#chrom	start	stop	peakID	Z-score	strand	members_of_nearest_promoter_on_the_left	offset	promoter_strand	members_of_2nd_nearest_promoter_on_the_left	offset	promoter_strand	members_of_3rd_nearest_promoter_on_the_left	offset	promoter_strand	members_of_nearest_promoter_on_the_right	offset	promoter_strand	members_of_2nd_nearest_promoter_on_the_right	offset	promoter_strand	members_of_3rd_nearest_promoter_on_the_right	offset	promoter_strand	genes[member|symbol|gid|name](##-separated)	denovo_WM_7_site_number	CTCF.p2_site_number	binding_sites (WM_name:relative distance to peak center:posterior binding probability)
chrX	130868823	130868950	reg1000000.p3	25.874	+	BC137050 AB529233 NM_001004486	-190888	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-445474	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-445624	-	TSC_hg19_v1_chrX_-_130964633 AK097911	95765	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	288435	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	288754	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.886422	0.036159	denovo_WM_7:105:0.795
chrX	130950926	130951053	reg1000003.p1	24.853	+	BC137050 AB529233 NM_001004486	-272991	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-527577	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-527727	-	TSC_hg19_v1_chrX_-_130964633 AK097911	13662	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	206332	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	206651	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.01956	
chrX	52950471	52950599	reg1000001.p3	24.718	+	AL834135 NM_001099684	-22127	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	-24144	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	-24191	+	AL834135 NM_001099684	35093	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	37127	-	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	74111	-	AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A	0.625217	0.926915	denovo_WM_7:47:0.454	CTCF.p2:-55:0.927
chrX	52004680	52004804	reg1000002.p2	24.448	+	NM_001242362 NM_030801 NM_177535 NM_177537 AB058762 BC001207 AK098830 AK289458 AK308365 AB040527 AB040528 AB040529 NM_001098800 AL136582 BC081566 BC063838	-76765	+	BC063838 BC081566 AL136582 AB040527 AB040528 AB040529 NM_001098800 AK098830 AK289458 AK308365 BC001207 AB058762 NM_001242362 NM_030801 NM_177535 NM_177537	-192434	-	TSC_hg19_v1_chrX_+_51636723 NM_001005333 NM_006986 AF258554 AK298574 AK308706 BC014070 AK314053 AK074092 AF217963 AF300328	-368039	+	NM_130777 BC066311 BC009232 AJ318880	107385	+	AB590383 DQ893147 DQ896442 NM_001079538	108415	+	NM_001097592 NM_001097594 NM_001097597 NM_001097604 NM_020411 AF251237 NM_001097593 NM_001097596 NM_001097598 NM_001097605 NM_133430 AJ290447 AJ318879 AJ318878	234171	+	NM_001242362|MAGED4B|81557|melanoma antigen family D, 4B##NM_030801|MAGED4B|81557|melanoma antigen family D, 4B##NM_177535|MAGED4B|81557|melanoma antigen family D, 4B##NM_177537|MAGED4B|81557|melanoma antigen family D, 4B##AB058762|MAGED4B|81557|melanoma antigen family D, 4B##BC001207|MAGED4B|81557|melanoma antigen family D, 4B##AK098830|MAGED4B|81557|melanoma antigen family D, 4B##AK289458|MAGED4B|81557|melanoma antigen family D, 4B##AK308365|MAGED4B|81557|melanoma antigen family D, 4B##AB040527|MAGED4B|81557|melanoma antigen family D, 4B##AB040528|MAGED4B|81557|melanoma antigen family D, 4B##AB040529|MAGED4B|81557|melanoma antigen family D, 4B##NM_001098800|MAGED4|728239|melanoma antigen family D, 4##AL136582|MAGED4B|81557|melanoma antigen family D, 4B##BC081566|MAGED4B|81557|melanoma antigen family D, 4B##BC063838|MAGED4B|81557|melanoma antigen family D, 4B##BC063838|MAGED4B|81557|melanoma antigen family D, 4B##BC081566|MAGED4B|81557|melanoma antigen family D, 4B##AL136582|MAGED4B|81557|melanoma antigen family D, 4B##AB040527|MAGED4B|81557|melanoma antigen family D, 4B##AB040528|MAGED4B|81557|melanoma antigen family D, 4B##AB040529|MAGED4B|81557|melanoma antigen family D, 4B##NM_001098800|MAGED4|728239|melanoma antigen family D, 4##AK098830|MAGED4B|81557|melanoma antigen family D, 4B##AK289458|MAGED4B|81557|melanoma antigen family D, 4B##AK308365|MAGED4B|81557|melanoma antigen family D, 4B##BC001207|MAGED4B|81557|melanoma antigen family D, 4B##AB058762|MAGED4B|81557|melanoma antigen family D, 4B##NM_001242362|MAGED4B|81557|melanoma antigen family D, 4B##NM_030801|MAGED4B|81557|melanoma antigen family D, 4B##NM_177535|MAGED4B|81557|melanoma antigen family D, 4B##NM_177537|MAGED4B|81557|melanoma antigen family D, 4B##NM_001005333|MAGED1|9500|melanoma antigen family D, 1##NM_006986|MAGED1|9500|melanoma antigen family D, 1##AF258554|MAGED1|9500|melanoma antigen family D, 1##AK298574|MAGED1|9500|melanoma antigen family D, 1##AK308706|MAGED1|9500|melanoma antigen family D, 1##BC014070|MAGED1|9500|melanoma antigen family D, 1##AK314053|MAGED1|9500|melanoma antigen family D, 1##AK074092|MAGED1|9500|melanoma antigen family D, 1##AF217963|MAGED1|9500|melanoma antigen family D, 1##AF300328|MAGED1|9500|melanoma antigen family D, 1##NM_130777|XAGE2|9502|X antigen family, member 2##BC066311|XAGE2|9502|X antigen family, member 2##BC009232|XAGE2|9502|X antigen family, member 2##AJ318880|XAGE2|9502|X antigen family, member 2##DQ893147|XAGE2|9502|X antigen family, member 2##DQ896442|XAGE2|9502|X antigen family, member 2##NM_001079538|XAGE2B|728242|X antigen family, member 2B##NM_001097592|XAGE1A|653219|X antigen family, member 1A##NM_001097594|XAGE1B|653220|X antigen family, member 1B##NM_001097597|XAGE1C|653048|X antigen family, member 1C##NM_001097604|XAGE1E|653067|X antigen family, member 1E##NM_020411|XAGE1D|9503|X antigen family, member 1D##AF251237|XAGE1D|9503|X antigen family, member 1D##NM_001097593|XAGE1A|653219|X antigen family, member 1A##NM_001097596|XAGE1B|653220|X antigen family, member 1B##NM_001097598|XAGE1C|653048|X antigen family, member 1C##NM_001097605|XAGE1E|653067|X antigen family, member 1E##NM_133430|XAGE1D|9503|X antigen family, member 1D##AJ290447|XAGE1D|9503|X antigen family, member 1D##AJ318879|XAGE1D|9503|X antigen family, member 1D##AJ318878|XAGE1D|9503|X antigen family, member 1D	0.0	0.981712	CTCF.p2:36:0.982
chrX	130845150	130845277	reg1000005.p1	24.386	+	BC137050 AB529233 NM_001004486	-167215	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-421801	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-421951	-	TSC_hg19_v1_chrX_-_130964633 AK097911	119438	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	312108	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	312427	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.126215	
chrX	114960467	114960595	reg1000006.p1	24.384	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-132663	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-163489	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-164925	+	BC003645 TSC_hg19_v1_chrX_-_115085443	124908	-	AK313927 NM_000686 X87723 U16957	341464	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	607236	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	115009430	115009550	reg1000007.p1	24.121	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-181622	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-212448	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-213884	+	BC003645 TSC_hg19_v1_chrX_-_115085443	75949	-	AK313927 NM_000686 X87723 U16957	292505	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	558277	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.417996	CTCF.p2:-56:0.418
chrX	114999278	114999405	reg1000013.p1	24.085	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-171473	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-202299	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-203735	+	BC003645 TSC_hg19_v1_chrX_-_115085443	86098	-	AK313927 NM_000686 X87723 U16957	302654	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	568426	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114987320	114987447	reg1000021.p1	24.076	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-159515	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-190341	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-191777	+	BC003645 TSC_hg19_v1_chrX_-_115085443	98056	-	AK313927 NM_000686 X87723 U16957	314612	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	580384	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114972391	114972518	reg1000009.p1	24.055	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-144586	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-175412	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-176848	+	BC003645 TSC_hg19_v1_chrX_-_115085443	112985	-	AK313927 NM_000686 X87723 U16957	329541	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	595313	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114969412	114969539	reg1000011.p1	24.045	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-141607	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-172433	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-173869	+	BC003645 TSC_hg19_v1_chrX_-_115085443	115964	-	AK313927 NM_000686 X87723 U16957	332520	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	598292	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114990307	114990434	reg1000012.p1	24.041	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-162502	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-193328	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-194764	+	BC003645 TSC_hg19_v1_chrX_-_115085443	95069	-	AK313927 NM_000686 X87723 U16957	311625	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	577397	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114996269	114996396	reg1000018.p1	24.038	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-168464	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-199290	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-200726	+	BC003645 TSC_hg19_v1_chrX_-_115085443	89107	-	AK313927 NM_000686 X87723 U16957	305663	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	571435	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114975382	114975509	reg1000015.p1	24.033	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-147577	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-178403	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-179839	+	BC003645 TSC_hg19_v1_chrX_-_115085443	109994	-	AK313927 NM_000686 X87723 U16957	326550	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	592322	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114993276	114993403	reg1000019.p1	24.020	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-165471	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-196297	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-197733	+	BC003645 TSC_hg19_v1_chrX_-_115085443	92100	-	AK313927 NM_000686 X87723 U16957	308656	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	574428	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114978373	114978501	reg1000020.p1	24.002	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-150569	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-181395	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-182831	+	BC003645 TSC_hg19_v1_chrX_-_115085443	107002	-	AK313927 NM_000686 X87723 U16957	323558	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	589330	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chr3	183613162	183613292	reg1000008.p1	24.000	+	TSC_hg19_v1_chr3_-_183602690 NM_001037639 NM_018622	-10519	-	TSC_hg19_v1_chr3_-_183602669 BC003653	-10549	-	TSC_hg19_v1_chr3_-_183602663 AK024765	-10565	-	TSC_hg19_v1_chr3_-_183735673 BC142670 BC142719 U83661 AF104942 AY754874 AY754875 AY754876 AB209454 BC051358 NM_001023587 NM_005688	122464	-	AY159812 NM_182537	136104	+	NM_001145143	136302	+	NM_001037639|PARL|55486|presenilin associated, rhomboid-like##NM_018622|PARL|55486|presenilin associated, rhomboid-like##BC003653|PARL|55486|presenilin associated, rhomboid-like##AK024765|PARL|55486|presenilin associated, rhomboid-like##BC142670|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##BC142719|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##U83661|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AF104942|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754874|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754875|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754876|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AB209454|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##BC051358|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##NM_001023587|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##NM_005688|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY159812|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D##NM_182537|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D##NM_001145143|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D	1.095283	0.406926	CTCF.p2:-21:0.407
chrX	114966429	114966556	reg1000017.p1	23.987	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-138624	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-169450	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-170886	+	BC003645 TSC_hg19_v1_chrX_-_115085443	118947	-	AK313927 NM_000686 X87723 U16957	335503	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	601275	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114963448	114963575	reg1000016.p1	23.982	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-135643	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-166469	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-167905	+	BC003645 TSC_hg19_v1_chrX_-_115085443	121928	-	AK313927 NM_000686 X87723 U16957	338484	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	604256	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114984341	114984469	reg1000023.p1	23.959	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-156537	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-187363	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-188799	+	BC003645 TSC_hg19_v1_chrX_-_115085443	101034	-	AK313927 NM_000686 X87723 U16957	317590	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	583362	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chrX	114981356	114981483	reg1000022.p1	23.958	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-153551	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-184377	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-185813	+	BC003645 TSC_hg19_v1_chrX_-_115085443	104020	-	AK313927 NM_000686 X87723 U16957	320576	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	586348	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chr7	73482265	73482383	reg1000010.p1	23.538	+	BX538199 BC065566 AB208942 BX537939 BC050379 TSC_hg19_v1_chr7_+_73442502 AK094138 AK095990 AK122731 AK225659 AK092232 AX747420 BC035570 AM393341	-39823	+	TSC_hg19_v1_chr7_+_73442469 M36860 X52896	-39855	+	TSC_hg19_v1_chr7_+_73442462 AK125511 AK130894	-39868	+	AK290162 NM_002314 TSC_hg19_v1_chr7_+_73498133	15802	+	TSC_hg19_v1_chr7_+_73498160 D26309	15831	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	16010	+	BX538199|ELN|2006|elastin##BC065566|ELN|2006|elastin##AB208942|ELN|2006|elastin##BX537939|ELN|2006|elastin##BC050379|ELN|2006|elastin##AK094138|ELN|2006|elastin##AK095990|ELN|2006|elastin##AK122731|ELN|2006|elastin##AK225659|ELN|2006|elastin##AK092232|ELN|2006|elastin##BC035570|ELN|2006|elastin##AM393341|ELN|2006|elastin##M36860|ELN|2006|elastin##X52896|ELN|2006|elastin##AK125511|ELN|2006|elastin##AK130894|ELN|2006|elastin##AK290162|LIMK1|3984|LIM domain kinase 1##NM_002314|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1	1.054741	0.99075	CTCF.p2:18:0.991
chr11	57434769	57434903	reg1000004.p2	23.369	+	NM_001142597 NM_006831 TSC_hg19_v1_chr11_+_57425244 AK313007 AK300232 BC000446	-9606	+	BC029228 BC104781 BC112119 BC064995 AB098738 AK054775 AK124577 NM_145008	-17505	-	TSC_hg19_v1_chr11_-_57414981 BC111012	-19823	-	TSC_hg19_v1_chr11_+_57435327 AY894889	535	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	639	+	BC026967 TSC_hg19_v1_chr11_+_57435567	732	+	NM_001142597|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##NM_006831|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK313007|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK300232|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC000446|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC029228|YPEL4|219539|yippee-like 4 (Drosophila)##BC104781|YPEL4|219539|yippee-like 4 (Drosophila)##BC112119|YPEL4|219539|yippee-like 4 (Drosophila)##BC064995|YPEL4|219539|yippee-like 4 (Drosophila)##AB098738|YPEL4|219539|yippee-like 4 (Drosophila)##AK054775|YPEL4|219539|yippee-like 4 (Drosophila)##AK124577|YPEL4|219539|yippee-like 4 (Drosophila)##NM_145008|YPEL4|219539|yippee-like 4 (Drosophila)##BC111012|YPEL4|219539|yippee-like 4 (Drosophila)##AY894889|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5##BC026967|ZDHHC5|25921|zinc finger, DHHC-type containing 5	0.998975	0.0	
chrX	130926451	130926579	reg1000014.p1	23.355	+	BC137050 AB529233 NM_001004486	-248517	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-503103	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-503253	-	TSC_hg19_v1_chrX_-_130964633 AK097911	38136	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	230806	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	231125	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chrX	130927266	130927378	reg1000014.p2	23.292	+	BC137050 AB529233 NM_001004486	-249324	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-503910	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-504060	-	TSC_hg19_v1_chrX_-_130964633 AK097911	37329	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	229999	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	230318	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.021805	
chrX	52963970	52964109	reg1000026.p1	23.127	+	AL834135 NM_001099684	-35631	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	-37648	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	-37695	+	AL834135 NM_001099684	21589	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	23623	-	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	60607	-	AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A	0.982491	0.984387	denovo_WM_7:-49:0.341	denovo_WM_7:-52:0.559	CTCF.p2:52:0.984
chrX	75365485	75365633	reg1000028.p1	23.021	+	BC093964 BC111949 AF490509 AK094624 NM_138703	-360531	-	TSC_hg19_v1_chrX_-_74743299 NM_001146256 NM_001146257 NM_144969	-622242	-	AY358786 TSC_hg19_v1_chrX_-_74743270	-622293	-	AY927529 AY927616 BC001220 NM_016500 TSC_hg19_v1_chrX_+_75392896 AF151079 BC051894	27280	+	TSC_hg19_v1_chrX_+_75392955 CU674612	27396	+	NM_020932 TSC_hg19_v1_chrX_+_75648083 AB046807 AF490507 AK291270 BC050588	282545	+	BC093964|MAGEE2|139599|melanoma antigen family E, 2##BC111949|MAGEE2|139599|melanoma antigen family E, 2##AF490509|MAGEE2|139599|melanoma antigen family E, 2##AK094624|MAGEE2|139599|melanoma antigen family E, 2##NM_138703|MAGEE2|139599|melanoma antigen family E, 2##NM_001146256|ZDHHC15|158866|zinc finger, DHHC-type containing 15##NM_001146257|ZDHHC15|158866|zinc finger, DHHC-type containing 15##NM_144969|ZDHHC15|158866|zinc finger, DHHC-type containing 15##AY358786|ZDHHC15|158866|zinc finger, DHHC-type containing 15##AY927616|CXorf26|51260|chromosome X open reading frame 26##BC001220|CXorf26|51260|chromosome X open reading frame 26##NM_016500|CXorf26|51260|chromosome X open reading frame 26##BC051894|CXorf26|51260|chromosome X open reading frame 26##NM_020932|MAGEE1|57692|melanoma antigen family E, 1##AB046807|MAGEE1|57692|melanoma antigen family E, 1##AF490507|MAGEE1|57692|melanoma antigen family E, 1##AK291270|MAGEE1|57692|melanoma antigen family E, 1##BC050588|MAGEE1|57692|melanoma antigen family E, 1	0.0	0.0	
chr1	46872141	46872256	reg1000060.p1	22.994	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	-12222	+	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	-65755	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-102811	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	100474	+	NM_001097611	144688	-	BC002755 AB000409 AK096423 TSC_hg19_v1_chr1_-_47069922	197706	-	NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_001097611|KNCN|148930|kinocilin##BC002755|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##AB000409|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##AK096423|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1	2.102653	0.983655	CTCF.p2:-6:0.984	denovo_WM_7:35:0.809	denovo_WM_7:64:0.268	denovo_WM_7:65:0.268	denovo_WM_7:66:0.399
chrX	115002281	115002384	reg1000025.p2	22.517	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-174464	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-205290	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-206726	+	BC003645 TSC_hg19_v1_chrX_-_115085443	83107	-	AK313927 NM_000686 X87723 U16957	299663	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	565435	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chr2	238875500	238875620	reg1000027.p1	22.502	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	-107308	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	-168140	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-274485	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	64	+	TSC_hg19_v1_chr2_+_238875673 AK290063	120	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	143	+	NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.033231	0.0	
chr7	129710168	129710321	reg1000029.p1	22.420	+	TSC_hg19_v1_chr7_-_129691215 BC000190 AB463378 AJ537494 AM393415 CU679956 BC011551 AF151050 AK001317 AK022373 NM_016478	-19023	-	TSC_hg19_v1_chr7_-_129592801 NM_003344 NM_182697	-117435	-	BC006277 TSC_hg19_v1_chr7_-_129592785 NM_001202498	-117493	-	TSC_hg19_v1_chr7_+_129710381 BC044884 NM_014997 BC036464	116	+	TSC_hg19_v1_chr7_+_129710402 D87454	189	+	TSC_hg19_v1_chr7_+_129710580 BC009977	355	+	BC000190|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AJ537494|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AM393415|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC011551|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AF151050|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK001317|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK022373|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_016478|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_003344|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_182697|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC006277|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_001202498|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC044884|KLHDC10|23008|kelch domain containing 10##NM_014997|KLHDC10|23008|kelch domain containing 10##BC036464|KLHDC10|23008|kelch domain containing 10##D87454|KLHDC10|23008|kelch domain containing 10##BC009977|KLHDC10|23008|kelch domain containing 10	0.891979	0.0	denovo_WM_7:2:0.840
chrX	75369170	75369289	reg1000024.p2	22.304	+	BC093964 BC111949 AF490509 AK094624 NM_138703	-364201	-	TSC_hg19_v1_chrX_-_74743299 NM_001146256 NM_001146257 NM_144969	-625912	-	AY358786 TSC_hg19_v1_chrX_-_74743270	-625963	-	AY927529 AY927616 BC001220 NM_016500 TSC_hg19_v1_chrX_+_75392896 AF151079 BC051894	23610	+	TSC_hg19_v1_chrX_+_75392955 CU674612	23726	+	NM_020932 TSC_hg19_v1_chrX_+_75648083 AB046807 AF490507 AK291270 BC050588	278875	+	BC093964|MAGEE2|139599|melanoma antigen family E, 2##BC111949|MAGEE2|139599|melanoma antigen family E, 2##AF490509|MAGEE2|139599|melanoma antigen family E, 2##AK094624|MAGEE2|139599|melanoma antigen family E, 2##NM_138703|MAGEE2|139599|melanoma antigen family E, 2##NM_001146256|ZDHHC15|158866|zinc finger, DHHC-type containing 15##NM_001146257|ZDHHC15|158866|zinc finger, DHHC-type containing 15##NM_144969|ZDHHC15|158866|zinc finger, DHHC-type containing 15##AY358786|ZDHHC15|158866|zinc finger, DHHC-type containing 15##AY927616|CXorf26|51260|chromosome X open reading frame 26##BC001220|CXorf26|51260|chromosome X open reading frame 26##NM_016500|CXorf26|51260|chromosome X open reading frame 26##BC051894|CXorf26|51260|chromosome X open reading frame 26##NM_020932|MAGEE1|57692|melanoma antigen family E, 1##AB046807|MAGEE1|57692|melanoma antigen family E, 1##AF490507|MAGEE1|57692|melanoma antigen family E, 1##AK291270|MAGEE1|57692|melanoma antigen family E, 1##BC050588|MAGEE1|57692|melanoma antigen family E, 1	0.0	0.0	
chr17	37617464	37617608	reg1000030.p1	22.176	+	CU687400 BC131783 AF055994 BC006517 Y13467 BC060758 TSC_hg19_v1_chr17_-_37607519 AK299789 AK314185 NM_004774	-10115	-	TSC_hg19_v1_chr17_-_37557855 BC007557 DQ223959 AK312612 AK291844 AK123048 NM_001184906 NM_032875	-59636	-	BC109231 AJ608762 AK131500 NM_198993	-235557	-	TSC_hg19_v1_chr17_+_37617760 NM_015083 NM_016507 AK302645	216	+	TSC_hg19_v1_chr17_+_37618267 AF227198 BC140854 AB462974	750	+	TSC_hg19_v1_chr17_-_37764168 BC022481 NM_006160	146637	-	BC131783|MED1|5469|mediator complex subunit 1##AF055994|MED1|5469|mediator complex subunit 1##BC006517|MED1|5469|mediator complex subunit 1##Y13467|MED1|5469|mediator complex subunit 1##BC060758|MED1|5469|mediator complex subunit 1##AK299789|MED1|5469|mediator complex subunit 1##AK314185|MED1|5469|mediator complex subunit 1##NM_004774|MED1|5469|mediator complex subunit 1##BC007557|FBXL20|84961|F-box and leucine-rich repeat protein 20##DQ223959|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK312612|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK291844|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK123048|FBXL20|84961|F-box and leucine-rich repeat protein 20##NM_001184906|FBXL20|84961|F-box and leucine-rich repeat protein 20##NM_032875|FBXL20|84961|F-box and leucine-rich repeat protein 20##BC109231|STAC2|342667|SH3 and cysteine rich domain 2##AJ608762|STAC2|342667|SH3 and cysteine rich domain 2##AK131500|STAC2|342667|SH3 and cysteine rich domain 2##NM_198993|STAC2|342667|SH3 and cysteine rich domain 2##NM_015083|CDK12|51755|cyclin-dependent kinase 12##NM_016507|CDK12|51755|cyclin-dependent kinase 12##AK302645|CDK12|51755|cyclin-dependent kinase 12##AF227198|CDK12|51755|cyclin-dependent kinase 12##BC140854|CDK12|51755|cyclin-dependent kinase 12##BC022481|NEUROD2|4761|neurogenic differentiation 2##NM_006160|NEUROD2|4761|neurogenic differentiation 2	0.78757	0.0	denovo_WM_7:-11:0.731
chrX	130947288	130947416	reg1000031.p1	22.109	+	BC137050 AB529233 NM_001004486	-269354	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-523940	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-524090	-	TSC_hg19_v1_chrX_-_130964633 AK097911	17299	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	209969	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	210288	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr12	122120097	122120217	reg1000032.p1	21.818	+	BC057760 NM_173855	-12598	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-55514	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-101243	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	30587	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	111417	-	TSC_hg19_v1_chr12_-_122240852 AK311480	120700	-	BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)	2.961755	0.460296	CTCF.p2:-11:0.460	denovo_WM_7:34:0.841	denovo_WM_7:-45:0.454	denovo_WM_7:-61:0.429	denovo_WM_7:-64:0.487
chrX	56804911	56805031	reg1000034.p1	21.633	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-49280	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-214920	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-546061	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	217000	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	342957	-	BC071694 NM_019003	359086	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.360614	CTCF.p2:72:0.361
chrX	56799512	56799626	reg1000033.p1	21.537	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-43878	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-209518	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-540659	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	222402	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	348359	-	BC071694 NM_019003	364488	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.360614	CTCF.p2:73:0.361
chrX	130875921	130876042	reg1000037.p2	21.382	+	BC137050 AB529233 NM_001004486	-197983	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-452569	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-452719	-	TSC_hg19_v1_chrX_-_130964633 AK097911	88670	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	281340	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	281659	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chrX	115004350	115004480	reg1000035.p2	21.289	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-176547	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-207373	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-208809	+	BC003645 TSC_hg19_v1_chrX_-_115085443	81024	-	AK313927 NM_000686 X87723 U16957	297580	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	563352	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chr1	54873343	54873497	reg1000036.p1	21.275	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-1336	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	-1398	-	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	-1632	-	TSC_hg19_v1_chr1_+_55007956 AK091112	134541	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	140474	+	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	215728	-	NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A	1.923147	0.0	denovo_WM_7:9:0.723	denovo_WM_7:24:0.732
chrX	130875120	130875248	reg1000037.p1	21.226	+	BC137050 AB529233 NM_001004486	-197186	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-451772	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-451922	-	TSC_hg19_v1_chrX_-_130964633 AK097911	89467	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	282137	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	282456	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.034162	0.0	
chrX	130912657	130912786	reg1000046.p1	20.824	+	BC137050 AB529233 NM_001004486	-234723	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-489309	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-489459	-	TSC_hg19_v1_chrX_-_130964633 AK097911	51930	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	244600	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	244919	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.021805	
chr10	7453002	7453143	reg1000040.p1	20.807	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-1822	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-830592	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	-830811	-	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	362	-	AK027849 TSC_hg19_v1_chr10_-_7659249	206145	-	BC004282 NM_032817	208552	-	AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	1.978857	0.0	denovo_WM_7:-22:0.497	denovo_WM_7:-23:0.490	denovo_WM_7:-37:0.416	denovo_WM_7:-38:0.565
chr3	183892324	183892480	reg1000041.p1	20.775	+	TSC_hg19_v1_chr3_+_183873320 BC032459 AF006013 AB463014 CU689382 DQ891616 DQ894808	-19037	+	TSC_hg19_v1_chr3_+_183873305 U49262	-19097	+	TSC_hg19_v1_chr3_+_183873280 D86963 NM_004423	-19125	+	TSC_hg19_v1_chr3_+_183892642 NM_001025205 NM_004068 AK057883 AK297849	205	+	TSC_hg19_v1_chr3_+_183892650 BC004996	251	+	AK294159 AK304510 TSC_hg19_v1_chr3_+_183892662 BC014030	261	+	BC032459|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##AF006013|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##DQ891616|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##DQ894808|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##U49262|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##D86963|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##NM_004423|DVL3|1857|dishevelled, dsh homolog 3 (Drosophila)##NM_001025205|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##NM_004068|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##AK057883|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##AK297849|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##BC004996|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##AK294159|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##AK304510|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##BC014030|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit	1.983236	0.0	denovo_WM_7:-1:0.325	denovo_WM_7:-2:0.261	denovo_WM_7:-19:0.258	denovo_WM_7:-20:0.322
chrX	130886538	130886669	reg1000052.p1	20.756	+	BC137050 AB529233 NM_001004486	-208605	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-463191	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-463341	-	TSC_hg19_v1_chrX_-_130964633 AK097911	78048	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	270718	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	271037	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.732382	0.0	denovo_WM_7:-104:0.678
chr19	10350040	10350218	reg1000045.p3	20.747	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-8123	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-44402	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-44524	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	12518	+	TSC_hg19_v1_chr19_+_10362889 BC009858	12769	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	12863	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	1.874682	0.0	denovo_WM_7:-7:0.739	denovo_WM_7:25:0.384	denovo_WM_7:26:0.450
chr15	66579892	66580032	reg1000053.p1	20.656	+	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	-33885	-	TSC_hg19_v1_chr15_-_66321664 AK054827	-258269	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-418115	+	NM_133375 AK295392 BC022089	5683	+	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	5937	+	AK000523 TSC_hg19_v1_chr15_-_66649024 AK299233 BC000870 NM_017858	69061	-	BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK000523|TIPIN|54962|TIMELESS interacting protein##AK299233|TIPIN|54962|TIMELESS interacting protein##BC000870|TIPIN|54962|TIMELESS interacting protein##NM_017858|TIPIN|54962|TIMELESS interacting protein	1.683172	0.272105	CTCF.p2:12:0.272	denovo_WM_7:-15:0.541	denovo_WM_7:-30:0.530
chr7	18395891	18396036	reg1000061.p1	20.605	+	AK097178 TSC_hg19_v1_chr7_+_18330071	-65904	+	TSC_hg19_v1_chr7_+_18126583 AK304298 NM_001204144	-269372	+	BC062797 BC005309 M57423 NM_175886	-328498	-	TSC_hg19_v1_chr7_+_18535361 BC092441 BC150328 AB018287 AJ459808 BC152405 NM_001204145 NM_001204146 NM_014707 NM_178423 AK297404 AK316109 AY429540	139436	+	CR749550 EU832154 EU832248 TSC_hg19_v1_chr7_+_18535882 NM_058176 NM_178425 AB385379 AY032737 AY032738 AY197371 EU832247 BC111735	139908	+	NM_001204147 NM_001204148 TSC_hg19_v1_chr7_+_18548932 AK304410	152960	+	AK097178|HDAC9|9734|histone deacetylase 9##AK304298|HDAC9|9734|histone deacetylase 9##NM_001204144|HDAC9|9734|histone deacetylase 9##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC150328|HDAC9|9734|histone deacetylase 9##AB018287|HDAC9|9734|histone deacetylase 9##AJ459808|HDAC9|9734|histone deacetylase 9##BC152405|HDAC9|9734|histone deacetylase 9##NM_001204145|HDAC9|9734|histone deacetylase 9##NM_001204146|HDAC9|9734|histone deacetylase 9##NM_014707|HDAC9|9734|histone deacetylase 9##NM_178423|HDAC9|9734|histone deacetylase 9##AK297404|HDAC9|9734|histone deacetylase 9##AK316109|HDAC9|9734|histone deacetylase 9##AY429540|HDAC9|9734|histone deacetylase 9##CR749550|HDAC9|9734|histone deacetylase 9##EU832154|HDAC9|9734|histone deacetylase 9##EU832248|HDAC9|9734|histone deacetylase 9##NM_058176|HDAC9|9734|histone deacetylase 9##NM_178425|HDAC9|9734|histone deacetylase 9##AY032737|HDAC9|9734|histone deacetylase 9##AY032738|HDAC9|9734|histone deacetylase 9##AY197371|HDAC9|9734|histone deacetylase 9##EU832247|HDAC9|9734|histone deacetylase 9##BC111735|HDAC9|9734|histone deacetylase 9##NM_001204147|HDAC9|9734|histone deacetylase 9##NM_001204148|HDAC9|9734|histone deacetylase 9##AK304410|HDAC9|9734|histone deacetylase 9	1.179782	0.99011	CTCF.p2:2:0.990
chr14	23764325	23764437	reg1000038.p2	20.581	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-9056	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	-9112	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-111509	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	11663	+	NM_004643	25015	+	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	26293	+	NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1	1.868611	0.904993	CTCF.p2:8:0.905	denovo_WM_7:-20:0.811	denovo_WM_7:-63:0.260	denovo_WM_7:-66:0.388
chr3	51534090	51534256	reg1000047.p2	20.514	+	TSC_hg19_v1_chr3_-_51534015 AB018343 BC110371 NM_001171904 NM_014703	-167	-	BC022792 TSC_hg19_v1_chr3_-_51533986	-224	-	TSC_hg19_v1_chr3_+_51428730 BC121184 BC139836	-105423	+	AK122683 NM_015106	41422	+	NM_001129884 NM_001243727 NM_015926 TSC_hg19_v1_chr3_+_51705247 AK023997 AK222938 AK222949 BC008742 NM_001243725 NM_001243726 AY358972 BC001592	171093	+	NM_000839 NM_001130063 AK315816 AK289984 AK313056 BC041447	206919	+	AB018343|VPRBP|9730|Vpr (HIV-1) binding protein##BC110371|VPRBP|9730|Vpr (HIV-1) binding protein##NM_001171904|VPRBP|9730|Vpr (HIV-1) binding protein##NM_014703|VPRBP|9730|Vpr (HIV-1) binding protein##BC022792|VPRBP|9730|Vpr (HIV-1) binding protein##BC121184|RBM15B|29890|RNA binding motif protein 15B##BC139836|RBM15B|29890|RNA binding motif protein 15B##AK122683|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_015106|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_001129884|TEX264|51368|testis expressed 264##NM_001243727|TEX264|51368|testis expressed 264##NM_015926|TEX264|51368|testis expressed 264##AK023997|TEX264|51368|testis expressed 264##AK222938|TEX264|51368|testis expressed 264##AK222949|TEX264|51368|testis expressed 264##BC008742|TEX264|51368|testis expressed 264##NM_001243725|TEX264|51368|testis expressed 264##NM_001243726|TEX264|51368|testis expressed 264##AY358972|TEX264|51368|testis expressed 264##BC001592|TEX264|51368|testis expressed 264##NM_000839|GRM2|2912|glutamate receptor, metabotropic 2##NM_001130063|GRM2|2912|glutamate receptor, metabotropic 2##AK315816|GRM2|2912|glutamate receptor, metabotropic 2##AK289984|GRM2|2912|glutamate receptor, metabotropic 2##AK313056|GRM2|2912|glutamate receptor, metabotropic 2##BC041447|GRM2|2912|glutamate receptor, metabotropic 2	1.989929	0.0	denovo_WM_7:-11:0.246	denovo_WM_7:-12:0.211	denovo_WM_7:-31:0.209	denovo_WM_7:-32:0.244
chrX	130917714	130917842	reg1000056.p1	20.413	+	BC137050 AB529233 NM_001004486	-239780	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-494366	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-494516	-	TSC_hg19_v1_chrX_-_130964633 AK097911	46873	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	239543	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	239862	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.015417	
chr12	106780117	106780236	reg1000044.p1	20.412	+	NM_001160708 AK122713	-28307	+	TSC_hg19_v1_chr12_+_106751589 BC046238 AK291635 AY092084	-28599	+	NM_018082 TSC_hg19_v1_chr12_+_106751498 BX537447	-28706	+	AB095366 NM_213594 TSC_hg19_v1_chr12_+_106976698 AK291445	196515	+	NM_001206691 AB095365 AK302837 AB044245	214755	+	BC028582 NM_032491 AF332192 AK315698 BC030644 CU688514 CU688962 DQ890831 DQ893986	298357	+	NM_001160708|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AK122713|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##BC046238|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AK291635|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AY092084|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##NM_018082|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##BX537447|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AB095366|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##NM_213594|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AK291445|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##NM_001206691|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AB095365|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AK302837|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AB044245|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##BC028582|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##NM_032491|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AF332192|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AK315698|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##BC030644|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##DQ890831|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##DQ893986|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)	0.994521	0.998153	CTCF.p2:-1:0.998	denovo_WM_7:-48:0.780
chrX	130956443	130956573	reg1000057.p1	20.408	+	BC137050 AB529233 NM_001004486	-278510	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-533096	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-533246	-	TSC_hg19_v1_chrX_-_130964633 AK097911	8143	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	200813	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	201132	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chrX	115066551	115066665	reg1000059.p1	20.291	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-238740	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-269566	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-271002	+	BC003645 TSC_hg19_v1_chrX_-_115085443	18831	-	AK313927 NM_000686 X87723 U16957	235387	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	501159	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129317	
chr1	27721969	27722091	reg1000051.p1	20.279	+	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-2864	+	BC137466 AY358761 NM_207397	-12238	-	AY358081 CR456808 DQ892028 DQ895220 AK309540 AK075140 AK309576 BC020731 NM_003665 NM_173452 AY358283	-20715	-	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	10154	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	94570	-	TSC_hg19_v1_chr1_-_27816670 BC012329	94641	-	BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AY358081|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##CR456808|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##DQ892028|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##DQ895220|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##AK309540|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##AK075140|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##BC020731|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##NM_003665|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##NM_173452|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##AY358283|FCN3|8547|ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)##BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2	0.988989	0.999676	denovo_WM_7:-21:0.989	CTCF.p2:41:1.000
chr15	42783332	42783453	reg1000050.p1	20.207	+	TSC_hg19_v1_chr15_-_42783322 AK226132 BX649141 AK302735	-68	-	AL831983 BC029366 BC070244 AF205632 BC058023 BC111396 NM_022473 TSC_hg19_v1_chr15_-_42749731 AK294529 AK091929 AX747260	-33655	-	BC107791 BC004883 NM_173089 NM_173090 BC067126 BC003521 BC100782 BC100783 BC100784 BC128605 BC007810	-86400	+	AK290152 AK315279 NM_003825 NM_130798	4088	+	U55936 TSC_hg19_v1_chr15_+_42787875 BC022890 BC003686 AK313161 BC000148 AJ011915	4475	+	BX538324 TSC_hg19_v1_chr15_-_42840973 BC051262 BC058935 AK094131 CR749223 AK309861	57558	-	AK226132|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK302735|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AL831983|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC029366|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC070244|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AF205632|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC058023|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC111396|ZFP106|64397|zinc finger protein 106 homolog (mouse)##NM_022473|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK294529|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK091929|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC107791|CAPN3|825|calpain 3, (p94)##BC004883|CAPN3|825|calpain 3, (p94)##NM_173089|CAPN3|825|calpain 3, (p94)##NM_173090|CAPN3|825|calpain 3, (p94)##BC067126|CAPN3|825|calpain 3, (p94)##BC003521|CAPN3|825|calpain 3, (p94)##BC100782|CAPN3|825|calpain 3, (p94)##BC100783|CAPN3|825|calpain 3, (p94)##BC100784|CAPN3|825|calpain 3, (p94)##BC128605|CAPN3|825|calpain 3, (p94)##BC007810|CAPN3|825|calpain 3, (p94)##AK290152|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK315279|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_003825|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_130798|SNAP23|8773|synaptosomal-associated protein, 23kDa##U55936|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC022890|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC003686|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK313161|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC000148|SNAP23|8773|synaptosomal-associated protein, 23kDa##AJ011915|SNAP23|8773|synaptosomal-associated protein, 23kDa##BX538324|LRRC57|255252|leucine rich repeat containing 57##BC051262|LRRC57|255252|leucine rich repeat containing 57##BC058935|LRRC57|255252|leucine rich repeat containing 57##AK094131|LRRC57|255252|leucine rich repeat containing 57##CR749223|LRRC57|255252|leucine rich repeat containing 57##AK309861|LRRC57|255252|leucine rich repeat containing 57	0.0	0.0	
chr19	10111036	10111164	reg1000055.p1	20.105	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	-63976	-	BC031971 TSC_hg19_v1_chr19_+_9946188	-164936	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	-165149	+	TSC_hg19_v1_chr19_-_10121181 AF177941 NM_015719	10043	-	DQ426888 AF229845 NM_015725	12792	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	85686	+	DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2##BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF177941|COL5A3|50509|collagen, type V, alpha 3##NM_015719|COL5A3|50509|collagen, type V, alpha 3##AF229845|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_015725|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66	1.997907	0.837122	CTCF.p2:-6:0.837	denovo_WM_7:35:0.217	denovo_WM_7:36:0.630	denovo_WM_7:51:0.660
chrX	130839091	130839200	reg1000054.p2	20.084	+	BC137050 AB529233 NM_001004486	-161147	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-415733	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-415883	-	TSC_hg19_v1_chrX_-_130964633 AK097911	125506	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	318176	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	318495	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.223619	0.01243	denovo_WM_7:106:0.224
chrX	56794120	56794242	reg1000066.p1	20.084	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-38490	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-204130	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-535271	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	227790	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	353747	-	BC071694 NM_019003	369876	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.360614	CTCF.p2:58:0.361
chr6	43037810	43037947	reg1000049.p1	19.992	+	NM_201522 AK127894	-9640	+	AK094102 NM_201523 AK055293 BX640717	-10248	+	AK297433 AK056393 NM_138343 NM_201521 BC012357 BC080637 BC103727	-10498	+	TSC_hg19_v1_chr6_+_43044048 NM_002821 NM_152880 NM_152881 NM_152882 U33635 BC071557 BC002377 BC014626 AK292589 AF531868 AF531869 AF531870 AF531871 AF531872 U40271 AB209350 AK291016	6199	+	NM_003131 TSC_hg19_v1_chr6_+_43139027 BC052572 J03161	101175	+	TSC_hg19_v1_chr6_+_43139192 BC048211	101315	+	NM_201522|KLC4|89953|kinesin light chain 4##AK127894|KLC4|89953|kinesin light chain 4##AK094102|KLC4|89953|kinesin light chain 4##NM_201523|KLC4|89953|kinesin light chain 4##AK055293|KLC4|89953|kinesin light chain 4##BX640717|KLC4|89953|kinesin light chain 4##AK297433|KLC4|89953|kinesin light chain 4##AK056393|KLC4|89953|kinesin light chain 4##NM_138343|KLC4|89953|kinesin light chain 4##NM_201521|KLC4|89953|kinesin light chain 4##BC012357|KLC4|89953|kinesin light chain 4##BC080637|KLC4|89953|kinesin light chain 4##BC103727|KLC4|89953|kinesin light chain 4##NM_002821|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152880|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152881|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152882|PTK7|5754|PTK7 protein tyrosine kinase 7##U33635|PTK7|5754|PTK7 protein tyrosine kinase 7##BC071557|PTK7|5754|PTK7 protein tyrosine kinase 7##BC002377|PTK7|5754|PTK7 protein tyrosine kinase 7##BC014626|PTK7|5754|PTK7 protein tyrosine kinase 7##AK292589|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531868|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531869|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531870|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531871|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531872|PTK7|5754|PTK7 protein tyrosine kinase 7##U40271|PTK7|5754|PTK7 protein tyrosine kinase 7##AB209350|PTK7|5754|PTK7 protein tyrosine kinase 7##AK291016|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_003131|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC052572|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##J03161|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC048211|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)	1.576292	0.025056	denovo_WM_7:-20:0.575	denovo_WM_7:-35:0.468	denovo_WM_7:-36:0.473
chrX	130838266	130838401	reg1000054.p1	19.935	+	BC137050 AB529233 NM_001004486	-160335	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-414921	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-415071	-	TSC_hg19_v1_chrX_-_130964633 AK097911	126318	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	318988	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	319307	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr1	160960157	160960273	reg1000069.p1	19.910	+	HQ258193 AY065973 AY358905 NM_080878 BC117225 BC143339 BC143341	-35656	-	AY619691 AB036706 AF271386 AK000029 AY619692 AK222533 AY358359 AY157362 AY065972 AY157361 BC020664 NM_017625 AY549722	-105257	-	AB528046 AF145782 CU691064 BC053985 AJ245375 AJ245376 AJ245377 BC041607 AF105261 AF242540 AF107761 AK313201 AF117711 AK295950 BC028073 NM_001166663 NM_001166664 NM_016382	-127637	-	BT020103 CR533512 DQ892228 DQ895428 EU831648 EU831732 AB528601 AF207907 AK304412 TSC_hg19_v1_chr1_-_160990931 BC001533 AY358896 AK026665 AF154005 AK075152 AL136649	30683	-	TSC_hg19_v1_chr1_-_160990981 NM_016946	30836	-	AF191495 TSC_hg19_v1_chr1_-_161008713 BC001699 BC038219	48499	-	HQ258193|ITLN2|142683|intelectin 2##AY065973|ITLN2|142683|intelectin 2##AY358905|ITLN2|142683|intelectin 2##NM_080878|ITLN2|142683|intelectin 2##BC117225|ITLN2|142683|intelectin 2##BC143339|ITLN2|142683|intelectin 2##BC143341|ITLN2|142683|intelectin 2##AY619691|ITLN1|55600|intelectin 1 (galactofuranose binding)##AB036706|ITLN1|55600|intelectin 1 (galactofuranose binding)##AF271386|ITLN1|55600|intelectin 1 (galactofuranose binding)##AK000029|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY619692|ITLN1|55600|intelectin 1 (galactofuranose binding)##AK222533|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY358359|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY157362|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY065972|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY157361|ITLN1|55600|intelectin 1 (galactofuranose binding)##BC020664|ITLN1|55600|intelectin 1 (galactofuranose binding)##NM_017625|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY549722|ITLN1|55600|intelectin 1 (galactofuranose binding)##AF145782|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC053985|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245375|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245376|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245377|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC041607|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF105261|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF242540|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF107761|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK313201|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF117711|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK295950|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC028073|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166663|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166664|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_016382|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BT020103|F11R|50848|F11 receptor##CR533512|F11R|50848|F11 receptor##DQ892228|F11R|50848|F11 receptor##DQ895428|F11R|50848|F11 receptor##EU831648|F11R|50848|F11 receptor##EU831732|F11R|50848|F11 receptor##AF207907|F11R|50848|F11 receptor##AK304412|F11R|50848|F11 receptor##BC001533|F11R|50848|F11 receptor##AY358896|F11R|50848|F11 receptor##AK026665|F11R|50848|F11 receptor##AF154005|F11R|50848|F11 receptor##AK075152|F11R|50848|F11 receptor##AL136649|F11R|50848|F11 receptor##NM_016946|F11R|50848|F11 receptor##BC001699|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##BC038219|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1	0.999414	0.957028	CTCF.p2:10:0.957
chr8	1729538	1729663	reg1000058.p1	19.811	+	TSC_hg19_v1_chr8_+_1712012 BC007725	-17564	+	NM_018941 TSC_hg19_v1_chr8_+_1711937 AK312486 AF123757 AF123758 AF123759 AF123760 AF123761	-17690	+	AF119818 AF119817 NM_004745	-280051	+	TSC_hg19_v1_chr8_+_1772112 AB002292 NM_014629 BC112926 CR749570	42539	+	TSC_hg19_v1_chr8_+_1922078 AB018254 NM_014867	192458	+	TSC_hg19_v1_chr8_+_1949299 AY762229	219650	+	BC007725|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##NM_018941|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AK312486|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123757|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123758|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123759|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123760|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123761|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF119818|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AF119817|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_004745|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AB002292|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##NM_014629|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##BC112926|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##CR749570|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##AB018254|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##NM_014867|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY762229|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11	0.996443	0.999265	CTCF.p2:-17:0.999
chr17	20020068	20020216	reg1000042.p1	19.748	+	AY816328 AY816329 NM_001033553 NM_152904 AB041533	-29808	+	TSC_hg19_v1_chr17_+_19976949 AK314341	-43240	+	TSC_hg19_v1_chr17_+_19912678 AK094274 NM_001243439 AK295093	-107474	+	TSC_hg19_v1_chr17_+_20059384 NM_001033554 NM_001033555 NM_001243438 AK301318 AK304186 AY816326 AY816327 BC021123 BC050058	39192	+	BC033618 TSC_hg19_v1_chr17_+_20108434 AK298601	88292	+	TSC_hg19_v1_chr17_+_20224469 BC036241	204324	+	AY816328|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816329|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001033553|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_152904|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AB041533|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK314341|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001243439|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK295093|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001033554|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001033555|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001243438|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK301318|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK304186|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816326|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816327|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC021123|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC050058|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC033618|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK298601|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC036241|CCDC144C|348254|coiled-coil domain containing 144C	1.991626	0.990165	denovo_WM_7:-2:0.860	denovo_WM_7:-17:0.727	denovo_WM_7:-18:0.270	CTCF.p2:36:0.990
chr2	4007033	4007164	reg1000077.p1	19.747	+	AK302299 NM_018436 BC029652	-301301	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-364529	+	X74803 TSC_hg19_v1_chr2_+_3627765	-379353	+	U23752 AB028641 NM_003108 BC025789 AB464713	1825717	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	2998802	-	TSC_hg19_v1_chr2_-_7006650 AK308509	2999605	-	AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##X74803|RPS7|6201|ribosomal protein S7##U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	1.87831	0.250863	CTCF.p2:-15:0.251	denovo_WM_7:23:0.297	denovo_WM_7:24:0.484	denovo_WM_7:38:0.300	denovo_WM_7:39:0.452
chrX	130936930	130937063	reg1000063.p1	19.547	+	BC137050 AB529233 NM_001004486	-258998	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-513584	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-513734	-	TSC_hg19_v1_chrX_-_130964633 AK097911	27655	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	220325	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	220644	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr3	127415157	127415287	reg1000082.p1	19.540	+	TSC_hg19_v1_chr3_+_127391798 NM_032548 NM_172027 BC011858 AK098738 AK130594 AB053324 AB053325 AB053326 AK315148 AF297986 CU680084	-23405	+	TSC_hg19_v1_chr3_+_127348020 BC019330 AY359096 NM_015720 BC052585 AF219137	-67190	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	-97938	+	CR456835 TSC_hg19_v1_chr3_-_127541359 AK304844 BC000551 U67963 AK315529 BC006230 NM_007283	126208	-	TSC_hg19_v1_chr3_-_127542029 AK091314 AK310874 NM_001003794	126920	-	AK307108 BX537865 TSC_hg19_v1_chr3_+_127634319	219096	+	NM_032548|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##NM_172027|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC011858|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK098738|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK130594|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053324|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053325|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053326|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK315148|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AF297986|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC019330|PODXL2|50512|podocalyxin-like 2##AY359096|PODXL2|50512|podocalyxin-like 2##NM_015720|PODXL2|50512|podocalyxin-like 2##BC052585|PODXL2|50512|podocalyxin-like 2##AF219137|PODXL2|50512|podocalyxin-like 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2##CR456835|MGLL|11343|monoglyceride lipase##AK304844|MGLL|11343|monoglyceride lipase##BC000551|MGLL|11343|monoglyceride lipase##U67963|MGLL|11343|monoglyceride lipase##AK315529|MGLL|11343|monoglyceride lipase##BC006230|MGLL|11343|monoglyceride lipase##NM_007283|MGLL|11343|monoglyceride lipase##AK091314|MGLL|11343|monoglyceride lipase##AK310874|MGLL|11343|monoglyceride lipase##NM_001003794|MGLL|11343|monoglyceride lipase##AK307108|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12##BX537865|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	1.986178	0.0	denovo_WM_7:25:0.265	denovo_WM_7:26:0.221	denovo_WM_7:44:0.231	denovo_WM_7:45:0.275
chrX	115057248	115057376	reg1000083.p1	19.520	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-229444	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-260270	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-261706	+	BC003645 TSC_hg19_v1_chrX_-_115085443	28127	-	AK313927 NM_000686 X87723 U16957	244683	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	510455	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.192038	
chr12	122028707	122028887	reg1000043.p4	19.511	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-9883	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-10538	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-123723	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	35846	+	BC057760 NM_173855	78762	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	121947	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	1.984476	0.0	denovo_WM_7:13:0.896	denovo_WM_7:28:0.885
chr14	102569489	102569638	reg1000076.p1	19.511	+	TSC_hg19_v1_chr14_-_102553513 NM_005348	-16057	-	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	-16199	-	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	-138602	+	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	36476	-	TSC_hg19_v1_chr14_+_102606250 NM_001242414 NM_001242415 NM_001242416 NM_001242417 NM_001242418 NM_144574 NM_181291 NM_181308 BC030654 AK090580 AK225852 BC028387 AK090978 AX746714 AK297727 AL832242 AL832500 CU688486 DQ891530 DQ894719 EU831767 EU831845 AF327354 BX248274	36647	+	TSC_hg19_v1_chr14_-_102771492 AK094747 BC053536 BC026069 AK302349 AK312778 AB022694 NM_014226	201936	-	NM_005348|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001242414|WDR20|91833|WD repeat domain 20##NM_001242415|WDR20|91833|WD repeat domain 20##NM_001242416|WDR20|91833|WD repeat domain 20##NM_001242417|WDR20|91833|WD repeat domain 20##NM_001242418|WDR20|91833|WD repeat domain 20##NM_144574|WDR20|91833|WD repeat domain 20##NM_181291|WDR20|91833|WD repeat domain 20##NM_181308|WDR20|91833|WD repeat domain 20##BC030654|WDR20|91833|WD repeat domain 20##AK090580|WDR20|91833|WD repeat domain 20##AK225852|WDR20|91833|WD repeat domain 20##BC028387|WDR20|91833|WD repeat domain 20##AK090978|WDR20|91833|WD repeat domain 20##AK297727|WDR20|91833|WD repeat domain 20##AL832242|WDR20|91833|WD repeat domain 20##AL832500|WDR20|91833|WD repeat domain 20##DQ891530|WDR20|91833|WD repeat domain 20##DQ894719|WDR20|91833|WD repeat domain 20##EU831767|WDR20|91833|WD repeat domain 20##EU831845|WDR20|91833|WD repeat domain 20##AF327354|WDR20|91833|WD repeat domain 20##BX248274|WDR20|91833|WD repeat domain 20##AK094747|MOK|5891|MOK protein kinase##BC053536|MOK|5891|MOK protein kinase##BC026069|MOK|5891|MOK protein kinase##AK302349|MOK|5891|MOK protein kinase##AK312778|MOK|5891|MOK protein kinase##AB022694|MOK|5891|MOK protein kinase##NM_014226|MOK|5891|MOK protein kinase	1.994573	0.0	
chr19	2085317	2085477	reg1000070.p2	19.502	+	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	-154	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-34164	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-39156	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	10868	-	TSC_hg19_v1_chr19_-_2096297 AL832474	10897	-	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	11463	+	AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4	0.999297	0.0	
chr19	46320572	46320700	reg1000062.p1	19.457	+	BC057785 AB587490 AM393487 BC146683 BC136351 BC136352 BC144018 AK098837 AK223347 AL136761 NM_030785	-2118	-	TSC_hg19_v1_chr19_-_46296053 NM_004943	-24705	-	L19267 TSC_hg19_v1_chr19_-_46295709	-24958	-	AF049526 TSC_hg19_v1_chr19_-_46366406 Y10931 AB210010 BC030214 AK300252 BX649165 AK130602 NM_004819	45808	-	BC016024 NM_004497 TSC_hg19_v1_chr19_+_46367583 AK223473 AB464526 BT006720 CU677549 L12141	46979	+	AK223622 TSC_hg19_v1_chr19_-_46389398 AK315060 BC038222 NM_015649 AY278022 BC039002	68726	-	BC057785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AM393487|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC146683|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136351|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136352|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC144018|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK098837|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK223347|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AL136761|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##NM_030785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##NM_004943|DMWD|1762|dystrophia myotonica, WD repeat containing##L19267|DMWD|1762|dystrophia myotonica, WD repeat containing##AF049526|SYMPK|8189|symplekin##Y10931|SYMPK|8189|symplekin##AB210010|SYMPK|8189|symplekin##BC030214|SYMPK|8189|symplekin##AK300252|SYMPK|8189|symplekin##BX649165|SYMPK|8189|symplekin##AK130602|SYMPK|8189|symplekin##NM_004819|SYMPK|8189|symplekin##BC016024|FOXA3|3171|forkhead box A3##NM_004497|FOXA3|3171|forkhead box A3##AK223473|FOXA3|3171|forkhead box A3##BT006720|FOXA3|3171|forkhead box A3##L12141|FOXA3|3171|forkhead box A3##AK223622|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AK315060|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC038222|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##NM_015649|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AY278022|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC039002|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1	1.96466	1.74882	CTCF.p2:-1:0.941	denovo_WM_7:45:0.933	denovo_WM_7:60:0.946	CTCF.p2:-92:0.808
chr4	74519485	74519618	reg1000067.p1	19.450	+	AY217664 BC058835 NM_177532 AY217665 CR749283 AK126346 NM_201431	-33332	-	AK290556 NM_001133 BC109020 BC109021 L35486	-172081	+	NM_001134 V01514 AK297669 TSC_hg19_v1_chr4_+_74301937 AK297674 AK314817 BC027881 DQ890942 DQ894103 CU693306	-217596	+	NM_000584 Y00787 AK131067 AK311874 M17017 M26383 BC013615 AF043337 AB590232 DQ890564 DQ893727 BT007067 CR542151 Z11686	86747	+	NM_002993 AK311981 U81234 BC013744 DQ891500 DQ894692 AB463491	182818	+	NM_002620 BC130653 BC130657 HQ258042	199492	+	AY217664|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##BC058835|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_177532|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AY217665|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##CR749283|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK126346|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_201431|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK290556|AFM|173|afamin##NM_001133|AFM|173|afamin##BC109020|AFM|173|afamin##BC109021|AFM|173|afamin##L35486|AFM|173|afamin##NM_001134|AFP|174|alpha-fetoprotein##V01514|AFP|174|alpha-fetoprotein##AK297669|AFP|174|alpha-fetoprotein##AK297674|AFP|174|alpha-fetoprotein##AK314817|AFP|174|alpha-fetoprotein##BC027881|AFP|174|alpha-fetoprotein##DQ890942|AFP|174|alpha-fetoprotein##DQ894103|AFP|174|alpha-fetoprotein##NM_000584|IL8|3576|interleukin 8##Y00787|IL8|3576|interleukin 8##AK131067|IL8|3576|interleukin 8##AK311874|IL8|3576|interleukin 8##M17017|IL8|3576|interleukin 8##M26383|IL8|3576|interleukin 8##BC013615|IL8|3576|interleukin 8##DQ890564|IL8|3576|interleukin 8##DQ893727|IL8|3576|interleukin 8##BT007067|IL8|3576|interleukin 8##CR542151|IL8|3576|interleukin 8##Z11686|IL8|3576|interleukin 8##NM_002993|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##AK311981|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##U81234|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##BC013744|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ891500|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ894692|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##NM_002620|PF4V1|5197|platelet factor 4 variant 1##BC130653|PF4V1|5197|platelet factor 4 variant 1##BC130657|PF4V1|5197|platelet factor 4 variant 1##HQ258042|PF4V1|5197|platelet factor 4 variant 1	0.999522	0.790479	CTCF.p2:4:0.790
chrX	130897901	130898031	reg1000071.p3	19.392	+	BC137050 AB529233 NM_001004486	-219968	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-474554	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-474704	-	TSC_hg19_v1_chrX_-_130964633 AK097911	66685	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	259355	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	259674	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr2	30937104	30937254	reg1000072.p1	19.327	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	-267031	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	-482677	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-567303	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	93114	-	AK122747 NM_001253827	415318	-	AY358758 AK225808 TSC_hg19_v1_chr2_-_31361308	424119	-	BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13##AK122747|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253827|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AY358758|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AK225808|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)	2.674832	0.94449	denovo_WM_7:7:0.651	denovo_WM_7:22:0.650	denovo_WM_7:37:0.655	CTCF.p2:-42:0.944
chr2	29117252	29117409	reg1000068.p1	19.238	+	AK225551 CU674472 CU679681 TSC_hg19_v1_chr2_-_29093160 AK308821 BC010365 AL136689 BC000952 AK000635 AK225524 NM_017910	-24171	-	NM_001008779 AB590634 AY820303 AY820304	-78459	+	BC093005 NM_001142634 NM_182756 BC047224	-83623	+	TSC_hg19_v1_chr2_+_29117555 NM_015131 D26488	208	+	AK296977 NM_199280	86833	+	NM_001029883	179796	-	AK225551|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##BC010365|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##AL136689|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##BC000952|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##AK225524|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##NM_017910|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##NM_001008779|SPDYA|245711|speedy homolog A (Xenopus laevis)##AY820303|SPDYA|245711|speedy homolog A (Xenopus laevis)##AY820304|SPDYA|245711|speedy homolog A (Xenopus laevis)##BC093005|SPDYA|245711|speedy homolog A (Xenopus laevis)##NM_001142634|SPDYA|245711|speedy homolog A (Xenopus laevis)##NM_182756|SPDYA|245711|speedy homolog A (Xenopus laevis)##BC047224|SPDYA|245711|speedy homolog A (Xenopus laevis)##NM_015131|WDR43|23160|WD repeat domain 43##D26488|WDR43|23160|WD repeat domain 43##AK296977|FAM179A|165186|family with sequence similarity 179, member A##NM_199280|FAM179A|165186|family with sequence similarity 179, member A##NM_001029883|C2orf71|388939|chromosome 2 open reading frame 71	0.994815	0.0	denovo_WM_7:-26:0.736
chr5	123006807	123006942	reg1000080.p1	19.230	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-158992	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-247730	-	NM_001136239 AK297992 AF272898 AF272899	-582030	+	BC131507 AB033107 BC151226 NM_020747	1073914	-	NM_001146319 AK316288 AK300154	2688940	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	2751969	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	1.482428	0.961391	CTCF.p2:-19:0.961	denovo_WM_7:24:0.319	denovo_WM_7:39:0.317
chr13	77599810	77599943	reg1000079.p1	19.225	+	TSC_hg19_v1_chr13_+_77566215 NM_006493 AB528107 AK075109 AK304001	-33707	+	TSC_hg19_v1_chr13_-_77460541 AF359381 AK128363 AK311268 AK311543 NM_138444	-139269	-	BC013764 TSC_hg19_v1_chr13_-_77460431	-139476	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	1406	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	1455	-	NM_015057 TSC_hg19_v1_chr13_-_77901230	301327	-	NM_006493|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK075109|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK304001|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AF359381|KCTD12|115207|potassium channel tetramerisation domain containing 12##AK128363|KCTD12|115207|potassium channel tetramerisation domain containing 12##NM_138444|KCTD12|115207|potassium channel tetramerisation domain containing 12##BC013764|KCTD12|115207|potassium channel tetramerisation domain containing 12##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_015057|MYCBP2|23077|MYC binding protein 2	0.998602	0.0	
chr6	151773486	151773618	reg1000089.p1	19.213	+	AK022972 NM_024573	-131	+	TSC_hg19_v1_chr6_-_151773262 BC119683 AK000634 BC106065 AK292339 NM_017909	-294	-	TSC_hg19_v1_chr6_-_151712650 BC020172 NM_020861 AK092886 AX747790 AK291942	-60842	-	AK298490 TSC_hg19_v1_chr6_+_151773653 AK310840 AL110241 BC011348 CU679902	90	+	NM_025059 BC060803 BC035003 AK225330 AK026958	41666	+	NM_001122742 U68068 AK309580 AB588629 AB588630	238141	+	AK022972|C6orf211|79624|chromosome 6 open reading frame 211##NM_024573|C6orf211|79624|chromosome 6 open reading frame 211##BC119683|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##AK000634|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##BC106065|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##AK292339|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##NM_017909|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##BC020172|ZBTB2|57621|zinc finger and BTB domain containing 2##NM_020861|ZBTB2|57621|zinc finger and BTB domain containing 2##AK092886|ZBTB2|57621|zinc finger and BTB domain containing 2##AK291942|ZBTB2|57621|zinc finger and BTB domain containing 2##AK298490|C6orf211|79624|chromosome 6 open reading frame 211##AK310840|C6orf211|79624|chromosome 6 open reading frame 211##AL110241|C6orf211|79624|chromosome 6 open reading frame 211##BC011348|C6orf211|79624|chromosome 6 open reading frame 211##NM_025059|C6orf97|80129|chromosome 6 open reading frame 97##BC060803|C6orf97|80129|chromosome 6 open reading frame 97##BC035003|C6orf97|80129|chromosome 6 open reading frame 97##AK225330|C6orf97|80129|chromosome 6 open reading frame 97##AK026958|C6orf97|80129|chromosome 6 open reading frame 97##NM_001122742|ESR1|2099|estrogen receptor 1##U68068|ESR1|2099|estrogen receptor 1##AK309580|ESR1|2099|estrogen receptor 1##AB588629|ESR1|2099|estrogen receptor 1##AB588630|ESR1|2099|estrogen receptor 1	0.0	0.077651	
chrX	130880540	130880660	reg1000075.p1	19.207	+	BC137050 AB529233 NM_001004486	-202602	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-457188	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-457338	-	TSC_hg19_v1_chrX_-_130964633 AK097911	84051	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	276721	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	277040	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.063352	0.021805	
chrX	130887348	130887462	reg1000052.p2	19.139	+	BC137050 AB529233 NM_001004486	-209407	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-463993	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-464143	-	TSC_hg19_v1_chrX_-_130964633 AK097911	77246	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	269916	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	270235	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.879363	0.0	denovo_WM_7:102:0.847
chr12	56967264	56967401	reg1000090.p2	19.035	+	TSC_hg19_v1_chr12_+_56915603 NM_002898 BC072679 AK308885 AK293315 AK304540 D28483 AK299580 BC027863 CU693300	-51635	+	AK289471 BC025661 BC036929 AK000467 AF110330 AK303772 AF223944 AK294822 BC119767 BC119768 BC059370 BC048344 NM_013267	-85292	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	-104980	+	AF000422 TSC_hg19_v1_chr12_-_57006969	39584	-	AK023830 TSC_hg19_v1_chr12_-_57009380	42044	-	AK023842 TSC_hg19_v1_chr12_-_57024088	56710	-	NM_002898|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC072679|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK308885|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK293315|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK304540|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##D28483|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK299580|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC027863|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK289471|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC025661|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC036929|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK000467|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF110330|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK303772|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF223944|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK294822|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119767|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119768|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC059370|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC048344|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_013267|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4##AF000422|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023830|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023842|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A	1.90218	0.992526	CTCF.p2:14:0.993	denovo_WM_7:-48:0.852	denovo_WM_7:-63:0.433	denovo_WM_7:-64:0.518
chr16	74700967	74701147	reg1000081.p2	18.994	+	TSC_hg19_v1_chr16_-_74700775 NM_018124	-280	-	TSC_hg19_v1_chr16_-_74700758 AK291200	-305	-	TSC_hg19_v1_chr16_-_74700738 BC059371	-327	-	BC028141 AK091708 AX747141 NM_001142497 NM_152649	33680	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	107528	-	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	107667	-	NM_018124|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##BC059371|RFWD3|55159|ring finger and WD repeat domain 3##BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase	1.986161	0.0	denovo_WM_7:-3:0.315	denovo_WM_7:-4:0.315	denovo_WM_7:-5:0.315	denovo_WM_7:-27:0.690
chr6	160141782	160141935	reg1000088.p2	18.953	+	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	-27496	-	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	-27608	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	-551428	+	TSC_hg19_v1_chr6_+_160148149 AK290854 AF374416 NM_004906 NM_152858 BC000383 BC004432 BC069192	6314	+	BC028180 TSC_hg19_v1_chr6_+_160148499	6640	+	TSC_hg19_v1_chr6_+_160148611 D14661 NM_152857	6755	+	NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AK290854|WTAP|9589|Wilms tumor 1 associated protein##AF374416|WTAP|9589|Wilms tumor 1 associated protein##NM_004906|WTAP|9589|Wilms tumor 1 associated protein##NM_152858|WTAP|9589|Wilms tumor 1 associated protein##BC000383|WTAP|9589|Wilms tumor 1 associated protein##BC004432|WTAP|9589|Wilms tumor 1 associated protein##BC069192|WTAP|9589|Wilms tumor 1 associated protein##BC028180|WTAP|9589|Wilms tumor 1 associated protein##D14661|WTAP|9589|Wilms tumor 1 associated protein##NM_152857|WTAP|9589|Wilms tumor 1 associated protein	1.307022	0.977436	CTCF.p2:-12:0.977	denovo_WM_7:28:0.234	denovo_WM_7:43:0.233
chr12	54585434	54585550	reg1000078.p2	18.909	+	BC088352 BC000417 TSC_hg19_v1_chr12_-_54582755 AK091468 AX747003 NM_001243789 NM_001243790 BC105607 AK001789 AK001235 AK222473 AK290274 NM_001243787 NM_001243788 NM_001243791 NM_014311	-2806	-	BC030212 TSC_hg19_v1_chr12_-_54541132	-44411	-	TSC_hg19_v1_chr12_+_54519846 BC009385	-65634	+	BC006821 NM_001127322 TSC_hg19_v1_chr12_-_54653330	67832	-	NM_001127321 TSC_hg19_v1_chr12_-_54653370	67879	-	TSC_hg19_v1_chr12_-_54673880 L07515 S62077	88390	-	BC088352|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC000417|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK091468|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243790|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC105607|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001235|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK222473|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK290274|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243787|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243788|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243791|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_014311|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC009385|LOC400043|400043|uncharacterized LOC400043##BC006821|CBX5|23468|chromobox homolog 5##NM_001127322|CBX5|23468|chromobox homolog 5##NM_001127321|CBX5|23468|chromobox homolog 5##L07515|CBX5|23468|chromobox homolog 5##S62077|CBX5|23468|chromobox homolog 5	0.987455	0.126093	
chr12	57881602	57881761	reg1000101.p1	18.877	+	AK304107 AB051853 NM_032496	-8051	-	TSC_hg19_v1_chr12_-_57873391 AK092763 AX747713 NM_001080157	-8287	-	AK301095 AK057573 AB030239 NM_001080156	-10002	-	NM_004990 TSC_hg19_v1_chr12_+_57881850 BC065187 AK293945 AK303349 D84224	111	+	AK092986 AK222767 AX747839 TSC_hg19_v1_chr12_+_57881853 AK290857 BC011639 X94754 BC002384 BC006328 BC011849 AB590802 BT007338 BC015011	198	+	TSC_hg19_v1_chr12_-_57914295 AK316581 BC003637 BC107859 S40706 AY461580 NM_001195053 NM_001195054 NM_001195055 NM_001195056 NM_001195057 NM_004083	32613	-	AK304107|ARHGAP9|64333|Rho GTPase activating protein 9##AB051853|ARHGAP9|64333|Rho GTPase activating protein 9##NM_032496|ARHGAP9|64333|Rho GTPase activating protein 9##AK092763|ARHGAP9|64333|Rho GTPase activating protein 9##NM_001080157|ARHGAP9|64333|Rho GTPase activating protein 9##AK301095|ARHGAP9|64333|Rho GTPase activating protein 9##AK057573|ARHGAP9|64333|Rho GTPase activating protein 9##AB030239|ARHGAP9|64333|Rho GTPase activating protein 9##NM_001080156|ARHGAP9|64333|Rho GTPase activating protein 9##NM_004990|MARS|4141|methionyl-tRNA synthetase##BC065187|MARS|4141|methionyl-tRNA synthetase##AK293945|MARS|4141|methionyl-tRNA synthetase##AK303349|MARS|4141|methionyl-tRNA synthetase##D84224|MARS|4141|methionyl-tRNA synthetase##AK092986|MARS|4141|methionyl-tRNA synthetase##AK222767|MARS|4141|methionyl-tRNA synthetase##AK290857|MARS|4141|methionyl-tRNA synthetase##BC011639|MARS|4141|methionyl-tRNA synthetase##X94754|MARS|4141|methionyl-tRNA synthetase##BC002384|MARS|4141|methionyl-tRNA synthetase##BC006328|MARS|4141|methionyl-tRNA synthetase##BC011849|MARS|4141|methionyl-tRNA synthetase##BT007338|MARS|4141|methionyl-tRNA synthetase##BC015011|MARS|4141|methionyl-tRNA synthetase##AK316581|DDIT3|1649|DNA-damage-inducible transcript 3##BC003637|DDIT3|1649|DNA-damage-inducible transcript 3##BC107859|DDIT3|1649|DNA-damage-inducible transcript 3##S40706|DDIT3|1649|DNA-damage-inducible transcript 3##AY461580|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195053|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195054|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195055|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195056|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195057|DDIT3|1649|DNA-damage-inducible transcript 3##NM_004083|DDIT3|1649|DNA-damage-inducible transcript 3	0.999461	0.0	
chrX	130862710	130862845	reg1000086.p1	18.876	+	BC137050 AB529233 NM_001004486	-184779	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-439365	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-439515	-	TSC_hg19_v1_chrX_-_130964633 AK097911	101874	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	294544	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	294863	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.021805	
chr19	10491291	10491443	reg1000087.p1	18.820	+	TSC_hg19_v1_chr19_-_10491245 AK308360 NM_003331 AK303627 AK308379	-88	-	TSC_hg19_v1_chr19_-_10491192 X54637 AK222672 BC014243	-176	-	AF340060 AF340061 AB463787 BC040123 S50015 AK309643 BC058903 X69819 TSC_hg19_v1_chr19_-_10450307 AK301071 AX746321 X69711 BC034409 BC046121 AK312826 AK226023 NM_002162	-41058	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	22802	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	22846	-	TSC_hg19_v1_chr19_-_10514250 NM_007065	22889	-	AK308360|TYK2|7297|tyrosine kinase 2##NM_003331|TYK2|7297|tyrosine kinase 2##AK303627|TYK2|7297|tyrosine kinase 2##AK308379|TYK2|7297|tyrosine kinase 2##X54637|TYK2|7297|tyrosine kinase 2##AK222672|TYK2|7297|tyrosine kinase 2##BC014243|TYK2|7297|tyrosine kinase 2##AF340060|ICAM3|3385|intercellular adhesion molecule 3##AF340061|ICAM3|3385|intercellular adhesion molecule 3##BC040123|ICAM3|3385|intercellular adhesion molecule 3##S50015|ICAM3|3385|intercellular adhesion molecule 3##AK309643|ICAM3|3385|intercellular adhesion molecule 3##BC058903|ICAM3|3385|intercellular adhesion molecule 3##X69819|ICAM3|3385|intercellular adhesion molecule 3##AX746321|ICAM3|3385|intercellular adhesion molecule 3##X69711|ICAM3|3385|intercellular adhesion molecule 3##BC034409|ICAM3|3385|intercellular adhesion molecule 3##BC046121|ICAM3|3385|intercellular adhesion molecule 3##AK312826|ICAM3|3385|intercellular adhesion molecule 3##AK226023|ICAM3|3385|intercellular adhesion molecule 3##NM_002162|ICAM3|3385|intercellular adhesion molecule 3##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)	0.934356	0.0	denovo_WM_7:-19:0.591	denovo_WM_7:-20:0.216
chr1	27481718	27481898	reg1000091.p1	18.815	+	M96066 S68616 NM_003047 TSC_hg19_v1_chr1_-_27481521	-347	-	TSC_hg19_v1_chr1_-_27339448 AK122816	-142354	-	BC012790 BC014160 NM_052943 TSC_hg19_v1_chr1_-_27339338	-142474	-	NM_015023 TSC_hg19_v1_chr1_+_27561056	79226	+	TSC_hg19_v1_chr1_+_27561124 AK315564	79319	+	TSC_hg19_v1_chr1_+_27561153 BC032523	79354	+	M96066|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##S68616|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##NM_003047|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##AK122816|FAM46B|115572|family with sequence similarity 46, member B##BC012790|FAM46B|115572|family with sequence similarity 46, member B##BC014160|FAM46B|115572|family with sequence similarity 46, member B##NM_052943|FAM46B|115572|family with sequence similarity 46, member B##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1	0.999105	0.0	
chr19	3987905	3988050	reg1000092.p2	18.806	+	AK297398 AK298498 NM_001961 TSC_hg19_v1_chr19_-_3985462	-2515	-	TSC_hg19_v1_chr19_-_3985455 BC126259 BC136313 BC068002 BC006547 AK299225	-2576	-	TSC_hg19_v1_chr19_-_3984195 AB527843 AY942181 HQ258667 X51466 Z11692	-3726	-	TSC_hg19_v1_chr19_+_4007733 BC066895 AK022481 BC029874 NM_015897 AK222726 AB464092 AF077952 DQ892419 DQ895633 BC010047	19752	+	TSC_hg19_v1_chr19_-_4065504 BC084568	77519	-	BC113511 TSC_hg19_v1_chr19_-_4066828 AF000561 NM_015898 BC064505	78840	-	AK297398|EEF2|1938|eukaryotic translation elongation factor 2##AK298498|EEF2|1938|eukaryotic translation elongation factor 2##NM_001961|EEF2|1938|eukaryotic translation elongation factor 2##BC126259|EEF2|1938|eukaryotic translation elongation factor 2##BC136313|EEF2|1938|eukaryotic translation elongation factor 2##BC006547|EEF2|1938|eukaryotic translation elongation factor 2##AK299225|EEF2|1938|eukaryotic translation elongation factor 2##AY942181|EEF2|1938|eukaryotic translation elongation factor 2##HQ258667|EEF2|1938|eukaryotic translation elongation factor 2##X51466|EEF2|1938|eukaryotic translation elongation factor 2##Z11692|EEF2|1938|eukaryotic translation elongation factor 2##BC066895|PIAS4|51588|protein inhibitor of activated STAT, 4##AK022481|PIAS4|51588|protein inhibitor of activated STAT, 4##BC029874|PIAS4|51588|protein inhibitor of activated STAT, 4##NM_015897|PIAS4|51588|protein inhibitor of activated STAT, 4##AK222726|PIAS4|51588|protein inhibitor of activated STAT, 4##AF077952|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ892419|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ895633|PIAS4|51588|protein inhibitor of activated STAT, 4##BC010047|PIAS4|51588|protein inhibitor of activated STAT, 4##BC084568|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC113511|ZBTB7A|51341|zinc finger and BTB domain containing 7A##AF000561|ZBTB7A|51341|zinc finger and BTB domain containing 7A##NM_015898|ZBTB7A|51341|zinc finger and BTB domain containing 7A	1.853917	0.331815	CTCF.p2:-14:0.332	denovo_WM_7:31:0.807	denovo_WM_7:46:0.807
chr7	74071915	74072064	reg1000048.p2	18.787	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-203554	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-203681	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-203825	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	32	+	TSC_hg19_v1_chr7_+_74072046 BC070484	55	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	133	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	2.972844	0.0	denovo_WM_7:-3:0.713	denovo_WM_7:11:0.662	denovo_WM_7:27:0.806
chr12	122028177	122028293	reg1000043.p2	18.717	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-9321	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-9976	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-123161	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	36408	+	BC057760 NM_173855	79324	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	122509	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	1.967431	0.0	denovo_WM_7:-64:0.345	denovo_WM_7:-65:0.345	denovo_WM_7:-66:0.276
chr14	54955753	54955913	reg1000099.p1	18.699	+	TSC_hg19_v1_chr14_-_54955728 AB001106 BX647679 NM_004124	-78	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	-148	-	TSC_hg19_v1_chr14_-_54908095 BX248284 AY358635 AK074781 AK307074 AK311897 AF070654 AF104398 NM_005776 BC103741	-47717	-	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	20778	+	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	78511	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	78803	+	AB001106|GMFB|2764|glia maturation factor, beta##BX647679|GMFB|2764|glia maturation factor, beta##NM_004124|GMFB|2764|glia maturation factor, beta##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta##BX248284|CNIH|10175|cornichon homolog (Drosophila)##AY358635|CNIH|10175|cornichon homolog (Drosophila)##AK074781|CNIH|10175|cornichon homolog (Drosophila)##AK307074|CNIH|10175|cornichon homolog (Drosophila)##AK311897|CNIH|10175|cornichon homolog (Drosophila)##AF070654|CNIH|10175|cornichon homolog (Drosophila)##AF104398|CNIH|10175|cornichon homolog (Drosophila)##NM_005776|CNIH|10175|cornichon homolog (Drosophila)##BC103741|CNIH|10175|cornichon homolog (Drosophila)##AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A	1.978091	0.128881	denovo_WM_7:11:0.562	denovo_WM_7:12:0.305	denovo_WM_7:26:0.262	denovo_WM_7:27:0.519
chrX	130902366	130902496	reg1000093.p1	18.662	+	BC137050 AB529233 NM_001004486	-224433	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-479019	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-479169	-	TSC_hg19_v1_chrX_-_130964633 AK097911	62220	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	254890	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	255209	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.015425	
chrX	123094450	123094630	reg1000064.p2	18.606	+	TSC_hg19_v1_chrX_+_123094397 NM_001042749 AK098737 BX640970 AK298633 AK313559	-16	+	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	-100598	+	TSC_hg19_v1_chrX_-_122866897 NM_001081550	-227643	-	NM_001042750 NM_001042751 NM_006603 TSC_hg19_v1_chrX_+_123095573 AL831939 BX641002 CR749433 BX641003	1033	+	TSC_hg19_v1_chrX_+_123095638 BC001765	1097	+	AK026678 TSC_hg19_v1_chrX_+_123234596	139990	+	NM_001042749|STAG2|10735|stromal antigen 2##AK098737|STAG2|10735|stromal antigen 2##BX640970|STAG2|10735|stromal antigen 2##AK298633|STAG2|10735|stromal antigen 2##AK313559|STAG2|10735|stromal antigen 2##AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis##NM_001081550|THOC2|57187|THO complex 2##NM_001042750|STAG2|10735|stromal antigen 2##NM_001042751|STAG2|10735|stromal antigen 2##NM_006603|STAG2|10735|stromal antigen 2##AL831939|STAG2|10735|stromal antigen 2##BX641002|STAG2|10735|stromal antigen 2##CR749433|STAG2|10735|stromal antigen 2##BX641003|STAG2|10735|stromal antigen 2##BC001765|STAG2|10735|stromal antigen 2##AK026678|STAG2|10735|stromal antigen 2	2.974069	0.0	denovo_WM_7:-45:0.273	denovo_WM_7:-48:0.485	denovo_WM_7:-63:0.397	denovo_WM_7:-64:0.205	denovo_WM_7:-78:0.297	denovo_WM_7:-79:0.501
chr8	76314396	76314530	reg1000108.p1	18.591	+	NM_031461 TSC_hg19_v1_chr8_+_75896739 AY358564 BC020514 AK314048 AL834301 AF142573	-417554	+	CR749657 NM_015886	-577692	+	TSC_hg19_v1_chr8_+_75262637 AB551556 AB551557 AB551558 NM_018972 BC024939 BC035450 NM_001040875 AK292572 AK295594 Y17849	-1051773	+	TSC_hg19_v1_chr8_+_76320132 BC054009 Z49826	5725	+	BX571750 NM_004133 EU832451 HQ692842	137751	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	1279047	+	NM_031461|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AY358564|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##BC020514|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AK314048|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AL834301|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AF142573|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##CR749657|PI15|51050|peptidase inhibitor 15##NM_015886|PI15|51050|peptidase inhibitor 15##AB551556|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AB551557|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AB551558|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##NM_018972|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##BC024939|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##BC035450|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##NM_001040875|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AK292572|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AK295594|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##Y17849|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##BC054009|HNF4G|3174|hepatocyte nuclear factor 4, gamma##Z49826|HNF4G|3174|hepatocyte nuclear factor 4, gamma##BX571750|HNF4G|3174|hepatocyte nuclear factor 4, gamma##NM_004133|HNF4G|3174|hepatocyte nuclear factor 4, gamma##EU832451|HNF4G|3174|hepatocyte nuclear factor 4, gamma##HQ692842|HNF4G|3174|hepatocyte nuclear factor 4, gamma##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4	0.999252	0.709335	CTCF.p2:-27:0.709
chr11	68041240	68041384	reg1000084.p2	18.588	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-1854	-	TSC_hg19_v1_chr11_-_68039418 AF264781	-1926	-	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	-60333	-	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	38777	+	AF088027 TSC_hg19_v1_chr11_+_68115450	74124	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	186897	+	NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3	2.987493	0.0	denovo_WM_7:-66:0.859	denovo_WM_7:83:0.298	denovo_WM_7:84:0.298	denovo_WM_7:85:0.298
chr12	76328412	76328573	reg1000103.p2	18.505	+	BC005225 TSC_hg19_v1_chr12_-_75905414 NM_007043	-423073	-	BC033887 TSC_hg19_v1_chr12_-_75905393 BC014034 BC026107	-423097	-	AK022133 TSC_hg19_v1_chr12_-_75905382 BC016778 U55766	-423107	-	AF220656 TSC_hg19_v1_chr12_-_76424608	96055	-	TSC_hg19_v1_chr12_-_76425369 BC126425 BC130427 BC110820 U92983 BC018929	96798	-	TSC_hg19_v1_chr12_-_76425376 AK304224 AB587598 NM_007350 Z50194	97035	-	BC005225|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##NM_007043|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC033887|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC014034|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC026107|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AK022133|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC016778|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##U55766|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AF220656|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC126425|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC130427|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC110820|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##U92983|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC018929|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##AK304224|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##NM_007350|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##Z50194|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1	0.999916	0.0	
chr19	47343892	47344017	reg1000123.p1	18.463	+	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-52232	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-52681	-	AK293433 AK301661 NM_001145144	-53412	-	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	10177	-	AB051509 AF159851 BC131565 BC150257 NM_004491	77978	+	TSC_hg19_v1_chr19_+_47523068 BC039016	179122	+	AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK293433|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK301661|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145144|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1	1.356956	0.820677	CTCF.p2:-13:0.821
chr10	79789307	79789447	reg1000105.p1	18.450	+	TSC_hg19_v1_chr10_-_79789304 NM_007055	-63	-	AF021351 AY091459 AB384941 TSC_hg19_v1_chr10_-_79789272 BC041089 AK300329	-156	-	AB384502 NM_004747 AB011155 BC146794 TSC_hg19_v1_chr10_-_79686514	-102975	-	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	4179	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	4254	+	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	1039411	+	NM_007055|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AF021351|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AY091459|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC041089|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AK300329|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##NM_004747|DLG5|9231|discs, large homolog 5 (Drosophila)##AB011155|DLG5|9231|discs, large homolog 5 (Drosophila)##BC146794|DLG5|9231|discs, large homolog 5 (Drosophila)##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.998094	0.30863	denovo_WM_7:1:0.234	denovo_WM_7:2:0.234	denovo_WM_7:3:0.234	denovo_WM_7:4:0.234	CTCF.p2:32:0.287
chr11	45315279	45315406	reg1000144.p1	18.389	+	AK308841 AB384203 AM393283 BC093830 AK291009 BC093832 AL512743 AB037848 NM_001247987 NM_020826	-7592	-	AF275818 NM_020229	-199779	+	TSC_hg19_v1_chr11_-_44972435 AK292837 AK096176 AK056379 AK026607 AK054815 NM_001076787 NM_006034	-342925	-	TSC_hg19_v1_chr11_-_45687157 AK311168 BC022567 NM_003654	371842	-	NM_001145265 NM_001145266	510280	+	TSC_hg19_v1_chr11_+_45825944 AK225428 AK002182 AK091245	510572	+	AK308841|SYT13|57586|synaptotagmin XIII##AM393283|SYT13|57586|synaptotagmin XIII##BC093830|SYT13|57586|synaptotagmin XIII##AK291009|SYT13|57586|synaptotagmin XIII##BC093832|SYT13|57586|synaptotagmin XIII##AL512743|SYT13|57586|synaptotagmin XIII##AB037848|SYT13|57586|synaptotagmin XIII##NM_001247987|SYT13|57586|synaptotagmin XIII##NM_020826|SYT13|57586|synaptotagmin XIII##AF275818|PRDM11|56981|PR domain containing 11##NM_020229|PRDM11|56981|PR domain containing 11##AK292837|TP53I11|9537|tumor protein p53 inducible protein 11##AK096176|TP53I11|9537|tumor protein p53 inducible protein 11##AK056379|TP53I11|9537|tumor protein p53 inducible protein 11##AK026607|TP53I11|9537|tumor protein p53 inducible protein 11##AK054815|TP53I11|9537|tumor protein p53 inducible protein 11##NM_001076787|TP53I11|9537|tumor protein p53 inducible protein 11##NM_006034|TP53I11|9537|tumor protein p53 inducible protein 11##AK311168|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##BC022567|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_003654|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_001145265|SLC35C1|55343|solute carrier family 35, member C1##NM_001145266|SLC35C1|55343|solute carrier family 35, member C1##AK225428|SLC35C1|55343|solute carrier family 35, member C1##AK002182|SLC35C1|55343|solute carrier family 35, member C1##AK091245|SLC35C1|55343|solute carrier family 35, member C1	1.904334	0.389763	CTCF.p2:-5:0.390	denovo_WM_7:52:0.486	denovo_WM_7:67:0.487
chr1	161195620	161195780	reg1000096.p1	18.384	+	TSC_hg19_v1_chr1_-_161193419 AK312034 BC005282 NM_001643	-2302	-	BT006786 AB590164 DQ892493 DQ895705 AB106565 M29882 X00955 TSC_hg19_v1_chr1_-_161193333	-2437	-	TSC_hg19_v1_chr1_+_161185087 M33195 NM_004106 BC033872 AB590329 DQ890782 EU176502	-10603	+	NM_032174 TSC_hg19_v1_chr1_+_161195849 AK022832 AK027704 AK297848 BX537951 AK297831	157	+	AK310773 AY572806 AY572807 AY572808 AY572809 AY572810 AY572811 AY572812 AY572813 AY572814 AY572815 AY572816 AY572817 AY572818 AY572819 AY572820 AY572821 AY572822 AY572823 AY572824 AY572825 AY572826 AY572827 BC121120 BC121121 BC030972 BC069626 BC069651 AK316208 AK303757 NM_001077469 NM_001077470 NM_001077471 NM_001077472 NM_001077473 NM_001077474 NM_001077475 NM_001077476 NM_001077477 NM_001077478 NM_001077479 NM_001077480 NM_001077481 NM_001077482 NM_005122 AK303796	12256	-	BC028905 NM_001102566 TSC_hg19_v1_chr1_+_161228534 BC067884 BC147003 BC147004	32865	+	AK312034|APOA2|336|apolipoprotein A-II##BC005282|APOA2|336|apolipoprotein A-II##NM_001643|APOA2|336|apolipoprotein A-II##BT006786|APOA2|336|apolipoprotein A-II##DQ892493|APOA2|336|apolipoprotein A-II##DQ895705|APOA2|336|apolipoprotein A-II##AB106565|APOA2|336|apolipoprotein A-II##M29882|APOA2|336|apolipoprotein A-II##X00955|APOA2|336|apolipoprotein A-II##M33195|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##NM_004106|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##BC033872|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##DQ890782|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##EU176502|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##NM_032174|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK022832|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK027704|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297848|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BX537951|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297831|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK310773|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572806|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572807|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572808|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572809|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572810|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572811|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572812|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572813|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572814|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572815|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572816|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572817|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572818|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572819|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572820|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572821|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572822|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572823|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572824|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572825|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572826|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572827|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121120|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121121|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC030972|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069626|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069651|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK316208|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303757|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077469|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077470|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077471|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077472|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077473|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077474|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077475|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077476|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077477|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077478|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077479|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077480|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077481|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077482|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_005122|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303796|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC028905|PCP4L1|654790|Purkinje cell protein 4 like 1##NM_001102566|PCP4L1|654790|Purkinje cell protein 4 like 1##BC067884|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147003|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147004|PCP4L1|654790|Purkinje cell protein 4 like 1	0.990834	0.0	
chr10	88699233	88699349	reg1000085.p1	18.378	+	TSC_hg19_v1_chr10_+_88516526 NM_004329 BC028383 AK291764 Z22535	-182804	+	AK304760 TSC_hg19_v1_chr10_+_88428267 AK300692 AK297871 NM_001080116 AJ133766 BC010929 NM_001080114 NM_001080115 NM_001171611 NM_007078 AB014513 AF276807 AF276808 AF276809 AJ133767 AJ133768	-270936	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	-271105	+	TSC_hg19_v1_chr10_-_88717330 BC072456 AK304727 AK023527 AK293822 BC094744 BC064415 AK308401 NM_024756	18080	-	NM_003087 AK223367 AK311652 BC014098 AK312141 AF017256 AF411524 EU019993 AF010126 DQ892334 DQ892505 DQ895719 EU176715 AB464279 CR541788 CR541790	19079	+	NM_006829 TSC_hg19_v1_chr10_+_88728238 AK304688 AK312031 BC004471 D45370	28937	+	NM_004329|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC028383|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK291764|BMPR1A|657|bone morphogenetic protein receptor, type IA##Z22535|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK304760|LDB3|11155|LIM domain binding 3##AK300692|LDB3|11155|LIM domain binding 3##AK297871|LDB3|11155|LIM domain binding 3##NM_001080116|LDB3|11155|LIM domain binding 3##AJ133766|LDB3|11155|LIM domain binding 3##BC010929|LDB3|11155|LIM domain binding 3##NM_001080114|LDB3|11155|LIM domain binding 3##NM_001080115|LDB3|11155|LIM domain binding 3##NM_001171611|LDB3|11155|LIM domain binding 3##NM_007078|LDB3|11155|LIM domain binding 3##AB014513|LDB3|11155|LIM domain binding 3##AF276807|LDB3|11155|LIM domain binding 3##AF276808|LDB3|11155|LIM domain binding 3##AF276809|LDB3|11155|LIM domain binding 3##AJ133767|LDB3|11155|LIM domain binding 3##AJ133768|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3##BC072456|MMRN2|79812|multimerin 2##AK304727|MMRN2|79812|multimerin 2##AK023527|MMRN2|79812|multimerin 2##AK293822|MMRN2|79812|multimerin 2##BC094744|MMRN2|79812|multimerin 2##BC064415|MMRN2|79812|multimerin 2##AK308401|MMRN2|79812|multimerin 2##NM_024756|MMRN2|79812|multimerin 2##NM_003087|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK223367|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##BC014098|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK312141|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF017256|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF411524|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU019993|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF010126|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892334|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892505|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ895719|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU176715|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541788|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541790|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##NM_006829|C10orf116|10974|chromosome 10 open reading frame 116##AK312031|C10orf116|10974|chromosome 10 open reading frame 116##BC004471|C10orf116|10974|chromosome 10 open reading frame 116##D45370|C10orf116|10974|chromosome 10 open reading frame 116	1.992479	0.741672	denovo_WM_7:-47:0.433	denovo_WM_7:-48:0.289	denovo_WM_7:-63:0.320	denovo_WM_7:-64:0.465	CTCF.p2:64:0.742
chr5	10250042	10250213	reg1000065.p3	18.362	+	AK300042 TSC_hg19_v1_chr5_-_10250001 AK316317 AK055604 AK302012 NM_199133	-122	-	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	-143	-	BC095521 NM_019599	-619665	-	NM_012073 AK302368 TSC_hg19_v1_chr5_+_10250368	198	+	BC035499 TSC_hg19_v1_chr5_+_10250370	246	+	TSC_hg19_v1_chr5_+_10250399 AK290393 AK301985 BC040027	262	+	AK300042|FAM173B|134145|family with sequence similarity 173, member B##AK316317|FAM173B|134145|family with sequence similarity 173, member B##AK055604|FAM173B|134145|family with sequence similarity 173, member B##AK302012|FAM173B|134145|family with sequence similarity 173, member B##NM_199133|FAM173B|134145|family with sequence similarity 173, member B##BC063406|FAM173B|134145|family with sequence similarity 173, member B##BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##NM_012073|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK302368|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##BC035499|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK290393|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK301985|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##BC040027|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)	1.404732	0.0	denovo_WM_7:-87:0.217
chr19	1344799	1344971	reg1000073.p2	18.359	+	TSC_hg19_v1_chr19_+_1286081 AJ007292 NM_001405 AB463609	-58920	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	-69318	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	-73936	+	TSC_hg19_v1_chr19_+_1354979 NM_032853 AK310721 U20897	10116	+	TSC_hg19_v1_chr19_+_1383882 AK092169 AX747389 NM_024407 AK128713	39001	+	AK293917 AK297611 TSC_hg19_v1_chr19_+_1383902 AF115969 AK091623 AK127759 AX747100	39015	+	AJ007292|EFNA2|1943|ephrin-A2##NM_001405|EFNA2|1943|ephrin-A2##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_032853|MUM1|84939|melanoma associated antigen (mutated) 1##AK310721|MUM1|84939|melanoma associated antigen (mutated) 1##U20897|MUM1|84939|melanoma associated antigen (mutated) 1##AK092169|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##NM_024407|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK128713|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK293917|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AF115969|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK091623|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK127759|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)	0.99848	0.0	
chr5	150508429	150508577	reg1000098.p1	18.337	+	AK290999 NM_001252390	-41283	-	BC014008 AB252970 AB252971 AB252974 AB252982 AJ011895 AJ011896 AK298685 NM_001252391 NM_001252392	-41782	-	TSC_hg19_v1_chr5_-_150460599 AB252972 AB252973 AB252975 NM_001252385 NM_001252386 NM_001252393 NM_006058 AY012155	-47880	-	AK303078 NM_001193544	12704	-	J03578 BC017046 TSC_hg19_v1_chr5_-_150537299	28778	-	TSC_hg19_v1_chr5_-_150537327 AK126836 AK290672 AK130077 Y00097 AK298582	28816	-	AK290999|TNIP1|10318|TNFAIP3 interacting protein 1##NM_001252390|TNIP1|10318|TNFAIP3 interacting protein 1##BC014008|TNIP1|10318|TNFAIP3 interacting protein 1##AB252970|TNIP1|10318|TNFAIP3 interacting protein 1##AB252971|TNIP1|10318|TNFAIP3 interacting protein 1##AB252982|TNIP1|10318|TNFAIP3 interacting protein 1##AJ011895|TNIP1|10318|TNFAIP3 interacting protein 1##AJ011896|TNIP1|10318|TNFAIP3 interacting protein 1##AK298685|TNIP1|10318|TNFAIP3 interacting protein 1##NM_001252391|TNIP1|10318|TNFAIP3 interacting protein 1##NM_001252392|TNIP1|10318|TNFAIP3 interacting protein 1##AB252972|TNIP1|10318|TNFAIP3 interacting protein 1##AB252973|TNIP1|10318|TNFAIP3 interacting protein 1##AB252975|TNIP1|10318|TNFAIP3 interacting protein 1##NM_001252385|TNIP1|10318|TNFAIP3 interacting protein 1##NM_001252386|TNIP1|10318|TNFAIP3 interacting protein 1##NM_001252393|TNIP1|10318|TNFAIP3 interacting protein 1##NM_006058|TNIP1|10318|TNFAIP3 interacting protein 1##AY012155|TNIP1|10318|TNFAIP3 interacting protein 1##AK303078|ANXA6|309|annexin A6##NM_001193544|ANXA6|309|annexin A6##J03578|ANXA6|309|annexin A6##BC017046|ANXA6|309|annexin A6##AK126836|ANXA6|309|annexin A6##AK290672|ANXA6|309|annexin A6##AK130077|ANXA6|309|annexin A6##Y00097|ANXA6|309|annexin A6##AK298582|ANXA6|309|annexin A6	0.997125	0.0	denovo_WM_7:12:0.313	denovo_WM_7:13:0.313	denovo_WM_7:14:0.313
chr4	174291838	174291976	reg1000094.p3	18.297	+	BC001063 BC100019 BC021054 TSC_hg19_v1_chr4_-_174255505 BC000903 AK311864 NM_001130688 NM_002129	-36378	-	Z17240 BT019782 BT019783 AB463732 DQ892288 DQ895487 NM_001130689 TSC_hg19_v1_chr4_-_174255014	-37032	-	BC040577 TSC_hg19_v1_chr4_-_174090813	-201100	-	TSC_hg19_v1_chr4_+_174292088 NM_003864 AF055993	156	+	TSC_hg19_v1_chr4_+_174292104 BC016757	201	+	AJ224677 NM_007281	28709	-	BC001063|HMGB2|3148|high mobility group box 2##BC100019|HMGB2|3148|high mobility group box 2##BC000903|HMGB2|3148|high mobility group box 2##AK311864|HMGB2|3148|high mobility group box 2##NM_001130688|HMGB2|3148|high mobility group box 2##NM_002129|HMGB2|3148|high mobility group box 2##Z17240|HMGB2|3148|high mobility group box 2##BT019782|HMGB2|3148|high mobility group box 2##BT019783|HMGB2|3148|high mobility group box 2##DQ892288|HMGB2|3148|high mobility group box 2##DQ895487|HMGB2|3148|high mobility group box 2##NM_001130689|HMGB2|3148|high mobility group box 2##NM_003864|SAP30|8819|Sin3A-associated protein, 30kDa##AF055993|SAP30|8819|Sin3A-associated protein, 30kDa##BC016757|SAP30|8819|Sin3A-associated protein, 30kDa##AJ224677|SCRG1|11341|stimulator of chondrogenesis 1##NM_007281|SCRG1|11341|stimulator of chondrogenesis 1	0.990809	0.0	
chr6	16317039	16317161	reg1000104.p1	18.224	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-78249	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-173790	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-187663	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	444597	-	NM_001190766	785388	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	964754	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	2.917683	0.440927	denovo_WM_7:2:0.846	denovo_WM_7:17:0.851	CTCF.p2:-27:0.441	denovo_WM_7:-99:0.955
chrX	115074642	115074746	reg1000039.p1	18.187	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-246826	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-277652	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-279088	+	BC003645 TSC_hg19_v1_chrX_-_115085443	10745	-	AK313927 NM_000686 X87723 U16957	227301	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	493073	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.110321	
chr7	129650819	129650998	reg1000118.p2	18.185	+	TSC_hg19_v1_chr7_-_129592801 NM_003344 NM_182697	-58099	-	BC006277 TSC_hg19_v1_chr7_-_129592785 NM_001202498	-58157	-	L22454 NM_001040110	-380991	+	TSC_hg19_v1_chr7_-_129691215 BC000190 AB463378 AJ537494 AM393415 CU679956 BC011551 AF151050 AK001317 AK022373 NM_016478	40313	-	TSC_hg19_v1_chr7_+_129710381 BC044884 NM_014997 BC036464	59452	+	TSC_hg19_v1_chr7_+_129710402 D87454	59525	+	NM_003344|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_182697|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC006277|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_001202498|UBE2H|7328|ubiquitin-conjugating enzyme E2H##L22454|NRF1|4899|nuclear respiratory factor 1##NM_001040110|NRF1|4899|nuclear respiratory factor 1##BC000190|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AJ537494|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AM393415|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC011551|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AF151050|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK001317|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK022373|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_016478|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC044884|KLHDC10|23008|kelch domain containing 10##NM_014997|KLHDC10|23008|kelch domain containing 10##BC036464|KLHDC10|23008|kelch domain containing 10##D87454|KLHDC10|23008|kelch domain containing 10	1.988538	0.05438	denovo_WM_7:29:0.644	denovo_WM_7:30:0.289	denovo_WM_7:44:0.593	denovo_WM_7:45:0.272
chr17	59940914	59941085	reg1000106.p1	18.138	+	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-205	-	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	-272437	-	AF188703 NM_018488 BC136403 BC144062 AB464284	-407171	+	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	64343	-	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	201628	-	NM_001144933	506579	+	BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##AF188703|TBX4|9496|T-box 4##NM_018488|TBX4|9496|T-box 4##BC136403|TBX4|9496|T-box 4##BC144062|TBX4|9496|T-box 4##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3	0.983864	0.0	denovo_WM_7:25:0.320	denovo_WM_7:26:0.320	denovo_WM_7:27:0.320
chr12	57151398	57151524	reg1000132.p1	18.128	+	AB528338 CU675073 EU176421 EU176762 TSC_hg19_v1_chr12_-_57146108 AK223391 AK314866 X74330 BC005266 NM_000946	-5335	-	TSC_hg19_v1_chr12_-_57119316 NM_001113202 NM_001113203	-32143	-	BC105120 BC105122 TSC_hg19_v1_chr12_-_57119084 BC106041 AF054187 AY605660 AY911673 X80909 AK311904 AK096699 AK223085 AK293209	-32419	-	AK313423 BC020710 NM_003725 TSC_hg19_v1_chr12_+_57157107 U89281 AF223225	5650	+	AY044434 BC101551 BC101553 AK122782 NM_148897	176655	-	AF057034 NM_003708	199938	-	EU176421|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##EU176762|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##AK223391|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##AK314866|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##X74330|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##BC005266|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##NM_000946|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##NM_001113202|NACA|4666|nascent polypeptide-associated complex alpha subunit##NM_001113203|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105120|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105122|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC106041|NACA|4666|nascent polypeptide-associated complex alpha subunit##AF054187|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY605660|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY911673|NACA|4666|nascent polypeptide-associated complex alpha subunit##X80909|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK311904|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK096699|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK223085|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK293209|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK313423|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##BC020710|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##NM_003725|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##U89281|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##AF223225|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##AY044434|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##BC101551|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##BC101553|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##AK122782|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##NM_148897|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##AF057034|RDH16|8608|retinol dehydrogenase 16 (all-trans)##NM_003708|RDH16|8608|retinol dehydrogenase 16 (all-trans)	0.99967	0.076582	
chr19	17685043	17685183	reg1000150.p1	18.115	+	TSC_hg19_v1_chr19_+_17666507 AK075541 NM_024656	-18602	+	TSC_hg19_v1_chr19_+_17666457 BC108308	-18650	+	TSC_hg19_v1_chr19_+_17666429 AK074941	-18705	+	AB028955 NM_001080421 AB587313 TSC_hg19_v1_chr19_-_17799158	113985	-	TSC_hg19_v1_chr19_+_17830288 AK292555	145177	+	DQ387861 NM_018174 AL834233 BC067115 TSC_hg19_v1_chr19_+_17830310 BC080547 AJ440784 AK027623 BC113952 AK308975	145196	+	AK075541|GLT25D1|79709|glycosyltransferase 25 domain containing 1##NM_024656|GLT25D1|79709|glycosyltransferase 25 domain containing 1##BC108308|GLT25D1|79709|glycosyltransferase 25 domain containing 1##AK074941|GLT25D1|79709|glycosyltransferase 25 domain containing 1##AB028955|UNC13A|23025|unc-13 homolog A (C. elegans)##NM_001080421|UNC13A|23025|unc-13 homolog A (C. elegans)##AK292555|MAP1S|55201|microtubule-associated protein 1S##DQ387861|MAP1S|55201|microtubule-associated protein 1S##NM_018174|MAP1S|55201|microtubule-associated protein 1S##AL834233|MAP1S|55201|microtubule-associated protein 1S##BC067115|MAP1S|55201|microtubule-associated protein 1S##BC080547|MAP1S|55201|microtubule-associated protein 1S##AJ440784|MAP1S|55201|microtubule-associated protein 1S##AK027623|MAP1S|55201|microtubule-associated protein 1S##BC113952|MAP1S|55201|microtubule-associated protein 1S##AK308975|MAP1S|55201|microtubule-associated protein 1S	0.996942	0.939022	CTCF.p2:-19:0.939	denovo_WM_7:36:0.841
chrX	130896839	130896960	reg1000071.p1	18.049	+	BC137050 AB529233 NM_001004486	-218901	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-473487	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-473637	-	TSC_hg19_v1_chrX_-_130964633 AK097911	67752	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	260422	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	260741	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.021805	
chr5	169233143	169233284	reg1000115.p4	18.036	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-168913	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-168969	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-222492	+	AK055998 NM_001129891	174530	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	299758	+	BC030767 NM_001102609 BC092511	426783	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.99693	0.0	
chr6	39948962	39949106	reg1000109.p1	17.995	+	TSC_hg19_v1_chr6_-_39902202 AK300300 AF034374 AK091306 AK056740 NM_001075098	-46820	-	AB527188 AJ224328 NM_005943	-53649	-	NM_015345 AL833083 BC128388	-188216	+	BC142616 AB033072 NM_020737 AK291474	606110	-	BC035284 NM_173561 TSC_hg19_v1_chr6_-_41006954	1057915	-	NM_001010873 BC104440 BC104441 BC137560 BC137565 BC144710 NM_001159726	1061312	+	AK300300|MOCS1|4337|molybdenum cofactor synthesis 1##AF034374|MOCS1|4337|molybdenum cofactor synthesis 1##AK091306|MOCS1|4337|molybdenum cofactor synthesis 1##AK056740|MOCS1|4337|molybdenum cofactor synthesis 1##NM_001075098|MOCS1|4337|molybdenum cofactor synthesis 1##AJ224328|MOCS1|4337|molybdenum cofactor synthesis 1##NM_005943|MOCS1|4337|molybdenum cofactor synthesis 1##NM_015345|DAAM2|23500|dishevelled associated activator of morphogenesis 2##AL833083|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC128388|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC142616|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AB033072|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##NM_020737|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK291474|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##BC035284|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_173561|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_001010873|TSPO2|222642|translocator protein 2##BC104440|TSPO2|222642|translocator protein 2##BC104441|TSPO2|222642|translocator protein 2##BC137560|TSPO2|222642|translocator protein 2##BC137565|TSPO2|222642|translocator protein 2##BC144710|TSPO2|222642|translocator protein 2##NM_001159726|TSPO2|222642|translocator protein 2	1.07267	0.881563	CTCF.p2:-35:0.882
chr12	117295924	117296040	reg1000113.p1	17.909	+	TSC_hg19_v1_chr12_+_117176119 NM_001109903 NM_032814 BC011878 AK027533	-119863	+	TSC_hg19_v1_chr12_-_117175868 AK222983 AK298857	-120113	-	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	-120244	-	NM_003806 U76376	23249	-	TSC_hg19_v1_chr12_+_117348781 BC037296 NM_012174 NM_153348 AK289621 AF176707 BC075823	52804	+	DQ894644 TSC_hg19_v1_chr12_-_117537222 AF443207 BC015221 NM_001168325 NM_017899 AK000614	241281	-	NM_001109903|RNFT2|84900|ring finger protein, transmembrane 2##NM_032814|RNFT2|84900|ring finger protein, transmembrane 2##BC011878|RNFT2|84900|ring finger protein, transmembrane 2##AK027533|RNFT2|84900|ring finger protein, transmembrane 2##AK222983|C12orf49|79794|chromosome 12 open reading frame 49##AK298857|C12orf49|79794|chromosome 12 open reading frame 49##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49##NM_003806|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##U76376|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##BC037296|FBXW8|26259|F-box and WD repeat domain containing 8##NM_012174|FBXW8|26259|F-box and WD repeat domain containing 8##NM_153348|FBXW8|26259|F-box and WD repeat domain containing 8##AK289621|FBXW8|26259|F-box and WD repeat domain containing 8##AF176707|FBXW8|26259|F-box and WD repeat domain containing 8##DQ894644|TESC|54997|tescalcin##AF443207|TESC|54997|tescalcin##BC015221|TESC|54997|tescalcin##NM_001168325|TESC|54997|tescalcin##NM_017899|TESC|54997|tescalcin##AK000614|TESC|54997|tescalcin	1.932977	0.0	denovo_WM_7:21:0.747	denovo_WM_7:-48:0.238	denovo_WM_7:-49:0.238	denovo_WM_7:-50:0.238	denovo_WM_7:-51:0.243
chr1	32986163	32986291	reg1000110.p1	17.902	+	TSC_hg19_v1_chr1_+_32930659 AK092326 AX747483 NM_001145720	-55575	+	CR457252 TSC_hg19_v1_chr1_-_32860030 BC010573 CR749228 BX641056 AK300231 BC026322 AK297604 AK300306 AK001138 AK225717 AK293454 BC028381 AK021440 AK297352 AK225026 AK304477 AK316172 NM_001143888 NM_001143889 NM_001143890 NM_018045	-126190	-	NM_001167676	-158384	-	NM_001040441	18544	+	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	18817	+	AY099494 TSC_hg19_v1_chr1_-_33116147 BC058843 AY158005 AY099493 AY151084 AY151085 NM_178547	129910	-	NM_001145720|ZBTB8B|728116|zinc finger and BTB domain containing 8B##CR457252|BSDC1|55108|BSD domain containing 1##BC010573|BSDC1|55108|BSD domain containing 1##CR749228|BSDC1|55108|BSD domain containing 1##BX641056|BSDC1|55108|BSD domain containing 1##AK300231|BSDC1|55108|BSD domain containing 1##BC026322|BSDC1|55108|BSD domain containing 1##AK297604|BSDC1|55108|BSD domain containing 1##AK300306|BSDC1|55108|BSD domain containing 1##AK001138|BSDC1|55108|BSD domain containing 1##AK225717|BSDC1|55108|BSD domain containing 1##AK293454|BSDC1|55108|BSD domain containing 1##BC028381|BSDC1|55108|BSD domain containing 1##AK021440|BSDC1|55108|BSD domain containing 1##AK297352|BSDC1|55108|BSD domain containing 1##AK225026|BSDC1|55108|BSD domain containing 1##AK304477|BSDC1|55108|BSD domain containing 1##AK316172|BSDC1|55108|BSD domain containing 1##NM_001143888|BSDC1|55108|BSD domain containing 1##NM_001143889|BSDC1|55108|BSD domain containing 1##NM_001143890|BSDC1|55108|BSD domain containing 1##NM_018045|BSDC1|55108|BSD domain containing 1##NM_001167676|LOC100128071|100128071|uncharacterized LOC100128071##NM_001040441|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY099494|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##BC058843|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY158005|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY099493|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151084|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151085|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_178547|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand	0.996867	0.217547	CTCF.p2:-22:0.218
chr4	75055126	75055262	reg1000133.p1	17.841	+	TSC_hg19_v1_chr4_+_75023834 AX794782 BC037529 NM_001144978 BC041943 AX794779	-31329	+	NM_002089 TSC_hg19_v1_chr4_-_74965027	-90172	-	CR542171 CU677427 AB590957 X53799 M57731 BC015753 BC053653 TSC_hg19_v1_chr4_-_74964913 AK308504 M36820 AK311304 BC005276	-90319	-	AK289455 BC127938 BC127939 DQ235269 AY358920 NM_001013442 DQ235264 DQ235265 DQ235266 DQ235267 DQ235268	119025	+	TSC_hg19_v1_chr4_+_75230861 AK314959 D30783 NM_001432 BC035806 BC136404 BC136405 CR541887	175746	+	BC009799 M30704 NM_001657	255658	+	BC037529|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##NM_001144978|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##BC041943|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##NM_002089|CXCL2|2920|chemokine (C-X-C motif) ligand 2##CR542171|CXCL2|2920|chemokine (C-X-C motif) ligand 2##X53799|CXCL2|2920|chemokine (C-X-C motif) ligand 2##M57731|CXCL2|2920|chemokine (C-X-C motif) ligand 2##BC015753|CXCL2|2920|chemokine (C-X-C motif) ligand 2##BC053653|CXCL2|2920|chemokine (C-X-C motif) ligand 2##M36820|CXCL2|2920|chemokine (C-X-C motif) ligand 2##AK289455|EPGN|255324|epithelial mitogen homolog (mouse)##BC127938|EPGN|255324|epithelial mitogen homolog (mouse)##BC127939|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235269|EPGN|255324|epithelial mitogen homolog (mouse)##AY358920|EPGN|255324|epithelial mitogen homolog (mouse)##NM_001013442|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235264|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235265|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235266|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235267|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235268|EPGN|255324|epithelial mitogen homolog (mouse)##AK314959|EREG|2069|epiregulin##D30783|EREG|2069|epiregulin##NM_001432|EREG|2069|epiregulin##BC035806|EREG|2069|epiregulin##BC136404|EREG|2069|epiregulin##BC136405|EREG|2069|epiregulin##CR541887|EREG|2069|epiregulin##BC009799|AREG|374|amphiregulin##M30704|AREG|374|amphiregulin##NM_001657|AREG|374|amphiregulin	1.176223	0.796108	CTCF.p2:-25:0.796
chr3	47018449	47018562	reg1000117.p2	17.829	+	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	-260	-	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-94763	+	BC112221 BC112247 NM_000316 U17418 X68596	-99256	+	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	2742	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	10965	+	TSC_hg19_v1_chr3_-_47098906 AK026837	80438	-	AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2##AK026837|SETD2|29072|SET domain containing 2	0.998252	0.0	denovo_WM_7:-40:0.414	denovo_WM_7:-48:0.311
chr11	7716017	7716145	reg1000143.p1	17.816	+	AB209000 BC001346 AF169802 NM_016229	-21329	-	AK296718 TSC_hg19_v1_chr11_+_7618421	-97663	+	TSC_hg19_v1_chr11_+_7535229 AK001131 AK308398	-180838	+	NM_198185	11859	-	AF173006 NM_153444 HQ258379 BC101710 BC113557	102422	-	AB463971 AF158377 NM_153445	131437	-	AB209000|CYB5R2|51700|cytochrome b5 reductase 2##BC001346|CYB5R2|51700|cytochrome b5 reductase 2##AF169802|CYB5R2|51700|cytochrome b5 reductase 2##NM_016229|CYB5R2|51700|cytochrome b5 reductase 2##AK296718|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##AK001131|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##AK308398|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##NM_198185|OVCH2|341277|ovochymase 2 (gene/pseudogene)##AF173006|OR5P2|120065|olfactory receptor, family 5, subfamily P, member 2##NM_153444|OR5P2|120065|olfactory receptor, family 5, subfamily P, member 2##HQ258379|OR5P2|120065|olfactory receptor, family 5, subfamily P, member 2##BC101710|OR5P2|120065|olfactory receptor, family 5, subfamily P, member 2##BC113557|OR5P2|120065|olfactory receptor, family 5, subfamily P, member 2##AF158377|OR5P3|120066|olfactory receptor, family 5, subfamily P, member 3##NM_153445|OR5P3|120066|olfactory receptor, family 5, subfamily P, member 3	0.999879	0.996477	CTCF.p2:0:0.996
chr12	34175099	34175245	reg1000100.p1	17.807	+	BC101024 BC101025 TSC_hg19_v1_chr12_-_33592705 AY198413 NM_198992	-582506	-	EU520483 EU520484 EU520485 EU520486 AB590796 HQ258660 TSC_hg19_v1_chr12_-_33049733 X97675 BC094762 BC126199 BC143966 BC143967 BC070083 NM_001005242 NM_004572	-1125437	-	AF132939 CU677373 DQ893063 DQ896315 BC015625 TSC_hg19_v1_chr12_-_32908835 AK024057 AK026619 AK130935 NM_001040436	-1266331	-	AJ312278 NM_032834	43	+	TSC_hg19_v1_chr12_+_34175402 BC022336	214	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	301	+	BC101024|SYT10|341359|synaptotagmin X##BC101025|SYT10|341359|synaptotagmin X##AY198413|SYT10|341359|synaptotagmin X##NM_198992|SYT10|341359|synaptotagmin X##EU520483|PKP2|5318|plakophilin 2##EU520484|PKP2|5318|plakophilin 2##EU520485|PKP2|5318|plakophilin 2##EU520486|PKP2|5318|plakophilin 2##HQ258660|PKP2|5318|plakophilin 2##X97675|PKP2|5318|plakophilin 2##BC094762|PKP2|5318|plakophilin 2##BC126199|PKP2|5318|plakophilin 2##BC143966|PKP2|5318|plakophilin 2##BC143967|PKP2|5318|plakophilin 2##BC070083|PKP2|5318|plakophilin 2##NM_001005242|PKP2|5318|plakophilin 2##NM_004572|PKP2|5318|plakophilin 2##AF132939|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##DQ893063|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##DQ896315|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##BC015625|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK024057|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK026619|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK130935|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##NM_001040436|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)	1.991391	0.912441	denovo_WM_7:20:0.238	denovo_WM_7:21:0.672	denovo_WM_7:36:0.723	CTCF.p2:-38:0.912
chr4	99850348	99850528	reg1000127.p2	17.787	+	M15353 TSC_hg19_v1_chr4_-_99850288	-147	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	-178	-	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	-270679	-	NM_001130679 NM_001968 BC035166	1348	-	NM_015143 TSC_hg19_v1_chr4_+_99916843	66377	+	TSC_hg19_v1_chr4_+_99916871 AK304239	66421	+	M15353|EIF4E|1977|eukaryotic translation initiation factor 4E##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E##BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_015143|METAP1|23173|methionyl aminopeptidase 1##AK304239|METAP1|23173|methionyl aminopeptidase 1	0.998892	0.0	
chr12	923484	923594	reg1000116.p1	17.763	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-60783	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	-61383	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-150824	-	BC013629 TSC_hg19_v1_chr12_+_1017145	93543	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	135287	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	176913	+	AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1	0.997637	0.398163	CTCF.p2:6:0.398	denovo_WM_7:-43:0.817
chr16	31884931	31885108	reg1000128.p2	17.756	+	TSC_hg19_v1_chr16_+_31724584 AK299345 AK128671 BC018134 AX721120	-160418	+	TSC_hg19_v1_chr16_+_31724564 AL832197	-160454	+	TSC_hg19_v1_chr16_+_31724557 NM_001130913 BC055408	-160473	+	TSC_hg19_v1_chr16_+_31885098 NM_003414	68	+	TSC_hg19_v1_chr16_+_31885114 AK096390	97	+	AF220492 TSC_hg19_v1_chr16_+_31885131	113	+	AK128671|ZNF720|124411|zinc finger protein 720##BC018134|ZNF720|124411|zinc finger protein 720##AL832197|ZNF720|124411|zinc finger protein 720##NM_001130913|ZNF720|124411|zinc finger protein 720##BC055408|ZNF720|124411|zinc finger protein 720##NM_003414|ZNF267|10308|zinc finger protein 267##AK096390|ZNF267|10308|zinc finger protein 267##AF220492|ZNF267|10308|zinc finger protein 267	0.99773	0.0	denovo_WM_7:-32:0.238	denovo_WM_7:-33:0.238	denovo_WM_7:-34:0.238	denovo_WM_7:-35:0.238
chr9	139965039	139965190	reg1000112.p1	17.749	+	TSC_hg19_v1_chr9_-_139965024 BC048267 NM_178448 DQ150361	-81	-	AF144748 EF495152 CU690182 DQ892410 DQ895623 U91510 BC035738 NM_001246 NM_203468	-16639	-	TSC_hg19_v1_chr9_-_139940630 AF327349 AK074793 AF285836 NM_015392	-24475	-	TSC_hg19_v1_chr9_+_139971968 NM_207309	6839	+	AL832421 TSC_hg19_v1_chr9_+_139972236 AK095393 BC106035	7126	+	BC032375 TSC_hg19_v1_chr9_-_139981113 BC020858	16025	-	BC048267|C9orf140|89958|chromosome 9 open reading frame 140##NM_178448|C9orf140|89958|chromosome 9 open reading frame 140##DQ150361|C9orf140|89958|chromosome 9 open reading frame 140##AF144748|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##EF495152|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ892410|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ895623|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##U91510|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##BC035738|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_001246|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_203468|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##AF327349|NPDC1|56654|neural proliferation, differentiation and control, 1##AK074793|NPDC1|56654|neural proliferation, differentiation and control, 1##AF285836|NPDC1|56654|neural proliferation, differentiation and control, 1##NM_015392|NPDC1|56654|neural proliferation, differentiation and control, 1##NM_207309|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AL832421|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AK095393|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC106035|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC032375|LOC100289341|100289341|uncharacterized LOC100289341##BC020858|LOC100289341|100289341|uncharacterized LOC100289341	0.991275	0.0	denovo_WM_7:13:0.458	denovo_WM_7:14:0.458
chr12	51318262	51318384	reg1000074.p2	17.746	+	NM_182559 BC035123 BC048112 CU690554	-81600	+	TSC_hg19_v1_chr12_+_51158275 AK299240	-160065	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	-160445	+	TSC_hg19_v1_chr12_+_51318519 NM_014033	201	+	TSC_hg19_v1_chr12_+_51318801 AY358797 AK024409 AK307071 AK225689 AK225595 AK023693 AK293356 AJ536233 BC008180 BC004492 AB590800 EU832657 EU832734 AL050159 AF113007	478	+	NM_001109619	29458	+	NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##AK299240|ATF1|466|activating transcription factor 1##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##NM_014033|METTL7A|25840|methyltransferase like 7A##AY358797|METTL7A|25840|methyltransferase like 7A##AK024409|METTL7A|25840|methyltransferase like 7A##AK307071|METTL7A|25840|methyltransferase like 7A##AK225689|METTL7A|25840|methyltransferase like 7A##AK225595|METTL7A|25840|methyltransferase like 7A##AK023693|METTL7A|25840|methyltransferase like 7A##AK293356|METTL7A|25840|methyltransferase like 7A##AJ536233|METTL7A|25840|methyltransferase like 7A##BC008180|METTL7A|25840|methyltransferase like 7A##BC004492|METTL7A|25840|methyltransferase like 7A##EU832657|METTL7A|25840|methyltransferase like 7A##EU832734|METTL7A|25840|methyltransferase like 7A##AL050159|METTL7A|25840|methyltransferase like 7A##AF113007|METTL7A|25840|methyltransferase like 7A##NM_001109619|HIGD1C|613227|HIG1 hypoxia inducible domain family, member 1C	2.011136	0.0	denovo_WM_7:-16:0.778
chr19	1194671	1194851	reg1000126.p2	17.737	+	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	-20482	-	TSC_hg19_v1_chr19_-_1174260 AB023180	-20502	-	TSC_hg19_v1_chr19_-_1174256 BC052799	-20533	-	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	11045	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	11930	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	12412	+	AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2	0.0	0.95517	CTCF.p2:-83:0.955
chrX	56829350	56829483	reg1000131.p1	17.728	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-73725	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-239365	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-570506	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	192555	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	318512	-	BC071694 NM_019003	334641	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.798549	0.0	denovo_WM_7:-44:0.251
chr8	72740225	72740387	reg1000119.p4	17.703	+	BC035138 BC048982 TSC_hg19_v1_chr8_-_72459928	-280397	-	AJ000098 NM_000503 TSC_hg19_v1_chr8_-_72274481	-465831	-	TSC_hg19_v1_chr8_-_72274302 AK307379	-466013	-	TSC_hg19_v1_chr8_+_72756330 AK123315 BC094782	15968	+	TSC_hg19_v1_chr8_+_72756336 BX647470	16034	+	TSC_hg19_v1_chr8_-_72756449 AF087036 AB463900 BT007169	16133	-	AJ000098|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_000503|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK307379|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK123315|LOC100132891|100132891|uncharacterized LOC100132891##AF087036|MSC|9242|musculin##BT007169|MSC|9242|musculin	2.020845	0.793827	CTCF.p2:16:0.794
chr2	102268294	102268474	reg1000136.p1	17.664	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-177191	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-264395	-	TSC_hg19_v1_chr2_-_102003859 AK094970	-264521	-	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	45968	+	TSC_hg19_v1_chr2_+_102508334 BC045694	239958	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	240148	+	AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AK094970|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4	1.991349	0.0	denovo_WM_7:-22:0.250	denovo_WM_7:-23:0.674	denovo_WM_7:-38:0.821
chr6	87776274	87776415	reg1000167.p1	17.608	+	NM_000865	-129321	+	BC009220 BC108291 AK311192 TSC_hg19_v1_chr6_-_86388452	-1387907	-	TSC_hg19_v1_chr6_-_86353055 AF037448 NM_001159677 NM_006372	-1423319	-	V00518 AK023644 AK311972 BC055080 BC010957 BC020782 NM_000735 NM_001252383	28474	-	TSC_hg19_v1_chr6_+_87865282 NM_015021 AK123473 BX537746 CR936740	88945	+	TSC_hg19_v1_chr6_+_87964930 AL832366	188636	+	NM_000865|HTR1E|3354|5-hydroxytryptamine (serotonin) receptor 1E##BC009220|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##BC108291|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##AF037448|SYNCRIP|10492|synaptotagmin binding, cytoplasmic RNA interacting protein##NM_001159677|SYNCRIP|10492|synaptotagmin binding, cytoplasmic RNA interacting protein##NM_006372|SYNCRIP|10492|synaptotagmin binding, cytoplasmic RNA interacting protein##V00518|CGA|1081|glycoprotein hormones, alpha polypeptide##AK311972|CGA|1081|glycoprotein hormones, alpha polypeptide##BC055080|CGA|1081|glycoprotein hormones, alpha polypeptide##BC010957|CGA|1081|glycoprotein hormones, alpha polypeptide##BC020782|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000735|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_001252383|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_015021|ZNF292|23036|zinc finger protein 292##AK123473|ZNF292|23036|zinc finger protein 292##BX537746|ZNF292|23036|zinc finger protein 292##AL832366|ZNF292|23036|zinc finger protein 292	1.189269	0.404343	CTCF.p2:-6:0.404	denovo_WM_7:-40:0.295	denovo_WM_7:-41:0.295	denovo_WM_7:-42:0.295
chr12	50419377	50419527	reg1000161.p1	17.603	+	BC024144 AB030251 TSC_hg19_v1_chr12_-_50419242 AK000733 AL136794 BC032754 AK315785 NM_001126103 NM_001126104 NM_013277	-219	-	NM_001652 U48408	-52833	+	NM_001651	-64174	+	NM_001095 NM_020039 U78180 U78181 BC028722 AK290010	32109	+	TSC_hg19_v1_chr12_+_50479018 NM_003076 NM_139071 U66617 BC009368	59535	+	TSC_hg19_v1_chr12_+_50479124 AK292700 AK293932 AK130517 AB527887 CU679327 EU447009 BC000063 AF109733	59661	+	BC024144|RACGAP1|29127|Rac GTPase activating protein 1##AB030251|RACGAP1|29127|Rac GTPase activating protein 1##AK000733|RACGAP1|29127|Rac GTPase activating protein 1##AL136794|RACGAP1|29127|Rac GTPase activating protein 1##BC032754|RACGAP1|29127|Rac GTPase activating protein 1##AK315785|RACGAP1|29127|Rac GTPase activating protein 1##NM_001126103|RACGAP1|29127|Rac GTPase activating protein 1##NM_001126104|RACGAP1|29127|Rac GTPase activating protein 1##NM_013277|RACGAP1|29127|Rac GTPase activating protein 1##NM_001652|AQP6|363|aquaporin 6, kidney specific##U48408|AQP6|363|aquaporin 6, kidney specific##NM_001651|AQP5|362|aquaporin 5##NM_001095|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##NM_020039|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##U78180|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##U78181|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##BC028722|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##AK290010|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##NM_003076|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_139071|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##U66617|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC009368|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK292700|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK293932|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130517|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##EU447009|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC000063|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AF109733|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	0.997688	0.0	denovo_WM_7:2:0.699
chr17	5100414	5100537	reg1000114.p1	17.579	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-5095	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-5302	-	AY143550 NM_004505 X63546 X63547	-68789	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	37626	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	85191	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	222450	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.998184	0.98375	CTCF.p2:-32:0.984
chr19	12833368	12833526	reg1000120.p2	17.577	+	TSC_hg19_v1_chr19_-_12833356 BC063679 BC072420 NM_013433 BC018314 AK299485	-299	-	AY736034 TSC_hg19_v1_chr19_-_12807434 BC004290 AK302744 AK123037 NM_032301	-26023	-	TSC_hg19_v1_chr19_-_12792699 AK300498 NM_001930 NM_013406	-40734	-	NM_001136196 TSC_hg19_v1_chr19_-_12833473	36	-	TSC_hg19_v1_chr19_-_12834747 AF007748 AK056183 NM_001136195	1287	-	TSC_hg19_v1_chr19_-_12845478 CU677275 DQ891449 DQ894628 BC004533	12026	-	BC063679|TNPO2|30000|transportin 2##BC072420|TNPO2|30000|transportin 2##NM_013433|TNPO2|30000|transportin 2##BC018314|TNPO2|30000|transportin 2##AK299485|TNPO2|30000|transportin 2##AY736034|FBXW9|84261|F-box and WD repeat domain containing 9##BC004290|FBXW9|84261|F-box and WD repeat domain containing 9##AK302744|FBXW9|84261|F-box and WD repeat domain containing 9##AK123037|FBXW9|84261|F-box and WD repeat domain containing 9##NM_032301|FBXW9|84261|F-box and WD repeat domain containing 9##AK300498|DHPS|1725|deoxyhypusine synthase##NM_001930|DHPS|1725|deoxyhypusine synthase##NM_013406|DHPS|1725|deoxyhypusine synthase##NM_001136196|TNPO2|30000|transportin 2##AF007748|TNPO2|30000|transportin 2##AK056183|TNPO2|30000|transportin 2##NM_001136195|TNPO2|30000|transportin 2##DQ891449|C19orf43|79002|chromosome 19 open reading frame 43##DQ894628|C19orf43|79002|chromosome 19 open reading frame 43##BC004533|C19orf43|79002|chromosome 19 open reading frame 43	2.856854	0.0	denovo_WM_7:-28:0.399	denovo_WM_7:-33:0.497	denovo_WM_7:-49:0.846	denovo_WM_7:-64:0.853
chr20	3096315	3096431	reg1000148.p1	17.567	+	AF031476 M25647 X03172 BC126196 BC126224 BC018062 NM_000490	-31021	-	X03173 TSC_hg19_v1_chr20_+_3052956	-43476	+	BC069144 NM_000915 BC101841 BC101843 M25650 AB463993 M62611	-44054	+	BC000515 TSC_hg19_v1_chr20_-_3140500 AK222876 AK301748 BC064544 BC011856	44115	-	TSC_hg19_v1_chr20_-_3140509 AK022444 AK023211 BC046122	44141	-	AB020667 TSC_hg19_v1_chr20_-_3140529 AK222570 BC007413 NM_021826 NM_014948 NM_199415	44163	-	AF031476|AVP|551|arginine vasopressin##M25647|AVP|551|arginine vasopressin##X03172|AVP|551|arginine vasopressin##BC126196|AVP|551|arginine vasopressin##BC126224|AVP|551|arginine vasopressin##BC018062|AVP|551|arginine vasopressin##NM_000490|AVP|551|arginine vasopressin##X03173|OXT|5020|oxytocin, prepropeptide##BC069144|OXT|5020|oxytocin, prepropeptide##NM_000915|OXT|5020|oxytocin, prepropeptide##BC101841|OXT|5020|oxytocin, prepropeptide##BC101843|OXT|5020|oxytocin, prepropeptide##M25650|OXT|5020|oxytocin, prepropeptide##M62611|OXT|5020|oxytocin, prepropeptide##BC000515|UBOX5|22888|U-box domain containing 5##AK222876|UBOX5|22888|U-box domain containing 5##AK301748|FASTKD5|60493|FAST kinase domains 5##BC064544|UBOX5|22888|U-box domain containing 5##BC011856|FASTKD5|60493|FAST kinase domains 5##AK022444|UBOX5|22888|U-box domain containing 5##AK023211|FASTKD5|60493|FAST kinase domains 5##BC046122|UBOX5|22888|U-box domain containing 5##AB020667|UBOX5|22888|U-box domain containing 5##AK222570|UBOX5|22888|U-box domain containing 5##BC007413|FASTKD5|60493|FAST kinase domains 5##NM_021826|FASTKD5|60493|FAST kinase domains 5##NM_014948|UBOX5|22888|U-box domain containing 5##NM_199415|UBOX5|22888|U-box domain containing 5	0.998955	0.0	
chr14	93700449	93700563	reg1000129.p1	17.557	+	TSC_hg19_v1_chr14_+_93673628 AB590826 BC051819 BX248249	-26872	+	BC017013 TSC_hg19_v1_chr14_+_93673625	-26882	+	TSC_hg19_v1_chr14_+_93673600 BC015046 AK315492	-26910	+	TSC_hg19_v1_chr14_-_93799368 AB040958 AK001510	98859	-	TSC_hg19_v1_chr14_-_93799376 AK291422 BC141850 BX248762 NM_001002860 NM_018167 BC047071	98898	-	AK125327 NM_020818	99058	+	BC051819|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BX248249|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC017013|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC015046|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AK315492|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AB040958|BTBD7|55727|BTB (POZ) domain containing 7##AK001510|BTBD7|55727|BTB (POZ) domain containing 7##AK291422|BTBD7|55727|BTB (POZ) domain containing 7##BC141850|BTBD7|55727|BTB (POZ) domain containing 7##BX248762|BTBD7|55727|BTB (POZ) domain containing 7##NM_001002860|BTBD7|55727|BTB (POZ) domain containing 7##NM_018167|BTBD7|55727|BTB (POZ) domain containing 7##BC047071|BTBD7|55727|BTB (POZ) domain containing 7##AK125327|UNC79|57578|unc-79 homolog (C. elegans)##NM_020818|UNC79|57578|unc-79 homolog (C. elegans)	0.997236	0.0	
chr14	106144043	106144170	reg1000134.p1	17.556	+	TSC_hg19_v1_chr14_-_106111114 AJ294731	-32990	-	BC040042 TSC_hg19_v1_chr14_-_106110945	-33183	-	TSC_hg19_v1_chr14_-_106092257 AJ294733 L13487	-51770	-	TSC_hg19_v1_chr14_-_106174914 BC113815 AJ294729	30847	-	TSC_hg19_v1_chr14_-_106208542 AF487336	64443	-	AF150959 TSC_hg19_v1_chr14_-_106208714 S76144	64604	-	AJ294731|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##BC040042|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##AJ294733|IGHG4|3503|immunoglobulin heavy constant gamma 4 (G4m marker)##AJ294729|IGHA1|3493|immunoglobulin heavy constant alpha 1	0.998578	0.040266	denovo_WM_7:44:0.494	denovo_WM_7:45:0.494
chr6	20528673	20528819	reg1000170.p1	17.535	+	CR749285 NM_001243076	-124713	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-126643	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	-316074	-	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	5977	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	1065626	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	1137913	+	CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340	0.98891	0.664622	CTCF.p2:7:0.665
chr3	27722779	27722926	reg1000172.p1	17.448	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-196922	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-197027	-	AF047033 AF089726 NM_003615	-224608	-	AB031038 BC131712 NM_005442 AB463608 BC037568	40941	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	41349	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	560246	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	0.989628	0.971902	CTCF.p2:13:0.972
chr6	38670998	38671156	reg1000111.p2	17.445	+	TSC_hg19_v1_chr6_-_38670922 NM_006708	-140	-	AK312662 TSC_hg19_v1_chr6_-_38670921	-157	-	TSC_hg19_v1_chr6_-_38670918 AK293345 D13315	-160	-	AF527621 NM_001206927	12039	+	BC112126 BC113493 NM_002062 TSC_hg19_v1_chr6_+_39016556 U01104 L23503 AB463688 U01156 U01157	345509	+	AF086405 TSC_hg19_v1_chr6_-_39072506	401382	-	NM_006708|GLO1|2739|glyoxalase I##AK312662|GLO1|2739|glyoxalase I##AK293345|GLO1|2739|glyoxalase I##D13315|GLO1|2739|glyoxalase I##AF527621|DNAH8|1769|dynein, axonemal, heavy chain 8##NM_001206927|DNAH8|1769|dynein, axonemal, heavy chain 8##BC112126|GLP1R|2740|glucagon-like peptide 1 receptor##BC113493|GLP1R|2740|glucagon-like peptide 1 receptor##NM_002062|GLP1R|2740|glucagon-like peptide 1 receptor##U01104|GLP1R|2740|glucagon-like peptide 1 receptor##L23503|GLP1R|2740|glucagon-like peptide 1 receptor##U01156|GLP1R|2740|glucagon-like peptide 1 receptor##U01157|GLP1R|2740|glucagon-like peptide 1 receptor##AF086405|C6orf64|55776|chromosome 6 open reading frame 64	0.990936	0.0	denovo_WM_7:24:0.330	denovo_WM_7:25:0.330	denovo_WM_7:26:0.330
chr14	76127390	76127547	reg1000122.p1	17.408	+	AF134159 TSC_hg19_v1_chr14_-_76127220 AK311764 AL136658 AF136971 AF161406 BC002444	-272	-	AK297002 NM_001195283	-55664	+	NM_017791 AY260572 AY260577 BC019087 AK000378	-82503	+	TSC_hg19_v1_chr14_-_76127535 BX248022 NM_007176	87	-	NM_015072 TSC_hg19_v1_chr14_+_76127588 BC110652	101	+	TSC_hg19_v1_chr14_+_76127610 AK309748 AY237126 BC002766	149	+	AF134159|C14orf1|11161|chromosome 14 open reading frame 1##AK311764|C14orf1|11161|chromosome 14 open reading frame 1##AL136658|C14orf1|11161|chromosome 14 open reading frame 1##AF136971|C14orf1|11161|chromosome 14 open reading frame 1##AF161406|C14orf1|11161|chromosome 14 open reading frame 1##BC002444|C14orf1|11161|chromosome 14 open reading frame 1##AK297002|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_001195283|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BX248022|C14orf1|11161|chromosome 14 open reading frame 1##NM_007176|C14orf1|11161|chromosome 14 open reading frame 1##NM_015072|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##BC110652|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##AK309748|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##AY237126|TTLL5|23093|tubulin tyrosine ligase-like family, member 5	0.99749	0.011457	denovo_WM_7:0:0.435	denovo_WM_7:1:0.435
chr22	20772536	20772657	reg1000164.p1	17.405	+	TSC_hg19_v1_chr22_+_20748463 BC056902 X92715 AK291358 AK299569 NM_003426 BC048295 BC013741	-24151	+	NM_015672	-310811	-	BC072398 TSC_hg19_v1_chr22_-_20427830	-344766	-	AB052951 TSC_hg19_v1_chr22_-_20792077	19466	-	TSC_hg19_v1_chr22_-_20792108 AB024433 AF522196 NM_153334 NM_182895	19530	-	AK222850 TSC_hg19_v1_chr22_-_20850077 AK290669 AK294682 AK027266 BC015923 NM_032775	77526	-	BC056902|ZNF74|7625|zinc finger protein 74##X92715|ZNF74|7625|zinc finger protein 74##AK291358|ZNF74|7625|zinc finger protein 74##AK299569|ZNF74|7625|zinc finger protein 74##NM_003426|ZNF74|7625|zinc finger protein 74##BC048295|ZNF74|7625|zinc finger protein 74##BC013741|ZNF74|7625|zinc finger protein 74##NM_015672|RIMBP3|85376|RIMS binding protein 3##BC072398|PI4KAP1|728233|phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1##AB052951|SCARF2|91179|scavenger receptor class F, member 2##AB024433|SCARF2|91179|scavenger receptor class F, member 2##AF522196|SCARF2|91179|scavenger receptor class F, member 2##NM_153334|SCARF2|91179|scavenger receptor class F, member 2##NM_182895|SCARF2|91179|scavenger receptor class F, member 2##AK222850|KLHL22|84861|kelch-like 22 (Drosophila)##AK290669|KLHL22|84861|kelch-like 22 (Drosophila)##AK294682|KLHL22|84861|kelch-like 22 (Drosophila)##AK027266|KLHL22|84861|kelch-like 22 (Drosophila)##BC015923|KLHL22|84861|kelch-like 22 (Drosophila)##NM_032775|KLHL22|84861|kelch-like 22 (Drosophila)	0.996151	0.982516	CTCF.p2:5:0.983
chrX	134099531	134099658	reg1000214.p1	17.390	+	AK316570 AF086333 TSC_hg19_v1_chrX_-_134049288 AK307196 BC005700 AK299074 AL137163 NM_019556	-50322	-	NM_001170782 NM_001170784 BC016784 NM_001170779 NM_001170781 NM_001170783 NM_138819 BC017868 AK090611 AK295485 AK310079 BC063491 BC065225	-158343	+	TSC_hg19_v1_chrX_-_133931236 BC019221 NM_001166599 AK124650 AK297720 NM_001166600 NM_001170757	-168391	-	BC008642 NM_001163438	25373	+	HQ258053 TSC_hg19_v1_chrX_-_134156520 BC063496 BC073159 BC113720 BC117393 BC086860 NM_001078173	56949	-	TSC_hg19_v1_chrX_+_134166384 NM_001078171 Y13374 AF038168 AF052096 BC106076 BC002385 BC002410	66766	+	AK316570|MOSPD1|56180|motile sperm domain containing 1##AF086333|MOSPD1|56180|motile sperm domain containing 1##AK307196|MOSPD1|56180|motile sperm domain containing 1##BC005700|MOSPD1|56180|motile sperm domain containing 1##AK299074|MOSPD1|56180|motile sperm domain containing 1##AL137163|MOSPD1|56180|motile sperm domain containing 1##NM_019556|MOSPD1|56180|motile sperm domain containing 1##NM_001170782|FAM122C|159091|family with sequence similarity 122C##NM_001170784|FAM122C|159091|family with sequence similarity 122C##BC016784|FAM122C|159091|family with sequence similarity 122C##NM_001170779|FAM122C|159091|family with sequence similarity 122C##NM_001170781|FAM122C|159091|family with sequence similarity 122C##NM_001170783|FAM122C|159091|family with sequence similarity 122C##NM_138819|FAM122C|159091|family with sequence similarity 122C##BC017868|FAM122C|159091|family with sequence similarity 122C##AK090611|FAM122C|159091|family with sequence similarity 122C##AK295485|FAM122C|159091|family with sequence similarity 122C##AK310079|FAM122C|159091|family with sequence similarity 122C##BC063491|FAM122C|159091|family with sequence similarity 122C##BC065225|FAM122C|159091|family with sequence similarity 122C##BC019221|FAM122B|159090|family with sequence similarity 122B##NM_001166599|FAM122B|159090|family with sequence similarity 122B##AK124650|FAM122B|159090|family with sequence similarity 122B##AK297720|FAM122B|159090|family with sequence similarity 122B##NM_001166600|FAM122B|159090|family with sequence similarity 122B##NM_001170757|FAM122B|159090|family with sequence similarity 122B##BC008642|CXorf69|644538|chromosome X open reading frame 69##NM_001163438|CXorf69|644538|chromosome X open reading frame 69##HQ258053|FAM127C|441518|family with sequence similarity 127, member C##BC063496|FAM127C|441518|family with sequence similarity 127, member C##BC073159|FAM127C|441518|family with sequence similarity 127, member C##BC113720|FAM127C|441518|family with sequence similarity 127, member C##BC117393|FAM127C|441518|family with sequence similarity 127, member C##BC086860|FAM127C|441518|family with sequence similarity 127, member C##NM_001078173|FAM127C|441518|family with sequence similarity 127, member C##NM_001078171|FAM127A|8933|family with sequence similarity 127, member A##Y13374|FAM127A|8933|family with sequence similarity 127, member A##AF038168|FAM127A|8933|family with sequence similarity 127, member A##AF052096|FAM127A|8933|family with sequence similarity 127, member A##BC106076|FAM127A|8933|family with sequence similarity 127, member A##BC002385|FAM127A|8933|family with sequence similarity 127, member A##BC002410|FAM127A|8933|family with sequence similarity 127, member A	0.997621	0.776342	CTCF.p2:-16:0.776	denovo_WM_7:31:0.527	denovo_WM_7:32:0.470
chr19	10369751	10369900	reg1000168.p1	17.359	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	-6833	+	TSC_hg19_v1_chr19_+_10362889 BC009858	-6927	+	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	-7178	+	NM_000201	11691	+	M24283 BC015969 AK301412 J03132 TSC_hg19_v1_chr19_+_10381795 AK130659 AK312636 AK298054 AK298983 X06990 AB590404 AF340038 BT006854 AF340039	11980	+	BC029364 NM_001039132 NM_001544 NM_022377 BC000046 L27670 L27671 S78852 DQ892650 DQ895889 BT009816	27840	+	AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##NM_000201|ICAM1|3383|intercellular adhesion molecule 1##M24283|ICAM1|3383|intercellular adhesion molecule 1##BC015969|ICAM1|3383|intercellular adhesion molecule 1##AK301412|ICAM1|3383|intercellular adhesion molecule 1##J03132|ICAM1|3383|intercellular adhesion molecule 1##AK130659|ICAM1|3383|intercellular adhesion molecule 1##AK312636|ICAM1|3383|intercellular adhesion molecule 1##AK298054|ICAM1|3383|intercellular adhesion molecule 1##AK298983|ICAM1|3383|intercellular adhesion molecule 1##X06990|ICAM1|3383|intercellular adhesion molecule 1##AF340038|ICAM1|3383|intercellular adhesion molecule 1##BT006854|ICAM1|3383|intercellular adhesion molecule 1##AF340039|ICAM1|3383|intercellular adhesion molecule 1##BC029364|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_001039132|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_001544|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_022377|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##BC000046|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##L27670|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##L27671|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##S78852|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##DQ892650|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##DQ895889|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##BT009816|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	1.241081	0.960535	CTCF.p2:28:0.961	denovo_WM_7:-30:0.256	denovo_WM_7:-45:0.246
chr11	3585778	3585890	reg1000197.p1	17.321	+	BC121028 BC121029 AF003540 TSC_hg19_v1_chr11_-_3400362 AK308209 AL833722 AK290099 AK308068 AK131296 AK095720 AK293679 AK308024 NM_001130519 NM_001130520 NM_001242841 NM_001242842 NM_001242843 NM_007152	-185455	-	AK293940 NM_001039165	-332219	-	AB529240 AY255583 NM_001164377	-345792	-	NM_053017 NM_001079536 Y16835	77680	-	BC017828 BC069102 NM_004314 S74683 BC111729	80536	+	AB528800 AJ278118 AJ295237 BC136250 BC143303 AF199235 NM_020402	106744	-	BC121028|ZNF195|7748|zinc finger protein 195##BC121029|ZNF195|7748|zinc finger protein 195##AF003540|ZNF195|7748|zinc finger protein 195##AK308209|ZNF195|7748|zinc finger protein 195##AL833722|ZNF195|7748|zinc finger protein 195##AK290099|ZNF195|7748|zinc finger protein 195##AK308068|ZNF195|7748|zinc finger protein 195##AK131296|ZNF195|7748|zinc finger protein 195##AK095720|ZNF195|7748|zinc finger protein 195##AK293679|ZNF195|7748|zinc finger protein 195##AK308024|ZNF195|7748|zinc finger protein 195##NM_001130519|ZNF195|7748|zinc finger protein 195##NM_001130520|ZNF195|7748|zinc finger protein 195##NM_001242841|ZNF195|7748|zinc finger protein 195##NM_001242842|ZNF195|7748|zinc finger protein 195##NM_001242843|ZNF195|7748|zinc finger protein 195##NM_007152|ZNF195|7748|zinc finger protein 195##AK293940|MRGPRE|116534|MAS-related GPR, member E##NM_001039165|MRGPRE|116534|MAS-related GPR, member E##AY255583|MRGPRG|386746|MAS-related GPR, member G##NM_001164377|MRGPRG|386746|MAS-related GPR, member G##NM_053017|ART5|116969|ADP-ribosyltransferase 5##NM_001079536|ART5|116969|ADP-ribosyltransferase 5##Y16835|ART5|116969|ADP-ribosyltransferase 5##BC017828|ART1|417|ADP-ribosyltransferase 1##BC069102|ART1|417|ADP-ribosyltransferase 1##NM_004314|ART1|417|ADP-ribosyltransferase 1##S74683|ART1|417|ADP-ribosyltransferase 1##BC111729|ART1|417|ADP-ribosyltransferase 1##AJ278118|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AJ295237|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC136250|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC143303|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AF199235|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##NM_020402|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10	1.185448	0.0	
chr18	3593940	3594119	reg1000151.p2	17.287	+	NM_173211	-140258	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-142398	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-143949	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	113	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	251301	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	280255	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.989359	0.0	denovo_WM_7:-11:0.425	denovo_WM_7:-12:0.425
chr6	97731155	97731313	reg1000140.p1	17.282	+	AK128060 NM_198468 BC142948 TSC_hg19_v1_chr6_-_97731095 CR749822	-144	-	NM_052904 AK055292 BC071627 TSC_hg19_v1_chr6_+_97372638 AK295479 AF351610 AK297240	-358611	+	TSC_hg19_v1_chr6_-_97345768 NM_014165	-385470	-	AK095588 NM_005604 TSC_hg19_v1_chr6_+_99282579	1551346	+	Z11933 TSC_hg19_v1_chr6_+_99282600 BC051699 AB385538	1551438	+	TSC_hg19_v1_chr6_-_99395800 BC091484 BC032641	1664555	-	AK128060|MMS22L|253714|MMS22-like, DNA repair protein##NM_198468|MMS22L|253714|MMS22-like, DNA repair protein##BC142948|MMS22L|253714|MMS22-like, DNA repair protein##CR749822|MMS22L|253714|MMS22-like, DNA repair protein##NM_052904|KLHL32|114792|kelch-like 32 (Drosophila)##AK055292|KLHL32|114792|kelch-like 32 (Drosophila)##BC071627|KLHL32|114792|kelch-like 32 (Drosophila)##AK295479|KLHL32|114792|kelch-like 32 (Drosophila)##AF351610|KLHL32|114792|kelch-like 32 (Drosophila)##AK297240|KLHL32|114792|kelch-like 32 (Drosophila)##NM_014165|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AK095588|POU3F2|5454|POU class 3 homeobox 2##NM_005604|POU3F2|5454|POU class 3 homeobox 2##Z11933|POU3F2|5454|POU class 3 homeobox 2##BC051699|POU3F2|5454|POU class 3 homeobox 2##BC091484|FBXL4|26235|F-box and leucine-rich repeat protein 4##BC032641|FBXL4|26235|F-box and leucine-rich repeat protein 4	1.018412	0.0	denovo_WM_7:39:0.694
chr19	46898909	46899020	reg1000152.p1	17.272	+	TSC_hg19_v1_chr19_+_46850348 AB527518 AK293402 AK297095 BT007275 BC000750 BC001831 X89416 U25174	-48605	+	TSC_hg19_v1_chr19_+_46850343 NM_001204284 NM_006247 BC001970 AK223222 AK312683	-48670	+	AK021881 TSC_hg19_v1_chr19_+_46844054	-54956	+	AK297668 AL136609 JN703457 NM_032040	17907	-	AL834344 TSC_hg19_v1_chr19_-_46974751 AK290218 BC051688	75758	-	TSC_hg19_v1_chr19_-_46974789 BC032508 NM_001103149 NM_018215	75841	-	AK293402|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297095|PPP5C|5536|protein phosphatase 5, catalytic subunit##BT007275|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC000750|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001831|PPP5C|5536|protein phosphatase 5, catalytic subunit##X89416|PPP5C|5536|protein phosphatase 5, catalytic subunit##U25174|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_001204284|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_006247|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001970|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK223222|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK312683|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK021881|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK297668|CCDC8|83987|coiled-coil domain containing 8##AL136609|CCDC8|83987|coiled-coil domain containing 8##JN703457|CCDC8|83987|coiled-coil domain containing 8##NM_032040|CCDC8|83987|coiled-coil domain containing 8##AL834344|PNMAL1|55228|PNMA-like 1##AK290218|PNMAL1|55228|PNMA-like 1##BC051688|PNMAL1|55228|PNMA-like 1##BC032508|PNMAL1|55228|PNMA-like 1##NM_001103149|PNMAL1|55228|PNMA-like 1##NM_018215|PNMAL1|55228|PNMA-like 1	1.686252	1.053992	CTCF.p2:50:0.996	denovo_WM_7:-53:0.543	denovo_WM_7:-68:0.533
chr11	118955805	118955980	reg1000130.p2	17.269	+	TSC_hg19_v1_chr11_+_118955594 NM_000190 AK290275 AK309544 AK310343 BC000520 BC019323 AK000628 D28419 AK131072 BC008149 X04808 CU678879	-237	+	TSC_hg19_v1_chr11_+_118938530 AK302973 AF308800 AB527816	-17359	+	BC065563 TSC_hg19_v1_chr11_+_118938528	-17364	+	BX647328 NM_001024382 X04217	2818	+	CR457079 AB464561 BC013416 BC004915 BC011694 TSC_hg19_v1_chr11_-_118966173	10246	-	TSC_hg19_v1_chr11_-_118966176 NM_002105 X14850	10283	-	NM_000190|HMBS|3145|hydroxymethylbilane synthase##AK290275|HMBS|3145|hydroxymethylbilane synthase##AK309544|HMBS|3145|hydroxymethylbilane synthase##AK310343|HMBS|3145|hydroxymethylbilane synthase##BC000520|HMBS|3145|hydroxymethylbilane synthase##BC019323|HMBS|3145|hydroxymethylbilane synthase##AK000628|HMBS|3145|hydroxymethylbilane synthase##D28419|HMBS|3145|hydroxymethylbilane synthase##AK131072|HMBS|3145|hydroxymethylbilane synthase##BC008149|HMBS|3145|hydroxymethylbilane synthase##X04808|HMBS|3145|hydroxymethylbilane synthase##AK302973|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##AF308800|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##BC065563|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##BX647328|HMBS|3145|hydroxymethylbilane synthase##NM_001024382|HMBS|3145|hydroxymethylbilane synthase##X04217|HMBS|3145|hydroxymethylbilane synthase##CR457079|H2AFX|3014|H2A histone family, member X##BC013416|H2AFX|3014|H2A histone family, member X##BC004915|H2AFX|3014|H2A histone family, member X##BC011694|H2AFX|3014|H2A histone family, member X##NM_002105|H2AFX|3014|H2A histone family, member X##X14850|H2AFX|3014|H2A histone family, member X	1.987218	0.0	denovo_WM_7:-2:0.713	denovo_WM_7:-3:0.275	denovo_WM_7:12:0.849
chr8	71520546	71520688	reg1000189.p1	17.264	+	BT007359 CR541654 CR541739 DQ892688 DQ895932 TSC_hg19_v1_chr8_-_71520586 AK292777 BC020283 BC000687 AK289397 X63679 BC037738	-95	-	TSC_hg19_v1_chr8_-_71316041 NM_006540 X97674 AK308426	-204591	-	BC092442 TSC_hg19_v1_chr8_-_71315599	-205070	-	TSC_hg19_v1_chr8_-_71520654 AK303411 NM_014294	39	-	CU674436 EU831796 EU831873 TSC_hg19_v1_chr8_-_71581401 AF151841 AK222699 AK290201	60767	-	TSC_hg19_v1_chr8_-_71581419 BC000878 BC008505 NM_016027	60832	-	BT007359|TRAM1|23471|translocation associated membrane protein 1##CR541654|TRAM1|23471|translocation associated membrane protein 1##CR541739|TRAM1|23471|translocation associated membrane protein 1##DQ892688|TRAM1|23471|translocation associated membrane protein 1##DQ895932|TRAM1|23471|translocation associated membrane protein 1##AK292777|TRAM1|23471|translocation associated membrane protein 1##BC020283|TRAM1|23471|translocation associated membrane protein 1##BC000687|TRAM1|23471|translocation associated membrane protein 1##AK289397|TRAM1|23471|translocation associated membrane protein 1##X63679|TRAM1|23471|translocation associated membrane protein 1##BC037738|TRAM1|23471|translocation associated membrane protein 1##NM_006540|NCOA2|10499|nuclear receptor coactivator 2##X97674|NCOA2|10499|nuclear receptor coactivator 2##AK308426|NCOA2|10499|nuclear receptor coactivator 2##BC092442|NCOA2|10499|nuclear receptor coactivator 2##AK303411|TRAM1|23471|translocation associated membrane protein 1##NM_014294|TRAM1|23471|translocation associated membrane protein 1##EU831796|LACTB2|51110|lactamase, beta 2##EU831873|LACTB2|51110|lactamase, beta 2##AF151841|LACTB2|51110|lactamase, beta 2##AK222699|LACTB2|51110|lactamase, beta 2##AK290201|LACTB2|51110|lactamase, beta 2##BC000878|LACTB2|51110|lactamase, beta 2##BC008505|LACTB2|51110|lactamase, beta 2##NM_016027|LACTB2|51110|lactamase, beta 2	0.877633	0.199522	denovo_WM_7:0:0.224	denovo_WM_7:0:0.361
chr2	233470601	233470754	reg1000142.p1	17.258	+	TSC_hg19_v1_chr2_+_233415410 NM_004846 BC005874 AB209519 AK022518 AK303802 BC005392 BC021690 AF038957 AF047695 BC000360 AF068117 BC021226 CU676880	-55232	+	TSC_hg19_v1_chr2_-_233415301 BC035143	-55358	-	TSC_hg19_v1_chr2_-_233415265 AK056329 NM_145702 BC063500	-55442	-	AK310565 NM_001243252	89	+	TSC_hg19_v1_chr2_+_233497966 AK293581	27293	+	NM_025202 TSC_hg19_v1_chr2_+_233498314 AK315442 BC035476 AK023674 BC002449 AB209715 BC004128 AF218006 BC071886 AB385018	27631	+	NM_004846|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC005874|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AB209519|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AK022518|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AK303802|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC005392|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC021690|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF038957|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF047695|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC000360|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF068117|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC021226|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC035143|TIGD1|200765|tigger transposable element derived 1##AK056329|TIGD1|200765|tigger transposable element derived 1##NM_145702|TIGD1|200765|tigger transposable element derived 1##BC063500|TIGD1|200765|tigger transposable element derived 1##AK310565|EFHD1|80303|EF-hand domain family, member D1##NM_001243252|EFHD1|80303|EF-hand domain family, member D1##AK293581|EFHD1|80303|EF-hand domain family, member D1##NM_025202|EFHD1|80303|EF-hand domain family, member D1##AK315442|EFHD1|80303|EF-hand domain family, member D1##BC035476|EFHD1|80303|EF-hand domain family, member D1##AK023674|EFHD1|80303|EF-hand domain family, member D1##BC002449|EFHD1|80303|EF-hand domain family, member D1##AB209715|EFHD1|80303|EF-hand domain family, member D1##BC004128|EFHD1|80303|EF-hand domain family, member D1##AF218006|EFHD1|80303|EF-hand domain family, member D1##BC071886|EFHD1|80303|EF-hand domain family, member D1	0.995856	0.963742	CTCF.p2:17:0.964
chr12	1058844	1058998	reg1000175.p1	17.238	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-95	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-41839	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-196165	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	41531	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	644430	-	AY009399 NM_030775	667300	+	AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B	0.845645	0.0	denovo_WM_7:7:0.205	denovo_WM_7:8:0.207	denovo_WM_7:9:0.315
chr12	49147365	49147480	reg1000179.p1	17.233	+	AF045161 EF688064 TSC_hg19_v1_chr12_-_49110514 AF048730 AK290990 NM_001240	-36804	-	TSC_hg19_v1_chr12_-_49075997 AK000443 BC009746 AK094528 NM_017822	-71404	-	AB590798 CR541987 CR542017 HQ258062 J00270 BC112316 BC112318 BC069103 NM_002289	-183607	-	AK225224 NM_015270 AF250226	30471	-	TSC_hg19_v1_chr12_-_49182812 AB007882 NM_020983 BC064923	35386	-	NM_001206917 AK304537 AK300901	60816	+	AF045161|CCNT1|904|cyclin T1##EF688064|CCNT1|904|cyclin T1##AF048730|CCNT1|904|cyclin T1##AK290990|CCNT1|904|cyclin T1##NM_001240|CCNT1|904|cyclin T1##AK000443|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##BC009746|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##AK094528|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##NM_017822|KANSL2|54934|KAT8 regulatory NSL complex subunit 2##CR541987|LALBA|3906|lactalbumin, alpha-##CR542017|LALBA|3906|lactalbumin, alpha-##HQ258062|LALBA|3906|lactalbumin, alpha-##J00270|LALBA|3906|lactalbumin, alpha-##BC112316|LALBA|3906|lactalbumin, alpha-##BC112318|LALBA|3906|lactalbumin, alpha-##BC069103|LALBA|3906|lactalbumin, alpha-##NM_002289|LALBA|3906|lactalbumin, alpha-##AK225224|ADCY6|112|adenylate cyclase 6##NM_015270|ADCY6|112|adenylate cyclase 6##AF250226|ADCY6|112|adenylate cyclase 6##AB007882|ADCY6|112|adenylate cyclase 6##NM_020983|ADCY6|112|adenylate cyclase 6##BC064923|ADCY6|112|adenylate cyclase 6##NM_001206917|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK304537|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK300901|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit	1.949482	0.981879	CTCF.p2:12:0.982	denovo_WM_7:50:0.818	denovo_WM_7:65:0.389	denovo_WM_7:66:0.422
chrX	56790234	56790366	reg1000176.p1	17.176	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-34609	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-200249	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-531390	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	231671	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	357628	-	BC071694 NM_019003	373757	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.9504	0.360615	denovo_WM_7:-40:0.698	CTCF.p2:70:0.361
chr8	7305809	7305940	reg1000183.p1	17.139	+	AF301470 NM_001081551	-18005	-	AB590071 AF217245 AF516673 AB037972 AJ237673 NM_018661 AF295370	-18206	-	NM_001205266	-31521	-	NM_058206 NM_058207	4012	-	AJ628017 AF168617 AJ635328 AF168616 NM_016512 NM_058200 NM_058201 NM_058202 NM_058203	15235	-	AJ314834 BC100848 BC100849 BC100850 BC100851 NM_001040702 NM_080389	26729	-	AF301470|DEFB103B|55894|defensin, beta 103B##NM_001081551|DEFB103A|414325|defensin, beta 103A##AF217245|DEFB103B|55894|defensin, beta 103B##AF516673|DEFB103B|55894|defensin, beta 103B##AB037972|DEFB103B|55894|defensin, beta 103B##AJ237673|DEFB103B|55894|defensin, beta 103B##NM_018661|DEFB103B|55894|defensin, beta 103B##AF295370|DEFB103B|55894|defensin, beta 103B##NM_001205266|DEFB4B|100289462|defensin, beta 4B##NM_058206|SPAG11B|10407|sperm associated antigen 11B##NM_058207|SPAG11B|10407|sperm associated antigen 11B##AJ628017|SPAG11B|10407|sperm associated antigen 11B##AF168617|SPAG11B|10407|sperm associated antigen 11B##AJ635328|SPAG11B|10407|sperm associated antigen 11B##AF168616|SPAG11B|10407|sperm associated antigen 11B##NM_016512|SPAG11B|10407|sperm associated antigen 11B##NM_058200|SPAG11B|10407|sperm associated antigen 11B##NM_058201|SPAG11B|10407|sperm associated antigen 11B##NM_058202|SPAG11B|10407|sperm associated antigen 11B##NM_058203|SPAG11B|10407|sperm associated antigen 11B##AJ314834|DEFB104A|140596|defensin, beta 104A##BC100848|DEFB104A|140596|defensin, beta 104A##BC100849|DEFB104A|140596|defensin, beta 104A##BC100850|DEFB104A|140596|defensin, beta 104A##BC100851|DEFB104A|140596|defensin, beta 104A##NM_001040702|DEFB104B|503618|defensin, beta 104B##NM_080389|DEFB104A|140596|defensin, beta 104A	1.990692	0.0	denovo_WM_7:-26:0.955	denovo_WM_7:-41:0.973
chr3	127309593	127309754	reg1000193.p1	17.138	+	BC050711 NM_001136053 AF289568 TSC_hg19_v1_chr3_-_127309565 NM_001142646	-140	-	TSC_hg19_v1_chr3_-_127309338 BC017058	-329	-	AB037108 NM_016372	-10394	-	TSC_hg19_v1_chr3_+_127317252 AK128291 AK299934 AK309335 NM_004526 BC014272 BC007670	7567	+	AK304204 BC017258 TSC_hg19_v1_chr3_+_127317271	7598	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	7611	+	BC050711|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001136053|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AF289568|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001142646|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##BC017058|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AB037108|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_016372|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AK128291|MCM2|4171|minichromosome maintenance complex component 2##AK299934|MCM2|4171|minichromosome maintenance complex component 2##AK309335|MCM2|4171|minichromosome maintenance complex component 2##NM_004526|MCM2|4171|minichromosome maintenance complex component 2##BC014272|MCM2|4171|minichromosome maintenance complex component 2##BC007670|MCM2|4171|minichromosome maintenance complex component 2##AK304204|MCM2|4171|minichromosome maintenance complex component 2##BC017258|MCM2|4171|minichromosome maintenance complex component 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2	0.991327	0.0	denovo_WM_7:-1:0.714	denovo_WM_7:-2:0.277
chr15	75746488	75746649	reg1000153.p2	17.133	+	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	-2511	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	-2666	-	AK225145 TSC_hg19_v1_chr15_-_75660949 AK294892 AK301170 AK311065	-85611	-	AL832463 NM_001145357	1555	-	CU687108 TSC_hg19_v1_chr15_-_75871151 BT007405 CU679831 DQ890986 BC010863	124551	-	TSC_hg19_v1_chr15_-_75871604 M83738 NM_002833	124998	-	AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK225145|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK294892|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK301170|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK311065|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BT007405|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##DQ890986|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##BC010863|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##M83738|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##NM_002833|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9	0.0	0.0	
chr11	124543697	124543832	reg1000182.p1	17.119	+	AL137496 EU831959 CU691938 TSC_hg19_v1_chr11_-_124543619 AF303378 BC022456 AK056093 BC040966 BC068450 NM_170601	-77	-	BC018452 TSC_hg19_v1_chr11_+_124492787 BC064392 BC032312 BC073160 BC109269 DQ144542	-50888	+	AK027527 AK057749 TSC_hg19_v1_chr11_+_124492770	-50994	+	AF334735 NM_017425 AK311806 AK307271 BC019224	11	+	AF300796 NM_001199922	2434	-	TSC_hg19_v1_chr11_+_124609837 NM_001126181 NM_006176 U89165	66043	+	AL137496|SIAE|54414|sialic acid acetylesterase##EU831959|SIAE|54414|sialic acid acetylesterase##AF303378|SIAE|54414|sialic acid acetylesterase##BC022456|SIAE|54414|sialic acid acetylesterase##AK056093|SIAE|54414|sialic acid acetylesterase##BC040966|SIAE|54414|sialic acid acetylesterase##BC068450|SIAE|54414|sialic acid acetylesterase##NM_170601|SIAE|54414|sialic acid acetylesterase##BC018452|TBRG1|84897|transforming growth factor beta regulator 1##BC064392|TBRG1|84897|transforming growth factor beta regulator 1##BC032312|TBRG1|84897|transforming growth factor beta regulator 1##BC073160|TBRG1|84897|transforming growth factor beta regulator 1##BC109269|TBRG1|84897|transforming growth factor beta regulator 1##DQ144542|TBRG1|84897|transforming growth factor beta regulator 1##AK027527|TBRG1|84897|transforming growth factor beta regulator 1##AK057749|TBRG1|84897|transforming growth factor beta regulator 1##AF334735|SPA17|53340|sperm autoantigenic protein 17##NM_017425|SPA17|53340|sperm autoantigenic protein 17##AK311806|SPA17|53340|sperm autoantigenic protein 17##AK307271|SPA17|53340|sperm autoantigenic protein 17##BC019224|SPA17|53340|sperm autoantigenic protein 17##AF300796|SIAE|54414|sialic acid acetylesterase##NM_001199922|SIAE|54414|sialic acid acetylesterase##NM_001126181|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##NM_006176|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##U89165|NRGN|4900|neurogranin (protein kinase C substrate, RC3)	0.999375	0.0	denovo_WM_7:5:0.848
chr18	12883796	12883937	reg1000107.p1	17.116	+	TSC_hg19_v1_chr18_+_12703040 NM_020232 AK225882 AF168712 AK057005 BC013356 CU680576	-180830	+	TSC_hg19_v1_chr18_-_12702776 AK298223	-181102	-	TSC_hg19_v1_chr18_-_12702689 AK022604 BC033026 AL833727 BC026307 NM_024899 AK303117	-181191	-	CU678897 AB590517 BC008244 TSC_hg19_v1_chr18_-_12884237 M25393 AK225706 AK290649 AK292570 BC016727 NM_001207013 NM_002828 NM_080422 NM_080423	370	-	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	64119	+	TSC_hg19_v1_chr18_+_12948009 AK314403	64140	+	NM_020232|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK225882|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF168712|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK057005|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##BC013356|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK298223|CEP76|79959|centrosomal protein 76kDa##AK022604|CEP76|79959|centrosomal protein 76kDa##BC033026|CEP76|79959|centrosomal protein 76kDa##AL833727|CEP76|79959|centrosomal protein 76kDa##BC026307|CEP76|79959|centrosomal protein 76kDa##NM_024899|CEP76|79959|centrosomal protein 76kDa##AK303117|CEP76|79959|centrosomal protein 76kDa##BC008244|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##M25393|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK225706|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK290649|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK292570|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##BC016727|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001207013|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_002828|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080422|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080423|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)	0.999844	0.0	
chr11	133280439	133280614	reg1000102.p1	17.110	+	AK314077 EU562295 EU562297 AK316491 TSC_hg19_v1_chr11_-_132813671	-466921	-	EU562299 BC117254 BC126251 BC143945 BC143946 BC074742 BC074773 L34774 NM_002545 AK289695	-467512	-	TSC_hg19_v1_chr11_+_131781303 EF043567 BC050716 CU690778	-1499187	+	AK315859 AK315859 TSC_hg19_v1_chr11_-_133402298 BX537377 NM_001012393	121788	-	AF521713 AK098717 NM_174927 BC058039	434855	-	NM_014987 TSC_hg19_v1_chr11_-_133826886	546356	-	AK314077|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562295|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562297|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK316491|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562299|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC117254|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC126251|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143945|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143946|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074742|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074773|OPCML|4978|opioid binding protein/cell adhesion molecule-like##L34774|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_002545|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK289695|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EF043567|NTM|50863|neurotrimin##BC050716|NTM|50863|neurotrimin##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BX537377|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_001012393|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AF521713|SPATA19|219938|spermatogenesis associated 19##AK098717|SPATA19|219938|spermatogenesis associated 19##NM_174927|SPATA19|219938|spermatogenesis associated 19##BC058039|SPATA19|219938|spermatogenesis associated 19##NM_014987|IGSF9B|22997|immunoglobulin superfamily, member 9B	3.679945	0.0	denovo_WM_7:0:0.320	denovo_WM_7:2:0.411	denovo_WM_7:17:0.218	denovo_WM_7:-32:0.777	denovo_WM_7:34:0.215	denovo_WM_7:35:0.282
chr1	228594520	228594643	reg1000097.p1	17.098	+	TSC_hg19_v1_chr1_-_228594537 AK314539 AK074866 BC069227 AF327056 NM_145214	-79	-	TSC_hg19_v1_chr1_-_228463735 AK294019	-130834	-	TSC_hg19_v1_chr1_-_228401360 BC027909 AK056556	-193222	-	AF156271 AK316379 BC023999 BC033788 AK301105 TSC_hg19_v1_chr1_-_228604397 AK308774	9800	-	NM_001024940 NM_001134855 NM_016102 TSC_hg19_v1_chr1_-_228604584	10004	-	BC069079 CR542013 NM_003493 AK312217 BC101837 BC101839	18468	-	AK314539|TRIM11|81559|tripartite motif containing 11##AK074866|TRIM11|81559|tripartite motif containing 11##BC069227|TRIM11|81559|tripartite motif containing 11##AF327056|TRIM11|81559|tripartite motif containing 11##NM_145214|TRIM11|81559|tripartite motif containing 11##BC027909|C1orf145|574407|chromosome 1 open reading frame 145##AK056556|C1orf145|574407|chromosome 1 open reading frame 145##AF156271|TRIM17|51127|tripartite motif containing 17##AK316379|TRIM17|51127|tripartite motif containing 17##BC023999|TRIM17|51127|tripartite motif containing 17##BC033788|TRIM17|51127|tripartite motif containing 17##AK301105|TRIM17|51127|tripartite motif containing 17##AK308774|TRIM17|51127|tripartite motif containing 17##NM_001024940|TRIM17|51127|tripartite motif containing 17##NM_001134855|TRIM17|51127|tripartite motif containing 17##NM_016102|TRIM17|51127|tripartite motif containing 17##BC069079|HIST3H3|8290|histone cluster 3, H3##CR542013|HIST3H3|8290|histone cluster 3, H3##NM_003493|HIST3H3|8290|histone cluster 3, H3##AK312217|HIST3H3|8290|histone cluster 3, H3##BC101837|HIST3H3|8290|histone cluster 3, H3##BC101839|HIST3H3|8290|histone cluster 3, H3	1.990914	0.0	denovo_WM_7:-3:0.221	denovo_WM_7:18:0.221
chr17	7816401	7816525	reg1000158.p1	17.097	+	TSC_hg19_v1_chr17_+_7812703 AK096555	-3703	+	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	-24362	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	-28352	+	AF016411 BC096232 BC096233 BC096234 BC099634 NM_004732	16289	-	AB528455 DQ890860 DQ894015 BC025413 TSC_hg19_v1_chr17_-_7835265 BC032717 AK314038 NM_021210 NM_001166621	18797	-	NM_001037144 NM_053051 AY160226 AY160227 TSC_hg19_v1_chr17_+_7835522 AK293076 AF331638 BC021134 AL833907	19066	+	AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##AF016411|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096232|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096233|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096234|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC099634|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##NM_004732|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##DQ890860|TRAPPC1|58485|trafficking protein particle complex 1##DQ894015|TRAPPC1|58485|trafficking protein particle complex 1##BC025413|TRAPPC1|58485|trafficking protein particle complex 1##BC032717|TRAPPC1|58485|trafficking protein particle complex 1##AK314038|TRAPPC1|58485|trafficking protein particle complex 1##NM_021210|TRAPPC1|58485|trafficking protein particle complex 1##NM_001166621|TRAPPC1|58485|trafficking protein particle complex 1##NM_001037144|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##NM_053051|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##AY160226|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##AY160227|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##AK293076|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##AF331638|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##BC021134|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein##AL833907|CNTROB|116840|centrobin, centrosomal BRCA2 interacting protein	0.999785	0.103657	
chr17	66031619	66031789	reg1000141.p2	17.074	+	BC105124 BC112073 BC036760 TSC_hg19_v1_chr17_-_65989703 AK026583 NM_181655 NM_181656	-42031	-	TSC_hg19_v1_chr17_+_65936590 AK027184	-95070	+	AK022570 TSC_hg19_v1_chr17_+_65916176	-115535	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	136	+	TSC_hg19_v1_chr17_+_66031889 BC034443	184	+	TSC_hg19_v1_chr17_+_66097706 BC045718	65994	+	BC105124|C17orf58|284018|chromosome 17 open reading frame 58##BC112073|C17orf58|284018|chromosome 17 open reading frame 58##BC036760|C17orf58|284018|chromosome 17 open reading frame 58##AK026583|C17orf58|284018|chromosome 17 open reading frame 58##NM_181655|C17orf58|284018|chromosome 17 open reading frame 58##NM_181656|C17orf58|284018|chromosome 17 open reading frame 58##AK027184|BPTF|2186|bromodomain PHD finger transcription factor##AK022570|BPTF|2186|bromodomain PHD finger transcription factor##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC045718|LOC100499466|100499466|uncharacterized LOC100499466	0.99706	0.0	denovo_WM_7:-14:0.499	denovo_WM_7:-17:0.249
chr15	44042151	44042312	reg1000160.p1	17.072	+	TSC_hg19_v1_chr15_+_44038685 U42068 D16234 D83485 AB527303 CU690254 DQ893070 DQ896325	-3449	+	TSC_hg19_v1_chr15_+_44038656 AK075455	-3578	+	TSC_hg19_v1_chr15_+_44038635 NM_005313 AK075481 AK293249 BC036000 Z49835 BC071878 BC014433	-3666	+	TSC_hg19_v1_chr15_+_44069338 NM_001199877 BC009869	27074	+	NM_025165	27270	-	BC008214 NM_001018108 NM_001199875 NM_001199876 TSC_hg19_v1_chr15_+_44084335	41988	+	U42068|PDIA3|2923|protein disulfide isomerase family A, member 3##D16234|PDIA3|2923|protein disulfide isomerase family A, member 3##D83485|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ893070|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ896325|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075455|PDIA3|2923|protein disulfide isomerase family A, member 3##NM_005313|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075481|PDIA3|2923|protein disulfide isomerase family A, member 3##AK293249|PDIA3|2923|protein disulfide isomerase family A, member 3##BC036000|PDIA3|2923|protein disulfide isomerase family A, member 3##Z49835|PDIA3|2923|protein disulfide isomerase family A, member 3##BC071878|PDIA3|2923|protein disulfide isomerase family A, member 3##BC014433|PDIA3|2923|protein disulfide isomerase family A, member 3##NM_001199877|SERF2|10169|small EDRK-rich factor 2##BC009869|SERF2|10169|small EDRK-rich factor 2##NM_025165|ELL3|80237|elongation factor RNA polymerase II-like 3##BC008214|SERF2|10169|small EDRK-rich factor 2##NM_001018108|SERF2|10169|small EDRK-rich factor 2##NM_001199875|SERF2|10169|small EDRK-rich factor 2##NM_001199876|SERF2|10169|small EDRK-rich factor 2	1.958865	0.0	denovo_WM_7:48:0.323	denovo_WM_7:49:0.340	denovo_WM_7:50:0.254	denovo_WM_7:-60:0.421	denovo_WM_7:-61:0.477
chr8	42029311	42029437	reg1000137.p2	17.070	+	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	-18841	+	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	-119875	-	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-275064	-	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	35714	-	AK289387 AK290575 NM_000930 NM_033011 TSC_hg19_v1_chr8_-_42065195	35820	-	TSC_hg19_v1_chr8_+_42128819 NM_001190720 NM_001242778 NM_001556	99434	+	NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue##AK289387|PLAT|5327|plasminogen activator, tissue##AK290575|PLAT|5327|plasminogen activator, tissue##NM_000930|PLAT|5327|plasminogen activator, tissue##NM_033011|PLAT|5327|plasminogen activator, tissue##NM_001190720|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001242778|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001556|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	0.996929	0.0	
chr3	101231971	101232143	reg1000139.p1	17.048	+	AM392620 AM393440 TSC_hg19_v1_chr3_-_101232029 AK297356 BC129988 BC062674 BX537943 AL833577 AF199458 NM_001077203 NM_020654	-29	-	AF173155 AB593127 NM_016247 DQ980603 DQ980602	-192635	-	CU688850 EU832117 EU832211 AK025204 AL833204 BC030221 TSC_hg19_v1_chr3_-_100712327 NM_015429	-519767	-	TSC_hg19_v1_chr3_+_101280711 BC035967 AF226052 NM_017819 AK000439 AF086243 AF155111	48660	+	AK098760 TSC_hg19_v1_chr3_+_101293023	60948	+	TSC_hg19_v1_chr3_+_101293044 BC013916 CR627371 BC022001 AB037675 NM_020357 AK025551 AK222978 BC107796 AK314629 AB590038 DQ890799 DQ893953	60998	+	AM392620|SENP7|57337|SUMO1/sentrin specific peptidase 7##AM393440|SENP7|57337|SUMO1/sentrin specific peptidase 7##AK297356|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC129988|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC062674|SENP7|57337|SUMO1/sentrin specific peptidase 7##BX537943|SENP7|57337|SUMO1/sentrin specific peptidase 7##AL833577|SENP7|57337|SUMO1/sentrin specific peptidase 7##AF199458|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_001077203|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_020654|SENP7|57337|SUMO1/sentrin specific peptidase 7##AF173155|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##AB593127|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##NM_016247|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##EU832117|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##EU832211|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AK025204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AL833204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC030221|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##NM_015429|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC035967|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF226052|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##NM_017819|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK000439|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF086243|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF155111|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK098760|PCNP|57092|PEST proteolytic signal containing nuclear protein##BC013916|PCNP|57092|PEST proteolytic signal containing nuclear protein##CR627371|PCNP|57092|PEST proteolytic signal containing nuclear protein##BC022001|PCNP|57092|PEST proteolytic signal containing nuclear protein##AB037675|PCNP|57092|PEST proteolytic signal containing nuclear protein##NM_020357|PCNP|57092|PEST proteolytic signal containing nuclear protein##AK025551|PCNP|57092|PEST proteolytic signal containing nuclear protein##AK222978|PCNP|57092|PEST proteolytic signal containing nuclear protein##BC107796|PCNP|57092|PEST proteolytic signal containing nuclear protein##AK314629|PCNP|57092|PEST proteolytic signal containing nuclear protein##DQ890799|PCNP|57092|PEST proteolytic signal containing nuclear protein##DQ893953|PCNP|57092|PEST proteolytic signal containing nuclear protein	1.99652	0.0	denovo_WM_7:8:0.451	denovo_WM_7:9:0.309	denovo_WM_7:24:0.294	denovo_WM_7:25:0.435
chr2	86595552	86595694	reg1000208.p1	17.045	+	AK297287 NM_001164730	-30418	-	AY562239 CR457301 CU687956 AK297201 TSC_hg19_v1_chr2_-_86564750 BC064846 AK294300 AK297359 AK297373 AK299334 AK023172 NM_001164731 NM_001164732 NM_022912	-30890	-	NM_016622 NM_145644 TSC_hg19_v1_chr2_+_86426604 BC020651 AK074352 AK314555 AK314577 AF208849 AL832982 CU676602	-169039	+	NM_018433	72647	+	TSC_hg19_v1_chr2_+_86668482 BX647752 BX640698	72832	+	TSC_hg19_v1_chr2_+_86668501 BC038297 BX647271 BX649109 CR749581 AB018285 BX648841 NM_001146688	72912	+	AK297287|REEP1|65055|receptor accessory protein 1##NM_001164730|REEP1|65055|receptor accessory protein 1##AY562239|REEP1|65055|receptor accessory protein 1##CR457301|REEP1|65055|receptor accessory protein 1##AK297201|REEP1|65055|receptor accessory protein 1##BC064846|REEP1|65055|receptor accessory protein 1##AK294300|REEP1|65055|receptor accessory protein 1##AK297359|REEP1|65055|receptor accessory protein 1##AK297373|REEP1|65055|receptor accessory protein 1##AK299334|REEP1|65055|receptor accessory protein 1##AK023172|REEP1|65055|receptor accessory protein 1##NM_001164731|REEP1|65055|receptor accessory protein 1##NM_001164732|REEP1|65055|receptor accessory protein 1##NM_022912|REEP1|65055|receptor accessory protein 1##NM_016622|MRPL35|51318|mitochondrial ribosomal protein L35##NM_145644|MRPL35|51318|mitochondrial ribosomal protein L35##BC020651|MRPL35|51318|mitochondrial ribosomal protein L35##AK074352|MRPL35|51318|mitochondrial ribosomal protein L35##AK314555|MRPL35|51318|mitochondrial ribosomal protein L35##AK314577|MRPL35|51318|mitochondrial ribosomal protein L35##AF208849|MRPL35|51318|mitochondrial ribosomal protein L35##AL832982|MRPL35|51318|mitochondrial ribosomal protein L35##NM_018433|KDM3A|55818|lysine (K)-specific demethylase 3A##BX647752|KDM3A|55818|lysine (K)-specific demethylase 3A##BX640698|KDM3A|55818|lysine (K)-specific demethylase 3A##BC038297|KDM3A|55818|lysine (K)-specific demethylase 3A##BX647271|KDM3A|55818|lysine (K)-specific demethylase 3A##BX649109|KDM3A|55818|lysine (K)-specific demethylase 3A##CR749581|KDM3A|55818|lysine (K)-specific demethylase 3A##AB018285|KDM3A|55818|lysine (K)-specific demethylase 3A##BX648841|KDM3A|55818|lysine (K)-specific demethylase 3A##NM_001146688|KDM3A|55818|lysine (K)-specific demethylase 3A	1.928113	0.052327	denovo_WM_7:4:0.244	denovo_WM_7:6:0.493	denovo_WM_7:19:0.260	denovo_WM_7:21:0.525
chr18	23747738	23747893	reg1000219.p1	17.031	+	BC042820 NM_001025096 NM_001025097 NM_144662 BC025393 BC028371 BC028686 BC025389 BC047355 BC021713	-33967	+	AB527567 EU832762 GQ129305 AB300354 AB300355 AB300356 AB300357 AF230662 AF244972 AF257500 AF343880 BC096221 BC096222 BC096223 BC096224 CR542088 CR542103 X79201 TSC_hg19_v1_chr18_-_23670574 AK304305 AK316302 AK316338 AK299082 AK307923 AK289510 NM_001007559 NM_005637 AK301504	-77235	-	AJ518106 BC032869 TSC_hg19_v1_chr18_-_22932114 AK027354 AK293067 NM_015461	-815652	-	TSC_hg19_v1_chr18_+_23806444 NM_005640 AB234096	58602	+	NM_001142730 TSC_hg19_v1_chr18_-_24128518	380695	-	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	381426	-	BC042820|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025096|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025097|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_144662|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025393|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028371|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028686|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025389|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC047355|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC021713|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##EU832762|SS18|6760|synovial sarcoma translocation, chromosome 18##GQ129305|SS18|6760|synovial sarcoma translocation, chromosome 18##AF244972|SS18|6760|synovial sarcoma translocation, chromosome 18##AF343880|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096221|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096222|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096223|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096224|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542088|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542103|SS18|6760|synovial sarcoma translocation, chromosome 18##X79201|SS18|6760|synovial sarcoma translocation, chromosome 18##AK304305|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316302|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316338|SS18|6760|synovial sarcoma translocation, chromosome 18##AK299082|SS18|6760|synovial sarcoma translocation, chromosome 18##AK307923|SS18|6760|synovial sarcoma translocation, chromosome 18##AK289510|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_001007559|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_005637|SS18|6760|synovial sarcoma translocation, chromosome 18##AK301504|SS18|6760|synovial sarcoma translocation, chromosome 18##AJ518106|ZNF521|25925|zinc finger protein 521##BC032869|ZNF521|25925|zinc finger protein 521##AK027354|ZNF521|25925|zinc finger protein 521##AK293067|ZNF521|25925|zinc finger protein 521##NM_015461|ZNF521|25925|zinc finger protein 521##NM_005640|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AB234096|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1	0.99312	0.0	denovo_WM_7:1:0.238	denovo_WM_7:2:0.238	denovo_WM_7:3:0.238	denovo_WM_7:4:0.238
chr16	68754104	68754242	reg1000149.p3	16.995	+	X63629 TSC_hg19_v1_chr16_+_68679239 AB527800 EU832319 EU832404	-74919	+	TSC_hg19_v1_chr16_+_68679201 AK296968 AK312554 AK225396	-74968	+	NM_001793	-76023	+	AK312551 TSC_hg19_v1_chr16_+_68771194 AK297913 EU709494 NM_004360 BC141838 BC146662 L08599	17028	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	17046	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	17072	+	X63629|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832319|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832404|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK296968|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312554|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK225396|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##NM_001793|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312551|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK297913|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##EU709494|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##NM_004360|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC141838|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC146662|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##L08599|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)	1.006008	0.0	denovo_WM_7:2:0.906
chr19	13305443	13305569	reg1000205.p1	16.994	+	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-41326	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-44214	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-44367	-	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	311670	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	537073	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	553213	+	BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130	0.999607	0.994526	CTCF.p2:-1:0.995
chr12	97380862	97381002	reg1000221.p1	16.948	+	BC027605 NM_001135175	-79689	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	-79901	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-586615	-	TSC_hg19_v1_chr12_-_98897622 AK126817	1516695	-	TSC_hg19_v1_chr12_+_98909388 NM_001032283 NM_001032284 NM_003276 BC050383 BC053675	1528435	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	1528475	+	BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK126817|LOC643770|643770|uncharacterized LOC643770##NM_001032283|TMPO|7112|thymopoietin##NM_001032284|TMPO|7112|thymopoietin##NM_003276|TMPO|7112|thymopoietin##BC050383|TMPO|7112|thymopoietin##BC053675|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin	1.975834	0.919123	CTCF.p2:-15:0.919	denovo_WM_7:24:0.412	denovo_WM_7:25:0.485	denovo_WM_7:39:0.227	denovo_WM_7:40:0.710
chr10	22629230	22629376	reg1000147.p2	16.940	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-19138	+	TSC_hg19_v1_chr10_+_22605316 NM_001204062 NM_012071 BX647275 AF201948 BC022898 AF078848 AK128789 AK313235 AK295109 AY542159	-23978	+	TSC_hg19_v1_chr10_+_22540999 AK094582	-88290	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	5153	+	TSC_hg19_v1_chr10_+_22726003 AK295718	96696	+	AK294817 TSC_hg19_v1_chr10_-_23003038	373734	-	NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##NM_001204062|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##NM_012071|COMMD3|23412|COMM domain containing 3##BX647275|COMMD3|23412|COMM domain containing 3##AF201948|COMMD3|23412|COMM domain containing 3##BC022898|COMMD3|23412|COMM domain containing 3##AF078848|COMMD3|23412|COMM domain containing 3##AK128789|COMMD3|23412|COMM domain containing 3##AK313235|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##AY542159|COMMD3|23412|COMM domain containing 3##AK094582|LOC100130992|100130992|uncharacterized LOC100130992##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	1.440515	0.0	denovo_WM_7:-21:0.760	denovo_WM_7:23:0.325
chr1	51954061	51954228	reg1000156.p1	16.923	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-66378	-	AF007170 NM_001144832	-143406	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-157912	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	30779	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	30880	-	NM_024586 NM_148906 NM_148908 NM_148909	128401	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.998748	0.0	
chr10	123494160	123494284	reg1000213.p1	16.906	+	X52832 U11814 M87770 M87772 AB030073 AB030074 AB030075 AB030076 AB030077 AB030078 M80634 M87771 TSC_hg19_v1_chr10_-_123357946 M35718 M97193 BC096749 AK026508 BC039243 NM_000141 NM_001144917 NM_001144918 NM_001144919 NM_022970	-136464	-	AK294026 NM_001144915	-138064	-	AK308621 NM_001144916	-140451	-	TSC_hg19_v1_chr10_-_123687547 AK296356 AF079098 AF079099 AK303604 AK313057 BC022026 NM_001001976 NM_007041	193303	-	TSC_hg19_v1_chr10_-_123687979 AK299101 AK308926	193778	-	TSC_hg19_v1_chr10_-_123734310 AK301658 AK056579	240092	-	X52832|FGFR2|2263|fibroblast growth factor receptor 2##U11814|FGFR2|2263|fibroblast growth factor receptor 2##M87770|FGFR2|2263|fibroblast growth factor receptor 2##M87772|FGFR2|2263|fibroblast growth factor receptor 2##AB030073|FGFR2|2263|fibroblast growth factor receptor 2##AB030074|FGFR2|2263|fibroblast growth factor receptor 2##AB030075|FGFR2|2263|fibroblast growth factor receptor 2##AB030076|FGFR2|2263|fibroblast growth factor receptor 2##AB030077|FGFR2|2263|fibroblast growth factor receptor 2##AB030078|FGFR2|2263|fibroblast growth factor receptor 2##M80634|FGFR2|2263|fibroblast growth factor receptor 2##M87771|FGFR2|2263|fibroblast growth factor receptor 2##M97193|FGFR2|2263|fibroblast growth factor receptor 2##BC096749|FGFR2|2263|fibroblast growth factor receptor 2##AK026508|FGFR2|2263|fibroblast growth factor receptor 2##BC039243|FGFR2|2263|fibroblast growth factor receptor 2##NM_000141|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144917|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144918|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144919|FGFR2|2263|fibroblast growth factor receptor 2##NM_022970|FGFR2|2263|fibroblast growth factor receptor 2##AK294026|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144915|FGFR2|2263|fibroblast growth factor receptor 2##AK308621|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144916|FGFR2|2263|fibroblast growth factor receptor 2##AK296356|ATE1|11101|arginyltransferase 1##AF079098|ATE1|11101|arginyltransferase 1##AF079099|ATE1|11101|arginyltransferase 1##AK303604|ATE1|11101|arginyltransferase 1##AK313057|ATE1|11101|arginyltransferase 1##BC022026|ATE1|11101|arginyltransferase 1##NM_001001976|ATE1|11101|arginyltransferase 1##NM_007041|ATE1|11101|arginyltransferase 1##AK299101|ATE1|11101|arginyltransferase 1##AK308926|ATE1|11101|arginyltransferase 1##AK301658|NSMCE4A|54780|non-SMC element 4 homolog A (S. cerevisiae)##AK056579|NSMCE4A|54780|non-SMC element 4 homolog A (S. cerevisiae)	0.999772	0.991667	CTCF.p2:12:0.992	denovo_WM_7:-17:0.230	denovo_WM_7:-18:0.230	denovo_WM_7:-19:0.230	denovo_WM_7:-20:0.230
chr10	7914088	7914216	reg1000157.p1	16.894	+	AJ292190 NM_031923 AL117661	-53444	+	TSC_hg19_v1_chr10_+_7860467 BC105593 BC073884 BC017320 BC045106 AK307657 AK307521 BC062352 BC028077	-53676	+	TSC_hg19_v1_chr10_+_7830141 NM_001001973 NM_005174 BC000931 BC020824 AK292896 AK296803 D16562 D16563 BC016812 AK294061 BC010380 BC000470 BC013394 BC013865 CU677727 CR457403 BC026049	-84012	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	182497	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	182623	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	183331	+	AJ292190|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##NM_031923|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AL117661|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC105593|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC073884|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC017320|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC045106|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AK307657|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AK307521|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC062352|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC028077|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##NM_001001973|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##NM_005174|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC000931|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC020824|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK292896|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK296803|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##D16562|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##D16563|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC016812|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK294061|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC010380|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC000470|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC013394|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC013865|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##CR457403|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC026049|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3	1.359275	0.997558	CTCF.p2:-12:0.998	denovo_WM_7:-47:0.326
chr1	200594608	200594777	reg1000190.p1	16.887	+	TSC_hg19_v1_chr1_-_200589869 D26361 NM_014875	-4813	-	BC060820 NM_012482 TSC_hg19_v1_chr1_-_200379187 AK027284	-215498	-	TSC_hg19_v1_chr1_-_200379155 AK297233 AK022916 AK094701	-215575	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	44337	-	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	44416	-	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	113979	+	D26361|KIF14|9928|kinesin family member 14##NM_014875|KIF14|9928|kinesin family member 14##BC060820|ZNF281|23528|zinc finger protein 281##NM_012482|ZNF281|23528|zinc finger protein 281##AK027284|ZNF281|23528|zinc finger protein 281##AK297233|ZNF281|23528|zinc finger protein 281##AK022916|ZNF281|23528|zinc finger protein 281##AK094701|ZNF281|23528|zinc finger protein 281##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2	2.936455	0.0	denovo_WM_7:-12:0.802	denovo_WM_7:-27:0.791	denovo_WM_7:74:0.415	denovo_WM_7:75:0.415
chr4	36843695	36843838	reg1000171.p1	16.857	+	BC157885 NM_001170700	-558123	+	AK131492 NM_001136536 AK304357 AK316523	-560520	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	-597729	-	NM_001144990	402923	+	NM_001104629 BC037906	611809	+	AK001879 NM_018302 AK225192	742103	+	BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_001144990|KIAA1239|57495|KIAA1239##NM_001104629|C4orf19|55286|chromosome 4 open reading frame 19##BC037906|C4orf19|55286|chromosome 4 open reading frame 19##AK001879|C4orf19|55286|chromosome 4 open reading frame 19##NM_018302|C4orf19|55286|chromosome 4 open reading frame 19##AK225192|C4orf19|55286|chromosome 4 open reading frame 19	0.990553	0.0	
chrX	48489909	48490044	reg1000195.p1	16.857	+	TSC_hg19_v1_chrX_+_48456558 DQ907254 DQ907255	-33395	+	TSC_hg19_v1_chrX_+_48456231 NM_001166426 AB529059 EU832660 EU832738	-33674	+	TSC_hg19_v1_chrX_+_48456189 BC080579 AF158978 BC067094	-33810	+	TSC_hg19_v1_chrX_+_48542182 NM_000377	52198	+	TSC_hg19_v1_chrX_+_48542206 BC002961 U12707 BC012738 U19927 EU176449 AB590224	52247	+	TSC_hg19_v1_chrX_+_48555124 AF019968 NM_003173 BC006238	65152	+	DQ907254|WDR13|64743|WD repeat domain 13##DQ907255|WDR13|64743|WD repeat domain 13##NM_001166426|WDR13|64743|WD repeat domain 13##EU832660|WDR13|64743|WD repeat domain 13##EU832738|WDR13|64743|WD repeat domain 13##BC080579|WDR13|64743|WD repeat domain 13##AF158978|WDR13|64743|WD repeat domain 13##BC067094|WDR13|64743|WD repeat domain 13##NM_000377|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##BC002961|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##U12707|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##BC012738|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##U19927|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##EU176449|WAS|7454|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)##AF019968|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##NM_003173|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)##BC006238|SUV39H1|6839|suppressor of variegation 3-9 homolog 1 (Drosophila)	0.0	0.0	
chr18	39534909	39535061	reg1000162.p2	16.854	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2154717	-	TSC_hg19_v1_chr18_-_36915657 D28405	-2619329	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-4388986	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	214	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	248	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1160584	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.996726	0.0	denovo_WM_7:-10:0.527	denovo_WM_7:-11:0.470
chr17	77720059	77720162	reg1000124.p2	16.850	+	AY230663 BC041453 NM_178543 AY358622	-15221	+	NM_001082575	-241548	-	TSC_hg19_v1_chr17_+_77071020 AK025518 NM_001042573 AK301115 AF512564	-649080	+	TSC_hg19_v1_chr17_+_77751988 AX721084 AX721090 NM_005189 NM_032647 BC004252 BC119759 BC119760 AB463499 CU678640 EU446542	31871	+	TSC_hg19_v1_chr17_-_77770845 AB384672 CU679333 EU446831 BC008937 BC019289 AF266479 BC009376 AF174482 AK074560 NM_020649	50797	-	AY390430 CU677141 AB463501 BC014967 TSC_hg19_v1_chr17_-_77813168 NM_003655 EU439707 AF013956	93032	-	AY230663|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##BC041453|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##NM_178543|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##AY358622|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##NM_001082575|RBFOX3|146713|RNA binding protein, fox-1 homolog (C. elegans) 3##AK025518|ENGASE|64772|endo-beta-N-acetylglucosaminidase##NM_001042573|ENGASE|64772|endo-beta-N-acetylglucosaminidase##AK301115|ENGASE|64772|endo-beta-N-acetylglucosaminidase##AF512564|ENGASE|64772|endo-beta-N-acetylglucosaminidase##NM_005189|CBX2|84733|chromobox homolog 2##NM_032647|CBX2|84733|chromobox homolog 2##BC004252|CBX2|84733|chromobox homolog 2##BC119759|CBX2|84733|chromobox homolog 2##BC119760|CBX2|84733|chromobox homolog 2##EU446542|CBX2|84733|chromobox homolog 2##EU446831|CBX8|57332|chromobox homolog 8##BC008937|CBX8|57332|chromobox homolog 8##BC019289|CBX8|57332|chromobox homolog 8##AF266479|CBX8|57332|chromobox homolog 8##BC009376|CBX8|57332|chromobox homolog 8##AF174482|CBX8|57332|chromobox homolog 8##AK074560|CBX8|57332|chromobox homolog 8##NM_020649|CBX8|57332|chromobox homolog 8##AY390430|CBX4|8535|chromobox homolog 4##BC014967|CBX4|8535|chromobox homolog 4##NM_003655|CBX4|8535|chromobox homolog 4##EU439707|CBX4|8535|chromobox homolog 4##AF013956|CBX4|8535|chromobox homolog 4	2.903316	0.30506	CTCF.p2:14:0.264	denovo_WM_7:-77:0.660	denovo_WM_7:-78:0.251	denovo_WM_7:-92:0.421	denovo_WM_7:-93:0.447
chr7	66949353	66949484	reg1000178.p1	16.829	+	TSC_hg19_v1_chr7_+_66767656 BC026058	-181761	+	TSC_hg19_v1_chr7_+_66767642 AK307290	-181770	+	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	-181810	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	2114418	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	2114911	+	TSC_hg19_v1_chr7_+_69064580 BC011643	2115170	+	BC026058|STAG3L4|64940|stromal antigen 3-like 4##AK307290|STAG3L4|64940|stromal antigen 3-like 4##AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##BC011643|AUTS2|26053|autism susceptibility candidate 2	0.999676	0.777617	CTCF.p2:-12:0.778
chr7	76742172	76742309	reg1000181.p1	16.807	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-485693	-	TSC_hg19_v1_chr7_-_76256148 BC017101	-486037	-	TSC_hg19_v1_chr7_+_76178675 BC078169	-563565	+	BC036053 NM_020879 BX649000 AK292491 HM370402	9706	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	86896	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	303478	-	BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC017101|POMZP3|22932|POM121 and ZP3 fusion##BC078169|LOC100133091|100133091|uncharacterized LOC100133091##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)	0.999938	0.99596	CTCF.p2:24:0.996
chr2	99453637	99453770	reg1000146.p1	16.787	+	NM_012214 TSC_hg19_v1_chr2_-_99347596	-106090	-	TSC_hg19_v1_chr2_-_99347557 AK314024	-106207	-	AK304393 AK309852 NM_001160154	-173768	-	BC068277 NM_207362	98977	-	BC028366 NM_182911	304332	-	AK126402 AK314133 BC021264 NM_144706	304362	+	NM_012214|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK314024|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK304393|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK309852|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##NM_001160154|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##BC068277|C2orf55|343990|chromosome 2 open reading frame 55##NM_207362|C2orf55|343990|chromosome 2 open reading frame 55##BC028366|TSGA10|80705|testis specific, 10##NM_182911|TSGA10|80705|testis specific, 10##AK314133|C2orf15|150590|chromosome 2 open reading frame 15##BC021264|C2orf15|150590|chromosome 2 open reading frame 15##NM_144706|C2orf15|150590|chromosome 2 open reading frame 15	0.997707	0.973804	CTCF.p2:21:0.974	denovo_WM_7:-23:0.234	denovo_WM_7:-24:0.234	denovo_WM_7:-25:0.234	denovo_WM_7:-26:0.234
chr7	22563688	22563807	reg1000216.p1	16.781	+	BC066301 TSC_hg19_v1_chr7_-_22539806 AK308991 NM_001164460 NM_207342	-23900	-	AL833195 NM_012294	-167226	-	AB463479 AY161168 AY161169 CU691768 CU692942 BC009352 TSC_hg19_v1_chr7_-_21985500 AK095965 BC025242 BC032576 AK300781 BC039823 AK022955 AK292490 NM_001127370 NM_001127371 NM_018719	-578265	-	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	203076	+	TSC_hg19_v1_chr7_+_22767104 X04403	203371	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	298696	-	BC066301|STEAP1B|256227|STEAP family member 1B##AK308991|STEAP1B|256227|STEAP family member 1B##NM_001164460|STEAP1B|256227|STEAP family member 1B##NM_207342|STEAP1B|256227|STEAP family member 1B##AL833195|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##NM_012294|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##AY161168|CDCA7L|55536|cell division cycle associated 7-like##AY161169|CDCA7L|55536|cell division cycle associated 7-like##BC009352|CDCA7L|55536|cell division cycle associated 7-like##AK095965|CDCA7L|55536|cell division cycle associated 7-like##BC025242|CDCA7L|55536|cell division cycle associated 7-like##BC032576|CDCA7L|55536|cell division cycle associated 7-like##AK300781|CDCA7L|55536|cell division cycle associated 7-like##BC039823|CDCA7L|55536|cell division cycle associated 7-like##AK022955|CDCA7L|55536|cell division cycle associated 7-like##AK292490|CDCA7L|55536|cell division cycle associated 7-like##NM_001127370|CDCA7L|55536|cell division cycle associated 7-like##NM_001127371|CDCA7L|55536|cell division cycle associated 7-like##NM_018719|CDCA7L|55536|cell division cycle associated 7-like##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)	0.987698	0.999248	denovo_WM_7:23:0.472	denovo_WM_7:24:0.472	CTCF.p2:-28:0.999
chr11	67141092	67141234	reg1000229.p1	16.780	+	DQ891525 DQ894715 AB528390 AY049779 BC066229 BC066230 BC066231 AF172854 BC012939 AF176911 NM_013246	-57	-	AF179890 BC001334 TSC_hg19_v1_chr11_-_67121006 BC070250 AB209274 NM_021173	-20159	-	AK096155 TSC_hg19_v1_chr11_+_67085309	-55849	+	AK298052 NM_001166212	484	-	TSC_hg19_v1_chr11_+_67159464 BC014848 NM_004584 U53174 AK315348 CR536508	18305	+	NM_001243224	19612	+	DQ891525|CLCF1|23529|cardiotrophin-like cytokine factor 1##DQ894715|CLCF1|23529|cardiotrophin-like cytokine factor 1##AY049779|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066229|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066230|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066231|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF172854|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC012939|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF176911|CLCF1|23529|cardiotrophin-like cytokine factor 1##NM_013246|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF179890|POLD4|57804|polymerase (DNA-directed), delta 4##BC001334|POLD4|57804|polymerase (DNA-directed), delta 4##BC070250|POLD4|57804|polymerase (DNA-directed), delta 4##AB209274|POLD4|57804|polymerase (DNA-directed), delta 4##NM_021173|POLD4|57804|polymerase (DNA-directed), delta 4##AK096155|LOC100130987|100130987|uncharacterized LOC100130987##AK298052|CLCF1|23529|cardiotrophin-like cytokine factor 1##NM_001166212|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC014848|RAD9A|5883|RAD9 homolog A (S. pombe)##NM_004584|RAD9A|5883|RAD9 homolog A (S. pombe)##U53174|RAD9A|5883|RAD9 homolog A (S. pombe)##AK315348|RAD9A|5883|RAD9 homolog A (S. pombe)##CR536508|RAD9A|5883|RAD9 homolog A (S. pombe)##NM_001243224|RAD9A|5883|RAD9 homolog A (S. pombe)	1.998288	0.0	denovo_WM_7:-6:0.765	denovo_WM_7:-7:0.234	denovo_WM_7:29:0.783
chr7	17022324	17022493	reg1000121.p2	16.778	+	AY359065 BC058284 NM_176813	-100804	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-177737	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-228952	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	315861	+	TSC_hg19_v1_chr7_+_17382906 BC021696	360498	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	957641	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	1.087578	0.849755	CTCF.p2:25:0.850
chr12	112383174	112383281	reg1000155.p1	16.775	+	NM_003668 NM_139078 BC047284	-102907	+	BC041049 TSC_hg19_v1_chr12_+_112280044	-103154	+	AK122767 TSC_hg19_v1_chr12_+_112280039	-103315	+	BC048796 BC070135 AK074648 TSC_hg19_v1_chr12_-_112450970 AL833501 BC000282 AK092832 AX747754 NM_001193453 NM_001193531 NM_138341	67741	-	NM_001034025 NM_006817 TSC_hg19_v1_chr12_+_112451212 BC101493 BC101495	67959	+	TSC_hg19_v1_chr12_+_112451229 AK309426	68003	+	NM_003668|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##NM_139078|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC047284|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC041049|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##AK122767|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC048796|TMEM116|89894|transmembrane protein 116##BC070135|TMEM116|89894|transmembrane protein 116##AK074648|TMEM116|89894|transmembrane protein 116##AL833501|TMEM116|89894|transmembrane protein 116##BC000282|TMEM116|89894|transmembrane protein 116##AK092832|LOC728543|728543|uncharacterized LOC728543##NM_001193453|TMEM116|89894|transmembrane protein 116##NM_001193531|TMEM116|89894|transmembrane protein 116##NM_138341|TMEM116|89894|transmembrane protein 116##NM_001034025|ERP29|10961|endoplasmic reticulum protein 29##NM_006817|ERP29|10961|endoplasmic reticulum protein 29##BC101493|ERP29|10961|endoplasmic reticulum protein 29##BC101495|ERP29|10961|endoplasmic reticulum protein 29	1.903952	0.911354	CTCF.p2:-18:0.911	denovo_WM_7:-55:0.854	denovo_WM_7:-70:0.433	denovo_WM_7:-71:0.518
chr2	74413126	74413306	reg1000184.p2	16.739	+	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	-7309	-	AL122062 TSC_hg19_v1_chr2_-_74382411	-30835	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-37996	+	AK057260 TSC_hg19_v1_chr2_-_74425749	12499	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	12521	+	AF243499 AF293338 NM_021196	128934	-	AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AF243499|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##AF293338|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##NM_021196|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5	0.864013	0.0	
chr21	30848938	30849060	reg1000163.p1	16.731	+	AF026199 NM_206866	-177263	+	TSC_hg19_v1_chr21_+_30671242 AK313791 BC063307	-177758	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	-177779	+	L19058 NM_000830 NM_175611 AK296404 BC028238	463290	-	BC101503 BC101505 NM_012131 AY358094	690007	-	AB590283 CU676754 DQ892002 DQ895192 BC058004 AY358707 BC020866 AK223512 AK022269 NM_199328	739356	-	AF026199|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_206866|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AK313791|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##BC063307|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##L19058|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_000830|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_175611|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##AK296404|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC028238|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC101503|CLDN17|26285|claudin 17##BC101505|CLDN17|26285|claudin 17##NM_012131|CLDN17|26285|claudin 17##AY358094|CLDN17|26285|claudin 17##DQ892002|CLDN8|9073|claudin 8##DQ895192|CLDN8|9073|claudin 8##BC058004|CLDN8|9073|claudin 8##AY358707|CLDN8|9073|claudin 8##BC020866|CLDN8|9073|claudin 8##AK223512|CLDN8|9073|claudin 8##AK022269|CLDN8|9073|claudin 8##NM_199328|CLDN8|9073|claudin 8	1.360327	0.951367	denovo_WM_7:29:0.330	denovo_WM_7:30:0.330	denovo_WM_7:31:0.330	CTCF.p2:-50:0.951	denovo_WM_7:-93:0.369
chr1	226548140	226548285	reg1000186.p1	16.698	+	TSC_hg19_v1_chr1_-_226497442 AY166859 BC065302 AY166858	-50720	-	BC045625 NM_173083	-51015	-	TSC_hg19_v1_chr1_-_226496839 AY786184 BC043444 BX537869 AK126177 AF190323 AF190324 AK308823	-51316	-	TSC_hg19_v1_chr1_-_226595655 DQ891636 DQ894826 BC021045	47394	-	TSC_hg19_v1_chr1_-_226595717 AK312339 J03473	47493	-	TSC_hg19_v1_chr1_-_226595759 M18112 BC018620 AK225654	47543	-	AY166859|LIN9|286826|lin-9 homolog (C. elegans)##BC065302|LIN9|286826|lin-9 homolog (C. elegans)##AY166858|LIN9|286826|lin-9 homolog (C. elegans)##BC045625|LIN9|286826|lin-9 homolog (C. elegans)##NM_173083|LIN9|286826|lin-9 homolog (C. elegans)##AY786184|LIN9|286826|lin-9 homolog (C. elegans)##BC043444|LIN9|286826|lin-9 homolog (C. elegans)##BX537869|LIN9|286826|lin-9 homolog (C. elegans)##AK126177|LIN9|286826|lin-9 homolog (C. elegans)##AF190323|LIN9|286826|lin-9 homolog (C. elegans)##AF190324|LIN9|286826|lin-9 homolog (C. elegans)##AK308823|LIN9|286826|lin-9 homolog (C. elegans)##DQ891636|PARP1|142|poly (ADP-ribose) polymerase 1##DQ894826|PARP1|142|poly (ADP-ribose) polymerase 1##BC021045|PARP1|142|poly (ADP-ribose) polymerase 1##AK312339|PARP1|142|poly (ADP-ribose) polymerase 1##J03473|PARP1|142|poly (ADP-ribose) polymerase 1##M18112|PARP1|142|poly (ADP-ribose) polymerase 1##BC018620|PARP1|142|poly (ADP-ribose) polymerase 1##AK225654|PARP1|142|poly (ADP-ribose) polymerase 1	0.995606	0.0	denovo_WM_7:-21:0.940
chr12	6667286	6667411	reg1000209.p1	16.681	+	TSC_hg19_v1_chr12_-_6665250 BC001790 BC010431 BC023664 BC110387 NM_001039670 NM_001193457 NM_080730	-2090	-	M36164 TSC_hg19_v1_chr12_+_6647482	-19931	+	TSC_hg19_v1_chr12_+_6643982 M17851 AY633612 BC023632 DQ891557 DQ894744 AB463693 CU679249 J02642 BT006893 CR407671	-23366	+	TSC_hg19_v1_chr12_-_6677453 BC000656 BC065257 AK129852 BC106072 BC082985 BC128183 BC128184 AK056208 AK307582 NM_001033714 NM_006170	10118	-	CR936680 EU446505 TSC_hg19_v1_chr12_-_6715604	48220	-	X86691 TSC_hg19_v1_chr12_-_6716523 BC014964 BC025962 BC038596	49153	-	BC001790|IFFO1|25900|intermediate filament family orphan 1##BC010431|IFFO1|25900|intermediate filament family orphan 1##BC023664|IFFO1|25900|intermediate filament family orphan 1##BC110387|IFFO1|25900|intermediate filament family orphan 1##NM_001039670|IFFO1|25900|intermediate filament family orphan 1##NM_001193457|IFFO1|25900|intermediate filament family orphan 1##NM_080730|IFFO1|25900|intermediate filament family orphan 1##M36164|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M17851|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY633612|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC023632|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ891557|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ894744|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##J02642|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BT006893|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##CR407671|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC000656|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC065257|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK129852|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC106072|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC082985|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC128183|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC128184|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK056208|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK307582|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##NM_001033714|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##NM_006170|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##CR936680|CHD4|1108|chromodomain helicase DNA binding protein 4##EU446505|CHD4|1108|chromodomain helicase DNA binding protein 4##X86691|CHD4|1108|chromodomain helicase DNA binding protein 4##BC014964|CHD4|1108|chromodomain helicase DNA binding protein 4##BC025962|CHD4|1108|chromodomain helicase DNA binding protein 4##BC038596|CHD4|1108|chromodomain helicase DNA binding protein 4	1.995842	0.770792	CTCF.p2:32:0.771	denovo_WM_7:97:0.691
chr11	63633791	63633930	reg1000174.p1	16.670	+	TSC_hg19_v1_chr11_+_63606599 AK307858	-27256	+	TSC_hg19_v1_chr11_+_63606564 AK225766	-27311	+	TSC_hg19_v1_chr11_+_63606486 AB188493 NM_001039469 NM_001163296 NM_001163297 NM_004954	-27434	+	NM_017490 AK290339 TSC_hg19_v1_chr11_+_63656059 X97630 AY562188	22216	+	BC023587 NM_173587	50455	-	TSC_hg19_v1_chr11_-_63684632 AB593132	50779	-	AK307858|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK225766|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AB188493|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001039469|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163296|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163297|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_004954|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_017490|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK290339|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##X97630|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AY562188|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##AB593132|RCOR2|283248|REST corepressor 2	0.999297	0.0	
chr7	969736	969912	reg1000185.p2	16.660	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	-9310	-	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	-53554	+	TSC_hg19_v1_chr7_+_916188 NM_015949	-53621	+	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	24291	-	TSC_hg19_v1_chr7_-_994317 NM_006869	24489	-	TSC_hg19_v1_chr7_-_994377 AJ006422	24639	-	AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1##BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1	0.99831	0.0	
chr3	50384725	50384872	reg1000145.p1	16.650	+	AB464423 AM392817 AM393187 CU689716 BC033732 TSC_hg19_v1_chr3_-_50383103 AK223343 AL833828 AK058135 AK308086 U70824 U70880 BC022186 NM_015896 AK315123	-1706	-	AB528642 AK300994 AF102770 AF102771 AF102772 AF286217 AF291719 AF132675 TSC_hg19_v1_chr3_-_50378282 BC117153 BC143879 NM_001206957 NM_007182 NM_170714	-6496	-	AF132677 BC110412 NM_170712 AK310032	-9115	-	HQ257917 AF040707 AF040708 AK292196 TSC_hg19_v1_chr3_-_50388213 BC002791 BC056861 AK309658 AL833426 BC050412 BC063030 BC021984	3366	-	TSC_hg19_v1_chr3_+_50388322 BX641103 BC047691 NM_007022 AF040704 AK291167	3497	+	BC008802 NM_006545	3687	-	AM392817|ZMYND10|51364|zinc finger, MYND-type containing 10##AM393187|ZMYND10|51364|zinc finger, MYND-type containing 10##BC033732|ZMYND10|51364|zinc finger, MYND-type containing 10##AK223343|ZMYND10|51364|zinc finger, MYND-type containing 10##AL833828|ZMYND10|51364|zinc finger, MYND-type containing 10##AK058135|ZMYND10|51364|zinc finger, MYND-type containing 10##AK308086|ZMYND10|51364|zinc finger, MYND-type containing 10##U70824|ZMYND10|51364|zinc finger, MYND-type containing 10##U70880|ZMYND10|51364|zinc finger, MYND-type containing 10##BC022186|ZMYND10|51364|zinc finger, MYND-type containing 10##NM_015896|ZMYND10|51364|zinc finger, MYND-type containing 10##AK315123|ZMYND10|51364|zinc finger, MYND-type containing 10##AK300994|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF102770|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF102771|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF102772|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF286217|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF291719|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF132675|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##BC117153|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##BC143879|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_001206957|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_007182|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_170714|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF132677|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##BC110412|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_170712|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF040707|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AF040708|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AK292196|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC056861|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AK309658|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AL833426|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC050412|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC063030|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC021984|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BX641103|CYB561D2|11068|cytochrome b-561 domain containing 2##BC047691|CYB561D2|11068|cytochrome b-561 domain containing 2##NM_007022|CYB561D2|11068|cytochrome b-561 domain containing 2##AF040704|CYB561D2|11068|cytochrome b-561 domain containing 2##AK291167|CYB561D2|11068|cytochrome b-561 domain containing 2##BC008802|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##NM_006545|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)	1.670635	0.968091	denovo_WM_7:-15:0.596	denovo_WM_7:-30:0.611	CTCF.p2:36:0.968
chr5	64920474	64920635	reg1000165.p1	16.618	+	TSC_hg19_v1_chr5_-_64920151 NM_001656 NM_033227 NM_033228	-387	-	AB384982 CU692664 DQ893646 DQ895584 TSC_hg19_v1_chr5_-_64920148 AF230397 AF230398 AF230399 L04510 BC022510 AK292814	-430	-	TSC_hg19_v1_chr5_+_64859122 AK025679 AK093675 AK300022 AK298175 AK301654 NM_015342 BC015385 AB384434 CU677289 GQ129262 GQ129263 D38552	-61436	+	NM_001093755 NM_001093756 NM_001243737 NM_024941	3	+	BX641157 BC012006 TSC_hg19_v1_chr5_+_64920864 AK023673 BC142994	296	+	TSC_hg19_v1_chr5_-_65017944 AK096321 BC012044 AF368281 NM_019072	97368	-	NM_001656|TRIM23|373|tripartite motif containing 23##NM_033227|TRIM23|373|tripartite motif containing 23##NM_033228|TRIM23|373|tripartite motif containing 23##DQ893646|TRIM23|373|tripartite motif containing 23##DQ895584|TRIM23|373|tripartite motif containing 23##AF230397|TRIM23|373|tripartite motif containing 23##AF230398|TRIM23|373|tripartite motif containing 23##AF230399|TRIM23|373|tripartite motif containing 23##L04510|TRIM23|373|tripartite motif containing 23##BC022510|TRIM23|373|tripartite motif containing 23##AK292814|TRIM23|373|tripartite motif containing 23##AK025679|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK300022|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK298175|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK301654|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##NM_015342|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##BC015385|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129262|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129263|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##D38552|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##NM_001093755|C5orf44|80006|chromosome 5 open reading frame 44##NM_001093756|C5orf44|80006|chromosome 5 open reading frame 44##NM_001243737|C5orf44|80006|chromosome 5 open reading frame 44##NM_024941|C5orf44|80006|chromosome 5 open reading frame 44##BX641157|C5orf44|80006|chromosome 5 open reading frame 44##BC012006|C5orf44|80006|chromosome 5 open reading frame 44##AK023673|C5orf44|80006|chromosome 5 open reading frame 44##BC142994|C5orf44|80006|chromosome 5 open reading frame 44##AK096321|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##BC012044|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##AF368281|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##NM_019072|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	1.018362	0.0	
chr1	45860251	45860431	reg1000159.p4	16.611	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-54441	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-54468	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-54512	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	96492	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	105598	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	127237	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	1.993193	0.0	denovo_WM_7:17:0.469	denovo_WM_7:18:0.359	denovo_WM_7:32:0.480	denovo_WM_7:33:0.438
chr11	86002933	86003075	reg1000169.p2	16.599	+	TSC_hg19_v1_chr11_+_85956277 BC068995 AK294133 CU686693 AB463023 EU446743 AF078933 AK301265 BC047672	-46718	+	AF099032 U90651 TSC_hg19_v1_chr11_+_85956254	-46787	+	AF070418 TSC_hg19_v1_chr11_+_85956058	-46955	+	NM_016401 TSC_hg19_v1_chr11_+_86013281 AF161487 AF161527 AK001447 AK223198 BC015991 BC021621 AK298763 BC018080 BC001677 BC006476 DQ892731 DQ895977 CU674828 CU676162	10365	+	AK131331 NM_001156474 NM_021827	82773	+	TSC_hg19_v1_chr11_-_86383218 BC022472 NM_001014811 AK092181	380201	-	BC068995|EED|8726|embryonic ectoderm development##AK294133|EED|8726|embryonic ectoderm development##EU446743|EED|8726|embryonic ectoderm development##AF078933|EED|8726|embryonic ectoderm development##AK301265|EED|8726|embryonic ectoderm development##BC047672|EED|8726|embryonic ectoderm development##AF099032|EED|8726|embryonic ectoderm development##U90651|EED|8726|embryonic ectoderm development##AF070418|EED|8726|embryonic ectoderm development##NM_016401|C11orf73|51501|chromosome 11 open reading frame 73##AF161487|C11orf73|51501|chromosome 11 open reading frame 73##AF161527|C11orf73|51501|chromosome 11 open reading frame 73##AK001447|C11orf73|51501|chromosome 11 open reading frame 73##AK223198|C11orf73|51501|chromosome 11 open reading frame 73##BC015991|C11orf73|51501|chromosome 11 open reading frame 73##BC021621|C11orf73|51501|chromosome 11 open reading frame 73##AK298763|C11orf73|51501|chromosome 11 open reading frame 73##BC018080|C11orf73|51501|chromosome 11 open reading frame 73##BC001677|C11orf73|51501|chromosome 11 open reading frame 73##BC006476|C11orf73|51501|chromosome 11 open reading frame 73##DQ892731|C11orf73|51501|chromosome 11 open reading frame 73##DQ895977|C11orf73|51501|chromosome 11 open reading frame 73##AK131331|CCDC81|60494|coiled-coil domain containing 81##NM_001156474|CCDC81|60494|coiled-coil domain containing 81##NM_021827|CCDC81|60494|coiled-coil domain containing 81##BC022472|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##NM_001014811|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##AK092181|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial	1.978565	0.92048	CTCF.p2:22:0.920	denovo_WM_7:-32:0.533	denovo_WM_7:-47:0.380	denovo_WM_7:-48:0.347
chr20	25299252	25299411	reg1000194.p2	16.597	+	TSC_hg19_v1_chr20_+_25228699 NM_002862 AK309036 AK299697 BC017045 J03544 BC030795 AB209080 U47025 DQ894674 EU176283	-70573	+	AK302395 AK297954 TSC_hg19_v1_chr20_+_25176475	-122851	+	TSC_hg19_v1_chr20_+_25176363 AK308626 NM_001114089 NM_001247 AK303786 CR936750 AK293256 AK128412 AK300028 AF039916 AK300514 CR936765 AL834158 BC025980 AY327581	-122961	+	CU680756 AK075023 AK290815 AK293495 TSC_hg19_v1_chr20_-_25371426	72054	-	TSC_hg19_v1_chr20_-_25371452 BC014049 NM_001042472 NM_015600	72195	-	BC012542 NM_021067 TSC_hg19_v1_chr20_+_25388323	88991	+	NM_002862|PYGB|5834|phosphorylase, glycogen; brain##AK309036|PYGB|5834|phosphorylase, glycogen; brain##AK299697|PYGB|5834|phosphorylase, glycogen; brain##BC017045|PYGB|5834|phosphorylase, glycogen; brain##J03544|PYGB|5834|phosphorylase, glycogen; brain##BC030795|PYGB|5834|phosphorylase, glycogen; brain##AB209080|PYGB|5834|phosphorylase, glycogen; brain##U47025|PYGB|5834|phosphorylase, glycogen; brain##DQ894674|PYGB|5834|phosphorylase, glycogen; brain##EU176283|PYGB|5834|phosphorylase, glycogen; brain##AK302395|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK297954|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK308626|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001114089|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001247|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK303786|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936750|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK293256|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK128412|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300028|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AF039916|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300514|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936765|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AL834158|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##BC025980|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AY327581|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK075023|ABHD12|26090|abhydrolase domain containing 12##AK290815|ABHD12|26090|abhydrolase domain containing 12##AK293495|ABHD12|26090|abhydrolase domain containing 12##BC014049|ABHD12|26090|abhydrolase domain containing 12##NM_001042472|ABHD12|26090|abhydrolase domain containing 12##NM_015600|ABHD12|26090|abhydrolase domain containing 12##BC012542|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)##NM_021067|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)	0.99983	0.0	denovo_WM_7:-22:0.419	denovo_WM_7:-23:0.419
chr6	161695077	161695224	reg1000260.p1	16.591	+	TSC_hg19_v1_chr6_-_161695027 AK295826 AF156776 AY358506 BC020209 AK295548 AK295025 CR627395 AJ420473 AK299721 AK074208 AK297636 NM_020133	-90	-	AK094629 TSC_hg19_v1_chr6_-_161413451	-281737	-	TSC_hg19_v1_chr6_+_161412887 BC136276 BC143735 BC143743 BC143750 AK307866	-282292	+	AK057286 NM_001080378 NM_152410 BC044227	1453019	+	GU345838 GU345839 GU345840 GU361466 GU361467 GU361468 GU361469 GU361470 TSC_hg19_v1_chr6_-_163148736	1453577	-	TSC_hg19_v1_chr6_-_163148797 AB245403 AK292590 BC022014	1453628	-	AK295826|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AF156776|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AY358506|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##BC020209|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK295548|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK295025|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##CR627395|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AJ420473|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK299721|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK074208|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK297636|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##NM_020133|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##BC136276|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143735|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143743|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143750|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AK307866|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AK057286|PACRG|135138|PARK2 co-regulated##NM_001080378|PACRG|135138|PARK2 co-regulated##NM_152410|PACRG|135138|PARK2 co-regulated##BC044227|PACRG|135138|PARK2 co-regulated##GU345838|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU345839|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU345840|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361466|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361467|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361468|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361469|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361470|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##AB245403|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##AK292590|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##BC022014|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)	0.999265	0.0	denovo_WM_7:-14:0.741
chr13	59161402	59161546	reg1000135.p1	16.587	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-953578	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-955527	+	NM_001040429	-955686	+	BC041395 TSC_hg19_v1_chr13_-_60325215	1163670	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	1425846	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	1576507	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	0.994907	0.0	denovo_WM_7:47:0.481	denovo_WM_7:48:0.343
chr16	4598863	4598985	reg1000253.p1	16.578	+	TSC_hg19_v1_chr16_-_4588775 BC002882 AK292036 AK302297 AL136698 AK294257 DQ167023 NM_001199055 NM_001199056 NM_013399 AK307067 AK308532	-10132	-	TSC_hg19_v1_chr16_-_4588442 AF195661 AL833853 NM_001199054	-10487	-	AK311295 BC007604 TSC_hg19_v1_chr16_-_4563123	-35873	-	NM_001145011	7566	+	TSC_hg19_v1_chr16_-_4664870 CU687554 AF370434 BC012018 AK055785 BC025327 BC008681	65910	-	TSC_hg19_v1_chr16_-_4664901 BC062534 NM_145253	66009	-	BC002882|C16orf5|29965|chromosome 16 open reading frame 5##AK292036|C16orf5|29965|chromosome 16 open reading frame 5##AK302297|C16orf5|29965|chromosome 16 open reading frame 5##AL136698|C16orf5|29965|chromosome 16 open reading frame 5##AK294257|C16orf5|29965|chromosome 16 open reading frame 5##DQ167023|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199055|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199056|C16orf5|29965|chromosome 16 open reading frame 5##NM_013399|C16orf5|29965|chromosome 16 open reading frame 5##AK307067|C16orf5|29965|chromosome 16 open reading frame 5##AK308532|C16orf5|29965|chromosome 16 open reading frame 5##AF195661|C16orf5|29965|chromosome 16 open reading frame 5##AL833853|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199054|C16orf5|29965|chromosome 16 open reading frame 5##AK311295|C16orf5|29965|chromosome 16 open reading frame 5##BC007604|C16orf5|29965|chromosome 16 open reading frame 5##NM_001145011|C16orf96|342346|chromosome 16 open reading frame 96##AF370434|FAM100A|124402|family with sequence similarity 100, member A##BC012018|FAM100A|124402|family with sequence similarity 100, member A##AK055785|FAM100A|124402|family with sequence similarity 100, member A##BC025327|FAM100A|124402|family with sequence similarity 100, member A##BC008681|FAM100A|124402|family with sequence similarity 100, member A##BC062534|FAM100A|124402|family with sequence similarity 100, member A##NM_145253|FAM100A|124402|family with sequence similarity 100, member A	0.994241	0.999103	CTCF.p2:11:0.999	denovo_WM_7:-38:0.779
chr4	46978305	46978475	reg1000217.p2	16.561	+	BC107855 BC035923 AX721204 NM_130902	-67153	-	AB209295 AK293466 S62907 TSC_hg19_v1_chr4_-_46391998 NM_000807	-586477	-	TSC_hg19_v1_chr4_-_46391484 AK307128	-586877	-	CU690038 DQ891679 DQ894864 EU176605 U30461 NM_001204266 NM_001204267 BC035055	17106	-	AK090780 NM_000809	18033	-	NM_000812 AK296023	54957	+	BC107855|COX7B2|170712|cytochrome c oxidase subunit VIIb2##BC035923|COX7B2|170712|cytochrome c oxidase subunit VIIb2##NM_130902|COX7B2|170712|cytochrome c oxidase subunit VIIb2##AB209295|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##AK293466|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##S62907|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##NM_000807|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##AK307128|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##DQ891679|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ894864|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##EU176605|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##U30461|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204266|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204267|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##BC035055|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##AK090780|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_000809|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_000812|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AK296023|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1	0.999674	0.0	
chr17	49128039	49128189	reg1000166.p2	16.554	+	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-3886	-	AK313904 NM_001243877	-182776	-	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	-184418	-	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	70041	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	102797	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	102818	+	BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	1.665448	0.0	denovo_WM_7:-23:0.964	denovo_WM_7:-88:0.666
chr17	77005904	77006033	reg1000177.p1	16.534	+	TSC_hg19_v1_chr17_-_77005876 AK074687 AB097006 AB097033 AF328554 AK295930 NM_001159772 NM_001159773 NM_138793	-89	-	TSC_hg19_v1_chr17_-_77005820 BC017655	-188	-	BC005104 TSC_hg19_v1_chr17_-_76989827	-16169	-	TSC_hg19_v1_chr17_+_77020250 NM_030968 NM_198594	14274	+	TSC_hg19_v1_chr17_+_77020308 AK055541	14342	+	AF329840 NM_198593 BC021553	24554	+	AK074687|CANT1|124583|calcium activated nucleotidase 1##AB097006|CANT1|124583|calcium activated nucleotidase 1##AB097033|CANT1|124583|calcium activated nucleotidase 1##AF328554|CANT1|124583|calcium activated nucleotidase 1##AK295930|CANT1|124583|calcium activated nucleotidase 1##NM_001159772|CANT1|124583|calcium activated nucleotidase 1##NM_001159773|CANT1|124583|calcium activated nucleotidase 1##NM_138793|CANT1|124583|calcium activated nucleotidase 1##BC017655|CANT1|124583|calcium activated nucleotidase 1##BC005104|CANT1|124583|calcium activated nucleotidase 1##NM_030968|C1QTNF1|114897|C1q and tumor necrosis factor related protein 1##NM_198594|C1QTNF1|114897|C1q and tumor necrosis factor related protein 1##AK055541|C1QTNF1|114897|C1q and tumor necrosis factor related protein 1##AF329840|C1QTNF1|114897|C1q and tumor necrosis factor related protein 1##NM_198593|C1QTNF1|114897|C1q and tumor necrosis factor related protein 1##BC021553|C1QTNF1|114897|C1q and tumor necrosis factor related protein 1	1.422239	0.0	denovo_WM_7:4:0.216	denovo_WM_7:20:0.209	denovo_WM_7:21:0.379
chrX	130965008	130965139	reg1000226.p1	16.499	+	TSC_hg19_v1_chrX_-_130964633 AK097911	-422	-	BC137050 AB529233 NM_001004486	-287075	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-541661	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	192248	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	192567	+	FJ717411 BC114371 AK125336 NM_194277	296887	-	AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4##FJ717411|FRMD7|90167|FERM domain containing 7##BC114371|FRMD7|90167|FERM domain containing 7##AK125336|FRMD7|90167|FERM domain containing 7##NM_194277|FRMD7|90167|FERM domain containing 7	0.0	0.010436	
chr19	12792737	12792854	reg1000204.p1	16.483	+	TSC_hg19_v1_chr19_-_12792699 AK300498 NM_001930 NM_013406	-82	-	TSC_hg19_v1_chr19_-_12792697 AK291553 AK304780	-109	-	TSC_hg19_v1_chr19_-_12792673 EU831477 EU831564 CU674162 U26266 U32178 AY336090 L39068 BC000333 U40579 BC014016 U79262	-169	-	AY736034 TSC_hg19_v1_chr19_-_12807434 BC004290 AK302744 AK123037 NM_032301	14629	-	TSC_hg19_v1_chr19_-_12833356 BC063679 BC072420 NM_013433 BC018314 AK299485	40353	-	NM_001136196 TSC_hg19_v1_chr19_-_12833473	40688	-	AK300498|DHPS|1725|deoxyhypusine synthase##NM_001930|DHPS|1725|deoxyhypusine synthase##NM_013406|DHPS|1725|deoxyhypusine synthase##AK291553|DHPS|1725|deoxyhypusine synthase##AK304780|DHPS|1725|deoxyhypusine synthase##EU831477|DHPS|1725|deoxyhypusine synthase##EU831564|DHPS|1725|deoxyhypusine synthase##U26266|DHPS|1725|deoxyhypusine synthase##U32178|DHPS|1725|deoxyhypusine synthase##AY336090|DHPS|1725|deoxyhypusine synthase##L39068|DHPS|1725|deoxyhypusine synthase##BC000333|DHPS|1725|deoxyhypusine synthase##U40579|DHPS|1725|deoxyhypusine synthase##BC014016|DHPS|1725|deoxyhypusine synthase##U79262|DHPS|1725|deoxyhypusine synthase##AY736034|FBXW9|84261|F-box and WD repeat domain containing 9##BC004290|FBXW9|84261|F-box and WD repeat domain containing 9##AK302744|FBXW9|84261|F-box and WD repeat domain containing 9##AK123037|FBXW9|84261|F-box and WD repeat domain containing 9##NM_032301|FBXW9|84261|F-box and WD repeat domain containing 9##BC063679|TNPO2|30000|transportin 2##BC072420|TNPO2|30000|transportin 2##NM_013433|TNPO2|30000|transportin 2##BC018314|TNPO2|30000|transportin 2##AK299485|TNPO2|30000|transportin 2##NM_001136196|TNPO2|30000|transportin 2	1.405116	0.0	denovo_WM_7:30:0.266	denovo_WM_7:46:0.207	denovo_WM_7:47:0.226
chr3	52287384	52287528	reg1000200.p1	16.443	+	AK056894 NM_001122870 BC009644	-7252	+	TSC_hg19_v1_chr3_+_52279770 NM_144641 AB474372 AK096681	-7629	+	TSC_hg19_v1_chr3_+_52273270 BC039681	-14193	+	BC018941 AK074290 TSC_hg19_v1_chr3_-_52294468	6991	-	TSC_hg19_v1_chr3_-_52312406 AB590669 AY358264 BX648628 AK291380	24934	-	TSC_hg19_v1_chr3_-_52312656 NM_025222	25200	-	AK056894|PPM1M|132160|protein phosphatase, Mg2+/Mn2+ dependent, 1M##NM_001122870|PPM1M|132160|protein phosphatase, Mg2+/Mn2+ dependent, 1M##BC009644|PPM1M|132160|protein phosphatase, Mg2+/Mn2+ dependent, 1M##NM_144641|PPM1M|132160|protein phosphatase, Mg2+/Mn2+ dependent, 1M##AB474372|PPM1M|132160|protein phosphatase, Mg2+/Mn2+ dependent, 1M##AK096681|PPM1M|132160|protein phosphatase, Mg2+/Mn2+ dependent, 1M##BC018941|WDR82|80335|WD repeat domain 82##AK074290|WDR82|80335|WD repeat domain 82##AY358264|WDR82|80335|WD repeat domain 82##BX648628|WDR82|80335|WD repeat domain 82##AK291380|WDR82|80335|WD repeat domain 82##NM_025222|WDR82|80335|WD repeat domain 82	0.998712	0.0	denovo_WM_7:4:0.952
chr19	2264516	2264637	reg1000223.p1	16.411	+	AK056978 NM_144616	-8158	-	NM_000479	-15464	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-27738	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	4944	+	TSC_hg19_v1_chr19_+_2269526 BC042364	4950	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	4966	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.998167	0.0	
chr19	11047453	11047556	reg1000191.p1	16.388	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-8047	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-8265	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-65068	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	24142	+	TSC_hg19_v1_chr19_+_11071717 BC007302	24211	+	TSC_hg19_v1_chr19_+_11071720 BC035916	24246	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.999508	0.954138	CTCF.p2:-4:0.954	denovo_WM_7:-47:0.425	denovo_WM_7:-48:0.425
chr8	7720660	7720802	reg1000265.p1	16.381	+	NM_001081552 NM_058203 AJ635328 AF168617 BC125141 BC058833 AF168618 AF168619 AJ628017	-15249	+	AJ314834 BC100848 BC100849 BC100850 BC100851 NM_001040702 NM_080389	-26739	+	BC100844 BC100845 BC100846 BC100847 BC110062 BC111688 NM_001040704 NM_152251 AB089181 AF529417 AF540978	-38036	+	AF301470 NM_001081551	17994	+	AF295370 AJ237673 NM_018661 AB037972 AB590071 AF217245 AF516673	18194	+	BC069285 NM_004942 BC093985 BC093983 Z71389	31473	+	NM_001081552|SPAG11A|653423|sperm associated antigen 11A##NM_058203|SPAG11B|10407|sperm associated antigen 11B##AJ635328|SPAG11B|10407|sperm associated antigen 11B##AF168617|SPAG11B|10407|sperm associated antigen 11B##BC125141|SPAG11A|653423|sperm associated antigen 11A##BC058833|SPAG11A|653423|sperm associated antigen 11A##AF168618|SPAG11A|653423|sperm associated antigen 11A##AF168619|SPAG11A|653423|sperm associated antigen 11A##AJ628017|SPAG11B|10407|sperm associated antigen 11B##AJ314834|DEFB104A|140596|defensin, beta 104A##BC100848|DEFB104A|140596|defensin, beta 104A##BC100849|DEFB104A|140596|defensin, beta 104A##BC100850|DEFB104A|140596|defensin, beta 104A##BC100851|DEFB104A|140596|defensin, beta 104A##NM_001040702|DEFB104B|503618|defensin, beta 104B##NM_080389|DEFB104A|140596|defensin, beta 104A##BC100844|DEFB106A|245909|defensin, beta 106A##BC100845|DEFB106A|245909|defensin, beta 106A##BC100846|DEFB106A|245909|defensin, beta 106A##BC100847|DEFB106A|245909|defensin, beta 106A##BC110062|DEFB106A|245909|defensin, beta 106A##BC111688|DEFB106A|245909|defensin, beta 106A##NM_001040704|DEFB106B|503841|defensin, beta 106B##NM_152251|DEFB106A|245909|defensin, beta 106A##AB089181|DEFB106A|245909|defensin, beta 106A##AF529417|DEFB106A|245909|defensin, beta 106A##AF540978|DEFB106A|245909|defensin, beta 106A##AF301470|DEFB103B|55894|defensin, beta 103B##NM_001081551|DEFB103A|414325|defensin, beta 103A##AF295370|DEFB103B|55894|defensin, beta 103B##AJ237673|DEFB103B|55894|defensin, beta 103B##NM_018661|DEFB103B|55894|defensin, beta 103B##AB037972|DEFB103B|55894|defensin, beta 103B##AF217245|DEFB103B|55894|defensin, beta 103B##AF516673|DEFB103B|55894|defensin, beta 103B##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A	1.988387	0.0	denovo_WM_7:12:0.330	denovo_WM_7:13:0.264	denovo_WM_7:30:0.265	denovo_WM_7:31:0.331
chr18	74204969	74205142	reg1000206.p2	16.370	+	BC108287 TSC_hg19_v1_chr18_-_74092260	-112805	-	BC105945 BC107486 NM_001037331 BC037871 AK093452 AX748136	-1065433	-	TSC_hg19_v1_chr18_+_72998258 AK223545 BC024152	-1206713	+	D86975 NM_014643 TSC_hg19_v1_chr18_-_74207166	2100	-	TSC_hg19_v1_chr18_-_74534239 BC032908	329184	-	TSC_hg19_v1_chr18_+_74534512 BX648028	329455	+	BC108287|ZNF516|9658|zinc finger protein 516##BC105945|C18orf62|284274|chromosome 18 open reading frame 62##BC107486|C18orf62|284274|chromosome 18 open reading frame 62##NM_001037331|C18orf62|284274|chromosome 18 open reading frame 62##BC037871|C18orf62|284274|chromosome 18 open reading frame 62##AK093452|C18orf62|284274|chromosome 18 open reading frame 62##AK223545|TSHZ1|10194|teashirt zinc finger homeobox 1##BC024152|TSHZ1|10194|teashirt zinc finger homeobox 1##D86975|ZNF516|9658|zinc finger protein 516##NM_014643|ZNF516|9658|zinc finger protein 516##BC032908|LOC100131655|100131655|uncharacterized LOC100131655##BX648028|ZNF236|7776|zinc finger protein 236	0.986312	0.0	denovo_WM_7:2:0.209	denovo_WM_7:4:0.586
chr17	46588537	46588685	reg1000302.p1	16.354	+	TSC_hg19_v1_chr17_-_46507604 BC039040	-80994	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	-81073	-	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-403459	+	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	19660	-	EU446481 BC074805 BC074806 X16665 NM_002145	33722	-	NM_002146 AK027609	63217	-	BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1##EU446481|HOXB2|3212|homeobox B2##BC074805|HOXB2|3212|homeobox B2##BC074806|HOXB2|3212|homeobox B2##X16665|HOXB2|3212|homeobox B2##NM_002145|HOXB2|3212|homeobox B2##NM_002146|HOXB3|3213|homeobox B3##AK027609|HOXB3|3213|homeobox B3	0.990899	0.0	denovo_WM_7:-16:0.237	denovo_WM_7:-17:0.237	denovo_WM_7:-18:0.237	denovo_WM_7:-19:0.237
chr2	62932523	62932688	reg1000199.p1	16.336	+	AK292545 NM_001142615	-31620	+	BC047439 AK091902 AX747245 NM_198276	-199066	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	-509339	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	361	+	BC029477 NM_001142614	1425	+	NM_001199770	344586	+	AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1##BC029477|EHBP1|23301|EH domain binding protein 1##NM_001142614|EHBP1|23301|EH domain binding protein 1##NM_001199770|OTX1|5013|orthodenticle homeobox 1	0.986475	0.0	denovo_WM_7:23:0.321	denovo_WM_7:24:0.344	denovo_WM_7:25:0.309
chr14	66826294	66826430	reg1000275.p1	16.334	+	TSC_hg19_v1_chr14_+_65879739 BC025385	-946637	+	TSC_hg19_v1_chr14_+_65879525 Y17978 Y17979	-946874	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	-947036	-	AB037806 AF272663 NM_001024218 NM_020806	147762	+	TSC_hg19_v1_chr14_+_66974859 AK025169	148491	+	TSC_hg19_v1_chr14_+_66974870 AK315569	148507	+	BC025385|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17978|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17979|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431##AB037806|GPHN|10243|gephyrin##AF272663|GPHN|10243|gephyrin##NM_001024218|GPHN|10243|gephyrin##NM_020806|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin	0.999432	0.957398	CTCF.p2:-25:0.957
chr6	150392391	150392516	reg1000272.p1	16.296	+	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	-2240	-	BC131600 AB528849 AY039682 NM_130900	-45820	-	AK292519 AK316582 TSC_hg19_v1_chr6_+_150285142 BC035416 NM_025218 AB052907 AF304377 AF346416 AF425265 AF346595	-107291	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	71788	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	297705	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	528567	+	AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AK292519|ULBP1|80329|UL16 binding protein 1##AK316582|ULBP1|80329|UL16 binding protein 1##BC035416|ULBP1|80329|UL16 binding protein 1##NM_025218|ULBP1|80329|UL16 binding protein 1##AB052907|ULBP1|80329|UL16 binding protein 1##AF304377|ULBP1|80329|UL16 binding protein 1##AF346416|ULBP1|80329|UL16 binding protein 1##AF425265|ULBP1|80329|UL16 binding protein 1##AF346595|ULBP1|80329|UL16 binding protein 1##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	0.997354	0.974129	CTCF.p2:-11:0.974	denovo_WM_7:19:0.976
chr8	37248102	37248214	reg1000210.p2	16.276	+	NM_001031836 AK302391 BC028701	-606288	+	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	-2155171	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-3790663	-	TSC_hg19_v1_chr8_-_37457377 AK025743	209210	-	TSC_hg19_v1_chr8_+_37553300 AK024361 NM_025069 BC032534	305159	+	TSC_hg19_v1_chr8_+_37594112 NM_001003791 NM_007175 AL442077	345948	+	NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK025743|LOC157860|157860|uncharacterized LOC157860##AK024361|ZNF703|80139|zinc finger protein 703##NM_025069|ZNF703|80139|zinc finger protein 703##BC032534|ZNF703|80139|zinc finger protein 703##NM_001003791|ERLIN2|11160|ER lipid raft associated 2##NM_007175|ERLIN2|11160|ER lipid raft associated 2##AL442077|ERLIN2|11160|ER lipid raft associated 2	1.863064	0.299343	CTCF.p2:10:0.299	denovo_WM_7:-30:0.442	denovo_WM_7:-31:0.442	denovo_WM_7:-70:0.753
chrX	55187284	55187423	reg1000215.p1	16.273	+	BC054022 NM_207339	-71857	+	NM_001015038 BC130359	-85837	+	TSC_hg19_v1_chrX_-_55057411 AK291589 X60364 AK313118 NM_000032 NM_001037967 NM_001037968	-129901	-	NM_001166703 TSC_hg19_v1_chrX_-_55187541 AK299935	191	-	TSC_hg19_v1_chrX_-_55187619 NM_001166702 BC006406 BC000919 BC017571 AK000441 AK311699 NM_001166699 NM_001166700 NM_001166701 NM_001166704 NM_138362	243	-	NM_001190708	21590	-	BC054022|PAGE2|203569|P antigen family, member 2 (prostate associated)##NM_207339|PAGE2|203569|P antigen family, member 2 (prostate associated)##NM_001015038|PAGE2B|389860|P antigen family, member 2B##BC130359|PAGE2B|389860|P antigen family, member 2B##AK291589|ALAS2|212|aminolevulinate, delta-, synthase 2##X60364|ALAS2|212|aminolevulinate, delta-, synthase 2##AK313118|ALAS2|212|aminolevulinate, delta-, synthase 2##NM_000032|ALAS2|212|aminolevulinate, delta-, synthase 2##NM_001037967|ALAS2|212|aminolevulinate, delta-, synthase 2##NM_001037968|ALAS2|212|aminolevulinate, delta-, synthase 2##NM_001166703|FAM104B|90736|family with sequence similarity 104, member B##AK299935|FAM104B|90736|family with sequence similarity 104, member B##NM_001166702|FAM104B|90736|family with sequence similarity 104, member B##BC006406|FAM104B|90736|family with sequence similarity 104, member B##BC000919|FAM104B|90736|family with sequence similarity 104, member B##BC017571|FAM104B|90736|family with sequence similarity 104, member B##AK000441|FAM104B|90736|family with sequence similarity 104, member B##AK311699|FAM104B|90736|family with sequence similarity 104, member B##NM_001166699|FAM104B|90736|family with sequence similarity 104, member B##NM_001166700|FAM104B|90736|family with sequence similarity 104, member B##NM_001166701|FAM104B|90736|family with sequence similarity 104, member B##NM_001166704|FAM104B|90736|family with sequence similarity 104, member B##NM_138362|FAM104B|90736|family with sequence similarity 104, member B##NM_001190708|MTRNR2L10|100463488|MT-RNR2-like 10	0.0	0.176937	
chr13	73383193	73383324	reg1000268.p1	16.260	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-26948	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-27052	-	AL832266 TSC_hg19_v1_chr13_-_73356067 AB023225 BC012468	-27196	-	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	249946	+	AF161471 AF113122 NM_007249	1324731	-	TSC_hg19_v1_chr13_-_74708425 AK291397	1325138	-	NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AL832266|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AB023225|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC012468|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12	0.999213	0.93849	CTCF.p2:-5:0.938
chr5	158526730	158526910	reg1000095.p2	16.257	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	-78	-	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-363	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1240730	-	AK304228 NM_001199382	107828	-	AK056513 NM_144726	108013	-	AK311433 AK304435 NM_001199381	108289	-	BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145##AK311433|RNF145|153830|ring finger protein 145##AK304435|RNF145|153830|ring finger protein 145##NM_001199381|RNF145|153830|ring finger protein 145	1.995892	0.0	denovo_WM_7:-1:0.841	denovo_WM_7:15:0.239	denovo_WM_7:16:0.239	denovo_WM_7:17:0.239	denovo_WM_7:18:0.239
chr6	10695021	10695178	reg1000196.p1	16.251	+	BC016820 NM_001145020	-262	-	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	-109085	+	NM_001491	-139151	+	TSC_hg19_v1_chr6_+_10695204 BC010907 NM_017906 AB527917 DQ892798 DQ896045	87	+	NM_001165258 NM_016462 TSC_hg19_v1_chr6_+_10723398 AF151028 BC010086 AK310191 AK309591 AF164962 BC002496 AK223462	28199	+	AK311340 TSC_hg19_v1_chr6_+_10748043 NM_001127711 NM_030969 AK294018 BC013913 AK291883 AK294152 BC007080 BC001033 BC071660	52941	+	BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC010907|PAK1IP1|55003|PAK1 interacting protein 1##NM_017906|PAK1IP1|55003|PAK1 interacting protein 1##DQ892798|PAK1IP1|55003|PAK1 interacting protein 1##DQ896045|PAK1IP1|55003|PAK1 interacting protein 1##NM_001165258|TMEM14C|51522|transmembrane protein 14C##NM_016462|TMEM14C|51522|transmembrane protein 14C##AF151028|TMEM14C|51522|transmembrane protein 14C##BC010086|TMEM14C|51522|transmembrane protein 14C##AK310191|TMEM14C|51522|transmembrane protein 14C##AK309591|TMEM14C|51522|transmembrane protein 14C##AF164962|TMEM14C|51522|transmembrane protein 14C##BC002496|TMEM14C|51522|transmembrane protein 14C##AK223462|TMEM14C|51522|transmembrane protein 14C##AK311340|TMEM14B|81853|transmembrane protein 14B##NM_001127711|TMEM14B|81853|transmembrane protein 14B##NM_030969|TMEM14B|81853|transmembrane protein 14B##BC013913|TMEM14B|81853|transmembrane protein 14B##AK291883|TMEM14B|81853|transmembrane protein 14B##AK294152|TMEM14B|81853|transmembrane protein 14B##BC007080|TMEM14B|81853|transmembrane protein 14B##BC001033|TMEM14B|81853|transmembrane protein 14B##BC071660|TMEM14B|81853|transmembrane protein 14B	0.99407	0.0	
chr12	5158460	5158572	reg1000187.p1	16.195	+	M55513 NM_002234 BC096357 BC096358 BC099665 BC099666 M60451 M83254	-5397	+	TSC_hg19_v1_chr12_+_5019070 NM_000217	-139456	+	NM_002235 X17622 TSC_hg19_v1_chr12_+_4918486	-240101	+	TSC_hg19_v1_chr12_+_5541277 AK293895 NM_001102654	382760	+	BC069773 NM_002527 BC107075 AB464638 CR541906 CU687004	444822	+	FJ384095 AB593159 TSC_hg19_v1_chr12_-_6054549	895958	-	M55513|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_002234|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096357|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096358|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099665|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099666|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M60451|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M83254|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_000217|KCNA1|3736|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)##NM_002235|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##X17622|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##AK293895|NTF3|4908|neurotrophin 3##NM_001102654|NTF3|4908|neurotrophin 3##BC069773|NTF3|4908|neurotrophin 3##NM_002527|NTF3|4908|neurotrophin 3##BC107075|NTF3|4908|neurotrophin 3##CR541906|NTF3|4908|neurotrophin 3##FJ384095|ANO2|57101|anoctamin 2##AB593159|ANO2|57101|anoctamin 2	0.999671	0.0	
chr3	115538776	115538899	reg1000263.p1	16.181	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-196418	+	NM_001130064 NM_002045	-196687	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-672723	-	AK315286 TSC_hg19_v1_chr3_-_116164338	625494	-	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	625536	-	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	3214696	-	AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315286|LSAMP|4045|limbic system-associated membrane protein##BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11	0.990848	1.904632	CTCF.p2:5:0.924	denovo_WM_7:39:0.714	denovo_WM_7:40:0.277	CTCF.p2:-54:0.980
chr8	117460258	117460390	reg1000286.p1	16.164	+	TSC_hg19_v1_chr8_-_116681365 AF183810	-778989	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	-779159	-	TSC_hg19_v1_chr8_-_116680208 AK304046	-780104	-	TSC_hg19_v1_chr8_-_117768041 BC000386 BT019594 CR456906 CU674186 AK222620 U54559 BC090880	307713	-	AK222520 TSC_hg19_v1_chr8_-_117768063 AK296162 NM_003756	307747	-	BC005955 BC022441 NM_032334 TSC_hg19_v1_chr8_+_117778752	318427	+	AF183810|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC000386|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##BT019594|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##CR456906|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##AK222620|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##U54559|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##BC090880|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##AK222520|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##AK296162|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##NM_003756|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##BC005955|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##BC022441|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##NM_032334|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)	1.412006	0.0	denovo_WM_7:36:0.320	denovo_WM_7:46:0.266	denovo_WM_7:47:0.266	denovo_WM_7:51:0.233
chr6	159466085	159466265	reg1000180.p1	16.140	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-74	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-44954	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-45356	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	124255	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	648075	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	648187	-	BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial	1.983674	0.0	denovo_WM_7:17:0.539	denovo_WM_7:18:0.270	denovo_WM_7:32:0.329	denovo_WM_7:33:0.597
chr1	8877784	8877964	reg1000188.p2	16.137	+	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	-282	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-393857	-	NM_001080397	-493485	+	GU170215 NM_001201483	53760	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	60833	-	BC015641 BC027725 TSC_hg19_v1_chr1_-_8938743 BC004458 BC009912 AK222517 BC022545 D28437	60861	-	BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)##BC015641|ENO1|2023|enolase 1, (alpha)##BC027725|ENO1|2023|enolase 1, (alpha)##BC004458|ENO1|2023|enolase 1, (alpha)##BC009912|ENO1|2023|enolase 1, (alpha)##AK222517|ENO1|2023|enolase 1, (alpha)##BC022545|ENO1|2023|enolase 1, (alpha)##D28437|ENO1|2023|enolase 1, (alpha)	1.952905	0.0	denovo_WM_7:18:0.763	denovo_WM_7:33:0.790
chr2	10550493	10550647	reg1000207.p1	16.079	+	AK000596 NM_134421	-106745	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-107521	+	BC093999 BC094001 NM_182626	-268591	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	37790	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	37882	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	279474	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	1.88372	0.0	denovo_WM_7:-4:0.883	denovo_WM_7:10:0.770
chr14	106023641	106023771	reg1000218.p1	16.078	+	TSC_hg19_v1_chr14_+_105992939 BC004221 NM_025268	-30765	+	TSC_hg19_v1_chr14_+_105957582 NM_001134875 NM_001134876 BX248283 BX248074 BC016028	-66070	+	BX248038 NM_001134877	-67187	+	TSC_hg19_v1_chr14_-_106092257 AJ294733 L13487	68630	-	BC040042 TSC_hg19_v1_chr14_-_106110945	87217	-	TSC_hg19_v1_chr14_-_106111114 AJ294731	87410	-	BC004221|TMEM121|80757|transmembrane protein 121##NM_025268|TMEM121|80757|transmembrane protein 121##NM_001134875|C14orf80|283643|chromosome 14 open reading frame 80##NM_001134876|C14orf80|283643|chromosome 14 open reading frame 80##BX248283|C14orf80|283643|chromosome 14 open reading frame 80##BX248074|C14orf80|283643|chromosome 14 open reading frame 80##BC016028|C14orf80|283643|chromosome 14 open reading frame 80##BX248038|C14orf80|283643|chromosome 14 open reading frame 80##NM_001134877|C14orf80|283643|chromosome 14 open reading frame 80##AJ294733|IGHG4|3503|immunoglobulin heavy constant gamma 4 (G4m marker)##BC040042|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##AJ294731|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)	0.993796	0.040266	denovo_WM_7:30:0.248	denovo_WM_7:31:0.248	denovo_WM_7:32:0.248	denovo_WM_7:33:0.248
chr19	49009510	49009648	reg1000296.p1	16.078	+	TSC_hg19_v1_chr19_+_48972625 AB209573 BC038713 AK292405 U70728 AK299590 BC004361 AB528907 DQ892565 DQ896856 X99753	-36910	+	NM_004228 NM_017457 TSC_hg19_v1_chr19_+_48972572	-37061	+	BC035918 NM_170720	-45074	+	AB384647 TSC_hg19_v1_chr19_-_49014849	5261	-	AB067470 NM_001080434	6852	-	TSC_hg19_v1_chr19_+_49055432 NM_177973 U92315 BC034694 CU689942	45885	+	AB209573|CYTH2|9266|cytohesin 2##BC038713|CYTH2|9266|cytohesin 2##AK292405|CYTH2|9266|cytohesin 2##U70728|CYTH2|9266|cytohesin 2##AK299590|CYTH2|9266|cytohesin 2##BC004361|CYTH2|9266|cytohesin 2##DQ892565|CYTH2|9266|cytohesin 2##DQ896856|CYTH2|9266|cytohesin 2##X99753|CYTH2|9266|cytohesin 2##NM_004228|CYTH2|9266|cytohesin 2##NM_017457|CYTH2|9266|cytohesin 2##BC035918|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_170720|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AB067470|LMTK3|114783|lemur tyrosine kinase 3##NM_001080434|LMTK3|114783|lemur tyrosine kinase 3##NM_177973|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##U92315|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##BC034694|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1	0.996875	0.223697	CTCF.p2:-15:0.224	denovo_WM_7:-56:0.793
chr12	67749715	67749862	reg1000301.p1	16.052	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	-86358	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	-86616	+	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	-86686	+	TSC_hg19_v1_chr12_+_68042500 AK313937 NM_003583 NM_006482 BC005809 BC006375 Y13493	292835	+	X62468 X62469 X62470 X62471 X62472 X62473 X62474 AF506749 AY044154 AY255839 X87308 AB451324 AB451453 AB590804 AY255837 AM903379 V00543 X13274 NM_000619 X01992 BC070256	803634	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	869764	-	BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK313937|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_003583|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_006482|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC005809|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC006375|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##Y13493|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##X62468|IFNG|3458|interferon, gamma##X62469|IFNG|3458|interferon, gamma##X62470|IFNG|3458|interferon, gamma##X62471|IFNG|3458|interferon, gamma##X62472|IFNG|3458|interferon, gamma##X62473|IFNG|3458|interferon, gamma##X62474|IFNG|3458|interferon, gamma##AF506749|IFNG|3458|interferon, gamma##AY044154|IFNG|3458|interferon, gamma##AY255839|IFNG|3458|interferon, gamma##X87308|IFNG|3458|interferon, gamma##AB451324|IFNG|3458|interferon, gamma##AB451453|IFNG|3458|interferon, gamma##AY255837|IFNG|3458|interferon, gamma##AM903379|IFNG|3458|interferon, gamma##V00543|IFNG|3458|interferon, gamma##X13274|IFNG|3458|interferon, gamma##NM_000619|IFNG|3458|interferon, gamma##X01992|IFNG|3458|interferon, gamma##BC070256|IFNG|3458|interferon, gamma##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26	0.999097	0.65003	CTCF.p2:18:0.650
chr17	73988145	73988264	reg1000154.p3	16.052	+	TSC_hg19_v1_chr17_-_73975509 NM_001185039 NM_004035 NM_007292	-12677	-	BC008767 TSC_hg19_v1_chr17_-_73975478	-12738	-	NM_001113324 BC047782 TSC_hg19_v1_chr17_+_73975332 BX647274 BX648576 AK097104	-12882	+	NM_001258 TSC_hg19_v1_chr17_+_73997033	8805	+	BC126103 BC126105 BC143813 BC143814 U53786 TSC_hg19_v1_chr17_-_74023388	35146	-	TSC_hg19_v1_chr17_-_74023511 NM_001988 AK290333	35310	-	NM_001185039|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_004035|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_007292|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##BC008767|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_001113324|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##BC047782|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##BX647274|TEN1-CDK3|100529145|TEN1-CDK3 readthrough##BX648576|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##AK097104|TEN1-CDK3|100529145|TEN1-CDK3 readthrough##NM_001258|CDK3|1018|cyclin-dependent kinase 3##BC126103|EVPL|2125|envoplakin##BC126105|EVPL|2125|envoplakin##BC143813|EVPL|2125|envoplakin##BC143814|EVPL|2125|envoplakin##U53786|EVPL|2125|envoplakin##NM_001988|EVPL|2125|envoplakin##AK290333|EVPL|2125|envoplakin	0.995253	0.0	
chr6	36583053	36583172	reg1000266.p1	16.013	+	TSC_hg19_v1_chr6_+_36562140 AK304097 D28423 BC000914 BC069018 AF107405	-20932	+	TSC_hg19_v1_chr6_+_36562138 AK312553	-20976	+	NM_003017 TSC_hg19_v1_chr6_+_36562093	-21021	+	NM_001220777 NM_078467	61139	+	NM_000389 TSC_hg19_v1_chr6_+_36646486 AK309512 NM_001220778 U09579	63359	+	TSC_hg19_v1_chr6_+_36646490 BC013967 AB209881 BC001935 BC000312 L25610 L26165 U03106 S67388 BC000275 L47232 L47233 AY008263	63413	+	AK304097|SRSF3|6428|serine/arginine-rich splicing factor 3##BC000914|SRSF3|6428|serine/arginine-rich splicing factor 3##BC069018|SRSF3|6428|serine/arginine-rich splicing factor 3##AF107405|SRSF3|6428|serine/arginine-rich splicing factor 3##AK312553|SRSF3|6428|serine/arginine-rich splicing factor 3##NM_003017|SRSF3|6428|serine/arginine-rich splicing factor 3##NM_001220777|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_078467|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_000389|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AK309512|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_001220778|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U09579|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC013967|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AB209881|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC001935|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000312|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L25610|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L26165|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U03106|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##S67388|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000275|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47232|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47233|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)	0.986953	0.633299	CTCF.p2:-1:0.633	denovo_WM_7:-35:0.685
chr14	50063465	50063643	reg1000231.p2	15.995	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-10461	-	AK309211 NM_001113498	-1919398	-	BC028193 NM_182830	-2251139	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	1906	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	23790	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	24153	+	BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC028193|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_182830|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	1.988543	0.0	denovo_WM_7:-47:0.314	denovo_WM_7:-48:0.314	denovo_WM_7:-49:0.314	denovo_WM_7:90:0.233	denovo_WM_7:91:0.234	denovo_WM_7:92:0.239	denovo_WM_7:93:0.239
chr1	93646638	93646813	reg1000230.p2	15.982	+	TSC_hg19_v1_chr1_+_93646280 BC056667 NM_206886	-444	+	BC070051 NM_001167830 NM_016040	-480	-	AY359039 BC016556 AF151858 TSC_hg19_v1_chr1_-_93645971 AK293308 BC016365 AK312787 CR936808 AK125882	-738	-	TSC_hg19_v1_chr1_-_93811348 Z36846 AL832786	164627	-	AK223442 TSC_hg19_v1_chr1_+_93811463	164738	+	TSC_hg19_v1_chr1_+_93811479 BC035507 NM_001938 BC068553	164753	+	BC056667|CCDC18|343099|coiled-coil domain containing 18##NM_206886|CCDC18|343099|coiled-coil domain containing 18##BC070051|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_001167830|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_016040|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AY359039|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016556|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AF151858|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK293308|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016365|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK312787|TMED5|50999|transmembrane emp24 protein transport domain containing 5##CR936808|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK125882|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AL832786|LOC100131564|100131564|uncharacterized LOC100131564##AK223442|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##BC035507|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##NM_001938|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##BC068553|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)	0.999768	0.0	denovo_WM_7:0:0.295	denovo_WM_7:0:0.295	denovo_WM_7:-1:0.295
chr19	14202429	14202572	reg1000222.p1	15.977	+	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	-1224	-	NM_001145028	-32530	-	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-59853	+	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	22554	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	25960	-	TSC_hg19_v1_chr19_-_14228563 AK290147	26069	-	AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##NM_001145028|PALM3|342979|paralemmin 3##BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.0	0.0	
chr2	10188952	10189079	reg1000281.p1	15.969	+	AB463821 TSC_hg19_v1_chr2_+_10186406	-2670	+	NM_001177718 AK302880 TSC_hg19_v1_chr2_+_10184414	-4606	+	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	-5223	+	AK091299 TSC_hg19_v1_chr2_-_10220297	31221	-	TSC_hg19_v1_chr2_-_10220367 AB590068 AF544983 NM_001037160	31414	-	NM_001165931 S40301 X59618 TSC_hg19_v1_chr2_+_10262805	73744	+	NM_001177718|KLF11|8462|Kruppel-like factor 11##AK302880|KLF11|8462|Kruppel-like factor 11##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11##AK091299|CYS1|192668|cystin 1##AF544983|CYS1|192668|cystin 1##NM_001037160|CYS1|192668|cystin 1##NM_001165931|RRM2|6241|ribonucleotide reductase M2##S40301|RRM2|6241|ribonucleotide reductase M2##X59618|RRM2|6241|ribonucleotide reductase M2	0.99915	0.942175	CTCF.p2:-10:0.942
chr7	65495990	65496119	reg1000309.p1	15.969	+	TSC_hg19_v1_chr7_-_65447233 NM_000181	-48788	-	TSC_hg19_v1_chr7_-_65447209 AK312752	-48836	-	TSC_hg19_v1_chr7_-_65447200 M15182 AK303819 AK223406 AK300223 AK311273	-48859	-	TSC_hg19_v1_chr7_+_65540820 NM_000048 BC008195 J03058 AK300519	44737	+	TSC_hg19_v1_chr7_+_65540823 AK310912 NM_001024943 NM_001024944 NM_001024946	44820	+	AK316334 TSC_hg19_v1_chr7_+_65540940 M14218 M57638 Y00753 BC033146	44926	+	NM_000181|GUSB|2990|glucuronidase, beta##AK312752|GUSB|2990|glucuronidase, beta##M15182|GUSB|2990|glucuronidase, beta##AK303819|GUSB|2990|glucuronidase, beta##AK223406|GUSB|2990|glucuronidase, beta##AK300223|GUSB|2990|glucuronidase, beta##AK311273|GUSB|2990|glucuronidase, beta##NM_000048|ASL|435|argininosuccinate lyase##BC008195|ASL|435|argininosuccinate lyase##J03058|ASL|435|argininosuccinate lyase##AK300519|ASL|435|argininosuccinate lyase##AK310912|ASL|435|argininosuccinate lyase##NM_001024943|ASL|435|argininosuccinate lyase##NM_001024944|ASL|435|argininosuccinate lyase##NM_001024946|ASL|435|argininosuccinate lyase##AK316334|ASL|435|argininosuccinate lyase##M14218|ASL|435|argininosuccinate lyase##M57638|ASL|435|argininosuccinate lyase##Y00753|ASL|435|argininosuccinate lyase##BC033146|ASL|435|argininosuccinate lyase	0.998505	0.900125	CTCF.p2:-12:0.900
chr12	12878336	12878500	reg1000125.p1	15.951	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-8292	+	AK096388 NM_006143	-29298	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-113535	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	438	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	60159	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	87872	+	AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	1.028663	0.0	denovo_WM_7:105:0.438	denovo_WM_7:106:0.438
chr12	94241250	94241385	reg1000243.p1	15.932	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-170134	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-275716	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-276497	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	301187	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	612214	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	612325	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	0.99036	0.0	
chr17	2185632	2185782	reg1000264.p1	15.926	+	DQ187313 NM_001098202	-226150	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	-227309	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-240399	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	21105	-	AB385377 AY145883 TSC_hg19_v1_chr17_-_2207028 NM_017575	21333	-	TSC_hg19_v1_chr17_+_2207247 AY743706 AK223120 AK023169 NM_021947 BC057234	21545	+	DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY145883|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_017575|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY743706|SRR|63826|serine racemase##AK223120|SRR|63826|serine racemase##AK023169|SRR|63826|serine racemase##NM_021947|SRR|63826|serine racemase##BC057234|SRR|63826|serine racemase	0.997585	0.0	
chr13	21754964	21755068	reg1000233.p2	15.922	+	TSC_hg19_v1_chr13_+_21750834 BC068492 BC023616 BC000002	-4216	+	CU690596 TSC_hg19_v1_chr13_-_21750699 AF361358 AK090584 AK314864 AX746521 BC013418 AK307976 BC048988 NM_001166017 NM_145061	-4328	-	NM_024026	-4645	+	TSC_hg19_v1_chr13_+_21872311 AK093279	117267	+	CU686599 TSC_hg19_v1_chr13_-_22033417 BC110517 AK295804 BC050367 AK299354	278374	-	TSC_hg19_v1_chr13_-_22033486 AX721051	278466	-	BC068492|MRP63|78988|mitochondrial ribosomal protein 63##BC023616|MRP63|78988|mitochondrial ribosomal protein 63##BC000002|MRP63|78988|mitochondrial ribosomal protein 63##AF361358|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK090584|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK314864|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC013418|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK307976|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC048988|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_001166017|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_145061|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_024026|MRP63|78988|mitochondrial ribosomal protein 63##AK093279|MIPEPP3|650794|mitochondrial intermediate peptidase pseudogene 3##BC110517|ZDHHC20|253832|zinc finger, DHHC-type containing 20##AK295804|ZDHHC20|253832|zinc finger, DHHC-type containing 20##BC050367|ZDHHC20|253832|zinc finger, DHHC-type containing 20##AK299354|ZDHHC20|253832|zinc finger, DHHC-type containing 20	0.986968	0.04038	denovo_WM_7:-27:0.247	denovo_WM_7:-28:0.247	denovo_WM_7:-29:0.247	denovo_WM_7:-30:0.247
chr5	158526930	158527110	reg1000095.p3	15.904	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	-278	-	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-563	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1240930	-	AK304228 NM_001199382	107628	-	AK056513 NM_144726	107813	-	AK311433 AK304435 NM_001199381	108089	-	BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145##AK311433|RNF145|153830|ring finger protein 145##AK304435|RNF145|153830|ring finger protein 145##NM_001199381|RNF145|153830|ring finger protein 145	2.116329	0.0	denovo_WM_7:-63:0.242	denovo_WM_7:-64:0.208	denovo_WM_7:-83:0.203	denovo_WM_7:-84:0.237
chr2	71454338	71454518	reg1000251.p1	15.902	+	TSC_hg19_v1_chr2_-_71454205 AB032981 NM_020459	-198	-	TSC_hg19_v1_chr2_+_71357768 AK310931 BC041084 X98494	-96643	+	TSC_hg19_v1_chr2_+_71357454 AK056862 NM_005791 BC126389	-96939	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	49298	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	104469	+	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	226373	+	AB032981|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_020459|PAIP2B|400961|poly(A) binding protein interacting protein 2B##AK310931|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC041084|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##X98494|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK056862|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##NM_005791|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC126389|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)	0.196065	0.0	
chr19	4457814	4457946	reg1000236.p2	15.897	+	AF272893 NM_025241	-91	-	AF272894 BC008288 NM_001171091	-2591	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	-55164	+	TSC_hg19_v1_chr19_+_4472263 NM_001001520 NM_032631 AY358600 AF294267 BC000755 CU674386 DQ892175 DQ895370	14467	+	BC009449 TSC_hg19_v1_chr19_+_4488757	30846	+	NM_001080400	59835	-	AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6##AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_001001520|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_032631|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AY358600|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AF294267|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC000755|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ892175|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ895370|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC009449|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_001080400|PLIN4|729359|perilipin 4	1.874623	0.0	denovo_WM_7:-65:0.840	denovo_WM_7:-80:0.840
chr12	38710279	38710443	reg1000241.p1	15.886	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4534888	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4534975	+	AJ312278 NM_032834	-4535146	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	264	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	589022	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1126638	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.970506	0.912441	denovo_WM_7:10:0.482	denovo_WM_7:11:0.428	CTCF.p2:-49:0.912
chr6	21648843	21648982	reg1000249.p1	15.876	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-54540	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1114189	+	CR749285 NM_001243076	-1244879	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	17747	+	BC015850 NM_000948	648817	-	X54394 X54393 GQ305133 M58594 NM_001163558	654135	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	1.087439	0.0	
chr10	30638120	30638284	reg1000237.p2	15.874	+	TSC_hg19_v1_chr10_-_30348516 AK308850 NM_020848 BC071601	-289708	-	TSC_hg19_v1_chr10_-_30316350 BC047548	-321771	-	TSC_hg19_v1_chr10_-_30025865 AK307640	-612296	-	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	31	-	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	84737	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	84919	+	AK308850|KIAA1462|57608|KIAA1462##NM_020848|KIAA1462|57608|KIAA1462##BC071601|KIAA1462|57608|KIAA1462##BC047548|KIAA1462|57608|KIAA1462##AK307640|SVIL|6840|supervillin##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8	0.996184	0.0	
chr1	8487645	8487820	reg1000256.p2	15.854	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-3715	-	NM_001080397	-103343	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-401334	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	389860	-	GU170215 NM_001201483	443902	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	450975	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.999146	0.0	
chr5	55232080	55232205	reg1000234.p1	15.848	+	NM_001242636 NM_001242639	-82993	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-84873	+	NM_001166534 AK093439 AX748127	-169417	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	58621	-	AK123389 NM_024669	297043	-	NM_005921	878757	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.998611	0.950748	CTCF.p2:-17:0.939
chr17	42295892	42296030	reg1000244.p2	15.832	+	TSC_hg19_v1_chr17_-_42277350 AK296689	-18576	-	BC037418 HQ258188 TSC_hg19_v1_chr17_-_42275499 BC113595 BC126113 NM_001098833 NM_020218	-20485	-	TSC_hg19_v1_chr17_+_42264588 AF370373	-31344	+	AK291733 TSC_hg19_v1_chr17_-_42296871	917	-	X56687 TSC_hg19_v1_chr17_-_42296940	971	-	TSC_hg19_v1_chr17_-_42297051 NM_001076684 NM_014233	1083	-	AK296689|ATXN7L3|56970|ataxin 7-like 3##BC037418|ATXN7L3|56970|ataxin 7-like 3##HQ258188|ATXN7L3|56970|ataxin 7-like 3##BC113595|ATXN7L3|56970|ataxin 7-like 3##BC126113|ATXN7L3|56970|ataxin 7-like 3##NM_001098833|ATXN7L3|56970|ataxin 7-like 3##NM_020218|ATXN7L3|56970|ataxin 7-like 3##AF370373|TMUB2|79089|transmembrane and ubiquitin-like domain containing 2##AK291733|UBTF|7343|upstream binding transcription factor, RNA polymerase I##X56687|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076684|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_014233|UBTF|7343|upstream binding transcription factor, RNA polymerase I	0.991474	0.15201	denovo_WM_7:9:0.777
chr20	13698518	13698671	reg1000254.p2	15.832	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	-79030	-	NM_080826 TSC_hg19_v1_chr20_+_13202422	-496171	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-708953	+	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	66947	-	TSC_hg19_v1_chr20_+_13765698 NM_001039375 NM_024120 AK289781 AK091060 AX746757 BC073158 CU687252 BC005984	67159	+	BC035741 AK302170 NM_025229	272664	-	BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_001039375|C20orf7|79133|chromosome 20 open reading frame 7##NM_024120|C20orf7|79133|chromosome 20 open reading frame 7##AK289781|C20orf7|79133|chromosome 20 open reading frame 7##AK091060|C20orf7|79133|chromosome 20 open reading frame 7##BC073158|C20orf7|79133|chromosome 20 open reading frame 7##BC005984|C20orf7|79133|chromosome 20 open reading frame 7##BC035741|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##AK302170|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##NM_025229|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)	0.946184	0.0	denovo_WM_7:11:0.349
chr13	96313397	96313533	reg1000288.p1	15.819	+	BC011450 AB023213 TSC_hg19_v1_chr13_-_96296961 BC041804 NM_014934 NM_198968	-16525	-	AB385415 AF272347 AF272348 TSC_hg19_v1_chr13_-_96294398	-19122	-	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	-108491	+	AK292947 NM_006260 TSC_hg19_v1_chr13_+_96329392	15929	+	TSC_hg19_v1_chr13_+_96329401 AK312861	15936	+	TSC_hg19_v1_chr13_+_96329409 BC047936 BC020215 BC033823 AB384852 CU690538	15993	+	BC011450|DZIP1|22873|DAZ interacting protein 1##AB023213|DZIP1|22873|DAZ interacting protein 1##BC041804|DZIP1|22873|DAZ interacting protein 1##NM_014934|DZIP1|22873|DAZ interacting protein 1##NM_198968|DZIP1|22873|DAZ interacting protein 1##AF272347|DZIP1|22873|DAZ interacting protein 1##AF272348|DZIP1|22873|DAZ interacting protein 1##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10##AK292947|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##NM_006260|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##AK312861|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##BC047936|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##BC033823|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3	1.845888	0.945897	CTCF.p2:-19:0.946	denovo_WM_7:20:0.744	denovo_WM_7:35:0.650
chr16	28199927	28200075	reg1000220.p1	15.803	+	TSC_hg19_v1_chr16_-_28074776 AY358206 NM_001109763	-125199	-	BC016460 NM_144675	-300524	-	TSC_hg19_v1_chr16_+_27561464 NM_015202 AB011128 BC150276 BC131508	-638537	+	AY026388 BC130304 BC144189 TSC_hg19_v1_chr16_-_28222816 AK123846	22784	-	TSC_hg19_v1_chr16_-_28223181 AB002368 NM_015171	23174	-	TSC_hg19_v1_chr16_-_28303389 AK091456 AX746995	103377	-	AY358206|GSG1L|146395|GSG1-like##NM_001109763|GSG1L|146395|GSG1-like##BC016460|GSG1L|146395|GSG1-like##NM_144675|GSG1L|146395|GSG1-like##NM_015202|KIAA0556|23247|KIAA0556##AB011128|KIAA0556|23247|KIAA0556##BC150276|KIAA0556|23247|KIAA0556##BC131508|KIAA0556|23247|KIAA0556##AY026388|XPO6|23214|exportin 6##BC130304|XPO6|23214|exportin 6##BC144189|XPO6|23214|exportin 6##AK123846|XPO6|23214|exportin 6##AB002368|XPO6|23214|exportin 6##NM_015171|XPO6|23214|exportin 6	1.945291	0.0	denovo_WM_7:0:0.876	denovo_WM_7:14:0.866
chr7	32731651	32731769	reg1000240.p1	15.802	+	TSC_hg19_v1_chr7_+_32535168 AK090619 AX746537 NM_015060 BC027724 CU693288	-196480	+	TSC_hg19_v1_chr7_+_32535132 AL833560	-196615	+	NM_001130710 NM_001139499	-196841	-	TSC_hg19_v1_chr7_+_32767741 AK094370 BC126382 BC126384	36028	+	AK292802 BC047107 TSC_hg19_v1_chr7_-_32931241	199551	-	TSC_hg19_v1_chr7_-_32931372 BC037887	199659	-	AK090619|AVL9|23080|AVL9 homolog (S. cerevisiase)##NM_015060|AVL9|23080|AVL9 homolog (S. cerevisiase)##BC027724|AVL9|23080|AVL9 homolog (S. cerevisiase)##AL833560|AVL9|23080|AVL9 homolog (S. cerevisiase)##NM_001130710|LSM5|23658|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001139499|LSM5|23658|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK094370|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126382|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126384|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##AK292802|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC047107|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC037887|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2	0.998631	0.999248	denovo_WM_7:20:0.336	denovo_WM_7:21:0.471	CTCF.p2:-31:0.999
chr7	140711951	140712082	reg1000227.p2	15.787	+	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	-87509	-	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	-315513	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-339078	+	AF151897 AK024776 NM_016071	2451	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	2734	-	NM_053035 TSC_hg19_v1_chr7_-_140714792	2770	-	AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33##NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33	0.999537	0.306899	CTCF.p2:59:0.307
chr12	111043511	111043669	reg1000238.p1	15.786	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-22464	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-22520	-	TSC_hg19_v1_chr12_-_111020755 AY357944	-22797	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	8335	+	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	83368	-	AK293543 NM_001040107	84009	-	AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1	0.991369	0.0	
chr8	11108610	11108745	reg1000138.p2	15.779	+	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	-49812	-	TSC_hg19_v1_chr8_-_10697386 AF205718 AF418553 AJ344104	-411268	-	AY238941 AY523566 BC093762 BC143382 NM_017884 TSC_hg19_v1_chr8_-_10697379 AY029161 AK313715 BC015479 AK296724	-411343	-	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	33335	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	33678	+	AJ291677 NM_054028 BC131696	79833	+	AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AF205718|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AF418553|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ344104|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY238941|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY523566|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC093762|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC143382|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##NM_017884|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AK313715|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC015479|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5	1.020421	0.0	
chr10	102295553	102295708	reg1000305.p1	15.738	+	AF077028 AK293081 AK304277 TSC_hg19_v1_chr10_-_102289637 AF115968 AL080056 NM_005004 AK295867	-5994	-	CR533490 DQ893286 DQ896618 EU831639 EU831723 TSC_hg19_v1_chr10_-_102289622 AF044958 AK289579 BC000466 BC019276	-6015	-	AF274863 BX640914 BC044569 BC053949 BC034946 NM_015490 AK289975 BC071580 AK294551	-15980	-	TSC_hg19_v1_chr10_+_102295696 AK295353 NM_017902 AK000622	5	+	TSC_hg19_v1_chr10_+_102295705 AF395830 BC007719 AB528628 DQ892767 DQ896013	128	+	TSC_hg19_v1_chr10_+_102505338 L25597 M89470 NM_000278 NM_003987 NM_003988 NM_003989 NM_003990	209772	+	AF077028|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AF115968|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AL080056|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##NM_005004|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##CR533490|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##DQ893286|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##DQ896618|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##EU831639|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##EU831723|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AF044958|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AK289579|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##BC000466|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##BC019276|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AF274863|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BX640914|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC044569|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC053949|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC034946|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##NM_015490|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK289975|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC071580|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK294551|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK295353|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##NM_017902|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##AK000622|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##AF395830|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##BC007719|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##DQ892767|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##DQ896013|HIF1AN|55662|hypoxia inducible factor 1, alpha subunit inhibitor##L25597|PAX2|5076|paired box 2##M89470|PAX2|5076|paired box 2##NM_000278|PAX2|5076|paired box 2##NM_003987|PAX2|5076|paired box 2##NM_003988|PAX2|5076|paired box 2##NM_003989|PAX2|5076|paired box 2##NM_003990|PAX2|5076|paired box 2	0.998738	0.0	denovo_WM_7:16:0.239	denovo_WM_7:19:0.378	denovo_WM_7:20:0.244
chr19	17010636	17010771	reg1000271.p1	15.738	+	AK092632 TSC_hg19_v1_chr19_-_17007756 AK124052	-2955	-	TSC_hg19_v1_chr19_+_16999929 BC074782 AF080214 AY431102	-10768	+	TSC_hg19_v1_chr19_+_16999830 AF055917 NM_003950	-10878	+	AK075099 TSC_hg19_v1_chr19_-_17014494	3750	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	126837	-	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	175618	-	AK092632|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK124052|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC074782|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##AF080214|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##AY431102|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##AF055917|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##NM_003950|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##AK075099|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8	0.99713	0.054953	denovo_WM_7:14:0.911
chr12	108070166	108070265	reg1000248.p1	15.735	+	AK127295 NM_001017523	-95582	+	TSC_hg19_v1_chr12_+_107712210 BC027931 NM_001018072 BC146824	-358002	+	TSC_hg19_v1_chr12_-_107487630 NM_004075	-582605	-	TSC_hg19_v1_chr12_+_108079586 AK297961 BC010921 AK223162 BC032127 BC001652 L07758 NM_007062 BC046144 BC040135 BC000067 AK290681 DQ892735 DQ895982 DQ896014 CU674810 CU679850 AK296252	9452	+	AK056378 TSC_hg19_v1_chr12_-_108154899	84624	-	TSC_hg19_v1_chr12_-_108154913 NM_012406	84695	-	AK127295|BTBD11|121551|BTB (POZ) domain containing 11##NM_001017523|BTBD11|121551|BTB (POZ) domain containing 11##BC027931|BTBD11|121551|BTB (POZ) domain containing 11##NM_001018072|BTBD11|121551|BTB (POZ) domain containing 11##BC146824|BTBD11|121551|BTB (POZ) domain containing 11##NM_004075|CRY1|1407|cryptochrome 1 (photolyase-like)##AK297961|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC010921|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK223162|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC032127|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC001652|PWP1|11137|PWP1 homolog (S. cerevisiae)##L07758|PWP1|11137|PWP1 homolog (S. cerevisiae)##NM_007062|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC046144|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC040135|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC000067|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK290681|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ892735|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ895982|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ896014|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK296252|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK056378|PRDM4|11108|PR domain containing 4##NM_012406|PRDM4|11108|PR domain containing 4	1.169152	0.97472	CTCF.p2:-6:0.975
chr7	27960903	27961042	reg1000261.p2	15.712	+	TSC_hg19_v1_chr7_+_27779811 U33821 BC050358	-181153	+	BC001764 TSC_hg19_v1_chr7_+_27779809	-181163	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	-181197	+	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	259229	-	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	259434	-	L05913 NM_182899	377967	+	U33821|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC050358|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5	0.997678	0.834454	denovo_WM_7:-9:0.771	CTCF.p2:44:0.834
chr10	3917580	3917732	reg1000259.p1	15.706	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-90147	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-90345	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-702651	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	950762	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1087858	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1087967	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.019876	0.0	
chr8	17434506	17434643	reg1000293.p1	15.705	+	AK289450 NM_006207	-633	+	NM_001164771 NM_003046 BC069648 BC104905 BC113661 BC143583	-38236	+	TSC_hg19_v1_chr8_+_17354599 NM_001008539 AK314287	-79994	+	D37965 TSC_hg19_v1_chr8_+_17434724 BC010927 AB529173 CR541952 CU679854 DQ892944 DQ896192	156	+	AF293357 BC017740 AK314692 BC098381 BC142971 FJ472827 AK289750 NM_020749	120627	-	AK125188 FJ472826 NM_001001931	145155	-	AK289450|PDGFRL|5157|platelet-derived growth factor receptor-like##NM_006207|PDGFRL|5157|platelet-derived growth factor receptor-like##NM_001164771|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##NM_003046|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##BC069648|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##BC104905|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##BC113661|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##BC143583|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##NM_001008539|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##AK314287|SLC7A2|6542|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2##D37965|PDGFRL|5157|platelet-derived growth factor receptor-like##BC010927|PDGFRL|5157|platelet-derived growth factor receptor-like##CR541952|PDGFRL|5157|platelet-derived growth factor receptor-like##DQ892944|PDGFRL|5157|platelet-derived growth factor receptor-like##DQ896192|PDGFRL|5157|platelet-derived growth factor receptor-like##AF293357|MTUS1|57509|microtubule associated tumor suppressor 1##BC017740|MTUS1|57509|microtubule associated tumor suppressor 1##AK314692|MTUS1|57509|microtubule associated tumor suppressor 1##BC098381|MTUS1|57509|microtubule associated tumor suppressor 1##BC142971|MTUS1|57509|microtubule associated tumor suppressor 1##FJ472827|MTUS1|57509|microtubule associated tumor suppressor 1##AK289750|MTUS1|57509|microtubule associated tumor suppressor 1##NM_020749|MTUS1|57509|microtubule associated tumor suppressor 1##AK125188|MTUS1|57509|microtubule associated tumor suppressor 1##FJ472826|MTUS1|57509|microtubule associated tumor suppressor 1##NM_001001931|MTUS1|57509|microtubule associated tumor suppressor 1	0.999591	0.686305	CTCF.p2:-15:0.686	denovo_WM_7:24:0.882
chr14	37022958	37023093	reg1000307.p1	15.696	+	BT009773 DQ892964 DQ896211 D50740 BC006221 U43203 NM_001079668	-33644	-	NM_003317 U33749	-34123	-	TSC_hg19_v1_chr14_-_36982983 BC042093 NM_001101341	-40043	-	BC041090 NM_014360 AF000295 AK313537	28773	-	NM_006194	103747	+	TSC_hg19_v1_chr14_+_37131069 BC001159	108059	+	BT009773|NKX2-1|7080|NK2 homeobox 1##DQ892964|NKX2-1|7080|NK2 homeobox 1##DQ896211|NKX2-1|7080|NK2 homeobox 1##D50740|NKX2-1|7080|NK2 homeobox 1##BC006221|NKX2-1|7080|NK2 homeobox 1##U43203|NKX2-1|7080|NK2 homeobox 1##NM_001079668|NKX2-1|7080|NK2 homeobox 1##NM_003317|NKX2-1|7080|NK2 homeobox 1##U33749|NKX2-1|7080|NK2 homeobox 1##BC042093|SFTA3|253970|surfactant associated 3##NM_001101341|SFTA3|253970|surfactant associated 3##BC041090|NKX2-8|26257|NK2 homeobox 8##NM_014360|NKX2-8|26257|NK2 homeobox 8##AF000295|NKX2-8|26257|NK2 homeobox 8##AK313537|NKX2-8|26257|NK2 homeobox 8##NM_006194|PAX9|5083|paired box 9##BC001159|PAX9|5083|paired box 9	1.997025	0.106332	denovo_WM_7:-17:0.232	denovo_WM_7:-18:0.671	denovo_WM_7:-33:0.683	denovo_WM_7:-34:0.209
chr1	151128596	151128710	reg1000173.p2	15.695	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	-9606	-	BC027033 NM_144618 TSC_hg19_v1_chr1_+_151043238 AK092230 AX747418 AK313606 AK301882	-85469	+	TSC_hg19_v1_chr1_+_151032908 BC019253	-95744	+	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	477	+	TSC_hg19_v1_chr1_-_151138337 BX647911 NM_212551 AK298706 NM_001136543	9723	-	NM_001204856 NM_024041 AK301644 TSC_hg19_v1_chr1_+_151138545 AK056322 BC000264 DQ892531 DQ895742	9909	+	AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##BC027033|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##NM_144618|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK092230|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK313606|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK301882|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##BC019253|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BX647911|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_212551|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##AK298706|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001136543|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001204856|SCNM1|79005|sodium channel modifier 1##NM_024041|SCNM1|79005|sodium channel modifier 1##AK301644|SCNM1|79005|sodium channel modifier 1##AK056322|SCNM1|79005|sodium channel modifier 1##BC000264|SCNM1|79005|sodium channel modifier 1##DQ892531|SCNM1|79005|sodium channel modifier 1##DQ895742|SCNM1|79005|sodium channel modifier 1	1.31586	0.912365	CTCF.p2:5:0.912	denovo_WM_7:-55:0.233	denovo_WM_7:-70:0.231
chr18	52989591	52989765	reg1000282.p3	15.693	+	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	-676	-	FR748222 NM_001243236	-19896	-	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-362991	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	79160	-	FR748208 TSC_hg19_v1_chr18_-_53068947	79266	-	AK095041 NM_001243232	81547	-	M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4##AK095041|TCF4|6925|transcription factor 4##NM_001243232|TCF4|6925|transcription factor 4	1.86039	0.0	denovo_WM_7:-1:0.825	denovo_WM_7:-16:0.840
chr11	76758871	76759001	reg1000246.p3	15.685	+	NM_138706 AK127544 AK292773 TSC_hg19_v1_chr11_+_76745441 AK313682 AK172863 BC103908 BC103909 BC103910	-13477	+	TSC_hg19_v1_chr11_+_76571985 AK308856 AK002100 AK316120 AK295327 AK295142 AK294978 BC049837 BC063034 AK293800 BC073853 CU687264	-186943	+	TSC_hg19_v1_chr11_+_76571961 NM_018367 AK315000 AF327353 AF214454	-187004	+	TSC_hg19_v1_chr11_+_76778017 BC018123 NM_004055 AK128124 AK313132 AK310978 AK094150 AB209087	19091	+	CU686775 BC069115 BC069365 NM_006189	54948	+	NM_000260 NM_001127179 U39226 NM_001127180 U34227 U55208 U55209 BC144519	80392	+	NM_138706|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK127544|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK292773|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK313682|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK172863|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103908|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103909|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103910|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK308856|ACER3|55331|alkaline ceramidase 3##AK002100|ACER3|55331|alkaline ceramidase 3##AK316120|ACER3|55331|alkaline ceramidase 3##AK295327|ACER3|55331|alkaline ceramidase 3##AK295142|ACER3|55331|alkaline ceramidase 3##AK294978|ACER3|55331|alkaline ceramidase 3##BC049837|ACER3|55331|alkaline ceramidase 3##BC063034|ACER3|55331|alkaline ceramidase 3##AK293800|ACER3|55331|alkaline ceramidase 3##BC073853|ACER3|55331|alkaline ceramidase 3##NM_018367|ACER3|55331|alkaline ceramidase 3##AK315000|ACER3|55331|alkaline ceramidase 3##AF327353|ACER3|55331|alkaline ceramidase 3##AF214454|ACER3|55331|alkaline ceramidase 3##BC018123|CAPN5|726|calpain 5##NM_004055|CAPN5|726|calpain 5##AK128124|CAPN5|726|calpain 5##AK313132|CAPN5|726|calpain 5##AK310978|CAPN5|726|calpain 5##AK094150|CAPN5|726|calpain 5##AB209087|CAPN5|726|calpain 5##BC069115|OMP|4975|olfactory marker protein##BC069365|OMP|4975|olfactory marker protein##NM_006189|OMP|4975|olfactory marker protein##NM_000260|MYO7A|4647|myosin VIIA##NM_001127179|MYO7A|4647|myosin VIIA##U39226|MYO7A|4647|myosin VIIA##NM_001127180|MYO7A|4647|myosin VIIA##U34227|MYO7A|4647|myosin VIIA##U55208|MYO7A|4647|myosin VIIA##U55209|MYO7A|4647|myosin VIIA##BC144519|MYO7A|4647|myosin VIIA	2.50706	0.943932	CTCF.p2:-13:0.944	denovo_WM_7:39:0.502	denovo_WM_7:54:0.602	denovo_WM_7:70:0.381
chr20	33684158	33684272	reg1000225.p1	15.672	+	TSC_hg19_v1_chr20_-_33680611 AK298958 AK303476 AK315582 NM_015638 NM_199368	-3575	-	TSC_hg19_v1_chr20_-_33680600 AK074106	-3619	-	TSC_hg19_v1_chr20_-_33680592 AB590540 CU680522 BC013144	-3743	-	AK096016 AK298794 TSC_hg19_v1_chr20_-_33734933	50698	-	CR457266 CU674674 TSC_hg19_v1_chr20_-_33735112 BC016184 AK300212 AY358580 BC001371 AK023931 AK303816 AK001645 NM_001145025 NM_018217	50909	-	AK314887 NM_006404 BC014451 X89079 L35545 CR456948 DQ892834 DQ896081	75650	+	AK298958|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK303476|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK315582|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##NM_015638|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##NM_199368|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK074106|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##BC013144|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK096016|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK298794|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##CR457266|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC016184|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK300212|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AY358580|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC001371|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK023931|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK303816|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK001645|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_001145025|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_018217|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK314887|PROCR|10544|protein C receptor, endothelial##NM_006404|PROCR|10544|protein C receptor, endothelial##BC014451|PROCR|10544|protein C receptor, endothelial##X89079|PROCR|10544|protein C receptor, endothelial##L35545|PROCR|10544|protein C receptor, endothelial##CR456948|PROCR|10544|protein C receptor, endothelial##DQ892834|PROCR|10544|protein C receptor, endothelial##DQ896081|PROCR|10544|protein C receptor, endothelial	1.016038	0.945134	CTCF.p2:-19:0.945	denovo_WM_7:-48:0.314	denovo_WM_7:-49:0.314	denovo_WM_7:-50:0.314
chr16	46821973	46822132	reg1000235.p1	15.615	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-39890	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-98455	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-98487	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	43036	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	96229	+	NM_001142466 AK094971	97050	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	2.352402	0.0	denovo_WM_7:12:0.690	denovo_WM_7:27:0.592	denovo_WM_7:55:0.254
chrX	130863518	130863635	reg1000086.p2	15.613	+	BC137050 AB529233 NM_001004486	-185578	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-440164	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-440314	-	TSC_hg19_v1_chrX_-_130964633 AK097911	101075	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	293745	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	294064	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.03411	0.0	
chr7	66767556	66767700	reg1000247.p1	15.610	+	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	-20	+	TSC_hg19_v1_chr7_-_66767458 BC029419 D38438 D38500 BC029368 BC038841 BC056507	-200	-	TSC_hg19_v1_chr7_+_66461858 BC042156 NM_018264 AK001762 BC015591 BC051888	-305770	+	TSC_hg19_v1_chr7_+_66767642 AK307290	20	+	TSC_hg19_v1_chr7_+_66767656 BC026058	29	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	2296208	+	AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##BC029419|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38438|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38500|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC029368|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC038841|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC042156|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##NM_018264|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##AK001762|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC015591|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC051888|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##AK307290|STAG3L4|64940|stromal antigen 3-like 4##BC026058|STAG3L4|64940|stromal antigen 3-like 4##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2	0.990112	0.0	denovo_WM_7:-10:0.873
chr9	100864253	100864419	reg1000280.p1	15.597	+	TSC_hg19_v1_chr9_+_100819020 NM_018946 AK316608 BC000008 AK001659 BC019315 AF257466 CU676426 DQ892167 DQ895361	-45321	+	TSC_hg19_v1_chr9_+_100745672 Y07569	-118609	+	TSC_hg19_v1_chr9_+_100745652 BC019658 Y07570 BC013003	-118684	+	TSC_hg19_v1_chr9_-_100881503 AB529155 DQ893293 DQ896623 AF220130 AF220131 D50919 NM_014788 NM_033219 BC006333 NM_033220 AK292825	17149	-	TSC_hg19_v1_chr9_-_100881526 AK055833	17208	-	NM_003389	70837	-	NM_018946|NANS|54187|N-acetylneuraminic acid synthase##AK316608|NANS|54187|N-acetylneuraminic acid synthase##BC000008|NANS|54187|N-acetylneuraminic acid synthase##AK001659|NANS|54187|N-acetylneuraminic acid synthase##BC019315|NANS|54187|N-acetylneuraminic acid synthase##AF257466|NANS|54187|N-acetylneuraminic acid synthase##DQ892167|NANS|54187|N-acetylneuraminic acid synthase##DQ895361|NANS|54187|N-acetylneuraminic acid synthase##Y07569|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC019658|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##Y07570|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC013003|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##DQ893293|TRIM14|9830|tripartite motif containing 14##DQ896623|TRIM14|9830|tripartite motif containing 14##AF220130|TRIM14|9830|tripartite motif containing 14##AF220131|TRIM14|9830|tripartite motif containing 14##D50919|TRIM14|9830|tripartite motif containing 14##NM_014788|TRIM14|9830|tripartite motif containing 14##NM_033219|TRIM14|9830|tripartite motif containing 14##BC006333|TRIM14|9830|tripartite motif containing 14##NM_033220|TRIM14|9830|tripartite motif containing 14##AK292825|TRIM14|9830|tripartite motif containing 14##AK055833|TRIM14|9830|tripartite motif containing 14##NM_003389|CORO2A|7464|coronin, actin binding protein, 2A	1.914229	0.0	denovo_WM_7:-22:0.874	denovo_WM_7:-37:0.465	denovo_WM_7:-38:0.469
chr11	1874090	1874265	reg1000292.p2	15.595	+	NM_001145841	-12746	+	BC032148 NM_001145829	-13459	+	NM_003282	-13945	+	NM_002339 TSC_hg19_v1_chr11_+_1874296 AK222733 BC001785 X55188 AK290279 S67783 CR541728 CR541754 CU674886	109	+	AK092071 AX747343 NM_001242932	12217	+	NM_001013253	15725	+	NM_001145841|TNNI2|7136|troponin I type 2 (skeletal, fast)##BC032148|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_001145829|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_003282|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_002339|LSP1|4046|lymphocyte-specific protein 1##AK222733|LSP1|4046|lymphocyte-specific protein 1##BC001785|LSP1|4046|lymphocyte-specific protein 1##X55188|LSP1|4046|lymphocyte-specific protein 1##AK290279|LSP1|4046|lymphocyte-specific protein 1##S67783|LSP1|4046|lymphocyte-specific protein 1##CR541728|LSP1|4046|lymphocyte-specific protein 1##CR541754|LSP1|4046|lymphocyte-specific protein 1##AK092071|LSP1|4046|lymphocyte-specific protein 1##NM_001242932|LSP1|4046|lymphocyte-specific protein 1##NM_001013253|LSP1|4046|lymphocyte-specific protein 1	0.986241	0.329203	denovo_WM_7:-17:0.782	denovo_WM_7:-18:0.204	CTCF.p2:73:0.329
chr3	156273100	156273236	reg1000252.p1	15.549	+	TSC_hg19_v1_chr3_-_156272919 AF087907 AF110647 BC017203 NM_007107	-225	-	TSC_hg19_v1_chr3_-_156272894 BT006669 DQ892572 DQ895788 AK304364 AK312935	-287	-	NM_172159 BC043166 AK127240	-264358	+	NM_015508	119036	+	AK291261 TSC_hg19_v1_chr3_+_156392402 BX537965 BC050350	119234	+	CR749647 NM_001184717	119546	+	AF087907|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF110647|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BC017203|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_007107|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BT006669|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ892572|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ895788|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK304364|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK312935|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_015508|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AK291261|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BX537965|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BC050350|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##CR749647|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##NM_001184717|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase	0.067139	0.0	
chr4	130283990	130284117	reg1000322.p1	15.549	+	NM_001099783	-266772	+	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	-269186	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	-269463	-	TSC_hg19_v1_chr4_+_134070448 AB037821 AY013874 NM_020815 NM_032961	3786403	+	AK024636 TSC_hg19_v1_chr4_+_134073255 AL157470	3789230	+	NM_001114734 TSC_hg19_v1_chr4_-_135122935	4838865	-	NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##AB037821|PCDH10|57575|protocadherin 10##AY013874|PCDH10|57575|protocadherin 10##NM_020815|PCDH10|57575|protocadherin 10##NM_032961|PCDH10|57575|protocadherin 10##AK024636|PCDH10|57575|protocadherin 10##AL157470|PCDH10|57575|protocadherin 10##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like	0.987673	0.99422	CTCF.p2:-17:0.994	denovo_WM_7:28:0.936
chr19	13905255	13905395	reg1000202.p1	15.544	+	TSC_hg19_v1_chr19_+_13885286 BC015465 AF086483 AF078852 DQ891569 DQ894761 AK311855	-20041	+	TSC_hg19_v1_chr19_+_13885269 NM_014047	-20060	+	TSC_hg19_v1_chr19_+_13875374 AY358176 BC001703 EU832338 EU832423 AM392616 AM393224 AB528180	-29934	+	TSC_hg19_v1_chr19_+_13906256 AK024452 NM_023072	920	+	AL832183 BX640708 TSC_hg19_v1_chr19_-_13947102	41777	-	BC101209 BC101210 NM_001098622	82737	+	BC015465|C19orf53|28974|chromosome 19 open reading frame 53##AF086483|C19orf53|28974|chromosome 19 open reading frame 53##AF078852|C19orf53|28974|chromosome 19 open reading frame 53##DQ891569|C19orf53|28974|chromosome 19 open reading frame 53##DQ894761|C19orf53|28974|chromosome 19 open reading frame 53##AK311855|C19orf53|28974|chromosome 19 open reading frame 53##NM_014047|C19orf53|28974|chromosome 19 open reading frame 53##AY358176|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##BC001703|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832338|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832423|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM392616|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM393224|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AK024452|ZSWIM4|65249|zinc finger, SWIM-type containing 4##NM_023072|ZSWIM4|65249|zinc finger, SWIM-type containing 4##AL832183|LOC284454|284454|uncharacterized LOC284454##BX640708|LOC284454|284454|uncharacterized LOC284454##BC101209|NANOS3|342977|nanos homolog 3 (Drosophila)##BC101210|NANOS3|342977|nanos homolog 3 (Drosophila)##NM_001098622|NANOS3|342977|nanos homolog 3 (Drosophila)	1.990244	0.0	denovo_WM_7:-50:0.916	denovo_WM_7:-65:0.927
chr2	113896108	113896237	reg1000269.p1	15.521	+	TSC_hg19_v1_chr2_+_113885174 AK290926 X52015 X53296 AB529162	-10968	+	NM_173842 TSC_hg19_v1_chr2_+_113885141	-11033	+	AF043143 NM_000577 NM_173841 NM_173843 M55646 AK290898 X84348 BC009745	-20655	+	AK290045 TSC_hg19_v1_chr2_+_113931556 AB208798 NM_012455	35382	+	TSC_hg19_v1_chr2_+_113931576 BC035307 BC073151	35409	+	TSC_hg19_v1_chr2_+_113993123 AK056052 AK307781 BX537688 AK056355 AK130275	97098	+	AK290926|IL1RN|3557|interleukin 1 receptor antagonist##X52015|IL1RN|3557|interleukin 1 receptor antagonist##X53296|IL1RN|3557|interleukin 1 receptor antagonist##NM_173842|IL1RN|3557|interleukin 1 receptor antagonist##AF043143|IL1RN|3557|interleukin 1 receptor antagonist##NM_000577|IL1RN|3557|interleukin 1 receptor antagonist##NM_173841|IL1RN|3557|interleukin 1 receptor antagonist##NM_173843|IL1RN|3557|interleukin 1 receptor antagonist##M55646|IL1RN|3557|interleukin 1 receptor antagonist##AK290898|IL1RN|3557|interleukin 1 receptor antagonist##X84348|IL1RN|3557|interleukin 1 receptor antagonist##BC009745|IL1RN|3557|interleukin 1 receptor antagonist##AK290045|PSD4|23550|pleckstrin and Sec7 domain containing 4##AB208798|PSD4|23550|pleckstrin and Sec7 domain containing 4##NM_012455|PSD4|23550|pleckstrin and Sec7 domain containing 4##BC035307|PSD4|23550|pleckstrin and Sec7 domain containing 4##BC073151|PSD4|23550|pleckstrin and Sec7 domain containing 4##AK056052|LOC654433|654433|uncharacterized LOC654433##AK307781|LOC654433|654433|uncharacterized LOC654433##BX537688|LOC654433|654433|uncharacterized LOC654433##AK056355|LOC654433|654433|uncharacterized LOC654433##AK130275|LOC654433|654433|uncharacterized LOC654433	0.992911	0.940002	CTCF.p2:-18:0.940	denovo_WM_7:30:0.246	denovo_WM_7:33:0.389	denovo_WM_7:34:0.251
chr7	35464598	35464723	reg1000274.p1	15.521	+	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	-170930	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	-238868	-	DQ287932 NM_015283	-387008	-	TSC_hg19_v1_chr7_-_35734533 BC005091	269936	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	270079	-	TSC_hg19_v1_chr7_-_35734795 NM_022373	270118	-	NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC005091|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##NM_022373|HERPUD2|64224|HERPUD family member 2	0.9998	0.981658	CTCF.p2:9:0.982
chr8	126620196	126620360	reg1000212.p2	15.507	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-177699	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-516181	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-516221	-	TSC_hg19_v1_chr8_-_126963395 BX648371	343135	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	950277	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	950446	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	2.777163	0.0	denovo_WM_7:-12:0.349	denovo_WM_7:-14:0.310	denovo_WM_7:-15:0.294	denovo_WM_7:-31:0.442	denovo_WM_7:-32:0.442	denovo_WM_7:-84:0.639
chr6	26358757	26358931	reg1000273.p2	15.491	+	BC120939 CR542169 CR542187 NM_003543 DQ892790 DQ896037 BC010926 TSC_hg19_v1_chr6_-_26285763	-73099	-	BC101653 BC101655 EU446969 NM_003525	-85671	+	TSC_hg19_v1_chr6_-_26271642 AB591037 EU446974 NM_003534 BC079835	-87227	-	NM_001197247 NM_001197249 NM_007047 TSC_hg19_v1_chr6_+_26365425 AK312847 AK290880 U90546 AK303600 NM_001197248 BC002832 BC020214 AK299417	6608	+	AF257505 NM_001197246	9561	+	NM_001197238 NM_001197239 NM_001197240 NM_006995 NM_181531 AK304744 AK289883 AK293526 AK298570 U90550 BC017497 NM_001197237 BC014021	24548	+	BC120939|HIST1H4H|8365|histone cluster 1, H4h##CR542169|HIST1H4H|8365|histone cluster 1, H4h##CR542187|HIST1H4H|8365|histone cluster 1, H4h##NM_003543|HIST1H4H|8365|histone cluster 1, H4h##DQ892790|HIST1H4H|8365|histone cluster 1, H4h##DQ896037|HIST1H4H|8365|histone cluster 1, H4h##BC010926|HIST1H4H|8365|histone cluster 1, H4h##BC101653|HIST1H2BI|8346|histone cluster 1, H2bi##BC101655|HIST1H2BI|8346|histone cluster 1, H2bi##EU446969|HIST1H2BI|8346|histone cluster 1, H2bi##NM_003525|HIST1H2BI|8346|histone cluster 1, H2bi##EU446974|HIST1H3G|8355|histone cluster 1, H3g##NM_003534|HIST1H3G|8355|histone cluster 1, H3g##BC079835|HIST1H3G|8355|histone cluster 1, H3g##NM_001197247|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197249|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_007047|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK312847|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK290880|BTN3A2|11118|butyrophilin, subfamily 3, member A2##U90546|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK303600|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197248|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC002832|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC020214|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK299417|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AF257505|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197246|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197238|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197239|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197240|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_006995|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_181531|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK304744|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK289883|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK293526|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK298570|BTN2A2|10385|butyrophilin, subfamily 2, member A2##U90550|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC017497|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197237|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC014021|BTN2A2|10385|butyrophilin, subfamily 2, member A2	1.992347	0.0	denovo_WM_7:-34:0.564	denovo_WM_7:-35:0.432	denovo_WM_7:-49:0.485	denovo_WM_7:-50:0.512
chr6	10889760	10889906	reg1000203.p1	15.482	+	AK128130 NM_001040274	-2770	+	AF091149 BC069603 AF079550 BC117316 BC117318 NM_004752	-7754	-	AK314408 AB593146 AK097831 AK310329 TSC_hg19_v1_chr6_-_10838761 BC033002 NM_001242385 NM_001242957 NM_005906	-51084	-	TSC_hg19_v1_chr6_-_11044539 AK000341 BC060809 BC050278 NM_017770	154747	-	TSC_hg19_v1_chr6_+_11094066 AK058186	204224	+	BC032356 NM_001135575 TSC_hg19_v1_chr6_+_11094342	204470	+	AK128130|SYCP2L|221711|synaptonemal complex protein 2-like##NM_001040274|SYCP2L|221711|synaptonemal complex protein 2-like##AF091149|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC069603|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AF079550|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117316|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117318|GCM2|9247|glial cells missing homolog 2 (Drosophila)##NM_004752|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AK314408|MAK|4117|male germ cell-associated kinase##AB593146|MAK|4117|male germ cell-associated kinase##AK097831|MAK|4117|male germ cell-associated kinase##AK310329|MAK|4117|male germ cell-associated kinase##BC033002|MAK|4117|male germ cell-associated kinase##NM_001242385|MAK|4117|male germ cell-associated kinase##NM_001242957|MAK|4117|male germ cell-associated kinase##NM_005906|MAK|4117|male germ cell-associated kinase##AK000341|ELOVL2|54898|ELOVL fatty acid elongase 2##BC060809|ELOVL2|54898|ELOVL fatty acid elongase 2##BC050278|ELOVL2|54898|ELOVL fatty acid elongase 2##NM_017770|ELOVL2|54898|ELOVL fatty acid elongase 2##AK058186|C6orf228|221710|chromosome 6 open reading frame 228##BC032356|C6orf228|221710|chromosome 6 open reading frame 228##NM_001135575|C6orf228|221710|chromosome 6 open reading frame 228	0.998675	0.0	
chr12	1762128	1762246	reg1000232.p1	15.421	+	BC001749 NM_032642	-23776	+	AY009399 NM_030775	-35966	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	-58836	-	AK127196 TSC_hg19_v1_chr12_+_1800187	37979	+	TSC_hg19_v1_chr12_+_1800235 AK128511 AK127111 BC051858 NM_024551	38030	+	BC048288 TSC_hg19_v1_chr12_-_1920907 AK301234	158737	-	BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AK127196|ADIPOR2|79602|adiponectin receptor 2##AK128511|ADIPOR2|79602|adiponectin receptor 2##BC051858|ADIPOR2|79602|adiponectin receptor 2##NM_024551|ADIPOR2|79602|adiponectin receptor 2##BC048288|CACNA2D4|93589|calcium channel, voltage-dependent, alpha 2/delta subunit 4##AK301234|CACNA2D4|93589|calcium channel, voltage-dependent, alpha 2/delta subunit 4	0.995025	0.0	
chr6	3126731	3126867	reg1000341.p1	15.406	+	TSC_hg19_v1_chr6_+_3118961 AK297518 NM_004332 AK314909 AL832502 AJ617684 X81372	-7848	+	BC126254 BC126256 HQ258488 NM_003804 U50062 AK304701	-49735	+	AK314176 TSC_hg19_v1_chr6_+_3064200 AB208926	-62633	+	AY159127 CR541958 CU674602 AB528583 DQ892343 DQ895718 BC001194 TSC_hg19_v1_chr6_-_3157779 BC018780 X79535 AK308772 AK312621 NM_001069	30947	-	BT019930 CR456788 CU674662 BC063610 TSC_hg19_v1_chr6_-_3227888 AK308806 AK289433 AK297568 BC001352 NM_178012	101072	-	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	132359	+	AK297518|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##NM_004332|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AK314909|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AL832502|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AJ617684|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##X81372|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##BC126254|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##BC126256|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##HQ258488|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##NM_003804|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##U50062|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AK304701|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AK314176|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AB208926|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AY159127|TUBB2A|7280|tubulin, beta 2A class IIa##CR541958|TUBB2A|7280|tubulin, beta 2A class IIa##DQ892343|TUBB2A|7280|tubulin, beta 2A class IIa##DQ895718|TUBB2A|7280|tubulin, beta 2A class IIa##BC001194|TUBB2A|7280|tubulin, beta 2A class IIa##BC018780|TUBB2A|7280|tubulin, beta 2A class IIa##X79535|TUBB2A|7280|tubulin, beta 2A class IIa##AK312621|TUBB2A|7280|tubulin, beta 2A class IIa##NM_001069|TUBB2A|7280|tubulin, beta 2A class IIa##BT019930|TUBB2B|347733|tubulin, beta 2B class IIb##CR456788|TUBB2B|347733|tubulin, beta 2B class IIb##BC063610|TUBB2B|347733|tubulin, beta 2B class IIb##AK308806|TUBB2B|347733|tubulin, beta 2B class IIb##AK289433|TUBB2B|347733|tubulin, beta 2B class IIb##AK297568|TUBB2B|347733|tubulin, beta 2B class IIb##BC001352|TUBB2B|347733|tubulin, beta 2B class IIb##NM_178012|TUBB2B|347733|tubulin, beta 2B class IIb##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4	0.992257	0.982454	denovo_WM_7:29:0.837	CTCF.p2:-30:0.982
chr2	70314459	70314570	reg1000201.p2	15.393	+	TSC_hg19_v1_chr2_-_70314146 BC040598	-401	-	TSC_hg19_v1_chr2_-_70313405 AK056822	-1106	-	AK055994 NM_152792	-125118	-	TSC_hg19_v1_chr2_+_70314613 NM_006196	80	+	TSC_hg19_v1_chr2_+_70314696 U24223	189	+	TSC_hg19_v1_chr2_+_70314716 AK314225	204	+	BC040598|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##AK056822|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##AK055994|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_152792|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_006196|PCBP1|5093|poly(rC) binding protein 1##U24223|PCBP1|5093|poly(rC) binding protein 1##AK314225|PCBP1|5093|poly(rC) binding protein 1	0.0	0.0	
chr2	12211590	12211733	reg1000270.p2	15.390	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-324886	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-401370	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-528818	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	645592	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	646255	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	646736	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	1.974532	0.0	denovo_WM_7:41:0.235	denovo_WM_7:42:0.594
chr6	364719	364899	reg1000298.p1	15.361	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-72312	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-72724	+	None	None	None	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	26955	+	AF508547 BC101697 BC101699 NM_148959	292144	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	328281	-	AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2	1.997233	0.0	denovo_WM_7:-5:0.671	denovo_WM_7:-6:0.232	denovo_WM_7:9:0.683	denovo_WM_7:10:0.209
chr22	51058925	51059053	reg1000352.p1	15.341	+	AF218778 NM_016431	-17428	+	TSC_hg19_v1_chr22_+_51039227 AK293580 BC047527 BC009940 AK294265 BC037271 CU679535 EU832803 GQ129402	-19777	+	TSC_hg19_v1_chr22_+_51039124 AF136382 NM_012324	-19860	+	TSC_hg19_v1_chr22_-_51066581 AK092752 X52151 BX648618 BC014210 AK098659 AB448736 AK301098 AK315011 NM_000487 NM_001085425 NM_001085426 NM_001085427 NM_001085428	7545	-	AB569469 NM_001080420	54080	+	AK310316 Y00970 NM_001097 CR456366 AB587466 CU012933 CU013221	117654	+	AF218778|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##NM_016431|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##AK293580|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##BC047527|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##BC009940|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##AK294265|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##BC037271|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##EU832803|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##GQ129402|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##AF136382|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##NM_012324|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##AK092752|ARSA|410|arylsulfatase A##X52151|ARSA|410|arylsulfatase A##BX648618|ARSA|410|arylsulfatase A##BC014210|ARSA|410|arylsulfatase A##AK098659|ARSA|410|arylsulfatase A##AB448736|ARSA|410|arylsulfatase A##AK301098|ARSA|410|arylsulfatase A##AK315011|ARSA|410|arylsulfatase A##NM_000487|ARSA|410|arylsulfatase A##NM_001085425|ARSA|410|arylsulfatase A##NM_001085426|ARSA|410|arylsulfatase A##NM_001085427|ARSA|410|arylsulfatase A##NM_001085428|ARSA|410|arylsulfatase A##AB569469|SHANK3|85358|SH3 and multiple ankyrin repeat domains 3##NM_001080420|SHANK3|85358|SH3 and multiple ankyrin repeat domains 3##AK310316|ACR|49|acrosin##Y00970|ACR|49|acrosin##NM_001097|ACR|49|acrosin##CR456366|ACR|49|acrosin##CU012933|ACR|49|acrosin##CU013221|ACR|49|acrosin	0.993792	0.917091	CTCF.p2:14:0.917	denovo_WM_7:-45:0.248	denovo_WM_7:-46:0.248	denovo_WM_7:-47:0.248	denovo_WM_7:-48:0.248
chr19	40669830	40669955	reg1000267.p1	15.332	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-73080	-	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-107766	-	NM_178544 AK122968 AK292528 BC045649	-166907	+	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	27754	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	54396	-	AK023327 AK301833 NM_024877	62687	-	AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2	2.035783	0.0	denovo_WM_7:31:0.823	denovo_WM_7:46:0.709
chr20	5816672	5816805	reg1000399.p1	15.320	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	-85672	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-225151	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-521702	-	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	75388	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	114385	-	AJ439063 NM_032485 NM_182802 AK297806 BC101054 BC101055 BC101056 BC101057 BC080656 AY158211 BC005170 AK314654	114745	+	AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AJ439063|MCM8|84515|minichromosome maintenance complex component 8##NM_032485|MCM8|84515|minichromosome maintenance complex component 8##NM_182802|MCM8|84515|minichromosome maintenance complex component 8##AK297806|MCM8|84515|minichromosome maintenance complex component 8##BC101054|MCM8|84515|minichromosome maintenance complex component 8##BC101055|MCM8|84515|minichromosome maintenance complex component 8##BC101056|MCM8|84515|minichromosome maintenance complex component 8##BC101057|MCM8|84515|minichromosome maintenance complex component 8##BC080656|MCM8|84515|minichromosome maintenance complex component 8##AY158211|MCM8|84515|minichromosome maintenance complex component 8##BC005170|MCM8|84515|minichromosome maintenance complex component 8##AK314654|MCM8|84515|minichromosome maintenance complex component 8	1.712951	0.0	denovo_WM_7:8:0.902	denovo_WM_7:-24:0.239	denovo_WM_7:26:0.229
chr9	94489643	94489761	reg1000287.p1	15.319	+	TSC_hg19_v1_chr9_-_94186159 NM_005384	-303520	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	-303658	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-365503	-	TSC_hg19_v1_chr9_-_94711095 BC033697	221426	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	222687	-	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	387962	-	NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1	0.995994	0.022812	denovo_WM_7:-10:0.879
chr10	27149973	27150097	reg1000338.p3	15.316	+	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	-30	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	-96	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	-195	-	BC130453 TSC_hg19_v1_chr10_-_27389422 AB028997 AK001137 NM_014915	239349	-	AB384745 CU692788 BC019602 TSC_hg19_v1_chr10_-_27443272 AY358484 AK314372 AK291292	293172	-	TSC_hg19_v1_chr10_-_27443304 BC007795 BC023507 BC024032	293256	-	NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##BC130453|ANKRD26|22852|ankyrin repeat domain 26##AB028997|ANKRD26|22852|ankyrin repeat domain 26##AK001137|ANKRD26|22852|ankyrin repeat domain 26##NM_014915|ANKRD26|22852|ankyrin repeat domain 26##BC019602|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AY358484|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK314372|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK291292|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC007795|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC023507|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC024032|YME1L1|10730|YME1-like 1 (S. cerevisiae)	0.990196	0.0	denovo_WM_7:10:0.964
chr6	21589098	21589278	reg1000306.p1	15.316	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1054465	+	CR749285 NM_001243076	-1185155	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-1187085	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	5184	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	77471	+	BC015850 NM_000948	708541	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	1.986047	0.0	denovo_WM_7:15:0.539	denovo_WM_7:16:0.270	denovo_WM_7:30:0.329	denovo_WM_7:31:0.599
chr16	57383178	57383318	reg1000300.p1	15.314	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-64669	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-64737	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-104115	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	9462	+	AK222692 TSC_hg19_v1_chr16_+_57406382	23137	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	23191	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	0.985788	0.0	denovo_WM_7:-9:0.471	denovo_WM_7:-10:0.471
chr12	123763000	123763164	reg1000279.p1	15.312	+	DQ891281 DQ894468 BC034717 TSC_hg19_v1_chr12_-_123756363 AB006077 AF006484 NM_004642	-6589	-	NM_001143905	-44792	+	NM_152269 TSC_hg19_v1_chr12_+_123717982 BC020885 BC062329 AF061733 AK025908 NM_001194995 BC018145	-45132	+	AY364255 AB014772 BC129949 BC133704 NM_001167856 NM_018183	71903	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	86311	-	AK122703 TSC_hg19_v1_chr12_-_123849766	86683	-	DQ891281|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##DQ894468|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##BC034717|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AB006077|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AF006484|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##NM_004642|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##NM_001143905|C12orf65|91574|chromosome 12 open reading frame 65##NM_152269|C12orf65|91574|chromosome 12 open reading frame 65##BC020885|C12orf65|91574|chromosome 12 open reading frame 65##BC062329|C12orf65|91574|chromosome 12 open reading frame 65##AF061733|C12orf65|91574|chromosome 12 open reading frame 65##AK025908|C12orf65|91574|chromosome 12 open reading frame 65##NM_001194995|C12orf65|91574|chromosome 12 open reading frame 65##BC018145|C12orf65|91574|chromosome 12 open reading frame 65##AY364255|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AB014772|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC129949|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC133704|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_001167856|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_018183|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK122703|SBNO1|55206|strawberry notch homolog 1 (Drosophila)	0.999859	0.0	
chr22	41252874	41253025	reg1000192.p1	15.312	+	TSC_hg19_v1_chr22_-_41252691 NM_003932	-259	-	TSC_hg19_v1_chr22_-_41252646 CR456586	-293	-	TSC_hg19_v1_chr22_-_41252644 AK303530 AK130770	-309	-	TSC_hg19_v1_chr22_+_41253101 NM_001204827 NM_022098 AK301635 BX648018 BC037424 AL365514 BC005331 BC001681 BC004989 AX721172 AK313770 AL834310 CR456442 BC001208 BC023654 BC045166 BC053556 BC011632 AB527238 CR457396 CU013040 CU013328 CU674830	171	+	AB528124 CU013018 CU013306 CR456468 BC112135 AF085232 NM_145174	5114	-	TSC_hg19_v1_chr22_+_41347364 NM_014248	94399	+	NM_003932|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##CR456586|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AK303530|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##AK130770|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##NM_001204827|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_022098|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK301635|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BX648018|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC037424|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL365514|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC005331|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001681|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC004989|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK313770|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL834310|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR456442|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001208|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC023654|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC045166|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC053556|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC011632|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR457396|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CU013018|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CU013306|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CR456468|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##BC112135|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##AF085232|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_145174|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_014248|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase	0.998462	0.703518	denovo_WM_7:29:0.229	denovo_WM_7:30:0.229	denovo_WM_7:31:0.229	denovo_WM_7:32:0.229	CTCF.p2:-44:0.704
chr19	18291825	18291990	reg1000308.p3	15.307	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-7266	+	TSC_hg19_v1_chr19_+_18284622 BC021136 BC031020 AF097362	-7286	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	-7316	+	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	12128	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	22897	-	NM_001098819 U88712	43395	-	DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##BC021136|IFI30|10437|interferon, gamma-inducible protein 30##BC031020|IFI30|10437|interferon, gamma-inducible protein 30##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	1.330339	0.034873	denovo_WM_7:8:0.228	denovo_WM_7:23:0.226
chr1	108757386	108757529	reg1000330.p1	15.293	+	TSC_hg19_v1_chr1_+_108742987 AK130480	-14448	+	TSC_hg19_v1_chr1_-_108742975 AK304165 NM_013386	-14472	-	TSC_hg19_v1_chr1_-_108742938 AK316304	-14532	-	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	29225	-	NM_001143987 NM_001143988 BC125161 BC125162	235465	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	345585	+	AK304165|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_013386|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK316304|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B	0.993149	0.043683	denovo_WM_7:-12:0.904
chr6	63008800	63008931	reg1000228.p1	15.271	+	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	-12864	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-4721186	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-5826450	+	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	1020999	-	TSC_hg19_v1_chr6_+_64231650 CR749458	1222790	+	TSC_hg19_v1_chr6_+_64281913 BC045571 NM_003463	1273051	+	AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC045571|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##NM_003463|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.997266	0.0	denovo_WM_7:5:0.816
chr7	102398807	102398942	reg1000289.p1	15.271	+	TSC_hg19_v1_chr7_+_102389473 NM_001145268 NM_001145269 BC029175 AK297455 AK298753 AK054745 DQ893359 DQ896678	-9384	+	BC056864 BC071870 TSC_hg19_v1_chr7_-_102312111 BC044209 BC050598 BC110985 BC086857 NM_032959	-86754	-	AK302217 NM_001031618 NM_001166339	-108103	+	NM_001031692 NM_005824 TSC_hg19_v1_chr7_+_102553446 AK226021 AK225701 U32907 AK290305 BC027903 AY358889	154558	+	AK097537 NM_145032	316140	-	AY359238 AY359239 AK095387 BC031285 BC026121 NM_001111038	316355	-	NM_001145268|FAM185A|222234|family with sequence similarity 185, member A##NM_001145269|FAM185A|222234|family with sequence similarity 185, member A##BC029175|FAM185A|222234|family with sequence similarity 185, member A##AK297455|FAM185A|222234|family with sequence similarity 185, member A##AK298753|FAM185A|222234|family with sequence similarity 185, member A##AK054745|FAM185A|222234|family with sequence similarity 185, member A##DQ893359|FAM185A|222234|family with sequence similarity 185, member A##DQ896678|FAM185A|222234|family with sequence similarity 185, member A##BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC086857|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_032959|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##NM_001031692|LRRC17|10234|leucine rich repeat containing 17##NM_005824|LRRC17|10234|leucine rich repeat containing 17##AK226021|LRRC17|10234|leucine rich repeat containing 17##AK225701|LRRC17|10234|leucine rich repeat containing 17##U32907|LRRC17|10234|leucine rich repeat containing 17##AK290305|LRRC17|10234|leucine rich repeat containing 17##BC027903|LRRC17|10234|leucine rich repeat containing 17##AY358889|LRRC17|10234|leucine rich repeat containing 17##AK097537|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_145032|FBXL13|222235|F-box and leucine-rich repeat protein 13##AY359238|FBXL13|222235|F-box and leucine-rich repeat protein 13##AY359239|FBXL13|222235|F-box and leucine-rich repeat protein 13##AK095387|FBXL13|222235|F-box and leucine-rich repeat protein 13##BC031285|FBXL13|222235|F-box and leucine-rich repeat protein 13##BC026121|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_001111038|FBXL13|222235|F-box and leucine-rich repeat protein 13	1.997456	0.99596	denovo_WM_7:8:0.425	denovo_WM_7:9:0.291	denovo_WM_7:24:0.293	denovo_WM_7:25:0.428	CTCF.p2:-35:0.996
chrX	40974477	40974590	reg1000351.p1	15.263	+	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	-29661	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-379404	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-379553	-	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	218117	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	218924	+	AK304661 TSC_hg19_v1_chrX_+_41193866 AK127902	219332	+	NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304661|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK127902|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	1.97779	0.99726	CTCF.p2:-3:0.997	denovo_WM_7:-32:0.517	denovo_WM_7:-50:0.772
chr19	2607997	2608177	reg1000278.p1	15.257	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-131849	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-151127	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-151151	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	94608	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	94655	-	AK124445 TSC_hg19_v1_chr19_-_2717420	109262	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	1.961401	0.0	denovo_WM_7:16:0.840	denovo_WM_7:-27:0.304	denovo_WM_7:-28:0.304	denovo_WM_7:-29:0.304
chr2	97197978	97198130	reg1000258.p1	15.239	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-196518	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-196578	+	NM_178495 NM_001163524 BC034503	-206106	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	4431	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	105965	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	106013	-	BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	0.994771	0.0	denovo_WM_7:15:0.736
chr11	111802647	111802785	reg1000403.p1	15.221	+	TSC_hg19_v1_chr11_+_111789658 AK057948	-13056	+	NM_080659 BC008501 TSC_hg19_v1_chr11_+_111789636	-13098	+	BC110872 TSC_hg19_v1_chr11_+_111783490 D89617 BC109393 AB587583 CR457408	-19202	+	TSC_hg19_v1_chr11_+_111807932 DQ642016 NM_001037954	5192	+	TSC_hg19_v1_chr11_+_111808066 BC035509 BC064479 BC128600	5367	+	TSC_hg19_v1_chr11_+_111848069 NM_033425 AK289807 BC033034 AB051522	45350	+	AK057948|C11orf52|91894|chromosome 11 open reading frame 52##NM_080659|C11orf52|91894|chromosome 11 open reading frame 52##BC008501|C11orf52|91894|chromosome 11 open reading frame 52##BC110872|HSPB2-C11orf52|100528019|HSPB2-C11orf52 readthrough (non-protein coding)##D89617|HSPB2|3316|heat shock 27kDa protein 2##BC109393|HSPB2|3316|heat shock 27kDa protein 2##CR457408|HSPB2|3316|heat shock 27kDa protein 2##DQ642016|DIXDC1|85458|DIX domain containing 1##NM_001037954|DIXDC1|85458|DIX domain containing 1##BC035509|DIXDC1|85458|DIX domain containing 1##BC064479|DIXDC1|85458|DIX domain containing 1##BC128600|DIXDC1|85458|DIX domain containing 1##NM_033425|DIXDC1|85458|DIX domain containing 1##AK289807|DIXDC1|85458|DIX domain containing 1##BC033034|DIXDC1|85458|DIX domain containing 1##AB051522|DIXDC1|85458|DIX domain containing 1	0.998839	0.904759	CTCF.p2:-16:0.905
chr3	32558003	32558132	reg1000397.p1	15.202	+	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	-13687	-	TSC_hg19_v1_chr3_-_32544335 AK000403	-13734	-	CR457231 TSC_hg19_v1_chr3_-_32544290	-13795	-	BX649189 TSC_hg19_v1_chr3_-_32612288 AK222573 AK222653 BC131620 AF078849 AK074348 AK293253 NM_016141	54207	-	TSC_hg19_v1_chr3_+_32726700 AK023227 AK022952 NM_015442 AK309670 BC006382 BC002931 BC002928 AK297085 AK298693 CU678296 CU678298 DQ892895 DQ896143 EU831494 EU831581	168738	+	DQ232881 NM_001039111	301442	+	BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BX649189|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK222573|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK222653|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##BC131620|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AF078849|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK074348|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK293253|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##NM_016141|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK023227|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK022952|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##NM_015442|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK309670|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC006382|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002931|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002928|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK297085|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK298693|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ892895|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ896143|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831494|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831581|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ232881|TRIM71|131405|tripartite motif containing 71##NM_001039111|TRIM71|131405|tripartite motif containing 71	1.988174	0.0	denovo_WM_7:-18:0.853	denovo_WM_7:-33:0.717	denovo_WM_7:-34:0.266
chr17	38771667	38771824	reg1000318.p1	15.199	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-50027	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-113899	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-171926	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	32325	-	BC069196 TSC_hg19_v1_chr17_-_38804818	33051	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	49605	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	0.993834	0.098214	denovo_WM_7:9:0.970
chr19	40649621	40649801	reg1000310.p1	15.188	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-52899	-	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-87585	-	NM_178544 AK122968 AK292528 BC045649	-146726	+	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	47935	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	74577	-	AK023327 AK301833 NM_024877	82868	-	AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2	0.999819	0.0	
chr1	28736357	28736504	reg1000405.p1	15.182	+	TSC_hg19_v1_chr1_+_28696251 NM_001048183 CR749449 AK025436 BC029266 BC016152 BC068508	-40205	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	-80883	+	TSC_hg19_v1_chr1_+_28586034 NM_031459 BC013304 AY123223 BC033719 AL136551 AK315710 DQ892827 DQ896073 EU831582 EU831667 AB529110 CU680558	-150272	+	NM_023923 BC021247	28240	+	NM_001048199 TSC_hg19_v1_chr1_+_28832500	96068	+	TSC_hg19_v1_chr1_+_28832555 AJ006834 AJ006835 X06130 BC012122 BC065008 BC007300 BC036903 BC006790 BC017334	96152	+	NM_001048183|PHACTR4|65979|phosphatase and actin regulator 4##CR749449|PHACTR4|65979|phosphatase and actin regulator 4##AK025436|PHACTR4|65979|phosphatase and actin regulator 4##BC029266|PHACTR4|65979|phosphatase and actin regulator 4##BC016152|PHACTR4|65979|phosphatase and actin regulator 4##BC068508|PHACTR4|65979|phosphatase and actin regulator 4##NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18##NM_031459|SESN2|83667|sestrin 2##BC013304|SESN2|83667|sestrin 2##AY123223|SESN2|83667|sestrin 2##BC033719|SESN2|83667|sestrin 2##AL136551|SESN2|83667|sestrin 2##AK315710|SESN2|83667|sestrin 2##DQ892827|SESN2|83667|sestrin 2##DQ896073|SESN2|83667|sestrin 2##EU831582|SESN2|83667|sestrin 2##EU831667|SESN2|83667|sestrin 2##NM_023923|PHACTR4|65979|phosphatase and actin regulator 4##BC021247|PHACTR4|65979|phosphatase and actin regulator 4##NM_001048199|RCC1|1104|regulator of chromosome condensation 1##AJ006834|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##AJ006835|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC012122|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC065008|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC006790|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC017334|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)	1.988376	0.951326	CTCF.p2:6:0.951	denovo_WM_7:39:0.330	denovo_WM_7:40:0.264	denovo_WM_7:57:0.265	denovo_WM_7:58:0.331
chr1	67798911	67799091	reg1000284.p1	15.174	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-25438	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-25920	+	AF461422 NM_144701	-166833	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	97022	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	97071	-	TSC_hg19_v1_chr1_-_67896086 AK312256	97084	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.999894	0.0	denovo_WM_7:79:0.230	denovo_WM_7:80:0.230	denovo_WM_7:81:0.230	denovo_WM_7:82:0.230
chr6	110116201	110116371	reg1000303.p1	15.147	+	TSC_hg19_v1_chr6_+_110012521 AK222732	-103762	+	TSC_hg19_v1_chr6_+_110012514 AK291671 AK293422 D87464	-103778	+	NM_014845 TSC_hg19_v1_chr6_+_110012488 BC041338	-103830	+	BC126301 BC117298 BC043414 NM_005284 HQ258210 HQ258216 HQ709190 HQ709191	183970	+	TSC_hg19_v1_chr6_-_110500864 BC019019 BC021022 BC044591 AK097838 BC068546	384557	-	TSC_hg19_v1_chr6_-_110501166 NM_001024934 NM_001024935 NM_001024936 NM_003931	384899	-	AK222732|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##AK291671|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##AK293422|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##D87464|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##NM_014845|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##BC041338|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##BC126301|GPR6|2830|G protein-coupled receptor 6##BC117298|GPR6|2830|G protein-coupled receptor 6##BC043414|GPR6|2830|G protein-coupled receptor 6##NM_005284|GPR6|2830|G protein-coupled receptor 6##HQ258210|GPR6|2830|G protein-coupled receptor 6##HQ258216|GPR6|2830|G protein-coupled receptor 6##HQ709190|GPR6|2830|G protein-coupled receptor 6##BC044591|WASF1|8936|WAS protein family, member 1##AK097838|WASF1|8936|WAS protein family, member 1##BC068546|WASF1|8936|WAS protein family, member 1##NM_001024934|WASF1|8936|WAS protein family, member 1##NM_001024935|WASF1|8936|WAS protein family, member 1##NM_001024936|WASF1|8936|WAS protein family, member 1##NM_003931|WASF1|8936|WAS protein family, member 1	1.996943	0.0	
chr11	63997826	63997967	reg1000335.p2	15.126	+	BC044584 BC053947 NM_005528	-144	+	TSC_hg19_v1_chr11_+_63993745 NM_001128612 NM_001128613 NM_032344 AF370402 BC006129 AK308555	-4130	+	TSC_hg19_v1_chr11_-_63993653 BC005133 AY211494 AK026364 NM_001033678 NM_001160389 NM_001160390 NM_001160392 NM_031472	-4253	-	TSC_hg19_v1_chr11_+_63998024 BC057849 BC010145 BC032137 AF036874 CU692210 BC051008	265	+	TSC_hg19_v1_chr11_+_64002055 NM_001243733 NM_003377 BC008818 DQ892633 DQ895870 DQ895872 U52819 U48801 AB590381 U43368 U43369	4243	+	NM_004470 TSC_hg19_v1_chr11_+_64008448	10560	+	BC044584|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC053947|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##NM_005528|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##NM_001128612|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##NM_001128613|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##NM_032344|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##BC006129|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##AK308555|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##BC005133|TRPT1|83707|tRNA phosphotransferase 1##AY211494|TRPT1|83707|tRNA phosphotransferase 1##AK026364|TRPT1|83707|tRNA phosphotransferase 1##NM_001033678|TRPT1|83707|tRNA phosphotransferase 1##NM_001160389|TRPT1|83707|tRNA phosphotransferase 1##NM_001160390|TRPT1|83707|tRNA phosphotransferase 1##NM_001160392|TRPT1|83707|tRNA phosphotransferase 1##NM_031472|TRPT1|83707|tRNA phosphotransferase 1##BC057849|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC010145|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC032137|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##AF036874|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC051008|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##NM_001243733|VEGFB|7423|vascular endothelial growth factor B##NM_003377|VEGFB|7423|vascular endothelial growth factor B##BC008818|VEGFB|7423|vascular endothelial growth factor B##DQ892633|VEGFB|7423|vascular endothelial growth factor B##DQ895870|VEGFB|7423|vascular endothelial growth factor B##DQ895872|VEGFB|7423|vascular endothelial growth factor B##U52819|VEGFB|7423|vascular endothelial growth factor B##U48801|VEGFB|7423|vascular endothelial growth factor B##U43368|VEGFB|7423|vascular endothelial growth factor B##U43369|VEGFB|7423|vascular endothelial growth factor B##NM_004470|FKBP2|2286|FK506 binding protein 2, 13kDa	0.988836	0.0	denovo_WM_7:-4:0.310	denovo_WM_7:-5:0.311	denovo_WM_7:-6:0.367
chr16	28503615	28503780	reg1000327.p2	15.126	+	NM_001042432	-75	-	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	-457	-	BC157842 AK292155 NM_001199142	-65979	-	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	2265	+	AY099296 CU687548 BC062422 NM_145659	14445	-	AB463938 BT006896 CR542144 TSC_hg19_v1_chr16_-_28550296 BC002434 AK312135 AF135266	46575	-	NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor##AY099296|IL27|246778|interleukin 27##BC062422|IL27|246778|interleukin 27##NM_145659|IL27|246778|interleukin 27##BT006896|NUPR1|26471|nuclear protein, transcriptional regulator, 1##CR542144|NUPR1|26471|nuclear protein, transcriptional regulator, 1##BC002434|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AK312135|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AF135266|NUPR1|26471|nuclear protein, transcriptional regulator, 1	0.998461	0.0	
chr19	38625343	38625466	reg1000379.p1	15.105	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-227492	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-227547	+	AK302913 AY026504 AK128826 NM_031951	-228130	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	89431	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	94912	-	TSC_hg19_v1_chr19_-_38720336 AK297581	94930	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	1.044806	0.019747	
chr11	118754408	118754543	reg1000314.p1	15.085	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-92541	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-92596	-	TSC_hg19_v1_chr11_-_118661860 BC026228	-92616	-	AK291512 NM_001716 BC110352 X68149 AB464488	85	+	NM_032966 X68829	9625	+	AB094091 NM_182557	27137	-	NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC026228|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like	1.057707	0.0	denovo_WM_7:3:0.277	denovo_WM_7:4:0.714
chr12	4381165	4381289	reg1000245.p2	15.078	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-398727	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-518845	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-518959	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	1817	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	49164	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	107573	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	1.991827	0.0	denovo_WM_7:-10:0.563	denovo_WM_7:-11:0.431	denovo_WM_7:-25:0.485	denovo_WM_7:-26:0.512
chr8	37731362	37731508	reg1000345.p1	15.075	+	TSC_hg19_v1_chr8_-_37727937 AK026177	-3485	-	NM_018310 TSC_hg19_v1_chr8_-_37707430 AK294337	-23991	-	TSC_hg19_v1_chr8_-_37707395 AK315420 BC010648 AK001914 AF206673	-24049	-	AY280968 DQ083995 AF368294 DQ236342 BC077720 BC054881 TSC_hg19_v1_chr8_-_37757016 AK291781 AK026275 NM_001002814 NM_025151	25566	-	BC029504 NM_152413	66211	-	S53291 TSC_hg19_v1_chr8_-_37822825	91384	-	AK026177|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_018310|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK294337|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK315420|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##BC010648|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK001914|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AF206673|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AY280968|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ083995|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AF368294|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ236342|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC077720|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC054881|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK291781|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK026275|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_001002814|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_025151|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC029504|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##NM_152413|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##S53291|ADRB3|155|adrenergic, beta-3-, receptor	0.0	0.0	
chr19	36419541	36419721	reg1000277.p2	15.061	+	TSC_hg19_v1_chr19_-_36399212 NM_001173514 NM_001173515 NM_003332 NM_198125	-20418	-	TSC_hg19_v1_chr19_-_36399198 AF019562 BC011175 AK290385	-20439	-	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	-20481	-	BC003578 NM_024509	8390	+	TSC_hg19_v1_chr19_+_36486091 NM_001042631 BC007205 BC064605 BC069054 BC137516 BC137517	66463	+	CU690916 AK093764 AX748293 NM_001039876 BC052573 BC038360	80007	-	NM_001173514|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_001173515|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_003332|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_198125|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC003578|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_024509|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_001042631|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC007205|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC064605|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC069054|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137516|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137517|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##AK093764|C19orf46|163183|chromosome 19 open reading frame 46##NM_001039876|C19orf46|163183|chromosome 19 open reading frame 46##BC052573|C19orf46|163183|chromosome 19 open reading frame 46##BC038360|C19orf46|163183|chromosome 19 open reading frame 46	0.847483	0.0	denovo_WM_7:28:0.660
chr2	62115922	62116059	reg1000257.p1	15.059	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-204	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-256	-	AK129860 TSC_hg19_v1_chr2_-_62115719 AK295330	-272	-	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	16839	+	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	307276	+	BC047439 AK091902 AX747245 NM_198276	617549	-	AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK129860|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK295330|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17	0.982531	0.0	
chr3	47830644	47830765	reg1000297.p1	15.035	+	TSC_hg19_v1_chr3_-_47823419 AK302541	-7197	-	TSC_hg19_v1_chr3_-_47823394 BC012101 NM_003074	-7307	-	TSC_hg19_v1_chr3_-_47823378 BC032564	-7327	-	BC047335 NM_014966 NM_138615 TSC_hg19_v1_chr3_+_47844624 BC028405 AK291266	13807	+	AK096791 TSC_hg19_v1_chr3_+_47844627 BC020126 BC038417 BC015029 AB020697 BC063510	13952	+	TSC_hg19_v1_chr3_+_47866475 AK002076	35784	+	AK302541|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC012101|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##NM_003074|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC032564|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC047335|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##NM_014966|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##NM_138615|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC028405|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK291266|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK096791|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC020126|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC038417|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC015029|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AB020697|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC063510|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK002076|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30	0.999312	0.057326	denovo_WM_7:-14:0.392
chr19	11074347	11074510	reg1000346.p2	15.031	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-2604	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-2678	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-2713	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	20448	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	125649	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	125704	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	0.998451	0.0	denovo_WM_7:23:0.494	denovo_WM_7:24:0.494
chr16	2190723	2190833	reg1000339.p1	15.030	+	U24497 TSC_hg19_v1_chr16_-_2185898 L33243 NM_000296 NM_001009944	-4879	-	AB209025 TSC_hg19_v1_chr16_-_2159898	-30900	-	TSC_hg19_v1_chr16_+_2128185 AK125096	-62566	+	TSC_hg19_v1_chr16_+_2198609 AY646153 BC066913 NM_014353	7850	+	TSC_hg19_v1_chr16_+_2198707 BC007681	7967	+	TSC_hg19_v1_chr16_+_2205783 AK090624 AX746540 NM_032271	15003	+	U24497|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##L33243|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_000296|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_001009944|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AB209025|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AK125096|TSC2|7249|tuberous sclerosis 2##AY646153|RAB26|25837|RAB26, member RAS oncogene family##BC066913|RAB26|25837|RAB26, member RAS oncogene family##NM_014353|RAB26|25837|RAB26, member RAS oncogene family##BC007681|RAB26|25837|RAB26, member RAS oncogene family##AK090624|TRAF7|84231|TNF receptor-associated factor 7##NM_032271|TRAF7|84231|TNF receptor-associated factor 7	1.964275	0.908522	CTCF.p2:-7:0.909	denovo_WM_7:-41:0.584	denovo_WM_7:-44:0.310	denovo_WM_7:-62:0.953
chr20	278064	278198	reg1000337.p1	15.030	+	AK302223 TSC_hg19_v1_chr20_-_271367 BC134417 BC137450 BC144648 BC144649 AK097394 NM_080571 NM_153269	-6767	-	TSC_hg19_v1_chr20_-_271080 AK091924 AX747257 AK304526 BX640715 BC051762	-7057	-	AY358708 EF426755 NM_207469 BC137292 BC137293 AF525932 AY621329	-39734	+	TSC_hg19_v1_chr20_+_278213 BC069238 NM_033089 AK025768 BC107584 BC036469	78	+	TSC_hg19_v1_chr20_+_306226 BC067361 NM_006943 U35612 BC028103	28105	+	TSC_hg19_v1_chr20_+_327371 NM_024958 AK290527	49274	+	AK302223|C20orf96|140680|chromosome 20 open reading frame 96##BC134417|C20orf96|140680|chromosome 20 open reading frame 96##BC137450|C20orf96|140680|chromosome 20 open reading frame 96##BC144648|C20orf96|140680|chromosome 20 open reading frame 96##BC144649|C20orf96|140680|chromosome 20 open reading frame 96##AK097394|C20orf96|140680|chromosome 20 open reading frame 96##NM_080571|C20orf96|140680|chromosome 20 open reading frame 96##NM_153269|C20orf96|140680|chromosome 20 open reading frame 96##AK091924|C20orf96|140680|chromosome 20 open reading frame 96##AK304526|C20orf96|140680|chromosome 20 open reading frame 96##BX640715|C20orf96|140680|chromosome 20 open reading frame 96##BC051762|C20orf96|140680|chromosome 20 open reading frame 96##AY358708|DEFB132|400830|defensin, beta 132##EF426755|DEFB132|400830|defensin, beta 132##NM_207469|DEFB132|400830|defensin, beta 132##BC137292|DEFB132|400830|defensin, beta 132##BC137293|DEFB132|400830|defensin, beta 132##AF525932|DEFB132|400830|defensin, beta 132##AY621329|DEFB132|400830|defensin, beta 132##BC069238|ZCCHC3|85364|zinc finger, CCHC domain containing 3##NM_033089|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK025768|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC107584|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC036469|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC067361|SOX12|6666|SRY (sex determining region Y)-box 12##NM_006943|SOX12|6666|SRY (sex determining region Y)-box 12##U35612|SOX12|6666|SRY (sex determining region Y)-box 12##BC028103|SOX12|6666|SRY (sex determining region Y)-box 12##NM_024958|NRSN2|80023|neurensin 2##AK290527|NRSN2|80023|neurensin 2	0.996636	0.0	denovo_WM_7:0:0.985
chr16	67358986	67359139	reg1000402.p1	15.025	+	TSC_hg19_v1_chr16_+_67313455 BC063501 NM_001129729 NM_001129731 BC054486	-45620	+	AK308298 TSC_hg19_v1_chr16_+_67313229	-45877	+	TSC_hg19_v1_chr16_+_67312980 NM_001129728	-46048	+	BC070103 BC094790 AK302748 AK302567 BC117335 NM_001100915 AK097481	1582	-	TSC_hg19_v1_chr16_+_67360728 AY963267 BC026156 NM_018296 BC018031	1690	+	AK311487 NM_001161575 AK297329 AK309897 AK001866 AK292311 AY313780 AK301766	22216	+	BC063501|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##NM_001129729|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##NM_001129731|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##BC054486|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##AK308298|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##NM_001129728|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##BC070103|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC094790|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK302748|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK302567|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC117335|KCTD19|146212|potassium channel tetramerisation domain containing 19##NM_001100915|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK097481|KCTD19|146212|potassium channel tetramerisation domain containing 19##AY963267|LRRC36|55282|leucine rich repeat containing 36##BC026156|LRRC36|55282|leucine rich repeat containing 36##NM_018296|LRRC36|55282|leucine rich repeat containing 36##BC018031|LRRC36|55282|leucine rich repeat containing 36##AK311487|LRRC36|55282|leucine rich repeat containing 36##NM_001161575|LRRC36|55282|leucine rich repeat containing 36##AK297329|LRRC36|55282|leucine rich repeat containing 36##AK309897|LRRC36|55282|leucine rich repeat containing 36##AK001866|LRRC36|55282|leucine rich repeat containing 36##AK292311|LRRC36|55282|leucine rich repeat containing 36##AY313780|LRRC36|55282|leucine rich repeat containing 36##AK301766|LRRC36|55282|leucine rich repeat containing 36	2.513774	0.0	denovo_WM_7:40:0.555	denovo_WM_7:56:0.823
chr1	9352884	9352993	reg1000211.p4	14.994	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	-1	+	CR749282 TSC_hg19_v1_chr1_+_9299950	-53000	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	-58021	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	31	+	TSC_hg19_v1_chr1_+_9415945 CU677397	63008	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	246594	+	AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33	0.880851	0.0	denovo_WM_7:-26:0.863
chrX	19352441	19352587	reg1000469.p1	14.985	+	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	-211847	-	TSC_hg19_v1_chrX_-_19002476 NM_000292	-350052	-	NM_006240 NM_152224 NM_152226 X97867 AK292235 BC036026	-643470	+	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	9568	+	NM_001001671	180864	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	336542	-	BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64##NM_000292|PHKA2|5256|phosphorylase kinase, alpha 2 (liver)##NM_006240|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152224|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152226|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##X97867|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##AK292235|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##BC036026|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.995088	0.0	
chr20	34026959	34027072	reg1000332.p1	14.971	+	AB593125 U13660 NM_000557	-1025	-	TSC_hg19_v1_chr20_-_33999791 AK225281 AK293149 BC119013 BC122862 AY050659 NM_001184977 NM_018244 NM_199487	-27153	-	BC008871 AB528278 AM392884 AM393853 TSC_hg19_v1_chr20_-_33999777 AK001712 AK022650 AK022742 AK225557 AK293516 AK300130 AK302133 AK308819 BC105791	-27246	-	TSC_hg19_v1_chr20_+_34042987 AK307861 AB621828 AF049105 NM_007186	16059	+	AK058089 AK310337 NM_001145350	90448	-	NM_015966 NM_198398 TSC_hg19_v1_chr20_+_34129827 AF308298 AF077030 AF151812 EF206690 BC014014	102787	+	AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5##AK225281|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293149|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC119013|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC122862|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AY050659|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_001184977|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_018244|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_199487|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC008871|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM392884|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM393853|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK001712|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022650|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022742|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225557|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293516|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK300130|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK302133|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK308819|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC105791|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK307861|CEP250|11190|centrosomal protein 250kDa##AF049105|CEP250|11190|centrosomal protein 250kDa##NM_007186|CEP250|11190|centrosomal protein 250kDa##AK058089|C20orf173|140873|chromosome 20 open reading frame 173##AK310337|C20orf173|140873|chromosome 20 open reading frame 173##NM_001145350|C20orf173|140873|chromosome 20 open reading frame 173##NM_015966|ERGIC3|51614|ERGIC and golgi 3##NM_198398|ERGIC3|51614|ERGIC and golgi 3##AF308298|ERGIC3|51614|ERGIC and golgi 3##AF077030|ERGIC3|51614|ERGIC and golgi 3##AF151812|ERGIC3|51614|ERGIC and golgi 3##EF206690|ERGIC3|51614|ERGIC and golgi 3##BC014014|ERGIC3|51614|ERGIC and golgi 3	0.999365	0.034602	
chr10	38679779	38679908	reg1000323.p1	14.969	+	AK295332 AY829267 AF165514 AF165517 BC071987 TSC_hg19_v1_chr10_+_38645320 AK293968 AK307174 CU687208	-34506	+	TSC_hg19_v1_chr10_+_38383292 NM_001007094 NM_001178101 NM_003421 AK092012 AX747310 BX647089 AJ492195 BC015858	-296560	+	TSC_hg19_v1_chr10_+_38299631 NM_006954 NM_006974 AK303445 AK292844 BC017760 AK027057 D31763	-380248	+	TSC_hg19_v1_chr10_-_38691741 BC171738 BC042387 BC048143	11913	-	TSC_hg19_v1_chr10_-_42863441 AF519622 AK131313	4183620	-	AX721135 TSC_hg19_v1_chr10_-_43048257 AK308832 AK026980 BC045697 AX721116	4368359	-	AK295332|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AY829267|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AF165514|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AF165517|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##BC071987|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AK293968|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AK307174|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##NM_001007094|ZNF37A|7587|zinc finger protein 37A##NM_001178101|ZNF37A|7587|zinc finger protein 37A##NM_003421|ZNF37A|7587|zinc finger protein 37A##AK092012|ZNF37A|7587|zinc finger protein 37A##BX647089|ZNF37A|7587|zinc finger protein 37A##AJ492195|ZNF37A|7587|zinc finger protein 37A##BC015858|ZNF37A|7587|zinc finger protein 37A##NM_006954|ZNF33A|7581|zinc finger protein 33A##NM_006974|ZNF33A|7581|zinc finger protein 33A##AK303445|ZNF33A|7581|zinc finger protein 33A##AK292844|ZNF33A|7581|zinc finger protein 33A##BC017760|ZNF33A|7581|zinc finger protein 33A##AK027057|ZNF33A|7581|zinc finger protein 33A##D31763|ZNF33A|7581|zinc finger protein 33A##BC171738|SEPT7L|285961|septin 7-like##BC042387|SEPT7L|285961|septin 7-like##BC048143|SEPT7L|285961|septin 7-like##AF519622|LOC441666|441666|zinc finger protein 91 pseudogene##AK308832|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##AK026980|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##BC045697|ZNF37BP|100129482|zinc finger protein 37B, pseudogene	0.993606	0.046519	
chr20	30048418	30048537	reg1000340.p2	14.966	+	AY122475 NM_153324 AY358859 AY501002 BC126365 BC126391 AF479701	-20022	+	NM_001171832	-47837	-	HQ258031 AY501000 BC130607 BC130609 NM_001011878	-54466	-	DQ119827 NM_001037500 AB528811	12339	-	AK313060 BC039813 NM_014012 AF152863	14622	+	TSC_hg19_v1_chr20_+_30102254 NM_030789 NM_178580 NM_178581 NM_178582 AK314410 BC008938 BC008959 AY169310 AY169311 AY169312 AK075283 DQ168450	53771	+	AY122475|DEFB123|245936|defensin, beta 123##NM_153324|DEFB123|245936|defensin, beta 123##AY358859|DEFB123|245936|defensin, beta 123##BC126365|DEFB123|245936|defensin, beta 123##BC126391|DEFB123|245936|defensin, beta 123##AF479701|DEFB123|245936|defensin, beta 123##NM_001171832|DEFB121|245934|defensin, beta 121##HQ258031|DEFB121|245934|defensin, beta 121##AY501000|DEFB121|245934|defensin, beta 121##BC130607|DEFB121|245934|defensin, beta 121##BC130609|DEFB121|245934|defensin, beta 121##NM_001011878|DEFB121|245934|defensin, beta 121##DQ119827|DEFB124|245937|defensin, beta 124##NM_001037500|DEFB124|245937|defensin, beta 124##AK313060|REM1|28954|RAS (RAD and GEM)-like GTP-binding 1##BC039813|REM1|28954|RAS (RAD and GEM)-like GTP-binding 1##NM_014012|REM1|28954|RAS (RAD and GEM)-like GTP-binding 1##AF152863|REM1|28954|RAS (RAD and GEM)-like GTP-binding 1##NM_030789|HM13|81502|histocompatibility (minor) 13##NM_178580|HM13|81502|histocompatibility (minor) 13##NM_178581|HM13|81502|histocompatibility (minor) 13##NM_178582|HM13|81502|histocompatibility (minor) 13##AK314410|HM13|81502|histocompatibility (minor) 13##BC008938|HM13|81502|histocompatibility (minor) 13##BC008959|HM13|81502|histocompatibility (minor) 13##AY169310|HM13|81502|histocompatibility (minor) 13##AY169311|HM13|81502|histocompatibility (minor) 13##AY169312|HM13|81502|histocompatibility (minor) 13##AK075283|HM13|81502|histocompatibility (minor) 13##DQ168450|HM13|81502|histocompatibility (minor) 13	0.99689	0.223004	CTCF.p2:-8:0.223
chr12	11721945	11722098	reg1000355.p4	14.938	+	BC044827 NM_006248	-173530	-	BC044827 K03205 K03206 BC141917 K03204 NM_005039 NM_199353 NM_199354 AX772842	-213505	-	BC130386 BC035362 K03207 NM_002723 BC128191	-258661	-	TSC_hg19_v1_chr12_+_11802659 AK289441	80652	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	80753	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	80965	+	BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_006248|PRB2|653247|proline-rich protein BstNI subfamily 2##BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##K03205|PRB1|5542|proline-rich protein BstNI subfamily 1##K03206|PRB1|5542|proline-rich protein BstNI subfamily 1##BC141917|PRB1|5542|proline-rich protein BstNI subfamily 1##K03204|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_005039|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199353|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199354|PRB1|5542|proline-rich protein BstNI subfamily 1##BC130386|PRB4|5545|proline-rich protein BstNI subfamily 4##BC035362|PRB4|5545|proline-rich protein BstNI subfamily 4##K03207|PRB4|5545|proline-rich protein BstNI subfamily 4##NM_002723|PRB4|5545|proline-rich protein BstNI subfamily 4##BC128191|PRB4|5545|proline-rich protein BstNI subfamily 4##AK289441|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6	0.990149	0.0	
chr1	172711892	172712016	reg1000329.p1	14.936	+	D38122 AK314874 NM_000639 X89102 BC017502 U08137 AF288573 U11821 AB528416 DQ893466 DQ896147 CU675998 AY225406 AY858799	-83705	+	TSC_hg19_v1_chr1_+_172502291 NM_016227 AK302509 AL035291 BC137125 BC144487	-209573	+	TSC_hg19_v1_chr1_+_172502152 AK302949 AJ250075 NM_014283	-209812	+	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	308102	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	462699	-	CR542033 D90224 X79929 NM_003326	464438	-	D38122|FASLG|356|Fas ligand (TNF superfamily, member 6)##AK314874|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_000639|FASLG|356|Fas ligand (TNF superfamily, member 6)##X89102|FASLG|356|Fas ligand (TNF superfamily, member 6)##BC017502|FASLG|356|Fas ligand (TNF superfamily, member 6)##U08137|FASLG|356|Fas ligand (TNF superfamily, member 6)##AF288573|FASLG|356|Fas ligand (TNF superfamily, member 6)##U11821|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ893466|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ896147|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY225406|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY858799|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_016227|C1orf9|51430|chromosome 1 open reading frame 9##AK302509|C1orf9|51430|chromosome 1 open reading frame 9##AL035291|C1orf9|51430|chromosome 1 open reading frame 9##BC137125|C1orf9|51430|chromosome 1 open reading frame 9##BC144487|C1orf9|51430|chromosome 1 open reading frame 9##AK302949|C1orf9|51430|chromosome 1 open reading frame 9##AJ250075|C1orf9|51430|chromosome 1 open reading frame 9##NM_014283|C1orf9|51430|chromosome 1 open reading frame 9##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4	0.0	0.864828	CTCF.p2:-19:0.865
chr11	64806401	64806544	reg1000290.p1	14.934	+	NM_013306 NM_147777 TSC_hg19_v1_chr11_+_64794948 BC012767 BC014520 AK315642 AK315034 AF001435 BC009897 AF175267 AB527759 CU679523 AF175268 BT006631 AB209439	-11527	+	NM_001199745 NM_001667 AK223502 TSC_hg19_v1_chr11_+_64781642 BC002530 AK096447 L13687 EU832671 EU832750 AB527923 AK294580 AF493888 BT006674	-24841	+	AB463431 AK096702 HM134154 NM_138456	-42020	-	NM_013299 TSC_hg19_v1_chr11_+_64808377	1909	+	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	1946	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	19530	-	NM_013306|SNX15|29907|sorting nexin 15##NM_147777|SNX15|29907|sorting nexin 15##BC012767|SNX15|29907|sorting nexin 15##BC014520|SNX15|29907|sorting nexin 15##AK315642|SNX15|29907|sorting nexin 15##AK315034|SNX15|29907|sorting nexin 15##AF001435|SNX15|29907|sorting nexin 15##BC009897|SNX15|29907|sorting nexin 15##AF175267|SNX15|29907|sorting nexin 15##AF175268|SNX15|29907|sorting nexin 15##BT006631|SNX15|29907|sorting nexin 15##AB209439|SNX15|29907|sorting nexin 15##NM_001199745|ARL2|402|ADP-ribosylation factor-like 2##NM_001667|ARL2|402|ADP-ribosylation factor-like 2##AK223502|ARL2|402|ADP-ribosylation factor-like 2##BC002530|ARL2|402|ADP-ribosylation factor-like 2##AK096447|ARL2-SNX15|100528018|ARL2-SNX15 readthrough##L13687|ARL2|402|ADP-ribosylation factor-like 2##EU832671|ARL2|402|ADP-ribosylation factor-like 2##EU832750|ARL2|402|ADP-ribosylation factor-like 2##AK294580|ARL2|402|ADP-ribosylation factor-like 2##AF493888|ARL2|402|ADP-ribosylation factor-like 2##BT006674|ARL2|402|ADP-ribosylation factor-like 2##AK096702|BATF2|116071|basic leucine zipper transcription factor, ATF-like 2##HM134154|BATF2|116071|basic leucine zipper transcription factor, ATF-like 2##NM_138456|BATF2|116071|basic leucine zipper transcription factor, ATF-like 2##NM_013299|SAC3D1|29901|SAC3 domain containing 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1	1.019782	0.013913	
chr11	14476683	14476817	reg1000453.p1	14.933	+	AK300103 NM_001177314	-90699	-	TSC_hg19_v1_chr11_-_14380730 BC013106 AK299606 AK313976 NM_012250	-96073	-	AK309550 AK309683 NM_001177315 NM_001102669	-96699	-	TSC_hg19_v1_chr11_-_14521358 AF084457 AF111807 BC012572 AL136593	44600	-	TSC_hg19_v1_chr11_-_14521392 BC037280 NM_016451 NM_001144062 NM_001144061	44663	-	TSC_hg19_v1_chr11_-_14541879 BC022372 D00759	65126	-	AK300103|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177314|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##BC013106|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK299606|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK313976|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_012250|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK309550|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK309683|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177315|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001102669|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AF084457|COPB1|1315|coatomer protein complex, subunit beta 1##AF111807|COPB1|1315|coatomer protein complex, subunit beta 1##BC012572|COPB1|1315|coatomer protein complex, subunit beta 1##AL136593|COPB1|1315|coatomer protein complex, subunit beta 1##BC037280|COPB1|1315|coatomer protein complex, subunit beta 1##NM_016451|COPB1|1315|coatomer protein complex, subunit beta 1##NM_001144062|COPB1|1315|coatomer protein complex, subunit beta 1##NM_001144061|COPB1|1315|coatomer protein complex, subunit beta 1##BC022372|PSMA1|5682|proteasome (prosome, macropain) subunit, alpha type, 1##D00759|PSMA1|5682|proteasome (prosome, macropain) subunit, alpha type, 1	1.396319	0.092414	denovo_WM_7:-20:0.235	denovo_WM_7:-21:0.220	denovo_WM_7:-36:0.318
chr2	135033058	135033224	reg1000404.p1	14.930	+	NM_002410 D17716 AF113921	-21256	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-707103	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-853787	-	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	443415	-	AK125008 NM_138326 BC016018 BC107420 AB071418	563077	+	TSC_hg19_v1_chr2_+_135676397 AK294889 NM_001241 NM_058241 AF048731 AK292913 BC114366	643256	+	NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AK294889|CCNT2|905|cyclin T2##NM_001241|CCNT2|905|cyclin T2##NM_058241|CCNT2|905|cyclin T2##AF048731|CCNT2|905|cyclin T2##AK292913|CCNT2|905|cyclin T2##BC114366|CCNT2|905|cyclin T2	1.40202	0.0	denovo_WM_7:11:0.396	denovo_WM_7:26:0.456
chr1	174713213	174713337	reg1000321.p2	14.929	+	BC095532 NM_005684 CU688296 CU688298 BC067456 BC067457 BC067458 BC067459 BC067460 BC069460 HQ995526	-296045	+	AK095838 TSC_hg19_v1_chr1_+_174128676 AL157958	-584583	+	BC041888 NM_014857 TSC_hg19_v1_chr1_+_174128608	-584675	+	AB007940 NM_001243765	55759	+	NM_001243763 AL049701	130284	+	NM_001035230 BC012094	131394	+	BC095532|GPR52|9293|G protein-coupled receptor 52##NM_005684|GPR52|9293|G protein-coupled receptor 52##BC067456|GPR52|9293|G protein-coupled receptor 52##BC067457|GPR52|9293|G protein-coupled receptor 52##BC067458|GPR52|9293|G protein-coupled receptor 52##BC067459|GPR52|9293|G protein-coupled receptor 52##BC067460|GPR52|9293|G protein-coupled receptor 52##BC069460|GPR52|9293|G protein-coupled receptor 52##HQ995526|GPR52|9293|G protein-coupled receptor 52##AK095838|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL157958|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC041888|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_014857|RABGAP1L|9910|RAB GTPase activating protein 1-like##AB007940|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243765|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like	1.358747	0.745895	CTCF.p2:14:0.746	denovo_WM_7:-24:0.235	denovo_WM_7:-39:0.247
chr2	136873762	136873881	reg1000360.p1	14.915	+	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-23	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-130605	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	-130692	-	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	1855	-	TSC_hg19_v1_chr2_+_137523114 AK299929	649295	+	NM_001080427	874640	+	NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B	0.486809	0.751577	denovo_WM_7:13:0.371	CTCF.p2:-23:0.752
chr8	37649737	37649849	reg1000343.p1	14.908	+	TSC_hg19_v1_chr8_+_37620162 AK291135 CR533532 EU831636 EU831720	-29617	+	TSC_hg19_v1_chr8_+_37620124 AL136616	-29671	+	NM_007198 TSC_hg19_v1_chr8_+_37620111 BC012334 AK021923	-29684	+	TSC_hg19_v1_chr8_+_37654400 AK027296 NM_032777	4606	+	TSC_hg19_v1_chr8_+_37654406 AB040964 BC146774 AY090637	4632	+	TSC_hg19_v1_chr8_+_37654778 AF378755 AB385479 AY181242	4989	+	AK291135|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##CR533532|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831636|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831720|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AL136616|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##NM_007198|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##BC012334|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK021923|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK027296|GPR124|25960|G protein-coupled receptor 124##NM_032777|GPR124|25960|G protein-coupled receptor 124##AB040964|GPR124|25960|G protein-coupled receptor 124##BC146774|GPR124|25960|G protein-coupled receptor 124##AY090637|GPR124|25960|G protein-coupled receptor 124##AF378755|GPR124|25960|G protein-coupled receptor 124##AY181242|GPR124|25960|G protein-coupled receptor 124	0.996246	0.0	
chr10	22242649	22242815	reg1000336.p1	14.902	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-419107	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-419338	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-419456	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	49717	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	49933	-	NM_001199938	256179	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	1.874442	0.888065	CTCF.p2:-8:0.888	denovo_WM_7:25:0.629	denovo_WM_7:40:0.625
chr8	17785369	17785549	reg1000328.p1	14.888	+	TSC_hg19_v1_chr8_+_17780529 BC065022 BC027477 BC140946	-4936	+	TSC_hg19_v1_chr8_+_17780501 BC000453	-4954	+	TSC_hg19_v1_chr8_+_17780498 AK307583 BC098391	-4964	+	TSC_hg19_v1_chr8_+_17822094 AF068293	36651	+	TSC_hg19_v1_chr8_+_17829865 AK091406 AX746961 AK302378	44510	+	AB528408 CU677637 DQ891071 DQ894254 U70063 TSC_hg19_v1_chr8_-_17941584 U47674	156117	-	BC065022|PCM1|5108|pericentriolar material 1##BC027477|PCM1|5108|pericentriolar material 1##BC140946|PCM1|5108|pericentriolar material 1##BC000453|PCM1|5108|pericentriolar material 1##AK307583|PCM1|5108|pericentriolar material 1##AF068293|PCM1|5108|pericentriolar material 1##AK091406|PCM1|5108|pericentriolar material 1##AK302378|PCM1|5108|pericentriolar material 1##DQ891071|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##DQ894254|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U70063|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U47674|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1	1.993891	0.0	denovo_WM_7:-2:0.459	denovo_WM_7:-3:0.459
chr6	141884078	141884231	reg1000458.p1	14.867	+	NM_006079 TSC_hg19_v1_chr6_-_139695784	-2188370	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	-2188393	-	NM_001168389 NM_001168388	-2188731	-	BC095542 GU727635 M73482 NM_002511	525710	-	TSC_hg19_v1_chr6_+_142468399 AF151062 AK301376 BC006989 BC022536	584236	+	TSC_hg19_v1_chr6_+_142468406 AL136684 AK130738 AF060225 AF271994 AK000051 NM_016485	584252	+	NM_006079|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC095542|NMBR|4829|neuromedin B receptor##GU727635|NMBR|4829|neuromedin B receptor##M73482|NMBR|4829|neuromedin B receptor##NM_002511|NMBR|4829|neuromedin B receptor##AF151062|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK301376|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC006989|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC022536|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AL136684|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK130738|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF060225|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF271994|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK000051|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##NM_016485|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)	0.999059	0.989197	CTCF.p2:-3:0.989	denovo_WM_7:42:0.239	denovo_WM_7:43:0.239	denovo_WM_7:44:0.239	denovo_WM_7:45:0.239
chr1	186692004	186692144	reg1000461.p1	14.866	+	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	-42584	-	M33478 NM_002597	-261847	-	AF076464 NM_022576	-274219	-	NM_024420 TSC_hg19_v1_chr1_+_186798126 AK290336 M68874 M72393 AK302938 BC114340	106014	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	3754661	-	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	5435529	+	AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M33478|PDC|5132|phosducin##NM_002597|PDC|5132|phosducin##AF076464|PDC|5132|phosducin##NM_022576|PDC|5132|phosducin##NM_024420|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK290336|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M68874|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M72393|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK302938|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##BC114340|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18	0.994068	0.386584	denovo_WM_7:13:0.409	denovo_WM_7:14:0.572	CTCF.p2:-34:0.387
chr11	64546669	64546815	reg1000319.p1	14.861	+	L49345 L49380 BC032676 BC020217 BC069273 TSC_hg19_v1_chr11_-_64546242 D26120 D26121 AK301803 BC034451 NM_004630 NM_201995 NM_201997 NM_201998	-484	-	Y08766 TSC_hg19_v1_chr11_-_64546170	-584	-	TSC_hg19_v1_chr11_-_64546015 BC008080 BC008724 AK296237 AK299705	-737	-	CU690514 BC039839 AK298383 AK304495 BC047865 NM_004579	23924	-	TSC_hg19_v1_chr11_-_64578027 BC002544 AJ297485 AJ297486 NM_130800 NM_130801	31315	-	TSC_hg19_v1_chr11_-_64578206 NM_000244 NM_130799 U93236 AJ297487 NM_130802	31452	-	L49345|SF1|7536|splicing factor 1##L49380|SF1|7536|splicing factor 1##BC032676|SF1|7536|splicing factor 1##BC020217|SF1|7536|splicing factor 1##BC069273|SF1|7536|splicing factor 1##D26120|SF1|7536|splicing factor 1##D26121|SF1|7536|splicing factor 1##AK301803|SF1|7536|splicing factor 1##BC034451|SF1|7536|splicing factor 1##NM_004630|SF1|7536|splicing factor 1##NM_201995|SF1|7536|splicing factor 1##NM_201997|SF1|7536|splicing factor 1##NM_201998|SF1|7536|splicing factor 1##Y08766|SF1|7536|splicing factor 1##BC008080|SF1|7536|splicing factor 1##BC008724|SF1|7536|splicing factor 1##AK296237|SF1|7536|splicing factor 1##AK299705|SF1|7536|splicing factor 1##BC039839|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##AK298383|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##AK304495|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##BC047865|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##NM_004579|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##BC002544|MEN1|4221|multiple endocrine neoplasia I##AJ297485|MEN1|4221|multiple endocrine neoplasia I##AJ297486|MEN1|4221|multiple endocrine neoplasia I##NM_130800|MEN1|4221|multiple endocrine neoplasia I##NM_130801|MEN1|4221|multiple endocrine neoplasia I##NM_000244|MEN1|4221|multiple endocrine neoplasia I##NM_130799|MEN1|4221|multiple endocrine neoplasia I##U93236|MEN1|4221|multiple endocrine neoplasia I##AJ297487|MEN1|4221|multiple endocrine neoplasia I##NM_130802|MEN1|4221|multiple endocrine neoplasia I	0.98975	0.0	
chr11	59436982	59437128	reg1000491.p1	14.859	+	TSC_hg19_v1_chr11_-_59436490 NM_152716	-548	-	AM392959 AB527197 TSC_hg19_v1_chr11_-_59436483 AL831992 AK127943	-630	-	AF185696 M86917 NM_002556	-53439	-	NM_001005324 AB529286	44262	-	AK125660 NM_001178040 NM_004177	85476	+	TSC_hg19_v1_chr11_+_59522849 AK293494 BC007405 BC007429	85792	+	NM_152716|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AM392959|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AL831992|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AK127943|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein##NM_001005324|OR10V1|390201|olfactory receptor, family 10, subfamily V, member 1##AK125660|STX3|6809|syntaxin 3##NM_001178040|STX3|6809|syntaxin 3##NM_004177|STX3|6809|syntaxin 3##AK293494|STX3|6809|syntaxin 3##BC007405|STX3|6809|syntaxin 3##BC007429|STX3|6809|syntaxin 3	0.997014	0.0	
chr2	128507259	128507422	reg1000250.p1	14.856	+	BC133675 TSC_hg19_v1_chr2_+_128459070 AK074549	-48315	+	NM_032740	-48744	+	NM_001161404	-67981	-	BC108671 TSC_hg19_v1_chr2_-_128568739 AB044749 AK002156 BC013990 BC068484 AK223319	61363	-	BC005401 TSC_hg19_v1_chr2_-_128568746 NM_001006622 NM_001006623 NM_018383	61416	-	AB464041 TSC_hg19_v1_chr2_-_128615689	108341	-	AK074549|SFT2D3|84826|SFT2 domain containing 3##NM_032740|SFT2D3|84826|SFT2 domain containing 3##NM_001161404|LIMS2|55679|LIM and senescent cell antigen-like domains 2##BC108671|WDR33|55339|WD repeat domain 33##AB044749|WDR33|55339|WD repeat domain 33##AK002156|WDR33|55339|WD repeat domain 33##BC013990|WDR33|55339|WD repeat domain 33##BC068484|WDR33|55339|WD repeat domain 33##AK223319|WDR33|55339|WD repeat domain 33##BC005401|WDR33|55339|WD repeat domain 33##NM_001006622|WDR33|55339|WD repeat domain 33##NM_001006623|WDR33|55339|WD repeat domain 33##NM_018383|WDR33|55339|WD repeat domain 33	1.993238	0.0	denovo_WM_7:80:0.983	denovo_WM_7:-94:0.310	denovo_WM_7:-95:0.310	denovo_WM_7:-96:0.310
chr4	164471571	164471703	reg1000294.p1	14.853	+	TSC_hg19_v1_chr4_+_164415868 BC011842	-55764	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-55795	+	TSC_hg19_v1_chr4_+_164415817 BC017418 AK298235	-55821	+	AB463878 AK000675 AK301408 NM_017923	63078	-	NM_012403	647225	-	AK289711 NM_001166373	832769	-	BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##BC017418|C4orf43|55319|chromosome 4 open reading frame 43##AK298235|C4orf43|55319|chromosome 4 open reading frame 43##AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1	0.997122	0.999281	CTCF.p2:-16:0.999	denovo_WM_7:30:0.313	denovo_WM_7:31:0.313	denovo_WM_7:32:0.313
chr11	62495417	62495563	reg1000283.p2	14.847	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-555	-	TSC_hg19_v1_chr11_-_62494900 DQ470474 AK122942 NM_001079559	-643	-	TSC_hg19_v1_chr11_-_62476984 BC009866 AK315423	-18497	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	537	+	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	26104	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	33538	+	BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##DQ470474|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##AK122942|HNRNPUL2-BSCL2|100534595|HNRNPUL2-BSCL2 readthrough##NM_001079559|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##BC009866|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##AK315423|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G	0.994239	0.0	denovo_WM_7:22:0.244	denovo_WM_7:23:0.244	denovo_WM_7:24:0.244	denovo_WM_7:25:0.244
chr20	47521626	47521765	reg1000276.p1	14.845	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-77256	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-77409	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1106377	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	16623	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	141131	+	TSC_hg19_v1_chr20_+_47662875 AF053640	141193	+	AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)	0.988878	0.916791	CTCF.p2:60:0.917
chrX	24072248	24072427	reg1000386.p1	14.830	+	AK057298 NM_030624	-27035	-	AK058173 NM_001169574 NM_152761 BC117344 BC117346 BC144007	-146171	+	TSC_hg19_v1_chrX_-_23926052 AY359114 AK311865 AF061264 BC016814 BC002333 BC010102 NM_024122	-146327	-	TSC_hg19_v1_chrX_+_24073062 BC019906 NM_001415	727	+	TSC_hg19_v1_chrX_+_24073072 AK222577 AK290397 AK312247 AB590041 CU676476 DQ891794 DQ894977 AB451230 AB451353 L19161	741	+	AB209892 NM_001178086 NM_001178095 X59738 TSC_hg19_v1_chrX_+_24167845 NM_001178084 NM_001178085 NM_003410	95455	+	AK057298|KLHL15|80311|kelch-like 15 (Drosophila)##NM_030624|KLHL15|80311|kelch-like 15 (Drosophila)##AK058173|CXorf58|254158|chromosome X open reading frame 58##NM_001169574|CXorf58|254158|chromosome X open reading frame 58##NM_152761|CXorf58|254158|chromosome X open reading frame 58##BC117344|CXorf58|254158|chromosome X open reading frame 58##BC117346|CXorf58|254158|chromosome X open reading frame 58##BC144007|CXorf58|254158|chromosome X open reading frame 58##AY359114|APOO|79135|apolipoprotein O##AK311865|APOO|79135|apolipoprotein O##AF061264|APOO|79135|apolipoprotein O##BC016814|APOO|79135|apolipoprotein O##BC002333|APOO|79135|apolipoprotein O##BC010102|APOO|79135|apolipoprotein O##NM_024122|APOO|79135|apolipoprotein O##BC019906|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##NM_001415|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK222577|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK290397|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK312247|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ891794|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ894977|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451230|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451353|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##L19161|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB209892|ZFX|7543|zinc finger protein, X-linked##NM_001178086|ZFX|7543|zinc finger protein, X-linked##NM_001178095|ZFX|7543|zinc finger protein, X-linked##X59738|ZFX|7543|zinc finger protein, X-linked##NM_001178084|ZFX|7543|zinc finger protein, X-linked##NM_001178085|ZFX|7543|zinc finger protein, X-linked##NM_003410|ZFX|7543|zinc finger protein, X-linked	0.992852	0.0	denovo_WM_7:-3:0.283	denovo_WM_7:-4:0.272	denovo_WM_7:-5:0.217
chr1	107993647	107993827	reg1000373.p1	14.821	+	AB023193 TSC_hg19_v1_chr1_+_107683657	-310133	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-310995	+	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	-394372	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	237387	-	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	513863	-	AJ619961 NM_213651 AK292567	741659	-	AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	1.490281	0.0	denovo_WM_7:1:0.416	denovo_WM_7:2:0.416	denovo_WM_7:-15:0.266
chr11	47475894	47476026	reg1000447.p1	14.814	+	AK310002 BC004196 Z33905 AF449218 NM_005055 NM_032645	-5252	-	BC106920 TSC_hg19_v1_chr11_-_47447991 BC073165 BC107804 BC008713 AK313518 NM_002804	-27979	-	M34079 TSC_hg19_v1_chr11_-_47447799 AK222485 AK291896 DQ892981 DQ896229	-28155	-	AK304430 AJ007988 DQ893717 AF248648 NM_001025596 NM_001172640 AF267533 AF267534	34587	-	BC031079 NM_198700	40112	-	AB210019 NM_001172639	69579	-	AK310002|RAPSN|5913|receptor-associated protein of the synapse##BC004196|RAPSN|5913|receptor-associated protein of the synapse##Z33905|RAPSN|5913|receptor-associated protein of the synapse##AF449218|RAPSN|5913|receptor-associated protein of the synapse##NM_005055|RAPSN|5913|receptor-associated protein of the synapse##NM_032645|RAPSN|5913|receptor-associated protein of the synapse##BC106920|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC073165|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC107804|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC008713|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##AK313518|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##NM_002804|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##M34079|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##AK222485|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##AK291896|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##DQ892981|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##DQ896229|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##AK304430|CELF1|10658|CUGBP, Elav-like family member 1##AJ007988|CELF1|10658|CUGBP, Elav-like family member 1##DQ893717|CELF1|10658|CUGBP, Elav-like family member 1##AF248648|CELF1|10658|CUGBP, Elav-like family member 1##NM_001025596|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172640|CELF1|10658|CUGBP, Elav-like family member 1##AF267533|CELF1|10658|CUGBP, Elav-like family member 1##AF267534|CELF1|10658|CUGBP, Elav-like family member 1##BC031079|CELF1|10658|CUGBP, Elav-like family member 1##NM_198700|CELF1|10658|CUGBP, Elav-like family member 1##AB210019|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172639|CELF1|10658|CUGBP, Elav-like family member 1	0.998417	0.994982	CTCF.p2:-14:0.995	denovo_WM_7:45:0.310	denovo_WM_7:46:0.310	denovo_WM_7:47:0.310
chr5	38994503	38994645	reg1000311.p1	14.802	+	TSC_hg19_v1_chr5_+_38846260 BC125209 BC125210	-148279	+	TSC_hg19_v1_chr5_+_38846113 NM_003999 BC010943 U60805 AK304016 BC063468	-148500	+	NM_001168355 TSC_hg19_v1_chr5_+_38845959	-148615	+	CU688716 DQ891672 DQ894858 TSC_hg19_v1_chr5_-_39074493 AK128358 CR749280	79911	-	TSC_hg19_v1_chr5_-_39074499 AY515854 BC029608 BC137163 BC137164 BC144509 NM_152756	79923	-	AF198052 U93049 AF001862 TSC_hg19_v1_chr5_-_39203164	208543	-	BC125209|OSMR|9180|oncostatin M receptor##BC125210|OSMR|9180|oncostatin M receptor##NM_003999|OSMR|9180|oncostatin M receptor##BC010943|OSMR|9180|oncostatin M receptor##U60805|OSMR|9180|oncostatin M receptor##AK304016|OSMR|9180|oncostatin M receptor##BC063468|OSMR|9180|oncostatin M receptor##NM_001168355|OSMR|9180|oncostatin M receptor##DQ891672|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##DQ894858|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##AK128358|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##CR749280|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##AY515854|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC029608|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137163|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137164|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC144509|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##NM_152756|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##AF198052|FYB|2533|FYN binding protein##U93049|FYB|2533|FYN binding protein##AF001862|FYB|2533|FYN binding protein	1.999475	0.0	denovo_WM_7:-26:0.353	denovo_WM_7:-27:0.268	denovo_WM_7:-43:0.270	denovo_WM_7:-44:0.355
chr10	35421100	35421241	reg1000428.p1	14.760	+	NM_181571 NM_183060 BC041810	-4785	+	D14825 TSC_hg19_v1_chr10_+_35416154	-5035	+	NM_001881 NM_182850 NM_182853 NM_183013 BC066342 TSC_hg19_v1_chr10_+_35415928 BC017117	-5308	+	NM_183011 NM_183012 AB590551	5566	+	AF417234 NM_182771 NM_182772	35284	+	NM_182769 NM_182770 AF417233 AY292864 BC090051 AK301906	43361	+	NM_181571|CREM|1390|cAMP responsive element modulator##NM_183060|CREM|1390|cAMP responsive element modulator##BC041810|CREM|1390|cAMP responsive element modulator##D14825|CREM|1390|cAMP responsive element modulator##NM_001881|CREM|1390|cAMP responsive element modulator##NM_182850|CREM|1390|cAMP responsive element modulator##NM_182853|CREM|1390|cAMP responsive element modulator##NM_183013|CREM|1390|cAMP responsive element modulator##BC066342|CREM|1390|cAMP responsive element modulator##BC017117|CREM|1390|cAMP responsive element modulator##NM_183011|CREM|1390|cAMP responsive element modulator##NM_183012|CREM|1390|cAMP responsive element modulator##AF417234|CREM|1390|cAMP responsive element modulator##NM_182771|CREM|1390|cAMP responsive element modulator##NM_182772|CREM|1390|cAMP responsive element modulator##NM_182769|CREM|1390|cAMP responsive element modulator##NM_182770|CREM|1390|cAMP responsive element modulator##AF417233|CREM|1390|cAMP responsive element modulator##AY292864|CREM|1390|cAMP responsive element modulator##BC090051|CREM|1390|cAMP responsive element modulator##AK301906|CREM|1390|cAMP responsive element modulator	0.990473	0.0	denovo_WM_7:-32:0.435	denovo_WM_7:-33:0.435
chr5	114961894	114962071	reg1000359.p1	14.755	+	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	-188	-	TSC_hg19_v1_chr5_-_114961697 AK074962	-290	-	BC109265 BC109266 NM_021649	-23865	-	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	190381	-	BC011033 TSC_hg19_v1_chr5_-_115177263 AB017507 AB590693 EU554057 BC012266 AK313320 NM_004707	215422	-	TSC_hg19_v1_chr5_+_115177642 NM_001284 BX647735 U91932 BC000804 D63643 BC012614 X99458 DQ891198 DQ894381 AK311843 BT009833 CR450341	215693	+	AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I##BC011033|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AB017507|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##EU554057|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##BC012266|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AK313320|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_004707|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_001284|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BX647735|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##U91932|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC000804|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##D63643|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC012614|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##X99458|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ891198|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ894381|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK311843|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BT009833|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##CR450341|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit	1.097786	0.0	denovo_WM_7:23:0.205	denovo_WM_7:24:0.256
chr7	15344793	15344910	reg1000380.p1	14.754	+	BC105005 BC143632 BC143633 NM_004080 NM_145695	-463837	-	NM_001163148	-1313802	-	NM_001163149 X87175	-1313983	-	BC108676 AK131284 NM_001004320	256755	-	AB463880 CR536553 CU677801 L36328 TSC_hg19_v1_chr7_-_15726203 BC017021 AK313386	381278	-	TSC_hg19_v1_chr7_-_15726309 AK309472 X82629 NM_005924	381440	-	BC105005|DGKB|1607|diacylglycerol kinase, beta 90kDa##BC143632|DGKB|1607|diacylglycerol kinase, beta 90kDa##BC143633|DGKB|1607|diacylglycerol kinase, beta 90kDa##NM_004080|DGKB|1607|diacylglycerol kinase, beta 90kDa##NM_145695|DGKB|1607|diacylglycerol kinase, beta 90kDa##NM_001163148|ETV1|2115|ets variant 1##NM_001163149|ETV1|2115|ets variant 1##X87175|ETV1|2115|ets variant 1##BC108676|AGMO|392636|alkylglycerol monooxygenase##AK131284|AGMO|392636|alkylglycerol monooxygenase##NM_001004320|AGMO|392636|alkylglycerol monooxygenase##CR536553|MEOX2|4223|mesenchyme homeobox 2##L36328|MEOX2|4223|mesenchyme homeobox 2##BC017021|MEOX2|4223|mesenchyme homeobox 2##AK313386|MEOX2|4223|mesenchyme homeobox 2##AK309472|MEOX2|4223|mesenchyme homeobox 2##X82629|MEOX2|4223|mesenchyme homeobox 2##NM_005924|MEOX2|4223|mesenchyme homeobox 2	0.999734	0.984418	denovo_WM_7:22:0.230	denovo_WM_7:23:0.230	denovo_WM_7:24:0.230	denovo_WM_7:25:0.230	CTCF.p2:-34:0.984
chr19	7633451	7633600	reg1000381.p1	14.740	+	TSC_hg19_v1_chr19_+_7600632 BC038229	-32757	+	TSC_hg19_v1_chr19_+_7600590 NM_001166114	-32931	+	TSC_hg19_v1_chr19_-_7600463 AK056629	-33064	-	TSC_hg19_v1_chr19_+_7660748 BC035808 NM_001080429 NM_020902 BC020431	27296	+	CR749864 TSC_hg19_v1_chr19_-_7692280	58717	-	TSC_hg19_v1_chr19_-_7694428 CU675557 DQ893187 DQ896508 BC007208 AB026111 AF258567 AF226051 NM_020196	60878	-	BC038229|PNPLA6|10908|patatin-like phospholipase domain containing 6##NM_001166114|PNPLA6|10908|patatin-like phospholipase domain containing 6##AK056629|LOC147791|147791|uncharacterized LOC147791##BC035808|CAMSAP3|57662|calmodulin regulated spectrin-associated protein family, member 3##NM_001080429|CAMSAP3|57662|calmodulin regulated spectrin-associated protein family, member 3##NM_020902|CAMSAP3|57662|calmodulin regulated spectrin-associated protein family, member 3##BC020431|CAMSAP3|57662|calmodulin regulated spectrin-associated protein family, member 3##CR749864|XAB2|56949|XPA binding protein 2##DQ893187|XAB2|56949|XPA binding protein 2##DQ896508|XAB2|56949|XPA binding protein 2##BC007208|XAB2|56949|XPA binding protein 2##AB026111|XAB2|56949|XPA binding protein 2##AF258567|XAB2|56949|XPA binding protein 2##AF226051|XAB2|56949|XPA binding protein 2##NM_020196|XAB2|56949|XPA binding protein 2	0.998997	0.998898	CTCF.p2:-83:0.999
chr8	21341376	21341556	reg1000364.p1	14.731	+	AF123652 AF123654 AF123655 AF123656 AF123657 AF123658 EU446940 BC075006 BC075007 AF123659 NM_021020	-1228720	-	TSC_hg19_v1_chr8_+_20054905 X62949 BC003100 AK298819 AB208806 L35249 CU688958 DQ891837 DQ895023 BC007309	-1286544	+	TSC_hg19_v1_chr8_+_20054891 AK294163 BC030640 AK312372	-1286573	+	AY326396 AY941828 U93703 AB529071 CU692022 AF002700 BC033096 TSC_hg19_v1_chr8_-_21645836 AK299623 U97145	304326	-	TSC_hg19_v1_chr8_-_21646372 BC041688 NM_001165038 NM_001165039 NM_001495	304900	-	AB528923 AF034970 CU689448 DQ890550 DQ896808 AK292126 BC032623 AK226110 AK296671 TSC_hg19_v1_chr8_-_21771202 NM_003974	429699	-	AF123652|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123654|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123655|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123656|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123657|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123658|LZTS1|11178|leucine zipper, putative tumor suppressor 1##EU446940|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075006|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075007|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123659|LZTS1|11178|leucine zipper, putative tumor suppressor 1##NM_021020|LZTS1|11178|leucine zipper, putative tumor suppressor 1##X62949|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC003100|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK298819|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AB208806|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##L35249|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ891837|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ895023|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC007309|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK294163|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC030640|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK312372|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AY326396|GFRA2|2675|GDNF family receptor alpha 2##AY941828|GFRA2|2675|GDNF family receptor alpha 2##U93703|GFRA2|2675|GDNF family receptor alpha 2##AF002700|GFRA2|2675|GDNF family receptor alpha 2##AK299623|GFRA2|2675|GDNF family receptor alpha 2##U97145|GFRA2|2675|GDNF family receptor alpha 2##BC041688|GFRA2|2675|GDNF family receptor alpha 2##NM_001165038|GFRA2|2675|GDNF family receptor alpha 2##NM_001165039|GFRA2|2675|GDNF family receptor alpha 2##NM_001495|GFRA2|2675|GDNF family receptor alpha 2##AF034970|DOK2|9046|docking protein 2, 56kDa##DQ890550|DOK2|9046|docking protein 2, 56kDa##DQ896808|DOK2|9046|docking protein 2, 56kDa##AK292126|DOK2|9046|docking protein 2, 56kDa##BC032623|DOK2|9046|docking protein 2, 56kDa##AK226110|DOK2|9046|docking protein 2, 56kDa##AK296671|DOK2|9046|docking protein 2, 56kDa##NM_003974|DOK2|9046|docking protein 2, 56kDa	2.981231	0.083262	denovo_WM_7:20:0.453	denovo_WM_7:21:0.459	denovo_WM_7:-37:0.495	denovo_WM_7:-38:0.330	denovo_WM_7:-53:0.331	denovo_WM_7:-54:0.496
chr4	86581927	86582107	reg1000368.p2	14.729	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-185674	+	NM_014991	-694474	-	NM_001263 U65887	-1077924	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	117831	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	117881	+	AK307423 TSC_hg19_v1_chr4_+_86749064	167037	+	NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24	0.997236	0.0	
chrX	69658904	69659050	reg1000382.p1	14.718	+	NM_001171191 NM_001171192 NM_001171193 NM_017711 AB048363 AK299255 AK310090 AK301025 AK316035 AK000214 AK307778 BC032009 AY358986	-15945	+	NM_012310 AK313133 BC003664 BC038459 AF071592 BC049218 AB208797 BC050548 BC011801	-149046	+	TSC_hg19_v1_chrX_-_69509768 BC012996 AY358829 AK024746 AK311539 AF151061 NM_016484 BX537725	-149185	-	AB209328 NM_021120 AK315041 U49089	5784	+	TSC_hg19_v1_chrX_+_69672143 AB033058 NM_020730	13198	+	TSC_hg19_v1_chrX_+_69672415 AK304020 AK316518	13429	+	NM_001171191|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_001171192|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_001171193|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_017711|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AB048363|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK299255|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK310090|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK301025|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK316035|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK000214|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK307778|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##BC032009|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AY358986|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_012310|KIF4A|24137|kinesin family member 4A##AK313133|KIF4A|24137|kinesin family member 4A##BC003664|KIF4A|24137|kinesin family member 4A##BC038459|KIF4A|24137|kinesin family member 4A##AF071592|KIF4A|24137|kinesin family member 4A##BC049218|KIF4A|24137|kinesin family member 4A##AB208797|KIF4A|24137|kinesin family member 4A##BC050548|KIF4A|24137|kinesin family member 4A##BC011801|KIF4A|24137|kinesin family member 4A##BC012996|PDZD11|51248|PDZ domain containing 11##AY358829|PDZD11|51248|PDZ domain containing 11##AK024746|PDZD11|51248|PDZ domain containing 11##AK311539|PDZD11|51248|PDZ domain containing 11##AF151061|PDZD11|51248|PDZ domain containing 11##NM_016484|PDZD11|51248|PDZ domain containing 11##BX537725|PDZD11|51248|PDZ domain containing 11##AB209328|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_021120|DLG3|1741|discs, large homolog 3 (Drosophila)##AK315041|DLG3|1741|discs, large homolog 3 (Drosophila)##U49089|DLG3|1741|discs, large homolog 3 (Drosophila)##AB033058|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_020730|DLG3|1741|discs, large homolog 3 (Drosophila)##AK304020|DLG3|1741|discs, large homolog 3 (Drosophila)##AK316518|DLG3|1741|discs, large homolog 3 (Drosophila)	0.987224	0.0	
chr19	2260428	2260582	reg1000325.p1	14.704	+	AK056978 NM_144616	-4087	-	NM_000479	-11393	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-23667	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	9015	+	TSC_hg19_v1_chr19_+_2269526 BC042364	9021	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	9037	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.999506	0.0	denovo_WM_7:35:0.975
chr6	53516151	53516318	reg1000299.p1	14.693	+	TSC_hg19_v1_chr6_-_53409900 AK304288 NM_001197115 NM_001498	-106323	-	TSC_hg19_v1_chr6_-_53409836 AK313480	-106399	-	TSC_hg19_v1_chr6_-_53409821 AB262176 BC022487	-106421	-	EF633513 NM_001003760	14271	-	TSC_hg19_v1_chr6_+_53659294 AK021896	143066	+	TSC_hg19_v1_chr6_+_53659776 BC003193 NM_018214	143525	+	AK304288|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##NM_001197115|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##NM_001498|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AK313480|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AB262176|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC022487|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EF633513|KLHL31|401265|kelch-like 31 (Drosophila)##NM_001003760|KLHL31|401265|kelch-like 31 (Drosophila)##AK021896|LRRC1|55227|leucine rich repeat containing 1##BC003193|LRRC1|55227|leucine rich repeat containing 1##NM_018214|LRRC1|55227|leucine rich repeat containing 1	0.994312	0.768512	CTCF.p2:-91:0.769
chr8	71286972	71287128	reg1000477.p1	14.683	+	TSC_hg19_v1_chr8_-_70983549 AF319458 AK022595 NM_024504	-303495	-	TSC_hg19_v1_chr8_-_70983468 BC052311	-303579	-	AK308488 AF205075 AK096879 NM_030958	-539801	-	BC092442 TSC_hg19_v1_chr8_-_71315599	28497	-	TSC_hg19_v1_chr8_-_71316041 NM_006540 X97674 AK308426	28976	-	BT007359 CR541654 CR541739 DQ892688 DQ895932 TSC_hg19_v1_chr8_-_71520586 AK292777 BC020283 BC000687 AK289397 X63679 BC037738	233472	-	AF319458|PRDM14|63978|PR domain containing 14##AK022595|PRDM14|63978|PR domain containing 14##NM_024504|PRDM14|63978|PR domain containing 14##BC052311|PRDM14|63978|PR domain containing 14##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC092442|NCOA2|10499|nuclear receptor coactivator 2##NM_006540|NCOA2|10499|nuclear receptor coactivator 2##X97674|NCOA2|10499|nuclear receptor coactivator 2##AK308426|NCOA2|10499|nuclear receptor coactivator 2##BT007359|TRAM1|23471|translocation associated membrane protein 1##CR541654|TRAM1|23471|translocation associated membrane protein 1##CR541739|TRAM1|23471|translocation associated membrane protein 1##DQ892688|TRAM1|23471|translocation associated membrane protein 1##DQ895932|TRAM1|23471|translocation associated membrane protein 1##AK292777|TRAM1|23471|translocation associated membrane protein 1##BC020283|TRAM1|23471|translocation associated membrane protein 1##BC000687|TRAM1|23471|translocation associated membrane protein 1##AK289397|TRAM1|23471|translocation associated membrane protein 1##X63679|TRAM1|23471|translocation associated membrane protein 1##BC037738|TRAM1|23471|translocation associated membrane protein 1	0.989492	0.0	denovo_WM_7:-10:0.713
chr13	25302255	25302367	reg1000354.p2	14.682	+	AK292968 NM_001185085 NM_001676	-47763	+	TSC_hg19_v1_chr13_-_25086917 BC017815 AF057160 AK304399 AF158255 NM_006437	-215400	-	BC040438 NM_178540 AY358145	-418594	+	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	36008	+	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	194658	-	TSC_hg19_v1_chr13_-_25497054 NM_018451	194758	-	AK292968|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001185085|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001676|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##BC017815|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF057160|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AK304399|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF158255|PARP4|143|poly (ADP-ribose) polymerase family, member 4##NM_006437|PARP4|143|poly (ADP-ribose) polymerase family, member 4##BC040438|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##NM_178540|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##AY358145|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J##NM_018451|CENPJ|55835|centromere protein J	0.99684	0.707524	CTCF.p2:-4:0.708
chr6	150489182	150489248	reg1000944.p2	14.679	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-24974	+	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	-99002	-	BC131600 AB528849 AY039682 NM_130900	-142582	-	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	200943	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	431805	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	697617	+	NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.0	0.0	
chrX	52950623	52950794	reg1000001.p4	14.672	+	AL834135 NM_001099684	-22300	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	-24317	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	-24364	+	AL834135 NM_001099684	34920	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	36954	-	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	73938	-	AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A	0.748998	0.0	denovo_WM_7:62:0.749
chr16	81774305	81774485	reg1000334.p3	14.671	+	AY172689 NM_030629	-245442	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	-295562	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-425745	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	38502	+	TSC_hg19_v1_chr16_+_81812901 AB208914	38507	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	38535	+	AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	1.995039	0.0	denovo_WM_7:-36:0.249	denovo_WM_7:-37:0.213	denovo_WM_7:-56:0.214	denovo_WM_7:-57:0.249
chr7	74988366	74988527	reg1000363.p1	14.666	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-120926	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-480072	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-498754	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	124	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	36519	+	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	51208	+	NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1	0.0	0.0	
chr6	2892264	2892440	reg1000362.p2	14.650	+	TSC_hg19_v1_chr6_-_2842202 AK304641 AK309765	-50155	-	TSC_hg19_v1_chr6_-_2842095 BC009015 NM_030666 M93056 AK298044 AK312973 AK223370 AK291327	-50270	-	TSC_hg19_v1_chr6_-_2840686 BT006928 AB590702	-51600	-	TSC_hg19_v1_chr6_-_2903544 BC002538 AB060690 L40378 AK314842 NM_004155	11156	-	AK098566 TSC_hg19_v1_chr6_-_2971511	79062	-	Z22658 TSC_hg19_v1_chr6_-_2971802 BC098564	79459	-	AK304641|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK309765|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC009015|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##NM_030666|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##M93056|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK298044|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK312973|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK223370|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK291327|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BT006928|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC002538|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AB060690|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##L40378|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK314842|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##NM_004155|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK098566|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##Z22658|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##BC098564|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6	1.998847	0.0	denovo_WM_7:-3:0.290	denovo_WM_7:-4:0.535	denovo_WM_7:10:0.285	denovo_WM_7:11:0.530
chr14	73975454	73975576	reg1000370.p1	14.644	+	TSC_hg19_v1_chr14_+_73957687 BC071954	-17823	+	TSC_hg19_v1_chr14_+_73957674 AY390535	-17842	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	-17852	+	BX161396 AK300886 DQ082754 NM_001037161 BC127747 BC127748 BC143042 BC132889 BC132891 BC144425 GU727640	28456	+	AK093515 AX748177 BC047590 NM_001220484 NM_203309	50131	-	AK001939 DQ082755 AK223635 NM_006821 BC006335 TSC_hg19_v1_chr14_+_74035788	60260	+	BC071954|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##BX161396|ACOT1|641371|acyl-CoA thioesterase 1##AK300886|ACOT1|641371|acyl-CoA thioesterase 1##DQ082754|ACOT1|641371|acyl-CoA thioesterase 1##NM_001037161|ACOT1|641371|acyl-CoA thioesterase 1##BC127747|ACOT1|641371|acyl-CoA thioesterase 1##BC127748|ACOT1|641371|acyl-CoA thioesterase 1##BC143042|ACOT1|641371|acyl-CoA thioesterase 1##BC132889|ACOT1|641371|acyl-CoA thioesterase 1##BC132891|ACOT1|641371|acyl-CoA thioesterase 1##GU727640|ACOT1|641371|acyl-CoA thioesterase 1##AK093515|HEATR4|399671|HEAT repeat containing 4##BC047590|HEATR4|399671|HEAT repeat containing 4##NM_001220484|HEATR4|399671|HEAT repeat containing 4##NM_203309|HEATR4|399671|HEAT repeat containing 4##AK001939|ACOT2|10965|acyl-CoA thioesterase 2##DQ082755|ACOT2|10965|acyl-CoA thioesterase 2##AK223635|ACOT2|10965|acyl-CoA thioesterase 2##NM_006821|ACOT2|10965|acyl-CoA thioesterase 2##BC006335|ACOT2|10965|acyl-CoA thioesterase 2	1.881771	0.819691	CTCF.p2:-13:0.820	denovo_WM_7:37:0.524
chr16	23304392	23304555	reg1000374.p1	14.643	+	U48936 BC059391 NM_001039 TSC_hg19_v1_chr16_+_23194066	-110421	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	-143924	-	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	-478622	+	NM_000336 BC036352 X87159 AK313192	9154	+	TSC_hg19_v1_chr16_-_23464487 BC000549 BC037563 NM_153603	160022	-	TSC_hg19_v1_chr16_-_23521748 AB384559 CU674130 DQ892534 DQ895745 BC050620 AF165531	217262	-	U48936|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##BC059391|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##NM_001039|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_000336|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC036352|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##X87159|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##AK313192|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC000549|COG7|91949|component of oligomeric golgi complex 7##BC037563|COG7|91949|component of oligomeric golgi complex 7##NM_153603|COG7|91949|component of oligomeric golgi complex 7##DQ892534|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##DQ895745|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##BC050620|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF165531|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2	1.791104	0.0	denovo_WM_7:-15:0.423	denovo_WM_7:-16:0.281	denovo_WM_7:-30:0.430	denovo_WM_7:-31:0.247	denovo_WM_7:-32:0.218
chr1	20539453	20539577	reg1000349.p2	14.636	+	BC047428 NM_152376 BX648631 AK058158 TSC_hg19_v1_chr1_+_20512591	-26931	+	NM_001105572	-37829	-	TSC_hg19_v1_chr1_+_20480706 BC041651	-58752	+	NM_001039500 AK125833	77905	+	AY204901 TSC_hg19_v1_chr1_-_20812323	272783	-	NM_018584 TSC_hg19_v1_chr1_-_20812743	273266	-	BC047428|UBXN10|127733|UBX domain protein 10##NM_152376|UBXN10|127733|UBX domain protein 10##BX648631|UBXN10|127733|UBX domain protein 10##AK058158|UBXN10|127733|UBX domain protein 10##NM_001105572|PLA2G2C|391013|phospholipase A2, group IIC##NM_001039500|VWA5B1|127731|von Willebrand factor A domain containing 5B1##AK125833|VWA5B1|127731|von Willebrand factor A domain containing 5B1##AY204901|CAMK2N1|55450|calcium/calmodulin-dependent protein kinase II inhibitor 1##NM_018584|CAMK2N1|55450|calcium/calmodulin-dependent protein kinase II inhibitor 1	0.999892	0.9917	CTCF.p2:0:0.992
chr4	39765920	39766100	reg1000413.p2	14.630	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-66206	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-125454	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-236384	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	213328	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	213583	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	292522	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	1.519689	0.0	denovo_WM_7:40:0.532	denovo_WM_7:55:0.206	denovo_WM_7:57:0.277
chr11	35843459	35843572	reg1000434.p1	14.629	+	AB529107 CU680538 DQ891061 DQ894241 TSC_hg19_v1_chr11_+_35684686	-158842	+	TSC_hg19_v1_chr11_+_35684427 BC024031 AK074242 AJ249128	-159065	+	TSC_hg19_v1_chr11_+_35684404 BC013166 NM_017583	-159142	+	BC136286 BC143823 BC143824 TSC_hg19_v1_chr11_+_35965585 AK293930 AK075546 AK299186 NM_174902 BC042754	122096	+	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	467438	-	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	467471	-	DQ891061|TRIM44|54765|tripartite motif containing 44##DQ894241|TRIM44|54765|tripartite motif containing 44##BC024031|TRIM44|54765|tripartite motif containing 44##AK074242|TRIM44|54765|tripartite motif containing 44##AJ249128|TRIM44|54765|tripartite motif containing 44##BC013166|TRIM44|54765|tripartite motif containing 44##NM_017583|TRIM44|54765|tripartite motif containing 44##BC136286|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143823|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143824|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK293930|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK075546|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK299186|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##NM_174902|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC042754|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9	0.999365	0.75268	CTCF.p2:0:0.753
chr1	25059890	25060022	reg1000429.p1	14.628	+	TSC_hg19_v1_chr1_+_24969795 AF048977 BC017315	-90152	+	TSC_hg19_v1_chr1_+_24969792 AK302498	-90177	+	TSC_hg19_v1_chr1_+_24969763 BC011019 BC036187	-90218	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	11875	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	11977	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	12049	+	AF048977|SRRM1|10250|serine/arginine repetitive matrix 1##BC017315|SRRM1|10250|serine/arginine repetitive matrix 1##AK302498|SRRM1|10250|serine/arginine repetitive matrix 1##BC011019|SRRM1|10250|serine/arginine repetitive matrix 1##BC036187|SRRM1|10250|serine/arginine repetitive matrix 1##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4	1.930282	0.0	denovo_WM_7:32:0.862	denovo_WM_7:-91:0.645
chr15	75626149	75626329	reg1000376.p2	14.625	+	AF263742 NM_001145224	-51061	+	AF263742 NM_001164404	-75341	+	TSC_hg19_v1_chr15_+_75494242 AF495726 BC011379 AK125604	-131996	+	NM_017828 AK225716 BC033744 AK000459 AK293708 AK057145 AK124968 AK314740 BC069195 BC068998 AL136872	2155	+	NM_024608 AK026055	13130	+	AB209141 TSC_hg19_v1_chr15_-_75660874	34622	-	AF263742|GOLGA6A|342096|golgin A6 family, member A##NM_001145224|GOLGA6D|653643|golgin A6 family, member D##AF263742|GOLGA6A|342096|golgin A6 family, member A##NM_001164404|GOLGA6C|653641|golgin A6 family, member C##AF495726|C15orf39|56905|chromosome 15 open reading frame 39##BC011379|C15orf39|56905|chromosome 15 open reading frame 39##AK125604|C15orf39|56905|chromosome 15 open reading frame 39##NM_017828|COMMD4|54939|COMM domain containing 4##AK225716|COMMD4|54939|COMM domain containing 4##BC033744|COMMD4|54939|COMM domain containing 4##AK000459|COMMD4|54939|COMM domain containing 4##AK293708|COMMD4|54939|COMM domain containing 4##AK057145|COMMD4|54939|COMM domain containing 4##AK314740|COMMD4|54939|COMM domain containing 4##BC069195|COMMD4|54939|COMM domain containing 4##BC068998|COMMD4|54939|COMM domain containing 4##AL136872|COMMD4|54939|COMM domain containing 4##NM_024608|NEIL1|79661|nei endonuclease VIII-like 1 (E. coli)##AK026055|NEIL1|79661|nei endonuclease VIII-like 1 (E. coli)##AB209141|MAN2C1|4123|mannosidase, alpha, class 2C, member 1	0.993766	0.0	
chr1	160681607	160681756	reg1000419.p1	14.619	+	BT019813 CR457012 AB590257 CU688852 DQ896316 EU176422 M59904 M37766 BC016182 NM_001778 X06341 BC030224 AK225636 AK310624 AK310744	-95	-	AK314244 NM_003037 BC012602	-64618	-	AK313496 TSC_hg19_v1_chr1_-_160549273 AF054815 AF054816 AF054817 AF054818 U96627 Y12632 NM_001184879 NM_001184881 NM_001184882 NM_003874	-132393	-	AK298548 AK298499 AY358512 AL834424 AK301438 TSC_hg19_v1_chr1_+_160709067 AK290706 AK292097 AK292148 AK301137 AK301432 AF390894 AB027233 NM_021181 AF291815 AJ271869 AJ276429 BC027867 AB590100 AM392941 AM393275 EU832487 EU832567	27383	+	NM_001033667 NM_002348 BC121049 AF244129 AK292048 AK303403 BC042905 BC064485 BC027920 L42621	84317	+	AB528046 AF145782 CU691064 BC053985 AJ245375 AJ245376 AJ245377 BC041607 AF105261 AF242540 AF107761 AK313201 AF117711 AK295950 BC028073 NM_001166663 NM_001166664 NM_016382	150897	-	BT019813|CD48|962|CD48 molecule##CR457012|CD48|962|CD48 molecule##DQ896316|CD48|962|CD48 molecule##EU176422|CD48|962|CD48 molecule##M59904|CD48|962|CD48 molecule##M37766|CD48|962|CD48 molecule##BC016182|CD48|962|CD48 molecule##NM_001778|CD48|962|CD48 molecule##X06341|CD48|962|CD48 molecule##BC030224|CD48|962|CD48 molecule##AK225636|CD48|962|CD48 molecule##AK310624|CD48|962|CD48 molecule##AK310744|CD48|962|CD48 molecule##AK314244|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_003037|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BC012602|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##AK313496|CD84|8832|CD84 molecule##AF054815|CD84|8832|CD84 molecule##AF054816|CD84|8832|CD84 molecule##AF054817|CD84|8832|CD84 molecule##AF054818|CD84|8832|CD84 molecule##U96627|CD84|8832|CD84 molecule##Y12632|CD84|8832|CD84 molecule##NM_001184879|CD84|8832|CD84 molecule##NM_001184881|CD84|8832|CD84 molecule##NM_001184882|CD84|8832|CD84 molecule##NM_003874|CD84|8832|CD84 molecule##AK298548|SLAMF7|57823|SLAM family member 7##AK298499|SLAMF7|57823|SLAM family member 7##AY358512|SLAMF7|57823|SLAM family member 7##AL834424|SLAMF7|57823|SLAM family member 7##AK301438|SLAMF7|57823|SLAM family member 7##AK290706|SLAMF7|57823|SLAM family member 7##AK292097|SLAMF7|57823|SLAM family member 7##AK292148|SLAMF7|57823|SLAM family member 7##AK301137|SLAMF7|57823|SLAM family member 7##AK301432|SLAMF7|57823|SLAM family member 7##AF390894|SLAMF7|57823|SLAM family member 7##AB027233|SLAMF7|57823|SLAM family member 7##NM_021181|SLAMF7|57823|SLAM family member 7##AF291815|SLAMF7|57823|SLAM family member 7##AJ271869|SLAMF7|57823|SLAM family member 7##AJ276429|SLAMF7|57823|SLAM family member 7##BC027867|SLAMF7|57823|SLAM family member 7##AM392941|SLAMF7|57823|SLAM family member 7##AM393275|SLAMF7|57823|SLAM family member 7##EU832487|SLAMF7|57823|SLAM family member 7##EU832567|SLAMF7|57823|SLAM family member 7##NM_001033667|LY9|4063|lymphocyte antigen 9##NM_002348|LY9|4063|lymphocyte antigen 9##BC121049|LY9|4063|lymphocyte antigen 9##AF244129|LY9|4063|lymphocyte antigen 9##AK292048|LY9|4063|lymphocyte antigen 9##AK303403|LY9|4063|lymphocyte antigen 9##BC042905|LY9|4063|lymphocyte antigen 9##BC064485|LY9|4063|lymphocyte antigen 9##BC027920|LY9|4063|lymphocyte antigen 9##L42621|LY9|4063|lymphocyte antigen 9##AF145782|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC053985|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245375|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245376|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245377|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC041607|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF105261|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF242540|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF107761|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK313201|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF117711|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK295950|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC028073|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166663|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166664|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_016382|CD244|51744|CD244 molecule, natural killer cell receptor 2B4	0.986111	0.0	denovo_WM_7:-22:0.735	denovo_WM_7:-23:0.203
chr12	122028026	122028152	reg1000043.p1	14.609	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-9175	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-9830	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-123015	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	36554	+	BC057760 NM_173855	79470	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	122655	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	1.967431	0.0	denovo_WM_7:63:0.534
chr22	25477500	25477631	reg1000479.p1	14.607	+	BC171801 NM_001145206	-53625	+	BC130647 BC130649 CR456388 NM_001001663	-142253	-	NM_001039948 NM_001098497 NM_001098498 NM_133454 AB275761 AK091494 BC036915	-275355	+	TSC_hg19_v1_chr22_+_25591072 AK025418	113564	+	NM_004076 U71216 BC069479 BC102021 BC102022 BC107482 CR456427	118279	+	NM_000496	138046	+	BC171801|KIAA1671|85379|KIAA1671##NM_001145206|KIAA1671|85379|KIAA1671##BC130647|TMEM211|255349|transmembrane protein 211##BC130649|TMEM211|255349|transmembrane protein 211##CR456388|TMEM211|255349|transmembrane protein 211##NM_001001663|TMEM211|255349|transmembrane protein 211##NM_001039948|SGSM1|129049|small G protein signaling modulator 1##NM_001098497|SGSM1|129049|small G protein signaling modulator 1##NM_001098498|SGSM1|129049|small G protein signaling modulator 1##NM_133454|SGSM1|129049|small G protein signaling modulator 1##AB275761|SGSM1|129049|small G protein signaling modulator 1##BC036915|SGSM1|129049|small G protein signaling modulator 1##AK025418|KIAA1671|85379|KIAA1671##NM_004076|CRYBB3|1417|crystallin, beta B3##U71216|CRYBB3|1417|crystallin, beta B3##BC069479|CRYBB3|1417|crystallin, beta B3##BC102021|CRYBB3|1417|crystallin, beta B3##BC102022|CRYBB3|1417|crystallin, beta B3##BC107482|CRYBB3|1417|crystallin, beta B3##CR456427|CRYBB3|1417|crystallin, beta B3##NM_000496|CRYBB2|1415|crystallin, beta B2	0.922343	0.311807	CTCF.p2:-22:0.312	denovo_WM_7:26:0.380	denovo_WM_7:27:0.335
chr12	122516448	122516574	reg1000369.p1	14.590	+	AK296159 TSC_hg19_v1_chr12_+_122459903 NM_001024808 NM_020993 AK316486 BC113627 BC094723 HQ258124 AB590498	-56618	+	TSC_hg19_v1_chr12_+_122356497 NM_001178003 NM_144668 BC028421 BC036233	-160030	+	TSC_hg19_v1_chr12_+_122326731 AB003177 NM_002813 AK315389 BC002383 BC004184 BC004213 DQ893594 EU831432 EU831524 AB528684	-189816	+	TSC_hg19_v1_chr12_+_122516655 BC151841 NM_014938	96	+	TSC_hg19_v1_chr12_+_122516682 AF312918	206	+	BC069272 TSC_hg19_v1_chr12_+_122614551	98009	+	AK296159|BCL7A|605|B-cell CLL/lymphoma 7A##NM_001024808|BCL7A|605|B-cell CLL/lymphoma 7A##NM_020993|BCL7A|605|B-cell CLL/lymphoma 7A##AK316486|BCL7A|605|B-cell CLL/lymphoma 7A##BC113627|BCL7A|605|B-cell CLL/lymphoma 7A##BC094723|BCL7A|605|B-cell CLL/lymphoma 7A##HQ258124|BCL7A|605|B-cell CLL/lymphoma 7A##NM_001178003|WDR66|144406|WD repeat domain 66##NM_144668|WDR66|144406|WD repeat domain 66##BC028421|WDR66|144406|WD repeat domain 66##BC036233|WDR66|144406|WD repeat domain 66##NM_002813|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##AK315389|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC002383|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004184|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004213|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##DQ893594|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831432|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831524|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC151841|MLXIP|22877|MLX interacting protein##NM_014938|MLXIP|22877|MLX interacting protein##AF312918|MLXIP|22877|MLX interacting protein##BC069272|MLXIP|22877|MLX interacting protein	0.992308	0.0	denovo_WM_7:8:0.837
chr7	6036968	6037101	reg1000388.p1	14.582	+	AK314983 BC034495 NM_001099697 NM_173565	-26721	-	BC067810 NM_015622 BC132749 BC132751 AK292326 BC010130 CU679629	-98654	+	BC147028 BC147029 BC113704 BC113706 NM_001097622 CU686830 BC069468 BC069512 BC069550 HQ258718	-116561	+	AB103082 AB103083 AB103085 AB103087 AB587472 U14658 BX537558 TSC_hg19_v1_chr7_-_6048681 BC093921 BC143397 AK312390 BC008400 BC031832 AK294661 NM_000535	11658	-	TSC_hg19_v1_chr7_+_6048883 AK313037 NM_006303 U24169	11838	+	TSC_hg19_v1_chr7_+_6048905 BC013630	11873	+	AK314983|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##BC034495|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##NM_001099697|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##NM_173565|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##BC067810|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##NM_015622|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##BC132749|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##BC132751|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##AK292326|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##BC010130|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##BC147028|OCM|654231|oncomodulin##BC147029|OCM|654231|oncomodulin##BC113704|OCM|654231|oncomodulin##BC113706|OCM|654231|oncomodulin##NM_001097622|OCM|654231|oncomodulin##BC069468|OCM|654231|oncomodulin##BC069512|OCM|654231|oncomodulin##BC069550|OCM|654231|oncomodulin##HQ258718|OCM|654231|oncomodulin##AB103082|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##AB103083|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##AB103085|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##U14658|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##BX537558|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##BC093921|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##BC143397|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##AK312390|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##BC008400|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##BC031832|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##AK294661|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##NM_000535|PMS2|5395|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)##AK313037|AIMP2|7965|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2##NM_006303|AIMP2|7965|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2##U24169|AIMP2|7965|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2##BC013630|AIMP2|7965|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	0.991845	0.284663	CTCF.p2:-14:0.285	denovo_WM_7:30:0.323	denovo_WM_7:31:0.323	denovo_WM_7:32:0.323
chr10	98047660	98047815	reg1000383.p1	14.580	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-16494	-	BC109045 BC109046 TSC_hg19_v1_chr10_+_97889812 AK095317 BC030967	-157995	+	TSC_hg19_v1_chr10_+_97889471 CR627437 NM_014803 BC011627	-158241	+	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	16431	+	AF367761 NM_001040102 NM_001040103 NM_033207	71337	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	225826	-	AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC109045|ZNF518A|9849|zinc finger protein 518A##BC109046|ZNF518A|9849|zinc finger protein 518A##BC030967|ZNF518A|9849|zinc finger protein 518A##CR627437|ZNF518A|9849|zinc finger protein 518A##NM_014803|ZNF518A|9849|zinc finger protein 518A##NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2	0.0	0.0	
chr4	164585050	164585198	reg1000396.p3	14.577	+	AB463878 AK000675 AK301408 NM_017923	-50409	-	TSC_hg19_v1_chr4_+_164415868 BC011842	-169251	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-169282	+	NM_012403	533738	-	AK289711 NM_001166373	719282	-	TSC_hg19_v1_chr4_+_165878104 AK056221 NM_153027	1292978	+	AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK056221|C4orf39|152756|chromosome 4 open reading frame 39##NM_153027|C4orf39|152756|chromosome 4 open reading frame 39	0.805224	0.0	denovo_WM_7:-21:0.690
chr11	124285390	124285516	reg1000344.p1	14.576	+	NM_001005467	-18207	-	NM_001005468	-32215	-	AF162668 NM_001002918 BC137043 BC137045	-95316	-	NM_001005196 BC136865 BC136866	9324	-	AF238488 HQ258145 NM_012378 BC130393 BC130419	25563	-	NM_001005195 BC136863 BC136864	128108	-	NM_001005467|OR8B3|390271|olfactory receptor, family 8, subfamily B, member 3##NM_001005468|OR8B2|26595|olfactory receptor, family 8, subfamily B, member 2##AF162668|OR8D2|283160|olfactory receptor, family 8, subfamily D, member 2##NM_001002918|OR8D2|283160|olfactory receptor, family 8, subfamily D, member 2##BC137043|OR8D2|283160|olfactory receptor, family 8, subfamily D, member 2##BC137045|OR8D2|283160|olfactory receptor, family 8, subfamily D, member 2##NM_001005196|OR8B4|283162|olfactory receptor, family 8, subfamily B, member 4##BC136865|OR8B4|283162|olfactory receptor, family 8, subfamily B, member 4##BC136866|OR8B4|283162|olfactory receptor, family 8, subfamily B, member 4##AF238488|OR8B8|26493|olfactory receptor, family 8, subfamily B, member 8##HQ258145|OR8B8|26493|olfactory receptor, family 8, subfamily B, member 8##NM_012378|OR8B8|26493|olfactory receptor, family 8, subfamily B, member 8##BC130393|OR8B8|26493|olfactory receptor, family 8, subfamily B, member 8##BC130419|OR8B8|26493|olfactory receptor, family 8, subfamily B, member 8##NM_001005195|OR8B12|219858|olfactory receptor, family 8, subfamily B, member 12##BC136863|OR8B12|219858|olfactory receptor, family 8, subfamily B, member 12##BC136864|OR8B12|219858|olfactory receptor, family 8, subfamily B, member 12	0.996926	0.033294	
chr14	23259520	23259674	reg1000531.p1	14.566	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-23752	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-192408	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-201463	-	TSC_hg19_v1_chr14_-_23284568 AK025377	24982	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	25035	-	AB020532 BX161519 NM_001126105	25461	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	1.734837	0.0	denovo_WM_7:-37:0.231	denovo_WM_7:-39:0.459	denovo_WM_7:-52:0.259	denovo_WM_7:-54:0.446
chrX	122547319	122547494	reg1000391.p1	14.565	+	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	-229166	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-2365966	+	BC029540 NM_001080141 NM_001080146	-2427769	-	TSC_hg19_v1_chrX_-_122866885 AK001758	319477	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	319491	-	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	446536	+	NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2##AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis	1.992079	0.0	
chr7	41005443	41005623	reg1000421.p1	14.558	+	AK299133 TSC_hg19_v1_chr7_+_40174603 AK296048 AK308764 AK307935 AK298516	-830924	+	AF397013 TSC_hg19_v1_chr7_+_40174572 AK021870 NM_001193311 NM_001193312 NM_001193313 NM_024728 BC098117 BC098261 BC098310 BC098318	-831002	+	TSC_hg19_v1_chr7_-_40174219 BC026265 NM_138701	-831402	-	AF218018 AK290584 BC007858 D49743 TSC_hg19_v1_chr7_-_41742684 NM_002192	737152	-	NM_000168	1271084	-	TSC_hg19_v1_chr7_-_42276797 AK308429	1271262	-	AK299133|C7orf10|79783|chromosome 7 open reading frame 10##AK296048|C7orf10|79783|chromosome 7 open reading frame 10##AK308764|C7orf10|79783|chromosome 7 open reading frame 10##AK307935|C7orf10|79783|chromosome 7 open reading frame 10##AK298516|C7orf10|79783|chromosome 7 open reading frame 10##AF397013|C7orf10|79783|chromosome 7 open reading frame 10##AK021870|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193311|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193312|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193313|C7orf10|79783|chromosome 7 open reading frame 10##NM_024728|C7orf10|79783|chromosome 7 open reading frame 10##BC098117|C7orf10|79783|chromosome 7 open reading frame 10##BC098261|C7orf10|79783|chromosome 7 open reading frame 10##BC098310|C7orf10|79783|chromosome 7 open reading frame 10##BC098318|C7orf10|79783|chromosome 7 open reading frame 10##BC026265|C7orf11|136647|chromosome 7 open reading frame 11##NM_138701|C7orf11|136647|chromosome 7 open reading frame 11##AF218018|INHBA|3624|inhibin, beta A##AK290584|INHBA|3624|inhibin, beta A##BC007858|INHBA|3624|inhibin, beta A##D49743|INHBA|3624|inhibin, beta A##NM_002192|INHBA|3624|inhibin, beta A##NM_000168|GLI3|2737|GLI family zinc finger 3##AK308429|GLI3|2737|GLI family zinc finger 3	0.0	0.0	
chr12	50147659	50147819	reg1000414.p1	14.551	+	BC036203 TSC_hg19_v1_chr12_+_50135987	-11768	+	NM_001098576 AK124849	-12147	+	TSC_hg19_v1_chr12_+_50135353 AK312238 BC000916 AF033095	-12381	+	TSC_hg19_v1_chr12_+_50156978 AK026605	9289	+	TSC_hg19_v1_chr12_-_50222197 NM_001037806	74460	-	CU690986 BC053560 BC040957 AK292194 NM_181708	89150	-	BC036203|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001098576|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK124849|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK312238|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##BC000916|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AF033095|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK026605|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001037806|NCKAP5L|57701|NCK-associated protein 5-like##BC053560|BCDIN3D|144233|BCDIN3 domain containing##BC040957|BCDIN3D|144233|BCDIN3 domain containing##AK292194|BCDIN3D|144233|BCDIN3 domain containing##NM_181708|BCDIN3D|144233|BCDIN3 domain containing	0.99834	0.0	denovo_WM_7:-22:0.457	denovo_WM_7:-23:0.457
chr20	45979081	45979227	reg1000313.p2	14.542	+	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-2507	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-51585	-	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-455602	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	6334	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	151468	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	151530	+	DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3	1.070166	0.0	
chr9	139595392	139595535	reg1000481.p1	14.530	+	TSC_hg19_v1_chr9_-_139581926 NM_001012727 NM_006412	-13548	-	AF011374 TSC_hg19_v1_chr9_-_139581883 AF000237	-13586	-	TSC_hg19_v1_chr9_-_139581856 BC004529 BC019292 U56418 BC000026	-13624	-	TSC_hg19_v1_chr9_+_139607008 NM_152421 BC032097 CU689268	11553	+	BC061888 TSC_hg19_v1_chr9_-_139622638 BC055011 BC059956 AK054908 AK090585 BC042369 BC042667	27160	-	AY301271 BC133045 BC144440 BC144441 BC171741 NM_001001712	41919	-	NM_001012727|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##NM_006412|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##AF011374|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##AF000237|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC004529|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC019292|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##U56418|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC000026|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##NM_152421|FAM69B|138311|family with sequence similarity 69, member B##BC032097|FAM69B|138311|family with sequence similarity 69, member B##BC061888|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC055011|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC059956|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##AK054908|SNORA43|677824|small nucleolar RNA, H/ACA box 43##AK090585|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC042369|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC042667|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##AY301271|LCN10|414332|lipocalin 10##BC133045|LCN10|414332|lipocalin 10##BC144440|LCN10|414332|lipocalin 10##BC144441|LCN10|414332|lipocalin 10##BC171741|LCN10|414332|lipocalin 10##NM_001001712|LCN10|414332|lipocalin 10	0.99897	0.0	denovo_WM_7:-36:0.314	denovo_WM_7:-37:0.314	denovo_WM_7:-38:0.314
chr11	30367761	30367895	reg1000285.p2	14.528	+	TSC_hg19_v1_chr11_+_30344653 AK096287 NM_152316 BX647617 BC047775	-23176	+	NM_000510 NM_001018080	-115266	+	M55514 TSC_hg19_v1_chr11_-_30038533 AK311228 NM_002233	-329297	-	CU689190 NM_001584 U57911	234151	-	TSC_hg19_v1_chr11_-_30605748 AK309809	237920	-	TSC_hg19_v1_chr11_-_30607762 AB209163 AK314833 NM_001145399	240017	-	AK096287|C11orf46|120534|chromosome 11 open reading frame 46##NM_152316|C11orf46|120534|chromosome 11 open reading frame 46##BX647617|C11orf46|120534|chromosome 11 open reading frame 46##BC047775|C11orf46|120534|chromosome 11 open reading frame 46##NM_000510|FSHB|2488|follicle stimulating hormone, beta polypeptide##NM_001018080|FSHB|2488|follicle stimulating hormone, beta polypeptide##M55514|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##AK311228|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_002233|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_001584|MPPED2|744|metallophosphoesterase domain containing 2##U57911|MPPED2|744|metallophosphoesterase domain containing 2##AK309809|MPPED2|744|metallophosphoesterase domain containing 2##AB209163|MPPED2|744|metallophosphoesterase domain containing 2##AK314833|MPPED2|744|metallophosphoesterase domain containing 2##NM_001145399|MPPED2|744|metallophosphoesterase domain containing 2	1.212807	0.96142	CTCF.p2:0:0.961
chr14	94647126	94647264	reg1000480.p1	14.519	+	NM_020958 NM_058237 BC002650 BC068491 AB046842 AB385489 CU686649	-6471	+	TSC_hg19_v1_chr14_-_94595942 NM_032036	-51255	-	BC032626 TSC_hg19_v1_chr14_-_94595922 AF208232	-51277	-	AF181467 NM_016186	112165	-	TSC_hg19_v1_chr14_-_94759564 AY358597 AK314877	112367	-	BX248011 NM_001100607 TSC_hg19_v1_chr14_-_94759609 BC022261	112409	-	NM_020958|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##NM_058237|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##BC002650|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##BC068491|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##AB046842|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##NM_032036|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##BC032626|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##AF208232|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##AF181467|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##NM_016186|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##AY358597|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##AK314877|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##BX248011|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##NM_001100607|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##BC022261|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	0.020385	0.027351	
chr1	192485970	192486123	reg1000436.p1	14.502	+	AY643711 NM_001039152	-199925	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-358443	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-2039311	-	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	58862	+	NM_002927 NM_144766 AF030107 BC016667	119238	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	292138	+	AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa	0.925872	0.0	denovo_WM_7:-21:0.622	denovo_WM_7:-22:0.304
chr3	48957326	48957482	reg1000470.p1	14.495	+	AK097724 NM_001123040	-587	-	TSC_hg19_v1_chr3_+_48956280 NM_006321 BC000422	-1121	+	TSC_hg19_v1_chr3_+_48956261 AK223550	-1148	+	TSC_hg19_v1_chr3_+_49027682 BC047566 NM_177938 NM_177939 AL713728 BC011710 AY198406 BC018731	70097	+	BC060321 TSC_hg19_v1_chr3_+_49027877 CU680020 AK000269	70456	+	AK295145 NM_018031 TSC_hg19_v1_chr3_+_49044739	87212	+	AK097724|C3orf71|646450|chromosome 3 open reading frame 71##NM_001123040|C3orf71|646450|chromosome 3 open reading frame 71##NM_006321|ARIH2|10425|ariadne homolog 2 (Drosophila)##BC000422|ARIH2|10425|ariadne homolog 2 (Drosophila)##AK223550|ARIH2|10425|ariadne homolog 2 (Drosophila)##BC047566|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##NM_177938|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##NM_177939|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AL713728|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC011710|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AY198406|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC018731|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC060321|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AK000269|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AK295145|WDR6|11180|WD repeat domain 6##NM_018031|WDR6|11180|WD repeat domain 6	0.99591	0.0	
chr16	3930676	3930784	reg1000347.p1	14.490	+	TSC_hg19_v1_chr16_-_3930715 U85962	-13	-	TSC_hg19_v1_chr16_-_3930711 U47741	-32	-	AB210043 NM_001079846 NM_004380	-610	-	BC136657 BC136658 TSC_hg19_v1_chr16_-_4165831	235089	-	BC151207 AB011092 BC151229 TSC_hg19_v1_chr16_-_4166045	235304	-	AJ133123 NM_001116 TSC_hg19_v1_chr16_-_4166252	235500	-	U85962|CREBBP|1387|CREB binding protein##U47741|CREBBP|1387|CREB binding protein##AB210043|CREBBP|1387|CREB binding protein##NM_001079846|CREBBP|1387|CREB binding protein##NM_004380|CREBBP|1387|CREB binding protein##BC136657|ADCY9|115|adenylate cyclase 9##BC136658|ADCY9|115|adenylate cyclase 9##BC151207|ADCY9|115|adenylate cyclase 9##AB011092|ADCY9|115|adenylate cyclase 9##BC151229|ADCY9|115|adenylate cyclase 9##AJ133123|ADCY9|115|adenylate cyclase 9##NM_001116|ADCY9|115|adenylate cyclase 9	1.400083	0.0	denovo_WM_7:-7:0.965	denovo_WM_7:8:0.402
chr2	114681267	114681396	reg1000317.p1	14.486	+	AB209353 TSC_hg19_v1_chr2_+_114674521	-6818	+	TSC_hg19_v1_chr2_+_114647862 AB527566 CU692216	-33481	+	TSC_hg19_v1_chr2_+_114647707 AK312659	-33623	+	BC030832 NM_020868	518567	+	AK055256 BC038514 NM_001178036	537835	+	NM_001178037 DQ857321	1140959	+	AB209353|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK312659|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##BC030832|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_020868|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178037|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857321|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)	1.020336	0.0	denovo_WM_7:-14:0.248	denovo_WM_7:-15:0.640
chr10	103113624	103113772	reg1000439.p1	14.479	+	BC136321 BC069156 NM_006562 X90828	-124996	-	BC130530 NM_001195517 NM_005521 S38742 M75952 AB464289	-222520	+	BC019674 NM_001085398	-222796	-	TSC_hg19_v1_chr10_+_103113869 NM_003939 NM_033637 AK313417 CR749295 AF129530 Y14153 BC027994 GU727631 AK313353 AY207475 AY207476 AK295870 AB587367 AF101784 CU693362	174	+	BC003548 TSC_hg19_v1_chr10_-_103347917 BC068529 AK292225 AJ131890 AK293602	234231	-	TSC_hg19_v1_chr10_-_103348007 AK293421 AK300862 AK022476 AK293657 AK021600 NM_001174084 NM_001174085 NM_013274	234311	-	BC136321|LBX1|10660|ladybird homeobox 1##BC069156|LBX1|10660|ladybird homeobox 1##NM_006562|LBX1|10660|ladybird homeobox 1##X90828|LBX1|10660|ladybird homeobox 1##BC130530|TLX1|3195|T-cell leukemia homeobox 1##NM_001195517|TLX1|3195|T-cell leukemia homeobox 1##NM_005521|TLX1|3195|T-cell leukemia homeobox 1##S38742|TLX1|3195|T-cell leukemia homeobox 1##M75952|TLX1|3195|T-cell leukemia homeobox 1##BC019674|TLX1NB|100038246|TLX1 neighbor##NM_001085398|TLX1NB|100038246|TLX1 neighbor##NM_003939|BTRC|8945|beta-transducin repeat containing##NM_033637|BTRC|8945|beta-transducin repeat containing##AK313417|BTRC|8945|beta-transducin repeat containing##CR749295|BTRC|8945|beta-transducin repeat containing##AF129530|BTRC|8945|beta-transducin repeat containing##Y14153|BTRC|8945|beta-transducin repeat containing##BC027994|BTRC|8945|beta-transducin repeat containing##GU727631|BTRC|8945|beta-transducin repeat containing##AK313353|BTRC|8945|beta-transducin repeat containing##AY207475|BTRC|8945|beta-transducin repeat containing##AY207476|BTRC|8945|beta-transducin repeat containing##AK295870|BTRC|8945|beta-transducin repeat containing##AF101784|BTRC|8945|beta-transducin repeat containing##BC003548|POLL|27343|polymerase (DNA directed), lambda##BC068529|POLL|27343|polymerase (DNA directed), lambda##AK292225|POLL|27343|polymerase (DNA directed), lambda##AJ131890|POLL|27343|polymerase (DNA directed), lambda##AK293602|POLL|27343|polymerase (DNA directed), lambda##AK293421|POLL|27343|polymerase (DNA directed), lambda##AK300862|POLL|27343|polymerase (DNA directed), lambda##AK022476|POLL|27343|polymerase (DNA directed), lambda##AK293657|POLL|27343|polymerase (DNA directed), lambda##AK021600|POLL|27343|polymerase (DNA directed), lambda##NM_001174084|POLL|27343|polymerase (DNA directed), lambda##NM_001174085|POLL|27343|polymerase (DNA directed), lambda##NM_013274|POLL|27343|polymerase (DNA directed), lambda	0.0	0.0	
chr15	23075986	23076121	reg1000415.p1	14.478	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-41637	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-41686	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-41719	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	10321	-	BC025678 NM_001142275	10789	-	TSC_hg19_v1_chr15_-_23115247 BC044583	39195	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	0.996525	0.066683	denovo_WM_7:-36:0.718
chr4	83295161	83295310	reg1000401.p1	14.476	+	AK300149 TSC_hg19_v1_chr4_-_83295145 AK292707 AK303552 NM_001003810 NM_002138 NM_031369 NM_031370	-82	-	TSC_hg19_v1_chr4_-_83295122 D55674 AK057836 D55672 BC023977 BC026015	-155	-	AF039575 X03910 AB463729 DQ892240 DQ895440 BC002401 TSC_hg19_v1_chr4_-_83294907	-363	-	X75683 TSC_hg19_v1_chr4_-_83347247	52000	-	TSC_hg19_v1_chr4_-_83347780 AK057480	52547	-	D89678 AK300122 AY453824 AB066484 CU675641 TSC_hg19_v1_chr4_-_83350547	55264	-	AK300149|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK292707|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK303552|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_001003810|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_002138|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_031369|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_031370|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55674|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK057836|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55672|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC023977|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC026015|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AF039575|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##X03910|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ892240|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ895440|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC002401|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##X75683|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AK057480|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##D89678|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AK300122|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AY453824|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AB066484|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like	0.923587	0.0	denovo_WM_7:-8:0.467	denovo_WM_7:-11:0.234
chr7	72476360	72476524	reg1000498.p1	14.475	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-51200	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-79568	+	TSC_hg19_v1_chr7_+_72395623 AK123814 AB289621	-80817	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	92589	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	246382	-	AK057366 AY081948 AY081949 NM_178125	265642	-	BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##AK123814|POM121|9883|POM121 membrane glycoprotein##AB289621|POM121|9883|POM121 membrane glycoprotein##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50	0.0	0.0	
chr1	21444151	21444331	reg1000422.p1	14.474	+	AF012072 NM_003760	-6366	-	TSC_hg19_v1_chr1_-_21415672 AK302087	-28555	-	BC136643 BC144335 TSC_hg19_v1_chr1_-_21377462 AK225489	-66775	-	BC030578 NM_001198803	56998	-	TSC_hg19_v1_chr1_-_21503344 BC072413 AB209119	59083	-	TSC_hg19_v1_chr1_-_21503387 NM_001198801 NM_001198802	59129	-	AF012072|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_003760|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK302087|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC136643|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC144335|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK225489|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC030578|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198803|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC072413|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AB209119|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198801|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198802|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3	1.282989	0.0	denovo_WM_7:-3:0.216
chr1	45518762	45518893	reg1000395.p2	14.473	+	TSC_hg19_v1_chr1_+_45478442 AK293702	-40376	+	TSC_hg19_v1_chr1_+_45477917 AF104421 AF104422 AF104423 AF104424 AF104425 AF104426 AF104427 AF104428 AF104429 AF104430 AF104431 AF104432 AF104433 AF104434 AF104435 AF104436 AF104437 AF104438 AF104439 AF104440 AK295284 M14016 BX647308 AK225053 AK308996 DQ890688 DQ893870 AB529048 BT006737 CR456976 CR542057	-40901	+	TSC_hg19_v1_chr1_+_45477906 AK291877 AK309446 AK310208 AK309724 AK315878 BC001778	-40929	+	TSC_hg19_v1_chr1_-_45672278 AB040944 NM_020883	153424	-	TSC_hg19_v1_chr1_+_45769564 BC035497	250748	+	NM_032756 BC007293	273733	+	AK293702|UROD|7389|uroporphyrinogen decarboxylase##AF104421|UROD|7389|uroporphyrinogen decarboxylase##AF104422|UROD|7389|uroporphyrinogen decarboxylase##AF104423|UROD|7389|uroporphyrinogen decarboxylase##AF104424|UROD|7389|uroporphyrinogen decarboxylase##AF104425|UROD|7389|uroporphyrinogen decarboxylase##AF104426|UROD|7389|uroporphyrinogen decarboxylase##AF104427|UROD|7389|uroporphyrinogen decarboxylase##AF104428|UROD|7389|uroporphyrinogen decarboxylase##AF104429|UROD|7389|uroporphyrinogen decarboxylase##AF104430|UROD|7389|uroporphyrinogen decarboxylase##AF104431|UROD|7389|uroporphyrinogen decarboxylase##AF104432|UROD|7389|uroporphyrinogen decarboxylase##AF104433|UROD|7389|uroporphyrinogen decarboxylase##AF104434|UROD|7389|uroporphyrinogen decarboxylase##AF104435|UROD|7389|uroporphyrinogen decarboxylase##AF104436|UROD|7389|uroporphyrinogen decarboxylase##AF104437|UROD|7389|uroporphyrinogen decarboxylase##AF104438|UROD|7389|uroporphyrinogen decarboxylase##AF104439|UROD|7389|uroporphyrinogen decarboxylase##AF104440|UROD|7389|uroporphyrinogen decarboxylase##AK295284|UROD|7389|uroporphyrinogen decarboxylase##M14016|UROD|7389|uroporphyrinogen decarboxylase##BX647308|UROD|7389|uroporphyrinogen decarboxylase##AK225053|UROD|7389|uroporphyrinogen decarboxylase##AK308996|UROD|7389|uroporphyrinogen decarboxylase##DQ890688|UROD|7389|uroporphyrinogen decarboxylase##DQ893870|UROD|7389|uroporphyrinogen decarboxylase##BT006737|UROD|7389|uroporphyrinogen decarboxylase##CR456976|UROD|7389|uroporphyrinogen decarboxylase##CR542057|UROD|7389|uroporphyrinogen decarboxylase##AK291877|UROD|7389|uroporphyrinogen decarboxylase##AK309446|UROD|7389|uroporphyrinogen decarboxylase##AK310208|UROD|7389|uroporphyrinogen decarboxylase##AK309724|UROD|7389|uroporphyrinogen decarboxylase##AK315878|UROD|7389|uroporphyrinogen decarboxylase##BC001778|UROD|7389|uroporphyrinogen decarboxylase##AB040944|ZSWIM5|57643|zinc finger, SWIM-type containing 5##NM_020883|ZSWIM5|57643|zinc finger, SWIM-type containing 5##BC035497|LOC400752|400752|uncharacterized LOC400752##NM_032756|HPDL|84842|4-hydroxyphenylpyruvate dioxygenase-like##BC007293|HPDL|84842|4-hydroxyphenylpyruvate dioxygenase-like	0.99126	0.0	denovo_WM_7:-17:0.303	denovo_WM_7:-18:0.303	denovo_WM_7:-19:0.303
chr5	159846349	159846529	reg1000400.p2	14.458	+	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	-334	-	BC032603 TSC_hg19_v1_chr5_-_159827053 NM_022090	-19356	-	TSC_hg19_v1_chr5_-_159797619 BC054506 BC011699 AF329836 AB590457 AY358839 NM_031908	-48807	-	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	2415	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	2464	+	AK025130 TSC_hg19_v1_chr5_-_160112393	265900	-	AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC032603|C5orf54|63920|chromosome 5 open reading frame 54##NM_022090|C5orf54|63920|chromosome 5 open reading frame 54##BC054506|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC011699|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AF329836|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AY358839|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##NM_031908|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK025130|ATP10B|23120|ATPase, class V, type 10B	1.99921	0.0	denovo_WM_7:5:0.739	denovo_WM_7:-84:0.419	denovo_WM_7:-85:0.419
chr7	5570333	5570420	reg1000239.p1	14.456	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-167	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-1130	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-1535	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	62062	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	62134	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	250846	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.682336	0.0	denovo_WM_7:26:0.586
chr13	46756399	46756553	reg1000385.p1	14.439	+	TSC_hg19_v1_chr13_-_46756327 BC053839 M34426 BC010271 AK223305 AK093568 NM_002298	-84	-	TSC_hg19_v1_chr13_-_46756297 BC007673 AB208984 AK312393	-168	-	TSC_hg19_v1_chr13_-_46756291 J02923	-184	-	AK300183 BC032311 BC043488 TSC_hg19_v1_chr13_-_46961376 AK307854	204869	-	TSC_hg19_v1_chr13_-_46961379 AK025215 AK293034	204908	-	NM_025113	205158	-	BC053839|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##M34426|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##BC010271|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AK223305|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##NM_002298|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##BC007673|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AB208984|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AK312393|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##J02923|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AK300183|KIAA0226L|80183|KIAA0226-like##BC032311|KIAA0226L|80183|KIAA0226-like##BC043488|KIAA0226L|80183|KIAA0226-like##AK307854|KIAA0226L|80183|KIAA0226-like##AK025215|KIAA0226L|80183|KIAA0226-like##AK293034|KIAA0226L|80183|KIAA0226-like##NM_025113|KIAA0226L|80183|KIAA0226-like	0.990736	0.0	denovo_WM_7:37:0.237	denovo_WM_7:38:0.237	denovo_WM_7:39:0.237	denovo_WM_7:40:0.237
chr9	36550688	36550838	reg1000262.p1	14.434	+	TSC_hg19_v1_chr9_-_36401191 NM_194330	-149588	-	TSC_hg19_v1_chr9_-_36400891 AK093480 AX748155 AF394047 NM_194328 NM_194332	-149866	-	AL136817 BC033786 NM_022781 NM_194329	-150510	-	TSC_hg19_v1_chr9_+_36572891 AK222811 AK296820 D79997 AK302374 AK293284 AK293423 AK300761 AK293447 AK309470 BC014039 NM_014791 AB183428 AK299164 AK300821 AB183427 AK301131	22161	+	TSC_hg19_v1_chr9_-_37034361 NM_016734	483653	-	TSC_hg19_v1_chr9_+_37079908 AK091718	529143	+	NM_194330|RNF38|152006|ring finger protein 38##AK093480|RNF38|152006|ring finger protein 38##AX748155|RNF38|152006|ring finger protein 38##AF394047|RNF38|152006|ring finger protein 38##NM_194328|RNF38|152006|ring finger protein 38##NM_194332|RNF38|152006|ring finger protein 38##AL136817|RNF38|152006|ring finger protein 38##BC033786|RNF38|152006|ring finger protein 38##NM_022781|RNF38|152006|ring finger protein 38##NM_194329|RNF38|152006|ring finger protein 38##AK222811|MELK|9833|maternal embryonic leucine zipper kinase##AK296820|MELK|9833|maternal embryonic leucine zipper kinase##D79997|MELK|9833|maternal embryonic leucine zipper kinase##AK302374|MELK|9833|maternal embryonic leucine zipper kinase##AK293284|MELK|9833|maternal embryonic leucine zipper kinase##AK293423|MELK|9833|maternal embryonic leucine zipper kinase##AK300761|MELK|9833|maternal embryonic leucine zipper kinase##AK293447|MELK|9833|maternal embryonic leucine zipper kinase##AK309470|MELK|9833|maternal embryonic leucine zipper kinase##BC014039|MELK|9833|maternal embryonic leucine zipper kinase##NM_014791|MELK|9833|maternal embryonic leucine zipper kinase##AB183428|MELK|9833|maternal embryonic leucine zipper kinase##AK299164|MELK|9833|maternal embryonic leucine zipper kinase##AK300821|MELK|9833|maternal embryonic leucine zipper kinase##AB183427|MELK|9833|maternal embryonic leucine zipper kinase##AK301131|MELK|9833|maternal embryonic leucine zipper kinase##NM_016734|PAX5|5079|paired box 5##AK091718|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene	0.954758	0.0	denovo_WM_7:-77:0.833
chr19	17281571	17281751	reg1000509.p3	14.424	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-95068	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-95340	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-144121	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	44511	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	44544	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	55373	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	0.999724	0.0	denovo_WM_7:-8:0.230	denovo_WM_7:-9:0.230	denovo_WM_7:-10:0.230	denovo_WM_7:-11:0.230
chr1	151168918	151169065	reg1000357.p2	14.423	+	TSC_hg19_v1_chr1_-_151162674 AK310045 DQ655941	-6318	-	DQ892940 DQ896189 AB464341 BT019356 BT019357 AK222935 AK222939 TSC_hg19_v1_chr1_-_151162644 BC003151 D43642 NM_005997 AK225130 AK297565	-6370	-	AF165217 AK313280 AK092700 AK300675 AX747678 BC017810 BX647346 AF177173 NM_013353	-20506	-	TSC_hg19_v1_chr1_+_151171050 AK309826 NM_001135636 NM_001135637 NM_001135638 NM_003557 AK295691 BC007833 U78576 BC007005 U78577 U78575 AK291015	2042	+	TSC_hg19_v1_chr1_+_151227206 NM_002810 U24704	58206	+	TSC_hg19_v1_chr1_+_151227209 BC072008	58230	+	AK310045|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ655941|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ892940|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ896189|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019356|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019357|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222935|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222939|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BC003151|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##D43642|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##NM_005997|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK225130|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK297565|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AF165217|TMOD4|29765|tropomodulin 4 (muscle)##AK313280|TMOD4|29765|tropomodulin 4 (muscle)##AK092700|TMOD4|29765|tropomodulin 4 (muscle)##AK300675|TMOD4|29765|tropomodulin 4 (muscle)##BC017810|TMOD4|29765|tropomodulin 4 (muscle)##BX647346|TMOD4|29765|tropomodulin 4 (muscle)##AF177173|TMOD4|29765|tropomodulin 4 (muscle)##NM_013353|TMOD4|29765|tropomodulin 4 (muscle)##AK309826|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135636|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135637|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135638|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_003557|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK295691|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##BC007833|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78576|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78577|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78575|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK291015|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_002810|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##U24704|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC072008|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	0.99645	0.986486	CTCF.p2:-37:0.986
chr3	149303290	149303412	reg1000375.p1	14.420	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-110862	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-110949	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-207809	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	72384	-	AK022036 NM_001168278	117708	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	166888	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.939696	0.0	denovo_WM_7:1:0.545
chr19	15202826	15202961	reg1000350.p1	14.407	+	BC140930 AB529304 NM_001004713	-5060	+	EU502748 AK313992 NM_012114	-42651	+	AK097684 NM_173482 BC035678	-81347	+	TSC_hg19_v1_chr19_+_15218213 AK123686 NM_033025 AK315453 BC029926 CU688794	15298	+	BC126913 CU680024 CU680048 TSC_hg19_v1_chr19_-_15235944	32953	-	BC000109 TSC_hg19_v1_chr19_-_15236004	33095	-	BC140930|OR1I1|126370|olfactory receptor, family 1, subfamily I, member 1##NM_001004713|OR1I1|126370|olfactory receptor, family 1, subfamily I, member 1##EU502748|CASP14|23581|caspase 14, apoptosis-related cysteine peptidase##AK313992|CASP14|23581|caspase 14, apoptosis-related cysteine peptidase##NM_012114|CASP14|23581|caspase 14, apoptosis-related cysteine peptidase##AK097684|CCDC105|126402|coiled-coil domain containing 105##NM_173482|CCDC105|126402|coiled-coil domain containing 105##BC035678|CCDC105|126402|coiled-coil domain containing 105##AK123686|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##NM_033025|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##AK315453|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##BC029926|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##BC126913|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC000109|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like	2.028342	0.997678	CTCF.p2:-34:0.998	denovo_WM_7:44:0.949
chr2	122406964	122407142	reg1000418.p1	14.399	+	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	-31	-	AK297259 TSC_hg19_v1_chr2_-_122247924	-159134	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-247898	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	592	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	87412	-	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	106184	+	BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin	1.988061	0.0	denovo_WM_7:-5:0.757	denovo_WM_7:9:0.216	denovo_WM_7:10:0.647
chr17	884324	884470	reg1000451.p1	14.394	+	TSC_hg19_v1_chr17_-_882986 AB590045 NM_022463	-1397	-	BC009327 AK302073 NM_001205319	-117079	-	BC011550 TSC_hg19_v1_chr17_+_685611 BC050614 AK225128 AB590841 CU679954 CU690740	-198783	+	TSC_hg19_v1_chr17_+_900368 BC002324 NM_013337 AK000830 AK225453 AF155330	15958	+	TSC_hg19_v1_chr17_-_982210 AK299909	97828	-	AK295191 TSC_hg19_v1_chr17_-_1012323 NM_001092 BC036807	127912	-	NM_022463|NXN|64359|nucleoredoxin##BC009327|NXN|64359|nucleoredoxin##AK302073|NXN|64359|nucleoredoxin##NM_001205319|NXN|64359|nucleoredoxin##BC011550|RNMTL1|55178|RNA methyltransferase like 1##BC050614|RNMTL1|55178|RNA methyltransferase like 1##AK225128|RNMTL1|55178|RNA methyltransferase like 1##BC002324|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##NM_013337|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK000830|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK225453|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AF155330|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK299909|ABR|29|active BCR-related gene##AK295191|ABR|29|active BCR-related gene##NM_001092|ABR|29|active BCR-related gene##BC036807|ABR|29|active BCR-related gene	0.235081	0.095879	denovo_WM_7:-13:0.235
chr3	8398920	8399078	reg1000411.p1	14.388	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-1496101	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-1496200	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-3169508	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	144331	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	144516	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	144582	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	0.990824	0.0	denovo_WM_7:-31:0.237	denovo_WM_7:-32:0.237	denovo_WM_7:-33:0.237	denovo_WM_7:-34:0.237
chr2	182213050	182213230	reg1000348.p1	14.387	+	TSC_hg19_v1_chr2_+_181845809 AK314145	-367313	+	AF085362 BC003554 AB017644 TSC_hg19_v1_chr2_+_181845681	-367497	+	TSC_hg19_v1_chr2_+_181845369 BC092407	-367770	+	NM_000885	108478	+	BC055419 AJ504733 AJ508356 L12002 TSC_hg19_v1_chr2_+_182322149 AK303478 BC016671	108910	+	TSC_hg19_v1_chr2_+_182322277 X16983 AB527164	109182	+	AK314145|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AF085362|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC003554|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AB017644|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC092407|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##NM_000885|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC055419|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ504733|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ508356|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##L12002|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AK303478|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC016671|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##X16983|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	1.371228	0.0	denovo_WM_7:39:0.257
chr6	154568750	154568913	reg1000452.p3	14.375	+	EU360599 EU362990 NM_001145287	-161190	+	L29301 NM_000914 NM_001008503 NM_001008504 NM_001008505 NM_001145282 NM_001145283 NM_001145284 NM_001145285 NM_001145286 L25119 U12569 AB590577 AK309655 AK313901 AY225404 AY364230 AY036622 AY036623 AY309001 AY309005 AY309006 AY309007 AY309008 AY309009 BC074927 AY521028	-208271	+	DQ680044 NM_001145279 NM_001145280 EU340241 EU340242 EU340243 NM_001145281	-237199	+	BX647254 NM_001130699	82383	-	AK289917 AJ310566 NM_001130700 NM_015553 TSC_hg19_v1_chr6_-_154677938	109084	-	TSC_hg19_v1_chr6_-_154831690 BC060761	262840	-	EU360599|OPRM1|4988|opioid receptor, mu 1##EU362990|OPRM1|4988|opioid receptor, mu 1##NM_001145287|OPRM1|4988|opioid receptor, mu 1##L29301|OPRM1|4988|opioid receptor, mu 1##NM_000914|OPRM1|4988|opioid receptor, mu 1##NM_001008503|OPRM1|4988|opioid receptor, mu 1##NM_001008504|OPRM1|4988|opioid receptor, mu 1##NM_001008505|OPRM1|4988|opioid receptor, mu 1##NM_001145282|OPRM1|4988|opioid receptor, mu 1##NM_001145283|OPRM1|4988|opioid receptor, mu 1##NM_001145284|OPRM1|4988|opioid receptor, mu 1##NM_001145285|OPRM1|4988|opioid receptor, mu 1##NM_001145286|OPRM1|4988|opioid receptor, mu 1##L25119|OPRM1|4988|opioid receptor, mu 1##U12569|OPRM1|4988|opioid receptor, mu 1##AK313901|OPRM1|4988|opioid receptor, mu 1##AY225404|OPRM1|4988|opioid receptor, mu 1##AY364230|OPRM1|4988|opioid receptor, mu 1##AY036622|OPRM1|4988|opioid receptor, mu 1##AY036623|OPRM1|4988|opioid receptor, mu 1##AY309001|OPRM1|4988|opioid receptor, mu 1##AY309005|OPRM1|4988|opioid receptor, mu 1##AY309006|OPRM1|4988|opioid receptor, mu 1##AY309007|OPRM1|4988|opioid receptor, mu 1##AY309008|OPRM1|4988|opioid receptor, mu 1##AY309009|OPRM1|4988|opioid receptor, mu 1##BC074927|OPRM1|4988|opioid receptor, mu 1##AY521028|OPRM1|4988|opioid receptor, mu 1##DQ680044|OPRM1|4988|opioid receptor, mu 1##NM_001145279|OPRM1|4988|opioid receptor, mu 1##NM_001145280|OPRM1|4988|opioid receptor, mu 1##EU340241|OPRM1|4988|opioid receptor, mu 1##EU340242|OPRM1|4988|opioid receptor, mu 1##EU340243|OPRM1|4988|opioid receptor, mu 1##NM_001145281|OPRM1|4988|opioid receptor, mu 1##BX647254|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_001130699|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##AK289917|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##AJ310566|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_001130700|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_015553|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##BC060761|CNKSR3|154043|CNKSR family member 3	0.999107	0.0	denovo_WM_7:-1:0.774
chr1	249116786	249116894	reg1000378.p1	14.372	+	NM_001004734 BC137188 BC137189	-271224	-	NM_001001824	-302656	-	NM_001001827 AB528813	-314281	-	AY358453 TSC_hg19_v1_chr1_-_249120082 AK056382 NM_030645	3268	-	TSC_hg19_v1_chr1_+_249132449 BC029310	15617	+	TSC_hg19_v1_chr1_+_249132534 AK025954 NM_024836 AK298016	15705	+	NM_001004734|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##BC137188|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##BC137189|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##NM_001001824|OR2T27|403239|olfactory receptor, family 2, subfamily T, member 27##NM_001001827|OR2T35|403244|olfactory receptor, family 2, subfamily T, member 35##AY358453|SH3BP5L|80851|SH3-binding domain protein 5-like##AK056382|SH3BP5L|80851|SH3-binding domain protein 5-like##NM_030645|SH3BP5L|80851|SH3-binding domain protein 5-like##BC029310|ZNF672|79894|zinc finger protein 672##AK025954|ZNF672|79894|zinc finger protein 672##NM_024836|ZNF672|79894|zinc finger protein 672##AK298016|ZNF672|79894|zinc finger protein 672	0.997575	0.0	denovo_WM_7:30:0.670	denovo_WM_7:31:0.260
chr17	80498130	80498269	reg1000472.p1	14.372	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-20609	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-81557	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-81636	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	108084	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	158335	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	176407	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	0.996668	0.0	denovo_WM_7:-36:0.826
chr12	67662877	67663006	reg1000563.p1	14.362	+	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	-590039	-	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	-590185	-	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-966612	+	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	161	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	231	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	489	+	AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1	0.0	0.0	
chr2	113191245	113191375	reg1000361.p1	14.347	+	NM_005054 U64675 NM_001164463	-147	-	TSC_hg19_v1_chr2_+_113033193 AK131416	-158108	+	TSC_hg19_v1_chr2_+_113033173 NM_198581	-158149	+	TSC_hg19_v1_chr2_+_113239732 BC036819	48416	+	TSC_hg19_v1_chr2_+_113239762 NM_153712	48456	+	TSC_hg19_v1_chr2_+_113239813 AB071393 CU691434 DQ894075	48562	+	NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001164463|RGPD8|727851|RANBP2-like and GRIP domain containing 8##AK131416|ZC3H6|376940|zinc finger CCCH-type containing 6##NM_198581|ZC3H6|376940|zinc finger CCCH-type containing 6##BC036819|TTL|150465|tubulin tyrosine ligase##NM_153712|TTL|150465|tubulin tyrosine ligase##AB071393|TTL|150465|tubulin tyrosine ligase##DQ894075|TTL|150465|tubulin tyrosine ligase	0.998717	0.0	denovo_WM_7:32:0.310	denovo_WM_7:33:0.310	denovo_WM_7:34:0.310
chr16	25236707	25236819	reg1000468.p1	14.344	+	AB013456 AF067797 NM_001169 AK222975 AK222964	-8463	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	-113566	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	-113702	+	BX648785 AK131342 NM_001012981 AK302399	32096	-	TSC_hg19_v1_chr16_-_25269141 AK303472	32442	-	AF105378 NM_006040	466583	+	AB013456|AQP8|343|aquaporin 8##AF067797|AQP8|343|aquaporin 8##NM_001169|AQP8|343|aquaporin 8##AK222975|AQP8|343|aquaporin 8##AK222964|AQP8|343|aquaporin 8##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##BX648785|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK131342|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##NM_001012981|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK302399|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK303472|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AF105378|HS3ST4|9951|heparan sulfate (glucosamine) 3-O-sulfotransferase 4##NM_006040|HS3ST4|9951|heparan sulfate (glucosamine) 3-O-sulfotransferase 4	0.999905	0.996814	CTCF.p2:3:0.997	denovo_WM_7:37:0.519	denovo_WM_7:38:0.463
chr6	32653559	32653730	reg1000333.p1	14.342	+	L34097 L34098 L34101 L34102 L34103 L34105 L34106 L34107 L40180 L42626 M17207 M22550 M59800 M59801 U66400 M17565 X00369 M35982 M57649 AF000447 U83585 AF291674 AY656681 M16996 X96420 M17563 M17564 AF522251 AB209580 TSC_hg19_v1_chr6_-_32634435 AK295476 AK295695 M60028 M20432 AK296613 AK316333 M25327 X03068 NM_001243961 NM_002123 M16276	-19204	-	AK130811 AK313975 NM_002122 TSC_hg19_v1_chr6_+_32605182 BC073977 BC051832 AB209628 X00452 L46875 L46876 L46877 L46878 L46879 L46880 L46881 U77589 M34996 M20431 L34082 L34083 L34084 L34085 L34090 L34094 M59802	-48401	+	AF010142 M16954 M16955 M16956 M16957 M16958 M16959 M17377 M17378 U31770 U17380 U17379 D86415 X99896 M28584 M30180 AF490771 AJ297582 AJ297583 AJ297584 AJ297585 AJ297587 AJ302075 AY626551 AY770514 AY935719 AY961062 AY961063 AY961064 AY961065 AY961066 AY961067 AY961069 AY961070 AY961071 AY961072 AY961073 AY961074 AY961076 AY961077 AY961078 DQ002917 DQ090958 EU375850 GQ891551 HM067843 HM067844 HM067847 HM067848 HM067849 HM067850 HM067852 HM067853 HM067854 HM067855 HM067856 HM067857 HM067858 HM067859 HM067860 HM067861 HM067862 HM067863 HM627215 M11161 M30179 AB528619 CU678949 CU689080 L02545 X99895 U84892 AJ697892 AJ697893 U95989 BC171883 M11867 M20504 M28583 L76133 U65585 BC033827 M20430 AB062112 M26038 BC007920 TSC_hg19_v1_chr6_-_32557583 M33600 BC108922 X12544 AK291499 X03069 AK225683 AK225690 AK289463 AK290388 BC008403 BC031023 AK291987 NM_001243965 NM_002124 AK293020	-96116	-	NM_020056 TSC_hg19_v1_chr6_+_32709167 L34094	55581	+	BC031995 AK098007 NM_001198858	77653	-	CR541811 CR541832 M26040 BC020226 AY645723 X03066 BC006097 AK301415 AK316197 NM_002120	131131	-	L34097|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34098|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34101|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34102|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34103|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34105|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34106|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34107|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L40180|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L42626|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17207|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M22550|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59800|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59801|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U66400|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17565|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X00369|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M35982|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M57649|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF000447|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U83585|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF291674|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AY656681|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16996|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X96420|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17563|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17564|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AB209580|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295476|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295695|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M60028|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M20432|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK296613|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK316333|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M25327|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X03068|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_001243961|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_002123|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16276|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK130811|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AK313975|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##NM_002122|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC073977|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC051832|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AB209628|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##X00452|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L46875|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##U77589|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M34996|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M20431|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34082|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34083|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34084|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34085|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34090|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M59802|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AF010142|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16954|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16955|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16956|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16957|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16959|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M17377|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M17378|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U31770|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##U17379|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##D86415|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28584|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30180|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF490771|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297582|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297587|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY626551|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY770514|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY935719|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961062|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961063|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961064|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961065|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961066|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961067|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961070|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961072|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961073|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961076|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961077|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961078|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ002917|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ090958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11161|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30179|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L02545|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##X99895|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ697892|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ697893|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11867|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20504|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L76133|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U65585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC033827|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20430|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AB062112|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M26038|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC007920|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M33600|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC108922|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291499|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##X03069|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK225683|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK225690|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK289463|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC008403|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC031023|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291987|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_001243965|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_002124|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK293020|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##NM_020056|HLA-DQA2|3118|major histocompatibility complex, class II, DQ alpha 2##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC031995|HLA-DQB2|3120|major histocompatibility complex, class II, DQ beta 2##AK098007|HLA-DQB2|3120|major histocompatibility complex, class II, DQ beta 2##NM_001198858|HLA-DQB2|3120|major histocompatibility complex, class II, DQ beta 2##CR541811|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##CR541832|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##M26040|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##BC020226|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##AY645723|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##X03066|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##BC006097|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##AK301415|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##AK316197|HLA-DOB|3112|major histocompatibility complex, class II, DO beta##NM_002120|HLA-DOB|3112|major histocompatibility complex, class II, DO beta	1.279113	0.0	denovo_WM_7:106:0.272	denovo_WM_7:107:0.632
chr6	129929176	129929315	reg1000424.p2	14.338	+	NM_000426 NM_001079823 Z26653	-724932	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1087589	-	AK124031 NM_001164687	-1689487	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	102081	-	NM_001010876	253170	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	410480	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.986628	0.0	
chr6	20529468	20529582	reg1000170.p3	14.335	+	CR749285 NM_001243076	-125492	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-127422	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	-316853	-	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	5198	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	1064847	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	1137134	+	CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340	0.994288	0.664622	CTCF.p2:-12:0.665	denovo_WM_7:-46:0.481
chr12	113634908	113635027	reg1000393.p1	14.327	+	AK075358 AK123762 AK027741 TSC_hg19_v1_chr12_+_113623525 AY007158 AK027733 NM_032848 AK222908	-11494	+	BC005848 BC001132 BC001848 AY148094 TSC_hg19_v1_chr12_-_113623279 AF478457 NM_001111322 NM_024072	-11720	-	AK308987 NM_001144872	-47363	+	TSC_hg19_v1_chr12_-_113658844 BC013151 NM_138451 AK127152	23895	-	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	24276	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	24313	+	AK075358|C12orf52|84934|chromosome 12 open reading frame 52##AK123762|C12orf52|84934|chromosome 12 open reading frame 52##AK027741|C12orf52|84934|chromosome 12 open reading frame 52##AY007158|C12orf52|84934|chromosome 12 open reading frame 52##AK027733|C12orf52|84934|chromosome 12 open reading frame 52##NM_032848|C12orf52|84934|chromosome 12 open reading frame 52##AK222908|C12orf52|84934|chromosome 12 open reading frame 52##BC005848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001132|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AY148094|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AF478457|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001111322|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_024072|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B##BC013151|IQCD|115811|IQ motif containing D##NM_138451|IQCD|115811|IQ motif containing D##AK127152|IQCD|115811|IQ motif containing D##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1	0.999887	0.848695	CTCF.p2:-29:0.849
chr9	132862062	132862194	reg1000312.p1	14.319	+	TSC_hg19_v1_chr9_+_132816199 AK026244 AK225456 BC030147 AF376725 AX776003 BC110518 AK293092 AB385490 AB046844	-45912	+	TSC_hg19_v1_chr9_+_132816196 BC143655	-45937	+	BC039728 NM_001136557 NM_001136558 NM_020960	-46144	+	AK024651 TSC_hg19_v1_chr9_+_132897386	35236	+	TSC_hg19_v1_chr9_+_132934685 BC004856 NM_014286 AF134479 AF186409 X84048 AB463656	72685	+	NM_001128826	100743	+	AK026244|GPR107|57720|G protein-coupled receptor 107##AK225456|GPR107|57720|G protein-coupled receptor 107##BC030147|GPR107|57720|G protein-coupled receptor 107##AF376725|GPR107|57720|G protein-coupled receptor 107##BC110518|GPR107|57720|G protein-coupled receptor 107##AK293092|GPR107|57720|G protein-coupled receptor 107##AB046844|GPR107|57720|G protein-coupled receptor 107##BC143655|GPR107|57720|G protein-coupled receptor 107##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107##AK024651|GPR107|57720|G protein-coupled receptor 107##BC004856|NCS1|23413|neuronal calcium sensor 1##NM_014286|NCS1|23413|neuronal calcium sensor 1##AF134479|NCS1|23413|neuronal calcium sensor 1##AF186409|NCS1|23413|neuronal calcium sensor 1##X84048|NCS1|23413|neuronal calcium sensor 1##NM_001128826|NCS1|23413|neuronal calcium sensor 1	3.940961	0.753955	CTCF.p2:0:0.754	denovo_WM_7:26:0.961	denovo_WM_7:-34:0.659	denovo_WM_7:41:0.961	denovo_WM_7:56:0.964
chr11	14353164	14353344	reg1000454.p2	14.310	+	TSC_hg19_v1_chr11_+_13984277 NM_006108 AK291780 AK074803 BC136513 BC136563 BC006262 AB051390	-368971	+	AY423606 BC017377 TSC_hg19_v1_chr11_+_13690267 AY600449	-662987	+	TSC_hg19_v1_chr11_+_13690255 AK315527 AK026381	-663001	+	AK309550 AK309683 NM_001177315 NM_001102669	26797	-	TSC_hg19_v1_chr11_-_14380730 BC013106 AK299606 AK313976 NM_012250	27423	-	AK300103 NM_001177314	32797	-	NM_006108|SPON1|10418|spondin 1, extracellular matrix protein##AK291780|SPON1|10418|spondin 1, extracellular matrix protein##AK074803|SPON1|10418|spondin 1, extracellular matrix protein##BC136513|SPON1|10418|spondin 1, extracellular matrix protein##BC136563|SPON1|10418|spondin 1, extracellular matrix protein##AB051390|SPON1|10418|spondin 1, extracellular matrix protein##AY423606|FAR1|84188|fatty acyl CoA reductase 1##BC017377|FAR1|84188|fatty acyl CoA reductase 1##AY600449|FAR1|84188|fatty acyl CoA reductase 1##AK315527|FAR1|84188|fatty acyl CoA reductase 1##AK026381|FAR1|84188|fatty acyl CoA reductase 1##AK309550|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK309683|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177315|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001102669|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##BC013106|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK299606|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK313976|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_012250|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK300103|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177314|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2	0.999889	0.0	
chr6_cox_hap2	4099247	4099422	reg1000342.p2	14.287	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.594587	0.0	denovo_WM_7:68:0.224
chr19	10683135	10683248	reg1000407.p2	14.279	+	TSC_hg19_v1_chr19_-_10679653 NM_001800 BC001822 NM_079421	-3553	-	CR542158 CU674892 U20498 DQ892872 DQ892951 DQ896120 AB464505 U49399 U40343 TSC_hg19_v1_chr19_-_10679530	-3762	-	TSC_hg19_v1_chr19_-_10676697 AK093879 AX748348 NM_023008 AK300850	-6494	-	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	14757	-	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	29942	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	53028	+	NM_001800|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##BC001822|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##NM_079421|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##CR542158|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U20498|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892872|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892951|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ896120|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U49399|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U40343|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##AK093879|KRI1|65095|KRI1 homolog (S. cerevisiae)##NM_023008|KRI1|65095|KRI1 homolog (S. cerevisiae)##AK300850|KRI1|65095|KRI1 homolog (S. cerevisiae)##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2	1.40003	0.320775	CTCF.p2:-1:0.321	denovo_WM_7:-34:0.285	denovo_WM_7:-49:0.534	denovo_WM_7:-52:0.362
chr15	78405700	78405814	reg1000455.p1	14.278	+	NM_001101404	-20831	+	TSC_hg19_v1_chr15_-_78370032 AB028978 BC152465 NM_015079 NM_144572	-35804	-	TSC_hg19_v1_chr15_-_77924732 AK291363	-480977	-	BT019962 CU690402 AB528675 AB012955 TSC_hg19_v1_chr15_-_78423867 AK293167 BC047381 BC057292 BC033108 NM_006383	18005	-	TSC_hg19_v1_chr15_+_78441718 AK299970 AK096721 AK296002 BC036227 NM_005530 AK315963 CR749548 BC021967 AK316051	35948	+	TSC_hg19_v1_chr15_+_78441734 AK222973	35977	+	NM_001101404|SH2D7|646892|SH2 domain containing 7##AB028978|TBC1D2B|23102|TBC1 domain family, member 2B##BC152465|TBC1D2B|23102|TBC1 domain family, member 2B##NM_015079|TBC1D2B|23102|TBC1 domain family, member 2B##NM_144572|TBC1D2B|23102|TBC1 domain family, member 2B##AK291363|LINGO1|84894|leucine rich repeat and Ig domain containing 1##BT019962|CIB2|10518|calcium and integrin binding family member 2##AB012955|CIB2|10518|calcium and integrin binding family member 2##AK293167|CIB2|10518|calcium and integrin binding family member 2##BC047381|CIB2|10518|calcium and integrin binding family member 2##BC057292|CIB2|10518|calcium and integrin binding family member 2##BC033108|CIB2|10518|calcium and integrin binding family member 2##NM_006383|CIB2|10518|calcium and integrin binding family member 2##AK299970|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK296002|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##BC036227|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##NM_005530|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK315963|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##CR749548|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##BC021967|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK316051|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK222973|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha	0.913849	0.985285	CTCF.p2:-10:0.985	denovo_WM_7:47:0.705
chr13	20771586	20771710	reg1000466.p1	14.268	+	TSC_hg19_v1_chr13_-_20767115 AK313595 NM_004004	-4537	-	BC017048 BC071703 TSC_hg19_v1_chr13_-_20767078 AK225966	-4590	-	NM_021954	-36466	-	NM_006783	33723	-	NM_001110219 NM_001110220 NM_001110221	34885	-	BC119660 BC119661 TSC_hg19_v1_chr13_-_21099959 AF160216 AF077049 AF087898 AK024041 BC071810 NM_015974	328325	-	AK313595|GJB2|2706|gap junction protein, beta 2, 26kDa##NM_004004|GJB2|2706|gap junction protein, beta 2, 26kDa##BC017048|GJB2|2706|gap junction protein, beta 2, 26kDa##BC071703|GJB2|2706|gap junction protein, beta 2, 26kDa##AK225966|GJB2|2706|gap junction protein, beta 2, 26kDa##NM_021954|GJA3|2700|gap junction protein, alpha 3, 46kDa##NM_006783|GJB6|10804|gap junction protein, beta 6, 30kDa##NM_001110219|GJB6|10804|gap junction protein, beta 6, 30kDa##NM_001110220|GJB6|10804|gap junction protein, beta 6, 30kDa##NM_001110221|GJB6|10804|gap junction protein, beta 6, 30kDa##BC119660|CRYL1|51084|crystallin, lambda 1##BC119661|CRYL1|51084|crystallin, lambda 1##AF160216|CRYL1|51084|crystallin, lambda 1##AF077049|CRYL1|51084|crystallin, lambda 1##AF087898|CRYL1|51084|crystallin, lambda 1##AK024041|CRYL1|51084|crystallin, lambda 1##BC071810|CRYL1|51084|crystallin, lambda 1##NM_015974|CRYL1|51084|crystallin, lambda 1	1.514471	0.790708	CTCF.p2:11:0.791	denovo_WM_7:-20:0.246	denovo_WM_7:-36:0.228	denovo_WM_7:-37:0.211
chr2	166984516	166984655	reg1000586.p1	14.268	+	AB093548 AB093549 AB098335 AY043484 AF225985 NM_001165963 NM_001165964 NM_006920 EU368119	-54431	-	AB073395 TSC_hg19_v1_chr2_-_166810287 AK057268 AK292942 BC055424 NM_024753	-174284	-	TSC_hg19_v1_chr2_-_166650773 NM_004482	-333799	-	EU368117 NM_001202435 DQ993522	21128	-	TSC_hg19_v1_chr2_-_167232465 AK307549 NM_002977	247895	-	BC141864 M91556 NM_002976	358893	-	AB093548|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##AB093549|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##AB098335|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##AY043484|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##AF225985|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##NM_001165963|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##NM_001165964|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##NM_006920|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##EU368119|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##AB073395|TTC21B|79809|tetratricopeptide repeat domain 21B##AK057268|TTC21B|79809|tetratricopeptide repeat domain 21B##AK292942|TTC21B|79809|tetratricopeptide repeat domain 21B##BC055424|TTC21B|79809|tetratricopeptide repeat domain 21B##NM_024753|TTC21B|79809|tetratricopeptide repeat domain 21B##NM_004482|GALNT3|2591|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)##EU368117|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##NM_001202435|SCN1A|6323|sodium channel, voltage-gated, type I, alpha subunit##AK307549|SCN9A|6335|sodium channel, voltage-gated, type IX, alpha subunit##NM_002977|SCN9A|6335|sodium channel, voltage-gated, type IX, alpha subunit##BC141864|SCN7A|6332|sodium channel, voltage-gated, type VII, alpha##M91556|SCN7A|6332|sodium channel, voltage-gated, type VII, alpha##NM_002976|SCN7A|6332|sodium channel, voltage-gated, type VII, alpha	1.009998	0.983722	denovo_WM_7:-13:0.314	denovo_WM_7:-14:0.314	denovo_WM_7:-15:0.314	CTCF.p2:25:0.984
chr3	42632048	42632193	reg1000579.p1	14.264	+	TSC_hg19_v1_chr3_-_42623460 BC006178 BC018437 AY359041 AK292856 AK293133 AK074576 NM_001201584 NM_004206 NM_032970	-8659	-	TSC_hg19_v1_chr3_+_42544134 AK298115 AK314334 L13288 BC064424 X75299 AB590664 EF577396	-87941	+	TSC_hg19_v1_chr3_+_42544108 AK294609 NM_001251883 NM_001251884 NM_001251885 NM_004624 AK293548	-88013	+	NM_016305 AF201950 TSC_hg19_v1_chr3_+_42632337	197	+	TSC_hg19_v1_chr3_+_42632351 BC017804 AK312225 DQ891965 EU176663 BC020444	259	+	L04288 TSC_hg19_v1_chr3_+_42642180 AK097208 BX538094 NM_005385 AK292017 BC144518 BX957218 CR749571 AB209888 BC072680 BC051318 BC035644 BC020672	10049	+	BC006178|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##BC018437|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##AY359041|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##AK292856|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##AK293133|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##AK074576|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##NM_001201584|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##NM_004206|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##NM_032970|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##AK298115|VIPR1|7433|vasoactive intestinal peptide receptor 1##AK314334|VIPR1|7433|vasoactive intestinal peptide receptor 1##L13288|VIPR1|7433|vasoactive intestinal peptide receptor 1##BC064424|VIPR1|7433|vasoactive intestinal peptide receptor 1##X75299|VIPR1|7433|vasoactive intestinal peptide receptor 1##EF577396|VIPR1|7433|vasoactive intestinal peptide receptor 1##AK294609|VIPR1|7433|vasoactive intestinal peptide receptor 1##NM_001251883|VIPR1|7433|vasoactive intestinal peptide receptor 1##NM_001251884|VIPR1|7433|vasoactive intestinal peptide receptor 1##NM_001251885|VIPR1|7433|vasoactive intestinal peptide receptor 1##NM_004624|VIPR1|7433|vasoactive intestinal peptide receptor 1##AK293548|VIPR1|7433|vasoactive intestinal peptide receptor 1##NM_016305|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##AF201950|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##BC017804|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##AK312225|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##DQ891965|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##EU176663|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##BC020444|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##L04288|NKTR|4820|natural killer-tumor recognition sequence##AK097208|NKTR|4820|natural killer-tumor recognition sequence##BX538094|NKTR|4820|natural killer-tumor recognition sequence##NM_005385|NKTR|4820|natural killer-tumor recognition sequence##AK292017|NKTR|4820|natural killer-tumor recognition sequence##BC144518|NKTR|4820|natural killer-tumor recognition sequence##BX957218|NKTR|4820|natural killer-tumor recognition sequence##CR749571|NKTR|4820|natural killer-tumor recognition sequence##AB209888|NKTR|4820|natural killer-tumor recognition sequence##BC072680|NKTR|4820|natural killer-tumor recognition sequence##BC051318|NKTR|4820|natural killer-tumor recognition sequence##BC035644|NKTR|4820|natural killer-tumor recognition sequence##BC020672|NKTR|4820|natural killer-tumor recognition sequence	0.987686	0.0	denovo_WM_7:-35:0.340	denovo_WM_7:-36:0.357	denovo_WM_7:-37:0.267
chr8	77912314	77912448	reg1000377.p2	14.261	+	AK131399 TSC_hg19_v1_chr8_+_77765961	-146492	+	AB083343 TSC_hg19_v1_chr8_+_77593533	-318853	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	-318871	+	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	28	-	NM_001172086 NM_001172087	898	-	NM_006823 NM_181839 S76965	1515954	+	AK131399|ZFHX4|79776|zinc finger homeobox 4##AB083343|ZFHX4|79776|zinc finger homeobox 4##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha	0.990002	0.0	denovo_WM_7:-1:0.953
chr8	56941491	56941617	reg1000425.p1	14.243	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-149034	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-149159	+	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	-149189	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	45532	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	84986	-	TSC_hg19_v1_chr8_-_57123833 U65002	182281	-	AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1	1.95284	0.853195	denovo_WM_7:-24:0.845	CTCF.p2:30:0.853	denovo_WM_7:-39:0.853
chr8	27930439	27930580	reg1000487.p1	14.239	+	NM_173833	-80141	-	TSC_hg19_v1_chr8_-_27695574 AK301836	-234950	-	TSC_hg19_v1_chr8_-_27695325 AF189722 AB027250 AK027291 AF237709 BC015191 AB027249 NM_018492	-235162	-	AB075870 NM_001010906	10878	-	NM_018091 TSC_hg19_v1_chr8_+_27950679 AK302140 AK296475 AK022626 AK295574 AK001284 AK293424 AK315985 AK316053 AK298265 BC001240 AL834273 AB463602 AM392633	20148	+	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	244216	+	NM_173833|SCARA5|286133|scavenger receptor class A, member 5 (putative)##AK301836|PBK|55872|PDZ binding kinase##AF189722|PBK|55872|PDZ binding kinase##AB027250|PBK|55872|PDZ binding kinase##AK027291|PBK|55872|PDZ binding kinase##AF237709|PBK|55872|PDZ binding kinase##BC015191|PBK|55872|PDZ binding kinase##AB027249|PBK|55872|PDZ binding kinase##NM_018492|PBK|55872|PDZ binding kinase##AB075870|C8orf80|389643|chromosome 8 open reading frame 80##NM_001010906|C8orf80|389643|chromosome 8 open reading frame 80##NM_018091|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK302140|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK296475|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK022626|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK295574|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK001284|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK293424|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK315985|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK316053|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK298265|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##BC001240|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AL834273|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AM392633|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin	0.998572	0.262055	denovo_WM_7:21:0.494	denovo_WM_7:22:0.494	CTCF.p2:-56:0.262
chr11	9532535	9532686	reg1000371.p1	14.238	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	-50067	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-50482	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-126390	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	62603	+	X62048 TSC_hg19_v1_chr11_+_9595313	62715	+	BC051831 TSC_hg19_v1_chr11_+_9595437	62823	+	NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)	1.110678	0.0	denovo_WM_7:57:0.201
chr5	85600947	85601071	reg1000392.p1	14.228	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-1920345	-	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	-1920763	-	AK313713 NM_001884 X17405 X78076 X78075	-2584075	-	TSC_hg19_v1_chr5_+_85913757 AK026505	312749	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	312808	+	TSC_hg19_v1_chr5_+_86563706 CR749722	962676	+	BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.980217	0.043683	denovo_WM_7:18:0.778
chr10	81227262	81227384	reg1000426.p1	14.223	+	TSC_hg19_v1_chr10_-_81205381 AK308876 AK075279 BC053564 BC039249 BC028617 NM_153367	-22063	-	TSC_hg19_v1_chr10_+_81107279 AB529152 CU678858 EU831447	-120036	+	BC013204 BC110299 TSC_hg19_v1_chr10_+_81107252	-120074	+	BC070048 NM_001099692	45033	+	BC111571 K03475 BC157866 BC157890 BC171875 S69685 S69686 AK225599 AK298041 AK298074 AK298114 AK313179 AK316192 HQ021421 HQ021422 HQ021423 HQ021424 HQ021425 HQ021426 HQ021427 HQ021428 HQ021429 HQ021430 HQ021431 HQ021432 NM_001098668 S69680 S69681 S69683 S69791	92828	-	AK290703 AK298002 AK298029 AK298034 NM_001093770 NM_001164644 NM_001164645 NM_001164646 NM_001164647 NM_005411 S69686 AK316196 HQ021433 HQ021434 HQ021435 HQ021436 HQ021437 HQ021438 HQ021439 HQ021440 HQ021441 HQ021442 S69680 S69681 AK298092 AK309518 S69685 S69687 S69688 S69690 BC026229 M13686 BC111570	143381	+	AK308876|ZCCHC24|219654|zinc finger, CCHC domain containing 24##AK075279|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC053564|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC039249|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC028617|ZCCHC24|219654|zinc finger, CCHC domain containing 24##NM_153367|ZCCHC24|219654|zinc finger, CCHC domain containing 24##EU831447|PPIF|10105|peptidylprolyl isomerase F##BC013204|PPIF|10105|peptidylprolyl isomerase F##BC110299|PPIF|10105|peptidylprolyl isomerase F##BC070048|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##NM_001099692|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##BC111571|SFTPA2|729238|surfactant protein A2##K03475|SFTPA2|729238|surfactant protein A2##BC157866|SFTPA2|729238|surfactant protein A2##BC157890|SFTPA2|729238|surfactant protein A2##BC171875|SFTPA1|653509|surfactant protein A1##AK225599|SFTPA2|729238|surfactant protein A2##AK298041|SFTPA2|729238|surfactant protein A2##AK298074|SFTPA2|729238|surfactant protein A2##AK298114|SFTPA2|729238|surfactant protein A2##AK313179|SFTPA2|729238|surfactant protein A2##AK316192|SFTPA2|729238|surfactant protein A2##HQ021421|SFTPA2|729238|surfactant protein A2##HQ021422|SFTPA2|729238|surfactant protein A2##HQ021423|SFTPA2|729238|surfactant protein A2##HQ021424|SFTPA2|729238|surfactant protein A2##HQ021425|SFTPA2|729238|surfactant protein A2##HQ021426|SFTPA2|729238|surfactant protein A2##HQ021427|SFTPA2|729238|surfactant protein A2##HQ021428|SFTPA2|729238|surfactant protein A2##HQ021429|SFTPA2|729238|surfactant protein A2##HQ021430|SFTPA2|729238|surfactant protein A2##HQ021431|SFTPA2|729238|surfactant protein A2##HQ021432|SFTPA2|729238|surfactant protein A2##NM_001098668|SFTPA2|729238|surfactant protein A2##AK290703|SFTPA1|653509|surfactant protein A1##AK298002|SFTPA1|653509|surfactant protein A1##AK298029|SFTPA1|653509|surfactant protein A1##AK298034|SFTPA1|653509|surfactant protein A1##NM_001093770|SFTPA1|653509|surfactant protein A1##NM_001164644|SFTPA1|653509|surfactant protein A1##NM_001164645|SFTPA1|653509|surfactant protein A1##NM_001164646|SFTPA1|653509|surfactant protein A1##NM_001164647|SFTPA1|653509|surfactant protein A1##NM_005411|SFTPA1|653509|surfactant protein A1##AK316196|SFTPA1|653509|surfactant protein A1##HQ021433|SFTPA1|653509|surfactant protein A1##HQ021434|SFTPA1|653509|surfactant protein A1##HQ021435|SFTPA1|653509|surfactant protein A1##HQ021436|SFTPA1|653509|surfactant protein A1##HQ021437|SFTPA1|653509|surfactant protein A1##HQ021438|SFTPA1|653509|surfactant protein A1##HQ021439|SFTPA1|653509|surfactant protein A1##HQ021440|SFTPA1|653509|surfactant protein A1##HQ021441|SFTPA1|653509|surfactant protein A1##HQ021442|SFTPA1|653509|surfactant protein A1##AK298092|SFTPA1|653509|surfactant protein A1##AK309518|SFTPA1|653509|surfactant protein A1##BC026229|SFTPA1|653509|surfactant protein A1##BC111570|SFTPA1|653509|surfactant protein A1	0.998167	0.0	
chr11	65278365	65278492	reg1000408.p1	14.220	+	TSC_hg19_v1_chr11_+_65271764 AF001540	-6918	+	TSC_hg19_v1_chr11_+_65268717 BC063689 AK130345	-9911	+	TSC_hg19_v1_chr11_+_65267017 AF001541	-11336	+	TSC_hg19_v1_chr11_+_65292533 NM_001048218 NM_020680	14109	+	TSC_hg19_v1_chr11_+_65292576 AF297709 BC069233 AK314945 AK302198 AB047077 AB051427 AB051428	14172	+	TSC_hg19_v1_chr11_-_65314049 AK090750	35681	-	BC063689|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##AK130345|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##NM_001048218|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##NM_020680|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AF297709|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##BC069233|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AK314945|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AK302198|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AB047077|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AB051427|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AB051428|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AK090750|LTBP3|4054|latent transforming growth factor beta binding protein 3	0.996942	0.964898	CTCF.p2:-11:0.965	denovo_WM_7:62:0.841
chr5	179517574	179517691	reg1000561.p1	14.217	+	TSC_hg19_v1_chr5_-_179499095 BC113864 BC114472 AB209800 AY083998 NM_018434 BC108306	-18567	-	AK313089 BC017100 TSC_hg19_v1_chr5_-_179498743 BC082267	-18941	-	TSC_hg19_v1_chr5_-_179334854 AB014576 BC129994 NM_015043 NM_198868	-182780	-	TSC_hg19_v1_chr5_-_179636160 NM_175062 BC036802	118544	-	TSC_hg19_v1_chr5_-_179718968 AK289638	201335	-	TSC_hg19_v1_chr5_-_179719061 NM_001135044 NM_002752 NM_139068 NM_139069 NM_139070	201444	-	BC113864|RNF130|55819|ring finger protein 130##BC114472|RNF130|55819|ring finger protein 130##AB209800|RNF130|55819|ring finger protein 130##AY083998|RNF130|55819|ring finger protein 130##NM_018434|RNF130|55819|ring finger protein 130##BC108306|RNF130|55819|ring finger protein 130##AK313089|RNF130|55819|ring finger protein 130##BC017100|RNF130|55819|ring finger protein 130##BC082267|RNF130|55819|ring finger protein 130##AB014576|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##BC129994|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##NM_015043|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##NM_198868|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##NM_175062|RASGEF1C|255426|RasGEF domain family, member 1C##BC036802|RASGEF1C|255426|RasGEF domain family, member 1C##AK289638|MAPK9|5601|mitogen-activated protein kinase 9##NM_001135044|MAPK9|5601|mitogen-activated protein kinase 9##NM_002752|MAPK9|5601|mitogen-activated protein kinase 9##NM_139068|MAPK9|5601|mitogen-activated protein kinase 9##NM_139069|MAPK9|5601|mitogen-activated protein kinase 9##NM_139070|MAPK9|5601|mitogen-activated protein kinase 9	0.995649	0.854595	CTCF.p2:0:0.855	denovo_WM_7:44:0.815
chr8	144544088	144544222	reg1000446.p1	14.215	+	NM_201589	-31554	-	TSC_hg19_v1_chr8_+_144451016 NM_052924 BC012135 BC025767 AB528055 AY082588 CU693058 AB067516	-93065	+	AF349017 NM_052963 TSC_hg19_v1_chr8_-_144417051	-127100	-	D63484 TSC_hg19_v1_chr8_-_144623602 BC038670	79436	-	TSC_hg19_v1_chr8_-_144623640 NM_015117	79477	-	AK291817 NM_001166237	91401	+	NM_201589|MAFA|389692|v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)##NM_052924|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##BC012135|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##BC025767|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AY082588|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AB067516|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AF349017|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##NM_052963|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##D63484|ZC3H3|23144|zinc finger CCCH-type containing 3##BC038670|ZC3H3|23144|zinc finger CCCH-type containing 3##NM_015117|ZC3H3|23144|zinc finger CCCH-type containing 3##AK291817|GSDMD|79792|gasdermin D##NM_001166237|GSDMD|79792|gasdermin D	0.99938	0.0	denovo_WM_7:-1:0.739
chr1	151467388	151467528	reg1000549.p1	14.192	+	TSC_hg19_v1_chr1_-_151431954 AJ242979 BX537838 NM_001194937 NM_001194938 NM_015100 NM_145796	-35527	-	TSC_hg19_v1_chr1_-_151431656 BX649163 AB037911 AB075477 AK000199 AK300307 BC057773 BX537561 AK299791 AK302501	-35782	-	TSC_hg19_v1_chr1_-_151414644 AB007930 AB463182 NM_207171 CU691222	-52797	-	NM_020770 AF263462 TSC_hg19_v1_chr1_+_151483892 AB037740 AK290007 BC152445 BC146657	16438	+	TSC_hg19_v1_chr1_+_151512784 AF254260 NM_001126337 NM_020127 AK075001 AK299263 AK223161 AK298066 AK299925 AK315414 AL136917 AY358610 BC008301 BC002933 AB528295 AM393256 CU678909 DQ893190 DQ893683 DQ896805	45343	+	TSC_hg19_v1_chr1_+_151584550 BC012184 BC101822 BC101824 BC100998 BC101000 NM_030918	117130	+	AJ242979|POGZ|23126|pogo transposable element with ZNF domain##BX537838|POGZ|23126|pogo transposable element with ZNF domain##NM_001194937|POGZ|23126|pogo transposable element with ZNF domain##NM_001194938|POGZ|23126|pogo transposable element with ZNF domain##NM_015100|POGZ|23126|pogo transposable element with ZNF domain##NM_145796|POGZ|23126|pogo transposable element with ZNF domain##BX649163|POGZ|23126|pogo transposable element with ZNF domain##AB037911|POGZ|23126|pogo transposable element with ZNF domain##AB075477|POGZ|23126|pogo transposable element with ZNF domain##AK000199|POGZ|23126|pogo transposable element with ZNF domain##AK300307|POGZ|23126|pogo transposable element with ZNF domain##BC057773|POGZ|23126|pogo transposable element with ZNF domain##BX537561|POGZ|23126|pogo transposable element with ZNF domain##AK299791|POGZ|23126|pogo transposable element with ZNF domain##AK302501|POGZ|23126|pogo transposable element with ZNF domain##AB007930|POGZ|23126|pogo transposable element with ZNF domain##NM_207171|POGZ|23126|pogo transposable element with ZNF domain##NM_020770|CGN|57530|cingulin##AF263462|CGN|57530|cingulin##AB037740|CGN|57530|cingulin##AK290007|CGN|57530|cingulin##BC152445|CGN|57530|cingulin##BC146657|CGN|57530|cingulin##AF254260|TUFT1|7286|tuftelin 1##NM_001126337|TUFT1|7286|tuftelin 1##NM_020127|TUFT1|7286|tuftelin 1##AK075001|TUFT1|7286|tuftelin 1##AK299263|TUFT1|7286|tuftelin 1##AK223161|TUFT1|7286|tuftelin 1##AK298066|TUFT1|7286|tuftelin 1##AK299925|TUFT1|7286|tuftelin 1##AK315414|TUFT1|7286|tuftelin 1##AL136917|TUFT1|7286|tuftelin 1##AY358610|TUFT1|7286|tuftelin 1##BC008301|TUFT1|7286|tuftelin 1##BC002933|TUFT1|7286|tuftelin 1##AM393256|TUFT1|7286|tuftelin 1##DQ893190|TUFT1|7286|tuftelin 1##DQ893683|TUFT1|7286|tuftelin 1##DQ896805|TUFT1|7286|tuftelin 1##BC012184|SNX27|81609|sorting nexin family member 27##BC101822|SNX27|81609|sorting nexin family member 27##BC101824|SNX27|81609|sorting nexin family member 27##BC100998|SNX27|81609|sorting nexin family member 27##BC101000|SNX27|81609|sorting nexin family member 27##NM_030918|SNX27|81609|sorting nexin family member 27	0.990337	0.0	denovo_WM_7:-3:0.930
chr15	51199382	51199562	reg1000316.p1	14.188	+	TSC_hg19_v1_chr15_-_51057895 AK075454 AY169314 NM_032802	-141569	-	TSC_hg19_v1_chr15_-_51057864 BC025740 AK315651 AJ345028	-141613	-	TSC_hg19_v1_chr15_-_50978995 AY032950 NM_017672	-220475	-	TSC_hg19_v1_chr15_-_51200797 AK091906	1289	-	TSC_hg19_v1_chr15_+_51200903 AK297290 NM_001252127 NM_007347 BC126308 BC130466 BC144025 BC144030 AF155156 AB030653 HQ258532 CR749604	1455	+	BC127701 BC127702 TSC_hg19_v1_chr15_-_51386865 AK123281	187378	-	AK075454|SPPL2A|84888|signal peptide peptidase-like 2A##AY169314|SPPL2A|84888|signal peptide peptidase-like 2A##NM_032802|SPPL2A|84888|signal peptide peptidase-like 2A##BC025740|SPPL2A|84888|signal peptide peptidase-like 2A##AK315651|SPPL2A|84888|signal peptide peptidase-like 2A##AJ345028|SPPL2A|84888|signal peptide peptidase-like 2A##AY032950|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##NM_017672|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK297290|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_001252127|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_007347|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC126308|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC130466|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144025|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144030|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AF155156|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AB030653|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##HQ258532|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##CR749604|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC127701|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##BC127702|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##AK123281|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3	0.996626	0.0	
chr19	40257471	40257567	reg1000412.p2	14.187	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-28880	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-62476	+	FJ613352 NM_001190441	-110974	+	NM_001143832	9714	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	67279	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	73772	-	FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613352|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001190441|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001143832|LEUTX|342900|leucine twenty homeobox##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin	1.991378	0.95359	CTCF.p2:8:0.954	denovo_WM_7:45:0.491	denovo_WM_7:46:0.328	denovo_WM_7:61:0.331	denovo_WM_7:62:0.495
chr15	66764597	66764756	reg1000417.p2	14.181	+	TSC_hg19_v1_chr15_+_66694219 AK294322	-70459	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	-85403	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	-85514	+	AF093593 AB464224 AK292051 TSC_hg19_v1_chr15_-_66790104 BC014315 AK024763 AK312018 NM_006049	25430	-	L20868 BC005817 BC009888 BC014653 BC010151 BC007996 BC040610 AB208977 BC001365 BC018840 BC095427 TSC_hg19_v1_chr15_-_66797186 AK297490 AK291117 AK297484 AK130784 AK223057 AK291859 AK294113 AK298224 BC066925 D23660 NM_000968	32496	-	AK023175 NM_017975 BX640701	32766	+	AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AF093593|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK292051|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##BC014315|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK024763|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK312018|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##NM_006049|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##L20868|RPL4|6124|ribosomal protein L4##BC005817|RPL4|6124|ribosomal protein L4##BC009888|RPL4|6124|ribosomal protein L4##BC014653|RPL4|6124|ribosomal protein L4##BC010151|RPL4|6124|ribosomal protein L4##BC007996|RPL4|6124|ribosomal protein L4##BC040610|RPL4|6124|ribosomal protein L4##AB208977|RPL4|6124|ribosomal protein L4##BC001365|RPL4|6124|ribosomal protein L4##BC018840|RPL4|6124|ribosomal protein L4##BC095427|RPL4|6124|ribosomal protein L4##AK291117|RPL4|6124|ribosomal protein L4##AK297484|RPL4|6124|ribosomal protein L4##AK130784|RPL4|6124|ribosomal protein L4##AK223057|RPL4|6124|ribosomal protein L4##AK291859|RPL4|6124|ribosomal protein L4##AK294113|RPL4|6124|ribosomal protein L4##BC066925|RPL4|6124|ribosomal protein L4##D23660|RPL4|6124|ribosomal protein L4##NM_000968|RPL4|6124|ribosomal protein L4##AK023175|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##NM_017975|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##BX640701|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)	0.996841	0.165427	denovo_WM_7:-27:0.975
chr6	79960086	79960213	reg1000387.p1	14.178	+	TSC_hg19_v1_chr6_-_79944400 AK315391 AY043282 NM_001201362 NM_001201363 NM_004242 NM_138730	-15724	-	L40357 TSC_hg19_v1_chr6_-_79944391 AF401520 AF274949 BC009529	-15791	-	TSC_hg19_v1_chr6_-_79787972 AK057039 NM_017934	-172092	-	TSC_hg19_v1_chr6_-_80247114 AK299314 BX648161 BC050327 NM_001122769 NM_181714	286980	-	TSC_hg19_v1_chr6_+_80341019 AF340151 NM_031469 BC109043 BC109044 AK311757 BC040489 AK074506 BC052987 BC060799 BC070059 AJ297972	380925	+	NM_001243308	619987	-	AK315391|HMGN3|9324|high mobility group nucleosomal binding domain 3##AY043282|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201362|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201363|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_004242|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_138730|HMGN3|9324|high mobility group nucleosomal binding domain 3##L40357|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF401520|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF274949|HMGN3|9324|high mobility group nucleosomal binding domain 3##BC009529|HMGN3|9324|high mobility group nucleosomal binding domain 3##AK057039|PHIP|55023|pleckstrin homology domain interacting protein##NM_017934|PHIP|55023|pleckstrin homology domain interacting protein##AK299314|LCA5|167691|Leber congenital amaurosis 5##BX648161|LCA5|167691|Leber congenital amaurosis 5##BC050327|LCA5|167691|Leber congenital amaurosis 5##NM_001122769|LCA5|167691|Leber congenital amaurosis 5##NM_181714|LCA5|167691|Leber congenital amaurosis 5##AF340151|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_031469|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109043|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109044|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK311757|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC040489|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK074506|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC052987|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC060799|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC070059|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AJ297972|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_001243308|C6orf7|89758|chromosome 6 open reading frame 7	0.998232	0.093294	
chr9	140022064	140022209	reg1000459.p1	14.172	+	NM_013379 TSC_hg19_v1_chr9_-_140009194	-12942	-	AK292112 TSC_hg19_v1_chr9_-_140009178	-12961	-	BC011907 BC016961 DQ891460 DQ894637 TSC_hg19_v1_chr9_-_140009169	-12967	-	TSC_hg19_v1_chr9_-_140024189 BC018639	2099	-	TSC_hg19_v1_chr9_+_140032795 L13266	10671	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	11642	+	NM_013379|DPP7|29952|dipeptidyl-peptidase 7##AK292112|DPP7|29952|dipeptidyl-peptidase 7##BC011907|DPP7|29952|dipeptidyl-peptidase 7##BC016961|DPP7|29952|dipeptidyl-peptidase 7##DQ891460|DPP7|29952|dipeptidyl-peptidase 7##DQ894637|DPP7|29952|dipeptidyl-peptidase 7##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1	0.997709	0.0	denovo_WM_7:-4:0.238	denovo_WM_7:-5:0.238	denovo_WM_7:-6:0.238	denovo_WM_7:-7:0.238
chr6	26195666	26195807	reg1000398.p1	14.166	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	-6414	-	BC101748 BC101750 EU446967 NM_003523	-11746	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-37372	+	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	1760	-	BC031333 NM_003530 BC128035 CR541970 CR541999 EU446963 NM_021065 BC093807 BC093809 AK312127 AK316611	3743	-	TSC_hg19_v1_chr6_+_26199747 BC056264 BC096120 BC096123 NM_003522	4013	+	BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d##BC031333|HIST1H3D|8351|histone cluster 1, H3d##NM_003530|HIST1H3D|8351|histone cluster 1, H3d##BC128035|HIST1H2AD|3013|histone cluster 1, H2ad##CR541970|HIST1H2AD|3013|histone cluster 1, H2ad##CR541999|HIST1H2AD|3013|histone cluster 1, H2ad##EU446963|HIST1H2AD|3013|histone cluster 1, H2ad##NM_021065|HIST1H2AD|3013|histone cluster 1, H2ad##BC093807|HIST1H2AD|3013|histone cluster 1, H2ad##BC093809|HIST1H2AD|3013|histone cluster 1, H2ad##AK312127|HIST1H2AD|3013|histone cluster 1, H2ad##AK316611|HIST1H3D|8351|histone cluster 1, H3d##BC056264|HIST1H2BF|8343|histone cluster 1, H2bf##BC096120|HIST1H2BF|8343|histone cluster 1, H2bf##BC096123|HIST1H2BF|8343|histone cluster 1, H2bf##NM_003522|HIST1H2BF|8343|histone cluster 1, H2bf	0.999446	0.0	denovo_WM_7:23:0.964
chr6	41516493	41516634	reg1000433.p1	14.151	+	TSC_hg19_v1_chr6_+_41514342 BC052803	-2226	+	TSC_hg19_v1_chr6_+_41514135 BC040962 NM_001012426 NM_001012427 NM_138457	-2404	+	NM_001199509 NM_001199510 NM_004828 AJ010099 AJ010100 BC166647	-212997	+	TSC_hg19_v1_chr6_+_41606198 NM_005586 AK290735 BC007836 U78313	89659	+	AJ608793 AJ608794 AJ608792 TSC_hg19_v1_chr6_-_41673723	157138	-	TSC_hg19_v1_chr6_-_41702787 AJ608787 BC032448 NM_007162	186202	-	BC052803|FOXP4|116113|forkhead box P4##BC040962|FOXP4|116113|forkhead box P4##NM_001012426|FOXP4|116113|forkhead box P4##NM_001012427|FOXP4|116113|forkhead box P4##NM_138457|FOXP4|116113|forkhead box P4##NM_001199509|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_001199510|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_004828|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010099|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010100|NCR2|9436|natural cytotoxicity triggering receptor 2##BC166647|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_005586|MDFI|4188|MyoD family inhibitor##AK290735|MDFI|4188|MyoD family inhibitor##BC007836|MDFI|4188|MyoD family inhibitor##U78313|MDFI|4188|MyoD family inhibitor##AJ608793|TFEB|7942|transcription factor EB##AJ608794|TFEB|7942|transcription factor EB##AJ608792|TFEB|7942|transcription factor EB##AJ608787|TFEB|7942|transcription factor EB##BC032448|TFEB|7942|transcription factor EB##NM_007162|TFEB|7942|transcription factor EB	0.988737	0.0	
chrX	133503791	133503931	reg1000420.p2	14.145	+	NM_001101357	-132785	+	TSC_hg19_v1_chrX_-_133119645 L47125 AK300168 NM_001164617 NM_001164618 NM_001164619 NM_004484	-384210	-	AB527294 CU690242 DQ349136 DQ349137 DQ349138 DQ893658 DQ895822 TSC_hg19_v1_chrX_-_133119622 Z37987 L47176 AK222761 AK222766 AK310689 BC035972 U50410	-384312	-	TSC_hg19_v1_chrX_+_133507317 AY157622 NM_001015877 NM_032335 NM_032458 AL832725 AK290095 AK303369 BC005994 AB058726	3516	+	TSC_hg19_v1_chrX_+_133594194 NM_000194 AK313435	90336	+	TSC_hg19_v1_chrX_+_133594225 M31642	90395	+	NM_001101357|CCDC160|347475|coiled-coil domain containing 160##L47125|GPC3|2719|glypican 3##AK300168|GPC3|2719|glypican 3##NM_001164617|GPC3|2719|glypican 3##NM_001164618|GPC3|2719|glypican 3##NM_001164619|GPC3|2719|glypican 3##NM_004484|GPC3|2719|glypican 3##DQ349136|GPC3|2719|glypican 3##DQ349137|GPC3|2719|glypican 3##DQ349138|GPC3|2719|glypican 3##DQ893658|GPC3|2719|glypican 3##DQ895822|GPC3|2719|glypican 3##Z37987|GPC3|2719|glypican 3##L47176|GPC3|2719|glypican 3##AK222761|GPC3|2719|glypican 3##AK222766|GPC3|2719|glypican 3##AK310689|GPC3|2719|glypican 3##BC035972|GPC3|2719|glypican 3##U50410|GPC3|2719|glypican 3##AY157622|PHF6|84295|PHD finger protein 6##NM_001015877|PHF6|84295|PHD finger protein 6##NM_032335|PHF6|84295|PHD finger protein 6##NM_032458|PHF6|84295|PHD finger protein 6##AL832725|PHF6|84295|PHD finger protein 6##AK290095|PHF6|84295|PHD finger protein 6##AK303369|PHF6|84295|PHD finger protein 6##BC005994|PHF6|84295|PHD finger protein 6##AB058726|PHF6|84295|PHD finger protein 6##NM_000194|HPRT1|3251|hypoxanthine phosphoribosyltransferase 1##AK313435|HPRT1|3251|hypoxanthine phosphoribosyltransferase 1##M31642|HPRT1|3251|hypoxanthine phosphoribosyltransferase 1	0.998466	0.0	denovo_WM_7:26:0.229	denovo_WM_7:27:0.229	denovo_WM_7:28:0.229	denovo_WM_7:29:0.229
chr19	14779089	14779237	reg1000522.p2	14.144	+	AK127809 NM_001204118 NM_207390 BC140848 BC144664 BC144665	-85249	+	CR450354 DQ891899 DQ895085 AF217091 TSC_hg19_v1_chr19_-_14682879 M33374 AF112200 BC002595 NM_004146	-96314	-	TSC_hg19_v1_chr19_+_14640435 AK001416 AK315412 BC007801 BC013881 BC005952 AF038958 BC002425 BC034484 AF222742 AX771269 AF038959 AB529027 DQ891949 DQ895135 EU832830 GQ129437	-138704	+	AY358817 AK290909 BC121130 BC121131 BC128053 BC148282 AK298653 AF239764 BC142639 AL832663 NM_032571	6514	-	AK291471 AK094028 AX748419 TSC_hg19_v1_chr19_+_14800878 AK307147 BC064571 NM_032433 BC048107 BX647475 AF372702 AK309208	21601	+	BC082991 AF114491 AK301458 AK222891 AK298700 TSC_hg19_v1_chr19_-_14887654	108475	-	NM_001204118|CLEC17A|388512|C-type lectin domain family 17, member A##NM_207390|CLEC17A|388512|C-type lectin domain family 17, member A##BC140848|CLEC17A|388512|C-type lectin domain family 17, member A##BC144664|CLEC17A|388512|C-type lectin domain family 17, member A##BC144665|CLEC17A|388512|C-type lectin domain family 17, member A##CR450354|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ891899|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ895085|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF217091|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##M33374|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF112200|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##BC002595|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##NM_004146|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AK001416|TECR|9524|trans-2,3-enoyl-CoA reductase##AK315412|TECR|9524|trans-2,3-enoyl-CoA reductase##BC007801|TECR|9524|trans-2,3-enoyl-CoA reductase##BC013881|TECR|9524|trans-2,3-enoyl-CoA reductase##BC005952|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038958|TECR|9524|trans-2,3-enoyl-CoA reductase##BC002425|TECR|9524|trans-2,3-enoyl-CoA reductase##BC034484|TECR|9524|trans-2,3-enoyl-CoA reductase##AF222742|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038959|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ891949|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ895135|TECR|9524|trans-2,3-enoyl-CoA reductase##EU832830|TECR|9524|trans-2,3-enoyl-CoA reductase##GQ129437|TECR|9524|trans-2,3-enoyl-CoA reductase##AY358817|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK290909|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121130|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121131|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC128053|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC148282|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK298653|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AF239764|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC142639|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AL832663|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##NM_032571|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK291471|ZNF333|84449|zinc finger protein 333##AK094028|ZNF333|84449|zinc finger protein 333##AK307147|ZNF333|84449|zinc finger protein 333##BC064571|ZNF333|84449|zinc finger protein 333##NM_032433|ZNF333|84449|zinc finger protein 333##BC048107|ZNF333|84449|zinc finger protein 333##BX647475|ZNF333|84449|zinc finger protein 333##AF372702|ZNF333|84449|zinc finger protein 333##AK309208|ZNF333|84449|zinc finger protein 333##BC082991|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AF114491|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK301458|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK222891|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK298700|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2	1.542205	0.0	denovo_WM_7:11:0.359	denovo_WM_7:13:0.615	denovo_WM_7:-92:0.331
chr15	45016622	45016730	reg1000427.p1	14.138	+	TSC_hg19_v1_chr15_+_45003710 NM_004048 AK303560 AK315776 S82297 S82300 S54761 BC032589 BC064910 X07621 AY007153 AB021288 AB463439 AY187687 CR457066 DQ839493 DQ839494 DQ884406 DQ890551 DQ893711 V00567	-12955	+	AK130783 TSC_hg19_v1_chr15_-_45003540	-13130	-	BC036924 NM_001145112	-47591	-	AK311550 TSC_hg19_v1_chr15_+_45021275 DQ232883	4577	+	BC031266 TSC_hg19_v1_chr15_+_45021331	4655	+	NM_080745 NM_182985	11883	+	NM_004048|B2M|567|beta-2-microglobulin##AK303560|B2M|567|beta-2-microglobulin##AK315776|B2M|567|beta-2-microglobulin##S82297|B2M|567|beta-2-microglobulin##S82300|B2M|567|beta-2-microglobulin##S54761|B2M|567|beta-2-microglobulin##BC032589|B2M|567|beta-2-microglobulin##BC064910|B2M|567|beta-2-microglobulin##X07621|B2M|567|beta-2-microglobulin##AY007153|B2M|567|beta-2-microglobulin##AB021288|B2M|567|beta-2-microglobulin##AY187687|B2M|567|beta-2-microglobulin##CR457066|B2M|567|beta-2-microglobulin##DQ839493|B2M|567|beta-2-microglobulin##DQ839494|B2M|567|beta-2-microglobulin##DQ884406|B2M|567|beta-2-microglobulin##DQ890551|B2M|567|beta-2-microglobulin##DQ893711|B2M|567|beta-2-microglobulin##V00567|B2M|567|beta-2-microglobulin##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##DQ232883|TRIM69|140691|tripartite motif containing 69##BC031266|TRIM69|140691|tripartite motif containing 69##NM_080745|TRIM69|140691|tripartite motif containing 69##NM_182985|TRIM69|140691|tripartite motif containing 69	0.97157	0.0	
chr13	99959662	99959814	reg1000440.p1	14.136	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-40	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-49124	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-106619	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	193962	+	TSC_hg19_v1_chr13_+_100153777 BC130293	194044	+	BC041830 TSC_hg19_v1_chr13_+_100229390	269639	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	1.014599	0.0	denovo_WM_7:60:0.675
chr1	155828355	155828516	reg1000490.p2	14.133	+	TSC_hg19_v1_chr1_-_155827021 AB195687 AB195688	-1383	-	TSC_hg19_v1_chr1_-_155827003 AB232668 AY335492 BC114629 BC115703 BX537764 NM_001037533 NM_032292 AY335490 BX648043 AK098734 BX648802	-1459	-	TSC_hg19_v1_chr1_-_155774769 AK315191 BC071650	-53644	-	NM_152280 TSC_hg19_v1_chr1_+_155829357 BC039205 BC013690 D38522 AK296378 CR749792 AK027540 AK074931 BC004291 CU691678	970	+	TSC_hg19_v1_chr1_+_155853548 AK026178	25138	+	BC104186 BC104187 AF084462 U71203 U78165 Y07566 TSC_hg19_v1_chr1_-_155881141	52669	-	AB195687|GON4L|54856|gon-4-like (C. elegans)##AB195688|GON4L|54856|gon-4-like (C. elegans)##AB232668|GON4L|54856|gon-4-like (C. elegans)##AY335492|GON4L|54856|gon-4-like (C. elegans)##BC114629|GON4L|54856|gon-4-like (C. elegans)##BC115703|GON4L|54856|gon-4-like (C. elegans)##BX537764|GON4L|54856|gon-4-like (C. elegans)##NM_001037533|GON4L|54856|gon-4-like (C. elegans)##NM_032292|GON4L|54856|gon-4-like (C. elegans)##AY335490|GON4L|54856|gon-4-like (C. elegans)##BX648043|GON4L|54856|gon-4-like (C. elegans)##AK098734|GON4L|54856|gon-4-like (C. elegans)##BX648802|GON4L|54856|gon-4-like (C. elegans)##AK315191|GON4L|54856|gon-4-like (C. elegans)##BC071650|GON4L|54856|gon-4-like (C. elegans)##NM_152280|SYT11|23208|synaptotagmin XI##BC039205|SYT11|23208|synaptotagmin XI##BC013690|SYT11|23208|synaptotagmin XI##D38522|SYT11|23208|synaptotagmin XI##AK296378|SYT11|23208|synaptotagmin XI##CR749792|SYT11|23208|synaptotagmin XI##AK027540|SYT11|23208|synaptotagmin XI##AK074931|SYT11|23208|synaptotagmin XI##BC004291|SYT11|23208|synaptotagmin XI##AK026178|SYT11|23208|synaptotagmin XI##BC104186|RIT1|6016|Ras-like without CAAX 1##BC104187|RIT1|6016|Ras-like without CAAX 1##AF084462|RIT1|6016|Ras-like without CAAX 1##U71203|RIT1|6016|Ras-like without CAAX 1##U78165|RIT1|6016|Ras-like without CAAX 1##Y07566|RIT1|6016|Ras-like without CAAX 1	1.980798	0.0	denovo_WM_7:0:0.311	denovo_WM_7:1:0.311	denovo_WM_7:2:0.311
chr12	110869297	110869431	reg1000291.p1	14.125	+	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	-27853	-	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	-27925	-	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-149996	+	TSC_hg19_v1_chr12_-_110888079 AF006086	18721	-	BC078162 TSC_hg19_v1_chr12_-_110888104	18737	-	TSC_hg19_v1_chr12_-_110888123 BC067747 AL357196	18754	-	BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##BC078162|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##BC067747|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	0.998384	0.992904	CTCF.p2:-18:0.993	denovo_WM_7:58:0.229	denovo_WM_7:59:0.229	denovo_WM_7:60:0.229	denovo_WM_7:61:0.229
chr7	30387740	30387896	reg1000559.p1	14.120	+	TSC_hg19_v1_chr7_+_30324634 AY054122	-63162	+	TSC_hg19_v1_chr7_+_30324515 AF527533	-63269	+	AF513707 NM_147128	-63896	+	AY128682 AY128683 AY128684 AY128685 AY128686 AF113925 BC040339 AK300367 AK023969 NM_006092	130503	-	CU674304 TSC_hg19_v1_chr7_-_30544445 BC013937 BC005356 AK315608 BC019243 BC000625 NM_001199815 NM_001199816 NM_001199817 NM_024051	156583	-	NM_002047	246362	+	AY054122|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AY128682|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128683|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128684|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128685|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128686|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AF113925|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC040339|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK300367|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK023969|NOD1|10392|nucleotide-binding oligomerization domain containing 1##NM_006092|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC013937|GGCT|79017|gamma-glutamylcyclotransferase##BC005356|GGCT|79017|gamma-glutamylcyclotransferase##AK315608|GGCT|79017|gamma-glutamylcyclotransferase##BC019243|GGCT|79017|gamma-glutamylcyclotransferase##BC000625|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199815|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199816|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199817|GGCT|79017|gamma-glutamylcyclotransferase##NM_024051|GGCT|79017|gamma-glutamylcyclotransferase##NM_002047|GARS|2617|glycyl-tRNA synthetase	0.99432	0.0	
chr15	40509544	40509662	reg1000511.p1	14.116	+	TSC_hg19_v1_chr15_+_40453269 AK296984 AF107297 BC018739 AF046918 AB208782 AF035933 AF068760 AF046079 AB384719 CU676304	-56261	+	NM_001211 AF053306 TSC_hg19_v1_chr15_+_40453249 AK296795 AK312709	-56374	+	TSC_hg19_v1_chr15_-_40401076 BC060783 BC070043 NM_001003940	-108508	-	AK315817 NM_001128628 NM_001128629 AK315813 AK290227	104	+	TSC_hg19_v1_chr15_+_40531273 AK131522	21668	+	NM_020168 AJ236915	22450	+	AK296984|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF107297|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##BC018739|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF046918|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AB208782|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF035933|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF068760|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF046079|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##NM_001211|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF053306|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AK296795|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AK312709|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##BC060783|BMF|90427|Bcl2 modifying factor##BC070043|BMF|90427|Bcl2 modifying factor##NM_001003940|BMF|90427|Bcl2 modifying factor##AK315817|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_001128628|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_001128629|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK315813|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK290227|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK131522|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_020168|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AJ236915|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6	0.0	0.017913	
chr12	125481641	125481821	reg1000518.p2	14.109	+	TSC_hg19_v1_chr12_+_125478249 AF284094	-3471	+	TSC_hg19_v1_chr12_+_125478217 NM_080626 BC034525	-3541	+	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	-8087	-	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	68210	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	68337	+	NM_052907	329430	+	AF284094|BRI3BP|140707|BRI3 binding protein##NM_080626|BRI3BP|140707|BRI3 binding protein##BC034525|BRI3BP|140707|BRI3 binding protein##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##NM_052907|TMEM132B|114795|transmembrane protein 132B	1.914956	0.0	denovo_WM_7:10:0.501	denovo_WM_7:14:0.368
chr21	32879375	32879555	reg1000478.p2	14.103	+	AB096964 NM_001099219	-468671	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-625607	-	AJ457063 AB096962 NM_181606	-677477	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	51893	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	152542	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	194653	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	2.8587	0.0	denovo_WM_7:34:0.742	denovo_WM_7:49:0.745	denovo_WM_7:64:0.769
chr15	33200752	33200901	reg1000569.p1	14.101	+	TSC_hg19_v1_chr15_-_33011125 AK093166 AX747968	-189660	-	AK095741 TSC_hg19_v1_chr15_+_33010204 AK095890 AK095972 AK312265 NM_001191322 NM_001191323 NM_013372 AY232290 AF110137 BC093778 BC101611	-190569	+	NM_001144757 NM_003020 AK314965 BC093053 BC005349 Y00757	-266912	+	NM_001103184 BC101971 BC103692 BC107593 TSC_hg19_v1_chr15_-_33360376 AL833157	159409	-	AB001025 TSC_hg19_v1_chr15_+_33603167 AJ001515 NM_001036 NM_001243996	402343	+	TSC_hg19_v1_chr15_-_34212524 BC037796	1011732	-	AK095741|GREM1|26585|gremlin 1##AK095890|GREM1|26585|gremlin 1##AK095972|GREM1|26585|gremlin 1##AK312265|GREM1|26585|gremlin 1##NM_001191322|GREM1|26585|gremlin 1##NM_001191323|GREM1|26585|gremlin 1##NM_013372|GREM1|26585|gremlin 1##AY232290|GREM1|26585|gremlin 1##AF110137|GREM1|26585|gremlin 1##BC093778|GREM1|26585|gremlin 1##BC101611|GREM1|26585|gremlin 1##NM_001144757|SCG5|6447|secretogranin V (7B2 protein)##NM_003020|SCG5|6447|secretogranin V (7B2 protein)##AK314965|SCG5|6447|secretogranin V (7B2 protein)##BC093053|SCG5|6447|secretogranin V (7B2 protein)##BC005349|SCG5|6447|secretogranin V (7B2 protein)##Y00757|SCG5|6447|secretogranin V (7B2 protein)##NM_001103184|FMN1|342184|formin 1##BC103692|FMN1|342184|formin 1##BC107593|FMN1|342184|formin 1##AL833157|FMN1|342184|formin 1##AB001025|RYR3|6263|ryanodine receptor 3##AJ001515|RYR3|6263|ryanodine receptor 3##NM_001036|RYR3|6263|ryanodine receptor 3##NM_001243996|RYR3|6263|ryanodine receptor 3	0.998498	0.0	
chr11	122754232	122754380	reg1000456.p2	14.099	+	AK097534 BC068507 NM_024806 NM_199124	-875	+	BC070266 AK313578 AF001622 NM_019604	-45077	+	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	-227759	+	AB231738 NM_001098169	98050	-	AB034951 BC016179 BC016660 BC019816 AF352832 TSC_hg19_v1_chr11_-_122932842 AK222628 AK222785 AK096100 AK129885 AK303935	178518	-	TSC_hg19_v1_chr11_-_122932848 NM_006597 NM_153201 AK310467	178573	-	AK097534|C11orf63|79864|chromosome 11 open reading frame 63##BC068507|C11orf63|79864|chromosome 11 open reading frame 63##NM_024806|C11orf63|79864|chromosome 11 open reading frame 63##NM_199124|C11orf63|79864|chromosome 11 open reading frame 63##BC070266|CRTAM|56253|cytotoxic and regulatory T cell molecule##AK313578|CRTAM|56253|cytotoxic and regulatory T cell molecule##AF001622|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_019604|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB231738|BSX|390259|brain-specific homeobox##NM_001098169|BSX|390259|brain-specific homeobox##AB034951|HSPA8|3312|heat shock 70kDa protein 8##BC016179|HSPA8|3312|heat shock 70kDa protein 8##BC016660|HSPA8|3312|heat shock 70kDa protein 8##BC019816|HSPA8|3312|heat shock 70kDa protein 8##AF352832|HSPA8|3312|heat shock 70kDa protein 8##AK222628|HSPA8|3312|heat shock 70kDa protein 8##AK222785|HSPA8|3312|heat shock 70kDa protein 8##AK096100|HSPA8|3312|heat shock 70kDa protein 8##AK129885|HSPA8|3312|heat shock 70kDa protein 8##AK303935|HSPA8|3312|heat shock 70kDa protein 8##NM_006597|HSPA8|3312|heat shock 70kDa protein 8##NM_153201|HSPA8|3312|heat shock 70kDa protein 8##AK310467|HSPA8|3312|heat shock 70kDa protein 8	0.974816	0.0	denovo_WM_7:-5:0.532	denovo_WM_7:-6:0.443
chr2	190935146	190935271	reg1000515.p1	14.098	+	AF019627 AB527883 EU446953 BC074757 AK291524 AF104922 NM_005259	-7821	-	BC036376 TSC_hg19_v1_chr2_+_190649225 BC008410 AK295602 AK308311 BC084548 AY540751 AK297440 BC096330 BC096331 BC096332 AK316215 AK304634	-286008	+	TSC_hg19_v1_chr2_-_190649075 AK074756 NM_001128150 NM_016467	-286110	-	NM_001042521	67277	+	NM_001042520	79763	+	NM_001042519 BC005083 NM_032321 AK313395	110432	+	AF019627|MSTN|2660|myostatin##EU446953|MSTN|2660|myostatin##BC074757|MSTN|2660|myostatin##AK291524|MSTN|2660|myostatin##AF104922|MSTN|2660|myostatin##NM_005259|MSTN|2660|myostatin##BC036376|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC008410|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK295602|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK308311|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC084548|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AY540751|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK297440|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC096330|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC096331|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC096332|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK316215|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK304634|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK074756|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_001128150|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_016467|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_001042521|C2orf88|84281|chromosome 2 open reading frame 88##NM_001042520|C2orf88|84281|chromosome 2 open reading frame 88##NM_001042519|C2orf88|84281|chromosome 2 open reading frame 88##BC005083|C2orf88|84281|chromosome 2 open reading frame 88##NM_032321|C2orf88|84281|chromosome 2 open reading frame 88##AK313395|C2orf88|84281|chromosome 2 open reading frame 88	0.996147	0.359717	CTCF.p2:17:0.360	denovo_WM_7:-29:0.928
chr4	11101747	11101884	reg1000603.p1	14.095	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-415414	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-642805	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-983279	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	328717	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2384136	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2384160	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.0	0.0	
chr19	54997670	54997850	reg1000535.p3	14.093	+	BC065910 TSC_hg19_v1_chr19_-_54984370 BC024327 NM_145057	-13379	-	BC015921 NM_198988	-22867	-	AL833879 TSC_hg19_v1_chr19_+_54965768	-32048	+	NM_002288 NM_021270 BC057790 AF013250 BC069366 CU686777 HQ448404 EF174570	16313	+	AK310088 TSC_hg19_v1_chr19_+_55084486	86725	+	TSC_hg19_v1_chr19_+_55085256 NM_001130917 NM_006866 U82275 AK130170	87492	+	BC065910|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC024327|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##NM_145057|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC015921|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_198988|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_002288|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##NM_021270|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC057790|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AF013250|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC069366|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##HQ448404|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##EF174570|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AK310088|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_001130917|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_006866|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82275|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##AK130170|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2	2.860739	0.0	denovo_WM_7:46:0.286	denovo_WM_7:47:0.433	denovo_WM_7:-68:0.964	denovo_WM_7:-83:0.968
chr9	92219588	92219768	reg1000488.p1	14.092	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-106671	-	BC054500 NM_001142287 NM_006378	-125068	-	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	-286260	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	303	+	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	1185441	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	1344358	+	BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase	1.991753	0.0	denovo_WM_7:4:0.983	denovo_WM_7:-32:0.408	denovo_WM_7:-33:0.408
chr19	11694763	11694943	reg1000537.p1	14.081	+	BC111014 TSC_hg19_v1_chr19_-_11689776 AK307164 NM_001111035 NM_001111036	-5071	-	AK225912 NM_001111034	-5262	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	-6323	-	NM_145295 BC098416 AK095639 BC006279 AK074846 BC069232	13438	+	X51760 BC052597 AK308189 NM_001080493 AK300579 AK303213	154905	-	NM_152355 TSC_hg19_v1_chr19_+_11877884 AK095956	183007	+	BC111014|ACP5|54|acid phosphatase 5, tartrate resistant##AK307164|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111035|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111036|ACP5|54|acid phosphatase 5, tartrate resistant##AK225912|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111034|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant##NM_145295|ZNF627|199692|zinc finger protein 627##BC098416|ZNF627|199692|zinc finger protein 627##AK095639|ZNF627|199692|zinc finger protein 627##BC006279|ZNF627|199692|zinc finger protein 627##AK074846|ZNF627|199692|zinc finger protein 627##BC069232|ZNF627|199692|zinc finger protein 627##X51760|ZNF823|55552|zinc finger protein 823##BC052597|ZNF823|55552|zinc finger protein 823##AK308189|ZNF823|55552|zinc finger protein 823##NM_001080493|ZNF823|55552|zinc finger protein 823##AK300579|ZNF823|55552|zinc finger protein 823##AK303213|ZNF823|55552|zinc finger protein 823##NM_152355|ZNF441|126068|zinc finger protein 441##AK095956|ZNF441|126068|zinc finger protein 441	0.99983	0.0	denovo_WM_7:-17:0.419	denovo_WM_7:-18:0.419
chr4	169931274	169931440	reg1000473.p2	14.079	+	TSC_hg19_v1_chr4_+_169753245 NM_001166110 AB023209	-178180	+	TSC_hg19_v1_chr4_+_169552755 NM_001166109 AK095512	-378561	+	TSC_hg19_v1_chr4_+_169418204 AF464873 NM_001166108 NM_016081 BC140850 BC144666	-513137	+	BC021973 BC033650 TSC_hg19_v1_chr4_-_169931407 AK027337 AK291756 AK299847 AL833393 NM_032783	101	-	BC041023 TSC_hg19_v1_chr4_-_170077830	146462	-	TSC_hg19_v1_chr4_-_170192099 BC053671	260690	-	NM_001166110|PALLD|23022|palladin, cytoskeletal associated protein##AB023209|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166109|PALLD|23022|palladin, cytoskeletal associated protein##AK095512|PALLD|23022|palladin, cytoskeletal associated protein##AF464873|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166108|PALLD|23022|palladin, cytoskeletal associated protein##NM_016081|PALLD|23022|palladin, cytoskeletal associated protein##BC140850|PALLD|23022|palladin, cytoskeletal associated protein##BC144666|PALLD|23022|palladin, cytoskeletal associated protein##BC021973|CBR4|84869|carbonyl reductase 4##BC033650|CBR4|84869|carbonyl reductase 4##AK027337|CBR4|84869|carbonyl reductase 4##AK291756|CBR4|84869|carbonyl reductase 4##AL833393|CBR4|84869|carbonyl reductase 4##NM_032783|CBR4|84869|carbonyl reductase 4##BC041023|SH3RF1|57630|SH3 domain containing ring finger 1##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1	0.950538	0.0	denovo_WM_7:-22:0.621
chr6	141702402	141702528	reg1000630.p1	14.071	+	NM_006079 TSC_hg19_v1_chr6_-_139695784	-2006681	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	-2006704	-	NM_001168389 NM_001168388	-2007042	-	BC095542 GU727635 M73482 NM_002511	707399	-	TSC_hg19_v1_chr6_+_142468399 AF151062 AK301376 BC006989 BC022536	765925	+	TSC_hg19_v1_chr6_+_142468406 AL136684 AK130738 AF060225 AF271994 AK000051 NM_016485	765941	+	NM_006079|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC095542|NMBR|4829|neuromedin B receptor##GU727635|NMBR|4829|neuromedin B receptor##M73482|NMBR|4829|neuromedin B receptor##NM_002511|NMBR|4829|neuromedin B receptor##AF151062|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK301376|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC006989|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC022536|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AL136684|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK130738|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF060225|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF271994|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK000051|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##NM_016485|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)	1.257394	0.0	denovo_WM_7:-49:0.250	denovo_WM_7:-64:0.241
chr14	75229746	75229906	reg1000394.p1	14.064	+	TSC_hg19_v1_chr14_+_75179883 NM_015962 AK290666 BC022361 AK021636 BC080600 BX248271	-49951	+	TSC_hg19_v1_chr14_-_75179784 AB002315 AK304217 AK296912 BX248747 BC032944 NM_001039479	-50050	-	TSC_hg19_v1_chr14_-_75078940 BC078659 Z37976 NM_000428 S82451	-150967	-	TSC_hg19_v1_chr14_+_75230066 AK095760 NM_019589	206	+	TSC_hg19_v1_chr14_+_75283667 BC023570	53874	+	BC105720 BC105721 BC105927 NM_001080408 NM_001243007	100709	-	NM_015962|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK290666|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC022361|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK021636|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC080600|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BX248271|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AB002315|KIAA0317|9870|KIAA0317##AK304217|KIAA0317|9870|KIAA0317##AK296912|KIAA0317|9870|KIAA0317##BX248747|KIAA0317|9870|KIAA0317##BC032944|KIAA0317|9870|KIAA0317##NM_001039479|KIAA0317|9870|KIAA0317##BC078659|LTBP2|4053|latent transforming growth factor beta binding protein 2##Z37976|LTBP2|4053|latent transforming growth factor beta binding protein 2##NM_000428|LTBP2|4053|latent transforming growth factor beta binding protein 2##S82451|LTBP2|4053|latent transforming growth factor beta binding protein 2##AK095760|YLPM1|56252|YLP motif containing 1##NM_019589|YLPM1|56252|YLP motif containing 1##BC023570|YLPM1|56252|YLP motif containing 1##BC105720|PROX2|283571|prospero homeobox 2##BC105721|PROX2|283571|prospero homeobox 2##BC105927|PROX2|283571|prospero homeobox 2##NM_001080408|PROX2|283571|prospero homeobox 2##NM_001243007|PROX2|283571|prospero homeobox 2	1.000786	0.0	denovo_WM_7:-37:0.469	denovo_WM_7:-38:0.390
chr16	48642596	48642733	reg1000389.p1	14.064	+	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-223412	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-242873	-	BC042550 TSC_hg19_v1_chr16_-_48399765	-242904	-	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	1452	-	AB527638 TSC_hg19_v1_chr16_-_49315397	672729	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	672836	-	BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor	0.99482	0.0	denovo_WM_7:10:0.736
chr17	39968836	39968968	reg1000521.p2	14.060	+	TSC_hg19_v1_chr17_-_39968872 AK056085	-37	-	NM_006455	-452	-	TSC_hg19_v1_chr17_-_39968202 DQ893598 EU831442 EU831534 CU674526 U47621 BC011701 AK222945 BC007942 AK301301 BC001047 AJ250583	-702	-	AK092708 AX747682 NM_021939	59	+	AB045981 TSC_hg19_v1_chr17_+_39969204	300	+	TSC_hg19_v1_chr17_+_39969205 BX537452 AL832985 BC016467 AK092042 AX747329 AK172811 AK296107 DQ894994 EU831946 EU832041 AB463638 AF337909	343	+	AK056085|LEPREL4|10609|leprecan-like 4##NM_006455|LEPREL4|10609|leprecan-like 4##DQ893598|LEPREL4|10609|leprecan-like 4##EU831442|LEPREL4|10609|leprecan-like 4##EU831534|LEPREL4|10609|leprecan-like 4##U47621|LEPREL4|10609|leprecan-like 4##BC011701|LEPREL4|10609|leprecan-like 4##AK222945|LEPREL4|10609|leprecan-like 4##BC007942|LEPREL4|10609|leprecan-like 4##AK301301|LEPREL4|10609|leprecan-like 4##BC001047|LEPREL4|10609|leprecan-like 4##AJ250583|LEPREL4|10609|leprecan-like 4##AK092708|FKBP10|60681|FK506 binding protein 10, 65 kDa##NM_021939|FKBP10|60681|FK506 binding protein 10, 65 kDa##AB045981|FKBP10|60681|FK506 binding protein 10, 65 kDa##BX537452|FKBP10|60681|FK506 binding protein 10, 65 kDa##AL832985|FKBP10|60681|FK506 binding protein 10, 65 kDa##BC016467|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK092042|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK172811|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK296107|FKBP10|60681|FK506 binding protein 10, 65 kDa##DQ894994|FKBP10|60681|FK506 binding protein 10, 65 kDa##EU831946|FKBP10|60681|FK506 binding protein 10, 65 kDa##EU832041|FKBP10|60681|FK506 binding protein 10, 65 kDa##AF337909|FKBP10|60681|FK506 binding protein 10, 65 kDa	0.998363	0.0	denovo_WM_7:20:0.442	denovo_WM_7:21:0.442
chr12	12878630	12878795	reg1000125.p2	14.058	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-8586	+	AK096388 NM_006143	-29592	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-113829	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	144	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	59865	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	87578	+	AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	0.997175	0.0	denovo_WM_7:-24:0.976
chr10	73982757	73982891	reg1000457.p1	14.056	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-6713	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-7036	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-7060	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	51000	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	131854	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	132102	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	1.221321	0.0	
chr17	4280714	4280860	reg1000595.p1	14.049	+	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	-10879	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	-11076	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-113636	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	56455	+	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	121449	+	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	177887	-	AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a	0.995784	0.0	
chr10	64288344	64288494	reg1000474.p1	14.047	+	AJ505150 NM_199452	-8213	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-154376	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-259880	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	276123	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	276238	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	287678	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.998233	0.0	denovo_WM_7:-13:0.761
chr12	96455818	96455968	reg1000557.p1	14.037	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-26478	-	CR457068 AB590523 AB209740 J02959 TSC_hg19_v1_chr12_-_96429366 BC032528 J03459 NM_000895 AK308184	-26560	-	BC096096 BC096097 BC096098 BC096099 D16626 AK303544 NM_002108 AK298736 AK297004 TSC_hg19_v1_chr12_-_96390137	-65819	-	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	132233	+	TSC_hg19_v1_chr12_+_96588254 BC017371	132374	+	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	338090	-	AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##CR457068|LTA4H|4048|leukotriene A4 hydrolase##AB209740|LTA4H|4048|leukotriene A4 hydrolase##J02959|LTA4H|4048|leukotriene A4 hydrolase##BC032528|LTA4H|4048|leukotriene A4 hydrolase##J03459|LTA4H|4048|leukotriene A4 hydrolase##NM_000895|LTA4H|4048|leukotriene A4 hydrolase##AK308184|LTA4H|4048|leukotriene A4 hydrolase##BC096096|HAL|3034|histidine ammonia-lyase##BC096097|HAL|3034|histidine ammonia-lyase##BC096098|HAL|3034|histidine ammonia-lyase##BC096099|HAL|3034|histidine ammonia-lyase##D16626|HAL|3034|histidine ammonia-lyase##AK303544|HAL|3034|histidine ammonia-lyase##NM_002108|HAL|3034|histidine ammonia-lyase##AK298736|HAL|3034|histidine ammonia-lyase##AK297004|HAL|3034|histidine ammonia-lyase##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17	0.993179	0.992415	denovo_WM_7:23:0.897	CTCF.p2:-67:0.992
chr13	41636179	41636325	reg1000384.p2	14.031	+	TSC_hg19_v1_chr13_+_41635650 AK000979 AK314525 AK001557 AK297536 BC108310 NM_007187 BC104879	-565	+	BX640798 TSC_hg19_v1_chr13_-_41635093	-1167	-	TSC_hg19_v1_chr13_-_41593499 NM_172373	-42753	-	AL833839 EU832523 EU832605 BC051349 TSC_hg19_v1_chr13_-_41706883 BC000560 AK056633 AK299627 AK096608 NM_152903	70543	-	CR533558 CU692470 AB464601 AM393035 AM393575 DQ890838 DQ893994 TSC_hg19_v1_chr13_-_41768505	132205	-	TSC_hg19_v1_chr13_-_41768706 AK299614 AL136782 AK315589 BC022033 FJ150424 NM_032138 AK091344 AX746923	132373	-	AK000979|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK314525|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK001557|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK297536|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BC108310|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##NM_007187|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BC104879|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BX640798|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_172373|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AL833839|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832523|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832605|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC051349|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC000560|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK056633|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK299627|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK096608|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##NM_152903|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##CR533558|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AM393035|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AM393575|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##DQ890838|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##DQ893994|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK299614|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AL136782|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK315589|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##BC022033|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##FJ150424|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##NM_032138|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK091344|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7	1.888659	0.0	denovo_WM_7:3:0.598	denovo_WM_7:-11:0.639
chr18	7084112	7084292	reg1002406.p1	14.027	+	NM_001010000 BX648684 AK308259 AK302026	-249737	+	NM_001243517	-572788	+	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	-669287	-	BC144590 NM_005559 X58531	33582	-	NM_001105581	146934	+	NM_001105244 NM_002845 TSC_hg19_v1_chr18_+_7567321	483115	+	NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##BC144590|LAMA1|284217|laminin, alpha 1##NM_005559|LAMA1|284217|laminin, alpha 1##X58531|LAMA1|284217|laminin, alpha 1##NM_001105581|LRRC30|339291|leucine rich repeat containing 30##NM_001105244|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_002845|PTPRM|5797|protein tyrosine phosphatase, receptor type, M	0.997692	0.0	denovo_WM_7:-34:0.266	denovo_WM_7:-35:0.334	denovo_WM_7:-36:0.321
chr4	109039770	109039917	reg1000524.p1	14.027	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-128770	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-128831	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-128907	+	AK303272 NM_001166119	48071	-	TSC_hg19_v1_chr4_+_109088684 BC020624	48841	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	49956	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	0.0	0.0	
chr1	161708602	161708744	reg1000467.p1	14.025	+	AY670683 AY670684 AY670685 AY670686 AY670687 NM_001002901 AY786314	-16218	+	AF531423 NM_001184866 NM_001184867 NM_001184870 NM_001184871 NM_001184872 NM_001184873 NM_032738	-31912	+	NM_001002273 NM_001002274 NM_001002275 NM_001190828 NM_004001 AF543826 M31933 X17653 AK308150 AB209585 BC062629 X52473 X62573 BC146678 M28696 M31934 BC031992 BC141826 U90941 AB590317 BC148273 CR407635 CU689254 DQ891344 DQ894525 U87560 U87561 U87562 U87563 U87564 U87565 U87566 U87567 U87568 U87569 U87570 U87571 U87572 U87573 U87574 U87575 U87576 U87577 M31935	-75681	+	TSC_hg19_v1_chr1_+_161719575 BC006286 AF119226 NM_007240 DQ892766 DQ896011 CU675333 BT006633	10893	+	NM_007348 TSC_hg19_v1_chr1_+_161736080 AB015856	27397	+	AF005887 AK290498 TSC_hg19_v1_chr1_+_161736109	27437	+	AY670683|FCRLB|127943|Fc receptor-like B##AY670684|FCRLB|127943|Fc receptor-like B##AY670685|FCRLB|127943|Fc receptor-like B##AY670686|FCRLB|127943|Fc receptor-like B##AY670687|FCRLB|127943|Fc receptor-like B##NM_001002901|FCRLB|127943|Fc receptor-like B##AY786314|FCRLB|127943|Fc receptor-like B##AF531423|FCRLA|84824|Fc receptor-like A##NM_001184866|FCRLA|84824|Fc receptor-like A##NM_001184867|FCRLA|84824|Fc receptor-like A##NM_001184870|FCRLA|84824|Fc receptor-like A##NM_001184871|FCRLA|84824|Fc receptor-like A##NM_001184872|FCRLA|84824|Fc receptor-like A##NM_001184873|FCRLA|84824|Fc receptor-like A##NM_032738|FCRLA|84824|Fc receptor-like A##NM_001002273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002274|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002275|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001190828|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_004001|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AF543826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31933|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X17653|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AK308150|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AB209585|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X52473|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X62573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC146678|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M28696|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31934|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC031992|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC141826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U90941|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##BC148273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##CR407635|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##DQ891344|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##DQ894525|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87560|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87561|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87562|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87563|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87564|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87565|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87566|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87567|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87568|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87569|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87570|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87571|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87572|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87574|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87575|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87576|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87577|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31935|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC006286|DUSP12|11266|dual specificity phosphatase 12##AF119226|DUSP12|11266|dual specificity phosphatase 12##NM_007240|DUSP12|11266|dual specificity phosphatase 12##DQ892766|DUSP12|11266|dual specificity phosphatase 12##DQ896011|DUSP12|11266|dual specificity phosphatase 12##BT006633|DUSP12|11266|dual specificity phosphatase 12##NM_007348|ATF6|22926|activating transcription factor 6##AB015856|ATF6|22926|activating transcription factor 6##AF005887|ATF6|22926|activating transcription factor 6##AK290498|ATF6|22926|activating transcription factor 6	0.994523	0.81472	denovo_WM_7:-19:0.780	CTCF.p2:47:0.815
chr14	68938358	68938516	reg1000430.p2	14.016	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-651917	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-655138	-	AK315462 NM_152443	-769835	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	321283	-	NM_001244698 NM_004926	322193	-	NM_001244701 AB528867	324547	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	1.729032	0.0	denovo_WM_7:-2:0.730	denovo_WM_7:-18:0.952
chr13	28842933	28843100	reg1000484.p1	14.008	+	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	-130350	+	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	-168329	-	NM_001105577	-280243	-	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	226228	-	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	390192	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	390278	+	AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##NM_001105577|PRHOXNB|646625|parahox cluster neighbor##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein	0.0	0.0	
chr15	45337711	45337843	reg1000641.p1	14.007	+	NM_003104 TSC_hg19_v1_chr15_+_45315395 AK312444 U07361 L29008 BC021085 AK295656 AK296574 AK309672 BC025295 AB529056 DQ892769 DQ896016	-22387	+	BC029537 NM_152448 DQ890983 DQ894158	-88869	+	NM_080745 NM_182985	-309218	+	TSC_hg19_v1_chr15_-_45406336 AF230496	68554	-	TSC_hg19_v1_chr15_-_45406363 AF267981 NM_014080	68586	-	TSC_hg19_v1_chr15_+_45406523 NM_207581 AK303955 BC137465 BX537581 DQ489734	68817	+	NM_003104|SORD|6652|sorbitol dehydrogenase##AK312444|SORD|6652|sorbitol dehydrogenase##U07361|SORD|6652|sorbitol dehydrogenase##L29008|SORD|6652|sorbitol dehydrogenase##BC021085|SORD|6652|sorbitol dehydrogenase##AK296574|SORD|6652|sorbitol dehydrogenase##AK309672|SORD|6652|sorbitol dehydrogenase##BC025295|SORD|6652|sorbitol dehydrogenase##DQ892769|SORD|6652|sorbitol dehydrogenase##DQ896016|SORD|6652|sorbitol dehydrogenase##BC029537|C15orf43|145645|chromosome 15 open reading frame 43##NM_152448|C15orf43|145645|chromosome 15 open reading frame 43##DQ890983|C15orf43|145645|chromosome 15 open reading frame 43##DQ894158|C15orf43|145645|chromosome 15 open reading frame 43##NM_080745|TRIM69|140691|tripartite motif containing 69##NM_182985|TRIM69|140691|tripartite motif containing 69##AF230496|DUOX2|50506|dual oxidase 2##AF267981|DUOX2|50506|dual oxidase 2##NM_014080|DUOX2|50506|dual oxidase 2##NM_207581|DUOXA2|405753|dual oxidase maturation factor 2##AK303955|DUOXA2|405753|dual oxidase maturation factor 2##BC137465|DUOXA2|405753|dual oxidase maturation factor 2##BX537581|DUOXA2|405753|dual oxidase maturation factor 2##DQ489734|DUOXA2|405753|dual oxidase maturation factor 2	1.019251	0.0	
chr13	49154427	49154559	reg1000431.p1	13.998	+	AK122778 TSC_hg19_v1_chr13_-_49110119	-44375	-	AB209543 TSC_hg19_v1_chr13_-_49107365	-47129	-	TSC_hg19_v1_chr13_-_49107313 AK315703 NM_001268	-47204	-	AB041947 AB038269 BC096832 BC069160 NM_020377 AB590816	126292	+	TSC_hg19_v1_chr13_+_49550058 AJ749706 NM_001079673 BX648706 BX648141 AK056071	395667	+	TSC_hg19_v1_chr13_+_49550791 BC051029	396228	+	AK122778|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AB209543|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK315703|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##NM_001268|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AB041947|CYSLTR2|57105|cysteinyl leukotriene receptor 2##AB038269|CYSLTR2|57105|cysteinyl leukotriene receptor 2##BC096832|CYSLTR2|57105|cysteinyl leukotriene receptor 2##BC069160|CYSLTR2|57105|cysteinyl leukotriene receptor 2##NM_020377|CYSLTR2|57105|cysteinyl leukotriene receptor 2##AJ749706|FNDC3A|22862|fibronectin type III domain containing 3A##NM_001079673|FNDC3A|22862|fibronectin type III domain containing 3A##BX648706|FNDC3A|22862|fibronectin type III domain containing 3A##BX648141|FNDC3A|22862|fibronectin type III domain containing 3A##AK056071|FNDC3A|22862|fibronectin type III domain containing 3A##BC051029|FNDC3A|22862|fibronectin type III domain containing 3A	1.039115	0.680935	denovo_WM_7:-16:0.457	denovo_WM_7:-17:0.457	CTCF.p2:34:0.681
chr7	35768938	35769094	reg1000528.p1	13.991	+	TSC_hg19_v1_chr7_-_35734795 NM_022373	-34238	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	-34277	-	TSC_hg19_v1_chr7_-_35734533 BC005091	-34420	-	NM_001011553 NM_001242956 NM_001788 TSC_hg19_v1_chr7_+_35840766 BC107718 AK290545	71694	+	TSC_hg19_v1_chr7_+_35840828 AB073389 AK223225 AK223241 AK297883 AK298453 BC025987 BX571755 S72008 BC093640 BC093642	71817	+	DQ232879 TSC_hg19_v1_chr7_+_35840853 BC067264 AK300601 AB209677	71836	+	NM_022373|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##BC005091|HERPUD2|64224|HERPUD family member 2##NM_001011553|SEPT7|989|septin 7##NM_001242956|SEPT7|989|septin 7##NM_001788|SEPT7|989|septin 7##BC107718|SEPT7|989|septin 7##AK290545|SEPT7|989|septin 7##AB073389|SEPT7|989|septin 7##AK223225|SEPT7|989|septin 7##AK223241|SEPT7|989|septin 7##AK297883|SEPT7|989|septin 7##AK298453|SEPT7|989|septin 7##BC025987|SEPT7|989|septin 7##BX571755|SEPT7|989|septin 7##S72008|SEPT7|989|septin 7##BC093640|SEPT7|989|septin 7##BC093642|SEPT7|989|septin 7##DQ232879|SEPT7|989|septin 7##BC067264|SEPT7|989|septin 7##AK300601|SEPT7|989|septin 7##AB209677|SEPT7|989|septin 7	0.986139	0.0	denovo_WM_7:-2:0.704
chr17	38768847	38769003	reg1000529.p1	13.987	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-47207	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-111079	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-169106	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	35145	-	BC069196 TSC_hg19_v1_chr17_-_38804818	35871	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	52425	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	0.990903	0.0	denovo_WM_7:-25:0.233	denovo_WM_7:-26:0.233	denovo_WM_7:-27:0.233	denovo_WM_7:-28:0.233
chr15	91440543	91440692	reg1000625.p1	13.983	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	-12344	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	-12916	+	NM_002569 X17094	-28733	+	TSC_hg19_v1_chr15_+_91445984 D55649 L28821	5359	+	AK289863 TSC_hg19_v1_chr15_+_91446685	6008	+	BC136448 BC144111 NM_006122	6802	+	DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##D55649|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##L28821|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##AK289863|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##BC136448|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##BC144111|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##NM_006122|MAN2A2|4122|mannosidase, alpha, class 2A, member 2	1.105975	0.0	denovo_WM_7:39:0.434	denovo_WM_7:40:0.449
chr7	74306630	74306785	reg1000592.p1	13.982	+	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	-24	-	TSC_hg19_v1_chr7_-_74306679 BC002581	-32	-	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	-38868	-	TSC_hg19_v1_chr7_-_74306725 BC095487	14	-	BC052588 TSC_hg19_v1_chr7_+_74306933 BC027480 D38436 D38502 AK309660	213	+	BC147030 BC147031 NM_001145063	72373	+	AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC052588|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##BC027480|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38436|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38502|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##AK309660|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##NM_001145063|GATSL1|389523|GATS protein-like 1	0.0	0.0	
chr19	16478200	16478358	reg1000406.p3	13.981	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-42510	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-42638	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-169529	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	104497	-	TSC_hg19_v1_chr19_-_16582810 AK291359	104573	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	128691	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	1.986245	0.0	denovo_WM_7:36:0.924	denovo_WM_7:51:0.915
chr17	40307141	40307302	reg1000435.p1	13.980	+	TSC_hg19_v1_chr17_-_40307015 BC114439 BC106039 NM_001252039 NM_004583 NM_201434	-183	-	TSC_hg19_v1_chr17_-_40307008 AK310234	-223	-	TSC_hg19_v1_chr17_-_40306986 U18420	-260	-	TSC_hg19_v1_chr17_-_40333301 AB022698 NM_012285	26054	-	AB463761 AF041240 NM_001524	30205	-	AK298933 TSC_hg19_v1_chr17_-_40346487 BC022784 AK122777 AK123075 AK307058 BC011056 AK075277 NM_001142622 NM_001142623 NM_032484	39267	-	BC114439|RAB5C|5878|RAB5C, member RAS oncogene family##BC106039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_001252039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_004583|RAB5C|5878|RAB5C, member RAS oncogene family##NM_201434|RAB5C|5878|RAB5C, member RAS oncogene family##AK310234|RAB5C|5878|RAB5C, member RAS oncogene family##U18420|RAB5C|5878|RAB5C, member RAS oncogene family##AB022698|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##NM_012285|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##AF041240|HCRT|3060|hypocretin (orexin) neuropeptide precursor##NM_001524|HCRT|3060|hypocretin (orexin) neuropeptide precursor##AK298933|GHDC|84514|GH3 domain containing##BC022784|GHDC|84514|GH3 domain containing##AK122777|GHDC|84514|GH3 domain containing##AK123075|GHDC|84514|GH3 domain containing##AK307058|GHDC|84514|GH3 domain containing##BC011056|GHDC|84514|GH3 domain containing##AK075277|GHDC|84514|GH3 domain containing##NM_001142622|GHDC|84514|GH3 domain containing##NM_001142623|GHDC|84514|GH3 domain containing##NM_032484|GHDC|84514|GH3 domain containing	0.996942	0.0	denovo_WM_7:53:0.841
chr2	203164508	203164664	reg1000462.p2	13.978	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	-34014	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	-34130	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	-61318	-	TSC_hg19_v1_chr2_+_203241049 NM_001204	76460	+	TSC_hg19_v1_chr2_+_203499703 AK096090	335103	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	335273	+	BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)##AK096090|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B	0.999544	0.0	denovo_WM_7:-9:0.235	denovo_WM_7:-10:0.235	denovo_WM_7:-11:0.235	denovo_WM_7:-12:0.235
chr14	81408221	81408363	reg1000372.p2	13.970	+	BC045834 AK309833 TSC_hg19_v1_chr14_-_81408073	-234	-	NM_152446	-2409	-	AK292210 NM_000793	-710896	-	AK303378 BC024205 NM_000369 NM_001018036 NM_001142626 M31774 BC108653 BC009237 M73747 M32215 BC063613 AB209207 BC120972 BC120973 BC127628 BC127629 BC141970 S49816 AB384880 AY429111 CU687778 S45272	13574	+	D14887 TSC_hg19_v1_chr14_-_81687285 NM_015859 BC050703	278988	-	D14886 NM_201595	279282	-	BC045834|CEP128|145508|centrosomal protein 128kDa##AK309833|CEP128|145508|centrosomal protein 128kDa##NM_152446|CEP128|145508|centrosomal protein 128kDa##AK292210|DIO2|1734|deiodinase, iodothyronine, type II##NM_000793|DIO2|1734|deiodinase, iodothyronine, type II##BC024205|TSHR|7253|thyroid stimulating hormone receptor##NM_000369|TSHR|7253|thyroid stimulating hormone receptor##NM_001018036|TSHR|7253|thyroid stimulating hormone receptor##NM_001142626|TSHR|7253|thyroid stimulating hormone receptor##M31774|TSHR|7253|thyroid stimulating hormone receptor##BC108653|TSHR|7253|thyroid stimulating hormone receptor##BC009237|TSHR|7253|thyroid stimulating hormone receptor##M73747|TSHR|7253|thyroid stimulating hormone receptor##M32215|TSHR|7253|thyroid stimulating hormone receptor##BC063613|TSHR|7253|thyroid stimulating hormone receptor##AB209207|TSHR|7253|thyroid stimulating hormone receptor##BC120972|TSHR|7253|thyroid stimulating hormone receptor##BC120973|TSHR|7253|thyroid stimulating hormone receptor##BC127628|TSHR|7253|thyroid stimulating hormone receptor##BC127629|TSHR|7253|thyroid stimulating hormone receptor##BC141970|TSHR|7253|thyroid stimulating hormone receptor##S49816|TSHR|7253|thyroid stimulating hormone receptor##AY429111|TSHR|7253|thyroid stimulating hormone receptor##S45272|TSHR|7253|thyroid stimulating hormone receptor##D14887|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_015859|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##BC050703|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##D14886|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_201595|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa	0.994624	0.0	denovo_WM_7:10:0.540	denovo_WM_7:11:0.255
chr12	110481115	110481246	reg1000678.p1	13.967	+	AK302535 BC032833 TSC_hg19_v1_chr12_+_110437393 CU691256 AY364251	-43737	+	TSC_hg19_v1_chr12_+_110437339 AF064604	-43847	+	TSC_hg19_v1_chr12_+_110437234 AK025261 BC057817 NM_033121	-43919	+	TSC_hg19_v1_chr12_-_110486328 AK021447 BC041968	5149	-	AK097461 NM_207435	24319	-	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	81041	+	AK302535|ANKRD13A|88455|ankyrin repeat domain 13A##BC032833|ANKRD13A|88455|ankyrin repeat domain 13A##AY364251|ANKRD13A|88455|ankyrin repeat domain 13A##AF064604|ANKRD13A|88455|ankyrin repeat domain 13A##AK025261|ANKRD13A|88455|ankyrin repeat domain 13A##BC057817|ANKRD13A|88455|ankyrin repeat domain 13A##NM_033121|ANKRD13A|88455|ankyrin repeat domain 13A##AK021447|C12orf76|400073|chromosome 12 open reading frame 76##BC041968|C12orf76|400073|chromosome 12 open reading frame 76##AK097461|C12orf76|400073|chromosome 12 open reading frame 76##NM_207435|C12orf76|400073|chromosome 12 open reading frame 76##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)	0.99873	0.771275	denovo_WM_7:5:0.264	denovo_WM_7:6:0.708	CTCF.p2:-43:0.771
chr1	226369855	226369970	reg1000548.p1	13.965	+	TSC_hg19_v1_chr1_+_226271319 BC032899	-98552	+	TSC_hg19_v1_chr1_+_226250433 BC081560 BC081561	-119479	+	TSC_hg19_v1_chr1_+_226250421 AK291102 AK293541 BC029405 BC067757 BC095447 M11354 BC066901	-119486	+	BC039575 TSC_hg19_v1_chr1_-_226374400	4488	-	AY150218 TSC_hg19_v1_chr1_-_226374401 BC045533 BC060792 NM_022735 AK025520 AK314468 AB043587	4505	-	BC111974 BC113441 BC143784 TSC_hg19_v1_chr1_+_226411364 AF211891 NM_031944	41438	+	BC081560|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC081561|H3F3A|3020|H3 histone, family 3A##AK291102|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##AK293541|H3F3A|3020|H3 histone, family 3A##BC029405|H3F3A|3020|H3 histone, family 3A##BC067757|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC095447|H3F3A|3020|H3 histone, family 3A##M11354|H3F3A|3020|H3 histone, family 3A##BC066901|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC039575|ACBD3|64746|acyl-CoA binding domain containing 3##AY150218|ACBD3|64746|acyl-CoA binding domain containing 3##BC045533|ACBD3|64746|acyl-CoA binding domain containing 3##BC060792|ACBD3|64746|acyl-CoA binding domain containing 3##NM_022735|ACBD3|64746|acyl-CoA binding domain containing 3##AK025520|ACBD3|64746|acyl-CoA binding domain containing 3##AK314468|ACBD3|64746|acyl-CoA binding domain containing 3##AB043587|ACBD3|64746|acyl-CoA binding domain containing 3##BC111974|MIXL1|83881|Mix paired-like homeobox##BC113441|MIXL1|83881|Mix paired-like homeobox##BC143784|MIXL1|83881|Mix paired-like homeobox##AF211891|MIXL1|83881|Mix paired-like homeobox##NM_031944|MIXL1|83881|Mix paired-like homeobox	0.998998	0.0	denovo_WM_7:23:0.447	denovo_WM_7:24:0.521
chr13	49684351	49684505	reg1000588.p1	13.965	+	TSC_hg19_v1_chr13_+_49550955 BC136617 BC144301 BC132812	-133444	+	TSC_hg19_v1_chr13_+_49550938 BX640739	-133503	+	TSC_hg19_v1_chr13_+_49550791 BC051029	-133707	+	TSC_hg19_v1_chr13_+_49684452 AK302415 AJ749707 NM_014923 AB023187 BC107793	28	+	AB463896 AY603964 NM_001507	110044	+	NM_001193478 NM_030911 TSC_hg19_v1_chr13_+_49822076 BC022801 BC092434 AK312835 BC032889 BC070238 AK297400 BC009562 AY027525 BC048092 BC125202 BC125203	137661	+	BC136617|FNDC3A|22862|fibronectin type III domain containing 3A##BC144301|FNDC3A|22862|fibronectin type III domain containing 3A##BC132812|FNDC3A|22862|fibronectin type III domain containing 3A##BX640739|FNDC3A|22862|fibronectin type III domain containing 3A##BC051029|FNDC3A|22862|fibronectin type III domain containing 3A##AK302415|FNDC3A|22862|fibronectin type III domain containing 3A##AJ749707|FNDC3A|22862|fibronectin type III domain containing 3A##NM_014923|FNDC3A|22862|fibronectin type III domain containing 3A##AB023187|FNDC3A|22862|fibronectin type III domain containing 3A##BC107793|FNDC3A|22862|fibronectin type III domain containing 3A##AY603964|MLNR|2862|motilin receptor##NM_001507|MLNR|2862|motilin receptor##NM_001193478|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##NM_030911|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC022801|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC092434|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK312835|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC032889|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC070238|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK297400|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC009562|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY027525|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC048092|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125202|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125203|CDADC1|81602|cytidine and dCMP deaminase domain containing 1	0.989292	0.0	denovo_WM_7:15:0.430	denovo_WM_7:16:0.409
chr19	16695079	16695222	reg1000508.p1	13.965	+	TSC_hg19_v1_chr19_+_16683381 AK094229	-11753	+	TSC_hg19_v1_chr19_-_16683205 BC062562 NM_024881	-11954	-	TSC_hg19_v1_chr19_-_16653256 NM_006387	-41887	-	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	43850	-	TSC_hg19_v1_chr19_-_16770944 AK025602 BC069279 BX648276	75779	-	TSC_hg19_v1_chr19_-_16770956 NM_024104	75812	-	BC062562|SLC35E1|79939|solute carrier family 35, member E1##NM_024881|SLC35E1|79939|solute carrier family 35, member E1##NM_006387|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26##AK025602|C19orf42|79086|chromosome 19 open reading frame 42##BC069279|C19orf42|79086|chromosome 19 open reading frame 42##BX648276|C19orf42|79086|chromosome 19 open reading frame 42##NM_024104|C19orf42|79086|chromosome 19 open reading frame 42	2.848786	0.0	denovo_WM_7:-2:0.563	denovo_WM_7:-19:0.873	denovo_WM_7:-68:0.839
chr19	18954232	18954382	reg1000589.p2	13.961	+	TSC_hg19_v1_chr19_+_18942822 U65533 AF074016 D86988 U59323	-11494	+	TSC_hg19_v1_chr19_+_18942742 NM_002911 BC039817	-11562	+	AB086984 BC033676 BC110847 L32137 BC125092 TSC_hg19_v1_chr19_-_18902115 AK074508 AK223216 AK290595 AK296586 AK297798 AK297814 NM_000095	-52210	-	BC032615 TSC_hg19_v1_chr19_-_19006935 M62302 BC022450 NM_001492 NM_021267 NM_198207	52644	-	TSC_hg19_v1_chr19_-_19007395 BC084582 AK293463	53158	-	AB528108 AM393761 CR456886 DQ893417 DQ896735 TSC_hg19_v1_chr19_-_19030164 BC017285 BC003155 AJ249366 AL136928 BC007250	75858	-	U65533|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##AF074016|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##D86988|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##U59323|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##NM_002911|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##BC039817|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##AB086984|COMP|1311|cartilage oligomeric matrix protein##BC033676|COMP|1311|cartilage oligomeric matrix protein##BC110847|COMP|1311|cartilage oligomeric matrix protein##L32137|COMP|1311|cartilage oligomeric matrix protein##BC125092|COMP|1311|cartilage oligomeric matrix protein##AK074508|COMP|1311|cartilage oligomeric matrix protein##AK223216|COMP|1311|cartilage oligomeric matrix protein##AK290595|COMP|1311|cartilage oligomeric matrix protein##AK296586|COMP|1311|cartilage oligomeric matrix protein##AK297798|COMP|1311|cartilage oligomeric matrix protein##AK297814|COMP|1311|cartilage oligomeric matrix protein##NM_000095|COMP|1311|cartilage oligomeric matrix protein##BC032615|CERS1|10715|ceramide synthase 1##M62302|GDF1|2657|growth differentiation factor 1##NM_001492|GDF1|2657|growth differentiation factor 1##NM_021267|CERS1|10715|ceramide synthase 1##NM_198207|CERS1|10715|ceramide synthase 1##BC084582|CERS1|10715|ceramide synthase 1##AM393761|COPE|11316|coatomer protein complex, subunit epsilon##CR456886|COPE|11316|coatomer protein complex, subunit epsilon##DQ893417|COPE|11316|coatomer protein complex, subunit epsilon##DQ896735|COPE|11316|coatomer protein complex, subunit epsilon##BC017285|COPE|11316|coatomer protein complex, subunit epsilon##BC003155|COPE|11316|coatomer protein complex, subunit epsilon##AJ249366|COPE|11316|coatomer protein complex, subunit epsilon##AL136928|COPE|11316|coatomer protein complex, subunit epsilon##BC007250|COPE|11316|coatomer protein complex, subunit epsilon	0.986244	0.0	denovo_WM_7:28:0.247	denovo_WM_7:29:0.247	denovo_WM_7:30:0.247	denovo_WM_7:31:0.247
chr7	33790015	33790171	reg1000465.p2	13.960	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-621012	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-641116	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-687771	-	AK289963 NM_133468 AK096150 BC060868	155049	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	907826	+	DQ287932 NM_015283	1287559	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	1.784604	0.0	denovo_WM_7:15:0.753	denovo_WM_7:30:0.747
chr7	70294269	70294389	reg1000432.p1	13.933	+	TSC_hg19_v1_chr7_+_70231164 AK296981	-63124	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1229741	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1230000	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	303459	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1507449	-	NM_001017440 TSC_hg19_v1_chr7_-_71802376	1507975	-	AK296981|AUTS2|26053|autism susceptibility candidate 2##BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1##NM_001017440|CALN1|83698|calneuron 1	0.0	0.923657	CTCF.p2:-11:0.924
chr5	459228	459396	reg1000545.p1	13.932	+	TSC_hg19_v1_chr5_+_443320 AK074086 GU727644 NM_007277 BC064569	-15962	+	TSC_hg19_v1_chr5_-_443213 BC014011 BC029796 NM_138464	-16082	-	AB033060 BC151852 BC152406 EU293605 NM_001242412 NM_020731	-155022	+	BC045808 TSC_hg19_v1_chr5_-_473152 BC086861 BC072677 BC064928 AF370427 AK023178	13800	-	BC101669 BC101671 BC143328 U28043 BC011555 NM_004174 TSC_hg19_v1_chr5_-_524565	65193	-	NM_018140 TSC_hg19_v1_chr5_+_612451	153116	+	AK074086|EXOC3|11336|exocyst complex component 3##GU727644|EXOC3|11336|exocyst complex component 3##NM_007277|EXOC3|11336|exocyst complex component 3##BC064569|EXOC3|11336|exocyst complex component 3##BC014011|C5orf55|116349|chromosome 5 open reading frame 55##BC029796|C5orf55|116349|chromosome 5 open reading frame 55##NM_138464|C5orf55|116349|chromosome 5 open reading frame 55##AB033060|AHRR|57491|aryl-hydrocarbon receptor repressor##BC151852|AHRR|57491|aryl-hydrocarbon receptor repressor##BC152406|AHRR|57491|aryl-hydrocarbon receptor repressor##EU293605|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_001242412|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_020731|AHRR|57491|aryl-hydrocarbon receptor repressor##BC045808|PP7080|25845|uncharacterized LOC25845##BC086861|PP7080|25845|uncharacterized LOC25845##BC072677|PP7080|25845|uncharacterized LOC25845##AF370427|PP7080|25845|uncharacterized LOC25845##BC101669|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##BC101671|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##BC143328|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##U28043|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##BC011555|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##NM_004174|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##NM_018140|CEP72|55722|centrosomal protein 72kDa	1.513836	0.0	denovo_WM_7:-8:0.767
chr2	207110697	207110828	reg1000497.p2	13.924	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	-28064	-	TSC_hg19_v1_chr2_+_207024617 AK291910 AK310096 D28350 BC067787 BC029316 BC004931 AB529032 CU688340 BT007079 CR456825	-86104	+	S81522 X60656 TSC_hg19_v1_chr2_+_207024348 BC000211 X60489	-86363	+	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	28705	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	197571	+	AK129906 TSC_hg19_v1_chr2_+_207406857	296074	+	AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK291910|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK310096|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##D28350|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC067787|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC029316|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC004931|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BT007079|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##CR456825|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##S81522|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60656|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC000211|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60489|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23##AK129906|ADAM23|8745|ADAM metallopeptidase domain 23	0.984515	0.0	
chr8	103001059	103001224	reg1000516.p1	13.917	+	NM_032041	-197703	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-197941	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-197958	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	135382	-	NM_001040630	135993	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	250032	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	0.98456	0.210607	CTCF.p2:-21:0.211
chr13	91708689	91708869	reg1000320.p2	13.915	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-3383910	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-5335340	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-7252279	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	342125	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	2170648	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	3423047	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	2.966575	0.0	denovo_WM_7:-21:0.296	denovo_WM_7:-22:0.231	denovo_WM_7:-57:0.232	denovo_WM_7:-58:0.298
chr18	3995641	3995755	reg1000506.p1	13.912	+	AK294777 AK294717 NM_001242762 NM_001242763	-120971	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-121414	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-150368	-	AK304101 TSC_hg19_v1_chr18_-_4455255	459555	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	459572	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	1201554	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.990558	0.900977	CTCF.p2:-5:0.901	denovo_WM_7:31:0.733
chr9	129946555	129946688	reg1000471.p1	13.906	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-61591	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-61659	-	TSC_hg19_v1_chr9_-_129884914 AK074726 BC012368 AK307175	-61713	-	NM_032293 AK293732 AK095679	80186	+	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	212825	+	TSC_hg19_v1_chr9_-_130186602 AK124330	239945	-	NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##AK074726|ANGPTL2|23452|angiopoietin-like 2##BC012368|ANGPTL2|23452|angiopoietin-like 2##NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8	0.989138	0.0	denovo_WM_7:-11:0.695	denovo_WM_7:-12:0.269
chr14	71270047	71270217	reg1000442.p2	13.900	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-161523	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-202755	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-202772	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	5677	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	104001	+	TSC_hg19_v1_chr14_+_71374441 BC140784	104319	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	1.8757	0.0	denovo_WM_7:8:0.281	denovo_WM_7:10:0.359
chr6	149806100	149806270	reg1000542.p2	13.898	+	TSC_hg19_v1_chr6_-_149806151 AB458221 AB458222 BC157832 NM_207360	-42	-	TSC_hg19_v1_chr6_-_149806031 AK127932	-118	-	AY340238 NM_001002255 BC130305 HQ258040	-84677	+	TSC_hg19_v1_chr6_-_149867153 CU676802 GQ129364 GQ129365 BC064134	60959	-	TSC_hg19_v1_chr6_-_149867172 AF357880 AK092069 AX747342 BX537536 BC107684	60982	-	BC020986 TSC_hg19_v1_chr6_-_149867195 AK315388 NM_139126	61020	-	AB458221|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458222|ZC3H12D|340152|zinc finger CCCH-type containing 12D##BC157832|ZC3H12D|340152|zinc finger CCCH-type containing 12D##NM_207360|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AK127932|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##GQ129364|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129365|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC064134|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AF357880|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AK092069|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BX537536|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC107684|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC020986|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AK315388|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##NM_139126|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4	1.940244	0.0	denovo_WM_7:1:0.486	denovo_WM_7:2:0.253	denovo_WM_7:17:0.900
chr17	7518603	7518729	reg1000550.p2	13.881	+	TSC_hg19_v1_chr17_-_7518216 BC067272 BC020090 NM_004860	-360	-	BT009817 CU676498 CU690884 AK313836 BC051907 U31501 TSC_hg19_v1_chr17_-_7518073	-704	-	EU352656 TSC_hg19_v1_chr17_+_7517349 EU352670 EU352671 EU352672 EU352673 EU352674 EU352675 EU352676	-1344	+	TSC_hg19_v1_chr17_-_7531182 BC065922 BC095466 BC011751 NM_133491	12485	-	TSC_hg19_v1_chr17_+_7531286 AK302603 EU352657 EU352658 X16351 EU352665 EU352666 EU352667 EU352668 EU352669	12680	+	TSC_hg19_v1_chr17_+_7533444 EU352659	14759	+	BC067272|FXR2|9513|fragile X mental retardation, autosomal homolog 2##BC020090|FXR2|9513|fragile X mental retardation, autosomal homolog 2##NM_004860|FXR2|9513|fragile X mental retardation, autosomal homolog 2##BT009817|FXR2|9513|fragile X mental retardation, autosomal homolog 2##AK313836|FXR2|9513|fragile X mental retardation, autosomal homolog 2##BC051907|FXR2|9513|fragile X mental retardation, autosomal homolog 2##U31501|FXR2|9513|fragile X mental retardation, autosomal homolog 2##EU352656|SHBG|6462|sex hormone-binding globulin##EU352670|SHBG|6462|sex hormone-binding globulin##EU352671|SHBG|6462|sex hormone-binding globulin##EU352672|SHBG|6462|sex hormone-binding globulin##EU352673|SHBG|6462|sex hormone-binding globulin##EU352674|SHBG|6462|sex hormone-binding globulin##EU352675|SHBG|6462|sex hormone-binding globulin##EU352676|SHBG|6462|sex hormone-binding globulin##BC065922|SAT2|112483|spermidine/spermine N1-acetyltransferase family member 2##BC095466|SAT2|112483|spermidine/spermine N1-acetyltransferase family member 2##BC011751|SAT2|112483|spermidine/spermine N1-acetyltransferase family member 2##NM_133491|SAT2|112483|spermidine/spermine N1-acetyltransferase family member 2##AK302603|SHBG|6462|sex hormone-binding globulin##EU352657|SHBG|6462|sex hormone-binding globulin##EU352658|SHBG|6462|sex hormone-binding globulin##X16351|SHBG|6462|sex hormone-binding globulin##EU352665|SHBG|6462|sex hormone-binding globulin##EU352666|SHBG|6462|sex hormone-binding globulin##EU352667|SHBG|6462|sex hormone-binding globulin##EU352668|SHBG|6462|sex hormone-binding globulin##EU352669|SHBG|6462|sex hormone-binding globulin##EU352659|SHBG|6462|sex hormone-binding globulin	0.997072	0.0	denovo_WM_7:-1:0.765
chr10	85786661	85786779	reg1000523.p1	13.865	+	DQ857894 NM_001165973	-2149278	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	-2151638	+	AK123978 NM_001145719	-3486146	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	112537	+	BC033760 BC051760 TSC_hg19_v1_chr10_-_85931861	145072	-	NM_207373 TSC_hg19_v1_chr10_+_85933558 AY358751	146839	+	DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein##BC033760|LOC642934|642934|uncharacterized LOC642934##BC051760|LOC642934|642934|uncharacterized LOC642934##NM_207373|C10orf99|387695|chromosome 10 open reading frame 99##AY358751|C10orf99|387695|chromosome 10 open reading frame 99	0.991493	0.111568	denovo_WM_7:-13:0.439	denovo_WM_7:-14:0.439
chr1	53152026	53152123	reg1000494.p1	13.865	+	AK128236 BC041608 NM_001042693	-53034	+	NM_015696 TSC_hg19_v1_chr1_+_53068073 AF320068 AK027683 AY358402 BC032788 DQ890863 DQ894018 CU689540	-84010	+	TSC_hg19_v1_chr1_-_53018765 BC012047 BC018753 BC035820 AK303532 NM_001009881 NM_015269 AK307579 AK095733	-133321	-	TSC_hg19_v1_chr1_-_53164009 BC015313 AK225041	11924	-	TSC_hg19_v1_chr1_-_53164020 AK225087	11943	-	TSC_hg19_v1_chr1_-_53164026 BC005992 AK022501 NM_023077	11956	-	AK128236|FAM159A|348378|family with sequence similarity 159, member A##BC041608|FAM159A|348378|family with sequence similarity 159, member A##NM_001042693|FAM159A|348378|family with sequence similarity 159, member A##NM_015696|GPX7|2882|glutathione peroxidase 7##AF320068|GPX7|2882|glutathione peroxidase 7##AK027683|GPX7|2882|glutathione peroxidase 7##AY358402|GPX7|2882|glutathione peroxidase 7##BC032788|GPX7|2882|glutathione peroxidase 7##DQ890863|GPX6|257202|glutathione peroxidase 6 (olfactory)##DQ894018|GPX7|2882|glutathione peroxidase 7##BC012047|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC018753|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC035820|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_001009881|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_015269|ZCCHC11|23318|zinc finger, CCHC domain containing 11##AK307579|ZCCHC11|23318|zinc finger, CCHC domain containing 11##AK095733|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC015313|SELRC1|65260|Sel1 repeat containing 1##AK225041|SELRC1|65260|Sel1 repeat containing 1##AK225087|SELRC1|65260|Sel1 repeat containing 1##BC005992|SELRC1|65260|Sel1 repeat containing 1##AK022501|SELRC1|65260|Sel1 repeat containing 1##NM_023077|SELRC1|65260|Sel1 repeat containing 1	0.99718	0.5055	CTCF.p2:13:0.482	denovo_WM_7:55:0.976
chr6	159248227	159248389	reg1000475.p1	13.856	+	TSC_hg19_v1_chr6_-_159240446 NM_001111077	-7852	-	TSC_hg19_v1_chr6_-_159240401 AK296738	-7895	-	AK312597 TSC_hg19_v1_chr6_-_159240398	-7910	-	NM_001195032	61310	+	TSC_hg19_v1_chr6_-_159420766 BC035675	172461	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	172511	-	NM_001111077|EZR|7430|ezrin##AK296738|EZR|7430|ezrin##AK312597|EZR|7430|ezrin##NM_001195032|C6orf99|100130967|chromosome 6 open reading frame 99##BC035675|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)	0.955095	0.0	denovo_WM_7:12:0.688
chr15	40971415	40971548	reg1000493.p1	13.838	+	TSC_hg19_v1_chr15_+_40886474 AB022190 BC014306 NM_144508 NM_170589 AK307605 AK307996 AF248041 AF461041 BC029373	-85017	+	AF173994 TSC_hg19_v1_chr15_+_40886230 BC043597	-85256	+	TSC_hg19_v1_chr15_+_40861536 AK055971 AK301706 NM_152260 CU677781	-109897	+	TSC_hg19_v1_chr15_-_40987295 AK125393	15814	-	EU362635 NM_001164270 NM_002875 NM_133487 TSC_hg19_v1_chr15_+_40987377 BC001459 AK291969 AK303089 AK313503 AK131299 NM_001164269	15870	+	TSC_hg19_v1_chr15_+_40987387 D14134 D13804	15935	+	AB022190|CASC5|57082|cancer susceptibility candidate 5##BC014306|CASC5|57082|cancer susceptibility candidate 5##NM_144508|CASC5|57082|cancer susceptibility candidate 5##NM_170589|CASC5|57082|cancer susceptibility candidate 5##AK307605|CASC5|57082|cancer susceptibility candidate 5##AK307996|CASC5|57082|cancer susceptibility candidate 5##AF248041|CASC5|57082|cancer susceptibility candidate 5##AF461041|CASC5|57082|cancer susceptibility candidate 5##BC029373|CASC5|57082|cancer susceptibility candidate 5##AF173994|CASC5|57082|cancer susceptibility candidate 5##BC043597|CASC5|57082|cancer susceptibility candidate 5##AK055971|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK301706|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##NM_152260|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK125393|LOC100505648|100505648|uncharacterized LOC100505648##EU362635|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164270|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_002875|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_133487|RAD51|5888|RAD51 homolog (S. cerevisiae)##BC001459|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK291969|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK303089|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK313503|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK131299|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164269|RAD51|5888|RAD51 homolog (S. cerevisiae)##D14134|RAD51|5888|RAD51 homolog (S. cerevisiae)##D13804|RAD51|5888|RAD51 homolog (S. cerevisiae)	0.992362	0.913063	CTCF.p2:-39:0.913	denovo_WM_7:51:0.496	denovo_WM_7:52:0.496
chr14	79400430	79400557	reg1000504.p1	13.837	+	AB018286 BC152457 NM_004796	-530401	+	TSC_hg19_v1_chr14_+_78266441 NM_001142545 NM_020421 AK299430 BX248292 BC017459 BC058906 AK096919	-1134043	+	AB464230 BT020060 BT020061 CR457433 BC051806 BC065286 TSC_hg19_v1_chr14_-_78227500 AK302246 AX775981 U51432 BC105585 BC108903 AF045184 AK292274 NM_012245 AK293619 AK316087	-1172984	-	NM_001105250 NM_138970 AK056530 BC059368 BC068469	345211	+	BC136514 AB041843 BC074882 BC063118 NM_001007023 NM_001242502 NM_001242503 U53506 AF093774 NM_013989	1277411	-	AK292210 NM_000793	1296903	-	AB018286|NRXN3|9369|neurexin 3##BC152457|NRXN3|9369|neurexin 3##NM_004796|NRXN3|9369|neurexin 3##NM_001142545|ADCK1|57143|aarF domain containing kinase 1##NM_020421|ADCK1|57143|aarF domain containing kinase 1##AK299430|ADCK1|57143|aarF domain containing kinase 1##BX248292|ADCK1|57143|aarF domain containing kinase 1##BC017459|ADCK1|57143|aarF domain containing kinase 1##BC058906|ADCK1|57143|aarF domain containing kinase 1##AK096919|ADCK1|57143|aarF domain containing kinase 1##BT020060|SNW1|22938|SNW domain containing 1##BT020061|SNW1|22938|SNW domain containing 1##CR457433|SNW1|22938|SNW domain containing 1##BC065286|SNW1|22938|SNW domain containing 1##AK302246|SNW1|22938|SNW domain containing 1##AX775981|SNW1|22938|SNW domain containing 1##U51432|SNW1|22938|SNW domain containing 1##BC105585|SNW1|22938|SNW domain containing 1##BC108903|SNW1|22938|SNW domain containing 1##AF045184|SNW1|22938|SNW domain containing 1##AK292274|SNW1|22938|SNW domain containing 1##NM_012245|SNW1|22938|SNW domain containing 1##AK293619|SNW1|22938|SNW domain containing 1##AK316087|SNW1|22938|SNW domain containing 1##NM_001105250|NRXN3|9369|neurexin 3##NM_138970|NRXN3|9369|neurexin 3##AK056530|NRXN3|9369|neurexin 3##BC059368|NRXN3|9369|neurexin 3##BC068469|NRXN3|9369|neurexin 3##BC136514|DIO2|1734|deiodinase, iodothyronine, type II##AB041843|DIO2|1734|deiodinase, iodothyronine, type II##BC074882|DIO2|1734|deiodinase, iodothyronine, type II##BC063118|DIO2|1734|deiodinase, iodothyronine, type II##NM_001007023|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242502|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242503|DIO2|1734|deiodinase, iodothyronine, type II##U53506|DIO2|1734|deiodinase, iodothyronine, type II##AF093774|DIO2|1734|deiodinase, iodothyronine, type II##NM_013989|DIO2|1734|deiodinase, iodothyronine, type II##AK292210|DIO2|1734|deiodinase, iodothyronine, type II##NM_000793|DIO2|1734|deiodinase, iodothyronine, type II	0.997025	0.094833	
chr9	116282739	116282890	reg1000326.p3	13.837	+	AF463495 NM_130795 AK096840 BC042555 CU692096 AF490840	-19033	+	TSC_hg19_v1_chr9_+_116226007 AK125059 NM_017790 AK074977	-56800	+	AK128127 NM_144488	-75804	+	TSC_hg19_v1_chr9_+_116327336 AK289666 AK301515 AK310705 NM_134427	44518	+	AF006609 NM_021106	60125	+	U27655 AK125094 TSC_hg19_v1_chr9_+_116343207	60374	+	AF463495|RGS3|5998|regulator of G-protein signaling 3##NM_130795|RGS3|5998|regulator of G-protein signaling 3##AK096840|RGS3|5998|regulator of G-protein signaling 3##BC042555|RGS3|5998|regulator of G-protein signaling 3##AF490840|RGS3|5998|regulator of G-protein signaling 3##AK125059|RGS3|5998|regulator of G-protein signaling 3##NM_017790|RGS3|5998|regulator of G-protein signaling 3##AK074977|RGS3|5998|regulator of G-protein signaling 3##AK128127|RGS3|5998|regulator of G-protein signaling 3##NM_144488|RGS3|5998|regulator of G-protein signaling 3##AK289666|RGS3|5998|regulator of G-protein signaling 3##AK301515|RGS3|5998|regulator of G-protein signaling 3##AK310705|RGS3|5998|regulator of G-protein signaling 3##NM_134427|RGS3|5998|regulator of G-protein signaling 3##AF006609|RGS3|5998|regulator of G-protein signaling 3##NM_021106|RGS3|5998|regulator of G-protein signaling 3##U27655|RGS3|5998|regulator of G-protein signaling 3##AK125094|RGS3|5998|regulator of G-protein signaling 3	0.996143	0.0	
chr8	127836775	127836905	reg1000658.p1	13.822	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-266116	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-266285	-	TSC_hg19_v1_chr8_-_126963395 BX648371	-873427	-	DQ486513 NM_001159542	591016	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	911485	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	911650	+	NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	1.64174	0.999025	CTCF.p2:-14:0.999	denovo_WM_7:21:0.509	denovo_WM_7:36:0.648
chr2	71558678	71558830	reg1000624.p1	13.820	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	-55028	+	TSC_hg19_v1_chr2_-_71454205 AB032981 NM_020459	-104524	-	TSC_hg19_v1_chr2_+_71357768 AK310931 BC041084 X98494	-200969	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	143	+	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	122047	+	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	135139	+	AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##AB032981|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_020459|PAIP2B|400961|poly(A) binding protein interacting protein 2B##AK310931|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC041084|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##X98494|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)	0.997066	0.0	denovo_WM_7:-11:0.985
chr2	202867771	202867938	reg1000540.p1	13.816	+	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	-196562	+	NM_001135745 NM_020919	-221960	-	TSC_hg19_v1_chr2_-_202645657 BC071576 AB053305 AB053306 AF391100 AK023024 BC029174 AK291029	-222189	-	AB017365 NM_003507 AB010881 BC015915 CU677505	31485	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	235414	-	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	262602	+	AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##NM_001135745|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##NM_020919|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC071576|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053305|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053306|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AF391100|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK023024|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC029174|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK291029|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)	1.995252	0.0	
chr11	19925163	19925299	reg1000685.p1	13.810	+	TSC_hg19_v1_chr11_+_19734821 AB037840 BC150290 NM_001244963 NM_145117 NM_182964 AB063116	-190365	+	AB063115 NM_001111018 AJ488205	-552916	+	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	-662030	-	TSC_hg19_v1_chr11_+_20044396 AK298346 AJ488208	119157	+	TSC_hg19_v1_chr11_+_20049136 AK307574	123901	+	AK290458 TSC_hg19_v1_chr11_+_20070637	145392	+	AB037840|NAV2|89797|neuron navigator 2##BC150290|NAV2|89797|neuron navigator 2##NM_001244963|NAV2|89797|neuron navigator 2##NM_145117|NAV2|89797|neuron navigator 2##NM_182964|NAV2|89797|neuron navigator 2##AB063116|NAV2|89797|neuron navigator 2##AB063115|NAV2|89797|neuron navigator 2##NM_001111018|NAV2|89797|neuron navigator 2##AJ488205|NAV2|89797|neuron navigator 2##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8##AK298346|NAV2|89797|neuron navigator 2##AJ488208|NAV2|89797|neuron navigator 2##AK307574|NAV2|89797|neuron navigator 2##AK290458|NAV2|89797|neuron navigator 2	0.996686	0.896642	denovo_WM_7:-23:0.532	denovo_WM_7:-24:0.206	denovo_WM_7:-26:0.205	CTCF.p2:31:0.897
chr5	118352252	118352377	reg1000366.p1	13.810	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	-28076	-	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-2441800	-	TSC_hg19_v1_chr5_+_115898220 D28352	-2454090	+	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	54497	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	54851	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	252144	+	BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8	0.999157	0.0	
chr22	38558212	38558367	reg1000519.p2	13.809	+	TSC_hg19_v1_chr22_-_38506676 AY358164 NM_025045	-51612	-	CU677367 TSC_hg19_v1_chr22_-_38506639 AK026235 BC015619	-51687	-	AF132610 NM_013356	-79131	-	CR456543 TSC_hg19_v1_chr22_-_38577838 AK291212 BC036742 AL080187 NM_001004426 NM_003560 AF064594 AK308308 BC051904 AK096521 AK290825 NM_001199562 AK300459	19504	-	NM_001161572 NM_001161574 NM_012323 TSC_hg19_v1_chr22_+_38597996 AK002001 BC067751 AK300932 AJ010857	39688	+	BC015037 TSC_hg19_v1_chr22_+_38598094 AB025247	39797	+	AY358164|BAIAP2L2|80115|BAI1-associated protein 2-like 2##NM_025045|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AK026235|BAIAP2L2|80115|BAI1-associated protein 2-like 2##BC015619|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AF132610|SLC16A8|23539|solute carrier family 16, member 8 (monocarboxylic acid transporter 3)##NM_013356|SLC16A8|23539|solute carrier family 16, member 8 (monocarboxylic acid transporter 3)##CR456543|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK291212|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC036742|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AL080187|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001004426|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_003560|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AF064594|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK308308|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC051904|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK096521|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK290825|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001199562|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK300459|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001161572|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_001161574|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_012323|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK002001|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC067751|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK300932|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AJ010857|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC015037|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AB025247|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)	1.98942	0.0	denovo_WM_7:-50:0.778	denovo_WM_7:-65:0.946
chr3	196659539	196659719	reg1000525.p1	13.805	+	TSC_hg19_v1_chr3_+_196594770 BC030705	-64859	+	TSC_hg19_v1_chr3_+_196594754 AK302305 NM_152699 AK313764	-64897	+	TSC_hg19_v1_chr3_+_196466844 AK291339	-192804	+	AK093216 AK297506 TSC_hg19_v1_chr3_-_196669320	9662	-	AB528874 BT006842 CU674628 TSC_hg19_v1_chr3_-_196669398 DQ890703 DQ893887 AY644767 BX647994 D59253 BC001255 X84157 AK296144 AK316601 BX537372 NM_001042540 NM_007362 AK308192	9791	-	TSC_hg19_v1_chr3_+_196669529 BC062368 AK123020	9881	+	BC030705|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK302305|SENP5|205564|SUMO1/sentrin specific peptidase 5##NM_152699|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK313764|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK291339|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2##AK093216|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK297506|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BT006842|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##DQ890703|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##DQ893887|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AY644767|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BX647994|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##D59253|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BC001255|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##X84157|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK296144|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK316601|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BX537372|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##NM_001042540|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##NM_007362|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK308192|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BC062368|LOC152217|152217|uncharacterized LOC152217##AK123020|LOC152217|152217|uncharacterized LOC152217	1.847865	0.0	denovo_WM_7:-6:0.812	denovo_WM_7:-21:0.802
chr2	156967531	156967680	reg1000416.p1	13.800	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1412416	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-2239161	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-2632354	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	219085	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	221558	-	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	324353	+	NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	2.963384	0.0	denovo_WM_7:14:0.958	denovo_WM_7:29:0.949
chr16	10423430	10423569	reg1000553.p1	13.798	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-146822	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-147311	-	BC143273 U09002 NM_001134408	-147666	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	56418	+	NM_024997 BC137079 BC144468	99241	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	250991	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	0.998866	0.0	
chr7	55972153	55972314	reg1000541.p2	13.797	+	TSC_hg19_v1_chr7_+_55955148 BC094796 BC048108	-17064	+	AK301928 NM_207366	-41771	-	TSC_hg19_v1_chr7_-_55640198 NM_030796	-332023	-	AK097282 NM_182633 AB464411	8115	+	TSC_hg19_v1_chr7_+_56019577 AK026553 BC047445 AF077035 NM_015969 BC054031	47348	+	TSC_hg19_v1_chr7_+_56032277 NM_001202469 NM_001483 AK097049 AK315648 BC030821 AF029786 BC000732 BC001837 AJ001259 AB528140 AM392838 BT007112 CR407612 CU674374 DQ892309 DQ895508	60184	+	BC094796|ZNF713|349075|zinc finger protein 713##AK301928|SEPT14|346288|septin 14##NM_207366|SEPT14|346288|septin 14##NM_030796|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK097282|ZNF713|349075|zinc finger protein 713##NM_182633|ZNF713|349075|zinc finger protein 713##AK026553|MRPS17|51373|mitochondrial ribosomal protein S17##BC047445|MRPS17|51373|mitochondrial ribosomal protein S17##AF077035|MRPS17|51373|mitochondrial ribosomal protein S17##NM_015969|MRPS17|51373|mitochondrial ribosomal protein S17##BC054031|MRPS17|51373|mitochondrial ribosomal protein S17##NM_001202469|GBAS|2631|glioblastoma amplified sequence##NM_001483|GBAS|2631|glioblastoma amplified sequence##AK097049|GBAS|2631|glioblastoma amplified sequence##AK315648|GBAS|2631|glioblastoma amplified sequence##BC030821|GBAS|2631|glioblastoma amplified sequence##AF029786|GBAS|2631|glioblastoma amplified sequence##BC000732|GBAS|2631|glioblastoma amplified sequence##BC001837|GBAS|2631|glioblastoma amplified sequence##AJ001259|GBAS|2631|glioblastoma amplified sequence##AM392838|GBAS|2631|glioblastoma amplified sequence##BT007112|GBAS|2631|glioblastoma amplified sequence##CR407612|GBAS|2631|glioblastoma amplified sequence##DQ892309|GBAS|2631|glioblastoma amplified sequence##DQ895508|GBAS|2631|glioblastoma amplified sequence	1.078381	0.0	
chr14	103651831	103651949	reg1000512.p1	13.792	+	M92357 NM_006291 BC128449 BC128450 TSC_hg19_v1_chr14_+_103592873	-59122	+	TSC_hg19_v1_chr14_+_103589771 BC017818	-62145	+	BC113655 BC117375 NM_001077594 HQ258590	-85372	+	NM_001969 TSC_hg19_v1_chr14_+_103800527	148620	+	TSC_hg19_v1_chr14_+_103800534 AL080102 AK026933	148650	+	TSC_hg19_v1_chr14_+_103800573 BC107884	148720	+	M92357|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_006291|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128449|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128450|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC017818|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC113655|EXOC3L4|91828|exocyst complex component 3-like 4##BC117375|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001077594|EXOC3L4|91828|exocyst complex component 3-like 4##HQ258590|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001969|EIF5|1983|eukaryotic translation initiation factor 5##AL080102|EIF5|1983|eukaryotic translation initiation factor 5##AK026933|EIF5|1983|eukaryotic translation initiation factor 5##BC107884|EIF5|1983|eukaryotic translation initiation factor 5	0.997755	0.0	denovo_WM_7:-28:0.418	denovo_WM_7:-29:0.418
chr20	17485575	17485710	reg1000315.p2	13.787	+	TSC_hg19_v1_chr20_+_17207684 BC005815 AK294200 AK312341 J05252 AB528512 DQ892675 DQ895917	-277827	+	BC001905 TSC_hg19_v1_chr20_+_17207673	-277971	+	NM_001201529 NM_002594 TSC_hg19_v1_chr20_+_17207617	-278032	+	AF039655 Y16717 TSC_hg19_v1_chr20_-_17512006 NM_001195	26350	-	AK316247 BC041483 NM_001161705	53900	-	NM_001011546 NM_006870 TSC_hg19_v1_chr20_+_17550756 AK315994 BC009477 AK312645 BX647319 S65738 AK302338	65097	+	BC005815|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##AK294200|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##AK312341|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##J05252|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##DQ892675|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##DQ895917|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##BC001905|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##NM_001201529|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##NM_002594|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##AF039655|BFSP1|631|beaded filament structural protein 1, filensin##Y16717|BFSP1|631|beaded filament structural protein 1, filensin##NM_001195|BFSP1|631|beaded filament structural protein 1, filensin##AK316247|BFSP1|631|beaded filament structural protein 1, filensin##BC041483|BFSP1|631|beaded filament structural protein 1, filensin##NM_001161705|BFSP1|631|beaded filament structural protein 1, filensin##NM_001011546|DSTN|11034|destrin (actin depolymerizing factor)##NM_006870|DSTN|11034|destrin (actin depolymerizing factor)##AK315994|DSTN|11034|destrin (actin depolymerizing factor)##BC009477|DSTN|11034|destrin (actin depolymerizing factor)##AK312645|DSTN|11034|destrin (actin depolymerizing factor)##BX647319|DSTN|11034|destrin (actin depolymerizing factor)##S65738|DSTN|11034|destrin (actin depolymerizing factor)##AK302338|DSTN|11034|destrin (actin depolymerizing factor)	2.845471	0.852807	CTCF.p2:1:0.853	denovo_WM_7:-45:0.523	denovo_WM_7:-46:0.457	denovo_WM_7:-66:0.807	denovo_WM_7:-82:0.482	denovo_WM_7:-83:0.489
chr6	8064642	8064772	reg1000565.p1	13.785	+	TSC_hg19_v1_chr6_-_8064644 AK301142 AF426434 NM_001199322 NM_001199323 NM_201280	-47	-	TSC_hg19_v1_chr6_-_8064623 BC052310 AK025442 BC032438 CR749569 BX647336 BC119645 BC119644	-106	-	TSC_hg19_v1_chr6_-_7911022 BC001199 AJ440721 AL833008 AY326464 AK075291 AK098089 AY358646 NM_030810	-153665	-	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	38083	-	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	371001	-	TSC_hg19_v1_chr6_+_8435870 BC040612	371181	+	AK301142|MUTED|63915|muted homolog (mouse)##AF426434|MUTED|63915|muted homolog (mouse)##NM_001199322|MUTED|63915|muted homolog (mouse)##NM_001199323|MUTED|63915|muted homolog (mouse)##NM_201280|MUTED|63915|muted homolog (mouse)##BC052310|MUTED-TXNDC5|100526836|MUTED-TXNDC5 readthrough (non-protein coding)##AK025442|MUTED|63915|muted homolog (mouse)##BC032438|MUTED|63915|muted homolog (mouse)##CR749569|MUTED|63915|muted homolog (mouse)##BX647336|MUTED|63915|muted homolog (mouse)##BC119645|MUTED|63915|muted homolog (mouse)##BC119644|MUTED|63915|muted homolog (mouse)##BC001199|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AJ440721|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AL833008|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AY326464|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AK075291|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AK098089|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AY358646|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##NM_030810|TXNDC5|81567|thioredoxin domain containing 5 (endoplasmic reticulum)##AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##BC040612|LOC100506207|100506207|uncharacterized LOC100506207	0.0	0.0	
chr12	25205304	25205484	reg1000224.p3	13.784	+	NM_001204126 NM_001204127 NM_006152	-214	+	BC035880 NM_001101339 BC046192 BC062789	-54982	-	TSC_hg19_v1_chr12_-_25102303 AK056255 NM_001178091 NM_001178092 NM_005504	-103058	-	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	186	+	BC028415 AK297998 AK302235 AK301763 AK093102 AX747924 BC031047 BC047415 BC057795 NM_001082972 NM_001082973 NM_001204101 NM_001204102 NM_018272 AK304602	142669	-	TSC_hg19_v1_chr12_+_25348156 AK057730 NM_001001660	142757	+	NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##AK056255|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178091|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178092|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_005504|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein##BC028415|CASC1|55259|cancer susceptibility candidate 1##AK297998|CASC1|55259|cancer susceptibility candidate 1##AK302235|CASC1|55259|cancer susceptibility candidate 1##AK301763|CASC1|55259|cancer susceptibility candidate 1##AK093102|CASC1|55259|cancer susceptibility candidate 1##BC031047|CASC1|55259|cancer susceptibility candidate 1##BC047415|CASC1|55259|cancer susceptibility candidate 1##BC057795|CASC1|55259|cancer susceptibility candidate 1##NM_001082972|CASC1|55259|cancer susceptibility candidate 1##NM_001082973|CASC1|55259|cancer susceptibility candidate 1##NM_001204101|CASC1|55259|cancer susceptibility candidate 1##NM_001204102|CASC1|55259|cancer susceptibility candidate 1##NM_018272|CASC1|55259|cancer susceptibility candidate 1##AK304602|CASC1|55259|cancer susceptibility candidate 1##AK057730|LYRM5|144363|LYR motif containing 5##NM_001001660|LYRM5|144363|LYR motif containing 5	0.988325	0.0	denovo_WM_7:-9:0.912
chr12	81206199	81206355	reg1000547.p2	13.783	+	TSC_hg19_v1_chr12_+_81110690 NM_005593 BC069373 X14894 AB528948 BT019399	-95512	+	NM_002469 AK313287 X52011 BC017834 AB587443 CU676084 DQ893248 DQ896577 CR407641 CR541763	-104825	+	NM_001145026	-368152	+	TSC_hg19_v1_chr12_-_81331470 AK309256	125190	-	TSC_hg19_v1_chr12_-_81331487 AB528898 CR407680 BC099921 AK315321 BC046926 BC062332 BC118609 BC122561 AF087693 AF173081 NM_004664	125313	-	TSC_hg19_v1_chr12_+_81471857 BC009317 BC015769 NM_024560 AK025616 AX764482	265581	+	NM_005593|MYF5|4617|myogenic factor 5##BC069373|MYF5|4617|myogenic factor 5##X14894|MYF5|4617|myogenic factor 5##BT019399|MYF5|4617|myogenic factor 5##NM_002469|MYF6|4618|myogenic factor 6 (herculin)##AK313287|MYF6|4618|myogenic factor 6 (herculin)##X52011|MYF6|4618|myogenic factor 6 (herculin)##BC017834|MYF6|4618|myogenic factor 6 (herculin)##DQ893248|MYF6|4618|myogenic factor 6 (herculin)##DQ896577|MYF6|4618|myogenic factor 6 (herculin)##CR407641|MYF6|4618|myogenic factor 6 (herculin)##CR541763|MYF6|4618|myogenic factor 6 (herculin)##NM_001145026|PTPRQ|374462|protein tyrosine phosphatase, receptor type, Q##AK309256|LIN7A|8825|lin-7 homolog A (C. elegans)##CR407680|LIN7A|8825|lin-7 homolog A (C. elegans)##BC099921|LIN7A|8825|lin-7 homolog A (C. elegans)##AK315321|LIN7A|8825|lin-7 homolog A (C. elegans)##BC046926|LIN7A|8825|lin-7 homolog A (C. elegans)##BC062332|LIN7A|8825|lin-7 homolog A (C. elegans)##BC118609|LIN7A|8825|lin-7 homolog A (C. elegans)##BC122561|LIN7A|8825|lin-7 homolog A (C. elegans)##AF087693|LIN7A|8825|lin-7 homolog A (C. elegans)##AF173081|LIN7A|8825|lin-7 homolog A (C. elegans)##NM_004664|LIN7A|8825|lin-7 homolog A (C. elegans)##BC009317|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##BC015769|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##NM_024560|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AK025616|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AX764482|ACSS3|79611|acyl-CoA synthetase short-chain family member 3	1.981265	0.0	denovo_WM_7:63:0.908
chr4	139163562	139163717	reg1000627.p1	13.769	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-275	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-709997	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-710047	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	773354	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	841764	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	841972	-	AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.989228	0.0	denovo_WM_7:8:0.922
chr16	11392827	11392974	reg1000587.p1	13.768	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-17758	-	BC042671 X07862 AK130957 AK131573 AK292447 AK307320 AK311798 BC005303 BC066338 NM_002762	-22580	-	NM_021247	-25449	-	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	46394	+	TSC_hg19_v1_chr16_+_11439315 BC013040	46418	+	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	287287	-	BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC042671|PRM2|5620|protamine 2##X07862|PRM2|5620|protamine 2##AK130957|PRM2|5620|protamine 2##AK131573|PRM2|5620|protamine 2##AK292447|PRM2|5620|protamine 2##AK311798|PRM2|5620|protamine 2##BC005303|PRM2|5620|protamine 2##BC066338|PRM2|5620|protamine 2##NM_002762|PRM2|5620|protamine 2##NM_021247|PRM3|58531|protamine 3##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor	0.99078	0.0	denovo_WM_7:-8:0.569
chr19	17480813	17480957	reg1000583.p1	13.763	+	NM_001128855 NM_032620 NM_133644 AF360742 AF360743 AY078987 AY078988 AK298485 AK027606 AK291929 BC019261 TSC_hg19_v1_chr19_+_17448396 BC017207 AK311442 AF360744 DQ892217 DQ895413 CU676414 CU677863	-32513	+	NM_001195422 AK297953	-35086	+	BC037307 TSC_hg19_v1_chr19_-_17445581 AB046843 NM_020959	-35249	-	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	7247	-	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	35534	-	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	35681	+	NM_001128855|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_032620|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_133644|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360742|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360743|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078987|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078988|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK298485|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK027606|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK291929|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC019261|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC017207|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK311442|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360744|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ892217|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ895413|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_001195422|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK297953|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC037307|ANO8|57719|anoctamin 8##AB046843|ANO8|57719|anoctamin 8##NM_020959|ANO8|57719|anoctamin 8##AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535	1.967968	0.0	denovo_WM_7:-51:0.945	denovo_WM_7:-66:0.818
chr16	1471083	1471263	reg1000502.p2	13.760	+	TSC_hg19_v1_chr16_-_1470746 BC073941 BC063715 BC023590 BC092497	-438	-	TSC_hg19_v1_chr16_-_1464697 AM944365 BC011924 AK124977 NM_001037125 NM_001193388	-6495	-	TSC_hg19_v1_chr16_-_1429645 BC000150 AK027013 NM_001193389 NM_023076	-41508	-	NM_001010878 AB463766	8171	-	NM_001143980	23316	-	CU680387 TSC_hg19_v1_chr16_+_1496635	25460	+	BC023590|C16orf91|283951|chromosome 16 open reading frame 91##BC092497|C16orf91|283951|chromosome 16 open reading frame 91##AM944365|UNKL|64718|unkempt homolog (Drosophila)-like##BC011924|UNKL|64718|unkempt homolog (Drosophila)-like##AK124977|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001037125|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001193388|UNKL|64718|unkempt homolog (Drosophila)-like##BC000150|UNKL|64718|unkempt homolog (Drosophila)-like##AK027013|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001193389|UNKL|64718|unkempt homolog (Drosophila)-like##NM_023076|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001010878|C16orf91|283951|chromosome 16 open reading frame 91##NM_001143980|CCDC154|645811|coiled-coil domain containing 154	0.995728	0.0	
chr22	17724437	17724585	reg1000593.p1	13.759	+	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-24148	-	AF190746 NM_017424	-33733	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-43997	-	TSC_hg19_v1_chr22_-_17747522 AF277398	23060	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	318708	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	386934	-	AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.99947	0.0	
chr10	104209471	104209651	reg1000610.p1	13.755	+	TSC_hg19_v1_chr10_-_104192372 NM_024040	-17174	-	TSC_hg19_v1_chr10_-_104192345 AK094695 BC000262	-17221	-	NM_024326 BC036120	-29982	+	BC126459 AK024342 NM_024886	1710	-	TSC_hg19_v1_chr10_+_104221151 AK296583	11589	+	TSC_hg19_v1_chr10_+_104221184 AK301612 AY358808 NM_024789	11621	+	NM_024040|CUEDC2|79004|CUE domain containing 2##BC000262|CUEDC2|79004|CUE domain containing 2##NM_024326|FBXL15|79176|F-box and leucine-rich repeat protein 15##BC036120|FBXL15|79176|F-box and leucine-rich repeat protein 15##BC126459|C10orf95|79946|chromosome 10 open reading frame 95##AK024342|C10orf95|79946|chromosome 10 open reading frame 95##NM_024886|C10orf95|79946|chromosome 10 open reading frame 95##AK296583|TMEM180|79847|transmembrane protein 180##AK301612|TMEM180|79847|transmembrane protein 180##AY358808|TMEM180|79847|transmembrane protein 180##NM_024789|TMEM180|79847|transmembrane protein 180	0.995799	0.0	
chr12	121738801	121738970	reg1000198.p1	13.754	+	AF287630 AF287631 NM_006549 NM_153499 NM_153500 NM_172214 NM_172215 NM_172216	-2775	-	TSC_hg19_v1_chr12_-_121735623 AK292072	-3290	-	TSC_hg19_v1_chr12_-_121734549 NM_172226	-4260	-	BC034243 TSC_hg19_v1_chr12_-_121785683	46782	-	TSC_hg19_v1_chr12_-_121790158 AF191339 CU674542 CU675341	51267	-	TSC_hg19_v1_chr12_-_121790212 BC001081 BC001950 BC006301 AK315451	51304	-	AF287630|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF287631|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_006549|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153499|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153500|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172214|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172215|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172216|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AK292072|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172226|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##BC034243|ANAPC5|51433|anaphase promoting complex subunit 5##AF191339|ANAPC5|51433|anaphase promoting complex subunit 5##BC001081|ANAPC5|51433|anaphase promoting complex subunit 5##BC001950|ANAPC5|51433|anaphase promoting complex subunit 5##BC006301|ANAPC5|51433|anaphase promoting complex subunit 5##AK315451|ANAPC5|51433|anaphase promoting complex subunit 5	3.78849	0.0	denovo_WM_7:42:0.313	denovo_WM_7:43:0.313	denovo_WM_7:44:0.313	denovo_WM_7:-82:0.310	denovo_WM_7:-83:0.310	denovo_WM_7:-84:0.310
chr11	94829305	94829485	reg1000513.p1	13.752	+	TSC_hg19_v1_chr11_+_94823009 AK291673 NM_015036 BC026191 AB020637 BC071171 AB385387	-6383	+	TSC_hg19_v1_chr11_+_94800406 AF031166	-28987	+	TSC_hg19_v1_chr11_+_94800329 BC057783 BC006181	-29051	+	BC017296 AK096300 NM_144665 TSC_hg19_v1_chr11_-_94964367	134909	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	693256	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	693338	-	AK291673|ENDOD1|23052|endonuclease domain containing 1##NM_015036|ENDOD1|23052|endonuclease domain containing 1##BC026191|ENDOD1|23052|endonuclease domain containing 1##AB020637|ENDOD1|23052|endonuclease domain containing 1##BC071171|ENDOD1|23052|endonuclease domain containing 1##AF031166|SRSF8|10929|serine/arginine-rich splicing factor 8##BC057783|SRSF8|10929|serine/arginine-rich splicing factor 8##BC017296|SESN3|143686|sestrin 3##AK096300|SESN3|143686|sestrin 3##NM_144665|SESN3|143686|sestrin 3##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B	0.993205	0.0	
chr18	46478565	46478650	reg1000358.p1	13.736	+	AF010193 NM_001190821 NM_005904	-1527	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-1840	-	AK301535 NM_001190822	-2905	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	508444	-	TSC_hg19_v1_chr18_-_47013575 AB097012	534958	-	TSC_hg19_v1_chr18_-_47013599 BC093004	534992	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.999404	0.0	denovo_WM_7:8:0.739
chr15	91367418	91367520	reg1000539.p1	13.734	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	-106855	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-294273	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-435930	+	NM_002569 X17094	44415	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	60232	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	60804	+	BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene	0.998148	0.0	denovo_WM_7:-19:0.951
chr5	138161089	138161232	reg1000737.p1	13.733	+	TSC_hg19_v1_chr5_+_138089137 AK094151 D13866 BC000385 AK304267	-72029	+	TSC_hg19_v1_chr5_+_138089107 NM_001903 AK296708 AK300439 D14705	-72066	+	NM_004134	-249843	-	AK309790 TSC_hg19_v1_chr5_-_138211025 AB007876 BC028172 AK291064 AK297332	49853	-	TSC_hg19_v1_chr5_-_138211057 NM_015564	49899	-	HQ589335 TSC_hg19_v1_chr5_+_138211097	49931	+	AK094151|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##D13866|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##BC000385|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK304267|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##NM_001903|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK296708|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK300439|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##D14705|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##NM_004134|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK309790|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AB007876|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##BC028172|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK291064|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK297332|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##NM_015564|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##HQ589335|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa	1.9829	0.993106	CTCF.p2:-5:0.993	denovo_WM_7:18:0.459	denovo_WM_7:19:0.459	denovo_WM_7:64:0.760
chr7	156715841	156715987	reg1000530.p1	13.731	+	TSC_hg19_v1_chr7_-_156685878 NM_022458	-29998	-	TSC_hg19_v1_chr7_-_156685868 AL834394 AB463099 AM392621 AM393143 AM393254 AM393828 CU676016 AF402318 BC017663 BC063649 AF107454 AK021727 AK291037 AK299753	-30167	-	TSC_hg19_v1_chr7_-_156468370 CU688401	-247492	-	TSC_hg19_v1_chr7_+_156742419 AY576779 NM_138400	26501	+	TSC_hg19_v1_chr7_+_156798463 AY927456 AY927462 AY927463 AY927458	82586	+	AY927459 AY927461 TSC_hg19_v1_chr7_-_156802024 AY927460 AY927464 NM_001165255	86140	-	NM_022458|LMBR1|64327|limb region 1 homolog (mouse)##AL834394|LMBR1|64327|limb region 1 homolog (mouse)##AM392621|LMBR1|64327|limb region 1 homolog (mouse)##AM393143|LMBR1|64327|limb region 1 homolog (mouse)##AM393254|LMBR1|64327|limb region 1 homolog (mouse)##AM393828|LMBR1|64327|limb region 1 homolog (mouse)##AF402318|LMBR1|64327|limb region 1 homolog (mouse)##BC017663|LMBR1|64327|limb region 1 homolog (mouse)##BC063649|LMBR1|64327|limb region 1 homolog (mouse)##AK021727|LMBR1|64327|limb region 1 homolog (mouse)##AK291037|LMBR1|64327|limb region 1 homolog (mouse)##AK299753|LMBR1|64327|limb region 1 homolog (mouse)##AY576779|NOM1|64434|nucleolar protein with MIF4G domain 1##NM_138400|NOM1|64434|nucleolar protein with MIF4G domain 1##AY927462|MNX1|3110|motor neuron and pancreas homeobox 1##AY927459|MNX1|3110|motor neuron and pancreas homeobox 1##AY927461|MNX1|3110|motor neuron and pancreas homeobox 1##AY927460|MNX1|3110|motor neuron and pancreas homeobox 1##AY927464|MNX1|3110|motor neuron and pancreas homeobox 1##NM_001165255|MNX1|3110|motor neuron and pancreas homeobox 1	0.997191	0.0	
chr5	138609586	138609762	reg1000581.p2	13.723	+	AK307872 NM_001194954 NM_199189 TSC_hg19_v1_chr5_+_138609537	-186	+	TSC_hg19_v1_chr5_-_138534058 AJ299442 AK074624 NM_001037633 NM_022464	-75628	-	TSC_hg19_v1_chr5_-_138533998 AY358950 BC011568	-75666	-	TSC_hg19_v1_chr5_+_138609789 BC036498 CR749625 AK293952 AJ224166 AJ224167 AJ224168 AJ224169 AJ224170	130	+	TSC_hg19_v1_chr5_+_138629336 NM_018834	19665	+	TSC_hg19_v1_chr5_+_138629428 BX537365 AK316420 CR749210 NM_001194955 NM_001194956 AK299399	19785	+	AK307872|MATR3|9782|matrin 3##NM_001194954|MATR3|9782|matrin 3##NM_199189|MATR3|9782|matrin 3##AJ299442|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK074624|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_001037633|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_022464|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AY358950|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##BC011568|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##BC036498|MATR3|9782|matrin 3##CR749625|MATR3|9782|matrin 3##AK293952|MATR3|9782|matrin 3##AJ224166|MATR3|9782|matrin 3##AJ224167|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224168|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224169|MATR3|9782|matrin 3##AJ224170|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##NM_018834|MATR3|9782|matrin 3##BX537365|MATR3|9782|matrin 3##AK316420|MATR3|9782|matrin 3##CR749210|MATR3|9782|matrin 3##NM_001194955|MATR3|9782|matrin 3##NM_001194956|MATR3|9782|matrin 3##AK299399|MATR3|9782|matrin 3	0.999365	0.0	denovo_WM_7:12:0.841
chr19	2710490	2710653	reg1000584.p2	13.720	+	TSC_hg19_v1_chr19_-_2702746 NM_052847	-7829	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	-7876	-	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-234333	+	AK124445 TSC_hg19_v1_chr19_-_2717420	6778	-	TSC_hg19_v1_chr19_-_2721362 BC030660 NM_145173	10803	-	TSC_hg19_v1_chr19_-_2740007 BC005869	29433	-	NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1##BC030660|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1##NM_145173|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1##BC005869|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3	0.998963	0.0	denovo_WM_7:-28:0.314	denovo_WM_7:-29:0.314	denovo_WM_7:-30:0.314
chr14	92724873	92724999	reg1000682.p1	13.713	+	TSC_hg19_v1_chr14_+_92588315 BC060854 AK001912 AK001627 BC070095	-136610	+	TSC_hg19_v1_chr14_+_92588292 NM_017437	-136644	+	TSC_hg19_v1_chr14_-_92588066 BC104672 AB463916 HQ258048 BC126232 BC126234 NM_004545	-136828	-	AF520706 NM_153648	63988	+	AK295059 NM_153647	64600	+	NM_153646 AF520704 AF520705 BC069653	65240	+	BC060854|CPSF2|53981|cleavage and polyadenylation specific factor 2, 100kDa##AK001912|CPSF2|53981|cleavage and polyadenylation specific factor 2, 100kDa##AK001627|CPSF2|53981|cleavage and polyadenylation specific factor 2, 100kDa##BC070095|CPSF2|53981|cleavage and polyadenylation specific factor 2, 100kDa##NM_017437|CPSF2|53981|cleavage and polyadenylation specific factor 2, 100kDa##BC104672|NDUFB1|4707|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa##HQ258048|NDUFB1|4707|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa##BC126232|NDUFB1|4707|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa##BC126234|NDUFB1|4707|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa##NM_004545|NDUFB1|4707|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa##AF520706|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153648|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	1.960532	0.0	denovo_WM_7:-52:0.682	denovo_WM_7:-54:0.216	denovo_WM_7:-70:0.543
chr16	71598950	71599120	reg1000606.p1	13.703	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-38942	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-75820	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-102847	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	11937	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	61062	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	149665	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	0.995634	0.0	denovo_WM_7:33:0.456	denovo_WM_7:34:0.456
chr17	49341894	49342058	reg1000620.p1	13.700	+	AF151806 TSC_hg19_v1_chr17_+_49337913 AK314399 BC025276 BC001535	-4051	+	TSC_hg19_v1_chr17_+_49337906 NM_016001	-4077	+	TSC_hg19_v1_chr17_+_49337888 AK026355	-4090	+	TSC_hg19_v1_chr17_-_50235676 AK294652 AK313001	893712	-	TSC_hg19_v1_chr17_-_50236075 BC047456 BC068462	894064	-	CR936674 TSC_hg19_v1_chr17_-_50236127 NM_020178	894162	-	AF151806|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK314399|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC025276|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC001535|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##NM_016001|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK026355|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK294652|CA10|56934|carbonic anhydrase X##AK313001|CA10|56934|carbonic anhydrase X##BC047456|CA10|56934|carbonic anhydrase X##BC068462|CA10|56934|carbonic anhydrase X##NM_020178|CA10|56934|carbonic anhydrase X	1.929966	0.0	denovo_WM_7:-13:0.494	denovo_WM_7:82:0.812
chr19	5773883	5774007	reg1000750.p1	13.691	+	AK128088 NM_152784 BC043005	-53249	+	TSC_hg19_v1_chr19_-_5720158 AK096626 NM_004793	-53778	-	TSC_hg19_v1_chr19_-_5720155 AK096433 AK127867 AK298531 AK309720	-53789	-	NM_001134316	10830	-	TSC_hg19_v1_chr19_-_5791173 AL365411 CU678764 EU832641 EU832718 AK023958 AK225840	17098	-	TSC_hg19_v1_chr19_-_5791185 BC009973	17240	-	AK128088|TMEM146|257062|transmembrane protein 146##NM_152784|TMEM146|257062|transmembrane protein 146##BC043005|TMEM146|257062|transmembrane protein 146##AK096626|LONP1|9361|lon peptidase 1, mitochondrial##NM_004793|LONP1|9361|lon peptidase 1, mitochondrial##AK096433|LONP1|9361|lon peptidase 1, mitochondrial##AK127867|LONP1|9361|lon peptidase 1, mitochondrial##AK298531|LONP1|9361|lon peptidase 1, mitochondrial##AK309720|LONP1|9361|lon peptidase 1, mitochondrial##NM_001134316|PRR22|163154|proline rich 22##AL365411|DUS3L|56931|dihydrouridine synthase 3-like (S. cerevisiae)##EU832641|DUS3L|56931|dihydrouridine synthase 3-like (S. cerevisiae)##EU832718|DUS3L|56931|dihydrouridine synthase 3-like (S. cerevisiae)##AK023958|DUS3L|56931|dihydrouridine synthase 3-like (S. cerevisiae)##AK225840|DUS3L|56931|dihydrouridine synthase 3-like (S. cerevisiae)##BC009973|DUS3L|56931|dihydrouridine synthase 3-like (S. cerevisiae)	0.998911	0.34254	CTCF.p2:4:0.343	denovo_WM_7:42:0.314	denovo_WM_7:43:0.314	denovo_WM_7:44:0.314
chr5	127418777	127418918	reg1000614.p3	13.688	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	-84	-	NM_001127385 AB219832 BC071790	-430122	+	NM_001048252 AB219764	-434124	+	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	512	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	626	+	TSC_hg19_v1_chr5_-_127873553 AK300440	454670	-	AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##AK300440|FBN2|2201|fibrillin 2	0.568169	0.0	denovo_WM_7:13:0.517
chr2	231025005	231025129	reg1000776.p1	13.681	+	BC065524 BC034382 AK055356 TSC_hg19_v1_chr2_-_230933641 NM_152527	-91401	-	TSC_hg19_v1_chr2_+_230787218 BC017869 BC022538 NM_174899 BC033935 AK289655 AK309702	-237850	+	TSC_hg19_v1_chr2_-_230786712 AK310971	-238318	-	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	59648	-	AK301097 NM_001185015	65376	-	AK301317 AK301267 NM_001005176 NM_007237 U36499 U36500 U63420 BC105744 BC105960 BC105743 BC054890 BC070160 BC038091	65396	+	BC065524|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC034382|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AK055356|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##NM_152527|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC017869|FBXO36|130888|F-box protein 36##BC022538|FBXO36|130888|F-box protein 36##NM_174899|FBXO36|130888|F-box protein 36##BC033935|FBXO36|130888|F-box protein 36##AK289655|FBXO36|130888|F-box protein 36##AK309702|FBXO36|130888|F-box protein 36##AK310971|TRIP12|9320|thyroid hormone receptor interactor 12##AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein##AK301317|SP140|11262|SP140 nuclear body protein##AK301267|SP140|11262|SP140 nuclear body protein##NM_001005176|SP140|11262|SP140 nuclear body protein##NM_007237|SP140|11262|SP140 nuclear body protein##U36499|SP140|11262|SP140 nuclear body protein##U36500|SP140|11262|SP140 nuclear body protein##U63420|SP140|11262|SP140 nuclear body protein##BC105744|SP140|11262|SP140 nuclear body protein##BC105960|SP140|11262|SP140 nuclear body protein##BC105743|SP140|11262|SP140 nuclear body protein##BC054890|SP140|11262|SP140 nuclear body protein##BC070160|SP140|11262|SP140 nuclear body protein##BC038091|SP140|11262|SP140 nuclear body protein	0.999346	0.998026	CTCF.p2:0:0.998
chr1	8227484	8227620	reg1000598.p1	13.680	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-141154	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-141191	-	AB528431 AJ276373 DQ892137 DQ895331 BC012839 TSC_hg19_v1_chr1_-_8075752	-151837	-	NM_001080397	156837	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	256465	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	650040	-	NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AJ276373|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ892137|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ895331|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC012839|ERRFI1|54206|ERBB receptor feedback inhibitor 1##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats	0.999398	0.0	denovo_WM_7:-4:0.739
chr3	58182298	58182412	reg1000482.p1	13.671	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	-188208	+	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	-439153	+	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	-503616	-	NM_004944	18042	-	TSC_hg19_v1_chr3_+_58223264 NM_020676 AK225942 AK172797 AK313168	40928	+	TSC_hg19_v1_chr3_+_58223518 AF225418 AK122983 BC001698	41175	+	AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##NM_004944|DNASE1L3|1776|deoxyribonuclease I-like 3##NM_020676|ABHD6|57406|abhydrolase domain containing 6##AK225942|ABHD6|57406|abhydrolase domain containing 6##AK172797|ABHD6|57406|abhydrolase domain containing 6##AK313168|ABHD6|57406|abhydrolase domain containing 6##AF225418|ABHD6|57406|abhydrolase domain containing 6##AK122983|ABHD6|57406|abhydrolase domain containing 6##BC001698|ABHD6|57406|abhydrolase domain containing 6	0.998907	0.0	
chr2	175357967	175358141	reg1000242.p2	13.669	+	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-6257	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-97496	+	TSC_hg19_v1_chr2_+_175260466 NM_001193528 NM_024583 AK296558 AK295357 AK295357 AK057912 AK057912 BC007344	-97577	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	104427	-	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	141243	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	189700	-	BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##NM_001193528|SCRN3|79634|secernin 3##NM_024583|SCRN3|79634|secernin 3##AK296558|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1	0.506798	0.0	denovo_WM_7:92:0.212
chr6	111266024	111266204	reg1000503.p1	13.668	+	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	-70092	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-129388	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-129600	-	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	13716	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	13844	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	37160	+	AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)	1.008148	0.0	denovo_WM_7:70:0.491	denovo_WM_7:73:0.357
chrX	70415877	70416057	reg1000562.p1	13.667	+	TSC_hg19_v1_chrX_+_70364730 BC051715	-51227	+	TSC_hg19_v1_chrX_+_70364710 AF217411 AX773948 AX773949	-51254	+	NM_001166660 NM_018977 NM_181303 BX641059 TSC_hg19_v1_chrX_+_70364698 BC028738 AK299669	-51278	+	TSC_hg19_v1_chrX_+_70435056 NM_001097642	19087	+	TSC_hg19_v1_chrX_+_70435092 BC039198 X04325	19128	+	NM_000166 BC022426 AK313474 BC002805	27133	+	BC051715|NLGN3|54413|neuroligin 3##AF217411|NLGN3|54413|neuroligin 3##NM_001166660|NLGN3|54413|neuroligin 3##NM_018977|NLGN3|54413|neuroligin 3##NM_181303|NLGN3|54413|neuroligin 3##BX641059|NLGN3|54413|neuroligin 3##BC028738|NLGN3|54413|neuroligin 3##AK299669|NLGN3|54413|neuroligin 3##NM_001097642|GJB1|2705|gap junction protein, beta 1, 32kDa##BC039198|GJB1|2705|gap junction protein, beta 1, 32kDa##X04325|GJB1|2705|gap junction protein, beta 1, 32kDa##NM_000166|GJB1|2705|gap junction protein, beta 1, 32kDa##BC022426|GJB1|2705|gap junction protein, beta 1, 32kDa##AK313474|GJB1|2705|gap junction protein, beta 1, 32kDa##BC002805|GJB1|2705|gap junction protein, beta 1, 32kDa	1.955242	0.0	denovo_WM_7:-20:0.211	denovo_WM_7:-22:0.430	denovo_WM_7:-36:0.384	denovo_WM_7:-37:0.221	denovo_WM_7:-38:0.322
chrX	123094327	123094430	reg1000064.p1	13.662	+	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	-100436	+	TSC_hg19_v1_chrX_-_122866897 NM_001081550	-227481	-	TSC_hg19_v1_chrX_-_122866885 AK001758	-227495	-	TSC_hg19_v1_chrX_+_123094397 NM_001042749 AK098737 BX640970 AK298633 AK313559	146	+	NM_001042750 NM_001042751 NM_006603 TSC_hg19_v1_chrX_+_123095573 AL831939 BX641002 CR749433 BX641003	1195	+	TSC_hg19_v1_chrX_+_123095638 BC001765	1259	+	AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis##NM_001081550|THOC2|57187|THO complex 2##AK001758|THOC2|57187|THO complex 2##NM_001042749|STAG2|10735|stromal antigen 2##AK098737|STAG2|10735|stromal antigen 2##BX640970|STAG2|10735|stromal antigen 2##AK298633|STAG2|10735|stromal antigen 2##AK313559|STAG2|10735|stromal antigen 2##NM_001042750|STAG2|10735|stromal antigen 2##NM_001042751|STAG2|10735|stromal antigen 2##NM_006603|STAG2|10735|stromal antigen 2##AL831939|STAG2|10735|stromal antigen 2##BX641002|STAG2|10735|stromal antigen 2##CR749433|STAG2|10735|stromal antigen 2##BX641003|STAG2|10735|stromal antigen 2##BC001765|STAG2|10735|stromal antigen 2	1.986463	0.259689	
chr22	42000131	42000267	reg1000556.p1	13.660	+	CU013144 CU013432 AB528210 AK316580 U62526 U86070 CR456544 BC010855 D87810 TSC_hg19_v1_chr22_-_41985841 AK289368 BC016818 NM_002676	-14359	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	-43130	+	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	-59699	-	AB528118 CU013008 CU013296 CR456458 BC093956 BC112179 BC171724 TSC_hg19_v1_chr22_-_42017031 AF038183	16737	-	TSC_hg19_v1_chr22_-_42017032 NM_015704	16868	-	TSC_hg19_v1_chr22_+_42017271 AK315618 NM_001469	17077	+	CU013144|PMM1|5372|phosphomannomutase 1##CU013432|PMM1|5372|phosphomannomutase 1##AK316580|PMM1|5372|phosphomannomutase 1##U62526|PMM1|5372|phosphomannomutase 1##U86070|PMM1|5372|phosphomannomutase 1##CR456544|PMM1|5372|phosphomannomutase 1##BC010855|PMM1|5372|phosphomannomutase 1##D87810|PMM1|5372|phosphomannomutase 1##AK289368|PMM1|5372|phosphomannomutase 1##BC016818|PMM1|5372|phosphomannomutase 1##NM_002676|PMM1|5372|phosphomannomutase 1##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456458|PPPDE2|27351|PPPDE peptidase domain containing 2##BC093956|PPPDE2|27351|PPPDE peptidase domain containing 2##BC112179|PPPDE2|27351|PPPDE peptidase domain containing 2##BC171724|PPPDE2|27351|PPPDE peptidase domain containing 2##AF038183|PPPDE2|27351|PPPDE peptidase domain containing 2##NM_015704|PPPDE2|27351|PPPDE peptidase domain containing 2##AK315618|XRCC6|2547|X-ray repair complementing defective repair in Chinese hamster cells 6##NM_001469|XRCC6|2547|X-ray repair complementing defective repair in Chinese hamster cells 6	0.999911	0.0	
chr1	16160891	16161016	reg1000460.p1	13.656	+	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-26761	-	NM_001024216 AB463637 DQ891730 DQ894907 AY180161	-69485	+	AF459643 NM_001024215 AK027444	-69942	+	BC012991 TSC_hg19_v1_chr1_-_16161389	381	-	TSC_hg19_v1_chr1_-_16162350 AK094772	1403	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	13426	+	NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##NM_001024216|FBLIM1|54751|filamin binding LIM protein 1##DQ891730|FBLIM1|54751|filamin binding LIM protein 1##DQ894907|FBLIM1|54751|filamin binding LIM protein 1##AY180161|FBLIM1|54751|filamin binding LIM protein 1##AF459643|FBLIM1|54751|filamin binding LIM protein 1##NM_001024215|FBLIM1|54751|filamin binding LIM protein 1##AK027444|FBLIM1|54751|filamin binding LIM protein 1##AK094772|FLJ37453|729614|uncharacterized LOC729614##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)	0.997401	0.0	denovo_WM_7:10:0.520
chr2	208526983	208527114	reg1000631.p1	13.654	+	TSC_hg19_v1_chr2_-_208490039 BC009462 AF455817	-36965	-	NM_001127395 TSC_hg19_v1_chr2_-_208489987	-37059	-	AK093812 AX748320 BC033720 NM_145280	-37353	-	TSC_hg19_v1_chr2_+_208576363 AK097751 NM_001142300 NM_152523	49253	+	TSC_hg19_v1_chr2_+_208576365 BC047293	49347	+	TSC_hg19_v1_chr2_+_208576466 BC067253	49452	+	BC009462|METTL21A|151194|methyltransferase like 21A##AF455817|METTL21A|151194|methyltransferase like 21A##NM_001127395|METTL21A|151194|methyltransferase like 21A##AK093812|METTL21A|151194|methyltransferase like 21A##BC033720|METTL21A|151194|methyltransferase like 21A##NM_145280|METTL21A|151194|methyltransferase like 21A##AK097751|CCNYL1|151195|cyclin Y-like 1##NM_001142300|CCNYL1|151195|cyclin Y-like 1##NM_152523|CCNYL1|151195|cyclin Y-like 1##BC047293|CCNYL1|151195|cyclin Y-like 1##BC067253|CCNYL1|151195|cyclin Y-like 1	0.99473	0.0	
chr14	52347645	52347796	reg1000536.p2	13.651	+	TSC_hg19_v1_chr14_+_52327416 BC020774	-20284	+	TSC_hg19_v1_chr14_+_52327387 AL832878	-20328	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	-20356	+	AF087877 AF100755 AF151857 DQ525179 NM_016039 TSC_hg19_v1_chr14_+_52456231 AK312004 BC001722	108534	+	TSC_hg19_v1_chr14_+_52456323 EU446806 AB463506 AY817175	108619	+	AJ223500 D86425 AB385187 CU690132 TSC_hg19_v1_chr14_-_52535721	188002	-	BC020774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AL832878|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AF087877|C14orf166|51637|chromosome 14 open reading frame 166##AF100755|C14orf166|51637|chromosome 14 open reading frame 166##AF151857|C14orf166|51637|chromosome 14 open reading frame 166##DQ525179|C14orf166|51637|chromosome 14 open reading frame 166##NM_016039|C14orf166|51637|chromosome 14 open reading frame 166##AK312004|C14orf166|51637|chromosome 14 open reading frame 166##BC001722|C14orf166|51637|chromosome 14 open reading frame 166##EU446806|C14orf166|51637|chromosome 14 open reading frame 166##AY817175|C14orf166|51637|chromosome 14 open reading frame 166##AJ223500|NID2|22795|nidogen 2 (osteonidogen)##D86425|NID2|22795|nidogen 2 (osteonidogen)	1.969752	0.0	denovo_WM_7:-20:0.587	denovo_WM_7:-21:0.308	denovo_WM_7:-35:0.282	denovo_WM_7:-36:0.555
chr16	29622393	29622525	reg1000608.p2	13.651	+	TSC_hg19_v1_chr16_-_29606667 AK316536	-15786	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-16114	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-151233	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	2583	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	51873	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	52106	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin	0.97752	0.0	
chr7	76237301	76237451	reg1000611.p1	13.650	+	TSC_hg19_v1_chr7_+_76178675 BC078169	-58701	+	TSC_hg19_v1_chr7_+_76178647 BC090058	-58744	+	NM_030570 NM_182684 AK290096 AY233462 BC004304 AK056760 CU678662	-97520	+	TSC_hg19_v1_chr7_-_76256148 BC017101	18827	-	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	19171	-	BC036053 NM_020879 BX649000 AK292491 HM370402	514570	+	BC078169|LOC100133091|100133091|uncharacterized LOC100133091##BC090058|LOC100133091|100133091|uncharacterized LOC100133091##NM_030570|UPK3B|80761|uroplakin 3B##NM_182684|UPK3B|80761|uroplakin 3B##AK290096|UPK3B|80761|uroplakin 3B##AY233462|UPK3B|80761|uroplakin 3B##BC004304|UPK3B|80761|uroplakin 3B##AK056760|UPK3B|80761|uroplakin 3B##BC017101|POMZP3|22932|POM121 and ZP3 fusion##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146	1.989905	0.0	denovo_WM_7:37:0.972	denovo_WM_7:52:0.982
chr15	55509867	55509998	reg1000437.p1	13.649	+	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	-20753	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	-20840	-	NM_001080534	-1204832	+	AF125393 NM_183234 U57094 U38654 NM_004580	52605	-	BC132800 BC136423 BC107680 NM_183236	53166	-	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	72059	-	BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family	1.993809	0.155634	denovo_WM_7:-45:0.492	denovo_WM_7:-46:0.328	denovo_WM_7:-61:0.331	denovo_WM_7:-62:0.495
chr1	155499755	155499935	reg1000527.p4	13.646	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-205553	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-205903	-	BC052277 NM_001105205	-206118	+	AF257305 TSC_hg19_v1_chr1_-_155532251	32361	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	32522	-	TSC_hg19_v1_chr1_-_155532562 AK307595	32736	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	1.8412	0.0	denovo_WM_7:-64:0.269	denovo_WM_7:-66:0.282	denovo_WM_7:-81:0.674
chr1	199521241	199521353	reg1000673.p1	13.644	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-614750	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-912967	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-913072	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	475572	+	AK316513 TSC_hg19_v1_chr1_+_200011716	490427	+	NM_001105517	661358	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	1.471089	0.967653	CTCF.p2:0:0.968	denovo_WM_7:31:0.359	denovo_WM_7:34:0.251	denovo_WM_7:104:0.463
chr19	51598131	51598258	reg1000578.p1	13.632	+	BC114614 NM_022046	-10711	-	AB108823 AB108824 AB451465 AB590885 AY923171 AY923172 AY923173 BC069334 BC069543 NM_015596 AL050220	-29849	-	AY358524 BC136341 BC143988 BC143990 BC143991 NM_019598 NM_145894 NM_145895	-60123	-	TSC_hg19_v1_chr19_-_51611637 AK291173 NM_145232	13447	-	NM_001198558 NM_014441 AF227924 AK297043 BC035365 AB026265 AY358913 AK315272 AF247180 DQ892476 DQ895688	30025	+	TSC_hg19_v1_chr19_+_51645559 NM_014385 NM_016543 AK314875 AF193441 BC028150 AJ007395 AF178981 AF170485 AJ130710 AJ130711 AJ130712 AJ130713	47397	+	BC114614|KLK14|43847|kallikrein-related peptidase 14##NM_022046|KLK14|43847|kallikrein-related peptidase 14##AB108823|KLK13|26085|kallikrein-related peptidase 13##AB108824|KLK13|26085|kallikrein-related peptidase 13##AB451465|KLK13|26085|kallikrein-related peptidase 13##AY923171|KLK13|26085|kallikrein-related peptidase 13##AY923172|KLK13|26085|kallikrein-related peptidase 13##AY923173|KLK13|26085|kallikrein-related peptidase 13##BC069334|KLK13|26085|kallikrein-related peptidase 13##BC069543|KLK13|26085|kallikrein-related peptidase 13##NM_015596|KLK13|26085|kallikrein-related peptidase 13##AL050220|KLK13|26085|kallikrein-related peptidase 13##AY358524|KLK12|43849|kallikrein-related peptidase 12##BC136341|KLK12|43849|kallikrein-related peptidase 12##BC143988|KLK12|43849|kallikrein-related peptidase 12##BC143990|KLK12|43849|kallikrein-related peptidase 12##BC143991|KLK12|43849|kallikrein-related peptidase 12##NM_019598|KLK12|43849|kallikrein-related peptidase 12##NM_145894|KLK12|43849|kallikrein-related peptidase 12##NM_145895|KLK12|43849|kallikrein-related peptidase 12##AK291173|CTU1|90353|cytosolic thiouridylase subunit 1 homolog (S. pombe)##NM_145232|CTU1|90353|cytosolic thiouridylase subunit 1 homolog (S. pombe)##NM_001198558|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##NM_014441|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##AF227924|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##AK297043|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##BC035365|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##AB026265|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##AY358913|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##AK315272|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##AF247180|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##DQ892476|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##DQ895688|SIGLEC9|27180|sialic acid binding Ig-like lectin 9##NM_014385|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##NM_016543|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AK314875|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AF193441|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##BC028150|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AJ007395|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AF178981|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AF170485|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AJ130710|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AJ130711|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AJ130712|SIGLEC7|27036|sialic acid binding Ig-like lectin 7##AJ130713|SIGLEC7|27036|sialic acid binding Ig-like lectin 7	1.932772	0.912564	CTCF.p2:-15:0.913	denovo_WM_7:31:0.622	denovo_WM_7:32:0.251	denovo_WM_7:46:0.577	denovo_WM_7:48:0.208
chr20	36621447	36621566	reg1000601.p1	13.626	+	TSC_hg19_v1_chr20_+_36531556 BC033818	-89949	+	NM_080607 AK056177 TSC_hg19_v1_chr20_+_36531528 AL834410	-89990	+	TSC_hg19_v1_chr20_+_36322503 AF370431 AK293420	-299023	+	BC013755 TSC_hg19_v1_chr20_-_36661845 BC013121 NM_014657 AK308164 BC107778	40337	-	TSC_hg19_v1_chr20_+_36661917 NM_021215 DQ372938	40455	+	TSC_hg19_v1_chr20_+_36662168 BC033629 AK312468 BC001696	40661	+	BC033818|VSTM2L|128434|V-set and transmembrane domain containing 2 like##NM_080607|VSTM2L|128434|V-set and transmembrane domain containing 2 like##AK056177|VSTM2L|128434|V-set and transmembrane domain containing 2 like##AL834410|VSTM2L|128434|V-set and transmembrane domain containing 2 like##AF370431|CTNNBL1|56259|catenin, beta like 1##AK293420|CTNNBL1|56259|catenin, beta like 1##BC013755|TTI1|9675|TELO2 interacting protein 1##BC013121|TTI1|9675|TELO2 interacting protein 1##NM_014657|TTI1|9675|TELO2 interacting protein 1##AK308164|TTI1|9675|TELO2 interacting protein 1##BC107778|TTI1|9675|TELO2 interacting protein 1##NM_021215|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##DQ372938|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##BC033629|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##AK312468|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##BC001696|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B	0.99903	0.954493	denovo_WM_7:16:0.314	denovo_WM_7:17:0.314	denovo_WM_7:18:0.314	CTCF.p2:49:0.954
chr2	41942889	41942999	reg1000507.p1	13.626	+	Y12878 Y12885 AK291696 BX537482 NM_001112802	-1203372	-	Y13032 BX648299 TSC_hg19_v1_chr2_-_40679231	-1263722	-	AF108388 AF108389 M96368 AF128524 NM_001112800 NM_001112801 NM_001252624 NM_021097	-1285513	-	AK124893 NM_001242815	237998	-	TSC_hg19_v1_chr2_+_42275160 NM_138370	332188	+	AB528999 TSC_hg19_v1_chr2_+_42275979	333017	+	Y12878|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y12885|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK291696|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX537482|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112802|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y13032|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX648299|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108388|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108389|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##M96368|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF128524|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112800|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112801|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001252624|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_021097|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)	0.998441	0.0	
chr4	87994364	87994544	reg1000623.p1	13.625	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-26203	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-66133	+	TSC_hg19_v1_chr4_+_87857481 L13743	-136971	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	147208	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	249571	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	317817	-	AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11	1.998641	0.0	denovo_WM_7:4:0.248	denovo_WM_7:5:0.310	denovo_WM_7:-12:0.259	denovo_WM_7:-13:0.321
chr16	19221749	19221929	reg1000580.p1	13.623	+	TSC_hg19_v1_chr16_+_19179561 NM_016524 BC004518 AF220560 AB527504 CU678742	-42088	+	TSC_hg19_v1_chr16_+_19125253 AK096327 NM_001034841	-96591	+	TSC_hg19_v1_chr16_+_19079232 AL136647 NM_001190983 BC043272	-142574	+	BC070101 NM_001105248 NM_001105249	200217	+	AY236494 NM_024780 BC038118 AK097718 BC027602 AK131202	245965	+	AY463154 BC014981 TSC_hg19_v1_chr16_-_19533421 AF306698 BC025273 BC001538 AF212862 BC012153 AK312912 NM_016641	311537	-	NM_016524|SYT17|51760|synaptotagmin XVII##BC004518|SYT17|51760|synaptotagmin XVII##AF220560|SYT17|51760|synaptotagmin XVII##AK096327|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##NM_001034841|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##AL136647|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_001190983|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC043272|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC070101|TMC5|79838|transmembrane channel-like 5##NM_001105248|TMC5|79838|transmembrane channel-like 5##NM_001105249|TMC5|79838|transmembrane channel-like 5##AY236494|TMC5|79838|transmembrane channel-like 5##NM_024780|TMC5|79838|transmembrane channel-like 5##BC038118|TMC5|79838|transmembrane channel-like 5##AK097718|TMC5|79838|transmembrane channel-like 5##BC027602|TMC5|79838|transmembrane channel-like 5##AK131202|TMC5|79838|transmembrane channel-like 5##AY463154|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC014981|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF306698|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC025273|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC001538|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF212862|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC012153|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AK312912|GDE1|51573|glycerophosphodiester phosphodiesterase 1##NM_016641|GDE1|51573|glycerophosphodiester phosphodiesterase 1	1.199499	0.0	denovo_WM_7:-19:0.874
chr19	14481416	14481557	reg1000566.p3	13.617	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-164438	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-220686	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-233495	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	10563	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	10769	+	TSC_hg19_v1_chr19_-_14529877 AK301847	48403	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	1.143533	0.0	
chr12	46378412	46378528	reg1000558.p2	13.616	+	AB463286 TSC_hg19_v1_chr12_-_46357972	-20510	-	TSC_hg19_v1_chr12_+_46123498 AB527360 AY727870 DQ096628 NM_152641 CR749833	-254873	+	TSC_hg19_v1_chr12_+_46123488 AK127872	-254987	+	BC017851 TSC_hg19_v1_chr12_-_46384277	5783	-	TSC_hg19_v1_chr12_-_46384319 AK302999	5855	-	AK096682 TSC_hg19_v1_chr12_-_46384348 AF030234	5877	-	AY727870|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##DQ096628|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##NM_152641|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##CR749833|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##BC017851|SCAF11|9169|SR-related CTD-associated factor 11##AK302999|SCAF11|9169|SR-related CTD-associated factor 11##AK096682|SCAF11|9169|SR-related CTD-associated factor 11##AF030234|SCAF11|9169|SR-related CTD-associated factor 11	1.041458	0.0	denovo_WM_7:16:0.313	denovo_WM_7:17:0.313	denovo_WM_7:18:0.313
chr3	16472911	16473067	reg1000704.p1	13.611	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-166281	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-166600	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-256795	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	82029	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	82235	-	BX648638 AK303026 NM_001190811	173281	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	0.999018	0.0	denovo_WM_7:24:0.256	denovo_WM_7:26:0.490
chr1	27136634	27136760	reg1000590.p1	13.609	+	AK000484 AK225521 AK301626 NM_001202554 AK056539	-22016	+	TSC_hg19_v1_chr1_+_27114455 NM_017837 BC013568	-22241	+	TSC_hg19_v1_chr1_+_27101218 AK074940 AK308363	-35409	+	TSC_hg19_v1_chr1_+_27153178 BC066776 NM_032283	16500	+	BC023552 AF029082 NM_006142 TSC_hg19_v1_chr1_+_27189639 BC001550 BC000329 BC002995 BC000995 AB464718 M93010 DQ894162 CU674492 CR541905 CR541926	52968	+	CU675813 AY364261 TSC_hg19_v1_chr1_-_27216757 BC007815 BC008634 BC020272	79978	-	AK000484|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK225521|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK301626|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_001202554|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK056539|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_017837|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##BC013568|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK074940|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK308363|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##BC066776|ZDHHC18|84243|zinc finger, DHHC-type containing 18##NM_032283|ZDHHC18|84243|zinc finger, DHHC-type containing 18##BC023552|SFN|2810|stratifin##AF029082|SFN|2810|stratifin##NM_006142|SFN|2810|stratifin##BC001550|SFN|2810|stratifin##BC000329|SFN|2810|stratifin##BC002995|SFN|2810|stratifin##BC000995|SFN|2810|stratifin##M93010|SFN|2810|stratifin##DQ894162|SFN|2810|stratifin##CR541905|SFN|2810|stratifin##CR541926|SFN|2810|stratifin##AY364261|GPN2|54707|GPN-loop GTPase 2##BC007815|GPN2|54707|GPN-loop GTPase 2##BC008634|GPN2|54707|GPN-loop GTPase 2##BC020272|GPN2|54707|GPN-loop GTPase 2	0.0	0.901971	CTCF.p2:21:0.902
chrX	1603556	1603736	reg1000485.p2	13.595	+	AK301844 NM_001173473	-30995	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-31845	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-92677	-	BC043610 GQ280263 NM_178129 AK126147	52392	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	106883	+	NM_004043 U11090	110701	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.680768	0.0	denovo_WM_7:-6:0.616	denovo_WM_7:-21:0.626
chrY	1553556	1553736	reg1000486.p2	13.595	+	AK301844 NM_001173473	-30995	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-31845	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-92677	-	BC043610 GQ280263 NM_178129 AK126147	52392	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	106883	+	NM_004043 U11090	110701	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.680768	0.0	denovo_WM_7:-6:0.616	denovo_WM_7:-21:0.626
chr18	11293768	11293927	reg1000629.p2	13.587	+	NM_022068	-145087	-	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-767750	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-767791	+	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	395365	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	457668	+	L10665 TSC_hg19_v1_chr18_+_11752245	458368	+	NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##L10665|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	0.997375	0.0	denovo_WM_7:-37:0.623
chr9	109289197	109289351	reg1000543.p1	13.581	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-832356	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-832421	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-864517	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	336090	+	TSC_hg19_v1_chr9_+_109686439 CR749850	397195	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	756258	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	2.349982	0.0	denovo_WM_7:20:0.335	denovo_WM_7:-26:0.572	denovo_WM_7:-27:0.223
chr12	103351598	103351754	reg1000647.p1	13.578	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-155	+	L47726 NM_000277 U49897	-40296	-	TSC_hg19_v1_chr12_-_103311062 BC026251	-40613	-	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	416	+	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	538070	-	AY311388 AJ295695 NM_017564 AB052958	629385	+	AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase##BC026251|PAH|5053|phenylalanine hydroxylase##DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2	0.859781	0.0	denovo_WM_7:15:0.273	denovo_WM_7:16:0.552
chr6	90539417	90539563	reg1000616.p2	13.569	+	TSC_hg19_v1_chr6_-_90529484 AK124025	-9984	-	TSC_hg19_v1_chr6_-_90529463 AF503925 NM_014611	-10045	-	EU831412 EU831505 TSC_hg19_v1_chr6_-_90348462 AL122090 BC104668 AK311948 BC009782 AK024783 NM_020466	-191027	-	TSC_hg19_v1_chr6_+_90539598 BC056685 NM_001137667 NM_001137668 NM_012115	104	+	BC012574 TSC_hg19_v1_chr6_+_90539629 BC027850 AF154415 BC029386 BC132828 BC132830	209	+	AB527151 AF296766 NM_032602	64696	+	AK124025|MDN1|23195|MDN1, midasin homolog (yeast)##AF503925|MDN1|23195|MDN1, midasin homolog (yeast)##NM_014611|MDN1|23195|MDN1, midasin homolog (yeast)##EU831412|LYRM2|57226|LYR motif containing 2##EU831505|LYRM2|57226|LYR motif containing 2##AL122090|LYRM2|57226|LYR motif containing 2##BC104668|LYRM2|57226|LYR motif containing 2##AK311948|LYRM2|57226|LYR motif containing 2##BC009782|LYRM2|57226|LYR motif containing 2##AK024783|LYRM2|57226|LYR motif containing 2##NM_020466|LYRM2|57226|LYR motif containing 2##BC056685|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137667|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137668|CASP8AP2|9994|caspase 8 associated protein 2##NM_012115|CASP8AP2|9994|caspase 8 associated protein 2##BC012574|CASP8AP2|9994|caspase 8 associated protein 2##BC027850|CASP8AP2|9994|caspase 8 associated protein 2##AF154415|CASP8AP2|9994|caspase 8 associated protein 2##BC029386|CASP8AP2|9994|caspase 8 associated protein 2##BC132828|CASP8AP2|9994|caspase 8 associated protein 2##BC132830|CASP8AP2|9994|caspase 8 associated protein 2##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa	0.778429	0.0	denovo_WM_7:-18:0.292	denovo_WM_7:-19:0.295
chr14	24801387	24801538	reg1000552.p1	13.565	+	NM_181657	-19150	+	TSC_hg19_v1_chr14_+_24780707 D89079 NM_001143919 U41070	-20768	+	TSC_hg19_v1_chr14_-_24780642 AK122828	-20813	-	BX248285 BC027943 AK122714 AK126468 NM_001198568 NM_001198592 NM_139247 TSC_hg19_v1_chr14_-_24804278	2803	-	AF156884 AY453693 AY494982 AY494983 CU692020 TSC_hg19_v1_chr14_-_24809197 BC062584 AK296309 BC041668 AK296140 AK075275 NM_006871	7677	-	AK310445 EU887632 EU887633 EU887634 NM_001136022 NM_001198967	34682	+	NM_181657|LTB4R|1241|leukotriene B4 receptor##D89079|LTB4R|1241|leukotriene B4 receptor##NM_001143919|LTB4R|1241|leukotriene B4 receptor##U41070|LTB4R|1241|leukotriene B4 receptor##AK122828|CIDEB|27141|cell death-inducing DFFA-like effector b##BX248285|ADCY4|196883|adenylate cyclase 4##BC027943|ADCY4|196883|adenylate cyclase 4##AK122714|ADCY4|196883|adenylate cyclase 4##AK126468|ADCY4|196883|adenylate cyclase 4##NM_001198568|ADCY4|196883|adenylate cyclase 4##NM_001198592|ADCY4|196883|adenylate cyclase 4##NM_139247|ADCY4|196883|adenylate cyclase 4##AF156884|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY453693|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494982|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494983|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC062584|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296309|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC041668|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296140|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK075275|RIPK3|11035|receptor-interacting serine-threonine kinase 3##NM_006871|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK310445|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887632|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887633|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887634|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001136022|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198967|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	0.998752	0.205204	denovo_WM_7:-8:0.307	denovo_WM_7:-9:0.307	denovo_WM_7:-10:0.307	CTCF.p2:85:0.205
chr20	31258742	31258889	reg1000635.p1	13.563	+	BC105014 BC105042 AK091025 AX746738 NM_182584	-19145	-	BC023657 BC065483 TSC_hg19_v1_chr20_-_31172902	-85892	-	BC038088 TSC_hg19_v1_chr20_-_31071385	-187424	-	AY542162 TSC_hg19_v1_chr20_-_31331262 BC000628 AK097059 AK027893	72438	-	BC047440 TSC_hg19_v1_chr20_-_31331396	72570	-	AK096307 BC022073 NM_001099339 NM_053041	72992	-	BC105014|C20orf203|284805|chromosome 20 open reading frame 203##BC105042|C20orf203|284805|chromosome 20 open reading frame 203##AK091025|C20orf203|284805|chromosome 20 open reading frame 203##NM_182584|C20orf203|284805|chromosome 20 open reading frame 203##BC023657|LOC284804|284804|uncharacterized LOC284804##BC065483|LOC284804|284804|uncharacterized LOC284804##BC038088|C20orf112|140688|chromosome 20 open reading frame 112##AY542162|COMMD7|149951|COMM domain containing 7##BC000628|COMMD7|149951|COMM domain containing 7##AK097059|COMMD7|149951|COMM domain containing 7##AK027893|COMMD7|149951|COMM domain containing 7##BC047440|COMMD7|149951|COMM domain containing 7##AK096307|COMMD7|149951|COMM domain containing 7##BC022073|COMMD7|149951|COMM domain containing 7##NM_001099339|COMMD7|149951|COMM domain containing 7##NM_053041|COMMD7|149951|COMM domain containing 7	0.987595	0.0	denovo_WM_7:7:0.451	denovo_WM_7:8:0.451
chrX	25739842	25739963	reg1000560.p1	13.562	+	NM_139058 TSC_hg19_v1_chrX_-_25034074	-705829	-	BC169334 TSC_hg19_v1_chrX_-_25031209	-708709	-	NM_016937 X06745 TSC_hg19_v1_chrX_+_24712066	-1027837	+	NM_173699 BC029525 AK057361	416584	+	AK097561 BC067286 NM_173523	470654	+	BC157859 NM_001136533	2025023	+	NM_139058|ARX|170302|aristaless related homeobox##BC169334|ARX|170302|aristaless related homeobox##NM_016937|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##X06745|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##NM_173699|MAGEB18|286514|melanoma antigen family B, 18##BC029525|MAGEB18|286514|melanoma antigen family B, 18##AK057361|MAGEB18|286514|melanoma antigen family B, 18##AK097561|MAGEB6|158809|melanoma antigen family B, 6##BC067286|MAGEB6|158809|melanoma antigen family B, 6##NM_173523|MAGEB6|158809|melanoma antigen family B, 6##BC157859|DCAF8L2|347442|DDB1 and CUL4 associated factor 8-like 2##NM_001136533|DCAF8L2|347442|DDB1 and CUL4 associated factor 8-like 2	0.989893	0.910567	CTCF.p2:-30:0.911
chr14	58539421	58539533	reg1000714.p1	13.561	+	NM_001206920	-206886	-	HQ258368 BC117405 BC143565 BC143566 BC143567 BC143568 AK307238 AK223127 AK001512 BC028060 NM_018168	-578974	-	TSC_hg19_v1_chr14_+_57857318 BC118589 BC122557	-682145	+	BC146861 BX161411 NM_001001872 AK292605 BX161448 TSC_hg19_v1_chr14_-_58618906	79379	-	TSC_hg19_v1_chr14_-_58618916 AK292513	79447	-	TSC_hg19_v1_chr14_+_58666880 NM_018477 AK000544 AF220190 AK222624 AK222702 BC005208 AK022534 AK315537 BC011997 DQ891294 DQ894478 AB529154 CU680156 BX248282	127407	+	NM_001206920|SLC35F4|341880|solute carrier family 35, member F4##HQ258368|C14orf105|55195|chromosome 14 open reading frame 105##BC117405|C14orf105|55195|chromosome 14 open reading frame 105##BC143565|C14orf105|55195|chromosome 14 open reading frame 105##BC143566|C14orf105|55195|chromosome 14 open reading frame 105##BC143567|C14orf105|55195|chromosome 14 open reading frame 105##BC143568|C14orf105|55195|chromosome 14 open reading frame 105##AK307238|C14orf105|55195|chromosome 14 open reading frame 105##AK223127|C14orf105|55195|chromosome 14 open reading frame 105##AK001512|C14orf105|55195|chromosome 14 open reading frame 105##BC028060|C14orf105|55195|chromosome 14 open reading frame 105##NM_018168|C14orf105|55195|chromosome 14 open reading frame 105##BC118589|NAA30|122830|N(alpha)-acetyltransferase 30, NatC catalytic subunit##BC122557|NAA30|122830|N(alpha)-acetyltransferase 30, NatC catalytic subunit##BC146861|C14orf37|145407|chromosome 14 open reading frame 37##BX161411|C14orf37|145407|chromosome 14 open reading frame 37##NM_001001872|C14orf37|145407|chromosome 14 open reading frame 37##AK292605|C14orf37|145407|chromosome 14 open reading frame 37##BX161448|C14orf37|145407|chromosome 14 open reading frame 37##AK292513|C14orf37|145407|chromosome 14 open reading frame 37##NM_018477|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##AK000544|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##AF220190|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##AK222624|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##AK222702|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##BC005208|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##AK022534|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##AK315537|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##BC011997|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##DQ891294|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##DQ894478|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)##BX248282|ACTR10|55860|actin-related protein 10 homolog (S. cerevisiae)	0.992136	0.0	denovo_WM_7:-30:0.258	denovo_WM_7:-31:0.735
chr2	202073688	202073850	reg1000574.p2	13.556	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	-25909	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	-26149	+	AF041459 NM_001202515	-68772	+	NM_001080124 NM_001228 NM_033355 NM_033358 AF422927 AF422928 BC010390 AK310630 BC017031 U60520 X98176	24456	+	NM_001080125 AF422926 BC068050 AF422925 AF422929 X98172 AY429525	49028	+	NM_033356 X98173	51487	+	AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AF041459|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202515|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001080124|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001228|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033355|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033358|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422927|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422928|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC010390|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310630|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC017031|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##U60520|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98176|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001080125|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422926|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC068050|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422929|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98172|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033356|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98173|CASP8|841|caspase 8, apoptosis-related cysteine peptidase	0.992001	0.0	denovo_WM_7:3:0.447	denovo_WM_7:4:0.447
chr4	71601806	71601934	reg1000665.p1	13.549	+	TSC_hg19_v1_chr4_+_71587713 NM_001037442 NM_014961 BC051716 BC053837 BC098433 AB020678 BC071988	-14150	+	BC030809 TSC_hg19_v1_chr4_-_71571018	-30872	-	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	-31051	+	AK094806 NM_001098477	103333	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	103707	-	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	103767	-	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3##NM_014961|RUFY3|22902|RUN and FYVE domain containing 3##BC051716|RUFY3|22902|RUN and FYVE domain containing 3##BC053837|RUFY3|22902|RUN and FYVE domain containing 3##BC098433|RUFY3|22902|RUN and FYVE domain containing 3##AB020678|RUFY3|22902|RUN and FYVE domain containing 3##BC071988|RUFY3|22902|RUN and FYVE domain containing 3##BC030809|LOC641510|641510|uncharacterized LOC641510##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1	1.027839	0.164606	denovo_WM_7:7:0.305	denovo_WM_7:8:0.305	denovo_WM_7:9:0.305
chr12	31789398	31789578	reg1000367.p1	13.545	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-45570	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-310349	-	TSC_hg19_v1_chr12_-_31479085 AF212220	-310387	-	AK290248 NM_001135864	10605	+	BC039535 NM_173802	22632	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	23126	+	BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20	1.042703	0.0	denovo_WM_7:49:0.974
chr12	31806128	31806276	reg1000741.p1	13.542	+	AK290248 NM_001135864	-6109	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-62284	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-327063	-	BC039535 NM_173802	5918	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	6412	+	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	75772	-	AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)	0.99773	0.945544	denovo_WM_7:-48:0.238	denovo_WM_7:-49:0.238	denovo_WM_7:-50:0.238	denovo_WM_7:-51:0.238	CTCF.p2:92:0.946
chr1	51972381	51972533	reg1000718.p1	13.539	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-84691	-	AF007170 NM_001144832	-161719	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-176225	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	12466	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	12567	-	NM_024586 NM_148906 NM_148908 NM_148909	110088	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.995964	0.0	denovo_WM_7:9:0.891
chr7	102081967	102082147	reg1000632.p1	13.537	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-8016	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-8080	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-45215	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	23176	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	23260	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	23351	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	3.103527	0.0	denovo_WM_7:-2:0.984	denovo_WM_7:-48:0.889	denovo_WM_7:-63:0.937
chr15	63828580	63828716	reg1000628.p1	13.533	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	-31771	+	TSC_hg19_v1_chr15_+_63796791 AK314223	-31866	+	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	-154573	-	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	60931	+	BC017581 BC036918 AK093077 TSC_hg19_v1_chr15_-_63893135	64394	-	TSC_hg19_v1_chr15_-_64126081 U50078	297436	-	AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##AK314223|USP3|9960|ubiquitin specific peptidase 3##AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC017581|LOC100130855|100130855|uncharacterized LOC100130855##BC036918|LOC100130855|100130855|uncharacterized LOC100130855##AK093077|LOC100130855|100130855|uncharacterized LOC100130855##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	0.995442	0.0	denovo_WM_7:11:0.494	denovo_WM_7:12:0.353
chr13	31309516	31309665	reg1000510.p1	13.523	+	AK314143 NM_001204406	-21976	+	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	-117627	+	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	-117963	-	NM_001629 TSC_hg19_v1_chr13_+_31309681	74	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	125	+	NM_032849 AK055635 TSC_hg19_v1_chr13_+_31480407 AL832478 BC040165 BC101624 BC101626 CU691826	170890	+	AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_032849|C13orf33|84935|chromosome 13 open reading frame 33##AK055635|C13orf33|84935|chromosome 13 open reading frame 33##BC040165|C13orf33|84935|chromosome 13 open reading frame 33##BC101624|C13orf33|84935|chromosome 13 open reading frame 33##BC101626|C13orf33|84935|chromosome 13 open reading frame 33	1.162023	0.0	
chr7	149296952	149297114	reg1000659.p1	13.515	+	TSC_hg19_v1_chr7_-_149194899 NM_001163474 NM_152557 AK128244	-102135	-	TSC_hg19_v1_chr7_-_149194830 AK291814	-102193	-	TSC_hg19_v1_chr7_-_149194795 BC068505 BC035586	-102248	-	AB590454 AK295771 TSC_hg19_v1_chr7_-_149321793 AK022762	24709	-	TSC_hg19_v1_chr7_-_149321856 BC047675	24821	-	TSC_hg19_v1_chr7_+_149412043 BC142722 BC146667 AB058765 BC150330 BC152409 NM_032534	115054	+	NM_001163474|ZNF746|155061|zinc finger protein 746##NM_152557|ZNF746|155061|zinc finger protein 746##AK128244|ZNF746|155061|zinc finger protein 746##AK291814|ZNF746|155061|zinc finger protein 746##BC068505|ZNF746|155061|zinc finger protein 746##BC035586|ZNF746|155061|zinc finger protein 746##AK295771|ZNF767|79970|zinc finger family member 767##AK022762|ZNF767|79970|zinc finger family member 767##BC047675|ZNF767|79970|zinc finger family member 767##BC142722|KRBA1|84626|KRAB-A domain containing 1##BC146667|KRBA1|84626|KRAB-A domain containing 1##AB058765|KRBA1|84626|KRAB-A domain containing 1##BC150330|KRBA1|84626|KRAB-A domain containing 1##BC152409|KRBA1|84626|KRAB-A domain containing 1##NM_032534|KRBA1|84626|KRAB-A domain containing 1	1.917648	0.0	denovo_WM_7:1:0.211	denovo_WM_7:-2:0.644
chr22	29999278	29999434	reg1000657.p2	13.510	+	AJ001258 NM_003634	-22031	-	BC002371 BC006473 TSC_hg19_v1_chr22_-_29977083 AK290953 AK098367 AK298816 NM_001202502 AK314407	-22261	-	NM_001002878 NM_001002879 BC003615 TSC_hg19_v1_chr22_-_29949699 AK025385 AB023200 AK225752 NM_001002877 NM_003678	-49659	-	NM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833 TSC_hg19_v1_chr22_+_29999554	195	+	TSC_hg19_v1_chr22_+_29999565 AF369657 AF369658 AF369659 AF369660	226	+	AK297116 TSC_hg19_v1_chr22_+_29999605	249	+	AJ001258|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_003634|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC002371|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC006473|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK290953|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK098367|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK298816|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001202502|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK314407|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001002878|THOC5|8563|THO complex 5##NM_001002879|THOC5|8563|THO complex 5##BC003615|THOC5|8563|THO complex 5##AK025385|THOC5|8563|THO complex 5##AB023200|THOC5|8563|THO complex 5##AK225752|THOC5|8563|THO complex 5##NM_001002877|THOC5|8563|THO complex 5##NM_003678|THOC5|8563|THO complex 5##NM_000268|NF2|4771|neurofibromin 2 (merlin)##NM_016418|NF2|4771|neurofibromin 2 (merlin)##NM_181825|NF2|4771|neurofibromin 2 (merlin)##NM_181828|NF2|4771|neurofibromin 2 (merlin)##NM_181829|NF2|4771|neurofibromin 2 (merlin)##NM_181830|NF2|4771|neurofibromin 2 (merlin)##NM_181831|NF2|4771|neurofibromin 2 (merlin)##NM_181832|NF2|4771|neurofibromin 2 (merlin)##NM_181833|NF2|4771|neurofibromin 2 (merlin)##AF369657|NF2|4771|neurofibromin 2 (merlin)##AF369658|NF2|4771|neurofibromin 2 (merlin)##AF369659|NF2|4771|neurofibromin 2 (merlin)##AF369660|NF2|4771|neurofibromin 2 (merlin)##AK297116|NF2|4771|neurofibromin 2 (merlin)	0.0	0.0	
chr20	11436336	11436490	reg1000609.p1	13.497	+	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	-781844	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	-782209	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-1020437	+	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	435036	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	462144	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	1553228	+	BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3	0.999583	0.0	
chr2	114451312	114451448	reg1000778.p1	13.496	+	TSC_hg19_v1_chr2_+_114384849 AK289496 AF095350 AF095351 BC126129 BC144050 BC144052	-66474	+	TSC_hg19_v1_chr2_+_114384811 BC111008 NM_007082 NM_013412	-66566	+	TSC_hg19_v1_chr2_-_114384648 BC000596 BC105600	-66732	-	AF529364 CU676258 TSC_hg19_v1_chr2_-_114514079 AY358620	62698	-	AK025657 AK315719 TSC_hg19_v1_chr2_-_114514220 BC050096 BC018537 NM_025181	62917	-	TSC_hg19_v1_chr2_+_114647549 BC044590 NM_005721 AF127773	196167	+	AK289496|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095350|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095351|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC126129|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144050|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144052|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC111008|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##NM_007082|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##NM_013412|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC000596|RPL23AP7|118433|ribosomal protein L23a pseudogene 7##BC105600|RPL23AP7|118433|ribosomal protein L23a pseudogene 7##AF529364|SLC35F5|80255|solute carrier family 35, member F5##AY358620|SLC35F5|80255|solute carrier family 35, member F5##AK025657|SLC35F5|80255|solute carrier family 35, member F5##AK315719|SLC35F5|80255|solute carrier family 35, member F5##BC050096|SLC35F5|80255|solute carrier family 35, member F5##BC018537|SLC35F5|80255|solute carrier family 35, member F5##NM_025181|SLC35F5|80255|solute carrier family 35, member F5##BC044590|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##NM_005721|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AF127773|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)	1.117791	0.0	denovo_WM_7:66:0.201
chr11	31418945	31419070	reg1000577.p1	13.481	+	TSC_hg19_v1_chr11_+_31391404 NM_181706 AK123087 AL833128 AK289665 BC036571 BC044931 BC063804	-27605	+	AY247970 AK126066 NM_181807	-27669	-	BX647348 NM_020869	-404775	-	AK311611 BC023595 TSC_hg19_v1_chr11_-_31531154 AK310496 AK057788 NM_144981	112137	-	AK000505 NM_019040 TSC_hg19_v1_chr11_+_31531319 AK304885 AL136677 DQ891468 DQ894651 BC012514 AB463022 AM393460 AM393857	112306	+	AK094249 TSC_hg19_v1_chr11_-_31825606	406593	-	NM_181706|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK123087|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AL833128|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK289665|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC036571|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC044931|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC063804|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AY247970|DCDC1|341019|doublecortin domain containing 1##NM_181807|DCDC1|341019|doublecortin domain containing 1##BX647348|DCDC5|100506627|doublecortin domain containing 5##NM_020869|DCDC5|100506627|doublecortin domain containing 5##AK311611|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC023595|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK310496|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK057788|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_144981|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK000505|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##NM_019040|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AK304885|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AL136677|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##DQ891468|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##DQ894651|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##BC012514|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AM393460|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AM393857|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AK094249|PAX6|5080|paired box 6	0.998483	0.020028	denovo_WM_7:24:0.477	denovo_WM_7:25:0.477
chr10	72335835	72335992	reg1000612.p1	13.479	+	TSC_hg19_v1_chr10_+_72238575 NM_014431 AB033100 BC136375 BC136376	-97298	+	TSC_hg19_v1_chr10_-_72201438 BC104976 NM_018055 BC112025	-134462	-	BC033585 TSC_hg19_v1_chr10_-_72201372	-134547	-	BC047695 TSC_hg19_v1_chr10_-_72362497 AK312754	26556	-	BC063043 TSC_hg19_v1_chr10_-_72362518 FJ555237 NM_001083116 NM_005041	26613	-	AB462932 AF358666 AJ345098 NM_080722 NM_139155	96644	+	NM_014431|KIAA1274|27143|KIAA1274##AB033100|KIAA1274|27143|KIAA1274##BC136375|KIAA1274|27143|KIAA1274##BC136376|KIAA1274|27143|KIAA1274##BC104976|NODAL|4838|nodal homolog (mouse)##NM_018055|NODAL|4838|nodal homolog (mouse)##BC112025|NODAL|4838|nodal homolog (mouse)##BC033585|NODAL|4838|nodal homolog (mouse)##BC047695|PRF1|5551|perforin 1 (pore forming protein)##AK312754|PRF1|5551|perforin 1 (pore forming protein)##BC063043|PRF1|5551|perforin 1 (pore forming protein)##FJ555237|PRF1|5551|perforin 1 (pore forming protein)##NM_001083116|PRF1|5551|perforin 1 (pore forming protein)##NM_005041|PRF1|5551|perforin 1 (pore forming protein)##AF358666|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##AJ345098|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_080722|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_139155|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14	0.997928	0.0	denovo_WM_7:-5:0.847
chr10	120327930	120328045	reg1000748.p1	13.476	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	-226163	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	-521557	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	-521943	-	AK313269 AK290461 NM_004248	27171	-	CU691560 TSC_hg19_v1_chr10_-_120514298	186300	-	TSC_hg19_v1_chr10_-_120514483 AJ544771 AK097728	186524	-	AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AK313269|PRLHR|2834|prolactin releasing hormone receptor##AK290461|PRLHR|2834|prolactin releasing hormone receptor##NM_004248|PRLHR|2834|prolactin releasing hormone receptor##AJ544771|C10orf46|143384|chromosome 10 open reading frame 46##AK097728|C10orf46|143384|chromosome 10 open reading frame 46	0.996033	0.753786	CTCF.p2:-2:0.754
chr3	18430704	18430841	reg1000840.p1	13.472	+	TSC_hg19_v1_chr3_-_17784106 NM_001134380	-646605	-	D86965 NM_014744	-648374	-	AK310539 NM_001134381	-689261	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	36025	-	BC001744 NM_001131010	49461	-	AK295633 AY053503 NM_144633 AB209053 AK309034	759232	+	NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8	1.007466	0.998523	CTCF.p2:32:0.999
chr5	160270453	160270618	reg1000546.p2	13.472	+	AK025130 TSC_hg19_v1_chr5_-_160112393	-158196	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-421632	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-421681	+	AB018258 AK295081 AK090832 AX746642 NM_025153	8596	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	704591	-	NM_000811	842122	+	AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6	0.76811	0.0	denovo_WM_7:-15:0.454	denovo_WM_7:-16:0.300
chr11	9268119	9268263	reg1000779.p1	13.466	+	TSC_hg19_v1_chr11_-_9225783 AK302478	-42370	-	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-155053	-	BC008835 TSC_hg19_v1_chr11_-_9025549 AK024750 AK098694 AK296484 NM_020645	-242628	-	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	18671	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	67868	-	TSC_hg19_v1_chr11_-_9336141 D26067	67947	-	AK302478|DENND5A|23258|DENN/MADD domain containing 5A##BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##BC008835|NRIP3|56675|nuclear receptor interacting protein 3##AK024750|NRIP3|56675|nuclear receptor interacting protein 3##AK098694|NRIP3|56675|nuclear receptor interacting protein 3##AK296484|NRIP3|56675|nuclear receptor interacting protein 3##NM_020645|NRIP3|56675|nuclear receptor interacting protein 3##AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B##D26067|TMEM41B|440026|transmembrane protein 41B	0.998449	0.0	
chr7	28429166	28429299	reg1000599.p1	13.462	+	L05913 NM_182899	-90293	+	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	-208826	-	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	-209031	-	TSC_hg19_v1_chr7_+_28448986 BC087859	19756	+	L05515 NM_182898	22911	+	L05911 NM_004904	46001	+	L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##BC087859|LOC401317|401317|uncharacterized LOC401317##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5	0.99951	0.939839	CTCF.p2:-14:0.940	denovo_WM_7:26:0.425	denovo_WM_7:27:0.425
chr12	8810081	8810194	reg1000496.p1	13.459	+	AB040431 BC006296 NM_020661	-44698	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-116663	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-143906	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	5159	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	5264	-	AK124368 TSC_hg19_v1_chr12_-_8815486	5345	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	0.999494	0.724552	CTCF.p2:-6:0.725
chr2	220082611	220082732	reg1000438.p2	13.458	+	TSC_hg19_v1_chr2_+_220071949 AK074571	-10717	+	TSC_hg19_v1_chr2_+_220071528 AK091345 AX746924 AK292622 AK293714 BC018415 NM_138802	-11097	+	TSC_hg19_v1_chr2_+_220043005 BC002420	-39607	+	AF076775 DQ891876 DQ895063 CU674272 TSC_hg19_v1_chr2_-_220083433	743	-	AK057026 BC000559 AJ289233 AK303230 TSC_hg19_v1_chr2_-_220083681	1003	-	TSC_hg19_v1_chr2_-_220083702 NM_005689	1034	-	AK074571|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK091345|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK292622|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK293714|ZFAND2B|130617|zinc finger, AN1-type domain 2B##BC018415|ZFAND2B|130617|zinc finger, AN1-type domain 2B##NM_138802|ZFAND2B|130617|zinc finger, AN1-type domain 2B##BC002420|FAM134A|79137|family with sequence similarity 134, member A##AF076775|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##DQ891876|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##DQ895063|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AK057026|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##BC000559|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AJ289233|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AK303230|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##NM_005689|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6	0.999578	0.0	denovo_WM_7:-20:0.425	denovo_WM_7:-21:0.425
chr19	2391297	2391453	reg1000304.p1	13.457	+	AB109390 AB527446 AJ488946 AJ488947 NM_182973	-1600	+	TSC_hg19_v1_chr19_+_2328689 AJ345027 BC001788 BC028391	-62685	+	AB040965 AJ420897 TSC_hg19_v1_chr19_+_2328682 AY169315 AK308973	-62695	+	AF152352 DQ891755 DQ894937 TSC_hg19_v1_chr19_-_2427552 AK024764 AF144700 BC008607	36178	-	NM_012458 TSC_hg19_v1_chr19_-_2427893	36521	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	65515	-	AB109390|TMPRSS9|360200|transmembrane protease, serine 9##AJ488946|TMPRSS9|360200|transmembrane protease, serine 9##AJ488947|TMPRSS9|360200|transmembrane protease, serine 9##NM_182973|TMPRSS9|360200|transmembrane protease, serine 9##AJ345027|SPPL2B|56928|signal peptide peptidase-like 2B##BC001788|SPPL2B|56928|signal peptide peptidase-like 2B##BC028391|SPPL2B|56928|signal peptide peptidase-like 2B##AB040965|SPPL2B|56928|signal peptide peptidase-like 2B##AJ420897|SPPL2B|56928|signal peptide peptidase-like 2B##AY169315|SPPL2B|56928|signal peptide peptidase-like 2B##AF152352|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ891755|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ894937|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AK024764|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AF144700|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BC008607|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##NM_012458|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2	1.018443	0.138598	denovo_WM_7:-5:0.641
chr6	22194546	22194695	reg1000791.p1	13.456	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-527961	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-600248	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1659897	+	BC015850 NM_000948	103109	-	X54394 X54393 GQ305133 M58594 NM_001163558	108427	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	375105	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	0.997892	0.0	denovo_WM_7:1:0.817
chr9	112665981	112666124	reg1000720.p1	13.449	+	TSC_hg19_v1_chr9_+_112542500 AB023137 NM_007203 NM_053016 NM_147150 AJ303079 AJ312216 AJ312217 BC140818	-123437	+	BC039306 NM_001037293 AK095003	-262983	+	TSC_hg19_v1_chr9_-_112260588 BC063287 AK295875 AK304434 AK316066 NM_001145368 NM_002829	-405463	-	BC146863 BC171800 NM_001004065 NM_001198656 TSC_hg19_v1_chr9_+_112810942	144857	+	TSC_hg19_v1_chr9_+_112810975 AK057098 AK304311	144911	+	NM_001136562 AK300427	221740	+	AB023137|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##NM_007203|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##NM_053016|PALM2|114299|paralemmin 2##NM_147150|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##AJ303079|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##AJ312216|PALM2|114299|paralemmin 2##AJ312217|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##BC140818|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##BC039306|PALM2|114299|paralemmin 2##NM_001037293|PALM2|114299|paralemmin 2##AK095003|PALM2|114299|paralemmin 2##BC063287|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK295875|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK304434|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316066|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145368|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_002829|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BC146863|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC171800|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001004065|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001198656|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK057098|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK304311|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001136562|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK300427|AKAP2|11217|A kinase (PRKA) anchor protein 2	0.993008	0.586956	denovo_WM_7:28:0.314	denovo_WM_7:29:0.314	denovo_WM_7:30:0.314	CTCF.p2:-41:0.587
chr8	144129774	144129902	reg1000499.p1	13.446	+	TSC_hg19_v1_chr8_+_144120683 BC073830 AK094450 NM_173687 BC120993 BC063497	-9163	+	TSC_hg19_v1_chr8_+_144102304 BC119708 BC119709 AB529045 U56145	-27511	+	TSC_hg19_v1_chr8_+_144099945 NM_001127213 NM_002346 AK223074 AK129615 AK311983 BC003392 U42376 Z68179	-29896	+	NM_002347	111618	-	BC030192 AB012293 TSC_hg19_v1_chr8_-_144241700	111851	-	BC053355 TSC_hg19_v1_chr8_-_144241739 BC028894 NM_001135655	111901	-	BC073830|C8orf31|286122|chromosome 8 open reading frame 31##AK094450|C8orf31|286122|chromosome 8 open reading frame 31##NM_173687|C8orf31|286122|chromosome 8 open reading frame 31##BC120993|C8orf31|286122|chromosome 8 open reading frame 31##BC063497|C8orf31|286122|chromosome 8 open reading frame 31##BC119708|LY6E|4061|lymphocyte antigen 6 complex, locus E##BC119709|LY6E|4061|lymphocyte antigen 6 complex, locus E##U56145|LY6E|4061|lymphocyte antigen 6 complex, locus E##NM_001127213|LY6E|4061|lymphocyte antigen 6 complex, locus E##NM_002346|LY6E|4061|lymphocyte antigen 6 complex, locus E##AK223074|LY6E|4061|lymphocyte antigen 6 complex, locus E##AK129615|LY6E|4061|lymphocyte antigen 6 complex, locus E##AK311983|LY6E|4061|lymphocyte antigen 6 complex, locus E##BC003392|LY6E|4061|lymphocyte antigen 6 complex, locus E##U42376|LY6E|4061|lymphocyte antigen 6 complex, locus E##Z68179|LY6E|4061|lymphocyte antigen 6 complex, locus E##NM_002347|LY6H|4062|lymphocyte antigen 6 complex, locus H##BC030192|LY6H|4062|lymphocyte antigen 6 complex, locus H##AB012293|LY6H|4062|lymphocyte antigen 6 complex, locus H##BC053355|LY6H|4062|lymphocyte antigen 6 complex, locus H##BC028894|LY6H|4062|lymphocyte antigen 6 complex, locus H##NM_001135655|LY6H|4062|lymphocyte antigen 6 complex, locus H	0.984587	0.985694	CTCF.p2:-4:0.986
chr6	137555752	137555896	reg1000686.p1	13.436	+	TSC_hg19_v1_chr6_-_137540556 NM_000416	-15266	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-15279	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	-15312	-	BC051352 AK096362 NM_175747	259701	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	632713	+	TSC_hg19_v1_chr6_-_138189314 AK124173	633526	-	NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3	0.973542	0.0	denovo_WM_7:21:0.650	denovo_WM_7:22:0.263
chr8	121881032	121881187	reg1000709.p1	13.435	+	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-56603	-	BC098573 TSC_hg19_v1_chr8_-_121824269	-56839	-	TSC_hg19_v1_chr8_-_121824090 AB590740	-57046	-	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	772517	-	TSC_hg19_v1_chr8_+_123793897 NM_014943	1912802	+	BC042145 TSC_hg19_v1_chr8_+_123794000	1912885	+	NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC098573|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2	0.988632	0.0	denovo_WM_7:13:0.938
chr2	203531248	203531406	reg1000324.p1	13.420	+	AB053315 TSC_hg19_v1_chr2_+_203500263	-31090	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	-31468	+	TSC_hg19_v1_chr2_+_203499703 AK096090	-31638	+	AK055978 AB053316 TSC_hg19_v1_chr2_-_203736166	204751	-	TSC_hg19_v1_chr2_-_203736185 NM_178231	204862	-	TSC_hg19_v1_chr2_-_203736227 AL833904 BC063876 NM_138468	204969	-	AB053315|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B##AK096090|FAM117B|150864|family with sequence similarity 117, member B##AK055978|ICA1L|130026|islet cell autoantigen 1,69kDa-like##AB053316|ICA1L|130026|islet cell autoantigen 1,69kDa-like##NM_178231|ICA1L|130026|islet cell autoantigen 1,69kDa-like##AL833904|ICA1L|130026|islet cell autoantigen 1,69kDa-like##BC063876|ICA1L|130026|islet cell autoantigen 1,69kDa-like##NM_138468|ICA1L|130026|islet cell autoantigen 1,69kDa-like	0.989576	0.0	denovo_WM_7:72:0.236	denovo_WM_7:73:0.236	denovo_WM_7:74:0.236	denovo_WM_7:75:0.236
chr1	32575057	32575166	reg1000762.p1	13.415	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	-1464	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	-36537	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	-36607	+	TSC_hg19_v1_chr1_+_32645315 AL832636 AL832338	70176	+	TSC_hg19_v1_chr1_+_32645343 AK096939 NM_175852	70230	+	TSC_hg19_v1_chr1_+_32645661 AL832637	70545	+	NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL832636|TXLNA|200081|taxilin alpha##AL832338|TXLNA|200081|taxilin alpha##AK096939|TXLNA|200081|taxilin alpha##NM_175852|TXLNA|200081|taxilin alpha##AL832637|TXLNA|200081|taxilin alpha	1.198107	0.016081	denovo_WM_7:-18:0.454	denovo_WM_7:-19:0.248	denovo_WM_7:-20:0.258
chr10	74855238	74855396	reg1000514.p2	13.410	+	AK311349 TSC_hg19_v1_chr10_-_74714574	-140745	-	AF349540 BC093996 BC111946 BC143532 AY358032 NM_032562 AF339053 AK313712 TSC_hg19_v1_chr10_-_74714543	-140806	-	AK096435 NM_152635 BC126440 AY358339 AY013707 TSC_hg19_v1_chr10_+_74653529	-201884	+	TSC_hg19_v1_chr10_-_74856621 M24486 M24487 AK312593 AK222960 BC034998	1288	-	TSC_hg19_v1_chr10_-_74856725 NM_000917 NM_001017962 NM_001142595 NM_001142596	1453	-	NM_015901 BC031224 AK303235 TSC_hg19_v1_chr10_+_74870272 AK300980 AK309755 AK316538 BC046173 BC038833	14934	+	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB##AF349540|PLA2G12B|84647|phospholipase A2, group XIIB##BC093996|PLA2G12B|84647|phospholipase A2, group XIIB##BC111946|PLA2G12B|84647|phospholipase A2, group XIIB##BC143532|PLA2G12B|84647|phospholipase A2, group XIIB##AY358032|PLA2G12B|84647|phospholipase A2, group XIIB##NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB##AF339053|PLA2G12B|84647|phospholipase A2, group XIIB##AK313712|PLA2G12B|84647|phospholipase A2, group XIIB##AK096435|OIT3|170392|oncoprotein induced transcript 3##NM_152635|OIT3|170392|oncoprotein induced transcript 3##BC126440|OIT3|170392|oncoprotein induced transcript 3##AY358339|OIT3|170392|oncoprotein induced transcript 3##AY013707|OIT3|170392|oncoprotein induced transcript 3##M24486|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##M24487|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK312593|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK222960|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##BC034998|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_000917|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001017962|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142595|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142596|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_015901|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC031224|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK303235|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK300980|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK309755|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK316538|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC046173|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC038833|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13	0.991649	0.0	denovo_WM_7:-25:0.228	denovo_WM_7:-26:0.228	denovo_WM_7:-27:0.228	denovo_WM_7:-28:0.228
chr1	226927063	226927243	reg1000520.p1	13.401	+	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	-215	-	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	-190536	+	AL137507 NM_001003665 TSC_hg19_v1_chr1_+_226736500	-190652	+	TSC_hg19_v1_chr1_+_227058316 NM_000447 NM_012486 AK292299 AK301143	131127	+	NM_020247 TSC_hg19_v1_chr1_+_227127955	200793	+	TSC_hg19_v1_chr1_+_227127991 BX648860 BC005171	200822	+	BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B##AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##AL137507|C1orf95|375057|chromosome 1 open reading frame 95##NM_001003665|C1orf95|375057|chromosome 1 open reading frame 95##NM_000447|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_012486|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK292299|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK301143|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_020247|ADCK3|56997|aarF domain containing kinase 3##BX648860|ADCK3|56997|aarF domain containing kinase 3##BC005171|ADCK3|56997|aarF domain containing kinase 3	1.004636	0.0	denovo_WM_7:40:0.551	denovo_WM_7:41:0.214
chr12	31556204	31556338	reg1000654.p1	13.396	+	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-77132	-	TSC_hg19_v1_chr12_-_31479085 AF212220	-77170	-	BC071966 TSC_hg19_v1_chr12_-_31479052 BC004462 AK027736 AF087885 AK026932 AL157432	-77213	-	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	187647	-	AK290248 NM_001135864	243822	+	BC039535 NM_173802	255849	+	BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A##BC071966|FAM60A|58516|family with sequence similarity 60, member A##BC004462|FAM60A|58516|family with sequence similarity 60, member A##AF087885|FAM60A|58516|family with sequence similarity 60, member A##AK026932|FAM60A|58516|family with sequence similarity 60, member A##AL157432|FAM60A|58516|family with sequence similarity 60, member A##BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20	0.99479	0.667419	CTCF.p2:-33:0.667	denovo_WM_7:56:0.699
chr15	52375044	52375188	reg1000914.p2	13.385	+	TSC_hg19_v1_chr15_+_52311442 BC035492	-63655	+	TSC_hg19_v1_chr15_+_52311432 CR749401	-63682	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	-63697	+	AF285092 AB587584 TSC_hg19_v1_chr15_-_52404936 BC093826 BC093828 BC143227 BC104442 BC104443 AF326964 NM_020396	29830	-	AB528747 AF501885 AM393025 TSC_hg19_v1_chr15_-_52472123 AL117471 BC011671 AK314775 BC013997 AF017656 NM_006578 AK290330	97025	-	TSC_hg19_v1_chr15_+_52472257 AF007131	97219	+	BC035492|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##AF285092|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093826|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093828|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104442|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104443|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF326964|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##NM_020396|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF501885|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AM393025|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AL117471|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC011671|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK314775|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC013997|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF017656|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##NM_006578|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK290330|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973	0.996962	0.0	denovo_WM_7:28:0.313	denovo_WM_7:29:0.313	denovo_WM_7:30:0.313
chr2	180990362	180990472	reg1000409.p2	13.384	+	BC031216 NM_020943 TSC_hg19_v1_chr2_-_180871834 AK025635 BC057826	-118603	-	TSC_hg19_v1_chr2_-_180726110 NM_152520	-264252	-	BC092423 TSC_hg19_v1_chr2_-_180726080	-264344	-	TSC_hg19_v1_chr2_+_181845341 NM_182678 NM_006357	854808	+	TSC_hg19_v1_chr2_+_181845369 BC092407	854953	+	AF085362 BC003554 AB017644 TSC_hg19_v1_chr2_+_181845681	855226	+	BC031216|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##NM_020943|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##AK025635|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##BC057826|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##NM_152520|ZNF385B|151126|zinc finger protein 385B##BC092423|ZNF385B|151126|zinc finger protein 385B##NM_182678|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##NM_006357|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC092407|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AF085362|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC003554|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AB017644|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3	0.999843	0.060268	
chr1	238169679	238169813	reg1000571.p1	13.381	+	AK314151 NM_021186	-115525	-	NM_001035 X98330 Y08218	-963973	+	TSC_hg19_v1_chr1_+_236958699 U75743 U71285 BC130616 BC136440 BC144095 BC144097 BC144098	-1210911	+	TSC_hg19_v1_chr1_+_239550016 AK056349	1380196	+	AF279779 NM_000740	1622626	+	TSC_hg19_v1_chr1_+_240255182 NM_020066	2085431	+	AK314151|ZP4|57829|zona pellucida glycoprotein 4##NM_021186|ZP4|57829|zona pellucida glycoprotein 4##NM_001035|RYR2|6262|ryanodine receptor 2 (cardiac)##X98330|RYR2|6262|ryanodine receptor 2 (cardiac)##Y08218|RYR2|6262|ryanodine receptor 2 (cardiac)##U75743|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U71285|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC130616|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC136440|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144095|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144097|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144098|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK056349|CHRM3|1131|cholinergic receptor, muscarinic 3##AF279779|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_000740|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_020066|FMN2|56776|formin 2	0.98472	0.0	
chr7	28855642	28855806	reg1000671.p1	13.379	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	-130041	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-324959	+	L05911 NM_004904	-380491	+	CU690330 TSC_hg19_v1_chr7_-_28997732	141973	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	142205	-	AK293803 NM_014817 TSC_hg19_v1_chr7_-_28998036	142308	-	L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats##NM_014817|TRIL|9865|TLR4 interactor with leucine-rich repeats	0.246838	0.0	denovo_WM_7:21:0.247
chr17	37213174	37213321	reg1000505.p1	13.377	+	BC140879 BC140880 NM_001008777 AY700575	-89608	-	TSC_hg19_v1_chr17_+_37026351 X82456 BC012460 DQ891539 DQ894728 AB463833 CU675705 AK289847	-186851	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	-186933	+	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	94485	-	TSC_hg19_v1_chr17_-_37307863 BC036059	94600	-	TSC_hg19_v1_chr17_-_37307891 NM_020405	94648	-	BC140879|FBXO47|494188|F-box protein 47##BC140880|FBXO47|494188|F-box protein 47##NM_001008777|FBXO47|494188|F-box protein 47##AY700575|FBXO47|494188|F-box protein 47##X82456|LASP1|3927|LIM and SH3 protein 1##BC012460|LASP1|3927|LIM and SH3 protein 1##DQ891539|LASP1|3927|LIM and SH3 protein 1##DQ894728|LASP1|3927|LIM and SH3 protein 1##AK289847|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1##NM_020405|PLXDC1|57125|plexin domain containing 1	0.0	0.0	
chrX	48815833	48816003	reg1000567.p1	13.373	+	TSC_hg19_v1_chrX_-_48815644 NM_001136159	-274	-	TSC_hg19_v1_chrX_-_48815601 AK294590	-311	-	TSC_hg19_v1_chrX_-_48815168 BC098440	-787	-	BC045659 NM_004979 TSC_hg19_v1_chrX_-_48828252	12333	-	TSC_hg19_v1_chrX_-_48858674 AB032993 AB527837 AK292158 BC101544 BC101546 BX647801 BX647804 NM_020137 NM_207672	42730	-	AB527281 EU446500 EU831602 EU831689 AK313540 BC001532 TSC_hg19_v1_chrX_-_48900884	84908	-	NM_001136159|OTUD5|55593|OTU domain containing 5##AK294590|OTUD5|55593|OTU domain containing 5##BC098440|OTUD5|55593|OTU domain containing 5##BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##AB032993|GRIPAP1|56850|GRIP1 associated protein 1##AK292158|GRIPAP1|56850|GRIP1 associated protein 1##BC101544|GRIPAP1|56850|GRIP1 associated protein 1##BC101546|GRIPAP1|56850|GRIP1 associated protein 1##BX647801|GRIPAP1|56850|GRIP1 associated protein 1##BX647804|GRIPAP1|56850|GRIP1 associated protein 1##NM_020137|GRIPAP1|56850|GRIP1 associated protein 1##NM_207672|GRIPAP1|56850|GRIP1 associated protein 1##EU446500|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831602|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831689|TFE3|7030|transcription factor binding to IGHM enhancer 3##AK313540|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC001532|TFE3|7030|transcription factor binding to IGHM enhancer 3	1.618328	0.0	denovo_WM_7:6:0.541	denovo_WM_7:-8:0.537
chr9	100321619	100321767	reg1000423.p1	13.371	+	TSC_hg19_v1_chr9_+_100263947 BC002660 NM_003275	-57755	+	NM_001166116 AK314533	-58231	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	-147314	+	TSC_hg19_v1_chr9_-_100395642 AK094043 AK291199 AX748426 BC035604 BX648493 BX538308 AK128615	73936	-	NM_002486 AK312807 TSC_hg19_v1_chr9_+_100395897 D32002	74133	+	NM_139246	74268	-	BC002660|TMOD1|7111|tropomodulin 1##NM_003275|TMOD1|7111|tropomodulin 1##NM_001166116|TMOD1|7111|tropomodulin 1##AK314533|TMOD1|7111|tropomodulin 1##AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7##AK094043|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK291199|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BC035604|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX648493|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX538308|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK128615|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##NM_002486|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##AK312807|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##D32002|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##NM_139246|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	0.987975	0.0	denovo_WM_7:64:0.903
chr1	17278290	17278413	reg1000830.p1	13.364	+	TSC_hg19_v1_chr1_+_17248425 NM_014675	-29917	+	AK123337 TSC_hg19_v1_chr1_-_16971178	-307174	-	TSC_hg19_v1_chr1_-_16971175 AK090414	-307185	-	TSC_hg19_v1_chr1_-_17307116 BC028033 AK222751 BC015039 NM_001135248 NM_002403	28798	-	AK301655 NM_001135247 NM_017459	29725	-	AL354615 AY461712 TSC_hg19_v1_chr1_-_17338424 BC030267 AK290210 NM_001141973 NM_001141974 NM_022089	60032	-	NM_014675|CROCC|9696|ciliary rootlet coiled-coil, rootletin##AK123337|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK090414|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##BC028033|MFAP2|4237|microfibrillar-associated protein 2##AK222751|MFAP2|4237|microfibrillar-associated protein 2##BC015039|MFAP2|4237|microfibrillar-associated protein 2##NM_001135248|MFAP2|4237|microfibrillar-associated protein 2##NM_002403|MFAP2|4237|microfibrillar-associated protein 2##AK301655|MFAP2|4237|microfibrillar-associated protein 2##NM_001135247|MFAP2|4237|microfibrillar-associated protein 2##NM_017459|MFAP2|4237|microfibrillar-associated protein 2##AL354615|ATP13A2|23400|ATPase type 13A2##AY461712|ATP13A2|23400|ATPase type 13A2##BC030267|ATP13A2|23400|ATPase type 13A2##AK290210|ATP13A2|23400|ATPase type 13A2##NM_001141973|ATP13A2|23400|ATPase type 13A2##NM_001141974|ATP13A2|23400|ATPase type 13A2##NM_022089|ATP13A2|23400|ATPase type 13A2	1.204519	0.935624	CTCF.p2:10:0.936	denovo_WM_7:30:0.215	denovo_WM_7:33:0.511	denovo_WM_7:45:0.219
chr2	65657923	65658088	reg1000664.p1	13.361	+	TSC_hg19_v1_chr2_-_65593867 NM_001128210	-64107	-	TSC_hg19_v1_chr2_-_65593766 AK299079	-64232	-	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-203070	+	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	1207	-	TSC_hg19_v1_chr2_-_65659661 BC111495 NM_181784	1671	-	TSC_hg19_v1_chr2_+_65663818 AK131224 BC033059	5832	+	NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC111495|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_181784|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK131224|FLJ16124|440867|FLJ16124 protein##BC033059|FLJ16124|440867|FLJ16124 protein	0.952041	0.0	denovo_WM_7:0:0.939
chr19	7242724	7242844	reg1000255.p1	13.356	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-143233	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-173069	+	AK315405 NM_001044387 NM_001044388 NM_024341	-173322	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	51176	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	217223	+	TSC_hg19_v1_chr19_+_7460061 AB011093	217293	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.976814	0.0	
chr12	110894441	110894582	reg1000648.p1	13.355	+	TSC_hg19_v1_chr12_-_110888163 AK311789	-6342	-	TSC_hg19_v1_chr12_-_110888152 NM_005719	-6357	-	TSC_hg19_v1_chr12_-_110888134 AK297309	-6369	-	AM992619 AM992620 AY364262 CU678955 CU689082 AB528074 AM393009 AM393821 TSC_hg19_v1_chr12_-_110906038 AF117229	11519	-	TSC_hg19_v1_chr12_-_110906063 AK223209 AK314946 BC008416 BC031024 AY359078 BX537973 NM_001164373 NM_016301	11561	-	TSC_hg19_v1_chr12_+_110906228 AK296280 AK297684 NM_013300 AK225731 U79274 BC020967	11798	+	AK311789|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##NM_005719|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AK297309|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AM992619|GPN3|51184|GPN-loop GTPase 3##AM992620|GPN3|51184|GPN-loop GTPase 3##AY364262|GPN3|51184|GPN-loop GTPase 3##AM393009|GPN3|51184|GPN-loop GTPase 3##AM393821|GPN3|51184|GPN-loop GTPase 3##AF117229|GPN3|51184|GPN-loop GTPase 3##AK223209|GPN3|51184|GPN-loop GTPase 3##AK314946|GPN3|51184|GPN-loop GTPase 3##BC008416|GPN3|51184|GPN-loop GTPase 3##BC031024|GPN3|51184|GPN-loop GTPase 3##AY359078|GPN3|51184|GPN-loop GTPase 3##BX537973|GPN3|51184|GPN-loop GTPase 3##NM_001164373|GPN3|51184|GPN-loop GTPase 3##NM_016301|GPN3|51184|GPN-loop GTPase 3##AK296280|C12orf24|29902|chromosome 12 open reading frame 24##AK297684|C12orf24|29902|chromosome 12 open reading frame 24##NM_013300|C12orf24|29902|chromosome 12 open reading frame 24##AK225731|C12orf24|29902|chromosome 12 open reading frame 24##U79274|C12orf24|29902|chromosome 12 open reading frame 24##BC020967|C12orf24|29902|chromosome 12 open reading frame 24	0.997348	0.0	denovo_WM_7:-7:0.816
chr15	52395911	52396081	reg1000726.p1	13.344	+	TSC_hg19_v1_chr15_+_52311442 BC035492	-84535	+	TSC_hg19_v1_chr15_+_52311432 CR749401	-84562	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	-84577	+	AF285092 AB587584 TSC_hg19_v1_chr15_-_52404936 BC093826 BC093828 BC143227 BC104442 BC104443 AF326964 NM_020396	8950	-	AB528747 AF501885 AM393025 TSC_hg19_v1_chr15_-_52472123 AL117471 BC011671 AK314775 BC013997 AF017656 NM_006578 AK290330	76145	-	TSC_hg19_v1_chr15_+_52472257 AF007131	76339	+	BC035492|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##AF285092|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093826|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093828|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104442|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104443|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF326964|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##NM_020396|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF501885|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AM393025|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AL117471|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC011671|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK314775|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC013997|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF017656|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##NM_006578|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK290330|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973	0.985895	0.0	denovo_WM_7:13:0.539	denovo_WM_7:14:0.348
chr1	54954021	54954201	reg1000693.p2	13.341	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-82027	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	-82089	-	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	-82323	-	TSC_hg19_v1_chr1_+_55007956 AK091112	53850	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	59783	+	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	135037	-	NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A	0.0	0.0	
chr16	11676131	11676277	reg1000564.p2	13.334	+	TSC_hg19_v1_chr16_+_11439315 BC013040	-236886	+	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	-236910	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-301062	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	3983	-	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	4585	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	86094	+	BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin	0.992562	0.0	
chr9	88721853	88722003	reg1000799.p1	13.332	+	TSC_hg19_v1_chr9_-_88715117 AK075557 AK092943 AX747818 NM_177937	-6844	-	TSC_hg19_v1_chr9_-_88714486 NM_016548	-7422	-	TSC_hg19_v1_chr9_-_88714474 AK027717	-7457	-	NM_001010907 BC108665	152605	-	TSC_hg19_v1_chr9_+_88897112 AK025086	175185	+	AB528754 AM393721 TSC_hg19_v1_chr9_-_88897454 BC053900 BC071621 AY015642 AL834356 AF284752 BC002675 AK055643 AK225937 AK309289 NM_030940	175516	-	AK075557|GOLM1|51280|golgi membrane protein 1##AK092943|GOLM1|51280|golgi membrane protein 1##NM_177937|GOLM1|51280|golgi membrane protein 1##NM_016548|GOLM1|51280|golgi membrane protein 1##AK027717|GOLM1|51280|golgi membrane protein 1##NM_001010907|C9orf153|389766|chromosome 9 open reading frame 153##BC108665|C9orf153|389766|chromosome 9 open reading frame 153##BC053900|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##BC071621|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##AY015642|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##AL834356|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##AF284752|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##BC002675|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##AK055643|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##AK225937|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)##NM_030940|ISCA1|81689|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	0.999297	0.0	
chr16	15850555	15850666	reg1000622.p1	13.322	+	TSC_hg19_v1_chr16_-_15835382 D10667	-15163	-	BX641087 TSC_hg19_v1_chr16_-_15833973	-16655	-	NM_017668 BC001421 TSC_hg19_v1_chr16_+_15744101 AK000108 AK025815	-106503	+	BC101677 BC104906 BC143364 AB020673 AY520816 AY520817 TSC_hg19_v1_chr16_-_15950886 AK308389 BC031040 EU489063 NM_001040113 NM_001040114 NM_002474 NM_022844	100259	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	131843	-	AL832498 TSC_hg19_v1_chr16_-_15982471	131875	-	D10667|MYH11|4629|myosin, heavy chain 11, smooth muscle##BX641087|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_017668|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC001421|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK000108|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK025815|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC101677|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC104906|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC143364|MYH11|4629|myosin, heavy chain 11, smooth muscle##AB020673|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520816|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520817|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK308389|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC031040|MYH11|4629|myosin, heavy chain 11, smooth muscle##EU489063|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040113|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040114|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_002474|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_022844|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##AL832498|FOPNL|123811|FGFR1OP N-terminal like	0.995245	0.997498	CTCF.p2:-2:0.997
chrUn_gl000220	99861	100034	reg1013406.p1	13.318	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr3	55522473	55522602	reg1000698.p2	13.316	+	TSC_hg19_v1_chr3_-_55521567 AK090582	-919	-	BC064694 NM_003392 AK290375 TSC_hg19_v1_chr3_-_55521332	-1205	-	AK290869 TSC_hg19_v1_chr3_-_55515412	-7129	-	BC111550 BC112391 AB002376 NM_015576	979840	-	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	1068665	+	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	1068709	+	AK090582|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC064694|WNT5A|7474|wingless-type MMTV integration site family, member 5A##NM_003392|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290375|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290869|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC111550|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##BC112391|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##AB002376|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_015576|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66	1.49847	0.0	denovo_WM_7:-69:0.264	denovo_WM_7:-88:0.233	denovo_WM_7:-91:0.468
chr10	3852631	3852811	reg1000602.p2	13.315	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-25212	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-25410	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-637716	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1015697	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1152793	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1152902	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.992539	0.0	
chr15	72036410	72036552	reg1000722.p1	13.314	+	AK299056 AK303870 BX648716 TSC_hg19_v1_chr15_+_71839574 AY358143	-196901	+	NM_024817 BC140868	-602671	+	BC048128 AL080151 BC039359 NM_001102658 TSC_hg19_v1_chr15_-_71407943	-628610	-	AF121129 NM_014249 NM_016346 AF148128	66431	+	AK097557 NM_001166340	370117	+	NM_001172109 NM_001172110	372737	+	AK299056|THSD4|79875|thrombospondin, type I, domain containing 4##AK303870|THSD4|79875|thrombospondin, type I, domain containing 4##BX648716|THSD4|79875|thrombospondin, type I, domain containing 4##AY358143|THSD4|79875|thrombospondin, type I, domain containing 4##NM_024817|THSD4|79875|thrombospondin, type I, domain containing 4##BC140868|THSD4|79875|thrombospondin, type I, domain containing 4##BC048128|CT62|196993|cancer/testis antigen 62##AL080151|CT62|196993|cancer/testis antigen 62##BC039359|CT62|196993|cancer/testis antigen 62##NM_001102658|CT62|196993|cancer/testis antigen 62##AF121129|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_014249|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_016346|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AF148128|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AK097557|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001166340|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172109|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172110|SENP8|123228|SUMO/sentrin specific peptidase family member 8	0.999911	0.998135	CTCF.p2:-31:0.998
chr17	25927013	25927123	reg1000501.p1	13.311	+	BC035488 BC042106 NM_014238	-128039	+	TSC_hg19_v1_chr17_+_25621147 AF069313 AF240696 BC021110 AF112205 AF106683 AF072880 AB463346 AM393409 AM393665 CU676828	-305787	+	AL110243 NM_015626 NM_134265 AK307114 TSC_hg19_v1_chr17_+_25621139 AL110269 AK074917 AK294516 AK300262 BC048007 AK222576	-305946	+	TSC_hg19_v1_chr17_+_25958181 NM_002308 NM_009587	31100	+	TSC_hg19_v1_chr17_+_25958213 AB006782 AK223232	31135	+	TSC_hg19_v1_chr17_+_25958238 AB005894 AK301624 BC110340 AK296031	31160	+	BC035488|KSR1|8844|kinase suppressor of ras 1##BC042106|KSR1|8844|kinase suppressor of ras 1##NM_014238|KSR1|8844|kinase suppressor of ras 1##AF069313|WSB1|26118|WD repeat and SOCS box containing 1##AF240696|WSB1|26118|WD repeat and SOCS box containing 1##BC021110|WSB1|26118|WD repeat and SOCS box containing 1##AF112205|WSB1|26118|WD repeat and SOCS box containing 1##AF106683|WSB1|26118|WD repeat and SOCS box containing 1##AF072880|WSB1|26118|WD repeat and SOCS box containing 1##AM393409|WSB1|26118|WD repeat and SOCS box containing 1##AM393665|WSB1|26118|WD repeat and SOCS box containing 1##AL110243|WSB1|26118|WD repeat and SOCS box containing 1##NM_015626|WSB1|26118|WD repeat and SOCS box containing 1##NM_134265|WSB1|26118|WD repeat and SOCS box containing 1##AK307114|WSB1|26118|WD repeat and SOCS box containing 1##AL110269|WSB1|26118|WD repeat and SOCS box containing 1##AK074917|WSB1|26118|WD repeat and SOCS box containing 1##AK294516|WSB1|26118|WD repeat and SOCS box containing 1##AK300262|WSB1|26118|WD repeat and SOCS box containing 1##BC048007|WSB1|26118|WD repeat and SOCS box containing 1##AK222576|WSB1|26118|WD repeat and SOCS box containing 1##NM_002308|LGALS9|3965|lectin, galactoside-binding, soluble, 9##NM_009587|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB006782|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK223232|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB005894|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK301624|LGALS9|3965|lectin, galactoside-binding, soluble, 9##BC110340|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK296031|LGALS9|3965|lectin, galactoside-binding, soluble, 9	0.999644	0.980721	CTCF.p2:1:0.981
chr2	166060589	166060697	reg1000444.p2	13.306	+	AF225986 AF225987 AK299757 TSC_hg19_v1_chr2_-_166060561 NM_001081676 NM_001081677 NM_006922 DQ993536	-66	-	AK293998 AK097141 NM_001199148 NM_173512	-248629	-	AK225849 BC006264 TSC_hg19_v1_chr2_-_165698685 AK294937	-362021	-	AK289656 NM_001040142 DQ993531 BC029489 BC047398 BC048417	35289	+	NM_021007	89697	+	NM_001040143	91639	+	AF225986|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AF225987|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AK299757|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001081676|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001081677|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_006922|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AK293998|SLC38A11|151258|solute carrier family 38, member 11##AK097141|SLC38A11|151258|solute carrier family 38, member 11##NM_001199148|SLC38A11|151258|solute carrier family 38, member 11##NM_173512|SLC38A11|151258|solute carrier family 38, member 11##AK225849|COBLL1|22837|COBL-like 1##BC006264|COBLL1|22837|COBL-like 1##AK294937|COBLL1|22837|COBL-like 1##AK289656|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##NM_001040142|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##DQ993531|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC029489|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC047398|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC048417|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##NM_021007|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##NM_001040143|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	0.971306	0.996532	CTCF.p2:20:0.997	denovo_WM_7:-25:0.779
chr12	123943070	123943189	reg1000637.p3	13.305	+	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	-426	+	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	-21888	-	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	-22117	-	BC093671 BC111955 NM_180699	1256	+	BC089444 TSC_hg19_v1_chr12_-_124018263 NM_178314	75045	-	TSC_hg19_v1_chr12_-_124018501 AK096697	75368	-	NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC093671|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC111955|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##NM_180699|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC089444|RILPL1|353116|Rab interacting lysosomal protein-like 1##NM_178314|RILPL1|353116|Rab interacting lysosomal protein-like 1##AK096697|RILPL1|353116|Rab interacting lysosomal protein-like 1	0.998701	0.0	denovo_WM_7:17:0.435	denovo_WM_7:18:0.435
chr21	46347452	46347593	reg1000821.p1	13.299	+	AB208909 TSC_hg19_v1_chr21_-_46340890 NM_000211	-6603	-	AK222505 TSC_hg19_v1_chr21_-_46340824	-6691	-	TSC_hg19_v1_chr21_-_46340815 L78790 AK303488 M15395 AK128344	-6725	-	TSC_hg19_v1_chr21_-_46348634 AK095992 NM_001127491	1170	-	BC128244 BC128245 AF380178 AY040088 TSC_hg19_v1_chr21_-_46359834 AK127059	12241	-	TSC_hg19_v1_chr21_+_46359920 AF391113 AF391114 BC009341 NM_058190	12403	+	AB208909|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_000211|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK222505|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##L78790|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK303488|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##M15395|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK128344|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK095992|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_001127491|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##BC128244|C21orf67|84536|chromosome 21 open reading frame 67##BC128245|C21orf67|84536|chromosome 21 open reading frame 67##AF380178|C21orf67|84536|chromosome 21 open reading frame 67##AY040088|C21orf67|84536|chromosome 21 open reading frame 67##AF391113|FAM207A|85395|family with sequence similarity 207, member A##AF391114|FAM207A|85395|family with sequence similarity 207, member A##BC009341|FAM207A|85395|family with sequence similarity 207, member A##NM_058190|FAM207A|85395|family with sequence similarity 207, member A	0.992664	0.0	denovo_WM_7:-5:0.316	denovo_WM_7:-6:0.654
chr2	172193299	172193439	reg1000679.p1	13.295	+	AK090779 NM_001136554	-105546	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-175870	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-176273	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	97157	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	97393	+	TSC_hg19_v1_chr2_+_172290824 CR933646	97442	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	0.995746	0.0	
chr1	150505181	150505290	reg1000761.p1	13.288	+	AK292435 TSC_hg19_v1_chr1_+_150480584 AK301369 AK316390 AK302279 U65932 DQ893011 DQ896257	-24601	+	NM_001202858 NM_004425 NM_022664 TSC_hg19_v1_chr1_+_150480582 AK097205 AK097046 BC023505 DQ010946 DQ112074 U68186 U68187	-24701	+	TSC_hg19_v1_chr1_+_150459916 AK225368 BC009997 NM_025150 AB384782 BC007824	-45303	+	TSC_hg19_v1_chr1_+_150521883 AF289612 NM_019032 NM_025008	16619	+	AB385142 AF203373 BT006640 CU677857 DQ890628 DQ893795 FJ917536 TSC_hg19_v1_chr1_-_150552076 AF118124 BC017197 BC071897 L08246 AK300499 BC107735 AK294462	46805	-	TSC_hg19_v1_chr1_-_150552077 AK316267 AK297217 AK304775 AK312508	46846	-	AK292435|ECM1|1893|extracellular matrix protein 1##AK301369|ECM1|1893|extracellular matrix protein 1##AK316390|ECM1|1893|extracellular matrix protein 1##AK302279|ECM1|1893|extracellular matrix protein 1##U65932|ECM1|1893|extracellular matrix protein 1##DQ893011|ECM1|1893|extracellular matrix protein 1##DQ896257|ECM1|1893|extracellular matrix protein 1##NM_001202858|ECM1|1893|extracellular matrix protein 1##NM_004425|ECM1|1893|extracellular matrix protein 1##NM_022664|ECM1|1893|extracellular matrix protein 1##AK097205|ECM1|1893|extracellular matrix protein 1##AK097046|ECM1|1893|extracellular matrix protein 1##BC023505|ECM1|1893|extracellular matrix protein 1##U68186|ECM1|1893|extracellular matrix protein 1##U68187|ECM1|1893|extracellular matrix protein 1##AK225368|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##BC009997|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##NM_025150|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##BC007824|TARS2|80222|threonyl-tRNA synthetase 2, mitochondrial (putative)##AF289612|ADAMTSL4|54507|ADAMTS-like 4##NM_019032|ADAMTSL4|54507|ADAMTS-like 4##NM_025008|ADAMTSL4|54507|ADAMTS-like 4##AF203373|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BT006640|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ890628|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ893795|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##FJ917536|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AF118124|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC017197|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC071897|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##L08246|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK300499|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC107735|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK294462|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK316267|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK297217|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK304775|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK312508|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)	0.989082	0.0	denovo_WM_7:18:0.598	denovo_WM_7:20:0.214
chr12	25205057	25205216	reg1000224.p2	13.287	+	BC035880 NM_001101339 BC046192 BC062789	-54724	-	TSC_hg19_v1_chr12_-_25102303 AK056255 NM_001178091 NM_001178092 NM_005504	-102800	-	TSC_hg19_v1_chr12_-_25102021 BX647122 AK128527	-103116	-	NM_001204126 NM_001204127 NM_006152	44	+	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	444	+	BC028415 AK297998 AK302235 AK301763 AK093102 AX747924 BC031047 BC047415 BC057795 NM_001082972 NM_001082973 NM_001204101 NM_001204102 NM_018272 AK304602	142927	-	BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##AK056255|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178091|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178092|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_005504|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BX647122|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK128527|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein##BC028415|CASC1|55259|cancer susceptibility candidate 1##AK297998|CASC1|55259|cancer susceptibility candidate 1##AK302235|CASC1|55259|cancer susceptibility candidate 1##AK301763|CASC1|55259|cancer susceptibility candidate 1##AK093102|CASC1|55259|cancer susceptibility candidate 1##BC031047|CASC1|55259|cancer susceptibility candidate 1##BC047415|CASC1|55259|cancer susceptibility candidate 1##BC057795|CASC1|55259|cancer susceptibility candidate 1##NM_001082972|CASC1|55259|cancer susceptibility candidate 1##NM_001082973|CASC1|55259|cancer susceptibility candidate 1##NM_001204101|CASC1|55259|cancer susceptibility candidate 1##NM_001204102|CASC1|55259|cancer susceptibility candidate 1##NM_018272|CASC1|55259|cancer susceptibility candidate 1##AK304602|CASC1|55259|cancer susceptibility candidate 1	0.99986	0.0	
chr14	21249009	21249165	reg1000390.p1	13.287	+	AY358865 NM_022360 BC128030	-12484	+	NM_006683 X76383 BC096698 BC096731 BC069407	-34975	+	TSC_hg19_v1_chr14_+_21156940 NM_001097577 NM_194431 BC062698 BC020704	-92155	+	BC020848 NM_005615 AK313580	131	+	AK098375 NM_198232	21460	-	TSC_hg19_v1_chr14_-_21271004 AK312100 BC022882 BC005324 NM_002933 NM_198234 NM_198235	21931	-	AY358865|EDDM3B|64184|epididymal protein 3B##NM_022360|EDDM3B|64184|epididymal protein 3B##BC128030|EDDM3B|64184|epididymal protein 3B##NM_006683|EDDM3A|10876|epididymal protein 3A##X76383|EDDM3A|10876|epididymal protein 3A##BC096698|EDDM3A|10876|epididymal protein 3A##BC096731|EDDM3A|10876|epididymal protein 3A##BC069407|EDDM3A|10876|epididymal protein 3A##NM_001097577|ANG|283|angiogenin, ribonuclease, RNase A family, 5##NM_194431|RNASE4|6038|ribonuclease, RNase A family, 4##BC062698|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC020704|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC020848|RNASE6|6039|ribonuclease, RNase A family, k6##NM_005615|RNASE6|6039|ribonuclease, RNase A family, k6##AK313580|RNASE6|6039|ribonuclease, RNase A family, k6##AK098375|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198232|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##AK312100|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##BC022882|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##BC005324|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_002933|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198234|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198235|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)	0.0	0.0	
chrX	153166465	153166626	reg1000619.p2	13.287	+	TSC_hg19_v1_chrX_-_153151599 BC021858	-14943	-	NM_000425 NM_001143963 NM_024003 BC126229 BC136447 TSC_hg19_v1_chrX_-_153141452	-25094	-	AB102653 EF506611 X59847 M74387 M77640 AK289754 TSC_hg19_v1_chrX_-_153141346	-25230	-	NM_000054 NM_001146151 Z11687 AF030626 AF032388 AF101727 AF101728 BC101484 BC112181 AB527584 AY242131	4018	+	D50921 AM392626 AM393222 AB384442 TSC_hg19_v1_chrX_-_153191680	25117	-	TSC_hg19_v1_chrX_-_153191700 AY183123 X78817	25148	-	NM_000425|L1CAM|3897|L1 cell adhesion molecule##NM_001143963|L1CAM|3897|L1 cell adhesion molecule##NM_024003|L1CAM|3897|L1 cell adhesion molecule##BC126229|L1CAM|3897|L1 cell adhesion molecule##BC136447|L1CAM|3897|L1 cell adhesion molecule##AB102653|L1CAM|3897|L1 cell adhesion molecule##EF506611|L1CAM|3897|L1 cell adhesion molecule##X59847|L1CAM|3897|L1 cell adhesion molecule##M74387|L1CAM|3897|L1 cell adhesion molecule##M77640|L1CAM|3897|L1 cell adhesion molecule##AK289754|L1CAM|3897|L1 cell adhesion molecule##NM_000054|AVPR2|554|arginine vasopressin receptor 2##NM_001146151|AVPR2|554|arginine vasopressin receptor 2##Z11687|AVPR2|554|arginine vasopressin receptor 2##AF030626|AVPR2|554|arginine vasopressin receptor 2##AF032388|AVPR2|554|arginine vasopressin receptor 2##AF101727|AVPR2|554|arginine vasopressin receptor 2##AF101728|AVPR2|554|arginine vasopressin receptor 2##BC101484|AVPR2|554|arginine vasopressin receptor 2##BC112181|AVPR2|554|arginine vasopressin receptor 2##AY242131|AVPR2|554|arginine vasopressin receptor 2##D50921|ARHGAP4|393|Rho GTPase activating protein 4##AM392626|ARHGAP4|393|Rho GTPase activating protein 4##AM393222|ARHGAP4|393|Rho GTPase activating protein 4##AY183123|ARHGAP4|393|Rho GTPase activating protein 4##X78817|ARHGAP4|393|Rho GTPase activating protein 4	0.966365	0.0	denovo_WM_7:17:0.334	denovo_WM_7:19:0.335
chr7	35113150	35113278	reg1000862.p1	13.286	+	DQ287932 NM_015283	-35562	-	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	-415295	+	AK289963 NM_133468 AK096150 BC060868	-1168072	+	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	112578	-	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	180516	-	TSC_hg19_v1_chr7_-_35734533 BC005091	621382	-	DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20##BC005091|HERPUD2|64224|HERPUD family member 2	0.988742	0.999248	denovo_WM_7:18:0.359	denovo_WM_7:20:0.615	CTCF.p2:-30:0.999
chr9	126851985	126852136	reg1000757.p1	13.280	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-77989	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-78177	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-159749	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	167950	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	168185	+	TSC_hg19_v1_chr9_+_127020255 AB026289	168204	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	1.010364	0.0	
chr18	51790500	51790677	reg1000732.p2	13.273	+	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	-39511	-	TSC_hg19_v1_chr18_-_51750997 BC032638	-39623	-	AF072246 TSC_hg19_v1_chr18_-_51750614	-40051	-	NM_007195 TSC_hg19_v1_chr18_+_51795943 AK301578 AF140501 BC032617 BC032662 AL136670 AF245438 AK093688 AB463184 AM392978 DQ890893 DQ896811 CU689468	5352	+	AB528241 AF480305 NM_139171	90354	-	BX640877 NM_173529	94582	+	AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##NM_007195|POLI|11201|polymerase (DNA directed) iota##AK301578|POLI|11201|polymerase (DNA directed) iota##AF140501|POLI|11201|polymerase (DNA directed) iota##BC032617|POLI|11201|polymerase (DNA directed) iota##BC032662|POLI|11201|polymerase (DNA directed) iota##AL136670|POLI|11201|polymerase (DNA directed) iota##AF245438|POLI|11201|polymerase (DNA directed) iota##AK093688|POLI|11201|polymerase (DNA directed) iota##AM392978|POLI|11201|polymerase (DNA directed) iota##DQ890893|POLI|11201|polymerase (DNA directed) iota##DQ896811|POLI|11201|polymerase (DNA directed) iota##AF480305|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##NM_139171|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##BX640877|C18orf54|162681|chromosome 18 open reading frame 54##NM_173529|C18orf54|162681|chromosome 18 open reading frame 54	0.983024	0.0	denovo_WM_7:9:0.230	denovo_WM_7:10:0.258	denovo_WM_7:11:0.495
chr22	38142148	38142259	reg1000652.p1	13.266	+	NM_001039141 TSC_hg19_v1_chr22_+_38093008 AK096634	-49201	+	TSC_hg19_v1_chr22_+_38082360 NM_024313 AK057139 AK294700 AK316443 BC002808 AK310084 AL160132 CR456463 AB528193 CU012996 CU013284 DQ278603	-59828	+	CR456511 NM_002305 EU363770 AK312161 BC020675 TSC_hg19_v1_chr22_+_38071644 AL832117 D28452 BC001693 AB097036 J04456 X15256 X14829	-70546	+	TSC_hg19_v1_chr22_+_38142244 NM_007032 NM_138632	34	+	TSC_hg19_v1_chr22_+_38142248 BC022200	43	+	TSC_hg19_v1_chr22_+_38142255 AF281030	53	+	NM_001039141|TRIOBP|11078|TRIO and F-actin binding protein##AK096634|TRIOBP|11078|TRIO and F-actin binding protein##NM_024313|NOL12|79159|nucleolar protein 12##AK057139|NOL12|79159|nucleolar protein 12##AK294700|NOL12|79159|nucleolar protein 12##AK316443|NOL12|79159|nucleolar protein 12##BC002808|NOL12|79159|nucleolar protein 12##AL160132|NOL12|79159|nucleolar protein 12##CR456463|NOL12|79159|nucleolar protein 12##CR456511|LGALS1|3956|lectin, galactoside-binding, soluble, 1##NM_002305|LGALS1|3956|lectin, galactoside-binding, soluble, 1##EU363770|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AK312161|LGALS1|3956|lectin, galactoside-binding, soluble, 1##BC020675|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AL832117|LGALS1|3956|lectin, galactoside-binding, soluble, 1##D28452|LGALS1|3956|lectin, galactoside-binding, soluble, 1##BC001693|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AB097036|LGALS1|3956|lectin, galactoside-binding, soluble, 1##J04456|LGALS1|3956|lectin, galactoside-binding, soluble, 1##X15256|LGALS1|3956|lectin, galactoside-binding, soluble, 1##X14829|LGALS1|3956|lectin, galactoside-binding, soluble, 1##NM_007032|TRIOBP|11078|TRIO and F-actin binding protein##NM_138632|TRIOBP|11078|TRIO and F-actin binding protein##BC022200|TRIOBP|11078|TRIO and F-actin binding protein##AF281030|TRIOBP|11078|TRIO and F-actin binding protein	0.998791	0.0	denovo_WM_7:26:0.307	denovo_WM_7:27:0.307	denovo_WM_7:28:0.307
chr12	109255748	109255902	reg1000656.p2	13.263	+	TSC_hg19_v1_chr12_-_109251360 BC062341 NM_001161330 NM_018984	-4403	-	AB072355 AB072356 TSC_hg19_v1_chr12_-_109251307	-4535	-	AK095421 NM_001161331	-34499	-	NM_001917 AX741655 AX741656 AX741658 AX776478 AX776479 AX786386 AK312995 BX538210 BC029057 BC074770	18095	+	BC033587 NM_018711 TSC_hg19_v1_chr12_-_109458878	203036	-	TSC_hg19_v1_chr12_+_109490413 NM_032663 BC004868 AJ586136 CU678780 DQ893401 DQ896783	234599	+	BC062341|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_001161330|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_018984|SSH1|54434|slingshot homolog 1 (Drosophila)##AB072355|SSH1|54434|slingshot homolog 1 (Drosophila)##AB072356|SSH1|54434|slingshot homolog 1 (Drosophila)##AK095421|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_001161331|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_001917|DAO|1610|D-amino-acid oxidase##AX741655|DAO|1610|D-amino-acid oxidase##AX741656|DAO|1610|D-amino-acid oxidase##AX741658|DAO|1610|D-amino-acid oxidase##AX776478|DAO|1610|D-amino-acid oxidase##AX776479|DAO|1610|D-amino-acid oxidase##AX786386|DAO|1610|D-amino-acid oxidase##AK312995|DAO|1610|D-amino-acid oxidase##BX538210|DAO|1610|D-amino-acid oxidase##BC029057|DAO|1610|D-amino-acid oxidase##BC074770|DAO|1610|D-amino-acid oxidase##BC033587|SVOP|55530|SV2 related protein homolog (rat)##NM_018711|SVOP|55530|SV2 related protein homolog (rat)##NM_032663|USP30|84749|ubiquitin specific peptidase 30##BC004868|USP30|84749|ubiquitin specific peptidase 30##AJ586136|USP30|84749|ubiquitin specific peptidase 30##DQ893401|USP30|84749|ubiquitin specific peptidase 30##DQ896783|USP30|84749|ubiquitin specific peptidase 30	0.998655	0.0	
chr6	158185521	158185685	reg1000736.p1	13.252	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-383064	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-440386	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-441019	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	58686	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	58771	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	217284	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.075559	0.482512	CTCF.p2:-10:0.483
chr2	24809915	24810075	reg1000877.p3	13.241	+	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	-2618	+	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	-226515	-	BC050462 NM_001040710	-412024	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	206243	-	NM_001199803 AK027859 TSC_hg19_v1_chr2_+_25016332 NM_024322 BC002870 AK315483	206276	+	HQ258684 AK027857 BC126235 BC144119 AF033861 NM_004036 AK122926	331962	-	NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001199803|CENPO|79172|centromere protein O##AK027859|CENPO|79172|centromere protein O##NM_024322|CENPO|79172|centromere protein O##BC002870|CENPO|79172|centromere protein O##AK315483|CENPO|79172|centromere protein O##HQ258684|ADCY3|109|adenylate cyclase 3##AK027857|ADCY3|109|adenylate cyclase 3##BC126235|ADCY3|109|adenylate cyclase 3##BC144119|ADCY3|109|adenylate cyclase 3##AF033861|ADCY3|109|adenylate cyclase 3##NM_004036|ADCY3|109|adenylate cyclase 3##AK122926|ADCY3|109|adenylate cyclase 3	0.986087	0.0	denovo_WM_7:-16:0.477
chr8	56769013	56769129	reg1000534.p1	13.239	+	AK054705 TSC_hg19_v1_chr8_+_56686187	-82888	+	TSC_hg19_v1_chr8_+_56686028 AY028423 AK314693 BX648548 AF432215	-83051	+	AK308247 AK056932 NM_152417 BC020835 BC071636	-83174	-	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	23294	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	23324	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	23449	+	AY028423|TGS1|96764|trimethylguanosine synthase 1##AK314693|TGS1|96764|trimethylguanosine synthase 1##BX648548|TGS1|96764|trimethylguanosine synthase 1##AF432215|TGS1|96764|trimethylguanosine synthase 1##AK308247|TMEM68|137695|transmembrane protein 68##AK056932|TMEM68|137695|transmembrane protein 68##NM_152417|TMEM68|137695|transmembrane protein 68##BC020835|TMEM68|137695|transmembrane protein 68##BC071636|TMEM68|137695|transmembrane protein 68##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	0.999093	0.0	
chr11	68034014	68034161	reg1000735.p2	13.231	+	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	-53108	-	NM_001277 NM_212469 TSC_hg19_v1_chr11_-_67888859	-145199	-	D10704 BC036471 TSC_hg19_v1_chr11_-_67888844	-145330	-	TSC_hg19_v1_chr11_-_68039418 AF264781	5299	-	TSC_hg19_v1_chr11_-_68039453 NM_022338	5371	-	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	46002	+	AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_001277|CHKA|1119|choline kinase alpha##NM_212469|CHKA|1119|choline kinase alpha##D10704|CHKA|1119|choline kinase alpha##BC036471|CHKA|1119|choline kinase alpha##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5	0.0	0.0	
chr11	58825969	58826098	reg1000887.p1	13.230	+	AK091965 AX747281 DQ084381 NM_001220496 NM_080661 AK055818	-115281	+	NM_001220494 AK300479 BC008353	-130896	+	BC021682 NM_145016 BC016789	-214045	-	TSC_hg19_v1_chr11_+_58874641 BC062456 NM_001142703 NM_001142704 NM_198947 BC005998 AK304258 AY457926 AK303520	48629	+	TSC_hg19_v1_chr11_-_58910222 AK124475 BC028022	84210	-	TSC_hg19_v1_chr11_+_58910331 AK092237 AX747422 NM_001142519 NM_001142520 NM_001142521	84277	+	AK091965|GLYATL1|92292|glycine-N-acyltransferase-like 1##DQ084381|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220496|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_080661|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK055818|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220494|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK300479|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC008353|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC021682|GLYATL2|219970|glycine-N-acyltransferase-like 2##NM_145016|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC016789|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC062456|FAM111B|374393|family with sequence similarity 111, member B##NM_001142703|FAM111B|374393|family with sequence similarity 111, member B##NM_001142704|FAM111B|374393|family with sequence similarity 111, member B##NM_198947|FAM111B|374393|family with sequence similarity 111, member B##BC005998|FAM111B|374393|family with sequence similarity 111, member B##AK304258|FAM111B|374393|family with sequence similarity 111, member B##AY457926|FAM111B|374393|family with sequence similarity 111, member B##AK303520|FAM111B|374393|family with sequence similarity 111, member B##AK092237|FAM111A|63901|family with sequence similarity 111, member A##NM_001142519|FAM111A|63901|family with sequence similarity 111, member A##NM_001142520|FAM111A|63901|family with sequence similarity 111, member A##NM_001142521|FAM111A|63901|family with sequence similarity 111, member A	0.146275	0.023712	
chr9	99180754	99180901	reg1000712.p2	13.229	+	TSC_hg19_v1_chr9_-_99180672 AY554164 AY554165 NM_153695	-143	-	BC126141 TSC_hg19_v1_chr9_-_99180642	-231	-	NM_007001 TSC_hg19_v1_chr9_-_99145994 BC113579	-34807	-	TSC_hg19_v1_chr9_+_99212450 NM_014282 BC018788 AF241831 AB463760	31642	+	TSC_hg19_v1_chr9_-_99329110 AK126388 NM_001077181	148320	-	TSC_hg19_v1_chr9_-_99382126 AF064104 AF064105 NM_003671 NM_033331	201293	-	AY554164|ZNF367|195828|zinc finger protein 367##AY554165|ZNF367|195828|zinc finger protein 367##NM_153695|ZNF367|195828|zinc finger protein 367##BC126141|ZNF367|195828|zinc finger protein 367##NM_007001|SLC35D2|11046|solute carrier family 35, member D2##BC113579|SLC35D2|11046|solute carrier family 35, member D2##NM_014282|HABP4|22927|hyaluronan binding protein 4##BC018788|HABP4|22927|hyaluronan binding protein 4##AF241831|HABP4|22927|hyaluronan binding protein 4##AK126388|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_001077181|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064104|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064105|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_003671|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_033331|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	0.0	0.0	
chr12	118283414	118283540	reg1000690.p1	13.227	+	AK294435 AF446135 EU753241 U17327 AK307481 NM_000620 NM_001204218	-483969	-	AF446136 TSC_hg19_v1_chr12_-_117799037	-484456	-	NM_001204214	-536263	-	NM_173598	122550	-	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	171091	+	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	215458	-	AK294435|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446135|NOS1|4842|nitric oxide synthase 1 (neuronal)##EU753241|NOS1|4842|nitric oxide synthase 1 (neuronal)##U17327|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK307481|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_000620|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204218|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446136|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204214|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_173598|KSR2|283455|kinase suppressor of ras 2##NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2	0.99652	0.0	denovo_WM_7:16:0.541	denovo_WM_7:17:0.202
chr3	29322353	29322503	reg1000715.p2	13.224	+	NM_001040432	-890442	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-931867	-	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	-932046	-	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	536	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	1325594	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	1325975	+	NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)	0.995064	0.731486	denovo_WM_7:3:0.738	CTCF.p2:-46:0.719
chr14	75965569	75965738	reg1000694.p1	13.221	+	BC051303 NM_001135049	-66817	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	-70640	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	-71012	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	23137	+	TSC_hg19_v1_chr14_+_75988840 D42106	23199	+	NM_017791 AY260572 AY260577 BC019087 AK000378	79312	+	BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2	0.994053	0.0	denovo_WM_7:4:0.429	denovo_WM_7:7:0.286	denovo_WM_7:8:0.245
chr21	35402715	35402896	reg1000551.p2	13.221	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-114713	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-212135	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-387950	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	43036	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	43124	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	333541	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.997943	0.0	denovo_WM_7:-1:0.881
chr19	1661316	1661427	reg1000495.p2	13.219	+	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	-9032	-	AB385055 BC110579 BC110580 M31523 NM_001136139	-11106	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-55898	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	92381	+	TSC_hg19_v1_chr19_+_1776120 AK074606	114816	+	AY302538 NM_001178002 TSC_hg19_v1_chr19_-_1812276 BC035162 NM_138813 AK125225 AK125969	150866	-	M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##NM_001080488|ONECUT3|390874|one cut homeobox 3##AY302538|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_001178002|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##BC035162|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_138813|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125225|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125969|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3	0.993772	0.0	
chr10	125974133	125974275	reg1000617.p1	13.209	+	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	-121051	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	-122305	-	BC137492 BC146862 AY358565 NM_198148	-322708	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	133269	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	133314	-	NM_001146340 TSC_hg19_v1_chr10_-_126138606	164373	-	BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##NM_001146340|NKX1-2|390010|NK1 homeobox 2	0.949206	0.0	denovo_WM_7:-38:0.250	denovo_WM_7:-44:0.351
chr8	65664654	65664787	reg1000699.p1	13.207	+	TSC_hg19_v1_chr8_+_65493611 AK091333	-171056	+	NM_152414 AK293979	-171862	+	TSC_hg19_v1_chr8_+_64081201 AL831816 AK056219 BC037492 AL832335	-1583520	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	46559	-	TSC_hg19_v1_chr8_-_66546394 AK001373	881675	-	TSC_hg19_v1_chr8_-_66546404 AK304463	881686	-	AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AL831816|YTHDF3|253943|YTH domain family, member 3##AK056219|YTHDF3|253943|YTH domain family, member 3##BC037492|YTHDF3|253943|YTH domain family, member 3##AL832335|YTHDF3|253943|YTH domain family, member 3##BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1	0.998056	0.921843	denovo_WM_7:17:0.637	CTCF.p2:-25:0.922
chr1	162006854	162006951	reg1000607.p2	13.206	+	AK316154 BC067274 NM_015441 TSC_hg19_v1_chr1_-_161993687	-13266	-	TSC_hg19_v1_chr1_+_161736145 BC014969 BC071997 AB208929 CU677145	-270766	+	AF005887 AK290498 TSC_hg19_v1_chr1_+_161736109	-270792	+	TSC_hg19_v1_chr1_+_162039485 BC041382 AB007933 NM_001164757 NM_014697	32622	+	AY841899 NM_001126060	325870	+	AB463503 CU689584 AY248900 BC032957 NM_182581	339709	-	AK316154|OLFML2B|25903|olfactomedin-like 2B##BC067274|OLFML2B|25903|olfactomedin-like 2B##NM_015441|OLFML2B|25903|olfactomedin-like 2B##BC014969|ATF6|22926|activating transcription factor 6##BC071997|ATF6|22926|activating transcription factor 6##AB208929|ATF6|22926|activating transcription factor 6##AF005887|ATF6|22926|activating transcription factor 6##AK290498|ATF6|22926|activating transcription factor 6##BC041382|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##AB007933|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##NM_001164757|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##NM_014697|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##AY841899|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##NM_001126060|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##AY248900|C1orf111|284680|chromosome 1 open reading frame 111##BC032957|C1orf111|284680|chromosome 1 open reading frame 111##NM_182581|C1orf111|284680|chromosome 1 open reading frame 111	1.985576	0.502855	CTCF.p2:14:0.503	denovo_WM_7:-46:0.341	denovo_WM_7:-48:0.580	denovo_WM_7:-64:0.236	denovo_WM_7:-65:0.237	denovo_WM_7:-66:0.239	denovo_WM_7:-67:0.239
chr20	3034654	3034771	reg1000660.p1	13.204	+	TSC_hg19_v1_chr20_+_3026675 NM_030811 BC013018 AF308301	-8018	+	AF036330 NM_001501 NM_178331 NM_178332 BC069362 BC115399 BC115400	-10445	+	TSC_hg19_v1_chr20_+_2944935 CU693258 DQ891155 DQ894334	-89786	+	BC069144 NM_000915 BC101841 BC101843 M25650 AB463993 M62611	17607	+	X03173 TSC_hg19_v1_chr20_+_3052956	18185	+	AF031476 M25647 X03172 BC126196 BC126224 BC018062 NM_000490	30640	-	NM_030811|MRPS26|64949|mitochondrial ribosomal protein S26##BC013018|MRPS26|64949|mitochondrial ribosomal protein S26##AF308301|MRPS26|64949|mitochondrial ribosomal protein S26##AF036330|GNRH2|2797|gonadotropin-releasing hormone 2##NM_001501|GNRH2|2797|gonadotropin-releasing hormone 2##NM_178331|GNRH2|2797|gonadotropin-releasing hormone 2##NM_178332|GNRH2|2797|gonadotropin-releasing hormone 2##BC069362|GNRH2|2797|gonadotropin-releasing hormone 2##BC115399|GNRH2|2797|gonadotropin-releasing hormone 2##BC115400|GNRH2|2797|gonadotropin-releasing hormone 2##DQ891155|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##DQ894334|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC069144|OXT|5020|oxytocin, prepropeptide##NM_000915|OXT|5020|oxytocin, prepropeptide##BC101841|OXT|5020|oxytocin, prepropeptide##BC101843|OXT|5020|oxytocin, prepropeptide##M25650|OXT|5020|oxytocin, prepropeptide##M62611|OXT|5020|oxytocin, prepropeptide##X03173|OXT|5020|oxytocin, prepropeptide##AF031476|AVP|551|arginine vasopressin##M25647|AVP|551|arginine vasopressin##X03172|AVP|551|arginine vasopressin##BC126196|AVP|551|arginine vasopressin##BC126224|AVP|551|arginine vasopressin##BC018062|AVP|551|arginine vasopressin##NM_000490|AVP|551|arginine vasopressin	0.996932	0.983039	CTCF.p2:-22:0.983	denovo_WM_7:53:0.841
chr12	129280923	129281103	reg1000738.p2	13.201	+	NM_001136103	-529066	+	NM_052907	-3469852	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-3730945	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	27430	-	BC043528 TSC_hg19_v1_chr12_+_129337985	56971	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	57074	+	NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1	1.974675	0.0	denovo_WM_7:-15:0.765	denovo_WM_7:-30:0.775
chr7	64129265	64129445	reg1000786.p1	13.196	+	TSC_hg19_v1_chr7_+_64126510 AK303931 BC017809 NM_001013746 NM_016220 BC047243	-2828	+	TSC_hg19_v1_chr7_-_64023456 AK122937 BC030700 NM_001130022 NM_178558	-105876	-	TSC_hg19_v1_chr7_-_64023450 AK094476	-105908	-	TSC_hg19_v1_chr7_+_64254799 NM_001160183 NM_006524 AK294302 AK298230 AK055644 BC141847 BC037426	125460	+	AK090648 AX746558 TSC_hg19_v1_chr7_+_64342925	213547	+	NM_021148 BC007078 BC019234 BC008386 BC063818 BC108740	234304	+	AK303931|ZNF107|51427|zinc finger protein 107##BC017809|ZNF107|51427|zinc finger protein 107##NM_001013746|ZNF107|51427|zinc finger protein 107##NM_016220|ZNF107|51427|zinc finger protein 107##BC047243|ZNF107|51427|zinc finger protein 107##AK122937|ZNF680|340252|zinc finger protein 680##BC030700|ZNF680|340252|zinc finger protein 680##NM_001130022|ZNF680|340252|zinc finger protein 680##NM_178558|ZNF680|340252|zinc finger protein 680##NM_001160183|ZNF138|7697|zinc finger protein 138##NM_006524|ZNF138|7697|zinc finger protein 138##AK294302|ZNF138|7697|zinc finger protein 138##AK298230|ZNF138|7697|zinc finger protein 138##AK055644|ZNF138|7697|zinc finger protein 138##BC141847|ZNF138|7697|zinc finger protein 138##BC037426|ZNF138|7697|zinc finger protein 138##AK090648|ZNF273|10793|zinc finger protein 273##NM_021148|ZNF273|10793|zinc finger protein 273##BC007078|ZNF273|10793|zinc finger protein 273##BC019234|ZNF273|10793|zinc finger protein 273##BC008386|ZNF273|10793|zinc finger protein 273##BC063818|ZNF273|10793|zinc finger protein 273##BC108740|ZNF273|10793|zinc finger protein 273	1.991981	0.0	denovo_WM_7:28:0.248	denovo_WM_7:29:0.213	denovo_WM_7:48:0.214	denovo_WM_7:49:0.249
chr16	70557475	70557624	reg1000634.p1	13.190	+	BC027726 AB088369 BC128144 BC128145 AK022874 BC072438 TSC_hg19_v1_chr16_-_70557452 BX648010 AK293235 AK297557 AK096557 NM_001195139 NM_015386	-105	-	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	-54709	+	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	-69050	+	TSC_hg19_v1_chr16_+_70557713 NM_012426 AK291768	151	+	BC009780 TSC_hg19_v1_chr16_+_70557724	175	+	TSC_hg19_v1_chr16_+_70557732 D87686 BC068974	199	+	BC027726|COG4|25839|component of oligomeric golgi complex 4##AB088369|COG4|25839|component of oligomeric golgi complex 4##BC128144|COG4|25839|component of oligomeric golgi complex 4##BC128145|COG4|25839|component of oligomeric golgi complex 4##AK022874|COG4|25839|component of oligomeric golgi complex 4##BC072438|COG4|25839|component of oligomeric golgi complex 4##BX648010|COG4|25839|component of oligomeric golgi complex 4##AK293235|COG4|25839|component of oligomeric golgi complex 4##AK297557|COG4|25839|component of oligomeric golgi complex 4##AK096557|COG4|25839|component of oligomeric golgi complex 4##NM_001195139|COG4|25839|component of oligomeric golgi complex 4##NM_015386|COG4|25839|component of oligomeric golgi complex 4##AK096727|FUK|197258|fucokinase##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##NM_012426|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##AK291768|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC009780|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##D87686|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC068974|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa	0.957384	0.0	denovo_WM_7:-13:0.870
chr19	43071234	43071346	reg1000662.p2	13.190	+	M76742 S71326 CU677011 AY766113 TSC_hg19_v1_chr19_-_43032631 D90311 X14831 X16354 D90313 J03858 BC024164 BC014473 D12502 D90312 M69176 M72238 AL833584 AK314211 NM_001024912 NM_001184813 NM_001184815 NM_001184816 NM_001205344 NM_001712	-38698	-	X16356 TSC_hg19_v1_chr19_-_43031473	-39881	-	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	-124166	-	CU693190 DQ891971 DQ895161 X52378 AK297012 BC026263 D90064 M33326 AK312652 NM_001816	27740	-	CU675189 M93061 S59493 DQ896462 EU176443 M34420 M37399 BC005924 NM_021016	173311	-	BC142628 AK300230 CR749812 BC137500 NM_001130167 NM_001130168 NM_182707	198534	-	M76742|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##S71326|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AY766113|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90311|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X14831|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X16354|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90313|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##J03858|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC024164|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC014473|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D12502|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90312|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M69176|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M72238|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AL833584|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AK314211|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001024912|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184813|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184815|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184816|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001205344|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001712|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X16356|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17##DQ891971|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##DQ895161|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##X52378|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK297012|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##BC026263|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##D90064|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##M33326|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK312652|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##NM_001816|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##M93061|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##S59493|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##DQ896462|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##EU176443|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##M34420|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##M37399|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##BC005924|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##NM_021016|PSG3|5671|pregnancy specific beta-1-glycoprotein 3##BC142628|PSG8|440533|pregnancy specific beta-1-glycoprotein 8##AK300230|PSG8|440533|pregnancy specific beta-1-glycoprotein 8##CR749812|PSG8|440533|pregnancy specific beta-1-glycoprotein 8##BC137500|PSG8|440533|pregnancy specific beta-1-glycoprotein 8##NM_001130167|PSG8|440533|pregnancy specific beta-1-glycoprotein 8##NM_001130168|PSG8|440533|pregnancy specific beta-1-glycoprotein 8##NM_182707|PSG8|440533|pregnancy specific beta-1-glycoprotein 8	0.984942	0.99848	CTCF.p2:-3:0.998	denovo_WM_7:27:0.810
chr4	3011166	3011275	reg1000754.p1	13.180	+	TSC_hg19_v1_chr4_+_2965297 AK292390 AK223581 NM_001004056 NM_001004057 NM_182982 BC110825 BC027597 BC039732 BC117320 U33054 U33055 U33056 AK293569 X97879 X97880 X97881 X98118 HQ258463 X75897	-45685	+	TSC_hg19_v1_chr4_-_2965155 AK292939	-46026	-	BC053635 TSC_hg19_v1_chr4_-_2965134 BC017358 NM_003703	-46097	-	L12392 TSC_hg19_v1_chr4_+_3076416 AB016794 NM_002111	65107	+	AK126094 NM_001042690	239546	+	TSC_hg19_v1_chr4_+_3294763 AK310999 BC028154	283540	+	AK292390|GRK4|2868|G protein-coupled receptor kinase 4##AK223581|GRK4|2868|G protein-coupled receptor kinase 4##NM_001004056|GRK4|2868|G protein-coupled receptor kinase 4##NM_001004057|GRK4|2868|G protein-coupled receptor kinase 4##NM_182982|GRK4|2868|G protein-coupled receptor kinase 4##BC027597|GRK4|2868|G protein-coupled receptor kinase 4##BC117320|GRK4|2868|G protein-coupled receptor kinase 4##U33054|GRK4|2868|G protein-coupled receptor kinase 4##U33055|GRK4|2868|G protein-coupled receptor kinase 4##U33056|GRK4|2868|G protein-coupled receptor kinase 4##X97879|GRK4|2868|G protein-coupled receptor kinase 4##X97880|GRK4|2868|G protein-coupled receptor kinase 4##X97881|GRK4|2868|G protein-coupled receptor kinase 4##X98118|GRK4|2868|G protein-coupled receptor kinase 4##HQ258463|GRK4|2868|G protein-coupled receptor kinase 4##X75897|GRK4|2868|G protein-coupled receptor kinase 4##AK292939|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##BC053635|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##BC017358|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##NM_003703|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##L12392|HTT|3064|huntingtin##AB016794|HTT|3064|huntingtin##NM_002111|HTT|3064|huntingtin##AK126094|C4orf44|345222|chromosome 4 open reading frame 44##NM_001042690|C4orf44|345222|chromosome 4 open reading frame 44##AK310999|RGS12|6002|regulator of G-protein signaling 12##BC028154|RGS12|6002|regulator of G-protein signaling 12	0.994629	0.0	
chr3	36942349	36942529	reg1000570.p2	13.179	+	NM_033403	-161088	-	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	-520387	+	BC017805 NM_198399 BC066651 BC036548	-1219980	+	TSC_hg19_v1_chr3_-_36986546 NM_014831	44131	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	92132	-	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	92262	-	NM_033403|DCLK3|85443|doublecortin-like kinase 3##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1	1.389704	0.0	denovo_WM_7:-73:0.403
chr14	104038482	104038589	reg1000645.p1	13.174	+	TSC_hg19_v1_chr14_+_104029325 AK299527 NM_032374 AK223092 AK223103 BC007412	-9224	+	TSC_hg19_v1_chr14_-_104028984 AB020680 NM_001015048	-9474	-	AK291312 AK225741 TSC_hg19_v1_chr14_-_104028604 BC044216 AF095195 AK225730 BC050551 NM_001015049 NM_004873	-9920	-	TSC_hg19_v1_chr14_+_104095547 NM_001130107 NM_005552 NM_182923 AK294508 BC008881 L04733 AF527736 AY180164	57116	+	AK124498 TSC_hg19_v1_chr14_-_104178577	139973	-	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	143248	-	NM_032374|APOPT1|84334|apoptogenic 1##AK223092|APOPT1|84334|apoptogenic 1##AK223103|APOPT1|84334|apoptogenic 1##BC007412|APOPT1|84334|apoptogenic 1##AB020680|BAG5|9529|BCL2-associated athanogene 5##NM_001015048|BAG5|9529|BCL2-associated athanogene 5##AK291312|BAG5|9529|BCL2-associated athanogene 5##AK225741|BAG5|9529|BCL2-associated athanogene 5##BC044216|BAG5|9529|BCL2-associated athanogene 5##AF095195|BAG5|9529|BCL2-associated athanogene 5##AK225730|BAG5|9529|BCL2-associated athanogene 5##BC050551|BAG5|9529|BCL2-associated athanogene 5##NM_001015049|BAG5|9529|BCL2-associated athanogene 5##NM_004873|BAG5|9529|BCL2-associated athanogene 5##NM_001130107|KLC1|3831|kinesin light chain 1##NM_005552|KLC1|3831|kinesin light chain 1##NM_182923|KLC1|3831|kinesin light chain 1##AK294508|KLC1|3831|kinesin light chain 1##BC008881|KLC1|3831|kinesin light chain 1##L04733|KLC1|3831|kinesin light chain 1##AF527736|KLC1|3831|kinesin light chain 1##AY180164|KLC1|3831|kinesin light chain 1##AK124498|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3	0.988634	0.79551	CTCF.p2:-11:0.796	denovo_WM_7:-62:0.501	denovo_WM_7:-65:0.334
chr2	88899825	88899948	reg1000573.p1	13.167	+	AK058098 NM_152670 BC029522	-75702	+	NM_001135649	-147834	-	NM_018271 BC050699 BC035315 AK001778	-427130	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	27092	-	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	91329	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	165515	+	AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##NM_001135649|FOXI3|344167|forkhead box I3##NM_018271|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC050699|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC035315|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK001778|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.0	0.0	
chr1	150552071	150552178	reg1000597.p1	13.163	+	TSC_hg19_v1_chr1_-_150552077 AK316267 AK297217 AK304775 AK312508	-43	-	AB385142 AF203373 BT006640 CU677857 DQ890628 DQ893795 FJ917536 TSC_hg19_v1_chr1_-_150552076 AF118124 BC017197 BC071897 L08246 AK300499 BC107735 AK294462	-84	-	TSC_hg19_v1_chr1_+_150521883 AF289612 NM_019032 NM_025008	-30270	+	TSC_hg19_v1_chr1_-_150552129 NM_001197320 NM_021960 NM_182763	46	-	TSC_hg19_v1_chr1_-_150587883 AK124918	35795	-	TSC_hg19_v1_chr1_-_150601610 AK290064 NM_207045 NM_207046 NM_207047	49458	-	AK316267|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK297217|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK304775|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK312508|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AF203373|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BT006640|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ890628|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ893795|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##FJ917536|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AF118124|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC017197|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC071897|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##L08246|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK300499|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC107735|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK294462|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AF289612|ADAMTSL4|54507|ADAMTS-like 4##NM_019032|ADAMTSL4|54507|ADAMTS-like 4##NM_025008|ADAMTSL4|54507|ADAMTS-like 4##NM_001197320|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_021960|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_182763|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK290064|ENSA|2029|endosulfine alpha##NM_207045|ENSA|2029|endosulfine alpha##NM_207046|ENSA|2029|endosulfine alpha##NM_207047|ENSA|2029|endosulfine alpha	0.0	0.0	
chr14	91639575	91639684	reg1000441.p1	13.162	+	TSC_hg19_v1_chr14_+_91581017 NM_001102367 BX248060 BC010614 AY358516	-58602	+	AK123532 TSC_hg19_v1_chr14_+_91580717 BC065558 BX248782 AK091394 AK022564	-58880	+	TSC_hg19_v1_chr14_+_91580472 AK023200	-59117	+	BC128536 NM_001177676	71222	-	BC098567 NM_003485	80565	-	TSC_hg19_v1_chr14_-_91884159 AF070587	244519	-	NM_001102367|C14orf159|80017|chromosome 14 open reading frame 159##BX248060|C14orf159|80017|chromosome 14 open reading frame 159##BC010614|C14orf159|80017|chromosome 14 open reading frame 159##AY358516|C14orf159|80017|chromosome 14 open reading frame 159##AK123532|C14orf159|80017|chromosome 14 open reading frame 159##BC065558|C14orf159|80017|chromosome 14 open reading frame 159##BX248782|C14orf159|80017|chromosome 14 open reading frame 159##AK091394|C14orf159|80017|chromosome 14 open reading frame 159##AK022564|C14orf159|80017|chromosome 14 open reading frame 159##AK023200|C14orf159|80017|chromosome 14 open reading frame 159##BC128536|GPR68|8111|G protein-coupled receptor 68##NM_001177676|GPR68|8111|G protein-coupled receptor 68##BC098567|GPR68|8111|G protein-coupled receptor 68##NM_003485|GPR68|8111|G protein-coupled receptor 68##AF070587|CCDC88C|440193|coiled-coil domain containing 88C	0.997264	0.999714	denovo_WM_7:-9:0.976	CTCF.p2:46:1.000
chr2	216432302	216432465	reg1000739.p1	13.161	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-131601	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-131863	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-142411	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	445953	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	514161	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	514309	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.993338	0.0	denovo_WM_7:-21:0.813
chr6_qbl_hap6	3885682	3885838	reg1000331.p1	13.157	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.594587	0.0	denovo_WM_7:97:0.224
chr12	83398455	83398625	reg1000683.p2	13.156	+	TSC_hg19_v1_chr12_+_83081158 AK299771 BC093852 BC143378 BC093854 AK315285 AB463319 AM393141	-317279	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	-317623	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	-317840	+	AK291207 AK022853 TSC_hg19_v1_chr12_-_85306547	1908003	-	TSC_hg19_v1_chr12_-_85306575 BC022253 BC070040	1908032	-	AK294945 TSC_hg19_v1_chr12_-_85306581 NM_001146335 NM_018057 NM_182767	1908052	-	AK299771|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093852|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC143378|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093854|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK315285|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AM393141|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK291207|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##AK022853|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##BC022253|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##BC070040|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##AK294945|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_001146335|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_018057|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_182767|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15	2.976099	0.060029	denovo_WM_7:0:0.969	denovo_WM_7:-15:0.951	denovo_WM_7:-30:0.933
chr12	12850024	12850204	reg1000618.p4	13.146	+	AK096388 NM_006143	-994	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-85231	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-85319	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	20012	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	28742	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	88463	+	AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1	0.999439	0.0	
chr1	160413567	160413677	reg1000576.p1	13.140	+	NM_020335 TSC_hg19_v1_chr1_+_160370394	-43243	+	M96739 AK313700 NM_005598 BC013789	-76758	+	NM_001098398 NM_004371 U24105	-100219	-	AB590474 AJ306388 AJ277141 AK313549 BC113893 BC114495 AK310085 AL832854 BC090928 AK300013 AK301026 AY358159 TSC_hg19_v1_chr1_-_160493043 AK303990 AK125624 NM_001184714 NM_001184715 NM_001184716 NM_052931	79407	-	AB590277 CR541847 CU676492 DQ891708 DQ894872 BC020063 U82988 TSC_hg19_v1_chr1_-_160549268 AJ223324 AK296290 CR933666	135625	-	AK313496 TSC_hg19_v1_chr1_-_160549273 AF054815 AF054816 AF054817 AF054818 U96627 Y12632 NM_001184879 NM_001184881 NM_001184882 NM_003874	135666	-	NM_020335|VANGL2|57216|vang-like 2 (van gogh, Drosophila)##M96739|NHLH1|4807|nescient helix loop helix 1##AK313700|NHLH1|4807|nescient helix loop helix 1##NM_005598|NHLH1|4807|nescient helix loop helix 1##BC013789|NHLH1|4807|nescient helix loop helix 1##NM_001098398|COPA|1314|coatomer protein complex, subunit alpha##NM_004371|COPA|1314|coatomer protein complex, subunit alpha##U24105|COPA|1314|coatomer protein complex, subunit alpha##AJ306388|SLAMF6|114836|SLAM family member 6##AJ277141|SLAMF6|114836|SLAM family member 6##AK313549|SLAMF6|114836|SLAM family member 6##BC113893|SLAMF6|114836|SLAM family member 6##BC114495|SLAMF6|114836|SLAM family member 6##AK310085|SLAMF6|114836|SLAM family member 6##AL832854|SLAMF6|114836|SLAM family member 6##BC090928|SLAMF6|114836|SLAM family member 6##AK300013|SLAMF6|114836|SLAM family member 6##AK301026|SLAMF6|114836|SLAM family member 6##AY358159|SLAMF6|114836|SLAM family member 6##AK303990|SLAMF6|114836|SLAM family member 6##AK125624|SLAMF6|114836|SLAM family member 6##NM_001184714|SLAMF6|114836|SLAM family member 6##NM_001184715|SLAMF6|114836|SLAM family member 6##NM_001184716|SLAMF6|114836|SLAM family member 6##NM_052931|SLAMF6|114836|SLAM family member 6##CR541847|CD84|8832|CD84 molecule##DQ891708|CD84|8832|CD84 molecule##DQ894872|CD84|8832|CD84 molecule##BC020063|CD84|8832|CD84 molecule##U82988|CD84|8832|CD84 molecule##AJ223324|CD84|8832|CD84 molecule##AK296290|CD84|8832|CD84 molecule##CR933666|CD84|8832|CD84 molecule##AK313496|CD84|8832|CD84 molecule##AF054815|CD84|8832|CD84 molecule##AF054816|CD84|8832|CD84 molecule##AF054817|CD84|8832|CD84 molecule##AF054818|CD84|8832|CD84 molecule##U96627|CD84|8832|CD84 molecule##Y12632|CD84|8832|CD84 molecule##NM_001184879|CD84|8832|CD84 molecule##NM_001184881|CD84|8832|CD84 molecule##NM_001184882|CD84|8832|CD84 molecule##NM_003874|CD84|8832|CD84 molecule	2.576049	0.0	denovo_WM_7:26:0.629	denovo_WM_7:-63:0.782	denovo_WM_7:-78:0.802
chr13	39396395	39396563	reg1000760.p2	13.119	+	NM_207361	-135307	+	TSC_hg19_v1_chr13_+_38923995 AK095490 AK307111 BC005193 Z70222 AF208844 AK309914 AB154404 CR457189	-472430	+	NM_016617 TSC_hg19_v1_chr13_+_38923946	-472528	+	DQ891676 EU176604 AK313632 BC025760 AK304159 NM_001144033 NM_145286	168447	-	TSC_hg19_v1_chr13_-_39612201 AK074360 AB107354	215722	-	TSC_hg19_v1_chr13_-_39612251 NM_025138 NM_170719	215774	-	NM_207361|FREM2|341640|FRAS1 related extracellular matrix protein 2##AK095490|UFM1|51569|ubiquitin-fold modifier 1##AK307111|UFM1|51569|ubiquitin-fold modifier 1##BC005193|UFM1|51569|ubiquitin-fold modifier 1##Z70222|UFM1|51569|ubiquitin-fold modifier 1##AF208844|UFM1|51569|ubiquitin-fold modifier 1##AK309914|UFM1|51569|ubiquitin-fold modifier 1##AB154404|UFM1|51569|ubiquitin-fold modifier 1##CR457189|UFM1|51569|ubiquitin-fold modifier 1##NM_016617|UFM1|51569|ubiquitin-fold modifier 1##DQ891676|STOML3|161003|stomatin (EPB72)-like 3##EU176604|STOML3|161003|stomatin (EPB72)-like 3##AK313632|STOML3|161003|stomatin (EPB72)-like 3##BC025760|STOML3|161003|stomatin (EPB72)-like 3##AK304159|STOML3|161003|stomatin (EPB72)-like 3##NM_001144033|STOML3|161003|stomatin (EPB72)-like 3##NM_145286|STOML3|161003|stomatin (EPB72)-like 3##AK074360|PROSER1|80209|proline and serine rich 1##AB107354|PROSER1|80209|proline and serine rich 1##NM_025138|PROSER1|80209|proline and serine rich 1##NM_170719|PROSER1|80209|proline and serine rich 1	1.871456	0.0	denovo_WM_7:8:0.815	denovo_WM_7:23:0.823
chr3	148673417	148673541	reg1000643.p1	13.118	+	NM_001870 AK313628 BC012613 DQ892805 DQ896052 CU680374 M27717	-90411	+	NM_001871 M81057 AK313940 AJ224866 BC015338 DQ890547 DQ893706 BT009910	-127881	+	NM_032049	-225513	+	TSC_hg19_v1_chr3_+_148709140 NM_001184720 NM_001184721 NM_004130	35688	+	TSC_hg19_v1_chr3_+_148709326 AK299962 BC000033 X79537 AK312283 AF087942 U44131	35856	+	AB209052 EU446704 TSC_hg19_v1_chr3_-_148804298 AK291231 L34673 BC015498 BC005260 BC044659 BC014326 BC030976 NM_003071 NM_139048	130783	-	NM_001870|CPA3|1359|carboxypeptidase A3 (mast cell)##AK313628|CPA3|1359|carboxypeptidase A3 (mast cell)##BC012613|CPA3|1359|carboxypeptidase A3 (mast cell)##DQ892805|CPA3|1359|carboxypeptidase A3 (mast cell)##DQ896052|CPA3|1359|carboxypeptidase A3 (mast cell)##M27717|CPA3|1359|carboxypeptidase A3 (mast cell)##NM_001871|CPB1|1360|carboxypeptidase B1 (tissue)##M81057|CPB1|1360|carboxypeptidase B1 (tissue)##AK313940|CPB1|1360|carboxypeptidase B1 (tissue)##AJ224866|CPB1|1360|carboxypeptidase B1 (tissue)##BC015338|CPB1|1360|carboxypeptidase B1 (tissue)##DQ890547|CPB1|1360|carboxypeptidase B1 (tissue)##DQ893706|CPB1|1360|carboxypeptidase B1 (tissue)##BT009910|CPB1|1360|carboxypeptidase B1 (tissue)##NM_032049|AGTR1|185|angiotensin II receptor, type 1##NM_001184720|GYG1|2992|glycogenin 1##NM_001184721|GYG1|2992|glycogenin 1##NM_004130|GYG1|2992|glycogenin 1##AK299962|GYG1|2992|glycogenin 1##BC000033|GYG1|2992|glycogenin 1##X79537|GYG1|2992|glycogenin 1##AK312283|GYG1|2992|glycogenin 1##AF087942|GYG1|2992|glycogenin 1##U44131|GYG1|2992|glycogenin 1##AB209052|HLTF|6596|helicase-like transcription factor##EU446704|HLTF|6596|helicase-like transcription factor##AK291231|HLTF|6596|helicase-like transcription factor##L34673|HLTF|6596|helicase-like transcription factor##BC015498|HLTF|6596|helicase-like transcription factor##BC005260|HLTF|6596|helicase-like transcription factor##BC044659|HLTF|6596|helicase-like transcription factor##BC014326|HLTF|6596|helicase-like transcription factor##BC030976|HLTF|6596|helicase-like transcription factor##NM_003071|HLTF|6596|helicase-like transcription factor##NM_139048|HLTF|6596|helicase-like transcription factor	0.998172	0.932746	CTCF.p2:-28:0.933
chr11	118797160	118797314	reg1000568.p1	13.117	+	AB094091 NM_182557	-15625	-	NM_032966 X68829	-33137	+	AK291512 NM_001716 BC110352 X68149 AB464488	-42677	+	NM_006760 Y13645 BC113900 AY455312 AB009454	29826	+	AB094092 NM_181721 BC028191 BC125040 BC038969	45241	+	TSC_hg19_v1_chr11_+_118868847 AB094093 NM_198489	71612	+	AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2##AB094092|FOXR1|283150|forkhead box R1##NM_181721|FOXR1|283150|forkhead box R1##BC028191|FOXR1|283150|forkhead box R1##BC125040|FOXR1|283150|forkhead box R1##BC038969|FOXR1|283150|forkhead box R1##AB094093|CCDC84|338657|coiled-coil domain containing 84##NM_198489|CCDC84|338657|coiled-coil domain containing 84	0.864568	0.0	denovo_WM_7:76:0.586
chr10	76437824	76437965	reg1000483.p1	13.116	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-501307	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-501364	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-501412	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	148460	+	AY686755 NM_001003892 BC137321 BC137322	380411	-	AB027004 AB103375 NM_016364	421353	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.996344	0.0	denovo_WM_7:15:0.313	denovo_WM_7:16:0.313	denovo_WM_7:17:0.313
chr7	95319954	95320134	reg1000476.p2	13.116	+	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	-94181	-	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	-204751	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-255683	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	81864	+	CU675453 DQ892851 DQ896098 Y17571 AK294629 TSC_hg19_v1_chr7_-_95951381 BC006566 AJ496569 AK000766 AK222864 AF118838 NM_001160210 NM_014251	631358	-	BC140736 BC171740 AK124274 NM_001201450 NM_001201451	812783	-	BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##DQ892851|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##DQ896098|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##Y17571|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK294629|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC006566|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AJ496569|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK000766|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK222864|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AF118838|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_001160210|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_014251|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC140736|FLJ42280|401388|putative uncharacterized protein FLJ42280##BC171740|FLJ42280|401388|putative uncharacterized protein FLJ42280##AK124274|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201450|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201451|FLJ42280|401388|putative uncharacterized protein FLJ42280	1.032484	0.227027	CTCF.p2:8:0.227	denovo_WM_7:40:0.637
chr19	45622153	45622289	reg1000740.p2	13.115	+	TSC_hg19_v1_chr19_+_45596436 NM_019121	-25799	+	TSC_hg19_v1_chr19_+_45596205 BC035704	-26006	+	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	-39708	+	NM_198478	41186	-	TSC_hg19_v1_chr19_-_45681496 FJ418644 BC001907 NM_024108 BC004450 AF161407	59257	-	NM_212550 AK296695 TSC_hg19_v1_chr19_+_45682022	59792	+	NM_019121|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_198478|NKPD1|284353|NTPase, KAP family P-loop domain containing 1##FJ418644|TRAPPC6A|79090|trafficking protein particle complex 6A##BC001907|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_024108|TRAPPC6A|79090|trafficking protein particle complex 6A##BC004450|TRAPPC6A|79090|trafficking protein particle complex 6A##AF161407|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_212550|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3##AK296695|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3	1.720834	0.0	denovo_WM_7:3:0.398	denovo_WM_7:4:0.591	denovo_WM_7:26:0.535
chr21	34611001	34611163	reg1000743.p1	13.113	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	-8680	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	-8803	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	-8862	+	TSC_hg19_v1_chr21_+_34638697 AK313348 NM_000628 BC001903 Z17227	27619	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	27672	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	86136	+	BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##AK313348|IL10RB|3588|interleukin 10 receptor, beta##NM_000628|IL10RB|3588|interleukin 10 receptor, beta##BC001903|IL10RB|3588|interleukin 10 receptor, beta##Z17227|IL10RB|3588|interleukin 10 receptor, beta##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1	0.996106	0.0	denovo_WM_7:4:0.928
chr17	266813	266944	reg1000681.p1	13.104	+	TSC_hg19_v1_chr17_+_260159 AK128660 NM_001013672 BC141806 BC057385 BC070116 CU687042	-6698	+	TSC_hg19_v1_chr17_-_202619 NM_001190411 NM_001190412 NM_001190413 NM_006987	-64254	-	TSC_hg19_v1_chr17_-_202589 AK000469 AK291950	-64298	-	CU675257 EU021218 EU434648 EU434649 EU434650 AF246287 AY444797 BC006116 TSC_hg19_v1_chr17_-_618080 BC040223 AF318335 AK290343 AK092532 AX747587 NM_001128159 NM_018289	351161	-	TSC_hg19_v1_chr17_+_635806 AF477201 BC026023 AK025935 AK292065 NM_024792 CU693104 AK125146	368908	+	TSC_hg19_v1_chr17_-_655412 AB463052 AF173856 BC036024 AK302722 BC032084 BC020062	388542	-	AK128660|C17orf97|400566|chromosome 17 open reading frame 97##NM_001013672|C17orf97|400566|chromosome 17 open reading frame 97##BC141806|C17orf97|400566|chromosome 17 open reading frame 97##BC057385|C17orf97|400566|chromosome 17 open reading frame 97##BC070116|C17orf97|400566|chromosome 17 open reading frame 97##NM_001190411|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_001190412|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_001190413|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_006987|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##AK000469|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##AK291950|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##EU021218|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434648|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434649|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434650|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF246287|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AY444797|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##BC006116|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##BC040223|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF318335|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK290343|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK092532|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##NM_001128159|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##NM_018289|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF477201|FAM57A|79850|family with sequence similarity 57, member A##BC026023|FAM57A|79850|family with sequence similarity 57, member A##AK025935|FAM57A|79850|family with sequence similarity 57, member A##AK292065|FAM57A|79850|family with sequence similarity 57, member A##NM_024792|FAM57A|79850|family with sequence similarity 57, member A##AK125146|FAM57A|79850|family with sequence similarity 57, member A##AF173856|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC036024|GEMIN4|50628|gem (nuclear organelle) associated protein 4##AK302722|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC032084|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC020062|GEMIN4|50628|gem (nuclear organelle) associated protein 4	1.987894	0.0	denovo_WM_7:44:0.657	denovo_WM_7:45:0.312	denovo_WM_7:61:0.449	denovo_WM_7:62:0.457
chr1	212740462	212740617	reg1000639.p1	13.101	+	NM_001030287	-1864	+	TSC_hg19_v1_chr1_+_212606264 AF173937 NM_013349 AK074431 AK223135 AY762102 BC008823 AB126219 AF049672	-134227	+	TSC_hg19_v1_chr1_-_212588248 AK297200 NM_001198862 AK024066 NM_018252	-152287	-	NM_001040619 NM_001206484 NM_001206488 NM_001674 TSC_hg19_v1_chr1_+_212782102 AK294296	41496	+	AK312998 TSC_hg19_v1_chr1_+_212782105 BC006322 L19871	41568	+	NM_001206486 AB066566 AB078026 AB078027 AB528347 AY313926 AY313927 BT006996 CR450334 DQ892723 DQ895972 AB209032	47868	+	NM_001030287|ATF3|467|activating transcription factor 3##AF173937|NENF|29937|neudesin neurotrophic factor##NM_013349|NENF|29937|neudesin neurotrophic factor##AK074431|NENF|29937|neudesin neurotrophic factor##AK223135|NENF|29937|neudesin neurotrophic factor##AY762102|NENF|29937|neudesin neurotrophic factor##BC008823|NENF|29937|neudesin neurotrophic factor##AB126219|NENF|29937|neudesin neurotrophic factor##AF049672|NENF|29937|neudesin neurotrophic factor##AK297200|TMEM206|55248|transmembrane protein 206##NM_001198862|TMEM206|55248|transmembrane protein 206##AK024066|TMEM206|55248|transmembrane protein 206##NM_018252|TMEM206|55248|transmembrane protein 206##NM_001040619|ATF3|467|activating transcription factor 3##NM_001206484|ATF3|467|activating transcription factor 3##NM_001206488|ATF3|467|activating transcription factor 3##NM_001674|ATF3|467|activating transcription factor 3##AK294296|ATF3|467|activating transcription factor 3##AK312998|ATF3|467|activating transcription factor 3##BC006322|ATF3|467|activating transcription factor 3##L19871|ATF3|467|activating transcription factor 3##NM_001206486|ATF3|467|activating transcription factor 3##AB066566|ATF3|467|activating transcription factor 3##AB078026|ATF3|467|activating transcription factor 3##AB078027|ATF3|467|activating transcription factor 3##AY313926|ATF3|467|activating transcription factor 3##AY313927|ATF3|467|activating transcription factor 3##BT006996|ATF3|467|activating transcription factor 3##CR450334|ATF3|467|activating transcription factor 3##DQ892723|ATF3|467|activating transcription factor 3##DQ895972|ATF3|467|activating transcription factor 3##AB209032|ATF3|467|activating transcription factor 3	1.83735	0.0	denovo_WM_7:-31:0.878	denovo_WM_7:-56:0.839
chr18	20804451	20804563	reg1000651.p1	13.100	+	BC037218 NM_138375	-68719	+	EF028204 NM_001100619	-88781	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-290692	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	213364	-	AK057292 NM_003831	228279	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	228739	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.999715	0.0	
chr3	125308725	125308854	reg1000677.p1	13.094	+	TSC_hg19_v1_chr3_-_125239050 NM_003794	-69736	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	-69758	-	AF039019 AL833616 AF432210 AJ236885 L04282 BC035591 BC018971 AK314203 TSC_hg19_v1_chr3_-_125094153 BC050260 NM_021964	-214689	-	TSC_hg19_v1_chr3_-_125314371 NM_022776	5584	-	TSC_hg19_v1_chr3_+_125635451 BC032772 BC041080	326667	+	BC073816 NM_001015050 NM_001195223	347094	-	NM_003794|SNX4|8723|sorting nexin 4##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##AF039019|ZNF148|7707|zinc finger protein 148##AL833616|ZNF148|7707|zinc finger protein 148##AF432210|ZNF148|7707|zinc finger protein 148##AJ236885|ZNF148|7707|zinc finger protein 148##L04282|ZNF148|7707|zinc finger protein 148##BC035591|ZNF148|7707|zinc finger protein 148##BC018971|ZNF148|7707|zinc finger protein 148##AK314203|ZNF148|7707|zinc finger protein 148##BC050260|ZNF148|7707|zinc finger protein 148##NM_021964|ZNF148|7707|zinc finger protein 148##NM_022776|OSBPL11|114885|oxysterol binding protein-like 11##BC032772|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC041080|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC073816|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001015050|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001195223|ALG1L|200810|asparagine-linked glycosylation 1-like	0.0	0.0	
chr16	52526766	52526916	reg1000703.p2	13.093	+	NM_001242473	-418995	-	BC113881 BC113906 BC131548 Y18265 TSC_hg19_v1_chr16_-_51185251 AK295103 NM_002968	-1341429	-	AK307835 NM_001127892	-1342334	-	NM_001080430	53964	-	AK299202 NM_001146188	54872	-	TSC_hg19_v1_chr16_+_53088951 AY647157 BC022889 NM_025134	562040	+	NM_001242473|LOC388276|388276|hCG2045437##BC113881|SALL1|6299|sal-like 1 (Drosophila)##BC113906|SALL1|6299|sal-like 1 (Drosophila)##BC131548|SALL1|6299|sal-like 1 (Drosophila)##Y18265|SALL1|6299|sal-like 1 (Drosophila)##AK295103|SALL1|6299|sal-like 1 (Drosophila)##NM_002968|SALL1|6299|sal-like 1 (Drosophila)##AK307835|SALL1|6299|sal-like 1 (Drosophila)##NM_001127892|SALL1|6299|sal-like 1 (Drosophila)##NM_001080430|TOX3|27324|TOX high mobility group box family member 3##AK299202|TOX3|27324|TOX high mobility group box family member 3##NM_001146188|TOX3|27324|TOX high mobility group box family member 3##AY647157|CHD9|80205|chromodomain helicase DNA binding protein 9##BC022889|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_025134|CHD9|80205|chromodomain helicase DNA binding protein 9	0.9971	0.0	denovo_WM_7:-22:0.841
chr17	38755400	38755564	reg1000691.p1	13.092	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-33764	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-97636	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-155663	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	48588	-	BC069196 TSC_hg19_v1_chr17_-_38804818	49314	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	65868	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	1.227137	0.0	denovo_WM_7:-36:0.758	denovo_WM_7:78:0.301
chr12	133346782	133346952	reg1000819.p1	13.085	+	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-8447	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-40309	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	-59431	+	BC048203 TSC_hg19_v1_chr12_-_133372555	25690	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	58112	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	58431	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3	0.993792	0.0	denovo_WM_7:-37:0.248	denovo_WM_7:-38:0.248	denovo_WM_7:-39:0.248	denovo_WM_7:-40:0.248
chr2	157383899	157384052	reg1000443.p2	13.082	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-91021	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-91109	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-91741	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	730318	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	798309	-	NM_001009959 AK296477	800181	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	0.0	0.0	
chr19	7445531	7445665	reg1000753.p1	13.076	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-151638	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-346047	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-375883	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	14409	+	TSC_hg19_v1_chr19_+_7460061 AB011093	14479	+	AK127045 NM_001130955	58975	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.987881	0.998839	denovo_WM_7:-16:0.597	denovo_WM_7:-17:0.293	CTCF.p2:40:0.999
chr20	46102313	46102441	reg1000700.p1	13.074	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-116889	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-125730	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-174808	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	28245	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	28307	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	312375	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.994754	0.0	denovo_WM_7:-74:0.311	denovo_WM_7:-75:0.201
chr12	105360629	105360772	reg1000644.p1	13.071	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	-38437	-	TSC_hg19_v1_chr12_+_105153261 AF131762	-207423	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-509613	+	TSC_hg19_v1_chr12_+_105380107 NM_152318	19390	+	TSC_hg19_v1_chr12_+_105380115 BC032326 CU689336 DQ891649 DQ894838	19421	+	TSC_hg19_v1_chr12_-_105478356 EU832777 GQ129303 AK095827 AK300373 BC103934 BC103935 NM_001034173	117615	-	AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45##BC032326|C12orf45|121053|chromosome 12 open reading frame 45##DQ891649|C12orf45|121053|chromosome 12 open reading frame 45##DQ894838|C12orf45|121053|chromosome 12 open reading frame 45##EU832777|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##GQ129303|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##AK095827|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##AK300373|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##BC103934|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##BC103935|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##NM_001034173|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2	0.990663	0.0	denovo_WM_7:16:0.216	denovo_WM_7:18:0.678
chr11	68108443	68108586	reg1000621.p1	13.067	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-28425	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-69056	-	TSC_hg19_v1_chr11_-_68039418 AF264781	-69128	-	AF088027 TSC_hg19_v1_chr11_+_68115450	6922	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	119695	+	AK001920 TSC_hg19_v1_chr11_+_68367929	259362	+	AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3	0.992037	0.0	
chr8	28727739	28727918	reg1000765.p1	13.059	+	TSC_hg19_v1_chr8_+_28559149 AF001690 AB007042 AF083551 NM_001440	-168678	+	TSC_hg19_v1_chr8_+_28559032 AB011091	-168753	+	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	-376063	+	TSC_hg19_v1_chr8_-_28747454 BC016687 AK225072 AK304525 AK298468 NM_001172562 BC025267 AK300593 AK295977 AK001733 AK225530	19632	-	NM_001145159 NM_018250	19869	-	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	20089	+	AF001690|EXTL3|2137|exostoses (multiple)-like 3##AB007042|EXTL3|2137|exostoses (multiple)-like 3##AF083551|EXTL3|2137|exostoses (multiple)-like 3##NM_001440|EXTL3|2137|exostoses (multiple)-like 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##BC016687|INTS9|55756|integrator complex subunit 9##AK225072|INTS9|55756|integrator complex subunit 9##AK304525|INTS9|55756|integrator complex subunit 9##AK298468|INTS9|55756|integrator complex subunit 9##NM_001172562|INTS9|55756|integrator complex subunit 9##BC025267|INTS9|55756|integrator complex subunit 9##AK300593|INTS9|55756|integrator complex subunit 9##AK295977|INTS9|55756|integrator complex subunit 9##AK001733|INTS9|55756|integrator complex subunit 9##AK225530|INTS9|55756|integrator complex subunit 9##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1	1.997325	0.0	denovo_WM_7:15:0.880
chr12	4378819	4378970	reg1000554.p2	13.054	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-396394	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-516512	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-516626	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	4150	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	51497	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	109906	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	0.870387	0.0	denovo_WM_7:-6:0.260
chr6	42714012	42714127	reg1000719.p1	13.044	+	TSC_hg19_v1_chr6_-_42713837 NM_003192	-194	-	TSC_hg19_v1_chr6_-_42713833 BC020170 AK312681 U61234	-241	-	TSC_hg19_v1_chr6_-_42713800 BT007002	-273	-	TSC_hg19_v1_chr6_-_42714549 BC017479	483	-	TSC_hg19_v1_chr6_+_42714735 D87077	674	+	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	35628	+	NM_003192|TBCC|6903|tubulin folding cofactor C##BC020170|TBCC|6903|tubulin folding cofactor C##AK312681|TBCC|6903|tubulin folding cofactor C##U61234|TBCC|6903|tubulin folding cofactor C##BT007002|TBCC|6903|tubulin folding cofactor C##BC017479|TBCC|6903|tubulin folding cofactor C##D87077|KIAA0240|23506|KIAA0240##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240	0.040629	0.0	
chr9	102574068	102574191	reg1000717.p1	13.041	+	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-589542	+	TSC_hg19_v1_chr9_-_101984233 NM_033087	-589886	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	-589912	-	TSC_hg19_v1_chr9_-_102582187 AK057451	8036	-	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	10028	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	94798	+	AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17	0.221072	0.0	denovo_WM_7:1:0.209
chr4	152038654	152038790	reg1000900.p1	13.035	+	TSC_hg19_v1_chr4_+_152020753 NM_001006 BC001708 M84711 AK308947 BC070211 AK291075 AK296121 BC066926 D28374 AK129825 AK311788 M77234 BC009404 BC018954 BC000204 BC004981 BC009219 BC017123 BC071916 L13802 BC006298 DQ891143 DQ894322 AB464167 CU688198	-17955	+	TSC_hg19_v1_chr4_-_151936880 AK098039	-101832	-	AF216648 NM_006726	-102074	-	X75686 BC108890 BC108891 BC108892 BC108893 NM_001128924	57957	-	BC032404 BX647422 NM_001009555 NM_001128923	108867	-	TSC_hg19_v1_chr4_-_152149045 AK294476 NM_001243349	110389	-	NM_001006|RPS3A|6189|ribosomal protein S3A##BC001708|RPS3A|6189|ribosomal protein S3A##M84711|RPS3A|6189|ribosomal protein S3A##AK308947|RPS3A|6189|ribosomal protein S3A##BC070211|RPS3A|6189|ribosomal protein S3A##AK291075|RPS3A|6189|ribosomal protein S3A##BC066926|RPS3A|6189|ribosomal protein S3A##D28374|RPS3A|6189|ribosomal protein S3A##AK129825|RPS3A|6189|ribosomal protein S3A##AK311788|RPS3A|6189|ribosomal protein S3A##M77234|RPS3A|6189|ribosomal protein S3A##BC009404|RPS3A|6189|ribosomal protein S3A##BC018954|RPS3A|6189|ribosomal protein S3A##BC000204|RPS3A|6189|ribosomal protein S3A##BC004981|RPS3A|6189|ribosomal protein S3A##BC009219|RPS3A|6189|ribosomal protein S3A##BC017123|RPS3A|6189|ribosomal protein S3A##BC071916|RPS3A|6189|ribosomal protein S3A##L13802|RPS3A|6189|ribosomal protein S3A##BC006298|RPS3A|6189|ribosomal protein S3A##DQ891143|RPS3A|6189|ribosomal protein S3A##DQ894322|RPS3A|6189|ribosomal protein S3A##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC108890|SH3D19|152503|SH3 domain containing 19##BC108891|SH3D19|152503|SH3 domain containing 19##BC108892|SH3D19|152503|SH3 domain containing 19##BC108893|SH3D19|152503|SH3 domain containing 19##NM_001128924|SH3D19|152503|SH3 domain containing 19##BC032404|SH3D19|152503|SH3 domain containing 19##BX647422|SH3D19|152503|SH3 domain containing 19##NM_001009555|SH3D19|152503|SH3 domain containing 19##NM_001128923|SH3D19|152503|SH3 domain containing 19##AK294476|SH3D19|152503|SH3 domain containing 19##NM_001243349|SH3D19|152503|SH3 domain containing 19	0.933662	0.166757	denovo_WM_7:19:0.934
chr7	66386105	66386235	reg1000696.p1	13.034	+	TSC_hg19_v1_chr7_+_66205719 AJ250042 AK223329 AK290678	-180440	+	TSC_hg19_v1_chr7_+_66205692 BC015330	-180476	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	-180526	+	TSC_hg19_v1_chr7_+_66386215 AK222774 NM_017994 BC012562 AK000961 BC008675	6	+	TSC_hg19_v1_chr7_+_66386228 BC041764	61	+	TSC_hg19_v1_chr7_+_66386238 BC010519	101	+	AJ250042|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK223329|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK290678|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK222774|C7orf42|55069|chromosome 7 open reading frame 42##NM_017994|C7orf42|55069|chromosome 7 open reading frame 42##BC012562|C7orf42|55069|chromosome 7 open reading frame 42##AK000961|C7orf42|55069|chromosome 7 open reading frame 42##BC008675|C7orf42|55069|chromosome 7 open reading frame 42##BC041764|C7orf42|55069|chromosome 7 open reading frame 42##BC010519|C7orf42|55069|chromosome 7 open reading frame 42	0.992398	0.0	denovo_WM_7:32:0.479	denovo_WM_7:33:0.479
chr6	116731105	116731265	reg1000756.p1	13.025	+	TSC_hg19_v1_chr6_-_116692863 AK298559 AK316303	-38316	-	TSC_hg19_v1_chr6_+_116692109 NM_013352 AF098066	-39042	+	BC039245 NM_001080976 BC043526	-129864	+	NM_001010919	51370	+	BC032556 NM_153711 AK094140 AK315572	101636	+	AK300309 AY358252 NM_153036 BC057769 AK056801	119023	+	AK298559|LOC100287467|100287467|uncharacterized LOC100287467##AK316303|LOC100287467|100287467|uncharacterized LOC100287467##NM_013352|DSE|29940|dermatan sulfate epimerase##AF098066|DSE|29940|dermatan sulfate epimerase##BC039245|DSE|29940|dermatan sulfate epimerase##NM_001080976|DSE|29940|dermatan sulfate epimerase##BC043526|DSE|29940|dermatan sulfate epimerase##NM_001010919|FAM26F|441168|family with sequence similarity 26, member F##BC032556|FAM26E|254228|family with sequence similarity 26, member E##NM_153711|FAM26E|254228|family with sequence similarity 26, member E##AK094140|FAM26E|254228|family with sequence similarity 26, member E##AK315572|FAM26E|254228|family with sequence similarity 26, member E##AK300309|FAM26D|221301|family with sequence similarity 26, member D##AY358252|FAM26D|221301|family with sequence similarity 26, member D##NM_153036|FAM26D|221301|family with sequence similarity 26, member D##BC057769|FAM26D|221301|family with sequence similarity 26, member D##AK056801|FAM26D|221301|family with sequence similarity 26, member D	0.0	0.0	
chr4	153473387	153473547	reg1000833.p1	13.019	+	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-16034	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-17173	-	NM_001013415 AY008274	-169803	-	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	127733	-	BC037869 NM_145720	227436	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	227554	+	AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	0.986393	0.0	denovo_WM_7:-19:0.775
chr7	6413203	6413341	reg1000666.p2	13.019	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-24762	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-101041	-	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-268674	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	955	+	TSC_hg19_v1_chr7_-_6474593 AK298910	61318	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	74267	-	AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta	0.990736	0.0	denovo_WM_7:0:0.237	denovo_WM_7:0:0.237	denovo_WM_7:-1:0.237	denovo_WM_7:1:0.237
chr1	226862781	226862927	reg1000734.p1	13.018	+	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	-126237	+	AL137507 NM_001003665 TSC_hg19_v1_chr1_+_226736500	-126353	+	TSC_hg19_v1_chr1_-_226595798 NM_001618	-267051	-	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	64084	-	TSC_hg19_v1_chr1_+_227058316 NM_000447 NM_012486 AK292299 AK301143	195426	+	NM_020247 TSC_hg19_v1_chr1_+_227127955	265092	+	AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##AL137507|C1orf95|375057|chromosome 1 open reading frame 95##NM_001003665|C1orf95|375057|chromosome 1 open reading frame 95##NM_001618|PARP1|142|poly (ADP-ribose) polymerase 1##BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_000447|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_012486|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK292299|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK301143|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_020247|ADCK3|56997|aarF domain containing kinase 3	0.998566	0.0	
chr6	62860108	62860255	reg1001118.p1	13.017	+	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-4572502	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-5677766	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-5773110	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	135820	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	1169683	-	TSC_hg19_v1_chr6_+_64231650 CR749458	1371474	+	BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.999054	0.75914	CTCF.p2:-21:0.759	denovo_WM_7:33:0.849
chrY	1590706	1590829	reg1000449.p1	13.016	+	AK301844 NM_001173473	-68116	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-68966	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-129798	-	BC043610 GQ280263 NM_178129 AK126147	15271	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	69762	+	NM_004043 U11090	73580	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.106489	0.0	
chr17	31155533	31155660	reg1000626.p1	13.007	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-340836	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-340999	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-341525	+	CU688936 AB385376 AB018270 BC146763 NM_015194	48299	-	TSC_hg19_v1_chr17_-_31204141 AK127942	48527	-	TSC_hg19_v1_chr17_-_31204196 BC030602	48617	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	1.457572	0.0	denovo_WM_7:-39:0.260	denovo_WM_7:-54:0.348
chr5	77517889	77518045	reg1000954.p1	13.000	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-445835	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-583453	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-583538	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	72458	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	72510	-	TSC_hg19_v1_chr5_-_77590495 U81504	72525	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.912346	0.0	denovo_WM_7:-9:0.425	denovo_WM_7:-10:0.368
chr3	186739518	186739645	reg1000445.p1	12.994	+	U67847 TSC_hg19_v1_chr3_+_186714361	-25233	+	X17247 TSC_hg19_v1_chr3_+_186648632	-91004	+	TSC_hg19_v1_chr3_+_186648314 NM_173216 NM_173217	-91272	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	91	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	117675	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	175761	+	X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_173216|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_173217|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1	0.997822	0.0	
chr20	34483514	34483665	reg1000680.p1	12.992	+	TSC_hg19_v1_chr20_+_34359958 BC093405 NM_016436 BC062681 AF258787 AY134747 AK054597 BC150178 AF220416 AK314503 BC080598 BC015538 BC016948 BC048210 BC006415	-123644	+	TSC_hg19_v1_chr20_-_34330183 NM_001242599 NM_001242600 NM_004902 NM_184234	-153369	-	BX537770 TSC_hg19_v1_chr20_-_34330177	-153412	-	AB464702 AM392883 AM393129 CR457188 EU446495 TSC_hg19_v1_chr20_-_34542233	58646	-	TSC_hg19_v1_chr20_-_34542404 AF204271 BC000785 AF207829 NM_033630	58877	-	NM_016558	59691	-	BC093405|PHF20|51230|PHD finger protein 20##NM_016436|PHF20|51230|PHD finger protein 20##BC062681|PHF20|51230|PHD finger protein 20##AF258787|PHF20|51230|PHD finger protein 20##AY134747|PHF20|51230|PHD finger protein 20##AK054597|PHF20|51230|PHD finger protein 20##BC150178|PHF20|51230|PHD finger protein 20##AF220416|PHF20|51230|PHD finger protein 20##AK314503|PHF20|51230|PHD finger protein 20##BC080598|PHF20|51230|PHD finger protein 20##BC016948|PHF20|51230|PHD finger protein 20##BC048210|PHF20|51230|PHD finger protein 20##BC006415|PHF20|51230|PHD finger protein 20##NM_001242599|RBM39|9584|RNA binding motif protein 39##NM_001242600|RBM39|9584|RNA binding motif protein 39##NM_004902|RBM39|9584|RNA binding motif protein 39##NM_184234|RBM39|9584|RNA binding motif protein 39##BX537770|RBM39|9584|RNA binding motif protein 39##AM392883|SCAND1|51282|SCAN domain containing 1##AM393129|SCAND1|51282|SCAN domain containing 1##CR457188|SCAND1|51282|SCAN domain containing 1##EU446495|SCAND1|51282|SCAN domain containing 1##AF204271|SCAND1|51282|SCAN domain containing 1##BC000785|SCAND1|51282|SCAN domain containing 1##AF207829|SCAND1|51282|SCAN domain containing 1##NM_033630|SCAND1|51282|SCAN domain containing 1##NM_016558|SCAND1|51282|SCAN domain containing 1	0.998828	0.0	
chr16	21652099	21652225	reg1000730.p1	12.989	+	AF151839 TSC_hg19_v1_chr16_+_21611174	-41008	+	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	-41272	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-120410	-	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	11758	-	AJ223183 TSC_hg19_v1_chr16_-_21663991 NM_005849	11814	-	BC129993 NM_144672 BC129992	37673	+	AF151839|METTL9|51108|methyltransferase like 9##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6##AJ223183|IGSF6|10261|immunoglobulin superfamily, member 6##NM_005849|IGSF6|10261|immunoglobulin superfamily, member 6##BC129993|OTOA|146183|otoancorin##NM_144672|OTOA|146183|otoancorin##BC129992|OTOA|146183|otoancorin	1.598208	0.063403	denovo_WM_7:-51:0.435	denovo_WM_7:-65:0.247	denovo_WM_7:-66:0.681
chr1	153940083	153940264	reg1000596.p1	12.988	+	BC047288 BC069261 TSC_hg19_v1_chr1_-_153936009 BC007886 BC002563 AJ243649 AJ271671 AK293389 AK297983 AK300244 AK075257	-4175	-	CR457217 DQ893619 DQ895350 CU675849 CU678404 BC003152 AF132942 TSC_hg19_v1_chr1_-_153935228	-4964	-	TSC_hg19_v1_chr1_-_153931120 AY360172 NM_181715	-9056	-	BC014303 NM_014437	14	-	AK297703 TSC_hg19_v1_chr1_+_153940377 AY049977 AK309767 AK304665 AB052778 NM_130898 BC038962	201	+	AF151056 AF131797 TSC_hg19_v1_chr1_-_153950108 BC001667 BC019277 BC000996	9889	-	BC047288|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC069261|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC007886|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC002563|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AJ243649|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AJ271671|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK293389|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK297983|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK300244|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK075257|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##CR457217|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##DQ893619|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##DQ895350|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##BC003152|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AF132942|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AY360172|CRTC2|200186|CREB regulated transcription coactivator 2##NM_181715|CRTC2|200186|CREB regulated transcription coactivator 2##BC014303|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##NM_014437|SLC39A1|27173|solute carrier family 39 (zinc transporter), member 1##AK297703|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AY049977|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AK304665|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AB052778|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##NM_130898|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##BC038962|CREB3L4|148327|cAMP responsive element binding protein 3-like 4##AF151056|JTB|10899|jumping translocation breakpoint##AF131797|JTB|10899|jumping translocation breakpoint##BC001667|JTB|10899|jumping translocation breakpoint##BC019277|JTB|10899|jumping translocation breakpoint##BC000996|JTB|10899|jumping translocation breakpoint	0.982863	0.0	denovo_WM_7:-21:0.588	denovo_WM_7:-26:0.222
chr12	121735555	121735722	reg1000839.p1	12.987	+	TSC_hg19_v1_chr12_-_121735623 AK292072	-43	-	TSC_hg19_v1_chr12_-_121734549 NM_172226	-1013	-	TSC_hg19_v1_chr12_-_121734513 BC026060 AF140507 AF425668 AK300865	-1131	-	AF287630 AF287631 NM_006549 NM_153499 NM_153500 NM_172214 NM_172215 NM_172216	472	-	BC034243 TSC_hg19_v1_chr12_-_121785683	50029	-	TSC_hg19_v1_chr12_-_121790158 AF191339 CU674542 CU675341	54514	-	AK292072|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172226|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##BC026060|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF140507|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF425668|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AK300865|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF287630|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF287631|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_006549|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153499|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153500|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172214|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172215|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172216|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##BC034243|ANAPC5|51433|anaphase promoting complex subunit 5##AF191339|ANAPC5|51433|anaphase promoting complex subunit 5	0.991978	0.0	
chrX	56791031	56791208	reg1000176.p2	12.984	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-35428	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-201068	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-532209	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	230852	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	356809	-	BC071694 NM_019003	372938	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.99306	0.953849	CTCF.p2:-81:0.954
chr7	108109560	108109712	reg1000713.p1	12.972	+	TSC_hg19_v1_chr7_-_108096830 BC114570 BC115736 AB002341 BX538010 AK299870 BC098401 NM_001193582 NM_001193583 NM_001193584 NM_005010	-12707	-	AJ001057 AB385311 NM_001037132	-229084	-	BC142619 BC140804 BC144591 AF028816 AK300385 NM_007356	-338844	-	TSC_hg19_v1_chr7_-_108142934 BC005203 AK002115	33336	-	AL834147 TSC_hg19_v1_chr7_-_108166546	56897	-	TSC_hg19_v1_chr7_-_108166573 AF263613 AF263947	56930	-	BC114570|NRCAM|4897|neuronal cell adhesion molecule##BC115736|NRCAM|4897|neuronal cell adhesion molecule##AB002341|NRCAM|4897|neuronal cell adhesion molecule##BX538010|NRCAM|4897|neuronal cell adhesion molecule##AK299870|NRCAM|4897|neuronal cell adhesion molecule##BC098401|NRCAM|4897|neuronal cell adhesion molecule##NM_001193582|NRCAM|4897|neuronal cell adhesion molecule##NM_001193583|NRCAM|4897|neuronal cell adhesion molecule##NM_001193584|NRCAM|4897|neuronal cell adhesion molecule##NM_005010|NRCAM|4897|neuronal cell adhesion molecule##AJ001057|NRCAM|4897|neuronal cell adhesion molecule##NM_001037132|NRCAM|4897|neuronal cell adhesion molecule##BC142619|LAMB4|22798|laminin, beta 4##BC140804|LAMB4|22798|laminin, beta 4##BC144591|LAMB4|22798|laminin, beta 4##AF028816|LAMB4|22798|laminin, beta 4##AK300385|LAMB4|22798|laminin, beta 4##NM_007356|LAMB4|22798|laminin, beta 4##BC005203|PNPLA8|50640|patatin-like phospholipase domain containing 8##AK002115|PNPLA8|50640|patatin-like phospholipase domain containing 8##AL834147|PNPLA8|50640|patatin-like phospholipase domain containing 8##AF263613|PNPLA8|50640|patatin-like phospholipase domain containing 8##AF263947|PNPLA8|50640|patatin-like phospholipase domain containing 8	0.999559	0.019634	
chr13	34361220	34361354	reg1000585.p1	12.969	+	TSC_hg19_v1_chr13_-_34250932 BX647695 NM_001243476	-110352	-	AK094704 TSC_hg19_v1_chr13_-_33924768 AK308453	-436519	-	AY366448 AY082589 AY082592 AK312888 AK308430 NM_178006	-501420	-	NM_002915 NM_181558 TSC_hg19_v1_chr13_+_34392248	30940	+	TSC_hg19_v1_chr13_+_34392276 AK296527 BC000149 AK222572 AK312544 L07541 AB528646 DQ890955 DQ894118 BT019668	30997	+	TSC_hg19_v1_chr13_+_35516429 NM_015678 AF467288	1155171	+	BX647695|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243476|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK094704|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK308453|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY366448|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082589|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082592|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK312888|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK308430|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178006|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_002915|RFC3|5983|replication factor C (activator 1) 3, 38kDa##NM_181558|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK296527|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BC000149|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK222572|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK312544|RFC3|5983|replication factor C (activator 1) 3, 38kDa##L07541|RFC3|5983|replication factor C (activator 1) 3, 38kDa##DQ890955|RFC3|5983|replication factor C (activator 1) 3, 38kDa##DQ894118|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BT019668|RFC3|5983|replication factor C (activator 1) 3, 38kDa##NM_015678|NBEA|26960|neurobeachin##AF467288|NBEA|26960|neurobeachin	1.974471	0.0	denovo_WM_7:-53:0.716	denovo_WM_7:-68:0.802
chrX	1640705	1640828	reg1000448.p1	12.968	+	AK301844 NM_001173473	-68115	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-68965	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-129797	-	BC043610 GQ280263 NM_178129 AK126147	15272	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	69763	+	NM_004043 U11090	73581	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.106489	0.0	
chr2	76673141	76673298	reg1000859.p1	12.966	+	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-735168	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-735500	-	TSC_hg19_v1_chr2_+_75873908 NM_014763 AK295578 AK291250 BC030144 CU688824 AB463123 BC021051 D14660 DQ892303 DQ895502	-799281	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	1076199	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	2579619	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	2641914	-	BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_014763|MRPL19|9801|mitochondrial ribosomal protein L19##AK295578|MRPL19|9801|mitochondrial ribosomal protein L19##AK291250|MRPL19|9801|mitochondrial ribosomal protein L19##BC030144|MRPL19|9801|mitochondrial ribosomal protein L19##BC021051|MRPL19|9801|mitochondrial ribosomal protein L19##D14660|MRPL19|9801|mitochondrial ribosomal protein L19##DQ892303|MRPL19|9801|mitochondrial ribosomal protein L19##DQ895502|MRPL19|9801|mitochondrial ribosomal protein L19##BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta	1.126451	0.0	denovo_WM_7:-1:0.857	denovo_WM_7:107:0.447
chr5	17276692	17276844	reg1000870.p1	12.940	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-58928	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-59156	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-340383	-	AK295087 BC031051 NM_001167667 NM_004934	2711554	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4182841	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4182880	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	2.459115	0.0	denovo_WM_7:76:0.237	denovo_WM_7:91:0.306
chr1	211649661	211649787	reg1000912.p1	12.938	+	TSC_hg19_v1_chr1_+_211556168 BC005997	-93556	+	TSC_hg19_v1_chr1_+_211556144 AK130858	-93577	+	BC029600 NM_145759	-130019	+	AY191519 NM_001164688 NM_183059	16534	-	AF364518 TSC_hg19_v1_chr1_-_211751805	102038	-	AB451467 TSC_hg19_v1_chr1_-_211752048	102276	-	BC005997|LINC00467|84791|long intergenic non-protein coding RNA 467##AK130858|LINC00467|84791|long intergenic non-protein coding RNA 467##BC029600|TRAF5|7188|TNF receptor-associated factor 5##NM_145759|TRAF5|7188|TNF receptor-associated factor 5##AY191519|RD3|343035|retinal degeneration 3##NM_001164688|RD3|343035|retinal degeneration 3##NM_183059|RD3|343035|retinal degeneration 3##AF364518|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AB451467|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1	0.037217	0.745569	CTCF.p2:18:0.746
chr12	69181246	69181426	reg1000701.p1	12.929	+	TSC_hg19_v1_chr12_+_69139964 AF148713 BC030504 BC021103 BC049192 BC008412 CU688882	-41279	+	TSC_hg19_v1_chr12_+_69139955 AK289645 AY358943 NM_018656	-41400	+	TSC_hg19_v1_chr12_+_69080760 AJ295745 NM_020401 AK055629 AK315157 AK094183 BC017167 BC043343	-100573	+	TSC_hg19_v1_chr12_+_69201958 BC009893 BC013887 BC067077 M92424 NM_002392 Z12020	20575	+	TSC_hg19_v1_chr12_+_69201980 AK290341	20656	+	EU076746 EU076747 EU076748 EU076749 TSC_hg19_v1_chr12_+_69202803	21465	+	AF148713|SLC35E3|55508|solute carrier family 35, member E3##BC030504|SLC35E3|55508|solute carrier family 35, member E3##BC021103|SLC35E3|55508|solute carrier family 35, member E3##BC049192|SLC35E3|55508|solute carrier family 35, member E3##BC008412|SLC35E3|55508|solute carrier family 35, member E3##AK289645|SLC35E3|55508|solute carrier family 35, member E3##AY358943|SLC35E3|55508|solute carrier family 35, member E3##NM_018656|SLC35E3|55508|solute carrier family 35, member E3##AJ295745|NUP107|57122|nucleoporin 107kDa##NM_020401|NUP107|57122|nucleoporin 107kDa##AK055629|NUP107|57122|nucleoporin 107kDa##AK315157|NUP107|57122|nucleoporin 107kDa##AK094183|NUP107|57122|nucleoporin 107kDa##BC017167|NUP107|57122|nucleoporin 107kDa##BC043343|NUP107|57122|nucleoporin 107kDa##M92424|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##NM_002392|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##Z12020|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AK290341|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076746|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076747|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076748|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076749|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)	2.443061	0.0	denovo_WM_7:-9:0.694	denovo_WM_7:12:0.771	denovo_WM_7:29:0.484
chr6	139214279	139214431	reg1000676.p2	12.929	+	NM_001077706 NM_001195037	-97108	+	AK092592 AX747618 NM_001242740	-119554	-	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	-119565	+	BC021211 TSC_hg19_v1_chr6_-_139309122 AB209143	94722	-	TSC_hg19_v1_chr6_-_139309357 BC035286 AK312938	94993	-	TSC_hg19_v1_chr6_-_139309391 BC012764 NM_001128617 NM_031922	95055	-	NM_001077706|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##NM_001195037|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##AK092592|LOC100507462|100507462|uncharacterized LOC100507462##NM_001242740|LOC100507462|100507462|uncharacterized LOC100507462##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A##BC021211|REPS1|85021|RALBP1 associated Eps domain containing 1##AB209143|REPS1|85021|RALBP1 associated Eps domain containing 1##BC035286|REPS1|85021|RALBP1 associated Eps domain containing 1##AK312938|REPS1|85021|RALBP1 associated Eps domain containing 1##BC012764|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_001128617|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_031922|REPS1|85021|RALBP1 associated Eps domain containing 1	1.978784	0.0	denovo_WM_7:-20:0.616	denovo_WM_7:-41:0.522
chr1	27488270	27488425	reg1000766.p2	12.928	+	M96066 S68616 NM_003047 TSC_hg19_v1_chr1_-_27481521	-6886	-	TSC_hg19_v1_chr1_-_27339448 AK122816	-148893	-	BC012790 BC014160 NM_052943 TSC_hg19_v1_chr1_-_27339338	-149013	-	NM_015023 TSC_hg19_v1_chr1_+_27561056	72687	+	TSC_hg19_v1_chr1_+_27561124 AK315564	72780	+	TSC_hg19_v1_chr1_+_27561153 BC032523	72815	+	M96066|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##S68616|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##NM_003047|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##AK122816|FAM46B|115572|family with sequence similarity 46, member B##BC012790|FAM46B|115572|family with sequence similarity 46, member B##BC014160|FAM46B|115572|family with sequence similarity 46, member B##NM_052943|FAM46B|115572|family with sequence similarity 46, member B##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1	0.990706	0.0	denovo_WM_7:24:0.944
chr3	107379322	107379459	reg1000928.p1	12.926	+	NM_001142568 NM_020235 AF283775 AF454941 TSC_hg19_v1_chr3_+_107241834 AF161457 AK314434 AK057010 AK291757 AF276949 BC131718	-137541	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	-283080	+	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	-419798	+	AB590342 BT006907 DQ890756 DQ891811 DQ893920 TSC_hg19_v1_chr3_-_107809906 BC010016 BC012884 X69398 BC037306 AK289813 Z25521 NM_001777 NM_198793	430483	-	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	561902	-	AK315109 AK296644 TSC_hg19_v1_chr3_+_108015400 AK000692	636011	+	NM_001142568|BBX|56987|bobby sox homolog (Drosophila)##NM_020235|BBX|56987|bobby sox homolog (Drosophila)##AF283775|BBX|56987|bobby sox homolog (Drosophila)##AF454941|BBX|56987|bobby sox homolog (Drosophila)##AF161457|BBX|56987|bobby sox homolog (Drosophila)##AK314434|BBX|56987|bobby sox homolog (Drosophila)##AK057010|BBX|56987|bobby sox homolog (Drosophila)##AK291757|BBX|56987|bobby sox homolog (Drosophila)##AF276949|BBX|56987|bobby sox homolog (Drosophila)##BC131718|BBX|56987|bobby sox homolog (Drosophila)##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##BT006907|CD47|961|CD47 molecule##DQ890756|CD47|961|CD47 molecule##DQ891811|CD47|961|CD47 molecule##DQ893920|CD47|961|CD47 molecule##BC010016|CD47|961|CD47 molecule##BC012884|CD47|961|CD47 molecule##X69398|CD47|961|CD47 molecule##BC037306|CD47|961|CD47 molecule##AK289813|CD47|961|CD47 molecule##Z25521|CD47|961|CD47 molecule##NM_001777|CD47|961|CD47 molecule##NM_198793|CD47|961|CD47 molecule##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK315109|HHLA2|11148|HERV-H LTR-associating 2##AK296644|HHLA2|11148|HERV-H LTR-associating 2##AK000692|HHLA2|11148|HERV-H LTR-associating 2	0.999898	0.700664	CTCF.p2:16:0.701
chr1	25291714	25291877	reg1000661.p1	12.925	+	BC013362 AK310945 NM_001031680 AF022726	-253	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	-35009	-	TSC_hg19_v1_chr1_-_25256761 AK301044	-35056	-	CU679829 DQ890663 EU176475 TSC_hg19_v1_chr1_-_25558994 AF273089 AL080166 BC010862 AK303582 AK314859 BC015824 NM_015484 NM_207170	267192	-	BC065040 TSC_hg19_v1_chr1_-_25573922	282128	-	BC001892 AF267856 AF247168 AK027318 AK292532 AK296798 TSC_hg19_v1_chr1_-_25573946 AK226012 NM_020317	282178	-	BC013362|RUNX3|864|runt-related transcription factor 3##AK310945|RUNX3|864|runt-related transcription factor 3##NM_001031680|RUNX3|864|runt-related transcription factor 3##AF022726|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##DQ890663|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##EU176475|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AF273089|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AL080166|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC010862|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK303582|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK314859|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC015824|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_015484|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_207170|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC065040|C1orf63|57035|chromosome 1 open reading frame 63##BC001892|C1orf63|57035|chromosome 1 open reading frame 63##AF267856|C1orf63|57035|chromosome 1 open reading frame 63##AF247168|C1orf63|57035|chromosome 1 open reading frame 63##AK027318|C1orf63|57035|chromosome 1 open reading frame 63##AK292532|C1orf63|57035|chromosome 1 open reading frame 63##AK296798|C1orf63|57035|chromosome 1 open reading frame 63##AK226012|C1orf63|57035|chromosome 1 open reading frame 63##NM_020317|C1orf63|57035|chromosome 1 open reading frame 63	0.984739	0.0	denovo_WM_7:0:0.439
chr12	104351009	104351189	reg1000818.p1	12.922	+	TSC_hg19_v1_chr12_-_104350994 BC039467 BC073939 AK024037 BC063467 NM_001135570	-154	-	TSC_hg19_v1_chr12_+_104324215 AB209534 BC009195	-26878	+	TSC_hg19_v1_chr12_+_104324199 BC066656	-26900	+	BC044618 TSC_hg19_v1_chr12_-_104359508	8392	-	TSC_hg19_v1_chr12_+_104359670 NM_003211 AK311673 AK303631 AK309792 BC010945 BC019925 BC037557 AK313234 BC071714 AK299832 BC104477 AB590808	8587	+	AY358763 AK027310 TSC_hg19_v1_chr12_-_104443809	92655	-	BC039467|C12orf73|728568|chromosome 12 open reading frame 73##BC073939|C12orf73|728568|chromosome 12 open reading frame 73##AK024037|C12orf73|728568|chromosome 12 open reading frame 73##BC063467|C12orf73|728568|chromosome 12 open reading frame 73##NM_001135570|C12orf73|728568|chromosome 12 open reading frame 73##AB209534|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC009195|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC066656|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC044618|C12orf73|728568|chromosome 12 open reading frame 73##NM_003211|TDG|6996|thymine-DNA glycosylase##AK311673|TDG|6996|thymine-DNA glycosylase##AK303631|TDG|6996|thymine-DNA glycosylase##AK309792|TDG|6996|thymine-DNA glycosylase##BC010945|TDG|6996|thymine-DNA glycosylase##BC019925|TDG|6996|thymine-DNA glycosylase##BC037557|TDG|6996|thymine-DNA glycosylase##AK313234|TDG|6996|thymine-DNA glycosylase##BC071714|TDG|6996|thymine-DNA glycosylase##AK299832|TDG|6996|thymine-DNA glycosylase##BC104477|TDG|6996|thymine-DNA glycosylase##AY358763|GLT8D2|83468|glycosyltransferase 8 domain containing 2##AK027310|GLT8D2|83468|glycosyltransferase 8 domain containing 2	0.999504	0.0	denovo_WM_7:-3:0.964
chr2	145229033	145229165	reg1000965.p1	12.920	+	BX647773 TSC_hg19_v1_chr2_-_145090075 BX647436 NM_001164629	-139035	-	BC017741 AK291357 TSC_hg19_v1_chr2_-_145090037 BC061699	-139067	-	AY281366 NM_001006636	-177040	-	AB193095 AB193096 AB463360 TSC_hg19_v1_chr2_-_145274968	45843	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	46104	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	48532	-	BX647773|GTDC1|79712|glycosyltransferase-like domain containing 1##BX647436|GTDC1|79712|glycosyltransferase-like domain containing 1##NM_001164629|GTDC1|79712|glycosyltransferase-like domain containing 1##BC017741|GTDC1|79712|glycosyltransferase-like domain containing 1##AK291357|GTDC1|79712|glycosyltransferase-like domain containing 1##BC061699|GTDC1|79712|glycosyltransferase-like domain containing 1##AY281366|GTDC1|79712|glycosyltransferase-like domain containing 1##NM_001006636|GTDC1|79712|glycosyltransferase-like domain containing 1##AB193095|ZEB2|9839|zinc finger E-box binding homeobox 2##AB193096|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2	0.987309	0.0	denovo_WM_7:-4:0.698
chr12	113796119	113796266	reg1000829.p1	12.919	+	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	-23267	-	BC098174 BC098360 TSC_hg19_v1_chr12_-_113772887	-23331	-	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	-136889	+	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	179	+	TSC_hg19_v1_chr12_+_113796394 BC030618	194	+	J05037 TSC_hg19_v1_chr12_-_113841693 AK292760 BC020750 NM_006843	45482	-	NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##BC098360|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2##BC030618|PLBD2|196463|phospholipase B domain containing 2##J05037|SDS|10993|serine dehydratase##AK292760|SDS|10993|serine dehydratase##BC020750|SDS|10993|serine dehydratase##NM_006843|SDS|10993|serine dehydratase	0.997808	0.0	
chr3	150316479	150316625	reg1000533.p2	12.919	+	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-51966	+	AF212241 AK298586 TSC_hg19_v1_chr3_+_150264573 AK027356 AK293993 NM_032025	-52008	+	TSC_hg19_v1_chr3_-_150264284 AK093929 AF136975 AK098135 AK090933 NM_014445	-52199	-	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	4424	-	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	4603	+	AK093375 AX748085 BC036239 BC029577 NM_152394	105177	-	BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF212241|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK298586|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK027356|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK293993|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##NM_032025|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093929|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AF136975|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK098135|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK090933|SERP1|27230|stress-associated endoplasmic reticulum protein 1##NM_014445|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A	0.995322	0.0	denovo_WM_7:25:0.433	denovo_WM_7:33:0.325
chr8	125653219	125653370	reg1000935.p1	12.903	+	AF116674 TSC_hg19_v1_chr8_-_125580771	-72533	-	TSC_hg19_v1_chr8_-_125579395 AK126989	-73888	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	-101910	+	TSC_hg19_v1_chr8_-_125716430 U50573	63138	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	87151	-	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	87429	-	AF116674|MTSS1|9788|metastasis suppressor 1##AK126989|MTSS1|9788|metastasis suppressor 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##U50573|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1	0.994745	0.0	denovo_WM_7:14:0.386	denovo_WM_7:15:0.598
chr1	153704844	153705013	reg1000835.p1	12.900	+	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	-4375	+	TSC_hg19_v1_chr1_+_153651222 BC063304 AK025024 NM_000906 X15357	-53632	+	TSC_hg19_v1_chr1_-_153643490 NM_004515	-61438	-	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	42938	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	190523	-	TSC_hg19_v1_chr1_-_153919148 AB007945 NM_014856	214218	-	BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##BC063304|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK025024|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_000906|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##X15357|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_004515|ILF2|3608|interleukin enhancer binding factor 2, 45kDa##BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B##AB007945|DENND4B|9909|DENN/MADD domain containing 4B##NM_014856|DENND4B|9909|DENN/MADD domain containing 4B	0.999822	0.0	denovo_WM_7:2:0.457	denovo_WM_7:3:0.457
chr20	5585536	5585702	reg1000777.p1	12.897	+	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-290583	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-477924	+	TSC_hg19_v1_chr20_+_5107615 NM_003818 AK315489 Y16521 AK304763	-478097	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	5968	-	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	145447	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	306507	+	AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##NM_003818|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK315489|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##Y16521|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK304763|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)	0.773013	0.0	denovo_WM_7:25:0.390
chr14	42861250	42861316	reg1000532.p1	12.896	+	NM_152447 AK096627	-784516	+	BC053537 BC068566 BC030611 NM_203301	-2959622	-	TSC_hg19_v1_chr14_-_39901371 BX248772	-2959926	-	AK302615 CR933626 BC039878 CR933608 AK124110 NM_032135	2115192	-	TSC_hg19_v1_chr14_+_45366532 NM_001017923 BC105030 BC105032 AF250395	2505215	+	BC121009 BC121010 TSC_hg19_v1_chr14_-_45431102	2569813	-	NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##BX248772|FBXO33|254170|F-box protein 33##AK302615|FSCB|84075|fibrous sheath CABYR binding protein##CR933626|FSCB|84075|fibrous sheath CABYR binding protein##BC039878|FSCB|84075|fibrous sheath CABYR binding protein##CR933608|FSCB|84075|fibrous sheath CABYR binding protein##AK124110|FSCB|84075|fibrous sheath CABYR binding protein##NM_032135|FSCB|84075|fibrous sheath CABYR binding protein##NM_001017923|C14orf28|122525|chromosome 14 open reading frame 28##BC105030|C14orf28|122525|chromosome 14 open reading frame 28##BC105032|C14orf28|122525|chromosome 14 open reading frame 28##AF250395|C14orf28|122525|chromosome 14 open reading frame 28##BC121009|KLHL28|54813|kelch-like 28 (Drosophila)##BC121010|KLHL28|54813|kelch-like 28 (Drosophila)	0.551826	0.0	denovo_WM_7:-72:0.552
chr7	98470081	98470193	reg1000848.p1	12.892	+	TSC_hg19_v1_chr7_-_98467663 NM_001134450 NM_001134451 NM_152913 AY358583	-2461	-	AK225783 AK295543 BC030793 TSC_hg19_v1_chr7_-_98467638	-2510	-	AM392947 AM393244 AM393838 AM393874 AB528254 AL834349 AL834348 AK312364 TSC_hg19_v1_chr7_-_98467565 BC037895	-2607	-	TSC_hg19_v1_chr7_+_98476154 AF076974 NM_001244580 NM_003496 AF110377	6013	+	AF199364 AB385491 AF464850 TSC_hg19_v1_chr7_-_98741471	271286	-	TSC_hg19_v1_chr7_-_98741637 BC136804 BC144414	271493	-	NM_001134450|TMEM130|222865|transmembrane protein 130##NM_001134451|TMEM130|222865|transmembrane protein 130##NM_152913|TMEM130|222865|transmembrane protein 130##AY358583|TMEM130|222865|transmembrane protein 130##AK225783|TMEM130|222865|transmembrane protein 130##AK295543|TMEM130|222865|transmembrane protein 130##BC030793|TMEM130|222865|transmembrane protein 130##AM392947|TMEM130|222865|transmembrane protein 130##AM393244|TMEM130|222865|transmembrane protein 130##AM393838|TMEM130|222865|transmembrane protein 130##AM393874|TMEM130|222865|transmembrane protein 130##AL834349|TMEM130|222865|transmembrane protein 130##AL834348|TMEM130|222865|transmembrane protein 130##AK312364|TMEM130|222865|transmembrane protein 130##BC037895|TMEM130|222865|transmembrane protein 130##AF076974|TRRAP|8295|transformation/transcription domain-associated protein##NM_001244580|TRRAP|8295|transformation/transcription domain-associated protein##NM_003496|TRRAP|8295|transformation/transcription domain-associated protein##AF110377|TRRAP|8295|transformation/transcription domain-associated protein##AF199364|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##AF464850|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC136804|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC144414|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1	0.999132	0.74374	CTCF.p2:0:0.744	denovo_WM_7:-29:0.239	denovo_WM_7:-30:0.239	denovo_WM_7:-31:0.239	denovo_WM_7:-32:0.239
chr6	159112518	159112638	reg1000733.p2	12.891	+	TSC_hg19_v1_chr6_+_159071070 NM_001009991 NM_001242384 NM_001242394 NM_001242395 AK092729 AK298712 AX747692 BC085612	-41524	+	AB590427 CR456931 DQ892606 DQ892607 DQ895846 DQ895847 EU862237 U56255 TSC_hg19_v1_chr6_-_159065772 D50663 BC105588 BC029412 AK315601 NM_006519	-46804	-	BC033450 TSC_hg19_v1_chr6_+_158957752	-154876	+	J05021 X51521 TSC_hg19_v1_chr6_-_159239246	126644	-	TSC_hg19_v1_chr6_-_159239264 BC013903 AK299456 BC068458	126681	-	TSC_hg19_v1_chr6_-_159239276 NM_003379	126727	-	NM_001009991|SYTL3|94120|synaptotagmin-like 3##NM_001242384|SYTL3|94120|synaptotagmin-like 3##NM_001242394|SYTL3|94120|synaptotagmin-like 3##NM_001242395|SYTL3|94120|synaptotagmin-like 3##AK092729|SYTL3|94120|synaptotagmin-like 3##AK298712|SYTL3|94120|synaptotagmin-like 3##BC085612|SYTL3|94120|synaptotagmin-like 3##CR456931|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ892606|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ892607|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ895846|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ895847|DYNLT1|6993|dynein, light chain, Tctex-type 1##EU862237|DYNLT1|6993|dynein, light chain, Tctex-type 1##U56255|DYNLT1|6993|dynein, light chain, Tctex-type 1##D50663|DYNLT1|6993|dynein, light chain, Tctex-type 1##BC105588|DYNLT1|6993|dynein, light chain, Tctex-type 1##BC029412|DYNLT1|6993|dynein, light chain, Tctex-type 1##AK315601|DYNLT1|6993|dynein, light chain, Tctex-type 1##NM_006519|DYNLT1|6993|dynein, light chain, Tctex-type 1##BC033450|TMEM181|57583|transmembrane protein 181##J05021|EZR|7430|ezrin##X51521|EZR|7430|ezrin##BC013903|EZR|7430|ezrin##AK299456|EZR|7430|ezrin##BC068458|EZR|7430|ezrin##NM_003379|EZR|7430|ezrin	0.991064	0.776575	CTCF.p2:-13:0.777	denovo_WM_7:28:0.677	denovo_WM_7:29:0.233
chr6	47599156	47599281	reg1000880.p1	12.890	+	TSC_hg19_v1_chr6_+_47445937 AF146277 BC069444	-153302	+	TSC_hg19_v1_chr6_+_47445524 NM_012120	-153703	+	TSC_hg19_v1_chr6_-_47277647 NM_014452	-321523	-	AY140953 DQ315369 NM_153839	25055	+	AK095395 NM_153838 DQ315370	67076	+	BC126194 BC126198 NM_181744 AY377391 AY288419 HQ258199	150570	+	AF146277|CD2AP|23607|CD2-associated protein##BC069444|CD2AP|23607|CD2-associated protein##NM_012120|CD2AP|23607|CD2-associated protein##NM_014452|TNFRSF21|27242|tumor necrosis factor receptor superfamily, member 21##AY140953|GPR111|222611|G protein-coupled receptor 111##DQ315369|GPR111|222611|G protein-coupled receptor 111##NM_153839|GPR111|222611|G protein-coupled receptor 111##AK095395|GPR115|221393|G protein-coupled receptor 115##NM_153838|GPR115|221393|G protein-coupled receptor 115##DQ315370|GPR115|221393|G protein-coupled receptor 115##BC126194|OPN5|221391|opsin 5##BC126198|OPN5|221391|opsin 5##NM_181744|OPN5|221391|opsin 5##AY377391|OPN5|221391|opsin 5##AY288419|OPN5|221391|opsin 5##HQ258199|OPN5|221391|opsin 5	1.082826	0.998323	CTCF.p2:2:0.998	denovo_WM_7:-32:0.357	denovo_WM_7:-33:0.419
chr22	36877650	36877807	reg1000594.p2	12.889	+	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	-49	-	TSC_hg19_v1_chr22_-_36784062 NM_002473	-93670	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-93720	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	25330	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	25389	-	BC093686 BC101477 BC093100 TSC_hg19_v1_chr22_-_36925162	47423	-	BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC093686|EIF3D|8664|eukaryotic translation initiation factor 3, subunit D##BC101477|EIF3D|8664|eukaryotic translation initiation factor 3, subunit D##BC093100|EIF3D|8664|eukaryotic translation initiation factor 3, subunit D	0.997817	0.0	
chr9	75815761	75815904	reg1000853.p1	12.888	+	TSC_hg19_v1_chr9_+_75766797 BC001275	-49029	+	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	-49054	+	NM_000689	-247600	-	NM_006914 BC051830 Y08639	1296442	+	AY333284 NM_001177311	1686430	-	AY333283 NM_001177310 AF448232 AY333282 AY333285 AY333286 AY333287 AY333288	1686902	-	BC001275|ANXA1|301|annexin A1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1##NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##NM_006914|RORB|6096|RAR-related orphan receptor B##BC051830|RORB|6096|RAR-related orphan receptor B##Y08639|RORB|6096|RAR-related orphan receptor B##AY333284|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177311|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333283|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177310|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AF448232|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333282|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333285|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333286|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333287|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333288|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6	1.011982	0.805063	CTCF.p2:-36:0.805
chr14	66607099	66607224	reg1000763.p1	12.882	+	TSC_hg19_v1_chr14_+_65879739 BC025385	-727436	+	TSC_hg19_v1_chr14_+_65879525 Y17978 Y17979	-727673	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	-727835	-	AB037806 AF272663 NM_001024218 NM_020806	366963	+	TSC_hg19_v1_chr14_+_66974859 AK025169	367692	+	TSC_hg19_v1_chr14_+_66974870 AK315569	367708	+	BC025385|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17978|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17979|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431##AB037806|GPHN|10243|gephyrin##AF272663|GPHN|10243|gephyrin##NM_001024218|GPHN|10243|gephyrin##NM_020806|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin	0.816016	0.0	denovo_WM_7:18:0.792
chr3	121793864	121794016	reg1000896.p1	12.880	+	NM_001206924 NM_001206925 NM_175862 AK294663 AK301237 AK316203 BC040261 L25259 AK291497 AK313103	-19686	+	AY672837 AY672839 BC044240 AY134857 TSC_hg19_v1_chr3_-_121741095 AK129974 NM_001199799 NM_001199800 NM_175924	-52893	-	NM_001145998 NM_021082 AK289820 AK296895 AK302002 AK304189 BC020743 BC044572 BC038445 S78203	-180708	+	NM_006889 NM_176892 U04343	2782	+	NM_000388 U20759	108589	+	NM_001178065 U20760	109240	+	NM_001206924|CD86|942|CD86 molecule##NM_001206925|CD86|942|CD86 molecule##NM_175862|CD86|942|CD86 molecule##AK294663|CD86|942|CD86 molecule##AK301237|CD86|942|CD86 molecule##AK316203|CD86|942|CD86 molecule##BC040261|CD86|942|CD86 molecule##L25259|CD86|942|CD86 molecule##AK291497|CD86|942|CD86 molecule##AK313103|CD86|942|CD86 molecule##AY672837|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY672839|ILDR1|286676|immunoglobulin-like domain containing receptor 1##BC044240|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY134857|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AK129974|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199799|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199800|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_175924|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001145998|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##NM_021082|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK289820|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK296895|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK302002|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK304189|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC020743|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC044572|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC038445|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##S78203|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor	0.975849	0.0	denovo_WM_7:9:0.909
chrX	49969277	49969411	reg1000646.p2	12.873	+	AK292463 BC126250 BC126252 NM_003886 Y15195	-3684	-	NM_139289 BC033007 BC070150 TSC_hg19_v1_chrX_-_49965024	-4331	-	NM_000084 AK308089 TSC_hg19_v1_chrX_+_49832243 AK290940	-137099	+	AJ314764 AJ314765 AJ314766 AJ416458 NM_033031 NM_033670	58195	+	TSC_hg19_v1_chrX_-_50213589 BC137319 BC137320 NM_001013742 AB183864	244318	-	TSC_hg19_v1_chrX_-_50386679 AY044234	417333	-	AK292463|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC126250|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC126252|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_003886|AKAP4|8852|A kinase (PRKA) anchor protein 4##Y15195|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_139289|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC033007|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC070150|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_000084|CLCN5|1184|chloride channel 5##AK308089|CLCN5|1184|chloride channel 5##AK290940|CLCN5|1184|chloride channel 5##AJ314764|CCNB3|85417|cyclin B3##AJ314765|CCNB3|85417|cyclin B3##AJ314766|CCNB3|85417|cyclin B3##AJ416458|CCNB3|85417|cyclin B3##NM_033031|CCNB3|85417|cyclin B3##NM_033670|CCNB3|85417|cyclin B3##BC137319|DGKK|139189|diacylglycerol kinase, kappa##BC137320|DGKK|139189|diacylglycerol kinase, kappa##NM_001013742|DGKK|139189|diacylglycerol kinase, kappa##AB183864|DGKK|139189|diacylglycerol kinase, kappa##AY044234|SHROOM4|57477|shroom family member 4	0.999914	1.16677	CTCF.p2:7:0.714	CTCF.p2:-53:0.453
chr12	49716833	49716998	reg1000794.p1	12.869	+	NM_006262 TSC_hg19_v1_chr12_+_49688929 BC032703 AB528454 CU689492 DQ893358 DQ896677	-27970	+	TSC_hg19_v1_chr12_+_49658867 BC011790 BC004949 BC033064 BC051297 BC019298 BC021088	-58031	+	TSC_hg19_v1_chr12_+_49658864 D28390 AK223024 BC005946 NM_032704	-58052	+	NM_001100620 NM_005480 TSC_hg19_v1_chr12_+_49717037 AK315211 AK296811 AK309716 AK310709 AK299302 BC032583 BC018627 BC011597	121	+	BC110812 AF466366 NM_001008223	14048	-	TSC_hg19_v1_chr12_+_49740718 AK055747	23788	+	NM_006262|PRPH|5630|peripherin##BC032703|PRPH|5630|peripherin##DQ893358|PRPH|5630|peripherin##DQ896677|PRPH|5630|peripherin##BC011790|TUBA1C|84790|tubulin, alpha 1c##BC004949|TUBA1C|84790|tubulin, alpha 1c##BC033064|TUBA1C|84790|tubulin, alpha 1c##BC051297|TUBA1C|84790|tubulin, alpha 1c##BC019298|TUBA1C|84790|tubulin, alpha 1c##BC021088|TUBA1C|84790|tubulin, alpha 1c##D28390|TUBA1C|84790|tubulin, alpha 1c##AK223024|TUBA1C|84790|tubulin, alpha 1c##BC005946|TUBA1C|84790|tubulin, alpha 1c##NM_032704|TUBA1C|84790|tubulin, alpha 1c##NM_001100620|TROAP|10024|trophinin associated protein (tastin)##NM_005480|TROAP|10024|trophinin associated protein (tastin)##AK315211|TROAP|10024|trophinin associated protein (tastin)##AK296811|TROAP|10024|trophinin associated protein (tastin)##AK309716|TROAP|10024|trophinin associated protein (tastin)##AK310709|TROAP|10024|trophinin associated protein (tastin)##AK299302|TROAP|10024|trophinin associated protein (tastin)##BC032583|TROAP|10024|trophinin associated protein (tastin)##BC018627|TROAP|10024|trophinin associated protein (tastin)##BC011597|TROAP|10024|trophinin associated protein (tastin)##BC110812|C1QL4|338761|complement component 1, q subcomponent-like 4##AF466366|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001008223|C1QL4|338761|complement component 1, q subcomponent-like 4##AK055747|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22	0.0	0.0	
chr9	95087777	95087957	reg1000295.p2	12.868	+	AB105104 NM_017948	-11	-	NM_001012267	-127	+	CR627363 TSC_hg19_v1_chr9_-_95087631 BC008491 AK001049 AK307408 BC146810 AK297355	-242	-	TSC_hg19_v1_chr9_+_95087934 AK092603 AX747625	80	+	TSC_hg19_v1_chr9_+_95088234 BX537851 BC071726 AK307435 CU687146	361	+	AF086912 AF100758 NM_014057 NM_033014 AK289628 AK295433	79036	-	AB105104|NOL8|55035|nucleolar protein 8##NM_017948|NOL8|55035|nucleolar protein 8##NM_001012267|CENPP|401541|centromere protein P##CR627363|NOL8|55035|nucleolar protein 8##BC008491|NOL8|55035|nucleolar protein 8##AK001049|NOL8|55035|nucleolar protein 8##AK307408|NOL8|55035|nucleolar protein 8##BC146810|NOL8|55035|nucleolar protein 8##AK297355|NOL8|55035|nucleolar protein 8##AK092603|CENPP|401541|centromere protein P##BX537851|CENPP|401541|centromere protein P##BC071726|CENPP|401541|centromere protein P##AK307435|CENPP|401541|centromere protein P##AF086912|OGN|4969|osteoglycin##AF100758|OGN|4969|osteoglycin##NM_014057|OGN|4969|osteoglycin##NM_033014|OGN|4969|osteoglycin##AK289628|OGN|4969|osteoglycin##AK295433|OGN|4969|osteoglycin	0.054945	0.0	
chr1	169877934	169878066	reg1000702.p2	12.864	+	TSC_hg19_v1_chr1_-_169863059 NM_020423 NM_181093	-14938	-	AL117233 TSC_hg19_v1_chr1_-_169863038 BC014662 AK292507	-14987	-	AL354614 NM_018186	-113451	+	AK122897 NM_001204517	160055	-	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	165743	-	BC157860 BC171858 NM_001136107	237187	+	NM_020423|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##NM_181093|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL117233|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##BC014662|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AK292507|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL354614|C1orf112|55732|chromosome 1 open reading frame 112##NM_018186|C1orf112|55732|chromosome 1 open reading frame 112##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B	1.896763	0.0	denovo_WM_7:-41:0.297
chr17	57696982	57697127	reg1000410.p1	12.860	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	-9	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	-54067	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	-288036	+	TSC_hg19_v1_chr17_+_57697265 BC054489 BX640615	216	+	TSC_hg19_v1_chr17_+_57697282 BC051800	226	+	TSC_hg19_v1_chr17_+_57697289 AK127134 D21260	247	+	NM_004859|CLTC|1213|clathrin, heavy chain (Hc)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##BC054489|CLTC|1213|clathrin, heavy chain (Hc)##BX640615|CLTC|1213|clathrin, heavy chain (Hc)##BC051800|CLTC|1213|clathrin, heavy chain (Hc)##AK127134|CLTC|1213|clathrin, heavy chain (Hc)##D21260|CLTC|1213|clathrin, heavy chain (Hc)	0.852681	0.0	denovo_WM_7:-28:0.274	denovo_WM_7:-30:0.467
chr22	35705594	35705759	reg1000817.p4	12.860	+	TSC_hg19_v1_chr22_+_35695886 AK097066 AK297827 AK295918 AK296670 AK314522 AK097926 CR456595 BC005144 BC040006 BC046151 AB463301 CU013195 CU013483 CU692314	-9780	+	TSC_hg19_v1_chr22_+_35695855 NM_001135730 NM_001135732 NM_005488 AK026576 AJ006973 AY358980	-9845	+	AK293694 NM_001135729	-10409	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	71392	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	71450	+	AF051791 TSC_hg19_v1_chr22_+_35779219	73486	+	AK097066|TOM1|10043|target of myb1 (chicken)##AK297827|TOM1|10043|target of myb1 (chicken)##AK295918|TOM1|10043|target of myb1 (chicken)##AK296670|TOM1|10043|target of myb1 (chicken)##AK314522|TOM1|10043|target of myb1 (chicken)##AK097926|TOM1|10043|target of myb1 (chicken)##CR456595|TOM1|10043|target of myb1 (chicken)##BC040006|TOM1|10043|target of myb1 (chicken)##BC046151|TOM1|10043|target of myb1 (chicken)##CU013195|TOM1|10043|target of myb1 (chicken)##CU013483|TOM1|10043|target of myb1 (chicken)##NM_001135730|TOM1|10043|target of myb1 (chicken)##NM_001135732|TOM1|10043|target of myb1 (chicken)##NM_005488|TOM1|10043|target of myb1 (chicken)##AK026576|TOM1|10043|target of myb1 (chicken)##AJ006973|TOM1|10043|target of myb1 (chicken)##AY358980|TOM1|10043|target of myb1 (chicken)##AK293694|TOM1|10043|target of myb1 (chicken)##NM_001135729|TOM1|10043|target of myb1 (chicken)##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##AF051791|HMOX1|3162|heme oxygenase (decycling) 1	0.998968	0.0	denovo_WM_7:-29:0.310	denovo_WM_7:-30:0.310	denovo_WM_7:-31:0.310
chr14	102276085	102276265	reg1000591.p2	12.859	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-47989	+	BX161470 NM_001362 S79854 TSC_hg19_v1_chr14_+_102027831 AK292310 BC017717	-248412	+	BC150617 NM_001134888	-924992	-	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	8	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	134	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	154653	+	NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BX161470|DIO3|1735|deiodinase, iodothyronine, type III##NM_001362|DIO3|1735|deiodinase, iodothyronine, type III##S79854|DIO3|1735|deiodinase, iodothyronine, type III##BC017717|DIO3|1735|deiodinase, iodothyronine, type III##BC150617|RTL1|388015|retrotransposon-like 1##NM_001134888|RTL1|388015|retrotransposon-like 1##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1	0.972374	0.0	denovo_WM_7:33:0.949
chr6	149067819	149067959	reg1000674.p1	12.857	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-403698	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-403899	+	AK025495 NM_015278 TSC_hg19_v1_chr6_+_148663793	-404126	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	320	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	571214	+	AK315038 NM_015093 AK307650	571552	+	AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AK025495|SASH1|23328|SAM and SH3 domain containing 1##NM_015278|SASH1|23328|SAM and SH3 domain containing 1##NM_005715|UST|10090|uronyl-2-sulfotransferase##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2	0.978695	0.0	denovo_WM_7:31:0.979
chr11	34075056	34075227	reg1000888.p1	12.855	+	TSC_hg19_v1_chr11_+_34073956 EU176359 EU176467 EU176701	-1104	+	TSC_hg19_v1_chr11_+_34073950 Z48042	-1204	+	TSC_hg19_v1_chr11_+_34073889 AK299720	-1237	+	NM_001144030 NM_024662 TSC_hg19_v1_chr11_+_34127175 AK022241 AK225341 BC035558 AB051496	52016	+	TSC_hg19_v1_chr11_+_34127208 AK294044 AL136882 AK001636 BC014440 BC020205	52109	+	TSC_hg19_v1_chr11_-_34379556 AK291744 NM_145804	304414	-	EU176359|CAPRIN1|4076|cell cycle associated protein 1##EU176467|CAPRIN1|4076|cell cycle associated protein 1##EU176701|CAPRIN1|4076|cell cycle associated protein 1##Z48042|CAPRIN1|4076|cell cycle associated protein 1##AK299720|CAPRIN1|4076|cell cycle associated protein 1##NM_001144030|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_024662|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK022241|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK225341|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC035558|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AB051496|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK294044|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AL136882|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK001636|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC014440|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC020205|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK291744|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##NM_145804|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2	0.999676	0.0	denovo_WM_7:8:0.882
chr1	210570796	210570945	reg1000633.p1	12.849	+	NM_001170580 BC051191	-68229	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-68605	+	NM_001122834 NM_001170564 AK297193	-69274	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	736515	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	861838	+	TSC_hg19_v1_chr1_+_211432726 AK131312	861857	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.997471	0.0	denovo_WM_7:37:0.884
chr10	71906482	71906660	reg1000838.p1	12.847	+	TSC_hg19_v1_chr10_-_71906457 BC047424 NM_001040273 NM_173555	-91	-	TSC_hg19_v1_chr10_-_71906446 BC030242 AK074968 BC111501 BC042629	-143	-	TSC_hg19_v1_chr10_-_71905958 BC016840	-565	-	TSC_hg19_v1_chr10_-_71930260 AK298591 AK312469 BC003658 AF274026 AF087897 AF217959 AF261717 AY008268 AL136724 NM_001142648 NM_020150	23708	-	AF108211 AB590125 AF217186 DQ893597 AB026723 TSC_hg19_v1_chr10_-_71993148 BC107882 AF154065 BC105034 BC105036 AF092439 AF119665 BC001022 BC061581 AK058193 NM_021129	86582	-	NM_022146	136878	-	BC047424|TYSND1|219743|trypsin domain containing 1##NM_001040273|TYSND1|219743|trypsin domain containing 1##NM_173555|TYSND1|219743|trypsin domain containing 1##BC030242|TYSND1|219743|trypsin domain containing 1##AK074968|TYSND1|219743|trypsin domain containing 1##BC111501|TYSND1|219743|trypsin domain containing 1##BC042629|TYSND1|219743|trypsin domain containing 1##BC016840|TYSND1|219743|trypsin domain containing 1##AK298591|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AK312469|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC003658|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF274026|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF087897|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF217959|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF261717|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AY008268|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AL136724|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_001142648|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_020150|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF108211|PPA1|5464|pyrophosphatase (inorganic) 1##AF217186|PPA1|5464|pyrophosphatase (inorganic) 1##DQ893597|PPA1|5464|pyrophosphatase (inorganic) 1##AB026723|PPA1|5464|pyrophosphatase (inorganic) 1##BC107882|PPA1|5464|pyrophosphatase (inorganic) 1##AF154065|PPA1|5464|pyrophosphatase (inorganic) 1##BC105034|PPA1|5464|pyrophosphatase (inorganic) 1##BC105036|PPA1|5464|pyrophosphatase (inorganic) 1##AF092439|PPA1|5464|pyrophosphatase (inorganic) 1##AF119665|PPA1|5464|pyrophosphatase (inorganic) 1##BC001022|PPA1|5464|pyrophosphatase (inorganic) 1##BC061581|PPA1|5464|pyrophosphatase (inorganic) 1##AK058193|PPA1|5464|pyrophosphatase (inorganic) 1##NM_021129|PPA1|5464|pyrophosphatase (inorganic) 1##NM_022146|NPFFR1|64106|neuropeptide FF receptor 1	0.791257	0.0	denovo_WM_7:3:0.655
chr16	21529140	21529267	reg1000638.p2	12.847	+	BC036263 NM_130464	-92546	-	BX648477 NM_001014444 NM_001888	-214816	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-239555	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	2549	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	81687	+	AF151839 TSC_hg19_v1_chr16_+_21611174	81951	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	0.999484	0.0	
chr19	39931244	39931357	reg1000669.p2	12.843	+	CU678668 CU687136 DQ893449 DQ896219 TSC_hg19_v1_chr19_-_39926589 BC024970 BC007977 BC071674 M60854 BC095429 BC004324 AK055869 AK315498 D28392 NM_001020	-4724	-	AK024429 NM_022835	-27551	+	TSC_hg19_v1_chr19_+_39899749 AJ227917	-31507	+	NM_001111020 NM_001130824 NM_001130825 TSC_hg19_v1_chr19_+_39936212 AB000516	4898	+	TSC_hg19_v1_chr19_+_39936221 AK295137 AK296117 AK302954 Y12790	4927	+	TSC_hg19_v1_chr19_+_39936247 U56402	4945	+	DQ893449|RPS16|6217|ribosomal protein S16##DQ896219|RPS16|6217|ribosomal protein S16##BC024970|RPS16|6217|ribosomal protein S16##BC007977|RPS16|6217|ribosomal protein S16##BC071674|RPS16|6217|ribosomal protein S16##M60854|RPS16|6217|ribosomal protein S16##BC095429|RPS16|6217|ribosomal protein S16##BC004324|RPS16|6217|ribosomal protein S16##AK055869|RPS16|6217|ribosomal protein S16##AK315498|RPS16|6217|ribosomal protein S16##D28392|RPS16|6217|ribosomal protein S16##NM_001020|RPS16|6217|ribosomal protein S16##AK024429|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_022835|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_001111020|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130824|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130825|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AB000516|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK295137|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK296117|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK302954|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##Y12790|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##U56402|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)	0.993792	0.0	denovo_WM_7:15:0.248	denovo_WM_7:16:0.248	denovo_WM_7:17:0.248	denovo_WM_7:18:0.248
chr12	42678084	42678221	reg1000710.p2	12.838	+	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-45981	-	CU691510 EU446625 EU446756 AB527838 TSC_hg19_v1_chr12_-_42632024 BC037777 AK127531 AK291355 AK296191 AK294260 NM_001190977	-46117	-	TSC_hg19_v1_chr12_-_42538503 AK125141 NM_001099650 NM_173601 BC030023	-139573	-	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	41723	-	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	41826	+	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	199264	-	NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##EU446625|YAF2|10138|YY1 associated factor 2##EU446756|YAF2|10138|YY1 associated factor 2##BC037777|YAF2|10138|YY1 associated factor 2##AK127531|YAF2|10138|YY1 associated factor 2##AK291355|YAF2|10138|YY1 associated factor 2##AK296191|YAF2|10138|YY1 associated factor 2##AK294260|YAF2|10138|YY1 associated factor 2##NM_001190977|YAF2|10138|YY1 associated factor 2##AK125141|GXYLT1|283464|glucoside xylosyltransferase 1##NM_001099650|GXYLT1|283464|glucoside xylosyltransferase 1##NM_173601|GXYLT1|283464|glucoside xylosyltransferase 1##BC030023|GXYLT1|283464|glucoside xylosyltransferase 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)	2.573282	0.0	denovo_WM_7:-14:0.485	denovo_WM_7:-29:0.279	denovo_WM_7:-30:0.381	denovo_WM_7:-46:0.785
chr15	101792203	101792328	reg1000705.p1	12.837	+	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	-130	-	AB071402 TSC_hg19_v1_chr15_-_101791795	-529	-	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-332753	+	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	25398	-	TSC_hg19_v1_chr15_-_101835402 AB528428 CU692724 AJ130971 AJ130972 DQ892838 DQ896084 BC071717	43116	-	TSC_hg19_v1_chr15_-_101835457 AK223110 AK312200 X13482 BC022816 AK290078 AK223070 BC067846 NM_003090	43166	-	BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S##AJ130971|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AJ130972|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ892838|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ896084|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC071717|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223110|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK312200|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##X13482|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC022816|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK290078|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223070|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC067846|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##NM_003090|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'	0.972028	0.0	denovo_WM_7:26:0.498	denovo_WM_7:27:0.474
chr19	12845576	12845716	reg1000780.p1	12.829	+	TSC_hg19_v1_chr19_-_12845557 BC040846	-98	-	TSC_hg19_v1_chr19_-_12845516 BC000216 NM_024038 BC001840	-124	-	TSC_hg19_v1_chr19_-_12845497 BC015347 AK315754 AK027588	-158	-	TSC_hg19_v1_chr19_+_12848310 NM_004317 AK223363 AK291855 AK293588 AF047469 BC002651 CU678092 U60276	2678	+	AF440756 AY515705 NM_017682 AK000139 AK225232	17792	+	CU680326 DQ891339 DQ893360 DQ894521 DQ896679 AB527820 TSC_hg19_v1_chr19_-_12886342 AF044924 BC012443	40681	-	BC040846|C19orf43|79002|chromosome 19 open reading frame 43##BC000216|C19orf43|79002|chromosome 19 open reading frame 43##NM_024038|C19orf43|79002|chromosome 19 open reading frame 43##BC015347|C19orf43|79002|chromosome 19 open reading frame 43##AK315754|C19orf43|79002|chromosome 19 open reading frame 43##AK027588|C19orf43|79002|chromosome 19 open reading frame 43##NM_004317|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK223363|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK291855|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK293588|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF047469|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##BC002651|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##U60276|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF440756|BEST2|54831|bestrophin 2##AY515705|BEST2|54831|bestrophin 2##NM_017682|BEST2|54831|bestrophin 2##AK000139|BEST2|54831|bestrophin 2##AK225232|BEST2|54831|bestrophin 2##DQ891339|HOOK2|29911|hook homolog 2 (Drosophila)##DQ893360|HOOK2|29911|hook homolog 2 (Drosophila)##DQ894521|HOOK2|29911|hook homolog 2 (Drosophila)##DQ896679|HOOK2|29911|hook homolog 2 (Drosophila)##AF044924|HOOK2|29911|hook homolog 2 (Drosophila)##BC012443|HOOK2|29911|hook homolog 2 (Drosophila)	0.988931	0.0	denovo_WM_7:41:0.614
chr6	149886676	149886845	reg1000809.p1	12.828	+	BC020986 TSC_hg19_v1_chr6_-_149867195 AK315388 NM_139126	-19555	-	TSC_hg19_v1_chr6_-_149867172 AF357880 AK092069 AX747342 BX537536 BC107684	-19593	-	TSC_hg19_v1_chr6_-_149867153 CU676802 GQ129364 GQ129365 BC064134	-19616	-	TSC_hg19_v1_chr6_+_149887361 AY358952	615	+	TSC_hg19_v1_chr6_+_149887540 AK295690 BC014320 NM_138785 AK315729 AK289402 AK308844	751	+	TSC_hg19_v1_chr6_+_149887543 AK311061	784	+	BC020986|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AK315388|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##NM_139126|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AF357880|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AK092069|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BX537536|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC107684|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129364|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129365|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC064134|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AY358952|C6orf72|116254|chromosome 6 open reading frame 72##AK295690|C6orf72|116254|chromosome 6 open reading frame 72##BC014320|C6orf72|116254|chromosome 6 open reading frame 72##NM_138785|C6orf72|116254|chromosome 6 open reading frame 72##AK315729|C6orf72|116254|chromosome 6 open reading frame 72##AK289402|C6orf72|116254|chromosome 6 open reading frame 72##AK308844|C6orf72|116254|chromosome 6 open reading frame 72##AK311061|C6orf72|116254|chromosome 6 open reading frame 72	0.996729	0.0	denovo_WM_7:-15:0.470	denovo_WM_7:-16:0.527
chr19	34827844	34827997	reg1000797.p1	12.822	+	TSC_hg19_v1_chr19_+_34745535 NM_014686 AB002353 BX648432	-82410	+	TSC_hg19_v1_chr19_+_34710343 AL117499	-117540	+	TSC_hg19_v1_chr19_+_34663440 AL834398 AK027643 AB069974 AB069975	-164452	+	TSC_hg19_v1_chr19_+_34856083 NM_001184722 AK294396 NM_000175	27920	+	TSC_hg19_v1_chr19_+_34856150 AB209575 AK301103	28218	+	AK293446 TSC_hg19_v1_chr19_+_34856160 BC004982 K03515 X16539 DQ892924 DQ896173	28242	+	NM_014686|KIAA0355|9710|KIAA0355##AB002353|KIAA0355|9710|KIAA0355##AL117499|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AL834398|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK027643|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069974|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069975|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##NM_001184722|GPI|2821|glucose-6-phosphate isomerase##AK294396|GPI|2821|glucose-6-phosphate isomerase##NM_000175|GPI|2821|glucose-6-phosphate isomerase##AB209575|GPI|2821|glucose-6-phosphate isomerase##AK301103|GPI|2821|glucose-6-phosphate isomerase##AK293446|GPI|2821|glucose-6-phosphate isomerase##BC004982|GPI|2821|glucose-6-phosphate isomerase##K03515|GPI|2821|glucose-6-phosphate isomerase##X16539|GPI|2821|glucose-6-phosphate isomerase##DQ892924|GPI|2821|glucose-6-phosphate isomerase##DQ896173|GPI|2821|glucose-6-phosphate isomerase	0.988896	0.856907	CTCF.p2:-4:0.857	denovo_WM_7:43:0.322	denovo_WM_7:44:0.322	denovo_WM_7:45:0.322
chr11	9187526	9187654	reg1000790.p2	12.819	+	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-74452	-	BC008835 TSC_hg19_v1_chr11_-_9025549 AK024750 AK098694 AK296484 NM_020645	-162027	-	BC040124 TSC_hg19_v1_chr11_-_8986002	-201581	-	TSC_hg19_v1_chr11_-_9225783 AK302478	38231	-	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	99272	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	148469	-	BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##BC008835|NRIP3|56675|nuclear receptor interacting protein 3##AK024750|NRIP3|56675|nuclear receptor interacting protein 3##AK098694|NRIP3|56675|nuclear receptor interacting protein 3##AK296484|NRIP3|56675|nuclear receptor interacting protein 3##NM_020645|NRIP3|56675|nuclear receptor interacting protein 3##BC040124|TMEM9B|56674|TMEM9 domain family, member B##AK302478|DENND5A|23258|DENN/MADD domain containing 5A##AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B	1.983096	0.358389	CTCF.p2:3:0.358	denovo_WM_7:31:0.973	denovo_WM_7:47:0.926
chr14	100412410	100412555	reg1000670.p1	12.812	+	TSC_hg19_v1_chr14_+_100259749 AK126980 BX247979 NM_001008707 NM_004434 BC033043 U97018 BC032541 CU689414 DQ891556 DQ894743	-152778	+	AK299812 TSC_hg19_v1_chr14_+_100240040	-172491	+	TSC_hg19_v1_chr14_+_100204058 AK307925	-208432	+	TSC_hg19_v1_chr14_+_100438137 AK289720 BC023997	25672	+	AK295919 TSC_hg19_v1_chr14_+_100485800	73277	+	TSC_hg19_v1_chr14_+_100531758 NM_016337 AK301379	119270	+	AK126980|EML1|2009|echinoderm microtubule associated protein like 1##BX247979|EML1|2009|echinoderm microtubule associated protein like 1##NM_001008707|EML1|2009|echinoderm microtubule associated protein like 1##NM_004434|EML1|2009|echinoderm microtubule associated protein like 1##BC033043|EML1|2009|echinoderm microtubule associated protein like 1##U97018|EML1|2009|echinoderm microtubule associated protein like 1##BC032541|EML1|2009|echinoderm microtubule associated protein like 1##DQ891556|EML1|2009|echinoderm microtubule associated protein like 1##DQ894743|EML1|2009|echinoderm microtubule associated protein like 1##AK299812|EML1|2009|echinoderm microtubule associated protein like 1##AK307925|EML1|2009|echinoderm microtubule associated protein like 1##AK289720|EVL|51466|Enah/Vasp-like##BC023997|EVL|51466|Enah/Vasp-like##AK295919|EVL|51466|Enah/Vasp-like##NM_016337|EVL|51466|Enah/Vasp-like##AK301379|EVL|51466|Enah/Vasp-like	1.365417	0.0	denovo_WM_7:-44:0.288
chr16	3839785	3839934	reg1000697.p1	12.810	+	TSC_hg19_v1_chr16_-_3767521 U12595 BC001455 AF043254 AB528744 CU676340 DQ893476 DQ896346 BC000406 BC002994 AF154108 AK299127 BC018950 AK223049 AK223076 AK223205 BC023585 AK093344 NM_016292	-72324	-	NM_005223	-136920	+	TSC_hg19_v1_chr16_-_3661587 NM_032444 AK122775	-178276	-	TSC_hg19_v1_chr16_-_3843474 AK304771	3667	-	AB210043 NM_001079846 NM_004380	90261	-	TSC_hg19_v1_chr16_-_3930711 U47741	90839	-	U12595|TRAP1|10131|TNF receptor-associated protein 1##BC001455|TRAP1|10131|TNF receptor-associated protein 1##AF043254|TRAP1|10131|TNF receptor-associated protein 1##DQ893476|TRAP1|10131|TNF receptor-associated protein 1##DQ896346|TRAP1|10131|TNF receptor-associated protein 1##BC000406|TRAP1|10131|TNF receptor-associated protein 1##BC002994|TRAP1|10131|TNF receptor-associated protein 1##AF154108|TRAP1|10131|TNF receptor-associated protein 1##AK299127|TRAP1|10131|TNF receptor-associated protein 1##BC018950|TRAP1|10131|TNF receptor-associated protein 1##AK223049|TRAP1|10131|TNF receptor-associated protein 1##AK223076|TRAP1|10131|TNF receptor-associated protein 1##AK223205|TRAP1|10131|TNF receptor-associated protein 1##BC023585|TRAP1|10131|TNF receptor-associated protein 1##AK093344|TRAP1|10131|TNF receptor-associated protein 1##NM_016292|TRAP1|10131|TNF receptor-associated protein 1##NM_005223|DNASE1|1773|deoxyribonuclease I##NM_032444|SLX4|84464|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)##AK122775|SLX4|84464|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)##AK304771|CREBBP|1387|CREB binding protein##AB210043|CREBBP|1387|CREB binding protein##NM_001079846|CREBBP|1387|CREB binding protein##NM_004380|CREBBP|1387|CREB binding protein##U47741|CREBBP|1387|CREB binding protein	1.348833	0.0	denovo_WM_7:33:0.871	denovo_WM_7:54:0.361
chr20	34204451	34204585	reg1000492.p1	12.802	+	TSC_hg19_v1_chr20_+_34203752 AF262992 NM_003116 BC143783 AB464242	-683	+	BC029951 AY461812 TSC_hg19_v1_chr20_-_34195432	-9096	-	TSC_hg19_v1_chr20_+_34129833 CU679479 CU680742 AF091085	-74673	+	NM_003915	37312	-	TSC_hg19_v1_chr20_-_34243133 AB385382 DQ893493 DQ896437	38663	-	TSC_hg19_v1_chr20_-_34252792 AF345332 AF393214 BC001142 AB018308	48275	-	AF262992|SPAG4|6676|sperm associated antigen 4##NM_003116|SPAG4|6676|sperm associated antigen 4##BC143783|SPAG4|6676|sperm associated antigen 4##BC029951|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AY461812|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AF091085|ERGIC3|51614|ERGIC and golgi 3##NM_003915|CPNE1|8904|copine I##DQ893493|RBM12|10137|RNA binding motif protein 12##DQ896437|RBM12|10137|RNA binding motif protein 12##AF345332|RBM12|10137|RNA binding motif protein 12##AF393214|RBM12|10137|RNA binding motif protein 12##BC001142|CPNE1|8904|copine I##AB018308|RBM12|10137|RNA binding motif protein 12	0.998631	0.0	denovo_WM_7:45:0.449	denovo_WM_7:46:0.449
chr6	76206190	76206319	reg1000724.p1	12.801	+	AK290232 BC136443 BC136444 AL832009 AK097021 BC110829 BX647178 NM_015687 TSC_hg19_v1_chr6_-_76203497	-2878	-	TSC_hg19_v1_chr6_+_75994737 EF565086	-211499	+	NM_001143958 NM_018247 TSC_hg19_v1_chr6_-_75994700	-211584	-	AK126921 TSC_hg19_v1_chr6_+_76311581	105151	+	TSC_hg19_v1_chr6_+_76311617 NM_001100409 NM_015571	105365	+	TSC_hg19_v1_chr6_+_76311642 AK096455	105382	+	AK290232|FILIP1|27145|filamin A interacting protein 1##BC136443|FILIP1|27145|filamin A interacting protein 1##BC136444|FILIP1|27145|filamin A interacting protein 1##AL832009|FILIP1|27145|filamin A interacting protein 1##AK097021|FILIP1|27145|filamin A interacting protein 1##BX647178|FILIP1|27145|filamin A interacting protein 1##NM_015687|FILIP1|27145|filamin A interacting protein 1##EF565086|LOC100506804|100506804|uncharacterized LOC100506804##NM_001143958|TMEM30A|55754|transmembrane protein 30A##NM_018247|TMEM30A|55754|transmembrane protein 30A##AK126921|SENP6|26054|SUMO1/sentrin specific peptidase 6##NM_001100409|SENP6|26054|SUMO1/sentrin specific peptidase 6##NM_015571|SENP6|26054|SUMO1/sentrin specific peptidase 6##AK096455|SENP6|26054|SUMO1/sentrin specific peptidase 6	0.990761	0.0	denovo_WM_7:22:0.491	denovo_WM_7:23:0.286	denovo_WM_7:24:0.214
chr17	62097999	62098176	reg1000795.p3	12.800	+	TSC_hg19_v1_chr17_-_62097985 AK295382 AK309953 NM_001099786 NM_001099787 NM_001099788 NM_001099789	-105	-	NM_000873 TSC_hg19_v1_chr17_-_62084314	-13782	-	AK021786 AK294360 AK302960 AK304254 NM_001164257 NM_001191029 NM_001191030 NM_001191031 BC030709 BC045676	-22325	+	TSC_hg19_v1_chr17_-_62207401 AB385116 BC130405 BC130407	109311	-	AF059198 AB209869 TSC_hg19_v1_chr17_-_62207502 NM_001433 AK292403	109429	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	242499	-	AK295382|ICAM2|3384|intercellular adhesion molecule 2##NM_001099786|ICAM2|3384|intercellular adhesion molecule 2##NM_001099787|ICAM2|3384|intercellular adhesion molecule 2##NM_001099788|ICAM2|3384|intercellular adhesion molecule 2##NM_001099789|ICAM2|3384|intercellular adhesion molecule 2##NM_000873|ICAM2|3384|intercellular adhesion molecule 2##AK021786|C17orf72|92340|chromosome 17 open reading frame 72##AK294360|C17orf72|92340|chromosome 17 open reading frame 72##AK302960|C17orf72|92340|chromosome 17 open reading frame 72##AK304254|C17orf72|92340|chromosome 17 open reading frame 72##NM_001164257|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191029|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191030|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191031|C17orf72|92340|chromosome 17 open reading frame 72##BC030709|C17orf72|92340|chromosome 17 open reading frame 72##BC045676|C17orf72|92340|chromosome 17 open reading frame 72##BC130405|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130407|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AF059198|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AB209869|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##NM_001433|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK292403|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2	1.999022	0.0	denovo_WM_7:3:0.974	denovo_WM_7:57:0.457	denovo_WM_7:58:0.457
chr3	52446203	52446321	reg1000773.p2	12.794	+	AY014283 TSC_hg19_v1_chr3_+_52445005	-1280	+	TSC_hg19_v1_chr3_+_52444675 BC022002 AK292221	-1586	+	TSC_hg19_v1_chr3_+_52444661 NM_016483 NM_173341	-1671	+	AB029496 BC098104 BC098137 BC099724 NM_020163 TSC_hg19_v1_chr3_-_52479120	32835	-	CR541865 CR541885 DQ891026 DQ894206 AF020769 TSC_hg19_v1_chr3_-_52488058 BC030244 AK313743 NM_003280 X07897	41792	-	TSC_hg19_v1_chr3_+_52489516 NM_007184	43251	+	AY014283|PHF7|51533|PHD finger protein 7##BC022002|PHF7|51533|PHD finger protein 7##AK292221|PHF7|51533|PHD finger protein 7##NM_016483|PHF7|51533|PHD finger protein 7##NM_173341|PHF7|51533|PHD finger protein 7##AB029496|SEMA3G|56920|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G##BC098104|SEMA3G|56920|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G##BC098137|SEMA3G|56920|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G##BC099724|SEMA3G|56920|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G##NM_020163|SEMA3G|56920|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G##CR541865|TNNC1|7134|troponin C type 1 (slow)##CR541885|TNNC1|7134|troponin C type 1 (slow)##DQ891026|TNNC1|7134|troponin C type 1 (slow)##DQ894206|TNNC1|7134|troponin C type 1 (slow)##AF020769|TNNC1|7134|troponin C type 1 (slow)##BC030244|TNNC1|7134|troponin C type 1 (slow)##AK313743|TNNC1|7134|troponin C type 1 (slow)##NM_003280|TNNC1|7134|troponin C type 1 (slow)##X07897|TNNC1|7134|troponin C type 1 (slow)##NM_007184|NISCH|11188|nischarin	0.999065	0.0	denovo_WM_7:-37:0.774
chr1	12677655	12677795	reg1000365.p1	12.793	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	-142	-	TSC_hg19_v1_chr1_+_12403045 AK057675	-274655	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	-387618	+	NM_001013630	26840	+	AK127828 NM_001103169 NM_001103170	98392	+	BC029894 NM_152290 AK026705 AK298760	128441	+	DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_001013630|AADACL4|343066|arylacetamide deacetylase-like 4##AK127828|AADACL3|126767|arylacetamide deacetylase-like 3##NM_001103169|AADACL3|126767|arylacetamide deacetylase-like 3##NM_001103170|AADACL3|126767|arylacetamide deacetylase-like 3##BC029894|C1orf158|93190|chromosome 1 open reading frame 158##NM_152290|C1orf158|93190|chromosome 1 open reading frame 158##AK026705|C1orf158|93190|chromosome 1 open reading frame 158##AK298760|C1orf158|93190|chromosome 1 open reading frame 158	1.997339	0.0	denovo_WM_7:4:0.648
chrX	71320820	71320973	reg1000801.p1	12.792	+	TSC_hg19_v1_chrX_+_71130694 NM_001013627	-190118	+	NM_001145139 NM_001145140	-337757	+	NM_001145139 NM_001145140	-382762	-	AB082532 BC151224 NM_001024455 TSC_hg19_v1_chrX_-_71351772	30895	-	AK126598 AY572224 NM_207422	43137	+	NM_001170747 NM_006223 BC093700 BC112281 HQ258728 TSC_hg19_v1_chrX_+_71401606 AB009690 BC005234 BC070288 BC111394 BC104653 AK127605 AF143096	80679	+	NM_001013627|NHSL2|340527|NHS-like 2##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##AB082532|RGAG4|340526|retrotransposon gag domain containing 4##BC151224|RGAG4|340526|retrotransposon gag domain containing 4##NM_001024455|RGAG4|340526|retrotransposon gag domain containing 4##AK126598|FLJ44635|392490|TPT1-like protein##AY572224|FLJ44635|392490|TPT1-like protein##NM_207422|FLJ44635|392490|TPT1-like protein##NM_001170747|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##NM_006223|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##BC093700|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##BC112281|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##HQ258728|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##AB009690|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##BC005234|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##BC070288|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##BC111394|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##BC104653|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##AK127605|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)##AF143096|PIN4|5303|protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	0.995586	0.0	denovo_WM_7:0:0.441	denovo_WM_7:0:0.441
chr16	81855201	81855356	reg1000866.p1	12.791	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-42348	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-42376	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-42381	+	BC019670 AK315652 AK026740 NM_145168	189790	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	213583	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	213654	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.0	0.0	
chr2	26100337	26100484	reg1000988.p1	12.786	+	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	-204009	-	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-534948	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-535047	-	AB385496 TSC_hg19_v1_chr2_-_26101159	719	-	TSC_hg19_v1_chr2_-_26101174 AB084279	763	-	TSC_hg19_v1_chr2_-_26101321 AB051472 NM_018263	904	-	AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)##AB051472|ASXL2|55252|additional sex combs like 2 (Drosophila)##NM_018263|ASXL2|55252|additional sex combs like 2 (Drosophila)	1.18742	0.0	denovo_WM_7:16:0.658	denovo_WM_7:92:0.530
chr12	27020057	27020201	reg1000930.p1	12.785	+	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	-34049	-	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-671544	+	NM_001135823 AK092925 TSC_hg19_v1_chr12_+_26348312	-671838	+	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	70780	-	TSC_hg19_v1_chr12_-_27091213 NM_018164	71101	-	NM_001171887 NM_001171888 NM_015633 AK001534 TSC_hg19_v1_chr12_+_27091402 BC032143 AF161472	71246	+	AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_001135823|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK092925|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_001171887|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_001171888|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_015633|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK001534|FGFR1OP2|26127|FGFR1 oncogene partner 2##BC032143|FGFR1OP2|26127|FGFR1 oncogene partner 2##AF161472|FGFR1OP2|26127|FGFR1 oncogene partner 2	0.992197	0.0	denovo_WM_7:-15:0.837
chrX	52004483	52004663	reg1000002.p1	12.774	+	NM_001242362 NM_030801 NM_177535 NM_177537 AB058762 BC001207 AK098830 AK289458 AK308365 AB040527 AB040528 AB040529 NM_001098800 AL136582 BC081566 BC063838	-76596	+	BC063838 BC081566 AL136582 AB040527 AB040528 AB040529 NM_001098800 AK098830 AK289458 AK308365 BC001207 AB058762 NM_001242362 NM_030801 NM_177535 NM_177537	-192265	-	TSC_hg19_v1_chrX_+_51636723 NM_001005333 NM_006986 AF258554 AK298574 AK308706 BC014070 AK314053 AK074092 AF217963 AF300328	-367870	+	NM_130777 BC066311 BC009232 AJ318880	107554	+	AB590383 DQ893147 DQ896442 NM_001079538	108584	+	NM_001097592 NM_001097594 NM_001097597 NM_001097604 NM_020411 AF251237 NM_001097593 NM_001097596 NM_001097598 NM_001097605 NM_133430 AJ290447 AJ318879 AJ318878	234340	+	NM_001242362|MAGED4B|81557|melanoma antigen family D, 4B##NM_030801|MAGED4B|81557|melanoma antigen family D, 4B##NM_177535|MAGED4B|81557|melanoma antigen family D, 4B##NM_177537|MAGED4B|81557|melanoma antigen family D, 4B##AB058762|MAGED4B|81557|melanoma antigen family D, 4B##BC001207|MAGED4B|81557|melanoma antigen family D, 4B##AK098830|MAGED4B|81557|melanoma antigen family D, 4B##AK289458|MAGED4B|81557|melanoma antigen family D, 4B##AK308365|MAGED4B|81557|melanoma antigen family D, 4B##AB040527|MAGED4B|81557|melanoma antigen family D, 4B##AB040528|MAGED4B|81557|melanoma antigen family D, 4B##AB040529|MAGED4B|81557|melanoma antigen family D, 4B##NM_001098800|MAGED4|728239|melanoma antigen family D, 4##AL136582|MAGED4B|81557|melanoma antigen family D, 4B##BC081566|MAGED4B|81557|melanoma antigen family D, 4B##BC063838|MAGED4B|81557|melanoma antigen family D, 4B##BC063838|MAGED4B|81557|melanoma antigen family D, 4B##BC081566|MAGED4B|81557|melanoma antigen family D, 4B##AL136582|MAGED4B|81557|melanoma antigen family D, 4B##AB040527|MAGED4B|81557|melanoma antigen family D, 4B##AB040528|MAGED4B|81557|melanoma antigen family D, 4B##AB040529|MAGED4B|81557|melanoma antigen family D, 4B##NM_001098800|MAGED4|728239|melanoma antigen family D, 4##AK098830|MAGED4B|81557|melanoma antigen family D, 4B##AK289458|MAGED4B|81557|melanoma antigen family D, 4B##AK308365|MAGED4B|81557|melanoma antigen family D, 4B##BC001207|MAGED4B|81557|melanoma antigen family D, 4B##AB058762|MAGED4B|81557|melanoma antigen family D, 4B##NM_001242362|MAGED4B|81557|melanoma antigen family D, 4B##NM_030801|MAGED4B|81557|melanoma antigen family D, 4B##NM_177535|MAGED4B|81557|melanoma antigen family D, 4B##NM_177537|MAGED4B|81557|melanoma antigen family D, 4B##NM_001005333|MAGED1|9500|melanoma antigen family D, 1##NM_006986|MAGED1|9500|melanoma antigen family D, 1##AF258554|MAGED1|9500|melanoma antigen family D, 1##AK298574|MAGED1|9500|melanoma antigen family D, 1##AK308706|MAGED1|9500|melanoma antigen family D, 1##BC014070|MAGED1|9500|melanoma antigen family D, 1##AK314053|MAGED1|9500|melanoma antigen family D, 1##AK074092|MAGED1|9500|melanoma antigen family D, 1##AF217963|MAGED1|9500|melanoma antigen family D, 1##AF300328|MAGED1|9500|melanoma antigen family D, 1##NM_130777|XAGE2|9502|X antigen family, member 2##BC066311|XAGE2|9502|X antigen family, member 2##BC009232|XAGE2|9502|X antigen family, member 2##AJ318880|XAGE2|9502|X antigen family, member 2##DQ893147|XAGE2|9502|X antigen family, member 2##DQ896442|XAGE2|9502|X antigen family, member 2##NM_001079538|XAGE2B|728242|X antigen family, member 2B##NM_001097592|XAGE1A|653219|X antigen family, member 1A##NM_001097594|XAGE1B|653220|X antigen family, member 1B##NM_001097597|XAGE1C|653048|X antigen family, member 1C##NM_001097604|XAGE1E|653067|X antigen family, member 1E##NM_020411|XAGE1D|9503|X antigen family, member 1D##AF251237|XAGE1D|9503|X antigen family, member 1D##NM_001097593|XAGE1A|653219|X antigen family, member 1A##NM_001097596|XAGE1B|653220|X antigen family, member 1B##NM_001097598|XAGE1C|653048|X antigen family, member 1C##NM_001097605|XAGE1E|653067|X antigen family, member 1E##NM_133430|XAGE1D|9503|X antigen family, member 1D##AJ290447|XAGE1D|9503|X antigen family, member 1D##AJ318879|XAGE1D|9503|X antigen family, member 1D##AJ318878|XAGE1D|9503|X antigen family, member 1D	0.0	0.0	
chr3	45637849	45638005	reg1000837.p1	12.762	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	-1656	+	TSC_hg19_v1_chr3_+_45635397 M80651	-2342	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-207863	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	92806	+	TSC_hg19_v1_chr3_+_45730846 AK291142	92930	+	TSC_hg19_v1_chr3_+_45730887 AB020658 AK301248	92962	+	BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##M80651|LIMD1|8994|LIM domains containing 1##AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK291142|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AB020658|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK301248|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	0.983664	0.0	denovo_WM_7:-23:0.906
chr4	930044	930198	reg1000858.p1	12.762	+	TSC_hg19_v1_chr4_+_926247 AK293641 AK090848 AX746646 AK309132 BC047738 BC005158 NM_032326 BC063488 BC095416 AL834199	-3891	+	TSC_hg19_v1_chr4_-_926182 BC001290 BC085005 NM_005255	-3957	-	AK309413 TSC_hg19_v1_chr4_-_926116	-4006	-	AB384698 GU727647 L38707 TSC_hg19_v1_chr4_-_967325	37176	-	TSC_hg19_v1_chr4_-_967335 AB209503 BC063801 NM_001347	37215	-	TSC_hg19_v1_chr4_+_980831 M74715 NM_000203 AK125223 BC099922 AK291816 BC029959 AB208901	50701	+	AK090848|TMEM175|84286|transmembrane protein 175##AK309132|TMEM175|84286|transmembrane protein 175##BC047738|TMEM175|84286|transmembrane protein 175##BC005158|TMEM175|84286|transmembrane protein 175##NM_032326|TMEM175|84286|transmembrane protein 175##BC063488|TMEM175|84286|transmembrane protein 175##BC095416|TMEM175|84286|transmembrane protein 175##AL834199|TMEM175|84286|transmembrane protein 175##BC001290|GAK|2580|cyclin G associated kinase##BC085005|GAK|2580|cyclin G associated kinase##NM_005255|GAK|2580|cyclin G associated kinase##AK309413|GAK|2580|cyclin G associated kinase##GU727647|DGKQ|1609|diacylglycerol kinase, theta 110kDa##L38707|DGKQ|1609|diacylglycerol kinase, theta 110kDa##AB209503|DGKQ|1609|diacylglycerol kinase, theta 110kDa##BC063801|DGKQ|1609|diacylglycerol kinase, theta 110kDa##NM_001347|DGKQ|1609|diacylglycerol kinase, theta 110kDa##M74715|IDUA|3425|iduronidase, alpha-L-##NM_000203|IDUA|3425|iduronidase, alpha-L-##AK125223|IDUA|3425|iduronidase, alpha-L-##BC099922|IDUA|3425|iduronidase, alpha-L-##AK291816|IDUA|3425|iduronidase, alpha-L-##BC029959|IDUA|3425|iduronidase, alpha-L-##AB208901|IDUA|3425|iduronidase, alpha-L-	0.998911	0.0	denovo_WM_7:-18:0.942
chr17	26605436	26605556	reg1000731.p1	12.755	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-235495	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-235843	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-385105	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	40697	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	56990	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	57207	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	1.984398	0.0	denovo_WM_7:8:0.746	denovo_WM_7:-82:0.237	denovo_WM_7:-83:0.237	denovo_WM_7:-84:0.237	denovo_WM_7:-85:0.237
chr7	48676883	48677063	reg1000538.p1	12.752	+	AK126220 AY204751 BX647273 NM_152701	-465918	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	-548018	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	-548173	+	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	1136297	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	1455851	-	NM_001161834	1458708	+	AK126220|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##AY204751|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##NM_152701|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72	1.300426	0.0	
chr20	48286250	48286396	reg1000874.p3	12.750	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-101634	-	BC110572 BC110573 NM_004975	-187144	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-391128	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	43907	-	AB004550 TSC_hg19_v1_chr20_-_48330359	44033	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	44143	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.998456	0.0	denovo_WM_7:-79:0.310	denovo_WM_7:-80:0.310	denovo_WM_7:-81:0.310
chr3	169553935	169554069	reg1000966.p1	12.749	+	NM_001080460	-14293	+	AK293661 AK095125 NM_001172779 NM_001172780 NM_153353 TSC_hg19_v1_chr3_-_169530693	-23430	-	TSC_hg19_v1_chr3_-_169530306 BC032841 AK295065 BC028610 AK302466	-23682	-	HQ258307 BC117401 BC143569 BC143582 AY358138 AK097338 NM_024727 AK026912	33655	-	BX648991 BX648534 BX648989 BX537903 NM_182610	75418	+	TSC_hg19_v1_chr3_+_169684598 NM_003262 AK294504 BC003677 BC007040 BC012035 BX648539 D87127 U93239 EU832302 EU832386	130586	+	NM_001080460|LRRIQ4|344657|leucine-rich repeats and IQ motif containing 4##AK293661|LRRC34|151827|leucine rich repeat containing 34##AK095125|LRRC34|151827|leucine rich repeat containing 34##NM_001172779|LRRC34|151827|leucine rich repeat containing 34##NM_001172780|LRRC34|151827|leucine rich repeat containing 34##NM_153353|LRRC34|151827|leucine rich repeat containing 34##BC032841|LRRC34|151827|leucine rich repeat containing 34##AK295065|LRRC34|151827|leucine rich repeat containing 34##BC028610|LRRC34|151827|leucine rich repeat containing 34##AK302466|LRRC34|151827|leucine rich repeat containing 34##HQ258307|LRRC31|79782|leucine rich repeat containing 31##BC117401|LRRC31|79782|leucine rich repeat containing 31##BC143569|LRRC31|79782|leucine rich repeat containing 31##BC143582|LRRC31|79782|leucine rich repeat containing 31##AY358138|LRRC31|79782|leucine rich repeat containing 31##AK097338|LRRC31|79782|leucine rich repeat containing 31##NM_024727|LRRC31|79782|leucine rich repeat containing 31##AK026912|LRRC31|79782|leucine rich repeat containing 31##BX648991|SAMD7|344658|sterile alpha motif domain containing 7##BX648534|SAMD7|344658|sterile alpha motif domain containing 7##BX648989|SAMD7|344658|sterile alpha motif domain containing 7##BX537903|SAMD7|344658|sterile alpha motif domain containing 7##NM_182610|SAMD7|344658|sterile alpha motif domain containing 7##NM_003262|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC003677|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC007040|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC012035|SEC62|7095|SEC62 homolog (S. cerevisiae)##BX648539|SEC62|7095|SEC62 homolog (S. cerevisiae)##D87127|SEC62|7095|SEC62 homolog (S. cerevisiae)##U93239|SEC62|7095|SEC62 homolog (S. cerevisiae)##EU832302|SEC62|7095|SEC62 homolog (S. cerevisiae)##EU832386|SEC62|7095|SEC62 homolog (S. cerevisiae)	0.996728	0.0	denovo_WM_7:-21:0.527	denovo_WM_7:-22:0.470
chr17	15862685	15862828	reg1000782.p1	12.746	+	TSC_hg19_v1_chr17_+_15848443 M97759 BC025722 AB464451 DQ891714 DQ894891 CU693036 AY136748	-14264	+	NM_000676 X68487	-14526	+	NM_178571 AK292544 AK315847 BC028414 BC047400	-227163	+	BC105128 BC112107 NM_017775 TSC_hg19_v1_chr17_+_15902780 AK056878	40009	+	DQ530600 AB464424 TSC_hg19_v1_chr17_-_15902988 BC094855 BC018807 BC044842 BC089386 BC066344 NM_001042697 NM_001042698	40213	-	TSC_hg19_v1_chr17_+_15903137 AK055780 AK297783 BC073796 BC011698	40401	+	M97759|ADORA2B|136|adenosine A2b receptor##BC025722|ADORA2B|136|adenosine A2b receptor##DQ891714|ADORA2B|136|adenosine A2b receptor##DQ894891|ADORA2B|136|adenosine A2b receptor##AY136748|ADORA2B|136|adenosine A2b receptor##NM_000676|ADORA2B|136|adenosine A2b receptor##X68487|ADORA2B|136|adenosine A2b receptor##NM_178571|TBC1D26|353149|TBC1 domain family, member 26##AK292544|TBC1D28|254272|TBC1 domain family, member 28##AK315847|TBC1D26|353149|TBC1 domain family, member 26##BC028414|TBC1D26|353149|TBC1 domain family, member 26##BC047400|TBC1D26|353149|TBC1 domain family, member 26##BC105128|TTC19|54902|tetratricopeptide repeat domain 19##BC112107|TTC19|54902|tetratricopeptide repeat domain 19##NM_017775|TTC19|54902|tetratricopeptide repeat domain 19##AK056878|TTC19|54902|tetratricopeptide repeat domain 19##DQ530600|ZSWIM7|125150|zinc finger, SWIM-type containing 7##BC094855|ZSWIM7|125150|zinc finger, SWIM-type containing 7##BC018807|ZSWIM7|125150|zinc finger, SWIM-type containing 7##BC044842|ZSWIM7|125150|zinc finger, SWIM-type containing 7##BC089386|ZSWIM7|125150|zinc finger, SWIM-type containing 7##BC066344|ZSWIM7|125150|zinc finger, SWIM-type containing 7##NM_001042697|ZSWIM7|125150|zinc finger, SWIM-type containing 7##NM_001042698|ZSWIM7|125150|zinc finger, SWIM-type containing 7##AK055780|TTC19|54902|tetratricopeptide repeat domain 19##AK297783|TTC19|54902|tetratricopeptide repeat domain 19##BC073796|TTC19|54902|tetratricopeptide repeat domain 19##BC011698|TTC19|54902|tetratricopeptide repeat domain 19	0.997398	0.0	
chr8	95959440	95959592	reg1000812.p3	12.742	+	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-52064	-	TSC_hg19_v1_chr8_+_95835588 BC136754 BC144396 BC144397	-123816	+	TSC_hg19_v1_chr8_+_95835522 BC099915 AB161944 NM_017864	-123968	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	2141	-	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	77788	+	TSC_hg19_v1_chr8_+_96145948 NM_024613	186429	+	BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##BC136754|INTS8|55656|integrator complex subunit 8##BC144396|INTS8|55656|integrator complex subunit 8##BC144397|INTS8|55656|integrator complex subunit 8##BC099915|INTS8|55656|integrator complex subunit 8##AB161944|INTS8|55656|integrator complex subunit 8##NM_017864|INTS8|55656|integrator complex subunit 8##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.994137	0.042465	denovo_WM_7:4:0.459	denovo_WM_7:5:0.459
chr12	6643450	6643588	reg1000767.p2	12.739	+	TSC_hg19_v1_chr12_+_6603297 BC028182 AK022511 NM_014865	-40225	+	AK125155 AK303310 TSC_hg19_v1_chr12_+_6603270 AK128354	-40253	+	TSC_hg19_v1_chr12_+_6602542 D63880 BC016913	-40970	+	TSC_hg19_v1_chr12_+_6643683 AF261085 NM_002046 AK308198 AK299448 BC009081 BC013310 M33197 BC025925 BC029618 X53778 AB062273 AY007133 BC004109 BC083511 BC029340 BC001601 BC020308 BC026907	143	+	TSC_hg19_v1_chr12_+_6643982 M17851 AY633612 BC023632 DQ891557 DQ894744 AB463693 CU679249 J02642 BT006893 CR407671	463	+	M36164 TSC_hg19_v1_chr12_+_6647482	3898	+	BC028182|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK022511|NCAPD2|9918|non-SMC condensin I complex, subunit D2##NM_014865|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK125155|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK303310|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK128354|NCAPD2|9918|non-SMC condensin I complex, subunit D2##D63880|NCAPD2|9918|non-SMC condensin I complex, subunit D2##BC016913|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AF261085|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##NM_002046|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AK308198|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AK299448|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC009081|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC013310|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M33197|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC025925|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC029618|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##X53778|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AB062273|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY007133|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC004109|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC083511|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC029340|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC001601|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC020308|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC026907|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M17851|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY633612|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC023632|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ891557|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ894744|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##J02642|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BT006893|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##CR407671|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M36164|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase	0.0	0.0	
chr19	8333559	8333676	reg1000723.p1	12.738	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-59369	+	AB384635 AB053450 BC153882 NM_032447	-121242	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-215670	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	39592	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	52640	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	52669	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	2.973437	0.0	denovo_WM_7:-67:0.251	denovo_WM_7:-68:0.201	denovo_WM_7:-104:0.209	denovo_WM_7:-105:0.260
chr3	95440959	95441108	reg1000947.p1	12.738	+	AK122674 NM_001195643	-1658967	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-1659189	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-1659289	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	1092397	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	1717438	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	2042567	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.995615	0.0	denovo_WM_7:17:0.441	denovo_WM_7:18:0.441
chr17	57078768	57078948	reg1000810.p2	12.735	+	AB028995 AF260269 BC151228 NM_014906 TSC_hg19_v1_chr17_+_56833235 BC136290 BC143845 AF520614	-245564	+	TSC_hg19_v1_chr17_+_56833220 AK289966	-245641	+	TSC_hg19_v1_chr17_+_56769962 AF029669 AK290487 BC073161 NM_002876 NM_058216 BC064578 BC093930 BC101485 BC143259 BC000667 AF029670 AB528656 BT007339 AK129738 AK303363	-308857	+	TSC_hg19_v1_chr17_-_57184098 AF213365 AK289674 BX537955	105215	-	BC036012 TSC_hg19_v1_chr17_-_57184114	105256	-	TSC_hg19_v1_chr17_-_57184116 AK292459	105281	-	AB028995|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF260269|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC151228|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##NM_014906|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC136290|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC143845|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF520614|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AK289966|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF029669|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK290487|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC073161|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_002876|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_058216|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC093930|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC101485|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC143259|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC000667|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF029670|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BT007339|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK303363|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF213365|TRIM37|4591|tripartite motif containing 37##AK289674|TRIM37|4591|tripartite motif containing 37##BX537955|TRIM37|4591|tripartite motif containing 37##BC036012|TRIM37|4591|tripartite motif containing 37##AK292459|TRIM37|4591|tripartite motif containing 37	0.997926	0.0	denovo_WM_7:-34:0.719
chr1	9718420	9718578	reg1000663.p1	12.726	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-6695	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-69543	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-118863	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	165396	-	TSC_hg19_v1_chr1_-_9884023 AK304813	165522	-	TSC_hg19_v1_chr1_-_9884024 BC033902	165545	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	1.996359	0.0	denovo_WM_7:-44:0.239	denovo_WM_7:-45:0.239	denovo_WM_7:-46:0.239	denovo_WM_7:-47:0.239
chr1	160232845	160232999	reg1000804.p1	12.717	+	TSC_hg19_v1_chr1_-_160232340 NM_015726	-585	-	TSC_hg19_v1_chr1_-_160232278 AK303188	-646	-	BC111063 BC013107 TSC_hg19_v1_chr1_-_160232242 AK026481 AK312690 CR749801	-694	-	AB062286 AB528487 BT006879 DQ891417 DQ894591 BC000496 AB018541 TSC_hg19_v1_chr1_-_160254921 AK294940 AK300368	21993	-	X75535 TSC_hg19_v1_chr1_-_160254924 AK303099 NM_001193644 NM_002857	22015	-	AB385218 TSC_hg19_v1_chr1_-_160313020	80067	-	NM_015726|DCAF8|50717|DDB1 and CUL4 associated factor 8##AK303188|DCAF8|50717|DDB1 and CUL4 associated factor 8##BC111063|DCAF8|50717|DDB1 and CUL4 associated factor 8##BC013107|DCAF8|50717|DDB1 and CUL4 associated factor 8##AK026481|DCAF8|50717|DDB1 and CUL4 associated factor 8##AK312690|DCAF8|50717|DDB1 and CUL4 associated factor 8##CR749801|DCAF8|50717|DDB1 and CUL4 associated factor 8##AB062286|PEX19|5824|peroxisomal biogenesis factor 19##BT006879|PEX19|5824|peroxisomal biogenesis factor 19##DQ891417|PEX19|5824|peroxisomal biogenesis factor 19##DQ894591|PEX19|5824|peroxisomal biogenesis factor 19##BC000496|PEX19|5824|peroxisomal biogenesis factor 19##AB018541|PEX19|5824|peroxisomal biogenesis factor 19##AK300368|PEX19|5824|peroxisomal biogenesis factor 19##X75535|PEX19|5824|peroxisomal biogenesis factor 19##AK303099|PEX19|5824|peroxisomal biogenesis factor 19##NM_001193644|PEX19|5824|peroxisomal biogenesis factor 19##NM_002857|PEX19|5824|peroxisomal biogenesis factor 19	0.997928	0.0	denovo_WM_7:15:0.385	denovo_WM_7:17:0.384
chr22	42320460	42320617	reg1000769.p2	12.713	+	NM_001207020	-9868	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-91267	+	TSC_hg19_v1_chr22_+_42229253 BC056158 U02031 BC051385 CT841522 AK299914	-91337	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	2261	-	EU035297 NM_001110215	15684	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	22585	-	NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC056158|SREBF2|6721|sterol regulatory element binding transcription factor 2##U02031|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051385|SREBF2|6721|sterol regulatory element binding transcription factor 2##CT841522|SREBF2|6721|sterol regulatory element binding transcription factor 2##AK299914|SREBF2|6721|sterol regulatory element binding transcription factor 2##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M	0.996888	0.0	
chr2	191513213	191513393	reg1000884.p2	12.707	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-113837	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-113876	-	AK098085 TSC_hg19_v1_chr2_+_191301120	-212233	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	663	+	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	232243	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	232254	+	NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK098085|MFSD6|54842|major facilitator superfamily domain containing 6##NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase	1.657776	0.0	
chr20	32400899	32401040	reg1000834.p2	12.703	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	-1749	+	TSC_hg19_v1_chr20_+_32399127 NM_176812	-1883	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-81173	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	180510	+	TSC_hg19_v1_chr20_+_32581567 AK226085	180618	+	TSC_hg19_v1_chr20_+_32581716 BC103753 AK299766	180735	+	AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##AK226085|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##BC103753|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##AK299766|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.997095	0.0	denovo_WM_7:-11:0.424	denovo_WM_7:-12:0.424
chr21	43640442	43640593	reg1000957.p1	12.701	+	AK298491 AF323664 NM_207174	-549	+	TSC_hg19_v1_chr21_+_43639249 AK292152 BC029158 NM_004915 NM_016818 AF323663 EU832827 GQ129336 X91249 DQ891343 EU176570	-1224	+	AF323662 NM_207629	-4331	+	TSC_hg19_v1_chr21_+_43710190 AF038175	69696	+	L08044 DQ891963 DQ895153 L15203 BC017859 TSC_hg19_v1_chr21_-_43735520	94974	-	NM_003226 AF432265	95215	-	AK298491|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323664|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207174|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AK292152|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##BC029158|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_004915|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_016818|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323663|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##EU832827|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##GQ129336|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##X91249|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##DQ891343|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##EU176570|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323662|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207629|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF038175|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##L08044|TFF3|7033|trefoil factor 3 (intestinal)##DQ891963|TFF3|7033|trefoil factor 3 (intestinal)##DQ895153|TFF3|7033|trefoil factor 3 (intestinal)##L15203|TFF3|7033|trefoil factor 3 (intestinal)##BC017859|TFF3|7033|trefoil factor 3 (intestinal)##NM_003226|TFF3|7033|trefoil factor 3 (intestinal)##AF432265|TFF3|7033|trefoil factor 3 (intestinal)	0.992584	0.0	denovo_WM_7:17:0.210	denovo_WM_7:19:0.661
chr17	26368346	26368526	reg1000526.p1	12.693	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-148045	-	BC130283 BC144126 U05810 L09210 X73029 AF068236 AK304252 NM_000625 TSC_hg19_v1_chr17_-_26127556	-240921	-	U31511 TSC_hg19_v1_chr17_-_26127402	-241038	-	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	1217	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	1565	+	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	277757	+	AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##BC130283|NOS2|4843|nitric oxide synthase 2, inducible##BC144126|NOS2|4843|nitric oxide synthase 2, inducible##U05810|NOS2|4843|nitric oxide synthase 2, inducible##L09210|NOS2|4843|nitric oxide synthase 2, inducible##X73029|NOS2|4843|nitric oxide synthase 2, inducible##AF068236|NOS2|4843|nitric oxide synthase 2, inducible##AK304252|NOS2|4843|nitric oxide synthase 2, inducible##NM_000625|NOS2|4843|nitric oxide synthase 2, inducible##U31511|NOS2|4843|nitric oxide synthase 2, inducible##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK024686|NLK|51701|nemo-like kinase##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97	1.005784	0.0	denovo_WM_7:9:0.703
chr2	187338986	187339166	reg1000894.p1	12.690	+	NM_173651	-735722	+	BC136602 TSC_hg19_v1_chr2_+_185463544	-1875584	+	BC142612 TSC_hg19_v1_chr2_+_185463319	-1875771	+	TSC_hg19_v1_chr2_+_187350986 AF220184 NM_018471 AK298615 AK001901 AK297658 AF289586	11854	+	TSC_hg19_v1_chr2_+_187351010 BC012336 AF161421 AF109366	11934	+	TSC_hg19_v1_chr2_+_187351051 BC021102 EU176353 AB587394 CU676824	11994	+	NM_173651|FSIP2|401024|fibrous sheath interacting protein 2##BC136602|ZNF804A|91752|zinc finger protein 804A##BC142612|ZNF804A|91752|zinc finger protein 804A##AF220184|ZC3H15|55854|zinc finger CCCH-type containing 15##NM_018471|ZC3H15|55854|zinc finger CCCH-type containing 15##AK298615|ZC3H15|55854|zinc finger CCCH-type containing 15##AK001901|ZC3H15|55854|zinc finger CCCH-type containing 15##AK297658|ZC3H15|55854|zinc finger CCCH-type containing 15##AF289586|ZC3H15|55854|zinc finger CCCH-type containing 15##BC012336|ZC3H15|55854|zinc finger CCCH-type containing 15##AF161421|ZC3H15|55854|zinc finger CCCH-type containing 15##AF109366|ZC3H15|55854|zinc finger CCCH-type containing 15##BC021102|ZC3H15|55854|zinc finger CCCH-type containing 15##EU176353|ZC3H15|55854|zinc finger CCCH-type containing 15	1.016978	0.0	denovo_WM_7:-85:0.527	denovo_WM_7:-86:0.470
chr6	42540360	42540512	reg1001038.p1	12.677	+	TSC_hg19_v1_chr6_+_42531956 AY061884 CU687884	-8432	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	-8659	+	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	-8686	+	M62958 M73531 NM_000322 DQ426889	149902	-	TSC_hg19_v1_chr6_-_42713800 BT007002	173360	-	TSC_hg19_v1_chr6_-_42713833 BC020170 AK312681 U61234	173392	-	AY061884|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##M62958|PRPH2|5961|peripherin 2 (retinal degeneration, slow)##M73531|PRPH2|5961|peripherin 2 (retinal degeneration, slow)##NM_000322|PRPH2|5961|peripherin 2 (retinal degeneration, slow)##BT007002|TBCC|6903|tubulin folding cofactor C##BC020170|TBCC|6903|tubulin folding cofactor C##AK312681|TBCC|6903|tubulin folding cofactor C##U61234|TBCC|6903|tubulin folding cofactor C	0.994583	0.0	denovo_WM_7:23:0.929
chr22	44587201	44587358	reg1000768.p2	12.666	+	NM_001137606 TSC_hg19_v1_chr22_+_44577256	-10023	+	AK307299 TSC_hg19_v1_chr22_+_44577227 AK311264	-10055	+	NM_022141 AK225929 AK307294 BC034406 AF237772	-10467	+	NM_001099294	121451	-	AK126304 TSC_hg19_v1_chr22_-_44893199	305917	-	AB463098 CU013037 CU013325 CR456439 TSC_hg19_v1_chr22_-_44893542	306210	-	NM_001137606|PARVG|64098|parvin, gamma##AK307299|PARVG|64098|parvin, gamma##NM_022141|PARVG|64098|parvin, gamma##AK225929|PARVG|64098|parvin, gamma##AK307294|PARVG|64098|parvin, gamma##BC034406|PARVG|64098|parvin, gamma##AF237772|PARVG|64098|parvin, gamma##NM_001099294|KIAA1644|85352|KIAA1644##AK126304|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like##CU013037|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like##CU013325|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like##CR456439|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like	1.764376	0.0	denovo_WM_7:-6:0.258	denovo_WM_7:-7:0.495	denovo_WM_7:7:0.281	denovo_WM_7:8:0.538
chr12	31756556	31756717	reg1000672.p1	12.663	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-12718	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-277497	-	TSC_hg19_v1_chr12_-_31479085 AF212220	-277535	-	AK290248 NM_001135864	43457	+	BC039535 NM_173802	55484	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	55978	+	BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20	0.956728	0.0	denovo_WM_7:11:0.768
chr11	124633211	124633373	reg1000711.p1	12.661	+	CU677755 DQ891768 DQ894952 BC016868 TSC_hg19_v1_chr11_-_124632187 AF361746 AY358382 AK075396 AK301160 AK314710 NM_138961	-1156	-	AY358897 TSC_hg19_v1_chr11_-_124622152 BC012567	-11141	-	TSC_hg19_v1_chr11_-_124622090 AK000460 BC007313 NM_014312	-11196	-	TSC_hg19_v1_chr11_-_124670282 AK303902	36977	-	TSC_hg19_v1_chr11_-_124670286 BC064919 AK026995 NM_024631	37027	-	AY509035 TSC_hg19_v1_chr11_+_124735327 AK056544 NM_022370 AK291045	102033	+	DQ891768|ESAM|90952|endothelial cell adhesion molecule##DQ894952|ESAM|90952|endothelial cell adhesion molecule##BC016868|ESAM|90952|endothelial cell adhesion molecule##AF361746|ESAM|90952|endothelial cell adhesion molecule##AY358382|ESAM|90952|endothelial cell adhesion molecule##AK075396|ESAM|90952|endothelial cell adhesion molecule##AK301160|ESAM|90952|endothelial cell adhesion molecule##AK314710|ESAM|90952|endothelial cell adhesion molecule##NM_138961|ESAM|90952|endothelial cell adhesion molecule##AY358897|VSIG2|23584|V-set and immunoglobulin domain containing 2##BC012567|VSIG2|23584|V-set and immunoglobulin domain containing 2##AK000460|VSIG2|23584|V-set and immunoglobulin domain containing 2##BC007313|VSIG2|23584|V-set and immunoglobulin domain containing 2##NM_014312|VSIG2|23584|V-set and immunoglobulin domain containing 2##AK303902|C11orf61|79684|chromosome 11 open reading frame 61##BC064919|C11orf61|79684|chromosome 11 open reading frame 61##AK026995|C11orf61|79684|chromosome 11 open reading frame 61##NM_024631|C11orf61|79684|chromosome 11 open reading frame 61##AY509035|ROBO3|64221|roundabout, axon guidance receptor, homolog 3 (Drosophila)##NM_022370|ROBO3|64221|roundabout, axon guidance receptor, homolog 3 (Drosophila)##AK291045|ROBO3|64221|roundabout, axon guidance receptor, homolog 3 (Drosophila)	1.990912	0.968137	denovo_WM_7:5:0.973	denovo_WM_7:20:0.954	CTCF.p2:-64:0.968
chr5	96088211	96088355	reg1000356.p1	12.659	+	NM_173060 AL832349 AB026049 AK303900 TSC_hg19_v1_chr5_+_96038509 AK298541 AK299402 AK300624 AK314290 AK315146 AL832174 BX648397 AK303836 AK297879	-49748	+	TSC_hg19_v1_chr5_+_95998728 AK296919	-89566	+	BC013579 TSC_hg19_v1_chr5_+_95998220	-90088	+	TSC_hg19_v1_chr5_-_96143614 AF106037 AF183569 AF222340 AY358590 AK291636 AY028806 AY028807	55339	-	TSC_hg19_v1_chr5_-_96143701 NM_001040458 NM_016442	55507	-	AK310535 BC030775 NM_001198541	61542	-	NM_173060|CAST|831|calpastatin##AL832349|CAST|831|calpastatin##AB026049|CAST|831|calpastatin##AK303900|CAST|831|calpastatin##AK298541|CAST|831|calpastatin##AK299402|CAST|831|calpastatin##AK300624|CAST|831|calpastatin##AK314290|CAST|831|calpastatin##AK315146|CAST|831|calpastatin##AL832174|CAST|831|calpastatin##BX648397|CAST|831|calpastatin##AK303836|CAST|831|calpastatin##AK297879|CAST|831|calpastatin##AK296919|CAST|831|calpastatin##BC013579|CAST|831|calpastatin##AF106037|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF183569|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF222340|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY358590|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK291636|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028806|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028807|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001040458|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_016442|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1	1.994213	0.975092	denovo_WM_7:-7:0.328	denovo_WM_7:7:0.332	denovo_WM_7:-8:0.492	denovo_WM_7:8:0.496	CTCF.p2:58:0.975
chr15	30367647	30367752	reg1000826.p1	12.658	+	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	-253076	-	AK304758 TSC_hg19_v1_chr15_-_30114336	-253357	-	NM_015307	-504773	-	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	318013	-	TSC_hg19_v1_chr15_+_30918372 BC071990	550687	+	BC105788 NM_001039841	551179	+	BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B	0.998968	0.966966	CTCF.p2:-19:0.967	denovo_WM_7:37:0.310	denovo_WM_7:38:0.310	denovo_WM_7:39:0.310
chr17	80170191	80170371	reg1000892.p1	12.654	+	TSC_hg19_v1_chr17_-_80056105 BC063242 NM_004104	-114177	-	TSC_hg19_v1_chr17_-_80056081 AB209988 U29344	-114214	-	TSC_hg19_v1_chr17_-_80054282 AY451392 U26644 AB384663	-116009	-	TSC_hg19_v1_chr17_-_80170705 BC040264 BC110997 NM_198082	454	-	NM_001042422 NM_001206950 TSC_hg19_v1_chr17_+_80186285	16068	+	NM_004207 TSC_hg19_v1_chr17_+_80186920 AK127090 AK223040 U81800	16635	+	BC063242|FASN|2194|fatty acid synthase##NM_004104|FASN|2194|fatty acid synthase##AB209988|FASN|2194|fatty acid synthase##U29344|FASN|2194|fatty acid synthase##AY451392|FASN|2194|fatty acid synthase##U26644|FASN|2194|fatty acid synthase##BC040264|CCDC57|284001|coiled-coil domain containing 57##BC110997|CCDC57|284001|coiled-coil domain containing 57##NM_198082|CCDC57|284001|coiled-coil domain containing 57##NM_001042422|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##NM_001206950|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##NM_004207|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##AK223040|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##U81800|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)	1.019343	0.0	
chr4	103352535	103352715	reg1000865.p1	12.647	+	TSC_hg19_v1_chr4_-_103266640 AF193052 BC012125 NM_001135146	-85991	-	TSC_hg19_v1_chr4_-_103266398 NM_001135147	-86223	-	TSC_hg19_v1_chr4_-_103266365 AB040120 NM_022154 AK304274	-86299	-	TSC_hg19_v1_chr4_-_103422436 BC033876	69830	-	TSC_hg19_v1_chr4_+_103422515 BC051765 NM_001165412 NM_003998	69873	+	TSC_hg19_v1_chr4_+_103422554 M58603	69930	+	AF193052|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##BC012125|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##NM_001135146|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##NM_001135147|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##AB040120|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##NM_022154|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##AK304274|SLC39A8|64116|solute carrier family 39 (zinc transporter), member 8##BC051765|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##NM_001165412|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##NM_003998|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M58603|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1	0.702663	0.617857	CTCF.p2:72:0.594
chr7	149232477	149232638	reg1000689.p1	12.646	+	TSC_hg19_v1_chr7_-_149194899 NM_001163474 NM_152557 AK128244	-37659	-	TSC_hg19_v1_chr7_-_149194830 AK291814	-37717	-	TSC_hg19_v1_chr7_-_149194795 BC068505 BC035586	-37772	-	AB590454 AK295771 TSC_hg19_v1_chr7_-_149321793 AK022762	89185	-	TSC_hg19_v1_chr7_-_149321856 BC047675	89297	-	TSC_hg19_v1_chr7_+_149412043 BC142722 BC146667 AB058765 BC150330 BC152409 NM_032534	179530	+	NM_001163474|ZNF746|155061|zinc finger protein 746##NM_152557|ZNF746|155061|zinc finger protein 746##AK128244|ZNF746|155061|zinc finger protein 746##AK291814|ZNF746|155061|zinc finger protein 746##BC068505|ZNF746|155061|zinc finger protein 746##BC035586|ZNF746|155061|zinc finger protein 746##AK295771|ZNF767|79970|zinc finger family member 767##AK022762|ZNF767|79970|zinc finger family member 767##BC047675|ZNF767|79970|zinc finger family member 767##BC142722|KRBA1|84626|KRAB-A domain containing 1##BC146667|KRBA1|84626|KRAB-A domain containing 1##AB058765|KRBA1|84626|KRAB-A domain containing 1##BC150330|KRBA1|84626|KRAB-A domain containing 1##BC152409|KRBA1|84626|KRAB-A domain containing 1##NM_032534|KRBA1|84626|KRAB-A domain containing 1	2.984799	0.0	denovo_WM_7:7:0.688	denovo_WM_7:8:0.262	denovo_WM_7:22:0.431	denovo_WM_7:23:0.461	denovo_WM_7:37:0.202	denovo_WM_7:38:0.597
chr19	3371226	3371401	reg1000721.p1	12.643	+	TSC_hg19_v1_chr19_+_3366607 X92857 AB590220 CU680224 DQ893655 DQ895795	-4698	+	TSC_hg19_v1_chr19_+_3366580 AK297867 AK297825	-4733	+	TSC_hg19_v1_chr19_+_3366562 NM_001245002 NM_001245004 NM_005597 BC012120	-4758	+	CU680225 TSC_hg19_v1_chr19_-_3462913	91526	-	TSC_hg19_v1_chr19_-_3480524 BC146979 BC146984 NM_001136503	109213	-	BC002817 NM_031304 TSC_hg19_v1_chr19_-_3500673	129336	-	X92857|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##DQ893655|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##DQ895795|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK297867|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK297825|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_001245002|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_001245004|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_005597|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##BC012120|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##BC146979|C19orf77|284422|chromosome 19 open reading frame 77##BC146984|C19orf77|284422|chromosome 19 open reading frame 77##NM_001136503|C19orf77|284422|chromosome 19 open reading frame 77##BC002817|DOHH|83475|deoxyhypusine hydroxylase/monooxygenase##NM_031304|DOHH|83475|deoxyhypusine hydroxylase/monooxygenase	0.996443	0.0	
chr19	7406053	7406186	reg1000827.p2	12.630	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-112159	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-306568	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-336404	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	53888	+	TSC_hg19_v1_chr19_+_7460061 AB011093	53958	+	AK127045 NM_001130955	98454	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.0	0.82871	CTCF.p2:52:0.829
chr17	5145832	5145943	reg1000742.p1	12.624	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-7786	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-50507	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-50714	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	39779	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	177038	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	177073	+	DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein	0.999635	0.0	
chr1	3582683	3582798	reg1000575.p2	12.620	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-13614	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-16124	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-41131	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	24518	+	AK310432 NM_001204192 AK302118	31875	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	81177	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	1.795757	0.0	denovo_WM_7:-29:0.404	denovo_WM_7:-44:0.517
chr8	129252605	129252785	reg1000825.p1	12.620	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-445912	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-504205	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-504370	+	AB042405 NM_031415	1546438	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1699220	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1699311	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	1.928675	0.0	denovo_WM_7:-42:0.756
chr20	48417429	48417609	reg1000850.p2	12.610	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-87053	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-87163	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-87289	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	11789	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	11899	+	AK289644 NM_001135773	112756	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	0.993377	0.0	
chr10	91403654	91403790	reg1000851.p1	12.609	+	AF355198 AY027662 AY027663 NM_138316 NM_148978	-84	-	CR936657 AK127303 NM_213606	-108411	-	U34605 TSC_hg19_v1_chr10_+_91174502 AK312358 AK293346	-229234	+	TSC_hg19_v1_chr10_-_91404973 AK125428	1221	-	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	1602	-	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	57653	+	AF355198|PANK1|53354|pantothenate kinase 1##AY027662|PANK1|53354|pantothenate kinase 1##AY027663|PANK1|53354|pantothenate kinase 1##NM_138316|PANK1|53354|pantothenate kinase 1##NM_148978|PANK1|53354|pantothenate kinase 1##CR936657|SLC16A12|387700|solute carrier family 16, member 12 (monocarboxylic acid transporter 12)##AK127303|SLC16A12|387700|solute carrier family 16, member 12 (monocarboxylic acid transporter 12)##NM_213606|SLC16A12|387700|solute carrier family 16, member 12 (monocarboxylic acid transporter 12)##U34605|IFIT5|24138|interferon-induced protein with tetratricopeptide repeats 5##AK312358|IFIT5|24138|interferon-induced protein with tetratricopeptide repeats 5##AK293346|IFIT5|24138|interferon-induced protein with tetratricopeptide repeats 5##AK125428|PANK1|53354|pantothenate kinase 1##AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B	0.016793	0.0	
chr6	87907384	87907550	reg1000847.p1	12.604	+	TSC_hg19_v1_chr6_+_87865282 NM_015021 AK123473 BX537746 CR936740	-42178	+	V00518 AK023644 AK311972 BC055080 BC010957 BC020782 NM_000735 NM_001252383	-102649	-	NM_000865	-260444	+	TSC_hg19_v1_chr6_+_87964930 AL832366	57513	+	BC016386 TSC_hg19_v1_chr6_+_87967437	59968	+	BC063594 AY684300 TSC_hg19_v1_chr6_+_87969709	62197	+	NM_015021|ZNF292|23036|zinc finger protein 292##AK123473|ZNF292|23036|zinc finger protein 292##BX537746|ZNF292|23036|zinc finger protein 292##V00518|CGA|1081|glycoprotein hormones, alpha polypeptide##AK311972|CGA|1081|glycoprotein hormones, alpha polypeptide##BC055080|CGA|1081|glycoprotein hormones, alpha polypeptide##BC010957|CGA|1081|glycoprotein hormones, alpha polypeptide##BC020782|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000735|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_001252383|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000865|HTR1E|3354|5-hydroxytryptamine (serotonin) receptor 1E##AL832366|ZNF292|23036|zinc finger protein 292##BC016386|ZNF292|23036|zinc finger protein 292##BC063594|ZNF292|23036|zinc finger protein 292##AY684300|ZNF292|23036|zinc finger protein 292	0.999636	0.0	
chr21	45225531	45225711	reg1000604.p2	12.600	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-16136	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	-16206	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-29392	-	TSC_hg19_v1_chr21_+_45285029 AY358704	59439	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	59502	+	AK300562 NM_001037553	119657	+	AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.986059	0.0	denovo_WM_7:42:0.895
chr19	40941298	40941416	reg1000807.p2	12.594	+	BC002670 AF366402 AF117959 AK222970 AK223011 TSC_hg19_v1_chr19_-_40931900 AK074652 NM_013376	-9452	-	AF321191 AF321192 NM_020956 NM_181882 BC067266	-22086	-	AK302301 AK301713 AK292228 BC034501 NM_144685 AK057380	-45270	-	AF192529 NM_013368	7147	-	TSC_hg19_v1_chr19_-_40950200 BC014061 AK074604	8854	-	TSC_hg19_v1_chr19_-_40950243 BC050643 NM_203344	8902	-	BC002670|SERTAD1|29950|SERTA domain containing 1##AF366402|SERTAD1|29950|SERTA domain containing 1##AF117959|SERTAD1|29950|SERTA domain containing 1##AK222970|SERTAD1|29950|SERTA domain containing 1##AK223011|SERTAD1|29950|SERTA domain containing 1##AK074652|SERTAD1|29950|SERTA domain containing 1##NM_013376|SERTAD1|29950|SERTA domain containing 1##AF321191|PRX|57716|periaxin##AF321192|PRX|57716|periaxin##NM_020956|PRX|57716|periaxin##NM_181882|PRX|57716|periaxin##BC067266|PRX|57716|periaxin##AK302301|HIPK4|147746|homeodomain interacting protein kinase 4##AK301713|HIPK4|147746|homeodomain interacting protein kinase 4##AK292228|HIPK4|147746|homeodomain interacting protein kinase 4##BC034501|HIPK4|147746|homeodomain interacting protein kinase 4##NM_144685|HIPK4|147746|homeodomain interacting protein kinase 4##AK057380|HIPK4|147746|homeodomain interacting protein kinase 4##AF192529|SERTAD3|29946|SERTA domain containing 3##NM_013368|SERTAD3|29946|SERTA domain containing 3##BC014061|SERTAD3|29946|SERTA domain containing 3##AK074604|SERTAD3|29946|SERTA domain containing 3##BC050643|SERTAD3|29946|SERTA domain containing 3##NM_203344|SERTAD3|29946|SERTA domain containing 3	0.992107	0.0	
chr17	70000907	70001070	reg1000706.p1	12.592	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1835292	+	BC033038 NM_170742	-1899994	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1929558	+	TSC_hg19_v1_chr17_-_70116937 AL833139	115950	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	116171	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	116182	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	1.996954	0.0	denovo_WM_7:10:0.754	denovo_WM_7:25:0.452	denovo_WM_7:26:0.536
chr19	49319256	49319391	reg1000868.p1	12.584	+	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	-5075	-	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-59905	+	D87935 D87936 D87937 NM_000148	-60677	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	20451	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	20600	-	BC064601 AB208908 BC025259 AY007233 BC024157 NM_001161354 NM_020904	52473	-	AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC064601|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AB208908|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC025259|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AY007233|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC024157|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_001161354|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_020904|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	0.981924	0.0	
chr9	109521345	109521525	reg1000811.p1	12.584	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-1064517	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-1064582	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-1096678	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	103929	+	TSC_hg19_v1_chr9_+_109686439 CR749850	165034	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	524097	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	1.650777	0.0	denovo_WM_7:22:0.665	denovo_WM_7:50:0.766	denovo_WM_7:51:0.220
chr4	44496121	44496247	reg1001068.p1	12.583	+	AK123347 NM_198353	-45361	-	AK298831 HQ258617 TSC_hg19_v1_chr4_-_44450559 BC132743 BC136793	-45631	-	AB528853 NM_001080476	-1600903	+	AK096895 BC103995 BC103996 NM_182592	157473	-	TSC_hg19_v1_chr4_+_44680469 NM_021927 BX647242 BC036768 BC012338 AK225314 AK023282 AK308667	184276	+	TSC_hg19_v1_chr4_-_44728574 AK296051 AB209904 AK055639 AY173948 AK129655 AK308920 AF247786 NM_138335	232380	-	AK123347|KCTD8|386617|potassium channel tetramerisation domain containing 8##NM_198353|KCTD8|386617|potassium channel tetramerisation domain containing 8##AK298831|KCTD8|386617|potassium channel tetramerisation domain containing 8##HQ258617|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC132743|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC136793|KCTD8|386617|potassium channel tetramerisation domain containing 8##NM_001080476|GRXCR1|389207|glutaredoxin, cysteine rich 1##AK096895|YIPF7|285525|Yip1 domain family, member 7##BC103995|YIPF7|285525|Yip1 domain family, member 7##BC103996|YIPF7|285525|Yip1 domain family, member 7##NM_182592|YIPF7|285525|Yip1 domain family, member 7##NM_021927|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##BX647242|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##BC036768|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##BC012338|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK225314|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK023282|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK308667|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK296051|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AB209904|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AK055639|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AY173948|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AK129655|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AF247786|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##NM_138335|GNPDA2|132789|glucosamine-6-phosphate deaminase 2	2.964672	0.109438	denovo_WM_7:-40:0.409	denovo_WM_7:-41:0.409	denovo_WM_7:-67:0.677	denovo_WM_7:-68:0.245	denovo_WM_7:-82:0.638	denovo_WM_7:-83:0.281
chr8	90741586	90741711	reg1000649.p2	12.582	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1401902	-	BC035011 AL833507 BC111778 AK093094 AX747918 NM_152418	-1855389	-	AK093121 AX747937 BC117326 BC117328 NM_173538	-2862975	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	28382	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	28636	+	AF061326 NM_004337	172447	+	AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##BC035011|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AL833507|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##BC111778|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093094|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##NM_152418|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093121|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117326|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117328|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_173538|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2	0.998167	0.0	
chr3	171897598	171897768	reg1000849.p1	12.580	+	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-139346	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-140225	+	TSC_hg19_v1_chr3_+_171757437 AK127826	-140249	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	268540	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	343495	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	531207	-	AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1	1.697944	0.0	denovo_WM_7:-11:0.572	denovo_WM_7:-26:0.595
chr13	33243317	33243463	reg1001124.p1	12.575	+	TSC_hg19_v1_chr13_+_33160686 BC039256 U95825 BC070274 AK299340	-82707	+	TSC_hg19_v1_chr13_+_33160649 AB023196	-82751	+	TSC_hg19_v1_chr13_+_33160610 AL137201	-82772	+	TSC_hg19_v1_chr13_+_33590478 AB005142 NM_004795	347133	+	AY082590 BC046563 NM_001243466 NM_178007	516825	-	AL049801 AY082591 AK091804 NM_001243474 NM_052851	536774	-	BC039256|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##U95825|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##BC070274|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AK299340|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AB023196|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AL137201|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AB005142|KL|9365|klotho##NM_004795|KL|9365|klotho##AY082590|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##BC046563|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243466|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178007|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AL049801|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082591|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK091804|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243474|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_052851|STARD13|90627|StAR-related lipid transfer (START) domain containing 13	1.032327	0.664261	CTCF.p2:-11:0.664	denovo_WM_7:33:0.567
chr16	23961380	23961547	reg1000798.p1	12.574	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-113957	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-114068	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-114131	+	BC037899 NM_006539 AK095553	305411	+	AK055453 TSC_hg19_v1_chr16_+_24267474	306011	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	306235	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	1.367298	0.0	denovo_WM_7:-1:0.222	denovo_WM_7:-2:0.237	denovo_WM_7:13:0.347
chr2	175357833	175357958	reg1000242.p1	12.573	+	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-6098	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-97337	+	TSC_hg19_v1_chr2_+_175260466 NM_001193528 NM_024583 AK296558 AK295357 AK295357 AK057912 AK057912 BC007344	-97418	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	104586	-	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	141402	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	189859	-	BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##NM_001193528|SCRN3|79634|secernin 3##NM_024583|SCRN3|79634|secernin 3##AK296558|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1	0.810221	0.0	denovo_WM_7:25:0.790
chr4	79559937	79560077	reg1000920.p1	12.558	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	-87099	+	NM_005139 TSC_hg19_v1_chr4_+_79472790	-87237	+	BC006366 TSC_hg19_v1_chr4_-_79103287	-456722	-	TSC_hg19_v1_chr4_+_79697501 AL137661	137476	+	NM_017593 NM_198892 TSC_hg19_v1_chr4_+_79697532	137529	+	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	137616	+	BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3##NM_005139|ANXA3|306|annexin A3##AL137661|BMP2K|55589|BMP2 inducible kinase##NM_017593|BMP2K|55589|BMP2 inducible kinase##NM_198892|BMP2K|55589|BMP2 inducible kinase##AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase	0.97352	0.0	denovo_WM_7:-4:0.928
chr12	9803388	9803529	reg1000784.p1	12.547	+	TSC_hg19_v1_chr12_+_9800760 AK096274	-2562	+	BC027885 BC113997 BC114516 U11276 NM_002258 AK292022	-42962	-	TSC_hg19_v1_chr12_-_9600810 BC035635 BC128040 BC111733	-202660	-	BC063128 NM_001197318 NM_013269 AK310150 NM_001004419 AK310554 AK313554 BC019883 AF133299 AF285087 CU676474 FN813349 FN813350 FN813351 NM_001197317 NM_001197319	18809	+	AF518873 BC093857 BC093859 NM_001253748 NM_001253750 NM_172004	82418	-	AY238518 CU675505 DQ893175 DQ896474 L07555 AK291869 AK303174 AK303383 BC007037 NM_001781 Z22576	109997	-	AK096274|LOC374443|374443|CLR pseudogene##BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC035635|DDX12P|440081|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC063128|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197318|CLEC2D|29121|C-type lectin domain family 2, member D##NM_013269|CLEC2D|29121|C-type lectin domain family 2, member D##AK310150|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001004419|CLEC2D|29121|C-type lectin domain family 2, member D##AK310554|CLEC2D|29121|C-type lectin domain family 2, member D##AK313554|CLEC2D|29121|C-type lectin domain family 2, member D##BC019883|CLEC2D|29121|C-type lectin domain family 2, member D##AF133299|CLEC2D|29121|C-type lectin domain family 2, member D##AF285087|CLEC2D|29121|C-type lectin domain family 2, member D##FN813349|CLEC2D|29121|C-type lectin domain family 2, member D##FN813350|CLEC2D|29121|C-type lectin domain family 2, member D##FN813351|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197317|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197319|CLEC2D|29121|C-type lectin domain family 2, member D##AF518873|CLECL1|160365|C-type lectin-like 1##BC093857|CLECL1|160365|C-type lectin-like 1##BC093859|CLECL1|160365|C-type lectin-like 1##NM_001253748|CLECL1|160365|C-type lectin-like 1##NM_001253750|CLECL1|160365|C-type lectin-like 1##NM_172004|CLECL1|160365|C-type lectin-like 1##AY238518|CD69|969|CD69 molecule##DQ893175|CD69|969|CD69 molecule##DQ896474|CD69|969|CD69 molecule##L07555|CD69|969|CD69 molecule##AK291869|CD69|969|CD69 molecule##AK303174|CD69|969|CD69 molecule##AK303383|CD69|969|CD69 molecule##BC007037|CD69|969|CD69 molecule##NM_001781|CD69|969|CD69 molecule##Z22576|CD69|969|CD69 molecule	0.999148	0.0	denovo_WM_7:-47:0.739
chr18	3013464	3013605	reg1000929.p2	12.547	+	BC152448 D87436 NM_014646	-1590	-	AB026706 TSC_hg19_v1_chr18_+_2907037	-106533	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	-166503	+	BC116183 BC116184 TSC_hg19_v1_chr18_-_3219875	206326	-	TSC_hg19_v1_chr18_-_3219987 AJ621424 AK125322 NM_003803 NM_019856	206511	-	BC031972 NM_006471	233993	+	BC152448|LPIN2|9663|lipin 2##D87436|LPIN2|9663|lipin 2##NM_014646|LPIN2|9663|lipin 2##AB026706|EMILIN2|84034|elastin microfibril interfacer 2##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##BC116183|MYOM1|8736|myomesin 1, 185kDa##BC116184|MYOM1|8736|myomesin 1, 185kDa##AJ621424|MYOM1|8736|myomesin 1, 185kDa##AK125322|MYOM1|8736|myomesin 1, 185kDa##NM_003803|MYOM1|8736|myomesin 1, 185kDa##NM_019856|MYOM1|8736|myomesin 1, 185kDa##BC031972|MYL12A|10627|myosin, light chain 12A, regulatory, non-sarcomeric##NM_006471|MYL12A|10627|myosin, light chain 12A, regulatory, non-sarcomeric	0.017965	0.0	
chr8	6548068	6548227	reg1000968.p2	12.544	+	HQ258258 AF187858 AB009865 BC126200 BC126202 BC143902 AF218015 BC022490 AK075219 AK225698 AK290070 AK310171 AK312541 NM_001118887 NM_001118888 NM_001147 TSC_hg19_v1_chr8_-_6420798 AJ289781	-127456	-	AK301702 TSC_hg19_v1_chr8_+_6264167	-283975	+	NM_001172574 NM_001172575 NM_024596 BC056195 BC030702 AK308387 TSC_hg19_v1_chr8_+_6264158	-284012	+	TSC_hg19_v1_chr8_+_6565896 NM_018361 BC080537	17744	+	TSC_hg19_v1_chr8_+_6565916 AF375789 BC023550	17793	+	TSC_hg19_v1_chr8_+_6566162 AL136587 AB528060 AM392899 AM393058 DQ893436 DQ896747 AK002072 AK310545 BC068519	18036	+	HQ258258|ANGPT2|285|angiopoietin 2##AF187858|ANGPT2|285|angiopoietin 2##AB009865|ANGPT2|285|angiopoietin 2##BC126200|ANGPT2|285|angiopoietin 2##BC126202|ANGPT2|285|angiopoietin 2##BC143902|ANGPT2|285|angiopoietin 2##AF218015|ANGPT2|285|angiopoietin 2##BC022490|ANGPT2|285|angiopoietin 2##AK075219|ANGPT2|285|angiopoietin 2##AK225698|ANGPT2|285|angiopoietin 2##AK290070|ANGPT2|285|angiopoietin 2##AK310171|ANGPT2|285|angiopoietin 2##AK312541|ANGPT2|285|angiopoietin 2##NM_001118887|ANGPT2|285|angiopoietin 2##NM_001118888|ANGPT2|285|angiopoietin 2##NM_001147|ANGPT2|285|angiopoietin 2##AJ289781|ANGPT2|285|angiopoietin 2##AK301702|MCPH1|79648|microcephalin 1##NM_001172574|MCPH1|79648|microcephalin 1##NM_001172575|MCPH1|79648|microcephalin 1##NM_024596|MCPH1|79648|microcephalin 1##BC056195|MCPH1|79648|microcephalin 1##BC030702|MCPH1|79648|microcephalin 1##AK308387|MCPH1|79648|microcephalin 1##NM_018361|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC080537|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AF375789|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC023550|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AL136587|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM392899|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM393058|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ893436|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ896747|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK002072|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK310545|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC068519|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	0.731983	0.0	denovo_WM_7:20:0.513
chr12	68759293	68759437	reg1000854.p2	12.543	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-33259	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-112061	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-139813	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	245281	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	245330	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	245343	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.0	0.0	
chr19	39050495	39050638	reg1000707.p2	12.540	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-126222	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-133694	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-156665	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	58022	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	59147	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	59250	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.99204	0.0	denovo_WM_7:6:0.837
chr17	28983122	28983302	reg1000903.p1	12.534	+	BC096718 BC098126 BC098273 NM_015594	-96629	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-178779	+	AK316409 NM_001199775 AK302878	-275697	+	TSC_hg19_v1_chr17_+_29058664 BC047718	75476	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	168463	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	168551	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	0.993573	0.0	
chr12	15148872	15149005	reg1000803.p2	12.528	+	NM_006205 DQ980604 D45399	-22972	+	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	-34390	-	CU688844 BC030218 AY358536 NM_152321 AK056677	-57477	-	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	225412	-	NM_002848 NM_030667 TSC_hg19_v1_chr12_+_15475264 AB209729	326322	+	AK289784 TSC_hg19_v1_chr12_+_15475476 BC035960 U20489 BC126201 BC126203 Z48541 CU690232	326613	+	NM_006205|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##DQ980604|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##D45399|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_002848|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030667|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AB209729|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK289784|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC035960|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U20489|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126201|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126203|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##Z48541|PTPRO|5800|protein tyrosine phosphatase, receptor type, O	0.987465	0.982247	CTCF.p2:8:0.982	denovo_WM_7:-41:0.451	denovo_WM_7:-42:0.451
chr2	188033911	188034068	reg1000881.p1	12.522	+	AK128006 BC031094 NM_182521	-320093	-	TSC_hg19_v1_chr2_+_187558788 AK091423 AK289737 AX746973 BC060872 NM_177454 AF361495 CU687488	-475213	+	AK302990 NM_001144999	-569058	+	DQ280491 U17473 L76380 AK291630 AK292998 DQ280490 NM_005795	278957	-	J03225 AF021834 TSC_hg19_v1_chr2_-_188419163 AK313562 BC015514 BC014332	385121	-	TSC_hg19_v1_chr2_-_188419185 NM_001032281 NM_006287	385212	-	AK128006|ZSWIM2|151112|zinc finger, SWIM-type containing 2##BC031094|ZSWIM2|151112|zinc finger, SWIM-type containing 2##NM_182521|ZSWIM2|151112|zinc finger, SWIM-type containing 2##AK091423|FAM171B|165215|family with sequence similarity 171, member B##AK289737|FAM171B|165215|family with sequence similarity 171, member B##BC060872|FAM171B|165215|family with sequence similarity 171, member B##NM_177454|FAM171B|165215|family with sequence similarity 171, member B##AF361495|FAM171B|165215|family with sequence similarity 171, member B##AK302990|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##NM_001144999|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##DQ280491|CALCRL|10203|calcitonin receptor-like##U17473|CALCRL|10203|calcitonin receptor-like##L76380|CALCRL|10203|calcitonin receptor-like##AK291630|CALCRL|10203|calcitonin receptor-like##AK292998|CALCRL|10203|calcitonin receptor-like##NM_005795|CALCRL|10203|calcitonin receptor-like##J03225|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AF021834|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AK313562|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC015514|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC014332|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_001032281|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_006287|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)	0.988043	0.0	denovo_WM_7:-47:0.969
chr8	98650818	98650973	reg1000918.p1	12.518	+	TSC_hg19_v1_chr8_-_98290193 AK091445 AX746987	-360676	-	TSC_hg19_v1_chr8_-_98290171 BC045630 NM_033512	-360722	-	CU692280 AB384285 AB051537 TSC_hg19_v1_chr8_-_98290135	-360787	-	TSC_hg19_v1_chr8_+_98656416 BC045642 NM_178812 BC001815	5482	+	TSC_hg19_v1_chr8_+_98656437 BC014977 AF501310	5564	+	BC022825 TSC_hg19_v1_chr8_+_98656510 BC009324 AF411226 AY082966 AY974040	5718	+	AK091445|TSPYL5|85453|TSPY-like 5##BC045630|TSPYL5|85453|TSPY-like 5##NM_033512|TSPYL5|85453|TSPY-like 5##AB051537|TSPYL5|85453|TSPY-like 5##BC045642|MTDH|92140|metadherin##NM_178812|MTDH|92140|metadherin##BC001815|MTDH|92140|metadherin##BC014977|MTDH|92140|metadherin##AF501310|MTDH|92140|metadherin##BC022825|MTDH|92140|metadherin##BC009324|MTDH|92140|metadherin##AF411226|MTDH|92140|metadherin##AY082966|MTDH|92140|metadherin##AY974040|MTDH|92140|metadherin	0.989626	0.0	denovo_WM_7:19:0.887
chr2	97524113	97524237	reg1000353.p2	12.514	+	TSC_hg19_v1_chr2_-_97523744 AB528054 CU689148 AF151034 BC031303 AB209367 AK312193 NM_016466	-433	-	AF492401 AY196212 BC107056 AK057011 AK092564 AX747600 NM_144994	-14430	-	TSC_hg19_v1_chr2_+_97482006 BC037272 AK126847 NM_017623 NM_199078 BC007199 AF216965 AK000025 CU675553	-41693	+	TSC_hg19_v1_chr2_-_97535634 BC109104 BC109103	11456	-	TSC_hg19_v1_chr2_-_97535818 AY358842 NM_017789	11586	-	AF151068 NM_001172667	36701	-	AF151034|ANKRD39|51239|ankyrin repeat domain 39##BC031303|ANKRD39|51239|ankyrin repeat domain 39##AK312193|ANKRD39|51239|ankyrin repeat domain 39##NM_016466|ANKRD39|51239|ankyrin repeat domain 39##AF492401|ANKRD23|200539|ankyrin repeat domain 23##AY196212|ANKRD23|200539|ankyrin repeat domain 23##BC107056|ANKRD23|200539|ankyrin repeat domain 23##AK057011|ANKRD23|200539|ankyrin repeat domain 23##AK092564|ANKRD23|200539|ankyrin repeat domain 23##NM_144994|ANKRD23|200539|ankyrin repeat domain 23##BC037272|CNNM3|26505|cyclin M3##AK126847|CNNM3|26505|cyclin M3##NM_017623|CNNM3|26505|cyclin M3##NM_199078|CNNM3|26505|cyclin M3##BC007199|CNNM3|26505|cyclin M3##AF216965|CNNM3|26505|cyclin M3##AK000025|CNNM3|26505|cyclin M3##BC109104|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##BC109103|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##AY358842|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##NM_017789|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##AF151068|FAM178B|51252|family with sequence similarity 178, member B##NM_001172667|FAM178B|51252|family with sequence similarity 178, member B	0.996141	0.0	
chr17	46231177	46231314	reg1000871.p1	12.512	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-46093	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-46260	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-52424	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	276293	-	TSC_hg19_v1_chr17_-_46507604 BC039040	276372	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	377026	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	0.989433	0.709076	denovo_WM_7:19:0.288	denovo_WM_7:20:0.287	denovo_WM_7:21:0.287	CTCF.p2:-29:0.709
chr10	63760022	63760178	reg1000916.p2	12.510	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-98669	+	NM_032199	-99088	+	BC041932 NM_173554	-337382	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	48996	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	268439	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	373943	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.998739	0.0	denovo_WM_7:-5:0.257	denovo_WM_7:-6:0.690
chr12	89991741	89991911	reg1000919.p2	12.510	+	AK297677 NM_001199781 NM_001199782 NM_172240	-71788	-	CU693124 TSC_hg19_v1_chr12_-_89919778 BX647258 AK074772 AK295596 BC026080 EF011619	-72066	-	TSC_hg19_v1_chr12_-_89919208 AK123106 NM_001199777	-72564	-	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	58025	-	TSC_hg19_v1_chr12_+_90102640 BC040326	110861	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	111719	+	AK297677|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199781|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199782|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_172240|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BX647258|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##AK074772|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK295596|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BC026080|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##EF011619|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK123106|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##NM_001199777|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC040326|LOC338758|338758|uncharacterized LOC338758##BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758	1.192628	0.0	
chr19	42773267	42773435	reg1000901.p2	12.510	+	AK300627 TSC_hg19_v1_chr19_-_42759281 AK314278 NM_006494	-14046	-	AB463618 CU692500 DQ893568 DQ896817 TSC_hg19_v1_chr19_-_42759278 BC022231 U15655	-14137	-	TSC_hg19_v1_chr19_-_42746755 BC027984	-26593	-	TSC_hg19_v1_chr19_+_42788616 AF363689 DQ388764 NM_015125 AB527445	15378	+	BC063021 AK291528 NM_199285	32915	+	AB528706 CR407626 TSC_hg19_v1_chr19_-_42806760 D63391 BC007863 BC003016 NM_002573	33309	-	AK300627|ERF|2077|Ets2 repressor factor##AK314278|ERF|2077|Ets2 repressor factor##NM_006494|ERF|2077|Ets2 repressor factor##DQ893568|ERF|2077|Ets2 repressor factor##DQ896817|ERF|2077|Ets2 repressor factor##BC022231|ERF|2077|Ets2 repressor factor##U15655|ERF|2077|Ets2 repressor factor##BC027984|GSK3A|2931|glycogen synthase kinase 3 alpha##AF363689|CIC|23152|capicua homolog (Drosophila)##NM_015125|CIC|23152|capicua homolog (Drosophila)##BC063021|PRR19|284338|proline rich 19##AK291528|PRR19|284338|proline rich 19##NM_199285|PRR19|284338|proline rich 19##CR407626|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##D63391|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC007863|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC003016|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##NM_002573|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)	0.131478	0.0	
chr4	13658220	13658350	reg1001102.p1	12.510	+	TSC_hg19_v1_chr4_-_13629350 BC065546 BC043603 AF528529 NM_148894 BC087835	-28968	-	TSC_hg19_v1_chr4_-_13549425 BC035174 AK058104 BC048110 BC053955	-108871	-	AB463932 AF009801 EU446467 BC111966 NM_001189	-112210	-	BC039114 BC044764 BC047127 TSC_hg19_v1_chr4_-_15003743	1345424	-	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	1345710	-	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	1346012	+	BC065546|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC043603|BOD1L|259282|biorientation of chromosomes in cell division 1-like##AF528529|BOD1L|259282|biorientation of chromosomes in cell division 1-like##NM_148894|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC087835|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC035174|LOC285548|285548|uncharacterized LOC285548##AK058104|LOC285548|285548|uncharacterized LOC285548##BC048110|LOC285548|285548|uncharacterized LOC285548##BC053955|LOC285548|285548|uncharacterized LOC285548##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2##BC039114|LOC441009|441009|uncharacterized LOC441009##BC044764|LOC441009|441009|uncharacterized LOC441009##BC047127|LOC441009|441009|uncharacterized LOC441009##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2	0.991803	0.064591	denovo_WM_7:-33:0.331	denovo_WM_7:-34:0.331	denovo_WM_7:-35:0.331
chr3	169907022	169907133	reg1000910.p1	12.508	+	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	-7549	-	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	-7632	-	TSC_hg19_v1_chr3_+_169755984 AK311293	-151125	+	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	33140	+	TSC_hg19_v1_chr3_+_169940223 BC022016	33152	+	TSC_hg19_v1_chr3_+_169940250 L33881 AK315342 AB590674 AB451443	33288	+	AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK311293|GPR160|26996|G protein-coupled receptor 160##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota##BC022016|PRKCI|5584|protein kinase C, iota##L33881|PRKCI|5584|protein kinase C, iota##AK315342|PRKCI|5584|protein kinase C, iota##AB451443|PRKCI|5584|protein kinase C, iota	0.997168	0.541294	CTCF.p2:8:0.541	denovo_WM_7:-39:0.976
chr6	27110323	27110487	reg1001050.p1	12.508	+	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	-3332	+	TSC_hg19_v1_chr6_+_27100821 AK312124 NM_021064 L19778 BC067782 BC016677 AB590259 DQ891024 DQ894204 DQ894286	-9588	+	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	-9840	-	AB590085 EU446970 TSC_hg19_v1_chr6_-_27114635 AJ223352 BC051872 BC064959 BC108737 BC000893 AK292062 NM_080593	4202	-	BC093849 BC093851 TSC_hg19_v1_chr6_+_27114884 AK312232 AB528147 BC134366 BC148293 NM_080596	4478	+	AK097918 AK314037 NM_005865 AF052514 AK303106 AB590521	105091	+	BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i##AK312124|HIST1H2AG|8969|histone cluster 1, H2ag##NM_021064|HIST1H2AG|8969|histone cluster 1, H2ag##L19778|HIST1H2AG|8969|histone cluster 1, H2ag##BC067782|HIST1H2AG|8969|histone cluster 1, H2ag##BC016677|HIST1H2AG|8969|histone cluster 1, H2ag##DQ891024|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894204|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894286|HIST1H2AG|8969|histone cluster 1, H2ag##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj##EU446970|HIST1H2BK|85236|histone cluster 1, H2bk##AJ223352|HIST1H2BK|85236|histone cluster 1, H2bk##BC051872|HIST1H2BK|85236|histone cluster 1, H2bk##BC064959|HIST1H2BK|85236|histone cluster 1, H2bk##BC108737|HIST1H2BK|85236|histone cluster 1, H2bk##BC000893|HIST1H2BK|85236|histone cluster 1, H2bk##AK292062|HIST1H2BK|85236|histone cluster 1, H2bk##NM_080593|HIST1H2BK|85236|histone cluster 1, H2bk##BC093849|HIST1H2AH|85235|histone cluster 1, H2ah##BC093851|HIST1H2AH|85235|histone cluster 1, H2ah##AK312232|HIST1H2AH|85235|histone cluster 1, H2ah##BC134366|HIST1H2AH|85235|histone cluster 1, H2ah##BC148293|HIST1H2AH|85235|histone cluster 1, H2ah##NM_080596|HIST1H2AH|85235|histone cluster 1, H2ah##AK097918|PRSS16|10279|protease, serine, 16 (thymus)##AK314037|PRSS16|10279|protease, serine, 16 (thymus)##NM_005865|PRSS16|10279|protease, serine, 16 (thymus)##AF052514|PRSS16|10279|protease, serine, 16 (thymus)##AK303106|PRSS16|10279|protease, serine, 16 (thymus)	0.998455	0.0	
chr1	111991930	111992085	reg1000949.p1	12.506	+	AK022860 AK223189 BC009411 TSC_hg19_v1_chr1_-_111991879 BC011778 AK296163 AK298179 AB073603	-138	-	AB529135 AF478464 CU679349 AF052183 AY225316 TSC_hg19_v1_chr1_-_111991843 BC016946 NM_024102 BC001679 BC006477	-187	-	NM_001688	-265	+	TSC_hg19_v1_chr1_+_111992072 BC016350	52	+	TSC_hg19_v1_chr1_+_111992086 AK291077	78	+	TSC_hg19_v1_chr1_+_111992097 D28383 BC005366 AK311287	87	+	AK022860|WDR77|79084|WD repeat domain 77##AK223189|WDR77|79084|WD repeat domain 77##BC009411|WDR77|79084|WD repeat domain 77##BC011778|WDR77|79084|WD repeat domain 77##AK296163|WDR77|79084|WD repeat domain 77##AK298179|WDR77|79084|WD repeat domain 77##AB073603|WDR77|79084|WD repeat domain 77##AF478464|WDR77|79084|WD repeat domain 77##AF052183|WDR77|79084|WD repeat domain 77##AY225316|WDR77|79084|WD repeat domain 77##BC016946|WDR77|79084|WD repeat domain 77##NM_024102|WDR77|79084|WD repeat domain 77##BC001679|WDR77|79084|WD repeat domain 77##BC006477|WDR77|79084|WD repeat domain 77##NM_001688|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC016350|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK291077|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##D28383|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC005366|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1	0.0	0.0	
chr10	96968623	96968767	reg1000875.p1	12.498	+	AK126134 NM_207321	-14739	+	M21942 M21941 DQ891400 DQ894579 M17397 M17398 AK303813 Y00498 AK292753 AK293327 AK293328 AK298401 AK315823 BC020596 NM_000770 NM_001198853 NM_001198854 NM_001198855	-139532	-	TSC_hg19_v1_chr10_+_96698414 AK289420 AK298458 BC020754 NM_000771 BC070317 M61855 M61857 BC125054 D00173 M21939 M15331 S46963	-270253	+	AJ310549 CU674454 EU446864 AB464004 TSC_hg19_v1_chr10_-_97050757 BC018755 AK314792 BC000915 NM_020992	82087	-	AM393082 NM_001034954 NM_001034955 NM_001034956 NM_001034957 NM_006434	232220	-	TSC_hg19_v1_chr10_-_97321129 AB037717 BC152463 AK022468 AK300407 AK304753 AL117472 AM260536 NM_015385 NM_024991	352444	-	AK126134|C10orf129|142827|chromosome 10 open reading frame 129##NM_207321|C10orf129|142827|chromosome 10 open reading frame 129##M21942|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M21941|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ891400|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ894579|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17397|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17398|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK303813|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##Y00498|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK292753|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293327|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293328|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK298401|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK315823|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##BC020596|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_000770|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198853|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198854|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198855|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK289420|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##AK298458|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##BC020754|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##NM_000771|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##BC070317|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M61855|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M61857|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##BC125054|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##D00173|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M21939|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M15331|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##S46963|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##AJ310549|PDLIM1|9124|PDZ and LIM domain 1##EU446864|PDLIM1|9124|PDZ and LIM domain 1##BC018755|PDLIM1|9124|PDZ and LIM domain 1##AK314792|PDLIM1|9124|PDZ and LIM domain 1##BC000915|PDLIM1|9124|PDZ and LIM domain 1##NM_020992|PDLIM1|9124|PDZ and LIM domain 1##AM393082|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034954|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034955|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034956|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034957|SORBS1|10580|sorbin and SH3 domain containing 1##NM_006434|SORBS1|10580|sorbin and SH3 domain containing 1##AB037717|SORBS1|10580|sorbin and SH3 domain containing 1##BC152463|SORBS1|10580|sorbin and SH3 domain containing 1##AK022468|SORBS1|10580|sorbin and SH3 domain containing 1##AK300407|SORBS1|10580|sorbin and SH3 domain containing 1##AK304753|SORBS1|10580|sorbin and SH3 domain containing 1##AL117472|SORBS1|10580|sorbin and SH3 domain containing 1##AM260536|SORBS1|10580|sorbin and SH3 domain containing 1##NM_015385|SORBS1|10580|sorbin and SH3 domain containing 1##NM_024991|SORBS1|10580|sorbin and SH3 domain containing 1	1.491345	0.04711	denovo_WM_7:2:0.209
chr20	32143002	32143155	reg1000860.p2	12.496	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	-65107	+	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	-65242	+	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	-111517	-	BC015066 NM_001039709 NM_005093 AF069747 AF052212	7099	+	DQ080434 NM_080825 BC032818	107037	+	NM_001024675 BC137111 BC137114	111235	+	NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##DQ080434|C20orf144|128864|chromosome 20 open reading frame 144##NM_080825|C20orf144|128864|chromosome 20 open reading frame 144##BC032818|C20orf144|128864|chromosome 20 open reading frame 144##NM_001024675|ACTL10|170487|actin-like 10##BC137111|ACTL10|170487|actin-like 10##BC137114|ACTL10|170487|actin-like 10	0.999092	0.0	denovo_WM_7:6:0.836
chr22	39417057	39417175	reg1000788.p1	12.496	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	-6790	+	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	-6865	+	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	-38685	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	11	+	AK294810 NM_001006666 NM_145298	19524	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	56071	+	CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AK294810|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_001006666|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_145298|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G	0.999297	0.0	
chr13	76023631	76023752	reg1000842.p1	12.490	+	CR749622 TSC_hg19_v1_chr13_-_75901948	-121769	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1315295	-	AF161471 AF113122 NM_007249	-1315702	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	32647	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	88287	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	100233	+	CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	0.992338	0.0	denovo_WM_7:40:0.496	denovo_WM_7:41:0.496
chr10	93056338	93056478	reg1000992.p1	12.486	+	TSC_hg19_v1_chr10_+_92980539 AL832496	-75874	+	TSC_hg19_v1_chr10_+_92980445 NM_032373	-76000	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	-133646	+	BC071762 TSC_hg19_v1_chr10_+_93170064	113650	+	TSC_hg19_v1_chr10_+_93170100 NM_173497 NM_182765 AK295723 AK094625 BC040187 EU832472 EU832551 BX537856	113773	+	AK299392 TSC_hg19_v1_chr10_-_93392761 BC012625	336353	-	AL832496|PCGF5|84333|polycomb group ring finger 5##NM_032373|PCGF5|84333|polycomb group ring finger 5##BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##NM_173497|HECTD2|143279|HECT domain containing 2##NM_182765|HECTD2|143279|HECT domain containing 2##AK295723|HECTD2|143279|HECT domain containing 2##AK094625|HECTD2|143279|HECT domain containing 2##BC040187|HECTD2|143279|HECT domain containing 2##EU832472|HECTD2|143279|HECT domain containing 2##EU832551|HECTD2|143279|HECT domain containing 2##BX537856|HECTD2|143279|HECT domain containing 2##AK299392|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C##BC012625|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C	0.997033	0.0	
chr20	4701330	4701495	reg1000882.p1	12.486	+	NM_000311 NM_001080121 NM_001080122 NM_183079 TSC_hg19_v1_chr20_+_4667101 X82545 AK090575 AK293312 AK295415 AK295943 AK312276 AX746518 BC014544 BC022532 BC012844 M13899 AY008282 NM_001080123	-34436	+	TSC_hg19_v1_chr20_-_4229520 L31772 NM_000678 U03864 S70782	-471822	-	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	-571889	+	AK313404 TSC_hg19_v1_chr20_+_4702555 BC043644 NM_012409 AF187843 AY358985	1122	+	AY154472 NM_170774	94356	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	102782	-	NM_000311|PRNP|5621|prion protein##NM_001080121|PRNP|5621|prion protein##NM_001080122|PRNP|5621|prion protein##NM_183079|PRNP|5621|prion protein##AK090575|PRNP|5621|prion protein##AK293312|PRNP|5621|prion protein##AK295415|PRNP|5621|prion protein##AK295943|PRNP|5621|prion protein##AK312276|PRNP|5621|prion protein##BC014544|PRNP|5621|prion protein##BC022532|PRNP|5621|prion protein##BC012844|PRNP|5621|prion protein##M13899|PRNP|5621|prion protein##AY008282|PRNP|5621|prion protein##NM_001080123|PRNP|5621|prion protein##L31772|ADRA1D|146|adrenergic, alpha-1D-, receptor##NM_000678|ADRA1D|146|adrenergic, alpha-1D-, receptor##U03864|ADRA1D|146|adrenergic, alpha-1D-, receptor##S70782|ADRA1D|146|adrenergic, alpha-1D-, receptor##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase##AK313404|PRND|23627|prion protein 2 (dublet)##BC043644|PRND|23627|prion protein 2 (dublet)##NM_012409|PRND|23627|prion protein 2 (dublet)##AF187843|PRND|23627|prion protein 2 (dublet)##AY358985|PRND|23627|prion protein 2 (dublet)##AY154472|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_170774|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2	0.925801	0.0	denovo_WM_7:-19:0.622	denovo_WM_7:-20:0.304
chr13	99857063	99857202	reg1001201.p1	12.483	+	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-4013	+	TSC_hg19_v1_chr13_-_99852951 BC043515 AK097488	-4165	-	AK290342 NM_001144072	-4454	+	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	53482	-	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	102566	-	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	296568	+	AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC043515|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK097488|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK290342|UBAC2|337867|UBA domain containing 2##NM_001144072|UBAC2|337867|UBA domain containing 2##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2	0.998679	0.0	
chr13	92556328	92556498	reg1000899.p1	12.475	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	-505509	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-4231544	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-6182974	-	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	1323014	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	2575413	-	TSC_hg19_v1_chr13_-_95248407 AY544125 AF048686 AK313251 BC033675	2692016	-	BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AY544125|TGDS|23483|TDP-glucose 4,6-dehydratase##AF048686|TGDS|23483|TDP-glucose 4,6-dehydratase##AK313251|TGDS|23483|TDP-glucose 4,6-dehydratase##BC033675|TGDS|23483|TDP-glucose 4,6-dehydratase	1.53043	0.0	denovo_WM_7:-4:0.511	denovo_WM_7:-19:0.512
chr2	203882918	203883065	reg1001114.p1	12.471	+	TSC_hg19_v1_chr2_+_203879597 AK096293 NM_001114132 BC132950 BC137214 BC144532 BC144533 AB053318	-3367	+	TSC_hg19_v1_chr2_+_203776997 BC021999 AL834188 NM_001104586 AY032876 AK310640 AK308171 AK022737 AK295499 AK299366 AK304014 AK316432 AK295703 AB053310 NM_024744	-105968	+	AK056092 NM_018256	-106043	-	AB209471 TSC_hg19_v1_chr2_+_204055414	172418	+	NM_177538	220172	+	TSC_hg19_v1_chr2_+_204103740 AF183412 AK297082 BC093022 BC033752 BC020616 AL832998 AY359068 AK307931 DQ890918 DQ894068 DQ894069 CU676580	220730	+	NM_001114132|NBEAL1|65065|neurobeachin-like 1##BC132950|NBEAL1|65065|neurobeachin-like 1##BC137214|NBEAL1|65065|neurobeachin-like 1##BC144532|NBEAL1|65065|neurobeachin-like 1##BC144533|NBEAL1|65065|neurobeachin-like 1##AB053318|NBEAL1|65065|neurobeachin-like 1##BC021999|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AL834188|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##NM_001104586|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AY032876|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK310640|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK308171|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK022737|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK295499|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK299366|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK304014|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK316432|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK295703|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AB053310|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##NM_024744|ALS2CR8|79800|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8##AK056092|WDR12|55759|WD repeat domain 12##NM_018256|WDR12|55759|WD repeat domain 12##AB209471|RPL12|6136|ribosomal protein L12##NM_177538|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AF183412|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK297082|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC093022|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC033752|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC020616|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AL832998|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AY359068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK307931|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ890918|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894069|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1	0.595792	0.0	denovo_WM_7:-23:0.490
chr16	4323308	4323401	reg1000600.p1	12.469	+	TSC_hg19_v1_chr16_-_4323057 AK309301	-289	-	NM_003223 S73885 TSC_hg19_v1_chr16_-_4323025	-342	-	X57435 DQ893617 DQ895293 CR541726 CU679751 AB464303 TSC_hg19_v1_chr16_-_4322885 BC010576	-526	-	AF325914 NM_032575 AB463687	58897	+	AK095566 TSC_hg19_v1_chr16_+_4385160	61797	+	TSC_hg19_v1_chr16_-_4401268 AF151894 AF349455 BC005024 AK026514 NM_016069	77964	-	AK309301|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##NM_003223|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##S73885|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##X57435|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ893617|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ895293|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##CR541726|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##BC010576|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##AF325914|GLIS2|84662|GLIS family zinc finger 2##NM_032575|GLIS2|84662|GLIS family zinc finger 2##AK095566|GLIS2|84662|GLIS family zinc finger 2##AF151894|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##AF349455|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##BC005024|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##AK026514|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##NM_016069|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)	0.99708	0.0	denovo_WM_7:-12:0.313	denovo_WM_7:-13:0.313	denovo_WM_7:-14:0.313
chr15	59397068	59397241	reg1000728.p2	12.466	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-38076	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-116875	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-117297	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	217	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	101898	+	AB290177 TSC_hg19_v1_chr15_-_59665055	267900	-	AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE	0.992337	0.0	denovo_WM_7:-5:0.788
chr2	177796611	177796760	reg1000716.p1	12.466	+	BC013438 TSC_hg19_v1_chr2_-_177502718	-293997	-	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-662446	+	AF241528 NM_024501 TSC_hg19_v1_chr2_+_177053395 AK314120 BC014477 BC028190 DQ892237 DQ895437 AB464583	-743269	+	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	280789	+	AK311688 NM_001145412 NM_001145413	331886	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	332691	-	BC013438|LOC375295|375295|uncharacterized LOC375295##NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AF241528|HOXD1|3231|homeobox D1##NM_024501|HOXD1|3231|homeobox D1##AK314120|HOXD1|3231|homeobox D1##BC014477|HOXD1|3231|homeobox D1##BC028190|HOXD1|3231|homeobox D1##DQ892237|HOXD1|3231|homeobox D1##DQ895437|HOXD1|3231|homeobox D1##NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	0.993226	0.0	denovo_WM_7:-23:0.784
chr6	7236905	7237085	reg1000926.p2	12.463	+	BX647723 TSC_hg19_v1_chr6_+_7108910	-128092	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	-128772	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	-128960	+	BT007387 CR456961 AB464204 DQ892751 EU176743 TSC_hg19_v1_chr6_-_7313433 Z12830 AK075562 AK222762 AK222809 AK291550 AK312653 CR936719 BC007710 NM_003144	76451	-	AF414185 NM_001170692 NM_001170693 NM_205864 TSC_hg19_v1_chr6_-_7389974	152972	-	TSC_hg19_v1_chr6_+_7390042 AY094356 AK314467 BC006104 NM_031480 AK054568	153103	+	BX647723|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##BT007387|SSR1|6745|signal sequence receptor, alpha##CR456961|SSR1|6745|signal sequence receptor, alpha##DQ892751|SSR1|6745|signal sequence receptor, alpha##EU176743|SSR1|6745|signal sequence receptor, alpha##Z12830|SSR1|6745|signal sequence receptor, alpha##AK075562|SSR1|6745|signal sequence receptor, alpha##AK222762|SSR1|6745|signal sequence receptor, alpha##AK222809|SSR1|6745|signal sequence receptor, alpha##AK291550|SSR1|6745|signal sequence receptor, alpha##AK312653|SSR1|6745|signal sequence receptor, alpha##CR936719|SSR1|6745|signal sequence receptor, alpha##BC007710|SSR1|6745|signal sequence receptor, alpha##NM_003144|SSR1|6745|signal sequence receptor, alpha##AF414185|CAGE1|285782|cancer antigen 1##NM_001170692|CAGE1|285782|cancer antigen 1##NM_001170693|CAGE1|285782|cancer antigen 1##NM_205864|CAGE1|285782|cancer antigen 1##AY094356|RIOK1|83732|RIO kinase 1 (yeast)##AK314467|RIOK1|83732|RIO kinase 1 (yeast)##BC006104|RIOK1|83732|RIO kinase 1 (yeast)##NM_031480|RIOK1|83732|RIO kinase 1 (yeast)##AK054568|RIOK1|83732|RIO kinase 1 (yeast)	0.994349	0.0	denovo_WM_7:-20:0.834
chr19	17294687	17294867	reg1000981.p2	12.462	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-108184	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-108456	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-157237	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	31395	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	31428	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	42257	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	1.490416	0.0	denovo_WM_7:30:0.652	denovo_WM_7:-89:0.313	denovo_WM_7:-90:0.474
chr10	22890010	22890190	reg1000636.p1	12.460	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-164101	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-255644	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-279935	+	AK294817 TSC_hg19_v1_chr10_-_23003038	112937	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	113390	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	326881	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	1.970603	0.0	denovo_WM_7:-14:0.387	denovo_WM_7:-15:0.290	denovo_WM_7:-31:0.295	denovo_WM_7:-32:0.392
chr19	42379519	42379677	reg1000983.p1	12.459	+	TSC_hg19_v1_chr19_+_42364325 AK311786 BC017386 D28389 M81757	-15268	+	TSC_hg19_v1_chr19_+_42364273 BC000023	-15322	+	BC018616 NM_001022	-15611	+	NM_001783 NM_021601 AK223371 M80462 M86921 AK315337 BC113731 BC113733 S46706 HQ258131 M74721 S75217 S79248 X83540	1683	+	BC064996 TSC_hg19_v1_chr19_+_42387266 NM_004706 NM_198977 BC011726	7679	+	TSC_hg19_v1_chr19_+_42387309 U64105	7720	+	AK311786|RPS19|6223|ribosomal protein S19##BC017386|RPS19|6223|ribosomal protein S19##M81757|RPS19|6223|ribosomal protein S19##BC000023|RPS19|6223|ribosomal protein S19##BC018616|RPS19|6223|ribosomal protein S19##NM_001022|RPS19|6223|ribosomal protein S19##NM_001783|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##NM_021601|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##AK223371|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##M80462|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##M86921|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##AK315337|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##BC113731|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##BC113733|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##S46706|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##HQ258131|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##M74721|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##S75217|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##S79248|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##X83540|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##BC064996|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_004706|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_198977|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC011726|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##U64105|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1	0.999494	0.0	
chr9	139962241	139962380	reg1000823.p1	12.457	+	AF144748 EF495152 CU690182 DQ892410 DQ895623 U91510 BC035738 NM_001246 NM_203468	-13835	-	TSC_hg19_v1_chr9_-_139940630 AF327349 AK074793 AF285836 NM_015392	-21671	-	TSC_hg19_v1_chr9_-_139940559 BC004217	-21748	-	TSC_hg19_v1_chr9_-_139965024 BC048267 NM_178448 DQ150361	2723	-	TSC_hg19_v1_chr9_+_139971968 NM_207309	9643	+	AL832421 TSC_hg19_v1_chr9_+_139972236 AK095393 BC106035	9930	+	AF144748|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##EF495152|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ892410|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ895623|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##U91510|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##BC035738|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_001246|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_203468|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##AF327349|NPDC1|56654|neural proliferation, differentiation and control, 1##AK074793|NPDC1|56654|neural proliferation, differentiation and control, 1##AF285836|NPDC1|56654|neural proliferation, differentiation and control, 1##NM_015392|NPDC1|56654|neural proliferation, differentiation and control, 1##BC004217|NPDC1|56654|neural proliferation, differentiation and control, 1##BC048267|C9orf140|89958|chromosome 9 open reading frame 140##NM_178448|C9orf140|89958|chromosome 9 open reading frame 140##DQ150361|C9orf140|89958|chromosome 9 open reading frame 140##NM_207309|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AL832421|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AK095393|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC106035|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	1.793226	0.151706	denovo_WM_7:-61:0.424	denovo_WM_7:-62:0.282	denovo_WM_7:-76:0.431	denovo_WM_7:-77:0.247	denovo_WM_7:-78:0.218
chr2	216134690	216134819	reg1001171.p1	12.450	+	BC144073 AY219711 NM_173076	-131645	-	AY033486 NM_015657	-237945	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	-460395	-	NM_004044 TSC_hg19_v1_chr2_+_216176781 AK313066 D82348 AK298142	41984	+	D89976 TSC_hg19_v1_chr2_+_216176813	42058	+	TSC_hg19_v1_chr2_+_216176824 AB062403 BC008879 AB590190 DQ893262 DQ896591 CU679167	42087	+	BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##NM_004044|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK313066|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D82348|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK298142|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D89976|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AB062403|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##BC008879|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ893262|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ896591|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	1.793394	0.982823	CTCF.p2:3:0.983	denovo_WM_7:-28:0.207	denovo_WM_7:-29:0.420	denovo_WM_7:103:0.912
chr3	39257736	39257879	reg1000893.p2	12.448	+	BC127119 BC139782 AY375160 NM_194293 TSC_hg19_v1_chr3_-_39234085 AJ626899 AJ626900 NM_001198621 AK096421 BX648565 CR749430	-23722	-	NM_033027 TSC_hg19_v1_chr3_-_39195146	-62683	-	TSC_hg19_v1_chr3_-_39195053 BC038949 AB053121 BC028213	-62756	-	U28934 BC028078 U20350 AK307911 AK312373 AK225764 BC017855 NM_001337	63695	-	NM_001171172	64122	-	NM_001171171	64956	-	BC127119|XIRP1|165904|xin actin-binding repeat containing 1##BC139782|XIRP1|165904|xin actin-binding repeat containing 1##AY375160|XIRP1|165904|xin actin-binding repeat containing 1##NM_194293|XIRP1|165904|xin actin-binding repeat containing 1##AJ626899|XIRP1|165904|xin actin-binding repeat containing 1##AJ626900|XIRP1|165904|xin actin-binding repeat containing 1##NM_001198621|XIRP1|165904|xin actin-binding repeat containing 1##AK096421|XIRP1|165904|xin actin-binding repeat containing 1##BX648565|XIRP1|165904|xin actin-binding repeat containing 1##CR749430|XIRP1|165904|xin actin-binding repeat containing 1##NM_033027|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##BC038949|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##AB053121|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##BC028213|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##U28934|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##BC028078|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##U20350|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##AK307911|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##AK312373|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##AK225764|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##BC017855|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##NM_001337|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##NM_001171172|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##NM_001171171|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1	0.999151	0.0	denovo_WM_7:-29:0.679
chr4	186017297	186017426	reg1001001.p1	12.445	+	BC140795 BC144567 BC144568 BC144569 NM_001029887	-77323	+	TSC_hg19_v1_chr4_-_185747201 AK303486 NM_001995	-270127	-	TSC_hg19_v1_chr4_-_185747123 L09229 AK292798	-270260	-	NM_001151 TSC_hg19_v1_chr4_+_186064419 J02966 AK291902 BC063643 BC008664 AB209764 BC061589 J03593 DQ891547 DQ894735 AB464231	47109	+	TSC_hg19_v1_chr4_-_186125137 AK091993 BC020772 BC030535 NM_020827	107783	-	NM_031953	113922	+	BC140795|HELT|391723|helt bHLH transcription factor##BC144567|HELT|391723|helt bHLH transcription factor##BC144569|HELT|391723|helt bHLH transcription factor##NM_001029887|HELT|391723|helt bHLH transcription factor##AK303486|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##NM_001995|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##L09229|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##AK292798|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##NM_001151|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J02966|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK291902|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC063643|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC008664|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB209764|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC061589|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J03593|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ891547|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ894735|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK091993|KIAA1430|57587|KIAA1430##BC020772|KIAA1430|57587|KIAA1430##BC030535|KIAA1430|57587|KIAA1430##NM_020827|KIAA1430|57587|KIAA1430##NM_031953|SNX25|83891|sorting nexin 25	0.995801	0.981354	CTCF.p2:24:0.981
chr1	206084120	206084282	reg1000905.p2	12.444	+	BC151208 BC136538 BC144233 AF331525 NM_052934 NM_134325	-171635	-	BC039170 BC063477 AK057131 AK290786 TSC_hg19_v1_chr1_-_205819261 NM_152491	-264942	-	TSC_hg19_v1_chr1_+_205782474 AK097788	-301700	+	TSC_hg19_v1_chr1_-_206137445 AK124556	53247	-	BC035696 NM_001123168 BC137545 BC137546	54715	+	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	140160	+	BC151208|SLC26A9|115019|solute carrier family 26, member 9##BC136538|SLC26A9|115019|solute carrier family 26, member 9##BC144233|SLC26A9|115019|solute carrier family 26, member 9##AF331525|SLC26A9|115019|solute carrier family 26, member 9##NM_052934|SLC26A9|115019|solute carrier family 26, member 9##NM_134325|SLC26A9|115019|solute carrier family 26, member 9##BC039170|PM20D1|148811|peptidase M20 domain containing 1##BC063477|PM20D1|148811|peptidase M20 domain containing 1##AK057131|PM20D1|148811|peptidase M20 domain containing 1##AK290786|PM20D1|148811|peptidase M20 domain containing 1##NM_152491|PM20D1|148811|peptidase M20 domain containing 1##AK124556|LOC100132966|100132966|uncharacterized LOC100132966##BC035696|FAM72A|729533|family with sequence similarity 72, member A##NM_001123168|FAM72A|729533|family with sequence similarity 72, member A##BC137545|FAM72A|729533|family with sequence similarity 72, member A##BC137546|FAM72B|653820|family with sequence similarity 72, member B##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B	0.990221	0.0	denovo_WM_7:-26:0.340	denovo_WM_7:-28:0.584
chr9	73027046	73027206	reg1000977.p1	12.439	+	TSC_hg19_v1_chr9_+_72873993 AB385355 AJ310550 DQ893364 DQ896768	-153137	+	BC038225 TSC_hg19_v1_chr9_+_72873908 BC017666 AB011166 AK055825	-153188	+	TSC_hg19_v1_chr9_+_72873893 AK304133 NM_015110	-153266	+	AB451404 CU686806 AB464604 EU446889 TSC_hg19_v1_chr9_-_73028875 BC074879 BC074880 AK313631 BC069431	1549	-	D31716 S72504 NM_001206	2429	-	BC067733 AF325212 AK021788 AK225732 BC094699 NM_001007470 NM_020952 NM_024971 NM_206944 NM_206945 NM_206946 NM_206947 NM_206948 BC142972	456834	-	AJ310550|SMC5|23137|structural maintenance of chromosomes 5##DQ893364|SMC5|23137|structural maintenance of chromosomes 5##DQ896768|SMC5|23137|structural maintenance of chromosomes 5##BC038225|SMC5|23137|structural maintenance of chromosomes 5##BC017666|SMC5|23137|structural maintenance of chromosomes 5##AB011166|SMC5|23137|structural maintenance of chromosomes 5##AK055825|SMC5|23137|structural maintenance of chromosomes 5##AK304133|SMC5|23137|structural maintenance of chromosomes 5##NM_015110|SMC5|23137|structural maintenance of chromosomes 5##AB451404|KLF9|687|Kruppel-like factor 9##EU446889|KLF9|687|Kruppel-like factor 9##BC074879|KLF9|687|Kruppel-like factor 9##BC074880|KLF9|687|Kruppel-like factor 9##AK313631|KLF9|687|Kruppel-like factor 9##BC069431|KLF9|687|Kruppel-like factor 9##D31716|KLF9|687|Kruppel-like factor 9##S72504|KLF9|687|Kruppel-like factor 9##NM_001206|KLF9|687|Kruppel-like factor 9##BC067733|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AF325212|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK021788|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK225732|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC094699|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007470|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_020952|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_024971|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206944|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206945|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206946|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206947|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206948|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC142972|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3	1.767221	0.0	denovo_WM_7:0:0.536	denovo_WM_7:-1:0.314	denovo_WM_7:-15:0.546	denovo_WM_7:-16:0.313
chr2	127413536	127413670	reg1000931.p1	12.434	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-2630739	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-4900366	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-4919138	-	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	104	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	189	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	451138	-	AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1	1.216226	0.0	denovo_WM_7:7:0.922
chr5	115174797	115174928	reg1000755.p1	12.434	+	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	-22499	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	-213068	-	TSC_hg19_v1_chr5_-_114961697 AK074962	-213170	-	BC011033 TSC_hg19_v1_chr5_-_115177263 AB017507 AB590693 EU554057 BC012266 AK313320 NM_004707	2542	-	TSC_hg19_v1_chr5_+_115177642 NM_001284 BX647735 U91932 BC000804 D63643 BC012614 X99458 DQ891198 DQ894381 AK311843 BT009833 CR450341	2813	+	AK291655 BC068560 NM_173800 BC060869 AY560010 BC109022 BC109023	123349	+	D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##BC011033|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AB017507|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##EU554057|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##BC012266|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AK313320|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_004707|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_001284|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BX647735|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##U91932|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC000804|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##D63643|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC012614|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##X99458|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ891198|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ894381|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK311843|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BT009833|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##CR450341|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK291655|AQPEP|206338|laeverin##BC068560|AQPEP|206338|laeverin##NM_173800|AQPEP|206338|laeverin##BC060869|AQPEP|206338|laeverin##AY560010|AQPEP|206338|laeverin##BC109022|AQPEP|206338|laeverin##BC109023|AQPEP|206338|laeverin	0.995035	0.022092	
chr15	63960978	63961106	reg1001055.p1	12.431	+	BC017581 BC036918 AK093077 TSC_hg19_v1_chr15_-_63893135	-68000	-	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	-71463	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	-164165	+	TSC_hg19_v1_chr15_-_64126081 U50078	165042	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	165078	-	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	165098	-	BC017581|LOC100130855|100130855|uncharacterized LOC100130855##BC036918|LOC100130855|100130855|uncharacterized LOC100130855##AK093077|LOC100130855|100130855|uncharacterized LOC100130855##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	0.0	0.0	
chr16	14215062	14215242	reg1000744.p1	12.423	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-50066	+	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	-201121	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-1219684	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	65366	+	BC047761 TSC_hg19_v1_chr16_+_14294209	79046	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	508876	-	AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK093577|MKL2|57496|MKL/myocardin-like 2##BC047761|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease	1.150874	0.0	denovo_WM_7:-84:0.981
chr14	35908145	35908273	reg1000933.p1	12.418	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	-34285	-	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	-146566	+	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	-146638	+	AF260323 NM_032594 BC130377 BC130379 TSC_hg19_v1_chr14_+_36003369 AB037912 AK096639	95100	+	AB511280 BC150596 TSC_hg19_v1_chr14_-_36278252	369938	-	TSC_hg19_v1_chr14_-_36278433 AY596970 AY596971 NM_014990 NM_194301	370186	-	BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AF260323|INSM2|84684|insulinoma-associated 2##NM_032594|INSM2|84684|insulinoma-associated 2##BC130377|INSM2|84684|insulinoma-associated 2##BC130379|INSM2|84684|insulinoma-associated 2##AB037912|INSM2|84684|insulinoma-associated 2##AK096639|INSM2|84684|insulinoma-associated 2##AB511280|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BC150596|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596970|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596971|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_014990|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_194301|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)	1.009636	0.0	
chr20	37487871	37488009	reg1000967.p2	12.415	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-53586	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-110828	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-134781	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	67049	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	67128	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	103049	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.084239	0.0	
chr1	10011095	10011246	reg1000986.p3	12.412	+	TSC_hg19_v1_chr1_+_10003532 AK315640	-7627	+	NM_022787 BC014943 TSC_hg19_v1_chr1_+_10003497 AK026065 AK222920	-7674	+	TSC_hg19_v1_chr1_-_10003358 AB060688 BC007240 AK304348 AK312550	-7797	-	BC063013 NM_052960 BC033883 AF399927 AK312027 AY145438 CU687628	46114	+	TSC_hg19_v1_chr1_+_10093015 AB028839 NM_001105562 NM_006048	81845	+	AB014584 TSC_hg19_v1_chr1_+_10093218	82043	+	AK315640|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##NM_022787|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##BC014943|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK026065|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK222920|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AB060688|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC007240|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK304348|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK312550|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC063013|RBP7|116362|retinol binding protein 7, cellular##NM_052960|RBP7|116362|retinol binding protein 7, cellular##BC033883|RBP7|116362|retinol binding protein 7, cellular##AF399927|RBP7|116362|retinol binding protein 7, cellular##AK312027|RBP7|116362|retinol binding protein 7, cellular##AY145438|RBP7|116362|retinol binding protein 7, cellular##AB028839|UBE4B|10277|ubiquitination factor E4B##NM_001105562|UBE4B|10277|ubiquitination factor E4B##NM_006048|UBE4B|10277|ubiquitination factor E4B##AB014584|UBE4B|10277|ubiquitination factor E4B	0.998539	0.0	denovo_WM_7:-14:0.449	denovo_WM_7:-15:0.449
chr16	2583263	2583443	reg1000653.p2	12.412	+	BC146925 BC146926 AY584596 NM_001048212	-1970	-	TSC_hg19_v1_chr16_+_2570406 NM_001145815 NM_015944 AF132948 AK296877 AK300747 BC018734 CU676298	-12963	+	TSC_hg19_v1_chr16_+_2564000 AB463422 BT007155 CR541930 CR541951	-19301	+	TSC_hg19_v1_chr16_+_2587985 NM_002613 NM_031268	4615	+	TSC_hg19_v1_chr16_+_2587992 AB209835	4640	+	TSC_hg19_v1_chr16_+_2588020 BC006339 BC012103	4657	+	BC146925|CEMP1|752014|cementum protein 1##BC146926|CEMP1|752014|cementum protein 1##AY584596|CEMP1|752014|cementum protein 1##NM_001048212|CEMP1|752014|cementum protein 1##NM_001145815|AMDHD2|51005|amidohydrolase domain containing 2##NM_015944|AMDHD2|51005|amidohydrolase domain containing 2##AF132948|AMDHD2|51005|amidohydrolase domain containing 2##AK296877|AMDHD2|51005|amidohydrolase domain containing 2##AK300747|AMDHD2|51005|amidohydrolase domain containing 2##BC018734|AMDHD2|51005|amidohydrolase domain containing 2##BT007155|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##CR541930|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##CR541951|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##NM_002613|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##NM_031268|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##AB209835|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC006339|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC012103|PDPK1|5170|3-phosphoinositide dependent protein kinase-1	2.995315	0.0	denovo_WM_7:86:0.469	denovo_WM_7:87:0.321	denovo_WM_7:102:0.299	denovo_WM_7:103:0.447
chr6	41407898	41408031	reg1000832.p1	12.412	+	NM_001199509 NM_001199510 NM_004828 AJ010099 AJ010100 BC166647	-104398	+	CU676054 DQ892009 DQ895198 AY074783 TSC_hg19_v1_chr6_-_41254418 AK223264 AK292162 AK301519 AK313104 BC017773 AF287008 NM_001242589 NM_001242590 NM_018643	-153540	-	AY358271 NM_198153 BC101780 BC105101 BC143652	-211896	+	TSC_hg19_v1_chr6_+_41514135 BC040962 NM_001012426 NM_001012427 NM_138457	106195	+	TSC_hg19_v1_chr6_+_41514342 BC052803	106373	+	TSC_hg19_v1_chr6_+_41606198 NM_005586 AK290735 BC007836 U78313	198258	+	NM_001199509|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_001199510|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_004828|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010099|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010100|NCR2|9436|natural cytotoxicity triggering receptor 2##BC166647|NCR2|9436|natural cytotoxicity triggering receptor 2##DQ892009|TREM1|54210|triggering receptor expressed on myeloid cells 1##DQ895198|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY074783|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK223264|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK292162|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK301519|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK313104|TREM1|54210|triggering receptor expressed on myeloid cells 1##BC017773|TREM1|54210|triggering receptor expressed on myeloid cells 1##AF287008|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242589|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242590|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_018643|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY358271|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##NM_198153|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC101780|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC105101|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC143652|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC040962|FOXP4|116113|forkhead box P4##NM_001012426|FOXP4|116113|forkhead box P4##NM_001012427|FOXP4|116113|forkhead box P4##NM_138457|FOXP4|116113|forkhead box P4##BC052803|FOXP4|116113|forkhead box P4##NM_005586|MDFI|4188|MyoD family inhibitor##AK290735|MDFI|4188|MyoD family inhibitor##BC007836|MDFI|4188|MyoD family inhibitor##U78313|MDFI|4188|MyoD family inhibitor	1.456295	0.0	denovo_WM_7:37:0.470	denovo_WM_7:38:0.470	denovo_WM_7:-103:0.273
chr18	32089992	32090146	reg1000946.p1	12.411	+	AJ009668 TSC_hg19_v1_chr18_+_32073374	-16706	+	TSC_hg19_v1_chr18_+_32073264 NM_001198945 NM_001392 NM_032975 NM_032979 AK294746 U26742	-16805	+	AB017800 NM_001198546 NM_001198548 NM_003787	-286555	-	NM_001128175 NM_001198938 NM_001198939 NM_001198940 AK308410 AL833285 BC005300 AB209102	83235	+	NM_001198941 NM_032978 TSC_hg19_v1_chr18_+_32290229 AK291156	200177	+	NM_001390 NM_001391 AB463020 BT006937 EU831587 EU831619 EU831672 EU831705	245870	+	AJ009668|DTNA|1837|dystrobrevin, alpha##NM_001198945|DTNA|1837|dystrobrevin, alpha##NM_001392|DTNA|1837|dystrobrevin, alpha##NM_032975|DTNA|1837|dystrobrevin, alpha##NM_032979|DTNA|1837|dystrobrevin, alpha##AK294746|DTNA|1837|dystrobrevin, alpha##U26742|DTNA|1837|dystrobrevin, alpha##AB017800|NOL4|8715|nucleolar protein 4##NM_001198546|NOL4|8715|nucleolar protein 4##NM_001198548|NOL4|8715|nucleolar protein 4##NM_003787|NOL4|8715|nucleolar protein 4##NM_001128175|DTNA|1837|dystrobrevin, alpha##NM_001198938|DTNA|1837|dystrobrevin, alpha##NM_001198939|DTNA|1837|dystrobrevin, alpha##NM_001198940|DTNA|1837|dystrobrevin, alpha##AK308410|DTNA|1837|dystrobrevin, alpha##AL833285|DTNA|1837|dystrobrevin, alpha##BC005300|DTNA|1837|dystrobrevin, alpha##AB209102|DTNA|1837|dystrobrevin, alpha##NM_001198941|DTNA|1837|dystrobrevin, alpha##NM_032978|DTNA|1837|dystrobrevin, alpha##AK291156|DTNA|1837|dystrobrevin, alpha##NM_001390|DTNA|1837|dystrobrevin, alpha##NM_001391|DTNA|1837|dystrobrevin, alpha##BT006937|DTNA|1837|dystrobrevin, alpha##EU831587|DTNA|1837|dystrobrevin, alpha##EU831619|DTNA|1837|dystrobrevin, alpha##EU831672|DTNA|1837|dystrobrevin, alpha##EU831705|DTNA|1837|dystrobrevin, alpha	0.981459	0.0	denovo_WM_7:12:0.566	denovo_WM_7:13:0.365
chr2	11969481	11969620	reg1000890.p1	12.410	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-82775	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-159259	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-286707	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	887703	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	888366	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	888847	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.99951	0.955889	CTCF.p2:-13:0.956	denovo_WM_7:32:0.425	denovo_WM_7:33:0.425
chr7	96339233	96339395	reg1000787.p1	12.410	+	TSC_hg19_v1_chr7_-_96339174 AK291070 NM_006304 U41515	-128	-	CR456887 TSC_hg19_v1_chr7_-_96339159 AK309241 BC032782	-196	-	BC140736 BC171740 AK124274 NM_001201450 NM_001201451	-206487	-	TSC_hg19_v1_chr7_-_96633611 AK091367 AX746939 BC101445 BC101446 BC101447 BC101985 BC113049	294297	-	NM_005222	295975	+	BC006226 TSC_hg19_v1_chr7_-_96654144 AK023493 NM_005221 AK297614	314880	-	AK291070|SHFM1|7979|split hand/foot malformation (ectrodactyly) type 1##NM_006304|SHFM1|7979|split hand/foot malformation (ectrodactyly) type 1##U41515|SHFM1|7979|split hand/foot malformation (ectrodactyly) type 1##CR456887|SHFM1|7979|split hand/foot malformation (ectrodactyly) type 1##AK309241|SHFM1|7979|split hand/foot malformation (ectrodactyly) type 1##BC032782|SHFM1|7979|split hand/foot malformation (ectrodactyly) type 1##BC140736|FLJ42280|401388|putative uncharacterized protein FLJ42280##BC171740|FLJ42280|401388|putative uncharacterized protein FLJ42280##AK124274|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201450|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201451|FLJ42280|401388|putative uncharacterized protein FLJ42280##AK091367|DLX6-AS1|285987|DLX6 antisense RNA 1 (non-protein coding)##BC101445|DLX6-AS1|285987|DLX6 antisense RNA 1 (non-protein coding)##BC101446|DLX6-AS1|285987|DLX6 antisense RNA 1 (non-protein coding)##BC101447|DLX6-AS1|285987|DLX6 antisense RNA 1 (non-protein coding)##BC101985|DLX6-AS1|285987|DLX6 antisense RNA 1 (non-protein coding)##BC113049|DLX6-AS1|285987|DLX6 antisense RNA 1 (non-protein coding)##NM_005222|DLX6|1750|distal-less homeobox 6##BC006226|DLX5|1749|distal-less homeobox 5##AK023493|DLX5|1749|distal-less homeobox 5##NM_005221|DLX5|1749|distal-less homeobox 5##AK297614|DLX5|1749|distal-less homeobox 5	1.453212	0.0	denovo_WM_7:97:0.457
chr5	130824333	130824454	reg1001103.p1	12.409	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-224593	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-224625	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-224637	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	146364	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	146426	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	146485	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.034446	0.0	
chr14	103279667	103279775	reg1000883.p1	12.406	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-35821	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-35902	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-220560	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	109277	+	TSC_hg19_v1_chr14_-_103430941 BX248752	151237	-	AB384568 TSC_hg19_v1_chr14_-_103523568	243820	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	1.896161	0.0	denovo_WM_7:59:0.521	denovo_WM_7:61:0.305
chr1	47901186	47901362	reg1000978.p1	12.402	+	AF275722 NM_012186	-19531	+	TSC_hg19_v1_chr1_+_47799646 AF259961	-101633	+	TSC_hg19_v1_chr1_+_47799615 BC017806 AF087865 AF112216 AF110643 AK223014 AK294294 AK298502 AF070416 AK025258 AK293238 AK312693 BC014961 AB528698 DQ892213 DQ895408 DQ895409	-101722	+	AF042832 NM_004474	414	+	NM_001194986	561287	-	BC104857 BC104863 BC143570 BC143587 NM_001011547 NM_001135181 BC143572 TSC_hg19_v1_chr1_+_48688387 BC048332 AK131200 BX648549 AK296133	787118	+	AF275722|FOXE3|2301|forkhead box E3##NM_012186|FOXE3|2301|forkhead box E3##AF259961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC017806|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF087865|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF112216|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF110643|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK223014|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK294294|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK298502|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF070416|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK025258|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK293238|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK312693|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC014961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ892213|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895408|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895409|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF042832|FOXD2|2306|forkhead box D2##NM_004474|FOXD2|2306|forkhead box D2##NM_001194986|LOC388630|388630|UPF0632 protein A##BC104857|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC104863|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143570|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143587|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001011547|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001135181|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143572|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC048332|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK131200|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BX648549|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK296133|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9	1.95258	0.0	denovo_WM_7:-18:0.521	denovo_WM_7:-21:0.218
chr5	151894531	151894668	reg1000668.p1	12.401	+	AF242874 AB041228 AF292402 CU677771 CU688334 DQ891777 DQ894961 AF272363 BC016938 BC067776 NM_020167	-109848	-	AK312702 AK308539 AK226046 BC114947 BC114967 NM_000171 NM_001146040 X52009	-590237	-	TSC_hg19_v1_chr5_+_151151662 X78262	-742935	+	NM_000827 NM_001114183 TSC_hg19_v1_chr5_+_152870105 AK289565 AK295827 AB209094 AK294011 M81886 X58633 BC111734 M64752 AB527859 AB590570	975666	+	TSC_hg19_v1_chr5_-_153418471 AF159700 BC011414 BC050701 AK024664 AK298943 AK095446 AK303865 AK313331 AK225821 NM_018691	1523858	-	AK296468 NM_001135037 NM_001242336 NM_005927 TSC_hg19_v1_chr5_+_153418526	1523925	+	AF242874|NMUR2|56923|neuromedin U receptor 2##AB041228|NMUR2|56923|neuromedin U receptor 2##AF292402|NMUR2|56923|neuromedin U receptor 2##DQ891777|NMUR2|56923|neuromedin U receptor 2##DQ894961|NMUR2|56923|neuromedin U receptor 2##AF272363|NMUR2|56923|neuromedin U receptor 2##BC016938|NMUR2|56923|neuromedin U receptor 2##BC067776|NMUR2|56923|neuromedin U receptor 2##NM_020167|NMUR2|56923|neuromedin U receptor 2##AK312702|GLRA1|2741|glycine receptor, alpha 1##AK308539|GLRA1|2741|glycine receptor, alpha 1##AK226046|GLRA1|2741|glycine receptor, alpha 1##BC114947|GLRA1|2741|glycine receptor, alpha 1##BC114967|GLRA1|2741|glycine receptor, alpha 1##NM_000171|GLRA1|2741|glycine receptor, alpha 1##NM_001146040|GLRA1|2741|glycine receptor, alpha 1##X52009|GLRA1|2741|glycine receptor, alpha 1##X78262|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_000827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##NM_001114183|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK289565|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK295827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AB209094|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK294011|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M81886|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##X58633|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##BC111734|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M64752|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AF159700|FAM114A2|10827|family with sequence similarity 114, member A2##BC011414|FAM114A2|10827|family with sequence similarity 114, member A2##BC050701|FAM114A2|10827|family with sequence similarity 114, member A2##AK024664|FAM114A2|10827|family with sequence similarity 114, member A2##AK298943|FAM114A2|10827|family with sequence similarity 114, member A2##AK095446|FAM114A2|10827|family with sequence similarity 114, member A2##AK303865|FAM114A2|10827|family with sequence similarity 114, member A2##AK313331|FAM114A2|10827|family with sequence similarity 114, member A2##AK225821|FAM114A2|10827|family with sequence similarity 114, member A2##NM_018691|FAM114A2|10827|family with sequence similarity 114, member A2##AK296468|MFAP3|4238|microfibrillar-associated protein 3##NM_001135037|MFAP3|4238|microfibrillar-associated protein 3##NM_001242336|MFAP3|4238|microfibrillar-associated protein 3##NM_005927|MFAP3|4238|microfibrillar-associated protein 3	0.999756	0.900777	denovo_WM_7:10:0.298	denovo_WM_7:11:0.298	denovo_WM_7:12:0.298	CTCF.p2:-22:0.901
chr14	81940531	81940683	reg1001204.p1	12.399	+	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-75781	-	D14886 NM_201595	-253033	-	D14887 TSC_hg19_v1_chr14_-_81687285 NM_015859 BC050703	-253327	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	59541	-	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	59620	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	4055866	+	HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##D14886|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_201595|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##D14887|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_015859|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##BC050703|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.999649	0.0	denovo_WM_7:-10:0.906
chr4	77352046	77352176	reg1001294.p1	12.399	+	BC035224 NM_001042784	-23654	-	TSC_hg19_v1_chr4_+_77227894 DQ891974 DQ895165 CU692542	-124210	+	TSC_hg19_v1_chr4_+_77227851 AF062534 AK074635 BC022301	-124281	+	AB055660 NM_020859	4141	+	AK027744 TSC_hg19_v1_chr4_+_77610613	258500	+	TSC_hg19_v1_chr4_+_77610738 AK304103	258640	+	BC035224|CCDC158|339965|coiled-coil domain containing 158##NM_001042784|CCDC158|339965|coiled-coil domain containing 158##DQ891974|STBD1|8987|starch binding domain 1##DQ895165|STBD1|8987|starch binding domain 1##AF062534|STBD1|8987|starch binding domain 1##AK074635|STBD1|8987|starch binding domain 1##BC022301|STBD1|8987|starch binding domain 1##AB055660|SHROOM3|57619|shroom family member 3##NM_020859|SHROOM3|57619|shroom family member 3##AK027744|SHROOM3|57619|shroom family member 3##AK304103|SHROOM3|57619|shroom family member 3	0.998755	0.797046	CTCF.p2:10:0.797	denovo_WM_7:-55:0.801
chr6	8183510	8183667	reg1000764.p1	12.396	+	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-80798	-	TSC_hg19_v1_chr6_-_8064644 AK301142 AF426434 NM_001199322 NM_001199323 NM_201280	-118928	-	TSC_hg19_v1_chr6_-_8064623 BC052310 AK025442 BC032438 CR749569 BX647336 BC119645 BC119644	-118987	-	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	252120	-	TSC_hg19_v1_chr6_+_8435870 BC040612	252300	+	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	2229028	-	AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AK301142|MUTED|63915|muted homolog (mouse)##AF426434|MUTED|63915|muted homolog (mouse)##NM_001199322|MUTED|63915|muted homolog (mouse)##NM_001199323|MUTED|63915|muted homolog (mouse)##NM_201280|MUTED|63915|muted homolog (mouse)##BC052310|MUTED-TXNDC5|100526836|MUTED-TXNDC5 readthrough (non-protein coding)##AK025442|MUTED|63915|muted homolog (mouse)##BC032438|MUTED|63915|muted homolog (mouse)##CR749569|MUTED|63915|muted homolog (mouse)##BX647336|MUTED|63915|muted homolog (mouse)##BC119645|MUTED|63915|muted homolog (mouse)##BC119644|MUTED|63915|muted homolog (mouse)##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.981406	0.0	denovo_WM_7:0:0.529	denovo_WM_7:2:0.276
chr6	137421014	137421153	reg1000927.p1	12.394	+	AF184971 AK315293 BC113574 BC113602 NM_014432 AK307072	-54838	-	TSC_hg19_v1_chr6_-_137365811 AY358883 HQ258452	-55245	-	AK316095 BC087842 NM_001008783 AK295424	-177630	+	AY044429 AY358737 AY040566 AY040567 AY040568 AY358111 AJ313161 AJ313162 NM_052962 NM_181309 NM_181310	73668	-	TSC_hg19_v1_chr6_-_137540496 BT006814 AB527981 CU675119 AF056979 AK294252	119385	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	119429	-	AF184971|IL20RA|53832|interleukin 20 receptor, alpha##AK315293|IL20RA|53832|interleukin 20 receptor, alpha##BC113574|IL20RA|53832|interleukin 20 receptor, alpha##BC113602|IL20RA|53832|interleukin 20 receptor, alpha##NM_014432|IL20RA|53832|interleukin 20 receptor, alpha##AK307072|IL20RA|53832|interleukin 20 receptor, alpha##AY358883|IL20RA|53832|interleukin 20 receptor, alpha##HQ258452|IL20RA|53832|interleukin 20 receptor, alpha##AK316095|SLC35D3|340146|solute carrier family 35, member D3##BC087842|SLC35D3|340146|solute carrier family 35, member D3##NM_001008783|SLC35D3|340146|solute carrier family 35, member D3##AK295424|SLC35D3|340146|solute carrier family 35, member D3##AY044429|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358737|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040566|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040567|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040568|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358111|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313161|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313162|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_052962|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181309|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181310|IL22RA2|116379|interleukin 22 receptor, alpha 2##BT006814|IFNGR1|3459|interferon gamma receptor 1##AF056979|IFNGR1|3459|interferon gamma receptor 1##AK294252|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1	0.986535	0.0	denovo_WM_7:-2:0.393	denovo_WM_7:-3:0.472
chr6	159548222	159548343	reg1000729.p1	12.392	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-82181	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-127061	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-127463	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	42148	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	565968	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	566080	-	BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial	0.996816	0.0	denovo_WM_7:62:0.718
chr9	95087628	95087743	reg1000295.p1	12.392	+	CR627363 TSC_hg19_v1_chr9_-_95087631 BC008491 AK001049 AK307408 BC146810 AK297355	-60	-	TSC_hg19_v1_chr9_-_95055999 NM_002161	-31672	-	TSC_hg19_v1_chr9_-_95055986 AK301272	-31699	-	NM_001012267	55	+	AB105104 NM_017948	171	-	TSC_hg19_v1_chr9_+_95087934 AK092603 AX747625	262	+	CR627363|NOL8|55035|nucleolar protein 8##BC008491|NOL8|55035|nucleolar protein 8##AK001049|NOL8|55035|nucleolar protein 8##AK307408|NOL8|55035|nucleolar protein 8##BC146810|NOL8|55035|nucleolar protein 8##AK297355|NOL8|55035|nucleolar protein 8##NM_002161|IARS|3376|isoleucyl-tRNA synthetase##AK301272|IARS|3376|isoleucyl-tRNA synthetase##NM_001012267|CENPP|401541|centromere protein P##AB105104|NOL8|55035|nucleolar protein 8##NM_017948|NOL8|55035|nucleolar protein 8##AK092603|CENPP|401541|centromere protein P	0.0	0.0	
chr8	103823231	103823362	reg1000783.p1	12.391	+	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	-155364	-	BC011538 NM_001032282 S81439	-157204	-	NM_024410 AK315276 BC104456 BC104457	-259435	+	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	53063	-	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	53099	-	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	209971	+	AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	0.998214	0.071256	denovo_WM_7:32:0.767
chr1	22108776	22108938	reg1001004.p2	12.387	+	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	-113024	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	-130510	-	AB003930 TSC_hg19_v1_chr1_-_21949064	-159820	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	668	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	777	-	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	842	-	AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48	0.0	0.0	
chr22	29145084	29145230	reg1000939.p1	12.375	+	TSC_hg19_v1_chr22_-_29138399 AF217975	-6754	-	BC000004 TSC_hg19_v1_chr22_+_29138056 NM_172002 BC065569 CR456462 AY191719 AB528150 CU013013 CU013301	-7096	+	BC004207 AK289360 CR456418 NM_001005735 NM_007194 NM_145862 AK290754 AB164374	-7340	-	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	23487	+	TSC_hg19_v1_chr22_+_29168718 BC065549 BC053874 BC040488 AK302925	23542	+	TSC_hg19_v1_chr22_+_29168732 AK091133 AX746797 AK295140 CR456461 AB528096 CU013012 CU013300 CU691050	23622	+	AF217975|CHEK2|11200|checkpoint kinase 2##NM_172002|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC065569|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##CR456462|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##AY191719|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC004207|CHEK2|11200|checkpoint kinase 2##AK289360|CHEK2|11200|checkpoint kinase 2##CR456418|CHEK2|11200|checkpoint kinase 2##NM_001005735|CHEK2|11200|checkpoint kinase 2##NM_007194|CHEK2|11200|checkpoint kinase 2##NM_145862|CHEK2|11200|checkpoint kinase 2##AK290754|CHEK2|11200|checkpoint kinase 2##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117##BC065549|CCDC117|150275|coiled-coil domain containing 117##BC053874|CCDC117|150275|coiled-coil domain containing 117##BC040488|CCDC117|150275|coiled-coil domain containing 117##AK302925|CCDC117|150275|coiled-coil domain containing 117##AK091133|CCDC117|150275|coiled-coil domain containing 117##AK295140|CCDC117|150275|coiled-coil domain containing 117##CR456461|CCDC117|150275|coiled-coil domain containing 117	0.997742	0.0	denovo_WM_7:-17:0.406	denovo_WM_7:-19:0.405
chr19	50867856	50867986	reg1001042.p2	12.370	+	BC085008 BC006149 BC111705 BC040958 BC053864 BC065203 BC032360 AF090387 AF098485 AF200344 AK300884 BC019048 AK310134 TSC_hg19_v1_chr19_-_50848025	-19929	-	AF055989 NM_004977	-35288	-	BC007877 TSC_hg19_v1_chr19_+_50796867	-71077	+	AF090386 DQ891993 DQ895183 CU676086 AF200345 BC029397 AK308013 AK314364 BC017842 AF098484 NM_004851	982	-	TSC_hg19_v1_chr19_+_50879744 NM_007121 AK297978 BC047750 CR749648 U07132 BC074500 AK290855 BC033500	11806	+	AB209560 TSC_hg19_v1_chr19_+_50887563	19604	+	BC085008|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC006149|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC111705|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC040958|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC053864|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC065203|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC032360|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF090387|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF098485|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF200344|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK300884|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC019048|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK310134|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF055989|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_004977|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##BC007877|MYH14|79784|myosin, heavy chain 14, non-muscle##AF090386|NAPSA|9476|napsin A aspartic peptidase##DQ891993|NAPSA|9476|napsin A aspartic peptidase##DQ895183|NAPSA|9476|napsin A aspartic peptidase##AF200345|NAPSA|9476|napsin A aspartic peptidase##BC029397|NAPSA|9476|napsin A aspartic peptidase##AK308013|NAPSA|9476|napsin A aspartic peptidase##AK314364|NAPSA|9476|napsin A aspartic peptidase##BC017842|NAPSA|9476|napsin A aspartic peptidase##AF098484|NAPSA|9476|napsin A aspartic peptidase##NM_004851|NAPSA|9476|napsin A aspartic peptidase##NM_007121|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK297978|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC047750|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##CR749648|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##U07132|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC074500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK290855|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC033500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AB209560|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa	0.999494	0.0	
chr10	109673329	109673478	reg1001139.p1	12.369	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-749027	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1214344	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3272358	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	2009806	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	2009874	-	NM_019903 AB209810 BC057285	2092378	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	0.990318	0.0	
chr11	117056564	117056695	reg1000886.p2	12.367	+	TSC_hg19_v1_chr11_+_117049977 AK303023	-6650	+	TSC_hg19_v1_chr11_+_117049872 AF151799 BC114522 BC114959 AY358442 NM_001040455 AK292974	-6737	+	TSC_hg19_v1_chr11_+_117049458 AK292501	-7072	+	NM_001001522 NM_003186 AK223002 M95787 TSC_hg19_v1_chr11_+_117070088 AK314043 BC010946 BC093050 BC004927 D17409	13450	+	BX640723 TSC_hg19_v1_chr11_+_117075706	19065	+	TSC_hg19_v1_chr11_-_117100552 BT006870 DQ890632 DQ893803	43926	-	AK303023|SIDT2|51092|SID1 transmembrane family, member 2##AF151799|SIDT2|51092|SID1 transmembrane family, member 2##BC114522|SIDT2|51092|SID1 transmembrane family, member 2##BC114959|SIDT2|51092|SID1 transmembrane family, member 2##AY358442|SIDT2|51092|SID1 transmembrane family, member 2##NM_001040455|SIDT2|51092|SID1 transmembrane family, member 2##AK292974|SIDT2|51092|SID1 transmembrane family, member 2##AK292501|SIDT2|51092|SID1 transmembrane family, member 2##NM_001001522|TAGLN|6876|transgelin##NM_003186|TAGLN|6876|transgelin##AK223002|TAGLN|6876|transgelin##M95787|TAGLN|6876|transgelin##AK314043|TAGLN|6876|transgelin##BC010946|TAGLN|6876|transgelin##BC093050|TAGLN|6876|transgelin##BC004927|TAGLN|6876|transgelin##D17409|TAGLN|6876|transgelin##BX640723|TAGLN|6876|transgelin##BT006870|PCSK7|9159|proprotein convertase subtilisin/kexin type 7##DQ890632|PCSK7|9159|proprotein convertase subtilisin/kexin type 7##DQ893803|PCSK7|9159|proprotein convertase subtilisin/kexin type 7	0.999263	0.0	
chr1	31216570	31216722	reg1000913.p1	12.366	+	TSC_hg19_v1_chr1_-_31196436 AK312949 NM_002379 AK075519	-20214	-	TSC_hg19_v1_chr1_+_31191648 AK057725	-25015	+	TSC_hg19_v1_chr1_+_29563016 NM_001195001 NM_005704 NM_133177 NM_133178 X97198 U73727 BC146655 X95712 U71075	-1653598	+	AB383742 TSC_hg19_v1_chr1_-_31230622 D42042 U30498 AK297014 AK307303 AK292009 BC106896 BC106897 U51240	13986	-	TSC_hg19_v1_chr1_-_31230697 NM_006762	14044	-	TSC_hg19_v1_chr1_-_31345363 AL049426	128752	-	AK312949|MATN1|4146|matrilin 1, cartilage matrix protein##NM_002379|MATN1|4146|matrilin 1, cartilage matrix protein##AK075519|MATN1|4146|matrilin 1, cartilage matrix protein##AK057725|LOC100129196|100129196|uncharacterized LOC100129196##NM_001195001|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_005704|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133177|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133178|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X97198|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U73727|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##BC146655|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X95712|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U71075|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##D42042|LAPTM5|7805|lysosomal protein transmembrane 5##U30498|LAPTM5|7805|lysosomal protein transmembrane 5##AK297014|LAPTM5|7805|lysosomal protein transmembrane 5##AK292009|LAPTM5|7805|lysosomal protein transmembrane 5##BC106896|LAPTM5|7805|lysosomal protein transmembrane 5##BC106897|LAPTM5|7805|lysosomal protein transmembrane 5##U51240|LAPTM5|7805|lysosomal protein transmembrane 5##NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##AL049426|SDC3|9672|syndecan 3	0.998478	0.0	
chr16	9992588	9992749	reg1001262.p1	12.356	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-807065	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-807128	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-935373	-	BC143273 U09002 NM_001134408	283165	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	283520	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	284009	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	1.050262	0.0	denovo_WM_7:-4:0.358	denovo_WM_7:-7:0.227
chr17	36642370	36642529	reg1001215.p1	12.356	+	TSC_hg19_v1_chr17_+_36584709 NM_001199417	-57744	+	TSC_hg19_v1_chr17_+_36507726 BC121030 BC121031 BC128607 NM_014598	-134586	+	AY584611 NM_001004334	-142757	-	TSC_hg19_v1_chr17_-_36729122 AK295027	86673	-	BC029278 TSC_hg19_v1_chr17_-_36760969	118489	-	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	119747	-	NM_001199417|ARHGAP23|57636|Rho GTPase activating protein 23##BC121030|SOCS7|30837|suppressor of cytokine signaling 7##BC121031|SOCS7|30837|suppressor of cytokine signaling 7##BC128607|SOCS7|30837|suppressor of cytokine signaling 7##NM_014598|SOCS7|30837|suppressor of cytokine signaling 7##AY584611|GPR179|440435|G protein-coupled receptor 179##NM_001004334|GPR179|440435|G protein-coupled receptor 179##AK295027|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1	0.997359	0.0	denovo_WM_7:32:0.816
chr9	69259733	69259861	reg1001251.p1	12.356	+	NM_001085476	-57594	-	TSC_hg19_v1_chr9_+_69065493 AK311167	-194259	+	TSC_hg19_v1_chr9_+_68726468 AK311167	-533295	+	AF265442 BC069006 AK293173 NM_001085457	2757	-	AL136793 NM_001098805	122183	+	NM_001126334	919017	-	NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5	0.82941	0.217527	CTCF.p2:-18:0.218	denovo_WM_7:66:0.829
chr3	10024762	10024884	reg1000805.p2	12.353	+	BC089447 AK296317 TSC_hg19_v1_chr3_-_9994093 AY358158 AK090993 AX746722 BC040508 NM_207351	-30745	-	TSC_hg19_v1_chr3_+_9975538 AL050275 NM_015513 NM_001031717 NM_001077415 BC008720 AY358363 AK314113	-49277	+	NM_001203263 NM_001203264 NM_001203265 NM_032732 NM_153460 AK092907 AK290670 AK294616 AK295377 AK315024 AX747801 AY359098 NM_153461 AK075534 AK096824 AK308241 AF458065 BC006411 AK225650 AY358840 AK315053 AK303171 EF676032	-66022	+	CU692722 TSC_hg19_v1_chr3_-_10028505 BC022807	3602	-	BC010883 TSC_hg19_v1_chr3_-_10028526 AK312008 AK172843 AF157321 AK222953 NM_018447	3703	-	TSC_hg19_v1_chr3_+_10028599 AK092352 AX747493	3767	+	BC089447|PRRT3|285368|proline-rich transmembrane protein 3##AY358158|PRRT3|285368|proline-rich transmembrane protein 3##AK090993|PRRT3|285368|proline-rich transmembrane protein 3##BC040508|PRRT3|285368|proline-rich transmembrane protein 3##NM_207351|PRRT3|285368|proline-rich transmembrane protein 3##AL050275|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_015513|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001031717|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001077415|CRELD1|78987|cysteine-rich with EGF-like domains 1##BC008720|CRELD1|78987|cysteine-rich with EGF-like domains 1##AY358363|CRELD1|78987|cysteine-rich with EGF-like domains 1##AK314113|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001203263|IL17RC|84818|interleukin 17 receptor C##NM_001203264|IL17RC|84818|interleukin 17 receptor C##NM_001203265|IL17RC|84818|interleukin 17 receptor C##NM_032732|IL17RC|84818|interleukin 17 receptor C##NM_153460|IL17RC|84818|interleukin 17 receptor C##AK092907|IL17RC|84818|interleukin 17 receptor C##AK290670|IL17RC|84818|interleukin 17 receptor C##AK294616|IL17RC|84818|interleukin 17 receptor C##AK295377|IL17RC|84818|interleukin 17 receptor C##AK315024|IL17RC|84818|interleukin 17 receptor C##AY359098|IL17RC|84818|interleukin 17 receptor C##NM_153461|IL17RC|84818|interleukin 17 receptor C##AK075534|IL17RC|84818|interleukin 17 receptor C##AK096824|IL17RC|84818|interleukin 17 receptor C##AK308241|IL17RC|84818|interleukin 17 receptor C##AF458065|IL17RC|84818|interleukin 17 receptor C##BC006411|IL17RC|84818|interleukin 17 receptor C##AK225650|IL17RC|84818|interleukin 17 receptor C##AY358840|IL17RC|84818|interleukin 17 receptor C##AK315053|IL17RC|84818|interleukin 17 receptor C##AK303171|IL17RC|84818|interleukin 17 receptor C##EF676032|IL17RC|84818|interleukin 17 receptor C##BC022807|TMEM111|55831|transmembrane protein 111##BC010883|TMEM111|55831|transmembrane protein 111##AK312008|TMEM111|55831|transmembrane protein 111##AK172843|TMEM111|55831|transmembrane protein 111##AF157321|TMEM111|55831|transmembrane protein 111##AK222953|TMEM111|55831|transmembrane protein 111##NM_018447|TMEM111|55831|transmembrane protein 111##AK092352|LOC442075|442075|uncharacterized LOC442075	0.998572	0.190066	denovo_WM_7:18:0.494	denovo_WM_7:19:0.494
chr1	143967338	143967503	reg1000948.p1	12.345	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-54290	-	HQ258079 BC130376 BC130378 NM_001123068	-199556	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-223015	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	396804	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	553511	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	553586	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	0.990221	0.0	denovo_WM_7:17:0.340	denovo_WM_7:19:0.584
chr6	27144992	27145172	reg1000615.p2	12.340	+	BC093849 BC093851 TSC_hg19_v1_chr6_+_27114884 AK312232 AB528147 BC134366 BC148293 NM_080596	-30199	+	AB590085 EU446970 TSC_hg19_v1_chr6_-_27114635 AJ223352 BC051872 BC064959 BC108737 BC000893 AK292062 NM_080593	-30475	-	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	-38009	+	AK097918 AK314037 NM_005865 AF052514 AK303106 AB590521	70414	+	NM_033482	134928	-	AF352327 AF336874 BC107050 NM_032030	147476	+	BC093849|HIST1H2AH|85235|histone cluster 1, H2ah##BC093851|HIST1H2AH|85235|histone cluster 1, H2ah##AK312232|HIST1H2AH|85235|histone cluster 1, H2ah##BC134366|HIST1H2AH|85235|histone cluster 1, H2ah##BC148293|HIST1H2AH|85235|histone cluster 1, H2ah##NM_080596|HIST1H2AH|85235|histone cluster 1, H2ah##EU446970|HIST1H2BK|85236|histone cluster 1, H2bk##AJ223352|HIST1H2BK|85236|histone cluster 1, H2bk##BC051872|HIST1H2BK|85236|histone cluster 1, H2bk##BC064959|HIST1H2BK|85236|histone cluster 1, H2bk##BC108737|HIST1H2BK|85236|histone cluster 1, H2bk##BC000893|HIST1H2BK|85236|histone cluster 1, H2bk##AK292062|HIST1H2BK|85236|histone cluster 1, H2bk##NM_080593|HIST1H2BK|85236|histone cluster 1, H2bk##BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i##AK097918|PRSS16|10279|protease, serine, 16 (thymus)##AK314037|PRSS16|10279|protease, serine, 16 (thymus)##NM_005865|PRSS16|10279|protease, serine, 16 (thymus)##AF052514|PRSS16|10279|protease, serine, 16 (thymus)##AK303106|PRSS16|10279|protease, serine, 16 (thymus)##NM_033482|POM121L2|94026|POM121 membrane glycoprotein-like 2##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83	1.10116	0.0	denovo_WM_7:55:0.813
chr10	13967471	13967594	reg1000793.p1	12.339	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-217843	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-338545	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-338589	+	TSC_hg19_v1_chr10_-_14050453 AK001072	82960	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	405318	-	TSC_hg19_v1_chr10_-_14646259 BC064407	678785	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	1.990389	0.0	denovo_WM_7:41:0.269	denovo_WM_7:42:0.224	denovo_WM_7:60:0.232	denovo_WM_7:61:0.277
chr14	98087041	98087177	reg1000667.p2	12.334	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-823394	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-1118325	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-1118363	+	AK098639 NM_182560	1090840	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1650508	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1650781	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	1.996055	0.0	
chr5	123985407	123985568	reg1001096.p1	12.333	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1137605	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1226343	-	NM_001136239 AK297992 AF272898 AF272899	-1560643	+	BC131507 AB033107 BC151226 NM_020747	95301	-	NM_001146319 AK316288 AK300154	1710327	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1773356	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.903052	0.015568	denovo_WM_7:-15:0.685
chr11	75040085	75040225	reg1000650.p2	12.321	+	NM_001195528	-88206	+	FM209054 FM209053 AF205073 NM_001145211 AK294503	-169314	+	NM_001145212 NM_007256 FM209050 TSC_hg19_v1_chr11_+_74862151 AK304783 AK302492 AK290234 AK300134 AB020687 BC127254 BC041095 AB026256 AL117465	-178011	+	AF084040 AF084940 FJ348262 CU678548 AB462955 TSC_hg19_v1_chr11_-_75062708 AK289718 BC003636 NM_004041 NM_020251	22661	-	TSC_hg19_v1_chr11_+_75110562 D28344 AK130960 BC034149 NM_001005 AK129794 AK313051 BC013231 BC100284 X55715 BC071917 AK223048 BC003137 BC071669 S42658 AB464166 CU678394 DQ892888 DQ896136 U14990 U14991 U14992 BC003577 BC013196 AB062288	70420	+	HQ258227 BC132708 BC132710 TSC_hg19_v1_chr11_-_75141083 AK091109 AX746783	100905	-	NM_001195528|LOC100507050|100507050|uncharacterized LOC100507050##FM209053|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF205073|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145211|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK294503|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145212|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_007256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209050|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK304783|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK302492|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK290234|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK300134|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB020687|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC127254|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC041095|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB026256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AL117465|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF084040|ARRB1|408|arrestin, beta 1##AF084940|ARRB1|408|arrestin, beta 1##FJ348262|ARRB1|408|arrestin, beta 1##AK289718|ARRB1|408|arrestin, beta 1##BC003636|ARRB1|408|arrestin, beta 1##NM_004041|ARRB1|408|arrestin, beta 1##NM_020251|ARRB1|408|arrestin, beta 1##D28344|RPS3|6188|ribosomal protein S3##AK130960|RPS3|6188|ribosomal protein S3##BC034149|RPS3|6188|ribosomal protein S3##NM_001005|RPS3|6188|ribosomal protein S3##AK129794|RPS3|6188|ribosomal protein S3##AK313051|RPS3|6188|ribosomal protein S3##BC013231|RPS3|6188|ribosomal protein S3##BC100284|RPS3|6188|ribosomal protein S3##X55715|RPS3|6188|ribosomal protein S3##BC071917|RPS3|6188|ribosomal protein S3##AK223048|RPS3|6188|ribosomal protein S3##BC003137|RPS3|6188|ribosomal protein S3##BC071669|RPS3|6188|ribosomal protein S3##S42658|RPS3|6188|ribosomal protein S3##DQ892888|RPS3|6188|ribosomal protein S3##DQ896136|RPS3|6188|ribosomal protein S3##U14990|RPS3|6188|ribosomal protein S3##U14991|RPS3|6188|ribosomal protein S3##U14992|RPS3|6188|ribosomal protein S3##BC003577|RPS3|6188|ribosomal protein S3##BC013196|RPS3|6188|ribosomal protein S3##AB062288|RPS3|6188|ribosomal protein S3##HQ258227|KLHL35|283212|kelch-like 35 (Drosophila)##BC132708|KLHL35|283212|kelch-like 35 (Drosophila)##BC132710|KLHL35|283212|kelch-like 35 (Drosophila)##AK091109|KLHL35|283212|kelch-like 35 (Drosophila)	0.999607	0.0	
chr2	65455493	65455639	reg1000727.p2	12.320	+	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-631	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-830	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-98225	-	TSC_hg19_v1_chr2_-_65593766 AK299079	138207	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	138332	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	203646	-	NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2	0.998688	0.0	
chr3	31959758	31959890	reg1000872.p1	12.318	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	-385342	+	TSC_hg19_v1_chr3_+_31574468 AK074587	-385375	+	TSC_hg19_v1_chr3_+_31574119 AK311488	-385694	+	TSC_hg19_v1_chr3_-_32022751 BC003168 AF346291 AK304067 AK097503	62945	-	AK294003 NM_001137674	63441	+	AF392451 NM_001174060 NM_017784	63465	-	AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##BC003168|OSBPL10|114884|oxysterol binding protein-like 10##AF346291|OSBPL10|114884|oxysterol binding protein-like 10##AK304067|OSBPL10|114884|oxysterol binding protein-like 10##AK294003|ZNF860|344787|zinc finger protein 860##NM_001137674|ZNF860|344787|zinc finger protein 860##AF392451|OSBPL10|114884|oxysterol binding protein-like 10##NM_001174060|OSBPL10|114884|oxysterol binding protein-like 10##NM_017784|OSBPL10|114884|oxysterol binding protein-like 10	1.093468	0.0	denovo_WM_7:4:0.387	denovo_WM_7:5:0.422
chr21	26412162	26412300	reg1001130.p1	12.317	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-611163	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4041458	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4041541	+	TSC_hg19_v1_chr21_+_26934442 AF402776	522241	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	567584	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	599422	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.0	0.604668	CTCF.p2:29:0.605
chr2	219246239	219246401	reg1001138.p1	12.314	+	BC052750 NM_198559 CU690932	-24729	+	TSC_hg19_v1_chr2_+_219188021 AY358753 CU678300 AM393075 AM393168 BC002937 AK309308	-58283	+	TSC_hg19_v1_chr2_+_219187970 NM_022572	-58405	+	AK307954 NM_000578 TSC_hg19_v1_chr2_+_219246995 D50402 AB209650 AK303398 AK310914 AK298667 AK311405 D50403 AK294707 BC041787 L32185 BC071165 BC033754	589	+	NM_001206878	16740	+	AF229162 NM_021198 NM_182642 TSC_hg19_v1_chr2_+_219264577	18220	+	BC052750|C2orf62|375307|chromosome 2 open reading frame 62##NM_198559|C2orf62|375307|chromosome 2 open reading frame 62##AY358753|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393075|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393168|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC002937|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK309308|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_022572|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK307954|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_000578|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50402|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AB209650|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK303398|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK310914|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK298667|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK311405|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50403|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK294707|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC041787|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##L32185|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC071165|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC033754|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_001206878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AF229162|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_021198|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_182642|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	2.695376	0.0	denovo_WM_7:6:0.588	denovo_WM_7:26:0.253	denovo_WM_7:27:0.265	denovo_WM_7:-97:0.456	denovo_WM_7:-98:0.456
chr10	70784049	70784228	reg1000889.p1	12.304	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-35603	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-68206	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-123021	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	63698	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	63746	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	99753	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	2.75936	0.0	denovo_WM_7:-7:0.264	denovo_WM_7:-17:0.414	denovo_WM_7:39:0.295	denovo_WM_7:42:0.553	denovo_WM_7:-74:0.819
chr22	44439967	44440111	reg1000984.p2	12.304	+	AK308443 NM_001243386	-17856	+	TSC_hg19_v1_chr22_+_44420185 NM_013327 BC017461 AK309987 AK313957 BC046103 AB048276 AF151814 AF237769 AL159142	-19840	+	AF303887 NM_001003828	-44949	+	BC039811 NM_001243385	24957	+	NM_001137605 AK309348 AK293360	128817	+	NM_022141 AK225929 AK307294 BC034406 AF237772	136773	+	AK308443|PARVB|29780|parvin, beta##NM_001243386|PARVB|29780|parvin, beta##NM_013327|PARVB|29780|parvin, beta##BC017461|PARVB|29780|parvin, beta##AK309987|PARVB|29780|parvin, beta##AK313957|PARVB|29780|parvin, beta##BC046103|PARVB|29780|parvin, beta##AB048276|PARVB|29780|parvin, beta##AF151814|PARVB|29780|parvin, beta##AF237769|PARVB|29780|parvin, beta##AL159142|PARVB|29780|parvin, beta##AF303887|PARVB|29780|parvin, beta##NM_001003828|PARVB|29780|parvin, beta##BC039811|PARVB|29780|parvin, beta##NM_001243385|PARVB|29780|parvin, beta##NM_001137605|PARVG|64098|parvin, gamma##AK309348|PARVG|64098|parvin, gamma##AK293360|PARVG|64098|parvin, gamma##NM_022141|PARVG|64098|parvin, gamma##AK225929|PARVG|64098|parvin, gamma##AK307294|PARVG|64098|parvin, gamma##BC034406|PARVG|64098|parvin, gamma##AF237772|PARVG|64098|parvin, gamma	0.99483	0.0	denovo_WM_7:40:0.332	denovo_WM_7:41:0.332	denovo_WM_7:42:0.332
chr12	8088978	8089091	reg1000752.p1	12.303	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-268	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-45266	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-63568	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	96456	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	129919	-	TSC_hg19_v1_chr12_-_8219032 U62027	129982	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.997807	0.0	
chr2	165617935	165618060	reg1000745.p1	12.300	+	TSC_hg19_v1_chr2_-_165551183 AK001813 AK002057	-66734	-	L76687 NM_004490	-139639	-	TSC_hg19_v1_chr2_-_165477987 AK307744 AK313153	-140004	-	TSC_hg19_v1_chr2_-_165697908 AB023194	79889	-	BC071588 NM_014900 TSC_hg19_v1_chr2_-_165697936	79940	-	TSC_hg19_v1_chr2_-_165698334 AK002054	80330	-	AK001813|COBLL1|22837|COBL-like 1##AK002057|COBLL1|22837|COBL-like 1##L76687|GRB14|2888|growth factor receptor-bound protein 14##NM_004490|GRB14|2888|growth factor receptor-bound protein 14##AK307744|GRB14|2888|growth factor receptor-bound protein 14##AK313153|GRB14|2888|growth factor receptor-bound protein 14##AB023194|COBLL1|22837|COBL-like 1##BC071588|COBLL1|22837|COBL-like 1##NM_014900|COBLL1|22837|COBL-like 1##AK002054|COBLL1|22837|COBL-like 1	0.999354	0.0	denovo_WM_7:-23:0.872
chr17	26870844	26870991	reg1000822.p2	12.298	+	NM_003593 Y11739	-19959	+	TSC_hg19_v1_chr17_+_26800661 AK314684 NM_001145975 NM_001145976 NM_003984 U26209 BC096276 BC096277 BC096278 BC096279 AK091926 AK298388 AK303909 AK303936	-70211	+	CU678258 TSC_hg19_v1_chr17_+_26794963	-76014	+	AF028788 AF028789 TSC_hg19_v1_chr17_-_26879616 AK292329 BC027176 U40998	8693	-	NM_005148 NM_054035 TSC_hg19_v1_chr17_-_26879647 AB593014	8735	-	AY359112 AB057723 AB527641 CU686718 TSC_hg19_v1_chr17_-_26898525 AK055512 BC069228 AK075428 AK297046 AK314583	27612	-	NM_003593|FOXN1|8456|forkhead box N1##Y11739|FOXN1|8456|forkhead box N1##AK314684|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##NM_001145975|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##NM_001145976|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##NM_003984|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##U26209|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096276|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096277|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096278|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096279|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK091926|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK298388|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK303909|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK303936|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AF028788|UNC119|9094|unc-119 homolog (C. elegans)##AF028789|UNC119|9094|unc-119 homolog (C. elegans)##AK292329|UNC119|9094|unc-119 homolog (C. elegans)##BC027176|UNC119|9094|unc-119 homolog (C. elegans)##U40998|UNC119|9094|unc-119 homolog (C. elegans)##NM_005148|UNC119|9094|unc-119 homolog (C. elegans)##NM_054035|UNC119|9094|unc-119 homolog (C. elegans)##AB593014|UNC119|9094|unc-119 homolog (C. elegans)##AY359112|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AB057723|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK055512|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##BC069228|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK075428|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK297046|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK314583|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S	0.995245	0.0	
chr2	10952978	10953103	reg1001023.p2	12.298	+	TSC_hg19_v1_chr2_-_10952912 AK294347 D49489 BC001312 NM_005742	-120	-	TSC_hg19_v1_chr2_-_10952851 DQ891186 DQ894369 AK289428	-212	-	TSC_hg19_v1_chr2_-_10942759 AK225496 U79278	-10336	-	BC026110 NM_002236 TSC_hg19_v1_chr2_+_11052109	99045	+	AK057872 NM_182500 BC120930 AK292828	320176	+	BC027625 NM_152391 TSC_hg19_v1_chr2_+_11295562	342511	+	AK294347|PDIA6|10130|protein disulfide isomerase family A, member 6##D49489|PDIA6|10130|protein disulfide isomerase family A, member 6##BC001312|PDIA6|10130|protein disulfide isomerase family A, member 6##NM_005742|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ891186|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ894369|PDIA6|10130|protein disulfide isomerase family A, member 6##AK289428|PDIA6|10130|protein disulfide isomerase family A, member 6##AK225496|PDIA6|10130|protein disulfide isomerase family A, member 6##U79278|PDIA6|10130|protein disulfide isomerase family A, member 6##BC026110|KCNF1|3754|potassium voltage-gated channel, subfamily F, member 1##NM_002236|KCNF1|3754|potassium voltage-gated channel, subfamily F, member 1##AK057872|C2orf50|130813|chromosome 2 open reading frame 50##NM_182500|C2orf50|130813|chromosome 2 open reading frame 50##BC120930|C2orf50|130813|chromosome 2 open reading frame 50##AK292828|C2orf50|130813|chromosome 2 open reading frame 50##BC027625|PQLC3|130814|PQ loop repeat containing 3##NM_152391|PQLC3|130814|PQ loop repeat containing 3	0.0	0.088089	
chr13	80920371	80920536	reg1000687.p1	12.289	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-5389	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-7411	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-864898	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3535972	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3536047	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5452986	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	1.921079	0.0	denovo_WM_7:-22:0.306	denovo_WM_7:-25:0.450
chr19	16554798	16554950	reg1001066.p1	12.287	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-119105	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-119233	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-246124	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	27902	-	TSC_hg19_v1_chr19_-_16582810 AK291359	27978	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	52096	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.993378	0.0	
chr6	12011352	12011450	reg1001012.p2	12.286	+	NM_001143948 NM_032744	-232122	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-472903	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-628861	-	NM_002114	1322	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	279192	+	TSC_hg19_v1_chr6_+_12514301 D28417	502901	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.0	0.0	
chr5	55289808	55289980	reg1000956.p1	12.284	+	NM_001242636 NM_001242639	-140745	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-142625	+	NM_001166534 AK093439 AX748127	-227169	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	869	-	AK123389 NM_024669	239291	-	NM_005921	821005	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	1.998092	0.0	denovo_WM_7:37:0.227	denovo_WM_7:38:0.740
chr2	30864726	30864865	reg1001016.p1	12.283	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	-194647	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	-410293	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-494919	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	165498	-	AK122747 NM_001253827	487702	-	AY358758 AK225808 TSC_hg19_v1_chr2_-_31361308	496503	-	BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13##AK122747|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253827|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AY358758|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AK225808|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)	1.964659	0.0	denovo_WM_7:-18:0.926	denovo_WM_7:-33:0.685	denovo_WM_7:-34:0.240
chr8	21771236	21771394	reg1001099.p1	12.280	+	AB528923 AF034970 CU689448 DQ890550 DQ896808 AK292126 BC032623 AK226110 AK296671 TSC_hg19_v1_chr8_-_21771202 NM_003974	-150	-	TSC_hg19_v1_chr8_-_21646372 BC041688 NM_001165038 NM_001165039 NM_001495	-124949	-	AY326396 AY941828 U93703 AB529071 CU692022 AF002700 BC033096 TSC_hg19_v1_chr8_-_21645836 AK299623 U97145	-125523	-	TSC_hg19_v1_chr8_+_21777194 NM_015024 BC030785	5874	+	TSC_hg19_v1_chr8_+_21777257 AK291472 AB018288 AF064729 CU689010	5933	+	TSC_hg19_v1_chr8_+_21881644 AK094267	110320	+	AF034970|DOK2|9046|docking protein 2, 56kDa##DQ890550|DOK2|9046|docking protein 2, 56kDa##DQ896808|DOK2|9046|docking protein 2, 56kDa##AK292126|DOK2|9046|docking protein 2, 56kDa##BC032623|DOK2|9046|docking protein 2, 56kDa##AK226110|DOK2|9046|docking protein 2, 56kDa##AK296671|DOK2|9046|docking protein 2, 56kDa##NM_003974|DOK2|9046|docking protein 2, 56kDa##BC041688|GFRA2|2675|GDNF family receptor alpha 2##NM_001165038|GFRA2|2675|GDNF family receptor alpha 2##NM_001165039|GFRA2|2675|GDNF family receptor alpha 2##NM_001495|GFRA2|2675|GDNF family receptor alpha 2##AY326396|GFRA2|2675|GDNF family receptor alpha 2##AY941828|GFRA2|2675|GDNF family receptor alpha 2##U93703|GFRA2|2675|GDNF family receptor alpha 2##AF002700|GFRA2|2675|GDNF family receptor alpha 2##AK299623|GFRA2|2675|GDNF family receptor alpha 2##U97145|GFRA2|2675|GDNF family receptor alpha 2##NM_015024|XPO7|23039|exportin 7##BC030785|XPO7|23039|exportin 7##AK291472|XPO7|23039|exportin 7##AB018288|XPO7|23039|exportin 7##AF064729|XPO7|23039|exportin 7##AK094267|NPM2|10361|nucleophosmin/nucleoplasmin 2	1.304003	0.0	denovo_WM_7:2:0.286	denovo_WM_7:3:0.572	denovo_WM_7:-11:0.312
chr2	160568546	160568690	reg1000820.p1	12.272	+	BX647250 AL834381 TSC_hg19_v1_chr2_-_160473021 NM_013450 AB040909	-95599	-	AK127551 BC107570 TSC_hg19_v1_chr2_-_160472070	-96604	-	AK093494 AX748164 NM_152528 AK129983 NM_001128213 TSC_hg19_v1_chr2_-_160143234 BC029520 NM_001128212	-425470	-	TSC_hg19_v1_chr2_-_160568946 BX641037 BX537650	288	-	TSC_hg19_v1_chr2_+_160569016 AK292836 AK299051 AK022973 NM_022826 AK222880	377	+	TSC_hg19_v1_chr2_+_160569027 BC065014	422	+	BX647250|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AL834381|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##NM_013450|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AB040909|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK127551|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BC107570|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK093494|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_152528|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##AK129983|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128213|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BC029520|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128212|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BX641037|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK292836|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK299051|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK022973|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##NM_022826|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK222880|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##BC065014|MARCH7|64844|membrane-associated ring finger (C3HC4) 7	0.991271	0.0	
chr11	9595075	9595198	reg1001028.p2	12.271	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	-112593	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-113008	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-188916	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	77	+	X62048 TSC_hg19_v1_chr11_+_9595313	189	+	BC051831 TSC_hg19_v1_chr11_+_9595437	297	+	NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)	0.0	0.0	
chr1	99456812	99456964	reg1001447.p1	12.269	+	TSC_hg19_v1_chr1_+_99127278 NM_015976 NM_152238 AK025031 AK223229 AL049989 AF121857 AK298211 BC018105 BC010349	-329580	+	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	-1070282	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	-1070329	-	BC040174 AK295688 BC140086 BC143086 AY634620 BC136350 BC144000 AY574039 FJ472844 NM_001010861 NM_001037317	13424	-	AF541281 NM_001166252 NM_014839 AB007924 AK056665 AY304518 AB384482 BC042963 TSC_hg19_v1_chr1_+_99730047 AK291369 AK297417	273062	+	TSC_hg19_v1_chr1_+_99730067 AF357013 AK300361	273197	+	NM_015976|SNX7|51375|sorting nexin 7##NM_152238|SNX7|51375|sorting nexin 7##AK025031|SNX7|51375|sorting nexin 7##AK223229|SNX7|51375|sorting nexin 7##AL049989|SNX7|51375|sorting nexin 7##AF121857|SNX7|51375|sorting nexin 7##AK298211|SNX7|51375|sorting nexin 7##BC018105|SNX7|51375|sorting nexin 7##BC010349|SNX7|51375|sorting nexin 7##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##BC040174|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AK295688|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC140086|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC143086|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AY634620|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC136350|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC144000|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AY574039|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##FJ472844|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_001010861|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_001037317|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AF541281|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_001166252|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_014839|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AB007924|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AY304518|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##BC042963|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AK291369|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AF357013|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AK300361|LPPR4|9890|lipid phosphate phosphatase-related protein type 4	1.10479	0.373363	CTCF.p2:-2:0.373	denovo_WM_7:-45:0.795
chr6	34131757	34131858	reg1000688.p1	12.269	+	AB385221 EU432124 HQ258665 HQ258669 U92457 BC130526 BC130528 BC144057 NM_000841 X80818 AK308669	-30405	-	BC112314 BC143981 Y00695 BC069675 NM_001040109 NM_001184698 NM_002418	-360033	-	BC039864 NM_181336 TSC_hg19_v1_chr6_-_33756906	-374897	-	NM_002131 NM_145899 NM_145903 TSC_hg19_v1_chr6_+_34204617	72804	+	TSC_hg19_v1_chr6_+_34204649 AK096863 M23616 M23617 NM_145901 NM_145902 AK301434	72843	+	TSC_hg19_v1_chr6_+_34204678 X14957 X14958 AK308245	72864	+	EU432124|GRM4|2914|glutamate receptor, metabotropic 4##HQ258665|GRM4|2914|glutamate receptor, metabotropic 4##HQ258669|GRM4|2914|glutamate receptor, metabotropic 4##U92457|GRM4|2914|glutamate receptor, metabotropic 4##BC130526|GRM4|2914|glutamate receptor, metabotropic 4##BC130528|GRM4|2914|glutamate receptor, metabotropic 4##BC144057|GRM4|2914|glutamate receptor, metabotropic 4##NM_000841|GRM4|2914|glutamate receptor, metabotropic 4##X80818|GRM4|2914|glutamate receptor, metabotropic 4##BC112314|MLN|4295|motilin##BC143981|MLN|4295|motilin##Y00695|MLN|4295|motilin##BC069675|MLN|4295|motilin##NM_001040109|MLN|4295|motilin##NM_001184698|MLN|4295|motilin##NM_002418|MLN|4295|motilin##BC039864|LEMD2|221496|LEM domain containing 2##NM_181336|LEMD2|221496|LEM domain containing 2##NM_002131|HMGA1|3159|high mobility group AT-hook 1##NM_145899|HMGA1|3159|high mobility group AT-hook 1##NM_145903|HMGA1|3159|high mobility group AT-hook 1##AK096863|HMGA1|3159|high mobility group AT-hook 1##M23616|HMGA1|3159|high mobility group AT-hook 1##M23617|HMGA1|3159|high mobility group AT-hook 1##NM_145901|HMGA1|3159|high mobility group AT-hook 1##NM_145902|HMGA1|3159|high mobility group AT-hook 1##AK301434|HMGA1|3159|high mobility group AT-hook 1##X14957|HMGA1|3159|high mobility group AT-hook 1##X14958|HMGA1|3159|high mobility group AT-hook 1##AK308245|HMGA1|3159|high mobility group AT-hook 1	0.999631	0.999382	CTCF.p2:-31:0.999	denovo_WM_7:45:0.722
chr8	8350849	8351000	reg1000973.p2	12.264	+	AK122582 NM_001080826	-111702	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-175036	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-264782	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	208774	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	400014	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	509441	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.0	0.0	
chr1	200831085	200831236	reg1001051.p1	12.258	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-122489	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-192052	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	-192131	-	BC126386 BC126388 AK315339 NM_005298	10963	+	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	29486	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	32837	+	AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106	0.999672	0.0	
chr7	137580349	137580499	reg1000891.p2	12.249	+	TSC_hg19_v1_chr7_+_137531690 BC047556	-48692	+	TSC_hg19_v1_chr7_-_137531587 NM_004717	-48828	-	BC005916 TSC_hg19_v1_chr7_-_137028543 NM_002825 M57399	-551869	-	TSC_hg19_v1_chr7_-_137620668 BC015585	40238	-	NM_001243523	57669	+	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	106370	-	NM_004717|DGKI|9162|diacylglycerol kinase, iota##BC005916|PTN|5764|pleiotrophin##NM_002825|PTN|5764|pleiotrophin##M57399|PTN|5764|pleiotrophin##BC015585|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_001243523|LOC100130880|100130880|uncharacterized LOC100130880##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2	0.970681	0.0	denovo_WM_7:-26:0.804
chr17	70030332	70030497	reg1000836.p1	12.246	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1864718	+	BC033038 NM_170742	-1929420	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1958984	+	TSC_hg19_v1_chr17_-_70116937 AL833139	86524	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	86745	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	86756	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	1.978902	0.0	denovo_WM_7:90:0.968
chr19	45240007	45240159	reg1001018.p2	12.245	+	BC144608 NM_001039213	-37663	+	BC083499 NM_001127893 NM_020219	-65360	+	TSC_hg19_v1_chr19_+_45147209 AK300349 AK094177 BC015542	-92867	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	11898	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	41073	+	TSC_hg19_v1_chr19_+_45312359 BC014065 NM_001013257 NM_005581 X83425 BC036745 X80026 BC050450 AB463427 CU690688 HE572749	72273	+	BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##BC083499|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_001127893|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_020219|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##AK300349|PVR|5817|poliovirus receptor##AK094177|PVR|5817|poliovirus receptor##BC015542|PVR|5817|poliovirus receptor##NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001013257|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_005581|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X83425|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC036745|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X80026|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC050450|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)	1.007033	0.0	denovo_WM_7:-6:0.825
chr4	113200687	113200840	reg1000993.p2	12.243	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-47679	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-134149	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1637485	-	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	6238	-	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	17764	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	236569	-	NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2	0.989819	0.0	denovo_WM_7:74:0.967
chr19	10750632	10750788	reg1000517.p1	12.241	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	-14491	+	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	-37577	+	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	-52762	-	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	13801	-	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	14230	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	14336	+	FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa	0.988909	0.0	
chr7	107279158	107279314	reg1001271.p1	12.241	+	NM_001008405 BT006981 CU678973	-58026	+	TSC_hg19_v1_chr7_+_107220690 AK289401 AK294824 BC008478 BX647653 AF126020	-58564	+	NM_018844	-58815	+	AF030880 NM_000441	21843	+	BC052342 BC037315 BC047092 BC022493 TSC_hg19_v1_chr7_-_107302278	22980	-	AK293352 NM_024814	105042	+	NM_001008405|BCAP29|55973|B-cell receptor-associated protein 29##BT006981|BCAP29|55973|B-cell receptor-associated protein 29##AK289401|BCAP29|55973|B-cell receptor-associated protein 29##AK294824|BCAP29|55973|B-cell receptor-associated protein 29##BC008478|BCAP29|55973|B-cell receptor-associated protein 29##BX647653|BCAP29|55973|B-cell receptor-associated protein 29##AF126020|BCAP29|55973|B-cell receptor-associated protein 29##NM_018844|BCAP29|55973|B-cell receptor-associated protein 29##AF030880|SLC26A4|5172|solute carrier family 26, member 4##NM_000441|SLC26A4|5172|solute carrier family 26, member 4##BC052342|LOC286002|286002|uncharacterized LOC286002##BC037315|LOC286002|286002|uncharacterized LOC286002##BC047092|LOC286002|286002|uncharacterized LOC286002##BC022493|LOC286002|286002|uncharacterized LOC286002##AK293352|CBLL1|79872|Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1##NM_024814|CBLL1|79872|Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1	0.030643	0.0	
chr5	175964438	175964555	reg1000911.p1	12.238	+	TSC_hg19_v1_chr5_-_175964314 AB029023 BC039833 BC063297 NM_014901	-169	-	TSC_hg19_v1_chr5_+_175875393 BC006145 BC014001 AB088120 AB020694	-89097	+	TSC_hg19_v1_chr5_+_175875385 AK304346	-89114	+	TSC_hg19_v1_chr5_-_175964932 AK302385	428	-	AK315055 NM_001171976	5015	+	NM_017675	11846	+	AB029023|RNF44|22838|ring finger protein 44##BC039833|RNF44|22838|ring finger protein 44##BC063297|RNF44|22838|ring finger protein 44##NM_014901|RNF44|22838|ring finger protein 44##BC006145|FAF2|23197|Fas associated factor family member 2##BC014001|FAF2|23197|Fas associated factor family member 2##AB088120|FAF2|23197|Fas associated factor family member 2##AB020694|FAF2|23197|Fas associated factor family member 2##AK304346|FAF2|23197|Fas associated factor family member 2##AK302385|RNF44|22838|ring finger protein 44##AK315055|CDHR2|54825|cadherin-related family member 2##NM_001171976|CDHR2|54825|cadherin-related family member 2##NM_017675|CDHR2|54825|cadherin-related family member 2	0.0	0.0	
chr10	131908084	131908194	reg1001086.p1	12.237	+	TSC_hg19_v1_chr10_-_131762539 AK097335	-145614	-	AL832828 AB527459 HQ258299 BC126130 BC130479 NM_001005463	-146086	-	TSC_hg19_v1_chr10_+_131265507 BC000824	-642625	+	TSC_hg19_v1_chr10_-_131909090 EU250747 AK094118	942	-	TSC_hg19_v1_chr10_+_131934662 NM_001199868 NM_006541 BC005289 AK022131 AF118652	26516	+	TSC_hg19_v1_chr10_+_131934675 AF118649 AK225609	26536	+	AK097335|EBF3|253738|early B-cell factor 3##AL832828|EBF3|253738|early B-cell factor 3##HQ258299|EBF3|253738|early B-cell factor 3##BC126130|EBF3|253738|early B-cell factor 3##BC130479|EBF3|253738|early B-cell factor 3##NM_001005463|EBF3|253738|early B-cell factor 3##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase##EU250747|LOC387723|387723|uncharacterized LOC387723##AK094118|LOC387723|387723|uncharacterized LOC387723##NM_001199868|GLRX3|10539|glutaredoxin 3##NM_006541|GLRX3|10539|glutaredoxin 3##BC005289|GLRX3|10539|glutaredoxin 3##AK022131|GLRX3|10539|glutaredoxin 3##AF118652|GLRX3|10539|glutaredoxin 3##AF118649|GLRX3|10539|glutaredoxin 3##AK225609|GLRX3|10539|glutaredoxin 3	0.970534	0.0	denovo_WM_7:-20:0.667
chrX	78515008	78515156	reg1000789.p2	12.236	+	AF345567 BC104922 BC104924 NM_032553	-88614	+	NM_014499 NM_198333 AK313218 AK292138 BC051875	-314210	+	NM_005296 AK314134	-511874	+	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	107701	-	AK313154 NM_001171581 NM_004867	107945	-	AK097514 NM_001109878 NM_001109879	755172	+	AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##NM_014499|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_198333|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK313218|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK292138|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##BC051875|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_005296|LPAR4|2846|lysophosphatidic acid receptor 4##AK314134|LPAR4|2846|lysophosphatidic acid receptor 4##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A##AK313154|ITM2A|9452|integral membrane protein 2A##NM_001171581|ITM2A|9452|integral membrane protein 2A##NM_004867|ITM2A|9452|integral membrane protein 2A##AK097514|TBX22|50945|T-box 22##NM_001109878|TBX22|50945|T-box 22##NM_001109879|TBX22|50945|T-box 22	0.994082	0.0	denovo_WM_7:1:0.643
chr11	90459465	90459602	reg1000921.p2	12.235	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-475123	+	AK290231 NM_001144073 NM_012124	-503002	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-503331	-	NM_001008781	1625728	+	BC069163 NM_005959 U25341 AY521019	2243306	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2471454	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.996245	0.0	denovo_WM_7:-37:0.717	denovo_WM_7:-38:0.203
chr5	42993466	42993634	reg1001085.p1	12.227	+	TSC_hg19_v1_chr5_-_42993436 AK056817	-104	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-181559	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-236612	+	AB463523 BC067873 AY032883 NM_001014279	46746	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	127451	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	128064	+	AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131	2.547318	0.0	denovo_WM_7:14:0.559	denovo_WM_7:29:0.206	denovo_WM_7:30:0.570	denovo_WM_7:45:0.713
chr22	36847716	36847870	reg1000963.p1	12.226	+	TSC_hg19_v1_chr22_-_36784062 NM_002473	-63735	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-63785	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	-63814	-	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	29886	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	55265	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	55324	-	NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle##BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2	0.980898	0.0	denovo_WM_7:-20:0.216	denovo_WM_7:-23:0.589
chr19	38453055	38453182	reg1001122.p1	12.224	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-55206	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-55261	+	AK302913 AY026504 AK128826 NM_031951	-55844	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	261717	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	267198	-	TSC_hg19_v1_chr19_-_38720336 AK297581	267216	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.998964	0.0	
chr8	73883707	73883864	reg1001019.p1	12.221	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-434142	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-895951	-	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-1127077	-	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	37327	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	121657	-	BC150551 BC150552 NM_001243237	287951	-	AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301	0.99857	0.0	denovo_WM_7:-10:0.494	denovo_WM_7:-11:0.494
chr5	124129725	124129863	reg1001098.p1	12.218	+	BC131507 AB033107 BC151226 NM_020747	-49006	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1281912	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1370650	-	NM_001146319 AK316288 AK300154	1566020	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1629049	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1629393	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	2.039974	0.0	denovo_WM_7:46:0.845	denovo_WM_7:61:0.741	denovo_WM_7:62:0.243
chrX	9310014	9310146	reg1000869.p2	12.215	+	BC120955 BC120956 NM_205849	-308978	-	BC113449 BC143805 NM_001171186 BC112022 AF494343 NM_174951	-540680	-	TSC_hg19_v1_chrX_-_8700193 BC137426 BC137427 M97252 NM_000216 S60085	-609873	-	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	121267	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	123154	+	Z48804 BC015657 BC068977 NM_000273	423880	-	BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##BC113449|FAM9A|171482|family with sequence similarity 9, member A##BC143805|FAM9A|171482|family with sequence similarity 9, member A##NM_001171186|FAM9A|171482|family with sequence similarity 9, member A##BC112022|FAM9A|171482|family with sequence similarity 9, member A##AF494343|FAM9A|171482|family with sequence similarity 9, member A##NM_174951|FAM9A|171482|family with sequence similarity 9, member A##BC137426|KAL1|3730|Kallmann syndrome 1 sequence##BC137427|KAL1|3730|Kallmann syndrome 1 sequence##M97252|KAL1|3730|Kallmann syndrome 1 sequence##NM_000216|KAL1|3730|Kallmann syndrome 1 sequence##S60085|KAL1|3730|Kallmann syndrome 1 sequence##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143	0.995942	0.0	denovo_WM_7:-4:0.900
chrX	70734271	70734413	reg1001082.p1	12.212	+	D90359 NM_004606 NM_138923 TSC_hg19_v1_chrX_+_70586179 AK310201 AB300418	-148196	+	AF140690 NM_012278 BC108901 AF110225 AB529088	-212702	+	TSC_hg19_v1_chrX_+_70503534 U02493 U89867	-230799	+	NM_181672 NM_181673 TSC_hg19_v1_chrX_+_70752924 AL833085	18583	+	TSC_hg19_v1_chrX_+_70752953 AK026724 AK300267 BX537844 BC038180 BC014434	18621	+	TSC_hg19_v1_chrX_+_70765496 AL050366	31180	+	D90359|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##NM_004606|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##NM_138923|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##AK310201|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##AB300418|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##AF140690|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##NM_012278|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##BC108901|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##AF110225|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##U02493|NONO|4841|non-POU domain containing, octamer-binding##U89867|NONO|4841|non-POU domain containing, octamer-binding##NM_181672|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##NM_181673|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##AL833085|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##AK300267|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##BX537844|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##BC038180|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##BC014434|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##AL050366|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	0.997869	0.0	
chr14	23182449	23182619	reg1000463.p2	12.211	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-115345	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-124400	-	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	-124448	-	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	53311	+	TSC_hg19_v1_chr14_-_23284568 AK025377	102045	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	102098	-	AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.994142	0.0	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239	denovo_WM_7:43:0.239	denovo_WM_7:44:0.239
chr15	75078248	75078393	reg1001232.p1	12.210	+	X60114 TSC_hg19_v1_chr15_+_75074849 AK298245 AK223626 AK310136 AK312669 BC104847 BC104875 X59932	-3464	+	TSC_hg19_v1_chr15_+_75074420 BC106073 NM_001127190 NM_004383 AK290531	-3895	+	TSC_hg19_v1_chr15_+_75041185 NM_000761 BC067424 BC067425 BC067426 BC067427 BC067428 BC067429	-37128	+	AK300517 AK294807 AK309976 AK291819 AY358724 NM_021819	26852	+	AK024055 NM_001030005 AB072900 BC018026 AY286501	40670	+	TSC_hg19_v1_chr15_-_75135477 AB528889 CU691158 AK075047 BC056423 AK299380	57133	-	X60114|CSK|1445|c-src tyrosine kinase##AK298245|CSK|1445|c-src tyrosine kinase##AK223626|CSK|1445|c-src tyrosine kinase##AK310136|CSK|1445|c-src tyrosine kinase##AK312669|CSK|1445|c-src tyrosine kinase##BC104847|CSK|1445|c-src tyrosine kinase##BC104875|CSK|1445|c-src tyrosine kinase##X59932|CSK|1445|c-src tyrosine kinase##BC106073|CSK|1445|c-src tyrosine kinase##NM_001127190|CSK|1445|c-src tyrosine kinase##NM_004383|CSK|1445|c-src tyrosine kinase##AK290531|CSK|1445|c-src tyrosine kinase##NM_000761|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067424|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067425|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067426|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067427|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067428|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067429|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##AK300517|LMAN1L|79748|lectin, mannose-binding, 1 like##AK294807|LMAN1L|79748|lectin, mannose-binding, 1 like##AK309976|LMAN1L|79748|lectin, mannose-binding, 1 like##AK291819|LMAN1L|79748|lectin, mannose-binding, 1 like##AY358724|LMAN1L|79748|lectin, mannose-binding, 1 like##NM_021819|LMAN1L|79748|lectin, mannose-binding, 1 like##AK024055|CPLX3|594855|complexin 3##NM_001030005|CPLX3|594855|complexin 3##AB072900|CPLX3|594855|complexin 3##BC018026|CPLX3|594855|complexin 3##AY286501|CPLX3|594855|complexin 3##AK075047|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC056423|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AK299380|ULK3|25989|unc-51-like kinase 3 (C. elegans)	0.979396	0.0	denovo_WM_7:28:0.391	denovo_WM_7:30:0.390
chr10	121465009	121465158	reg1000582.p3	12.209	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-53947	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-54008	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-54030	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	20455	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	20531	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	20622	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.058543	0.0	
chr2	147419175	147419309	reg1001047.p1	12.209	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-2141321	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	-2141611	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-2144039	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	1182875	+	TSC_hg19_v1_chr2_+_148602300 AK314124	1183093	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	1183403	+	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA	0.996717	0.779476	CTCF.p2:19:0.779	denovo_WM_7:-26:0.470	denovo_WM_7:-27:0.527
chr1	16290561	16290727	reg1001119.p1	12.207	+	TSC_hg19_v1_chr1_+_16259065 BC172907	-31533	+	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	-116265	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-128288	-	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	11826	-	AK127425 BC017946 NM_178840 CU676116	40119	+	TSC_hg19_v1_chr1_-_16344539 DQ892716 DQ895966 EU176383 EU831930 EU832025 AL832181 AF155908 AJ243191 CR749298 BX537990 AK075151 AK095911 CR749419	53869	-	AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##AK094772|FLJ37453|729614|uncharacterized LOC729614##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17##AK127425|C1orf64|149563|chromosome 1 open reading frame 64##BC017946|C1orf64|149563|chromosome 1 open reading frame 64##NM_178840|C1orf64|149563|chromosome 1 open reading frame 64##DQ892716|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##DQ895966|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU176383|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU831930|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU832025|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AL832181|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AF155908|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AJ243191|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##CR749298|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##BX537990|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK075151|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK095911|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##CR749419|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)	0.996051	0.0	denovo_WM_7:-17:0.303	denovo_WM_7:-18:0.425
chr1	205257653	205257793	reg1000781.p2	12.205	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-21089	+	AK293734 NM_001242925	-59665	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-60640	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	33120	-	BC036076 TSC_hg19_v1_chr1_-_205313311	55587	-	AK299227 AK001610 NM_018203 AK096590	68317	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	1.838971	0.0	denovo_WM_7:10:0.237	denovo_WM_7:15:0.288	denovo_WM_7:32:0.488
chr14	97875251	97875431	reg1000925.p1	12.205	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-611626	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-906557	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-906595	+	AK098639 NM_182560	1302608	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1862276	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1862549	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	1.982242	0.0	denovo_WM_7:29:0.474	denovo_WM_7:30:0.474
chr1	57045353	57045488	reg1000642.p2	12.200	+	TSC_hg19_v1_chr1_-_57045237 NM_003713	-175	-	AK312439 TSC_hg19_v1_chr1_-_57045216	-203	-	AF017786 U79294 AF480883 TSC_hg19_v1_chr1_-_57045132	-290	-	TSC_hg19_v1_chr1_+_57110986 AK314011 NM_006252 U06454 BC069680 BC069740 BC069823 EF056019	65482	+	AK125198 NM_001004303 TSC_hg19_v1_chr1_-_57285379	239953	-	NM_000562 TSC_hg19_v1_chr1_+_57320466 AK309596 BC020702 BC132911 BC132913 HQ258328	275088	+	NM_003713|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK312439|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF017786|PPAP2B|8613|phosphatidic acid phosphatase type 2B##U79294|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF480883|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK314011|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##NM_006252|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##U06454|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069680|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069740|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069823|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##EF056019|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##AK125198|C1orf168|199920|chromosome 1 open reading frame 168##NM_001004303|C1orf168|199920|chromosome 1 open reading frame 168##NM_000562|C8A|731|complement component 8, alpha polypeptide##AK309596|C8A|731|complement component 8, alpha polypeptide##BC020702|C8A|731|complement component 8, alpha polypeptide##BC132911|C8A|731|complement component 8, alpha polypeptide##BC132913|C8A|731|complement component 8, alpha polypeptide##HQ258328|C8A|731|complement component 8, alpha polypeptide	1.01339	0.0	denovo_WM_7:-13:0.457	denovo_WM_7:-14:0.457
chr17	33288372	33288525	reg1001009.p2	12.197	+	CU693272 AK301773 TSC_hg19_v1_chr17_-_33288425 AK225729 BC026125 AK225728 D78333	-13	-	NM_207313	-380681	+	BC133004 BC136710 BC142651 AK126768 NM_207454	-382096	-	TSC_hg19_v1_chr17_-_33288480 AK302344 BC027591 NM_001193529 NM_001193530 NM_006584	54	-	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	141	+	TSC_hg19_v1_chr17_+_33307530 NM_002311 NM_013975 BC068005 AK300363 AK308407 U40671 X84740 BC009026	19140	+	AK301773|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225729|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC026125|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225728|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##D78333|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_207313|TMEM132E|124842|transmembrane protein 132E##BC133004|C17orf102|400591|chromosome 17 open reading frame 102##BC136710|C17orf102|400591|chromosome 17 open reading frame 102##BC142651|C17orf102|400591|chromosome 17 open reading frame 102##AK126768|C17orf102|400591|chromosome 17 open reading frame 102##NM_207454|C17orf102|400591|chromosome 17 open reading frame 102##AK302344|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC027591|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193529|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193530|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_006584|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830##NM_002311|LIG3|3980|ligase III, DNA, ATP-dependent##NM_013975|LIG3|3980|ligase III, DNA, ATP-dependent##BC068005|LIG3|3980|ligase III, DNA, ATP-dependent##AK300363|LIG3|3980|ligase III, DNA, ATP-dependent##AK308407|LIG3|3980|ligase III, DNA, ATP-dependent##U40671|LIG3|3980|ligase III, DNA, ATP-dependent##X84740|LIG3|3980|ligase III, DNA, ATP-dependent##BC009026|LIG3|3980|ligase III, DNA, ATP-dependent	0.971611	0.0	denovo_WM_7:-9:0.972
chr17	8099451	8099584	reg1000747.p1	12.197	+	TSC_hg19_v1_chr17_-_8093499 NM_017622	-5990	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	-6113	-	CU687070 BC006292 TSC_hg19_v1_chr17_-_8079699 AK127891 AK315666 AK027813 BC119730 BC119731 BC127649 BC127650 AY358525 BC070231 NM_032354 NM_183065	-19857	-	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	14366	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	51845	-	TSC_hg19_v1_chr17_-_8151373 NM_025099	51875	-	NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##BC006292|TMEM107|84314|transmembrane protein 107##AK315666|TMEM107|84314|transmembrane protein 107##AK027813|TMEM107|84314|transmembrane protein 107##BC119730|TMEM107|84314|transmembrane protein 107##BC119731|TMEM107|84314|transmembrane protein 107##BC127649|TMEM107|84314|transmembrane protein 107##BC127650|TMEM107|84314|transmembrane protein 107##AY358525|TMEM107|84314|transmembrane protein 107##BC070231|TMEM107|84314|transmembrane protein 107##NM_032354|TMEM107|84314|transmembrane protein 107##NM_183065|TMEM107|84314|transmembrane protein 107##BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##NM_025099|CTC1|80169|CTS telomere maintenance complex component 1	0.0	0.0	
chr1	88768946	88769063	reg1000958.p1	12.197	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-971589	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-971679	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-974323	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	381091	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	588207	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	588269	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	0.997751	0.0	denovo_WM_7:50:0.834
chr5	10579202	10579382	reg1001044.p1	12.197	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-14850	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-137140	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-137289	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	181967	-	TSC_hg19_v1_chr5_-_10761341 BC002726	182050	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	182107	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	1.254221	0.0	denovo_WM_7:-5:0.310	denovo_WM_7:-6:0.310	denovo_WM_7:-7:0.310
chr4	57336076	57336199	reg1000852.p1	12.193	+	TSC_hg19_v1_chr4_+_57333798 BC040134 BX537991 AF038851 BC046143 BC065018 AF069765 BC032609 AK225430 AK307397 AB590681 AF077019	-2347	+	TSC_hg19_v1_chr4_+_57333762 NM_006947 BC017057 BC056901 BC105583	-2376	+	TSC_hg19_v1_chr4_+_57302451 X53793 BT006988 CU679667 DQ890605 DQ893056 DQ893776 DQ896305 AK308527	-33600	+	AY439003 NM_206919	35237	+	AB019573 AB463756 AM393649 DQ892193 EU176669 TSC_hg19_v1_chr4_-_57522247	186020	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	186441	-	BC040134|SRP72|6731|signal recognition particle 72kDa##BX537991|SRP72|6731|signal recognition particle 72kDa##AF038851|SRP72|6731|signal recognition particle 72kDa##BC046143|SRP72|6731|signal recognition particle 72kDa##BC065018|SRP72|6731|signal recognition particle 72kDa##AF069765|SRP72|6731|signal recognition particle 72kDa##BC032609|SRP72|6731|signal recognition particle 72kDa##AK225430|SRP72|6731|signal recognition particle 72kDa##AK307397|SRP72|6731|signal recognition particle 72kDa##AF077019|SRP72|6731|signal recognition particle 72kDa##NM_006947|SRP72|6731|signal recognition particle 72kDa##BC017057|SRP72|6731|signal recognition particle 72kDa##BC056901|SRP72|6731|signal recognition particle 72kDa##BC105583|SRP72|6731|signal recognition particle 72kDa##X53793|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BT006988|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ890605|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893056|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893776|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ896305|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK308527|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AY439003|ARL9|132946|ADP-ribosylation factor-like 9##NM_206919|ARL9|132946|ADP-ribosylation factor-like 9##AB019573|HOPX|84525|HOP homeobox##AM393649|HOPX|84525|HOP homeobox##DQ892193|HOPX|84525|HOP homeobox##EU176669|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox	0.995939	0.0	denovo_WM_7:8:0.315	denovo_WM_7:9:0.315	denovo_WM_7:10:0.315
chr8	131340398	131340534	reg1000844.p1	12.193	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-311583	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-311772	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-311807	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	115565	-	NM_001115	712368	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1575891	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.0	0.0	
chr5	55284922	55285071	reg1001222.p1	12.192	+	NM_001242636 NM_001242639	-135847	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-137727	+	NM_001166534 AK093439 AX748127	-222271	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	5767	-	AK123389 NM_024669	244189	-	NM_005921	825903	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	1.985468	0.0	denovo_WM_7:-5:0.343	denovo_WM_7:-6:0.481	denovo_WM_7:-26:0.491	denovo_WM_7:-27:0.286	denovo_WM_7:-28:0.214
chr5	146833520	146833649	reg1000861.p2	12.191	+	CU691634 AB384367 EU832180 EU832273 TSC_hg19_v1_chr5_-_146833229 BC039006 D78014 AK297223 NM_001387 Y07818	-319	-	AK094580 NM_001112724 NM_145001 TSC_hg19_v1_chr5_+_146614587 AK315942 BC021666 AK299099	-218978	+	AK294659 NM_181677 NM_181678 AK295347	-372562	-	EU007906 CU687310 EU832163 EU832257 TSC_hg19_v1_chr5_-_146889506	55882	-	BC077077 NM_001197294 TSC_hg19_v1_chr5_-_146889632	56042	-	BC003189 AB011127 TSC_hg19_v1_chr5_-_147162128 AK291280	328510	-	EU832180|DPYSL3|1809|dihydropyrimidinase-like 3##EU832273|DPYSL3|1809|dihydropyrimidinase-like 3##BC039006|DPYSL3|1809|dihydropyrimidinase-like 3##D78014|DPYSL3|1809|dihydropyrimidinase-like 3##AK297223|DPYSL3|1809|dihydropyrimidinase-like 3##NM_001387|DPYSL3|1809|dihydropyrimidinase-like 3##Y07818|DPYSL3|1809|dihydropyrimidinase-like 3##AK094580|STK32A|202374|serine/threonine kinase 32A##NM_001112724|STK32A|202374|serine/threonine kinase 32A##NM_145001|STK32A|202374|serine/threonine kinase 32A##AK315942|STK32A|202374|serine/threonine kinase 32A##BC021666|STK32A|202374|serine/threonine kinase 32A##AK299099|STK32A|202374|serine/threonine kinase 32A##AK294659|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_181677|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_181678|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##AK295347|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##EU007906|DPYSL3|1809|dihydropyrimidinase-like 3##EU832163|DPYSL3|1809|dihydropyrimidinase-like 3##EU832257|DPYSL3|1809|dihydropyrimidinase-like 3##BC077077|DPYSL3|1809|dihydropyrimidinase-like 3##NM_001197294|DPYSL3|1809|dihydropyrimidinase-like 3##BC003189|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AB011127|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AK291280|JAKMIP2|9832|janus kinase and microtubule interacting protein 2	1.776763	0.994966	CTCF.p2:20:0.995	denovo_WM_7:-30:0.428	denovo_WM_7:-31:0.383	denovo_WM_7:-45:0.353	denovo_WM_7:-47:0.382
chr9	110636971	110637114	reg1001076.p2	12.189	+	TSC_hg19_v1_chr9_-_110252048 NM_004235	-384996	-	AF105036 AF022184 TSC_hg19_v1_chr9_-_110251847 U70663	-385202	-	HM026463 CU688792 CU689020 DQ891793 DQ894975 AB385001 TSC_hg19_v1_chr9_-_110251402 BC030811 BC029923 AK313489	-385594	-	CU689742 TSC_hg19_v1_chr9_-_111618267 BC033789 AK313871 NM_006686	981199	-	BC014610 AK314981 NM_006687	987531	+	BC033094 TSC_hg19_v1_chr9_-_111696232 CR749385 AK304742	1059199	-	NM_004235|KLF4|9314|Kruppel-like factor 4 (gut)##AF105036|KLF4|9314|Kruppel-like factor 4 (gut)##AF022184|KLF4|9314|Kruppel-like factor 4 (gut)##U70663|KLF4|9314|Kruppel-like factor 4 (gut)##HM026463|KLF4|9314|Kruppel-like factor 4 (gut)##DQ891793|KLF4|9314|Kruppel-like factor 4 (gut)##DQ894975|KLF4|9314|Kruppel-like factor 4 (gut)##BC030811|KLF4|9314|Kruppel-like factor 4 (gut)##BC029923|KLF4|9314|Kruppel-like factor 4 (gut)##AK313489|KLF4|9314|Kruppel-like factor 4 (gut)##BC033789|ACTL7B|10880|actin-like 7B##AK313871|ACTL7B|10880|actin-like 7B##NM_006686|ACTL7B|10880|actin-like 7B##BC014610|ACTL7A|10881|actin-like 7A##AK314981|ACTL7A|10881|actin-like 7A##NM_006687|ACTL7A|10881|actin-like 7A##BC033094|IKBKAP|8518|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein##CR749385|IKBKAP|8518|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein##AK304742|IKBKAP|8518|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	0.831712	0.027769	denovo_WM_7:-15:0.832
chr3	16870415	16870522	reg1000937.p2	12.185	+	U65918 U66726 U66078 BC027595 NM_001351	-223502	-	BX648638 AK303026 NM_001190811	-224198	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-315244	-	AB029015 NM_001144382	55983	+	BC036392 NM_015184	104113	+	AK310539 NM_001134381	871043	-	U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5	0.997499	0.067865	
chr4	86678296	86678389	reg1000938.p2	12.185	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-281999	+	NM_014991	-790799	-	NM_001263 U65887	-1174249	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	21506	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	21556	+	AK307423 TSC_hg19_v1_chr4_+_86749064	70712	+	NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24	0.99926	0.762273	CTCF.p2:-6:0.762	denovo_WM_7:31:0.295	denovo_WM_7:32:0.295	denovo_WM_7:33:0.295
chr11	75535569	75535706	reg1000746.p2	12.177	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-9359	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-9415	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-55714	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	381875	-	TSC_hg19_v1_chr11_-_75921806 AK075540	386167	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	556371	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.996825	0.0	
chr1	23903798	23903978	reg1001143.p2	12.177	+	NM_002167 X69111	-17604	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-17904	-	L22846 NM_004091	-46177	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	114392	+	TSC_hg19_v1_chr1_+_24018295 BC018970	114411	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	166016	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.999762	0.0	denovo_WM_7:-51:0.298	denovo_WM_7:-52:0.298	denovo_WM_7:-53:0.298
chr21	47935302	47935408	reg1000904.p1	12.176	+	AK056738 TSC_hg19_v1_chr21_+_47878972 AB273729	-56359	+	TSC_hg19_v1_chr21_+_47878854 AK303351 NM_001146114 NM_001146115 NM_001146116 NM_015151 NM_206889 NM_206890 NM_206891 BC038443 BC033718 AF490768	-56493	+	TSC_hg19_v1_chr21_-_47878602 AK127572	-56754	-	BC001766 TSC_hg19_v1_chr21_-_48024996 BC041935 CS301701 CS301702 NM_006272	89654	-	TSC_hg19_v1_chr21_+_48055078 AK123650	119722	+	NM_001242864 NM_001242865 NM_001242866 NM_001535 NM_206962 TSC_hg19_v1_chr21_+_48055572 AK123352 AY786414 FJ436410 FJ436411 FJ436412 U79286 X99209 U80213 AK312573 AL833586	120188	+	AK056738|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AB273729|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AK303351|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146114|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146115|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146116|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_015151|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206889|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206890|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206891|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC038443|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC033718|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AF490768|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC001766|S100B|6285|S100 calcium binding protein B##BC041935|S100B|6285|S100 calcium binding protein B##NM_006272|S100B|6285|S100 calcium binding protein B##AK123650|PRMT2|3275|protein arginine methyltransferase 2##NM_001242864|PRMT2|3275|protein arginine methyltransferase 2##NM_001242865|PRMT2|3275|protein arginine methyltransferase 2##NM_001242866|PRMT2|3275|protein arginine methyltransferase 2##NM_001535|PRMT2|3275|protein arginine methyltransferase 2##NM_206962|PRMT2|3275|protein arginine methyltransferase 2##AK123352|PRMT2|3275|protein arginine methyltransferase 2##AY786414|PRMT2|3275|protein arginine methyltransferase 2##FJ436410|PRMT2|3275|protein arginine methyltransferase 2##FJ436411|PRMT2|3275|protein arginine methyltransferase 2##FJ436412|PRMT2|3275|protein arginine methyltransferase 2##U79286|PRMT2|3275|protein arginine methyltransferase 2##X99209|PRMT2|3275|protein arginine methyltransferase 2##U80213|PRMT2|3275|protein arginine methyltransferase 2##AK312573|PRMT2|3275|protein arginine methyltransferase 2##AL833586|PRMT2|3275|protein arginine methyltransferase 2	1.575005	0.0	denovo_WM_7:16:0.516	denovo_WM_7:17:0.443
chr1	206853075	206853209	reg1001174.p1	12.174	+	AB529015 BC037269 AF327561 TSC_hg19_v1_chr1_+_206809124 AF186774	-44032	+	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	-44298	+	TSC_hg19_v1_chr1_-_206785905 NM_001201478 NM_006893	-67259	-	TSC_hg19_v1_chr1_+_206858308 BC036060 NM_004759 NM_032960 BC052584 AB590627 X75346	5329	+	AF043333 AY029171 CR541993 CR542028 AB587432 M57627 BC104252 BC104253 BC022315 NM_000572 EU751618 EU751619	92737	-	AY040367 NM_153758 AB463800	119084	+	BC037269|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF327561|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186774|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001201478|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_006893|EIF2D|1939|eukaryotic translation initiation factor 2D##BC036060|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_004759|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_032960|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC052584|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##X75346|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##AF043333|IL10|3586|interleukin 10##AY029171|IL10|3586|interleukin 10##CR541993|IL10|3586|interleukin 10##CR542028|IL10|3586|interleukin 10##M57627|IL10|3586|interleukin 10##BC104252|IL10|3586|interleukin 10##BC104253|IL10|3586|interleukin 10##BC022315|IL10|3586|interleukin 10##NM_000572|IL10|3586|interleukin 10##AY040367|IL19|29949|interleukin 19##NM_153758|IL19|29949|interleukin 19	0.99033	0.0	denovo_WM_7:-57:0.237	denovo_WM_7:-58:0.237	denovo_WM_7:-59:0.237	denovo_WM_7:-60:0.237
chr11	67777161	67777289	reg1001290.p1	12.173	+	TSC_hg19_v1_chr11_+_67776039 EF411198 NM_001161473	-1194	+	TSC_hg19_v1_chr11_-_67771527 BC101568 BC105104 BC025669 AJ422142 AJ271326 BC092472 BC033623 NM_030930	-5658	-	TSC_hg19_v1_chr11_-_67572800 BC063712 BC110365	-204473	-	TSC_hg19_v1_chr11_+_67777790 NM_000694 NM_001030010 BC002553 AK291505	565	+	TSC_hg19_v1_chr11_+_67777796 AK092029 AX747322 U10868 BC013584 BC033099	590	+	TSC_hg19_v1_chr11_+_67798158 AK302449 NM_002496 AK223114 BC119753 BC119754 AK314546 U65579 AK002110	20933	+	EF411198|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001161473|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC101568|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC105104|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC025669|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##AJ422142|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##AJ271326|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC092472|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC033623|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##NM_030930|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC063712|FAM86C2P|645332|family with sequence similarity 86, member A pseudogene##BC110365|FAM86C2P|645332|family with sequence similarity 86, member A pseudogene##NM_000694|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001030010|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC002553|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK291505|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK092029|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##U10868|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC013584|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC033099|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK302449|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##NM_002496|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK223114|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##BC119753|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##BC119754|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK314546|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##U65579|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK002110|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)	0.0	0.2796	CTCF.p2:-15:0.280
chr19	4399275	4399406	reg1000898.p1	12.173	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-55781	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-56590	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-60542	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	1053	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	1213	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	3376	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.99723	0.0	
chr10	26657499	26657631	reg1000961.p2	12.170	+	M74826 BC029517 M81882 TSC_hg19_v1_chr10_+_26505702 BC126327 BC126329 AB527954 HQ258311	-151900	+	NM_000818 NM_001134366	-152330	+	AK310494 TSC_hg19_v1_chr10_+_26223169 AF229172 AY101367 BC036079 BC045538	-434385	+	TSC_hg19_v1_chr10_+_26727269 NM_019043	69706	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	69752	+	TSC_hg19_v1_chr10_+_26727679 BC054516	70103	+	M74826|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC029517|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##M81882|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126327|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126329|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##HQ258311|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_000818|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_001134366|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##AK310494|MYO3A|53904|myosin IIIA##AF229172|MYO3A|53904|myosin IIIA##AY101367|MYO3A|53904|myosin IIIA##BC036079|MYO3A|53904|myosin IIIA##BC045538|MYO3A|53904|myosin IIIA##NM_019043|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	0.967252	0.0	denovo_WM_7:-12:0.634
chrX	40067939	40068086	reg1001318.p1	12.168	+	BC114220 NM_001123383 NM_001123384	-31431	-	AF317391 AF317392 AY316592 TSC_hg19_v1_chrX_-_39956720 NM_001123385 NM_017745	-111320	-	TSC_hg19_v1_chrX_+_38663536 AK001248	-1404472	+	AK297760 AK075382 TSC_hg19_v1_chrX_+_40440221 AF248966 AY038990 NM_005765 AK296614	372174	+	AF291814 TSC_hg19_v1_chrX_+_40440231 AK293510 BC084541 AK297007 AF109363	372230	+	TSC_hg19_v1_chrX_+_40440264 AK314633 AK315948	372260	+	BC114220|BCOR|54880|BCL6 corepressor##NM_001123383|BCOR|54880|BCL6 corepressor##NM_001123384|BCOR|54880|BCL6 corepressor##AF317391|BCOR|54880|BCL6 corepressor##AF317392|BCOR|54880|BCL6 corepressor##AY316592|BCOR|54880|BCL6 corepressor##NM_001123385|BCOR|54880|BCL6 corepressor##NM_017745|BCOR|54880|BCL6 corepressor##AK001248|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AK297760|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK075382|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF248966|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AY038990|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##NM_005765|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK296614|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF291814|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK293510|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##BC084541|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK297007|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF109363|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK314633|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK315948|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2	0.996044	0.0	
chr16	85257857	85258037	reg1000758.p1	12.167	+	BC093665 BC111944 AK126284 NM_198491	-111893	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-196577	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-212818	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	387074	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	389006	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	464595	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	1.979439	0.0	denovo_WM_7:-15:0.265	denovo_WM_7:-16:0.715	denovo_WM_7:-31:0.848
chr4	75072281	75072440	reg1001035.p2	12.164	+	TSC_hg19_v1_chr4_+_75023834 AX794782 BC037529 NM_001144978 BC041943 AX794779	-48495	+	NM_002089 TSC_hg19_v1_chr4_-_74965027	-107338	-	CR542171 CU677427 AB590957 X53799 M57731 BC015753 BC053653 TSC_hg19_v1_chr4_-_74964913 AK308504 M36820 AK311304 BC005276	-107485	-	AK289455 BC127938 BC127939 DQ235269 AY358920 NM_001013442 DQ235264 DQ235265 DQ235266 DQ235267 DQ235268	101859	+	TSC_hg19_v1_chr4_+_75230861 AK314959 D30783 NM_001432 BC035806 BC136404 BC136405 CR541887	158580	+	BC009799 M30704 NM_001657	238492	+	BC037529|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##NM_001144978|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##BC041943|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##NM_002089|CXCL2|2920|chemokine (C-X-C motif) ligand 2##CR542171|CXCL2|2920|chemokine (C-X-C motif) ligand 2##X53799|CXCL2|2920|chemokine (C-X-C motif) ligand 2##M57731|CXCL2|2920|chemokine (C-X-C motif) ligand 2##BC015753|CXCL2|2920|chemokine (C-X-C motif) ligand 2##BC053653|CXCL2|2920|chemokine (C-X-C motif) ligand 2##M36820|CXCL2|2920|chemokine (C-X-C motif) ligand 2##AK289455|EPGN|255324|epithelial mitogen homolog (mouse)##BC127938|EPGN|255324|epithelial mitogen homolog (mouse)##BC127939|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235269|EPGN|255324|epithelial mitogen homolog (mouse)##AY358920|EPGN|255324|epithelial mitogen homolog (mouse)##NM_001013442|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235264|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235265|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235266|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235267|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235268|EPGN|255324|epithelial mitogen homolog (mouse)##AK314959|EREG|2069|epiregulin##D30783|EREG|2069|epiregulin##NM_001432|EREG|2069|epiregulin##BC035806|EREG|2069|epiregulin##BC136404|EREG|2069|epiregulin##BC136405|EREG|2069|epiregulin##CR541887|EREG|2069|epiregulin##BC009799|AREG|374|amphiregulin##M30704|AREG|374|amphiregulin##NM_001657|AREG|374|amphiregulin	1.843845	0.0	denovo_WM_7:12:0.897	denovo_WM_7:-39:0.816
chr2	114617395	114617521	reg1001043.p1	12.160	+	AK025657 AK315719 TSC_hg19_v1_chr2_-_114514220 BC050096 BC018537 NM_025181	-103161	-	AF529364 CU676258 TSC_hg19_v1_chr2_-_114514079 AY358620	-103380	-	TSC_hg19_v1_chr2_+_114384849 AK289496 AF095350 AF095351 BC126129 BC144050 BC144052	-232552	+	TSC_hg19_v1_chr2_+_114647549 BC044590 NM_005721 AF127773	30089	+	TSC_hg19_v1_chr2_+_114647665 AK316213	30207	+	TSC_hg19_v1_chr2_+_114647673 AK303988	30214	+	AK025657|SLC35F5|80255|solute carrier family 35, member F5##AK315719|SLC35F5|80255|solute carrier family 35, member F5##BC050096|SLC35F5|80255|solute carrier family 35, member F5##BC018537|SLC35F5|80255|solute carrier family 35, member F5##NM_025181|SLC35F5|80255|solute carrier family 35, member F5##AF529364|SLC35F5|80255|solute carrier family 35, member F5##AY358620|SLC35F5|80255|solute carrier family 35, member F5##AK289496|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095350|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095351|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC126129|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144050|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144052|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC044590|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##NM_005721|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AF127773|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK316213|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK303988|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)	0.033336	0.0	
chr2	75326022	75326149	reg1000806.p2	12.157	+	TSC_hg19_v1_chr2_+_75185771 NM_019896 BC031331	-140300	+	TSC_hg19_v1_chr2_-_75062285 BC013295	-263834	-	TSC_hg19_v1_chr2_+_75061273 AF148513 BC021116 BC064369 AK290357	-264825	+	AK289765 NM_001058 NM_015727	100543	-	BC016157 TSC_hg19_v1_chr2_-_75788066	461962	-	TSC_hg19_v1_chr2_-_75788091 NM_001135032	462005	-	NM_019896|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC031331|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##AF148513|HK2|3099|hexokinase 2##BC021116|HK2|3099|hexokinase 2##BC064369|HK2|3099|hexokinase 2##AK290357|HK2|3099|hexokinase 2##AK289765|TACR1|6869|tachykinin receptor 1##NM_001058|TACR1|6869|tachykinin receptor 1##NM_015727|TACR1|6869|tachykinin receptor 1##BC016157|FAM176A|84141|family with sequence similarity 176, member A##NM_001135032|FAM176A|84141|family with sequence similarity 176, member A	0.991712	0.053488	denovo_WM_7:-36:0.552
chr14	82658851	82659002	reg1001250.p1	12.150	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-658699	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-658778	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-794100	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	3337547	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	3337615	+	TSC_hg19_v1_chr14_+_85999692 AK297248	3340659	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	1.491512	0.0	denovo_WM_7:-16:0.384	denovo_WM_7:-31:0.228	denovo_WM_7:-32:0.333
chr19	45953967	45954085	reg1000796.p1	12.146	+	TSC_hg19_v1_chr19_-_45927176 NM_001166049 NM_001983	-26851	-	TSC_hg19_v1_chr19_-_45927167 AF433652 AF001925 M13194 M28650	-26869	-	TSC_hg19_v1_chr19_-_45927109 BC008930 AB069681 AK314884	-26916	-	TSC_hg19_v1_chr19_+_45971253 EU178109 EU178110 EU178111 EU178112 EU178113 EU178114 EU178115 EU178116 L49169 NM_001114171 NM_006732 AK097324 AK225070 BC051767 BC036724 BC063042	17243	+	AF004224 TSC_hg19_v1_chr19_-_45996506 NM_206901	42467	-	TSC_hg19_v1_chr19_-_46000271 AF004222 BC014244 BC073874 AK291967 NM_005619 NM_206900	46221	-	NM_001166049|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##NM_001983|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AF433652|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AF001925|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##M13194|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##M28650|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##BC008930|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AB069681|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AK314884|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##EU178109|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178110|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178111|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178112|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178113|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178114|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178115|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178116|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##L49169|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##NM_001114171|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##NM_006732|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##AK225070|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##BC036724|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##BC063042|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##AF004224|RTN2|6253|reticulon 2##NM_206901|RTN2|6253|reticulon 2##AF004222|RTN2|6253|reticulon 2##BC014244|RTN2|6253|reticulon 2##BC073874|RTN2|6253|reticulon 2##AK291967|RTN2|6253|reticulon 2##NM_005619|RTN2|6253|reticulon 2##NM_206900|RTN2|6253|reticulon 2	0.998968	0.0	denovo_WM_7:11:0.310	denovo_WM_7:12:0.310	denovo_WM_7:13:0.310
chr17	1283295	1283435	reg1001041.p1	12.143	+	TSC_hg19_v1_chr17_-_1248347 L13388	-35009	-	AB090231 NM_172367 BC142615	-100401	+	NM_001164405	-109508	+	TSC_hg19_v1_chr17_-_1303504 BT007161 CU674076 EU176525 U28936 AB590347 BC000179 AX775995 U43399 U43430 U54778 U20972 BC001440 AY883089 AK295260 AK295997 AK296050 AK296555 AK128785 AK316185 AK316201	20104	-	TSC_hg19_v1_chr17_-_1303556 NM_006761	20188	-	BT007277 DQ891147 DQ894327 AB528363 TSC_hg19_v1_chr17_-_1359527 D10656 BC001718 BC009837 AK291060 BC008506 NM_005206 NM_016823	76127	-	L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##BT007161|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##EU176525|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U28936|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BC000179|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U43399|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U43430|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U54778|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U20972|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BC001440|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AY883089|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK295260|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK295997|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK296050|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK296555|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK128785|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK316185|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK316201|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##NM_006761|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BT007277|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##DQ891147|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##DQ894327|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##D10656|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##BC001718|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##BC009837|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##AK291060|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##BC008506|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##NM_005206|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##NM_016823|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)	0.999414	0.0	
chr7	5603384	5603481	reg1000605.p1	12.143	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-33223	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-34186	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-34591	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	29006	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	29078	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	217790	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.0	0.963887	CTCF.p2:-50:0.964
chr17	9458229	9458340	reg1001227.p1	12.142	+	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	-533317	+	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	-589303	-	AY725853 AF128881 NM_014308	-642468	-	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	20847	-	TSC_hg19_v1_chr17_-_9479156 BC009713 AF062077 AF115323 NM_004853	20922	-	NM_001080556 NM_145054 AK074435 AB065281 BC025392 AK094847 AK315679 CU692990	21693	+	NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8##BC009713|STX8|9482|syntaxin 8##AF062077|STX8|9482|syntaxin 8##AF115323|STX8|9482|syntaxin 8##NM_004853|STX8|9482|syntaxin 8##NM_001080556|WDR16|146845|WD repeat domain 16##NM_145054|WDR16|146845|WD repeat domain 16##AK074435|WDR16|146845|WD repeat domain 16##AB065281|WDR16|146845|WD repeat domain 16##BC025392|WDR16|146845|WD repeat domain 16##AK094847|WDR16|146845|WD repeat domain 16##AK315679|WDR16|146845|WD repeat domain 16	0.999494	0.0	
chr2	99065068	99065248	reg1001093.p1	12.140	+	TSC_hg19_v1_chr2_+_99061320 AK307823 BC028361 NM_001134224 NM_001134225 NM_001566 NM_004027 U26398 U96919	-3800	+	DQ067461 TSC_hg19_v1_chr2_+_98962901 DQ426864 DQ067459 AK308149	-102253	+	DQ426863 NM_001079878 NM_001298 DQ067460	-102525	+	HQ257887 TSC_hg19_v1_chr2_-_99224955 BC047722 NM_001008215 AK131034	159784	-	AL080115 BC025992 NM_014044 TSC_hg19_v1_chr2_+_99225051 BC091481	159892	+	TSC_hg19_v1_chr2_+_99225075 BC039078 AY017215 AK222599	159912	+	AK307823|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##BC028361|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001134224|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001134225|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001566|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_004027|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##U26398|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##U96919|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##DQ067461|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067459|CNGA3|1261|cyclic nucleotide gated channel alpha 3##AK308149|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ426863|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001079878|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001298|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067460|CNGA3|1261|cyclic nucleotide gated channel alpha 3##HQ257887|COA5|493753|cytochrome C oxidase assembly factor 5##BC047722|COA5|493753|cytochrome C oxidase assembly factor 5##NM_001008215|COA5|493753|cytochrome C oxidase assembly factor 5##AK131034|COA5|493753|cytochrome C oxidase assembly factor 5##AL080115|UNC50|25972|unc-50 homolog (C. elegans)##BC025992|UNC50|25972|unc-50 homolog (C. elegans)##NM_014044|UNC50|25972|unc-50 homolog (C. elegans)##BC091481|UNC50|25972|unc-50 homolog (C. elegans)##BC039078|UNC50|25972|unc-50 homolog (C. elegans)##AY017215|UNC50|25972|unc-50 homolog (C. elegans)##AK222599|UNC50|25972|unc-50 homolog (C. elegans)	0.993181	0.0	
chr9	114689033	114689172	reg1001147.p1	12.139	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-29635	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-29988	+	AL833535 NM_173521	-143327	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	248418	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	406185	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	406747	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	1.995624	0.0	denovo_WM_7:46:0.919	denovo_WM_7:61:0.950
chr15	31296585	31296717	reg1000828.p1	12.138	+	AK000320 AB528758 AM392869 TSC_hg19_v1_chr15_-_31283808 BC094750 BC063296 NM_017762	-12884	-	CR936734 CR936727 TSC_hg19_v1_chr15_+_31196114 AB023235	-100534	+	BC047882 NM_001146095 NM_001146094 NM_001146096 NM_014967 TSC_hg19_v1_chr15_+_31196088 BX647391 AK290987	-100577	+	AF071787 BC033627 BC005892 BC017849 HM135790 BC058286 BC070356 NM_001252024 NM_001252030 NM_002420	97266	-	GQ502181 HM135791 NM_001252020	156777	-	NM_001243538	226398	-	AK000320|MTMR10|54893|myotubularin related protein 10##AM392869|MTMR10|54893|myotubularin related protein 10##BC094750|MTMR10|54893|myotubularin related protein 10##BC063296|MTMR10|54893|myotubularin related protein 10##NM_017762|MTMR10|54893|myotubularin related protein 10##CR936734|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936727|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AB023235|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BC047882|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146095|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146094|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146096|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_014967|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BX647391|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK290987|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AF071787|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC033627|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC005892|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC017849|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135790|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC058286|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC070356|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252024|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252030|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_002420|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001243538|LOC283710|283710|uncharacterized LOC283710	0.057312	0.0	
chr6	82707219	82707355	reg1001343.p1	12.134	+	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	-244876	-	AY740520 FJ211061 CU674334 CU675631 TSC_hg19_v1_chr6_-_82461975	-245366	-	TSC_hg19_v1_chr6_+_80816397 AK289977 BC040139 M55575 AB529112 BT020063 X52446	-1890850	+	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	250126	-	TSC_hg19_v1_chr6_-_82957441 NM_015525 DQ005633 DQ005634	250181	-	AK291170 NM_006670	365635	+	AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##AY740520|FAM46A|55603|family with sequence similarity 46, member A##AK289977|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC040139|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##M55575|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BT020063|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##X52446|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##NM_015525|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##DQ005633|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##DQ005634|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein	0.011774	0.0	
chr3	150353426	150353567	reg1000843.p1	12.132	+	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	-32341	+	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	-32520	-	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-88910	+	AK093375 AX748085 BC036239 BC029577 NM_152394	68233	-	TSC_hg19_v1_chr3_-_150480902 AK223565	127403	-	TSC_hg19_v1_chr3_-_150480936 BC013082	127434	-	NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A##AK223565|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##BC013082|SIAH2|6478|seven in absentia homolog 2 (Drosophila)	1.092255	0.0	denovo_WM_7:36:0.310	denovo_WM_7:37:0.310	denovo_WM_7:38:0.310
chr19	12992438	12992618	reg1001062.p1	12.131	+	AK075449 TSC_hg19_v1_chr19_-_12992251 AF047016 AB004574 AK297493 AF045937 AK315358 BC065209 AF060222 AK311145 NM_001375	-237	-	FJ752529 BT007047 BC010419 TSC_hg19_v1_chr19_-_12992222	-341	-	NM_014975 TSC_hg19_v1_chr19_+_12949305 AB023190 AK297553 AB384551	-43207	+	AB463820 BC033580 BC040000 U65404 NM_006563	5458	-	TSC_hg19_v1_chr19_+_13001973 AK098370 AK290407 AK298772 NM_000159 NM_013976 AK296446 BC002579 AK300841 AK309892 U69141 CU678052 BT006706 S77773	9536	+	TSC_hg19_v1_chr19_-_13030085 AK302373 NM_001105578	37556	-	AK075449|DNASE2|1777|deoxyribonuclease II, lysosomal##AF047016|DNASE2|1777|deoxyribonuclease II, lysosomal##AB004574|DNASE2|1777|deoxyribonuclease II, lysosomal##AK297493|DNASE2|1777|deoxyribonuclease II, lysosomal##AF045937|DNASE2|1777|deoxyribonuclease II, lysosomal##AK315358|DNASE2|1777|deoxyribonuclease II, lysosomal##BC065209|DNASE2|1777|deoxyribonuclease II, lysosomal##AF060222|DNASE2|1777|deoxyribonuclease II, lysosomal##AK311145|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_001375|DNASE2|1777|deoxyribonuclease II, lysosomal##FJ752529|DNASE2|1777|deoxyribonuclease II, lysosomal##BT007047|DNASE2|1777|deoxyribonuclease II, lysosomal##BC010419|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_014975|MAST1|22983|microtubule associated serine/threonine kinase 1##AB023190|MAST1|22983|microtubule associated serine/threonine kinase 1##AK297553|MAST1|22983|microtubule associated serine/threonine kinase 1##BC033580|KLF1|10661|Kruppel-like factor 1 (erythroid)##BC040000|KLF1|10661|Kruppel-like factor 1 (erythroid)##U65404|KLF1|10661|Kruppel-like factor 1 (erythroid)##NM_006563|KLF1|10661|Kruppel-like factor 1 (erythroid)##AK098370|GCDH|2639|glutaryl-CoA dehydrogenase##AK290407|GCDH|2639|glutaryl-CoA dehydrogenase##AK298772|GCDH|2639|glutaryl-CoA dehydrogenase##NM_000159|GCDH|2639|glutaryl-CoA dehydrogenase##NM_013976|GCDH|2639|glutaryl-CoA dehydrogenase##AK296446|GCDH|2639|glutaryl-CoA dehydrogenase##BC002579|GCDH|2639|glutaryl-CoA dehydrogenase##AK300841|GCDH|2639|glutaryl-CoA dehydrogenase##AK309892|GCDH|2639|glutaryl-CoA dehydrogenase##U69141|GCDH|2639|glutaryl-CoA dehydrogenase##BT006706|GCDH|2639|glutaryl-CoA dehydrogenase##S77773|GCDH|2639|glutaryl-CoA dehydrogenase##AK302373|SYCE2|256126|synaptonemal complex central element protein 2##NM_001105578|SYCE2|256126|synaptonemal complex central element protein 2	2.026278	0.0	denovo_WM_7:76:0.539	denovo_WM_7:77:0.270	denovo_WM_7:91:0.329	denovo_WM_7:92:0.599
chr9	117111387	117111530	reg1000897.p1	12.123	+	BC042202 TSC_hg19_v1_chr9_-_117111294	-169	-	NM_000608 AK312226 BC015964 BC056239 AK303760 CR456930 CU677539	-19332	+	NM_000607 X02544 AK316207 AK312035 BC026238 BC007032 BC104818 BC104820 BC143313 BC143314 M13692 AB463987 BT019790 CU693168	-26101	+	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	38832	-	AY703040 BC055285 NM_030767	45226	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	49293	-	BC042202|AKNA|80709|AT-hook transcription factor##NM_000608|ORM2|5005|orosomucoid 2##AK312226|ORM2|5005|orosomucoid 2##BC015964|ORM2|5005|orosomucoid 2##BC056239|ORM2|5005|orosomucoid 2##AK303760|ORM2|5005|orosomucoid 2##CR456930|ORM2|5005|orosomucoid 2##NM_000607|ORM1|5004|orosomucoid 1##X02544|ORM1|5004|orosomucoid 1##AK316207|ORM1|5004|orosomucoid 1##AK312035|ORM1|5004|orosomucoid 1##BC026238|ORM1|5004|orosomucoid 1##BC007032|ORM1|5004|orosomucoid 1##BC104818|ORM1|5004|orosomucoid 1##BC104820|ORM1|5004|orosomucoid 1##BC143313|ORM1|5004|orosomucoid 1##BC143314|ORM1|5004|orosomucoid 1##M13692|ORM1|5004|orosomucoid 1##BT019790|ORM1|5004|orosomucoid 1##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor	0.0	0.0	
chr12	49752594	49752729	reg1001231.p1	12.118	+	BC033236 NM_024902	-11621	+	TSC_hg19_v1_chr12_+_49740718 AK055747	-11958	+	BC110812 AF466366 NM_001008223	-21698	-	TSC_hg19_v1_chr12_+_49760679 AK095582 NM_023071	8028	+	TSC_hg19_v1_chr12_+_49761253 BC017767 AL833614 BC048299 AK292334 AK023202 BX648916 BC032441	8733	+	TSC_hg19_v1_chr12_+_49932842 AB033108 NM_012284 BC144254 BC150602 AB022696 AB384589	180359	+	BC033236|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##NM_024902|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##AK055747|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##BC110812|C1QL4|338761|complement component 1, q subcomponent-like 4##AF466366|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001008223|C1QL4|338761|complement component 1, q subcomponent-like 4##AK095582|SPATS2|65244|spermatogenesis associated, serine-rich 2##NM_023071|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC017767|SPATS2|65244|spermatogenesis associated, serine-rich 2##AL833614|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC048299|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK292334|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK023202|SPATS2|65244|spermatogenesis associated, serine-rich 2##BX648916|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC032441|SPATS2|65244|spermatogenesis associated, serine-rich 2##AB033108|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##NM_012284|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##BC144254|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##BC150602|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##AB022696|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3	0.0	0.588675	CTCF.p2:-42:0.589
chr2	130915794	130915948	reg1001031.p1	12.118	+	CU688330 AK297246 AK057609 NM_207310 BC067771 AK302804	-13260	-	EF523384 NM_001099771 TSC_hg19_v1_chr2_-_130886919	-29013	-	NM_032144 AL136727	-178636	+	TSC_hg19_v1_chr2_-_130929945 BC040941	14130	-	TSC_hg19_v1_chr2_-_130939163 BC064947 AK000304 AK303519 AK303427 AK301576 AK056501 AK298609 EU367941 AK299185 AK297257 NM_001171083 NM_017751 NM_017951	23366	-	NM_025029	23629	+	AK297246|CCDC74B|91409|coiled-coil domain containing 74B##AK057609|CCDC74B|91409|coiled-coil domain containing 74B##NM_207310|CCDC74B|91409|coiled-coil domain containing 74B##BC067771|CCDC74B|91409|coiled-coil domain containing 74B##AK302804|CCDC74B|91409|coiled-coil domain containing 74B##EF523384|POTEF|728378|POTE ankyrin domain family, member F##NM_001099771|POTEF|728378|POTE ankyrin domain family, member F##NM_032144|RAB6C|84084|RAB6C, member RAS oncogene family##AL136727|RAB6C|84084|RAB6C, member RAS oncogene family##BC040941|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##BC064947|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK000304|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK303519|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK303427|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK301576|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK056501|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK298609|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##EU367941|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK299185|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##AK297257|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##NM_001171083|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##NM_017751|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##NM_017951|SMPD4|55627|sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3)##NM_025029|MZT2B|80097|mitotic spindle organizing protein 2B	0.992166	0.0	denovo_WM_7:30:0.686
chr3	98282886	98283034	reg1000906.p2	12.113	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-32151	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-41094	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-41195	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	29459	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	168285	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	168627	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	1.921248	0.0	denovo_WM_7:29:0.399	denovo_WM_7:31:0.394	denovo_WM_7:44:0.474	denovo_WM_7:46:0.400
chr8	141607145	141607278	reg1001029.p1	12.113	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-85648	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-85819	+	AK128755 NM_031466	-138534	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	38413	-	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	404045	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	531526	+	AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3	0.665128	0.0	denovo_WM_7:-1:0.548
chr7	99793758	99793911	reg1001056.p1	12.112	+	TSC_hg19_v1_chr7_+_99775540 NM_012447 AK292394 BC146806 AK302693 BC047490 BC028684 AL833816 BC140932	-18271	+	AJ007798 TSC_hg19_v1_chr7_+_99775380	-18470	+	AB587513 AM392909 CU693354 DQ893325 DQ896641 AL834418 TSC_hg19_v1_chr7_-_99774981 AB209144 AK096281 BC027972 NM_152742 AY093588	-18907	-	NM_024070	23036	+	BC065200 AK290510 TSC_hg19_v1_chr7_-_99869856 BC044886 BC090867 BC033723 BC053367 NM_178831	75996	-	BC056606 NM_001004351	111490	+	NM_012447|STAG3|10734|stromal antigen 3##AK292394|STAG3|10734|stromal antigen 3##BC146806|STAG3|10734|stromal antigen 3##AK302693|STAG3|10734|stromal antigen 3##BC047490|STAG3|10734|stromal antigen 3##BC028684|STAG3|10734|stromal antigen 3##AL833816|STAG3|10734|stromal antigen 3##BC140932|STAG3|10734|stromal antigen 3##AJ007798|STAG3|10734|stromal antigen 3##AM392909|GPC2|221914|glypican 2##DQ893325|GPC2|221914|glypican 2##DQ896641|GPC2|221914|glypican 2##AL834418|GPC2|221914|glypican 2##AK096281|GPC2|221914|glypican 2##BC027972|GPC2|221914|glypican 2##NM_152742|GPC2|221914|glypican 2##AY093588|GPC2|221914|glypican 2##NM_024070|PVRIG|79037|poliovirus receptor related immunoglobulin domain containing##BC065200|GATS|352954|GATS, stromal antigen 3 opposite strand##AK290510|GATS|352954|GATS, stromal antigen 3 opposite strand##BC044886|GATS|352954|GATS, stromal antigen 3 opposite strand##BC090867|GATS|352954|GATS, stromal antigen 3 opposite strand##BC033723|GATS|352954|GATS, stromal antigen 3 opposite strand##BC053367|GATS|352954|GATS, stromal antigen 3 opposite strand##NM_178831|GATS|352954|GATS, stromal antigen 3 opposite strand##BC056606|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##NM_001004351|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)	1.21173	0.0	denovo_WM_7:-62:0.499
chr11	57434969	57435149	reg1000004.p3	12.111	+	NM_001142597 NM_006831 TSC_hg19_v1_chr11_+_57425244 AK313007 AK300232 BC000446	-9829	+	BC029228 BC104781 BC112119 BC064995 AB098738 AK054775 AK124577 NM_145008	-17728	-	TSC_hg19_v1_chr11_-_57414981 BC111012	-20046	-	TSC_hg19_v1_chr11_+_57435327 AY894889	312	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	416	+	BC026967 TSC_hg19_v1_chr11_+_57435567	509	+	NM_001142597|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##NM_006831|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK313007|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK300232|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC000446|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC029228|YPEL4|219539|yippee-like 4 (Drosophila)##BC104781|YPEL4|219539|yippee-like 4 (Drosophila)##BC112119|YPEL4|219539|yippee-like 4 (Drosophila)##BC064995|YPEL4|219539|yippee-like 4 (Drosophila)##AB098738|YPEL4|219539|yippee-like 4 (Drosophila)##AK054775|YPEL4|219539|yippee-like 4 (Drosophila)##AK124577|YPEL4|219539|yippee-like 4 (Drosophila)##NM_145008|YPEL4|219539|yippee-like 4 (Drosophila)##BC111012|YPEL4|219539|yippee-like 4 (Drosophila)##AY894889|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5##BC026967|ZDHHC5|25921|zinc finger, DHHC-type containing 5	0.0	0.0	
chr15	65998056	65998174	reg1000962.p1	12.111	+	AF062922 NM_004727	-83846	+	BC012630 TSC_hg19_v1_chr15_+_65903706 AB014602 BC029407 AK304006	-94460	+	AL136662 TSC_hg19_v1_chr15_-_65903462 BC007991 AK296134 AK027475 AK301033 AK301742 AK310857 AK301222 AK293207 NM_001207058 NM_001207059	-94599	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	86358	-	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	86478	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	163732	+	AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC012630|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AB014602|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC029407|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK304006|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AL136662|C15orf44|81556|chromosome 15 open reading frame 44##BC007991|C15orf44|81556|chromosome 15 open reading frame 44##AK296134|C15orf44|81556|chromosome 15 open reading frame 44##AK027475|C15orf44|81556|chromosome 15 open reading frame 44##AK301033|C15orf44|81556|chromosome 15 open reading frame 44##AK301742|C15orf44|81556|chromosome 15 open reading frame 44##AK310857|C15orf44|81556|chromosome 15 open reading frame 44##AK301222|C15orf44|81556|chromosome 15 open reading frame 44##AK293207|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207058|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207059|C15orf44|81556|chromosome 15 open reading frame 44##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family	0.458649	0.0	denovo_WM_7:10:0.265
chr2	47980136	47980263	reg1001011.p2	12.111	+	TSC_hg19_v1_chr2_-_47918421 D28393	-61780	-	AF287302 NM_022055 BC047749	-182716	-	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	-349882	+	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	30097	+	AK304140 AK315108 NM_025133	135652	-	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	152594	-	D28393|RPL18A|6142|ribosomal protein L18a##AF287302|KCNK12|56660|potassium channel, subfamily K, member 12##NM_022055|KCNK12|56660|potassium channel, subfamily K, member 12##BC047749|KCNK12|56660|potassium channel, subfamily K, member 12##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11	1.949976	0.0	denovo_WM_7:-32:0.327	denovo_WM_7:-33:0.304	denovo_WM_7:-47:0.225	denovo_WM_7:-48:0.528
chrUn_gl000220	100062	100242	reg1013406.p2	12.109	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.994219	0.0	
chr11	60214184	60214303	reg1000907.p2	12.107	+	BC029884 NM_023945 AF237907 AF321127 AB013103	-17165	+	NM_001079692 NM_032597	-50757	+	TSC_hg19_v1_chr11_+_60146063 BC020673 AF237916 AF201951 AF350501	-68184	+	NM_021950 NM_152866 AK225630 AK292168 AK300025 AK310118 BC002807 X07203 X12530	9070	+	AK000224 AK309275 NM_001164470 NM_017716 BC029793	46013	+	AY324188 AY324189 AY324190 NM_001012417 NM_001100909 BC140799 BC171746	68705	+	BC029884|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##NM_023945|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##AF237907|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##AF321127|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##AB013103|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##NM_001079692|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14##NM_032597|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14##BC020673|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF237916|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF201951|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF350501|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_021950|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##NM_152866|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK225630|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK292168|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK300025|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK310118|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##BC002807|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X07203|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X12530|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK000224|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_001164470|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_017716|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##BC029793|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##AY324188|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324189|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324190|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001012417|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001100909|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC140799|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC171746|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13	1.212365	0.0	denovo_WM_7:-28:0.822
chr2	20643088	20643232	reg1000555.p2	12.106	+	TSC_hg19_v1_chr2_-_20550436 AK304198 AK093847 AX748335	-92741	-	D87078 AF315591 NM_015317 BC112046 BC112048 BC143550 BC143552	-116027	-	AF272350 TSC_hg19_v1_chr2_-_20512079	-131111	-	AK310813 AK312487 AK124398 AK297495 AK309991 BC066954 NM_004040	3672	+	TSC_hg19_v1_chr2_-_20850859 AB527583 CU691206 CU693338 BC057389 BC038847 BC050636 BC027947 AK024311 AK314383 NM_022460	207688	-	AF522369 NM_182828	223263	+	AK304198|PUM2|23369|pumilio homolog 2 (Drosophila)##AK093847|PUM2|23369|pumilio homolog 2 (Drosophila)##D87078|PUM2|23369|pumilio homolog 2 (Drosophila)##AF315591|PUM2|23369|pumilio homolog 2 (Drosophila)##NM_015317|PUM2|23369|pumilio homolog 2 (Drosophila)##BC112046|PUM2|23369|pumilio homolog 2 (Drosophila)##BC112048|PUM2|23369|pumilio homolog 2 (Drosophila)##BC143550|PUM2|23369|pumilio homolog 2 (Drosophila)##BC143552|PUM2|23369|pumilio homolog 2 (Drosophila)##AF272350|PUM2|23369|pumilio homolog 2 (Drosophila)##AK312487|RHOB|388|ras homolog gene family, member B##AK124398|RHOB|388|ras homolog gene family, member B##BC066954|RHOB|388|ras homolog gene family, member B##NM_004040|RHOB|388|ras homolog gene family, member B##BC057389|HS1BP3|64342|HCLS1 binding protein 3##BC038847|HS1BP3|64342|HCLS1 binding protein 3##BC050636|HS1BP3|64342|HCLS1 binding protein 3##BC027947|HS1BP3|64342|HCLS1 binding protein 3##AK024311|HS1BP3|64342|HCLS1 binding protein 3##AK314383|HS1BP3|64342|HCLS1 binding protein 3##NM_022460|HS1BP3|64342|HCLS1 binding protein 3##AF522369|GDF7|151449|growth differentiation factor 7##NM_182828|GDF7|151449|growth differentiation factor 7	1.350949	0.982871	CTCF.p2:0:0.983	denovo_WM_7:-36:0.399	denovo_WM_7:-37:0.462	denovo_WM_7:-54:0.300
chr2	38953273	38953368	reg1000831.p2	12.105	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-60065	+	NM_138801 TSC_hg19_v1_chr2_+_38893054	-60268	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-123179	-	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	25196	-	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	52035	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	149708	-	BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1.992243	0.899404	CTCF.p2:14:0.899	denovo_WM_7:41:0.686	denovo_WM_7:58:0.753
chr2	54787615	54787795	reg1000990.p1	12.105	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-2140	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-103338	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-104093	+	NM_001039753	164443	+	TSC_hg19_v1_chr2_-_55199899 BC131571	412203	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	449667	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	0.0	0.0	
chr7	74071731	74071873	reg1000048.p1	12.104	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-203367	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-203494	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-203638	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	219	+	TSC_hg19_v1_chr7_+_74072046 BC070484	242	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	320	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.0	0.0	
chr2	238907188	238907337	reg1000923.p1	12.103	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	-31559	+	TSC_hg19_v1_chr2_+_238875673 AK290063	-31582	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	-31638	+	AB209458 NM_016510 TSC_hg19_v1_chr2_+_238969639	62339	+	TSC_hg19_v1_chr2_+_238969669 AK301009 BC007891 AF175767 AK298409 DQ893234 DQ896564 CU675851	62418	+	TSC_hg19_v1_chr2_+_238969747 BC000586 AK293283	62505	+	BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AB209458|SCLY|51540|selenocysteine lyase##NM_016510|SCLY|51540|selenocysteine lyase##AK301009|SCLY|51540|selenocysteine lyase##BC007891|SCLY|51540|selenocysteine lyase##AF175767|SCLY|51540|selenocysteine lyase##AK298409|SCLY|51540|selenocysteine lyase##DQ893234|SCLY|51540|selenocysteine lyase##DQ896564|SCLY|51540|selenocysteine lyase##BC000586|SCLY|51540|selenocysteine lyase##AK293283|SCLY|51540|selenocysteine lyase	0.99974	0.0	denovo_WM_7:0:0.425	denovo_WM_7:1:0.425
chr5	133983686	133983849	reg1001094.p2	12.103	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	-15270	-	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-121962	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-122404	+	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	664	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	90543	+	NM_014829 TSC_hg19_v1_chr5_+_134094470 AK126011 AK291788 BC105598 AF106680 AB018344 BC012304 CU680282	110776	+	BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand##NM_014829|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK126011|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK291788|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC105598|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AF106680|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AB018344|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC012304|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.984713	0.0	denovo_WM_7:-2:0.556	denovo_WM_7:-3:0.324
chr17	73293606	73293756	reg1000902.p1	12.102	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-8152	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-8209	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-26367	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	96096	-	AK091010 TSC_hg19_v1_chr17_-_73401721	107963	-	TSC_hg19_v1_chr17_-_73401738 BC000631	108053	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	1.20877	0.0	denovo_WM_7:17:0.216	denovo_WM_7:20:0.363
chr3	72034050	72034230	reg1001010.p1	12.094	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-199869	-	AK313656 NM_173359	-230217	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-230618	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	863408	-	BC017274 TSC_hg19_v1_chr3_-_72897575	863435	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	863452	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	2.019934	0.0	
chr4	174291633	174291813	reg1000094.p2	12.094	+	BC001063 BC100019 BC021054 TSC_hg19_v1_chr4_-_174255505 BC000903 AK311864 NM_001130688 NM_002129	-36194	-	Z17240 BT019782 BT019783 AB463732 DQ892288 DQ895487 NM_001130689 TSC_hg19_v1_chr4_-_174255014	-36848	-	BC040577 TSC_hg19_v1_chr4_-_174090813	-200916	-	TSC_hg19_v1_chr4_+_174292088 NM_003864 AF055993	340	+	TSC_hg19_v1_chr4_+_174292104 BC016757	385	+	AJ224677 NM_007281	28893	-	BC001063|HMGB2|3148|high mobility group box 2##BC100019|HMGB2|3148|high mobility group box 2##BC000903|HMGB2|3148|high mobility group box 2##AK311864|HMGB2|3148|high mobility group box 2##NM_001130688|HMGB2|3148|high mobility group box 2##NM_002129|HMGB2|3148|high mobility group box 2##Z17240|HMGB2|3148|high mobility group box 2##BT019782|HMGB2|3148|high mobility group box 2##BT019783|HMGB2|3148|high mobility group box 2##DQ892288|HMGB2|3148|high mobility group box 2##DQ895487|HMGB2|3148|high mobility group box 2##NM_001130689|HMGB2|3148|high mobility group box 2##NM_003864|SAP30|8819|Sin3A-associated protein, 30kDa##AF055993|SAP30|8819|Sin3A-associated protein, 30kDa##BC016757|SAP30|8819|Sin3A-associated protein, 30kDa##AJ224677|SCRG1|11341|stimulator of chondrogenesis 1##NM_007281|SCRG1|11341|stimulator of chondrogenesis 1	0.0	0.0	
chr6	135424156	135424303	reg1001112.p1	12.093	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-48235	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-48341	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-152997	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	78219	+	TSC_hg19_v1_chr6_+_135502507 BC064955	78266	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	78357	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.686595	0.0	denovo_WM_7:-7:0.255	denovo_WM_7:-8:0.432
chr11	34265699	34265855	reg1000972.p2	12.092	+	TSC_hg19_v1_chr11_+_34127208 AK294044 AL136882 AK001636 BC014440 BC020205	-138527	+	NM_001144030 NM_024662 TSC_hg19_v1_chr11_+_34127175 AK022241 AK225341 BC035558 AB051496	-138620	+	TSC_hg19_v1_chr11_+_34073956 EU176359 EU176467 EU176701	-191740	+	TSC_hg19_v1_chr11_-_34379556 AK291744 NM_145804	113778	-	TSC_hg19_v1_chr11_+_34460487 AK291585 NM_001752 BC110398 AK315350 X04076 BC112217 BC112219	194697	+	TSC_hg19_v1_chr11_+_34460533 AB587573 AY028632 HQ258304	194772	+	AK294044|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AL136882|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK001636|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC014440|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC020205|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_001144030|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_024662|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK022241|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK225341|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC035558|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AB051496|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##EU176359|CAPRIN1|4076|cell cycle associated protein 1##EU176467|CAPRIN1|4076|cell cycle associated protein 1##EU176701|CAPRIN1|4076|cell cycle associated protein 1##AK291744|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##NM_145804|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##AK291585|CAT|847|catalase##NM_001752|CAT|847|catalase##BC110398|CAT|847|catalase##AK315350|CAT|847|catalase##X04076|CAT|847|catalase##BC112217|CAT|847|catalase##BC112219|CAT|847|catalase##AY028632|CAT|847|catalase##HQ258304|CAT|847|catalase	0.981575	0.015189	denovo_WM_7:-16:0.897
chrX	146999979	147000142	reg1001163.p1	12.092	+	TSC_hg19_v1_chrX_+_146993685 CU691632	-6367	+	BC038998 TSC_hg19_v1_chrX_+_146993559	-6509	+	TSC_hg19_v1_chrX_+_146993468 BC086957 NM_001185075 NM_001185076 NM_001185081 NM_001185082 NM_002024 S65791 X69962 M67468	-6567	+	BC034320 NM_152578 AY211917 AK098602	62795	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	582128	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	800552	+	BC038998|FMR1|2332|fragile X mental retardation 1##BC086957|FMR1|2332|fragile X mental retardation 1##NM_001185075|FMR1|2332|fragile X mental retardation 1##NM_001185076|FMR1|2332|fragile X mental retardation 1##NM_001185081|FMR1|2332|fragile X mental retardation 1##NM_001185082|FMR1|2332|fragile X mental retardation 1##NM_002024|FMR1|2332|fragile X mental retardation 1##S65791|FMR1|2332|fragile X mental retardation 1##X69962|FMR1|2332|fragile X mental retardation 1##M67468|FMR1|2332|fragile X mental retardation 1##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2	0.999705	0.0	
chr11	128172570	128172742	reg1000908.p1	12.088	+	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1299351	+	TSC_hg19_v1_chr11_-_126870685 AY358743 NM_001161707 NM_032531	-1301931	-	AB058770 BC071838 TSC_hg19_v1_chr11_-_126870667	-1301996	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	219307	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	219478	-	BX640634 NM_001143820	284796	-	BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##AY358743|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_001161707|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_032531|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AB058770|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##BC071838|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	1.994825	0.0	denovo_WM_7:16:0.911	denovo_WM_7:32:0.236	denovo_WM_7:33:0.682
chr4	177262219	177262349	reg1001421.p1	12.085	+	TSC_hg19_v1_chr4_-_177241652 AK096223	-20653	-	TSC_hg19_v1_chr4_+_177241122 AK026302 AL136660 AY359044 BC043490 BC053883 BC047290 CU690386 EU831652 EU831735	-21116	+	TSC_hg19_v1_chr4_+_177241098 NM_021928	-21231	+	AK313879 BC035212 U58111 X94216 U43142 BC063685 NM_005429 TSC_hg19_v1_chr4_-_177713956	451526	-	TSC_hg19_v1_chr4_+_178231006 NM_018248	968709	+	TSC_hg19_v1_chr4_+_178231027 AK001720 BC025954 AK307692 AB079071	968776	+	AK026302|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AL136660|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AY359044|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC043490|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC053883|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC047290|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831652|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831735|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##NM_021928|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AK313879|VEGFC|7424|vascular endothelial growth factor C##BC035212|VEGFC|7424|vascular endothelial growth factor C##U58111|VEGFC|7424|vascular endothelial growth factor C##X94216|VEGFC|7424|vascular endothelial growth factor C##U43142|VEGFC|7424|vascular endothelial growth factor C##BC063685|VEGFC|7424|vascular endothelial growth factor C##NM_005429|VEGFC|7424|vascular endothelial growth factor C##NM_018248|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##AK001720|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##BC025954|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##AK307692|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##AB079071|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)	0.989636	0.974092	denovo_WM_7:-17:0.975	CTCF.p2:17:0.947
chr15	66649204	66649360	reg1000951.p2	12.083	+	AK000523 TSC_hg19_v1_chr15_-_66649024 AK299233 BC000870 NM_017858	-259	-	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	-63383	+	NM_133375 AK295392 BC022089	-63637	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	29880	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	29991	+	TSC_hg19_v1_chr15_+_66694219 AK294322	44935	+	AK000523|TIPIN|54962|TIMELESS interacting protein##AK299233|TIPIN|54962|TIMELESS interacting protein##BC000870|TIPIN|54962|TIMELESS interacting protein##NM_017858|TIPIN|54962|TIMELESS interacting protein##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1	0.999604	0.0	denovo_WM_7:-16:0.520	denovo_WM_7:-21:0.390
chr12	40011770	40011919	reg1000998.p2	12.082	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	-174845	-	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-712461	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-1301219	+	AK314254 NM_005164	1998	-	BC038754 NM_001031748 BC048120 AK097445	8151	+	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	487845	-	AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13	0.997625	0.0	denovo_WM_7:-9:0.789
chr2	64789385	64789536	reg1001375.p1	12.081	+	TSC_hg19_v1_chr2_+_64751580 AL833962	-37858	+	TSC_hg19_v1_chr2_+_64751481 NM_001002243 NM_017657 NM_203437 BC047529 AK000087 AK222821	-37976	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	-107812	+	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	91389	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	91587	-	TSC_hg19_v1_chr2_-_65090764 AK097952	301281	-	AL833962|AFTPH|54812|aftiphilin##NM_001002243|AFTPH|54812|aftiphilin##NM_017657|AFTPH|54812|aftiphilin##NM_203437|AFTPH|54812|aftiphilin##BC047529|AFTPH|54812|aftiphilin##AK000087|AFTPH|54812|aftiphilin##AK222821|AFTPH|54812|aftiphilin##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2	0.999644	0.05512	denovo_WM_7:20:0.425	denovo_WM_7:21:0.425
chr16	2370897	2371059	reg1001013.p1	12.078	+	U66675 TSC_hg19_v1_chr16_-_2336925	-34079	-	NM_080594 TSC_hg19_v1_chr16_-_2318415	-52558	-	TSC_hg19_v1_chr16_-_2318393 AK316132	-52586	-	AK310864 U78735 TSC_hg19_v1_chr16_-_2390699	19669	-	TSC_hg19_v1_chr16_-_2390730 BC151840	19744	-	TSC_hg19_v1_chr16_-_2390785 AB210044 NM_001089	19788	-	NM_080594|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK316132|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK310864|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##U78735|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##BC151840|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##AB210044|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##NM_001089|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3	0.999808	0.0	denovo_WM_7:16:0.230	denovo_WM_7:17:0.230	denovo_WM_7:18:0.230	denovo_WM_7:19:0.230
chr6	118151186	118151311	reg1001236.p1	12.077	+	TSC_hg19_v1_chr6_+_117996664 AK126335 BC013026	-154582	+	BC110325 TSC_hg19_v1_chr6_+_117996661 BC063794	-154587	+	TSC_hg19_v1_chr6_+_117996651 BC150654 BC150655 AK125119	-154601	+	BC028615 NM_001029858 BC114925	77442	+	NM_002667 M63603 AK311799 BC005269	718217	+	BC048977 BC052778 NM_001042475 NM_206921 BC036553	821788	-	AK126335|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC013026|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC110325|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC063794|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC150654|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC150655|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##AK125119|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC028615|SLC35F1|222553|solute carrier family 35, member F1##NM_001029858|SLC35F1|222553|solute carrier family 35, member F1##BC114925|SLC35F1|222553|solute carrier family 35, member F1##NM_002667|PLN|5350|phospholamban##M63603|PLN|5350|phospholamban##AK311799|PLN|5350|phospholamban##BC005269|PLN|5350|phospholamban##BC048977|CEP85L|387119|centrosomal protein 85kDa-like##BC052778|CEP85L|387119|centrosomal protein 85kDa-like##NM_001042475|CEP85L|387119|centrosomal protein 85kDa-like##NM_206921|CEP85L|387119|centrosomal protein 85kDa-like##BC036553|CEP85L|387119|centrosomal protein 85kDa-like	1.98751	0.0	denovo_WM_7:15:0.425	denovo_WM_7:16:0.411	denovo_WM_7:31:0.691
chr11	17526211	17526330	reg1001015.p1	12.071	+	TSC_hg19_v1_chr11_-_17498427 NM_000352	-27834	-	U63421 HM635782 TSC_hg19_v1_chr11_-_17498355 AK297560 AF087138 L78207 AB209084	-27927	-	BC040617 AK301550 NM_001166290 TSC_hg19_v1_chr11_-_17410958	-115360	-	CU677569 TSC_hg19_v1_chr11_-_17565964 AK290788 AK300936 AB018687 BC016057 AF039699 AF039700 AK225614 NM_005709 NM_153676	39647	-	NM_002478 AK314968 TSC_hg19_v1_chr11_+_17741117 BC000353 X56677 BC064493 AB463907 BT007157	214949	+	NM_001112741 NM_004976 AB529092	231249	+	NM_000352|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##U63421|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##HM635782|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AK297560|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AF087138|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##L78207|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AB209084|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##BC040617|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##AK301550|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_001166290|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##AK290788|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK300936|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AB018687|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##BC016057|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AF039699|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AF039700|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK225614|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_005709|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_153676|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_002478|MYOD1|4654|myogenic differentiation 1##AK314968|MYOD1|4654|myogenic differentiation 1##X56677|MYOD1|4654|myogenic differentiation 1##BC064493|MYOD1|4654|myogenic differentiation 1##BT007157|MYOD1|4654|myogenic differentiation 1##NM_001112741|KCNC1|3746|potassium voltage-gated channel, Shaw-related subfamily, member 1##NM_004976|KCNC1|3746|potassium voltage-gated channel, Shaw-related subfamily, member 1	0.984246	0.749791	denovo_WM_7:-10:0.801	CTCF.p2:36:0.750
chr17	57905341	57905493	reg1001108.p2	12.071	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-120344	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-120382	+	BC009758 TSC_hg19_v1_chr17_+_57785014 AK024969	-120401	+	TSC_hg19_v1_chr17_+_57915291 AK310806	9889	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	64774	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	65045	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##BC009758|VMP1|81671|vacuole membrane protein 1##AK024969|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	0.999661	0.0	denovo_WM_7:-22:0.425	denovo_WM_7:-23:0.425
chr4	74472300	74472449	reg1001146.p1	12.069	+	AK290556 NM_001133 BC109020 BC109021 L35486	-124904	+	NM_001134 V01514 AK297669 TSC_hg19_v1_chr4_+_74301937 AK297674 AK314817 BC027881 DQ890942 DQ894103 CU693306	-170419	+	X51365 X51363 X51364 TSC_hg19_v1_chr4_+_74286879	-185512	+	AY217664 BC058835 NM_177532 AY217665 CR749283 AK126346 NM_201431	13845	-	NM_000584 Y00787 AK131067 AK311874 M17017 M26383 BC013615 AF043337 AB590232 DQ890564 DQ893727 BT007067 CR542151 Z11686	133924	+	NM_002993 AK311981 U81234 BC013744 DQ891500 DQ894692 AB463491	229995	+	AK290556|AFM|173|afamin##NM_001133|AFM|173|afamin##BC109020|AFM|173|afamin##BC109021|AFM|173|afamin##L35486|AFM|173|afamin##NM_001134|AFP|174|alpha-fetoprotein##V01514|AFP|174|alpha-fetoprotein##AK297669|AFP|174|alpha-fetoprotein##AK297674|AFP|174|alpha-fetoprotein##AK314817|AFP|174|alpha-fetoprotein##BC027881|AFP|174|alpha-fetoprotein##DQ890942|AFP|174|alpha-fetoprotein##DQ894103|AFP|174|alpha-fetoprotein##X51365|ALB|213|albumin##X51363|ALB|213|albumin##X51364|ALB|213|albumin##AY217664|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##BC058835|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_177532|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AY217665|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##CR749283|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK126346|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_201431|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_000584|IL8|3576|interleukin 8##Y00787|IL8|3576|interleukin 8##AK131067|IL8|3576|interleukin 8##AK311874|IL8|3576|interleukin 8##M17017|IL8|3576|interleukin 8##M26383|IL8|3576|interleukin 8##BC013615|IL8|3576|interleukin 8##DQ890564|IL8|3576|interleukin 8##DQ893727|IL8|3576|interleukin 8##BT007067|IL8|3576|interleukin 8##CR542151|IL8|3576|interleukin 8##Z11686|IL8|3576|interleukin 8##NM_002993|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##AK311981|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##U81234|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##BC013744|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ891500|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ894692|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)	0.994053	0.0	denovo_WM_7:-9:0.459	denovo_WM_7:-10:0.459
chrX	115002089	115002269	reg1000025.p1	12.065	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-174311	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-205137	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-206573	+	BC003645 TSC_hg19_v1_chrX_-_115085443	83260	-	AK313927 NM_000686 X87723 U16957	299816	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	565588	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chrX	23774318	23774476	reg1001127.p1	12.064	+	TSC_hg19_v1_chrX_-_23761415 NM_001033583 NM_001037171	-12987	-	BX648512 AK000659 TSC_hg19_v1_chrX_-_23761394	-13006	-	AB528567 TSC_hg19_v1_chrX_-_23761366 BC136671 BC144360 BC144370 BC012573	-13079	-	NM_002970 TSC_hg19_v1_chrX_+_23801289 AK310078 BC008424 AK312162 AK310094 M77693 AL050290 BC002503 AK315888	26915	+	TSC_hg19_v1_chrX_+_23801432 M55580 AY841998 AB464243 AM392717 BT006825 CR450294	27052	+	TSC_hg19_v1_chrX_-_23855464 AK303908 D28399	81063	-	NM_001033583|ACOT9|23597|acyl-CoA thioesterase 9##NM_001037171|ACOT9|23597|acyl-CoA thioesterase 9##BX648512|ACOT9|23597|acyl-CoA thioesterase 9##AK000659|ACOT9|23597|acyl-CoA thioesterase 9##BC136671|ACOT9|23597|acyl-CoA thioesterase 9##BC144360|ACOT9|23597|acyl-CoA thioesterase 9##BC144370|ACOT9|23597|acyl-CoA thioesterase 9##BC012573|ACOT9|23597|acyl-CoA thioesterase 9##NM_002970|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK310078|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC008424|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK312162|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##M77693|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AL050290|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC002503|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK315888|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##M55580|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AY841998|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BT006825|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##CR450294|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK303908|RPL9|6133|ribosomal protein L9	0.995708	0.990085	denovo_WM_7:-24:0.456	denovo_WM_7:-25:0.456	CTCF.p2:34:0.990
chr1	212787850	212787979	reg1000855.p1	12.062	+	AK312998 TSC_hg19_v1_chr1_+_212782105 BC006322 L19871	-5807	+	NM_001040619 NM_001206484 NM_001206488 NM_001674 TSC_hg19_v1_chr1_+_212782102 AK294296	-5879	+	NM_001030287	-49239	+	NM_001206486 AB066566 AB078026 AB078027 AB528347 AY313926 AY313927 BT006996 CR450334 DQ892723 DQ895972 AB209032	493	+	AK301981 NM_153606 BC035007	9887	+	AB463432 HQ258061 TSC_hg19_v1_chr1_-_212873132	85206	-	AK312998|ATF3|467|activating transcription factor 3##BC006322|ATF3|467|activating transcription factor 3##L19871|ATF3|467|activating transcription factor 3##NM_001040619|ATF3|467|activating transcription factor 3##NM_001206484|ATF3|467|activating transcription factor 3##NM_001206488|ATF3|467|activating transcription factor 3##NM_001674|ATF3|467|activating transcription factor 3##AK294296|ATF3|467|activating transcription factor 3##NM_001030287|ATF3|467|activating transcription factor 3##NM_001206486|ATF3|467|activating transcription factor 3##AB066566|ATF3|467|activating transcription factor 3##AB078026|ATF3|467|activating transcription factor 3##AB078027|ATF3|467|activating transcription factor 3##AY313926|ATF3|467|activating transcription factor 3##AY313927|ATF3|467|activating transcription factor 3##BT006996|ATF3|467|activating transcription factor 3##CR450334|ATF3|467|activating transcription factor 3##DQ892723|ATF3|467|activating transcription factor 3##DQ895972|ATF3|467|activating transcription factor 3##AB209032|ATF3|467|activating transcription factor 3##AK301981|FAM71A|149647|family with sequence similarity 71, member A##NM_153606|FAM71A|149647|family with sequence similarity 71, member A##BC035007|FAM71A|149647|family with sequence similarity 71, member A##HQ258061|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3	0.977807	0.0	denovo_WM_7:25:0.913
chr2	149877876	149878007	reg1000684.p1	12.062	+	TSC_hg19_v1_chr2_+_149633176 AB384491	-244762	+	BC017298 TSC_hg19_v1_chr2_+_149632844	-245101	+	TSC_hg19_v1_chr2_+_149632795 NM_004522 BC002721 BC025961 AB011103	-245145	+	BC040176 NM_177964	17039	+	AK124733 NM_001195685	308557	+	NM_194317 TSC_hg19_v1_chr2_+_150187114 AY358623 AK309248	309161	+	BC017298|KIF5C|3800|kinesin family member 5C##NM_004522|KIF5C|3800|kinesin family member 5C##BC002721|KIF5C|3800|kinesin family member 5C##BC025961|KIF5C|3800|kinesin family member 5C##AB011103|KIF5C|3800|kinesin family member 5C##BC040176|LYPD6B|130576|LY6/PLAUR domain containing 6B##NM_177964|LYPD6B|130576|LY6/PLAUR domain containing 6B##AK124733|LYPD6|130574|LY6/PLAUR domain containing 6##NM_001195685|LYPD6|130574|LY6/PLAUR domain containing 6##NM_194317|LYPD6|130574|LY6/PLAUR domain containing 6##AY358623|LYPD6|130574|LY6/PLAUR domain containing 6##AK309248|LYPD6|130574|LY6/PLAUR domain containing 6	0.970379	0.0	denovo_WM_7:-18:0.315	denovo_WM_7:-19:0.349
chr6	28339789	28339924	reg1000841.p1	12.059	+	TSC_hg19_v1_chr6_+_28317723 AK091225 AX746861 NM_001242894 NM_001242895 NM_024493 AK122790 AK313532 BC006118	-22130	+	NM_001243241 NM_001243242 NM_001243244 NM_030899	-35705	-	AL833617 NM_001135216 NM_001243243 BC008490	-35939	-	TSC_hg19_v1_chr6_-_28367519 BC041661 AB007886 NM_001163391	27665	-	AK309235 AL833347 AK092117 AX747363 NM_001012455	71397	-	BC133691 BC148315 AY324826 NM_182701	143710	-	AK091225|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242894|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242895|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_024493|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK122790|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK313532|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##BC006118|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001243241|ZNF323|64288|zinc finger protein 323##NM_001243242|ZNF323|64288|zinc finger protein 323##NM_001243244|ZNF323|64288|zinc finger protein 323##NM_030899|ZNF323|64288|zinc finger protein 323##AL833617|ZNF323|64288|zinc finger protein 323##NM_001135216|ZNF323|64288|zinc finger protein 323##NM_001243243|ZNF323|64288|zinc finger protein 323##BC008490|ZNF323|64288|zinc finger protein 323##BC041661|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AB007886|ZSCAN12|9753|zinc finger and SCAN domain containing 12##NM_001163391|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AK309235|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AL833347|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AK092117|ZSCAN23|222696|zinc finger and SCAN domain containing 23##NM_001012455|ZSCAN23|222696|zinc finger and SCAN domain containing 23##BC133691|GPX6|257202|glutathione peroxidase 6 (olfactory)##BC148315|GPX6|257202|glutathione peroxidase 6 (olfactory)##AY324826|GPX6|257202|glutathione peroxidase 6 (olfactory)##NM_182701|GPX6|257202|glutathione peroxidase 6 (olfactory)	0.99076	0.0	denovo_WM_7:-21:0.491	denovo_WM_7:-22:0.286	denovo_WM_7:-23:0.214
chr11	65130084	65130227	reg1000775.p2	12.052	+	NM_145719	-7874	+	TSC_hg19_v1_chr11_+_65101347 BC014889 AK291944 U94585 AB463002 BT006718 DQ892397 DQ895612	-28804	+	NM_006268 TSC_hg19_v1_chr11_+_65101322 AK313408 AK300061 BX641135	-28871	+	BC036869 BX648573 NM_001077241 NM_182556	19969	-	NM_031904 TSC_hg19_v1_chr11_+_65154083 BC021094	23909	+	TSC_hg19_v1_chr11_+_65154127 AK074850 BC033851 AK056778 BC044658 AK291678 AK304363 BC051695	23956	+	NM_145719|TIGD3|220359|tigger transposable element derived 3##BC014889|DPF2|5977|D4, zinc and double PHD fingers family 2##AK291944|DPF2|5977|D4, zinc and double PHD fingers family 2##U94585|DPF2|5977|D4, zinc and double PHD fingers family 2##BT006718|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ892397|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ895612|DPF2|5977|D4, zinc and double PHD fingers family 2##NM_006268|DPF2|5977|D4, zinc and double PHD fingers family 2##AK313408|DPF2|5977|D4, zinc and double PHD fingers family 2##AK300061|DPF2|5977|D4, zinc and double PHD fingers family 2##BX641135|DPF2|5977|D4, zinc and double PHD fingers family 2##BC036869|SLC25A45|283130|solute carrier family 25, member 45##BX648573|SLC25A45|283130|solute carrier family 25, member 45##NM_001077241|SLC25A45|283130|solute carrier family 25, member 45##NM_182556|SLC25A45|283130|solute carrier family 25, member 45##NM_031904|FRMD8|83786|FERM domain containing 8##AK074850|FRMD8|83786|FERM domain containing 8##BC033851|FRMD8|83786|FERM domain containing 8##AK056778|FRMD8|83786|FERM domain containing 8##BC044658|FRMD8|83786|FERM domain containing 8##AK291678|FRMD8|83786|FERM domain containing 8##AK304363|FRMD8|83786|FERM domain containing 8##BC051695|FRMD8|83786|FERM domain containing 8	2.762664	0.0	denovo_WM_7:-4:0.884	denovo_WM_7:10:0.884	denovo_WM_7:77:0.350
chr19	16230509	16230636	reg1000655.p4	12.051	+	AK293676 TSC_hg19_v1_chr19_+_16222706 X56741 AF498943 BT007184 CR536583 CR542274 DQ892523 DQ895735 AB209767	-7850	+	TSC_hg19_v1_chr19_+_16222683 BC002977	-7956	+	TSC_hg19_v1_chr19_+_16222463 AK025165 NM_005370	-8098	+	TSC_hg19_v1_chr19_-_16243033 AY927516	12490	-	AY319652 NM_032855	14265	+	TSC_hg19_v1_chr19_-_16250705 AK095221	20132	-	AK293676|RAB8A|4218|RAB8A, member RAS oncogene family##X56741|RAB8A|4218|RAB8A, member RAS oncogene family##AF498943|RAB8A|4218|RAB8A, member RAS oncogene family##BT007184|RAB8A|4218|RAB8A, member RAS oncogene family##CR536583|RAB8A|4218|RAB8A, member RAS oncogene family##CR542274|RAB8A|4218|RAB8A, member RAS oncogene family##DQ892523|RAB8A|4218|RAB8A, member RAS oncogene family##DQ895735|RAB8A|4218|RAB8A, member RAS oncogene family##AB209767|RAB8A|4218|RAB8A, member RAS oncogene family##BC002977|RAB8A|4218|RAB8A, member RAS oncogene family##AK025165|RAB8A|4218|RAB8A, member RAS oncogene family##NM_005370|RAB8A|4218|RAB8A, member RAS oncogene family##AY319652|HSH2D|84941|hematopoietic SH2 domain containing##NM_032855|HSH2D|84941|hematopoietic SH2 domain containing	0.984154	0.0	denovo_WM_7:48:0.939
chr3	9684364	9684487	reg1000846.p1	12.051	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	-88962	-	TSC_hg19_v1_chr3_+_9476522 AB384632	-207909	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-244851	+	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	6717	+	TSC_hg19_v1_chr3_+_9691188 AK295891 BC050626 AK298846 AL713695	6764	+	TSC_hg19_v1_chr3_+_9691198 BC035690 BC001674 AB463135 AM393050 AM393309 EU832316 EU832401 CU690748 DQ630520	6807	+	BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AK092046|SETD5|55209|SET domain containing 5##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14##AK295891|MTMR14|64419|myotubularin related protein 14##BC050626|MTMR14|64419|myotubularin related protein 14##AK298846|MTMR14|64419|myotubularin related protein 14##AL713695|MTMR14|64419|myotubularin related protein 14##BC035690|MTMR14|64419|myotubularin related protein 14##BC001674|MTMR14|64419|myotubularin related protein 14##EU832316|MTMR14|64419|myotubularin related protein 14##EU832401|MTMR14|64419|myotubularin related protein 14##DQ630520|MTMR14|64419|myotubularin related protein 14	1.962258	0.0	denovo_WM_7:-29:0.952
chr11	5721759	5721903	reg1000991.p1	12.044	+	TSC_hg19_v1_chr11_+_5711025 AK308221 AK310098 AK311659 BC022281 AK298715 BC035582 AK290434 X82200 AK308796 AK301192	-10813	+	AK298934 NM_001199573 NM_006074 TSC_hg19_v1_chr11_+_5710861	-10985	+	TSC_hg19_v1_chr11_-_5706305 BC021258 BX647152 AK027593 NM_033034 NM_033092 NM_033093	-15568	-	AK122668 NM_001005180 BC137184 BC137185	35847	+	BC137035 BC137036 NM_001005175	54091	+	BC136979 BC136981 NM_001001922	78065	-	AK308221|TRIM22|10346|tripartite motif containing 22##AK310098|TRIM22|10346|tripartite motif containing 22##BC022281|TRIM22|10346|tripartite motif containing 22##AK298715|TRIM22|10346|tripartite motif containing 22##BC035582|TRIM22|10346|tripartite motif containing 22##AK290434|TRIM22|10346|tripartite motif containing 22##X82200|TRIM22|10346|tripartite motif containing 22##AK308796|TRIM22|10346|tripartite motif containing 22##AK301192|TRIM22|10346|tripartite motif containing 22##AK298934|TRIM22|10346|tripartite motif containing 22##NM_001199573|TRIM22|10346|tripartite motif containing 22##NM_006074|TRIM22|10346|tripartite motif containing 22##BC021258|TRIM5|85363|tripartite motif containing 5##BX647152|TRIM5|85363|tripartite motif containing 5##AK027593|TRIM5|85363|tripartite motif containing 5##NM_033034|TRIM5|85363|tripartite motif containing 5##NM_033092|TRIM5|85363|tripartite motif containing 5##NM_033093|TRIM5|85363|tripartite motif containing 5##AK122668|OR56B1|387748|olfactory receptor, family 56, subfamily B, member 1##NM_001005180|OR56B1|387748|olfactory receptor, family 56, subfamily B, member 1##BC137184|OR56B1|387748|olfactory receptor, family 56, subfamily B, member 1##BC137185|OR56B1|387748|olfactory receptor, family 56, subfamily B, member 1##BC137035|OR52N4|390072|olfactory receptor, family 52, subfamily N, member 4##BC137036|OR52N4|390072|olfactory receptor, family 52, subfamily N, member 4##NM_001005175|OR52N4|390072|olfactory receptor, family 52, subfamily N, member 4##BC136979|OR52N5|390075|olfactory receptor, family 52, subfamily N, member 5##BC136981|OR52N5|390075|olfactory receptor, family 52, subfamily N, member 5##NM_001001922|OR52N5|390075|olfactory receptor, family 52, subfamily N, member 5	1.970786	0.0	denovo_WM_7:43:0.701	denovo_WM_7:44:0.241
chr1	193039222	193039402	reg1000759.p1	12.032	+	BC036658 AY205314 AY205315 M25077 TSC_hg19_v1_chr1_+_193029273	-10088	+	NM_001042369 NM_001042370 NM_001173525 NM_004600	-10309	+	TSC_hg19_v1_chr1_+_193028764 AK314594 S57803	-10616	+	AF151891 BC028113 TSC_hg19_v1_chr1_-_193074545 AF132495 BC009669 AY038988 NM_197962	35238	-	NM_001243399 AF290514 NM_016066	35902	-	TSC_hg19_v1_chr1_+_193091115 NM_024529	51776	+	BC036658|TROVE2|6738|TROVE domain family, member 2##AY205314|TROVE2|6738|TROVE domain family, member 2##AY205315|TROVE2|6738|TROVE domain family, member 2##M25077|TROVE2|6738|TROVE domain family, member 2##NM_001042369|TROVE2|6738|TROVE domain family, member 2##NM_001042370|TROVE2|6738|TROVE domain family, member 2##NM_001173525|TROVE2|6738|TROVE domain family, member 2##NM_004600|TROVE2|6738|TROVE domain family, member 2##AK314594|TROVE2|6738|TROVE domain family, member 2##S57803|TROVE2|6738|TROVE domain family, member 2##AF151891|GLRX2|51022|glutaredoxin 2##BC028113|GLRX2|51022|glutaredoxin 2##AF132495|GLRX2|51022|glutaredoxin 2##BC009669|GLRX2|51022|glutaredoxin 2##AY038988|GLRX2|51022|glutaredoxin 2##NM_197962|GLRX2|51022|glutaredoxin 2##NM_001243399|GLRX2|51022|glutaredoxin 2##AF290514|GLRX2|51022|glutaredoxin 2##NM_016066|GLRX2|51022|glutaredoxin 2##NM_024529|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.998753	0.041622	denovo_WM_7:-25:0.314	denovo_WM_7:-26:0.314	denovo_WM_7:-27:0.314
chr4	104012868	104013002	reg1001234.p1	12.029	+	NM_178833	-14766	-	TSC_hg19_v1_chr4_-_103997929 AK172823	-15010	-	BC047447 TSC_hg19_v1_chr4_-_103997468 AK299888	-15462	-	AK128463 TSC_hg19_v1_chr4_-_104020987 AF164790 AK023323 AK290160 AK291335 AK300626 BC037277 BC095414 AY358841 BC001953 NM_020139	8065	-	AB527246 AB209996 TSC_hg19_v1_chr4_-_104119535 AK290362 NM_001813 Z15005	106585	-	BC095527 AY462099 BC121806 BC122551 M89473 NM_001059	627965	-	NM_178833|SLC9B2|133308|solute carrier family 9, subfamily B (cation proton antiporter 2), member 2##AK172823|SLC9B2|133308|solute carrier family 9, subfamily B (cation proton antiporter 2), member 2##BC047447|SLC9B2|133308|solute carrier family 9, subfamily B (cation proton antiporter 2), member 2##AK299888|SLC9B2|133308|solute carrier family 9, subfamily B (cation proton antiporter 2), member 2##AK128463|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AF164790|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AK023323|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AK290160|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AK291335|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AK300626|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##BC037277|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##BC095414|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AY358841|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##BC001953|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##NM_020139|BDH2|56898|3-hydroxybutyrate dehydrogenase, type 2##AB209996|CENPE|1062|centromere protein E, 312kDa##AK290362|CENPE|1062|centromere protein E, 312kDa##NM_001813|CENPE|1062|centromere protein E, 312kDa##Z15005|CENPE|1062|centromere protein E, 312kDa##BC095527|TACR3|6870|tachykinin receptor 3##AY462099|TACR3|6870|tachykinin receptor 3##BC121806|TACR3|6870|tachykinin receptor 3##BC122551|TACR3|6870|tachykinin receptor 3##M89473|TACR3|6870|tachykinin receptor 3##NM_001059|TACR3|6870|tachykinin receptor 3	0.72479	0.903113	denovo_WM_7:-23:0.379	CTCF.p2:46:0.903
chr7	148204289	148204428	reg1001452.p1	12.028	+	TSC_hg19_v1_chr7_+_148036552 CR933671	-167793	+	AF319045 AK315113 TSC_hg19_v1_chr7_+_145813941	-2390474	+	NM_014141	-2390906	+	BC021251 NM_145304	83298	+	TSC_hg19_v1_chr7_+_148395994 NM_003592 AK096163 AK296909	191582	+	TSC_hg19_v1_chr7_+_148396012 BX537409	191646	+	CR933671|CNTNAP2|26047|contactin associated protein-like 2##AF319045|CNTNAP2|26047|contactin associated protein-like 2##AK315113|CNTNAP2|26047|contactin associated protein-like 2##NM_014141|CNTNAP2|26047|contactin associated protein-like 2##BC021251|C7orf33|202865|chromosome 7 open reading frame 33##NM_145304|C7orf33|202865|chromosome 7 open reading frame 33##NM_003592|CUL1|8454|cullin 1##AK096163|CUL1|8454|cullin 1##AK296909|CUL1|8454|cullin 1##BX537409|CUL1|8454|cullin 1	0.960414	0.0	denovo_WM_7:48:0.274	denovo_WM_7:49:0.686
chr9	112161835	112162003	reg1001091.p1	12.022	+	TSC_hg19_v1_chr9_-_112083330 AB032179	-78629	-	TSC_hg19_v1_chr9_-_112083007 AF153416 AF153418 NM_018424 NM_019114	-78907	-	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	-232390	-	AK296265 AK296388 AK316118 NM_001145371 NM_001145372	29294	-	BX648253 NM_001145369 NM_001145370	51744	-	TSC_hg19_v1_chr9_-_112260588 BC063287 AK295875 AK304434 AK316066 NM_001145368 NM_002829	98670	-	AB032179|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153416|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153418|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_018424|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_019114|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4##AK296265|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK296388|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316118|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145371|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145372|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BX648253|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145369|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145370|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BC063287|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK295875|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK304434|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316066|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145368|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_002829|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	0.996864	0.0	denovo_WM_7:27:0.591	denovo_WM_7:28:0.303
chr6	150944124	150944249	reg1000708.p1	12.018	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-23166	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-254028	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-479945	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	242646	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	242735	+	TSC_hg19_v1_chr6_+_151187064 AL117452	242915	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.999671	0.0	denovo_WM_7:-22:0.227	denovo_WM_7:-23:0.585
chr10	27026656	27026816	reg1001030.p2	12.014	+	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-40090	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-40152	-	TSC_hg19_v1_chr10_+_26727703 AY152730	-299030	+	TSC_hg19_v1_chr10_-_27057776 AK315914	31081	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	123104	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	123203	-	AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK315914|ABI1|10006|abl-interactor 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1	2.79678	0.0	denovo_WM_7:-26:0.619	denovo_WM_7:-61:0.917	denovo_WM_7:-76:0.948
chr11	57529147	57529315	reg1001039.p2	12.013	+	NM_001145101	-9979	-	TSC_hg19_v1_chr11_+_57508992 BC021122	-20231	+	NM_170746 BC111087 AF536829 AJ276250 TSC_hg19_v1_chr11_+_57508954 AJ276249 BC064570	-20379	+	NM_001085458 NM_001085459 NM_001085460 NM_001085461 NM_001085462 NM_001085463 NM_001085464 NM_001085465 NM_001085466 NM_001085467 NM_001085468 NM_001085469 NM_001206883 NM_001206884 NM_001206885 NM_001206886 NM_001206887 NM_001206888 NM_001206889 NM_001206890 NM_001206891 NM_001331 TSC_hg19_v1_chr11_+_57529331 AF062317 AF062318 AF062319 AF062320 AF062321 AF062322 AF062323 AF062324 AF062325 AF062326 AF062327 AF062328 AF062329 AF062330 AF062331 AF062332 AF062333 AF062334 AF062335 AF062336 AF062337 AF062338 AF062339 AF062340 AF062341 AF062342 AF062343 AF062344 BC075795	108	+	BC110819 NM_001005212	262121	+	BC151146 BC151147 NM_001005186	269181	+	NM_001145101|BTBD18|643376|BTB (POZ) domain containing 18##BC021122|C11orf31|280636|chromosome 11 open reading frame 31##NM_170746|C11orf31|280636|chromosome 11 open reading frame 31##AF536829|C11orf31|280636|chromosome 11 open reading frame 31##AJ276250|C11orf31|280636|chromosome 11 open reading frame 31##AJ276249|C11orf31|280636|chromosome 11 open reading frame 31##BC064570|C11orf31|280636|chromosome 11 open reading frame 31##NM_001085458|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085459|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085460|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085461|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085462|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085463|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085464|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085465|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085466|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085467|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085468|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085469|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206883|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206884|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206885|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206886|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206887|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206888|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206889|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206890|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206891|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062317|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062318|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062319|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062320|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062321|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062322|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062323|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062324|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062325|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062326|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062327|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062328|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062329|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062330|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062332|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062333|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062334|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062335|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062336|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062337|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062338|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062339|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062340|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062341|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062342|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062343|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062344|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC075795|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC110819|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##NM_001005212|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##BC151146|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##BC151147|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005186|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1	0.098913	0.0	
chr12	96589391	96589530	reg1001053.p4	12.013	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-1193	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-1334	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-160045	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	204523	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	204857	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	711571	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.908895	0.0	denovo_WM_7:-14:0.363	denovo_WM_7:-17:0.237
chr17	76628195	76628311	reg1001014.p1	12.006	+	NM_173628	-54778	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-253523	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-272096	-	AK316277 TSC_hg19_v1_chr17_-_76719649	91394	-	TSC_hg19_v1_chr17_-_76719676 AK293894	91498	-	TSC_hg19_v1_chr17_-_76732958 AK311535	104745	-	NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	1.985116	0.0	denovo_WM_7:57:0.978	denovo_WM_7:72:0.977
chr15	70964527	70964677	reg1000985.p2	12.004	+	TSC_hg19_v1_chr15_-_70878946 BC040579	-85658	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	-574359	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	-574375	-	BC016881 AL834243 NM_001008224 AK055435	30025	-	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	91240	-	CU675231 BC006082 BC009446 BC014018 AL833876 BC039153 TSC_hg19_v1_chr15_-_71146496 AK130092 AF443828 AF443829 AK002058 NM_018357 NM_197958	181866	-	BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC006082|LARP6|55323|La ribonucleoprotein domain family, member 6##BC009446|LARP6|55323|La ribonucleoprotein domain family, member 6##BC014018|LARP6|55323|La ribonucleoprotein domain family, member 6##AL833876|LARP6|55323|La ribonucleoprotein domain family, member 6##BC039153|LARP6|55323|La ribonucleoprotein domain family, member 6##AK130092|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443828|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443829|LARP6|55323|La ribonucleoprotein domain family, member 6##AK002058|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_018357|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_197958|LARP6|55323|La ribonucleoprotein domain family, member 6	0.996672	0.0	denovo_WM_7:2:0.980
chr11	355009	355168	reg1000813.p2	12.001	+	TSC_hg19_v1_chr11_-_320925 X57352	-34101	-	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	-34244	-	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	-41077	+	TSC_hg19_v1_chr11_+_369724 NM_178537 AB089939 BC131528	14677	+	TSC_hg19_v1_chr11_+_394208 BC000081 NM_007183 AK025067 AK223511 Z98265	39124	+	AF053719 TSC_hg19_v1_chr11_+_394242 DQ891692 DQ894875 CU674026	39176	+	X57352|IFITM3|10410|interferon induced transmembrane protein 3##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_178537|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##AB089939|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC131528|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC000081|PKP3|11187|plakophilin 3##NM_007183|PKP3|11187|plakophilin 3##AK025067|PKP3|11187|plakophilin 3##AK223511|PKP3|11187|plakophilin 3##Z98265|PKP3|11187|plakophilin 3##AF053719|PKP3|11187|plakophilin 3##DQ891692|PKP3|11187|plakophilin 3##DQ894875|PKP3|11187|plakophilin 3	1.993621	0.0	denovo_WM_7:44:0.358	denovo_WM_7:45:0.269	denovo_WM_7:61:0.289	denovo_WM_7:62:0.378
chr14	89892453	89892590	reg1000997.p2	11.998	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-9111	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-13745	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-601528	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	193074	-	BC001787 BX247991 AK298930 AK094740 NM_145231	528539	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	529725	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	1.196271	0.0	denovo_WM_7:56:0.265
chr10	91847197	91847377	reg1000909.p1	11.997	+	TSC_hg19_v1_chr10_+_91498725 AK025628	-348520	+	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	-385912	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-441963	-	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	770159	-	BC047526 NM_000872 NM_019859 NM_019860 TSC_hg19_v1_chr10_-_92617758	770446	-	TSC_hg19_v1_chr10_+_92631241 BC006991	783970	+	AK025628|KIF20B|9585|kinesin family member 20B##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##BC047526|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_000872|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019859|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019860|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##BC006991|RPP30|10556|ribonuclease P/MRP 30kDa subunit	1.916623	0.0	denovo_WM_7:16:0.493	denovo_WM_7:17:0.410	denovo_WM_7:32:0.832
chr11	32091367	32091509	reg1001034.p1	11.990	+	AB593092 AK314470 NM_001127612 TSC_hg19_v1_chr11_-_31839510	-251960	-	AB209177 TSC_hg19_v1_chr11_-_31832871 BX640762 NM_000280 NM_001604	-258569	-	BC011953 TSC_hg19_v1_chr11_-_31832790	-258651	-	TSC_hg19_v1_chr11_+_32112495 AK129791 NM_002901	21039	+	BC010120 TSC_hg19_v1_chr11_+_32112676 D42073 CU679627 DQ892928 DQ896177	21261	+	AK093168 BC032861 NM_001198551 NM_001198552	360922	-	AB593092|PAX6|5080|paired box 6##AK314470|PAX6|5080|paired box 6##NM_001127612|PAX6|5080|paired box 6##AB209177|PAX6|5080|paired box 6##BX640762|PAX6|5080|paired box 6##NM_000280|PAX6|5080|paired box 6##NM_001604|PAX6|5080|paired box 6##BC011953|PAX6|5080|paired box 6##AK129791|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##NM_002901|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##BC010120|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##D42073|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ892928|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ896177|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##AK093168|WT1|7490|Wilms tumor 1##BC032861|WT1|7490|Wilms tumor 1##NM_001198551|WT1|7490|Wilms tumor 1##NM_001198552|WT1|7490|Wilms tumor 1	1.98334	0.0	denovo_WM_7:17:0.410	denovo_WM_7:18:0.460	denovo_WM_7:35:0.671
chr22	48494184	48494357	reg1001037.p1	11.990	+	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	-466767	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-1335670	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-1360115	-	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	391010	+	AK125256 NM_015381 AK123443 AY358847	477891	+	AK124962 TSC_hg19_v1_chr22_-_50051168 BC033837 BC048207	1556863	-	AK093107|LOC284930|284930|uncharacterized LOC284930##NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK124962|C22orf34|348645|chromosome 22 open reading frame 34##BC048207|C22orf34|348645|chromosome 22 open reading frame 34	0.017877	0.0	
chr10	75926397	75926577	reg1001116.p2	11.989	+	TSC_hg19_v1_chr10_+_75910978 NM_001202450 NM_006721 AK301590 U90338 U33936	-15518	+	TSC_hg19_v1_chr10_-_75910561 AK315597 AK026983 AK299352 BC026232 NM_012095 NM_207012	-15799	-	TSC_hg19_v1_chr10_-_75910513 BC067127	-15975	-	TSC_hg19_v1_chr10_+_75936308 NM_001123 NM_001202449	9780	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	9995	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	10043	+	NM_001202450|ADK|132|adenosine kinase##NM_006721|ADK|132|adenosine kinase##AK301590|ADK|132|adenosine kinase##U90338|ADK|132|adenosine kinase##U33936|ADK|132|adenosine kinase##AK315597|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK026983|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK299352|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##BC026232|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_012095|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_207012|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##BC067127|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_001123|ADK|132|adenosine kinase##NM_001202449|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase	1.986998	0.0	denovo_WM_7:-17:0.278	denovo_WM_7:-18:0.272	denovo_WM_7:-19:0.284	denovo_WM_7:-34:0.871
chr8	128192499	128192674	reg1001154.p2	11.988	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-621862	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-622031	-	TSC_hg19_v1_chr8_-_126963395 BX648371	-1229173	-	DQ486513 NM_001159542	235270	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	555739	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	555904	+	NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	0.99926	0.0	
chr15	52313484	52313639	reg1000953.p3	11.985	+	TSC_hg19_v1_chr15_+_52311442 BC035492	-2100	+	TSC_hg19_v1_chr15_+_52311432 CR749401	-2127	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	-2142	+	AF285092 AB587584 TSC_hg19_v1_chr15_-_52404936 BC093826 BC093828 BC143227 BC104442 BC104443 AF326964 NM_020396	91385	-	AB528747 AF501885 AM393025 TSC_hg19_v1_chr15_-_52472123 AL117471 BC011671 AK314775 BC013997 AF017656 NM_006578 AK290330	158580	-	TSC_hg19_v1_chr15_+_52472257 AF007131	158774	+	BC035492|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##AF285092|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093826|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093828|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104442|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104443|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF326964|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##NM_020396|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF501885|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AM393025|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AL117471|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC011671|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK314775|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC013997|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF017656|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##NM_006578|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK290330|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973	0.99985	0.0	
chr8	73924859	73924982	reg1000952.p1	11.984	+	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	-3808	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-475277	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-937086	-	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	80522	-	BC150551 BC150552 NM_001243237	246816	-	CR456773 L16558 AB529035 BC071671 BC071895 BC087837 BC071894 BC001476 BC006095 X57959 AB055763 AK225246 AK225254 AK291119 AK313365 X52967 BC009599 NM_000971	280937	-	NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301##CR456773|RPL7|6129|ribosomal protein L7##L16558|RPL7|6129|ribosomal protein L7##BC071671|RPL7|6129|ribosomal protein L7##BC071895|RPL7|6129|ribosomal protein L7##BC087837|RPL7|6129|ribosomal protein L7##BC071894|RPL7|6129|ribosomal protein L7##BC006095|RPL7|6129|ribosomal protein L7##X57959|RPL7|6129|ribosomal protein L7##AK225246|RPL7|6129|ribosomal protein L7##AK225254|RPL7|6129|ribosomal protein L7##AK291119|RPL7|6129|ribosomal protein L7##AK313365|RPL7|6129|ribosomal protein L7##X52967|RPL7|6129|ribosomal protein L7##BC009599|RPL7|6129|ribosomal protein L7##NM_000971|RPL7|6129|ribosomal protein L7	0.997801	0.0	denovo_WM_7:-5:0.890
chr4	37852601	37852731	reg1000878.p1	11.983	+	TSC_hg19_v1_chr4_+_37828339 AK223237 AK303374 AF109360 BC010087 AK001845 AK297752 CR457274 CU679607	-24323	+	TSC_hg19_v1_chr4_+_37828307 NM_018290 AL136705 AK310927	-24366	+	TSC_hg19_v1_chr4_-_37687999 BC039540 AK075468 NM_001085399 NM_001085400	-164693	-	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	40123	+	AF095288 BC069114 BC069400 NM_006607	109389	+	TSC_hg19_v1_chr4_+_37979032 AK303574	126351	+	AK223237|PGM2|55276|phosphoglucomutase 2##AK303374|PGM2|55276|phosphoglucomutase 2##AF109360|PGM2|55276|phosphoglucomutase 2##BC010087|PGM2|55276|phosphoglucomutase 2##AK001845|PGM2|55276|phosphoglucomutase 2##AK297752|PGM2|55276|phosphoglucomutase 2##CR457274|PGM2|55276|phosphoglucomutase 2##NM_018290|PGM2|55276|phosphoglucomutase 2##AL136705|PGM2|55276|phosphoglucomutase 2##AK310927|PGM2|55276|phosphoglucomutase 2##BC039540|RELL1|768211|RELT-like 1##AK075468|RELL1|768211|RELT-like 1##NM_001085399|RELL1|768211|RELT-like 1##NM_001085400|RELL1|768211|RELT-like 1##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	0.992509	0.0	
chr11	9332173	9332309	reg1001095.p1	11.981	+	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	-45379	-	TSC_hg19_v1_chr11_-_9225783 AK302478	-106420	-	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-219103	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	3818	-	TSC_hg19_v1_chr11_-_9336141 D26067	3897	-	TSC_hg19_v1_chr11_-_9336182 BC044597 BC035034 NM_001165030 NM_015012	3996	-	AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK302478|DENND5A|23258|DENN/MADD domain containing 5A##BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B##D26067|TMEM41B|440026|transmembrane protein 41B##BC044597|TMEM41B|440026|transmembrane protein 41B##BC035034|TMEM41B|440026|transmembrane protein 41B##NM_001165030|TMEM41B|440026|transmembrane protein 41B##NM_015012|TMEM41B|440026|transmembrane protein 41B	0.99932	0.0	
chr19	10349891	10350004	reg1000045.p2	11.981	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-7941	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-44220	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-44342	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	12700	+	TSC_hg19_v1_chr19_+_10362889 BC009858	12951	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	13045	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.99453	0.0	
chr8	128575792	128575951	reg1001172.p1	11.974	+	DQ486513 NM_001159542	-148015	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-1005147	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-1005316	-	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	172454	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	172619	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	230912	+	DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)	0.997878	0.0	denovo_WM_7:-13:0.298	denovo_WM_7:-14:0.298	denovo_WM_7:-15:0.298
chr3	100428248	100428392	reg1001084.p2	11.972	+	NM_001007565 NM_001195479 NM_006070 TSC_hg19_v1_chr3_+_100428337 AK093456 BC009241	-75	+	NM_032787 AK027360	-99882	+	BC040355 TSC_hg19_v1_chr3_+_100238088	-190245	+	TSC_hg19_v1_chr3_+_100428385 BC001483 NM_001195478	53	+	TSC_hg19_v1_chr3_+_100428396 BC041600 BC023599	144	+	CU688850 EU832117 EU832211 AK025204 AL833204 BC030221 TSC_hg19_v1_chr3_-_100712327 NM_015429	283970	-	NM_001007565|TFG|10342|TRK-fused gene##NM_001195479|TFG|10342|TRK-fused gene##NM_006070|TFG|10342|TRK-fused gene##AK093456|TFG|10342|TRK-fused gene##BC009241|TFG|10342|TRK-fused gene##NM_032787|GPR128|84873|G protein-coupled receptor 128##AK027360|GPR128|84873|G protein-coupled receptor 128##BC040355|TMEM45A|55076|transmembrane protein 45A##BC001483|TFG|10342|TRK-fused gene##NM_001195478|TFG|10342|TRK-fused gene##BC041600|TFG|10342|TRK-fused gene##BC023599|TFG|10342|TRK-fused gene##EU832117|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##EU832211|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AK025204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AL833204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC030221|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##NM_015429|ABI3BP|25890|ABI family, member 3 (NESH) binding protein	0.980824	0.0	denovo_WM_7:-1:0.981
chr3	108800978	108801130	reg1001395.p1	11.969	+	AF110003 EU832759 GQ129299 AF110002 BC103993 BC103994 AB593147 NM_005459	-128443	-	AK291991 AJ240085 AF161547 NM_016388 BC025713 AJ224878	-259460	+	HQ258043 AM050721 BC113502 BC113528 BC069318 AF290873 AF323084 AY358655 NM_032579 TSC_hg19_v1_chr3_-_108476258	-324909	-	CU690636 BC050307 AK302642 AF084946 BC028680 NM_014429	35896	-	AK026416 TSC_hg19_v1_chr3_+_108855566	54509	+	BC018070 AY283672 NM_138815	234247	-	AF110003|GUCA1C|9626|guanylate cyclase activator 1C##EU832759|GUCA1C|9626|guanylate cyclase activator 1C##GQ129299|GUCA1C|9626|guanylate cyclase activator 1C##AF110002|GUCA1C|9626|guanylate cyclase activator 1C##BC103993|GUCA1C|9626|guanylate cyclase activator 1C##BC103994|GUCA1C|9626|guanylate cyclase activator 1C##AB593147|GUCA1C|9626|guanylate cyclase activator 1C##NM_005459|GUCA1C|9626|guanylate cyclase activator 1C##AK291991|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ240085|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AF161547|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##NM_016388|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##BC025713|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ224878|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##HQ258043|RETNLB|84666|resistin like beta##AM050721|RETNLB|84666|resistin like beta##BC113502|RETNLB|84666|resistin like beta##BC113528|RETNLB|84666|resistin like beta##BC069318|RETNLB|84666|resistin like beta##AF290873|RETNLB|84666|resistin like beta##AF323084|RETNLB|84666|resistin like beta##AY358655|RETNLB|84666|resistin like beta##NM_032579|RETNLB|84666|resistin like beta##BC050307|MORC1|27136|MORC family CW-type zinc finger 1##AK302642|MORC1|27136|MORC family CW-type zinc finger 1##AF084946|MORC1|27136|MORC family CW-type zinc finger 1##BC028680|MORC1|27136|MORC family CW-type zinc finger 1##NM_014429|MORC1|27136|MORC family CW-type zinc finger 1##AK026416|FLJ22763|401081|uncharacterized LOC401081##BC018070|DPPA2|151871|developmental pluripotency associated 2##AY283672|DPPA2|151871|developmental pluripotency associated 2##NM_138815|DPPA2|151871|developmental pluripotency associated 2	0.994427	0.222433	CTCF.p2:4:0.222	denovo_WM_7:50:0.697
chr21	30391585	30391727	reg1000945.p1	11.967	+	CU676110 TSC_hg19_v1_chr21_-_30391645 AF212232 BC012546 Y19009 BC017912 AK000056 AL355727 NM_016940 AK223357	-9	-	BC007525 AB384515 TSC_hg19_v1_chr21_-_30365185 AF161350 AB018257 BC150284 AB621822 BC029371 BC140790 AK001915 BC031633 NM_015565	-26463	-	TSC_hg19_v1_chr21_-_30257688 AB590951 BC011554 AK314100 AK225515 AF139682 NM_013240 NM_182749	-133993	-	TSC_hg19_v1_chr21_+_30396981 NM_001001992 NM_001032410 NM_006447 AK025104 AK025989 AK294284 BC030777 BC010375 AK222681 AF126736 AY333928 AK222884 AK300771	5335	+	DQ892395 DQ895610 TSC_hg19_v1_chr21_+_30400257	8587	+	AB590043 BC035472 TSC_hg19_v1_chr21_-_30445937 AK222490 D13627	54274	-	AF212232|RWDD2B|10069|RWD domain containing 2B##BC012546|RWDD2B|10069|RWD domain containing 2B##Y19009|RWDD2B|10069|RWD domain containing 2B##BC017912|RWDD2B|10069|RWD domain containing 2B##AK000056|RWDD2B|10069|RWD domain containing 2B##AL355727|RWDD2B|10069|RWD domain containing 2B##NM_016940|RWDD2B|10069|RWD domain containing 2B##AK223357|RWDD2B|10069|RWD domain containing 2B##BC007525|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AF161350|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AB018257|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC150284|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC029371|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC140790|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AK001915|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC031633|LTN1|26046|listerin E3 ubiquitin protein ligase 1##NM_015565|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC011554|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK314100|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK225515|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AF139682|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_013240|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_182749|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_001001992|USP16|10600|ubiquitin specific peptidase 16##NM_001032410|USP16|10600|ubiquitin specific peptidase 16##NM_006447|USP16|10600|ubiquitin specific peptidase 16##AK025104|USP16|10600|ubiquitin specific peptidase 16##AK025989|USP16|10600|ubiquitin specific peptidase 16##AK294284|USP16|10600|ubiquitin specific peptidase 16##BC030777|USP16|10600|ubiquitin specific peptidase 16##BC010375|USP16|10600|ubiquitin specific peptidase 16##AK222681|USP16|10600|ubiquitin specific peptidase 16##AF126736|USP16|10600|ubiquitin specific peptidase 16##AY333928|USP16|10600|ubiquitin specific peptidase 16##AK222884|USP16|10600|ubiquitin specific peptidase 16##AK300771|USP16|10600|ubiquitin specific peptidase 16##DQ892395|USP16|10600|ubiquitin specific peptidase 16##DQ895610|USP16|10600|ubiquitin specific peptidase 16##BC035472|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK222490|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##D13627|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)	0.99854	0.0	denovo_WM_7:23:0.794
chr12	92566654	92566800	reg1000816.p1	11.965	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-27084	-	NM_001920	-989922	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-990147	-	AJ845165 AJ845166 NM_001025233	251007	+	AJ845168 NM_001025232	255196	-	NM_001037671 NM_001178097	529891	+	BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74	0.98847	0.0	denovo_WM_7:16:0.462	denovo_WM_7:17:0.412
chr9	128209253	128209411	reg1001111.p2	11.954	+	TSC_hg19_v1_chr9_+_128024122 AK056493 NM_015635 AB040954 BC114937 BC114962	-185183	+	TSC_hg19_v1_chr9_+_128024104 BC110990	-185228	+	TSC_hg19_v1_chr9_+_128024097 AK296381	-185234	+	TSC_hg19_v1_chr9_-_128469297 M37191	259978	-	TSC_hg19_v1_chr9_-_128469466 AK290060	260135	-	AL833042 TSC_hg19_v1_chr9_-_128469485 AY633624 AY633625 AY633626 BC002326 BC003044	260147	-	AK056493|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##NM_015635|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AB040954|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114937|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114962|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##M37191|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AK290060|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AL833042|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633624|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633625|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633626|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC002326|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC003044|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1	0.993524	0.0	denovo_WM_7:18:0.889
chr2	27526403	27526523	reg1001340.p1	11.952	+	AK300699 NM_032546 NM_187841 AK311516	-21165	+	AK097736 NM_173650 AK311597 BC035194 AK302239	-28149	+	CU688460 DQ892115 DQ895310 U76010 TSC_hg19_v1_chr2_-_27485916 AK313600 BC028358 NM_003459	-40577	-	BC104470 BC104471 NM_003353	4658	-	TSC_hg19_v1_chr2_-_27545948 AF088036 AK311549 X76538 NM_002437	19479	-	TSC_hg19_v1_chr2_-_27579344 BX647092	52868	-	AK300699|TRIM54|57159|tripartite motif containing 54##NM_032546|TRIM54|57159|tripartite motif containing 54##NM_187841|TRIM54|57159|tripartite motif containing 54##AK097736|DNAJC5G|285126|DnaJ (Hsp40) homolog, subfamily C, member 5 gamma##NM_173650|DNAJC5G|285126|DnaJ (Hsp40) homolog, subfamily C, member 5 gamma##BC035194|DNAJC5G|285126|DnaJ (Hsp40) homolog, subfamily C, member 5 gamma##AK302239|DNAJC5G|285126|DnaJ (Hsp40) homolog, subfamily C, member 5 gamma##DQ892115|SLC30A3|7781|solute carrier family 30 (zinc transporter), member 3##DQ895310|SLC30A3|7781|solute carrier family 30 (zinc transporter), member 3##U76010|SLC30A3|7781|solute carrier family 30 (zinc transporter), member 3##AK313600|SLC30A3|7781|solute carrier family 30 (zinc transporter), member 3##BC028358|SLC30A3|7781|solute carrier family 30 (zinc transporter), member 3##NM_003459|SLC30A3|7781|solute carrier family 30 (zinc transporter), member 3##BC104470|UCN|7349|urocortin##BC104471|UCN|7349|urocortin##NM_003353|UCN|7349|urocortin##AF088036|MPV17|4358|MpV17 mitochondrial inner membrane protein##X76538|MPV17|4358|MpV17 mitochondrial inner membrane protein##NM_002437|MPV17|4358|MpV17 mitochondrial inner membrane protein##BX647092|GTF3C2|2976|general transcription factor IIIC, polypeptide 2, beta 110kDa	0.997691	0.0	denovo_WM_7:-38:0.527	denovo_WM_7:-39:0.470
chr8	26241324	26241496	reg1001060.p1	11.952	+	NM_004331 TSC_hg19_v1_chr8_+_26240583 AF452712 AK300286 AL132665 BC009603 AF067396 AF079221 AF060922 AK307195 AK300727 AF536326 AB004788 AK290213 BC001559 AB527613 BT019500 BT019501 CR456701 EU831983 EU832076	-826	+	AK303981 NM_001177591	-90679	+	TSC_hg19_v1_chr8_+_26149092 M64929 AY189686	-92216	+	BC047515 TSC_hg19_v1_chr8_-_26371389 BC036489 AK055325 NM_007257	130024	-	TSC_hg19_v1_chr8_+_26371546 AK092377 NM_001197293 AB370195	130218	+	NM_001386 TSC_hg19_v1_chr8_+_26435441 BX647115 BC067109	193991	+	NM_004331|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF452712|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300286|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AL132665|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC009603|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF067396|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF079221|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF060922|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK307195|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300727|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF536326|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AB004788|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK290213|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC001559|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019500|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019501|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##CR456701|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU831983|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU832076|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK303981|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##NM_001177591|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##M64929|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AY189686|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC047515|PNMA2|10687|paraneoplastic antigen MA2##BC036489|PNMA2|10687|paraneoplastic antigen MA2##AK055325|PNMA2|10687|paraneoplastic antigen MA2##NM_007257|PNMA2|10687|paraneoplastic antigen MA2##AK092377|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001197293|DPYSL2|1808|dihydropyrimidinase-like 2##AB370195|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001386|DPYSL2|1808|dihydropyrimidinase-like 2##BX647115|DPYSL2|1808|dihydropyrimidinase-like 2##BC067109|DPYSL2|1808|dihydropyrimidinase-like 2	1.971465	0.0	denovo_WM_7:10:0.897	denovo_WM_7:-30:0.898
chr6	21603782	21603953	reg1001277.p1	11.945	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-9495	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1069144	+	CR749285 NM_001243076	-1199834	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	62792	+	BC015850 NM_000948	693862	-	X54394 X54393 GQ305133 M58594 NM_001163558	699180	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.982889	0.0	denovo_WM_7:-10:0.495	denovo_WM_7:-12:0.242
chr6	64229189	64229316	reg1001046.p1	11.944	+	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	-199388	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	-1233251	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-5941573	-	TSC_hg19_v1_chr6_+_64231650 CR749458	2403	+	TSC_hg19_v1_chr6_+_64281913 BC045571 NM_003463	52664	+	TSC_hg19_v1_chr6_+_64282432 AK312526	53183	+	DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC045571|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##NM_003463|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AK312526|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.513159	0.0	denovo_WM_7:-33:0.405
chrX	109124044	109124201	reg1001058.p2	11.943	+	TSC_hg19_v1_chrX_-_108976528 AB061713 AK292070 AF030555 NM_004458 NM_022977	-147558	-	TSC_hg19_v1_chrX_-_108976464 Y12777 Y13058 AB061714 BC034959 AK307566 AK294915	-147643	-	DQ891287 DQ894471 DQ896649 DQ896656 DQ896659 DQ896664 EF535525 BC035330 AJ012743 NM_012282 AK223306 AK314923 DQ192294 TSC_hg19_v1_chrX_-_108868398	-255798	-	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	121748	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	122218	+	TSC_hg19_v1_chrX_+_109246360 BC085605	122233	+	AB061713|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK292070|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AF030555|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_004458|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_022977|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y12777|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y13058|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AB061714|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##BC034959|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK307566|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK294915|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##DQ891287|KCNE1L|23630|KCNE1-like##DQ894471|KCNE1L|23630|KCNE1-like##DQ896649|KCNE1L|23630|KCNE1-like##DQ896656|KCNE1L|23630|KCNE1-like##DQ896659|KCNE1L|23630|KCNE1-like##DQ896664|KCNE1L|23630|KCNE1-like##EF535525|KCNE1L|23630|KCNE1-like##BC035330|KCNE1L|23630|KCNE1-like##AJ012743|KCNE1L|23630|KCNE1-like##NM_012282|KCNE1L|23630|KCNE1-like##AK223306|KCNE1L|23630|KCNE1-like##AK314923|KCNE1L|23630|KCNE1-like##DQ192294|KCNE1L|23630|KCNE1-like##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##BC085605|TMEM164|84187|transmembrane protein 164	1.828557	0.0	denovo_WM_7:8:0.682	denovo_WM_7:88:0.951
chr19	48112065	48112192	reg1000976.p1	11.942	+	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	-684	+	NM_001101419	-53016	-	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-93713	-	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	104522	+	NM_015710 TSC_hg19_v1_chr19_+_48248797	136666	+	TSC_hg19_v1_chr19_+_48248802 AK303180 AK297877 AK303918 AK309788 AK301117 AF182076 BC006311 BC013203 AY535000 CU679611 DQ892724 DQ895973 AK024486 BC013235 BC013307 BC014009 BC039869 BC007248 BC004229 AF296124 AL359336 AL359335	136707	+	BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_001101419|ZNF541|84215|zinc finger protein 541##BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2##NM_015710|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK297877|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK303918|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK309788|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK301117|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AF182076|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC006311|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013203|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AY535000|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##DQ892724|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##DQ895973|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK024486|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013235|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013307|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC014009|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC039869|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC007248|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC004229|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AF296124|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AL359336|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AL359335|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2	1.986686	0.0	denovo_WM_7:29:0.324	denovo_WM_7:30:0.324	denovo_WM_7:31:0.324	denovo_WM_7:69:0.891
chr19	49140639	49140798	reg1001100.p1	11.942	+	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-114	-	BC010671 NM_001204160 EF107108 AK125560	-12472	+	AK000599 TSC_hg19_v1_chr19_+_49127648	-13068	+	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	8633	-	BC018654 BC018697 BC033207 NM_145807 BC021210	35555	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	58543	+	AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC010671|SPHK2|56848|sphingosine kinase 2##NM_001204160|SPHK2|56848|sphingosine kinase 2##EF107108|SPHK2|56848|sphingosine kinase 2##AK125560|SPHK2|56848|sphingosine kinase 2##AK000599|SPHK2|56848|sphingosine kinase 2##AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)	0.0	0.0	
chr22	42320938	42321109	reg1000769.p3	11.940	+	NM_001207020	-10353	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-91752	+	TSC_hg19_v1_chr22_+_42229253 BC056158 U02031 BC051385 CT841522 AK299914	-91822	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	1776	-	EU035297 NM_001110215	15199	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	22100	-	NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC056158|SREBF2|6721|sterol regulatory element binding transcription factor 2##U02031|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051385|SREBF2|6721|sterol regulatory element binding transcription factor 2##CT841522|SREBF2|6721|sterol regulatory element binding transcription factor 2##AK299914|SREBF2|6721|sterol regulatory element binding transcription factor 2##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M	2.000939	0.0	denovo_WM_7:-46:0.953	denovo_WM_7:-61:0.972
chr2	102372260	102372420	reg1000771.p2	11.934	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-57988	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-281147	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-368351	-	TSC_hg19_v1_chr2_+_102508334 BC045694	136002	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	136192	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	236023	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	1.97233	0.0	denovo_WM_7:54:0.479	denovo_WM_7:58:0.331	denovo_WM_7:73:0.502
chr3	72004784	72004914	reg1000695.p1	11.934	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-170578	-	AK313656 NM_173359	-200926	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-201327	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	892699	-	BC017274 TSC_hg19_v1_chr3_-_72897575	892726	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	892743	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.998289	0.954633	denovo_WM_7:21:0.453	denovo_WM_7:22:0.219	denovo_WM_7:23:0.219	CTCF.p2:-32:0.955
chr20	5630884	5630968	reg1000613.p2	11.933	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-39339	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-335890	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-523231	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	100140	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	261200	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	300197	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	1.877368	0.0	denovo_WM_7:40:0.248	denovo_WM_7:41:0.247	denovo_WM_7:42:0.223	denovo_WM_7:43:0.223	denovo_WM_7:65:0.633
chr1	110162297	110162442	reg1001409.p1	11.931	+	BC000233 NM_005272	-6681	-	TSC_hg19_v1_chr1_+_110091256 J03238 AK311691 AK312252 J03198 M27543 AB463705 DQ892862 DQ896111 CU692958 AF493907 BT019973 BT019974 J03005	-71074	+	TSC_hg19_v1_chr1_+_110091227 BC025285	-71144	+	TSC_hg19_v1_chr1_+_110162458 AK025706 NM_139156	73	+	TSC_hg19_v1_chr1_+_110162467 BC007711 BC075844 AK314494 U16267	172	+	NM_004037 U16268	906	+	BC000233|GNAT2|2780|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2##NM_005272|GNAT2|2780|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2##J03238|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##AK311691|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##AK312252|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##J03198|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##M27543|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##DQ892862|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##DQ896111|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##AF493907|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##BT019973|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##BT019974|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##J03005|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##BC025285|GNAI3|2773|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3##AK025706|AMPD2|271|adenosine monophosphate deaminase 2##NM_139156|AMPD2|271|adenosine monophosphate deaminase 2##BC007711|AMPD2|271|adenosine monophosphate deaminase 2##BC075844|AMPD2|271|adenosine monophosphate deaminase 2##AK314494|AMPD2|271|adenosine monophosphate deaminase 2##U16267|AMPD2|271|adenosine monophosphate deaminase 2##NM_004037|AMPD2|271|adenosine monophosphate deaminase 2##U16268|AMPD2|271|adenosine monophosphate deaminase 2	0.0	0.0	
chr19	2258080	2258207	reg1001302.p1	11.929	+	AK056978 NM_144616	-1725	-	NM_000479	-9031	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-21305	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	11377	+	TSC_hg19_v1_chr19_+_2269526 BC042364	11383	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	11399	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.996108	0.0	denovo_WM_7:-58:0.300	denovo_WM_7:-60:0.515
chr7	49806663	49806800	reg1000895.p1	11.928	+	AK126220 AY204751 BX647273 NM_152701	-1595676	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	-1677776	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	-1677931	+	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	6539	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	326093	-	NM_001161834	328950	+	AK126220|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##AY204751|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##NM_152701|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72	0.910195	0.0	denovo_WM_7:9:0.592
chr12	92860959	92861102	reg1001021.p1	11.924	+	AJ845168 NM_001025232	-39107	-	AJ845165 AJ845166 NM_001025233	-43296	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-321387	-	NM_001037671 NM_001178097	235588	+	NM_001004330 AK128530	269257	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	461908	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.999914	0.0	
chr3	4550028	4550208	reg1001097.p2	11.923	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-14922	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-14990	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-15087	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	470998	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	471063	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	471236	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.998221	0.0	
chr6	13259711	13259853	reg1000960.p1	11.922	+	AK290017 NM_001242648 NM_030948 TSC_hg19_v1_chr6_+_12717049	-542739	+	AK295263 TSC_hg19_v1_chr6_+_12716998	-542839	+	TSC_hg19_v1_chr6_+_12514301 D28417	-745480	+	AK091836 AX747210 NM_001242698	36035	-	AF151073 AK223445 AY542308 AY826820 TSC_hg19_v1_chr6_-_13328771 BC050465 AK057228 AK296391 BC007054 AL833474 NM_001143964 NM_001143965 NM_001143966 NM_016495	68918	-	AK027010 NM_001242630	148586	-	AK290017|PHACTR1|221692|phosphatase and actin regulator 1##NM_001242648|PHACTR1|221692|phosphatase and actin regulator 1##NM_030948|PHACTR1|221692|phosphatase and actin regulator 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1##AK091836|LOC100130357|100130357|uncharacterized LOC100130357##NM_001242698|LOC100130357|100130357|uncharacterized LOC100130357##AF151073|TBC1D7|51256|TBC1 domain family, member 7##AK223445|TBC1D7|51256|TBC1 domain family, member 7##AY542308|TBC1D7|51256|TBC1 domain family, member 7##AY826820|TBC1D7|51256|TBC1 domain family, member 7##BC050465|TBC1D7|51256|TBC1 domain family, member 7##AK057228|TBC1D7|51256|TBC1 domain family, member 7##AK296391|TBC1D7|51256|TBC1 domain family, member 7##BC007054|TBC1D7|51256|TBC1 domain family, member 7##AL833474|TBC1D7|51256|TBC1 domain family, member 7##NM_001143964|TBC1D7|51256|TBC1 domain family, member 7##NM_001143965|TBC1D7|51256|TBC1 domain family, member 7##NM_001143966|TBC1D7|51256|TBC1 domain family, member 7##NM_016495|TBC1D7|51256|TBC1 domain family, member 7##AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	0.0	0.0	
chr14	93048694	93048835	reg1000964.p1	11.920	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-68805	+	NM_153646 AF520704 AF520705 BC069653	-258588	+	AK295059 NM_153647	-259228	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	69872	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	70059	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	166195	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.999244	0.0	
chr2	231821584	231821751	reg1001229.p1	11.914	+	BC032694 NM_005683	-31727	-	TSC_hg19_v1_chr2_+_231729704 AY049777 EU831609 EU831632 EU831696 EU832488 EU832568 AB003629 CR457208	-91945	+	TSC_hg19_v1_chr2_+_231729669 AK056321 AK222697 AK307702 AL136603 BC050668 BC002424 AL713651 BC025742 AK295503 BC098563	-91989	+	NM_139073 AK093385 AX748090 BC036248 AK126086 BC047704 CU690472	39225	+	TSC_hg19_v1_chr2_+_231902259 NM_001144994	80570	+	TSC_hg19_v1_chr2_+_231921588 NM_001191037 NM_002807 AK307415 BC094720	99910	+	BC032694|GPR55|9290|G protein-coupled receptor 55##NM_005683|GPR55|9290|G protein-coupled receptor 55##AY049777|ITM2C|81618|integral membrane protein 2C##EU831609|ITM2C|81618|integral membrane protein 2C##EU831632|ITM2C|81618|integral membrane protein 2C##EU831696|ITM2C|81618|integral membrane protein 2C##EU832488|ITM2C|81618|integral membrane protein 2C##EU832568|ITM2C|81618|integral membrane protein 2C##AB003629|ITM2C|81618|integral membrane protein 2C##CR457208|ITM2C|81618|integral membrane protein 2C##AK056321|ITM2C|81618|integral membrane protein 2C##AK222697|ITM2C|81618|integral membrane protein 2C##AK307702|ITM2C|81618|integral membrane protein 2C##AL136603|ITM2C|81618|integral membrane protein 2C##BC050668|ITM2C|81618|integral membrane protein 2C##BC002424|ITM2C|81618|integral membrane protein 2C##AL713651|ITM2C|81618|integral membrane protein 2C##BC025742|ITM2C|81618|integral membrane protein 2C##AK295503|ITM2C|81618|integral membrane protein 2C##BC098563|ITM2C|81618|integral membrane protein 2C##NM_139073|SPATA3|130560|spermatogenesis associated 3##AK093385|SPATA3|130560|spermatogenesis associated 3##BC036248|SPATA3|130560|spermatogenesis associated 3##AK126086|SPATA3|130560|spermatogenesis associated 3##BC047704|SPATA3|130560|spermatogenesis associated 3##NM_001144994|C2orf72|257407|chromosome 2 open reading frame 72##NM_001191037|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##NM_002807|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307415|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC094720|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.999269	0.0	denovo_WM_7:-23:0.577	denovo_WM_7:-24:0.288
chr19	16510423	16510548	reg1000989.p1	11.912	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-74716	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-74844	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-201735	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	72291	-	TSC_hg19_v1_chr19_-_16582810 AK291359	72367	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	96485	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	1.0076	0.0	denovo_WM_7:14:0.459	denovo_WM_7:15:0.459
chr18	2637044	2637214	reg1000640.p2	11.910	+	TSC_hg19_v1_chr18_+_2571589 AF017790	-65534	+	NM_006101 BC005239 TSC_hg19_v1_chr18_+_2571579 AK289396 AK313184 BC035617 BC010171	-65584	+	AK290001 BC111020 NM_022840	-65674	-	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	18785	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	209902	+	AB026706 TSC_hg19_v1_chr18_+_2907037	269872	+	AF017790|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##NM_006101|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC005239|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK289396|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK313184|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC035617|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC010171|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK290001|METTL4|64863|methyltransferase like 4##BC111020|METTL4|64863|methyltransferase like 4##NM_022840|METTL4|64863|methyltransferase like 4##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##AB026706|EMILIN2|84034|elastin microfibril interfacer 2	1.004161	0.0	
chr6	15814094	15814242	reg1001132.p1	11.903	+	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	-150878	-	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	-150991	-	TSC_hg19_v1_chr6_+_15249113 AK303610	-565055	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	315134	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	315269	+	TSC_hg19_v1_chr6_+_16143281 AK026739	329142	+	NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein	1.236647	0.0	denovo_WM_7:11:0.255	denovo_WM_7:26:0.245
chr18	55508970	55509125	reg1001253.p1	11.890	+	TSC_hg19_v1_chr18_-_55470548 NM_005603	-38577	-	NM_001242804 BC040476	-211490	+	TSC_hg19_v1_chr18_-_55289034 AK293985 NM_004539	-219946	-	TSC_hg19_v1_chr18_+_55711515 NM_001144967 NM_001243960 NM_015277	202489	+	TSC_hg19_v1_chr18_+_55711771 AB071179	202737	+	DQ890913 DQ893350 AY312514 TSC_hg19_v1_chr18_+_55711911	202859	+	NM_005603|ATP8B1|5205|ATPase, aminophospholipid transporter, class I, type 8B, member 1##NM_001242804|LOC100505549|100505549|uncharacterized LOC100505549##BC040476|LOC100505549|100505549|uncharacterized LOC100505549##AK293985|NARS|4677|asparaginyl-tRNA synthetase##NM_004539|NARS|4677|asparaginyl-tRNA synthetase##NM_001144967|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001243960|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_015277|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AB071179|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ890913|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ893350|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY312514|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like	0.0	0.0	
chr9	70859569	70859703	reg1001542.p1	11.889	+	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	-2744	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-369460	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-369486	-	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	58188	+	BC033073 NM_021965	112178	+	DQ890797 DQ893952 BC029780 NM_153237 TSC_hg19_v1_chr9_-_71155800	296129	-	NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5##DQ890797|C9orf71|169693|chromosome 9 open reading frame 71##DQ893952|C9orf71|169693|chromosome 9 open reading frame 71##BC029780|C9orf71|169693|chromosome 9 open reading frame 71##NM_153237|C9orf71|169693|chromosome 9 open reading frame 71	0.82941	0.217527	CTCF.p2:23:0.218	denovo_WM_7:-61:0.829
chr20	5634692	5634814	reg1001216.p1	11.886	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-43166	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-339717	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-527058	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	96313	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	257373	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	296370	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.989925	0.0	denovo_WM_7:20:0.361	denovo_WM_7:21:0.629
chr1	181103713	181103828	reg1001158.p1	11.880	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-45905	+	NM_016545	-46133	+	CU680340 TSC_hg19_v1_chr1_+_181003143 AF031469 AF010447	-100620	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	348930	+	BC137223 BC137224 AK128654 NM_001009992	927027	-	TSC_hg19_v1_chr1_-_182354649 AK301600	1250912	-	BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##AF031469|MR1|3140|major histocompatibility complex, class I-related##AF010447|MR1|3140|major histocompatibility complex, class I-related##NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase	0.993711	0.0	
chr6	31797837	31797974	reg1001152.p1	11.879	+	TSC_hg19_v1_chr6_+_31795518 NM_005346 AK295398 AK303967 BC001876 BC063507 BC057397 BC018740 BC009322 CU679297 DQ896426 EU176434	-2345	+	CU679297 AB527245 DQ896426 EU176434 TSC_hg19_v1_chr6_+_31783660	-14307	+	TSC_hg19_v1_chr6_+_31783319 DQ409329 AK096017 AK225692 AK225699 AK291295 AK294182 AK295398 AK298056 AK298078 AK298098 AK301574 AK303980 AK304618 AK304652 AK301243 AB209818 BC002453	-14570	+	BC017660 TSC_hg19_v1_chr6_+_31802692 AK311989 BC066330 NM_001040437 NM_001040438 AJ249731 AJ249732 BC000706 BT007334	4779	+	TSC_hg19_v1_chr6_-_31830590 BT007206 CR456717 CR541916 CU674360 DQ890716 DQ892186 DQ893896 DQ895380 AB209011 BC011900 U84246	32666	-	TSC_hg19_v1_chr6_-_31830595 AK313006 AK290966 X78687 BC000722 AF040958 NM_000434	32745	-	NM_005346|HSPA1B|3304|heat shock 70kDa protein 1B##AK295398|HSPA1B|3304|heat shock 70kDa protein 1B##AK303967|HSPA1B|3304|heat shock 70kDa protein 1B##BC001876|HSPA1B|3304|heat shock 70kDa protein 1B##BC063507|HSPA1B|3304|heat shock 70kDa protein 1B##BC057397|HSPA1B|3304|heat shock 70kDa protein 1B##BC018740|HSPA1A|3303|heat shock 70kDa protein 1A##BC009322|HSPA1A|3303|heat shock 70kDa protein 1A##DQ896426|HSPA1B|3304|heat shock 70kDa protein 1B##EU176434|HSPA1A|3303|heat shock 70kDa protein 1A##DQ896426|HSPA1B|3304|heat shock 70kDa protein 1B##EU176434|HSPA1A|3303|heat shock 70kDa protein 1A##AK096017|HSPA1A|3303|heat shock 70kDa protein 1A##AK225692|HSPA1A|3303|heat shock 70kDa protein 1A##AK225699|HSPA1A|3303|heat shock 70kDa protein 1A##AK291295|HSPA1A|3303|heat shock 70kDa protein 1A##AK294182|HSPA1A|3303|heat shock 70kDa protein 1A##AK295398|HSPA1B|3304|heat shock 70kDa protein 1B##AK298056|HSPA1A|3303|heat shock 70kDa protein 1A##AK301574|HSPA1A|3303|heat shock 70kDa protein 1A##AK303980|HSPA1A|3303|heat shock 70kDa protein 1A##AK304618|HSPA1A|3303|heat shock 70kDa protein 1A##AK304652|HSPA1A|3303|heat shock 70kDa protein 1A##AK301243|HSPA1A|3303|heat shock 70kDa protein 1A##AB209818|HSPA1A|3303|heat shock 70kDa protein 1A##BC002453|HSPA1A|3303|heat shock 70kDa protein 1A##BC017660|C6orf48|50854|chromosome 6 open reading frame 48##AK311989|C6orf48|50854|chromosome 6 open reading frame 48##BC066330|C6orf48|50854|chromosome 6 open reading frame 48##NM_001040437|C6orf48|50854|chromosome 6 open reading frame 48##NM_001040438|C6orf48|50854|chromosome 6 open reading frame 48##AJ249731|C6orf48|50854|chromosome 6 open reading frame 48##AJ249732|C6orf48|50854|chromosome 6 open reading frame 48##BC000706|C6orf48|50854|chromosome 6 open reading frame 48##BT007334|C6orf48|50854|chromosome 6 open reading frame 48##BT007206|NEU1|4758|sialidase 1 (lysosomal sialidase)##CR456717|NEU1|4758|sialidase 1 (lysosomal sialidase)##CR541916|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ890716|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ892186|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ893896|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ895380|NEU1|4758|sialidase 1 (lysosomal sialidase)##AB209011|NEU1|4758|sialidase 1 (lysosomal sialidase)##BC011900|NEU1|4758|sialidase 1 (lysosomal sialidase)##U84246|NEU1|4758|sialidase 1 (lysosomal sialidase)##AK313006|NEU1|4758|sialidase 1 (lysosomal sialidase)##AK290966|NEU1|4758|sialidase 1 (lysosomal sialidase)##X78687|NEU1|4758|sialidase 1 (lysosomal sialidase)##BC000722|NEU1|4758|sialidase 1 (lysosomal sialidase)##AF040958|NEU1|4758|sialidase 1 (lysosomal sialidase)##NM_000434|NEU1|4758|sialidase 1 (lysosomal sialidase)	1.689603	0.801063	CTCF.p2:0:0.801	denovo_WM_7:20:0.437	denovo_WM_7:35:0.572
chr19	54975119	54975299	reg1001106.p1	11.874	+	BC015921 NM_198988	-316	-	AL833879 TSC_hg19_v1_chr19_+_54965768	-9497	+	TSC_hg19_v1_chr19_+_54960396 AL834532 BC028048	-14803	+	BC065910 TSC_hg19_v1_chr19_-_54984370 BC024327 NM_145057	9172	-	NM_002288 NM_021270 BC057790 AF013250 BC069366 CU686777 HQ448404 EF174570	38864	+	AK310088 TSC_hg19_v1_chr19_+_55084486	109276	+	BC015921|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_198988|LENG9|94059|leukocyte receptor cluster (LRC) member 9##AL834532|LENG8|114823|leukocyte receptor cluster (LRC) member 8##BC028048|LENG8|114823|leukocyte receptor cluster (LRC) member 8##BC065910|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC024327|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##NM_145057|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##NM_002288|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##NM_021270|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC057790|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AF013250|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC069366|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##HQ448404|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##EF174570|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AK310088|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2	0.99901	0.0	denovo_WM_7:3:0.457	denovo_WM_7:4:0.457
chr19	55470404	55470536	reg1001184.p2	11.873	+	BC109124 BC109125 AY154462 NM_001127255 NM_139176 NM_206828 AK298630	-11594	-	AJ001383 NM_001145457 NM_001145458 NM_001242356 NM_001242357 NM_004829 BC030265 BC064806 AJ006121 AJ006122 AJ006123 AY346373 CU687946	-52944	+	NM_002000 NM_133269 NM_133271 NM_133272 NM_133273 NM_133274 NM_133277 NM_133278 NM_133279 AK290922 BC027953 U56236 U56237 U43677 U43774 DQ890935 DQ894098 AB590300 CU693344 D87853 D87854 D87855 D87856 D87857 D87858 D87859 D87860 D87861 D87862 DQ075334 DQ075335 DQ075336 DQ075337 DQ075338 DQ075339 S82919 X92558 X92559 X92560 X92561 X92562	-84824	+	NM_001174081	6181	+	NM_001174082 NM_001174083 NM_017852 AK302989 BC039269 TSC_hg19_v1_chr19_+_55477768 AF310106 AK000517 AK292681 AB209300 BC003592 AF298547 AK025952 AK223253 AK223269 AF464764	7290	+	AB035073 BC104832 BC111963 AB043819 AB043820 AB043821 BC069485 NM_001083899 NM_016363	79151	-	BC109124|NLRP7|199713|NLR family, pyrin domain containing 7##BC109125|NLRP7|199713|NLR family, pyrin domain containing 7##AY154462|NLRP7|199713|NLR family, pyrin domain containing 7##NM_001127255|NLRP7|199713|NLR family, pyrin domain containing 7##NM_139176|NLRP7|199713|NLR family, pyrin domain containing 7##NM_206828|NLRP7|199713|NLR family, pyrin domain containing 7##AK298630|NLRP7|199713|NLR family, pyrin domain containing 7##AJ001383|NCR1|9437|natural cytotoxicity triggering receptor 1##NM_001145457|NCR1|9437|natural cytotoxicity triggering receptor 1##NM_001145458|NCR1|9437|natural cytotoxicity triggering receptor 1##NM_001242356|NCR1|9437|natural cytotoxicity triggering receptor 1##NM_001242357|NCR1|9437|natural cytotoxicity triggering receptor 1##NM_004829|NCR1|9437|natural cytotoxicity triggering receptor 1##BC064806|NCR1|9437|natural cytotoxicity triggering receptor 1##AJ006121|NCR1|9437|natural cytotoxicity triggering receptor 1##AJ006122|NCR1|9437|natural cytotoxicity triggering receptor 1##AJ006123|NCR1|9437|natural cytotoxicity triggering receptor 1##AY346373|NCR1|9437|natural cytotoxicity triggering receptor 1##NM_002000|FCAR|2204|Fc fragment of IgA, receptor for##NM_133269|FCAR|2204|Fc fragment of IgA, receptor for##NM_133271|FCAR|2204|Fc fragment of IgA, receptor for##NM_133272|FCAR|2204|Fc fragment of IgA, receptor for##NM_133273|FCAR|2204|Fc fragment of IgA, receptor for##NM_133274|FCAR|2204|Fc fragment of IgA, receptor for##NM_133277|FCAR|2204|Fc fragment of IgA, receptor for##NM_133278|FCAR|2204|Fc fragment of IgA, receptor for##NM_133279|FCAR|2204|Fc fragment of IgA, receptor for##AK290922|FCAR|2204|Fc fragment of IgA, receptor for##BC027953|FCAR|2204|Fc fragment of IgA, receptor for##U56236|FCAR|2204|Fc fragment of IgA, receptor for##U56237|FCAR|2204|Fc fragment of IgA, receptor for##U43677|FCAR|2204|Fc fragment of IgA, receptor for##U43774|FCAR|2204|Fc fragment of IgA, receptor for##DQ890935|FCAR|2204|Fc fragment of IgA, receptor for##DQ894098|FCAR|2204|Fc fragment of IgA, receptor for##D87853|FCAR|2204|Fc fragment of IgA, receptor for##D87854|FCAR|2204|Fc fragment of IgA, receptor for##D87855|FCAR|2204|Fc fragment of IgA, receptor for##D87856|FCAR|2204|Fc fragment of IgA, receptor for##D87857|FCAR|2204|Fc fragment of IgA, receptor for##D87858|FCAR|2204|Fc fragment of IgA, receptor for##D87859|FCAR|2204|Fc fragment of IgA, receptor for##D87860|FCAR|2204|Fc fragment of IgA, receptor for##D87861|FCAR|2204|Fc fragment of IgA, receptor for##D87862|FCAR|2204|Fc fragment of IgA, receptor for##DQ075334|FCAR|2204|Fc fragment of IgA, receptor for##DQ075335|FCAR|2204|Fc fragment of IgA, receptor for##DQ075336|FCAR|2204|Fc fragment of IgA, receptor for##DQ075337|FCAR|2204|Fc fragment of IgA, receptor for##DQ075338|FCAR|2204|Fc fragment of IgA, receptor for##DQ075339|FCAR|2204|Fc fragment of IgA, receptor for##S82919|FCAR|2204|Fc fragment of IgA, receptor for##X92558|FCAR|2204|Fc fragment of IgA, receptor for##X92559|FCAR|2204|Fc fragment of IgA, receptor for##X92560|FCAR|2204|Fc fragment of IgA, receptor for##X92561|FCAR|2204|Fc fragment of IgA, receptor for##X92562|FCAR|2204|Fc fragment of IgA, receptor for##NM_001174081|NLRP2|55655|NLR family, pyrin domain containing 2##NM_001174082|NLRP2|55655|NLR family, pyrin domain containing 2##NM_001174083|NLRP2|55655|NLR family, pyrin domain containing 2##NM_017852|NLRP2|55655|NLR family, pyrin domain containing 2##AK302989|NLRP2|55655|NLR family, pyrin domain containing 2##BC039269|NLRP2|55655|NLR family, pyrin domain containing 2##AF310106|NLRP2|55655|NLR family, pyrin domain containing 2##AK000517|NLRP2|55655|NLR family, pyrin domain containing 2##AK292681|NLRP2|55655|NLR family, pyrin domain containing 2##AB209300|NLRP2|55655|NLR family, pyrin domain containing 2##BC003592|NLRP2|55655|NLR family, pyrin domain containing 2##AF298547|NLRP2|55655|NLR family, pyrin domain containing 2##AK025952|NLRP2|55655|NLR family, pyrin domain containing 2##AK223253|NLRP2|55655|NLR family, pyrin domain containing 2##AK223269|NLRP2|55655|NLR family, pyrin domain containing 2##AF464764|NLRP2|55655|NLR family, pyrin domain containing 2##AB035073|GP6|51206|glycoprotein VI (platelet)##BC104832|GP6|51206|glycoprotein VI (platelet)##BC111963|GP6|51206|glycoprotein VI (platelet)##AB043819|GP6|51206|glycoprotein VI (platelet)##AB043820|GP6|51206|glycoprotein VI (platelet)##AB043821|GP6|51206|glycoprotein VI (platelet)##BC069485|GP6|51206|glycoprotein VI (platelet)##NM_001083899|GP6|51206|glycoprotein VI (platelet)##NM_016363|GP6|51206|glycoprotein VI (platelet)	1.962278	0.0	denovo_WM_7:30:0.915	denovo_WM_7:47:0.817
chr11	78021574	78021699	reg1000802.p1	11.870	+	AK056231 NM_020798 AK301048 AK307875 TSC_hg19_v1_chr11_+_77899953	-121711	+	TSC_hg19_v1_chr11_-_77899673 AK300320 BC036058 NM_001029859 AK095233	-121980	-	TSC_hg19_v1_chr11_+_77850827 AK124949	-170776	+	AB011143 BC152459 NM_012296	31289	-	AB018413 BC131711 TSC_hg19_v1_chr11_-_78128848	107170	-	TSC_hg19_v1_chr11_-_78128866 NM_080491	107240	-	AK056231|USP35|57558|ubiquitin specific peptidase 35##NM_020798|USP35|57558|ubiquitin specific peptidase 35##AK301048|USP35|57558|ubiquitin specific peptidase 35##AK307875|USP35|57558|ubiquitin specific peptidase 35##AK300320|KCTD21|283219|potassium channel tetramerisation domain containing 21##BC036058|KCTD21|283219|potassium channel tetramerisation domain containing 21##NM_001029859|KCTD21|283219|potassium channel tetramerisation domain containing 21##AK095233|KCTD21|283219|potassium channel tetramerisation domain containing 21##AK124949|LOC100289388|100289388|uncharacterized LOC100289388##AB011143|GAB2|9846|GRB2-associated binding protein 2##BC152459|GAB2|9846|GRB2-associated binding protein 2##NM_012296|GAB2|9846|GRB2-associated binding protein 2##AB018413|GAB2|9846|GRB2-associated binding protein 2##BC131711|GAB2|9846|GRB2-associated binding protein 2##NM_080491|GAB2|9846|GRB2-associated binding protein 2	1.47217	0.0	denovo_WM_7:-50:0.237	denovo_WM_7:-67:0.272	denovo_WM_7:-68:0.317	denovo_WM_7:-69:0.339
chr5	172204625	172204776	reg1001186.p1	11.870	+	TSC_hg19_v1_chr5_-_172198199 X68277 AK300487 AK298047 AK298658 AK304475 AK316321 BC022463 NM_004417 AK299391	-6489	-	AF275799 TSC_hg19_v1_chr5_-_172083715	-121057	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	-136447	+	TSC_hg19_v1_chr5_+_172261253 NM_001031711 AB033007 BC012766 BC014490 AB463606	56618	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	181748	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	206082	+	X68277|DUSP1|1843|dual specificity phosphatase 1##AK300487|DUSP1|1843|dual specificity phosphatase 1##AK298047|DUSP1|1843|dual specificity phosphatase 1##AK298658|DUSP1|1843|dual specificity phosphatase 1##AK304475|DUSP1|1843|dual specificity phosphatase 1##AK316321|DUSP1|1843|dual specificity phosphatase 1##BC022463|DUSP1|1843|dual specificity phosphatase 1##NM_004417|DUSP1|1843|dual specificity phosphatase 1##AK299391|DUSP1|1843|dual specificity phosphatase 1##GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001031711|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##AB033007|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC012766|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC014490|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1	0.122859	0.0	
chr5	126128182	126128289	reg1001020.p1	11.869	+	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-15111	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-15353	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	-15404	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	237940	-	NM_178450	238204	-	AK126569 NM_001164478 NM_001164479	280942	-	DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63	0.997863	0.0	
chr3	97951466	97951643	reg1001167.p2	11.868	+	NM_001005515	-64011	+	BC136984 NM_001005514	-83355	+	AB528772 NM_001005338	-100014	+	BC137523 BC137524 NM_001005479	31553	+	NM_001005482	50177	+	NM_001005517	121143	+	NM_001005515|OR5H15|403274|olfactory receptor, family 5, subfamily H, member 15##BC136984|OR5H14|403273|olfactory receptor, family 5, subfamily H, member 14##NM_001005514|OR5H14|403273|olfactory receptor, family 5, subfamily H, member 14##NM_001005338|OR5H1|26341|olfactory receptor, family 5, subfamily H, member 1##BC137523|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##BC137524|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##NM_001005479|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##NM_001005482|OR5H2|79310|olfactory receptor, family 5, subfamily H, member 2##NM_001005517|OR5K4|403278|olfactory receptor, family 5, subfamily K, member 4	1.728964	0.0	denovo_WM_7:1:0.402	denovo_WM_7:2:0.357	denovo_WM_7:17:0.671
chr7	63765485	63765663	reg1001181.p1	11.867	+	BC033523 NM_153363	-76723	+	NM_001159524	-97994	+	NM_001159522	-259754	+	NM_001170905	7611	+	TSC_hg19_v1_chr7_+_63774393 BC031335 AK301806	8818	+	AB529206 EU832109 EU832203 TSC_hg19_v1_chr7_-_64023424 AK131240	257804	-	BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679##NM_001159524|ZNF735|730291|zinc finger protein 735##NM_001159522|ZNF727|442319|zinc finger protein 727##NM_001170905|ZNF736|728927|zinc finger protein 736##BC031335|ZNF736|728927|zinc finger protein 736##AK301806|ZNF736|728927|zinc finger protein 736##EU832109|ZNF680|340252|zinc finger protein 680##EU832203|ZNF680|340252|zinc finger protein 680##AK131240|ZNF680|340252|zinc finger protein 680	0.994398	0.0	denovo_WM_7:-29:0.481
chr11	120296375	120296537	reg1001005.p1	11.865	+	BC063117 NM_001198665 NM_015313	-88839	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	-89352	+	AK096207 AK304086 TSC_hg19_v1_chr11_+_120196007 AK289680 AK294713 BC015232	-100438	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	86009	+	AB384776 NM_014619 S67803	234571	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	598354	+	BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK096207|TMEM136|219902|transmembrane protein 136##AK304086|TMEM136|219902|transmembrane protein 136##AK289680|TMEM136|219902|transmembrane protein 136##AK294713|TMEM136|219902|transmembrane protein 136##BC015232|TMEM136|219902|transmembrane protein 136##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like	0.999751	0.0	denovo_WM_7:21:0.295	denovo_WM_7:22:0.295	denovo_WM_7:23:0.295
chr5	175779096	175779276	reg1001176.p2	11.865	+	TSC_hg19_v1_chr5_+_175665384 BC037298 BC066980 NM_198567 AK299336	-113796	+	BC028606 NM_001079529	-267308	+	NM_032361	-383642	-	TSC_hg19_v1_chr5_-_175788768 BC006316 BC010448 BC012848 AK024675 AK225073 AK315428 BC017097 AL390217 BX648859 NM_001079684 NM_001079685 NM_020444	9577	-	TSC_hg19_v1_chr5_+_175792493 BC059361 NM_173664 AK096568	13303	+	HQ257929 AY561704 CR457169 NM_016391 BC032424 TSC_hg19_v1_chr5_-_175815607 BC040106 AK303281 AF161460 AK300883 BC019331	36463	-	BC037298|C5orf25|375484|chromosome 5 open reading frame 25##BC066980|C5orf25|375484|chromosome 5 open reading frame 25##NM_198567|C5orf25|375484|chromosome 5 open reading frame 25##AK299336|C5orf25|375484|chromosome 5 open reading frame 25##BC028606|FAM153B|202134|family with sequence similarity 153, member B##NM_001079529|FAM153B|202134|family with sequence similarity 153, member B##NM_032361|THOC3|84321|THO complex 3##BC006316|KIAA1191|57179|KIAA1191##BC010448|KIAA1191|57179|KIAA1191##BC012848|KIAA1191|57179|KIAA1191##AK315428|KIAA1191|57179|KIAA1191##BC017097|KIAA1191|57179|KIAA1191##AL390217|KIAA1191|57179|KIAA1191##BX648859|KIAA1191|57179|KIAA1191##NM_001079684|KIAA1191|57179|KIAA1191##NM_001079685|KIAA1191|57179|KIAA1191##NM_020444|KIAA1191|57179|KIAA1191##BC059361|ARL10|285598|ADP-ribosylation factor-like 10##NM_173664|ARL10|285598|ADP-ribosylation factor-like 10##HQ257929|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##AY561704|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##CR457169|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##NM_016391|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##BC032424|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##BC040106|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##AK303281|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##AF161460|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##AK300883|NOP16|51491|NOP16 nucleolar protein homolog (yeast)##BC019331|NOP16|51491|NOP16 nucleolar protein homolog (yeast)	1.98711	0.0	denovo_WM_7:-4:0.929	denovo_WM_7:-19:0.533	denovo_WM_7:-20:0.395
chr7	45047558	45047713	reg1001225.p2	11.865	+	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	-7781	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-21395	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-28938	-	NM_001029835 AK298671 AK303216 AK303534	19616	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	80864	-	BC017235 BC014918 AK022575 AK222943 TSC_hg19_v1_chr7_-_45151294	103648	-	AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing##BC017235|TBRG4|9238|transforming growth factor beta regulator 4##BC014918|TBRG4|9238|transforming growth factor beta regulator 4##AK022575|TBRG4|9238|transforming growth factor beta regulator 4##AK222943|TBRG4|9238|transforming growth factor beta regulator 4	0.996394	0.0	
chr2	111966562	111966742	reg1000500.p1	11.863	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-88165	+	AK300513 NM_001142807 BC022268	-476473	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-530830	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	674974	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	675109	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	689533	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.0	0.0	
chr17	17638299	17638395	reg1000873.p1	11.862	+	TSC_hg19_v1_chr17_+_17608164 AF147359	-30149	+	TSC_hg19_v1_chr17_+_17584772 AB058723 AY172136 NM_030665	-53562	+	TSC_hg19_v1_chr17_-_17495007 CU690728 AF044214 AF113126 BC000557 BC050593 NM_148172 AK302251	-143372	-	AB373959 TSC_hg19_v1_chr17_-_17726919 S66167 AK091131 AK293795 AK294800 AK297113	88557	-	TSC_hg19_v1_chr17_-_17740301 U00968 BC063281	101948	-	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	101977	-	AB058723|RAI1|10743|retinoic acid induced 1##AY172136|RAI1|10743|retinoic acid induced 1##NM_030665|RAI1|10743|retinoic acid induced 1##AF044214|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AF113126|PEMT|10400|phosphatidylethanolamine N-methyltransferase##BC000557|PEMT|10400|phosphatidylethanolamine N-methyltransferase##BC050593|PEMT|10400|phosphatidylethanolamine N-methyltransferase##NM_148172|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AK302251|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AB373959|SREBF1|6720|sterol regulatory element binding transcription factor 1##S66167|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK091131|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK293795|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK294800|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK297113|SREBF1|6720|sterol regulatory element binding transcription factor 1##U00968|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC063281|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1	0.986182	0.0	denovo_WM_7:30:0.931
chr20	34199666	34199779	reg1000915.p1	11.859	+	BC029951 AY461812 TSC_hg19_v1_chr20_-_34195432	-4300	-	TSC_hg19_v1_chr20_+_34129833 CU679479 CU680742 AF091085	-69877	+	AK074550 BC009765 TSC_hg19_v1_chr20_+_34129829 AK096484 AK300916	-69892	+	TSC_hg19_v1_chr20_+_34203752 AF262992 NM_003116 BC143783 AB464242	4113	+	NM_003915	42108	-	TSC_hg19_v1_chr20_-_34243133 AB385382 DQ893493 DQ896437	43459	-	BC029951|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AY461812|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AF091085|ERGIC3|51614|ERGIC and golgi 3##AK074550|ERGIC3|51614|ERGIC and golgi 3##BC009765|ERGIC3|51614|ERGIC and golgi 3##AK096484|ERGIC3|51614|ERGIC and golgi 3##AK300916|ERGIC3|51614|ERGIC and golgi 3##AF262992|SPAG4|6676|sperm associated antigen 4##NM_003116|SPAG4|6676|sperm associated antigen 4##BC143783|SPAG4|6676|sperm associated antigen 4##NM_003915|CPNE1|8904|copine I##DQ893493|RBM12|10137|RNA binding motif protein 12##DQ896437|RBM12|10137|RNA binding motif protein 12	0.999003	0.0	denovo_WM_7:40:0.479	denovo_WM_7:41:0.427
chr13	111837282	111837418	reg1000879.p1	11.855	+	TSC_hg19_v1_chr13_+_111806070 D63476	-31272	+	TSC_hg19_v1_chr13_+_111806041 AB177849 NM_003899	-31299	+	AK300157 TSC_hg19_v1_chr13_+_111806035	-31314	+	NM_001113513 BC050521	1836	+	AK300272 TSC_hg19_v1_chr13_+_111855425	18072	+	BC029889 NM_152324	135664	+	D63476|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AB177849|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_003899|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AK300157|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_001113513|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##BC050521|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AK300272|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##BC029889|C13orf16|121793|chromosome 13 open reading frame 16##NM_152324|C13orf16|121793|chromosome 13 open reading frame 16	0.753572	0.0	denovo_WM_7:14:0.463
chr2	25433329	25433460	reg1000751.p2	11.852	+	NM_000939 NM_001035256	-41836	-	TSC_hg19_v1_chr2_+_25264954 NM_014971 AB023170	-168417	+	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	-238527	-	TSC_hg19_v1_chr2_-_25466801 BC018214	33414	-	TSC_hg19_v1_chr2_-_25467080 BC023612	33741	-	TSC_hg19_v1_chr2_-_25468920 AK025230	35584	-	NM_000939|POMC|5443|proopiomelanocortin##NM_001035256|POMC|5443|proopiomelanocortin##NM_014971|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AB023170|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC018214|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.995245	0.0	
chr2	97523923	97524103	reg1000353.p1	11.851	+	TSC_hg19_v1_chr2_-_97523744 AB528054 CU689148 AF151034 BC031303 AB209367 AK312193 NM_016466	-271	-	AF492401 AY196212 BC107056 AK057011 AK092564 AX747600 NM_144994	-14268	-	TSC_hg19_v1_chr2_+_97482006 BC037272 AK126847 NM_017623 NM_199078 BC007199 AF216965 AK000025 CU675553	-41531	+	TSC_hg19_v1_chr2_-_97535634 BC109104 BC109103	11618	-	TSC_hg19_v1_chr2_-_97535818 AY358842 NM_017789	11748	-	AF151068 NM_001172667	36863	-	AF151034|ANKRD39|51239|ankyrin repeat domain 39##BC031303|ANKRD39|51239|ankyrin repeat domain 39##AK312193|ANKRD39|51239|ankyrin repeat domain 39##NM_016466|ANKRD39|51239|ankyrin repeat domain 39##AF492401|ANKRD23|200539|ankyrin repeat domain 23##AY196212|ANKRD23|200539|ankyrin repeat domain 23##BC107056|ANKRD23|200539|ankyrin repeat domain 23##AK057011|ANKRD23|200539|ankyrin repeat domain 23##AK092564|ANKRD23|200539|ankyrin repeat domain 23##NM_144994|ANKRD23|200539|ankyrin repeat domain 23##BC037272|CNNM3|26505|cyclin M3##AK126847|CNNM3|26505|cyclin M3##NM_017623|CNNM3|26505|cyclin M3##NM_199078|CNNM3|26505|cyclin M3##BC007199|CNNM3|26505|cyclin M3##AF216965|CNNM3|26505|cyclin M3##AK000025|CNNM3|26505|cyclin M3##BC109104|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##BC109103|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##AY358842|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##NM_017789|SEMA4C|54910|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C##AF151068|FAM178B|51252|family with sequence similarity 178, member B##NM_001172667|FAM178B|51252|family with sequence similarity 178, member B	0.0	0.0	
chr19	11681100	11681234	reg1000922.p1	11.846	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-11134	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-31508	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-41210	-	X14618 TSC_hg19_v1_chr19_-_11688461	7284	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	7323	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	7363	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.995371	0.0	
chr6_dbb_hap3	3083418	3083563	reg1001165.p1	11.842	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.689603	0.801063	CTCF.p2:1:0.801	denovo_WM_7:21:0.437	denovo_WM_7:36:0.572
chr10	17711592	17711772	reg1001032.p2	11.838	+	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	-25452	+	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	-52309	-	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	-215317	-	NM_001098844 BC157856	82572	+	AK308132 AK308167 BC142642 J05550 NM_002438 X55635 BC146838 DQ663787	139721	+	NM_001098844 BC157856	329539	+	NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##BC142642|MRC1|4360|mannose receptor, C type 1##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236	1.055927	0.0	denovo_WM_7:23:0.430	denovo_WM_7:25:0.240
chr12	121974502	121974653	reg1001022.p2	11.837	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-69503	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-136613	+	AK025614 NM_001137559	-182566	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	43682	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	44337	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	90066	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	0.989083	0.039855	denovo_WM_7:-4:0.826
chr8	99083467	99083626	reg1001153.p2	11.835	+	AK096872 NM_001170806 NM_173549 BC062359	-6769	+	BC095426 TSC_hg19_v1_chr8_-_99057774 AK312102 D28438 AK308890 NM_000989	-25750	-	L05095 TSC_hg19_v1_chr8_-_99057755	-25793	-	CR456844 CR541652 DQ892797 DQ896044 TSC_hg19_v1_chr8_-_99129361	45797	-	BC010280 TSC_hg19_v1_chr8_-_99129395 BC093059 BC012592 NM_005836 X95384	45855	-	TSC_hg19_v1_chr8_+_99129543 NM_001145860 NM_001145861 X99302 AK291434	45992	+	AK096872|C8orf47|203111|chromosome 8 open reading frame 47##NM_001170806|C8orf47|203111|chromosome 8 open reading frame 47##NM_173549|C8orf47|203111|chromosome 8 open reading frame 47##BC062359|C8orf47|203111|chromosome 8 open reading frame 47##BC095426|RPL30|6156|ribosomal protein L30##AK312102|RPL30|6156|ribosomal protein L30##D28438|RPL30|6156|ribosomal protein L30##AK308890|RPL30|6156|ribosomal protein L30##NM_000989|RPL30|6156|ribosomal protein L30##L05095|RPL30|6156|ribosomal protein L30##CR456844|HRSP12|10247|heat-responsive protein 12##CR541652|HRSP12|10247|heat-responsive protein 12##DQ892797|HRSP12|10247|heat-responsive protein 12##DQ896044|HRSP12|10247|heat-responsive protein 12##BC010280|HRSP12|10247|heat-responsive protein 12##BC093059|HRSP12|10247|heat-responsive protein 12##BC012592|HRSP12|10247|heat-responsive protein 12##NM_005836|HRSP12|10247|heat-responsive protein 12##X95384|HRSP12|10247|heat-responsive protein 12##NM_001145860|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145861|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##X99302|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##AK291434|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	0.996463	0.0	denovo_WM_7:-31:0.471	denovo_WM_7:-32:0.465
chr5	125951147	125951303	reg1000940.p2	11.833	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-14593	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-20369	-	NM_001146322 AK303857	-150409	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	16190	+	NM_005573 BC052951	161090	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	161606	+	AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001146322|GRAMD3|65983|GRAM domain containing 3##AK303857|GRAMD3|65983|GRAM domain containing 3##BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1	0.999254	0.012249	denovo_WM_7:-13:0.239	denovo_WM_7:-14:0.239	denovo_WM_7:-15:0.239	denovo_WM_7:-16:0.239
chr1	167637491	167637643	reg1001507.p1	11.831	+	TSC_hg19_v1_chr1_+_167599557 AL137762 BC101536 BC101562 BC143428	-37998	+	AF545852 TSC_hg19_v1_chr1_+_167599495 NM_052862 AK130798	-38154	+	TSC_hg19_v1_chr1_-_167523043 NM_003851	-114504	-	TSC_hg19_v1_chr1_+_167691226 NM_001146191 NM_003953 NM_024569 AK297112 AK075334 AK307250 AK291249 AY359019 AF181660 AF478447 BC000984 BC007881 AF095727 AF087020 AF092425 AF095726 AK315546 AB527648 AF239756 BT019542 CR542160 HQ447352	53761	+	BC117366 BC117372 AF176813 AF299350 AF331033 AK310395 AK310531 AK302884 NM_001167749 NM_018417	245780	-	AB528078 AM393085 CR407632 CR533473 TSC_hg19_v1_chr1_-_167905197 BC104157 BC104158	267575	-	AL137762|RCSD1|92241|RCSD domain containing 1##BC101536|RCSD1|92241|RCSD domain containing 1##BC101562|RCSD1|92241|RCSD domain containing 1##BC143428|RCSD1|92241|RCSD domain containing 1##AF545852|RCSD1|92241|RCSD domain containing 1##NM_052862|RCSD1|92241|RCSD domain containing 1##NM_003851|CREG1|8804|cellular repressor of E1A-stimulated genes 1##NM_001146191|MPZL1|9019|myelin protein zero-like 1##NM_003953|MPZL1|9019|myelin protein zero-like 1##NM_024569|MPZL1|9019|myelin protein zero-like 1##AK297112|MPZL1|9019|myelin protein zero-like 1##AK075334|MPZL1|9019|myelin protein zero-like 1##AK307250|MPZL1|9019|myelin protein zero-like 1##AK291249|MPZL1|9019|myelin protein zero-like 1##AY359019|MPZL1|9019|myelin protein zero-like 1##AF181660|MPZL1|9019|myelin protein zero-like 1##AF478447|MPZL1|9019|myelin protein zero-like 1##BC000984|MPZL1|9019|myelin protein zero-like 1##BC007881|MPZL1|9019|myelin protein zero-like 1##AF095727|MPZL1|9019|myelin protein zero-like 1##AF087020|MPZL1|9019|myelin protein zero-like 1##AF092425|MPZL1|9019|myelin protein zero-like 1##AF095726|MPZL1|9019|myelin protein zero-like 1##AK315546|MPZL1|9019|myelin protein zero-like 1##AF239756|MPZL1|9019|myelin protein zero-like 1##BT019542|MPZL1|9019|myelin protein zero-like 1##CR542160|MPZL1|9019|myelin protein zero-like 1##HQ447352|MPZL1|9019|myelin protein zero-like 1##BC117366|ADCY10|55811|adenylate cyclase 10 (soluble)##BC117372|ADCY10|55811|adenylate cyclase 10 (soluble)##AF176813|ADCY10|55811|adenylate cyclase 10 (soluble)##AF299350|ADCY10|55811|adenylate cyclase 10 (soluble)##AF331033|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310395|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310531|ADCY10|55811|adenylate cyclase 10 (soluble)##AK302884|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_001167749|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_018417|ADCY10|55811|adenylate cyclase 10 (soluble)##AM393085|BRP44|25874|brain protein 44##CR407632|BRP44|25874|brain protein 44##CR533473|BRP44|25874|brain protein 44##BC104157|BRP44|25874|brain protein 44##BC104158|BRP44|25874|brain protein 44	0.965444	0.0	denovo_WM_7:-36:0.513	denovo_WM_7:-37:0.400
chr16	69157978	69158118	reg1001443.p1	11.831	+	AF234839 NM_005329	-16606	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	-17908	+	AK291400 NM_001199280	-18582	+	TSC_hg19_v1_chr16_-_69166063 NM_001040146	8048	-	TSC_hg19_v1_chr16_-_69166427 BC018700	8389	-	TSC_hg19_v1_chr16_-_69166474 AF525164 AK000407	8424	-	AF234839|HAS3|3038|hyaluronan synthase 3##NM_005329|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_001040146|CHTF8|54921|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)##BC018700|CHTF8|54921|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)##AF525164|CHTF8|54921|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)##AK000407|CHTF8|54921|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	0.991315	0.991377	CTCF.p2:17:0.991	denovo_WM_7:-26:0.309	denovo_WM_7:-27:0.620
chr6	25618377	25618550	reg1001210.p1	11.831	+	TSC_hg19_v1_chr6_-_25571218 Y10205	-47205	-	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	-338569	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	-338805	+	AK289477 NM_006998 BC000336 BC003036 Y16752	33960	+	CU687518 BC062211 NM_170745	108308	-	AK312055 AB590704 BC066238 BC066239 BC066240 BC066241 BC066242 BC066243 NM_170610	108607	+	BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##AK289477|SCGN|10590|secretagogin, EF-hand calcium binding protein##NM_006998|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC000336|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC003036|SCGN|10590|secretagogin, EF-hand calcium binding protein##Y16752|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC062211|HIST1H2AA|221613|histone cluster 1, H2aa##NM_170745|HIST1H2AA|221613|histone cluster 1, H2aa##AK312055|HIST1H2BA|255626|histone cluster 1, H2ba##BC066238|HIST1H2BA|255626|histone cluster 1, H2ba##BC066239|HIST1H2BA|255626|histone cluster 1, H2ba##BC066240|HIST1H2BA|255626|histone cluster 1, H2ba##BC066241|HIST1H2BA|255626|histone cluster 1, H2ba##BC066242|HIST1H2BA|255626|histone cluster 1, H2ba##BC066243|HIST1H2BA|255626|histone cluster 1, H2ba##NM_170610|HIST1H2BA|255626|histone cluster 1, H2ba	0.998048	0.0	denovo_WM_7:32:0.930
chr3	123237819	123237963	reg1001002.p1	11.817	+	AB527359 NM_183357	-70500	-	AK303070 NM_001199642	-102703	-	NM_012430 TSC_hg19_v1_chr3_+_122920787 AK315771 AF100749	-317101	+	TSC_hg19_v1_chr3_-_123303927 CU687458 AK289983 NM_198402 AK125375 BC060839 AY191814 BC049369	66042	-	BC113458 BC113456 BC100761 BC100762 BC100763 AF096773 AF096774 AF096775 AK314412 TSC_hg19_v1_chr3_-_123339352 BC017811 BC107783 Y09530 BC064420 AK314443	101393	-	TSC_hg19_v1_chr3_-_123339426 NM_053031 NM_053032	101585	-	NM_183357|ADCY5|111|adenylate cyclase 5##AK303070|ADCY5|111|adenylate cyclase 5##NM_001199642|ADCY5|111|adenylate cyclase 5##NM_012430|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK315771|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AF100749|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK289983|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##NM_198402|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##BC060839|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##AY191814|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##BC049369|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##BC113458|MYLK|4638|myosin light chain kinase##BC113456|MYLK|4638|myosin light chain kinase##BC100761|MYLK|4638|myosin light chain kinase##BC100762|MYLK|4638|myosin light chain kinase##BC100763|MYLK|4638|myosin light chain kinase##AF096773|MYLK|4638|myosin light chain kinase##AF096774|MYLK|4638|myosin light chain kinase##AF096775|MYLK|4638|myosin light chain kinase##AK314412|MYLK|4638|myosin light chain kinase##BC017811|MYLK|4638|myosin light chain kinase##BC107783|MYLK|4638|myosin light chain kinase##Y09530|MYLK|4638|myosin light chain kinase##BC064420|MYLK|4638|myosin light chain kinase##AK314443|MYLK|4638|myosin light chain kinase##NM_053031|MYLK|4638|myosin light chain kinase##NM_053032|MYLK|4638|myosin light chain kinase	1.039419	0.0	
chr6	10534003	10534183	reg1000544.p1	11.810	+	AK307373 NM_145649 AK291767 AK310216 AL832714	-12485	+	AK296737 NM_001042425	-114302	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	-118625	-	NM_001491	21855	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	51921	+	BC016820 NM_001145020	160744	-	AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK296737|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001042425|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52	1.361244	0.0	denovo_WM_7:-51:0.284
chr2	43804571	43804693	reg1001289.p1	11.809	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-350890	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-350902	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-351287	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	18516	-	TSC_hg19_v1_chr2_+_43864411 BC063310	59781	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	59807	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	1.081619	0.742076	CTCF.p2:-8:0.742	denovo_WM_7:20:0.329	denovo_WM_7:39:0.616
chr2	158301347	158301478	reg1001274.p3	11.808	+	L06633 AB528875 CU690346 AF068836 BC036449 TSC_hg19_v1_chr2_-_158300602 AK312753 NM_004288	-848	-	NM_001009959 AK296477	-117256	-	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	-119128	-	TSC_hg19_v1_chr2_-_158454049 AF525679 NM_001111031	152663	-	AB590288 CU692676 DQ895570 EU176205 AF525680 AF525681 AY127050 TSC_hg19_v1_chr2_-_158485239	183786	-	BC022530 NM_001111032 NM_001111033 NM_145259 TSC_hg19_v1_chr2_-_158485400	183985	-	L06633|CYTIP|9595|cytohesin 1 interacting protein##AF068836|CYTIP|9595|cytohesin 1 interacting protein##BC036449|CYTIP|9595|cytohesin 1 interacting protein##AK312753|CYTIP|9595|cytohesin 1 interacting protein##NM_004288|CYTIP|9595|cytohesin 1 interacting protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##AF525679|ACVR1C|130399|activin A receptor, type IC##NM_001111031|ACVR1C|130399|activin A receptor, type IC##DQ895570|ACVR1C|130399|activin A receptor, type IC##EU176205|ACVR1C|130399|activin A receptor, type IC##AF525680|ACVR1C|130399|activin A receptor, type IC##AF525681|ACVR1C|130399|activin A receptor, type IC##AY127050|ACVR1C|130399|activin A receptor, type IC##BC022530|ACVR1C|130399|activin A receptor, type IC##NM_001111032|ACVR1C|130399|activin A receptor, type IC##NM_001111033|ACVR1C|130399|activin A receptor, type IC##NM_145259|ACVR1C|130399|activin A receptor, type IC	0.985542	0.0	denovo_WM_7:-2:0.799
chr3	190987204	190987339	reg1001148.p1	11.808	+	AY398681 AY573933 BC128106 BC128107 NM_198184	-56950	+	NM_001146686	-406807	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	-755394	+	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	59895	+	AK090630 AX746546 NM_198152	61053	-	AY858112 NM_001083308	191680	+	AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##NM_001146686|GMNC|647309|geminin coiled-coil domain containing##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2	1.383505	0.0	denovo_WM_7:9:0.249	denovo_WM_7:26:0.356	denovo_WM_7:28:0.355
chr9	70487319	70487443	reg1001361.p1	11.806	+	NM_001099279 NM_199244	-57651	-	NM_001126334	-308567	-	AL136793 NM_001098805	-1105401	+	CU688346 TSC_hg19_v1_chr9_-_70490092	2700	-	AF265442 TSC_hg19_v1_chr9_-_70490099	2717	-	BC082271 BC069006 AK297912 TSC_hg19_v1_chr9_-_70490116	2731	-	NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##AF265442|CBWD5|220869|COBW domain containing 5##BC082271|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK297912|CBWD3|445571|COBW domain containing 3	0.82941	0.217527	CTCF.p2:-31:0.218	denovo_WM_7:53:0.829
chr6	52262877	52263037	reg1001198.p2	11.802	+	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	-36000	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-113378	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-113437	-	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	22121	+	AK297632 NM_001172420	22847	+	DQ891068 DQ894250 D31762 TSC_hg19_v1_chr6_-_52441798	178801	-	NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ891068|TRAM2|9697|translocation associated membrane protein 2##DQ894250|TRAM2|9697|translocation associated membrane protein 2##D31762|TRAM2|9697|translocation associated membrane protein 2	2.832385	0.0	denovo_WM_7:-11:0.837	denovo_WM_7:36:0.448	denovo_WM_7:56:0.247	denovo_WM_7:57:0.283
chr10	75571739	75571873	reg1001390.p1	11.799	+	TSC_hg19_v1_chr10_-_75571579 BC018681 AK303648 NM_003635	-241	-	BC035711 TSC_hg19_v1_chr10_-_75571357 BC052780	-432	-	BC151206 TSC_hg19_v1_chr10_+_75545421	-26386	+	AB590440 L07044 DQ892365 DQ895574 DQ896692 TSC_hg19_v1_chr10_-_75634275 U66064 AK131199 AK095576 BC034044 AK225771 AK291704 AK301180 NM_001204492 NM_001222 NM_172169 NM_172170 NM_172171 NM_172173	62513	-	NM_001145031 NM_002658 TSC_hg19_v1_chr10_+_75670889 AK297940 AK298560 AK312960	99071	+	BC013575 K03226 M15476 D00244 TSC_hg19_v1_chr10_+_75670948 X02760	99135	+	BC018681|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##AK303648|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##NM_003635|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##BC035711|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##BC151206|KIAA0913|23053|KIAA0913##L07044|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ892365|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ895574|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ896692|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##U66064|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK131199|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK095576|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##BC034044|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK225771|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK291704|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK301180|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001204492|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001222|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172169|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172170|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172171|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172173|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001145031|PLAU|5328|plasminogen activator, urokinase##NM_002658|PLAU|5328|plasminogen activator, urokinase##AK297940|PLAU|5328|plasminogen activator, urokinase##AK298560|PLAU|5328|plasminogen activator, urokinase##AK312960|PLAU|5328|plasminogen activator, urokinase##BC013575|PLAU|5328|plasminogen activator, urokinase##K03226|PLAU|5328|plasminogen activator, urokinase##M15476|PLAU|5328|plasminogen activator, urokinase##D00244|PLAU|5328|plasminogen activator, urokinase##X02760|PLAU|5328|plasminogen activator, urokinase	1.995012	0.0	denovo_WM_7:36:0.249	denovo_WM_7:37:0.213	denovo_WM_7:56:0.214	denovo_WM_7:57:0.249
chr5	55444400	55444577	reg1001243.p2	11.799	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-153725	-	NM_001242636 NM_001242639	-295339	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-297219	+	AK123389 NM_024669	84697	-	NM_005921	666411	+	TSC_hg19_v1_chr5_+_56111375 AK307828	666876	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.892892	0.0	denovo_WM_7:0:0.496	denovo_WM_7:-1:0.205
chr16	12378502	12378619	reg1001115.p2	11.798	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-307987	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-319476	+	NM_001130007	-368042	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	519091	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	519159	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	616908	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	0.994702	0.0	denovo_WM_7:26:0.635	denovo_WM_7:28:0.202
chr4	80994626	80994804	reg1000800.p1	11.796	+	TSC_hg19_v1_chr4_-_80994394 NM_001145794 NM_058172 BC107876	-248	-	TSC_hg19_v1_chr4_-_80994237 AK091721 AX747144	-478	-	AB527650 AY233452 TSC_hg19_v1_chr4_-_80993874 AY040326 BC114374 AB209913	-827	-	AF275815 NM_020226	111708	+	TSC_hg19_v1_chr4_+_81118656 NM_001099403 BC071584 AK292137 BC027929	123939	+	NM_004464 NM_033143 AK312065 TSC_hg19_v1_chr4_+_81187819 AK291962 AF535149 AF171928 M37825 BC131502 BC074858 BC074859 AB016517 AB463636 AF355187	193144	+	NM_001145794|ANTXR2|118429|anthrax toxin receptor 2##NM_058172|ANTXR2|118429|anthrax toxin receptor 2##BC107876|ANTXR2|118429|anthrax toxin receptor 2##AY233452|ANTXR2|118429|anthrax toxin receptor 2##AY040326|ANTXR2|118429|anthrax toxin receptor 2##BC114374|ANTXR2|118429|anthrax toxin receptor 2##AB209913|ANTXR2|118429|anthrax toxin receptor 2##AF275815|PRDM8|56978|PR domain containing 8##NM_020226|PRDM8|56978|PR domain containing 8##NM_001099403|PRDM8|56978|PR domain containing 8##BC071584|PRDM8|56978|PR domain containing 8##AK292137|PRDM8|56978|PR domain containing 8##BC027929|PRDM8|56978|PR domain containing 8##NM_004464|FGF5|2250|fibroblast growth factor 5##NM_033143|FGF5|2250|fibroblast growth factor 5##AK312065|FGF5|2250|fibroblast growth factor 5##AK291962|FGF5|2250|fibroblast growth factor 5##AF535149|FGF5|2250|fibroblast growth factor 5##AF171928|FGF5|2250|fibroblast growth factor 5##M37825|FGF5|2250|fibroblast growth factor 5##BC131502|FGF5|2250|fibroblast growth factor 5##BC074858|FGF5|2250|fibroblast growth factor 5##BC074859|FGF5|2250|fibroblast growth factor 5##AB016517|FGF5|2250|fibroblast growth factor 5##AF355187|FGF5|2250|fibroblast growth factor 5	0.982932	0.0	denovo_WM_7:29:0.458	denovo_WM_7:30:0.458
chr5	98440345	98440484	reg1001510.p1	11.796	+	BC054860 BC117134 NM_001270 AF006513	-178186	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	-335373	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-1921427	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	1430659	+	AF529367 TSC_hg19_v1_chr5_+_99871306	1430856	+	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	1798514	-	BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF529367|FAM174A|345757|family with sequence similarity 174, member A##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	1.045957	0.0	
chrX	18703806	18703923	reg1001180.p1	11.794	+	AB464151 AF014459 DQ426892 NM_000330	-13660	-	BC036091 NM_001037343	-243521	+	BC010966 TSC_hg19_v1_chrX_+_18443727 NM_003159 AK307444 AY217744 Y15057	-260135	+	NM_006240 NM_152224 NM_152226 X97867 AK292235 BC036026	5180	+	TSC_hg19_v1_chrX_-_19002476 NM_000292	298598	-	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	436803	-	AF014459|RS1|6247|retinoschisin 1##DQ426892|RS1|6247|retinoschisin 1##NM_000330|RS1|6247|retinoschisin 1##BC036091|CDKL5|6792|cyclin-dependent kinase-like 5##NM_001037343|CDKL5|6792|cyclin-dependent kinase-like 5##BC010966|CDKL5|6792|cyclin-dependent kinase-like 5##NM_003159|CDKL5|6792|cyclin-dependent kinase-like 5##AK307444|CDKL5|6792|cyclin-dependent kinase-like 5##AY217744|CDKL5|6792|cyclin-dependent kinase-like 5##Y15057|CDKL5|6792|cyclin-dependent kinase-like 5##NM_006240|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152224|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152226|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##X97867|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##AK292235|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##BC036026|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_000292|PHKA2|5256|phosphorylase kinase, alpha 2 (liver)##BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64	1.115283	0.0	denovo_WM_7:-52:0.277
chr13	46956487	46956651	reg1001205.p2	11.791	+	TSC_hg19_v1_chr13_-_46756327 BC053839 M34426 BC010271 AK223305 AK093568 NM_002298	-200177	-	TSC_hg19_v1_chr13_-_46756297 BC007673 AB208984 AK312393	-200261	-	TSC_hg19_v1_chr13_-_46756291 J02923	-200277	-	AK300183 BC032311 BC043488 TSC_hg19_v1_chr13_-_46961376 AK307854	4776	-	TSC_hg19_v1_chr13_-_46961379 AK025215 AK293034	4815	-	NM_025113	5065	-	BC053839|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##M34426|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##BC010271|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AK223305|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##NM_002298|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##BC007673|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AB208984|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AK312393|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##J02923|LCP1|3936|lymphocyte cytosolic protein 1 (L-plastin)##AK300183|KIAA0226L|80183|KIAA0226-like##BC032311|KIAA0226L|80183|KIAA0226-like##BC043488|KIAA0226L|80183|KIAA0226-like##AK307854|KIAA0226L|80183|KIAA0226-like##AK025215|KIAA0226L|80183|KIAA0226-like##AK293034|KIAA0226L|80183|KIAA0226-like##NM_025113|KIAA0226L|80183|KIAA0226-like	0.984517	0.0	denovo_WM_7:7:0.849
chr12	82832261	82832417	reg1001593.p1	11.789	+	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	-80030	+	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	-80163	-	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-679230	-	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	248361	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	248578	+	TSC_hg19_v1_chr12_+_83081158 AK299771 BC093852 BC143378 BC093854 AK315285 AB463319 AM393141	248922	+	NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK299771|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093852|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC143378|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093854|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK315285|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AM393141|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.9939	0.0	denovo_WM_7:-39:0.768
chr12	96795156	96795336	reg1001140.p1	11.789	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-929	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	-1263	-	TSC_hg19_v1_chr12_+_96588254 BC017371	-206979	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	505785	+	BC027605 NM_001135175	505997	+	TSC_hg19_v1_chr12_-_98897622 AK126817	2102381	-	AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK126817|LOC643770|643770|uncharacterized LOC643770	0.567945	0.0	denovo_WM_7:1:0.363
chr2	113339982	113340122	reg1001006.p1	11.788	+	BX647360 BC110833 BC150139 AK294027 TSC_hg19_v1_chr2_+_113300041 AK001678 AK301178 AK022533 BX647683	-40133	+	AK128044 NM_001137604 NM_019014 AK302814	-40501	+	TSC_hg19_v1_chr2_+_113279582 AK126378	-60398	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	1986	+	AK096990 TSC_hg19_v1_chr2_+_113342182	2137	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	63468	+	BX647360|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BC110833|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BC150139|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK294027|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK001678|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK301178|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK022533|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BX647683|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK128044|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##NM_001137604|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##NM_019014|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK302814|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK126378|TTL|150465|tubulin tyrosine ligase##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1	0.998572	0.0	denovo_WM_7:42:0.494	denovo_WM_7:43:0.494
chr4	70036337	70036461	reg1001339.p1	11.787	+	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	-74185	+	NM_001075 NM_001144767	-150287	-	HQ258456 BC130533 AY358727 AY542891 NM_024743	-218906	-	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	44058	-	AF177272 AF177273 AF177274 NM_001207004 NM_053039 AB451456	109818	+	AY529122 DQ895203 AF064200 AF081793 AJ005162 Y00317 BC026264 TSC_hg19_v1_chr4_-_70361624 AK292748 NM_021139	325203	-	AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##HQ258456|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC130533|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY358727|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY542891|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##NM_024743|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AF177272|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177273|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177274|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_001207004|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_053039|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AB451456|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AY529122|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##DQ895203|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AF064200|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AF081793|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AJ005162|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##Y00317|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##BC026264|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AK292748|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##NM_021139|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4	0.983237	0.20708	CTCF.p2:15:0.207	denovo_WM_7:-28:0.962
chr5	71530230	71530386	reg1000856.p1	11.781	+	TSC_hg19_v1_chr5_+_71502701 AK125194	-27545	+	TSC_hg19_v1_chr5_+_71403301 BC017240 NM_005909 BC025240 BC139918 BC150196 BC046114 AK096273 AK308147 BX647077 BC039822 BC108733 BC032516 BC073993 BC056145 BC063669 BC094834 AB463119	-127029	+	NM_004291 BC029882 U16826 CR542216 CU688778 EU831800 EU831877	-515254	+	CU687962 D87453 TSC_hg19_v1_chr5_-_71616067 BC064902 BC011818 AK299412 AK025417 AK309065	85750	-	TSC_hg19_v1_chr5_-_71616075 AK300111 NM_015084	85772	-	AK303776 TSC_hg19_v1_chr5_+_71616202 AK056761 NM_024754 AK298750	85894	+	AK125194|MAP1B|4131|microtubule-associated protein 1B##BC017240|MAP1B|4131|microtubule-associated protein 1B##NM_005909|MAP1B|4131|microtubule-associated protein 1B##BC025240|MAP1B|4131|microtubule-associated protein 1B##BC139918|MAP1B|4131|microtubule-associated protein 1B##BC150196|MAP1B|4131|microtubule-associated protein 1B##BC046114|MAP1B|4131|microtubule-associated protein 1B##AK096273|MAP1B|4131|microtubule-associated protein 1B##AK308147|MAP1B|4131|microtubule-associated protein 1B##BX647077|MAP1B|4131|microtubule-associated protein 1B##BC039822|MAP1B|4131|microtubule-associated protein 1B##BC108733|MAP1B|4131|microtubule-associated protein 1B##BC032516|MAP1B|4131|microtubule-associated protein 1B##BC073993|MAP1B|4131|microtubule-associated protein 1B##BC056145|MAP1B|4131|microtubule-associated protein 1B##BC063669|MAP1B|4131|microtubule-associated protein 1B##BC094834|MAP1B|4131|microtubule-associated protein 1B##NM_004291|CARTPT|9607|CART prepropeptide##BC029882|CARTPT|9607|CART prepropeptide##U16826|CARTPT|9607|CART prepropeptide##CR542216|CARTPT|9607|CART prepropeptide##EU831800|CARTPT|9607|CART prepropeptide##EU831877|CARTPT|9607|CART prepropeptide##D87453|MRPS27|23107|mitochondrial ribosomal protein S27##BC064902|MRPS27|23107|mitochondrial ribosomal protein S27##BC011818|MRPS27|23107|mitochondrial ribosomal protein S27##AK299412|MRPS27|23107|mitochondrial ribosomal protein S27##AK025417|MRPS27|23107|mitochondrial ribosomal protein S27##AK309065|MRPS27|23107|mitochondrial ribosomal protein S27##AK300111|MRPS27|23107|mitochondrial ribosomal protein S27##NM_015084|MRPS27|23107|mitochondrial ribosomal protein S27##AK303776|PTCD2|79810|pentatricopeptide repeat domain 2##AK056761|PTCD2|79810|pentatricopeptide repeat domain 2##NM_024754|PTCD2|79810|pentatricopeptide repeat domain 2##AK298750|PTCD2|79810|pentatricopeptide repeat domain 2	1.577136	0.0	denovo_WM_7:-1:0.506	denovo_WM_7:14:0.376	denovo_WM_7:15:0.334
chr12	34175259	34175390	reg1000100.p2	11.779	+	AJ312278 NM_032834	-109	+	BC101024 BC101025 TSC_hg19_v1_chr12_-_33592705 AY198413 NM_198992	-582658	-	EU520483 EU520484 EU520485 EU520486 AB590796 HQ258660 TSC_hg19_v1_chr12_-_33049733 X97675 BC094762 BC126199 BC143966 BC143967 BC070083 NM_001005242 NM_004572	-1125589	-	TSC_hg19_v1_chr12_+_34175402 BC022336	62	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	149	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	4535301	+	AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC101024|SYT10|341359|synaptotagmin X##BC101025|SYT10|341359|synaptotagmin X##AY198413|SYT10|341359|synaptotagmin X##NM_198992|SYT10|341359|synaptotagmin X##EU520483|PKP2|5318|plakophilin 2##EU520484|PKP2|5318|plakophilin 2##EU520485|PKP2|5318|plakophilin 2##EU520486|PKP2|5318|plakophilin 2##HQ258660|PKP2|5318|plakophilin 2##X97675|PKP2|5318|plakophilin 2##BC094762|PKP2|5318|plakophilin 2##BC126199|PKP2|5318|plakophilin 2##BC143966|PKP2|5318|plakophilin 2##BC143967|PKP2|5318|plakophilin 2##BC070083|PKP2|5318|plakophilin 2##NM_001005242|PKP2|5318|plakophilin 2##NM_004572|PKP2|5318|plakophilin 2##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)	0.0	0.0	
chr11	19196954	19197067	reg1001069.p1	11.777	+	TSC_hg19_v1_chr11_+_19138714 BC050690 BC056152 NM_001001483 NM_019028 AB097014 AB097027 AK001714 BX648156 BC036020 AK291348 AB024495 CU691124	-58293	+	BC063450 NM_054030	-114783	-	BC096835 NM_147199	-240464	-	U20324 U72899 U49837 BC057221 NM_001127656 TSC_hg19_v1_chr11_-_19223531 AK313289 NM_003476 AF121260	26548	-	TSC_hg19_v1_chr11_-_19262479 AK055206 BC108700 BC126400 BC126402 NM_024680	65465	-	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	66191	-	BC050690|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC056152|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_001001483|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_019028|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097014|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097027|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK001714|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BX648156|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC036020|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK291348|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB024495|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC063450|MRGPRX2|117194|MAS-related GPR, member X2##NM_054030|MRGPRX2|117194|MAS-related GPR, member X2##BC096835|MRGPRX1|259249|MAS-related GPR, member X1##NM_147199|MRGPRX1|259249|MAS-related GPR, member X1##U20324|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U72899|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U49837|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##BC057221|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_001127656|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK313289|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_003476|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AF121260|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK055206|E2F8|79733|E2F transcription factor 8##BC108700|E2F8|79733|E2F transcription factor 8##BC126400|E2F8|79733|E2F transcription factor 8##BC126402|E2F8|79733|E2F transcription factor 8##NM_024680|E2F8|79733|E2F transcription factor 8##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8	1.949459	0.0	denovo_WM_7:-50:0.860	denovo_WM_7:-65:0.860
chr1	204482344	204482524	reg1001161.p1	11.774	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-18669	-	BC132876 BC136645 BC144342 NM_002646 AK308153	-22936	-	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	-101494	-	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	3068	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	3176	+	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	172157	-	BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC132876|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC136645|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC144342|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_002646|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AK308153|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2	0.979119	0.0	denovo_WM_7:35:0.812
chr3	121267494	121267674	reg1001090.p1	11.773	+	AB209867 TSC_hg19_v1_chr3_-_121264836 CR936627 AY338826 NM_199420	-2766	-	TSC_hg19_v1_chr3_+_120627071 NM_014980 AK296544 BC022029 AB023223	-640519	+	NM_005513 TSC_hg19_v1_chr3_+_120461590 AK223401 BC005917 S67859	-806002	+	NM_001012659	19193	+	NM_016298 AK314400 AF204674	44632	+	X16663 BC016758 TSC_hg19_v1_chr3_-_121379751 AK298696 AK300301	112142	-	AB209867|POLQ|10721|polymerase (DNA directed), theta##CR936627|POLQ|10721|polymerase (DNA directed), theta##AY338826|POLQ|10721|polymerase (DNA directed), theta##NM_199420|POLQ|10721|polymerase (DNA directed), theta##NM_014980|STXBP5L|9515|syntaxin binding protein 5-like##AK296544|STXBP5L|9515|syntaxin binding protein 5-like##BC022029|STXBP5L|9515|syntaxin binding protein 5-like##AB023223|STXBP5L|9515|syntaxin binding protein 5-like##NM_005513|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##AK223401|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##BC005917|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##S67859|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##NM_001012659|ARGFX|503582|arginine-fifty homeobox##NM_016298|FBXO40|51725|F-box protein 40##AK314400|FBXO40|51725|F-box protein 40##AF204674|FBXO40|51725|F-box protein 40##X16663|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##BC016758|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK298696|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK300301|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1	0.984237	0.0	denovo_WM_7:-6:0.311	denovo_WM_7:-7:0.311	denovo_WM_7:-8:0.311
chr19	36404562	36404695	reg1001284.p1	11.767	+	TSC_hg19_v1_chr19_-_36399212 NM_001173514 NM_001173515 NM_003332 NM_198125	-5415	-	TSC_hg19_v1_chr19_-_36399198 AF019562 BC011175 AK290385	-5436	-	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	-5478	-	BC003578 NM_024509	23393	+	TSC_hg19_v1_chr19_+_36486091 NM_001042631 BC007205 BC064605 BC069054 BC137516 BC137517	81466	+	CU690916 AK093764 AX748293 NM_001039876 BC052573 BC038360	95010	-	NM_001173514|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_001173515|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_003332|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_198125|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC003578|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_024509|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_001042631|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC007205|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC064605|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC069054|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137516|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137517|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##AK093764|C19orf46|163183|chromosome 19 open reading frame 46##NM_001039876|C19orf46|163183|chromosome 19 open reading frame 46##BC052573|C19orf46|163183|chromosome 19 open reading frame 46##BC038360|C19orf46|163183|chromosome 19 open reading frame 46	0.981473	0.0	denovo_WM_7:-26:0.873
chr20	48315854	48316010	reg1001144.p3	11.767	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-131243	-	BC110572 BC110573 NM_004975	-216753	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-420737	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	14298	-	AB004550 TSC_hg19_v1_chr20_-_48330359	14424	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	14534	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.99812	0.0	
chr10	97052993	97053137	reg1001292.p1	11.766	+	AJ310549 CU674454 EU446864 AB464004 TSC_hg19_v1_chr10_-_97050757 BC018755 AK314792 BC000915 NM_020992	-2283	-	AK126134 NM_207321	-99109	+	M21942 M21941 DQ891400 DQ894579 M17397 M17398 AK303813 Y00498 AK292753 AK293327 AK293328 AK298401 AK315823 BC020596 NM_000770 NM_001198853 NM_001198854 NM_001198855	-223902	-	AM393082 NM_001034954 NM_001034955 NM_001034956 NM_001034957 NM_006434	147850	-	TSC_hg19_v1_chr10_-_97321129 AB037717 BC152463 AK022468 AK300407 AK304753 AL117472 AM260536 NM_015385 NM_024991	268074	-	TSC_hg19_v1_chr10_-_97416472 U68758 U76542 BC106054 AK225455 AK225465 AK226032 AK295487 X94453 AK299557 AK312271 BC117240 BC117242 BC143930	363372	-	AJ310549|PDLIM1|9124|PDZ and LIM domain 1##EU446864|PDLIM1|9124|PDZ and LIM domain 1##BC018755|PDLIM1|9124|PDZ and LIM domain 1##AK314792|PDLIM1|9124|PDZ and LIM domain 1##BC000915|PDLIM1|9124|PDZ and LIM domain 1##NM_020992|PDLIM1|9124|PDZ and LIM domain 1##AK126134|C10orf129|142827|chromosome 10 open reading frame 129##NM_207321|C10orf129|142827|chromosome 10 open reading frame 129##M21942|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M21941|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ891400|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ894579|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17397|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17398|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK303813|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##Y00498|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK292753|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293327|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293328|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK298401|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK315823|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##BC020596|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_000770|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198853|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198854|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198855|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AM393082|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034954|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034955|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034956|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034957|SORBS1|10580|sorbin and SH3 domain containing 1##NM_006434|SORBS1|10580|sorbin and SH3 domain containing 1##AB037717|SORBS1|10580|sorbin and SH3 domain containing 1##BC152463|SORBS1|10580|sorbin and SH3 domain containing 1##AK022468|SORBS1|10580|sorbin and SH3 domain containing 1##AK300407|SORBS1|10580|sorbin and SH3 domain containing 1##AK304753|SORBS1|10580|sorbin and SH3 domain containing 1##AL117472|SORBS1|10580|sorbin and SH3 domain containing 1##AM260536|SORBS1|10580|sorbin and SH3 domain containing 1##NM_015385|SORBS1|10580|sorbin and SH3 domain containing 1##NM_024991|SORBS1|10580|sorbin and SH3 domain containing 1##U68758|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##U76542|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC106054|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK225455|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK225465|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK226032|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK295487|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##X94453|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK299557|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK312271|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC117240|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC117242|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC143930|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1	0.998421	0.0	denovo_WM_7:-19:0.229	denovo_WM_7:-20:0.229	denovo_WM_7:-21:0.229	denovo_WM_7:-22:0.229
chr4	77679571	77679698	reg1001306.p1	11.765	+	TSC_hg19_v1_chr4_+_77610738 AK304103	-68883	+	AK027744 TSC_hg19_v1_chr4_+_77610613	-69023	+	AB055660 NM_020859	-323382	+	NM_001029870 BC137241 BC137255	139405	-	TSC_hg19_v1_chr4_+_77870905 BC008083 NM_018243	191251	+	TSC_hg19_v1_chr4_+_77870908 BC064934	191278	+	AK304103|SHROOM3|57619|shroom family member 3##AK027744|SHROOM3|57619|shroom family member 3##AB055660|SHROOM3|57619|shroom family member 3##NM_020859|SHROOM3|57619|shroom family member 3##NM_001029870|ANKRD56|345079|ankyrin repeat domain 56##BC137241|ANKRD56|345079|ankyrin repeat domain 56##BC137255|ANKRD56|345079|ankyrin repeat domain 56##BC008083|SEPT11|55752|septin 11##NM_018243|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11	0.997906	0.13492	denovo_WM_7:-13:0.298	denovo_WM_7:-14:0.298	denovo_WM_7:-15:0.298
chr4	96077418	96077568	reg1001521.p1	11.764	+	TSC_hg19_v1_chr4_+_95679109 NM_001203 U89326	-398387	+	BC026029 AM393306 AM393394 AM393485 AM393621 AM393813 DQ890686 DQ893868 AB587372 CU676108 CU679071 AY598328 BT007328 TSC_hg19_v1_chr4_+_95376500	-701043	+	TSC_hg19_v1_chr4_+_95373092 BC017902 BC008741 AK291898 AK291624 AK304125 AK296980 AL832157 AL832686 AF061258 AL833151 AL833438	-704397	+	TSC_hg19_v1_chr4_-_96470125 AK308421 AF055634 AK290500	392686	-	BC034747 BC041156 TSC_hg19_v1_chr4_-_96470369 NM_003728	392883	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	683765	+	NM_001203|BMPR1B|658|bone morphogenetic protein receptor, type IB##U89326|BMPR1B|658|bone morphogenetic protein receptor, type IB##BC026029|PDLIM5|10611|PDZ and LIM domain 5##AM393306|PDLIM5|10611|PDZ and LIM domain 5##AM393394|PDLIM5|10611|PDZ and LIM domain 5##AM393485|PDLIM5|10611|PDZ and LIM domain 5##AM393621|PDLIM5|10611|PDZ and LIM domain 5##AM393813|PDLIM5|10611|PDZ and LIM domain 5##DQ890686|PDLIM5|10611|PDZ and LIM domain 5##DQ893868|PDLIM5|10611|PDZ and LIM domain 5##AY598328|PDLIM5|10611|PDZ and LIM domain 5##BT007328|PDLIM5|10611|PDZ and LIM domain 5##BC017902|PDLIM5|10611|PDZ and LIM domain 5##BC008741|PDLIM5|10611|PDZ and LIM domain 5##AK291898|PDLIM5|10611|PDZ and LIM domain 5##AK291624|PDLIM5|10611|PDZ and LIM domain 5##AK304125|PDLIM5|10611|PDZ and LIM domain 5##AK296980|PDLIM5|10611|PDZ and LIM domain 5##AL832157|PDLIM5|10611|PDZ and LIM domain 5##AL832686|PDLIM5|10611|PDZ and LIM domain 5##AF061258|PDLIM5|10611|PDZ and LIM domain 5##AL833151|PDLIM5|10611|PDZ and LIM domain 5##AL833438|PDLIM5|10611|PDZ and LIM domain 5##AK308421|UNC5C|8633|unc-5 homolog C (C. elegans)##AF055634|UNC5C|8633|unc-5 homolog C (C. elegans)##AK290500|UNC5C|8633|unc-5 homolog C (C. elegans)##BC034747|UNC5C|8633|unc-5 homolog C (C. elegans)##BC041156|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_003728|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2	0.996143	0.273133	denovo_WM_7:-15:0.835	CTCF.p2:16:0.273
chr7	2446572	2446752	reg1001314.p4	11.762	+	TSC_hg19_v1_chr7_+_2443245 BC095492 BC002918 BC015954 AK223191 AK223211 AK313484 AF239822 AY358574	-3419	+	TSC_hg19_v1_chr7_+_2443191 NM_001243794 NM_001243795 NM_018641	-3482	+	TSC_hg19_v1_chr7_+_2394547 BC110865	-52115	+	AK096284 NM_001166355	105500	+	BC014851 NM_002304	110834	+	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	112775	+	BC095492|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC002918|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC015954|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223191|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223211|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK313484|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AF239822|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AY358574|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243794|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243795|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_018641|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC110865|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK096284|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001166355|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC014851|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_002304|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	0.997711	0.0	denovo_WM_7:19:0.674
chr1	46710721	46710831	reg1000885.p1	11.749	+	CR749700 AK056186 NM_001243766	-24807	-	AK057892 NM_001013615 TSC_hg19_v1_chr1_+_46669021 BC034422 AB463505	-41725	+	TSC_hg19_v1_chr1_-_46664112 BC001471 NM_017739	-46651	-	TSC_hg19_v1_chr1_+_46713362 NM_001142548 NM_003579	2592	+	TSC_hg19_v1_chr1_+_46713388 AK292611	2610	+	TSC_hg19_v1_chr1_+_46713434 AK297204	2663	+	CR749700|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK056186|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_001243766|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK057892|C1orf190|541468|chromosome 1 open reading frame 190##NM_001013615|C1orf190|541468|chromosome 1 open reading frame 190##BC034422|C1orf190|541468|chromosome 1 open reading frame 190##BC001471|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_017739|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_001142548|RAD54L|8438|RAD54-like (S. cerevisiae)##NM_003579|RAD54L|8438|RAD54-like (S. cerevisiae)##AK292611|RAD54L|8438|RAD54-like (S. cerevisiae)##AK297204|RAD54L|8438|RAD54-like (S. cerevisiae)	0.982619	0.992443	CTCF.p2:-22:0.992	denovo_WM_7:32:0.484
chr20	3890869	3891032	reg1001188.p2	11.748	+	NM_153640 BC107724 BC065019	-20461	+	TSC_hg19_v1_chr20_+_3870042 AK310190 AK097796 BC142976 BC009421	-20894	+	TSC_hg19_v1_chr20_-_3869721 BC005095 BC012193	-21232	-	AL096778 NM_007219 BC039584 TSC_hg19_v1_chr20_-_3996221 BC000213 BC003141 NM_001134337 NM_001134338 BC032738	105215	-	TSC_hg19_v1_chr20_+_4129438 NM_175839 NM_175840 NM_175841 NM_175842	238485	+	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	238573	+	NM_153640|PANK2|80025|pantothenate kinase 2##BC107724|PANK2|80025|pantothenate kinase 2##BC065019|PANK2|80025|pantothenate kinase 2##AK310190|PANK2|80025|pantothenate kinase 2##AK097796|PANK2|80025|pantothenate kinase 2##BC142976|PANK2|80025|pantothenate kinase 2##BC009421|PANK2|80025|pantothenate kinase 2##AL096778|RNF24|11237|ring finger protein 24##NM_007219|RNF24|11237|ring finger protein 24##BC039584|RNF24|11237|ring finger protein 24##BC000213|RNF24|11237|ring finger protein 24##NM_001134337|RNF24|11237|ring finger protein 24##NM_001134338|RNF24|11237|ring finger protein 24##NM_175839|SMOX|54498|spermine oxidase##NM_175840|SMOX|54498|spermine oxidase##NM_175841|SMOX|54498|spermine oxidase##NM_175842|SMOX|54498|spermine oxidase##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase	1.981516	0.0	denovo_WM_7:0:0.260	denovo_WM_7:0:0.656	denovo_WM_7:15:0.806
chr6	117771125	117771256	reg1001575.p1	11.745	+	M34353 NM_002944 TSC_hg19_v1_chr6_-_117747031	-24159	-	AY056583 NM_153453 TSC_hg19_v1_chr6_+_117586720 AJ578053 NM_182645 BC100798 BC100799 BC118545 BC118622 BC069316 AK096878	-184379	+	BC039248 NM_173560	-572815	+	TSC_hg19_v1_chr6_+_117803805 BC035671 NM_173674 AK095973	32647	+	CU679397 TSC_hg19_v1_chr6_-_117923611 AF287894	152341	-	TSC_hg19_v1_chr6_-_117923643 BC009553 AY033606 AB209385	152443	-	M34353|ROS1|6098|c-ros oncogene 1 , receptor tyrosine kinase##NM_002944|ROS1|6098|c-ros oncogene 1 , receptor tyrosine kinase##AY056583|VGLL2|245806|vestigial like 2 (Drosophila)##NM_153453|VGLL2|245806|vestigial like 2 (Drosophila)##AJ578053|VGLL2|245806|vestigial like 2 (Drosophila)##NM_182645|VGLL2|245806|vestigial like 2 (Drosophila)##BC100798|VGLL2|245806|vestigial like 2 (Drosophila)##BC100799|VGLL2|245806|vestigial like 2 (Drosophila)##BC118545|VGLL2|245806|vestigial like 2 (Drosophila)##BC118622|VGLL2|245806|vestigial like 2 (Drosophila)##BC069316|VGLL2|245806|vestigial like 2 (Drosophila)##AK096878|VGLL2|245806|vestigial like 2 (Drosophila)##BC039248|RFX6|222546|regulatory factor X, 6##NM_173560|RFX6|222546|regulatory factor X, 6##BC035671|DCBLD1|285761|discoidin, CUB and LCCL domain containing 1##NM_173674|DCBLD1|285761|discoidin, CUB and LCCL domain containing 1##AK095973|DCBLD1|285761|discoidin, CUB and LCCL domain containing 1##AF287894|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##BC009553|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##AY033606|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##AB209385|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing	0.975247	0.748179	CTCF.p2:9:0.748	denovo_WM_7:-40:0.778
chr15	101665032	101665171	reg1001202.p1	11.734	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-205589	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-205627	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-245030	+	AB071402 TSC_hg19_v1_chr15_-_101791795	126635	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	127034	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	152562	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.998441	0.0	
chr13	51467765	51467899	reg1001075.p2	11.727	+	AY357595 BC104892 BC112009 NM_198989 AK303567 AK126830	-49880	-	AJ412041 AJ412042 AJ412043 TSC_hg19_v1_chr13_+_50760088	-707779	+	TSC_hg19_v1_chr13_-_50699781 AF380424	-768017	-	NM_001142279 NM_024570 TSC_hg19_v1_chr13_+_51483898	16024	+	TSC_hg19_v1_chr13_+_51483905 AY764036	16072	+	TSC_hg19_v1_chr13_+_51483926 AK021774 AK223340 BC036744	16122	+	AY357595|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC104892|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC112009|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_198989|DLEU7|220107|deleted in lymphocytic leukemia, 7##AK126830|DLEU7|220107|deleted in lymphocytic leukemia, 7##AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##NM_001142279|RNASEH2B|79621|ribonuclease H2, subunit B##NM_024570|RNASEH2B|79621|ribonuclease H2, subunit B##AY764036|RNASEH2B|79621|ribonuclease H2, subunit B##AK021774|RNASEH2B|79621|ribonuclease H2, subunit B##AK223340|RNASEH2B|79621|ribonuclease H2, subunit B##BC036744|RNASEH2B|79621|ribonuclease H2, subunit B	0.999365	0.0	denovo_WM_7:-19:0.964
chr10	31996644	31996817	reg1001199.p1	11.717	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-386641	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-388597	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-388773	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	220994	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	221055	-	TSC_hg19_v1_chr10_-_32344938 AB462413	348202	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.987889	0.0	denovo_WM_7:-8:0.331	denovo_WM_7:-11:0.511
chr2	148602418	148602598	reg1001113.p1	11.717	+	TSC_hg19_v1_chr2_+_148602300 AK314124	-173	+	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	-391	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-3324587	-	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	137	+	TSC_hg19_v1_chr2_-_148778310 AK225092 BC005388 AF022108 AF047598 AF132596 BC014847 AK295721 AK291989 AK294878 AK298862 NM_001190882 NM_001190879 AK299749 NM_002552 NM_001190881 NM_181741	175854	-	TSC_hg19_v1_chr2_+_148778636 NM_018328 EF542797	176101	+	AK314124|ACVR2A|92|activin A receptor, type IIA##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA##AK225092|ORC4|5000|origin recognition complex, subunit 4##BC005388|ORC4|5000|origin recognition complex, subunit 4##AF022108|ORC4|5000|origin recognition complex, subunit 4##AF047598|ORC4|5000|origin recognition complex, subunit 4##AF132596|ORC4|5000|origin recognition complex, subunit 4##BC014847|ORC4|5000|origin recognition complex, subunit 4##AK295721|ORC4|5000|origin recognition complex, subunit 4##AK291989|ORC4|5000|origin recognition complex, subunit 4##AK294878|ORC4|5000|origin recognition complex, subunit 4##AK298862|ORC4|5000|origin recognition complex, subunit 4##NM_001190882|ORC4|5000|origin recognition complex, subunit 4##NM_001190879|ORC4|5000|origin recognition complex, subunit 4##AK299749|ORC4|5000|origin recognition complex, subunit 4##NM_002552|ORC4|5000|origin recognition complex, subunit 4##NM_001190881|ORC4|5000|origin recognition complex, subunit 4##NM_181741|ORC4|5000|origin recognition complex, subunit 4##NM_018328|MBD5|55777|methyl-CpG binding domain protein 5##EF542797|MBD5|55777|methyl-CpG binding domain protein 5	2.091687	0.0	denovo_WM_7:39:0.694
chr6	13433244	13433391	reg1001241.p3	11.716	+	AK027010 NM_001242630	-24949	-	AF151073 AK223445 AY542308 AY826820 TSC_hg19_v1_chr6_-_13328771 BC050465 AK057228 AK296391 BC007054 AL833474 NM_001143964 NM_001143965 NM_001143966 NM_016495	-104617	-	AK091836 AX747210 NM_001242698	-137500	-	AK055131 AF264036 NM_001242628	53081	-	TSC_hg19_v1_chr6_-_13487051 BC148295 BC119005 BC124557	53780	-	TSC_hg19_v1_chr6_-_13487810 AK000337 NM_001242629 NM_018988	54541	-	AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AF151073|TBC1D7|51256|TBC1 domain family, member 7##AK223445|TBC1D7|51256|TBC1 domain family, member 7##AY542308|TBC1D7|51256|TBC1 domain family, member 7##AY826820|TBC1D7|51256|TBC1 domain family, member 7##BC050465|TBC1D7|51256|TBC1 domain family, member 7##AK057228|TBC1D7|51256|TBC1 domain family, member 7##AK296391|TBC1D7|51256|TBC1 domain family, member 7##BC007054|TBC1D7|51256|TBC1 domain family, member 7##AL833474|TBC1D7|51256|TBC1 domain family, member 7##NM_001143964|TBC1D7|51256|TBC1 domain family, member 7##NM_001143965|TBC1D7|51256|TBC1 domain family, member 7##NM_001143966|TBC1D7|51256|TBC1 domain family, member 7##NM_016495|TBC1D7|51256|TBC1 domain family, member 7##AK091836|LOC100130357|100130357|uncharacterized LOC100130357##NM_001242698|LOC100130357|100130357|uncharacterized LOC100130357##AK055131|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AF264036|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242628|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC148295|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC119005|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC124557|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AK000337|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242629|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_018988|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	0.99773	0.0	denovo_WM_7:41:0.238	denovo_WM_7:42:0.238	denovo_WM_7:43:0.238	denovo_WM_7:44:0.238
chr18	55505157	55505280	reg1001240.p1	11.715	+	TSC_hg19_v1_chr18_-_55470548 NM_005603	-34748	-	NM_001242804 BC040476	-207661	+	TSC_hg19_v1_chr18_-_55289034 AK293985 NM_004539	-216117	-	TSC_hg19_v1_chr18_+_55711515 NM_001144967 NM_001243960 NM_015277	206318	+	TSC_hg19_v1_chr18_+_55711771 AB071179	206566	+	DQ890913 DQ893350 AY312514 TSC_hg19_v1_chr18_+_55711911	206688	+	NM_005603|ATP8B1|5205|ATPase, aminophospholipid transporter, class I, type 8B, member 1##NM_001242804|LOC100505549|100505549|uncharacterized LOC100505549##BC040476|LOC100505549|100505549|uncharacterized LOC100505549##AK293985|NARS|4677|asparaginyl-tRNA synthetase##NM_004539|NARS|4677|asparaginyl-tRNA synthetase##NM_001144967|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001243960|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_015277|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AB071179|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ890913|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ893350|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY312514|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like	0.999191	0.0	denovo_WM_7:-51:0.862
chr1	155499067	155499208	reg1000527.p1	11.714	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-204845	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-205195	-	BC052277 NM_001105205	-205410	+	AF257305 TSC_hg19_v1_chr1_-_155532251	33069	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	33230	-	TSC_hg19_v1_chr1_-_155532562 AK307595	33444	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.999103	0.0	denovo_WM_7:13:0.310	denovo_WM_7:14:0.310	denovo_WM_7:15:0.310
chr19	10529642	10529781	reg1001057.p1	11.713	+	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	-2208	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-15455	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-15498	-	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	1519	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	11716	+	AF073745 NM_001111309	13399	+	AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AF073745|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111309|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.988959	0.047717	
chr13	99161621	99161793	reg1001134.p1	11.712	+	TSC_hg19_v1_chr13_+_99058147 AF339817	-103501	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-332202	-	TSC_hg19_v1_chr13_+_98795717 AB008430 BC065020	-365989	+	AF083420 NM_003576	12588	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	67347	-	AF024636 AK297583 AK299140 TSC_hg19_v1_chr13_-_99229127	67415	-	EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##AB008430|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC065020|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24##AF024636|STK24|8428|serine/threonine kinase 24##AK297583|STK24|8428|serine/threonine kinase 24##AK299140|STK24|8428|serine/threonine kinase 24	1.364556	0.0	denovo_WM_7:41:0.201	denovo_WM_7:42:0.596	denovo_WM_7:-46:0.337
chr4	148758710	148758863	reg1001248.p1	11.711	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	-105329	+	TSC_hg19_v1_chr4_+_148653238 AK123785	-105535	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	-153522	-	TSC_hg19_v1_chr4_-_149357955 AB587357	599196	-	TSC_hg19_v1_chr4_-_149363305 BC111758	604553	-	TSC_hg19_v1_chr4_-_149363539 AJ315514 M16801 AK304318 NM_000901 NM_001166104	604798	-	AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC111758|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AJ315514|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##M16801|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AK304318|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_000901|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_001166104|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2	0.993915	0.0	
chr8	137084905	137085085	reg1000995.p2	11.710	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-614794	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-615337	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1359721	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	2424111	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2841249	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3630287	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.935534	0.0	denovo_WM_7:2:0.607	denovo_WM_7:3:0.328
chr5	81396542	81396695	reg1001092.p2	11.709	+	TSC_hg19_v1_chr5_+_81268100 AL136912	-128520	+	AF318326 TSC_hg19_v1_chr5_+_81267992	-128628	+	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	-128773	+	D14530 TSC_hg19_v1_chr5_-_81574174 AK291132 AK311772 D28396 BC070221	177553	-	TSC_hg19_v1_chr5_-_81574219 NM_001025	177601	-	BC093982 BC112191 NM_001017971	204547	+	AL136912|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AF318326|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##D14530|RPS23|6228|ribosomal protein S23##AK291132|RPS23|6228|ribosomal protein S23##AK311772|RPS23|6228|ribosomal protein S23##D28396|RPS23|6228|ribosomal protein S23##BC070221|RPS23|6228|ribosomal protein S23##NM_001025|RPS23|6228|ribosomal protein S23##BC093982|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC112191|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001017971|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like	1.016687	0.0	
chr1	12107466	12107605	reg1001440.p1	11.702	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-27965	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-28001	+	FJ618905 NM_021933	-28237	+	M83554 NM_001243 BC136400 BC171762 S75768	16009	+	D86042 BC063482 NM_152942 BC073839 BC141804	78481	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	119526	+	AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##FJ618905|MIIP|60672|migration and invasion inhibitory protein##NM_021933|MIIP|60672|migration and invasion inhibitory protein##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.0	0.0	
chr16	46981884	46982014	reg1001366.p1	11.702	+	NM_001142466 AK094971	-62847	+	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	-63668	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	-116861	-	TSC_hg19_v1_chr16_-_47005340 Y13350	23399	-	CU677459 AF011793 AJ001309 TSC_hg19_v1_chr16_-_47007561	25573	-	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	25646	-	NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##Y13350|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AJ001309|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2	0.0	0.143854	
chr19	2553051	2553217	reg1001407.p1	11.696	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-76896	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-96174	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-96198	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	149561	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	149608	-	AK124445 TSC_hg19_v1_chr19_-_2717420	164215	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.999088	0.0	denovo_WM_7:0:0.310	denovo_WM_7:-1:0.310	denovo_WM_7:-2:0.310
chr1	203296606	203296743	reg1001164.p1	11.694	+	TSC_hg19_v1_chr1_+_203274646 NM_006763 U72649 Y09943 BC105948 BC105949 AB463451 EU446924	-21985	+	U62662 BC103695 BC105680 BC105681 BC105682 U29615 TSC_hg19_v1_chr1_-_203198802 AK055165 AK309341 AK225245 AK314331 NM_003465	-97859	-	TSC_hg19_v1_chr1_-_203155913 NM_001276	-140748	-	TSC_hg19_v1_chr1_-_203317366 AB590335 DQ892112 DQ895306 X75546	20710	-	TSC_hg19_v1_chr1_-_203320217 AK291632 AK303866 AK092899 AX747797 BC035281	23535	-	AK172740 TSC_hg19_v1_chr1_-_203320256	23587	-	NM_006763|BTG2|7832|BTG family, member 2##U72649|BTG2|7832|BTG family, member 2##Y09943|BTG2|7832|BTG family, member 2##BC105948|BTG2|7832|BTG family, member 2##BC105949|BTG2|7832|BTG family, member 2##EU446924|BTG2|7832|BTG family, member 2##U62662|CHIT1|1118|chitinase 1 (chitotriosidase)##BC103695|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105680|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105681|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105682|CHIT1|1118|chitinase 1 (chitotriosidase)##U29615|CHIT1|1118|chitinase 1 (chitotriosidase)##AK055165|CHIT1|1118|chitinase 1 (chitotriosidase)##AK309341|CHIT1|1118|chitinase 1 (chitotriosidase)##AK225245|CHIT1|1118|chitinase 1 (chitotriosidase)##AK314331|CHIT1|1118|chitinase 1 (chitotriosidase)##NM_003465|CHIT1|1118|chitinase 1 (chitotriosidase)##NM_001276|CHI3L1|1116|chitinase 3-like 1 (cartilage glycoprotein-39)##DQ892112|FMOD|2331|fibromodulin##DQ895306|FMOD|2331|fibromodulin##X75546|FMOD|2331|fibromodulin##AK291632|FMOD|2331|fibromodulin##AK303866|FMOD|2331|fibromodulin##AK092899|FMOD|2331|fibromodulin##BC035281|FMOD|2331|fibromodulin	1.034005	0.0	denovo_WM_7:6:0.321	denovo_WM_7:12:0.236
chr10	22993526	22993685	reg1001291.p2	11.692	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-267606	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-359149	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-383440	+	AK294817 TSC_hg19_v1_chr10_-_23003038	9432	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	9885	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	223376	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	0.998425	0.0	
chr12	118643168	118643348	reg1001027.p1	11.692	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-69280	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-69335	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-69383	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	167370	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	167472	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	171144	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.979961	0.0	denovo_WM_7:-78:0.703
chr12	4938784	4938934	reg1001228.p1	11.690	+	NM_002235 X17622 TSC_hg19_v1_chr12_+_4918486	-20444	+	AJ271385 NM_017417 BC140888 BC140889	-109091	+	TSC_hg19_v1_chr12_+_4758272 NM_005002 BC015837 AF050641 AK308588 BC009311 AK291067 BC111546 L04490	-180581	+	TSC_hg19_v1_chr12_+_5019070 NM_000217	80201	+	M55513 NM_002234 BC096357 BC096358 BC099665 BC099666 M60451 M83254	214260	+	TSC_hg19_v1_chr12_+_5541277 AK293895 NM_001102654	602417	+	NM_002235|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##X17622|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##AJ271385|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_017417|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140888|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140889|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_005002|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC015837|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AF050641|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AK308588|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC009311|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AK291067|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC111546|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##L04490|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##NM_000217|KCNA1|3736|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)##M55513|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_002234|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096357|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096358|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099665|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099666|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M60451|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M83254|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##AK293895|NTF3|4908|neurotrophin 3##NM_001102654|NTF3|4908|neurotrophin 3	0.926036	0.0	denovo_WM_7:15:0.304	denovo_WM_7:16:0.622
chr7	20369150	20369299	reg1001061.p1	11.690	+	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	-112244	-	BX648384 NM_152774	-556821	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-620578	-	AK295044 TSC_hg19_v1_chr7_+_20370337	1113	+	BC002630 NM_002214 M73780	1510	+	AB353947 NM_001163941 AY230001	286073	+	BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8##AB353947|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5##NM_001163941|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5##AY230001|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5	0.999843	0.0	
chr1	114401172	114401316	reg1001183.p1	11.688	+	TSC_hg19_v1_chr1_-_114354906 AK002082 BC026155 NM_018364 AK292552	-46243	-	TSC_hg19_v1_chr1_-_114354898 CU693140 CR627402	-46363	-	TSC_hg19_v1_chr1_-_114302096 BC002447	-99104	-	AB587398 JN084012 AF001846 AF001847 GU479452 AF150732 AF077031 BC071670 AK303124 TSC_hg19_v1_chr1_-_114414332 AK310570 AK310698 BC017785 NM_001193431 NM_012411 NM_015967	13065	-	AY265861 AY265862 AY265863 AY265864 BC127719 BC127720 TSC_hg19_v1_chr1_-_114430038 BC132904 BC132906 CR749373	28794	-	NM_001010922 TSC_hg19_v1_chr1_-_114430204 AK289439	28942	-	AK002082|RSBN1|54665|round spermatid basic protein 1##BC026155|RSBN1|54665|round spermatid basic protein 1##NM_018364|RSBN1|54665|round spermatid basic protein 1##AK292552|RSBN1|54665|round spermatid basic protein 1##CR627402|RSBN1|54665|round spermatid basic protein 1##BC002447|PHTF1|10745|putative homeodomain transcription factor 1##JN084012|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF001846|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##GU479452|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF150732|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF077031|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC071670|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK303124|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310570|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310698|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC017785|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_001193431|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_012411|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_015967|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AY265861|BCL2L15|440603|BCL2-like 15##AY265862|BCL2L15|440603|BCL2-like 15##AY265863|BCL2L15|440603|BCL2-like 15##AY265864|BCL2L15|440603|BCL2-like 15##BC127719|BCL2L15|440603|BCL2-like 15##BC127720|BCL2L15|440603|BCL2-like 15##BC132904|BCL2L15|440603|BCL2-like 15##BC132906|BCL2L15|440603|BCL2-like 15##CR749373|BCL2L15|440603|BCL2-like 15##NM_001010922|BCL2L15|440603|BCL2-like 15##AK289439|BCL2L15|440603|BCL2-like 15	0.995621	0.0	denovo_WM_7:29:0.455	denovo_WM_7:30:0.455
chr14	59263949	59264129	reg1001151.p2	11.687	+	TSC_hg19_v1_chr14_+_59104741 NM_001079520 NM_016651	-159293	+	AK302579 NM_001244193 AK310356 AK302718	-357613	+	NM_014749 BC066647	-369308	+	TSC_hg19_v1_chr14_+_59655450 BX648383 BC064999 NM_014992 BC038428 AK291790 AK021890 BX247986	391365	+	TSC_hg19_v1_chr14_-_59931852 DQ893361 DQ896680 AY288418 M76676	667883	-	TSC_hg19_v1_chr14_-_59932051 BC032831 NM_022571	668017	-	NM_001079520|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##NM_016651|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##AK302579|KIAA0586|9786|KIAA0586##NM_001244193|KIAA0586|9786|KIAA0586##AK310356|KIAA0586|9786|KIAA0586##AK302718|KIAA0586|9786|KIAA0586##NM_014749|KIAA0586|9786|KIAA0586##BC066647|KIAA0586|9786|KIAA0586##BC064999|DAAM1|23002|dishevelled associated activator of morphogenesis 1##NM_014992|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BC038428|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK291790|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK021890|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BX247986|DAAM1|23002|dishevelled associated activator of morphogenesis 1##DQ893361|GPR135|64582|G protein-coupled receptor 135##DQ896680|GPR135|64582|G protein-coupled receptor 135##AY288418|GPR135|64582|G protein-coupled receptor 135##M76676|GPR135|64582|G protein-coupled receptor 135##BC032831|GPR135|64582|G protein-coupled receptor 135##NM_022571|GPR135|64582|G protein-coupled receptor 135	0.0	0.0	
chr22	47397268	47397446	reg1001081.p2	11.686	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-238757	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-263202	-	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	-263278	-	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	630146	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	1487923	+	AK125256 NM_015381 AK123443 AY358847	1574804	+	NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##AK093107|LOC284930|284930|uncharacterized LOC284930##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5	0.990944	0.0	
chr12	27090986	27091151	reg1001312.p1	11.685	+	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	-159	-	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	-104988	-	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-742483	+	TSC_hg19_v1_chr12_-_27091213 NM_018164	162	-	NM_001171887 NM_001171888 NM_015633 AK001534 TSC_hg19_v1_chr12_+_27091402 BC032143 AF161472	307	+	TSC_hg19_v1_chr12_-_27167274 AK002031 AB032470 BC005176	76090	-	AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_001171887|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_001171888|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_015633|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK001534|FGFR1OP2|26127|FGFR1 oncogene partner 2##BC032143|FGFR1OP2|26127|FGFR1 oncogene partner 2##AF161472|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK002031|TM7SF3|51768|transmembrane 7 superfamily member 3##AB032470|TM7SF3|51768|transmembrane 7 superfamily member 3##BC005176|TM7SF3|51768|transmembrane 7 superfamily member 3	0.0	0.0	
chr7	46178908	46179061	reg1001246.p1	11.685	+	DQ884396 DQ884397 DQ884398 AB590345 DQ895344 BC018962 BC000013 M31159 BC064987 TSC_hg19_v1_chr7_-_45960872 AK075483 AK095991 AK123735 AK055632 AK056274 AK091706 AK091745 AK092447 AK095408 AK095864 AK095869 AK095900 AK095907 AK095974 AK097201 AK122873 AK125224 AK127537 AK129951 AK130884 AK297767 AK298143 AK315668 AX747551 NM_000598 NM_001013398 X64875	-218178	-	AF042356 TSC_hg19_v1_chr7_+_45933167	-245850	+	NM_000596 TSC_hg19_v1_chr7_+_45928086 AK314925 BC057806 M31145 BC035263 X12385 M20841 X13405 Y00856 BT019685 FJ795026	-250879	+	TSC_hg19_v1_chr7_-_47579207 BC071791	1400225	-	TSC_hg19_v1_chr7_-_47621681 CR749644	1442679	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	1442799	-	DQ884396|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884397|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884398|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ895344|IGFBP3|3486|insulin-like growth factor binding protein 3##BC018962|IGFBP3|3486|insulin-like growth factor binding protein 3##BC000013|IGFBP3|3486|insulin-like growth factor binding protein 3##M31159|IGFBP3|3486|insulin-like growth factor binding protein 3##BC064987|IGFBP3|3486|insulin-like growth factor binding protein 3##AK075483|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095991|IGFBP3|3486|insulin-like growth factor binding protein 3##AK123735|IGFBP3|3486|insulin-like growth factor binding protein 3##AK055632|IGFBP3|3486|insulin-like growth factor binding protein 3##AK056274|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091706|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091745|IGFBP3|3486|insulin-like growth factor binding protein 3##AK092447|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095408|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095864|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095869|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095900|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095907|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095974|IGFBP3|3486|insulin-like growth factor binding protein 3##AK097201|IGFBP3|3486|insulin-like growth factor binding protein 3##AK122873|IGFBP3|3486|insulin-like growth factor binding protein 3##AK125224|IGFBP3|3486|insulin-like growth factor binding protein 3##AK127537|IGFBP3|3486|insulin-like growth factor binding protein 3##AK129951|IGFBP3|3486|insulin-like growth factor binding protein 3##AK130884|IGFBP3|3486|insulin-like growth factor binding protein 3##AK297767|IGFBP3|3486|insulin-like growth factor binding protein 3##AK298143|IGFBP3|3486|insulin-like growth factor binding protein 3##AK315668|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000598|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_001013398|IGFBP3|3486|insulin-like growth factor binding protein 3##X64875|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000596|IGFBP1|3484|insulin-like growth factor binding protein 1##AK314925|IGFBP1|3484|insulin-like growth factor binding protein 1##BC057806|IGFBP1|3484|insulin-like growth factor binding protein 1##M31145|IGFBP1|3484|insulin-like growth factor binding protein 1##BC035263|IGFBP1|3484|insulin-like growth factor binding protein 1##X12385|IGFBP1|3484|insulin-like growth factor binding protein 1##M20841|IGFBP1|3484|insulin-like growth factor binding protein 1##X13405|IGFBP1|3484|insulin-like growth factor binding protein 1##Y00856|IGFBP1|3484|insulin-like growth factor binding protein 1##BT019685|IGFBP1|3484|insulin-like growth factor binding protein 1##FJ795026|IGFBP1|3484|insulin-like growth factor binding protein 1##BC071791|TNS3|64759|tensin 3##CR749644|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3	0.0	0.0	
chr14	68283498	68283649	reg1001221.p2	11.684	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-274	-	AK315462 NM_152443	-114971	+	CR457180 CU680026 CU691474 CU693194 BC011727 BC000112 TSC_hg19_v1_chr14_-_68162477 AK289427 BC026274 DQ426886 AK057195 AK293355 BC051291 AF151840 AF167438 AF395068 AK307500 AK314465 BC037302 AK074749 NM_001252650 NM_016026	-121109	-	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	2947	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	976147	-	NM_001244698 NM_004926	977057	-	AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##CR457180|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC011727|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC000112|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK289427|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC026274|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##DQ426886|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK057195|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK293355|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC051291|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF151840|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF167438|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF395068|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK307500|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK314465|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC037302|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK074749|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_001252650|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_016026|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.989186	0.013329	denovo_WM_7:22:0.889
chr16	29765934	29766082	reg1000996.p2	11.678	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	-8707	-	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-75526	+	AK293195 NM_014298 TSC_hg19_v1_chr16_+_29690460	-75614	+	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	23578	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	36043	+	TSC_hg19_v1_chr16_+_29802074 AK316389 BC028155 BT007259 DQ890771 DQ893652 DQ893932 DQ895829	36079	+	BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK293195|QPRT|23475|quinolinate phosphoribosyltransferase##NM_014298|QPRT|23475|quinolinate phosphoribosyltransferase##NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22##AK316389|KIF22|3835|kinesin family member 22##BC028155|KIF22|3835|kinesin family member 22##BT007259|KIF22|3835|kinesin family member 22##DQ890771|KIF22|3835|kinesin family member 22##DQ893652|KIF22|3835|kinesin family member 22##DQ893932|KIF22|3835|kinesin family member 22##DQ895829|KIF22|3835|kinesin family member 22	0.979276	0.0	denovo_WM_7:-36:0.777
chr20	35474553	35474692	reg1001342.p1	11.678	+	TSC_hg19_v1_chr20_-_35444558 AK131491	-30002	-	AK057056 TSC_hg19_v1_chr20_-_35407842	-66846	-	TSC_hg19_v1_chr20_-_35402167 BC035821 AK093031 AX747868 AK290738 NM_001145316 NM_024918 AK301671 AK301840 BC058899 AK023408 BC026011 NM_001145315 NM_001145317 NM_001145318	-72437	-	AK126630 NM_199181	13653	-	TSC_hg19_v1_chr20_-_35492072 NM_080627	17512	-	TSC_hg19_v1_chr20_+_35504544 BC127688 BC130646 BC130648 AK123544 NM_080628 HQ258755	29927	+	AK131491|KIAA0889|140710|KIAA0889##AK057056|KIAA0889|140710|KIAA0889##BC035821|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK093031|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK290738|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145316|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_024918|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301671|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301840|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC058899|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK023408|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC026011|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145315|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145317|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145318|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK126630|KIAA0889|140710|KIAA0889##NM_199181|KIAA0889|140710|KIAA0889##NM_080627|KIAA0889|140710|KIAA0889##BC127688|C20orf118|140711|chromosome 20 open reading frame 118##BC130646|C20orf118|140711|chromosome 20 open reading frame 118##BC130648|C20orf118|140711|chromosome 20 open reading frame 118##AK123544|C20orf118|140711|chromosome 20 open reading frame 118##NM_080628|C20orf118|140711|chromosome 20 open reading frame 118##HQ258755|C20orf118|140711|chromosome 20 open reading frame 118	0.998582	0.0	denovo_WM_7:-4:0.494	denovo_WM_7:-5:0.494
chr1	102033251	102033376	reg1001372.p1	11.677	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-330743	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-330932	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-541880	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	429174	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	429477	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1463470	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	0.943831	0.984944	CTCF.p2:15:0.985	denovo_WM_7:-22:0.800
chr5	169083242	169083393	reg1001233.p2	11.677	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-19017	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-19073	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-72596	+	AK055998 NM_001129891	324426	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	449654	+	BC030767 NM_001102609 BC092511	576679	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.992951	0.0	denovo_WM_7:18:0.314	denovo_WM_7:19:0.314	denovo_WM_7:20:0.314
chr22	18283798	18283910	reg1000941.p2	11.676	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-26520	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-26631	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-26647	-	TSC_hg19_v1_chr22_-_18484268 AK127487	200374	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	223407	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	276834	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	1.270419	0.0	denovo_WM_7:60:0.232	denovo_WM_7:75:0.331
chr20	47669800	47669939	reg1001178.p1	11.673	+	TSC_hg19_v1_chr20_+_47662875 AF053640	-6981	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	-7043	+	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	-131551	+	TSC_hg19_v1_chr20_-_47804876 AK292859 BC001893 BC010169 AY529074 AK291487 BC007532 AK057739 AK025519 BC095397 AL136601	134917	-	AF061938 AF061939 AF061940 AF061941 AY546099 NM_001037328 NM_004602 NM_017452 NM_017453 NM_017454 TSC_hg19_v1_chr20_-_47804905	135044	-	NM_017895 BC126287 BC130275 BC144125 BC104480 HQ258508 AY044431 AL832131 EU718675 TSC_hg19_v1_chr20_+_47835952 AK300135	166023	+	AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AK292859|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC001893|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC010169|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY529074|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK291487|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC007532|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK057739|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK025519|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC095397|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AL136601|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061938|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061939|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061940|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061941|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY546099|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_001037328|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_004602|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017452|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017453|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017454|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017895|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC126287|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC130275|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC144125|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC104480|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258508|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AY044431|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AL832131|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##EU718675|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK300135|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	1.792442	0.0	denovo_WM_7:21:0.424	denovo_WM_7:22:0.281	denovo_WM_7:36:0.430	denovo_WM_7:37:0.247	denovo_WM_7:38:0.218
chr12	121863050	121863230	reg1000934.p1	11.670	+	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-25176	+	AK025614 NM_001137559	-71129	-	TSC_hg19_v1_chr12_-_121790244 NM_016237	-72874	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	41934	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	155119	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	155774	-	AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##NM_016237|ANAPC5|51433|anaphase promoting complex subunit 5##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B	0.992509	0.0	
chr3	171531864	171532032	reg1001079.p1	11.670	+	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	-3693	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-353877	-	NM_000340	-787181	-	NM_001164436 AK026825	29200	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	225467	+	TSC_hg19_v1_chr3_+_171757437 AK127826	225486	+	AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B	0.0	0.0	
chr3	14475285	14475432	reg1001182.p1	11.669	+	TSC_hg19_v1_chr3_+_14444105 NM_001134367 NM_001134368 NM_003043 AK308417 BC111489 AK307284 AK309534 BC137128 BC137129 BC144490 BC006252 AB209172	-31242	+	TSC_hg19_v1_chr3_+_14444072 AK303649	-31289	+	TSC_hg19_v1_chr3_+_14220355 AJ238095 AB463841 CR457185	-255007	+	NM_001080423	108229	-	TSC_hg19_v1_chr3_+_14693268 NM_016474 AK091158 AX746816 BC005199 BC033897 BC013999	217900	+	AK309525 TSC_hg19_v1_chr3_+_14693279 AF151046	217925	+	NM_001134367|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##NM_001134368|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##NM_003043|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK308417|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC111489|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK307284|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK309534|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC137128|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC137129|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC144490|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC006252|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AB209172|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK303649|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AJ238095|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##CR457185|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001080423|GRIP2|80852|glutamate receptor interacting protein 2##NM_016474|C3orf19|51244|chromosome 3 open reading frame 19##AK091158|C3orf19|51244|chromosome 3 open reading frame 19##BC005199|C3orf19|51244|chromosome 3 open reading frame 19##BC033897|C3orf19|51244|chromosome 3 open reading frame 19##BC013999|C3orf19|51244|chromosome 3 open reading frame 19##AK309525|C3orf19|51244|chromosome 3 open reading frame 19##AF151046|C3orf19|51244|chromosome 3 open reading frame 19	0.998186	0.0	
chr2	30387947	30388075	reg1001462.p1	11.664	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-18135	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	-18178	+	NM_001127399 NM_001127400 NM_001127401 NM_016061 TSC_hg19_v1_chr2_+_30369786	-18241	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	66491	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	282137	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	642282	-	AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127399|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127400|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127401|YPEL5|51646|yippee-like 5 (Drosophila)##NM_016061|YPEL5|51646|yippee-like 5 (Drosophila)##AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13	0.999604	0.546192	CTCF.p2:1:0.482	denovo_WM_7:-42:0.842
chr8	131340738	131340918	reg1000844.p2	11.664	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-311945	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-312134	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-312169	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	115203	-	NM_001115	712006	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1575529	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.998958	0.0	denovo_WM_7:37:0.418	denovo_WM_7:38:0.418
chr1	27772270	27772408	reg1001244.p2	11.659	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-40155	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-53173	+	BC137466 AY358761 NM_207397	-62547	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	44261	-	TSC_hg19_v1_chr1_-_27816670 BC012329	44332	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	44337	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	0.999147	0.0	denovo_WM_7:22:0.739
chr1	46201199	46201357	reg1000867.p1	11.656	+	NM_016486 TSC_hg19_v1_chr1_+_46153865 AK024682 AK308613 BC104636 BC064539 BC013608 AF151063 BC034147 BC046130 BC121117 BC133692	-47403	+	TSC_hg19_v1_chr1_-_46152195 BC068578 NM_021639	-49036	-	BC128177 BC128178 BC029888 BC065201 BC110988 AK310879 AK057646 AK303939 AK298104 NM_001114938 NM_001190182	-111594	-	BC032544 TSC_hg19_v1_chr1_-_46216325 AK023880 NM_001145349 NM_005897	15121	-	TSC_hg19_v1_chr1_+_46269283 AB047005 NM_015112 BC065499	68020	+	TSC_hg19_v1_chr1_+_46379267 AK027123 AK309510	177984	+	NM_016486|TMEM69|51249|transmembrane protein 69##AK024682|TMEM69|51249|transmembrane protein 69##BC104636|TMEM69|51249|transmembrane protein 69##BC064539|TMEM69|51249|transmembrane protein 69##BC013608|TMEM69|51249|transmembrane protein 69##AF151063|TMEM69|51249|transmembrane protein 69##BC034147|TMEM69|51249|transmembrane protein 69##BC046130|TMEM69|51249|transmembrane protein 69##BC121117|TMEM69|51249|transmembrane protein 69##BC133692|TMEM69|51249|transmembrane protein 69##BC068578|GPBP1L1|60313|GC-rich promoter binding protein 1-like 1##NM_021639|GPBP1L1|60313|GC-rich promoter binding protein 1-like 1##BC128177|CCDC17|149483|coiled-coil domain containing 17##BC128178|CCDC17|149483|coiled-coil domain containing 17##BC029888|CCDC17|149483|coiled-coil domain containing 17##BC065201|CCDC17|149483|coiled-coil domain containing 17##BC110988|CCDC17|149483|coiled-coil domain containing 17##AK310879|CCDC17|149483|coiled-coil domain containing 17##AK057646|CCDC17|149483|coiled-coil domain containing 17##AK303939|CCDC17|149483|coiled-coil domain containing 17##AK298104|CCDC17|149483|coiled-coil domain containing 17##NM_001114938|CCDC17|149483|coiled-coil domain containing 17##NM_001190182|CCDC17|149483|coiled-coil domain containing 17##BC032544|IPP|3652|intracisternal A particle-promoted polypeptide##AK023880|IPP|3652|intracisternal A particle-promoted polypeptide##NM_001145349|IPP|3652|intracisternal A particle-promoted polypeptide##NM_005897|IPP|3652|intracisternal A particle-promoted polypeptide##AB047005|MAST2|23139|microtubule associated serine/threonine kinase 2##NM_015112|MAST2|23139|microtubule associated serine/threonine kinase 2##BC065499|MAST2|23139|microtubule associated serine/threonine kinase 2##AK027123|MAST2|23139|microtubule associated serine/threonine kinase 2##AK309510|MAST2|23139|microtubule associated serine/threonine kinase 2	0.991923	0.0	
chr1	155122373	155122530	reg1001195.p2	11.652	+	AB028128 BC032223 BC104202 BC104203 AF312922 NM_018973 AF312923 NM_153741 BC065233 AK293625 TSC_hg19_v1_chr1_-_155113008 BC104481	-9581	-	BC005943 TSC_hg19_v1_chr1_+_155108343 BC010869 BC069245 CR457148 CU679421	-14086	+	TSC_hg19_v1_chr1_+_155108327 AK289551 NM_001122837 NM_001122839 NM_018845 AF126023 BC009621 AF126024 BC012378	-14142	+	TSC_hg19_v1_chr1_-_155145674 BC048205	23234	-	BX647396 TSC_hg19_v1_chr1_-_155145781 AK311907 AK024167 CU691196 DQ890793 DQ893948 BC029806 NM_173852 BC057233	23319	-	AK296300 TSC_hg19_v1_chr1_+_155146298	23833	+	AB028128|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC032223|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC104202|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC104203|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##AF312922|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##NM_018973|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##AF312923|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##NM_153741|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC065233|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##AK293625|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC104481|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC005943|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC010869|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC069245|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##CR457148|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##AK289551|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##NM_001122837|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##NM_001122839|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##NM_018845|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##AF126023|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC009621|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##AF126024|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC012378|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC048205|KRTCAP2|200185|keratinocyte associated protein 2##BX647396|KRTCAP2|200185|keratinocyte associated protein 2##AK311907|KRTCAP2|200185|keratinocyte associated protein 2##AK024167|KRTCAP2|200185|keratinocyte associated protein 2##DQ890793|KRTCAP2|200185|keratinocyte associated protein 2##DQ893948|KRTCAP2|200185|keratinocyte associated protein 2##BC029806|KRTCAP2|200185|keratinocyte associated protein 2##NM_173852|KRTCAP2|200185|keratinocyte associated protein 2##BC057233|KRTCAP2|200185|keratinocyte associated protein 2##AK296300|TRIM46|80128|tripartite motif containing 46	1.992488	0.0	denovo_WM_7:-33:0.237	denovo_WM_7:-34:0.203	denovo_WM_7:-53:0.210	denovo_WM_7:-54:0.243
chr15	57515777	57515917	reg1000969.p1	11.652	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	-4180	+	TSC_hg19_v1_chr15_+_57210977 M83233	-304847	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-304945	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	152870	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	368318	+	TSC_hg19_v1_chr15_+_57998911 AY339380 AY341344 NM_001018102 NM_015532 AK074767 AK074955	483039	+	AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1##AY339380|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##AY341344|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##NM_001018102|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##NM_015532|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##AK074767|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##AK074955|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M	1.822063	0.0	denovo_WM_7:1:0.820	denovo_WM_7:16:0.834
chr22	38240513	38240642	reg1000975.p2	11.652	+	TSC_hg19_v1_chr22_-_38240342 NM_138797	-231	-	CU013021 CU013309 AB462948 CU688190 BC014641 TSC_hg19_v1_chr22_-_38240313 CR456471 BC066909	-295	-	AF073799 NM_003614 AF067733 AY587582	-21177	+	CR456436 AB463035 CU013035 CU013323 NM_001242923 NM_016091 TSC_hg19_v1_chr22_+_38245395	4784	+	TSC_hg19_v1_chr22_+_38245423 AK315533 AK222496 AK293629 AF083243	4839	+	AK129648 AK222529 TSC_hg19_v1_chr22_+_38245425 AK301323 AK302346	4850	+	NM_138797|ANKRD54|129138|ankyrin repeat domain 54##BC014641|ANKRD54|129138|ankyrin repeat domain 54##CR456471|ANKRD54|129138|ankyrin repeat domain 54##BC066909|ANKRD54|129138|ankyrin repeat domain 54##AF073799|GALR3|8484|galanin receptor 3##NM_003614|GALR3|8484|galanin receptor 3##AF067733|GALR3|8484|galanin receptor 3##AY587582|GALR3|8484|galanin receptor 3##CR456436|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##CU013035|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##CU013323|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##NM_001242923|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##NM_016091|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK315533|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK222496|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK293629|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AF083243|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK129648|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK222529|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK301323|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L##AK302346|EIF3L|51386|eukaryotic translation initiation factor 3, subunit L	0.0	0.0	
chr2	43023854	43024034	reg1001207.p5	11.652	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	-4193	-	AY158687 AB528920 AB083055 BC063549 NM_148962	-32644	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-228047	+	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	429401	-	TSC_hg19_v1_chr2_-_43453736 BC020369	429786	-	TSC_hg19_v1_chr2_-_43453744 NM_006887	429798	-	CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	1.40704	0.0	denovo_WM_7:-61:0.687
chr19	15334164	15334324	reg1001363.p1	11.651	+	TSC_hg19_v1_chr19_-_15311808 AB209447 NM_000435 U97669	-22446	-	TSC_hg19_v1_chr19_-_15236518 U61263 BC011761 BC011722 NM_006844	-97708	-	BC000109 TSC_hg19_v1_chr19_-_15236004	-98256	-	BC132958 BC132960 AK026061 NM_024794	8968	-	BC115002 NM_001142886	9568	-	AF386649 NM_014299 NM_058243 Y12059	57017	-	AB209447|NOTCH3|4854|notch 3##NM_000435|NOTCH3|4854|notch 3##U97669|NOTCH3|4854|notch 3##U61263|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC011761|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC011722|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##NM_006844|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC000109|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC132958|EPHX3|79852|epoxide hydrolase 3##BC132960|EPHX3|79852|epoxide hydrolase 3##AK026061|EPHX3|79852|epoxide hydrolase 3##NM_024794|EPHX3|79852|epoxide hydrolase 3##BC115002|EPHX3|79852|epoxide hydrolase 3##NM_001142886|EPHX3|79852|epoxide hydrolase 3##AF386649|BRD4|23476|bromodomain containing 4##NM_014299|BRD4|23476|bromodomain containing 4##NM_058243|BRD4|23476|bromodomain containing 4##Y12059|BRD4|23476|bromodomain containing 4	0.98383	0.0	denovo_WM_7:-29:0.475	denovo_WM_7:-30:0.475
chr11	73046556	73046690	reg1001049.p1	11.650	+	TSC_hg19_v1_chr11_-_73020422 AK300095	-26200	-	BC137228 NM_014786 AF378754	-26958	+	TSC_hg19_v1_chr11_+_73019337 AK074500	-27219	+	TSC_hg19_v1_chr11_+_73087471 AK027899 NM_152222 BC051810 BC017279	40814	+	TSC_hg19_v1_chr11_+_73087683 AF319553 NM_032871	41068	+	D87470 TSC_hg19_v1_chr11_-_73309158 AK292054 EF197985 BC052341 EF363480 NM_015159	262575	-	AK300095|LOC100287837|100287837|uncharacterized LOC100287837##BC137228|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##NM_014786|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##AF378754|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##AK074500|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##AK027899|RELT|84957|RELT tumor necrosis factor receptor##NM_152222|RELT|84957|RELT tumor necrosis factor receptor##BC051810|RELT|84957|RELT tumor necrosis factor receptor##BC017279|RELT|84957|RELT tumor necrosis factor receptor##AF319553|RELT|84957|RELT tumor necrosis factor receptor##NM_032871|RELT|84957|RELT tumor necrosis factor receptor##D87470|FAM168A|23201|family with sequence similarity 168, member A##AK292054|FAM168A|23201|family with sequence similarity 168, member A##EF197985|FAM168A|23201|family with sequence similarity 168, member A##BC052341|FAM168A|23201|family with sequence similarity 168, member A##EF363480|FAM168A|23201|family with sequence similarity 168, member A##NM_015159|FAM168A|23201|family with sequence similarity 168, member A	0.0	0.016797	
chr16	13483904	13484082	reg1001303.p1	11.646	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-488525	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-586274	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-586342	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	530038	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	681093	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	796525	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.994682	0.0	denovo_WM_7:-3:0.481	denovo_WM_7:-4:0.343
chr19	8645837	8645977	reg1001072.p1	11.643	+	TSC_hg19_v1_chr19_-_8642338 AB290178	-3509	-	TSC_hg19_v1_chr19_-_8642317 AK301166 AK310058 AB210037 AK131106 NM_012335	-3585	-	TSC_hg19_v1_chr19_-_8642306 BC028071	-3606	-	TSC_hg19_v1_chr19_-_8675585 AB209515 NM_030957	29685	-	AY248901 AK292258 BC024028 TSC_hg19_v1_chr19_-_8809146 BC045752 NM_178525	163205	-	BC137046 BC151149 NM_001004699	195445	+	AB290178|MYO1F|4542|myosin IF##AK301166|MYO1F|4542|myosin IF##AB210037|MYO1F|4542|myosin IF##AK131106|MYO1F|4542|myosin IF##NM_012335|MYO1F|4542|myosin IF##BC028071|MYO1F|4542|myosin IF##AB209515|ADAMTS10|81794|ADAM metallopeptidase with thrombospondin type 1 motif, 10##NM_030957|ADAMTS10|81794|ADAM metallopeptidase with thrombospondin type 1 motif, 10##AY248901|ACTL9|284382|actin-like 9##AK292258|ACTL9|284382|actin-like 9##BC024028|ACTL9|284382|actin-like 9##BC045752|ACTL9|284382|actin-like 9##NM_178525|ACTL9|284382|actin-like 9##BC137046|OR2Z1|284383|olfactory receptor, family 2, subfamily Z, member 1##BC151149|OR2Z1|284383|olfactory receptor, family 2, subfamily Z, member 1##NM_001004699|OR2Z1|284383|olfactory receptor, family 2, subfamily Z, member 1	0.01491	0.946789	CTCF.p2:-56:0.947
chr11	73062335	73062471	reg1001671.p1	11.640	+	TSC_hg19_v1_chr11_-_73020422 AK300095	-41980	-	BC137228 NM_014786 AF378754	-42738	+	TSC_hg19_v1_chr11_+_73019337 AK074500	-42999	+	TSC_hg19_v1_chr11_+_73087471 AK027899 NM_152222 BC051810 BC017279	25034	+	TSC_hg19_v1_chr11_+_73087683 AF319553 NM_032871	25288	+	D87470 TSC_hg19_v1_chr11_-_73309158 AK292054 EF197985 BC052341 EF363480 NM_015159	246795	-	AK300095|LOC100287837|100287837|uncharacterized LOC100287837##BC137228|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##NM_014786|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##AF378754|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##AK074500|ARHGEF17|9828|Rho guanine nucleotide exchange factor (GEF) 17##AK027899|RELT|84957|RELT tumor necrosis factor receptor##NM_152222|RELT|84957|RELT tumor necrosis factor receptor##BC051810|RELT|84957|RELT tumor necrosis factor receptor##BC017279|RELT|84957|RELT tumor necrosis factor receptor##AF319553|RELT|84957|RELT tumor necrosis factor receptor##NM_032871|RELT|84957|RELT tumor necrosis factor receptor##D87470|FAM168A|23201|family with sequence similarity 168, member A##AK292054|FAM168A|23201|family with sequence similarity 168, member A##EF197985|FAM168A|23201|family with sequence similarity 168, member A##BC052341|FAM168A|23201|family with sequence similarity 168, member A##EF363480|FAM168A|23201|family with sequence similarity 168, member A##NM_015159|FAM168A|23201|family with sequence similarity 168, member A	0.0	0.951369	CTCF.p2:5:0.951
chr19	50410702	50410852	reg1001397.p1	11.638	+	AK074097 BC064378 BC090852 TSC_hg19_v1_chr19_-_50400148 AF293462 AY358933 NM_152899	-10624	-	TSC_hg19_v1_chr19_+_50381392 AK090606 AX746531	-29319	+	NM_001168222 NM_024682 TSC_hg19_v1_chr19_+_50380945 BC003516 AK022230 AK300007 AK309412 AB449903 AB590884 CU678472	-29928	+	CR541721 CU678568 CU690780 AM393785 DQ892591 DQ896857 AB463152 TSC_hg19_v1_chr19_-_50413102 BC014842	2325	-	NM_012068 AK290592	21211	+	NM_001193646 AK091985 AB021663 AK024402 TSC_hg19_v1_chr19_+_50432461 AB073613 BC005174	21657	+	BC064378|IL4I1|259307|interleukin 4 induced 1##BC090852|IL4I1|259307|interleukin 4 induced 1##AF293462|IL4I1|259307|interleukin 4 induced 1##AY358933|IL4I1|259307|interleukin 4 induced 1##NM_152899|IL4I1|259307|interleukin 4 induced 1##AK090606|TBC1D17|79735|TBC1 domain family, member 17##NM_001168222|TBC1D17|79735|TBC1 domain family, member 17##NM_024682|TBC1D17|79735|TBC1 domain family, member 17##BC003516|TBC1D17|79735|TBC1 domain family, member 17##AK022230|TBC1D17|79735|TBC1 domain family, member 17##AK300007|TBC1D17|79735|TBC1 domain family, member 17##AK309412|TBC1D17|79735|TBC1 domain family, member 17##AB449903|TBC1D17|79735|TBC1 domain family, member 17##CR541721|NUP62|23636|nucleoporin 62kDa##AM393785|NUP62|23636|nucleoporin 62kDa##DQ892591|NUP62|23636|nucleoporin 62kDa##DQ896857|NUP62|23636|nucleoporin 62kDa##BC014842|NUP62|23636|nucleoporin 62kDa##NM_012068|ATF5|22809|activating transcription factor 5##AK290592|ATF5|22809|activating transcription factor 5##NM_001193646|ATF5|22809|activating transcription factor 5##AK091985|ATF5|22809|activating transcription factor 5##AB021663|ATF5|22809|activating transcription factor 5##AK024402|ATF5|22809|activating transcription factor 5##AB073613|ATF5|22809|activating transcription factor 5##BC005174|ATF5|22809|activating transcription factor 5	0.993975	0.0	
chr20	46045369	46045491	reg1001052.p1	11.638	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-59942	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-68783	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-117861	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	85192	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	85254	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	369322	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.979153	0.0	denovo_WM_7:-29:0.812
chr14	77532307	77532487	reg1001358.p2	11.637	+	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-37337	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-37713	-	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-239602	+	AK124327 TSC_hg19_v1_chr14_-_77542533	10136	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	32248	+	BC117676 TSC_hg19_v1_chr14_-_77608072	75618	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.992599	0.0	denovo_WM_7:1:0.874
chr11	65175340	65175451	reg1000774.p1	11.636	+	TSC_hg19_v1_chr11_+_65154127 AK074850 BC033851 AK056778 BC044658 AK291678 AK304363 BC051695	-21284	+	NM_031904 TSC_hg19_v1_chr11_+_65154083 BC021094	-21331	+	BC036869 BX648573 NM_001077241 NM_182556	-25271	-	TSC_hg19_v1_chr11_+_65190268 EF177379 GQ859162	14874	+	TSC_hg19_v1_chr11_+_65190274 AK026198	14883	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	17005	+	AK074850|FRMD8|83786|FERM domain containing 8##BC033851|FRMD8|83786|FERM domain containing 8##AK056778|FRMD8|83786|FERM domain containing 8##BC044658|FRMD8|83786|FERM domain containing 8##AK291678|FRMD8|83786|FERM domain containing 8##AK304363|FRMD8|83786|FERM domain containing 8##BC051695|FRMD8|83786|FERM domain containing 8##NM_031904|FRMD8|83786|FERM domain containing 8##BC036869|SLC25A45|283130|solute carrier family 25, member 45##BX648573|SLC25A45|283130|solute carrier family 25, member 45##NM_001077241|SLC25A45|283130|solute carrier family 25, member 45##NM_182556|SLC25A45|283130|solute carrier family 25, member 45##EF177379|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)	0.995579	0.0	denovo_WM_7:-32:0.455	denovo_WM_7:-33:0.455
chr1	52520825	52520966	reg1001226.p2	11.634	+	CU674738 BC008953 TSC_hg19_v1_chr1_-_52520864 AK075409 BC001493 BC008913 AY358982 AF131758	-67	-	CU680254 DQ892239 DQ895439 BC012173 TSC_hg19_v1_chr1_-_52499463 AF327348 NM_138417 AK313746	-21424	-	M28214 BC005035 TSC_hg19_v1_chr1_-_52456373 AK291653 NM_002867	-64532	-	AF543416 NM_015913	151	-	NM_001136497 NM_001243767 NM_152265 TSC_hg19_v1_chr1_+_52521942	1005	+	BC070378 AK027750 TSC_hg19_v1_chr1_+_52521972	1074	+	BC008953|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AK075409|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##BC001493|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##BC008913|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AY358982|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AF131758|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##DQ892239|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##DQ895439|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##BC012173|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##AF327348|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##NM_138417|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##AK313746|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##M28214|RAB3B|5865|RAB3B, member RAS oncogene family##BC005035|RAB3B|5865|RAB3B, member RAS oncogene family##AK291653|RAB3B|5865|RAB3B, member RAS oncogene family##NM_002867|RAB3B|5865|RAB3B, member RAS oncogene family##AF543416|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##NM_015913|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##NM_001136497|BTF3L4|91408|basic transcription factor 3-like 4##NM_001243767|BTF3L4|91408|basic transcription factor 3-like 4##NM_152265|BTF3L4|91408|basic transcription factor 3-like 4##BC070378|BTF3L4|91408|basic transcription factor 3-like 4##AK027750|BTF3L4|91408|basic transcription factor 3-like 4	0.035158	0.0	
chr3	186882970	186883098	reg1001077.p2	11.634	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	-25778	-	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-143362	+	U67847 TSC_hg19_v1_chr3_+_186714361	-168686	+	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	32308	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	126605	-	BC013161 NM_022147 AJ251832 AY562238 DQ891046 DQ894225	203164	+	L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC013161|RTP4|64108|receptor (chemosensory) transporter protein 4##NM_022147|RTP4|64108|receptor (chemosensory) transporter protein 4##AJ251832|RTP4|64108|receptor (chemosensory) transporter protein 4##AY562238|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ891046|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ894225|RTP4|64108|receptor (chemosensory) transporter protein 4	0.995312	0.839044	CTCF.p2:9:0.839	denovo_WM_7:-41:0.894
chr10	26863931	26864091	reg1001265.p1	11.633	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-136305	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-136343	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-136694	+	AK096048 TSC_hg19_v1_chr10_-_26986612	122573	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	122635	+	TSC_hg19_v1_chr10_-_27057776 AK315914	193806	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	0.990221	0.0	denovo_WM_7:19:0.435	denovo_WM_7:20:0.435
chr5	140709956	140710083	reg1000987.p1	11.628	+	TSC_hg19_v1_chr5_-_140700346 NM_005642	-9667	-	U18062 TSC_hg19_v1_chr5_-_140700329 BC032737 X97999 BC022798 BC013397 AK314837	-9710	-	AF332005 BC069458 BC100935 BC100936 BC100937 AY208943 AF378119 NM_031947	-26498	-	BC112082 BC112084 AF152318 AF152507 NM_018912 NM_031993	208	+	NM_018915 NM_032009 BC093871 BC104950 AF152322 AF152508	8426	+	AF152323 AF152509 AF152510 BC115408 BC115409 NM_018916 NM_032011 BC133708	13582	+	NM_005642|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##U18062|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##BC032737|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##X97999|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##BC022798|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##BC013397|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##AK314837|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##AF332005|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC069458|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC100935|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC100936|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC100937|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##AY208943|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##AF378119|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##NM_031947|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC112082|PCDHGA1|56114|protocadherin gamma subfamily A, 1##BC112084|PCDHGA1|56114|protocadherin gamma subfamily A, 1##AF152318|PCDHGA1|56114|protocadherin gamma subfamily A, 1##AF152507|PCDHGA1|56114|protocadherin gamma subfamily A, 1##NM_018912|PCDHGA1|56114|protocadherin gamma subfamily A, 1##NM_031993|PCDHGA1|56114|protocadherin gamma subfamily A, 1##NM_018915|PCDHGA2|56113|protocadherin gamma subfamily A, 2##NM_032009|PCDHGA2|56113|protocadherin gamma subfamily A, 2##BC093871|PCDHGA2|56113|protocadherin gamma subfamily A, 2##BC104950|PCDHGA2|56113|protocadherin gamma subfamily A, 2##AF152322|PCDHGA2|56113|protocadherin gamma subfamily A, 2##AF152508|PCDHGA2|56113|protocadherin gamma subfamily A, 2##AF152323|PCDHGA3|56112|protocadherin gamma subfamily A, 3##AF152509|PCDHGA3|56112|protocadherin gamma subfamily A, 3##AF152510|PCDHGA3|56112|protocadherin gamma subfamily A, 3##BC115408|PCDHGA3|56112|protocadherin gamma subfamily A, 3##BC115409|PCDHGA3|56112|protocadherin gamma subfamily A, 3##NM_018916|PCDHGA3|56112|protocadherin gamma subfamily A, 3##NM_032011|PCDHGA3|56112|protocadherin gamma subfamily A, 3##BC133708|PCDHGA3|56112|protocadherin gamma subfamily A, 3	1.016298	0.0	denovo_WM_7:26:0.493
chr7	69289399	69289557	reg1001194.p1	11.624	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-224890	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-225149	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-225642	+	TSC_hg19_v1_chr7_+_70231164 AK296981	941727	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1308310	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2512300	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	1.385492	0.0	denovo_WM_7:47:0.345	denovo_WM_7:-73:0.294	denovo_WM_7:-74:0.319	denovo_WM_7:-75:0.324
chr7	26136857	26137003	reg1001364.p1	11.619	+	AB040290 AF330057 AF440392 NM_022150	-868850	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-917059	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	-971990	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	55003	+	TSC_hg19_v1_chr7_-_26232151 BX538099	95221	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	103411	-	AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.994636	0.0	
chr15	55401107	55401277	reg1001331.p1	11.617	+	NM_001080534	-1096092	+	AK096055 BX537884 NM_182758	-1349345	-	AB463985 BC140830 NM_004498 U96173 TSC_hg19_v1_chr15_-_53082301	-2318998	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	87900	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	87987	-	AF125393 NM_183234 U57094 U38654 NM_004580	161345	-	NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AK096055|WDR72|256764|WD repeat domain 72##BX537884|WDR72|256764|WD repeat domain 72##NM_182758|WDR72|256764|WD repeat domain 72##BC140830|ONECUT1|3175|one cut homeobox 1##NM_004498|ONECUT1|3175|one cut homeobox 1##U96173|ONECUT1|3175|one cut homeobox 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family	1.710856	0.213796	denovo_WM_7:-37:0.437	denovo_WM_7:-38:0.266	denovo_WM_7:-52:0.411	denovo_WM_7:-54:0.244	CTCF.p2:60:0.214
chr7	102085666	102085810	reg1001267.p2	11.616	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-11697	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-11761	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-48896	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	19495	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	19579	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	19670	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	0.993547	0.0	denovo_WM_7:8:0.330	denovo_WM_7:11:0.520
chr7	70181588	70181725	reg1001131.p1	11.615	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1117068	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1117327	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1117820	+	TSC_hg19_v1_chr7_+_70231164 AK296981	49549	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	416132	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1620122	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	1.992301	0.0	denovo_WM_7:-11:0.917	denovo_WM_7:-26:0.948
chr15	33455403	33455522	reg1000845.p1	11.611	+	NM_001103184 BC101971 BC103692 BC107593 TSC_hg19_v1_chr15_-_33360376 AL833157	-95227	-	TSC_hg19_v1_chr15_-_33011125 AK093166 AX747968	-444296	-	AK095741 TSC_hg19_v1_chr15_+_33010204 AK095890 AK095972 AK312265 NM_001191322 NM_001191323 NM_013372 AY232290 AF110137 BC093778 BC101611	-445205	+	AB001025 TSC_hg19_v1_chr15_+_33603167 AJ001515 NM_001036 NM_001243996	147707	+	TSC_hg19_v1_chr15_-_34212524 BC037796	757096	-	AK095198 NM_012125	805626	+	NM_001103184|FMN1|342184|formin 1##BC103692|FMN1|342184|formin 1##BC107593|FMN1|342184|formin 1##AL833157|FMN1|342184|formin 1##AK095741|GREM1|26585|gremlin 1##AK095890|GREM1|26585|gremlin 1##AK095972|GREM1|26585|gremlin 1##AK312265|GREM1|26585|gremlin 1##NM_001191322|GREM1|26585|gremlin 1##NM_001191323|GREM1|26585|gremlin 1##NM_013372|GREM1|26585|gremlin 1##AY232290|GREM1|26585|gremlin 1##AF110137|GREM1|26585|gremlin 1##BC093778|GREM1|26585|gremlin 1##BC101611|GREM1|26585|gremlin 1##AB001025|RYR3|6263|ryanodine receptor 3##AJ001515|RYR3|6263|ryanodine receptor 3##NM_001036|RYR3|6263|ryanodine receptor 3##NM_001243996|RYR3|6263|ryanodine receptor 3##AK095198|CHRM5|1133|cholinergic receptor, muscarinic 5##NM_012125|CHRM5|1133|cholinergic receptor, muscarinic 5	0.986507	0.0	denovo_WM_7:39:0.566	denovo_WM_7:42:0.377
chr5	124077041	124077199	reg1001088.p2	11.604	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1229238	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1317976	-	NM_001136239 AK297992 AF272898 AF272899	-1652276	+	BC131507 AB033107 BC151226 NM_020747	3668	-	NM_001146319 AK316288 AK300154	1618694	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1681723	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.989079	0.0	
chr19	18197706	18197885	reg1001219.p1	11.601	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	-63	-	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	-78777	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	-85845	+	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	10814	+	BC063240 TSC_hg19_v1_chr19_+_18263972	66186	+	TSC_hg19_v1_chr19_+_18264004 BC070082 NM_005027 BC090249	66237	+	EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3##BC070082|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_005027|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##BC090249|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)	1.065232	0.0	denovo_WM_7:-41:0.213	denovo_WM_7:-42:0.396
chr22	17761271	17761418	reg1001414.p2	11.599	+	TSC_hg19_v1_chr22_-_17747522 AF277398	-13773	-	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-60981	-	AF190746 NM_017424	-70566	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	281875	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	350101	-	TSC_hg19_v1_chr22_-_18111509 AK312394	350162	-	AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##AK312394|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.997198	0.0	denovo_WM_7:-46:0.976
chr3	101757289	101757469	reg1000999.p2	11.598	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-189005	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-210419	+	AK289689 NM_001134456	-259094	+	AY090780 NM_175056 BC143817	396488	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3328201	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3328443	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	1.474611	0.0	
chr5	131693693	131693868	reg1001190.p1	11.598	+	TSC_hg19_v1_chr5_-_131630942 BC030525	-62807	-	TSC_hg19_v1_chr5_+_131630078 AK309243 BC028313 NM_003059 Y09881 AB007448 AB529182 DQ890816 DQ893972	-63594	+	AK225407 X93510 TSC_hg19_v1_chr5_+_131593388 BC003096 AB528934 BT007019 CU677715	-100373	+	BX538252 TSC_hg19_v1_chr5_-_131705330	11519	-	TSC_hg19_v1_chr5_+_131705407 NM_003060 AF057164 BC012325 AB015050 AK313230 CU680286 DQ893671 DQ895818 AB291606	11728	+	TSC_hg19_v1_chr5_+_131746621 AK096941 AK309191 AK128882	52848	+	BC028313|SLC22A4|6583|solute carrier family 22 (organic cation/ergothioneine transporter), member 4##NM_003059|SLC22A4|6583|solute carrier family 22 (organic cation/ergothioneine transporter), member 4##Y09881|SLC22A4|6583|solute carrier family 22 (organic cation/ergothioneine transporter), member 4##AB007448|SLC22A4|6583|solute carrier family 22 (organic cation/ergothioneine transporter), member 4##DQ890816|SLC22A4|6583|solute carrier family 22 (organic cation/ergothioneine transporter), member 4##DQ893972|SLC22A4|6583|solute carrier family 22 (organic cation/ergothioneine transporter), member 4##AK225407|PDLIM4|8572|PDZ and LIM domain 4##X93510|PDLIM4|8572|PDZ and LIM domain 4##BC003096|PDLIM4|8572|PDZ and LIM domain 4##BT007019|PDLIM4|8572|PDZ and LIM domain 4##BX538252|LOC553103|553103|uncharacterized LOC553103##NM_003060|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AF057164|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC012325|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB015050|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK313230|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ893671|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ895818|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB291606|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK096941|C5orf56|441108|chromosome 5 open reading frame 56##AK309191|C5orf56|441108|chromosome 5 open reading frame 56##AK128882|C5orf56|441108|chromosome 5 open reading frame 56	0.993792	0.0	denovo_WM_7:-52:0.248	denovo_WM_7:-53:0.248	denovo_WM_7:-54:0.248	denovo_WM_7:-55:0.248
chr18	12839843	12840023	reg1001193.p3	11.592	+	TSC_hg19_v1_chr18_+_12703040 NM_020232 AK225882 AF168712 AK057005 BC013356 CU680576	-136897	+	TSC_hg19_v1_chr18_-_12702776 AK298223	-137169	-	TSC_hg19_v1_chr18_-_12702689 AK022604 BC033026 AL833727 BC026307 NM_024899 AK303117	-137258	-	CU678897 AB590517 BC008244 TSC_hg19_v1_chr18_-_12884237 M25393 AK225706 AK290649 AK292570 BC016727 NM_001207013 NM_002828 NM_080422 NM_080423	44303	-	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	108052	+	TSC_hg19_v1_chr18_+_12948009 AK314403	108073	+	NM_020232|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK225882|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF168712|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK057005|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##BC013356|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK298223|CEP76|79959|centrosomal protein 76kDa##AK022604|CEP76|79959|centrosomal protein 76kDa##BC033026|CEP76|79959|centrosomal protein 76kDa##AL833727|CEP76|79959|centrosomal protein 76kDa##BC026307|CEP76|79959|centrosomal protein 76kDa##NM_024899|CEP76|79959|centrosomal protein 76kDa##AK303117|CEP76|79959|centrosomal protein 76kDa##BC008244|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##M25393|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK225706|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK290649|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK292570|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##BC016727|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001207013|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_002828|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080422|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080423|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)	0.990364	0.0	denovo_WM_7:16:0.369	denovo_WM_7:17:0.571
chrX	57945634	57945758	reg1001548.p1	11.592	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-8737	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-327236	+	NM_007157	-327428	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4625503	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4702571	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4835171	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.99684	0.992084	CTCF.p2:7:0.992	denovo_WM_7:-22:0.975
chrX	148368482	148368616	reg1001486.p1	11.591	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	-567937	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	-786361	+	BC034320 NM_152578 AY211917 AK098602	-1305694	+	CU675281 AF050145 BC006170 TSC_hg19_v1_chrX_-_148586837 BX647357 L40586 M58342 AK294541 NM_000202 NM_001166550 NM_006123	218225	-	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	253881	-	NM_001171907 NM_001171908 NM_178124 U66049 AK294153 AY074889 AK291899 BC065539 BC104930 BC104932 BC143660 BC143661 BC143662	254045	+	AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2##NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##AF050145|IDS|3423|iduronate 2-sulfatase##BC006170|IDS|3423|iduronate 2-sulfatase##BX647357|IDS|3423|iduronate 2-sulfatase##L40586|IDS|3423|iduronate 2-sulfatase##M58342|IDS|3423|iduronate 2-sulfatase##AK294541|IDS|3423|iduronate 2-sulfatase##NM_000202|IDS|3423|iduronate 2-sulfatase##NM_001166550|IDS|3423|iduronate 2-sulfatase##NM_006123|IDS|3423|iduronate 2-sulfatase##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434##NM_001171907|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171908|CXorf40A|91966|chromosome X open reading frame 40A##NM_178124|CXorf40A|91966|chromosome X open reading frame 40A##U66049|CXorf40A|91966|chromosome X open reading frame 40A##AK294153|CXorf40A|91966|chromosome X open reading frame 40A##AY074889|CXorf40A|91966|chromosome X open reading frame 40A##AK291899|CXorf40A|91966|chromosome X open reading frame 40A##BC065539|CXorf40A|91966|chromosome X open reading frame 40A##BC104930|CXorf40A|91966|chromosome X open reading frame 40A##BC104932|CXorf40A|91966|chromosome X open reading frame 40A##BC143660|CXorf40A|91966|chromosome X open reading frame 40A##BC143661|CXorf40A|91966|chromosome X open reading frame 40A##BC143662|CXorf40A|91966|chromosome X open reading frame 40A	0.0	0.830808	CTCF.p2:23:0.831
chr6	152589490	152589620	reg1001206.p2	11.587	+	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	-460689	+	NM_001122740 U68067	-461102	+	NM_001122741 AK293019 AK313644	-462732	+	TSC_hg19_v1_chr6_-_152623240 AK310977	33696	-	TSC_hg19_v1_chr6_-_152702331 BX537517	112786	-	AK056122 TSC_hg19_v1_chr6_-_152702456 BC039121	112919	-	X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##NM_001122741|ESR1|2099|estrogen receptor 1##AK293019|ESR1|2099|estrogen receptor 1##AK313644|ESR1|2099|estrogen receptor 1##AK310977|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##BX537517|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AK056122|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##BC039121|SYNE1|23345|spectrin repeat containing, nuclear envelope 1	0.993986	0.817459	denovo_WM_7:-22:0.459	denovo_WM_7:-23:0.459	CTCF.p2:27:0.817
chr20	271197	271340	reg1000725.p1	11.585	+	TSC_hg19_v1_chr20_-_271080 AK091924 AX747257 AK304526 BX640715 BC051762	-194	-	AY358708 EF426755 NM_207469 BC137292 BC137293 AF525932 AY621329	-32871	+	BC070359 NM_080831 AY122480 AY358186 CU687092 HQ447599 AF525931 AF529413	-63355	+	AK302223 TSC_hg19_v1_chr20_-_271367 BC134417 BC137450 BC144648 BC144649 AK097394 NM_080571 NM_153269	96	-	TSC_hg19_v1_chr20_+_278213 BC069238 NM_033089 AK025768 BC107584 BC036469	6941	+	TSC_hg19_v1_chr20_+_306226 BC067361 NM_006943 U35612 BC028103	34968	+	AK091924|C20orf96|140680|chromosome 20 open reading frame 96##AK304526|C20orf96|140680|chromosome 20 open reading frame 96##BX640715|C20orf96|140680|chromosome 20 open reading frame 96##BC051762|C20orf96|140680|chromosome 20 open reading frame 96##AY358708|DEFB132|400830|defensin, beta 132##EF426755|DEFB132|400830|defensin, beta 132##NM_207469|DEFB132|400830|defensin, beta 132##BC137292|DEFB132|400830|defensin, beta 132##BC137293|DEFB132|400830|defensin, beta 132##AF525932|DEFB132|400830|defensin, beta 132##AY621329|DEFB132|400830|defensin, beta 132##BC070359|DEFB129|140881|defensin, beta 129##NM_080831|DEFB129|140881|defensin, beta 129##AY122480|DEFB129|140881|defensin, beta 129##AY358186|DEFB129|140881|defensin, beta 129##HQ447599|DEFB129|140881|defensin, beta 129##AF525931|DEFB129|140881|defensin, beta 129##AF529413|DEFB129|140881|defensin, beta 129##AK302223|C20orf96|140680|chromosome 20 open reading frame 96##BC134417|C20orf96|140680|chromosome 20 open reading frame 96##BC137450|C20orf96|140680|chromosome 20 open reading frame 96##BC144648|C20orf96|140680|chromosome 20 open reading frame 96##BC144649|C20orf96|140680|chromosome 20 open reading frame 96##AK097394|C20orf96|140680|chromosome 20 open reading frame 96##NM_080571|C20orf96|140680|chromosome 20 open reading frame 96##NM_153269|C20orf96|140680|chromosome 20 open reading frame 96##BC069238|ZCCHC3|85364|zinc finger, CCHC domain containing 3##NM_033089|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK025768|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC107584|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC036469|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC067361|SOX12|6666|SRY (sex determining region Y)-box 12##NM_006943|SOX12|6666|SRY (sex determining region Y)-box 12##U35612|SOX12|6666|SRY (sex determining region Y)-box 12##BC028103|SOX12|6666|SRY (sex determining region Y)-box 12	0.996895	0.0	
chr4	14307693	14307805	reg1001123.p2	11.585	+	TSC_hg19_v1_chr4_-_13629350 BC065546 BC043603 AF528529 NM_148894 BC087835	-678432	-	TSC_hg19_v1_chr4_-_13549425 BC035174 AK058104 BC048110 BC053955	-758335	-	AB463932 AF009801 EU446467 BC111966 NM_001189	-761674	-	BC039114 BC044764 BC047127 TSC_hg19_v1_chr4_-_15003743	695960	-	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	696246	-	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	696548	+	BC065546|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC043603|BOD1L|259282|biorientation of chromosomes in cell division 1-like##AF528529|BOD1L|259282|biorientation of chromosomes in cell division 1-like##NM_148894|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC087835|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC035174|LOC285548|285548|uncharacterized LOC285548##AK058104|LOC285548|285548|uncharacterized LOC285548##BC048110|LOC285548|285548|uncharacterized LOC285548##BC053955|LOC285548|285548|uncharacterized LOC285548##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2##BC039114|LOC441009|441009|uncharacterized LOC441009##BC044764|LOC441009|441009|uncharacterized LOC441009##BC047127|LOC441009|441009|uncharacterized LOC441009##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2	1.996684	0.0	denovo_WM_7:37:0.817
chr7	104960220	104960381	reg1001070.p2	11.585	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-50817	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-207922	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-278886	+	TSC_hg19_v1_chr7_-_105029265 AB489157	68965	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	69042	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	202361	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.990344	0.0	denovo_WM_7:15:0.835
chr15	34626224	34626404	reg1001220.p3	11.583	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-15336	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-109074	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-124013	-	AF105366 AF531258 NM_001042497 NM_133647	2730	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	3649	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	3943	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.995037	0.0	denovo_WM_7:-32:0.295
chr17	3614554	3614667	reg1000994.p2	11.577	+	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-15018	-	BC006220 BC028084 TSC_hg19_v1_chr17_-_3599406 BC039015	-15206	-	DQ234349 CU691640 AB528606 TSC_hg19_v1_chr17_-_3599311 AF070573 AF016709 U49395 U49396	-15298	-	TSC_hg19_v1_chr17_-_3627077 AF289864	12492	-	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	12606	+	HQ258689 TSC_hg19_v1_chr17_-_3704463	89843	-	AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC006220|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC028084|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC039015|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##DQ234349|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF070573|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF016709|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49395|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49396|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)	1.98583	0.0	denovo_WM_7:61:0.249	denovo_WM_7:62:0.671	denovo_WM_7:77:0.819
chr18	19770910	19771047	reg1001121.p1	11.569	+	X95701 BC027891 NM_005257 TSC_hg19_v1_chr18_+_19749549	-21502	+	AK123079 TSC_hg19_v1_chr18_-_19749029	-21992	-	CR749635 TSC_hg19_v1_chr18_+_19353654	-417331	+	HQ258502 BC132871 AF273058 BC031065 BC070128 NM_172241	226847	-	TSC_hg19_v1_chr18_+_20513319 NM_002894 U72066 AK292481	742370	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	742837	+	X95701|GATA6|2627|GATA binding protein 6##BC027891|GATA6|2627|GATA binding protein 6##NM_005257|GATA6|2627|GATA binding protein 6##AK123079|LOC100128893|100128893|uncharacterized LOC100128893##CR749635|MIB1|57534|mindbomb homolog 1 (Drosophila)##HQ258502|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC132871|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##AF273058|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC031065|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC070128|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_172241|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_002894|RBBP8|5932|retinoblastoma binding protein 8##U72066|RBBP8|5932|retinoblastoma binding protein 8##AK292481|RBBP8|5932|retinoblastoma binding protein 8##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8	0.994752	0.0	denovo_WM_7:1:0.736
chr2	86586258	86586382	reg1000863.p1	11.568	+	AK297287 NM_001164730	-21115	-	AY562239 CR457301 CU687956 AK297201 TSC_hg19_v1_chr2_-_86564750 BC064846 AK294300 AK297359 AK297373 AK299334 AK023172 NM_001164731 NM_001164732 NM_022912	-21587	-	NM_016622 NM_145644 TSC_hg19_v1_chr2_+_86426604 BC020651 AK074352 AK314555 AK314577 AF208849 AL832982 CU676602	-159736	+	NM_018433	81950	+	TSC_hg19_v1_chr2_+_86668482 BX647752 BX640698	82135	+	TSC_hg19_v1_chr2_+_86668501 BC038297 BX647271 BX649109 CR749581 AB018285 BX648841 NM_001146688	82215	+	AK297287|REEP1|65055|receptor accessory protein 1##NM_001164730|REEP1|65055|receptor accessory protein 1##AY562239|REEP1|65055|receptor accessory protein 1##CR457301|REEP1|65055|receptor accessory protein 1##AK297201|REEP1|65055|receptor accessory protein 1##BC064846|REEP1|65055|receptor accessory protein 1##AK294300|REEP1|65055|receptor accessory protein 1##AK297359|REEP1|65055|receptor accessory protein 1##AK297373|REEP1|65055|receptor accessory protein 1##AK299334|REEP1|65055|receptor accessory protein 1##AK023172|REEP1|65055|receptor accessory protein 1##NM_001164731|REEP1|65055|receptor accessory protein 1##NM_001164732|REEP1|65055|receptor accessory protein 1##NM_022912|REEP1|65055|receptor accessory protein 1##NM_016622|MRPL35|51318|mitochondrial ribosomal protein L35##NM_145644|MRPL35|51318|mitochondrial ribosomal protein L35##BC020651|MRPL35|51318|mitochondrial ribosomal protein L35##AK074352|MRPL35|51318|mitochondrial ribosomal protein L35##AK314555|MRPL35|51318|mitochondrial ribosomal protein L35##AK314577|MRPL35|51318|mitochondrial ribosomal protein L35##AF208849|MRPL35|51318|mitochondrial ribosomal protein L35##AL832982|MRPL35|51318|mitochondrial ribosomal protein L35##NM_018433|KDM3A|55818|lysine (K)-specific demethylase 3A##BX647752|KDM3A|55818|lysine (K)-specific demethylase 3A##BX640698|KDM3A|55818|lysine (K)-specific demethylase 3A##BC038297|KDM3A|55818|lysine (K)-specific demethylase 3A##BX647271|KDM3A|55818|lysine (K)-specific demethylase 3A##BX649109|KDM3A|55818|lysine (K)-specific demethylase 3A##CR749581|KDM3A|55818|lysine (K)-specific demethylase 3A##AB018285|KDM3A|55818|lysine (K)-specific demethylase 3A##BX648841|KDM3A|55818|lysine (K)-specific demethylase 3A##NM_001146688|KDM3A|55818|lysine (K)-specific demethylase 3A	0.993926	0.0	denovo_WM_7:11:0.971
chr10	6092911	6093064	reg1000979.p1	11.566	+	AF035279 BC107777 BC065506 NM_001243539	-72973	-	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	-73474	-	AF380349 NM_032807	-156639	+	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	11235	-	TSC_hg19_v1_chr10_+_6130954 NM_032905	37962	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	38012	+	AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##AF380349|FBXO18|84893|F-box protein, helicase, 18##NM_032807|FBXO18|84893|F-box protein, helicase, 18##AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha##NM_032905|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17	0.995665	0.0	denovo_WM_7:39:0.983
chr3	16926326	16926441	reg1001064.p2	11.565	+	U65918 U66726 U66078 BC027595 NM_001351	-279417	-	BX648638 AK303026 NM_001190811	-280113	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-371159	-	AB029015 NM_001144382	68	+	BC036392 NM_015184	48198	+	AK310539 NM_001134381	815128	-	U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5	0.999395	0.0	denovo_WM_7:16:0.739
chr19	1099574	1099701	reg1001766.p1	11.561	+	TSC_hg19_v1_chr19_-_1095383 NM_002695	-4245	-	AK122813 TSC_hg19_v1_chr19_-_1095375	-4262	-	AB464042 TSC_hg19_v1_chr19_-_1095353 AK295975 BC004441 D38251 J04965 AK312625 BC034144	-4294	-	BC039849 NM_001039847 NM_002085 TSC_hg19_v1_chr19_+_1103992 X71973 BC022071 BC011836 BC032695 AK225859	4333	+	BC058329 TSC_hg19_v1_chr19_+_1104061 BC021567 BC046163 CU692482	4399	+	TSC_hg19_v1_chr19_+_1104068 BC010157	4455	+	NM_002695|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK122813|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK295975|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC004441|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##D38251|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##J04965|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK312625|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC034144|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC039849|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##NM_001039847|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##NM_002085|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##X71973|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC022071|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC011836|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC032695|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##AK225859|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC058329|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC021567|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC046163|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC010157|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)	0.979605	0.0	denovo_WM_7:-49:0.595	denovo_WM_7:-50:0.384
chr16	25060666	25060842	reg1001356.p2	11.559	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-34062	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-34142	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-91862	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	17535	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	62307	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	62443	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	0.995286	0.0	
chr16	28485170	28485325	reg1001000.p2	11.559	+	BC157842 AK292155 NM_001199142	-47529	-	AK055366 AK299421 AK303790 AK304500 TSC_hg19_v1_chr16_-_28415162 AK301233 AK301183 NM_001099661 BC107692 NM_001037808 NM_003752	-70090	-	DQ891632 DQ894822 AB527254 BC157849 BC071705 AK000739 AK293264 AY762099 TSC_hg19_v1_chr16_-_28415133 BC000533 BC001571	-70206	-	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	17993	-	NM_001042432	18375	-	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	20715	+	BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK055366|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK299421|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK303790|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK304500|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301233|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301183|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001099661|EIF3CL|728689|eukaryotic translation initiation factor 3, subunit C-like##BC107692|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001037808|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_003752|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ891632|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ894822|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC157849|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC071705|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK000739|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK293264|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AY762099|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC000533|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC001571|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor	0.994167	0.0	denovo_WM_7:40:0.517	denovo_WM_7:43:0.327
chr2	102699658	102699813	reg1001439.p1	11.559	+	BC027733 BC012346 NM_173343	-84278	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-91372	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-191203	+	TSC_hg19_v1_chr2_+_102759205 X16896	59497	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	70685	+	AF284434 NM_003854 U49065 BC107064	103713	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.789136	0.0	denovo_WM_7:66:0.665
chr2	197162981	197163144	reg1001173.p2	11.555	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-126744	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-126783	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-229567	-	BC117194 BC117198 AB037722 NM_020760	294230	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	341295	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	501351	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.920963	0.62861	denovo_WM_7:19:0.581	denovo_WM_7:21:0.252	CTCF.p2:-26:0.629
chr8	25027820	25027968	reg1001197.p1	11.555	+	AY156690 CU688222 CU691684 AB463926 DQ892646 DQ895884 AK075003 AK127430 AK225975 AK299095 AK314591 BC039237 BC066952 TSC_hg19_v1_chr8_-_24814127 AK057731 NM_006158	-213814	-	TSC_hg19_v1_chr8_+_24774588 AF181990	-253261	+	NM_001105541 AK294681	-255419	+	TSC_hg19_v1_chr8_+_25042229 BC015352	14263	+	TSC_hg19_v1_chr8_+_25042294 BC011877 NM_024940 AK123607	14383	+	BC137175 BC137176 TSC_hg19_v1_chr8_+_25042406	14506	+	AY156690|NEFL|4747|neurofilament, light polypeptide##DQ892646|NEFL|4747|neurofilament, light polypeptide##DQ895884|NEFL|4747|neurofilament, light polypeptide##AK075003|NEFL|4747|neurofilament, light polypeptide##AK127430|NEFL|4747|neurofilament, light polypeptide##AK225975|NEFL|4747|neurofilament, light polypeptide##AK299095|NEFL|4747|neurofilament, light polypeptide##AK314591|NEFL|4747|neurofilament, light polypeptide##BC039237|NEFL|4747|neurofilament, light polypeptide##BC066952|NEFL|4747|neurofilament, light polypeptide##AK057731|NEFL|4747|neurofilament, light polypeptide##NM_006158|NEFL|4747|neurofilament, light polypeptide##AF181990|NEFM|4741|neurofilament, medium polypeptide##NM_001105541|NEFM|4741|neurofilament, medium polypeptide##AK294681|NEFM|4741|neurofilament, medium polypeptide##BC015352|DOCK5|80005|dedicator of cytokinesis 5##BC011877|DOCK5|80005|dedicator of cytokinesis 5##NM_024940|DOCK5|80005|dedicator of cytokinesis 5##AK123607|DOCK5|80005|dedicator of cytokinesis 5##BC137175|DOCK5|80005|dedicator of cytokinesis 5##BC137176|DOCK5|80005|dedicator of cytokinesis 5	0.982805	0.895047	CTCF.p2:-29:0.895
chr9	130793449	130793592	reg1001185.p2	11.554	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-50711	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-80589	-	BC015233 NM_003863	-92758	-	AK122729 NM_197956	36078	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	36963	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	37099	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.998461	0.0	
chr2	65659705	65659866	reg1001149.p1	11.551	+	TSC_hg19_v1_chr2_-_65659661 BC111495 NM_181784	-109	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	-573	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	-65887	-	TSC_hg19_v1_chr2_+_65663818 AK131224 BC033059	4052	+	AL832770 BC043503 NM_002398	1002738	+	BC036511 AK314949 TSC_hg19_v1_chr2_+_66662903 U85707 AB527915	1003055	+	BC111495|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_181784|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK131224|FLJ16124|440867|FLJ16124 protein##BC033059|FLJ16124|440867|FLJ16124 protein##AL832770|MEIS1|4211|Meis homeobox 1##BC043503|MEIS1|4211|Meis homeobox 1##NM_002398|MEIS1|4211|Meis homeobox 1##BC036511|MEIS1|4211|Meis homeobox 1##AK314949|MEIS1|4211|Meis homeobox 1##U85707|MEIS1|4211|Meis homeobox 1	0.980386	0.0	denovo_WM_7:-8:0.203	denovo_WM_7:-9:0.777
chr10	82142919	82143033	reg1001007.p2	11.549	+	AK093378 AX748088 NM_032372	-26419	+	BC019250 NM_138812 AK125908 AK292542	-26472	-	DQ891073 DQ894256 D49357 X69078 AK290820 BC018359 TSC_hg19_v1_chr10_-_82049413 NM_000429	-93671	-	NM_001243779	24608	+	TSC_hg19_v1_chr10_+_82168316 NM_001243780 NM_001243781 NM_032333 AK075447 AK074643 AK315440 AY359059	25327	+	NM_001243778 NM_001243782 TSC_hg19_v1_chr10_+_82173588 AK126292 AK225387 BC005871 BC071938	30617	+	AK093378|DYDC2|84332|DPY30 domain containing 2##NM_032372|DYDC2|84332|DPY30 domain containing 2##BC019250|DYDC1|143241|DPY30 domain containing 1##NM_138812|DYDC1|143241|DPY30 domain containing 1##AK125908|DYDC1|143241|DPY30 domain containing 1##AK292542|DYDC1|143241|DPY30 domain containing 1##DQ891073|MAT1A|4143|methionine adenosyltransferase I, alpha##DQ894256|MAT1A|4143|methionine adenosyltransferase I, alpha##D49357|MAT1A|4143|methionine adenosyltransferase I, alpha##X69078|MAT1A|4143|methionine adenosyltransferase I, alpha##AK290820|MAT1A|4143|methionine adenosyltransferase I, alpha##BC018359|MAT1A|4143|methionine adenosyltransferase I, alpha##NM_000429|MAT1A|4143|methionine adenosyltransferase I, alpha##NM_001243779|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243780|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243781|C10orf58|84293|chromosome 10 open reading frame 58##NM_032333|C10orf58|84293|chromosome 10 open reading frame 58##AK075447|C10orf58|84293|chromosome 10 open reading frame 58##AK074643|C10orf58|84293|chromosome 10 open reading frame 58##AK315440|C10orf58|84293|chromosome 10 open reading frame 58##AY359059|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243778|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243782|C10orf58|84293|chromosome 10 open reading frame 58##AK126292|C10orf58|84293|chromosome 10 open reading frame 58##AK225387|C10orf58|84293|chromosome 10 open reading frame 58##BC005871|C10orf58|84293|chromosome 10 open reading frame 58##BC071938|C10orf58|84293|chromosome 10 open reading frame 58	1.13849	0.0	denovo_WM_7:73:0.340
chr1	205282731	205282895	reg1001264.p1	11.549	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-46179	+	AK293734 NM_001242925	-84755	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-85730	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	8030	-	BC036076 TSC_hg19_v1_chr1_-_205313311	30497	-	AK299227 AK001610 NM_018203 AK096590	43227	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.947058	0.0	denovo_WM_7:-10:0.402	denovo_WM_7:-11:0.516
chr14	71180876	71180995	reg1001137.p2	11.539	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-72326	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-113558	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-113575	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	94874	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	193198	+	TSC_hg19_v1_chr14_+_71374441 BC140784	193516	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	0.99983	0.988529	CTCF.p2:-17:0.989	denovo_WM_7:21:0.419	denovo_WM_7:22:0.419
chr7	76959887	76960023	reg1000675.p2	11.535	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-130819	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-208009	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-703408	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	85763	-	TSC_hg19_v1_chr7_+_77166392 BC050008	206423	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	206851	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.993397	0.0	
chr14	57046067	57046215	reg1001213.p1	11.531	+	TSC_hg19_v1_chr14_+_56585163 AF302502	-460967	+	TSC_hg19_v1_chr14_+_56585131 BC009476 NM_021255 AK315727	-461147	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	-967392	+	TSC_hg19_v1_chr14_+_57046539 AK056291 NM_017799 BC045556 AK293099 AK295989 AK309920 BC008949 BC023579 BC121163 BC121164	404	+	NM_172337 AB593056	226222	-	AK314271 BC032579 NM_021728 AB593058	231003	-	AF302502|PELI2|57161|pellino homolog 2 (Drosophila)##BC009476|PELI2|57161|pellino homolog 2 (Drosophila)##NM_021255|PELI2|57161|pellino homolog 2 (Drosophila)##AK315727|PELI2|57161|pellino homolog 2 (Drosophila)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)##AK056291|C14orf101|54916|chromosome 14 open reading frame 101##NM_017799|C14orf101|54916|chromosome 14 open reading frame 101##BC045556|C14orf101|54916|chromosome 14 open reading frame 101##AK293099|C14orf101|54916|chromosome 14 open reading frame 101##AK295989|C14orf101|54916|chromosome 14 open reading frame 101##AK309920|C14orf101|54916|chromosome 14 open reading frame 101##BC008949|C14orf101|54916|chromosome 14 open reading frame 101##BC023579|C14orf101|54916|chromosome 14 open reading frame 101##BC121163|C14orf101|54916|chromosome 14 open reading frame 101##BC121164|C14orf101|54916|chromosome 14 open reading frame 101##NM_172337|OTX2|5015|orthodenticle homeobox 2##AB593056|OTX2|5015|orthodenticle homeobox 2##AK314271|OTX2|5015|orthodenticle homeobox 2##BC032579|OTX2|5015|orthodenticle homeobox 2##NM_021728|OTX2|5015|orthodenticle homeobox 2##AB593058|OTX2|5015|orthodenticle homeobox 2	0.999087	0.0	denovo_WM_7:6:0.821
chr5	132087357	132087498	reg1001416.p1	11.529	+	TSC_hg19_v1_chr5_+_132083137 AK131553 NM_001039780 BC132837 BC136836 BC144416 BC144417	-4283	+	TSC_hg19_v1_chr5_-_132073239 AB209780 BC039592 AK295089 BC020890 AK313359 BC032599 BC045542 NM_007054	-14210	-	NM_000589 NM_172348	-78055	+	TSC_hg19_v1_chr5_-_132112954 BC140759 BC171779 AK057797 AF179995 AF440761 AF440762 D86957 NM_001098811 NM_001098812 NM_015146	25577	-	AF440763 NM_001098813 TSC_hg19_v1_chr5_-_132113705	26160	-	TSC_hg19_v1_chr5_+_132149022 NM_175873	61600	+	AK131553|CCNI2|645121|cyclin I family, member 2##NM_001039780|CCNI2|645121|cyclin I family, member 2##BC132837|CCNI2|645121|cyclin I family, member 2##BC136836|CCNI2|645121|cyclin I family, member 2##BC144416|CCNI2|645121|cyclin I family, member 2##BC144417|CCNI2|645121|cyclin I family, member 2##AB209780|KIF3A|11127|kinesin family member 3A##BC039592|KIF3A|11127|kinesin family member 3A##AK295089|KIF3A|11127|kinesin family member 3A##BC020890|KIF3A|11127|kinesin family member 3A##AK313359|KIF3A|11127|kinesin family member 3A##BC032599|KIF3A|11127|kinesin family member 3A##BC045542|KIF3A|11127|kinesin family member 3A##NM_007054|KIF3A|11127|kinesin family member 3A##NM_000589|IL4|3565|interleukin 4##NM_172348|IL4|3565|interleukin 4##BC140759|SEPT8|23176|septin 8##BC171779|SEPT8|23176|septin 8##AK057797|SEPT8|23176|septin 8##AF179995|SEPT8|23176|septin 8##AF440761|SEPT8|23176|septin 8##AF440762|SEPT8|23176|septin 8##D86957|SEPT8|23176|septin 8##NM_001098811|SEPT8|23176|septin 8##NM_001098812|SEPT8|23176|septin 8##NM_015146|SEPT8|23176|septin 8##AF440763|SEPT8|23176|septin 8##NM_001098813|SEPT8|23176|septin 8##NM_175873|ANKRD43|134548|ankyrin repeat domain 43	0.995672	0.0	denovo_WM_7:23:0.983
chr11	68041115	68041234	reg1000084.p1	11.526	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-1716	-	TSC_hg19_v1_chr11_-_68039418 AF264781	-1788	-	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	-60195	-	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	38915	+	AF088027 TSC_hg19_v1_chr11_+_68115450	74262	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	187035	+	NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3	1.999025	0.0	denovo_WM_7:56:0.879
chr5	64920725	64920868	reg1000165.p2	11.523	+	NM_001093755 NM_001093756 NM_001243737 NM_024941	-239	+	TSC_hg19_v1_chr5_-_64920151 NM_001656 NM_033227 NM_033228	-629	-	AB384982 CU692664 DQ893646 DQ895584 TSC_hg19_v1_chr5_-_64920148 AF230397 AF230398 AF230399 L04510 BC022510 AK292814	-672	-	BX641157 BC012006 TSC_hg19_v1_chr5_+_64920864 AK023673 BC142994	54	+	TSC_hg19_v1_chr5_-_65017944 AK096321 BC012044 AF368281 NM_019072	97126	-	TSC_hg19_v1_chr5_+_65018049 NM_020726 AK096416 AK292803 AJ300837 BC001644 BC004985 AB463138 CU674806 AB033052	97300	+	NM_001093755|C5orf44|80006|chromosome 5 open reading frame 44##NM_001093756|C5orf44|80006|chromosome 5 open reading frame 44##NM_001243737|C5orf44|80006|chromosome 5 open reading frame 44##NM_024941|C5orf44|80006|chromosome 5 open reading frame 44##NM_001656|TRIM23|373|tripartite motif containing 23##NM_033227|TRIM23|373|tripartite motif containing 23##NM_033228|TRIM23|373|tripartite motif containing 23##DQ893646|TRIM23|373|tripartite motif containing 23##DQ895584|TRIM23|373|tripartite motif containing 23##AF230397|TRIM23|373|tripartite motif containing 23##AF230398|TRIM23|373|tripartite motif containing 23##AF230399|TRIM23|373|tripartite motif containing 23##L04510|TRIM23|373|tripartite motif containing 23##BC022510|TRIM23|373|tripartite motif containing 23##AK292814|TRIM23|373|tripartite motif containing 23##BX641157|C5orf44|80006|chromosome 5 open reading frame 44##BC012006|C5orf44|80006|chromosome 5 open reading frame 44##AK023673|C5orf44|80006|chromosome 5 open reading frame 44##BC142994|C5orf44|80006|chromosome 5 open reading frame 44##AK096321|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##BC012044|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##AF368281|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##NM_019072|SGTB|54557|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta##NM_020726|NLN|57486|neurolysin (metallopeptidase M3 family)##AK096416|NLN|57486|neurolysin (metallopeptidase M3 family)##AK292803|NLN|57486|neurolysin (metallopeptidase M3 family)##AJ300837|NLN|57486|neurolysin (metallopeptidase M3 family)##BC001644|NLN|57486|neurolysin (metallopeptidase M3 family)##BC004985|NLN|57486|neurolysin (metallopeptidase M3 family)##AB463138|NLN|57486|neurolysin (metallopeptidase M3 family)##AB033052|NLN|57486|neurolysin (metallopeptidase M3 family)	0.0	0.0	
chr6_cox_hap2	3307428	3307546	reg1001065.p1	11.520	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.01777	0.801063	CTCF.p2:5:0.801
chr14	77561113	77561248	reg1001572.p1	11.510	+	AK124327 TSC_hg19_v1_chr14_-_77542533	-18647	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-66120	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-66496	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	3465	+	BC117676 TSC_hg19_v1_chr14_-_77608072	46835	-	AK294840 TSC_hg19_v1_chr14_-_77608135 AK095612 NM_174976	46955	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK294840|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK095612|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_174976|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.845081	0.778283	denovo_WM_7:-22:0.316	denovo_WM_7:-23:0.489	CTCF.p2:30:0.778
chr17	8150514	8150663	reg1001401.p1	11.505	+	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	-36705	-	TSC_hg19_v1_chr17_-_8093499 NM_017622	-57061	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	-57184	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	774	-	TSC_hg19_v1_chr17_-_8151373 NM_025099	804	-	TSC_hg19_v1_chr17_+_8152624 AK292804 NM_012393 AK295895 AK292402 AB002359 BC146768 BC167158	2029	+	BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##NM_025099|CTC1|80169|CTS telomere maintenance complex component 1##AK292804|PFAS|5198|phosphoribosylformylglycinamidine synthase##NM_012393|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK295895|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK292402|PFAS|5198|phosphoribosylformylglycinamidine synthase##AB002359|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC146768|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC167158|PFAS|5198|phosphoribosylformylglycinamidine synthase	0.999675	0.0	
chr2	202870006	202870178	reg1001033.p1	11.505	+	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	-198800	+	NM_001135745 NM_020919	-224198	-	TSC_hg19_v1_chr2_-_202645657 BC071576 AB053305 AB053306 AF391100 AK023024 BC029174 AK291029	-224427	-	AB017365 NM_003507 AB010881 BC015915 CU677505	29247	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	233176	-	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	260364	+	AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##NM_001135745|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##NM_020919|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC071576|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053305|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053306|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AF391100|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK023024|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC029174|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK291029|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)	0.99693	0.0	
chr8	128196897	128197065	reg1001347.p1	11.505	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-626257	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-626426	-	TSC_hg19_v1_chr8_-_126963395 BX648371	-1233568	-	DQ486513 NM_001159542	230875	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	551344	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	551509	+	NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	1.04793	0.0	denovo_WM_7:10:0.916
chr8	52814865	52815013	reg1001254.p1	11.500	+	AK299452 TSC_hg19_v1_chr8_+_52812239	-2716	+	TSC_hg19_v1_chr8_-_52811724 NM_052937	-3212	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	-3337	-	BC026316 AB011107 AK311188 BC031075 NM_014682 BC025662	507381	-	BC130641 BC130643 BC144534 AY358213 NM_207413	663054	-	AK291699 D86958 TSC_hg19_v1_chr8_-_53626990	812047	-	NM_052937|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AB011107|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##AK311188|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##BC031075|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##NM_014682|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##BC130641|FAM150A|389658|family with sequence similarity 150, member A##BC130643|FAM150A|389658|family with sequence similarity 150, member A##BC144534|FAM150A|389658|family with sequence similarity 150, member A##AY358213|FAM150A|389658|family with sequence similarity 150, member A##NM_207413|FAM150A|389658|family with sequence similarity 150, member A##AK291699|RB1CC1|9821|RB1-inducible coiled-coil 1##D86958|RB1CC1|9821|RB1-inducible coiled-coil 1	0.979737	0.0	denovo_WM_7:26:0.356	denovo_WM_7:27:0.338
chr20	49410194	49410339	reg1001281.p2	11.498	+	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	-62197	+	TSC_hg19_v1_chr20_-_49308074 AK124347	-102189	-	AK056792 NM_080829	-156841	-	AF361220 NM_001010974 NM_017843 NM_198799 TSC_hg19_v1_chr20_+_49411542 AK000502 BC038381 BC047337 AJ511266 BC056883	1252	+	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	137457	-	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	164797	-	BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##AF361220|BCAS4|55653|breast carcinoma amplified sequence 4##NM_001010974|BCAS4|55653|breast carcinoma amplified sequence 4##NM_017843|BCAS4|55653|breast carcinoma amplified sequence 4##NM_198799|BCAS4|55653|breast carcinoma amplified sequence 4##AK000502|BCAS4|55653|breast carcinoma amplified sequence 4##BC038381|BCAS4|55653|breast carcinoma amplified sequence 4##BC047337|BCAS4|55653|breast carcinoma amplified sequence 4##AJ511266|BCAS4|55653|breast carcinoma amplified sequence 4##BC056883|BCAS4|55653|breast carcinoma amplified sequence 4##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit	1.995407	0.035296	denovo_WM_7:-61:0.850
chr12	121739113	121739293	reg1000198.p2	11.495	+	AF287630 AF287631 NM_006549 NM_153499 NM_153500 NM_172214 NM_172215 NM_172216	-3093	-	TSC_hg19_v1_chr12_-_121735623 AK292072	-3608	-	TSC_hg19_v1_chr12_-_121734549 NM_172226	-4578	-	BC034243 TSC_hg19_v1_chr12_-_121785683	46464	-	TSC_hg19_v1_chr12_-_121790158 AF191339 CU674542 CU675341	50949	-	TSC_hg19_v1_chr12_-_121790212 BC001081 BC001950 BC006301 AK315451	50986	-	AF287630|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF287631|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_006549|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153499|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153500|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172214|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172215|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172216|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AK292072|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172226|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##BC034243|ANAPC5|51433|anaphase promoting complex subunit 5##AF191339|ANAPC5|51433|anaphase promoting complex subunit 5##BC001081|ANAPC5|51433|anaphase promoting complex subunit 5##BC001950|ANAPC5|51433|anaphase promoting complex subunit 5##BC006301|ANAPC5|51433|anaphase promoting complex subunit 5##AK315451|ANAPC5|51433|anaphase promoting complex subunit 5	3.982493	0.0	denovo_WM_7:-27:0.815	denovo_WM_7:32:0.237	denovo_WM_7:33:0.237	denovo_WM_7:34:0.237	denovo_WM_7:35:0.237	denovo_WM_7:-87:0.310	denovo_WM_7:-88:0.310	denovo_WM_7:-89:0.310	denovo_WM_7:95:0.449	denovo_WM_7:96:0.449
chr17	4278483	4278628	reg1001160.p1	11.494	+	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	-8647	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	-8844	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-111404	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	58687	+	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	123681	+	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	180119	-	AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a	0.919226	0.0	denovo_WM_7:16:0.584	denovo_WM_7:17:0.247
chr3	185080805	185080958	reg1001283.p1	11.489	+	AK302951 TSC_hg19_v1_chr3_+_185046682 BC031677	-34190	+	TSC_hg19_v1_chr3_+_185000783 NM_001242314 NM_001242317 AK297646 BC036593 AK312714 BC015996	-80132	+	BC038948 BC110460 L07077 AK301521 TSC_hg19_v1_chr3_-_184971838 AK223460 AK291798 BC011030 BC030982 NM_001166415 NM_001966	-109031	-	BC026249 NM_004721 AK296961 AB001872 BC111726	51	+	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	135818	-	CU687970 TSC_hg19_v1_chr3_-_185270374 AK298380 AY036912 AY093498 EF186228 EF186229 BC064941 AK122651 NM_139248	189447	-	AK302951|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC031677|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_001242314|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_001242317|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK297646|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC036593|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK312714|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC015996|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC038948|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC110460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##L07077|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK301521|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK223460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK291798|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC011030|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC030982|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001166415|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001966|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A##AK298380|LIPH|200879|lipase, member H##AY036912|LIPH|200879|lipase, member H##AY093498|LIPH|200879|lipase, member H##EF186228|LIPH|200879|lipase, member H##EF186229|LIPH|200879|lipase, member H##BC064941|LIPH|200879|lipase, member H##AK122651|LIPH|200879|lipase, member H##NM_139248|LIPH|200879|lipase, member H	0.359448	0.0	denovo_WM_7:36:0.232
chr4	88954566	88954688	reg1001477.p1	11.482	+	TSC_hg19_v1_chr4_+_88928803 BC112261 BC112263 NM_000297 U50928	-25819	+	AY956318 X13694 TSC_hg19_v1_chr4_+_88896900	-57714	+	TSC_hg19_v1_chr4_+_88896868 AK290104 M83248 AK315461 AF052124	-57748	+	BC021281 NM_004827 AF151530	125410	-	TSC_hg19_v1_chr4_-_89205714 AL834271 AK314417 AK054678 AY157615 AY994097 AF351614 BC020850 BC037552	251100	-	AY435431 NM_152542 TSC_hg19_v1_chr4_-_89205908 AL834167	251276	-	BC112261|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##BC112263|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##NM_000297|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##U50928|PKD2|5311|polycystic kidney disease 2 (autosomal dominant)##AY956318|SPP1|6696|secreted phosphoprotein 1##X13694|SPP1|6696|secreted phosphoprotein 1##AK290104|SPP1|6696|secreted phosphoprotein 1##M83248|SPP1|6696|secreted phosphoprotein 1##AK315461|SPP1|6696|secreted phosphoprotein 1##AF052124|SPP1|6696|secreted phosphoprotein 1##BC021281|ABCG2|9429|ATP-binding cassette, sub-family G (WHITE), member 2##NM_004827|ABCG2|9429|ATP-binding cassette, sub-family G (WHITE), member 2##AL834271|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AK314417|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AK054678|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY157615|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY994097|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AF351614|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC020850|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC037552|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY435431|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##NM_152542|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AL834167|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K	0.998861	0.979941	CTCF.p2:24:0.980	denovo_WM_7:-38:0.314	denovo_WM_7:-39:0.314	denovo_WM_7:-40:0.314
chr6	159466286	159466466	reg1000180.p2	11.472	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-275	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-45155	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-45557	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	124054	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	647874	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	647986	-	BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial	0.0	0.0	
chr1	28500095	28500248	reg1001411.p3	11.471	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-85047	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-213653	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-238610	+	NM_000952 NM_001164723	3283	-	S52624 AK292053 NM_001164721 NM_001164722	20241	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	59360	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.998301	0.0	denovo_WM_7:0:0.342	denovo_WM_7:-1:0.587
chr17	27046730	27046881	reg1000924.p1	11.470	+	AF327350 AK297850 AK027312 AJ277106 AK304633 BC066904 NM_001142624 NM_001142625 NM_001144943	-1577	-	TSC_hg19_v1_chr17_-_27044728 BC016841 AK074689 NM_001144942 NM_031934	-1988	-	BC029574 NM_152465	-7934	-	TSC_hg19_v1_chr17_+_27047009 NM_000984 U43701 AK130965 AK312123 BC058041 U37230 BC014459 U02032	203	+	EU831756 EU831834 TSC_hg19_v1_chr17_-_27053250 BC014072 NM_138463	6383	-	NM_001160407	7143	-	AF327350|RAB34|83871|RAB34, member RAS oncogene family##AK297850|RAB34|83871|RAB34, member RAS oncogene family##AK027312|RAB34|83871|RAB34, member RAS oncogene family##AJ277106|RAB34|83871|RAB34, member RAS oncogene family##AK304633|RAB34|83871|RAB34, member RAS oncogene family##BC066904|RAB34|83871|RAB34, member RAS oncogene family##NM_001142624|RAB34|83871|RAB34, member RAS oncogene family##NM_001142625|RAB34|83871|RAB34, member RAS oncogene family##NM_001144943|RAB34|83871|RAB34, member RAS oncogene family##BC016841|RAB34|83871|RAB34, member RAS oncogene family##AK074689|RAB34|83871|RAB34, member RAS oncogene family##NM_001144942|RAB34|83871|RAB34, member RAS oncogene family##NM_031934|RAB34|83871|RAB34, member RAS oncogene family##BC029574|PROCA1|147011|protein interacting with cyclin A1##NM_152465|PROCA1|147011|protein interacting with cyclin A1##NM_000984|RPL23A|6147|ribosomal protein L23a##U43701|RPL23A|6147|ribosomal protein L23a##AK130965|RPL23A|6147|ribosomal protein L23a##AK312123|RPL23A|6147|ribosomal protein L23a##BC058041|RPL23A|6147|ribosomal protein L23a##U37230|RPL23A|6147|ribosomal protein L23a##BC014459|RPL23A|6147|ribosomal protein L23a##U02032|RPL23A|6147|ribosomal protein L23a##EU831756|TLCD1|116238|TLC domain containing 1##EU831834|TLCD1|116238|TLC domain containing 1##BC014072|TLCD1|116238|TLC domain containing 1##NM_138463|TLCD1|116238|TLC domain containing 1##NM_001160407|TLCD1|116238|TLC domain containing 1	1.339079	0.0	denovo_WM_7:-15:0.660	denovo_WM_7:-16:0.253
chr3	32440660	32440784	reg1001078.p1	11.469	+	TSC_hg19_v1_chr3_+_32433370 BC010116 AY174113 DQ132881 AK308878	-7319	+	TSC_hg19_v1_chr3_+_32433162 AF479263 NM_138410 NM_181472 AL832450	-7553	+	TSC_hg19_v1_chr3_+_32280215 BC041390	-160503	+	CR457231 TSC_hg19_v1_chr3_-_32544290	103550	-	TSC_hg19_v1_chr3_-_32544335 AK000403	103611	-	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	103658	-	BC010116|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AY174113|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##DQ132881|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AK308878|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AF479263|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_138410|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_181472|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AL832450|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##BC041390|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6	0.991071	0.653236	CTCF.p2:0:0.653	denovo_WM_7:41:0.944
chr12	8828295	8828470	reg1001534.p1	11.467	+	AK124368 TSC_hg19_v1_chr12_-_8815486	-12900	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	-12981	-	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	-13086	-	TSC_hg19_v1_chr12_+_8850570 AK302847 NM_020734 BC006368	22222	+	NM_144670 AK122624 AK290355 AL832139 BX648231	146800	+	TSC_hg19_v1_chr12_+_9067153 AB209063 AK293893 NM_004426 BC073964 U89277 BC157850	238887	+	AK124368|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##AK302847|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_020734|RIMKLB|57494|ribosomal modification protein rimK-like family member B##BC006368|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_144670|A2ML1|144568|alpha-2-macroglobulin-like 1##AK122624|A2ML1|144568|alpha-2-macroglobulin-like 1##AK290355|A2ML1|144568|alpha-2-macroglobulin-like 1##AL832139|A2ML1|144568|alpha-2-macroglobulin-like 1##BX648231|A2ML1|144568|alpha-2-macroglobulin-like 1##AB209063|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##AK293893|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##NM_004426|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC073964|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##U89277|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC157850|PHC1|1911|polyhomeotic homolog 1 (Drosophila)	1.02904	0.0	denovo_WM_7:16:0.681
chr11	34022638	34022760	reg1001315.p1	11.465	+	NM_005574 X61118	-108864	-	TSC_hg19_v1_chr11_-_33891485 NM_001142315	-131203	-	BC042426 TSC_hg19_v1_chr11_-_33891402 BC034041 NM_001142316	-131308	-	TSC_hg19_v1_chr11_+_34073238 BC001731 NM_005898 NM_203364	50514	+	TSC_hg19_v1_chr11_+_34073889 AK299720	51205	+	TSC_hg19_v1_chr11_+_34073950 Z48042	51238	+	NM_005574|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##X61118|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##NM_001142315|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC042426|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC034041|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##NM_001142316|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC001731|CAPRIN1|4076|cell cycle associated protein 1##NM_005898|CAPRIN1|4076|cell cycle associated protein 1##NM_203364|CAPRIN1|4076|cell cycle associated protein 1##AK299720|CAPRIN1|4076|cell cycle associated protein 1##Z48042|CAPRIN1|4076|cell cycle associated protein 1	0.99674	0.0	denovo_WM_7:-35:0.449	denovo_WM_7:-36:0.449
chr19	7243147	7243274	reg1000255.p3	11.465	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-143659	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-173495	+	AK315405 NM_001044387 NM_001044388 NM_024341	-173748	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	50750	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	216797	+	TSC_hg19_v1_chr19_+_7460061 AB011093	216867	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.968564	0.0	denovo_WM_7:41:0.703	denovo_WM_7:56:0.736
chrX	1641125	1641305	reg1000448.p2	11.465	+	AK301844 NM_001173473	-68564	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-69414	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-130246	-	BC043610 GQ280263 NM_178129 AK126147	14823	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	69314	+	NM_004043 U11090	73132	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.148123	0.0	
chrY	1591125	1591305	reg1000449.p2	11.463	+	AK301844 NM_001173473	-68564	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-69414	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-130246	-	BC043610 GQ280263 NM_178129 AK126147	14823	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	69314	+	NM_004043 U11090	73132	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.148123	0.0	
chr1	220164506	220164626	reg1001126.p1	11.461	+	TSC_hg19_v1_chr1_-_220101974 AY212919 AK090806 AX746624 NM_018713	-62601	-	AB464233 TSC_hg19_v1_chr1_-_220101784	-62775	-	BC036078 TSC_hg19_v1_chr1_-_220101540	-63037	-	TSC_hg19_v1_chr1_-_220219802 BC136465 BC105983 BC015494 BC034797	55228	-	TSC_hg19_v1_chr1_-_220219848 BC058921 CR933648	55276	-	TSC_hg19_v1_chr1_-_220219873 AK296755 BC067841	55297	-	AY212919|SLC30A10|55532|solute carrier family 30, member 10##AK090806|SLC30A10|55532|solute carrier family 30, member 10##NM_018713|SLC30A10|55532|solute carrier family 30, member 10##BC036078|SLC30A10|55532|solute carrier family 30, member 10##BC136465|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC105983|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC015494|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC034797|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC058921|EPRS|2058|glutamyl-prolyl-tRNA synthetase##CR933648|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AK296755|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC067841|EPRS|2058|glutamyl-prolyl-tRNA synthetase	0.998221	0.814729	CTCF.p2:-32:0.815
chr6	5260975	5261096	reg1000692.p1	11.459	+	AF088060 EU831799 EU831876 TSC_hg19_v1_chr6_-_5260976 AK309661 AK291158 BC067762 AF170070 AF285118 BC009552	-38	-	NM_001145115	-175316	+	TSC_hg19_v1_chr6_+_5030223 BC042032 BC133670	-230802	+	TSC_hg19_v1_chr6_-_5261177 NM_001164840 NM_001164841 NM_020408	131	-	TSC_hg19_v1_chr6_+_5261294 AK312454	227	+	TSC_hg19_v1_chr6_+_5261758 NM_006567 AK223423 BC020239 BC021112 BC014273	655	+	AF088060|LYRM4|57128|LYR motif containing 4##EU831799|LYRM4|57128|LYR motif containing 4##EU831876|LYRM4|57128|LYR motif containing 4##AK309661|LYRM4|57128|LYR motif containing 4##AK291158|LYRM4|57128|LYR motif containing 4##BC067762|LYRM4|57128|LYR motif containing 4##AF170070|LYRM4|57128|LYR motif containing 4##AF285118|LYRM4|57128|LYR motif containing 4##BC009552|LYRM4|57128|LYR motif containing 4##NM_001145115|PPP1R3G|648791|protein phosphatase 1, regulatory subunit 3G##BC042032|LOC100129461|100129461|uncharacterized LOC100129461##BC133670|LOC100129461|100129461|uncharacterized LOC100129461##NM_001164840|LYRM4|57128|LYR motif containing 4##NM_001164841|LYRM4|57128|LYR motif containing 4##NM_020408|LYRM4|57128|LYR motif containing 4##AK312454|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##NM_006567|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK223423|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC020239|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC021112|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial	0.943498	0.0	denovo_WM_7:-53:0.469	denovo_WM_7:-54:0.362
chr3	107529684	107529814	reg1001365.p3	11.457	+	NM_001142568 NM_020235 AF283775 AF454941 TSC_hg19_v1_chr3_+_107241834 AF161457 AK314434 AK057010 AK291757 AF276949 BC131718	-287900	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	-433439	+	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	-570157	+	AB590342 BT006907 DQ890756 DQ891811 DQ893920 TSC_hg19_v1_chr3_-_107809906 BC010016 BC012884 X69398 BC037306 AK289813 Z25521 NM_001777 NM_198793	280124	-	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	411543	-	AK315109 AK296644 TSC_hg19_v1_chr3_+_108015400 AK000692	485652	+	NM_001142568|BBX|56987|bobby sox homolog (Drosophila)##NM_020235|BBX|56987|bobby sox homolog (Drosophila)##AF283775|BBX|56987|bobby sox homolog (Drosophila)##AF454941|BBX|56987|bobby sox homolog (Drosophila)##AF161457|BBX|56987|bobby sox homolog (Drosophila)##AK314434|BBX|56987|bobby sox homolog (Drosophila)##AK057010|BBX|56987|bobby sox homolog (Drosophila)##AK291757|BBX|56987|bobby sox homolog (Drosophila)##AF276949|BBX|56987|bobby sox homolog (Drosophila)##BC131718|BBX|56987|bobby sox homolog (Drosophila)##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##BT006907|CD47|961|CD47 molecule##DQ890756|CD47|961|CD47 molecule##DQ891811|CD47|961|CD47 molecule##DQ893920|CD47|961|CD47 molecule##BC010016|CD47|961|CD47 molecule##BC012884|CD47|961|CD47 molecule##X69398|CD47|961|CD47 molecule##BC037306|CD47|961|CD47 molecule##AK289813|CD47|961|CD47 molecule##Z25521|CD47|961|CD47 molecule##NM_001777|CD47|961|CD47 molecule##NM_198793|CD47|961|CD47 molecule##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK315109|HHLA2|11148|HERV-H LTR-associating 2##AK296644|HHLA2|11148|HERV-H LTR-associating 2##AK000692|HHLA2|11148|HERV-H LTR-associating 2	0.947866	0.0	denovo_WM_7:18:0.752
chr13	48878829	48878964	reg1001336.p1	11.455	+	TSC_hg19_v1_chr13_+_48878045 M33647 AB384726 CU691646 DQ891564 DQ894752	-850	+	TSC_hg19_v1_chr13_+_48877982 AB208788	-930	+	TSC_hg19_v1_chr13_+_48877902 L41870 M15400 M19701 M28419	-975	+	AK223389 BC070295 BC054346 TSC_hg19_v1_chr13_-_48987235 BC040850	108234	-	BX537445 AK123059 BX537392 BX537438 BX647109 TSC_hg19_v1_chr13_-_48987250	108359	-	NM_001162498	108756	-	M33647|RB1|5925|retinoblastoma 1##DQ891564|RB1|5925|retinoblastoma 1##DQ894752|RB1|5925|retinoblastoma 1##AB208788|RB1|5925|retinoblastoma 1##L41870|RB1|5925|retinoblastoma 1##M15400|RB1|5925|retinoblastoma 1##M19701|RB1|5925|retinoblastoma 1##M28419|RB1|5925|retinoblastoma 1##AK223389|LPAR6|10161|lysophosphatidic acid receptor 6##BC070295|LPAR6|10161|lysophosphatidic acid receptor 6##BC054346|LPAR6|10161|lysophosphatidic acid receptor 6##BC040850|LPAR6|10161|lysophosphatidic acid receptor 6##BX537445|LPAR6|10161|lysophosphatidic acid receptor 6##AK123059|LPAR6|10161|lysophosphatidic acid receptor 6##BX537392|LPAR6|10161|lysophosphatidic acid receptor 6##BX537438|LPAR6|10161|lysophosphatidic acid receptor 6##BX647109|LPAR6|10161|lysophosphatidic acid receptor 6##NM_001162498|LPAR6|10161|lysophosphatidic acid receptor 6	0.065998	0.0	
chr13	76056768	76056899	reg1001579.p1	11.451	+	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	-495	-	CR749622 TSC_hg19_v1_chr13_-_75901948	-154911	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1348437	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	55145	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	67091	+	AF330045 NM_005358	137736	+	AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##AF330045|LMO7|4008|LIM domain 7##NM_005358|LMO7|4008|LIM domain 7	0.0	0.218247	CTCF.p2:-19:0.218
chr3	66327279	66327439	reg1001644.p1	11.444	+	NM_001164796	-56192	+	AK092495 AX747571 NM_173471	-208075	+	BC062367 NM_001033057 NM_004742 NM_015520 TSC_hg19_v1_chr3_-_66024518	-302846	-	TSC_hg19_v1_chr3_+_66444897 AB075504	117600	+	AF381545 BC140907 NM_015541 AY730707	223493	-	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	224105	-	NM_001164796|SLC25A26|115286|solute carrier family 25, member 26##AK092495|SLC25A26|115286|solute carrier family 25, member 26##AX747571|SLC25A26|115286|solute carrier family 25, member 26##NM_173471|SLC25A26|115286|solute carrier family 25, member 26##BC062367|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_001033057|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_004742|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_015520|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1	0.992256	0.0	denovo_WM_7:30:0.789
chr9	22239077	22239214	reg1001008.p1	11.440	+	TSC_hg19_v1_chr9_+_22113543 BC038540	-125536	+	AF004819 U17075 L36844 BC014469 TSC_hg19_v1_chr9_-_22009305 NM_004936 NM_078487	-229855	-	TSC_hg19_v1_chr9_-_21994420 AB464504 S78535 NM_058195 U38945	-244694	-	TSC_hg19_v1_chr9_+_22446846 AK096011 NM_022160 BC130435 BC130437	207692	+	AB464510 TSC_hg19_v1_chr9_+_22447162	207968	+	AJ290954 TSC_hg19_v1_chr9_+_22447458 AK130018	208304	+	BC038540|CDKN2B-AS|100048912|CDKN2B antisense RNA (non-protein coding)##AF004819|CDKN2B|1030|cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)##U17075|CDKN2B|1030|cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)##L36844|CDKN2B|1030|cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)##BC014469|CDKN2B|1030|cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)##NM_004936|CDKN2B|1030|cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)##NM_078487|CDKN2B|1030|cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)##S78535|CDKN2A|1029|cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)##NM_058195|CDKN2A|1029|cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)##U38945|CDKN2A|1029|cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)##AK096011|DMRTA1|63951|DMRT-like family A1##NM_022160|DMRTA1|63951|DMRT-like family A1##BC130435|DMRTA1|63951|DMRT-like family A1##BC130437|DMRTA1|63951|DMRT-like family A1##AJ290954|DMRTA1|63951|DMRT-like family A1##AK130018|DMRTA1|63951|DMRT-like family A1	0.997253	0.0	
chr5	88042202	88042364	reg1001371.p1	11.438	+	TSC_hg19_v1_chr5_-_87980643 AK125167	-61576	-	AK311230 TSC_hg19_v1_chr5_-_87969144 AK309800 AK308694 BC036480	-73138	-	BC047059 TSC_hg19_v1_chr5_+_87564842	-477434	+	AB384888 EU446634 EU832832 FM163484 FM180475 GQ129219 GQ129221 GQ129392 GQ129393 NM_001193348 NM_001193349	77390	-	TSC_hg19_v1_chr5_-_88179002 AK312472 L08895 AK307883 BC026341	136723	-	TSC_hg19_v1_chr5_-_88179279 NM_001193350 NM_002397	137002	-	AK311230|LINC00461|645323|long intergenic non-protein coding RNA 461##AK309800|LINC00461|645323|long intergenic non-protein coding RNA 461##AK308694|LINC00461|645323|long intergenic non-protein coding RNA 461##BC036480|LINC00461|645323|long intergenic non-protein coding RNA 461##BC047059|LOC100505894|100505894|uncharacterized LOC100505894##EU446634|MEF2C|4208|myocyte enhancer factor 2C##EU832832|MEF2C|4208|myocyte enhancer factor 2C##FM163484|MEF2C|4208|myocyte enhancer factor 2C##FM180475|MEF2C|4208|myocyte enhancer factor 2C##GQ129219|MEF2C|4208|myocyte enhancer factor 2C##GQ129221|MEF2C|4208|myocyte enhancer factor 2C##GQ129392|MEF2C|4208|myocyte enhancer factor 2C##GQ129393|MEF2C|4208|myocyte enhancer factor 2C##NM_001193348|MEF2C|4208|myocyte enhancer factor 2C##NM_001193349|MEF2C|4208|myocyte enhancer factor 2C##AK312472|MEF2C|4208|myocyte enhancer factor 2C##L08895|MEF2C|4208|myocyte enhancer factor 2C##AK307883|MEF2C|4208|myocyte enhancer factor 2C##BC026341|MEF2C|4208|myocyte enhancer factor 2C##NM_001193350|MEF2C|4208|myocyte enhancer factor 2C##NM_002397|MEF2C|4208|myocyte enhancer factor 2C	0.999147	0.0	denovo_WM_7:-16:0.739
chr4	119512680	119512834	reg1001025.p1	11.436	+	TSC_hg19_v1_chr4_-_119273910 AJ001531 BC007761 NM_003619	-238832	-	TSC_hg19_v1_chr4_+_119199912 BC017993 BC039555	-312840	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	-557182	+	TSC_hg19_v1_chr4_+_119512929 AK024248	177	+	TSC_hg19_v1_chr4_+_119606557 AK055555 AB046847 BC006565 BC007449 NM_020961 AB384254 CU675451	93854	+	TSC_hg19_v1_chr4_-_119757254 AK291765 AB018298 BC035761	244470	-	AJ001531|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##BC007761|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##NM_003619|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##BC017993|SNHG8|100093630|small nucleolar RNA host gene 8 (non-protein coding)##BC039555|SNHG8|100093630|small nucleolar RNA host gene 8 (non-protein coding)##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK024248|LOC729218|729218|uncharacterized LOC729218##AK055555|METTL14|57721|methyltransferase like 14##AB046847|METTL14|57721|methyltransferase like 14##BC006565|METTL14|57721|methyltransferase like 14##BC007449|METTL14|57721|methyltransferase like 14##NM_020961|METTL14|57721|methyltransferase like 14##AK291765|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##AB018298|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##BC035761|SEC24D|9871|SEC24 family, member D (S. cerevisiae)	1.969646	0.0	denovo_WM_7:-5:0.943	denovo_WM_7:9:0.954
chr9	75762684	75762818	reg1001346.p1	11.435	+	NM_000689	-194519	-	AB587538 AF003341 AY390731 BT006921 DQ890669 DQ893850 BC001505 TSC_hg19_v1_chr9_-_75567970 AB209821 AK000118 AK026641 AK302168	-194806	-	AF417578 NM_138691	-626035	+	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	4027	+	TSC_hg19_v1_chr9_+_75766797 BC001275	4052	+	NM_006914 BC051830 Y08639	1349523	+	NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AF003341|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AY390731|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##BT006921|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##DQ890669|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##DQ893850|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##BC001505|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AB209821|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK000118|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK026641|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK302168|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AF417578|TMC1|117531|transmembrane channel-like 1##NM_138691|TMC1|117531|transmembrane channel-like 1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1##BC001275|ANXA1|301|annexin A1##NM_006914|RORB|6096|RAR-related orphan receptor B##BC051830|RORB|6096|RAR-related orphan receptor B##Y08639|RORB|6096|RAR-related orphan receptor B	0.993704	0.0	
chr7	121171147	121171327	reg1001268.p3	11.433	+	TSC_hg19_v1_chr7_-_121036363 AK292731 AK290682 BC068526 NM_001040020 NM_014888	-134823	-	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	-134900	-	AF169963 NM_057168	-202148	+	NM_001206838 NM_001206839 NM_002851 TSC_hg19_v1_chr7_+_121513164	341924	+	TSC_hg19_v1_chr7_+_121513214 U88967	341984	+	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	613052	-	AK292731|FAM3C|10447|family with sequence similarity 3, member C##AK290682|FAM3C|10447|family with sequence similarity 3, member C##BC068526|FAM3C|10447|family with sequence similarity 3, member C##NM_001040020|FAM3C|10447|family with sequence similarity 3, member C##NM_014888|FAM3C|10447|family with sequence similarity 3, member C##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C##AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_001206838|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_001206839|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_002851|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase	0.991515	0.0	denovo_WM_7:-12:0.331	denovo_WM_7:-13:0.331	denovo_WM_7:-14:0.331
chr17	4952674	4952845	reg1001110.p1	11.432	+	AB362534 AK023570 AB362533 BC060810 NM_001104577 NM_017986	-14047	-	TSC_hg19_v1_chr17_+_4901226 NM_006612 AB014606 BC034993 AK307401	-51449	+	AY601906 AY601907 NM_001167985 NM_001167986 NM_001167987 NM_213726	-51855	-	TSC_hg19_v1_chr17_+_4981751 AK055288 NM_153018	28978	+	TSC_hg19_v1_chr17_+_4981774 AK290549 BC142962 BX647638	29026	+	NM_014519 AK316369 TSC_hg19_v1_chr17_-_5026412	73645	-	AB362534|GPR172B|55065|G protein-coupled receptor 172B##AK023570|GPR172B|55065|G protein-coupled receptor 172B##AB362533|GPR172B|55065|G protein-coupled receptor 172B##BC060810|GPR172B|55065|G protein-coupled receptor 172B##NM_001104577|GPR172B|55065|G protein-coupled receptor 172B##NM_017986|GPR172B|55065|G protein-coupled receptor 172B##NM_006612|KIF1C|10749|kinesin family member 1C##AB014606|KIF1C|10749|kinesin family member 1C##BC034993|KIF1C|10749|kinesin family member 1C##AK307401|KIF1C|10749|kinesin family member 1C##AY601906|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AY601907|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167985|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167986|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167987|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_213726|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AK055288|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_153018|ZFP3|124961|zinc finger protein 3 homolog (mouse)##AK290549|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BC142962|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BX647638|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_014519|ZNF232|7775|zinc finger protein 232##AK316369|ZNF232|7775|zinc finger protein 232	1.277499	0.0	denovo_WM_7:6:0.748	denovo_WM_7:21:0.280
chr11	85732461	85732641	reg1001252.p2	11.426	+	AK124113 NM_173556	-166408	+	TSC_hg19_v1_chr11_-_85522185 AB046817 NM_032943 AK296224 AK296740	-210370	-	BC136450 BC144114 BC144115 NM_001162951 NM_001162953	-263508	-	AB451308 BC048259 U45976 BC073961 TSC_hg19_v1_chr11_-_85779975	47347	-	TSC_hg19_v1_chr11_-_85780088 BC064357	47544	-	TSC_hg19_v1_chr11_-_85780127 AB210017 NM_001008660 NM_001206946 NM_007166 AK291414	47573	-	AK124113|CCDC83|220047|coiled-coil domain containing 83##NM_173556|CCDC83|220047|coiled-coil domain containing 83##AB046817|SYTL2|54843|synaptotagmin-like 2##NM_032943|SYTL2|54843|synaptotagmin-like 2##AK296224|SYTL2|54843|synaptotagmin-like 2##AK296740|SYTL2|54843|synaptotagmin-like 2##BC136450|SYTL2|54843|synaptotagmin-like 2##BC144114|SYTL2|54843|synaptotagmin-like 2##BC144115|SYTL2|54843|synaptotagmin-like 2##NM_001162951|SYTL2|54843|synaptotagmin-like 2##NM_001162953|SYTL2|54843|synaptotagmin-like 2##AB451308|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC048259|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##U45976|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC073961|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC064357|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AB210017|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001008660|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206946|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_007166|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AK291414|PICALM|8301|phosphatidylinositol binding clathrin assembly protein	0.996673	0.0	denovo_WM_7:-4:0.647
chr21	37887984	37888089	reg1001373.p2	11.418	+	AF314090 AY355348 NM_001146079 NM_144492	-35649	-	BC012126 NM_012130 AY355349	-49305	-	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	-130346	+	AJ566765 NM_001146078	26861	-	AJ566766 NM_001146077	60830	-	BC052313 BC067104 TSC_hg19_v1_chr21_+_38071448	183404	+	AF314090|CLDN14|23562|claudin 14##AY355348|CLDN14|23562|claudin 14##NM_001146079|CLDN14|23562|claudin 14##NM_144492|CLDN14|23562|claudin 14##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AJ566765|CLDN14|23562|claudin 14##NM_001146078|CLDN14|23562|claudin 14##AJ566766|CLDN14|23562|claudin 14##NM_001146077|CLDN14|23562|claudin 14	1.988949	0.0	denovo_WM_7:-56:0.331	denovo_WM_7:-57:0.331	denovo_WM_7:-58:0.331	denovo_WM_7:58:0.816
chr22	33964717	33964884	reg1001418.p2	11.418	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-510445	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-562074	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-767048	+	AJ007583 AB011181 NM_004737 NM_133642	351570	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1497349	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1688676	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.993825	0.0	
chr10	119412710	119412860	reg1000943.p2	11.408	+	TSC_hg19_v1_chr10_+_119302713 AB463605	-110042	+	AF301598 NM_001165924 NM_004098	-110830	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-110869	-	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	393259	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	393645	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	689039	-	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A	0.992447	0.0	denovo_WM_7:-52:0.778
chr4	52892309	52892436	reg1001622.p1	11.408	+	CR749811 NM_001024611	-8587	-	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	-183086	+	AK025164 NM_025087 BC137387 BC137388	-3904100	+	BT019433 CR456810 DQ893140 DQ896425 EU176433 U29586 TSC_hg19_v1_chr4_-_52904447 AK299765 BC020709 AK289892 U31116 NM_000232	12085	-	TSC_hg19_v1_chr4_+_52917480 AK304386 AK057468 BC025396 NM_145263 AK314799	25161	+	AK302438 NM_001134223	630385	-	CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66##AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BT019433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##CR456810|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ893140|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ896425|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##EU176433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U29586|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK299765|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##BC020709|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK289892|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U31116|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##NM_000232|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK304386|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK057468|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##BC025396|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##NM_145263|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK314799|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK302438|USP46|64854|ubiquitin specific peptidase 46##NM_001134223|USP46|64854|ubiquitin specific peptidase 46	1.211212	0.998205	CTCF.p2:-2:0.998	denovo_WM_7:48:0.205	denovo_WM_7:63:0.274
chrX	13687477	13687625	reg1001316.p1	11.408	+	AK291271 AK315599 NM_152634 AK294465	-16285	+	NM_001167890 NM_015507 AK075214 AK300236 AJ245671 AF193055 AF186084 AK300137 AK315018 AY358333 BC038587 AL117610 CU691592 DQ890938	-99715	+	TSC_hg19_v1_chrX_-_13397507 D28370	-290046	-	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	19690	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	19742	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	65157	-	AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_001167890|EGFL6|25975|EGF-like-domain, multiple 6##NM_015507|EGFL6|25975|EGF-like-domain, multiple 6##AK075214|EGFL6|25975|EGF-like-domain, multiple 6##AK300236|EGFL6|25975|EGF-like-domain, multiple 6##AJ245671|EGFL6|25975|EGF-like-domain, multiple 6##AF193055|EGFL6|25975|EGF-like-domain, multiple 6##AF186084|EGFL6|25975|EGF-like-domain, multiple 6##AK300137|EGFL6|25975|EGF-like-domain, multiple 6##AK315018|EGFL6|25975|EGF-like-domain, multiple 6##AY358333|EGFL6|25975|EGF-like-domain, multiple 6##BC038587|EGFL6|25975|EGF-like-domain, multiple 6##AL117610|EGFL6|25975|EGF-like-domain, multiple 6##DQ890938|EGFL6|25975|EGF-like-domain, multiple 6##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2	0.91574	0.0	denovo_WM_7:0:0.213	denovo_WM_7:1:0.649
chr3	57230859	57231034	reg1001393.p1	11.400	+	AF494208 NM_017563 TSC_hg19_v1_chr3_-_57199413	-31536	-	AF458067 TSC_hg19_v1_chr3_-_57199347	-31613	-	AF433662 AK302493 NM_001128615	-117633	-	NM_003865	3333	-	TSC_hg19_v1_chr3_+_57261766 BC028599 NM_012096	30801	+	AK299008 TSC_hg19_v1_chr3_+_57261776	30830	+	AF494208|IL17RD|54756|interleukin 17 receptor D##NM_017563|IL17RD|54756|interleukin 17 receptor D##AF458067|IL17RD|54756|interleukin 17 receptor D##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_003865|HESX1|8820|HESX homeobox 1##BC028599|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##NM_012096|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AK299008|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	1.994568	0.0	
chr12	31789619	31789791	reg1000367.p2	11.398	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-45787	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-310566	-	TSC_hg19_v1_chr12_-_31479085 AF212220	-310604	-	AK290248 NM_001135864	10388	+	BC039535 NM_173802	22415	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	22909	+	BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20	0.0	0.999885	CTCF.p2:61:1.000
chr11	11193469	11193614	reg1001463.p1	11.396	+	TSC_hg19_v1_chr11_+_10879769 BC014360 BC036635	-313755	+	AK123233 TSC_hg19_v1_chr11_-_10879580 AK315033 BC047754 AF205600 BC017803 BC038508 NM_001143667 NM_021211	-314023	-	TSC_hg19_v1_chr11_+_10830752 AK056207	-362744	+	AK055111 BC037341 TSC_hg19_v1_chr11_-_11643550 BC060864 NM_198516	450037	-	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	669475	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	669950	+	BC014360|LOC729013|729013|uncharacterized LOC729013##BC036635|LOC729013|729013|uncharacterized LOC729013##AK123233|ZBED5|58486|zinc finger, BED-type containing 5##AK315033|ZBED5|58486|zinc finger, BED-type containing 5##BC047754|ZBED5|58486|zinc finger, BED-type containing 5##AF205600|ZBED5|58486|zinc finger, BED-type containing 5##BC017803|ZBED5|58486|zinc finger, BED-type containing 5##BC038508|ZBED5|58486|zinc finger, BED-type containing 5##NM_001143667|ZBED5|58486|zinc finger, BED-type containing 5##NM_021211|ZBED5|58486|zinc finger, BED-type containing 5##AK055111|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC037341|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC060864|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##NM_198516|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47	0.988645	0.0	denovo_WM_7:-15:0.532	denovo_WM_7:-16:0.457
chr17	59828034	59828186	reg1001720.p1	11.395	+	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	-159548	-	AF188703 NM_018488 BC136403 BC144062 AB464284	-294282	+	BC142620 TSC_hg19_v1_chr17_+_59529788	-298324	+	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	112684	-	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	177232	-	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	314517	-	BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##AF188703|TBX4|9496|T-box 4##NM_018488|TBX4|9496|T-box 4##BC136403|TBX4|9496|T-box 4##BC144062|TBX4|9496|T-box 4##BC142620|TBX4|9496|T-box 4##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13	0.998979	0.0	denovo_WM_7:-32:0.518	denovo_WM_7:-33:0.462
chr14	96129185	96129333	reg1001104.p1	11.394	+	TSC_hg19_v1_chr14_+_96001402 DQ083331	-127826	+	AB223038 TSC_hg19_v1_chr14_+_96001383	-127876	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	-127891	+	BC051000 NM_004918 AF137027 AB018563 AF110466 BC041616 AB590931 CR457087	23519	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	51208	-	AK023027 TSC_hg19_v1_chr14_+_96342762	213486	+	DQ083331|GLRX5|51218|glutaredoxin 5##AB223038|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5##BC051000|TCL1B|9623|T-cell leukemia/lymphoma 1B##NM_004918|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF137027|TCL1B|9623|T-cell leukemia/lymphoma 1B##AB018563|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF110466|TCL1B|9623|T-cell leukemia/lymphoma 1B##BC041616|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR457087|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##AK023027|LOC100507043|100507043|uncharacterized LOC100507043	0.999658	0.0	
chr5	95261807	95261947	reg1001367.p1	11.392	+	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	-103357	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	-103477	-	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-194341	+	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	35621	-	TSC_hg19_v1_chr5_-_95297609 BC028412 NM_012081	35808	-	AK308575 NM_001177876	486811	-	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2##BC028412|ELL2|22936|elongation factor, RNA polymerase II, 2##NM_012081|ELL2|22936|elongation factor, RNA polymerase II, 2##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1	0.99405	0.0	denovo_WM_7:8:0.594	denovo_WM_7:9:0.400
chr21	35320061	35320196	reg1000749.p1	11.391	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-32036	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-129458	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-305273	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	125713	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	125801	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	416218	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.95206	0.0	denovo_WM_7:-4:0.361	denovo_WM_7:-7:0.242	denovo_WM_7:-8:0.211
chr1	120784648	120784808	reg1001214.p2	11.389	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-172413	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-172462	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-172522	-	NM_001100910	54276	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	151181	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	151224	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.990221	0.0	denovo_WM_7:-24:0.340	denovo_WM_7:-26:0.584
chr7	5463330	5463461	reg1001726.p1	11.386	+	NM_001080495	-219	-	AY129022 TSC_hg19_v1_chr7_-_5461555	-1854	-	TSC_hg19_v1_chr7_-_5460842 BC140723	-2489	-	CU692902 TSC_hg19_v1_chr7_-_5553380 AK057042 BC006426 BC024256 NM_024963	89956	-	TSC_hg19_v1_chr7_-_5553435 AK130444 AK294949	90032	-	M28424 V00478 TSC_hg19_v1_chr7_-_5567980 HQ154074 DQ407611 EF036500	104617	-	NM_001080495|TNRC18|84629|trinucleotide repeat containing 18##AY129022|TNRC18|84629|trinucleotide repeat containing 18##AK057042|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC006426|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC024256|FBXL18|80028|F-box and leucine-rich repeat protein 18##NM_024963|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK130444|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK294949|FBXL18|80028|F-box and leucine-rich repeat protein 18##M28424|ACTB|60|actin, beta##V00478|ACTB|60|actin, beta##DQ407611|ACTB|60|actin, beta##EF036500|ACTB|60|actin, beta	0.998007	0.0	denovo_WM_7:78:0.298	denovo_WM_7:79:0.298	denovo_WM_7:80:0.298
chr2	62289038	62289203	reg1001003.p1	11.382	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-156291	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-173334	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-173386	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	134146	+	BC047439 AK091902 AX747245 NM_198276	444419	-	AK292545 NM_001142615	611865	+	AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1	0.98326	0.0	denovo_WM_7:7:0.492	denovo_WM_7:8:0.491
chr3	80658974	80659117	reg1001451.p1	11.375	+	NM_002941	-841987	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	-1590458	-	TSC_hg19_v1_chr3_-_78666943 AK025535	-1992060	-	TSC_hg19_v1_chr3_-_81810692 EU176342 L07956	1151652	-	TSC_hg19_v1_chr3_-_81810798 AK312245	1151753	-	TSC_hg19_v1_chr3_-_81810802 AK297939	1151760	-	NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##EU176342|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##L07956|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK312245|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK297939|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1	1.575476	0.0	denovo_WM_7:-17:0.431	denovo_WM_7:-31:0.338	denovo_WM_7:-32:0.377
chr6	74270640	74270798	reg1001196.p1	11.374	+	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-39973	-	TSC_hg19_v1_chr6_-_74230163 AY043301	-40549	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	-41550	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	92911	-	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	93061	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	134846	+	BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule	1.970107	0.0	denovo_WM_7:-26:0.729	denovo_WM_7:26:0.749
chr19	39497177	39497312	reg1001412.p1	11.372	+	BC012385 AF386743 NM_024907	-30910	-	AK057934 NM_148169	-53918	-	TSC_hg19_v1_chr19_+_39421608 NM_021107 NM_033363 Y11681 BC007499 BC001617	-75641	+	CU677033 TSC_hg19_v1_chr19_-_39522905	25655	-	TSC_hg19_v1_chr19_-_39523185 BC030060 AF436061 BC014527 NM_178820	25989	-	AK131245 NM_001004318	77700	+	BC012385|FBXO17|115290|F-box protein 17##AF386743|FBXO17|115290|F-box protein 17##NM_024907|FBXO17|115290|F-box protein 17##AK057934|FBXO17|115290|F-box protein 17##NM_148169|FBXO17|115290|F-box protein 17##NM_021107|MRPS12|6183|mitochondrial ribosomal protein S12##NM_033363|MRPS12|6183|mitochondrial ribosomal protein S12##Y11681|MRPS12|6183|mitochondrial ribosomal protein S12##BC007499|MRPS12|6183|mitochondrial ribosomal protein S12##BC001617|MRPS12|6183|mitochondrial ribosomal protein S12##BC030060|FBXO27|126433|F-box protein 27##AF436061|FBXO27|126433|F-box protein 27##BC014527|FBXO27|126433|F-box protein 27##NM_178820|FBXO27|126433|F-box protein 27##AK131245|PAPL|390928|iron/zinc purple acid phosphatase-like protein##NM_001004318|PAPL|390928|iron/zinc purple acid phosphatase-like protein	1.540209	0.0	denovo_WM_7:-22:0.551	denovo_WM_7:-23:0.208	denovo_WM_7:-37:0.546
chr6	53109911	53110045	reg1001177.p1	11.371	+	BC096288 BC096289 AK309881 NM_003643 D88613	-96375	-	AF176704 NM_012347	-174208	+	TSC_hg19_v1_chr6_+_52930242 AF155114 AL137520 NM_033480	-179657	+	AK125098 TSC_hg19_v1_chr6_-_53213676	103661	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	103743	-	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	103883	-	BC096288|GCM1|8521|glial cells missing homolog 1 (Drosophila)##BC096289|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AK309881|GCM1|8521|glial cells missing homolog 1 (Drosophila)##NM_003643|GCM1|8521|glial cells missing homolog 1 (Drosophila)##D88613|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AF176704|FBXO9|26268|F-box protein 9##NM_012347|FBXO9|26268|F-box protein 9##AL137520|FBXO9|26268|F-box protein 9##NM_033480|FBXO9|26268|F-box protein 9##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5	0.993794	0.0	
chr12	122028326	122028506	reg1000043.p3	11.370	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-9502	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-10157	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-123342	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	36227	+	BC057760 NM_173855	79143	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	122328	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	0.0	0.0	
chr13	31236774	31236910	reg1001256.p1	11.369	+	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	-44879	+	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	-45215	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	-196784	-	AK314143 NM_001204406	50772	+	NM_001629 TSC_hg19_v1_chr13_+_31309681	72822	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	72873	+	NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein	0.991974	0.0	denovo_WM_7:-51:0.837
chr16	24740553	24740703	reg1001523.p1	11.366	+	BC029649 TSC_hg19_v1_chr16_+_24567629	-173000	+	AF063596 BC101139 BC101140 BC101141 BC101142 BC114353 BC114354 BC118667 BC139830 BC029352 BC063524 AB112074 AB112075 BX648661 TSC_hg19_v1_chr16_+_24552052	-188764	+	TSC_hg19_v1_chr16_+_24550886 NM_006910 NM_018703 NM_032626	-189735	+	TSC_hg19_v1_chr16_+_24741000 NM_014494	370	+	AY035864 TSC_hg19_v1_chr16_+_24788680	47996	+	TSC_hg19_v1_chr16_+_24802422 AL833757	61853	+	BC029649|RBBP6|5930|retinoblastoma binding protein 6##AF063596|RBBP6|5930|retinoblastoma binding protein 6##BC101139|RBBP6|5930|retinoblastoma binding protein 6##BC101140|RBBP6|5930|retinoblastoma binding protein 6##BC101141|RBBP6|5930|retinoblastoma binding protein 6##BC101142|RBBP6|5930|retinoblastoma binding protein 6##BC114353|RBBP6|5930|retinoblastoma binding protein 6##BC114354|RBBP6|5930|retinoblastoma binding protein 6##BC118667|RBBP6|5930|retinoblastoma binding protein 6##BC139830|RBBP6|5930|retinoblastoma binding protein 6##BC029352|RBBP6|5930|retinoblastoma binding protein 6##BC063524|RBBP6|5930|retinoblastoma binding protein 6##AB112074|RBBP6|5930|retinoblastoma binding protein 6##AB112075|RBBP6|5930|retinoblastoma binding protein 6##BX648661|RBBP6|5930|retinoblastoma binding protein 6##NM_006910|RBBP6|5930|retinoblastoma binding protein 6##NM_018703|RBBP6|5930|retinoblastoma binding protein 6##NM_032626|RBBP6|5930|retinoblastoma binding protein 6##NM_014494|TNRC6A|27327|trinucleotide repeat containing 6A##AY035864|TNRC6A|27327|trinucleotide repeat containing 6A##AL833757|TNRC6A|27327|trinucleotide repeat containing 6A	0.99591	0.0	
chr3	139873380	139873502	reg1001385.p2	11.361	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-219189	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-219423	+	TSC_hg19_v1_chr3_-_139396815 AK123208 BC034374 BC036218 NM_001200047 NM_178177	-476613	-	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	523518	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	787326	+	TSC_hg19_v1_chr3_+_140770412 BC051354	897037	+	AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##AK123208|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC034374|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC036218|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_001200047|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_178177|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.998675	0.0	
chr3	28367917	28368097	reg1001334.p1	11.361	+	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	-84909	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-603806	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-604214	-	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	22375	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	22554	-	NM_001040432	63979	+	CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2	1.045709	0.0	denovo_WM_7:-17:0.435	denovo_WM_7:-18:0.435
chr13	31201913	31202055	reg1001406.p2	11.357	+	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	-10021	+	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	-10357	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	-161926	-	AK314143 NM_001204406	85630	+	NM_001629 TSC_hg19_v1_chr13_+_31309681	107680	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	107731	+	NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein	0.974419	0.0	denovo_WM_7:41:0.436	denovo_WM_7:45:0.479
chr19	11692646	11692826	reg1001296.p1	11.357	+	BC111014 TSC_hg19_v1_chr19_-_11689776 AK307164 NM_001111035 NM_001111036	-2954	-	AK225912 NM_001111034	-3145	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	-4206	-	NM_145295 BC098416 AK095639 BC006279 AK074846 BC069232	15555	+	X51760 BC052597 AK308189 NM_001080493 AK300579 AK303213	157022	-	NM_152355 TSC_hg19_v1_chr19_+_11877884 AK095956	185124	+	BC111014|ACP5|54|acid phosphatase 5, tartrate resistant##AK307164|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111035|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111036|ACP5|54|acid phosphatase 5, tartrate resistant##AK225912|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111034|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant##NM_145295|ZNF627|199692|zinc finger protein 627##BC098416|ZNF627|199692|zinc finger protein 627##AK095639|ZNF627|199692|zinc finger protein 627##BC006279|ZNF627|199692|zinc finger protein 627##AK074846|ZNF627|199692|zinc finger protein 627##BC069232|ZNF627|199692|zinc finger protein 627##X51760|ZNF823|55552|zinc finger protein 823##BC052597|ZNF823|55552|zinc finger protein 823##AK308189|ZNF823|55552|zinc finger protein 823##NM_001080493|ZNF823|55552|zinc finger protein 823##AK300579|ZNF823|55552|zinc finger protein 823##AK303213|ZNF823|55552|zinc finger protein 823##NM_152355|ZNF441|126068|zinc finger protein 441##AK095956|ZNF441|126068|zinc finger protein 441	1.351179	0.0	denovo_WM_7:9:0.617	denovo_WM_7:24:0.407
chr15	44101590	44101767	reg1001300.p3	11.354	+	TSC_hg19_v1_chr15_+_44092806 AK022435 AF161485 AF049613	-8876	+	NM_001199885 NM_016400 BC019262	-9059	+	BC113988 DQ103711 NM_001033517 BX647438	-9464	-	AB463886 CU690792 DQ893389 DQ896709 TSC_hg19_v1_chr15_-_44116882 U04209 BC023557 BC050742 AK312867 NM_005926	15180	-	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	17509	+	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	385672	-	AK022435|C15orf63|25764|chromosome 15 open reading frame 63##AF161485|C15orf63|25764|chromosome 15 open reading frame 63##AF049613|C15orf63|25764|chromosome 15 open reading frame 63##NM_001199885|C15orf63|25764|chromosome 15 open reading frame 63##NM_016400|C15orf63|25764|chromosome 15 open reading frame 63##BC019262|C15orf63|25764|chromosome 15 open reading frame 63##DQ103711|SERINC4|619189|serine incorporator 4##NM_001033517|SERINC4|619189|serine incorporator 4##BX647438|SERINC4|619189|serine incorporator 4##DQ893389|MFAP1|4236|microfibrillar-associated protein 1##DQ896709|MFAP1|4236|microfibrillar-associated protein 1##U04209|MFAP1|4236|microfibrillar-associated protein 1##BC023557|MFAP1|4236|microfibrillar-associated protein 1##BC050742|MFAP1|4236|microfibrillar-associated protein 1##AK312867|MFAP1|4236|microfibrillar-associated protein 1##NM_005926|MFAP1|4236|microfibrillar-associated protein 1##NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5	0.999148	0.0	denovo_WM_7:21:0.739
chr2	217007407	217007573	reg1001166.p1	11.352	+	TSC_hg19_v1_chr2_+_216986829 AK026166	-20623	+	TSC_hg19_v1_chr2_+_216974124 J04977 M30938 AK290740 BC095442 BC019027 AB489155 CU676354 DQ892660 DQ895925	-33351	+	TSC_hg19_v1_chr2_+_216974112 AK222603	-33381	+	TSC_hg19_v1_chr2_-_217236666 AB037820 NM_020814	229217	-	NM_014140 TSC_hg19_v1_chr2_+_217277188 AK023780	269708	+	TSC_hg19_v1_chr2_+_217277487 NM_001127207 AF432223 BC043341	269988	+	AK026166|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##J04977|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##M30938|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK290740|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC095442|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC019027|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ892660|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ895925|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK222603|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AB037820|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_020814|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_014140|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AK023780|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##NM_001127207|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AF432223|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##BC043341|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	0.0	0.0	
chr6	34639798	34639943	reg1001508.p1	11.351	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-115774	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-157216	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-205966	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	24676	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	24756	-	NM_003093	85000	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.134019	0.0	
chr12	95968071	95968220	reg1001162.p3	11.349	+	AL136825 NM_032147	-22901	-	AK027434 TSC_hg19_v1_chr12_-_95942575 BC030704 NM_001042403	-25531	-	NM_006838 AK300836 TSC_hg19_v1_chr12_+_95867927 AK315559 U13261 AK055692 U29607 BC013782 AK091730 AX747149 AB463882 DQ891013 DQ894193	-100248	+	TSC_hg19_v1_chr12_-_96184346 AF297711 AK226070 AK315796	216224	-	BC136798 BC136799 AF278532 NM_021229 AF119916 TSC_hg19_v1_chr12_-_96184542	216381	-	TSC_hg19_v1_chr12_+_96252729 NM_003095 BC002505 X85372 AK311752 BC063397	284588	+	AL136825|USP44|84101|ubiquitin specific peptidase 44##NM_032147|USP44|84101|ubiquitin specific peptidase 44##AK027434|USP44|84101|ubiquitin specific peptidase 44##BC030704|USP44|84101|ubiquitin specific peptidase 44##NM_001042403|USP44|84101|ubiquitin specific peptidase 44##NM_006838|METAP2|10988|methionyl aminopeptidase 2##AK300836|METAP2|10988|methionyl aminopeptidase 2##AK315559|METAP2|10988|methionyl aminopeptidase 2##U13261|METAP2|10988|methionyl aminopeptidase 2##AK055692|METAP2|10988|methionyl aminopeptidase 2##BC013782|METAP2|10988|methionyl aminopeptidase 2##AK091730|METAP2|10988|methionyl aminopeptidase 2##DQ891013|METAP2|10988|methionyl aminopeptidase 2##DQ894193|METAP2|10988|methionyl aminopeptidase 2##AF297711|NTN4|59277|netrin 4##AK226070|NTN4|59277|netrin 4##AK315796|NTN4|59277|netrin 4##BC136798|NTN4|59277|netrin 4##BC136799|NTN4|59277|netrin 4##AF278532|NTN4|59277|netrin 4##NM_021229|NTN4|59277|netrin 4##AF119916|NTN4|59277|netrin 4##NM_003095|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC002505|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##X85372|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##AK311752|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC063397|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F	0.998249	0.0	
chr10	17258245	17258394	reg1001431.p2	11.348	+	NM_004412	-14250	-	TSC_hg19_v1_chr10_-_17243660 CR450316 AF045888 AK291417 AF012128 BC047733 AK303428 BX537961 AJ223333 AK299027	-14586	-	AF034611 NM_001081 TSC_hg19_v1_chr10_-_17171878	-86486	-	NM_003380	11938	+	BC066956 TSC_hg19_v1_chr10_+_17270601	12217	+	AK056766 AK091813 AK097336 AK098444 AK222507 AK222602 TSC_hg19_v1_chr10_+_17271276	12957	+	NM_004412|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##CR450316|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF045888|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK291417|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF012128|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BC047733|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK303428|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BX537961|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AJ223333|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK299027|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF034611|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_001081|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_003380|VIM|7431|vimentin##BC066956|VIM|7431|vimentin##AK056766|VIM|7431|vimentin##AK091813|VIM|7431|vimentin##AK097336|VIM|7431|vimentin##AK098444|VIM|7431|vimentin##AK222507|VIM|7431|vimentin##AK222602|VIM|7431|vimentin	0.934663	0.0	denovo_WM_7:-30:0.579
chr19	1102499	1102632	reg1001483.p1	11.348	+	TSC_hg19_v1_chr19_-_1095383 NM_002695	-7173	-	AK122813 TSC_hg19_v1_chr19_-_1095375	-7190	-	AB464042 TSC_hg19_v1_chr19_-_1095353 AK295975 BC004441 D38251 J04965 AK312625 BC034144	-7222	-	BC039849 NM_001039847 NM_002085 TSC_hg19_v1_chr19_+_1103992 X71973 BC022071 BC011836 BC032695 AK225859	1405	+	BC058329 TSC_hg19_v1_chr19_+_1104061 BC021567 BC046163 CU692482	1471	+	TSC_hg19_v1_chr19_+_1104068 BC010157	1527	+	NM_002695|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK122813|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK295975|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC004441|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##D38251|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##J04965|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK312625|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC034144|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC039849|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##NM_001039847|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##NM_002085|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##X71973|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC022071|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC011836|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC032695|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##AK225859|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC058329|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC021567|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC046163|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC010157|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)	0.991749	0.0	denovo_WM_7:-40:0.331	denovo_WM_7:-41:0.331	denovo_WM_7:-42:0.331
chr2	25814945	25815078	reg1001083.p1	11.347	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-249549	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-249648	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-249683	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	81390	-	AB385496 TSC_hg19_v1_chr2_-_26101159	286118	-	TSC_hg19_v1_chr2_-_26101174 AB084279	286162	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.997371	0.0	
chr8	116235168	116235348	reg1001458.p1	11.346	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-1786129	-	AB114605 NM_198124	-1845877	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-5248292	-	TSC_hg19_v1_chr8_-_116680208 AK304046	444962	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	445907	-	TSC_hg19_v1_chr8_-_116681365 AF183810	446077	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.156593	0.0	
chr1	1677560	1677725	reg1001155.p1	11.342	+	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	-181	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	-21866	-	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-53425	-	AK296722 NM_001198995	12438	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	32244	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	32627	-	AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase	0.997912	0.0	
chr1	111670693	111670861	reg1001326.p1	11.341	+	TSC_hg19_v1_chr1_-_111506545 AY190122 NM_001006945 NM_018372 CR933637	-164226	-	BC040693 TSC_hg19_v1_chr1_+_111415791 M37033 M60871	-254975	+	NM_000560 TSC_hg19_v1_chr1_+_111415769 AK313582 AK298723	-255022	+	BC049196 NM_001007794 AL833102 TSC_hg19_v1_chr1_+_111682370	11532	+	AL833098 TSC_hg19_v1_chr1_-_111682678 AY358492	11907	-	TSC_hg19_v1_chr1_-_111682718 AY336747 BC091509	11954	-	AY190122|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_001006945|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_018372|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##BC040693|CD53|963|CD53 molecule##M37033|CD53|963|CD53 molecule##M60871|CD53|963|CD53 molecule##NM_000560|CD53|963|CD53 molecule##AK313582|CD53|963|CD53 molecule##AK298723|CD53|963|CD53 molecule##BC049196|CEPT1|10390|choline/ethanolamine phosphotransferase 1##NM_001007794|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833102|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833098|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY358492|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY336747|DRAM2|128338|DNA-damage regulated autophagy modulator 2##BC091509|DRAM2|128338|DNA-damage regulated autophagy modulator 2	0.994667	0.0	
chr4	87941189	87941337	reg1001629.p1	11.341	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-12942	+	TSC_hg19_v1_chr4_+_87857481 L13743	-83780	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-85048	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	26988	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	200399	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	302762	-	L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13	0.0	0.0	
chr14	77838638	77838781	reg1001328.p1	11.340	+	NM_001513	-51004	+	NM_145870 NM_145871 AK315154 BC001453 TSC_hg19_v1_chr14_+_77787378 AK309054 AK315609 BC052245 BC069047 AJ001838 U86529 CR456987	-51339	+	CU689220 AB209114 BC031651 TSC_hg19_v1_chr14_-_77787215 BX248027 AF105020 AY090480 NM_013382	-51579	-	AY598329 NM_213601 TSC_hg19_v1_chr14_-_77843438 AK095650 BC101510	4717	-	BC104834 BC104836 AK093282 NM_001010860	5042	+	CU688228 BC066965 AK057371 NM_001113475	50605	-	NM_001513|GSTZ1|2954|glutathione transferase zeta 1##NM_145870|GSTZ1|2954|glutathione transferase zeta 1##NM_145871|GSTZ1|2954|glutathione transferase zeta 1##AK315154|GSTZ1|2954|glutathione transferase zeta 1##BC001453|GSTZ1|2954|glutathione transferase zeta 1##AK309054|GSTZ1|2954|glutathione transferase zeta 1##AK315609|GSTZ1|2954|glutathione transferase zeta 1##BC052245|GSTZ1|2954|glutathione transferase zeta 1##AJ001838|GSTZ1|2954|glutathione transferase zeta 1##U86529|GSTZ1|2954|glutathione transferase zeta 1##CR456987|GSTZ1|2954|glutathione transferase zeta 1##AB209114|POMT2|29954|protein-O-mannosyltransferase 2##BC031651|POMT2|29954|protein-O-mannosyltransferase 2##BX248027|POMT2|29954|protein-O-mannosyltransferase 2##AF105020|POMT2|29954|protein-O-mannosyltransferase 2##AY090480|POMT2|29954|protein-O-mannosyltransferase 2##NM_013382|POMT2|29954|protein-O-mannosyltransferase 2##AY598329|TMED8|283578|transmembrane emp24 protein transport domain containing 8##NM_213601|TMED8|283578|transmembrane emp24 protein transport domain containing 8##AK095650|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC101510|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC104834|SAMD15|161394|sterile alpha motif domain containing 15##BC104836|SAMD15|161394|sterile alpha motif domain containing 15##AK093282|SAMD15|161394|sterile alpha motif domain containing 15##NM_001010860|SAMD15|161394|sterile alpha motif domain containing 15##BC066965|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##AK057371|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##NM_001113475|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1	0.0	0.0	
chr18	57553128	57553285	reg1001352.p1	11.331	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-188556	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-188615	-	TSC_hg19_v1_chr18_-_57026487 DQ891254 DQ894440 U09716 AK223208 AK225108 AK312869 BC008401 BC032330 BC017858 X71661 AK301244 NM_005570	-526720	-	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	14023	+	AK314130 NM_005912	486794	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1604568	+	NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##DQ891254|LMAN1|3998|lectin, mannose-binding, 1##DQ894440|LMAN1|3998|lectin, mannose-binding, 1##U09716|LMAN1|3998|lectin, mannose-binding, 1##AK223208|LMAN1|3998|lectin, mannose-binding, 1##AK225108|LMAN1|3998|lectin, mannose-binding, 1##AK312869|LMAN1|3998|lectin, mannose-binding, 1##BC008401|LMAN1|3998|lectin, mannose-binding, 1##BC032330|LMAN1|3998|lectin, mannose-binding, 1##BC017858|LMAN1|3998|lectin, mannose-binding, 1##X71661|LMAN1|3998|lectin, mannose-binding, 1##AK301244|LMAN1|3998|lectin, mannose-binding, 1##NM_005570|LMAN1|3998|lectin, mannose-binding, 1##NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2	0.989881	0.0	denovo_WM_7:6:0.905
chr14	103060950	103061102	reg1001288.p2	11.328	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-1865	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-2028	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-84912	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	182793	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	182874	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	327972	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.990449	0.0	denovo_WM_7:-19:0.821
chr4	119681755	119681912	reg1001417.p2	11.328	+	TSC_hg19_v1_chr4_+_119606557 AK055555 AB046847 BC006565 BC007449 NM_020961 AB384254 CU675451	-75222	+	TSC_hg19_v1_chr4_+_119512929 AK024248	-168899	+	TSC_hg19_v1_chr4_-_119273910 AJ001531 BC007761 NM_003619	-407908	-	TSC_hg19_v1_chr4_-_119757254 AK291765 AB018298 BC035761	75394	-	TSC_hg19_v1_chr4_-_119757290 NM_014822	75508	-	TSC_hg19_v1_chr4_+_119810008 AL833547 NM_001128933 NM_001128934 NM_133477 BC150629 AK307711 CR936673 AK304121 AL832031 AL833294 AL832363 BC136256 AM392848 AM393854 EU481975	128251	+	AK055555|METTL14|57721|methyltransferase like 14##AB046847|METTL14|57721|methyltransferase like 14##BC006565|METTL14|57721|methyltransferase like 14##BC007449|METTL14|57721|methyltransferase like 14##NM_020961|METTL14|57721|methyltransferase like 14##AK024248|LOC729218|729218|uncharacterized LOC729218##AJ001531|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##BC007761|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##NM_003619|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##AK291765|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##AB018298|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##BC035761|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##NM_014822|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##AL833547|SYNPO2|171024|synaptopodin 2##NM_001128933|SYNPO2|171024|synaptopodin 2##NM_001128934|SYNPO2|171024|synaptopodin 2##NM_133477|SYNPO2|171024|synaptopodin 2##BC150629|SYNPO2|171024|synaptopodin 2##AK307711|SYNPO2|171024|synaptopodin 2##CR936673|SYNPO2|171024|synaptopodin 2##AK304121|SYNPO2|171024|synaptopodin 2##AL832031|SYNPO2|171024|synaptopodin 2##AL833294|SYNPO2|171024|synaptopodin 2##AL832363|SYNPO2|171024|synaptopodin 2##BC136256|SYNPO2|171024|synaptopodin 2##AM392848|SYNPO2|171024|synaptopodin 2##AM393854|SYNPO2|171024|synaptopodin 2##EU481975|SYNPO2|171024|synaptopodin 2	0.912399	0.0	denovo_WM_7:37:0.764
chr12	828826	828961	reg1001370.p1	11.326	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-56178	-	TSC_hg19_v1_chr12_-_752800 AK298043	-76074	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-76715	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	33263	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	33863	+	BC013629 TSC_hg19_v1_chr12_+_1017145	188189	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.992924	0.0	
chr20	30679771	30679893	reg1001446.p2	11.325	+	TSC_hg19_v1_chr20_+_30640055 NM_001172129 NM_001172130 NM_001172131 NM_001172132 NM_001172133 NM_002110 AK289896 AK225819 AK290928 AK298726 AK026432 BC108930 BC108931 BC113854 BC114463 AK314335 BC073748 BC094847 BC014435	-39786	+	NM_080625 AK057090 BC030254	-81584	+	AY534245 NM_001011718 TSC_hg19_v1_chr20_+_30555960	-123943	+	TSC_hg19_v1_chr20_+_30697308 NM_014742	17537	+	TSC_hg19_v1_chr20_+_30697532 AK126534 AK294980 AK296500 AK302439 BC021107 D87444	17709	+	TSC_hg19_v1_chr20_-_30795547 AK292450 BC000197 D83784 AF006005 BC023655 NM_002657	115643	-	NM_001172129|HCK|3055|hemopoietic cell kinase##NM_001172130|HCK|3055|hemopoietic cell kinase##NM_001172131|HCK|3055|hemopoietic cell kinase##NM_001172132|HCK|3055|hemopoietic cell kinase##NM_001172133|HCK|3055|hemopoietic cell kinase##NM_002110|HCK|3055|hemopoietic cell kinase##AK289896|HCK|3055|hemopoietic cell kinase##AK225819|HCK|3055|hemopoietic cell kinase##AK290928|HCK|3055|hemopoietic cell kinase##AK298726|HCK|3055|hemopoietic cell kinase##AK026432|HCK|3055|hemopoietic cell kinase##BC108930|HCK|3055|hemopoietic cell kinase##BC108931|HCK|3055|hemopoietic cell kinase##BC113854|HCK|3055|hemopoietic cell kinase##BC114463|HCK|3055|hemopoietic cell kinase##AK314335|HCK|3055|hemopoietic cell kinase##BC073748|HCK|3055|hemopoietic cell kinase##BC094847|HCK|3055|hemopoietic cell kinase##BC014435|HCK|3055|hemopoietic cell kinase##NM_080625|C20orf160|140706|chromosome 20 open reading frame 160##AK057090|C20orf160|140706|chromosome 20 open reading frame 160##BC030254|C20orf160|140706|chromosome 20 open reading frame 160##AY534245|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_001011718|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_014742|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK126534|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK294980|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK296500|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK302439|TM9SF4|9777|transmembrane 9 superfamily protein member 4##BC021107|TM9SF4|9777|transmembrane 9 superfamily protein member 4##D87444|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK292450|PLAGL2|5326|pleiomorphic adenoma gene-like 2##D83784|PLAGL2|5326|pleiomorphic adenoma gene-like 2##AF006005|PLAGL2|5326|pleiomorphic adenoma gene-like 2##BC023655|PLAGL2|5326|pleiomorphic adenoma gene-like 2##NM_002657|PLAGL2|5326|pleiomorphic adenoma gene-like 2	1.84259	0.99093	denovo_WM_7:-22:0.759	CTCF.p2:24:0.991	denovo_WM_7:-41:0.323	denovo_WM_7:-43:0.555
chr22	31890105	31890276	reg1001490.p1	11.322	+	TSC_hg19_v1_chr22_-_31885787 BC032941 AK314636 NM_001164502 NM_019843 DQ655937	-4343	-	TSC_hg19_v1_chr22_-_31885761 BC012734	-4446	-	BC033028 NM_001164501 TSC_hg19_v1_chr22_-_31885678 AF240775	-4583	-	TSC_hg19_v1_chr22_+_31892148 AB011114 NM_001007467 NM_014775	1982	+	BC129926 BC129945 TSC_hg19_v1_chr22_+_31892499 AK303362 AK293987	2251	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	2356	+	BC032941|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AK314636|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_001164502|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_019843|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##DQ655937|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##BC012734|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##BC033028|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_001164501|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AF240775|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AB011114|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##NM_001007467|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##NM_014775|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC129926|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC129945|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK303362|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK293987|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)	0.993136	0.0	denovo_WM_7:-62:0.435	denovo_WM_7:-63:0.438
chr7	4753045	4753188	reg1001403.p1	11.322	+	TSC_hg19_v1_chr7_+_4722091 AX721089 AK302243 AK122663	-30865	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	-31278	+	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	-1412117	+	TSC_hg19_v1_chr7_+_4815264 NM_014855 BC037399	62145	+	TSC_hg19_v1_chr7_+_4815296 AB007875	62170	+	DQ891226 DQ894411 AF218840 BC036653 NM_020144 TSC_hg19_v1_chr7_-_4901662 AK312788	148433	-	AK302243|FOXK1|221937|forkhead box K1##AK122663|FOXK1|221937|forkhead box K1##NM_001037165|FOXK1|221937|forkhead box K1##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_014855|KIAA0415|9907|KIAA0415##BC037399|KIAA0415|9907|KIAA0415##AB007875|KIAA0415|9907|KIAA0415##DQ891226|PAPOLB|56903|poly(A) polymerase beta (testis specific)##DQ894411|PAPOLB|56903|poly(A) polymerase beta (testis specific)##AF218840|PAPOLB|56903|poly(A) polymerase beta (testis specific)##BC036653|PAPOLB|56903|poly(A) polymerase beta (testis specific)##NM_020144|PAPOLB|56903|poly(A) polymerase beta (testis specific)##AK312788|PAPOLB|56903|poly(A) polymerase beta (testis specific)	0.997237	0.011353	denovo_WM_7:17:0.436
chr17	65647089	65647269	reg1001560.p1	11.321	+	BC007905 NM_012417 NM_181671	-273256	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-273591	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-273770	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	66871	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	174523	+	AK293224 TSC_hg19_v1_chr17_+_65822221	175038	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.370185	0.0	
chr21	28221906	28222024	reg1001272.p1	11.321	+	TSC_hg19_v1_chr21_-_28217729 AF207664 AK314475 BC036515 BX647388 DQ108407 NM_006988	-4253	-	AB385453 CU690360 DQ896765 EU176454 AB037767 AF060152 AF170084 TSC_hg19_v1_chr21_-_28217667	-4494	-	AY061853 AF401639 AK223576 AK313231 BC036761 AL833200 NM_052954 AK054581 AK304124	-276531	-	TSC_hg19_v1_chr21_-_28339470 AK094057 NM_007038	117474	-	TSC_hg19_v1_chr21_-_30257688 AB590951 BC011554 AK314100 AK225515 AF139682 NM_013240 NM_182749	2035698	-	BC007525 AB384515 TSC_hg19_v1_chr21_-_30365185 AF161350 AB018257 BC150284 AB621822 BC029371 BC140790 AK001915 BC031633 NM_015565	2143228	-	AF207664|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##AK314475|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##BC036515|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##BX647388|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##DQ108407|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##NM_006988|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##DQ896765|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##EU176454|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##AB037767|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##AF060152|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##AF170084|ADAMTS1|9510|ADAM metallopeptidase with thrombospondin type 1 motif, 1##AY061853|CYYR1|116159|cysteine/tyrosine-rich 1##AF401639|CYYR1|116159|cysteine/tyrosine-rich 1##AK223576|CYYR1|116159|cysteine/tyrosine-rich 1##AK313231|CYYR1|116159|cysteine/tyrosine-rich 1##BC036761|CYYR1|116159|cysteine/tyrosine-rich 1##AL833200|CYYR1|116159|cysteine/tyrosine-rich 1##NM_052954|CYYR1|116159|cysteine/tyrosine-rich 1##AK054581|CYYR1|116159|cysteine/tyrosine-rich 1##AK304124|CYYR1|116159|cysteine/tyrosine-rich 1##AK094057|ADAMTS5|11096|ADAM metallopeptidase with thrombospondin type 1 motif, 5##NM_007038|ADAMTS5|11096|ADAM metallopeptidase with thrombospondin type 1 motif, 5##BC011554|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK314100|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AK225515|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##AF139682|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_013240|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##NM_182749|N6AMT1|29104|N-6 adenine-specific DNA methyltransferase 1 (putative)##BC007525|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AF161350|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AB018257|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC150284|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC029371|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC140790|LTN1|26046|listerin E3 ubiquitin protein ligase 1##AK001915|LTN1|26046|listerin E3 ubiquitin protein ligase 1##BC031633|LTN1|26046|listerin E3 ubiquitin protein ligase 1##NM_015565|LTN1|26046|listerin E3 ubiquitin protein ligase 1	0.977312	0.247802	CTCF.p2:-19:0.248	denovo_WM_7:26:0.456	denovo_WM_7:27:0.456
chr14	25179778	25179937	reg1001242.p1	11.317	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-76439	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-100996	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-134411	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	339381	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1887131	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	4056371	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.991388	0.985537	CTCF.p2:-57:0.986
chr1	9175857	9175983	reg1001120.p1	11.315	+	TSC_hg19_v1_chr1_-_9129695 M55531 AK290398 AK294368 NM_001135585 NM_003039	-46144	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	-46279	-	TSC_hg19_v1_chr1_-_9129605 DQ892291 DQ895491 CU674838 AK300091	-46321	-	DQ892804 DQ896051 TSC_hg19_v1_chr1_-_9189169 AK022194 AK292888 AK304154 AY768808 NM_024980 BC094733 BC018691	13301	-	TSC_hg19_v1_chr1_+_9294832 BC081559	118895	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	118997	+	M55531|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK290398|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK294368|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_001135585|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_003039|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892291|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ895491|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK300091|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892804|GPR157|80045|G protein-coupled receptor 157##DQ896051|GPR157|80045|G protein-coupled receptor 157##AK022194|GPR157|80045|G protein-coupled receptor 157##AK292888|GPR157|80045|G protein-coupled receptor 157##AK304154|GPR157|80045|G protein-coupled receptor 157##AY768808|GPR157|80045|G protein-coupled receptor 157##NM_024980|GPR157|80045|G protein-coupled receptor 157##BC018691|GPR157|80045|G protein-coupled receptor 157##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	0.999698	0.0	denovo_WM_7:-19:0.849
chrX	19867756	19867883	reg1001129.p1	11.315	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-49907	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-49944	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-178763	-	TSC_hg19_v1_chrX_-_19905450 AY542305	37644	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	37813	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	37885	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.993251	0.0	
chr5	116035178	116035326	reg1001710.p1	11.313	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-124738	-	TSC_hg19_v1_chr5_+_115898220 D28352	-137028	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-614531	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2288986	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2371559	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2371913	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.176628	0.0	denovo_WM_7:36:0.268	denovo_WM_7:37:0.269	denovo_WM_7:38:0.402
chr16	67522837	67522975	reg1001350.p1	11.311	+	NM_001138 U88063	-5191	-	CU679153 DQ893270 DQ896601 X71490 TSC_hg19_v1_chr16_-_67515051 AK300570 AK313035 AK125522 BC008861 NM_004691	-7862	-	TSC_hg19_v1_chr16_+_67465023 U26726 BC036780 BC064536 NM_000196 U14631	-57876	+	TSC_hg19_v1_chr16_+_67562734 NM_024519 AK127792 NM_001193522 AK307467 BC012730	39835	+	NM_001193523 AK293748	40678	+	TSC_hg19_v1_chr16_+_67571364 NM_001193524 BC021284 AK295677	48481	+	NM_001138|AGRP|181|agouti related protein homolog (mouse)##U88063|AGRP|181|agouti related protein homolog (mouse)##DQ893270|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##DQ896601|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##X71490|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK300570|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK313035|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK125522|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##BC008861|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##NM_004691|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##U26726|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC036780|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC064536|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_000196|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##U14631|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_024519|FAM65A|79567|family with sequence similarity 65, member A##AK127792|FAM65A|79567|family with sequence similarity 65, member A##NM_001193522|FAM65A|79567|family with sequence similarity 65, member A##AK307467|FAM65A|79567|family with sequence similarity 65, member A##NM_001193523|FAM65A|79567|family with sequence similarity 65, member A##AK293748|FAM65A|79567|family with sequence similarity 65, member A##NM_001193524|FAM65A|79567|family with sequence similarity 65, member A##AK295677|FAM65A|79567|family with sequence similarity 65, member A	0.983329	0.0	denovo_WM_7:-43:0.881
chr4	185505031	185505160	reg1001192.p1	11.310	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	-109414	-	BC035035 AY358676 AK057370 NM_153343	-366030	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-677184	+	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	65506	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	65738	+	TSC_hg19_v1_chr4_+_185570923 BC064600 AK307317	65834	+	X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111##BC064600|CCDC111|201973|coiled-coil domain containing 111##AK307317|CCDC111|201973|coiled-coil domain containing 111	0.99941	0.0	denovo_WM_7:1:0.739
chr3	46968809	46968940	reg1001441.p1	11.305	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-45132	+	BC112221 BC112247 NM_000316 U17418 X68596	-49625	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-63949	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	49371	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	52373	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	60596	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.0	0.0	
chr6	33591015	33591180	reg1001368.p2	11.303	+	TSC_hg19_v1_chr6_+_33589123 D26351 NM_002224 BC146646 U01062	-1903	+	TSC_hg19_v1_chr6_-_33548037 AK303422 AK293547 NM_001188	-43054	-	U23765 U16811 TSC_hg19_v1_chr6_-_33547998 X84213 BC004431 BC032789 BC110337 AK091807 AK292093	-43182	-	EF139858 AF086234 TSC_hg19_v1_chr6_-_33679476 AK311835	88366	-	TSC_hg19_v1_chr6_-_33679505 AY568085 BC006007 NM_032340	88416	-	AK056586 AK223572 AK289935 BC089389 NM_001142883 NM_054111	123624	-	D26351|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##NM_002224|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##BC146646|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##U01062|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##AK303422|BAK1|578|BCL2-antagonist/killer 1##AK293547|BAK1|578|BCL2-antagonist/killer 1##NM_001188|BAK1|578|BCL2-antagonist/killer 1##U23765|BAK1|578|BCL2-antagonist/killer 1##U16811|BAK1|578|BCL2-antagonist/killer 1##X84213|BAK1|578|BCL2-antagonist/killer 1##BC004431|BAK1|578|BCL2-antagonist/killer 1##BC032789|BAK1|578|BCL2-antagonist/killer 1##BC110337|BAK1|578|BCL2-antagonist/killer 1##AK091807|BAK1|578|BCL2-antagonist/killer 1##AK292093|BAK1|578|BCL2-antagonist/killer 1##AF086234|C6orf125|84300|chromosome 6 open reading frame 125##AK311835|C6orf125|84300|chromosome 6 open reading frame 125##AY568085|C6orf125|84300|chromosome 6 open reading frame 125##BC006007|C6orf125|84300|chromosome 6 open reading frame 125##NM_032340|C6orf125|84300|chromosome 6 open reading frame 125##AK056586|IP6K3|117283|inositol hexakisphosphate kinase 3##AK223572|IP6K3|117283|inositol hexakisphosphate kinase 3##AK289935|IP6K3|117283|inositol hexakisphosphate kinase 3##BC089389|IP6K3|117283|inositol hexakisphosphate kinase 3##NM_001142883|IP6K3|117283|inositol hexakisphosphate kinase 3##NM_054111|IP6K3|117283|inositol hexakisphosphate kinase 3	0.987042	0.0	denovo_WM_7:14:0.237	denovo_WM_7:15:0.237	denovo_WM_7:16:0.237	denovo_WM_7:17:0.237
chr20	25420137	25420291	reg1001855.p1	11.299	+	TSC_hg19_v1_chr20_+_25388342 D80008 AK294593	-31864	+	BC012542 NM_021067 TSC_hg19_v1_chr20_+_25388323	-31892	+	TSC_hg19_v1_chr20_-_25371452 BC014049 NM_001042472 NM_015600	-48688	-	TSC_hg19_v1_chr20_-_25566168 AB023197 EU718622 NM_025176 AK309298	145953	-	EU831914 EU832008 TSC_hg19_v1_chr20_-_25604651 BC022552 AK055472 AL833116 NM_152667	184404	-	BC034569 TSC_hg19_v1_chr20_+_25604757	184505	+	D80008|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)##AK294593|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)##BC012542|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)##NM_021067|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)##BC014049|ABHD12|26090|abhydrolase domain containing 12##NM_001042472|ABHD12|26090|abhydrolase domain containing 12##NM_015600|ABHD12|26090|abhydrolase domain containing 12##AB023197|NINL|22981|ninein-like##EU718622|NINL|22981|ninein-like##NM_025176|NINL|22981|ninein-like##AK309298|NINL|22981|ninein-like##EU831914|NANP|140838|N-acetylneuraminic acid phosphatase##EU832008|NANP|140838|N-acetylneuraminic acid phosphatase##BC022552|NANP|140838|N-acetylneuraminic acid phosphatase##AK055472|NANP|140838|N-acetylneuraminic acid phosphatase##AL833116|NANP|140838|N-acetylneuraminic acid phosphatase##NM_152667|NANP|140838|N-acetylneuraminic acid phosphatase##BC034569|ZNF337|26152|zinc finger protein 337	0.121323	0.0	
chr16	71563391	71563563	reg1001554.p2	11.294	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-3384	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-40262	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-67289	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	47495	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	96620	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	185223	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	1.982464	0.0	denovo_WM_7:-6:0.656	denovo_WM_7:-7:0.332	denovo_WM_7:-21:0.325	denovo_WM_7:-22:0.649
chr2	148799953	148800081	reg1001345.p1	11.293	+	NM_181742	-20845	-	TSC_hg19_v1_chr2_+_148778636 NM_018328 EF542797	-21408	+	TSC_hg19_v1_chr2_-_148778310 AK225092 BC005388 AF022108 AF047598 AF132596 BC014847 AK295721 AK291989 AK294878 AK298862 NM_001190882 NM_001190879 AK299749 NM_002552 NM_001190881 NM_181741	-21655	-	TSC_hg19_v1_chr2_+_149402332 AK125789	602319	+	NM_015630 AF286904 BC093818 BC093820	602586	+	TSC_hg19_v1_chr2_+_149632795 NM_004522 BC002721 BC025961 AB011103	832779	+	NM_181742|ORC4|5000|origin recognition complex, subunit 4##NM_018328|MBD5|55777|methyl-CpG binding domain protein 5##EF542797|MBD5|55777|methyl-CpG binding domain protein 5##AK225092|ORC4|5000|origin recognition complex, subunit 4##BC005388|ORC4|5000|origin recognition complex, subunit 4##AF022108|ORC4|5000|origin recognition complex, subunit 4##AF047598|ORC4|5000|origin recognition complex, subunit 4##AF132596|ORC4|5000|origin recognition complex, subunit 4##BC014847|ORC4|5000|origin recognition complex, subunit 4##AK295721|ORC4|5000|origin recognition complex, subunit 4##AK291989|ORC4|5000|origin recognition complex, subunit 4##AK294878|ORC4|5000|origin recognition complex, subunit 4##AK298862|ORC4|5000|origin recognition complex, subunit 4##NM_001190882|ORC4|5000|origin recognition complex, subunit 4##NM_001190879|ORC4|5000|origin recognition complex, subunit 4##AK299749|ORC4|5000|origin recognition complex, subunit 4##NM_002552|ORC4|5000|origin recognition complex, subunit 4##NM_001190881|ORC4|5000|origin recognition complex, subunit 4##NM_181741|ORC4|5000|origin recognition complex, subunit 4##AK125789|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##NM_015630|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##AF286904|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##BC093818|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##BC093820|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##NM_004522|KIF5C|3800|kinesin family member 5C##BC002721|KIF5C|3800|kinesin family member 5C##BC025961|KIF5C|3800|kinesin family member 5C##AB011103|KIF5C|3800|kinesin family member 5C	0.187477	0.0	
chr2	30510878	30511058	reg1001354.p1	11.290	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	-56466	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-141092	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	-141135	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	159180	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	519325	-	AK122747 NM_001253827	841529	-	AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)##BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13##AK122747|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253827|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)	0.993935	0.0	denovo_WM_7:12:0.459	denovo_WM_7:13:0.459
chr3	105891790	105891908	reg1001238.p1	11.290	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-304042	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-470795	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-806027	+	TSC_hg19_v1_chr3_-_106959482 BC036229	1067630	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1067743	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1204461	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.997808	0.0	
chr6	149816089	149816250	reg1001498.p2	11.288	+	TSC_hg19_v1_chr6_-_149806151 AB458221 AB458222 BC157832 NM_207360	-10026	-	TSC_hg19_v1_chr6_-_149806031 AK127932	-10102	-	AY340238 NM_001002255 BC130305 HQ258040	-94661	+	TSC_hg19_v1_chr6_-_149867153 CU676802 GQ129364 GQ129365 BC064134	50975	-	TSC_hg19_v1_chr6_-_149867172 AF357880 AK092069 AX747342 BX537536 BC107684	50998	-	BC020986 TSC_hg19_v1_chr6_-_149867195 AK315388 NM_139126	51036	-	AB458221|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458222|ZC3H12D|340152|zinc finger CCCH-type containing 12D##BC157832|ZC3H12D|340152|zinc finger CCCH-type containing 12D##NM_207360|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AK127932|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##GQ129364|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129365|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC064134|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AF357880|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AK092069|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BX537536|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC107684|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC020986|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##AK315388|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##NM_139126|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4	0.997274	0.0	denovo_WM_7:-17:0.771
chr7	95106387	95106517	reg1001389.p2	11.288	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-42091	-	L48516 AF320003 AF329433 CU687094 TSC_hg19_v1_chr7_-_95025687 AK301772 BC070374 AK304282 NM_000940	-80796	-	TSC_hg19_v1_chr7_-_94953845 D84371 U53784 Z70723 NM_000446	-152597	-	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	8841	+	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	119411	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	295456	+	AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##L48516|PON3|5446|paraoxonase 3##AF320003|PON3|5446|paraoxonase 3##AF329433|PON3|5446|paraoxonase 3##BC070374|PON3|5446|paraoxonase 3##AK304282|PON3|5446|paraoxonase 3##NM_000940|PON3|5446|paraoxonase 3##D84371|PON1|5444|paraoxonase 1##U53784|PON1|5444|paraoxonase 1##Z70723|PON1|5444|paraoxonase 1##NM_000446|PON1|5444|paraoxonase 1##BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1	0.895045	0.57564	denovo_WM_7:-26:0.657	denovo_WM_7:-27:0.202	CTCF.p2:32:0.576
chr15	79281103	79281251	reg1001369.p1	11.285	+	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	-43778	-	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	-43842	-	TSC_hg19_v1_chr15_+_79165343 AK300789 BC067826 AB385578 CU692730 DQ892602 DQ895837 AK310181	-115814	+	NM_153815 S62035	16824	-	L26584 CU691844 AB385192 TSC_hg19_v1_chr15_-_79382954	101722	-	AK290135 TSC_hg19_v1_chr15_-_79383114 BC040275 NM_001145648 NM_002891	101971	-	AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##AK300789|MORF4L1|10933|mortality factor 4 like 1##BC067826|MORF4L1|10933|mortality factor 4 like 1##DQ892602|MORF4L1|10933|mortality factor 4 like 1##DQ895837|MORF4L1|10933|mortality factor 4 like 1##AK310181|MORF4L1|10933|mortality factor 4 like 1##NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##L26584|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AK290135|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##BC040275|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##NM_001145648|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##NM_002891|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1	0.996263	0.0	denovo_WM_7:12:0.245	denovo_WM_7:13:0.245	denovo_WM_7:14:0.245	denovo_WM_7:15:0.245
chr4	110360505	110360669	reg1001578.p1	11.284	+	TSC_hg19_v1_chr4_+_110354993 BC040137 AK300278	-5412	+	BC117135 BC143268 BC143269 BC143276 TSC_hg19_v1_chr4_+_110354970 NM_001042734 NM_006323	-5639	+	TSC_hg19_v1_chr4_-_110354918 BC009800	-5644	-	TSC_hg19_v1_chr4_+_110481443 NM_017918 AK291098 BC002633 AK095936 AK311030	120830	+	AB590350 DQ894589 EU176306 U20537 TSC_hg19_v1_chr4_-_110624602 BC000305 BC004460 NM_001226 NM_032992 U20536	264004	-	DQ892725 DQ896860 CU677869 TSC_hg19_v1_chr4_-_110651216 AF306567 AF332892 AY359024 BC017218 AK075389 AK313081 NM_030821	290535	-	BC040137|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##AK300278|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC117135|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143268|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143269|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143276|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_001042734|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_006323|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC009800|1/2-SBSRNA4|100533182|lncRNA_BC009800##NM_017918|CCDC109B|55013|coiled-coil domain containing 109B##AK291098|CCDC109B|55013|coiled-coil domain containing 109B##BC002633|CCDC109B|55013|coiled-coil domain containing 109B##AK095936|CCDC109B|55013|coiled-coil domain containing 109B##AK311030|CCDC109B|55013|coiled-coil domain containing 109B##DQ894589|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##EU176306|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20537|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC000305|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC004460|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_001226|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_032992|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20536|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##DQ892725|PLA2G12A|81579|phospholipase A2, group XIIA##DQ896860|PLA2G12A|81579|phospholipase A2, group XIIA##AF306567|PLA2G12A|81579|phospholipase A2, group XIIA##AF332892|PLA2G12A|81579|phospholipase A2, group XIIA##AY359024|PLA2G12A|81579|phospholipase A2, group XIIA##BC017218|PLA2G12A|81579|phospholipase A2, group XIIA##AK075389|PLA2G12A|81579|phospholipase A2, group XIIA##AK313081|PLA2G12A|81579|phospholipase A2, group XIIA##NM_030821|PLA2G12A|81579|phospholipase A2, group XIIA	2.974393	0.0	denovo_WM_7:51:0.932	denovo_WM_7:66:0.950	denovo_WM_7:81:0.968
chr7	39988627	39988806	reg1001203.p1	11.281	+	TSC_hg19_v1_chr7_+_39773192 BC038571	-215484	+	TSC_hg19_v1_chr7_+_39663298 AK308109	-325408	+	TSC_hg19_v1_chr7_+_39663204 BC039858	-325505	+	TSC_hg19_v1_chr7_+_39989642 BC080601	910	+	BC064414 TSC_hg19_v1_chr7_+_39989879	1168	+	TSC_hg19_v1_chr7_+_39989958 AK092534 NM_003718 NM_031267	1243	+	BC038571|LINC00265|349114|long intergenic non-protein coding RNA 265##AK308109|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC039858|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC080601|CDK13|8621|cyclin-dependent kinase 13##AK092534|CDK13|8621|cyclin-dependent kinase 13##NM_003718|CDK13|8621|cyclin-dependent kinase 13##NM_031267|CDK13|8621|cyclin-dependent kinase 13	0.995796	0.0	
chr5	80802798	80802948	reg1001374.p1	11.280	+	BC075011 BC075010 AK122960 AB078619 BC089437 NM_130767 TSC_hg19_v1_chr5_-_80690052	-112871	-	NM_001131035 NM_001131036 NM_032280 AL512712 TSC_hg19_v1_chr5_+_80597439 BC032736 AK314160 BC022799 BC014841	-205434	+	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	-205501	-	TSC_hg19_v1_chr5_-_81046929 AB528651 CU677799 DQ891620 DQ894812 EU176592 EU831646 EU831730 AK293544 AK074537 AK294864 AK297494 AF161465 AF077048 AK299858 AK312337 CR936787 AL080076 BC017020	244026	-	TSC_hg19_v1_chr5_-_81046990 NM_012446	244235	-	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	464972	+	BC075011|ACOT12|134526|acyl-CoA thioesterase 12##BC075010|ACOT12|134526|acyl-CoA thioesterase 12##AK122960|ACOT12|134526|acyl-CoA thioesterase 12##AB078619|ACOT12|134526|acyl-CoA thioesterase 12##BC089437|ACOT12|134526|acyl-CoA thioesterase 12##NM_130767|ACOT12|134526|acyl-CoA thioesterase 12##NM_001131035|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_001131036|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_032280|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AL512712|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC032736|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK314160|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC022799|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC014841|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067##DQ891620|SSBP2|23635|single-stranded DNA binding protein 2##DQ894812|SSBP2|23635|single-stranded DNA binding protein 2##EU176592|SSBP2|23635|single-stranded DNA binding protein 2##EU831646|SSBP2|23635|single-stranded DNA binding protein 2##EU831730|SSBP2|23635|single-stranded DNA binding protein 2##AK293544|SSBP2|23635|single-stranded DNA binding protein 2##AK074537|SSBP2|23635|single-stranded DNA binding protein 2##AK294864|SSBP2|23635|single-stranded DNA binding protein 2##AK297494|SSBP2|23635|single-stranded DNA binding protein 2##AF161465|SSBP2|23635|single-stranded DNA binding protein 2##AF077048|SSBP2|23635|single-stranded DNA binding protein 2##AK299858|SSBP2|23635|single-stranded DNA binding protein 2##AK312337|SSBP2|23635|single-stranded DNA binding protein 2##CR936787|SSBP2|23635|single-stranded DNA binding protein 2##AL080076|SSBP2|23635|single-stranded DNA binding protein 2##BC017020|SSBP2|23635|single-stranded DNA binding protein 2##NM_012446|SSBP2|23635|single-stranded DNA binding protein 2##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)	0.708655	0.845216	denovo_WM_7:-18:0.541	CTCF.p2:104:0.845
chr16	49034579	49034711	reg1001891.p1	11.277	+	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	-390529	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-615393	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-634854	-	AB527638 TSC_hg19_v1_chr16_-_49315397	280748	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	280855	-	M58583 TSC_hg19_v1_chr16_-_49315772 AK314276 NM_004352	281089	-	BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor##M58583|CBLN1|869|cerebellin 1 precursor##AK314276|CBLN1|869|cerebellin 1 precursor##NM_004352|CBLN1|869|cerebellin 1 precursor	0.988863	0.925441	CTCF.p2:-9:0.925
chr4	73887457	73887582	reg1001245.p1	11.276	+	AB002364 AB385317 BC130287 BC132735 AF247668 NM_014243	-453028	-	AK290937 NM_001144756 NM_053036 AF236083	-982649	+	AF119815 NM_004885 AK308069 AJ311393	-989950	+	BC101684 BC143642 TSC_hg19_v1_chr4_-_73935431 AK096310 AY957564 AY957565 BC071812 NM_173827	47924	-	TSC_hg19_v1_chr4_-_74088775 BX648035 AK300302	201260	-	TSC_hg19_v1_chr4_-_74124365 AB527094	236840	-	AB002364|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC130287|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC132735|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##AF247668|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##NM_014243|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##AK290937|NPFFR2|10886|neuropeptide FF receptor 2##NM_001144756|NPFFR2|10886|neuropeptide FF receptor 2##NM_053036|NPFFR2|10886|neuropeptide FF receptor 2##AF236083|NPFFR2|10886|neuropeptide FF receptor 2##AF119815|NPFFR2|10886|neuropeptide FF receptor 2##NM_004885|NPFFR2|10886|neuropeptide FF receptor 2##AK308069|NPFFR2|10886|neuropeptide FF receptor 2##AJ311393|NPFFR2|10886|neuropeptide FF receptor 2##BC101684|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC143642|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK096310|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##AY957564|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##AY957565|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC071812|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_173827|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##BX648035|ANKRD17|26057|ankyrin repeat domain 17##AK300302|ANKRD17|26057|ankyrin repeat domain 17	1.990451	0.061101	denovo_WM_7:-29:0.952	denovo_WM_7:-44:0.477	denovo_WM_7:-45:0.519
chr17	57697145	57697258	reg1000410.p2	11.274	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	-156	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	-54214	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	-288183	+	TSC_hg19_v1_chr17_+_57697265 BC054489 BX640615	69	+	TSC_hg19_v1_chr17_+_57697282 BC051800	79	+	TSC_hg19_v1_chr17_+_57697289 AK127134 D21260	100	+	NM_004859|CLTC|1213|clathrin, heavy chain (Hc)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##BC054489|CLTC|1213|clathrin, heavy chain (Hc)##BX640615|CLTC|1213|clathrin, heavy chain (Hc)##BC051800|CLTC|1213|clathrin, heavy chain (Hc)##AK127134|CLTC|1213|clathrin, heavy chain (Hc)##D21260|CLTC|1213|clathrin, heavy chain (Hc)	0.0	0.0	
chr6	40792126	40792262	reg1001550.p1	11.254	+	BC142616 AB033072 NM_020737 AK291474	-237050	-	TSC_hg19_v1_chr6_-_39902202 AK300300 AF034374 AK091306 AK056740 NM_001075098	-889980	-	AB527188 AJ224328 NM_005943	-896809	-	BC035284 NM_173561 TSC_hg19_v1_chr6_-_41006954	214755	-	NM_001010873 BC104440 BC104441 BC137560 BC137565 BC144710 NM_001159726	218152	+	AK223461 AK308197 AK310006 AK313288 NM_006789 BC047767 AF161698 BC069688 BC069764 AK300689	228805	+	BC142616|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AB033072|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##NM_020737|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK291474|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK300300|MOCS1|4337|molybdenum cofactor synthesis 1##AF034374|MOCS1|4337|molybdenum cofactor synthesis 1##AK091306|MOCS1|4337|molybdenum cofactor synthesis 1##AK056740|MOCS1|4337|molybdenum cofactor synthesis 1##NM_001075098|MOCS1|4337|molybdenum cofactor synthesis 1##AJ224328|MOCS1|4337|molybdenum cofactor synthesis 1##NM_005943|MOCS1|4337|molybdenum cofactor synthesis 1##BC035284|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_173561|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_001010873|TSPO2|222642|translocator protein 2##BC104440|TSPO2|222642|translocator protein 2##BC104441|TSPO2|222642|translocator protein 2##BC137560|TSPO2|222642|translocator protein 2##BC137565|TSPO2|222642|translocator protein 2##BC144710|TSPO2|222642|translocator protein 2##NM_001159726|TSPO2|222642|translocator protein 2##AK223461|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK308197|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK310006|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK313288|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##NM_006789|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##BC047767|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AF161698|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##BC069688|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##BC069764|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK300689|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2	1.972572	0.980829	denovo_WM_7:-22:0.805	denovo_WM_7:-37:0.851	CTCF.p2:38:0.981
chr4	68416315	68416471	reg1000942.p2	11.249	+	TSC_hg19_v1_chr4_-_68411282 NM_001812	-5115	-	TSC_hg19_v1_chr4_-_68411224 BC030695 BX648166 BC041117 AK307928 AK308170 M95724	-5185	-	CU688992 TSC_hg19_v1_chr4_-_68411171	-5270	-	TSC_hg19_v1_chr4_+_68424444 AB023483 NM_012108 AK313676 BC014958 AB528919 CU677135	8092	+	TSC_hg19_v1_chr4_-_68566842 AB014773 AB463334 AM392673 EF623993	150425	-	TSC_hg19_v1_chr4_-_68566867 AL832015 AL832458 AK094969 AK314371 BC031637 BC126484 BC126486 NM_018227	150478	-	NM_001812|CENPC1|1060|centromere protein C 1##BC030695|CENPC1|1060|centromere protein C 1##BX648166|CENPC1|1060|centromere protein C 1##BC041117|CENPC1|1060|centromere protein C 1##AK307928|CENPC1|1060|centromere protein C 1##AK308170|CENPC1|1060|centromere protein C 1##M95724|CENPC1|1060|centromere protein C 1##AB023483|STAP1|26228|signal transducing adaptor family member 1##NM_012108|STAP1|26228|signal transducing adaptor family member 1##AK313676|STAP1|26228|signal transducing adaptor family member 1##BC014958|STAP1|26228|signal transducing adaptor family member 1##AB014773|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AM392673|UBA6|55236|ubiquitin-like modifier activating enzyme 6##EF623993|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832015|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832458|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK094969|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK314371|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC031637|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126484|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126486|UBA6|55236|ubiquitin-like modifier activating enzyme 6##NM_018227|UBA6|55236|ubiquitin-like modifier activating enzyme 6	1.913819	0.0	denovo_WM_7:8:0.713	denovo_WM_7:-45:0.905
chr6	97074748	97074865	reg1001320.p2	11.247	+	NM_001170807 NM_020482 AK058175 BC029490 BC021723 AK223539	-64337	+	TSC_hg19_v1_chr6_+_96969734 AB018319 CU690338	-105067	+	TSC_hg19_v1_chr6_+_96969716 NM_015323 BC015377 AK307651 BC036379 BC028608	-105107	+	TSC_hg19_v1_chr6_-_97285392 AB030566 AK313535 AB209347 AK289839 NM_001143957 NM_030784	210425	-	HQ257923 TSC_hg19_v1_chr6_-_97345742 AF060508 AK311850 BC039464	270904	-	TSC_hg19_v1_chr6_-_97345751 BC018802 AF161474	270946	-	NM_001170807|FHL5|9457|four and a half LIM domains 5##NM_020482|FHL5|9457|four and a half LIM domains 5##AK058175|FHL5|9457|four and a half LIM domains 5##BC029490|FHL5|9457|four and a half LIM domains 5##BC021723|FHL5|9457|four and a half LIM domains 5##AK223539|FHL5|9457|four and a half LIM domains 5##AB018319|UFL1|23376|UFM1-specific ligase 1##NM_015323|UFL1|23376|UFM1-specific ligase 1##BC015377|UFL1|23376|UFM1-specific ligase 1##AK307651|UFL1|23376|UFM1-specific ligase 1##BC036379|UFL1|23376|UFM1-specific ligase 1##BC028608|UFL1|23376|UFM1-specific ligase 1##AB030566|GPR63|81491|G protein-coupled receptor 63##AK313535|GPR63|81491|G protein-coupled receptor 63##AB209347|GPR63|81491|G protein-coupled receptor 63##AK289839|GPR63|81491|G protein-coupled receptor 63##NM_001143957|GPR63|81491|G protein-coupled receptor 63##NM_030784|GPR63|81491|G protein-coupled receptor 63##HQ257923|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AF060508|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AK311850|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##BC039464|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##BC018802|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AF161474|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	1.024891	0.986785	CTCF.p2:-1:0.987	denovo_WM_7:-38:0.973
chr2	228250467	228250587	reg1001107.p2	11.240	+	AY358671 BC137256 BC137257 BC035754 TSC_hg19_v1_chr2_-_228244023 AK026453 NM_024795	-6513	-	AF246239 NM_020194	-58300	+	TSC_hg19_v1_chr2_+_228189983 AK026137 BC093024 AF258660	-60483	+	TSC_hg19_v1_chr2_+_228336861 AK097451	86315	+	TSC_hg19_v1_chr2_+_228336877 NM_001135187 NM_001135188 NM_001135189 NM_004504 BC030592 X89478 BC096272 BC096273 BC096274 BC096275 AB527534 CU688928	86479	+	TSC_hg19_v1_chr2_+_228356287 AK295030	105764	+	AY358671|TM4SF20|79853|transmembrane 4 L six family member 20##BC137256|TM4SF20|79853|transmembrane 4 L six family member 20##BC137257|TM4SF20|79853|transmembrane 4 L six family member 20##BC035754|TM4SF20|79853|transmembrane 4 L six family member 20##AK026453|TM4SF20|79853|transmembrane 4 L six family member 20##NM_024795|TM4SF20|79853|transmembrane 4 L six family member 20##AF246239|MFF|56947|mitochondrial fission factor##NM_020194|MFF|56947|mitochondrial fission factor##AK026137|MFF|56947|mitochondrial fission factor##BC093024|MFF|56947|mitochondrial fission factor##AF258660|MFF|56947|mitochondrial fission factor##AK097451|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135187|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135188|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135189|AGFG1|3267|ArfGAP with FG repeats 1##NM_004504|AGFG1|3267|ArfGAP with FG repeats 1##BC030592|AGFG1|3267|ArfGAP with FG repeats 1##X89478|AGFG1|3267|ArfGAP with FG repeats 1##BC096272|AGFG1|3267|ArfGAP with FG repeats 1##BC096273|AGFG1|3267|ArfGAP with FG repeats 1##BC096274|AGFG1|3267|ArfGAP with FG repeats 1##BC096275|AGFG1|3267|ArfGAP with FG repeats 1##AK295030|AGFG1|3267|ArfGAP with FG repeats 1	0.998825	0.0	
chr5	79922066	79922183	reg1001109.p1	11.238	+	NM_001004441	-55821	-	BC137441 BC137442 CR749535 TSC_hg19_v1_chr5_-_79866099	-56032	-	TSC_hg19_v1_chr5_+_79796130 AB055763	-125995	+	TSC_hg19_v1_chr5_-_79946866 NM_001190470	24723	-	NM_002439	28169	+	CU674082 EU145592 V00507 AB590112 DQ892816 DQ896062 J00140 TSC_hg19_v1_chr5_-_79950336 AK312642 BC070280	28202	-	NM_001004441|ANKRD34B|340120|ankyrin repeat domain 34B##BC137441|ANKRD34B|340120|ankyrin repeat domain 34B##BC137442|ANKRD34B|340120|ankyrin repeat domain 34B##CR749535|ANKRD34B|340120|ankyrin repeat domain 34B##NM_001190470|MTRNR2L2|100462981|MT-RNR2-like 2##NM_002439|MSH3|4437|mutS homolog 3 (E. coli)##EU145592|DHFR|1719|dihydrofolate reductase##V00507|DHFR|1719|dihydrofolate reductase##DQ892816|DHFR|1719|dihydrofolate reductase##DQ896062|DHFR|1719|dihydrofolate reductase##J00140|DHFR|1719|dihydrofolate reductase##AK312642|DHFR|1719|dihydrofolate reductase##BC070280|DHFR|1719|dihydrofolate reductase	0.0	0.0	
chr20	58524274	58524394	reg1001036.p2	11.237	+	TSC_hg19_v1_chr20_+_58515434 AK304220 NM_001190827 NM_022106 BC020771 BC054002	-8846	+	TSC_hg19_v1_chr20_-_58515355 BC047502 NM_006242	-9010	-	AK125073 NM_001190826	-15516	+	NM_177980 AK055202	9141	+	BC062570 NM_021810 AK074477	47088	+	TSC_hg19_v1_chr20_+_58630979 AK091179 AX746831 NM_173644	106661	+	AK304220|C20orf177|63939|chromosome 20 open reading frame 177##NM_001190827|C20orf177|63939|chromosome 20 open reading frame 177##NM_022106|C20orf177|63939|chromosome 20 open reading frame 177##BC020771|C20orf177|63939|chromosome 20 open reading frame 177##BC054002|C20orf177|63939|chromosome 20 open reading frame 177##BC047502|PPP1R3D|5509|protein phosphatase 1, regulatory subunit 3D##NM_006242|PPP1R3D|5509|protein phosphatase 1, regulatory subunit 3D##AK125073|C20orf177|63939|chromosome 20 open reading frame 177##NM_001190826|C20orf177|63939|chromosome 20 open reading frame 177##NM_177980|CDH26|60437|cadherin 26##AK055202|CDH26|60437|cadherin 26##BC062570|CDH26|60437|cadherin 26##NM_021810|CDH26|60437|cadherin 26##AK074477|CDH26|60437|cadherin 26##AK091179|C20orf197|284756|chromosome 20 open reading frame 197##NM_173644|C20orf197|284756|chromosome 20 open reading frame 197	0.99033	0.878141	CTCF.p2:16:0.878	denovo_WM_7:-38:0.237	denovo_WM_7:-39:0.237	denovo_WM_7:-40:0.237	denovo_WM_7:-41:0.237
chrX	49064664	49064770	reg1001175.p2	11.236	+	TSC_hg19_v1_chrX_-_49056653 AB464258 CU687900 AK313030 AK094376 AK295524 AK315953 BC064550 NM_003179	-8035	-	TSC_hg19_v1_chrX_+_49047887 CU687901	-16827	+	TSC_hg19_v1_chrX_-_49042854 AK299407	-21863	-	AF067227 JF701915 AF201304 AJ224874 NM_005183	25084	-	NM_014008 TSC_hg19_v1_chrX_+_49091929	27210	+	AK298264 TSC_hg19_v1_chrX_+_49091935 AK296911 AK291976	27231	+	AK313030|SYP|6855|synaptophysin##AK094376|SYP|6855|synaptophysin##AK295524|SYP|6855|synaptophysin##AK315953|SYP|6855|synaptophysin##BC064550|SYP|6855|synaptophysin##NM_003179|SYP|6855|synaptophysin##AK299407|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AF067227|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##JF701915|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AF201304|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AJ224874|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_005183|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_014008|CCDC22|28952|coiled-coil domain containing 22##AK298264|CCDC22|28952|coiled-coil domain containing 22##AK296911|CCDC22|28952|coiled-coil domain containing 22##AK291976|CCDC22|28952|coiled-coil domain containing 22	0.999414	0.0	
chr17	73168034	73168148	reg1001282.p1	11.231	+	AY322169 AY322170 NM_001002032 NM_001002033 NM_016185 AF086910	-17318	-	DQ891909 DQ895094 DQ896835 EU176653 CU674698 AF177862 BC001420 TSC_hg19_v1_chr17_-_73150608 AF266846 AK223321 AK312613	-17539	-	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	-40234	-	DQ893036 DQ896277 AB528658 L76416 TSC_hg19_v1_chr17_-_73179000 AK024823 BC107853 AK225090 BC062713 X99585 AK225263	10880	-	TSC_hg19_v1_chr17_-_73179055 BC071646 AK311837 BC022340 BC068465 BC008450	10957	-	TSC_hg19_v1_chr17_-_73179069 BC070159 BC016775	10989	-	AY322169|HN1|51155|hematological and neurological expressed 1##AY322170|HN1|51155|hematological and neurological expressed 1##NM_001002032|HN1|51155|hematological and neurological expressed 1##NM_001002033|HN1|51155|hematological and neurological expressed 1##NM_016185|HN1|51155|hematological and neurological expressed 1##AF086910|HN1|51155|hematological and neurological expressed 1##DQ891909|HN1|51155|hematological and neurological expressed 1##DQ895094|HN1|51155|hematological and neurological expressed 1##DQ896835|HN1|51155|hematological and neurological expressed 1##EU176653|HN1|51155|hematological and neurological expressed 1##AF177862|HN1|51155|hematological and neurological expressed 1##BC001420|HN1|51155|hematological and neurological expressed 1##AF266846|HN1|51155|hematological and neurological expressed 1##AK223321|HN1|51155|hematological and neurological expressed 1##AK312613|HN1|51155|hematological and neurological expressed 1##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic##DQ893036|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##DQ896277|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##L76416|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK024823|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC107853|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK225090|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC062713|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##X99585|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK225263|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC071646|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK311837|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC022340|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC068465|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC008450|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC070159|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##BC016775|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)	0.99204	0.254292	CTCF.p2:-10:0.254	denovo_WM_7:23:0.837
chr16	81748980	81749134	reg1001495.p1	11.230	+	AY172689 NM_030629	-220104	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	-270224	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-400407	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	63840	+	TSC_hg19_v1_chr16_+_81812901 AB208914	63845	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	63873	+	AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	1.880048	0.0	denovo_WM_7:60:0.863
chr5	131756760	131756922	reg1000974.p1	11.226	+	TSC_hg19_v1_chr5_+_131746621 AK096941 AK309191 AK128882	-10213	+	TSC_hg19_v1_chr5_+_131705407 NM_003060 AF057164 BC012325 AB015050 AK313230 CU680286 DQ893671 DQ895818 AB291606	-51333	+	BX538252 TSC_hg19_v1_chr5_-_131705330	-51542	-	X14454 BC009483 AK298770 AK314025 NM_002198 TSC_hg19_v1_chr5_-_131826466	69640	-	AB591005 BC066279 BC066280 BC066281 BC066282 BC069137 NM_000879 X04688 X12705	122351	-	TSC_hg19_v1_chr5_+_131892670 NM_005732 BC140005 U63139 AK290597 BC108282 AF057299 AF057300 BC062603 BC073850 BC136436	135799	+	AK096941|C5orf56|441108|chromosome 5 open reading frame 56##AK309191|C5orf56|441108|chromosome 5 open reading frame 56##AK128882|C5orf56|441108|chromosome 5 open reading frame 56##NM_003060|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AF057164|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC012325|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB015050|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK313230|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ893671|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ895818|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB291606|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BX538252|LOC553103|553103|uncharacterized LOC553103##X14454|IRF1|3659|interferon regulatory factor 1##BC009483|IRF1|3659|interferon regulatory factor 1##AK298770|IRF1|3659|interferon regulatory factor 1##AK314025|IRF1|3659|interferon regulatory factor 1##NM_002198|IRF1|3659|interferon regulatory factor 1##BC066279|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066280|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066281|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066282|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC069137|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_000879|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X04688|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X12705|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_005732|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC140005|RAD50|10111|RAD50 homolog (S. cerevisiae)##U63139|RAD50|10111|RAD50 homolog (S. cerevisiae)##AK290597|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC108282|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057299|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057300|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC062603|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC073850|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC136436|RAD50|10111|RAD50 homolog (S. cerevisiae)	0.05915	0.0	
chr6	114176109	114176220	reg1000955.p1	11.226	+	AK122906 NM_001013734	-1507633	+	TSC_hg19_v1_chr6_-_112575881 BC066552	-1600269	-	TSC_hg19_v1_chr6_-_112575770 AB210027 X91171 NM_001105206 NM_001105207 NM_001105208 NM_001105209 NM_002290	-1600359	-	TSC_hg19_v1_chr6_+_114178543 AK074526 NM_002356 BC013004 BC028284 BC068059 D10522 M68956 BC089040 EU832331 EU832416 AB463910	2570	+	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	116108	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	116172	-	AK122906|RFPL4B|442247|ret finger protein-like 4B##NM_001013734|RFPL4B|442247|ret finger protein-like 4B##BC066552|LAMA4|3910|laminin, alpha 4##AB210027|LAMA4|3910|laminin, alpha 4##X91171|LAMA4|3910|laminin, alpha 4##NM_001105206|LAMA4|3910|laminin, alpha 4##NM_001105207|LAMA4|3910|laminin, alpha 4##NM_001105208|LAMA4|3910|laminin, alpha 4##NM_001105209|LAMA4|3910|laminin, alpha 4##NM_002290|LAMA4|3910|laminin, alpha 4##AK074526|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##NM_002356|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC013004|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC028284|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC068059|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##D10522|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##M68956|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC089040|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832331|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832416|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2	0.998919	0.017174	denovo_WM_7:42:0.314	denovo_WM_7:43:0.314	denovo_WM_7:44:0.314
chr8	119517527	119517662	reg1001353.p2	11.226	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-393633	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-984552	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-984636	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	116531	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	116613	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	446626	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.998936	0.0	denovo_WM_7:-1:0.303	denovo_WM_7:-2:0.303	denovo_WM_7:-3:0.303
chr19	46396815	46396964	reg1001189.p2	11.223	+	AK223622 TSC_hg19_v1_chr19_-_46389398 AK315060 BC038222 NM_015649 AY278022 BC039002	-7527	-	BC016024 NM_004497 TSC_hg19_v1_chr19_+_46367583 AK223473 AB464526 BT006720 CU677549 L12141	-29274	+	AF049526 TSC_hg19_v1_chr19_-_46366406 Y10931 AB210010 BC030214 AK300252 BX649165 AK130602 NM_004819	-30445	-	TSC_hg19_v1_chr19_-_46405872 BC044311 NM_001012643	9017	-	HQ258065 BC042883 NM_001029861 BC117484 BC117486	21150	-	TSC_hg19_v1_chr19_-_46476556 U70477 AF083898 NM_002516	79717	-	AK223622|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AK315060|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC038222|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##NM_015649|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AY278022|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC039002|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC016024|FOXA3|3171|forkhead box A3##NM_004497|FOXA3|3171|forkhead box A3##AK223473|FOXA3|3171|forkhead box A3##BT006720|FOXA3|3171|forkhead box A3##L12141|FOXA3|3171|forkhead box A3##AF049526|SYMPK|8189|symplekin##Y10931|SYMPK|8189|symplekin##AB210010|SYMPK|8189|symplekin##BC030214|SYMPK|8189|symplekin##AK300252|SYMPK|8189|symplekin##BX649165|SYMPK|8189|symplekin##AK130602|SYMPK|8189|symplekin##NM_004819|SYMPK|8189|symplekin##BC044311|MYPOP|339344|Myb-related transcription factor, partner of profilin##NM_001012643|MYPOP|339344|Myb-related transcription factor, partner of profilin##HQ258065|NANOS2|339345|nanos homolog 2 (Drosophila)##BC042883|NANOS2|339345|nanos homolog 2 (Drosophila)##NM_001029861|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117484|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117486|NANOS2|339345|nanos homolog 2 (Drosophila)##U70477|NOVA2|4858|neuro-oncological ventral antigen 2##AF083898|NOVA2|4858|neuro-oncological ventral antigen 2##NM_002516|NOVA2|4858|neuro-oncological ventral antigen 2	0.998461	0.0	
chr4	39633463	39633625	reg1001506.p1	11.223	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-103918	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-104369	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-104537	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	7012	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	66260	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	345794	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.985426	0.0	denovo_WM_7:0:0.810
chr6	10510849	10510980	reg1001804.p1	11.221	+	AK296737 NM_001042425	-91123	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	-95446	-	FJ794945 M61156 M36711 X52611 TSC_hg19_v1_chr6_-_10415305	-95639	-	AK307373 NM_145649 AK291767 AK310216 AL832714	10694	+	NM_001491	45034	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	75100	+	AK296737|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001042425|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##FJ794945|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M61156|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M36711|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##X52611|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	0.980314	0.0	denovo_WM_7:-32:0.902
chr10	71930514	71930678	reg1001733.p1	11.216	+	TSC_hg19_v1_chr10_-_71930260 AK298591 AK312469 BC003658 AF274026 AF087897 AF217959 AF261717 AY008268 AL136724 NM_001142648 NM_020150	-317	-	TSC_hg19_v1_chr10_-_71906457 BC047424 NM_001040273 NM_173555	-24116	-	TSC_hg19_v1_chr10_-_71906446 BC030242 AK074968 BC111501 BC042629	-24168	-	AF108211 AB590125 AF217186 DQ893597 AB026723 TSC_hg19_v1_chr10_-_71993148 BC107882 AF154065 BC105034 BC105036 AF092439 AF119665 BC001022 BC061581 AK058193 NM_021129	62557	-	NM_022146	112853	-	TSC_hg19_v1_chr10_-_72083680 AL122117	153102	-	AK298591|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AK312469|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC003658|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF274026|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF087897|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF217959|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF261717|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AY008268|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AL136724|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_001142648|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_020150|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC047424|TYSND1|219743|trypsin domain containing 1##NM_001040273|TYSND1|219743|trypsin domain containing 1##NM_173555|TYSND1|219743|trypsin domain containing 1##BC030242|TYSND1|219743|trypsin domain containing 1##AK074968|TYSND1|219743|trypsin domain containing 1##BC111501|TYSND1|219743|trypsin domain containing 1##BC042629|TYSND1|219743|trypsin domain containing 1##AF108211|PPA1|5464|pyrophosphatase (inorganic) 1##AF217186|PPA1|5464|pyrophosphatase (inorganic) 1##DQ893597|PPA1|5464|pyrophosphatase (inorganic) 1##AB026723|PPA1|5464|pyrophosphatase (inorganic) 1##BC107882|PPA1|5464|pyrophosphatase (inorganic) 1##AF154065|PPA1|5464|pyrophosphatase (inorganic) 1##BC105034|PPA1|5464|pyrophosphatase (inorganic) 1##BC105036|PPA1|5464|pyrophosphatase (inorganic) 1##AF092439|PPA1|5464|pyrophosphatase (inorganic) 1##AF119665|PPA1|5464|pyrophosphatase (inorganic) 1##BC001022|PPA1|5464|pyrophosphatase (inorganic) 1##BC061581|PPA1|5464|pyrophosphatase (inorganic) 1##AK058193|PPA1|5464|pyrophosphatase (inorganic) 1##NM_021129|PPA1|5464|pyrophosphatase (inorganic) 1##NM_022146|NPFFR1|64106|neuropeptide FF receptor 1##AL122117|LRRC20|55222|leucine rich repeat containing 20	1.470269	0.0	denovo_WM_7:67:0.343
chr4	27722148	27722309	reg1001606.p2	11.215	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-859688	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-1136548	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-1230243	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	2999771	+	AB006757 TSC_hg19_v1_chr4_+_30722198	2999966	+	TSC_hg19_v1_chr4_+_30722465 AB006756	3000231	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.0	0.0	
chr15	102181471	102181599	reg1001329.p2	11.214	+	TSC_hg19_v1_chr15_-_102030140 NM_002570 NM_138319 NM_138320 NM_138321 NM_138322 NM_138323 NM_138324 NM_138325	-151373	-	TSC_hg19_v1_chr15_-_102029995 M80482 M80482	-151502	-	TSC_hg19_v1_chr15_-_102029982 D87993 D87994 D87995	-151580	-	TSC_hg19_v1_chr15_-_102192580 BC006150 BC008873 AF353992 AK315584 AK297048 AK026257 AK296553 NM_025141 NM_078474	10931	-	TSC_hg19_v1_chr15_-_102264638 BC132671 BC136315 BC143943 AK056653 AX721055 NM_152334	83120	-	BC137002 BC137003 NM_001005326	164376	+	NM_002570|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138319|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138320|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138321|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138322|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138323|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138324|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138325|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##M80482|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##M80482|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87993|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87994|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87995|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##BC006150|TM2D3|80213|TM2 domain containing 3##BC008873|TM2D3|80213|TM2 domain containing 3##AF353992|TM2D3|80213|TM2 domain containing 3##AK315584|TM2D3|80213|TM2 domain containing 3##AK297048|TM2D3|80213|TM2 domain containing 3##AK026257|TM2D3|80213|TM2 domain containing 3##AK296553|TM2D3|80213|TM2 domain containing 3##NM_025141|TM2D3|80213|TM2 domain containing 3##NM_078474|TM2D3|80213|TM2 domain containing 3##BC132671|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC136315|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC143943|TARSL2|123283|threonyl-tRNA synthetase-like 2##AK056653|TARSL2|123283|threonyl-tRNA synthetase-like 2##NM_152334|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC137002|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##BC137003|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##NM_001005326|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6	0.511723	0.018999	denovo_WM_7:-29:0.444
chr20	39676704	39676843	reg1001359.p2	11.214	+	BC136297 TSC_hg19_v1_chr20_+_39657671 U07804 U07806	-19109	+	AK310516 NM_003286 AK225095 AK292943 BC039009 BC004475 TSC_hg19_v1_chr20_+_39657500 AK310508 BC067349 J03250	-19279	+	BC036689 NM_005461 TSC_hg19_v1_chr20_-_39317877	-358896	-	TSC_hg19_v1_chr20_+_39765861 AB210028	89089	+	TSC_hg19_v1_chr20_+_39766146 NM_002660 NM_182811 BC136466 BC144136 M34667	89415	+	TSC_hg19_v1_chr20_-_39766625 BC035080	89835	-	BC136297|TOP1|7150|topoisomerase (DNA) I##U07804|TOP1|7150|topoisomerase (DNA) I##U07806|TOP1|7150|topoisomerase (DNA) I##NM_003286|TOP1|7150|topoisomerase (DNA) I##AK225095|TOP1|7150|topoisomerase (DNA) I##AK292943|TOP1|7150|topoisomerase (DNA) I##BC039009|TOP1|7150|topoisomerase (DNA) I##BC004475|TOP1|7150|topoisomerase (DNA) I##AK310508|TOP1|7150|topoisomerase (DNA) I##BC067349|TOP1|7150|topoisomerase (DNA) I##J03250|TOP1|7150|topoisomerase (DNA) I##BC036689|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_005461|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##AB210028|PLCG1|5335|phospholipase C, gamma 1##NM_002660|PLCG1|5335|phospholipase C, gamma 1##NM_182811|PLCG1|5335|phospholipase C, gamma 1##BC136466|PLCG1|5335|phospholipase C, gamma 1##BC144136|PLCG1|5335|phospholipase C, gamma 1##M34667|PLCG1|5335|phospholipase C, gamma 1	0.994624	0.0	denovo_WM_7:-30:0.239	denovo_WM_7:-31:0.239	denovo_WM_7:-32:0.239	denovo_WM_7:-33:0.239
chr19	35825976	35826101	reg1001247.p1	11.210	+	TSC_hg19_v1_chr19_+_35820089 NM_001185099 NM_001185100 NM_001185101 NM_001771 AK026467 AK225625 AK225694 AK301177 X59350 BC109307	-5947	+	NM_001199216 NM_002361 NM_080600 AK223562 BC093045 TSC_hg19_v1_chr19_+_35783063 BC034042 AK094545 AK222649 AK308976 M29273 AB209170 AK294644 AK222680 BC053347	-42996	+	AF309489 NM_021175 TSC_hg19_v1_chr19_+_35773430 AK096110 BC020612 AF131292 AY358669 AJ277280	-52613	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	16412	+	AK290710 NM_005304 BC035657	23456	+	AB378083 AB464537 BC096198 BC096199 BC096200 BC096201 NM_005306 BC095535	114579	+	NM_001185099|CD22|933|CD22 molecule##NM_001185100|CD22|933|CD22 molecule##NM_001185101|CD22|933|CD22 molecule##NM_001771|CD22|933|CD22 molecule##AK026467|CD22|933|CD22 molecule##AK225625|CD22|933|CD22 molecule##AK225694|CD22|933|CD22 molecule##AK301177|CD22|933|CD22 molecule##X59350|CD22|933|CD22 molecule##BC109307|CD22|933|CD22 molecule##NM_001199216|MAG|4099|myelin associated glycoprotein##NM_002361|MAG|4099|myelin associated glycoprotein##NM_080600|MAG|4099|myelin associated glycoprotein##AK223562|MAG|4099|myelin associated glycoprotein##BC093045|MAG|4099|myelin associated glycoprotein##BC034042|MAG|4099|myelin associated glycoprotein##AK094545|MAG|4099|myelin associated glycoprotein##AK222649|MAG|4099|myelin associated glycoprotein##AK308976|MAG|4099|myelin associated glycoprotein##M29273|MAG|4099|myelin associated glycoprotein##AK294644|MAG|4099|myelin associated glycoprotein##AK222680|MAG|4099|myelin associated glycoprotein##BC053347|MAG|4099|myelin associated glycoprotein##AF309489|HAMP|57817|hepcidin antimicrobial peptide##NM_021175|HAMP|57817|hepcidin antimicrobial peptide##AK096110|HAMP|57817|hepcidin antimicrobial peptide##BC020612|HAMP|57817|hepcidin antimicrobial peptide##AF131292|HAMP|57817|hepcidin antimicrobial peptide##AY358669|HAMP|57817|hepcidin antimicrobial peptide##AJ277280|HAMP|57817|hepcidin antimicrobial peptide##NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3##AB378083|FFAR2|2867|free fatty acid receptor 2##BC096198|FFAR2|2867|free fatty acid receptor 2##BC096199|FFAR2|2867|free fatty acid receptor 2##BC096200|FFAR2|2867|free fatty acid receptor 2##BC096201|FFAR2|2867|free fatty acid receptor 2##NM_005306|FFAR2|2867|free fatty acid receptor 2##BC095535|FFAR2|2867|free fatty acid receptor 2	0.995245	0.0	
chr2	179372285	179372413	reg1000772.p1	11.206	+	TSC_hg19_v1_chr2_+_179345280 AF286162 BC044567 EU832321 EU832406	-26919	+	TSC_hg19_v1_chr2_+_179345234 AK074209	-27117	+	AK314459 NM_019091 TSC_hg19_v1_chr2_+_179345209	-27146	+	TSC_hg19_v1_chr2_+_179387947 AK093733	15611	+	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	287352	-	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	299754	-	AF286162|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##BC044567|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##EU832321|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##EU832406|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK074209|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK314459|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##NM_019091|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK093733|LOC100506866|100506866|uncharacterized LOC100506866##X98114|TTN|7273|titin##X98115|TTN|7273|titin##X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin	1.995198	0.0	denovo_WM_7:44:0.249	denovo_WM_7:45:0.213	denovo_WM_7:64:0.214	denovo_WM_7:65:0.249
chr11	10344648	10344818	reg1001309.p1	11.199	+	TSC_hg19_v1_chr11_+_10326623 AK312893 BC015961 D14874 NM_001124	-18104	+	TSC_hg19_v1_chr11_-_10315755 BC101466 AY234241 NM_030962	-28967	-	AK098060 TSC_hg19_v1_chr11_+_9779882	-564871	+	AK295046 NM_001172431	127134	+	NM_000480 BC126118 TSC_hg19_v1_chr11_+_10472246 AK311436 M84720 AK289998 AK294444 AK313039 HQ258646	127662	+	NM_001025389 D12775 AK308181 M84721 AK299113 TSC_hg19_v1_chr11_+_10476953	132086	+	AK312893|ADM|133|adrenomedullin##BC015961|ADM|133|adrenomedullin##D14874|ADM|133|adrenomedullin##NM_001124|ADM|133|adrenomedullin##BC101466|SBF2|81846|SET binding factor 2##AY234241|SBF2|81846|SET binding factor 2##NM_030962|SBF2|81846|SET binding factor 2##AK098060|LOC283104|283104|uncharacterized LOC283104##AK295046|AMPD3|272|adenosine monophosphate deaminase 3##NM_001172431|AMPD3|272|adenosine monophosphate deaminase 3##NM_000480|AMPD3|272|adenosine monophosphate deaminase 3##BC126118|AMPD3|272|adenosine monophosphate deaminase 3##AK311436|AMPD3|272|adenosine monophosphate deaminase 3##M84720|AMPD3|272|adenosine monophosphate deaminase 3##AK289998|AMPD3|272|adenosine monophosphate deaminase 3##AK294444|AMPD3|272|adenosine monophosphate deaminase 3##AK313039|AMPD3|272|adenosine monophosphate deaminase 3##HQ258646|AMPD3|272|adenosine monophosphate deaminase 3##NM_001025389|AMPD3|272|adenosine monophosphate deaminase 3##D12775|AMPD3|272|adenosine monophosphate deaminase 3##AK308181|AMPD3|272|adenosine monophosphate deaminase 3##M84721|AMPD3|272|adenosine monophosphate deaminase 3##AK299113|AMPD3|272|adenosine monophosphate deaminase 3	0.993756	0.875559	denovo_WM_7:-3:0.248	denovo_WM_7:-4:0.248	denovo_WM_7:-5:0.248	denovo_WM_7:-6:0.248	CTCF.p2:24:0.876
chr1	205254989	205255098	reg1000936.p2	11.197	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-18409	+	AK293734 NM_001242925	-56985	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-57960	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	35800	-	BC036076 TSC_hg19_v1_chr1_-_205313311	58267	-	AK299227 AK001610 NM_018203 AK096590	70997	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.997003	0.0	denovo_WM_7:1:0.985
chr1	212108774	212108921	reg1001581.p1	11.196	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-104717	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-105099	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-259939	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	100043	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	100167	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	100271	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	0.0	0.0	
chr17	30677797	30677931	reg1001200.p2	11.194	+	TSC_hg19_v1_chr17_+_30677187 AK291801 AK309979 BC008023 AB209215 BC000962 AB385067 BT007365 CU675901	-619	+	TSC_hg19_v1_chr17_+_30677178 AK298950 AK226172	-683	+	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	-708	+	TSC_hg19_v1_chr17_+_30771493 AK290602	93625	+	TSC_hg19_v1_chr17_+_30771512 AF001212 NM_002815	93641	+	TSC_hg19_v1_chr17_+_30771521 AK300342	93656	+	AK291801|ZNF207|7756|zinc finger protein 207##AK309979|ZNF207|7756|zinc finger protein 207##BC008023|ZNF207|7756|zinc finger protein 207##AB209215|ZNF207|7756|zinc finger protein 207##BC000962|ZNF207|7756|zinc finger protein 207##BT007365|ZNF207|7756|zinc finger protein 207##AK298950|ZNF207|7756|zinc finger protein 207##AK226172|ZNF207|7756|zinc finger protein 207##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207##AK290602|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11##AF001212|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11##NM_002815|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11##AK300342|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	1.001134	0.0	denovo_WM_7:1:0.296	denovo_WM_7:2:0.296	denovo_WM_7:3:0.296
chrX	46573239	46573405	reg1001505.p1	11.189	+	NM_019886 BC045537 BC023971 AB040711 AB037187 GQ129386 GQ129387	-140044	+	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	-168378	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	-168466	-	AF298591 NM_032591 TSC_hg19_v1_chrX_-_46618577	45207	-	TSC_hg19_v1_chrX_-_46618608 BC094742	45308	-	NM_006915 AJ007590 TSC_hg19_v1_chrX_+_46696391 BC027851	123055	+	NM_019886|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC045537|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC023971|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB040711|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB037187|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129386|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129387|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##AF298591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_032591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##BC094742|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_006915|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AJ007590|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC027851|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)	0.159768	0.0	
chr10	74321806	74321935	reg1001263.p2	11.187	+	AK298347 AK296086 TSC_hg19_v1_chr10_-_74283734 NM_001195519	-38151	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	-206944	-	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	-207192	-	TSC_hg19_v1_chr10_-_74385838 BC016641 AK225695 AL117423 AK225298 AK023318	63964	-	TSC_hg19_v1_chr10_-_74385854 BC004190 BC004216	63999	-	TSC_hg19_v1_chr10_-_74385887 NM_001195518 NM_006077	64047	-	AK298347|MICU1|10367|mitochondrial calcium uptake 1##AK296086|MICU1|10367|mitochondrial calcium uptake 1##NM_001195519|MICU1|10367|mitochondrial calcium uptake 1##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##BC016641|MICU1|10367|mitochondrial calcium uptake 1##AK225695|MICU1|10367|mitochondrial calcium uptake 1##AL117423|MICU1|10367|mitochondrial calcium uptake 1##AK225298|MICU1|10367|mitochondrial calcium uptake 1##AK023318|MICU1|10367|mitochondrial calcium uptake 1##BC004190|MICU1|10367|mitochondrial calcium uptake 1##BC004216|MICU1|10367|mitochondrial calcium uptake 1##NM_001195518|MICU1|10367|mitochondrial calcium uptake 1##NM_006077|MICU1|10367|mitochondrial calcium uptake 1	0.996201	0.0	
chr6	26572926	26573061	reg1001448.p2	11.184	+	TSC_hg19_v1_chr6_+_26538630 NM_006353 AK311841 BC001282	-34363	+	U39576 BC096312 BC096313 BC096314 BC096315 NM_001732	-71522	+	NM_001197234 NM_007049 NM_078476 TSC_hg19_v1_chr6_+_26458182 AK297098 NM_001197233 BC016661 AB209777 U90543	-114803	+	TSC_hg19_v1_chr6_+_26597203 NM_013375 BC066313 BC048812 AB027258 AB463399 CU688138 CU690582 EU446795	24214	+	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	86959	-	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	527572	-	NM_006353|HMGN4|10473|high mobility group nucleosomal binding domain 4##AK311841|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC001282|HMGN4|10473|high mobility group nucleosomal binding domain 4##U39576|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096312|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096313|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096314|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096315|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001732|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001197234|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_007049|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_078476|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AK297098|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001197233|BTN2A1|11120|butyrophilin, subfamily 2, member A1##BC016661|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AB209777|BTN2A1|11120|butyrophilin, subfamily 2, member A1##U90543|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_013375|ABT1|29777|activator of basal transcription 1##BC066313|ABT1|29777|activator of basal transcription 1##BC048812|ABT1|29777|activator of basal transcription 1##AB027258|ABT1|29777|activator of basal transcription 1##EU446795|ABT1|29777|activator of basal transcription 1##NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj	0.989112	0.815929	CTCF.p2:23:0.816
chr7	76073227	76073367	reg1001455.p1	11.183	+	X56777 M60504 NM_001110354	-19036	+	BC113840 AK172783 AJ312755 NM_080744	-34345	-	TSC_hg19_v1_chr7_+_76026838 AK292763 NM_007155 BC113949	-46454	+	NM_001102594 NM_001102595 NM_020892 BC018555 DQ010329 AK293226 TSC_hg19_v1_chr7_+_76091025 AK023924 AB040961 BC008856 BC026059 BC093079	17730	+	AY225124 AY225125 CU679151 DQ893264 DQ896593 NM_001102596	36529	+	NM_030570 NM_182684 AK290096 AY233462 BC004304 AK056760 CU678662	66559	+	X56777|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##M60504|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_001110354|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##BC113840|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AK172783|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AJ312755|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##NM_080744|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AK292763|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_007155|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##BC113949|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_001102594|DTX2|113878|deltex homolog 2 (Drosophila)##NM_001102595|DTX2|113878|deltex homolog 2 (Drosophila)##NM_020892|DTX2|113878|deltex homolog 2 (Drosophila)##BC018555|DTX2|113878|deltex homolog 2 (Drosophila)##DQ010329|DTX2|113878|deltex homolog 2 (Drosophila)##AK293226|DTX2|113878|deltex homolog 2 (Drosophila)##AK023924|DTX2|113878|deltex homolog 2 (Drosophila)##AB040961|DTX2|113878|deltex homolog 2 (Drosophila)##BC008856|DTX2|113878|deltex homolog 2 (Drosophila)##BC026059|DTX2|113878|deltex homolog 2 (Drosophila)##BC093079|DTX2|113878|deltex homolog 2 (Drosophila)##AY225124|DTX2|113878|deltex homolog 2 (Drosophila)##AY225125|DTX2|113878|deltex homolog 2 (Drosophila)##DQ893264|DTX2|113878|deltex homolog 2 (Drosophila)##DQ896593|DTX2|113878|deltex homolog 2 (Drosophila)##NM_001102596|DTX2|113878|deltex homolog 2 (Drosophila)##NM_030570|UPK3B|80761|uroplakin 3B##NM_182684|UPK3B|80761|uroplakin 3B##AK290096|UPK3B|80761|uroplakin 3B##AY233462|UPK3B|80761|uroplakin 3B##BC004304|UPK3B|80761|uroplakin 3B##AK056760|UPK3B|80761|uroplakin 3B	0.994604	0.0	denovo_WM_7:-32:0.203	denovo_WM_7:-35:0.320	denovo_WM_7:-36:0.207
chr4	38525664	38525825	reg1001479.p1	11.179	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-546727	+	AF095288 BC069114 BC069400 NM_006607	-563689	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-632955	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	140082	+	AF289565 TSC_hg19_v1_chr4_-_38666549	140745	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	258855	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.803426	0.0	denovo_WM_7:-5:0.476	denovo_WM_7:-6:0.328
chr18	13586386	13586518	reg1001454.p2	11.177	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-367667	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-595107	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-638388	+	NM_001003674 NM_001003675	25212	+	AF009426 AF009427 NM_004338 NM_181483	34414	+	TSC_hg19_v1_chr18_-_13726549 AK055618	140054	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.99585	0.0	denovo_WM_7:-38:0.815
chr14	54080288	54080413	reg1001335.p1	11.176	+	TSC_hg19_v1_chr14_-_53620035 NM_001160147 NM_001160148 NM_030637	-460300	-	TSC_hg19_v1_chr14_-_53619974 DQ315474 GU376468 BC030703	-460382	-	TSC_hg19_v1_chr14_-_53619887 AK125372	-460477	-	NM_130851	340919	-	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	343183	-	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	783371	+	NM_001160147|DDHD1|80821|DDHD domain containing 1##NM_001160148|DDHD1|80821|DDHD domain containing 1##NM_030637|DDHD1|80821|DDHD domain containing 1##DQ315474|DDHD1|80821|DDHD domain containing 1##GU376468|DDHD1|80821|DDHD domain containing 1##BC030703|DDHD1|80821|DDHD domain containing 1##AK125372|DDHD1|80821|DDHD domain containing 1##NM_130851|BMP4|652|bone morphogenetic protein 4##BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3	0.0	0.0	
chr15	74258016	74258196	reg1001258.p2	11.176	+	TSC_hg19_v1_chr15_+_74218979 DQ893331	-39065	+	TSC_hg19_v1_chr15_+_74218813 BC015090 L21186	-39291	+	TSC_hg19_v1_chr15_+_74218802 BC068542 AK303982 AK314222	-39305	+	AL109664 AF074953 AL109665 CR542089 DQ064605 AB587381 AK300799 AK222665 AK075244 Y16522 BC034379 BC065249 NM_004809 AF111800 AK302051 TSC_hg19_v1_chr15_-_74284672 AF156557	26497	-	TSC_hg19_v1_chr15_-_74286928 AK091531	28828	-	TSC_hg19_v1_chr15_+_74287096 NM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250 X63131 AB209411 S50913 M73778 AF230401 AF230402 AF230403 AF230404 AF230405 AF230406 AF230407 AF230408 AF230409 AF230410 AF230411 BC000080 BC020994	28944	+	DQ893331|LOXL1|4016|lysyl oxidase-like 1##BC015090|LOXL1|4016|lysyl oxidase-like 1##L21186|LOXL1|4016|lysyl oxidase-like 1##BC068542|LOXL1|4016|lysyl oxidase-like 1##AK303982|LOXL1|4016|lysyl oxidase-like 1##AK314222|LOXL1|4016|lysyl oxidase-like 1##AL109664|STOML1|9399|stomatin (EPB72)-like 1##AF074953|STOML1|9399|stomatin (EPB72)-like 1##AL109665|STOML1|9399|stomatin (EPB72)-like 1##CR542089|STOML1|9399|stomatin (EPB72)-like 1##DQ064605|STOML1|9399|stomatin (EPB72)-like 1##AK300799|STOML1|9399|stomatin (EPB72)-like 1##AK222665|STOML1|9399|stomatin (EPB72)-like 1##AK075244|STOML1|9399|stomatin (EPB72)-like 1##Y16522|STOML1|9399|stomatin (EPB72)-like 1##BC034379|STOML1|9399|stomatin (EPB72)-like 1##BC065249|STOML1|9399|stomatin (EPB72)-like 1##NM_004809|STOML1|9399|stomatin (EPB72)-like 1##AF111800|STOML1|9399|stomatin (EPB72)-like 1##AK302051|STOML1|9399|stomatin (EPB72)-like 1##AF156557|STOML1|9399|stomatin (EPB72)-like 1##AK091531|STOML1|9399|stomatin (EPB72)-like 1##NM_002675|PML|5371|promyelocytic leukemia##NM_033238|PML|5371|promyelocytic leukemia##NM_033239|PML|5371|promyelocytic leukemia##NM_033240|PML|5371|promyelocytic leukemia##NM_033244|PML|5371|promyelocytic leukemia##NM_033246|PML|5371|promyelocytic leukemia##NM_033247|PML|5371|promyelocytic leukemia##NM_033249|PML|5371|promyelocytic leukemia##NM_033250|PML|5371|promyelocytic leukemia##X63131|PML|5371|promyelocytic leukemia##AB209411|PML|5371|promyelocytic leukemia##S50913|PML|5371|promyelocytic leukemia##M73778|PML|5371|promyelocytic leukemia##AF230401|PML|5371|promyelocytic leukemia##AF230402|PML|5371|promyelocytic leukemia##AF230403|PML|5371|promyelocytic leukemia##AF230404|PML|5371|promyelocytic leukemia##AF230405|PML|5371|promyelocytic leukemia##AF230406|PML|5371|promyelocytic leukemia##AF230407|PML|5371|promyelocytic leukemia##AF230408|PML|5371|promyelocytic leukemia##AF230409|PML|5371|promyelocytic leukemia##AF230410|PML|5371|promyelocytic leukemia##AF230411|PML|5371|promyelocytic leukemia##BC000080|PML|5371|promyelocytic leukemia##BC020994|PML|5371|promyelocytic leukemia	1.873268	0.0	denovo_WM_7:-13:0.771	denovo_WM_7:-28:0.668	denovo_WM_7:-29:0.229
chr1	40619300	40619435	reg1001475.p2	11.175	+	NM_000310 NM_001142604	-56226	-	AK302232 AK310799 TSC_hg19_v1_chr1_-_40562925	-56440	-	TSC_hg19_v1_chr1_-_40562918 BC008426	-56448	-	TSC_hg19_v1_chr1_+_40627044 BC113666 NM_012421	7672	+	TSC_hg19_v1_chr1_+_40627058 AK307662 U22377 X58480	7690	+	TSC_hg19_v1_chr1_+_40627068 HQ258544	7709	+	NM_000310|PPT1|5538|palmitoyl-protein thioesterase 1##NM_001142604|PPT1|5538|palmitoyl-protein thioesterase 1##AK302232|PPT1|5538|palmitoyl-protein thioesterase 1##AK310799|PPT1|5538|palmitoyl-protein thioesterase 1##BC008426|PPT1|5538|palmitoyl-protein thioesterase 1##BC113666|RLF|6018|rearranged L-myc fusion##NM_012421|RLF|6018|rearranged L-myc fusion##AK307662|RLF|6018|rearranged L-myc fusion##U22377|RLF|6018|rearranged L-myc fusion##HQ258544|RLF|6018|rearranged L-myc fusion	0.9975	0.0	denovo_WM_7:33:0.884
chr20	46127110	46127231	reg1001482.p2	11.175	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-141682	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-150523	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-199601	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	3452	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	3514	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	287582	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.361583	0.0	denovo_WM_7:-54:0.330
chr6_apd_hap1	3112596	3112743	reg1001500.p1	11.174	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.985408	0.801063	CTCF.p2:0:0.801
chr11	86792655	86792789	reg1001308.p1	11.172	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-43744	+	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	-126334	-	TSC_hg19_v1_chr11_-_86666094 AY462097	-126615	-	AK024853 TSC_hg19_v1_chr11_+_87032449	239720	+	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	1115870	-	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	1278145	-	NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##AY462097|FZD4|8322|frizzled family receptor 4##AK024853|TMEM135|65084|transmembrane protein 135##BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C	1.103066	0.0	denovo_WM_7:12:0.928
chr8	101917560	101917736	reg1001526.p1	11.172	+	BC041863 TSC_hg19_v1_chr8_-_101734972	-182682	-	Y00345 TSC_hg19_v1_chr8_-_101734316 AK130523 AK303120 NM_002568	-183331	-	BC015958 BC023217 BC023520 TSC_hg19_v1_chr8_-_101734301	-183353	-	TSC_hg19_v1_chr8_-_101936525 DQ185048	18876	-	TSC_hg19_v1_chr8_-_101962797 NM_001135702	45151	-	TSC_hg19_v1_chr8_-_101963538 NM_001135700 NM_001135701	45814	-	BC041863|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##Y00345|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK130523|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK303120|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##NM_002568|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC015958|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC023217|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC023520|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ185048|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135702|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135700|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135701|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	0.994851	0.0	
chr17	36857164	36857323	reg1001541.p1	11.169	+	TSC_hg19_v1_chr17_-_36831211 NM_001130677	-26058	-	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	-95047	-	BC029278 TSC_hg19_v1_chr17_-_36760969	-96305	-	TSC_hg19_v1_chr17_+_36861421 BC064612	4356	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	4647	+	TSC_hg19_v1_chr17_+_36886574 NM_001136498 AK097047 BC062294	29389	+	NM_001130677|C17orf96|100170841|chromosome 17 open reading frame 96##AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_001136498|CISD3|284106|CDGSH iron sulfur domain 3##AK097047|CISD3|284106|CDGSH iron sulfur domain 3##BC062294|CISD3|284106|CDGSH iron sulfur domain 3	1.976084	0.0	denovo_WM_7:-42:0.968	denovo_WM_7:-57:0.967
chr19	4264943	4265123	reg1001640.p2	11.168	+	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	-17943	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-35513	+	NM_133475	-81683	+	AK056268 NM_020209	13564	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	37371	-	NM_024333 TSC_hg19_v1_chr19_+_4304594 AK315661 AK295523 AK303606 AY032617 BC003124 AK021750 AF316829 DQ891833 DQ895020	39632	+	AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_024333|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK315661|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK295523|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK303606|FSD1|79187|fibronectin type III and SPRY domain containing 1##AY032617|FSD1|79187|fibronectin type III and SPRY domain containing 1##BC003124|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK021750|FSD1|79187|fibronectin type III and SPRY domain containing 1##AF316829|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ891833|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ895020|FSD1|79187|fibronectin type III and SPRY domain containing 1	0.990831	0.0	denovo_WM_7:7:0.991
chr7	23223335	23223515	reg1001278.p2	11.168	+	NM_007342 AK312991 U97198 TSC_hg19_v1_chr7_+_23221673 BC005327 AK300113 BC107583 BT007409 CU675113 AK298183	-1847	+	NM_018846	-77509	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	-77901	+	TSC_hg19_v1_chr7_+_23286300 AK304671 NM_001005340 NM_002510	62871	+	AK297051 TSC_hg19_v1_chr7_+_23286384 X76534	62959	+	AK297055 AK303071 AK312279 TSC_hg19_v1_chr7_+_23286386	62961	+	NM_007342|NUPL2|11097|nucleoporin like 2##AK312991|NUPL2|11097|nucleoporin like 2##U97198|NUPL2|11097|nucleoporin like 2##BC005327|NUPL2|11097|nucleoporin like 2##AK300113|NUPL2|11097|nucleoporin like 2##BC107583|NUPL2|11097|nucleoporin like 2##BT007409|NUPL2|11097|nucleoporin like 2##AK298183|NUPL2|11097|nucleoporin like 2##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##AK304671|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_001005340|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_002510|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297051|GPNMB|10457|glycoprotein (transmembrane) nmb##X76534|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297055|GPNMB|10457|glycoprotein (transmembrane) nmb##AK303071|GPNMB|10457|glycoprotein (transmembrane) nmb##AK312279|GPNMB|10457|glycoprotein (transmembrane) nmb	1.999161	0.0	
chr10	8107802	8107957	reg1001017.p1	11.165	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-10396	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-11104	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-11230	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	2939378	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	2939406	+	AK299548 TSC_hg19_v1_chr10_+_11047339	2939461	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	2.94363	0.0	denovo_WM_7:-40:0.234	denovo_WM_7:-41:0.234	denovo_WM_7:-42:0.234	denovo_WM_7:-43:0.234	denovo_WM_7:90:0.862
chr6	7074315	7074495	reg1000489.p3	11.164	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-349244	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-485455	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-753495	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	33421	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	33630	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	33818	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	1.814917	0.0	denovo_WM_7:8:0.208	denovo_WM_7:-11:0.524
chr12	118815849	118815953	reg1001519.p1	11.163	+	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	-1499	+	TSC_hg19_v1_chr12_-_118810713 NM_016281	-5171	-	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	-5273	-	AK291361 NM_194286 TSC_hg19_v1_chr12_+_119419299 AB058756 BC152471 BC167162 BC167163	603446	+	AF191017 NM_014365 BC002673 TSC_hg19_v1_chr12_+_119616735 AK312501 AF217987 AF133207 AL136936	800778	+	BC040553 NM_178499	956615	+	BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_016281|TAOK3|51347|TAO kinase 3##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##AK291361|SRRM4|84530|serine/arginine repetitive matrix 4##NM_194286|SRRM4|84530|serine/arginine repetitive matrix 4##AB058756|SRRM4|84530|serine/arginine repetitive matrix 4##BC152471|SRRM4|84530|serine/arginine repetitive matrix 4##BC167162|SRRM4|84530|serine/arginine repetitive matrix 4##BC167163|SRRM4|84530|serine/arginine repetitive matrix 4##AF191017|HSPB8|26353|heat shock 22kDa protein 8##NM_014365|HSPB8|26353|heat shock 22kDa protein 8##BC002673|HSPB8|26353|heat shock 22kDa protein 8##AK312501|HSPB8|26353|heat shock 22kDa protein 8##AF217987|HSPB8|26353|heat shock 22kDa protein 8##AF133207|HSPB8|26353|heat shock 22kDa protein 8##AL136936|HSPB8|26353|heat shock 22kDa protein 8##BC040553|CCDC60|160777|coiled-coil domain containing 60##NM_178499|CCDC60|160777|coiled-coil domain containing 60	0.0	0.873908	CTCF.p2:-11:0.874
chr19	13388869	13389001	reg1001399.p3	11.161	+	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-124755	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-127643	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-127796	-	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	228241	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	453644	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	469784	+	BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130	0.997286	0.999668	CTCF.p2:33:1.000
chr7	55584901	55585048	reg1001471.p2	11.161	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	-151402	+	AK095857 NM_018697	-151834	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-498028	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	55066	-	TSC_hg19_v1_chr7_-_55640073 AB097004	55108	-	BC016650 AK314338 TSC_hg19_v1_chr7_-_55640107	55131	-	AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AB097004|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##BC016650|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK314338|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.021411	0.0	
chr8	85919903	85920048	reg1001444.p2	11.159	+	NM_001100391 BC031090	-822871	+	TSC_hg19_v1_chr8_+_85095702 AK095026	-824240	+	AK095560 TSC_hg19_v1_chr8_+_85095510 AK094543 AF495529 AF495530 NM_173848	-824432	+	AK300234 NM_033402 TSC_hg19_v1_chr8_+_86019350	99372	+	TSC_hg19_v1_chr8_+_86019442 BC030701 BC070092 AK056185 AK300874 AK302648 AK307350 AK307636 AK307443	99494	+	NM_001083588 NM_001951 U31556 TSC_hg19_v1_chr8_+_86089622 Z78409 X86097	169646	+	NM_001100391|RALYL|138046|RALY RNA binding protein-like##BC031090|RALYL|138046|RALY RNA binding protein-like##AK095026|RALYL|138046|RALY RNA binding protein-like##AK095560|RALYL|138046|RALY RNA binding protein-like##AK094543|RALYL|138046|RALY RNA binding protein-like##AF495529|RALYL|138046|RALY RNA binding protein-like##AF495530|RALYL|138046|RALY RNA binding protein-like##NM_173848|RALYL|138046|RALY RNA binding protein-like##AK300234|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##NM_033402|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##BC030701|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##BC070092|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##AK056185|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##AK300874|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##AK302648|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##AK307350|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##AK307636|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##AK307443|LRRCC1|85444|leucine rich repeat and coiled-coil domain containing 1##NM_001083588|E2F5|1875|E2F transcription factor 5, p130-binding##NM_001951|E2F5|1875|E2F transcription factor 5, p130-binding##U31556|E2F5|1875|E2F transcription factor 5, p130-binding##Z78409|E2F5|1875|E2F transcription factor 5, p130-binding##X86097|E2F5|1875|E2F transcription factor 5, p130-binding	0.253988	0.0	
chr15	49764156	49764291	reg1001298.p2	11.150	+	NM_002009 BC010956 AK313160 M60828 S81661	-48807	+	TSC_hg19_v1_chr15_+_49462423 NM_002044 AK301361 BC005141 AK098049 AK316440 M84443 BT006901 CU675015 DQ890583 DQ893742	-301760	+	TSC_hg19_v1_chr15_+_49447990 AF461816 AL832745 NM_001001556	-316232	+	BC048125 BC048139 AK057362 NM_152647	148860	-	TSC_hg19_v1_chr15_+_49913254 NM_001144955 NM_020234 BC018028 AF168717 AK290184 BC093073 BC032535	149026	+	AB075819 TSC_hg19_v1_chr15_-_50405521	641293	-	NM_002009|FGF7|2252|fibroblast growth factor 7##BC010956|FGF7|2252|fibroblast growth factor 7##AK313160|FGF7|2252|fibroblast growth factor 7##M60828|FGF7|2252|fibroblast growth factor 7##S81661|FGF7|2252|fibroblast growth factor 7##NM_002044|GALK2|2585|galactokinase 2##AK301361|GALK2|2585|galactokinase 2##BC005141|GALK2|2585|galactokinase 2##AK098049|GALK2|2585|galactokinase 2##AK316440|GALK2|2585|galactokinase 2##M84443|GALK2|2585|galactokinase 2##BT006901|GALK2|2585|galactokinase 2##DQ890583|GALK2|2585|galactokinase 2##DQ893742|GALK2|2585|galactokinase 2##AF461816|GALK2|2585|galactokinase 2##AL832745|GALK2|2585|galactokinase 2##NM_001001556|GALK2|2585|galactokinase 2##BC048125|C15orf33|196951|chromosome 15 open reading frame 33##BC048139|C15orf33|196951|chromosome 15 open reading frame 33##AK057362|C15orf33|196951|chromosome 15 open reading frame 33##NM_152647|C15orf33|196951|chromosome 15 open reading frame 33##NM_001144955|DTWD1|56986|DTW domain containing 1##NM_020234|DTWD1|56986|DTW domain containing 1##BC018028|DTWD1|56986|DTW domain containing 1##AF168717|DTWD1|56986|DTW domain containing 1##AK290184|DTWD1|56986|DTW domain containing 1##BC093073|DTWD1|56986|DTW domain containing 1##BC032535|DTWD1|56986|DTW domain containing 1##AB075819|ATP8B4|79895|ATPase, class I, type 8B, member 4	1.35723	0.0	denovo_WM_7:0:0.276	denovo_WM_7:1:0.711	denovo_WM_7:-41:0.347
chrX	117765608	117765762	reg1001387.p1	11.145	+	AY692226 NM_144658 TSC_hg19_v1_chrX_+_117629874	-135813	+	TSC_hg19_v1_chrX_+_117526665 AL834210	-238998	+	TSC_hg19_v1_chrX_+_117480490 AM393332 AM393787 EU831942 EU832037 AK304432	-285223	+	TSC_hg19_v1_chrX_+_117861562 BC015768 NM_001560 Y10659 U81379 U81380 AK313467 Y09328 BC009960 AB528371 DQ893454 DQ896296 AB209849	95882	+	TSC_hg19_v1_chrX_+_117957786 AK122676 BC036572 BC031241 BC057841 NM_173798 BC018066	192137	+	TSC_hg19_v1_chrX_+_118108580 AK091777 AK290198 AX747177	342895	+	AY692226|DOCK11|139818|dedicator of cytokinesis 11##NM_144658|DOCK11|139818|dedicator of cytokinesis 11##AL834210|WDR44|54521|WD repeat domain 44##AM393332|WDR44|54521|WD repeat domain 44##AM393787|WDR44|54521|WD repeat domain 44##EU831942|WDR44|54521|WD repeat domain 44##EU832037|WDR44|54521|WD repeat domain 44##AK304432|WDR44|54521|WD repeat domain 44##BC015768|IL13RA1|3597|interleukin 13 receptor, alpha 1##NM_001560|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y10659|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81379|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81380|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK313467|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y09328|IL13RA1|3597|interleukin 13 receptor, alpha 1##BC009960|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ893454|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ896296|IL13RA1|3597|interleukin 13 receptor, alpha 1##AB209849|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK122676|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC036572|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC031241|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC057841|ZCCHC12|170261|zinc finger, CCHC domain containing 12##NM_173798|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC018066|ZCCHC12|170261|zinc finger, CCHC domain containing 12##AK091777|LONRF3|79836|LON peptidase N-terminal domain and ring finger 3##AK290198|LONRF3|79836|LON peptidase N-terminal domain and ring finger 3	0.0	0.0	
chr2	114198362	114198500	reg1001736.p1	11.144	+	AK290072 NM_172003 AK303653 AY343910 TSC_hg19_v1_chr2_+_114195398 AY320414 BC120991 BC120992 AK225251 AF452722	-3092	+	S77904 S77905 S77906 X69699 BC001060 AK292191 AK309154 AK225538 NM_003466 NM_013952 NM_013953 NM_013992 TSC_hg19_v1_chr2_-_114036499	-161938	-	TSC_hg19_v1_chr2_+_113993123 AK056052 AK307781 BX537688 AK056355 AK130275	-205161	+	AK122950 NM_012184 BC136428 AY344639 AF452723	58305	+	AL137714 AK302089 AK308574 TSC_hg19_v1_chr2_+_114341674	143186	+	AK292759 AK309926 TSC_hg19_v1_chr2_+_114341689	143258	+	AK290072|CBWD2|150472|COBW domain containing 2##NM_172003|CBWD2|150472|COBW domain containing 2##AK303653|CBWD2|150472|COBW domain containing 2##AY343910|CBWD2|150472|COBW domain containing 2##AY320414|CBWD1|55871|COBW domain containing 1##BC120991|CBWD2|150472|COBW domain containing 2##BC120992|CBWD2|150472|COBW domain containing 2##AK225251|CBWD2|150472|COBW domain containing 2##AF452722|CBWD2|150472|COBW domain containing 2##S77904|PAX8|7849|paired box 8##S77905|PAX8|7849|paired box 8##S77906|PAX8|7849|paired box 8##X69699|PAX8|7849|paired box 8##BC001060|PAX8|7849|paired box 8##AK292191|PAX8|7849|paired box 8##AK309154|PAX8|7849|paired box 8##AK225538|PAX8|7849|paired box 8##NM_003466|PAX8|7849|paired box 8##NM_013952|PAX8|7849|paired box 8##NM_013953|PAX8|7849|paired box 8##NM_013992|PAX8|7849|paired box 8##AK056052|LOC654433|654433|uncharacterized LOC654433##AK307781|LOC654433|654433|uncharacterized LOC654433##BX537688|LOC654433|654433|uncharacterized LOC654433##AK056355|LOC654433|654433|uncharacterized LOC654433##AK130275|LOC654433|654433|uncharacterized LOC654433##AK122950|FOXD4L1|200350|forkhead box D4-like 1##NM_012184|FOXD4L1|200350|forkhead box D4-like 1##BC136428|FOXD4L1|200350|forkhead box D4-like 1##AY344639|FOXD4L1|200350|forkhead box D4-like 1##AF452723|FOXD4L1|200350|forkhead box D4-like 1##AL137714|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK302089|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK308574|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK292759|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK309926|WASH7P|653635|WAS protein family homolog 7 pseudogene	0.82941	0.217527	CTCF.p2:27:0.218	denovo_WM_7:-58:0.829
chr15	76604173	76604313	reg1001255.p2	11.143	+	TSC_hg19_v1_chr15_-_76603808 AK292979 NM_000126 NM_001127716	-429	-	TSC_hg19_v1_chr15_-_76603791 BC029995	-446	-	TSC_hg19_v1_chr15_-_76603771 AK300044 BC015526 D28380	-478	-	TSC_hg19_v1_chr15_+_76629141 AB593133 AK001022 BC012136 NM_145805 BC011967 EU446846	24919	+	BX647285 NM_001145923	550041	-	AF242528 NM_020843	571960	-	AK292979|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##NM_000126|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##NM_001127716|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC029995|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##AK300044|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC015526|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##AB593133|ISL2|64843|ISL LIM homeobox 2##AK001022|ISL2|64843|ISL LIM homeobox 2##BC012136|ISL2|64843|ISL LIM homeobox 2##NM_145805|ISL2|64843|ISL LIM homeobox 2##BC011967|ISL2|64843|ISL LIM homeobox 2##EU446846|ISL2|64843|ISL LIM homeobox 2##BX647285|SCAPER|49855|S-phase cyclin A-associated protein in the ER##NM_001145923|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AF242528|SCAPER|49855|S-phase cyclin A-associated protein in the ER##NM_020843|SCAPER|49855|S-phase cyclin A-associated protein in the ER	0.998461	0.0	
chr4	160091167	160091317	reg1001322.p1	11.141	+	AK058100 NM_152543	-134910	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-400957	+	TSC_hg19_v1_chr4_+_159690177 NM_020840	-401064	+	AK294459 NM_014247	97755	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	2993909	-	TSC_hg19_v1_chr4_-_164088002 AK097352	3996750	-	AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##NM_020840|FNIP2|57600|folliculin interacting protein 2##AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.987777	0.0	denovo_WM_7:-1:0.456	denovo_WM_7:-2:0.532
chr14	93143787	93143967	reg1001287.p2	11.138	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-25054	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-25241	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-163918	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	71082	-	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	116809	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	245567	+	AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	0.753843	0.0	denovo_WM_7:89:0.568
chr20	52532368	52532512	reg1001456.p1	11.136	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-321641	-	AF041259 NM_006526	-332805	-	AK302570 NM_001193421	-730619	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	154622	-	AK315220 NM_003657	154863	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	258080	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.990712	0.543174	denovo_WM_7:-27:0.869	CTCF.p2:34:0.543
chr17	38479108	38479251	reg1000971.p2	11.135	+	TSC_hg19_v1_chr17_+_38474548 AK130192	-4632	+	TSC_hg19_v1_chr17_+_38474521 AK292205 FJ487576	-4655	+	NM_001145301 NM_001145302 TSC_hg19_v1_chr17_+_38474476	-4699	+	NM_001024809	19091	+	TSC_hg19_v1_chr17_-_38520951 AK125254 NM_152219	41767	-	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	94945	-	AK130192|RARA|5914|retinoic acid receptor, alpha##AK292205|RARA|5914|retinoic acid receptor, alpha##FJ487576|RARA|5914|retinoic acid receptor, alpha##NM_001145301|RARA|5914|retinoic acid receptor, alpha##NM_001145302|RARA|5914|retinoic acid receptor, alpha##NM_001024809|RARA|5914|retinoic acid receptor, alpha##AK125254|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_152219|GJD3|125111|gap junction protein, delta 3, 31.9kDa##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa	0.0	0.0	
chr1	197151230	197151348	reg1001468.p2	11.133	+	AF509326 AY099892 AY367065 AY971955 AY971956 AY971957 BC015396 TSC_hg19_v1_chr1_-_197115800 AK226178 AK125107 NM_001206846 NM_018136	-35595	-	M14057 AB527321 AK290560 NM_001994	-114916	-	AK314026 NM_030787 BC026282 AF295327 BC111773 AB590626	-204560	+	BC132818 BC136600 AK128549 AY163816 NM_194314	18364	-	NM_001193640 NM_201253 AK299368 AK289733 AK307844 AB208923 AF154671 AY043324 AY043325 BC136271 BC143726 AJ748821	86148	+	AK000061 TSC_hg19_v1_chr1_-_197552357	401043	-	AF509326|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY099892|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY367065|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971955|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971956|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971957|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##BC015396|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK226178|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK125107|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_001206846|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_018136|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##M14057|F13B|2165|coagulation factor XIII, B polypeptide##AK290560|F13B|2165|coagulation factor XIII, B polypeptide##NM_001994|F13B|2165|coagulation factor XIII, B polypeptide##AK314026|CFHR5|81494|complement factor H-related 5##NM_030787|CFHR5|81494|complement factor H-related 5##BC026282|CFHR5|81494|complement factor H-related 5##AF295327|CFHR5|81494|complement factor H-related 5##BC111773|CFHR5|81494|complement factor H-related 5##BC132818|ZBTB41|360023|zinc finger and BTB domain containing 41##BC136600|ZBTB41|360023|zinc finger and BTB domain containing 41##AK128549|ZBTB41|360023|zinc finger and BTB domain containing 41##AY163816|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_194314|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_001193640|CRB1|23418|crumbs homolog 1 (Drosophila)##NM_201253|CRB1|23418|crumbs homolog 1 (Drosophila)##AK299368|CRB1|23418|crumbs homolog 1 (Drosophila)##AK289733|CRB1|23418|crumbs homolog 1 (Drosophila)##AK307844|CRB1|23418|crumbs homolog 1 (Drosophila)##AB208923|CRB1|23418|crumbs homolog 1 (Drosophila)##AF154671|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043324|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043325|CRB1|23418|crumbs homolog 1 (Drosophila)##BC136271|CRB1|23418|crumbs homolog 1 (Drosophila)##BC143726|CRB1|23418|crumbs homolog 1 (Drosophila)##AJ748821|CRB1|23418|crumbs homolog 1 (Drosophila)##AK000061|DENND1B|163486|DENN/MADD domain containing 1B	0.0	0.0	
chr1	2480197	2480363	reg1001568.p3	11.133	+	BC087840 DQ272660 NM_001010926	-18597	-	TSC_hg19_v1_chr1_-_2458040 AL442072 BC043496 AK001644 AK223546 AK303127 AK309860 NM_018216 AK295301	-22216	-	DQ176850 NM_014638 BC144620	-72523	+	AK300515 NM_003820 U70321 AK303468 BC029848 BC002794 BC018882 U81232 AF153978 AK310076 AB208808 AY358879 CU678202 AB590572 DQ893000 DQ896755 AF373877 AF373878 CR456909	7673	+	TSC_hg19_v1_chr1_+_2518261 NM_001195736 NM_001195737 NM_001195738 NM_001195740 NM_001195741 NM_152371 AK303504 AK291908 AK298926 AK075273 AF425266 BC022547 AK057027 AK308034 AK316243	37908	+	TSC_hg19_v1_chr1_+_2518534 AK094901	38234	+	BC087840|HES5|388585|hairy and enhancer of split 5 (Drosophila)##DQ272660|HES5|388585|hairy and enhancer of split 5 (Drosophila)##NM_001010926|HES5|388585|hairy and enhancer of split 5 (Drosophila)##AL442072|PANK4|55229|pantothenate kinase 4##BC043496|PANK4|55229|pantothenate kinase 4##AK001644|PANK4|55229|pantothenate kinase 4##AK223546|PANK4|55229|pantothenate kinase 4##AK303127|PANK4|55229|pantothenate kinase 4##AK309860|PANK4|55229|pantothenate kinase 4##NM_018216|PANK4|55229|pantothenate kinase 4##AK295301|PANK4|55229|pantothenate kinase 4##DQ176850|PLCH2|9651|phospholipase C, eta 2##NM_014638|PLCH2|9651|phospholipase C, eta 2##BC144620|PLCH2|9651|phospholipase C, eta 2##AK300515|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##NM_003820|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U70321|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK303468|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC029848|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC002794|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC018882|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U81232|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF153978|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK310076|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AB208808|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AY358879|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ893000|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ896755|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373877|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373878|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##CR456909|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##NM_001195736|FAM213B|127281|family with sequence similarity 213, member B##NM_001195737|FAM213B|127281|family with sequence similarity 213, member B##NM_001195738|FAM213B|127281|family with sequence similarity 213, member B##NM_001195740|FAM213B|127281|family with sequence similarity 213, member B##NM_001195741|FAM213B|127281|family with sequence similarity 213, member B##NM_152371|FAM213B|127281|family with sequence similarity 213, member B##AK303504|FAM213B|127281|family with sequence similarity 213, member B##AK291908|FAM213B|127281|family with sequence similarity 213, member B##AK298926|FAM213B|127281|family with sequence similarity 213, member B##AK075273|FAM213B|127281|family with sequence similarity 213, member B##AF425266|FAM213B|127281|family with sequence similarity 213, member B##BC022547|FAM213B|127281|family with sequence similarity 213, member B##AK057027|FAM213B|127281|family with sequence similarity 213, member B##AK308034|FAM213B|127281|family with sequence similarity 213, member B##AK316243|FAM213B|127281|family with sequence similarity 213, member B##AK094901|FAM213B|127281|family with sequence similarity 213, member B	1.049528	0.0	denovo_WM_7:-24:0.535	denovo_WM_7:-25:0.352
chr15	26179224	26179345	reg1001511.p1	11.133	+	AB051358 TSC_hg19_v1_chr15_-_26108932	-70384	-	TSC_hg19_v1_chr15_-_26108463 EU831492 EU831579 NM_024490 BC052251	-70931	-	TSC_hg19_v1_chr15_-_25684163 NM_000462 NM_130839 AF002224	-495106	-	AK295167 NM_001191321 TSC_hg19_v1_chr15_-_26874238 BC038837	694996	-	AK302822 NM_001191320	782627	-	AB529097 DQ891086 EU176555 TSC_hg19_v1_chr15_-_27018110	838825	-	AB051358|ATP10A|57194|ATPase, class V, type 10A##EU831492|ATP10A|57194|ATPase, class V, type 10A##EU831579|ATP10A|57194|ATPase, class V, type 10A##NM_024490|ATP10A|57194|ATPase, class V, type 10A##BC052251|ATP10A|57194|ATPase, class V, type 10A##NM_000462|UBE3A|7337|ubiquitin protein ligase E3A##NM_130839|UBE3A|7337|ubiquitin protein ligase E3A##AF002224|UBE3A|7337|ubiquitin protein ligase E3A##AK295167|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3##NM_001191321|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3##AK302822|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3##NM_001191320|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3##DQ891086|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3##EU176555|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3	1.838736	0.223937	CTCF.p2:-18:0.224	denovo_WM_7:27:0.759	denovo_WM_7:46:0.229	denovo_WM_7:47:0.229	denovo_WM_7:48:0.245	denovo_WM_7:49:0.245
chr11	616107	616226	reg1001059.p1	11.131	+	NM_001572 NM_004029 TSC_hg19_v1_chr11_-_616001	-165	-	U53830 U53831 U53832 U73036 TSC_hg19_v1_chr11_-_615951 AK303752	-230	-	AF076494 NM_004031	-478	-	AF276242 AF301909 TSC_hg19_v1_chr11_-_624945 AY358368 BC038405 AK000226 AK300991 AK308040 AK309157 AK000384 NM_001171968 NM_021924 NM_031264 AF258678 AF258679	8868	-	NM_021920	11006	-	TSC_hg19_v1_chr11_+_637268 EU432112 L12398 NM_000797 S76942	21120	+	NM_001572|IRF7|3665|interferon regulatory factor 7##NM_004029|IRF7|3665|interferon regulatory factor 7##U53830|IRF7|3665|interferon regulatory factor 7##U53831|IRF7|3665|interferon regulatory factor 7##U53832|IRF7|3665|interferon regulatory factor 7##U73036|IRF7|3665|interferon regulatory factor 7##AK303752|IRF7|3665|interferon regulatory factor 7##AF076494|IRF7|3665|interferon regulatory factor 7##NM_004031|IRF7|3665|interferon regulatory factor 7##AF276242|CDHR5|53841|cadherin-related family member 5##AF301909|CDHR5|53841|cadherin-related family member 5##AY358368|CDHR5|53841|cadherin-related family member 5##BC038405|CDHR5|53841|cadherin-related family member 5##AK000226|CDHR5|53841|cadherin-related family member 5##AK300991|CDHR5|53841|cadherin-related family member 5##AK308040|CDHR5|53841|cadherin-related family member 5##AK309157|CDHR5|53841|cadherin-related family member 5##AK000384|CDHR5|53841|cadherin-related family member 5##NM_001171968|CDHR5|53841|cadherin-related family member 5##NM_021924|CDHR5|53841|cadherin-related family member 5##NM_031264|CDHR5|53841|cadherin-related family member 5##AF258678|CDHR5|53841|cadherin-related family member 5##AF258679|CDHR5|53841|cadherin-related family member 5##NM_021920|SCT|6343|secretin##EU432112|DRD4|1815|dopamine receptor D4##L12398|DRD4|1815|dopamine receptor D4##NM_000797|DRD4|1815|dopamine receptor D4##S76942|DRD4|1815|dopamine receptor D4	0.581526	0.0	denovo_WM_7:4:0.582
chr19	4247356	4247493	reg1001594.p2	11.130	+	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	-334	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-17904	+	NM_133475	-64074	+	AK056268 NM_020209	31173	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	54980	-	NM_024333 TSC_hg19_v1_chr19_+_4304594 AK315661 AK295523 AK303606 AY032617 BC003124 AK021750 AF316829 DQ891833 DQ895020	57241	+	AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_024333|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK315661|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK295523|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK303606|FSD1|79187|fibronectin type III and SPRY domain containing 1##AY032617|FSD1|79187|fibronectin type III and SPRY domain containing 1##BC003124|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK021750|FSD1|79187|fibronectin type III and SPRY domain containing 1##AF316829|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ891833|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ895020|FSD1|79187|fibronectin type III and SPRY domain containing 1	0.0	0.0	
chr22	41339640	41339789	reg1001313.p1	11.130	+	AB528124 CU013018 CU013306 CR456468 BC112135 AF085232 NM_145174	-81651	-	TSC_hg19_v1_chr22_+_41253101 NM_001204827 NM_022098 AK301635 BX648018 BC037424 AL365514 BC005331 BC001681 BC004989 AX721172 AK313770 AL834310 CR456442 BC001208 BC023654 BC045166 BC053556 BC011632 AB527238 CR457396 CU013040 CU013328 CU674830	-86594	+	TSC_hg19_v1_chr22_-_41252691 NM_003932	-87024	-	TSC_hg19_v1_chr22_+_41347364 NM_014248	7634	+	TSC_hg19_v1_chr22_+_41347389 BC017370 CR456560 AK315722 AF140598 BC001466 AB590096 AF142059 CU013160 CU013448 CU674722 AF085906 AY099360	7692	+	TSC_hg19_v1_chr22_+_41487787 U01877	148076	+	CU013018|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CU013306|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CR456468|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##BC112135|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##AF085232|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_145174|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_001204827|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_022098|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK301635|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BX648018|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC037424|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL365514|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC005331|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001681|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC004989|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK313770|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL834310|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR456442|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001208|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC023654|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC045166|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC053556|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC011632|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR457396|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_003932|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##NM_014248|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC017370|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CR456560|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK315722|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF140598|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC001466|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF142059|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013160|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013448|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF085906|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AY099360|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##U01877|EP300|2033|E1A binding protein p300	1.990678	0.0	denovo_WM_7:37:0.783	denovo_WM_7:-70:0.457	denovo_WM_7:-71:0.457
chr5	180287662	180287803	reg1001394.p2	11.127	+	TSC_hg19_v1_chr5_+_180258018 BC047586	-29727	+	TSC_hg19_v1_chr5_+_180257959 AK308536	-29780	+	AK057194 AK124428 TSC_hg19_v1_chr5_-_180242542	-45190	-	AK295714 TSC_hg19_v1_chr5_-_180288277 AK303450 BC029573 AK091376 AX746945 NM_001172638 NM_152283	559	-	NM_001040462 NM_001159707 NM_001159708 NM_001159709 NM_024850 AK296597 AY358523 AK025111 AK225213 BC119696 BC119697	38442	+	AK298687 NM_001159710 AK309639 AK308012	48838	+	BC047586|LOC729678|729678|uncharacterized LOC729678##AK057194|MGAT1|4245|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK295714|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK303450|ZFP62|643836|zinc finger protein 62 homolog (mouse)##BC029573|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK091376|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001172638|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_152283|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001040462|BTNL8|79908|butyrophilin-like 8##NM_001159707|BTNL8|79908|butyrophilin-like 8##NM_001159708|BTNL8|79908|butyrophilin-like 8##NM_001159709|BTNL8|79908|butyrophilin-like 8##NM_024850|BTNL8|79908|butyrophilin-like 8##AK296597|BTNL8|79908|butyrophilin-like 8##AY358523|BTNL8|79908|butyrophilin-like 8##AK025111|BTNL8|79908|butyrophilin-like 8##AK225213|BTNL8|79908|butyrophilin-like 8##BC119696|BTNL8|79908|butyrophilin-like 8##BC119697|BTNL8|79908|butyrophilin-like 8##AK298687|BTNL8|79908|butyrophilin-like 8##NM_001159710|BTNL8|79908|butyrophilin-like 8##AK309639|BTNL8|79908|butyrophilin-like 8##AK308012|BTNL8|79908|butyrophilin-like 8	0.992646	0.02521	denovo_WM_7:-33:0.783
chr1	38285613	38285739	reg1001400.p1	11.125	+	AY517499 TSC_hg19_v1_chr1_+_38273967 BC107856 BC057819 AK127381 BC102041 BC127187 BC127188 BC141938	-11766	+	TSC_hg19_v1_chr1_-_38273855 AY172561 NM_024640 BC080186	-11805	-	TSC_hg19_v1_chr1_-_38273849 BC067857	-11828	-	TSC_hg19_v1_chr1_-_38325265 X78710 AK225923 AK298751 AK309584 AK314233 BC014454 NM_005955	39582	-	TSC_hg19_v1_chr1_-_38397424 AK022846	111759	-	TSC_hg19_v1_chr1_-_38412689 AL833055 BC058932	127006	-	AY517499|C1orf122|127687|chromosome 1 open reading frame 122##BC107856|C1orf122|127687|chromosome 1 open reading frame 122##BC057819|C1orf122|127687|chromosome 1 open reading frame 122##AK127381|C1orf122|127687|chromosome 1 open reading frame 122##BC102041|C1orf122|127687|chromosome 1 open reading frame 122##BC127187|C1orf122|127687|chromosome 1 open reading frame 122##BC127188|C1orf122|127687|chromosome 1 open reading frame 122##AY172561|YRDC|79693|yrdC domain containing (E. coli)##NM_024640|YRDC|79693|yrdC domain containing (E. coli)##BC080186|YRDC|79693|yrdC domain containing (E. coli)##BC067857|YRDC|79693|yrdC domain containing (E. coli)##X78710|MTF1|4520|metal-regulatory transcription factor 1##AK225923|MTF1|4520|metal-regulatory transcription factor 1##AK298751|MTF1|4520|metal-regulatory transcription factor 1##AK309584|MTF1|4520|metal-regulatory transcription factor 1##AK314233|MTF1|4520|metal-regulatory transcription factor 1##BC014454|MTF1|4520|metal-regulatory transcription factor 1##NM_005955|MTF1|4520|metal-regulatory transcription factor 1##AK022846|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##AL833055|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC058932|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa	1.995323	0.0	denovo_WM_7:-25:0.309	denovo_WM_7:-26:0.247	denovo_WM_7:-43:0.259	denovo_WM_7:-44:0.321
chr18	70320395	70320550	reg1001376.p1	11.124	+	NM_182511 TSC_hg19_v1_chr18_-_70211738	-108742	-	BC110843 BC035789 TSC_hg19_v1_chr18_-_70210781 AK291364	-109697	-	TSC_hg19_v1_chr18_+_67956280 BC020082	-2364211	+	AF448839 NM_138999	212461	-	AF448838 BC050329 NM_001201465 NM_138966	214337	-	BC029579 NM_152676 TSC_hg19_v1_chr18_-_71815087 AK094215 NM_001142958	1494555	-	NM_182511|CBLN2|147381|cerebellin 2 precursor##BC110843|CBLN2|147381|cerebellin 2 precursor##BC035789|CBLN2|147381|cerebellin 2 precursor##AK291364|CBLN2|147381|cerebellin 2 precursor##BC020082|SOCS6|9306|suppressor of cytokine signaling 6##AF448839|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##NM_138999|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##AF448838|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##BC050329|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##NM_001201465|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##NM_138966|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##BC029579|FBXO15|201456|F-box protein 15##NM_152676|FBXO15|201456|F-box protein 15##AK094215|FBXO15|201456|F-box protein 15##NM_001142958|FBXO15|201456|F-box protein 15	1.340291	0.160223	denovo_WM_7:18:0.354	denovo_WM_7:33:0.257
chrX	19905680	19905788	reg1000572.p1	11.124	+	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	-30	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	-102	-	TSC_hg19_v1_chrX_-_19905450 AY542305	-271	-	NM_198279	82647	-	AY092822 TSC_hg19_v1_chrX_-_20009180	103374	-	AK294788 NM_001168467	229018	-	AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_198279|CXorf23|256643|chromosome X open reading frame 23##AY092822|LOC729609|729609|uncharacterized LOC729609##AK294788|MAP7D2|256714|MAP7 domain containing 2##NM_001168467|MAP7D2|256714|MAP7 domain containing 2	2.974822	0.0	denovo_WM_7:-5:0.272	denovo_WM_7:-6:0.407	denovo_WM_7:9:0.224	denovo_WM_7:10:0.249	denovo_WM_7:11:0.221	denovo_WM_7:26:0.277	denovo_WM_7:27:0.413
chr18	60173565	60173716	reg1001552.p2	11.123	+	AB209762 AF018253 NM_003839 AB527346	-181090	+	TSC_hg19_v1_chr18_+_59855176 AB384606	-318430	+	TSC_hg19_v1_chr18_+_59854540 BX648481	-319052	+	NM_017742 TSC_hg19_v1_chr18_+_60190696 BC006340	17114	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	209024	+	TSC_hg19_v1_chr18_+_60383911 AB011178	210286	+	AB209762|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##AF018253|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_003839|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##BX648481|KIAA1468|57614|KIAA1468##NM_017742|ZCCHC2|54877|zinc finger, CCHC domain containing 2##BC006340|ZCCHC2|54877|zinc finger, CCHC domain containing 2##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1	0.999511	0.0	denovo_WM_7:-10:0.964
chr6	42192193	42192373	reg1001125.p2	11.116	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-6666	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-6683	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-6686	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	227540	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	339467	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	339494	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.95999	0.0	denovo_WM_7:-13:0.861
chr2	70335068	70335206	reg1001235.p2	11.115	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-20139	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-20220	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-20310	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	82984	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	140582	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	150113	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.994087	0.0	denovo_WM_7:-7:0.814
chr1	172350070	172350222	reg1001324.p1	11.114	+	TSC_hg19_v1_chr1_+_171810630 NM_001136127 NM_015569 AK056279 AL136712 AB020627 AK308992 AK307806 BC064546 AB385386 AM393667 AM393846	-539443	+	TSC_hg19_v1_chr1_+_171750834 AB242174 AF132936 AL049669 AK027552 AB242175	-599308	+	TSC_hg19_v1_chr1_+_171750809 AK291740 AK027621	-599332	+	AL035295 NM_139240 BC038410	39682	+	TSC_hg19_v1_chr1_-_172413202 BC006539	63042	-	TSC_hg19_v1_chr1_-_172413207 AK308201	63061	-	NM_001136127|DNM3|26052|dynamin 3##NM_015569|DNM3|26052|dynamin 3##AK056279|DNM3|26052|dynamin 3##AL136712|DNM3|26052|dynamin 3##AB020627|DNM3|26052|dynamin 3##AK308992|DNM3|26052|dynamin 3##AK307806|DNM3|26052|dynamin 3##BC064546|DNM3|26052|dynamin 3##AM393667|DNM3|26052|dynamin 3##AM393846|DNM3|26052|dynamin 3##AB242174|METTL13|51603|methyltransferase like 13##AF132936|METTL13|51603|methyltransferase like 13##AL049669|METTL13|51603|methyltransferase like 13##AK027552|METTL13|51603|methyltransferase like 13##AB242175|METTL13|51603|methyltransferase like 13##AK291740|METTL13|51603|methyltransferase like 13##AK027621|METTL13|51603|methyltransferase like 13##AL035295|C1orf105|92346|chromosome 1 open reading frame 105##NM_139240|C1orf105|92346|chromosome 1 open reading frame 105##BC038410|C1orf105|92346|chromosome 1 open reading frame 105##BC006539|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##AK308201|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C	1.079599	0.0	denovo_WM_7:-17:0.494
chr18	76917339	76917499	reg1001413.p3	11.114	+	TSC_hg19_v1_chr18_+_76856487 CU690988	-60920	+	TSC_hg19_v1_chr18_+_76829420 BC053561	-87970	+	BC036473 TSC_hg19_v1_chr18_+_76829395 AK308291 BC022535 BC125219 BC125220 NM_198531 AK093704 AX748269 AK295981	-88020	+	TSC_hg19_v1_chr18_+_77155750 NM_006162 NM_172388 NM_172390 U80917	238394	+	TSC_hg19_v1_chr18_+_77155929 AK292641	238514	+	U80919 TSC_hg19_v1_chr18_+_77155946	238527	+	BC053561|ATP9B|374868|ATPase, class II, type 9B##BC036473|ATP9B|374868|ATPase, class II, type 9B##AK308291|ATP9B|374868|ATPase, class II, type 9B##BC022535|ATP9B|374868|ATPase, class II, type 9B##BC125219|ATP9B|374868|ATPase, class II, type 9B##BC125220|ATP9B|374868|ATPase, class II, type 9B##NM_198531|ATP9B|374868|ATPase, class II, type 9B##AK093704|ATP9B|374868|ATPase, class II, type 9B##AK295981|ATP9B|374868|ATPase, class II, type 9B##NM_006162|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172388|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172390|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80917|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK292641|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80919|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	1.970975	0.0	denovo_WM_7:0:0.902	denovo_WM_7:-14:0.932
chr6	7074121	7074301	reg1000489.p2	11.113	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-349050	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-485261	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-753301	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	33615	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	33824	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	34012	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	0.0	0.0	
chr17	43379140	43379295	reg1001802.p1	11.110	+	BC028124 AF433663 AK302184 AK058143 NM_152343	-39762	-	TSC_hg19_v1_chr17_+_43325300 AK311429	-53913	+	AK096807 TSC_hg19_v1_chr17_-_43319268	-60021	-	TSC_hg19_v1_chr17_-_43394387 BC035576 BC022296 AK290203 AK313085 NM_003954	15158	-	TSC_hg19_v1_chr17_-_43487753 AK092891 AX747793 AK300880	108533	-	TSC_hg19_v1_chr17_-_43503000 AK125535 NM_199282	123784	-	BC028124|C17orf46|124783|chromosome 17 open reading frame 46##AF433663|C17orf46|124783|chromosome 17 open reading frame 46##AK302184|C17orf46|124783|chromosome 17 open reading frame 46##AK058143|C17orf46|124783|chromosome 17 open reading frame 46##NM_152343|C17orf46|124783|chromosome 17 open reading frame 46##AK311429|LOC100133991|100133991|uncharacterized LOC100133991##BC035576|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC022296|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK290203|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK313085|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##NM_003954|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK092891|ARHGAP27|201176|Rho GTPase activating protein 27##AK300880|ARHGAP27|201176|Rho GTPase activating protein 27##AK125535|ARHGAP27|201176|Rho GTPase activating protein 27##NM_199282|ARHGAP27|201176|Rho GTPase activating protein 27	0.998939	0.0	denovo_WM_7:-8:0.310	denovo_WM_7:-9:0.310	denovo_WM_7:-10:0.310
chr11	72001997	72002100	reg1001518.p1	11.106	+	TSC_hg19_v1_chr11_-_71955221 AK290645 NM_005169	-46813	-	BC041564 TSC_hg19_v1_chr11_-_71955201	-46846	-	Y14385 BC140853 NM_001567	-66196	+	TSC_hg19_v1_chr11_-_72145558 AK302069 CU675391 EU176435 EU176772 BC006404 NM_030813	143407	-	TSC_hg19_v1_chr11_-_72145569 AK302006 AK023214	143528	-	TSC_hg19_v1_chr11_-_72145602 AL136909 AK302158	143602	-	AK290645|PHOX2A|401|paired-like homeobox 2a##NM_005169|PHOX2A|401|paired-like homeobox 2a##BC041564|PHOX2A|401|paired-like homeobox 2a##Y14385|INPPL1|3636|inositol polyphosphate phosphatase-like 1##BC140853|INPPL1|3636|inositol polyphosphate phosphatase-like 1##NM_001567|INPPL1|3636|inositol polyphosphate phosphatase-like 1##AK302069|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##EU176435|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##EU176772|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##BC006404|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##NM_030813|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AK302006|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AK023214|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AL136909|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AK302158|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)	0.992223	0.154557	denovo_WM_7:-50:0.496	denovo_WM_7:-51:0.496
chr15	89185102	89185246	reg1001319.p1	11.106	+	BC007922 NM_002201 AK307769 TSC_hg19_v1_chr15_+_89182194 BC016341 U88964	-2988	+	TSC_hg19_v1_chr15_+_89164583 NM_022767 AK308119 BC020988 AF318330	-20604	+	BC109060 BC109061 BC073867 AK054603 BC064591 AB073887 NM_001144074 NM_017996	-95323	-	TSC_hg19_v1_chr15_+_89346707 U13192 AK290723 NM_001135 NM_013227 BC036445	161512	+	AY358500 AY037161 TSC_hg19_v1_chr15_-_89438761 BC053689 AY262759 NM_178232 AK292055 BC062320 AK292103	253624	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	271386	-	BC007922|ISG20|3669|interferon stimulated exonuclease gene 20kDa##NM_002201|ISG20|3669|interferon stimulated exonuclease gene 20kDa##AK307769|ISG20|3669|interferon stimulated exonuclease gene 20kDa##BC016341|ISG20|3669|interferon stimulated exonuclease gene 20kDa##U88964|ISG20|3669|interferon stimulated exonuclease gene 20kDa##NM_022767|AEN|64782|apoptosis enhancing nuclease##AK308119|AEN|64782|apoptosis enhancing nuclease##BC020988|AEN|64782|apoptosis enhancing nuclease##AF318330|AEN|64782|apoptosis enhancing nuclease##BC109060|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC109061|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC073867|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##AK054603|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##BC064591|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##AB073887|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##NM_001144074|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##NM_017996|DET1|55070|de-etiolated homolog 1 (Arabidopsis)##U13192|ACAN|176|aggrecan##AK290723|ACAN|176|aggrecan##NM_001135|ACAN|176|aggrecan##NM_013227|ACAN|176|aggrecan##BC036445|ACAN|176|aggrecan##AY358500|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY037161|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC053689|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY262759|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_178232|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292055|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC062320|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292103|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein	1.751924	0.0	denovo_WM_7:3:0.532	denovo_WM_7:-11:0.492
chr2	32489894	32490047	reg1001587.p2	11.100	+	AY358152 BC031555 AK292673 AK314762 AK095467 NM_001199138	-41	-	TSC_hg19_v1_chr2_+_32390932 NM_001193513 NM_001193514 NM_001193515 NM_017964 AK055663 AK096672 AK127716 AK304225 BC066903 EF560719 EF560726 AL832755 AF173387	-99041	+	TSC_hg19_v1_chr2_+_32288665 AB029006 BC150260 NM_014946 NM_199436 AJ246001	-201270	+	AY035391 NM_001199139 AY027787 AY027788 AY027789 AY027790 NM_021209 AF376061	835	-	TSC_hg19_v1_chr2_+_32502966 NM_032312	12992	+	TSC_hg19_v1_chr2_+_32502978 AK098486	13004	+	AY358152|NLRC4|58484|NLR family, CARD domain containing 4##BC031555|NLRC4|58484|NLR family, CARD domain containing 4##AK292673|NLRC4|58484|NLR family, CARD domain containing 4##AK314762|NLRC4|58484|NLR family, CARD domain containing 4##AK095467|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199138|NLRC4|58484|NLR family, CARD domain containing 4##NM_001193513|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193514|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193515|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_017964|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK055663|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK096672|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK127716|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK304225|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##BC066903|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560719|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560726|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AL832755|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AF173387|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AB029006|SPAST|6683|spastin##BC150260|SPAST|6683|spastin##NM_014946|SPAST|6683|spastin##NM_199436|SPAST|6683|spastin##AJ246001|SPAST|6683|spastin##AY035391|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199139|NLRC4|58484|NLR family, CARD domain containing 4##AY027787|NLRC4|58484|NLR family, CARD domain containing 4##AY027788|NLRC4|58484|NLR family, CARD domain containing 4##AY027789|NLRC4|58484|NLR family, CARD domain containing 4##AY027790|NLRC4|58484|NLR family, CARD domain containing 4##NM_021209|NLRC4|58484|NLR family, CARD domain containing 4##AF376061|NLRC4|58484|NLR family, CARD domain containing 4##NM_032312|YIPF4|84272|Yip1 domain family, member 4##AK098486|YIPF4|84272|Yip1 domain family, member 4	0.982569	0.0	denovo_WM_7:12:0.408	denovo_WM_7:13:0.490
chr5	149790177	149790344	reg1001544.p4	11.100	+	TSC_hg19_v1_chr5_+_149737296 AY460334 BC027252	-52936	+	NM_000356 NM_001008657 NM_001135243 NM_001135244 NM_001135245 NM_001195141 U40847 TSC_hg19_v1_chr5_+_149737276 U76366 AK225284 AK296918 AK303611 AK307586 BC011764 BC014559 BC033093 BC016144	-53013	+	BC111002 AB448735 NM_001012301	-107775	-	TSC_hg19_v1_chr5_-_149792315 AB590276 BT019505 CU676294 DQ892005 DQ895194 AK292076 AK297889 AK300669 AK308929 M28588 X00497 BC018726 BC024272	2043	-	TSC_hg19_v1_chr5_-_149792349 M28589	2086	-	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	2190	-	AY460334|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##BC027252|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##NM_000356|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##NM_001008657|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##NM_001135243|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##NM_001135244|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##NM_001135245|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##NM_001195141|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##U40847|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##U76366|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##AK225284|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##AK296918|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##AK303611|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##AK307586|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##BC011764|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##BC014559|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##BC033093|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##BC016144|TCOF1|6949|Treacher Collins-Franceschetti syndrome 1##BC111002|ARSI|340075|arylsulfatase family, member I##AB448735|ARSI|340075|arylsulfatase family, member I##NM_001012301|ARSI|340075|arylsulfatase family, member I##BT019505|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ892005|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ895194|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK292076|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK297889|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK300669|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK308929|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##M28588|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##X00497|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC018726|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC024272|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain	0.999812	0.0	denovo_WM_7:-6:0.230	denovo_WM_7:-7:0.230	denovo_WM_7:-8:0.230	denovo_WM_7:-9:0.230
chr1	234624474	234624597	reg1001419.p2	11.099	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	-9675	-	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	-115163	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-274529	+	TSC_hg19_v1_chr1_-_234743489 BC020516	118991	-	TSC_hg19_v1_chr1_-_234743841 AK299768	119296	-	TSC_hg19_v1_chr1_-_234743861 AK309579	119323	-	NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##BC037878|SLC35F3|148641|solute carrier family 35, member F3##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	1.973661	0.0	denovo_WM_7:5:0.831	denovo_WM_7:-40:0.638	denovo_WM_7:-41:0.308
chr10	46962661	46962800	reg1001430.p1	11.097	+	BC036539 AL050040 NM_001042363 NM_001042364 NM_001042365 NM_001042387 NM_001042395 NM_001042396 NM_001042397 NM_015605 CR933668 BX648913	-321709	-	AY704141 AY704142 AY704143 AY704144 AY704145 AY704147 AY704148 AY704150 AY704152 AY704153 AY704154 AY704156 AY704157 AY704158 NM_001042358 NM_001042359 NM_001042360 NM_001042361 NM_001042362 NM_001042390 NM_001042391 NM_001042392 NM_001042393 NM_001042394 AY753191	-322042	-	AB464105 AY704146 AY704149 AY704151 AY704155 BC093750 BC113473 BC143394 BC171725 NM_001042357 NM_001042389	-342734	-	BC139914 AK290186 TSC_hg19_v1_chr10_-_46970538	7780	-	TSC_hg19_v1_chr10_-_46970597 AK131036 AK293632 NM_031912 NM_181519	7870	-	BC011672 NM_014696	30815	+	BC036539|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AL050040|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042363|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042364|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042365|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042387|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042395|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042396|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042397|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_015605|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##CR933668|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BX648913|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704141|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704142|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704143|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704144|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704145|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704147|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704148|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704150|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704152|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704153|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704154|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704156|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704157|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704158|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042358|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042359|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042360|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042361|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042362|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042390|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042391|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042392|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042393|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042394|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##AY753191|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704146|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704149|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704151|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704155|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC093750|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC113473|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC143394|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC171725|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042357|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042389|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##BC139914|SYT15|83849|synaptotagmin XV##AK290186|SYT15|83849|synaptotagmin XV##AK131036|SYT15|83849|synaptotagmin XV##AK293632|SYT15|83849|synaptotagmin XV##NM_031912|SYT15|83849|synaptotagmin XV##NM_181519|SYT15|83849|synaptotagmin XV##BC011672|GPRIN2|9721|G protein regulated inducer of neurite outgrowth 2##NM_014696|GPRIN2|9721|G protein regulated inducer of neurite outgrowth 2	1.919373	0.81349	CTCF.p2:-17:0.813	denovo_WM_7:18:0.792	denovo_WM_7:38:0.700
chr1	12677829	12678009	reg1000365.p2	11.092	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	-336	-	TSC_hg19_v1_chr1_+_12403045 AK057675	-274849	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	-387812	+	NM_001013630	26646	+	AK127828 NM_001103169 NM_001103170	98198	+	BC029894 NM_152290 AK026705 AK298760	128247	+	DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_001013630|AADACL4|343066|arylacetamide deacetylase-like 4##AK127828|AADACL3|126767|arylacetamide deacetylase-like 3##NM_001103169|AADACL3|126767|arylacetamide deacetylase-like 3##NM_001103170|AADACL3|126767|arylacetamide deacetylase-like 3##BC029894|C1orf158|93190|chromosome 1 open reading frame 158##NM_152290|C1orf158|93190|chromosome 1 open reading frame 158##AK026705|C1orf158|93190|chromosome 1 open reading frame 158##AK298760|C1orf158|93190|chromosome 1 open reading frame 158	1.182426	0.0	
chr12	40586516	40586673	reg1001212.p1	11.091	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-86722	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-86905	-	BC038754 NM_001031748 BC048120 AK097445	-566599	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	32265	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	499688	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	995614	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.9945	0.0	denovo_WM_7:-1:0.780
chr1	16170916	16171050	reg1001517.p1	11.087	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-8627	-	BC012991 TSC_hg19_v1_chr1_-_16161389	-9649	-	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-36791	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	3396	+	TSC_hg19_v1_chr1_+_16259065 BC172907	88128	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	131487	-	AK094772|FLJ37453|729614|uncharacterized LOC729614##NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17	1.995389	0.0	denovo_WM_7:-19:0.984
chr17	60248594	60248731	reg1001461.p1	11.085	+	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	-106035	-	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	-243320	-	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-307868	-	NM_001144933	198916	+	AK098684 NM_173503 BC101752 BC101778	209264	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	252601	+	BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A	2.898996	0.0	denovo_WM_7:19:0.494	denovo_WM_7:20:0.494	denovo_WM_7:-67:0.934	denovo_WM_7:-82:0.944
chr1	199946839	199946962	reg1001260.p1	11.083	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-1040353	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-1338570	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-1338675	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	49969	+	AK316513 TSC_hg19_v1_chr1_+_200011716	64824	+	NM_001105517	235755	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.994187	0.0	denovo_WM_7:-15:0.573	denovo_WM_7:-16:0.370
chr12	110980453	110980610	reg1000815.p1	11.083	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-40456	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-40621	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-73862	+	TSC_hg19_v1_chr12_-_111020755 AY357944	40262	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	40539	-	AK124744 TSC_hg19_v1_chr12_-_111021124	40595	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	2.536716	0.0	denovo_WM_7:-29:0.905	denovo_WM_7:-44:0.475	denovo_WM_7:-45:0.492	denovo_WM_7:91:0.391
chr19	40284038	40284202	reg1001261.p2	11.079	+	NM_001143832	-16887	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-55481	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-89077	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	40678	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	47171	-	AB463635 M59849 TSC_hg19_v1_chr19_-_40336992	52848	-	NM_001143832|LEUTX|342900|leucine twenty homeobox##FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin##M59849|FBL|2091|fibrillarin	0.998213	0.0	denovo_WM_7:18:0.719
chr1	1624265	1624431	reg1000814.p1	11.077	+	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-131	-	BC092507 TSC_hg19_v1_chr1_-_1624149 AK125619	-190	-	TSC_hg19_v1_chr1_-_1623947 CR936618 BC062371	-383	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	31428	-	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	53113	-	AK296722 NM_001198995	65732	-	AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##BC092507|SLC35E2B|728661|solute carrier family 35, member E2B##AK125619|SLC35E2B|728661|solute carrier family 35, member E2B##CR936618|SLC35E2B|728661|solute carrier family 35, member E2B##BC062371|SLC35E2|9906|solute carrier family 35, member E2##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase	0.99407	0.652734	denovo_WM_7:0:0.459	denovo_WM_7:0:0.459	CTCF.p2:55:0.653
chr12	133396726	133396882	reg1001605.p3	11.077	+	BC048203 TSC_hg19_v1_chr12_-_133372555	-24247	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-58384	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-90246	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	8175	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	8494	-	TSC_hg19_v1_chr12_-_133405429 BC142658 BC146675 NM_001172557 BC060826	8658	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3##BC142658|GOLGA3|2802|golgin A3##BC146675|GOLGA3|2802|golgin A3##NM_001172557|GOLGA3|2802|golgin A3##BC060826|GOLGA3|2802|golgin A3	0.971262	0.0	denovo_WM_7:-35:0.669
chr14	24837095	24837231	reg1002220.p1	11.077	+	AK310445 EU887632 EU887633 EU887634 NM_001136022 NM_001198967	-1019	+	AF156884 AY453693 AY494982 AY494983 CU692020 TSC_hg19_v1_chr14_-_24809197 BC062584 AK296309 BC041668 AK296140 AK075275 NM_006871	-28024	-	BX248285 BC027943 AK122714 AK126468 NM_001198568 NM_001198592 NM_139247 TSC_hg19_v1_chr14_-_24804278	-32898	-	NM_001198965 NM_004554 BC037735 AK293185 TSC_hg19_v1_chr14_+_24837389 AK311078 AK311425 L41066 BC053855 AB527875 EU446638 EU887641 EU887642 EU887643	222	+	AK302271 NM_001198966 AK310433 EU887644 EU887645 EU887646 EU887647 EU887648 EU887649 AK300450	1212	+	TSC_hg19_v1_chr14_+_24868230 BC065283 NM_025081 AK021873	31093	+	AK310445|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887632|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887633|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887634|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001136022|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198967|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AF156884|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY453693|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494982|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494983|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC062584|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296309|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC041668|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296140|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK075275|RIPK3|11035|receptor-interacting serine-threonine kinase 3##NM_006871|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BX248285|ADCY4|196883|adenylate cyclase 4##BC027943|ADCY4|196883|adenylate cyclase 4##AK122714|ADCY4|196883|adenylate cyclase 4##AK126468|ADCY4|196883|adenylate cyclase 4##NM_001198568|ADCY4|196883|adenylate cyclase 4##NM_001198592|ADCY4|196883|adenylate cyclase 4##NM_139247|ADCY4|196883|adenylate cyclase 4##NM_001198965|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_004554|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC037735|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK293185|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311078|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311425|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##L41066|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC053855|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU446638|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887641|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887642|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887643|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK302271|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198966|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK310433|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887644|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887645|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887646|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887647|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887648|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887649|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK300450|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC065283|NYNRIN|57523|NYN domain and retroviral integrase containing##NM_025081|NYNRIN|57523|NYN domain and retroviral integrase containing##AK021873|NYNRIN|57523|NYN domain and retroviral integrase containing	0.979322	0.0	denovo_WM_7:41:0.450	denovo_WM_7:43:0.475
chr10	91413358	91413505	reg1001101.p1	11.075	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-8107	-	TSC_hg19_v1_chr10_-_91404973 AK125428	-8488	-	AF355198 AY027662 AY027663 NM_138316 NM_148978	-9793	-	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	47944	+	TSC_hg19_v1_chr10_+_91498725 AK025628	85336	+	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	1204015	-	AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AK125428|PANK1|53354|pantothenate kinase 1##AF355198|PANK1|53354|pantothenate kinase 1##AY027662|PANK1|53354|pantothenate kinase 1##AY027663|PANK1|53354|pantothenate kinase 1##NM_138316|PANK1|53354|pantothenate kinase 1##NM_148978|PANK1|53354|pantothenate kinase 1##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AK025628|KIF20B|9585|kinesin family member 20B##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)	0.950801	0.0	denovo_WM_7:6:0.621	denovo_WM_7:11:0.237
chrX	118955754	118955901	reg1002107.p1	11.075	+	U57846 AK098280 BC001019 D79205 TSC_hg19_v1_chrX_-_118925592 BC070205 D28397 NM_001000	-30243	-	TSC_hg19_v1_chrX_+_118892553 NM_001105576	-63246	+	AY034177 AF403058 AF403059 AF403060 AF403061 AF403062 AY679521 NM_015129 NM_145799 NM_145800 NM_145802 TSC_hg19_v1_chrX_-_118827360 AK290977	-128476	-	TSC_hg19_v1_chrX_-_118986969 AF318576 AK093728 AX748280 BC121017 BC121018 AY013251 BC008494 NM_023010 NM_080632	31124	-	AB464688 BT007175 CU676558 BC000832 TSC_hg19_v1_chrX_-_119005683 BC128440 BC020556 AK314778 X98253 NM_006978	49855	-	NM_004541 TSC_hg19_v1_chrX_+_119005781	49932	+	U57846|RPL39|6170|ribosomal protein L39##BC001019|RPL39|6170|ribosomal protein L39##D79205|RPL39|6170|ribosomal protein L39##BC070205|RPL39|6170|ribosomal protein L39##D28397|RPL39|6170|ribosomal protein L39##NM_001000|RPL39|6170|ribosomal protein L39##NM_001105576|ANKRD58|347454|ankyrin repeat domain 58##AY034177|SEPT6|23157|septin 6##AF403058|SEPT6|23157|septin 6##AF403059|SEPT6|23157|septin 6##AF403060|SEPT6|23157|septin 6##AF403061|SEPT6|23157|septin 6##AF403062|SEPT6|23157|septin 6##AY679521|SEPT6|23157|septin 6##NM_015129|SEPT6|23157|septin 6##NM_145799|SEPT6|23157|septin 6##NM_145800|SEPT6|23157|septin 6##NM_145802|SEPT6|23157|septin 6##AK290977|SEPT6|23157|septin 6##AF318576|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AK093728|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121017|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121018|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AY013251|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC008494|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_023010|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_080632|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BT007175|RNF113A|7737|ring finger protein 113A##BC000832|RNF113A|7737|ring finger protein 113A##BC020556|RNF113A|7737|ring finger protein 113A##AK314778|RNF113A|7737|ring finger protein 113A##X98253|RNF113A|7737|ring finger protein 113A##NM_006978|RNF113A|7737|ring finger protein 113A##NM_004541|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa	1.026165	0.0	denovo_WM_7:-58:0.476
chr16	11421361	11421518	reg1001516.p1	11.074	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-46297	-	BC042671 X07862 AK130957 AK131573 AK292447 AK307320 AK311798 BC005303 BC066338 NM_002762	-51119	-	NM_021247	-53988	-	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	17855	+	TSC_hg19_v1_chr16_+_11439315 BC013040	17879	+	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	258748	-	BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC042671|PRM2|5620|protamine 2##X07862|PRM2|5620|protamine 2##AK130957|PRM2|5620|protamine 2##AK131573|PRM2|5620|protamine 2##AK292447|PRM2|5620|protamine 2##AK311798|PRM2|5620|protamine 2##BC005303|PRM2|5620|protamine 2##BC066338|PRM2|5620|protamine 2##NM_002762|PRM2|5620|protamine 2##NM_021247|PRM3|58531|protamine 3##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor	0.987755	0.0	denovo_WM_7:16:0.965
chr19	1345131	1345257	reg1000073.p3	11.072	+	TSC_hg19_v1_chr19_+_1286081 AJ007292 NM_001405 AB463609	-59229	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	-69627	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	-74245	+	TSC_hg19_v1_chr19_+_1354979 NM_032853 AK310721 U20897	9807	+	TSC_hg19_v1_chr19_+_1383882 AK092169 AX747389 NM_024407 AK128713	38692	+	AK293917 AK297611 TSC_hg19_v1_chr19_+_1383902 AF115969 AK091623 AK127759 AX747100	38706	+	AJ007292|EFNA2|1943|ephrin-A2##NM_001405|EFNA2|1943|ephrin-A2##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_032853|MUM1|84939|melanoma associated antigen (mutated) 1##AK310721|MUM1|84939|melanoma associated antigen (mutated) 1##U20897|MUM1|84939|melanoma associated antigen (mutated) 1##AK092169|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##NM_024407|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK128713|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK293917|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AF115969|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK091623|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK127759|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)	2.157666	0.0	denovo_WM_7:-2:0.273	denovo_WM_7:-3:0.364	denovo_WM_7:-4:0.346	denovo_WM_7:69:0.841
chr3	97722214	97722365	reg1001543.p1	11.071	+	TSC_hg19_v1_chr3_-_97691261 NM_001042533 NM_032778 AK027299 DQ453796 AB083192 NM_153182	-31012	-	TSC_hg19_v1_chr3_+_97540854 AK296966	-181419	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	-238689	+	CR749263 NM_001105580	31858	-	AB528856 NM_054106	83727	+	AB528772 NM_001005338	129251	+	NM_001042533|MINA|84864|MYC induced nuclear antigen##NM_032778|MINA|84864|MYC induced nuclear antigen##AK027299|MINA|84864|MYC induced nuclear antigen##DQ453796|MINA|84864|MYC induced nuclear antigen##AB083192|MINA|84864|MYC induced nuclear antigen##NM_153182|MINA|84864|MYC induced nuclear antigen##AK296966|CRYBG3|131544|beta-gamma crystallin domain containing 3##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6##CR749263|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3##NM_001105580|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3##NM_054106|OR5AC2|81050|olfactory receptor, family 5, subfamily AC, member 2##NM_001005338|OR5H1|26341|olfactory receptor, family 5, subfamily H, member 1	0.992255	0.0	denovo_WM_7:-20:0.837
chr22	39399195	39399333	reg1001563.p2	11.069	+	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	-20833	+	NM_001193289 NM_145699 U03891 BC126416 BC144146 CR456393 AB528063 CU012950 CU013238 HQ258100	-45654	+	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	-130960	-	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	10987	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	11062	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	17863	+	AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##NM_001193289|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##NM_145699|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##U03891|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC126416|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC144146|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CR456393|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU012950|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU013238|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##HQ258100|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D	0.99834	0.746414	CTCF.p2:16:0.746	denovo_WM_7:-53:0.457	denovo_WM_7:-54:0.457
chr8	22840927	22841106	reg1001469.p2	11.069	+	AB590982 AY730275 AY037148 BC020779 AY359109 NM_144962	-55692	-	AK292464 AK313604 X63741 NM_004430 S40832 TSC_hg19_v1_chr8_-_22550853	-290232	-	AB529193 HQ258229 TSC_hg19_v1_chr8_-_22550508 BC112279 BC104765	-290511	-	AK092617 BC034917 NM_001160036	3907	+	NM_001160037	12344	+	TSC_hg19_v1_chr8_+_22857067 AB018260 NM_015178	16061	+	AY730275|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY037148|PEBP4|157310|phosphatidylethanolamine-binding protein 4##BC020779|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY359109|PEBP4|157310|phosphatidylethanolamine-binding protein 4##NM_144962|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AK292464|EGR3|1960|early growth response 3##AK313604|EGR3|1960|early growth response 3##X63741|EGR3|1960|early growth response 3##NM_004430|EGR3|1960|early growth response 3##S40832|EGR3|1960|early growth response 3##HQ258229|EGR3|1960|early growth response 3##BC112279|EGR3|1960|early growth response 3##BC104765|EGR3|1960|early growth response 3##BC034917|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160036|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160037|RHOBTB2|23221|Rho-related BTB domain containing 2##AB018260|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_015178|RHOBTB2|23221|Rho-related BTB domain containing 2	0.987345	0.0	denovo_WM_7:-6:0.475
chr20	33307425	33307571	reg1001266.p1	11.068	+	AL122050 TSC_hg19_v1_chr20_+_33299806	-7705	+	AK027153 AK025412 TSC_hg19_v1_chr20_+_33299500	-8088	+	TSC_hg19_v1_chr20_+_33292147 AY422170 NM_021202 AJ297792 AK292443 BC035639	-15295	+	TSC_hg19_v1_chr20_-_33413434 BC069829 BC035676 NM_001242539 NM_014071 BC047886	105916	-	TSC_hg19_v1_chr20_-_33460644 AY138815 BC040030 AK124788 AK098355 BC101371 BC141843 BC101370 BC101372 AK299494 BC033745 NM_178026	153127	-	NM_001242393 TSC_hg19_v1_chr20_+_33462793 AK000162	155304	+	AL122050|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK027153|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK025412|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AY422170|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##NM_021202|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AJ297792|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK292443|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC035639|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC069829|NCOA6|23054|nuclear receptor coactivator 6##BC035676|NCOA6|23054|nuclear receptor coactivator 6##NM_001242539|NCOA6|23054|nuclear receptor coactivator 6##NM_014071|NCOA6|23054|nuclear receptor coactivator 6##BC047886|NCOA6|23054|nuclear receptor coactivator 6##AY138815|GGT7|2686|gamma-glutamyltransferase 7##BC040030|GGT7|2686|gamma-glutamyltransferase 7##AK124788|GGT7|2686|gamma-glutamyltransferase 7##BC101371|GGT7|2686|gamma-glutamyltransferase 7##BC141843|GGT7|2686|gamma-glutamyltransferase 7##BC101370|GGT7|2686|gamma-glutamyltransferase 7##BC101372|GGT7|2686|gamma-glutamyltransferase 7##AK299494|GGT7|2686|gamma-glutamyltransferase 7##BC033745|GGT7|2686|gamma-glutamyltransferase 7##NM_178026|GGT7|2686|gamma-glutamyltransferase 7##NM_001242393|ACSS2|55902|acyl-CoA synthetase short-chain family member 2##AK000162|ACSS2|55902|acyl-CoA synthetase short-chain family member 2	1.464502	0.0	denovo_WM_7:-25:0.890	denovo_WM_7:-57:0.454
chr9	134144452	134144632	reg1001073.p2	11.066	+	TSC_hg19_v1_chr9_+_134001016 D14689 AB159230	-143492	+	TSC_hg19_v1_chr9_+_134000975 BC105998 AK307573 NM_005085 AL832609 X64228 BC045620 BC012500	-143568	+	TSC_hg19_v1_chr9_+_133971917 AY359067 AK057789 AK314600 AK022845 AK128526 AK091912 AL136566 AL833896 BC009826 BC021253 AM392853 AM393301 AM393860	-172584	+	BC049388 NM_033387 AK095423	7377	-	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	20686	+	TSC_hg19_v1_chr9_+_134269515 BC002872	125024	+	D14689|NUP214|8021|nucleoporin 214kDa##AB159230|NUP214|8021|nucleoporin 214kDa##BC105998|NUP214|8021|nucleoporin 214kDa##AK307573|NUP214|8021|nucleoporin 214kDa##NM_005085|NUP214|8021|nucleoporin 214kDa##AL832609|NUP214|8021|nucleoporin 214kDa##X64228|NUP214|8021|nucleoporin 214kDa##BC045620|NUP214|8021|nucleoporin 214kDa##BC012500|NUP214|8021|nucleoporin 214kDa##AY359067|AIF1L|83543|allograft inflammatory factor 1-like##AK057789|AIF1L|83543|allograft inflammatory factor 1-like##AK314600|AIF1L|83543|allograft inflammatory factor 1-like##AK022845|AIF1L|83543|allograft inflammatory factor 1-like##AK128526|AIF1L|83543|allograft inflammatory factor 1-like##AK091912|AIF1L|83543|allograft inflammatory factor 1-like##AL136566|AIF1L|83543|allograft inflammatory factor 1-like##AL833896|AIF1L|83543|allograft inflammatory factor 1-like##BC009826|AIF1L|83543|allograft inflammatory factor 1-like##BC021253|AIF1L|83543|allograft inflammatory factor 1-like##AM392853|AIF1L|83543|allograft inflammatory factor 1-like##AM393301|AIF1L|83543|allograft inflammatory factor 1-like##AM393860|AIF1L|83543|allograft inflammatory factor 1-like##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC002872|PRRC2B|84726|proline-rich coiled-coil 2B	0.993377	0.0	
chr2	166150441	166150595	reg1000785.p1	11.064	+	NM_021007	-178	+	AK289656 NM_001040142 DQ993531 BC029489 BC047398 BC048417	-54586	+	AF225986 AF225987 AK299757 TSC_hg19_v1_chr2_-_166060561 NM_001081676 NM_001081677 NM_006922 DQ993536	-89941	-	NM_001040143	1764	+	AK126129 NM_001172173 TSC_hg19_v1_chr2_+_166326207	175666	+	NM_024969 AK056655 TSC_hg19_v1_chr2_+_166428851	278331	+	NM_021007|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##AK289656|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##NM_001040142|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##DQ993531|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC029489|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC047398|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC048417|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##AF225986|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AF225987|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AK299757|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001081676|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001081677|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_006922|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001040143|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##AK126129|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##NM_001172173|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##NM_024969|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##AK056655|CSRNP3|80034|cysteine-serine-rich nuclear protein 3	2.979487	0.0	denovo_WM_7:9:0.890	denovo_WM_7:24:0.877	denovo_WM_7:39:0.813
chr5	133223721	133223860	reg1000876.p1	11.064	+	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	-275552	-	TSC_hg19_v1_chr5_-_132948202 AK055684	-275591	-	TSC_hg19_v1_chr5_+_132432890 AK315862	-790899	+	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	80585	-	TSC_hg19_v1_chr5_-_133340377 BC008482	116577	-	TSC_hg19_v1_chr5_-_133340386 BC090042	116593	-	NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##AK055684|FSTL4|23105|follistatin-like 4##AK315862|HSPA4|3308|heat shock 70kDa protein 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15##BC008482|VDAC1|7416|voltage-dependent anion channel 1##BC090042|VDAC1|7416|voltage-dependent anion channel 1	0.99936	0.0	
chr1	109642542	109642707	reg1001664.p1	11.056	+	BC066918 AK075191 TSC_hg19_v1_chr1_+_109633380 AF164793 AK310192 BC008739 BC065186 NM_020141 AK291293 BC067116	-9230	+	AB587451 TSC_hg19_v1_chr1_-_109618626 X84003 BC017821 BC121180 BC121181 AK312158 NM_005645	-24023	-	TSC_hg19_v1_chr1_-_109584725 AK225781 AB020700 AK289789 BC039254 BC034964 NM_001142550 NM_001142551 NM_014969	-57905	-	BC071822 TSC_hg19_v1_chr1_+_109642814	190	+	BC127904 BC141949 BC141950 BC150515 TSC_hg19_v1_chr1_+_109648698	6021	+	NM_001122961	13854	-	BC066918|TMEM167B|56900|transmembrane protein 167B##AK075191|TMEM167B|56900|transmembrane protein 167B##AF164793|TMEM167B|56900|transmembrane protein 167B##AK310192|TMEM167B|56900|transmembrane protein 167B##BC008739|TMEM167B|56900|transmembrane protein 167B##BC065186|TMEM167B|56900|transmembrane protein 167B##NM_020141|TMEM167B|56900|transmembrane protein 167B##AK291293|TMEM167B|56900|transmembrane protein 167B##BC067116|TMEM167B|56900|transmembrane protein 167B##X84003|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121180|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121181|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##AK312158|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##NM_005645|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##AK225781|WDR47|22911|WD repeat domain 47##AB020700|WDR47|22911|WD repeat domain 47##AK289789|WDR47|22911|WD repeat domain 47##BC039254|WDR47|22911|WD repeat domain 47##BC034964|WDR47|22911|WD repeat domain 47##NM_001142550|WDR47|22911|WD repeat domain 47##NM_001142551|WDR47|22911|WD repeat domain 47##NM_014969|WDR47|22911|WD repeat domain 47##BC071822|SCARNA2|677766|small Cajal body-specific RNA 2##NM_001122961|C1orf194|127003|chromosome 1 open reading frame 194	0.953068	0.015117	denovo_WM_7:-22:0.953
chr16	13647464	13647627	reg1001573.p3	11.056	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-652077	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-749826	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-749894	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	366486	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	517541	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	632973	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.998635	0.0	denovo_WM_7:-3:0.495
chr15	101667780	101667899	reg1001217.p2	11.055	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-208327	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-208365	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-247768	+	AB071402 TSC_hg19_v1_chr15_-_101791795	123897	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	124296	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	149824	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.996195	0.0	denovo_WM_7:-26:0.829
chr19	46209721	46209895	reg1001571.p1	11.053	+	TSC_hg19_v1_chr19_+_46195931 AK000091 AK172764 AK222636 BC011553 AB528634	-13880	+	NM_001163377 NM_017659	-14068	+	NM_004597 NM_177542	-14366	-	TSC_hg19_v1_chr19_-_46220589 AK091414 AX746967	10805	-	TSC_hg19_v1_chr19_-_46234155 NM_001080469	24339	-	AB464211 TSC_hg19_v1_chr19_-_46272110	62307	-	AK000091|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK172764|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK222636|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##BC011553|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_001163377|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_017659|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_004597|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_177542|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_001080469|FBXO46|23403|F-box protein 46	0.094805	0.017672	
chr7	144028678	144028818	reg1001895.p1	11.053	+	NM_001001802 NM_001005287	-13531	+	CR749203 TSC_hg19_v1_chr7_-_143991278	-37481	-	AK292236 NM_198495	-62363	-	AK160365 TSC_hg19_v1_chr7_+_144052469 NM_005435 CR749203 BC136661	23755	+	NM_001080413 AB528776	78571	-	TSC_hg19_v1_chr7_-_144533086 AK091736	504341	-	NM_001001802|OR2A42|402317|olfactory receptor, family 2, subfamily A, member 42##NM_001005287|OR2A1|346528|olfactory receptor, family 2, subfamily A, member 1##CR749203|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##AK292236|CTAGE8|100142659|CTAGE family, member 8##NM_198495|CTAGE4|100128553|CTAGE family, member 4##AK160365|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##NM_005435|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##CR749203|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##BC136661|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##NM_001080413|NOBOX|135935|NOBOX oogenesis homeobox##AK091736|TPK1|27010|thiamin pyrophosphokinase 1	0.972783	0.925014	CTCF.p2:25:0.925	denovo_WM_7:-37:0.973
chr13	109815145	109815325	reg1001547.p2	11.045	+	AB290159 AK127806 NM_001198950	-533666	+	AB020672 BC146791 NM_015011 AL834447	-566721	+	DQ857728 TSC_hg19_v1_chr13_+_108955871	-859418	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	623673	-	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	987500	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	1144274	-	AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1	0.367445	0.0	denovo_WM_7:-32:0.304
chr10	5855482	5855612	reg1001545.p1	11.044	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-112	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-281	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-82875	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	76309	-	TSC_hg19_v1_chr10_+_5932205 AK095343	76652	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	76664	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.0	0.0	
chr8	94948112	94948235	reg1001576.p2	11.043	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	-18138	+	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	-18993	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-181059	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	272621	-	AK312873 NM_001144663	281357	-	U10550 TSC_hg19_v1_chr8_-_95274525	326349	-	NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK312873|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_001144663|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##U10550|GEM|2669|GTP binding protein overexpressed in skeletal muscle	0.990259	0.0	denovo_WM_7:2:0.898
chr19	50872671	50872807	reg1001211.p1	11.038	+	AF090386 DQ891993 DQ895183 CU676086 AF200345 BC029397 AK308013 AK314364 BC017842 AF098484 NM_004851	-3836	-	BC085008 BC006149 BC111705 BC040958 BC053864 BC065203 BC032360 AF090387 AF098485 AF200344 AK300884 BC019048 AK310134 TSC_hg19_v1_chr19_-_50848025	-24747	-	AF055989 NM_004977	-40106	-	TSC_hg19_v1_chr19_+_50879744 NM_007121 AK297978 BC047750 CR749648 U07132 BC074500 AK290855 BC033500	6988	+	AB209560 TSC_hg19_v1_chr19_+_50887563	14786	+	NM_002691 TSC_hg19_v1_chr19_+_50887592 M80397 M81735 BC008800	14865	+	AF090386|NAPSA|9476|napsin A aspartic peptidase##DQ891993|NAPSA|9476|napsin A aspartic peptidase##DQ895183|NAPSA|9476|napsin A aspartic peptidase##AF200345|NAPSA|9476|napsin A aspartic peptidase##BC029397|NAPSA|9476|napsin A aspartic peptidase##AK308013|NAPSA|9476|napsin A aspartic peptidase##AK314364|NAPSA|9476|napsin A aspartic peptidase##BC017842|NAPSA|9476|napsin A aspartic peptidase##AF098484|NAPSA|9476|napsin A aspartic peptidase##NM_004851|NAPSA|9476|napsin A aspartic peptidase##BC085008|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC006149|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC111705|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC040958|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC053864|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC065203|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC032360|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF090387|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF098485|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF200344|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK300884|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC019048|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK310134|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF055989|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_004977|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_007121|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK297978|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC047750|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##CR749648|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##U07132|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC074500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK290855|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC033500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AB209560|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##NM_002691|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M80397|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M81735|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##BC008800|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa	1.970155	0.0	denovo_WM_7:82:0.928
chr3	58293547	58293678	reg1001357.p1	11.038	+	AK311396 TSC_hg19_v1_chr3_+_58292265 AK311969	-1351	+	TSC_hg19_v1_chr3_+_58292022 BC012017 BC002441 BC007342	-1595	+	TSC_hg19_v1_chr3_+_58292000 AF001175	-1612	+	TSC_hg19_v1_chr3_+_58318618 AY274811 NM_017771 AK000342 AK295542	25001	+	TSC_hg19_v1_chr3_+_58318663 BC008943 AB209688 AK131385 AY437879 AK296215 BC014479 AY847220 AY847221 AY847222 AF399753 CU677017 DQ124707 DQ124708	25062	+	M34056 M19123 BC004115 AB528205 AM392999 AM393278 CR541911 CU674222 DQ891366 DQ894546 M34479 M34055 M54788 AB209241 AL117618 AK293153 BC000439 BC001924 TSC_hg19_v1_chr3_-_58419557 AK225569 AK311514 AK313022 J03576 X57778 AK225621 NM_000925 NM_001173468	125870	-	AK311396|RPP14|11102|ribonuclease P/MRP 14kDa subunit##AK311969|RPP14|11102|ribonuclease P/MRP 14kDa subunit##BC012017|RPP14|11102|ribonuclease P/MRP 14kDa subunit##BC002441|RPP14|11102|ribonuclease P/MRP 14kDa subunit##BC007342|RPP14|11102|ribonuclease P/MRP 14kDa subunit##AF001175|RPP14|11102|ribonuclease P/MRP 14kDa subunit##AY274811|PXK|54899|PX domain containing serine/threonine kinase##NM_017771|PXK|54899|PX domain containing serine/threonine kinase##AK000342|PXK|54899|PX domain containing serine/threonine kinase##AK295542|PXK|54899|PX domain containing serine/threonine kinase##BC008943|PXK|54899|PX domain containing serine/threonine kinase##AB209688|PXK|54899|PX domain containing serine/threonine kinase##AK131385|PXK|54899|PX domain containing serine/threonine kinase##AY437879|PXK|54899|PX domain containing serine/threonine kinase##AK296215|PXK|54899|PX domain containing serine/threonine kinase##BC014479|PXK|54899|PX domain containing serine/threonine kinase##AY847220|PXK|54899|PX domain containing serine/threonine kinase##AY847221|PXK|54899|PX domain containing serine/threonine kinase##AY847222|PXK|54899|PX domain containing serine/threonine kinase##AF399753|PXK|54899|PX domain containing serine/threonine kinase##DQ124707|PXK|54899|PX domain containing serine/threonine kinase##DQ124708|PXK|54899|PX domain containing serine/threonine kinase##M34056|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M19123|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC004115|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AM392999|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AM393278|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##CR541911|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##DQ891366|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##DQ894546|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M34479|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M34055|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M54788|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AB209241|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AL117618|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK293153|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC000439|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC001924|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK225569|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK311514|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK313022|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##J03576|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##X57778|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK225621|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_000925|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_001173468|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta	0.999715	0.977963	denovo_WM_7:-12:0.721	CTCF.p2:-45:0.978
chr15	85278220	85278400	reg1001737.p2	11.036	+	TSC_hg19_v1_chr15_-_85259675 BC014508 NM_014300 AK314146	-18629	-	AF090315 AF108945 CR457127 DQ891826 AF087906 AK300693 TSC_hg19_v1_chr15_-_85259371 AK223224 BC000359 AF061737	-18964	-	BC007407 BC007431 NM_021077 NM_205858	-76513	-	TSC_hg19_v1_chr15_+_85291590 D86966	13272	+	TSC_hg19_v1_chr15_+_85291820 NM_014630	13515	+	TSC_hg19_v1_chr15_+_85291875 BC094688	13552	+	BC014508|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##NM_014300|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK314146|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF090315|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF108945|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##CR457127|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##DQ891826|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF087906|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK300693|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK223224|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC000359|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF061737|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC007407|NMB|4828|neuromedin B##BC007431|NMB|4828|neuromedin B##NM_021077|NMB|4828|neuromedin B##NM_205858|NMB|4828|neuromedin B##D86966|ZNF592|9640|zinc finger protein 592##NM_014630|ZNF592|9640|zinc finger protein 592##BC094688|ZNF592|9640|zinc finger protein 592	0.998979	0.028485	denovo_WM_7:-35:0.462	denovo_WM_7:-36:0.518
chr15	67443055	67443166	reg1001311.p2	11.032	+	AK298139 NM_001145103	-12752	+	NM_001145102 AK316017	-24987	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-84709	+	NM_001145104 AK300614 AK301348	15386	+	AB528136 AM393020 AM393411 CR533540 CU691322 TSC_hg19_v1_chr15_-_67547000 AK021568 AL136715 BC058886 BC047026 BC035852 NM_024666	103910	-	TSC_hg19_v1_chr15_+_67547171 BC039463 NM_001031715 NM_022784 AY014282 AK292478 AK304303 BC031041 BC048964 BC039292 AK022538 CU690588	104064	+	AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3##AM393020|AAGAB|79719|alpha- and gamma-adaptin binding protein##AM393411|AAGAB|79719|alpha- and gamma-adaptin binding protein##CR533540|AAGAB|79719|alpha- and gamma-adaptin binding protein##AK021568|AAGAB|79719|alpha- and gamma-adaptin binding protein##AL136715|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC058886|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC047026|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC035852|AAGAB|79719|alpha- and gamma-adaptin binding protein##NM_024666|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC039463|IQCH|64799|IQ motif containing H##NM_001031715|IQCH|64799|IQ motif containing H##NM_022784|IQCH|64799|IQ motif containing H##AY014282|IQCH|64799|IQ motif containing H##AK292478|IQCH|64799|IQ motif containing H##AK304303|IQCH|64799|IQ motif containing H##BC031041|IQCH|64799|IQ motif containing H##BC048964|IQCH|64799|IQ motif containing H##BC039292|IQCH|64799|IQ motif containing H##AK022538|IQCH|64799|IQ motif containing H	2.062284	0.0	
chr10	111974239	111974346	reg1000464.p1	11.031	+	BC012907 NM_001008541	-4304	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-6933	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-206325	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	11529	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	90301	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	90408	-	BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1	0.0	0.0	
chr6	45798567	45798747	reg1001381.p1	11.031	+	TSC_hg19_v1_chr6_+_45390379 L40992	-408245	+	TSC_hg19_v1_chr6_+_45390325 BC108919 BC108920	-408352	+	TSC_hg19_v1_chr6_+_45389825 NM_004348	-408792	+	DQ892643 DQ895881 CU690236 AF176920 AK314416 AK075163 TSC_hg19_v1_chr6_-_45983598 AK075144 AF216941 AK222544 BC035968 DQ679794 AK223130 NM_016929	184820	-	AY032602 AK097048 NM_001114086	249374	-	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	299057	+	L40992|RUNX2|860|runt-related transcription factor 2##BC108919|RUNX2|860|runt-related transcription factor 2##BC108920|RUNX2|860|runt-related transcription factor 2##NM_004348|RUNX2|860|runt-related transcription factor 2##DQ892643|CLIC5|53405|chloride intracellular channel 5##DQ895881|CLIC5|53405|chloride intracellular channel 5##AF176920|CLIC5|53405|chloride intracellular channel 5##AK314416|CLIC5|53405|chloride intracellular channel 5##AK075163|CLIC5|53405|chloride intracellular channel 5##AK075144|CLIC5|53405|chloride intracellular channel 5##AF216941|CLIC5|53405|chloride intracellular channel 5##AK222544|CLIC5|53405|chloride intracellular channel 5##BC035968|CLIC5|53405|chloride intracellular channel 5##DQ679794|CLIC5|53405|chloride intracellular channel 5##AK223130|CLIC5|53405|chloride intracellular channel 5##NM_016929|CLIC5|53405|chloride intracellular channel 5##AY032602|CLIC5|53405|chloride intracellular channel 5##AK097048|CLIC5|53405|chloride intracellular channel 5##NM_001114086|CLIC5|53405|chloride intracellular channel 5##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	1.964111	0.0	denovo_WM_7:11:0.929
chr4	77669956	77670077	reg1001337.p2	11.027	+	TSC_hg19_v1_chr4_+_77610738 AK304103	-59265	+	AK027744 TSC_hg19_v1_chr4_+_77610613	-59405	+	AB055660 NM_020859	-313764	+	NM_001029870 BC137241 BC137255	149023	-	TSC_hg19_v1_chr4_+_77870905 BC008083 NM_018243	200869	+	TSC_hg19_v1_chr4_+_77870908 BC064934	200896	+	AK304103|SHROOM3|57619|shroom family member 3##AK027744|SHROOM3|57619|shroom family member 3##AB055660|SHROOM3|57619|shroom family member 3##NM_020859|SHROOM3|57619|shroom family member 3##NM_001029870|ANKRD56|345079|ankyrin repeat domain 56##BC137241|ANKRD56|345079|ankyrin repeat domain 56##BC137255|ANKRD56|345079|ankyrin repeat domain 56##BC008083|SEPT11|55752|septin 11##NM_018243|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11	0.999898	0.204453	CTCF.p2:29:0.204
chr19	49100488	49100638	reg1001305.p1	11.026	+	NM_004605	-21571	+	TSC_hg19_v1_chr19_+_49055432 NM_177973 U92315 BC034694 CU689942	-45099	+	AB067470 NM_001080434	-84132	-	AF353721 NM_133498 AY358387 BC047334	9446	+	BC111970 BC111972 NM_017708 AK000207	16192	-	TSC_hg19_v1_chr19_-_49122434 L11566 BC009708 BC051837 AK091257 AX746879 AK026558 AK293386 BC021743 D28461 NM_000979	21870	-	NM_004605|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##NM_177973|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##U92315|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##BC034694|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##AB067470|LMTK3|114783|lemur tyrosine kinase 3##NM_001080434|LMTK3|114783|lemur tyrosine kinase 3##AF353721|SPACA4|171169|sperm acrosome associated 4##NM_133498|SPACA4|171169|sperm acrosome associated 4##AY358387|SPACA4|171169|sperm acrosome associated 4##BC047334|SPACA4|171169|sperm acrosome associated 4##BC111970|FAM83E|54854|family with sequence similarity 83, member E##BC111972|FAM83E|54854|family with sequence similarity 83, member E##NM_017708|FAM83E|54854|family with sequence similarity 83, member E##AK000207|FAM83E|54854|family with sequence similarity 83, member E##L11566|RPL18|6141|ribosomal protein L18##BC009708|RPL18|6141|ribosomal protein L18##AK026558|RPL18|6141|ribosomal protein L18##AK293386|RPL18|6141|ribosomal protein L18##BC021743|RPL18|6141|ribosomal protein L18##D28461|RPL18|6141|ribosomal protein L18##NM_000979|RPL18|6141|ribosomal protein L18	0.993717	0.0	
chr19	41260937	41261097	reg1001208.p1	11.024	+	TSC_hg19_v1_chr19_+_41257100 AK293140 AK313182 X06347 BC008290 AB464219 CU674198	-3818	+	NM_004596 TSC_hg19_v1_chr19_+_41256782 BC000405	-4241	+	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	-4615	-	NM_001202553	20064	+	NM_006533 X75450 BC005910 BT007044 CR541648	20347	+	TSC_hg19_v1_chr19_+_41284141 NM_016154	23087	+	AK293140|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK313182|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##X06347|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC008290|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##NM_004596|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC000405|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54##NM_001202553|MIA|8190|melanoma inhibitory activity##NM_006533|MIA|8190|melanoma inhibitory activity##X75450|MIA|8190|melanoma inhibitory activity##BC005910|MIA|8190|melanoma inhibitory activity##BT007044|MIA|8190|melanoma inhibitory activity##CR541648|MIA|8190|melanoma inhibitory activity##NM_016154|RAB4B|53916|RAB4B, member RAS oncogene family	0.015485	0.0	
chr16	73050207	73050359	reg1001602.p1	11.023	+	TSC_hg19_v1_chr16_-_72991733 BC029653	-58578	-	TSC_hg19_v1_chr16_+_72699031 AK021563	-351219	+	AK122925 NM_001160213	-843935	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	31938	-	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	42303	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	1280410	+	BC029653|ZFHX3|463|zinc finger homeobox 3##AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.991291	0.0	denovo_WM_7:11:0.789
chr14	23358112	23358268	reg1001063.p2	11.022	+	AK299238 AK096283 NM_173527 BC035663	-5755	+	TSC_hg19_v1_chr14_+_23341364 AL834518 AK291030 BC113714 BC113716	-16768	+	TSC_hg19_v1_chr14_+_23340981 NM_014045 AY358399 BX161500	-17169	+	TSC_hg19_v1_chr14_-_23388350 BX161440 BC024208 BC106012 AL834198 AF087905 AK001344 AF275678 AK125593 AK225792 AK295448 AK303668 AK308055 AK315620	30136	-	TSC_hg19_v1_chr14_-_23388359 BC002566	30177	-	TSC_hg19_v1_chr14_-_23388390 NM_001077351 NM_001077352 NM_018107	30202	-	AK299238|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##AK096283|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##NM_173527|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##BC035663|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##AL834518|LRP10|26020|low density lipoprotein receptor-related protein 10##AK291030|LRP10|26020|low density lipoprotein receptor-related protein 10##BC113714|LRP10|26020|low density lipoprotein receptor-related protein 10##BC113716|LRP10|26020|low density lipoprotein receptor-related protein 10##NM_014045|LRP10|26020|low density lipoprotein receptor-related protein 10##AY358399|LRP10|26020|low density lipoprotein receptor-related protein 10##BX161500|LRP10|26020|low density lipoprotein receptor-related protein 10##BX161440|RBM23|55147|RNA binding motif protein 23##BC024208|RBM23|55147|RNA binding motif protein 23##BC106012|RBM23|55147|RNA binding motif protein 23##AL834198|RBM23|55147|RNA binding motif protein 23##AF087905|RBM23|55147|RNA binding motif protein 23##AK001344|RBM23|55147|RNA binding motif protein 23##AF275678|RBM23|55147|RNA binding motif protein 23##AK125593|RBM23|55147|RNA binding motif protein 23##AK225792|RBM23|55147|RNA binding motif protein 23##AK295448|RBM23|55147|RNA binding motif protein 23##AK303668|RBM23|55147|RNA binding motif protein 23##AK308055|RBM23|55147|RNA binding motif protein 23##AK315620|RBM23|55147|RNA binding motif protein 23##BC002566|RBM23|55147|RNA binding motif protein 23##NM_001077351|RBM23|55147|RNA binding motif protein 23##NM_001077352|RBM23|55147|RNA binding motif protein 23##NM_018107|RBM23|55147|RNA binding motif protein 23	0.997015	0.0	denovo_WM_7:25:0.424	denovo_WM_7:26:0.424
chr14	89897456	89897596	reg1001460.p3	11.022	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-14116	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-18750	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-606533	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	188069	-	BC001787 BX247991 AK298930 AK094740 NM_145231	523534	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	524720	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.196057	0.0	
chr15	72072857	72072976	reg1001426.p2	11.021	+	AK299056 AK303870 BX648716 TSC_hg19_v1_chr15_+_71839574 AY358143	-233336	+	NM_024817 BC140868	-639106	+	BC048128 AL080151 BC039359 NM_001102658 TSC_hg19_v1_chr15_-_71407943	-665045	-	AF121129 NM_014249 NM_016346 AF148128	29996	+	AK097557 NM_001166340	333682	+	NM_001172109 NM_001172110	336302	+	AK299056|THSD4|79875|thrombospondin, type I, domain containing 4##AK303870|THSD4|79875|thrombospondin, type I, domain containing 4##BX648716|THSD4|79875|thrombospondin, type I, domain containing 4##AY358143|THSD4|79875|thrombospondin, type I, domain containing 4##NM_024817|THSD4|79875|thrombospondin, type I, domain containing 4##BC140868|THSD4|79875|thrombospondin, type I, domain containing 4##BC048128|CT62|196993|cancer/testis antigen 62##AL080151|CT62|196993|cancer/testis antigen 62##BC039359|CT62|196993|cancer/testis antigen 62##NM_001102658|CT62|196993|cancer/testis antigen 62##AF121129|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_014249|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_016346|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AF148128|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AK097557|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001166340|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172109|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172110|SENP8|123228|SUMO/sentrin specific peptidase family member 8	1.753101	0.537356	CTCF.p2:-4:0.537	denovo_WM_7:-32:0.981	denovo_WM_7:-51:0.485
chr19	11708028	11708150	reg1001424.p2	11.017	+	BC111014 TSC_hg19_v1_chr19_-_11689776 AK307164 NM_001111035 NM_001111036	-18307	-	AK225912 NM_001111034	-18498	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	-19559	-	NM_145295 BC098416 AK095639 BC006279 AK074846 BC069232	202	+	X51760 BC052597 AK308189 NM_001080493 AK300579 AK303213	141669	-	NM_152355 TSC_hg19_v1_chr19_+_11877884 AK095956	169771	+	BC111014|ACP5|54|acid phosphatase 5, tartrate resistant##AK307164|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111035|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111036|ACP5|54|acid phosphatase 5, tartrate resistant##AK225912|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111034|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant##NM_145295|ZNF627|199692|zinc finger protein 627##BC098416|ZNF627|199692|zinc finger protein 627##AK095639|ZNF627|199692|zinc finger protein 627##BC006279|ZNF627|199692|zinc finger protein 627##AK074846|ZNF627|199692|zinc finger protein 627##BC069232|ZNF627|199692|zinc finger protein 627##X51760|ZNF823|55552|zinc finger protein 823##BC052597|ZNF823|55552|zinc finger protein 823##AK308189|ZNF823|55552|zinc finger protein 823##NM_001080493|ZNF823|55552|zinc finger protein 823##AK300579|ZNF823|55552|zinc finger protein 823##AK303213|ZNF823|55552|zinc finger protein 823##NM_152355|ZNF441|126068|zinc finger protein 441##AK095956|ZNF441|126068|zinc finger protein 441	0.997763	0.0	
chr7	95129802	95129980	reg1001600.p2	11.017	+	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	-14598	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-65530	-	L48516 AF320003 AF329433 CU687094 TSC_hg19_v1_chr7_-_95025687 AK301772 BC070374 AK304282 NM_000940	-104235	-	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	95972	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	272017	+	CU675453 DQ892851 DQ896098 Y17571 AK294629 TSC_hg19_v1_chr7_-_95951381 BC006566 AJ496569 AK000766 AK222864 AF118838 NM_001160210 NM_014251	821511	-	BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##L48516|PON3|5446|paraoxonase 3##AF320003|PON3|5446|paraoxonase 3##AF329433|PON3|5446|paraoxonase 3##BC070374|PON3|5446|paraoxonase 3##AK304282|PON3|5446|paraoxonase 3##NM_000940|PON3|5446|paraoxonase 3##BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##DQ892851|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##DQ896098|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##Y17571|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK294629|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC006566|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AJ496569|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK000766|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK222864|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AF118838|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_001160210|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_014251|SLC25A13|10165|solute carrier family 25, member 13 (citrin)	1.762929	0.0	denovo_WM_7:-2:0.298	denovo_WM_7:-3:0.304	denovo_WM_7:-4:0.269	denovo_WM_7:10:0.236	denovo_WM_7:11:0.347	denovo_WM_7:12:0.289
chr5	154029852	154029978	reg1001932.p1	11.014	+	TSC_hg19_v1_chr5_-_153857823 AF061756 NM_004821	-172093	-	TSC_hg19_v1_chr5_-_153857790 BC021190	-172127	-	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	-204305	+	BC001460 NM_015315 CU674716	62558	+	TSC_hg19_v1_chr5_+_154134891 AB018274	104980	+	TSC_hg19_v1_chr5_+_154135038 AK091465 AX747001	105166	+	AF061756|HAND1|9421|heart and neural crest derivatives expressed 1##NM_004821|HAND1|9421|heart and neural crest derivatives expressed 1##BC021190|HAND1|9421|heart and neural crest derivatives expressed 1##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like##BC001460|LARP1|23367|La ribonucleoprotein domain family, member 1##NM_015315|LARP1|23367|La ribonucleoprotein domain family, member 1##AB018274|LARP1|23367|La ribonucleoprotein domain family, member 1##AK091465|LARP1|23367|La ribonucleoprotein domain family, member 1	0.607498	0.998745	CTCF.p2:17:0.999	denovo_WM_7:-31:0.323
chr2	46414622	46414777	reg1001304.p1	11.013	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-535625	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-576292	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-619571	-	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	109892	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	110276	+	NM_001145051	292004	+	AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375	0.892297	0.0	denovo_WM_7:12:0.388	denovo_WM_7:13:0.311
chr8	96143507	96143674	reg1001683.p2	11.012	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	-106286	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-181933	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-236138	-	TSC_hg19_v1_chr8_+_96145948 NM_024613	2355	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	2418	+	TSC_hg19_v1_chr8_+_96146116 AK023249	2546	+	NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.993792	0.0	denovo_WM_7:-23:0.248	denovo_WM_7:-24:0.248	denovo_WM_7:-25:0.248	denovo_WM_7:-26:0.248
chr10	115611389	115611569	reg1001531.p2	11.008	+	BC037870 FJ236306 NM_182601	-86902	+	AK128811 NM_001193434 NM_001193435 NM_024889	-100267	+	TSC_hg19_v1_chr10_+_115439635 AK301437 AK223489 BC015799 AK300578 U40281 U37448 U67320	-171814	+	D42045 NM_014881 AK307187	2437	-	TSC_hg19_v1_chr10_+_115614419 NM_198514 AK090631 AX746547	2940	+	NM_000684 J03019	192330	+	BC037870|C10orf81|79949|chromosome 10 open reading frame 81##FJ236306|C10orf81|79949|chromosome 10 open reading frame 81##NM_182601|C10orf81|79949|chromosome 10 open reading frame 81##AK128811|C10orf81|79949|chromosome 10 open reading frame 81##NM_001193434|C10orf81|79949|chromosome 10 open reading frame 81##NM_001193435|C10orf81|79949|chromosome 10 open reading frame 81##NM_024889|C10orf81|79949|chromosome 10 open reading frame 81##AK301437|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##AK223489|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##BC015799|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##AK300578|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##U40281|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##U37448|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##U67320|CASP7|840|caspase 7, apoptosis-related cysteine peptidase##D42045|DCLRE1A|9937|DNA cross-link repair 1A##NM_014881|DCLRE1A|9937|DNA cross-link repair 1A##NM_198514|NHLRC2|374354|NHL repeat containing 2##AK090631|NHLRC2|374354|NHL repeat containing 2##NM_000684|ADRB1|153|adrenergic, beta-1-, receptor##J03019|ADRB1|153|adrenergic, beta-1-, receptor	0.998266	0.0	denovo_WM_7:10:0.442	denovo_WM_7:11:0.442
chr1	40185779	40185916	reg1001763.p1	11.007	+	TSC_hg19_v1_chr1_-_40157103 BC030827 AL136591 NM_016257 AK294412 AK312314 AK294813	-28745	-	AF331801 AY028778 BC103879 BC103880 NM_032526	-48138	-	TSC_hg19_v1_chr1_-_40105343 NM_014571	-80502	-	NM_001195007 NM_006112 NM_203456 TSC_hg19_v1_chr1_+_40204553 AK313666 BC008451 AL833576 AF104012 AF104013 AK094660 AK304694 BC107736	18691	+	AK130628 TSC_hg19_v1_chr1_+_40204563 AK293094 BC004898 AB464008 CU678794 DQ160195	18720	+	AK314586 DQ893340 DQ896660 BC030015 AB050193 AK093089 AX747914 BC072388 AY013700 NM_022120	51125	-	BC030827|HPCAL4|51440|hippocalcin like 4##AL136591|HPCAL4|51440|hippocalcin like 4##NM_016257|HPCAL4|51440|hippocalcin like 4##AK294412|HPCAL4|51440|hippocalcin like 4##AK312314|HPCAL4|51440|hippocalcin like 4##AK294813|HPCAL4|51440|hippocalcin like 4##AF331801|NT5C1A|84618|5'-nucleotidase, cytosolic IA##AY028778|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103879|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103880|NT5C1A|84618|5'-nucleotidase, cytosolic IA##NM_032526|NT5C1A|84618|5'-nucleotidase, cytosolic IA##NM_014571|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##NM_001195007|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_006112|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_203456|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK313666|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC008451|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AL833576|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104012|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104013|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK094660|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK304694|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC107736|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK130628|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK293094|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC004898|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##DQ160195|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK314586|OXCT2|64064|3-oxoacid CoA transferase 2##DQ893340|OXCT2|64064|3-oxoacid CoA transferase 2##DQ896660|OXCT2|64064|3-oxoacid CoA transferase 2##BC030015|OXCT2|64064|3-oxoacid CoA transferase 2##AB050193|OXCT2|64064|3-oxoacid CoA transferase 2##AK093089|OXCT2|64064|3-oxoacid CoA transferase 2##BC072388|OXCT2|64064|3-oxoacid CoA transferase 2##AY013700|OXCT2|64064|3-oxoacid CoA transferase 2##NM_022120|OXCT2|64064|3-oxoacid CoA transferase 2	0.999015	0.980977	CTCF.p2:28:0.981	denovo_WM_7:-55:0.351	denovo_WM_7:-56:0.492
chr3	186848594	186848727	reg1001729.p1	11.007	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-108988	+	U67847 TSC_hg19_v1_chr3_+_186714361	-134312	+	X17247 TSC_hg19_v1_chr3_+_186648632	-200083	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	8596	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	66682	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	160979	-	AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)	0.486369	0.0	denovo_WM_7:-3:0.437
chr10	111974484	111974664	reg1000464.p2	11.004	+	BC012907 NM_001008541	-4586	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-7215	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-206607	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	11247	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	90019	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	90126	-	BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1	1.951782	0.0	denovo_WM_7:35:0.315	denovo_WM_7:36:0.315	denovo_WM_7:37:0.315	denovo_WM_7:66:0.956
chr6	108670016	108670160	reg1001159.p1	11.002	+	TSC_hg19_v1_chr6_+_108616194 AF520418 BC018445 NM_145315	-53949	+	TSC_hg19_v1_chr6_-_108582316 NM_003795 NM_152827	-87703	-	TSC_hg19_v1_chr6_-_108582245 BC015179 BC014580 AK289476	-87850	-	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	210935	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	211987	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	212169	+	AF520418|LACE1|246269|lactation elevated 1##BC018445|LACE1|246269|lactation elevated 1##NM_145315|LACE1|246269|lactation elevated 1##NM_003795|SNX3|8724|sorting nexin 3##NM_152827|SNX3|8724|sorting nexin 3##BC015179|SNX3|8724|sorting nexin 3##BC014580|SNX3|8724|sorting nexin 3##AK289476|SNX3|8724|sorting nexin 3##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3	0.0	0.0	
chr17	46429322	46429493	reg1001466.p1	11.000	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-244255	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-244422	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-250586	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	78131	-	TSC_hg19_v1_chr17_-_46507604 BC039040	78210	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	178864	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	2.913792	0.035676	denovo_WM_7:13:0.463	denovo_WM_7:44:0.779	denovo_WM_7:-88:0.900
chr8	96104330	96104470	reg1001619.p1	10.998	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	-67096	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-142743	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-196948	-	TSC_hg19_v1_chr8_+_96145948 NM_024613	41545	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	41608	+	TSC_hg19_v1_chr8_+_96146116 AK023249	41736	+	NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.997178	0.0	denovo_WM_7:19:0.976
chr11	117327275	117327432	reg1001856.p1	10.997	+	AK302991 BC000602 TSC_hg19_v1_chr11_+_117198865 AK303067	-128522	+	TSC_hg19_v1_chr11_+_117198594 BX648682 NM_014956 BC054015	-128769	+	TSC_hg19_v1_chr11_-_117186973 AF324837 AB032975 AF201468 AF190725 BC036084 AK075049 BC065492 NM_012104 NM_138971 NM_138972 NM_138973	-140373	-	AB385430 AF304304 AF304305 TSC_hg19_v1_chr11_-_117667909 AF334384 AB032958	340500	-	TSC_hg19_v1_chr11_-_117667943 AF491813 NM_020693	340606	-	DQ786191 U50743 AF241236 AK296195 TSC_hg19_v1_chr11_-_117695460 AK096069 BC013289 NM_001680	368081	-	AK302991|CEP164|22897|centrosomal protein 164kDa##BC000602|CEP164|22897|centrosomal protein 164kDa##AK303067|CEP164|22897|centrosomal protein 164kDa##BX648682|CEP164|22897|centrosomal protein 164kDa##NM_014956|CEP164|22897|centrosomal protein 164kDa##BC054015|CEP164|22897|centrosomal protein 164kDa##AF324837|BACE1|23621|beta-site APP-cleaving enzyme 1##AB032975|BACE1|23621|beta-site APP-cleaving enzyme 1##AF201468|BACE1|23621|beta-site APP-cleaving enzyme 1##AF190725|BACE1|23621|beta-site APP-cleaving enzyme 1##BC036084|BACE1|23621|beta-site APP-cleaving enzyme 1##AK075049|BACE1|23621|beta-site APP-cleaving enzyme 1##BC065492|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_012104|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138971|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138972|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138973|BACE1|23621|beta-site APP-cleaving enzyme 1##AF304304|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF304305|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF334384|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AB032958|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF491813|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##NM_020693|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##DQ786191|FXYD2|486|FXYD domain containing ion transport regulator 2##U50743|FXYD2|486|FXYD domain containing ion transport regulator 2##AF241236|FXYD2|486|FXYD domain containing ion transport regulator 2##AK096069|FXYD2|486|FXYD domain containing ion transport regulator 2##BC013289|FXYD2|486|FXYD domain containing ion transport regulator 2##NM_001680|FXYD2|486|FXYD domain containing ion transport regulator 2	0.993301	0.0	denovo_WM_7:42:0.706
chr11	58343328	58343492	reg1001871.p1	10.993	+	BC007490 BC019035 TSC_hg19_v1_chr11_-_58343330 AK313306 AK223165 AK301093 AF062075 NM_004811	-62	-	NM_001005218	-67833	-	BC136947 BC136948 NM_001004733	-135765	-	BC034230 TSC_hg19_v1_chr11_-_58345666 AK300955 NM_001143995 AK299264	2251	-	TSC_hg19_v1_chr11_+_58346591 BC051743 NM_001197051 NM_053023	3173	+	TSC_hg19_v1_chr11_+_58346697 AB056107 AB057443 CU690828	3285	+	BC007490|LPXN|9404|leupaxin##BC019035|LPXN|9404|leupaxin##AK313306|LPXN|9404|leupaxin##AK223165|LPXN|9404|leupaxin##AK301093|LPXN|9404|leupaxin##AF062075|LPXN|9404|leupaxin##NM_004811|LPXN|9404|leupaxin##NM_001005218|OR5B21|219968|olfactory receptor, family 5, subfamily B, member 21##BC136947|OR5B12|390191|olfactory receptor, family 5, subfamily B, member 12##BC136948|OR5B12|390191|olfactory receptor, family 5, subfamily B, member 12##NM_001004733|OR5B12|390191|olfactory receptor, family 5, subfamily B, member 12##BC034230|LPXN|9404|leupaxin##AK300955|LPXN|9404|leupaxin##NM_001143995|LPXN|9404|leupaxin##AK299264|LPXN|9404|leupaxin##BC051743|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_001197051|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_053023|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB056107|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB057443|ZFP91-CNTF|386607|ZFP91-CNTF readthrough	0.997689	0.0	denovo_WM_7:10:0.710	denovo_WM_7:11:0.275
chr17	32705815	32705952	reg1001239.p1	10.992	+	AB528767 BC105073 BC105075 M57502 AK312183 NM_002981	-15668	-	NM_005408 U59808 AJ001634 BC008621 U46767 X98306 AB463483 CU679005 DQ891497 DQ894688 BT007385 CR450337 Z77650	-22352	+	Y16645 NM_005623	-59822	+	BC133004 BC136710 BC142651 AK126768 NM_207454	200469	-	NM_207313	201884	+	CU693272 AK301773 TSC_hg19_v1_chr17_-_33288425 AK225729 BC026125 AK225728 D78333	582552	-	BC105073|CCL1|6346|chemokine (C-C motif) ligand 1##BC105075|CCL1|6346|chemokine (C-C motif) ligand 1##M57502|CCL1|6346|chemokine (C-C motif) ligand 1##AK312183|CCL1|6346|chemokine (C-C motif) ligand 1##NM_002981|CCL1|6346|chemokine (C-C motif) ligand 1##NM_005408|CCL13|6357|chemokine (C-C motif) ligand 13##U59808|CCL13|6357|chemokine (C-C motif) ligand 13##AJ001634|CCL13|6357|chemokine (C-C motif) ligand 13##BC008621|CCL13|6357|chemokine (C-C motif) ligand 13##U46767|CCL13|6357|chemokine (C-C motif) ligand 13##X98306|CCL13|6357|chemokine (C-C motif) ligand 13##DQ891497|CCL13|6357|chemokine (C-C motif) ligand 13##DQ894688|CCL13|6357|chemokine (C-C motif) ligand 13##BT007385|CCL13|6357|chemokine (C-C motif) ligand 13##CR450337|CCL13|6357|chemokine (C-C motif) ligand 13##Z77650|CCL13|6357|chemokine (C-C motif) ligand 13##Y16645|CCL8|6355|chemokine (C-C motif) ligand 8##NM_005623|CCL8|6355|chemokine (C-C motif) ligand 8##BC133004|C17orf102|400591|chromosome 17 open reading frame 102##BC136710|C17orf102|400591|chromosome 17 open reading frame 102##BC142651|C17orf102|400591|chromosome 17 open reading frame 102##AK126768|C17orf102|400591|chromosome 17 open reading frame 102##NM_207454|C17orf102|400591|chromosome 17 open reading frame 102##NM_207313|TMEM132E|124842|transmembrane protein 132E##AK301773|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225729|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC026125|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225728|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##D78333|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)	0.985004	0.0	denovo_WM_7:-16:0.394	denovo_WM_7:-17:0.254	denovo_WM_7:-19:0.322
chr5	17318785	17318903	reg1001273.p1	10.991	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-101004	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-101232	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-382459	-	AK295087 BC031051 NM_001167667 NM_004934	2669478	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4140765	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4140804	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.993074	0.0	
chr15	40882110	40882290	reg1001433.p1	10.990	+	TSC_hg19_v1_chr15_+_40861536 AK055971 AK301706 NM_152260 CU677781	-20616	+	TSC_hg19_v1_chr15_+_40861527 AK293145 BC016967	-20672	+	BC007697 TSC_hg19_v1_chr15_+_40861516	-20683	+	AF173994 TSC_hg19_v1_chr15_+_40886230 BC043597	4025	+	TSC_hg19_v1_chr15_+_40886474 AB022190 BC014306 NM_144508 NM_170589 AK307605 AK307996 AF248041 AF461041 BC029373	4264	+	TSC_hg19_v1_chr15_-_40987295 AK125393	105095	-	AK055971|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK301706|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##NM_152260|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK293145|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##BC016967|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##BC007697|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AF173994|CASC5|57082|cancer susceptibility candidate 5##BC043597|CASC5|57082|cancer susceptibility candidate 5##AB022190|CASC5|57082|cancer susceptibility candidate 5##BC014306|CASC5|57082|cancer susceptibility candidate 5##NM_144508|CASC5|57082|cancer susceptibility candidate 5##NM_170589|CASC5|57082|cancer susceptibility candidate 5##AK307605|CASC5|57082|cancer susceptibility candidate 5##AK307996|CASC5|57082|cancer susceptibility candidate 5##AF248041|CASC5|57082|cancer susceptibility candidate 5##AF461041|CASC5|57082|cancer susceptibility candidate 5##BC029373|CASC5|57082|cancer susceptibility candidate 5##AK125393|LOC100505648|100505648|uncharacterized LOC100505648	1.116405	0.593557	CTCF.p2:-41:0.594
chr4	87995374	87995554	reg1000623.p4	10.990	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-27213	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-67143	+	TSC_hg19_v1_chr4_+_87857481 L13743	-137981	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	146198	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	248561	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	316807	-	AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11	0.982463	0.0	denovo_WM_7:0:0.888
chr19	8347505	8347645	reg1002034.p2	10.989	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-73327	+	AB384635 AB053450 BC153882 NM_032447	-135200	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-229628	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	25634	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	38682	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	38711	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.196204	0.0	
chr2	74679422	74679572	reg1001656.p1	10.985	+	TSC_hg19_v1_chr2_-_74669065 NM_001015055	-10432	-	TSC_hg19_v1_chr2_-_74669029 AF049227 AK310036	-10461	-	BC004558 TSC_hg19_v1_chr2_-_74669019 AK308519	-10483	-	NM_031288 TSC_hg19_v1_chr2_+_74682219 AK295889 AK055333 AK295901 BC039617 BC064425 AB054538 BC050666	2707	+	NM_012477 TSC_hg19_v1_chr2_+_74685564 BC010012 BC071626 AK094297 AK315745 BC071850 BC064482 AF087888 AB464438 CU679571 DQ893075 EU176763	6130	+	BC117250 BC117252 BC143934 TSC_hg19_v1_chr2_-_74692487 AK292553 AK304655	12957	-	NM_001015055|RTKN|6242|rhotekin##AF049227|RTKN|6242|rhotekin##BC004558|RTKN|6242|rhotekin##AK308519|RTKN|6242|rhotekin##NM_031288|INO80B|83444|INO80 complex subunit B##AK295889|INO80B|83444|INO80 complex subunit B##AK295901|INO80B|83444|INO80 complex subunit B##BC039617|INO80B|83444|INO80 complex subunit B##BC064425|INO80B|83444|INO80 complex subunit B##AB054538|INO80B|83444|INO80 complex subunit B##BC050666|INO80B|83444|INO80 complex subunit B##NM_012477|WBP1|23559|WW domain binding protein 1##BC010012|WBP1|23559|WW domain binding protein 1##BC071626|WBP1|23559|WW domain binding protein 1##AK094297|WBP1|23559|WW domain binding protein 1##AK315745|WBP1|23559|WW domain binding protein 1##BC071850|WBP1|23559|WW domain binding protein 1##BC064482|WBP1|23559|WW domain binding protein 1##AF087888|WBP1|23559|WW domain binding protein 1##DQ893075|WBP1|23559|WW domain binding protein 1##EU176763|WBP1|23559|WW domain binding protein 1##BC117250|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117252|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC143934|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK292553|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK304655|MOGS|7841|mannosyl-oligosaccharide glucosidase	0.0	0.0	
chr4	69920737	69920917	reg1001478.p1	10.983	+	NM_001075 NM_001144767	-34715	-	HQ258456 BC130533 AY358727 AY542891 NM_024743	-103334	-	TSC_hg19_v1_chr4_+_69681710 BC113649 AK222839 AK222872 AK292738 AK298432 NM_001075 NM_001144767 X63359	-239109	+	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	41387	+	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	159630	-	AF177272 AF177273 AF177274 NM_001207004 NM_053039 AB451456	225390	+	NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##HQ258456|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC130533|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY358727|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY542891|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##NM_024743|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AF177272|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177273|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177274|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_001207004|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_053039|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AB451456|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28	1.996332	0.0	denovo_WM_7:-2:0.398	denovo_WM_7:-3:0.311	denovo_WM_7:11:0.245	denovo_WM_7:12:0.333	denovo_WM_7:15:0.332
chr15	64719144	64719324	reg1001669.p1	10.981	+	NM_016213 TSC_hg19_v1_chr15_+_64680041 BC012448 AK314319 AB464298 EU446746	-39198	+	AF529370 AY598324 AB463081 CU675545 BC005832 D14657 BC007101 TSC_hg19_v1_chr15_-_64673641 AK290748 BC016782 NM_001029989 NM_014736	-45599	-	TSC_hg19_v1_chr15_-_64648373 AK225960 NM_022048	-70834	-	TSC_hg19_v1_chr15_+_64752786 BC142647	33625	+	NM_015042	72384	+	AB056456 TSC_hg19_v1_chr15_+_64885153	165919	+	NM_016213|TRIP4|9325|thyroid hormone receptor interactor 4##BC012448|TRIP4|9325|thyroid hormone receptor interactor 4##AK314319|TRIP4|9325|thyroid hormone receptor interactor 4##EU446746|TRIP4|9325|thyroid hormone receptor interactor 4##AF529370|KIAA0101|9768|KIAA0101##AY598324|KIAA0101|9768|KIAA0101##BC005832|KIAA0101|9768|KIAA0101##D14657|KIAA0101|9768|KIAA0101##BC007101|KIAA0101|9768|KIAA0101##AK290748|KIAA0101|9768|KIAA0101##BC016782|KIAA0101|9768|KIAA0101##NM_001029989|KIAA0101|9768|KIAA0101##NM_014736|KIAA0101|9768|KIAA0101##AK225960|CSNK1G1|53944|casein kinase 1, gamma 1##NM_022048|CSNK1G1|53944|casein kinase 1, gamma 1##BC142647|ZNF609|23060|zinc finger protein 609##NM_015042|ZNF609|23060|zinc finger protein 609	0.998967	0.191473	denovo_WM_7:-23:0.600
chr17	65814412	65814578	reg1001660.p1	10.981	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	-100445	+	BC007905 NM_012417 NM_181671	-440572	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-440907	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	7207	+	AK293224 TSC_hg19_v1_chr17_+_65822221	7722	+	TSC_hg19_v1_chr17_+_65822242 AY282495	7754	+	BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor##AY282495|BPTF|2186|bromodomain PHD finger transcription factor	1.907564	0.0	denovo_WM_7:26:0.533
chr14	91529513	91529660	reg1001570.p1	10.978	+	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	-2616	-	TSC_hg19_v1_chr14_-_91526731 CU677851	-2832	-	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-246821	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	50819	+	TSC_hg19_v1_chr14_+_91580472 AK023200	50926	+	AK123532 TSC_hg19_v1_chr14_+_91580717 BC065558 BX248782 AK091394 AK022564	51163	+	AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159##AK023200|C14orf159|80017|chromosome 14 open reading frame 159##AK123532|C14orf159|80017|chromosome 14 open reading frame 159##BC065558|C14orf159|80017|chromosome 14 open reading frame 159##BX248782|C14orf159|80017|chromosome 14 open reading frame 159##AK091394|C14orf159|80017|chromosome 14 open reading frame 159##AK022564|C14orf159|80017|chromosome 14 open reading frame 159	0.999145	0.0	denovo_WM_7:15:0.741
chr21	30720725	30720876	reg1001597.p2	10.976	+	AF026199 NM_206866	-49064	+	TSC_hg19_v1_chr21_+_30671242 AK313791 BC063307	-49559	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	-49580	+	L19058 NM_000830 NM_175611 AK296404 BC028238	591489	-	BC101503 BC101505 NM_012131 AY358094	818206	-	AB590283 CU676754 DQ892002 DQ895192 BC058004 AY358707 BC020866 AK223512 AK022269 NM_199328	867555	-	AF026199|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_206866|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AK313791|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##BC063307|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##L19058|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_000830|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_175611|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##AK296404|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC028238|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC101503|CLDN17|26285|claudin 17##BC101505|CLDN17|26285|claudin 17##NM_012131|CLDN17|26285|claudin 17##AY358094|CLDN17|26285|claudin 17##DQ892002|CLDN8|9073|claudin 8##DQ895192|CLDN8|9073|claudin 8##BC058004|CLDN8|9073|claudin 8##AY358707|CLDN8|9073|claudin 8##BC020866|CLDN8|9073|claudin 8##AK223512|CLDN8|9073|claudin 8##AK022269|CLDN8|9073|claudin 8##NM_199328|CLDN8|9073|claudin 8	0.935765	0.0	denovo_WM_7:-8:0.825
chrX	75368955	75369135	reg1000024.p1	10.976	+	BC093964 BC111949 AF490509 AK094624 NM_138703	-364017	-	TSC_hg19_v1_chrX_-_74743299 NM_001146256 NM_001146257 NM_144969	-625728	-	AY358786 TSC_hg19_v1_chrX_-_74743270	-625779	-	AY927529 AY927616 BC001220 NM_016500 TSC_hg19_v1_chrX_+_75392896 AF151079 BC051894	23794	+	TSC_hg19_v1_chrX_+_75392955 CU674612	23910	+	NM_020932 TSC_hg19_v1_chrX_+_75648083 AB046807 AF490507 AK291270 BC050588	279059	+	BC093964|MAGEE2|139599|melanoma antigen family E, 2##BC111949|MAGEE2|139599|melanoma antigen family E, 2##AF490509|MAGEE2|139599|melanoma antigen family E, 2##AK094624|MAGEE2|139599|melanoma antigen family E, 2##NM_138703|MAGEE2|139599|melanoma antigen family E, 2##NM_001146256|ZDHHC15|158866|zinc finger, DHHC-type containing 15##NM_001146257|ZDHHC15|158866|zinc finger, DHHC-type containing 15##NM_144969|ZDHHC15|158866|zinc finger, DHHC-type containing 15##AY358786|ZDHHC15|158866|zinc finger, DHHC-type containing 15##AY927616|CXorf26|51260|chromosome X open reading frame 26##BC001220|CXorf26|51260|chromosome X open reading frame 26##NM_016500|CXorf26|51260|chromosome X open reading frame 26##BC051894|CXorf26|51260|chromosome X open reading frame 26##NM_020932|MAGEE1|57692|melanoma antigen family E, 1##AB046807|MAGEE1|57692|melanoma antigen family E, 1##AF490507|MAGEE1|57692|melanoma antigen family E, 1##AK291270|MAGEE1|57692|melanoma antigen family E, 1##BC050588|MAGEE1|57692|melanoma antigen family E, 1	0.998429	0.0	
chr11	47534929	47535051	reg1001634.p1	10.975	+	BC031079 NM_198700	-18918	-	AK304430 AJ007988 DQ893717 AF248648 NM_001025596 NM_001172640 AF267533 AF267534	-24443	-	AK310002 BC004196 Z33905 AF449218 NM_005055 NM_032645	-64282	-	AB210019 NM_001172639	10549	-	TSC_hg19_v1_chr11_-_47574683 BC036782 U63289	39653	-	TSC_hg19_v1_chr11_-_47574804 NM_006560	39795	-	BC031079|CELF1|10658|CUGBP, Elav-like family member 1##NM_198700|CELF1|10658|CUGBP, Elav-like family member 1##AK304430|CELF1|10658|CUGBP, Elav-like family member 1##AJ007988|CELF1|10658|CUGBP, Elav-like family member 1##DQ893717|CELF1|10658|CUGBP, Elav-like family member 1##AF248648|CELF1|10658|CUGBP, Elav-like family member 1##NM_001025596|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172640|CELF1|10658|CUGBP, Elav-like family member 1##AF267533|CELF1|10658|CUGBP, Elav-like family member 1##AF267534|CELF1|10658|CUGBP, Elav-like family member 1##AK310002|RAPSN|5913|receptor-associated protein of the synapse##BC004196|RAPSN|5913|receptor-associated protein of the synapse##Z33905|RAPSN|5913|receptor-associated protein of the synapse##AF449218|RAPSN|5913|receptor-associated protein of the synapse##NM_005055|RAPSN|5913|receptor-associated protein of the synapse##NM_032645|RAPSN|5913|receptor-associated protein of the synapse##AB210019|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172639|CELF1|10658|CUGBP, Elav-like family member 1##BC036782|CELF1|10658|CUGBP, Elav-like family member 1##U63289|CELF1|10658|CUGBP, Elav-like family member 1##NM_006560|CELF1|10658|CUGBP, Elav-like family member 1	0.989908	0.0	denovo_WM_7:32:0.967
chr15	79231463	79231616	reg1001487.p1	10.974	+	TSC_hg19_v1_chr15_+_79165343 AK300789 BC067826 AB385578 CU692730 DQ892602 DQ895837 AK310181	-66176	+	TSC_hg19_v1_chr15_+_79165314 AK310702 BC141840 AF070664 AF167173 AK310592 AL137697 AF109188 AF161546	-66220	+	TSC_hg19_v1_chr15_+_79165283 AK098485 AF218011 AF100615 AY148481 AK296650 BC002936 BC022845	-66292	+	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	5796	-	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	5860	-	NM_153815 S62035	66462	-	AK300789|MORF4L1|10933|mortality factor 4 like 1##BC067826|MORF4L1|10933|mortality factor 4 like 1##DQ892602|MORF4L1|10933|mortality factor 4 like 1##DQ895837|MORF4L1|10933|mortality factor 4 like 1##AK310181|MORF4L1|10933|mortality factor 4 like 1##AK310702|MORF4L1|10933|mortality factor 4 like 1##BC141840|MORF4L1|10933|mortality factor 4 like 1##AF070664|MORF4L1|10933|mortality factor 4 like 1##AF167173|MORF4L1|10933|mortality factor 4 like 1##AK310592|MORF4L1|10933|mortality factor 4 like 1##AL137697|MORF4L1|10933|mortality factor 4 like 1##AF109188|MORF4L1|10933|mortality factor 4 like 1##AF161546|MORF4L1|10933|mortality factor 4 like 1##AK098485|MORF4L1|10933|mortality factor 4 like 1##AF218011|MORF4L1|10933|mortality factor 4 like 1##AF100615|MORF4L1|10933|mortality factor 4 like 1##AY148481|MORF4L1|10933|mortality factor 4 like 1##AK296650|MORF4L1|10933|mortality factor 4 like 1##BC002936|MORF4L1|10933|mortality factor 4 like 1##BC022845|MORF4L1|10933|mortality factor 4 like 1##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1	0.997431	0.0	denovo_WM_7:-13:0.903
chr2	200805312	200805430	reg1001647.p1	10.973	+	TSC_hg19_v1_chr2_+_200776033 BC036456 AK303210	-29335	+	TSC_hg19_v1_chr2_+_200776015 AK096292	-29357	+	TSC_hg19_v1_chr2_+_200775981 NM_153689	-29394	+	TSC_hg19_v1_chr2_+_200820311 AK026208 NM_024520	14785	+	TSC_hg19_v1_chr2_-_200820204 HQ258367 AK298977 BC025758 AK095272 BC132835 BC136837 BC144420 BX648265 AK293064	14841	-	BX647677 NM_001039693	15087	-	BC036456|C2orf69|205327|chromosome 2 open reading frame 69##AK096292|C2orf69|205327|chromosome 2 open reading frame 69##NM_153689|C2orf69|205327|chromosome 2 open reading frame 69##AK026208|C2orf47|79568|chromosome 2 open reading frame 47##NM_024520|C2orf47|79568|chromosome 2 open reading frame 47##HQ258367|TYW5|129450|tRNA-yW synthesizing protein 5##AK298977|TYW5|129450|tRNA-yW synthesizing protein 5##BC025758|TYW5|129450|tRNA-yW synthesizing protein 5##AK095272|TYW5|129450|tRNA-yW synthesizing protein 5##BC132835|TYW5|129450|tRNA-yW synthesizing protein 5##BC136837|TYW5|129450|tRNA-yW synthesizing protein 5##BC144420|TYW5|129450|tRNA-yW synthesizing protein 5##BX648265|TYW5|129450|tRNA-yW synthesizing protein 5##AK293064|TYW5|129450|tRNA-yW synthesizing protein 5##BX647677|TYW5|129450|tRNA-yW synthesizing protein 5##NM_001039693|TYW5|129450|tRNA-yW synthesizing protein 5	0.994923	0.354085	CTCF.p2:16:0.354	denovo_WM_7:-24:0.726
chr2	172263869	172264011	reg1001886.p1	10.972	+	AK090779 NM_001136554	-176117	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-246441	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-246844	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	26586	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	26822	+	TSC_hg19_v1_chr2_+_172290824 CR933646	26871	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	0.0	0.0	
chr19	2043950	2044083	reg1001655.p1	10.970	+	TSC_hg19_v1_chr19_-_2042036 AK001730	-1966	-	TSC_hg19_v1_chr19_-_2041865 AK092536	-2120	-	AL137615 TSC_hg19_v1_chr19_-_2039474 AK024347 AK097012	-4515	-	AL137565 TSC_hg19_v1_chr19_-_2046250	2225	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	7217	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	41227	-	AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK092536|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137615|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK024347|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK097012|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A	1.98507	0.0	denovo_WM_7:-18:0.978	denovo_WM_7:-33:0.977
chr9	6750399	6750536	reg1001613.p1	10.968	+	AK310439 NM_001146696	-29605	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-104840	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-337062	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	7200	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	7572	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1049248	-	AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123	0.997239	0.0	denovo_WM_7:-20:0.841
chr4	144434123	144434284	reg1001580.p1	10.966	+	NM_002039 NM_207123 AK289767 BC064848	-176188	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	-328078	+	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	-328139	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	525	+	AB384709 TSC_hg19_v1_chr4_+_144435139	911	+	TSC_hg19_v1_chr4_+_144480613 AX721285 AX721289 BC025996	46413	+	NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC025996|GUSBP5|441046|glucuronidase, beta pseudogene 5	2.954663	0.0	denovo_WM_7:-1:0.266	denovo_WM_7:-2:0.418	denovo_WM_7:-3:0.298	denovo_WM_7:-31:0.856	denovo_WM_7:-46:0.972
chr2	68614839	68614995	reg1001668.p2	10.960	+	TSC_hg19_v1_chr2_+_68592449 DQ893586 DQ894896 CU676266 AB528939 CR542056 CR542079	-22460	+	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	-22545	+	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	-67817	-	BC089423 DQ904332 NM_001024680 TSC_hg19_v1_chr2_-_68694427	79493	-	TSC_hg19_v1_chr2_+_68694716 AK290841 NM_173545 AK308186 BC041144 CU691972	79847	+	AB084080 AF506287 AY089976 BC100960 EF577399 NM_138964	258036	+	DQ893586|PLEK|5341|pleckstrin##DQ894896|PLEK|5341|pleckstrin##CR542056|PLEK|5341|pleckstrin##CR542079|PLEK|5341|pleckstrin##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##BC089423|FBXO48|554251|F-box protein 48##DQ904332|FBXO48|554251|F-box protein 48##NM_001024680|FBXO48|554251|F-box protein 48##AK290841|APLF|200558|aprataxin and PNKP like factor##NM_173545|APLF|200558|aprataxin and PNKP like factor##AK308186|APLF|200558|aprataxin and PNKP like factor##BC041144|APLF|200558|aprataxin and PNKP like factor##AB084080|PROKR1|10887|prokineticin receptor 1##AF506287|PROKR1|10887|prokineticin receptor 1##AY089976|PROKR1|10887|prokineticin receptor 1##BC100960|PROKR1|10887|prokineticin receptor 1##EF577399|PROKR1|10887|prokineticin receptor 1##NM_138964|PROKR1|10887|prokineticin receptor 1	0.993072	0.0	denovo_WM_7:0:0.925
chr11	121408818	121408956	reg1001781.p1	10.957	+	TSC_hg19_v1_chr11_+_121323112 AK309523	-85712	+	TSC_hg19_v1_chr11_+_121323026 NM_003105 Y08110 BC137171 AB463277	-85938	+	TSC_hg19_v1_chr11_+_121163523 BC050427 NM_001024956 BC012333	-245333	+	TSC_hg19_v1_chr11_+_121461071 AK294404	52211	+	BC130361 BC130363 AF303179 NM_001001786	577974	-	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	1117660	+	AK309523|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##NM_003105|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##Y08110|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC137171|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC050427|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_001024956|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##BC012333|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK294404|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC130361|BLID|414899|BH3-like motif containing, cell death inducer##BC130363|BLID|414899|BH3-like motif containing, cell death inducer##AF303179|BLID|414899|BH3-like motif containing, cell death inducer##NM_001001786|BLID|414899|BH3-like motif containing, cell death inducer##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B	0.994989	0.0	denovo_WM_7:11:0.708
chr6	80578004	80578112	reg1001555.p1	10.955	+	TSC_hg19_v1_chr6_+_80341019 AF340151 NM_031469 BC109043 BC109044 AK311757 BC040489 AK074506 BC052987 BC060799 BC070059 AJ297972	-236984	+	TSC_hg19_v1_chr6_-_80247114 AK299314 BX648161 BC050327 NM_001122769 NM_181714	-330929	-	TSC_hg19_v1_chr6_-_79944400 AK315391 AY043282 NM_001201362 NM_001201363 NM_004242 NM_138730	-633633	-	NM_001243308	2078	-	TSC_hg19_v1_chr6_-_80656870 CU691582 DQ891229 AF277094 BC038506 AY037298 AK310625 AK312511 AK055277 DQ426871 NM_022726	79034	-	NM_001166691 NM_003318 TSC_hg19_v1_chr6_+_80714370 AX775733 BC032858 BC000633 AK292460	136294	+	AF340151|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_031469|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109043|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109044|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK311757|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC040489|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK074506|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC052987|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC060799|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC070059|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AJ297972|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK299314|LCA5|167691|Leber congenital amaurosis 5##BX648161|LCA5|167691|Leber congenital amaurosis 5##BC050327|LCA5|167691|Leber congenital amaurosis 5##NM_001122769|LCA5|167691|Leber congenital amaurosis 5##NM_181714|LCA5|167691|Leber congenital amaurosis 5##AK315391|HMGN3|9324|high mobility group nucleosomal binding domain 3##AY043282|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201362|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201363|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_004242|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_138730|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001243308|C6orf7|89758|chromosome 6 open reading frame 7##DQ891229|ELOVL4|6785|ELOVL fatty acid elongase 4##AF277094|ELOVL4|6785|ELOVL fatty acid elongase 4##BC038506|ELOVL4|6785|ELOVL fatty acid elongase 4##AY037298|ELOVL4|6785|ELOVL fatty acid elongase 4##AK310625|ELOVL4|6785|ELOVL fatty acid elongase 4##AK312511|ELOVL4|6785|ELOVL fatty acid elongase 4##AK055277|ELOVL4|6785|ELOVL fatty acid elongase 4##DQ426871|ELOVL4|6785|ELOVL fatty acid elongase 4##NM_022726|ELOVL4|6785|ELOVL fatty acid elongase 4##NM_001166691|TTK|7272|TTK protein kinase##NM_003318|TTK|7272|TTK protein kinase##AX775733|TTK|7272|TTK protein kinase##BC032858|TTK|7272|TTK protein kinase##BC000633|TTK|7272|TTK protein kinase##AK292460|TTK|7272|TTK protein kinase	0.998207	0.635844	CTCF.p2:-22:0.636	denovo_WM_7:24:0.902
chr12	93221768	93221912	reg1001529.p1	10.954	+	NM_001004330 AK128530	-91553	+	NM_001037671 NM_001178097	-125222	+	AJ845168 NM_001025232	-399917	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	101098	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	101203	-	TSC_hg19_v1_chr12_-_93323097 NM_003566	101258	-	NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##NM_003566|EEA1|8411|early endosome antigen 1	0.998509	0.0	denovo_WM_7:9:0.550
chr6	22335186	22335331	reg1001157.p1	10.952	+	X54394 X54393 GQ305133 M58594 NM_001163558	-32211	-	BC015850 NM_000948	-37529	-	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-668599	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	234467	+	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	1791172	+	AF181722 NM_181337	2021872	+	X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1	0.999661	0.0	denovo_WM_7:-13:0.425	denovo_WM_7:-14:0.425
chr19	12886534	12886654	reg1001054.p2	10.950	+	TSC_hg19_v1_chr19_-_12886422 NM_001100176 NM_013312	-167	-	CU680326 DQ891339 DQ893360 DQ894521 DQ896679 AB527820 TSC_hg19_v1_chr19_-_12886342 AF044924 BC012443	-267	-	AF440756 AY515705 NM_017682 AK000139 AK225232	-23156	+	TSC_hg19_v1_chr19_+_12902286 DQ650707	15696	+	AK222532 TSC_hg19_v1_chr19_+_12902299 AK313737 BC110372 BC004250 BC009465 BC009466 NM_002229 X51345	15719	+	BC000452 BC003022 BC064138 TSC_hg19_v1_chr19_-_12912615 Z22548 AK289485 AK293957 BC039428 AK022395 NM_005809 NM_181738	26070	-	NM_001100176|HOOK2|29911|hook homolog 2 (Drosophila)##NM_013312|HOOK2|29911|hook homolog 2 (Drosophila)##DQ891339|HOOK2|29911|hook homolog 2 (Drosophila)##DQ893360|HOOK2|29911|hook homolog 2 (Drosophila)##DQ894521|HOOK2|29911|hook homolog 2 (Drosophila)##DQ896679|HOOK2|29911|hook homolog 2 (Drosophila)##AF044924|HOOK2|29911|hook homolog 2 (Drosophila)##BC012443|HOOK2|29911|hook homolog 2 (Drosophila)##AF440756|BEST2|54831|bestrophin 2##AY515705|BEST2|54831|bestrophin 2##NM_017682|BEST2|54831|bestrophin 2##AK000139|BEST2|54831|bestrophin 2##AK225232|BEST2|54831|bestrophin 2##AK222532|JUNB|3726|jun B proto-oncogene##AK313737|JUNB|3726|jun B proto-oncogene##BC004250|JUNB|3726|jun B proto-oncogene##BC009465|JUNB|3726|jun B proto-oncogene##BC009466|JUNB|3726|jun B proto-oncogene##NM_002229|JUNB|3726|jun B proto-oncogene##X51345|JUNB|3726|jun B proto-oncogene##BC000452|PRDX2|7001|peroxiredoxin 2##BC003022|PRDX2|7001|peroxiredoxin 2##BC064138|PRDX2|7001|peroxiredoxin 2##Z22548|PRDX2|7001|peroxiredoxin 2##AK289485|PRDX2|7001|peroxiredoxin 2##AK293957|PRDX2|7001|peroxiredoxin 2##BC039428|PRDX2|7001|peroxiredoxin 2##AK022395|PRDX2|7001|peroxiredoxin 2##NM_005809|PRDX2|7001|peroxiredoxin 2##NM_181738|PRDX2|7001|peroxiredoxin 2	0.670423	0.342508	
chr19	59000210	59000344	reg1001834.p1	10.950	+	AY280800 TSC_hg19_v1_chr19_+_58987792 AK000633 AY279351 NM_017908 BC017206 AK026153	-12494	+	AK092341 TSC_hg19_v1_chr19_+_58978664	-21610	+	TSC_hg19_v1_chr19_+_58978445 NM_014347 BC007717 AF060503	-21849	+	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	23100	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	30676	-	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	30911	-	AY280800|ZNF446|55663|zinc finger protein 446##AK000633|ZNF446|55663|zinc finger protein 446##AY279351|ZNF446|55663|zinc finger protein 446##NM_017908|ZNF446|55663|zinc finger protein 446##BC017206|ZNF446|55663|zinc finger protein 446##AK026153|ZNF446|55663|zinc finger protein 446##AK092341|ZNF324|25799|zinc finger protein 324##NM_014347|ZNF324|25799|zinc finger protein 324##BC007717|ZNF324|25799|zinc finger protein 324##AF060503|ZNF324|25799|zinc finger protein 324##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45	0.974613	0.0	denovo_WM_7:-52:0.482	denovo_WM_7:-53:0.482
chr6	99842056	99842181	reg1001249.p1	10.948	+	AF193016 BC015634 BC001534 BC063463 CU687730 AB590714 AF351615 AK056955 AL136726 NM_017421	-65	-	BC004869 BC011583 NM_032511	-44588	-	TSC_hg19_v1_chr6_-_99395817 AK313076 BC055010 BC039819 NM_012160	-446291	-	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	7173	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	30696	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	31049	-	AF193016|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC015634|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC001534|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC063463|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AF351615|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AK056955|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AL136726|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##NM_017421|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC004869|C6orf168|84553|chromosome 6 open reading frame 168##BC011583|C6orf168|84553|chromosome 6 open reading frame 168##NM_032511|C6orf168|84553|chromosome 6 open reading frame 168##AK313076|FBXL4|26235|F-box and leucine-rich repeat protein 4##BC055010|FBXL4|26235|F-box and leucine-rich repeat protein 4##BC039819|FBXL4|26235|F-box and leucine-rich repeat protein 4##NM_012160|FBXL4|26235|F-box and leucine-rich repeat protein 4##AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein	0.999899	0.0	
chr10	119517606	119517697	reg1001071.p1	10.946	+	TSC_hg19_v1_chr10_+_119302713 AB463605	-214908	+	AF301598 NM_001165924 NM_004098	-215696	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-215735	-	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	288393	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	288779	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	584173	-	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A	1.063016	0.990577	CTCF.p2:20:0.991
chr3	151045514	151045629	reg1001276.p2	10.944	+	AF237763 BC112941 BC117565 AB031548 BC132888 BC132890 AK027784 NM_023915	-10997	-	BC034989 D13626 NM_014879	-49380	-	AK289617 NM_001081455	-78622	-	BC041116 JF810883 BC029363 AK313208 NM_176894	1751	-	AF313449 AF321815 NM_176876	12940	-	AK292096 AK303714 AK316575 TSC_hg19_v1_chr3_-_151102542 BC017898 NM_022788	56973	-	AF237763|GPR87|53836|G protein-coupled receptor 87##BC112941|GPR87|53836|G protein-coupled receptor 87##BC117565|GPR87|53836|G protein-coupled receptor 87##AB031548|GPR87|53836|G protein-coupled receptor 87##BC132888|GPR87|53836|G protein-coupled receptor 87##BC132890|GPR87|53836|G protein-coupled receptor 87##AK027784|GPR87|53836|G protein-coupled receptor 87##NM_023915|GPR87|53836|G protein-coupled receptor 87##BC034989|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##D13626|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_014879|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##AK289617|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_001081455|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##BC041116|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##BC029363|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##AK313208|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##NM_176894|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##AF313449|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AF321815|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##NM_176876|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AK292096|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AK303714|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AK316575|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##BC017898|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##NM_022788|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	0.98955	0.777046	CTCF.p2:-11:0.777	denovo_WM_7:-41:0.713
chr19	51878817	51878977	reg1001799.p1	10.942	+	DQ895942 EU176419 BC015759 TSC_hg19_v1_chr19_-_51875909 NM_005601 S69115	-3018	-	BC029518 NM_152353	-6641	-	TSC_hg19_v1_chr19_-_51869643 NM_001985	-9245	-	BC074916 BC074917 BC126139 AF340019 BC069430 AF340020 NM_001161748 NM_030657	12300	-	TSC_hg19_v1_chr19_-_51893838 BC085012 BC143997 BC043532 NM_001193623	14928	-	TSC_hg19_v1_chr19_-_51920897 AK289900 AF310233 AY358337 AK290542 AK294185 AK303514 AK303717 BC101725 BC143497 BC143500 AF301007 AK292025 AK308982 AY032685 AF311905 NM_001171156 NM_001171157 NM_001171158 NM_001171159 NM_001171160 NM_001171161 NM_033130	42051	-	DQ895942|NKG7|4818|natural killer cell group 7 sequence##EU176419|NKG7|4818|natural killer cell group 7 sequence##BC015759|NKG7|4818|natural killer cell group 7 sequence##NM_005601|NKG7|4818|natural killer cell group 7 sequence##S69115|NKG7|4818|natural killer cell group 7 sequence##BC029518|CLDND2|125875|claudin domain containing 2##NM_152353|CLDND2|125875|claudin domain containing 2##NM_001985|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##BC074916|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC074917|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC126139|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##AF340019|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC069430|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##AF340020|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##NM_001161748|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##NM_030657|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC085012|LOC147646|147646|uncharacterized LOC147646##BC043532|LOC147646|147646|uncharacterized LOC147646##NM_001193623|LOC147646|147646|uncharacterized LOC147646##AK289900|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF310233|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AY358337|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK290542|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK294185|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK303514|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK303717|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC101725|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC143497|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC143500|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF301007|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK292025|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK308982|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AY032685|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF311905|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171156|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171157|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171158|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171159|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171160|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171161|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_033130|SIGLEC10|89790|sialic acid binding Ig-like lectin 10	1.975287	0.0	denovo_WM_7:25:0.968	denovo_WM_7:40:0.967
chr1	2044038	2044172	reg1002269.p1	10.941	+	NM_001033582	-7951	+	NM_001242874 AK294782	-38638	+	AK294649 NM_001033581	-39021	+	TSC_hg19_v1_chr1_-_2126212 BC041041 AF469129 BC066360 AK055593 BC103992 NM_182533	82074	-	AK127994 NM_001146310	95066	-	NM_003036 X15218 TSC_hg19_v1_chr1_+_2160159	116064	+	NM_001033582|PRKCZ|5590|protein kinase C, zeta##NM_001242874|PRKCZ|5590|protein kinase C, zeta##AK294782|PRKCZ|5590|protein kinase C, zeta##AK294649|PRKCZ|5590|protein kinase C, zeta##NM_001033581|PRKCZ|5590|protein kinase C, zeta##BC041041|C1orf86|199990|chromosome 1 open reading frame 86##AF469129|C1orf86|199990|chromosome 1 open reading frame 86##BC066360|C1orf86|199990|chromosome 1 open reading frame 86##AK055593|C1orf86|199990|chromosome 1 open reading frame 86##BC103992|C1orf86|199990|chromosome 1 open reading frame 86##NM_182533|C1orf86|199990|chromosome 1 open reading frame 86##AK127994|C1orf86|199990|chromosome 1 open reading frame 86##NM_001146310|C1orf86|199990|chromosome 1 open reading frame 86##NM_003036|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##X15218|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)	1.456531	0.0	denovo_WM_7:4:0.461	denovo_WM_7:32:0.799
chr3	31255418	31255563	reg1001496.p2	10.940	+	AL832766 NM_207359	-319338	-	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-607087	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-607468	+	TSC_hg19_v1_chr3_+_31574119 AK311488	318640	+	TSC_hg19_v1_chr3_+_31574468 AK074587	318959	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	318992	+	AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	0.999513	0.0	
chr10	103463222	103463355	reg1001623.p1	10.938	+	TSC_hg19_v1_chr10_-_103454921 AF281859	-8326	-	AK314735 TSC_hg19_v1_chr10_-_103454693 NM_022039	-8574	-	TSC_hg19_v1_chr10_+_103348081 BC031695 BC001082 NM_015448 AK290154 AB527777 EU832466 EU832547 AY532267	-115218	+	AB014615 U36223 U46211 U46212 U46213 U56978 BC069106 BC128235 BC128236 NM_006119 NM_033163 NM_033164 NM_033165	72419	-	NM_001206389	76837	-	CU691104 BC041067 TSC_hg19_v1_chr10_-_103543153 BC054868	79862	-	AF281859|FBXW4|6468|F-box and WD repeat domain containing 4##AK314735|FBXW4|6468|F-box and WD repeat domain containing 4##NM_022039|FBXW4|6468|F-box and WD repeat domain containing 4##BC031695|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##BC001082|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##NM_015448|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##AK290154|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##EU832466|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##EU832547|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##AY532267|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##AB014615|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U36223|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U46211|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U46212|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U46213|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U56978|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC069106|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC128235|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC128236|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_006119|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_033163|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_033164|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_033165|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_001206389|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC041067|NPM3|10360|nucleophosmin/nucleoplasmin 3##BC054868|NPM3|10360|nucleophosmin/nucleoplasmin 3	1.167394	0.0	
chr4	127774001	127774139	reg1001536.p1	10.936	+	NM_024582	-1536504	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	-2140256	-	AK026960 BC063856 NM_005841	-3453397	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	780069	+	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	877539	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	929363	+	NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like	0.999537	0.0	
chr15	59983553	59983703	reg1001699.p2	10.935	+	BC002461 TSC_hg19_v1_chr15_-_59981517 AK308237 NM_004330	-2049	-	TSC_hg19_v1_chr15_-_59981511 U15173	-2154	-	TSC_hg19_v1_chr15_-_59949715 X81713 U21242 U14193 BC000287 BC001919 AK312015 NM_004492	-33978	-	AK290944 NM_012182 TSC_hg19_v1_chr15_+_60296425	312800	+	EF565104 TSC_hg19_v1_chr15_+_60296453	312821	+	TSC_hg19_v1_chr15_+_60296509 AK314075	312921	+	BC002461|BNIP2|663|BCL2/adenovirus E1B 19kDa interacting protein 2##AK308237|BNIP2|663|BCL2/adenovirus E1B 19kDa interacting protein 2##NM_004330|BNIP2|663|BCL2/adenovirus E1B 19kDa interacting protein 2##U15173|BNIP2|663|BCL2/adenovirus E1B 19kDa interacting protein 2##X81713|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##U21242|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##U14193|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##BC000287|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##BC001919|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##AK312015|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##NM_004492|GTF2A2|2958|general transcription factor IIA, 2, 12kDa##AK290944|FOXB1|27023|forkhead box B1##NM_012182|FOXB1|27023|forkhead box B1##AK314075|FOXB1|27023|forkhead box B1	0.026844	0.277387	CTCF.p2:-14:0.277
chr7	100231216	100231396	reg1001700.p3	10.935	+	AF085928 NM_001206855	-103	-	TSC_hg19_v1_chr7_-_100230676 AK000421	-605	-	TSC_hg19_v1_chr7_+_100210156 NM_001040098 NM_001040099 NM_023948 BC011653 BC009482 BC028475 BC005042	-21234	+	BC150192 AF067864 BC142630 NM_003227	7848	-	TSC_hg19_v1_chr7_-_100240337 AK022002	9061	-	AB527576 CU676776 TSC_hg19_v1_chr7_-_100254028	22696	-	AF085928|TFR2|7036|transferrin receptor 2##NM_001206855|TFR2|7036|transferrin receptor 2##AK000421|TFR2|7036|transferrin receptor 2##NM_001040098|MOSPD3|64598|motile sperm domain containing 3##NM_001040099|MOSPD3|64598|motile sperm domain containing 3##NM_023948|MOSPD3|64598|motile sperm domain containing 3##BC011653|MOSPD3|64598|motile sperm domain containing 3##BC009482|MOSPD3|64598|motile sperm domain containing 3##BC028475|MOSPD3|64598|motile sperm domain containing 3##BC005042|MOSPD3|64598|motile sperm domain containing 3##BC150192|TFR2|7036|transferrin receptor 2##AF067864|TFR2|7036|transferrin receptor 2##BC142630|TFR2|7036|transferrin receptor 2##NM_003227|TFR2|7036|transferrin receptor 2##AK022002|TFR2|7036|transferrin receptor 2	1.749047	0.0	denovo_WM_7:21:0.287	denovo_WM_7:22:0.345	denovo_WM_7:23:0.235	denovo_WM_7:36:0.300	denovo_WM_7:37:0.302	denovo_WM_7:38:0.267
chr7	1552586	1552698	reg1001321.p1	10.935	+	TSC_hg19_v1_chr7_-_1544019 AK093809 AX748318 NM_001080453	-8609	-	TSC_hg19_v1_chr7_-_1499107 AK027124 NM_182924	-53535	-	CU691530 EU832111 EU832205 AK074068 BC037988 TSC_hg19_v1_chr7_-_1499102	-53609	-	TSC_hg19_v1_chr7_+_1570337 AF059194 NM_002360	17702	+	TSC_hg19_v1_chr7_+_1577118 AK092414	24480	+	TSC_hg19_v1_chr7_+_1580027 BC143040 BC143041 BC148194	27387	+	NM_001080453|INTS1|26173|integrator complex subunit 1##AK027124|MICALL2|79778|MICAL-like 2##NM_182924|MICALL2|79778|MICAL-like 2##EU832111|MICALL2|79778|MICAL-like 2##EU832205|MICALL2|79778|MICAL-like 2##AK074068|MICALL2|79778|MICAL-like 2##BC037988|MICALL2|79778|MICAL-like 2##AF059194|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##NM_002360|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##AK092414|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC143040|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC143041|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC148194|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	0.998725	0.0	
chr2	157394914	157395028	reg1001539.p2	10.934	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-102017	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-102105	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-102737	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	719322	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	787313	-	NM_001009959 AK296477	789185	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	0.999672	0.0	denovo_WM_7:26:0.842
chr3	61567162	61567316	reg1001445.p1	10.933	+	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-19263	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-19953	+	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	-20028	+	AB055764 TSC_hg19_v1_chr3_-_61728812	161572	-	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	737467	+	BC017772 NM_020685	738156	+	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14	1.146902	0.0	denovo_WM_7:54:0.209	denovo_WM_7:55:0.220
chr19	47652886	47653014	reg1001633.p1	10.929	+	TSC_hg19_v1_chr19_+_47634184 AB385085 DQ891751 DQ894932 CU676224 AF110956 BT007290	-18728	+	TSC_hg19_v1_chr19_+_47634171 BC003611	-18789	+	TSC_hg19_v1_chr19_+_47634145 AK315624 AF090385 AF046025 AK090645	-18811	+	U82987 BC136481 TSC_hg19_v1_chr19_-_47734457 AF332558 NM_014417	81395	-	AB590880 AK298837 AF354654 AF354655 AF354656 NM_001127240 NM_001127241 NM_001127242	82990	-	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	106811	+	DQ891751|SAE1|10055|SUMO1 activating enzyme subunit 1##DQ894932|SAE1|10055|SUMO1 activating enzyme subunit 1##AF110956|SAE1|10055|SUMO1 activating enzyme subunit 1##BT007290|SAE1|10055|SUMO1 activating enzyme subunit 1##BC003611|SAE1|10055|SUMO1 activating enzyme subunit 1##AK315624|SAE1|10055|SUMO1 activating enzyme subunit 1##AF090385|SAE1|10055|SUMO1 activating enzyme subunit 1##AF046025|SAE1|10055|SUMO1 activating enzyme subunit 1##AK090645|SAE1|10055|SUMO1 activating enzyme subunit 1##U82987|BBC3|27113|BCL2 binding component 3##BC136481|BBC3|27113|BCL2 binding component 3##AF332558|BBC3|27113|BCL2 binding component 3##NM_014417|BBC3|27113|BCL2 binding component 3##AK298837|BBC3|27113|BCL2 binding component 3##AF354654|BBC3|27113|BCL2 binding component 3##AF354655|BBC3|27113|BCL2 binding component 3##AF354656|BBC3|27113|BCL2 binding component 3##NM_001127240|BBC3|27113|BCL2 binding component 3##NM_001127241|BBC3|27113|BCL2 binding component 3##NM_001127242|BBC3|27113|BCL2 binding component 3##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9	0.0	0.308903	CTCF.p2:-10:0.309
chr5	76169980	76170108	reg1001259.p1	10.927	+	BC022320 NM_130772	-24219	+	TSC_hg19_v1_chr5_+_76114883 BC012453 AY336105 BT009856 CU676194 CU680330 DQ890966 DQ894139	-55100	+	NM_005242 BC018130 TSC_hg19_v1_chr5_+_76114854 U34038	-55192	+	NM_001882 AK223457 AK307729 BC018038 AK311052 X58022 CU676144 CR541666	78775	+	TSC_hg19_v1_chr5_+_76326231 NM_018046 BC032844	156182	+	TSC_hg19_v1_chr5_+_76326341 BC002828 U84971 AY500994 BC073864 CU689558	156490	+	BC022320|S100Z|170591|S100 calcium binding protein Z##NM_130772|S100Z|170591|S100 calcium binding protein Z##BC012453|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##AY336105|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BT009856|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ890966|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ894139|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##NM_005242|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC018130|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##U34038|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##NM_001882|CRHBP|1393|corticotropin releasing hormone binding protein##AK223457|CRHBP|1393|corticotropin releasing hormone binding protein##AK307729|CRHBP|1393|corticotropin releasing hormone binding protein##BC018038|CRHBP|1393|corticotropin releasing hormone binding protein##AK311052|CRHBP|1393|corticotropin releasing hormone binding protein##X58022|CRHBP|1393|corticotropin releasing hormone binding protein##CR541666|CRHBP|1393|corticotropin releasing hormone binding protein##NM_018046|AGGF1|55109|angiogenic factor with G patch and FHA domains 1##BC032844|AGGF1|55109|angiogenic factor with G patch and FHA domains 1##BC002828|AGGF1|55109|angiogenic factor with G patch and FHA domains 1##U84971|AGGF1|55109|angiogenic factor with G patch and FHA domains 1##AY500994|AGGF1|55109|angiogenic factor with G patch and FHA domains 1##BC073864|AGGF1|55109|angiogenic factor with G patch and FHA domains 1	1.012529	0.0	denovo_WM_7:-13:0.771
chr17	65643560	65643740	reg1000959.p1	10.925	+	BC007905 NM_012417 NM_181671	-269727	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-270062	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-270241	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	70400	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	178052	+	AK293224 TSC_hg19_v1_chr17_+_65822221	178567	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	2.969288	0.0	denovo_WM_7:-45:0.203	denovo_WM_7:-47:0.603	denovo_WM_7:-61:0.240	denovo_WM_7:-62:0.596	denovo_WM_7:100:0.890
chr20	48285351	48285469	reg1000874.p2	10.922	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-100721	-	BC110572 BC110573 NM_004975	-186231	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-390215	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	44820	-	AB004550 TSC_hg19_v1_chr20_-_48330359	44946	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	45056	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.0	0.0	
chr3	58073714	58073827	reg1001415.p1	10.920	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	-79623	+	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	-330568	+	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	-395031	-	NM_004944	126627	-	TSC_hg19_v1_chr3_+_58223264 NM_020676 AK225942 AK172797 AK313168	149513	+	TSC_hg19_v1_chr3_+_58223518 AF225418 AK122983 BC001698	149760	+	AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##NM_004944|DNASE1L3|1776|deoxyribonuclease I-like 3##NM_020676|ABHD6|57406|abhydrolase domain containing 6##AK225942|ABHD6|57406|abhydrolase domain containing 6##AK172797|ABHD6|57406|abhydrolase domain containing 6##AK313168|ABHD6|57406|abhydrolase domain containing 6##AF225418|ABHD6|57406|abhydrolase domain containing 6##AK122983|ABHD6|57406|abhydrolase domain containing 6##BC001698|ABHD6|57406|abhydrolase domain containing 6	0.998855	0.0	
chr7	130598349	130598510	reg1001133.p1	10.919	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-179502	-	AF294347 AF431815 BC038415 NM_052933	-227074	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-244834	-	TSC_hg19_v1_chr7_-_130792857 BC047367	194430	-	AK294384 NM_001145354	196425	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	414177	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	0.381106	0.0	denovo_WM_7:-3:0.316
chr16	27651235	27651367	reg1001591.p2	10.917	+	TSC_hg19_v1_chr16_+_27561464 NM_015202 AB011128 BC150276 BC131508	-89837	+	TSC_hg19_v1_chr16_-_27561248 NM_001520 U02619	-90032	-	TSC_hg19_v1_chr16_-_27561225 BC137229 BC151847 CR627430	-90070	-	BC016460 NM_144675	248176	-	TSC_hg19_v1_chr16_-_28074776 AY358206 NM_001109763	423501	-	AY026388 BC130304 BC144189 TSC_hg19_v1_chr16_-_28222816 AK123846	571484	-	NM_015202|KIAA0556|23247|KIAA0556##AB011128|KIAA0556|23247|KIAA0556##BC150276|KIAA0556|23247|KIAA0556##BC131508|KIAA0556|23247|KIAA0556##NM_001520|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa##U02619|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa##BC137229|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa##BC151847|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa##CR627430|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa##BC016460|GSG1L|146395|GSG1-like##NM_144675|GSG1L|146395|GSG1-like##AY358206|GSG1L|146395|GSG1-like##NM_001109763|GSG1L|146395|GSG1-like##AY026388|XPO6|23214|exportin 6##BC130304|XPO6|23214|exportin 6##BC144189|XPO6|23214|exportin 6##AK123846|XPO6|23214|exportin 6	0.0	0.402665	CTCF.p2:-25:0.403
chr2	216676487	216676650	reg1001746.p2	10.917	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-375786	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-376048	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-386596	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	201768	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	269976	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	270124	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.996052	0.0	denovo_WM_7:13:0.928
chr5	133860787	133860945	reg1001639.p1	10.914	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-18576	+	TSC_hg19_v1_chr5_-_133747599 NM_080656	-113267	-	TSC_hg19_v1_chr5_-_133747573 BC018086 BC008293	-113312	-	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	497	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	939	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	107631	-	NM_080656|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##BC018086|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##BC008293|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)	0.997712	0.0	denovo_WM_7:-3:0.470	denovo_WM_7:-4:0.527
chr7	101384367	101384494	reg1001758.p1	10.910	+	BC002778 NM_138403	-111855	-	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-378213	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-419392	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	74779	+	M74099 NM_181552	76451	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	543967	+	BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_020979|SH2B2|10603|SH2B adaptor protein 2	0.976464	0.0	denovo_WM_7:0:0.908
chr20	47883912	47884092	reg1001556.p1	10.909	+	BC041630 TSC_hg19_v1_chr20_-_47874187	-9834	-	TSC_hg19_v1_chr20_+_47835964 BC009304 BC011927 BC016060 HQ258546	-48028	+	TSC_hg19_v1_chr20_+_47835954 AK022979	-48044	+	BC110888 BC014041 AB037825 AK002139 TSC_hg19_v1_chr20_-_47894585	10575	-	TSC_hg19_v1_chr20_-_47894629 BC030789 NM_021035	10671	-	TSC_hg19_v1_chr20_+_47895176 BC042807 CR936805	11170	+	BC041630|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC009304|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC011927|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC016060|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258546|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK022979|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC110888|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC014041|ZNFX1|57169|zinc finger, NFX1-type containing 1##AB037825|ZNFX1|57169|zinc finger, NFX1-type containing 1##AK002139|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC030789|ZNFX1|57169|zinc finger, NFX1-type containing 1##NM_021035|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC042807|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##CR936805|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)	1.212154	0.0	denovo_WM_7:20:0.239	denovo_WM_7:21:0.239	denovo_WM_7:22:0.239	denovo_WM_7:23:0.239	denovo_WM_7:95:0.215
chr9	132800611	132800721	reg1001117.p1	10.909	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-202901	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-202944	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-202982	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	4688	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	4822	-	BC039728 NM_001136557 NM_001136558 NM_020960	15318	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	1.989423	0.0	denovo_WM_7:-19:0.450	denovo_WM_7:-20:0.450	denovo_WM_7:20:0.237	denovo_WM_7:21:0.237	denovo_WM_7:22:0.237	denovo_WM_7:23:0.237
chr17_ctg5_hap1	7436	7617	reg1001631.p2	10.907	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998732	0.0	denovo_WM_7:0:0.494	denovo_WM_7:-1:0.494
chr1	24047363	24047515	reg1001569.p2	10.905	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-29140	+	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	-29159	+	NM_002167 X69111	-161155	-	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	22465	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	22544	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	57330	-	BC018970|RPL11|6135|ribosomal protein L11##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AL049675|LOC100506963|100506963|uncharacterized LOC100506963	2.182927	0.0	denovo_WM_7:27:0.471	denovo_WM_7:42:0.474	denovo_WM_7:58:0.269
chr19	10212805	10212921	reg1000824.p3	10.903	+	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-15801	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-15866	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	-16077	+	AY358276 BC142632 AB054064 NM_031917 AF230330	537	-	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	4126	+	NM_002566 BC073827	9341	+	AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66##AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11	0.992224	0.0	
chr12	65015150	65015311	reg1001687.p1	10.901	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-10969	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-169337	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-211452	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	137867	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	137929	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	137954	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.0	0.0	
chr20	11361030	11361174	reg1001680.p1	10.901	+	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	-706533	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	-706898	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-945126	+	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	510347	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	537455	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	1628539	+	BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3	0.956227	0.133738	denovo_WM_7:1:0.649
chrX	13716252	13716409	reg1001465.p3	10.901	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	-9037	+	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	-9089	+	AK291271 AK315599 NM_152634 AK294465	-45064	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	36378	-	TSC_hg19_v1_chrX_+_13752866 NM_003611 AK290354 AK289677 BC012324 BC030787 BC062432 Y15164 Y16355	36504	+	AK225847 BC042830 TSC_hg19_v1_chrX_+_13752900	36570	+	AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2##NM_003611|OFD1|8481|oral-facial-digital syndrome 1##AK290354|OFD1|8481|oral-facial-digital syndrome 1##AK289677|OFD1|8481|oral-facial-digital syndrome 1##BC012324|OFD1|8481|oral-facial-digital syndrome 1##BC030787|OFD1|8481|oral-facial-digital syndrome 1##BC062432|OFD1|8481|oral-facial-digital syndrome 1##Y15164|OFD1|8481|oral-facial-digital syndrome 1##Y16355|OFD1|8481|oral-facial-digital syndrome 1##AK225847|OFD1|8481|oral-facial-digital syndrome 1##BC042830|OFD1|8481|oral-facial-digital syndrome 1	1.981157	0.0	denovo_WM_7:-5:0.314	denovo_WM_7:-6:0.265	denovo_WM_7:-21:0.285
chr5	35003610	35003731	reg1001562.p1	10.897	+	TSC_hg19_v1_chr5_+_34929697 AY177688 AY258422 BC065745 NM_001012339 NM_194283	-73978	+	AK303311 TSC_hg19_v1_chr5_+_34915820 AK001962 BC006014 BC001546 NM_018321 AK289610 BX648902 DQ892108 DQ895302 AF347667 AY364243 AY364244	-87858	+	TSC_hg19_v1_chr5_-_34915716 AK002112 NM_002853	-87924	-	NM_031900	44569	-	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	114553	-	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	226907	-	AY177688|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##AY258422|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##BC065745|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_001012339|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_194283|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##AK303311|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AK001962|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##BC006014|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##BC001546|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##NM_018321|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AK289610|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##BX648902|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##DQ892108|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##DQ895302|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AF347667|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AY364243|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AY364244|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AK002112|RAD1|5810|RAD1 homolog (S. pombe)##NM_002853|RAD1|5810|RAD1 homolog (S. pombe)##NM_031900|AGXT2|64902|alanine--glyoxylate aminotransferase 2##NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor	0.978636	0.995166	CTCF.p2:-16:0.995	denovo_WM_7:20:0.495	denovo_WM_7:21:0.462
chr8	28725891	28726045	reg1001574.p1	10.896	+	TSC_hg19_v1_chr8_+_28559149 AF001690 AB007042 AF083551 NM_001440	-166818	+	TSC_hg19_v1_chr8_+_28559032 AB011091	-166893	+	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	-374203	+	TSC_hg19_v1_chr8_-_28747454 BC016687 AK225072 AK304525 AK298468 NM_001172562 BC025267 AK300593 AK295977 AK001733 AK225530	21492	-	NM_001145159 NM_018250	21729	-	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	21949	+	AF001690|EXTL3|2137|exostoses (multiple)-like 3##AB007042|EXTL3|2137|exostoses (multiple)-like 3##AF083551|EXTL3|2137|exostoses (multiple)-like 3##NM_001440|EXTL3|2137|exostoses (multiple)-like 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##BC016687|INTS9|55756|integrator complex subunit 9##AK225072|INTS9|55756|integrator complex subunit 9##AK304525|INTS9|55756|integrator complex subunit 9##AK298468|INTS9|55756|integrator complex subunit 9##NM_001172562|INTS9|55756|integrator complex subunit 9##BC025267|INTS9|55756|integrator complex subunit 9##AK300593|INTS9|55756|integrator complex subunit 9##AK295977|INTS9|55756|integrator complex subunit 9##AK001733|INTS9|55756|integrator complex subunit 9##AK225530|INTS9|55756|integrator complex subunit 9##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1	0.105192	0.0	
chr20	1935231	1935372	reg1001653.p2	10.891	+	TSC_hg19_v1_chr20_+_1876034 AK312521 BC033092 Y10375 AB385585 D86043 DQ891651	-59252	+	BC038510 NM_001040023 TSC_hg19_v1_chr20_+_1875923	-59427	+	TSC_hg19_v1_chr20_+_1875554 BC026692	-59705	+	AK289618 NM_001190892	38150	-	NM_001190900	39092	-	AK316076 BC026334 AK295512 TSC_hg19_v1_chr20_-_1974732 AK308747 NM_001190898 NM_001190899 NM_024411	39514	-	AK312521|SIRPA|140885|signal-regulatory protein alpha##BC033092|SIRPA|140885|signal-regulatory protein alpha##Y10375|SIRPA|140885|signal-regulatory protein alpha##D86043|SIRPA|140885|signal-regulatory protein alpha##DQ891651|SIRPA|140885|signal-regulatory protein alpha##BC038510|SIRPA|140885|signal-regulatory protein alpha##NM_001040023|SIRPA|140885|signal-regulatory protein alpha##BC026692|SIRPA|140885|signal-regulatory protein alpha##AK289618|PDYN|5173|prodynorphin##NM_001190892|PDYN|5173|prodynorphin##NM_001190900|PDYN|5173|prodynorphin##AK316076|PDYN|5173|prodynorphin##BC026334|PDYN|5173|prodynorphin##NM_001190898|PDYN|5173|prodynorphin##NM_001190899|PDYN|5173|prodynorphin##NM_024411|PDYN|5173|prodynorphin	0.998449	0.0	
chr5	116099974	116100148	reg1001379.p4	10.891	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-189547	-	TSC_hg19_v1_chr5_+_115898220 D28352	-201837	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-679340	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2224177	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2306750	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2307104	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr12	8130022	8130131	reg1001360.p1	10.885	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-41310	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-86308	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-104610	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	55414	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	88877	-	TSC_hg19_v1_chr12_-_8219032 U62027	88940	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.995848	0.0	denovo_WM_7:-15:0.825
chr19	47328796	47328930	reg1001286.p1	10.880	+	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-37141	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-37590	-	AK293433 AK301661 NM_001145144	-38321	-	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	25268	-	AB051509 AF159851 BC131565 BC150257 NM_004491	93069	+	TSC_hg19_v1_chr19_+_47523068 BC039016	194213	+	AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK293433|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK301661|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145144|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1	1.597758	0.0	denovo_WM_7:46:0.660	denovo_WM_7:-79:0.645
chr5	122856502	122856650	reg1001648.p1	10.877	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-8694	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-97432	-	NM_001136239 AK297992 AF272898 AF272899	-431732	+	BC131507 AB033107 BC151226 NM_020747	1224212	-	NM_001146319 AK316288 AK300154	2839238	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	2902267	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.79419	0.0	denovo_WM_7:-1:0.780
chr21	42734532	42734712	reg1001432.p3	10.876	+	TSC_hg19_v1_chr21_+_42733956 M30818 NM_002463 AK308060 AK126107	-684	+	AK125528 NM_058186 NM_206964 TSC_hg19_v1_chr21_+_42688738 BC057829 AF375989 AJ409094 AY040086 AY358459 HQ257913 AF494379	-45889	+	AK302095 BC036314 TSC_hg19_v1_chr21_+_42676236	-58416	+	TSC_hg19_v1_chr21_+_42742025 AK298780	7397	+	AK096355 NM_001144925	57858	+	NM_002462 TSC_hg19_v1_chr21_+_42798165 AK225885 AK315465 NM_001178046 M33882 BC052255	63472	+	M30818|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##NM_002463|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK308060|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK126107|LOC100131190|100131190|uncharacterized LOC100131190##AK125528|FAM3B|54097|family with sequence similarity 3, member B##NM_058186|FAM3B|54097|family with sequence similarity 3, member B##NM_206964|FAM3B|54097|family with sequence similarity 3, member B##BC057829|FAM3B|54097|family with sequence similarity 3, member B##AF375989|FAM3B|54097|family with sequence similarity 3, member B##AJ409094|FAM3B|54097|family with sequence similarity 3, member B##AY040086|FAM3B|54097|family with sequence similarity 3, member B##AY358459|FAM3B|54097|family with sequence similarity 3, member B##HQ257913|FAM3B|54097|family with sequence similarity 3, member B##AF494379|FAM3B|54097|family with sequence similarity 3, member B##BC036314|FAM3B|54097|family with sequence similarity 3, member B##AK298780|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK096355|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_001144925|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_002462|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##AK225885|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##AK315465|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_001178046|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##M33882|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##BC052255|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)	1.995703	0.012664	denovo_WM_7:58:0.586	denovo_WM_7:73:0.372	denovo_WM_7:74:0.383
chr5	88367433	88367613	reg1001616.p1	10.874	+	AL833268 AL833274 NM_001131005 NM_001193347	-167629	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-182259	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-182403	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	1338016	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1402659	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1403055	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.789211	0.0	denovo_WM_7:43:0.666
chr10	98468321	98468484	reg1001637.p1	10.871	+	TSC_hg19_v1_chr10_-_98346798 AF269150 BC136788 BC136789 BC144412 NM_020123	-121579	-	TSC_hg19_v1_chr10_-_98346770 AK314348	-121624	-	TSC_hg19_v1_chr10_-_98346739 AF160213	-121730	-	BX648550 TSC_hg19_v1_chr10_-_98480272 AK125635 NM_152309	11839	-	TSC_hg19_v1_chr10_+_98592020 NM_001170765 NM_001170766 AL832106 AK308356 BC053359	123651	+	TSC_hg19_v1_chr10_-_98592186 AB593180	123798	-	AF269150|TM9SF3|56889|transmembrane 9 superfamily member 3##BC136788|TM9SF3|56889|transmembrane 9 superfamily member 3##BC136789|TM9SF3|56889|transmembrane 9 superfamily member 3##BC144412|TM9SF3|56889|transmembrane 9 superfamily member 3##NM_020123|TM9SF3|56889|transmembrane 9 superfamily member 3##AK314348|TM9SF3|56889|transmembrane 9 superfamily member 3##AF160213|TM9SF3|56889|transmembrane 9 superfamily member 3##BX648550|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##AK125635|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##NM_152309|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##NM_001170765|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170766|LCOR|84458|ligand dependent nuclear receptor corepressor##AL832106|LCOR|84458|ligand dependent nuclear receptor corepressor##BC053359|LCOR|84458|ligand dependent nuclear receptor corepressor	1.78711	0.0	denovo_WM_7:-45:0.363	denovo_WM_7:-61:0.230	denovo_WM_7:-62:0.265
chr1	213291333	213291471	reg1001603.p1	10.865	+	TSC_hg19_v1_chr1_+_213224716 AB070706 EF491805	-66642	+	TSC_hg19_v1_chr1_+_213224692 BC104769 BC143449 BC143473 BC143474	-66725	+	TSC_hg19_v1_chr1_+_213224631 AK122989 NM_001136138 NM_012424 AK299298 AF477978 AK122921 AK295053	-66815	+	AK298182 TSC_hg19_v1_chr1_+_214161296 U44060	869887	+	BC024201 NM_002763	870457	+	TSC_hg19_v1_chr1_+_214454550 BC068511 BC049367 BC094747 BC057793 NM_020197 AF226053 BC098133 BC098276 BC098305 BC098335 BC028104 AK313868 AB590916 BC039890	1163035	+	AB070706|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC104769|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143449|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143473|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143474|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK122989|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##NM_001136138|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##NM_012424|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK299298|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AF477978|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK122921|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK295053|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK298182|PROX1|5629|prospero homeobox 1##U44060|PROX1|5629|prospero homeobox 1##BC024201|PROX1|5629|prospero homeobox 1##NM_002763|PROX1|5629|prospero homeobox 1##BC068511|SMYD2|56950|SET and MYND domain containing 2##BC049367|SMYD2|56950|SET and MYND domain containing 2##BC094747|SMYD2|56950|SET and MYND domain containing 2##BC057793|SMYD2|56950|SET and MYND domain containing 2##NM_020197|SMYD2|56950|SET and MYND domain containing 2##AF226053|SMYD2|56950|SET and MYND domain containing 2##BC098133|SMYD2|56950|SET and MYND domain containing 2##BC098276|SMYD2|56950|SET and MYND domain containing 2##BC098305|SMYD2|56950|SET and MYND domain containing 2##BC098335|SMYD2|56950|SET and MYND domain containing 2##BC028104|SMYD2|56950|SET and MYND domain containing 2##AK313868|SMYD2|56950|SET and MYND domain containing 2##BC039890|SMYD2|56950|SET and MYND domain containing 2	0.999216	0.0	denovo_WM_7:-27:0.239	denovo_WM_7:-28:0.239	denovo_WM_7:-29:0.239	denovo_WM_7:-30:0.239
chr5	17091113	17091225	reg1001564.p1	10.861	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-154784	-	BC050682 BC041694 TSC_hg19_v1_chr5_-_16936357 BC108736 BC032669	-154841	-	AK316138 TSC_hg19_v1_chr5_-_16742338	-348832	-	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	126443	+	TSC_hg19_v1_chr5_+_17217804 AF039656	126671	+	AK295087 BC031051 NM_001167667 NM_004934	2897153	-	AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##BC050682|MYO10|4651|myosin X##BC041694|MYO10|4651|myosin X##BC108736|MYO10|4651|myosin X##BC032669|MYO10|4651|myosin X##AK316138|MYO10|4651|myosin X##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2	0.995747	0.0	
chr6	52161632	52161767	reg1001823.p1	10.861	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-12120	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-12179	-	AB528319 DQ893654 DQ895840 TSC_hg19_v1_chr6_-_52149506 AK312928 AK300754 X62153 AY032603	-12208	-	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	65258	+	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	123379	+	AK297632 NM_001172420	124105	+	D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##DQ893654|MCM3|4172|minichromosome maintenance complex component 3##DQ895840|MCM3|4172|minichromosome maintenance complex component 3##AK312928|MCM3|4172|minichromosome maintenance complex component 3##AK300754|MCM3|4172|minichromosome maintenance complex component 3##X62153|MCM3|4172|minichromosome maintenance complex component 3##AY032603|MCM3|4172|minichromosome maintenance complex component 3##NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1	0.995772	0.0	denovo_WM_7:25:0.983
chr19	11678723	11678849	reg1001230.p2	10.858	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-8753	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-29127	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-38829	-	X14618 TSC_hg19_v1_chr19_-_11688461	9665	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	9704	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	9744	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	1.993796	0.0	denovo_WM_7:-70:0.492	denovo_WM_7:-71:0.328	denovo_WM_7:-86:0.331	denovo_WM_7:-87:0.495
chr12	110806281	110806461	reg1001089.p2	10.857	+	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-87003	+	TSC_hg19_v1_chr12_+_110719041 NM_001681 NM_170665	-87336	+	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	-244150	+	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	35068	-	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	35140	-	TSC_hg19_v1_chr12_-_110888079 AF006086	81714	-	M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001681|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_170665|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	1.426248	0.0	denovo_WM_7:10:0.226
chr19	3857642	3857822	reg1001725.p2	10.857	+	AK055395 NM_002378	-55923	-	TSC_hg19_v1_chr19_-_3786423 BC000114 BC003109 NM_139354 NM_139355	-71321	-	L18974 TSC_hg19_v1_chr19_-_3786289 AL137754 AK315646 AB593100	-71435	-	AL365406 TSC_hg19_v1_chr19_-_3869037 AK295037 NM_001145640 NM_015174 BC034005	11307	-	NM_033064 TSC_hg19_v1_chr19_+_3880650	22903	+	TSC_hg19_v1_chr19_+_3880670 AB058775	22933	+	AK055395|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_002378|MATK|4145|megakaryocyte-associated tyrosine kinase##BC000114|MATK|4145|megakaryocyte-associated tyrosine kinase##BC003109|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_139354|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_139355|MATK|4145|megakaryocyte-associated tyrosine kinase##L18974|MATK|4145|megakaryocyte-associated tyrosine kinase##AL137754|MATK|4145|megakaryocyte-associated tyrosine kinase##AK315646|MATK|4145|megakaryocyte-associated tyrosine kinase##AB593100|MATK|4145|megakaryocyte-associated tyrosine kinase##AL365406|ZFR2|23217|zinc finger RNA binding protein 2##AK295037|ZFR2|23217|zinc finger RNA binding protein 2##NM_001145640|ZFR2|23217|zinc finger RNA binding protein 2##NM_015174|ZFR2|23217|zinc finger RNA binding protein 2##BC034005|ZFR2|23217|zinc finger RNA binding protein 2##NM_033064|ATCAY|85300|ataxia, cerebellar, Cayman type##AB058775|ATCAY|85300|ataxia, cerebellar, Cayman type	0.999414	0.0	
chr16	88727424	88727552	reg1001269.p1	10.855	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	-10039	-	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	-22485	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-90619	+	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	2029	-	TSC_hg19_v1_chr16_+_88729753 BX640980	2263	+	TSC_hg19_v1_chr16_+_88729781 BC015583 BC050404	2307	+	AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##BX640980|MGC23284|197187|uncharacterized LOC197187##BC015583|MGC23284|197187|uncharacterized LOC197187##BC050404|MGC23284|197187|uncharacterized LOC197187	1.778813	0.0	denovo_WM_7:5:0.687
chr17	7456237	7456377	reg1001257.p1	10.855	+	BC019047 NM_003809 NM_172089 BC071837 AF055872 AY358870 AY081051 BC104420 AF030099	-3894	+	TSC_hg19_v1_chr17_+_7388113 CU688278	-68191	+	TSC_hg19_v1_chr17_+_7387773 BC137231 BC067295	-68452	+	TSC_hg19_v1_chr17_+_7461620 NM_001198622 NM_001198623 NM_001198624 NM_003808 NM_172087 NM_172088	5309	+	AK225556 AK314518 AK301221 AF046888 AF114011 AY081050 AF114013 AF114012 AF184972 AY358880 BC008042 TSC_hg19_v1_chr17_+_7462318 DQ149579 EF211088 EU831984 EU832077 AF136294 BT019561 BT019562 CR542040 CR542073	5903	+	TSC_hg19_v1_chr17_+_7465295 NM_015670	8989	+	BC019047|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##NM_003809|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##NM_172089|TNFSF12-TNFSF13|407977|TNFSF12-TNFSF13 readthrough##BC071837|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AF055872|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AY358870|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AY081051|TNFSF12-TNFSF13|407977|TNFSF12-TNFSF13 readthrough##BC104420|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AF030099|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##BC137231|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##BC067295|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##NM_001198622|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_001198623|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_001198624|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_003808|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_172087|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_172088|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK225556|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK314518|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK301221|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF046888|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114011|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AY081050|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114013|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114012|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF184972|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AY358880|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BC008042|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##DQ149579|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EF211088|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EU831984|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EU832077|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF136294|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BT019561|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BT019562|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##CR542040|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##CR542073|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_015670|SENP3|26168|SUMO1/sentrin/SMT3 specific peptidase 3	1.994026	0.0	
chr10	112201531	112201692	reg1001703.p1	10.854	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-136911	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-137018	-	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-215790	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	56140	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	125881	+	AF067163 TSC_hg19_v1_chr10_+_112344155	142504	+	BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3	1.022203	0.0	denovo_WM_7:-88:0.480	denovo_WM_7:-91:0.314
chr7	5649380	5649517	reg1001588.p1	10.851	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	-16938	+	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	-17010	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-79239	-	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	171774	-	BC004947 TSC_hg19_v1_chr7_-_5821284 AK297231 BC063825 AK092767 AX747717 AK297416 BX537406 NM_207111 NM_207116 AK292396	171861	-	TSC_hg19_v1_chr7_+_5862791 AK291169 AK096288	213337	+	BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216##BC004947|RNF216|54476|ring finger protein 216##AK297231|RNF216|54476|ring finger protein 216##BC063825|RNF216|54476|ring finger protein 216##AK092767|RNF216|54476|ring finger protein 216##AK297416|RNF216|54476|ring finger protein 216##BX537406|RNF216|54476|ring finger protein 216##NM_207111|RNF216|54476|ring finger protein 216##NM_207116|RNF216|54476|ring finger protein 216##AK292396|RNF216|54476|ring finger protein 216##AK291169|ZNF815|401303|zinc finger protein 815##AK096288|ZNF815|401303|zinc finger protein 815	1.970029	0.0	denovo_WM_7:2:0.695
chr1	35497617	35497735	reg1001218.p1	10.848	+	TSC_hg19_v1_chr1_-_35497577 BC068534 NM_007167	-77	-	TSC_hg19_v1_chr1_-_35497547 BC107880 BC033903	-127	-	AK092067 AK310938 AL389985 AL832911 AK301461 AK310703 TSC_hg19_v1_chr1_-_35497543 AK299293	-181	-	TSC_hg19_v1_chr1_+_35544983 AK299779 NM_024772	47289	+	TSC_hg19_v1_chr1_+_35544986 AK096206 AK308655 CR936813 BC037313 BX537537 BX648307	47338	+	BC004534 TSC_hg19_v1_chr1_-_35658589	160869	-	BC068534|ZMYM6|9204|zinc finger, MYM-type 6##NM_007167|ZMYM6|9204|zinc finger, MYM-type 6##BC107880|ZMYM6|9204|zinc finger, MYM-type 6##BC033903|ZMYM6|9204|zinc finger, MYM-type 6##AK092067|ZMYM6|9204|zinc finger, MYM-type 6##AK310938|ZMYM6|9204|zinc finger, MYM-type 6##AL389985|ZMYM6|9204|zinc finger, MYM-type 6##AL832911|ZMYM6|9204|zinc finger, MYM-type 6##AK301461|ZMYM6|9204|zinc finger, MYM-type 6##AK310703|ZMYM6|9204|zinc finger, MYM-type 6##AK299293|ZMYM6|9204|zinc finger, MYM-type 6##AK299779|ZMYM1|79830|zinc finger, MYM-type 1##NM_024772|ZMYM1|79830|zinc finger, MYM-type 1##AK096206|ZMYM1|79830|zinc finger, MYM-type 1##AK308655|ZMYM1|79830|zinc finger, MYM-type 1##CR936813|ZMYM1|79830|zinc finger, MYM-type 1##BC037313|ZMYM1|79830|zinc finger, MYM-type 1##BX537537|ZMYM1|79830|zinc finger, MYM-type 1##BX648307|ZMYM1|79830|zinc finger, MYM-type 1##BC004534|SFPQ|6421|splicing factor proline/glutamine-rich	2.622247	0.0	denovo_WM_7:47:0.545	denovo_WM_7:62:0.565	denovo_WM_7:77:0.633
chr22	17700442	17700565	reg1001270.p2	10.847	+	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-140	-	AF190746 NM_017424	-9725	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-19989	-	TSC_hg19_v1_chr22_-_17747522 AF277398	47068	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	342716	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	410942	-	AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	1.386084	0.0	denovo_WM_7:56:0.211
chr17	47293443	47293584	reg1001492.p2	10.846	+	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-5436	+	NM_001198754	-5578	-	AB037886 NM_001135186 NM_016428	-5925	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	14630	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	146067	-	BC095460 TSC_hg19_v1_chr17_-_47492215	198702	-	BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##AB037886|ABI3|51225|ABI family, member 3##NM_001135186|ABI3|51225|ABI family, member 3##NM_016428|ABI3|51225|ABI family, member 3##BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin	0.993639	0.0	denovo_WM_7:-28:0.302	denovo_WM_7:-29:0.302	denovo_WM_7:-30:0.302
chr2	9691260	9691418	reg1001583.p2	10.845	+	TSC_hg19_v1_chr2_+_9614657 BC019061 BC067865 BC111025 NM_001039613 BC059410 AK291984 BC039709 AK092982 AK297648	-76670	+	AK298918 TSC_hg19_v1_chr2_+_9563789 BC011654 AK223487 BC020211 NM_016207 AF171877 EU176402 BC014106 BC043432	-127385	+	TSC_hg19_v1_chr2_+_9563779 BC030988	-127559	+	AY422721 TSC_hg19_v1_chr2_-_9695771 BC136783	4436	-	TSC_hg19_v1_chr2_-_9695874 U69611 U69612	4511	-	TSC_hg19_v1_chr2_-_9695883 AK289829	4544	-	BC019061|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC067865|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC111025|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##NM_001039613|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC059410|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK291984|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC039709|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK092982|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK297648|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK298918|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC011654|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##AK223487|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC020211|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##NM_016207|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##AF171877|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##EU176402|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC014106|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC043432|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC030988|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##AY422721|ADAM17|6868|ADAM metallopeptidase domain 17##BC136783|ADAM17|6868|ADAM metallopeptidase domain 17##U69611|ADAM17|6868|ADAM metallopeptidase domain 17##U69612|ADAM17|6868|ADAM metallopeptidase domain 17##AK289829|ADAM17|6868|ADAM metallopeptidase domain 17	0.991518	0.0	denovo_WM_7:34:0.920
chr8	81894017	81894168	reg1000792.p1	10.841	+	AK131274 NM_001033723	-107077	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-495608	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-810322	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	130222	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	298681	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	465577	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.9989	0.0	
chr20	5019865	5020022	reg1001676.p1	10.840	+	BC013112 AF164142 NM_203327	-29018	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-37783	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-215749	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	73672	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	80612	-	AK300558 AK311014 NM_002592	87283	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	1.786359	0.0	denovo_WM_7:-26:0.585	denovo_WM_7:-44:0.290
chr2	61199556	61199708	reg1001332.p3	10.837	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	-90845	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	-90895	+	TSC_hg19_v1_chr2_+_61108702 AK303926	-90927	+	TSC_hg19_v1_chr2_-_61244326 AK291729 BC065197	44685	-	AK311426 NM_002618 TSC_hg19_v1_chr2_+_61244828	45137	+	TSC_hg19_v1_chr2_+_61244858 AK315244 AB022192 AF048755 BC067090 BC020547 BC040953 BC048804 BC035584 AB528913 CU688242 U71374	45242	+	BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK291729|PUS10|150962|pseudouridylate synthase 10##NM_002618|PEX13|5194|peroxisomal biogenesis factor 13##AK315244|PEX13|5194|peroxisomal biogenesis factor 13##AB022192|PEX13|5194|peroxisomal biogenesis factor 13##AF048755|PEX13|5194|peroxisomal biogenesis factor 13##BC067090|PEX13|5194|peroxisomal biogenesis factor 13##U71374|PEX13|5194|peroxisomal biogenesis factor 13	0.989064	0.0	denovo_WM_7:-16:0.766
chr3	46969972	46970119	reg1001596.p2	10.836	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-46303	+	BC112221 BC112247 NM_000316 U17418 X68596	-50796	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-65120	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	48200	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	51202	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	59425	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.897437	0.0	denovo_WM_7:-12:0.819
chr10	12111613	12111761	reg1000982.p3	10.835	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	-680	+	TSC_hg19_v1_chr10_+_12110952 NM_018706	-751	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-26605	-	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	59966	+	TSC_hg19_v1_chr10_-_12237861 AF218818 AK291131 AF155832 AF161464	126179	-	TSC_hg19_v1_chr10_+_12237965 NM_006023 D14878 AK225634	126274	+	BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF218818|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AK291131|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF155832|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF161464|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##NM_006023|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##D14878|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK225634|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)	1.486768	0.0	denovo_WM_7:4:0.213	denovo_WM_7:5:0.201	denovo_WM_7:20:0.286
chr1	8714008	8714146	reg1001323.p1	10.835	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-230060	-	NM_001080397	-329688	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-627679	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	163515	-	GU170215 NM_001201483	217557	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	224630	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.987761	0.0	denovo_WM_7:16:0.558	denovo_WM_7:17:0.325
chr19	6527882	6528024	reg1001617.p1	10.833	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-25636	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-46170	-	NM_139161 NM_174881 AK292956 AF503290 AY358684 BC018409 AK000653	-63669	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	3073	+	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	63079	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	63153	-	EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##NM_139161|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_174881|CRB3|92359|crumbs homolog 3 (Drosophila)##AK292956|CRB3|92359|crumbs homolog 3 (Drosophila)##AF503290|CRB3|92359|crumbs homolog 3 (Drosophila)##AY358684|CRB3|92359|crumbs homolog 3 (Drosophila)##BC018409|CRB3|92359|crumbs homolog 3 (Drosophila)##AK000653|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule	0.695855	0.0	denovo_WM_7:3:0.260	denovo_WM_7:4:0.249
chr6	73399431	73399596	reg1001535.p3	10.827	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	-67452	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	-67624	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	-67943	+	BC004267 NM_001126063	535661	-	TSC_hg19_v1_chr6_-_73972815 BC022080 NM_030568 AK054891	573353	-	TSC_hg19_v1_chr6_+_73972992 BC031876 AK094485	573460	+	AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC004267|KHDC1L|100129128|KH homology domain containing 1-like##NM_001126063|KHDC1L|100129128|KH homology domain containing 1-like##BC022080|KHDC1|80759|KH homology domain containing 1##NM_030568|KHDC1|80759|KH homology domain containing 1	1.684695	0.0	denovo_WM_7:0:0.405	denovo_WM_7:1:0.458	denovo_WM_7:39:0.604
chr2	11004076	11004214	reg1001279.p1	10.826	+	TSC_hg19_v1_chr2_-_10952912 AK294347 D49489 BC001312 NM_005742	-51225	-	TSC_hg19_v1_chr2_-_10952851 DQ891186 DQ894369 AK289428	-51317	-	TSC_hg19_v1_chr2_-_10942759 AK225496 U79278	-61441	-	BC026110 NM_002236 TSC_hg19_v1_chr2_+_11052109	47940	+	AK057872 NM_182500 BC120930 AK292828	269071	+	BC027625 NM_152391 TSC_hg19_v1_chr2_+_11295562	291406	+	AK294347|PDIA6|10130|protein disulfide isomerase family A, member 6##D49489|PDIA6|10130|protein disulfide isomerase family A, member 6##BC001312|PDIA6|10130|protein disulfide isomerase family A, member 6##NM_005742|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ891186|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ894369|PDIA6|10130|protein disulfide isomerase family A, member 6##AK289428|PDIA6|10130|protein disulfide isomerase family A, member 6##AK225496|PDIA6|10130|protein disulfide isomerase family A, member 6##U79278|PDIA6|10130|protein disulfide isomerase family A, member 6##BC026110|KCNF1|3754|potassium voltage-gated channel, subfamily F, member 1##NM_002236|KCNF1|3754|potassium voltage-gated channel, subfamily F, member 1##AK057872|C2orf50|130813|chromosome 2 open reading frame 50##NM_182500|C2orf50|130813|chromosome 2 open reading frame 50##BC120930|C2orf50|130813|chromosome 2 open reading frame 50##AK292828|C2orf50|130813|chromosome 2 open reading frame 50##BC027625|PQLC3|130814|PQ loop repeat containing 3##NM_152391|PQLC3|130814|PQ loop repeat containing 3	0.995489	0.0	denovo_WM_7:-33:0.422	denovo_WM_7:-35:0.456
chr13	60254679	60254796	reg1001384.p2	10.824	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-2046841	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-2048790	+	NM_001040429	-2048949	+	BC041395 TSC_hg19_v1_chr13_-_60325215	70407	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	332583	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	483244	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	0.998996	0.711033	CTCF.p2:17:0.711	denovo_WM_7:-29:0.427	denovo_WM_7:-30:0.479
chr12	125378478	125378658	reg1001297.p1	10.821	+	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	-30095	-	TSC_hg19_v1_chr12_-_125348408 AB209436 BC022087 BC080647 AK304730	-30191	-	DQ892837 DQ896083 BC093732 BC112037 BC143319 Z22555 TSC_hg19_v1_chr12_-_125348344	-30263	-	AY732488 AY819759 BC008955 BC080583 AB209782 BC000449 AK056939 AK098827 AK129749 AK291539 BC039193 BC093445 AB009010 TSC_hg19_v1_chr12_-_125399197 AK026846	20605	-	NM_021009	21018	-	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	95076	-	NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1##AB209436|SCARB1|949|scavenger receptor class B, member 1##BC022087|SCARB1|949|scavenger receptor class B, member 1##BC080647|SCARB1|949|scavenger receptor class B, member 1##AK304730|SCARB1|949|scavenger receptor class B, member 1##DQ892837|SCARB1|949|scavenger receptor class B, member 1##DQ896083|SCARB1|949|scavenger receptor class B, member 1##BC093732|SCARB1|949|scavenger receptor class B, member 1##BC112037|SCARB1|949|scavenger receptor class B, member 1##BC143319|SCARB1|949|scavenger receptor class B, member 1##Z22555|SCARB1|949|scavenger receptor class B, member 1##AY732488|UBC|7316|ubiquitin C##AY819759|UBC|7316|ubiquitin C##BC008955|UBC|7316|ubiquitin C##BC080583|UBC|7316|ubiquitin C##AB209782|UBC|7316|ubiquitin C##BC000449|UBC|7316|ubiquitin C##AK056939|UBC|7316|ubiquitin C##AK098827|UBC|7316|ubiquitin C##AK129749|UBC|7316|ubiquitin C##AK291539|UBC|7316|ubiquitin C##BC039193|UBC|7316|ubiquitin C##BC093445|UBC|7316|ubiquitin C##AB009010|UBC|7316|ubiquitin C##AK026846|UBC|7316|ubiquitin C##NM_021009|UBC|7316|ubiquitin C##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37	2.973169	0.0	denovo_WM_7:-76:0.914	denovo_WM_7:96:0.984	denovo_WM_7:-97:0.439	denovo_WM_7:-98:0.439
chr7	3132101	3132255	reg1001362.p1	10.818	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	-48716	-	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-248370	-	AK289723 AB075830 BC146753 NM_133463	-413020	+	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	208821	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1589660	+	TSC_hg19_v1_chr7_+_4722091 AX721089 AK302243 AK122663	1590073	+	AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1##AK302243|FOXK1|221937|forkhead box K1##AK122663|FOXK1|221937|forkhead box K1	0.984814	0.0	denovo_WM_7:-12:0.415	denovo_WM_7:-13:0.370
chr8	145264733	145264890	reg1001438.p2	10.813	+	AK295740 NM_001099280 NM_001099281 NM_032450 AK093563 AX748203 BC057824 BC067855 BC092486	-61883	+	BC003035 BC009915 NM_016458 AK098226 BC015471	-72116	+	TSC_hg19_v1_chr8_+_145159398 BC031273 BC018714 BC014082 AL136937	-105398	+	AX721087 NM_001008271 NM_001080514	56678	+	BC003035 BC009915 NM_016458 AK098226 BC015471	173092	+	AX721087 NM_001008271 NM_001080514	225764	+	AK295740|HEATR7A|727957|HEAT repeat containing 7A##NM_001099280|HEATR7A|727957|HEAT repeat containing 7A##NM_001099281|HEATR7A|727957|HEAT repeat containing 7A##NM_032450|HEATR7A|727957|HEAT repeat containing 7A##AK093563|HEATR7A|727957|HEAT repeat containing 7A##BC057824|HEATR7A|727957|HEAT repeat containing 7A##BC067855|HEATR7A|727957|HEAT repeat containing 7A##BC092486|HEATR7A|727957|HEAT repeat containing 7A##BC003035|FAM203A|51236|family with sequence similarity 203, member A##BC009915|FAM203A|51236|family with sequence similarity 203, member A##NM_016458|FAM203A|51236|family with sequence similarity 203, member A##AK098226|FAM203A|51236|family with sequence similarity 203, member A##BC015471|FAM203A|51236|family with sequence similarity 203, member A##BC031273|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC018714|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC014082|MAF1|84232|MAF1 homolog (S. cerevisiae)##AL136937|MAF1|84232|MAF1 homolog (S. cerevisiae)##NM_001008271|SCXA|100129885|scleraxis homolog A (mouse)##NM_001080514|SCXB|642658|scleraxis homolog B (mouse)##BC003035|FAM203A|51236|family with sequence similarity 203, member A##BC009915|FAM203A|51236|family with sequence similarity 203, member A##NM_016458|FAM203A|51236|family with sequence similarity 203, member A##AK098226|FAM203A|51236|family with sequence similarity 203, member A##BC015471|FAM203A|51236|family with sequence similarity 203, member A##NM_001008271|SCXA|100129885|scleraxis homolog A (mouse)##NM_001080514|SCXB|642658|scleraxis homolog B (mouse)	0.99566	0.0	denovo_WM_7:5:0.456	denovo_WM_7:6:0.456
chr12	120639144	120639296	reg1001048.p1	10.810	+	AK001313 AK129823 M17885 TSC_hg19_v1_chr12_-_120638914 NM_001002 NM_053275	-258	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	-310	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	-319	-	BX648777 NM_025157	48739	-	TSC_hg19_v1_chr12_-_120703534 AK299486 BC136787 BC136794 BC144410 U14588 AB209034 AK298057 AK314204	64294	-	TSC_hg19_v1_chr12_-_120703574 NM_001080855 NM_001243756 NM_002859	64370	-	AK001313|RPLP0|6175|ribosomal protein, large, P0##AK129823|RPLP0|6175|ribosomal protein, large, P0##M17885|RPLP0|6175|ribosomal protein, large, P0##NM_001002|RPLP0|6175|ribosomal protein, large, P0##NM_053275|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##BX648777|PXN|5829|paxillin##NM_025157|PXN|5829|paxillin##AK299486|PXN|5829|paxillin##BC136787|PXN|5829|paxillin##BC136794|PXN|5829|paxillin##BC144410|PXN|5829|paxillin##U14588|PXN|5829|paxillin##AB209034|PXN|5829|paxillin##AK298057|PXN|5829|paxillin##AK314204|PXN|5829|paxillin##NM_001080855|PXN|5829|paxillin##NM_001243756|PXN|5829|paxillin##NM_002859|PXN|5829|paxillin	0.998939	1.037173	denovo_WM_7:72:0.310	CTCF.p2:-72:0.985	denovo_WM_7:73:0.310	denovo_WM_7:74:0.310
chr2	10522641	10522792	reg1001404.p1	10.810	+	AK000596 NM_134421	-78891	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-79667	+	BC093999 BC094001 NM_182626	-240737	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	65644	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	65736	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	307328	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	0.998892	0.0	
chr19	17981241	17981373	reg1001779.p1	10.808	+	TSC_hg19_v1_chr19_+_17970726 BC066319 AK297323 AK222647 AK311774 D28393 NM_000980 AK297358 AK300809 BC007512 BC071920 L05093 X80822 AB528676 CU688140	-10590	+	TSC_hg19_v1_chr19_-_17958822 U31601 AK296383 NM_000215 AK304392	-22461	-	TSC_hg19_v1_chr19_-_17958781 BC028068	-22518	-	BX648217 NM_000453 U66088 D87920	1523	+	TSC_hg19_v1_chr19_+_18043824 NM_001136203	62517	+	BC013949 NM_138442	64597	+	BC066319|RPL18A|6142|ribosomal protein L18a##AK297323|RPL18A|6142|ribosomal protein L18a##AK222647|RPL18A|6142|ribosomal protein L18a##AK311774|RPL18A|6142|ribosomal protein L18a##D28393|RPL18A|6142|ribosomal protein L18a##NM_000980|RPL18A|6142|ribosomal protein L18a##AK297358|RPL18A|6142|ribosomal protein L18a##AK300809|RPL18A|6142|ribosomal protein L18a##BC007512|RPL18A|6142|ribosomal protein L18a##BC071920|RPL18A|6142|ribosomal protein L18a##L05093|RPL18A|6142|ribosomal protein L18a##X80822|RPL18A|6142|ribosomal protein L18a##U31601|JAK3|3718|Janus kinase 3##AK296383|JAK3|3718|Janus kinase 3##NM_000215|JAK3|3718|Janus kinase 3##AK304392|JAK3|3718|Janus kinase 3##BC028068|JAK3|3718|Janus kinase 3##BX648217|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##NM_000453|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##U66088|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##D87920|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##NM_001136203|CCDC124|115098|coiled-coil domain containing 124##BC013949|CCDC124|115098|coiled-coil domain containing 124##NM_138442|CCDC124|115098|coiled-coil domain containing 124	0.999149	0.632384	CTCF.p2:-39:0.632
chr3	27753603	27753738	reg1001494.p2	10.803	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-227740	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-227845	-	AF047033 AF089726 NM_003615	-255426	-	AB031038 BC131712 NM_005442 AB463608 BC037568	10123	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	10531	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	529428	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	1.915343	0.987472	CTCF.p2:57:0.987	denovo_WM_7:-62:0.510
chrX	56825301	56825405	reg1001427.p1	10.803	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-69662	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-235302	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-566443	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	196618	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	322575	-	BC071694 NM_019003	338704	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.894678	CTCF.p2:70:0.895
chr16	79320966	79321107	reg1001382.p1	10.802	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-1187581	+	NM_001244755	-1258051	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-1264586	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	313579	-	AF125108 NM_130897 BC054892 BC035232	1253852	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1517011	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	0.997744	0.0	denovo_WM_7:-9:0.234	denovo_WM_7:-10:0.234	denovo_WM_7:-11:0.234	denovo_WM_7:-12:0.234
chr7	44672828	44672968	reg1001557.p1	10.801	+	TSC_hg19_v1_chr7_+_44646225 D10523 BC004964 BC014617	-26670	+	TSC_hg19_v1_chr7_+_44646197 AK314179	-26701	+	AK304439 TSC_hg19_v1_chr7_+_44646190	-26706	+	TSC_hg19_v1_chr7_+_44788175 BC110435	115284	+	TSC_hg19_v1_chr7_+_44788465 AK090415 NM_031449	115593	+	NM_174929 BC131780 BC016968 AY426594 AF357908	122919	+	D10523|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC004964|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC014617|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK314179|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK304439|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC110435|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AK090415|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_031449|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_174929|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC131780|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC016968|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AY426594|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AF357908|ZMIZ2|83637|zinc finger, MIZ-type containing 2	0.998096	0.0	
chr18	55289390	55289519	reg1001654.p2	10.796	+	TSC_hg19_v1_chr18_-_55289034 AK293985 NM_004539	-353	-	TSC_hg19_v1_chr18_-_55289015 AK297777 BC001687 AK222835 AK294364	-435	-	AK294763 TSC_hg19_v1_chr18_-_55289009 AJ000334	-445	-	NM_001242804 BC040476	8103	+	TSC_hg19_v1_chr18_-_55470548 NM_005603	181016	-	TSC_hg19_v1_chr18_+_55711515 NM_001144967 NM_001243960 NM_015277	422082	+	AK293985|NARS|4677|asparaginyl-tRNA synthetase##NM_004539|NARS|4677|asparaginyl-tRNA synthetase##AK297777|NARS|4677|asparaginyl-tRNA synthetase##BC001687|NARS|4677|asparaginyl-tRNA synthetase##AK222835|NARS|4677|asparaginyl-tRNA synthetase##AK294364|NARS|4677|asparaginyl-tRNA synthetase##AK294763|NARS|4677|asparaginyl-tRNA synthetase##AJ000334|NARS|4677|asparaginyl-tRNA synthetase##NM_001242804|LOC100505549|100505549|uncharacterized LOC100505549##BC040476|LOC100505549|100505549|uncharacterized LOC100505549##NM_005603|ATP8B1|5205|ATPase, aminophospholipid transporter, class I, type 8B, member 1##NM_001144967|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001243960|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_015277|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like	0.998449	0.0	
chr19	48081043	48081200	reg1001388.p1	10.796	+	NM_001101419	-22009	-	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-62706	-	BC007432 TSC_hg19_v1_chr19_-_48018290 AK292244 AK310114 AY927608 BC001165 AY927609 BC091511	-62825	-	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	30323	+	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	135529	+	NM_015710 TSC_hg19_v1_chr19_+_48248797	167673	+	NM_001101419|ZNF541|84215|zinc finger protein 541##BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC007432|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK292244|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310114|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC001165|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AY927609|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC091511|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2##NM_015710|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2	0.839638	0.0	denovo_WM_7:31:0.535
chr6	149080984	149081117	reg1001642.p1	10.793	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-12841	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-416859	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-417060	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	558053	+	AK315038 NM_015093 AK307650	558391	+	AY340238 NM_001002255 BC130305 HQ258040	640458	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.999644	0.0	
chr18	48678723	48678897	reg1001719.p2	10.787	+	TSC_hg19_v1_chr18_+_48556613 AK290770 BC002379	-122204	+	TSC_hg19_v1_chr18_+_48556582 NM_005359	-122276	+	TSC_hg19_v1_chr18_+_48494409 AK024822 AF308695 AK303027 AK310911 BC014624 AK223507 AB029151	-184389	+	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	44416	-	AY950679 TSC_hg19_v1_chr18_-_48723734	44902	-	TSC_hg19_v1_chr18_-_48724033 NM_016626	45230	-	AK290770|SMAD4|4089|SMAD family member 4##BC002379|SMAD4|4089|SMAD family member 4##NM_005359|SMAD4|4089|SMAD family member 4##AK024822|ELAC1|55520|elaC homolog 1 (E. coli)##AF308695|ELAC1|55520|elaC homolog 1 (E. coli)##AK310911|ELAC1|55520|elaC homolog 1 (E. coli)##BC014624|ELAC1|55520|elaC homolog 1 (E. coli)##AK223507|ELAC1|55520|elaC homolog 1 (E. coli)##AB029151|ELAC1|55520|elaC homolog 1 (E. coli)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)	0.962254	0.349456	denovo_WM_7:22:0.722	CTCF.p2:-49:0.349
chr3	7253600	7253729	reg1001621.p2	10.787	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-350766	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-350865	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-2024173	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	1289666	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	1289851	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	1289917	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	0.979419	0.0	denovo_WM_7:-20:0.867
chr1	32573368	32573548	reg1001145.p1	10.786	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	-34884	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	-34954	+	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	-93960	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	189	+	TSC_hg19_v1_chr1_+_32645315 AL832636 AL832338	71829	+	TSC_hg19_v1_chr1_+_32645343 AK096939 NM_175852	71883	+	AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AL832636|TXLNA|200081|taxilin alpha##AL832338|TXLNA|200081|taxilin alpha##AK096939|TXLNA|200081|taxilin alpha##NM_175852|TXLNA|200081|taxilin alpha	0.991521	0.0	denovo_WM_7:-100:0.557	denovo_WM_7:-101:0.279
chr10	104412469	104412604	reg1001599.p2	10.784	+	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	-8252	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-148717	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-148817	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	61561	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	61809	+	TSC_hg19_v1_chr10_+_104503704 AK300871	91134	+	NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2##AK300871|C10orf26|54838|chromosome 10 open reading frame 26	0.998338	0.0	denovo_WM_7:33:0.457	denovo_WM_7:34:0.457
chr18	21465843	21465981	reg1002200.p1	10.782	+	TSC_hg19_v1_chr18_+_21452983 NM_000227 NM_001127718 X85107 X84392 AY327114 L34155	-12901	+	TSC_hg19_v1_chr18_+_21269563 BC093406 NM_001127717 NM_198129 AY327115 AY327116	-196325	+	TSC_hg19_v1_chr18_+_21269416 AK096422	-196498	+	AK091080 AX746769 NM_153211 BC121034 BC121035	106882	+	TSC_hg19_v1_chr18_+_21594449 BC016833 NM_001135993 NM_001243425	128487	+	TSC_hg19_v1_chr18_+_21594754 AK074875	128844	+	NM_000227|LAMA3|3909|laminin, alpha 3##NM_001127718|LAMA3|3909|laminin, alpha 3##X85107|LAMA3|3909|laminin, alpha 3##X84392|LAMA3|3909|laminin, alpha 3##AY327114|LAMA3|3909|laminin, alpha 3##L34155|LAMA3|3909|laminin, alpha 3##BC093406|LAMA3|3909|laminin, alpha 3##NM_001127717|LAMA3|3909|laminin, alpha 3##NM_198129|LAMA3|3909|laminin, alpha 3##AY327115|LAMA3|3909|laminin, alpha 3##AY327116|LAMA3|3909|laminin, alpha 3##AK096422|LAMA3|3909|laminin, alpha 3##AK091080|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_153211|TTC39C|125488|tetratricopeptide repeat domain 39C##BC121034|TTC39C|125488|tetratricopeptide repeat domain 39C##BC121035|TTC39C|125488|tetratricopeptide repeat domain 39C##BC016833|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_001135993|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_001243425|TTC39C|125488|tetratricopeptide repeat domain 39C##AK074875|TTC39C|125488|tetratricopeptide repeat domain 39C	0.572922	0.0	denovo_WM_7:-8:0.573
chr16	88812133	88812264	reg1001790.p1	10.766	+	TSC_hg19_v1_chr16_+_88772910 BC121805 BC125269 NM_001012759 NM_001012762 BC157881 AK299521 BC108659 BC021056 BC063512 BC080540	-39275	+	TSC_hg19_v1_chr16_-_88772809 NM_178841	-39376	-	CU680704 HQ258016 TSC_hg19_v1_chr16_-_88772797 BC013948 AK290920 BC017226 NM_001171815	-39430	-	NM_001142864 AB384448 TSC_hg19_v1_chr16_-_88851456	39220	-	AB053172 NM_030928 TSC_hg19_v1_chr16_+_88870207	57999	+	TSC_hg19_v1_chr16_+_88870215 AF321125 BC000137 BC009410 BC008860 BC008676	58082	+	BC121805|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC125269|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012759|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012762|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC157881|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##AK299521|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC108659|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC021056|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC063512|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC080540|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_178841|RNF166|115992|ring finger protein 166##HQ258016|RNF166|115992|ring finger protein 166##BC013948|RNF166|115992|ring finger protein 166##AK290920|RNF166|115992|ring finger protein 166##BC017226|RNF166|115992|ring finger protein 166##NM_001171815|RNF166|115992|ring finger protein 166##NM_001142864|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##AB384448|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##AB053172|CDT1|81620|chromatin licensing and DNA replication factor 1##NM_030928|CDT1|81620|chromatin licensing and DNA replication factor 1##AF321125|CDT1|81620|chromatin licensing and DNA replication factor 1##BC000137|CDT1|81620|chromatin licensing and DNA replication factor 1##BC009410|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008860|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008676|CDT1|81620|chromatin licensing and DNA replication factor 1	0.998167	0.0	
chr14	75304917	75305076	reg1001912.p1	10.764	+	TSC_hg19_v1_chr14_+_75283667 BC023570	-21296	+	TSC_hg19_v1_chr14_+_75230066 AK095760 NM_019589	-74964	+	TSC_hg19_v1_chr14_+_75179883 NM_015962 AK290666 BC022361 AK021636 BC080600 BX248271	-125121	+	BC105720 BC105721 BC105927 NM_001080408 NM_001243007	25539	-	TSC_hg19_v1_chr14_+_75348624 NM_001244883 NM_001933 AK289414 BX248276 AK299505 AK316463 AK300396 BC000302 BC001922 BC002735 BX248764 D16373 CR456727 CU674146 L37418 BX248774	43629	+	NM_031464	84148	-	BC023570|YLPM1|56252|YLP motif containing 1##AK095760|YLPM1|56252|YLP motif containing 1##NM_019589|YLPM1|56252|YLP motif containing 1##NM_015962|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK290666|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC022361|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK021636|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC080600|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BX248271|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC105720|PROX2|283571|prospero homeobox 2##BC105721|PROX2|283571|prospero homeobox 2##BC105927|PROX2|283571|prospero homeobox 2##NM_001080408|PROX2|283571|prospero homeobox 2##NM_001243007|PROX2|283571|prospero homeobox 2##NM_001244883|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_001933|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK289414|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248276|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK299505|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK316463|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK300396|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC000302|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC001922|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC002735|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248764|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##D16373|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##CR456727|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##L37418|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248774|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_031464|RPS6KL1|83694|ribosomal protein S6 kinase-like 1	0.995637	0.0	denovo_WM_7:-11:0.840
chr7	2891157	2891305	reg1001701.p2	10.764	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-7423	-	AK289723 AB075830 BC146753 NM_133463	-172073	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-219528	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	192231	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	449768	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1830607	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	0.9988	0.0	denovo_WM_7:-8:0.371
chr1	226216827	226216983	reg1001540.p1	10.759	+	TSC_hg19_v1_chr1_-_226187067 NM_152608	-29824	-	TSC_hg19_v1_chr1_-_226187045 AK291008 AK127780 BC071563 AK308441	-29869	-	TSC_hg19_v1_chr1_-_226187023 AK092701 AX747679 BX648319	-29883	-	AK311905 NM_002107 TSC_hg19_v1_chr1_+_226250410	33504	+	TSC_hg19_v1_chr1_+_226250416 D28384	33511	+	TSC_hg19_v1_chr1_+_226250421 AK291102 AK293541 BC029405 BC067757 BC095447 M11354 BC066901	33521	+	NM_152608|C1orf55|163859|chromosome 1 open reading frame 55##AK291008|C1orf55|163859|chromosome 1 open reading frame 55##AK127780|C1orf55|163859|chromosome 1 open reading frame 55##BC071563|C1orf55|163859|chromosome 1 open reading frame 55##AK308441|C1orf55|163859|chromosome 1 open reading frame 55##AK092701|C1orf55|163859|chromosome 1 open reading frame 55##BX648319|C1orf55|163859|chromosome 1 open reading frame 55##AK311905|H3F3A|3020|H3 histone, family 3A##NM_002107|H3F3A|3020|H3 histone, family 3A##D28384|H3F3A|3020|H3 histone, family 3A##AK291102|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##AK293541|H3F3A|3020|H3 histone, family 3A##BC029405|H3F3A|3020|H3 histone, family 3A##BC067757|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC095447|H3F3A|3020|H3 histone, family 3A##M11354|H3F3A|3020|H3 histone, family 3A##BC066901|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4	0.995653	0.0	denovo_WM_7:5:0.983
chr19	19570090	19570260	reg1001628.p1	10.759	+	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	-73469	+	TSC_hg19_v1_chr19_+_19431662 AB385396	-138511	+	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	-138541	+	AB464723 DQ891603 DQ894797 AF329483 AK058166 AK313767 BC014611 NM_032037 AF348077	56190	-	TSC_hg19_v1_chr19_+_19626536 AF261134	56390	+	NM_015965 TSC_hg19_v1_chr19_+_19627033 BC009189 AK298891 AK293859 AK293965 BC000589 AF286697	56861	+	NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A##NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##DQ891603|TSSK6|83983|testis-specific serine kinase 6##DQ894797|TSSK6|83983|testis-specific serine kinase 6##AF329483|TSSK6|83983|testis-specific serine kinase 6##AK058166|TSSK6|83983|testis-specific serine kinase 6##AK313767|TSSK6|83983|testis-specific serine kinase 6##BC014611|TSSK6|83983|testis-specific serine kinase 6##NM_032037|TSSK6|83983|testis-specific serine kinase 6##AF348077|TSSK6|83983|testis-specific serine kinase 6##AF261134|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##NM_015965|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC009189|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AK293859|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC000589|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AF286697|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	0.99899	0.0	denovo_WM_7:9:0.518	denovo_WM_7:10:0.462
chr12	80267162	80267328	reg1001632.p1	10.756	+	U63809 TSC_hg19_v1_chr12_-_80084784 NM_002583	-182480	-	AB590922 CR536549 BC007018 TSC_hg19_v1_chr12_-_80084318	-183030	-	CR627387 NM_001135806 AK308743	-827794	+	AK302692 NM_001143886	40445	-	TSC_hg19_v1_chr12_-_80328878 BC062560 AY380574 BC111752 D87930 AK314193 NM_001244992 BC047898 BC000812	61555	-	TSC_hg19_v1_chr12_-_80328937 NM_002480	61721	-	U63809|PAWR|5074|PRKC, apoptosis, WT1, regulator##NM_002583|PAWR|5074|PRKC, apoptosis, WT1, regulator##CR536549|PAWR|5074|PRKC, apoptosis, WT1, regulator##BC007018|PAWR|5074|PRKC, apoptosis, WT1, regulator##CR627387|SYT1|6857|synaptotagmin I##NM_001135806|SYT1|6857|synaptotagmin I##AK308743|SYT1|6857|synaptotagmin I##AK302692|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001143886|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC062560|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##AY380574|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC111752|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##D87930|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##AK314193|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001244992|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC047898|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC000812|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_002480|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A	0.994633	0.0	
chr15	74265430	74265554	reg1001774.p1	10.756	+	TSC_hg19_v1_chr15_+_74218979 DQ893331	-46451	+	TSC_hg19_v1_chr15_+_74218813 BC015090 L21186	-46677	+	TSC_hg19_v1_chr15_+_74218802 BC068542 AK303982 AK314222	-46691	+	AL109664 AF074953 AL109665 CR542089 DQ064605 AB587381 AK300799 AK222665 AK075244 Y16522 BC034379 BC065249 NM_004809 AF111800 AK302051 TSC_hg19_v1_chr15_-_74284672 AF156557	19111	-	TSC_hg19_v1_chr15_-_74286928 AK091531	21442	-	TSC_hg19_v1_chr15_+_74287096 NM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250 X63131 AB209411 S50913 M73778 AF230401 AF230402 AF230403 AF230404 AF230405 AF230406 AF230407 AF230408 AF230409 AF230410 AF230411 BC000080 BC020994	21558	+	DQ893331|LOXL1|4016|lysyl oxidase-like 1##BC015090|LOXL1|4016|lysyl oxidase-like 1##L21186|LOXL1|4016|lysyl oxidase-like 1##BC068542|LOXL1|4016|lysyl oxidase-like 1##AK303982|LOXL1|4016|lysyl oxidase-like 1##AK314222|LOXL1|4016|lysyl oxidase-like 1##AL109664|STOML1|9399|stomatin (EPB72)-like 1##AF074953|STOML1|9399|stomatin (EPB72)-like 1##AL109665|STOML1|9399|stomatin (EPB72)-like 1##CR542089|STOML1|9399|stomatin (EPB72)-like 1##DQ064605|STOML1|9399|stomatin (EPB72)-like 1##AK300799|STOML1|9399|stomatin (EPB72)-like 1##AK222665|STOML1|9399|stomatin (EPB72)-like 1##AK075244|STOML1|9399|stomatin (EPB72)-like 1##Y16522|STOML1|9399|stomatin (EPB72)-like 1##BC034379|STOML1|9399|stomatin (EPB72)-like 1##BC065249|STOML1|9399|stomatin (EPB72)-like 1##NM_004809|STOML1|9399|stomatin (EPB72)-like 1##AF111800|STOML1|9399|stomatin (EPB72)-like 1##AK302051|STOML1|9399|stomatin (EPB72)-like 1##AF156557|STOML1|9399|stomatin (EPB72)-like 1##AK091531|STOML1|9399|stomatin (EPB72)-like 1##NM_002675|PML|5371|promyelocytic leukemia##NM_033238|PML|5371|promyelocytic leukemia##NM_033239|PML|5371|promyelocytic leukemia##NM_033240|PML|5371|promyelocytic leukemia##NM_033244|PML|5371|promyelocytic leukemia##NM_033246|PML|5371|promyelocytic leukemia##NM_033247|PML|5371|promyelocytic leukemia##NM_033249|PML|5371|promyelocytic leukemia##NM_033250|PML|5371|promyelocytic leukemia##X63131|PML|5371|promyelocytic leukemia##AB209411|PML|5371|promyelocytic leukemia##S50913|PML|5371|promyelocytic leukemia##M73778|PML|5371|promyelocytic leukemia##AF230401|PML|5371|promyelocytic leukemia##AF230402|PML|5371|promyelocytic leukemia##AF230403|PML|5371|promyelocytic leukemia##AF230404|PML|5371|promyelocytic leukemia##AF230405|PML|5371|promyelocytic leukemia##AF230406|PML|5371|promyelocytic leukemia##AF230407|PML|5371|promyelocytic leukemia##AF230408|PML|5371|promyelocytic leukemia##AF230409|PML|5371|promyelocytic leukemia##AF230410|PML|5371|promyelocytic leukemia##AF230411|PML|5371|promyelocytic leukemia##BC000080|PML|5371|promyelocytic leukemia##BC020994|PML|5371|promyelocytic leukemia	0.0	0.998454	CTCF.p2:-38:0.998
chr5	157986753	157986893	reg1001929.p1	10.756	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-700733	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-802443	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-816083	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	539634	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	539919	-	AK304228 NM_001199382	647825	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.997941	0.0	denovo_WM_7:-2:0.984
chr10	63842968	63843148	reg1001627.p2	10.753	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	-33962	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-181627	+	NM_032199	-182046	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	185481	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	290985	+	AJ505150 NM_199452	437148	+	BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365	1.99364	0.0	denovo_WM_7:-6:0.894	denovo_WM_7:21:0.269	denovo_WM_7:22:0.693
chr8	124287706	124287843	reg1001142.p2	10.747	+	TSC_hg19_v1_chr8_-_124286697 NM_001017926 NM_001204180 NM_007222	-1083	-	AF195766 TSC_hg19_v1_chr8_-_124286514 AK094451 BC040481	-1251	-	TSC_hg19_v1_chr8_-_124253618 AK222660 GQ129275 GQ129276 BC067796 AK027731 NM_032847	-34164	-	AL833653 AY598335 BC113656 BC143716 TSC_hg19_v1_chr8_-_124408640 BC007123	120775	-	TSC_hg19_v1_chr8_-_124408665 BC112942	120891	-	TSC_hg19_v1_chr8_-_124408671 AK097133	120903	-	NM_001017926|ZHX1|11244|zinc fingers and homeoboxes 1##NM_001204180|ZHX1-C8ORF76|100533106|ZHX1-C8ORF76 readthrough##NM_007222|ZHX1|11244|zinc fingers and homeoboxes 1##AF195766|ZHX1|11244|zinc fingers and homeoboxes 1##AK094451|ZHX1|11244|zinc fingers and homeoboxes 1##BC040481|ZHX1|11244|zinc fingers and homeoboxes 1##AK222660|C8orf76|84933|chromosome 8 open reading frame 76##GQ129275|C8orf76|84933|chromosome 8 open reading frame 76##GQ129276|C8orf76|84933|chromosome 8 open reading frame 76##BC067796|C8orf76|84933|chromosome 8 open reading frame 76##AK027731|C8orf76|84933|chromosome 8 open reading frame 76##NM_032847|C8orf76|84933|chromosome 8 open reading frame 76##AL833653|ATAD2|29028|ATPase family, AAA domain containing 2##AY598335|ATAD2|29028|ATPase family, AAA domain containing 2##BC113656|ATAD2|29028|ATPase family, AAA domain containing 2##BC143716|ATAD2|29028|ATPase family, AAA domain containing 2##BC007123|ATAD2|29028|ATPase family, AAA domain containing 2##BC112942|ATAD2|29028|ATPase family, AAA domain containing 2##AK097133|ATAD2|29028|ATPase family, AAA domain containing 2	0.998546	0.0	denovo_WM_7:8:0.494	denovo_WM_7:9:0.494
chr20	45978913	45979077	reg1000313.p1	10.745	+	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-2348	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-51426	-	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-455443	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	6493	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	151627	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	151689	+	DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3	0.986732	0.0	
chr7	125053040	125053188	reg1001179.p1	10.745	+	NM_001042594 NM_015450	-483078	-	BC130600 BC130604 NM_001024603	-622312	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-647318	-	NM_000845	1830454	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	1839251	-	TSC_hg19_v1_chr7_-_126893165 AK290197	1840038	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.423393	0.0	denovo_WM_7:-22:0.260
chr5	172436356	172436536	reg1001561.p2	10.744	+	TSC_hg19_v1_chr5_+_172410833 CR456856 CR542131	-25602	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	-25664	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	-49998	+	TSC_hg19_v1_chr5_+_172483354 BX647768 NM_001168393 NM_001168394 NM_153607 AK300043 AY139008 BC041709 AY174896 AK124117 BX647573 AK291677	46938	+	TSC_hg19_v1_chr5_+_172484383 AK297424	47937	+	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	135050	+	CR456856|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR542131|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##BX647768|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168393|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168394|C5orf41|153222|chromosome 5 open reading frame 41##NM_153607|C5orf41|153222|chromosome 5 open reading frame 41##AK300043|C5orf41|153222|chromosome 5 open reading frame 41##AY139008|C5orf41|153222|chromosome 5 open reading frame 41##BC041709|C5orf41|153222|chromosome 5 open reading frame 41##AY174896|C5orf41|153222|chromosome 5 open reading frame 41##AK124117|C5orf41|153222|chromosome 5 open reading frame 41##BX647573|C5orf41|153222|chromosome 5 open reading frame 41##AK291677|C5orf41|153222|chromosome 5 open reading frame 41##AK297424|C5orf41|153222|chromosome 5 open reading frame 41##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1	1.055228	0.0	
chr5	78201640	78201820	reg1001794.p2	10.742	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-257164	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-356707	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-395534	-	J05225 TSC_hg19_v1_chr5_-_78281101	79358	-	AK290865 TSC_hg19_v1_chr5_-_78281134	79403	-	TSC_hg19_v1_chr5_-_78281142 AK314903	79416	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	1.791755	0.0	denovo_WM_7:11:0.436	denovo_WM_7:26:0.403
chr2	38968088	38968266	reg1001743.p1	10.740	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-74922	+	NM_138801 TSC_hg19_v1_chr2_+_38893054	-75125	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-138036	-	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	10339	-	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	37178	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	134851	-	BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	0.993792	0.52487	CTCF.p2:24:0.525	denovo_WM_7:-42:0.248	denovo_WM_7:-43:0.248	denovo_WM_7:-44:0.248	denovo_WM_7:-45:0.248
chr6_qbl_hap6	3091501	3091616	reg1001768.p1	10.740	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.990069	0.801063	CTCF.p2:2:0.801	denovo_WM_7:21:0.657	denovo_WM_7:22:0.329	denovo_WM_7:36:0.332	denovo_WM_7:37:0.660
chr17	12885584	12885735	reg1002122.p1	10.739	+	TSC_hg19_v1_chr17_+_12692837 NM_014859 AB014572	-192842	+	AK097821 NM_001146313	-262054	+	TSC_hg19_v1_chr17_+_12569389 BC126307 BC143391 AF532596	-316225	+	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	35617	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	35660	-	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	35697	-	NM_014859|ARHGAP44|9912|Rho GTPase activating protein 44##AB014572|ARHGAP44|9912|Rho GTPase activating protein 44##AK097821|MYOCD|93649|myocardin##NM_001146313|MYOCD|93649|myocardin##BC126307|MYOCD|93649|myocardin##BC143391|MYOCD|93649|myocardin##AF532596|MYOCD|93649|myocardin##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)	0.939373	0.0	denovo_WM_7:-13:0.556
chrX	19791970	19792150	reg1001927.p3	10.738	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-103004	-	NM_001001671	-258682	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-429978	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	25815	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	25852	-	TSC_hg19_v1_chrX_-_19905450 AY542305	113403	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.992918	0.0	denovo_WM_7:-61:0.234	denovo_WM_7:-62:0.650	denovo_WM_7:-77:0.742
chr20	8732254	8732382	reg1001813.p1	10.735	+	TSC_hg19_v1_chr20_+_8112912 AB011153 AK310597 BC117231 AX721082 AJ278313 AJ278314 BC069420 NM_015192 NM_182734 AB463171 HQ258537	-619288	+	TSC_hg19_v1_chr20_-_8000461 AK075404 BC044777	-731846	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	-731911	-	TSC_hg19_v1_chr20_+_9049689 AK307837 NM_001172646	317365	+	AK307482 TSC_hg19_v1_chr20_+_9049806	317480	+	NM_182797 BC117458 BC143868	465740	+	AB011153|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AK310597|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##BC117231|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AJ278313|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AJ278314|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##BC069420|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##NM_015192|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##NM_182734|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##HQ258537|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AK075404|TMX4|56255|thioredoxin-related transmembrane protein 4##BC044777|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4##AK307837|PLCB4|5332|phospholipase C, beta 4##NM_001172646|PLCB4|5332|phospholipase C, beta 4##AK307482|PLCB4|5332|phospholipase C, beta 4##NM_182797|PLCB4|5332|phospholipase C, beta 4##BC117458|PLCB4|5332|phospholipase C, beta 4##BC143868|PLCB4|5332|phospholipase C, beta 4	0.0	1.040697	CTCF.p2:-18:0.994
chrX	135670280	135670431	reg1001663.p1	10.735	+	BC000045 NM_016267 AK309912 BC003362 AF137387	-55988	+	BC009896 NM_014500 TSC_hg19_v1_chrX_+_135579729 AK299403 AK225870 U76992 CU679521 EU176345 BT006886	-90599	+	AB209303 NM_001163280 TSC_hg19_v1_chrX_+_135579394	-91038	+	BC071754 NM_000074 AK292637 X68550 X67878 L07414 BC074950 X96710 Z15017 FN298241 CU687160 AB590912 AF529195 AY197739	60016	+	AK129909 TSC_hg19_v1_chrX_-_135749484	79111	-	AK294929 TSC_hg19_v1_chrX_-_135849503 AK295709 AK299861	179152	-	BC000045|VGLL1|51442|vestigial like 1 (Drosophila)##NM_016267|VGLL1|51442|vestigial like 1 (Drosophila)##AK309912|VGLL1|51442|vestigial like 1 (Drosophila)##BC003362|VGLL1|51442|vestigial like 1 (Drosophila)##AF137387|VGLL1|51442|vestigial like 1 (Drosophila)##BC009896|HTATSF1|27336|HIV-1 Tat specific factor 1##NM_014500|HTATSF1|27336|HIV-1 Tat specific factor 1##AK299403|HTATSF1|27336|HIV-1 Tat specific factor 1##AK225870|HTATSF1|27336|HIV-1 Tat specific factor 1##U76992|HTATSF1|27336|HIV-1 Tat specific factor 1##EU176345|HTATSF1|27336|HIV-1 Tat specific factor 1##BT006886|HTATSF1|27336|HIV-1 Tat specific factor 1##AB209303|HTATSF1|27336|HIV-1 Tat specific factor 1##NM_001163280|HTATSF1|27336|HIV-1 Tat specific factor 1##BC071754|CD40LG|959|CD40 ligand##NM_000074|CD40LG|959|CD40 ligand##AK292637|CD40LG|959|CD40 ligand##X68550|CD40LG|959|CD40 ligand##X67878|CD40LG|959|CD40 ligand##L07414|CD40LG|959|CD40 ligand##BC074950|CD40LG|959|CD40 ligand##Z15017|CD40LG|959|CD40 ligand##FN298241|CD40LG|959|CD40 ligand##AF529195|CD40LG|959|CD40 ligand##AY197739|CD40LG|959|CD40 ligand##AK129909|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##AK294929|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##AK295709|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##AK299861|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	1.501963	0.0	denovo_WM_7:-1:0.548	denovo_WM_7:13:0.506
chr19	38918118	38918298	reg1001457.p2	10.732	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-1336	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-24307	+	TSC_hg19_v1_chr19_+_38893817 BC100033	-24395	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	6136	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	190380	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	191505	+	AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##BC100033|FAM98C|147965|family with sequence similarity 98, member C##NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.383932	0.0	denovo_WM_7:20:0.312
chr12	51058526	51058706	reg1001513.p2	10.729	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-159717	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-159861	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-189029	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	99262	+	TSC_hg19_v1_chr12_+_51158275 AK299240	99642	+	NM_182559 BC035123 BC048112 CU690554	178107	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	1.96749	0.0	denovo_WM_7:11:0.241	denovo_WM_7:12:0.207	denovo_WM_7:31:0.212	denovo_WM_7:32:0.249
chr1	199468063	199468195	reg1001950.p1	10.728	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-561582	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-859799	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-859904	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	528740	+	AK316513 TSC_hg19_v1_chr1_+_200011716	543595	+	NM_001105517	714526	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	1.680062	0.0	denovo_WM_7:12:0.233	denovo_WM_7:14:0.227	denovo_WM_7:-84:0.449	denovo_WM_7:-85:0.449
chr16	16055551	16055731	reg1001862.p3	10.722	+	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	-12277	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-73156	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	-73188	-	TSC_hg19_v1_chr16_+_16146613 HQ917065	90977	+	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	261679	-	TSC_hg19_v1_chr16_+_16326401 NM_001004067	270756	+	L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AL832498|FOPNL|123811|FGFR1OP N-terminal like##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001004067|NOMO3|408050|NODAL modulator 3	0.999819	0.0	
chr10	88844237	88844383	reg1002048.p1	10.720	+	NM_001146157 BC171878 BC171915	-64260	+	TSC_hg19_v1_chr10_-_88730968 AK128041	-113313	-	AK097165 NM_133447	-113813	+	AK122685 TSC_hg19_v1_chr10_-_88853845 AK294685	9525	-	TSC_hg19_v1_chr10_-_88854537 GU727646 AB590770 M37154 X07674 X07769	10215	-	TSC_hg19_v1_chr10_-_88854578 BC112946 BC040132 J03248	10268	-	NM_001146157|FAM25A|643161|family with sequence similarity 25, member A##BC171878|FAM25A|643161|family with sequence similarity 25, member A##BC171915|FAM25A|643161|family with sequence similarity 25, member A##AK128041|LOC100133190|100133190|uncharacterized LOC100133190##AK097165|AGAP11|119385|ankyrin repeat and GTPase domain Arf GTPase activating protein 11##NM_133447|AGAP11|119385|ankyrin repeat and GTPase domain Arf GTPase activating protein 11##AK122685|GLUD1|2746|glutamate dehydrogenase 1##AK294685|GLUD1|2746|glutamate dehydrogenase 1##GU727646|GLUD1|2746|glutamate dehydrogenase 1##M37154|GLUD1|2746|glutamate dehydrogenase 1##X07674|GLUD1|2746|glutamate dehydrogenase 1##X07769|GLUD1|2746|glutamate dehydrogenase 1##BC112946|GLUD1|2746|glutamate dehydrogenase 1##BC040132|GLUD1|2746|glutamate dehydrogenase 1##J03248|GLUD1|2746|glutamate dehydrogenase 1	0.083071	0.0	
chr7	149319081	149319225	reg1002002.p1	10.720	+	TSC_hg19_v1_chr7_-_149194899 NM_001163474 NM_152557 AK128244	-124255	-	TSC_hg19_v1_chr7_-_149194830 AK291814	-124313	-	TSC_hg19_v1_chr7_-_149194795 BC068505 BC035586	-124368	-	AB590454 AK295771 TSC_hg19_v1_chr7_-_149321793 AK022762	2589	-	TSC_hg19_v1_chr7_-_149321856 BC047675	2701	-	TSC_hg19_v1_chr7_+_149412043 BC142722 BC146667 AB058765 BC150330 BC152409 NM_032534	92934	+	NM_001163474|ZNF746|155061|zinc finger protein 746##NM_152557|ZNF746|155061|zinc finger protein 746##AK128244|ZNF746|155061|zinc finger protein 746##AK291814|ZNF746|155061|zinc finger protein 746##BC068505|ZNF746|155061|zinc finger protein 746##BC035586|ZNF746|155061|zinc finger protein 746##AK295771|ZNF767|79970|zinc finger family member 767##AK022762|ZNF767|79970|zinc finger family member 767##BC047675|ZNF767|79970|zinc finger family member 767##BC142722|KRBA1|84626|KRAB-A domain containing 1##BC146667|KRBA1|84626|KRAB-A domain containing 1##AB058765|KRBA1|84626|KRAB-A domain containing 1##BC150330|KRBA1|84626|KRAB-A domain containing 1##BC152409|KRBA1|84626|KRAB-A domain containing 1##NM_032534|KRBA1|84626|KRAB-A domain containing 1	0.9986	0.0	denovo_WM_7:-6:0.802
chr19	8477820	8477967	reg1002058.p1	10.718	+	TSC_hg19_v1_chr19_-_8455589 BC014506	-22321	-	TSC_hg19_v1_chr19_+_8455285 AK297498 AK225642 AK225036 D38516 X79780 BC110081 AB590872 AF498947 BT019535 BT019536 CR536494 CR541691 GQ129215 GQ129216	-22611	+	TSC_hg19_v1_chr19_+_8455246 AK312994	-22642	+	TSC_hg19_v1_chr19_+_8478188 NM_001005415 NM_001005416 NM_016496 AF151074	335	+	TSC_hg19_v1_chr19_+_8509599 AF061832	31729	+	NM_005968 NM_031203 TSC_hg19_v1_chr19_+_8509858 BC000138 AK293612	31937	+	BC014506|LOC100507567|100507567|uncharacterized LOC100507567##AK297498|RAB11B|9230|RAB11B, member RAS oncogene family##AK225642|RAB11B|9230|RAB11B, member RAS oncogene family##AK225036|RAB11B|9230|RAB11B, member RAS oncogene family##D38516|RAB11B|9230|RAB11B, member RAS oncogene family##X79780|RAB11B|9230|RAB11B, member RAS oncogene family##BC110081|RAB11B|9230|RAB11B, member RAS oncogene family##AF498947|RAB11B|9230|RAB11B, member RAS oncogene family##BT019535|RAB11B|9230|RAB11B, member RAS oncogene family##BT019536|RAB11B|9230|RAB11B, member RAS oncogene family##CR536494|RAB11B|9230|RAB11B, member RAS oncogene family##CR541691|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129215|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129216|RAB11B|9230|RAB11B, member RAS oncogene family##AK312994|RAB11B|9230|RAB11B, member RAS oncogene family##NM_001005415|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##NM_001005416|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##NM_016496|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##AF151074|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##AF061832|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##NM_005968|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##NM_031203|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##BC000138|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M	0.817949	0.225942	denovo_WM_7:-20:0.780	CTCF.p2:34:0.226
chr15	89464377	89464501	reg1001844.p1	10.715	+	BC003610 AK095908 AK222735 AK223182 AK304627 AK310357 AK312640 U58516 AY141974 TSC_hg19_v1_chr15_-_89456611 NM_001114614 NM_005928	-7800	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	-7879	-	AY358500 AY037161 TSC_hg19_v1_chr15_-_89438761 BC053689 AY262759 NM_178232 AK292055 BC062320 AK292103	-25641	-	NM_007011 NM_152924	166941	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	167209	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	167264	+	BC003610|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK095908|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK222735|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK223182|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK304627|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK310357|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK312640|MFGE8|4240|milk fat globule-EGF factor 8 protein##U58516|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY141974|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_001114614|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_005928|MFGE8|4240|milk fat globule-EGF factor 8 protein##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY358500|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY037161|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC053689|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY262759|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_178232|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292055|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC062320|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292103|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_007011|ABHD2|11057|abhydrolase domain containing 2##NM_152924|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2	0.996248	0.0	
chr18	68118030	68118160	reg1001609.p2	10.712	+	TSC_hg19_v1_chr18_+_67956280 BC020082	-161834	+	NM_004232 TSC_hg19_v1_chr18_+_67956194	-161928	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	-245157	-	BC110843 BC035789 TSC_hg19_v1_chr18_-_70210781 AK291364	2092680	-	NM_182511 TSC_hg19_v1_chr18_-_70211738	2093635	-	AF448839 NM_138999	2414838	-	BC020082|SOCS6|9306|suppressor of cytokine signaling 6##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##BC110843|CBLN2|147381|cerebellin 2 precursor##BC035789|CBLN2|147381|cerebellin 2 precursor##AK291364|CBLN2|147381|cerebellin 2 precursor##NM_182511|CBLN2|147381|cerebellin 2 precursor##AF448839|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##NM_138999|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1	0.999875	0.298959	CTCF.p2:-16:0.299
chr9	4518239	4518391	reg1002088.p1	10.712	+	TSC_hg19_v1_chr9_+_4490467 NM_004170 BC033040 AB008536 U08989 AK313013 U06469 U03506 AB527299 DQ892425 DQ895639 CU689602	-27878	+	TSC_hg19_v1_chr9_-_4300028 AK075059 NM_001042413	-218284	-	DQ438877 DQ438881 DQ438886 DQ438891 DQ438898 DQ438901 TSC_hg19_v1_chr9_-_4299970	-218352	-	TSC_hg19_v1_chr9_+_4662298 BC038108 NM_203453 AK296773 AK074672 AK128369	143996	+	AK295831 NM_001039395	148354	-	TSC_hg19_v1_chr9_+_4679596 AK000497 NM_017913 AK000646 AK225510 BC014133 CU680796	161346	+	NM_004170|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##BC033040|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##AB008536|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##U08989|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##AK313013|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##U06469|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##U03506|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##DQ892425|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##DQ895639|SLC1A1|6505|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1##AK075059|GLIS3|169792|GLIS family zinc finger 3##NM_001042413|GLIS3|169792|GLIS family zinc finger 3##DQ438877|GLIS3|169792|GLIS family zinc finger 3##DQ438881|GLIS3|169792|GLIS family zinc finger 3##DQ438886|GLIS3|169792|GLIS family zinc finger 3##DQ438891|GLIS3|169792|GLIS family zinc finger 3##DQ438898|GLIS3|169792|GLIS family zinc finger 3##DQ438901|GLIS3|169792|GLIS family zinc finger 3##BC038108|PPAPDC2|403313|phosphatidic acid phosphatase type 2 domain containing 2##NM_203453|PPAPDC2|403313|phosphatidic acid phosphatase type 2 domain containing 2##AK074672|PPAPDC2|403313|phosphatidic acid phosphatase type 2 domain containing 2##AK128369|PPAPDC2|403313|phosphatidic acid phosphatase type 2 domain containing 2##AK295831|C9orf68|55064|chromosome 9 open reading frame 68##NM_001039395|C9orf68|55064|chromosome 9 open reading frame 68##AK000497|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##NM_017913|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##AK000646|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##AK225510|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##BC014133|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1	2.37773	0.0	denovo_WM_7:-32:0.205	denovo_WM_7:56:0.324	denovo_WM_7:61:0.313	denovo_WM_7:62:0.309
chr8	135724834	135724946	reg1001156.p1	10.710	+	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	-16096	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	-1140793	-	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-1415393	-	TSC_hg19_v1_chr8_-_135725053 AB463359	189	-	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	384	-	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	744768	+	AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3	0.997319	0.0	denovo_WM_7:-15:0.841
chr1	224556290	224556409	reg1001386.p1	10.709	+	BC000573 TSC_hg19_v1_chr1_+_224544609 AK222634 BX649076 AM392966 AM393151 AM393502 DQ891901 DQ895087	-11738	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	-11757	+	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	-11780	+	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	65411	-	AB209887 NM_001115113 NM_025160	65651	-	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	247830	+	BC000573|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK222634|CNIH4|29097|cornichon homolog 4 (Drosophila)##BX649076|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM392966|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393151|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393502|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ891901|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ895087|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)	0.852684	0.0	denovo_WM_7:20:0.538	denovo_WM_7:22:0.233
chr7	100147907	100148053	reg1001489.p1	10.708	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	-11073	+	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	-11169	+	AK124773 NM_173564	-66431	+	NM_001168682	23289	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	35757	-	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	35795	-	AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4	1.110126	0.0	
chr7	102702479	102702581	reg1001453.p1	10.708	+	NM_001031692 NM_005824 TSC_hg19_v1_chr7_+_102553446 AK226021 AK225701 U32907 AK290305 BC027903 AY358889	-149098	+	TSC_hg19_v1_chr7_+_102389473 NM_001145268 NM_001145269 BC029175 AK297455 AK298753 AK054745 DQ893359 DQ896678	-313040	+	BC056864 BC071870 TSC_hg19_v1_chr7_-_102312111 BC044209 BC050598 BC110985 BC086857 NM_032959	-390410	-	AK097537 NM_145032	12484	-	AY359238 AY359239 AK095387 BC031285 BC026121 NM_001111038	12699	-	TSC_hg19_v1_chr7_+_102715335 AY150851 AY150852 AY150853 AY150854 NM_001161009 NM_001161010 NM_001161011 NM_001161012 NM_001161013 NM_031905	12786	+	NM_001031692|LRRC17|10234|leucine rich repeat containing 17##NM_005824|LRRC17|10234|leucine rich repeat containing 17##AK226021|LRRC17|10234|leucine rich repeat containing 17##AK225701|LRRC17|10234|leucine rich repeat containing 17##U32907|LRRC17|10234|leucine rich repeat containing 17##AK290305|LRRC17|10234|leucine rich repeat containing 17##BC027903|LRRC17|10234|leucine rich repeat containing 17##AY358889|LRRC17|10234|leucine rich repeat containing 17##NM_001145268|FAM185A|222234|family with sequence similarity 185, member A##NM_001145269|FAM185A|222234|family with sequence similarity 185, member A##BC029175|FAM185A|222234|family with sequence similarity 185, member A##AK297455|FAM185A|222234|family with sequence similarity 185, member A##AK298753|FAM185A|222234|family with sequence similarity 185, member A##AK054745|FAM185A|222234|family with sequence similarity 185, member A##DQ893359|FAM185A|222234|family with sequence similarity 185, member A##DQ896678|FAM185A|222234|family with sequence similarity 185, member A##BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC086857|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_032959|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AK097537|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_145032|FBXL13|222235|F-box and leucine-rich repeat protein 13##AY359238|FBXL13|222235|F-box and leucine-rich repeat protein 13##AY359239|FBXL13|222235|F-box and leucine-rich repeat protein 13##AK095387|FBXL13|222235|F-box and leucine-rich repeat protein 13##BC031285|FBXL13|222235|F-box and leucine-rich repeat protein 13##BC026121|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_001111038|FBXL13|222235|F-box and leucine-rich repeat protein 13##AY150851|ARMC10|83787|armadillo repeat containing 10##AY150852|ARMC10|83787|armadillo repeat containing 10##AY150853|ARMC10|83787|armadillo repeat containing 10##AY150854|ARMC10|83787|armadillo repeat containing 10##NM_001161009|ARMC10|83787|armadillo repeat containing 10##NM_001161010|ARMC10|83787|armadillo repeat containing 10##NM_001161011|ARMC10|83787|armadillo repeat containing 10##NM_001161012|ARMC10|83787|armadillo repeat containing 10##NM_001161013|ARMC10|83787|armadillo repeat containing 10##NM_031905|ARMC10|83787|armadillo repeat containing 10	0.98921	0.0	
chr8	17786012	17786178	reg1000328.p3	10.708	+	TSC_hg19_v1_chr8_+_17780529 BC065022 BC027477 BC140946	-5572	+	TSC_hg19_v1_chr8_+_17780501 BC000453	-5590	+	TSC_hg19_v1_chr8_+_17780498 AK307583 BC098391	-5600	+	TSC_hg19_v1_chr8_+_17822094 AF068293	36015	+	TSC_hg19_v1_chr8_+_17829865 AK091406 AX746961 AK302378	43874	+	AB528408 CU677637 DQ891071 DQ894254 U70063 TSC_hg19_v1_chr8_-_17941584 U47674	155481	-	BC065022|PCM1|5108|pericentriolar material 1##BC027477|PCM1|5108|pericentriolar material 1##BC140946|PCM1|5108|pericentriolar material 1##BC000453|PCM1|5108|pericentriolar material 1##AK307583|PCM1|5108|pericentriolar material 1##AF068293|PCM1|5108|pericentriolar material 1##AK091406|PCM1|5108|pericentriolar material 1##AK302378|PCM1|5108|pericentriolar material 1##DQ891071|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##DQ894254|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U70063|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U47674|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1	1.977886	0.0	denovo_WM_7:36:0.564	denovo_WM_7:37:0.416	denovo_WM_7:51:0.490	denovo_WM_7:52:0.496
chr7	55601092	55601243	reg1002250.p1	10.707	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	-167595	+	AK095857 NM_018697	-168027	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-514221	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	38873	-	TSC_hg19_v1_chr7_-_55640073 AB097004	38915	-	BC016650 AK314338 TSC_hg19_v1_chr7_-_55640107	38938	-	AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AB097004|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##BC016650|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK314338|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.972868	0.0	denovo_WM_7:-28:0.874
chr16	67548372	67548494	reg1002077.p1	10.706	+	NM_001138 U88063	-30718	-	CU679153 DQ893270 DQ896601 X71490 TSC_hg19_v1_chr16_-_67515051 AK300570 AK313035 AK125522 BC008861 NM_004691	-33389	-	TSC_hg19_v1_chr16_+_67465023 U26726 BC036780 BC064536 NM_000196 U14631	-83403	+	TSC_hg19_v1_chr16_+_67562734 NM_024519 AK127792 NM_001193522 AK307467 BC012730	14308	+	NM_001193523 AK293748	15151	+	TSC_hg19_v1_chr16_+_67571364 NM_001193524 BC021284 AK295677	22954	+	NM_001138|AGRP|181|agouti related protein homolog (mouse)##U88063|AGRP|181|agouti related protein homolog (mouse)##DQ893270|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##DQ896601|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##X71490|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK300570|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK313035|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK125522|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##BC008861|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##NM_004691|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##U26726|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC036780|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC064536|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_000196|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##U14631|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_024519|FAM65A|79567|family with sequence similarity 65, member A##AK127792|FAM65A|79567|family with sequence similarity 65, member A##NM_001193522|FAM65A|79567|family with sequence similarity 65, member A##AK307467|FAM65A|79567|family with sequence similarity 65, member A##NM_001193523|FAM65A|79567|family with sequence similarity 65, member A##AK293748|FAM65A|79567|family with sequence similarity 65, member A##NM_001193524|FAM65A|79567|family with sequence similarity 65, member A##AK295677|FAM65A|79567|family with sequence similarity 65, member A	0.0	0.118664	
chr17	30399148	30399320	reg1001657.p1	10.700	+	AY386261 AK302740 BC117373 BC143578 BC143581 AK310287 NM_052888 HQ258530 AJ314647	-51141	+	AB385289 TSC_hg19_v1_chr17_+_30264319	-134940	+	TSC_hg19_v1_chr17_+_30264164 BC015704	-135071	+	TSC_hg19_v1_chr17_+_30469463 BC060781 NM_001033566 NM_001033568 NM_018307 AJ496730	70194	+	TSC_hg19_v1_chr17_+_30469520 BC041114	70288	+	TSC_hg19_v1_chr17_+_30469544 BC110895	70311	+	AY386261|LRRC37B|114659|leucine rich repeat containing 37B##AK302740|LRRC37B|114659|leucine rich repeat containing 37B##BC117373|LRRC37B|114659|leucine rich repeat containing 37B##BC143578|LRRC37B|114659|leucine rich repeat containing 37B##BC143581|LRRC37B|114659|leucine rich repeat containing 37B##AK310287|LRRC37B|114659|leucine rich repeat containing 37B##NM_052888|LRRC37B|114659|leucine rich repeat containing 37B##HQ258530|LRRC37B|114659|leucine rich repeat containing 37B##AJ314647|LRRC37B|114659|leucine rich repeat containing 37B##BC015704|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC060781|RHOT1|55288|ras homolog gene family, member T1##NM_001033566|RHOT1|55288|ras homolog gene family, member T1##NM_001033568|RHOT1|55288|ras homolog gene family, member T1##NM_018307|RHOT1|55288|ras homolog gene family, member T1##AJ496730|RHOT1|55288|ras homolog gene family, member T1##BC041114|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1	0.986263	0.0	denovo_WM_7:34:0.807
chr6	88829636	88829730	reg1001659.p1	10.699	+	BC029488 NM_030960 AF203447	-72153	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-417695	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-417735	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	25353	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	46083	-	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	843508	-	BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.805315	0.0	denovo_WM_7:14:0.445	denovo_WM_7:15:0.339
chr19	42595074	42595254	reg1001503.p1	10.693	+	TSC_hg19_v1_chr19_+_42580336 AF447880 AK027895 BC001184	-14798	+	TSC_hg19_v1_chr19_+_42580286 NM_022752	-14882	+	S40369 AJ249209 BC131717 NM_002088	-25226	-	M36718 X13809 BT007438 AB590941 TSC_hg19_v1_chr19_-_42636564 BC006101 M36653 NM_001207025 NM_001207026 NM_001247994 NM_002698 X53468	41427	-	TSC_hg19_v1_chr19_-_42721830 BC027930 NM_133328 AY125488 BC013372 AK307895 AK130203 AK075328	126675	-	TSC_hg19_v1_chr19_+_42724463 AK298895 AB075831 NM_133444	129300	+	AF447880|ZNF574|64763|zinc finger protein 574##AK027895|ZNF574|64763|zinc finger protein 574##BC001184|ZNF574|64763|zinc finger protein 574##NM_022752|ZNF574|64763|zinc finger protein 574##S40369|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##AJ249209|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC131717|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##NM_002088|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##M36718|POU2F2|5452|POU class 2 homeobox 2##X13809|POU2F2|5452|POU class 2 homeobox 2##BT007438|POU2F2|5452|POU class 2 homeobox 2##BC006101|POU2F2|5452|POU class 2 homeobox 2##M36653|POU2F2|5452|POU class 2 homeobox 2##NM_001207025|POU2F2|5452|POU class 2 homeobox 2##NM_001207026|POU2F2|5452|POU class 2 homeobox 2##NM_001247994|POU2F2|5452|POU class 2 homeobox 2##NM_002698|POU2F2|5452|POU class 2 homeobox 2##X53468|POU2F2|5452|POU class 2 homeobox 2##BC027930|DEDD2|162989|death effector domain containing 2##NM_133328|DEDD2|162989|death effector domain containing 2##AY125488|DEDD2|162989|death effector domain containing 2##BC013372|DEDD2|162989|death effector domain containing 2##AK307895|DEDD2|162989|death effector domain containing 2##AK130203|DEDD2|162989|death effector domain containing 2##AK075328|DEDD2|162989|death effector domain containing 2##AK298895|ZNF526|116115|zinc finger protein 526##AB075831|ZNF526|116115|zinc finger protein 526##NM_133444|ZNF526|116115|zinc finger protein 526	2.864317	0.0	denovo_WM_7:-2:0.221	denovo_WM_7:-12:0.232	denovo_WM_7:-13:0.226	denovo_WM_7:-34:0.818	denovo_WM_7:90:0.313	denovo_WM_7:91:0.313	denovo_WM_7:92:0.313
chr15	41583363	41583510	reg1000770.p1	10.691	+	TSC_hg19_v1_chr15_+_41576202 BC037835 BX647764 AK172729 AY007106	-7246	+	TSC_hg19_v1_chr15_+_41523465 AK307060 AK312582 BC051815 BC031293 CR536539 CR542085	-59914	+	TSC_hg19_v1_chr15_+_41523431 AK299660 NM_007236	-60018	+	TSC_hg19_v1_chr15_-_41624771 AF025441 BC015050 NM_007280	41353	-	NM_001243142 NM_001243143 NM_001243144 NM_016359 NM_018454	41455	+	AK307728 AK222819 AK290879 AK293168 BC011008 AF217513 TSC_hg19_v1_chr15_+_41625080 AK225703 AL833611 AK023483 BC024772 AF090915 AF290612 BC001308 BC012887	41645	+	BC037835|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##BX647764|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK172729|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AY007106|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK307060|CHP|11261|calcium binding protein P22##AK312582|CHP|11261|calcium binding protein P22##BC031293|CHP|11261|calcium binding protein P22##CR536539|CHP|11261|calcium binding protein P22##CR542085|CHP|11261|calcium binding protein P22##AK299660|CHP|11261|calcium binding protein P22##NM_007236|CHP|11261|calcium binding protein P22##AF025441|OIP5|11339|Opa interacting protein 5##BC015050|OIP5|11339|Opa interacting protein 5##NM_007280|OIP5|11339|Opa interacting protein 5##NM_001243142|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243143|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243144|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_016359|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_018454|NUSAP1|51203|nucleolar and spindle associated protein 1##AK307728|NUSAP1|51203|nucleolar and spindle associated protein 1##AK222819|NUSAP1|51203|nucleolar and spindle associated protein 1##AK290879|NUSAP1|51203|nucleolar and spindle associated protein 1##AK293168|NUSAP1|51203|nucleolar and spindle associated protein 1##BC011008|NUSAP1|51203|nucleolar and spindle associated protein 1##AF217513|NUSAP1|51203|nucleolar and spindle associated protein 1##AK225703|NUSAP1|51203|nucleolar and spindle associated protein 1##AL833611|NUSAP1|51203|nucleolar and spindle associated protein 1##AK023483|NUSAP1|51203|nucleolar and spindle associated protein 1##BC024772|NUSAP1|51203|nucleolar and spindle associated protein 1##AF090915|NUSAP1|51203|nucleolar and spindle associated protein 1##AF290612|NUSAP1|51203|nucleolar and spindle associated protein 1##BC001308|NUSAP1|51203|nucleolar and spindle associated protein 1##BC012887|NUSAP1|51203|nucleolar and spindle associated protein 1	0.807962	0.0	denovo_WM_7:-43:0.794
chr8	124706136	124706275	reg1001697.p1	10.690	+	AB196636 BC127886 NM_001081675	-41028	-	TSC_hg19_v1_chr8_-_124553499 NM_001242463 NM_058229	-152724	-	AY059629 AJ420108 TSC_hg19_v1_chr8_-_124553447 AK056986 EF143260	-152855	-	CR541838 BC125158 AJ306450 Z11502 NM_001003954 NM_004306 AK290281 AK223374	43414	-	TSC_hg19_v1_chr8_+_124780681 AK300603 BC030520	74485	+	TSC_hg19_v1_chr8_+_124780758 DQ228141 NM_144963 BC144630	74608	+	AB196636|KLHL38|340359|kelch-like 38 (Drosophila)##BC127886|KLHL38|340359|kelch-like 38 (Drosophila)##NM_001081675|KLHL38|340359|kelch-like 38 (Drosophila)##NM_001242463|FBXO32|114907|F-box protein 32##NM_058229|FBXO32|114907|F-box protein 32##AY059629|FBXO32|114907|F-box protein 32##AJ420108|FBXO32|114907|F-box protein 32##AK056986|FBXO32|114907|F-box protein 32##EF143260|FBXO32|114907|F-box protein 32##CR541838|ANXA13|312|annexin A13##BC125158|ANXA13|312|annexin A13##AJ306450|ANXA13|312|annexin A13##Z11502|ANXA13|312|annexin A13##NM_001003954|ANXA13|312|annexin A13##NM_004306|ANXA13|312|annexin A13##AK290281|ANXA13|312|annexin A13##AK223374|ANXA13|312|annexin A13##AK300603|FAM91A1|157769|family with sequence similarity 91, member A1##BC030520|FAM91A1|157769|family with sequence similarity 91, member A1##DQ228141|FAM91A1|157769|family with sequence similarity 91, member A1##NM_144963|FAM91A1|157769|family with sequence similarity 91, member A1##BC144630|FAM91A1|157769|family with sequence similarity 91, member A1	0.998059	0.658509	CTCF.p2:-27:0.659	denovo_WM_7:32:0.695	denovo_WM_7:34:0.217
chr1	207084547	207084666	reg1001425.p1	10.689	+	NM_001185156 NM_001185157 NM_001185158 NM_006850 AY641440 AY641441 U16261 BC009681	-13806	+	AF224266 NM_018724 BC117386 BC117390 BC074948 BC074949 AB590628 AY876922 BC069311 BC069364 BC069398 BC069425 BC069449 BC069487 BC069523 BC069559 CU686884 HQ258739	-45431	+	AF453946 NM_013371	-82385	+	BT006797 CU675387 DQ890699 HM480394 AF057557 NM_001193338 GQ160900 GQ160901 TSC_hg19_v1_chr1_-_207095293 AK292007 AK297053 AK301187 AK316336 BC006401 NM_001142473 NM_005449	10681	-	BC110494 BC110495 CR749533 TSC_hg19_v1_chr1_-_207119812 AK309273 S62403 AF272149 X73079 AK225471 NM_002644	35155	-	AK298394 NM_001122979 NM_001170631 NM_032029	59350	-	NM_001185156|IL24|11009|interleukin 24##NM_001185157|IL24|11009|interleukin 24##NM_001185158|IL24|11009|interleukin 24##NM_006850|IL24|11009|interleukin 24##AY641440|IL24|11009|interleukin 24##AY641441|IL24|11009|interleukin 24##U16261|IL24|11009|interleukin 24##BC009681|IL24|11009|interleukin 24##AF224266|IL20|50604|interleukin 20##NM_018724|IL20|50604|interleukin 20##BC117386|IL20|50604|interleukin 20##BC117390|IL20|50604|interleukin 20##BC074948|IL20|50604|interleukin 20##BC074949|IL20|50604|interleukin 20##AY876922|IL20|50604|interleukin 20##BC069311|IL20|50604|interleukin 20##BC069364|IL20|50604|interleukin 20##BC069398|IL20|50604|interleukin 20##BC069425|IL20|50604|interleukin 20##BC069449|IL20|50604|interleukin 20##BC069487|IL20|50604|interleukin 20##BC069523|IL20|50604|interleukin 20##BC069559|IL20|50604|interleukin 20##HQ258739|IL20|50604|interleukin 20##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19##BT006797|FAIM3|9214|Fas apoptotic inhibitory molecule 3##DQ890699|FAIM3|9214|Fas apoptotic inhibitory molecule 3##HM480394|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AF057557|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001193338|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160900|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160901|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK292007|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK297053|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK301187|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK316336|FAIM3|9214|Fas apoptotic inhibitory molecule 3##BC006401|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001142473|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_005449|FAIM3|9214|Fas apoptotic inhibitory molecule 3##BC110494|PIGR|5284|polymeric immunoglobulin receptor##BC110495|PIGR|5284|polymeric immunoglobulin receptor##CR749533|PIGR|5284|polymeric immunoglobulin receptor##S62403|PIGR|5284|polymeric immunoglobulin receptor##AF272149|PIGR|5284|polymeric immunoglobulin receptor##X73079|PIGR|5284|polymeric immunoglobulin receptor##AK225471|PIGR|5284|polymeric immunoglobulin receptor##NM_002644|PIGR|5284|polymeric immunoglobulin receptor##AK298394|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001122979|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001170631|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_032029|FCAMR|83953|Fc receptor, IgA, IgM, high affinity	0.264123	0.922995	CTCF.p2:13:0.923	denovo_WM_7:-17:0.205
chr21	43481641	43481774	reg1001730.p1	10.687	+	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	-51236	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	-107624	-	BC062323 AL833323 NM_199050	-134918	-	AB051810 AB051811 NM_001199527 NM_001199528	1360	+	AB096965 AY771619 AY771620 NM_001004416 NM_173568	9718	+	AF323660 NM_207627 AF323661 NM_207628	138152	+	AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1##AB096965|UMODL1|89766|uromodulin-like 1##AY771619|UMODL1|89766|uromodulin-like 1##AY771620|UMODL1|89766|uromodulin-like 1##NM_001004416|UMODL1|89766|uromodulin-like 1##NM_173568|UMODL1|89766|uromodulin-like 1##AF323660|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207627|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323661|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207628|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1	0.0	0.0	
chr2	25450987	25451163	reg1001317.p1	10.687	+	NM_000939 NM_001035256	-59517	-	TSC_hg19_v1_chr2_+_25264954 NM_014971 AB023170	-186098	+	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	-256208	-	TSC_hg19_v1_chr2_-_25466801 BC018214	15733	-	TSC_hg19_v1_chr2_-_25467080 BC023612	16060	-	TSC_hg19_v1_chr2_-_25468920 AK025230	17903	-	NM_000939|POMC|5443|proopiomelanocortin##NM_001035256|POMC|5443|proopiomelanocortin##NM_014971|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AB023170|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC018214|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	3.445259	0.0	denovo_WM_7:2:0.282	denovo_WM_7:3:0.219	denovo_WM_7:38:0.228	denovo_WM_7:39:0.291
chr3	183270478	183270620	reg1001620.p2	10.687	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-105119	+	NM_015078 BC064632 AK124500 AK310962	-124610	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-298943	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	2903	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	82851	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	145073	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	1.964557	0.0	denovo_WM_7:-20:0.983	denovo_WM_7:-35:0.982
chr17	43392300	43392480	reg1001819.p2	10.685	+	BC028124 AF433663 AK302184 AK058143 NM_152343	-52935	-	TSC_hg19_v1_chr17_+_43325300 AK311429	-67086	+	AK096807 TSC_hg19_v1_chr17_-_43319268	-73194	-	TSC_hg19_v1_chr17_-_43394387 BC035576 BC022296 AK290203 AK313085 NM_003954	1985	-	TSC_hg19_v1_chr17_-_43487753 AK092891 AX747793 AK300880	95360	-	TSC_hg19_v1_chr17_-_43503000 AK125535 NM_199282	110611	-	BC028124|C17orf46|124783|chromosome 17 open reading frame 46##AF433663|C17orf46|124783|chromosome 17 open reading frame 46##AK302184|C17orf46|124783|chromosome 17 open reading frame 46##AK058143|C17orf46|124783|chromosome 17 open reading frame 46##NM_152343|C17orf46|124783|chromosome 17 open reading frame 46##AK311429|LOC100133991|100133991|uncharacterized LOC100133991##BC035576|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC022296|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK290203|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK313085|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##NM_003954|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK092891|ARHGAP27|201176|Rho GTPase activating protein 27##AK300880|ARHGAP27|201176|Rho GTPase activating protein 27##AK125535|ARHGAP27|201176|Rho GTPase activating protein 27##NM_199282|ARHGAP27|201176|Rho GTPase activating protein 27	0.998732	0.0	denovo_WM_7:0:0.494	denovo_WM_7:0:0.494
chr8	39818701	39818881	reg1001731.p1	10.685	+	AK128691 NM_194294	-26318	+	NM_002164 AK313259 BC027882 X17668 AY221100 CU693308 JF772862	-47407	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	-123051	-	BC021672 NM_020130 BC020623 TSC_hg19_v1_chr8_+_40011000 AF268037 AK026240 EU832636 EU832712	192227	+	BC019598 TSC_hg19_v1_chr8_-_40755346 AK023904 NM_001135731 NM_024645	936546	-	TSC_hg19_v1_chr8_-_41166991 BC004466 AF017987 AF001900 AF056087 AK293090 BC036503 NM_003012	1348239	-	AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_002164|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK313259|IDO1|3620|indoleamine 2,3-dioxygenase 1##BC027882|IDO1|3620|indoleamine 2,3-dioxygenase 1##X17668|IDO1|3620|indoleamine 2,3-dioxygenase 1##AY221100|IDO1|3620|indoleamine 2,3-dioxygenase 1##JF772862|IDO1|3620|indoleamine 2,3-dioxygenase 1##X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2##BC021672|C8orf4|56892|chromosome 8 open reading frame 4##NM_020130|C8orf4|56892|chromosome 8 open reading frame 4##BC020623|C8orf4|56892|chromosome 8 open reading frame 4##AF268037|C8orf4|56892|chromosome 8 open reading frame 4##AK026240|C8orf4|56892|chromosome 8 open reading frame 4##EU832636|C8orf4|56892|chromosome 8 open reading frame 4##EU832712|C8orf4|56892|chromosome 8 open reading frame 4##BC019598|ZMAT4|79698|zinc finger, matrin-type 4##AK023904|ZMAT4|79698|zinc finger, matrin-type 4##NM_001135731|ZMAT4|79698|zinc finger, matrin-type 4##NM_024645|ZMAT4|79698|zinc finger, matrin-type 4##BC004466|SFRP1|6422|secreted frizzled-related protein 1##AF017987|SFRP1|6422|secreted frizzled-related protein 1##AF001900|SFRP1|6422|secreted frizzled-related protein 1##AF056087|SFRP1|6422|secreted frizzled-related protein 1##AK293090|SFRP1|6422|secreted frizzled-related protein 1##BC036503|SFRP1|6422|secreted frizzled-related protein 1##NM_003012|SFRP1|6422|secreted frizzled-related protein 1	0.992107	0.0	
chr10	64576601	64576724	reg1001497.p1	10.683	+	TSC_hg19_v1_chr10_-_64576127 NM_000399 NM_001136177 NM_001136179	-515	-	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	-565	-	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	-12005	+	AK312813 NM_001136178	2264	-	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	316369	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	316484	+	NM_000399|EGR2|1959|early growth response 2##NM_001136177|EGR2|1959|early growth response 2##NM_001136179|EGR2|1959|early growth response 2##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2	0.013089	0.0	
chr11	86747213	86747352	reg1001408.p1	10.683	+	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	-80894	-	TSC_hg19_v1_chr11_-_86666094 AY462097	-81175	-	NM_007173 TSC_hg19_v1_chr11_+_86511583 AK316508 AK075362 AK315562 AK304301 AK304054 BC063022 AL136914 BC001278 AF015287 AF193611 AY359033	-235730	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	1696	+	AK024853 TSC_hg19_v1_chr11_+_87032449	285160	+	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	1161310	-	BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##AY462097|FZD4|8322|frizzled family receptor 4##NM_007173|PRSS23|11098|protease, serine, 23##AK075362|PRSS23|11098|protease, serine, 23##AK315562|PRSS23|11098|protease, serine, 23##AK304301|PRSS23|11098|protease, serine, 23##AK304054|PRSS23|11098|protease, serine, 23##AL136914|PRSS23|11098|protease, serine, 23##BC001278|PRSS23|11098|protease, serine, 23##AF015287|PRSS23|11098|protease, serine, 23##AF193611|PRSS23|11098|protease, serine, 23##AY359033|PRSS23|11098|protease, serine, 23##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##AK024853|TMEM135|65084|transmembrane protein 135##BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family	0.99776	0.0	
chr16	79804434	79804578	reg1001040.p2	10.681	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-169891	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-1671051	+	NM_001244755	-1741521	+	AF125108 NM_130897 BC054892 BC035232	770382	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1033541	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	1235578	+	AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N	0.99074	0.0	denovo_WM_7:-12:0.228	denovo_WM_7:-13:0.228	denovo_WM_7:-14:0.228	denovo_WM_7:-15:0.228
chr16	436676	436829	reg1001524.p2	10.680	+	DQ892035 DQ895226 BC021557 AB045292 TSC_hg19_v1_chr16_-_431979 NM_021259 AK091823	-4831	-	BX647501 BC013829 TSC_hg19_v1_chr16_-_420539 AK226042 AK096844 BC000507 AK315180 NM_006428	-16214	-	TSC_hg19_v1_chr16_-_402657 NM_003502 NM_181050	-34106	-	TSC_hg19_v1_chr16_+_447198 BC017067 NM_005009 BC004880 Y07604 AB528678 BT019438	10459	+	TSC_hg19_v1_chr16_+_451884 AK055839 NM_020664 BC010740 AK128012 AK225961 BC030226	15132	+	TSC_hg19_v1_chr16_+_451944 AJ293009 CU679809	15195	+	DQ892035|TMEM8A|58986|transmembrane protein 8A##DQ895226|TMEM8A|58986|transmembrane protein 8A##BC021557|TMEM8A|58986|transmembrane protein 8A##AB045292|TMEM8A|58986|transmembrane protein 8A##NM_021259|TMEM8A|58986|transmembrane protein 8A##AK091823|TMEM8A|58986|transmembrane protein 8A##BX647501|MRPL28|10573|mitochondrial ribosomal protein L28##BC013829|MRPL28|10573|mitochondrial ribosomal protein L28##AK226042|MRPL28|10573|mitochondrial ribosomal protein L28##AK096844|MRPL28|10573|mitochondrial ribosomal protein L28##BC000507|MRPL28|10573|mitochondrial ribosomal protein L28##AK315180|MRPL28|10573|mitochondrial ribosomal protein L28##NM_006428|MRPL28|10573|mitochondrial ribosomal protein L28##NM_003502|AXIN1|8312|axin 1##NM_181050|AXIN1|8312|axin 1##BC017067|NME4|4833|non-metastatic cells 4, protein expressed in##NM_005009|NME4|4833|non-metastatic cells 4, protein expressed in##BC004880|NME4|4833|non-metastatic cells 4, protein expressed in##Y07604|NME4|4833|non-metastatic cells 4, protein expressed in##BT019438|NME4|4833|non-metastatic cells 4, protein expressed in##AK055839|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##NM_020664|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC010740|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK128012|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK225961|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC030226|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AJ293009|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal	1.984912	0.698917	CTCF.p2:9:0.699	denovo_WM_7:-35:0.694
chr19	56146137	56146308	reg1001429.p1	10.679	+	TSC_hg19_v1_chr19_-_56135944 BC065822 NM_203374	-10260	-	AK074859 AK309967 TSC_hg19_v1_chr19_-_56135933	-10290	-	NM_001195605	-21264	+	TSC_hg19_v1_chr19_+_56146387 AK055093	170	+	TSC_hg19_v1_chr19_+_56152397 AL359054 NM_207115 AK314888	6175	+	NM_016202 NM_001163423	7217	+	BC065822|ZNF784|147808|zinc finger protein 784##NM_203374|ZNF784|147808|zinc finger protein 784##AK074859|ZNF784|147808|zinc finger protein 784##NM_001195605|ZNF865|100507290|zinc finger protein 865##AL359054|ZNF580|51157|zinc finger protein 580##NM_207115|ZNF580|51157|zinc finger protein 580##AK314888|ZNF580|51157|zinc finger protein 580##NM_016202|ZNF580|51157|zinc finger protein 580##NM_001163423|ZNF580|51157|zinc finger protein 580	1.828609	0.0	denovo_WM_7:-74:0.238	denovo_WM_7:-75:0.238	denovo_WM_7:-76:0.238	denovo_WM_7:-77:0.238	denovo_WM_7:-96:0.592
chr2	55204470	55204616	reg1002153.p1	10.677	+	TSC_hg19_v1_chr2_-_55199899 BC131571	-4635	-	NM_001039753	-252395	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-418978	+	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	32829	-	AK302741 AF333336 NM_207521 AY123248	71767	-	TSC_hg19_v1_chr2_-_55277421 AF320999 AJ251383 AJ251384 CU687182 AM393104 AM393557 BC010737	72888	-	NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4##AK302741|RTN4|57142|reticulon 4##AF333336|RTN4|57142|reticulon 4##NM_207521|RTN4|57142|reticulon 4##AY123248|RTN4|57142|reticulon 4##AF320999|RTN4|57142|reticulon 4##AJ251383|RTN4|57142|reticulon 4##AJ251384|RTN4|57142|reticulon 4##AM393104|RTN4|57142|reticulon 4##AM393557|RTN4|57142|reticulon 4##BC010737|RTN4|57142|reticulon 4	0.986985	0.0	denovo_WM_7:8:0.760
chr7	100451158	100451336	reg1001707.p2	10.677	+	AF284422 TSC_hg19_v1_chr7_+_100450374 AK128873 AB033284	-854	+	NM_020246 BC000154 TSC_hg19_v1_chr7_+_100450361	-883	+	TSC_hg19_v1_chr7_+_100450340 AK301411	-907	+	NM_003302 AF000974 CR749505 TSC_hg19_v1_chr7_+_100465027 AK309312 AK056773 AK291906 BC028985 BC004249 BC021540 BC002680 BC004999 AJ001902 AB529171 DQ892893 DQ896140 CU678636 AB628085 AB628086 AB628087 AB628088	13787	+	TSC_hg19_v1_chr7_+_100472697 AK302820 NM_001128852 NM_001128853 NM_001128854 NM_015908	21449	+	TSC_hg19_v1_chr7_+_100472725 AK311728	21477	+	AF284422|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##AK128873|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##AB033284|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##NM_020246|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##BC000154|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##AK301411|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##NM_003302|TRIP6|7205|thyroid hormone receptor interactor 6##AF000974|TRIP6|7205|thyroid hormone receptor interactor 6##CR749505|TRIP6|7205|thyroid hormone receptor interactor 6##AK309312|TRIP6|7205|thyroid hormone receptor interactor 6##AK056773|TRIP6|7205|thyroid hormone receptor interactor 6##AK291906|TRIP6|7205|thyroid hormone receptor interactor 6##BC028985|TRIP6|7205|thyroid hormone receptor interactor 6##BC004249|TRIP6|7205|thyroid hormone receptor interactor 6##BC021540|TRIP6|7205|thyroid hormone receptor interactor 6##BC002680|TRIP6|7205|thyroid hormone receptor interactor 6##BC004999|TRIP6|7205|thyroid hormone receptor interactor 6##AJ001902|TRIP6|7205|thyroid hormone receptor interactor 6##DQ892893|TRIP6|7205|thyroid hormone receptor interactor 6##DQ896140|TRIP6|7205|thyroid hormone receptor interactor 6##AB628085|TRIP6|7205|thyroid hormone receptor interactor 6##AB628086|TRIP6|7205|thyroid hormone receptor interactor 6##AB628087|TRIP6|7205|thyroid hormone receptor interactor 6##AB628088|TRIP6|7205|thyroid hormone receptor interactor 6##AK302820|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001128852|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001128853|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001128854|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_015908|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##AK311728|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)	0.993188	0.0	denovo_WM_7:-55:0.431	denovo_WM_7:-56:0.502
chr7	45796526	45796648	reg1001285.p1	10.677	+	AB209496 TSC_hg19_v1_chr7_+_45614187	-182388	+	TSC_hg19_v1_chr7_+_45614105 AF497515 NM_021116	-182485	+	NM_005856 TSC_hg19_v1_chr7_+_45197392 AJ001016 BC022304 BC053852 AK222469 DQ891371 CU691036 AK311871 AY265459	-599191	+	TSC_hg19_v1_chr7_-_45808577 AL832059 BC092503	12003	-	NM_000596 TSC_hg19_v1_chr7_+_45928086 AK314925 BC057806 M31145 BC035263 X12385 M20841 X13405 Y00856 BT019685 FJ795026	131518	+	AF042356 TSC_hg19_v1_chr7_+_45933167	136547	+	AB209496|ADCY1|107|adenylate cyclase 1 (brain)##AF497515|ADCY1|107|adenylate cyclase 1 (brain)##NM_021116|ADCY1|107|adenylate cyclase 1 (brain)##NM_005856|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AJ001016|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##BC022304|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##BC053852|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AK222469|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##DQ891371|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AK311871|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AY265459|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AL832059|SEPT7P2|641977|septin 7 pseudogene 2##BC092503|SEPT7P2|641977|septin 7 pseudogene 2##NM_000596|IGFBP1|3484|insulin-like growth factor binding protein 1##AK314925|IGFBP1|3484|insulin-like growth factor binding protein 1##BC057806|IGFBP1|3484|insulin-like growth factor binding protein 1##M31145|IGFBP1|3484|insulin-like growth factor binding protein 1##BC035263|IGFBP1|3484|insulin-like growth factor binding protein 1##X12385|IGFBP1|3484|insulin-like growth factor binding protein 1##M20841|IGFBP1|3484|insulin-like growth factor binding protein 1##X13405|IGFBP1|3484|insulin-like growth factor binding protein 1##Y00856|IGFBP1|3484|insulin-like growth factor binding protein 1##BT019685|IGFBP1|3484|insulin-like growth factor binding protein 1##FJ795026|IGFBP1|3484|insulin-like growth factor binding protein 1	0.983619	0.046519	denovo_WM_7:24:0.323	denovo_WM_7:25:0.323	denovo_WM_7:26:0.323
chr19	39355329	39355509	reg1001237.p2	10.675	+	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	-12443	-	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-14794	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-14843	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	13491	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	34882	+	TSC_hg19_v1_chr19_-_39390229 AK314492 AB009274 AF160214 AY030277 AF095714 AK025876 AK225824 AK054642 AK094810 BC003012 BC003547 AF083107 NM_012237 NM_001193286 NM_030593	34915	-	AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK314492|SIRT2|22933|sirtuin 2##AB009274|SIRT2|22933|sirtuin 2##AF160214|SIRT2|22933|sirtuin 2##AY030277|SIRT2|22933|sirtuin 2##AF095714|SIRT2|22933|sirtuin 2##AK025876|SIRT2|22933|sirtuin 2##AK225824|SIRT2|22933|sirtuin 2##AK054642|SIRT2|22933|sirtuin 2##AK094810|SIRT2|22933|sirtuin 2##BC003012|SIRT2|22933|sirtuin 2##BC003547|SIRT2|22933|sirtuin 2##AF083107|SIRT2|22933|sirtuin 2##NM_012237|SIRT2|22933|sirtuin 2##NM_001193286|SIRT2|22933|sirtuin 2##NM_030593|SIRT2|22933|sirtuin 2	0.995747	0.0	denovo_WM_7:-5:0.456	denovo_WM_7:-6:0.456
chr12	108935161	108935289	reg1001045.p1	10.673	+	TSC_hg19_v1_chr12_+_108909056 AK026074 NM_007076 AK000014 AY358992 BC001342 BC064629	-26143	+	U79526 U79527 AK291800 NM_001142343 NM_001142344 NM_004072	-202141	-	NM_001142345	-220787	-	AB385287 D63879 TSC_hg19_v1_chr12_-_108954936 BC103706 BC093784 BC111983 BC143253 BC004547 BC024279 AB020880 AF387506 BC032601	19709	-	TSC_hg19_v1_chr12_-_108954945 AK225174 AK304834	19721	-	TSC_hg19_v1_chr12_-_108954952 AK290209	19739	-	AK026074|FICD|11153|FIC domain containing##NM_007076|FICD|11153|FIC domain containing##AK000014|FICD|11153|FIC domain containing##AY358992|FICD|11153|FIC domain containing##BC001342|FICD|11153|FIC domain containing##BC064629|FICD|11153|FIC domain containing##U79526|CMKLR1|1240|chemokine-like receptor 1##U79527|CMKLR1|1240|chemokine-like receptor 1##AK291800|CMKLR1|1240|chemokine-like receptor 1##NM_001142343|CMKLR1|1240|chemokine-like receptor 1##NM_001142344|CMKLR1|1240|chemokine-like receptor 1##NM_004072|CMKLR1|1240|chemokine-like receptor 1##NM_001142345|CMKLR1|1240|chemokine-like receptor 1##D63879|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC103706|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC093784|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC111983|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC143253|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC004547|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC024279|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AB020880|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AF387506|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##BC032601|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AK225174|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AK304834|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3##AK290209|SART3|9733|squamous cell carcinoma antigen recognized by T cells 3	0.0	0.0	
chr1	36837197	36837320	reg1001652.p1	10.672	+	TSC_hg19_v1_chr1_-_36817157 AK023810	-20084	-	AK001509 NM_018166	-47504	-	TSC_hg19_v1_chr1_+_36772696 NM_024676 AK297015 AK056459	-64552	+	AL834137 NM_032017 BC008344 TSC_hg19_v1_chr1_-_36851499 BC007835 AY198395	14233	-	TSC_hg19_v1_chr1_-_36851517 AK075048	14265	-	AF394685 TSC_hg19_v1_chr1_-_36863508 AF166092 BC007623 NM_032881	26235	-	AK001509|FAM176B|55194|family with sequence similarity 176, member B##NM_018166|FAM176B|55194|family with sequence similarity 176, member B##NM_024676|SH3D21|79729|SH3 domain containing 21##AK297015|SH3D21|79729|SH3 domain containing 21##AK056459|SH3D21|79729|SH3 domain containing 21##AL834137|STK40|83931|serine/threonine kinase 40##NM_032017|STK40|83931|serine/threonine kinase 40##BC008344|STK40|83931|serine/threonine kinase 40##BC007835|STK40|83931|serine/threonine kinase 40##AY198395|STK40|83931|serine/threonine kinase 40##AK075048|STK40|83931|serine/threonine kinase 40##AF394685|LSM10|84967|LSM10, U7 small nuclear RNA associated##AF166092|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC007623|LSM10|84967|LSM10, U7 small nuclear RNA associated##NM_032881|LSM10|84967|LSM10, U7 small nuclear RNA associated	1.611349	0.0	denovo_WM_7:35:0.311	denovo_WM_7:50:0.260	denovo_WM_7:-91:0.208
chr15	66681843	66682008	reg1001996.p1	10.670	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	-2652	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	-2763	+	AK000523 TSC_hg19_v1_chr15_-_66649024 AK299233 BC000870 NM_017858	-32902	-	TSC_hg19_v1_chr15_+_66694219 AK294322	12292	+	AF093593 AB464224 AK292051 TSC_hg19_v1_chr15_-_66790104 BC014315 AK024763 AK312018 NM_006049	108181	-	L20868 BC005817 BC009888 BC014653 BC010151 BC007996 BC040610 AB208977 BC001365 BC018840 BC095427 TSC_hg19_v1_chr15_-_66797186 AK297490 AK291117 AK297484 AK130784 AK223057 AK291859 AK294113 AK298224 BC066925 D23660 NM_000968	115247	-	AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK000523|TIPIN|54962|TIMELESS interacting protein##AK299233|TIPIN|54962|TIMELESS interacting protein##BC000870|TIPIN|54962|TIMELESS interacting protein##NM_017858|TIPIN|54962|TIMELESS interacting protein##AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AF093593|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK292051|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##BC014315|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK024763|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK312018|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##NM_006049|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##L20868|RPL4|6124|ribosomal protein L4##BC005817|RPL4|6124|ribosomal protein L4##BC009888|RPL4|6124|ribosomal protein L4##BC014653|RPL4|6124|ribosomal protein L4##BC010151|RPL4|6124|ribosomal protein L4##BC007996|RPL4|6124|ribosomal protein L4##BC040610|RPL4|6124|ribosomal protein L4##AB208977|RPL4|6124|ribosomal protein L4##BC001365|RPL4|6124|ribosomal protein L4##BC018840|RPL4|6124|ribosomal protein L4##BC095427|RPL4|6124|ribosomal protein L4##AK291117|RPL4|6124|ribosomal protein L4##AK297484|RPL4|6124|ribosomal protein L4##AK130784|RPL4|6124|ribosomal protein L4##AK223057|RPL4|6124|ribosomal protein L4##AK291859|RPL4|6124|ribosomal protein L4##AK294113|RPL4|6124|ribosomal protein L4##BC066925|RPL4|6124|ribosomal protein L4##D23660|RPL4|6124|ribosomal protein L4##NM_000968|RPL4|6124|ribosomal protein L4	0.998431	0.0	
chr4	48038960	48039122	reg1001527.p1	10.670	+	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-20238	+	X64802 TSC_hg19_v1_chr4_-_48018662	-20404	-	AK292021 NM_000087	-24081	-	BC017829 L27071 NM_003328	97217	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	232794	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	304370	+	BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##AK292021|CNGA1|1259|cyclic nucleotide gated channel alpha 1##NM_000087|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2	0.026709	0.0	
chr4	129446565	129446722	reg1001481.p2	10.668	+	AK131272 NM_006320	-236660	-	TSC_hg19_v1_chr4_-_129208969 BC092478	-237652	-	AK091741 AX747155 TSC_hg19_v1_chr4_-_129208964 BC016692	-237679	-	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	284227	+	TSC_hg19_v1_chr4_+_129732427 BC032376	285810	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	567947	-	AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC092478|PGRMC2|10424|progesterone receptor membrane component 2##AK091741|PGRMC2|10424|progesterone receptor membrane component 2##BC016692|PGRMC2|10424|progesterone receptor membrane component 2##NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##BC032376|PHF17|79960|PHD finger protein 17##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1	0.997828	0.0	
chr8	127881729	127881849	reg1001688.p1	10.664	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-311065	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-311234	-	TSC_hg19_v1_chr8_-_126963395 BX648371	-918376	-	DQ486513 NM_001159542	546067	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	866536	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	866701	+	NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	1.023485	0.158764	denovo_WM_7:-23:0.239	denovo_WM_7:-24:0.239	denovo_WM_7:-25:0.239	denovo_WM_7:-26:0.239
chr10	76349013	76349172	reg1001724.p1	10.662	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-412505	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-412562	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-412610	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	237262	+	AY686755 NM_001003892 BC137321 BC137322	469213	-	AB027004 AB103375 NM_016364	510155	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.995951	0.0	denovo_WM_7:-65:0.435
chr3	171852305	171852444	reg1001713.p1	10.662	+	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-94037	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-94916	+	TSC_hg19_v1_chr3_+_171757437 AK127826	-94940	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	313849	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	388804	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	576516	-	AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1	0.13095	0.0	
chr6_ssto_hap7	4085008	4085133	reg1001224.p1	10.659	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.996503	0.0	
chr6	10534225	10534405	reg1000544.p2	10.658	+	AK307373 NM_145649 AK291767 AK310216 AL832714	-12707	+	AK296737 NM_001042425	-114524	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	-118847	-	NM_001491	21633	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	51699	+	BC016820 NM_001145020	160522	-	AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK296737|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001042425|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52	0.991648	0.0	denovo_WM_7:67:0.228	denovo_WM_7:68:0.228	denovo_WM_7:69:0.228	denovo_WM_7:70:0.228
chr15	41694678	41694816	reg1001280.p1	10.657	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	-85	-	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	-69582	+	AK307728 AK222819 AK290879 AK293168 BC011008 AF217513 TSC_hg19_v1_chr15_+_41625080 AK225703 AL833611 AK023483 BC024772 AF090915 AF290612 BC001308 BC012887	-69666	+	TSC_hg19_v1_chr15_+_41709329 NM_015138 AK292302 D87440 BC015052 AB383821	14613	+	NM_002220 TSC_hg19_v1_chr15_+_41786071 BC026331 X54938 AB463780	91343	+	BC143903 D16105 AK314006 BC045607 X60702 AK296892 NM_001135685 NM_002344 NM_206961	111291	-	AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##AK307728|NUSAP1|51203|nucleolar and spindle associated protein 1##AK222819|NUSAP1|51203|nucleolar and spindle associated protein 1##AK290879|NUSAP1|51203|nucleolar and spindle associated protein 1##AK293168|NUSAP1|51203|nucleolar and spindle associated protein 1##BC011008|NUSAP1|51203|nucleolar and spindle associated protein 1##AF217513|NUSAP1|51203|nucleolar and spindle associated protein 1##AK225703|NUSAP1|51203|nucleolar and spindle associated protein 1##AL833611|NUSAP1|51203|nucleolar and spindle associated protein 1##AK023483|NUSAP1|51203|nucleolar and spindle associated protein 1##BC024772|NUSAP1|51203|nucleolar and spindle associated protein 1##AF090915|NUSAP1|51203|nucleolar and spindle associated protein 1##AF290612|NUSAP1|51203|nucleolar and spindle associated protein 1##BC001308|NUSAP1|51203|nucleolar and spindle associated protein 1##BC012887|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_015138|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK292302|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##D87440|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC015052|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_002220|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC026331|ITPKA|3706|inositol-trisphosphate 3-kinase A##X54938|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC143903|LTK|4058|leukocyte receptor tyrosine kinase##D16105|LTK|4058|leukocyte receptor tyrosine kinase##AK314006|LTK|4058|leukocyte receptor tyrosine kinase##BC045607|LTK|4058|leukocyte receptor tyrosine kinase##X60702|LTK|4058|leukocyte receptor tyrosine kinase##AK296892|LTK|4058|leukocyte receptor tyrosine kinase##NM_001135685|LTK|4058|leukocyte receptor tyrosine kinase##NM_002344|LTK|4058|leukocyte receptor tyrosine kinase##NM_206961|LTK|4058|leukocyte receptor tyrosine kinase	0.0	0.0	
chr9	114360202	114360307	reg1001480.p1	10.656	+	AK092811 AX747743 AK291267 NM_001007169 NM_133464 TSC_hg19_v1_chr9_+_114287505 BC065738 BC020893 AB075842 BC152427 BC152433	-72779	+	NM_001080398	-113230	-	TSC_hg19_v1_chr9_-_114246233 AK122712	-113989	-	TSC_hg19_v1_chr9_-_114361678 BC035228 NM_012212	1436	-	D49387 AK091948 AK309450 TSC_hg19_v1_chr9_-_114361928	1663	-	AK309866 AK298379 AK289597 NM_001146108 NM_001146109	1863	-	AK092811|ZNF483|158399|zinc finger protein 483##AK291267|ZNF483|158399|zinc finger protein 483##NM_001007169|ZNF483|158399|zinc finger protein 483##NM_133464|ZNF483|158399|zinc finger protein 483##BC065738|ZNF483|158399|zinc finger protein 483##BC020893|ZNF483|158399|zinc finger protein 483##AB075842|ZNF483|158399|zinc finger protein 483##BC152427|ZNF483|158399|zinc finger protein 483##BC152433|ZNF483|158399|zinc finger protein 483##NM_001080398|KIAA0368|23392|KIAA0368##AK122712|KIAA0368|23392|KIAA0368##BC035228|PTGR1|22949|prostaglandin reductase 1##NM_012212|PTGR1|22949|prostaglandin reductase 1##D49387|PTGR1|22949|prostaglandin reductase 1##AK091948|PTGR1|22949|prostaglandin reductase 1##AK309450|PTGR1|22949|prostaglandin reductase 1##AK309866|PTGR1|22949|prostaglandin reductase 1##AK298379|PTGR1|22949|prostaglandin reductase 1##AK289597|PTGR1|22949|prostaglandin reductase 1##NM_001146108|PTGR1|22949|prostaglandin reductase 1##NM_001146109|PTGR1|22949|prostaglandin reductase 1	1.181479	0.649974	CTCF.p2:-14:0.650	denovo_WM_7:28:0.915
chr6	88541801	88541936	reg1001459.p1	10.654	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-129880	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-129920	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-129959	-	BC029488 NM_030960 AF203447	215662	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	313168	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	333898	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.452644	0.017259	denovo_WM_7:23:0.271
chr8	30013413	30013593	reg1001275.p1	10.654	+	NM_001100916 EU518495	-11303	-	TSC_hg19_v1_chr8_+_29952989 AK075363 AF161461 DQ891897 DQ895083 CR541735 CR541760	-60504	+	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	-60560	+	D84145 NM_006571 TSC_hg19_v1_chr8_+_30013882 AK314128 BC013175 CR456851	352	+	Z36874 TSC_hg19_v1_chr8_+_30209759	196234	+	NM_001008710 NM_001008711 NM_001008712 NM_006867 AK304858 D84107 D84108 D84109 D84110 TSC_hg19_v1_chr8_+_30242056 BC003608	228506	+	NM_001100916|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##EU518495|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##AK075363|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF161461|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ891897|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ895083|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541735|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541760|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##D84145|DCTN6|10671|dynactin 6##NM_006571|DCTN6|10671|dynactin 6##AK314128|DCTN6|10671|dynactin 6##BC013175|DCTN6|10671|dynactin 6##CR456851|DCTN6|10671|dynactin 6##NM_001008710|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008711|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008712|RBPMS|11030|RNA binding protein with multiple splicing##NM_006867|RBPMS|11030|RNA binding protein with multiple splicing##AK304858|RBPMS|11030|RNA binding protein with multiple splicing##D84107|RBPMS|11030|RNA binding protein with multiple splicing##D84108|RBPMS|11030|RNA binding protein with multiple splicing##D84109|RBPMS|11030|RNA binding protein with multiple splicing##D84110|RBPMS|11030|RNA binding protein with multiple splicing##BC003608|RBPMS|11030|RNA binding protein with multiple splicing	1.985097	0.0	denovo_WM_7:9:0.978	denovo_WM_7:24:0.977
chr5	43061943	43062074	reg1000857.p1	10.651	+	AB463523 BC067873 AY032883 NM_001014279	-21712	-	TSC_hg19_v1_chr5_-_42993436 AK056817	-68562	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-250017	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	58993	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	59606	+	AK057343 NM_003432 TSC_hg19_v1_chr5_+_43121669 AK310735 BC017923	59676	+	BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131##AK057343|ZNF131|7690|zinc finger protein 131##NM_003432|ZNF131|7690|zinc finger protein 131##AK310735|ZNF131|7690|zinc finger protein 131##BC017923|ZNF131|7690|zinc finger protein 131	0.998797	0.0	denovo_WM_7:42:0.307	denovo_WM_7:43:0.307	denovo_WM_7:44:0.307
chr3	45025919	45026081	reg1001837.p2	10.649	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	-8240	+	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	-8263	+	BC015467 TSC_hg19_v1_chr3_-_45017670 AF247703 NM_001135179 NM_016598	-8359	-	AK312093 NM_003278 X64559 TSC_hg19_v1_chr3_+_45067794 BC011024 CU679874 CR541981 CR542009	41802	+	AB527383 CU676820 TSC_hg19_v1_chr3_-_45187791	161786	-	TSC_hg19_v1_chr3_-_45187849 AY375452 AY026461	161851	-	BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##BC015467|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AF247703|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_001135179|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_016598|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AK312093|CLEC3B|7123|C-type lectin domain family 3, member B##NM_003278|CLEC3B|7123|C-type lectin domain family 3, member B##X64559|CLEC3B|7123|C-type lectin domain family 3, member B##BC011024|CLEC3B|7123|C-type lectin domain family 3, member B##CR541981|CLEC3B|7123|C-type lectin domain family 3, member B##CR542009|CLEC3B|7123|C-type lectin domain family 3, member B##AY375452|CDCP1|64866|CUB domain containing protein 1##AY026461|CDCP1|64866|CUB domain containing protein 1	0.991956	0.0	denovo_WM_7:-33:0.837
chr14	56037950	56038104	reg1001679.p1	10.646	+	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	-130730	-	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	-159471	-	NM_152231	-299156	+	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	8789	-	TSC_hg19_v1_chr14_+_56046963 NM_001079521 NM_001079522 NM_004986 NM_182926 BC066337 D13629 AK302797 BC050555 BC058736 Z22551 AY264265 BC112337	9075	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	40722	+	AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_152231|FBXO34|55030|F-box protein 34##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##NM_001079521|KTN1|3895|kinectin 1 (kinesin receptor)##NM_001079522|KTN1|3895|kinectin 1 (kinesin receptor)##NM_004986|KTN1|3895|kinectin 1 (kinesin receptor)##NM_182926|KTN1|3895|kinectin 1 (kinesin receptor)##BC066337|KTN1|3895|kinectin 1 (kinesin receptor)##D13629|KTN1|3895|kinectin 1 (kinesin receptor)##AK302797|KTN1|3895|kinectin 1 (kinesin receptor)##BC050555|KTN1|3895|kinectin 1 (kinesin receptor)##BC058736|KTN1|3895|kinectin 1 (kinesin receptor)##Z22551|KTN1|3895|kinectin 1 (kinesin receptor)##AY264265|KTN1|3895|kinectin 1 (kinesin receptor)##BC112337|KTN1|3895|kinectin 1 (kinesin receptor)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)	0.998646	0.0	denovo_WM_7:-17:0.775
chr8	116440057	116440207	reg1001499.p1	10.646	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-1991003	-	AB114605 NM_198124	-2050751	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-5453166	-	TSC_hg19_v1_chr8_-_116680208 AK304046	240088	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	241033	-	TSC_hg19_v1_chr8_-_116681365 AF183810	241203	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.999109	0.0	denovo_WM_7:1:0.902
chr7	105405731	105405850	reg1001325.p1	10.645	+	AK300338 NM_138495	-86182	-	TSC_hg19_v1_chr7_-_105221933 BC062748 BC105284	-183855	-	BC068483 NM_021930 AK055508 TSC_hg19_v1_chr7_+_105172647 AK308126 AF317622 HQ257980	-233144	+	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	111195	-	TSC_hg19_v1_chr7_+_105517250 AK125261	111474	+	NM_152750 AK126338 AK131293 AK304118 BC111696 BC111738 AK304352	197908	+	AK300338|ATXN7L1|222255|ataxin 7-like 1##NM_138495|ATXN7L1|222255|ataxin 7-like 1##BC105284|EFCAB10|100130771|EF-hand calcium binding domain 10##BC068483|RINT1|60561|RAD50 interactor 1##NM_021930|RINT1|60561|RAD50 interactor 1##AK055508|RINT1|60561|RAD50 interactor 1##AK308126|RINT1|60561|RAD50 interactor 1##AF317622|RINT1|60561|RAD50 interactor 1##HQ257980|RINT1|60561|RAD50 interactor 1##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##AK125261|CDHR3|222256|cadherin-related family member 3##NM_152750|CDHR3|222256|cadherin-related family member 3##AK126338|CDHR3|222256|cadherin-related family member 3##AK131293|CDHR3|222256|cadherin-related family member 3##AK304118|CDHR3|222256|cadherin-related family member 3##BC111696|CDHR3|222256|cadherin-related family member 3##BC111738|CDHR3|222256|cadherin-related family member 3##AK304352|CDHR3|222256|cadherin-related family member 3	0.996335	0.0	denovo_WM_7:-22:0.697
chr22	46872452	46872590	reg1002134.p1	10.643	+	TSC_hg19_v1_chr22_+_46731810 AK303020	-140711	+	TSC_hg19_v1_chr22_+_46731615 AB178028 AK001002 AK295173 AK290712 BC066593 BC080631 CR456445 BC027991 BC012076 AB463324 CU013043 CU013331	-140892	+	NM_018006 AY062123 DQ309998 DQ309999 DQ310000	-141212	+	AF231024 NM_014246 TSC_hg19_v1_chr22_-_46933142	60593	-	CR456470 NM_015124 BC129837 AB463563 CU013020 CU013308	150155	+	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	261558	-	AK303020|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AB178028|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK001002|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK295173|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK290712|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC066593|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC080631|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CR456445|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC027991|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC012076|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013043|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013331|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##NM_018006|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AY062123|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ309998|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ309999|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ310000|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AF231024|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##NM_014246|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##CR456470|GRAMD4|23151|GRAM domain containing 4##NM_015124|GRAMD4|23151|GRAM domain containing 4##BC129837|GRAMD4|23151|GRAM domain containing 4##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase	0.990736	0.0	denovo_WM_7:-17:0.237	denovo_WM_7:-18:0.237	denovo_WM_7:-19:0.237	denovo_WM_7:-20:0.237
chr7	17225477	17225616	reg1001592.p2	10.643	+	AY359065 BC058284 NM_176813	-303942	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-380875	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-432090	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	112723	+	TSC_hg19_v1_chr7_+_17382906 BC021696	157360	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	754503	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.0	0.0	
chr1	156097191	156097371	reg1001843.p2	10.642	+	TSC_hg19_v1_chr1_+_156084585 AY528714 AB527090 EU831758 EU831836 EU832167 EU832261 CU677029 CU678414 AY847595 AY847596 AY847597	-12637	+	TSC_hg19_v1_chr1_+_156084568 M13451	-12711	+	TSC_hg19_v1_chr1_+_156084553 BC003162 AK130179	-12730	+	NM_001193301 AY358531	22490	+	NM_001193300 NM_022367 AK296693 TSC_hg19_v1_chr1_+_156123375 AK091127 AK290353 AX746794 NM_001193302 AK315547 BX640891 BC020974	26073	+	TSC_hg19_v1_chr1_+_156163725 NM_014655	66457	+	AY528714|LMNA|4000|lamin A/C##EU831758|LMNA|4000|lamin A/C##EU831836|LMNA|4000|lamin A/C##EU832167|LMNA|4000|lamin A/C##EU832261|LMNA|4000|lamin A/C##AY847595|LMNA|4000|lamin A/C##AY847596|LMNA|4000|lamin A/C##AY847597|LMNA|4000|lamin A/C##M13451|LMNA|4000|lamin A/C##BC003162|LMNA|4000|lamin A/C##AK130179|LMNA|4000|lamin A/C##NM_001193301|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AY358531|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193300|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_022367|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK296693|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK091127|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK290353|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193302|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK315547|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BX640891|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BC020974|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_014655|SLC25A44|9673|solute carrier family 25, member 44	1.903538	0.0	denovo_WM_7:24:0.946	denovo_WM_7:39:0.947
chr1	220263492	220263672	reg1000450.p3	10.641	+	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	-408	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	-461	-	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-43646	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	3870	+	TSC_hg19_v1_chr1_+_220267495 AY952883 D28500 AK291432 BC040376	4024	+	AB020646 BC146760 TSC_hg19_v1_chr1_-_220445745 BC050630 AF004828 BC131573	182130	-	AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AY952883|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##D28500|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AK291432|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC040376|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AB020646|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC146760|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC050630|AURKAPS1|6791|aurora kinase A pseudogene 1##AF004828|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC131573|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)	1.996184	0.0	denovo_WM_7:54:0.545	denovo_WM_7:55:0.418	denovo_WM_7:69:0.484	denovo_WM_7:70:0.497
chr1	36939878	36940042	reg1001698.p1	10.638	+	TSC_hg19_v1_chr1_-_36929984 AB049946 AB209905 AK021626 BC031336 AF265439 AK315441 AK302633 NM_031280	-10001	-	AB079075 AK098541 BC018069 NM_145047 NM_206837	-23933	-	AF394685 TSC_hg19_v1_chr1_-_36863508 AF166092 BC007623 NM_032881	-76467	-	BC040954 TSC_hg19_v1_chr1_-_36948515 AK307242 X55720 X55721 M59818 M59819 M59820 BC053585	8524	-	NM_000760 NM_156039 NM_172313	8954	-	AJ299451 U16127 AJ249210 TSC_hg19_v1_chr1_-_37499794 NM_000831	559815	-	AB049946|MRPS15|64960|mitochondrial ribosomal protein S15##AB209905|MRPS15|64960|mitochondrial ribosomal protein S15##AK021626|MRPS15|64960|mitochondrial ribosomal protein S15##BC031336|MRPS15|64960|mitochondrial ribosomal protein S15##AF265439|MRPS15|64960|mitochondrial ribosomal protein S15##AK315441|MRPS15|64960|mitochondrial ribosomal protein S15##AK302633|MRPS15|64960|mitochondrial ribosomal protein S15##NM_031280|MRPS15|64960|mitochondrial ribosomal protein S15##AB079075|OSCP1|127700|organic solute carrier partner 1##AK098541|OSCP1|127700|organic solute carrier partner 1##BC018069|OSCP1|127700|organic solute carrier partner 1##NM_145047|OSCP1|127700|organic solute carrier partner 1##NM_206837|OSCP1|127700|organic solute carrier partner 1##AF394685|LSM10|84967|LSM10, U7 small nuclear RNA associated##AF166092|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC007623|LSM10|84967|LSM10, U7 small nuclear RNA associated##NM_032881|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC040954|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##AK307242|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55720|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55721|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59818|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59819|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59820|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##BC053585|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_000760|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_156039|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_172313|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##AJ299451|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##U16127|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##AJ249210|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##NM_000831|GRIK3|2899|glutamate receptor, ionotropic, kainate 3	0.999632	0.0	
chr4	163813734	163813886	reg1001769.p1	10.636	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	-728659	-	AK294459 NM_014247	-3624813	+	AK058100 NM_152543	-3857478	-	TSC_hg19_v1_chr4_-_164088002 AK097352	274182	-	TSC_hg19_v1_chr4_-_164088043 AK308601	274227	-	TSC_hg19_v1_chr4_-_164088073 BC008207 NM_001128931 NM_138386	274268	-	AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##AK308601|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##BC008207|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##NM_001128931|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##NM_138386|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.995004	0.0	denovo_WM_7:32:0.332	denovo_WM_7:33:0.332	denovo_WM_7:34:0.332
chr3	13044002	13044148	reg1001635.p1	10.634	+	AY653734 NM_014869 TSC_hg19_v1_chr3_-_13009192	-34967	-	TSC_hg19_v1_chr3_-_12941548 BC008088 AF055004	-102467	-	BC011514 BC070209 X03342 D28385 AK311909 TSC_hg19_v1_chr3_-_12883042 NM_000994 NM_001007073	-161032	-	TSC_hg19_v1_chr3_-_13057189 BC071805	13143	-	TSC_hg19_v1_chr3_-_13114618 AK294525 NM_001134382	70523	-	AB020713 TSC_hg19_v1_chr3_-_13384784	340690	-	AY653734|IQSEC1|9922|IQ motif and Sec7 domain 1##NM_014869|IQSEC1|9922|IQ motif and Sec7 domain 1##BC008088|IQSEC1|9922|IQ motif and Sec7 domain 1##AF055004|IQSEC1|9922|IQ motif and Sec7 domain 1##BC011514|RPL32|6161|ribosomal protein L32##BC070209|RPL32|6161|ribosomal protein L32##X03342|RPL32|6161|ribosomal protein L32##D28385|RPL32|6161|ribosomal protein L32##AK311909|RPL32|6161|ribosomal protein L32##NM_000994|RPL32|6161|ribosomal protein L32##NM_001007073|RPL32|6161|ribosomal protein L32##AK294525|IQSEC1|9922|IQ motif and Sec7 domain 1##NM_001134382|IQSEC1|9922|IQ motif and Sec7 domain 1##AB020713|NUP210|23225|nucleoporin 210kDa	0.997103	0.0	denovo_WM_7:-17:0.313	denovo_WM_7:-18:0.313	denovo_WM_7:-19:0.313
chr3	149687783	149687935	reg1001442.p1	10.632	+	BC009781 BC009803 TSC_hg19_v1_chr3_+_149531012 AF037204 AF070558 BC017878	-156829	+	TSC_hg19_v1_chr3_+_149530987 AK313304	-156873	+	TSC_hg19_v1_chr3_+_149530500 NM_007282 NM_183381 AK090638	-157382	+	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	837	-	TSC_hg19_v1_chr3_-_149688960 BC043646	1070	-	BC012363 TSC_hg19_v1_chr3_+_149689094	1221	+	BC009781|RNF13|11342|ring finger protein 13##BC009803|RNF13|11342|ring finger protein 13##AF037204|RNF13|11342|ring finger protein 13##AF070558|RNF13|11342|ring finger protein 13##BC017878|RNF13|11342|ring finger protein 13##AK313304|RNF13|11342|ring finger protein 13##NM_007282|RNF13|11342|ring finger protein 13##NM_183381|RNF13|11342|ring finger protein 13##AK090638|RNF13|11342|ring finger protein 13##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##BC043646|PFN2|5217|profilin 2##BC012363|LOC646903|646903|uncharacterized LOC646903	0.987636	0.0	denovo_WM_7:-13:0.451	denovo_WM_7:-14:0.451
chr14	23182211	23182391	reg1000463.p1	10.631	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-115112	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-124167	-	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	-124215	-	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	53544	+	TSC_hg19_v1_chr14_-_23284568 AK025377	102278	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	102331	-	AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.995757	0.0	
chr5	132298383	132298561	reg1001391.p1	10.631	+	TSC_hg19_v1_chr5_-_132272811 CU687624 CU693016	-25629	-	TSC_hg19_v1_chr5_+_132209359 AJ306405 AY052782 NM_052971 BC070199	-89116	+	TSC_hg19_v1_chr5_+_132202333 NM_014402 AK297061 BC090048 BC064949 AK312148 BC001390	-96125	+	TSC_hg19_v1_chr5_-_132299044 AF213987	545	-	TSC_hg19_v1_chr5_-_132299222 BC063007 BC025700	738	-	TSC_hg19_v1_chr5_-_132299248 BC137226 BC144538	779	-	AJ306405|LEAP2|116842|liver expressed antimicrobial peptide 2##AY052782|LEAP2|116842|liver expressed antimicrobial peptide 2##NM_052971|LEAP2|116842|liver expressed antimicrobial peptide 2##BC070199|LEAP2|116842|liver expressed antimicrobial peptide 2##NM_014402|UQCRQ|27089|ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa##AK297061|UQCRQ|27089|ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa##BC090048|UQCRQ|27089|ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa##BC064949|UQCRQ|27089|ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa##AK312148|UQCRQ|27089|ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa##BC001390|UQCRQ|27089|ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa##AF213987|AFF4|27125|AF4/FMR2 family, member 4##BC063007|AFF4|27125|AF4/FMR2 family, member 4##BC025700|AFF4|27125|AF4/FMR2 family, member 4##BC137226|AFF4|27125|AF4/FMR2 family, member 4##BC144538|AFF4|27125|AF4/FMR2 family, member 4	0.99754	0.0	denovo_WM_7:32:0.449	denovo_WM_7:33:0.449
chr6	422791	422963	reg1001803.p1	10.631	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	-31113	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-130380	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-130792	+	AF508547 BC101697 BC101699 NM_148959	234076	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	270213	-	BC053850 NM_033260	889797	+	NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1	0.382415	0.0	denovo_WM_7:-43:0.224
chr1	160804849	160804978	reg1001899.p1	10.630	+	NM_001033667 NM_002348 BC121049 AF244129 AK292048 AK303403 BC042905 BC064485 BC027920 L42621	-38915	+	AK298548 AK298499 AY358512 AL834424 AK301438 TSC_hg19_v1_chr1_+_160709067 AK290706 AK292097 AK292148 AK301137 AK301432 AF390894 AB027233 NM_021181 AF291815 AJ271869 AJ276429 BC027867 AB590100 AM392941 AM393275 EU832487 EU832567	-95849	+	BT019813 CR457012 AB590257 CU688852 DQ896316 EU176422 M59904 M37766 BC016182 NM_001778 X06341 BC030224 AK225636 AK310624 AK310744	-123327	-	AB528046 AF145782 CU691064 BC053985 AJ245375 AJ245376 AJ245377 BC041607 AF105261 AF242540 AF107761 AK313201 AF117711 AK295950 BC028073 NM_001166663 NM_001166664 NM_016382	27665	-	AY619691 AB036706 AF271386 AK000029 AY619692 AK222533 AY358359 AY157362 AY065972 AY157361 BC020664 NM_017625 AY549722	50045	-	HQ258193 AY065973 AY358905 NM_080878 BC117225 BC143339 BC143341	119646	-	NM_001033667|LY9|4063|lymphocyte antigen 9##NM_002348|LY9|4063|lymphocyte antigen 9##BC121049|LY9|4063|lymphocyte antigen 9##AF244129|LY9|4063|lymphocyte antigen 9##AK292048|LY9|4063|lymphocyte antigen 9##AK303403|LY9|4063|lymphocyte antigen 9##BC042905|LY9|4063|lymphocyte antigen 9##BC064485|LY9|4063|lymphocyte antigen 9##BC027920|LY9|4063|lymphocyte antigen 9##L42621|LY9|4063|lymphocyte antigen 9##AK298548|SLAMF7|57823|SLAM family member 7##AK298499|SLAMF7|57823|SLAM family member 7##AY358512|SLAMF7|57823|SLAM family member 7##AL834424|SLAMF7|57823|SLAM family member 7##AK301438|SLAMF7|57823|SLAM family member 7##AK290706|SLAMF7|57823|SLAM family member 7##AK292097|SLAMF7|57823|SLAM family member 7##AK292148|SLAMF7|57823|SLAM family member 7##AK301137|SLAMF7|57823|SLAM family member 7##AK301432|SLAMF7|57823|SLAM family member 7##AF390894|SLAMF7|57823|SLAM family member 7##AB027233|SLAMF7|57823|SLAM family member 7##NM_021181|SLAMF7|57823|SLAM family member 7##AF291815|SLAMF7|57823|SLAM family member 7##AJ271869|SLAMF7|57823|SLAM family member 7##AJ276429|SLAMF7|57823|SLAM family member 7##BC027867|SLAMF7|57823|SLAM family member 7##AM392941|SLAMF7|57823|SLAM family member 7##AM393275|SLAMF7|57823|SLAM family member 7##EU832487|SLAMF7|57823|SLAM family member 7##EU832567|SLAMF7|57823|SLAM family member 7##BT019813|CD48|962|CD48 molecule##CR457012|CD48|962|CD48 molecule##DQ896316|CD48|962|CD48 molecule##EU176422|CD48|962|CD48 molecule##M59904|CD48|962|CD48 molecule##M37766|CD48|962|CD48 molecule##BC016182|CD48|962|CD48 molecule##NM_001778|CD48|962|CD48 molecule##X06341|CD48|962|CD48 molecule##BC030224|CD48|962|CD48 molecule##AK225636|CD48|962|CD48 molecule##AK310624|CD48|962|CD48 molecule##AK310744|CD48|962|CD48 molecule##AF145782|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC053985|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245375|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245376|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245377|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC041607|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF105261|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF242540|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF107761|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK313201|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF117711|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK295950|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC028073|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166663|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166664|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_016382|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AY619691|ITLN1|55600|intelectin 1 (galactofuranose binding)##AB036706|ITLN1|55600|intelectin 1 (galactofuranose binding)##AF271386|ITLN1|55600|intelectin 1 (galactofuranose binding)##AK000029|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY619692|ITLN1|55600|intelectin 1 (galactofuranose binding)##AK222533|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY358359|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY157362|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY065972|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY157361|ITLN1|55600|intelectin 1 (galactofuranose binding)##BC020664|ITLN1|55600|intelectin 1 (galactofuranose binding)##NM_017625|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY549722|ITLN1|55600|intelectin 1 (galactofuranose binding)##HQ258193|ITLN2|142683|intelectin 2##AY065973|ITLN2|142683|intelectin 2##AY358905|ITLN2|142683|intelectin 2##NM_080878|ITLN2|142683|intelectin 2##BC117225|ITLN2|142683|intelectin 2##BC143339|ITLN2|142683|intelectin 2##BC143341|ITLN2|142683|intelectin 2	0.988044	0.973569	denovo_WM_7:-25:0.643	CTCF.p2:26:0.974
chr2	111966797	111966950	reg1000500.p2	10.629	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-88386	+	AK300513 NM_001142807 BC022268	-476694	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-531051	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	674753	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	674888	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	689312	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.0	0.0	
chr9	100629236	100629380	reg1001791.p2	10.629	+	AB464529 TSC_hg19_v1_chr9_+_100616210	-13106	+	TSC_hg19_v1_chr9_+_100615409 NM_004473	-13837	+	TSC_hg19_v1_chr9_-_100459623 BC014965 NM_000380	-169642	-	TSC_hg19_v1_chr9_-_100684783 CU678254 DQ892983 DQ896231 AY189280 AF151053 AK309270 BC002863 AK000213 AK302701 NM_016481	55502	-	AF306683 AF306682 AL833094 AY255672 NM_197978 AY244805	71213	-	AF228713 AF322875 BC048324 AK292441 NM_018437	77809	-	NM_004473|FOXE1|2304|forkhead box E1 (thyroid transcription factor 2)##BC014965|XPA|7507|xeroderma pigmentosum, complementation group A##NM_000380|XPA|7507|xeroderma pigmentosum, complementation group A##DQ892983|C9orf156|51531|chromosome 9 open reading frame 156##DQ896231|C9orf156|51531|chromosome 9 open reading frame 156##AY189280|C9orf156|51531|chromosome 9 open reading frame 156##AF151053|C9orf156|51531|chromosome 9 open reading frame 156##AK309270|C9orf156|51531|chromosome 9 open reading frame 156##BC002863|C9orf156|51531|chromosome 9 open reading frame 156##AK000213|C9orf156|51531|chromosome 9 open reading frame 156##AK302701|C9orf156|51531|chromosome 9 open reading frame 156##NM_016481|C9orf156|51531|chromosome 9 open reading frame 156##AF306683|HEMGN|55363|hemogen##AF306682|HEMGN|55363|hemogen##AL833094|HEMGN|55363|hemogen##AY255672|HEMGN|55363|hemogen##NM_197978|HEMGN|55363|hemogen##AY244805|HEMGN|55363|hemogen##AF228713|HEMGN|55363|hemogen##AF322875|HEMGN|55363|hemogen##BC048324|HEMGN|55363|hemogen##AK292441|HEMGN|55363|hemogen##NM_018437|HEMGN|55363|hemogen	0.989797	0.0	denovo_WM_7:-28:0.979
chr9	126899830	126900005	reg1001953.p2	10.628	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-125846	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-126034	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-207606	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	120093	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	120328	+	TSC_hg19_v1_chr9_+_127020255 AB026289	120347	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.0	0.0	
chr9	131405796	131405937	reg1001776.p1	10.627	+	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-17123	+	X86901 TSC_hg19_v1_chr9_+_131388179	-17688	+	TSC_hg19_v1_chr9_+_131314868 NM_001130438 NM_001195532 NM_003127 AK294753 AK300386 AK307676 BC034956 AB191262 AB209860 BC051801 J05243 BC053521 U83867	-91076	+	TSC_hg19_v1_chr9_-_131418938 BC001614	13097	-	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	13200	-	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	40138	+	AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##X86901|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001130438|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001195532|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_003127|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK294753|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK300386|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK307676|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC034956|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB191262|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB209860|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC051801|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##J05243|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC053521|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##U83867|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC001614|WDR34|89891|WD repeat domain 34##BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene	0.991743	0.0	denovo_WM_7:-51:0.331	denovo_WM_7:-52:0.331	denovo_WM_7:-53:0.331
chr15	84662483	84662586	reg1001558.p2	10.623	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-339707	+	TSC_hg19_v1_chr15_+_84116176 BC035598 AF036269 AF036270 AF036271 AF036272 CU692124 X99664	-546306	+	AK309086 NM_003027 TSC_hg19_v1_chr15_+_84116127 AK307442 BC042864	-546474	+	NM_001243531	178707	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	481747	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	534938	-	AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##BC035598|SH3GL3|6457|SH3-domain GRB2-like 3##AF036269|SH3GL3|6457|SH3-domain GRB2-like 3##AF036270|SH3GL3|6457|SH3-domain GRB2-like 3##AF036271|SH3GL3|6457|SH3-domain GRB2-like 3##AF036272|SH3GL3|6457|SH3-domain GRB2-like 3##X99664|SH3GL3|6457|SH3-domain GRB2-like 3##AK309086|SH3GL3|6457|SH3-domain GRB2-like 3##NM_003027|SH3GL3|6457|SH3-domain GRB2-like 3##AK307442|SH3GL3|6457|SH3-domain GRB2-like 3##BC042864|SH3GL3|6457|SH3-domain GRB2-like 3##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73	0.044173	0.875766	CTCF.p2:34:0.876
chr22	42443210	42443348	reg1001428.p2	10.621	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	-48504	+	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	-70371	+	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	-100156	-	AB528190 CU013127 CU013415 DQ891874 DQ895062 CR456527 M38083 BC000095 TSC_hg19_v1_chr22_-_42466570	23156	-	TSC_hg19_v1_chr22_-_42466632 M29276	23350	-	M62783 TSC_hg19_v1_chr22_-_42466814	23515	-	AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##CU013127|NAGA|4668|N-acetylgalactosaminidase, alpha-##CU013415|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ891874|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ895062|NAGA|4668|N-acetylgalactosaminidase, alpha-##CR456527|NAGA|4668|N-acetylgalactosaminidase, alpha-##M38083|NAGA|4668|N-acetylgalactosaminidase, alpha-##BC000095|NAGA|4668|N-acetylgalactosaminidase, alpha-##M29276|NAGA|4668|N-acetylgalactosaminidase, alpha-##M62783|NAGA|4668|N-acetylgalactosaminidase, alpha-	0.986704	0.0	
chr1	244436410	244436545	reg1001641.p2	10.619	+	TSC_hg19_v1_chr1_+_244217286 AK310634	-219182	+	BC078175 AJ001388 NM_006352	-219934	+	TSC_hg19_v1_chr1_+_244214584 AK291408 AK293892 BC036677	-221894	+	BC054479 NM_001012970	79459	+	CU680302 EU831433 EU831525 TSC_hg19_v1_chr1_-_244615212 AK025514 AK303886 BC012356	178699	-	TSC_hg19_v1_chr1_-_244615392 AK308749 NM_001126	178861	-	BC078175|ZNF238|10472|zinc finger protein 238##AJ001388|ZNF238|10472|zinc finger protein 238##NM_006352|ZNF238|10472|zinc finger protein 238##AK291408|ZNF238|10472|zinc finger protein 238##AK293892|ZNF238|10472|zinc finger protein 238##BC036677|ZNF238|10472|zinc finger protein 238##BC054479|C1orf100|200159|chromosome 1 open reading frame 100##NM_001012970|C1orf100|200159|chromosome 1 open reading frame 100##EU831433|ADSS|159|adenylosuccinate synthase##EU831525|ADSS|159|adenylosuccinate synthase##AK025514|ADSS|159|adenylosuccinate synthase##AK303886|ADSS|159|adenylosuccinate synthase##BC012356|ADSS|159|adenylosuccinate synthase##AK308749|ADSS|159|adenylosuccinate synthase##NM_001126|ADSS|159|adenylosuccinate synthase	2.252566	1.587703	CTCF.p2:-14:0.599	CTCF.p2:39:0.989	denovo_WM_7:-59:0.440	denovo_WM_7:-74:0.343	denovo_WM_7:-90:0.447
chr5	10251269	10251335	reg1000917.p2	10.619	+	TSC_hg19_v1_chr5_+_10250440 DQ892743 DQ895989 AB383748 BC002971	-852	+	TSC_hg19_v1_chr5_+_10250410 D43950 BC006543 AK293437 AK303147 AK289353	-880	+	AK303086 TSC_hg19_v1_chr5_+_10250407	-897	+	BC001573 TSC_hg19_v1_chr5_-_10307978 AJ278125 AK074197	56629	-	NM_138809	56865	-	TSC_hg19_v1_chr5_-_10353712 BC032907	102411	-	DQ892743|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##DQ895989|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##BC002971|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##D43950|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##BC006543|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK293437|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK303147|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK289353|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK303086|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##BC001573|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##AJ278125|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##AK074197|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##NM_138809|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)	0.0	0.0	
chr6_mcf_hap5	2967970	2968088	reg1001485.p2	10.618	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997015	0.0	denovo_WM_7:0:0.424	denovo_WM_7:0:0.424
chr8	104348751	104348913	reg1001738.p1	10.618	+	NM_001164616 NM_003506 TSC_hg19_v1_chr8_+_104311103 AK299341 AK296824 BC060836 BC036106 AB012911 AK304092 AK316544	-37741	+	NM_001164615 BX640609 AK313789	-38158	+	TSC_hg19_v1_chr8_+_104152984 NM_001024372 NM_024812 BC035038 AK022077 BC011517 AK093819 AF371319 AF371323 DQ893318 DQ896633	-195832	+	TSC_hg19_v1_chr8_+_104383774 AK130063 BC021025 AY358914 AK300273	34908	+	BC014245 NM_138455 AY136825 TSC_hg19_v1_chr8_+_104383792	34967	+	AK027799 NM_015420 AK074725	78126	+	NM_001164616|FZD6|8323|frizzled family receptor 6##NM_003506|FZD6|8323|frizzled family receptor 6##AK299341|FZD6|8323|frizzled family receptor 6##AK296824|FZD6|8323|frizzled family receptor 6##BC060836|FZD6|8323|frizzled family receptor 6##BC036106|FZD6|8323|frizzled family receptor 6##AB012911|FZD6|8323|frizzled family receptor 6##AK304092|FZD6|8323|frizzled family receptor 6##AK316544|FZD6|8323|frizzled family receptor 6##NM_001164615|FZD6|8323|frizzled family receptor 6##BX640609|FZD6|8323|frizzled family receptor 6##AK313789|FZD6|8323|frizzled family receptor 6##NM_001024372|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_024812|BAALC|79870|brain and acute leukemia, cytoplasmic##BC035038|BAALC|79870|brain and acute leukemia, cytoplasmic##AK022077|BAALC|79870|brain and acute leukemia, cytoplasmic##BC011517|BAALC|79870|brain and acute leukemia, cytoplasmic##AK093819|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371319|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371323|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ893318|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ896633|BAALC|79870|brain and acute leukemia, cytoplasmic##AK130063|CTHRC1|115908|collagen triple helix repeat containing 1##BC021025|CTHRC1|115908|collagen triple helix repeat containing 1##AY358914|CTHRC1|115908|collagen triple helix repeat containing 1##AK300273|CTHRC1|115908|collagen triple helix repeat containing 1##BC014245|CTHRC1|115908|collagen triple helix repeat containing 1##NM_138455|CTHRC1|115908|collagen triple helix repeat containing 1##AY136825|CTHRC1|115908|collagen triple helix repeat containing 1##AK027799|DCAF13|25879|DDB1 and CUL4 associated factor 13##NM_015420|DCAF13|25879|DDB1 and CUL4 associated factor 13##AK074725|DCAF13|25879|DDB1 and CUL4 associated factor 13	0.999722	0.0	denovo_WM_7:-33:0.298	denovo_WM_7:-34:0.298	denovo_WM_7:-35:0.298
chr17	70388823	70388962	reg1001831.p1	10.615	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-271652	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-271722	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-271733	+	AK000477 TSC_hg19_v1_chr17_-_70588944	200051	-	AF331643 TSC_hg19_v1_chr17_-_71088816	699924	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	699931	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.995782	0.0	denovo_WM_7:-13:0.214	denovo_WM_7:-15:0.561
chr7	143077266	143077442	reg1001772.p2	10.613	+	CU692276 AB384523 TSC_hg19_v1_chr7_-_143059807 AK124557 NM_001031690 BC045611	-17579	-	AK291470 BC050543 NM_014690	-18196	-	TSC_hg19_v1_chr7_+_143058809 AK316227	-18553	+	TSC_hg19_v1_chr7_+_143078362 BC017183 NM_001010972 NM_003461	1010	+	BC008743 TSC_hg19_v1_chr7_+_143078395	1041	+	BC002323 TSC_hg19_v1_chr7_+_143078404	1048	+	AK124557|FAM131B|9715|family with sequence similarity 131, member B##NM_001031690|FAM131B|9715|family with sequence similarity 131, member B##BC045611|FAM131B|9715|family with sequence similarity 131, member B##AK291470|FAM131B|9715|family with sequence similarity 131, member B##BC050543|FAM131B|9715|family with sequence similarity 131, member B##NM_014690|FAM131B|9715|family with sequence similarity 131, member B##AK316227|ZYX|7791|zyxin##BC017183|ZYX|7791|zyxin##NM_001010972|ZYX|7791|zyxin##NM_003461|ZYX|7791|zyxin##BC008743|ZYX|7791|zyxin##BC002323|ZYX|7791|zyxin	0.999263	0.9627	denovo_WM_7:-18:0.295	denovo_WM_7:-19:0.295	denovo_WM_7:-20:0.295	CTCF.p2:72:0.963
chrX	23916084	23916228	reg1002173.p1	10.613	+	TSC_hg19_v1_chrX_-_23855464 AK303908 D28399	-60696	-	TSC_hg19_v1_chrX_+_23801432 M55580 AY841998 AB464243 AM392717 BT006825 CR450294	-114707	+	NM_002970 TSC_hg19_v1_chrX_+_23801289 AK310078 BC008424 AK312162 AK310094 M77693 AL050290 BC002503 AK315888	-114844	+	TSC_hg19_v1_chrX_-_23926052 AY359114 AK311865 AF061264 BC016814 BC002333 BC010102 NM_024122	9854	-	AK058173 NM_001169574 NM_152761 BC117344 BC117346 BC144007	10010	+	AK057298 NM_030624	129146	-	AK303908|RPL9|6133|ribosomal protein L9##M55580|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AY841998|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BT006825|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##CR450294|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##NM_002970|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK310078|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC008424|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK312162|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##M77693|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AL050290|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC002503|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK315888|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AY359114|APOO|79135|apolipoprotein O##AK311865|APOO|79135|apolipoprotein O##AF061264|APOO|79135|apolipoprotein O##BC016814|APOO|79135|apolipoprotein O##BC002333|APOO|79135|apolipoprotein O##BC010102|APOO|79135|apolipoprotein O##NM_024122|APOO|79135|apolipoprotein O##AK058173|CXorf58|254158|chromosome X open reading frame 58##NM_001169574|CXorf58|254158|chromosome X open reading frame 58##NM_152761|CXorf58|254158|chromosome X open reading frame 58##BC117344|CXorf58|254158|chromosome X open reading frame 58##BC117346|CXorf58|254158|chromosome X open reading frame 58##BC144007|CXorf58|254158|chromosome X open reading frame 58##AK057298|KLHL15|80311|kelch-like 15 (Drosophila)##NM_030624|KLHL15|80311|kelch-like 15 (Drosophila)	1.464158	0.0	denovo_WM_7:22:0.322	denovo_WM_7:-34:0.331	denovo_WM_7:-35:0.331	denovo_WM_7:-36:0.331
chr17	26212698	26212841	reg1001327.p1	10.608	+	BC130283 BC144126 U05810 L09210 X73029 AF068236 AK304252 NM_000625 TSC_hg19_v1_chr17_-_26127556	-85254	-	U31511 TSC_hg19_v1_chr17_-_26127402	-85371	-	TSC_hg19_v1_chr17_+_25958264 AB003517 AB008492	-254497	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	7622	-	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	156884	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	157232	+	BC130283|NOS2|4843|nitric oxide synthase 2, inducible##BC144126|NOS2|4843|nitric oxide synthase 2, inducible##U05810|NOS2|4843|nitric oxide synthase 2, inducible##L09210|NOS2|4843|nitric oxide synthase 2, inducible##X73029|NOS2|4843|nitric oxide synthase 2, inducible##AF068236|NOS2|4843|nitric oxide synthase 2, inducible##AK304252|NOS2|4843|nitric oxide synthase 2, inducible##NM_000625|NOS2|4843|nitric oxide synthase 2, inducible##U31511|NOS2|4843|nitric oxide synthase 2, inducible##AB003517|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB008492|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK024686|NLK|51701|nemo-like kinase	1.276717	0.0	denovo_WM_7:-34:0.252
chr12	120557162	120557301	reg1001747.p1	10.602	+	TSC_hg19_v1_chr12_+_120554697 BC041995 AK130486	-2522	+	TSC_hg19_v1_chr12_-_120554632 NM_001167606 NM_006861	-2592	-	TSC_hg19_v1_chr12_-_120554558 AK300127	-2666	-	TSC_hg19_v1_chr12_-_120632504 AB587307 AK297271 BC153881 D86973 NM_006836	75257	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	81670	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	81679	-	NM_001167606|RAB35|11021|RAB35, member RAS oncogene family##NM_006861|RAB35|11021|RAB35, member RAS oncogene family##AK300127|RAB35|11021|RAB35, member RAS oncogene family##AK297271|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC153881|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##D86973|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##NM_006836|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0	0.999035	0.0	
chr3	12703794	12703974	reg1001842.p1	10.601	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-105304	+	NM_001195279	-116922	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-177648	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	1583	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	1731	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	1790	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	2.986312	0.0	denovo_WM_7:10:0.468	denovo_WM_7:11:0.468	denovo_WM_7:-19:0.301	denovo_WM_7:-20:0.243	denovo_WM_7:-37:0.244	denovo_WM_7:-38:0.302
chr8	103674806	103674938	reg1001128.p1	10.600	+	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	-6940	-	BC011538 NM_001032282 S81439	-8780	-	NM_024410 AK315276 BC104456 BC104457	-111011	+	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	201487	-	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	201523	-	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	358395	+	AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	0.0	0.0	
chr1	105302840	105302989	reg1002182.p1	10.598	+	NM_004038 NM_001008219 NM_001008218 BC063129 BC070302 AK313275 BC092444 BC132985 BC132987 BC132997 BC144452 BC132995	-1010412	+	NM_001008221 AK292341	-1010636	+	AK292341 NM_001008221	-1063843	-	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	2296451	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	2379828	+	AB023193 TSC_hg19_v1_chr1_+_107683657	2380690	+	NM_004038|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008219|AMY1C|278|amylase, alpha 1C (salivary)##NM_001008218|AMY1B|277|amylase, alpha 1B (salivary)##BC063129|AMY1A|276|amylase, alpha 1A (salivary)##BC070302|AMY1A|276|amylase, alpha 1A (salivary)##AK313275|AMY1A|276|amylase, alpha 1A (salivary)##BC092444|AMY1A|276|amylase, alpha 1A (salivary)##BC132985|AMY1A|276|amylase, alpha 1A (salivary)##BC132987|AMY1A|276|amylase, alpha 1A (salivary)##BC132997|AMY1A|276|amylase, alpha 1A (salivary)##BC144452|AMY1A|276|amylase, alpha 1A (salivary)##BC132995|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AB023193|NTNG1|22854|netrin G1	0.040778	0.0	
chr3	49466784	49466916	reg1001801.p1	10.598	+	TSC_hg19_v1_chr3_-_49466744 AK313073 NM_032316 AK301846	-98	-	TSC_hg19_v1_chr3_-_49466731 BC005050 AK094248 AF538150 AJ299740 BC050653	-147	-	NM_000481 NM_001164710 NM_001164711 NM_001164712 TSC_hg19_v1_chr3_-_49460121	-6734	-	TSC_hg19_v1_chr3_+_49506079 NM_001177643	39257	+	TSC_hg19_v1_chr3_+_49507721 NM_001165928 NM_001177634 NM_001177635 NM_001177636 NM_001177637 NM_001177638 NM_001177639 NM_001177640 NM_001177641 NM_001177642 NM_001177644 NM_004393 L19711 BC012740 BC014616 AK291692	40941	+	TSC_hg19_v1_chr3_+_49547870 DQ893491 DQ896435	81067	+	AK313073|NICN1|84276|nicolin 1##NM_032316|NICN1|84276|nicolin 1##AK301846|NICN1|84276|nicolin 1##BC005050|NICN1|84276|nicolin 1##AK094248|NICN1|84276|nicolin 1##AF538150|NICN1|84276|nicolin 1##AJ299740|NICN1|84276|nicolin 1##BC050653|NICN1|84276|nicolin 1##NM_000481|AMT|275|aminomethyltransferase##NM_001164710|AMT|275|aminomethyltransferase##NM_001164711|AMT|275|aminomethyltransferase##NM_001164712|AMT|275|aminomethyltransferase##NM_001177643|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001165928|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177634|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177635|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177636|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177637|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177638|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177639|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177640|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177641|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177642|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177644|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_004393|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##L19711|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC012740|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC014616|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK291692|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ893491|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ896435|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)	0.417982	0.0	denovo_WM_7:8:0.298
chr17	78884546	78884669	reg1001749.p1	10.594	+	BC008754 AK055912 TSC_hg19_v1_chr17_+_78518849	-365789	+	TSC_hg19_v1_chr17_+_78518628 AK295964 NM_001163034 NM_020761 AK296321 BC064515	-365958	+	EU831771 EU831849 BC089441 TSC_hg19_v1_chr17_-_78450408 U61849 AK127335 NM_002522	-434280	-	TSC_hg19_v1_chr17_+_78935064 BC073898	50525	+	TSC_hg19_v1_chr17_+_78965640 NM_024591	81034	+	TSC_hg19_v1_chr17_+_78965674 AK292105 AK223187 BC010108 AK021811 CU679625 AY329087 CR457284	81087	+	AK055912|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK295964|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_001163034|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_020761|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK296321|RPTOR|57521|regulatory associated protein of MTOR, complex 1##BC064515|RPTOR|57521|regulatory associated protein of MTOR, complex 1##EU831771|NPTX1|4884|neuronal pentraxin I##EU831849|NPTX1|4884|neuronal pentraxin I##BC089441|NPTX1|4884|neuronal pentraxin I##U61849|NPTX1|4884|neuronal pentraxin I##AK127335|NPTX1|4884|neuronal pentraxin I##NM_002522|NPTX1|4884|neuronal pentraxin I##BC073898|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_024591|CHMP6|79643|charged multivesicular body protein 6##AK292105|CHMP6|79643|charged multivesicular body protein 6##AK223187|CHMP6|79643|charged multivesicular body protein 6##BC010108|CHMP6|79643|charged multivesicular body protein 6##AK021811|CHMP6|79643|charged multivesicular body protein 6##AY329087|CHMP6|79643|charged multivesicular body protein 6##CR457284|CHMP6|79643|charged multivesicular body protein 6	0.993188	0.0	denovo_WM_7:43:0.757
chr2	220076376	220076490	reg1001674.p2	10.592	+	TSC_hg19_v1_chr2_+_220071949 AK074571	-4479	+	TSC_hg19_v1_chr2_+_220071528 AK091345 AX746924 AK292622 AK293714 BC018415 NM_138802	-4859	+	TSC_hg19_v1_chr2_+_220043005 BC002420	-33369	+	AF076775 DQ891876 DQ895063 CU674272 TSC_hg19_v1_chr2_-_220083433	6981	-	AK057026 BC000559 AJ289233 AK303230 TSC_hg19_v1_chr2_-_220083681	7241	-	TSC_hg19_v1_chr2_-_220083702 NM_005689	7272	-	AK074571|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK091345|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK292622|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK293714|ZFAND2B|130617|zinc finger, AN1-type domain 2B##BC018415|ZFAND2B|130617|zinc finger, AN1-type domain 2B##NM_138802|ZFAND2B|130617|zinc finger, AN1-type domain 2B##BC002420|FAM134A|79137|family with sequence similarity 134, member A##AF076775|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##DQ891876|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##DQ895063|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AK057026|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##BC000559|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AJ289233|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AK303230|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##NM_005689|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6	2.003536	0.035754	denovo_WM_7:61:0.331	denovo_WM_7:62:0.331	denovo_WM_7:63:0.331
chr13	29101822	29101969	reg1001981.p1	10.587	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	-32651	-	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	-389229	+	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	-427208	-	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	131313	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	131399	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	191160	-	BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3	1.284108	0.0	denovo_WM_7:0:0.848	denovo_WM_7:-42:0.240
chr1	179286745	179286880	reg1001396.p1	10.585	+	TSC_hg19_v1_chr1_+_179262970 BC028940	-23824	+	AK026611 TSC_hg19_v1_chr1_+_179262936 AL833625	-23869	+	TSC_hg19_v1_chr1_+_179262931 AK300551 AK290659 AK294047	-23903	+	BX647935 NM_144696 AK302972	48052	+	AJ279254 NM_014625 BC029141	258264	-	AK126889 NM_001199091 NM_001199085 NM_173533	273939	+	BC028940|SOAT1|6646|sterol O-acyltransferase 1##AK026611|SOAT1|6646|sterol O-acyltransferase 1##AL833625|SOAT1|6646|sterol O-acyltransferase 1##AK300551|SOAT1|6646|sterol O-acyltransferase 1##AK290659|SOAT1|6646|sterol O-acyltransferase 1##AK294047|SOAT1|6646|sterol O-acyltransferase 1##BX647935|AXDND1|126859|axonemal dynein light chain domain containing 1##NM_144696|AXDND1|126859|axonemal dynein light chain domain containing 1##AK302972|AXDND1|126859|axonemal dynein light chain domain containing 1##AJ279254|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##NM_014625|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##BC029141|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##AK126889|TDRD5|163589|tudor domain containing 5##NM_001199091|TDRD5|163589|tudor domain containing 5##NM_001199085|TDRD5|163589|tudor domain containing 5##NM_173533|TDRD5|163589|tudor domain containing 5	0.999535	0.0	denovo_WM_7:-27:0.849
chr7	74058229	74058367	reg1001704.p2	10.583	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-189863	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-189990	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-190134	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	13723	+	TSC_hg19_v1_chr7_+_74072046 BC070484	13746	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	13824	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	1.774711	0.0	denovo_WM_7:-11:0.397	denovo_WM_7:-12:0.444	denovo_WM_7:47:0.835
chr11	60828668	60828833	reg1001595.p1	10.582	+	NM_006725 TSC_hg19_v1_chr11_+_60739236 AK128419 AK312749 BC078669 BC033755 X60992 AK292704 DQ786329 DQ786330 U66142 U66145 U66146	-89525	+	BC037974 BC025710 AF135600 AB020598 NM_016582	-109564	-	TSC_hg19_v1_chr11_+_60691945 NM_017870 NM_178031 AK000546 BC114569 BC032059	-136815	+	NM_014207 AY541703 TSC_hg19_v1_chr11_+_60869960 AK292698 X04391 BC027901 DQ892077 DQ895270	41229	+	BC141827 BC142702 AK097326 TSC_hg19_v1_chr11_-_60928910 NM_017966 AL834261 AK302384	100180	-	NM_001079807 AK301286 AK301293 AK301305 AK312941 AK125628 AK225669 AK225679 AK291864 BC150659 BC171808 BC171814 BC171815 BC171910 BC171920 AB528778	142258	+	NM_006725|CD6|923|CD6 molecule##AK128419|CD6|923|CD6 molecule##AK312749|CD6|923|CD6 molecule##BC078669|CD6|923|CD6 molecule##BC033755|CD6|923|CD6 molecule##X60992|CD6|923|CD6 molecule##AK292704|CD6|923|CD6 molecule##DQ786329|CD6|923|CD6 molecule##DQ786330|CD6|923|CD6 molecule##U66142|CD6|923|CD6 molecule##U66145|CD6|923|CD6 molecule##U66146|CD6|923|CD6 molecule##BC037974|SLC15A3|51296|solute carrier family 15, member 3##BC025710|SLC15A3|51296|solute carrier family 15, member 3##AF135600|SLC15A3|51296|solute carrier family 15, member 3##AB020598|SLC15A3|51296|solute carrier family 15, member 3##NM_016582|SLC15A3|51296|solute carrier family 15, member 3##NM_017870|TMEM132A|54972|transmembrane protein 132A##NM_178031|TMEM132A|54972|transmembrane protein 132A##AK000546|TMEM132A|54972|transmembrane protein 132A##BC114569|TMEM132A|54972|transmembrane protein 132A##BC032059|TMEM132A|54972|transmembrane protein 132A##NM_014207|CD5|921|CD5 molecule##AY541703|CD5|921|CD5 molecule##AK292698|CD5|921|CD5 molecule##X04391|CD5|921|CD5 molecule##BC027901|CD5|921|CD5 molecule##DQ892077|CD5|921|CD5 molecule##DQ895270|CD5|921|CD5 molecule##BC141827|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##BC142702|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK097326|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_017966|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AL834261|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK302384|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_001079807|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301286|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301293|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301305|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK312941|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK125628|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225669|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225679|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK291864|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC150659|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171808|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171814|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171815|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##BC171910|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171920|PGA4|643847|pepsinogen 4, group I (pepsinogen A)	0.999266	0.0	denovo_WM_7:6:0.874
chr2	32062509	32062611	reg1001691.p1	10.579	+	EU832809 GQ129244 HQ258121 M74047 EF560740 AK316597 BC112252 BC113641 NM_000348	-256557	-	TSC_hg19_v1_chr2_-_31637599 NM_000379	-424949	-	TSC_hg19_v1_chr2_-_31637569 U39487 D11456 U06117	-424989	-	TSC_hg19_v1_chr2_-_32235713 AF363446 BC018733 NM_001137602 NM_015955	173098	-	TSC_hg19_v1_chr2_-_32235732 AB041018	173168	-	TSC_hg19_v1_chr2_-_32235815 BC070046	173262	-	EU832809|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##GQ129244|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##HQ258121|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##M74047|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##EF560740|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##AK316597|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC112252|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC113641|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000348|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000379|XDH|7498|xanthine dehydrogenase##U39487|XDH|7498|xanthine dehydrogenase##D11456|XDH|7498|xanthine dehydrogenase##U06117|XDH|7498|xanthine dehydrogenase##AF363446|MEMO1|51072|mediator of cell motility 1##BC018733|MEMO1|51072|mediator of cell motility 1##NM_001137602|MEMO1|51072|mediator of cell motility 1##NM_015955|MEMO1|51072|mediator of cell motility 1##AB041018|MEMO1|51072|mediator of cell motility 1##BC070046|MEMO1|51072|mediator of cell motility 1	1.999816	0.024861	denovo_WM_7:52:0.268	denovo_WM_7:53:0.224	denovo_WM_7:71:0.232	denovo_WM_7:72:0.277
chr1	222221819	222221962	reg1001863.p1	10.577	+	TSC_hg19_v1_chr1_-_221915485 NM_007207 NM_144729	-306404	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	-306460	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	-306482	-	AY358602 BC007638 BC016552 NM_024746	499544	-	L39060 AK001054 AK290970 TSC_hg19_v1_chr1_-_222763247 BC013808 AK315740 AK299536 NM_001201536 NM_005681 NM_139352	541287	-	TSC_hg19_v1_chr1_+_222791438 NM_198551 AK307412 AY359091 DQ166034	569510	+	NM_007207|DUSP10|11221|dual specificity phosphatase 10##NM_144729|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AY358602|HHIPL2|79802|HHIP-like 2##BC007638|HHIPL2|79802|HHIP-like 2##BC016552|HHIPL2|79802|HHIP-like 2##NM_024746|HHIPL2|79802|HHIP-like 2##L39060|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK001054|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK290970|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##BC013808|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK315740|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK299536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_001201536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_005681|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_139352|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_198551|MIA3|375056|melanoma inhibitory activity family, member 3##AK307412|MIA3|375056|melanoma inhibitory activity family, member 3##AY359091|MIA3|375056|melanoma inhibitory activity family, member 3##DQ166034|MIA3|375056|melanoma inhibitory activity family, member 3	0.678306	0.0	denovo_WM_7:12:0.248
chr14	22750404	22750553	reg1002069.p1	10.574	+	AB463964 NM_001001912 AY726598	-617156	+	NM_001005466 AB529274 BC137371 BC137382	-647432	-	AB528817 NM_001005465	-711604	-	X58763 TSC_hg19_v1_chr14_+_22989364	238871	+	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	307608	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	307656	-	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##NM_001005465|OR10G3|26533|olfactory receptor, family 10, subfamily G, member 3##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1	0.999822	0.0	denovo_WM_7:-3:0.419	denovo_WM_7:-4:0.419
chr17	80642118	80642245	reg1001024.p1	10.574	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	-35898	-	TSC_hg19_v1_chr17_+_80477607 NM_004514	-164591	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-225539	+	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	14353	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	32425	+	TSC_hg19_v1_chr17_+_80693490 NM_022158 AK294871 BC042680 AJ404615 CU692116	51281	+	AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein##NM_022158|FN3K|64122|fructosamine 3 kinase##AK294871|FN3K|64122|fructosamine 3 kinase##BC042680|FN3K|64122|fructosamine 3 kinase##AJ404615|FN3K|64122|fructosamine 3 kinase	1.662065	0.0	denovo_WM_7:-16:0.637	denovo_WM_7:-73:0.248	denovo_WM_7:-74:0.248	denovo_WM_7:-75:0.248	denovo_WM_7:-76:0.248
chr12	54426513	54426637	reg1001420.p1	10.570	+	NM_004503 S82986 BC074844 BC074845 AB587587 CR456954	-4326	+	BC034922 BC044635 M16938 TSC_hg19_v1_chr12_+_54410917 AK314829	-15651	+	NM_014620 NM_153693 TSC_hg19_v1_chr12_+_54410671 X07495	-15898	+	NM_018953 AB463752	291	+	BC050442 NM_153633 AB464580 CU690682 EU446482	21108	+	TSC_hg19_v1_chr12_+_54519846 BC009385	93283	+	NM_004503|HOXC6|3223|homeobox C6##S82986|HOXC6|3223|homeobox C6##BC074844|HOXC6|3223|homeobox C6##BC074845|HOXC6|3223|homeobox C6##CR456954|HOXC6|3223|homeobox C6##BC034922|HOXC5|3222|homeobox C5##BC044635|HOXC5|3222|homeobox C5##M16938|HOXC6|3223|homeobox C6##AK314829|HOXC6|3223|homeobox C6##NM_014620|HOXC4|3221|homeobox C4##NM_153693|HOXC6|3223|homeobox C6##X07495|HOXC4|3221|homeobox C4##NM_018953|HOXC5|3222|homeobox C5##BC050442|HOXC4|3221|homeobox C4##NM_153633|HOXC4|3221|homeobox C4##EU446482|HOXC6|3223|homeobox C6##BC009385|LOC400043|400043|uncharacterized LOC400043	0.994589	0.064173	denovo_WM_7:10:0.310	denovo_WM_7:11:0.622
chr2	231899496	231899595	reg1001625.p2	10.569	+	NM_139073 AK093385 AX748090 BC036248 AK126086 BC047704 CU690472	-38653	+	BC032694 NM_005683	-109605	-	TSC_hg19_v1_chr2_+_231729704 AY049777 EU831609 EU831632 EU831696 EU832488 EU832568 AB003629 CR457208	-169823	+	TSC_hg19_v1_chr2_+_231902259 NM_001144994	2692	+	TSC_hg19_v1_chr2_+_231921588 NM_001191037 NM_002807 AK307415 BC094720	22032	+	TSC_hg19_v1_chr2_+_231921606 BC064398	22056	+	NM_139073|SPATA3|130560|spermatogenesis associated 3##AK093385|SPATA3|130560|spermatogenesis associated 3##BC036248|SPATA3|130560|spermatogenesis associated 3##AK126086|SPATA3|130560|spermatogenesis associated 3##BC047704|SPATA3|130560|spermatogenesis associated 3##BC032694|GPR55|9290|G protein-coupled receptor 55##NM_005683|GPR55|9290|G protein-coupled receptor 55##AY049777|ITM2C|81618|integral membrane protein 2C##EU831609|ITM2C|81618|integral membrane protein 2C##EU831632|ITM2C|81618|integral membrane protein 2C##EU831696|ITM2C|81618|integral membrane protein 2C##EU832488|ITM2C|81618|integral membrane protein 2C##EU832568|ITM2C|81618|integral membrane protein 2C##AB003629|ITM2C|81618|integral membrane protein 2C##CR457208|ITM2C|81618|integral membrane protein 2C##NM_001144994|C2orf72|257407|chromosome 2 open reading frame 72##NM_001191037|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##NM_002807|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307415|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC094720|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC064398|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.993198	0.0	
chr14	54904343	54904472	reg1001885.p1	10.566	+	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	-40686	+	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	-480874	-	NM_130851	-483138	-	TSC_hg19_v1_chr14_-_54908095 BX248284 AY358635 AK074781 AK307074 AK311897 AF070654 AF104398 NM_005776 BC103741	3709	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	51278	-	TSC_hg19_v1_chr14_-_54955728 AB001106 BX647679 NM_004124	51348	-	AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##NM_130851|BMP4|652|bone morphogenetic protein 4##BX248284|CNIH|10175|cornichon homolog (Drosophila)##AY358635|CNIH|10175|cornichon homolog (Drosophila)##AK074781|CNIH|10175|cornichon homolog (Drosophila)##AK307074|CNIH|10175|cornichon homolog (Drosophila)##AK311897|CNIH|10175|cornichon homolog (Drosophila)##AF070654|CNIH|10175|cornichon homolog (Drosophila)##AF104398|CNIH|10175|cornichon homolog (Drosophila)##NM_005776|CNIH|10175|cornichon homolog (Drosophila)##BC103741|CNIH|10175|cornichon homolog (Drosophila)##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta##AB001106|GMFB|2764|glia maturation factor, beta##BX647679|GMFB|2764|glia maturation factor, beta##NM_004124|GMFB|2764|glia maturation factor, beta	0.825227	0.0	denovo_WM_7:-4:0.696
chr2	32305772	32305917	reg1001742.p1	10.566	+	TSC_hg19_v1_chr2_+_32288665 AB029006 BC150260 NM_014946 NM_199436 AJ246001	-17144	+	TSC_hg19_v1_chr2_-_32264863 AF226998 NM_032574 AK295755 BC015970	-40976	-	AK057760 TSC_hg19_v1_chr2_-_32236109	-69738	-	TSC_hg19_v1_chr2_+_32390932 NM_001193513 NM_001193514 NM_001193515 NM_017964 AK055663 AK096672 AK127716 AK304225 BC066903 EF560719 EF560726 AL832755 AF173387	85085	+	AY358152 BC031555 AK292673 AK314762 AK095467 NM_001199138	184085	-	AY035391 NM_001199139 AY027787 AY027788 AY027789 AY027790 NM_021209 AF376061	184961	-	AB029006|SPAST|6683|spastin##BC150260|SPAST|6683|spastin##NM_014946|SPAST|6683|spastin##NM_199436|SPAST|6683|spastin##AJ246001|SPAST|6683|spastin##AF226998|DPY30|84661|dpy-30 homolog (C. elegans)##NM_032574|DPY30|84661|dpy-30 homolog (C. elegans)##BC015970|DPY30|84661|dpy-30 homolog (C. elegans)##AK057760|MEMO1|51072|mediator of cell motility 1##NM_001193513|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193514|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193515|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_017964|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK055663|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK096672|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK127716|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK304225|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##BC066903|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560719|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560726|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AL832755|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AF173387|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AY358152|NLRC4|58484|NLR family, CARD domain containing 4##BC031555|NLRC4|58484|NLR family, CARD domain containing 4##AK292673|NLRC4|58484|NLR family, CARD domain containing 4##AK314762|NLRC4|58484|NLR family, CARD domain containing 4##AK095467|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199138|NLRC4|58484|NLR family, CARD domain containing 4##AY035391|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199139|NLRC4|58484|NLR family, CARD domain containing 4##AY027787|NLRC4|58484|NLR family, CARD domain containing 4##AY027788|NLRC4|58484|NLR family, CARD domain containing 4##AY027789|NLRC4|58484|NLR family, CARD domain containing 4##AY027790|NLRC4|58484|NLR family, CARD domain containing 4##NM_021209|NLRC4|58484|NLR family, CARD domain containing 4##AF376061|NLRC4|58484|NLR family, CARD domain containing 4	1.985468	0.0	denovo_WM_7:13:0.268	denovo_WM_7:14:0.695	denovo_WM_7:29:0.835
chr10	98033343	98033498	reg1001636.p1	10.565	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-2177	-	BC109045 BC109046 TSC_hg19_v1_chr10_+_97889812 AK095317 BC030967	-143678	+	TSC_hg19_v1_chr10_+_97889471 CR627437 NM_014803 BC011627	-143924	+	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	30748	+	AF367761 NM_001040102 NM_001040103 NM_033207	85654	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	240143	-	AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC109045|ZNF518A|9849|zinc finger protein 518A##BC109046|ZNF518A|9849|zinc finger protein 518A##BC030967|ZNF518A|9849|zinc finger protein 518A##CR627437|ZNF518A|9849|zinc finger protein 518A##NM_014803|ZNF518A|9849|zinc finger protein 518A##NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2	0.996828	0.0	denovo_WM_7:105:0.918
chr12	122938035	122938162	reg1001344.p1	10.565	+	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	-30861	-	AF045652 AF045653 AY563000 TSC_hg19_v1_chr12_-_122839059	-99061	-	TSC_hg19_v1_chr12_-_122751044 NM_022916	-187043	-	TSC_hg19_v1_chr12_-_122985404 BC065918	47329	-	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	47420	-	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	73410	-	X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##AF045652|CLIP1|6249|CAP-GLY domain containing linker protein 1##AF045653|CLIP1|6249|CAP-GLY domain containing linker protein 1##AY563000|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_022916|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2	1.039132	0.0	
chr7	122408960	122409109	reg1001614.p1	10.564	+	AK058116 AK098654 BC029264 NM_198085	-66042	-	BC022038 AF447589 NM_139175 AK098524	-69837	-	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-464445	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	117464	-	TSC_hg19_v1_chr7_-_122526793 NM_001009571 NM_001167940 NM_017954	117762	-	BC095524 NM_016945	226719	-	AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2##NM_001009571|CADPS2|93664|Ca++-dependent secretion activator 2##NM_001167940|CADPS2|93664|Ca++-dependent secretion activator 2##NM_017954|CADPS2|93664|Ca++-dependent secretion activator 2##BC095524|TAS2R16|50833|taste receptor, type 2, member 16##NM_016945|TAS2R16|50833|taste receptor, type 2, member 16	0.989152	0.0	denovo_WM_7:-15:0.767
chr19	14143341	14143521	reg1001484.p2	10.560	+	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-784	+	AF265242 AY358876 TSC_hg19_v1_chr19_+_14142572	-846	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	-917	+	NM_001145028	26539	-	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	57845	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	81623	-	BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF265242|IL27RA|9466|interleukin 27 receptor, alpha##AY358876|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha##NM_001145028|PALM3|342979|paralemmin 3##AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	1.041368	0.0	
chr3	140432797	140432977	reg1001423.p2	10.558	+	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	-35928	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-778635	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-778869	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	227880	+	TSC_hg19_v1_chr3_+_140770412 BC051354	337591	+	AF403029 BC008324 NM_080862 AK056367	337870	+	NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AF403029|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##BC008324|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##NM_080862|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AK056367|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.99707	0.0	denovo_WM_7:14:0.438	denovo_WM_7:15:0.438
chr11	46324496	46324654	reg1002137.p1	10.557	+	TSC_hg19_v1_chr11_+_46299596 AB463458 CU680776 DQ895809 EU176365	-24952	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	-25015	+	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	-25370	+	AK124594 NM_201532	29879	+	NM_201533 TSC_hg19_v1_chr11_+_46366981 AK303322	42323	+	TSC_hg19_v1_chr11_+_46366983 AK123378 BX648433	42409	+	DQ895809|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##EU176365|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AK124594|DGKZ|8525|diacylglycerol kinase, zeta##NM_201532|DGKZ|8525|diacylglycerol kinase, zeta##NM_201533|DGKZ|8525|diacylglycerol kinase, zeta##AK303322|DGKZ|8525|diacylglycerol kinase, zeta##AK123378|DGKZ|8525|diacylglycerol kinase, zeta##BX648433|DGKZ|8525|diacylglycerol kinase, zeta	0.991402	0.0	denovo_WM_7:-34:0.894
chr10	114135877	114136021	reg1001723.p1	10.554	+	AK222782 TSC_hg19_v1_chr10_+_114135962 NM_016234 AK024932	0	+	TSC_hg19_v1_chr10_+_114135025 NM_203380	-927	+	TSC_hg19_v1_chr10_+_114133873 NM_203379	-2046	+	TSC_hg19_v1_chr10_+_114135984 AK223288 BC007985 AY358520	39	+	TSC_hg19_v1_chr10_+_114136043 AB033899	130	+	TSC_hg19_v1_chr10_+_114154539 AM262166 DQ893266 DQ896596	18664	+	AK222782|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_016234|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK024932|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_203380|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_203379|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK223288|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##BC007985|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AY358520|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AB033899|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AM262166|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##DQ893266|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##DQ896596|ACSL5|51703|acyl-CoA synthetase long-chain family member 5	0.661128	0.0	denovo_WM_7:3:0.510
chr10	121463712	121463889	reg1000582.p1	10.554	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-52664	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-52725	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-52747	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	21738	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	21814	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	21905	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	1.990387	0.0	denovo_WM_7:-25:0.495	denovo_WM_7:-26:0.495
chr20	53734350	53734471	reg1001935.p2	10.554	+	TSC_hg19_v1_chr20_+_53092131 BC008992 NM_018431 AF132732 AK313222	-642196	+	TSC_hg19_v1_chr20_+_52824630 AK312059 BC010953 U41816	-909773	+	TSC_hg19_v1_chr20_+_52824396 NM_002623	-909963	+	NM_080617	845601	-	BC069105 NM_019888 AB529241 AY227893 BC069591 BC069599 BC096702 BC096737 BC098169 BC098351 CU686926	1089377	+	NM_080821 TSC_hg19_v1_chr20_+_54934029 AK314768 AJ311123 BC017725 AK075565	1199614	+	BC008992|DOK5|55816|docking protein 5##NM_018431|DOK5|55816|docking protein 5##AF132732|DOK5|55816|docking protein 5##AK313222|DOK5|55816|docking protein 5##AK312059|PFDN4|5203|prefoldin subunit 4##BC010953|PFDN4|5203|prefoldin subunit 4##U41816|PFDN4|5203|prefoldin subunit 4##NM_002623|PFDN4|5203|prefoldin subunit 4##NM_080617|CBLN4|140689|cerebellin 4 precursor##BC069105|MC3R|4159|melanocortin 3 receptor##NM_019888|MC3R|4159|melanocortin 3 receptor##AY227893|MC3R|4159|melanocortin 3 receptor##BC069591|MC3R|4159|melanocortin 3 receptor##BC069599|MC3R|4159|melanocortin 3 receptor##BC096702|MC3R|4159|melanocortin 3 receptor##BC096737|MC3R|4159|melanocortin 3 receptor##BC098169|MC3R|4159|melanocortin 3 receptor##BC098351|MC3R|4159|melanocortin 3 receptor##NM_080821|FAM210B|116151|family with sequence similarity 210, member B##AK314768|FAM210B|116151|family with sequence similarity 210, member B##AJ311123|FAM210B|116151|family with sequence similarity 210, member B##BC017725|FAM210B|116151|family with sequence similarity 210, member B##AK075565|FAM210B|116151|family with sequence similarity 210, member B	0.978393	0.0	denovo_WM_7:23:0.311	denovo_WM_7:24:0.311	denovo_WM_7:25:0.311
chr16	10832796	10832900	reg1001551.p2	10.553	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-44083	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-158358	-	NM_024997 BC137079 BC144468	-310108	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	4856	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	79700	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	138264	+	HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator	0.99931	0.040164	denovo_WM_7:41:0.656	denovo_WM_7:42:0.254
chrY	1521734	1521879	reg1002360.p1	10.553	+	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-5	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-60837	-	BC035407 NM_002183	-116298	+	AK301844 NM_001173473	845	-	BC043610 GQ280263 NM_178129 AK126147	84232	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	138723	+	BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A	0.0	0.0	
chr10	93971151	93971320	reg1001797.p1	10.546	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-287543	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-287719	+	AK315427 BC025966 AK075410 NM_152429	-302015	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	31784	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	79601	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	79819	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.993792	0.0	denovo_WM_7:66:0.248	denovo_WM_7:67:0.248	denovo_WM_7:68:0.248	denovo_WM_7:69:0.248
chr2	112463622	112463774	reg1002047.p1	10.543	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-585211	+	AK300513 NM_001142807 BC022268	-973519	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-1027876	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	177928	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	178063	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	192487	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.986246	0.0	denovo_WM_7:23:0.975
chr18	21103465	21103645	reg1001582.p1	10.542	+	TSC_hg19_v1_chr18_+_21083474 NM_013326 AK057192 AK295246 AK296230 AK294169 BC008305 BC002950	-20081	+	TSC_hg19_v1_chr18_+_21033285 AF013591	-70251	+	TSC_hg19_v1_chr18_+_21033263 BC039729	-70285	+	TSC_hg19_v1_chr18_-_21166428 BC063302 AF002020	62853	-	TSC_hg19_v1_chr18_-_21166458 AK295715 NM_000271	62955	-	TSC_hg19_v1_chr18_-_21242592 CU688952 AK313667 AK057782 BC030622 NM_173505	139165	-	NM_013326|C18orf8|29919|chromosome 18 open reading frame 8##AK057192|C18orf8|29919|chromosome 18 open reading frame 8##AK295246|C18orf8|29919|chromosome 18 open reading frame 8##AK296230|C18orf8|29919|chromosome 18 open reading frame 8##AK294169|C18orf8|29919|chromosome 18 open reading frame 8##BC008305|C18orf8|29919|chromosome 18 open reading frame 8##BC002950|C18orf8|29919|chromosome 18 open reading frame 8##AF013591|RIOK3|8780|RIO kinase 3 (yeast)##BC039729|RIOK3|8780|RIO kinase 3 (yeast)##BC063302|NPC1|4864|Niemann-Pick disease, type C1##AF002020|NPC1|4864|Niemann-Pick disease, type C1##AK295715|NPC1|4864|Niemann-Pick disease, type C1##NM_000271|NPC1|4864|Niemann-Pick disease, type C1##AK313667|ANKRD29|147463|ankyrin repeat domain 29##AK057782|ANKRD29|147463|ankyrin repeat domain 29##BC030622|ANKRD29|147463|ankyrin repeat domain 29##NM_173505|ANKRD29|147463|ankyrin repeat domain 29	1.992603	0.0	denovo_WM_7:-23:0.685	denovo_WM_7:-38:0.409	denovo_WM_7:-39:0.422
chr2	156269298	156269442	reg1001435.p1	10.542	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-714181	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-1540926	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1934119	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	917320	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	919793	-	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	1022588	+	NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.997107	0.0	denovo_WM_7:18:0.658	denovo_WM_7:19:0.255
chr17	30250977	30251155	reg1001938.p2	10.541	+	TSC_hg19_v1_chr17_-_30228769 AK299806	-22302	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	-22335	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	-22400	-	TSC_hg19_v1_chr17_+_30264046 NM_015355	12977	+	TSC_hg19_v1_chr17_+_30264057 AK290014	12991	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	13009	+	AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)	1.976712	0.0	denovo_WM_7:-38:0.984	denovo_WM_7:66:0.789
chr17	35801665	35801833	reg1001845.p1	10.540	+	AK022767 NM_001488 NM_133439	-34438	+	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	-34787	+	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	-34874	-	NM_007026 TSC_hg19_v1_chr17_+_35849956	48211	+	TSC_hg19_v1_chr17_+_35849996 AK314894	48240	+	TSC_hg19_v1_chr17_+_35849998 BC001894 AF038844 BC000370 BC004448	48266	+	AK022767|TADA2A|6871|transcriptional adaptor 2A##NM_001488|TADA2A|6871|transcriptional adaptor 2A##NM_133439|TADA2A|6871|transcriptional adaptor 2A##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_007026|DUSP14|11072|dual specificity phosphatase 14##AK314894|DUSP14|11072|dual specificity phosphatase 14##BC001894|DUSP14|11072|dual specificity phosphatase 14##AF038844|DUSP14|11072|dual specificity phosphatase 14##BC000370|DUSP14|11072|dual specificity phosphatase 14##BC004448|DUSP14|11072|dual specificity phosphatase 14	0.99226	0.0	denovo_WM_7:28:0.837
chr9	131580458	131580638	reg1001470.p2	10.540	+	TSC_hg19_v1_chr9_+_131549578 AK289777 BC150311 AK123828 BC014898 BC132817 BC136509 AK001605 BC140080 BC143010 HQ258408 AB449899	-30952	+	NM_018201 TSC_hg19_v1_chr9_+_131549531	-31028	+	TSC_hg19_v1_chr9_-_131534207 BC052563 NM_006336	-46290	-	TSC_hg19_v1_chr9_+_131580758 BC016351 NM_004435 X79444 BC004922 AB590755	291	+	CU687792 BC010579 BC021273 BC046133 TSC_hg19_v1_chr9_-_131592067 BC056890 BC033677 BC063644	11517	-	AF161459 TSC_hg19_v1_chr9_-_131592073	11524	-	AK289777|TBC1D13|54662|TBC1 domain family, member 13##BC150311|TBC1D13|54662|TBC1 domain family, member 13##AK123828|TBC1D13|54662|TBC1 domain family, member 13##BC014898|TBC1D13|54662|TBC1 domain family, member 13##BC132817|TBC1D13|54662|TBC1 domain family, member 13##BC136509|TBC1D13|54662|TBC1 domain family, member 13##AK001605|TBC1D13|54662|TBC1 domain family, member 13##BC140080|TBC1D13|54662|TBC1 domain family, member 13##BC143010|TBC1D13|54662|TBC1 domain family, member 13##HQ258408|TBC1D13|54662|TBC1 domain family, member 13##AB449899|TBC1D13|54662|TBC1 domain family, member 13##NM_018201|TBC1D13|54662|TBC1 domain family, member 13##BC052563|ZER1|10444|zer-1 homolog (C. elegans)##NM_006336|ZER1|10444|zer-1 homolog (C. elegans)##BC016351|ENDOG|2021|endonuclease G##NM_004435|ENDOG|2021|endonuclease G##X79444|ENDOG|2021|endonuclease G##BC004922|ENDOG|2021|endonuclease G##BC010579|C9orf114|51490|chromosome 9 open reading frame 114##BC021273|C9orf114|51490|chromosome 9 open reading frame 114##BC046133|C9orf114|51490|chromosome 9 open reading frame 114##BC056890|C9orf114|51490|chromosome 9 open reading frame 114##BC033677|C9orf114|51490|chromosome 9 open reading frame 114##BC063644|C9orf114|51490|chromosome 9 open reading frame 114##AF161459|C9orf114|51490|chromosome 9 open reading frame 114	0.0	0.0	
chr1	214801627	214801764	reg1002097.p1	10.539	+	TSC_hg19_v1_chr1_+_214776585 U30872	-25077	+	TSC_hg19_v1_chr1_+_214776547 NM_016343 U19769 AK307690	-25174	+	TSC_hg19_v1_chr1_-_214724977 NM_005401	-76697	-	NM_001017424	377189	+	NM_001017425 NM_014217 AK294780 AK291483 BC143586 BC101693 BC101695 AF004711 EF165334 AF171068 BC069462 EF165335	454915	+	TSC_hg19_v1_chr1_+_215740717 BC013868 NM_016121 BC094879 BC117188 BC126173 BC143963 HQ258497	939168	+	U30872|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##NM_016343|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##U19769|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##AK307690|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_001017424|KCNK2|3776|potassium channel, subfamily K, member 2##NM_001017425|KCNK2|3776|potassium channel, subfamily K, member 2##NM_014217|KCNK2|3776|potassium channel, subfamily K, member 2##AK294780|KCNK2|3776|potassium channel, subfamily K, member 2##AK291483|KCNK2|3776|potassium channel, subfamily K, member 2##BC143586|KCNK2|3776|potassium channel, subfamily K, member 2##BC101693|KCNK2|3776|potassium channel, subfamily K, member 2##BC101695|KCNK2|3776|potassium channel, subfamily K, member 2##AF004711|KCNK2|3776|potassium channel, subfamily K, member 2##EF165334|KCNK2|3776|potassium channel, subfamily K, member 2##AF171068|KCNK2|3776|potassium channel, subfamily K, member 2##BC069462|KCNK2|3776|potassium channel, subfamily K, member 2##EF165335|KCNK2|3776|potassium channel, subfamily K, member 2##BC013868|KCTD3|51133|potassium channel tetramerisation domain containing 3##NM_016121|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC094879|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC117188|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC126173|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC143963|KCTD3|51133|potassium channel tetramerisation domain containing 3##HQ258497|KCTD3|51133|potassium channel tetramerisation domain containing 3	1.642938	0.994491	CTCF.p2:-12:0.994	denovo_WM_7:37:0.963	denovo_WM_7:91:0.619
chr12	40596032	40596200	reg1001538.p1	10.539	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-96244	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-96427	-	BC038754 NM_001031748 BC048120 AK097445	-576121	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	22743	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	490166	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	986092	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.211918	0.0	denovo_WM_7:73:0.212
chr11	3887607	3887700	reg1001333.p1	10.535	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-10724	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-25454	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-25498	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	228336	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	228413	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	228506	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.997902	0.0	denovo_WM_7:14:0.449	denovo_WM_7:15:0.449
chr12	113443705	113443854	reg1002376.p1	10.534	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	-27439	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-67439	+	TSC_hg19_v1_chr12_+_113376245 AK000608 NM_006187 BC113746 BC012015 AK292949	-67529	+	NM_004416 BC048216	51911	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	129633	-	AF086713 AB208935 AK294350 NM_001193520 NM_004658	130252	-	NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AK000608|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##NM_006187|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##BC113746|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##BC012015|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AK292949|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	2.074159	0.0	denovo_WM_7:-30:0.387	denovo_WM_7:-31:0.290	denovo_WM_7:-47:0.295	denovo_WM_7:-48:0.391
chr12	81157735	81157900	reg1002079.p1	10.534	+	TSC_hg19_v1_chr12_+_81110690 NM_005593 BC069373 X14894 AB528948 BT019399	-47052	+	NM_002469 AK313287 X52011 BC017834 AB587443 CU676084 DQ893248 DQ896577 CR407641 CR541763	-56365	+	NM_001145026	-319692	+	TSC_hg19_v1_chr12_-_81331470 AK309256	173650	-	TSC_hg19_v1_chr12_-_81331487 AB528898 CR407680 BC099921 AK315321 BC046926 BC062332 BC118609 BC122561 AF087693 AF173081 NM_004664	173773	-	TSC_hg19_v1_chr12_+_81471857 BC009317 BC015769 NM_024560 AK025616 AX764482	314041	+	NM_005593|MYF5|4617|myogenic factor 5##BC069373|MYF5|4617|myogenic factor 5##X14894|MYF5|4617|myogenic factor 5##BT019399|MYF5|4617|myogenic factor 5##NM_002469|MYF6|4618|myogenic factor 6 (herculin)##AK313287|MYF6|4618|myogenic factor 6 (herculin)##X52011|MYF6|4618|myogenic factor 6 (herculin)##BC017834|MYF6|4618|myogenic factor 6 (herculin)##DQ893248|MYF6|4618|myogenic factor 6 (herculin)##DQ896577|MYF6|4618|myogenic factor 6 (herculin)##CR407641|MYF6|4618|myogenic factor 6 (herculin)##CR541763|MYF6|4618|myogenic factor 6 (herculin)##NM_001145026|PTPRQ|374462|protein tyrosine phosphatase, receptor type, Q##AK309256|LIN7A|8825|lin-7 homolog A (C. elegans)##CR407680|LIN7A|8825|lin-7 homolog A (C. elegans)##BC099921|LIN7A|8825|lin-7 homolog A (C. elegans)##AK315321|LIN7A|8825|lin-7 homolog A (C. elegans)##BC046926|LIN7A|8825|lin-7 homolog A (C. elegans)##BC062332|LIN7A|8825|lin-7 homolog A (C. elegans)##BC118609|LIN7A|8825|lin-7 homolog A (C. elegans)##BC122561|LIN7A|8825|lin-7 homolog A (C. elegans)##AF087693|LIN7A|8825|lin-7 homolog A (C. elegans)##AF173081|LIN7A|8825|lin-7 homolog A (C. elegans)##NM_004664|LIN7A|8825|lin-7 homolog A (C. elegans)##BC009317|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##BC015769|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##NM_024560|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AK025616|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AX764482|ACSS3|79611|acyl-CoA synthetase short-chain family member 3	0.452246	0.347369	denovo_WM_7:25:0.280	CTCF.p2:-42:0.331
chr5	157287840	157288020	reg1001933.p1	10.529	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1840	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-103550	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-117190	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	1238527	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	1238812	-	AK304228 NM_001199382	1346718	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	1.978441	0.0	denovo_WM_7:-38:0.816	denovo_WM_7:-55:0.981
chrX	1571734	1571879	reg1002359.p1	10.525	+	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-5	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-60837	-	BC035407 NM_002183	-116298	+	AK301844 NM_001173473	845	-	BC043610 GQ280263 NM_178129 AK126147	84232	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	138723	+	BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A	0.0	0.0	
chr17	7039677	7039784	reg1001437.p2	10.524	+	X55283 TSC_hg19_v1_chr17_-_7018083 BC017251 NM_001181 NM_001201352 NM_080912 NM_080913 AK310123 AK303787	-21560	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	-21741	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	-22137	-	BC032130 TSC_hg19_v1_chr17_-_7082568	42834	-	M10058 AB070933 TSC_hg19_v1_chr17_-_7082680 AK308375 AK124286 NM_001197216 NM_001671	43038	-	TSC_hg19_v1_chr17_-_7106561 BC040533	66864	-	X55283|ASGR2|433|asialoglycoprotein receptor 2##BC017251|ASGR2|433|asialoglycoprotein receptor 2##NM_001181|ASGR2|433|asialoglycoprotein receptor 2##NM_001201352|ASGR2|433|asialoglycoprotein receptor 2##NM_080912|ASGR2|433|asialoglycoprotein receptor 2##NM_080913|ASGR2|433|asialoglycoprotein receptor 2##AK310123|ASGR2|433|asialoglycoprotein receptor 2##AK303787|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##BC032130|ASGR1|432|asialoglycoprotein receptor 1##M10058|ASGR1|432|asialoglycoprotein receptor 1##AB070933|ASGR1|432|asialoglycoprotein receptor 1##AK308375|ASGR1|432|asialoglycoprotein receptor 1##AK124286|ASGR1|432|asialoglycoprotein receptor 1##NM_001197216|ASGR1|432|asialoglycoprotein receptor 1##NM_001671|ASGR1|432|asialoglycoprotein receptor 1##BC040533|DLG4|1742|discs, large homolog 4 (Drosophila)	0.961111	0.240072	CTCF.p2:17:0.240	denovo_WM_7:-24:0.820
chr11	26306536	26306687	reg1002308.p1	10.520	+	AK127695 NM_001009909 NM_001252008 NM_001252010 TSC_hg19_v1_chr11_+_24518540 AY164460 AL832641 AY358386 BC132829 BC144177 AK309077 BC151234 HQ258382	-1787962	+	NM_001195637	-3424640	-	TSC_hg19_v1_chr11_-_22851382 AL833119 AF527534 NM_148893	-3455266	-	NM_031418 AK302659	47119	+	AK128337 AJ417818 AJ507429 BC058007 AY358668 BC020912 NM_001135091 NM_001135092 NM_145650	287129	-	BC049207 NM_178498	436948	-	AK127695|LUZP2|338645|leucine zipper protein 2##NM_001009909|LUZP2|338645|leucine zipper protein 2##NM_001252008|LUZP2|338645|leucine zipper protein 2##NM_001252010|LUZP2|338645|leucine zipper protein 2##AY164460|LUZP2|338645|leucine zipper protein 2##AL832641|LUZP2|338645|leucine zipper protein 2##AY358386|LUZP2|338645|leucine zipper protein 2##BC132829|LUZP2|338645|leucine zipper protein 2##BC144177|LUZP2|338645|leucine zipper protein 2##AK309077|LUZP2|338645|leucine zipper protein 2##BC151234|LUZP2|338645|leucine zipper protein 2##HQ258382|LUZP2|338645|leucine zipper protein 2##NM_001195637|LOC100500938|100500938|uncharacterized LOC100500938##AL833119|SVIP|258010|small VCP/p97-interacting protein##AF527534|SVIP|258010|small VCP/p97-interacting protein##NM_148893|SVIP|258010|small VCP/p97-interacting protein##NM_031418|ANO3|63982|anoctamin 3##AK302659|ANO3|63982|anoctamin 3##AK128337|MUC15|143662|mucin 15, cell surface associated##AJ417818|MUC15|143662|mucin 15, cell surface associated##AJ507429|MUC15|143662|mucin 15, cell surface associated##BC058007|MUC15|143662|mucin 15, cell surface associated##AY358668|MUC15|143662|mucin 15, cell surface associated##BC020912|MUC15|143662|mucin 15, cell surface associated##NM_001135091|MUC15|143662|mucin 15, cell surface associated##NM_001135092|MUC15|143662|mucin 15, cell surface associated##NM_145650|MUC15|143662|mucin 15, cell surface associated##BC049207|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12##NM_178498|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12	0.256524	0.969536	CTCF.p2:-5:0.970	denovo_WM_7:40:0.221
chr8	74779905	74780085	reg1001847.p1	10.518	+	AK290141 NM_001164384	-120053	-	TSC_hg19_v1_chr8_-_74659707 AK307841 AK293729	-120299	-	TSC_hg19_v1_chr8_-_74659103 AK294466 CR627442 NM_001164380 NM_001164381 NM_001164382 NM_001164383 NM_001164385 NM_014393	-120837	-	TSC_hg19_v1_chr8_-_74791061 AK001873 AK021735 BC010900 EU446497 BX538145	11065	-	TSC_hg19_v1_chr8_-_74791074 BX648427 AK225554	11079	-	TSC_hg19_v1_chr8_-_74791084 AY948289	11086	-	AK290141|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164384|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK307841|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK293729|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK294466|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##CR627442|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164380|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164381|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164382|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164383|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164385|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_014393|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK001873|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AK021735|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BC010900|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##EU446497|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BX538145|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BX648427|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AK225554|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AY948289|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)	0.990013	0.0	denovo_WM_7:-35:0.243	denovo_WM_7:-36:0.243	denovo_WM_7:-37:0.243	denovo_WM_7:-38:0.243
chr16	10870220	10870374	reg1001904.p5	10.516	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-32593	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-81532	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-195807	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	42251	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	100815	+	BC071683 TSC_hg19_v1_chr16_-_11036171	165869	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	1.02289	0.0	denovo_WM_7:-50:0.315	denovo_WM_7:-51:0.582
chr16	84664607	84664756	reg1001997.p1	10.511	+	TSC_hg19_v1_chr16_-_84651682 L54057 BC053682 BC010039 NM_021149 AK315675 BC016702 BC042970	-13021	-	AB590839 BT006968 EU832743 TSC_hg19_v1_chr16_-_84651627 BC010884	-13105	-	BC023251 TSC_hg19_v1_chr16_-_84538263 AB046829 BC060844 AK291237 NM_020947 AK300132 AK310887	-126390	-	TSC_hg19_v1_chr16_+_84682127 BC033821 NM_024731 BC032400	17453	+	NM_005153 TSC_hg19_v1_chr16_+_84733587 BC000263	68893	+	TSC_hg19_v1_chr16_+_84733603 AK315570 CR749515	68919	+	L54057|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC053682|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010039|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_021149|COTL1|23406|coactosin-like 1 (Dictyostelium)##AK315675|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC016702|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC042970|COTL1|23406|coactosin-like 1 (Dictyostelium)##BT006968|COTL1|23406|coactosin-like 1 (Dictyostelium)##EU832743|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010884|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC023251|KIAA1609|57707|KIAA1609##AB046829|KIAA1609|57707|KIAA1609##BC060844|KIAA1609|57707|KIAA1609##AK291237|KIAA1609|57707|KIAA1609##NM_020947|KIAA1609|57707|KIAA1609##AK300132|KIAA1609|57707|KIAA1609##AK310887|KIAA1609|57707|KIAA1609##BC033821|KLHL36|79786|kelch-like 36 (Drosophila)##NM_024731|KLHL36|79786|kelch-like 36 (Drosophila)##BC032400|KLHL36|79786|kelch-like 36 (Drosophila)##NM_005153|USP10|9100|ubiquitin specific peptidase 10##BC000263|USP10|9100|ubiquitin specific peptidase 10##AK315570|USP10|9100|ubiquitin specific peptidase 10##CR749515|USP10|9100|ubiquitin specific peptidase 10	1.011776	0.0	
chr11	67213909	67214047	reg1001378.p2	10.509	+	NM_001018070	-2687	-	TSC_hg19_v1_chr11_-_67210953 AB209579 AK309267 AK000860 NM_020441	-3011	-	TSC_hg19_v1_chr11_-_67210939 BC006449 AK315399 AK295782	-3049	-	AY569571 BC119779 BC122869 NM_206997	6221	-	AY039217 NM_145200	8839	+	AK310743 TSC_hg19_v1_chr11_-_67236717 AK296988 AY007143 BC013883 BC051854 BC125134 AK303342 NM_001078650 NM_001078651 NM_025124 AK025402	22723	-	NM_001018070|CORO1B|57175|coronin, actin binding protein, 1B##AK309267|CORO1B|57175|coronin, actin binding protein, 1B##AK000860|CORO1B|57175|coronin, actin binding protein, 1B##NM_020441|CORO1B|57175|coronin, actin binding protein, 1B##BC006449|CORO1B|57175|coronin, actin binding protein, 1B##AK315399|CORO1B|57175|coronin, actin binding protein, 1B##AK295782|CORO1B|57175|coronin, actin binding protein, 1B##AY569571|GPR152|390212|G protein-coupled receptor 152##BC119779|GPR152|390212|G protein-coupled receptor 152##BC122869|GPR152|390212|G protein-coupled receptor 152##NM_206997|GPR152|390212|G protein-coupled receptor 152##AY039217|CABP4|57010|calcium binding protein 4##NM_145200|CABP4|57010|calcium binding protein 4##AK310743|TMEM134|80194|transmembrane protein 134##AK296988|TMEM134|80194|transmembrane protein 134##AY007143|TMEM134|80194|transmembrane protein 134##BC013883|TMEM134|80194|transmembrane protein 134##BC051854|TMEM134|80194|transmembrane protein 134##BC125134|TMEM134|80194|transmembrane protein 134##AK303342|TMEM134|80194|transmembrane protein 134##NM_001078650|TMEM134|80194|transmembrane protein 134##NM_001078651|TMEM134|80194|transmembrane protein 134##NM_025124|TMEM134|80194|transmembrane protein 134##AK025402|TMEM134|80194|transmembrane protein 134	1.991194	0.0	denovo_WM_7:-87:0.450	denovo_WM_7:-88:0.450
chr12	109106311	109106428	reg1001402.p1	10.504	+	TSC_hg19_v1_chr12_-_109027671 AK127638 AK298738 AK098315 NM_003006	-78707	-	TSC_hg19_v1_chr12_-_109027639 AK300057 AK290395 BC029782	-78736	-	AK225644 U02297 AK295238 TSC_hg19_v1_chr12_-_109027584	-78795	-	TSC_hg19_v1_chr12_-_109125268 AL162070 AK297463	18894	-	TSC_hg19_v1_chr12_-_109125284 BC002342 AB209909	18911	-	TSC_hg19_v1_chr12_-_109125295 AK023205 AK223073 AK304839 AK311315 AK316065 AB030656 NM_014325	18923	-	AK127638|SELPLG|6404|selectin P ligand##AK098315|SELPLG|6404|selectin P ligand##NM_003006|SELPLG|6404|selectin P ligand##AK290395|SELPLG|6404|selectin P ligand##BC029782|SELPLG|6404|selectin P ligand##AK225644|SELPLG|6404|selectin P ligand##U02297|SELPLG|6404|selectin P ligand##AK295238|SELPLG|6404|selectin P ligand##AL162070|CORO1C|23603|coronin, actin binding protein, 1C##AK297463|CORO1C|23603|coronin, actin binding protein, 1C##BC002342|CORO1C|23603|coronin, actin binding protein, 1C##AB209909|CORO1C|23603|coronin, actin binding protein, 1C##AK023205|CORO1C|23603|coronin, actin binding protein, 1C##AK223073|CORO1C|23603|coronin, actin binding protein, 1C##AK304839|CORO1C|23603|coronin, actin binding protein, 1C##AK311315|CORO1C|23603|coronin, actin binding protein, 1C##AK316065|CORO1C|23603|coronin, actin binding protein, 1C##AB030656|CORO1C|23603|coronin, actin binding protein, 1C##NM_014325|CORO1C|23603|coronin, actin binding protein, 1C	0.998831	0.0	
chr6	157998913	157999092	reg1001952.p1	10.499	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-196463	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-253785	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-254418	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	245287	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	245372	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	403885	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	1.033541	0.0	denovo_WM_7:78:0.990
chr1	220263188	220263368	reg1000450.p2	10.497	+	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	-104	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	-157	-	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-43342	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	4174	+	TSC_hg19_v1_chr1_+_220267495 AY952883 D28500 AK291432 BC040376	4328	+	AB020646 BC146760 TSC_hg19_v1_chr1_-_220445745 BC050630 AF004828 BC131573	182434	-	AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AY952883|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##D28500|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AK291432|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC040376|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AB020646|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC146760|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC050630|AURKAPS1|6791|aurora kinase A pseudogene 1##AF004828|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC131573|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)	0.954669	0.0	denovo_WM_7:73:0.629
chr7	99680168	99680322	reg1001924.p3	10.497	+	BC041695 TSC_hg19_v1_chr7_-_99680201	-58	-	TSC_hg19_v1_chr7_-_99679347 BC011887 BC025265 BC013603 AK297625 AF193057 AF217988 AK315479 AK091984 AX747291 NM_017715 NM_032924	-918	-	NM_145914 TSC_hg19_v1_chr7_+_99647416 CR749301 BC047309 AK301871	-32815	+	AK309719 TSC_hg19_v1_chr7_-_99680369	123	-	TSC_hg19_v1_chr7_+_99686591 NM_006833 AK312024	6335	+	AK295237 TSC_hg19_v1_chr7_+_99686604 BC002520	6361	+	BC011887|ZNF3|7551|zinc finger protein 3##BC025265|ZNF3|7551|zinc finger protein 3##BC013603|ZNF3|7551|zinc finger protein 3##AK297625|ZNF3|7551|zinc finger protein 3##AF193057|ZNF3|7551|zinc finger protein 3##AF217988|ZNF3|7551|zinc finger protein 3##AK315479|ZNF3|7551|zinc finger protein 3##AK091984|ZNF3|7551|zinc finger protein 3##NM_017715|ZNF3|7551|zinc finger protein 3##NM_032924|ZNF3|7551|zinc finger protein 3##NM_145914|ZSCAN21|7589|zinc finger and SCAN domain containing 21##CR749301|ZSCAN21|7589|zinc finger and SCAN domain containing 21##BC047309|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK301871|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK309719|ZNF3|7551|zinc finger protein 3##NM_006833|COPS6|10980|COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)##AK312024|COPS6|10980|COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)##AK295237|COPS6|10980|COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)##BC002520|COPS6|10980|COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)	0.997645	0.0	denovo_WM_7:-31:0.951
chr17	73319236	73319398	reg1001814.p1	10.494	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-33788	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-33845	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-52003	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	70460	-	AK091010 TSC_hg19_v1_chr17_-_73401721	82327	-	TSC_hg19_v1_chr17_-_73401738 BC000631	82417	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	0.999042	0.786585	CTCF.p2:8:0.787
chr5	10505786	10505918	reg1001515.p1	10.494	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-63700	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-63849	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-151844	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	58590	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	255407	-	TSC_hg19_v1_chr5_-_10761341 BC002726	255490	-	AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein	0.998884	0.0	denovo_WM_7:7:0.418	denovo_WM_7:8:0.418
chr1	203349878	203350028	reg1001887.p1	10.493	+	TSC_hg19_v1_chr1_-_203320290 NM_002023	-29665	-	AK172740 TSC_hg19_v1_chr1_-_203320256	-29692	-	TSC_hg19_v1_chr1_-_203320217 AK291632 AK303866 AK092899 AX747797 BC035281	-29744	-	NM_002725 NM_201348 TSC_hg19_v1_chr1_+_203444937	94956	+	U29089 BC032498 TSC_hg19_v1_chr1_+_203444965	95007	+	AJ133790 AY077681 NM_014359 AF161702	113328	+	NM_002023|FMOD|2331|fibromodulin##AK291632|FMOD|2331|fibromodulin##AK303866|FMOD|2331|fibromodulin##AK092899|FMOD|2331|fibromodulin##BC035281|FMOD|2331|fibromodulin##NM_002725|PRELP|5549|proline/arginine-rich end leucine-rich repeat protein##NM_201348|PRELP|5549|proline/arginine-rich end leucine-rich repeat protein##U29089|PRELP|5549|proline/arginine-rich end leucine-rich repeat protein##BC032498|PRELP|5549|proline/arginine-rich end leucine-rich repeat protein##AJ133790|OPTC|26254|opticin##AY077681|OPTC|26254|opticin##NM_014359|OPTC|26254|opticin##AF161702|OPTC|26254|opticin	0.997547	0.0	
chr1	155561670	155561813	reg1001892.p1	10.490	+	TSC_hg19_v1_chr1_+_155533036 BC104640 BC065229 BC009847	-28707	+	TSC_hg19_v1_chr1_-_155532562 AK307595	-29160	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	-29374	-	AK295146 AK290610 NM_018116 BX537684 BC002535 AK001366 AK056128 AK092950 AK297140 AX747823 AK222863 CR749791 AB587518 AK309573 AM393003 CU678024 EU832296 EU832380 AF272833	18289	+	TSC_hg19_v1_chr1_-_155649249 CU674814	87525	-	AK303386 NM_001198899	87867	-	BC104640|LOC645676|645676|uncharacterized LOC645676##BC065229|LOC645676|645676|uncharacterized LOC645676##BC009847|LOC645676|645676|uncharacterized LOC645676##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK295146|MSTO1|55154|misato homolog 1 (Drosophila)##AK290610|MSTO1|55154|misato homolog 1 (Drosophila)##NM_018116|MSTO1|55154|misato homolog 1 (Drosophila)##BX537684|MSTO1|55154|misato homolog 1 (Drosophila)##BC002535|MSTO1|55154|misato homolog 1 (Drosophila)##AK001366|MSTO1|55154|misato homolog 1 (Drosophila)##AK056128|MSTO1|55154|misato homolog 1 (Drosophila)##AK092950|MSTO1|55154|misato homolog 1 (Drosophila)##AK297140|MSTO1|55154|misato homolog 1 (Drosophila)##AK222863|MSTO1|55154|misato homolog 1 (Drosophila)##CR749791|MSTO1|55154|misato homolog 1 (Drosophila)##AK309573|MSTO1|55154|misato homolog 1 (Drosophila)##AM393003|MSTO1|55154|misato homolog 1 (Drosophila)##EU832296|MSTO1|55154|misato homolog 1 (Drosophila)##EU832380|MSTO1|55154|misato homolog 1 (Drosophila)##AF272833|MSTO1|55154|misato homolog 1 (Drosophila)##AK303386|YY1AP1|55249|YY1 associated protein 1##NM_001198899|YY1AP1|55249|YY1 associated protein 1	0.0	0.941017	CTCF.p2:45:0.941
chr14	60432574	60432751	reg1001921.p3	10.490	+	AB587373 TSC_hg19_v1_chr14_-_60337495 BC111694 L10333 BC090862 BC068510 NM_021136	-95209	-	AK290534 NM_206852 TSC_hg19_v1_chr14_-_60097533	-335129	-	TSC_hg19_v1_chr14_-_60097342 BC000314 BC003003 AK297492	-335318	-	NM_022495 TSC_hg19_v1_chr14_+_60558640 AK095489	126165	+	AY359031 TSC_hg19_v1_chr14_-_60632031 BC000637	199370	-	TSC_hg19_v1_chr14_-_60632103 BC007337 AF151844 AK313285 AL117420 NM_016029	199472	-	BC111694|RTN1|6252|reticulon 1##L10333|RTN1|6252|reticulon 1##BC090862|RTN1|6252|reticulon 1##BC068510|RTN1|6252|reticulon 1##NM_021136|RTN1|6252|reticulon 1##AK290534|RTN1|6252|reticulon 1##NM_206852|RTN1|6252|reticulon 1##BC000314|RTN1|6252|reticulon 1##BC003003|RTN1|6252|reticulon 1##AK297492|RTN1|6252|reticulon 1##NM_022495|C14orf135|64430|chromosome 14 open reading frame 135##AK095489|C14orf135|64430|chromosome 14 open reading frame 135##AY359031|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##BC000637|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##BC007337|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AF151844|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AK313285|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AL117420|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##NM_016029|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7	1.985487	0.0	
chr10	63703462	63703627	reg1001708.p1	10.487	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-42113	+	NM_032199	-42532	+	BC041932 NM_173554	-280826	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	105552	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	324995	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	430499	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	1.658705	0.033745	denovo_WM_7:-36:0.883	denovo_WM_7:83:0.453
chr20	56169441	56169576	reg1001349.p1	10.486	+	NM_002591 AK290802 TSC_hg19_v1_chr20_+_56136165 AK300072 BC023978 BX648510 L05144	-33351	+	BC130486 AF336042 DQ778111 DQ778124 DQ778125 DQ778126 DQ778127 DQ778128 DQ778129 NM_080618 BC060763 AK313990 AK128070	-69307	-	TSC_hg19_v1_chr20_+_55966453 NM_017495 NM_183425 AF432218	-203051	+	BC131706 AK314062 AK290918 BC028218 AJ300575 AX775973 AX775975 AK122761 NM_001160417 NM_001160418 NM_001160419 NM_030776	26030	-	TSC_hg19_v1_chr20_-_56285017 AF305616 AX775889 NM_020182	115481	-	TSC_hg19_v1_chr20_+_56285236 AK056098	115717	+	NM_002591|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK290802|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK300072|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC023978|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BX648510|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##L05144|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC130486|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF336042|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778111|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778124|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778125|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778126|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778127|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778128|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778129|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_080618|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##BC060763|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK313990|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK128070|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_017495|RBM38|55544|RNA binding motif protein 38##NM_183425|RBM38|55544|RNA binding motif protein 38##AF432218|RBM38|55544|RNA binding motif protein 38##BC131706|ZBP1|81030|Z-DNA binding protein 1##AK314062|ZBP1|81030|Z-DNA binding protein 1##AK290918|ZBP1|81030|Z-DNA binding protein 1##BC028218|ZBP1|81030|Z-DNA binding protein 1##AJ300575|ZBP1|81030|Z-DNA binding protein 1##AX775973|ZBP1|81030|Z-DNA binding protein 1##AX775975|ZBP1|81030|Z-DNA binding protein 1##AK122761|ZBP1|81030|Z-DNA binding protein 1##NM_001160417|ZBP1|81030|Z-DNA binding protein 1##NM_001160418|ZBP1|81030|Z-DNA binding protein 1##NM_001160419|ZBP1|81030|Z-DNA binding protein 1##NM_030776|ZBP1|81030|Z-DNA binding protein 1##AF305616|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_020182|PMEPA1|56937|prostate transmembrane protein, androgen induced 1	0.996901	0.99816	denovo_WM_7:-4:0.913	CTCF.p2:28:0.998
chr5	55278809	55278932	reg1001530.p2	10.485	+	NM_001242636 NM_001242639	-129721	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-131601	+	NM_001166534 AK093439 AX748127	-216145	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	11893	-	AK123389 NM_024669	250315	-	NM_005921	832029	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.99896	0.0	denovo_WM_7:-31:0.314	denovo_WM_7:-32:0.314	denovo_WM_7:-33:0.314
chr14	23769023	23769151	reg1001667.p1	10.484	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-13762	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	-13818	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-116215	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	6957	+	NM_004643	20309	+	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	21587	+	NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1	1.871986	0.932569	CTCF.p2:1:0.933	denovo_WM_7:41:0.231	denovo_WM_7:45:0.432	denovo_WM_7:64:0.215
chr11	66375795	66375910	reg1001585.p1	10.483	+	TSC_hg19_v1_chr11_+_66360672 AY113179 AF002210 NM_005125 BC105016 BC112055 CR541928	-15154	+	CU689898 TSC_hg19_v1_chr11_-_66360516 AK001648 BC034469 NM_018219	-15331	-	DQ893245 AJ007331 TSC_hg19_v1_chr11_-_66336078 AK313657 BC036451 AF136279 BC011682 BC013359 AF088886 NM_003793	-39827	-	NM_001198836 NM_001198837 NM_001198845 NM_001198846 NM_006328 TSC_hg19_v1_chr11_+_66384100 AF315632 AF315633 EU287938 AK222830 AK297907 AK307254 AK021768 AK292805 AF080561 BC000488 BC023619 DQ294957 EU287939 EU446504	8269	+	AB464693 TSC_hg19_v1_chr11_+_66395849	19939	+	NM_001198843 NM_001198844 NM_002896 TSC_hg19_v1_chr11_+_66406176 AK303984 BC021120 AK225071 BC032735	30281	+	AY113179|CCS|9973|copper chaperone for superoxide dismutase##AF002210|CCS|9973|copper chaperone for superoxide dismutase##NM_005125|CCS|9973|copper chaperone for superoxide dismutase##BC105016|CCS|9973|copper chaperone for superoxide dismutase##BC112055|CCS|9973|copper chaperone for superoxide dismutase##CR541928|CCS|9973|copper chaperone for superoxide dismutase##AK001648|CCDC87|55231|coiled-coil domain containing 87##BC034469|CCDC87|55231|coiled-coil domain containing 87##NM_018219|CCDC87|55231|coiled-coil domain containing 87##DQ893245|CTSF|8722|cathepsin F##AJ007331|CTSF|8722|cathepsin F##AK313657|CTSF|8722|cathepsin F##BC036451|CTSF|8722|cathepsin F##AF136279|CTSF|8722|cathepsin F##BC011682|CTSF|8722|cathepsin F##BC013359|CTSF|8722|cathepsin F##AF088886|CTSF|8722|cathepsin F##NM_003793|CTSF|8722|cathepsin F##NM_001198836|RBM14|10432|RNA binding motif protein 14##NM_001198837|RBM14|10432|RNA binding motif protein 14##NM_001198845|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_001198846|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_006328|RBM14|10432|RNA binding motif protein 14##AF315632|RBM14|10432|RNA binding motif protein 14##AF315633|RBM14|10432|RNA binding motif protein 14##AK222830|RBM14|10432|RNA binding motif protein 14##AK021768|RBM14|10432|RNA binding motif protein 14##AF080561|RBM14|10432|RNA binding motif protein 14##BC000488|RBM14|10432|RNA binding motif protein 14##BC023619|RBM14|10432|RNA binding motif protein 14##DQ294957|RBM14|10432|RNA binding motif protein 14##EU446504|RBM14|10432|RNA binding motif protein 14##NM_001198843|RBM4|5936|RNA binding motif protein 4##NM_001198844|RBM4|5936|RNA binding motif protein 4##NM_002896|RBM4|5936|RNA binding motif protein 4##AK303984|RBM4|5936|RNA binding motif protein 4##BC021120|RBM4|5936|RNA binding motif protein 4##AK225071|RBM4|5936|RNA binding motif protein 4##BC032735|RBM4|5936|RNA binding motif protein 4	0.993766	0.0	
chr13	20139214	20139317	reg1001434.p1	10.483	+	BC128146 BC128147 AJ421032 AY219890 NM_001141968 NM_130785 NM_199254	-28372	-	BC011721 NM_006001	-383303	-	None	None	None	TSC_hg19_v1_chr13_+_20207808 AK300258 NM_017520 BC017322 AK092556 AX747597 AL832864 BC003542	68570	+	TSC_hg19_v1_chr13_-_20346399 AL834505	207175	-	CR457272 DQ892679 DQ895922 AB528394 AF448795 AF449627 TSC_hg19_v1_chr13_-_20357042	217650	-	BC128146|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##BC128147|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##AJ421032|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##AY219890|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_001141968|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_130785|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_199254|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##BC011721|TUBA3C|7278|tubulin, alpha 3c##NM_006001|TUBA3C|7278|tubulin, alpha 3c##AK300258|MPHOSPH8|54737|M-phase phosphoprotein 8##NM_017520|MPHOSPH8|54737|M-phase phosphoprotein 8##BC017322|MPHOSPH8|54737|M-phase phosphoprotein 8##AK092556|MPHOSPH8|54737|M-phase phosphoprotein 8##AL832864|MPHOSPH8|54737|M-phase phosphoprotein 8##BC003542|MPHOSPH8|54737|M-phase phosphoprotein 8##AL834505|PSPC1|55269|paraspeckle component 1##CR457272|PSPC1|55269|paraspeckle component 1##DQ892679|PSPC1|55269|paraspeckle component 1##DQ895922|PSPC1|55269|paraspeckle component 1##AF448795|PSPC1|55269|paraspeckle component 1##AF449627|PSPC1|55269|paraspeckle component 1	0.993315	0.0	
chr17	62359460	62359592	reg1002178.p1	10.483	+	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	-18872	-	TSC_hg19_v1_chr17_-_62340645 BC036672	-18879	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	-18940	-	AF177201 CU679261 TSC_hg19_v1_chr17_-_62493178 AK307801 BC009194 NM_007215	133611	-	AB451257 AB451382 BT006943 DQ890687 DQ893774 AB384902 TSC_hg19_v1_chr17_-_62502320	142757	-	TSC_hg19_v1_chr17_-_62502393 BC016027 AB209919	142856	-	BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##AF177201|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AK307801|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##BC009194|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##NM_007215|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AB451257|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB451382|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BT006943|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ890687|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ893774|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BC016027|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB209919|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.984098	0.137978	denovo_WM_7:28:0.834
chr4	22391020	22391143	reg1001589.p1	10.482	+	NM_147182 TSC_hg19_v1_chr4_-_21950396	-440697	-	BX648990 DQ148490 NM_001035003	-691764	-	DQ148491 NM_001035004	-844803	-	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	126473	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	303511	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1500572	-	NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	1.679033	0.986208	CTCF.p2:-18:0.986	denovo_WM_7:50:0.969	denovo_WM_7:-96:0.450
chr5	37111949	37112108	reg1001673.p2	10.482	+	TSC_hg19_v1_chr5_+_36876945 BC146821 BX640644 BC131490 AK290347 BX538178 BX538177	-234958	+	TSC_hg19_v1_chr5_+_36876875 NM_015384 NM_133433 AJ627032 AJ640137	-235164	+	TSC_hg19_v1_chr5_-_36876762 AK000901	-235265	-	AK055192 TSC_hg19_v1_chr5_-_37185009	72949	-	TSC_hg19_v1_chr5_-_37249466 NM_023073	137438	-	AB018334 NM_004298	258858	-	BC146821|NIPBL|25836|Nipped-B homolog (Drosophila)##BX640644|NIPBL|25836|Nipped-B homolog (Drosophila)##BC131490|NIPBL|25836|Nipped-B homolog (Drosophila)##AK290347|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538178|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538177|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_015384|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_133433|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ627032|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ640137|NIPBL|25836|Nipped-B homolog (Drosophila)##AK000901|LOC646719|646719|uncharacterized LOC646719##AK055192|C5orf42|65250|chromosome 5 open reading frame 42##NM_023073|C5orf42|65250|chromosome 5 open reading frame 42##AB018334|NUP155|9631|nucleoporin 155kDa##NM_004298|NUP155|9631|nucleoporin 155kDa	0.089427	0.0	
chr4	110482466	110482606	reg1002082.p1	10.478	+	TSC_hg19_v1_chr4_+_110481443 NM_017918 AK291098 BC002633 AK095936 AK311030	-1119	+	TSC_hg19_v1_chr4_+_110354993 BC040137 AK300278	-127361	+	BC117135 BC143268 BC143269 BC143276 TSC_hg19_v1_chr4_+_110354970 NM_001042734 NM_006323	-127588	+	AB590350 DQ894589 EU176306 U20537 TSC_hg19_v1_chr4_-_110624602 BC000305 BC004460 NM_001226 NM_032992 U20536	142055	-	DQ892725 DQ896860 CU677869 TSC_hg19_v1_chr4_-_110651216 AF306567 AF332892 AY359024 BC017218 AK075389 AK313081 NM_030821	168586	-	AB590959 CU676662 J02770 TSC_hg19_v1_chr4_-_110723176 AK290625 BC005275 Y00318 BC020718 AK299232	240630	-	NM_017918|CCDC109B|55013|coiled-coil domain containing 109B##AK291098|CCDC109B|55013|coiled-coil domain containing 109B##BC002633|CCDC109B|55013|coiled-coil domain containing 109B##AK095936|CCDC109B|55013|coiled-coil domain containing 109B##AK311030|CCDC109B|55013|coiled-coil domain containing 109B##BC040137|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##AK300278|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC117135|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143268|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143269|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143276|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_001042734|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_006323|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##DQ894589|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##EU176306|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20537|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC000305|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC004460|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_001226|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_032992|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20536|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##DQ892725|PLA2G12A|81579|phospholipase A2, group XIIA##DQ896860|PLA2G12A|81579|phospholipase A2, group XIIA##AF306567|PLA2G12A|81579|phospholipase A2, group XIIA##AF332892|PLA2G12A|81579|phospholipase A2, group XIIA##AY359024|PLA2G12A|81579|phospholipase A2, group XIIA##BC017218|PLA2G12A|81579|phospholipase A2, group XIIA##AK075389|PLA2G12A|81579|phospholipase A2, group XIIA##AK313081|PLA2G12A|81579|phospholipase A2, group XIIA##NM_030821|PLA2G12A|81579|phospholipase A2, group XIIA##J02770|CFI|3426|complement factor I##AK290625|CFI|3426|complement factor I##BC005275|CFI|3426|complement factor I##Y00318|CFI|3426|complement factor I##BC020718|CFI|3426|complement factor I##AK299232|CFI|3426|complement factor I	1.353584	0.0	denovo_WM_7:-12:0.344	denovo_WM_7:73:0.743
chr9	131054309	131054427	reg1002001.p1	10.478	+	BC029911 AK311408 TSC_hg19_v1_chr9_+_131038571	-15833	+	TSC_hg19_v1_chr9_+_131038421 DQ414820 NM_001040011	-15946	+	TSC_hg19_v1_chr9_-_131038221 BX647920 AF248953 CU686726 BC069268 NM_004486	-16101	-	AK301986 TSC_hg19_v1_chr9_-_131084721 CU674714 DQ892156 DQ895351 AJ420462 AK001956 NM_015679 AF131848 BC001457	30276	-	TSC_hg19_v1_chr9_+_131084763 NM_016035 AK313650 EU216419 AF151850 AK025376 EU216420	30482	+	EU216421 TSC_hg19_v1_chr9_+_131085114 AK126646 EU216422 BC011895 AK301333 AB528109 AM392657 EU216423	30796	+	BC029911|SWI5|375757|SWI5 recombination repair homolog (yeast)##AK311408|SWI5|375757|SWI5 recombination repair homolog (yeast)##DQ414820|SWI5|375757|SWI5 recombination repair homolog (yeast)##NM_001040011|SWI5|375757|SWI5 recombination repair homolog (yeast)##BX647920|GOLGA2|2801|golgin A2##AF248953|GOLGA2|2801|golgin A2##BC069268|GOLGA2|2801|golgin A2##NM_004486|GOLGA2|2801|golgin A2##AK301986|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##DQ892156|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##DQ895351|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##AJ420462|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##AK001956|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##NM_015679|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##AF131848|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##BC001457|TRUB2|26995|TruB pseudouridine (psi) synthase homolog 2 (E. coli)##NM_016035|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##AK313650|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##EU216419|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##AF151850|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##AK025376|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##EU216420|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##EU216421|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##AK126646|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##EU216422|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##BC011895|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##AK301333|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##AM392657|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)##EU216423|COQ4|51117|coenzyme Q4 homolog (S. cerevisiae)	2.982933	0.0	denovo_WM_7:-62:0.220	denovo_WM_7:-102:0.227
chr12	12890067	12890247	reg1001348.p2	10.472	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	-11301	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-20031	+	AK096388 NM_006143	-41037	-	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	48420	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	76133	+	NM_003979	153798	+	NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_003979|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A	0.0	0.181514	
chr20	825238	825359	reg1001665.p1	10.469	+	BC004222 NM_207121	-8588	+	AK314165 NM_001042353 TSC_hg19_v1_chr20_+_814388	-10914	+	AK074650 BC009750 AK291706 NM_033409	-76121	-	NM_031424 BC022238 AB196290 DQ431181	67	+	AB527108 AF113708 BC111976 BC111978 AF074332 NM_015985 AK304756	71618	-	AB528812 AK122609 DQ355152 NM_001029871 NM_001040007 TSC_hg19_v1_chr20_-_983029	157619	-	BC004222|FAM110A|83541|family with sequence similarity 110, member A##NM_207121|FAM110A|83541|family with sequence similarity 110, member A##AK314165|FAM110A|83541|family with sequence similarity 110, member A##NM_001042353|FAM110A|83541|family with sequence similarity 110, member A##AK074650|C20orf54|113278|chromosome 20 open reading frame 54##BC009750|C20orf54|113278|chromosome 20 open reading frame 54##AK291706|C20orf54|113278|chromosome 20 open reading frame 54##NM_033409|C20orf54|113278|chromosome 20 open reading frame 54##NM_031424|FAM110A|83541|family with sequence similarity 110, member A##BC022238|FAM110A|83541|family with sequence similarity 110, member A##AB196290|FAM110A|83541|family with sequence similarity 110, member A##DQ431181|FAM110A|83541|family with sequence similarity 110, member A##AF113708|ANGPT4|51378|angiopoietin 4##BC111976|ANGPT4|51378|angiopoietin 4##BC111978|ANGPT4|51378|angiopoietin 4##AF074332|ANGPT4|51378|angiopoietin 4##NM_015985|ANGPT4|51378|angiopoietin 4##AK304756|ANGPT4|51378|angiopoietin 4##AK122609|RSPO4|343637|R-spondin 4##DQ355152|RSPO4|343637|R-spondin 4##NM_001029871|RSPO4|343637|R-spondin 4##NM_001040007|RSPO4|343637|R-spondin 4	0.997833	0.0	denovo_WM_7:26:0.658	denovo_WM_7:27:0.255
chr20	17860041	17860171	reg1001718.p2	10.466	+	BC054871 NM_001014977 NM_178477 BC062735	-179508	+	NM_001159495	-185787	+	TSC_hg19_v1_chr20_-_17662888 AB037819 BC009700 NM_001042576 NM_004587	-197223	-	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	89108	-	TSC_hg19_v1_chr20_-_17949438 BC002724 BC062638 BC064555 BC073171 AK123903 AK308017 AK296947 BC000100 AF121855 NM_152227	89334	-	TSC_hg19_v1_chr20_+_17949742 AF306686 AK315532 AF306684 AF306685 AK027503 BC016869 NM_052865	89556	+	BC054871|BANF2|140836|barrier to autointegration factor 2##NM_001014977|BANF2|140836|barrier to autointegration factor 2##NM_178477|BANF2|140836|barrier to autointegration factor 2##BC062735|BANF2|140836|barrier to autointegration factor 2##NM_001159495|BANF2|140836|barrier to autointegration factor 2##AB037819|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC009700|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001042576|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_004587|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5##BC002724|SNX5|27131|sorting nexin 5##BC062638|SNX5|27131|sorting nexin 5##AK123903|SNX5|27131|sorting nexin 5##AK308017|SNX5|27131|sorting nexin 5##AK296947|SNX5|27131|sorting nexin 5##BC000100|SNX5|27131|sorting nexin 5##AF121855|SNX5|27131|sorting nexin 5##NM_152227|SNX5|27131|sorting nexin 5##AF306686|C20orf72|92667|chromosome 20 open reading frame 72##AK315532|C20orf72|92667|chromosome 20 open reading frame 72##AF306684|C20orf72|92667|chromosome 20 open reading frame 72##AF306685|C20orf72|92667|chromosome 20 open reading frame 72##AK027503|C20orf72|92667|chromosome 20 open reading frame 72##BC016869|C20orf72|92667|chromosome 20 open reading frame 72##NM_052865|C20orf72|92667|chromosome 20 open reading frame 72	1.08089	0.0	denovo_WM_7:33:0.270
chr22	42143169	42143277	reg1001191.p1	10.466	+	BC025400 NM_152513 BC035720 BC144638	-47711	+	BC035403 NM_001142964 AK131457	-56665	+	AK124020 TSC_hg19_v1_chr22_-_42084824 BC005358 AF155235 NM_001003796	-58358	-	TSC_hg19_v1_chr22_+_42196682 NM_024821 AK026002 AK299311 BC017693 CR456484	53449	+	NM_004599 TSC_hg19_v1_chr22_+_42229105	85882	+	TSC_hg19_v1_chr22_+_42229114 BC051799	85889	+	BC025400|MEI1|150365|meiosis inhibitor 1##NM_152513|MEI1|150365|meiosis inhibitor 1##BC035720|MEI1|150365|meiosis inhibitor 1##BC144638|MEI1|150365|meiosis inhibitor 1##BC035403|C22orf46|79640|chromosome 22 open reading frame 46##NM_001142964|C22orf46|79640|chromosome 22 open reading frame 46##AK131457|C22orf46|79640|chromosome 22 open reading frame 46##BC005358|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##AF155235|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##NM_001003796|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##NM_024821|CCDC134|79879|coiled-coil domain containing 134##AK026002|CCDC134|79879|coiled-coil domain containing 134##AK299311|CCDC134|79879|coiled-coil domain containing 134##BC017693|CCDC134|79879|coiled-coil domain containing 134##CR456484|CCDC134|79879|coiled-coil domain containing 134##NM_004599|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051799|SREBF2|6721|sterol regulatory element binding transcription factor 2	0.996247	0.0	denovo_WM_7:26:0.718
chr4	71875838	71875973	reg1002063.p1	10.465	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	-16434	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	-16598	+	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	-107792	+	TSC_hg19_v1_chr4_+_72052481 AF011390 NM_001098484 NM_001134742 AK307594 AF157492	176818	+	AF069510 AB470072 AF053753 AF053754 AF310248 EF531618 TSC_hg19_v1_chr4_+_72102322	226381	+	BC030977 NM_003759 AF007216 AK308038 CU689062	328962	+	M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##AF011390|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001098484|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001134742|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK307594|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF157492|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF069510|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AB470072|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF053753|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF053754|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF310248|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##EF531618|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##BC030977|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_003759|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF007216|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK308038|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	0.999762	0.921091	CTCF.p2:6:0.921	denovo_WM_7:-12:0.298	denovo_WM_7:-13:0.298	denovo_WM_7:-14:0.298
chr15	65620553	65620663	reg1001734.p2	10.462	+	BC006389 NM_017851 TSC_hg19_v1_chr15_-_65579223 AK000516	-41448	-	BC035776 AF035408 AY358904 AK225652 AK225926 AK313352 TSC_hg19_v1_chr15_-_65503811 NM_003613	-116796	-	TSC_hg19_v1_chr15_-_65477676 AL136922 AK308133 AK292316 AK310614	-142922	-	BC042054 TSC_hg19_v1_chr15_-_65670341 BC067107 NM_004884	49743	-	TSC_hg19_v1_chr15_-_65715258 AB529157	94637	-	TSC_hg19_v1_chr15_-_65715412 AB052622 NM_020962	94793	-	BC006389|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##NM_017851|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##AK000516|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##BC035776|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AF035408|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AY358904|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225652|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225926|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK313352|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##NM_003613|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AL136922|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK308133|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK292316|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK310614|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC042054|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##BC067107|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##NM_004884|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##AB052622|IGDCC4|57722|immunoglobulin superfamily, DCC subclass, member 4##NM_020962|IGDCC4|57722|immunoglobulin superfamily, DCC subclass, member 4	1.98944	0.0	denovo_WM_7:-3:0.791
chr1	222906285	222906452	reg1001150.p2	10.458	+	TSC_hg19_v1_chr1_+_222886732 AK315930 AK293974	-19635	+	TSC_hg19_v1_chr1_+_222886714 AK304445	-19680	+	BC053552 TSC_hg19_v1_chr1_+_222886145 BC113635 BC113637 BC143811 BC105293	-20253	+	AK125494 NM_207468	4189	+	TSC_hg19_v1_chr1_+_222988422 NM_032890	82023	+	TSC_hg19_v1_chr1_-_223316591 NM_003268	410238	-	AK315930|BROX|148362|BRO1 domain and CAAX motif containing##AK293974|BROX|148362|BRO1 domain and CAAX motif containing##AK304445|BROX|148362|BRO1 domain and CAAX motif containing##BC113635|BROX|148362|BRO1 domain and CAAX motif containing##BC113637|BROX|148362|BRO1 domain and CAAX motif containing##BC143811|BROX|148362|BRO1 domain and CAAX motif containing##AK125494|FAM177B|400823|family with sequence similarity 177, member B##NM_207468|FAM177B|400823|family with sequence similarity 177, member B##NM_032890|DISP1|84976|dispatched homolog 1 (Drosophila)##NM_003268|TLR5|7100|toll-like receptor 5	2.907414	0.0	denovo_WM_7:25:0.390	denovo_WM_7:26:0.283	denovo_WM_7:44:0.625	denovo_WM_7:61:0.211	denovo_WM_7:62:0.216	denovo_WM_7:63:0.235
chr19	6244063	6244216	reg1001532.p1	10.458	+	TSC_hg19_v1_chr19_-_6199558 AK056073	-44592	-	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	-108386	+	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	-133527	-	AB463904 TSC_hg19_v1_chr19_-_6279803	35664	-	TSC_hg19_v1_chr19_-_6279967 D14539 NM_005934	35826	-	AF347024 BC112122 BC112124 NM_133492	89461	-	AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##D14539|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##NM_005934|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##AF347024|ACER1|125981|alkaline ceramidase 1##BC112122|ACER1|125981|alkaline ceramidase 1##BC112124|ACER1|125981|alkaline ceramidase 1##NM_133492|ACER1|125981|alkaline ceramidase 1	0.994984	0.0	
chr6	47429101	47429233	reg1001878.p1	10.454	+	TSC_hg19_v1_chr6_-_47277647 NM_014452	-151472	-	AK315560 TSC_hg19_v1_chr6_-_47277645	-151522	-	AK001504 TSC_hg19_v1_chr6_-_47277640	-151527	-	TSC_hg19_v1_chr6_+_47445524 NM_012120	16348	+	TSC_hg19_v1_chr6_+_47445937 AF146277 BC069444	16749	+	AY140953 DQ315369 NM_153839	195106	+	NM_014452|TNFRSF21|27242|tumor necrosis factor receptor superfamily, member 21##AK315560|TNFRSF21|27242|tumor necrosis factor receptor superfamily, member 21##AK001504|TNFRSF21|27242|tumor necrosis factor receptor superfamily, member 21##NM_012120|CD2AP|23607|CD2-associated protein##AF146277|CD2AP|23607|CD2-associated protein##BC069444|CD2AP|23607|CD2-associated protein##AY140953|GPR111|222611|G protein-coupled receptor 111##DQ315369|GPR111|222611|G protein-coupled receptor 111##NM_153839|GPR111|222611|G protein-coupled receptor 111	0.999459	0.0	
chr18	13567666	13567826	reg1000970.p1	10.453	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-348961	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-576401	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-619682	+	NM_001003674 NM_001003675	43918	+	AF009426 AF009427 NM_004338 NM_181483	53120	+	TSC_hg19_v1_chr18_-_13726549 AK055618	158760	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.996769	0.0	denovo_WM_7:12:0.530	denovo_WM_7:13:0.307
chr8	142012344	142012486	reg1001786.p1	10.452	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	-1159	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-366791	-	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-490852	+	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	126322	+	AK128212 NM_001080431	226257	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	251775	-	AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4	0.996728	0.0	denovo_WM_7:-24:0.527	denovo_WM_7:-25:0.470
chr22	35795720	35795880	reg1001995.p2	10.451	+	AF051791 TSC_hg19_v1_chr22_+_35779219	-16638	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	-18674	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	-18732	+	TSC_hg19_v1_chr22_+_35796134 NM_006739 AK223323 AK301121 D83986 AK130620 AK291136 AK298624 AK122853 AK312533	325	+	TSC_hg19_v1_chr22_+_35796157 BC000142 AK308343 CR456517 X74795 BC003656	371	+	TSC_hg19_v1_chr22_+_35796295 AB463121 CU013117 CU013405 CU674060 CU678562	562	+	AF051791|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##NM_006739|MCM5|4174|minichromosome maintenance complex component 5##AK223323|MCM5|4174|minichromosome maintenance complex component 5##AK301121|MCM5|4174|minichromosome maintenance complex component 5##D83986|MCM5|4174|minichromosome maintenance complex component 5##AK130620|MCM5|4174|minichromosome maintenance complex component 5##AK291136|MCM5|4174|minichromosome maintenance complex component 5##AK298624|MCM5|4174|minichromosome maintenance complex component 5##AK122853|MCM5|4174|minichromosome maintenance complex component 5##AK312533|MCM5|4174|minichromosome maintenance complex component 5##BC000142|MCM5|4174|minichromosome maintenance complex component 5##AK308343|MCM5|4174|minichromosome maintenance complex component 5##CR456517|MCM5|4174|minichromosome maintenance complex component 5##X74795|MCM5|4174|minichromosome maintenance complex component 5##BC003656|MCM5|4174|minichromosome maintenance complex component 5##CU013117|MCM5|4174|minichromosome maintenance complex component 5##CU013405|MCM5|4174|minichromosome maintenance complex component 5	1.690783	0.0	denovo_WM_7:18:0.920	denovo_WM_7:35:0.552
chrX	102941874	102942054	reg1001812.p2	10.450	+	BC056899 AF167174 AF100620 D14812 AB050778 TSC_hg19_v1_chrX_-_102941628 AK126115 AK223504 BC093013 NM_001142418 NM_001142423 NM_001142424 NM_001142425 NM_001142426 NM_001142429 NM_001142430 NM_012286	-301	-	NM_001006639 NM_004780 M99701 BC000809	-58056	+	NM_001006640	-58317	+	TSC_hg19_v1_chrX_-_102942976 AK302083 AK056012 NM_001142419 NM_001142420 NM_001142421 NM_001142422 NM_001142427 NM_001142428 NM_001142431 NM_001142432	1062	-	AK130867 BC029575 NM_182541	23872	+	AK309010 NM_001024452 NM_001172285	41587	-	BC056899|MORF4L2|9643|mortality factor 4 like 2##AF167174|MORF4L2|9643|mortality factor 4 like 2##AF100620|MORF4L2|9643|mortality factor 4 like 2##D14812|MORF4L2|9643|mortality factor 4 like 2##AB050778|MORF4L2|9643|mortality factor 4 like 2##AK126115|MORF4L2|9643|mortality factor 4 like 2##AK223504|MORF4L2|9643|mortality factor 4 like 2##BC093013|MORF4L2|9643|mortality factor 4 like 2##NM_001142418|MORF4L2|9643|mortality factor 4 like 2##NM_001142423|MORF4L2|9643|mortality factor 4 like 2##NM_001142424|MORF4L2|9643|mortality factor 4 like 2##NM_001142425|MORF4L2|9643|mortality factor 4 like 2##NM_001142426|MORF4L2|9643|mortality factor 4 like 2##NM_001142429|MORF4L2|9643|mortality factor 4 like 2##NM_001142430|MORF4L2|9643|mortality factor 4 like 2##NM_012286|MORF4L2|9643|mortality factor 4 like 2##NM_001006639|TCEAL1|9338|transcription elongation factor A (SII)-like 1##NM_004780|TCEAL1|9338|transcription elongation factor A (SII)-like 1##M99701|TCEAL1|9338|transcription elongation factor A (SII)-like 1##BC000809|TCEAL1|9338|transcription elongation factor A (SII)-like 1##NM_001006640|TCEAL1|9338|transcription elongation factor A (SII)-like 1##AK302083|MORF4L2|9643|mortality factor 4 like 2##AK056012|MORF4L2|9643|mortality factor 4 like 2##NM_001142419|MORF4L2|9643|mortality factor 4 like 2##NM_001142420|MORF4L2|9643|mortality factor 4 like 2##NM_001142421|MORF4L2|9643|mortality factor 4 like 2##NM_001142422|MORF4L2|9643|mortality factor 4 like 2##NM_001142427|MORF4L2|9643|mortality factor 4 like 2##NM_001142428|MORF4L2|9643|mortality factor 4 like 2##NM_001142431|MORF4L2|9643|mortality factor 4 like 2##NM_001142432|MORF4L2|9643|mortality factor 4 like 2##AK130867|TMEM31|203562|transmembrane protein 31##BC029575|TMEM31|203562|transmembrane protein 31##NM_182541|TMEM31|203562|transmembrane protein 31##AK309010|GLRA4|441509|glycine receptor, alpha 4##NM_001024452|GLRA4|441509|glycine receptor, alpha 4##NM_001172285|GLRA4|441509|glycine receptor, alpha 4	2.008932	0.0	denovo_WM_7:55:0.540	denovo_WM_7:73:0.695	denovo_WM_7:74:0.270
chr6	13695552	13695725	reg1001869.p1	10.448	+	TSC_hg19_v1_chr6_+_13615570 AF172066 NM_016167 BC062683 AK075301 BC023517 CU692792	-80038	+	BC064478 TSC_hg19_v1_chr6_-_13615415	-80235	-	TSC_hg19_v1_chr6_+_13574830 NM_001193267 NM_001242827 NM_031244 BX538030 AK302467 AK000355 AK294162 AJ420496 NM_012241 BC000126 AF083110	-120795	+	AB008515 TSC_hg19_v1_chr6_-_13711498	15853	-	TSC_hg19_v1_chr6_-_13711730 AB055311 NM_005493	16097	-	BC052781 TSC_hg19_v1_chr6_-_13711955	16336	-	AF172066|NOL7|51406|nucleolar protein 7, 27kDa##NM_016167|NOL7|51406|nucleolar protein 7, 27kDa##BC062683|NOL7|51406|nucleolar protein 7, 27kDa##AK075301|NOL7|51406|nucleolar protein 7, 27kDa##BC023517|NOL7|51406|nucleolar protein 7, 27kDa##NM_001193267|SIRT5|23408|sirtuin 5##NM_001242827|SIRT5|23408|sirtuin 5##NM_031244|SIRT5|23408|sirtuin 5##BX538030|SIRT5|23408|sirtuin 5##AK302467|SIRT5|23408|sirtuin 5##AK000355|SIRT5|23408|sirtuin 5##AK294162|SIRT5|23408|sirtuin 5##AJ420496|SIRT5|23408|sirtuin 5##NM_012241|SIRT5|23408|sirtuin 5##BC000126|SIRT5|23408|sirtuin 5##AF083110|SIRT5|23408|sirtuin 5##AB008515|RANBP9|10048|RAN binding protein 9##AB055311|RANBP9|10048|RAN binding protein 9##NM_005493|RANBP9|10048|RAN binding protein 9##BC052781|RANBP9|10048|RAN binding protein 9	0.989831	0.0	
chr10	126516236	126516363	reg1001618.p1	10.446	+	NM_032182 TSC_hg19_v1_chr10_+_126490387 AK296677 D63877 BC008999	-25927	+	TSC_hg19_v1_chr10_-_126480455 CU693146 AL832292 AF318345 BC026167 NM_212554	-35895	-	TSC_hg19_v1_chr10_-_126432908 NM_014661	-83388	-	NM_017580	114392	+	AF222711 NM_022802	200153	-	TSC_hg19_v1_chr10_-_126849010 AF016507 BC072020	332727	-	NM_032182|FAM175B|23172|family with sequence similarity 175, member B##AK296677|FAM175B|23172|family with sequence similarity 175, member B##D63877|FAM175B|23172|family with sequence similarity 175, member B##BC008999|FAM175B|23172|family with sequence similarity 175, member B##AL832292|METTL10|399818|methyltransferase like 10##AF318345|METTL10|399818|methyltransferase like 10##BC026167|METTL10|399818|methyltransferase like 10##NM_212554|METTL10|399818|methyltransferase like 10##NM_014661|FAM53B|9679|family with sequence similarity 53, member B##NM_017580|ZRANB1|54764|zinc finger, RAN-binding domain containing 1##AF222711|CTBP2|1488|C-terminal binding protein 2##NM_022802|CTBP2|1488|C-terminal binding protein 2##AF016507|CTBP2|1488|C-terminal binding protein 2##BC072020|CTBP2|1488|C-terminal binding protein 2	0.996991	0.196736	denovo_WM_7:27:0.985
chr12	109108143	109108257	reg1002057.p1	10.445	+	TSC_hg19_v1_chr12_-_109027671 AK127638 AK298738 AK098315 NM_003006	-80538	-	TSC_hg19_v1_chr12_-_109027639 AK300057 AK290395 BC029782	-80567	-	AK225644 U02297 AK295238 TSC_hg19_v1_chr12_-_109027584	-80626	-	TSC_hg19_v1_chr12_-_109125268 AL162070 AK297463	17063	-	TSC_hg19_v1_chr12_-_109125284 BC002342 AB209909	17080	-	TSC_hg19_v1_chr12_-_109125295 AK023205 AK223073 AK304839 AK311315 AK316065 AB030656 NM_014325	17092	-	AK127638|SELPLG|6404|selectin P ligand##AK098315|SELPLG|6404|selectin P ligand##NM_003006|SELPLG|6404|selectin P ligand##AK290395|SELPLG|6404|selectin P ligand##BC029782|SELPLG|6404|selectin P ligand##AK225644|SELPLG|6404|selectin P ligand##U02297|SELPLG|6404|selectin P ligand##AK295238|SELPLG|6404|selectin P ligand##AL162070|CORO1C|23603|coronin, actin binding protein, 1C##AK297463|CORO1C|23603|coronin, actin binding protein, 1C##BC002342|CORO1C|23603|coronin, actin binding protein, 1C##AB209909|CORO1C|23603|coronin, actin binding protein, 1C##AK023205|CORO1C|23603|coronin, actin binding protein, 1C##AK223073|CORO1C|23603|coronin, actin binding protein, 1C##AK304839|CORO1C|23603|coronin, actin binding protein, 1C##AK311315|CORO1C|23603|coronin, actin binding protein, 1C##AK316065|CORO1C|23603|coronin, actin binding protein, 1C##AB030656|CORO1C|23603|coronin, actin binding protein, 1C##NM_014325|CORO1C|23603|coronin, actin binding protein, 1C	0.990736	0.0	denovo_WM_7:-15:0.237	denovo_WM_7:-16:0.237	denovo_WM_7:-17:0.237	denovo_WM_7:-18:0.237
chr12	120559910	120560037	reg1001649.p2	10.444	+	TSC_hg19_v1_chr12_+_120554697 BC041995 AK130486	-5264	+	TSC_hg19_v1_chr12_-_120554632 NM_001167606 NM_006861	-5334	-	TSC_hg19_v1_chr12_-_120554558 AK300127	-5408	-	TSC_hg19_v1_chr12_-_120632504 AB587307 AK297271 BC153881 D86973 NM_006836	72515	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	78928	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	78937	-	NM_001167606|RAB35|11021|RAB35, member RAS oncogene family##NM_006861|RAB35|11021|RAB35, member RAS oncogene family##AK300127|RAB35|11021|RAB35, member RAS oncogene family##AK297271|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC153881|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##D86973|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##NM_006836|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0	0.999217	0.0	denovo_WM_7:21:0.348	denovo_WM_7:23:0.597
chr16	24917663	24917771	reg1001694.p1	10.443	+	AY044906 NM_052944 AK298373 AK125267	-60124	+	TSC_hg19_v1_chr16_+_24802422 AL833757	-115236	+	AY035864 TSC_hg19_v1_chr16_+_24788680	-129093	+	TSC_hg19_v1_chr16_-_24942663 AK001170	24974	-	AK125358 TSC_hg19_v1_chr16_-_24968918	51175	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	108895	-	AY044906|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##NM_052944|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK298373|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK125267|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AL833757|TNRC6A|27327|trinucleotide repeat containing 6A##AY035864|TNRC6A|27327|trinucleotide repeat containing 6A##AK001170|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17	0.990811	0.038033	denovo_WM_7:-42:0.237	denovo_WM_7:-43:0.237	denovo_WM_7:-44:0.237	denovo_WM_7:-45:0.237
chr2	111877604	111877772	reg1002040.p1	10.443	+	AK300513 NM_001142807 BC022268	-387509	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-441866	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-442045	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	799	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	763938	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	764073	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.869131	0.0	denovo_WM_7:-6:0.205	denovo_WM_7:-9:0.495
chr6	10435407	10435522	reg1001784.p2	10.441	+	AK296737 NM_001042425	-15673	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	-19996	-	FJ794945 M61156 M36711 X52611 TSC_hg19_v1_chr6_-_10415305	-20189	-	AK307373 NM_145649 AK291767 AK310216 AL832714	86144	+	NM_001491	120484	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	150550	+	AK296737|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001042425|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##FJ794945|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M61156|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M36711|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##X52611|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)	1.784335	0.678867	CTCF.p2:22:0.679	denovo_WM_7:-24:0.843	denovo_WM_7:98:0.318
chr4	106635548	106635675	reg1001821.p1	10.437	+	AK292355 BC032942 NM_001031720	-3644	+	TSC_hg19_v1_chr4_+_106629965 AK303547 BX648355 NM_024751 AK023335 AK225563	-5638	+	TSC_hg19_v1_chr4_-_106629819 BC014442 AK314939 NM_001142471 NM_020395	-5770	-	TSC_hg19_v1_chr4_+_106816593 AK295772 NM_001033047 NM_001184690 NM_001184691 NM_001184692 NM_001184693 AK302477 AK304279 AY358336	180990	+	TSC_hg19_v1_chr4_+_106816634 AK290029 AK304721 AL832465 BC131587	181079	+	NM_001142415 AK297950 AK095951 NM_004757	601198	+	AK292355|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##BC032942|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##NM_001031720|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##AK303547|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##BX648355|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##NM_024751|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##AK023335|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##AK225563|GSTCD|79807|glutathione S-transferase, C-terminal domain containing##BC014442|INTS12|57117|integrator complex subunit 12##AK314939|INTS12|57117|integrator complex subunit 12##NM_001142471|INTS12|57117|integrator complex subunit 12##NM_020395|INTS12|57117|integrator complex subunit 12##AK295772|NPNT|255743|nephronectin##NM_001033047|NPNT|255743|nephronectin##NM_001184690|NPNT|255743|nephronectin##NM_001184691|NPNT|255743|nephronectin##NM_001184692|NPNT|255743|nephronectin##NM_001184693|NPNT|255743|nephronectin##AK302477|NPNT|255743|nephronectin##AK304279|NPNT|255743|nephronectin##AY358336|NPNT|255743|nephronectin##AK290029|NPNT|255743|nephronectin##AK304721|NPNT|255743|nephronectin##AL832465|NPNT|255743|nephronectin##BC131587|NPNT|255743|nephronectin##NM_001142415|AIMP1|9255|aminoacyl tRNA synthetase complex-interacting multifunctional protein 1##AK297950|AIMP1|9255|aminoacyl tRNA synthetase complex-interacting multifunctional protein 1##AK095951|AIMP1|9255|aminoacyl tRNA synthetase complex-interacting multifunctional protein 1##NM_004757|AIMP1|9255|aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	1.445493	0.0	denovo_WM_7:-5:0.448	denovo_WM_7:16:0.213	denovo_WM_7:17:0.583
chr6_dbb_hap3	2873853	2873971	reg1001716.p2	10.435	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997015	0.0	denovo_WM_7:0:0.424	denovo_WM_7:-1:0.424
chr12	102232543	102232651	reg1001422.p2	10.434	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-8011	-	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	-99378	-	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	-140975	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	38521	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	38861	+	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	223153	-	AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##CR457171|CCDC53|51019|coiled-coil domain containing 53	2.081674	0.0	denovo_WM_7:-64:0.492	denovo_WM_7:-65:0.492	denovo_WM_7:-83:0.237	denovo_WM_7:-84:0.237	denovo_WM_7:-85:0.237	denovo_WM_7:-86:0.237
chr12	25518015	25518182	reg1001488.p4	10.432	+	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-114157	-	TSC_hg19_v1_chr12_-_25403822 BC013572	-114283	-	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-169892	+	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	188098	-	AK296816 NM_001145727	283389	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	593903	+	AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	1.75848	0.0	denovo_WM_7:5:0.970	denovo_WM_7:-54:0.289
chr4	164666169	164666290	reg1001753.p1	10.431	+	AB463878 AK000675 AK301408 NM_017923	-131514	-	TSC_hg19_v1_chr4_+_164415868 BC011842	-250356	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-250387	+	NM_012403	452633	-	AK289711 NM_001166373	638177	-	TSC_hg19_v1_chr4_+_165878104 AK056221 NM_153027	1211873	+	AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK056221|C4orf39|152756|chromosome 4 open reading frame 39##NM_153027|C4orf39|152756|chromosome 4 open reading frame 39	1.914172	0.0	denovo_WM_7:25:0.573	denovo_WM_7:27:0.336	denovo_WM_7:46:0.810
chr18	43267369	43267523	reg1002011.p2	10.429	+	AF349446 NM_007163	-72681	+	NM_001242692 AK292422	-474494	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-1006578	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	36658	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	36711	+	NM_001146037	39471	+	AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	0.997452	0.0	denovo_WM_7:6:0.493	denovo_WM_7:7:0.493
chr17	48498871	48499008	reg1001398.p1	10.428	+	TSC_hg19_v1_chr17_-_48474910 AK025328 NM_018509	-24027	-	TSC_hg19_v1_chr17_-_48474880 BC017168	-24064	-	BC033695 TSC_hg19_v1_chr17_-_48474867	-24074	-	AK300625 NM_025149 TSC_hg19_v1_chr17_+_48503578 AK294205 AY358660 BC014123 BC012053	4622	+	TSC_hg19_v1_chr17_+_48503610 AK024573 AK225044 AK225561 AK295258 AK300145 CU680180 CU680788	4675	+	AK311109 TSC_hg19_v1_chr17_+_48545703 AK308584	46760	+	AK025328|LRRC59|55379|leucine rich repeat containing 59##NM_018509|LRRC59|55379|leucine rich repeat containing 59##BC017168|LRRC59|55379|leucine rich repeat containing 59##BC033695|LRRC59|55379|leucine rich repeat containing 59##AK300625|ACSF2|80221|acyl-CoA synthetase family member 2##NM_025149|ACSF2|80221|acyl-CoA synthetase family member 2##AK294205|ACSF2|80221|acyl-CoA synthetase family member 2##AY358660|ACSF2|80221|acyl-CoA synthetase family member 2##BC014123|ACSF2|80221|acyl-CoA synthetase family member 2##BC012053|ACSF2|80221|acyl-CoA synthetase family member 2##AK024573|ACSF2|80221|acyl-CoA synthetase family member 2##AK225044|ACSF2|80221|acyl-CoA synthetase family member 2##AK225561|ACSF2|80221|acyl-CoA synthetase family member 2##AK295258|ACSF2|80221|acyl-CoA synthetase family member 2##AK300145|ACSF2|80221|acyl-CoA synthetase family member 2##AK308584|ACSF2|80221|acyl-CoA synthetase family member 2	1.048762	0.0	
chr3	105405264	105405396	reg1002062.p1	10.426	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-319508	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-319750	+	AY090780 NM_175056 BC143817	-3251463	+	CR749655 TSC_hg19_v1_chr3_-_105421064	15724	-	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	182477	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1554149	-	AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b	1.519245	0.0	denovo_WM_7:-23:0.300	denovo_WM_7:-26:0.473	denovo_WM_7:79:0.364
chr12	131055859	131055975	reg1001945.p2	10.425	+	AB002316 NM_015347	-53508	-	TSC_hg19_v1_chr12_+_130822635 BC028581 AF387507 AF104260 AK093133 AX747944	-233295	+	NM_001190971 NM_004764	-233485	+	TSC_hg19_v1_chr12_-_131200818 BC007632	144908	-	TSC_hg19_v1_chr12_-_131323796 D14582 BC047496 NM_001980 NM_194356	267836	-	TSC_hg19_v1_chr12_+_131356615 AF054183 AK311223 AK316193 AK312466 BC000852 NM_006325	300669	+	AB002316|RIMBP2|23504|RIMS binding protein 2##NM_015347|RIMBP2|23504|RIMS binding protein 2##BC028581|PIWIL1|9271|piwi-like 1 (Drosophila)##AF387507|PIWIL1|9271|piwi-like 1 (Drosophila)##AF104260|PIWIL1|9271|piwi-like 1 (Drosophila)##AK093133|PIWIL1|9271|piwi-like 1 (Drosophila)##NM_001190971|PIWIL1|9271|piwi-like 1 (Drosophila)##NM_004764|PIWIL1|9271|piwi-like 1 (Drosophila)##BC007632|RIMBP2|23504|RIMS binding protein 2##D14582|STX2|2054|syntaxin 2##BC047496|STX2|2054|syntaxin 2##NM_001980|STX2|2054|syntaxin 2##NM_194356|STX2|2054|syntaxin 2##AF054183|RAN|5901|RAN, member RAS oncogene family##AK316193|RAN|5901|RAN, member RAS oncogene family##AK312466|RAN|5901|RAN, member RAS oncogene family##BC000852|RAN|5901|RAN, member RAS oncogene family##NM_006325|RAN|5901|RAN, member RAS oncogene family	0.99585	0.0	
chr7	125053524	125053704	reg1001179.p2	10.425	+	NM_001042594 NM_015450	-483578	-	BC130600 BC130604 NM_001024603	-622812	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-647818	-	NM_000845	1829954	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	1838751	-	TSC_hg19_v1_chr7_-_126893165 AK290197	1839538	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.853976	0.0	denovo_WM_7:-6:0.854
chr17	2834366	2834545	reg1001920.p1	10.424	+	AJ628446 AJ628447 NM_001100398 NM_015085 TSC_hg19_v1_chr17_+_2699761 CR627427 BC140870 BC140871	-134702	+	AK124640 TSC_hg19_v1_chr17_+_2680496	-154032	+	NM_015229 TSC_hg19_v1_chr17_-_2615039	-219468	-	BC106876 NM_014566 AB529301	132472	-	AB529300 BC069552 BC106735 BC106736 NM_002548	161834	-	BC069379 NM_003555 BC095520 AB529303	196446	-	AJ628446|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628447|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_001100398|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015085|RAP1GAP2|23108|RAP1 GTPase activating protein 2##CR627427|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140870|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140871|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AK124640|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015229|KIAA0664|23277|KIAA0664##BC106876|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##NM_014566|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##BC069552|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106735|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106736|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##NM_002548|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC069379|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1##NM_003555|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1##BC095520|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1	1.137339	0.0	
chr2	110367108	110367288	reg1001474.p1	10.423	+	NM_001099289 DQ307286	-621135	+	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	-761451	-	TSC_hg19_v1_chr2_-_109605623 AK296936	-761579	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	4283	-	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	4527	-	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	4747	+	NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##AK296936|EDAR|10913|ectodysplasin A receptor##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57	0.992578	0.0	
chr1	8532838	8532956	reg1001767.p1	10.419	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-48880	-	NM_001080397	-148508	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-446499	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	344695	-	GU170215 NM_001201483	398737	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	405810	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.998319	0.0	denovo_WM_7:24:0.643	denovo_WM_7:25:0.249
chr9	9606934	9607114	reg1001472.p2	10.419	+	TSC_hg19_v1_chr9_+_8858136 AK094342	-748891	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-873105	-	TSC_hg19_v1_chr9_+_8713275 AY779046	-893732	+	BC028038 NM_002839	1005698	-	NM_000550 X51420 BC052608	3086401	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	3167992	+	BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##AY779046|RPL18A|6142|ribosomal protein L18a##BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150	1.994814	0.0	
chr1	178577662	178577783	reg1001782.p2	10.418	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	-95456	+	AF047711 NM_004841 AK290308	-267088	+	BC110611 TSC_hg19_v1_chr1_+_178063651	-514081	+	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	116651	+	AK223467 BC050640 AB056476 TSC_hg19_v1_chr1_-_178840178 AY358278 NM_004673	262424	-	TSC_hg19_v1_chr1_+_178995028 AB007944	417298	+	AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##AF047711|RASAL2|9462|RAS protein activator like 2##NM_004841|RASAL2|9462|RAS protein activator like 2##AK290308|RASAL2|9462|RAS protein activator like 2##BC110611|RASAL2|9462|RAS protein activator like 2##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK223467|ANGPTL1|9068|angiopoietin-like 1##BC050640|ANGPTL1|9068|angiopoietin-like 1##AB056476|ANGPTL1|9068|angiopoietin-like 1##AY358278|ANGPTL1|9068|angiopoietin-like 1##NM_004673|ANGPTL1|9068|angiopoietin-like 1##AB007944|FAM20B|9917|family with sequence similarity 20, member B	0.999592	0.0	
chr1	54873532	54873712	reg1000036.p2	10.418	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-1538	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	-1600	-	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	-1834	-	TSC_hg19_v1_chr1_+_55007956 AK091112	134339	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	140272	+	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	215526	-	NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A	0.0	0.0	
chr2	191447898	191448050	reg1002174.p1	10.416	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-48508	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-48547	-	AK098085 TSC_hg19_v1_chr2_+_191301120	-146904	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	65992	+	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	297572	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	297583	+	NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK098085|MFSD6|54842|major facilitator superfamily domain containing 6##NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase	0.999836	0.0	denovo_WM_7:-7:0.419	denovo_WM_7:-8:0.419
chr15	23032906	23033063	reg1001662.p1	10.411	+	AK127094 AY763579 NM_001033028	-77230	+	TSC_hg19_v1_chr15_+_22892723 D38549 BC005097	-140247	+	TSC_hg19_v1_chr15_+_22892718 AY763578	-140268	+	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	1350	-	TSC_hg19_v1_chr15_-_23034365 AK300843	1383	-	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	1432	-	AK127094|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AY763579|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##NM_001033028|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##D38549|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##BC005097|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AY763578|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2	0.834233	0.0	denovo_WM_7:-11:0.317	denovo_WM_7:-12:0.517
chr15	59704878	59705026	reg1001692.p1	10.409	+	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	-39882	-	TSC_hg19_v1_chr15_-_59665065 AK291688	-39886	-	AB290177 TSC_hg19_v1_chr15_-_59665055	-39898	-	TSC_hg19_v1_chr15_+_59730403 BC022537 NM_152450 AK299220 AK307975	25398	+	TSC_hg19_v1_chr15_+_59903981 NM_004751 EF152283	199031	+	TSC_hg19_v1_chr15_+_59904093 BC017032	199154	+	BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##AB290177|MYO1E|4643|myosin IE##BC022537|FAM81A|145773|family with sequence similarity 81, member A##NM_152450|FAM81A|145773|family with sequence similarity 81, member A##AK299220|FAM81A|145773|family with sequence similarity 81, member A##AK307975|FAM81A|145773|family with sequence similarity 81, member A##NM_004751|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type##EF152283|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type##BC017032|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type	0.915183	0.872876	CTCF.p2:27:0.873	denovo_WM_7:-28:0.704
chr19	58239064	58239229	reg1001752.p1	10.409	+	EU446533 BC025728 TSC_hg19_v1_chr19_-_58239010 AK027159 AK310074 AK293680 AK091421 AK225665 NM_024833	-191	-	AB095924 BC152404 BC152426 BC152561 TSC_hg19_v1_chr19_-_58220573 AK092261 AX747437 NM_001085384	-18590	-	AK307670 TSC_hg19_v1_chr19_+_58193344 NM_138347 BX538151 AK300465 AK091273 AX746889 BC005868 BC041615 AB527717 CU692008	-45689	+	TSC_hg19_v1_chr19_+_58258182 AK299680 NM_173632	19026	+	TSC_hg19_v1_chr19_+_58258208 BX957217 CR749390 CR936802 AK055448	19066	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	41871	+	EU446533|ZNF671|79891|zinc finger protein 671##BC025728|ZNF671|79891|zinc finger protein 671##AK027159|ZNF671|79891|zinc finger protein 671##AK310074|ZNF671|79891|zinc finger protein 671##AK293680|ZNF671|79891|zinc finger protein 671##AK091421|ZNF671|79891|zinc finger protein 671##AK225665|ZNF671|79891|zinc finger protein 671##NM_024833|ZNF671|79891|zinc finger protein 671##AB095924|ZNF154|7710|zinc finger protein 154##BC152404|ZNF154|7710|zinc finger protein 154##BC152426|ZNF154|7710|zinc finger protein 154##BC152561|ZNF154|7710|zinc finger protein 154##AK092261|ZNF154|7710|zinc finger protein 154##NM_001085384|ZNF154|7710|zinc finger protein 154##AK307670|ZNF551|90233|zinc finger protein 551##NM_138347|ZNF551|90233|zinc finger protein 551##BX538151|ZNF551|90233|zinc finger protein 551##AK300465|ZNF551|90233|zinc finger protein 551##AK091273|ZNF551|90233|zinc finger protein 551##BC005868|ZNF551|90233|zinc finger protein 551##AK299680|ZNF776|284309|zinc finger protein 776##NM_173632|ZNF776|284309|zinc finger protein 776##BX957217|ZNF776|284309|zinc finger protein 776##CR749390|ZNF776|284309|zinc finger protein 776##CR936802|ZNF776|284309|zinc finger protein 776##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586	0.996061	0.0	
chr16	27266072	27266237	reg1000932.p2	10.408	+	AK297166 NM_001145348	-50859	+	NM_024773 AK023860 BC027911 AK310885 TSC_hg19_v1_chr16_+_27214846 AK225066	-51327	+	NM_001145545 BC031257 AK311574	-187907	+	TSC_hg19_v1_chr16_-_27280055 AK315674	13898	-	TSC_hg19_v1_chr16_-_27280058 AF161451 AF161455 AK056795 NM_145080	13931	-	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	59100	+	AK297166|JMJD5|79831|jumonji domain containing 5##NM_001145348|JMJD5|79831|jumonji domain containing 5##NM_024773|JMJD5|79831|jumonji domain containing 5##AK023860|JMJD5|79831|jumonji domain containing 5##BC027911|JMJD5|79831|jumonji domain containing 5##AK310885|JMJD5|79831|jumonji domain containing 5##AK225066|JMJD5|79831|jumonji domain containing 5##NM_001145545|C16orf82|162083|chromosome 16 open reading frame 82##BC031257|C16orf82|162083|chromosome 16 open reading frame 82##AK311574|C16orf82|162083|chromosome 16 open reading frame 82##AK315674|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161451|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161455|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK056795|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##NM_145080|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor	1.995673	0.0	denovo_WM_7:41:0.561	denovo_WM_7:42:0.281	denovo_WM_7:56:0.332	denovo_WM_7:57:0.613
chr5	139913329	139913509	reg1001295.p1	10.406	+	TSC_hg19_v1_chr5_+_139889636 BC073958	-23755	+	TSC_hg19_v1_chr5_+_139876504 AF217646	-36854	+	BC117677 BC117678 BC127127 BC150486 TSC_hg19_v1_chr5_+_139781478 AF521882 AF521883 BC009420	-131931	+	TSC_hg19_v1_chr5_+_139927246 AF038869 NM_003732 BC010881 BC069293 BC073751	13823	+	TSC_hg19_v1_chr5_-_139937042 AK024640 AF092038 BC067895 NM_001253764 AB590502	23628	-	AF318361 NM_001035235	24258	-	AF217646|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC117677|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC117678|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC127127|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC150486|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF521882|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF521883|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough##BC009420|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF038869|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##NM_003732|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##BC010881|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##BC069293|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##BC073751|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##AK024640|SRA1|10011|steroid receptor RNA activator 1##AF092038|SRA1|10011|steroid receptor RNA activator 1##BC067895|SRA1|10011|steroid receptor RNA activator 1##NM_001253764|SRA1|10011|steroid receptor RNA activator 1##AF318361|SRA1|10011|steroid receptor RNA activator 1##NM_001035235|SRA1|10011|steroid receptor RNA activator 1	1.875587	0.0	denovo_WM_7:3:0.415	denovo_WM_7:6:0.240	denovo_WM_7:-50:0.253
chr17	17082741	17082873	reg1001854.p1	10.403	+	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	-136843	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-207403	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-489203	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	26806	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	26850	-	TSC_hg19_v1_chr17_-_17140464 AF517523 BC015687	57638	-	NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6##AF517523|FLCN|201163|folliculin##BC015687|FLCN|201163|folliculin	1.018294	0.0	denovo_WM_7:-34:0.307	denovo_WM_7:-35:0.307	denovo_WM_7:-36:0.327
chr15	55698373	55698505	reg1001750.p1	10.402	+	TSC_hg19_v1_chr15_-_55652777 AF011794	-45633	-	D42138 TSC_hg19_v1_chr15_+_55611429 AK223330	-87015	+	TSC_hg19_v1_chr15_-_55611322 AB593170	-87099	-	AK292795 BC039871 TSC_hg19_v1_chr15_-_55700478 BC027621 AB033080 AK022459 BC015203 NM_004748 NM_001204450 NM_001204451 NM_020739	2142	-	NM_001198784 AK130862 BX648577	2356	+	AF337549 NM_001033559 NM_001033560 NM_130810	101992	-	AF011794|CCPG1|9236|cell cycle progression 1##D42138|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK223330|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK292795|CCPG1|9236|cell cycle progression 1##BC039871|CCPG1|9236|cell cycle progression 1##BC027621|CCPG1|9236|cell cycle progression 1##AB033080|CCPG1|9236|cell cycle progression 1##AK022459|CCPG1|9236|cell cycle progression 1##BC015203|CCPG1|9236|cell cycle progression 1##NM_004748|CCPG1|9236|cell cycle progression 1##NM_001204450|CCPG1|9236|cell cycle progression 1##NM_001204451|CCPG1|9236|cell cycle progression 1##NM_020739|CCPG1|9236|cell cycle progression 1##NM_001198784|FLJ27352|145788|uncharacterized LOC145788##AK130862|FLJ27352|145788|uncharacterized LOC145788##BX648577|FLJ27352|145788|uncharacterized LOC145788##AF337549|DYX1C1|161582|dyslexia susceptibility 1 candidate 1##NM_001033559|DYX1C1|161582|dyslexia susceptibility 1 candidate 1##NM_001033560|DYX1C1|161582|dyslexia susceptibility 1 candidate 1##NM_130810|DYX1C1|161582|dyslexia susceptibility 1 candidate 1	1.237134	0.0	denovo_WM_7:-16:0.841
chr16	28921541	28921673	reg1001450.p1	10.400	+	TSC_hg19_v1_chr16_+_28891234 AK128456	-30304	+	BX647367 NM_004320 NM_173201 TSC_hg19_v1_chr16_+_28889808 BX537784 BX537389 BX647365 BX648544 BC104452 BC104453 BX647366 BX649072 AK291314 BC037354 AB527323	-31707	+	TSC_hg19_v1_chr16_+_28877593 BC010704	-44018	+	AY129017 TSC_hg19_v1_chr16_-_28936536 AK295229 BC046118 AK026935 NM_024816 BC058900	14901	-	NM_001178098 NM_001770 BC006338 AK301363 AK313577 BC052294 M21097 X13312 AK307295 M28170 DQ893016 DQ896261 AK130657 AK301167 AK304456	21695	+	BC068007 BC101741 BC112182 TSC_hg19_v1_chr16_+_28962327 AF458593 NM_032815 AK074761 AK304172	40631	+	AK128456|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX647367|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##NM_004320|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##NM_173201|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX537784|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX537389|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX647365|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX648544|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BC104452|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BC104453|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX647366|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BX649072|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##AK291314|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BC037354|ATP2A1|487|ATPase, Ca++ transporting, cardiac muscle, fast twitch 1##BC010704|SH2B1|25970|SH2B adaptor protein 1##AK295229|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##BC046118|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##AK026935|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##NM_024816|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##BC058900|RABEP2|79874|rabaptin, RAB GTPase binding effector protein 2##NM_001178098|CD19|930|CD19 molecule##NM_001770|CD19|930|CD19 molecule##BC006338|CD19|930|CD19 molecule##AK301363|CD19|930|CD19 molecule##AK313577|CD19|930|CD19 molecule##BC052294|CD19|930|CD19 molecule##M21097|CD19|930|CD19 molecule##X13312|CD19|930|CD19 molecule##AK307295|CD19|930|CD19 molecule##DQ893016|CD19|930|CD19 molecule##DQ896261|CD19|930|CD19 molecule##AK130657|CD19|930|CD19 molecule##AK301167|CD19|930|CD19 molecule##AK304456|CD19|930|CD19 molecule##BC068007|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##BC101741|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##BC112182|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##AF458593|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##NM_032815|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##AK074761|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein##AK304172|NFATC2IP|84901|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein	0.993582	0.0	denovo_WM_7:7:0.298	denovo_WM_7:8:0.298	denovo_WM_7:9:0.298
chr16	60436919	60437044	reg1001565.p1	10.399	+	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-1668784	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-1718325	-	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	-1773236	-	AK124734 NM_001796	1633757	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	4718921	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	4718987	-	DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	1.178212	0.0	denovo_WM_7:-12:0.216	denovo_WM_7:-58:0.605
chrX	130927405	130927518	reg1000014.p3	10.398	+	BC137050 AB529233 NM_001004486	-249463	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-504049	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-504199	-	TSC_hg19_v1_chrX_-_130964633 AK097911	37190	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	229860	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	230179	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr10	63778293	63778412	reg1001796.p1	10.394	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-116921	+	NM_032199	-117340	+	BC041932 NM_173554	-355634	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	30744	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	250187	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	355691	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.992256	0.0	denovo_WM_7:-5:0.789
chr16	58340326	58340434	reg1001685.p2	10.393	+	AK302175 AK058068 BC057843 NM_001080492	-11466	-	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	-56512	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	-108669	-	NM_001126129 NM_001126130 NM_022770 TSC_hg19_v1_chr16_+_58426340 AK315622 AK023974 BC014437 BC005879 CR457283	86021	+	NM_020465 TSC_hg19_v1_chr16_+_58497607	157200	+	TSC_hg19_v1_chr16_+_58497628 AB021172	157258	+	AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54##AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001126129|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_001126130|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_022770|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK315622|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK023974|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC014437|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC005879|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##CR457283|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_020465|NDRG4|65009|NDRG family member 4##AB021172|NDRG4|65009|NDRG family member 4	0.997179	0.888345	denovo_WM_7:-17:0.976	CTCF.p2:37:0.888
chr8	23082860	23083004	reg1001026.p3	10.390	+	TSC_hg19_v1_chr8_-_23082664 NM_003844	-266	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	-320	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-61437	-	AK097202 NM_152272 BC042050	18226	+	TSC_hg19_v1_chr8_+_23104147 AK315664 AK021776	21203	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	21310	+	NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7##AK315664|CHMP7|91782|charged multivesicular body protein 7##AK021776|CHMP7|91782|charged multivesicular body protein 7##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7	0.998839	0.0	
chr10	18689468	18689647	reg1001828.p2	10.389	+	AK310943 NM_201590	-59944	+	NM_000724 AB208917 U95019	-139917	+	NM_201593 NM_201596 NM_201597 S60415 BC136409 AF137376 AF423191 AY393860 AY675091 AK296471 AK311694 AK307526 NM_001167945 NM_201571 NM_201572 AK293837	-259850	+	NM_201570 AK299873 AK295113	6	+	AK074323 BC035778 NM_182543	250975	-	BC033534 TSC_hg19_v1_chr10_-_18948215	258640	-	AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201593|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201596|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201597|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##S60415|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##BC136409|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF137376|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF423191|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY393860|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY675091|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK296471|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK311694|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK307526|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_001167945|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201571|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201572|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK293837|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6	0.989839	0.0	denovo_WM_7:20:0.322	denovo_WM_7:21:0.322	denovo_WM_7:22:0.322
chr13	41470101	41470281	reg1001873.p1	10.389	+	AF177333 TSC_hg19_v1_chr13_+_41363756	-106425	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-106507	+	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	-106602	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	25674	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	86005	-	AK304289 BC010575 BC030507 NM_001145353	86197	-	AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.012793	0.0	
chr9	133582877	133582999	reg1002028.p1	10.388	+	TSC_hg19_v1_chr9_+_133569166 AK001916 AK296605 NM_014285 AK022460 AK090512 AK303163 BC000747 DQ892753 EU176744 AB463621	-13774	+	AY004252 NM_021619	-42958	+	TSC_hg19_v1_chr9_+_133455030 BC007874	-127913	+	NM_007313 AB209642 M14753	6381	+	TSC_hg19_v1_chr9_+_133710665 M30833 X16416	127729	+	TSC_hg19_v1_chr9_+_133710748 M14754 NM_005157	127850	+	AK001916|EXOSC2|23404|exosome component 2##AK296605|EXOSC2|23404|exosome component 2##NM_014285|EXOSC2|23404|exosome component 2##AK022460|EXOSC2|23404|exosome component 2##AK090512|EXOSC2|23404|exosome component 2##AK303163|EXOSC2|23404|exosome component 2##BC000747|EXOSC2|23404|exosome component 2##DQ892753|EXOSC2|23404|exosome component 2##EU176744|EXOSC2|23404|exosome component 2##AY004252|PRDM12|59335|PR domain containing 12##NM_021619|PRDM12|59335|PR domain containing 12##BC007874|FUBP3|8939|far upstream element (FUSE) binding protein 3##NM_007313|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##AB209642|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M14753|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M30833|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##X16416|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M14754|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##NM_005157|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase	0.990066	0.987818	denovo_WM_7:22:0.854	CTCF.p2:-24:0.988
chr1	9239591	9239748	reg1001722.p1	10.385	+	DQ892804 DQ896051 TSC_hg19_v1_chr1_-_9189169 AK022194 AK292888 AK304154 AY768808 NM_024980 BC094733 BC018691	-50448	-	TSC_hg19_v1_chr1_-_9129695 M55531 AK290398 AK294368 NM_001135585 NM_003039	-109893	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	-110028	-	TSC_hg19_v1_chr1_+_9294832 BC081559	55146	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	55248	+	CR749282 TSC_hg19_v1_chr1_+_9299950	60269	+	DQ892804|GPR157|80045|G protein-coupled receptor 157##DQ896051|GPR157|80045|G protein-coupled receptor 157##AK022194|GPR157|80045|G protein-coupled receptor 157##AK292888|GPR157|80045|G protein-coupled receptor 157##AK304154|GPR157|80045|G protein-coupled receptor 157##AY768808|GPR157|80045|G protein-coupled receptor 157##NM_024980|GPR157|80045|G protein-coupled receptor 157##BC018691|GPR157|80045|G protein-coupled receptor 157##M55531|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK290398|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK294368|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_001135585|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_003039|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	0.993364	0.0	
chr10	89840133	89840271	reg1001805.p1	10.381	+	TSC_hg19_v1_chr10_+_89623420 U96180	-216775	+	TSC_hg19_v1_chr10_+_89623380 BC005821	-216813	+	TSC_hg19_v1_chr10_+_89623357 NM_000314 U92436	-216976	+	CU675143 BC005364 AK002080 AK296262 NM_001031709 NM_018363	502812	-	BC042900 BC031219 NM_001010939	506311	+	NM_001198828 NM_001198829 NM_001198830 NM_004190 AK301310 AK301320 AK308224 AK310128 AK312940 AK223468 AL833751 X05997	583978	+	U96180|PTEN|5728|phosphatase and tensin homolog##BC005821|PTEN|5728|phosphatase and tensin homolog##NM_000314|PTEN|5728|phosphatase and tensin homolog##U92436|PTEN|5728|phosphatase and tensin homolog##BC005364|RNLS|55328|renalase, FAD-dependent amine oxidase##AK002080|RNLS|55328|renalase, FAD-dependent amine oxidase##AK296262|RNLS|55328|renalase, FAD-dependent amine oxidase##NM_001031709|RNLS|55328|renalase, FAD-dependent amine oxidase##NM_018363|RNLS|55328|renalase, FAD-dependent amine oxidase##BC042900|LIPJ|142910|lipase, family member J##BC031219|LIPJ|142910|lipase, family member J##NM_001010939|LIPJ|142910|lipase, family member J##NM_001198828|LIPF|8513|lipase, gastric##NM_001198829|LIPF|8513|lipase, gastric##NM_001198830|LIPF|8513|lipase, gastric##NM_004190|LIPF|8513|lipase, gastric##AK301310|LIPF|8513|lipase, gastric##AK301320|LIPF|8513|lipase, gastric##AK308224|LIPF|8513|lipase, gastric##AK310128|LIPF|8513|lipase, gastric##AK312940|LIPF|8513|lipase, gastric##AK223468|LIPF|8513|lipase, gastric##AL833751|LIPF|8513|lipase, gastric##X05997|LIPF|8513|lipase, gastric	0.6634	0.0	denovo_WM_7:17:0.632
chr7	130646080	130646238	reg1001762.p1	10.380	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-227232	-	AF294347 AF431815 BC038415 NM_052933	-274804	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-292564	-	TSC_hg19_v1_chr7_-_130792857 BC047367	146700	-	AK294384 NM_001145354	148695	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	366447	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	0.90908	0.013513	denovo_WM_7:-5:0.244	denovo_WM_7:-7:0.435
chrX	115055594	115055723	reg1002089.p1	10.375	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-227790	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-258616	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-260052	+	BC003645 TSC_hg19_v1_chrX_-_115085443	29781	-	AK313927 NM_000686 X87723 U16957	246337	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	512109	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chr8	146011169	146011307	reg1001223.p1	10.374	+	TSC_hg19_v1_chr8_-_145980977 NM_138367	-30264	-	TSC_hg19_v1_chr8_-_145980846 AK000435	-30384	-	TSC_hg19_v1_chr8_-_145911232 AK296353	-100011	-	TSC_hg19_v1_chr8_-_146012703 BC004480 AL833814 AK096508 NM_030580	1462	-	TSC_hg19_v1_chr8_-_146017753 BC012197 NM_033301 BC013104 BC000077	6502	-	AK301073 D28421 TSC_hg19_v1_chr8_-_146017776	6538	-	NM_138367|ZNF251|90987|zinc finger protein 251##AK000435|ZNF251|90987|zinc finger protein 251##AK296353|ARHGAP39|80728|Rho GTPase activating protein 39##BC004480|ZNF34|80778|zinc finger protein 34##AL833814|ZNF34|80778|zinc finger protein 34##AK096508|ZNF34|80778|zinc finger protein 34##NM_030580|ZNF34|80778|zinc finger protein 34##BC012197|RPL8|6132|ribosomal protein L8##NM_033301|RPL8|6132|ribosomal protein L8##BC013104|RPL8|6132|ribosomal protein L8##BC000077|RPL8|6132|ribosomal protein L8##AK301073|RPL8|6132|ribosomal protein L8	0.0	0.0	
chr5	17225293	17225465	reg1001838.p2	10.373	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-7539	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-7767	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-288994	-	AK295087 BC031051 NM_001167667 NM_004934	2762943	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4234230	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4234269	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.089236	0.0	
chr5	151129186	151129351	reg1001751.p1	10.372	+	TSC_hg19_v1_chr5_-_151066495 AK096969 AK299441 AK315591 D28381 BC072457 NM_003118	-62760	-	Y00755 BC004974 J03040 TSC_hg19_v1_chr5_-_151066477	-62807	-	AF231022 NM_001447	-180764	-	TSC_hg19_v1_chr5_-_151138170 AK091843 AX747215 NM_004045 AK293063 BC112248 BC112250	8947	-	TSC_hg19_v1_chr5_-_151150991 AB593120	21705	-	TSC_hg19_v1_chr5_+_151151479 BX648012 NM_005754 NM_198395	22204	+	AK096969|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK299441|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK315591|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##D28381|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC072457|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##NM_003118|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##Y00755|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC004974|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##J03040|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AF231022|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##NM_001447|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##AK091843|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##NM_004045|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK293063|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112248|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112250|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AB593120|LOC100652758|100652758|uncharacterized LOC100652758##BX648012|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_005754|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_198395|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1	1.991228	0.0	denovo_WM_7:-20:0.900	denovo_WM_7:-37:0.820
chr2	136889140	136889299	reg1001865.p1	10.367	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-13543	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-15421	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-146003	-	TSC_hg19_v1_chr2_+_137523114 AK299929	633897	+	NM_001080427	859242	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1832715	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	1.045639	0.012516	denovo_WM_7:-36:0.620
chr11	130139518	130139698	reg1001533.p1	10.366	+	TSC_hg19_v1_chr11_+_130029782 AF118224 AF133086 AF057145 AB030036 DQ891626 DQ894442 AB528443 CU688892	-109785	+	TSC_hg19_v1_chr11_+_130029713 BC030532	-109867	+	AK314173 TSC_hg19_v1_chr11_+_130029706	-109904	+	TSC_hg19_v1_chr11_-_130184330 AF161548	44723	-	TSC_hg19_v1_chr11_+_130184331 AK091840 AX747213	44764	+	TSC_hg19_v1_chr11_-_130184509 AK314701 BC030580 BC049375 BC071729 NM_014155	44924	-	AF118224|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AF133086|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AF057145|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AB030036|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##DQ891626|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##DQ894442|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##BC030532|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AK314173|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AF161548|ZBTB44|29068|zinc finger and BTB domain containing 44##AK091840|FLJ34521|646383|uncharacterized LOC646383##AK314701|ZBTB44|29068|zinc finger and BTB domain containing 44##BC030580|ZBTB44|29068|zinc finger and BTB domain containing 44##BC049375|ZBTB44|29068|zinc finger and BTB domain containing 44##BC071729|ZBTB44|29068|zinc finger and BTB domain containing 44##NM_014155|ZBTB44|29068|zinc finger and BTB domain containing 44	0.049811	0.0	
chr9	115571821	115571938	reg1001476.p1	10.366	+	TSC_hg19_v1_chr9_+_115513056 NM_001012994	-58788	+	TSC_hg19_v1_chr9_-_115480398 BC065210 AK310007 BC014881 NM_021218 AK000637	-91491	-	AF161411 TSC_hg19_v1_chr9_-_115480339 AF161409	-91541	-	TSC_hg19_v1_chr9_+_115631819 AK129991	59986	+	CU690566 BC048285 AK314414 AK055571 AF242557 NM_033051	81197	-	AK095843 NM_001101338	202592	-	NM_001012994|SNX30|401548|sorting nexin family member 30##BC065210|C9orf80|58493|chromosome 9 open reading frame 80##AK310007|C9orf80|58493|chromosome 9 open reading frame 80##BC014881|C9orf80|58493|chromosome 9 open reading frame 80##NM_021218|C9orf80|58493|chromosome 9 open reading frame 80##AK000637|C9orf80|58493|chromosome 9 open reading frame 80##AF161411|C9orf80|58493|chromosome 9 open reading frame 80##AF161409|C9orf80|58493|chromosome 9 open reading frame 80##AK129991|SNX30|401548|sorting nexin family member 30##BC048285|SLC46A2|57864|solute carrier family 46, member 2##AK314414|SLC46A2|57864|solute carrier family 46, member 2##AK055571|SLC46A2|57864|solute carrier family 46, member 2##AF242557|SLC46A2|57864|solute carrier family 46, member 2##NM_033051|SLC46A2|57864|solute carrier family 46, member 2##AK095843|ZNF883|169834|zinc finger protein 883##NM_001101338|ZNF883|169834|zinc finger protein 883	0.983454	0.0	denovo_WM_7:-25:0.913
chr1	95428403	95428560	reg1001777.p2	10.364	+	TSC_hg19_v1_chr1_-_95392690 S80562 BC025372 AK312370 AK298145 NM_001839	-35841	-	CR541848 CU692978 DQ893013 DQ896258 TSC_hg19_v1_chr1_-_95392498	-36008	-	TSC_hg19_v1_chr1_+_95286194 AK300193	-142282	+	TSC_hg19_v1_chr1_-_95538474 BC011706 AK289395 NM_144988	110005	-	BC108263 NM_001199679	129591	+	TSC_hg19_v1_chr1_+_95582939 NM_152487 AK056404 BC137457 BC137458 BC139737	154479	+	S80562|CNN3|1266|calponin 3, acidic##BC025372|CNN3|1266|calponin 3, acidic##AK312370|CNN3|1266|calponin 3, acidic##AK298145|CNN3|1266|calponin 3, acidic##NM_001839|CNN3|1266|calponin 3, acidic##CR541848|CNN3|1266|calponin 3, acidic##DQ893013|CNN3|1266|calponin 3, acidic##DQ896258|CNN3|1266|calponin 3, acidic##AK300193|SLC44A3|126969|solute carrier family 44, member 3##BC011706|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##AK289395|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##NM_144988|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##BC108263|TMEM56|148534|transmembrane protein 56##NM_001199679|TMEM56|148534|transmembrane protein 56##NM_152487|TMEM56|148534|transmembrane protein 56##AK056404|TMEM56|148534|transmembrane protein 56##BC137457|TMEM56|148534|transmembrane protein 56##BC137458|TMEM56|148534|transmembrane protein 56##BC139737|TMEM56|148534|transmembrane protein 56	0.998559	0.0	denovo_WM_7:-17:0.772
chr10	30717311	30717458	reg1002410.p1	10.362	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-79151	-	TSC_hg19_v1_chr10_-_30348516 AK308850 NM_020848 BC071601	-368890	-	TSC_hg19_v1_chr10_-_30316350 BC047548	-400953	-	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	5555	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	5737	+	AF139543 BC066294 NM_183058	201251	-	AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AK308850|KIAA1462|57608|KIAA1462##NM_020848|KIAA1462|57608|KIAA1462##BC071601|KIAA1462|57608|KIAA1462##BC047548|KIAA1462|57608|KIAA1462##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2	0.998994	0.0	denovo_WM_7:20:0.310	denovo_WM_7:21:0.310	denovo_WM_7:22:0.310
chr8	129009192	129009362	reg1001961.p2	10.362	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-202494	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-260787	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-260952	+	AB042405 NM_031415	1789856	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1942638	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1942729	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.99113	0.0	denovo_WM_7:21:0.231	denovo_WM_7:22:0.657
chr6	109226077	109226225	reg1001982.p2	10.359	+	TSC_hg19_v1_chr6_+_109169624 AK294574 NM_032131 AK292499 BC030603	-56530	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	-343894	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	-344076	+	AF033121 NM_001199934	104039	-	TSC_hg19_v1_chr6_-_109330747 AF033120	104565	-	TSC_hg19_v1_chr6_-_109330756 AK290551 NM_001199933	104613	-	AK294574|ARMC2|84071|armadillo repeat containing 2##NM_032131|ARMC2|84071|armadillo repeat containing 2##AK292499|ARMC2|84071|armadillo repeat containing 2##BC030603|ARMC2|84071|armadillo repeat containing 2##AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##AF033121|SESN1|27244|sestrin 1##NM_001199934|SESN1|27244|sestrin 1##AF033120|SESN1|27244|sestrin 1##AK290551|SESN1|27244|sestrin 1##NM_001199933|SESN1|27244|sestrin 1	0.0	0.0	
chr7	5405827	5405934	reg1001105.p1	10.359	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	-83274	+	BC016912 AF151808 NM_001033520 AY691426	-151988	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-175895	+	TSC_hg19_v1_chr7_-_5460842 BC140723	55026	-	AY129022 TSC_hg19_v1_chr7_-_5461555	55661	-	NM_001080495	57296	-	AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY129022|TNRC18|84629|trinucleotide repeat containing 18##NM_001080495|TNRC18|84629|trinucleotide repeat containing 18	1.311589	0.993169	CTCF.p2:-43:0.993
chr11	303473	303611	reg1001436.p1	10.358	+	BC150562 BC150563 NM_001025295	-4021	-	TSC_hg19_v1_chr11_+_289125 AK074155 NM_025092 BC066641	-14400	+	AF479748 AY154461 NM_138329	-24973	+	NM_006435 TSC_hg19_v1_chr11_+_308199 BC009696 DQ891667 DQ894615 BT009859 CR456894 CR541874 X02490	4628	+	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	10469	+	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	17302	-	BC150562|IFITM5|387733|interferon induced transmembrane protein 5##BC150563|IFITM5|387733|interferon induced transmembrane protein 5##NM_001025295|IFITM5|387733|interferon induced transmembrane protein 5##AK074155|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##NM_025092|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC066641|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##AF479748|NLRP6|171389|NLR family, pyrin domain containing 6##AY154461|NLRP6|171389|NLR family, pyrin domain containing 6##NM_138329|NLRP6|171389|NLR family, pyrin domain containing 6##NM_006435|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BC009696|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##DQ891667|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##DQ894615|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BT009859|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##CR456894|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##CR541874|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##X02490|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3	1.321198	0.0	denovo_WM_7:-25:0.226	denovo_WM_7:-41:0.972
chr11	7541673	7541812	reg1001893.p1	10.357	+	TSC_hg19_v1_chr11_+_7535229 AK001131 AK308398	-6499	+	NM_003621 BC021714 TSC_hg19_v1_chr11_+_7535171	-6639	+	NM_198474 BX647908 BC092488 TSC_hg19_v1_chr11_+_7506763 AK298137 BC035895 AK297778	-35025	+	AK296718 TSC_hg19_v1_chr11_+_7618421	76676	+	AB209000 BC001346 AF169802 NM_016229	153010	-	NM_198185	186198	-	AK001131|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##AK308398|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##NM_003621|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##BC021714|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##NM_198474|OLFML1|283298|olfactomedin-like 1##BX647908|OLFML1|283298|olfactomedin-like 1##BC092488|OLFML1|283298|olfactomedin-like 1##AK298137|OLFML1|283298|olfactomedin-like 1##BC035895|OLFML1|283298|olfactomedin-like 1##AK297778|OLFML1|283298|olfactomedin-like 1##AK296718|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##AB209000|CYB5R2|51700|cytochrome b5 reductase 2##BC001346|CYB5R2|51700|cytochrome b5 reductase 2##AF169802|CYB5R2|51700|cytochrome b5 reductase 2##NM_016229|CYB5R2|51700|cytochrome b5 reductase 2##NM_198185|OVCH2|341277|ovochymase 2 (gene/pseudogene)	0.998694	0.0	denovo_WM_7:2:0.477	denovo_WM_7:3:0.477
chr14	55030866	55030997	reg1002018.p1	10.355	+	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	-54320	+	TSC_hg19_v1_chr14_-_54955728 AB001106 BX647679 NM_004124	-75176	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	-75246	-	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	3413	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	3705	+	TSC_hg19_v1_chr14_+_55168831 AB028976	137958	+	AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##AB001106|GMFB|2764|glia maturation factor, beta##BX647679|GMFB|2764|glia maturation factor, beta##NM_004124|GMFB|2764|glia maturation factor, beta##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta##NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A	0.989698	0.996725	denovo_WM_7:15:0.770	CTCF.p2:-23:0.997
chr11	67250204	67250364	reg1001338.p1	10.352	+	AK310743 TSC_hg19_v1_chr11_-_67236717 AK296988 AY007143 BC013883 BC051854 BC125134 AK303342 NM_001078650 NM_001078651 NM_025124 AK025402	-13583	-	AY039217 NM_145200	-27467	+	AY569571 BC119779 BC122869 NM_206997	-30085	-	NM_003977 TSC_hg19_v1_chr11_+_67250510 U78521	228	+	TSC_hg19_v1_chr11_+_67250595 BC104797 BC104827 U31913 AB529203 EU446613	328	+	X98654 TSC_hg19_v1_chr11_-_67271900	21590	-	AK310743|TMEM134|80194|transmembrane protein 134##AK296988|TMEM134|80194|transmembrane protein 134##AY007143|TMEM134|80194|transmembrane protein 134##BC013883|TMEM134|80194|transmembrane protein 134##BC051854|TMEM134|80194|transmembrane protein 134##BC125134|TMEM134|80194|transmembrane protein 134##AK303342|TMEM134|80194|transmembrane protein 134##NM_001078650|TMEM134|80194|transmembrane protein 134##NM_001078651|TMEM134|80194|transmembrane protein 134##NM_025124|TMEM134|80194|transmembrane protein 134##AK025402|TMEM134|80194|transmembrane protein 134##AY039217|CABP4|57010|calcium binding protein 4##NM_145200|CABP4|57010|calcium binding protein 4##AY569571|GPR152|390212|G protein-coupled receptor 152##BC119779|GPR152|390212|G protein-coupled receptor 152##BC122869|GPR152|390212|G protein-coupled receptor 152##NM_206997|GPR152|390212|G protein-coupled receptor 152##NM_003977|AIP|9049|aryl hydrocarbon receptor interacting protein##U78521|AIP|9049|aryl hydrocarbon receptor interacting protein##BC104797|AIP|9049|aryl hydrocarbon receptor interacting protein##BC104827|AIP|9049|aryl hydrocarbon receptor interacting protein##U31913|AIP|9049|aryl hydrocarbon receptor interacting protein##EU446613|AIP|9049|aryl hydrocarbon receptor interacting protein##X98654|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1	0.995118	0.0	denovo_WM_7:-45:0.702
chr11	75619713	75619890	reg1001988.p2	10.351	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-93523	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-93579	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-139878	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	297711	-	TSC_hg19_v1_chr11_-_75921806 AK075540	302003	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	472207	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	1.663393	0.0	denovo_WM_7:-23:0.656	denovo_WM_7:-38:0.661
chr10	32667734	32667875	reg1001902.p4	10.349	+	AF286905 AK309309 AK299676 TSC_hg19_v1_chr10_-_32667698	-167	-	TSC_hg19_v1_chr10_-_32636137 BC036529 CR749375	-31655	-	TSC_hg19_v1_chr10_-_32636116 AF277374 FJ230887 NM_025209	-31696	-	TSC_hg19_v1_chr10_+_32735092 NM_001026383 NM_145023 AK057324 BC042672 BC022020	67258	+	AK023093 NM_024688 BC125090 BC125091	188902	+	AB463074 AM393197 CU676490 DQ891069 DQ894251 NM_033668	556681	-	AF286905|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309309|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK299676|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##BC036529|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##CR749375|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF277374|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_025209|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_001026383|CCDC7|221016|coiled-coil domain containing 7##NM_145023|CCDC7|221016|coiled-coil domain containing 7##AK057324|CCDC7|221016|coiled-coil domain containing 7##BC042672|CCDC7|221016|coiled-coil domain containing 7##BC022020|CCDC7|221016|coiled-coil domain containing 7##AK023093|C10orf68|79741|chromosome 10 open reading frame 68##NM_024688|C10orf68|79741|chromosome 10 open reading frame 68##BC125090|C10orf68|79741|chromosome 10 open reading frame 68##BC125091|C10orf68|79741|chromosome 10 open reading frame 68##AM393197|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##DQ891069|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##DQ894251|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##NM_033668|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	0.0	0.0	
chr11	48128747	48128891	reg1002022.p1	10.345	+	TSC_hg19_v1_chr11_+_48002270 AL359057 BC063417	-126460	+	D37781 TSC_hg19_v1_chr11_+_48002120	-126699	+	TSC_hg19_v1_chr11_+_48002110 NM_001098503 NM_002843 U10886	-126728	+	NM_001005470	109542	+	BC136935 BC136936 NM_001004727	137812	+	NM_001004726	156593	+	AL359057|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##BC063417|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##D37781|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_001098503|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_002843|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##U10886|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_001005470|OR4B1|119765|olfactory receptor, family 4, subfamily B, member 1##BC136935|OR4X2|119764|olfactory receptor, family 4, subfamily X, member 2##BC136936|OR4X2|119764|olfactory receptor, family 4, subfamily X, member 2##NM_001004727|OR4X2|119764|olfactory receptor, family 4, subfamily X, member 2##NM_001004726|OR4X1|390113|olfactory receptor, family 4, subfamily X, member 1	0.972364	0.0	denovo_WM_7:-8:0.314
chr10	63510864	63511021	reg1001771.p1	10.343	+	BC041932 NM_173554	-88224	+	CR749606 NM_178505	-297735	-	BC042872 TSC_hg19_v1_chr10_-_63212971 AK125611	-297983	-	NM_032199	150070	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	150489	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	298154	+	BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##CR749606|TMEM26|219623|transmembrane protein 26##NM_178505|TMEM26|219623|transmembrane protein 26##BC042872|TMEM26|219623|transmembrane protein 26##AK125611|TMEM26|219623|transmembrane protein 26##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)	0.987857	0.503382	CTCF.p2:-57:0.503
chr2	20351213	20351334	reg1001835.p1	10.341	+	NM_014713	-99485	-	TSC_hg19_v1_chr2_-_20251415 AY359028 D14696 BC003158 AK129875	-99846	-	CR456758 TSC_hg19_v1_chr2_-_20251382 BC000421 AK304433 BC093075	-99935	-	X60306 AB464260 CU679093 DQ893265 DQ896595 TSC_hg19_v1_chr2_-_20424892 AK299385 J05392 AK313974 AK222739 BC008765 AJ551176 AK311409 NM_002997	73514	-	TSC_hg19_v1_chr2_-_20425168 NM_001006946	73906	-	AF272350 TSC_hg19_v1_chr2_-_20512079	160776	-	NM_014713|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AY359028|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##D14696|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC003158|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK129875|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##CR456758|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC000421|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK304433|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC093075|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##X60306|SDC1|6382|syndecan 1##DQ893265|SDC1|6382|syndecan 1##DQ896595|SDC1|6382|syndecan 1##AK299385|SDC1|6382|syndecan 1##J05392|SDC1|6382|syndecan 1##AK313974|SDC1|6382|syndecan 1##AK222739|SDC1|6382|syndecan 1##BC008765|SDC1|6382|syndecan 1##AJ551176|SDC1|6382|syndecan 1##NM_002997|SDC1|6382|syndecan 1##NM_001006946|SDC1|6382|syndecan 1##AF272350|PUM2|23369|pumilio homolog 2 (Drosophila)	0.993276	0.0	denovo_WM_7:42:0.248	denovo_WM_7:43:0.248	denovo_WM_7:44:0.248	denovo_WM_7:45:0.248
chr11	113710677	113710831	reg1001974.p2	10.340	+	TSC_hg19_v1_chr11_+_113659972 AK093353 AX748073	-50806	+	NM_001101389	-60237	+	TSC_hg19_v1_chr11_-_113644486 NM_004724	-66270	-	TSC_hg19_v1_chr11_-_113746251 CU688104 AF266283 BC065928 AK304376 NM_020886 AK304770 AK097623	35537	-	AK314268 NM_006028 AF169255 AF080582 AB463385	64832	+	AK304630 NM_000869 NM_213621 D49394 AK313896 BC004453 BC002354 AJ003078 AJ003079 AJ003080 BT007204 AB587356 AF498984 CU677922 DQ892003 DQ895193	135167	+	AK093353|LOC390251|390251|SH3-domain GRB2-like 1 pseudogene##NM_001101389|CLDN25|644672|claudin 25##NM_004724|ZW10|9183|ZW10, kinetochore associated, homolog (Drosophila)##AF266283|USP28|57646|ubiquitin specific peptidase 28##BC065928|USP28|57646|ubiquitin specific peptidase 28##AK304376|USP28|57646|ubiquitin specific peptidase 28##NM_020886|USP28|57646|ubiquitin specific peptidase 28##AK304770|USP28|57646|ubiquitin specific peptidase 28##AK097623|USP28|57646|ubiquitin specific peptidase 28##AK314268|HTR3B|9177|5-hydroxytryptamine (serotonin) receptor 3B##NM_006028|HTR3B|9177|5-hydroxytryptamine (serotonin) receptor 3B##AF169255|HTR3B|9177|5-hydroxytryptamine (serotonin) receptor 3B##AF080582|HTR3B|9177|5-hydroxytryptamine (serotonin) receptor 3B##AK304630|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##NM_000869|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##NM_213621|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##D49394|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##AK313896|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##BC004453|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##BC002354|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##AJ003078|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##AJ003079|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##AJ003080|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##BT007204|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##AF498984|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##DQ892003|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A##DQ895193|HTR3A|3359|5-hydroxytryptamine (serotonin) receptor 3A	0.958825	0.0	denovo_WM_7:-9:0.331
chr2	152628099	152628241	reg1002324.p1	10.340	+	TSC_hg19_v1_chr2_-_152590990 AK096903 AK307607 BC029384 BC012533 BC056251 BC105590 NM_001164507 NM_001164508 NM_004543	-37179	-	AY727912 NM_001177665 TSC_hg19_v1_chr2_+_152266674	-361532	+	TSC_hg19_v1_chr2_+_152266419 AY727910 AY727913 NM_001177663 NM_018151 AY727911 NM_001177664 AK299572 AK299291 BX648324 AY585745 CR933663	-361740	+	AB528315 AF493891 BT009829 DQ891193 DQ894376 TSC_hg19_v1_chr2_-_152684707 AF100740	56551	-	TSC_hg19_v1_chr2_-_152684901 AK292714 BC001254	56733	-	TSC_hg19_v1_chr2_-_152684936 AF087889 AK298937	56776	-	AK096903|NEB|4703|nebulin##AK307607|NEB|4703|nebulin##BC029384|NEB|4703|nebulin##BC012533|NEB|4703|nebulin##BC056251|NEB|4703|nebulin##BC105590|NEB|4703|nebulin##NM_001164507|NEB|4703|nebulin##NM_001164508|NEB|4703|nebulin##NM_004543|NEB|4703|nebulin##AY727912|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177665|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727910|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727913|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177663|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_018151|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727911|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177664|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK299572|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK299291|RIF1|55183|RAP1 interacting factor homolog (yeast)##BX648324|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY585745|RIF1|55183|RAP1 interacting factor homolog (yeast)##CR933663|RIF1|55183|RAP1 interacting factor homolog (yeast)##AF493891|ARL5A|26225|ADP-ribosylation factor-like 5A##BT009829|ARL5A|26225|ADP-ribosylation factor-like 5A##DQ891193|ARL5A|26225|ADP-ribosylation factor-like 5A##DQ894376|ARL5A|26225|ADP-ribosylation factor-like 5A##AF100740|ARL5A|26225|ADP-ribosylation factor-like 5A##AK292714|ARL5A|26225|ADP-ribosylation factor-like 5A##BC001254|ARL5A|26225|ADP-ribosylation factor-like 5A##AF087889|ARL5A|26225|ADP-ribosylation factor-like 5A##AK298937|ARL5A|26225|ADP-ribosylation factor-like 5A	0.714423	0.0	denovo_WM_7:-26:0.565
chr12	65019154	65019306	reg1001853.p2	10.339	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-14969	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-173337	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-215452	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	133867	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	133929	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	133954	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.996727	0.0	denovo_WM_7:2:0.527	denovo_WM_7:3:0.470
chr3	160117303	160117431	reg1001852.p1	10.339	+	AK303410 AK125342 NM_001190241 NM_020800	-51	-	BC101494 BC113669 TSC_hg19_v1_chr3_-_160117005 AK055904 BC030774	-374	-	AB037795 NM_001190242	-15869	-	BC106033 TSC_hg19_v1_chr3_+_160117423 NM_001002800 AK002200 AK128143 AK225437 AK315070 BC070161 AB019987 AK307508	63	+	TSC_hg19_v1_chr3_+_160117456 BC065259 AL833949 BC001557	104	+	NM_005496 AL136877	997	+	AK303410|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##AK125342|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##NM_001190241|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##NM_020800|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##BC101494|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##BC113669|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##AK055904|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##BC030774|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##AB037795|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##NM_001190242|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##BC106033|SMC4|10051|structural maintenance of chromosomes 4##NM_001002800|SMC4|10051|structural maintenance of chromosomes 4##AK002200|SMC4|10051|structural maintenance of chromosomes 4##AK128143|SMC4|10051|structural maintenance of chromosomes 4##AK225437|SMC4|10051|structural maintenance of chromosomes 4##AK315070|SMC4|10051|structural maintenance of chromosomes 4##BC070161|SMC4|10051|structural maintenance of chromosomes 4##AB019987|SMC4|10051|structural maintenance of chromosomes 4##AK307508|SMC4|10051|structural maintenance of chromosomes 4##BC065259|SMC4|10051|structural maintenance of chromosomes 4##AL833949|SMC4|10051|structural maintenance of chromosomes 4##BC001557|SMC4|10051|structural maintenance of chromosomes 4##NM_005496|SMC4|10051|structural maintenance of chromosomes 4##AL136877|SMC4|10051|structural maintenance of chromosomes 4	0.0	0.0	
chr12	121107465	121107622	reg1002031.p2	10.338	+	AF169148 AF169149 NM_004276 NM_031205	-19173	+	BC030201 NM_001033677	-29122	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	-88355	-	TSC_hg19_v1_chr12_+_121124951 NM_014730	17395	+	TSC_hg19_v1_chr12_+_121124973 D63486 BC016297 BC000371	17496	+	CR936818 TSC_hg19_v1_chr12_+_121132759	25175	+	AF169148|CABP1|9478|calcium binding protein 1##AF169149|CABP1|9478|calcium binding protein 1##NM_004276|CABP1|9478|calcium binding protein 1##NM_031205|CABP1|9478|calcium binding protein 1##BC030201|CABP1|9478|calcium binding protein 1##NM_001033677|CABP1|9478|calcium binding protein 1##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_014730|MLEC|9761|malectin##D63486|MLEC|9761|malectin##BC016297|MLEC|9761|malectin##BC000371|MLEC|9761|malectin	0.998855	0.0	denovo_WM_7:20:0.245	denovo_WM_7:21:0.658
chr20	5630750	5630884	reg1000613.p1	10.338	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-39230	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-335781	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-523122	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	100249	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	261309	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	300306	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.279953	0.0	denovo_WM_7:0:0.269
chr20	3887664	3887844	reg1001977.p1	10.337	+	NM_153640 BC107724 BC065019	-17265	+	TSC_hg19_v1_chr20_+_3870042 AK310190 AK097796 BC142976 BC009421	-17698	+	TSC_hg19_v1_chr20_-_3869721 BC005095 BC012193	-18036	-	AL096778 NM_007219 BC039584 TSC_hg19_v1_chr20_-_3996221 BC000213 BC003141 NM_001134337 NM_001134338 BC032738	108411	-	TSC_hg19_v1_chr20_+_4129438 NM_175839 NM_175840 NM_175841 NM_175842	241681	+	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	241769	+	NM_153640|PANK2|80025|pantothenate kinase 2##BC107724|PANK2|80025|pantothenate kinase 2##BC065019|PANK2|80025|pantothenate kinase 2##AK310190|PANK2|80025|pantothenate kinase 2##AK097796|PANK2|80025|pantothenate kinase 2##BC142976|PANK2|80025|pantothenate kinase 2##BC009421|PANK2|80025|pantothenate kinase 2##AL096778|RNF24|11237|ring finger protein 24##NM_007219|RNF24|11237|ring finger protein 24##BC039584|RNF24|11237|ring finger protein 24##BC000213|RNF24|11237|ring finger protein 24##NM_001134337|RNF24|11237|ring finger protein 24##NM_001134338|RNF24|11237|ring finger protein 24##NM_175839|SMOX|54498|spermine oxidase##NM_175840|SMOX|54498|spermine oxidase##NM_175841|SMOX|54498|spermine oxidase##NM_175842|SMOX|54498|spermine oxidase##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase	0.998839	0.0	
chr7	75395318	75395498	reg1001559.p3	10.335	+	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	-27098	-	AF365404 AB385224 TSC_hg19_v1_chr7_-_75368255 AK094866 AK304738 BC110545	-27168	-	BC101598 BC143635 BC087844 BC022886 BC007683 BC014421 BC029646 TSC_hg19_v1_chr7_-_75157432 BC046153	-238223	-	NM_006072 AY358893	23730	-	AJ223461 BC069072 BC069391 NM_002991 U85768 AB590965 CU686790	47621	-	AF226732 TSC_hg19_v1_chr7_+_75508369 NM_001040456 NM_001040457 BC069017 AK026590	112926	+	AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##AF365404|HIP1|3092|huntingtin interacting protein 1##AK094866|HIP1|3092|huntingtin interacting protein 1##AK304738|HIP1|3092|huntingtin interacting protein 1##BC110545|HIP1|3092|huntingtin interacting protein 1##BC101598|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC143635|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC087844|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC007683|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC014421|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC046153|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26##AJ223461|CCL24|6369|chemokine (C-C motif) ligand 24##BC069072|CCL24|6369|chemokine (C-C motif) ligand 24##BC069391|CCL24|6369|chemokine (C-C motif) ligand 24##NM_002991|CCL24|6369|chemokine (C-C motif) ligand 24##U85768|CCL24|6369|chemokine (C-C motif) ligand 24##AF226732|RHBDD2|57414|rhomboid domain containing 2##NM_001040456|RHBDD2|57414|rhomboid domain containing 2##NM_001040457|RHBDD2|57414|rhomboid domain containing 2##BC069017|RHBDD2|57414|rhomboid domain containing 2##AK026590|RHBDD2|57414|rhomboid domain containing 2	0.996292	0.0	
chr14	35400106	35400261	reg1001879.p1	10.333	+	AB032252 NM_013448 NM_182648	-55331	-	TSC_hg19_v1_chr14_-_35344546 AF161435	-55646	-	TSC_hg19_v1_chr14_-_35344525 BC108711	-55676	-	NM_001146282 NM_003136 TSC_hg19_v1_chr14_+_35452178 AK312853	51960	+	TSC_hg19_v1_chr14_+_35452224 AK293319 AK300824 BC003389 BC000652 U51920	52105	+	NM_001079519	113929	+	AB032252|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_013448|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_182648|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF161435|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##BC108711|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_001146282|SRP54|6729|signal recognition particle 54kDa##NM_003136|SRP54|6729|signal recognition particle 54kDa##AK312853|SRP54|6729|signal recognition particle 54kDa##AK293319|SRP54|6729|signal recognition particle 54kDa##AK300824|SRP54|6729|signal recognition particle 54kDa##BC003389|SRP54|6729|signal recognition particle 54kDa##BC000652|SRP54|6729|signal recognition particle 54kDa##U51920|SRP54|6729|signal recognition particle 54kDa##NM_001079519|FAM177A1|283635|family with sequence similarity 177, member A1	1.956884	0.0	denovo_WM_7:22:0.439	denovo_WM_7:23:0.267	denovo_WM_7:37:0.205	denovo_WM_7:38:0.395	denovo_WM_7:39:0.271
chr3	33759965	33760102	reg1001473.p2	10.332	+	TSC_hg19_v1_chr3_-_33759747 AK091451 AX746992	-238	-	TSC_hg19_v1_chr3_-_33759706 NM_015097	-338	-	BC140778 TSC_hg19_v1_chr3_-_33759667	-429	-	TSC_hg19_v1_chr3_+_33840062 NM_001162429 NM_013374	80030	+	TSC_hg19_v1_chr3_+_33840081 BC068454 AF349951	80050	+	TSC_hg19_v1_chr3_+_33840120 AF151793 BC020066	80074	+	AK091451|CLASP2|23122|cytoplasmic linker associated protein 2##NM_015097|CLASP2|23122|cytoplasmic linker associated protein 2##BC140778|CLASP2|23122|cytoplasmic linker associated protein 2##NM_001162429|PDCD6IP|10015|programmed cell death 6 interacting protein##NM_013374|PDCD6IP|10015|programmed cell death 6 interacting protein##BC068454|PDCD6IP|10015|programmed cell death 6 interacting protein##AF349951|PDCD6IP|10015|programmed cell death 6 interacting protein##AF151793|PDCD6IP|10015|programmed cell death 6 interacting protein##BC020066|PDCD6IP|10015|programmed cell death 6 interacting protein	1.784055	0.0	denovo_WM_7:5:0.228	denovo_WM_7:6:0.228	denovo_WM_7:7:0.228	denovo_WM_7:8:0.228	denovo_WM_7:78:0.613
chr2	157383697	157383877	reg1000443.p1	10.329	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-90833	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-90921	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-91553	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	730506	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	798497	-	NM_001009959 AK296477	800369	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	0.259676	0.0	denovo_WM_7:-16:0.209
chr5	141799612	141799792	reg1002141.p2	10.329	+	TSC_hg19_v1_chr5_-_141704587 AK096464 NM_001127496 NM_030964	-95068	-	BC125095 BC125096 TSC_hg19_v1_chr5_-_141704555 AF227516 AF227517	-95182	-	TSC_hg19_v1_chr5_+_141488389 AB097010 AB097037 BC004317	-311292	+	S67291 S67292 S67294 AB528663 X65778 X65779 M13361 NM_033137 X51943	194006	-	L01487 BC032697 NM_001144892	201200	-	M60516 NM_000800	265917	-	AK096464|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_001127496|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_030964|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125095|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125096|SPRY4|81848|sprouty homolog 4 (Drosophila)##AF227516|SPRY4|81848|sprouty homolog 4 (Drosophila)##AB097010|NDFIP1|80762|Nedd4 family interacting protein 1##AB097037|NDFIP1|80762|Nedd4 family interacting protein 1##BC004317|NDFIP1|80762|Nedd4 family interacting protein 1##S67291|FGF1|2246|fibroblast growth factor 1 (acidic)##S67292|FGF1|2246|fibroblast growth factor 1 (acidic)##S67294|FGF1|2246|fibroblast growth factor 1 (acidic)##X65778|FGF1|2246|fibroblast growth factor 1 (acidic)##X65779|FGF1|2246|fibroblast growth factor 1 (acidic)##M13361|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_033137|FGF1|2246|fibroblast growth factor 1 (acidic)##X51943|FGF1|2246|fibroblast growth factor 1 (acidic)##L01487|FGF1|2246|fibroblast growth factor 1 (acidic)##BC032697|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144892|FGF1|2246|fibroblast growth factor 1 (acidic)##M60516|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_000800|FGF1|2246|fibroblast growth factor 1 (acidic)	0.994629	0.0	
chr6	13747941	13748067	reg1001815.p1	10.329	+	BC052781 TSC_hg19_v1_chr6_-_13711955	-36030	-	TSC_hg19_v1_chr6_-_13711730 AB055311 NM_005493	-36269	-	AB008515 TSC_hg19_v1_chr6_-_13711498	-36513	-	BC008234 TSC_hg19_v1_chr6_-_13814790 BC016850 NM_001031713 AK024611	66764	-	NM_001165034	176672	+	NM_001165032 NM_152737 TSC_hg19_v1_chr6_+_13925202 AK315528 BC030666 BC050030	177162	+	BC052781|RANBP9|10048|RAN binding protein 9##AB055311|RANBP9|10048|RAN binding protein 9##NM_005493|RANBP9|10048|RAN binding protein 9##AB008515|RANBP9|10048|RAN binding protein 9##BC008234|CCDC90A|63933|coiled-coil domain containing 90A##BC016850|CCDC90A|63933|coiled-coil domain containing 90A##NM_001031713|CCDC90A|63933|coiled-coil domain containing 90A##AK024611|CCDC90A|63933|coiled-coil domain containing 90A##NM_001165034|RNF182|221687|ring finger protein 182##NM_001165032|RNF182|221687|ring finger protein 182##NM_152737|RNF182|221687|ring finger protein 182##AK315528|RNF182|221687|ring finger protein 182##BC030666|RNF182|221687|ring finger protein 182##BC050030|RNF182|221687|ring finger protein 182	1.040135	0.0	
chr12	4093138	4093316	reg1001677.p1	10.328	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-110727	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-230845	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-230959	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	289817	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	337164	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	395573	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	2.971596	0.0	denovo_WM_7:57:0.297	denovo_WM_7:58:0.231	denovo_WM_7:93:0.233	denovo_WM_7:94:0.299
chr17	79527846	79527995	reg1002123.p1	10.327	+	TSC_hg19_v1_chr17_-_79519415 AK024644 BC008883 DQ989324 NM_025161	-8521	-	AL834374 TSC_hg19_v1_chr17_-_79514725	-13226	-	NM_001077182 NM_012418 AF030165 BC126295 BC130330 HQ258429	-32434	+	DQ895356 TSC_hg19_v1_chr17_-_79604087 AB040932 AK000664	76103	-	TSC_hg19_v1_chr17_-_79604107 AK294473	76182	-	TSC_hg19_v1_chr17_-_79604120 BC025930	76198	-	AK024644|C17orf70|80233|chromosome 17 open reading frame 70##BC008883|C17orf70|80233|chromosome 17 open reading frame 70##DQ989324|C17orf70|80233|chromosome 17 open reading frame 70##NM_025161|C17orf70|80233|chromosome 17 open reading frame 70##AL834374|C17orf70|80233|chromosome 17 open reading frame 70##NM_001077182|FSCN2|25794|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)##NM_012418|FSCN2|25794|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)##AF030165|FSCN2|25794|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)##BC126295|FSCN2|25794|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)##BC130330|FSCN2|25794|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)##HQ258429|FSCN2|25794|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)##DQ895356|NPLOC4|55666|nuclear protein localization 4 homolog (S. cerevisiae)##AB040932|NPLOC4|55666|nuclear protein localization 4 homolog (S. cerevisiae)##AK000664|NPLOC4|55666|nuclear protein localization 4 homolog (S. cerevisiae)##AK294473|NPLOC4|55666|nuclear protein localization 4 homolog (S. cerevisiae)##BC025930|NPLOC4|55666|nuclear protein localization 4 homolog (S. cerevisiae)	0.052908	0.0	
chr10	25201160	25201340	reg1001894.p1	10.324	+	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	-188644	-	AK307604 TSC_hg19_v1_chr10_-_25012174	-189077	-	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-445781	+	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	40282	-	CU693144 DQ892076 DQ895269 BC064597 AK095021 NM_145010 AY454125 AK292495 BC026165	103724	-	NM_024838 TSC_hg19_v1_chr10_+_25305540 AK125249 BC035132 BX647989	104300	+	AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##DQ892076|ENKUR|219670|enkurin, TRPC channel interacting protein##DQ895269|ENKUR|219670|enkurin, TRPC channel interacting protein##AK095021|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_145010|ENKUR|219670|enkurin, TRPC channel interacting protein##AY454125|ENKUR|219670|enkurin, TRPC channel interacting protein##AK292495|ENKUR|219670|enkurin, TRPC channel interacting protein##BC026165|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_024838|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##AK125249|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BC035132|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BX647989|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)	2.962046	0.0	denovo_WM_7:1:0.821	denovo_WM_7:-27:0.811	denovo_WM_7:-42:0.273	denovo_WM_7:-43:0.329	denovo_WM_7:-44:0.385
chr19	50346757	50346931	reg1002049.p1	10.323	+	TSC_hg19_v1_chr19_+_50321555 NM_030973 AK055844 AK289460 AK307330 AK298897 AF261072 AJ617479 AL136746 BC065297 AY533507 EU392500 EU392501 EU392502 EU392503 EU392504 EU392505 EU392506 EU392507 EU392508 EU392509 EU392510 EU392511 EU392512 EU392513 EU392514 EU392515 EU392516 EU392517 EU392518 EU392519 EU832505 EU832586	-25245	+	CU678728 CU679609 TSC_hg19_v1_chr19_-_50316535 BC010092 AK057964 BC004445 BC016793 AK026341 AK315445 AK295072 NM_001171937 NM_025129	-30361	-	TSC_hg19_v1_chr19_+_50304813 AK090661	-42037	+	TSC_hg19_v1_chr19_+_50353947 AK057817 AY358168 AK294366	7173	+	TSC_hg19_v1_chr19_-_50354343 AK092213	7495	-	TSC_hg19_v1_chr19_+_50354415 NM_017432	7548	+	NM_030973|MED25|81857|mediator complex subunit 25##AK055844|MED25|81857|mediator complex subunit 25##AK289460|MED25|81857|mediator complex subunit 25##AK307330|MED25|81857|mediator complex subunit 25##AK298897|MED25|81857|mediator complex subunit 25##AF261072|MED25|81857|mediator complex subunit 25##AJ617479|MED25|81857|mediator complex subunit 25##AL136746|MED25|81857|mediator complex subunit 25##BC065297|MED25|81857|mediator complex subunit 25##AY533507|MED25|81857|mediator complex subunit 25##EU392500|MED25|81857|mediator complex subunit 25##EU392501|MED25|81857|mediator complex subunit 25##EU392502|MED25|81857|mediator complex subunit 25##EU392503|MED25|81857|mediator complex subunit 25##EU392504|MED25|81857|mediator complex subunit 25##EU392505|MED25|81857|mediator complex subunit 25##EU392506|MED25|81857|mediator complex subunit 25##EU392507|MED25|81857|mediator complex subunit 25##EU392508|MED25|81857|mediator complex subunit 25##EU392509|MED25|81857|mediator complex subunit 25##EU392510|MED25|81857|mediator complex subunit 25##EU392511|MED25|81857|mediator complex subunit 25##EU392512|MED25|81857|mediator complex subunit 25##EU392513|MED25|81857|mediator complex subunit 25##EU392514|MED25|81857|mediator complex subunit 25##EU392515|MED25|81857|mediator complex subunit 25##EU392516|MED25|81857|mediator complex subunit 25##EU392517|MED25|81857|mediator complex subunit 25##EU392518|MED25|81857|mediator complex subunit 25##EU392519|MED25|81857|mediator complex subunit 25##EU832505|MED25|81857|mediator complex subunit 25##EU832586|MED25|81857|mediator complex subunit 25##BC010092|FUZ|80199|fuzzy homolog (Drosophila)##AK057964|FUZ|80199|fuzzy homolog (Drosophila)##BC004445|FUZ|80199|fuzzy homolog (Drosophila)##BC016793|FUZ|80199|fuzzy homolog (Drosophila)##AK026341|FUZ|80199|fuzzy homolog (Drosophila)##AK315445|FUZ|80199|fuzzy homolog (Drosophila)##AK295072|FUZ|80199|fuzzy homolog (Drosophila)##NM_001171937|FUZ|80199|fuzzy homolog (Drosophila)##NM_025129|FUZ|80199|fuzzy homolog (Drosophila)##AK057817|PTOV1|53635|prostate tumor overexpressed 1##AY358168|PTOV1|53635|prostate tumor overexpressed 1##AK294366|PTOV1|53635|prostate tumor overexpressed 1##AK092213|LOC100506033|100506033|uncharacterized LOC100506033##NM_017432|PTOV1|53635|prostate tumor overexpressed 1	0.878199	0.0	denovo_WM_7:56:0.242	denovo_WM_7:57:0.212	denovo_WM_7:58:0.238
chr5	130983032	130983176	reg1002398.p1	10.316	+	TSC_hg19_v1_chr5_-_130970911 BC142964 AF478567 NM_001164386 NM_001164387 NM_001164388 NM_001164389 NM_001164390 NM_016340	-12174	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	-12226	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	-12285	-	CR936723 TSC_hg19_v1_chr5_-_131132683 DQ145719 BC020539 AF117947	149558	-	TSC_hg19_v1_chr5_-_131132694 BC001956	149595	-	AK292473 TSC_hg19_v1_chr5_-_131132711	149607	-	BC142964|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478567|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164386|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164387|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164388|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164389|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164390|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_016340|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##CR936723|FNIP1|96459|folliculin interacting protein 1##DQ145719|FNIP1|96459|folliculin interacting protein 1##BC001956|FNIP1|96459|folliculin interacting protein 1##AK292473|FNIP1|96459|folliculin interacting protein 1	1.843962	0.0	denovo_WM_7:11:0.535	denovo_WM_7:12:0.459	denovo_WM_7:67:0.282	denovo_WM_7:74:0.444
chr6	52255294	52255413	reg1001615.p2	10.312	+	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	-28396	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-105774	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-105833	-	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	29725	+	AK297632 NM_001172420	30451	+	DQ891068 DQ894250 D31762 TSC_hg19_v1_chr6_-_52441798	186405	-	NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ891068|TRAM2|9697|translocation associated membrane protein 2##DQ894250|TRAM2|9697|translocation associated membrane protein 2##D31762|TRAM2|9697|translocation associated membrane protein 2	0.536707	0.0	denovo_WM_7:-19:0.537
chr14	52314185	52314364	reg1001826.p1	10.311	+	TSC_hg19_v1_chr14_+_52118627 BX161430 NM_152330 BC020521 AK315764 AK055545 BX647863	-195644	+	AL833158 NM_001042481	-358420	+	NM_030755 AB048246 TSC_hg19_v1_chr14_+_51706980 AK302416 BC036460 BC016769 BC050366 AK075395 BC032834 AK303134 AL080080 BC056874 AY358640 AK312905 DQ891674 DQ894860 CU690352	-607325	+	NM_001243773 NM_001243774 NM_053064 AK092371	12802	+	TSC_hg19_v1_chr14_+_52327329 AK307171	13049	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	13090	+	BX161430|FRMD6|122786|FERM domain containing 6##NM_152330|FRMD6|122786|FERM domain containing 6##BC020521|FRMD6|122786|FERM domain containing 6##AK315764|FRMD6|122786|FERM domain containing 6##AK055545|FRMD6|122786|FERM domain containing 6##BX647863|FRMD6|122786|FERM domain containing 6##AL833158|FRMD6|122786|FERM domain containing 6##NM_001042481|FRMD6|122786|FERM domain containing 6##NM_030755|TMX1|81542|thioredoxin-related transmembrane protein 1##AB048246|TMX1|81542|thioredoxin-related transmembrane protein 1##BC036460|TMX1|81542|thioredoxin-related transmembrane protein 1##BC016769|TMX1|81542|thioredoxin-related transmembrane protein 1##BC050366|TMX1|81542|thioredoxin-related transmembrane protein 1##AK075395|TMX1|81542|thioredoxin-related transmembrane protein 1##BC032834|TMX1|81542|thioredoxin-related transmembrane protein 1##AK303134|TMX1|81542|thioredoxin-related transmembrane protein 1##AL080080|TMX1|81542|thioredoxin-related transmembrane protein 1##BC056874|TMX1|81542|thioredoxin-related transmembrane protein 1##AY358640|TMX1|81542|thioredoxin-related transmembrane protein 1##AK312905|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ891674|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ894860|TMX1|81542|thioredoxin-related transmembrane protein 1##NM_001243773|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##NM_001243774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##NM_053064|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK092371|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK307171|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2	0.201134	0.017962	
chr9	123918856	123918998	reg1002242.p1	10.311	+	TSC_hg19_v1_chr9_+_123884078 AK090600 AX746527 BC002932	-34859	+	NM_007018 BC137284 BC137286 AF513978	-68339	+	TSC_hg19_v1_chr9_-_123837410 AB209031	-81497	-	TSC_hg19_v1_chr9_+_123963731 AK125819	44817	+	AF112206 AL162081 TSC_hg19_v1_chr9_-_123964133 BC006081 BC013057	45127	-	TSC_hg19_v1_chr9_-_123964148 AK023524	45219	-	AK090600|CNTRL|11064|centriolin##BC002932|CNTRL|11064|centriolin##NM_007018|CNTRL|11064|centriolin##BC137284|CNTRL|11064|centriolin##BC137286|CNTRL|11064|centriolin##AF513978|CNTRL|11064|centriolin##AB209031|C5|727|complement component 5##AK125819|GSN|2934|gelsolin##AF112206|RAB14|51552|RAB14, member RAS oncogene family##AL162081|RAB14|51552|RAB14, member RAS oncogene family##BC006081|RAB14|51552|RAB14, member RAS oncogene family##BC013057|RAB14|51552|RAB14, member RAS oncogene family##AK023524|RAB14|51552|RAB14, member RAS oncogene family	0.0	0.0	
chr2	37623171	37623309	reg1002368.p1	10.305	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-51427	+	BC030706 BC012820 AB015982 NM_005813	-79047	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-164394	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	275539	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	276149	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	529192	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.869352	0.332143	CTCF.p2:-16:0.332	denovo_WM_7:20:0.584
chr4	2766379	2766533	reg1001881.p2	10.305	+	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	-8393	-	AK026176 NM_001161527	-8706	-	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	-139283	+	TSC_hg19_v1_chr4_+_2794755 AK225497 NM_001122681 BC022996	28279	+	AK312286 TSC_hg19_v1_chr4_+_2794811 AK307106	28366	+	NM_001145855 TSC_hg19_v1_chr4_+_2813962	47498	+	AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##AK225497|SH3BP2|6452|SH3-domain binding protein 2##NM_001122681|SH3BP2|6452|SH3-domain binding protein 2##BC022996|SH3BP2|6452|SH3-domain binding protein 2##AK312286|SH3BP2|6452|SH3-domain binding protein 2##AK307106|SH3BP2|6452|SH3-domain binding protein 2##NM_001145855|SH3BP2|6452|SH3-domain binding protein 2	0.99988	0.0	denovo_WM_7:-17:0.295	denovo_WM_7:-18:0.295	denovo_WM_7:-19:0.295
chr11	95987446	95987598	reg1001717.p1	10.301	+	BC052990 BC012086 TSC_hg19_v1_chr11_-_95657272 BC034474 BX647997 NM_001243571 NM_016156 NM_201278 NM_201281 AB028996	-330166	-	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	-330471	-	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	-463682	+	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	88881	-	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	135520	-	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	135652	+	BC052990|MTMR2|8898|myotubularin related protein 2##BC012086|MTMR2|8898|myotubularin related protein 2##BC034474|MTMR2|8898|myotubularin related protein 2##BX647997|MTMR2|8898|myotubularin related protein 2##NM_001243571|MTMR2|8898|myotubularin related protein 2##NM_016156|MTMR2|8898|myotubularin related protein 2##NM_201278|MTMR2|8898|myotubularin related protein 2##NM_201281|MTMR2|8898|myotubularin related protein 2##AB028996|MTMR2|8898|myotubularin related protein 2##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)	0.998997	0.0	denovo_WM_7:41:0.310	denovo_WM_7:42:0.310	denovo_WM_7:43:0.310
chr1	208147554	208147734	reg1001788.p2	10.298	+	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	-63087	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	-63261	-	BX640941 TSC_hg19_v1_chr1_-_208059392	-88321	-	TSC_hg19_v1_chr1_-_208417635 NM_025179	270005	-	AK091113 AX746785 NM_001104548	1454521	+	NM_020439 AK095713 AK289675 AF428261 BC032787	1609416	+	BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##NM_025179|PLXNA2|5362|plexin A2##NM_001104548|MIR205HG|642587|MIR205 host gene (non-protein coding)##NM_020439|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK095713|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK289675|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AF428261|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##BC032787|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG	0.996728	0.0	denovo_WM_7:-4:0.527	denovo_WM_7:-5:0.470
chr5	131515953	131516072	reg1001868.p2	10.297	+	M11220 NM_000758 BC113924 BC113999 BC108724 M11734 M10663 AY720441 AB591004 AF510855	-106487	+	M20137 NM_000588 BC069472 BC066272 BC066273 BC066274 BC066275 BC066276 M17115 M14743 CU686832 HQ448457	-119640	+	AK314452 BC047453 NM_001205248 NM_001205251 BC026161 NM_001205250 DQ655980	-168319	-	NM_001017973 NM_004199 BC017062	46931	-	TSC_hg19_v1_chr5_-_131563545 AY358970 BC025960 BC035813 BX647924 NM_001017974 NM_001142598 NM_001142599	47506	-	TSC_hg19_v1_chr5_+_131593340 BC016765 NM_001131027 NM_003687 AF154335	77341	+	M11220|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##NM_000758|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##BC113924|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##BC113999|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##BC108724|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##M11734|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##M10663|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##AY720441|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##AF510855|CSF2|1437|colony stimulating factor 2 (granulocyte-macrophage)##M20137|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##NM_000588|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC069472|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066272|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066273|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066274|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066275|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066276|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##M17115|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##M14743|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##HQ448457|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##AK314452|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##BC047453|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205248|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205251|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##BC026161|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205250|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##DQ655980|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001017973|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##NM_004199|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##BC017062|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##AY358970|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##BC025960|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##BC035813|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##BX647924|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##NM_001017974|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##NM_001142598|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##NM_001142599|P4HA2|8974|prolyl 4-hydroxylase, alpha polypeptide II##BC016765|PDLIM4|8572|PDZ and LIM domain 4##NM_001131027|PDLIM4|8572|PDZ and LIM domain 4##NM_003687|PDLIM4|8572|PDZ and LIM domain 4##AF154335|PDLIM4|8572|PDZ and LIM domain 4	0.974718	0.013245	denovo_WM_7:-26:0.947
chr7	91761163	91761328	reg1001706.p1	10.295	+	TSC_hg19_v1_chr7_+_91570181 NM_005751 NM_147185 AJ131693 AF026245 BC015533 AB019691 AY803272 CU677341	-190964	+	TSC_hg19_v1_chr7_-_91509979 BC108648 AL832861 AK298469 AK313641 NM_006980 Y09615 AK222730 AK311568	-251230	-	TSC_hg19_v1_chr7_+_90893747 AB017363 NM_003505 AF072872 BC051271 AK314996	-867369	+	AB590319 CU689330 DQ891311 DQ894495 TSC_hg19_v1_chr7_-_91763765 D55653 BC018429	2477	-	TSC_hg19_v1_chr7_-_91763792 AK314205 BC032322 U23942	2556	-	TSC_hg19_v1_chr7_-_91763829 NM_000786	2602	-	NM_005751|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##NM_147185|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##AJ131693|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##AF026245|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##BC015533|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##AB019691|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##BC108648|MTERF|7978|mitochondrial transcription termination factor##AL832861|MTERF|7978|mitochondrial transcription termination factor##AK298469|MTERF|7978|mitochondrial transcription termination factor##AK313641|MTERF|7978|mitochondrial transcription termination factor##NM_006980|MTERF|7978|mitochondrial transcription termination factor##Y09615|MTERF|7978|mitochondrial transcription termination factor##AK222730|MTERF|7978|mitochondrial transcription termination factor##AB017363|FZD1|8321|frizzled family receptor 1##NM_003505|FZD1|8321|frizzled family receptor 1##AF072872|FZD1|8321|frizzled family receptor 1##BC051271|FZD1|8321|frizzled family receptor 1##AK314996|FZD1|8321|frizzled family receptor 1##DQ891311|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##DQ894495|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##D55653|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##BC018429|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##AK314205|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##BC032322|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##U23942|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##NM_000786|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1	0.094586	0.0	
chrX	52925793	52925973	reg1001693.p2	10.295	+	AF318372 BC062680 NM_133179	-28775	-	AJ318881 NM_130776	-29552	-	BC069129 BC103962 BC103963 BC103964 NM_130775	-84656	+	TSC_hg19_v1_chrX_+_52926321 NM_001242491	439	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	461	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	508	+	AF318372|XAGE3|170626|X antigen family, member 3##BC062680|XAGE3|170626|X antigen family, member 3##NM_133179|XAGE3|170626|X antigen family, member 3##AJ318881|XAGE3|170626|X antigen family, member 3##NM_130776|XAGE3|170626|X antigen family, member 3##BC069129|XAGE5|170627|X antigen family, member 5##BC103962|XAGE5|170627|X antigen family, member 5##BC103963|XAGE5|170627|X antigen family, member 5##BC103964|XAGE5|170627|X antigen family, member 5##NM_130775|XAGE5|170627|X antigen family, member 5##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B	1.549434	0.0	denovo_WM_7:-26:0.253
chr17	70418541	70418619	reg1001310.p1	10.294	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-301340	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-301410	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-301421	+	AK000477 TSC_hg19_v1_chr17_-_70588944	170363	-	AF331643 TSC_hg19_v1_chr17_-_71088816	670236	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	670243	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	1.299348	0.0	denovo_WM_7:-38:0.714	denovo_WM_7:-72:0.336
chrX	47171941	47172059	reg1002349.p1	10.294	+	TSC_hg19_v1_chrX_+_47092422 AK055588 AK098394 BC073960 BC063668 AB073597 BC000350 AB385092 U44839 AK294635	-79535	+	BC140849 NM_004651 TSC_hg19_v1_chrX_+_47092361	-79688	+	AK301832 NM_001170460	-89584	+	U28687 NM_003446 BC075003 AB528013 EU446919	58023	+	BC015023 NM_007130 NM_153380	170344	-	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	248567	+	AK055588|USP11|8237|ubiquitin specific peptidase 11##AK098394|USP11|8237|ubiquitin specific peptidase 11##BC073960|USP11|8237|ubiquitin specific peptidase 11##BC063668|USP11|8237|ubiquitin specific peptidase 11##AB073597|USP11|8237|ubiquitin specific peptidase 11##BC000350|USP11|8237|ubiquitin specific peptidase 11##U44839|USP11|8237|ubiquitin specific peptidase 11##AK294635|USP11|8237|ubiquitin specific peptidase 11##BC140849|USP11|8237|ubiquitin specific peptidase 11##NM_004651|USP11|8237|ubiquitin specific peptidase 11##AK301832|CDK16|5127|cyclin-dependent kinase 16##NM_001170460|CDK16|5127|cyclin-dependent kinase 16##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog	0.995774	0.251758	CTCF.p2:-12:0.252	denovo_WM_7:43:0.983
chr16	16102669	16102843	reg1001670.p1	10.293	+	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	-59392	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-120271	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	-120303	-	TSC_hg19_v1_chr16_+_16146613 HQ917065	43862	+	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	214564	-	TSC_hg19_v1_chr16_+_16326401 NM_001004067	223641	+	L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AL832498|FOPNL|123811|FGFR1OP N-terminal like##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001004067|NOMO3|408050|NODAL modulator 3	2.99077	0.02076	denovo_WM_7:38:0.389	denovo_WM_7:39:0.321	denovo_WM_7:62:0.867
chr7	66096587	66096767	reg1002114.p1	10.292	+	BC042482 TSC_hg19_v1_chr7_+_66093944 AK056631 AK127790	-2735	+	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	-2803	+	TSC_hg19_v1_chr7_-_66057374 BC080520 BC057835 BC067867 AK310548 BC103766 AK310370 AK296922	-39316	-	TSC_hg19_v1_chr7_+_66147121 AK056864	50463	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	108967	+	TSC_hg19_v1_chr7_+_66205692 BC015330	109017	+	BC042482|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK056631|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK310548|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##BC103766|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK310370|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK296922|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK056864|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1	0.990379	0.0	denovo_WM_7:21:0.819
chr12	24967304	24967461	reg1001135.p1	10.289	+	BC104436 BC104437 TSC_hg19_v1_chr12_-_24737100 AK057456	-230289	-	TSC_hg19_v1_chr12_-_24715349 AB081588 NM_152989 BC060773	-252017	-	BC014929 TSC_hg19_v1_chr12_-_24103967 AK303970	-863421	-	TSC_hg19_v1_chr12_-_25055230 CR749308 BC033864 NM_001178094	87892	-	TSC_hg19_v1_chr12_-_25055966 AK294879 NM_001178093	88605	-	TSC_hg19_v1_chr12_-_25101988 AK299088	134574	-	BC104436|LINC00477|144360|long intergenic non-protein coding RNA 477##BC104437|LINC00477|144360|long intergenic non-protein coding RNA 477##AK057456|LINC00477|144360|long intergenic non-protein coding RNA 477##AB081588|SOX5|6660|SRY (sex determining region Y)-box 5##NM_152989|SOX5|6660|SRY (sex determining region Y)-box 5##BC060773|SOX5|6660|SRY (sex determining region Y)-box 5##BC014929|SOX5|6660|SRY (sex determining region Y)-box 5##AK303970|SOX5|6660|SRY (sex determining region Y)-box 5##CR749308|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC033864|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178094|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK294879|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178093|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK299088|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic	0.900067	0.0	denovo_WM_7:-22:0.685
chr14	61124086	61124198	reg1001080.p1	10.289	+	BT007083 CU679159 TSC_hg19_v1_chr14_-_61116196 BC008874 NM_005982 X91868	-8052	-	BC065831 NM_007374 BC087852 BC069413 AJ011785 EU446644	-148116	+	BC125070 BC125071 AK098187 NM_174978 AL832219	-171369	-	AF032107 TSC_hg19_v1_chr14_-_61190584 BC098135 BC098282 BC099722 BC101934 EU446619 EU446844 NM_017420	66512	-	TSC_hg19_v1_chr14_-_61191035 AK309358	66915	-	TSC_hg19_v1_chr14_+_61201489 NM_001177963 NM_002431 BC000820 AK308701 U61835 X87843 X92669 AB463879 CU674412 CR450336	77373	+	BT007083|SIX1|6495|SIX homeobox 1##BC008874|SIX1|6495|SIX homeobox 1##NM_005982|SIX1|6495|SIX homeobox 1##X91868|SIX1|6495|SIX homeobox 1##BC065831|SIX6|4990|SIX homeobox 6##NM_007374|SIX6|4990|SIX homeobox 6##BC087852|SIX6|4990|SIX homeobox 6##BC069413|SIX6|4990|SIX homeobox 6##AJ011785|SIX6|4990|SIX homeobox 6##EU446644|SIX6|4990|SIX homeobox 6##BC125070|C14orf39|317761|chromosome 14 open reading frame 39##BC125071|C14orf39|317761|chromosome 14 open reading frame 39##AK098187|C14orf39|317761|chromosome 14 open reading frame 39##NM_174978|C14orf39|317761|chromosome 14 open reading frame 39##AL832219|C14orf39|317761|chromosome 14 open reading frame 39##AF032107|SIX4|51804|SIX homeobox 4##BC098135|SIX4|51804|SIX homeobox 4##BC098282|SIX4|51804|SIX homeobox 4##BC099722|SIX4|51804|SIX homeobox 4##BC101934|SIX4|51804|SIX homeobox 4##EU446619|SIX4|51804|SIX homeobox 4##EU446844|SIX4|51804|SIX homeobox 4##NM_017420|SIX4|51804|SIX homeobox 4##AK309358|SIX4|51804|SIX homeobox 4##NM_001177963|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##NM_002431|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##BC000820|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##AK308701|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##U61835|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##X87843|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##X92669|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##CR450336|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)	0.977128	0.0	denovo_WM_7:24:0.977
chr17	37934442	37934622	reg1001675.p2	10.289	+	AK290115 NM_001242443	-38313	+	AK125544 NM_001242442	-39509	+	AK294620 NM_001030002 BC006535 TSC_hg19_v1_chr17_+_37894600	-39953	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	85898	-	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	89911	+	AF119884 NM_018530	139260	-	AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AK125544|GRB7|2886|growth factor receptor-bound protein 7##NM_001242442|GRB7|2886|growth factor receptor-bound protein 7##AK294620|GRB7|2886|growth factor receptor-bound protein 7##NM_001030002|GRB7|2886|growth factor receptor-bound protein 7##BC006535|GRB7|2886|growth factor receptor-bound protein 7##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B	1.028213	0.0	denovo_WM_7:33:0.868
chr15	90394940	90395070	reg1001824.p1	10.282	+	TSC_hg19_v1_chr15_-_90358085 AB209918 NM_001150 AK298242	-36933	-	AB462940 X13276 TSC_hg19_v1_chr15_-_90349860 BC058928 M22324	-45129	-	AK298339 TSC_hg19_v1_chr15_-_90347590	-47435	-	TSC_hg19_v1_chr15_-_90437227 DQ892982 DQ896230 BC002785 AL110108 BC007773 AK222698 AK294712 X99459 BC010020 AK312467	42212	-	NM_005829	42611	-	AK093274 AX748027 CU691000 TSC_hg19_v1_chr15_-_90456145 AK000495 BC053602 NM_001199058 NM_182616	61100	-	AB209918|ANPEP|290|alanyl (membrane) aminopeptidase##NM_001150|ANPEP|290|alanyl (membrane) aminopeptidase##AK298242|ANPEP|290|alanyl (membrane) aminopeptidase##X13276|ANPEP|290|alanyl (membrane) aminopeptidase##BC058928|ANPEP|290|alanyl (membrane) aminopeptidase##M22324|ANPEP|290|alanyl (membrane) aminopeptidase##AK298339|ANPEP|290|alanyl (membrane) aminopeptidase##DQ892982|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##DQ896230|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##BC002785|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AL110108|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##BC007773|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK222698|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK294712|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##X99459|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##BC010020|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK312467|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##NM_005829|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK093274|C15orf38|348110|chromosome 15 open reading frame 38##AK000495|C15orf38-AP3S2|100526783|C15orf38-AP3S2 readthrough##BC053602|C15orf38|348110|chromosome 15 open reading frame 38##NM_001199058|C15orf38-AP3S2|100526783|C15orf38-AP3S2 readthrough##NM_182616|C15orf38|348110|chromosome 15 open reading frame 38	0.995583	0.0	denovo_WM_7:37:0.879
chr17	61920963	61921108	reg1002015.p2	10.281	+	TSC_hg19_v1_chr17_-_61920365 BC136322 NM_001098426 U66618	-685	-	TSC_hg19_v1_chr17_-_61920289 BC142963	-748	-	TSC_hg19_v1_chr17_-_61920046 AK300939	-954	-	V00573 BC119748 BC022044 BC035965 NM_020991 NM_022644 NM_022645	30007	-	AB451332 AB451477 AF006061 AF006060 M38451 BC020760 J03756 NM_002059 NM_022556 NM_022557 NM_022558 AK312194	38156	-	BT006926 J00118 BC002717 AK291587 BC005921 BC057768 BC062775 BC020756 NM_001317 M35419	52916	-	BC136322|SMARCD2|6603|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2##NM_001098426|SMARCD2|6603|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2##U66618|SMARCD2|6603|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2##BC142963|SMARCD2|6603|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2##AK300939|SMARCD2|6603|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2##V00573|CSH2|1443|chorionic somatomammotropin hormone 2##BC119748|CSH2|1443|chorionic somatomammotropin hormone 2##BC022044|CSH2|1443|chorionic somatomammotropin hormone 2##BC035965|CSH2|1443|chorionic somatomammotropin hormone 2##NM_020991|CSH2|1443|chorionic somatomammotropin hormone 2##NM_022644|CSH2|1443|chorionic somatomammotropin hormone 2##NM_022645|CSH2|1443|chorionic somatomammotropin hormone 2##AB451332|GH2|2689|growth hormone 2##AB451477|GH2|2689|growth hormone 2##AF006061|GH2|2689|growth hormone 2##AF006060|GH2|2689|growth hormone 2##M38451|GH2|2689|growth hormone 2##BC020760|GH2|2689|growth hormone 2##J03756|GH2|2689|growth hormone 2##NM_002059|GH2|2689|growth hormone 2##NM_022556|GH2|2689|growth hormone 2##NM_022557|GH2|2689|growth hormone 2##NM_022558|GH2|2689|growth hormone 2##AK312194|GH2|2689|growth hormone 2##BT006926|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##J00118|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC002717|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##AK291587|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC005921|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC057768|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC062775|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC020756|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##NM_001317|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)	0.996196	0.0	
chr16	12707125	12707253	reg1002024.p1	10.280	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-636616	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-648105	+	NM_001130007	-696671	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	190462	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	190530	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	288279	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	0.997837	0.0	denovo_WM_7:-12:0.881
chr18	52966682	52966825	reg1001467.p1	10.279	+	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-340066	-	AK058097 NM_001143829	-341475	-	TSC_hg19_v1_chr18_+_52495674 AF329499 NM_004163 BC027474 U57093	-471015	+	FR748222 NM_001243236	3029	-	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	22249	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	102085	-	AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##AK058097|CCDC68|80323|coiled-coil domain containing 68##NM_001143829|CCDC68|80323|coiled-coil domain containing 68##AF329499|RAB27B|5874|RAB27B, member RAS oncogene family##NM_004163|RAB27B|5874|RAB27B, member RAS oncogene family##BC027474|RAB27B|5874|RAB27B, member RAS oncogene family##U57093|RAB27B|5874|RAB27B, member RAS oncogene family##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4	1.122872	0.0	denovo_WM_7:-59:0.239	denovo_WM_7:-60:0.239	denovo_WM_7:-61:0.239	denovo_WM_7:-62:0.239
chr10	18031967	18032077	reg1002155.p1	10.277	+	AK308132 AK308167 BC142642 J05550 NM_002438 X55635 BC146838 DQ663787	-180619	+	NM_001098844 BC157856	-237768	+	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	-345792	+	NM_001098844 BC157856	9199	+	AK308132 AK308167 J05550 NM_002438 X55635 BC146838 DQ663787	66371	+	NM_001145195 NM_152725 AK055061 BC035118 BC047635 AK295294 BC094700	208807	+	BC142642|MRC1|4360|mannose receptor, C type 1##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001145195|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##NM_152725|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK055061|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC035118|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC047635|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK295294|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC094700|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12	0.990226	0.118174	denovo_WM_7:34:0.239	denovo_WM_7:35:0.239	denovo_WM_7:36:0.239	denovo_WM_7:37:0.239
chr9	130795555	130795649	reg1001074.p1	10.277	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-52793	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-82671	-	BC015233 NM_003863	-94840	-	AK122729 NM_197956	33996	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	34881	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	35017	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.989284	0.0	denovo_WM_7:31:0.919
chr2	101593455	101593602	reg1002316.p1	10.272	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-156762	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	-414092	+	AB164464 NM_001011717	-506585	+	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	25194	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	174255	-	TSC_hg19_v1_chr2_+_101869347 NM_017546	275809	+	NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##AB164464|NMS|129521|neuromedin S##NM_001011717|NMS|129521|neuromedin S##NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29	0.995075	0.0	denovo_WM_7:-21:0.927
chrX	43885892	43886001	reg1001962.p2	10.270	+	NM_000266	-53026	-	AK294306 M69177 TSC_hg19_v1_chrX_-_43741666 BC022494 AK310458 AK312679 NM_000898	-144279	-	TSC_hg19_v1_chrX_-_43741500 S62734 CU692654 GQ129432 GQ129433	-144423	-	CU689086 AK292967 AK026496 AK297714 BC031039 NM_025184 AK291187	317002	-	TSC_hg19_v1_chrX_-_44402101 BC035015 BC042813 NM_173794	516208	-	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	817367	+	NM_000266|NDP|4693|Norrie disease (pseudoglioma)##AK294306|MAOB|4129|monoamine oxidase B##M69177|MAOB|4129|monoamine oxidase B##BC022494|MAOB|4129|monoamine oxidase B##AK310458|MAOB|4129|monoamine oxidase B##AK312679|MAOB|4129|monoamine oxidase B##NM_000898|MAOB|4129|monoamine oxidase B##S62734|MAOB|4129|monoamine oxidase B##GQ129432|MAOB|4129|monoamine oxidase B##GQ129433|MAOB|4129|monoamine oxidase B##AK292967|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK026496|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK297714|EFHC2|80258|EF-hand domain (C-terminal) containing 2##BC031039|EFHC2|80258|EF-hand domain (C-terminal) containing 2##NM_025184|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK291187|EFHC2|80258|EF-hand domain (C-terminal) containing 2##BC035015|FUNDC1|139341|FUN14 domain containing 1##BC042813|FUNDC1|139341|FUN14 domain containing 1##NM_173794|FUNDC1|139341|FUN14 domain containing 1##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21	1.985523	0.737619	CTCF.p2:-2:0.738	denovo_WM_7:42:0.957	denovo_WM_7:57:0.956
chr19	7200859	7201021	reg1001765.p1	10.267	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-101389	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-131225	+	AK315405 NM_001044387 NM_001044388 NM_024341	-131478	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	93020	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	259067	+	TSC_hg19_v1_chr19_+_7460061 AB011093	259137	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.998839	0.0	
chr20	11248155	11248316	reg1001876.p1	10.266	+	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	-593666	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	-594031	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-832259	+	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	623214	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	650322	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	1741406	+	BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3	0.0	0.0	
chr8	8654585	8654746	reg1001979.p1	10.266	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	-94967	+	AK122582 NM_001080826	-415443	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-478777	-	TSC_hg19_v1_chr8_-_8751060 NM_004225	96273	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	205700	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	205840	+	AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1	0.992937	0.0	denovo_WM_7:3:0.314	denovo_WM_7:4:0.314	denovo_WM_7:5:0.314
chr12	4380939	4381119	reg1000245.p1	10.262	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-398529	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-518647	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-518761	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	2015	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	49362	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	107771	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	0.0	0.0	
chr16	57557019	57557133	reg1001170.p1	10.262	+	BC003541 TSC_hg19_v1_chr16_-_57520403 NM_018110 AK001350	-36691	-	TSC_hg19_v1_chr16_+_57496590 BC003159 AK300124 AK293112 BC028157 AJ224143 AJ224144 J05448 BC000409 AB464040 AF008443 CR542041 DQ891411 DQ894586 EU176305	-60471	+	TSC_hg19_v1_chr16_+_57496570 AK295582	-60505	+	BC008285 BC009941 NM_033212	13389	-	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	19478	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	19512	+	BC003541|DOK4|55715|docking protein 4##NM_018110|DOK4|55715|docking protein 4##AK001350|DOK4|55715|docking protein 4##BC003159|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK300124|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK293112|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC028157|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224143|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224144|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##J05448|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC000409|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AF008443|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##CR542041|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ891411|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ894586|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##EU176305|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114	0.983651	0.0	denovo_WM_7:11:0.362	denovo_WM_7:12:0.622
chr19	29235035	29235178	reg1002527.p1	10.252	+	TSC_hg19_v1_chr19_+_28284946 AK095009	-950178	+	TSC_hg19_v1_chr19_-_28284831 AK311452	-950273	-	TSC_hg19_v1_chr19_+_28284377 BC024732	-950718	+	TSC_hg19_v1_chr19_-_29704059 DQ891841 BC000649 BC067832 BC010035 BC021057 AK291134	468954	-	TSC_hg19_v1_chr19_-_29704107 NM_006003	469015	-	NM_001146339	782384	+	AK311452|LOC148189|148189|uncharacterized LOC148189##DQ891841|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC000649|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC067832|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC010035|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##AK291134|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_006003|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_001146339|VSTM2B|342865|V-set and transmembrane domain containing 2B	0.0	0.0	
chr6	45649884	45650064	reg1001866.p1	10.251	+	TSC_hg19_v1_chr6_+_45390379 L40992	-259562	+	TSC_hg19_v1_chr6_+_45390325 BC108919 BC108920	-259669	+	TSC_hg19_v1_chr6_+_45389825 NM_004348	-260109	+	DQ892643 DQ895881 CU690236 AF176920 AK314416 AK075163 TSC_hg19_v1_chr6_-_45983598 AK075144 AF216941 AK222544 BC035968 DQ679794 AK223130 NM_016929	333503	-	AY032602 AK097048 NM_001114086	398057	-	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	447740	+	L40992|RUNX2|860|runt-related transcription factor 2##BC108919|RUNX2|860|runt-related transcription factor 2##BC108920|RUNX2|860|runt-related transcription factor 2##NM_004348|RUNX2|860|runt-related transcription factor 2##DQ892643|CLIC5|53405|chloride intracellular channel 5##DQ895881|CLIC5|53405|chloride intracellular channel 5##AF176920|CLIC5|53405|chloride intracellular channel 5##AK314416|CLIC5|53405|chloride intracellular channel 5##AK075163|CLIC5|53405|chloride intracellular channel 5##AK075144|CLIC5|53405|chloride intracellular channel 5##AF216941|CLIC5|53405|chloride intracellular channel 5##AK222544|CLIC5|53405|chloride intracellular channel 5##BC035968|CLIC5|53405|chloride intracellular channel 5##DQ679794|CLIC5|53405|chloride intracellular channel 5##AK223130|CLIC5|53405|chloride intracellular channel 5##NM_016929|CLIC5|53405|chloride intracellular channel 5##AY032602|CLIC5|53405|chloride intracellular channel 5##AK097048|CLIC5|53405|chloride intracellular channel 5##NM_001114086|CLIC5|53405|chloride intracellular channel 5##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	0.999382	0.0	denovo_WM_7:37:0.739
chr16	57373710	57373890	reg1001504.p1	10.250	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-55221	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-55289	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-94667	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	18910	+	AK222692 TSC_hg19_v1_chr16_+_57406382	32585	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	32639	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	0.23641	0.0	denovo_WM_7:8:0.214
chr10	22895210	22895350	reg1001909.p4	10.249	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-169281	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-260824	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-285115	+	AK294817 TSC_hg19_v1_chr10_-_23003038	107757	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	108210	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	321701	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	0.936155	0.0	denovo_WM_7:-32:0.580
chr10	88173369	88173494	reg1002161.p2	10.246	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-47168	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-1988736	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2041813	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	108063	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	108099	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	240963	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.996956	0.0	denovo_WM_7:31:0.724
chr16	88657963	88658129	reg1001976.p1	10.246	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-21177	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	-21218	+	AK300254 AK302716 TSC_hg19_v1_chr16_+_88636810	-21236	+	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	46957	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	59403	-	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	71471	-	BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18##AK300254|ZC3H18|124245|zinc finger CCCH-type containing 18##AK302716|ZC3H18|124245|zinc finger CCCH-type containing 18##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase	0.997917	0.0	denovo_WM_7:-57:0.817
chr5	112298103	112298239	reg1002117.p1	10.246	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	-40184	-	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	-101147	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	-101242	+	TSC_hg19_v1_chr5_+_112312407 NM_001242377 NM_152624	14234	+	TSC_hg19_v1_chr5_+_112312506 AY135173 AY146650 BC017965 AK296361 AK090564 AX746512 BC064593 BC068042 CU687920	14357	+	M62397 AK096212 TSC_hg19_v1_chr5_-_112630346	332154	-	AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##NM_001242377|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##NM_152624|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY135173|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY146650|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC017965|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK296361|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK090564|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC064593|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC068042|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##M62397|MCC|4163|mutated in colorectal cancers##AK096212|MCC|4163|mutated in colorectal cancers	0.997636	0.0	denovo_WM_7:-35:0.817
chr17	65399290	65399453	reg1002154.p1	10.244	+	BC007905 NM_012417 NM_181671	-25448	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-25783	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-25962	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	314679	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	422331	+	AK293224 TSC_hg19_v1_chr17_+_65822221	422846	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.999369	0.0	
chr15	50594806	50594986	reg1002120.p2	10.241	+	AK308833 NM_002112	-36735	-	TSC_hg19_v1_chr15_+_50474425 AK290262 NM_001159629 NM_003645 AF096290 AK222859 D88308 AK223145 BC057770 CU691220	-120406	+	TSC_hg19_v1_chr15_-_50411492 BC144298 BC144297 NM_024837	-183430	-	TSC_hg19_v1_chr15_-_50647062 BC068063 BC009935 AK000900	52173	-	TSC_hg19_v1_chr15_+_50647161 BC014238 BC004103	52264	+	TSC_hg19_v1_chr15_-_50647316 BC016910 D13316 BC050702 AK303901	52404	-	AK308833|HDC|3067|histidine decarboxylase##NM_002112|HDC|3067|histidine decarboxylase##AK290262|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_001159629|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_003645|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AF096290|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK222859|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##D88308|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK223145|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC057770|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC144298|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC144297|ATP8B4|79895|ATPase, class I, type 8B, member 4##NM_024837|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC068063|FLJ10038|55056|uncharacterized protein FLJ10038##BC009935|FLJ10038|55056|uncharacterized protein FLJ10038##AK000900|FLJ10038|55056|uncharacterized protein FLJ10038##BC014238|LOC100129387|100129387|uncharacterized LOC100129387##BC004103|LOC100129387|100129387|uncharacterized LOC100129387##BC016910|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##D13316|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##BC050702|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK303901|GABPB1|2553|GA binding protein transcription factor, beta subunit 1	1.012365	0.0	
chr12	9917540	9917695	reg1001849.p1	10.240	+	AY238518 CU675505 DQ893175 DQ896474 L07555 AK291869 AK303174 AK303383 BC007037 NM_001781 Z22576	-4162	-	AF518873 BC093857 BC093859 NM_001253748 NM_001253750 NM_172004	-31741	-	BC063128 NM_001197318 NM_013269 AK310150 NM_001004419 AK310554 AK313554 BC019883 AF133299 AF285087 CU676474 FN813349 FN813350 FN813351 NM_001197317 NM_001197319	-95350	+	AF175206 AF175207 AF267244 AF267245 NM_016523 AJ305370 BC096734 BC098166 BC098257 BC098354	62479	+	X96719 AY142147 AB015628 BC005254 AK311232 TSC_hg19_v1_chr12_-_10021954 AK313916 AK307334	104341	-	NM_005127	104840	-	AY238518|CD69|969|CD69 molecule##DQ893175|CD69|969|CD69 molecule##DQ896474|CD69|969|CD69 molecule##L07555|CD69|969|CD69 molecule##AK291869|CD69|969|CD69 molecule##AK303174|CD69|969|CD69 molecule##AK303383|CD69|969|CD69 molecule##BC007037|CD69|969|CD69 molecule##NM_001781|CD69|969|CD69 molecule##Z22576|CD69|969|CD69 molecule##AF518873|CLECL1|160365|C-type lectin-like 1##BC093857|CLECL1|160365|C-type lectin-like 1##BC093859|CLECL1|160365|C-type lectin-like 1##NM_001253748|CLECL1|160365|C-type lectin-like 1##NM_001253750|CLECL1|160365|C-type lectin-like 1##NM_172004|CLECL1|160365|C-type lectin-like 1##BC063128|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197318|CLEC2D|29121|C-type lectin domain family 2, member D##NM_013269|CLEC2D|29121|C-type lectin domain family 2, member D##AK310150|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001004419|CLEC2D|29121|C-type lectin domain family 2, member D##AK310554|CLEC2D|29121|C-type lectin domain family 2, member D##AK313554|CLEC2D|29121|C-type lectin domain family 2, member D##BC019883|CLEC2D|29121|C-type lectin domain family 2, member D##AF133299|CLEC2D|29121|C-type lectin domain family 2, member D##AF285087|CLEC2D|29121|C-type lectin domain family 2, member D##FN813349|CLEC2D|29121|C-type lectin domain family 2, member D##FN813350|CLEC2D|29121|C-type lectin domain family 2, member D##FN813351|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197317|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197319|CLEC2D|29121|C-type lectin domain family 2, member D##AF175206|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AF175207|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AF267244|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AF267245|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##NM_016523|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AJ305370|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC096734|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC098166|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC098257|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC098354|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##X96719|CLEC2B|9976|C-type lectin domain family 2, member B##AY142147|CLEC2B|9976|C-type lectin domain family 2, member B##AB015628|CLEC2B|9976|C-type lectin domain family 2, member B##BC005254|CLEC2B|9976|C-type lectin domain family 2, member B##AK311232|CLEC2B|9976|C-type lectin domain family 2, member B##AK313916|CLEC2B|9976|C-type lectin domain family 2, member B##AK307334|CLEC2B|9976|C-type lectin domain family 2, member B##NM_005127|CLEC2B|9976|C-type lectin domain family 2, member B	0.986771	0.0	denovo_WM_7:29:0.681	denovo_WM_7:30:0.254
chr10	32666621	32666791	reg1001902.p1	10.239	+	TSC_hg19_v1_chr10_-_32636137 BC036529 CR749375	-30557	-	TSC_hg19_v1_chr10_-_32636116 AF277374 FJ230887 NM_025209	-30598	-	CU691366 TSC_hg19_v1_chr10_-_32636082 AK092304 AX747467 AK309822	-30744	-	AF286905 AK309309 AK299676 TSC_hg19_v1_chr10_-_32667698	931	-	TSC_hg19_v1_chr10_+_32735092 NM_001026383 NM_145023 AK057324 BC042672 BC022020	68356	+	AK023093 NM_024688 BC125090 BC125091	190000	+	BC036529|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##CR749375|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF277374|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_025209|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK092304|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309822|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF286905|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309309|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK299676|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_001026383|CCDC7|221016|coiled-coil domain containing 7##NM_145023|CCDC7|221016|coiled-coil domain containing 7##AK057324|CCDC7|221016|coiled-coil domain containing 7##BC042672|CCDC7|221016|coiled-coil domain containing 7##BC022020|CCDC7|221016|coiled-coil domain containing 7##AK023093|C10orf68|79741|chromosome 10 open reading frame 68##NM_024688|C10orf68|79741|chromosome 10 open reading frame 68##BC125090|C10orf68|79741|chromosome 10 open reading frame 68##BC125091|C10orf68|79741|chromosome 10 open reading frame 68	1.506088	0.0	denovo_WM_7:34:0.646	denovo_WM_7:-79:0.475
chr10	12306916	12307048	reg1001405.p4	10.237	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-68756	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-68783	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-68800	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	84593	+	TSC_hg19_v1_chr10_+_12391709 BC035745	84735	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	84795	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	1.986407	0.0	denovo_WM_7:-12:0.265	denovo_WM_7:-13:0.221	denovo_WM_7:-31:0.231	denovo_WM_7:-32:0.275
chr6	131350995	131351144	reg1002033.p2	10.237	+	CR749262 CR936793 NM_001252660	-29182	-	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	-59518	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	-202507	+	AF027299 TSC_hg19_v1_chr6_-_131384381 BC034718 AB209522	33282	-	TSC_hg19_v1_chr6_-_131384387 AK295124 NM_001135554 NM_001135555 NM_001199388 NM_001431	33355	-	NM_016377 TSC_hg19_v1_chr6_+_131456855 AK300587	105778	+	CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AF027299|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##BC034718|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AB209522|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AK295124|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001135554|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001135555|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199388|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001431|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_016377|AKAP7|9465|A kinase (PRKA) anchor protein 7##AK300587|AKAP7|9465|A kinase (PRKA) anchor protein 7	1.43734	0.0	denovo_WM_7:-17:0.467	denovo_WM_7:-18:0.404	denovo_WM_7:-33:0.353
chr1	234860181	234860333	reg1001934.p2	10.236	+	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-115011	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-116399	-	TSC_hg19_v1_chr1_-_234743841 AK299768	-116426	-	TSC_hg19_v1_chr1_-_234895746 AF193050	35517	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	431832	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	431974	-	BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AF193050|PP2672|100130249|uncharacterized LOC100130249##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)	1.042228	0.0	denovo_WM_7:-9:0.809
chr20	6168667	6168831	reg1001822.p1	10.232	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-64586	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-64872	-	TSC_hg19_v1_chr20_-_6103678 AK314394 BC040545 AF443278	-65075	-	BC069214 NM_001200	579995	+	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1752353	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1831551	-	AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AK314394|FERMT1|55612|fermitin family member 1##BC040545|FERMT1|55612|fermitin family member 1##AF443278|FERMT1|55612|fermitin family member 1##BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4	0.998284	0.0	
chr7	78532368	78532482	reg1002042.p2	10.232	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	-1062916	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	-1104215	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	-1104284	+	AB014605 BC150277 AK297353 AF038563 NM_012301	550454	-	TSC_hg19_v1_chr7_+_79083303 AK311103	550732	+	TSC_hg19_v1_chr7_+_79764166 NM_002069 BC026326 AL049933 AK292953	1231714	+	BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##AB014605|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##BC150277|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK297353|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AF038563|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##NM_012301|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK311103|MAGI2-AS3|100505881|MAGI2 antisense RNA 3 (non-protein coding)##NM_002069|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##BC026326|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AL049933|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AK292953|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	1.987391	0.0	
chr13	111367587	111367736	reg1001169.p1	10.231	+	AB024402 AF181849 NM_005537	-318	+	AB024401 AF149721 TSC_hg19_v1_chr13_+_111366061	-1606	+	NM_198218 AF181850 NM_198219	-2045	+	CU674848 CU691752 TSC_hg19_v1_chr13_-_111567293	199626	-	TSC_hg19_v1_chr13_-_111567375 BC001727 AK096083 BC039715	199704	-	AK000100 NM_017664 TSC_hg19_v1_chr13_-_111567417	199755	-	AB024402|ING1|3621|inhibitor of growth family, member 1##AF181849|ING1|3621|inhibitor of growth family, member 1##NM_005537|ING1|3621|inhibitor of growth family, member 1##AB024401|ING1|3621|inhibitor of growth family, member 1##AF149721|ING1|3621|inhibitor of growth family, member 1##NM_198218|ING1|3621|inhibitor of growth family, member 1##AF181850|ING1|3621|inhibitor of growth family, member 1##NM_198219|ING1|3621|inhibitor of growth family, member 1##BC001727|ANKRD10|55608|ankyrin repeat domain 10##AK096083|ANKRD10|55608|ankyrin repeat domain 10##BC039715|ANKRD10|55608|ankyrin repeat domain 10##AK000100|ANKRD10|55608|ankyrin repeat domain 10##NM_017664|ANKRD10|55608|ankyrin repeat domain 10	0.08467	0.0	
chr11	78127743	78127923	reg1001301.p1	10.229	+	AB011143 BC152459 NM_012296	-74908	-	AK056231 NM_020798 AK301048 AK307875 TSC_hg19_v1_chr11_+_77899953	-227908	+	TSC_hg19_v1_chr11_-_77899673 AK300320 BC036058 NM_001029859 AK095233	-228177	-	AB018413 BC131711 TSC_hg19_v1_chr11_-_78128848	973	-	TSC_hg19_v1_chr11_-_78128866 NM_080491	1043	-	BC007800 TSC_hg19_v1_chr11_-_78285839 AK056980	157959	-	AB011143|GAB2|9846|GRB2-associated binding protein 2##BC152459|GAB2|9846|GRB2-associated binding protein 2##NM_012296|GAB2|9846|GRB2-associated binding protein 2##AK056231|USP35|57558|ubiquitin specific peptidase 35##NM_020798|USP35|57558|ubiquitin specific peptidase 35##AK301048|USP35|57558|ubiquitin specific peptidase 35##AK307875|USP35|57558|ubiquitin specific peptidase 35##AK300320|KCTD21|283219|potassium channel tetramerisation domain containing 21##BC036058|KCTD21|283219|potassium channel tetramerisation domain containing 21##NM_001029859|KCTD21|283219|potassium channel tetramerisation domain containing 21##AK095233|KCTD21|283219|potassium channel tetramerisation domain containing 21##AB018413|GAB2|9846|GRB2-associated binding protein 2##BC131711|GAB2|9846|GRB2-associated binding protein 2##NM_080491|GAB2|9846|GRB2-associated binding protein 2##BC007800|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AK056980|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)	0.99985	0.0	
chr17	1246051	1246195	reg1001918.p1	10.225	+	AB090231 NM_172367 BC142615	-63159	+	NM_001164405	-72266	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-155535	-	TSC_hg19_v1_chr17_-_1248347 L13388	2233	-	TSC_hg19_v1_chr17_-_1303504 BT007161 CU674076 EU176525 U28936 AB590347 BC000179 AX775995 U43399 U43430 U54778 U20972 BC001440 AY883089 AK295260 AK295997 AK296050 AK296555 AK128785 AK316185 AK316201	57346	-	TSC_hg19_v1_chr17_-_1303556 NM_006761	57430	-	AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BT007161|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##EU176525|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U28936|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BC000179|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U43399|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U43430|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U54778|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U20972|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BC001440|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AY883089|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK295260|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK295997|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK296050|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK296555|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK128785|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK316185|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK316201|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##NM_006761|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	0.997509	0.0	
chr3	4771502	4771682	reg1001520.p2	10.218	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-236396	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-236464	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-236561	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	249524	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	249589	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	249762	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.997771	0.0	denovo_WM_7:26:0.771
chr15	99525802	99525982	reg1002237.p2	10.217	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	-333136	+	TSC_hg19_v1_chr15_+_99191767 AB425196	-333921	+	AK097062 AK097062 NM_182562	-468282	-	BC104743 BC104744 BC105686 NM_001102612	22945	-	AK058162 NM_001167902	25131	-	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	119348	+	NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein	1.744389	0.0	denovo_WM_7:43:0.289	denovo_WM_7:44:0.347	denovo_WM_7:45:0.237	denovo_WM_7:58:0.298	denovo_WM_7:59:0.304	denovo_WM_7:60:0.269
chr13	80387246	80387368	reg1001890.p2	10.213	+	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-331752	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	-331885	+	TSC_hg19_v1_chr13_+_80055257 NM_001161407 NM_019080 AB097019 AB097028 AB097029	-332036	+	BC004205 TSC_hg19_v1_chr13_-_80913114	525735	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	527757	-	TSC_hg19_v1_chr13_-_84456424 BC051738	4069118	-	AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##NM_001161407|NDFIP2|54602|Nedd4 family interacting protein 2##NM_019080|NDFIP2|54602|Nedd4 family interacting protein 2##AB097019|NDFIP2|54602|Nedd4 family interacting protein 2##AB097028|NDFIP2|54602|Nedd4 family interacting protein 2##AB097029|NDFIP2|54602|Nedd4 family interacting protein 2##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1	1.354413	0.0	denovo_WM_7:29:0.349	denovo_WM_7:44:0.540
chr5	171889310	171889414	reg1002010.p1	10.212	+	TSC_hg19_v1_chr5_-_171881518 AK128871 NM_001017995	-7859	-	AB430862 DQ109556 BC038561 TSC_hg19_v1_chr5_-_171881387	-7991	-	NM_152277 TSC_hg19_v1_chr5_-_171710808	-178547	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	178891	+	AF275799 TSC_hg19_v1_chr5_-_172083715	194281	-	TSC_hg19_v1_chr5_-_172198199 X68277 AK300487 AK298047 AK298658 AK304475 AK316321 BC022463 NM_004417 AK299391	308849	-	AK128871|SH3PXD2B|285590|SH3 and PX domains 2B##NM_001017995|SH3PXD2B|285590|SH3 and PX domains 2B##AB430862|SH3PXD2B|285590|SH3 and PX domains 2B##DQ109556|SH3PXD2B|285590|SH3 and PX domains 2B##BC038561|SH3PXD2B|285590|SH3 and PX domains 2B##NM_152277|UBTD2|92181|ubiquitin domain containing 2##GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)##X68277|DUSP1|1843|dual specificity phosphatase 1##AK300487|DUSP1|1843|dual specificity phosphatase 1##AK298047|DUSP1|1843|dual specificity phosphatase 1##AK298658|DUSP1|1843|dual specificity phosphatase 1##AK304475|DUSP1|1843|dual specificity phosphatase 1##AK316321|DUSP1|1843|dual specificity phosphatase 1##BC022463|DUSP1|1843|dual specificity phosphatase 1##NM_004417|DUSP1|1843|dual specificity phosphatase 1##AK299391|DUSP1|1843|dual specificity phosphatase 1	0.996387	0.99136	CTCF.p2:10:0.991
chr14	95946668	95946796	reg1001787.p1	10.211	+	AK131436 BC146604 BX248076 NM_152592	-4628	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	-160549	-	TSC_hg19_v1_chr14_+_95624023 BC040596	-322711	+	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	54283	-	TSC_hg19_v1_chr14_+_96001352 NM_016417	54594	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	54636	+	AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)##BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##NM_016417|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5	0.0	0.0	
chr15	85904644	85904796	reg1001964.p1	10.211	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-238402	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-379394	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-379483	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	19171	+	AF127481 NM_144767	315547	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	433377	-	AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)	0.0	0.0	
chr17	4529394	4529489	reg1001522.p2	10.207	+	BC110859 NM_001114974	-41608	+	NM_198501 AK124452 BC105050 BC112177	-42117	+	CU687648 BC063111 AK129501 AK300648 AK296645 TSC_hg19_v1_chr17_-_4463871 AK074646 NM_001122890 NM_153338	-65590	-	AB590843 M23892 BC029032 NM_001140 AK290309 AK296792 AK296904 AK312557	15517	-	AY882602 U88154 BC039131 TSC_hg19_v1_chr17_-_4607413 AB384790 AF547989 BC069058 U88153 AK226056	77864	-	TSC_hg19_v1_chr17_-_4607415 AK293838	77976	-	BC110859|SMTNL2|342527|smoothelin-like 2##NM_001114974|SMTNL2|342527|smoothelin-like 2##NM_198501|SMTNL2|342527|smoothelin-like 2##AK124452|SMTNL2|342527|smoothelin-like 2##BC105050|SMTNL2|342527|smoothelin-like 2##BC112177|SMTNL2|342527|smoothelin-like 2##BC063111|GGT6|124975|gamma-glutamyltransferase 6##AK129501|GGT6|124975|gamma-glutamyltransferase 6##AK300648|GGT6|124975|gamma-glutamyltransferase 6##AK296645|GGT6|124975|gamma-glutamyltransferase 6##AK074646|GGT6|124975|gamma-glutamyltransferase 6##NM_001122890|GGT6|124975|gamma-glutamyltransferase 6##NM_153338|GGT6|124975|gamma-glutamyltransferase 6##M23892|ALOX15|246|arachidonate 15-lipoxygenase##BC029032|ALOX15|246|arachidonate 15-lipoxygenase##NM_001140|ALOX15|246|arachidonate 15-lipoxygenase##AK290309|ALOX15|246|arachidonate 15-lipoxygenase##AK296792|ALOX15|246|arachidonate 15-lipoxygenase##AK296904|ALOX15|246|arachidonate 15-lipoxygenase##AK312557|ALOX15|246|arachidonate 15-lipoxygenase##AY882602|PELP1|27043|proline, glutamate and leucine rich protein 1##U88154|PELP1|27043|proline, glutamate and leucine rich protein 1##BC039131|PELP1|27043|proline, glutamate and leucine rich protein 1##AF547989|PELP1|27043|proline, glutamate and leucine rich protein 1##BC069058|PELP1|27043|proline, glutamate and leucine rich protein 1##U88153|PELP1|27043|proline, glutamate and leucine rich protein 1##AK226056|PELP1|27043|proline, glutamate and leucine rich protein 1##AK293838|PELP1|27043|proline, glutamate and leucine rich protein 1	0.980303	0.916653	CTCF.p2:0:0.917	denovo_WM_7:48:0.340	denovo_WM_7:50:0.339
chr2	25645150	25645301	reg1001959.p1	10.207	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-79763	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-79862	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-79897	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	251176	-	AB385496 TSC_hg19_v1_chr2_-_26101159	455904	-	TSC_hg19_v1_chr2_-_26101174 AB084279	455948	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	1.977185	0.0	denovo_WM_7:44:0.718	denovo_WM_7:59:0.804
chr10	105227269	105227403	reg1001939.p1	10.204	+	BC036193 BC036208 NM_001001412	-8691	-	TSC_hg19_v1_chr10_-_105212166 AK022195 NM_015916	-15173	-	AF131810 TSC_hg19_v1_chr10_-_105212068 BC000039	-15272	-	BC043367 NM_001129742	11660	-	NM_004210 U87864	26398	+	AK299620 TSC_hg19_v1_chr10_+_105344798	117431	+	BC036193|CALHM1|255022|calcium homeostasis modulator 1##BC036208|CALHM1|255022|calcium homeostasis modulator 1##NM_001001412|CALHM1|255022|calcium homeostasis modulator 1##AK022195|CALHM2|51063|calcium homeostasis modulator 2##NM_015916|CALHM2|51063|calcium homeostasis modulator 2##AF131810|CALHM2|51063|calcium homeostasis modulator 2##BC000039|CALHM2|51063|calcium homeostasis modulator 2##BC043367|CALHM3|119395|calcium homeostasis modulator 3##NM_001129742|CALHM3|119395|calcium homeostasis modulator 3##NM_004210|NEURL|9148|neuralized homolog (Drosophila)##U87864|NEURL|9148|neuralized homolog (Drosophila)##AK299620|NEURL|9148|neuralized homolog (Drosophila)	0.999571	0.0	denovo_WM_7:-36:0.390	denovo_WM_7:-38:0.389
chr1	28929387	28929567	reg1001464.p2	10.204	+	NM_001193532 AK026009	-10461	+	BC033175 NM_152304 AK312176	-10735	+	BC064589 BC068048 AK092096 BC045792 TSC_hg19_v1_chr1_-_28908385	-21107	-	BC011986 TSC_hg19_v1_chr1_-_28969617 U57693 X84002 AK310097 NM_001135218 NM_005644	40103	-	TSC_hg19_v1_chr1_+_28995244 NM_006582 NM_024482 AK000892	65752	+	BC001473 AK315195 AK315436 AF173868 AF203694 AK023126 TSC_hg19_v1_chr1_+_28995361	65851	+	NM_001193532|RAB42|115273|RAB42, member RAS oncogene family##BC033175|RAB42|115273|RAB42, member RAS oncogene family##NM_152304|RAB42|115273|RAB42, member RAS oncogene family##AK312176|RAB42|115273|RAB42, member RAS oncogene family##BC064589|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC068048|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##AK092096|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC045792|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC011986|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##U57693|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##X84002|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##AK310097|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_001135218|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_005644|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_006582|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_024482|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK000892|GMEB1|10691|glucocorticoid modulatory element binding protein 1##BC001473|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315195|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315436|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF173868|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF203694|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK023126|GMEB1|10691|glucocorticoid modulatory element binding protein 1	0.0	0.971058	CTCF.p2:61:0.971
chr2	57724786	57724908	reg1002261.p1	10.203	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-1311938	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-1313081	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-1313642	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	548907	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	549141	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	743635	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	0.956223	0.998028	CTCF.p2:-16:0.998	denovo_WM_7:35:0.211	denovo_WM_7:37:0.716
chr4	156292777	156292894	reg1001739.p1	10.203	+	NM_000910 U42766	-163055	+	NM_144979 AK302720 BC028588	-590373	+	TSC_hg19_v1_chr4_+_155665151 AY546085 AY546086 NM_004744 AF071510	-627619	+	TSC_hg19_v1_chr4_-_156297959 BC022852	5120	-	TSC_hg19_v1_chr4_-_156297990 AK301075 BC146864 BC128540 BC128541 BC056683	5173	-	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	5276	-	NM_000910|NPY2R|4887|neuropeptide Y receptor Y2##U42766|NPY2R|4887|neuropeptide Y receptor Y2##NM_144979|RBM46|166863|RNA binding motif protein 46##AK302720|RBM46|166863|RNA binding motif protein 46##BC028588|RBM46|166863|RNA binding motif protein 46##AY546085|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AY546086|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##NM_004744|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AF071510|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##BC022852|MAP9|79884|microtubule-associated protein 9##AK301075|MAP9|79884|microtubule-associated protein 9##BC146864|MAP9|79884|microtubule-associated protein 9##BC128540|MAP9|79884|microtubule-associated protein 9##BC128541|MAP9|79884|microtubule-associated protein 9##BC056683|MAP9|79884|microtubule-associated protein 9##AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9	0.99693	0.932279	CTCF.p2:-14:0.932	denovo_WM_7:41:0.928
chr6	157296685	157296840	reg1001848.p1	10.203	+	TSC_hg19_v1_chr6_+_157099876 AF253515	-196887	+	TSC_hg19_v1_chr6_+_157099283 AF521671	-197478	+	TSC_hg19_v1_chr6_+_157099206 AB587572	-197537	+	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	447822	-	TSC_hg19_v1_chr6_-_157745183 NM_018452	448455	-	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	505777	+	AF253515|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_018452|TMEM242|729515|transmembrane protein 242##AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14	1.840742	0.0	denovo_WM_7:-3:0.204	denovo_WM_7:-5:0.531	denovo_WM_7:-18:0.202	denovo_WM_7:-20:0.463
chr1	192508064	192508226	reg1001567.p1	10.201	+	AY643711 NM_001039152	-222024	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-380542	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-2061410	-	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	36763	+	NM_002927 NM_144766 AF030107 BC016667	97139	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	270039	+	AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa	1.33841	0.0	denovo_WM_7:-3:0.927	denovo_WM_7:52:0.343
chr16	47351926	47352087	reg1001839.p1	10.200	+	TSC_hg19_v1_chr16_-_47177902 AK074937 NM_001201477 NM_018092	-174084	-	AY358718 BC108727 TSC_hg19_v1_chr16_-_47177852 BC098380	-174160	-	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	-344411	-	TSC_hg19_v1_chr16_-_47494975 BC006321 DQ893514 DQ896493 AF503339 AK027596	142859	-	TSC_hg19_v1_chr16_-_47494995 BC024162 NM_030790	143029	-	TSC_hg19_v1_chr16_-_47495158 AF212247 AK301908	143151	-	AK074937|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_001201477|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_018092|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AY358718|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC108727|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC098380|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC006321|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ893514|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ896493|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF503339|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK027596|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##BC024162|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##NM_030790|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF212247|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK301908|ITFG1|81533|integrin alpha FG-GAP repeat containing 1	0.493872	0.170941	denovo_WM_7:24:0.414
chr10	97543699	97543879	reg1001770.p1	10.198	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-28249	+	AJ133133 AJ133134 NM_001098175	-72254	+	BC068449 DQ278872 NM_001143973 NM_015631	-89890	-	AK294399 NM_001130446	123932	+	NM_001001732 NM_001159747 AK302377 BC075861	216075	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	259592	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	1.478594	0.0	denovo_WM_7:-18:0.305	denovo_WM_7:78:0.449	denovo_WM_7:79:0.449
chr10	121335640	121335804	reg1001967.p1	10.196	+	AB587433 BC009361 TSC_hg19_v1_chr10_-_121302217 AK290773 NM_001005339	-33532	-	NM_002925	-39678	-	TSC_hg19_v1_chr10_+_120967098 BC018116 BC064506 BC064506 NM_005308 L15388 AK309761 AK309761 AK313012 AB590773	-368461	+	AB527493 AY633610 AK295243 M96954 TSC_hg19_v1_chr10_-_121356143 AK290984 AK291239	20386	-	TSC_hg19_v1_chr10_-_121356475 AL833106 AK290695	20778	-	TSC_hg19_v1_chr10_-_121356537 BC030025 NM_001033925 NM_003252	20830	-	BC009361|RGS10|6001|regulator of G-protein signaling 10##AK290773|RGS10|6001|regulator of G-protein signaling 10##NM_001005339|RGS10|6001|regulator of G-protein signaling 10##NM_002925|RGS10|6001|regulator of G-protein signaling 10##BC018116|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##NM_005308|GRK5|2869|G protein-coupled receptor kinase 5##L15388|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK313012|GRK5|2869|G protein-coupled receptor kinase 5##AY633610|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK295243|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##M96954|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK290984|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK291239|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AL833106|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK290695|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##BC030025|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##NM_001033925|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##NM_003252|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.988489	0.0	denovo_WM_7:0:0.228	denovo_WM_7:1:0.228	denovo_WM_7:2:0.228	denovo_WM_7:3:0.228
chr1	151030154	151030334	reg1001972.p2	10.195	+	TSC_hg19_v1_chr1_+_151020221 AK301712 AY358436 AK315680 AK000526 BC002469 NM_017860	-9997	+	NM_001159642 NM_138278 AY033000 BC027868 AK092595 AX747620 AF193056	-21185	+	TSC_hg19_v1_chr1_+_150980936 AK315120 AF051907 AF123538 BC014886 BC025304 NM_021222 AF123539 AK294154 BC063481 DQ892819 DQ896065 AB528544	-49243	+	TSC_hg19_v1_chr1_-_151032050 AF187845 AF286592	1799	-	TSC_hg19_v1_chr1_-_151032111 BC041604 AK054914 NM_001038707 NM_020239	1859	-	NM_006818 AK056089	1908	+	AY358436|C1orf56|54964|chromosome 1 open reading frame 56##AK315680|C1orf56|54964|chromosome 1 open reading frame 56##AK000526|C1orf56|54964|chromosome 1 open reading frame 56##BC002469|C1orf56|54964|chromosome 1 open reading frame 56##NM_017860|C1orf56|54964|chromosome 1 open reading frame 56##NM_001159642|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##NM_138278|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AY033000|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##BC027868|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AK092595|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AF193056|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AK315120|PRUNE|58497|prune homolog (Drosophila)##AF051907|PRUNE|58497|prune homolog (Drosophila)##AF123538|PRUNE|58497|prune homolog (Drosophila)##BC014886|PRUNE|58497|prune homolog (Drosophila)##BC025304|PRUNE|58497|prune homolog (Drosophila)##NM_021222|PRUNE|58497|prune homolog (Drosophila)##AF123539|PRUNE|58497|prune homolog (Drosophila)##AK294154|PRUNE|58497|prune homolog (Drosophila)##BC063481|PRUNE|58497|prune homolog (Drosophila)##DQ892819|PRUNE|58497|prune homolog (Drosophila)##DQ896065|PRUNE|58497|prune homolog (Drosophila)##AF187845|CDC42SE1|56882|CDC42 small effector 1##AF286592|CDC42SE1|56882|CDC42 small effector 1##BC041604|CDC42SE1|56882|CDC42 small effector 1##NM_001038707|CDC42SE1|56882|CDC42 small effector 1##NM_020239|CDC42SE1|56882|CDC42 small effector 1##NM_006818|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AK056089|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	0.996928	0.0	denovo_WM_7:-16:0.928
chr10	102000679	102000784	reg1001880.p1	10.194	+	TSC_hg19_v1_chr10_-_101989343 NM_001278 AF080157	-11373	-	U22512 AF012890 AB590489 BC092514 TSC_hg19_v1_chr10_-_101989331 AF009225 AB209028	-11465	-	TSC_hg19_v1_chr10_-_101945787 AF064093 NM_001100626	-54929	-	AL832515 CU679081 AK023984 BC008746 AK001860 AK225590 TSC_hg19_v1_chr10_-_102027422 AK295303 AK097895 NM_018294	26655	-	BC020494 AY278457 AK054697 NM_001001342	45299	-	AY531265 AB463442 TSC_hg19_v1_chr10_-_102046438 AB593084 AK298969 NM_173809	45707	-	NM_001278|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF080157|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##U22512|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF012890|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC092514|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF009225|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AB209028|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF064093|ERLIN1|10613|ER lipid raft associated 1##NM_001100626|ERLIN1|10613|ER lipid raft associated 1##AL832515|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK023984|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC008746|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK001860|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK225590|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK295303|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK097895|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##NM_018294|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC020494|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY278457|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK054697|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_001001342|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY531265|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AB593084|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK298969|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_173809|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2	1.957516	0.015552	denovo_WM_7:32:0.679	denovo_WM_7:34:0.213	denovo_WM_7:47:0.678	denovo_WM_7:49:0.252
chr14	38547818	38547935	reg1002095.p1	10.192	+	TSC_hg19_v1_chr14_-_38064444 NM_004496	-483412	-	TSC_hg19_v1_chr14_-_38064316 AK313785	-483560	-	AB463645 CU689794 AM392863 AM393239 AM393310 AM393369 TSC_hg19_v1_chr14_-_38064234 BC033890	-483670	-	TSC_hg19_v1_chr14_+_38677186 BX248780 NM_001049	129318	+	AK290868 TSC_hg19_v1_chr14_+_38678303 BC035618	130424	+	AB384936 DQ893328 DQ896644 TSC_hg19_v1_chr14_+_38678642	130743	+	NM_004496|FOXA1|3169|forkhead box A1##AK313785|FOXA1|3169|forkhead box A1##AM392863|FOXA1|3169|forkhead box A1##AM393239|FOXA1|3169|forkhead box A1##AM393310|FOXA1|3169|forkhead box A1##AM393369|FOXA1|3169|forkhead box A1##BC033890|FOXA1|3169|forkhead box A1##BX248780|SSTR1|6751|somatostatin receptor 1##NM_001049|SSTR1|6751|somatostatin receptor 1##AK290868|SSTR1|6751|somatostatin receptor 1##BC035618|SSTR1|6751|somatostatin receptor 1##DQ893328|SSTR1|6751|somatostatin receptor 1##DQ896644|SSTR1|6751|somatostatin receptor 1	0.998208	0.0	
chr17	8861998	8862121	reg1001846.p2	10.191	+	AY725853 AF128881 NM_014308	-46243	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	-91075	-	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-159507	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	6922	-	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	62908	+	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	617072	-	AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8	1.578903	0.0	denovo_WM_7:6:0.589	denovo_WM_7:23:0.523	denovo_WM_7:25:0.273
chr17	33390519	33390655	reg1001383.p1	10.190	+	TSC_hg19_v1_chr17_+_33307530 NM_002311 NM_013975 BC068005 AK300363 AK308407 U40671 X84740 BC009026	-82999	+	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	-101998	+	TSC_hg19_v1_chr17_-_33288480 AK302344 BC027591 NM_001193529 NM_001193530 NM_006584	-102085	-	TSC_hg19_v1_chr17_-_33390690 CR933651 NM_001017368	130	-	TSC_hg19_v1_chr17_-_33416298 AK093112 AX747930 BC028424	25724	-	AB464124 DQ892318 DQ895520 BC002723 AB013341 AB016223 AB016224 AB016225 Y15572 AF034956 BC014422 TSC_hg19_v1_chr17_-_33446836 AK296241 BX647297 AK301249	56158	-	NM_002311|LIG3|3980|ligase III, DNA, ATP-dependent##NM_013975|LIG3|3980|ligase III, DNA, ATP-dependent##BC068005|LIG3|3980|ligase III, DNA, ATP-dependent##AK300363|LIG3|3980|ligase III, DNA, ATP-dependent##AK308407|LIG3|3980|ligase III, DNA, ATP-dependent##U40671|LIG3|3980|ligase III, DNA, ATP-dependent##X84740|LIG3|3980|ligase III, DNA, ATP-dependent##BC009026|LIG3|3980|ligase III, DNA, ATP-dependent##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830##AK302344|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC027591|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193529|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193530|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_006584|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##CR933651|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_001017368|RFFL|117584|ring finger and FYVE-like domain containing 1##AK093112|RFFL|117584|ring finger and FYVE-like domain containing 1##BC028424|RFFL|117584|ring finger and FYVE-like domain containing 1##DQ892318|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##DQ895520|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC002723|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB013341|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016223|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016224|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016225|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##Y15572|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AF034956|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC014422|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK296241|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BX647297|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK301249|RAD51D|5892|RAD51 homolog D (S. cerevisiae)	1.987166	0.0	denovo_WM_7:-87:0.495	denovo_WM_7:-88:0.330	denovo_WM_7:-103:0.332	denovo_WM_7:-104:0.497
chr12	53811302	53811437	reg1002263.p1	10.188	+	BC043224 NM_003109	-36945	+	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	-37379	+	AY150674 NM_001173467	-81366	-	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	6309	+	TSC_hg19_v1_chr12_+_53818869 CR627318	7497	+	NM_001005354 NM_018457 BC001464 TSC_hg19_v1_chr12_+_53835537 AF217517 AK296930 BC014257 BC016064 BC066943 AK074398 BX640962 BC062322 BC021019	24128	+	BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II##CR627318|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001005354|PRR13|54458|proline rich 13##NM_018457|PRR13|54458|proline rich 13##BC001464|PRR13|54458|proline rich 13##AF217517|PRR13|54458|proline rich 13##BC014257|PRR13|54458|proline rich 13##BC016064|PRR13|54458|proline rich 13##BC066943|PRR13|54458|proline rich 13##AK074398|PRR13|54458|proline rich 13##BX640962|PRR13|54458|proline rich 13##BC062322|PRR13|54458|proline rich 13##BC021019|PRR13|54458|proline rich 13	0.999485	0.0	denovo_WM_7:-23:0.487	denovo_WM_7:-24:0.403
chr4	186135049	186135186	reg1002538.p1	10.187	+	NM_031953	-3834	+	TSC_hg19_v1_chr4_-_186125137 AK091993 BC020772 BC030535 NM_020827	-9973	-	NM_001151 TSC_hg19_v1_chr4_+_186064419 J02966 AK291902 BC063643 BC008664 AB209764 BC061589 J03593 DQ891547 DQ894735 AB464231	-70647	+	AB037746 BC152444 NM_018409 AL161975	165044	-	TSC_hg19_v1_chr4_+_186317840 AY296056 NM_181726	182722	+	TSC_hg19_v1_chr4_+_186317892 BC088376	182778	+	NM_031953|SNX25|83891|sorting nexin 25##AK091993|KIAA1430|57587|KIAA1430##BC020772|KIAA1430|57587|KIAA1430##BC030535|KIAA1430|57587|KIAA1430##NM_020827|KIAA1430|57587|KIAA1430##NM_001151|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J02966|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK291902|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC063643|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC008664|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB209764|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC061589|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J03593|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ891547|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ894735|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB037746|LRP2BP|55805|LRP2 binding protein##BC152444|LRP2BP|55805|LRP2 binding protein##NM_018409|LRP2BP|55805|LRP2 binding protein##AL161975|LRP2BP|55805|LRP2 binding protein##AY296056|ANKRD37|353322|ankyrin repeat domain 37##NM_181726|ANKRD37|353322|ankyrin repeat domain 37##BC088376|ANKRD37|353322|ankyrin repeat domain 37	1.083795	0.0	denovo_WM_7:-17:0.463	denovo_WM_7:-18:0.518
chr7	44500086	44500265	reg1002078.p1	10.186	+	AJ252238 CU676368 AM392749 AM392792 AM393562 AM393817 AF078803 AF081572 AF081924 AF083419 AF140350 AB462968 TSC_hg19_v1_chr7_-_44365233 AJ252237 AF112471 AF112472 AK222703 AK294138 AK290148 U23460 AJ252236 AK315663 BC019070 NM_001220 NM_172078 NM_172079 NM_172080 NM_172081 NM_172082 NM_172083 NM_172084	-134884	-	TSC_hg19_v1_chr7_+_44240639 BC007319 AF091079 U95735 DQ890653 DQ893833 CU675611 AB451317 AB451447 BT007078 CR456989 CR542008	-259489	+	TSC_hg19_v1_chr7_+_44240631 AK223488	-259555	+	AB028991 EU350932 TSC_hg19_v1_chr7_-_44530237 BC003691 BC035014 NM_015332	30106	-	AY437865 AY515256 FJ481111 TSC_hg19_v1_chr7_-_44580901 BC117178 BC143731 BC143756 AF192522 AF192523 NM_001101648 NM_013389	80710	-	TSC_hg19_v1_chr7_-_44613508 CR457213 DQ891215 DQ894398 AB385026 AL136700 AK022774 AK309276 BC001235 AK222662 AK315363 AF247666 AJ131712	113356	-	AJ252238|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AM392749|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AM392792|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AM393562|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AM393817|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF078803|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF081572|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF081924|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF083419|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF140350|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AJ252237|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF112471|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AF112472|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AK222703|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AK294138|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AK290148|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##U23460|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AJ252236|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##AK315663|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##BC019070|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_001220|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172078|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172079|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172080|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172081|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172082|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172083|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##NM_172084|CAMK2B|816|calcium/calmodulin-dependent protein kinase II beta##BC007319|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##AF091079|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##U95735|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##DQ890653|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##DQ893833|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##AB451317|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##AB451447|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##BT007078|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##CR456989|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##CR542008|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##AK223488|YKT6|10652|YKT6 v-SNARE homolog (S. cerevisiae)##AB028991|NUDCD3|23386|NudC domain containing 3##EU350932|NUDCD3|23386|NudC domain containing 3##BC003691|NUDCD3|23386|NudC domain containing 3##BC035014|NUDCD3|23386|NudC domain containing 3##NM_015332|NUDCD3|23386|NudC domain containing 3##AY437865|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##AY515256|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##FJ481111|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##BC117178|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##BC143731|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##BC143756|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##AF192522|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##AF192523|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##NM_001101648|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##NM_013389|NPC1L1|29881|NPC1 (Niemann-Pick disease, type C1, gene)-like 1##CR457213|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##DQ891215|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##DQ894398|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AL136700|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AK022774|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AK309276|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##BC001235|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AK222662|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AK315363|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AF247666|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56##AJ131712|DDX56|54606|DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	0.198035	0.0	
chrX	87868494	87868597	reg1001757.p1	10.185	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-1095740	+	AK055953 AK298787 NM_001139515	-2350575	+	AK091842 AX747214 TSC_hg19_v1_chrX_+_85403461	-2465080	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	133695	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	1308466	+	NM_080832	2821051	+	NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##AK055953|DACH2|117154|dachshund homolog 2 (Drosophila)##AK298787|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001139515|DACH2|117154|dachshund homolog 2 (Drosophila)##AK091842|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5	1.598522	0.0	denovo_WM_7:38:0.729	denovo_WM_7:71:0.602
chr10	80390657	80390794	reg1001491.p1	10.184	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	-597094	+	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	-597169	+	TSC_hg19_v1_chr10_-_79789304 NM_007055	-601411	-	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	438063	+	TSC_hg19_v1_chr10_+_80899458 AK025812	508759	+	TSC_hg19_v1_chr10_+_81003207 AB033050	612405	+	AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##NM_007055|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK025812|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AB033050|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.077641	0.0	
chr12	46547191	46547318	reg1001833.p1	10.182	+	TSC_hg19_v1_chr12_-_46385857 AK026473	-161379	-	TSC_hg19_v1_chr12_-_46384378 NM_004719	-162829	-	AK096682 TSC_hg19_v1_chr12_-_46384348 AF030234	-162907	-	AK074851 CU679761 DQ891017 EU176550 AK074949 AK313731 TSC_hg19_v1_chr12_-_46633674	86359	-	TSC_hg19_v1_chr12_-_46662567 AF247166	115312	-	TSC_hg19_v1_chr12_-_46662776 BC010620 BX648676	115489	-	AK026473|SCAF11|9169|SR-related CTD-associated factor 11##NM_004719|SCAF11|9169|SR-related CTD-associated factor 11##AK096682|SCAF11|9169|SR-related CTD-associated factor 11##AF030234|SCAF11|9169|SR-related CTD-associated factor 11##AK074851|SLC38A1|81539|solute carrier family 38, member 1##DQ891017|SLC38A1|81539|solute carrier family 38, member 1##EU176550|SLC38A1|81539|solute carrier family 38, member 1##AK074949|SLC38A1|81539|solute carrier family 38, member 1##AK313731|SLC38A1|81539|solute carrier family 38, member 1##AF247166|SLC38A1|81539|solute carrier family 38, member 1##BC010620|SLC38A1|81539|solute carrier family 38, member 1##BX648676|SLC38A1|81539|solute carrier family 38, member 1	1.006863	0.010393	denovo_WM_7:36:0.837
chr1	90135882	90136044	reg1002035.p1	10.181	+	TSC_hg19_v1_chr1_+_90098707 AK127881 AB081509 BC103929 BC113973	-37199	+	NM_032270 TSC_hg19_v1_chr1_+_90098643	-37318	+	TSC_hg19_v1_chr1_+_90098630 BC036122	-37330	+	TSC_hg19_v1_chr1_+_90286586 NM_001134479	150564	+	TSC_hg19_v1_chr1_+_90286603 AK092238 AX747423	150636	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	151495	+	AK127881|LRRC8C|84230|leucine rich repeat containing 8 family, member C##AB081509|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC103929|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC113973|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_032270|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC036122|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_001134479|LRRC8D|55144|leucine rich repeat containing 8 family, member D##AK092238|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D	0.0	0.0	
chr19	17200836	17201016	reg1002053.p1	10.180	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-14333	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-14605	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-63386	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	125246	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	125279	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	136108	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	2.78252	0.0	denovo_WM_7:8:0.691	denovo_WM_7:23:0.701	denovo_WM_7:38:0.734
chr20	32993288	32993411	reg1001941.p1	10.178	+	TSC_hg19_v1_chr20_+_32951078 NM_031483 AK297809 AK304090 AK315212 BC011571 AB056663	-42257	+	AK097610 NM_001161766	-93742	-	BT006697 CU679982 DQ890569 DQ891701 DQ893730 DQ895397 TSC_hg19_v1_chr20_-_32891162 M61832 M61831 BC010018 BC011606 AK300014 AK316180 AK290422 AK309204 NM_000687	-102205	-	TSC_hg19_v1_chr20_+_33104226 NM_014183 AF132750 BC002481 AF161511 AK294214 AF165516	110867	+	NM_181509	141342	+	TSC_hg19_v1_chr20_+_33146525 NM_032514 AF276658 BC015810 AL833855 AB528175 BT007452 DQ893641 DQ895536 AM392590	153237	+	NM_031483|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK297809|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK304090|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK315212|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##BC011571|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AB056663|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK097610|AHCY|191|adenosylhomocysteinase##NM_001161766|AHCY|191|adenosylhomocysteinase##BT006697|AHCY|191|adenosylhomocysteinase##DQ890569|AHCY|191|adenosylhomocysteinase##DQ891701|AHCY|191|adenosylhomocysteinase##DQ893730|AHCY|191|adenosylhomocysteinase##DQ895397|AHCY|191|adenosylhomocysteinase##M61832|AHCY|191|adenosylhomocysteinase##M61831|AHCY|191|adenosylhomocysteinase##BC010018|AHCY|191|adenosylhomocysteinase##BC011606|AHCY|191|adenosylhomocysteinase##AK300014|AHCY|191|adenosylhomocysteinase##AK316180|AHCY|191|adenosylhomocysteinase##AK290422|AHCY|191|adenosylhomocysteinase##AK309204|AHCY|191|adenosylhomocysteinase##NM_000687|AHCY|191|adenosylhomocysteinase##NM_014183|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF132750|DYNLRB1|83658|dynein, light chain, roadblock-type 1##BC002481|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF161511|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AK294214|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF165516|DYNLRB1|83658|dynein, light chain, roadblock-type 1##NM_181509|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##NM_032514|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AF276658|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BC015810|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AL833855|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BT007452|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ893641|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ895536|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AM392590|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha	0.993913	0.0	denovo_WM_7:-29:0.981
chr6	135415784	135415911	reg1001658.p2	10.176	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-39853	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-39959	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-144615	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	86601	+	TSC_hg19_v1_chr6_+_135502507 BC064955	86648	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	86739	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	1.651219	0.0	denovo_WM_7:-16:0.614	denovo_WM_7:-41:0.718
chr2	10585661	10585788	reg1002163.p1	10.175	+	AK000596 NM_134421	-141899	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-142675	+	BC093999 BC094001 NM_182626	-303745	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	2636	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	2728	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	244320	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	0.99903	0.0	denovo_WM_7:47:0.982
chr13	110768549	110768729	reg1001820.p1	10.174	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	-329731	-	AB290159 AK127806 NM_001198950	-1487070	+	AB020672 BC146791 NM_015011 AL834447	-1520125	+	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	34096	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	190870	-	TSC_hg19_v1_chr13_+_110959631 AK294920 NM_001846 X05562	190982	+	NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1##AK294920|COL4A2|1284|collagen, type IV, alpha 2##NM_001846|COL4A2|1284|collagen, type IV, alpha 2##X05562|COL4A2|1284|collagen, type IV, alpha 2	0.0	0.97128	CTCF.p2:-80:0.971
chr11	9253504	9253640	reg1001307.p2	10.164	+	TSC_hg19_v1_chr11_-_9225783 AK302478	-27751	-	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-140434	-	BC008835 TSC_hg19_v1_chr11_-_9025549 AK024750 AK098694 AK296484 NM_020645	-228009	-	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	33290	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	82487	-	TSC_hg19_v1_chr11_-_9336141 D26067	82566	-	AK302478|DENND5A|23258|DENN/MADD domain containing 5A##BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##BC008835|NRIP3|56675|nuclear receptor interacting protein 3##AK024750|NRIP3|56675|nuclear receptor interacting protein 3##AK098694|NRIP3|56675|nuclear receptor interacting protein 3##AK296484|NRIP3|56675|nuclear receptor interacting protein 3##NM_020645|NRIP3|56675|nuclear receptor interacting protein 3##AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B##D26067|TMEM41B|440026|transmembrane protein 41B	0.063202	0.0	
chr4	186319882	186320023	reg1001672.p1	10.164	+	AK303243 TSC_hg19_v1_chr4_+_186317996	-1972	+	TSC_hg19_v1_chr4_+_186317892 BC088376	-2057	+	TSC_hg19_v1_chr4_+_186317840 AY296056 NM_181726	-2113	+	TSC_hg19_v1_chr4_-_186347130 AK002062 AK091635 NM_018359	27137	-	BC127739 BC141968 BC150574 NM_001114357	30591	+	BC038515 AK302815 AL833337 TSC_hg19_v1_chr4_-_186392907 AB080722 BC028419 BX641119 AK097605 NM_001145411 NM_152775	72932	-	AK303243|ANKRD37|353322|ankyrin repeat domain 37##BC088376|ANKRD37|353322|ankyrin repeat domain 37##AY296056|ANKRD37|353322|ankyrin repeat domain 37##NM_181726|ANKRD37|353322|ankyrin repeat domain 37##AK002062|UFSP2|55325|UFM1-specific peptidase 2##AK091635|UFSP2|55325|UFM1-specific peptidase 2##NM_018359|UFSP2|55325|UFM1-specific peptidase 2##BC127739|C4orf47|441054|chromosome 4 open reading frame 47##BC141968|C4orf47|441054|chromosome 4 open reading frame 47##BC150574|C4orf47|441054|chromosome 4 open reading frame 47##NM_001114357|C4orf47|441054|chromosome 4 open reading frame 47##BC038515|CCDC110|256309|coiled-coil domain containing 110##AK302815|CCDC110|256309|coiled-coil domain containing 110##AL833337|CCDC110|256309|coiled-coil domain containing 110##AB080722|CCDC110|256309|coiled-coil domain containing 110##BC028419|CCDC110|256309|coiled-coil domain containing 110##BX641119|CCDC110|256309|coiled-coil domain containing 110##AK097605|CCDC110|256309|coiled-coil domain containing 110##NM_001145411|CCDC110|256309|coiled-coil domain containing 110##NM_152775|CCDC110|256309|coiled-coil domain containing 110	0.99591	0.0	
chr16	11051846	11051985	reg1001989.p1	10.160	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-13472	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-15680	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-15749	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	298135	-	X63758 BC096135 BC096136 BC096137 NM_005425	311223	-	NM_021247	315536	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.999742	0.0	denovo_WM_7:0:0.457	denovo_WM_7:1:0.457
chr10	92961228	92961408	reg1001800.p1	10.157	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	-38556	+	X83703 NM_014391	-280290	-	AB528537 DQ892852 DQ896099 AY903446 BC005191 AK290960 BC018667 TSC_hg19_v1_chr10_-_92680845	-280502	-	TSC_hg19_v1_chr10_+_92980445 NM_032373	19090	+	TSC_hg19_v1_chr10_+_92980539 AL832496	19216	+	BC071762 TSC_hg19_v1_chr10_+_93170064	208740	+	BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##X83703|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_014391|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ892852|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ896099|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AY903446|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC005191|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AK290960|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC018667|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_032373|PCGF5|84333|polycomb group ring finger 5##AL832496|PCGF5|84333|polycomb group ring finger 5	0.0	0.0	
chr1	212408051	212408182	reg1001590.p2	10.155	+	TSC_hg19_v1_chr1_+_212209137 AF195765 AK299649 BC033297 AK027651 CU689622 CU689648 DQ641253	-198936	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	-198998	+	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	-199102	+	TSC_hg19_v1_chr1_+_212458776 AK312530	50662	+	TSC_hg19_v1_chr1_+_212458867 L42373 NM_006243	50756	+	BC110883 TSC_hg19_v1_chr1_+_212459259	51098	+	AF195765|DTL|51514|denticleless homolog (Drosophila)##AK299649|DTL|51514|denticleless homolog (Drosophila)##BC033297|DTL|51514|denticleless homolog (Drosophila)##AK027651|DTL|51514|denticleless homolog (Drosophila)##DQ641253|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##AK312530|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##L42373|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##NM_006243|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC110883|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha	1.014729	0.0	
chr7	104668555	104668690	reg1001946.p1	10.154	+	TSC_hg19_v1_chr7_+_104654651 AY147037 NM_018682 NM_182931 BC053906 BC062583 BC009061 BC001296 BC142987 BC040004 AF519459 AK000940 BC040848	-13848	+	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	-14120	-	TSC_hg19_v1_chr7_-_104654062 AK094372	-14548	-	TSC_hg19_v1_chr7_+_104681423 AY157990	12792	+	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	83756	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	240861	-	AY147037|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_018682|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182931|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC053906|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC062583|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC009061|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC001296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC142987|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC040004|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AF519459|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AK000940|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC040848|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2	0.995483	0.0	denovo_WM_7:1:0.840
chr17	5129677	5129837	reg1002121.p2	10.153	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-34377	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-34584	-	AY143550 NM_004505 X63546 X63547	-98071	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	8344	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	55909	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	193168	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	1.909824	0.0	denovo_WM_7:29:0.336	denovo_WM_7:34:0.337	denovo_WM_7:53:0.780
chr7	144046974	144047101	reg1002008.p2	10.153	+	NM_001001802 NM_001005287	-31820	+	CR749203 TSC_hg19_v1_chr7_-_143991278	-55770	-	AK292236 NM_198495	-80652	-	AK160365 TSC_hg19_v1_chr7_+_144052469 NM_005435 CR749203 BC136661	5466	+	NM_001080413 AB528776	60282	-	TSC_hg19_v1_chr7_-_144533086 AK091736	486052	-	NM_001001802|OR2A42|402317|olfactory receptor, family 2, subfamily A, member 42##NM_001005287|OR2A1|346528|olfactory receptor, family 2, subfamily A, member 1##CR749203|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##AK292236|CTAGE8|100142659|CTAGE family, member 8##NM_198495|CTAGE4|100128553|CTAGE family, member 4##AK160365|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##NM_005435|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##CR749203|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##BC136661|ARHGEF5|7984|Rho guanine nucleotide exchange factor (GEF) 5##NM_001080413|NOBOX|135935|NOBOX oogenesis homeobox##AK091736|TPK1|27010|thiamin pyrophosphokinase 1	0.996443	0.0	
chr2	38119975	38120116	reg1001930.p2	10.150	+	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	-220656	-	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	-221266	-	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-548232	+	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	32387	+	BC024243 NM_001170792	35856	+	NM_001170793 NM_144713 AK057516 AF435956	57555	+	AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1##BC024243|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170792|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170793|FAM82A1|151393|family with sequence similarity 82, member A1##NM_144713|FAM82A1|151393|family with sequence similarity 82, member A1##AK057516|FAM82A1|151393|family with sequence similarity 82, member A1##AF435956|FAM82A1|151393|family with sequence similarity 82, member A1	0.31363	0.0	denovo_WM_7:-11:0.212
chr5	143073340	143073480	reg1001905.p1	10.144	+	NM_001018074 NM_001018075 NM_001018077	-258334	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-289244	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-289378	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	118348	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	476725	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	476766	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	1.170002	0.0	
chr9	126973212	126973388	reg1001914.p2	10.142	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-199229	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-199417	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-280989	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	46710	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	46945	+	TSC_hg19_v1_chr9_+_127020255 AB026289	46964	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.998336	0.0	denovo_WM_7:16:0.928
chrY	1549973	1550124	reg1001502.p3	10.142	+	AK301844 NM_001173473	-27397	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-28247	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-89079	-	BC043610 GQ280263 NM_178129 AK126147	55990	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	110481	+	NM_004043 U11090	114299	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.993472	0.0	denovo_WM_7:23:0.993
chr8	38860261	38860441	reg1002299.p2	10.140	+	TSC_hg19_v1_chr8_+_38854524 BC126406 BC143923 BC143924 AF495383	-5805	+	TSC_hg19_v1_chr8_+_38854491 BC027996 NM_003816 U41766	-5875	+	TSC_hg19_v1_chr8_-_38854029 AK314703 AK075155 NM_001024380 NM_001024381 NM_031940 NM_078473	-6319	-	NM_145004 AK300148 AY172952 AY358739 AK313864 BC026169 BC030698 BC034975 AK122608 BC028702 BC030014 BC026085 DQ890910 DQ894061 CU693126	104819	+	NM_001190956 NM_014237 AK313961 AY358321 BC070279 BC034624 CU687082 AJ133004 BC121045 BC121046 AK225744	581766	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	835389	-	BC126406|ADAM9|8754|ADAM metallopeptidase domain 9##BC143923|ADAM9|8754|ADAM metallopeptidase domain 9##BC143924|ADAM9|8754|ADAM metallopeptidase domain 9##AF495383|ADAM9|8754|ADAM metallopeptidase domain 9##BC027996|ADAM9|8754|ADAM metallopeptidase domain 9##NM_003816|ADAM9|8754|ADAM metallopeptidase domain 9##U41766|ADAM9|8754|ADAM metallopeptidase domain 9##AK314703|TM2D2|83877|TM2 domain containing 2##AK075155|TM2D2|83877|TM2 domain containing 2##NM_001024380|TM2D2|83877|TM2 domain containing 2##NM_001024381|TM2D2|83877|TM2 domain containing 2##NM_031940|TM2D2|83877|TM2 domain containing 2##NM_078473|TM2D2|83877|TM2 domain containing 2##NM_145004|ADAM32|203102|ADAM metallopeptidase domain 32##AK300148|ADAM32|203102|ADAM metallopeptidase domain 32##AY172952|ADAM32|203102|ADAM metallopeptidase domain 32##AY358739|ADAM32|203102|ADAM metallopeptidase domain 32##AK313864|ADAM32|203102|ADAM metallopeptidase domain 32##BC026169|ADAM32|203102|ADAM metallopeptidase domain 32##BC030698|ADAM32|203102|ADAM metallopeptidase domain 32##BC034975|ADAM32|203102|ADAM metallopeptidase domain 32##AK122608|ADAM32|203102|ADAM metallopeptidase domain 32##BC028702|ADAM32|203102|ADAM metallopeptidase domain 32##BC030014|ADAM32|203102|ADAM metallopeptidase domain 32##BC026085|ADAM32|203102|ADAM metallopeptidase domain 32##DQ890910|ADAM32|203102|ADAM metallopeptidase domain 32##DQ894061|ADAM32|203102|ADAM metallopeptidase domain 32##NM_001190956|ADAM18|8749|ADAM metallopeptidase domain 18##NM_014237|ADAM18|8749|ADAM metallopeptidase domain 18##AK313961|ADAM18|8749|ADAM metallopeptidase domain 18##AY358321|ADAM18|8749|ADAM metallopeptidase domain 18##BC070279|ADAM18|8749|ADAM metallopeptidase domain 18##BC034624|ADAM18|8749|ADAM metallopeptidase domain 18##AJ133004|ADAM18|8749|ADAM metallopeptidase domain 18##BC121045|ADAM18|8749|ADAM metallopeptidase domain 18##BC121046|ADAM18|8749|ADAM metallopeptidase domain 18##AK225744|ADAM18|8749|ADAM metallopeptidase domain 18##X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2	0.997726	0.010439	denovo_WM_7:15:0.767
chr5	180478075	180478208	reg1001610.p1	10.139	+	AK298113 TSC_hg19_v1_chr5_+_180467271 BC062459	-10826	+	NM_152547 TSC_hg19_v1_chr5_+_180467233 AK057097 AY358358	-10904	+	NM_197975 AK025267 AY358385 BC100800 BC100801 BC100802	-62240	+	NM_206880	103801	+	AF396655 NM_203297	149788	-	AF396652 AF396653 NM_203294 NM_203295 NM_203296	153198	-	AK298113|BTNL9|153579|butyrophilin-like 9##BC062459|BTNL9|153579|butyrophilin-like 9##NM_152547|BTNL9|153579|butyrophilin-like 9##AK057097|BTNL9|153579|butyrophilin-like 9##AY358358|BTNL9|153579|butyrophilin-like 9##NM_197975|BTNL3|10917|butyrophilin-like 3##AK025267|BTNL3|10917|butyrophilin-like 3##AY358385|BTNL3|10917|butyrophilin-like 3##BC100800|BTNL3|10917|butyrophilin-like 3##BC100801|BTNL3|10917|butyrophilin-like 3##BC100802|BTNL3|10917|butyrophilin-like 3##NM_206880|OR2V2|285659|olfactory receptor, family 2, subfamily V, member 2##AF396655|TRIM7|81786|tripartite motif containing 7##NM_203297|TRIM7|81786|tripartite motif containing 7##AF396652|TRIM7|81786|tripartite motif containing 7##AF396653|TRIM7|81786|tripartite motif containing 7##NM_203294|TRIM7|81786|tripartite motif containing 7##NM_203295|TRIM7|81786|tripartite motif containing 7##NM_203296|TRIM7|81786|tripartite motif containing 7	1.404357	0.0	denovo_WM_7:-38:0.220	denovo_WM_7:-41:0.227	denovo_WM_7:-53:0.315
chr8	67617414	67617545	reg1002226.p2	10.131	+	NM_001204173 NM_019607 TSC_hg19_v1_chr8_+_67579850 BX649057 BC014448	-37657	+	TSC_hg19_v1_chr8_-_67579486 CR936659	-37985	-	TSC_hg19_v1_chr8_-_67579447 AB058753 NM_025054	-38025	-	AK291428 NM_001033578 TSC_hg19_v1_chr8_+_67624708	7209	+	TSC_hg19_v1_chr8_+_67624989 CR933673	7489	+	NM_013257 NM_170709 TSC_hg19_v1_chr8_+_67687465 AK223523 AK074666	69976	+	NM_001204173|C8orf44-SGK3|100533105|C8orf44-SGK3 readthrough##NM_019607|C8orf44|56260|chromosome 8 open reading frame 44##BC014448|C8orf44|56260|chromosome 8 open reading frame 44##CR936659|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##AB058753|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##NM_025054|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##AK291428|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3##NM_001033578|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3##CR933673|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3##NM_013257|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3##NM_170709|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3##AK223523|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3##AK074666|SGK3|23678|serum/glucocorticoid regulated kinase family, member 3	0.994941	0.0	denovo_WM_7:48:0.332	denovo_WM_7:49:0.332	denovo_WM_7:50:0.332
chr8	81289964	81290144	reg1001965.p2	10.128	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-206284	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	-297025	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	-347552	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	108430	+	AK131274 NM_001033723	496961	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	734260	-	BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1	0.995692	0.0	denovo_WM_7:-5:0.481
chr4	47147855	47147989	reg1002176.p2	10.127	+	NM_000812 AK296023	-114575	+	AK090780 NM_000809	-151499	-	CU690038 DQ891679 DQ894864 EU176605 U30461 NM_001204266 NM_001204267 BC035055	-152426	-	TSC_hg19_v1_chr4_-_47465683 AY542163 BC015145 NM_017845 AK000509 BC019826 AF182421	317757	-	TSC_hg19_v1_chr4_-_47465720 BC008371	317806	-	TSC_hg19_v1_chr4_+_47487301 BC057839 BC108723 AJ441078 NM_020453 BC131535	339408	+	NM_000812|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AK296023|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AK090780|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_000809|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ891679|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ894864|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##EU176605|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##U30461|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204266|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204267|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##BC035055|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##AY542163|COMMD8|54951|COMM domain containing 8##BC015145|COMMD8|54951|COMM domain containing 8##NM_017845|COMMD8|54951|COMM domain containing 8##AK000509|COMMD8|54951|COMM domain containing 8##BC019826|COMMD8|54951|COMM domain containing 8##AF182421|COMMD8|54951|COMM domain containing 8##BC008371|COMMD8|54951|COMM domain containing 8##BC057839|ATP10D|57205|ATPase, class V, type 10D##AJ441078|ATP10D|57205|ATPase, class V, type 10D##NM_020453|ATP10D|57205|ATPase, class V, type 10D##BC131535|ATP10D|57205|ATPase, class V, type 10D	0.676026	0.0	denovo_WM_7:35:0.598
chr15	89600894	89601005	reg1001509.p1	10.124	+	BC003610 AK095908 AK222735 AK223182 AK304627 AK310357 AK312640 U58516 AY141974 TSC_hg19_v1_chr15_-_89456611 NM_001114614 NM_005928	-144310	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	-144389	-	AY358500 AY037161 TSC_hg19_v1_chr15_-_89438761 BC053689 AY262759 NM_178232 AK292055 BC062320 AK292103	-162151	-	NM_007011 NM_152924	30431	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	30699	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	30754	+	BC003610|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK095908|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK222735|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK223182|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK304627|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK310357|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK312640|MFGE8|4240|milk fat globule-EGF factor 8 protein##U58516|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY141974|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_001114614|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_005928|MFGE8|4240|milk fat globule-EGF factor 8 protein##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY358500|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY037161|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC053689|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY262759|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_178232|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292055|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC062320|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292103|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_007011|ABHD2|11057|abhydrolase domain containing 2##NM_152924|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2	0.984873	0.509789	CTCF.p2:-31:0.495
chr12	76034996	76035162	reg1002130.p1	10.123	+	BC005225 TSC_hg19_v1_chr12_-_75905414 NM_007043	-129660	-	BC033887 TSC_hg19_v1_chr12_-_75905393 BC014034 BC026107	-129684	-	AK022133 TSC_hg19_v1_chr12_-_75905382 BC016778 U55766	-129694	-	AF220656 TSC_hg19_v1_chr12_-_76424608	389468	-	TSC_hg19_v1_chr12_-_76425369 BC126425 BC130427 BC110820 U92983 BC018929	390211	-	TSC_hg19_v1_chr12_-_76425376 AK304224 AB587598 NM_007350 Z50194	390448	-	BC005225|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##NM_007043|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC033887|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC014034|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC026107|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AK022133|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC016778|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##U55766|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AF220656|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC126425|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC130427|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC110820|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##U92983|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC018929|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##AK304224|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##NM_007350|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##Z50194|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1	0.993982	0.0	denovo_WM_7:33:0.737	denovo_WM_7:35:0.235
chr12	120640140	120640320	reg1001048.p3	10.122	+	AK001313 AK129823 M17885 TSC_hg19_v1_chr12_-_120638914 NM_001002 NM_053275	-1268	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	-1320	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	-1329	-	BX648777 NM_025157	47729	-	TSC_hg19_v1_chr12_-_120703534 AK299486 BC136787 BC136794 BC144410 U14588 AB209034 AK298057 AK314204	63284	-	TSC_hg19_v1_chr12_-_120703574 NM_001080855 NM_001243756 NM_002859	63360	-	AK001313|RPLP0|6175|ribosomal protein, large, P0##AK129823|RPLP0|6175|ribosomal protein, large, P0##M17885|RPLP0|6175|ribosomal protein, large, P0##NM_001002|RPLP0|6175|ribosomal protein, large, P0##NM_053275|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##BX648777|PXN|5829|paxillin##NM_025157|PXN|5829|paxillin##AK299486|PXN|5829|paxillin##BC136787|PXN|5829|paxillin##BC136794|PXN|5829|paxillin##BC144410|PXN|5829|paxillin##U14588|PXN|5829|paxillin##AB209034|PXN|5829|paxillin##AK298057|PXN|5829|paxillin##AK314204|PXN|5829|paxillin##NM_001080855|PXN|5829|paxillin##NM_001243756|PXN|5829|paxillin##NM_002859|PXN|5829|paxillin	1.996467	0.0	denovo_WM_7:16:0.305	denovo_WM_7:17:0.244	denovo_WM_7:34:0.258	denovo_WM_7:35:0.319
chr19	49833291	49833471	reg1002210.p2	10.122	+	BC034948 BC039336 NM_014037	-4928	-	AK000048 TSC_hg19_v1_chr19_+_49669495	-163931	+	TSC_hg19_v1_chr19_+_49661048 AK074664 AF497623 AK292862 AY297044 AY297045 AY297046 AY046396 AJ575813 BC132727 BC144122 BC144123 AK295820	-172315	+	TSC_hg19_v1_chr19_+_49838662 AK301016	5277	+	TSC_hg19_v1_chr19_+_49838683 NM_001040031 NM_001774 AK301328	5297	+	TSC_hg19_v1_chr19_+_49838702 AL833693 BC110379	5331	+	BC034948|SLC6A16|28968|solute carrier family 6, member 16##NM_014037|SLC6A16|28968|solute carrier family 6, member 16##AK000048|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AF497623|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK292862|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297044|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297045|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297046|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY046396|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AJ575813|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC132727|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144122|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144123|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK295820|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK301016|CD37|951|CD37 molecule##NM_001040031|CD37|951|CD37 molecule##NM_001774|CD37|951|CD37 molecule##AK301328|CD37|951|CD37 molecule##AL833693|CD37|951|CD37 molecule##BC110379|CD37|951|CD37 molecule	0.998279	0.0	denovo_WM_7:-3:0.827
chr2	153323614	153323738	reg1002085.p2	10.121	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	-131703	+	TSC_hg19_v1_chr2_+_153191687 NM_052905	-132006	+	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	-291326	-	TSC_hg19_v1_chr2_-_153573924 U70667 AF049524 AF049528 BC000273 BC073138 BC011788 AF049523 AK298547 AK024810 BC029414 NM_017892	250244	-	TSC_hg19_v1_chr2_+_153574392 NM_152522 AK023109	250772	+	TSC_hg19_v1_chr2_+_153575123 AK315657	251439	+	BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2##NM_052905|FMNL2|114793|formin-like 2##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##U70667|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049524|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049528|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC000273|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC073138|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC011788|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049523|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK298547|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK024810|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC029414|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_017892|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_152522|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK023109|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK315657|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6	0.02044	0.0	
chr11	17320040	17320220	reg1002556.p2	10.119	+	TSC_hg19_v1_chr11_+_17298285 EU039832 EU039833 NM_005013 X76732 BC111556 AF450266	-21817	+	TSC_hg19_v1_chr11_-_17229534 AK309610 AK299474 AK304262 BC040952 BC031681 AK294416 BC035982 AK310248	-90633	-	Y13367 AB385161 HQ258691 BC113658 NM_002645	-128810	-	TSC_hg19_v1_chr11_+_17332454 BC172867	12353	+	TSC_hg19_v1_chr11_+_17373346 CR749521 NM_001202439 BX537685 BC136797 BC136800	53211	+	BC064497 NM_000525	90075	-	EU039832|NUCB2|4925|nucleobindin 2##EU039833|NUCB2|4925|nucleobindin 2##NM_005013|NUCB2|4925|nucleobindin 2##X76732|NUCB2|4925|nucleobindin 2##BC111556|NUCB2|4925|nucleobindin 2##AF450266|NUCB2|4925|nucleobindin 2##AK309610|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK299474|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK304262|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##BC040952|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##BC031681|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK294416|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##AK310248|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##Y13367|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##HQ258691|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##BC113658|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##NM_002645|PIK3C2A|5286|phosphoinositide-3-kinase, class 2, alpha polypeptide##CR749521|B7H6|374383|B7 homolog 6##NM_001202439|B7H6|374383|B7 homolog 6##BX537685|B7H6|374383|B7 homolog 6##BC136797|B7H6|374383|B7 homolog 6##BC136800|B7H6|374383|B7 homolog 6##BC064497|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_000525|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11	1.198601	0.0	denovo_WM_7:-2:0.364	denovo_WM_7:-3:0.364
chr7	99806846	99806992	reg1002104.p1	10.119	+	TSC_hg19_v1_chr7_+_99775540 NM_012447 AK292394 BC146806 AK302693 BC047490 BC028684 AL833816 BC140932	-31356	+	AJ007798 TSC_hg19_v1_chr7_+_99775380	-31555	+	AB587513 AM392909 CU693354 DQ893325 DQ896641 AL834418 TSC_hg19_v1_chr7_-_99774981 AB209144 AK096281 BC027972 NM_152742 AY093588	-31992	-	NM_024070	9951	+	BC065200 AK290510 TSC_hg19_v1_chr7_-_99869856 BC044886 BC090867 BC033723 BC053367 NM_178831	62911	-	BC056606 NM_001004351	98405	+	NM_012447|STAG3|10734|stromal antigen 3##AK292394|STAG3|10734|stromal antigen 3##BC146806|STAG3|10734|stromal antigen 3##AK302693|STAG3|10734|stromal antigen 3##BC047490|STAG3|10734|stromal antigen 3##BC028684|STAG3|10734|stromal antigen 3##AL833816|STAG3|10734|stromal antigen 3##BC140932|STAG3|10734|stromal antigen 3##AJ007798|STAG3|10734|stromal antigen 3##AM392909|GPC2|221914|glypican 2##DQ893325|GPC2|221914|glypican 2##DQ896641|GPC2|221914|glypican 2##AL834418|GPC2|221914|glypican 2##AK096281|GPC2|221914|glypican 2##BC027972|GPC2|221914|glypican 2##NM_152742|GPC2|221914|glypican 2##AY093588|GPC2|221914|glypican 2##NM_024070|PVRIG|79037|poliovirus receptor related immunoglobulin domain containing##BC065200|GATS|352954|GATS, stromal antigen 3 opposite strand##AK290510|GATS|352954|GATS, stromal antigen 3 opposite strand##BC044886|GATS|352954|GATS, stromal antigen 3 opposite strand##BC090867|GATS|352954|GATS, stromal antigen 3 opposite strand##BC033723|GATS|352954|GATS, stromal antigen 3 opposite strand##BC053367|GATS|352954|GATS, stromal antigen 3 opposite strand##NM_178831|GATS|352954|GATS, stromal antigen 3 opposite strand##BC056606|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##NM_001004351|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)	0.0	0.0	
chr1	45860055	45860235	reg1000159.p3	10.118	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-54245	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-54272	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-54316	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	96688	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	105794	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	127433	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	0.0	0.0	
chr10	74008054	74008234	reg1001942.p1	10.116	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-32033	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-32356	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-32380	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	25680	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	106534	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	106782	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	0.991474	0.0	denovo_WM_7:1:0.714	denovo_WM_7:2:0.277
chr10	112373579	112373714	reg1001940.p1	10.115	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-29531	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-46154	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	-115895	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	30483	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	257966	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	258068	+	AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)	0.993673	0.0	denovo_WM_7:-17:0.244	denovo_WM_7:-18:0.629
chr6	116989933	116990037	reg1001810.p1	10.115	+	TSC_hg19_v1_chr6_-_116989930 BX537872 BC016879 AK054582 AK307523 NM_145062	-49	-	AK299754 NM_001010892 NM_001161664 TSC_hg19_v1_chr6_+_116937643 BC022879 BC106949 AK095293	-52324	+	TSC_hg19_v1_chr6_+_116892710 BC008693 DQ892435 DQ892436 DQ892437 DQ895647 AB528403 CU677453	-97259	+	TSC_hg19_v1_chr6_+_117002373 NM_002269 AK314206 BC047409	12382	+	TSC_hg19_v1_chr6_-_117086883 BC038997 NM_001085480	96876	-	AF502962 NM_148963 AY435125 AY435126 AY435127	160222	-	BX537872|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##BC016879|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##AK054582|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##AK307523|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##NM_145062|ZUFSP|221302|zinc finger with UFM1-specific peptidase domain##AK299754|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##NM_001010892|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##NM_001161664|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##BC022879|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##BC106949|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##AK095293|RSPH4A|345895|radial spoke head 4 homolog A (Chlamydomonas)##BC008693|RWDD1|51389|RWD domain containing 1##DQ892435|RWDD1|51389|RWD domain containing 1##DQ892436|RWDD1|51389|RWD domain containing 1##DQ892437|RWDD1|51389|RWD domain containing 1##DQ895647|RWDD1|51389|RWD domain containing 1##NM_002269|KPNA5|3841|karyopherin alpha 5 (importin alpha 6)##AK314206|KPNA5|3841|karyopherin alpha 5 (importin alpha 6)##BC047409|KPNA5|3841|karyopherin alpha 5 (importin alpha 6)##BC038997|FAM162B|221303|family with sequence similarity 162, member B##NM_001085480|FAM162B|221303|family with sequence similarity 162, member B##AF502962|GPRC6A|222545|G protein-coupled receptor, family C, group 6, member A##NM_148963|GPRC6A|222545|G protein-coupled receptor, family C, group 6, member A##AY435125|GPRC6A|222545|G protein-coupled receptor, family C, group 6, member A##AY435126|GPRC6A|222545|G protein-coupled receptor, family C, group 6, member A##AY435127|GPRC6A|222545|G protein-coupled receptor, family C, group 6, member A	0.995287	0.0	
chr7	17528612	17528752	reg1002175.p1	10.115	+	TSC_hg19_v1_chr7_+_17382906 BC021696	-145776	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-190413	+	AY359065 BC058284 NM_176813	-607078	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	451367	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	451445	-	BC062797 BC005309 M57423 NM_175886	538783	-	BC021696|AHR|196|aryl hydrocarbon receptor##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1	0.995035	0.0	
chr8	134510711	134510833	reg1002142.p2	10.114	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-201275	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-307442	+	NM_001045556 NM_001045557	-395463	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	73325	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1198022	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1214307	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.943646	0.0	denovo_WM_7:-15:0.944
chr13	78326124	78326271	reg1002594.p1	10.113	+	NM_001242869 NM_001242870 NM_001242871 NM_144595 AL834203 AK289600 BC045177 AK289714 AK295423	-10791	+	AK294201 NM_001040153	-53182	+	TSC_hg19_v1_chr13_+_78271822 NM_001242868	-54293	+	TSC_hg19_v1_chr13_-_78492936 L06623 X99250 S44866 BC014472 AB209198 AK290699 NM_001122659 NM_003991	166755	-	AF114163 AF114164 TSC_hg19_v1_chr13_-_78493569	167354	-	AF114165 NM_001201397	167705	-	NM_001242869|SLAIN1|122060|SLAIN motif family, member 1##NM_001242870|SLAIN1|122060|SLAIN motif family, member 1##NM_001242871|SLAIN1|122060|SLAIN motif family, member 1##NM_144595|SLAIN1|122060|SLAIN motif family, member 1##AL834203|SLAIN1|122060|SLAIN motif family, member 1##AK289600|SLAIN1|122060|SLAIN motif family, member 1##BC045177|SLAIN1|122060|SLAIN motif family, member 1##AK289714|SLAIN1|122060|SLAIN motif family, member 1##AK295423|SLAIN1|122060|SLAIN motif family, member 1##AK294201|SLAIN1|122060|SLAIN motif family, member 1##NM_001040153|SLAIN1|122060|SLAIN motif family, member 1##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1##L06623|EDNRB|1910|endothelin receptor type B##X99250|EDNRB|1910|endothelin receptor type B##S44866|EDNRB|1910|endothelin receptor type B##BC014472|EDNRB|1910|endothelin receptor type B##AB209198|EDNRB|1910|endothelin receptor type B##AK290699|EDNRB|1910|endothelin receptor type B##NM_001122659|EDNRB|1910|endothelin receptor type B##NM_003991|EDNRB|1910|endothelin receptor type B##AF114165|EDNRB|1910|endothelin receptor type B##NM_001201397|EDNRB|1910|endothelin receptor type B	0.0	0.283231	CTCF.p2:-12:0.257
chr4	120383968	120384119	reg1002065.p2	10.112	+	TSC_hg19_v1_chr4_-_120375778 BC070391	-8265	-	CU686944 AK025079 BC069617 BC069466 BC069625 BC069637 BC111791 NM_000134	-140757	-	AY605045 NM_001170330	-158444	-	AM392687 AM392735 AM392945 AM393171 AM393311 AM393426 AM393432 AM393814 AY264918 AB015656 NM_033430 AF155193 TSC_hg19_v1_chr4_-_120548474	164362	-	TSC_hg19_v1_chr4_-_120549121 AF155194 NM_033437	165133	-	AB527373 AM393036 AM393270 AM393448 AK290189 BC126233 AJ004865 AF155192 TSC_hg19_v1_chr4_-_120549960 AF043731 NM_001083	165860	-	AK025079|FABP2|2169|fatty acid binding protein 2, intestinal##BC069617|FABP2|2169|fatty acid binding protein 2, intestinal##BC069466|FABP2|2169|fatty acid binding protein 2, intestinal##BC069625|FABP2|2169|fatty acid binding protein 2, intestinal##BC069637|FABP2|2169|fatty acid binding protein 2, intestinal##BC111791|FABP2|2169|fatty acid binding protein 2, intestinal##NM_000134|FABP2|2169|fatty acid binding protein 2, intestinal##AY605045|C4orf3|401152|chromosome 4 open reading frame 3##NM_001170330|C4orf3|401152|chromosome 4 open reading frame 3##AM392687|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM392735|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM392945|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393171|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393311|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393426|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393432|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393814|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AY264918|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AB015656|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##NM_033430|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AF155193|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AF155194|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##NM_033437|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393036|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393270|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393448|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AK290189|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##BC126233|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AJ004865|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AF155192|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AF043731|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##NM_001083|PDE5A|8654|phosphodiesterase 5A, cGMP-specific	0.99254	0.046519	
chr19	45194982	45195155	reg1002223.p1	10.106	+	BC083499 NM_001127893 NM_020219	-20345	+	TSC_hg19_v1_chr19_+_45147209 AK300349 AK094177 BC015542	-47852	+	TSC_hg19_v1_chr19_+_45147180 AK290946	-47887	+	BC144608 NM_001039213	7352	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	56913	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	86088	+	BC083499|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_001127893|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_020219|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##AK300349|PVR|5817|poliovirus receptor##AK094177|PVR|5817|poliovirus receptor##BC015542|PVR|5817|poliovirus receptor##AK290946|PVR|5817|poliovirus receptor##BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c	0.99204	0.0	denovo_WM_7:-4:0.837
chr17	40467571	40467719	reg1002227.p2	10.104	+	TSC_hg19_v1_chr17_+_40440515 AK301457 BC027036 AB208972 L41142	-27120	+	NM_003152 U43185	-28081	+	TSC_hg19_v1_chr17_-_40428410 U47686 AB208920 BC020868 BC065227 NM_012448	-39213	-	TSC_hg19_v1_chr17_-_40540461 BC014482 NM_213662 BC000627 BC029783 AK297994	72769	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	72887	-	TSC_hg19_v1_chr17_-_40540580 AK291933	72947	-	AK301457|STAT5A|6776|signal transducer and activator of transcription 5A##BC027036|STAT5A|6776|signal transducer and activator of transcription 5A##AB208972|STAT5A|6776|signal transducer and activator of transcription 5A##L41142|STAT5A|6776|signal transducer and activator of transcription 5A##NM_003152|STAT5A|6776|signal transducer and activator of transcription 5A##U43185|STAT5A|6776|signal transducer and activator of transcription 5A##U47686|STAT5B|6777|signal transducer and activator of transcription 5B##AB208920|STAT5B|6777|signal transducer and activator of transcription 5B##BC020868|STAT5B|6777|signal transducer and activator of transcription 5B##BC065227|STAT5B|6777|signal transducer and activator of transcription 5B##NM_012448|STAT5B|6777|signal transducer and activator of transcription 5B##BC014482|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_213662|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC000627|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC029783|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK297994|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)	0.0	0.0	
chr22	42322825	42322992	reg1002041.p1	10.104	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-109	-	NM_001207020	-12238	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-93637	+	EU035297 NM_001110215	13314	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	20215	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	50000	+	AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3	0.986143	0.0	denovo_WM_7:25:0.566	denovo_WM_7:28:0.377
chr13	80923059	80923208	reg1001922.p3	10.101	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-8069	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-10091	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-867578	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3533292	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3533367	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5450306	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.976389	0.0	denovo_WM_7:-15:0.471	denovo_WM_7:-16:0.505
chr5	65434527	65434649	reg1001067.p1	10.101	+	AK074288 TSC_hg19_v1_chr5_+_65372865	-61783	+	TSC_hg19_v1_chr5_+_65222567 BC126464 BC144075	-212008	+	TSC_hg19_v1_chr5_+_65222508 AF276423 BC050692	-212064	+	TSC_hg19_v1_chr5_+_65440053 NM_001077199	5472	+	TSC_hg19_v1_chr5_+_65440162 AK308287 BC017000 AK091758 AX747166 BC047322	5581	+	BC067770 NM_139168	6074	+	AK074288|ERBB2IP|55914|erbb2 interacting protein##BC126464|ERBB2IP|55914|erbb2 interacting protein##BC144075|ERBB2IP|55914|erbb2 interacting protein##AF276423|ERBB2IP|55914|erbb2 interacting protein##BC050692|ERBB2IP|55914|erbb2 interacting protein##NM_001077199|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##AK308287|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##BC017000|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##AK091758|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##BC047322|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##BC067770|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##NM_139168|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1	0.993071	0.0	
chr15	81626324	81626438	reg1002333.p1	10.097	+	AF480304 TSC_hg19_v1_chr15_-_81616503 BC004365 AK026352 AK097024 AK225479 AL137657 NM_181900	-9887	-	TSC_hg19_v1_chr15_+_81589328 NM_004513 U82972 AK222512 BC064911 BC050362	-37077	+	NM_172217 AY324389	-108692	+	NM_001080532 BC132679 BC143410 BC157874 AY263163 AY236490 BX640632	40104	-	AK094145 TSC_hg19_v1_chr15_-_82336883	710502	-	TSC_hg19_v1_chr15_-_82338360 AK131424 NM_032246	711985	-	AF480304|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##BC004365|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##AK026352|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##AK097024|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##AK225479|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##AL137657|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##NM_181900|STARD5|80765|StAR-related lipid transfer (START) domain containing 5##NM_004513|IL16|3603|interleukin 16##U82972|IL16|3603|interleukin 16##AK222512|IL16|3603|interleukin 16##BC064911|IL16|3603|interleukin 16##BC050362|IL16|3603|interleukin 16##NM_172217|IL16|3603|interleukin 16##AY324389|IL16|3603|interleukin 16##NM_001080532|TMC3|342125|transmembrane channel-like 3##BC132679|TMC3|342125|transmembrane channel-like 3##BC143410|TMC3|342125|transmembrane channel-like 3##BC157874|TMC3|342125|transmembrane channel-like 3##AY263163|TMC3|342125|transmembrane channel-like 3##AY236490|TMC3|342125|transmembrane channel-like 3##AK094145|MEX3B|84206|mex-3 homolog B (C. elegans)##AK131424|MEX3B|84206|mex-3 homolog B (C. elegans)##NM_032246|MEX3B|84206|mex-3 homolog B (C. elegans)	0.993913	0.0	denovo_WM_7:-40:0.981
chr2	191380656	191380799	reg1002126.p1	10.093	+	AK098085 TSC_hg19_v1_chr2_+_191301120	-79657	+	TSC_hg19_v1_chr2_+_191273080 AK127176 NM_017694	-107664	+	TSC_hg19_v1_chr2_+_191208645 BC106006	-172071	+	AK296987 TSC_hg19_v1_chr2_-_191399436	18700	-	TSC_hg19_v1_chr2_-_191399454 NM_001142645	18739	-	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	133239	+	AK098085|MFSD6|54842|major facilitator superfamily domain containing 6##AK127176|MFSD6|54842|major facilitator superfamily domain containing 6##NM_017694|MFSD6|54842|major facilitator superfamily domain containing 6##BC106006|INPP1|3628|inositol polyphosphate-1-phosphatase##AK296987|TMEM194B|100131211|transmembrane protein 194B##NM_001142645|TMEM194B|100131211|transmembrane protein 194B##NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)	0.058173	0.0	
chr4	88130903	88131069	reg1002090.p2	10.092	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-162735	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-202665	+	TSC_hg19_v1_chr4_+_87857481 L13743	-273503	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	10676	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	113039	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	181285	-	AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11	0.998095	0.0	
chr12	56769705	56769847	reg1001874.p3	10.091	+	CU693184 L27050 AK314892 BC026257 NM_001638 CR936663	-13210	-	TSC_hg19_v1_chr12_-_56753946 AK316516 AK295052 AK295114 NM_005419 NM_198332	-15800	-	TSC_hg19_v1_chr12_-_56753912 AK308051	-15863	-	TSC_hg19_v1_chr12_-_56843191 BC031514 AF098162 AK296869 BC039842 NM_003920	73417	-	HQ258134 BC074913 BC117474 NM_012064	78640	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	92576	+	L27050|APOF|319|apolipoprotein F##AK314892|APOF|319|apolipoprotein F##BC026257|APOF|319|apolipoprotein F##NM_001638|APOF|319|apolipoprotein F##CR936663|APOF|319|apolipoprotein F##AK316516|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295052|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295114|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_005419|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_198332|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK308051|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##BC031514|TIMELESS|8914|timeless homolog (Drosophila)##AF098162|TIMELESS|8914|timeless homolog (Drosophila)##AK296869|TIMELESS|8914|timeless homolog (Drosophila)##BC039842|TIMELESS|8914|timeless homolog (Drosophila)##NM_003920|TIMELESS|8914|timeless homolog (Drosophila)##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4	0.994986	0.0	denovo_WM_7:0:0.736
chr19	49384327	49384483	reg1002280.p1	10.090	+	DQ891855 EU176641 TSC_hg19_v1_chr19_+_49376488 AB464097 CR457259	-7916	+	TSC_hg19_v1_chr19_+_49375698 BC003067 U83981	-8708	+	AK001361 AK225632 AK296668 AK297615 AK298765 AK311366 TSC_hg19_v1_chr19_+_49375677	-8728	+	U82469 BC026070 NM_003323	17561	-	AK292066 NM_006184	18901	+	TSC_hg19_v1_chr19_+_49403601 AK315422 BX647718 AK303126 AK222805 M96824	19179	+	DQ891855|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##EU176641|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##CR457259|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##BC003067|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##U83981|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK001361|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK225632|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK296668|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK297615|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK298765|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##U82469|TULP2|7288|tubby like protein 2##BC026070|TULP2|7288|tubby like protein 2##NM_003323|TULP2|7288|tubby like protein 2##AK292066|NUCB1|4924|nucleobindin 1##NM_006184|NUCB1|4924|nucleobindin 1##AK315422|NUCB1|4924|nucleobindin 1##BX647718|NUCB1|4924|nucleobindin 1##AK303126|NUCB1|4924|nucleobindin 1##AK222805|NUCB1|4924|nucleobindin 1##M96824|NUCB1|4924|nucleobindin 1	1.995389	0.0	denovo_WM_7:53:0.308	denovo_WM_7:54:0.308	denovo_WM_7:55:0.303	denovo_WM_7:71:0.451	denovo_WM_7:72:0.454
chr16	53483832	53483951	reg1001992.p1	10.089	+	TSC_hg19_v1_chr16_+_53479685 BX537767	-4203	+	TSC_hg19_v1_chr16_+_53469560 AK300047	-14345	+	TSC_hg19_v1_chr16_+_53468409 S67171 X74594	-15334	+	TSC_hg19_v1_chr16_-_53537122 AK303503 BC001134 BC095401 AK222743 AK023320 NM_001012398 NM_022476	53249	-	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	253866	-	NM_001080432	253983	+	BX537767|RBL2|5934|retinoblastoma-like 2 (p130)##AK300047|RBL2|5934|retinoblastoma-like 2 (p130)##S67171|RBL2|5934|retinoblastoma-like 2 (p130)##X74594|RBL2|5934|retinoblastoma-like 2 (p130)##AK303503|AKTIP|64400|AKT interacting protein##BC001134|AKTIP|64400|AKT interacting protein##BC095401|AKTIP|64400|AKT interacting protein##AK222743|AKTIP|64400|AKT interacting protein##AK023320|AKTIP|64400|AKT interacting protein##NM_001012398|AKTIP|64400|AKT interacting protein##NM_022476|AKTIP|64400|AKT interacting protein##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##NM_001080432|FTO|79068|fat mass and obesity associated	0.998203	0.0	
chr17	9317988	9318107	reg1001584.p1	10.089	+	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	-393080	+	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	-449066	-	AY725853 AF128881 NM_014308	-502231	-	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	161084	-	TSC_hg19_v1_chr17_-_9479156 BC009713 AF062077 AF115323 NM_004853	161159	-	NM_001080556 NM_145054 AK074435 AB065281 BC025392 AK094847 AK315679 CU692990	161930	+	NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8##BC009713|STX8|9482|syntaxin 8##AF062077|STX8|9482|syntaxin 8##AF115323|STX8|9482|syntaxin 8##NM_004853|STX8|9482|syntaxin 8##NM_001080556|WDR16|146845|WD repeat domain 16##NM_145054|WDR16|146845|WD repeat domain 16##AK074435|WDR16|146845|WD repeat domain 16##AB065281|WDR16|146845|WD repeat domain 16##BC025392|WDR16|146845|WD repeat domain 16##AK094847|WDR16|146845|WD repeat domain 16##AK315679|WDR16|146845|WD repeat domain 16	0.999578	0.0	
chrX	1599975	1600125	reg1001501.p3	10.089	+	AK301844 NM_001173473	-27399	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-28249	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-89081	-	BC043610 GQ280263 NM_178129 AK126147	55988	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	110479	+	NM_004043 U11090	114297	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.993472	0.0	denovo_WM_7:22:0.993
chr13	50703327	50703466	reg1002788.p1	10.088	+	TSC_hg19_v1_chr13_-_50699781 AF380424	-3581	-	AJ412023 AJ412024 AJ412025 AJ412026 AJ412038 AJ412039 AJ412054 AJ412055 AJ412056 AJ412057 AJ412058 AJ412059 AJ412060 AJ412061 AJ412062 Y15227 TSC_hg19_v1_chr13_+_50656364 BC004131 AK312167 BC020692 AK095311	-47051	+	TSC_hg19_v1_chr13_-_50656128 BC038090 AF264787 Y15228 BC022349 BC006995 BC026275 BC030971 BC070292 BC055417 BC017819 BC022282	-47247	-	AJ412041 AJ412042 AJ412043 TSC_hg19_v1_chr13_+_50760088	56657	+	AY357595 BC104892 BC112009 NM_198989 AK303567 AK126830	714556	-	NM_001142279 NM_024570 TSC_hg19_v1_chr13_+_51483898	780460	+	AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AJ412023|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412024|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412061|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412062|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##Y15227|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC020692|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AK095311|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC038090|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AF264787|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##Y15228|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##BC070292|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##BC055417|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AY357595|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC104892|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC112009|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_198989|DLEU7|220107|deleted in lymphocytic leukemia, 7##AK126830|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_001142279|RNASEH2B|79621|ribonuclease H2, subunit B##NM_024570|RNASEH2B|79621|ribonuclease H2, subunit B	0.998654	0.0	denovo_WM_7:9:0.304	denovo_WM_7:10:0.426
chr3	113932620	113932800	reg1001913.p1	10.088	+	AY228457 AY228458 NM_000796 NM_033663 AY228454	-34794	-	TSC_hg19_v1_chr3_+_113775661 AK023022	-157036	+	TSC_hg19_v1_chr3_+_113775628 AK299313 BC039265 NM_024638 AL833709 AK296938	-157104	+	NM_007136 X65233	23714	-	EU675310 NM_173799 AK097192 BC101288 BC101289 BC101290 BC101291	80143	+	AF139460 NM_001164342	169778	-	AY228457|DRD3|1814|dopamine receptor D3##AY228458|DRD3|1814|dopamine receptor D3##NM_000796|DRD3|1814|dopamine receptor D3##NM_033663|DRD3|1814|dopamine receptor D3##AY228454|DRD3|1814|dopamine receptor D3##AK023022|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK299313|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##BC039265|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##NM_024638|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AL833709|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK296938|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##NM_007136|ZNF80|7634|zinc finger protein 80##X65233|ZNF80|7634|zinc finger protein 80##EU675310|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_173799|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AK097192|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101288|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101289|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101290|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101291|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AF139460|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164342|ZBTB20|26137|zinc finger and BTB domain containing 20	1.972486	0.363181	denovo_WM_7:1:0.305	denovo_WM_7:2:0.305	denovo_WM_7:3:0.305	denovo_WM_7:-71:0.965	CTCF.p2:-105:0.230
chr5	131856507	131856657	reg1001601.p1	10.088	+	X14454 BC009483 AK298770 AK314025 NM_002198 TSC_hg19_v1_chr5_-_131826466	-30101	-	TSC_hg19_v1_chr5_+_131746621 AK096941 AK309191 AK128882	-109954	+	TSC_hg19_v1_chr5_+_131705407 NM_003060 AF057164 BC012325 AB015050 AK313230 CU680286 DQ893671 DQ895818 AB291606	-151074	+	AB591005 BC066279 BC066280 BC066281 BC066282 BC069137 NM_000879 X04688 X12705	22610	-	TSC_hg19_v1_chr5_+_131892670 NM_005732 BC140005 U63139 AK290597 BC108282 AF057299 AF057300 BC062603 BC073850 BC136436	36058	+	BC096138 BC096139 BC096140 BC096141 NM_002188 X69079 AB463799 L06801 AF043334	137308	+	X14454|IRF1|3659|interferon regulatory factor 1##BC009483|IRF1|3659|interferon regulatory factor 1##AK298770|IRF1|3659|interferon regulatory factor 1##AK314025|IRF1|3659|interferon regulatory factor 1##NM_002198|IRF1|3659|interferon regulatory factor 1##AK096941|C5orf56|441108|chromosome 5 open reading frame 56##AK309191|C5orf56|441108|chromosome 5 open reading frame 56##AK128882|C5orf56|441108|chromosome 5 open reading frame 56##NM_003060|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AF057164|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC012325|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB015050|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK313230|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ893671|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ895818|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB291606|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC066279|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066280|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066281|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066282|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC069137|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_000879|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X04688|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X12705|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_005732|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC140005|RAD50|10111|RAD50 homolog (S. cerevisiae)##U63139|RAD50|10111|RAD50 homolog (S. cerevisiae)##AK290597|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC108282|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057299|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057300|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC062603|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC073850|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC136436|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC096138|IL13|3596|interleukin 13##BC096139|IL13|3596|interleukin 13##BC096140|IL13|3596|interleukin 13##BC096141|IL13|3596|interleukin 13##NM_002188|IL13|3596|interleukin 13##X69079|IL13|3596|interleukin 13##L06801|IL13|3596|interleukin 13##AF043334|IL13|3596|interleukin 13	1.065972	0.0	denovo_WM_7:-42:0.842
chr8	614075	614219	reg1002026.p2	10.086	+	NM_175075	-118817	-	TSC_hg19_v1_chr8_-_494835 AY194292 FJ381685 BC136248 BC136249	-119232	-	TSC_hg19_v1_chr8_+_356957 BC050393	-257163	+	TSC_hg19_v1_chr8_-_681182 EU832095 EU832187 AF161437	67033	-	TSC_hg19_v1_chr8_-_681204 AK297476	67064	-	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	67084	-	NM_175075|C8orf42|157695|chromosome 8 open reading frame 42##AY194292|C8orf42|157695|chromosome 8 open reading frame 42##BC136248|C8orf42|157695|chromosome 8 open reading frame 42##BC136249|C8orf42|157695|chromosome 8 open reading frame 42##BC050393|FBXO25|26260|F-box protein 25##EU832095|ERICH1|157697|glutamate-rich 1##EU832187|ERICH1|157697|glutamate-rich 1##AF161437|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1	0.087096	0.0	
chr15	77269080	77269201	reg1001877.p1	10.085	+	TSC_hg19_v1_chr15_+_77224095 NM_002902 AK313833 X78669 BC004892 BT009790 CU678788	-45068	+	AB040887 TSC_hg19_v1_chr15_-_77197781 AK056095	-71369	-	TSC_hg19_v1_chr15_-_77197682 BC070197 BC107415 AK056515	-71476	-	TSC_hg19_v1_chr15_+_77287465 AK309856 NM_003978 AK310126 BC008602	18350	+	AK304052 U94778 AK316220 TSC_hg19_v1_chr15_+_77287720 AK298733	18566	+	TSC_hg19_v1_chr15_+_77287743 AK310072 AB451310 AB451440 AF038602 AF038603 DQ891779 DQ894963 AB528365	18687	+	NM_002902|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AK313833|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##X78669|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BC004892|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BT009790|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AB040887|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056095|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC070197|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC107415|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056515|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK309856|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##NM_003978|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310126|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##BC008602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK304052|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##U94778|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK316220|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK298733|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310072|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451310|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451440|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038603|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ891779|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ894963|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1	0.997878	0.0	denovo_WM_7:25:0.298	denovo_WM_7:26:0.298	denovo_WM_7:27:0.298
chr22	38573342	38573452	reg1001380.p2	10.085	+	TSC_hg19_v1_chr22_-_38506676 AY358164 NM_025045	-66720	-	CU677367 TSC_hg19_v1_chr22_-_38506639 AK026235 BC015619	-66795	-	AF132610 NM_013356	-94239	-	CR456543 TSC_hg19_v1_chr22_-_38577838 AK291212 BC036742 AL080187 NM_001004426 NM_003560 AF064594 AK308308 BC051904 AK096521 AK290825 NM_001199562 AK300459	4396	-	NM_001161572 NM_001161574 NM_012323 TSC_hg19_v1_chr22_+_38597996 AK002001 BC067751 AK300932 AJ010857	24580	+	BC015037 TSC_hg19_v1_chr22_+_38598094 AB025247	24689	+	AY358164|BAIAP2L2|80115|BAI1-associated protein 2-like 2##NM_025045|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AK026235|BAIAP2L2|80115|BAI1-associated protein 2-like 2##BC015619|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AF132610|SLC16A8|23539|solute carrier family 16, member 8 (monocarboxylic acid transporter 3)##NM_013356|SLC16A8|23539|solute carrier family 16, member 8 (monocarboxylic acid transporter 3)##CR456543|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK291212|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC036742|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AL080187|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001004426|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_003560|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AF064594|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK308308|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC051904|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK096521|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK290825|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001199562|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK300459|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001161572|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_001161574|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_012323|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK002001|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC067751|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK300932|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AJ010857|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC015037|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AB025247|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)	0.999494	0.0	
chr3	106021354	106021531	reg1001954.p1	10.083	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-433635	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-600388	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-935620	+	TSC_hg19_v1_chr3_-_106959482 BC036229	938037	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	938150	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1074868	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.0	0.016721	
chr1	45859770	45859928	reg1000159.p2	10.082	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-53949	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-53976	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-54020	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	96984	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	106090	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	127729	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	0.083739	0.0	
chr2	118444476	118444609	reg1002195.p1	10.082	+	NM_001178034 DQ857322 AK296490 NM_001004360 AY387785 AB040925 AB385475 DQ857323	-2524881	+	NM_001178037 DQ857321	-2622252	+	AK055256 BC038514 NM_001178036	-3225376	+	NM_006773 TSC_hg19_v1_chr2_+_118572276 BC024739	127726	+	AK001467 TSC_hg19_v1_chr2_+_118572283	127741	+	TSC_hg19_v1_chr2_+_118572298 BC003360 BC001238	127775	+	NM_001178034|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857322|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK296490|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001004360|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AY387785|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AB040925|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857323|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178037|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857321|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_006773|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##BC024739|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##AK001467|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##BC003360|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##BC001238|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.0	0.0	
chr19	19777369	19777523	reg1001908.p1	10.081	+	TSC_hg19_v1_chr19_-_19774501 NM_020410	-2937	-	AB058728 AB385506 TSC_hg19_v1_chr19_-_19774486 AK056420	-2962	-	TSC_hg19_v1_chr19_-_19754452 NM_016573	-22991	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	2211	+	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	66401	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	109759	-	NM_020410|ATP13A1|57130|ATPase type 13A1##AB058728|ATP13A1|57130|ATPase type 13A1##AK056420|ATP13A1|57130|ATPase type 13A1##NM_016573|GMIP|51291|GEM interacting protein##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440	2.502973	0.0	denovo_WM_7:6:0.342	denovo_WM_7:-9:0.227	denovo_WM_7:-24:0.319
chr22	42015074	42015181	reg1001795.p1	10.081	+	CU013144 CU013432 AB528210 AK316580 U62526 U86070 CR456544 BC010855 D87810 TSC_hg19_v1_chr22_-_41985841 AK289368 BC016818 NM_002676	-29287	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	-58058	+	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	-74627	-	AB528118 CU013008 CU013296 CR456458 BC093956 BC112179 BC171724 TSC_hg19_v1_chr22_-_42017031 AF038183	1809	-	TSC_hg19_v1_chr22_-_42017032 NM_015704	1940	-	TSC_hg19_v1_chr22_+_42017271 AK315618 NM_001469	2149	+	CU013144|PMM1|5372|phosphomannomutase 1##CU013432|PMM1|5372|phosphomannomutase 1##AK316580|PMM1|5372|phosphomannomutase 1##U62526|PMM1|5372|phosphomannomutase 1##U86070|PMM1|5372|phosphomannomutase 1##CR456544|PMM1|5372|phosphomannomutase 1##BC010855|PMM1|5372|phosphomannomutase 1##D87810|PMM1|5372|phosphomannomutase 1##AK289368|PMM1|5372|phosphomannomutase 1##BC016818|PMM1|5372|phosphomannomutase 1##NM_002676|PMM1|5372|phosphomannomutase 1##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456458|PPPDE2|27351|PPPDE peptidase domain containing 2##BC093956|PPPDE2|27351|PPPDE peptidase domain containing 2##BC112179|PPPDE2|27351|PPPDE peptidase domain containing 2##BC171724|PPPDE2|27351|PPPDE peptidase domain containing 2##AF038183|PPPDE2|27351|PPPDE peptidase domain containing 2##NM_015704|PPPDE2|27351|PPPDE peptidase domain containing 2##AK315618|XRCC6|2547|X-ray repair complementing defective repair in Chinese hamster cells 6##NM_001469|XRCC6|2547|X-ray repair complementing defective repair in Chinese hamster cells 6	0.816825	0.0	denovo_WM_7:-38:0.331	denovo_WM_7:-51:0.486
chr17	75378717	75378852	reg1002217.p1	10.077	+	AB023208 NM_001113494 AJ312322	-6615	+	TSC_hg19_v1_chr17_+_75369418 AK304143	-9359	+	TSC_hg19_v1_chr17_+_75369236 AJ312319 NM_001113493	-9531	+	NM_001113496 TSC_hg19_v1_chr17_+_75446637	67861	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	67998	+	AK299828 TSC_hg19_v1_chr17_+_75447450	68605	+	AB023208|SEPT9|10801|septin 9##NM_001113494|SEPT9|10801|septin 9##AJ312322|SEPT9|10801|septin 9##AK304143|SEPT9|10801|septin 9##AJ312319|SEPT9|10801|septin 9##NM_001113493|SEPT9|10801|septin 9##NM_001113496|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9	0.151581	0.0	
chr20	10532980	10533143	reg1002019.p2	10.077	+	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-117085	+	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	-118222	-	AF221993 NM_018848	-120492	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	121143	-	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	121508	-	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	1338388	+	BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3	1.397195	0.0	denovo_WM_7:-1:0.525	denovo_WM_7:-12:0.269	denovo_WM_7:-17:0.295
chr5	139421196	139421344	reg1002272.p1	10.075	+	TSC_hg19_v1_chr5_+_139175392 AL136559 NM_032289 BC038233	-245864	+	TSC_hg19_v1_chr5_+_139060403 DQ892589 DQ895807	-360878	+	AF151029 TSC_hg19_v1_chr5_+_139060229	-361058	+	BC103983 BC103984 BC114333 BC114334 TSC_hg19_v1_chr5_-_139422732	1458	-	U92987 TSC_hg19_v1_chr5_-_139422858 AB005060 AK124504 NM_001184935 NM_004883 NM_013981 NM_013982 NM_013983	1575	-	TSC_hg19_v1_chr5_+_139493703 M96684 NM_005859 BC110574 BC110594 BC036087 AB464679 BT019388	72457	+	AL136559|PSD2|84249|pleckstrin and Sec7 domain containing 2##NM_032289|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC038233|PSD2|84249|pleckstrin and Sec7 domain containing 2##DQ892589|CXXC5|51523|CXXC finger protein 5##DQ895807|CXXC5|51523|CXXC finger protein 5##AF151029|CXXC5|51523|CXXC finger protein 5##BC103983|NRG2|9542|neuregulin 2##BC103984|NRG2|9542|neuregulin 2##BC114333|NRG2|9542|neuregulin 2##BC114334|NRG2|9542|neuregulin 2##U92987|NRG2|9542|neuregulin 2##AB005060|NRG2|9542|neuregulin 2##AK124504|NRG2|9542|neuregulin 2##NM_001184935|NRG2|9542|neuregulin 2##NM_004883|NRG2|9542|neuregulin 2##NM_013981|NRG2|9542|neuregulin 2##NM_013982|NRG2|9542|neuregulin 2##NM_013983|NRG2|9542|neuregulin 2##M96684|PURA|5813|purine-rich element binding protein A##NM_005859|PURA|5813|purine-rich element binding protein A##BC110574|PURA|5813|purine-rich element binding protein A##BC110594|PURA|5813|purine-rich element binding protein A##BC036087|PURA|5813|purine-rich element binding protein A##BT019388|PURA|5813|purine-rich element binding protein A	0.998752	0.0	
chrX	115010511	115010641	reg1000007.p3	10.073	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-182708	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-213534	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-214970	+	BC003645 TSC_hg19_v1_chrX_-_115085443	74863	-	AK313927 NM_000686 X87723 U16957	291419	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	557191	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.129318	
chr6	113966200	113966380	reg1002185.p2	10.072	+	AK122906 NM_001013734	-1297759	+	TSC_hg19_v1_chr6_-_112575881 BC066552	-1390395	-	TSC_hg19_v1_chr6_-_112575770 AB210027 X91171 NM_001105206 NM_001105207 NM_001105208 NM_001105209 NM_002290	-1390485	-	TSC_hg19_v1_chr6_+_114178543 AK074526 NM_002356 BC013004 BC028284 BC068059 D10522 M68956 BC089040 EU832331 EU832416 AB463910	212444	+	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	325982	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	326046	-	AK122906|RFPL4B|442247|ret finger protein-like 4B##NM_001013734|RFPL4B|442247|ret finger protein-like 4B##BC066552|LAMA4|3910|laminin, alpha 4##AB210027|LAMA4|3910|laminin, alpha 4##X91171|LAMA4|3910|laminin, alpha 4##NM_001105206|LAMA4|3910|laminin, alpha 4##NM_001105207|LAMA4|3910|laminin, alpha 4##NM_001105208|LAMA4|3910|laminin, alpha 4##NM_001105209|LAMA4|3910|laminin, alpha 4##NM_002290|LAMA4|3910|laminin, alpha 4##AK074526|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##NM_002356|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC013004|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC028284|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC068059|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##D10522|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##M68956|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC089040|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832331|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832416|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2	0.994642	0.0	
chr16	88749006	88749155	reg1001896.p3	10.071	+	TSC_hg19_v1_chr16_+_88729781 BC015583 BC050404	-19285	+	TSC_hg19_v1_chr16_+_88729753 BX640980	-19329	+	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	-19563	-	BC041461 AB464228 TSC_hg19_v1_chr16_-_88752874	3751	-	TSC_hg19_v1_chr16_-_88752882 BC107058 NM_178310	3811	-	AK057106 NM_001171816	20944	-	BC015583|MGC23284|197187|uncharacterized LOC197187##BC050404|MGC23284|197187|uncharacterized LOC197187##BX640980|MGC23284|197187|uncharacterized LOC197187##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##BC041461|SNAI3|333929|snail homolog 3 (Drosophila)##BC107058|SNAI3|333929|snail homolog 3 (Drosophila)##NM_178310|SNAI3|333929|snail homolog 3 (Drosophila)##AK057106|RNF166|115992|ring finger protein 166##NM_001171816|RNF166|115992|ring finger protein 166	0.999783	0.0	denovo_WM_7:98:0.845
chr13	45941541	45941677	reg1002094.p1	10.069	+	AF318337 TSC_hg19_v1_chr13_+_45915726 AK124332	-25996	+	TSC_hg19_v1_chr13_-_45915319 AK130847 AK296587 AK296952 AK312951 AY117678 D28408 BC022436	-26245	-	BC012431 TSC_hg19_v1_chr13_-_45915280 X64899 BC040008 NM_003295 X16064 AF072098 BC007842 BC003352 BC052333	-26317	-	TSC_hg19_v1_chr13_-_45992456 BC129808	50851	-	TSC_hg19_v1_chr13_-_45992486 BC132739 BC136760 BC144401 AK094133 AK095465 AK302967 NM_001010875	50885	-	TSC_hg19_v1_chr13_+_46039081 NM_031431 AF349676 AF332595 AK026305 AK225466 AK225952 BX648211 AK294959 AK304248 AK314387 BC038953 CU691622	97488	+	AF318337|LOC100190939|100190939|uncharacterized LOC100190939##AK124332|LOC100190939|100190939|uncharacterized LOC100190939##AK130847|TPT1|7178|tumor protein, translationally-controlled 1##AK296587|TPT1|7178|tumor protein, translationally-controlled 1##AK296952|TPT1|7178|tumor protein, translationally-controlled 1##AK312951|TPT1|7178|tumor protein, translationally-controlled 1##AY117678|TPT1|7178|tumor protein, translationally-controlled 1##BC022436|TPT1|7178|tumor protein, translationally-controlled 1##BC012431|TPT1|7178|tumor protein, translationally-controlled 1##X64899|TPT1|7178|tumor protein, translationally-controlled 1##BC040008|TPT1|7178|tumor protein, translationally-controlled 1##NM_003295|TPT1|7178|tumor protein, translationally-controlled 1##X16064|TPT1|7178|tumor protein, translationally-controlled 1##BC007842|TPT1|7178|tumor protein, translationally-controlled 1##BC003352|TPT1|7178|tumor protein, translationally-controlled 1##BC052333|TPT1|7178|tumor protein, translationally-controlled 1##BC129808|SLC25A30|253512|solute carrier family 25, member 30##BC132739|SLC25A30|253512|solute carrier family 25, member 30##BC136760|SLC25A30|253512|solute carrier family 25, member 30##BC144401|SLC25A30|253512|solute carrier family 25, member 30##AK094133|SLC25A30|253512|solute carrier family 25, member 30##AK095465|SLC25A30|253512|solute carrier family 25, member 30##AK302967|SLC25A30|253512|solute carrier family 25, member 30##NM_001010875|SLC25A30|253512|solute carrier family 25, member 30##NM_031431|COG3|83548|component of oligomeric golgi complex 3##AF349676|COG3|83548|component of oligomeric golgi complex 3##AF332595|COG3|83548|component of oligomeric golgi complex 3##AK026305|COG3|83548|component of oligomeric golgi complex 3##AK225466|COG3|83548|component of oligomeric golgi complex 3##AK225952|COG3|83548|component of oligomeric golgi complex 3##BX648211|COG3|83548|component of oligomeric golgi complex 3##AK294959|COG3|83548|component of oligomeric golgi complex 3##AK304248|COG3|83548|component of oligomeric golgi complex 3##AK314387|COG3|83548|component of oligomeric golgi complex 3##BC038953|COG3|83548|component of oligomeric golgi complex 3	0.994328	0.0	denovo_WM_7:9:0.363	denovo_WM_7:10:0.631
chrX	123018764	123018889	reg1001728.p1	10.068	+	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	-24884	+	TSC_hg19_v1_chrX_-_122866897 NM_001081550	-151929	-	TSC_hg19_v1_chrX_-_122866885 AK001758	-151943	-	TSC_hg19_v1_chrX_+_123094397 NM_001042749 AK098737 BX640970 AK298633 AK313559	75698	+	NM_001042750 NM_001042751 NM_006603 TSC_hg19_v1_chrX_+_123095573 AL831939 BX641002 CR749433 BX641003	76747	+	TSC_hg19_v1_chrX_+_123095638 BC001765	76811	+	AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis##NM_001081550|THOC2|57187|THO complex 2##AK001758|THOC2|57187|THO complex 2##NM_001042749|STAG2|10735|stromal antigen 2##AK098737|STAG2|10735|stromal antigen 2##BX640970|STAG2|10735|stromal antigen 2##AK298633|STAG2|10735|stromal antigen 2##AK313559|STAG2|10735|stromal antigen 2##NM_001042750|STAG2|10735|stromal antigen 2##NM_001042751|STAG2|10735|stromal antigen 2##NM_006603|STAG2|10735|stromal antigen 2##AL831939|STAG2|10735|stromal antigen 2##BX641002|STAG2|10735|stromal antigen 2##CR749433|STAG2|10735|stromal antigen 2##BX641003|STAG2|10735|stromal antigen 2##BC001765|STAG2|10735|stromal antigen 2	0.757353	0.79058	denovo_WM_7:-26:0.437	CTCF.p2:34:0.774
chr11	120363309	120363487	reg1002102.p1	10.067	+	BC063117 NM_001198665 NM_015313	-155781	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	-156294	+	AK096207 AK304086 TSC_hg19_v1_chr11_+_120196007 AK289680 AK294713 BC015232	-167380	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	19067	+	AB384776 NM_014619 S67803	167629	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	531412	+	BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK096207|TMEM136|219902|transmembrane protein 136##AK304086|TMEM136|219902|transmembrane protein 136##AK289680|TMEM136|219902|transmembrane protein 136##AK294713|TMEM136|219902|transmembrane protein 136##BC015232|TMEM136|219902|transmembrane protein 136##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like	2.657262	0.0	denovo_WM_7:24:0.553	denovo_WM_7:46:0.423	denovo_WM_7:61:0.332	denovo_WM_7:62:0.363
chr3	149320346	149320513	reg1002131.p1	10.067	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-127940	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-128027	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-224887	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	55306	-	AK022036 NM_001168278	100630	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	149810	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.0	0.02538	
chr7	73656235	73656384	reg1002204.p1	10.067	+	TSC_hg19_v1_chr7_+_73624361 AF252613	-31955	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	-31973	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	-32027	+	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	12402	-	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	12427	-	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	47478	+	AF252613|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2	0.600028	0.0	denovo_WM_7:-13:0.547
chrX	11155767	11155880	reg1001377.p1	10.067	+	TSC_hg19_v1_chrX_+_11129467 BC001691 BC095455 U36787	-26354	+	NM_001122608 NM_001171991 NM_005333 AK097815 TSC_hg19_v1_chrX_+_11129447 CR749578	-26393	+	NM_033290	-304015	-	AF177663 NM_013423 AK297713	128285	-	AF436849 BC069118 M86932 NM_001142 NM_182680 NM_182681 BC074951	155719	+	AF012272 AF022212 AF117067 NM_006125 NM_013427	527997	-	BC001691|HCCS|3052|holocytochrome c synthase##BC095455|HCCS|3052|holocytochrome c synthase##U36787|HCCS|3052|holocytochrome c synthase##NM_001122608|HCCS|3052|holocytochrome c synthase##NM_001171991|HCCS|3052|holocytochrome c synthase##NM_005333|HCCS|3052|holocytochrome c synthase##AK097815|HCCS|3052|holocytochrome c synthase##CR749578|HCCS|3052|holocytochrome c synthase##NM_033290|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF177663|ARHGAP6|395|Rho GTPase activating protein 6##NM_013423|ARHGAP6|395|Rho GTPase activating protein 6##AK297713|ARHGAP6|395|Rho GTPase activating protein 6##AF436849|AMELX|265|amelogenin, X-linked##BC069118|AMELX|265|amelogenin, X-linked##M86932|AMELX|265|amelogenin, X-linked##NM_001142|AMELX|265|amelogenin, X-linked##NM_182680|AMELX|265|amelogenin, X-linked##NM_182681|AMELX|265|amelogenin, X-linked##BC074951|AMELX|265|amelogenin, X-linked##AF012272|ARHGAP6|395|Rho GTPase activating protein 6##AF022212|ARHGAP6|395|Rho GTPase activating protein 6##AF117067|ARHGAP6|395|Rho GTPase activating protein 6##NM_006125|ARHGAP6|395|Rho GTPase activating protein 6##NM_013427|ARHGAP6|395|Rho GTPase activating protein 6	0.997883	0.995685	CTCF.p2:26:0.996	denovo_WM_7:-52:0.871
chr10	120879922	120880094	reg1001611.p3	10.061	+	TSC_hg19_v1_chr10_+_120863628 AF168713 AK000031 AK297633 AK297971 AK293136 BC022271 CU687018 CU692524	-16368	+	NM_207009 TSC_hg19_v1_chr10_+_120863621	-16391	+	TSC_hg19_v1_chr10_+_120863593 AK293365	-16428	+	CU687762 AY269785 TSC_hg19_v1_chr10_-_120925213 AK095295 BC063562 BC050475 NM_213649	45179	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	58295	-	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	58339	-	AF168713|FAM45A|404636|family with sequence similarity 45, member A##AK000031|FAM45A|404636|family with sequence similarity 45, member A##AK297633|FAM45A|404636|family with sequence similarity 45, member A##AK297971|FAM45B|55855|family with sequence similarity 45, member A pseudogene##AK293136|FAM45A|404636|family with sequence similarity 45, member A##BC022271|FAM45A|404636|family with sequence similarity 45, member A##NM_207009|FAM45A|404636|family with sequence similarity 45, member A##AK293365|FAM45A|404636|family with sequence similarity 45, member A##AY269785|SFXN4|119559|sideroflexin 4##AK095295|SFXN4|119559|sideroflexin 4##BC063562|SFXN4|119559|sideroflexin 4##BC050475|SFXN4|119559|sideroflexin 4##NM_213649|SFXN4|119559|sideroflexin 4##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3	0.0	0.0	
chr5	79603503	79603610	reg1002030.p1	10.057	+	BC101280 BC101281 BC101282 BC101283 TSC_hg19_v1_chr5_-_79551866 AF498273 AK297467 NM_001174071 NM_001174072 NM_178276	-51671	-	BC050456 TSC_hg19_v1_chr5_+_79331170 NM_003248 AK313587 Z19585	-272392	+	TSC_hg19_v1_chr5_-_79287069 AK091375 AX746944 BX538064 BC150295 AK296864 BX647596 NM_001010891 NM_001167741	-316598	-	NM_032567 AK098575 AK314007 AF333098 BC033798	12259	+	TSC_hg19_v1_chr5_+_79703879 NM_001105251 NM_014733 BC032227 BX537424 CR933621 AB002303 BC030808	100297	+	AY358256 NM_205548 BC142990 TSC_hg19_v1_chr5_+_79783828 BC131563	180277	+	BC101280|SERINC5|256987|serine incorporator 5##BC101281|SERINC5|256987|serine incorporator 5##BC101282|SERINC5|256987|serine incorporator 5##BC101283|SERINC5|256987|serine incorporator 5##AF498273|SERINC5|256987|serine incorporator 5##AK297467|SERINC5|256987|serine incorporator 5##NM_001174071|SERINC5|256987|serine incorporator 5##NM_001174072|SERINC5|256987|serine incorporator 5##NM_178276|SERINC5|256987|serine incorporator 5##BC050456|THBS4|7060|thrombospondin 4##NM_003248|THBS4|7060|thrombospondin 4##AK313587|THBS4|7060|thrombospondin 4##Z19585|THBS4|7060|thrombospondin 4##AK091375|MTX3|345778|metaxin 3##BX538064|MTX3|345778|metaxin 3##BC150295|MTX3|345778|metaxin 3##AK296864|MTX3|345778|metaxin 3##BX647596|MTX3|345778|metaxin 3##NM_001010891|MTX3|345778|metaxin 3##NM_001167741|MTX3|345778|metaxin 3##NM_032567|SPZ1|84654|spermatogenic leucine zipper 1##AK098575|SPZ1|84654|spermatogenic leucine zipper 1##AK314007|SPZ1|84654|spermatogenic leucine zipper 1##AF333098|SPZ1|84654|spermatogenic leucine zipper 1##BC033798|SPZ1|84654|spermatogenic leucine zipper 1##NM_001105251|ZFYVE16|9765|zinc finger, FYVE domain containing 16##NM_014733|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC032227|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BX537424|ZFYVE16|9765|zinc finger, FYVE domain containing 16##CR933621|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AB002303|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC030808|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AY358256|FAM151B|167555|family with sequence similarity 151, member B##NM_205548|FAM151B|167555|family with sequence similarity 151, member B##BC142990|FAM151B|167555|family with sequence similarity 151, member B##BC131563|FAM151B|167555|family with sequence similarity 151, member B	1.252585	0.986522	CTCF.p2:-3:0.987	denovo_WM_7:-51:0.247	denovo_WM_7:-66:0.375
chr19	12904103	12904235	reg1001817.p1	10.056	+	AK222532 TSC_hg19_v1_chr19_+_12902299 AK313737 BC110372 BC004250 BC009465 BC009466 NM_002229 X51345	-1856	+	TSC_hg19_v1_chr19_+_12902286 DQ650707	-1879	+	TSC_hg19_v1_chr19_-_12886422 NM_001100176 NM_013312	-17742	-	BC000452 BC003022 BC064138 TSC_hg19_v1_chr19_-_12912615 Z22548 AK289485 AK293957 BC039428 AK022395 NM_005809 NM_181738	8495	-	TSC_hg19_v1_chr19_+_12917397 AK315327	13228	+	TSC_hg19_v1_chr19_+_12917432 NM_006397 BC011748 AY363912 Z97029 CR456841	13279	+	AK222532|JUNB|3726|jun B proto-oncogene##AK313737|JUNB|3726|jun B proto-oncogene##BC004250|JUNB|3726|jun B proto-oncogene##BC009465|JUNB|3726|jun B proto-oncogene##BC009466|JUNB|3726|jun B proto-oncogene##NM_002229|JUNB|3726|jun B proto-oncogene##X51345|JUNB|3726|jun B proto-oncogene##NM_001100176|HOOK2|29911|hook homolog 2 (Drosophila)##NM_013312|HOOK2|29911|hook homolog 2 (Drosophila)##BC000452|PRDX2|7001|peroxiredoxin 2##BC003022|PRDX2|7001|peroxiredoxin 2##BC064138|PRDX2|7001|peroxiredoxin 2##Z22548|PRDX2|7001|peroxiredoxin 2##AK289485|PRDX2|7001|peroxiredoxin 2##AK293957|PRDX2|7001|peroxiredoxin 2##BC039428|PRDX2|7001|peroxiredoxin 2##AK022395|PRDX2|7001|peroxiredoxin 2##NM_005809|PRDX2|7001|peroxiredoxin 2##NM_181738|PRDX2|7001|peroxiredoxin 2##AK315327|RNASEH2A|10535|ribonuclease H2, subunit A##NM_006397|RNASEH2A|10535|ribonuclease H2, subunit A##BC011748|RNASEH2A|10535|ribonuclease H2, subunit A##AY363912|RNASEH2A|10535|ribonuclease H2, subunit A##Z97029|RNASEH2A|10535|ribonuclease H2, subunit A##CR456841|RNASEH2A|10535|ribonuclease H2, subunit A	0.253812	0.0	
chr10	112624418	112624598	reg1001840.p1	10.054	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-220379	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-280393	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-297016	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	7104	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	7206	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	54188	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	0.934737	0.0	denovo_WM_7:-31:0.613
chr21	45341584	45341758	reg1002170.p1	10.052	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-56548	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-56611	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-132186	+	AK300562 NM_001037553	3607	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	90669	+	TSC_hg19_v1_chr21_+_45527202 AK314184	185531	+	NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.211241	0.0	
chrX	52988066	52988246	reg1001604.p1	10.052	+	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	-494	-	AL834135 NM_001099684	-2528	-	AL834135 NM_001099684	-59748	+	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	36490	-	BC009861 NM_018969	90349	+	TSC_hg19_v1_chrX_+_53111548 NM_022117 AK131220 AK292462 AY040871 AF273046 BC024270 AL713652 AB463325 AM392716 AF254794	123486	+	AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A##BC009861|GPR173|54328|G protein-coupled receptor 173##NM_018969|GPR173|54328|G protein-coupled receptor 173##NM_022117|TSPYL2|64061|TSPY-like 2##AK131220|TSPYL2|64061|TSPY-like 2##AK292462|TSPYL2|64061|TSPY-like 2##AY040871|TSPYL2|64061|TSPY-like 2##AF273046|TSPYL2|64061|TSPY-like 2##BC024270|TSPYL2|64061|TSPY-like 2##AL713652|TSPYL2|64061|TSPY-like 2##AM392716|TSPYL2|64061|TSPY-like 2##AF254794|TSPYL2|64061|TSPY-like 2	0.99747	0.0	
chr1	204450294	204450439	reg1001923.p2	10.050	+	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	-69426	-	TSC_hg19_v1_chr1_+_204380508 BC009873	-69845	+	AB023186 BC152475 NM_014935 TSC_hg19_v1_chr1_-_204329058	-121316	-	BC132876 BC136645 BC144342 NM_002646 AK308153	9132	-	TSC_hg19_v1_chr1_-_204463934 BC094741	13399	-	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	35136	+	BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AB023186|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC152475|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##NM_014935|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC132876|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC136645|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC144342|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_002646|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AK308153|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)	0.990325	0.0	denovo_WM_7:38:0.237	denovo_WM_7:39:0.237	denovo_WM_7:40:0.237	denovo_WM_7:41:0.237
chr1	36401788	36401941	reg1001807.p1	10.047	+	TSC_hg19_v1_chr1_+_36396730 BC066888 NM_024852 NM_177422 AK292870 BC025769 AK022827	-5064	+	TSC_hg19_v1_chr1_+_36396318 AK027796	-5540	+	TSC_hg19_v1_chr1_+_36387789 AK000326	-14005	+	AF054910 NM_014466 TSC_hg19_v1_chr1_+_36549694	147822	+	TSC_hg19_v1_chr1_+_36549714 BC035620 AK313610	147859	+	NM_017825 AF212236 TSC_hg19_v1_chr1_+_36554492 AJ427295 AK000453 AK295283 BC014169 AK316349 AK223037 CR457237	152614	+	BC066888|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##NM_024852|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##NM_177422|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##AK292870|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##BC025769|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##AK022827|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##AK027796|EIF2C3|192669|eukaryotic translation initiation factor 2C, 3##AK000326|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##AF054910|TEKT2|27285|tektin 2 (testicular)##NM_014466|TEKT2|27285|tektin 2 (testicular)##BC035620|TEKT2|27285|tektin 2 (testicular)##AK313610|TEKT2|27285|tektin 2 (testicular)##NM_017825|ADPRHL2|54936|ADP-ribosylhydrolase like 2##AF212236|ADPRHL2|54936|ADP-ribosylhydrolase like 2##AJ427295|ADPRHL2|54936|ADP-ribosylhydrolase like 2##AK000453|ADPRHL2|54936|ADP-ribosylhydrolase like 2##AK295283|ADPRHL2|54936|ADP-ribosylhydrolase like 2##BC014169|ADPRHL2|54936|ADP-ribosylhydrolase like 2##AK316349|ADPRHL2|54936|ADP-ribosylhydrolase like 2##AK223037|ADPRHL2|54936|ADP-ribosylhydrolase like 2##CR457237|ADPRHL2|54936|ADP-ribosylhydrolase like 2	0.956128	0.0	denovo_WM_7:0:0.778
chr9	98272924	98273055	reg1002025.p3	10.046	+	NM_000264 TSC_hg19_v1_chr9_-_98270933	-2105	-	AB189438 AB189439 NM_001083604 NM_001083605	-2668	-	TSC_hg19_v1_chr9_-_98269686 NM_001083606 U43148	-3289	-	AB212827 AB212828 AB239329 TSC_hg19_v1_chr9_-_98279070	6015	-	AB189436 AB189437 NM_001083602 NM_001083603 BC043542	6303	-	TSC_hg19_v1_chr9_-_98637744 AF170307	364763	-	NM_000264|PTCH1|5727|patched 1##AB189438|PTCH1|5727|patched 1##AB189439|PTCH1|5727|patched 1##NM_001083604|PTCH1|5727|patched 1##NM_001083605|PTCH1|5727|patched 1##NM_001083606|PTCH1|5727|patched 1##U43148|PTCH1|5727|patched 1##AB212827|PTCH1|5727|patched 1##AB212828|PTCH1|5727|patched 1##AB239329|PTCH1|5727|patched 1##AB189436|PTCH1|5727|patched 1##AB189437|PTCH1|5727|patched 1##NM_001083602|PTCH1|5727|patched 1##NM_001083603|PTCH1|5727|patched 1##BC043542|PTCH1|5727|patched 1##AF170307|LINC00476|100128782|long intergenic non-protein coding RNA 476	1.924983	0.0	denovo_WM_7:31:0.618	denovo_WM_7:34:0.270
chr3	52926975	52927155	reg1002039.p2	10.044	+	NM_205853	-57831	-	AK298407 AK298412 AK298429 D38595 BC136392 BC136393 TSC_hg19_v1_chr3_-_52864689 AK303769 NM_001166449 NM_002218	-62364	-	NM_002217 TSC_hg19_v1_chr3_+_52828811 X67055 AK222757 AK298450 BC107604 BC107605 BC107814	-98266	+	TSC_hg19_v1_chr3_-_52931547 AY726591 BC047015	4384	-	TSC_hg19_v1_chr3_-_52931595 NM_001198974 NM_198563	4592	-	TSC_hg19_v1_chr3_-_53079286 NM_001005159	152244	-	NM_205853|MUSTN1|389125|musculoskeletal, embryonic nuclear protein 1##AK298407|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK298412|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK298429|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##D38595|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##BC136392|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##BC136393|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK303769|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_001166449|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_002218|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_002217|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##X67055|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AK222757|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AK298450|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107604|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107605|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107814|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AY726591|TMEM110|375346|transmembrane protein 110##BC047015|TMEM110|375346|transmembrane protein 110##NM_001198974|TMEM110-MUSTN1|100526772|TMEM110-MUSTN1 readthrough##NM_198563|TMEM110|375346|transmembrane protein 110##NM_001005159|SFMBT1|51460|Scm-like with four mbt domains 1	0.996817	0.0	denovo_WM_7:4:0.275	denovo_WM_7:5:0.710
chr4	163959442	163959549	reg1002061.p1	10.044	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	-874344	-	AK294459 NM_014247	-3770498	+	AK058100 NM_152543	-4003163	-	TSC_hg19_v1_chr4_-_164088002 AK097352	128497	-	TSC_hg19_v1_chr4_-_164088043 AK308601	128542	-	TSC_hg19_v1_chr4_-_164088073 BC008207 NM_001128931 NM_138386	128583	-	AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##AK308601|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##BC008207|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##NM_001128931|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##NM_138386|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	1.992116	0.170387	denovo_WM_7:57:0.248	denovo_WM_7:58:0.213	denovo_WM_7:77:0.214	denovo_WM_7:78:0.249
chr4	185642571	185642677	reg1001951.p1	10.043	+	TSC_hg19_v1_chr4_+_185570923 BC064600 AK307317	-71695	+	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	-71791	+	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	-72023	-	DQ907910 DQ907911 TSC_hg19_v1_chr4_-_185655244 BC067802 AK292297 BC141854 AF469667 BC131556 NM_024629	12629	-	TSC_hg19_v1_chr4_-_185726866 AK296826	84279	-	TSC_hg19_v1_chr4_-_185747123 L09229 AK292798	104477	-	BC064600|CCDC111|201973|coiled-coil domain containing 111##AK307317|CCDC111|201973|coiled-coil domain containing 111##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##DQ907910|MLF1IP|79682|MLF1 interacting protein##DQ907911|MLF1IP|79682|MLF1 interacting protein##BC067802|MLF1IP|79682|MLF1 interacting protein##AK292297|MLF1IP|79682|MLF1 interacting protein##BC141854|MLF1IP|79682|MLF1 interacting protein##AF469667|MLF1IP|79682|MLF1 interacting protein##BC131556|MLF1IP|79682|MLF1 interacting protein##NM_024629|MLF1IP|79682|MLF1 interacting protein##AK296826|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##L09229|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##AK292798|ACSL1|2180|acyl-CoA synthetase long-chain family member 1	0.999063	0.0	
chr4	184319352	184319499	reg1002579.p1	10.041	+	NM_001185149	-75847	-	NM_001111319	-77499	-	TSC_hg19_v1_chr4_+_184020431 NM_024949	-298947	+	TSC_hg19_v1_chr4_+_184365788 AK000043 NM_017632	46361	+	TSC_hg19_v1_chr4_+_184365846 AF246705 AK096180 BC022270 AK225848 EU446516 CU692522	46444	+	TSC_hg19_v1_chr4_-_184425612 BC038563	106213	-	NM_001185149|CLDN24|100132463|claudin 24##NM_001111319|CLDN22|53842|claudin 22##NM_024949|WWC2|80014|WW and C2 domain containing 2##AK000043|CDKN2AIP|55602|CDKN2A interacting protein##NM_017632|CDKN2AIP|55602|CDKN2A interacting protein##AF246705|CDKN2AIP|55602|CDKN2A interacting protein##AK096180|CDKN2AIP|55602|CDKN2A interacting protein##BC022270|CDKN2AIP|55602|CDKN2A interacting protein##AK225848|CDKN2AIP|55602|CDKN2A interacting protein##EU446516|CDKN2AIP|55602|CDKN2A interacting protein##BC038563|LOC389247|389247|uncharacterized LOC389247	1.002568	0.0	denovo_WM_7:-4:0.924
chr9	112178650	112178802	reg1001661.p1	10.040	+	TSC_hg19_v1_chr9_-_112083330 AB032179	-95436	-	TSC_hg19_v1_chr9_-_112083007 AF153416 AF153418 NM_018424 NM_019114	-95714	-	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	-249197	-	AK296265 AK296388 AK316118 NM_001145371 NM_001145372	12487	-	BX648253 NM_001145369 NM_001145370	34937	-	TSC_hg19_v1_chr9_-_112260588 BC063287 AK295875 AK304434 AK316066 NM_001145368 NM_002829	81863	-	AB032179|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153416|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153418|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_018424|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_019114|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4##AK296265|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK296388|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316118|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145371|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145372|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BX648253|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145369|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145370|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BC063287|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK295875|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK304434|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316066|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145368|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_002829|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	1.909972	0.0	denovo_WM_7:-8:0.212	denovo_WM_7:12:0.820
chrX	13109616	13109766	reg1001721.p1	10.040	+	BX647580 AK313776 AF494345 BX648111 BX648919 NM_174901	-46873	-	TSC_hg19_v1_chrX_+_12994293 BC104464 BC104465 BT007090 X02493	-115348	+	BC107789 NM_021109 M17733 AK055976 AK057827 AK311747 BC016732 BC022857 BC062436 BC070248 BC070249 BC083509 BC092437 BC104666 BC061586 BC151215 BC139925 BC101790 BC101792 BC001631 BC064954 BC128103 BC141975 BC141976 BC128102	-116451	+	AB050195 TSC_hg19_v1_chrX_-_13338140 BC137186 BC137187	228447	-	AK302365 NM_001135995	228826	-	TSC_hg19_v1_chrX_-_13397507 D28370	287814	-	BX647580|FAM9C|171484|family with sequence similarity 9, member C##AK313776|FAM9C|171484|family with sequence similarity 9, member C##AF494345|FAM9C|171484|family with sequence similarity 9, member C##BX648111|FAM9C|171484|family with sequence similarity 9, member C##BX648919|FAM9C|171484|family with sequence similarity 9, member C##NM_174901|FAM9C|171484|family with sequence similarity 9, member C##BC104464|TMSB4X|7114|thymosin beta 4, X-linked##BC104465|TMSB4X|7114|thymosin beta 4, X-linked##BT007090|TMSB4X|7114|thymosin beta 4, X-linked##X02493|TMSB4X|7114|thymosin beta 4, X-linked##BC107789|TMSB4X|7114|thymosin beta 4, X-linked##NM_021109|TMSB4X|7114|thymosin beta 4, X-linked##M17733|TMSB4X|7114|thymosin beta 4, X-linked##AK055976|TMSB4X|7114|thymosin beta 4, X-linked##AK057827|TMSB4X|7114|thymosin beta 4, X-linked##AK311747|TMSB4X|7114|thymosin beta 4, X-linked##BC016732|TMSB4X|7114|thymosin beta 4, X-linked##BC022857|TMSB4X|7114|thymosin beta 4, X-linked##BC062436|TMSB4X|7114|thymosin beta 4, X-linked##BC070248|TMSB4X|7114|thymosin beta 4, X-linked##BC070249|TMSB4X|7114|thymosin beta 4, X-linked##BC083509|TMSB4X|7114|thymosin beta 4, X-linked##BC092437|TMSB4X|7114|thymosin beta 4, X-linked##BC104666|TMSB4X|7114|thymosin beta 4, X-linked##BC061586|TMSB4X|7114|thymosin beta 4, X-linked##BC151215|TMSB4X|7114|thymosin beta 4, X-linked##BC139925|TMSB4X|7114|thymosin beta 4, X-linked##BC101790|TMSB4X|7114|thymosin beta 4, X-linked##BC101792|TMSB4X|7114|thymosin beta 4, X-linked##BC001631|TMSB4X|7114|thymosin beta 4, X-linked##BC064954|TMSB4X|7114|thymosin beta 4, X-linked##BC128103|TMSB4X|7114|thymosin beta 4, X-linked##BC141975|TMSB4X|7114|thymosin beta 4, X-linked##BC141976|TMSB4X|7114|thymosin beta 4, X-linked##BC128102|TMSB4X|7114|thymosin beta 4, X-linked##AB050195|ATXN3L|92552|ataxin 3-like##BC137186|ATXN3L|92552|ataxin 3-like##BC137187|ATXN3L|92552|ataxin 3-like##AK302365|ATXN3L|92552|ataxin 3-like##NM_001135995|ATXN3L|92552|ataxin 3-like	0.999264	0.0	denovo_WM_7:-6:0.425	denovo_WM_7:-7:0.425
chr16	53568899	53569079	reg1001985.p2	10.039	+	TSC_hg19_v1_chr16_-_53537122 AK303503 BC001134 BC095401 AK222743 AK023320 NM_001012398 NM_022476	-31849	-	TSC_hg19_v1_chr16_+_53479685 BX537767	-89301	+	TSC_hg19_v1_chr16_+_53469560 AK300047	-99443	+	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	168768	-	NM_001080432	168885	+	TSC_hg19_v1_chr16_+_53738067 AK096554 AB051539 AK295196	169079	+	AK303503|AKTIP|64400|AKT interacting protein##BC001134|AKTIP|64400|AKT interacting protein##BC095401|AKTIP|64400|AKT interacting protein##AK222743|AKTIP|64400|AKT interacting protein##AK023320|AKTIP|64400|AKT interacting protein##NM_001012398|AKTIP|64400|AKT interacting protein##NM_022476|AKTIP|64400|AKT interacting protein##BX537767|RBL2|5934|retinoblastoma-like 2 (p130)##AK300047|RBL2|5934|retinoblastoma-like 2 (p130)##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##NM_001080432|FTO|79068|fat mass and obesity associated##AK096554|FTO|79068|fat mass and obesity associated##AB051539|FTO|79068|fat mass and obesity associated##AK295196|FTO|79068|fat mass and obesity associated	0.99503	0.0	
chr2	197104964	197105118	reg1001864.p1	10.035	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-68723	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-68762	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-171546	-	BC117194 BC117198 AB037722 NM_020760	352251	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	399316	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	559372	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.895456	0.0	denovo_WM_7:-11:0.476	denovo_WM_7:-12:0.420
chr14	94858976	94859116	reg1002043.p2	10.034	+	TSC_hg19_v1_chr14_-_94856973 BX161449 BX247968 AK315637 X05826 X05827 NM_001002235 NM_001002236 NM_001127700 NM_001127701 NM_001127702 NM_001127703 NM_001127704 NM_001127705 NM_001127706 NM_001127707	-2055	-	TSC_hg19_v1_chr14_-_94855154 BC011991 NM_000295	-3905	-	K01396 X01683 BC015642 BX248257 TSC_hg19_v1_chr14_-_94854940 AK026174 BC070163	-4099	-	BC146962 BX248259 NM_001080451	60057	-	AY358700 AY220120 AY220119 AK301082 BC111498 AY220121 AY220118 AY185496 AY185497 NM_001042518 NM_175739	83545	-	BC040857 NM_173850	125134	-	BX161449|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##BX247968|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##AK315637|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##X05826|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##X05827|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001002235|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001002236|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127700|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127701|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127702|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127703|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127704|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127705|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127706|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_001127707|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##BC011991|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##NM_000295|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##K01396|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##X01683|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##BC015642|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##BX248257|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##AK026174|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##BC070163|SERPINA1|5265|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1##BC146962|SERPINA11|256394|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11##BX248259|SERPINA11|256394|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11##NM_001080451|SERPINA11|256394|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11##AY358700|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AY220120|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AY220119|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AK301082|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##BC111498|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AY220121|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AY220118|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AY185496|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##AY185497|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##NM_001042518|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##NM_175739|SERPINA9|327657|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9##BC040857|SERPINA12|145264|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12##NM_173850|SERPINA12|145264|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	0.997753	0.0	denovo_WM_7:41:0.310	denovo_WM_7:42:0.310	denovo_WM_7:43:0.310
chr20	49104846	49104973	reg1001690.p2	10.033	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-297279	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-297528	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-297716	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	21967	+	TSC_hg19_v1_chr20_+_49126916 AK316563	22004	+	AK299830 TSC_hg19_v1_chr20_+_49126919	22010	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	1.988313	0.0	denovo_WM_7:-10:0.964	denovo_WM_7:-34:0.493	denovo_WM_7:-35:0.493
chr1	36245473	36245578	reg1002166.p2	10.030	+	TSC_hg19_v1_chr1_-_36235569 BC113116 BC115023 BC115024 BC115025 BC115026 BC115027 BC137279 BC140789 AF297866 NM_001190481 NM_022111 BC038991 BC018670 BC062215 AK308193	-10010	-	TSC_hg19_v1_chr1_-_36184816 AK096303 NM_152374	-60734	-	TSC_hg19_v1_chr1_-_36184424 BC026909 AK294352	-61113	-	TSC_hg19_v1_chr1_+_36273802 AB046787 BC152450 NM_017629	28295	+	TSC_hg19_v1_chr1_+_36348795 AF093097 NM_012199	103278	+	TSC_hg19_v1_chr1_+_36348815 BC063275	103289	+	BC113116|CLSPN|63967|claspin##BC115023|CLSPN|63967|claspin##BC115024|CLSPN|63967|claspin##BC115025|CLSPN|63967|claspin##BC115026|CLSPN|63967|claspin##BC115027|CLSPN|63967|claspin##BC137279|CLSPN|63967|claspin##BC140789|CLSPN|63967|claspin##AF297866|CLSPN|63967|claspin##NM_001190481|CLSPN|63967|claspin##NM_022111|CLSPN|63967|claspin##BC038991|CLSPN|63967|claspin##BC018670|CLSPN|63967|claspin##BC062215|CLSPN|63967|claspin##AK308193|CLSPN|63967|claspin##AK096303|C1orf216|127703|chromosome 1 open reading frame 216##NM_152374|C1orf216|127703|chromosome 1 open reading frame 216##BC026909|C1orf216|127703|chromosome 1 open reading frame 216##AK294352|C1orf216|127703|chromosome 1 open reading frame 216##AB046787|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##BC152450|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##NM_017629|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##AF093097|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##NM_012199|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##BC063275|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1	0.997357	0.0	denovo_WM_7:38:0.493	denovo_WM_7:39:0.493
chr2	10518288	10518447	reg1001937.p1	10.030	+	AK000596 NM_134421	-74542	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-75318	+	BC093999 BC094001 NM_182626	-236388	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	69993	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	70085	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	311677	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	0.993308	0.0	
chrX	22154116	22154282	reg1002159.p1	10.030	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	-103174	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-195373	+	AK091850 NM_206923	-280095	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	136869	+	AY039237 NM_182699 BC067878 BC051703	863885	+	AK298796 NM_173495 AK054858 BC121061	1198861	+	NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AK091850|YY2|404281|YY2 transcription factor##NM_206923|YY2|404281|YY2 transcription factor##GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##AK298796|PTCHD1|139411|patched domain containing 1##NM_173495|PTCHD1|139411|patched domain containing 1##AK054858|PTCHD1|139411|patched domain containing 1##BC121061|PTCHD1|139411|patched domain containing 1	1.86585	0.056346	denovo_WM_7:-35:0.477	denovo_WM_7:-36:0.477	denovo_WM_7:100:0.222	denovo_WM_7:101:0.614
chr22	42579697	42579824	reg1002064.p2	10.028	+	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-52879	-	AB463001 CU013213 CU013501 M20403 X08006 BC066877 BC067432 TSC_hg19_v1_chr22_-_42526809 BC106757 BC106758 BC126858 CR456430 BC075023 BC075024	-52953	-	TSC_hg19_v1_chr22_+_42486980 AK123630 BC039542	-92734	+	AB527391 NM_005650 NM_181492	31617	-	BC038245 TSC_hg19_v1_chr22_-_42765218	185442	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	248621	-	AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013213|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013501|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##M20403|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##X08006|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC066877|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC067432|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106757|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106758|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC126858|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CR456430|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075023|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075024|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK123630|LOC100132273|100132273|uncharacterized LOC100132273##BC039542|LOC100132273|100132273|uncharacterized LOC100132273##NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1	0.995949	0.0	denovo_WM_7:29:0.815
chr16	87900438	87900599	reg1002312.p3	10.026	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-100948	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-101003	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-263808	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	2557	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	69629	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	84650	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.866767	0.0	denovo_WM_7:31:0.258	denovo_WM_7:33:0.535
chr1	40707556	40707679	reg1002014.p2	10.023	+	TSC_hg19_v1_chr1_+_40627068 HQ258544	-80541	+	TSC_hg19_v1_chr1_+_40627058 AK307662 U22377 X58480	-80560	+	TSC_hg19_v1_chr1_+_40627044 BC113666 NM_012421	-80578	+	NM_001008740 BC108666	5988	+	BC012000 TSC_hg19_v1_chr1_-_40723621 AK054902	15998	-	TSC_hg19_v1_chr1_+_40723742 NM_005857 AB016068 BC037283	16159	+	HQ258544|RLF|6018|rearranged L-myc fusion##AK307662|RLF|6018|rearranged L-myc fusion##U22377|RLF|6018|rearranged L-myc fusion##BC113666|RLF|6018|rearranged L-myc fusion##NM_012421|RLF|6018|rearranged L-myc fusion##NM_001008740|TMCO2|127391|transmembrane and coiled-coil domains 2##BC108666|TMCO2|127391|transmembrane and coiled-coil domains 2##NM_005857|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##AB016068|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##BC037283|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)	0.999315	0.0	denovo_WM_7:29:0.227	denovo_WM_7:30:0.740
chr16	18778635	18778777	reg1001867.p2	10.023	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	-205315	-	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-1213901	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-2452176	+	TSC_hg19_v1_chr16_-_18798077 AK127316	19390	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	22949	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	34076	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1	0.0	0.0	
chr15	101728696	101728876	reg1002044.p2	10.021	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-269274	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-269312	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-308715	+	AB071402 TSC_hg19_v1_chr15_-_101791795	62950	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	63349	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	88877	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.94623	0.0	denovo_WM_7:21:0.231	denovo_WM_7:22:0.267	denovo_WM_7:23:0.404
chr5	132441639	132441819	reg1000980.p1	10.021	+	TSC_hg19_v1_chr5_+_132432890 AK315862	-8838	+	TSC_hg19_v1_chr5_+_132428397 AK315887 AK311316	-13326	+	TSC_hg19_v1_chr5_+_132406081 AK295847 AK311471	-35626	+	TSC_hg19_v1_chr5_-_132948202 AK055684	506470	-	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	506509	-	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	862646	-	AK315862|HSPA4|3308|heat shock 70kDa protein 4##AK315887|HSPA4|3308|heat shock 70kDa protein 4##AK311316|HSPA4|3308|heat shock 70kDa protein 4##AK295847|HSPA4|3308|heat shock 70kDa protein 4##AK311471|HSPA4|3308|heat shock 70kDa protein 4##AK055684|FSTL4|23105|follistatin-like 4##NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15	2.98359	0.0	denovo_WM_7:59:0.883	denovo_WM_7:74:0.215
chr13	22688718	22688882	reg1002188.p1	10.015	+	TSC_hg19_v1_chr13_+_22245083 AK290792 NM_002010	-443652	+	TSC_hg19_v1_chr13_-_22178356 NM_152726	-510440	-	TSC_hg19_v1_chr13_-_22178300 CU689110 CU690000 AK091907 AX747248 BC031089 BC034965	-510491	-	NM_000231 U34976 BC109321 AK290620 AK316579 BC074777 BC074778	1066315	+	TSC_hg19_v1_chr13_-_23949652 AK125458	1260850	-	TSC_hg19_v1_chr13_-_24007842 NM_014363	1319040	-	AK290792|FGF9|2254|fibroblast growth factor 9 (glia-activating factor)##NM_002010|FGF9|2254|fibroblast growth factor 9 (glia-activating factor)##NM_152726|EFHA1|221154|EF-hand domain family, member A1##AK091907|EFHA1|221154|EF-hand domain family, member A1##BC031089|EFHA1|221154|EF-hand domain family, member A1##BC034965|EFHA1|221154|EF-hand domain family, member A1##NM_000231|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##U34976|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC109321|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK290620|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK316579|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074777|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074778|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK125458|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)	0.985598	0.0	
chr13	27721818	27721989	reg1001712.p1	10.014	+	AK312602 AK294378 AK311107 AK307756 AK290220 NM_005288 TSC_hg19_v1_chr13_-_27334929	-387050	-	TSC_hg19_v1_chr13_+_27131892 AF454702	-590001	+	TSC_hg19_v1_chr13_+_27131854 AK289845 BC050283 NM_006646	-590069	+	DQ894074 AF022789 TSC_hg19_v1_chr13_-_27745948 AK289685	23958	-	TSC_hg19_v1_chr13_-_27746003 BC026072 NM_182488	24183	-	TSC_hg19_v1_chr13_+_27825693 D28406 NM_000982 AK130968 AK311795 BC070185 BC070323 BC070330 BC104667 BX647669 AY320407 U25789 BC104478 L25348 U14967 BC070184 BC001603	103839	+	AK312602|GPR12|2835|G protein-coupled receptor 12##AK294378|GPR12|2835|G protein-coupled receptor 12##AK311107|GPR12|2835|G protein-coupled receptor 12##AK307756|GPR12|2835|G protein-coupled receptor 12##AK290220|GPR12|2835|G protein-coupled receptor 12##NM_005288|GPR12|2835|G protein-coupled receptor 12##AF454702|WASF3|10810|WAS protein family, member 3##AK289845|WASF3|10810|WAS protein family, member 3##BC050283|WASF3|10810|WAS protein family, member 3##NM_006646|WASF3|10810|WAS protein family, member 3##DQ894074|USP12|219333|ubiquitin specific peptidase 12##AF022789|USP12|219333|ubiquitin specific peptidase 12##AK289685|USP12|219333|ubiquitin specific peptidase 12##BC026072|USP12|219333|ubiquitin specific peptidase 12##NM_182488|USP12|219333|ubiquitin specific peptidase 12##D28406|RPL21|6144|ribosomal protein L21##NM_000982|RPL21|6144|ribosomal protein L21##AK130968|RPL21|6144|ribosomal protein L21##AK311795|RPL21|6144|ribosomal protein L21##BC070185|RPL21|6144|ribosomal protein L21##BC070323|RPL21|6144|ribosomal protein L21##BC070330|RPL21|6144|ribosomal protein L21##BC104667|RPL21|6144|ribosomal protein L21##BX647669|RPL21|6144|ribosomal protein L21##U25789|RPL21|6144|ribosomal protein L21##BC104478|RPL21|6144|ribosomal protein L21##U14967|RPL21|6144|ribosomal protein L21##BC070184|RPL21|6144|ribosomal protein L21##BC001603|RPL21|6144|ribosomal protein L21	0.785552	0.0	denovo_WM_7:-1:0.677
chr6	37521609	37521726	reg1001999.p1	10.013	+	TSC_hg19_v1_chr6_-_37467691 BC104835 AF161383 NM_138493	-53971	-	TSC_hg19_v1_chr6_-_37467667 BC003515 BC108655	-54015	-	AB385274 TSC_hg19_v1_chr6_+_37403469	-118230	+	TSC_hg19_v1_chr6_-_37665660 AF478693 NM_153487	144039	-	TSC_hg19_v1_chr6_+_37787274 NM_021943	265623	+	TSC_hg19_v1_chr6_+_37787655 AK023284 BC031481 DQ891133 DQ894312	266023	+	BC104835|CCDC167|154467|coiled-coil domain containing 167##AF161383|CCDC167|154467|coiled-coil domain containing 167##NM_138493|CCDC167|154467|coiled-coil domain containing 167##BC003515|CCDC167|154467|coiled-coil domain containing 167##BC108655|CCDC167|154467|coiled-coil domain containing 167##AF478693|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_153487|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_021943|ZFAND3|60685|zinc finger, AN1-type domain 3##AK023284|ZFAND3|60685|zinc finger, AN1-type domain 3##BC031481|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ891133|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ894312|ZFAND3|60685|zinc finger, AN1-type domain 3	0.991913	0.0	denovo_WM_7:64:0.323	denovo_WM_7:65:0.323	denovo_WM_7:66:0.323
chr9	82239035	82239215	reg1001748.p1	10.012	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-51440	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-51601	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-52239	+	BC010100 NM_005077	2064470	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2065302	-	NM_001145197 AK125847 AK308327	2304246	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	0.999378	0.0	denovo_WM_7:-22:0.307	denovo_WM_7:-23:0.307	denovo_WM_7:-24:0.307
chr9	20573061	20573219	reg1001553.p1	10.011	+	BC143889 BC069622 AF097366 AF177987 NM_001193288 NM_020344	-786189	-	AK123581 NM_001010887 TSC_hg19_v1_chr9_+_19409009 BC092487 AY312516	-1164137	+	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	-1192913	-	AK312914 BC030550 L13744 TSC_hg19_v1_chr9_-_20622460	49308	-	AK225957 TSC_hg19_v1_chr9_-_20622494 BC036089 NM_004529 BX649194	49356	-	AK056522 AY139834 NM_017794	85167	+	BC143889|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##BC069622|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AF097366|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AF177987|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##NM_001193288|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##NM_020344|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AK123581|ACER2|340485|alkaline ceramidase 2##NM_001010887|ACER2|340485|alkaline ceramidase 2##BC092487|ACER2|340485|alkaline ceramidase 2##AY312516|ACER2|340485|alkaline ceramidase 2##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6##AK312914|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC030550|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##L13744|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##AK225957|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC036089|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##NM_004529|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BX649194|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##AK056522|KIAA1797|54914|KIAA1797##AY139834|KIAA1797|54914|KIAA1797##NM_017794|KIAA1797|54914|KIAA1797	2.943413	0.0	denovo_WM_7:-10:0.939	denovo_WM_7:34:0.592	denovo_WM_7:52:0.855
chr18	6004854	6005031	reg1001789.p1	10.008	+	NM_001080209	-112840	-	TSC_hg19_v1_chr18_-_5630663 BC008377	-374295	-	AF069072 AB023204 NM_012307 TSC_hg19_v1_chr18_-_5543997 AK128531	-460954	-	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	409973	-	NM_001243517	506472	+	NM_001010000 BX648684 AK308259 AK302026	829523	+	NM_001080209|TMEM200C|645369|transmembrane protein 200C##BC008377|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AF069072|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AB023204|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##NM_012307|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AK128531|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28	1.997611	0.082962	denovo_WM_7:61:0.844
chr19	50094264	50094371	reg1001666.p1	10.006	+	NM_000951 BC026032	-9710	+	AF132959 TSC_hg19_v1_chr19_-_50083814	-10503	-	BC047314 TSC_hg19_v1_chr19_-_50083811 BC009299 BC010077 NM_015953 AK092444 AX747549 AK291535 AK300720	-10516	-	NM_020719	594	+	TSC_hg19_v1_chr19_-_50143401 AF493920 BT006805 CR541944 CR541967 AB528722 DQ890730 DQ892428 DQ895642 BC016286 BC016318 NM_006270	49060	-	TSC_hg19_v1_chr19_+_50145476 AK024444 NM_021228 BC011662	51113	+	NM_000951|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##BC026032|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##AF132959|NOSIP|51070|nitric oxide synthase interacting protein##BC047314|NOSIP|51070|nitric oxide synthase interacting protein##BC009299|NOSIP|51070|nitric oxide synthase interacting protein##BC010077|NOSIP|51070|nitric oxide synthase interacting protein##NM_015953|NOSIP|51070|nitric oxide synthase interacting protein##AK092444|NOSIP|51070|nitric oxide synthase interacting protein##AK291535|NOSIP|51070|nitric oxide synthase interacting protein##AK300720|NOSIP|51070|nitric oxide synthase interacting protein##NM_020719|PRR12|57479|proline rich 12##AF493920|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BT006805|RRAS|6237|related RAS viral (r-ras) oncogene homolog##CR541944|RRAS|6237|related RAS viral (r-ras) oncogene homolog##CR541967|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ890730|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ892428|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ895642|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BC016286|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BC016318|RRAS|6237|related RAS viral (r-ras) oncogene homolog##NM_006270|RRAS|6237|related RAS viral (r-ras) oncogene homolog##AK024444|SCAF1|58506|SR-related CTD-associated factor 1##NM_021228|SCAF1|58506|SR-related CTD-associated factor 1##BC011662|SCAF1|58506|SR-related CTD-associated factor 1	0.998203	0.0	
chr9	131938384	131938564	reg1001851.p2	10.004	+	AK310328 TSC_hg19_v1_chr9_+_131902359	-36164	+	TSC_hg19_v1_chr9_+_131901694 AK293296	-36755	+	TSC_hg19_v1_chr9_+_131873871 AK297202 AB464103 BT020119 CU678032 DQ892154 DQ894879 DQ895349 AK307424 NM_001193397	-64615	+	TSC_hg19_v1_chr9_-_131940534 BC064028	2033	-	TSC_hg19_v1_chr9_-_131940541 NM_203434	2066	-	AK092588 AX747616 NM_001012715 BC132699 BC132701	144821	+	AK310328|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK297202|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##BT020119|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##DQ892154|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##DQ894879|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##DQ895349|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK307424|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##NM_001193397|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##BC064028|IER5L|389792|immediate early response 5-like##NM_203434|IER5L|389792|immediate early response 5-like##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106	0.988697	0.0	denovo_WM_7:15:0.869
chr12	104680302	104680449	reg1002247.p1	9.999	+	TSC_hg19_v1_chr12_+_104659047 D28393	-21327	+	TSC_hg19_v1_chr12_+_104609556 NM_001093771 AK304241 AY057105	-70835	+	TSC_hg19_v1_chr12_-_104531875 X59710 BC007035 AK291934 BC005316 BC005317 AK311706 NM_006166	-148418	-	TSC_hg19_v1_chr12_+_104680799 NM_003330 NM_182729 NM_182742 NM_182743 AK226071 AY344087 AK308881 AY344090 AY344091 AY344076 AY344075 AY344073 AY344074 AY344072 AY344081 AY344082 AY344097 AK293322 AK312262 AK296495 AY344088 AY344089 AY344674 AY344077 AY344092 AY344084 AY344086 AY344673 S79851 X91247 AY344085 AY344080 BC018122 AY344093 AY344669 AY344071 AY344676 AY344070 AY344675	439	+	TSC_hg19_v1_chr12_+_104680950 AY344078	586	+	D88687 TSC_hg19_v1_chr12_+_104681047 AK295067	711	+	D28393|RPL18A|6142|ribosomal protein L18a##NM_001093771|TXNRD1|7296|thioredoxin reductase 1##AK304241|TXNRD1|7296|thioredoxin reductase 1##AY057105|TXNRD1|7296|thioredoxin reductase 1##X59710|NFYB|4801|nuclear transcription factor Y, beta##BC007035|NFYB|4801|nuclear transcription factor Y, beta##AK291934|NFYB|4801|nuclear transcription factor Y, beta##BC005316|NFYB|4801|nuclear transcription factor Y, beta##BC005317|NFYB|4801|nuclear transcription factor Y, beta##AK311706|NFYB|4801|nuclear transcription factor Y, beta##NM_006166|NFYB|4801|nuclear transcription factor Y, beta##NM_003330|TXNRD1|7296|thioredoxin reductase 1##NM_182729|TXNRD1|7296|thioredoxin reductase 1##NM_182742|TXNRD1|7296|thioredoxin reductase 1##NM_182743|TXNRD1|7296|thioredoxin reductase 1##AK226071|TXNRD1|7296|thioredoxin reductase 1##AY344087|TXNRD1|7296|thioredoxin reductase 1##AK308881|TXNRD1|7296|thioredoxin reductase 1##AY344074|TXNRD1|7296|thioredoxin reductase 1##AY344081|TXNRD1|7296|thioredoxin reductase 1##AK293322|TXNRD1|7296|thioredoxin reductase 1##AK312262|TXNRD1|7296|thioredoxin reductase 1##AK296495|TXNRD1|7296|thioredoxin reductase 1##AY344089|TXNRD1|7296|thioredoxin reductase 1##AY344077|TXNRD1|7296|thioredoxin reductase 1##AY344092|TXNRD1|7296|thioredoxin reductase 1##AY344084|TXNRD1|7296|thioredoxin reductase 1##AY344086|TXNRD1|7296|thioredoxin reductase 1##AY344673|TXNRD1|7296|thioredoxin reductase 1##S79851|TXNRD1|7296|thioredoxin reductase 1##X91247|TXNRD1|7296|thioredoxin reductase 1##BC018122|TXNRD1|7296|thioredoxin reductase 1##AY344093|TXNRD1|7296|thioredoxin reductase 1##AY344675|TXNRD1|7296|thioredoxin reductase 1##D88687|TXNRD1|7296|thioredoxin reductase 1##AK295067|TXNRD1|7296|thioredoxin reductase 1	0.994074	0.0	denovo_WM_7:-1:0.459	denovo_WM_7:-2:0.459
chr4	113239862	113239990	reg1002232.p1	9.996	+	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	-21399	+	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	-32925	-	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-86842	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	197406	-	TSC_hg19_v1_chr4_-_113558057 BC044799 BC028584 AK002193	318120	-	NM_016648	318193	+	NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2##BC044799|C4orf21|55345|chromosome 4 open reading frame 21##BC028584|C4orf21|55345|chromosome 4 open reading frame 21##AK002193|C4orf21|55345|chromosome 4 open reading frame 21##NM_016648|LARP7|51574|La ribonucleoprotein domain family, member 7	0.0	0.0	
chr5	89705590	89705770	reg1001732.p1	9.992	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	-141	-	AL833268 AL833274 NM_001131005 NM_001193347	-1505786	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1520416	+	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	64502	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	64898	-	NM_006467 AK295434 U93868	65022	+	BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)	0.0	0.0	
chr17	46956395	46956530	reg1002472.p1	9.991	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-48072	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-62038	-	CU689652 BC033563 NM_173623 AK310321	-84817	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	13723	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	29283	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	29372	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	0.0	0.348124	CTCF.p2:36:0.348
chr12	70654543	70654684	reg1002184.p1	9.990	+	AK307479 NM_001199303 AK095789	-17102	+	AK000662 TSC_hg19_v1_chr12_+_70637212 AF044215 BC011826 BC002597 AF161480	-17378	+	NM_014515 TSC_hg19_v1_chr12_+_70636809 AK315715 NM_001199302	-17822	+	TSC_hg19_v1_chr12_+_70760230 NM_014505 AF160967 BC042446 BC050621 AF215891 AF207992	105653	+	TSC_hg19_v1_chr12_+_70861858 BC031864	207255	+	BC101679 BC113463 BC143356 BC143360 NM_001206971 NM_001206972 NM_002837 X54131	349009	-	AK307479|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199303|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK095789|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK000662|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AF044215|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC011826|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC002597|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AF161480|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_014515|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK315715|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199302|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_014505|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF160967|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC042446|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC050621|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF215891|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF207992|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC101679|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC113463|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC143356|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC143360|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001206971|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001206972|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_002837|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##X54131|PTPRB|5787|protein tyrosine phosphatase, receptor type, B	0.993442	0.0	denovo_WM_7:27:0.799
chr15	37384752	37384932	reg1002112.p1	9.990	+	NM_032499	-452037	+	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	-512943	+	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	-1546456	-	CU674744 EU831754 EU831831 TSC_hg19_v1_chr15_-_37390403 AK294411 AK311546 AK056038 NM_172315	5624	-	AK056620 NM_172316 AB463111 CU690674 EU446635 EU831824 AK055936	6797	-	TSC_hg19_v1_chr15_-_37391935 AF178948 AF179896 AF179897 AF179898 AF179899	7077	-	NM_032499|C15orf41|84529|chromosome 15 open reading frame 41##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##EU831754|MEIS2|4212|Meis homeobox 2##EU831831|MEIS2|4212|Meis homeobox 2##AK294411|MEIS2|4212|Meis homeobox 2##AK311546|MEIS2|4212|Meis homeobox 2##AK056038|MEIS2|4212|Meis homeobox 2##NM_172315|MEIS2|4212|Meis homeobox 2##AK056620|MEIS2|4212|Meis homeobox 2##NM_172316|MEIS2|4212|Meis homeobox 2##EU446635|MEIS2|4212|Meis homeobox 2##EU831824|MEIS2|4212|Meis homeobox 2##AK055936|MEIS2|4212|Meis homeobox 2##AF178948|MEIS2|4212|Meis homeobox 2##AF179896|MEIS2|4212|Meis homeobox 2##AF179897|MEIS2|4212|Meis homeobox 2##AF179898|MEIS2|4212|Meis homeobox 2##AF179899|MEIS2|4212|Meis homeobox 2	2.996014	0.0	denovo_WM_7:63:0.302	denovo_WM_7:64:0.229	denovo_WM_7:98:0.230	denovo_WM_7:99:0.304
chr16	55292006	55292128	reg1002214.p1	9.987	+	AY335945 BC131510 NM_001252197 NM_005853	-326957	+	AF275804 TSC_hg19_v1_chr16_-_54962719	-329352	-	TSC_hg19_v1_chr16_-_54320368 AY335943 NM_024336	-971674	-	AY335937 NM_024335	66403	+	TSC_hg19_v1_chr16_+_55513109 NM_004530 X58968 AK312711 BC002576 DQ891952 DQ895138 AB385158 CU678050 J03210	221053	+	AK310314 NM_001127891	223403	+	AY335945|IRX5|10265|iroquois homeobox 5##BC131510|IRX5|10265|iroquois homeobox 5##NM_001252197|IRX5|10265|iroquois homeobox 5##NM_005853|IRX5|10265|iroquois homeobox 5##AF275804|CRNDE|643911|colorectal neoplasia differentially expressed (non-protein coding)##AY335943|IRX3|79191|iroquois homeobox 3##NM_024336|IRX3|79191|iroquois homeobox 3##AY335937|IRX6|79190|iroquois homeobox 6##NM_024335|IRX6|79190|iroquois homeobox 6##NM_004530|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##X58968|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK312711|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##BC002576|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ891952|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ895138|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##J03210|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK310314|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##NM_001127891|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	0.0	0.104409	
chr16	57294534	57294660	reg1002253.p1	9.986	+	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-15464	+	TSC_hg19_v1_chr16_+_57220244 AK172845 BC013173 NM_133368 AK027549 AB075852 AY358548	-74284	+	TSC_hg19_v1_chr16_-_57219952 NM_024946	-74634	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	23914	-	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	23982	-	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	98113	+	AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK172845|RSPRY1|89970|ring finger and SPRY domain containing 1##BC013173|RSPRY1|89970|ring finger and SPRY domain containing 1##NM_133368|RSPRY1|89970|ring finger and SPRY domain containing 1##AK027549|RSPRY1|89970|ring finger and SPRY domain containing 1##AB075852|RSPRY1|89970|ring finger and SPRY domain containing 1##AY358548|RSPRY1|89970|ring finger and SPRY domain containing 1##NM_024946|FAM192A|80011|family with sequence similarity 192, member A##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22	0.129451	0.0	
chr1	211752463	211752612	reg1002286.p2	9.985	+	TSC_hg19_v1_chr1_-_211752056 BC121015 BC121016 NM_021194	-449	-	AB451467 TSC_hg19_v1_chr1_-_211752048	-537	-	AF364518 TSC_hg19_v1_chr1_-_211751805	-775	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	96371	-	BC034621 TSC_hg19_v1_chr1_-_212003681	251211	-	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	251593	-	BC121015|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC121016|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##NM_021194|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AB451467|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AF364518|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1	0.0	0.0	
chr10	17785000	17785109	reg1002027.p1	9.982	+	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	-98824	+	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	-125681	-	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	-288689	-	NM_001098844 BC157856	9200	+	AK308132 AK308167 BC142642 J05550 NM_002438 X55635 BC146838 DQ663787	66349	+	NM_001098844 BC157856	256167	+	NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##BC142642|MRC1|4360|mannose receptor, C type 1##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236	0.990226	0.118174	denovo_WM_7:36:0.239	denovo_WM_7:37:0.239	denovo_WM_7:38:0.239	denovo_WM_7:39:0.239
chr12	111013371	111013508	reg1001702.p3	9.982	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-73364	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-73529	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-106770	+	TSC_hg19_v1_chr12_-_111020755 AY357944	7354	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	7631	-	AK124744 TSC_hg19_v1_chr12_-_111021124	7687	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	1.754116	0.0	denovo_WM_7:-4:0.289	denovo_WM_7:-5:0.347	denovo_WM_7:-6:0.237	denovo_WM_7:-19:0.298	denovo_WM_7:-20:0.304	denovo_WM_7:-21:0.269
chr12	120934490	120934625	reg1001963.p2	9.981	+	TSC_hg19_v1_chr12_+_120933916 BC100289 U32944 BC104244 BC104245	-623	+	TSC_hg19_v1_chr12_+_120933915 AK311790 AK309022	-644	+	TSC_hg19_v1_chr12_+_120933890 NM_001037495 NM_003746	-690	+	BC004916 AB590926 TSC_hg19_v1_chr12_-_120966955 BX647562 AK057777 AK222610 AK225242 BC107874 AK315681 EU700459 AK298214 NM_032314 AK293656	32404	-	TSC_hg19_v1_chr12_+_120972153 NM_014868 AK315558	37571	+	AK094011 AK097807 TSC_hg19_v1_chr12_+_120972158 AK126274 AK301608 AB027196 BC016622 BC031596 BC101709 BC101715 BC143493 BT006974 CU677651 D87451 DQ890634 DQ893805	37943	+	BC100289|DYNLL1|8655|dynein, light chain, LC8-type 1##U32944|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104244|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104245|DYNLL1|8655|dynein, light chain, LC8-type 1##AK311790|DYNLL1|8655|dynein, light chain, LC8-type 1##NM_001037495|DYNLL1|8655|dynein, light chain, LC8-type 1##NM_003746|DYNLL1|8655|dynein, light chain, LC8-type 1##BC004916|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BX647562|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK057777|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK222610|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK225242|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BC107874|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK315681|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##EU700459|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK298214|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##NM_032314|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK293656|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##NM_014868|RNF10|9921|ring finger protein 10##AK315558|RNF10|9921|ring finger protein 10##AK094011|RNF10|9921|ring finger protein 10##AK097807|RNF10|9921|ring finger protein 10##AK126274|RNF10|9921|ring finger protein 10##AK301608|RNF10|9921|ring finger protein 10##AB027196|RNF10|9921|ring finger protein 10##BC016622|RNF10|9921|ring finger protein 10##BC031596|RNF10|9921|ring finger protein 10##BC101709|RNF10|9921|ring finger protein 10##BC101715|RNF10|9921|ring finger protein 10##BC143493|RNF10|9921|ring finger protein 10##BT006974|RNF10|9921|ring finger protein 10##D87451|RNF10|9921|ring finger protein 10##DQ890634|RNF10|9921|ring finger protein 10##DQ893805|RNF10|9921|ring finger protein 10	0.997505	0.036826	
chr7	143916341	143916476	reg1002691.p1	9.981	+	BC136868 BC136878 EF560743 AK125680 NM_001003702	-23689	-	NM_198495 AK292236	-35856	+	BC136889 NM_001001659	-90231	+	NM_001001802 NM_001005287	13527	-	NM_001005328 BC136704 BC136711	40359	-	AK292236 NM_198495	49977	-	BC136868|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##BC136878|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##EF560743|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##AK125680|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##NM_001003702|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##NM_198495|CTAGE4|100128553|CTAGE family, member 4##AK292236|CTAGE8|100142659|CTAGE family, member 8##BC136889|OR2A14|135941|olfactory receptor, family 2, subfamily A, member 14##NM_001001659|OR2A14|135941|olfactory receptor, family 2, subfamily A, member 14##NM_001001802|OR2A42|402317|olfactory receptor, family 2, subfamily A, member 42##NM_001005287|OR2A1|346528|olfactory receptor, family 2, subfamily A, member 1##NM_001005328|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##BC136704|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##BC136711|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##AK292236|CTAGE8|100142659|CTAGE family, member 8##NM_198495|CTAGE4|100128553|CTAGE family, member 4	0.972783	0.925014	CTCF.p2:-19:0.925	denovo_WM_7:43:0.973
chr2	68441567	68441729	reg1002443.p1	9.980	+	TSC_hg19_v1_chr2_+_68384999 BC008304 NM_020143 AK291715 AF349314 AF164799 AK313204 AK223118 L48692 AK225641 BC018152	-56551	+	CU680746 EU831464 EU831551 EU832799 GQ129363 TSC_hg19_v1_chr2_-_68384660 BC036904 BC014022 AL834142 BC066657 BC020271 AK056303 NM_138458 AY541587 AK058090	-57014	-	NM_001190263 NM_001190265 NM_006333 NM_173177 TSC_hg19_v1_chr2_-_68290160	-151488	-	TSC_hg19_v1_chr2_-_68479665 AK307136 AK314893 BC027913 NM_000945	37947	-	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	105452	-	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	150724	+	BC008304|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##NM_020143|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK291715|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF349314|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF164799|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK313204|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK223118|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK225641|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##BC018152|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##EU831464|WDR92|116143|WD repeat domain 92##EU831551|WDR92|116143|WD repeat domain 92##EU832799|WDR92|116143|WD repeat domain 92##GQ129363|WDR92|116143|WD repeat domain 92##BC036904|WDR92|116143|WD repeat domain 92##BC014022|WDR92|116143|WD repeat domain 92##AL834142|WDR92|116143|WD repeat domain 92##BC066657|WDR92|116143|WD repeat domain 92##BC020271|WDR92|116143|WD repeat domain 92##AK056303|WDR92|116143|WD repeat domain 92##NM_138458|WDR92|116143|WD repeat domain 92##AY541587|WDR92|116143|WD repeat domain 92##AK058090|WDR92|116143|WD repeat domain 92##NM_001190263|C1D|10438|C1D nuclear receptor corepressor##NM_001190265|C1D|10438|C1D nuclear receptor corepressor##NM_006333|C1D|10438|C1D nuclear receptor corepressor##NM_173177|C1D|10438|C1D nuclear receptor corepressor##AK307136|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##AK314893|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC027913|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_000945|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin	0.435332	0.0	denovo_WM_7:-76:0.387
chr2	86221354	86221534	reg1001566.p2	9.978	+	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	-105358	-	AY152815 NM_001042437	-126652	-	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-240439	+	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	111539	-	NM_015425	111833	-	NM_017952 TSC_hg19_v1_chr2_+_86333357 AK293962 BC011832 AB528740	111897	+	AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##NM_015425|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##NM_017952|PTCD3|55037|Pentatricopeptide repeat domain 3##AK293962|PTCD3|55037|Pentatricopeptide repeat domain 3##BC011832|PTCD3|55037|Pentatricopeptide repeat domain 3	0.0	0.0	
chr15	96407737	96407894	reg1001944.p2	9.975	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-537496	-	NM_001159644 BC025708 BC111024 AK002037	-1508506	+	NM_001159643 NM_018349 AY656717 BC131527	-1566354	+	BC106083 NM_001145155 FM208183	461346	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	466162	+	AK316086 NM_001145156	467978	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.018989	0.0	
chr8	42142258	42142407	reg1001778.p1	9.973	+	BC090865 TSC_hg19_v1_chr8_+_42128868 AF080158 AK298241 AB209090 BC108694 AK290952 BC144080 BX648165	-13417	+	TSC_hg19_v1_chr8_+_42128835 AK302723 AK303294 AK316418 BC006231 AK091297 AK309052	-13497	+	TSC_hg19_v1_chr8_+_42128832 AK303528	-13505	+	NM_002690 AK223537 TSC_hg19_v1_chr8_+_42196014 BC100288 AK294025 AK314976 D29013 M13140 BC106909 AB464039 CR536503 CR541802 L11607	53725	+	AB017788 BC107046 BC107047 AF177397 NM_014420 AK311714 AK301609	92320	-	NM_001135694 NM_005662 TSC_hg19_v1_chr8_+_42249355	106986	+	BC090865|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AF080158|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK298241|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AB209090|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC108694|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK290952|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC144080|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BX648165|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK302723|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK303294|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK316418|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC006231|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK091297|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK303528|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_002690|POLB|5423|polymerase (DNA directed), beta##AK223537|POLB|5423|polymerase (DNA directed), beta##BC100288|POLB|5423|polymerase (DNA directed), beta##AK294025|POLB|5423|polymerase (DNA directed), beta##AK314976|POLB|5423|polymerase (DNA directed), beta##D29013|POLB|5423|polymerase (DNA directed), beta##M13140|POLB|5423|polymerase (DNA directed), beta##BC106909|POLB|5423|polymerase (DNA directed), beta##CR536503|POLB|5423|polymerase (DNA directed), beta##CR541802|POLB|5423|polymerase (DNA directed), beta##L11607|POLB|5423|polymerase (DNA directed), beta##AB017788|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107046|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107047|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AF177397|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_014420|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AK301609|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_001135694|VDAC3|7419|voltage-dependent anion channel 3##NM_005662|VDAC3|7419|voltage-dependent anion channel 3	0.995001	0.0	
chr11	125225175	125225301	reg1002646.p1	9.972	+	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	-190612	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	-190660	+	TSC_hg19_v1_chr11_-_124981479 BC132716 BC132718 BC144270 BC144276 BC144277	-243769	-	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	140903	-	TSC_hg19_v1_chr11_+_125439294 NM_001007277 NM_004879	214057	+	TSC_hg19_v1_chr11_+_125439332 AB209820	214087	+	BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##BC132716|TMEM218|219854|transmembrane protein 218##BC132718|TMEM218|219854|transmembrane protein 218##BC144270|TMEM218|219854|transmembrane protein 218##BC144276|TMEM218|219854|transmembrane protein 218##BC144277|TMEM218|219854|transmembrane protein 218##U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_001007277|EI24|9538|etoposide induced 2.4 mRNA##NM_004879|EI24|9538|etoposide induced 2.4 mRNA##AB209820|EI24|9538|etoposide induced 2.4 mRNA	1.937202	0.752869	denovo_WM_7:-50:0.680	CTCF.p2:58:0.753	denovo_WM_7:-67:0.901
chr16	3150394	3150498	reg1001926.p1	9.970	+	TSC_hg19_v1_chr16_-_3149286 AK074736	-1164	-	BC114452 AK027455 NM_032805	-7597	-	BC105602 TSC_hg19_v1_chr16_+_3115641 BC018782 NM_001012632 M59807 NM_001012636 AB590933 EU339107 JN546102	-34720	+	TSC_hg19_v1_chr16_+_3162586 NM_001042428 NM_003456 AK313009 AF060865 BC002810	12149	+	TSC_hg19_v1_chr16_-_3184862 AF098968	34425	-	AF017433 TSC_hg19_v1_chr16_+_3184980	34506	+	AK074736|ZSCAN10|84891|zinc finger and SCAN domain containing 10##BC114452|ZSCAN10|84891|zinc finger and SCAN domain containing 10##AK027455|ZSCAN10|84891|zinc finger and SCAN domain containing 10##NM_032805|ZSCAN10|84891|zinc finger and SCAN domain containing 10##BC105602|IL32|9235|interleukin 32##BC018782|IL32|9235|interleukin 32##NM_001012632|IL32|9235|interleukin 32##M59807|IL32|9235|interleukin 32##NM_001012636|IL32|9235|interleukin 32##EU339107|IL32|9235|interleukin 32##NM_001042428|ZNF205|7755|zinc finger protein 205##NM_003456|ZNF205|7755|zinc finger protein 205##AK313009|ZNF205|7755|zinc finger protein 205##AF060865|ZNF205|7755|zinc finger protein 205##BC002810|ZNF205|7755|zinc finger protein 205##AF017433|ZNF213|7760|zinc finger protein 213	0.996889	0.0	
chr6	81197972	81198091	reg1002191.p1	9.969	+	TSC_hg19_v1_chr6_+_80816397 AK289977 BC040139 M55575 AB529112 BT020063 X52446	-381594	+	TSC_hg19_v1_chr6_+_80816387 AK316545 BC034481	-381648	+	TSC_hg19_v1_chr6_+_80816367 NM_000056 NM_183050 AK304353 U50708	-381704	+	AY740520 FJ211061 CU674334 CU675631 TSC_hg19_v1_chr6_-_82461975	1263890	-	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	1264380	-	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	1759382	-	AK289977|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC040139|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##M55575|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BT020063|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##X52446|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK316545|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC034481|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_000056|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_183050|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK304353|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##U50708|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AY740520|FAM46A|55603|family with sequence similarity 46, member A##AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase	0.991731	0.0	denovo_WM_7:-22:0.228	denovo_WM_7:-23:0.228	denovo_WM_7:-24:0.228	denovo_WM_7:-25:0.228
chr19	42942672	42942815	reg1007629.p1	9.968	+	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	-11205	-	TSC_hg19_v1_chr19_-_42928157 BC029301	-14530	-	TSC_hg19_v1_chr19_+_42901325 AK311181	-41431	+	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	4381	-	X16356 TSC_hg19_v1_chr19_-_43031473	88666	-	M76742 S71326 CU677011 AY766113 TSC_hg19_v1_chr19_-_43032631 D90311 X14831 X16354 D90313 J03858 BC024164 BC014473 D12502 D90312 M69176 M72238 AL833584 AK314211 NM_001024912 NM_001184813 NM_001184815 NM_001184816 NM_001205344 NM_001712	89849	-	AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive##BC029301|LIPE|3991|lipase, hormone-sensitive##BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17##X16356|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M76742|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##S71326|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AY766113|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90311|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X14831|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X16354|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90313|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##J03858|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC024164|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC014473|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D12502|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90312|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M69176|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M72238|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AL833584|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AK314211|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001024912|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184813|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184815|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184816|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001205344|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001712|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	0.0	0.043434	
chr11	110198925	110199051	reg1002139.p1	9.966	+	TSC_hg19_v1_chr11_-_110167340 BC002626 BC020751 BC047109 AK312903 AK316061 DQ916738 DQ916739 DQ916740 DQ916741 DQ916742 NM_002906	-31675	-	NM_033390 AK295437 TSC_hg19_v1_chr11_+_109964174	-234858	+	AK095101 TSC_hg19_v1_chr11_+_109963524	-235460	+	TSC_hg19_v1_chr11_+_110300641 NM_004109 BC010284 BC017063 J03548 AB096243 M18003 M34788 AB463632 BT006681	101728	+	AY496266 TSC_hg19_v1_chr11_-_110582834	383815	-	TSC_hg19_v1_chr11_-_110582887 AB037812	383937	-	BC002626|RDX|5962|radixin##BC020751|RDX|5962|radixin##BC047109|RDX|5962|radixin##AK312903|RDX|5962|radixin##AK316061|RDX|5962|radixin##DQ916738|RDX|5962|radixin##DQ916739|RDX|5962|radixin##DQ916740|RDX|5962|radixin##DQ916741|RDX|5962|radixin##DQ916742|RDX|5962|radixin##NM_002906|RDX|5962|radixin##NM_033390|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AK295437|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AK095101|ZC3H12C|85463|zinc finger CCCH-type containing 12C##NM_004109|FDX1|2230|ferredoxin 1##BC010284|FDX1|2230|ferredoxin 1##BC017063|FDX1|2230|ferredoxin 1##J03548|FDX1|2230|ferredoxin 1##AB096243|FDX1|2230|ferredoxin 1##M18003|FDX1|2230|ferredoxin 1##M34788|FDX1|2230|ferredoxin 1##BT006681|FDX1|2230|ferredoxin 1##AY496266|ARHGAP20|57569|Rho GTPase activating protein 20##AB037812|ARHGAP20|57569|Rho GTPase activating protein 20	0.996203	0.0	
chr5	133979041	133979221	reg1001830.p2	9.966	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	-10634	-	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-117326	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-117768	+	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	5300	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	95179	+	NM_014829 TSC_hg19_v1_chr5_+_134094470 AK126011 AK291788 BC105598 AF106680 AB018344 BC012304 CU680282	115412	+	BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand##NM_014829|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK126011|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK291788|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC105598|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AF106680|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AB018344|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC012304|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.995673	0.0	
chr6	139191708	139191870	reg1001607.p1	9.966	+	NM_001077706 NM_001195037	-74542	+	AK092592 AX747618 NM_001242740	-96988	-	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	-96999	+	BC021211 TSC_hg19_v1_chr6_-_139309122 AB209143	117288	-	TSC_hg19_v1_chr6_-_139309357 BC035286 AK312938	117559	-	TSC_hg19_v1_chr6_-_139309391 BC012764 NM_001128617 NM_031922	117621	-	NM_001077706|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##NM_001195037|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##AK092592|LOC100507462|100507462|uncharacterized LOC100507462##NM_001242740|LOC100507462|100507462|uncharacterized LOC100507462##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A##BC021211|REPS1|85021|RALBP1 associated Eps domain containing 1##AB209143|REPS1|85021|RALBP1 associated Eps domain containing 1##BC035286|REPS1|85021|RALBP1 associated Eps domain containing 1##AK312938|REPS1|85021|RALBP1 associated Eps domain containing 1##BC012764|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_001128617|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_031922|REPS1|85021|RALBP1 associated Eps domain containing 1	0.161841	0.0	
chr12	125402232	125402357	reg1001756.p2	9.965	+	NM_021009	-2708	-	AY732488 AY819759 BC008955 BC080583 AB209782 BC000449 AK056939 AK098827 AK129749 AK291539 BC039193 BC093445 AB009010 TSC_hg19_v1_chr12_-_125399197 AK026846	-3121	-	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	-53821	-	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	71350	-	TSC_hg19_v1_chr12_+_125478217 NM_080626 BC034525	75896	+	TSC_hg19_v1_chr12_+_125478249 AF284094	75966	+	NM_021009|UBC|7316|ubiquitin C##AY732488|UBC|7316|ubiquitin C##AY819759|UBC|7316|ubiquitin C##BC008955|UBC|7316|ubiquitin C##BC080583|UBC|7316|ubiquitin C##AB209782|UBC|7316|ubiquitin C##BC000449|UBC|7316|ubiquitin C##AK056939|UBC|7316|ubiquitin C##AK098827|UBC|7316|ubiquitin C##AK129749|UBC|7316|ubiquitin C##AK291539|UBC|7316|ubiquitin C##BC039193|UBC|7316|ubiquitin C##BC093445|UBC|7316|ubiquitin C##AB009010|UBC|7316|ubiquitin C##AK026846|UBC|7316|ubiquitin C##NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_080626|BRI3BP|140707|BRI3 binding protein##BC034525|BRI3BP|140707|BRI3 binding protein##AF284094|BRI3BP|140707|BRI3 binding protein	0.930038	0.0	denovo_WM_7:-16:0.609
chr2	74406269	74406449	reg1001793.p2	9.965	+	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	-452	-	AL122062 TSC_hg19_v1_chr2_-_74382411	-23978	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-31139	+	AK057260 TSC_hg19_v1_chr2_-_74425749	19356	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	19378	+	AF243499 AF293338 NM_021196	135791	-	AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AF243499|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##AF293338|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##NM_021196|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5	0.985336	0.217967	CTCF.p2:-8:0.218	denovo_WM_7:26:0.430	denovo_WM_7:27:0.430
chr7	148888297	148888399	reg1001785.p2	9.965	+	TSC_hg19_v1_chr7_+_148844772 AY049744 AB527270 CU692152	-43589	+	TSC_hg19_v1_chr7_+_148844532 AK026380 NM_170686 BC043295 AK290499	-43819	+	TSC_hg19_v1_chr7_+_148823499 AY049743 NM_020781	-64846	+	D30612 TSC_hg19_v1_chr7_+_148892683 NM_003575 AK299280 BC073805 AK316282 AB587508 BC055287 BC041704	4341	+	TSC_hg19_v1_chr7_+_148936741 AK074821 NM_012256 BC022785 EU446738 CU692712	48446	+	TSC_hg19_v1_chr7_+_148959286 AK131504 NM_001195220 BC131569 AB528912	70972	+	AY049744|ZNF398|57541|zinc finger protein 398##AK026380|ZNF398|57541|zinc finger protein 398##NM_170686|ZNF398|57541|zinc finger protein 398##BC043295|ZNF398|57541|zinc finger protein 398##AK290499|ZNF398|57541|zinc finger protein 398##AY049743|ZNF398|57541|zinc finger protein 398##NM_020781|ZNF398|57541|zinc finger protein 398##D30612|ZNF282|8427|zinc finger protein 282##NM_003575|ZNF282|8427|zinc finger protein 282##AK299280|ZNF282|8427|zinc finger protein 282##BC073805|ZNF282|8427|zinc finger protein 282##AK316282|ZNF282|8427|zinc finger protein 282##BC055287|ZNF282|8427|zinc finger protein 282##BC041704|ZNF282|8427|zinc finger protein 282##AK074821|ZNF212|7988|zinc finger protein 212##NM_012256|ZNF212|7988|zinc finger protein 212##BC022785|ZNF212|7988|zinc finger protein 212##EU446738|ZNF212|7988|zinc finger protein 212##NM_001195220|ZNF783|100289678|zinc finger family member 783	1.987962	0.0	denovo_WM_7:34:0.266	denovo_WM_7:35:0.717	denovo_WM_7:50:0.853
chr1	154121470	154121595	reg1002092.p2	9.963	+	AK312070 BC070219 TSC_hg19_v1_chr1_+_153963237 D28454 NM_001030 L19739 BC002658 U57847	-158284	+	BC009227 AF498948 BT019700 BT019701 AY423722 CU674404 AB464116 TSC_hg19_v1_chr1_-_153958723 AM392651 AM393152 AM393265 AM393465 AM393739 AM393810 AK128675 BC073168 AK291580 BC000799 NM_002870 X75593 BC094846	-162758	-	NM_006694	-171082	-	AK128000 NM_001159484 NM_207308	6059	-	AF474157 AB529194 TSC_hg19_v1_chr1_-_154155632 AY004867 AK125367	34081	-	BC000771 TSC_hg19_v1_chr1_-_154155636	34104	-	AK312070|RPS27|6232|ribosomal protein S27##BC070219|RPS27|6232|ribosomal protein S27##D28454|RPS27|6232|ribosomal protein S27##NM_001030|RPS27|6232|ribosomal protein S27##L19739|RPS27|6232|ribosomal protein S27##BC002658|RPS27|6232|ribosomal protein S27##U57847|RPS27|6232|ribosomal protein S27##BC009227|RAB13|5872|RAB13, member RAS oncogene family##AF498948|RAB13|5872|RAB13, member RAS oncogene family##BT019700|RAB13|5872|RAB13, member RAS oncogene family##BT019701|RAB13|5872|RAB13, member RAS oncogene family##AY423722|RAB13|5872|RAB13, member RAS oncogene family##AM392651|RAB13|5872|RAB13, member RAS oncogene family##AM393152|RAB13|5872|RAB13, member RAS oncogene family##AM393265|RAB13|5872|RAB13, member RAS oncogene family##AM393465|RAB13|5872|RAB13, member RAS oncogene family##AM393739|RAB13|5872|RAB13, member RAS oncogene family##AM393810|RAB13|5872|RAB13, member RAS oncogene family##AK128675|RAB13|5872|RAB13, member RAS oncogene family##BC073168|RAB13|5872|RAB13, member RAS oncogene family##AK291580|RAB13|5872|RAB13, member RAS oncogene family##BC000799|RAB13|5872|RAB13, member RAS oncogene family##NM_002870|RAB13|5872|RAB13, member RAS oncogene family##X75593|RAB13|5872|RAB13, member RAS oncogene family##BC094846|RAB13|5872|RAB13, member RAS oncogene family##NM_006694|JTB|10899|jumping translocation breakpoint##AK128000|NUP210L|91181|nucleoporin 210kDa-like##NM_001159484|NUP210L|91181|nucleoporin 210kDa-like##NM_207308|NUP210L|91181|nucleoporin 210kDa-like##AF474157|TPM3|7170|tropomyosin 3##AY004867|TPM3|7170|tropomyosin 3##AK125367|TPM3|7170|tropomyosin 3##BC000771|TPM3|7170|tropomyosin 3	0.996631	0.0	denovo_WM_7:36:0.542	denovo_WM_7:38:0.282
chr10	71187004	71187109	reg1001715.p1	9.962	+	AK300649 BC033742 AK291996 NM_001057	-10436	-	TSC_hg19_v1_chr10_+_71078629 BC008730 DQ893281 DQ896762 CU679065 AB384968	-108391	+	AK309904 TSC_hg19_v1_chr10_+_71078627	-108429	+	TSC_hg19_v1_chr10_+_71211220 NM_012339 BC003157 BC004161 AF120266	24205	+	TSC_hg19_v1_chr10_+_71211325 AB529132 CU678410	24277	+	BC074938 BC074939 BC117488 BC126468 BC069098 AK313952 NM_020999	146044	-	AK300649|TACR2|6865|tachykinin receptor 2##BC033742|TACR2|6865|tachykinin receptor 2##AK291996|TACR2|6865|tachykinin receptor 2##NM_001057|TACR2|6865|tachykinin receptor 2##BC008730|HK1|3098|hexokinase 1##DQ893281|HK1|3098|hexokinase 1##DQ896762|HK1|3098|hexokinase 1##AK309904|HK1|3098|hexokinase 1##NM_012339|TSPAN15|23555|tetraspanin 15##BC003157|TSPAN15|23555|tetraspanin 15##BC004161|TSPAN15|23555|tetraspanin 15##AF120266|TSPAN15|23555|tetraspanin 15##BC074938|NEUROG3|50674|neurogenin 3##BC074939|NEUROG3|50674|neurogenin 3##BC117488|NEUROG3|50674|neurogenin 3##BC126468|NEUROG3|50674|neurogenin 3##BC069098|NEUROG3|50674|neurogenin 3##AK313952|NEUROG3|50674|neurogenin 3##NM_020999|NEUROG3|50674|neurogenin 3	1.08406	0.82004	CTCF.p2:-2:0.820	denovo_WM_7:-31:0.212	denovo_WM_7:-32:0.213	denovo_WM_7:-33:0.261	denovo_WM_7:-34:0.263
chr18	42258957	42259069	reg1001695.p2	9.961	+	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	-1401584	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	-1563444	-	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-2723780	+	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	1101	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	1855	+	NM_001242692 AK292422	533939	+	EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2	0.0	0.0	
chr3	142899482	142899624	reg1001745.p2	9.960	+	BC067737 TSC_hg19_v1_chr3_+_142895211	-4382	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-60902	+	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	-179123	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	667714	-	NM_173552 AK315082	791099	+	TSC_hg19_v1_chr3_+_143690915 BC037293	791437	+	NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58	0.940999	0.0	denovo_WM_7:41:0.354	denovo_WM_7:42:0.255
chr11	123134479	123134617	reg1002385.p2	9.956	+	AK026068 NM_024769 TSC_hg19_v1_chr11_-_123066023	-68543	-	AY326422 AY358340 TSC_hg19_v1_chr11_-_123065957 AK304843	-68646	-	TSC_hg19_v1_chr11_-_122932848 NM_006597 NM_153201 AK310467	-201669	-	TSC_hg19_v1_chr11_+_123396366 AK127457	261807	+	TSC_hg19_v1_chr11_+_123396479 NM_020716 BC105741 BC105931 BC105932 BC107480	261956	+	TSC_hg19_v1_chr11_+_123430975 AK297606 AK307795	296425	+	AK026068|CLMP|79827|CXADR-like membrane protein##NM_024769|CLMP|79827|CXADR-like membrane protein##AY326422|CLMP|79827|CXADR-like membrane protein##AY358340|CLMP|79827|CXADR-like membrane protein##AK304843|CLMP|79827|CXADR-like membrane protein##NM_006597|HSPA8|3312|heat shock 70kDa protein 8##NM_153201|HSPA8|3312|heat shock 70kDa protein 8##AK310467|HSPA8|3312|heat shock 70kDa protein 8##AK127457|GRAMD1B|57476|GRAM domain containing 1B##NM_020716|GRAMD1B|57476|GRAM domain containing 1B##BC105741|GRAMD1B|57476|GRAM domain containing 1B##BC105931|GRAMD1B|57476|GRAM domain containing 1B##BC105932|GRAMD1B|57476|GRAM domain containing 1B##BC107480|GRAMD1B|57476|GRAM domain containing 1B##AK297606|GRAMD1B|57476|GRAM domain containing 1B##AK307795|GRAMD1B|57476|GRAM domain containing 1B	0.999559	0.0	
chr4	17615470	17615650	reg1002381.p1	9.954	+	TSC_hg19_v1_chr4_+_17579121 AK298613 AK307723 AK225511 BC006199 AK298790	-36430	+	TSC_hg19_v1_chr4_+_17579057 BC065564 CR457128 AK022055	-36484	+	TSC_hg19_v1_chr4_+_17578852 NM_015907	-36678	+	TSC_hg19_v1_chr4_+_17616263 AF318059 AK313928 AF358829 NM_025205 BC011936 AF317680 DQ893391 DQ896713 AF317679 AF317678	706	+	AK308144 NM_015688	167574	-	BC050697 TSC_hg19_v1_chr4_-_17806917	191308	-	AK298613|LAP3|51056|leucine aminopeptidase 3##AK307723|LAP3|51056|leucine aminopeptidase 3##AK225511|LAP3|51056|leucine aminopeptidase 3##BC006199|LAP3|51056|leucine aminopeptidase 3##AK298790|LAP3|51056|leucine aminopeptidase 3##BC065564|LAP3|51056|leucine aminopeptidase 3##CR457128|LAP3|51056|leucine aminopeptidase 3##AK022055|LAP3|51056|leucine aminopeptidase 3##NM_015907|LAP3|51056|leucine aminopeptidase 3##AF318059|MED28|80306|mediator complex subunit 28##AK313928|MED28|80306|mediator complex subunit 28##AF358829|MED28|80306|mediator complex subunit 28##NM_025205|MED28|80306|mediator complex subunit 28##BC011936|MED28|80306|mediator complex subunit 28##AF317680|MED28|80306|mediator complex subunit 28##DQ893391|MED28|80306|mediator complex subunit 28##DQ896713|MED28|80306|mediator complex subunit 28##AF317679|MED28|80306|mediator complex subunit 28##AF317678|MED28|80306|mediator complex subunit 28##AK308144|FAM184B|27146|family with sequence similarity 184, member B##NM_015688|FAM184B|27146|family with sequence similarity 184, member B##BC050697|DCAF16|54876|DDB1 and CUL4 associated factor 16	1.985279	0.0	denovo_WM_7:-32:0.976	denovo_WM_7:-47:0.978
chr2	178637338	178637485	reg1002055.p1	9.953	+	AK292395 BC042848 NM_152275	-153726	-	TSC_hg19_v1_chr2_-_178483463 CU692122 AK057530 AK125104 BC048006	-153983	-	TSC_hg19_v1_chr2_-_178417525 AK296828 AK055552 BC033795 NM_152517	-219926	-	AJ251509 NM_001077196	116053	-	AF281865 NM_001077358	150131	-	BC112393 BC114431 AB036704 NM_016953 TSC_hg19_v1_chr2_-_178937505 AK309155	300097	-	AK292395|TTC30A|92104|tetratricopeptide repeat domain 30A##BC042848|TTC30A|92104|tetratricopeptide repeat domain 30A##NM_152275|TTC30A|92104|tetratricopeptide repeat domain 30A##AK057530|TTC30A|92104|tetratricopeptide repeat domain 30A##AK125104|TTC30A|92104|tetratricopeptide repeat domain 30A##BC048006|TTC30A|92104|tetratricopeptide repeat domain 30A##AK296828|TTC30B|150737|tetratricopeptide repeat domain 30B##AK055552|TTC30B|150737|tetratricopeptide repeat domain 30B##BC033795|TTC30B|150737|tetratricopeptide repeat domain 30B##NM_152517|TTC30B|150737|tetratricopeptide repeat domain 30B##AJ251509|PDE11A|50940|phosphodiesterase 11A##NM_001077196|PDE11A|50940|phosphodiesterase 11A##AF281865|PDE11A|50940|phosphodiesterase 11A##NM_001077358|PDE11A|50940|phosphodiesterase 11A##BC112393|PDE11A|50940|phosphodiesterase 11A##BC114431|PDE11A|50940|phosphodiesterase 11A##AB036704|PDE11A|50940|phosphodiesterase 11A##NM_016953|PDE11A|50940|phosphodiesterase 11A	0.997729	0.648872	CTCF.p2:-21:0.637	denovo_WM_7:36:0.470	denovo_WM_7:37:0.527
chr2	8453552	8453635	reg1001141.p1	9.952	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1396006	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1435730	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1446890	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	368610	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	524126	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	690228	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.99768	0.0	denovo_WM_7:-22:0.684
chr3	105472107	105472264	reg1001684.p1	9.952	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-51131	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-386363	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-386605	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	115622	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1487294	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1487407	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.200933	0.0	
chr10	102025157	102025279	reg1002790.p1	9.950	+	TSC_hg19_v1_chr10_-_101989343 NM_001278 AF080157	-35860	-	U22512 AF012890 AB590489 BC092514 TSC_hg19_v1_chr10_-_101989331 AF009225 AB209028	-35952	-	TSC_hg19_v1_chr10_-_101945787 AF064093 NM_001100626	-79416	-	AL832515 CU679081 AK023984 BC008746 AK001860 AK225590 TSC_hg19_v1_chr10_-_102027422 AK295303 AK097895 NM_018294	2168	-	BC020494 AY278457 AK054697 NM_001001342	20812	-	AY531265 AB463442 TSC_hg19_v1_chr10_-_102046438 AB593084 AK298969 NM_173809	21220	-	NM_001278|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF080157|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##U22512|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF012890|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC092514|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF009225|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AB209028|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF064093|ERLIN1|10613|ER lipid raft associated 1##NM_001100626|ERLIN1|10613|ER lipid raft associated 1##AL832515|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK023984|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC008746|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK001860|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK225590|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK295303|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK097895|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##NM_018294|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC020494|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY278457|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK054697|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_001001342|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY531265|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AB593084|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK298969|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_173809|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2	2.924084	0.0	denovo_WM_7:28:0.908	denovo_WM_7:53:0.960	denovo_WM_7:72:0.815
chr10	64888236	64888354	reg1002181.p2	9.949	+	AK312813 NM_001136178	-309369	-	TSC_hg19_v1_chr10_-_64576127 NM_000399 NM_001136177 NM_001136179	-312148	-	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	-312198	-	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	4736	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	4851	+	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	140620	-	AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##NM_000399|EGR2|1959|early growth response 2##NM_001136177|EGR2|1959|early growth response 2##NM_001136179|EGR2|1959|early growth response 2##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C	0.989793	0.0	denovo_WM_7:-18:0.322	denovo_WM_7:-19:0.322	denovo_WM_7:-20:0.322
chr7	56132847	56133001	reg1002081.p3	9.949	+	AK297793 TSC_hg19_v1_chr7_+_56132003 AY323911 BC006159 BC015600 BC000224	-903	+	BC065222 TSC_hg19_v1_chr7_+_56131978 CR936757 AK298605 CR936749 AY359103 BC084539 AK297042 AK301627 AL050037	-939	+	NM_001042469 NM_001042470 NM_001130069 NM_001146333 NM_015411 TSC_hg19_v1_chr7_+_56131966 AK075477 AK300488 BC111092	-983	+	BC069655 BC069679 BC069738 BC069754 X80590 BC051327 AK300928 AK293180 AK299429 AK309503 AK312851 NM_006213	27722	-	AY605046 CU688146 EU832651 EU832729 AY633613 BC015639 TSC_hg19_v1_chr7_-_56174144 BC100275 Z36851 BC003079 BC071985 BC066331	41201	-	TSC_hg19_v1_chr7_-_56174151 AF078845	41235	-	AK297793|SUMF2|25870|sulfatase modifying factor 2##AY323911|SUMF2|25870|sulfatase modifying factor 2##BC006159|SUMF2|25870|sulfatase modifying factor 2##BC015600|SUMF2|25870|sulfatase modifying factor 2##BC000224|SUMF2|25870|sulfatase modifying factor 2##BC065222|SUMF2|25870|sulfatase modifying factor 2##CR936757|SUMF2|25870|sulfatase modifying factor 2##AK298605|SUMF2|25870|sulfatase modifying factor 2##CR936749|SUMF2|25870|sulfatase modifying factor 2##AY359103|SUMF2|25870|sulfatase modifying factor 2##BC084539|SUMF2|25870|sulfatase modifying factor 2##AK297042|SUMF2|25870|sulfatase modifying factor 2##AK301627|SUMF2|25870|sulfatase modifying factor 2##AL050037|SUMF2|25870|sulfatase modifying factor 2##NM_001042469|SUMF2|25870|sulfatase modifying factor 2##NM_001042470|SUMF2|25870|sulfatase modifying factor 2##NM_001130069|SUMF2|25870|sulfatase modifying factor 2##NM_001146333|SUMF2|25870|sulfatase modifying factor 2##NM_015411|SUMF2|25870|sulfatase modifying factor 2##AK075477|SUMF2|25870|sulfatase modifying factor 2##AK300488|SUMF2|25870|sulfatase modifying factor 2##BC111092|SUMF2|25870|sulfatase modifying factor 2##BC069655|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069679|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069738|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069754|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##X80590|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC051327|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK300928|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK293180|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK299429|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK309503|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK312851|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##NM_006213|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AY605046|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832651|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832729|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AY633613|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC015639|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC100275|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC003079|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC071985|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC066331|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AF078845|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2	1.017552	0.0	
chr10	102137760	102137910	reg1002100.p1	9.946	+	AK023036 TSC_hg19_v1_chr10_+_102133657	-4207	+	TSC_hg19_v1_chr10_+_102123601 AF113690	-14323	+	TSC_hg19_v1_chr10_+_102121379 AF109362	-16452	+	Y11094 NM_003393 AB073637	84970	+	AF274863 BX640914 BC044569 BC053949 BC034946 NM_015490 AK289975 BC071580 AK294551	141815	-	CR533490 DQ893286 DQ896618 EU831639 EU831723 TSC_hg19_v1_chr10_-_102289622 AF044958 AK289579 BC000466 BC019276	151780	-	AK023036|LINC00263|90271|long intergenic non-protein coding RNA 263##AF109362|SCD|6319|stearoyl-CoA desaturase (delta-9-desaturase)##Y11094|WNT8B|7479|wingless-type MMTV integration site family, member 8B##NM_003393|WNT8B|7479|wingless-type MMTV integration site family, member 8B##AB073637|WNT8B|7479|wingless-type MMTV integration site family, member 8B##AF274863|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BX640914|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC044569|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC053949|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC034946|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##NM_015490|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK289975|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC071580|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK294551|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##CR533490|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##DQ893286|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##DQ896618|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##EU831639|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##EU831723|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AF044958|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AK289579|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##BC000466|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##BC019276|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa	0.996167	0.0	denovo_WM_7:18:0.889
chr14	91961846	91961974	reg1001087.p1	9.944	+	TSC_hg19_v1_chr14_-_91884165 NM_001080414	-77735	-	TSC_hg19_v1_chr14_-_91884159 AF070587	-77762	-	BC098567 NM_003485	-241716	-	BC072409 AB095930 TSC_hg19_v1_chr14_-_91976621	14590	-	TSC_hg19_v1_chr14_-_91976644 NM_032560	14727	-	TSC_hg19_v1_chr14_-_91976823 AK000714 BC038932 BC022778	14897	-	NM_001080414|CCDC88C|440193|coiled-coil domain containing 88C##AF070587|CCDC88C|440193|coiled-coil domain containing 88C##BC098567|GPR68|8111|G protein-coupled receptor 68##NM_003485|GPR68|8111|G protein-coupled receptor 68##BC072409|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##AB095930|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##NM_032560|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##AK000714|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##BC038932|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##BC022778|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	0.0	0.0	
chr3	69490332	69490470	reg1002567.p1	9.944	+	NM_015123 BC057836	-54960	-	AB023230 TSC_hg19_v1_chr3_-_69435240	-55170	-	TSC_hg19_v1_chr3_-_69299315 AK295045	-191091	-	TSC_hg19_v1_chr3_-_69591738 AK091076	101356	-	TSC_hg19_v1_chr3_+_69788632 NM_198159 AK291318 AL110195 AB006909 AB527520	298252	+	TSC_hg19_v1_chr3_+_69812620 AK296129 NM_001184967	322262	+	NM_015123|FRMD4B|23150|FERM domain containing 4B##BC057836|FRMD4B|23150|FERM domain containing 4B##AB023230|FRMD4B|23150|FERM domain containing 4B##AK295045|FRMD4B|23150|FERM domain containing 4B##AK091076|FRMD4B|23150|FERM domain containing 4B##NM_198159|MITF|4286|microphthalmia-associated transcription factor##AK291318|MITF|4286|microphthalmia-associated transcription factor##AL110195|MITF|4286|microphthalmia-associated transcription factor##AB006909|MITF|4286|microphthalmia-associated transcription factor##AK296129|MITF|4286|microphthalmia-associated transcription factor##NM_001184967|MITF|4286|microphthalmia-associated transcription factor	0.412549	0.0	denovo_WM_7:12:0.402
chr5	162932885	162933013	reg1002306.p2	9.941	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-306	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-2661	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-45354	+	HE578282 HE578283 NM_001122679	3778893	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	4785872	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	4980525	+	AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	0.0	0.0	
chr13	99164728	99164908	reg1001808.p3	9.936	+	TSC_hg19_v1_chr13_+_99058147 AF339817	-106612	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-335313	-	TSC_hg19_v1_chr13_+_98795717 AB008430 BC065020	-369100	+	AF083420 NM_003576	9477	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	64236	-	AF024636 AK297583 AK299140 TSC_hg19_v1_chr13_-_99229127	64304	-	EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##AB008430|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC065020|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24##AF024636|STK24|8428|serine/threonine kinase 24##AK297583|STK24|8428|serine/threonine kinase 24##AK299140|STK24|8428|serine/threonine kinase 24	1.690625	0.0	denovo_WM_7:15:0.239	denovo_WM_7:16:0.239	denovo_WM_7:17:0.239	denovo_WM_7:18:0.239	denovo_WM_7:-21:0.586
chr6_cox_hap2	2686856	2686988	reg1002391.p3	9.936	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999642	0.0	
chr2	211326397	211326544	reg1002196.p2	9.932	+	AB527940 CR456869 TSC_hg19_v1_chr2_-_211179896 NM_079420 AK311942	-146631	-	X05451 M20643 AK311892 BC005318 NM_079422	-158144	-	BC064549 BC039063 AK313498 AK296161 NM_001608	-236290	-	TSC_hg19_v1_chr2_-_211341454 AK294674 BC028685 NM_001136574 Y11395 AK309295 AK312381 NM_006055 NM_001136575	14983	-	NM_001122633 AB208800	15948	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	94919	+	CR456869|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##NM_079420|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##AK311942|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##X05451|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##M20643|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##AK311892|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##BC005318|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##NM_079422|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##BC064549|ACADL|33|acyl-CoA dehydrogenase, long chain##BC039063|ACADL|33|acyl-CoA dehydrogenase, long chain##AK313498|ACADL|33|acyl-CoA dehydrogenase, long chain##AK296161|ACADL|33|acyl-CoA dehydrogenase, long chain##NM_001608|ACADL|33|acyl-CoA dehydrogenase, long chain##AK294674|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##BC028685|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##NM_001136574|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##Y11395|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##AK309295|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##AK312381|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##NM_006055|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##NM_001136575|LANCL1|10314|LanC lantibiotic synthetase component C-like 1 (bacterial)##NM_001122633|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB208800|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial	0.916131	0.0	denovo_WM_7:6:0.880
chr5	126144476	126144620	reg1002616.p1	9.930	+	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-31424	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-31666	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	-31717	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	221627	-	NM_178450	221891	-	AK126569 NM_001164478 NM_001164479	264629	-	DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63	0.99406	0.846767	CTCF.p2:-11:0.847	denovo_WM_7:29:0.429	denovo_WM_7:30:0.436
chr1	204660652	204660800	reg1002127.p1	9.929	+	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	-6135	-	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	-175116	+	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	-175224	+	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	137086	+	TSC_hg19_v1_chr1_+_204839989 AK308686	179257	+	NM_001160331 BC137013 BC144454 BC144455 AB384522	252672	+	AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AK308686|NFASC|23114|neurofascin##NM_001160331|NFASC|23114|neurofascin##BC137013|NFASC|23114|neurofascin##BC144454|NFASC|23114|neurofascin##BC144455|NFASC|23114|neurofascin	0.989228	0.0	denovo_WM_7:-59:0.863
chr5	142972430	142972592	reg1001714.p1	9.929	+	NM_001018074 NM_001018075 NM_001018077	-157435	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-188345	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-188479	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	219247	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	577624	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	577665	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	1.989839	0.0	denovo_WM_7:33:0.554	denovo_WM_7:34:0.311	denovo_WM_7:48:0.244	denovo_WM_7:49:0.487
chr3	195839075	195839228	reg1002708.p1	9.927	+	TSC_hg19_v1_chr3_-_195808999 NM_001128148	-30135	-	TSC_hg19_v1_chr3_-_195808984 M11507	-30168	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	-30190	-	BC034801 BC022078 NM_001039617 AK122907	99130	-	AK172837 NM_152672 TSC_hg19_v1_chr3_+_195943404 AK300996	104243	+	L28957 TSC_hg19_v1_chr3_-_196014549 AK309300 AK313450	175384	-	NM_001128148|TFRC|7037|transferrin receptor (p90, CD71)##M11507|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)##BC034801|ZDHHC19|131540|zinc finger, DHHC-type containing 19##BC022078|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001039617|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK122907|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK172837|OSTalpha|200931|organic solute transporter alpha##NM_152672|OSTalpha|200931|organic solute transporter alpha##AK300996|OSTalpha|200931|organic solute transporter alpha##L28957|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309300|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK313450|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha	1.021267	0.0	denovo_WM_7:58:0.224	denovo_WM_7:64:0.527
chr11	12196101	12196241	reg1002109.p1	9.926	+	TSC_hg19_v1_chr11_+_12132122 BC044577 NM_014632 BC015755 AB018293	-64041	+	TSC_hg19_v1_chr11_-_12030884 AB057591 NM_013253	-165269	-	TSC_hg19_v1_chr11_-_12030877 AY358378	-165313	-	AK123671 NM_032867	112275	+	TSC_hg19_v1_chr11_+_12399158 NM_018222 AK098504 AF237771 AK022316 BC016713 AK001655 BC014535 AB464001 EU832601 CU677039 CU677693 AF325830	202938	+	TSC_hg19_v1_chr11_+_12695982 NM_021961	499792	+	BC044577|MICAL2|9645|microtubule associated monoxygenase, calponin and LIM domain containing 2##NM_014632|MICAL2|9645|microtubule associated monoxygenase, calponin and LIM domain containing 2##BC015755|MICAL2|9645|microtubule associated monoxygenase, calponin and LIM domain containing 2##AB018293|MICAL2|9645|microtubule associated monoxygenase, calponin and LIM domain containing 2##AB057591|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_013253|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AY358378|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK123671|MICALCL|84953|MICAL C-terminal like##NM_032867|MICALCL|84953|MICAL C-terminal like##NM_018222|PARVA|55742|parvin, alpha##AK098504|PARVA|55742|parvin, alpha##AF237771|PARVA|55742|parvin, alpha##AK022316|PARVA|55742|parvin, alpha##BC016713|PARVA|55742|parvin, alpha##AK001655|PARVA|55742|parvin, alpha##BC014535|PARVA|55742|parvin, alpha##EU832601|PARVA|55742|parvin, alpha##AF325830|PARVA|55742|parvin, alpha##NM_021961|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)	0.985502	0.0	denovo_WM_7:-23:0.703
chr1	150159411	150159591	reg1000864.p2	9.923	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-37063	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-37197	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-37369	+	AK095228 NM_001136479	47524	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	48766	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	48950	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.846837	0.0	denovo_WM_7:-9:0.637
chr15	101840645	101840785	reg1002171.p1	9.922	+	TSC_hg19_v1_chr15_-_101835457 AK223110 AK312200 X13482 BC022816 AK290078 AK223070 BC067846 NM_003090	-5284	-	TSC_hg19_v1_chr15_-_101835402 AB528428 CU692724 AJ130971 AJ130972 DQ892838 DQ896084 BC071717	-5334	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	-23052	-	TSC_hg19_v1_chr15_-_102029640 AM491522	188922	-	TSC_hg19_v1_chr15_-_102029907 D28513	189175	-	TSC_hg19_v1_chr15_-_102029982 D87993 D87994 D87995	189240	-	AK223110|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK312200|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##X13482|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC022816|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK290078|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223070|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC067846|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##NM_003090|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AJ130971|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AJ130972|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ892838|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ896084|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC071717|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S##AM491522|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D28513|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87993|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87994|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87995|PCSK6|5046|proprotein convertase subtilisin/kexin type 6	0.987322	0.401111	denovo_WM_7:20:0.927	CTCF.p2:-44:0.401
chr3	133185471	133185618	reg1002106.p1	9.922	+	NM_003571 BC113518 BC113520 HQ258421 U48224	-66686	+	TSC_hg19_v1_chr3_+_132757234 AY358381 BC000568	-428310	+	NM_001136469 NM_023943 TSC_hg19_v1_chr3_+_132757202	-428357	+	TSC_hg19_v1_chr3_+_133292443 NM_001134422 NM_017548	106932	+	TSC_hg19_v1_chr3_+_133292588 AF103803	107028	+	TSC_hg19_v1_chr3_+_133292835 BC007338	107250	+	NM_003571|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113518|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113520|BFSP2|8419|beaded filament structural protein 2, phakinin##HQ258421|BFSP2|8419|beaded filament structural protein 2, phakinin##U48224|BFSP2|8419|beaded filament structural protein 2, phakinin##AY358381|TMEM108|66000|transmembrane protein 108##BC000568|TMEM108|66000|transmembrane protein 108##NM_001136469|TMEM108|66000|transmembrane protein 108##NM_023943|TMEM108|66000|transmembrane protein 108##NM_001134422|CDV3|55573|CDV3 homolog (mouse)##NM_017548|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)	0.993142	0.0	
chr16	11302814	11302955	reg1002328.p1	9.918	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-264441	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-266649	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-266718	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	47166	-	X63758 BC096135 BC096136 BC096137 NM_005425	60254	-	NM_021247	64567	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.991723	0.0	denovo_WM_7:-10:0.228	denovo_WM_7:-11:0.228	denovo_WM_7:-12:0.228	denovo_WM_7:-13:0.228
chr19	1651371	1651477	reg1001624.p1	9.918	+	AB385055 BC110579 BC110580 M31523 NM_001136139	-1159	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-45951	-	AK312053 TSC_hg19_v1_chr19_-_1605462	-45962	-	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	915	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	102328	+	TSC_hg19_v1_chr19_+_1776120 AK074606	124763	+	BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##AK312053|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001080488|ONECUT3|390874|one cut homeobox 3	0.731399	0.048449	denovo_WM_7:-1:0.270	denovo_WM_7:-2:0.449
chr8	119431404	119431546	reg1002135.p1	9.917	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-307514	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-898433	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-898517	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	202650	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	202732	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	532745	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	1.021393	0.999173	CTCF.p2:11:0.999	denovo_WM_7:42:0.258	denovo_WM_7:44:0.625
chr12	111058187	111058292	reg1001955.p2	9.916	+	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-6314	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-37113	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-37169	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	68719	-	AK293543 NM_001040107	69360	-	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	122307	-	AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	0.987475	0.0	denovo_WM_7:-18:0.489	denovo_WM_7:-19:0.285	denovo_WM_7:-20:0.213
chr19	46210417	46210562	reg1001571.p3	9.916	+	TSC_hg19_v1_chr19_+_46195931 AK000091 AK172764 AK222636 BC011553 AB528634	-14561	+	NM_001163377 NM_017659	-14749	+	NM_004597 NM_177542	-15047	-	TSC_hg19_v1_chr19_-_46220589 AK091414 AX746967	10124	-	TSC_hg19_v1_chr19_-_46234155 NM_001080469	23658	-	AB464211 TSC_hg19_v1_chr19_-_46272110	61626	-	AK000091|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK172764|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK222636|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##BC011553|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_001163377|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_017659|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_004597|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_177542|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_001080469|FBXO46|23403|F-box protein 46	0.986728	0.0	denovo_WM_7:11:0.430	denovo_WM_7:12:0.430
chr3	128952629	128952759	reg1002187.p2	9.913	+	AK054592 TSC_hg19_v1_chr3_-_128902766 BC000288 NM_001127192 NM_001127193 NM_001127194 NM_001127195 NM_001127196 NM_003418	-49876	-	TSC_hg19_v1_chr3_-_128902740 M28372 BC093058 AK314380 BC014911 DQ091187 DQ092366 DQ092367 AK292119 AK298154	-49982	-	TSC_hg19_v1_chr3_-_128890551 BT019613 CU674132 AB463471	-62118	-	TSC_hg19_v1_chr3_+_128968448 AK291693 NM_016128	15753	+	TSC_hg19_v1_chr3_+_128968474 AK001724 AK123939 AK309821 AF100756 BC066650 AB047846 AB527280	15817	+	TSC_hg19_v1_chr3_+_128997674 AF201934 NM_020187 BC088363 AK297501 AK309891 AK225264	44968	+	AK054592|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##BC000288|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127192|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127193|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127194|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127195|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127196|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_003418|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##M28372|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##BC093058|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##AK314380|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##BC014911|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##DQ091187|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##DQ092366|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##DQ092367|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##AK292119|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##AK298154|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##BT019613|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##AK291693|COPG|22820|coatomer protein complex, subunit gamma##NM_016128|COPG|22820|coatomer protein complex, subunit gamma##AK001724|COPG|22820|coatomer protein complex, subunit gamma##AK123939|COPG|22820|coatomer protein complex, subunit gamma##AK309821|COPG|22820|coatomer protein complex, subunit gamma##AF100756|COPG|22820|coatomer protein complex, subunit gamma##BC066650|COPG|22820|coatomer protein complex, subunit gamma##AB047846|COPG|22820|coatomer protein complex, subunit gamma##AF201934|C3orf37|56941|chromosome 3 open reading frame 37##NM_020187|C3orf37|56941|chromosome 3 open reading frame 37##BC088363|C3orf37|56941|chromosome 3 open reading frame 37##AK297501|C3orf37|56941|chromosome 3 open reading frame 37##AK309891|C3orf37|56941|chromosome 3 open reading frame 37##AK225264|C3orf37|56941|chromosome 3 open reading frame 37	1.988589	0.0	denovo_WM_7:105:0.438	denovo_WM_7:106:0.438
chr6	83780846	83780992	reg1002449.p1	9.912	+	TSC_hg19_v1_chr6_+_83777389 BX648667 NM_001199942 NM_015018 AK094766	-3522	+	TSC_hg19_v1_chr6_-_83775541 BC101512 BC101538 BC143617 BC036049 AB126062 NM_198920 BC053645 AK298205 BC057845	-5394	-	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	-706942	+	AF102265 AB032081 AF180371 TSC_hg19_v1_chr6_-_83902977 AK314512 AK225363 AK001365 AK023432 BC001258 NM_001199918 NM_001199919 NM_015599	122053	-	NM_033411 TSC_hg19_v1_chr6_+_83903075 AK309249 AK295724 AK302978 AK313083	122178	+	AK301867 NM_001199917 TSC_hg19_v1_chr6_-_83903693	122743	-	BX648667|DOPEY1|23033|dopey family member 1##NM_001199942|DOPEY1|23033|dopey family member 1##NM_015018|DOPEY1|23033|dopey family member 1##AK094766|DOPEY1|23033|dopey family member 1##BC101512|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC101538|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC143617|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC036049|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AB126062|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##NM_198920|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC053645|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK298205|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC057845|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein##AF102265|PGM3|5238|phosphoglucomutase 3##AB032081|PGM3|5238|phosphoglucomutase 3##AF180371|PGM3|5238|phosphoglucomutase 3##AK314512|PGM3|5238|phosphoglucomutase 3##AK225363|PGM3|5238|phosphoglucomutase 3##AK001365|PGM3|5238|phosphoglucomutase 3##AK023432|PGM3|5238|phosphoglucomutase 3##BC001258|PGM3|5238|phosphoglucomutase 3##NM_001199918|PGM3|5238|phosphoglucomutase 3##NM_001199919|PGM3|5238|phosphoglucomutase 3##NM_015599|PGM3|5238|phosphoglucomutase 3##NM_033411|RWDD2A|112611|RWD domain containing 2A##AK309249|RWDD2A|112611|RWD domain containing 2A##AK295724|RWDD2A|112611|RWD domain containing 2A##AK302978|RWDD2A|112611|RWD domain containing 2A##AK313083|RWDD2A|112611|RWD domain containing 2A##AK301867|PGM3|5238|phosphoglucomutase 3##NM_001199917|PGM3|5238|phosphoglucomutase 3	0.133418	0.0	
chr6	145535756	145535917	reg1002422.p1	9.908	+	NM_007124 X69086	-922918	+	TSC_hg19_v1_chr6_+_144607461 AK292506	-928356	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-1064115	+	AK124757 TSC_hg19_v1_chr6_+_146056061	520198	+	TSC_hg19_v1_chr6_-_146056437 AJ130763 AJ130764	520577	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	520765	-	NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK292506|UTRN|7402|utrophin##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK124757|LOC100507557|100507557|uncharacterized LOC100507557##AJ130763|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AJ130764|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	0.991371	0.99507	CTCF.p2:-12:0.995	denovo_WM_7:39:0.313	denovo_WM_7:40:0.313	denovo_WM_7:41:0.313
chr7	129295765	129295901	reg1002434.p1	9.907	+	L22454 NM_001040110	-25916	+	AK293351 TSC_hg19_v1_chr7_+_129251621 BC016925 AK290891	-44221	+	TSC_hg19_v1_chr7_+_129251531 NM_005011	-44292	+	BC006277 TSC_hg19_v1_chr7_-_129592785 NM_001202498	296918	-	TSC_hg19_v1_chr7_-_129592801 NM_003344 NM_182697	296976	-	TSC_hg19_v1_chr7_-_129691215 BC000190 AB463378 AJ537494 AM393415 CU679956 BC011551 AF151050 AK001317 AK022373 NM_016478	395388	-	L22454|NRF1|4899|nuclear respiratory factor 1##NM_001040110|NRF1|4899|nuclear respiratory factor 1##AK293351|NRF1|4899|nuclear respiratory factor 1##BC016925|NRF1|4899|nuclear respiratory factor 1##AK290891|NRF1|4899|nuclear respiratory factor 1##NM_005011|NRF1|4899|nuclear respiratory factor 1##BC006277|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_001202498|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_003344|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_182697|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC000190|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AJ537494|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AM393415|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC011551|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AF151050|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK001317|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK022373|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_016478|ZC3HC1|51530|zinc finger, C3HC-type containing 1	0.0	0.0	
chr1	15575713	15575842	reg1002179.p1	9.906	+	AK057963 NM_052929	-2010	+	TSC_hg19_v1_chr1_+_15480249 AK001061 NM_001136218 NM_018022 BC000593 BC005177 AK098467	-95529	+	AK129922 TSC_hg19_v1_chr1_+_15479310	-96473	+	TSC_hg19_v1_chr1_+_15736390 NM_024329	160623	+	BC068473 TSC_hg19_v1_chr1_+_15736425 BC007233 BC014923 BC023611	160658	+	BC015118 CR749296 NM_007272 AK289447 BC059779 S82198	189170	+	AK057963|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_052929|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##AK001061|TMEM51|55092|transmembrane protein 51##NM_001136218|TMEM51|55092|transmembrane protein 51##NM_018022|TMEM51|55092|transmembrane protein 51##BC000593|TMEM51|55092|transmembrane protein 51##BC005177|TMEM51|55092|transmembrane protein 51##AK098467|TMEM51|55092|transmembrane protein 51##AK129922|TMEM51|55092|transmembrane protein 51##NM_024329|EFHD2|79180|EF-hand domain family, member D2##BC068473|EFHD2|79180|EF-hand domain family, member D2##BC007233|EFHD2|79180|EF-hand domain family, member D2##BC014923|EFHD2|79180|EF-hand domain family, member D2##BC023611|EFHD2|79180|EF-hand domain family, member D2##BC015118|CTRC|11330|chymotrypsin C (caldecrin)##CR749296|CTRC|11330|chymotrypsin C (caldecrin)##NM_007272|CTRC|11330|chymotrypsin C (caldecrin)##AK289447|CTRC|11330|chymotrypsin C (caldecrin)##BC059779|CTRC|11330|chymotrypsin C (caldecrin)##S82198|CTRC|11330|chymotrypsin C (caldecrin)	0.999659	0.0	denovo_WM_7:17:0.740
chr9	130150564	130150692	reg1001528.p1	9.903	+	NM_032293 AK293732 AK095679	-123821	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-265598	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-265666	-	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	8818	+	TSC_hg19_v1_chr9_-_130186602 AK124330	35938	-	NM_007135 TSC_hg19_v1_chr9_+_130186700 AK054606 BC062309 AK302284	36053	+	NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_007135|ZNF79|7633|zinc finger protein 79##AK054606|ZNF79|7633|zinc finger protein 79##BC062309|ZNF79|7633|zinc finger protein 79##AK302284|ZNF79|7633|zinc finger protein 79	0.999132	0.0	denovo_WM_7:-22:0.239	denovo_WM_7:-23:0.239	denovo_WM_7:-24:0.239	denovo_WM_7:-25:0.239
chr18	54199391	54199556	reg1002378.p1	9.902	+	AB527692 BC031056 NM_001243226	-896315	-	AK315074 AK299169 NM_001243227 NM_001243228	-942435	-	FR748206 FR748216 TSC_hg19_v1_chr18_-_53255849 AK122765 NM_001083962 NM_001243230 NM_003199	-943676	-	AB209263 DQ891846 DQ895034 EU176640 TSC_hg19_v1_chr18_-_54305824 AF051896 AF052659 AK313653	106274	-	TSC_hg19_v1_chr18_-_54305956 BC001156 AF003938 NM_004786	106441	-	TSC_hg19_v1_chr18_+_54318593 AK057141 NM_015285 NM_052834 AB011113 BC150282	119133	+	BC031056|TCF4|6925|transcription factor 4##NM_001243226|TCF4|6925|transcription factor 4##AK315074|TCF4|6925|transcription factor 4##AK299169|TCF4|6925|transcription factor 4##NM_001243227|TCF4|6925|transcription factor 4##NM_001243228|TCF4|6925|transcription factor 4##FR748216|TCF4|6925|transcription factor 4##AK122765|TCF4|6925|transcription factor 4##NM_001083962|TCF4|6925|transcription factor 4##NM_001243230|TCF4|6925|transcription factor 4##NM_003199|TCF4|6925|transcription factor 4##AB209263|TXNL1|9352|thioredoxin-like 1##DQ891846|TXNL1|9352|thioredoxin-like 1##DQ895034|TXNL1|9352|thioredoxin-like 1##EU176640|TXNL1|9352|thioredoxin-like 1##AF051896|TXNL1|9352|thioredoxin-like 1##AF052659|TXNL1|9352|thioredoxin-like 1##AK313653|TXNL1|9352|thioredoxin-like 1##BC001156|TXNL1|9352|thioredoxin-like 1##AF003938|TXNL1|9352|thioredoxin-like 1##NM_004786|TXNL1|9352|thioredoxin-like 1##AK057141|WDR7|23335|WD repeat domain 7##NM_015285|WDR7|23335|WD repeat domain 7##NM_052834|WDR7|23335|WD repeat domain 7##AB011113|WDR7|23335|WD repeat domain 7##BC150282|WDR7|23335|WD repeat domain 7	0.99834	0.0	denovo_WM_7:-89:0.457	denovo_WM_7:-90:0.457
chr19	46849555	46849692	reg1002500.p1	9.902	+	AK021881 TSC_hg19_v1_chr19_+_46844054	-5615	+	AK314680 NM_152794 AB054067	-42734	+	NM_022462 NM_152796 AK297828 AK304747 TSC_hg19_v1_chr19_+_46801682 AK021421 AK021653 AK024095	-47963	+	TSC_hg19_v1_chr19_+_46850343 NM_001204284 NM_006247 BC001970 AK223222 AK312683	671	+	TSC_hg19_v1_chr19_+_46850348 AB527518 AK293402 AK297095 BT007275 BC000750 BC001831 X89416 U25174	736	+	AK297668 AL136609 JN703457 NM_032040	67248	-	AK021881|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK314680|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_152794|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AB054067|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_022462|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_152796|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK297828|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK304747|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK021421|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK021653|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK024095|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_001204284|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_006247|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001970|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK223222|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK312683|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK293402|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297095|PPP5C|5536|protein phosphatase 5, catalytic subunit##BT007275|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC000750|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001831|PPP5C|5536|protein phosphatase 5, catalytic subunit##X89416|PPP5C|5536|protein phosphatase 5, catalytic subunit##U25174|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297668|CCDC8|83987|coiled-coil domain containing 8##AL136609|CCDC8|83987|coiled-coil domain containing 8##JN703457|CCDC8|83987|coiled-coil domain containing 8##NM_032040|CCDC8|83987|coiled-coil domain containing 8	0.997699	0.0	
chr2	196370608	196370765	reg1002450.p1	9.901	+	BC008973 AB017269 AY358907 AK074632 AL157430 AF179274 NM_016192 TSC_hg19_v1_chr2_-_193059657 AF242222 AK222691 AK315376	-3311057	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	-3311372	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	-3658715	-	BC029413 NM_001127257 CR749813	150889	+	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	151222	+	AB463018 AF327442 AK094515 NM_018897 AB023161	562809	-	BC008973|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB017269|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AY358907|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074632|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AL157430|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF179274|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##NM_016192|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF242222|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK222691|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK315376|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7	0.991671	0.0	denovo_WM_7:21:0.350	denovo_WM_7:22:0.642
chr4	128620135	128620267	reg1001911.p2	9.898	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	-66062	+	NM_024582	-2382635	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	-2986387	-	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	31408	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	83232	+	TSC_hg19_v1_chr4_+_128703476 AK027822 AK307464	83275	+	NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like##AK027822|HSPA4L|22824|heat shock 70kDa protein 4-like##AK307464|HSPA4L|22824|heat shock 70kDa protein 4-like	0.997582	0.0	denovo_WM_7:34:0.561	denovo_WM_7:36:0.380
chr4	23335759	23335903	reg1001537.p1	9.897	+	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	-641239	+	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	-818277	-	NM_147182 TSC_hg19_v1_chr4_-_21950396	-1385447	-	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	555822	-	AF279891 TSC_hg19_v1_chr4_-_24586127	1250245	-	TSC_hg19_v1_chr4_-_24586154 AK303506 BC035974	1250329	-	BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##NM_147182|KCNIP4|80333|Kv channel interacting protein 4##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF279891|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##AK303506|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##BC035974|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.996396	0.0	denovo_WM_7:-42:0.317	denovo_WM_7:-44:0.609
chr20	10427826	10427982	reg1002070.p2	9.895	+	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-11928	+	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	-13065	-	AF221993 NM_018848	-15335	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	226300	-	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	226665	-	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	1443545	+	BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3	0.927946	0.0	denovo_WM_7:81:0.222	denovo_WM_7:82:0.682
chr4	141663663	141663800	reg1002003.p1	9.894	+	U28480 BC069556 BC096736 BC098168 BC098258 BC098352 NM_021833	-173811	-	TSC_hg19_v1_chr4_+_141445351 BX648843 BC015168 AK093087	-218376	+	NM_153702 TSC_hg19_v1_chr4_+_141445321 AK312800 BX648349	-218415	+	NM_015130 TSC_hg19_v1_chr4_-_141677529	13768	-	TSC_hg19_v1_chr4_-_142054516 AB033040 NM_020724	390800	-	TSC_hg19_v1_chr4_+_142142051 NM_014487 AK315463 BC004421	478324	+	U28480|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC069556|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC096736|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098168|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098258|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098352|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##NM_021833|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BX648843|ELMOD2|255520|ELMO/CED-12 domain containing 2##BC015168|ELMOD2|255520|ELMO/CED-12 domain containing 2##AK093087|ELMOD2|255520|ELMO/CED-12 domain containing 2##NM_153702|ELMOD2|255520|ELMO/CED-12 domain containing 2##AK312800|ELMOD2|255520|ELMO/CED-12 domain containing 2##BX648349|ELMOD2|255520|ELMO/CED-12 domain containing 2##NM_015130|TBC1D9|23158|TBC1 domain family, member 9 (with GRAM domain)##AB033040|RNF150|57484|ring finger protein 150##NM_020724|RNF150|57484|ring finger protein 150##NM_014487|ZNF330|27309|zinc finger protein 330##AK315463|ZNF330|27309|zinc finger protein 330##BC004421|ZNF330|27309|zinc finger protein 330	1.60681	0.0	denovo_WM_7:27:0.254	denovo_WM_7:30:0.303
chr7	99933616	99933754	reg1002550.p1	9.894	+	AB103084 TSC_hg19_v1_chr7_-_99933502 BC038996 D38435 D38499 BC110395 BC044214 BC067809	-144	-	BC056606 NM_001004351	-28361	+	BC065200 AK290510 TSC_hg19_v1_chr7_-_99869856 BC044886 BC090867 BC033723 BC053367 NM_178831	-63855	-	TSC_hg19_v1_chr7_+_99933747 AK056412 AK310352	70	+	TSC_hg19_v1_chr7_+_99933808 AL834317	137	+	AJ400845 NM_178238 AF161081	21946	+	BC038996|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##D38435|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##D38499|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC110395|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC044214|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC067809|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC056606|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##NM_001004351|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##BC065200|GATS|352954|GATS, stromal antigen 3 opposite strand##AK290510|GATS|352954|GATS, stromal antigen 3 opposite strand##BC044886|GATS|352954|GATS, stromal antigen 3 opposite strand##BC090867|GATS|352954|GATS, stromal antigen 3 opposite strand##BC033723|GATS|352954|GATS, stromal antigen 3 opposite strand##BC053367|GATS|352954|GATS, stromal antigen 3 opposite strand##NM_178831|GATS|352954|GATS, stromal antigen 3 opposite strand##AK056412|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK310352|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AL834317|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta	0.0	0.0	
chr11	9285419	9285545	reg1001971.p1	9.891	+	TSC_hg19_v1_chr11_-_9225783 AK302478	-59661	-	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-172344	-	BC008835 TSC_hg19_v1_chr11_-_9025549 AK024750 AK098694 AK296484 NM_020645	-259919	-	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	1380	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	50577	-	TSC_hg19_v1_chr11_-_9336141 D26067	50656	-	AK302478|DENND5A|23258|DENN/MADD domain containing 5A##BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##BC008835|NRIP3|56675|nuclear receptor interacting protein 3##AK024750|NRIP3|56675|nuclear receptor interacting protein 3##AK098694|NRIP3|56675|nuclear receptor interacting protein 3##AK296484|NRIP3|56675|nuclear receptor interacting protein 3##NM_020645|NRIP3|56675|nuclear receptor interacting protein 3##AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B##D26067|TMEM41B|440026|transmembrane protein 41B	0.993015	0.0	
chr2	178197129	178197256	reg1002073.p1	9.891	+	AK314816 NM_006164	-67334	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	-67816	-	AK311688 NM_001145412 NM_001145413	-68621	-	TSC_hg19_v1_chr2_-_178257411 BC093095 AL833088 AK126517	60215	-	AK309714 TSC_hg19_v1_chr2_+_178257487 NM_003659	60237	+	TSC_hg19_v1_chr2_+_178257497 AK225439 AK314259 Y09443 BC141820 AY544121 AK296239 AK316240	60437	+	AK314816|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_006164|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AL833088|LOC100130691|100130691|uncharacterized LOC100130691##AK126517|LOC100130691|100130691|uncharacterized LOC100130691##AK309714|AGPS|8540|alkylglycerone phosphate synthase##NM_003659|AGPS|8540|alkylglycerone phosphate synthase##AK314259|AGPS|8540|alkylglycerone phosphate synthase##Y09443|AGPS|8540|alkylglycerone phosphate synthase##BC141820|AGPS|8540|alkylglycerone phosphate synthase##AY544121|AGPS|8540|alkylglycerone phosphate synthase##AK296239|AGPS|8540|alkylglycerone phosphate synthase##AK316240|AGPS|8540|alkylglycerone phosphate synthase	0.998667	0.250485	CTCF.p2:66:0.250
chr3	42109007	42109152	reg1002087.p2	9.889	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-105520	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-868055	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-868130	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	23754	+	TSC_hg19_v1_chr3_+_42190749 AK294221	81669	+	AL713787 TSC_hg19_v1_chr3_+_42190865	81768	+	BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1	0.991189	0.0	denovo_WM_7:14:0.336	denovo_WM_7:15:0.655
chr1	32394317	32394478	reg1002737.p1	9.888	+	NM_001195100 NM_001195101	-9139	-	BC114430 AK131447 NM_144569 AK091016 AX746730	-112798	-	TSC_hg19_v1_chr1_-_32264318 AK095829	-130076	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	9534	-	TSC_hg19_v1_chr1_-_32403992 NM_080391	9600	-	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	85101	+	NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC114430|SPOCD1|90853|SPOC domain containing 1##AK131447|SPOCD1|90853|SPOC domain containing 1##NM_144569|SPOCD1|90853|SPOC domain containing 1##AK091016|SPOCD1|90853|SPOC domain containing 1##AK095829|SPOCD1|90853|SPOC domain containing 1##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1	0.99751	0.0	
chr20	51812885	51813012	reg1002138.p2	9.887	+	AK302570 NM_001193421	-11127	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-223170	+	BX640770 NM_173485	-224003	+	AF041259 NM_006526	386687	-	TSC_hg19_v1_chr20_-_52210810 AK290350	397851	-	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	874114	-	AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK290350|ZNF217|7764|zinc finger protein 217##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1	0.9981	0.0	
chr5	55376135	55376315	reg1001818.p1	9.886	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-85462	-	NM_001242636 NM_001242639	-227076	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-228956	+	AK123389 NM_024669	152960	-	NM_005921	734674	+	TSC_hg19_v1_chr5_+_56111375 AK307828	735139	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	1.992311	0.0	denovo_WM_7:52:0.230	denovo_WM_7:53:0.230	denovo_WM_7:54:0.230	denovo_WM_7:55:0.230
chr7	113950528	113950651	reg1002143.p1	9.886	+	TSC_hg19_v1_chr7_+_113726599 CR749236	-223986	+	TSC_hg19_v1_chr7_+_113726514 AF454830	-224086	+	TSC_hg19_v1_chr7_+_113726381 AK131266	-224168	+	TSC_hg19_v1_chr7_+_114055117 AY144615 BC018016 NM_001172766 NM_014491 NM_148898 NM_148900	104508	+	AK296957 TSC_hg19_v1_chr7_+_114055213	104603	+	TSC_hg19_v1_chr7_+_114055253 AF493430 AF337817 AF467257 BC126104 BC143866 BC143867	104716	+	CR749236|FOXP2|93986|forkhead box P2##AF454830|FOXP2|93986|forkhead box P2##AK131266|FOXP2|93986|forkhead box P2##AY144615|FOXP2|93986|forkhead box P2##BC018016|FOXP2|93986|forkhead box P2##NM_001172766|FOXP2|93986|forkhead box P2##NM_014491|FOXP2|93986|forkhead box P2##NM_148898|FOXP2|93986|forkhead box P2##NM_148900|FOXP2|93986|forkhead box P2##AK296957|FOXP2|93986|forkhead box P2##AF493430|FOXP2|93986|forkhead box P2##AF337817|FOXP2|93986|forkhead box P2##AF467257|FOXP2|93986|forkhead box P2##BC126104|FOXP2|93986|forkhead box P2##BC143866|FOXP2|93986|forkhead box P2##BC143867|FOXP2|93986|forkhead box P2	0.998336	0.033907	denovo_WM_7:-16:0.427	denovo_WM_7:-17:0.479
chr20	52211373	52211553	reg1001410.p1	9.885	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-664	-	AF041259 NM_006526	-11828	-	AK302570 NM_001193421	-409642	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	475599	-	AK315220 NM_003657	475840	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	579057	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.406253	0.0	
chr3	147806986	147807138	reg1002230.p2	9.885	+	BC104848 BC104850 TSC_hg19_v1_chr3_+_147127864 AB464362	-679200	+	TSC_hg19_v1_chr3_+_147127156 NM_003412	-679891	+	NM_001243256 NM_032153	-682467	-	NM_000685 NM_004835 NM_009585 NM_031850 TSC_hg19_v1_chr3_+_148415688 AK291541 BC068494 BC022447 M87290 S77410 X65699	608625	+	NM_032049	640904	+	NM_001871 M81057 AK313940 AJ224866 BC015338 DQ890547 DQ893706 BT009910	738536	+	BC104848|ZIC1|7545|Zic family member 1##BC104850|ZIC1|7545|Zic family member 1##NM_003412|ZIC1|7545|Zic family member 1##NM_001243256|ZIC4|84107|Zic family member 4##NM_032153|ZIC4|84107|Zic family member 4##NM_000685|AGTR1|185|angiotensin II receptor, type 1##NM_004835|AGTR1|185|angiotensin II receptor, type 1##NM_009585|AGTR1|185|angiotensin II receptor, type 1##NM_031850|AGTR1|185|angiotensin II receptor, type 1##AK291541|AGTR1|185|angiotensin II receptor, type 1##BC068494|AGTR1|185|angiotensin II receptor, type 1##BC022447|AGTR1|185|angiotensin II receptor, type 1##M87290|AGTR1|185|angiotensin II receptor, type 1##S77410|AGTR1|185|angiotensin II receptor, type 1##X65699|AGTR1|185|angiotensin II receptor, type 1##NM_032049|AGTR1|185|angiotensin II receptor, type 1##NM_001871|CPB1|1360|carboxypeptidase B1 (tissue)##M81057|CPB1|1360|carboxypeptidase B1 (tissue)##AK313940|CPB1|1360|carboxypeptidase B1 (tissue)##AJ224866|CPB1|1360|carboxypeptidase B1 (tissue)##BC015338|CPB1|1360|carboxypeptidase B1 (tissue)##DQ890547|CPB1|1360|carboxypeptidase B1 (tissue)##DQ893706|CPB1|1360|carboxypeptidase B1 (tissue)##BT009910|CPB1|1360|carboxypeptidase B1 (tissue)	0.99987	0.0	
chr8	134544010	134544169	reg1002502.p1	9.885	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-234592	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-340759	+	NM_001045556 NM_001045557	-428780	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	40008	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1164705	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1180990	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	1.328636	0.0	
chr16	47148177	47148302	reg1001888.p1	9.884	+	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	-140644	-	CU677459 AF011793 AJ001309 TSC_hg19_v1_chr16_-_47007561	-140717	-	TSC_hg19_v1_chr16_-_47005340 Y13350	-142891	-	AY358718 BC108727 TSC_hg19_v1_chr16_-_47177852 BC098380	29607	-	TSC_hg19_v1_chr16_-_47177902 AK074937 NM_001201477 NM_018092	29683	-	TSC_hg19_v1_chr16_-_47494975 BC006321 DQ893514 DQ896493 AF503339 AK027596	346626	-	AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AJ001309|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##Y13350|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AY358718|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC108727|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC098380|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AK074937|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_001201477|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_018092|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC006321|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ893514|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ896493|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF503339|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK027596|ITFG1|81533|integrin alpha FG-GAP repeat containing 1	0.998364	0.0	denovo_WM_7:43:0.658	denovo_WM_7:44:0.255
chr4	146729159	146729331	reg1002199.p3	9.882	+	NM_001080531	-127890	+	TSC_hg19_v1_chr4_+_146540536 AK126662 NM_172250	-188699	+	U59912 NM_001003688 U54826 AK293055	-325287	+	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	130432	-	BC033879 TSC_hg19_v1_chr4_-_146859976	130723	-	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	367622	+	NM_001080531|C4orf51|646603|chromosome 4 open reading frame 51##AK126662|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##NM_172250|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##U59912|SMAD1|4086|SMAD family member 1##NM_001003688|SMAD1|4086|SMAD family member 1##U54826|SMAD1|4086|SMAD family member 1##AK293055|SMAD1|4086|SMAD family member 1##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	1.091596	0.0	denovo_WM_7:-29:0.287	denovo_WM_7:-30:0.287	denovo_WM_7:-31:0.339
chr3	183724723	183724858	reg1001850.p2	9.877	+	TSC_hg19_v1_chr3_-_183602690 NM_001037639 NM_018622	-122082	-	TSC_hg19_v1_chr3_-_183602669 BC003653	-122112	-	TSC_hg19_v1_chr3_-_183602663 AK024765	-122128	-	TSC_hg19_v1_chr3_-_183735673 BC142670 BC142719 U83661 AF104942 AY754874 AY754875 AY754876 AB209454 BC051358 NM_001023587 NM_005688	10901	-	AY159812 NM_182537	24541	+	NM_001145143	24739	+	NM_001037639|PARL|55486|presenilin associated, rhomboid-like##NM_018622|PARL|55486|presenilin associated, rhomboid-like##BC003653|PARL|55486|presenilin associated, rhomboid-like##AK024765|PARL|55486|presenilin associated, rhomboid-like##BC142670|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##BC142719|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##U83661|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AF104942|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754874|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754875|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754876|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AB209454|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##BC051358|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##NM_001023587|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##NM_005688|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY159812|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D##NM_182537|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D##NM_001145143|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D	0.999582	0.0	
chr6	143257202	143257343	reg1002625.p1	9.876	+	TSC_hg19_v1_chr6_+_142623443 BX640873	-633866	+	TSC_hg19_v1_chr6_+_142623145 BC075798 NM_001032394 NM_001032395 NM_020455 NM_198569 AF216967 AB183546 AB183547 AB183548 AB183549 AK307543 AK122617 BX648315	-634203	+	TSC_hg19_v1_chr6_+_142510627 BC013217	-746643	+	TSC_hg19_v1_chr6_-_143266314 CR936782 NM_006734	9056	-	TSC_hg19_v1_chr6_+_143382007 AK298533 AK222475 NM_016108	124723	+	BC009559 TSC_hg19_v1_chr6_+_143382031 AF153605 AK001347 BX640703	124764	+	BX640873|GPR126|57211|G protein-coupled receptor 126##BC075798|GPR126|57211|G protein-coupled receptor 126##NM_001032394|GPR126|57211|G protein-coupled receptor 126##NM_001032395|GPR126|57211|G protein-coupled receptor 126##NM_020455|GPR126|57211|G protein-coupled receptor 126##NM_198569|GPR126|57211|G protein-coupled receptor 126##AF216967|GPR126|57211|G protein-coupled receptor 126##AB183546|GPR126|57211|G protein-coupled receptor 126##AB183547|GPR126|57211|G protein-coupled receptor 126##AB183548|GPR126|57211|G protein-coupled receptor 126##AB183549|GPR126|57211|G protein-coupled receptor 126##AK307543|GPR126|57211|G protein-coupled receptor 126##AK122617|GPR126|57211|G protein-coupled receptor 126##BX648315|GPR126|57211|G protein-coupled receptor 126##BC013217|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##CR936782|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##NM_006734|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##AK298533|AIG1|51390|androgen-induced 1##AK222475|AIG1|51390|androgen-induced 1##NM_016108|AIG1|51390|androgen-induced 1##BC009559|AIG1|51390|androgen-induced 1##AF153605|AIG1|51390|androgen-induced 1##AK001347|AIG1|51390|androgen-induced 1##BX640703|AIG1|51390|androgen-induced 1	0.94644	0.0	denovo_WM_7:-15:0.321	denovo_WM_7:-16:0.594
chr1	20404789	20404939	reg1002427.p1	9.874	+	TSC_hg19_v1_chr1_+_20396654 NM_000929 BC036792 U03090	-8120	+	BC005919 NM_000300 NM_001161727 NM_001161728	-97945	-	M22430 AK291302 NM_001161729	-98742	-	AB590095 AM392918 AM392954 AM392977 AM393597 AM393824 BC025706 NM_012400 AF112982 AY358606 AK290406 AF188625 AK310156 AK311903 AK301396	41160	-	AK093645 AX748240 BX647458 NM_022819 AB528809	61004	+	TSC_hg19_v1_chr1_+_20480706 BC041651	75899	+	NM_000929|PLA2G5|5322|phospholipase A2, group V##BC036792|PLA2G5|5322|phospholipase A2, group V##U03090|PLA2G5|5322|phospholipase A2, group V##BC005919|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_000300|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161727|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161728|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##M22430|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##AK291302|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161729|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##AM392918|PLA2G2D|26279|phospholipase A2, group IID##AM392954|PLA2G2D|26279|phospholipase A2, group IID##AM392977|PLA2G2D|26279|phospholipase A2, group IID##AM393597|PLA2G2D|26279|phospholipase A2, group IID##AM393824|PLA2G2D|26279|phospholipase A2, group IID##BC025706|PLA2G2D|26279|phospholipase A2, group IID##NM_012400|PLA2G2D|26279|phospholipase A2, group IID##AF112982|PLA2G2D|26279|phospholipase A2, group IID##AY358606|PLA2G2D|26279|phospholipase A2, group IID##AK290406|PLA2G2D|26279|phospholipase A2, group IID##AF188625|PLA2G2D|26279|phospholipase A2, group IID##AK310156|PLA2G2D|26279|phospholipase A2, group IID##AK311903|PLA2G2D|26279|phospholipase A2, group IID##AK301396|PLA2G2D|26279|phospholipase A2, group IID##AK093645|PLA2G2F|64600|phospholipase A2, group IIF##BX647458|PLA2G2F|64600|phospholipase A2, group IIF##NM_022819|PLA2G2F|64600|phospholipase A2, group IIF	1.042838	0.0	denovo_WM_7:-1:0.442	denovo_WM_7:-2:0.442
chr9	125997835	125997978	reg1002356.p4	9.873	+	TSC_hg19_v1_chr9_-_125941308 BC002693	-56586	-	TSC_hg19_v1_chr9_-_125874882 AK025814	-123007	-	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-201061	+	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	32914	-	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	32982	-	NM_173689 AK123000 DQ426866 AY720432	120587	+	BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)	2.040709	0.0	denovo_WM_7:-17:0.444	denovo_WM_7:-18:0.296	denovo_WM_7:-33:0.324	denovo_WM_7:-34:0.471	denovo_WM_7:-107:0.235
chr16	89126618	89126798	reg1001775.p1	9.866	+	TSC_hg19_v1_chr16_-_89119364 AK055272	-7339	-	AB527670 EU446890 BC047019 AK314766 AB010419 BC062624 NM_005187 TSC_hg19_v1_chr16_-_89043569	-83305	-	AB010420 NM_175931	-119102	-	NM_001127214 NM_001243279 NM_174917 TSC_hg19_v1_chr16_+_89160259	33529	+	TSC_hg19_v1_chr16_+_89160285 BC028399 AK290963 BC064609 BC072391 AK075499	33599	+	TSC_hg19_v1_chr16_+_89213949 AK090408	87238	+	EU446890|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##BC047019|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AK314766|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AB010419|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##BC062624|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_005187|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AB010420|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_175931|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_001127214|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001243279|ACSF3|197322|acyl-CoA synthetase family member 3##NM_174917|ACSF3|197322|acyl-CoA synthetase family member 3##BC028399|ACSF3|197322|acyl-CoA synthetase family member 3##AK290963|ACSF3|197322|acyl-CoA synthetase family member 3##BC064609|ACSF3|197322|acyl-CoA synthetase family member 3##BC072391|ACSF3|197322|acyl-CoA synthetase family member 3##AK075499|ACSF3|197322|acyl-CoA synthetase family member 3	0.997103	0.0	denovo_WM_7:-18:0.313	denovo_WM_7:-19:0.313	denovo_WM_7:-20:0.313
chr7	6146287	6146463	reg1002455.p2	9.866	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-1777	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-1832	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-47528	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	165856	-	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	242135	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	267852	+	AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.997731	0.0	denovo_WM_7:-2:0.388	denovo_WM_7:-4:0.389
chr3	118529009	118529188	reg1002241.p2	9.865	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-2364725	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-2364767	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-3186679	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	224435	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	224585	-	AK097667 NM_152538 AK292387	335799	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	1.976332	0.0	denovo_WM_7:5:0.250	denovo_WM_7:6:0.743	denovo_WM_7:-15:0.492	denovo_WM_7:-16:0.492
chr9	35071204	35071350	reg1002172.p1	9.864	+	NM_001040410 NM_203299 BC045643 AK097595 AK302123	-29035	+	NM_001040411 NM_001040412	-30176	+	AF088982 TSC_hg19_v1_chr9_+_34990719	-80559	+	BC121794 BC122550 BC110913 TSC_hg19_v1_chr9_-_35072566 AF100752	1280	-	TSC_hg19_v1_chr9_-_35072623 BC096751 AK312310 BC012195 BC017171 BC021055	1339	-	TSC_hg19_v1_chr9_-_35072646 NM_007126	1413	-	NM_001040410|C9orf131|138724|chromosome 9 open reading frame 131##NM_203299|C9orf131|138724|chromosome 9 open reading frame 131##BC045643|C9orf131|138724|chromosome 9 open reading frame 131##AK097595|C9orf131|138724|chromosome 9 open reading frame 131##AK302123|C9orf131|138724|chromosome 9 open reading frame 131##NM_001040411|C9orf131|138724|chromosome 9 open reading frame 131##NM_001040412|C9orf131|138724|chromosome 9 open reading frame 131##AF088982|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##BC121794|VCP|7415|valosin containing protein##BC122550|VCP|7415|valosin containing protein##BC110913|VCP|7415|valosin containing protein##AF100752|VCP|7415|valosin containing protein##BC096751|VCP|7415|valosin containing protein##AK312310|VCP|7415|valosin containing protein##BC012195|VCP|7415|valosin containing protein##BC017171|VCP|7415|valosin containing protein##NM_007126|VCP|7415|valosin containing protein	1.968097	0.0	denovo_WM_7:19:0.645	denovo_WM_7:20:0.267	denovo_WM_7:34:0.329	denovo_WM_7:35:0.595
chr10	12349610	12349748	reg1002046.p1	9.862	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-111453	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-111480	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-111497	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	41896	+	TSC_hg19_v1_chr10_+_12391709 BC035745	42038	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	42098	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	1.935566	0.0	denovo_WM_7:38:0.587	denovo_WM_7:-83:0.770
chr4	26320601	26320751	reg1002144.p1	9.860	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-404812	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-456122	-	NM_001177999 AK314514	-662586	+	L07875 BC020780 NM_005349 NM_203283	643	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	1633	+	TSC_hg19_v1_chr4_+_26322635 AK302230	1960	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	1.77464	0.0	denovo_WM_7:-34:0.789	denovo_WM_7:-49:0.806
chr7	2338854	2338996	reg1002288.p2	9.860	+	BC065367 AB025238 AB025239 AB025242 NM_198953 NM_198954 BC022818 BC040144 CU677071	-56392	+	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	-57050	+	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	-57092	-	TSC_hg19_v1_chr7_-_2354018 BC007785	15099	-	TSC_hg19_v1_chr7_-_2354077 CU692368 DQ892508 DQ895722 AK074544 AF121858 AK315670 BC021565 NM_013321	15149	-	TSC_hg19_v1_chr7_+_2394488 NM_001037283 NM_003751 AK302058	55537	+	BC065367|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025238|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025239|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025242|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198953|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198954|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC022818|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC040144|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC007785|SNX8|29886|sorting nexin 8##DQ892508|SNX8|29886|sorting nexin 8##DQ895722|SNX8|29886|sorting nexin 8##AK074544|SNX8|29886|sorting nexin 8##AF121858|SNX8|29886|sorting nexin 8##AK315670|SNX8|29886|sorting nexin 8##BC021565|SNX8|29886|sorting nexin 8##NM_013321|SNX8|29886|sorting nexin 8##NM_001037283|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##NM_003751|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK302058|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B	0.013811	0.0	
chr8	126620001	126620181	reg1000212.p1	9.858	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-177512	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-515994	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-516034	-	TSC_hg19_v1_chr8_-_126963395 BX648371	343322	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	950464	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	950633	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	0.784897	0.0	
chr2	70314251	70314431	reg1000201.p1	9.857	+	TSC_hg19_v1_chr2_-_70314146 BC040598	-228	-	TSC_hg19_v1_chr2_-_70313405 AK056822	-933	-	AK055994 NM_152792	-124945	-	TSC_hg19_v1_chr2_+_70314613 NM_006196	253	+	TSC_hg19_v1_chr2_+_70314696 U24223	362	+	TSC_hg19_v1_chr2_+_70314716 AK314225	377	+	BC040598|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##AK056822|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##AK055994|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_152792|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_006196|PCBP1|5093|poly(rC) binding protein 1##U24223|PCBP1|5093|poly(rC) binding protein 1##AK314225|PCBP1|5093|poly(rC) binding protein 1	0.0	0.0	
chr16	12152636	12152725	reg1001608.p1	9.856	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-82107	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-93596	+	NM_001130007	-142162	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	744971	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	745039	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	842788	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	1.917825	0.0	denovo_WM_7:-3:0.907	denovo_WM_7:-18:0.906
chr6	24744341	24744468	reg1001816.p1	9.856	+	AK022681 AB075502 AL136632 NM_030939	-25060	-	NM_001160094 NM_018473 TSC_hg19_v1_chr6_+_24667281 AF155649 AF220186 AK000508 AF274952 AK309738 BC000894	-77068	+	TSC_hg19_v1_chr6_-_24667128 AK298699	-77182	-	TSC_hg19_v1_chr6_+_24775164 AK021685 NM_001251989 NM_001251990 NM_015895 AK315743 BC005389 BC005185	30790	+	NM_001251991	31236	+	U49187 AK300138 BC001232 NM_015864	133113	-	AK022681|C6orf62|81688|chromosome 6 open reading frame 62##AB075502|C6orf62|81688|chromosome 6 open reading frame 62##AL136632|C6orf62|81688|chromosome 6 open reading frame 62##NM_030939|C6orf62|81688|chromosome 6 open reading frame 62##NM_001160094|ACOT13|55856|acyl-CoA thioesterase 13##NM_018473|ACOT13|55856|acyl-CoA thioesterase 13##AF155649|ACOT13|55856|acyl-CoA thioesterase 13##AF220186|ACOT13|55856|acyl-CoA thioesterase 13##AK000508|ACOT13|55856|acyl-CoA thioesterase 13##AF274952|ACOT13|55856|acyl-CoA thioesterase 13##AK309738|ACOT13|55856|acyl-CoA thioesterase 13##BC000894|ACOT13|55856|acyl-CoA thioesterase 13##AK298699|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AK021685|GMNN|51053|geminin, DNA replication inhibitor##NM_001251989|GMNN|51053|geminin, DNA replication inhibitor##NM_001251990|GMNN|51053|geminin, DNA replication inhibitor##NM_015895|GMNN|51053|geminin, DNA replication inhibitor##AK315743|GMNN|51053|geminin, DNA replication inhibitor##BC005389|GMNN|51053|geminin, DNA replication inhibitor##BC005185|GMNN|51053|geminin, DNA replication inhibitor##NM_001251991|GMNN|51053|geminin, DNA replication inhibitor##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B	0.999338	0.0	
chr12	70711599	70711764	reg1002225.p2	9.855	+	AK307479 NM_001199303 AK095789	-74170	+	AK000662 TSC_hg19_v1_chr12_+_70637212 AF044215 BC011826 BC002597 AF161480	-74446	+	NM_014515 TSC_hg19_v1_chr12_+_70636809 AK315715 NM_001199302	-74890	+	TSC_hg19_v1_chr12_+_70760230 NM_014505 AF160967 BC042446 BC050621 AF215891 AF207992	48585	+	TSC_hg19_v1_chr12_+_70861858 BC031864	150187	+	BC101679 BC113463 BC143356 BC143360 NM_001206971 NM_001206972 NM_002837 X54131	291941	-	AK307479|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199303|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK095789|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK000662|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AF044215|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC011826|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC002597|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AF161480|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_014515|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK315715|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199302|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_014505|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF160967|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC042446|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC050621|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF215891|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF207992|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC101679|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC113463|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC143356|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC143360|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001206971|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001206972|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_002837|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##X54131|PTPRB|5787|protein tyrosine phosphatase, receptor type, B	0.944165	0.0	denovo_WM_7:-13:0.335	denovo_WM_7:-16:0.426
chr1	17393627	17393769	reg1002136.p1	9.854	+	DQ403007 TSC_hg19_v1_chr1_-_17380528 AK312056 U17248 BC007840 NM_003000	-13123	-	AL354615 AY461712 TSC_hg19_v1_chr1_-_17338424 BC030267 AK290210 NM_001141973 NM_001141974 NM_022089	-55315	-	AK301655 NM_001135247 NM_017459	-85622	-	AB587350 AB023211 AB030176 BC009701 TSC_hg19_v1_chr1_-_17445947 AK295783 NM_007365	52209	-	AK314644 AK026652 AK225541 NM_013358 AB033768 BC130574 BC136402 HQ258487	137967	+	AB026831 NM_016233 BC109091 BC041592 BC109092	181901	+	DQ403007|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AK312056|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##U17248|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##BC007840|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##NM_003000|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AL354615|ATP13A2|23400|ATPase type 13A2##AY461712|ATP13A2|23400|ATPase type 13A2##BC030267|ATP13A2|23400|ATPase type 13A2##AK290210|ATP13A2|23400|ATPase type 13A2##NM_001141973|ATP13A2|23400|ATPase type 13A2##NM_001141974|ATP13A2|23400|ATPase type 13A2##NM_022089|ATP13A2|23400|ATPase type 13A2##AK301655|MFAP2|4237|microfibrillar-associated protein 2##NM_001135247|MFAP2|4237|microfibrillar-associated protein 2##NM_017459|MFAP2|4237|microfibrillar-associated protein 2##AB023211|PADI2|11240|peptidyl arginine deiminase, type II##AB030176|PADI2|11240|peptidyl arginine deiminase, type II##BC009701|PADI2|11240|peptidyl arginine deiminase, type II##AK295783|PADI2|11240|peptidyl arginine deiminase, type II##NM_007365|PADI2|11240|peptidyl arginine deiminase, type II##AK314644|PADI1|29943|peptidyl arginine deiminase, type I##AK026652|PADI1|29943|peptidyl arginine deiminase, type I##AK225541|PADI1|29943|peptidyl arginine deiminase, type I##NM_013358|PADI1|29943|peptidyl arginine deiminase, type I##AB033768|PADI1|29943|peptidyl arginine deiminase, type I##BC130574|PADI1|29943|peptidyl arginine deiminase, type I##BC136402|PADI1|29943|peptidyl arginine deiminase, type I##HQ258487|PADI1|29943|peptidyl arginine deiminase, type I##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III	1.024945	0.0	denovo_WM_7:8:0.739
chr12	22784932	22785068	reg1002800.p1	9.852	+	TSC_hg19_v1_chr12_+_22778130 CU688188 BC006111 AL137750 AK074425	-6853	+	AF207600 TSC_hg19_v1_chr12_+_22778077 BC066907 NM_001039481 NM_018638	-6957	+	TSC_hg19_v1_chr12_-_22697446 AY166851 NM_014802 AK310753	-87534	-	NM_178010 AK098610 AK223536	952526	-	AK074317 TSC_hg19_v1_chr12_-_24102605 BC065532 AB081589 NM_006940	1317602	-	TSC_hg19_v1_chr12_-_24103855 AK299607 AK096569	1318854	-	BC006111|ETNK1|55500|ethanolamine kinase 1##AL137750|ETNK1|55500|ethanolamine kinase 1##AK074425|ETNK1|55500|ethanolamine kinase 1##AF207600|ETNK1|55500|ethanolamine kinase 1##BC066907|ETNK1|55500|ethanolamine kinase 1##NM_001039481|ETNK1|55500|ethanolamine kinase 1##NM_018638|ETNK1|55500|ethanolamine kinase 1##AY166851|KIAA0528|9847|KIAA0528##NM_014802|KIAA0528|9847|KIAA0528##AK310753|KIAA0528|9847|KIAA0528##NM_178010|SOX5|6660|SRY (sex determining region Y)-box 5##AK098610|SOX5|6660|SRY (sex determining region Y)-box 5##AK223536|SOX5|6660|SRY (sex determining region Y)-box 5##AK074317|SOX5|6660|SRY (sex determining region Y)-box 5##BC065532|SOX5|6660|SRY (sex determining region Y)-box 5##AB081589|SOX5|6660|SRY (sex determining region Y)-box 5##NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5##AK299607|SOX5|6660|SRY (sex determining region Y)-box 5##AK096569|SOX5|6660|SRY (sex determining region Y)-box 5	0.998519	0.872611	CTCF.p2:-8:0.873	denovo_WM_7:20:0.965
chr1	152626651	152626783	reg1002348.p1	9.851	+	AB528786 BC120933 BC120934 NM_178431	-31139	-	NM_178433	-40431	+	BC130365 BC130367 NM_178434 HQ258028	-53545	+	NM_178430 BC130603 BC130605	9161	+	NM_178429 BC125197	21063	+	AF086289 NM_014357 AF005080 BC117235 BC117237	31885	+	AB528786|LCE3A|353142|late cornified envelope 3A##BC120933|LCE3A|353142|late cornified envelope 3A##BC120934|LCE3A|353142|late cornified envelope 3A##NM_178431|LCE3A|353142|late cornified envelope 3A##NM_178433|LCE3B|353143|late cornified envelope 3B##BC130365|LCE3C|353144|late cornified envelope 3C##BC130367|LCE3C|353144|late cornified envelope 3C##NM_178434|LCE3C|353144|late cornified envelope 3C##HQ258028|LCE3C|353144|late cornified envelope 3C##NM_178430|LCE2D|353141|late cornified envelope 2D##BC130603|LCE2D|353141|late cornified envelope 2D##BC130605|LCE2D|353141|late cornified envelope 2D##NM_178429|LCE2C|353140|late cornified envelope 2C##AF086289|LCE2B|26239|late cornified envelope 2B##NM_014357|LCE2B|26239|late cornified envelope 2B##AF005080|LCE2B|26239|late cornified envelope 2B##BC117235|LCE2B|26239|late cornified envelope 2B##BC117237|LCE2B|26239|late cornified envelope 2B	0.996364	0.941896	CTCF.p2:-34:0.942
chr1	114300859	114301039	reg1002238.p1	9.847	+	BC130409 BC144144 NM_001142782 NM_152900	-367475	+	TSC_hg19_v1_chr1_+_113615865 BC117368 BC117370 AB527394	-685003	+	TSC_hg19_v1_chr1_+_113615809 AK291031 CR936669 AB018349 NM_014813 AL161998	-685134	+	TSC_hg19_v1_chr1_-_114301772 NM_006608	822	-	TSC_hg19_v1_chr1_-_114302096 BC002447	1191	-	TSC_hg19_v1_chr1_-_114354898 CU693140 CR627402	53932	-	BC130409|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##BC144144|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_001142782|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_152900|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##BC117368|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC117370|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AK291031|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##CR936669|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AB018349|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##NM_014813|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AL161998|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##NM_006608|PHTF1|10745|putative homeodomain transcription factor 1##BC002447|PHTF1|10745|putative homeodomain transcription factor 1##CR627402|RSBN1|54665|round spermatid basic protein 1	1.44302	0.0	denovo_WM_7:50:0.446
chr8	134440884	134441037	reg1002162.p1	9.847	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-131463	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-237630	+	NM_001045556 NM_001045557	-325651	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	143137	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1267834	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1284119	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.987354	0.0	denovo_WM_7:-3:0.987
chr10	91127493	91127638	reg1002588.p1	9.846	+	BC040833 AK091558 TSC_hg19_v1_chr10_-_91102477	-25110	-	NM_001031683 AK297137 AF026939 BC001383 BC004977	-35282	+	NM_001549 AK290427 AF083470 AK312675 U52513 TSC_hg19_v1_chr10_+_91087771	-39879	+	BX647300 NM_001010987 BC150189 BC137368 BC137369	10262	+	NM_001548 BC007091 AK314588 AK308688 X03557	24798	+	TSC_hg19_v1_chr10_+_91174324 NM_012420 BC025786	46778	+	AK091558|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_001031683|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK297137|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF026939|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC001383|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC004977|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001549|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK290427|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF083470|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK312675|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##U52513|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BX647300|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##NM_001010987|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC150189|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC137368|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC137369|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##NM_001548|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##BC007091|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##AK314588|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##AK308688|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##X03557|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##NM_012420|IFIT5|24138|interferon-induced protein with tetratricopeptide repeats 5##BC025786|IFIT5|24138|interferon-induced protein with tetratricopeptide repeats 5	0.096871	0.0	
chr2	196514999	196515140	reg1002021.p1	9.845	+	BC008973 AB017269 AY358907 AK074632 AL157430 AF179274 NM_016192 TSC_hg19_v1_chr2_-_193059657 AF242222 AK222691 AK315376	-3455440	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	-3455755	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	-3803098	-	BC029413 NM_001127257 CR749813	6506	+	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	6839	+	AB463018 AF327442 AK094515 NM_018897 AB023161	418426	-	BC008973|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB017269|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AY358907|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074632|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AL157430|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF179274|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##NM_016192|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF242222|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK222691|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK315376|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7	1.052157	0.0	denovo_WM_7:-54:0.414	denovo_WM_7:-55:0.438
chr8	123931187	123931331	reg1001960.p1	9.845	+	TSC_hg19_v1_chr8_+_123794108 AB020661	-137156	+	BC042145 TSC_hg19_v1_chr8_+_123794000	-137265	+	TSC_hg19_v1_chr8_+_123793897 NM_014943	-137348	+	TSC_hg19_v1_chr8_+_123963651 EU446694 AB083653	32440	+	BC002457 TSC_hg19_v1_chr8_-_124054522	123248	-	AY358818 TSC_hg19_v1_chr8_-_124054540 AK303826	123281	-	AB020661|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##EU446694|ZHX2|22882|zinc fingers and homeoboxes 2##AB083653|ZHX2|22882|zinc fingers and homeoboxes 2##BC002457|DERL1|79139|Der1-like domain family, member 1##AY358818|DERL1|79139|Der1-like domain family, member 1##AK303826|DERL1|79139|Der1-like domain family, member 1	0.994896	0.0	denovo_WM_7:-62:0.332	denovo_WM_7:-63:0.332	denovo_WM_7:-64:0.332
chr5	128461711	128461877	reg1002271.p1	9.844	+	TSC_hg19_v1_chr5_+_128430443 AF151869 NM_016048 AK025787 BC014105 DQ895427 BC008367	-31369	+	TSC_hg19_v1_chr5_+_128301169 BX537383 NM_014031 NM_001017372 AK313456 AL833117	-160597	+	TSC_hg19_v1_chr5_+_128300789 BC041945	-160991	+	TSC_hg19_v1_chr5_+_128796007 AJ311904 NM_133638	334259	+	BC137325 AB086062 AB175496 AJ632296 AJ862728 NM_175856	778693	+	CR457048 TSC_hg19_v1_chr5_-_130500958 BC001287 U27143 AK026557	2039137	-	AF151869|ISOC1|51015|isochorismatase domain containing 1##NM_016048|ISOC1|51015|isochorismatase domain containing 1##AK025787|ISOC1|51015|isochorismatase domain containing 1##BC014105|ISOC1|51015|isochorismatase domain containing 1##DQ895427|ISOC1|51015|isochorismatase domain containing 1##BC008367|ISOC1|51015|isochorismatase domain containing 1##BX537383|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##NM_014031|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##NM_001017372|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##AK313456|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##AL833117|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##BC041945|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##AJ311904|ADAMTS19|171019|ADAM metallopeptidase with thrombospondin type 1 motif, 19##NM_133638|ADAMTS19|171019|ADAM metallopeptidase with thrombospondin type 1 motif, 19##BC137325|CHSY3|337876|chondroitin sulfate synthase 3##AB086062|CHSY3|337876|chondroitin sulfate synthase 3##AB175496|CHSY3|337876|chondroitin sulfate synthase 3##AJ632296|CHSY3|337876|chondroitin sulfate synthase 3##AJ862728|CHSY3|337876|chondroitin sulfate synthase 3##NM_175856|CHSY3|337876|chondroitin sulfate synthase 3##CR457048|HINT1|3094|histidine triad nucleotide binding protein 1##BC001287|HINT1|3094|histidine triad nucleotide binding protein 1##U27143|HINT1|3094|histidine triad nucleotide binding protein 1##AK026557|HINT1|3094|histidine triad nucleotide binding protein 1	0.988175	0.0	denovo_WM_7:27:0.527	denovo_WM_7:28:0.204	denovo_WM_7:30:0.204
chr5	134389154	134389282	reg1002285.p1	9.838	+	TSC_hg19_v1_chr5_-_134369891 BC009412 AK290635 NM_002653	-19309	-	CU679351 AB463996 EU446647 TSC_hg19_v1_chr5_-_134369629 U70370	-19593	-	BC110384 NM_178019 AK292427 AF432876 BC101692	-85603	+	TSC_hg19_v1_chr5_-_134734798 AF041483	345596	-	TSC_hg19_v1_chr5_-_134734891 BC095406	345670	-	TSC_hg19_v1_chr5_-_134734920 AK023409 AK296014 NM_001040158 NM_138609 NM_138610	345703	-	BC009412|PITX1|5307|paired-like homeodomain 1##AK290635|PITX1|5307|paired-like homeodomain 1##NM_002653|PITX1|5307|paired-like homeodomain 1##EU446647|PITX1|5307|paired-like homeodomain 1##U70370|PITX1|5307|paired-like homeodomain 1##BC110384|CATSPER3|347732|cation channel, sperm associated 3##NM_178019|CATSPER3|347732|cation channel, sperm associated 3##AK292427|CATSPER3|347732|cation channel, sperm associated 3##AF432876|CATSPER3|347732|cation channel, sperm associated 3##BC101692|CATSPER3|347732|cation channel, sperm associated 3##AF041483|H2AFY|9555|H2A histone family, member Y##BC095406|H2AFY|9555|H2A histone family, member Y##AK023409|H2AFY|9555|H2A histone family, member Y##AK296014|H2AFY|9555|H2A histone family, member Y##NM_001040158|H2AFY|9555|H2A histone family, member Y##NM_138609|H2AFY|9555|H2A histone family, member Y##NM_138610|H2AFY|9555|H2A histone family, member Y	0.139428	0.0	
chr5	61874538	61874696	reg1002248.p1	9.838	+	AK302781 NM_001134779	-159907	+	TSC_hg19_v1_chr5_+_61708589 NM_016338 AK001696 BC033776	-165993	+	TSC_hg19_v1_chr5_-_61699730 BC002841 BC017885 NM_014473 AK292723	-174858	-	AK123022 NM_181506 BX649157 AY358733 BC110838 AY280614	21	+	AF498978 BC069159 NM_000524 AB464441 BC136263 TSC_hg19_v1_chr5_-_63257719 AK291429 AK311460	1383045	-	AK314187 TSC_hg19_v1_chr5_-_63258084	1383405	-	AK302781|IPO11|51194|importin 11##NM_001134779|IPO11|51194|importin 11##NM_016338|IPO11|51194|importin 11##AK001696|IPO11|51194|importin 11##BC033776|IPO11|51194|importin 11##BC002841|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##BC017885|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##NM_014473|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##AK292723|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##AK123022|LRRC70|100130733|leucine rich repeat containing 70##NM_181506|LRRC70|100130733|leucine rich repeat containing 70##AY358733|LRRC70|100130733|leucine rich repeat containing 70##BC110838|LRRC70|100130733|leucine rich repeat containing 70##AY280614|LRRC70|100130733|leucine rich repeat containing 70##AF498978|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC069159|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##NM_000524|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC136263|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK291429|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK314187|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A	0.999734	0.0	denovo_WM_7:10:0.230	denovo_WM_7:11:0.230	denovo_WM_7:12:0.230	denovo_WM_7:13:0.230
chr10	112625586	112625716	reg1002559.p1	9.836	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-221522	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-281536	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-298159	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	5961	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	6063	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	53045	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	0.0	0.0	
chr12	130532015	130532110	reg1001650.p1	9.836	+	BC114626 BC114936 NM_133448 AB061814	-143851	-	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	-1193975	+	BC043528 TSC_hg19_v1_chr12_+_129337985	-1194078	+	AK056047 TSC_hg19_v1_chr12_-_130646911	114794	-	TSC_hg19_v1_chr12_+_130647008 BC070037 NM_007197	114948	+	NM_001190971 NM_004764	290370	+	BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056047|FLJ31485|440119|uncharacterized LOC440119##BC070037|FZD10|11211|frizzled family receptor 10##NM_007197|FZD10|11211|frizzled family receptor 10##NM_001190971|PIWIL1|9271|piwi-like 1 (Drosophila)##NM_004764|PIWIL1|9271|piwi-like 1 (Drosophila)	1.925916	0.759378	denovo_WM_7:-1:0.935	CTCF.p2:-35:0.759	denovo_WM_7:-72:0.583
chr16	11188861	11189015	reg1002682.p1	9.836	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-150495	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-152703	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-152772	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	161112	-	X63758 BC096135 BC096136 BC096137 NM_005425	174200	-	NM_021247	178513	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.993995	0.0	denovo_WM_7:15:0.718
chr2	122407248	122407428	reg1000418.p2	9.834	+	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	-316	-	AK297259 TSC_hg19_v1_chr2_-_122247924	-159419	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-248183	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	307	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	87127	-	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	105899	+	BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin	0.991458	0.0	denovo_WM_7:-5:0.968
chr4	2854260	2854440	reg1001994.p1	9.833	+	TSC_hg19_v1_chr4_+_2845627 AH004561 S70310 BC013393 AK309186	-8684	+	TSC_hg19_v1_chr4_+_2845589 NM_001119 NM_014189 NM_014190 NM_176801	-8771	+	AB000462 AB000463 NM_003023	-33810	+	AK025413 TSC_hg19_v1_chr4_+_2883766	29351	+	CU677155 EU176393 EU176739 L11669 TSC_hg19_v1_chr4_-_2935840	81397	-	TSC_hg19_v1_chr4_-_2935854 NM_001120	81557	-	S70310|ADD1|118|adducin 1 (alpha)##BC013393|ADD1|118|adducin 1 (alpha)##AK309186|ADD1|118|adducin 1 (alpha)##NM_001119|ADD1|118|adducin 1 (alpha)##NM_014189|ADD1|118|adducin 1 (alpha)##NM_014190|ADD1|118|adducin 1 (alpha)##NM_176801|ADD1|118|adducin 1 (alpha)##AB000462|SH3BP2|6452|SH3-domain binding protein 2##AB000463|SH3BP2|6452|SH3-domain binding protein 2##NM_003023|SH3BP2|6452|SH3-domain binding protein 2##AK025413|ADD1|118|adducin 1 (alpha)##EU176393|MFSD10|10227|major facilitator superfamily domain containing 10##EU176739|MFSD10|10227|major facilitator superfamily domain containing 10##L11669|MFSD10|10227|major facilitator superfamily domain containing 10##NM_001120|MFSD10|10227|major facilitator superfamily domain containing 10	0.992639	0.0	
chr16	72638323	72638503	reg1002252.p1	9.832	+	AK122925 NM_001160213	-432065	-	AL136795 AK315004 BC028423 AK093285 AX748032 NM_031293	-432370	-	NM_001142318	-510199	-	TSC_hg19_v1_chr16_+_72699031 AK021563	60651	+	TSC_hg19_v1_chr16_-_72991733 BC029653	353292	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	443808	-	AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AL136795|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK315004|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##BC028423|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK093285|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_031293|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001142318|TXNL4B|54957|thioredoxin-like 4B##BC029653|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3	1.673523	0.0	denovo_WM_7:48:0.675
chr1	234380311	234380473	reg1002389.p2	9.826	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-30386	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	-339780	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	-630473	+	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	128980	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	234468	-	TSC_hg19_v1_chr1_-_234743489 BC020516	363134	-	BC037878|SLC35F3|148641|solute carrier family 35, member F3##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.995693	0.0	denovo_WM_7:-20:0.983
chr14	74254800	74254937	reg1001727.p2	9.826	+	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	-949	-	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-27903	-	BC015668 TSC_hg19_v1_chr14_-_74226640	-28230	-	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	63721	+	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	98450	+	BC050683 AK298520 TSC_hg19_v1_chr14_+_74353561 AK315206 AK223261 AK293350 AK298307 AK303834 AK304609 AK310031 AK301382 AK309957 BC000330 BC004357 U90919	98678	+	NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##BC015668|C14orf43|91748|chromosome 14 open reading frame 43##NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410##BC050683|ZNF410|57862|zinc finger protein 410##AK298520|ZNF410|57862|zinc finger protein 410##AK315206|ZNF410|57862|zinc finger protein 410##AK223261|ZNF410|57862|zinc finger protein 410##AK293350|ZNF410|57862|zinc finger protein 410##AK298307|ZNF410|57862|zinc finger protein 410##AK303834|ZNF410|57862|zinc finger protein 410##AK304609|ZNF410|57862|zinc finger protein 410##AK310031|ZNF410|57862|zinc finger protein 410##AK301382|ZNF410|57862|zinc finger protein 410##AK309957|ZNF410|57862|zinc finger protein 410##BC000330|ZNF410|57862|zinc finger protein 410##BC004357|ZNF410|57862|zinc finger protein 410##U90919|ZNF410|57862|zinc finger protein 410	0.99752	0.0	denovo_WM_7:-2:0.771
chr19	7398923	7399076	reg1002334.p2	9.826	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-105039	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-299448	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-329284	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	61008	+	TSC_hg19_v1_chr19_+_7460061 AB011093	61078	+	AK127045 NM_001130955	105574	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.981085	0.0	denovo_WM_7:15:0.527	denovo_WM_7:16:0.470	denovo_WM_7:63:0.983
chr3	53589390	53589538	reg1001990.p1	9.822	+	NM_000720 NM_001128839 NM_001128840 M83566 EU363339	-60353	+	TSC_hg19_v1_chr3_+_53528709 M76558	-60805	+	TSC_hg19_v1_chr3_-_53381571 AB590177 CU675659 DQ893260 DQ896589 BC007439 AK295205 AB075507 AK001969 AY146651 AJ275986 NM_018403	-207871	-	TSC_hg19_v1_chr3_-_53880427 NM_018397	290955	-	TSC_hg19_v1_chr3_+_53880576 NM_018725	291108	+	TSC_hg19_v1_chr3_+_53880594 AK307749	291131	+	NM_000720|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128839|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128840|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M83566|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##EU363339|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M76558|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##DQ893260|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##DQ896589|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##BC007439|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK295205|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AB075507|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK001969|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AY146651|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AJ275986|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018403|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018397|CHDH|55349|choline dehydrogenase##NM_018725|IL17RB|55540|interleukin 17 receptor B##AK307749|IL17RB|55540|interleukin 17 receptor B	0.985359	0.0	
chr4	39355066	39355246	reg1001903.p2	9.822	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	-171061	+	AK289785 NM_015990 NM_199039	-291305	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-308718	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	12796	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	53328	+	TSC_hg19_v1_chr4_+_39408557 BC104871 BC113653 BC143575	53393	+	AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta##BC104871|KLB|152831|klotho beta##BC113653|KLB|152831|klotho beta##BC143575|KLB|152831|klotho beta	0.0	0.0	
chr12	21850902	21851046	reg1002525.p1	9.821	+	TSC_hg19_v1_chr12_-_21810792 NM_002300	-40179	-	TSC_hg19_v1_chr12_-_21810774 AK312328 BC015122	-40201	-	TSC_hg19_v1_chr12_-_21810756 BC002362 AY189689	-40214	-	BC000544 AK291821 D50312 NM_004982	76706	-	NM_005691 NM_020297	238653	-	AK056519 TSC_hg19_v1_chr12_-_22094251 BC033804	243276	-	NM_002300|LDHB|3945|lactate dehydrogenase B##AK312328|LDHB|3945|lactate dehydrogenase B##BC015122|LDHB|3945|lactate dehydrogenase B##BC002362|LDHB|3945|lactate dehydrogenase B##AY189689|LDHB|3945|lactate dehydrogenase B##BC000544|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##AK291821|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##D50312|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##NM_004982|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##NM_005691|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9##NM_020297|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9##AK056519|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9##BC033804|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	0.999596	0.998522	denovo_WM_7:21:0.419	denovo_WM_7:22:0.419	CTCF.p2:-22:0.999
chr3	197457711	197457841	reg1001915.p2	9.821	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-103023	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-157575	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-174934	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	6010	-	AK303462 NM_001011537	18647	+	NM_001145642	18791	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	2.943079	0.0	denovo_WM_7:3:0.661	denovo_WM_7:-11:0.631	denovo_WM_7:-12:0.218	denovo_WM_7:93:0.400	denovo_WM_7:99:0.400
chr14	74552644	74552785	reg1002763.p1	9.820	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	-1046	+	TSC_hg19_v1_chr14_-_74551167 BC032371 NM_005589	-1525	-	AF038011 TSC_hg19_v1_chr14_-_74551122 AF159889 CU678802 DQ892921 DQ893680 EU176729 AK223244 AJ249994 BC004909 AK222687 AF148505 AK312389 AK294243 AK311478	-1599	-	AY336059 NM_182894 BC128153	153482	+	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	216976	-	NM_018228 TSC_hg19_v1_chr14_+_74815173	262455	+	NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##BC032371|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_005589|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF038011|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF159889|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ892921|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ893680|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##EU176729|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK223244|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AJ249994|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##BC004909|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK222687|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF148505|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK312389|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK294243|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK311478|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_018228|VRTN|55237|vertebrae development homolog (pig)	0.07506	0.0	
chr14	76005675	76005855	reg1001809.p1	9.820	+	TSC_hg19_v1_chr14_+_75988840 D42106	-16913	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	-16975	+	BC051303 NM_001135049	-106929	+	NM_017791 AY260572 AY260577 BC019087 AK000378	39200	+	AK297002 NM_001195283	66039	+	AF134159 TSC_hg19_v1_chr14_-_76127220 AK311764 AL136658 AF136971 AF161406 BC002444	121431	-	D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK297002|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_001195283|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AF134159|C14orf1|11161|chromosome 14 open reading frame 1##AK311764|C14orf1|11161|chromosome 14 open reading frame 1##AL136658|C14orf1|11161|chromosome 14 open reading frame 1##AF136971|C14orf1|11161|chromosome 14 open reading frame 1##AF161406|C14orf1|11161|chromosome 14 open reading frame 1##BC002444|C14orf1|11161|chromosome 14 open reading frame 1	1.035908	0.0	
chr6_cox_hap2	4054048	4054176	reg1002388.p1	9.816	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999517	0.0	denovo_WM_7:-1:0.463	denovo_WM_7:-2:0.518
chr13	28587052	28587232	reg1001860.p1	9.815	+	NM_001105577	-24369	-	TSC_hg19_v1_chr13_-_28543453 Y13709	-43679	-	TSC_hg19_v1_chr13_-_28543325 BC014461 NM_001265	-43834	-	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	87545	-	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	125524	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	482102	-	NM_001105577|PRHOXNB|646625|parahox cluster neighbor##Y13709|CDX2|1045|caudal type homeobox 2##BC014461|CDX2|1045|caudal type homeobox 2##NM_001265|CDX2|1045|caudal type homeobox 2##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)	0.990314	0.0	denovo_WM_7:-60:0.491	denovo_WM_7:-61:0.286	denovo_WM_7:-62:0.214
chr12	116504542	116504662	reg1002231.p1	9.812	+	TSC_hg19_v1_chr12_-_115121970 AK054604 NM_005996 NM_016569	-1382462	-	AB051068 AF221714 NM_000192 NM_080717 Y09445	-1658384	-	BC027942 NM_181486 TSC_hg19_v1_chr12_-_114843950	-1660678	-	TSC_hg19_v1_chr12_-_116714956 BC130422 AF515599 NM_015335	210348	-	TSC_hg19_v1_chr12_-_116715263 AY338463	210558	-	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	466627	+	AK054604|TBX3|6926|T-box 3##NM_005996|TBX3|6926|T-box 3##NM_016569|TBX3|6926|T-box 3##AB051068|TBX5|6910|T-box 5##AF221714|TBX5|6910|T-box 5##NM_000192|TBX5|6910|T-box 5##NM_080717|TBX5|6910|T-box 5##Y09445|TBX5|6910|T-box 5##BC027942|TBX5|6910|T-box 5##NM_181486|TBX5|6910|T-box 5##BC130422|MED13L|23389|mediator complex subunit 13-like##AF515599|MED13L|23389|mediator complex subunit 13-like##NM_015335|MED13L|23389|mediator complex subunit 13-like##AY338463|MED13L|23389|mediator complex subunit 13-like##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173	0.996124	0.311447	CTCF.p2:17:0.311	denovo_WM_7:-30:0.928
chr21	45340288	45340434	reg1002678.p1	9.812	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-55238	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-55301	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-130876	+	AK300562 NM_001037553	4917	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	91979	+	TSC_hg19_v1_chr21_+_45527202 AK314184	186841	+	NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.15123	0.0	
chr10	13829082	13829211	reg1001646.p1	9.811	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-79457	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-200159	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-200203	+	TSC_hg19_v1_chr10_-_14050453 AK001072	221346	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	543704	-	TSC_hg19_v1_chr10_-_14646259 BC064407	817171	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.0	0.0	
chr14	61969931	61970087	reg1002340.p2	9.810	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-181482	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-221487	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-221815	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	192181	+	FJ790247 NM_001243084	194330	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	259110	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.992596	0.0	denovo_WM_7:10:0.479	denovo_WM_7:11:0.479
chr5	39077202	39077345	reg1002416.p2	9.810	+	TSC_hg19_v1_chr5_-_39074499 AY515854 BC029608 BC137163 BC137164 BC144509 NM_152756	-2776	-	CU688716 DQ891672 DQ894858 TSC_hg19_v1_chr5_-_39074493 AK128358 CR749280	-2788	-	TSC_hg19_v1_chr5_+_38846260 BC125209 BC125210	-230978	+	AF198052 U93049 AF001862 TSC_hg19_v1_chr5_-_39203164	125844	-	BC117449 BC143645 BC015933 BX647195 BX647196 TSC_hg19_v1_chr5_-_39219666 AK130159 AK290403 NM_001465 NM_199335	142356	-	TSC_hg19_v1_chr5_-_39270745 AK297077 NM_001243093	193466	-	AY515854|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC029608|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137163|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137164|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC144509|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##NM_152756|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##DQ891672|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##DQ894858|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##AK128358|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##CR749280|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC125209|OSMR|9180|oncostatin M receptor##BC125210|OSMR|9180|oncostatin M receptor##AF198052|FYB|2533|FYN binding protein##U93049|FYB|2533|FYN binding protein##AF001862|FYB|2533|FYN binding protein##BC117449|FYB|2533|FYN binding protein##BC143645|FYB|2533|FYN binding protein##BC015933|FYB|2533|FYN binding protein##BX647195|FYB|2533|FYN binding protein##BX647196|FYB|2533|FYN binding protein##AK130159|FYB|2533|FYN binding protein##AK290403|FYB|2533|FYN binding protein##NM_001465|FYB|2533|FYN binding protein##NM_199335|FYB|2533|FYN binding protein##AK297077|FYB|2533|FYN binding protein##NM_001243093|FYB|2533|FYN binding protein	0.968886	0.0	denovo_WM_7:13:0.509	denovo_WM_7:14:0.460
chr7	117680796	117680947	reg1002326.p1	9.808	+	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	-167328	-	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	-167390	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	-560833	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	143300	+	NM_019644 AK302407	183863	+	AK307139 AB028967 NM_012281	2232833	+	BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2	0.232848	0.0	denovo_WM_7:19:0.233
chr7	155517815	155517975	reg1002327.p1	9.808	+	TSC_hg19_v1_chr7_+_155437354 AK307515	-80527	+	TSC_hg19_v1_chr7_+_155437182 NM_053043	-80687	+	TSC_hg19_v1_chr7_+_155437147 BC011923	-80744	+	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	83903	-	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	86995	-	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	915336	-	AK307515|RBM33|155435|RNA binding motif protein 33##NM_053043|RBM33|155435|RNA binding motif protein 33##BC011923|RBM33|155435|RNA binding motif protein 33##AY927450|SHH|6469|sonic hedgehog##L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13	1.012637	0.0	
chr22	50228205	50228337	reg1000950.p1	9.807	+	TSC_hg19_v1_chr22_-_50221517 AK304776	-6790	-	AK292428 TSC_hg19_v1_chr22_-_50221332 BC030007 BC047508	-7005	-	AF005067 NM_014577	-9820	-	TSC_hg19_v1_chr22_+_50247506 NM_014838	19222	+	AB014537 BC167155 TSC_hg19_v1_chr22_+_50247533	19261	+	TSC_hg19_v1_chr22_-_50312087 BC001729 AJ290427 AJ303120 BC098562 AF318343	83744	-	AK304776|BRD1|23774|bromodomain containing 1##AK292428|BRD1|23774|bromodomain containing 1##BC030007|BRD1|23774|bromodomain containing 1##BC047508|BRD1|23774|bromodomain containing 1##AF005067|BRD1|23774|bromodomain containing 1##NM_014577|BRD1|23774|bromodomain containing 1##NM_014838|ZBED4|9889|zinc finger, BED-type containing 4##AB014537|ZBED4|9889|zinc finger, BED-type containing 4##BC167155|ZBED4|9889|zinc finger, BED-type containing 4##BC001729|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ290427|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ303120|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##BC098562|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AF318343|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)	1.039715	0.0	denovo_WM_7:-44:0.917
chr6	149353946	149354099	reg1002719.p1	9.804	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-285813	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-689831	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-690032	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	285081	+	AK315038 NM_015093 AK307650	285419	+	AY340238 NM_001002255 BC130305 HQ258040	367486	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.0	0.0	
chr3	32002441	32002586	reg1002103.p1	9.803	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	-428031	+	TSC_hg19_v1_chr3_+_31574468 AK074587	-428064	+	TSC_hg19_v1_chr3_+_31574119 AK311488	-428383	+	TSC_hg19_v1_chr3_-_32022751 BC003168 AF346291 AK304067 AK097503	20256	-	AK294003 NM_001137674	20752	+	AF392451 NM_001174060 NM_017784	20776	-	AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##BC003168|OSBPL10|114884|oxysterol binding protein-like 10##AF346291|OSBPL10|114884|oxysterol binding protein-like 10##AK304067|OSBPL10|114884|oxysterol binding protein-like 10##AK294003|ZNF860|344787|zinc finger protein 860##NM_001137674|ZNF860|344787|zinc finger protein 860##AF392451|OSBPL10|114884|oxysterol binding protein-like 10##NM_001174060|OSBPL10|114884|oxysterol binding protein-like 10##NM_017784|OSBPL10|114884|oxysterol binding protein-like 10	0.999234	0.0	
chr7	143898084	143898199	reg1002032.p1	9.802	+	BC136868 BC136878 EF560743 AK125680 NM_001003702	-5422	-	NM_198495 AK292236	-17589	+	BC136889 NM_001001659	-71964	+	NM_001001802 NM_001005287	31794	-	NM_001005328 BC136704 BC136711	58626	-	AK292236 NM_198495	68244	-	BC136868|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##BC136878|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##EF560743|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##AK125680|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##NM_001003702|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##NM_198495|CTAGE4|100128553|CTAGE family, member 4##AK292236|CTAGE8|100142659|CTAGE family, member 8##BC136889|OR2A14|135941|olfactory receptor, family 2, subfamily A, member 14##NM_001001659|OR2A14|135941|olfactory receptor, family 2, subfamily A, member 14##NM_001001802|OR2A42|402317|olfactory receptor, family 2, subfamily A, member 42##NM_001005287|OR2A1|346528|olfactory receptor, family 2, subfamily A, member 1##NM_001005328|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##BC136704|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##BC136711|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##AK292236|CTAGE8|100142659|CTAGE family, member 8##NM_198495|CTAGE4|100128553|CTAGE family, member 4	0.995856	0.0	
chr16	11702945	11703100	reg1002695.p1	9.801	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-22233	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-22835	-	TSC_hg19_v1_chr16_+_11439315 BC013040	-263704	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	59276	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	133634	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	188029	-	BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A	0.999508	0.0	denovo_WM_7:51:0.425	denovo_WM_7:52:0.425
chr5	14287184	14287330	reg1002051.p1	9.801	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-143585	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-275387	-	AX800026 AY045575 NM_001369	-342669	-	TSC_hg19_v1_chr5_+_14488527 AK131423	201282	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	294643	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	294707	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	0.0	0.0	
chr2	70348586	70348743	reg1000808.p3	9.799	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-33666	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-33747	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-33837	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	69457	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	127055	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	136586	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	1.736268	0.0	denovo_WM_7:0:0.208	denovo_WM_7:1:0.525	denovo_WM_7:16:0.864
chr21	35419431	35419547	reg1001949.p2	9.798	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-131397	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-228819	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-404634	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	26352	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	26440	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	316857	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.997826	0.0	denovo_WM_7:10:0.880
chr1	158921818	158921974	reg1002355.p1	9.796	+	NM_152501 NM_198928 NM_198929 NM_198930 AY185344 AY185345 AY185346 AY185347 BC090944 AK308350 BC020822 BC073133 BC114470 BC139741	-20537	+	TSC_hg19_v1_chr1_+_158801140 BC020715 BC032319 AK290392 AK313210 M81750 NM_002432	-120760	+	NM_001005278	-174472	-	NM_001206567 NM_005531 TSC_hg19_v1_chr1_+_158979716 AF208043 M63838 AB208989 BC017059 AF086545 AK296228 AK307957	57894	+	AK292042 BC010940 AF024714 NM_004833	124704	-	AK289541 NM_021189 TSC_hg19_v1_chr1_+_159141404 AK308915 NM_001127173 AF363367 AY358332 AF062733 BC033819 AY046418 AF529206 DQ890848 DQ894002	219569	+	NM_152501|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198928|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198929|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198930|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185344|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185345|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185346|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185347|PYHIN1|149628|pyrin and HIN domain family, member 1##BC090944|PYHIN1|149628|pyrin and HIN domain family, member 1##AK308350|PYHIN1|149628|pyrin and HIN domain family, member 1##BC020822|PYHIN1|149628|pyrin and HIN domain family, member 1##BC073133|PYHIN1|149628|pyrin and HIN domain family, member 1##BC114470|PYHIN1|149628|pyrin and HIN domain family, member 1##BC139741|PYHIN1|149628|pyrin and HIN domain family, member 1##BC020715|MNDA|4332|myeloid cell nuclear differentiation antigen##BC032319|MNDA|4332|myeloid cell nuclear differentiation antigen##AK290392|MNDA|4332|myeloid cell nuclear differentiation antigen##AK313210|MNDA|4332|myeloid cell nuclear differentiation antigen##M81750|MNDA|4332|myeloid cell nuclear differentiation antigen##NM_002432|MNDA|4332|myeloid cell nuclear differentiation antigen##NM_001005278|OR6N2|81442|olfactory receptor, family 6, subfamily N, member 2##NM_001206567|IFI16|3428|interferon, gamma-inducible protein 16##NM_005531|IFI16|3428|interferon, gamma-inducible protein 16##AF208043|IFI16|3428|interferon, gamma-inducible protein 16##M63838|IFI16|3428|interferon, gamma-inducible protein 16##AB208989|IFI16|3428|interferon, gamma-inducible protein 16##BC017059|IFI16|3428|interferon, gamma-inducible protein 16##AF086545|IFI16|3428|interferon, gamma-inducible protein 16##AK296228|IFI16|3428|interferon, gamma-inducible protein 16##AK307957|IFI16|3428|interferon, gamma-inducible protein 16##AK292042|AIM2|9447|absent in melanoma 2##BC010940|AIM2|9447|absent in melanoma 2##AF024714|AIM2|9447|absent in melanoma 2##NM_004833|AIM2|9447|absent in melanoma 2##AK289541|CADM3|57863|cell adhesion molecule 3##NM_021189|CADM3|57863|cell adhesion molecule 3##AK308915|CADM3|57863|cell adhesion molecule 3##NM_001127173|CADM3|57863|cell adhesion molecule 3##AF363367|CADM3|57863|cell adhesion molecule 3##AY358332|CADM3|57863|cell adhesion molecule 3##AF062733|CADM3|57863|cell adhesion molecule 3##BC033819|CADM3|57863|cell adhesion molecule 3##AY046418|CADM3|57863|cell adhesion molecule 3##AF529206|CADM3|57863|cell adhesion molecule 3##DQ890848|CADM3|57863|cell adhesion molecule 3##DQ894002|CADM3|57863|cell adhesion molecule 3	0.997507	0.0	
chr3	125314606	125314703	reg1001512.p2	9.795	+	TSC_hg19_v1_chr3_-_125314371 NM_022776	-281	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	-75601	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	-75623	-	TSC_hg19_v1_chr3_+_125635451 BC032772 BC041080	320802	+	BC073816 NM_001015050 NM_001195223	341229	-	AF231410 NM_001012337 BC141849 AK302014	373400	+	NM_022776|OSBPL11|114885|oxysterol binding protein-like 11##NM_003794|SNX4|8723|sorting nexin 4##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##BC032772|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC041080|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC073816|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001015050|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001195223|ALG1L|200810|asparagine-linked glycosylation 1-like##AF231410|ROPN1B|152015|rhophilin associated tail protein 1B##NM_001012337|ROPN1B|152015|rhophilin associated tail protein 1B##BC141849|ROPN1B|152015|rhophilin associated tail protein 1B	0.998449	0.0	
chr6	5072757	5072926	reg1002233.p2	9.794	+	TSC_hg19_v1_chr6_+_5030223 BC042032 BC133670	-42608	+	TSC_hg19_v1_chr6_-_5004262 BC017871 NM_006638	-68571	-	TSC_hg19_v1_chr6_+_5004043 AK094934	-68815	+	NM_001145115	12878	+	AF088060 EU831799 EU831876 TSC_hg19_v1_chr6_-_5260976 AK309661 AK291158 BC067762 AF170070 AF285118 BC009552	188156	-	TSC_hg19_v1_chr6_-_5261177 NM_001164840 NM_001164841 NM_020408	188325	-	BC042032|LOC100129461|100129461|uncharacterized LOC100129461##BC133670|LOC100129461|100129461|uncharacterized LOC100129461##BC017871|RPP40|10799|ribonuclease P/MRP 40kDa subunit##NM_006638|RPP40|10799|ribonuclease P/MRP 40kDa subunit##AK094934|LOC285778|285778|uncharacterized LOC285778##NM_001145115|PPP1R3G|648791|protein phosphatase 1, regulatory subunit 3G##AF088060|LYRM4|57128|LYR motif containing 4##EU831799|LYRM4|57128|LYR motif containing 4##EU831876|LYRM4|57128|LYR motif containing 4##AK309661|LYRM4|57128|LYR motif containing 4##AK291158|LYRM4|57128|LYR motif containing 4##BC067762|LYRM4|57128|LYR motif containing 4##AF170070|LYRM4|57128|LYR motif containing 4##AF285118|LYRM4|57128|LYR motif containing 4##BC009552|LYRM4|57128|LYR motif containing 4##NM_001164840|LYRM4|57128|LYR motif containing 4##NM_001164841|LYRM4|57128|LYR motif containing 4##NM_020408|LYRM4|57128|LYR motif containing 4	0.997506	0.0	
chr22	32046466	32046631	reg1002341.p1	9.791	+	TSC_hg19_v1_chr22_-_32026821 BC001482 NM_014338	-19716	-	BC033613 TSC_hg19_v1_chr22_+_32010180	-36382	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	-154002	+	TSC_hg19_v1_chr22_-_32058202 AB528208 CU013140 CU013428 CR456540 DQ656048	11660	-	NM_173566 TSC_hg19_v1_chr22_-_32146119	99580	-	NM_001242897 TSC_hg19_v1_chr22_+_32149953	103400	+	BC001482|PISD|23761|phosphatidylserine decarboxylase##NM_014338|PISD|23761|phosphatidylserine decarboxylase##BC033613|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##CU013140|PISD|23761|phosphatidylserine decarboxylase##CU013428|PISD|23761|phosphatidylserine decarboxylase##CR456540|PISD|23761|phosphatidylserine decarboxylase##NM_173566|PRR14L|253143|proline rich 14-like##NM_001242897|DEPDC5|9681|DEP domain containing 5	0.991506	0.0	denovo_WM_7:-27:0.777
chr2	7058923	7059012	reg1002086.p1	9.788	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1380	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-41104	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-52264	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1763236	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1918752	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	2084854	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	1.069947	0.061877	
chr8	25324932	25325112	reg1002273.p2	9.788	+	TSC_hg19_v1_chr8_+_25316748 AK299278 AL833627 BC015691 BC104450 BC104451	-8188	+	AK292505 TSC_hg19_v1_chr8_+_25316724	-8300	+	NM_152562	-8510	+	BC137106 BC137107 NM_022659 TSC_hg19_v1_chr8_-_25902675 AK001144	577644	-	TSC_hg19_v1_chr8_+_26149035 NM_002717	823999	+	AK314823 TSC_hg19_v1_chr8_+_26149043 BC041071	824027	+	AK299278|CDCA2|157313|cell division cycle associated 2##AL833627|CDCA2|157313|cell division cycle associated 2##BC015691|CDCA2|157313|cell division cycle associated 2##BC104450|CDCA2|157313|cell division cycle associated 2##BC104451|CDCA2|157313|cell division cycle associated 2##AK292505|CDCA2|157313|cell division cycle associated 2##NM_152562|CDCA2|157313|cell division cycle associated 2##BC137106|EBF2|64641|early B-cell factor 2##BC137107|EBF2|64641|early B-cell factor 2##NM_022659|EBF2|64641|early B-cell factor 2##AK001144|EBF2|64641|early B-cell factor 2##NM_002717|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AK314823|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC041071|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha	0.0	0.0	
chr9	115977538	115977718	reg1002585.p1	9.788	+	AX810714 TSC_hg19_v1_chr9_+_115913291 AK057903 AK295544 BC026252 U83461	-64345	+	TSC_hg19_v1_chr9_+_115913250 NM_001860	-64387	+	AK301275 HQ258583 AF022158 NM_003408 BC126390 BC144145	-158626	-	AB385371 TSC_hg19_v1_chr9_-_115983577 AK307498 AB014574 BC009609 AK303074 NM_015258	5955	-	NM_001859 TSC_hg19_v1_chr9_+_115983846 U83460 AK292511	6206	+	TSC_hg19_v1_chr9_+_115983867 AK129613 AK222866 AL831843 BC013611 BC061924	6243	+	AK057903|SLC31A2|1318|solute carrier family 31 (copper transporters), member 2##AK295544|SLC31A2|1318|solute carrier family 31 (copper transporters), member 2##BC026252|SLC31A2|1318|solute carrier family 31 (copper transporters), member 2##U83461|SLC31A2|1318|solute carrier family 31 (copper transporters), member 2##NM_001860|SLC31A2|1318|solute carrier family 31 (copper transporters), member 2##AK301275|ZFP37|7539|zinc finger protein 37 homolog (mouse)##HQ258583|ZFP37|7539|zinc finger protein 37 homolog (mouse)##AF022158|ZFP37|7539|zinc finger protein 37 homolog (mouse)##NM_003408|ZFP37|7539|zinc finger protein 37 homolog (mouse)##BC126390|ZFP37|7539|zinc finger protein 37 homolog (mouse)##BC144145|ZFP37|7539|zinc finger protein 37 homolog (mouse)##AK307498|FKBP15|23307|FK506 binding protein 15, 133kDa##AB014574|FKBP15|23307|FK506 binding protein 15, 133kDa##BC009609|FKBP15|23307|FK506 binding protein 15, 133kDa##AK303074|FKBP15|23307|FK506 binding protein 15, 133kDa##NM_015258|FKBP15|23307|FK506 binding protein 15, 133kDa##NM_001859|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##U83460|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK292511|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK129613|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK222866|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AL831843|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##BC013611|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##BC061924|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1	1.005825	0.0	denovo_WM_7:30:0.859
chr8	33497816	33497934	reg1002037.p2	9.786	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-40380	-	AB237597 AB103376 AY902194 BC001613 NM_024025 TSC_hg19_v1_chr8_-_33457473	-40416	-	TSC_hg19_v1_chr8_-_33457295 BC067804	-40588	-	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	1595112	+	NM_001031836 AK302391 BC028701	3143995	+	TSC_hg19_v1_chr8_-_37457377 AK025743	3959493	-	AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB237597|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB103376|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY902194|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC001613|DUSP26|78986|dual specificity phosphatase 26 (putative)##NM_024025|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AK025743|LOC157860|157860|uncharacterized LOC157860	0.0	0.181655	
chr11	103072959	103073069	reg1002304.p2	9.784	+	TSC_hg19_v1_chr11_+_102980188 AK125524 NM_001080463 NM_001377 AB231766 AB463019	-92815	+	TSC_hg19_v1_chr11_-_102962907 AK298227 NM_032299	-110091	-	AY364246 BC021074 TSC_hg19_v1_chr11_-_102962883 AK056993 BC004169	-110273	-	NM_001001711 AF429971 AK093336 AX748060 BC022018 BC022017 BC021710 BC021172	834324	+	AY359116 AY027517 AY027518 TSC_hg19_v1_chr11_-_104034843 AF113216 AB033832 AF336376 AK292801	961780	-	TSC_hg19_v1_chr11_-_104035039 NM_025208 NM_033135	962026	-	AK125524|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##NM_001080463|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##NM_001377|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##AB231766|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##AK298227|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##NM_032299|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AY364246|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC021074|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AK056993|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC004169|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##NM_001001711|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##AF429971|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##AK093336|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC022018|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC022017|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC021710|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC021172|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##AY359116|PDGFD|80310|platelet derived growth factor D##AY027517|PDGFD|80310|platelet derived growth factor D##AY027518|PDGFD|80310|platelet derived growth factor D##AF113216|PDGFD|80310|platelet derived growth factor D##AB033832|PDGFD|80310|platelet derived growth factor D##AF336376|PDGFD|80310|platelet derived growth factor D##AK292801|PDGFD|80310|platelet derived growth factor D##NM_025208|PDGFD|80310|platelet derived growth factor D##NM_033135|PDGFD|80310|platelet derived growth factor D	0.993884	0.243783	denovo_WM_7:17:0.248	denovo_WM_7:18:0.248	denovo_WM_7:19:0.248	denovo_WM_7:20:0.248	CTCF.p2:-34:0.244
chr2	86668241	86668398	reg1002068.p2	9.784	+	NM_018433	-49	+	AK297287 NM_001164730	-103114	-	AY562239 CR457301 CU687956 AK297201 TSC_hg19_v1_chr2_-_86564750 BC064846 AK294300 AK297359 AK297373 AK299334 AK023172 NM_001164731 NM_001164732 NM_022912	-103586	-	TSC_hg19_v1_chr2_+_86668482 BX647752 BX640698	136	+	TSC_hg19_v1_chr2_+_86668501 BC038297 BX647271 BX649109 CR749581 AB018285 BX648841 NM_001146688	216	+	AF219226 AY364249 EU446807 AB464340 TSC_hg19_v1_chr2_-_86790480 AF151907 AK129502	122166	-	NM_018433|KDM3A|55818|lysine (K)-specific demethylase 3A##AK297287|REEP1|65055|receptor accessory protein 1##NM_001164730|REEP1|65055|receptor accessory protein 1##AY562239|REEP1|65055|receptor accessory protein 1##CR457301|REEP1|65055|receptor accessory protein 1##AK297201|REEP1|65055|receptor accessory protein 1##BC064846|REEP1|65055|receptor accessory protein 1##AK294300|REEP1|65055|receptor accessory protein 1##AK297359|REEP1|65055|receptor accessory protein 1##AK297373|REEP1|65055|receptor accessory protein 1##AK299334|REEP1|65055|receptor accessory protein 1##AK023172|REEP1|65055|receptor accessory protein 1##NM_001164731|REEP1|65055|receptor accessory protein 1##NM_001164732|REEP1|65055|receptor accessory protein 1##NM_022912|REEP1|65055|receptor accessory protein 1##BX647752|KDM3A|55818|lysine (K)-specific demethylase 3A##BX640698|KDM3A|55818|lysine (K)-specific demethylase 3A##BC038297|KDM3A|55818|lysine (K)-specific demethylase 3A##BX647271|KDM3A|55818|lysine (K)-specific demethylase 3A##BX649109|KDM3A|55818|lysine (K)-specific demethylase 3A##CR749581|KDM3A|55818|lysine (K)-specific demethylase 3A##AB018285|KDM3A|55818|lysine (K)-specific demethylase 3A##BX648841|KDM3A|55818|lysine (K)-specific demethylase 3A##NM_001146688|KDM3A|55818|lysine (K)-specific demethylase 3A##AF219226|CHMP3|51652|charged multivesicular body protein 3##AY364249|CHMP3|51652|charged multivesicular body protein 3##EU446807|CHMP3|51652|charged multivesicular body protein 3##AF151907|CHMP3|51652|charged multivesicular body protein 3##AK129502|CHMP3|51652|charged multivesicular body protein 3	0.0	0.0	
chr21	45225138	45225265	reg1000604.p1	9.783	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-15716	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	-15786	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-28972	-	TSC_hg19_v1_chr21_+_45285029 AY358704	59859	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	59922	+	AK300562 NM_001037553	120077	+	AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.998717	0.0	denovo_WM_7:-33:0.310	denovo_WM_7:-34:0.310	denovo_WM_7:-35:0.310
chr18	36190975	36191114	reg1001898.p1	9.782	+	NM_001025087 NM_001025088 NM_001025089 NM_020180	-1045045	-	AF329265 AK295009 BC045711 TSC_hg19_v1_chr18_-_35145684 AK074596 AF248650 BC001946 BC004167 AB209774	-1045348	-	TSC_hg19_v1_chr18_-_34409124 BC087845 NM_015476	-1781924	-	TSC_hg19_v1_chr18_-_36915657 D28405	724612	-	TSC_hg19_v1_chr18_-_37380279 AK090603	1189224	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	3344155	+	NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##AF329265|CELF4|56853|CUGBP, Elav-like family member 4##AK295009|CELF4|56853|CUGBP, Elav-like family member 4##BC045711|CELF4|56853|CUGBP, Elav-like family member 4##AK074596|CELF4|56853|CUGBP, Elav-like family member 4##AF248650|CELF4|56853|CUGBP, Elav-like family member 4##BC001946|CELF4|56853|CUGBP, Elav-like family member 4##BC004167|CELF4|56853|CUGBP, Elav-like family member 4##AB209774|CELF4|56853|CUGBP, Elav-like family member 4##BC087845|TPGS2|25941|tubulin polyglutamylase complex subunit 2##NM_015476|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK090603|LOC647946|647946|uncharacterized LOC647946##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3	0.999236	0.0	
chr6	36512087	36512215	reg1002203.p1	9.780	+	TSC_hg19_v1_chr6_+_36410807 BC023525 AK302861 AK304377	-101319	+	AY305862 NM_173562 TSC_hg19_v1_chr6_+_36410797 AK295717 AK316456	-101481	+	BC031105 NM_152990	-101486	-	TSC_hg19_v1_chr6_-_36515239 AK312559	3001	-	TSC_hg19_v1_chr6_-_36515255 BC012085 NM_007271 BC095413	3106	-	NM_003017 TSC_hg19_v1_chr6_+_36562093	49940	+	BC023525|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK302861|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK304377|KCTD20|222658|potassium channel tetramerisation domain containing 20##AY305862|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_173562|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK295717|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK316456|KCTD20|222658|potassium channel tetramerisation domain containing 20##BC031105|PXT1|222659|peroxisomal, testis specific 1##NM_152990|PXT1|222659|peroxisomal, testis specific 1##AK312559|STK38|11329|serine/threonine kinase 38##BC012085|STK38|11329|serine/threonine kinase 38##NM_007271|STK38|11329|serine/threonine kinase 38##BC095413|STK38|11329|serine/threonine kinase 38##NM_003017|SRSF3|6428|serine/arginine-rich splicing factor 3	1.007651	0.0	denovo_WM_7:-40:0.942
chr7	66099931	66100111	reg1002083.p2	9.780	+	BC042482 TSC_hg19_v1_chr7_+_66093944 AK056631 AK127790	-6079	+	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	-6147	+	TSC_hg19_v1_chr7_-_66057374 BC080520 BC057835 BC067867 AK310548 BC103766 AK310370 AK296922	-42660	-	TSC_hg19_v1_chr7_+_66147121 AK056864	47119	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	105623	+	TSC_hg19_v1_chr7_+_66205692 BC015330	105673	+	BC042482|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK056631|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK310548|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##BC103766|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK310370|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK296922|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK056864|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1	0.993729	0.0	
chr9	138981601	138981726	reg1001735.p1	9.780	+	TSC_hg19_v1_chr9_-_138853220 AF176796 BC004967 NM_016172	-128460	-	CU678830 DQ892567 DQ895782 TSC_hg19_v1_chr9_-_138853062 BC011822	-128624	-	TSC_hg19_v1_chr9_-_138799245 NM_015447	-182502	-	TSC_hg19_v1_chr9_-_138987136 BC015649 AK129748 NM_144653	5472	-	BC092490 BC111053 TSC_hg19_v1_chr9_-_139010485	28772	-	BC014304 BC013282 TSC_hg19_v1_chr9_-_139010700 AK023162 AK091349 AX746927 BC021231	29007	-	AF176796|UBAC1|10422|UBA domain containing 1##BC004967|UBAC1|10422|UBA domain containing 1##NM_016172|UBAC1|10422|UBA domain containing 1##DQ892567|UBAC1|10422|UBA domain containing 1##DQ895782|UBAC1|10422|UBA domain containing 1##BC011822|UBAC1|10422|UBA domain containing 1##NM_015447|CAMSAP1|157922|calmodulin regulated spectrin-associated protein 1##BC015649|NACC2|138151|NACC family member 2, BEN and BTB (POZ) domain containing##NM_144653|NACC2|138151|NACC family member 2, BEN and BTB (POZ) domain containing##BC092490|C9orf69|90120|chromosome 9 open reading frame 69##BC111053|C9orf69|90120|chromosome 9 open reading frame 69##BC014304|C9orf69|90120|chromosome 9 open reading frame 69##BC013282|C9orf69|90120|chromosome 9 open reading frame 69##AK023162|C9orf69|90120|chromosome 9 open reading frame 69##AK091349|C9orf69|90120|chromosome 9 open reading frame 69##BC021231|C9orf69|90120|chromosome 9 open reading frame 69	0.998842	0.086317	denovo_WM_7:-36:0.527	denovo_WM_7:-38:0.307
chr2	199755345	199755439	reg1001825.p1	9.777	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	-1086022	+	NM_197970 AK302817	-1104406	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-1105352	-	TSC_hg19_v1_chr2_-_200213802 AK025127	458458	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	565410	-	TSC_hg19_v1_chr2_-_200322238 AJ438951	566858	-	AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2##AJ438951|SATB2|23314|SATB homeobox 2	0.0	0.0	
chr20	56195561	56195697	reg1002705.p1	9.776	+	BC131706 AK314062 AK290918 BC028218 AJ300575 AX775973 AX775975 AK122761 NM_001160417 NM_001160418 NM_001160419 NM_030776	-91	-	NM_002591 AK290802 TSC_hg19_v1_chr20_+_56136165 AK300072 BC023978 BX648510 L05144	-59472	+	BC130486 AF336042 DQ778111 DQ778124 DQ778125 DQ778126 DQ778127 DQ778128 DQ778129 NM_080618 BC060763 AK313990 AK128070	-95428	-	TSC_hg19_v1_chr20_-_56285017 AF305616 AX775889 NM_020182	89360	-	TSC_hg19_v1_chr20_+_56285236 AK056098	89596	+	TSC_hg19_v1_chr20_-_56285634 BC080635 AF224278 AY128643 NM_199169 NM_199170 AX775887 AK296199	89993	-	BC131706|ZBP1|81030|Z-DNA binding protein 1##AK314062|ZBP1|81030|Z-DNA binding protein 1##AK290918|ZBP1|81030|Z-DNA binding protein 1##BC028218|ZBP1|81030|Z-DNA binding protein 1##AJ300575|ZBP1|81030|Z-DNA binding protein 1##AX775973|ZBP1|81030|Z-DNA binding protein 1##AX775975|ZBP1|81030|Z-DNA binding protein 1##AK122761|ZBP1|81030|Z-DNA binding protein 1##NM_001160417|ZBP1|81030|Z-DNA binding protein 1##NM_001160418|ZBP1|81030|Z-DNA binding protein 1##NM_001160419|ZBP1|81030|Z-DNA binding protein 1##NM_030776|ZBP1|81030|Z-DNA binding protein 1##NM_002591|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK290802|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK300072|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC023978|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BX648510|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##L05144|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC130486|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF336042|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778111|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778124|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778125|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778126|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778127|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778128|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778129|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_080618|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##BC060763|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK313990|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK128070|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF305616|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_020182|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##BC080635|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##AF224278|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##AY128643|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_199169|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##NM_199170|PMEPA1|56937|prostate transmembrane protein, androgen induced 1##AK296199|PMEPA1|56937|prostate transmembrane protein, androgen induced 1	1.050349	0.0	denovo_WM_7:-2:0.930
chr2	202117945	202118116	reg1002456.p2	9.776	+	NM_001080124 NM_001228 NM_033355 NM_033358 AF422927 AF422928 BC010390 AK310630 BC017031 U60520 X98176	-19805	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	-70170	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	-70410	+	NM_001080125 AF422926 BC068050 AF422925 AF422929 X98172 AY429525	4767	+	NM_033356 X98173	7226	+	AK124115 BC031603 NM_001127391 NM_139163 AK292283	104063	-	NM_001080124|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001228|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033355|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033358|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422927|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422928|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC010390|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310630|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC017031|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##U60520|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98176|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001080125|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422926|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC068050|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422929|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98172|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033356|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98173|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK124115|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##BC031603|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_001127391|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_139163|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##AK292283|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12	1.998856	0.0	denovo_WM_7:-6:0.631	denovo_WM_7:-7:0.218	denovo_WM_7:8:0.661
chr3	49481631	49481789	reg1002319.p1	9.776	+	TSC_hg19_v1_chr3_-_49466744 AK313073 NM_032316 AK301846	-14958	-	TSC_hg19_v1_chr3_-_49466731 BC005050 AK094248 AF538150 AJ299740 BC050653	-15007	-	NM_000481 NM_001164710 NM_001164711 NM_001164712 TSC_hg19_v1_chr3_-_49460121	-21594	-	TSC_hg19_v1_chr3_+_49506079 NM_001177643	24397	+	TSC_hg19_v1_chr3_+_49507721 NM_001165928 NM_001177634 NM_001177635 NM_001177636 NM_001177637 NM_001177638 NM_001177639 NM_001177640 NM_001177641 NM_001177642 NM_001177644 NM_004393 L19711 BC012740 BC014616 AK291692	26081	+	TSC_hg19_v1_chr3_+_49547870 DQ893491 DQ896435	66207	+	AK313073|NICN1|84276|nicolin 1##NM_032316|NICN1|84276|nicolin 1##AK301846|NICN1|84276|nicolin 1##BC005050|NICN1|84276|nicolin 1##AK094248|NICN1|84276|nicolin 1##AF538150|NICN1|84276|nicolin 1##AJ299740|NICN1|84276|nicolin 1##BC050653|NICN1|84276|nicolin 1##NM_000481|AMT|275|aminomethyltransferase##NM_001164710|AMT|275|aminomethyltransferase##NM_001164711|AMT|275|aminomethyltransferase##NM_001164712|AMT|275|aminomethyltransferase##NM_001177643|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001165928|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177634|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177635|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177636|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177637|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177638|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177639|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177640|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177641|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177642|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177644|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_004393|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##L19711|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC012740|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC014616|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK291692|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ893491|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ896435|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)	0.975736	0.0	denovo_WM_7:38:0.265	denovo_WM_7:47:0.265
chr4	153375711	153375856	reg1001998.p1	9.776	+	NM_001013415 AY008274	-72119	-	AF383178 AK001933 BC037320 AB209725 AB527140 TSC_hg19_v1_chr4_-_153273893 AK315142 BC059373 AK223449 AK299722 AF411972 AY033553 NM_018315	-101887	-	TSC_hg19_v1_chr4_-_152682144 AB019410 AK303461 AK222887 AK225241 AK312957 AF151033 AF026851 BC067838 BC130348 BC136547 NM_004564	-693642	-	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	80511	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	81650	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	225417	-	NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##AF383178|FBXW7|55294|F-box and WD repeat domain containing 7##AK001933|FBXW7|55294|F-box and WD repeat domain containing 7##BC037320|FBXW7|55294|F-box and WD repeat domain containing 7##AB209725|FBXW7|55294|F-box and WD repeat domain containing 7##AK315142|FBXW7|55294|F-box and WD repeat domain containing 7##BC059373|FBXW7|55294|F-box and WD repeat domain containing 7##AK223449|FBXW7|55294|F-box and WD repeat domain containing 7##AK299722|FBXW7|55294|F-box and WD repeat domain containing 7##AF411972|FBXW7|55294|F-box and WD repeat domain containing 7##AY033553|FBXW7|55294|F-box and WD repeat domain containing 7##NM_018315|FBXW7|55294|F-box and WD repeat domain containing 7##AB019410|PET112|5188|PET112 homolog (yeast)##AK303461|PET112|5188|PET112 homolog (yeast)##AK222887|PET112|5188|PET112 homolog (yeast)##AK225241|PET112|5188|PET112 homolog (yeast)##AK312957|PET112|5188|PET112 homolog (yeast)##AF151033|PET112|5188|PET112 homolog (yeast)##AF026851|PET112|5188|PET112 homolog (yeast)##BC067838|PET112|5188|PET112 homolog (yeast)##BC130348|PET112|5188|PET112 homolog (yeast)##BC136547|PET112|5188|PET112 homolog (yeast)##NM_004564|PET112|5188|PET112 homolog (yeast)##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154	0.775448	0.344489	CTCF.p2:-26:0.344	denovo_WM_7:105:0.450
chr15	75405295	75405475	reg1002357.p1	9.775	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-89404	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-89457	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-117478	+	AK128205 TSC_hg19_v1_chr15_+_75491259	85861	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	88827	+	BC110367 TSC_hg19_v1_chr15_+_75494233	88848	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.019611	0.0	
chr1	32587905	32588042	reg1002430.p1	9.774	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	-14326	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	-49399	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	-49469	+	TSC_hg19_v1_chr1_+_32645315 AL832636 AL832338	57314	+	TSC_hg19_v1_chr1_+_32645343 AK096939 NM_175852	57368	+	TSC_hg19_v1_chr1_+_32645661 AL832637	57683	+	NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL832636|TXLNA|200081|taxilin alpha##AL832338|TXLNA|200081|taxilin alpha##AK096939|TXLNA|200081|taxilin alpha##NM_175852|TXLNA|200081|taxilin alpha##AL832637|TXLNA|200081|taxilin alpha	1.047592	0.0	denovo_WM_7:13:0.816
chr17	28690708	28690851	reg1002045.p1	9.774	+	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	-29717	-	NM_000386 TSC_hg19_v1_chr17_-_28619220	-71576	-	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	-71820	-	TSC_hg19_v1_chr17_+_28705953 NM_001304 BC051702 BC045549 BC054116	15160	+	TSC_hg19_v1_chr17_+_28705963 D85390 BC045624	15187	+	TSC_hg19_v1_chr17_+_28705984 U65090 AB385118	15210	+	AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_000386|BLMH|642|bleomycin hydrolase##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_001304|CPD|1362|carboxypeptidase D##BC051702|CPD|1362|carboxypeptidase D##BC045549|CPD|1362|carboxypeptidase D##BC054116|CPD|1362|carboxypeptidase D##D85390|CPD|1362|carboxypeptidase D##BC045624|CPD|1362|carboxypeptidase D##U65090|CPD|1362|carboxypeptidase D	0.988642	0.0	denovo_WM_7:-23:0.303	denovo_WM_7:-24:0.303	denovo_WM_7:-25:0.303
chr18	20822234	20822368	reg1001973.p1	9.773	+	BC037218 NM_138375	-86513	+	EF028204 NM_001100619	-106575	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-308486	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	195570	-	AK057292 NM_003831	210485	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	210945	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.0	0.0	
chr19	16482504	16482684	reg1002115.p2	9.773	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-46825	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-46953	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-173844	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	100182	-	TSC_hg19_v1_chr19_-_16582810 AK291359	100258	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	124376	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.0	0.0	
chr15	63789352	63789490	reg1002151.p1	9.771	+	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	-115346	-	BT006656 DQ893188 DQ896511 EU831616 EU831623 EU831703 EU831708 AF051882 BC000278 AF037335 BC011691 TSC_hg19_v1_chr15_-_63674046 AK096845 BC023981	-115429	-	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	-219608	+	TSC_hg19_v1_chr15_+_63796791 AK314223	7361	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	7456	+	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	100158	+	AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##BT006656|CA12|771|carbonic anhydrase XII##DQ893188|CA12|771|carbonic anhydrase XII##DQ896511|CA12|771|carbonic anhydrase XII##EU831616|CA12|771|carbonic anhydrase XII##EU831623|CA12|771|carbonic anhydrase XII##EU831703|CA12|771|carbonic anhydrase XII##EU831708|CA12|771|carbonic anhydrase XII##AF051882|CA12|771|carbonic anhydrase XII##BC000278|CA12|771|carbonic anhydrase XII##AF037335|CA12|771|carbonic anhydrase XII##BC011691|CA12|771|carbonic anhydrase XII##AK096845|CA12|771|carbonic anhydrase XII##BC023981|CA12|771|carbonic anhydrase XII##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK314223|USP3|9960|ubiquitin specific peptidase 3##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22	0.997839	0.0	denovo_WM_7:30:0.881
chr4	153767996	153768102	reg1001136.p1	9.771	+	TSC_hg19_v1_chr4_+_153701117 AK290472 U52521 BC103759 BC105114 BC105116 BC143675 BC143676 AK096509	-66922	+	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	-67028	+	BC037869 NM_145720	-67146	-	NM_033393 AB051514	96141	+	BC011052 NM_001130067	306220	+	TSC_hg19_v1_chr4_+_154125594 AK308731 NM_015271 AB011089 AF220018	357556	+	AK290472|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##U52521|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC103759|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105114|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105116|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143675|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143676|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK096509|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##NM_033393|FHDC1|85462|FH2 domain containing 1##AB051514|FHDC1|85462|FH2 domain containing 1##BC011052|TRIM2|23321|tripartite motif containing 2##NM_001130067|TRIM2|23321|tripartite motif containing 2##AK308731|TRIM2|23321|tripartite motif containing 2##NM_015271|TRIM2|23321|tripartite motif containing 2##AB011089|TRIM2|23321|tripartite motif containing 2##AF220018|TRIM2|23321|tripartite motif containing 2	0.994405	0.359279	CTCF.p2:-7:0.359	denovo_WM_7:33:0.758
chr1	112257616	112257735	reg1002393.p2	9.770	+	TSC_hg19_v1_chr1_+_112162449 NM_001010935 NM_002884 BC014086	-95208	+	BC041707 BC064411 NM_001081976	-151096	-	NM_000677 NM_020683	-210933	-	AB528568 CU689180 AL137198 AK295012 BC031558 TSC_hg19_v1_chr1_-_112282012 AK055667 NM_019099	24280	-	TSC_hg19_v1_chr1_+_112298189 NM_007204 BC034953 AF171063	40544	+	AL137199 NM_198926 AK293989 TSC_hg19_v1_chr1_-_112298450	40760	-	NM_001010935|RAP1A|5906|RAP1A, member of RAS oncogene family##NM_002884|RAP1A|5906|RAP1A, member of RAS oncogene family##BC014086|RAP1A|5906|RAP1A, member of RAS oncogene family##BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##AL137198|FAM212B|55924|family with sequence similarity 212, member B##AK295012|FAM212B|55924|family with sequence similarity 212, member B##BC031558|FAM212B|55924|family with sequence similarity 212, member B##AK055667|FAM212B|55924|family with sequence similarity 212, member B##NM_019099|FAM212B|55924|family with sequence similarity 212, member B##NM_007204|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC034953|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF171063|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AL137199|FAM212B|55924|family with sequence similarity 212, member B##NM_198926|FAM212B|55924|family with sequence similarity 212, member B##AK293989|FAM212B|55924|family with sequence similarity 212, member B	0.98804	0.480665	CTCF.p2:6:0.481	denovo_WM_7:38:0.490	denovo_WM_7:39:0.285	denovo_WM_7:40:0.213
chr1	27579251	27579415	reg1002464.p1	9.767	+	TSC_hg19_v1_chr1_+_27561153 BC032523	-18171	+	TSC_hg19_v1_chr1_+_27561124 AK315564	-18206	+	NM_015023 TSC_hg19_v1_chr1_+_27561056	-18299	+	TSC_hg19_v1_chr1_+_27648669 NM_032125 AK313110 AK303821	69318	+	AL136683 BC011579 BC090039 TSC_hg19_v1_chr1_+_27648745	69400	+	TSC_hg19_v1_chr1_+_27648756 EU831420 EU831513 AF251699 AK222642 AK307077 BX648289	69483	+	BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_032125|TMEM222|84065|transmembrane protein 222##AK313110|TMEM222|84065|transmembrane protein 222##AK303821|TMEM222|84065|transmembrane protein 222##AL136683|TMEM222|84065|transmembrane protein 222##BC011579|TMEM222|84065|transmembrane protein 222##BC090039|TMEM222|84065|transmembrane protein 222##EU831420|TMEM222|84065|transmembrane protein 222##EU831513|TMEM222|84065|transmembrane protein 222##AF251699|TMEM222|84065|transmembrane protein 222##AK222642|TMEM222|84065|transmembrane protein 222##AK307077|TMEM222|84065|transmembrane protein 222##BX648289|LOC644961|644961|actin, beta pseudogene	0.984024	0.0	denovo_WM_7:-25:0.316	denovo_WM_7:-27:0.542
chr5	10358012	10358170	reg1002428.p1	9.767	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-4083	+	TSC_hg19_v1_chr5_+_10353836 AK000970 BC136461 BC136462 BC142679 BC142694	-4227	+	TSC_hg19_v1_chr5_+_10353827 AK300034 BC111494 AB011169 AK296585 AK299339 NM_005885	-4277	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	83912	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	84061	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	206351	+	AK000970|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136461|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136462|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142679|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142694|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK300034|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC111494|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AB011169|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK296585|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK299339|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_005885|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B	0.999354	0.0	
chr17	16879209	16879375	reg1002445.p2	9.766	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-3888	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-285688	+	AK131401 NM_020787	-322131	-	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	66672	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	230321	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	230365	-	AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK131401|ZNF624|57547|zinc finger protein 624##NM_020787|ZNF624|57547|zinc finger protein 624##NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6	0.997019	0.0	denovo_WM_7:12:0.424	denovo_WM_7:13:0.424
chr10	18278823	18278944	reg1001759.p1	9.762	+	NM_001145195 NM_152725 AK055061 BC035118 BC047635 AK295294 BC094700	-38054	+	AK308132 AK308167 J05550 NM_002438 X55635 BC146838 DQ663787	-180490	+	NM_001098844 BC157856	-237662	+	NM_201593 NM_201596 NM_201597 S60415 BC136409 AF137376 AF423191 AY393860 AY675091 AK296471 AK311694 AK307526 NM_001167945 NM_201571 NM_201572 AK293837	150824	+	NM_000724 AB208917 U95019	270757	+	AK310943 NM_201590	350730	+	NM_001145195|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##NM_152725|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK055061|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC035118|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC047635|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK295294|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC094700|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##NM_201593|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201596|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201597|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##S60415|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##BC136409|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF137376|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF423191|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY393860|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY675091|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK296471|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK311694|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK307526|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_001167945|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201571|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201572|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK293837|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit	0.446865	0.0	
chr2	47954250	47954390	reg1002384.p1	9.762	+	TSC_hg19_v1_chr2_-_47918421 D28393	-35901	-	AF287302 NM_022055 BC047749	-156837	-	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	-324003	+	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	55976	+	AK304140 AK315108 NM_025133	161531	-	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	178473	-	D28393|RPL18A|6142|ribosomal protein L18a##AF287302|KCNK12|56660|potassium channel, subfamily K, member 12##NM_022055|KCNK12|56660|potassium channel, subfamily K, member 12##BC047749|KCNK12|56660|potassium channel, subfamily K, member 12##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11	0.994811	0.0	denovo_WM_7:-19:0.926
chr9	140339782	140339927	reg1002279.p1	9.762	+	TSC_hg19_v1_chr9_-_140335810 BC141810 AY359088 NM_001033113 NM_198585	-4009	-	TSC_hg19_v1_chr9_+_140317844 BC041594 NM_006647 BC110840 AB095031 AY927790 AY927791 CU692004 AY255769 AK098341	-21952	+	NM_017820 TSC_hg19_v1_chr9_-_140317724	-22136	-	TSC_hg19_v1_chr9_-_140353612 BC110498	13778	-	TSC_hg19_v1_chr9_-_140353758 AK074602 BC072412	13906	-	AY255128 AY255129 AY255130 AY255131 AY255132 NM_001130969 NM_001130970 NM_001130971 NM_001178064 NM_015537 TSC_hg19_v1_chr9_-_140353787	13948	-	BC141810|ENTPD8|377841|ectonucleoside triphosphate diphosphohydrolase 8##AY359088|ENTPD8|377841|ectonucleoside triphosphate diphosphohydrolase 8##NM_001033113|ENTPD8|377841|ectonucleoside triphosphate diphosphohydrolase 8##NM_198585|ENTPD8|377841|ectonucleoside triphosphate diphosphohydrolase 8##BC041594|NOXA1|10811|NADPH oxidase activator 1##NM_006647|NOXA1|10811|NADPH oxidase activator 1##BC110840|NOXA1|10811|NADPH oxidase activator 1##AB095031|NOXA1|10811|NADPH oxidase activator 1##AY927790|NOXA1|10811|NADPH oxidase activator 1##AY927791|NOXA1|10811|NADPH oxidase activator 1##AY255769|NOXA1|10811|NADPH oxidase activator 1##AK098341|NOXA1|10811|NADPH oxidase activator 1##NM_017820|EXD3|54932|exonuclease 3'-5' domain containing 3##BC110498|NELF|26012|nasal embryonic LHRH factor##AK074602|NELF|26012|nasal embryonic LHRH factor##BC072412|NELF|26012|nasal embryonic LHRH factor##AY255128|NELF|26012|nasal embryonic LHRH factor##AY255129|NELF|26012|nasal embryonic LHRH factor##AY255130|NELF|26012|nasal embryonic LHRH factor##AY255131|NELF|26012|nasal embryonic LHRH factor##AY255132|NELF|26012|nasal embryonic LHRH factor##NM_001130969|NELF|26012|nasal embryonic LHRH factor##NM_001130970|NELF|26012|nasal embryonic LHRH factor##NM_001130971|NELF|26012|nasal embryonic LHRH factor##NM_001178064|NELF|26012|nasal embryonic LHRH factor##NM_015537|NELF|26012|nasal embryonic LHRH factor	0.80019	0.04984	denovo_WM_7:-8:0.603
chr4	183897778	183897939	reg1002234.p2	9.761	+	TSC_hg19_v1_chr4_-_183838615 NM_001012732 NM_001921	-59224	-	TSC_hg19_v1_chr4_-_183838533 BC001286 BC088357 AK293135 AK313221 AK310788	-59328	-	NM_001080477 HE578284 HE578285	-652704	+	TSC_hg19_v1_chr4_+_184020431 NM_024949	122620	+	NM_001111319	344068	-	NM_001185149	345720	-	NM_001012732|DCTD|1635|dCMP deaminase##NM_001921|DCTD|1635|dCMP deaminase##BC001286|DCTD|1635|dCMP deaminase##BC088357|DCTD|1635|dCMP deaminase##AK293135|DCTD|1635|dCMP deaminase##AK313221|DCTD|1635|dCMP deaminase##AK310788|DCTD|1635|dCMP deaminase##NM_001080477|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##NM_024949|WWC2|80014|WW and C2 domain containing 2##NM_001111319|CLDN22|53842|claudin 22##NM_001185149|CLDN24|100132463|claudin 24	2.138602	0.0	
chr9	33813691	33813871	reg1002397.p1	9.761	+	BC069476 BC069494 NM_002771 X15505 D45417	-18217	+	AB298285 NM_001197097 NM_007343 AB528734 X71345 X72781 TSC_hg19_v1_chr9_+_33750676 BC030238 AY052783 AB298286 NM_001197098	-63141	+	TSC_hg19_v1_chr9_+_33624216 M62898	-189563	+	TSC_hg19_v1_chr9_+_33817170 NM_017811	3403	+	TSC_hg19_v1_chr9_+_33817325 BC047584 AK000426 BC004862 AK225880	3613	+	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	3891	+	BC069476|PRSS3|5646|protease, serine, 3##BC069494|PRSS3|5646|protease, serine, 3##NM_002771|PRSS3|5646|protease, serine, 3##X15505|PRSS3|5646|protease, serine, 3##D45417|PRSS3|5646|protease, serine, 3##AB298285|PRSS3|5646|protease, serine, 3##NM_001197097|PRSS3|5646|protease, serine, 3##NM_007343|PRSS3|5646|protease, serine, 3##X71345|PRSS3|5646|protease, serine, 3##X72781|PRSS3|5646|protease, serine, 3##BC030238|PRSS3|5646|protease, serine, 3##AY052783|PRSS3|5646|protease, serine, 3##AB298286|PRSS3|5646|protease, serine, 3##NM_001197098|PRSS3|5646|protease, serine, 3##M62898|ANXA2P2|304|annexin A2 pseudogene 2##NM_017811|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC047584|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000426|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC004862|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK225880|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2	0.995147	0.99959	CTCF.p2:83:1.000
chr6	116731922	116732043	reg1000756.p3	9.759	+	TSC_hg19_v1_chr6_-_116692863 AK298559 AK316303	-39113	-	TSC_hg19_v1_chr6_+_116692109 NM_013352 AF098066	-39839	+	BC039245 NM_001080976 BC043526	-130661	+	NM_001010919	50573	+	BC032556 NM_153711 AK094140 AK315572	100839	+	AK300309 AY358252 NM_153036 BC057769 AK056801	118226	+	AK298559|LOC100287467|100287467|uncharacterized LOC100287467##AK316303|LOC100287467|100287467|uncharacterized LOC100287467##NM_013352|DSE|29940|dermatan sulfate epimerase##AF098066|DSE|29940|dermatan sulfate epimerase##BC039245|DSE|29940|dermatan sulfate epimerase##NM_001080976|DSE|29940|dermatan sulfate epimerase##BC043526|DSE|29940|dermatan sulfate epimerase##NM_001010919|FAM26F|441168|family with sequence similarity 26, member F##BC032556|FAM26E|254228|family with sequence similarity 26, member E##NM_153711|FAM26E|254228|family with sequence similarity 26, member E##AK094140|FAM26E|254228|family with sequence similarity 26, member E##AK315572|FAM26E|254228|family with sequence similarity 26, member E##AK300309|FAM26D|221301|family with sequence similarity 26, member D##AY358252|FAM26D|221301|family with sequence similarity 26, member D##NM_153036|FAM26D|221301|family with sequence similarity 26, member D##BC057769|FAM26D|221301|family with sequence similarity 26, member D##AK056801|FAM26D|221301|family with sequence similarity 26, member D	1.990779	0.0	denovo_WM_7:-59:0.358	denovo_WM_7:-60:0.268	denovo_WM_7:-76:0.288	denovo_WM_7:-77:0.377
chr15	33015798	33015940	reg1001901.p2	9.758	+	TSC_hg19_v1_chr15_-_33011125 AK093166 AX747968	-4703	-	AK095741 TSC_hg19_v1_chr15_+_33010204 AK095890 AK095972 AK312265 NM_001191322 NM_001191323 NM_013372 AY232290 AF110137 BC093778 BC101611	-5612	+	NM_001144757 NM_003020 AK314965 BC093053 BC005349 Y00757	-81955	+	NM_001103184 BC101971 BC103692 BC107593 TSC_hg19_v1_chr15_-_33360376 AL833157	344366	-	AB001025 TSC_hg19_v1_chr15_+_33603167 AJ001515 NM_001036 NM_001243996	587300	+	TSC_hg19_v1_chr15_-_34212524 BC037796	1196689	-	AK095741|GREM1|26585|gremlin 1##AK095890|GREM1|26585|gremlin 1##AK095972|GREM1|26585|gremlin 1##AK312265|GREM1|26585|gremlin 1##NM_001191322|GREM1|26585|gremlin 1##NM_001191323|GREM1|26585|gremlin 1##NM_013372|GREM1|26585|gremlin 1##AY232290|GREM1|26585|gremlin 1##AF110137|GREM1|26585|gremlin 1##BC093778|GREM1|26585|gremlin 1##BC101611|GREM1|26585|gremlin 1##NM_001144757|SCG5|6447|secretogranin V (7B2 protein)##NM_003020|SCG5|6447|secretogranin V (7B2 protein)##AK314965|SCG5|6447|secretogranin V (7B2 protein)##BC093053|SCG5|6447|secretogranin V (7B2 protein)##BC005349|SCG5|6447|secretogranin V (7B2 protein)##Y00757|SCG5|6447|secretogranin V (7B2 protein)##NM_001103184|FMN1|342184|formin 1##BC103692|FMN1|342184|formin 1##BC107593|FMN1|342184|formin 1##AL833157|FMN1|342184|formin 1##AB001025|RYR3|6263|ryanodine receptor 3##AJ001515|RYR3|6263|ryanodine receptor 3##NM_001036|RYR3|6263|ryanodine receptor 3##NM_001243996|RYR3|6263|ryanodine receptor 3	1.04479	0.0	denovo_WM_7:-33:0.739
chr19	5271319	5271444	reg1002325.p1	9.758	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-238482	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-302208	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-302257	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	69413	-	AK098722 NM_181710 AK292251 BC017592	184045	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	351377	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	0.99424	0.0	denovo_WM_7:30:0.244	denovo_WM_7:31:0.244	denovo_WM_7:32:0.244	denovo_WM_7:33:0.244
chr1	107684847	107684976	reg1002364.p2	9.757	+	AB023193 TSC_hg19_v1_chr1_+_107683657	-1307	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-2169	+	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	-85546	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	546213	-	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	822689	-	AJ619961 NM_213651 AK292567	1050485	-	AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.990221	0.878682	CTCF.p2:-13:0.879	denovo_WM_7:25:0.785
chr4	29617943	29618093	reg1002478.p1	9.755	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-2755478	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-3032338	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-3126033	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	1103981	+	AB006757 TSC_hg19_v1_chr4_+_30722198	1104176	+	TSC_hg19_v1_chr4_+_30722465 AB006756	1104441	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.995269	0.0	denovo_WM_7:-32:0.825
chr11	67706626	67706736	reg1001884.p1	9.754	+	TSC_hg19_v1_chr11_-_67572800 BC063712 BC110365	-133929	-	TSC_hg19_v1_chr11_-_67450557 AB055770	-256135	-	BC007685 NM_001031615	-257997	-	TSC_hg19_v1_chr11_-_67771527 BC101568 BC105104 BC025669 AJ422142 AJ271326 BC092472 BC033623 NM_030930	64886	-	TSC_hg19_v1_chr11_+_67776039 EF411198 NM_001161473	69350	+	TSC_hg19_v1_chr11_+_67777790 NM_000694 NM_001030010 BC002553 AK291505	71109	+	BC063712|FAM86C2P|645332|family with sequence similarity 86, member A pseudogene##BC110365|FAM86C2P|645332|family with sequence similarity 86, member A pseudogene##AB055770|RPL37|6167|ribosomal protein L37##BC007685|ALDH3B2|222|aldehyde dehydrogenase 3 family, member B2##NM_001031615|ALDH3B2|222|aldehyde dehydrogenase 3 family, member B2##BC101568|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC105104|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC025669|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##AJ422142|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##AJ271326|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC092472|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC033623|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##NM_030930|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##EF411198|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001161473|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_000694|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001030010|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC002553|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK291505|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1	1.232517	0.0	
chr3	128369766	128369879	reg1001598.p1	9.754	+	TSC_hg19_v1_chr3_-_128369724 NM_002950	-84	-	TSC_hg19_v1_chr3_-_128369662 AK297941 AK312369 AK296905 CR749284 BC010839 AK223595	-140	-	BC007995 TSC_hg19_v1_chr3_-_128369648 CR456742 AB527671 CU679817	-236	-	AK297513 TSC_hg19_v1_chr3_-_128399968	30123	-	NM_004637 TSC_hg19_v1_chr3_+_128444978	75160	+	TSC_hg19_v1_chr3_+_128445025 AK094449	75202	+	NM_002950|RPN1|6184|ribophorin I##AK297941|RPN1|6184|ribophorin I##AK312369|RPN1|6184|ribophorin I##AK296905|RPN1|6184|ribophorin I##CR749284|RPN1|6184|ribophorin I##BC010839|RPN1|6184|ribophorin I##AK223595|RPN1|6184|ribophorin I##BC007995|RPN1|6184|ribophorin I##CR456742|RPN1|6184|ribophorin I##AK297513|RPN1|6184|ribophorin I##NM_004637|RAB7A|7879|RAB7A, member RAS oncogene family##AK094449|RAB7A|7879|RAB7A, member RAS oncogene family	1.994972	0.705975	CTCF.p2:-77:0.706
chr3	178865986	178866101	reg1002265.p2	9.753	+	TSC_hg19_v1_chr3_-_178789598 NM_022470 NM_152240	-76417	-	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	-76478	-	AF209747 NM_005832	-589491	+	TSC_hg19_v1_chr3_+_178866144 NM_006218 AK292940	195	+	AF160968 NM_014407 BC113851	103366	-	NM_171830	103601	-	NM_022470|ZMAT3|64393|zinc finger, matrin-type 3##NM_152240|ZMAT3|64393|zinc finger, matrin-type 3##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_006218|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##AK292940|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##AF160968|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_014407|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC113851|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171830|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3	0.780068	0.0	denovo_WM_7:12:0.668
chr9	109266223	109266368	reg1002571.p1	9.753	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-809377	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-809442	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-841538	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	359069	+	TSC_hg19_v1_chr9_+_109686439 CR749850	420174	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	779237	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.987184	0.0	denovo_WM_7:30:0.881
chr3	5201296	5201472	reg1002251.p1	9.752	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	-37293	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	-37429	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-180030	+	TSC_hg19_v1_chr3_+_5229344 AK298511	27943	+	BC019088 NM_014674 TSC_hg19_v1_chr3_+_5229369	27979	+	TSC_hg19_v1_chr3_+_5229430 D86967	28049	+	AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##BC019088|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##NM_014674|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##D86967|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	1.877868	0.0	denovo_WM_7:-67:0.499	denovo_WM_7:-88:0.215
chr8	115310826	115311006	reg1001983.p3	9.751	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-861787	-	AB114605 NM_198124	-921535	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-4323950	-	TSC_hg19_v1_chr8_-_116680208 AK304046	1369304	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	1370249	-	TSC_hg19_v1_chr8_-_116681365 AF183810	1370419	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.983415	0.0	denovo_WM_7:30:0.456	denovo_WM_7:31:0.380
chr16	30482253	30482433	reg1002116.p1	9.749	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-25114	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-25161	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-41004	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	1657	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	1729	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	1790	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	1.985674	0.0	denovo_WM_7:-7:0.268	denovo_WM_7:-8:0.695	denovo_WM_7:-23:0.835
chr1	168933762	168933923	reg1002346.p2	9.746	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	-235413	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	-388050	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-420625	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	142127	+	TSC_hg19_v1_chr1_-_169337033 AB209049 BC006983 AK290701 AF153191 AK094513 AK301917 NM_013330 NM_197972	403250	-	NM_003666 AF288161 U79751 AK223533	403381	+	DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AB209049|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##BC006983|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK290701|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AF153191|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK094513|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK301917|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_013330|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_197972|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_003666|BLZF1|8548|basic leucine zipper nuclear factor 1##AF288161|BLZF1|8548|basic leucine zipper nuclear factor 1##U79751|BLZF1|8548|basic leucine zipper nuclear factor 1##AK223533|BLZF1|8548|basic leucine zipper nuclear factor 1	0.995812	0.0	denovo_WM_7:-15:0.815
chr9	96267220	96267337	reg1002205.p2	9.746	+	BC007879 TSC_hg19_v1_chr9_+_96233575	-33781	+	AK056096 NM_198841	-51405	-	TSC_hg19_v1_chr9_+_96214001 BC075701 BC098584 AF214737 AF214738 NM_014612 BC111736 D80005	-53098	+	TSC_hg19_v1_chr9_+_96339042 NM_005392 BC064613 AB014562 BC152437 AL834263	71645	+	TSC_hg19_v1_chr9_-_96717589 AF213356 NM_021570	450304	-	TSC_hg19_v1_chr9_-_96717638 BC064363	450361	-	BC007879|FAM120A|23196|family with sequence similarity 120A##AK056096|FAM120AOS|158293|family with sequence similarity 120A opposite strand##NM_198841|FAM120AOS|158293|family with sequence similarity 120A opposite strand##BC075701|FAM120A|23196|family with sequence similarity 120A##BC098584|FAM120A|23196|family with sequence similarity 120A##AF214737|FAM120A|23196|family with sequence similarity 120A##AF214738|FAM120A|23196|family with sequence similarity 120A##NM_014612|FAM120A|23196|family with sequence similarity 120A##BC111736|FAM120A|23196|family with sequence similarity 120A##D80005|FAM120A|23196|family with sequence similarity 120A##NM_005392|PHF2|5253|PHD finger protein 2##BC064613|PHF2|5253|PHD finger protein 2##AB014562|PHF2|5253|PHD finger protein 2##BC152437|PHF2|5253|PHD finger protein 2##AL834263|PHF2|5253|PHD finger protein 2##AF213356|BARX1|56033|BARX homeobox 1##NM_021570|BARX1|56033|BARX homeobox 1##BC064363|BARX1|56033|BARX homeobox 1	1.737541	0.0	denovo_WM_7:59:0.374	denovo_WM_7:74:0.506
chr18	59850977	59851104	reg1002680.p1	9.745	+	AK096495 NM_173557	-290737	-	AF217289 BC101047 BC101048 BC101049 NM_031891	-693266	+	AK314130 NM_005912	-1811040	-	AF109219 TSC_hg19_v1_chr18_-_59854208	3154	-	TSC_hg19_v1_chr18_-_59854227 BC028363	3181	-	TSC_hg19_v1_chr18_-_59854258 AK315134	3203	-	AK096495|RNF152|220441|ring finger protein 152##NM_173557|RNF152|220441|ring finger protein 152##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF109219|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N##BC028363|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N##AK315134|PIGN|23556|phosphatidylinositol glycan anchor biosynthesis, class N	0.984729	0.035156	denovo_WM_7:42:0.726
chr9	176215	176350	reg1002495.p1	9.736	+	BC089432 NM_207305	-57866	-	AK289708 NM_182905	-146544	-	None	None	None	AY295766 CU675219 HQ258394 AK315855 BC132759 AK297292 TSC_hg19_v1_chr9_-_179017 AY320414 BC009573 AF257330 AY343911 BC013432 AK290648 BC005996 NM_001145355 NM_001145356 NM_018491	2711	-	TSC_hg19_v1_chr9_+_214847 BC043265	38549	+	TSC_hg19_v1_chr9_+_214864 AB191037 NM_203447	38580	+	BC089432|FOXD4|2298|forkhead box D4##NM_207305|FOXD4|2298|forkhead box D4##AK289708|WASH1|100287171|WAS protein family homolog 1##NM_182905|WASH1|100287171|WAS protein family homolog 1##AY295766|CBWD1|55871|COBW domain containing 1##HQ258394|CBWD1|55871|COBW domain containing 1##AK315855|CBWD1|55871|COBW domain containing 1##BC132759|CBWD1|55871|COBW domain containing 1##AK297292|CBWD1|55871|COBW domain containing 1##AY320414|CBWD1|55871|COBW domain containing 1##BC009573|CBWD1|55871|COBW domain containing 1##AF257330|CBWD1|55871|COBW domain containing 1##AY343911|CBWD1|55871|COBW domain containing 1##BC013432|CBWD1|55871|COBW domain containing 1##AK290648|CBWD1|55871|COBW domain containing 1##BC005996|CBWD1|55871|COBW domain containing 1##NM_001145355|CBWD1|55871|COBW domain containing 1##NM_001145356|CBWD1|55871|COBW domain containing 1##NM_018491|CBWD1|55871|COBW domain containing 1##BC043265|DOCK8|81704|dedicator of cytokinesis 8##AB191037|DOCK8|81704|dedicator of cytokinesis 8##NM_203447|DOCK8|81704|dedicator of cytokinesis 8	0.82941	0.217527	CTCF.p2:-28:0.218	denovo_WM_7:58:0.829
chr8	107680142	107680307	reg1002177.p1	9.732	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	-10109	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	-10236	+	AK296561 NM_001198532	-220073	+	AK303695 NM_001198534 NM_001198535 AB075503 AK302844 AK316153 FN650109	58131	+	AF503617 AB463396 AM393063 BC105103 BC105105 AL833422 AL832152 NM_139166 AK092694 AX747674	102220	-	U83508 BC152411 BC152419 D13628 AY055342 NM_001146 NM_001199859 BX648814	829964	-	AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##AK303695|OXR1|55074|oxidation resistance 1##NM_001198534|OXR1|55074|oxidation resistance 1##NM_001198535|OXR1|55074|oxidation resistance 1##AB075503|OXR1|55074|oxidation resistance 1##AK302844|OXR1|55074|oxidation resistance 1##AK316153|OXR1|55074|oxidation resistance 1##FN650109|OXR1|55074|oxidation resistance 1##AF503617|ABRA|137735|actin-binding Rho activating protein##AM393063|ABRA|137735|actin-binding Rho activating protein##BC105103|ABRA|137735|actin-binding Rho activating protein##BC105105|ABRA|137735|actin-binding Rho activating protein##AL833422|ABRA|137735|actin-binding Rho activating protein##AL832152|ABRA|137735|actin-binding Rho activating protein##NM_139166|ABRA|137735|actin-binding Rho activating protein##AK092694|ABRA|137735|actin-binding Rho activating protein##U83508|ANGPT1|284|angiopoietin 1##BC152411|ANGPT1|284|angiopoietin 1##BC152419|ANGPT1|284|angiopoietin 1##D13628|ANGPT1|284|angiopoietin 1##AY055342|ANGPT1|284|angiopoietin 1##NM_001146|ANGPT1|284|angiopoietin 1##NM_001199859|ANGPT1|284|angiopoietin 1##BX648814|ANGPT1|284|angiopoietin 1	0.977178	0.0	denovo_WM_7:-21:0.406	denovo_WM_7:-22:0.362
chr15	69735552	69735732	reg1002146.p1	9.731	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-28280	-	TSC_hg19_v1_chr15_+_69706687 AK310402 EU176620	-28896	+	TSC_hg19_v1_chr15_+_69706649 NM_004856 NM_138555 BC051826 AK308322	-28997	+	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	9579	+	BC015421 TSC_hg19_v1_chr15_-_70341948	606267	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	654585	-	AK056793|LOC145694|145694|uncharacterized LOC145694##AK310402|KIF23|9493|kinesin family member 23##EU176620|KIF23|9493|kinesin family member 23##NM_004856|KIF23|9493|kinesin family member 23##NM_138555|KIF23|9493|kinesin family member 23##BC051826|KIF23|9493|kinesin family member 23##AK308322|KIF23|9493|kinesin family member 23##NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	1.989914	0.0	denovo_WM_7:31:0.972	denovo_WM_7:46:0.982
chr21	38451776	38451916	reg1003067.p1	9.730	+	TSC_hg19_v1_chr21_+_38445570 AK297921 BC092466 NM_001001894 AK291992 AK299991	-6229	+	AB035742 AB037162 TSC_hg19_v1_chr21_-_38445400 NM_153682	-6423	-	AB039659 BT007053 AK316609 AK026311 AK314457 AB037163 AB035745 AF237812 AK304656 NM_153681 AB035744 TSC_hg19_v1_chr21_-_38445363 AB037164 AB035743 BC005180 BC011007 AF216305	-6752	-	D83077 NM_003316	3400	+	BC029827 TSC_hg19_v1_chr21_+_38593064	141213	+	TSC_hg19_v1_chr21_-_38639617 AK316460 AK299662	187762	-	AK297921|TTC3|7267|tetratricopeptide repeat domain 3##BC092466|TTC3|7267|tetratricopeptide repeat domain 3##NM_001001894|TTC3|7267|tetratricopeptide repeat domain 3##AK291992|TTC3|7267|tetratricopeptide repeat domain 3##AK299991|TTC3|7267|tetratricopeptide repeat domain 3##AB035742|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB037162|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##NM_153682|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB039659|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##BT007053|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AK316609|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AK026311|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AK314457|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB037163|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB035745|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AF237812|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AK304656|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##NM_153681|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB035744|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB037164|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB035743|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##BC005180|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##BC011007|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AF216305|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##D83077|TTC3|7267|tetratricopeptide repeat domain 3##NM_003316|TTC3|7267|tetratricopeptide repeat domain 3##BC029827|DSCR9|257203|Down syndrome critical region gene 9 (non-protein coding)##AK316460|DSCR3|10311|Down syndrome critical region gene 3##AK299662|DSCR3|10311|Down syndrome critical region gene 3	1.994014	0.0	denovo_WM_7:-1:0.312	denovo_WM_7:-2:0.250	denovo_WM_7:-19:0.259	denovo_WM_7:-20:0.321
chr7	92260673	92260830	reg1002426.p1	9.729	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-41053	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-41109	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-102645	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	202016	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	202469	-	AK313491 TSC_hg19_v1_chr7_-_92465884	205147	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.0	0.0	
chr1	228666728	228666882	reg1002108.p2	9.725	+	AK091220 NM_175055 BC100855 BC100856 BC100857 BC100858 BC137467 BC137468	-20998	+	AB590632 BC082269 BC001193 NM_033445 AK311930 TSC_hg19_v1_chr1_-_228645575	-21259	-	BC069079 CR542013 NM_003493 AK312217 BC101837 BC101839	-53756	-	TSC_hg19_v1_chr1_+_228675088 NM_001010858 BC012758	8270	+	AK055963 TSC_hg19_v1_chr1_+_228783500	116626	+	TSC_hg19_v1_chr1_+_228870806 NM_021205 AF211836	204039	+	AK091220|HIST3H2BB|128312|histone cluster 3, H2bb##NM_175055|HIST3H2BB|128312|histone cluster 3, H2bb##BC100855|HIST3H2BB|128312|histone cluster 3, H2bb##BC100856|HIST3H2BB|128312|histone cluster 3, H2bb##BC100857|HIST3H2BB|128312|histone cluster 3, H2bb##BC100858|HIST3H2BB|128312|histone cluster 3, H2bb##BC137467|HIST3H2BB|128312|histone cluster 3, H2bb##BC137468|HIST3H2BB|128312|histone cluster 3, H2bb##BC082269|HIST3H2A|92815|histone cluster 3, H2a##BC001193|HIST3H2A|92815|histone cluster 3, H2a##NM_033445|HIST3H2A|92815|histone cluster 3, H2a##AK311930|HIST3H2A|92815|histone cluster 3, H2a##BC069079|HIST3H3|8290|histone cluster 3, H3##CR542013|HIST3H3|8290|histone cluster 3, H3##NM_003493|HIST3H3|8290|histone cluster 3, H3##AK312217|HIST3H3|8290|histone cluster 3, H3##BC101837|HIST3H3|8290|histone cluster 3, H3##BC101839|HIST3H3|8290|histone cluster 3, H3##NM_001010858|RNF187|149603|ring finger protein 187##BC012758|RNF187|149603|ring finger protein 187##AK055963|DUSP5P|574029|dual specificity phosphatase 5 pseudogene##NM_021205|RHOU|58480|ras homolog gene family, member U##AF211836|RHOU|58480|ras homolog gene family, member U	0.980773	0.0	denovo_WM_7:4:0.312	denovo_WM_7:5:0.312	denovo_WM_7:6:0.312
chr16	2178762	2178942	reg1002373.p1	9.720	+	AB209025 TSC_hg19_v1_chr16_-_2159898	-18974	-	TSC_hg19_v1_chr16_+_2128185 AK125096	-50640	+	TSC_hg19_v1_chr16_+_2097985 AB210000 NM_000548 NM_001077183 NM_001114382 AK294548 AK295672 AK299343 BC150300 BX647816	-80841	+	U24497 TSC_hg19_v1_chr16_-_2185898 L33243 NM_000296 NM_001009944	7047	-	TSC_hg19_v1_chr16_+_2198609 AY646153 BC066913 NM_014353	19776	+	TSC_hg19_v1_chr16_+_2198707 BC007681	19893	+	AB209025|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AK125096|TSC2|7249|tuberous sclerosis 2##AB210000|TSC2|7249|tuberous sclerosis 2##NM_000548|TSC2|7249|tuberous sclerosis 2##NM_001077183|TSC2|7249|tuberous sclerosis 2##NM_001114382|TSC2|7249|tuberous sclerosis 2##AK295672|TSC2|7249|tuberous sclerosis 2##AK299343|TSC2|7249|tuberous sclerosis 2##BC150300|TSC2|7249|tuberous sclerosis 2##BX647816|TSC2|7249|tuberous sclerosis 2##U24497|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##L33243|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_000296|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_001009944|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AY646153|RAB26|25837|RAB26, member RAS oncogene family##BC066913|RAB26|25837|RAB26, member RAS oncogene family##NM_014353|RAB26|25837|RAB26, member RAS oncogene family##BC007681|RAB26|25837|RAB26, member RAS oncogene family	0.390985	0.0	denovo_WM_7:25:0.313
chr5	162888758	162888892	reg1002351.p1	9.720	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-1230	+	AK311957 TSC_hg19_v1_chr5_-_162887119 BC017934 BX538290 NM_145266	-1692	-	AB528197 AM392736 AM393438 FJ215684 AK094647 TSC_hg19_v1_chr5_-_162887097	-1747	-	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	41463	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	43818	+	HE578282 HE578283 NM_001122679	3823017	+	NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK311957|NUDCD2|134492|NudC domain containing 2##BC017934|NUDCD2|134492|NudC domain containing 2##BX538290|NUDCD2|134492|NudC domain containing 2##NM_145266|NUDCD2|134492|NudC domain containing 2##AM392736|NUDCD2|134492|NudC domain containing 2##AM393438|NUDCD2|134492|NudC domain containing 2##FJ215684|NUDCD2|134492|NudC domain containing 2##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)	0.969141	0.0	denovo_WM_7:-26:0.638	denovo_WM_7:-27:0.275
chr14	93029893	93030036	reg1002347.p1	9.719	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-50005	+	NM_153646 AF520704 AF520705 BC069653	-239788	+	AK295059 NM_153647	-240428	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	88672	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	88859	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	184995	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.148175	0.0	
chr6	99963495	99963656	reg1001858.p1	9.715	+	TSC_hg19_v1_chr6_-_99963309 BC005991	-265	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	-306	-	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	-90408	-	TSC_hg19_v1_chr6_+_99968921 BX647075 NM_001195131	5324	+	CU679631 CU691126 AB528579 AB125137 BC050726 TSC_hg19_v1_chr6_-_100016505 AK223247 M74091 AK291914 AK222768 BC026272 BC030159 BC056153	52882	-	TSC_hg19_v1_chr6_-_100016537 BC010135 AK298558 BC041123 NM_001013399 NM_005190	53028	-	BC005991|USP45|85015|ubiquitin specific peptidase 45##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45##BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX647075|LOC100130890|100130890|uncharacterized LOC100130890##NM_001195131|LOC100130890|100130890|uncharacterized LOC100130890##AB125137|CCNC|892|cyclin C##BC050726|CCNC|892|cyclin C##AK223247|CCNC|892|cyclin C##M74091|CCNC|892|cyclin C##AK291914|CCNC|892|cyclin C##AK222768|CCNC|892|cyclin C##BC026272|CCNC|892|cyclin C##BC030159|CCNC|892|cyclin C##BC056153|CCNC|892|cyclin C##BC010135|CCNC|892|cyclin C##AK298558|CCNC|892|cyclin C##BC041123|CCNC|892|cyclin C##NM_001013399|CCNC|892|cyclin C##NM_005190|CCNC|892|cyclin C	0.995245	0.0	
chr6_qbl_hap6	3840496	3840616	reg1002290.p1	9.715	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999517	0.0	denovo_WM_7:12:0.518	denovo_WM_7:13:0.463
chr13	95769457	95769625	reg1002685.p1	9.714	+	X65666 X71136 AB464716 NM_007084	-405223	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-515439	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-521045	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	184171	-	NM_001160100 NM_182848 AK055855	316313	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	435433	+	X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10	0.999762	0.010473	denovo_WM_7:-21:0.298	denovo_WM_7:-22:0.298	denovo_WM_7:-23:0.298
chr4	184659640	184659813	reg1002332.p2	9.713	+	TSC_hg19_v1_chr4_+_184580539 BC139745	-79215	+	NM_021942 NM_199053 TSC_hg19_v1_chr4_+_184580445 AL833571 AK096345 BX648499 BX647127 BX538044 BC040530 BC051724	-79277	+	CU688324 BC107432 TSC_hg19_v1_chr4_-_184580305 AK021702 AK293274 AK315515 BC017472 BC067752 NM_152682	-79484	-	TSC_hg19_v1_chr4_+_184826513 AB037813 BC146754 NM_020225	166780	+	TSC_hg19_v1_chr4_+_184827807 AK289840	168094	+	TSC_hg19_v1_chr4_+_184827885 AB384196	168185	+	BC139745|C4orf41|60684|chromosome 4 open reading frame 41##NM_021942|C4orf41|60684|chromosome 4 open reading frame 41##NM_199053|C4orf41|60684|chromosome 4 open reading frame 41##AL833571|C4orf41|60684|chromosome 4 open reading frame 41##AK096345|C4orf41|60684|chromosome 4 open reading frame 41##BX648499|C4orf41|60684|chromosome 4 open reading frame 41##BX647127|C4orf41|60684|chromosome 4 open reading frame 41##BX538044|C4orf41|60684|chromosome 4 open reading frame 41##BC040530|C4orf41|60684|chromosome 4 open reading frame 41##BC051724|C4orf41|60684|chromosome 4 open reading frame 41##BC107432|RWDD4|201965|RWD domain containing 4##AK021702|RWDD4|201965|RWD domain containing 4##AK293274|RWDD4|201965|RWD domain containing 4##AK315515|RWDD4|201965|RWD domain containing 4##BC017472|RWDD4|201965|RWD domain containing 4##BC067752|RWDD4|201965|RWD domain containing 4##NM_152682|RWDD4|201965|RWD domain containing 4##AB037813|STOX2|56977|storkhead box 2##BC146754|STOX2|56977|storkhead box 2##NM_020225|STOX2|56977|storkhead box 2##AK289840|STOX2|56977|storkhead box 2	0.999494	0.0	
chr2	192482462	192482627	reg1002243.p2	9.712	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-372446	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-466237	-	TSC_hg19_v1_chr2_-_192015965 NM_003151	-466585	-	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	60318	+	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	229194	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	229427	-	NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##NM_003151|STAT4|6775|signal transducer and activator of transcription 4##NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response	0.0	0.0	
chr10	52257549	52257649	reg1001968.p1	9.711	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-249259	-	NM_018232	-419714	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-429877	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	126104	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	242111	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	387794	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.994422	0.0	denovo_WM_7:-39:0.982
chr5	159671558	159671664	reg1001861.p2	9.707	+	NM_001445 X90908 U19869 CU692652	-15112	+	NM_001040442 AB528665	-45531	+	DQ132786 NM_001130958	-57238	+	AK294000 TSC_hg19_v1_chr5_-_159739572 BC035871 NM_024565 AK302823	67933	-	TSC_hg19_v1_chr5_-_159797619 BC054506 BC011699 AF329836 AB590457 AY358839 NM_031908	126021	-	BC032603 TSC_hg19_v1_chr5_-_159827053 NM_022090	155472	-	NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##AK294000|CCNJL|79616|cyclin J-like##BC035871|CCNJL|79616|cyclin J-like##NM_024565|CCNJL|79616|cyclin J-like##AK302823|CCNJL|79616|cyclin J-like##BC054506|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC011699|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AF329836|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AY358839|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##NM_031908|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC032603|C5orf54|63920|chromosome 5 open reading frame 54##NM_022090|C5orf54|63920|chromosome 5 open reading frame 54	0.998694	0.0	denovo_WM_7:22:0.295	denovo_WM_7:23:0.295	denovo_WM_7:24:0.295
chr10	102831076	102831209	reg1001857.p1	9.706	+	TSC_hg19_v1_chr10_+_102821745 BC007758 AY359087 AK225949 AK172862	-9483	+	TSC_hg19_v1_chr10_+_102820998 AK172864 NM_030929	-10164	+	TSC_hg19_v1_chr10_+_102792167 AK299405 BC000124	-38953	+	BC019674 NM_001085398	59760	-	BC130530 NM_001195517 NM_005521 S38742 M75952 AB464289	60036	+	BC136321 BC069156 NM_006562 X90828	157560	-	BC007758|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AY359087|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK225949|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK172862|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK172864|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##NM_030929|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK299405|SFXN3|81855|sideroflexin 3##BC000124|SFXN3|81855|sideroflexin 3##BC019674|TLX1NB|100038246|TLX1 neighbor##NM_001085398|TLX1NB|100038246|TLX1 neighbor##BC130530|TLX1|3195|T-cell leukemia homeobox 1##NM_001195517|TLX1|3195|T-cell leukemia homeobox 1##NM_005521|TLX1|3195|T-cell leukemia homeobox 1##S38742|TLX1|3195|T-cell leukemia homeobox 1##M75952|TLX1|3195|T-cell leukemia homeobox 1##BC136321|LBX1|10660|ladybird homeobox 1##BC069156|LBX1|10660|ladybird homeobox 1##NM_006562|LBX1|10660|ladybird homeobox 1##X90828|LBX1|10660|ladybird homeobox 1	1.007464	0.0	denovo_WM_7:0:0.405	denovo_WM_7:-1:0.401
chr17	41918373	41918541	reg1002124.p2	9.705	+	TSC_hg19_v1_chr17_-_41910537 AK309045 AK299535 AK313045 AK311368 BC035833 BC025743 BC047017 NM_001932	-7831	-	BC056865 TSC_hg19_v1_chr17_-_41910234	-8246	-	BC054872 BC070324 NM_001136483 BC146971 AK125817	-60643	+	AK298112 AK309938 NM_001168322 NM_001168323 NM_001168324 NM_145273 AF427619 AF427620 BC025395 AY358364 CU692992	6092	+	TSC_hg19_v1_chr17_-_41977993 AK299321 CR936598	59523	-	AL136554 X82895 TSC_hg19_v1_chr17_-_41984895 AK299518 AK223560 AK294564 AK299286	66438	-	AK309045|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##AK299535|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##AK313045|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##AK311368|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##BC035833|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##BC025743|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##BC047017|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##NM_001932|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##BC056865|MPP3|4356|membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)##BC054872|C17orf105|284067|chromosome 17 open reading frame 105##BC070324|C17orf105|284067|chromosome 17 open reading frame 105##NM_001136483|C17orf105|284067|chromosome 17 open reading frame 105##BC146971|C17orf105|284067|chromosome 17 open reading frame 105##AK125817|C17orf105|284067|chromosome 17 open reading frame 105##AK298112|CD300LG|146894|CD300 molecule-like family member g##AK309938|CD300LG|146894|CD300 molecule-like family member g##NM_001168322|CD300LG|146894|CD300 molecule-like family member g##NM_001168323|CD300LG|146894|CD300 molecule-like family member g##NM_001168324|CD300LG|146894|CD300 molecule-like family member g##NM_145273|CD300LG|146894|CD300 molecule-like family member g##AF427619|CD300LG|146894|CD300 molecule-like family member g##AF427620|CD300LG|146894|CD300 molecule-like family member g##BC025395|CD300LG|146894|CD300 molecule-like family member g##AY358364|CD300LG|146894|CD300 molecule-like family member g##AK299321|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)##CR936598|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)##AL136554|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)##AK299518|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)##AK223560|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)##AK294564|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)##AK299286|MPP2|4355|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	0.99938	0.0	denovo_WM_7:-2:0.739
chr17	39975197	39975337	reg1002592.p1	9.704	+	TSC_hg19_v1_chr17_+_39969205 BX537452 AL832985 BC016467 AK092042 AX747329 AK172811 AK296107 DQ894994 EU831946 EU832041 AB463638 AF337909	-6022	+	AB045981 TSC_hg19_v1_chr17_+_39969204	-6065	+	AK092708 AX747682 NM_021939	-6306	+	CU680794 BC013742 TSC_hg19_v1_chr17_-_39992482 BC014132 BC067788 BC016971	17084	-	TSC_hg19_v1_chr17_-_39992513 NM_052935	17266	-	NM_152467 BC067753 AY495339 AK301797 AK302141 AK057224	18794	+	BX537452|FKBP10|60681|FK506 binding protein 10, 65 kDa##AL832985|FKBP10|60681|FK506 binding protein 10, 65 kDa##BC016467|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK092042|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK172811|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK296107|FKBP10|60681|FK506 binding protein 10, 65 kDa##DQ894994|FKBP10|60681|FK506 binding protein 10, 65 kDa##EU831946|FKBP10|60681|FK506 binding protein 10, 65 kDa##EU832041|FKBP10|60681|FK506 binding protein 10, 65 kDa##AF337909|FKBP10|60681|FK506 binding protein 10, 65 kDa##AB045981|FKBP10|60681|FK506 binding protein 10, 65 kDa##AK092708|FKBP10|60681|FK506 binding protein 10, 65 kDa##NM_021939|FKBP10|60681|FK506 binding protein 10, 65 kDa##BC013742|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC014132|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC067788|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC016971|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##NM_052935|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##NM_152467|KLHL10|317719|kelch-like 10 (Drosophila)##BC067753|KLHL10|317719|kelch-like 10 (Drosophila)##AY495339|KLHL10|317719|kelch-like 10 (Drosophila)##AK301797|KLHL10|317719|kelch-like 10 (Drosophila)##AK302141|KLHL10|317719|kelch-like 10 (Drosophila)##AK057224|KLHL10|317719|kelch-like 10 (Drosophila)	0.992048	0.0	
chr7	131231474	131231619	reg1001931.p2	9.704	+	TSC_hg19_v1_chr7_+_131012652 BC067825 AF047489 AK310452 AK002024	-218907	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	-218940	+	AK294384 NM_001145354	-436692	+	BC042466 TSC_hg19_v1_chr7_-_131241369 U97519 AK223573 AK055816 NM_001018111 NM_005397	9817	-	TSC_hg19_v1_chr7_-_131833385 AL834504	601849	-	AL137352 AY358850 TSC_hg19_v1_chr7_-_132193002	961374	-	BC067825|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AF047489|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK310452|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK002024|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC042466|PODXL|5420|podocalyxin-like##U97519|PODXL|5420|podocalyxin-like##AK223573|PODXL|5420|podocalyxin-like##AK055816|PODXL|5420|podocalyxin-like##NM_001018111|PODXL|5420|podocalyxin-like##NM_005397|PODXL|5420|podocalyxin-like##AL834504|PLXNA4|91584|plexin A4##AL137352|PLXNA4|91584|plexin A4##AY358850|PLXNA4|91584|plexin A4	1.237345	0.55303	CTCF.p2:8:0.553	denovo_WM_7:-40:0.256	denovo_WM_7:-55:0.246
chr7	74180807	74180938	reg1001744.p1	9.704	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-108750	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-108828	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-108851	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	7480	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	86967	-	TSC_hg19_v1_chr7_-_74306679 BC002581	125803	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.991743	0.0	denovo_WM_7:-28:0.331	denovo_WM_7:-29:0.331	denovo_WM_7:-30:0.331
chr5	58676185	58676358	reg1002105.p1	9.699	+	AB528028 AF536977 NM_001197219 TSC_hg19_v1_chr5_-_58652809	-23528	-	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	-104341	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	-340893	-	U50159 NM_006203 L20970	206028	-	AJ250854 BT007398 TSC_hg19_v1_chr5_-_59064363	388077	-	NM_001197218 AF012073 BC008390 TSC_hg19_v1_chr5_-_59064472	388184	-	AF536977|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197219|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50159|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_006203|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##L20970|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AJ250854|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##BT007398|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197218|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012073|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##BC008390|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	1.796705	0.0	denovo_WM_7:-1:0.773	denovo_WM_7:-45:0.237	denovo_WM_7:-46:0.237	denovo_WM_7:-47:0.237	denovo_WM_7:-48:0.237
chr19	38397301	38397480	reg1001626.p1	9.698	+	AK302913 AY026504 AK128826 NM_031951	-116	-	TSC_hg19_v1_chr19_+_38308124 AK092337	-89251	+	TSC_hg19_v1_chr19_+_38307973 AK309685	-89381	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	467	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	522	+	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	317445	-	AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##AK092337|LOC644554|644554|uncharacterized LOC644554##AK309685|LOC644554|644554|uncharacterized LOC644554##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1	0.991022	0.0	denovo_WM_7:-17:0.382	denovo_WM_7:-19:0.381
chr19	7242860	7243040	reg1000255.p2	9.698	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-143399	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-173235	+	AK315405 NM_001044387 NM_001044388 NM_024341	-173488	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	51010	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	217057	+	TSC_hg19_v1_chr19_+_7460061 AB011093	217127	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.98247	0.0	denovo_WM_7:-80:0.884
chr19	49018151	49018298	reg1001546.p1	9.696	+	AB067470 NM_001080434	-1793	-	AB384647 TSC_hg19_v1_chr19_-_49014849	-3384	-	TSC_hg19_v1_chr19_+_48972625 AB209573 BC038713 AK292405 U70728 AK299590 BC004361 AB528907 DQ892565 DQ896856 X99753	-45555	+	TSC_hg19_v1_chr19_+_49055432 NM_177973 U92315 BC034694 CU689942	37240	+	NM_004605	60768	+	AF353721 NM_133498 AY358387 BC047334	91785	+	AB067470|LMTK3|114783|lemur tyrosine kinase 3##NM_001080434|LMTK3|114783|lemur tyrosine kinase 3##AB209573|CYTH2|9266|cytohesin 2##BC038713|CYTH2|9266|cytohesin 2##AK292405|CYTH2|9266|cytohesin 2##U70728|CYTH2|9266|cytohesin 2##AK299590|CYTH2|9266|cytohesin 2##BC004361|CYTH2|9266|cytohesin 2##DQ892565|CYTH2|9266|cytohesin 2##DQ896856|CYTH2|9266|cytohesin 2##X99753|CYTH2|9266|cytohesin 2##NM_177973|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##U92315|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##BC034694|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##NM_004605|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##AF353721|SPACA4|171169|sperm acrosome associated 4##NM_133498|SPACA4|171169|sperm acrosome associated 4##AY358387|SPACA4|171169|sperm acrosome associated 4##BC047334|SPACA4|171169|sperm acrosome associated 4	1.987298	0.0	
chr2	120188675	120188814	reg1002307.p1	9.695	+	M14200 NM_001079863 AM000001	-63547	+	FM213127 NM_001178017	-63916	+	TSC_hg19_v1_chr2_+_120124662 BC062996	-64085	+	TSC_hg19_v1_chr2_+_120189433 NM_183240	666	+	AY462218 CU690190 AB527596 U20178 U28281 TSC_hg19_v1_chr2_-_120281970	93141	-	TSC_hg19_v1_chr2_-_120282018 AK314638 NM_002980	93275	-	M14200|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001079863|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##AM000001|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213127|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001178017|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##BC062996|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_183240|TMEM37|140738|transmembrane protein 37##AY462218|SCTR|6344|secretin receptor##U20178|SCTR|6344|secretin receptor##U28281|SCTR|6344|secretin receptor##AK314638|SCTR|6344|secretin receptor##NM_002980|SCTR|6344|secretin receptor	0.982242	0.0	denovo_WM_7:-11:0.797
chr5	80721447	80721604	reg1002160.p1	9.694	+	BC075011 BC075010 AK122960 AB078619 BC089437 NM_130767 TSC_hg19_v1_chr5_-_80690052	-31523	-	NM_001131035 NM_001131036 NM_032280 AL512712 TSC_hg19_v1_chr5_+_80597439 BC032736 AK314160 BC022799 BC014841	-124086	+	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	-124153	-	TSC_hg19_v1_chr5_-_81046929 AB528651 CU677799 DQ891620 DQ894812 EU176592 EU831646 EU831730 AK293544 AK074537 AK294864 AK297494 AF161465 AF077048 AK299858 AK312337 CR936787 AL080076 BC017020	325374	-	TSC_hg19_v1_chr5_-_81046990 NM_012446	325583	-	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	546320	+	BC075011|ACOT12|134526|acyl-CoA thioesterase 12##BC075010|ACOT12|134526|acyl-CoA thioesterase 12##AK122960|ACOT12|134526|acyl-CoA thioesterase 12##AB078619|ACOT12|134526|acyl-CoA thioesterase 12##BC089437|ACOT12|134526|acyl-CoA thioesterase 12##NM_130767|ACOT12|134526|acyl-CoA thioesterase 12##NM_001131035|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_001131036|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_032280|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AL512712|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC032736|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK314160|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC022799|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC014841|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067##DQ891620|SSBP2|23635|single-stranded DNA binding protein 2##DQ894812|SSBP2|23635|single-stranded DNA binding protein 2##EU176592|SSBP2|23635|single-stranded DNA binding protein 2##EU831646|SSBP2|23635|single-stranded DNA binding protein 2##EU831730|SSBP2|23635|single-stranded DNA binding protein 2##AK293544|SSBP2|23635|single-stranded DNA binding protein 2##AK074537|SSBP2|23635|single-stranded DNA binding protein 2##AK294864|SSBP2|23635|single-stranded DNA binding protein 2##AK297494|SSBP2|23635|single-stranded DNA binding protein 2##AF161465|SSBP2|23635|single-stranded DNA binding protein 2##AF077048|SSBP2|23635|single-stranded DNA binding protein 2##AK299858|SSBP2|23635|single-stranded DNA binding protein 2##AK312337|SSBP2|23635|single-stranded DNA binding protein 2##CR936787|SSBP2|23635|single-stranded DNA binding protein 2##AL080076|SSBP2|23635|single-stranded DNA binding protein 2##BC017020|SSBP2|23635|single-stranded DNA binding protein 2##NM_012446|SSBP2|23635|single-stranded DNA binding protein 2##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)	0.737667	0.199736	denovo_WM_7:24:0.530
chr7	99963487	99963611	reg1001870.p1	9.692	+	AJ400845 NM_178238 AF161081	-7918	+	TSC_hg19_v1_chr7_+_99933808 AL834317	-29727	+	TSC_hg19_v1_chr7_+_99933747 AK056412 AK310352	-29794	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	7547	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	7656	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	62753	-	AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AL834317|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK056412|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK310352|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1	0.998611	0.0	
chr16	21311834	21312014	reg1001392.p1	9.691	+	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-22276	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-22331	-	AK096138 NM_145865 TSC_hg19_v1_chr16_+_21245019 BC111784 BC112368	-66904	+	BX648477 NM_001014444 NM_001888	2463	-	BC036263 NM_130464	124733	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	219828	-	BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##AK096138|ANKS4B|257629|ankyrin repeat and sterile alpha motif domain containing 4B##NM_145865|ANKS4B|257629|ankyrin repeat and sterile alpha motif domain containing 4B##BC111784|ANKS4B|257629|ankyrin repeat and sterile alpha motif domain containing 4B##BC112368|ANKS4B|257629|ankyrin repeat and sterile alpha motif domain containing 4B##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2	1.969882	0.0	denovo_WM_7:-62:0.774	denovo_WM_7:-81:0.455	denovo_WM_7:-82:0.455
chr3	171779800	171779980	reg1001829.p2	9.688	+	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-21553	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-22432	+	TSC_hg19_v1_chr3_+_171757437 AK127826	-22456	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	386333	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	461288	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	649000	-	AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1	0.0	0.0	
chr2	177800569	177800699	reg1002125.p1	9.686	+	BC013438 TSC_hg19_v1_chr2_-_177502718	-297946	-	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-666395	+	AF241528 NM_024501 TSC_hg19_v1_chr2_+_177053395 AK314120 BC014477 BC028190 DQ892237 DQ895437 AB464583	-747218	+	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	276840	+	AK311688 NM_001145412 NM_001145413	327937	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	328742	-	BC013438|LOC375295|375295|uncharacterized LOC375295##NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AF241528|HOXD1|3231|homeobox D1##NM_024501|HOXD1|3231|homeobox D1##AK314120|HOXD1|3231|homeobox D1##BC014477|HOXD1|3231|homeobox D1##BC028190|HOXD1|3231|homeobox D1##DQ892237|HOXD1|3231|homeobox D1##DQ895437|HOXD1|3231|homeobox D1##NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	1.010682	0.0	denovo_WM_7:40:0.251
chr14	104157738	104157867	reg1001966.p2	9.682	+	TSC_hg19_v1_chr14_+_104095547 NM_001130107 NM_005552 NM_182923 AK294508 BC008881 L04733 AF527736 AY180164	-62151	+	TSC_hg19_v1_chr14_+_104029325 AK299527 NM_032374 AK223092 AK223103 BC007412	-128491	+	TSC_hg19_v1_chr14_-_104028984 AB020680 NM_001015048	-128741	-	AK124498 TSC_hg19_v1_chr14_-_104178577	20706	-	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	23981	-	TSC_hg19_v1_chr14_+_104182144 NM_001198953 NM_024071 BC005999 AK057816 BC001130 AY395756 AK290519 BX248261	24314	+	NM_001130107|KLC1|3831|kinesin light chain 1##NM_005552|KLC1|3831|kinesin light chain 1##NM_182923|KLC1|3831|kinesin light chain 1##AK294508|KLC1|3831|kinesin light chain 1##BC008881|KLC1|3831|kinesin light chain 1##L04733|KLC1|3831|kinesin light chain 1##AF527736|KLC1|3831|kinesin light chain 1##AY180164|KLC1|3831|kinesin light chain 1##NM_032374|APOPT1|84334|apoptogenic 1##AK223092|APOPT1|84334|apoptogenic 1##AK223103|APOPT1|84334|apoptogenic 1##BC007412|APOPT1|84334|apoptogenic 1##AB020680|BAG5|9529|BCL2-associated athanogene 5##NM_001015048|BAG5|9529|BCL2-associated athanogene 5##AK124498|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001198953|ZFYVE21|79038|zinc finger, FYVE domain containing 21##NM_024071|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC005999|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK057816|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC001130|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AY395756|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK290519|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BX248261|ZFYVE21|79038|zinc finger, FYVE domain containing 21	1.79112	0.0	denovo_WM_7:0:0.386	denovo_WM_7:0:0.409	denovo_WM_7:14:0.399	denovo_WM_7:15:0.406
chr10	92639924	92640062	reg1002212.p2	9.679	+	TSC_hg19_v1_chr10_+_92631730 NM_001104546 NM_006413 AL833628 AK296196 U77665 AK312900 AK225532 DQ893181 DQ896488	-8271	+	TSC_hg19_v1_chr10_+_92631241 BC006991	-8736	+	BC047526 NM_000872 NM_019859 NM_019860 TSC_hg19_v1_chr10_-_92617758	-22260	-	AB528537 DQ892852 DQ896099 AY903446 BC005191 AK290960 BC018667 TSC_hg19_v1_chr10_-_92680845	40823	-	X83703 NM_014391	41035	-	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	282769	+	NM_001104546|RPP30|10556|ribonuclease P/MRP 30kDa subunit##NM_006413|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AL833628|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AK296196|RPP30|10556|ribonuclease P/MRP 30kDa subunit##U77665|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AK312900|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AK225532|RPP30|10556|ribonuclease P/MRP 30kDa subunit##DQ893181|RPP30|10556|ribonuclease P/MRP 30kDa subunit##DQ896488|RPP30|10556|ribonuclease P/MRP 30kDa subunit##BC006991|RPP30|10556|ribonuclease P/MRP 30kDa subunit##BC047526|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_000872|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019859|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019860|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##DQ892852|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ896099|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AY903446|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC005191|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AK290960|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC018667|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##X83703|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_014391|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5	0.996106	0.818958	denovo_WM_7:-19:0.928	CTCF.p2:41:0.819
chr3	157335965	157336093	reg1001806.p1	9.679	+	NM_001099777 NM_001130001 NM_001130002 NM_001243729 BC126187 BC126189 BC144066 BC029129 BC010062	-74847	+	BC078142 BC057999 NM_001167915 NM_001167916	-114641	-	BC111017 AB051479 NM_001167911 NM_001167912	-114898	-	TSC_hg19_v1_chr3_-_157823531 AK309293	487510	-	HQ258019 AJ002367 TSC_hg19_v1_chr3_-_157823847 BC008829 NM_001163678 NM_003030 NM_006884	487854	-	TSC_hg19_v1_chr3_+_157827910 AK290334 BC006982 NM_016625 AF208853 BC010357	491862	+	NM_001099777|C3orf55|152078|chromosome 3 open reading frame 55##NM_001130001|C3orf55|152078|chromosome 3 open reading frame 55##NM_001130002|C3orf55|152078|chromosome 3 open reading frame 55##NM_001243729|C3orf55|152078|chromosome 3 open reading frame 55##BC126187|C3orf55|152078|chromosome 3 open reading frame 55##BC126189|C3orf55|152078|chromosome 3 open reading frame 55##BC144066|C3orf55|152078|chromosome 3 open reading frame 55##BC029129|C3orf55|152078|chromosome 3 open reading frame 55##BC010062|C3orf55|152078|chromosome 3 open reading frame 55##BC078142|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##BC057999|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##NM_001167915|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##NM_001167916|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##BC111017|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##AB051479|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##NM_001167911|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##NM_001167912|VEPH1|79674|ventricular zone expressed PH domain homolog 1 (zebrafish)##HQ258019|SHOX2|6474|short stature homeobox 2##AJ002367|SHOX2|6474|short stature homeobox 2##BC008829|SHOX2|6474|short stature homeobox 2##NM_001163678|SHOX2|6474|short stature homeobox 2##NM_003030|SHOX2|6474|short stature homeobox 2##NM_006884|SHOX2|6474|short stature homeobox 2##AK290334|RSRC1|51319|arginine/serine-rich coiled-coil 1##BC006982|RSRC1|51319|arginine/serine-rich coiled-coil 1##NM_016625|RSRC1|51319|arginine/serine-rich coiled-coil 1##AF208853|RSRC1|51319|arginine/serine-rich coiled-coil 1##BC010357|RSRC1|51319|arginine/serine-rich coiled-coil 1	0.998688	0.434458	CTCF.p2:83:0.434
chr5	34695874	34696005	reg1002474.p2	9.679	+	AY354204 NM_001145523	-8276	+	AK308306 NM_001145521 NM_001145525 BC028681 AY317139	-11305	+	AB037755 NM_001145520 TSC_hg19_v1_chr5_+_34656599	-39342	+	AK058168 NM_144725 AK293829 BC032871 BC057775 AK097766	143358	+	AF074717 TSC_hg19_v1_chr5_-_34915671 BC009804 AJ004974 AJ004975 BC006837 AF073524 AF076841 AF090170 AF084512 AF084513 AF011905	219691	-	TSC_hg19_v1_chr5_-_34915716 AK002112 NM_002853	219807	-	AY354204|RAI14|26064|retinoic acid induced 14##NM_001145523|RAI14|26064|retinoic acid induced 14##AK308306|RAI14|26064|retinoic acid induced 14##NM_001145521|RAI14|26064|retinoic acid induced 14##NM_001145525|RAI14|26064|retinoic acid induced 14##BC028681|RAI14|26064|retinoic acid induced 14##AY317139|RAI14|26064|retinoic acid induced 14##AB037755|RAI14|26064|retinoic acid induced 14##NM_001145520|RAI14|26064|retinoic acid induced 14##AK058168|TTC23L|153657|tetratricopeptide repeat domain 23-like##NM_144725|TTC23L|153657|tetratricopeptide repeat domain 23-like##AK293829|TTC23L|153657|tetratricopeptide repeat domain 23-like##BC032871|TTC23L|153657|tetratricopeptide repeat domain 23-like##BC057775|TTC23L|153657|tetratricopeptide repeat domain 23-like##AK097766|TTC23L|153657|tetratricopeptide repeat domain 23-like##AF074717|RAD1|5810|RAD1 homolog (S. pombe)##BC009804|RAD1|5810|RAD1 homolog (S. pombe)##AJ004974|RAD1|5810|RAD1 homolog (S. pombe)##AJ004975|RAD1|5810|RAD1 homolog (S. pombe)##BC006837|RAD1|5810|RAD1 homolog (S. pombe)##AF073524|RAD1|5810|RAD1 homolog (S. pombe)##AF076841|RAD1|5810|RAD1 homolog (S. pombe)##AF090170|RAD1|5810|RAD1 homolog (S. pombe)##AF084512|RAD1|5810|RAD1 homolog (S. pombe)##AF084513|RAD1|5810|RAD1 homolog (S. pombe)##AF011905|RAD1|5810|RAD1 homolog (S. pombe)##AK002112|RAD1|5810|RAD1 homolog (S. pombe)##NM_002853|RAD1|5810|RAD1 homolog (S. pombe)	0.993973	0.0	denovo_WM_7:-20:0.233	denovo_WM_7:-21:0.233	denovo_WM_7:-22:0.233	denovo_WM_7:-23:0.233
chr6	157919982	157920148	reg1002206.p1	9.677	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-117526	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-174848	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-175481	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	324224	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	324309	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	482822	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.995783	0.0	denovo_WM_7:29:0.906
chr20	62634870	62634994	reg1002401.p2	9.674	+	TSC_hg19_v1_chr20_+_62612576 AB527848	-22346	+	AF221842 TSC_hg19_v1_chr20_+_62612506 AF026031 AK314310 AB019219 BC001666	-22401	+	TSC_hg19_v1_chr20_+_62612487 AK225993 AK001554	-22455	+	AJ243896 AF270652 BC111390 NM_018419 BC035513 BC038590 BC073971 TSC_hg19_v1_chr20_-_62680993 AB033888	46006	-	NM_198723	53506	+	NM_003195	59077	+	AF221842|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AF026031|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK314310|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AB019219|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##BC001666|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK225993|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK001554|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AJ243896|SOX18|54345|SRY (sex determining region Y)-box 18##AF270652|SOX18|54345|SRY (sex determining region Y)-box 18##BC111390|SOX18|54345|SRY (sex determining region Y)-box 18##NM_018419|SOX18|54345|SRY (sex determining region Y)-box 18##BC035513|SOX18|54345|SRY (sex determining region Y)-box 18##BC038590|SOX18|54345|SRY (sex determining region Y)-box 18##BC073971|SOX18|54345|SRY (sex determining region Y)-box 18##AB033888|SOX18|54345|SRY (sex determining region Y)-box 18##NM_198723|TCEA2|6919|transcription elongation factor A (SII), 2##NM_003195|TCEA2|6919|transcription elongation factor A (SII), 2	0.987344	0.0	denovo_WM_7:23:0.509	denovo_WM_7:24:0.241	denovo_WM_7:25:0.224
chr11	82828478	82828593	reg1002150.p1	9.673	+	BC031316 TSC_hg19_v1_chr11_+_82783118	-45417	+	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	-45638	-	AK312323 TSC_hg19_v1_chr11_-_82782872	-45662	-	NM_015885 TSC_hg19_v1_chr11_+_82868196 AK302606 AF046935 AK025103 AB020631 BC146778 BC110432 BC065384	39870	+	AK311356 TSC_hg19_v1_chr11_-_82904700	76167	-	TSC_hg19_v1_chr11_+_82904780 DQ508934 BC045621 AK310765 EF041819	76299	+	BC031316|LOC100506233|100506233|uncharacterized LOC100506233##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##AK312323|RAB30|27314|RAB30, member RAS oncogene family##NM_015885|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK302606|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AF046935|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK025103|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AB020631|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC146778|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC110432|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC065384|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK311356|DKFZp547G183|55525|uncharacterized LOC55525##DQ508934|ANKRD42|338699|ankyrin repeat domain 42##BC045621|ANKRD42|338699|ankyrin repeat domain 42##AK310765|ANKRD42|338699|ankyrin repeat domain 42##EF041819|ANKRD42|338699|ankyrin repeat domain 42	0.992182	0.0	
chr4	129207669	129207826	reg1002317.p1	9.673	+	AL832170 NM_018078 NM_032239 NM_178043 TSC_hg19_v1_chr4_+_128982502	-225245	+	TSC_hg19_v1_chr4_+_128982483 BC002840 BC018794 BC110300	-225261	+	TSC_hg19_v1_chr4_+_128982466 AK310421 AK092764 AX747714	-225305	+	TSC_hg19_v1_chr4_-_129208960 DQ893193 DQ893194 DQ893694 DQ896520 DQ896521 DQ896522 DQ896866 AJ002030 AX775755	1197	-	AK091741 AX747155 TSC_hg19_v1_chr4_-_129208964 BC016692	1217	-	TSC_hg19_v1_chr4_-_129208969 BC092478	1244	-	AL832170|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_018078|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_032239|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_178043|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC002840|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC018794|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC110300|LARP1B|55132|La ribonucleoprotein domain family, member 1B##AK310421|LARP1B|55132|La ribonucleoprotein domain family, member 1B##AK092764|LARP1B|55132|La ribonucleoprotein domain family, member 1B##DQ893193|PGRMC2|10424|progesterone receptor membrane component 2##DQ893194|PGRMC2|10424|progesterone receptor membrane component 2##DQ893694|PGRMC2|10424|progesterone receptor membrane component 2##DQ896520|PGRMC2|10424|progesterone receptor membrane component 2##DQ896521|PGRMC2|10424|progesterone receptor membrane component 2##DQ896522|PGRMC2|10424|progesterone receptor membrane component 2##DQ896866|PGRMC2|10424|progesterone receptor membrane component 2##AJ002030|PGRMC2|10424|progesterone receptor membrane component 2##AK091741|PGRMC2|10424|progesterone receptor membrane component 2##BC016692|PGRMC2|10424|progesterone receptor membrane component 2##BC092478|PGRMC2|10424|progesterone receptor membrane component 2	0.97482	0.0	denovo_WM_7:0:0.399	denovo_WM_7:1:0.213	denovo_WM_7:2:0.216
chr12	125053247	125053395	reg1002405.p2	9.672	+	AB209089 NM_001077261 NM_001206654 NM_006312 TSC_hg19_v1_chr12_-_125052138	-1246	-	TSC_hg19_v1_chr12_-_125002875 BC033087	-50462	-	AK126577 NM_181709	-279612	+	DQ892837 DQ896083 BC093732 BC112037 BC143319 Z22555 TSC_hg19_v1_chr12_-_125348344	294984	-	TSC_hg19_v1_chr12_-_125348408 AB209436 BC022087 BC080647 AK304730	295056	-	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	295152	-	AB209089|NCOR2|9612|nuclear receptor corepressor 2##NM_001077261|NCOR2|9612|nuclear receptor corepressor 2##NM_001206654|NCOR2|9612|nuclear receptor corepressor 2##NM_006312|NCOR2|9612|nuclear receptor corepressor 2##AK126577|FAM101A|144347|family with sequence similarity 101, member A##NM_181709|FAM101A|144347|family with sequence similarity 101, member A##DQ892837|SCARB1|949|scavenger receptor class B, member 1##DQ896083|SCARB1|949|scavenger receptor class B, member 1##BC093732|SCARB1|949|scavenger receptor class B, member 1##BC112037|SCARB1|949|scavenger receptor class B, member 1##BC143319|SCARB1|949|scavenger receptor class B, member 1##Z22555|SCARB1|949|scavenger receptor class B, member 1##AB209436|SCARB1|949|scavenger receptor class B, member 1##BC022087|SCARB1|949|scavenger receptor class B, member 1##BC080647|SCARB1|949|scavenger receptor class B, member 1##AK304730|SCARB1|949|scavenger receptor class B, member 1##NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1	0.998489	0.987159	denovo_WM_7:-5:0.477	denovo_WM_7:-6:0.477	CTCF.p2:-94:0.987
chr15	40388283	40388424	reg1002403.p1	9.670	+	TSC_hg19_v1_chr15_+_40331506 AK127696	-56875	+	AB451391 CU690086 TSC_hg19_v1_chr15_-_40331370 X73459 BC071716 U07857 BC100031 BC035495 BC051006 AB061546 NM_003134	-57001	-	TSC_hg19_v1_chr15_+_40294764 AK074361	-93557	+	AB590060 AY029254 AY222040 AY222041 CU686755 CU686862 NM_001003942 NM_001003943	9933	-	BC104983 BC104985 BC069328 BC069505 NM_033503 AK024472	10257	-	TSC_hg19_v1_chr15_-_40401076 BC060783 BC070043 NM_001003940	12742	-	AK127696|LOC100131089|100131089|uncharacterized LOC100131089##AB451391|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##X73459|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC071716|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##U07857|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC100031|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC035495|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC051006|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##AB061546|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##NM_003134|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##AK074361|EIF2AK4|440275|eukaryotic translation initiation factor 2 alpha kinase 4##AY029254|BMF|90427|Bcl2 modifying factor##AY222040|BMF|90427|Bcl2 modifying factor##AY222041|BMF|90427|Bcl2 modifying factor##NM_001003942|BMF|90427|Bcl2 modifying factor##NM_001003943|BMF|90427|Bcl2 modifying factor##BC104983|BMF|90427|Bcl2 modifying factor##BC104985|BMF|90427|Bcl2 modifying factor##BC069328|BMF|90427|Bcl2 modifying factor##BC069505|BMF|90427|Bcl2 modifying factor##NM_033503|BMF|90427|Bcl2 modifying factor##AK024472|BMF|90427|Bcl2 modifying factor##BC060783|BMF|90427|Bcl2 modifying factor##BC070043|BMF|90427|Bcl2 modifying factor##NM_001003940|BMF|90427|Bcl2 modifying factor	1.246123	0.0	denovo_WM_7:7:0.260	denovo_WM_7:22:0.256
chr2	70348406	70348586	reg1000808.p2	9.670	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-33498	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-33579	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-33669	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	69625	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	127223	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	136754	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.98982	0.0	denovo_WM_7:-87:0.967
chr7	99994535	99994715	reg1001299.p2	9.670	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	-23420	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	-23529	+	AJ400845 NM_178238 AF161081	-38994	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	31677	-	NM_001194990 NM_001194991 NM_001194992 TSC_hg19_v1_chr7_+_100026412	31787	+	TSC_hg19_v1_chr7_+_100026415 AK055964	31803	+	AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_001194990|MEPCE|56257|methylphosphate capping enzyme##NM_001194991|MEPCE|56257|methylphosphate capping enzyme##NM_001194992|MEPCE|56257|methylphosphate capping enzyme##AK055964|MEPCE|56257|methylphosphate capping enzyme	0.993232	0.0	denovo_WM_7:-12:0.681
chr18	52942436	52942579	reg1002297.p1	9.669	+	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-315820	-	AK058097 NM_001143829	-317229	-	TSC_hg19_v1_chr18_+_52495674 AF329499 NM_004163 BC027474 U57093	-446769	+	FR748222 NM_001243236	27275	-	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	46495	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	126331	-	AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##AK058097|CCDC68|80323|coiled-coil domain containing 68##NM_001143829|CCDC68|80323|coiled-coil domain containing 68##AF329499|RAB27B|5874|RAB27B, member RAS oncogene family##NM_004163|RAB27B|5874|RAB27B, member RAS oncogene family##BC027474|RAB27B|5874|RAB27B, member RAS oncogene family##U57093|RAB27B|5874|RAB27B, member RAS oncogene family##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4	0.986525	0.448632	CTCF.p2:-29:0.449
chr6	160399640	160399763	reg1001740.p1	9.669	+	TSC_hg19_v1_chr6_+_160390137 NM_000876 Y00285 J03528	-9568	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	-71722	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	-178358	+	NM_003057 NM_153187 X98332 BC126364 AK289887 U77086 AB527951 HQ258293	143213	+	CU689064 BC039899 AK290787 X98333 AB075951 BC030978 NM_003058	280174	-	BC144280 TSC_hg19_v1_chr6_+_160769404 AK314590 AJ001417 NM_021977	369693	+	NM_000876|IGF2R|3482|insulin-like growth factor 2 receptor##Y00285|IGF2R|3482|insulin-like growth factor 2 receptor##J03528|IGF2R|3482|insulin-like growth factor 2 receptor##BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene##AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_003057|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##NM_153187|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##X98332|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC126364|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##AK289887|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##U77086|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##HQ258293|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC039899|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AK290787|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##X98333|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AB075951|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC030978|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##NM_003058|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC144280|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AK314590|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AJ001417|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##NM_021977|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3	0.145864	0.0	
chr16	3926318	3926460	reg1002412.p1	9.668	+	TSC_hg19_v1_chr16_-_3843474 AK304771	-82863	-	TSC_hg19_v1_chr16_-_3767521 U12595 BC001455 AF043254 AB528744 CU676340 DQ893476 DQ896346 BC000406 BC002994 AF154108 AK299127 BC018950 AK223049 AK223076 AK223205 BC023585 AK093344 NM_016292	-158854	-	NM_005223	-223450	+	AB210043 NM_001079846 NM_004380	3731	-	TSC_hg19_v1_chr16_-_3930711 U47741	4309	-	TSC_hg19_v1_chr16_-_3930715 U85962	4328	-	AK304771|CREBBP|1387|CREB binding protein##U12595|TRAP1|10131|TNF receptor-associated protein 1##BC001455|TRAP1|10131|TNF receptor-associated protein 1##AF043254|TRAP1|10131|TNF receptor-associated protein 1##DQ893476|TRAP1|10131|TNF receptor-associated protein 1##DQ896346|TRAP1|10131|TNF receptor-associated protein 1##BC000406|TRAP1|10131|TNF receptor-associated protein 1##BC002994|TRAP1|10131|TNF receptor-associated protein 1##AF154108|TRAP1|10131|TNF receptor-associated protein 1##AK299127|TRAP1|10131|TNF receptor-associated protein 1##BC018950|TRAP1|10131|TNF receptor-associated protein 1##AK223049|TRAP1|10131|TNF receptor-associated protein 1##AK223076|TRAP1|10131|TNF receptor-associated protein 1##AK223205|TRAP1|10131|TNF receptor-associated protein 1##BC023585|TRAP1|10131|TNF receptor-associated protein 1##AK093344|TRAP1|10131|TNF receptor-associated protein 1##NM_016292|TRAP1|10131|TNF receptor-associated protein 1##NM_005223|DNASE1|1773|deoxyribonuclease I##AB210043|CREBBP|1387|CREB binding protein##NM_001079846|CREBBP|1387|CREB binding protein##NM_004380|CREBBP|1387|CREB binding protein##U47741|CREBBP|1387|CREB binding protein##U85962|CREBBP|1387|CREB binding protein	2.624308	0.0	denovo_WM_7:19:0.987	denovo_WM_7:34:0.988	denovo_WM_7:55:0.315
chr13	75946752	75946873	reg1002036.p1	9.667	+	CR749622 TSC_hg19_v1_chr13_-_75901948	-44890	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1238416	-	AF161471 AF113122 NM_007249	-1238823	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	109526	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	165166	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	177112	+	CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	0.062949	0.014565	
chr8	42396616	42396761	reg1002352.p2	9.667	+	TSC_hg19_v1_chr8_-_42396648 AK314774	-37	-	NM_001135676	-391	+	TSC_hg19_v1_chr8_+_42249394 AK307224 AK058201 AK308760 BC056870 BC002456	-147277	+	TSC_hg19_v1_chr8_+_42396791 NM_138436 BC013035 NM_001135674 NM_001135675	139	+	TSC_hg19_v1_chr8_-_42397069 BC028600 NM_006749	373	-	BC069681 BC069703 BC069788 NM_000749 Y08417 U62438 CU686976 CU686982	155937	+	AK314774|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_001135676|C8orf40|114926|chromosome 8 open reading frame 40##AK307224|VDAC3|7419|voltage-dependent anion channel 3##AK058201|VDAC3|7419|voltage-dependent anion channel 3##AK308760|VDAC3|7419|voltage-dependent anion channel 3##BC056870|VDAC3|7419|voltage-dependent anion channel 3##NM_138436|C8orf40|114926|chromosome 8 open reading frame 40##BC013035|C8orf40|114926|chromosome 8 open reading frame 40##NM_001135674|C8orf40|114926|chromosome 8 open reading frame 40##NM_001135675|C8orf40|114926|chromosome 8 open reading frame 40##BC028600|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_006749|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##BC069681|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069703|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069788|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##NM_000749|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##Y08417|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##U62438|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3	0.998722	0.0	denovo_WM_7:-18:0.435	denovo_WM_7:-19:0.435
chr8	26475749	26475904	reg1002310.p2	9.665	+	NM_001244604 TSC_hg19_v1_chr8_+_26435921 AK299077	-39899	+	TSC_hg19_v1_chr8_+_26435604 U17279 AB370194 AB590733 BT006944 CU691152	-40146	+	TSC_hg19_v1_chr8_+_26435468 AK223557 BC056408 D78013 BC010880 AK291287	-40299	+	U02569 AY491775 AY491776 AY491777 AY491778 AY491779 AY491780 AY491781 D25235 D32201 D32202 NM_000680 NM_033302 NM_033303 NM_033304	247092	-	AK311558 TSC_hg19_v1_chr8_-_26724735	248908	-	TSC_hg19_v1_chr8_-_26724764 AK289548	248932	-	NM_001244604|DPYSL2|1808|dihydropyrimidinase-like 2##AK299077|DPYSL2|1808|dihydropyrimidinase-like 2##U17279|DPYSL2|1808|dihydropyrimidinase-like 2##AB370194|DPYSL2|1808|dihydropyrimidinase-like 2##AK223557|DPYSL2|1808|dihydropyrimidinase-like 2##BC056408|DPYSL2|1808|dihydropyrimidinase-like 2##D78013|DPYSL2|1808|dihydropyrimidinase-like 2##AK291287|DPYSL2|1808|dihydropyrimidinase-like 2##U02569|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491775|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491776|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491777|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491778|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491780|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491781|ADRA1A|148|adrenergic, alpha-1A-, receptor##D25235|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32201|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32202|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_000680|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033302|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033303|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033304|ADRA1A|148|adrenergic, alpha-1A-, receptor##AK289548|ADRA1A|148|adrenergic, alpha-1A-, receptor	0.988888	0.0	denovo_WM_7:13:0.943
chr15	41046227	41046354	reg1002129.p1	9.664	+	TSC_hg19_v1_chr15_+_40987387 D14134 D13804	-58874	+	EU362635 NM_001164270 NM_002875 NM_133487 TSC_hg19_v1_chr15_+_40987377 BC001459 AK291969 AK303089 AK313503 AK131299 NM_001164269	-58939	+	TSC_hg19_v1_chr15_-_40987295 AK125393	-58995	-	BC063844 TSC_hg19_v1_chr15_-_41047430 AK097286 AK092058	1143	-	TSC_hg19_v1_chr15_-_41047453 AK001441 NM_018145 AK123192	1174	-	TSC_hg19_v1_chr15_+_41056274 AK223430 AK311872 NM_005258 BC112262 BC112264 BC143904 HQ258032	10018	+	D14134|RAD51|5888|RAD51 homolog (S. cerevisiae)##D13804|RAD51|5888|RAD51 homolog (S. cerevisiae)##EU362635|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164270|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_002875|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_133487|RAD51|5888|RAD51 homolog (S. cerevisiae)##BC001459|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK291969|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK303089|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK313503|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK131299|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164269|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK125393|LOC100505648|100505648|uncharacterized LOC100505648##BC063844|FAM82A2|55177|family with sequence similarity 82, member A2##AK097286|FAM82A2|55177|family with sequence similarity 82, member A2##AK092058|FAM82A2|55177|family with sequence similarity 82, member A2##AK001441|FAM82A2|55177|family with sequence similarity 82, member A2##NM_018145|FAM82A2|55177|family with sequence similarity 82, member A2##AK123192|FAM82A2|55177|family with sequence similarity 82, member A2##AK223430|GCHFR|2644|GTP cyclohydrolase I feedback regulator##AK311872|GCHFR|2644|GTP cyclohydrolase I feedback regulator##NM_005258|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112262|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112264|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC143904|GCHFR|2644|GTP cyclohydrolase I feedback regulator##HQ258032|GCHFR|2644|GTP cyclohydrolase I feedback regulator	0.999537	0.0	
chr22	40306292	40306420	reg1002149.p1	9.662	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	-9109	+	AY069959 NM_004810 TSC_hg19_v1_chr22_+_40297087 AK303332 AK303512 AF236119 AJ011736 BC025692 AF042380 AF102694	-9232	+	BC033895 NM_152512	-16563	-	AK303280 AK303657 AK312830 TSC_hg19_v1_chr22_+_40322634 AK303470	16268	+	TSC_hg19_v1_chr22_+_40390935 BC031099 NM_138435	84588	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	134553	+	AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2##AY069959|GRAP2|9402|GRB2-related adaptor protein 2##NM_004810|GRAP2|9402|GRB2-related adaptor protein 2##AK303332|GRAP2|9402|GRB2-related adaptor protein 2##AK303512|GRAP2|9402|GRB2-related adaptor protein 2##AF236119|GRAP2|9402|GRB2-related adaptor protein 2##AJ011736|GRAP2|9402|GRB2-related adaptor protein 2##BC025692|GRAP2|9402|GRB2-related adaptor protein 2##AF042380|GRAP2|9402|GRB2-related adaptor protein 2##AF102694|GRAP2|9402|GRB2-related adaptor protein 2##BC033895|ENTHD1|150350|ENTH domain containing 1##NM_152512|ENTHD1|150350|ENTH domain containing 1##AK303280|GRAP2|9402|GRB2-related adaptor protein 2##AK303657|GRAP2|9402|GRB2-related adaptor protein 2##AK312830|GRAP2|9402|GRB2-related adaptor protein 2##AK303470|GRAP2|9402|GRB2-related adaptor protein 2##BC031099|FAM83F|113828|family with sequence similarity 83, member F##NM_138435|FAM83F|113828|family with sequence similarity 83, member F##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B	1.90376	0.0	denovo_WM_7:49:0.894	denovo_WM_7:65:0.543
chr20	2880033	2880183	reg1002971.p1	9.660	+	TSC_hg19_v1_chr20_+_2854126 NM_080840 AK294990 AK297293 BX571753 AB209702 AK290233 AK294499 BC027308 X54890	-25863	+	BC126431 M34668 NM_002836 BC064406	-35325	+	BC014247 AK026029 TSC_hg19_v1_chr20_-_2821811	-58308	-	NM_080841 X53364 TSC_hg19_v1_chr20_+_2903902	23773	+	TSC_hg19_v1_chr20_+_2944935 CU693258 DQ891155 DQ894334	64818	+	AF036330 NM_001501 NM_178331 NM_178332 BC069362 BC115399 BC115400	144159	+	NM_080840|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK294990|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK297293|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BX571753|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AB209702|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK290233|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK294499|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC027308|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##X54890|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC126431|VPS16|64601|vacuolar protein sorting 16 homolog (S. cerevisiae)##M34668|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##NM_002836|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC064406|VPS16|64601|vacuolar protein sorting 16 homolog (S. cerevisiae)##BC014247|FAM113A|64773|family with sequence similarity 113, member A##AK026029|FAM113A|64773|family with sequence similarity 113, member A##NM_080841|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##X53364|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##DQ891155|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##DQ894334|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AF036330|GNRH2|2797|gonadotropin-releasing hormone 2##NM_001501|GNRH2|2797|gonadotropin-releasing hormone 2##NM_178331|GNRH2|2797|gonadotropin-releasing hormone 2##NM_178332|GNRH2|2797|gonadotropin-releasing hormone 2##BC069362|GNRH2|2797|gonadotropin-releasing hormone 2##BC115399|GNRH2|2797|gonadotropin-releasing hormone 2##BC115400|GNRH2|2797|gonadotropin-releasing hormone 2	0.485455	0.0	denovo_WM_7:-6:0.436
chr1	161268019	161268145	reg1002735.p1	9.659	+	BC028905 NM_001102566 TSC_hg19_v1_chr1_+_161228534 BC067884 BC147003 BC147004	-39517	+	AK310773 AY572806 AY572807 AY572808 AY572809 AY572810 AY572811 AY572812 AY572813 AY572814 AY572815 AY572816 AY572817 AY572818 AY572819 AY572820 AY572821 AY572822 AY572823 AY572824 AY572825 AY572826 AY572827 BC121120 BC121121 BC030972 BC069626 BC069651 AK316208 AK303757 NM_001077469 NM_001077470 NM_001077471 NM_001077472 NM_001077473 NM_001077474 NM_001077475 NM_001077476 NM_001077477 NM_001077478 NM_001077479 NM_001077480 NM_001077481 NM_001077482 NM_005122 AK303796	-60126	-	NM_032174 TSC_hg19_v1_chr1_+_161195849 AK022832 AK027704 AK297848 BX537951 AK297831	-72225	+	BT006765 DQ895885 EU176378 S66705 D10537 BC006491 AK313555 TSC_hg19_v1_chr1_-_161279760 NM_000530	11660	-	NM_001035511 NM_001035512 NM_001035513 NM_003001 TSC_hg19_v1_chr1_+_161284170 AK131051 AK293687 AK294305 BC020808 BC066329 U57877 AB211234 AB211235 AB201252 AB212048 BC012735 BC033626 D49737	16097	+	NM_001013625	69581	-	BC028905|PCP4L1|654790|Purkinje cell protein 4 like 1##NM_001102566|PCP4L1|654790|Purkinje cell protein 4 like 1##BC067884|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147003|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147004|PCP4L1|654790|Purkinje cell protein 4 like 1##AK310773|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572806|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572807|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572808|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572809|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572810|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572811|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572812|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572813|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572814|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572815|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572816|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572817|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572818|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572819|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572820|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572821|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572822|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572823|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572824|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572825|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572826|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572827|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121120|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121121|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC030972|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069626|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069651|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK316208|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303757|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077469|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077470|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077471|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077472|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077473|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077474|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077475|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077476|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077477|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077478|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077479|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077480|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077481|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077482|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_005122|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303796|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_032174|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK022832|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK027704|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297848|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BX537951|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297831|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BT006765|MPZ|4359|myelin protein zero##DQ895885|MPZ|4359|myelin protein zero##EU176378|MPZ|4359|myelin protein zero##S66705|MPZ|4359|myelin protein zero##D10537|MPZ|4359|myelin protein zero##BC006491|MPZ|4359|myelin protein zero##AK313555|MPZ|4359|myelin protein zero##NM_000530|MPZ|4359|myelin protein zero##NM_001035511|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001035512|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001035513|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_003001|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK131051|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK293687|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK294305|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC020808|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC066329|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##U57877|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB211234|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB211235|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB201252|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB212048|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC012735|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC033626|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##D49737|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001013625|C1orf192|257177|chromosome 1 open reading frame 192	0.984136	0.0	denovo_WM_7:-34:0.436
chr21	33704774	33704954	reg1002216.p1	9.655	+	AF454915 AF454916 NM_178817 NM_206898	-40741	+	CU692128 TSC_hg19_v1_chr21_-_33651338 AF387845 AF231921 AK075281 BC042917 NM_018944 AK312073	-53469	-	TSC_hg19_v1_chr21_+_33245863 AJ271722 NM_014586	-459144	+	AF231919 TSC_hg19_v1_chr21_-_33765328 NM_014825	60392	-	TSC_hg19_v1_chr21_+_33765423 BC007928 AK026376	60573	+	AY358787 NM_058187	79887	+	AF454915|MRAP|56246|melanocortin 2 receptor accessory protein##AF454916|MRAP|56246|melanocortin 2 receptor accessory protein##NM_178817|MRAP|56246|melanocortin 2 receptor accessory protein##NM_206898|MRAP|56246|melanocortin 2 receptor accessory protein##AF387845|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AF231921|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AK075281|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##BC042917|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##NM_018944|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AK312073|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AJ271722|HUNK|30811|hormonally up-regulated Neu-associated kinase##NM_014586|HUNK|30811|hormonally up-regulated Neu-associated kinase##AF231919|URB1|9875|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)##NM_014825|URB1|9875|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)##BC007928|C21orf119|84996|chromosome 21 open reading frame 119##AK026376|C21orf119|84996|chromosome 21 open reading frame 119##AY358787|C21orf63|59271|chromosome 21 open reading frame 63##NM_058187|C21orf63|59271|chromosome 21 open reading frame 63	4.868754	0.0	denovo_WM_7:6:0.441	denovo_WM_7:22:0.975	denovo_WM_7:-23:0.494	denovo_WM_7:-24:0.493	denovo_WM_7:-40:0.440	denovo_WM_7:54:0.664	denovo_WM_7:-69:0.814
chr13	36392850	36392982	reg1002192.p1	9.654	+	AK294737 NM_001204197 TSC_hg19_v1_chr13_+_36050945 AK315939	-341991	+	BC028170 AB593021 TSC_hg19_v1_chr13_-_36050827 AB593022 AK313185 AB073388 NM_005584	-342120	-	TSC_hg19_v1_chr13_+_35516429 NM_015678 AF467288	-876458	+	AK299059 AK311183 AK295777 TSC_hg19_v1_chr13_-_36429805 CR627093 AK308925 AK311434 AK311438 AK311195 NM_001195415 NM_001195416 NM_001195430	36981	-	TSC_hg19_v1_chr13_-_36705434 AB002367 BC152456	312521	-	AK295102 TSC_hg19_v1_chr13_-_36705468	312557	-	AK294737|NBEA|26960|neurobeachin##NM_001204197|NBEA|26960|neurobeachin##AK315939|NBEA|26960|neurobeachin##BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_015678|NBEA|26960|neurobeachin##AF467288|NBEA|26960|neurobeachin##AK299059|DCLK1|9201|doublecortin-like kinase 1##AK311183|DCLK1|9201|doublecortin-like kinase 1##AK295777|DCLK1|9201|doublecortin-like kinase 1##CR627093|DCLK1|9201|doublecortin-like kinase 1##AK308925|DCLK1|9201|doublecortin-like kinase 1##AK311434|DCLK1|9201|doublecortin-like kinase 1##AK311438|DCLK1|9201|doublecortin-like kinase 1##AK311195|DCLK1|9201|doublecortin-like kinase 1##NM_001195415|DCLK1|9201|doublecortin-like kinase 1##NM_001195416|DCLK1|9201|doublecortin-like kinase 1##NM_001195430|DCLK1|9201|doublecortin-like kinase 1##AB002367|DCLK1|9201|doublecortin-like kinase 1##BC152456|DCLK1|9201|doublecortin-like kinase 1##AK295102|DCLK1|9201|doublecortin-like kinase 1	0.987555	0.847374	denovo_WM_7:17:0.892	CTCF.p2:-21:0.847
chr15	70053253	70053385	reg1002321.p1	9.654	+	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	-308098	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-345957	-	TSC_hg19_v1_chr15_+_69706687 AK310402 EU176620	-346573	+	BC015421 TSC_hg19_v1_chr15_-_70341948	288590	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	336908	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	336924	-	NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##AK056793|LOC145694|145694|uncharacterized LOC145694##AK310402|KIF23|9493|kinesin family member 23##EU176620|KIF23|9493|kinesin family member 23##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	0.999364	0.0	denovo_WM_7:-31:0.841
chr19	15444596	15444776	reg1001900.p1	9.652	+	TSC_hg19_v1_chr19_-_15443351 BC067129 BC091649 BC035266 BC047888	-1356	-	TSC_hg19_v1_chr19_-_15443306 BC038988	-1381	-	BC000156 TSC_hg19_v1_chr19_-_15443139	-1548	-	TSC_hg19_v1_chr19_-_15490599 AK308251 AK303640 BC037270 Y11997 NM_005858	45920	-	DQ891853 DQ895043 TSC_hg19_v1_chr19_-_15529792 AB015332 AB025905 AJ243467 BC000713 AK001594 AK094736 AK225046 AK225291 AK310990	85089	-	TSC_hg19_v1_chr19_-_15529834 NM_014371 AK295956	85148	-	BC067129|BRD4|23476|bromodomain containing 4##BC091649|BRD4|23476|bromodomain containing 4##BC035266|BRD4|23476|bromodomain containing 4##BC047888|BRD4|23476|bromodomain containing 4##BC038988|BRD4|23476|bromodomain containing 4##BC000156|BRD4|23476|bromodomain containing 4##AK308251|AKAP8|10270|A kinase (PRKA) anchor protein 8##AK303640|AKAP8|10270|A kinase (PRKA) anchor protein 8##BC037270|AKAP8|10270|A kinase (PRKA) anchor protein 8##Y11997|AKAP8|10270|A kinase (PRKA) anchor protein 8##NM_005858|AKAP8|10270|A kinase (PRKA) anchor protein 8##DQ891853|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##DQ895043|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB015332|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB025905|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AJ243467|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##BC000713|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK001594|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK094736|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225046|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225291|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK310990|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##NM_014371|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK295956|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like	0.993792	0.0	denovo_WM_7:-58:0.248	denovo_WM_7:-59:0.248	denovo_WM_7:-60:0.248	denovo_WM_7:-61:0.248
chr10	31393832	31393976	reg1002457.p1	9.651	+	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	-73083	-	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	-105452	-	AF139543 BC066294 NM_183058	-475269	-	TSC_hg19_v1_chr10_+_31607451 BX647794	213532	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	214053	-	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	214229	+	BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##BX647794|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1	0.998022	0.0	denovo_WM_7:27:0.827
chr8	125656379	125656558	reg1002442.p2	9.650	+	AF116674 TSC_hg19_v1_chr8_-_125580771	-75707	-	TSC_hg19_v1_chr8_-_125579395 AK126989	-77062	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	-105084	+	TSC_hg19_v1_chr8_-_125716430 U50573	59964	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	83977	-	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	84255	-	AF116674|MTSS1|9788|metastasis suppressor 1##AK126989|MTSS1|9788|metastasis suppressor 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##U50573|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1	0.98292	0.0	denovo_WM_7:-44:0.698
chr22	43149125	43149236	reg1001969.p2	9.649	+	TSC_hg19_v1_chr22_-_43117270 AK312927	-31903	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	-32325	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	-59273	-	TSC_hg19_v1_chr22_-_43253228 CU012940 CU013228 CU674999 DQ893007 DQ896253 CR456382 BC005122	104031	-	TSC_hg19_v1_chr22_-_43253280 AF111847 AK307967 AK315720 AL159143 AK300531 AK297635	104090	-	TSC_hg19_v1_chr22_-_43253305 NM_001142293 NM_014570	104175	-	AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##CU012940|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CU013228|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ893007|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ896253|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CR456382|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##BC005122|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AF111847|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK307967|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK315720|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AL159143|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK300531|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK297635|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_001142293|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_014570|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3	1.982117	0.0	denovo_WM_7:20:0.986	denovo_WM_7:37:0.879
chr5	10553158	10553268	reg1002098.p2	9.645	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-111061	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-111210	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-199205	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	11229	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	208046	-	TSC_hg19_v1_chr5_-_10761341 BC002726	208129	-	AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein	0.99936	0.0	
chr4	71872010	71872187	reg1002017.p1	9.644	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	-12627	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	-12791	+	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	-103985	+	TSC_hg19_v1_chr4_+_72052481 AF011390 NM_001098484 NM_001134742 AK307594 AF157492	180625	+	AF069510 AB470072 AF053753 AF053754 AF310248 EF531618 TSC_hg19_v1_chr4_+_72102322	230188	+	BC030977 NM_003759 AF007216 AK308038 CU689062	332769	+	M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##AF011390|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001098484|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001134742|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK307594|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF157492|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF069510|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AB470072|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF053753|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF053754|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF310248|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##EF531618|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##BC030977|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_003759|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF007216|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK308038|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	0.99634	0.0	denovo_WM_7:98:0.900
chr6	139457342	139457522	reg1002201.p1	9.642	+	BC070068 AB033492 NM_016217 TSC_hg19_v1_chr6_+_139456250	-1176	+	TSC_hg19_v1_chr6_+_139349935 AK309402 AF116682 BC014953	-107514	+	NM_021243 AF161398 TSC_hg19_v1_chr6_+_139349850	-107595	+	TSC_hg19_v1_chr6_-_139613136 BX647633 AL834248 AL831988 AK314725 BX647477 BC115383 BC115384 AB085905 NM_153235	155728	-	NM_001168389 NM_001168388	237991	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	238329	-	BC070068|HECA|51696|headcase homolog (Drosophila)##AB033492|HECA|51696|headcase homolog (Drosophila)##NM_016217|HECA|51696|headcase homolog (Drosophila)##AF116682|C6orf115|58527|chromosome 6 open reading frame 115##BC014953|C6orf115|58527|chromosome 6 open reading frame 115##NM_021243|C6orf115|58527|chromosome 6 open reading frame 115##AF161398|C6orf115|58527|chromosome 6 open reading frame 115##BX647633|TXLNB|167838|taxilin beta##AL834248|TXLNB|167838|taxilin beta##AL831988|TXLNB|167838|taxilin beta##AK314725|TXLNB|167838|taxilin beta##BX647477|TXLNB|167838|taxilin beta##BC115383|TXLNB|167838|taxilin beta##BC115384|TXLNB|167838|taxilin beta##AB085905|TXLNB|167838|taxilin beta##NM_153235|TXLNB|167838|taxilin beta##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	1.400445	0.0	
chr6	132699929	132700107	reg1002099.p1	9.641	+	BT019794 BT019795 CR541734 CR541759 AB463538 AY550024 AY395801 M92934 X78947 BC087839 TSC_hg19_v1_chr6_-_132272513 AK125220 AK290884 AK315207 AK092280 NM_001901	-427604	-	TSC_hg19_v1_chr6_+_132129249 BC033008 AK314870	-570757	+	TSC_hg19_v1_chr6_+_132129157 NM_006208 BC059375 D12485 M57736	-570857	+	CU676314 DQ892164 DQ895358 TSC_hg19_v1_chr6_-_132722615 AY359094 BC018756 NM_015529	22598	-	U77942 TSC_hg19_v1_chr6_-_132834222 BC011975 AK294911 AK301464 NM_003569	134232	-	BC069083 NM_175057 AY183469	159409	+	BT019794|CTGF|1490|connective tissue growth factor##BT019795|CTGF|1490|connective tissue growth factor##CR541734|CTGF|1490|connective tissue growth factor##CR541759|CTGF|1490|connective tissue growth factor##AY550024|CTGF|1490|connective tissue growth factor##AY395801|CTGF|1490|connective tissue growth factor##M92934|CTGF|1490|connective tissue growth factor##X78947|CTGF|1490|connective tissue growth factor##BC087839|CTGF|1490|connective tissue growth factor##AK125220|CTGF|1490|connective tissue growth factor##AK290884|CTGF|1490|connective tissue growth factor##AK315207|CTGF|1490|connective tissue growth factor##AK092280|CTGF|1490|connective tissue growth factor##NM_001901|CTGF|1490|connective tissue growth factor##BC033008|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##AK314870|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##NM_006208|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##BC059375|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##D12485|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##M57736|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##DQ892164|MOXD1|26002|monooxygenase, DBH-like 1##DQ895358|MOXD1|26002|monooxygenase, DBH-like 1##AY359094|MOXD1|26002|monooxygenase, DBH-like 1##BC018756|MOXD1|26002|monooxygenase, DBH-like 1##NM_015529|MOXD1|26002|monooxygenase, DBH-like 1##U77942|STX7|8417|syntaxin 7##BC011975|STX7|8417|syntaxin 7##AK294911|STX7|8417|syntaxin 7##AK301464|STX7|8417|syntaxin 7##NM_003569|STX7|8417|syntaxin 7##BC069083|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##NM_175057|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##AY183469|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)	1.987297	0.0	
chr9	126037406	126037547	reg1002342.p1	9.641	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-6588	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-6656	-	TSC_hg19_v1_chr9_-_125941308 BC002693	-96156	-	NM_173689 AK123000 DQ426866 AY720432	81017	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	654835	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	736407	+	AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2	1.207721	0.0	denovo_WM_7:-23:0.217
chrX	133937897	133938055	reg1002190.p2	9.638	+	TSC_hg19_v1_chrX_-_133931236 BC019221 NM_001166599 AK124650 AK297720 NM_001166600 NM_001170757	-6773	-	AK307219 NM_001170780	-7534	+	AB541014 AB541015 AB528130 AM393279 CU676388 AK125991 TSC_hg19_v1_chrX_-_133930299 AK292517 AL832218 NM_001170756 NM_145284	-7667	-	NM_001170782 NM_001170784 BC016784 NM_001170779 NM_001170781 NM_001170783 NM_138819 BC017868 AK090611 AK295485 AK310079 BC063491 BC065225	3275	+	AK316570 AF086333 TSC_hg19_v1_chrX_-_134049288 AK307196 BC005700 AK299074 AL137163 NM_019556	111296	-	BC008642 NM_001163438	186991	+	BC019221|FAM122B|159090|family with sequence similarity 122B##NM_001166599|FAM122B|159090|family with sequence similarity 122B##AK124650|FAM122B|159090|family with sequence similarity 122B##AK297720|FAM122B|159090|family with sequence similarity 122B##NM_001166600|FAM122B|159090|family with sequence similarity 122B##NM_001170757|FAM122B|159090|family with sequence similarity 122B##AK307219|FAM122C|159091|family with sequence similarity 122C##NM_001170780|FAM122C|159091|family with sequence similarity 122C##AB541015|FAM122B|159090|family with sequence similarity 122B##AM393279|FAM122B|159090|family with sequence similarity 122B##AK125991|FAM122B|159090|family with sequence similarity 122B##AK292517|FAM122B|159090|family with sequence similarity 122B##AL832218|FAM122B|159090|family with sequence similarity 122B##NM_001170756|FAM122B|159090|family with sequence similarity 122B##NM_145284|FAM122B|159090|family with sequence similarity 122B##NM_001170782|FAM122C|159091|family with sequence similarity 122C##NM_001170784|FAM122C|159091|family with sequence similarity 122C##BC016784|FAM122C|159091|family with sequence similarity 122C##NM_001170779|FAM122C|159091|family with sequence similarity 122C##NM_001170781|FAM122C|159091|family with sequence similarity 122C##NM_001170783|FAM122C|159091|family with sequence similarity 122C##NM_138819|FAM122C|159091|family with sequence similarity 122C##BC017868|FAM122C|159091|family with sequence similarity 122C##AK090611|FAM122C|159091|family with sequence similarity 122C##AK295485|FAM122C|159091|family with sequence similarity 122C##AK310079|FAM122C|159091|family with sequence similarity 122C##BC063491|FAM122C|159091|family with sequence similarity 122C##BC065225|FAM122C|159091|family with sequence similarity 122C##AK316570|MOSPD1|56180|motile sperm domain containing 1##AF086333|MOSPD1|56180|motile sperm domain containing 1##AK307196|MOSPD1|56180|motile sperm domain containing 1##BC005700|MOSPD1|56180|motile sperm domain containing 1##AK299074|MOSPD1|56180|motile sperm domain containing 1##AL137163|MOSPD1|56180|motile sperm domain containing 1##NM_019556|MOSPD1|56180|motile sperm domain containing 1##BC008642|CXorf69|644538|chromosome X open reading frame 69##NM_001163438|CXorf69|644538|chromosome X open reading frame 69	0.994053	0.0	denovo_WM_7:-31:0.459	denovo_WM_7:-32:0.459
chr9	15357058	15357215	reg1002512.p1	9.637	+	TSC_hg19_v1_chr9_-_15307325 AK298998 BC142985 AK310482 NM_001168339 NM_001168340 NM_001168341 NM_152574	-49792	-	TSC_hg19_v1_chr9_-_15307215 BC070139 AK301185 AK298581 AK091187 AX746836	-49936	-	AK301427 NM_001168342	-106981	-	TSC_hg19_v1_chr9_+_15422741 BC036031 NM_001039697	65572	+	TSC_hg19_v1_chr9_+_15422873 BC121011 BC121012 U66413 BC108743 U71300 AK293310	65732	+	TSC_hg19_v1_chr9_+_15422877 AB527501 EU446705 BC014985	65776	+	AK298998|TTC39B|158219|tetratricopeptide repeat domain 39B##BC142985|TTC39B|158219|tetratricopeptide repeat domain 39B##AK310482|TTC39B|158219|tetratricopeptide repeat domain 39B##NM_001168339|TTC39B|158219|tetratricopeptide repeat domain 39B##NM_001168340|TTC39B|158219|tetratricopeptide repeat domain 39B##NM_001168341|TTC39B|158219|tetratricopeptide repeat domain 39B##NM_152574|TTC39B|158219|tetratricopeptide repeat domain 39B##BC070139|TTC39B|158219|tetratricopeptide repeat domain 39B##AK301185|TTC39B|158219|tetratricopeptide repeat domain 39B##AK298581|TTC39B|158219|tetratricopeptide repeat domain 39B##AK091187|TTC39B|158219|tetratricopeptide repeat domain 39B##AK301427|TTC39B|158219|tetratricopeptide repeat domain 39B##NM_001168342|TTC39B|158219|tetratricopeptide repeat domain 39B##BC036031|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##NM_001039697|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC121011|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC121012|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##U66413|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC108743|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##U71300|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##AK293310|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##EU446705|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC014985|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa	0.993713	0.0	
chr6_ssto_hap7	2919036	2919189	reg1002367.p1	9.636	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997902	0.0	denovo_WM_7:28:0.298	denovo_WM_7:29:0.298	denovo_WM_7:30:0.298
chr11	128042379	128042531	reg1002926.p1	9.634	+	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1169150	+	TSC_hg19_v1_chr11_-_126870685 AY358743 NM_001161707 NM_032531	-1171730	-	AB058770 BC071838 TSC_hg19_v1_chr11_-_126870667	-1171795	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	349508	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	349679	-	BX640634 NM_001143820	414997	-	BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##AY358743|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_001161707|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_032531|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AB058770|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##BC071838|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	0.996417	0.611536	denovo_WM_7:24:0.227	denovo_WM_7:25:0.268	denovo_WM_7:26:0.357	CTCF.p2:-68:0.612
chr12	57607114	57607254	reg1001875.p2	9.632	+	TSC_hg19_v1_chr12_+_57522452 BC045107	-84721	+	TSC_hg19_v1_chr12_+_57522265 BC052593 BC072015 NM_002332 X13916	-84902	+	TSC_hg19_v1_chr12_-_57505177 NM_001178078 NM_001178080 NM_001178081 NM_003153	-101987	-	AY358614 NM_007224 TSC_hg19_v1_chr12_+_57610601 BC036679 AK094231 AK290949 BC053581 CU690992	3480	+	NM_001166356 NM_005412 TSC_hg19_v1_chr12_+_57623504 AK055053 AK223555 AK298231 AK301339 AK303827 BC032584 BC044211 AK295941 BC008066 BC012833 BC011911 BC091501 CU680112 CU689432 AB527799 BT006866 DQ891309 DQ894430	16274	+	NM_001166358 BX647711 AK301443 TSC_hg19_v1_chr12_+_57623972 BX648847 NM_001166359 NM_001166357 BC004189 BC004215 BC008711 AK296183 AK297173 AK315916	16804	+	BC045107|LRP1|4035|low density lipoprotein receptor-related protein 1##BC052593|LRP1|4035|low density lipoprotein receptor-related protein 1##BC072015|LRP1|4035|low density lipoprotein receptor-related protein 1##NM_002332|LRP1|4035|low density lipoprotein receptor-related protein 1##X13916|LRP1|4035|low density lipoprotein receptor-related protein 1##NM_001178078|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_001178080|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_001178081|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_003153|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AY358614|NXPH4|11247|neurexophilin 4##NM_007224|NXPH4|11247|neurexophilin 4##BC036679|NXPH4|11247|neurexophilin 4##AK094231|NXPH4|11247|neurexophilin 4##AK290949|NXPH4|11247|neurexophilin 4##BC053581|NXPH4|11247|neurexophilin 4##NM_001166356|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_005412|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK055053|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK223555|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK298231|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK301339|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK303827|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC032584|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC044211|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK295941|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC008066|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC011911|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC091501|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BT006866|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##DQ891309|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##DQ894430|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166358|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BX647711|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK301443|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BX648847|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166359|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166357|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC008711|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK296183|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK297173|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK315916|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)	1.980322	0.924833	denovo_WM_7:-27:0.779	CTCF.p2:59:0.925
chr20	5627102	5627277	reg1002390.p4	9.628	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-35602	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-332153	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-519494	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	103877	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	264937	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	303934	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	1.931134	0.0	denovo_WM_7:-2:0.815	denovo_WM_7:14:0.920
chr9	117366870	117367050	reg1002552.p1	9.628	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	-16853	+	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	-16922	+	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	-99230	-	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	6809	+	NM_001199233	77408	-	AY434464 NM_001204344	187849	-	CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91##NM_001199233|LOC100505478|100505478|uncharacterized LOC100505478##AY434464|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001204344|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15	1.507197	0.0	denovo_WM_7:46:0.298	denovo_WM_7:49:0.215
chr10	15164856	15165029	reg1002462.p1	9.627	+	TSC_hg19_v1_chr10_+_15139363 AK057006 U77664 BC029494	-25579	+	AK314131 BC029034 NM_153244	-25633	-	NM_001097590 NM_006414 NM_183005 TSC_hg19_v1_chr10_+_15139195 AK223418	-25750	+	BC157831 BC171823 TSC_hg19_v1_chr10_-_15197364	32413	-	BT007024 CU675371 DQ890667 DQ893848 BC006376 AK315085 AK094904 AF043325 TSC_hg19_v1_chr10_-_15210693 NM_004808	45719	-	AL050367 BC109302 BC109303 NM_001010924 AY683003 TSC_hg19_v1_chr10_-_15413235	248207	-	AK057006|RPP38|10557|ribonuclease P/MRP 38kDa subunit##U77664|RPP38|10557|ribonuclease P/MRP 38kDa subunit##BC029494|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK314131|C10orf111|221060|chromosome 10 open reading frame 111##BC029034|C10orf111|221060|chromosome 10 open reading frame 111##NM_153244|C10orf111|221060|chromosome 10 open reading frame 111##NM_001097590|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_006414|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_183005|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK223418|RPP38|10557|ribonuclease P/MRP 38kDa subunit##BC157831|LOC100192204|100192204|peptidylprolyl isomerase A (cyclophilin A) pseudogene##BT007024|NMT2|9397|N-myristoyltransferase 2##DQ890667|NMT2|9397|N-myristoyltransferase 2##DQ893848|NMT2|9397|N-myristoyltransferase 2##BC006376|NMT2|9397|N-myristoyltransferase 2##AK315085|NMT2|9397|N-myristoyltransferase 2##AK094904|NMT2|9397|N-myristoyltransferase 2##AF043325|NMT2|9397|N-myristoyltransferase 2##NM_004808|NMT2|9397|N-myristoyltransferase 2##AL050367|FAM171A1|221061|family with sequence similarity 171, member A1##BC109302|FAM171A1|221061|family with sequence similarity 171, member A1##BC109303|FAM171A1|221061|family with sequence similarity 171, member A1##NM_001010924|FAM171A1|221061|family with sequence similarity 171, member A1##AY683003|FAM171A1|221061|family with sequence similarity 171, member A1	0.904891	0.0	denovo_WM_7:-2:0.459	denovo_WM_7:-3:0.400
chr1	202310754	202310877	reg1001773.p1	9.626	+	AF190501 NM_001017404	-127533	+	AY358119 BC038795 NM_021636 BC047905	-137923	+	NM_001017403 AB049405	-147641	+	AK000504 AF160215 BC004152 BC019284 TSC_hg19_v1_chr1_-_202311065	241	-	TSC_hg19_v1_chr1_-_202311082 AF161499 NM_014176	271	-	TSC_hg19_v1_chr1_+_202317826 AK307591 NM_001167857 NM_001167858 NM_002481 AB003062 AF324888 BC144699 BC110907 BC034430 BC071166	7058	+	AF190501|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017404|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AY358119|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC038795|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_021636|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC047905|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017403|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AB049405|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AK000504|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF160215|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC004152|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC019284|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF161499|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##NM_014176|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AK307591|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167857|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167858|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_002481|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB003062|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF324888|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC144699|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC110907|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC034430|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC071166|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B	1.987862	0.0	denovo_WM_7:-85:0.264	denovo_WM_7:-86:0.685	denovo_WM_7:-101:0.826
chr2	61691764	61691944	reg1002110.p1	9.626	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-287065	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-287212	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-287271	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	6003	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	6089	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	72904	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	0.995758	0.0	
chr11	33757419	33757544	reg1002245.p1	9.625	+	NM_001127227	-12984	-	AK309894 NM_001127223 NM_001127225 NM_001127226	-13209	-	NM_001166692	-35196	-	TSC_hg19_v1_chr11_-_33757970 M27909 AK311778 X16447 X17198 NM_000611 NM_203329 NM_203330 NM_203331	467	-	AB209039 AF176702 TSC_hg19_v1_chr11_-_33796067 AF174595 CU692298 EU832324 EU832409 AL136625 BC046110 AK001943 AK128454 AK304866 BC039291 NM_012175 NM_033406	38511	-	AB463835 CU692080 DQ892333 DQ895538 BC073973 TSC_hg19_v1_chr11_-_33891132	133561	-	NM_001127227|CD59|966|CD59 molecule, complement regulatory protein##AK309894|CD59|966|CD59 molecule, complement regulatory protein##NM_001127223|CD59|966|CD59 molecule, complement regulatory protein##NM_001127225|CD59|966|CD59 molecule, complement regulatory protein##NM_001127226|CD59|966|CD59 molecule, complement regulatory protein##NM_001166692|C11orf91|100131378|chromosome 11 open reading frame 91##M27909|CD59|966|CD59 molecule, complement regulatory protein##AK311778|CD59|966|CD59 molecule, complement regulatory protein##X16447|CD59|966|CD59 molecule, complement regulatory protein##X17198|CD59|966|CD59 molecule, complement regulatory protein##NM_000611|CD59|966|CD59 molecule, complement regulatory protein##NM_203329|CD59|966|CD59 molecule, complement regulatory protein##NM_203330|CD59|966|CD59 molecule, complement regulatory protein##NM_203331|CD59|966|CD59 molecule, complement regulatory protein##AB209039|FBXO3|26273|F-box protein 3##AF176702|FBXO3|26273|F-box protein 3##AF174595|FBXO3|26273|F-box protein 3##EU832324|FBXO3|26273|F-box protein 3##EU832409|FBXO3|26273|F-box protein 3##AL136625|FBXO3|26273|F-box protein 3##BC046110|FBXO3|26273|F-box protein 3##AK001943|FBXO3|26273|F-box protein 3##AK128454|FBXO3|26273|F-box protein 3##AK304866|FBXO3|26273|F-box protein 3##BC039291|FBXO3|26273|F-box protein 3##NM_012175|FBXO3|26273|F-box protein 3##NM_033406|FBXO3|26273|F-box protein 3##DQ892333|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##DQ895538|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC073973|LMO2|4005|LIM domain only 2 (rhombotin-like 1)	0.993913	0.0	denovo_WM_7:-13:0.981
chr17	27274849	27274968	reg1002413.p2	9.625	+	TSC_hg19_v1_chr17_-_27240983 AK024290	-33895	-	AX795344 TSC_hg19_v1_chr17_-_27229986 AX795345 AX795340 AX795338 AX795342 BC015582 AX795337 AX795341 AX795339 AX795335 AX795336 AK296017 AX795346 AX795343 AY358566 NM_144683	-44903	-	TSC_hg19_v1_chr17_-_27224717 NM_004475	-50196	-	BC110882 TSC_hg19_v1_chr17_-_27278336	3422	-	TSC_hg19_v1_chr17_-_27278483 AY030283 NM_001033561 NM_020889	3588	-	AB527210 TSC_hg19_v1_chr17_-_27333044 AK125377 AK223620 AY038048 NM_001098635 NM_178860 AF502129 AF502130	58117	-	AK024290|PHF12|57649|PHD finger protein 12##BC015582|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AK296017|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AY358566|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_144683|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_004475|FLOT2|2319|flotillin 2##BC110882|PHF12|57649|PHD finger protein 12##AY030283|PHF12|57649|PHD finger protein 12##NM_001033561|PHF12|57649|PHD finger protein 12##NM_020889|PHF12|57649|PHD finger protein 12##AK125377|SEZ6|124925|seizure related 6 homolog (mouse)##AK223620|SEZ6|124925|seizure related 6 homolog (mouse)##AY038048|SEZ6|124925|seizure related 6 homolog (mouse)##NM_001098635|SEZ6|124925|seizure related 6 homolog (mouse)##NM_178860|SEZ6|124925|seizure related 6 homolog (mouse)##AF502129|SEZ6|124925|seizure related 6 homolog (mouse)##AF502130|SEZ6|124925|seizure related 6 homolog (mouse)	0.997529	0.0	denovo_WM_7:4:0.884
chr16	3238027	3238188	reg1002183.p2	9.623	+	CU675598 TSC_hg19_v1_chr16_-_3191371	-46748	-	TSC_hg19_v1_chr16_+_3185119 NM_001134655 BC007287 BC116445 AK291789 AK055337 AK289834	-52948	+	TSC_hg19_v1_chr16_+_3185058 NM_004220	-53055	+	BC069335 NM_012360 Y14442	16139	+	AK315036 BC032575 AF060866 TSC_hg19_v1_chr16_-_3285159 BC025293 BC012909 AK056010 NM_001145447 NM_003454	47021	-	Y14443 BC054005 NM_001145448 NM_198088 NM_001145446 NM_198087	47300	-	NM_001134655|ZNF213|7760|zinc finger protein 213##BC007287|ZNF213|7760|zinc finger protein 213##AK291789|ZNF213|7760|zinc finger protein 213##AK055337|ZNF213|7760|zinc finger protein 213##AK289834|ZNF213|7760|zinc finger protein 213##NM_004220|ZNF213|7760|zinc finger protein 213##BC069335|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##NM_012360|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##Y14442|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##AK315036|ZNF200|7752|zinc finger protein 200##BC032575|ZNF200|7752|zinc finger protein 200##AF060866|ZNF200|7752|zinc finger protein 200##BC025293|ZNF200|7752|zinc finger protein 200##BC012909|ZNF200|7752|zinc finger protein 200##AK056010|ZNF200|7752|zinc finger protein 200##NM_001145447|ZNF200|7752|zinc finger protein 200##NM_003454|ZNF200|7752|zinc finger protein 200##Y14443|ZNF200|7752|zinc finger protein 200##BC054005|ZNF200|7752|zinc finger protein 200##NM_001145448|ZNF200|7752|zinc finger protein 200##NM_198088|ZNF200|7752|zinc finger protein 200##NM_001145446|ZNF200|7752|zinc finger protein 200##NM_198087|ZNF200|7752|zinc finger protein 200	1.931628	0.0	denovo_WM_7:-28:0.281	denovo_WM_7:-30:0.311	denovo_WM_7:-45:0.203	denovo_WM_7:-46:0.278	denovo_WM_7:-47:0.311
chr1	230269106	230269241	reg1002923.p1	9.622	+	TSC_hg19_v1_chr1_+_230203016 AK296886 AK290048 AK304029 AB591001 X85019	-66177	+	TSC_hg19_v1_chr1_+_230202957 BC041120 NM_004481	-66231	+	TSC_hg19_v1_chr1_+_229761993 BC114559 BC114963	-507159	+	BC150638 NM_024554	244217	-	TSC_hg19_v1_chr1_+_230778205 NM_001145036 NM_007357	509023	+	TSC_hg19_v1_chr1_+_230778250 AL832190 BC014960 AK302791	509060	+	AK296886|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK290048|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK304029|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##X85019|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC041120|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##NM_004481|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC114559|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC114963|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC150638|PGBD5|79605|piggyBac transposable element derived 5##NM_024554|PGBD5|79605|piggyBac transposable element derived 5##NM_001145036|COG2|22796|component of oligomeric golgi complex 2##NM_007357|COG2|22796|component of oligomeric golgi complex 2##AL832190|COG2|22796|component of oligomeric golgi complex 2##BC014960|COG2|22796|component of oligomeric golgi complex 2##AK302791|COG2|22796|component of oligomeric golgi complex 2	0.990351	0.0	denovo_WM_7:31:0.776
chr9	130668902	130669030	reg1002362.p1	9.620	+	TSC_hg19_v1_chr9_-_130667604 AY358672 AK124217 AK310850	-1351	-	TSC_hg19_v1_chr9_-_130661892 BC036102	-7056	-	TSC_hg19_v1_chr9_-_130661883 AK023900	-7087	-	BC036705 TSC_hg19_v1_chr9_-_130679297 AK292049 AK000600 NM_175039 NM_175040	10294	-	TSC_hg19_v1_chr9_-_130689700 BC042184 NM_173492	20767	-	NM_001135219	24109	-	AY358672|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK124217|LOC100131355|100131355|uncharacterized LOC100131355##AK310850|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036102|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK023900|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036705|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK292049|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK000600|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175039|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175040|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##BC042184|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_173492|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_001135219|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1	0.986147	0.0	denovo_WM_7:83:0.807
chr2	177373921	177374063	reg1001958.p1	9.619	+	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-239753	+	AF241528 NM_024501 TSC_hg19_v1_chr2_+_177053395 AK314120 BC014477 BC028190 DQ892237 DQ895437 AB464583	-320576	+	BC005124 NM_006898	-345188	+	BC013438 TSC_hg19_v1_chr2_-_177502718	128696	-	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	703482	+	AK311688 NM_001145412 NM_001145413	754579	-	NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AF241528|HOXD1|3231|homeobox D1##NM_024501|HOXD1|3231|homeobox D1##AK314120|HOXD1|3231|homeobox D1##BC014477|HOXD1|3231|homeobox D1##BC028190|HOXD1|3231|homeobox D1##DQ892237|HOXD1|3231|homeobox D1##DQ895437|HOXD1|3231|homeobox D1##BC005124|HOXD3|3232|homeobox D3##NM_006898|HOXD3|3232|homeobox D3##BC013438|LOC375295|375295|uncharacterized LOC375295##NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	0.0	0.0	
chr2	198083397	198083502	reg1002060.p2	9.616	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-292005	-	BC137150 BC137151 AY358249 NM_213608	-408512	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-419036	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	91933	-	TSC_hg19_v1_chr2_-_198175459 BC063622	92024	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	92070	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	1.012183	0.0	
chr8	103417098	103417247	reg1002978.p1	9.614	+	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-165999	-	NM_001040630	-280038	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	-280649	-	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	7739	-	NM_024410 AK315276 BC104456 BC104457	146689	+	BC011538 NM_001032282 S81439	248920	-	AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001040630|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10	0.999607	0.0	
chrY	1397049	1397229	reg1002158.p1	9.614	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-45556	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-59425	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-115555	-	BC035407 NM_002183	8369	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	63830	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	124662	-	NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like	1.98845	0.0	
chr6	111187928	111188067	reg1002336.p2	9.611	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-51271	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-51483	-	TSC_hg19_v1_chr6_-_111136424 BC037289 NM_015076 AK292360	-51579	-	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	8025	+	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	91833	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	91961	+	BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##BC037289|CDK19|23097|cyclin-dependent kinase 19##NM_015076|CDK19|23097|cyclin-dependent kinase 19##AK292360|CDK19|23097|cyclin-dependent kinase 19##AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa	0.983824	0.0	denovo_WM_7:29:0.705
chr11	61123555	61123687	reg1003262.p1	9.610	+	TSC_hg19_v1_chr11_+_61102041 BC001341	-21529	+	NM_015533 TSC_hg19_v1_chr11_+_61100711 AK023915 AK223580 AK308553	-22920	+	TSC_hg19_v1_chr11_-_61100667 AK299650 AL831958 NM_001923	-22956	-	AK225754 AK310167 NM_001161452	670	-	BC047710 TSC_hg19_v1_chr11_-_61129315 AK297063 AK310976	5677	-	TSC_hg19_v1_chr11_-_61129355 AK075559	5735	-	BC001341|DAK|26007|dihydroxyacetone kinase 2 homolog (S. cerevisiae)##NM_015533|DAK|26007|dihydroxyacetone kinase 2 homolog (S. cerevisiae)##AK023915|DAK|26007|dihydroxyacetone kinase 2 homolog (S. cerevisiae)##AK223580|DAK|26007|dihydroxyacetone kinase 2 homolog (S. cerevisiae)##AK308553|DAK|26007|dihydroxyacetone kinase 2 homolog (S. cerevisiae)##AK299650|DDB1|1642|damage-specific DNA binding protein 1, 127kDa##AL831958|DDB1|1642|damage-specific DNA binding protein 1, 127kDa##NM_001923|DDB1|1642|damage-specific DNA binding protein 1, 127kDa##AK225754|CYBASC3|220002|cytochrome b, ascorbate dependent 3##AK310167|CYBASC3|220002|cytochrome b, ascorbate dependent 3##NM_001161452|CYBASC3|220002|cytochrome b, ascorbate dependent 3##BC047710|CYBASC3|220002|cytochrome b, ascorbate dependent 3##AK297063|CYBASC3|220002|cytochrome b, ascorbate dependent 3##AK310976|CYBASC3|220002|cytochrome b, ascorbate dependent 3##AK075559|CYBASC3|220002|cytochrome b, ascorbate dependent 3	0.991581	0.0	
chr1	150539970	150540113	reg1002505.p2	9.609	+	TSC_hg19_v1_chr1_+_150521883 AF289612 NM_019032 NM_025008	-18187	+	AK292435 TSC_hg19_v1_chr1_+_150480584 AK301369 AK316390 AK302279 U65932 DQ893011 DQ896257	-59407	+	NM_001202858 NM_004425 NM_022664 TSC_hg19_v1_chr1_+_150480582 AK097205 AK097046 BC023505 DQ010946 DQ112074 U68186 U68187	-59507	+	AB385142 AF203373 BT006640 CU677857 DQ890628 DQ893795 FJ917536 TSC_hg19_v1_chr1_-_150552076 AF118124 BC017197 BC071897 L08246 AK300499 BC107735 AK294462	11999	-	TSC_hg19_v1_chr1_-_150552077 AK316267 AK297217 AK304775 AK312508	12040	-	TSC_hg19_v1_chr1_-_150552129 NM_001197320 NM_021960 NM_182763	12129	-	AF289612|ADAMTSL4|54507|ADAMTS-like 4##NM_019032|ADAMTSL4|54507|ADAMTS-like 4##NM_025008|ADAMTSL4|54507|ADAMTS-like 4##AK292435|ECM1|1893|extracellular matrix protein 1##AK301369|ECM1|1893|extracellular matrix protein 1##AK316390|ECM1|1893|extracellular matrix protein 1##AK302279|ECM1|1893|extracellular matrix protein 1##U65932|ECM1|1893|extracellular matrix protein 1##DQ893011|ECM1|1893|extracellular matrix protein 1##DQ896257|ECM1|1893|extracellular matrix protein 1##NM_001202858|ECM1|1893|extracellular matrix protein 1##NM_004425|ECM1|1893|extracellular matrix protein 1##NM_022664|ECM1|1893|extracellular matrix protein 1##AK097205|ECM1|1893|extracellular matrix protein 1##AK097046|ECM1|1893|extracellular matrix protein 1##BC023505|ECM1|1893|extracellular matrix protein 1##U68186|ECM1|1893|extracellular matrix protein 1##U68187|ECM1|1893|extracellular matrix protein 1##AF203373|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BT006640|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ890628|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ893795|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##FJ917536|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AF118124|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC017197|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC071897|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##L08246|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK300499|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC107735|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK294462|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK316267|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK297217|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK304775|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK312508|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_001197320|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_021960|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_182763|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)	0.01236	0.0	
chrX	1447048	1447228	reg1002157.p1	9.602	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-45555	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-59424	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-115554	-	BC035407 NM_002183	8370	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	63831	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	124663	-	NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like	1.98845	0.0	
chr12	4355349	4355493	reg1002283.p1	9.601	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-372921	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-493039	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-493153	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	27623	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	74970	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	133379	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	0.650167	0.0	denovo_WM_7:-17:0.480
chr16	11853964	11854127	reg1002880.p1	9.600	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-17389	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-91747	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-173256	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	37006	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	37070	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	91359	-	AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1	1.9809	0.0	denovo_WM_7:-42:0.760	denovo_WM_7:-57:0.390	denovo_WM_7:-58:0.516
chr12	131464561	131464678	reg1002254.p2	9.597	+	BX649116 NM_198827 TSC_hg19_v1_chr12_+_131438455	-26166	+	TSC_hg19_v1_chr12_+_131356640 BC072000 BC014901 BC004272 BC016654	-107908	+	AK300934 TSC_hg19_v1_chr12_+_131356617 BC014518 AL357616 BC051908	-107994	+	TSC_hg19_v1_chr12_+_132195623 BC142980	730994	+	TSC_hg19_v1_chr12_+_132195639 BC024041 AK295149 AK310836 BC008707 BC015953 NM_004592 AB208921 U08377 BC113420 BC136678 BC144364	731037	+	TSC_hg19_v1_chr12_+_132312945 BC045610 AB021225 NM_016155 BC040507	848347	+	BX649116|GPR133|283383|G protein-coupled receptor 133##NM_198827|GPR133|283383|G protein-coupled receptor 133##BC072000|RAN|5901|RAN, member RAS oncogene family##BC014901|RAN|5901|RAN, member RAS oncogene family##BC004272|RAN|5901|RAN, member RAS oncogene family##BC016654|RAN|5901|RAN, member RAS oncogene family##AK300934|RAN|5901|RAN, member RAS oncogene family##BC014518|RAN|5901|RAN, member RAS oncogene family##AL357616|RAN|5901|RAN, member RAS oncogene family##BC051908|RAN|5901|RAN, member RAS oncogene family##BC142980|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC024041|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC008707|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC015953|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_004592|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AB208921|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##U08377|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC113420|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC136678|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC144364|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC045610|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##AB021225|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##NM_016155|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC040507|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)	0.98982	0.0	denovo_WM_7:41:0.967
chr14	64226900	64227052	reg1002570.p2	9.594	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-32227	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-118414	-	BX248008 NM_001008726	-118852	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	92719	+	NM_182913 AY061758 AK297874	453901	+	NM_182910	455695	+	AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.985329	0.0	denovo_WM_7:6:0.767
chr6	135772891	135773011	reg1002386.p2	9.589	+	TSC_hg19_v1_chr6_+_135517056 X17469	-255862	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	-256045	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-270365	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	45874	-	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	45934	-	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	46013	+	X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271	0.943345	0.023346	denovo_WM_7:32:0.490	denovo_WM_7:33:0.208
chrX	56753195	56753305	reg1002169.p1	9.589	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-163199	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-494340	+	TSC_hg19_v1_chrX_+_55744181 NM_006064 NM_016656 AL831926 AK289407 BC034726 X90530	-1009062	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	2441	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	268721	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	394678	-	NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##NM_006064|RRAGB|10325|Ras-related GTP binding B##NM_016656|RRAGB|10325|Ras-related GTP binding B##AL831926|RRAGB|10325|Ras-related GTP binding B##AK289407|RRAGB|10325|Ras-related GTP binding B##BC034726|RRAGB|10325|Ras-related GTP binding B##X90530|RRAGB|10325|Ras-related GTP binding B##BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B	0.247099	0.970825	CTCF.p2:-17:0.971	denovo_WM_7:32:0.202
chr1	221340493	221340655	reg1002148.p1	9.588	+	TSC_hg19_v1_chr1_+_221053066 AB463713 DQ893305 DQ896761	-287475	+	TSC_hg19_v1_chr1_+_221052845 AK127923 AK313298 BC033808	-287660	+	TSC_hg19_v1_chr1_+_221052739 AK056326 NM_021958 BC007294 AB208812 M60721	-287813	+	NM_144728	570227	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	574834	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	574856	-	DQ893305|HLX|3142|H2.0-like homeobox##DQ896761|HLX|3142|H2.0-like homeobox##AK127923|HLX|3142|H2.0-like homeobox##AK313298|HLX|3142|H2.0-like homeobox##BC033808|HLX|3142|H2.0-like homeobox##AK056326|HLX|3142|H2.0-like homeobox##NM_021958|HLX|3142|H2.0-like homeobox##BC007294|HLX|3142|H2.0-like homeobox##AB208812|HLX|3142|H2.0-like homeobox##M60721|HLX|3142|H2.0-like homeobox##NM_144728|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10	0.96161	0.0	denovo_WM_7:13:0.962
chr8	97246990	97247137	reg1002421.p1	9.587	+	BC127948 BC127947 AJ537424 NM_001001557	-74082	-	TSC_hg19_v1_chr8_-_96281430 BC036855 BC150301 AK055162 GQ240139 NM_177965	-965598	-	TSC_hg19_v1_chr8_+_96281043 GU295153 GU295154 GU295155 GU295156 GU295157 GU295158 GU295159 GU295160 GU295161 GU295162 GU295163	-966012	+	CR542176 CR542196 TSC_hg19_v1_chr8_-_97247774 AK307085 NM_001199975 BC041005 AK295007 AK311756 M22348 X13585 M26700 BC005230 NM_006294	746	-	BC012995 NM_015942 TSC_hg19_v1_chr8_-_97273837 AK309002	26754	-	TSC_hg19_v1_chr8_+_97274125 AK293036	27055	+	BC127948|GDF6|392255|growth differentiation factor 6##BC127947|GDF6|392255|growth differentiation factor 6##AJ537424|GDF6|392255|growth differentiation factor 6##NM_001001557|GDF6|392255|growth differentiation factor 6##BC036855|C8orf37|157657|chromosome 8 open reading frame 37##BC150301|C8orf37|157657|chromosome 8 open reading frame 37##AK055162|C8orf37|157657|chromosome 8 open reading frame 37##GQ240139|C8orf37|157657|chromosome 8 open reading frame 37##NM_177965|C8orf37|157657|chromosome 8 open reading frame 37##GU295153|LOC100616530|100616530|tospeak##GU295154|LOC100616530|100616530|tospeak##GU295155|LOC100616530|100616530|tospeak##GU295156|LOC100616530|100616530|tospeak##GU295157|LOC100616530|100616530|tospeak##GU295158|LOC100616530|100616530|tospeak##GU295159|LOC100616530|100616530|tospeak##GU295160|LOC100616530|100616530|tospeak##GU295161|LOC100616530|100616530|tospeak##GU295162|LOC100616530|100616530|tospeak##GU295163|LOC100616530|100616530|tospeak##CR542176|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##CR542196|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##AK307085|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##NM_001199975|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##BC041005|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##AK295007|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##AK311756|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##M22348|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##X13585|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##M26700|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##BC005230|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##NM_006294|UQCRB|7381|ubiquinol-cytochrome c reductase binding protein##BC012995|MTERFD1|51001|MTERF domain containing 1##NM_015942|MTERFD1|51001|MTERF domain containing 1##AK309002|MTERFD1|51001|MTERF domain containing 1##AK293036|PTDSS1|9791|phosphatidylserine synthase 1	1.977082	0.82435	denovo_WM_7:10:0.814	CTCF.p2:-12:0.824	denovo_WM_7:29:0.348	denovo_WM_7:30:0.306
chr18	60825121	60825262	reg1002463.p2	9.585	+	TSC_hg19_v1_chr18_-_60795898 AF401211	-29256	-	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-440883	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-441265	+	BC027258 NM_000633 NM_000657	161369	-	TSC_hg19_v1_chr18_-_60986977 X06487	161802	-	TSC_hg19_v1_chr18_-_60987309 M13994	162095	-	AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2##M13994|BCL2|596|B-cell CLL/lymphoma 2	1.490431	0.0	denovo_WM_7:-4:0.827	denovo_WM_7:-20:0.427
chr19	42449300	42449458	reg1002506.p2	9.585	+	NM_199002 TSC_hg19_v1_chr19_+_42388510 BC034013 BC067262	-60893	+	TSC_hg19_v1_chr19_+_42387309 U64105	-62061	+	BC064996 TSC_hg19_v1_chr19_+_42387266 NM_004706 NM_198977 BC011726	-62102	+	AF112996 BT019964 CR457214 CR542116 AB590878 AF112202 AJ133534 BC008950 TSC_hg19_v1_chr19_-_42463499	14089	-	TSC_hg19_v1_chr19_-_42463500 NM_006423	14141	-	AK295833 TSC_hg19_v1_chr19_-_42498254	48858	-	NM_199002|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC034013|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC067262|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##U64105|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC064996|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_004706|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_198977|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC011726|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##AF112996|RABAC1|10567|Rab acceptor 1 (prenylated)##BT019964|RABAC1|10567|Rab acceptor 1 (prenylated)##CR457214|RABAC1|10567|Rab acceptor 1 (prenylated)##CR542116|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112202|RABAC1|10567|Rab acceptor 1 (prenylated)##AJ133534|RABAC1|10567|Rab acceptor 1 (prenylated)##BC008950|RABAC1|10567|Rab acceptor 1 (prenylated)##NM_006423|RABAC1|10567|Rab acceptor 1 (prenylated)##AK295833|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide	0.884017	0.0	denovo_WM_7:-43:0.852
chr22	39381163	39381335	reg1002409.p2	9.585	+	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	-2818	+	NM_001193289 NM_145699 U03891 BC126416 BC144146 CR456393 AB528063 CU012950 CU013238 HQ258100	-27639	+	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	-112945	-	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	29002	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	29077	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	35878	+	AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##NM_001193289|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##NM_145699|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##U03891|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC126416|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC144146|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CR456393|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU012950|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU013238|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##HQ258100|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D	1.458046	0.0	denovo_WM_7:-2:0.659	denovo_WM_7:-18:0.418
chr16	17039258	17039390	reg1002275.p1	9.584	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-712794	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-712836	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-712842	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	525481	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1534067	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1758772	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	1.422097	0.0	
chr2	171622116	171622296	reg1002375.p1	9.582	+	TSC_hg19_v1_chr2_+_171572707 BC069026	-49496	+	TSC_hg19_v1_chr2_+_171571942 AB464708	-50229	+	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	-50348	+	M81883 NM_000817 NM_013445 BC037780 TSC_hg19_v1_chr2_+_171673241	50953	+	TSC_hg19_v1_chr2_+_171673396 AK292582 BC026349 BC002815 S61898 L16888 Z22750	51206	+	NM_001201428 AL117430 AK125761 NM_015530	162785	+	BC069026|SP5|389058|Sp5 transcription factor##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor##M81883|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##NM_000817|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##NM_013445|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC037780|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##AK292582|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC026349|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC002815|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##S61898|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##L16888|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##Z22750|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##NM_001201428|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AL117430|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK125761|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##NM_015530|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa	0.999607	0.0	
chr1	156364972	156365098	reg1002370.p1	9.579	+	AF193807 AK290840 AK294641 AK303799 AK303814 AY139092 AY139093 NM_020407 AK308556 TSC_hg19_v1_chr1_+_156339022 AK054780 BC065218	-26014	+	TSC_hg19_v1_chr1_-_156308103 NM_001008800 NM_005998	-56883	-	TSC_hg19_v1_chr1_-_156308084 AL833197 AB208882 AK308023	-56959	-	NM_006365 U49857 BC059943 BC107686 BC050448 TSC_hg19_v1_chr1_-_156399219 AK095626 BC054045	34241	-	BC040949 TSC_hg19_v1_chr1_-_156460409	95368	-	TSC_hg19_v1_chr1_-_156470522 BC054520 NM_005920 AK308641	105483	-	AF193807|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK290840|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK294641|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK303799|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK303814|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AY139092|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AY139093|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##NM_020407|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK308556|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##AK054780|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##BC065218|RHBG|57127|Rh family, B glycoprotein (gene/pseudogene)##NM_001008800|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##NM_005998|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AL833197|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AB208882|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK308023|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##NM_006365|C1orf61|10485|chromosome 1 open reading frame 61##U49857|C1orf61|10485|chromosome 1 open reading frame 61##BC059943|C1orf61|10485|chromosome 1 open reading frame 61##BC107686|C1orf61|10485|chromosome 1 open reading frame 61##BC050448|C1orf61|10485|chromosome 1 open reading frame 61##AK095626|C1orf61|10485|chromosome 1 open reading frame 61##BC054045|C1orf61|10485|chromosome 1 open reading frame 61##BC040949|MEF2D|4209|myocyte enhancer factor 2D##BC054520|MEF2D|4209|myocyte enhancer factor 2D##NM_005920|MEF2D|4209|myocyte enhancer factor 2D##AK308641|MEF2D|4209|myocyte enhancer factor 2D	0.998994	0.131471	denovo_WM_7:25:0.310	denovo_WM_7:26:0.310	denovo_WM_7:27:0.310
chr2	109191575	109191726	reg1002005.p1	9.578	+	TSC_hg19_v1_chr2_+_109150925 AK314217	-40707	+	TSC_hg19_v1_chr2_+_109150916 NM_001193483 AK296992 AF527761	-40785	+	TSC_hg19_v1_chr2_-_109150636 BC004487 AK095987	-41005	-	TSC_hg19_v1_chr2_+_109204761 NM_004987 U09284	13106	+	TSC_hg19_v1_chr2_+_109204792 AF527763	13135	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	13319	+	AK314217|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193483|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK296992|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527761|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC004487|FLJ38668|644903|uncharacterized LOC644903##AK095987|FLJ38668|644903|uncharacterized LOC644903##NM_004987|LIMS1|3987|LIM and senescent cell antigen-like domains 1##U09284|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527763|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1	0.010933	0.0	
chr3	16550270	16550412	reg1002396.p1	9.573	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-243633	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-243952	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-334147	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	4677	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	4883	-	BX648638 AK303026 NM_001190811	95929	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	0.046499	0.0	
chr11	93904989	93905125	reg1002558.p1	9.572	+	TSC_hg19_v1_chr11_+_93862307 AY359023 FM201789	-42737	+	AK074897 TSC_hg19_v1_chr11_+_93862143 AF093239	-42906	+	TSC_hg19_v1_chr11_+_93862126 BC016931 NM_015368 AF398509 AK313074	-42962	+	NM_001199206	133745	+	TSC_hg19_v1_chr11_-_94134589 AK315161 NM_016540	229525	-	U37359 TSC_hg19_v1_chr11_-_94227011 BC017823 BC005241 AK095388 AF022778 AK308318 NM_005590 NM_005591	321916	-	AY359023|PANX1|24145|pannexin 1##FM201789|PANX1|24145|pannexin 1##AK074897|PANX1|24145|pannexin 1##AF093239|PANX1|24145|pannexin 1##BC016931|PANX1|24145|pannexin 1##NM_015368|PANX1|24145|pannexin 1##AF398509|PANX1|24145|pannexin 1##AK313074|PANX1|24145|pannexin 1##NM_001199206|FOLR4|390243|folate receptor 4 (delta) homolog (mouse)##AK315161|GPR83|10888|G protein-coupled receptor 83##NM_016540|GPR83|10888|G protein-coupled receptor 83##U37359|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##BC017823|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##BC005241|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AK095388|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AF022778|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AK308318|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_005590|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_005591|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)	0.823487	0.949664	CTCF.p2:-15:0.950	denovo_WM_7:22:0.303	denovo_WM_7:23:0.520
chr17	57976571	57976684	reg1001907.p1	9.572	+	TSC_hg19_v1_chr17_+_57970492 AK300202 AK312875 BC053365 M60724 AB384946 CU690966 AK297147	-6085	+	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	-6165	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	-6436	-	TSC_hg19_v1_chr17_-_58042085 AK295162 BC088365	65451	-	BC006971 TSC_hg19_v1_chr17_-_58042099 AK294806 AK296197 NM_016125	65480	-	TSC_hg19_v1_chr17_-_58156283 AK127708 AK314655 BC119771 BC119813 BX640819 BX640831 CR627418 NM_022070 AF349752	179727	-	AK300202|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK312875|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC053365|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##M60724|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK297147|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##AK295162|RNFT1|51136|ring finger protein, transmembrane 1##BC088365|RNFT1|51136|ring finger protein, transmembrane 1##BC006971|RNFT1|51136|ring finger protein, transmembrane 1##AK294806|RNFT1|51136|ring finger protein, transmembrane 1##AK296197|RNFT1|51136|ring finger protein, transmembrane 1##NM_016125|RNFT1|51136|ring finger protein, transmembrane 1##AK127708|HEATR6|63897|HEAT repeat containing 6##AK314655|HEATR6|63897|HEAT repeat containing 6##BC119771|HEATR6|63897|HEAT repeat containing 6##BC119813|HEATR6|63897|HEAT repeat containing 6##BX640819|HEATR6|63897|HEAT repeat containing 6##BX640831|HEATR6|63897|HEAT repeat containing 6##CR627418|HEATR6|63897|HEAT repeat containing 6##NM_022070|HEATR6|63897|HEAT repeat containing 6##AF349752|HEATR6|63897|HEAT repeat containing 6	0.999048	0.0	denovo_WM_7:-52:0.655	denovo_WM_7:-53:0.254
chr2	133737421	133737601	reg1002619.p4	9.571	+	AK124659 TSC_hg19_v1_chr2_-_133539761	-197817	-	NM_001077427 AK309668	-308401	-	NM_144586	-309031	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	441843	-	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	588527	-	NM_002410 D17716 AF113921	1274374	+	AK124659|NCKAP5|344148|NCK-associated protein 5##NM_001077427|LYPD1|116372|LY6/PLAUR domain containing 1##AK309668|LYPD1|116372|LY6/PLAUR domain containing 1##NM_144586|LYPD1|116372|LY6/PLAUR domain containing 1##AK092189|NCKAP5|344148|NCK-associated protein 5##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	1.972105	0.0	denovo_WM_7:37:0.819	denovo_WM_7:66:0.778
chr16	73066524	73066639	reg1001638.p1	9.569	+	TSC_hg19_v1_chr16_-_72991733 BC029653	-74876	-	TSC_hg19_v1_chr16_+_72699031 AK021563	-367517	+	AK122925 NM_001160213	-860233	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	15640	-	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	26005	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	1264112	+	BC029653|ZFHX3|463|zinc finger homeobox 3##AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.938871	0.0	denovo_WM_7:9:0.869
chr1	78235927	78236107	reg1002586.p1	9.569	+	TSC_hg19_v1_chr1_-_78225538 BC016663 AK308402 AB029020 AF383172 AF383173 AK022864 NM_015017 NM_201624 NM_201626	-10565	-	TSC_hg19_v1_chr1_-_78149099 BC035079 BC035079	-86819	-	TSC_hg19_v1_chr1_-_78148354 BX641096 BX641096 AK310514 BX641001 BX641001 NM_015534	-87662	-	TSC_hg19_v1_chr1_+_78245342 BX537792 NM_198549 BC130387 BC144167 AK296411 AK092412 AX747532	9317	+	NM_001172309 NM_144573 AK298565 AK300728 AK307487 CR936630 BX648546 DQ464902 AF176780 AY211912 TSC_hg19_v1_chr1_+_78354351 BC055084	118295	+	DQ895919 EU176379 U05040 TSC_hg19_v1_chr1_-_78444757 BC010083 BC017247 AK300032 AK301581 AK303568	208709	-	BC016663|USP33|23032|ubiquitin specific peptidase 33##AK308402|USP33|23032|ubiquitin specific peptidase 33##AB029020|USP33|23032|ubiquitin specific peptidase 33##AF383172|USP33|23032|ubiquitin specific peptidase 33##AF383173|USP33|23032|ubiquitin specific peptidase 33##AK022864|USP33|23032|ubiquitin specific peptidase 33##NM_015017|USP33|23032|ubiquitin specific peptidase 33##NM_201624|USP33|23032|ubiquitin specific peptidase 33##NM_201626|USP33|23032|ubiquitin specific peptidase 33##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641096|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641096|ZZZ3|26009|zinc finger, ZZ-type containing 3##AK310514|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641001|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641001|ZZZ3|26009|zinc finger, ZZ-type containing 3##NM_015534|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX537792|FAM73A|374986|family with sequence similarity 73, member A##NM_198549|FAM73A|374986|family with sequence similarity 73, member A##BC130387|FAM73A|374986|family with sequence similarity 73, member A##BC144167|FAM73A|374986|family with sequence similarity 73, member A##AK296411|FAM73A|374986|family with sequence similarity 73, member A##AK092412|FAM73A|374986|family with sequence similarity 73, member A##NM_001172309|NEXN|91624|nexilin (F actin binding protein)##NM_144573|NEXN|91624|nexilin (F actin binding protein)##AK298565|NEXN|91624|nexilin (F actin binding protein)##AK300728|NEXN|91624|nexilin (F actin binding protein)##AK307487|NEXN|91624|nexilin (F actin binding protein)##CR936630|NEXN|91624|nexilin (F actin binding protein)##BX648546|NEXN|91624|nexilin (F actin binding protein)##DQ464902|NEXN|91624|nexilin (F actin binding protein)##AF176780|NEXN|91624|nexilin (F actin binding protein)##AY211912|NEXN|91624|nexilin (F actin binding protein)##BC055084|NEXN|91624|nexilin (F actin binding protein)##DQ895919|FUBP1|8880|far upstream element (FUSE) binding protein 1##EU176379|FUBP1|8880|far upstream element (FUSE) binding protein 1##U05040|FUBP1|8880|far upstream element (FUSE) binding protein 1##BC010083|FUBP1|8880|far upstream element (FUSE) binding protein 1##BC017247|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK300032|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK301581|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK303568|FUBP1|8880|far upstream element (FUSE) binding protein 1	0.988486	0.0	denovo_WM_7:-39:0.819
chr1	200876754	200876913	reg1002602.p2	9.568	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	-12836	+	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	-16187	+	BC126386 BC126388 AK315339 NM_005298	-34710	+	AM177180 AB527174 BC137281 BC144557 TSC_hg19_v1_chr1_-_200992598	115721	-	TSC_hg19_v1_chr1_-_200992826 AB007918 NM_001252100 NM_001252102 NM_001252103 NM_017596	115998	-	TSC_hg19_v1_chr1_+_200993085 AK022893 BC037533 BC016656	116254	+	AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##AM177180|KIF21B|23046|kinesin family member 21B##BC137281|KIF21B|23046|kinesin family member 21B##BC144557|KIF21B|23046|kinesin family member 21B##AB007918|KIF21B|23046|kinesin family member 21B##NM_001252100|KIF21B|23046|kinesin family member 21B##NM_001252102|KIF21B|23046|kinesin family member 21B##NM_001252103|KIF21B|23046|kinesin family member 21B##NM_017596|KIF21B|23046|kinesin family member 21B	0.997771	0.0	denovo_WM_7:-38:0.880
chr7	100822601	100822709	reg1002292.p2	9.568	+	BC063835 BC044212 TSC_hg19_v1_chr7_-_100808851 AK225839 NM_003378 BC036537	-13803	-	NM_001283 TSC_hg19_v1_chr7_+_100797756 AK312151 BC003561 AB015319	-24927	+	NM_000602 NM_001165413 TSC_hg19_v1_chr7_+_100770384 AK293248 AK297728 AK298048 AK316225 BC020765 X04729 BC010860 X04429 X12701 BC005927 M16006	-52241	+	BC037583 BC104841 AK096556 NM_198571	870	-	BC100953 BC100954 BC100955 AY358200 AY229854 NM_178176	21591	-	TSC_hg19_v1_chr7_-_100858312 BC018946	35713	-	BC063835|VGF|7425|VGF nerve growth factor inducible##BC044212|VGF|7425|VGF nerve growth factor inducible##AK225839|VGF|7425|VGF nerve growth factor inducible##NM_003378|VGF|7425|VGF nerve growth factor inducible##BC036537|VGF|7425|VGF nerve growth factor inducible##NM_001283|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AK312151|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC003561|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AB015319|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##NM_000602|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001165413|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK293248|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK297728|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK298048|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK316225|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC020765|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04729|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC010860|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04429|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X12701|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005927|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##M16006|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC037583|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##BC104841|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##AK096556|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##NM_198571|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##BC100953|MOGAT3|346606|monoacylglycerol O-acyltransferase 3##BC100954|MOGAT3|346606|monoacylglycerol O-acyltransferase 3##BC100955|MOGAT3|346606|monoacylglycerol O-acyltransferase 3##AY358200|MOGAT3|346606|monoacylglycerol O-acyltransferase 3##AY229854|MOGAT3|346606|monoacylglycerol O-acyltransferase 3##NM_178176|MOGAT3|346606|monoacylglycerol O-acyltransferase 3##BC018946|PLOD3|8985|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	0.922478	0.0	denovo_WM_7:0:0.632	denovo_WM_7:1:0.290
chr3	42057626	42057755	reg1002568.p1	9.567	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-54131	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-816666	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-816741	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	75143	+	TSC_hg19_v1_chr3_+_42190749 AK294221	133058	+	AL713787 TSC_hg19_v1_chr3_+_42190865	133157	+	BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1	0.993584	0.0	denovo_WM_7:8:0.286	denovo_WM_7:15:0.452
chr17	29648657	29648836	reg1002593.p1	9.566	+	TSC_hg19_v1_chr17_-_29648631 BC035572 AK295311 AK312348 NM_001003927 NM_014210	-48	-	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	-7635	-	TSC_hg19_v1_chr17_-_29641092 BC005926	-7657	-	AY169244 NM_032932 TSC_hg19_v1_chr17_+_29718692	69921	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	70118	+	TSC_hg19_v1_chr17_+_29815032 AK097424	166315	+	BC035572|EVI2A|2123|ecotropic viral integration site 2A##AK295311|EVI2A|2123|ecotropic viral integration site 2A##AK312348|EVI2A|2123|ecotropic viral integration site 2A##NM_001003927|EVI2A|2123|ecotropic viral integration site 2A##NM_014210|EVI2A|2123|ecotropic viral integration site 2A##AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AY169244|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##NM_032932|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)	0.996018	0.0	denovo_WM_7:-6:0.571	denovo_WM_7:-7:0.369
chr12	45241782	45241907	reg1002249.p3	9.565	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-1011938	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-1041732	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-1089065	+	D89629 AK315960 AK299277 NM_001145109	27547	-	BC020544 TSC_hg19_v1_chr12_-_45269991	28133	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	28261	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	0.997731	0.0	denovo_WM_7:-19:0.238	denovo_WM_7:-20:0.238	denovo_WM_7:-21:0.238	denovo_WM_7:-22:0.238
chr10	95187265	95187434	reg1002379.p2	9.561	+	AK075374 NM_000783 AF005418	-353693	+	AK027560 NM_057157	-354118	+	AY356349 NM_183374	-366329	+	TSC_hg19_v1_chr10_-_95242092 AB033033 AF207990 AB384582 AF182316 BC052617 BC040110 NM_013451 NM_133337	54699	-	TSC_hg19_v1_chr10_+_95256395 NM_001127182 AY788918 NM_018131 AK315536 BX640718 AK223495 AB091343 BC008947	69039	+	TSC_hg19_v1_chr10_+_95326409 NM_001195755 NM_181745 AK301525 AB115768 AY288417 BC101175 AY255573	139160	+	AK075374|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_000783|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AF005418|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AK027560|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_057157|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##AB033033|MYOF|26509|myoferlin##AF207990|MYOF|26509|myoferlin##AF182316|MYOF|26509|myoferlin##BC052617|MYOF|26509|myoferlin##BC040110|MYOF|26509|myoferlin##NM_013451|MYOF|26509|myoferlin##NM_133337|MYOF|26509|myoferlin##NM_001127182|CEP55|55165|centrosomal protein 55kDa##AY788918|CEP55|55165|centrosomal protein 55kDa##NM_018131|CEP55|55165|centrosomal protein 55kDa##AK315536|CEP55|55165|centrosomal protein 55kDa##BX640718|CEP55|55165|centrosomal protein 55kDa##AK223495|CEP55|55165|centrosomal protein 55kDa##AB091343|CEP55|55165|centrosomal protein 55kDa##BC008947|CEP55|55165|centrosomal protein 55kDa##NM_001195755|O3FAR1|338557|omega-3 fatty acid receptor 1##NM_181745|O3FAR1|338557|omega-3 fatty acid receptor 1##AK301525|O3FAR1|338557|omega-3 fatty acid receptor 1##AB115768|O3FAR1|338557|omega-3 fatty acid receptor 1##AY288417|O3FAR1|338557|omega-3 fatty acid receptor 1##BC101175|O3FAR1|338557|omega-3 fatty acid receptor 1##AY255573|O3FAR1|338557|omega-3 fatty acid receptor 1	0.999559	0.0	
chr14	73129817	73129968	reg1002189.p4	9.561	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-730026	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-730739	+	AK294895 NM_001204423	-731076	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	230916	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	263243	+	AK098542 AF311602 NM_178441	323765	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.993812	0.0	denovo_WM_7:-6:0.248	denovo_WM_7:-7:0.248	denovo_WM_7:-8:0.248	denovo_WM_7:-9:0.248
chr3	99550967	99551106	reg1003088.p1	9.561	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	-14291	+	AK311449 NM_001850 NM_020351 AF170702 BC013581	-193586	+	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	-930544	-	TSC_hg19_v1_chr3_-_99595018 EU531865 EU531866 BC027860 AK225855 AK096195 NM_014890	43955	-	BC017987 NM_001042459 NM_182909 AF329092 AX776292	282316	-	AK300704 NM_001167924	282737	+	AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26##AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##EU531865|FILIP1L|11259|filamin A interacting protein 1-like##EU531866|FILIP1L|11259|filamin A interacting protein 1-like##BC027860|FILIP1L|11259|filamin A interacting protein 1-like##AK225855|FILIP1L|11259|filamin A interacting protein 1-like##AK096195|FILIP1L|11259|filamin A interacting protein 1-like##NM_014890|FILIP1L|11259|filamin A interacting protein 1-like##BC017987|FILIP1L|11259|filamin A interacting protein 1-like##NM_001042459|FILIP1L|11259|filamin A interacting protein 1-like##NM_182909|FILIP1L|11259|filamin A interacting protein 1-like##AF329092|FILIP1L|11259|filamin A interacting protein 1-like##AX776292|FILIP1L|11259|filamin A interacting protein 1-like##AK300704|C3orf26|84319|chromosome 3 open reading frame 26##NM_001167924|C3orf26|84319|chromosome 3 open reading frame 26	0.999103	0.986482	CTCF.p2:-17:0.986	denovo_WM_7:46:0.310	denovo_WM_7:47:0.310	denovo_WM_7:48:0.310
chr2	37012478	37012593	reg1002575.p1	9.558	+	TSC_hg19_v1_chr2_+_36923944 BC061519 AK056772 AK292149 AY358338 AL832679 AF063833 BC128260	-88575	+	NM_001177969 NM_001177970 NM_001177971 NM_001177972 NM_053276 AK299426 TSC_hg19_v1_chr2_+_36923849	-88689	+	AF113124 BC064484 BC054043 BC089390 BC047020 BC110386 TSC_hg19_v1_chr2_-_36825294 BC037566 BC018032 AB076184 NM_001042548 NM_005102	-187253	-	TSC_hg19_v1_chr2_-_37076016 BC015406	63495	-	AB590635 BC106879 AJ223814 BC106878 NM_003162 TSC_hg19_v1_chr2_-_37193662	181100	-	TSC_hg19_v1_chr2_-_37297372 BX538008	284909	-	BC061519|VIT|5212|vitrin##AK056772|VIT|5212|vitrin##AK292149|VIT|5212|vitrin##AY358338|VIT|5212|vitrin##AL832679|VIT|5212|vitrin##AF063833|VIT|5212|vitrin##BC128260|VIT|5212|vitrin##NM_001177969|VIT|5212|vitrin##NM_001177970|VIT|5212|vitrin##NM_001177971|VIT|5212|vitrin##NM_001177972|VIT|5212|vitrin##NM_053276|VIT|5212|vitrin##AK299426|VIT|5212|vitrin##AF113124|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC064484|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC054043|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC089390|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC047020|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC110386|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC037566|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC018032|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##AB076184|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_001042548|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_005102|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC015406|STRN|6801|striatin, calmodulin binding protein##BC106879|STRN|6801|striatin, calmodulin binding protein##AJ223814|STRN|6801|striatin, calmodulin binding protein##BC106878|STRN|6801|striatin, calmodulin binding protein##NM_003162|STRN|6801|striatin, calmodulin binding protein##BX538008|HEATR5B|54497|HEAT repeat containing 5B	0.102121	0.999109	CTCF.p2:-22:0.999
chr20	46018977	46019091	reg1002059.p2	9.557	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-33546	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-42387	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-91465	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	111588	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	111650	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	395718	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	1.97223	0.0	denovo_WM_7:42:0.756	denovo_WM_7:57:0.770
chr2	186896115	186896250	reg1002145.p1	9.557	+	NM_173651	-292828	+	BC136602 TSC_hg19_v1_chr2_+_185463544	-1432690	+	BC142612 TSC_hg19_v1_chr2_+_185463319	-1432877	+	TSC_hg19_v1_chr2_+_187350986 AF220184 NM_018471 AK298615 AK001901 AK297658 AF289586	454748	+	TSC_hg19_v1_chr2_+_187351010 BC012336 AF161421 AF109366	454828	+	TSC_hg19_v1_chr2_+_187351051 BC021102 EU176353 AB587394 CU676824	454888	+	NM_173651|FSIP2|401024|fibrous sheath interacting protein 2##BC136602|ZNF804A|91752|zinc finger protein 804A##BC142612|ZNF804A|91752|zinc finger protein 804A##AF220184|ZC3H15|55854|zinc finger CCCH-type containing 15##NM_018471|ZC3H15|55854|zinc finger CCCH-type containing 15##AK298615|ZC3H15|55854|zinc finger CCCH-type containing 15##AK001901|ZC3H15|55854|zinc finger CCCH-type containing 15##AK297658|ZC3H15|55854|zinc finger CCCH-type containing 15##AF289586|ZC3H15|55854|zinc finger CCCH-type containing 15##BC012336|ZC3H15|55854|zinc finger CCCH-type containing 15##AF161421|ZC3H15|55854|zinc finger CCCH-type containing 15##AF109366|ZC3H15|55854|zinc finger CCCH-type containing 15##BC021102|ZC3H15|55854|zinc finger CCCH-type containing 15##EU176353|ZC3H15|55854|zinc finger CCCH-type containing 15	0.980457	0.0	denovo_WM_7:-3:0.480	denovo_WM_7:-4:0.431
chr12	121695705	121695885	reg1002507.p2	9.548	+	TSC_hg19_v1_chr12_+_121647948 BC035845 Y07684 BC033826 AB464108 DQ890906 DQ894059 CU689766 AK225604 BT019738 BT019739 AK301080 AF000234	-47793	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	-47903	+	U83993 NM_002560	-48134	+	AF101264 TSC_hg19_v1_chr12_-_121712132 AK024748	16266	-	TSC_hg19_v1_chr12_-_121734513 BC026060 AF140507 AF425668 AK300865	38712	-	TSC_hg19_v1_chr12_-_121734549 NM_172226	38830	-	BC035845|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##Y07684|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC033826|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ890906|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ894059|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK225604|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019738|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019739|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK301080|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AF000234|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AF101264|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AK024748|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##BC026060|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF140507|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF425668|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AK300865|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172226|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta	0.999377	0.0	
chr17	77719850	77719954	reg1000124.p1	9.547	+	AY230663 BC041453 NM_178543 AY358622	-15013	+	NM_001082575	-241340	-	TSC_hg19_v1_chr17_+_77071020 AK025518 NM_001042573 AK301115 AF512564	-648872	+	TSC_hg19_v1_chr17_+_77751988 AX721084 AX721090 NM_005189 NM_032647 BC004252 BC119759 BC119760 AB463499 CU678640 EU446542	32079	+	TSC_hg19_v1_chr17_-_77770845 AB384672 CU679333 EU446831 BC008937 BC019289 AF266479 BC009376 AF174482 AK074560 NM_020649	51005	-	AY390430 CU677141 AB463501 BC014967 TSC_hg19_v1_chr17_-_77813168 NM_003655 EU439707 AF013956	93240	-	AY230663|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##BC041453|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##NM_178543|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##AY358622|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##NM_001082575|RBFOX3|146713|RNA binding protein, fox-1 homolog (C. elegans) 3##AK025518|ENGASE|64772|endo-beta-N-acetylglucosaminidase##NM_001042573|ENGASE|64772|endo-beta-N-acetylglucosaminidase##AK301115|ENGASE|64772|endo-beta-N-acetylglucosaminidase##AF512564|ENGASE|64772|endo-beta-N-acetylglucosaminidase##NM_005189|CBX2|84733|chromobox homolog 2##NM_032647|CBX2|84733|chromobox homolog 2##BC004252|CBX2|84733|chromobox homolog 2##BC119759|CBX2|84733|chromobox homolog 2##BC119760|CBX2|84733|chromobox homolog 2##EU446542|CBX2|84733|chromobox homolog 2##EU446831|CBX8|57332|chromobox homolog 8##BC008937|CBX8|57332|chromobox homolog 8##BC019289|CBX8|57332|chromobox homolog 8##AF266479|CBX8|57332|chromobox homolog 8##BC009376|CBX8|57332|chromobox homolog 8##AF174482|CBX8|57332|chromobox homolog 8##AK074560|CBX8|57332|chromobox homolog 8##NM_020649|CBX8|57332|chromobox homolog 8##AY390430|CBX4|8535|chromobox homolog 4##BC014967|CBX4|8535|chromobox homolog 4##NM_003655|CBX4|8535|chromobox homolog 4##EU439707|CBX4|8535|chromobox homolog 4##AF013956|CBX4|8535|chromobox homolog 4	0.994484	0.0	denovo_WM_7:100:0.588	denovo_WM_7:101:0.205
chr7	6176356	6176536	reg1002747.p1	9.545	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-31848	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-31903	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-77599	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	135785	-	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	212064	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	237781	+	AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	1.036578	0.0	denovo_WM_7:0:0.617	denovo_WM_7:1:0.239
chr12	110869446	110869626	reg1000291.p2	9.543	+	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	-28025	-	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	-28097	-	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-150168	+	TSC_hg19_v1_chr12_-_110888079 AF006086	18549	-	BC078162 TSC_hg19_v1_chr12_-_110888104	18565	-	TSC_hg19_v1_chr12_-_110888123 BC067747 AL357196	18582	-	BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##BC078162|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##BC067747|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	0.091969	0.0	
chr1	230344729	230344878	reg1002561.p1	9.541	+	TSC_hg19_v1_chr1_+_230203016 AK296886 AK290048 AK304029 AB591001 X85019	-141807	+	TSC_hg19_v1_chr1_+_230202957 BC041120 NM_004481	-141861	+	TSC_hg19_v1_chr1_+_229761993 BC114559 BC114963	-582789	+	BC150638 NM_024554	168587	-	TSC_hg19_v1_chr1_+_230778205 NM_001145036 NM_007357	433393	+	TSC_hg19_v1_chr1_+_230778250 AL832190 BC014960 AK302791	433430	+	AK296886|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK290048|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK304029|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##X85019|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC041120|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##NM_004481|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC114559|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC114963|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC150638|PGBD5|79605|piggyBac transposable element derived 5##NM_024554|PGBD5|79605|piggyBac transposable element derived 5##NM_001145036|COG2|22796|component of oligomeric golgi complex 2##NM_007357|COG2|22796|component of oligomeric golgi complex 2##AL832190|COG2|22796|component of oligomeric golgi complex 2##BC014960|COG2|22796|component of oligomeric golgi complex 2##AK302791|COG2|22796|component of oligomeric golgi complex 2	1.8537	0.0	denovo_WM_7:-9:0.395	denovo_WM_7:-10:0.348	denovo_WM_7:17:0.480
chr11	75943277	75943416	reg1003304.p1	9.539	+	TSC_hg19_v1_chr11_-_75921806 AK075540	-21542	-	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	-25834	-	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-417068	+	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	148662	-	TSC_hg19_v1_chr11_+_76092383 AK125821 BC040665 AK095089	149077	+	TSC_hg19_v1_chr11_-_76155721 AK054718	212379	-	AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK125821|LOC100506127|100506127|putative uncharacterized protein FLJ37770-like##BC040665|LOC100506127|100506127|putative uncharacterized protein FLJ37770-like##AK095089|LOC100506127|100506127|putative uncharacterized protein FLJ37770-like	0.90301	0.0	denovo_WM_7:19:0.878
chr19	46320720	46320890	reg1000062.p2	9.535	+	BC057785 AB587490 AM393487 BC146683 BC136351 BC136352 BC144018 AK098837 AK223347 AL136761 NM_030785	-2287	-	TSC_hg19_v1_chr19_-_46296053 NM_004943	-24874	-	L19267 TSC_hg19_v1_chr19_-_46295709	-25127	-	AF049526 TSC_hg19_v1_chr19_-_46366406 Y10931 AB210010 BC030214 AK300252 BX649165 AK130602 NM_004819	45639	-	BC016024 NM_004497 TSC_hg19_v1_chr19_+_46367583 AK223473 AB464526 BT006720 CU677549 L12141	46810	+	AK223622 TSC_hg19_v1_chr19_-_46389398 AK315060 BC038222 NM_015649 AY278022 BC039002	68557	-	BC057785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AM393487|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC146683|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136351|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136352|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC144018|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK098837|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK223347|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AL136761|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##NM_030785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##NM_004943|DMWD|1762|dystrophia myotonica, WD repeat containing##L19267|DMWD|1762|dystrophia myotonica, WD repeat containing##AF049526|SYMPK|8189|symplekin##Y10931|SYMPK|8189|symplekin##AB210010|SYMPK|8189|symplekin##BC030214|SYMPK|8189|symplekin##AK300252|SYMPK|8189|symplekin##BX649165|SYMPK|8189|symplekin##AK130602|SYMPK|8189|symplekin##NM_004819|SYMPK|8189|symplekin##BC016024|FOXA3|3171|forkhead box A3##NM_004497|FOXA3|3171|forkhead box A3##AK223473|FOXA3|3171|forkhead box A3##BT006720|FOXA3|3171|forkhead box A3##L12141|FOXA3|3171|forkhead box A3##AK223622|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AK315060|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC038222|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##NM_015649|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AY278022|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC039002|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1	0.010946	0.0	
chr6_mann_hap4	4110901	4111019	reg1001651.p1	9.535	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.981984	0.0	denovo_WM_7:35:0.501	denovo_WM_7:36:0.490	denovo_WM_7:50:0.421	denovo_WM_7:51:0.570
chr8	42997595	42997731	reg1002224.p1	9.534	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-2016	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-2030	+	TSC_hg19_v1_chr8_+_42995606 NM_152419	-2083	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	149942	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	5175832	+	TSC_hg19_v1_chr8_+_48173521 AK303579	5175856	+	BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_152419|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146	0.040854	0.0	
chrX	42814946	42815089	reg1002277.p2	9.534	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	-1032692	-	BC070180 NM_080817 AK122626 AK313702 AL832460	-1231597	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-1266750	+	BC044787 TSC_hg19_v1_chrX_+_43514289	699206	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	700397	+	TSC_hg19_v1_chrX_+_43515457 M68840	700463	+	AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A##M68840|MAOA|4128|monoamine oxidase A	0.998428	0.0	denovo_WM_7:-7:0.229	denovo_WM_7:-8:0.229	denovo_WM_7:-9:0.229	denovo_WM_7:-10:0.229
chr16	81774132	81774299	reg1000334.p2	9.533	+	AY172689 NM_030629	-245262	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	-295382	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-425565	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	38682	+	TSC_hg19_v1_chr16_+_81812901 AB208914	38687	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	38715	+	AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	0.0	0.0	
chr1	169874234	169874400	reg1002701.p2	9.532	+	TSC_hg19_v1_chr1_-_169863059 NM_020423 NM_181093	-11255	-	AL117233 TSC_hg19_v1_chr1_-_169863038 BC014662 AK292507	-11304	-	AL354614 NM_018186	-109768	+	AK122897 NM_001204517	163738	-	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	169426	-	BC157860 BC171858 NM_001136107	240870	+	NM_020423|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##NM_181093|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL117233|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##BC014662|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AK292507|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL354614|C1orf112|55732|chromosome 1 open reading frame 112##NM_018186|C1orf112|55732|chromosome 1 open reading frame 112##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B	0.99613	0.0	
chr22	42370852	42371003	reg1002383.p2	9.531	+	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	-27804	-	EU035297 NM_001110215	-34705	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-48128	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	1981	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	23848	+	AB528190 CU013127 CU013415 DQ891874 DQ895062 CR456527 M38083 BC000095 TSC_hg19_v1_chr22_-_42466570	95508	-	CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like##CU013127|NAGA|4668|N-acetylgalactosaminidase, alpha-##CU013415|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ891874|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ895062|NAGA|4668|N-acetylgalactosaminidase, alpha-##CR456527|NAGA|4668|N-acetylgalactosaminidase, alpha-##M38083|NAGA|4668|N-acetylgalactosaminidase, alpha-##BC000095|NAGA|4668|N-acetylgalactosaminidase, alpha-	1.986855	0.0	denovo_WM_7:-41:0.383	denovo_WM_7:-42:0.322	denovo_WM_7:-57:0.512	denovo_WM_7:-59:0.313
chr1	28157119	28157260	reg1002518.p1	9.529	+	TSC_hg19_v1_chr1_+_28099762 NM_177424 AF123769 AL035306 AK297585 BC046999 AB464269 CU692348 CR407620 AK299982	-57418	+	TSC_hg19_v1_chr1_+_28052467 BC025768 NM_001143912 NM_001143913 NM_001143914 NM_001143915 NM_152660 AK290120 AK301672 AK098318 AK310165 AL035307 AL035309 CU693060	-104661	+	TSC_hg19_v1_chr1_-_27998734 NM_002038 NM_022872 NM_022873	-158450	-	NM_014110 TSC_hg19_v1_chr1_+_28157314	97	+	TSC_hg19_v1_chr1_+_28157334 AF061958 AK292077 AK297771 AK304619 NM_002713 NM_138558 AK307570 BC093017	139	+	AF126488 AX775985 TSC_hg19_v1_chr1_+_28157335 AK313814 AB464098 U14575	152	+	NM_177424|STX12|23673|syntaxin 12##AF123769|STX12|23673|syntaxin 12##AL035306|STX12|23673|syntaxin 12##AK297585|STX12|23673|syntaxin 12##BC046999|STX12|23673|syntaxin 12##CR407620|STX12|23673|syntaxin 12##AK299982|STX12|23673|syntaxin 12##BC025768|FAM76A|199870|family with sequence similarity 76, member A##NM_001143912|FAM76A|199870|family with sequence similarity 76, member A##NM_001143913|FAM76A|199870|family with sequence similarity 76, member A##NM_001143914|FAM76A|199870|family with sequence similarity 76, member A##NM_001143915|FAM76A|199870|family with sequence similarity 76, member A##NM_152660|FAM76A|199870|family with sequence similarity 76, member A##AK290120|FAM76A|199870|family with sequence similarity 76, member A##AK301672|FAM76A|199870|family with sequence similarity 76, member A##AK098318|FAM76A|199870|family with sequence similarity 76, member A##AK310165|FAM76A|199870|family with sequence similarity 76, member A##AL035307|FAM76A|199870|family with sequence similarity 76, member A##AL035309|FAM76A|199870|family with sequence similarity 76, member A##NM_002038|IFI6|2537|interferon, alpha-inducible protein 6##NM_022872|IFI6|2537|interferon, alpha-inducible protein 6##NM_022873|IFI6|2537|interferon, alpha-inducible protein 6##NM_014110|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AF061958|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK292077|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK297771|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK304619|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##NM_002713|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##NM_138558|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK307570|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##BC093017|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AF126488|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AX775985|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK313814|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##U14575|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8	0.81881	0.057919	denovo_WM_7:-7:0.797
chr6_cox_hap2	3097874	3098010	reg1002343.p2	9.529	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997902	0.0	denovo_WM_7:12:0.298	denovo_WM_7:13:0.298	denovo_WM_7:14:0.298
chr13	86191876	86192047	reg1002595.p1	9.526	+	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-1735461	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-1735536	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-5276897	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	181478	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	2132908	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	5858943	+	AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5	1.058361	0.0	denovo_WM_7:-31:0.918
chrX	23802593	23802767	reg1002337.p1	9.526	+	TSC_hg19_v1_chrX_+_23801432 M55580 AY841998 AB464243 AM392717 BT006825 CR450294	-1231	+	NM_002970 TSC_hg19_v1_chrX_+_23801289 AK310078 BC008424 AK312162 AK310094 M77693 AL050290 BC002503 AK315888	-1368	+	TSC_hg19_v1_chrX_-_23761415 NM_001033583 NM_001037171	-41270	-	TSC_hg19_v1_chrX_-_23855464 AK303908 D28399	52780	-	TSC_hg19_v1_chrX_-_23926052 AY359114 AK311865 AF061264 BC016814 BC002333 BC010102 NM_024122	123330	-	AK058173 NM_001169574 NM_152761 BC117344 BC117346 BC144007	123486	+	M55580|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AY841998|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BT006825|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##CR450294|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##NM_002970|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK310078|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC008424|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK312162|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##M77693|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AL050290|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC002503|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK315888|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##NM_001033583|ACOT9|23597|acyl-CoA thioesterase 9##NM_001037171|ACOT9|23597|acyl-CoA thioesterase 9##AK303908|RPL9|6133|ribosomal protein L9##AY359114|APOO|79135|apolipoprotein O##AK311865|APOO|79135|apolipoprotein O##AF061264|APOO|79135|apolipoprotein O##BC016814|APOO|79135|apolipoprotein O##BC002333|APOO|79135|apolipoprotein O##BC010102|APOO|79135|apolipoprotein O##NM_024122|APOO|79135|apolipoprotein O##AK058173|CXorf58|254158|chromosome X open reading frame 58##NM_001169574|CXorf58|254158|chromosome X open reading frame 58##NM_152761|CXorf58|254158|chromosome X open reading frame 58##BC117344|CXorf58|254158|chromosome X open reading frame 58##BC117346|CXorf58|254158|chromosome X open reading frame 58##BC144007|CXorf58|254158|chromosome X open reading frame 58	0.998517	0.0	
chr11	128826426	128826565	reg1001449.p2	9.525	+	NM_001195195 NM_001251964 NM_022112	-13202	-	AB527772 AY302135 NM_001195194 BC069399 BC069426	-18745	-	AK125634 TSC_hg19_v1_chr11_-_128776110	-50381	-	AB018255 AY194287 TSC_hg19_v1_chr11_-_128894084 AB079856 NM_014715	67566	-	EF127492 NM_001142685	235597	-	AF031924 BC069378 NM_003658 BC111432 BC111572 AJ243512 AB527829	419386	+	NM_001195195|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_001251964|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_022112|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##AY302135|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_001195194|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##BC069399|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##BC069426|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##AK125634|C11orf45|219833|chromosome 11 open reading frame 45##AB018255|ARHGAP32|9743|Rho GTPase activating protein 32##AY194287|ARHGAP32|9743|Rho GTPase activating protein 32##AB079856|ARHGAP32|9743|Rho GTPase activating protein 32##NM_014715|ARHGAP32|9743|Rho GTPase activating protein 32##EF127492|ARHGAP32|9743|Rho GTPase activating protein 32##NM_001142685|ARHGAP32|9743|Rho GTPase activating protein 32##AF031924|BARX2|8538|BARX homeobox 2##BC069378|BARX2|8538|BARX homeobox 2##NM_003658|BARX2|8538|BARX homeobox 2##BC111432|BARX2|8538|BARX homeobox 2##BC111572|BARX2|8538|BARX homeobox 2##AJ243512|BARX2|8538|BARX homeobox 2	0.0	0.953966	CTCF.p2:43:0.954
chr8	11108446	11108602	reg1000138.p1	9.525	+	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	-49659	-	TSC_hg19_v1_chr8_-_10697386 AF205718 AF418553 AJ344104	-411115	-	AY238941 AY523566 BC093762 BC143382 NM_017884 TSC_hg19_v1_chr8_-_10697379 AY029161 AK313715 BC015479 AK296724	-411190	-	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	33488	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	33831	+	AJ291677 NM_054028 BC131696	79986	+	AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AF205718|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AF418553|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ344104|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY238941|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY523566|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC093762|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC143382|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##NM_017884|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AK313715|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC015479|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5	0.0	0.0	
chr10	93733689	93733804	reg1002006.p1	9.523	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-50054	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-50230	+	AK315427 BC025966 AK075410 NM_152429	-64526	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	269273	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	317090	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	317308	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.993006	0.0	
chr22	47159211	47159389	reg1002465.p2	9.523	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-700	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-25145	-	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	-25221	-	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	868203	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	1725980	+	AK125256 NM_015381 AK123443 AY358847	1812861	+	NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##AK093107|LOC284930|284930|uncharacterized LOC284930##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5	1.976162	0.0	denovo_WM_7:0:0.318	denovo_WM_7:0:0.257	denovo_WM_7:17:0.247	denovo_WM_7:18:0.309
chr7	68674001	68674137	reg1002878.p1	9.522	+	TSC_hg19_v1_chr7_+_66767656 BC026058	-1906412	+	TSC_hg19_v1_chr7_+_66767642 AK307290	-1906421	+	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	-1906461	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	389767	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	390260	+	TSC_hg19_v1_chr7_+_69064580 BC011643	390519	+	BC026058|STAG3L4|64940|stromal antigen 3-like 4##AK307290|STAG3L4|64940|stromal antigen 3-like 4##AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##BC011643|AUTS2|26053|autism susceptibility candidate 2	0.995795	0.0	
chr16	17257913	17258027	reg1002111.p2	9.521	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-931440	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-931482	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-931488	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	306835	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1315421	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1540126	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	1.980779	0.0	denovo_WM_7:-50:0.526	denovo_WM_7:-51:0.264
chr2	43453866	43453993	reg1002501.p1	9.518	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-187	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-199	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-584	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	369219	-	TSC_hg19_v1_chr2_+_43864411 BC063310	410484	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	410510	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	0.0	0.233383	CTCF.p2:85:0.233
chr7	102030450	102030622	reg1002446.p1	9.517	+	TSC_hg19_v1_chr7_+_102023018 AK098134	-7503	+	TSC_hg19_v1_chr7_+_102004338 BC048257 BC066362	-26184	+	TSC_hg19_v1_chr7_+_102004329 NM_001242713 BC063572 AK098276	-26225	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	6306	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	43441	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	43505	+	NM_001242713|LOC100289561|100289561|uncharacterized LOC100289561##BC063572|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##AK098276|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2	1.944709	0.0	denovo_WM_7:25:0.944	denovo_WM_7:43:0.465	denovo_WM_7:54:0.256
chr3	119820567	119820721	reg1002295.p2	9.515	+	TSC_hg19_v1_chr3_+_119813618 BC035247	-6974	+	TSC_hg19_v1_chr3_-_119813270 BC012760 NM_001146156 NM_002093	-7493	-	BC000251 AK290897 TSC_hg19_v1_chr3_-_119812684	-8023	-	NM_001168271 NM_153002	142497	-	TSC_hg19_v1_chr3_-_120068162 AB528173 AM393236 BC013757 NM_001099678	247497	-	TSC_hg19_v1_chr3_-_120169846 AB527652 D89937 BC000055 U06863 AK300356 AK289388 AK291138 AK311050 AK300436 BX647421 AK312261 NM_007085	349193	-	BC012760|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001146156|GSK3B|2932|glycogen synthase kinase 3 beta##NM_002093|GSK3B|2932|glycogen synthase kinase 3 beta##BC000251|GSK3B|2932|glycogen synthase kinase 3 beta##AK290897|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001168271|GPR156|165829|G protein-coupled receptor 156##NM_153002|GPR156|165829|G protein-coupled receptor 156##AM393236|LRRC58|116064|leucine rich repeat containing 58##BC013757|LRRC58|116064|leucine rich repeat containing 58##NM_001099678|LRRC58|116064|leucine rich repeat containing 58##BC000055|FSTL1|11167|follistatin-like 1##U06863|FSTL1|11167|follistatin-like 1##AK300356|FSTL1|11167|follistatin-like 1##AK289388|FSTL1|11167|follistatin-like 1##AK291138|FSTL1|11167|follistatin-like 1##AK311050|FSTL1|11167|follistatin-like 1##AK300436|FSTL1|11167|follistatin-like 1##BX647421|FSTL1|11167|follistatin-like 1##AK312261|FSTL1|11167|follistatin-like 1##NM_007085|FSTL1|11167|follistatin-like 1	1.99545	0.0	denovo_WM_7:0:0.643	denovo_WM_7:14:0.395	denovo_WM_7:15:0.407
chr15	56538261	56538402	reg1002635.p1	9.514	+	TSC_hg19_v1_chr15_-_56535479 NM_022841	-2849	-	TSC_hg19_v1_chr15_-_56388663 AL832584	-149634	-	TSC_hg19_v1_chr15_-_56285776 BC035707 AK304394 AY550969 BC152452 BC152562 D42055 NM_006154	-252536	-	TSC_hg19_v1_chr15_+_56657623 AK294960 BC028119 NM_198524 AL832050	119298	+	TSC_hg19_v1_chr15_-_56757262 BC031046 AK310029 BC012554 BC034991 AK002084 NM_018365	218955	-	TSC_hg19_v1_chr15_-_57025690 AB046804 BC053649 BC064359 AK310882 AK289739 BC130451 BC136412	487381	-	NM_022841|RFX7|64864|regulatory factor X, 7##AL832584|RFX7|64864|regulatory factor X, 7##BC035707|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AK304394|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AY550969|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC152452|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC152562|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##D42055|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_006154|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AK294960|TEX9|374618|testis expressed 9##BC028119|TEX9|374618|testis expressed 9##NM_198524|TEX9|374618|testis expressed 9##AL832050|TEX9|374618|testis expressed 9##BC031046|MNS1|55329|meiosis-specific nuclear structural 1##BC012554|MNS1|55329|meiosis-specific nuclear structural 1##BC034991|MNS1|55329|meiosis-specific nuclear structural 1##AK002084|MNS1|55329|meiosis-specific nuclear structural 1##NM_018365|MNS1|55329|meiosis-specific nuclear structural 1##AB046804|ZNF280D|54816|zinc finger protein 280D##BC053649|ZNF280D|54816|zinc finger protein 280D##BC064359|ZNF280D|54816|zinc finger protein 280D##AK310882|ZNF280D|54816|zinc finger protein 280D##AK289739|ZNF280D|54816|zinc finger protein 280D##BC130451|ZNF280D|54816|zinc finger protein 280D##BC136412|ZNF280D|54816|zinc finger protein 280D	0.0	1.49607	CTCF.p2:58:0.540	CTCF.p2:93:0.956
chr17	7766062	7766201	reg1002860.p1	9.512	+	TSC_hg19_v1_chr17_+_7761320 BC060779 AK289520	-4786	+	BC033861 NM_032356 BC051846 TSC_hg19_v1_chr17_-_7761246	-4923	-	AK057061 NM_144607	-5068	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	21980	+	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	25970	+	TSC_hg19_v1_chr17_+_7812703 AK096555	46629	+	BC060779|CYB5D1|124637|cytochrome b5 domain containing 1##AK289520|CYB5D1|124637|cytochrome b5 domain containing 1##BC033861|LSMD1|84316|LSM domain containing 1##NM_032356|LSMD1|84316|LSM domain containing 1##BC051846|LSMD1|84316|LSM domain containing 1##AK057061|CYB5D1|124637|cytochrome b5 domain containing 1##NM_144607|CYB5D1|124637|cytochrome b5 domain containing 1##NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3	1.985194	0.988594	CTCF.p2:17:0.989	denovo_WM_7:-46:0.925	denovo_WM_7:-63:0.230	denovo_WM_7:-64:0.230	denovo_WM_7:-65:0.230	denovo_WM_7:-66:0.230
chr2	207646372	207646498	reg1003079.p1	9.511	+	AK021557 TSC_hg19_v1_chr2_+_207630326 AK001516 AF223470 AL833877	-16112	+	NM_001136193 NM_001136194 NM_014929	-16324	+	AK292386 BC033509 BC088356 AK302250 AK309144 NM_001039845 AK308257	-16405	-	BC112076 BC112078 NM_173077 AJ422118	157865	+	AB015132 NM_003709 TSC_hg19_v1_chr2_-_208030685 AK314439	384221	-	BC012919 TSC_hg19_v1_chr2_-_208031680	385190	-	AK021557|FASTKD2|22868|FAST kinase domains 2##AK001516|FASTKD2|22868|FAST kinase domains 2##AF223470|FASTKD2|22868|FAST kinase domains 2##AL833877|FASTKD2|22868|FAST kinase domains 2##NM_001136193|FASTKD2|22868|FAST kinase domains 2##NM_001136194|FASTKD2|22868|FAST kinase domains 2##NM_014929|FASTKD2|22868|FAST kinase domains 2##AK292386|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##BC033509|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##BC088356|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##AK302250|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##AK309144|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##NM_001039845|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##AK308257|MDH1B|130752|malate dehydrogenase 1B, NAD (soluble)##BC112076|CPO|130749|carboxypeptidase O##BC112078|CPO|130749|carboxypeptidase O##NM_173077|CPO|130749|carboxypeptidase O##AJ422118|CPO|130749|carboxypeptidase O##AB015132|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_003709|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AK314439|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##BC012919|KLF7|8609|Kruppel-like factor 7 (ubiquitous)	1.05568	0.489695	CTCF.p2:7:0.490	denovo_WM_7:-27:0.307	denovo_WM_7:-28:0.302	denovo_WM_7:-29:0.300
chr3	47821577	47821718	reg1002156.p1	9.510	+	AK294621 NM_001206942 NM_001206945	-199918	-	AB463496 AF059274 TSC_hg19_v1_chr3_-_47620336 NM_001206943 NM_001206944 NM_006574	-201358	-	DQ787088 BC000623 BC014204 TSC_hg19_v1_chr3_-_47555203 AK225721 AK000218 AK298202 NM_001031703	-266505	-	TSC_hg19_v1_chr3_-_47823302 EU832157 EU832251	1642	-	TSC_hg19_v1_chr3_-_47823315 BC039843 U66615	1671	-	BC050564 TSC_hg19_v1_chr3_-_47823334	1687	-	AK294621|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206942|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206945|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##AF059274|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206943|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206944|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_006574|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##DQ787088|C3orf75|54859|chromosome 3 open reading frame 75##BC000623|C3orf75|54859|chromosome 3 open reading frame 75##BC014204|C3orf75|54859|chromosome 3 open reading frame 75##AK225721|C3orf75|54859|chromosome 3 open reading frame 75##AK000218|C3orf75|54859|chromosome 3 open reading frame 75##AK298202|C3orf75|54859|chromosome 3 open reading frame 75##NM_001031703|C3orf75|54859|chromosome 3 open reading frame 75##EU832157|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##EU832251|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC039843|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##U66615|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC050564|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	1.975698	0.0	denovo_WM_7:9:0.488	denovo_WM_7:10:0.326	denovo_WM_7:25:0.329	denovo_WM_7:26:0.492
chr3	95126686	95126866	reg1002562.p1	9.510	+	AK122674 NM_001195643	-1344710	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-1344932	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-1345032	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	1406654	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	2031695	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	2356824	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.996572	0.0	
chr13	29098009	29098189	reg1001351.p1	9.506	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	-28855	-	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	-385433	+	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	-423412	-	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	135109	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	135195	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	194956	-	BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3	1.996974	0.0	
chr17	74724246	74724382	reg1002194.p1	9.506	+	TSC_hg19_v1_chr17_+_74722935 NM_001080510 NM_001206983 NM_001206984 NM_001206985 NM_001206986 NM_001206987 BC033998 BC045819 BC106939	-1345	+	TSC_hg19_v1_chr17_-_74722857 EF527406 EF527407 NM_001081461 NM_015167	-1453	-	TSC_hg19_v1_chr17_-_74722680 BC047003 AK294816	-1600	-	TSC_hg19_v1_chr17_+_74732715 AF015190 NM_001242534 AF015186 AF015187	8467	+	AB385010 BT007250 CU688224 DQ891210 DQ894393 X62447 BC001303 BC000339 M90104 AK223252 BC066958 BC070086 AK092489 AK093626 AK097069 AK098209 AK123712 AK126432 AK297813 AX748231 TSC_hg19_v1_chr17_-_74733414	9015	-	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	9142	-	NM_001080510|METTL23|124512|methyltransferase like 23##NM_001206983|METTL23|124512|methyltransferase like 23##NM_001206984|METTL23|124512|methyltransferase like 23##NM_001206985|METTL23|124512|methyltransferase like 23##NM_001206986|METTL23|124512|methyltransferase like 23##NM_001206987|METTL23|124512|methyltransferase like 23##BC033998|METTL23|124512|methyltransferase like 23##BC045819|METTL23|124512|methyltransferase like 23##BC106939|METTL23|124512|methyltransferase like 23##EF527406|JMJD6|23210|jumonji domain containing 6##EF527407|JMJD6|23210|jumonji domain containing 6##NM_001081461|JMJD6|23210|jumonji domain containing 6##NM_015167|JMJD6|23210|jumonji domain containing 6##BC047003|JMJD6|23210|jumonji domain containing 6##AK294816|JMJD6|23210|jumonji domain containing 6##AF015190|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242534|MFSD11|79157|major facilitator superfamily domain containing 11##AF015186|MFSD11|79157|major facilitator superfamily domain containing 11##AF015187|MFSD11|79157|major facilitator superfamily domain containing 11##BT007250|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ891210|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ894393|SRSF2|6427|serine/arginine-rich splicing factor 2##X62447|SRSF2|6427|serine/arginine-rich splicing factor 2##BC001303|SRSF2|6427|serine/arginine-rich splicing factor 2##BC000339|SRSF2|6427|serine/arginine-rich splicing factor 2##M90104|SRSF2|6427|serine/arginine-rich splicing factor 2##AK223252|SRSF2|6427|serine/arginine-rich splicing factor 2##BC066958|SRSF2|6427|serine/arginine-rich splicing factor 2##BC070086|SRSF2|6427|serine/arginine-rich splicing factor 2##AK092489|SRSF2|6427|serine/arginine-rich splicing factor 2##AK093626|SRSF2|6427|serine/arginine-rich splicing factor 2##AK097069|SRSF2|6427|serine/arginine-rich splicing factor 2##AK098209|SRSF2|6427|serine/arginine-rich splicing factor 2##AK123712|SRSF2|6427|serine/arginine-rich splicing factor 2##AK126432|SRSF2|6427|serine/arginine-rich splicing factor 2##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2	0.999446	0.0	denovo_WM_7:15:0.722
chrX	69884696	69884810	reg1002629.p2	9.505	+	TSC_hg19_v1_chrX_+_69674948 AK303377 NM_001166278	-209819	+	TSC_hg19_v1_chrX_+_69672415 AK304020 AK316518	-212347	+	TSC_hg19_v1_chrX_+_69672143 AB033058 NM_020730	-212578	+	AK057523 AK292471 BC036016 NM_001003811 NM_031276	243810	-	AF320612 BC033816 AX721169 BC021242 AK074865 AK075014 NM_001048164 NM_032803	266196	-	BT007203 TSC_hg19_v1_chrX_-_70288224 BC080535 AF171229 BC103847 BC103848 BC020559 NM_013346 AK312977	403447	-	AK303377|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_001166278|DLG3|1741|discs, large homolog 3 (Drosophila)##AK304020|DLG3|1741|discs, large homolog 3 (Drosophila)##AK316518|DLG3|1741|discs, large homolog 3 (Drosophila)##AB033058|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_020730|DLG3|1741|discs, large homolog 3 (Drosophila)##AK057523|TEX11|56159|testis expressed 11##AK292471|TEX11|56159|testis expressed 11##BC036016|TEX11|56159|testis expressed 11##NM_001003811|TEX11|56159|testis expressed 11##NM_031276|TEX11|56159|testis expressed 11##AF320612|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##BC033816|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK074865|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK075014|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##NM_001048164|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##NM_032803|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##BT007203|SNX12|29934|sorting nexin 12##BC080535|SNX12|29934|sorting nexin 12##AF171229|SNX12|29934|sorting nexin 12##BC103847|SNX12|29934|sorting nexin 12##BC103848|SNX12|29934|sorting nexin 12##BC020559|SNX12|29934|sorting nexin 12##NM_013346|SNX12|29934|sorting nexin 12##AK312977|SNX12|29934|sorting nexin 12	1.943187	0.851737	CTCF.p2:21:0.852	denovo_WM_7:-39:0.331	denovo_WM_7:-40:0.331	denovo_WM_7:-41:0.331	denovo_WM_7:-106:0.930
chr12	90154653	90154797	reg1002526.p2	9.503	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-51180	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-52038	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-104874	-	BC026075 BC024183 BC027600 BC034491 NM_152638	1194226	-	U59111 TSC_hg19_v1_chr12_-_91398750	1244022	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	1244054	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.105563	0.0	
chr18	24331986	24332166	reg1002511.p2	9.500	+	AF542549 NM_198991	-111769	-	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	-202835	-	NM_001142730 TSC_hg19_v1_chr18_-_24128518	-203566	-	U63623 NM_004028	110478	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	113640	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	390803	-	AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1##AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##U63623|AQP4|361|aquaporin 4##NM_004028|AQP4|361|aquaporin 4##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	2.975639	0.0	denovo_WM_7:16:0.933	denovo_WM_7:31:0.950	denovo_WM_7:46:0.969
chr4	27721631	27721775	reg1001606.p1	9.500	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-859163	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-1136023	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-1229718	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3000296	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3000491	+	TSC_hg19_v1_chr4_+_30722465 AB006756	3000756	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.0	0.0	
chr3	197281560	197281694	reg1002284.p2	9.499	+	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	-256153	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	-256694	-	AK294855 NM_001204387 NM_001204388	-370626	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	1215	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	18574	-	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	73126	-	BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene	0.993797	0.027072	denovo_WM_7:-28:0.737	denovo_WM_7:-30:0.235
chr19	8258648	8258815	reg1001811.p2	9.496	+	AB384635 AB053450 BC153882 NM_032447	-46356	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-140784	+	AK292662 NM_001201359 NM_005624	-141086	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	15517	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	114478	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	127526	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	1.816878	0.0	denovo_WM_7:-47:0.914	denovo_WM_7:-62:0.809
chr6	31588259	31588396	reg1002345.p2	9.494	+	TSC_hg19_v1_chr6_+_31583819 NM_032955 AF299329 EF070982 AF299327 CR542153	-4500	+	TSC_hg19_v1_chr6_+_31583010 NM_004847 BC009474 NM_001623 U49392 AF088038 AK290771 U19713 D86438 EF070983 EU832665 EU832744	-5285	+	AB055881 AB590963 AJ223153 BC052582 BC018752 AF031136 AF031137 AF031138 NM_001145466 NM_001145467 NM_147130	-27698	-	TSC_hg19_v1_chr6_+_31588456 NM_004638 NM_080686	124	+	TSC_hg19_v1_chr6_+_31588488 AB210034 AK302756 AK309774	147	+	BC042295 TSC_hg19_v1_chr6_+_31588523	196	+	NM_032955|AIF1|199|allograft inflammatory factor 1##EF070982|AIF1|199|allograft inflammatory factor 1##AF299327|AIF1|199|allograft inflammatory factor 1##CR542153|AIF1|199|allograft inflammatory factor 1##NM_004847|AIF1|199|allograft inflammatory factor 1##BC009474|AIF1|199|allograft inflammatory factor 1##NM_001623|AIF1|199|allograft inflammatory factor 1##U49392|AIF1|199|allograft inflammatory factor 1##AF088038|AIF1|199|allograft inflammatory factor 1##AK290771|AIF1|199|allograft inflammatory factor 1##U19713|AIF1|199|allograft inflammatory factor 1##D86438|AIF1|199|allograft inflammatory factor 1##EF070983|AIF1|199|allograft inflammatory factor 1##EU832665|AIF1|199|allograft inflammatory factor 1##EU832744|AIF1|199|allograft inflammatory factor 1##AB055881|NCR3|259197|natural cytotoxicity triggering receptor 3##AJ223153|NCR3|259197|natural cytotoxicity triggering receptor 3##BC052582|NCR3|259197|natural cytotoxicity triggering receptor 3##BC018752|NCR3|259197|natural cytotoxicity triggering receptor 3##AF031136|NCR3|259197|natural cytotoxicity triggering receptor 3##AF031137|NCR3|259197|natural cytotoxicity triggering receptor 3##AF031138|NCR3|259197|natural cytotoxicity triggering receptor 3##NM_001145466|NCR3|259197|natural cytotoxicity triggering receptor 3##NM_001145467|NCR3|259197|natural cytotoxicity triggering receptor 3##NM_147130|NCR3|259197|natural cytotoxicity triggering receptor 3##NM_004638|PRRC2A|7916|proline-rich coiled-coil 2A##NM_080686|PRRC2A|7916|proline-rich coiled-coil 2A##AB210034|PRRC2A|7916|proline-rich coiled-coil 2A##AK302756|PRRC2A|7916|proline-rich coiled-coil 2A##AK309774|PRRC2A|7916|proline-rich coiled-coil 2A##BC042295|PRRC2A|7916|proline-rich coiled-coil 2A	0.997015	0.0	denovo_WM_7:10:0.424	denovo_WM_7:11:0.424
chr1	16405421	16405586	reg1002218.p1	9.490	+	AB463624 CU691488 AK094085 BC037394 TSC_hg19_v1_chr1_-_16400144 BC016848 NM_182623	-5446	-	AK098217 NM_001165945	-30220	+	NM_000085 AK292335 BC020873 BC033806 Z30644	-35205	+	EU826606 DQ895231 EU176326 TSC_hg19_v1_chr1_-_16482565 M59371 BC037166 AK296788 NM_004431	77023	-	BC040640 NM_153213 AK091281 AX746893 AK297707	133631	-	NM_030907	158155	-	AK094085|FAM131C|348487|family with sequence similarity 131, member C##BC037394|FAM131C|348487|family with sequence similarity 131, member C##BC016848|FAM131C|348487|family with sequence similarity 131, member C##NM_182623|FAM131C|348487|family with sequence similarity 131, member C##AK098217|CLCNKB|1188|chloride channel Kb##NM_001165945|CLCNKB|1188|chloride channel Kb##NM_000085|CLCNKB|1188|chloride channel Kb##AK292335|CLCNKB|1188|chloride channel Kb##BC020873|CLCNKB|1188|chloride channel Kb##BC033806|CLCNKB|1188|chloride channel Kb##Z30644|CLCNKB|1188|chloride channel Kb##EU826606|EPHA2|1969|EPH receptor A2##DQ895231|EPHA2|1969|EPH receptor A2##EU176326|EPHA2|1969|EPH receptor A2##M59371|EPHA2|1969|EPH receptor A2##BC037166|EPHA2|1969|EPH receptor A2##AK296788|EPHA2|1969|EPH receptor A2##NM_004431|EPHA2|1969|EPH receptor A2##BC040640|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##NM_153213|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##AK091281|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##AK297707|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##NM_030907|RSG1|79363|REM2 and RAB-like small GTPase 1	0.0	0.933015	CTCF.p2:44:0.918
chr14	58748381	58748522	reg1002007.p1	9.489	+	TSC_hg19_v1_chr14_+_58711605 BC038990 D00762 DQ892645 DQ895883 AB464085 BT006711 BT019715 CR456933 CU688640	-36821	+	TSC_hg19_v1_chr14_+_58711570 AK315158 BC029402 BC005265	-36877	+	TSC_hg19_v1_chr14_+_58711551 NM_002788 NM_152132	-36946	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	16382	-	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	16790	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	16867	+	BC038990|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##D00762|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ892645|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ895883|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT006711|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT019715|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##CR456933|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK315158|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC029402|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC005265|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_002788|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_152132|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)	0.999287	0.0	denovo_WM_7:8:0.239	denovo_WM_7:9:0.239	denovo_WM_7:10:0.239	denovo_WM_7:11:0.239
chr14	61371631	61371789	reg1002509.p1	9.489	+	TSC_hg19_v1_chr14_+_61201489 NM_001177963 NM_002431 BC000820 AK308701 U61835 X87843 X92669 AB463879 CU674412 CR450336	-170195	+	TSC_hg19_v1_chr14_-_61191035 AK309358	-180653	-	AF032107 TSC_hg19_v1_chr14_-_61190584 BC098135 BC098282 BC099722 BC101934 EU446619 EU446844 NM_017420	-181056	-	BC136606 BC136607 AK293158 BC108284 NM_020810	76036	-	NM_001172702 NM_153811 AF543422 TSC_hg19_v1_chr14_+_61447920	76167	+	TSC_hg19_v1_chr14_+_61447932 BC050349	76226	+	NM_001177963|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##NM_002431|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##BC000820|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##AK308701|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##U61835|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##X87843|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##X92669|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##CR450336|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##AK309358|SIX4|51804|SIX homeobox 4##AF032107|SIX4|51804|SIX homeobox 4##BC098135|SIX4|51804|SIX homeobox 4##BC098282|SIX4|51804|SIX homeobox 4##BC099722|SIX4|51804|SIX homeobox 4##BC101934|SIX4|51804|SIX homeobox 4##EU446619|SIX4|51804|SIX homeobox 4##EU446844|SIX4|51804|SIX homeobox 4##NM_017420|SIX4|51804|SIX homeobox 4##BC136606|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##BC136607|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##AK293158|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##BC108284|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##NM_020810|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##NM_001172702|SLC38A6|145389|solute carrier family 38, member 6##NM_153811|SLC38A6|145389|solute carrier family 38, member 6##AF543422|SLC38A6|145389|solute carrier family 38, member 6##BC050349|SLC38A6|145389|solute carrier family 38, member 6	0.997103	0.0	denovo_WM_7:-5:0.313	denovo_WM_7:-6:0.313	denovo_WM_7:-7:0.313
chr1	224192370	224192477	reg1001696.p2	9.488	+	NM_001031685 NM_005426 TSC_hg19_v1_chr1_-_224033682	-158729	-	TSC_hg19_v1_chr1_-_224033620 BC046150 AJ318888 U58334 BC058918	-158800	-	AB384887 TSC_hg19_v1_chr1_-_224033497 AK294432	-158960	-	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	109387	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	178499	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	178564	+	NM_001031685|TP53BP2|7159|tumor protein p53 binding protein, 2##NM_005426|TP53BP2|7159|tumor protein p53 binding protein, 2##BC046150|TP53BP2|7159|tumor protein p53 binding protein, 2##AJ318888|TP53BP2|7159|tumor protein p53 binding protein, 2##U58334|TP53BP2|7159|tumor protein p53 binding protein, 2##BC058918|TP53BP2|7159|tumor protein p53 binding protein, 2##AK294432|TP53BP2|7159|tumor protein p53 binding protein, 2##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1	0.968578	0.046519	denovo_WM_7:-46:0.337
chr10	43905381	43905553	reg1002330.p1	9.486	+	TSC_hg19_v1_chr10_-_43904631 BC015580 BC004254 AK296696 NM_004966 NM_001098204	-821	-	TSC_hg19_v1_chr10_-_43904306 AK001364 NM_001098205	-1149	-	TSC_hg19_v1_chr10_-_43903224 BC016736 NM_001098206	-2208	-	AK302442 TSC_hg19_v1_chr10_+_43932667	27153	+	NM_005674 X82125	158439	-	BC026030 X82128 AK292013 NM_001099282 NM_001099283 NM_001099284	164569	-	BC015580|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC004254|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK296696|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_004966|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098204|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK001364|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098205|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC016736|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098206|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK302442|ZNF487P|642819|zinc finger protein 487, pseudogene##NM_005674|ZNF239|8187|zinc finger protein 239##X82125|ZNF239|8187|zinc finger protein 239##BC026030|ZNF239|8187|zinc finger protein 239##X82128|ZNF239|8187|zinc finger protein 239##AK292013|ZNF239|8187|zinc finger protein 239##NM_001099282|ZNF239|8187|zinc finger protein 239##NM_001099283|ZNF239|8187|zinc finger protein 239##NM_001099284|ZNF239|8187|zinc finger protein 239	0.988312	0.0	denovo_WM_7:-7:0.424	denovo_WM_7:-8:0.424
chr16	85148960	85149100	reg1001984.p2	9.486	+	BC093665 BC111944 AK126284 NM_198491	-2976	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-87660	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-103901	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	495991	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	497923	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	573512	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.954513	0.022502	denovo_WM_7:4:0.858
chr1	11875112	11875234	reg1001741.p1	9.485	+	TSC_hg19_v1_chr1_+_11866302 BC050457 HQ258635 X96391 X99473 X99474 X99475	-8848	+	TSC_hg19_v1_chr1_+_11866297 AK289999 D28475 X83378 BC117420 BC117424 BC143844 AK294764 AK307098	-8903	+	NM_001286 NM_021735 NM_021736 NM_021737 TSC_hg19_v1_chr1_+_11866223	-8954	+	AB528342 DQ893115 DQ896389 EU176780 M30262 TSC_hg19_v1_chr1_-_11907841 BC005893 NM_006172	32618	-	CR541976 CR542003 BC025785 M25296 NM_002521	43767	-	TSC_hg19_v1_chr1_-_11986485 BC035033 AB095933 NM_138346	111300	-	BC050457|CLCN6|1185|chloride channel 6##HQ258635|CLCN6|1185|chloride channel 6##X96391|CLCN6|1185|chloride channel 6##X99473|CLCN6|1185|chloride channel 6##X99474|CLCN6|1185|chloride channel 6##X99475|CLCN6|1185|chloride channel 6##AK289999|CLCN6|1185|chloride channel 6##D28475|CLCN6|1185|chloride channel 6##X83378|CLCN6|1185|chloride channel 6##BC117420|CLCN6|1185|chloride channel 6##BC117424|CLCN6|1185|chloride channel 6##BC143844|CLCN6|1185|chloride channel 6##AK294764|CLCN6|1185|chloride channel 6##AK307098|CLCN6|1185|chloride channel 6##NM_001286|CLCN6|1185|chloride channel 6##NM_021735|CLCN6|1185|chloride channel 6##NM_021736|CLCN6|1185|chloride channel 6##NM_021737|CLCN6|1185|chloride channel 6##DQ893115|NPPA|4878|natriuretic peptide A##DQ896389|NPPA|4878|natriuretic peptide A##EU176780|NPPA|4878|natriuretic peptide A##M30262|NPPA|4878|natriuretic peptide A##BC005893|NPPA|4878|natriuretic peptide A##NM_006172|NPPA|4878|natriuretic peptide A##CR541976|NPPB|4879|natriuretic peptide B##CR542003|NPPB|4879|natriuretic peptide B##BC025785|NPPB|4879|natriuretic peptide B##M25296|NPPB|4879|natriuretic peptide B##NM_002521|NPPB|4879|natriuretic peptide B##BC035033|KIAA2013|90231|KIAA2013##AB095933|KIAA2013|90231|KIAA2013##NM_138346|KIAA2013|90231|KIAA2013	0.999132	0.0	denovo_WM_7:-72:0.239	denovo_WM_7:-73:0.239	denovo_WM_7:-74:0.239	denovo_WM_7:-75:0.239
chr12	111043703	111043883	reg1000238.p2	9.485	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-22667	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-22723	-	TSC_hg19_v1_chr12_-_111020755 AY357944	-23000	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	8132	+	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	83165	-	AK293543 NM_001040107	83806	-	AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1	1.024372	0.0	denovo_WM_7:92:0.447	denovo_WM_7:93:0.447
chr1	28499311	28499460	reg1001411.p1	9.485	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-84261	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-212867	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-237824	+	NM_000952 NM_001164723	4069	-	S52624 AK292053 NM_001164721 NM_001164722	21027	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	60146	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.58931	0.0	denovo_WM_7:19:0.570
chr19	38734555	38734702	reg1002636.p1	9.485	+	TSC_hg19_v1_chr19_-_38720336 AK297581	-14294	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	-14312	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	-19793	-	CU676810 DQ892130 DQ895324 BC021089 TSC_hg19_v1_chr19_-_38747015 AF123763 AY050670	12368	-	AB056508 AB056509 NM_001243947 NM_033256	12572	-	NM_001166103 NM_021102 BC001668 TSC_hg19_v1_chr19_+_38755212 AX772830 AB006534 BC012868	20532	+	AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##DQ892130|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##DQ895324|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##BC021089|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##AF123763|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##AY050670|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##AB056508|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##AB056509|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##NM_001243947|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##NM_033256|PPP1R14A|94274|protein phosphatase 1, regulatory (inhibitor) subunit 14A##NM_001166103|SPINT2|10653|serine peptidase inhibitor, Kunitz type, 2##NM_021102|SPINT2|10653|serine peptidase inhibitor, Kunitz type, 2##BC001668|SPINT2|10653|serine peptidase inhibitor, Kunitz type, 2##AX772830|SPINT2|10653|serine peptidase inhibitor, Kunitz type, 2##AB006534|SPINT2|10653|serine peptidase inhibitor, Kunitz type, 2##BC012868|SPINT2|10653|serine peptidase inhibitor, Kunitz type, 2	1.300206	0.979272	CTCF.p2:7:0.979	denovo_WM_7:-44:0.765
chr3	15170016	15170151	reg1003273.p1	9.484	+	TSC_hg19_v1_chr3_-_15140655 AK291288 AK301735 AL833545 NM_022340	-29430	-	TSC_hg19_v1_chr3_-_15140649 BC032628	-29434	-	AB209673 TSC_hg19_v1_chr3_-_15140645	-29449	-	TSC_hg19_v1_chr3_+_15247736 NM_014296	77651	+	TSC_hg19_v1_chr3_+_15247768 AB028639 BC056202 AK314253 CU691130	77871	+	BC023195 DQ892875 EU176725 AB005047 AB590534 TSC_hg19_v1_chr3_-_15374053 BC010123	203858	-	AK291288|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AK301735|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AL833545|ZFYVE20|64145|zinc finger, FYVE domain containing 20##NM_022340|ZFYVE20|64145|zinc finger, FYVE domain containing 20##BC032628|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AB209673|ZFYVE20|64145|zinc finger, FYVE domain containing 20##NM_014296|CAPN7|23473|calpain 7##AB028639|CAPN7|23473|calpain 7##BC056202|CAPN7|23473|calpain 7##AK314253|CAPN7|23473|calpain 7##BC023195|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##DQ892875|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##EU176725|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AB005047|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC010123|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)	1.55574	0.0	denovo_WM_7:-37:0.304	denovo_WM_7:-42:0.206	denovo_WM_7:-52:0.318
chr14	103889483	103889616	reg1002827.p1	9.481	+	TSC_hg19_v1_chr14_+_103851775 AF465413 BC024773 U64205	-37663	+	TSC_hg19_v1_chr14_+_103851772 BX161395	-37779	+	TSC_hg19_v1_chr14_+_103851700 NM_001128918 NM_001128919 NM_001128920 NM_001128921 NM_002376	-37846	+	CR542268 CU676412 M16364 TSC_hg19_v1_chr14_-_103988931	99331	-	M16451 L47647 TSC_hg19_v1_chr14_-_103989168 BC004914 BC019259 BC008323 BC001190 BC019281 BC010002 AK290101 AK312282 AK298198	99594	-	NM_001823 TSC_hg19_v1_chr14_-_103989206	99653	-	AF465413|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BC024773|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##U64205|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BX161395|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##CR542268|CKB|1152|creatine kinase, brain##M16364|CKB|1152|creatine kinase, brain##M16451|CKB|1152|creatine kinase, brain##L47647|CKB|1152|creatine kinase, brain##BC004914|CKB|1152|creatine kinase, brain##BC019259|CKB|1152|creatine kinase, brain##BC008323|CKB|1152|creatine kinase, brain##BC001190|CKB|1152|creatine kinase, brain##BC019281|CKB|1152|creatine kinase, brain##BC010002|CKB|1152|creatine kinase, brain##AK290101|CKB|1152|creatine kinase, brain##AK312282|CKB|1152|creatine kinase, brain##AK298198|CKB|1152|creatine kinase, brain##NM_001823|CKB|1152|creatine kinase, brain	0.999096	0.0	denovo_WM_7:-5:0.828
chr4	91764286	91764438	reg1002380.p1	9.481	+	BC051694 NM_207491	-608181	+	AK097436 NM_001145065 AK310825 AB051467 BC021681	-715644	+	AK125557 AK313566 BC063848 NM_007351 U27109 AB385146 HQ258009	-948300	+	AB209318 NM_001510 AK308611	1461230	+	BC113623 BC113625 BC069145 AB464463 BC069594 BC069604 CU686920 EU446465 HQ258191 NM_005172 BC069578	2985699	+	TSC_hg19_v1_chr4_+_95128758 NM_001128430 AK027490 BC017953 AB032948	3364449	+	BC051694|FAM190A|401145|family with sequence similarity 190, member A##NM_207491|FAM190A|401145|family with sequence similarity 190, member A##AK097436|FAM190A|401145|family with sequence similarity 190, member A##NM_001145065|FAM190A|401145|family with sequence similarity 190, member A##AK310825|FAM190A|401145|family with sequence similarity 190, member A##AB051467|FAM190A|401145|family with sequence similarity 190, member A##BC021681|FAM190A|401145|family with sequence similarity 190, member A##AK125557|MMRN1|22915|multimerin 1##AK313566|MMRN1|22915|multimerin 1##BC063848|MMRN1|22915|multimerin 1##NM_007351|MMRN1|22915|multimerin 1##U27109|MMRN1|22915|multimerin 1##HQ258009|MMRN1|22915|multimerin 1##AB209318|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001510|GRID2|2895|glutamate receptor, ionotropic, delta 2##AK308611|GRID2|2895|glutamate receptor, ionotropic, delta 2##BC113623|ATOH1|474|atonal homolog 1 (Drosophila)##BC113625|ATOH1|474|atonal homolog 1 (Drosophila)##BC069145|ATOH1|474|atonal homolog 1 (Drosophila)##BC069594|ATOH1|474|atonal homolog 1 (Drosophila)##BC069604|ATOH1|474|atonal homolog 1 (Drosophila)##EU446465|ATOH1|474|atonal homolog 1 (Drosophila)##HQ258191|ATOH1|474|atonal homolog 1 (Drosophila)##NM_005172|ATOH1|474|atonal homolog 1 (Drosophila)##BC069578|ATOH1|474|atonal homolog 1 (Drosophila)##NM_001128430|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AK027490|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC017953|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AB032948|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	0.0	0.0	
chr2	63815913	63816077	reg1002447.p2	9.479	+	TSC_hg19_v1_chr2_-_63815908 NM_015910	-148	-	NM_005917	-253	+	TSC_hg19_v1_chr2_-_63815583 BX538331 AK055030 AL833623	-378	-	TSC_hg19_v1_chr2_+_63816101 AK312331 BC001484 D55654 AK307273	118	+	TSC_hg19_v1_chr2_+_63816146 NM_001199111 NM_001199112 AK295931 AK300719	305	+	TSC_hg19_v1_chr2_+_64068125 NM_001001521 BC002954 U27460	252208	+	NM_015910|WDPCP|51057|WD repeat containing planar cell polarity effector##NM_005917|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##BX538331|WDPCP|51057|WD repeat containing planar cell polarity effector##AK055030|WDPCP|51057|WD repeat containing planar cell polarity effector##AL833623|WDPCP|51057|WD repeat containing planar cell polarity effector##AK312331|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##BC001484|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##D55654|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK307273|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##NM_001199111|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##NM_001199112|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK295931|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK300719|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##NM_001001521|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC002954|UGP2|7360|UDP-glucose pyrophosphorylase 2##U27460|UGP2|7360|UDP-glucose pyrophosphorylase 2	0.0	0.0	
chr12	112986115	112986256	reg1003256.p1	9.478	+	S39383 TSC_hg19_v1_chr12_+_112924353	-61866	+	EU779706 TSC_hg19_v1_chr12_+_112891140	-95116	+	TSC_hg19_v1_chr12_+_112856757 AK289854 D13540 L07527 X70766 L03535 AB384730	-129350	+	NM_001143854 NM_014954	243363	+	AK316112 TSC_hg19_v1_chr12_+_113229745 BC017259	243544	+	NM_001032409 NM_002534 NM_016816 TSC_hg19_v1_chr12_+_113344763 X04371 BC000562 AK291003 BC071981 AK225384 D00068	358582	+	S39383|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##EU779706|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##AK289854|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##D13540|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##L07527|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##X70766|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##L03535|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##NM_001143854|RPH3A|22895|rabphilin 3A homolog (mouse)##NM_014954|RPH3A|22895|rabphilin 3A homolog (mouse)##AK316112|RPH3A|22895|rabphilin 3A homolog (mouse)##BC017259|RPH3A|22895|rabphilin 3A homolog (mouse)##NM_001032409|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##NM_002534|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##NM_016816|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##X04371|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##BC000562|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK291003|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##BC071981|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK225384|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##D00068|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa	0.996482	0.0	
chr17	40608915	40609063	reg1002645.p1	9.478	+	AB464659 TSC_hg19_v1_chr17_-_40575275 BC008849 AK298072 AK074512 AK092406 AK298563 AK314389 AX747528 BC066123 NM_012232	-33762	-	TSC_hg19_v1_chr17_-_40540580 AK291933	-68397	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	-68457	-	TSC_hg19_v1_chr17_+_40610864 L78933 NM_001130020 NM_001130021 NM_005177 Z71460	1874	+	BC017826 TSC_hg19_v1_chr17_+_40610895 AK223554 AK299784	1896	+	AK316305 TSC_hg19_v1_chr17_+_40610897	1908	+	BC008849|PTRF|284119|polymerase I and transcript release factor##AK298072|PTRF|284119|polymerase I and transcript release factor##AK074512|PTRF|284119|polymerase I and transcript release factor##AK092406|PTRF|284119|polymerase I and transcript release factor##AK298563|PTRF|284119|polymerase I and transcript release factor##AK314389|PTRF|284119|polymerase I and transcript release factor##BC066123|PTRF|284119|polymerase I and transcript release factor##NM_012232|PTRF|284119|polymerase I and transcript release factor##AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L78933|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_001130020|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_001130021|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##NM_005177|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##Z71460|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##BC017826|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK223554|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK299784|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1##AK316305|ATP6V0A1|535|ATPase, H+ transporting, lysosomal V0 subunit a1	0.0	0.0	
chr9	90175471	90175627	reg1002698.p2	9.478	+	TSC_hg19_v1_chr9_+_90112781 NM_004938 X76104 BC003614 AK295119	-62681	+	TSC_hg19_v1_chr9_+_90112648 AK296839 AB208871	-62963	+	AK127445 NM_001001709 BC132741 BC136791 HQ258059	-411948	+	NM_001912 NM_145918 TSC_hg19_v1_chr9_+_90341001	165444	+	AK075100 TSC_hg19_v1_chr9_+_90341022 BX648848	165473	+	AL832167 BX647102 BX647434 TSC_hg19_v1_chr9_+_90341033 BX537395 BX647101 BX647413 BX647435 BX648849 BX649140 X12451 AF304301 BC142983 AF217997	165491	+	NM_004938|DAPK1|1612|death-associated protein kinase 1##X76104|DAPK1|1612|death-associated protein kinase 1##AK295119|DAPK1|1612|death-associated protein kinase 1##AK296839|DAPK1|1612|death-associated protein kinase 1##AB208871|DAPK1|1612|death-associated protein kinase 1##AK127445|C9orf170|401535|chromosome 9 open reading frame 170##NM_001001709|C9orf170|401535|chromosome 9 open reading frame 170##BC132741|C9orf170|401535|chromosome 9 open reading frame 170##BC136791|C9orf170|401535|chromosome 9 open reading frame 170##HQ258059|C9orf170|401535|chromosome 9 open reading frame 170##NM_001912|CTSL1|1514|cathepsin L1##NM_145918|CTSL1|1514|cathepsin L1##AK075100|CTSL1|1514|cathepsin L1##BX648848|CTSL1|1514|cathepsin L1##AL832167|CTSL1|1514|cathepsin L1##BX647102|CTSL1|1514|cathepsin L1##BX647434|CTSL1|1514|cathepsin L1##BX537395|CTSL1|1514|cathepsin L1##BX647101|CTSL1|1514|cathepsin L1##BX647413|CTSL1|1514|cathepsin L1##BX647435|CTSL1|1514|cathepsin L1##BX648849|CTSL1|1514|cathepsin L1##BX649140|CTSL1|1514|cathepsin L1##X12451|CTSL1|1514|cathepsin L1##AF304301|CTSL1|1514|cathepsin L1##BC142983|CTSL1|1514|cathepsin L1##AF217997|CTSL1|1514|cathepsin L1	0.999132	0.0	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239	denovo_WM_7:43:0.239	denovo_WM_7:44:0.239
chr20	61641981	61642101	reg1001925.p2	9.476	+	BC137288 BC137308 NM_080606	-3655	-	TSC_hg19_v1_chr20_+_61584095 AK095473 BC038593	-57916	+	NM_022082 TSC_hg19_v1_chr20_+_61584053 AK125597 BC025312 AK074107	-58011	+	TSC_hg19_v1_chr20_-_61847469 BC050284 NM_017798	205482	-	AY358835 AY358836 AF311388 NM_022161 NM_139317 BC014475 DQ893077 DQ896338 AF301009 AY517497	225300	+	TSC_hg19_v1_chr20_-_61884664 AK308958	242692	-	BC137288|BHLHE23|128408|basic helix-loop-helix family, member e23##BC137308|BHLHE23|128408|basic helix-loop-helix family, member e23##NM_080606|BHLHE23|128408|basic helix-loop-helix family, member e23##AK095473|SLC17A9|63910|solute carrier family 17, member 9##BC038593|SLC17A9|63910|solute carrier family 17, member 9##NM_022082|SLC17A9|63910|solute carrier family 17, member 9##AK125597|SLC17A9|63910|solute carrier family 17, member 9##BC025312|SLC17A9|63910|solute carrier family 17, member 9##AK074107|SLC17A9|63910|solute carrier family 17, member 9##BC050284|YTHDF1|54915|YTH domain family, member 1##NM_017798|YTHDF1|54915|YTH domain family, member 1##AY358835|BIRC7|79444|baculoviral IAP repeat containing 7##AY358836|BIRC7|79444|baculoviral IAP repeat containing 7##AF311388|BIRC7|79444|baculoviral IAP repeat containing 7##NM_022161|BIRC7|79444|baculoviral IAP repeat containing 7##NM_139317|BIRC7|79444|baculoviral IAP repeat containing 7##BC014475|BIRC7|79444|baculoviral IAP repeat containing 7##DQ893077|BIRC7|79444|baculoviral IAP repeat containing 7##DQ896338|BIRC7|79444|baculoviral IAP repeat containing 7##AF301009|BIRC7|79444|baculoviral IAP repeat containing 7##AY517497|BIRC7|79444|baculoviral IAP repeat containing 7##AK308958|NKAIN4|128414|Na+/K+ transporting ATPase interacting 4	1.975845	0.0	denovo_WM_7:58:0.370	denovo_WM_7:61:0.334	denovo_WM_7:76:0.240	denovo_WM_7:77:0.241	denovo_WM_7:78:0.254
chr6	91092982	91093137	reg1002000.p1	9.476	+	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-86447	-	AJ271878 TSC_hg19_v1_chr6_-_91006556 NM_021813	-86548	-	AB527151 AF296766 NM_032602	-488873	+	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	203624	-	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	203779	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	3036124	-	AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AJ271878|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_021813|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7	1.995834	0.0	denovo_WM_7:-6:0.268	denovo_WM_7:-7:0.352	denovo_WM_7:9:0.270	denovo_WM_7:10:0.354
chr12	99006794	99006969	reg1002841.p2	9.474	+	TSC_hg19_v1_chr12_+_98987680 AB590124 CU674494 DQ890958 EU176545 BC015379	-19166	+	BC014019 TSC_hg19_v1_chr12_+_98987520	-19338	+	TSC_hg19_v1_chr12_+_98987497 BC001328 BC068067 BC006455 BC011641 X60036 BC051367 AB064666 BC004345 BC011574 BC000998 BC003504	-19398	+	TSC_hg19_v1_chr12_-_99038567 CU691338 BC058933 AK055613 BC107572 BC051372 AJ539425 AJ539426 AJ539427 BC029415 NM_153687 NM_201612 NM_201613	31627	-	TSC_hg19_v1_chr12_-_99038755 AK123069	31924	-	AK307509 TSC_hg19_v1_chr12_+_99039067 AF013263 NM_001160 NM_013229 NM_181861 NM_181868 NM_181869	32116	+	DQ890958|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##EU176545|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC015379|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC014019|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC001328|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC068067|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC006455|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC011641|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##X60036|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC051367|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##AB064666|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC004345|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC011574|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC000998|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC003504|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC058933|IKBIP|121457|IKBKB interacting protein##AK055613|IKBIP|121457|IKBKB interacting protein##BC107572|IKBIP|121457|IKBKB interacting protein##BC051372|IKBIP|121457|IKBKB interacting protein##AJ539425|IKBIP|121457|IKBKB interacting protein##AJ539426|IKBIP|121457|IKBKB interacting protein##AJ539427|IKBIP|121457|IKBKB interacting protein##BC029415|IKBIP|121457|IKBKB interacting protein##NM_153687|IKBIP|121457|IKBKB interacting protein##NM_201612|IKBIP|121457|IKBKB interacting protein##NM_201613|IKBIP|121457|IKBKB interacting protein##AK123069|IKBIP|121457|IKBKB interacting protein##AK307509|APAF1|317|apoptotic peptidase activating factor 1##AF013263|APAF1|317|apoptotic peptidase activating factor 1##NM_001160|APAF1|317|apoptotic peptidase activating factor 1##NM_013229|APAF1|317|apoptotic peptidase activating factor 1##NM_181861|APAF1|317|apoptotic peptidase activating factor 1##NM_181868|APAF1|317|apoptotic peptidase activating factor 1##NM_181869|APAF1|317|apoptotic peptidase activating factor 1	0.737418	0.0	denovo_WM_7:-4:0.492
chr1	9031277	9031392	reg1002246.p1	9.473	+	NM_001215 AK300652 BC034350 M57892 AB102863 AB103091	-25401	+	AK309177 NM_001428	-92184	-	TSC_hg19_v1_chr1_-_8938746 AK223192 BX537400 AK309291 AK315417	-92572	-	AB527336 AY571960 NM_207420	55069	-	TSC_hg19_v1_chr1_-_9117554 AF451839 AF479408	86244	-	TSC_hg19_v1_chr1_-_9129605 DQ892291 DQ895491 CU674838 AK300091	98265	-	NM_001215|CA6|765|carbonic anhydrase VI##AK300652|CA6|765|carbonic anhydrase VI##BC034350|CA6|765|carbonic anhydrase VI##M57892|CA6|765|carbonic anhydrase VI##AB102863|CA6|765|carbonic anhydrase VI##AB103091|CA6|765|carbonic anhydrase VI##AK309177|ENO1|2023|enolase 1, (alpha)##NM_001428|ENO1|2023|enolase 1, (alpha)##AK223192|ENO1|2023|enolase 1, (alpha)##BX537400|ENO1|2023|enolase 1, (alpha)##AK309291|ENO1|2023|enolase 1, (alpha)##AK315417|ENO1|2023|enolase 1, (alpha)##AY571960|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_207420|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##AF451839|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AF479408|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892291|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ895491|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK300091|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5	0.99773	0.0	denovo_WM_7:43:0.238	denovo_WM_7:44:0.238	denovo_WM_7:45:0.238	denovo_WM_7:46:0.238
chr5	132441827	132441937	reg1000980.p2	9.471	+	TSC_hg19_v1_chr5_+_132432890 AK315862	-8991	+	TSC_hg19_v1_chr5_+_132428397 AK315887 AK311316	-13479	+	TSC_hg19_v1_chr5_+_132406081 AK295847 AK311471	-35779	+	TSC_hg19_v1_chr5_-_132948202 AK055684	506317	-	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	506356	-	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	862493	-	AK315862|HSPA4|3308|heat shock 70kDa protein 4##AK315887|HSPA4|3308|heat shock 70kDa protein 4##AK311316|HSPA4|3308|heat shock 70kDa protein 4##AK295847|HSPA4|3308|heat shock 70kDa protein 4##AK311471|HSPA4|3308|heat shock 70kDa protein 4##AK055684|FSTL4|23105|follistatin-like 4##NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15	2.98359	0.0	denovo_WM_7:-56:0.220
chr17	30851353	30851492	reg1001341.p1	9.468	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-36662	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-36825	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-37351	+	CU688936 AB385376 AB018270 BC146763 NM_015194	352473	-	TSC_hg19_v1_chr17_-_31204141 AK127942	352701	-	TSC_hg19_v1_chr17_-_31204196 BC030602	352791	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	0.989551	0.0	denovo_WM_7:-3:0.585	denovo_WM_7:-4:0.312
chr15	93392630	93392776	reg1002548.p1	9.467	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-115314	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-193824	-	AK057393 NM_153040	-377797	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	50783	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	50877	+	AK295909 TSC_hg19_v1_chr15_+_93447798	55057	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	0.99689	0.0	
chr21	34733812	34733949	reg1002054.p2	9.464	+	AK222770 AK222812 AK312631 TSC_hg19_v1_chr21_+_34697277 BC021825 J03171 BC002590 AB528746 CU692410 DQ891323 DQ894507	-36562	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	-36662	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	-95126	+	TSC_hg19_v1_chr21_+_34775192 NM_005534 U05875	41316	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	41852	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	41868	+	AK222770|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK222812|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK312631|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC021825|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##J03171|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC002590|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ891323|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ894507|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_005534|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05875|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)	1.539254	0.087783	denovo_WM_7:79:0.270
chr14	95969861	95969948	reg1001168.p1	9.461	+	AK131436 BC146604 BX248076 NM_152592	-27800	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	-183721	-	TSC_hg19_v1_chr14_+_95624023 BC040596	-345883	+	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	31111	-	TSC_hg19_v1_chr14_+_96001352 NM_016417	31422	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	31464	+	AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)##BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##NM_016417|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5	1.29626	0.0	denovo_WM_7:50:0.239	denovo_WM_7:65:0.237
chr1	154580707	154580831	reg1002510.p1	9.458	+	AK304153 TSC_hg19_v1_chr1_-_154580680 X79449 NM_001111 NM_015840 NM_015841	-69	-	TSC_hg19_v1_chr1_-_154580636 U10439 BC038227	-133	-	EU176459 EU176799 EF190448 EF190449 U18121 TSC_hg19_v1_chr1_-_154580591	-221	-	X98561 TSC_hg19_v1_chr1_-_154600438 AB209891 AF084516 BX640741 BX538232	19645	-	TSC_hg19_v1_chr1_-_154600448 NM_001025107 AK097241	19696	-	CU692066 HQ448417 AF438203 BC042147 NM_170782	251493	-	AK304153|ADAR|103|adenosine deaminase, RNA-specific##X79449|ADAR|103|adenosine deaminase, RNA-specific##NM_001111|ADAR|103|adenosine deaminase, RNA-specific##NM_015840|ADAR|103|adenosine deaminase, RNA-specific##NM_015841|ADAR|103|adenosine deaminase, RNA-specific##U10439|ADAR|103|adenosine deaminase, RNA-specific##BC038227|ADAR|103|adenosine deaminase, RNA-specific##EU176459|ADAR|103|adenosine deaminase, RNA-specific##EU176799|ADAR|103|adenosine deaminase, RNA-specific##EF190448|ADAR|103|adenosine deaminase, RNA-specific##EF190449|ADAR|103|adenosine deaminase, RNA-specific##U18121|ADAR|103|adenosine deaminase, RNA-specific##AB209891|ADAR|103|adenosine deaminase, RNA-specific##AF084516|ADAR|103|adenosine deaminase, RNA-specific##BX640741|ADAR|103|adenosine deaminase, RNA-specific##BX538232|ADAR|103|adenosine deaminase, RNA-specific##NM_001025107|ADAR|103|adenosine deaminase, RNA-specific##AK097241|ADAR|103|adenosine deaminase, RNA-specific##HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	0.998337	0.0	denovo_WM_7:44:0.457	denovo_WM_7:45:0.457
chr21	32770419	32770568	reg1002440.p1	9.457	+	AB096964 NM_001099219	-359699	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-516635	-	AJ457063 AB096962 NM_181606	-568505	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	160865	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	261514	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	303625	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.999625	0.0	
chr2	72431660	72431763	reg1002258.p2	9.455	+	TSC_hg19_v1_chr2_-_72374955 AF252297 AK294814 BC069443 BC109205 FJ467289 NM_019885 CU686818 AK313433	-56769	-	AK295683 TSC_hg19_v1_chr2_-_72371202	-60512	-	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	-737818	+	TSC_hg19_v1_chr2_-_73053163 AB384543 AB023136 NM_015189	621393	-	TSC_hg19_v1_chr2_+_73114529 NM_003124 AK222942 M76231 BC017310 AK291856 DQ891699 DQ894880	682819	+	BC045762 NM_004097 TSC_hg19_v1_chr2_+_73144689	712942	+	AF252297|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK294814|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC069443|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC109205|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##FJ467289|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_019885|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK313433|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AB023136|EXOC6B|23233|exocyst complex component 6B##NM_015189|EXOC6B|23233|exocyst complex component 6B##NM_003124|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK222942|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##M76231|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC017310|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK291856|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ891699|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ894880|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC045762|EMX1|2016|empty spiracles homeobox 1##NM_004097|EMX1|2016|empty spiracles homeobox 1	0.989286	0.0	denovo_WM_7:-23:0.944
chr10	6104312	6104480	reg1002323.p1	9.454	+	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	-174	-	AF035279 BC107777 BC065506 NM_001243539	-84382	-	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	-84883	-	TSC_hg19_v1_chr10_+_6130954 NM_032905	26553	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	26603	+	TSC_hg19_v1_chr10_+_6131035 BC007871 BC039322 NM_001145547	26775	+	AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha##AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##NM_032905|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17##BC007871|RBM17|84991|RNA binding motif protein 17##BC039322|RBM17|84991|RNA binding motif protein 17##NM_001145547|RBM17|84991|RNA binding motif protein 17	0.995715	0.0	
chr10	125974725	125974878	reg1000617.p3	9.452	+	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	-121648	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	-122902	-	BC137492 BC146862 AY358565 NM_198148	-323305	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	132672	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	132717	-	NM_001146340 TSC_hg19_v1_chr10_-_126138606	163776	-	BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##NM_001146340|NKX1-2|390010|NK1 homeobox 2	0.0	0.0	
chr7	87849584	87849764	reg1002402.p2	9.451	+	TSC_hg19_v1_chr7_-_87849391 AK129770 AK310366 NM_003130	-269	-	AB464235 L12387 TSC_hg19_v1_chr7_-_87849352 AK295225 BC011025 M32886	-322	-	TSC_hg19_v1_chr7_+_87563605 BC036029 BC092465 NM_004194 NM_016351 NM_021721 NM_021722 NM_021723 AK291010 BC062433 BC125118 BC125117 AF073291 AF155381 AF155382	-286091	+	TSC_hg19_v1_chr7_-_87856292 AK296601 NM_198901	6620	-	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	86540	-	BC140826 BC140829 AK056672 AY295769 NM_181646	539042	+	AK129770|SRI|6717|sorcin##AK310366|SRI|6717|sorcin##NM_003130|SRI|6717|sorcin##L12387|SRI|6717|sorcin##AK295225|SRI|6717|sorcin##BC011025|SRI|6717|sorcin##M32886|SRI|6717|sorcin##BC036029|ADAM22|53616|ADAM metallopeptidase domain 22##BC092465|ADAM22|53616|ADAM metallopeptidase domain 22##NM_004194|ADAM22|53616|ADAM metallopeptidase domain 22##NM_016351|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021721|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021722|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021723|ADAM22|53616|ADAM metallopeptidase domain 22##AK291010|ADAM22|53616|ADAM metallopeptidase domain 22##BC062433|ADAM22|53616|ADAM metallopeptidase domain 22##BC125118|ADAM22|53616|ADAM metallopeptidase domain 22##BC125117|ADAM22|53616|ADAM metallopeptidase domain 22##AF073291|ADAM22|53616|ADAM metallopeptidase domain 22##AF155381|ADAM22|53616|ADAM metallopeptidase domain 22##AF155382|ADAM22|53616|ADAM metallopeptidase domain 22##AK296601|SRI|6717|sorcin##NM_198901|SRI|6717|sorcin##BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B	0.996152	0.0	denovo_WM_7:6:0.770
chr18	60683659	60683808	reg1002716.p1	9.449	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-299425	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-299807	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	-301069	+	TSC_hg19_v1_chr18_-_60795898 AF401211	112202	-	BC027258 NM_000633 NM_000657	302827	-	TSC_hg19_v1_chr18_-_60986977 X06487	303260	-	BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2	0.999143	0.947539	denovo_WM_7:36:0.739	CTCF.p2:-57:0.948
chr17	618458	618621	reg1002601.p2	9.448	+	CU675257 EU021218 EU434648 EU434649 EU434650 AF246287 AY444797 BC006116 TSC_hg19_v1_chr17_-_618080 BC040223 AF318335 AK290343 AK092532 AX747587 NM_001128159 NM_018289	-500	-	TSC_hg19_v1_chr17_+_260159 AK128660 NM_001013672 BC141806 BC057385 BC070116 CU687042	-358359	+	TSC_hg19_v1_chr17_-_202619 NM_001190411 NM_001190412 NM_001190413 NM_006987	-415915	-	TSC_hg19_v1_chr17_+_635806 AF477201 BC026023 AK025935 AK292065 NM_024792 CU693104 AK125146	17247	+	TSC_hg19_v1_chr17_-_655412 AB463052 AF173856 BC036024 AK302722 BC032084 BC020062	36881	-	TSC_hg19_v1_chr17_-_655502 NM_015721	36946	-	EU021218|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434648|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434649|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434650|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF246287|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AY444797|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##BC006116|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##BC040223|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF318335|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK290343|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK092532|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##NM_001128159|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##NM_018289|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK128660|C17orf97|400566|chromosome 17 open reading frame 97##NM_001013672|C17orf97|400566|chromosome 17 open reading frame 97##BC141806|C17orf97|400566|chromosome 17 open reading frame 97##BC057385|C17orf97|400566|chromosome 17 open reading frame 97##BC070116|C17orf97|400566|chromosome 17 open reading frame 97##NM_001190411|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_001190412|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_001190413|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_006987|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##AF477201|FAM57A|79850|family with sequence similarity 57, member A##BC026023|FAM57A|79850|family with sequence similarity 57, member A##AK025935|FAM57A|79850|family with sequence similarity 57, member A##AK292065|FAM57A|79850|family with sequence similarity 57, member A##NM_024792|FAM57A|79850|family with sequence similarity 57, member A##AK125146|FAM57A|79850|family with sequence similarity 57, member A##AF173856|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC036024|GEMIN4|50628|gem (nuclear organelle) associated protein 4##AK302722|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC032084|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC020062|GEMIN4|50628|gem (nuclear organelle) associated protein 4##NM_015721|GEMIN4|50628|gem (nuclear organelle) associated protein 4	0.996181	0.0	
chr7	37940946	37941089	reg1003126.p1	9.448	+	BC036816 NM_016616	-52819	+	AB529245 AY288420 BC120951 BC120952 NM_181791	-161022	+	BC043356 TSC_hg19_v1_chr7_+_37723380	-217635	+	AF026692 BC047684 BC058911 AK313029 TSC_hg19_v1_chr7_-_37956420 AK303977 AK302357	15394	-	TSC_hg19_v1_chr7_-_37956526 BC032828 NM_003014	15503	-	AY027862 NM_001242946 NM_017549 TSC_hg19_v1_chr7_+_37960259 BC018299	19206	+	BC036816|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##NM_016616|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##AY288420|GPR141|353345|G protein-coupled receptor 141##BC120951|GPR141|353345|G protein-coupled receptor 141##BC120952|GPR141|353345|G protein-coupled receptor 141##NM_181791|GPR141|353345|G protein-coupled receptor 141##AF026692|SFRP4|6424|secreted frizzled-related protein 4##BC047684|SFRP4|6424|secreted frizzled-related protein 4##BC058911|SFRP4|6424|secreted frizzled-related protein 4##AK313029|SFRP4|6424|secreted frizzled-related protein 4##AK303977|SFRP4|6424|secreted frizzled-related protein 4##AK302357|SFRP4|6424|secreted frizzled-related protein 4##BC032828|SFRP4|6424|secreted frizzled-related protein 4##NM_003014|SFRP4|6424|secreted frizzled-related protein 4##AY027862|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_001242946|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_017549|EPDR1|54749|ependymin related protein 1 (zebrafish)##BC018299|EPDR1|54749|ependymin related protein 1 (zebrafish)	0.999659	0.891667	CTCF.p2:18:0.892	denovo_WM_7:-22:0.851
chr12	93381980	93382091	reg1002276.p3	9.445	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-58937	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-58992	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	-59097	-	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	389857	+	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	453651	-	TSC_hg19_v1_chr12_-_93835718 D83004	453683	-	NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.0	0.0	
chr6	37485352	37485486	reg1003174.p1	9.445	+	TSC_hg19_v1_chr6_-_37467691 BC104835 AF161383 NM_138493	-17723	-	TSC_hg19_v1_chr6_-_37467667 BC003515 BC108655	-17767	-	AB385274 TSC_hg19_v1_chr6_+_37403469	-81982	+	TSC_hg19_v1_chr6_-_37665660 AF478693 NM_153487	180287	-	TSC_hg19_v1_chr6_+_37787274 NM_021943	301871	+	TSC_hg19_v1_chr6_+_37787655 AK023284 BC031481 DQ891133 DQ894312	302271	+	BC104835|CCDC167|154467|coiled-coil domain containing 167##AF161383|CCDC167|154467|coiled-coil domain containing 167##NM_138493|CCDC167|154467|coiled-coil domain containing 167##BC003515|CCDC167|154467|coiled-coil domain containing 167##BC108655|CCDC167|154467|coiled-coil domain containing 167##AF478693|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_153487|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_021943|ZFAND3|60685|zinc finger, AN1-type domain 3##AK023284|ZFAND3|60685|zinc finger, AN1-type domain 3##BC031481|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ891133|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ894312|ZFAND3|60685|zinc finger, AN1-type domain 3	0.0	0.0	
chr2	111952594	111952742	reg1002436.p1	9.444	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-74181	+	AK300513 NM_001142807 BC022268	-462489	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-516846	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	688958	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	689093	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	703517	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.99809	0.0	denovo_WM_7:34:0.982
chr15	91536265	91536445	reg1002128.p2	9.442	+	BC064606 BC113826 TSC_hg19_v1_chr15_+_91499981	-36380	+	TSC_hg19_v1_chr15_+_91498113 NM_001017919 NM_033544 BC140708 BC140709 BC094739	-38264	+	TSC_hg19_v1_chr15_+_91478539 AK000905 AK293538 BC037992 DQ892953 DQ896200 CU691534	-57801	+	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	1411	-	CU677627 TSC_hg19_v1_chr15_-_91565525	29147	-	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	29415	-	BC064606|RCCD1|91433|RCC1 domain containing 1##BC113826|RCCD1|91433|RCC1 domain containing 1##NM_001017919|RCCD1|91433|RCC1 domain containing 1##NM_033544|RCCD1|91433|RCC1 domain containing 1##BC140708|RCCD1|91433|RCC1 domain containing 1##BC140709|RCCD1|91433|RCC1 domain containing 1##BC094739|RCCD1|91433|RCC1 domain containing 1##AK000905|UNC45A|55898|unc-45 homolog A (C. elegans)##AK293538|UNC45A|55898|unc-45 homolog A (C. elegans)##BC037992|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ892953|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ896200|UNC45A|55898|unc-45 homolog A (C. elegans)##AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)	2.98869	0.0	denovo_WM_7:-30:0.270	denovo_WM_7:-31:0.726	denovo_WM_7:-46:0.859	denovo_WM_7:94:0.457	denovo_WM_7:95:0.457
chr15	98838526	98838634	reg1002627.p1	9.441	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	-334629	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	-334661	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-1511908	+	AK097062 AK097062 NM_182562	219030	-	TSC_hg19_v1_chr15_+_99191767 AB425196	353391	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	354176	+	BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor	2.96763	0.348403	CTCF.p2:13:0.348	denovo_WM_7:39:0.276	denovo_WM_7:40:0.231	denovo_WM_7:58:0.225	denovo_WM_7:59:0.270	denovo_WM_7:104:0.710
chr20	30946021	30946174	reg1002038.p1	9.439	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	-80611	+	TSC_hg19_v1_chr20_+_30795710 CU674282 AL832023	-150366	+	D80002 TSC_hg19_v1_chr20_+_30795698	-150399	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	73	+	TSC_hg19_v1_chr20_+_30946787 AK122923	729	+	AB023195 TSC_hg19_v1_chr20_+_31017235	71114	+	NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##AL832023|POFUT1|23509|protein O-fucosyltransferase 1##D80002|POFUT1|23509|protein O-fucosyltransferase 1##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)##AB023195|ASXL1|171023|additional sex combs like 1 (Drosophila)	0.392203	0.0	
chr7	75407748	75407920	reg1001678.p1	9.439	+	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	-39524	-	AF365404 AB385224 TSC_hg19_v1_chr7_-_75368255 AK094866 AK304738 BC110545	-39594	-	BC101598 BC143635 BC087844 BC022886 BC007683 BC014421 BC029646 TSC_hg19_v1_chr7_-_75157432 BC046153	-250649	-	NM_006072 AY358893	11304	-	AJ223461 BC069072 BC069391 NM_002991 U85768 AB590965 CU686790	35195	-	AF226732 TSC_hg19_v1_chr7_+_75508369 NM_001040456 NM_001040457 BC069017 AK026590	100500	+	AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##AF365404|HIP1|3092|huntingtin interacting protein 1##AK094866|HIP1|3092|huntingtin interacting protein 1##AK304738|HIP1|3092|huntingtin interacting protein 1##BC110545|HIP1|3092|huntingtin interacting protein 1##BC101598|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC143635|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC087844|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC007683|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC014421|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC046153|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26##AJ223461|CCL24|6369|chemokine (C-C motif) ligand 24##BC069072|CCL24|6369|chemokine (C-C motif) ligand 24##BC069391|CCL24|6369|chemokine (C-C motif) ligand 24##NM_002991|CCL24|6369|chemokine (C-C motif) ligand 24##U85768|CCL24|6369|chemokine (C-C motif) ligand 24##AF226732|RHBDD2|57414|rhomboid domain containing 2##NM_001040456|RHBDD2|57414|rhomboid domain containing 2##NM_001040457|RHBDD2|57414|rhomboid domain containing 2##BC069017|RHBDD2|57414|rhomboid domain containing 2##AK026590|RHBDD2|57414|rhomboid domain containing 2	0.99243	0.0	denovo_WM_7:-98:0.496	denovo_WM_7:-99:0.496
chrX	48859023	48859173	reg1002626.p1	9.439	+	TSC_hg19_v1_chrX_-_48858674 AB032993 AB527837 AK292158 BC101544 BC101546 BX647801 BX647804 NM_020137 NM_207672	-450	-	BC045659 NM_004979 TSC_hg19_v1_chrX_-_48828252	-30847	-	TSC_hg19_v1_chrX_-_48815644 NM_001136159	-43454	-	AB527281 EU446500 EU831602 EU831689 AK313540 BC001532 TSC_hg19_v1_chrX_-_48900884	41728	-	TSC_hg19_v1_chrX_-_48900948 AL161985 X96717 BC026027 NM_006521	41862	-	BC008769 NM_001163322 NM_033626 NM_001163321 NM_001163323 AK315837 AK294024 AK300366 AK293898	57435	+	AB032993|GRIPAP1|56850|GRIP1 associated protein 1##AK292158|GRIPAP1|56850|GRIP1 associated protein 1##BC101544|GRIPAP1|56850|GRIP1 associated protein 1##BC101546|GRIPAP1|56850|GRIP1 associated protein 1##BX647801|GRIPAP1|56850|GRIP1 associated protein 1##BX647804|GRIPAP1|56850|GRIP1 associated protein 1##NM_020137|GRIPAP1|56850|GRIP1 associated protein 1##NM_207672|GRIPAP1|56850|GRIP1 associated protein 1##BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_001136159|OTUD5|55593|OTU domain containing 5##EU446500|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831602|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831689|TFE3|7030|transcription factor binding to IGHM enhancer 3##AK313540|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC001532|TFE3|7030|transcription factor binding to IGHM enhancer 3##AL161985|TFE3|7030|transcription factor binding to IGHM enhancer 3##X96717|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC026027|TFE3|7030|transcription factor binding to IGHM enhancer 3##NM_006521|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC008769|CCDC120|90060|coiled-coil domain containing 120##NM_001163322|CCDC120|90060|coiled-coil domain containing 120##NM_033626|CCDC120|90060|coiled-coil domain containing 120##NM_001163321|CCDC120|90060|coiled-coil domain containing 120##NM_001163323|CCDC120|90060|coiled-coil domain containing 120##AK315837|CCDC120|90060|coiled-coil domain containing 120##AK294024|CCDC120|90060|coiled-coil domain containing 120##AK300366|CCDC120|90060|coiled-coil domain containing 120##AK293898|CCDC120|90060|coiled-coil domain containing 120	0.998892	0.0	
chr10	13829828	13829987	reg1001646.p3	9.434	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-80218	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-200920	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-200964	+	TSC_hg19_v1_chr10_-_14050453 AK001072	220585	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	542943	-	TSC_hg19_v1_chr10_-_14646259 BC064407	816410	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.993461	0.082099	denovo_WM_7:-24:0.498
chr22	33869054	33869204	reg1002754.p2	9.432	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-414774	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-466403	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-671377	+	AJ007583 AB011181 NM_004737 NM_133642	447241	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1593020	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1784347	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.996101	0.0	denovo_WM_7:31:0.252	denovo_WM_7:34:0.504
chr1	157203016	157203160	reg1002699.p1	9.431	+	TSC_hg19_v1_chr1_-_157108169 BC022868 NM_005240 AK304789 AK316274 NM_001145312	-94805	-	TSC_hg19_v1_chr1_-_157108158 L16464	-94938	-	AK131392 NM_001004341	-133489	-	AF397453 BC101066 BC101067 BC101068 BC101069 AF343662 AF343663 AF343664 AF343665 AK301356 AL834187 AY358085 AK311561 AK300010 AF369794 NM_001195388 NM_031281	319142	-	AF329490 AF397452 BC143628 BC125173 BC125174 AF343659 AF343660 AF343661 NM_031282	364713	-	DQ892459 DQ895672 AY043466 AF416901 AF416902 AF416903 AF416904 AF416905 BC028933 BC013698 AK301257 AF459027 NM_052939 AK098122	467439	-	BC022868|ETV3|2117|ets variant 3##NM_005240|ETV3|2117|ets variant 3##AK304789|ETV3|2117|ets variant 3##AK316274|ETV3|2117|ets variant 3##NM_001145312|ETV3|2117|ets variant 3##L16464|ETV3|2117|ets variant 3##AK131392|ETV3L|440695|ets variant 3-like##NM_001004341|ETV3L|440695|ets variant 3-like##AF397453|FCRL5|83416|Fc receptor-like 5##BC101066|FCRL5|83416|Fc receptor-like 5##BC101067|FCRL5|83416|Fc receptor-like 5##BC101068|FCRL5|83416|Fc receptor-like 5##BC101069|FCRL5|83416|Fc receptor-like 5##AF343662|FCRL5|83416|Fc receptor-like 5##AF343663|FCRL5|83416|Fc receptor-like 5##AF343664|FCRL5|83416|Fc receptor-like 5##AF343665|FCRL5|83416|Fc receptor-like 5##AK301356|FCRL5|83416|Fc receptor-like 5##AL834187|FCRL5|83416|Fc receptor-like 5##AY358085|FCRL5|83416|Fc receptor-like 5##AK300010|FCRL5|83416|Fc receptor-like 5##AF369794|FCRL5|83416|Fc receptor-like 5##NM_001195388|FCRL5|83416|Fc receptor-like 5##NM_031281|FCRL5|83416|Fc receptor-like 5##AF329490|FCRL4|83417|Fc receptor-like 4##AF397452|FCRL4|83417|Fc receptor-like 4##BC143628|FCRL4|83417|Fc receptor-like 4##BC125173|FCRL4|83417|Fc receptor-like 4##BC125174|FCRL4|83417|Fc receptor-like 4##AF343659|FCRL4|83417|Fc receptor-like 4##AF343660|FCRL4|83417|Fc receptor-like 4##AF343661|FCRL4|83417|Fc receptor-like 4##NM_031282|FCRL4|83417|Fc receptor-like 4##DQ892459|FCRL3|115352|Fc receptor-like 3##DQ895672|FCRL3|115352|Fc receptor-like 3##AY043466|FCRL3|115352|Fc receptor-like 3##AF416901|FCRL3|115352|Fc receptor-like 3##AF416902|FCRL3|115352|Fc receptor-like 3##AF416903|FCRL3|115352|Fc receptor-like 3##AF416904|FCRL3|115352|Fc receptor-like 3##AF416905|FCRL3|115352|Fc receptor-like 3##BC028933|FCRL3|115352|Fc receptor-like 3##BC013698|FCRL3|115352|Fc receptor-like 3##AK301257|FCRL3|115352|Fc receptor-like 3##AF459027|FCRL3|115352|Fc receptor-like 3##NM_052939|FCRL3|115352|Fc receptor-like 3##AK098122|FCRL3|115352|Fc receptor-like 3	1.854	0.0	denovo_WM_7:-20:0.852	denovo_WM_7:-35:0.777
chr11	75228473	75228620	reg1002603.p2	9.431	+	TSC_hg19_v1_chr11_-_75141540 NM_001039548	-86951	-	TSC_hg19_v1_chr11_-_75141247 BC042952 BC057763	-87315	-	HQ258227 BC132708 BC132710 TSC_hg19_v1_chr11_-_75141083 AK091109 AX746783	-87486	-	BC090053 AF318351 NM_030792	7962	-	AF318377 TSC_hg19_v1_chr11_-_75236890	8332	-	NM_001207014 NM_001235 TSC_hg19_v1_chr11_+_75273168 AK290124	44589	+	NM_001039548|KLHL35|283212|kelch-like 35 (Drosophila)##BC042952|KLHL35|283212|kelch-like 35 (Drosophila)##BC057763|KLHL35|283212|kelch-like 35 (Drosophila)##HQ258227|KLHL35|283212|kelch-like 35 (Drosophila)##BC132708|KLHL35|283212|kelch-like 35 (Drosophila)##BC132710|KLHL35|283212|kelch-like 35 (Drosophila)##AK091109|KLHL35|283212|kelch-like 35 (Drosophila)##BC090053|GDPD5|81544|glycerophosphodiester phosphodiesterase domain containing 5##AF318351|GDPD5|81544|glycerophosphodiester phosphodiesterase domain containing 5##NM_030792|GDPD5|81544|glycerophosphodiester phosphodiesterase domain containing 5##AF318377|GDPD5|81544|glycerophosphodiester phosphodiesterase domain containing 5##NM_001207014|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##NM_001235|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AK290124|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)	0.892843	0.0	denovo_WM_7:-37:0.315	denovo_WM_7:-39:0.478
chr17	45269977	45270106	reg1002581.p1	9.431	+	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	-3357	-	TSC_hg19_v1_chr17_-_45266641 AK299342	-3402	-	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	-3463	-	NM_001002841 X52005	16409	+	NM_002476 TSC_hg19_v1_chr17_+_45286713 BC030228 M24121 M36172 X13955 AB528188 AM392523 AM392536 AM392902 AM393643 AM393677	16709	+	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	61143	+	NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001002841|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X52005|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##NM_002476|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC030228|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M24121|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M36172|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X13955|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392523|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392536|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392902|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393643|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393677|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	0.848507	0.0	denovo_WM_7:-17:0.276	denovo_WM_7:-19:0.573
chr18	2636843	2637023	reg1000640.p1	9.431	+	TSC_hg19_v1_chr18_+_2571589 AF017790	-65338	+	NM_006101 BC005239 TSC_hg19_v1_chr18_+_2571579 AK289396 AK313184 BC035617 BC010171	-65388	+	AK290001 BC111020 NM_022840	-65478	-	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	18981	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	210098	+	AB026706 TSC_hg19_v1_chr18_+_2907037	270068	+	AF017790|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##NM_006101|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC005239|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK289396|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK313184|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC035617|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC010171|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK290001|METTL4|64863|methyltransferase like 4##BC111020|METTL4|64863|methyltransferase like 4##NM_022840|METTL4|64863|methyltransferase like 4##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##AB026706|EMILIN2|84034|elastin microfibril interfacer 2	0.0	0.0	
chr20	46133703	46133788	reg1001577.p3	9.431	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-3061	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-3123	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-148257	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	281007	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	281573	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1310541	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	3.756734	0.0	denovo_WM_7:3:0.270	denovo_WM_7:4:0.208	denovo_WM_7:21:0.285	denovo_WM_7:49:0.734	denovo_WM_7:51:0.234	denovo_WM_7:71:0.807
chr20	57225760	57225940	reg1002673.p1	9.428	+	BC101758 BC101760 AK074647 NM_153360 AK293299	-135952	-	AK124571 TSC_hg19_v1_chr20_+_57022525	-203358	+	TSC_hg19_v1_chr20_+_56964291 BC001712 AF086628 AF086629 AK298036 AK127252 AB529043 CU674842 BT009811	-261396	+	TSC_hg19_v1_chr20_+_57226338 AK316547 NM_001001433 NM_001134772 NM_001134773 NM_001204868 NM_003763 AK304867 AB209296	538	+	TSC_hg19_v1_chr20_+_57226873 BC019042 AF008935 AF008936 AF008937 BC073876 AF038897 AF428146 AK026970	1141	+	NM_001204872 NM_001204873 AK297667 AK307771	38338	+	BC101758|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##BC101760|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK074647|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##NM_153360|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK293299|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK124571|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##BC001712|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AF086628|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AF086629|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK298036|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK127252|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##BT009811|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK316547|STX16|8675|syntaxin 16##NM_001001433|STX16|8675|syntaxin 16##NM_001134772|STX16|8675|syntaxin 16##NM_001134773|STX16|8675|syntaxin 16##NM_001204868|STX16|8675|syntaxin 16##NM_003763|STX16|8675|syntaxin 16##AK304867|STX16|8675|syntaxin 16##AB209296|STX16-NPEPL1|100534593|STX16-NPEPL1 readthrough (non-protein coding)##BC019042|STX16|8675|syntaxin 16##AF008935|STX16|8675|syntaxin 16##AF008936|STX16|8675|syntaxin 16##AF008937|STX16|8675|syntaxin 16##BC073876|STX16|8675|syntaxin 16##AF038897|STX16|8675|syntaxin 16##AF428146|STX16|8675|syntaxin 16##AK026970|STX16|8675|syntaxin 16##NM_001204872|NPEPL1|79716|aminopeptidase-like 1##NM_001204873|NPEPL1|79716|aminopeptidase-like 1##AK297667|NPEPL1|79716|aminopeptidase-like 1##AK307771|NPEPL1|79716|aminopeptidase-like 1	1.996878	0.0	denovo_WM_7:13:0.443	denovo_WM_7:14:0.443	denovo_WM_7:-52:0.234	denovo_WM_7:-53:0.234	denovo_WM_7:-54:0.234	denovo_WM_7:-55:0.234
chrX	30615806	30615923	reg1002394.p2	9.428	+	TSC_hg19_v1_chrX_-_30595884 AK021639 BC020611 NM_025159	-19907	-	HQ692832 AB464646 BC011564 NM_000475	-288378	-	NM_177404 BC013772	-350568	+	TSC_hg19_v1_chrX_+_30671493 BC042421 BC071595 NM_000167 NM_001128127 NM_001205019 NM_203391	55630	+	TSC_hg19_v1_chrX_+_30671539 AK313215	55678	+	TSC_hg19_v1_chrX_+_30671612 L13943 AK294938 AK294304 BX647604 AK308238 BC037549 CU688226 DQ891580 DQ894773	55764	+	AK021639|CXorf21|80231|chromosome X open reading frame 21##BC020611|CXorf21|80231|chromosome X open reading frame 21##NM_025159|CXorf21|80231|chromosome X open reading frame 21##HQ692832|NR0B1|190|nuclear receptor subfamily 0, group B, member 1##BC011564|NR0B1|190|nuclear receptor subfamily 0, group B, member 1##NM_000475|NR0B1|190|nuclear receptor subfamily 0, group B, member 1##NM_177404|MAGEB1|4112|melanoma antigen family B, 1##BC013772|MAGEB1|4112|melanoma antigen family B, 1##BC042421|GK|2710|glycerol kinase##BC071595|GK|2710|glycerol kinase##NM_000167|GK|2710|glycerol kinase##NM_001128127|GK|2710|glycerol kinase##NM_001205019|GK|2710|glycerol kinase##NM_203391|GK|2710|glycerol kinase##AK313215|GK|2710|glycerol kinase##L13943|GK|2710|glycerol kinase##AK294938|GK|2710|glycerol kinase##AK294304|GK|2710|glycerol kinase##BX647604|GK|2710|glycerol kinase##AK308238|GK|2710|glycerol kinase##BC037549|GK|2710|glycerol kinase##DQ891580|GK|2710|glycerol kinase##DQ894773|GK|2710|glycerol kinase	0.999568	0.0	denovo_WM_7:-24:0.722
chr19	1903375	1903523	reg1001293.p1	9.427	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-17945	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-17978	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-18004	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	1903	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	1956	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	37714	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	2.294534	0.0	denovo_WM_7:9:0.766	denovo_WM_7:-80:0.942
chr5	3278017	3278183	reg1002797.p1	9.426	+	AY249325 NM_178569 BC101608 BC101634 BC143638 BC143639 BC143640 BC171731	-525799	+	AB188492 NM_001134222 NM_033267 BC065189	-526329	-	AB527533 BC110912 BC144204 BC136505 BC136506 AF124733 NM_016358	-1395279	-	AY335938 NM_024337	318067	+	AK127746 DQ266047 NM_139056 TSC_hg19_v1_chr5_+_5140442 AB462933 AJ315734	1862411	+	TSC_hg19_v1_chr5_+_5422777 AK126937	2144675	+	AY249325|C5orf38|153571|chromosome 5 open reading frame 38##NM_178569|C5orf38|153571|chromosome 5 open reading frame 38##BC101608|C5orf38|153571|chromosome 5 open reading frame 38##BC101634|C5orf38|153571|chromosome 5 open reading frame 38##BC143638|C5orf38|153571|chromosome 5 open reading frame 38##BC143639|C5orf38|153571|chromosome 5 open reading frame 38##BC143640|C5orf38|153571|chromosome 5 open reading frame 38##BC171731|C5orf38|153571|chromosome 5 open reading frame 38##AB188492|IRX2|153572|iroquois homeobox 2##NM_001134222|IRX2|153572|iroquois homeobox 2##NM_033267|IRX2|153572|iroquois homeobox 2##BC065189|IRX2|153572|iroquois homeobox 2##BC110912|IRX4|50805|iroquois homeobox 4##BC144204|IRX4|50805|iroquois homeobox 4##BC136505|IRX4|50805|iroquois homeobox 4##BC136506|IRX4|50805|iroquois homeobox 4##AF124733|IRX4|50805|iroquois homeobox 4##NM_016358|IRX4|50805|iroquois homeobox 4##AY335938|IRX1|79192|iroquois homeobox 1##NM_024337|IRX1|79192|iroquois homeobox 1##AK127746|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##DQ266047|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##NM_139056|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AJ315734|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16	0.893888	0.0	denovo_WM_7:-13:0.396	denovo_WM_7:-14:0.327
chr7	23579404	23579561	reg1002454.p2	9.426	+	CU677835 DQ892442 DQ895653 AB528532 TSC_hg19_v1_chr7_-_23571604 BC069011 BC017094 U53209 AB097048 AK300565 AK311687 AK314801 AK300741 AK310719 AK298815 NM_013293	-7918	-	TSC_hg19_v1_chr7_+_23530136 BC026177	-49315	+	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	-69484	-	TSC_hg19_v1_chr7_+_23637005 NM_138771 AK289911 AY358713 AX721042	57533	+	TSC_hg19_v1_chr7_+_23719821 NM_001127364 NM_001127365 NM_199136 BC042034 AK127774 AL832127 BC026000 BC063130 CU687660	140341	+	AK057271 NM_001122833 NM_031414 BC047506 BC059374 BC033018 AF285599 AK292474 AK302689 AF332194 NM_032944	170434	+	DQ892442|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##DQ895653|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC069011|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC017094|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##U53209|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AB097048|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300565|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK311687|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK314801|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300741|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK310719|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK298815|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_013293|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_138771|CCDC126|90693|coiled-coil domain containing 126##AK289911|CCDC126|90693|coiled-coil domain containing 126##AY358713|CCDC126|90693|coiled-coil domain containing 126##NM_001127364|C7orf46|340277|chromosome 7 open reading frame 46##NM_001127365|C7orf46|340277|chromosome 7 open reading frame 46##NM_199136|C7orf46|340277|chromosome 7 open reading frame 46##BC042034|C7orf46|340277|chromosome 7 open reading frame 46##AK127774|C7orf46|340277|chromosome 7 open reading frame 46##AL832127|C7orf46|340277|chromosome 7 open reading frame 46##BC026000|C7orf46|340277|chromosome 7 open reading frame 46##BC063130|C7orf46|340277|chromosome 7 open reading frame 46##AK057271|STK31|56164|serine/threonine kinase 31##NM_001122833|STK31|56164|serine/threonine kinase 31##NM_031414|STK31|56164|serine/threonine kinase 31##BC047506|STK31|56164|serine/threonine kinase 31##BC059374|STK31|56164|serine/threonine kinase 31##BC033018|STK31|56164|serine/threonine kinase 31##AF285599|STK31|56164|serine/threonine kinase 31##AK292474|STK31|56164|serine/threonine kinase 31##AK302689|STK31|56164|serine/threonine kinase 31##AF332194|STK31|56164|serine/threonine kinase 31##NM_032944|STK31|56164|serine/threonine kinase 31	1.001385	0.0	denovo_WM_7:6:0.243	denovo_WM_7:9:0.380
chr13	113345754	113345902	reg1002504.p2	9.423	+	TSC_hg19_v1_chr13_+_113344493 NM_015205 NM_032189	-1249	+	TSC_hg19_v1_chr13_-_113344130 AK057085	-1722	-	AK129953 NM_207440	-44471	+	TSC_hg19_v1_chr13_+_113622764 AB002360	276957	+	TSC_hg19_v1_chr13_+_113623680 AK315969 NM_001112732 AK295670	277767	+	TSC_hg19_v1_chr13_+_113633625 AK307867	287811	+	NM_015205|ATP11A|23250|ATPase, class VI, type 11A##NM_032189|ATP11A|23250|ATPase, class VI, type 11A##AK057085|LOC440149|440149|uncharacterized LOC440149##AK129953|C13orf35|400165|chromosome 13 open reading frame 35##NM_207440|C13orf35|400165|chromosome 13 open reading frame 35##AB002360|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK315969|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##NM_001112732|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK295670|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK307867|MCF2L|23263|MCF.2 cell line derived transforming sequence-like	0.997726	0.0	denovo_WM_7:-39:0.238	denovo_WM_7:-40:0.238	denovo_WM_7:-41:0.238	denovo_WM_7:-42:0.238
chr4	177198775	177198907	reg1002023.p1	9.423	+	AY057053 CU688084 AK096441 BC065710 BX647857 NM_080874	-8526	-	CU692400 TSC_hg19_v1_chr4_-_177116722 BC021731 BC029428 AY040204 NM_144644	-82074	-	TSC_hg19_v1_chr4_+_176987148 BC118549 BC118627 AK098748 DQ426895 DQ426896	-211672	+	TSC_hg19_v1_chr4_+_177241098 NM_021928	42212	+	TSC_hg19_v1_chr4_+_177241122 AK026302 AL136660 AY359044 BC043490 BC053883 BC047290 CU690386 EU831652 EU831735	42327	+	TSC_hg19_v1_chr4_-_177241652 AK096223	42790	-	AY057053|ASB5|140458|ankyrin repeat and SOCS box containing 5##AK096441|ASB5|140458|ankyrin repeat and SOCS box containing 5##BC065710|ASB5|140458|ankyrin repeat and SOCS box containing 5##BX647857|ASB5|140458|ankyrin repeat and SOCS box containing 5##NM_080874|ASB5|140458|ankyrin repeat and SOCS box containing 5##BC021731|SPATA4|132851|spermatogenesis associated 4##BC029428|SPATA4|132851|spermatogenesis associated 4##AY040204|SPATA4|132851|spermatogenesis associated 4##NM_144644|SPATA4|132851|spermatogenesis associated 4##BC118549|WDR17|116966|WD repeat domain 17##BC118627|WDR17|116966|WD repeat domain 17##AK098748|WDR17|116966|WD repeat domain 17##DQ426895|WDR17|116966|WD repeat domain 17##DQ426896|WDR17|116966|WD repeat domain 17##NM_021928|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AK026302|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AL136660|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AY359044|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC043490|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC053883|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC047290|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831652|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831735|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)	1.017932	0.0	
chr10	98048219	98048399	reg1000383.p3	9.420	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-17066	-	BC109045 BC109046 TSC_hg19_v1_chr10_+_97889812 AK095317 BC030967	-158567	+	TSC_hg19_v1_chr10_+_97889471 CR627437 NM_014803 BC011627	-158813	+	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	15859	+	AF367761 NM_001040102 NM_001040103 NM_033207	70765	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	225254	-	AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC109045|ZNF518A|9849|zinc finger protein 518A##BC109046|ZNF518A|9849|zinc finger protein 518A##BC030967|ZNF518A|9849|zinc finger protein 518A##CR627437|ZNF518A|9849|zinc finger protein 518A##NM_014803|ZNF518A|9849|zinc finger protein 518A##NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2	0.0	0.0	
chr1	36004162	36004319	reg1002530.p1	9.420	+	TSC_hg19_v1_chr1_-_35920081 AK090878	-84082	-	BX648067 TSC_hg19_v1_chr1_+_35851133	-153123	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-269612	+	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	18729	-	AK316252 TSC_hg19_v1_chr1_-_36023002	18763	-	TSC_hg19_v1_chr1_-_36023005 NM_024874	18791	-	AK090878|KIAA0319L|79932|KIAA0319-like##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like##AK316252|KIAA0319L|79932|KIAA0319-like##NM_024874|KIAA0319L|79932|KIAA0319-like	0.99712	0.0	
chr16	11552332	11552477	reg1002821.p2	9.420	+	TSC_hg19_v1_chr16_+_11439315 BC013040	-113086	+	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	-113110	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-177262	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	127783	-	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	128385	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	209894	+	BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin	0.996624	0.0	denovo_WM_7:-34:0.816
chr17	30646534	30646682	reg1001872.p1	9.419	+	AJ313480 BC100975 BC100976 BC100978 NM_138328 BC100977	-53414	+	TSC_hg19_v1_chr17_+_30469588 BC092401 BC068463 AY094972 BC125104 BC125105 AL136929 BC029029 AK294407 AB527368 AM393207 BC146694 AJ517412	-176969	+	TSC_hg19_v1_chr17_+_30469544 BC110895	-177063	+	TSC_hg19_v1_chr17_-_30669193 AF052093 CU691078 BC054035 BC047325 BC026017 BC035715 AF305686 NM_022344	22599	-	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	30548	+	TSC_hg19_v1_chr17_+_30677178 AK298950 AK226172	30573	+	AJ313480|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100975|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100976|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100978|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##NM_138328|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100977|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC092401|RHOT1|55288|ras homolog gene family, member T1##BC068463|RHOT1|55288|ras homolog gene family, member T1##AY094972|RHOT1|55288|ras homolog gene family, member T1##BC125104|RHOT1|55288|ras homolog gene family, member T1##BC125105|RHOT1|55288|ras homolog gene family, member T1##AL136929|RHOT1|55288|ras homolog gene family, member T1##BC029029|RHOT1|55288|ras homolog gene family, member T1##AK294407|RHOT1|55288|ras homolog gene family, member T1##AM393207|RHOT1|55288|ras homolog gene family, member T1##BC146694|RHOT1|55288|ras homolog gene family, member T1##AJ517412|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1##AF052093|C17orf75|64149|chromosome 17 open reading frame 75##BC054035|C17orf75|64149|chromosome 17 open reading frame 75##BC047325|C17orf75|64149|chromosome 17 open reading frame 75##BC026017|C17orf75|64149|chromosome 17 open reading frame 75##BC035715|C17orf75|64149|chromosome 17 open reading frame 75##AF305686|C17orf75|64149|chromosome 17 open reading frame 75##NM_022344|C17orf75|64149|chromosome 17 open reading frame 75##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207##AK298950|ZNF207|7756|zinc finger protein 207##AK226172|ZNF207|7756|zinc finger protein 207	0.0	0.360871	CTCF.p2:32:0.361
chr10	94459522	94459683	reg1002331.p2	9.418	+	TSC_hg19_v1_chr10_+_94449711 NM_002729 AK309463 AK314891 BC014336 BC015110 L16499 X67235 AB528006 BC050638 EU446478	-9893	+	TSC_hg19_v1_chr10_+_94352960 BC126211 BC136474 U37426 X85137	-106559	+	TSC_hg19_v1_chr10_+_94352886 BC050421 BC050667 AK314258	-106705	+	NM_001013848	134867	+	AK293857 NM_019053 AF220217 TSC_hg19_v1_chr10_+_94608276 AL832501 EF571007 AK315544 BC028395 CU688490 EU832839 GQ129240	148655	+	AY356349 NM_183374	361418	+	NM_002729|HHEX|3087|hematopoietically expressed homeobox##AK314891|HHEX|3087|hematopoietically expressed homeobox##BC014336|HHEX|3087|hematopoietically expressed homeobox##BC015110|HHEX|3087|hematopoietically expressed homeobox##L16499|HHEX|3087|hematopoietically expressed homeobox##X67235|HHEX|3087|hematopoietically expressed homeobox##BC050638|HHEX|3087|hematopoietically expressed homeobox##EU446478|HHEX|3087|hematopoietically expressed homeobox##BC126211|KIF11|3832|kinesin family member 11##BC136474|KIF11|3832|kinesin family member 11##U37426|KIF11|3832|kinesin family member 11##X85137|KIF11|3832|kinesin family member 11##BC050421|KIF11|3832|kinesin family member 11##BC050667|KIF11|3832|kinesin family member 11##AK314258|KIF11|3832|kinesin family member 11##NM_001013848|EXOC6|54536|exocyst complex component 6##AK293857|EXOC6|54536|exocyst complex component 6##NM_019053|EXOC6|54536|exocyst complex component 6##AF220217|EXOC6|54536|exocyst complex component 6##AL832501|EXOC6|54536|exocyst complex component 6##EF571007|EXOC6|54536|exocyst complex component 6##AK315544|EXOC6|54536|exocyst complex component 6##BC028395|EXOC6|54536|exocyst complex component 6##EU832839|EXOC6|54536|exocyst complex component 6##GQ129240|EXOC6|54536|exocyst complex component 6##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1	0.999819	0.0	
chr11	32921146	32921284	reg1002728.p1	9.418	+	TSC_hg19_v1_chr11_+_32914677 BC112935 NM_001076786	-6640	+	TSC_hg19_v1_chr11_+_32851476 BC010052 NM_024081 BC063393 AF326351	-69665	+	BC146800 AK131470 NM_001008391 BC062749	-105038	-	TSC_hg19_v1_chr11_+_33037423 BC030970 NM_001077242 AK294934 BC011446 AJ245600 AK295960 EU446553 CU689058	116233	+	AF447588 NM_139160	116512	+	NM_018393 AK090646 TSC_hg19_v1_chr11_+_33061117 BC041696	139867	+	BC112935|QSER1|79832|glutamine and serine rich 1##NM_001076786|QSER1|79832|glutamine and serine rich 1##BC010052|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##NM_024081|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##BC063393|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##AF326351|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##BC146800|CCDC73|493860|coiled-coil domain containing 73##AK131470|CCDC73|493860|coiled-coil domain containing 73##NM_001008391|CCDC73|493860|coiled-coil domain containing 73##BC062749|CCDC73|493860|coiled-coil domain containing 73##BC030970|DEPDC7|91614|DEP domain containing 7##NM_001077242|DEPDC7|91614|DEP domain containing 7##AK294934|DEPDC7|91614|DEP domain containing 7##BC011446|DEPDC7|91614|DEP domain containing 7##AJ245600|DEPDC7|91614|DEP domain containing 7##AK295960|DEPDC7|91614|DEP domain containing 7##EU446553|DEPDC7|91614|DEP domain containing 7##AF447588|DEPDC7|91614|DEP domain containing 7##NM_139160|DEPDC7|91614|DEP domain containing 7##NM_018393|TCP11L1|55346|t-complex 11 (mouse)-like 1##AK090646|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC041696|TCP11L1|55346|t-complex 11 (mouse)-like 1	0.797314	0.0	denovo_WM_7:-4:0.640
chr4	25162033	25162164	reg1002745.p1	9.417	+	AF146396 AJ277541 BC117202 BC126213 TSC_hg19_v1_chr4_-_25162072 AJ238617 EU832146 EU832239 BC023539 BX648976 BC012188 AK292476 NM_016955	-43	-	AB067503 AF467955 AJ487516 AJ487958 BC101759 BC101761 NM_018176 TSC_hg19_v1_chr4_-_25032569	-129661	-	AK302905 AL834257 NM_173463	-180301	-	AK296302 AK095450 TSC_hg19_v1_chr4_+_25162325	207	+	TSC_hg19_v1_chr4_+_25235654 BC051749 NM_018323 AK128622 AK001967 AY091514 AY065990 AF411320	73620	+	TSC_hg19_v1_chr4_+_25314405 NM_024936 BC157834 BC171821 AK299211 AK309675 AY629351 BC016914 AF161537 CU677765	152349	+	AF146396|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##AJ277541|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##BC117202|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##BC126213|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##AJ238617|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##EU832146|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##EU832239|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##BC023539|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##BX648976|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##BC012188|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##AK292476|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##NM_016955|SEPSECS|51091|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase##AB067503|LGI2|55203|leucine-rich repeat LGI family, member 2##AF467955|LGI2|55203|leucine-rich repeat LGI family, member 2##AJ487516|LGI2|55203|leucine-rich repeat LGI family, member 2##AJ487958|LGI2|55203|leucine-rich repeat LGI family, member 2##BC101759|LGI2|55203|leucine-rich repeat LGI family, member 2##BC101761|LGI2|55203|leucine-rich repeat LGI family, member 2##NM_018176|LGI2|55203|leucine-rich repeat LGI family, member 2##AK302905|CCDC149|91050|coiled-coil domain containing 149##AL834257|CCDC149|91050|coiled-coil domain containing 149##NM_173463|CCDC149|91050|coiled-coil domain containing 149##AK296302|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##AK095450|LOC285540|285540|uncharacterized LOC285540##BC051749|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##NM_018323|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##AK128622|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##AK001967|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##AY091514|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##AY065990|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##AF411320|PI4K2B|55300|phosphatidylinositol 4-kinase type 2 beta##NM_024936|ZCCHC4|29063|zinc finger, CCHC domain containing 4##BC157834|ZCCHC4|29063|zinc finger, CCHC domain containing 4##BC171821|ZCCHC4|29063|zinc finger, CCHC domain containing 4##AK299211|ZCCHC4|29063|zinc finger, CCHC domain containing 4##AK309675|ZCCHC4|29063|zinc finger, CCHC domain containing 4##AY629351|ZCCHC4|29063|zinc finger, CCHC domain containing 4##BC016914|ZCCHC4|29063|zinc finger, CCHC domain containing 4##AF161537|ZCCHC4|29063|zinc finger, CCHC domain containing 4	1.211327	0.0	denovo_WM_7:29:0.298	denovo_WM_7:34:0.312
chr15	91138776	91138903	reg1001780.p1	9.416	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-65643	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-207300	+	TSC_hg19_v1_chr15_+_90931506 BC005906	-207333	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	121775	+	NM_002569 X17094	273045	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	288862	+	AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC005906|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene	0.996108	0.0	denovo_WM_7:-35:0.249	denovo_WM_7:-36:0.249	denovo_WM_7:-37:0.249	denovo_WM_7:-38:0.249
chr1	183925832	183925976	reg1002884.p1	9.414	+	AK311716 TSC_hg19_v1_chr1_+_183774253 AF186779 AB023176 AK304293 BC039250 AK309237 AK311701	-151613	+	BC021711 NM_203454 AK098557	-303456	-	NM_015149 AF186780 BX537416 AK316526 AK295179 AK295611 BC136591	-320562	+	AB385353 CU690156 AK293973 TSC_hg19_v1_chr1_-_184006634	80661	-	AB011156 AF288389 NM_015101 BC035672 AK095192 TSC_hg19_v1_chr1_-_184006893	80960	-	TSC_hg19_v1_chr1_+_184020866 AF288394 NM_001127394 NM_052965 BC022030 AK098196 CU692464 AK296655 AK307241	94956	+	AK311716|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AF186779|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AB023176|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AK304293|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##BC039250|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AK311701|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##BC021711|APOBEC4|403314|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)##NM_203454|APOBEC4|403314|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)##AK098557|APOBEC4|403314|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)##NM_015149|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AF186780|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##BX537416|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AK316526|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AK295179|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AK295611|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##BC136591|RGL1|23179|ral guanine nucleotide dissociation stimulator-like 1##AK293973|GLT25D2|23127|glycosyltransferase 25 domain containing 2##AB011156|GLT25D2|23127|glycosyltransferase 25 domain containing 2##AF288389|GLT25D2|23127|glycosyltransferase 25 domain containing 2##NM_015101|GLT25D2|23127|glycosyltransferase 25 domain containing 2##BC035672|GLT25D2|23127|glycosyltransferase 25 domain containing 2##AK095192|GLT25D2|23127|glycosyltransferase 25 domain containing 2##AF288394|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)##NM_001127394|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)##NM_052965|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)##BC022030|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)##AK098196|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)##AK296655|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)##AK307241|TSEN15|116461|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	0.0	0.0	
chr10	101525503	101525655	reg1002612.p1	9.413	+	BX537557 NM_004376 NM_078470	-33157	-	TSC_hg19_v1_chr10_+_101491990 BC028948 BC011016 AF132966 AK302507 AK314687 AK001142 BC015059 BC021105	-33546	+	TSC_hg19_v1_chr10_+_101491984 NM_015960	-33612	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	16916	+	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	16984	+	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	165124	-	BX537557|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_004376|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_078470|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC028948|CUTC|51076|cutC copper transporter homolog (E. coli)##BC011016|CUTC|51076|cutC copper transporter homolog (E. coli)##AF132966|CUTC|51076|cutC copper transporter homolog (E. coli)##AK302507|CUTC|51076|cutC copper transporter homolog (E. coli)##AK314687|CUTC|51076|cutC copper transporter homolog (E. coli)##AK001142|CUTC|51076|cutC copper transporter homolog (E. coli)##BC015059|CUTC|51076|cutC copper transporter homolog (E. coli)##BC021105|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_015960|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##AK128576|DNMBP|23268|dynamin binding protein	0.998499	0.0	denovo_WM_7:-5:0.457	denovo_WM_7:-6:0.457
chr10	4173948	4174115	reg1002301.p1	9.413	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-346522	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-346720	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-959026	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	694387	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	831483	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	831592	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	1.037382	0.0	
chr1	236544981	236545079	reg1002101.p1	9.413	+	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	-99714	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	-99842	-	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-239154	+	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	12653	+	AK096339 NM_080738 AY028914 AK291930 BC006533 AY071862	13792	+	NM_201545 AK098613	136511	+	AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain##AK096339|EDARADD|128178|EDAR-associated death domain##NM_080738|EDARADD|128178|EDAR-associated death domain##AY028914|EDARADD|128178|EDAR-associated death domain##AK291930|EDARADD|128178|EDAR-associated death domain##BC006533|EDARADD|128178|EDAR-associated death domain##AY071862|EDARADD|128178|EDAR-associated death domain##NM_201545|LGALS8|3964|lectin, galactoside-binding, soluble, 8##AK098613|LGALS8|3964|lectin, galactoside-binding, soluble, 8	1.983408	0.0	denovo_WM_7:53:0.935
chr16	53468195	53468325	reg1001643.p1	9.413	+	NM_001207030	-63220	-	TSC_hg19_v1_chr16_+_53164923 DQ333316	-303200	+	TSC_hg19_v1_chr16_+_53133091 AK092208 AX747409 BC033770	-335161	+	TSC_hg19_v1_chr16_+_53468350 NM_005611	92	+	TSC_hg19_v1_chr16_+_53468362 BC034490	103	+	AK307881 TSC_hg19_v1_chr16_+_53468373	113	+	NM_001207030|LOC643802|643802|u3 small nucleolar ribonucleoprotein protein MPP10-like##DQ333316|CHD9|80205|chromodomain helicase DNA binding protein 9##AK092208|CHD9|80205|chromodomain helicase DNA binding protein 9##BC033770|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_005611|RBL2|5934|retinoblastoma-like 2 (p130)##BC034490|RBL2|5934|retinoblastoma-like 2 (p130)##AK307881|RBL2|5934|retinoblastoma-like 2 (p130)	0.0	0.0	
chr5	150613297	150613451	reg1002746.p1	9.413	+	TSC_hg19_v1_chr5_-_150603654 AK292841 AK298063 AL713742 NM_015621	-9694	-	TSC_hg19_v1_chr5_-_150603648 AK225826	-9743	-	TSC_hg19_v1_chr5_-_150537341 NM_001155	-75986	-	NM_000405 NM_001167607 TSC_hg19_v1_chr5_+_150632745 AK225978 L01439 M76477 AK312494 X62078 AK298867 BC009273 X61095 CU679281 DQ891914 DQ895098 X16087	19341	+	AK127978 NM_001145017 NM_181774	69955	-	BC101100 BC101101 BC101102 BC101103 AK297682 AY162214 AK122630 AK309575 NM_181776	113745	-	AK292841|CCDC69|26112|coiled-coil domain containing 69##AK298063|CCDC69|26112|coiled-coil domain containing 69##AL713742|CCDC69|26112|coiled-coil domain containing 69##NM_015621|CCDC69|26112|coiled-coil domain containing 69##AK225826|CCDC69|26112|coiled-coil domain containing 69##NM_001155|ANXA6|309|annexin A6##NM_000405|GM2A|2760|GM2 ganglioside activator##NM_001167607|GM2A|2760|GM2 ganglioside activator##L01439|GM2A|2760|GM2 ganglioside activator##M76477|GM2A|2760|GM2 ganglioside activator##AK312494|GM2A|2760|GM2 ganglioside activator##X62078|GM2A|2760|GM2 ganglioside activator##AK298867|GM2A|2760|GM2 ganglioside activator##BC009273|GM2A|2760|GM2 ganglioside activator##X61095|GM2A|2760|GM2 ganglioside activator##DQ891914|GM2A|2760|GM2 ganglioside activator##DQ895098|GM2A|2760|GM2 ganglioside activator##X16087|GM2A|2760|GM2 ganglioside activator##AK127978|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_001145017|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_181774|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##BC101100|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101101|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101102|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101103|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK297682|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AY162214|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK309575|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##NM_181776|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2	0.993759	0.0	denovo_WM_7:-24:0.624
chr6	36694446	36694626	reg1002683.p1	9.410	+	AK125083 TSC_hg19_v1_chr6_+_36665627	-28908	+	TSC_hg19_v1_chr6_+_36646490 BC013967 AB209881 BC001935 BC000312 L25610 L26165 U03106 S67388 BC000275 L47232 L47233 AY008263	-48011	+	NM_000389 TSC_hg19_v1_chr6_+_36646486 AK309512 NM_001220778 U09579	-48065	+	TSC_hg19_v1_chr6_-_36807217 NM_020939	112682	-	TSC_hg19_v1_chr6_-_36807775 AB046819	113256	-	DQ892513 DQ895727 AB528504 TSC_hg19_v1_chr6_-_36842573 AK026636	148041	-	AK125083|RAB44|401258|RAB44, member RAS oncogene family##BC013967|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AB209881|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC001935|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000312|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L25610|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L26165|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U03106|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##S67388|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000275|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47232|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47233|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_000389|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AK309512|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_001220778|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U09579|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_020939|CPNE5|57699|copine V##AB046819|CPNE5|57699|copine V##DQ892513|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##DQ895727|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##AK026636|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1	0.998582	0.0	denovo_WM_7:51:0.494	denovo_WM_7:52:0.494
chr19	3554402	3554581	reg1002700.p2	9.409	+	NM_001135580	-15337	+	AB033068 NM_001136197 NM_001136198 DQ890739 AF080397 CU680596 AB013462 AB013463 AF433157 BT007115	-31521	+	TSC_hg19_v1_chr19_+_3506308 NM_016263 BC013413 AF102507 AF083810	-48176	+	DQ892284 DQ895484 CU691388 TSC_hg19_v1_chr19_-_3557547	2984	-	TSC_hg19_v1_chr19_-_3557559 BC036706	3064	-	BC094804 BC068439 NM_001042680 NM_021731 NM_174983 TSC_hg19_v1_chr19_-_3557583	3083	-	NM_001135580|C19orf71|100128569|chromosome 19 open reading frame 71##AB033068|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##NM_001136197|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##NM_001136198|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##DQ890739|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##AF080397|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##AB013462|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##AB013463|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##AF433157|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##BT007115|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##NM_016263|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##BC013413|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##AF102507|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##AF083810|FZR1|51343|fizzy/cell division cycle 20 related 1 (Drosophila)##DQ892284|MFSD12|126321|major facilitator superfamily domain containing 12##DQ895484|MFSD12|126321|major facilitator superfamily domain containing 12##BC036706|MFSD12|126321|major facilitator superfamily domain containing 12##BC068439|MFSD12|126321|major facilitator superfamily domain containing 12##NM_001042680|MFSD12|126321|major facilitator superfamily domain containing 12##NM_021731|MFSD12|126321|major facilitator superfamily domain containing 12##NM_174983|MFSD12|126321|major facilitator superfamily domain containing 12	0.985642	0.0	denovo_WM_7:-34:0.444	denovo_WM_7:-35:0.444
chr9	132780100	132780204	reg1002583.p2	9.408	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-182387	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-182430	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-182468	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	25202	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	25336	-	BC039728 NM_001136557 NM_001136558 NM_020960	35832	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	2.905345	0.0	denovo_WM_7:-35:0.270	denovo_WM_7:-38:0.322	denovo_WM_7:50:0.449	denovo_WM_7:51:0.449
chr11	65478858	65479033	reg1002614.p1	9.407	+	TSC_hg19_v1_chr11_-_65430567 U88316	-48388	-	TSC_hg19_v1_chr11_-_65430427 NM_001145138 NM_001243984 NM_001243985 NM_021975	-48504	-	TSC_hg19_v1_chr11_-_65430388 BC033522 BC011603 BC110830 BC014095 M62399 BC069248 AK308020 AK308478 AK303262	-48631	-	NM_001206833 NM_006388 NM_182709 NM_182710 AK313297 U74667 AK225100 AK226002	552	+	BC117167 BC143290 BC143296 BC093032 TSC_hg19_v1_chr11_+_65479722 AK304664 BC064912 U67734 AB463743 HQ258620 BC013211 BC000166 U40989	830	+	TSC_hg19_v1_chr11_-_65487976 L08647	9024	-	NM_001145138|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243984|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243985|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_021975|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC033522|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC011603|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC110830|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC014095|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##M62399|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC069248|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308020|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308478|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK303262|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001206833|KAT5|10524|K(lysine) acetyltransferase 5##NM_006388|KAT5|10524|K(lysine) acetyltransferase 5##NM_182709|KAT5|10524|K(lysine) acetyltransferase 5##NM_182710|KAT5|10524|K(lysine) acetyltransferase 5##AK313297|KAT5|10524|K(lysine) acetyltransferase 5##U74667|KAT5|10524|K(lysine) acetyltransferase 5##AK225100|KAT5|10524|K(lysine) acetyltransferase 5##AK226002|KAT5|10524|K(lysine) acetyltransferase 5##BC117167|KAT5|10524|K(lysine) acetyltransferase 5##BC143290|KAT5|10524|K(lysine) acetyltransferase 5##BC143296|KAT5|10524|K(lysine) acetyltransferase 5##BC093032|KAT5|10524|K(lysine) acetyltransferase 5##AK304664|KAT5|10524|K(lysine) acetyltransferase 5##BC064912|KAT5|10524|K(lysine) acetyltransferase 5##U67734|KAT5|10524|K(lysine) acetyltransferase 5##HQ258620|KAT5|10524|K(lysine) acetyltransferase 5##BC013211|KAT5|10524|K(lysine) acetyltransferase 5##BC000166|KAT5|10524|K(lysine) acetyltransferase 5##U40989|KAT5|10524|K(lysine) acetyltransferase 5##L08647|RNASEH2C|84153|ribonuclease H2, subunit C	0.999703	0.0	
chr16	22046603	22046777	reg1002628.p1	9.407	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-27202	+	BC039562 BC021724 BC028605 NM_173806	-34262	-	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	-81969	+	AK098260 AK128606 AK307544 NM_173615	57171	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	170983	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	262058	+	NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##BC039562|PDZD9|255762|PDZ domain containing 9##BC021724|PDZD9|255762|PDZ domain containing 9##BC028605|PDZD9|255762|PDZ domain containing 9##NM_173806|PDZD9|255762|PDZ domain containing 9##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)	0.994632	0.0	denovo_WM_7:35:0.239	denovo_WM_7:36:0.239	denovo_WM_7:37:0.239	denovo_WM_7:38:0.239
chr17	72524727	72524877	reg1002486.p2	9.404	+	TSC_hg19_v1_chr17_+_72462821 AF161346 AJ010101 AJ010102 AJ010103 AJ238323 AK309636 BC020681 AB590938 CU689350	-61992	+	AF020314 TSC_hg19_v1_chr17_+_72462772	-62032	+	NM_007261 AJ224864 BC032352	-62264	+	AF427618 AY359025 TSC_hg19_v1_chr17_-_72527570 AY646929	2741	-	TSC_hg19_v1_chr17_-_72527597 DQ893585 DQ896833 BC028091 AK290925 AK298665 NM_174892	2800	-	X66171 TSC_hg19_v1_chr17_-_72542230	17387	-	AF161346|CD300A|11314|CD300a molecule##AJ010101|CD300A|11314|CD300a molecule##AJ010102|CD300A|11314|CD300a molecule##AJ010103|CD300A|11314|CD300a molecule##AJ238323|CD300A|11314|CD300a molecule##AK309636|CD300A|11314|CD300a molecule##BC020681|CD300A|11314|CD300a molecule##AF020314|CD300A|11314|CD300a molecule##NM_007261|CD300A|11314|CD300a molecule##AJ224864|CD300A|11314|CD300a molecule##BC032352|CD300A|11314|CD300a molecule##AF427618|CD300LB|124599|CD300 molecule-like family member b##AY359025|CD300LB|124599|CD300 molecule-like family member b##AY646929|CD300LB|124599|CD300 molecule-like family member b##DQ893585|CD300LB|124599|CD300 molecule-like family member b##DQ896833|CD300LB|124599|CD300 molecule-like family member b##BC028091|CD300LB|124599|CD300 molecule-like family member b##AK290925|CD300LB|124599|CD300 molecule-like family member b##AK298665|CD300LB|124599|CD300 molecule-like family member b##NM_174892|CD300LB|124599|CD300 molecule-like family member b##X66171|CD300C|10871|CD300c molecule	0.978018	0.0	denovo_WM_7:-19:0.262	denovo_WM_7:-21:0.535
chr17	47074661	47074841	reg1002814.p1	9.402	+	BC096146 BC096147 BC096148 BC096149 BC069100 BC069663 BC069686 BC069746 M18185 NM_004123	-28798	-	AB464229 CU679209 CU691602 TSC_hg19_v1_chr17_-_47022173 AF156102 BC008976 NM_007241 BC038830	-52615	-	TSC_hg19_v1_chr17_+_46986002 BC015890 EF623992	-88779	+	TSC_hg19_v1_chr17_+_47074830 NM_001160423 NM_006546 AF198254 AK313229	79	+	AK302876 NM_001159388	135070	+	TSC_hg19_v1_chr17_+_47210130 NM_001159387 AJ517771	135349	+	BC096146|GIP|2695|gastric inhibitory polypeptide##BC096147|GIP|2695|gastric inhibitory polypeptide##BC096148|GIP|2695|gastric inhibitory polypeptide##BC096149|GIP|2695|gastric inhibitory polypeptide##BC069100|GIP|2695|gastric inhibitory polypeptide##BC069663|GIP|2695|gastric inhibitory polypeptide##BC069686|GIP|2695|gastric inhibitory polypeptide##BC069746|GIP|2695|gastric inhibitory polypeptide##M18185|GIP|2695|gastric inhibitory polypeptide##NM_004123|GIP|2695|gastric inhibitory polypeptide##AF156102|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC008976|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##NM_007241|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC038830|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC015890|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##EF623992|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##NM_001160423|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##NM_006546|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AF198254|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AK313229|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AK302876|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##NM_001159388|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##NM_001159387|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##AJ517771|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2	0.988967	0.0	
chr2	42354668	42354819	reg1002522.p2	9.401	+	AB528999 TSC_hg19_v1_chr2_+_42275979	-78782	+	TSC_hg19_v1_chr2_+_42275160 NM_138370	-79611	+	AK124893 NM_001242815	-173801	-	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	41832	+	AF127788 BT007371 CR542208 CU675543 DQ890566 DQ893729 TSC_hg19_v1_chr2_-_42588354 AB007618 BC005251 BC007095 NM_004718	233590	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	365815	-	NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4##AF127788|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BT007371|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##CR542208|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ890566|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ893729|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB007618|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC005251|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC007095|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##NM_004718|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3	0.0	0.0	
chr17	79270023	79270160	reg1002613.p1	9.399	+	TSC_hg19_v1_chr17_-_79269100 NM_001037984 NM_138570	-998	-	TSC_hg19_v1_chr17_-_79269071 BC014642	-1025	-	BC141912 BC127837 NM_001086521 TSC_hg19_v1_chr17_+_79213151 BC079831	-56957	+	AK096111 NM_178520	34382	-	NM_001080519	103448	+	TSC_hg19_v1_chr17_-_79478238 BC009544 BC010417 BC018861 M16247	208319	-	NM_001037984|SLC38A10|124565|solute carrier family 38, member 10##NM_138570|SLC38A10|124565|solute carrier family 38, member 10##BC014642|SLC38A10|124565|solute carrier family 38, member 10##BC127837|C17orf89|284184|chromosome 17 open reading frame 89##NM_001086521|C17orf89|284184|chromosome 17 open reading frame 89##BC079831|C17orf89|284184|chromosome 17 open reading frame 89##AK096111|TMEM105|284186|transmembrane protein 105##NM_178520|TMEM105|284186|transmembrane protein 105##NM_001080519|BAHCC1|57597|BAH domain and coiled-coil containing 1##BC009544|ACTG1|71|actin, gamma 1##BC010417|ACTG1|71|actin, gamma 1##BC018861|ACTG1|71|actin, gamma 1##M16247|ACTG1|71|actin, gamma 1	0.99355	0.0	denovo_WM_7:40:0.480
chr11	128395463	128395643	reg1002736.p1	9.398	+	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-3419	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-3590	-	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1522248	+	BX640634 NM_001143820	61899	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	168245	+	TSC_hg19_v1_chr11_+_128563966 AK313370	168408	+	BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1	0.987559	0.0	
chr8	102715316	102715460	reg1003366.p1	9.398	+	TSC_hg19_v1_chr8_+_102504840 AK023844 AK292853 BC069618 BC069633 BC069638 BC129822 BC129823	-210478	+	TSC_hg19_v1_chr8_+_102504667 NM_024915 AK296817 AK310221	-210723	+	TSC_hg19_v1_chr8_-_102217929 NM_001042510 NM_016096	-497434	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	87795	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	87812	-	NM_032041	88050	-	AK023844|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK292853|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069618|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069633|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069638|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129822|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129823|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_024915|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK296817|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK310221|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_001042510|ZNF706|51123|zinc finger protein 706##NM_016096|ZNF706|51123|zinc finger protein 706##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##NM_032041|NCALD|83988|neurocalcin delta	0.989882	0.0	denovo_WM_7:0:0.262	denovo_WM_7:-1:0.702
chr1	111772337	111772460	reg1001764.p1	9.396	+	NM_001025199 U58515 AK298466 AK223316	-6	+	NM_001025197 NM_004000 U58514 U49835 BC011460 BT006767 DQ893705 CU679936	-2082	+	TSC_hg19_v1_chr1_-_111747005 AK026110	-25423	-	AK290702 AB025008 AB025009 AY825504 NM_021797 AF290004 AY789444 NM_201653	61107	+	BC093891 BC101501 HM237139 NM_181643 AK303897 BC050319 AK310801 AK074433 BC068603 HM237140	116836	+	U09550 AK298757 AK314074 BC126177 BC136406 AY189737 NM_002557	197978	-	NM_001025199|CHI3L2|1117|chitinase 3-like 2##U58515|CHI3L2|1117|chitinase 3-like 2##AK298466|CHI3L2|1117|chitinase 3-like 2##AK223316|CHI3L2|1117|chitinase 3-like 2##NM_001025197|CHI3L2|1117|chitinase 3-like 2##NM_004000|CHI3L2|1117|chitinase 3-like 2##U58514|CHI3L2|1117|chitinase 3-like 2##U49835|CHI3L2|1117|chitinase 3-like 2##BC011460|CHI3L2|1117|chitinase 3-like 2##BT006767|CHI3L2|1117|chitinase 3-like 2##DQ893705|CHI3L2|1117|chitinase 3-like 2##AK026110|DENND2D|79961|DENN/MADD domain containing 2D##AK290702|CHIA|27159|chitinase, acidic##AB025008|CHIA|27159|chitinase, acidic##AB025009|CHIA|27159|chitinase, acidic##AY825504|CHIA|27159|chitinase, acidic##NM_021797|CHIA|27159|chitinase, acidic##AF290004|CHIA|27159|chitinase, acidic##AY789444|CHIA|27159|chitinase, acidic##NM_201653|CHIA|27159|chitinase, acidic##BC093891|C1orf88|128344|chromosome 1 open reading frame 88##BC101501|C1orf88|128344|chromosome 1 open reading frame 88##HM237139|C1orf88|128344|chromosome 1 open reading frame 88##NM_181643|C1orf88|128344|chromosome 1 open reading frame 88##AK303897|C1orf88|128344|chromosome 1 open reading frame 88##BC050319|C1orf88|128344|chromosome 1 open reading frame 88##AK310801|C1orf88|128344|chromosome 1 open reading frame 88##AK074433|C1orf88|128344|chromosome 1 open reading frame 88##BC068603|C1orf88|128344|chromosome 1 open reading frame 88##HM237140|C1orf88|128344|chromosome 1 open reading frame 88##U09550|OVGP1|5016|oviductal glycoprotein 1, 120kDa##AK298757|OVGP1|5016|oviductal glycoprotein 1, 120kDa##AK314074|OVGP1|5016|oviductal glycoprotein 1, 120kDa##BC126177|OVGP1|5016|oviductal glycoprotein 1, 120kDa##BC136406|OVGP1|5016|oviductal glycoprotein 1, 120kDa##AY189737|OVGP1|5016|oviductal glycoprotein 1, 120kDa##NM_002557|OVGP1|5016|oviductal glycoprotein 1, 120kDa	1.002063	0.0	
chr15	52670698	52670850	reg1002730.p1	9.396	+	AF272390 BC144611 BC064841 TSC_hg19_v1_chr15_-_52587968 AK301079 AK304136 NM_018728	-82840	-	AF161352 TSC_hg19_v1_chr15_-_52529707	-141068	-	NM_016194	-187210	-	TSC_hg19_v1_chr15_-_52821078 AB290180 AK303660 AK307600 NM_000259 NM_001142495 U90942 Y07759	150482	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	190285	-	TSC_hg19_v1_chr15_-_52861228 AF084555 BC003418 NM_006628	190458	-	AF272390|MYO5C|55930|myosin VC##BC144611|MYO5C|55930|myosin VC##BC064841|MYO5C|55930|myosin VC##AK301079|MYO5C|55930|myosin VC##AK304136|MYO5C|55930|myosin VC##NM_018728|MYO5C|55930|myosin VC##AF161352|MYO5C|55930|myosin VC##NM_016194|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AB290180|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK303660|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK307600|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_000259|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_001142495|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##U90942|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##Y07759|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AF084555|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC003418|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##NM_006628|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa	1.996838	0.0	denovo_WM_7:-2:0.739	denovo_WM_7:-52:0.449	denovo_WM_7:-53:0.449
chr2	87754907	87755049	reg1002350.p1	9.395	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-451646	-	BC107767 BC109248 BC070296 BC005379 NM_001032392 M93143 NM_002665 BC022294	-506020	-	CR749330 NM_001024457	-610241	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	39	+	TSC_hg19_v1_chr2_+_87755060 AK312010	82	+	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	292641	+	BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC107767|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC022294|PLGLB2|5342|plasminogen-like B2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1	0.992645	0.0	denovo_WM_7:8:0.291	denovo_WM_7:9:0.584
chr4	26077946	26078097	reg1003054.p1	9.393	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-162157	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-213467	-	NM_001177999 AK314514	-419931	+	L07875 BC020780 NM_005349 NM_203283	243298	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	244288	+	TSC_hg19_v1_chr4_+_26322635 AK302230	244615	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.998153	0.0	denovo_WM_7:10:0.827
chr19	6767560	6767685	reg1002240.p1	9.391	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-115	-	TSC_hg19_v1_chr19_+_6739712 NM_004240 AK313296 AB007845 AB072596 AK223109 AF502289 AJ000414 AY081141 BC013002 CU680464 DQ892747 DQ895993 AF380114 BT006698 BT020167 BT020171 CR536513	-27888	+	TSC_hg19_v1_chr19_-_6737615 BC146909 AX775899 NM_001080452	-30004	-	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	5102	+	TSC_hg19_v1_chr19_+_6772811 AB590871	5186	+	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	119975	+	AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##NM_004240|TRIP10|9322|thyroid hormone receptor interactor 10##AK313296|TRIP10|9322|thyroid hormone receptor interactor 10##AB007845|TRIP10|9322|thyroid hormone receptor interactor 10##AB072596|TRIP10|9322|thyroid hormone receptor interactor 10##AK223109|TRIP10|9322|thyroid hormone receptor interactor 10##AF502289|TRIP10|9322|thyroid hormone receptor interactor 10##AJ000414|TRIP10|9322|thyroid hormone receptor interactor 10##AY081141|TRIP10|9322|thyroid hormone receptor interactor 10##BC013002|TRIP10|9322|thyroid hormone receptor interactor 10##DQ892747|TRIP10|9322|thyroid hormone receptor interactor 10##DQ895993|TRIP10|9322|thyroid hormone receptor interactor 10##AF380114|TRIP10|9322|thyroid hormone receptor interactor 10##BT006698|TRIP10|9322|thyroid hormone receptor interactor 10##BT020167|TRIP10|9322|thyroid hormone receptor interactor 10##BT020171|TRIP10|9322|thyroid hormone receptor interactor 10##CR536513|TRIP10|9322|thyroid hormone receptor interactor 10##BC146909|GPR108|56927|G protein-coupled receptor 108##AX775899|GPR108|56927|G protein-coupled receptor 108##NM_001080452|GPR108|56927|G protein-coupled receptor 108##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1	0.0	0.173317	
chr2	70030277	70030403	reg1002193.p1	9.390	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	-61075	+	BC063672 NM_001153 BC000182 TSC_hg19_v1_chr2_+_69969232 AK293177	-61170	+	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	-159248	-	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	26467	+	TSC_hg19_v1_chr2_+_70056924 AB527982 EU832645 EU832722 CU675651	26631	+	NM_006857 TSC_hg19_v1_chr2_+_70121093 BC017890 X76302 AK291128 AK312041 CU676102	90759	+	BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##BC063672|ANXA4|307|annexin A4##NM_001153|ANXA4|307|annexin A4##BC000182|ANXA4|307|annexin A4##AK293177|ANXA4|307|annexin A4##NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832645|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832722|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_006857|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##BC017890|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##X76302|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK291128|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK312041|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)	0.994747	0.0	denovo_WM_7:-6:0.647	denovo_WM_7:-8:0.206
chr8	142193669	142193849	reg1002228.p2	9.389	+	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	-55022	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	-182503	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-548135	-	AK128212 NM_001080431	44913	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	70431	-	NM_005293	183605	-	NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4##NM_005293|GPR20|2843|G protein-coupled receptor 20	1.982549	0.011891	denovo_WM_7:84:0.819	denovo_WM_7:105:0.950
chr3	122361845	122361958	reg1002009.p1	9.387	+	BC101701 BC101703 BC143573 AK097916 NM_152615	-27409	+	TSC_hg19_v1_chr3_+_122296496 AK309863 NM_001113523 BX647656 DQ063586	-65421	+	AF307338 AF307339 TSC_hg19_v1_chr3_-_122283426 NM_001146103 NM_031458	-78429	-	TSC_hg19_v1_chr3_+_122399703 NM_017554 AK304269	37797	+	CU680100 CU687786 DQ893066 DQ896319 AB590214 AK096705 BC063629 TSC_hg19_v1_chr3_-_122512667 AF400663 BC011897 AK289410 NM_024610	150702	-	TSC_hg19_v1_chr3_+_122513913 NM_032839 AK027690 AK291176 BC039821 BC033738	152015	+	BC101701|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BC101703|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BC143573|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##AK097916|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##NM_152615|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##NM_001113523|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BX647656|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##DQ063586|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##AF307338|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##AF307339|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_001146103|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_031458|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_017554|PARP14|54625|poly (ADP-ribose) polymerase family, member 14##AK304269|PARP14|54625|poly (ADP-ribose) polymerase family, member 14##DQ893066|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##DQ896319|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AK096705|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##BC063629|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AF400663|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##BC011897|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AK289410|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##NM_024610|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##NM_032839|DIRC2|84925|disrupted in renal carcinoma 2##AK027690|DIRC2|84925|disrupted in renal carcinoma 2##AK291176|DIRC2|84925|disrupted in renal carcinoma 2##BC039821|DIRC2|84925|disrupted in renal carcinoma 2##BC033738|DIRC2|84925|disrupted in renal carcinoma 2	1.813966	0.0	denovo_WM_7:-33:0.482	denovo_WM_7:-34:0.307	denovo_WM_7:-50:0.968
chr8	66945953	66946112	reg1002300.p2	9.386	+	NM_033105 BC016742 AF368276 AL133660	-12213	+	TSC_hg19_v1_chr8_-_66754300 AK292680	-191740	-	NM_001242318	-192064	-	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	93308	+	BC002599 BC011031 AK075431 NM_000756	144735	-	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	395274	+	NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AK292680|PDE7A|5150|phosphodiesterase 7A##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.999681	0.0	
chr17	62095979	62096159	reg1002372.p2	9.385	+	NM_000873 TSC_hg19_v1_chr17_-_62084314	-11764	-	AK021786 AK294360 AK302960 AK304254 NM_001164257 NM_001191029 NM_001191030 NM_001191031 BC030709 BC045676	-20307	+	AY212253 M81758 NM_000334	-45831	-	TSC_hg19_v1_chr17_-_62097985 AK295382 AK309953 NM_001099786 NM_001099787 NM_001099788 NM_001099789	1913	-	TSC_hg19_v1_chr17_-_62207401 AB385116 BC130405 BC130407	111329	-	AF059198 AB209869 TSC_hg19_v1_chr17_-_62207502 NM_001433 AK292403	111447	-	NM_000873|ICAM2|3384|intercellular adhesion molecule 2##AK021786|C17orf72|92340|chromosome 17 open reading frame 72##AK294360|C17orf72|92340|chromosome 17 open reading frame 72##AK302960|C17orf72|92340|chromosome 17 open reading frame 72##AK304254|C17orf72|92340|chromosome 17 open reading frame 72##NM_001164257|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191029|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191030|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191031|C17orf72|92340|chromosome 17 open reading frame 72##BC030709|C17orf72|92340|chromosome 17 open reading frame 72##BC045676|C17orf72|92340|chromosome 17 open reading frame 72##AY212253|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##M81758|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##NM_000334|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##AK295382|ICAM2|3384|intercellular adhesion molecule 2##NM_001099786|ICAM2|3384|intercellular adhesion molecule 2##NM_001099787|ICAM2|3384|intercellular adhesion molecule 2##NM_001099788|ICAM2|3384|intercellular adhesion molecule 2##NM_001099789|ICAM2|3384|intercellular adhesion molecule 2##BC130405|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130407|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AF059198|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AB209869|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##NM_001433|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK292403|ERN1|2081|endoplasmic reticulum to nucleus signaling 1	1.619529	0.0	denovo_WM_7:7:0.453	denovo_WM_7:22:0.258	denovo_WM_7:23:0.407
chr5	10630932	10631088	reg1002168.p2	9.382	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-66568	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-188858	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-189007	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	130249	-	TSC_hg19_v1_chr5_-_10761341 BC002726	130332	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	130389	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.99674	0.0	denovo_WM_7:-18:0.449	denovo_WM_7:-19:0.449
chr17	74511928	74512065	reg1002215.p2	9.381	+	TSC_hg19_v1_chr17_-_74497506 BC016034 AK292135 NM_024599	-14537	-	AK303434 AY500247 AK292166 NM_001005498	-28098	-	NM_001088 U40347 AB593119 BC069434	-48339	+	AJ315162 AK098057 BC029798 AB057769 BC018822 NM_134268	21706	-	DQ390338 NM_001077620 BC146898 BC146904	24150	+	TSC_hg19_v1_chr17_+_74553850 AK123993 AK129904 AB073602 BC042949 AK055935 BX647993 BC100293	41883	+	BC016034|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292135|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_024599|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK303434|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AY500247|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292166|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001005498|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001088|AANAT|15|aralkylamine N-acetyltransferase##U40347|AANAT|15|aralkylamine N-acetyltransferase##AB593119|AANAT|15|aralkylamine N-acetyltransferase##BC069434|AANAT|15|aralkylamine N-acetyltransferase##AJ315162|CYGB|114757|cytoglobin##AK098057|CYGB|114757|cytoglobin##BC029798|CYGB|114757|cytoglobin##AB057769|CYGB|114757|cytoglobin##NM_134268|CYGB|114757|cytoglobin##DQ390338|PRCD|768206|progressive rod-cone degeneration##NM_001077620|PRCD|768206|progressive rod-cone degeneration##BC146898|PRCD|768206|progressive rod-cone degeneration##BC146904|PRCD|768206|progressive rod-cone degeneration##BC042949|LOC100507246|100507246|uncharacterized LOC100507246##BX647993|LOC100507246|100507246|uncharacterized LOC100507246##BC100293|LOC100507246|100507246|uncharacterized LOC100507246	0.986853	0.0	denovo_WM_7:28:0.476	denovo_WM_7:29:0.476
chr3	150421855	150422014	reg1001928.p1	9.380	+	AK093375 AX748085 BC036239 BC029577 NM_152394	-205	-	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	-100779	+	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	-100958	-	TSC_hg19_v1_chr3_-_150480902 AK223565	58965	-	TSC_hg19_v1_chr3_-_150480936 BC013082	58996	-	TSC_hg19_v1_chr3_-_150481278 U76248 NM_005067	59188	-	AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A##NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK223565|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##BC013082|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##U76248|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##NM_005067|SIAH2|6478|seven in absentia homolog 2 (Drosophila)	0.994824	0.0	denovo_WM_7:48:0.736
chr16	15753172	15753317	reg1003163.p1	9.378	+	NM_017668 BC001421 TSC_hg19_v1_chr16_+_15744101 AK000108 AK025815	-9137	+	BC033900 NM_001143979	-16121	+	BC137165 BC137170 BC144514 BC144515 TSC_hg19_v1_chr16_-_15737004 AK302667 AK095840 BC064914 NM_001184998 NM_001184999 NM_014647	-16251	-	BX641087 TSC_hg19_v1_chr16_-_15833973	80711	-	TSC_hg19_v1_chr16_-_15835382 D10667	82203	-	BC101677 BC104906 BC143364 AB020673 AY520816 AY520817 TSC_hg19_v1_chr16_-_15950886 AK308389 BC031040 EU489063 NM_001040113 NM_001040114 NM_002474 NM_022844	197625	-	NM_017668|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC001421|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK000108|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK025815|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC033900|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##NM_001143979|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC137165|KIAA0430|9665|KIAA0430##BC137170|KIAA0430|9665|KIAA0430##BC144514|KIAA0430|9665|KIAA0430##BC144515|KIAA0430|9665|KIAA0430##AK302667|KIAA0430|9665|KIAA0430##AK095840|KIAA0430|9665|KIAA0430##BC064914|KIAA0430|9665|KIAA0430##NM_001184998|KIAA0430|9665|KIAA0430##NM_001184999|KIAA0430|9665|KIAA0430##NM_014647|KIAA0430|9665|KIAA0430##BX641087|MYH11|4629|myosin, heavy chain 11, smooth muscle##D10667|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC101677|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC104906|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC143364|MYH11|4629|myosin, heavy chain 11, smooth muscle##AB020673|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520816|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520817|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK308389|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC031040|MYH11|4629|myosin, heavy chain 11, smooth muscle##EU489063|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040113|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040114|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_002474|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_022844|MYH11|4629|myosin, heavy chain 11, smooth muscle	1.993503	0.0	denovo_WM_7:43:0.275	denovo_WM_7:44:0.712	denovo_WM_7:59:0.847
chr15	90830052	90830145	reg1002229.p1	9.376	+	TSC_hg19_v1_chr15_+_90808921 AB029315 NM_001033088 AL834503 BC007222 AL360142 AK312641 BC017192 BC019023 AF242770 AL355700 BC009389 BC096824 AF225423	-21178	+	TSC_hg19_v1_chr15_+_90792763 BC036668 NM_001029964 AK127965 BC052201	-37323	+	TSC_hg19_v1_chr15_+_90777469 BC127821 NM_001013657	-52624	+	AK289385 NM_001004309 BC067279 CR749343	65425	+	BC151834 D29640 TSC_hg19_v1_chr15_+_90931449	101356	+	TSC_hg19_v1_chr15_+_90931479 NM_003870	101379	+	AB029315|NGRN|51335|neugrin, neurite outgrowth associated##NM_001033088|NGRN|51335|neugrin, neurite outgrowth associated##AL834503|NGRN|51335|neugrin, neurite outgrowth associated##BC007222|NGRN|51335|neugrin, neurite outgrowth associated##AL360142|NGRN|51335|neugrin, neurite outgrowth associated##AK312641|NGRN|51335|neugrin, neurite outgrowth associated##BC017192|NGRN|51335|neugrin, neurite outgrowth associated##BC019023|NGRN|51335|neugrin, neurite outgrowth associated##AF242770|NGRN|51335|neugrin, neurite outgrowth associated##AL355700|NGRN|51335|neugrin, neurite outgrowth associated##BC009389|NGRN|51335|neugrin, neurite outgrowth associated##BC096824|NGRN|51335|neugrin, neurite outgrowth associated##AF225423|NGRN|51335|neugrin, neurite outgrowth associated##BC036668|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##NM_001029964|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##AK127965|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##BC127821|C15orf58|390637|chromosome 15 open reading frame 58##NM_001013657|C15orf58|390637|chromosome 15 open reading frame 58##AK289385|ZNF774|342132|zinc finger protein 774##NM_001004309|ZNF774|342132|zinc finger protein 774##BC067279|ZNF774|342132|zinc finger protein 774##CR749343|ZNF774|342132|zinc finger protein 774##BC151834|IQGAP1|8826|IQ motif containing GTPase activating protein 1##D29640|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_003870|IQGAP1|8826|IQ motif containing GTPase activating protein 1	1.340593	0.010693	denovo_WM_7:47:0.452
chr17	42323999	42324122	reg1002961.p1	9.376	+	BC050302 TSC_hg19_v1_chr17_+_42299409	-24715	+	AK292577 TSC_hg19_v1_chr17_-_42298971 AK292518	-25123	-	TSC_hg19_v1_chr17_-_42298282 BC042297 NM_001076683	-25781	-	BC101574 BC101570 M27819 NM_000342 X12609 TSC_hg19_v1_chr17_-_42345504	21409	-	AL133657 NM_001144825 NM_001144826 NM_006695 TSC_hg19_v1_chr17_+_42385950 AB209802 AK226045 BC006194 AK313669 BX537443 AF055026 CR456748 CU675291 U93871	61930	+	TSC_hg19_v1_chr17_-_42402172 BC096819 BC009330 AK026060 AL133584 BC001398 AK289357 AK295478 AK301139	78106	-	AK292577|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292518|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC042297|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076683|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC101574|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##BC101570|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##M27819|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##NM_000342|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##X12609|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##AL133657|RUNDC3A|10900|RUN domain containing 3A##NM_001144825|RUNDC3A|10900|RUN domain containing 3A##NM_001144826|RUNDC3A|10900|RUN domain containing 3A##NM_006695|RUNDC3A|10900|RUN domain containing 3A##AB209802|RUNDC3A|10900|RUN domain containing 3A##AK226045|RUNDC3A|10900|RUN domain containing 3A##BC006194|RUNDC3A|10900|RUN domain containing 3A##AK313669|RUNDC3A|10900|RUN domain containing 3A##BX537443|RUNDC3A|10900|RUN domain containing 3A##AF055026|RUNDC3A|10900|RUN domain containing 3A##CR456748|RUNDC3A|10900|RUN domain containing 3A##U93871|RUNDC3A|10900|RUN domain containing 3A##BC096819|SLC25A39|51629|solute carrier family 25, member 39##BC009330|SLC25A39|51629|solute carrier family 25, member 39##AK026060|SLC25A39|51629|solute carrier family 25, member 39##AL133584|SLC25A39|51629|solute carrier family 25, member 39##BC001398|SLC25A39|51629|solute carrier family 25, member 39##AK289357|SLC25A39|51629|solute carrier family 25, member 39##AK295478|SLC25A39|51629|solute carrier family 25, member 39##AK301139|SLC25A39|51629|solute carrier family 25, member 39	0.984593	0.0	
chr2	170655726	170655906	reg1002423.p2	9.373	+	NM_003142 TSC_hg19_v1_chr2_+_170655388 BC020818 D28394 J04205 BC001289 DQ185046 X13697	-400	+	TSC_hg19_v1_chr2_+_170590477 BC010437	-65329	+	TSC_hg19_v1_chr2_+_170590371 NM_144711 AX721220	-65481	+	TSC_hg19_v1_chr2_+_170662051 M20328 M35261	6328	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	25569	-	TSC_hg19_v1_chr2_+_170683963 NM_172070	28142	+	NM_003142|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC020818|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##D28394|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##J04205|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC001289|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##DQ185046|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##X13697|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC010437|KLHL23|151230|kelch-like 23 (Drosophila)##NM_144711|KLHL23|151230|kelch-like 23 (Drosophila)##M20328|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M35261|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)	0.995693	0.0	
chr3	196172392	196172507	reg1002707.p2	9.372	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-13116	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-13150	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-13166	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	58129	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	69764	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	122941	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.992494	0.219673	CTCF.p2:3:0.220
chr14	97859559	97859721	reg1002710.p1	9.370	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-595925	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-890856	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-890894	+	AK098639 NM_182560	1318309	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1877977	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1878250	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.995521	0.0	denovo_WM_7:-22:0.202	denovo_WM_7:-23:0.776
chr15	31633659	31633839	reg1002492.p2	9.367	+	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	-14411	+	NM_001243538	-110700	-	GQ502181 HM135791 NM_001252020	-180321	-	AJ430383 NM_130901	313792	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	529080	-	TSC_hg19_v1_chr15_-_32162898 AK126002	529194	-	AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##AK126002|OTUD7A|161725|OTU domain containing 7A	1.9965	0.0	denovo_WM_7:0:0.314	denovo_WM_7:0:0.314	denovo_WM_7:1:0.314	denovo_WM_7:-36:0.817
chr2	131902813	131902966	reg1003149.p1	9.367	+	TSC_hg19_v1_chr2_+_131862905 AK000790 AK223338 AK293880 AK296008 BC050695 BC001428 BC013991	-39980	+	TSC_hg19_v1_chr2_+_131862874 AK302770	-40018	+	AK126289 NM_001100623 NM_017958	-40470	+	AY462868 AY462871 AY462872 AY462873 NM_001083538 AB464428	73060	+	NM_001077637	218841	-	NM_080386 AK093116 AX747933 AK292253 BC057810	330747	+	AK000790|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK223338|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK293880|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK296008|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##BC050695|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##BC001428|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##BC013991|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK302770|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK126289|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_001100623|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_017958|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AY462868|POTEE|445582|POTE ankyrin domain family, member E##AY462871|POTEE|445582|POTE ankyrin domain family, member E##AY462872|POTEE|445582|POTE ankyrin domain family, member E##AY462873|POTEE|445582|POTE ankyrin domain family, member E##NM_001083538|POTEE|445582|POTE ankyrin domain family, member E##NM_001077637|WTH3DI|150786|RAB6C-like##NM_080386|TUBA3D|113457|tubulin, alpha 3d##AK093116|TUBA3D|113457|tubulin, alpha 3d##AK292253|TUBA3D|113457|tubulin, alpha 3d##BC057810|TUBA3D|113457|tubulin, alpha 3d	0.960775	0.0	denovo_WM_7:22:0.642
chr7	107910879	107911053	reg1002704.p2	9.366	+	AJ001057 AB385311 NM_001037132	-30414	-	BC142619 BC140804 BC144591 AF028816 AK300385 NM_007356	-140174	-	AB384752 TSC_hg19_v1_chr7_-_107643594 BC113455 M61916 BX648251 AK303501 AK309921 AK307611 BC044633 BC052598 NM_002291	-267361	-	TSC_hg19_v1_chr7_-_108096830 BC114570 BC115736 AB002341 BX538010 AK299870 BC098401 NM_001193582 NM_001193583 NM_001193584 NM_005010	185963	-	TSC_hg19_v1_chr7_-_108142934 BC005203 AK002115	232006	-	AL834147 TSC_hg19_v1_chr7_-_108166546	255567	-	AJ001057|NRCAM|4897|neuronal cell adhesion molecule##NM_001037132|NRCAM|4897|neuronal cell adhesion molecule##BC142619|LAMB4|22798|laminin, beta 4##BC140804|LAMB4|22798|laminin, beta 4##BC144591|LAMB4|22798|laminin, beta 4##AF028816|LAMB4|22798|laminin, beta 4##AK300385|LAMB4|22798|laminin, beta 4##NM_007356|LAMB4|22798|laminin, beta 4##BC113455|LAMB1|3912|laminin, beta 1##M61916|LAMB1|3912|laminin, beta 1##BX648251|LAMB1|3912|laminin, beta 1##AK303501|LAMB1|3912|laminin, beta 1##AK309921|LAMB1|3912|laminin, beta 1##AK307611|LAMB1|3912|laminin, beta 1##BC044633|LAMB1|3912|laminin, beta 1##BC052598|LAMB1|3912|laminin, beta 1##NM_002291|LAMB1|3912|laminin, beta 1##BC114570|NRCAM|4897|neuronal cell adhesion molecule##BC115736|NRCAM|4897|neuronal cell adhesion molecule##AB002341|NRCAM|4897|neuronal cell adhesion molecule##BX538010|NRCAM|4897|neuronal cell adhesion molecule##AK299870|NRCAM|4897|neuronal cell adhesion molecule##BC098401|NRCAM|4897|neuronal cell adhesion molecule##NM_001193582|NRCAM|4897|neuronal cell adhesion molecule##NM_001193583|NRCAM|4897|neuronal cell adhesion molecule##NM_001193584|NRCAM|4897|neuronal cell adhesion molecule##NM_005010|NRCAM|4897|neuronal cell adhesion molecule##BC005203|PNPLA8|50640|patatin-like phospholipase domain containing 8##AK002115|PNPLA8|50640|patatin-like phospholipase domain containing 8##AL834147|PNPLA8|50640|patatin-like phospholipase domain containing 8	0.0	0.0	
chr1	114402503	114402683	reg1001183.p5	9.365	+	TSC_hg19_v1_chr1_-_114354906 AK002082 BC026155 NM_018364 AK292552	-47592	-	TSC_hg19_v1_chr1_-_114354898 CU693140 CR627402	-47712	-	TSC_hg19_v1_chr1_-_114302096 BC002447	-100453	-	AB587398 JN084012 AF001846 AF001847 GU479452 AF150732 AF077031 BC071670 AK303124 TSC_hg19_v1_chr1_-_114414332 AK310570 AK310698 BC017785 NM_001193431 NM_012411 NM_015967	11716	-	AY265861 AY265862 AY265863 AY265864 BC127719 BC127720 TSC_hg19_v1_chr1_-_114430038 BC132904 BC132906 CR749373	27445	-	NM_001010922 TSC_hg19_v1_chr1_-_114430204 AK289439	27593	-	AK002082|RSBN1|54665|round spermatid basic protein 1##BC026155|RSBN1|54665|round spermatid basic protein 1##NM_018364|RSBN1|54665|round spermatid basic protein 1##AK292552|RSBN1|54665|round spermatid basic protein 1##CR627402|RSBN1|54665|round spermatid basic protein 1##BC002447|PHTF1|10745|putative homeodomain transcription factor 1##JN084012|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF001846|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##GU479452|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF150732|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF077031|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC071670|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK303124|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310570|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310698|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC017785|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_001193431|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_012411|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_015967|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AY265861|BCL2L15|440603|BCL2-like 15##AY265862|BCL2L15|440603|BCL2-like 15##AY265863|BCL2L15|440603|BCL2-like 15##AY265864|BCL2L15|440603|BCL2-like 15##BC127719|BCL2L15|440603|BCL2-like 15##BC127720|BCL2L15|440603|BCL2-like 15##BC132904|BCL2L15|440603|BCL2-like 15##BC132906|BCL2L15|440603|BCL2-like 15##CR749373|BCL2L15|440603|BCL2-like 15##NM_001010922|BCL2L15|440603|BCL2-like 15##AK289439|BCL2L15|440603|BCL2-like 15	0.999414	0.0	
chr6_cox_hap2	148196	148311	reg1002438.p1	9.365	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.99407	0.0	denovo_WM_7:70:0.459	denovo_WM_7:71:0.459
chr5	126098196	126098376	reg1002533.p1	9.364	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-130871	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-161654	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-167430	-	NM_005573 BC052951	14029	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	14545	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	14596	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	1.892067	0.0	denovo_WM_7:32:0.905	denovo_WM_7:47:0.842
chr11	45960304	45960409	reg1002260.p1	9.363	+	TSC_hg19_v1_chr11_+_45944226 BC037291	-16140	+	AK055829 AK096021 NM_152312	-17173	+	TSC_hg19_v1_chr11_-_45939595 AF118240 NM_004813 NM_057174	-20736	-	TSC_hg19_v1_chr11_-_46142986 AK023258 NM_001101802 NM_016621	182641	-	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	338849	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	339204	+	BC037291|GYLTL1B|120071|glycosyltransferase-like 1B##AK055829|GYLTL1B|120071|glycosyltransferase-like 1B##AK096021|GYLTL1B|120071|glycosyltransferase-like 1B##NM_152312|GYLTL1B|120071|glycosyltransferase-like 1B##AF118240|PEX16|9409|peroxisomal biogenesis factor 16##NM_004813|PEX16|9409|peroxisomal biogenesis factor 16##NM_057174|PEX16|9409|peroxisomal biogenesis factor 16##AK023258|PHF21A|51317|PHD finger protein 21A##NM_001101802|PHF21A|51317|PHD finger protein 21A##NM_016621|PHF21A|51317|PHD finger protein 21A##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1	1.239954	0.0	denovo_WM_7:38:0.819	denovo_WM_7:-70:0.200
chr20	51486613	51486744	reg1003543.p1	9.356	+	BC012759 BC041622 NM_018197 NM_022088 NM_199426 NM_199427	-678155	-	BT009760 AB527686 BC021087 AK001744 TSC_hg19_v1_chr20_-_50808313 AK090547 BC031524 AK001596 AK222712	-678423	-	AY170621 AY170622 AY172738 BC111714 AK001666 NM_020436	-1067682	-	BX640770 NM_173485	102267	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	103100	+	AK302570 NM_001193421	315143	+	BC012759|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC041622|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_018197|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_022088|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199426|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199427|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BT009760|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC021087|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK001744|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK090547|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC031524|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK001596|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK222712|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AY170621|SALL4|57167|sal-like 4 (Drosophila)##AY170622|SALL4|57167|sal-like 4 (Drosophila)##AY172738|SALL4|57167|sal-like 4 (Drosophila)##BC111714|SALL4|57167|sal-like 4 (Drosophila)##AK001666|SALL4|57167|sal-like 4 (Drosophila)##NM_020436|SALL4|57167|sal-like 4 (Drosophila)##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2	0.983639	0.0	denovo_WM_7:-15:0.268	denovo_WM_7:-16:0.337	denovo_WM_7:-17:0.350
chr17	47419790	47419929	reg1002520.p1	9.355	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-111716	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-131782	+	NM_001198754	-131924	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	19721	-	BC095460 TSC_hg19_v1_chr17_-_47492215	72356	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	72389	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	0.0	0.0	
chr15	93443418	93443484	reg1001689.p2	9.354	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-166062	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-244572	-	AK057393 NM_153040	-428545	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	35	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	129	+	AK295909 TSC_hg19_v1_chr15_+_93447798	4309	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	0.995937	0.0	denovo_WM_7:11:0.922
chr1	8457600	8457743	reg1002734.p2	9.354	+	NM_001080397	-73282	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-371273	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-371310	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	26346	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	419921	-	GU170215 NM_001201483	473963	-	NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)	0.997258	0.0	denovo_WM_7:-14:0.907
chr15	75063540	75063682	reg1002898.p1	9.353	+	TSC_hg19_v1_chr15_+_75041185 NM_000761 BC067424 BC067425 BC067426 BC067427 BC067428 BC067429	-22419	+	AK310810 AM233517 AM233518 AM233519 AM233520 AM236046 AM236047 BC023019 AY871801 K03191 AK223108 AK223113 AK313880 NM_000499	-45818	-	TSC_hg19_v1_chr15_-_74988360 BC011534 BC021271 AK056339 NM_001142443 NM_001142444 NM_025083	-75248	-	TSC_hg19_v1_chr15_+_75074420 BC106073 NM_001127190 NM_004383 AK290531	10814	+	X60114 TSC_hg19_v1_chr15_+_75074849 AK298245 AK223626 AK310136 AK312669 BC104847 BC104875 X59932	11245	+	AK300517 AK294807 AK309976 AK291819 AY358724 NM_021819	41561	+	NM_000761|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067424|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067425|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067426|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067427|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067428|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067429|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##AK310810|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233517|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233518|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233519|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233520|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM236046|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM236047|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##BC023019|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AY871801|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##K03191|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AK223108|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AK223113|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AK313880|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##NM_000499|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##BC011534|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##BC021271|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##AK056339|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##NM_001142443|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##NM_001142444|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##NM_025083|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##BC106073|CSK|1445|c-src tyrosine kinase##NM_001127190|CSK|1445|c-src tyrosine kinase##NM_004383|CSK|1445|c-src tyrosine kinase##AK290531|CSK|1445|c-src tyrosine kinase##X60114|CSK|1445|c-src tyrosine kinase##AK298245|CSK|1445|c-src tyrosine kinase##AK223626|CSK|1445|c-src tyrosine kinase##AK310136|CSK|1445|c-src tyrosine kinase##AK312669|CSK|1445|c-src tyrosine kinase##BC104847|CSK|1445|c-src tyrosine kinase##BC104875|CSK|1445|c-src tyrosine kinase##X59932|CSK|1445|c-src tyrosine kinase##AK300517|LMAN1L|79748|lectin, mannose-binding, 1 like##AK294807|LMAN1L|79748|lectin, mannose-binding, 1 like##AK309976|LMAN1L|79748|lectin, mannose-binding, 1 like##AK291819|LMAN1L|79748|lectin, mannose-binding, 1 like##AY358724|LMAN1L|79748|lectin, mannose-binding, 1 like##NM_021819|LMAN1L|79748|lectin, mannose-binding, 1 like	0.884046	0.975194	CTCF.p2:-26:0.975	denovo_WM_7:54:0.852
chr1	12113199	12113358	reg1002615.p2	9.352	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-33708	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-33744	+	FJ618905 NM_021933	-33980	+	M83554 NM_001243 BC136400 BC171762 S75768	10266	+	D86042 BC063482 NM_152942 BC073839 BC141804	72738	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	113783	+	AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##FJ618905|MIIP|60672|migration and invasion inhibitory protein##NM_021933|MIIP|60672|migration and invasion inhibitory protein##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	1.896523	0.0	denovo_WM_7:30:0.678	denovo_WM_7:45:0.879
chr15	92704358	92704505	reg1002776.p1	9.352	+	TSC_hg19_v1_chr15_+_92397563 AK097797 AK310306	-306864	+	TSC_hg19_v1_chr15_+_92397119 BC000585 AK290872 AF187816 CU674284 DQ891954 DQ895140	-307334	+	TSC_hg19_v1_chr15_+_92396937 NM_001145044 NM_013272 AB031050 AF205074	-307488	+	TSC_hg19_v1_chr15_+_92937110 NM_006011 AK313924 BC069584 BC096202 BC096203 BC096204 BC096205 U82762 U33551	232768	+	AK057393 NM_153040	310475	+	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	494448	-	AK097797|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AK310306|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##BC000585|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AK290872|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AF187816|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##DQ891954|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##DQ895140|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##NM_001145044|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##NM_013272|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AB031050|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AF205074|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##NM_006011|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK313924|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC069584|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096202|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096203|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096204|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096205|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U82762|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U33551|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B	0.0	0.011087	
chr10	32597259	32597385	reg1002480.p1	9.351	+	TSC_hg19_v1_chr10_-_32345341 NM_004521	-251962	-	TSC_hg19_v1_chr10_-_32345335 BC080604 BC010885 BC111042 AK289413 AK299542 BC065267 AK307502	-252008	-	BC126279 BC126281 TSC_hg19_v1_chr10_-_32345152 X65873	-252154	-	CU691366 TSC_hg19_v1_chr10_-_32636082 AK092304 AX747467 AK309822	38640	-	TSC_hg19_v1_chr10_-_32636116 AF277374 FJ230887 NM_025209	38786	-	TSC_hg19_v1_chr10_-_32636137 BC036529 CR749375	38827	-	NM_004521|KIF5B|3799|kinesin family member 5B##BC080604|KIF5B|3799|kinesin family member 5B##BC010885|KIF5B|3799|kinesin family member 5B##BC111042|KIF5B|3799|kinesin family member 5B##AK289413|KIF5B|3799|kinesin family member 5B##AK299542|KIF5B|3799|kinesin family member 5B##BC065267|KIF5B|3799|kinesin family member 5B##AK307502|KIF5B|3799|kinesin family member 5B##BC126279|KIF5B|3799|kinesin family member 5B##BC126281|KIF5B|3799|kinesin family member 5B##X65873|KIF5B|3799|kinesin family member 5B##AK092304|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309822|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF277374|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_025209|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##BC036529|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##CR749375|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)	0.07872	0.0	
chr12	11887919	11888099	reg1002660.p2	9.349	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	-85023	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	-85235	+	TSC_hg19_v1_chr12_+_11802659 AK289441	-85336	+	AK292995 TSC_hg19_v1_chr12_+_12223872 BC025778 NM_138723 AK223415	335874	+	AF281254 AF281255 NM_030766 NM_138722	336392	+	AK074543 TSC_hg19_v1_chr12_-_12291395	403375	-	U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##AK289441|ETV6|2120|ets variant 6##AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281254|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281255|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_030766|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138722|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK074543|LRP6|4040|low density lipoprotein receptor-related protein 6	1.160887	0.0	
chr16	14595268	14595448	reg1002382.p1	9.346	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-301160	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-314840	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-430272	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	128670	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	128775	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	131381	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	1.440421	0.0	denovo_WM_7:-40:0.213	denovo_WM_7:-41:0.203	denovo_WM_7:-56:0.225	denovo_WM_7:-57:0.240
chr20	52209295	52209449	reg1002209.p1	9.344	+	AF041259 NM_006526	-9737	-	AK302570 NM_001193421	-407551	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-619594	+	TSC_hg19_v1_chr20_-_52210810 AK290350	1427	-	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	477690	-	AK315220 NM_003657	477931	-	AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##AK290350|ZNF217|7764|zinc finger protein 217##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1	1.991457	0.0	denovo_WM_7:11:0.740	denovo_WM_7:27:0.975
chr17	3814556	3814721	reg1002165.p2	9.339	+	AL136576 NM_032294 NM_172207 TSC_hg19_v1_chr17_-_3796348	-18295	-	BC031647 TSC_hg19_v1_chr17_-_3796278 AF425232 BC043487	-18347	-	AF425301 NM_172206	-20602	-	X83688 U45448 BC044657 BC027949 TSC_hg19_v1_chr17_-_3819762 AK310981 AK313264 AF020498	5110	-	NM_002558	5321	-	AB462957 DQ893317 EU176809 Z69881 TSC_hg19_v1_chr17_-_3867744 AF068220 BC035729 AK292716 NM_005173 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958	53063	-	AL136576|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_032294|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172207|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC031647|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AF425232|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC043487|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AF425301|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172206|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##X83688|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##U45448|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC044657|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC027949|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AK313264|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AF020498|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##NM_002558|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##DQ893317|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##EU176809|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##Z69881|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AF068220|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##BC035729|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AK292716|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_005173|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174953|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174954|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174955|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174956|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174957|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174958|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous	1.176281	0.0	denovo_WM_7:-30:0.525	denovo_WM_7:-45:0.272
chr17	4920184	4920364	reg1002074.p1	9.339	+	TSC_hg19_v1_chr17_+_4901226 NM_006612 AB014606 BC034993 AK307401	-18964	+	AY601906 AY601907 NM_001167985 NM_001167986 NM_001167987 NM_213726	-19370	-	AB020716 BC167148 BC167149 BC167151 BC167160 EU832136 EU832229 TSC_hg19_v1_chr17_-_4890947 AK302528 AL833974 BC142695 NM_001171166 NM_015099	-29322	-	AB362534 AK023570 AB362533 BC060810 NM_001104577 NM_017986	18438	-	TSC_hg19_v1_chr17_+_4981751 AK055288 NM_153018	61463	+	TSC_hg19_v1_chr17_+_4981774 AK290549 BC142962 BX647638	61511	+	NM_006612|KIF1C|10749|kinesin family member 1C##AB014606|KIF1C|10749|kinesin family member 1C##BC034993|KIF1C|10749|kinesin family member 1C##AK307401|KIF1C|10749|kinesin family member 1C##AY601906|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AY601907|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167985|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167986|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167987|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_213726|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AB020716|CAMTA2|23125|calmodulin binding transcription activator 2##BC167148|CAMTA2|23125|calmodulin binding transcription activator 2##BC167149|CAMTA2|23125|calmodulin binding transcription activator 2##BC167151|CAMTA2|23125|calmodulin binding transcription activator 2##BC167160|CAMTA2|23125|calmodulin binding transcription activator 2##EU832136|CAMTA2|23125|calmodulin binding transcription activator 2##EU832229|CAMTA2|23125|calmodulin binding transcription activator 2##AK302528|CAMTA2|23125|calmodulin binding transcription activator 2##AL833974|CAMTA2|23125|calmodulin binding transcription activator 2##BC142695|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171166|CAMTA2|23125|calmodulin binding transcription activator 2##NM_015099|CAMTA2|23125|calmodulin binding transcription activator 2##AB362534|GPR172B|55065|G protein-coupled receptor 172B##AK023570|GPR172B|55065|G protein-coupled receptor 172B##AB362533|GPR172B|55065|G protein-coupled receptor 172B##BC060810|GPR172B|55065|G protein-coupled receptor 172B##NM_001104577|GPR172B|55065|G protein-coupled receptor 172B##NM_017986|GPR172B|55065|G protein-coupled receptor 172B##AK055288|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_153018|ZFP3|124961|zinc finger protein 3 homolog (mouse)##AK290549|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BC142962|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BX647638|ZFP3|124961|zinc finger protein 3 homolog (mouse)	0.999093	0.0	denovo_WM_7:-65:0.310	denovo_WM_7:-66:0.310	denovo_WM_7:-67:0.310
chr15	101474942	101475087	reg1002542.p2	9.338	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-15502	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-15540	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-54943	+	AB071402 TSC_hg19_v1_chr15_-_101791795	316722	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	317121	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	342649	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.998449	0.0	
chr12	65013030	65013189	reg1003286.p1	9.337	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-8848	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-167216	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-209331	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	139988	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	140050	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	140075	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.103656	0.0	
chr5	130602068	130602248	reg1002687.p1	9.337	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-2358	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-2390	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-2402	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	368599	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	368661	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	368720	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	1.079015	0.0	denovo_WM_7:3:0.388	denovo_WM_7:4:0.388
chr1	16231065	16231202	reg1002545.p1	9.335	+	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	-56754	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-68777	-	BC012991 TSC_hg19_v1_chr1_-_16161389	-69799	-	TSC_hg19_v1_chr1_+_16259065 BC172907	27978	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	71337	-	AK127425 BC017946 NM_178840 CU676116	99630	+	AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##AK094772|FLJ37453|729614|uncharacterized LOC729614##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17##AK127425|C1orf64|149563|chromosome 1 open reading frame 64##BC017946|C1orf64|149563|chromosome 1 open reading frame 64##NM_178840|C1orf64|149563|chromosome 1 open reading frame 64	0.99857	0.0	denovo_WM_7:18:0.494	denovo_WM_7:19:0.494
chr15	29562232	29562377	reg1002563.p1	9.334	+	TSC_hg19_v1_chr15_-_29562011 AK056957 AF490510 NM_138704	-275	-	TSC_hg19_v1_chr15_-_29561989 BC041166 BC053999 BC035458	-334	-	NM_001130414 NM_005503 AF047348 BC082986	-348455	+	NM_015307	300622	-	AK304758 TSC_hg19_v1_chr15_-_30114336	552038	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	552319	-	AK056957|NDNL2|56160|necdin-like 2##AF490510|NDNL2|56160|necdin-like 2##NM_138704|NDNL2|56160|necdin-like 2##BC041166|NDNL2|56160|necdin-like 2##BC053999|NDNL2|56160|necdin-like 2##BC035458|NDNL2|56160|necdin-like 2##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)	0.702795	0.0	denovo_WM_7:30:0.679
chr10	111898068	111898204	reg1003411.p1	9.332	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-130169	+	TSC_hg19_v1_chr10_+_111767741 BX647403 NM_001121 NM_016824 BC062559 BX648016	-130407	+	NM_019903 AB209810 BC057285	-132355	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	69223	+	BC012907 NM_001008541	71852	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	87685	+	AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##BX647403|ADD3|120|adducin 3 (gamma)##NM_001121|ADD3|120|adducin 3 (gamma)##NM_016824|ADD3|120|adducin 3 (gamma)##BC062559|ADD3|120|adducin 3 (gamma)##BX648016|ADD3|120|adducin 3 (gamma)##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1	0.0	0.520316	CTCF.p2:23:0.520
chr6	4802885	4803018	reg1002727.p2	9.332	+	TSC_hg19_v1_chr6_+_4776889 BC119682	-26030	+	TSC_hg19_v1_chr6_+_4776647 AK291601 BC108725 NM_004824	-26291	+	TSC_hg19_v1_chr6_+_4136242 AK092451	-666678	+	AK296985 NM_001143970	33380	+	BC043397 NM_001143971	87274	+	TSC_hg19_v1_chr6_+_5004043 AK094934	201075	+	BC119682|CDYL|9425|chromodomain protein, Y-like##AK291601|CDYL|9425|chromodomain protein, Y-like##BC108725|CDYL|9425|chromodomain protein, Y-like##NM_004824|CDYL|9425|chromodomain protein, Y-like##AK092451|LOC100507506|100507506|uncharacterized LOC100507506##AK296985|CDYL|9425|chromodomain protein, Y-like##NM_001143970|CDYL|9425|chromodomain protein, Y-like##BC043397|CDYL|9425|chromodomain protein, Y-like##NM_001143971|CDYL|9425|chromodomain protein, Y-like##AK094934|LOC285778|285778|uncharacterized LOC285778	0.880633	0.0	denovo_WM_7:17:0.342	denovo_WM_7:18:0.413
chr6	130349146	130349289	reg1002640.p1	9.330	+	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	-9492	+	NM_001010876	-166802	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	-317891	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	187238	-	AK091882 AX747235 NM_001017373	194881	-	AB052099 NM_052913	409044	+	AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A	0.995056	0.0	denovo_WM_7:8:0.738
chr3	72924789	72924890	reg1002335.p1	9.329	+	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	-27247	-	BC017274 TSC_hg19_v1_chr3_-_72897575	-27264	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	-27291	-	TSC_hg19_v1_chr3_+_72937356 NM_001080393	12437	+	TSC_hg19_v1_chr3_+_73045961 AK289901 BC100281	121118	+	TSC_hg19_v1_chr3_+_73045984 BC110889	121152	+	BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_001080393|GXYLT2|727936|glucoside xylosyltransferase 2##AK289901|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC100281|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2	0.994704	0.0	denovo_WM_7:-44:0.554
chr4	71615183	71615295	reg1001957.p1	9.329	+	TSC_hg19_v1_chr4_+_71587713 NM_001037442 NM_014961 BC051716 BC053837 BC098433 AB020678 BC071988	-27519	+	BC030809 TSC_hg19_v1_chr4_-_71571018	-44241	-	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	-44420	+	AK094806 NM_001098477	89964	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	90338	-	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	90398	-	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3##NM_014961|RUFY3|22902|RUN and FYVE domain containing 3##BC051716|RUFY3|22902|RUN and FYVE domain containing 3##BC053837|RUFY3|22902|RUN and FYVE domain containing 3##BC098433|RUFY3|22902|RUN and FYVE domain containing 3##AB020678|RUFY3|22902|RUN and FYVE domain containing 3##BC071988|RUFY3|22902|RUN and FYVE domain containing 3##BC030809|LOC641510|641510|uncharacterized LOC641510##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1	0.997331	0.0	denovo_WM_7:9:0.985
chr14	69149606	69149786	reg1001549.p1	9.327	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-863176	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-866397	-	AK315462 NM_152443	-981094	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	110024	-	NM_001244698 NM_004926	110934	-	NM_001244701 AB528867	113288	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	1.908825	0.0	denovo_WM_7:-96:0.408	denovo_WM_7:-97:0.462
chr7	97541790	97541907	reg1002958.p1	9.326	+	TSC_hg19_v1_chr7_-_97501785 AK302189 M27396 AK316224 NM_001178075 NM_001178076 NM_001673 NM_183356	-40053	-	BC008723 TSC_hg19_v1_chr7_-_97501721 BC014621	-40144	-	AK302242 AK000379 NM_001178077 NM_133436	-40398	-	TSC_hg19_v1_chr7_-_97601600 AK309693 BC015431 BC042035	59746	-	BC062733 TSC_hg19_v1_chr7_-_97601645 BC029615	59795	-	TSC_hg19_v1_chr7_-_97601657 BC030024	59812	-	AK302189|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##M27396|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##AK316224|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_001178075|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_001178076|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_001673|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_183356|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##BC008723|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##BC014621|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##AK302242|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##AK000379|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_001178077|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_133436|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##BC015431|MGC72080|389538|MGC72080 pseudogene##BC042035|MGC72080|389538|MGC72080 pseudogene##BC062733|MGC72080|389538|MGC72080 pseudogene##BC029615|MGC72080|389538|MGC72080 pseudogene	1.952102	0.0	denovo_WM_7:36:0.449	denovo_WM_7:37:0.504	denovo_WM_7:51:0.356	denovo_WM_7:52:0.590
chrX	118798991	118799107	reg1001836.p2	9.325	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-59221	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-72067	-	BC042021 NM_181777	-84752	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	28036	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	28083	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	28130	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.989782	0.0	denovo_WM_7:25:0.236	denovo_WM_7:26:0.236	denovo_WM_7:27:0.236	denovo_WM_7:28:0.236
chr5	125782281	125782416	reg1002420.p1	9.323	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	-23161	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	-23505	+	NM_001146319 AK316288 AK300154	-86534	+	NM_001146322 AK303857	18468	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	148508	-	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	154284	+	AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146322|GRAMD3|65983|GRAM domain containing 3##AK303857|GRAMD3|65983|GRAM domain containing 3##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export	0.997925	0.0	
chr8	104494163	104494339	reg1002686.p1	9.323	+	TSC_hg19_v1_chr8_+_104427659 AK001874	-66586	+	TSC_hg19_v1_chr8_+_104427646 AK001693	-66605	+	AL117609 TSC_hg19_v1_chr8_+_104427613 BC026067 BC107790	-66632	+	AK126939 NM_001100117	18724	+	NM_014677 AK307790 AB018294 BC043144 AK308831 BC018057 AB384521 CU692140	337324	+	TSC_hg19_v1_chr8_+_105352053 AF277290 AF305068 AK095417 BC069349 NM_030788	857801	+	AK001874|DCAF13|25879|DDB1 and CUL4 associated factor 13##AK001693|DCAF13|25879|DDB1 and CUL4 associated factor 13##AL117609|DCAF13|25879|DDB1 and CUL4 associated factor 13##BC026067|DCAF13|25879|DDB1 and CUL4 associated factor 13##BC107790|DCAF13|25879|DDB1 and CUL4 associated factor 13##AK126939|RIMS2|9699|regulating synaptic membrane exocytosis 2##NM_001100117|RIMS2|9699|regulating synaptic membrane exocytosis 2##NM_014677|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK307790|RIMS2|9699|regulating synaptic membrane exocytosis 2##AB018294|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC043144|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK308831|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC018057|RIMS2|9699|regulating synaptic membrane exocytosis 2##AF277290|TM7SF4|81501|transmembrane 7 superfamily member 4##AF305068|TM7SF4|81501|transmembrane 7 superfamily member 4##AK095417|TM7SF4|81501|transmembrane 7 superfamily member 4##BC069349|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_030788|TM7SF4|81501|transmembrane 7 superfamily member 4	1.947128	0.0	denovo_WM_7:-51:0.254	denovo_WM_7:-53:0.259
chr5	111091923	111092071	reg1002461.p1	9.322	+	NM_001142483	-50	-	BC042956 TSC_hg19_v1_chr5_-_110848300	-243703	-	AK054566 NM_139164 TSC_hg19_v1_chr5_-_110848234 AK290312 AK310848 BC019632 AK125317 AK308851 AK315863 AK315869	-243795	-	TSC_hg19_v1_chr5_-_111092886 BC019068 BC001783 AK309667 AK310585 BX649051 BC072013 BC072443	889	-	AK315617 TSC_hg19_v1_chr5_-_111092922 NM_004772 U30521	939	-	TSC_hg19_v1_chr5_-_111093091 NM_001142482 NM_001142481	1084	-	NM_001142483|C5orf13|9315|chromosome 5 open reading frame 13##BC042956|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK054566|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_139164|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK290312|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK310848|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC019632|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK125317|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK308851|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315863|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315869|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC019068|C5orf13|9315|chromosome 5 open reading frame 13##BX649051|C5orf13|9315|chromosome 5 open reading frame 13##BC072013|C5orf13|9315|chromosome 5 open reading frame 13##BC072443|C5orf13|9315|chromosome 5 open reading frame 13##AK315617|C5orf13|9315|chromosome 5 open reading frame 13##NM_004772|C5orf13|9315|chromosome 5 open reading frame 13##U30521|C5orf13|9315|chromosome 5 open reading frame 13##NM_001142482|C5orf13|9315|chromosome 5 open reading frame 13##NM_001142481|C5orf13|9315|chromosome 5 open reading frame 13	0.994139	0.0	denovo_WM_7:4:0.459	denovo_WM_7:5:0.459
chr17	66455157	66455336	reg1002792.p2	9.319	+	AY691424 CU691786 TSC_hg19_v1_chr17_-_66453638 BC039867 AK301830 AK000917 NM_017983	-1635	-	AX750577 AX750581 U79745 AK313121 AK290417 BC064832 NM_001174166 NM_004694	-167916	-	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	-199912	+	TSC_hg19_v1_chr17_+_66508140 NM_212471 Y07642	52877	+	TSC_hg19_v1_chr17_+_66508161 BC093042	52920	+	TSC_hg19_v1_chr17_+_66508546 NM_002734 NM_212472	53289	+	AY691424|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##BC039867|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AK301830|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AK000917|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##NM_017983|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AX750581|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##U79745|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AK313121|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AK290417|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##BC064832|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##NM_001174166|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##NM_004694|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G##NM_212471|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##Y07642|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##BC093042|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##NM_002734|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##NM_212472|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)	0.538518	0.0	denovo_WM_7:-27:0.513
chr13	41059990	41060131	reg1002287.p2	9.318	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-830199	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-882698	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-882733	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	180652	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	285232	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	285272	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.992734	0.0	denovo_WM_7:-1:0.740	denovo_WM_7:-2:0.210
chr1	46048256	46048377	reg1002975.p1	9.317	+	TSC_hg19_v1_chr1_+_46016747 AK293083 BC005394	-31584	+	TSC_hg19_v1_chr1_+_46016568 BC000670 AK307237 AK307288	-31769	+	NM_001202413 NM_001202414 NM_006066 NM_153326 TSC_hg19_v1_chr1_+_46016497 AK311175 AK307068	-31828	+	NM_001195193 NM_002482 NM_152298 TSC_hg19_v1_chr1_+_46049716 AK056161 AK222778 AK222816 AK291637 AK298893 AK308001 AK299584 BC010105 BC011580 AF035191 M97856 BC009933 BC053608 BC003113 BT006757 DQ893275 DQ896606	1422	+	BC128177 BC128178 BC029888 BC065201 BC110988 AK310879 AK057646 AK303939 AK298104 NM_001114938 NM_001190182	41368	-	TSC_hg19_v1_chr1_-_46152195 BC068578 NM_021639	103926	-	AK293083|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##BC005394|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##BC000670|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307237|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307288|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_001202413|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_001202414|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_006066|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_153326|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307068|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_001195193|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##NM_002482|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##NM_152298|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK056161|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK222778|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK222816|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK291637|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK298893|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK308001|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AK299584|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BC010105|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BC011580|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##AF035191|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##M97856|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BC009933|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BC053608|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BC003113|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BT006757|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##DQ893275|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##DQ896606|NASP|4678|nuclear autoantigenic sperm protein (histone-binding)##BC128177|CCDC17|149483|coiled-coil domain containing 17##BC128178|CCDC17|149483|coiled-coil domain containing 17##BC029888|CCDC17|149483|coiled-coil domain containing 17##BC065201|CCDC17|149483|coiled-coil domain containing 17##BC110988|CCDC17|149483|coiled-coil domain containing 17##AK310879|CCDC17|149483|coiled-coil domain containing 17##AK057646|CCDC17|149483|coiled-coil domain containing 17##AK303939|CCDC17|149483|coiled-coil domain containing 17##AK298104|CCDC17|149483|coiled-coil domain containing 17##NM_001114938|CCDC17|149483|coiled-coil domain containing 17##NM_001190182|CCDC17|149483|coiled-coil domain containing 17##BC068578|GPBP1L1|60313|GC-rich promoter binding protein 1-like 1##NM_021639|GPBP1L1|60313|GC-rich promoter binding protein 1-like 1	0.998085	0.0	denovo_WM_7:37:0.951
chr18	57620917	57621070	reg1002643.p1	9.315	+	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	-53764	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-256343	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-256402	-	AK314130 NM_005912	419007	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1536781	+	AK096495 NM_173557	1939310	-	NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2##AK096495|RNF152|220441|ring finger protein 152##NM_173557|RNF152|220441|ring finger protein 152	1.821763	0.0	denovo_WM_7:-51:0.800	denovo_WM_7:-66:0.446	denovo_WM_7:-67:0.457
chr20	5017584	5017761	reg1002851.p2	9.313	+	BC013112 AF164142 NM_203327	-26747	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-35512	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-213478	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	75943	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	82883	-	AK300558 AK311014 NM_002592	89554	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.952321	0.0	denovo_WM_7:9:0.400	denovo_WM_7:12:0.316
chr1	150206728	150206888	reg1002524.p1	9.311	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-84370	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-84504	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-84676	+	AK095228 NM_001136479	217	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	1459	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	1643	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.994632	0.0	denovo_WM_7:-24:0.239	denovo_WM_7:-25:0.239	denovo_WM_7:-26:0.239	denovo_WM_7:-27:0.239
chr14	71135874	71135974	reg1001936.p1	9.310	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-27315	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-68547	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-68564	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	139885	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	238209	+	TSC_hg19_v1_chr14_+_71374441 BC140784	238527	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	0.995874	0.0	denovo_WM_7:-45:0.979
chr2	225386458	225386624	reg1002709.p2	9.310	+	U58089 TSC_hg19_v1_chr2_-_225378353	-8205	-	AF052147 BC031844 TSC_hg19_v1_chr2_-_225370764	-15813	-	BC025754 NM_001122779 NM_024785 AK026399	-119811	-	AK299644 AK291151 AF064087 AF062537 TSC_hg19_v1_chr2_-_225449842	63242	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	63500	-	TSC_hg19_v1_chr2_-_225450056 BC039598	63534	-	U58089|CUL3|8452|cullin 3##AF052147|CUL3|8452|cullin 3##BC031844|CUL3|8452|cullin 3##BC025754|FAM124B|79843|family with sequence similarity 124B##NM_001122779|FAM124B|79843|family with sequence similarity 124B##NM_024785|FAM124B|79843|family with sequence similarity 124B##AK026399|FAM124B|79843|family with sequence similarity 124B##AK299644|CUL3|8452|cullin 3##AK291151|CUL3|8452|cullin 3##AF064087|CUL3|8452|cullin 3##AF062537|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3	0.992223	0.0	denovo_WM_7:-20:0.227	denovo_WM_7:-22:0.635
chr19	4379373	4379512	reg1002244.p1	9.309	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-35883	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-36692	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-40644	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	20951	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	21111	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	23274	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.991269	0.0	denovo_WM_7:-11:0.490	denovo_WM_7:-12:0.490
chrX	118622809	118622928	reg1002113.p1	9.309	+	TSC_hg19_v1_chrX_+_118602407 BC068199 J02683 BC056160 CU691128	-20434	+	NM_001152 TSC_hg19_v1_chrX_+_118602390 AK315292	-20492	+	TSC_hg19_v1_chrX_+_118533353 AK091304 AK303932 AX746905 AK292035 CU676444 AL590525	-89462	+	CU692786 TSC_hg19_v1_chrX_-_118699348 AK096297 BC023506 AK026618 AK298877 NM_001170569	76476	-	TSC_hg19_v1_chrX_-_118699373 NM_001170570 NM_022101	76516	-	TSC_hg19_v1_chrX_+_118708527 AK301675 NM_003336 NM_181762 D28459 AK313092 AK223045 AK297696 AK223064	85637	+	BC068199|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##J02683|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##BC056160|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##NM_001152|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK315292|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK091304|SLC25A43|203427|solute carrier family 25, member 43##AK303932|SLC25A43|203427|solute carrier family 25, member 43##AK292035|SLC25A43|203427|solute carrier family 25, member 43##AL590525|SLC25A43|203427|solute carrier family 25, member 43##AK096297|CXorf56|63932|chromosome X open reading frame 56##BC023506|CXorf56|63932|chromosome X open reading frame 56##AK026618|CXorf56|63932|chromosome X open reading frame 56##AK298877|CXorf56|63932|chromosome X open reading frame 56##NM_001170569|CXorf56|63932|chromosome X open reading frame 56##NM_001170570|CXorf56|63932|chromosome X open reading frame 56##NM_022101|CXorf56|63932|chromosome X open reading frame 56##AK301675|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_003336|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181762|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D28459|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK313092|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223045|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK297696|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223064|UBE2A|7319|ubiquitin-conjugating enzyme E2A	0.997998	0.705647	denovo_WM_7:-10:0.743	denovo_WM_7:-11:0.228	CTCF.p2:37:0.706
chr1	236322892	236323043	reg1002655.p1	9.307	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-17091	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-94227	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-94469	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	122221	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	122349	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	234716	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.989962	0.0	denovo_WM_7:-42:0.920
chr4	140252473	140252644	reg1002574.p1	9.307	+	TSC_hg19_v1_chr4_-_140223626 AK023115 NM_001184987 NM_001184988 NM_001184989 NM_001184990	-28901	-	TSC_hg19_v1_chr4_+_140222680 NM_057175 BC039818 AJ314788 BC093928 BC104806 AB528041 AY112670 AK023387	-29747	+	AK314626 TSC_hg19_v1_chr4_+_140222652 AK304417 AF327722 AK023402 AY039242	-29916	+	TSC_hg19_v1_chr4_-_140374867 AK097885	122316	-	AL136904 NM_031296	122402	+	AF462150 TSC_hg19_v1_chr4_-_140477374 AB385499 BC066361 AK310856 BC121055 BC121056 AB051504 AF448510 NM_030648	224875	-	AK023115|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184987|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184988|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184989|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184990|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_057175|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##BC039818|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AJ314788|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##BC093928|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##BC104806|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AY112670|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AK023387|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AK314626|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AK304417|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AF327722|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AK023402|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AY039242|NAA15|80155|N(alpha)-acetyltransferase 15, NatA auxiliary subunit##AL136904|RAB33B|83452|RAB33B, member RAS oncogene family##NM_031296|RAB33B|83452|RAB33B, member RAS oncogene family##AF462150|SETD7|80854|SET domain containing (lysine methyltransferase) 7##BC066361|SETD7|80854|SET domain containing (lysine methyltransferase) 7##AK310856|SETD7|80854|SET domain containing (lysine methyltransferase) 7##BC121055|SETD7|80854|SET domain containing (lysine methyltransferase) 7##BC121056|SETD7|80854|SET domain containing (lysine methyltransferase) 7##AB051504|SETD7|80854|SET domain containing (lysine methyltransferase) 7##AF448510|SETD7|80854|SET domain containing (lysine methyltransferase) 7##NM_030648|SETD7|80854|SET domain containing (lysine methyltransferase) 7	1.897031	0.0	denovo_WM_7:35:0.843	denovo_WM_7:51:0.682
chr15	77703844	77704024	reg1002944.p2	9.305	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-231206	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-340390	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-340451	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	8609	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	9097	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	9328	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	0.0	0.0	
chr1	172150909	172151017	reg1001755.p1	9.301	+	TSC_hg19_v1_chr1_+_171810630 NM_001136127 NM_015569 AK056279 AL136712 AB020627 AK308992 AK307806 BC064546 AB385386 AM393667 AM393846	-340260	+	TSC_hg19_v1_chr1_+_171750834 AB242174 AF132936 AL049669 AK027552 AB242175	-400125	+	TSC_hg19_v1_chr1_+_171750809 AK291740 AK027621	-400149	+	AL035295 NM_139240 BC038410	238865	+	TSC_hg19_v1_chr1_-_172413202 BC006539	262225	-	TSC_hg19_v1_chr1_-_172413207 AK308201	262244	-	NM_001136127|DNM3|26052|dynamin 3##NM_015569|DNM3|26052|dynamin 3##AK056279|DNM3|26052|dynamin 3##AL136712|DNM3|26052|dynamin 3##AB020627|DNM3|26052|dynamin 3##AK308992|DNM3|26052|dynamin 3##AK307806|DNM3|26052|dynamin 3##BC064546|DNM3|26052|dynamin 3##AM393667|DNM3|26052|dynamin 3##AM393846|DNM3|26052|dynamin 3##AB242174|METTL13|51603|methyltransferase like 13##AF132936|METTL13|51603|methyltransferase like 13##AL049669|METTL13|51603|methyltransferase like 13##AK027552|METTL13|51603|methyltransferase like 13##AB242175|METTL13|51603|methyltransferase like 13##AK291740|METTL13|51603|methyltransferase like 13##AK027621|METTL13|51603|methyltransferase like 13##AL035295|C1orf105|92346|chromosome 1 open reading frame 105##NM_139240|C1orf105|92346|chromosome 1 open reading frame 105##BC038410|C1orf105|92346|chromosome 1 open reading frame 105##BC006539|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C##AK308201|PIGC|5279|phosphatidylinositol glycan anchor biosynthesis, class C	0.994941	0.0	denovo_WM_7:-9:0.332	denovo_WM_7:-10:0.332	denovo_WM_7:-11:0.332
chr12	9791337	9791470	reg1002435.p1	9.301	+	BC027885 BC113997 BC114516 U11276 NM_002258 AK292022	-30907	-	TSC_hg19_v1_chr12_-_9600810 BC035635 BC128040 BC111733	-190605	-	TSC_hg19_v1_chr12_+_9436619 AK123583 AK309820	-354778	+	TSC_hg19_v1_chr12_+_9800760 AK096274	9493	+	BC063128 NM_001197318 NM_013269 AK310150 NM_001004419 AK310554 AK313554 BC019883 AF133299 AF285087 CU676474 FN813349 FN813350 FN813351 NM_001197317 NM_001197319	30864	+	AF518873 BC093857 BC093859 NM_001253748 NM_001253750 NM_172004	94473	-	BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC035635|DDX12P|440081|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK309820|LOC642846|642846|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like##AK096274|LOC374443|374443|CLR pseudogene##BC063128|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197318|CLEC2D|29121|C-type lectin domain family 2, member D##NM_013269|CLEC2D|29121|C-type lectin domain family 2, member D##AK310150|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001004419|CLEC2D|29121|C-type lectin domain family 2, member D##AK310554|CLEC2D|29121|C-type lectin domain family 2, member D##AK313554|CLEC2D|29121|C-type lectin domain family 2, member D##BC019883|CLEC2D|29121|C-type lectin domain family 2, member D##AF133299|CLEC2D|29121|C-type lectin domain family 2, member D##AF285087|CLEC2D|29121|C-type lectin domain family 2, member D##FN813349|CLEC2D|29121|C-type lectin domain family 2, member D##FN813350|CLEC2D|29121|C-type lectin domain family 2, member D##FN813351|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197317|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197319|CLEC2D|29121|C-type lectin domain family 2, member D##AF518873|CLECL1|160365|C-type lectin-like 1##BC093857|CLECL1|160365|C-type lectin-like 1##BC093859|CLECL1|160365|C-type lectin-like 1##NM_001253748|CLECL1|160365|C-type lectin-like 1##NM_001253750|CLECL1|160365|C-type lectin-like 1##NM_172004|CLECL1|160365|C-type lectin-like 1	1.996958	0.0	denovo_WM_7:48:0.444	denovo_WM_7:49:0.296	denovo_WM_7:64:0.323	denovo_WM_7:65:0.471
chr3	64149529	64149689	reg1002999.p1	9.300	+	AF530062 AB463196 TSC_hg19_v1_chr3_-_64009149 BC000630 AK095059 AY568086 D14663 NM_014814 BC012369 BC000904 AK290205 BX647742 AF215935	-140459	-	NM_001128149 AK310745 AK304062	-196152	+	NM_001177387	-265535	+	BC119002 AL833539 NM_198859	61511	-	AK057923 TSC_hg19_v1_chr3_+_64670789 BC040632	521182	+	AB037733 TSC_hg19_v1_chr3_-_64672299	522686	-	AF530062|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000630|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK095059|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AY568086|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##D14663|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_014814|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC012369|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000904|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK290205|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BX647742|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AF215935|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_001128149|ATXN7|6314|ataxin 7##AK310745|ATXN7|6314|ataxin 7##AK304062|ATXN7|6314|ataxin 7##NM_001177387|ATXN7|6314|ataxin 7##BC119002|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AL833539|PRICKLE2|166336|prickle homolog 2 (Drosophila)##NM_198859|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AK057923|ADAMTS9-AS2|100507098|ADAMTS9 antisense RNA 2 (non-protein coding)##BC040632|ADAMTS9-AS2|100507098|ADAMTS9 antisense RNA 2 (non-protein coding)##AB037733|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9	0.99507	0.0	
chr16	72501196	72501318	reg1002756.p1	9.299	+	AK122925 NM_001160213	-294909	-	AL136795 AK315004 BC028423 AK093285 AX748032 NM_031293	-295214	-	NM_001142318	-373043	-	TSC_hg19_v1_chr16_+_72699031 AK021563	197807	+	TSC_hg19_v1_chr16_-_72991733 BC029653	490448	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	580964	-	AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AL136795|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK315004|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##BC028423|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK093285|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_031293|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001142318|TXNL4B|54957|thioredoxin-like 4B##BC029653|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3	0.999236	0.639465	CTCF.p2:-1:0.639	denovo_WM_7:31:0.808
chrX	115004584	115004764	reg1000035.p3	9.294	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-176806	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-207632	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-209068	+	BC003645 TSC_hg19_v1_chrX_-_115085443	80765	-	AK313927 NM_000686 X87723 U16957	297321	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	563093	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chr2	113413669	113413791	reg1002320.p1	9.292	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-10210	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-71541	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	-71692	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	108492	-	NM_000575 BC035169	129242	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	180614	-	NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta	0.999679	0.0	
chr4	27863548	27863673	reg1002939.p1	9.292	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-1001070	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-1277930	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-1371625	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	2858389	+	AB006757 TSC_hg19_v1_chr4_+_30722198	2858584	+	TSC_hg19_v1_chr4_+_30722465 AB006756	2858849	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.993656	0.241374	denovo_WM_7:-9:0.375	denovo_WM_7:-10:0.591	CTCF.p2:-27:0.241
chr1	150159121	150159285	reg1000864.p1	9.289	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-36765	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-36899	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-37071	+	AK095228 NM_001136479	47822	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	49064	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	49248	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.986781	0.0	
chr3	134496329	134496482	reg1002669.p1	9.289	+	BC136349 AK293840 AK294500 AK090526 AK126993 AX746495 NM_178554 TSC_hg19_v1_chr3_-_134369865	-126560	-	AK023448 BC068997 TSC_hg19_v1_chr3_+_134205041 NM_025180 AK056465	-291381	+	TSC_hg19_v1_chr3_+_134204899 NM_001042400	-291521	+	TSC_hg19_v1_chr3_+_134514101 NM_004441 AK291208 AK309741 L40636	17746	+	TSC_hg19_v1_chr3_+_134514301 BC111744	17896	+	TSC_hg19_v1_chr3_+_135684569 NM_001190447 NM_002718 AK293012 BC015034 BC065531 AK298059 AK314243	1188126	+	BC136349|KY|339855|kyphoscoliosis peptidase##AK293840|KY|339855|kyphoscoliosis peptidase##AK294500|KY|339855|kyphoscoliosis peptidase##AK090526|KY|339855|kyphoscoliosis peptidase##AK126993|KY|339855|kyphoscoliosis peptidase##NM_178554|KY|339855|kyphoscoliosis peptidase##AK023448|CEP63|80254|centrosomal protein 63kDa##BC068997|CEP63|80254|centrosomal protein 63kDa##NM_025180|CEP63|80254|centrosomal protein 63kDa##AK056465|CEP63|80254|centrosomal protein 63kDa##NM_001042400|CEP63|80254|centrosomal protein 63kDa##NM_004441|EPHB1|2047|EPH receptor B1##AK291208|EPHB1|2047|EPH receptor B1##AK309741|EPHB1|2047|EPH receptor B1##L40636|EPHB1|2047|EPH receptor B1##BC111744|EPHB1|2047|EPH receptor B1##NM_001190447|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_002718|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK293012|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC015034|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC065531|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK298059|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK314243|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha	1.996949	0.0	denovo_WM_7:52:0.864	denovo_WM_7:67:0.883
chr7	38218396	38218561	reg1002785.p2	9.289	+	TSC_hg19_v1_chr7_+_38217932 AK091579 AX747072 AJ492267 AY358645 BC005959	-520	+	NM_032016 AK315404 TSC_hg19_v1_chr7_+_38217846	-650	+	NM_001242948 AK309180	-257551	+	BC062761 BC105589 AF151103 NM_001003799 NM_001003806	94761	-	TSC_hg19_v1_chr7_-_38375202 AK291611 BC027954	156726	-	Y00482 TSC_hg19_v1_chr7_-_38389512	170998	-	AK091579|STARD3NL|83930|STARD3 N-terminal like##AJ492267|STARD3NL|83930|STARD3 N-terminal like##AY358645|STARD3NL|83930|STARD3 N-terminal like##BC005959|STARD3NL|83930|STARD3 N-terminal like##NM_032016|STARD3NL|83930|STARD3 N-terminal like##AK315404|STARD3NL|83930|STARD3 N-terminal like##NM_001242948|EPDR1|54749|ependymin related protein 1 (zebrafish)##AK309180|EPDR1|54749|ependymin related protein 1 (zebrafish)##BC062761|TRGV9|6983|T cell receptor gamma variable 9##BC105589|TARP|445347|TCR gamma alternate reading frame protein##AF151103|TARP|445347|TCR gamma alternate reading frame protein##NM_001003799|TARP|445347|TCR gamma alternate reading frame protein##NM_001003806|TARP|445347|TCR gamma alternate reading frame protein##BC027954|TRGV7|6981|T cell receptor gamma variable 7 (pseudogene)	0.980606	0.0	denovo_WM_7:-3:0.778
chr12	50647813	50647934	reg1002329.p1	9.288	+	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	-31417	-	AK023649 AF157325 NM_001243775	-52564	-	TSC_hg19_v1_chr12_-_50561153 AK298924	-86648	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	29422	-	BC054024 AL833333 NM_001145475	142524	-	NM_001170803 NM_001170804 NM_001170808 NM_052879 NM_199188 NM_199190 TSC_hg19_v1_chr12_+_50794671 AL832198 CR936626 AL833272 BC022377 BC063479 AF370416 AK291746 AY004310 AK055521 BX647457 CU687740 EU831655 EU831738 EU831909 EU832003	146819	+	AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AK298924|CERS5|91012|ceramide synthase 5##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1##BC054024|FAM186A|121006|family with sequence similarity 186, member A##AL833333|FAM186A|121006|family with sequence similarity 186, member A##NM_001145475|FAM186A|121006|family with sequence similarity 186, member A##NM_001170803|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170804|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170808|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_052879|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199188|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199190|LARP4|113251|La ribonucleoprotein domain family, member 4##AL832198|LARP4|113251|La ribonucleoprotein domain family, member 4##CR936626|LARP4|113251|La ribonucleoprotein domain family, member 4##AL833272|LARP4|113251|La ribonucleoprotein domain family, member 4##BC022377|LARP4|113251|La ribonucleoprotein domain family, member 4##BC063479|LARP4|113251|La ribonucleoprotein domain family, member 4##AF370416|LARP4|113251|La ribonucleoprotein domain family, member 4##AK291746|LARP4|113251|La ribonucleoprotein domain family, member 4##AY004310|LARP4|113251|La ribonucleoprotein domain family, member 4##AK055521|LARP4|113251|La ribonucleoprotein domain family, member 4##BX647457|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831655|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831738|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831909|LARP4|113251|La ribonucleoprotein domain family, member 4##EU832003|LARP4|113251|La ribonucleoprotein domain family, member 4	0.991515	0.0	
chr3	101655521	101655651	reg1002637.p1	9.288	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-87212	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-108626	+	AK289689 NM_001134456	-157301	+	AY090780 NM_175056 BC143817	498281	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3429994	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3430236	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	1.380895	0.0	denovo_WM_7:-70:0.225	denovo_WM_7:-89:0.254
chr5	122847802	122847961	reg1002497.p2	9.287	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-88737	-	NM_001136239 AK297992 AF272898 AF272899	-423037	+	TSC_hg19_v1_chr5_-_122372418 AK304053 NM_000943	-475457	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	1	+	BC131507 AB033107 BC151226 NM_020747	1232907	-	NM_001146319 AK316288 AK300154	2847933	+	BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##AK304053|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_000943|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3	0.785153	0.0	denovo_WM_7:-19:0.663
chr10	119101879	119102026	reg1003073.p1	9.285	+	NM_003054 BC030593 TSC_hg19_v1_chr10_+_119000626 AK314997 L23205 L09118 X71354 L14269 BC108927 BC108928	-101302	+	AB087138 AB464053 NM_181840	-144953	+	AK127095 NM_001112704 NM_199131	-204141	-	CU688476 TSC_hg19_v1_chr10_-_119134939 BC012186 BC028375 NM_173791 AK091746 AX747159 BC033019	32929	-	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	199964	-	AF301598 NM_001165924 NM_004098	200003	+	NM_003054|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC030593|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##AK314997|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L23205|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L09118|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##X71354|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L14269|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC108927|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC108928|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##AB087138|KCNK18|338567|potassium channel, subfamily K, member 18##NM_181840|KCNK18|338567|potassium channel, subfamily K, member 18##AK127095|VAX1|11023|ventral anterior homeobox 1##NM_001112704|VAX1|11023|ventral anterior homeobox 1##NM_199131|VAX1|11023|ventral anterior homeobox 1##BC012186|PDZD8|118987|PDZ domain containing 8##BC028375|PDZD8|118987|PDZ domain containing 8##NM_173791|PDZD8|118987|PDZ domain containing 8##AK091746|PDZD8|118987|PDZ domain containing 8##BC033019|PDZD8|118987|PDZ domain containing 8##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2	0.976045	0.0	denovo_WM_7:45:0.674	denovo_WM_7:46:0.237
chr10	60753444	60753617	reg1002826.p1	9.285	+	TSC_hg19_v1_chr10_+_60272869 NM_001080512 AY726586	-480618	+	BC029815 TSC_hg19_v1_chr10_+_60145169 AK312558 M62810 NM_003201 BC018628 BC104482 BC126366 EU279428 HQ258758 AB451241 AB451366 AB464302 BT019658 BT019659 CR407653	-608325	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	-658694	+	TSC_hg19_v1_chr10_-_60936189 AK055418	182676	-	AL834339 NM_032439 TSC_hg19_v1_chr10_+_60936408 CR749429	182858	+	BC011268 AK054956 TSC_hg19_v1_chr10_+_60936573 AB384640 AM392743	183030	+	NM_001080512|BICC1|80114|bicaudal C homolog 1 (Drosophila)##AY726586|BICC1|80114|bicaudal C homolog 1 (Drosophila)##BC029815|TFAM|7019|transcription factor A, mitochondrial##AK312558|TFAM|7019|transcription factor A, mitochondrial##M62810|TFAM|7019|transcription factor A, mitochondrial##NM_003201|TFAM|7019|transcription factor A, mitochondrial##BC018628|TFAM|7019|transcription factor A, mitochondrial##BC104482|TFAM|7019|transcription factor A, mitochondrial##BC126366|TFAM|7019|transcription factor A, mitochondrial##EU279428|TFAM|7019|transcription factor A, mitochondrial##HQ258758|TFAM|7019|transcription factor A, mitochondrial##AB451241|TFAM|7019|transcription factor A, mitochondrial##AB451366|TFAM|7019|transcription factor A, mitochondrial##BT019658|TFAM|7019|transcription factor A, mitochondrial##BT019659|TFAM|7019|transcription factor A, mitochondrial##CR407653|TFAM|7019|transcription factor A, mitochondrial##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AL834339|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##NM_032439|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##CR749429|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##BC011268|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AK054956|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AM392743|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like	0.987596	0.0	denovo_WM_7:28:0.344	denovo_WM_7:30:0.591
chr16	84721457	84721623	reg1002479.p2	9.285	+	TSC_hg19_v1_chr16_+_84682127 BC033821 NM_024731 BC032400	-39406	+	TSC_hg19_v1_chr16_-_84651682 L54057 BC053682 BC010039 NM_021149 AK315675 BC016702 BC042970	-69880	-	AB590839 BT006968 EU832743 TSC_hg19_v1_chr16_-_84651627 BC010884	-69964	-	NM_005153 TSC_hg19_v1_chr16_+_84733587 BC000263	12034	+	TSC_hg19_v1_chr16_+_84733603 AK315570 CR749515	12060	+	TSC_hg19_v1_chr16_+_84733609 AK293304 AK299618	12067	+	BC033821|KLHL36|79786|kelch-like 36 (Drosophila)##NM_024731|KLHL36|79786|kelch-like 36 (Drosophila)##BC032400|KLHL36|79786|kelch-like 36 (Drosophila)##L54057|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC053682|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010039|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_021149|COTL1|23406|coactosin-like 1 (Dictyostelium)##AK315675|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC016702|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC042970|COTL1|23406|coactosin-like 1 (Dictyostelium)##BT006968|COTL1|23406|coactosin-like 1 (Dictyostelium)##EU832743|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010884|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_005153|USP10|9100|ubiquitin specific peptidase 10##BC000263|USP10|9100|ubiquitin specific peptidase 10##AK315570|USP10|9100|ubiquitin specific peptidase 10##CR749515|USP10|9100|ubiquitin specific peptidase 10##AK293304|USP10|9100|ubiquitin specific peptidase 10##AK299618|USP10|9100|ubiquitin specific peptidase 10	0.998738	0.0	denovo_WM_7:14:0.494	denovo_WM_7:15:0.494
chr2	74253771	74253951	reg1002609.p2	9.284	+	TSC_hg19_v1_chr2_+_74154019 X97386	-99815	+	TSC_hg19_v1_chr2_+_74154006 BC024019 U41668 BC001121 BC015757	-99861	+	TSC_hg19_v1_chr2_+_74153968 NM_080916 NM_080918	-99911	+	NM_144993	19588	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	121157	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	121359	+	X97386|DGUOK|1716|deoxyguanosine kinase##BC024019|DGUOK|1716|deoxyguanosine kinase##U41668|DGUOK|1716|deoxyguanosine kinase##BC001121|DGUOK|1716|deoxyguanosine kinase##BC015757|DGUOK|1716|deoxyguanosine kinase##NM_080916|DGUOK|1716|deoxyguanosine kinase##NM_080918|DGUOK|1716|deoxyguanosine kinase##NM_144993|TET3|200424|tet methylcytosine dioxygenase 3##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)	1.0415	0.0	denovo_WM_7:0:0.739
chr6	108580183	108580323	reg1002762.p2	9.283	+	NM_003269 AF220532	-93016	+	TSC_hg19_v1_chr6_-_108395940 BC016376 NM_014028	-184314	-	TSC_hg19_v1_chr6_-_108395924 AF533891 AY358795 BC059412 AK129854	-184323	-	BT007114 CR456898 CU677753 EU831975 EU832068 TSC_hg19_v1_chr6_-_108582163 AF062483 AB047360 AF034546	1890	-	TSC_hg19_v1_chr6_-_108582217 BC008444	1941	-	TSC_hg19_v1_chr6_-_108582245 BC015179 BC014580 AK289476	1985	-	NM_003269|NR2E1|7101|nuclear receptor subfamily 2, group E, member 1##AF220532|NR2E1|7101|nuclear receptor subfamily 2, group E, member 1##BC016376|OSTM1|28962|osteopetrosis associated transmembrane protein 1##NM_014028|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AF533891|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AY358795|OSTM1|28962|osteopetrosis associated transmembrane protein 1##BC059412|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AK129854|OSTM1|28962|osteopetrosis associated transmembrane protein 1##BT007114|SNX3|8724|sorting nexin 3##CR456898|SNX3|8724|sorting nexin 3##EU831975|SNX3|8724|sorting nexin 3##EU832068|SNX3|8724|sorting nexin 3##AF062483|SNX3|8724|sorting nexin 3##AB047360|SNX3|8724|sorting nexin 3##AF034546|SNX3|8724|sorting nexin 3##BC008444|SNX3|8724|sorting nexin 3##BC015179|SNX3|8724|sorting nexin 3##BC014580|SNX3|8724|sorting nexin 3##AK289476|SNX3|8724|sorting nexin 3	0.969654	0.0	denovo_WM_7:2:0.825
chr14	69259985	69260120	reg1002236.p1	9.282	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	-332	-	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-973532	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-976753	-	NM_001244698 NM_004926	578	-	NM_001244701 AB528867	2932	-	TSC_hg19_v1_chr14_-_69354901 BX641076	94887	-	BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BX641076|ACTN1|87|actinin, alpha 1	0.99191	0.0	denovo_WM_7:-8:0.202	denovo_WM_7:-10:0.203	denovo_WM_7:-11:0.523
chr17	46490324	46490448	reg1001681.p1	9.280	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-305234	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-305401	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-311565	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	17152	-	TSC_hg19_v1_chr17_-_46507604 BC039040	17231	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	117885	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	0.534123	0.0	denovo_WM_7:38:0.411
chr12	96801456	96801583	reg1002668.p1	9.277	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-7202	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	-7536	-	TSC_hg19_v1_chr12_+_96588254 BC017371	-213252	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	499512	+	BC027605 NM_001135175	499724	+	TSC_hg19_v1_chr12_-_98897622 AK126817	2096108	-	AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK126817|LOC643770|643770|uncharacterized LOC643770	0.999595	0.0	denovo_WM_7:-41:0.257	denovo_WM_7:-44:0.513
chr22	45460508	45460660	reg1002808.p1	9.276	+	TSC_hg19_v1_chr22_-_45405781 AK092243 AX747427 NM_001135862	-54790	-	AB489146 CU012999 CU013287 CU680262 CR456448 BC012187 NM_138415	-55080	-	TSC_hg19_v1_chr22_-_45404785 AK299836 AK297317 AK091480 AX747013 NM_001242450	-55755	-	NM_007172 TSC_hg19_v1_chr22_+_45559808	99187	+	TSC_hg19_v1_chr22_+_45559866 AK314454 BC070133	99282	+	AK304223 TSC_hg19_v1_chr22_+_45559883 BC016055 AF107840 AL389949 AL389950	99436	+	AK092243|PHF21B|112885|PHD finger protein 21B##NM_001135862|PHF21B|112885|PHD finger protein 21B##CU012999|PHF21B|112885|PHD finger protein 21B##CU013287|PHF21B|112885|PHD finger protein 21B##CR456448|PHF21B|112885|PHD finger protein 21B##BC012187|PHF21B|112885|PHD finger protein 21B##NM_138415|PHF21B|112885|PHD finger protein 21B##AK299836|PHF21B|112885|PHD finger protein 21B##AK297317|PHF21B|112885|PHD finger protein 21B##AK091480|PHF21B|112885|PHD finger protein 21B##NM_001242450|PHF21B|112885|PHD finger protein 21B##NM_007172|NUP50|10762|nucleoporin 50kDa##AK314454|NUP50|10762|nucleoporin 50kDa##BC070133|NUP50|10762|nucleoporin 50kDa##AK304223|NUP50|10762|nucleoporin 50kDa##BC016055|NUP50|10762|nucleoporin 50kDa##AF107840|NUP50|10762|nucleoporin 50kDa##AL389949|NUP50|10762|nucleoporin 50kDa##AL389950|NUP50|10762|nucleoporin 50kDa	0.993988	0.0	denovo_WM_7:-14:0.865
chr17	73372523	73372672	reg1002791.p1	9.275	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-87068	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-87125	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-105283	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	17180	-	AK091010 TSC_hg19_v1_chr17_-_73401721	29047	-	TSC_hg19_v1_chr17_-_73401738 BC000631	29137	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	0.9987	0.0	denovo_WM_7:11:0.450	denovo_WM_7:12:0.450
chr2	242256876	242257034	reg1002661.p1	9.274	+	TSC_hg19_v1_chr2_+_242255366 AK294563	-1589	+	TSC_hg19_v1_chr2_+_242255355 D28540	-1600	+	TSC_hg19_v1_chr2_+_242255342 BX648000	-1614	+	TSC_hg19_v1_chr2_+_242295703 NM_014808 AK300435 AB018336 BC021301	38745	+	BT019961 CU675833 CU677445 DQ893230 DQ896559 AB529004 D63780 X99325 TSC_hg19_v1_chr2_-_242447784 BC015793	190672	-	TSC_hg19_v1_chr2_-_242447969 AK092161 AK302751 AK297374 AK301214 AK291808 AK291947	191004	-	AK294563|SEPT2|4735|septin 2##D28540|SEPT2|4735|septin 2##BX648000|SEPT2|4735|septin 2##NM_014808|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AK300435|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AB018336|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##BC021301|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##BT019961|STK25|10494|serine/threonine kinase 25##DQ893230|STK25|10494|serine/threonine kinase 25##DQ896559|STK25|10494|serine/threonine kinase 25##D63780|STK25|10494|serine/threonine kinase 25##X99325|STK25|10494|serine/threonine kinase 25##BC015793|STK25|10494|serine/threonine kinase 25##AK092161|STK25|10494|serine/threonine kinase 25##AK302751|STK25|10494|serine/threonine kinase 25##AK297374|STK25|10494|serine/threonine kinase 25##AK301214|STK25|10494|serine/threonine kinase 25##AK291808|STK25|10494|serine/threonine kinase 25##AK291947|STK25|10494|serine/threonine kinase 25	0.990396	0.0	denovo_WM_7:3:0.330	denovo_WM_7:4:0.330	denovo_WM_7:5:0.330
chr5	142562597	142562689	reg1001187.p1	9.272	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-412335	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-412671	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-485072	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	220180	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	220463	-	BC015610 TSC_hg19_v1_chr5_-_142783214	220568	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	1.009516	0.0	denovo_WM_7:3:0.238	denovo_WM_7:4:0.232	denovo_WM_7:5:0.224	denovo_WM_7:6:0.224
chr7	89761279	89761406	reg1002867.p1	9.272	+	BC028365 NM_152706	-1336312	-	BC140826 BC140829 AK056672 AY295769 NM_181646	-1372626	+	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	-1825128	-	NM_012449 TSC_hg19_v1_chr7_+_89783782 AK308452 BC011802	22395	+	AK304076 TSC_hg19_v1_chr7_+_89783791 AF186249	22470	+	AF455138 NM_001244944 NM_001244945 NM_152999 AK092666 AX747660 TSC_hg19_v1_chr7_+_89841171 AY008443 AY008444 AY008445 NM_001040665 NM_001244946 AK315043	79773	+	BC028365|C7orf62|219557|chromosome 7 open reading frame 62##NM_152706|C7orf62|219557|chromosome 7 open reading frame 62##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B##BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##NM_012449|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK308452|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##BC011802|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK304076|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF186249|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF455138|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244944|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244945|STEAP2|261729|STEAP family member 2, metalloreductase##NM_152999|STEAP2|261729|STEAP family member 2, metalloreductase##AK092666|STEAP2|261729|STEAP family member 2, metalloreductase##AY008443|STEAP2|261729|STEAP family member 2, metalloreductase##AY008444|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001040665|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244946|STEAP2|261729|STEAP family member 2, metalloreductase##AK315043|STEAP2|261729|STEAP family member 2, metalloreductase	0.989281	0.046935	denovo_WM_7:-48:0.334	denovo_WM_7:-49:0.497
chr22	43773088	43773268	reg1002016.p1	9.271	+	AB528481 AF525689 BC127263 BC047916 TSC_hg19_v1_chr22_-_43739356 AK127719 NM_173050	-33840	-	TSC_hg19_v1_chr22_-_43583141 NM_015140	-190022	-	D63487 AL590888 CT841516 TSC_hg19_v1_chr22_-_43583100 BC001070	-190084	-	TSC_hg19_v1_chr22_+_43808019 AK290541 AK297276 AK299516 AK299531 NM_001044370	34839	+	TSC_hg19_v1_chr22_+_43808109 AK289774	34939	+	BC039315 TSC_hg19_v1_chr22_-_44208121 AK296679 AK292498 AK292411 AK058069 NM_022785 NM_198856	434963	-	AF525689|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##BC127263|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##BC047916|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##AK127719|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##NM_173050|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##NM_015140|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##D63487|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##AL590888|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##CT841516|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##BC001070|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##AK290541|MPPED1|758|metallophosphoesterase domain containing 1##AK297276|MPPED1|758|metallophosphoesterase domain containing 1##AK299516|MPPED1|758|metallophosphoesterase domain containing 1##AK299531|MPPED1|758|metallophosphoesterase domain containing 1##NM_001044370|MPPED1|758|metallophosphoesterase domain containing 1##AK289774|MPPED1|758|metallophosphoesterase domain containing 1##BC039315|EFCAB6|64800|EF-hand calcium binding domain 6##AK296679|EFCAB6|64800|EF-hand calcium binding domain 6##AK292498|EFCAB6|64800|EF-hand calcium binding domain 6##AK292411|EFCAB6|64800|EF-hand calcium binding domain 6##AK058069|EFCAB6|64800|EF-hand calcium binding domain 6##NM_022785|EFCAB6|64800|EF-hand calcium binding domain 6##NM_198856|EFCAB6|64800|EF-hand calcium binding domain 6	0.991474	0.0	
chr12	6921828	6921964	reg1002901.p1	9.270	+	TSC_hg19_v1_chr12_+_6898717 AK300052 AK308344 BC025782	-23149	+	TSC_hg19_v1_chr12_+_6898701 AK310652 AK310750 AK311495 AK315898 AK312828 AK316462 AK310687	-23195	+	TSC_hg19_v1_chr12_+_6898691 AK316461	-23212	+	TSC_hg19_v1_chr12_+_6931000 AK316512 BC002353 NM_014449 NM_019858 U47925 U47928 BC080585 AK315938 BC007918 AK296359	8971	+	TSC_hg19_v1_chr12_+_6937571 NM_014262 AK025976	15676	+	BC080630 TSC_hg19_v1_chr12_+_6937783 BC067251 BC017217	15984	+	AK300052|CD4|920|CD4 molecule##AK308344|CD4|920|CD4 molecule##BC025782|CD4|920|CD4 molecule##AK310652|CD4|920|CD4 molecule##AK310750|CD4|920|CD4 molecule##AK311495|CD4|920|CD4 molecule##AK315898|CD4|920|CD4 molecule##AK312828|CD4|920|CD4 molecule##AK316462|CD4|920|CD4 molecule##AK310687|CD4|920|CD4 molecule##AK316461|CD4|920|CD4 molecule##AK316512|GPR162|27239|G protein-coupled receptor 162##BC002353|GPR162|27239|G protein-coupled receptor 162##NM_014449|GPR162|27239|G protein-coupled receptor 162##NM_019858|GPR162|27239|G protein-coupled receptor 162##U47925|GPR162|27239|G protein-coupled receptor 162##U47928|GPR162|27239|G protein-coupled receptor 162##BC080585|GPR162|27239|G protein-coupled receptor 162##AK315938|GPR162|27239|G protein-coupled receptor 162##BC007918|GPR162|27239|G protein-coupled receptor 162##AK296359|GPR162|27239|G protein-coupled receptor 162##NM_014262|LEPREL2|10536|leprecan-like 2##AK025976|LEPREL2|10536|leprecan-like 2##BC080630|LEPREL2|10536|leprecan-like 2##BC067251|LEPREL2|10536|leprecan-like 2##BC017217|LEPREL2|10536|leprecan-like 2	0.937501	0.0	denovo_WM_7:-40:0.412	denovo_WM_7:-44:0.237
chr7	8006203	8006383	reg1001919.p1	9.270	+	BC009868 NM_002947	-248056	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-325920	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-326206	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	2140	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	295423	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	295498	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	2.049014	0.0	denovo_WM_7:74:0.854
chr15	41154632	41154812	reg1002970.p4	9.267	+	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-18021	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-18372	+	AK000258 BC096716 BC098124 BC098150 BC098341 NM_001130143 NM_017726	-33817	-	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	11725	-	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	31978	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	66976	+	NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK000258|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC096716|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098124|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098150|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098341|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_001130143|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_017726|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)	0.992603	0.0	denovo_WM_7:3:0.479	denovo_WM_7:4:0.479
chr2	17652172	17652307	reg1003373.p1	9.267	+	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	-805095	-	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-1570072	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-1570244	+	DQ860102 NM_001099218	47466	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	69648	+	TSC_hg19_v1_chr2_+_17721989 AF039555 U14747 AB001104	69781	+	BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1##AF039555|VSNL1|7447|visinin-like 1##U14747|VSNL1|7447|visinin-like 1##AB001104|VSNL1|7447|visinin-like 1	0.984712	0.867372	denovo_WM_7:-18:0.416	denovo_WM_7:-19:0.416	CTCF.p2:22:0.867
chr3	18169108	18169234	reg1002662.p2	9.267	+	TSC_hg19_v1_chr3_-_17784106 NM_001134380	-385004	-	D86965 NM_014744	-386773	-	AK310539 NM_001134381	-427660	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	297626	-	BC001744 NM_001131010	311062	-	AK295633 AY053503 NM_144633 AB209053 AK309034	1020833	+	NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8	0.390194	0.0	
chr6	25280741	25280884	reg1002863.p4	9.266	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	-918	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	-1154	+	TSC_hg19_v1_chr6_+_25279316 BC040903	-1494	+	TSC_hg19_v1_chr6_-_25571218 Y10205	290446	-	AK289477 NM_006998 BC000336 BC003036 Y16752	371611	+	CU687518 BC062211 NM_170745	445959	-	BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK289477|SCGN|10590|secretagogin, EF-hand calcium binding protein##NM_006998|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC000336|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC003036|SCGN|10590|secretagogin, EF-hand calcium binding protein##Y16752|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC062211|HIST1H2AA|221613|histone cluster 1, H2aa##NM_170745|HIST1H2AA|221613|histone cluster 1, H2aa	0.938947	0.0	denovo_WM_7:8:0.743
chr13	80938159	80938275	reg1002717.p2	9.262	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-23153	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-25175	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-882662	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3518208	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3518283	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5435222	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	1.100429	0.44072	denovo_WM_7:-14:0.842	CTCF.p2:15:0.441
chr6	16320002	16320182	reg1002816.p1	9.261	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-81241	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-176782	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-190655	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	441605	-	NM_001190766	782396	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	961762	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.995016	0.0	denovo_WM_7:3:0.736
chrX	140000645	140000790	reg1002857.p1	9.261	+	M16965 M16965 BC113472 BC113472 BC113474 BC113474 NM_004065	-134065	-	TSC_hg19_v1_chrX_+_139791923 AK054978	-208790	+	NM_005634 TSC_hg19_v1_chrX_-_139587235 AK313820 BC093863 BC093865	-413465	-	AF098307 AJ457796 NM_032461 NM_139019 NM_145664 BC034472 BC137533 BC137536 BC144689 AB590442 DQ892330 DQ895534	84089	+	AF098307 AJ457796 NM_032461 NM_139019 NM_145664 BC034472 BC137533 BC137536 BC144689 AB590442 DQ892330 DQ895534	96094	+	CR457088 EU446786 AB464610 TSC_hg19_v1_chrX_-_140271262	270517	-	M16965|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##M16965|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113472|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113472|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113474|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113474|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##NM_004065|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##AK054978|RP1-177G6.2|286411|uncharacterized LOC286411##NM_005634|SOX3|6658|SRY (sex determining region Y)-box 3##BC093863|SOX3|6658|SRY (sex determining region Y)-box 3##BC093865|SOX3|6658|SRY (sex determining region Y)-box 3##AF098307|SPANXB1|728695|SPANX family, member B1##AJ457796|SPANXF1|171490|SPANX family, member F1##NM_032461|SPANXB1|728695|SPANX family, member B1##NM_139019|SPANXF1|171490|SPANX family, member F1##NM_145664|SPANXB2|100133171|SPANX family, member B2##BC034472|SPANXB1|728695|SPANX family, member B1##BC137533|SPANXB1|728695|SPANX family, member B1##BC137536|SPANXB1|728695|SPANX family, member B1##DQ892330|SPANXB1|728695|SPANX family, member B1##DQ895534|SPANXB1|728695|SPANX family, member B1##AF098307|SPANXB1|728695|SPANX family, member B1##AJ457796|SPANXF1|171490|SPANX family, member F1##NM_032461|SPANXB1|728695|SPANX family, member B1##NM_139019|SPANXF1|171490|SPANX family, member F1##NM_145664|SPANXB2|100133171|SPANX family, member B2##BC034472|SPANXB1|728695|SPANX family, member B1##BC137533|SPANXB1|728695|SPANX family, member B1##BC137536|SPANXB1|728695|SPANX family, member B1##DQ892330|SPANXB1|728695|SPANX family, member B1##DQ895534|SPANXB1|728695|SPANX family, member B1##CR457088|LDOC1|23641|leucine zipper, down-regulated in cancer 1##EU446786|LDOC1|23641|leucine zipper, down-regulated in cancer 1	1.629963	1.949817	CTCF.p2:-12:0.980	denovo_WM_7:14:0.610	denovo_WM_7:-32:0.710	denovo_WM_7:-33:0.275	CTCF.p2:33:0.969
chr19	57794778	57794925	reg1002670.p2	9.260	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	-2964	+	TSC_hg19_v1_chr19_+_57791351 AK298106	-3495	+	TSC_hg19_v1_chr19_+_57752051 NM_001023563 NM_001145078	-42794	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	37063	+	TSC_hg19_v1_chr19_+_57862669 NM_020657 AJ276316 BC111531 BC111532	67812	+	AF058918 AF291676 AK055662 NM_173631 BC008889 BC032809 BC042681 AL832545 BC064426 AK291464	80065	+	AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##AK298106|ZNF460|10794|zinc finger protein 460##NM_001023563|ZNF805|390980|zinc finger protein 805##NM_001145078|ZNF805|390980|zinc finger protein 805##NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543##NM_020657|ZNF304|57343|zinc finger protein 304##AJ276316|ZNF304|57343|zinc finger protein 304##BC111531|ZNF304|57343|zinc finger protein 304##BC111532|ZNF304|57343|zinc finger protein 304##AF058918|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AF291676|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AK055662|ZNF547|284306|zinc finger protein 547##NM_173631|ZNF547|284306|zinc finger protein 547##BC008889|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC032809|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC042681|ZNF547|284306|zinc finger protein 547##AL832545|ZNF547|284306|zinc finger protein 547##AK291464|ZNF547|284306|zinc finger protein 547	0.993788	0.0	
chr9	36257841	36257981	reg1002647.p1	9.260	+	TSC_hg19_v1_chr9_+_36191041 AB463527 CU676418 BT007170 DQ270158	-66871	+	TSC_hg19_v1_chr9_+_36190960 AK225153 BC019287 M20472 M20471	-66939	+	AK295692 TSC_hg19_v1_chr9_+_36190928 BC009201	-66980	+	TSC_hg19_v1_chr9_-_36258446 BC121179 AK295562 NM_001190383 NM_001190384 NM_005476	528	-	AM697709 AM697708 AK296687 AK312539 NM_001128227 NM_001190388	19080	-	TSC_hg19_v1_chr9_-_36375965 AK024996 DQ895235 EU176239	118089	-	BT007170|CLTA|1211|clathrin, light chain A##DQ270158|CLTA|1211|clathrin, light chain A##AK225153|CLTA|1211|clathrin, light chain A##BC019287|CLTA|1211|clathrin, light chain A##M20472|CLTA|1211|clathrin, light chain A##M20471|CLTA|1211|clathrin, light chain A##AK295692|CLTA|1211|clathrin, light chain A##BC009201|CLTA|1211|clathrin, light chain A##BC121179|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK295562|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190383|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190384|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_005476|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AM697709|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AM697708|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK296687|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK312539|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001128227|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190388|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK024996|RNF38|152006|ring finger protein 38##DQ895235|RNF38|152006|ring finger protein 38##EU176239|RNF38|152006|ring finger protein 38	1.990504	0.0	denovo_WM_7:-83:0.283	denovo_WM_7:-84:0.236	denovo_WM_7:-102:0.237	denovo_WM_7:-103:0.284
chr18	44471754	44471887	reg1002711.p1	9.258	+	TSC_hg19_v1_chr18_-_44337014 AK094273 NM_013305 AK056270	-134759	-	NM_144612	-234825	-	BC041860 AK302484 NM_001145472	-332560	-	AB527541 AF077953 AF077954 DQ896421 EU176432 TSC_hg19_v1_chr18_-_44497471 AK308143 BC111060 BC015190 AK294801 NM_004671 NM_173206	25593	-	TSC_hg19_v1_chr18_+_44497558 AK309134	25737	+	BC034999 NM_031303	54966	+	AK094273|ST8SIA5|29906|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5##NM_013305|ST8SIA5|29906|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5##AK056270|ST8SIA5|29906|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5##NM_144612|LOXHD1|125336|lipoxygenase homology domains 1##BC041860|LOXHD1|125336|lipoxygenase homology domains 1##AK302484|LOXHD1|125336|lipoxygenase homology domains 1##NM_001145472|LOXHD1|125336|lipoxygenase homology domains 1##AF077953|PIAS2|9063|protein inhibitor of activated STAT, 2##AF077954|PIAS2|9063|protein inhibitor of activated STAT, 2##DQ896421|PIAS2|9063|protein inhibitor of activated STAT, 2##EU176432|PIAS2|9063|protein inhibitor of activated STAT, 2##AK308143|PIAS2|9063|protein inhibitor of activated STAT, 2##BC111060|PIAS2|9063|protein inhibitor of activated STAT, 2##BC015190|PIAS2|9063|protein inhibitor of activated STAT, 2##AK294801|PIAS2|9063|protein inhibitor of activated STAT, 2##NM_004671|PIAS2|9063|protein inhibitor of activated STAT, 2##NM_173206|PIAS2|9063|protein inhibitor of activated STAT, 2##AK309134|KATNAL2|83473|katanin p60 subunit A-like 2##BC034999|KATNAL2|83473|katanin p60 subunit A-like 2##NM_031303|KATNAL2|83473|katanin p60 subunit A-like 2	0.0	0.0	
chr11	58345937	58346099	reg1002132.p2	9.255	+	BC034230 TSC_hg19_v1_chr11_-_58345666 AK300955 NM_001143995 AK299264	-357	-	BC007490 BC019035 TSC_hg19_v1_chr11_-_58343330 AK313306 AK223165 AK301093 AF062075 NM_004811	-2670	-	NM_001005218	-70441	-	TSC_hg19_v1_chr11_+_58346591 BC051743 NM_001197051 NM_053023	565	+	TSC_hg19_v1_chr11_+_58346697 AB056107 AB057443 CU690828	677	+	BC069167 NM_000614 BC068030 AK314118 BC074963 BC074964 CU686605 S72921	44167	+	BC034230|LPXN|9404|leupaxin##AK300955|LPXN|9404|leupaxin##NM_001143995|LPXN|9404|leupaxin##AK299264|LPXN|9404|leupaxin##BC007490|LPXN|9404|leupaxin##BC019035|LPXN|9404|leupaxin##AK313306|LPXN|9404|leupaxin##AK223165|LPXN|9404|leupaxin##AK301093|LPXN|9404|leupaxin##AF062075|LPXN|9404|leupaxin##NM_004811|LPXN|9404|leupaxin##NM_001005218|OR5B21|219968|olfactory receptor, family 5, subfamily B, member 21##BC051743|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_001197051|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_053023|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB056107|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB057443|ZFP91-CNTF|386607|ZFP91-CNTF readthrough##BC069167|CNTF|1270|ciliary neurotrophic factor##NM_000614|CNTF|1270|ciliary neurotrophic factor##BC068030|CNTF|1270|ciliary neurotrophic factor##AK314118|CNTF|1270|ciliary neurotrophic factor##BC074963|CNTF|1270|ciliary neurotrophic factor##BC074964|CNTF|1270|ciliary neurotrophic factor##S72921|CNTF|1270|ciliary neurotrophic factor	0.0	0.0	
chr1	150545366	150545518	reg1002722.p1	9.253	+	TSC_hg19_v1_chr1_+_150521883 AF289612 NM_019032 NM_025008	-23588	+	AK292435 TSC_hg19_v1_chr1_+_150480584 AK301369 AK316390 AK302279 U65932 DQ893011 DQ896257	-64808	+	NM_001202858 NM_004425 NM_022664 TSC_hg19_v1_chr1_+_150480582 AK097205 AK097046 BC023505 DQ010946 DQ112074 U68186 U68187	-64908	+	AB385142 AF203373 BT006640 CU677857 DQ890628 DQ893795 FJ917536 TSC_hg19_v1_chr1_-_150552076 AF118124 BC017197 BC071897 L08246 AK300499 BC107735 AK294462	6598	-	TSC_hg19_v1_chr1_-_150552077 AK316267 AK297217 AK304775 AK312508	6639	-	TSC_hg19_v1_chr1_-_150552129 NM_001197320 NM_021960 NM_182763	6728	-	AF289612|ADAMTSL4|54507|ADAMTS-like 4##NM_019032|ADAMTSL4|54507|ADAMTS-like 4##NM_025008|ADAMTSL4|54507|ADAMTS-like 4##AK292435|ECM1|1893|extracellular matrix protein 1##AK301369|ECM1|1893|extracellular matrix protein 1##AK316390|ECM1|1893|extracellular matrix protein 1##AK302279|ECM1|1893|extracellular matrix protein 1##U65932|ECM1|1893|extracellular matrix protein 1##DQ893011|ECM1|1893|extracellular matrix protein 1##DQ896257|ECM1|1893|extracellular matrix protein 1##NM_001202858|ECM1|1893|extracellular matrix protein 1##NM_004425|ECM1|1893|extracellular matrix protein 1##NM_022664|ECM1|1893|extracellular matrix protein 1##AK097205|ECM1|1893|extracellular matrix protein 1##AK097046|ECM1|1893|extracellular matrix protein 1##BC023505|ECM1|1893|extracellular matrix protein 1##U68186|ECM1|1893|extracellular matrix protein 1##U68187|ECM1|1893|extracellular matrix protein 1##AF203373|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BT006640|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ890628|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##DQ893795|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##FJ917536|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AF118124|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC017197|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC071897|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##L08246|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK300499|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##BC107735|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK294462|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK316267|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK297217|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK304775|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##AK312508|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_001197320|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_021960|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)##NM_182763|MCL1|4170|myeloid cell leukemia sequence 1 (BCL2-related)	0.993009	0.0	denovo_WM_7:-38:0.314	denovo_WM_7:-39:0.314	denovo_WM_7:-40:0.314
chr11	269638	269818	reg1002020.p2	9.252	+	TSC_hg19_v1_chr11_+_236975 AK295944 AK094775 AK222895 AB009398 BC001100 AF083245 AK307447 AF107837 BC001747 BX647314 AB528493 DQ892171 DQ895365 AF086708 BT007307	-32721	+	AK316175 TSC_hg19_v1_chr11_-_236906 AK308681	-32839	-	NM_002817 NM_175932	-32921	+	AF479748 AY154461 NM_138329	8841	+	TSC_hg19_v1_chr11_+_289125 AK074155 NM_025092 BC066641	19414	+	BC150562 BC150563 NM_001025295	29793	-	AK295944|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK094775|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK222895|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AB009398|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BC001100|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF083245|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK307447|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF107837|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BC001747|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BX647314|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##DQ892171|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##DQ895365|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF086708|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BT007307|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK316175|SIRT3|23410|sirtuin 3##AK308681|SIRT3|23410|sirtuin 3##NM_002817|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##NM_175932|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF479748|NLRP6|171389|NLR family, pyrin domain containing 6##AY154461|NLRP6|171389|NLR family, pyrin domain containing 6##NM_138329|NLRP6|171389|NLR family, pyrin domain containing 6##AK074155|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##NM_025092|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC066641|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC150562|IFITM5|387733|interferon induced transmembrane protein 5##BC150563|IFITM5|387733|interferon induced transmembrane protein 5##NM_001025295|IFITM5|387733|interferon induced transmembrane protein 5	0.98893	0.0	denovo_WM_7:32:0.976
chr5	131808691	131808818	reg1002164.p1	9.252	+	TSC_hg19_v1_chr5_+_131746621 AK096941 AK309191 AK128882	-62126	+	TSC_hg19_v1_chr5_+_131705407 NM_003060 AF057164 BC012325 AB015050 AK313230 CU680286 DQ893671 DQ895818 AB291606	-103246	+	BX538252 TSC_hg19_v1_chr5_-_131705330	-103455	-	X14454 BC009483 AK298770 AK314025 NM_002198 TSC_hg19_v1_chr5_-_131826466	17727	-	AB591005 BC066279 BC066280 BC066281 BC066282 BC069137 NM_000879 X04688 X12705	70438	-	TSC_hg19_v1_chr5_+_131892670 NM_005732 BC140005 U63139 AK290597 BC108282 AF057299 AF057300 BC062603 BC073850 BC136436	83886	+	AK096941|C5orf56|441108|chromosome 5 open reading frame 56##AK309191|C5orf56|441108|chromosome 5 open reading frame 56##AK128882|C5orf56|441108|chromosome 5 open reading frame 56##NM_003060|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AF057164|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC012325|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB015050|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK313230|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ893671|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ895818|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB291606|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BX538252|LOC553103|553103|uncharacterized LOC553103##X14454|IRF1|3659|interferon regulatory factor 1##BC009483|IRF1|3659|interferon regulatory factor 1##AK298770|IRF1|3659|interferon regulatory factor 1##AK314025|IRF1|3659|interferon regulatory factor 1##NM_002198|IRF1|3659|interferon regulatory factor 1##BC066279|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066280|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066281|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066282|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC069137|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_000879|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X04688|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X12705|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_005732|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC140005|RAD50|10111|RAD50 homolog (S. cerevisiae)##U63139|RAD50|10111|RAD50 homolog (S. cerevisiae)##AK290597|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC108282|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057299|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057300|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC062603|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC073850|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC136436|RAD50|10111|RAD50 homolog (S. cerevisiae)	1.106941	0.0	
chr19	8361713	8361845	reg1002938.p1	9.245	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-87531	+	AB384635 AB053450 BC153882 NM_032447	-149404	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-243832	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	11430	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	24478	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	24507	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.993338	0.0	denovo_WM_7:-43:0.813
chr13	43571708	43571849	reg1002862.p1	9.244	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	-5408	-	NM_182508 AK310859 AK098238 BC093659 BC112237	-216054	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	-423444	+	AF126743 AY248898 NM_013238	25571	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	25924	+	BC024178 NM_001127615	631832	-	DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC024178|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001127615|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1	0.997062	0.0	denovo_WM_7:32:0.658	denovo_WM_7:33:0.255
chr7	7800954	7801098	reg1003181.p1	9.244	+	BC009868 NM_002947	-42789	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-120653	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-120939	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	207407	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	500690	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	500765	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.902294	0.996553	denovo_WM_7:-24:0.807	CTCF.p2:66:0.997
chr1	37759242	37759369	reg1002235.p1	9.243	+	AJ299451 U16127 AJ249210 TSC_hg19_v1_chr1_-_37499794 NM_000831	-259530	-	NM_000760 NM_156039 NM_172313	-810391	-	BC040954 TSC_hg19_v1_chr1_-_36948515 AK307242 X55720 X55721 M59818 M59819 M59820 BC053585	-810821	-	TSC_hg19_v1_chr1_+_37940118 NM_025079	180792	+	TSC_hg19_v1_chr1_+_37940140 AK026884	180845	+	FJ695517 TSC_hg19_v1_chr1_+_37940180 AK093343 AX748065 BC005001	180882	+	AJ299451|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##U16127|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##AJ249210|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##NM_000831|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##NM_000760|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_156039|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_172313|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##BC040954|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##AK307242|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55720|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55721|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59818|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59819|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59820|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##BC053585|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_025079|ZC3H12A|80149|zinc finger CCCH-type containing 12A##AK026884|ZC3H12A|80149|zinc finger CCCH-type containing 12A##FJ695517|ZC3H12A|80149|zinc finger CCCH-type containing 12A##AK093343|ZC3H12A|80149|zinc finger CCCH-type containing 12A##BC005001|ZC3H12A|80149|zinc finger CCCH-type containing 12A	0.999132	0.0	denovo_WM_7:40:0.239	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239	denovo_WM_7:43:0.239
chr2	103366510	103366655	reg1002940.p1	9.243	+	TSC_hg19_v1_chr2_+_103353393 AL832688 AK054856 BC107694 BC073844	-13200	+	AK290589 AK075376 BC006242 TSC_hg19_v1_chr2_-_103353338 AK307178 NM_032718 AK296768	-13249	-	BC136377 BC136378 BC035787 NM_003048 AF073299	-130399	+	CR936735 NM_144632 CR936731 CR936732 AK129862 BC130306 BC130308 HQ258113	12000	+	TSC_hg19_v1_chr2_-_105467912 AK096498	2101334	-	TSC_hg19_v1_chr2_+_105471877 NM_006236	2105316	+	AL832688|TMEM182|130827|transmembrane protein 182##AK054856|TMEM182|130827|transmembrane protein 182##BC107694|TMEM182|130827|transmembrane protein 182##BC073844|TMEM182|130827|transmembrane protein 182##AK290589|MFSD9|84804|major facilitator superfamily domain containing 9##AK075376|MFSD9|84804|major facilitator superfamily domain containing 9##BC006242|MFSD9|84804|major facilitator superfamily domain containing 9##AK307178|MFSD9|84804|major facilitator superfamily domain containing 9##NM_032718|MFSD9|84804|major facilitator superfamily domain containing 9##AK296768|MFSD9|84804|major facilitator superfamily domain containing 9##BC136377|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##BC136378|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##BC035787|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##NM_003048|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##AF073299|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##CR936735|TMEM182|130827|transmembrane protein 182##NM_144632|TMEM182|130827|transmembrane protein 182##CR936731|TMEM182|130827|transmembrane protein 182##CR936732|TMEM182|130827|transmembrane protein 182##AK129862|TMEM182|130827|transmembrane protein 182##BC130306|TMEM182|130827|transmembrane protein 182##BC130308|TMEM182|130827|transmembrane protein 182##HQ258113|TMEM182|130827|transmembrane protein 182##AK096498|LOC100506421|100506421|uncharacterized LOC100506421##NM_006236|POU3F3|5455|POU class 3 homeobox 3	0.0	0.0	
chr2	73830513	73830656	reg1003135.p1	9.243	+	TSC_hg19_v1_chr2_+_73613119 AJ417593 AX751581 NM_015120	-217526	+	AB463596 BC136252 BC143379 X60104 BC034462 TSC_hg19_v1_chr2_-_73520677 NM_001965 AK314154	-309944	-	AB075820 TSC_hg19_v1_chr2_-_73496671 NM_001080410	-333908	-	AB019551 BC012626 AF187813 NM_003960	38930	-	AF185571 BC069564 BC121101 BC121102 NM_016347	97882	-	TSC_hg19_v1_chr2_-_73964473 AK291071 AF060921 AK097254 AY643713 BC029492 AK295239 AF151879 NM_016058	133887	-	AJ417593|ALMS1|7840|Alstrom syndrome 1##AX751581|ALMS1|7840|Alstrom syndrome 1##NM_015120|ALMS1|7840|Alstrom syndrome 1##BC136252|EGR4|1961|early growth response 4##BC143379|EGR4|1961|early growth response 4##X60104|EGR4|1961|early growth response 4##BC034462|EGR4|1961|early growth response 4##NM_001965|EGR4|1961|early growth response 4##AK314154|EGR4|1961|early growth response 4##AB075820|FBXO41|150726|F-box protein 41##NM_001080410|FBXO41|150726|F-box protein 41##AB019551|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##BC012626|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##AF187813|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##NM_003960|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##AF185571|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##BC069564|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##BC121101|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##BC121102|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##NM_016347|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##AK291071|TPRKB|51002|TP53RK binding protein##AF060921|TPRKB|51002|TP53RK binding protein##AK097254|TPRKB|51002|TP53RK binding protein##AY643713|TPRKB|51002|TP53RK binding protein##BC029492|TPRKB|51002|TP53RK binding protein##AK295239|TPRKB|51002|TP53RK binding protein##AF151879|TPRKB|51002|TP53RK binding protein##NM_016058|TPRKB|51002|TP53RK binding protein	0.973493	0.0	denovo_WM_7:3:0.878
chr22	50730799	50730926	reg1001841.p1	9.241	+	TSC_hg19_v1_chr22_-_50720982 AK056543	-9887	-	TSC_hg19_v1_chr22_-_50720334 AK074932 AK126394	-10514	-	AF001008 CU013114 CU013402 AB463125 DQ891728 DQ894905 CR456514 U92268 AF001174 Y14440 AF031135 U53442 AK291845 BC027933 NM_002751 AK299745	-22106	-	NM_012401	15138	-	AK054743 AK022407 BC031069 NM_001001794	34584	-	TSC_hg19_v1_chr22_+_50781755 NM_001242898 NM_001242899 NM_001242900 NM_014678 BC032664 BC006568 BC052995	50881	+	AK056543|PLXNB2|23654|plexin B2##AK074932|PLXNB2|23654|plexin B2##AK126394|PLXNB2|23654|plexin B2##AF001008|MAPK11|5600|mitogen-activated protein kinase 11##CU013114|MAPK11|5600|mitogen-activated protein kinase 11##CU013402|MAPK11|5600|mitogen-activated protein kinase 11##DQ891728|MAPK11|5600|mitogen-activated protein kinase 11##DQ894905|MAPK11|5600|mitogen-activated protein kinase 11##CR456514|MAPK11|5600|mitogen-activated protein kinase 11##U92268|MAPK11|5600|mitogen-activated protein kinase 11##AF001174|MAPK11|5600|mitogen-activated protein kinase 11##Y14440|MAPK11|5600|mitogen-activated protein kinase 11##AF031135|MAPK11|5600|mitogen-activated protein kinase 11##U53442|MAPK11|5600|mitogen-activated protein kinase 11##AK291845|MAPK11|5600|mitogen-activated protein kinase 11##BC027933|MAPK11|5600|mitogen-activated protein kinase 11##NM_002751|MAPK11|5600|mitogen-activated protein kinase 11##AK299745|MAPK11|5600|mitogen-activated protein kinase 11##NM_012401|PLXNB2|23654|plexin B2##AK054743|FAM116B|414918|family with sequence similarity 116, member B##BC031069|FAM116B|414918|family with sequence similarity 116, member B##NM_001001794|FAM116B|414918|family with sequence similarity 116, member B##NM_001242898|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242899|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242900|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_014678|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC032664|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC006568|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC052995|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2	0.999607	0.0	
chr15	96041957	96042129	reg1002899.p1	9.239	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-171724	-	NM_001159644 BC025708 BC111024 AK002037	-1142734	+	NM_001159643 NM_018349 AY656717 BC131527	-1200582	+	BC106083 NM_001145155 FM208183	827118	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	831934	+	AK316086 NM_001145156	833750	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.998594	0.0	
chr5	107428979	107429094	reg1002084.p2	9.239	+	AK308672 NM_001962 U26403	-422446	-	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4530555	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4834579	+	TSC_hg19_v1_chr5_-_107717106 AK126722	288094	-	BC063316 NM_001163315	288762	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	634944	-	AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AB593118|HP07349|100652853|uncharacterized protein HP07349	0.988885	0.442333	CTCF.p2:5:0.442	denovo_WM_7:-47:0.532	denovo_WM_7:-48:0.457
chr11	62691611	62691791	reg1001987.p1	9.237	+	BC022984 NM_000738 AJ006520 TSC_hg19_v1_chr11_-_62689135	-2628	-	BC007740 AK312374 TSC_hg19_v1_chr11_-_62688827	-2918	-	TSC_hg19_v1_chr11_+_62649170 AK308797 AK311592 AF055031	-42509	+	AK298374 AF057039 AF104038 AF124373 AB009698 AB009697 AK091879 BC033682 AK055764 NM_004790 NM_153276 NM_153277 NM_153278	60731	-	AK307850 AK298341 AB042505 AK298351 AK313187 BC022387 NM_001184732 NM_001184733 NM_001184736 NM_004254	91597	-	BC034394 NM_001136506	219991	-	BC022984|CHRM1|1128|cholinergic receptor, muscarinic 1##NM_000738|CHRM1|1128|cholinergic receptor, muscarinic 1##AJ006520|CHRM1|1128|cholinergic receptor, muscarinic 1##BC007740|CHRM1|1128|cholinergic receptor, muscarinic 1##AK312374|CHRM1|1128|cholinergic receptor, muscarinic 1##AK308797|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK311592|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AF055031|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK298374|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF057039|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF104038|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF124373|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AB009698|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AB009697|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK091879|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##BC033682|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK055764|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_004790|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153276|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153277|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153278|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK307850|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298341|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AB042505|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298351|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK313187|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##BC022387|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184732|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184733|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184736|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_004254|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##BC034394|SLC22A24|283238|solute carrier family 22, member 24##NM_001136506|SLC22A24|283238|solute carrier family 22, member 24	0.995965	0.0	denovo_WM_7:23:0.315	denovo_WM_7:24:0.315	denovo_WM_7:25:0.315
chr1	27611232	27611370	reg1002399.p2	9.237	+	TSC_hg19_v1_chr1_+_27561153 BC032523	-50139	+	TSC_hg19_v1_chr1_+_27561124 AK315564	-50174	+	NM_015023 TSC_hg19_v1_chr1_+_27561056	-50267	+	TSC_hg19_v1_chr1_+_27648669 NM_032125 AK313110 AK303821	37350	+	AL136683 BC011579 BC090039 TSC_hg19_v1_chr1_+_27648745	37432	+	TSC_hg19_v1_chr1_+_27648756 EU831420 EU831513 AF251699 AK222642 AK307077 BX648289	37515	+	BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_032125|TMEM222|84065|transmembrane protein 222##AK313110|TMEM222|84065|transmembrane protein 222##AK303821|TMEM222|84065|transmembrane protein 222##AL136683|TMEM222|84065|transmembrane protein 222##BC011579|TMEM222|84065|transmembrane protein 222##BC090039|TMEM222|84065|transmembrane protein 222##EU831420|TMEM222|84065|transmembrane protein 222##EU831513|TMEM222|84065|transmembrane protein 222##AF251699|TMEM222|84065|transmembrane protein 222##AK222642|TMEM222|84065|transmembrane protein 222##AK307077|TMEM222|84065|transmembrane protein 222##BX648289|LOC644961|644961|actin, beta pseudogene	0.990362	0.847061	denovo_WM_7:-34:0.571	denovo_WM_7:-35:0.369	CTCF.p2:48:0.847
chr8	37639319	37639441	reg1002674.p1	9.235	+	TSC_hg19_v1_chr8_+_37620162 AK291135 CR533532 EU831636 EU831720	-19204	+	TSC_hg19_v1_chr8_+_37620124 AL136616	-19258	+	NM_007198 TSC_hg19_v1_chr8_+_37620111 BC012334 AK021923	-19271	+	TSC_hg19_v1_chr8_+_37654400 AK027296 NM_032777	15019	+	TSC_hg19_v1_chr8_+_37654406 AB040964 BC146774 AY090637	15045	+	TSC_hg19_v1_chr8_+_37654778 AF378755 AB385479 AY181242	15402	+	AK291135|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##CR533532|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831636|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831720|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AL136616|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##NM_007198|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##BC012334|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK021923|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK027296|GPR124|25960|G protein-coupled receptor 124##NM_032777|GPR124|25960|G protein-coupled receptor 124##AB040964|GPR124|25960|G protein-coupled receptor 124##BC146774|GPR124|25960|G protein-coupled receptor 124##AY090637|GPR124|25960|G protein-coupled receptor 124##AF378755|GPR124|25960|G protein-coupled receptor 124##AY181242|GPR124|25960|G protein-coupled receptor 124	0.849692	0.0	denovo_WM_7:24:0.280	denovo_WM_7:25:0.480
chr15	91566020	91566200	reg1001330.p2	9.233	+	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	-340	-	CU677627 TSC_hg19_v1_chr15_-_91565525	-608	-	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	-28344	-	NM_001167580 TSC_hg19_v1_chr15_+_91643185 AK294902	77099	+	TSC_hg19_v1_chr15_+_91643505 NM_014848 BC030011	77376	+	TSC_hg19_v1_chr15_+_91643558 AF052188	77449	+	BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##NM_001167580|SV2B|9899|synaptic vesicle glycoprotein 2B##AK294902|SV2B|9899|synaptic vesicle glycoprotein 2B##NM_014848|SV2B|9899|synaptic vesicle glycoprotein 2B##BC030011|SV2B|9899|synaptic vesicle glycoprotein 2B##AF052188|SV2B|9899|synaptic vesicle glycoprotein 2B	1.630567	0.0	
chr3	45946536	45946683	reg1002663.p2	9.232	+	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	-18554	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-63014	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-108461	-	NM_006564 Y13248	38363	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	90712	-	AB189434 AB189435 NM_001024644 NM_005283	122369	-	NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1	0.0	0.0	
chr16	53160411	53160541	reg1001986.p1	9.229	+	TSC_hg19_v1_chr16_+_53133091 AK092208 AX747409 BC033770	-27377	+	TSC_hg19_v1_chr16_+_53088951 AY647157 BC022889 NM_025134	-71595	+	AK299202 NM_001146188	-578763	-	TSC_hg19_v1_chr16_+_53164923 DQ333316	4584	+	NM_001207030	244564	-	TSC_hg19_v1_chr16_+_53468350 NM_005611	307876	+	AK092208|CHD9|80205|chromodomain helicase DNA binding protein 9##BC033770|CHD9|80205|chromodomain helicase DNA binding protein 9##AY647157|CHD9|80205|chromodomain helicase DNA binding protein 9##BC022889|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_025134|CHD9|80205|chromodomain helicase DNA binding protein 9##AK299202|TOX3|27324|TOX high mobility group box family member 3##NM_001146188|TOX3|27324|TOX high mobility group box family member 3##DQ333316|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_001207030|LOC643802|643802|u3 small nucleolar ribonucleoprotein protein MPP10-like##NM_005611|RBL2|5934|retinoblastoma-like 2 (p130)	0.998156	0.0	
chr19	36681470	36681576	reg1002962.p2	9.226	+	BC002757 NM_001864	-37753	-	TSC_hg19_v1_chr19_+_36631899 CU680106 BT009775	-49338	+	TSC_hg19_v1_chr19_+_36631021 BC000592 BC011903 BC064998 BC017308 AY007141 BC023643 BC021933	-50490	+	BC068453 NM_152477 AK308212	24038	-	NM_001099638 NM_001099639 NM_007145 TSC_hg19_v1_chr19_+_36705624	24051	+	AK094310 NM_001042474	24460	-	BC002757|COX7A1|1346|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)##NM_001864|COX7A1|1346|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)##BT009775|CAPNS1|826|calpain, small subunit 1##BC000592|CAPNS1|826|calpain, small subunit 1##BC011903|CAPNS1|826|calpain, small subunit 1##BC064998|CAPNS1|826|calpain, small subunit 1##BC017308|CAPNS1|826|calpain, small subunit 1##AY007141|CAPNS1|826|calpain, small subunit 1##BC023643|CAPNS1|826|calpain, small subunit 1##BC021933|CAPNS1|826|calpain, small subunit 1##BC068453|ZNF565|147929|zinc finger protein 565##NM_152477|ZNF565|147929|zinc finger protein 565##AK308212|ZNF565|147929|zinc finger protein 565##NM_001099638|ZNF146|7705|zinc finger protein 146##NM_001099639|ZNF146|7705|zinc finger protein 146##NM_007145|ZNF146|7705|zinc finger protein 146##AK094310|ZNF565|147929|zinc finger protein 565##NM_001042474|ZNF565|147929|zinc finger protein 565	1.326918	0.704993	CTCF.p2:5:0.705	denovo_WM_7:-23:0.814	denovo_WM_7:-38:0.336
chr22	35767623	35767752	reg1003007.p1	9.222	+	TSC_hg19_v1_chr22_+_35695886 AK097066 AK297827 AK295918 AK296670 AK314522 AK097926 CR456595 BC005144 BC040006 BC046151 AB463301 CU013195 CU013483 CU692314	-71791	+	TSC_hg19_v1_chr22_+_35695855 NM_001135730 NM_001135732 NM_005488 AK026576 AJ006973 AY358980	-71856	+	AK293694 NM_001135729	-72420	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	9381	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	9439	+	AF051791 TSC_hg19_v1_chr22_+_35779219	11475	+	AK097066|TOM1|10043|target of myb1 (chicken)##AK297827|TOM1|10043|target of myb1 (chicken)##AK295918|TOM1|10043|target of myb1 (chicken)##AK296670|TOM1|10043|target of myb1 (chicken)##AK314522|TOM1|10043|target of myb1 (chicken)##AK097926|TOM1|10043|target of myb1 (chicken)##CR456595|TOM1|10043|target of myb1 (chicken)##BC040006|TOM1|10043|target of myb1 (chicken)##BC046151|TOM1|10043|target of myb1 (chicken)##CU013195|TOM1|10043|target of myb1 (chicken)##CU013483|TOM1|10043|target of myb1 (chicken)##NM_001135730|TOM1|10043|target of myb1 (chicken)##NM_001135732|TOM1|10043|target of myb1 (chicken)##NM_005488|TOM1|10043|target of myb1 (chicken)##AK026576|TOM1|10043|target of myb1 (chicken)##AJ006973|TOM1|10043|target of myb1 (chicken)##AY358980|TOM1|10043|target of myb1 (chicken)##AK293694|TOM1|10043|target of myb1 (chicken)##NM_001135729|TOM1|10043|target of myb1 (chicken)##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##AF051791|HMOX1|3162|heme oxygenase (decycling) 1	0.999414	0.0	
chr10	94025507	94025683	reg1002993.p1	9.221	+	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-22576	-	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-341903	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-342079	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	25241	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	25459	+	AK302578 AK093287 AK316407 AX748033 NM_001165946	231898	-	AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme	1.95919	0.0	denovo_WM_7:-39:0.203	denovo_WM_7:-40:0.523	denovo_WM_7:-79:0.692
chr18	38150711	38150866	reg1002623.p2	9.221	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-770520	-	TSC_hg19_v1_chr18_-_36915657 D28405	-1235132	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-3004789	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	1384411	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	1384445	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	2544781	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.076923	0.0	
chr11	103742948	103743082	reg1002681.p2	9.220	+	TSC_hg19_v1_chr11_+_102980188 AK125524 NM_001080463 NM_001377 AB231766 AB463019	-762816	+	TSC_hg19_v1_chr11_-_102962907 AK298227 NM_032299	-780092	-	AY364246 BC021074 TSC_hg19_v1_chr11_-_102962883 AK056993 BC004169	-780274	-	NM_001001711 AF429971 AK093336 AX748060 BC022018 BC022017 BC021710 BC021172	164323	+	AY359116 AY027517 AY027518 TSC_hg19_v1_chr11_-_104034843 AF113216 AB033832 AF336376 AK292801	291779	-	TSC_hg19_v1_chr11_-_104035039 NM_025208 NM_033135	292025	-	AK125524|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##NM_001080463|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##NM_001377|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##AB231766|DYNC2H1|79659|dynein, cytoplasmic 2, heavy chain 1##AK298227|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##NM_032299|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AY364246|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC021074|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AK056993|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC004169|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##NM_001001711|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##AF429971|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##AK093336|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC022018|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC022017|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC021710|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##BC021172|DDI1|414301|DNA-damage inducible 1 homolog 1 (S. cerevisiae)##AY359116|PDGFD|80310|platelet derived growth factor D##AY027517|PDGFD|80310|platelet derived growth factor D##AY027518|PDGFD|80310|platelet derived growth factor D##AF113216|PDGFD|80310|platelet derived growth factor D##AB033832|PDGFD|80310|platelet derived growth factor D##AF336376|PDGFD|80310|platelet derived growth factor D##AK292801|PDGFD|80310|platelet derived growth factor D##NM_025208|PDGFD|80310|platelet derived growth factor D##NM_033135|PDGFD|80310|platelet derived growth factor D	0.999918	0.0	
chr18	9673225	9673364	reg1002598.p1	9.220	+	AK027064 TSC_hg19_v1_chr18_-_9614566 BC060829 AK315106 AF111106 NM_001042388 NM_005134	-58717	-	TSC_hg19_v1_chr18_-_9614547 AF200478 AK293869 AK292538	-58790	-	TSC_hg19_v1_chr18_+_9475545 NM_006788 BC013126	-197697	+	TSC_hg19_v1_chr18_+_9708217 AF234995 NM_006868	34915	+	AK314809 TSC_hg19_v1_chr18_+_9708269	34976	+	TSC_hg19_v1_chr18_+_9708299 BC001148	35008	+	AK027064|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##BC060829|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AK315106|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AF111106|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##NM_001042388|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##NM_005134|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AF200478|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AK293869|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AK292538|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##NM_006788|RALBP1|10928|ralA binding protein 1##BC013126|RALBP1|10928|ralA binding protein 1##AF234995|RAB31|11031|RAB31, member RAS oncogene family##NM_006868|RAB31|11031|RAB31, member RAS oncogene family##AK314809|RAB31|11031|RAB31, member RAS oncogene family##BC001148|RAB31|11031|RAB31, member RAS oncogene family	0.994571	0.0	
chr19	8346859	8346990	reg1002034.p1	9.219	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-72676	+	AB384635 AB053450 BC153882 NM_032447	-134549	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-228977	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	26285	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	39333	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	39362	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.993338	0.0	denovo_WM_7:-41:0.813
chr22	43543231	43543380	reg1003158.p1	9.218	+	NM_014507 NM_173467 TSC_hg19_v1_chr22_-_43539405	-3902	-	TSC_hg19_v1_chr22_-_43539392 BC042195	-3913	-	TSC_hg19_v1_chr22_-_43539355 BC030985 AL359401 AL359403 AK314059	-3953	-	TSC_hg19_v1_chr22_+_43547546 NM_000714 NM_007311 L21950	4235	+	TSC_hg19_v1_chr22_+_43547578 BC001110 M36035	4271	+	D63487 AL590888 CT841516 TSC_hg19_v1_chr22_-_43583100 BC001070	39789	-	NM_014507|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##NM_173467|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##BC042195|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##BC030985|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359401|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359403|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AK314059|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##NM_000714|TSPO|706|translocator protein (18kDa)##NM_007311|TSPO|706|translocator protein (18kDa)##L21950|TSPO|706|translocator protein (18kDa)##BC001110|TSPO|706|translocator protein (18kDa)##M36035|TSPO|706|translocator protein (18kDa)##D63487|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##AL590888|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##CT841516|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##BC001070|TTLL12|23170|tubulin tyrosine ligase-like family, member 12	1.106219	0.0	
chr8	142128355	142128521	reg1002557.p1	9.216	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	-117182	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-482814	-	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-606875	+	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	10299	+	AK128212 NM_001080431	110234	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	135752	-	AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4	0.996624	0.0	
chr3	112192322	112192462	reg1003378.p1	9.214	+	AL832529 AK129797 AK293399 BC031103 TSC_hg19_v1_chr3_+_112052024 AK074972	-140368	+	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	-140434	+	BC044801 NM_183061 AK128084	-179304	-	AK292692 NM_001085357 NM_181780	26003	-	AK307432 AB079384 CU692886 DQ893424 DQ896774 AF202092 TSC_hg19_v1_chr3_-_112280499 BC024221 NM_022488 AL137515	88050	-	TSC_hg19_v1_chr3_-_112280761 BC002830	88369	-	AL832529|CD200|4345|CD200 molecule##AK129797|CD200|4345|CD200 molecule##AK293399|CD200|4345|CD200 molecule##BC031103|CD200|4345|CD200 molecule##AK074972|CD200|4345|CD200 molecule##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK292692|BTLA|151888|B and T lymphocyte associated##NM_001085357|BTLA|151888|B and T lymphocyte associated##NM_181780|BTLA|151888|B and T lymphocyte associated##AK307432|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AB079384|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ893424|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ896774|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AF202092|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC024221|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##NM_022488|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AL137515|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC002830|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)	1.453361	0.0	
chr3	95075676	95075822	reg1002688.p1	9.214	+	AK122674 NM_001195643	-1293683	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-1293905	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-1294005	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	1457681	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	2082722	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	2407851	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.972843	0.0	denovo_WM_7:-7:0.275	denovo_WM_7:-8:0.680
chr5	147184764	147184910	reg1002932.p1	9.214	+	TSC_hg19_v1_chr5_-_147162292 AK299724	-22532	-	AF273057 NM_014790 TSC_hg19_v1_chr5_-_147162254	-22583	-	BC017354 TSC_hg19_v1_chr5_-_147162218	-22634	-	DQ893613 DQ896842 AB464195 BC025790 TSC_hg19_v1_chr5_-_147211177 Y00705	26333	-	TSC_hg19_v1_chr5_-_147211236 NM_003122	26410	-	BC024232 NM_054023 AF439545 AY358979 AF313455 AB590291 DQ893093 DQ896365	73482	+	AK299724|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AF273057|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##NM_014790|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##BC017354|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##DQ893613|SPINK1|6690|serine peptidase inhibitor, Kazal type 1##DQ896842|SPINK1|6690|serine peptidase inhibitor, Kazal type 1##BC025790|SPINK1|6690|serine peptidase inhibitor, Kazal type 1##Y00705|SPINK1|6690|serine peptidase inhibitor, Kazal type 1##NM_003122|SPINK1|6690|serine peptidase inhibitor, Kazal type 1##BC024232|SCGB3A2|117156|secretoglobin, family 3A, member 2##NM_054023|SCGB3A2|117156|secretoglobin, family 3A, member 2##AF439545|SCGB3A2|117156|secretoglobin, family 3A, member 2##AY358979|SCGB3A2|117156|secretoglobin, family 3A, member 2##AF313455|SCGB3A2|117156|secretoglobin, family 3A, member 2##DQ893093|SCGB3A2|117156|secretoglobin, family 3A, member 2##DQ896365|SCGB3A2|117156|secretoglobin, family 3A, member 2	0.996977	0.0	denovo_WM_7:0:0.424	denovo_WM_7:1:0.424
chr8	65776478	65776615	reg1003388.p2	9.213	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	-65267	-	TSC_hg19_v1_chr8_+_65493611 AK091333	-282882	+	NM_152414 AK293979	-283688	+	TSC_hg19_v1_chr8_-_66546394 AK001373	769849	-	TSC_hg19_v1_chr8_-_66546404 AK304463	769860	-	TSC_hg19_v1_chr8_-_66546413 BC011607 BC018846 NM_018120	769886	-	BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1##BC011607|ARMC1|55156|armadillo repeat containing 1##BC018846|ARMC1|55156|armadillo repeat containing 1##NM_018120|ARMC1|55156|armadillo repeat containing 1	0.0	0.0	
chr1	230345545	230345691	reg1002561.p3	9.210	+	TSC_hg19_v1_chr1_+_230203016 AK296886 AK290048 AK304029 AB591001 X85019	-142622	+	TSC_hg19_v1_chr1_+_230202957 BC041120 NM_004481	-142676	+	TSC_hg19_v1_chr1_+_229761993 BC114559 BC114963	-583604	+	BC150638 NM_024554	167772	-	TSC_hg19_v1_chr1_+_230778205 NM_001145036 NM_007357	432578	+	TSC_hg19_v1_chr1_+_230778250 AL832190 BC014960 AK302791	432615	+	AK296886|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK290048|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK304029|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##X85019|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC041120|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##NM_004481|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC114559|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC114963|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC150638|PGBD5|79605|piggyBac transposable element derived 5##NM_024554|PGBD5|79605|piggyBac transposable element derived 5##NM_001145036|COG2|22796|component of oligomeric golgi complex 2##NM_007357|COG2|22796|component of oligomeric golgi complex 2##AL832190|COG2|22796|component of oligomeric golgi complex 2##BC014960|COG2|22796|component of oligomeric golgi complex 2##AK302791|COG2|22796|component of oligomeric golgi complex 2	0.996942	0.0	denovo_WM_7:-40:0.841
chr20	46068868	46069048	reg1002848.p2	9.210	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-83470	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-92311	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-141389	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	61664	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	61726	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	345794	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.994293	0.0	
chr4	84177616	84177771	reg1003100.p1	9.210	+	TSC_hg19_v1_chr4_-_84035912 AK000140 NM_001130715 NM_016619	-141766	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	-141802	-	BC012205 NM_001130716	-146690	-	TSC_hg19_v1_chr4_-_84205924 DQ895928 EU176380 BC008804 AK023076	28222	-	TSC_hg19_v1_chr4_-_84205952 AK129583 AK300972 BC020728 AJ621061 NM_015697	28310	-	AJ627581 TSC_hg19_v1_chr4_-_84255962 AF084467 AM419200 AY948074 CU690802 AF152376 NM_001199830 AF165154 AK075400	78253	-	AK000140|PLAC8|51316|placenta-specific 8##NM_001130715|PLAC8|51316|placenta-specific 8##NM_016619|PLAC8|51316|placenta-specific 8##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8##BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##DQ895928|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##EU176380|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC008804|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK023076|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK129583|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK300972|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC020728|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AJ621061|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##NM_015697|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AF084467|HPSE|10855|heparanase##AM419200|HPSE|10855|heparanase##AY948074|HPSE|10855|heparanase##AF152376|HPSE|10855|heparanase##NM_001199830|HPSE|10855|heparanase##AF165154|HPSE|10855|heparanase##AK075400|HPSE|10855|heparanase	0.998994	0.0	denovo_WM_7:31:0.310	denovo_WM_7:32:0.310	denovo_WM_7:33:0.310
chr17	66031439	66031563	reg1000141.p1	9.206	+	BC105124 BC112073 BC036760 TSC_hg19_v1_chr17_-_65989703 AK026583 NM_181655 NM_181656	-41828	-	TSC_hg19_v1_chr17_+_65936590 AK027184	-94867	+	AK022570 TSC_hg19_v1_chr17_+_65916176	-115332	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	339	+	TSC_hg19_v1_chr17_+_66031889 BC034443	387	+	TSC_hg19_v1_chr17_+_66097706 BC045718	66197	+	BC105124|C17orf58|284018|chromosome 17 open reading frame 58##BC112073|C17orf58|284018|chromosome 17 open reading frame 58##BC036760|C17orf58|284018|chromosome 17 open reading frame 58##AK026583|C17orf58|284018|chromosome 17 open reading frame 58##NM_181655|C17orf58|284018|chromosome 17 open reading frame 58##NM_181656|C17orf58|284018|chromosome 17 open reading frame 58##AK027184|BPTF|2186|bromodomain PHD finger transcription factor##AK022570|BPTF|2186|bromodomain PHD finger transcription factor##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC045718|LOC100499466|100499466|uncharacterized LOC100499466	0.0	0.0	
chr20	7356648	7356821	reg1002796.p2	9.205	+	BC069214 NM_001200	-607990	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-1252571	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-1252857	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	564368	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	643566	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	643673	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.994028	0.57276	denovo_WM_7:-13:0.239	denovo_WM_7:-14:0.239	denovo_WM_7:-15:0.239	denovo_WM_7:-16:0.239	CTCF.p2:31:0.573
chr5	172484758	172484924	reg1002664.p2	9.205	+	TSC_hg19_v1_chr5_+_172484383 AK297424	-458	+	TSC_hg19_v1_chr5_+_172483354 BX647768 NM_001168393 NM_001168394 NM_153607 AK300043 AY139008 BC041709 AY174896 AK124117 BX647573 AK291677	-1457	+	TSC_hg19_v1_chr5_+_172410833 CR456856 CR542131	-73997	+	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	86655	+	AB021133 CU693024 AB464641 DQ893313 DQ894104 DQ896627 BC025711 AK290615 AK307249 AK297844 AK307218 AK309495 U34962 AK307247 NM_001166175 NM_001166176 NM_004387	177358	-	AF031036 BT019591 CR541825 CU674324 EU832632 EU832707 BC006352 BC013958 TSC_hg19_v1_chr5_-_172755285 AF055460 AB012664 AF098462	270421	-	AK297424|C5orf41|153222|chromosome 5 open reading frame 41##BX647768|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168393|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168394|C5orf41|153222|chromosome 5 open reading frame 41##NM_153607|C5orf41|153222|chromosome 5 open reading frame 41##AK300043|C5orf41|153222|chromosome 5 open reading frame 41##AY139008|C5orf41|153222|chromosome 5 open reading frame 41##BC041709|C5orf41|153222|chromosome 5 open reading frame 41##AY174896|C5orf41|153222|chromosome 5 open reading frame 41##AK124117|C5orf41|153222|chromosome 5 open reading frame 41##BX647573|C5orf41|153222|chromosome 5 open reading frame 41##AK291677|C5orf41|153222|chromosome 5 open reading frame 41##CR456856|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR542131|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AB021133|NKX2-5|1482|NK2 homeobox 5##DQ893313|NKX2-5|1482|NK2 homeobox 5##DQ894104|NKX2-5|1482|NK2 homeobox 5##DQ896627|NKX2-5|1482|NK2 homeobox 5##BC025711|NKX2-5|1482|NK2 homeobox 5##AK290615|NKX2-5|1482|NK2 homeobox 5##AK307249|NKX2-5|1482|NK2 homeobox 5##AK297844|NKX2-5|1482|NK2 homeobox 5##AK307218|NKX2-5|1482|NK2 homeobox 5##AK309495|NKX2-5|1482|NK2 homeobox 5##U34962|NKX2-5|1482|NK2 homeobox 5##AK307247|NKX2-5|1482|NK2 homeobox 5##NM_001166175|NKX2-5|1482|NK2 homeobox 5##NM_001166176|NKX2-5|1482|NK2 homeobox 5##NM_004387|NKX2-5|1482|NK2 homeobox 5##AF031036|STC2|8614|stanniocalcin 2##BT019591|STC2|8614|stanniocalcin 2##CR541825|STC2|8614|stanniocalcin 2##EU832632|STC2|8614|stanniocalcin 2##EU832707|STC2|8614|stanniocalcin 2##BC006352|STC2|8614|stanniocalcin 2##BC013958|STC2|8614|stanniocalcin 2##AF055460|STC2|8614|stanniocalcin 2##AB012664|STC2|8614|stanniocalcin 2##AF098462|STC2|8614|stanniocalcin 2	0.992427	0.0	denovo_WM_7:-17:0.756
chr7	21984423	21984603	reg1002718.p2	9.205	+	AJ320497 NM_003777	-401681	+	AB591008 TSC_hg19_v1_chr7_+_21468356	-516189	+	TSC_hg19_v1_chr7_+_21467717 AK289728 AK296749 NM_003112 X68561 BC109300 BC109301	-516694	+	AB463479 AY161168 AY161169 CU691768 CU692942 BC009352 TSC_hg19_v1_chr7_-_21985500 AK095965 BC025242 BC032576 AK300781 BC039823 AK022955 AK292490 NM_001127370 NM_001127371 NM_018719	969	-	AL833195 NM_012294	412008	-	BC066301 TSC_hg19_v1_chr7_-_22539806 AK308991 NM_001164460 NM_207342	555334	-	AJ320497|DNAH11|8701|dynein, axonemal, heavy chain 11##NM_003777|DNAH11|8701|dynein, axonemal, heavy chain 11##AK289728|SP4|6671|Sp4 transcription factor##AK296749|SP4|6671|Sp4 transcription factor##NM_003112|SP4|6671|Sp4 transcription factor##X68561|SP4|6671|Sp4 transcription factor##BC109300|SP4|6671|Sp4 transcription factor##BC109301|SP4|6671|Sp4 transcription factor##AY161168|CDCA7L|55536|cell division cycle associated 7-like##AY161169|CDCA7L|55536|cell division cycle associated 7-like##BC009352|CDCA7L|55536|cell division cycle associated 7-like##AK095965|CDCA7L|55536|cell division cycle associated 7-like##BC025242|CDCA7L|55536|cell division cycle associated 7-like##BC032576|CDCA7L|55536|cell division cycle associated 7-like##AK300781|CDCA7L|55536|cell division cycle associated 7-like##BC039823|CDCA7L|55536|cell division cycle associated 7-like##AK022955|CDCA7L|55536|cell division cycle associated 7-like##AK292490|CDCA7L|55536|cell division cycle associated 7-like##NM_001127370|CDCA7L|55536|cell division cycle associated 7-like##NM_001127371|CDCA7L|55536|cell division cycle associated 7-like##NM_018719|CDCA7L|55536|cell division cycle associated 7-like##AL833195|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##NM_012294|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##BC066301|STEAP1B|256227|STEAP family member 1B##AK308991|STEAP1B|256227|STEAP family member 1B##NM_001164460|STEAP1B|256227|STEAP family member 1B##NM_207342|STEAP1B|256227|STEAP family member 1B	0.998546	0.0	denovo_WM_7:-11:0.890
chr8	28943122	28943302	reg1001827.p1	9.205	+	TSC_hg19_v1_chr8_+_28748135 AY522342 DQ269478 BC069242 NM_024567	-195085	+	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	-195295	+	NM_001145159 NM_018250	-195515	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	177402	-	AL137704 NM_057158	263109	-	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	264858	-	AY522342|HMBOX1|79618|homeobox containing 1##DQ269478|HMBOX1|79618|homeobox containing 1##BC069242|HMBOX1|79618|homeobox containing 1##NM_024567|HMBOX1|79618|homeobox containing 1##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4	1.982291	0.0	denovo_WM_7:17:0.215	denovo_WM_7:18:0.623	denovo_WM_7:33:0.655
chr19	45544480	45544597	reg1002452.p1	9.204	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	-2215	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-39796	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-85884	+	BC019352 NM_145288	35149	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	37975	+	TSC_hg19_v1_chr19_+_45596205 BC035704	51677	+	AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37	0.99911	0.058236	denovo_WM_7:-43:0.310	denovo_WM_7:-44:0.310	denovo_WM_7:-45:0.310
chr19	47704546	47704685	reg1001586.p2	9.203	+	TSC_hg19_v1_chr19_+_47634184 AB385085 DQ891751 DQ894932 CU676224 AF110956 BT007290	-70393	+	TSC_hg19_v1_chr19_+_47634171 BC003611	-70454	+	TSC_hg19_v1_chr19_+_47634145 AK315624 AF090385 AF046025 AK090645	-70476	+	U82987 BC136481 TSC_hg19_v1_chr19_-_47734457 AF332558 NM_014417	29730	-	AB590880 AK298837 AF354654 AF354655 AF354656 NM_001127240 NM_001127241 NM_001127242	31325	-	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	55146	+	DQ891751|SAE1|10055|SUMO1 activating enzyme subunit 1##DQ894932|SAE1|10055|SUMO1 activating enzyme subunit 1##AF110956|SAE1|10055|SUMO1 activating enzyme subunit 1##BT007290|SAE1|10055|SUMO1 activating enzyme subunit 1##BC003611|SAE1|10055|SUMO1 activating enzyme subunit 1##AK315624|SAE1|10055|SUMO1 activating enzyme subunit 1##AF090385|SAE1|10055|SUMO1 activating enzyme subunit 1##AF046025|SAE1|10055|SUMO1 activating enzyme subunit 1##AK090645|SAE1|10055|SUMO1 activating enzyme subunit 1##U82987|BBC3|27113|BCL2 binding component 3##BC136481|BBC3|27113|BCL2 binding component 3##AF332558|BBC3|27113|BCL2 binding component 3##NM_014417|BBC3|27113|BCL2 binding component 3##AK298837|BBC3|27113|BCL2 binding component 3##AF354654|BBC3|27113|BCL2 binding component 3##AF354655|BBC3|27113|BCL2 binding component 3##AF354656|BBC3|27113|BCL2 binding component 3##NM_001127240|BBC3|27113|BCL2 binding component 3##NM_001127241|BBC3|27113|BCL2 binding component 3##NM_001127242|BBC3|27113|BCL2 binding component 3##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9	1.990922	0.0	denovo_WM_7:8:0.916	denovo_WM_7:23:0.947
chr3	93560662	93560813	reg1002942.p2	9.203	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-4403887	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-4404016	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-5361709	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	131939	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	132181	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	138290	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.961398	0.419758	denovo_WM_7:26:0.319	denovo_WM_7:27:0.538	CTCF.p2:-31:0.420
chr9	92515761	92515896	reg1002259.p1	9.198	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	-295847	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-402821	-	BC054500 NM_001142287 NM_006378	-421218	-	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	889291	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	1048208	+	TSC_hg19_v1_chr9_+_93564068 Z29630 BC001645 BC002962	1048239	+	NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase##Z29630|SYK|6850|spleen tyrosine kinase##BC001645|SYK|6850|spleen tyrosine kinase##BC002962|SYK|6850|spleen tyrosine kinase	1.993709	0.0	denovo_WM_7:-15:0.306	denovo_WM_7:-16:0.667	denovo_WM_7:-30:0.269	denovo_WM_7:-31:0.716
chr12	38821467	38821619	reg1002606.p1	9.197	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-110918	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4646070	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4646157	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	477840	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1015456	-	AK314254 NM_005164	1192299	-	NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2	1.986946	0.0	denovo_WM_7:92:0.909
chr12	56223214	56223355	reg1002493.p1	9.197	+	AK057354 BC117146 BC117148 TSC_hg19_v1_chr12_-_56223333 BC050271 AY188447 EF560741	-11	-	TSC_hg19_v1_chr12_+_56211873 AK223180	-11414	+	AF395707 NM_014182 TSC_hg19_v1_chr12_+_56211824 AK314046 AF173375 AF161509	-11497	+	TSC_hg19_v1_chr12_-_56223400 NM_032364	133	-	AK095340 TSC_hg19_v1_chr12_+_56223576	268	+	TSC_hg19_v1_chr12_-_56224312 AK291222	1039	-	AK057354|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117146|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117148|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AY188447|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##EF560741|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AK223180|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF395707|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_014182|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK314046|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF173375|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF161509|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_032364|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AK095340|TMEM198B|440104|transmembrane protein 198B, pseudogene##AK291222|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14	1.989095	0.0	denovo_WM_7:-28:0.633	denovo_WM_7:-29:0.245	denovo_WM_7:-45:0.330	denovo_WM_7:-46:0.330	denovo_WM_7:-47:0.330
chr3	149299076	149299229	reg1003006.p2	9.192	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-106663	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-106750	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-203610	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	76583	-	AK022036 NM_001168278	121907	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	171087	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.994164	0.0	denovo_WM_7:-10:0.535	denovo_WM_7:-11:0.459
chr4	99584662	99584800	reg1002733.p2	9.191	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	-4972	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-402137	+	CU691442 BC036870 NM_174952	-520386	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	265529	-	M15353 TSC_hg19_v1_chr4_-_99850288	265560	-	NM_001130679 NM_001968 BC035166	267055	-	BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E##BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E	0.0	0.0	
chr11	102193460	102193589	reg1002147.p1	9.190	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	-5322	+	NM_001195045 AK316116	-210317	+	TSC_hg19_v1_chr11_+_101981177 AK300414 NM_001130145 NM_001195044 NM_006106 BC038235 AB528588 AB567720 AB567721 AY316529	-212322	+	TSC_hg19_v1_chr11_+_102217944 AK303197	24405	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	24504	+	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	130089	-	NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##NM_001195045|YAP1|10413|Yes-associated protein 1##AK316116|YAP1|10413|Yes-associated protein 1##AK300414|YAP1|10413|Yes-associated protein 1##NM_001130145|YAP1|10413|Yes-associated protein 1##NM_001195044|YAP1|10413|Yes-associated protein 1##NM_006106|YAP1|10413|Yes-associated protein 1##BC038235|YAP1|10413|Yes-associated protein 1##AB567720|YAP1|10413|Yes-associated protein 1##AB567721|YAP1|10413|Yes-associated protein 1##AY316529|YAP1|10413|Yes-associated protein 1##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123	0.999585	0.0	
chr16	81861673	81861853	reg1002723.p1	9.190	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-48833	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-48861	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-48866	+	BC019670 AK315652 AK026740 NM_145168	183305	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	207098	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	207169	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	2.819612	0.0	denovo_WM_7:83:0.340	denovo_WM_7:85:0.310	denovo_WM_7:98:0.416	denovo_WM_7:100:0.304
chr1	20450331	20450470	reg1002256.p1	9.188	+	AB590095 AM392918 AM392954 AM392977 AM393597 AM393824 BC025706 NM_012400 AF112982 AY358606 AK290406 AF188625 AK310156 AK311903 AK301396	-4376	-	TSC_hg19_v1_chr1_+_20396654 NM_000929 BC036792 U03090	-53656	+	BC005919 NM_000300 NM_001161727 NM_001161728	-143481	-	AK093645 AX748240 BX647458 NM_022819 AB528809	15468	+	TSC_hg19_v1_chr1_+_20480706 BC041651	30363	+	NM_001105572	51286	-	AM392918|PLA2G2D|26279|phospholipase A2, group IID##AM392954|PLA2G2D|26279|phospholipase A2, group IID##AM392977|PLA2G2D|26279|phospholipase A2, group IID##AM393597|PLA2G2D|26279|phospholipase A2, group IID##AM393824|PLA2G2D|26279|phospholipase A2, group IID##BC025706|PLA2G2D|26279|phospholipase A2, group IID##NM_012400|PLA2G2D|26279|phospholipase A2, group IID##AF112982|PLA2G2D|26279|phospholipase A2, group IID##AY358606|PLA2G2D|26279|phospholipase A2, group IID##AK290406|PLA2G2D|26279|phospholipase A2, group IID##AF188625|PLA2G2D|26279|phospholipase A2, group IID##AK310156|PLA2G2D|26279|phospholipase A2, group IID##AK311903|PLA2G2D|26279|phospholipase A2, group IID##AK301396|PLA2G2D|26279|phospholipase A2, group IID##NM_000929|PLA2G5|5322|phospholipase A2, group V##BC036792|PLA2G5|5322|phospholipase A2, group V##U03090|PLA2G5|5322|phospholipase A2, group V##BC005919|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_000300|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161727|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161728|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##AK093645|PLA2G2F|64600|phospholipase A2, group IIF##BX647458|PLA2G2F|64600|phospholipase A2, group IIF##NM_022819|PLA2G2F|64600|phospholipase A2, group IIF##NM_001105572|PLA2G2C|391013|phospholipase A2, group IIC	0.993026	0.0	
chr7	949837	949985	reg1003351.p1	9.187	+	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	-33641	+	TSC_hg19_v1_chr7_+_916188 NM_015949	-33708	+	BC142707 NM_001130965 AB463335 CU680640	-77763	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	10603	-	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	44204	-	TSC_hg19_v1_chr7_-_994317 NM_006869	44402	-	BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC142707|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001130965|SUN1|23353|Sad1 and UNC84 domain containing 1##AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1	0.992681	0.0	denovo_WM_7:3:0.715	denovo_WM_7:4:0.277
chr6	90060277	90060400	reg1001947.p1	9.184	+	BC130352 BC130354 M86868 NM_002043	-35387	-	AK313609 NM_002042	-132843	-	TSC_hg19_v1_chr6_+_89855838 BC035036 NM_001010853 AK302464 BC045583	-204457	+	AB464335 DQ895144 EU176317 AF161502 U93243 TSC_hg19_v1_chr6_-_90062340	1978	-	AJ245898 TSC_hg19_v1_chr6_-_90062433 AF151834	2055	-	TSC_hg19_v1_chr6_-_90062439 AK223464 AK300629	2102	-	BC130352|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##BC130354|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##M86868|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##NM_002043|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##AK313609|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##NM_002042|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##BC035036|PM20D2|135293|peptidase M20 domain containing 2##NM_001010853|PM20D2|135293|peptidase M20 domain containing 2##AK302464|PM20D2|135293|peptidase M20 domain containing 2##BC045583|PM20D2|135293|peptidase M20 domain containing 2##DQ895144|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##EU176317|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF161502|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##U93243|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AJ245898|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF151834|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK223464|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK300629|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U	0.89046	0.0	denovo_WM_7:-25:0.327	denovo_WM_7:-26:0.216	denovo_WM_7:-27:0.348
chr1	23857683	23857825	reg1003249.p1	9.183	+	L22846 NM_004091	-43	-	BT019523 AB463593 BC053676 AK313939 TSC_hg19_v1_chr1_-_23857464	-379	-	TSC_hg19_v1_chr1_-_23810732 NM_001143778 NM_017707	-47017	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	28230	-	NM_002167 X69111	28530	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	160526	+	L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##BT019523|E2F2|1870|E2F transcription factor 2##BC053676|E2F2|1870|E2F transcription factor 2##AK313939|E2F2|1870|E2F transcription factor 2##NM_001143778|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##NM_017707|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11	1.401433	0.0	denovo_WM_7:-2:0.518	denovo_WM_7:-3:0.263	denovo_WM_7:-17:0.298
chr10	6532688	6532860	reg1002608.p2	9.182	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-287898	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-345862	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-345890	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	89487	-	TSC_hg19_v1_chr10_+_6622460 AY007155	89706	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	918476	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	1.48581	0.0	denovo_WM_7:-41:0.245	denovo_WM_7:87:0.816
chr12	118643688	118643838	reg1001027.p3	9.181	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-69785	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-69840	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-69888	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	166865	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	166967	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	170639	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.997067	0.0	denovo_WM_7:-22:0.826
chr10	92759296	92759448	reg1003312.p1	9.180	+	X83703 NM_014391	-78344	-	AB528537 DQ892852 DQ896099 AY903446 BC005191 AK290960 BC018667 TSC_hg19_v1_chr10_-_92680845	-78556	-	TSC_hg19_v1_chr10_+_92631730 NM_001104546 NM_006413 AL833628 AK296196 U77665 AK312900 AK225532 DQ893181 DQ896488	-127650	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	163390	+	TSC_hg19_v1_chr10_+_92980445 NM_032373	221036	+	TSC_hg19_v1_chr10_+_92980539 AL832496	221162	+	X83703|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_014391|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ892852|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ896099|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AY903446|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC005191|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AK290960|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC018667|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_001104546|RPP30|10556|ribonuclease P/MRP 30kDa subunit##NM_006413|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AL833628|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AK296196|RPP30|10556|ribonuclease P/MRP 30kDa subunit##U77665|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AK312900|RPP30|10556|ribonuclease P/MRP 30kDa subunit##AK225532|RPP30|10556|ribonuclease P/MRP 30kDa subunit##DQ893181|RPP30|10556|ribonuclease P/MRP 30kDa subunit##DQ896488|RPP30|10556|ribonuclease P/MRP 30kDa subunit##BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##NM_032373|PCGF5|84333|polycomb group ring finger 5##AL832496|PCGF5|84333|polycomb group ring finger 5	0.0	0.0	
chr13	53239630	53239797	reg1002565.p1	9.179	+	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	-12771	+	TSC_hg19_v1_chr13_+_53216565 BC108266	-23148	+	TSC_hg19_v1_chr13_+_53191659 NM_001011724 NM_001011725 BC007108 AK123159 BC082242	-48076	+	AB006000 CR541910 TSC_hg19_v1_chr13_-_53313891	74151	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	74249	-	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	183062	-	NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC108266|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011724|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011725|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AK123159|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##BC082242|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AB006000|LECT1|11061|leukocyte cell derived chemotaxin 1##CR541910|LECT1|11061|leukocyte cell derived chemotaxin 1##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8	0.992178	0.119877	denovo_WM_7:46:0.548
chr1	211692392	211692537	reg1002702.p1	9.178	+	AY191519 NM_001164688 NM_183059	-26206	-	TSC_hg19_v1_chr1_+_211556168 BC005997	-136296	+	TSC_hg19_v1_chr1_+_211556144 AK130858	-136317	+	AF364518 TSC_hg19_v1_chr1_-_211751805	59298	-	AB451467 TSC_hg19_v1_chr1_-_211752048	59536	-	TSC_hg19_v1_chr1_-_211752056 BC121015 BC121016 NM_021194	59624	-	AY191519|RD3|343035|retinal degeneration 3##NM_001164688|RD3|343035|retinal degeneration 3##NM_183059|RD3|343035|retinal degeneration 3##BC005997|LINC00467|84791|long intergenic non-protein coding RNA 467##AK130858|LINC00467|84791|long intergenic non-protein coding RNA 467##AF364518|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AB451467|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC121015|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC121016|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##NM_021194|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1	0.0	0.0	
chr16	11877544	11877724	reg1002955.p1	9.174	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-40978	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-115336	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-196845	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	13417	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	13481	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	67770	-	AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1	0.0	0.0	
chr5	118659976	118660154	reg1002282.p2	9.174	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-55548	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-55607	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-252900	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	31553	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	31673	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	128131	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	2.634098	0.0	denovo_WM_7:-57:0.652	denovo_WM_7:-72:0.656	denovo_WM_7:-87:0.707
chr6	111270965	111271145	reg1002720.p2	9.174	+	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	-75033	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-134329	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-134541	-	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	8775	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	8903	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	32219	+	AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)	1.916273	0.063398	denovo_WM_7:-22:0.525	denovo_WM_7:-29:0.220	denovo_WM_7:-47:0.982
chr20	22293540	22293684	reg1002750.p1	9.172	+	TSC_hg19_v1_chr20_+_21686519 BC143791 BC143793	-607079	+	TSC_hg19_v1_chr20_+_21686296 NM_006192	-607318	+	NM_002509	-798949	-	BC006545 BC019288 AB464525 DQ892883 DQ896132 TSC_hg19_v1_chr20_-_22564902 AK301611 BC011780	271304	-	TSC_hg19_v1_chr20_-_22565060 NM_021784	271463	-	AB028021 TSC_hg19_v1_chr20_-_22566094 NM_153675	272490	-	BC143791|PAX1|5075|paired box 1##BC143793|PAX1|5075|paired box 1##NM_006192|PAX1|5075|paired box 1##NM_002509|NKX2-2|4821|NK2 homeobox 2##BC006545|FOXA2|3170|forkhead box A2##BC019288|FOXA2|3170|forkhead box A2##DQ892883|FOXA2|3170|forkhead box A2##DQ896132|FOXA2|3170|forkhead box A2##AK301611|FOXA2|3170|forkhead box A2##BC011780|FOXA2|3170|forkhead box A2##NM_021784|FOXA2|3170|forkhead box A2##AB028021|FOXA2|3170|forkhead box A2##NM_153675|FOXA2|3170|forkhead box A2	0.861193	0.18426	denovo_WM_7:21:0.502	denovo_WM_7:22:0.223
chr3	175134534	175134681	reg1002029.p1	9.172	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-557517	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-975887	+	BC032555 NM_014932	-2018364	+	TSC_hg19_v1_chr3_-_176914267 BX648935	1779643	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	1780344	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	1780452	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.0	0.0	
chr17	73098465	73098582	reg1002467.p1	9.171	+	TSC_hg19_v1_chr17_+_73084056 BC009684 NM_004695	-14468	+	TSC_hg19_v1_chr17_+_73043325 D79998	-55190	+	TSC_hg19_v1_chr17_+_73043288 BC033329 NM_015353	-55294	+	TSC_hg19_v1_chr17_+_73106069 AK300997 AK310697 BC011728 NM_024585	7531	+	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	29334	-	DQ891909 DQ895094 DQ896835 EU176653 CU674698 AF177862 BC001420 TSC_hg19_v1_chr17_-_73150608 AF266846 AK223321 AK312613	52029	-	BC009684|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##NM_004695|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##D79998|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC033329|KCTD2|23510|potassium channel tetramerisation domain containing 2##NM_015353|KCTD2|23510|potassium channel tetramerisation domain containing 2##AK300997|ARMC7|79637|armadillo repeat containing 7##BC011728|ARMC7|79637|armadillo repeat containing 7##NM_024585|ARMC7|79637|armadillo repeat containing 7##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic##DQ891909|HN1|51155|hematological and neurological expressed 1##DQ895094|HN1|51155|hematological and neurological expressed 1##DQ896835|HN1|51155|hematological and neurological expressed 1##EU176653|HN1|51155|hematological and neurological expressed 1##AF177862|HN1|51155|hematological and neurological expressed 1##BC001420|HN1|51155|hematological and neurological expressed 1##AF266846|HN1|51155|hematological and neurological expressed 1##AK223321|HN1|51155|hematological and neurological expressed 1##AK312613|HN1|51155|hematological and neurological expressed 1	0.421975	0.0	denovo_WM_7:-13:0.422
chr19	1249817	1249933	reg1002868.p1	9.171	+	TSC_hg19_v1_chr19_+_1248581 NM_177401	-1301	+	TSC_hg19_v1_chr19_+_1241811 BC050458 BC018079 CR542218	-8042	+	TSC_hg19_v1_chr19_+_1241769 BC058927	-8107	+	TSC_hg19_v1_chr19_+_1249886 BC060848 BC094778	9	+	TSC_hg19_v1_chr19_+_1269330 NM_001280 AK095781 AK304185 AK304470 AK311601 AK128423 AF021336 AK094781 D78134 BC000901 BC000403	19430	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	21074	+	NM_177401|MIDN|90007|midnolin##BC050458|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC018079|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##CR542218|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC058927|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC060848|MIDN|90007|midnolin##BC094778|MIDN|90007|midnolin##NM_001280|CIRBP|1153|cold inducible RNA binding protein##AK095781|CIRBP|1153|cold inducible RNA binding protein##AK304185|CIRBP|1153|cold inducible RNA binding protein##AK304470|CIRBP|1153|cold inducible RNA binding protein##AK311601|CIRBP|1153|cold inducible RNA binding protein##AK128423|CIRBP|1153|cold inducible RNA binding protein##AF021336|CIRBP|1153|cold inducible RNA binding protein##AK094781|CIRBP|1153|cold inducible RNA binding protein##D78134|CIRBP|1153|cold inducible RNA binding protein##BC000901|CIRBP|1153|cold inducible RNA binding protein##BC000403|CIRBP|1153|cold inducible RNA binding protein##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein	0.165329	0.0	
chr2	110551696	110551876	reg1002906.p2	9.171	+	AL136868 NM_001037866 NM_001123363 NM_032260	-1452	+	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	-179841	+	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	-180061	-	NM_005054 U64675	179	+	BC094740 NM_001205288 NM_033514	104222	+	U17077 AB590150 DQ892870 DQ896118 TSC_hg19_v1_chr2_-_110873397 BC003179	321619	-	AL136868|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001037866|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_001123363|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_032260|RGPD5|84220|RANBP2-like and GRIP domain containing 5##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##BC094740|LIMS3-LOC440895|100271835|LIMS3-LOC440895 readthrough##NM_001205288|LIMS3L|100288695|LIM and senescent cell antigen-like domains 3-like##NM_033514|LIMS3|96626|LIM and senescent cell antigen-like domains 3##U17077|MALL|7851|mal, T-cell differentiation protein-like##DQ892870|MALL|7851|mal, T-cell differentiation protein-like##DQ896118|MALL|7851|mal, T-cell differentiation protein-like##BC003179|MALL|7851|mal, T-cell differentiation protein-like	0.0	0.0	
chr13	103683884	103684053	reg1002444.p1	9.170	+	TSC_hg19_v1_chr13_+_103498385 BX647399 AK303558 X69978 AK299758 L20046 D16305 CU689168 DQ891818 DQ895006	-185482	+	AK294708 TSC_hg19_v1_chr13_+_103498254	-185714	+	TSC_hg19_v1_chr13_+_103498240 NM_000123 BC031522 AF462447	-185759	+	NM_000452 U10417	35227	-	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	2434336	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	2434623	+	BX647399|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK303558|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##X69978|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK299758|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##L20046|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##D16305|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ891818|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ895006|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK294708|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##NM_000123|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##BC031522|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AF462447|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator	0.917981	0.0	denovo_WM_7:-12:0.327	denovo_WM_7:-15:0.213
chr15	35788855	35789013	reg1003090.p2	9.168	+	NM_014106 TSC_hg19_v1_chr15_-_35280498	-508422	-	TSC_hg19_v1_chr15_-_35280489 BC071603 AK291438	-508480	-	AB384497 AK291615 BC127111 BC127112 TSC_hg19_v1_chr15_-_35261899 AB011132 AK315815 BX647820 EF553519 NM_014691	-527007	-	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	49452	-	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	1082965	+	NM_032499	1143871	+	NM_014106|ZNF770|54989|zinc finger protein 770##BC071603|ZNF770|54989|zinc finger protein 770##AK291438|ZNF770|54989|zinc finger protein 770##AK291615|AQR|9716|aquarius homolog (mouse)##BC127111|AQR|9716|aquarius homolog (mouse)##BC127112|AQR|9716|aquarius homolog (mouse)##AB011132|AQR|9716|aquarius homolog (mouse)##AK315815|AQR|9716|aquarius homolog (mouse)##BX647820|AQR|9716|aquarius homolog (mouse)##EF553519|AQR|9716|aquarius homolog (mouse)##NM_014691|AQR|9716|aquarius homolog (mouse)##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##NM_032499|C15orf41|84529|chromosome 15 open reading frame 41	0.0	0.0	
chr17	76149558	76149668	reg1001682.p1	9.168	+	AY358510 NM_001163075	-7180	+	BC023597 NM_007267 TSC_hg19_v1_chr17_-_76128499	-21113	-	TSC_hg19_v1_chr17_+_76126871 AK310623 NM_152468 AK303499 BC110296 AY099358 AY099359 BC028076 AK090478	-22747	+	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	15047	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	33566	-	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	33810	+	AY358510|C17orf99|100141515|chromosome 17 open reading frame 99##NM_001163075|C17orf99|100141515|chromosome 17 open reading frame 99##BC023597|TMC6|11322|transmembrane channel-like 6##NM_007267|TMC6|11322|transmembrane channel-like 6##AK310623|TMC8|147138|transmembrane channel-like 8##NM_152468|TMC8|147138|transmembrane channel-like 8##AK303499|TMC8|147138|transmembrane channel-like 8##BC110296|TMC8|147138|transmembrane channel-like 8##AY099358|TMC8|147138|transmembrane channel-like 8##AY099359|TMC8|147138|transmembrane channel-like 8##BC028076|TMC8|147138|transmembrane channel-like 8##AK090478|TMC8|147138|transmembrane channel-like 8##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase	0.99765	0.0	denovo_WM_7:-36:0.683
chr8	11324212	11324371	reg1002528.p2	9.165	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-62	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-119287	-	AJ291677 NM_054028 BC131696	-135781	+	S76617 NM_001715 BC018703 BC004473 BC038555	27302	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	237429	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	302977	+	AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)	0.0	0.0	
chr2	7139248	7139374	reg1003075.p1	9.163	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-81724	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-121448	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-132608	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1682892	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1838408	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	2004510	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr21	35327987	35328144	reg1001705.p1	9.161	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-39973	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-137395	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-313210	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	117776	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	117864	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	408281	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.998675	0.0	
chr8	28270018	28270198	reg1002289.p2	9.160	+	AK002050 AK023418 NM_018660 AB057659 AB073627	-26147	-	BC001237 TSC_hg19_v1_chr8_-_28243694	-26466	-	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-95383	+	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	77671	-	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	81657	+	TSC_hg19_v1_chr8_+_28559032 AB011091	288967	+	AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC001237|ZNF395|55893|zinc finger protein 395##NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3	3.843952	0.0	denovo_WM_7:-32:0.344	denovo_WM_7:-33:0.332	denovo_WM_7:-34:0.319	denovo_WM_7:-49:0.952	denovo_WM_7:-65:0.986	denovo_WM_7:-85:0.684
chr21	37485213	37485338	reg1002671.p1	9.155	+	TSC_hg19_v1_chr21_+_37442321 AK294142 J04056 AK308691 AK311219 BC015640 AK314879 BC002511 DQ892353 DQ895559 BT019843 CR541708	-42920	+	AB124848 TSC_hg19_v1_chr21_+_37442272 NM_001757	-43022	+	BC036556 TSC_hg19_v1_chr21_-_37432809 AK300009 NM_017438	-52459	-	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	22074	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	43356	-	AJ237839 NM_005128	51563	+	AK294142|CBR1|873|carbonyl reductase 1##J04056|CBR1|873|carbonyl reductase 1##AK308691|CBR1|873|carbonyl reductase 1##AK311219|CBR1|873|carbonyl reductase 1##BC015640|CBR1|873|carbonyl reductase 1##AK314879|CBR1|873|carbonyl reductase 1##BC002511|CBR1|873|carbonyl reductase 1##DQ892353|CBR1|873|carbonyl reductase 1##DQ895559|CBR1|873|carbonyl reductase 1##BT019843|CBR1|873|carbonyl reductase 1##CR541708|CBR1|873|carbonyl reductase 1##AB124848|CBR1|873|carbonyl reductase 1##NM_001757|CBR1|873|carbonyl reductase 1##BC036556|SETD4|54093|SET domain containing 4##AK300009|SETD4|54093|SET domain containing 4##NM_017438|SETD4|54093|SET domain containing 4##AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2	0.0	0.856914	CTCF.p2:-10:0.857
chr16	27265740	27265913	reg1000932.p1	9.148	+	AK297166 NM_001145348	-50531	+	NM_024773 AK023860 BC027911 AK310885 TSC_hg19_v1_chr16_+_27214846 AK225066	-50999	+	NM_001145545 BC031257 AK311574	-187579	+	TSC_hg19_v1_chr16_-_27280055 AK315674	14226	-	TSC_hg19_v1_chr16_-_27280058 AF161451 AF161455 AK056795 NM_145080	14259	-	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	59428	+	AK297166|JMJD5|79831|jumonji domain containing 5##NM_001145348|JMJD5|79831|jumonji domain containing 5##NM_024773|JMJD5|79831|jumonji domain containing 5##AK023860|JMJD5|79831|jumonji domain containing 5##BC027911|JMJD5|79831|jumonji domain containing 5##AK310885|JMJD5|79831|jumonji domain containing 5##AK225066|JMJD5|79831|jumonji domain containing 5##NM_001145545|C16orf82|162083|chromosome 16 open reading frame 82##BC031257|C16orf82|162083|chromosome 16 open reading frame 82##AK311574|C16orf82|162083|chromosome 16 open reading frame 82##AK315674|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161451|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161455|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK056795|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##NM_145080|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor	0.720684	0.0	denovo_WM_7:29:0.313	denovo_WM_7:90:0.201
chr5	115987843	115988023	reg1002239.p1	9.148	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-77419	-	TSC_hg19_v1_chr5_+_115898220 D28352	-89709	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-567212	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2336305	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2418878	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2419232	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.142833	0.0	
chr15	23074069	23074194	reg1002882.p2	9.147	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-39715	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-39764	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-39797	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	12243	-	BC025678 NM_001142275	12711	-	TSC_hg19_v1_chr15_-_23115247 BC044583	41117	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	1.054734	0.0	
chr17	16289898	16290078	reg1001761.p1	9.147	+	AK129498 BC015127 BC026301 BC031027 BC038999 TSC_hg19_v1_chr17_+_16284408 BC046123 BC009301	-5574	+	TSC_hg19_v1_chr17_+_16284404 AK300882	-5586	+	TSC_hg19_v1_chr17_+_16284371 BC000379 NM_018955	-5624	+	TSC_hg19_v1_chr17_+_16318881 AK289705 NM_016113 BC018926 BC051305	28885	+	TSC_hg19_v1_chr17_+_16318917 AK001896	28930	+	TSC_hg19_v1_chr17_+_16319096 AF103906	29117	+	AK129498|UBB|7314|ubiquitin B##BC015127|UBB|7314|ubiquitin B##BC026301|UBB|7314|ubiquitin B##BC031027|UBB|7314|ubiquitin B##BC038999|UBB|7314|ubiquitin B##BC046123|UBB|7314|ubiquitin B##BC009301|UBB|7314|ubiquitin B##AK300882|UBB|7314|ubiquitin B##BC000379|UBB|7314|ubiquitin B##NM_018955|UBB|7314|ubiquitin B##AK289705|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##NM_016113|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##BC018926|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##BC051305|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##AK001896|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##AF103906|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2	0.914526	0.0	denovo_WM_7:59:0.259
chr1	172688862	172688984	reg1002782.p1	9.144	+	D38122 AK314874 NM_000639 X89102 BC017502 U08137 AF288573 U11821 AB528416 DQ893466 DQ896147 CU675998 AY225406 AY858799	-60674	+	TSC_hg19_v1_chr1_+_172502291 NM_016227 AK302509 AL035291 BC137125 BC144487	-186542	+	TSC_hg19_v1_chr1_+_172502152 AK302949 AJ250075 NM_014283	-186781	+	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	331133	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	485730	-	CR542033 D90224 X79929 NM_003326	487469	-	D38122|FASLG|356|Fas ligand (TNF superfamily, member 6)##AK314874|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_000639|FASLG|356|Fas ligand (TNF superfamily, member 6)##X89102|FASLG|356|Fas ligand (TNF superfamily, member 6)##BC017502|FASLG|356|Fas ligand (TNF superfamily, member 6)##U08137|FASLG|356|Fas ligand (TNF superfamily, member 6)##AF288573|FASLG|356|Fas ligand (TNF superfamily, member 6)##U11821|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ893466|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ896147|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY225406|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY858799|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_016227|C1orf9|51430|chromosome 1 open reading frame 9##AK302509|C1orf9|51430|chromosome 1 open reading frame 9##AL035291|C1orf9|51430|chromosome 1 open reading frame 9##BC137125|C1orf9|51430|chromosome 1 open reading frame 9##BC144487|C1orf9|51430|chromosome 1 open reading frame 9##AK302949|C1orf9|51430|chromosome 1 open reading frame 9##AJ250075|C1orf9|51430|chromosome 1 open reading frame 9##NM_014283|C1orf9|51430|chromosome 1 open reading frame 9##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4	1.684627	0.120663	denovo_WM_7:-9:0.827	denovo_WM_7:-27:0.606
chr1	19717512	19717692	reg1002439.p1	9.141	+	NM_001040125 NM_001040126 NM_017765 TSC_hg19_v1_chr1_+_19638819 AK000327 AK130175 AK125580 AK130171 AK172745 BC015324	-78807	+	BC007352 BC012171 TSC_hg19_v1_chr1_-_19638614 BC010852 NM_003689	-78968	-	TSC_hg19_v1_chr1_-_19638598 Y16675 AF026947 AK225267	-78997	-	TSC_hg19_v1_chr1_-_19811972 AK313113 BC107752	94365	-	TSC_hg19_v1_chr1_-_19812006 AK125085	94404	-	NM_001206540 NM_004930 TSC_hg19_v1_chr1_-_19812073	94487	-	NM_001040125|PQLC2|54896|PQ loop repeat containing 2##NM_001040126|PQLC2|54896|PQ loop repeat containing 2##NM_017765|PQLC2|54896|PQ loop repeat containing 2##AK000327|PQLC2|54896|PQ loop repeat containing 2##AK130175|PQLC2|54896|PQ loop repeat containing 2##AK125580|PQLC2|54896|PQ loop repeat containing 2##AK130171|PQLC2|54896|PQ loop repeat containing 2##AK172745|PQLC2|54896|PQ loop repeat containing 2##BC015324|PQLC2|54896|PQ loop repeat containing 2##BC007352|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##BC012171|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##BC010852|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##NM_003689|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##Y16675|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##AF026947|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##AK225267|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##AK313113|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##BC107752|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##AK125085|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##NM_001206540|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##NM_004930|CAPZB|832|capping protein (actin filament) muscle Z-line, beta	0.997258	0.0	denovo_WM_7:-29:0.972
chr17	46916273	46916404	reg1002915.p1	9.141	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-7948	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-21914	-	CU689652 BC033563 NM_173623 AK310321	-44693	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	53847	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	69407	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	69496	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	0.978929	0.0	denovo_WM_7:32:0.408	denovo_WM_7:33:0.411
chr17	55434152	55434317	reg1002515.p2	9.141	+	AK093888 AX748353 NM_170721	-99861	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-100261	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-271091	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	493170	-	AK000746 NM_017949	546515	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	598442	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	0.741419	0.0	denovo_WM_7:0:0.381
chr13	40176490	40176603	reg1002621.p1	9.140	+	TSC_hg19_v1_chr13_+_39612534 AL833329 NM_001012754 NM_001017370 BX648122 BC052492 BC140877 BC140878 CR749318 AK300260 AK299198 BX647872	-564011	+	TSC_hg19_v1_chr13_-_39612251 NM_025138 NM_170719	-564293	-	TSC_hg19_v1_chr13_-_39612201 AK074360 AB107354	-564345	-	AF098807 BC017824 TSC_hg19_v1_chr13_-_40177268	698	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	781	-	NM_005780 TSC_hg19_v1_chr13_-_40177356	816	-	AL833329|NHLRC3|387921|NHL repeat containing 3##NM_001012754|NHLRC3|387921|NHL repeat containing 3##NM_001017370|NHLRC3|387921|NHL repeat containing 3##BX648122|NHLRC3|387921|NHL repeat containing 3##BC052492|NHLRC3|387921|NHL repeat containing 3##BC140877|NHLRC3|387921|NHL repeat containing 3##BC140878|NHLRC3|387921|NHL repeat containing 3##CR749318|NHLRC3|387921|NHL repeat containing 3##AK300260|NHLRC3|387921|NHL repeat containing 3##AK299198|NHLRC3|387921|NHL repeat containing 3##BX647872|NHLRC3|387921|NHL repeat containing 3##NM_025138|PROSER1|80209|proline and serine rich 1##NM_170719|PROSER1|80209|proline and serine rich 1##AK074360|PROSER1|80209|proline and serine rich 1##AB107354|PROSER1|80209|proline and serine rich 1##AF098807|LHFP|10186|lipoma HMGIC fusion partner##BC017824|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##NM_005780|LHFP|10186|lipoma HMGIC fusion partner	0.0	0.912967	CTCF.p2:90:0.913
chr3	152760993	152761105	reg1002773.p1	9.140	+	NM_002563 Z49205	-208314	+	AY358260 NM_001123228	-702271	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-743856	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	118977	+	TSC_hg19_v1_chr3_+_152880058 BC012362	118999	+	AF086445 NM_001101337	441234	+	NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family##AF086445|C3orf79|152118|chromosome 3 open reading frame 79##NM_001101337|C3orf79|152118|chromosome 3 open reading frame 79	0.155367	0.863565	CTCF.p2:-37:0.864
chr3	150104343	150104516	reg1002537.p5	9.139	+	BC012363 TSC_hg19_v1_chr3_+_149689094	-415349	+	TSC_hg19_v1_chr3_-_149688960 BC043646	-415500	-	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	-415733	-	TSC_hg19_v1_chr3_+_150126084 AK297383 AB014569	21643	+	TSC_hg19_v1_chr3_+_150126774 BC044643 NM_014779	22334	+	X75694 CR533472 TSC_hg19_v1_chr3_-_150264030	159541	-	BC012363|LOC646903|646903|uncharacterized LOC646903##BC043646|PFN2|5217|profilin 2##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##AK297383|TSC22D2|9819|TSC22 domain family, member 2##AB014569|TSC22D2|9819|TSC22 domain family, member 2##BC044643|TSC22D2|9819|TSC22 domain family, member 2##NM_014779|TSC22D2|9819|TSC22 domain family, member 2##X75694|SERP1|27230|stress-associated endoplasmic reticulum protein 1##CR533472|SERP1|27230|stress-associated endoplasmic reticulum protein 1	0.995386	0.0	denovo_WM_7:-21:0.234	denovo_WM_7:-22:0.234	denovo_WM_7:-23:0.234	denovo_WM_7:-24:0.234
chr5	124341661	124341840	reg1002817.p2	9.135	+	BC131507 AB033107 BC151226 NM_020747	-260962	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1493868	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1582606	-	NM_001146319 AK316288 AK300154	1354064	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1417093	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1417437	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.0	0.051971	
chr21	34304754	34304865	reg1002366.p1	9.131	+	BC069689 BC069709 BC069766 BC069779 AF231922 AK290983 DQ656042 NM_001162495 NM_001162496 NM_019596	-118812	-	AK096601 BC034794 TSC_hg19_v1_chr21_+_34144471 BC117397 BC117399	-160346	+	AY033903 AY033904 AY033905 AY033906 TSC_hg19_v1_chr21_-_34144044 AJ279080 AJ279081 AK309404 BC030539 BC084542 BC062992 NM_013329 NM_016631	-160735	-	TSC_hg19_v1_chr21_+_34398242 NM_005806 AK091462 BC047511 BC036245 BC034681 BC036275 AF221520	93442	+	TSC_hg19_v1_chr21_+_34442446 BC033290 NM_138983 AL834450 AB209791	137643	+	TSC_hg19_v1_chr21_+_34442554 AB463154 DQ896828 BC026989	137752	+	BC069689|C21orf62|56245|chromosome 21 open reading frame 62##BC069709|C21orf62|56245|chromosome 21 open reading frame 62##BC069766|C21orf62|56245|chromosome 21 open reading frame 62##BC069779|C21orf62|56245|chromosome 21 open reading frame 62##AF231922|C21orf62|56245|chromosome 21 open reading frame 62##AK290983|C21orf62|56245|chromosome 21 open reading frame 62##DQ656042|C21orf62|56245|chromosome 21 open reading frame 62##NM_001162495|C21orf62|56245|chromosome 21 open reading frame 62##NM_001162496|C21orf62|56245|chromosome 21 open reading frame 62##NM_019596|C21orf62|56245|chromosome 21 open reading frame 62##AK096601|C21orf49|54067|chromosome 21 open reading frame 49##BC034794|C21orf49|54067|chromosome 21 open reading frame 49##BC117397|C21orf49|54067|chromosome 21 open reading frame 49##BC117399|C21orf49|54067|chromosome 21 open reading frame 49##AY033903|GCFC1|94104|GC-rich sequence DNA-binding factor 1##AY033904|GCFC1|94104|GC-rich sequence DNA-binding factor 1##AY033905|GCFC1|94104|GC-rich sequence DNA-binding factor 1##AY033906|GCFC1|94104|GC-rich sequence DNA-binding factor 1##AJ279080|GCFC1|94104|GC-rich sequence DNA-binding factor 1##AJ279081|GCFC1|94104|GC-rich sequence DNA-binding factor 1##AK309404|GCFC1|94104|GC-rich sequence DNA-binding factor 1##BC030539|GCFC1|94104|GC-rich sequence DNA-binding factor 1##BC084542|GCFC1|94104|GC-rich sequence DNA-binding factor 1##BC062992|GCFC1|94104|GC-rich sequence DNA-binding factor 1##NM_013329|GCFC1|94104|GC-rich sequence DNA-binding factor 1##NM_016631|GCFC1|94104|GC-rich sequence DNA-binding factor 1##NM_005806|OLIG2|10215|oligodendrocyte lineage transcription factor 2##AK091462|OLIG2|10215|oligodendrocyte lineage transcription factor 2##BC047511|OLIG2|10215|oligodendrocyte lineage transcription factor 2##BC036245|OLIG2|10215|oligodendrocyte lineage transcription factor 2##BC034681|OLIG2|10215|oligodendrocyte lineage transcription factor 2##BC036275|OLIG2|10215|oligodendrocyte lineage transcription factor 2##AF221520|OLIG2|10215|oligodendrocyte lineage transcription factor 2##BC033290|OLIG1|116448|oligodendrocyte transcription factor 1##NM_138983|OLIG1|116448|oligodendrocyte transcription factor 1##AL834450|OLIG1|116448|oligodendrocyte transcription factor 1##AB209791|OLIG1|116448|oligodendrocyte transcription factor 1##DQ896828|OLIG1|116448|oligodendrocyte transcription factor 1##BC026989|OLIG1|116448|oligodendrocyte transcription factor 1	0.988793	0.0	denovo_WM_7:-19:0.944
chr6	6637100	6637235	reg1002309.p1	9.131	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-48217	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-316257	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	-316282	-	BC039678 TSC_hg19_v1_chr6_+_6725205	87994	+	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	470659	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	470868	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1	1.990793	0.152261	denovo_WM_7:-33:0.435	denovo_WM_7:-34:0.359
chr2	102423413	102423569	reg1002972.p2	9.127	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-109139	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-332298	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-419502	-	TSC_hg19_v1_chr2_+_102508334 BC045694	84851	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	85041	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	184872	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.977202	0.0	denovo_WM_7:19:0.446
chr9	132719218	132719367	reg1002813.p2	9.127	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-121527	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-121570	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-121608	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	86062	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	86196	-	BC039728 NM_001136557 NM_001136558 NM_020960	96692	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.997294	0.0	denovo_WM_7:34:0.952
chr19	2608262	2608397	reg1000278.p2	9.124	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-132091	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-151369	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-151393	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	94366	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	94413	-	AK124445 TSC_hg19_v1_chr19_-_2717420	109020	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.992821	0.0	denovo_WM_7:-8:0.856
chr2	79226720	79226831	reg1002847.p1	9.124	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	-1477357	-	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-3288724	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-3289056	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	26063	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	88358	-	AK307292 NM_002909 TSC_hg19_v1_chr2_+_79347583	120761	+	BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta##AK307292|REG1A|5967|regenerating islet-derived 1 alpha##NM_002909|REG1A|5967|regenerating islet-derived 1 alpha	1.851504	0.475587	denovo_WM_7:19:0.868	CTCF.p2:-30:0.476	denovo_WM_7:-94:0.447	denovo_WM_7:-102:0.204
chr8	59307905	59308023	reg1002761.p1	9.123	+	TSC_hg19_v1_chr8_+_58907119 AK092221 NM_147189	-400807	+	TSC_hg19_v1_chr8_-_57906427 AK000428 NM_017813	-1401538	-	BC067814 TSC_hg19_v1_chr8_-_57906402	-1401562	-	BC113645 NM_001077619 TSC_hg19_v1_chr8_+_59323919 AK126300 HQ258392 AL831990 AL833075 BX647876	15921	+	X56088 M93133 BC101777 BC112184 NM_000780	104743	-	NM_001007067 NM_001007068 NM_001007069 NM_001007070 NM_005625 TSC_hg19_v1_chr8_+_59465774 AF000652	157788	+	AK092221|FAM110B|90362|family with sequence similarity 110, member B##NM_147189|FAM110B|90362|family with sequence similarity 110, member B##AK000428|IMPAD1|54928|inositol monophosphatase domain containing 1##NM_017813|IMPAD1|54928|inositol monophosphatase domain containing 1##BC067814|IMPAD1|54928|inositol monophosphatase domain containing 1##BC113645|UBXN2B|137886|UBX domain protein 2B##NM_001077619|UBXN2B|137886|UBX domain protein 2B##AK126300|UBXN2B|137886|UBX domain protein 2B##HQ258392|UBXN2B|137886|UBX domain protein 2B##AL831990|UBXN2B|137886|UBX domain protein 2B##AL833075|UBXN2B|137886|UBX domain protein 2B##BX647876|UBXN2B|137886|UBX domain protein 2B##X56088|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##M93133|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC101777|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC112184|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_000780|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_001007067|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007068|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007069|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007070|SDCBP|6386|syndecan binding protein (syntenin)##NM_005625|SDCBP|6386|syndecan binding protein (syntenin)##AF000652|SDCBP|6386|syndecan binding protein (syntenin)	0.974636	0.868009	CTCF.p2:-13:0.868	denovo_WM_7:31:0.468
chr4	134109742	134109868	reg1003515.p1	9.121	+	AK024636 TSC_hg19_v1_chr4_+_134073255 AL157470	-36522	+	TSC_hg19_v1_chr4_+_134070448 AB037821 AY013874 NM_020815 NM_032961	-39349	+	NM_001099783	-4092524	+	NM_001114734 TSC_hg19_v1_chr4_-_135122935	1013113	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	4343787	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	4343837	-	AK024636|PCDH10|57575|protocadherin 10##AL157470|PCDH10|57575|protocadherin 10##AB037821|PCDH10|57575|protocadherin 10##AY013874|PCDH10|57575|protocadherin 10##NM_020815|PCDH10|57575|protocadherin 10##NM_032961|PCDH10|57575|protocadherin 10##NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18	0.998596	0.0	
chr10	129925276	129925456	reg1002803.p2	9.120	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	-838	-	BX648180 NM_130435 BC071573 TSC_hg19_v1_chr10_+_129845875 AK290414 AJ430580 AJ315969	-79512	+	TSC_hg19_v1_chr10_+_129705366 AF406557 BC050062 X54134	-219911	+	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	1340105	+	TSC_hg19_v1_chr10_+_131265507 BC000824	1340148	+	AL832828 AB527459 HQ258299 BC126130 BC130479 NM_001005463	1836687	-	NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##BX648180|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_130435|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC071573|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AK290414|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ430580|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ315969|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AF406557|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC050062|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##X54134|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AL832828|EBF3|253738|early B-cell factor 3##HQ258299|EBF3|253738|early B-cell factor 3##BC126130|EBF3|253738|early B-cell factor 3##BC130479|EBF3|253738|early B-cell factor 3##NM_001005463|EBF3|253738|early B-cell factor 3	1.692492	0.0	denovo_WM_7:-18:0.530	denovo_WM_7:-33:0.519
chr12	111849093	111849231	reg1001889.p2	9.117	+	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	-5413	+	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	-42252	-	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	-42316	-	AK126309 TSC_hg19_v1_chr12_-_111893987	44761	-	TSC_hg19_v1_chr12_-_112036257 AK095017	187113	-	TSC_hg19_v1_chr12_-_112036908 AK307803	187751	-	AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3##BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##AK095017|ATXN2|6311|ataxin 2##AK307803|ATXN2|6311|ataxin 2	0.996673	0.0	denovo_WM_7:8:0.841
chr4	156731044	156731167	reg1002864.p1	9.115	+	TSC_hg19_v1_chr4_+_156680603 AK299916	-50499	+	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	-50901	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	-142288	+	AB528059 AJ252011 NM_017419	56295	-	NM_005651 U32989 TSC_hg19_v1_chr4_+_156824847 AK289418 AK307741 BC005355 EU831460 EU831547 CU675137	93772	+	TSC_hg19_v1_chr4_-_156875035 CU690602 BC049206 AK312354 X77383 NM_001334 AK308323	143943	-	AK299916|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AJ252011|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal##NM_017419|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal##NM_005651|TDO2|6999|tryptophan 2,3-dioxygenase##U32989|TDO2|6999|tryptophan 2,3-dioxygenase##AK289418|TDO2|6999|tryptophan 2,3-dioxygenase##AK307741|TDO2|6999|tryptophan 2,3-dioxygenase##BC005355|TDO2|6999|tryptophan 2,3-dioxygenase##EU831460|TDO2|6999|tryptophan 2,3-dioxygenase##EU831547|TDO2|6999|tryptophan 2,3-dioxygenase##BC049206|CTSO|1519|cathepsin O##AK312354|CTSO|1519|cathepsin O##X77383|CTSO|1519|cathepsin O##NM_001334|CTSO|1519|cathepsin O##AK308323|CTSO|1519|cathepsin O	0.977745	0.918928	CTCF.p2:13:0.919	denovo_WM_7:-28:0.810
chrX	56756863	56757043	reg1002995.p2	9.114	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-1262	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-166902	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-498043	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	265018	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	390975	-	BC071694 NM_019003	407104	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	1.99396	0.0	denovo_WM_7:1:0.382	denovo_WM_7:2:0.291	denovo_WM_7:18:0.273	denovo_WM_7:19:0.364
chr11	91033304	91033434	reg1002066.p1	9.113	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-1048959	+	AK290231 NM_001144073 NM_012124	-1076838	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-1077167	-	NM_001008781	1051892	+	BC069163 NM_005959 U25341 AY521019	1669470	+	TSC_hg19_v1_chr11_-_92930978 CU690400	1897618	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.020681	0.0	
chr2	24150366	24150502	reg1002843.p1	9.113	+	TSC_hg19_v1_chr2_+_24150144 BC037901	-277	+	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	-488	-	NM_052920	-542137	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	12937	+	NM_001080473	82518	+	AK025598 TSC_hg19_v1_chr2_-_24270262 BC035698 NM_001142319 NM_025203	119824	-	BC037901|UBXN2A|165324|UBX domain protein 2A##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A##NM_001080473|MFSD2B|388931|major facilitator superfamily domain containing 2B##AK025598|C2orf44|80304|chromosome 2 open reading frame 44##BC035698|C2orf44|80304|chromosome 2 open reading frame 44##NM_001142319|C2orf44|80304|chromosome 2 open reading frame 44##NM_025203|C2orf44|80304|chromosome 2 open reading frame 44	0.0	0.0	
chr6	154567982	154568152	reg1000452.p1	9.111	+	EU360599 EU362990 NM_001145287	-160426	+	L29301 NM_000914 NM_001008503 NM_001008504 NM_001008505 NM_001145282 NM_001145283 NM_001145284 NM_001145285 NM_001145286 L25119 U12569 AB590577 AK309655 AK313901 AY225404 AY364230 AY036622 AY036623 AY309001 AY309005 AY309006 AY309007 AY309008 AY309009 BC074927 AY521028	-207507	+	DQ680044 NM_001145279 NM_001145280 EU340241 EU340242 EU340243 NM_001145281	-236435	+	BX647254 NM_001130699	83147	-	AK289917 AJ310566 NM_001130700 NM_015553 TSC_hg19_v1_chr6_-_154677938	109848	-	TSC_hg19_v1_chr6_-_154831690 BC060761	263604	-	EU360599|OPRM1|4988|opioid receptor, mu 1##EU362990|OPRM1|4988|opioid receptor, mu 1##NM_001145287|OPRM1|4988|opioid receptor, mu 1##L29301|OPRM1|4988|opioid receptor, mu 1##NM_000914|OPRM1|4988|opioid receptor, mu 1##NM_001008503|OPRM1|4988|opioid receptor, mu 1##NM_001008504|OPRM1|4988|opioid receptor, mu 1##NM_001008505|OPRM1|4988|opioid receptor, mu 1##NM_001145282|OPRM1|4988|opioid receptor, mu 1##NM_001145283|OPRM1|4988|opioid receptor, mu 1##NM_001145284|OPRM1|4988|opioid receptor, mu 1##NM_001145285|OPRM1|4988|opioid receptor, mu 1##NM_001145286|OPRM1|4988|opioid receptor, mu 1##L25119|OPRM1|4988|opioid receptor, mu 1##U12569|OPRM1|4988|opioid receptor, mu 1##AK313901|OPRM1|4988|opioid receptor, mu 1##AY225404|OPRM1|4988|opioid receptor, mu 1##AY364230|OPRM1|4988|opioid receptor, mu 1##AY036622|OPRM1|4988|opioid receptor, mu 1##AY036623|OPRM1|4988|opioid receptor, mu 1##AY309001|OPRM1|4988|opioid receptor, mu 1##AY309005|OPRM1|4988|opioid receptor, mu 1##AY309006|OPRM1|4988|opioid receptor, mu 1##AY309007|OPRM1|4988|opioid receptor, mu 1##AY309008|OPRM1|4988|opioid receptor, mu 1##AY309009|OPRM1|4988|opioid receptor, mu 1##BC074927|OPRM1|4988|opioid receptor, mu 1##AY521028|OPRM1|4988|opioid receptor, mu 1##DQ680044|OPRM1|4988|opioid receptor, mu 1##NM_001145279|OPRM1|4988|opioid receptor, mu 1##NM_001145280|OPRM1|4988|opioid receptor, mu 1##EU340241|OPRM1|4988|opioid receptor, mu 1##EU340242|OPRM1|4988|opioid receptor, mu 1##EU340243|OPRM1|4988|opioid receptor, mu 1##NM_001145281|OPRM1|4988|opioid receptor, mu 1##BX647254|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_001130699|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##AK289917|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##AJ310566|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_001130700|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_015553|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##BC060761|CNKSR3|154043|CNKSR family member 3	0.99903	0.0	denovo_WM_7:10:0.314	denovo_WM_7:11:0.314	denovo_WM_7:12:0.314
chr1	53712099	53712267	reg1002534.p1	9.107	+	DQ891289 DQ894473 AB528424 TSC_hg19_v1_chr1_-_53704191 AF035940 BC018211 AK297895 AF067173 AK312113 NM_002370	-7982	-	TSC_hg19_v1_chr1_-_53686277 AK000587 BC010908 NM_017887	-25909	-	TSC_hg19_v1_chr1_+_53662495 BC002445 BC005172 AK312687 M58581	-49687	+	Z75190 D50678 BC051836 TSC_hg19_v1_chr1_-_53793738	81479	-	TSC_hg19_v1_chr1_-_53793743 NM_001018054 NM_004631 NM_017522 NM_033300	81598	-	AK057273 NM_033067 AJ291671	212924	+	DQ891289|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##DQ894473|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AF035940|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##BC018211|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AK297895|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AF067173|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AK312113|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##NM_002370|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AK000587|C1orf123|54987|chromosome 1 open reading frame 123##BC010908|C1orf123|54987|chromosome 1 open reading frame 123##NM_017887|C1orf123|54987|chromosome 1 open reading frame 123##BC002445|CPT2|1376|carnitine palmitoyltransferase 2##BC005172|CPT2|1376|carnitine palmitoyltransferase 2##AK312687|CPT2|1376|carnitine palmitoyltransferase 2##M58581|CPT2|1376|carnitine palmitoyltransferase 2##Z75190|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##D50678|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##BC051836|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_001018054|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_004631|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_017522|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_033300|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##AK057273|DMRTB1|63948|DMRT-like family B with proline-rich C-terminal, 1##NM_033067|DMRTB1|63948|DMRT-like family B with proline-rich C-terminal, 1##AJ291671|DMRTB1|63948|DMRT-like family B with proline-rich C-terminal, 1	0.987395	0.0	denovo_WM_7:48:0.456	denovo_WM_7:49:0.456
chr1	89149519	89149699	reg1003004.p1	9.106	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-1352194	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-1352284	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-1354928	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	486	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	207602	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	207664	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	1.772848	0.0	denovo_WM_7:-19:0.429	denovo_WM_7:-31:0.213	denovo_WM_7:-34:0.461
chr7	70110888	70111016	reg1002787.p2	9.103	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1046364	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1046623	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1047116	+	TSC_hg19_v1_chr7_+_70231164 AK296981	120253	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	486836	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1690826	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.0	0.0	
chrX	52949822	52950002	reg1000001.p1	9.102	+	AL834135 NM_001099684	-21504	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	-23521	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	-23568	+	AL834135 NM_001099684	35716	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	37750	-	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	74734	-	AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A	0.998497	0.0	denovo_WM_7:-59:0.457	denovo_WM_7:-60:0.457
chr5	159827114	159827294	reg1003014.p2	9.101	+	BC032603 TSC_hg19_v1_chr5_-_159827053 NM_022090	-121	-	TSC_hg19_v1_chr5_-_159797619 BC054506 BC011699 AF329836 AB590457 AY358839 NM_031908	-29572	-	AK294000 TSC_hg19_v1_chr5_-_159739572 BC035871 NM_024565 AK302823	-87660	-	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	18901	-	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	21650	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	21699	+	BC032603|C5orf54|63920|chromosome 5 open reading frame 54##NM_022090|C5orf54|63920|chromosome 5 open reading frame 54##BC054506|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC011699|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AF329836|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AY358839|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##NM_031908|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AK294000|CCNJL|79616|cyclin J-like##BC035871|CCNJL|79616|cyclin J-like##NM_024565|CCNJL|79616|cyclin J-like##AK302823|CCNJL|79616|cyclin J-like##AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1	0.0	0.0	
chr17	45365209	45365344	reg1002965.p2	9.099	+	TSC_hg19_v1_chr17_+_45331260 AK300424	-34018	+	AY826979 TSC_hg19_v1_chr17_+_45331224 AB587392 U95204	-34052	+	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	-34092	+	BC044604 TSC_hg19_v1_chr17_+_45401141	35865	+	TSC_hg19_v1_chr17_+_45401357 NM_001195192 NM_152347 BC036407 BC037876	36056	+	TSC_hg19_v1_chr17_-_45569837 BC090855 BC067758	204568	-	AY826979|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##U95204|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC044604|C17orf57|124989|chromosome 17 open reading frame 57##NM_001195192|C17orf57|124989|chromosome 17 open reading frame 57##NM_152347|C17orf57|124989|chromosome 17 open reading frame 57##BC036407|C17orf57|124989|chromosome 17 open reading frame 57##BC037876|C17orf57|124989|chromosome 17 open reading frame 57##BC090855|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2##BC067758|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2	1.997212	0.0	denovo_WM_7:8:0.444	denovo_WM_7:9:0.296	denovo_WM_7:24:0.324	denovo_WM_7:25:0.471
chr4	175286294	175286404	reg1001978.p1	9.099	+	BC014903 NM_012180 AK123740	-80942	-	TSC_hg19_v1_chr4_+_175205073 NM_001145314 BC038667 AB051499 AK094961 AK292484	-81236	+	NM_001040157 TSC_hg19_v1_chr4_+_175204877	-81489	+	U63296 X82460 BC007691 BC018986 J05594 L76465 AK058013 AK300940 AK314624 AK300125 TSC_hg19_v1_chr4_-_175443639	157271	-	AK300524 NM_000860 NM_001145816	157442	-	U93917 BC036086 NM_001042543 NM_006529	464071	-	BC014903|FBXO8|26269|F-box protein 8##NM_012180|FBXO8|26269|F-box protein 8##AK123740|FBXO8|26269|F-box protein 8##NM_001145314|CEP44|80817|centrosomal protein 44kDa##BC038667|CEP44|80817|centrosomal protein 44kDa##AB051499|CEP44|80817|centrosomal protein 44kDa##AK094961|CEP44|80817|centrosomal protein 44kDa##AK292484|CEP44|80817|centrosomal protein 44kDa##NM_001040157|CEP44|80817|centrosomal protein 44kDa##U63296|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##X82460|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC007691|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC018986|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##J05594|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##L76465|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK058013|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300940|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK314624|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300125|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3	1.63771	0.859888	CTCF.p2:0:0.860	denovo_WM_7:48:0.449	denovo_WM_7:63:0.565
chr7	150481256	150481410	reg1002766.p1	9.097	+	NM_001162367	-34510	+	TSC_hg19_v1_chr7_+_150434679 BC033688 BC011732	-46643	+	NM_018384 TSC_hg19_v1_chr7_+_150434485 AK002158 AK297881	-46858	+	TSC_hg19_v1_chr7_-_150497453 AK315575 AK000841 BC091471 AK129525 NM_001101311 NM_001101312 NM_001101314	16176	-	BC008303 TSC_hg19_v1_chr7_+_150497852 NM_018487 AF258340	16539	+	BC004358 BC014586 NM_014020 AK097304	17072	-	NM_001162367|LOC100128542|100128542|uncharacterized LOC100128542##BC033688|GIMAP5|55340|GTPase, IMAP family member 5##BC011732|GIMAP5|55340|GTPase, IMAP family member 5##NM_018384|GIMAP5|55340|GTPase, IMAP family member 5##AK002158|GIMAP5|55340|GTPase, IMAP family member 5##AK297881|GIMAP5|55340|GTPase, IMAP family member 5##AK315575|TMEM176B|28959|transmembrane protein 176B##AK000841|TMEM176B|28959|transmembrane protein 176B##BC091471|TMEM176B|28959|transmembrane protein 176B##AK129525|TMEM176B|28959|transmembrane protein 176B##NM_001101311|TMEM176B|28959|transmembrane protein 176B##NM_001101312|TMEM176B|28959|transmembrane protein 176B##NM_001101314|TMEM176B|28959|transmembrane protein 176B##BC008303|TMEM176A|55365|transmembrane protein 176A##NM_018487|TMEM176A|55365|transmembrane protein 176A##AF258340|TMEM176A|55365|transmembrane protein 176A##BC004358|TMEM176B|28959|transmembrane protein 176B##BC014586|TMEM176B|28959|transmembrane protein 176B##NM_014020|TMEM176B|28959|transmembrane protein 176B##AK097304|TMEM176B|28959|transmembrane protein 176B	0.998367	0.0	denovo_WM_7:6:0.229	denovo_WM_7:7:0.229	denovo_WM_7:8:0.229	denovo_WM_7:9:0.229
chr11	70048072	70048219	reg1003492.p1	9.096	+	AY728143 NM_018043 TSC_hg19_v1_chr11_+_69924473	-123705	+	NM_005247	-413954	-	M17446 NM_002007	-457975	-	NM_003824 TSC_hg19_v1_chr11_+_70049420 AK291005 AK293320 BC000334 X84709 U24231 BC025733 EU176185 AB587588 AY423721 BT006927 CR456738	1271	+	TSC_hg19_v1_chr11_+_70116795 NM_003626 NM_177423	68659	+	TSC_hg19_v1_chr11_+_70116841 BC034046 AB209314	68716	+	AY728143|ANO1|55107|anoctamin 1, calcium activated chloride channel##NM_018043|ANO1|55107|anoctamin 1, calcium activated chloride channel##NM_005247|FGF3|2248|fibroblast growth factor 3##M17446|FGF4|2249|fibroblast growth factor 4##NM_002007|FGF4|2249|fibroblast growth factor 4##NM_003824|FADD|8772|Fas (TNFRSF6)-associated via death domain##AK291005|FADD|8772|Fas (TNFRSF6)-associated via death domain##BC000334|FADD|8772|Fas (TNFRSF6)-associated via death domain##X84709|FADD|8772|Fas (TNFRSF6)-associated via death domain##U24231|FADD|8772|Fas (TNFRSF6)-associated via death domain##BC025733|FADD|8772|Fas (TNFRSF6)-associated via death domain##EU176185|FADD|8772|Fas (TNFRSF6)-associated via death domain##AY423721|FADD|8772|Fas (TNFRSF6)-associated via death domain##BT006927|FADD|8772|Fas (TNFRSF6)-associated via death domain##CR456738|FADD|8772|Fas (TNFRSF6)-associated via death domain##NM_003626|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##NM_177423|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##BC034046|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##AB209314|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	1.952817	0.0	denovo_WM_7:-35:0.580	denovo_WM_7:-37:0.279	denovo_WM_7:-54:0.309	denovo_WM_7:-55:0.309	denovo_WM_7:-56:0.313
chr10	73980521	73980650	reg1002596.p2	9.095	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-4474	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-4797	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-4821	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	53239	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	134093	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	134341	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	1.997004	0.0	denovo_WM_7:31:0.906
chr19	19709658	19709759	reg1003030.p2	9.095	+	TSC_hg19_v1_chr19_+_19649101 AK314213 AF542080	-60602	+	AK127735 BC068256 NM_153221 TSC_hg19_v1_chr19_+_19649088	-60636	+	NM_001190328 NM_198537 TSC_hg19_v1_chr19_+_19639680 AK126916 BC020948 AB464360 DQ778079 DQ778080	-70003	+	BC033067 BC143092 AK097427 AK301631 BC143588 BC143589 TSC_hg19_v1_chr19_-_19729548 BC141859 NM_025245	19873	-	AF011466 AK316573 BC025695 AF197929 TSC_hg19_v1_chr19_-_19739025 NM_004720	29299	-	BC126436 BC144142 TSC_hg19_v1_chr19_-_19754416 BC032057 AK297220 AF132541	44685	-	AK314213|CILP2|148113|cartilage intermediate layer protein 2##AF542080|CILP2|148113|cartilage intermediate layer protein 2##AK127735|CILP2|148113|cartilage intermediate layer protein 2##BC068256|CILP2|148113|cartilage intermediate layer protein 2##NM_153221|CILP2|148113|cartilage intermediate layer protein 2##NM_001190328|YJEFN3|374887|YjeF N-terminal domain containing 3##NM_198537|YJEFN3|374887|YjeF N-terminal domain containing 3##AK126916|YJEFN3|374887|YjeF N-terminal domain containing 3##BC020948|YJEFN3|374887|YjeF N-terminal domain containing 3##DQ778079|YJEFN3|374887|YjeF N-terminal domain containing 3##DQ778080|YJEFN3|374887|YjeF N-terminal domain containing 3##BC033067|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143092|PBX4|80714|pre-B-cell leukemia homeobox 4##AK097427|PBX4|80714|pre-B-cell leukemia homeobox 4##AK301631|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143588|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143589|PBX4|80714|pre-B-cell leukemia homeobox 4##BC141859|PBX4|80714|pre-B-cell leukemia homeobox 4##NM_025245|PBX4|80714|pre-B-cell leukemia homeobox 4##AF011466|LPAR2|9170|lysophosphatidic acid receptor 2##AK316573|LPAR2|9170|lysophosphatidic acid receptor 2##BC025695|LPAR2|9170|lysophosphatidic acid receptor 2##AF197929|LPAR2|9170|lysophosphatidic acid receptor 2##NM_004720|LPAR2|9170|lysophosphatidic acid receptor 2##BC126436|GMIP|51291|GEM interacting protein##BC144142|GMIP|51291|GEM interacting protein##BC032057|GMIP|51291|GEM interacting protein##AK297220|GMIP|51291|GEM interacting protein##AF132541|GMIP|51291|GEM interacting protein	0.998675	0.0	
chr10	6390160	6390317	reg1002408.p1	9.094	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-145362	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-203326	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-203354	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	232023	-	TSC_hg19_v1_chr10_+_6622460 AY007155	232242	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1061012	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.056464	0.0	
chr4	103763643	103763765	reg1002517.p1	9.094	+	TSC_hg19_v1_chr4_-_103748970 BC037894 NM_003340 NM_181886 NM_181888 BC003395 AK315775 NM_181889	-14568	-	TSC_hg19_v1_chr4_-_103748709 BC066917 NM_181887 NM_181891 AL833414	-15018	-	AK095822 TSC_hg19_v1_chr4_-_103748316 NM_181892	-15408	-	NM_181893 NM_181890	26312	-	TSC_hg19_v1_chr4_+_103790148 NM_001008388	26448	+	TSC_hg19_v1_chr4_+_103790197 AK292134 BC020831 BX537971 BC032300 AM392809 AM393385	26512	+	BC037894|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_003340|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181886|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181888|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##BC003395|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AK315775|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181889|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##BC066917|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181887|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181891|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AL833414|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AK095822|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181892|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181893|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181890|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_001008388|CISD2|493856|CDGSH iron sulfur domain 2##AK292134|CISD2|493856|CDGSH iron sulfur domain 2##BC020831|CISD2|493856|CDGSH iron sulfur domain 2##BX537971|CISD2|493856|CDGSH iron sulfur domain 2##BC032300|CISD2|493856|CDGSH iron sulfur domain 2##AM392809|CISD2|493856|CDGSH iron sulfur domain 2##AM393385|CISD2|493856|CDGSH iron sulfur domain 2	0.991337	0.0	denovo_WM_7:11:0.787
chr14	77396287	77396426	reg1003693.p1	9.090	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-103561	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-117094	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-117146	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	98328	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	98704	-	AK124327 TSC_hg19_v1_chr14_-_77542533	146177	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.0	0.0	
chr7	152209923	152210059	reg1002531.p1	9.090	+	TSC_hg19_v1_chr7_+_152161285 BC036622	-48752	+	TSC_hg19_v1_chr7_-_152133074 NM_170606	-76910	-	TSC_hg19_v1_chr7_-_152133040 AY024361	-76999	-	AB590731 CU692064 TSC_hg19_v1_chr7_-_152373227 BC042137 AK313607 Y08837 AF035587 NM_005431	163217	-	TSC_hg19_v1_chr7_+_152456872 NM_001040135 NM_020445 AK315534 BC008682 AK294292 AK316078 AF086920 BC015207 AF023453 CU677239 CU679037 DQ894754 EU176295	246902	+	TSC_hg19_v1_chr7_+_153584383 BX647966 NM_001039350	1374409	+	BC036622|LOC100128822|100128822|uncharacterized LOC100128822##NM_170606|MLL3|58508|myeloid/lymphoid or mixed-lineage leukemia 3##AY024361|MLL3|58508|myeloid/lymphoid or mixed-lineage leukemia 3##BC042137|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##AK313607|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##Y08837|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##AF035587|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##NM_005431|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##NM_001040135|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##NM_020445|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK315534|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC008682|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK294292|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK316078|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AF086920|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC015207|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AF023453|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##DQ894754|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##EU176295|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BX647966|DPP6|1804|dipeptidyl-peptidase 6##NM_001039350|DPP6|1804|dipeptidyl-peptidase 6	0.990057	0.0	denovo_WM_7:-51:0.491	denovo_WM_7:-52:0.286	denovo_WM_7:-53:0.214
chr9	129951071	129951212	reg1001910.p1	9.090	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-66111	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-66179	-	TSC_hg19_v1_chr9_-_129884914 AK074726 BC012368 AK307175	-66233	-	NM_032293 AK293732 AK095679	75666	+	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	208305	+	TSC_hg19_v1_chr9_-_130186602 AK124330	235425	-	NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##AK074726|ANGPTL2|23452|angiopoietin-like 2##BC012368|ANGPTL2|23452|angiopoietin-like 2##NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8	0.992941	0.0	denovo_WM_7:-20:0.314	denovo_WM_7:-21:0.314	denovo_WM_7:-22:0.314
chr2	105854570	105854682	reg1002973.p1	9.089	+	NM_182640 TSC_hg19_v1_chr2_+_105654526 BC036575 BC057240 AK001451 AK130078	-200112	+	TSC_hg19_v1_chr2_+_105471877 NM_006236	-382728	+	TSC_hg19_v1_chr2_-_105467912 AK096498	-386710	-	BC066879 BC066880 BC067455 NM_007227 CU688176 EU883573	3631	+	TSC_hg19_v1_chr2_-_105946156 BC020548 BC010093 NM_001142621 NM_004257	91526	-	AK304268 TSC_hg19_v1_chr2_+_105953980 AK307891	99284	+	NM_182640|MRPS9|64965|mitochondrial ribosomal protein S9##BC036575|MRPS9|64965|mitochondrial ribosomal protein S9##BC057240|MRPS9|64965|mitochondrial ribosomal protein S9##AK001451|MRPS9|64965|mitochondrial ribosomal protein S9##AK130078|MRPS9|64965|mitochondrial ribosomal protein S9##NM_006236|POU3F3|5455|POU class 3 homeobox 3##AK096498|LOC100506421|100506421|uncharacterized LOC100506421##BC066879|GPR45|11250|G protein-coupled receptor 45##BC066880|GPR45|11250|G protein-coupled receptor 45##BC067455|GPR45|11250|G protein-coupled receptor 45##NM_007227|GPR45|11250|G protein-coupled receptor 45##EU883573|GPR45|11250|G protein-coupled receptor 45##BC020548|TGFBRAP1|9392|transforming growth factor, beta receptor associated protein 1##NM_001142621|TGFBRAP1|9392|transforming growth factor, beta receptor associated protein 1##NM_004257|TGFBRAP1|9392|transforming growth factor, beta receptor associated protein 1##AK304268|C2orf49|79074|chromosome 2 open reading frame 49##AK307891|C2orf49|79074|chromosome 2 open reading frame 49	1.982232	0.992425	CTCF.p2:-38:0.992	denovo_WM_7:41:0.210	denovo_WM_7:63:0.216
chr3	156242523	156242659	reg1002951.p1	9.088	+	NM_172159 BC043166 AK127240	-233781	+	NM_003471 AK292999 L39833 U16953 U17968	-381729	+	NM_172160 L47665 AK292693 AK303287	-404240	+	TSC_hg19_v1_chr3_-_156272894 BT006669 DQ892572 DQ895788 AK304364 AK312935	30290	-	TSC_hg19_v1_chr3_-_156272919 AF087907 AF110647 BC017203 NM_007107	30352	-	NM_015508	149613	+	NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_003471|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK292999|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##L39833|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##U16953|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##U17968|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_172160|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##L47665|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK292693|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK303287|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BT006669|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ892572|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ895788|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK304364|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK312935|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF087907|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF110647|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BC017203|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_007107|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_015508|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase	1.983993	0.0	denovo_WM_7:-31:0.204	denovo_WM_7:-32:0.548	denovo_WM_7:-47:0.700
chr5	133223914	133224044	reg1000876.p2	9.083	+	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	-275741	-	TSC_hg19_v1_chr5_-_132948202 AK055684	-275780	-	TSC_hg19_v1_chr5_+_132432890 AK315862	-791088	+	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	80396	-	TSC_hg19_v1_chr5_-_133340377 BC008482	116388	-	TSC_hg19_v1_chr5_-_133340386 BC090042	116404	-	NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##AK055684|FSTL4|23105|follistatin-like 4##AK315862|HSPA4|3308|heat shock 70kDa protein 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15##BC008482|VDAC1|7416|voltage-dependent anion channel 1##BC090042|VDAC1|7416|voltage-dependent anion channel 1	0.999808	0.0	denovo_WM_7:3:0.230	denovo_WM_7:4:0.230	denovo_WM_7:5:0.230	denovo_WM_7:6:0.230
chr19	8258995	8259128	reg1001811.p3	9.082	+	AB384635 AB053450 BC153882 NM_032447	-46686	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-141114	+	AK292662 NM_001201359 NM_005624	-141416	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	15187	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	114148	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	127196	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	1.979764	0.025192	denovo_WM_7:80:0.970	denovo_WM_7:96:0.915
chr3	140582685	140582847	reg1002820.p1	9.082	+	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	-185807	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-928514	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-928748	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	78001	+	TSC_hg19_v1_chr3_+_140770412 BC051354	187712	+	AF403029 BC008324 NM_080862 AK056367	187991	+	NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AF403029|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##BC008324|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##NM_080862|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AK056367|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.996077	0.996008	CTCF.p2:-13:0.996	denovo_WM_7:45:0.835
chr8	103896486	103896613	reg1002822.p1	9.081	+	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	-20154	-	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	-20190	-	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	-228617	-	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	136718	+	TSC_hg19_v1_chr8_+_104033310 AK308632 BC010960 X69151 AK000064	136771	+	TSC_hg19_v1_chr8_+_104152984 NM_001024372 NM_024812 BC035038 AK022077 BC011517 AK093819 AF371319 AF371323 DQ893318 DQ896633	256451	+	BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1##AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK308632|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BC010960|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##X69151|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK000064|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##NM_001024372|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_024812|BAALC|79870|brain and acute leukemia, cytoplasmic##BC035038|BAALC|79870|brain and acute leukemia, cytoplasmic##AK022077|BAALC|79870|brain and acute leukemia, cytoplasmic##BC011517|BAALC|79870|brain and acute leukemia, cytoplasmic##AK093819|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371319|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371323|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ893318|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ896633|BAALC|79870|brain and acute leukemia, cytoplasmic	0.997639	0.0	denovo_WM_7:-58:0.817
chr2	111334787	111334950	reg1002919.p1	9.080	+	NM_005054 U64675	-191	-	BC094740 NM_001205288 NM_033514	-104217	-	TSC_hg19_v1_chr2_-_110970123 BC031315	-364747	-	AL136868 NM_001037866 NM_001123363 NM_032260	1440	-	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	100775	-	TSC_hg19_v1_chr2_+_111435820 BC040607	100954	+	NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##BC094740|LIMS3-LOC440895|100271835|LIMS3-LOC440895 readthrough##NM_001205288|LIMS3L|100288695|LIM and senescent cell antigen-like domains 3-like##NM_033514|LIMS3|96626|LIM and senescent cell antigen-like domains 3##BC031315|LINC00116|205251|long intergenic non-protein coding RNA 116##AL136868|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001037866|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_001123363|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_032260|RGPD5|84220|RANBP2-like and GRIP domain containing 5##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)	0.0	0.0	
chr13	53300569	53300745	reg1003113.p2	9.079	+	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	-73715	+	TSC_hg19_v1_chr13_+_53216565 BC108266	-84092	+	TSC_hg19_v1_chr13_+_53191659 NM_001011724 NM_001011725 BC007108 AK123159 BC082242	-109020	+	AB006000 CR541910 TSC_hg19_v1_chr13_-_53313891	13207	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	13305	-	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	122118	-	NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC108266|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011724|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011725|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AK123159|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##BC082242|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AB006000|LECT1|11061|leukocyte cell derived chemotaxin 1##CR541910|LECT1|11061|leukocyte cell derived chemotaxin 1##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8	0.997242	0.0	denovo_WM_7:-4:0.858
chr12	105368448	105368628	reg1002535.p2	9.078	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	-46275	-	TSC_hg19_v1_chr12_+_105153261 AF131762	-215261	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-517451	+	TSC_hg19_v1_chr12_+_105380107 NM_152318	11552	+	TSC_hg19_v1_chr12_+_105380115 BC032326 CU689336 DQ891649 DQ894838	11583	+	TSC_hg19_v1_chr12_-_105478356 EU832777 GQ129303 AK095827 AK300373 BC103934 BC103935 NM_001034173	109777	-	AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45##BC032326|C12orf45|121053|chromosome 12 open reading frame 45##DQ891649|C12orf45|121053|chromosome 12 open reading frame 45##DQ894838|C12orf45|121053|chromosome 12 open reading frame 45##EU832777|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##GQ129303|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##AK095827|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##AK300373|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##BC103934|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##BC103935|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2##NM_001034173|ALDH1L2|160428|aldehyde dehydrogenase 1 family, member L2	0.990995	0.0	denovo_WM_7:-56:0.716
chr6	97333212	97333333	reg1002566.p1	9.078	+	TSC_hg19_v1_chr6_-_97285392 AB030566 AK313535 AB209347 AK289839 NM_001143957 NM_030784	-48041	-	NM_001170807 NM_020482 AK058175 BC029490 BC021723 AK223539	-322803	+	TSC_hg19_v1_chr6_+_96969734 AB018319 CU690338	-363533	+	HQ257923 TSC_hg19_v1_chr6_-_97345742 AF060508 AK311850 BC039464	12438	-	TSC_hg19_v1_chr6_-_97345751 BC018802 AF161474	12480	-	TSC_hg19_v1_chr6_-_97345768 NM_014165	12492	-	AB030566|GPR63|81491|G protein-coupled receptor 63##AK313535|GPR63|81491|G protein-coupled receptor 63##AB209347|GPR63|81491|G protein-coupled receptor 63##AK289839|GPR63|81491|G protein-coupled receptor 63##NM_001143957|GPR63|81491|G protein-coupled receptor 63##NM_030784|GPR63|81491|G protein-coupled receptor 63##NM_001170807|FHL5|9457|four and a half LIM domains 5##NM_020482|FHL5|9457|four and a half LIM domains 5##AK058175|FHL5|9457|four and a half LIM domains 5##BC029490|FHL5|9457|four and a half LIM domains 5##BC021723|FHL5|9457|four and a half LIM domains 5##AK223539|FHL5|9457|four and a half LIM domains 5##AB018319|UFL1|23376|UFM1-specific ligase 1##HQ257923|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AF060508|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AK311850|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##BC039464|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##BC018802|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AF161474|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##NM_014165|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	0.998503	0.0	denovo_WM_7:-58:0.442	denovo_WM_7:-59:0.442
chr19	53046402	53046549	reg1003549.p1	9.076	+	CR749856 TSC_hg19_v1_chr19_+_53030941 NM_001039886	-15546	+	AB091373 AB091374 AK299106 NM_001099694 TSC_hg19_v1_chr19_+_52956836 AL833487 AB091376 AB091375	-89648	+	AB086839 AB086840 AB091368 AB091369 NM_001143938 NM_001143939	-111809	+	TSC_hg19_v1_chr19_+_53073539 NM_018260 AK001753 BC131719 BC136425 BC136426 BC054884 BC080612	27067	+	BC067346 NM_001172655	27441	+	TSC_hg19_v1_chr19_-_53141603 BC032867 AK027518 NM_001105549 NM_001105550 NM_001105551 NM_001105552 NM_001105553 NM_001105554 NM_018300	95149	-	CR749856|ZNF808|388558|zinc finger protein 808##NM_001039886|ZNF808|388558|zinc finger protein 808##AB091373|ZNF578|147660|zinc finger protein 578##AB091374|ZNF578|147660|zinc finger protein 578##AK299106|ZNF578|147660|zinc finger protein 578##NM_001099694|ZNF578|147660|zinc finger protein 578##AB091376|ZNF578|147660|zinc finger protein 578##AB091375|ZNF578|147660|zinc finger protein 578##AB086839|ZNF534|147658|zinc finger protein 534##AB086840|ZNF534|147658|zinc finger protein 534##NM_001143938|ZNF534|147658|zinc finger protein 534##NM_001143939|ZNF534|147658|zinc finger protein 534##NM_018260|ZNF701|55762|zinc finger protein 701##AK001753|ZNF701|55762|zinc finger protein 701##BC131719|ZNF701|55762|zinc finger protein 701##BC136425|ZNF701|55762|zinc finger protein 701##BC136426|ZNF701|55762|zinc finger protein 701##BC054884|ZNF701|55762|zinc finger protein 701##BC080612|ZNF701|55762|zinc finger protein 701##BC067346|ZNF701|55762|zinc finger protein 701##NM_001172655|ZNF701|55762|zinc finger protein 701##BC032867|ZNF83|55769|zinc finger protein 83##AK027518|ZNF83|55769|zinc finger protein 83##NM_001105549|ZNF83|55769|zinc finger protein 83##NM_001105550|ZNF83|55769|zinc finger protein 83##NM_001105551|ZNF83|55769|zinc finger protein 83##NM_001105552|ZNF83|55769|zinc finger protein 83##NM_001105553|ZNF83|55769|zinc finger protein 83##NM_001105554|ZNF83|55769|zinc finger protein 83##NM_018300|ZNF83|55769|zinc finger protein 83	0.015934	0.0	
chr3	39425922	39426062	reg1002774.p1	9.076	+	TSC_hg19_v1_chr3_+_39424860 NM_017875 AK000558 AK225388 BC013194 CR457242	-1002	+	AK314957 NM_005201 AF005210 BC107152 BC107159 D49919 BC074743	-54747	+	TSC_hg19_v1_chr3_-_39323217 AB464486 NM_001171174	-102785	-	BC070263 NM_002295 TSC_hg19_v1_chr3_+_39448210 BC066941 BC107567 BC005391 BC062714 D28372 AF503367 BC013827 BC050688 X15005 BC034537 BC053370 BC071968 BC010418 BC071693 BC018867 BC071969 BC073863	22218	+	BC071970 J03799 NM_001012321 BC068062 BC008867 S37431 DQ891146 DQ894326 AB464170 BT007219 CU679157 CU688210 X61156	23150	+	NM_182935 BC075796 AK127034 AK290187 BC022471	83127	+	NM_017875|SLC25A38|54977|solute carrier family 25, member 38##AK000558|SLC25A38|54977|solute carrier family 25, member 38##AK225388|SLC25A38|54977|solute carrier family 25, member 38##BC013194|SLC25A38|54977|solute carrier family 25, member 38##CR457242|SLC25A38|54977|solute carrier family 25, member 38##AK314957|CCR8|1237|chemokine (C-C motif) receptor 8##NM_005201|CCR8|1237|chemokine (C-C motif) receptor 8##AF005210|CCR8|1237|chemokine (C-C motif) receptor 8##BC107152|CCR8|1237|chemokine (C-C motif) receptor 8##BC107159|CCR8|1237|chemokine (C-C motif) receptor 8##D49919|CCR8|1237|chemokine (C-C motif) receptor 8##BC074743|CCR8|1237|chemokine (C-C motif) receptor 8##NM_001171174|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##BC070263|RPSA|3921|ribosomal protein SA##NM_002295|RPSA|3921|ribosomal protein SA##BC066941|RPSA|3921|ribosomal protein SA##BC107567|RPSA|3921|ribosomal protein SA##BC005391|RPSA|3921|ribosomal protein SA##BC062714|RPSA|3921|ribosomal protein SA##AF503367|RPSA|3921|ribosomal protein SA##BC013827|RPSA|3921|ribosomal protein SA##BC050688|RPSA|3921|ribosomal protein SA##X15005|RPSA|3921|ribosomal protein SA##BC034537|RPSA|3921|ribosomal protein SA##BC053370|RPSA|3921|ribosomal protein SA##BC071968|RPSA|3921|ribosomal protein SA##BC010418|RPSA|3921|ribosomal protein SA##BC071693|RPSA|3921|ribosomal protein SA##BC018867|RPSA|3921|ribosomal protein SA##BC071969|RPSA|3921|ribosomal protein SA##BC073863|RPSA|3921|ribosomal protein SA##BC071970|RPSA|3921|ribosomal protein SA##J03799|RPSA|3921|ribosomal protein SA##NM_001012321|RPSA|3921|ribosomal protein SA##BC068062|RPSA|3921|ribosomal protein SA##BC008867|RPSA|3921|ribosomal protein SA##S37431|RPSA|3921|ribosomal protein SA##DQ891146|RPSA|3921|ribosomal protein SA##DQ894326|RPSA|3921|ribosomal protein SA##BT007219|RPSA|3921|ribosomal protein SA##X61156|RPSA|3921|ribosomal protein SA##NM_182935|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC075796|MOBP|4336|myelin-associated oligodendrocyte basic protein##AK127034|MOBP|4336|myelin-associated oligodendrocyte basic protein##AK290187|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC022471|MOBP|4336|myelin-associated oligodendrocyte basic protein	0.99805	0.023778	denovo_WM_7:13:0.781
chr9	92151354	92151532	reg1002322.p1	9.076	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-38436	-	BC054500 NM_001142287 NM_006378	-56833	-	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	-218025	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	68538	+	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	1253676	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	1412593	+	BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase	0.839154	0.0	denovo_WM_7:37:0.643
chr20	32240367	32240500	reg1002779.p2	9.075	+	BC015066 NM_001039709 NM_005093 AF069747 AF052212	-90256	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	-162462	+	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	-162597	+	DQ080434 NM_080825 BC032818	9682	+	NM_001024675 BC137111 BC137114	13880	+	TSC_hg19_v1_chr20_-_32262195 AF193759 AK291895 BC023270 AF409141 BC047673 AK023706 AK309285	21763	-	BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##DQ080434|C20orf144|128864|chromosome 20 open reading frame 144##NM_080825|C20orf144|128864|chromosome 20 open reading frame 144##BC032818|C20orf144|128864|chromosome 20 open reading frame 144##NM_001024675|ACTL10|170487|actin-like 10##BC137111|ACTL10|170487|actin-like 10##BC137114|ACTL10|170487|actin-like 10##AF193759|NECAB3|63941|N-terminal EF-hand calcium binding protein 3##AK291895|NECAB3|63941|N-terminal EF-hand calcium binding protein 3##BC023270|NECAB3|63941|N-terminal EF-hand calcium binding protein 3##AF409141|NECAB3|63941|N-terminal EF-hand calcium binding protein 3##BC047673|NECAB3|63941|N-terminal EF-hand calcium binding protein 3##AK023706|NECAB3|63941|N-terminal EF-hand calcium binding protein 3##AK309285|NECAB3|63941|N-terminal EF-hand calcium binding protein 3	2.018474	0.013282	denovo_WM_7:-68:0.270	denovo_WM_7:-69:0.727	denovo_WM_7:-84:0.860
chr2	203130263	203130401	reg1002741.p3	9.075	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	-27064	-	AB017365 NM_003507 AB010881 BC015915 CU677505	-230993	+	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	-459040	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	124	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	240	+	TSC_hg19_v1_chr2_+_203241049 NM_001204	110714	+	X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)	1.568683	0.0	denovo_WM_7:-26:0.587	denovo_WM_7:-37:0.214	denovo_WM_7:-41:0.585
chr2	132615927	132616044	reg1002896.p1	9.074	+	BC043584 NM_214461	-56752	-	AF038169 NM_013310	-135922	+	BC063387 AB299086 AB299087 BC016861 NM_138770 CU677751 CU687684	-330479	+	AK122643 NM_001508	558161	+	AY358628 BC017318 AK309849 AK075487 TSC_hg19_v1_chr2_-_133427783 AK130005 AK094501 AK123029	811718	-	NM_144586	812495	-	BC043584|C2orf27B|408029|chromosome 2 open reading frame 27B##NM_214461|C2orf27B|408029|chromosome 2 open reading frame 27B##AF038169|C2orf27A|29798|chromosome 2 open reading frame 27A##NM_013310|C2orf27A|29798|chromosome 2 open reading frame 27A##BC063387|CCDC74A|90557|coiled-coil domain containing 74A##AB299086|CCDC74A|90557|coiled-coil domain containing 74A##AB299087|CCDC74A|90557|coiled-coil domain containing 74A##BC016861|CCDC74A|90557|coiled-coil domain containing 74A##NM_138770|CCDC74A|90557|coiled-coil domain containing 74A##AK122643|GPR39|2863|G protein-coupled receptor 39##NM_001508|GPR39|2863|G protein-coupled receptor 39##AY358628|LYPD1|116372|LY6/PLAUR domain containing 1##BC017318|LYPD1|116372|LY6/PLAUR domain containing 1##AK309849|LYPD1|116372|LY6/PLAUR domain containing 1##AK075487|LYPD1|116372|LY6/PLAUR domain containing 1##AK130005|LYPD1|116372|LY6/PLAUR domain containing 1##AK094501|LYPD1|116372|LY6/PLAUR domain containing 1##AK123029|LYPD1|116372|LY6/PLAUR domain containing 1##NM_144586|LYPD1|116372|LY6/PLAUR domain containing 1	0.989383	0.014948	denovo_WM_7:28:0.951
chr6	137942851	137942969	reg1002374.p2	9.074	+	BC051352 AK096362 NM_175747	-127385	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-402352	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-402365	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	245627	+	TSC_hg19_v1_chr6_-_138189314 AK124173	246440	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	485658	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	0.996759	0.0	denovo_WM_7:25:0.438	denovo_WM_7:26:0.438
chr6	14277269	14277426	reg1002780.p2	9.074	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-159325	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-159442	+	NM_001251901	-159861	+	TSC_hg19_v1_chr6_+_15245702 AK302624	968370	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	969065	+	BC033996 TSC_hg19_v1_chr6_-_15248900	971554	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	0.045304	0.0	
chr19	48103802	48103979	reg1002861.p2	9.073	+	NM_001101419	-44778	-	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-85475	-	BC007432 TSC_hg19_v1_chr19_-_48018290 AK292244 AK310114 AY927608 BC001165 AY927609 BC091511	-85594	-	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	7554	+	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	112760	+	NM_015710 TSC_hg19_v1_chr19_+_48248797	144904	+	NM_001101419|ZNF541|84215|zinc finger protein 541##BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC007432|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK292244|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310114|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC001165|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AY927609|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC091511|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2##NM_015710|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2	0.0	0.0	
chr19	9988970	9989128	reg1002967.p2	9.073	+	BC031971 TSC_hg19_v1_chr19_+_9946188	-42885	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	-43098	+	TSC_hg19_v1_chr19_+_9938597 AK309258 AF313915 BC007053 BC110839	-50436	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	58075	-	TSC_hg19_v1_chr19_-_10121181 AF177941 NM_015719	132094	-	DQ426888 AF229845 NM_015725	134843	+	BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK309258|UBL5|59286|ubiquitin-like 5##AF313915|UBL5|59286|ubiquitin-like 5##BC007053|UBL5|59286|ubiquitin-like 5##BC110839|UBL5|59286|ubiquitin-like 5##DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2##AF177941|COL5A3|50509|collagen, type V, alpha 3##NM_015719|COL5A3|50509|collagen, type V, alpha 3##AF229845|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_015725|RDH8|50700|retinol dehydrogenase 8 (all-trans)	1.105837	0.0	
chr3	45053610	45053735	reg1003121.p1	9.073	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	-35912	+	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	-35935	+	BC015467 TSC_hg19_v1_chr3_-_45017670 AF247703 NM_001135179 NM_016598	-36031	-	AK312093 NM_003278 X64559 TSC_hg19_v1_chr3_+_45067794 BC011024 CU679874 CR541981 CR542009	14130	+	AB527383 CU676820 TSC_hg19_v1_chr3_-_45187791	134114	-	TSC_hg19_v1_chr3_-_45187849 AY375452 AY026461	134179	-	BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##BC015467|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AF247703|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_001135179|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_016598|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AK312093|CLEC3B|7123|C-type lectin domain family 3, member B##NM_003278|CLEC3B|7123|C-type lectin domain family 3, member B##X64559|CLEC3B|7123|C-type lectin domain family 3, member B##BC011024|CLEC3B|7123|C-type lectin domain family 3, member B##CR541981|CLEC3B|7123|C-type lectin domain family 3, member B##CR542009|CLEC3B|7123|C-type lectin domain family 3, member B##AY375452|CDCP1|64866|CUB domain containing protein 1##AY026461|CDCP1|64866|CUB domain containing protein 1	0.967245	0.0	denovo_WM_7:-6:0.603	denovo_WM_7:-9:0.214
chr2	198172170	198172339	reg1002832.p1	9.072	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-380810	-	BC137150 BC137151 AY358249 NM_213608	-497317	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-507841	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	3128	-	TSC_hg19_v1_chr2_-_198175459 BC063622	3219	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	3265	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.998624	0.0	denovo_WM_7:29:0.435	denovo_WM_7:30:0.435
chrX	96091028	96091174	reg1002371.p2	9.072	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	-151147	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	-151350	+	NM_001171109 NM_001171110 NM_001171111 NM_173698	-3162090	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	47869	+	EF676096 NM_001105243 NM_001184880 NM_020766 TSC_hg19_v1_chrX_-_99665272	3574172	-	NM_022144 AF191770 BC034030 AF291656 AF234259 AY358706 AB055421 AB590911 CU689814	3748800	+	BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_001171109|FAM133A|286499|family with sequence similarity 133, member A##NM_001171110|FAM133A|286499|family with sequence similarity 133, member A##NM_001171111|FAM133A|286499|family with sequence similarity 133, member A##NM_173698|FAM133A|286499|family with sequence similarity 133, member A##NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa##EF676096|PCDH19|57526|protocadherin 19##NM_001105243|PCDH19|57526|protocadherin 19##NM_001184880|PCDH19|57526|protocadherin 19##NM_020766|PCDH19|57526|protocadherin 19##NM_022144|TNMD|64102|tenomodulin##AF191770|TNMD|64102|tenomodulin##BC034030|TNMD|64102|tenomodulin##AF291656|TNMD|64102|tenomodulin##AF234259|TNMD|64102|tenomodulin##AY358706|TNMD|64102|tenomodulin##AB055421|TNMD|64102|tenomodulin	0.934101	0.0	denovo_WM_7:5:0.289	denovo_WM_7:6:0.631
chr1	186378243	186378420	reg1003063.p1	9.071	+	BC069096 NM_022375	-8628	+	NM_001164245 NM_001164246 NM_017847 TSC_hg19_v1_chr1_+_186344992 AK298107 AK000512 AY854248 BC003397	-33359	+	TSC_hg19_v1_chr1_-_186344848 AK309473	-33490	-	AF076464 NM_022576	39524	-	M33478 NM_002597	51896	-	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	271159	-	BC069096|OCLM|10896|oculomedin##NM_022375|OCLM|10896|oculomedin##NM_001164245|C1orf27|54953|chromosome 1 open reading frame 27##NM_001164246|C1orf27|54953|chromosome 1 open reading frame 27##NM_017847|C1orf27|54953|chromosome 1 open reading frame 27##AK298107|C1orf27|54953|chromosome 1 open reading frame 27##AK000512|C1orf27|54953|chromosome 1 open reading frame 27##AY854248|C1orf27|54953|chromosome 1 open reading frame 27##BC003397|C1orf27|54953|chromosome 1 open reading frame 27##AK309473|TPR|7175|translocated promoter region (to activated MET oncogene)##AF076464|PDC|5132|phosducin##NM_022576|PDC|5132|phosducin##M33478|PDC|5132|phosducin##NM_002597|PDC|5132|phosducin##AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	0.991731	0.0	denovo_WM_7:1:0.331	denovo_WM_7:2:0.331	denovo_WM_7:3:0.331
chr7	126428755	126428935	reg1003245.p1	9.071	+	NM_001042594 NM_015450	-1858809	-	BC130600 BC130604 NM_001024603	-1998043	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-2023049	-	NM_000845	454723	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	463520	-	TSC_hg19_v1_chr7_-_126893165 AK290197	464307	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	1.907383	0.0	denovo_WM_7:5:0.787	denovo_WM_7:29:0.690
chr8	63795952	63796110	reg1002466.p1	9.069	+	TSC_hg19_v1_chr8_+_63161499 AK096949 NM_173688 AX721226 AB463913	-634467	+	TSC_hg19_v1_chr8_+_63161185 AK299689	-634825	+	TSC_hg19_v1_chr8_-_62627167 NM_001164754 NM_001164755 NM_001164756 NM_004318 NM_032466	-1168842	-	AK290450 TSC_hg19_v1_chr8_-_63951364 AK301094 U55206 BC025025	155367	-	NM_003878	155578	-	CU691280 U21938 TSC_hg19_v1_chr8_-_63998613 BC041784 D49488 BC058000 NM_000370	202596	-	AK096949|NKAIN3|286183|Na+/K+ transporting ATPase interacting 3##NM_173688|NKAIN3|286183|Na+/K+ transporting ATPase interacting 3##AK299689|NKAIN3|286183|Na+/K+ transporting ATPase interacting 3##NM_001164754|ASPH|444|aspartate beta-hydroxylase##NM_001164755|ASPH|444|aspartate beta-hydroxylase##NM_001164756|ASPH|444|aspartate beta-hydroxylase##NM_004318|ASPH|444|aspartate beta-hydroxylase##NM_032466|ASPH|444|aspartate beta-hydroxylase##AK290450|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##AK301094|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##U55206|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##BC025025|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##NM_003878|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##U21938|TTPA|7274|tocopherol (alpha) transfer protein##BC041784|TTPA|7274|tocopherol (alpha) transfer protein##D49488|TTPA|7274|tocopherol (alpha) transfer protein##BC058000|TTPA|7274|tocopherol (alpha) transfer protein##NM_000370|TTPA|7274|tocopherol (alpha) transfer protein	0.992561	0.0	denovo_WM_7:-5:0.479	denovo_WM_7:-6:0.479
chr17	5103895	5104075	reg1002578.p2	9.068	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-8605	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-8812	-	AY143550 NM_004505 X63546 X63547	-72299	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	34116	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	81681	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	218940	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.992299	0.0	denovo_WM_7:17:0.313	denovo_WM_7:18:0.313	denovo_WM_7:19:0.313
chr15	77280511	77280680	reg1002302.p1	9.066	+	TSC_hg19_v1_chr15_+_77224095 NM_002902 AK313833 X78669 BC004892 BT009790 CU678788	-56523	+	AB040887 TSC_hg19_v1_chr15_-_77197781 AK056095	-82824	-	TSC_hg19_v1_chr15_-_77197682 BC070197 BC107415 AK056515	-82931	-	TSC_hg19_v1_chr15_+_77287465 AK309856 NM_003978 AK310126 BC008602	6895	+	AK304052 U94778 AK316220 TSC_hg19_v1_chr15_+_77287720 AK298733	7111	+	TSC_hg19_v1_chr15_+_77287743 AK310072 AB451310 AB451440 AF038602 AF038603 DQ891779 DQ894963 AB528365	7232	+	NM_002902|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AK313833|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##X78669|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BC004892|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BT009790|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AB040887|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056095|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC070197|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC107415|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056515|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK309856|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##NM_003978|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310126|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##BC008602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK304052|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##U94778|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK316220|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK298733|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310072|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451310|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451440|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038603|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ891779|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ894963|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1	0.999854	0.0	
chr17	40176749	40176924	reg1003080.p1	9.066	+	TSC_hg19_v1_chr17_+_40172124 AK027265 AK297975 AK054571 BC007316 BC007450	-4690	+	NM_001144927 NM_001144928 NM_001144929 NM_017595 TSC_hg19_v1_chr17_+_40172107	-4738	+	BX647209 NM_003315	-7144	-	NM_001242704	13207	-	BC014949 AK296840 AK300900 AK021416 AK225549 NM_024119	87882	-	TSC_hg19_v1_chr17_-_40273386 AB527835 AF029777 BC032743 BC105977 BC039907 NM_021078	96513	-	AK027265|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##AK297975|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##AK054571|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC007316|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC007450|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144927|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144928|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144929|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_017595|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BX647209|DNAJC7|7266|DnaJ (Hsp40) homolog, subfamily C, member 7##NM_003315|DNAJC7|7266|DnaJ (Hsp40) homolog, subfamily C, member 7##NM_001242704|ZNF385C|201181|zinc finger protein 385C##BC014949|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK296840|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK300900|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK021416|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK225549|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##NM_024119|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AF029777|KAT2A|2648|K(lysine) acetyltransferase 2A##BC032743|KAT2A|2648|K(lysine) acetyltransferase 2A##BC105977|KAT2A|2648|K(lysine) acetyltransferase 2A##BC039907|KAT2A|2648|K(lysine) acetyltransferase 2A##NM_021078|KAT2A|2648|K(lysine) acetyltransferase 2A	0.998856	0.0	denovo_WM_7:-34:0.390	denovo_WM_7:-36:0.388
chr7	69642811	69642905	reg1002167.p1	9.066	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-578270	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-578529	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-579022	+	TSC_hg19_v1_chr7_+_70231164 AK296981	588347	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	954930	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2158920	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.983192	0.0	denovo_WM_7:54:0.492	denovo_WM_7:55:0.492
chrX	40595358	40595495	reg1002186.p1	9.066	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-297	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-446	-	TSC_hg19_v1_chrX_-_40594795 AB006651 AF304448 BC098377 NM_004229	-638	-	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	349446	+	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	597224	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	598031	+	AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AB006651|MED14|9282|mediator complex subunit 14##AF304448|MED14|9282|mediator complex subunit 14##BC098377|MED14|9282|mediator complex subunit 14##NM_004229|MED14|9282|mediator complex subunit 14##NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	0.99867	0.0	denovo_WM_7:41:0.308	denovo_WM_7:42:0.618
chr12	112847410	112847539	reg1003398.p1	9.065	+	TSC_hg19_v1_chr12_-_112847411 BC022444 X69391 BC004138 BC104824 BC104826 AK308680 NM_000970 NM_001024662	-69	-	TSC_hg19_v1_chr12_-_112819755 NM_001109662	-27649	-	TSC_hg19_v1_chr12_-_112630525 AF174498	-216946	-	NM_002834 TSC_hg19_v1_chr12_+_112856698	9142	+	TSC_hg19_v1_chr12_+_112856714 BC008692 L08807	9253	+	TSC_hg19_v1_chr12_+_112856757 AK289854 D13540 L07527 X70766 L03535 AB384730	9361	+	BC022444|RPL6|6128|ribosomal protein L6##X69391|RPL6|6128|ribosomal protein L6##BC004138|RPL6|6128|ribosomal protein L6##BC104824|RPL6|6128|ribosomal protein L6##BC104826|RPL6|6128|ribosomal protein L6##NM_000970|RPL6|6128|ribosomal protein L6##NM_001024662|RPL6|6128|ribosomal protein L6##NM_001109662|C12orf51|283450|chromosome 12 open reading frame 51##AF174498|C12orf51|283450|chromosome 12 open reading frame 51##NM_002834|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##BC008692|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##L08807|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##AK289854|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##D13540|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##L07527|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##X70766|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##L03535|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11	0.0	0.0	
chr16	31006707	31006850	reg1002221.p4	9.065	+	TSC_hg19_v1_chr16_+_30996538 NM_001142777 NM_001142778 NM_025193 AK057436 BC004929 AK290950 AK292068	-10249	+	TSC_hg19_v1_chr16_+_30969464 BC108673	-37241	+	AB002337 NM_014712	-38164	+	AB527655 AY995211 BC062298 AY028792 NM_052874 TSC_hg19_v1_chr16_-_31021950	15071	-	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	37638	+	TSC_hg19_v1_chr16_+_31044856 AK315716	38077	+	NM_001142777|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_001142778|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_025193|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK057436|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##BC004929|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK290950|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK292068|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AB002337|SETD1A|9739|SET domain containing 1A##NM_014712|SETD1A|9739|SET domain containing 1A##AY995211|STX1B|112755|syntaxin 1B##BC062298|STX1B|112755|syntaxin 1B##AY028792|STX1B|112755|syntaxin 1B##NM_052874|STX1B|112755|syntaxin 1B##AK091833|STX4|6810|syntaxin 4##AK315716|STX4|6810|syntaxin 4	0.988482	0.0	denovo_WM_7:42:0.462	denovo_WM_7:43:0.412
chr2	97193897	97194052	reg1002278.p1	9.065	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-192438	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-192498	+	NM_178495 NM_001163524 BC034503	-202026	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	8511	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	110045	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	110093	-	BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	1.025455	0.0	denovo_WM_7:41:0.945
chr14	65099507	65099624	reg1002634.p1	9.064	+	TSC_hg19_v1_chr14_+_65016678 AK058044 NM_172365 BC068989	-82920	+	TSC_hg19_v1_chr14_+_65007458 AK097824 BC036107 BC034365 AB527255 BT009815 CU674866 DQ892538 DQ895749	-92073	+	TSC_hg19_v1_chr14_+_65007187 NM_021979	-92331	+	TSC_hg19_v1_chr14_+_65171178 BX248779 NM_015549	71607	+	TSC_hg19_v1_chr14_+_65171243 BC129952 BC129953	71713	+	AB384944 BC136284 BC136285 NM_000347 NM_001024858	190273	-	AK058044|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##NM_172365|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##BC068989|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##AK097824|HSPA2|3306|heat shock 70kDa protein 2##BC036107|HSPA2|3306|heat shock 70kDa protein 2##BC034365|HSPA2|3306|heat shock 70kDa protein 2##BT009815|HSPA2|3306|heat shock 70kDa protein 2##DQ892538|HSPA2|3306|heat shock 70kDa protein 2##DQ895749|HSPA2|3306|heat shock 70kDa protein 2##NM_021979|HSPA2|3306|heat shock 70kDa protein 2##BX248779|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##NM_015549|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##BC129952|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##BC129953|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##BC136284|SPTB|6710|spectrin, beta, erythrocytic##BC136285|SPTB|6710|spectrin, beta, erythrocytic##NM_000347|SPTB|6710|spectrin, beta, erythrocytic##NM_001024858|SPTB|6710|spectrin, beta, erythrocytic	1.944548	0.0	denovo_WM_7:55:0.858	denovo_WM_7:70:0.859
chr15	77702321	77702474	reg1002889.p1	9.062	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-229669	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-338853	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-338914	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	10146	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	10634	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	10865	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	1.773268	0.0	denovo_WM_7:-7:0.416	denovo_WM_7:28:0.858
chr2	240965237	240965412	reg1002589.p2	9.062	+	TSC_hg19_v1_chr2_-_240964807 NM_004544	-512	-	AF453834 TSC_hg19_v1_chr2_-_240964750 CU678462 DQ891011 DQ894191 BC031332 AF087661 AB209440 AK290778 BC003417 AF087854	-563	-	TSC_hg19_v1_chr2_-_240323341 AK308791	-641976	-	NM_001005853 BC137561 BC137562	4551	-	NM_001080835	17074	-	NM_173351	20164	-	NM_004544|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF453834|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ891011|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ894191|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC031332|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087661|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AB209440|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK290778|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC003417|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087854|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK308791|HDAC4|9759|histone deacetylase 4##NM_001005853|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##BC137561|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##BC137562|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##NM_001080835|PRR21|643905|proline rich 21##NM_173351|OR6B3|150681|olfactory receptor, family 6, subfamily B, member 3	2.052396	0.0	denovo_WM_7:72:0.201
chr5	55376693	55376873	reg1001818.p3	9.062	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-86020	-	NM_001242636 NM_001242639	-227634	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-229514	+	AK123389 NM_024669	152402	-	NM_005921	734116	+	TSC_hg19_v1_chr5_+_56111375 AK307828	734581	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.204967	0.0	
chr14	78008386	78008548	reg1002916.p1	9.060	+	BX248771 BX248277 BX248770 AK056709 AK291600 AK300214 BC101019 BC101020 BC101021 BC101022 CR749863 AJ583024 AK075445 NM_182509 NM_199296	-43313	-	TSC_hg19_v1_chr14_+_77924438 BC000321 AK313824 AF164791	-84025	+	TSC_hg19_v1_chr14_+_77924412 NM_012111 AK300766 AJ243310	-84077	+	CU675001 DQ893297 DQ896786 TSC_hg19_v1_chr14_-_78082949	74468	-	Y08686 TSC_hg19_v1_chr14_-_78082981 BC005123	74527	-	AB011098 NM_004863 TSC_hg19_v1_chr14_-_78083124	74659	-	BX248771|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248277|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248770|ISM2|145501|isthmin 2 homolog (zebrafish)##AK056709|ISM2|145501|isthmin 2 homolog (zebrafish)##AK291600|ISM2|145501|isthmin 2 homolog (zebrafish)##AK300214|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101019|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101020|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101021|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101022|ISM2|145501|isthmin 2 homolog (zebrafish)##CR749863|ISM2|145501|isthmin 2 homolog (zebrafish)##AJ583024|ISM2|145501|isthmin 2 homolog (zebrafish)##AK075445|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_182509|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_199296|ISM2|145501|isthmin 2 homolog (zebrafish)##BC000321|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK313824|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AF164791|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##NM_012111|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK300766|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AJ243310|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##DQ893297|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##DQ896786|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##Y08686|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##BC005123|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##AB011098|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##NM_004863|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2	1.974776	0.0	denovo_WM_7:45:0.977	denovo_WM_7:-52:0.921
chr16	21672661	21672799	reg1003099.p2	9.060	+	AJ223183 TSC_hg19_v1_chr16_-_21663991 NM_005849	-8754	-	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	-8810	-	AF151839 TSC_hg19_v1_chr16_+_21611174	-61576	+	BC129993 NM_144672 BC129992	17105	+	AK125840 NM_001161683	23019	+	AK093062 AX747895 NM_170664 BC040551 AK302733	43587	+	AJ223183|IGSF6|10261|immunoglobulin superfamily, member 6##NM_005849|IGSF6|10261|immunoglobulin superfamily, member 6##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6##AF151839|METTL9|51108|methyltransferase like 9##BC129993|OTOA|146183|otoancorin##NM_144672|OTOA|146183|otoancorin##BC129992|OTOA|146183|otoancorin##AK125840|OTOA|146183|otoancorin##NM_001161683|OTOA|146183|otoancorin##AK093062|OTOA|146183|otoancorin##NM_170664|OTOA|146183|otoancorin##BC040551|OTOA|146183|otoancorin##AK302733|OTOA|146183|otoancorin	0.999676	0.0	
chr19	36419435	36419520	reg1000277.p1	9.059	+	TSC_hg19_v1_chr19_-_36399212 NM_001173514 NM_001173515 NM_003332 NM_198125	-20264	-	TSC_hg19_v1_chr19_-_36399198 AF019562 BC011175 AK290385	-20285	-	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	-20327	-	BC003578 NM_024509	8544	+	TSC_hg19_v1_chr19_+_36486091 NM_001042631 BC007205 BC064605 BC069054 BC137516 BC137517	66617	+	CU690916 AK093764 AX748293 NM_001039876 BC052573 BC038360	80161	-	NM_001173514|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_001173515|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_003332|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_198125|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC003578|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_024509|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_001042631|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC007205|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC064605|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC069054|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137516|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137517|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##AK093764|C19orf46|163183|chromosome 19 open reading frame 46##NM_001039876|C19orf46|163183|chromosome 19 open reading frame 46##BC052573|C19orf46|163183|chromosome 19 open reading frame 46##BC038360|C19orf46|163183|chromosome 19 open reading frame 46	0.997445	0.0	denovo_WM_7:-2:0.816
chr6	108371196	108371318	reg1002806.p2	9.059	+	TSC_hg19_v1_chr6_-_108279413 NM_007214	-91811	-	TSC_hg19_v1_chr6_-_108279378 BC023598	-91865	-	TSC_hg19_v1_chr6_-_108279366 BC009066	-91888	-	TSC_hg19_v1_chr6_-_108395868 AK075012	24606	-	TSC_hg19_v1_chr6_-_108395920 BC068581	24663	-	TSC_hg19_v1_chr6_-_108395924 AF533891 AY358795 BC059412 AK129854	24673	-	NM_007214|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC023598|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC009066|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK075012|OSTM1|28962|osteopetrosis associated transmembrane protein 1##BC068581|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AF533891|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AY358795|OSTM1|28962|osteopetrosis associated transmembrane protein 1##BC059412|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AK129854|OSTM1|28962|osteopetrosis associated transmembrane protein 1	0.0	0.952886	CTCF.p2:-3:0.953
chr3	45902628	45902808	reg1002871.p1	9.054	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-19123	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-64570	-	BC036073 TSC_hg19_v1_chr3_-_45838029 NM_020208 NM_022405	-64688	-	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	25337	+	NM_006564 Y13248	82254	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	134603	-	BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##BC036073|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_020208|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_022405|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1	0.999496	0.0	denovo_WM_7:-6:0.922
chr14	39639531	39639711	reg1003178.p1	9.053	+	AK310730 TSC_hg19_v1_chr14_-_39639538 AK294339 AL833179 BC047328 BX161510 AK315900 BX248013 AK056690 NM_001079537 NM_177452 BC030604	-49	-	AF027150 NM_001009182 NM_001009183 NM_003616 BC028095 BC104968 AK313947 AB037701 AB037702 AB037703	-56154	+	TSC_hg19_v1_chr14_-_39572440 AK299862 BC036649 NM_006364 AK303485	-67188	-	TSC_hg19_v1_chr14_+_39644403 NM_002687 AK292579 AK223612 U77718 BC062602 Y09703 Y10351	4808	+	AK304622 TSC_hg19_v1_chr14_+_39649841	10155	+	AK314069 BX648228 NM_054024 BC035981 BC130537 BC130563 AB527370 AM393252 AM393582 HQ258350 AF390175	63597	+	AK310730|TRAPPC6B|122553|trafficking protein particle complex 6B##AK294339|TRAPPC6B|122553|trafficking protein particle complex 6B##AL833179|TRAPPC6B|122553|trafficking protein particle complex 6B##BC047328|TRAPPC6B|122553|trafficking protein particle complex 6B##BX161510|TRAPPC6B|122553|trafficking protein particle complex 6B##AK315900|TRAPPC6B|122553|trafficking protein particle complex 6B##BX248013|TRAPPC6B|122553|trafficking protein particle complex 6B##AK056690|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_001079537|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_177452|TRAPPC6B|122553|trafficking protein particle complex 6B##BC030604|TRAPPC6B|122553|trafficking protein particle complex 6B##AF027150|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009182|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009183|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_003616|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC028095|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC104968|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK313947|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037701|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037702|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037703|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK299862|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##BC036649|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_006364|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK303485|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_002687|PNN|5411|pinin, desmosome associated protein##AK292579|PNN|5411|pinin, desmosome associated protein##AK223612|PNN|5411|pinin, desmosome associated protein##U77718|PNN|5411|pinin, desmosome associated protein##BC062602|PNN|5411|pinin, desmosome associated protein##Y09703|PNN|5411|pinin, desmosome associated protein##AK304622|PNN|5411|pinin, desmosome associated protein##AK314069|MIA2|117153|melanoma inhibitory activity 2##BX648228|MIA2|117153|melanoma inhibitory activity 2##NM_054024|MIA2|117153|melanoma inhibitory activity 2##BC035981|MIA2|117153|melanoma inhibitory activity 2##BC130537|MIA2|117153|melanoma inhibitory activity 2##BC130563|MIA2|117153|melanoma inhibitory activity 2##AM393252|MIA2|117153|melanoma inhibitory activity 2##AM393582|MIA2|117153|melanoma inhibitory activity 2##HQ258350|MIA2|117153|melanoma inhibitory activity 2##AF390175|MIA2|117153|melanoma inhibitory activity 2	0.0	0.0	
chr6	44186762	44186920	reg1002076.p1	9.052	+	NM_007058 AK314054 BC033733	-60280	+	TSC_hg19_v1_chr6_+_44095393 AK093629 AX748232 NM_018426 AK309791	-91435	+	TSC_hg19_v1_chr6_-_44095190 NM_032111	-91643	-	NM_001078174 NM_004955 TSC_hg19_v1_chr6_+_44187322 BC095398 AK090491 AK304285 AX746476 AB490708 AX775997 U81375 AF079117	515	+	TSC_hg19_v1_chr6_+_44191331 NM_001078175 NM_001078176 BC001382 AK293558 BC008954 NM_001078177	4502	+	TSC_hg19_v1_chr6_+_44191517 AK090615 AB490709	4737	+	NM_007058|CAPN11|11131|calpain 11##AK314054|CAPN11|11131|calpain 11##BC033733|CAPN11|11131|calpain 11##AK093629|TMEM63B|55362|transmembrane protein 63B##NM_018426|TMEM63B|55362|transmembrane protein 63B##AK309791|TMEM63B|55362|transmembrane protein 63B##NM_032111|MRPL14|64928|mitochondrial ribosomal protein L14##NM_001078174|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_004955|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC095398|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK090491|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK304285|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AB490708|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AX775997|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##U81375|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AF079117|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078175|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078176|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC001382|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK293558|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC008954|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078177|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK090615|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AB490709|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1	0.999778	0.0	denovo_WM_7:-37:0.295	denovo_WM_7:-38:0.295	denovo_WM_7:-39:0.295
chr3	48264200	48264343	reg1002712.p1	9.051	+	BC007401 BC018642 NM_001789 NM_201567 TSC_hg19_v1_chr3_-_48229900 M81933	-34412	-	AF277722 AY137580 EU812118 CU675643 AB590275 DQ890753 DQ892919 DQ896168 AK290554 TSC_hg19_v1_chr3_-_48229511	-34843	-	TSC_hg19_v1_chr3_-_48130743 AK054577 NM_001134364 NM_002375 NM_030885	-133571	-	NM_004345 BC055089 X89658 U19970 CU691114 AB590666 AY251531 Z38026 AY162210 CR457083 CR541961	647	+	TSC_hg19_v1_chr3_+_48282593 BC028160 BC062690 AK298782 AY258146 NM_016089 AL832831 BC006247 BC048798 BC005859 AF114816 AF114817 AB463372	18339	+	DQ892283 DQ895483 AK308970 AF051941 TSC_hg19_v1_chr3_-_48342858 U90449 BC001808 BC012828 NM_005793 AK222555 AK294809 AK307332 AK297364 AK309090	78580	-	BC007401|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##BC018642|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##NM_001789|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##NM_201567|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##M81933|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AF277722|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AY137580|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##EU812118|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ890753|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ892919|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ896168|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK290554|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK054577|MAP4|4134|microtubule-associated protein 4##NM_001134364|MAP4|4134|microtubule-associated protein 4##NM_002375|MAP4|4134|microtubule-associated protein 4##NM_030885|MAP4|4134|microtubule-associated protein 4##NM_004345|CAMP|820|cathelicidin antimicrobial peptide##BC055089|CAMP|820|cathelicidin antimicrobial peptide##X89658|CAMP|820|cathelicidin antimicrobial peptide##U19970|CAMP|820|cathelicidin antimicrobial peptide##AY251531|CAMP|820|cathelicidin antimicrobial peptide##Z38026|CAMP|820|cathelicidin antimicrobial peptide##AY162210|CAMP|820|cathelicidin antimicrobial peptide##CR457083|CAMP|820|cathelicidin antimicrobial peptide##CR541961|CAMP|820|cathelicidin antimicrobial peptide##BC028160|ZNF589|51385|zinc finger protein 589##BC062690|ZNF589|51385|zinc finger protein 589##AK298782|ZNF589|51385|zinc finger protein 589##AY258146|ZNF589|51385|zinc finger protein 589##NM_016089|ZNF589|51385|zinc finger protein 589##AL832831|ZNF589|51385|zinc finger protein 589##BC006247|ZNF589|51385|zinc finger protein 589##BC048798|ZNF589|51385|zinc finger protein 589##BC005859|ZNF589|51385|zinc finger protein 589##AF114816|ZNF589|51385|zinc finger protein 589##AF114817|ZNF589|51385|zinc finger protein 589##DQ892283|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##DQ895483|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK308970|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AF051941|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##U90449|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##BC001808|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##BC012828|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##NM_005793|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK222555|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK294809|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK297364|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	0.992328	0.0	denovo_WM_7:12:0.621	denovo_WM_7:13:0.241
chr11	33404724	33404893	reg1002907.p1	9.050	+	TSC_hg19_v1_chr11_+_33363104 AK304063	-41664	+	TSC_hg19_v1_chr11_+_33350077 AY425958	-54698	+	TSC_hg19_v1_chr11_+_33279873 AK293009	-124939	+	TSC_hg19_v1_chr11_+_33563772 AK124395 NM_012194	159016	+	NM_001166692	317477	-	AK309894 NM_001127223 NM_001127225 NM_001127226	339464	-	AK304063|HIPK3|10114|homeodomain interacting protein kinase 3##AY425958|HIPK3|10114|homeodomain interacting protein kinase 3##AK293009|HIPK3|10114|homeodomain interacting protein kinase 3##AK124395|C11orf41|25758|chromosome 11 open reading frame 41##NM_012194|C11orf41|25758|chromosome 11 open reading frame 41##NM_001166692|C11orf91|100131378|chromosome 11 open reading frame 91##AK309894|CD59|966|CD59 molecule, complement regulatory protein##NM_001127223|CD59|966|CD59 molecule, complement regulatory protein##NM_001127225|CD59|966|CD59 molecule, complement regulatory protein##NM_001127226|CD59|966|CD59 molecule, complement regulatory protein	0.994094	0.0	denovo_WM_7:17:0.442	denovo_WM_7:18:0.378
chr4	26748417	26748589	reg1002777.p2	9.050	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-162823	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-256518	-	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-425821	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	114037	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3973496	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3973691	+	NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7	0.020396	0.0	
chr1	205270016	205270162	reg1002392.p1	9.049	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-33455	+	AK293734 NM_001242925	-72031	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-73006	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	20754	-	BC036076 TSC_hg19_v1_chr1_-_205313311	43221	-	AK299227 AK001610 NM_018203 AK096590	55951	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.994368	0.0	
chr7	72627093	72627224	reg1002469.p1	9.049	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	-58127	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-201916	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-230284	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	95666	-	AK057366 AY081948 AY081949 NM_178125	114926	-	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	115134	+	BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa	0.995856	0.0	
chr13	95886582	95886744	reg1003213.p1	9.048	+	X65666 X71136 AB464716 NM_007084	-522345	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-632561	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-638167	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	67049	-	NM_001160100 NM_182848 AK055855	199191	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	318311	+	X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10	1.395541	0.0	denovo_WM_7:-23:0.779	denovo_WM_7:58:0.444
chr16	23347568	23347737	reg1002264.p2	9.046	+	NM_000336 BC036352 X87159 AK313192	-34025	+	U48936 BC059391 NM_001039 TSC_hg19_v1_chr16_+_23194066	-153600	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	-187103	-	TSC_hg19_v1_chr16_-_23464487 BC000549 BC037563 NM_153603	116843	-	TSC_hg19_v1_chr16_-_23521748 AB384559 CU674130 DQ892534 DQ895745 BC050620 AF165531	174083	-	AF190863 AF323754 AF233522 TSC_hg19_v1_chr16_-_23521769	174110	-	NM_000336|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC036352|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##X87159|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##AK313192|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##U48936|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##BC059391|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##NM_001039|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31##BC000549|COG7|91949|component of oligomeric golgi complex 7##BC037563|COG7|91949|component of oligomeric golgi complex 7##NM_153603|COG7|91949|component of oligomeric golgi complex 7##DQ892534|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##DQ895745|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##BC050620|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF165531|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF190863|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF323754|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF233522|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2	0.99503	0.0	
chr18	61575081	61575246	reg1002801.p1	9.045	+	AK313159 BC012609 NM_001143818 NM_002575 Y00630 J02685 J03603 M18082	-20200	+	NM_003784 AF027866 AK300828 BC069417 BC069442 BC069547 AK290876 BC106743 BC106744	-132484	+	NM_001040147 D88575	-154872	+	TSC_hg19_v1_chr18_+_61575223 AK314936	51	+	BC096217 BC096218 BC096219 BC096220 NM_005024 U35459	7581	+	NM_001123366	41424	+	AK313159|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##BC012609|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##NM_001143818|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##NM_002575|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##Y00630|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##J02685|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##J03603|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##M18082|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##NM_003784|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##AF027866|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##AK300828|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##BC069417|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##BC069442|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##BC069547|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##AK290876|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##BC106743|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##BC106744|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##NM_001040147|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##D88575|SERPINB7|8710|serpin peptidase inhibitor, clade B (ovalbumin), member 7##AK314936|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096217|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096218|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096219|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096220|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_005024|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##U35459|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_001123366|HMSD|284293|histocompatibility (minor) serpin domain containing	0.999807	0.0	denovo_WM_7:11:0.457	denovo_WM_7:12:0.457
chr6	2937215	2937368	reg1002824.p2	9.045	+	TSC_hg19_v1_chr6_-_2903544 BC002538 AB060690 L40378 AK314842 NM_004155	-33783	-	TSC_hg19_v1_chr6_-_2842202 AK304641 AK309765	-95094	-	TSC_hg19_v1_chr6_-_2842095 BC009015 NM_030666 M93056 AK298044 AK312973 AK223370 AK291327	-95209	-	AK098566 TSC_hg19_v1_chr6_-_2971511	34123	-	Z22658 TSC_hg19_v1_chr6_-_2971802 BC098564	34520	-	TSC_hg19_v1_chr6_-_2971981 AK314578	34758	-	BC002538|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AB060690|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##L40378|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK314842|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##NM_004155|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK304641|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK309765|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC009015|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##NM_030666|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##M93056|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK298044|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK312973|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK223370|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK291327|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK098566|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##Z22658|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##BC098564|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##AK314578|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6	0.988459	0.0	denovo_WM_7:-44:0.438	denovo_WM_7:-45:0.438
chr12	54610941	54611072	reg1003563.p1	9.042	+	BC088352 BC000417 TSC_hg19_v1_chr12_-_54582755 AK091468 AX747003 NM_001243789 NM_001243790 BC105607 AK001789 AK001235 AK222473 AK290274 NM_001243787 NM_001243788 NM_001243791 NM_014311	-28320	-	BC030212 TSC_hg19_v1_chr12_-_54541132	-69925	-	TSC_hg19_v1_chr12_+_54519846 BC009385	-91148	+	BC006821 NM_001127322 TSC_hg19_v1_chr12_-_54653330	42318	-	NM_001127321 TSC_hg19_v1_chr12_-_54653370	42365	-	TSC_hg19_v1_chr12_-_54673880 L07515 S62077	62876	-	BC088352|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC000417|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK091468|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243790|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC105607|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001235|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK222473|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK290274|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243787|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243788|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243791|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_014311|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC009385|LOC400043|400043|uncharacterized LOC400043##BC006821|CBX5|23468|chromobox homolog 5##NM_001127322|CBX5|23468|chromobox homolog 5##NM_001127321|CBX5|23468|chromobox homolog 5##L07515|CBX5|23468|chromobox homolog 5##S62077|CBX5|23468|chromobox homolog 5	0.9476	0.01039	denovo_WM_7:28:0.239	denovo_WM_7:29:0.617
chr1	192574267	192574447	reg1002928.p1	9.041	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	-29449	+	AY643711 NM_001039152	-288236	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-446754	+	NM_002927 NM_144766 AF030107 BC016667	30927	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	203827	+	BT006790 CU692976 AB528990 AF151828 AK225794 BC015521 TSC_hg19_v1_chr1_-_193028470 AK314445 AK316064 AK024751	454080	-	NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT006790|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF151828|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK225794|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC015521|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK314445|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK316064|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK024751|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5	0.11134	0.0	
chr16	46822149	46822289	reg1000235.p2	9.041	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-40057	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-98622	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-98654	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	42869	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	96062	+	NM_001142466 AK094971	96883	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.0	0.0	
chr18	20808667	20808806	reg1002523.p1	9.041	+	BC037218 NM_138375	-72948	+	EF028204 NM_001100619	-93010	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-294921	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	209135	-	AK057292 NM_003831	224050	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	224510	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.999785	0.0	
chr6	28366717	28366830	reg1002743.p2	9.040	+	TSC_hg19_v1_chr6_+_28317723 AK091225 AX746861 NM_001242894 NM_001242895 NM_024493 AK122790 AK313532 BC006118	-49047	+	NM_001243241 NM_001243242 NM_001243244 NM_030899	-62622	-	AL833617 NM_001135216 NM_001243243 BC008490	-62856	-	TSC_hg19_v1_chr6_-_28367519 BC041661 AB007886 NM_001163391	748	-	AK309235 AL833347 AK092117 AX747363 NM_001012455	44480	-	BC133691 BC148315 AY324826 NM_182701	116793	-	AK091225|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242894|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242895|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_024493|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK122790|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK313532|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##BC006118|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001243241|ZNF323|64288|zinc finger protein 323##NM_001243242|ZNF323|64288|zinc finger protein 323##NM_001243244|ZNF323|64288|zinc finger protein 323##NM_030899|ZNF323|64288|zinc finger protein 323##AL833617|ZNF323|64288|zinc finger protein 323##NM_001135216|ZNF323|64288|zinc finger protein 323##NM_001243243|ZNF323|64288|zinc finger protein 323##BC008490|ZNF323|64288|zinc finger protein 323##BC041661|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AB007886|ZSCAN12|9753|zinc finger and SCAN domain containing 12##NM_001163391|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AK309235|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AL833347|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AK092117|ZSCAN23|222696|zinc finger and SCAN domain containing 23##NM_001012455|ZSCAN23|222696|zinc finger and SCAN domain containing 23##BC133691|GPX6|257202|glutathione peroxidase 6 (olfactory)##BC148315|GPX6|257202|glutathione peroxidase 6 (olfactory)##AY324826|GPX6|257202|glutathione peroxidase 6 (olfactory)##NM_182701|GPX6|257202|glutathione peroxidase 6 (olfactory)	0.997639	0.0	denovo_WM_7:-55:0.817
chr17	8063610	8063767	reg1002771.p1	9.039	+	BC028207 TSC_hg19_v1_chr17_-_8059648 AK295410	-3953	-	TSC_hg19_v1_chr17_-_8055723 AB088477 AF022991 AK291061 NM_002616	-7968	-	BC039887 AB049064 AB463716 NM_001165967 NM_032580	-36286	-	AL050223 TSC_hg19_v1_chr17_-_8064059	314	-	TSC_hg19_v1_chr17_-_8066267 BC002737 AK289555 BC019608 BC033870 AK225777 NM_014232	2604	-	CU687070 BC006292 TSC_hg19_v1_chr17_-_8079699 AK127891 AK315666 AK027813 BC119730 BC119731 BC127649 BC127650 AY358525 BC070231 NM_032354 NM_183065	15972	-	BC028207|PER1|5187|period homolog 1 (Drosophila)##AK295410|PER1|5187|period homolog 1 (Drosophila)##AB088477|PER1|5187|period homolog 1 (Drosophila)##AF022991|PER1|5187|period homolog 1 (Drosophila)##AK291061|PER1|5187|period homolog 1 (Drosophila)##NM_002616|PER1|5187|period homolog 1 (Drosophila)##BC039887|HES7|84667|hairy and enhancer of split 7 (Drosophila)##AB049064|HES7|84667|hairy and enhancer of split 7 (Drosophila)##NM_001165967|HES7|84667|hairy and enhancer of split 7 (Drosophila)##NM_032580|HES7|84667|hairy and enhancer of split 7 (Drosophila)##AL050223|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC002737|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK289555|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC019608|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC033870|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK225777|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##NM_014232|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC006292|TMEM107|84314|transmembrane protein 107##AK315666|TMEM107|84314|transmembrane protein 107##AK027813|TMEM107|84314|transmembrane protein 107##BC119730|TMEM107|84314|transmembrane protein 107##BC119731|TMEM107|84314|transmembrane protein 107##BC127649|TMEM107|84314|transmembrane protein 107##BC127650|TMEM107|84314|transmembrane protein 107##AY358525|TMEM107|84314|transmembrane protein 107##BC070231|TMEM107|84314|transmembrane protein 107##NM_032354|TMEM107|84314|transmembrane protein 107##NM_183065|TMEM107|84314|transmembrane protein 107	1.497585	0.0	denovo_WM_7:11:0.378	denovo_WM_7:26:0.234	denovo_WM_7:27:0.331
chr22	40766431	40766559	reg1002096.p1	9.039	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	-23963	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-192496	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-325063	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	94	+	TSC_hg19_v1_chr22_+_40766619 AK295469	124	+	TSC_hg19_v1_chr22_+_40766634 AK297599	137	+	NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3##AK297599|SGSM3|27352|small G protein signaling modulator 3	0.0	0.0	
chr5	77005972	77006081	reg1002419.p2	9.039	+	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-71512	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-71597	-	TSC_hg19_v1_chr5_-_76788333 AK001766 BC001807 NM_018268	-217711	-	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	66106	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	584399	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	584451	-	BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##AK001766|WDR41|55255|WD repeat domain 41##BC001807|WDR41|55255|WD repeat domain 41##NM_018268|WDR41|55255|WD repeat domain 41##BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.466168	0.0	denovo_WM_7:-2:0.314
chr5	157003133	157003313	reg1002617.p1	9.037	+	AF311317 AF326918 TSC_hg19_v1_chr5_-_157002784 Y13786 AK091464 AK308182 AX747000 NM_033274	-418	-	AB462931 TSC_hg19_v1_chr5_-_157002728	-507	-	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	-115953	+	AB527685 TSC_hg19_v1_chr5_-_157079170	75905	-	AB022083 AB022441 AK308329 AK225861 BC033492 NM_007017 NM_178424	76176	-	BC035142 AK055284 TSC_hg19_v1_chr5_-_157098473 AK302162	95242	-	AF311317|ADAM19|8728|ADAM metallopeptidase domain 19##AF326918|ADAM19|8728|ADAM metallopeptidase domain 19##Y13786|ADAM19|8728|ADAM metallopeptidase domain 19##AK091464|ADAM19|8728|ADAM metallopeptidase domain 19##AK308182|ADAM19|8728|ADAM metallopeptidase domain 19##NM_033274|ADAM19|8728|ADAM metallopeptidase domain 19##AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4##AB022083|SOX30|11063|SRY (sex determining region Y)-box 30##AB022441|SOX30|11063|SRY (sex determining region Y)-box 30##AK308329|SOX30|11063|SRY (sex determining region Y)-box 30##BC033492|SOX30|11063|SRY (sex determining region Y)-box 30##NM_007017|SOX30|11063|SRY (sex determining region Y)-box 30##NM_178424|SOX30|11063|SRY (sex determining region Y)-box 30##AK302162|SOX30|11063|SRY (sex determining region Y)-box 30	1.97905	0.0	denovo_WM_7:32:0.206	denovo_WM_7:54:0.208
chr7	77427629	77427789	reg1002650.p1	9.036	+	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	-41	-	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	-101952	+	TSC_hg19_v1_chr7_-_77325573 BC037783	-102148	-	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	38	-	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	432	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	501	+	BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2	0.0	0.0	
chr11	102292192	102292312	reg1002764.p2	9.035	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-74224	+	TSC_hg19_v1_chr11_+_102217944 AK303197	-74323	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	-104050	+	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	31361	-	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	109207	-	AB527354 NM_004771 Y12779	203803	-	BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20	0.097249	0.0	
chr6	16201425	16201574	reg1002759.p2	9.034	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-58189	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-72062	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	-72197	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	37352	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	560198	-	NM_001190766	900989	+	AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236	1.041915	0.0	
chr15	57392578	57392713	reg1002569.p1	9.032	+	TSC_hg19_v1_chr15_+_57210977 M83233	-181645	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-181743	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	-181777	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	119022	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	276072	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	491520	+	M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12##AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1	0.993257	0.0	
chr19	35651775	35651918	reg1002361.p1	9.032	+	BC009642 TSC_hg19_v1_chr19_+_35646116	-5763	+	TSC_hg19_v1_chr19_+_35645641 AB072911 BC013834 NM_144779 AY358991 BC018798 AF161462 NM_001164605	-6104	+	TSC_hg19_v1_chr19_+_35645637 NM_014164 AK304012	-6220	+	BC039080 HQ258231 AK098526 NM_152481 BC117457 BC117459	67758	-	TSC_hg19_v1_chr19_+_35739294 AK126834	87445	+	TSC_hg19_v1_chr19_+_35739638 NM_015925 NM_205834 NM_205835 BC047376	87768	+	BC009642|FXYD5|53827|FXYD domain containing ion transport regulator 5##AB072911|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC013834|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_144779|FXYD5|53827|FXYD domain containing ion transport regulator 5##AY358991|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC018798|FXYD5|53827|FXYD domain containing ion transport regulator 5##AF161462|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_001164605|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_014164|FXYD5|53827|FXYD domain containing ion transport regulator 5##AK304012|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC039080|FAM187B|148109|family with sequence similarity 187, member B##HQ258231|FAM187B|148109|family with sequence similarity 187, member B##AK098526|FAM187B|148109|family with sequence similarity 187, member B##NM_152481|FAM187B|148109|family with sequence similarity 187, member B##BC117457|FAM187B|148109|family with sequence similarity 187, member B##BC117459|FAM187B|148109|family with sequence similarity 187, member B##AK126834|LSR|51599|lipolysis stimulated lipoprotein receptor##NM_015925|LSR|51599|lipolysis stimulated lipoprotein receptor##NM_205834|LSR|51599|lipolysis stimulated lipoprotein receptor##NM_205835|LSR|51599|lipolysis stimulated lipoprotein receptor##BC047376|LSR|51599|lipolysis stimulated lipoprotein receptor	0.0	0.0	
chr7	120482461	120482595	reg1002689.p2	9.031	+	AK307139 AB028967 NM_012281	-568824	+	NM_019644 AK302407	-2617794	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-2658357	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	15492	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	15632	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	108353	+	AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3	0.999734	0.0	denovo_WM_7:-14:0.230	denovo_WM_7:-15:0.230	denovo_WM_7:-16:0.230	denovo_WM_7:-17:0.230
chr17	29646467	29646647	reg1001709.p2	9.030	+	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	-5446	-	TSC_hg19_v1_chr17_-_29641092 BC005926	-5468	-	AK312822 TSC_hg19_v1_chr17_-_29641073	-5486	-	TSC_hg19_v1_chr17_-_29648631 BC035572 AK295311 AK312348 NM_001003927 NM_014210	2141	-	AY169244 NM_032932 TSC_hg19_v1_chr17_+_29718692	72110	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	72307	+	AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC035572|EVI2A|2123|ecotropic viral integration site 2A##AK295311|EVI2A|2123|ecotropic viral integration site 2A##AK312348|EVI2A|2123|ecotropic viral integration site 2A##NM_001003927|EVI2A|2123|ecotropic viral integration site 2A##NM_014210|EVI2A|2123|ecotropic viral integration site 2A##AY169244|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##NM_032932|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)	0.928057	0.0	denovo_WM_7:33:0.257	denovo_WM_7:35:0.671
chr20	4970269	4970401	reg1002945.p1	9.030	+	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-166141	-	AY154472 NM_170774	-174567	-	AK313404 TSC_hg19_v1_chr20_+_4702555 BC043644 NM_012409 AF187843 AY358985	-267801	+	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	11825	-	BC013112 AF164142 NM_203327	20590	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	123280	-	CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154472|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_170774|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK313404|PRND|23627|prion protein 2 (dublet)##BC043644|PRND|23627|prion protein 2 (dublet)##NM_012409|PRND|23627|prion protein 2 (dublet)##AF187843|PRND|23627|prion protein 2 (dublet)##AY358985|PRND|23627|prion protein 2 (dublet)##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30	0.996332	0.0	denovo_WM_7:-9:0.900
chr14	50554107	50554269	reg1003084.p2	9.029	+	AK091232 AX746864 NM_001012706	-79951	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-193782	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-194355	+	AF390030 NM_001014830	5172	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	29082	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	143795	-	AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)	0.986077	0.0	denovo_WM_7:8:0.932
chr2	8573147	8573308	reg1002477.p1	9.027	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1515640	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1555364	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1566524	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	248976	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	404492	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	570594	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.994285	0.0	
chr12	14556655	14556835	reg1001943.p1	9.026	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	-18473	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	-38110	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-423759	-	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	163864	-	NM_024829 TSC_hg19_v1_chr12_-_14720806	164059	-	BC136544 BC136545 M73489 TSC_hg19_v1_chr12_-_14849534 S57551 AK310034 NM_004963	292740	-	AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1##NM_024829|PLBD1|79887|phospholipase B domain containing 1##BC136544|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##BC136545|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##M73489|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##S57551|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##AK310034|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##NM_004963|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)	0.993557	0.0	denovo_WM_7:-19:0.918
chr3	40760309	40760430	reg1002724.p2	9.026	+	TSC_hg19_v1_chr3_+_40566471 BC101619 BC113415 CR749268	-193869	+	TSC_hg19_v1_chr3_+_40566380 AK127181 NM_001098414 NM_198484 AX721066 AK074366	-193967	+	AK131232 AX721156 NM_175888 AK093599 AX748220 TSC_hg19_v1_chr3_+_40547598	-212785	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	480580	+	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	480655	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	1243190	-	BC101619|ZNF621|285268|zinc finger protein 621##BC113415|ZNF621|285268|zinc finger protein 621##CR749268|ZNF621|285268|zinc finger protein 621##AK127181|ZNF621|285268|zinc finger protein 621##NM_001098414|ZNF621|285268|zinc finger protein 621##NM_198484|ZNF621|285268|zinc finger protein 621##AK074366|ZNF621|285268|zinc finger protein 621##AK131232|ZNF620|253639|zinc finger protein 620##NM_175888|ZNF620|253639|zinc finger protein 620##AK093599|ZNF620|253639|zinc finger protein 620##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)	0.0	0.0	
chr6	27144768	27144927	reg1000615.p1	9.026	+	BC093849 BC093851 TSC_hg19_v1_chr6_+_27114884 AK312232 AB528147 BC134366 BC148293 NM_080596	-29964	+	AB590085 EU446970 TSC_hg19_v1_chr6_-_27114635 AJ223352 BC051872 BC064959 BC108737 BC000893 AK292062 NM_080593	-30240	-	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	-37774	+	AK097918 AK314037 NM_005865 AF052514 AK303106 AB590521	70649	+	NM_033482	135163	-	AF352327 AF336874 BC107050 NM_032030	147711	+	BC093849|HIST1H2AH|85235|histone cluster 1, H2ah##BC093851|HIST1H2AH|85235|histone cluster 1, H2ah##AK312232|HIST1H2AH|85235|histone cluster 1, H2ah##BC134366|HIST1H2AH|85235|histone cluster 1, H2ah##BC148293|HIST1H2AH|85235|histone cluster 1, H2ah##NM_080596|HIST1H2AH|85235|histone cluster 1, H2ah##EU446970|HIST1H2BK|85236|histone cluster 1, H2bk##AJ223352|HIST1H2BK|85236|histone cluster 1, H2bk##BC051872|HIST1H2BK|85236|histone cluster 1, H2bk##BC064959|HIST1H2BK|85236|histone cluster 1, H2bk##BC108737|HIST1H2BK|85236|histone cluster 1, H2bk##BC000893|HIST1H2BK|85236|histone cluster 1, H2bk##AK292062|HIST1H2BK|85236|histone cluster 1, H2bk##NM_080593|HIST1H2BK|85236|histone cluster 1, H2bk##BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i##AK097918|PRSS16|10279|protease, serine, 16 (thymus)##AK314037|PRSS16|10279|protease, serine, 16 (thymus)##NM_005865|PRSS16|10279|protease, serine, 16 (thymus)##AF052514|PRSS16|10279|protease, serine, 16 (thymus)##AK303106|PRSS16|10279|protease, serine, 16 (thymus)##NM_033482|POM121L2|94026|POM121 membrane glycoprotein-like 2##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83	2.024383	0.0	denovo_WM_7:-7:0.851	denovo_WM_7:-22:0.963
chr11	9271764	9271912	reg1002050.p1	9.025	+	TSC_hg19_v1_chr11_-_9225783 AK302478	-46017	-	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-158700	-	BC008835 TSC_hg19_v1_chr11_-_9025549 AK024750 AK098694 AK296484 NM_020645	-246275	-	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	15024	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	64221	-	TSC_hg19_v1_chr11_-_9336141 D26067	64300	-	AK302478|DENND5A|23258|DENN/MADD domain containing 5A##BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##BC008835|NRIP3|56675|nuclear receptor interacting protein 3##AK024750|NRIP3|56675|nuclear receptor interacting protein 3##AK098694|NRIP3|56675|nuclear receptor interacting protein 3##AK296484|NRIP3|56675|nuclear receptor interacting protein 3##NM_020645|NRIP3|56675|nuclear receptor interacting protein 3##AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B##D26067|TMEM41B|440026|transmembrane protein 41B	0.333108	0.0	denovo_WM_7:-14:0.202
chr2	120764630	120764763	reg1002424.p2	9.023	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	-247296	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	-327915	+	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	-327962	+	TSC_hg19_v1_chr2_+_120770604 NM_001184937 NM_001184939 NM_020909	5907	+	TSC_hg19_v1_chr2_+_120770652 AK023019 BC054508 AK290895 BC032822 NM_001184938	6037	+	TSC_hg19_v1_chr2_-_120980957 BC016849 AK289880 BC080607 AK024632	216241	-	M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##NM_001184937|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184939|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_020909|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK023019|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC054508|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK290895|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC032822|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184938|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC016849|TMEM185B|79134|transmembrane protein 185B##BC080607|TMEM185B|79134|transmembrane protein 185B##AK024632|TMEM185B|79134|transmembrane protein 185B	0.99004	0.0	denovo_WM_7:20:0.750
chr7	65274762	65274942	reg1002952.p2	9.021	+	TSC_hg19_v1_chr7_-_65235746 BC066990	-39107	-	TSC_hg19_v1_chr7_+_65216060 BC052238 BC073761 BC122874 BC119782	-58769	+	TSC_hg19_v1_chr7_-_65215912 BX647963	-58934	-	TSC_hg19_v1_chr7_+_65338277 BC027734 NM_173517 BX647631 AY423045	63397	+	AK289522 TSC_hg19_v1_chr7_+_65338347	63493	+	TSC_hg19_v1_chr7_+_65338352 AK304077	63524	+	BC066990|LOC441242|441242|uncharacterized LOC441242##BC052238|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC073761|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC122874|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC119782|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC027734|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##NM_173517|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BX647631|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AY423045|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK289522|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK304077|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1	0.999943	0.0	denovo_WM_7:-44:0.457	denovo_WM_7:-45:0.457
chr1	181906071	181906237	reg1002949.p1	9.019	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	-453454	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-848289	+	NM_016545	-848517	+	BC137223 BC137224 AK128654 NM_001009992	124643	-	TSC_hg19_v1_chr1_-_182354649 AK301600	448528	-	TSC_hg19_v1_chr1_-_182357758 BC127883	451609	-	NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase##BC127883|GLUL|2752|glutamate-ammonia ligase	0.999761	0.0	
chr7	156340456	156340636	reg1002091.p2	9.018	+	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	-735656	-	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	-738748	-	TSC_hg19_v1_chr7_+_155437354 AK307515	-903178	+	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	92685	-	NM_030936 TSC_hg19_v1_chr7_+_156433487 AK314067 NM_001184996 AL136874 BC028120 AK307316	92919	+	NM_001184997 AF325690	95149	+	L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AY927450|SHH|6469|sonic hedgehog##AK307515|RBM33|155435|RNA binding motif protein 33##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13##NM_030936|RNF32|140545|ring finger protein 32##AK314067|RNF32|140545|ring finger protein 32##NM_001184996|RNF32|140545|ring finger protein 32##AL136874|RNF32|140545|ring finger protein 32##BC028120|RNF32|140545|ring finger protein 32##AK307316|RNF32|140545|ring finger protein 32##NM_001184997|RNF32|140545|ring finger protein 32##AF325690|RNF32|140545|ring finger protein 32	0.998418	0.0	denovo_WM_7:-15:0.908
chr11	82689488	82689641	reg1002819.p2	9.017	+	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	-76790	+	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	-78047	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	-244666	-	AK312323 TSC_hg19_v1_chr11_-_82782872	93309	-	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	93333	-	BC031316 TSC_hg19_v1_chr11_+_82783118	93554	+	NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AK312323|RAB30|27314|RAB30, member RAS oncogene family##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##BC031316|LOC100506233|100506233|uncharacterized LOC100506233	0.997792	0.0	denovo_WM_7:-23:0.817
chr3	169923319	169923499	reg1003045.p2	9.010	+	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	-23881	-	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	-23964	-	TSC_hg19_v1_chr3_+_169755984 AK311293	-167457	+	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	16808	+	TSC_hg19_v1_chr3_+_169940223 BC022016	16820	+	TSC_hg19_v1_chr3_+_169940250 L33881 AK315342 AB590674 AB451443	16956	+	AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK311293|GPR160|26996|G protein-coupled receptor 160##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota##BC022016|PRKCI|5584|protein kinase C, iota##L33881|PRKCI|5584|protein kinase C, iota##AK315342|PRKCI|5584|protein kinase C, iota##AB451443|PRKCI|5584|protein kinase C, iota	0.998858	0.0	denovo_WM_7:44:0.314	denovo_WM_7:45:0.314	denovo_WM_7:46:0.314
chr2	232582131	232582309	reg1002514.p1	9.009	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	-8888	+	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	-8986	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-124603	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	63705	-	TSC_hg19_v1_chr2_+_232646442 AK307486	64217	+	TSC_hg19_v1_chr2_+_232651154 AK024273 AK222879 BC091493 AK022674 NM_022730	68896	+	BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AK307486|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##AK024273|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##AK222879|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##BC091493|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##AK022674|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)##NM_022730|COPS7B|64708|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)	0.997904	0.0	
chr4	87995143	87995323	reg1000623.p3	9.009	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-26982	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-66912	+	TSC_hg19_v1_chr4_+_87857481 L13743	-137750	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	146429	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	248792	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	317038	-	AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11	0.887326	0.0	denovo_WM_7:63:0.506
chr2	3413452	3413630	reg1002470.p1	9.008	+	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	-30036	+	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	-31985	-	TSC_hg19_v1_chr2_-_2335085 AK307797	-1078457	-	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	109757	-	TSC_hg19_v1_chr2_-_3523345 NM_018269	109810	-	AJ224117 BT019670 CR541820 DQ892597 DQ895824 TSC_hg19_v1_chr2_-_3605880 AF048994 AK096913 AF048995 AK075490	192338	-	AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK307797|MYT1L|23040|myelin transcription factor 1-like##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1##NM_018269|ADI1|55256|acireductone dioxygenase 1##AJ224117|RNASEH1|246243|ribonuclease H1##BT019670|RNASEH1|246243|ribonuclease H1##CR541820|RNASEH1|246243|ribonuclease H1##DQ892597|RNASEH1|246243|ribonuclease H1##DQ895824|RNASEH1|246243|ribonuclease H1##AF048994|RNASEH1|246243|ribonuclease H1##AK096913|RNASEH1|246243|ribonuclease H1##AF048995|RNASEH1|246243|ribonuclease H1##AK075490|RNASEH1|246243|ribonuclease H1	1.979668	0.0	denovo_WM_7:2:0.787	denovo_WM_7:-12:0.813
chr7	2327472	2327634	reg1003106.p1	9.008	+	BC065367 AB025238 AB025239 AB025242 NM_198953 NM_198954 BC022818 BC040144 CU677071	-45020	+	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	-45678	+	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	-45720	-	TSC_hg19_v1_chr7_-_2354018 BC007785	26471	-	TSC_hg19_v1_chr7_-_2354077 CU692368 DQ892508 DQ895722 AK074544 AF121858 AK315670 BC021565 NM_013321	26521	-	TSC_hg19_v1_chr7_+_2394488 NM_001037283 NM_003751 AK302058	66909	+	BC065367|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025238|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025239|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025242|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198953|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198954|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC022818|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC040144|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC007785|SNX8|29886|sorting nexin 8##DQ892508|SNX8|29886|sorting nexin 8##DQ895722|SNX8|29886|sorting nexin 8##AK074544|SNX8|29886|sorting nexin 8##AF121858|SNX8|29886|sorting nexin 8##AK315670|SNX8|29886|sorting nexin 8##BC021565|SNX8|29886|sorting nexin 8##NM_013321|SNX8|29886|sorting nexin 8##NM_001037283|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##NM_003751|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK302058|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B	0.992617	0.0	denovo_WM_7:-15:0.590	denovo_WM_7:-16:0.229
chr14	102275806	102275986	reg1000591.p1	9.007	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-47710	+	BX161470 NM_001362 S79854 TSC_hg19_v1_chr14_+_102027831 AK292310 BC017717	-248133	+	BC150617 NM_001134888	-924713	-	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	287	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	413	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	154932	+	NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BX161470|DIO3|1735|deiodinase, iodothyronine, type III##NM_001362|DIO3|1735|deiodinase, iodothyronine, type III##S79854|DIO3|1735|deiodinase, iodothyronine, type III##BC017717|DIO3|1735|deiodinase, iodothyronine, type III##BC150617|RTL1|388015|retrotransposon-like 1##NM_001134888|RTL1|388015|retrotransposon-like 1##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1	0.999676	0.0	
chr7	6412860	6413040	reg1000666.p1	9.006	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-24440	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-100719	-	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-268352	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	1277	+	TSC_hg19_v1_chr7_-_6474593 AK298910	61640	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	74589	-	AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta	0.997882	0.0	denovo_WM_7:3:0.298	denovo_WM_7:4:0.298	denovo_WM_7:5:0.298
chr10	45745777	45745954	reg1002580.p2	9.005	+	TSC_hg19_v1_chr10_-_45496265 AK311351 HQ258049 BC062568 BC130369 BC130395 AK055129 NM_001039380	-249501	-	NM_006963 AK291508 AK312278 BC053687 BC010642	-249538	+	BC011402 AB025244 TSC_hg19_v1_chr10_-_45474258 AK002191 AK098476 AL136653 AB022718 AK300839 AK312496 NM_007021	-271596	-	AK131555 NM_001004297	65190	-	TSC_hg19_v1_chr10_+_45869638 AB208946 NM_000698 AK225603 BC130332 BC132677 BC143985 BC143986 AK315223	123772	+	TSC_hg19_v1_chr10_+_45869700 BC034464 BC040450 J03600 J03571 AB590536 HQ258335 HM592258 HM592259 HM592260 HM592261	123832	+	AK311351|C10orf25|220979|chromosome 10 open reading frame 25##HQ258049|C10orf25|220979|chromosome 10 open reading frame 25##BC062568|C10orf25|220979|chromosome 10 open reading frame 25##BC130369|C10orf25|220979|chromosome 10 open reading frame 25##BC130395|C10orf25|220979|chromosome 10 open reading frame 25##AK055129|C10orf25|220979|chromosome 10 open reading frame 25##NM_001039380|C10orf25|220979|chromosome 10 open reading frame 25##NM_006963|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK291508|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK312278|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC053687|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC010642|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC011402|C10orf10|11067|chromosome 10 open reading frame 10##AB025244|C10orf10|11067|chromosome 10 open reading frame 10##AK002191|C10orf10|11067|chromosome 10 open reading frame 10##AK098476|C10orf10|11067|chromosome 10 open reading frame 10##AL136653|C10orf10|11067|chromosome 10 open reading frame 10##AB022718|C10orf10|11067|chromosome 10 open reading frame 10##AK300839|C10orf10|11067|chromosome 10 open reading frame 10##AK312496|C10orf10|11067|chromosome 10 open reading frame 10##NM_007021|C10orf10|11067|chromosome 10 open reading frame 10##AK131555|OR13A1|79290|olfactory receptor, family 13, subfamily A, member 1##NM_001004297|OR13A1|79290|olfactory receptor, family 13, subfamily A, member 1##AB208946|ALOX5|240|arachidonate 5-lipoxygenase##NM_000698|ALOX5|240|arachidonate 5-lipoxygenase##AK225603|ALOX5|240|arachidonate 5-lipoxygenase##BC130332|ALOX5|240|arachidonate 5-lipoxygenase##BC132677|ALOX5|240|arachidonate 5-lipoxygenase##BC143985|ALOX5|240|arachidonate 5-lipoxygenase##BC143986|ALOX5|240|arachidonate 5-lipoxygenase##AK315223|ALOX5|240|arachidonate 5-lipoxygenase##BC034464|ALOX5|240|arachidonate 5-lipoxygenase##BC040450|ALOX5|240|arachidonate 5-lipoxygenase##J03600|ALOX5|240|arachidonate 5-lipoxygenase##J03571|ALOX5|240|arachidonate 5-lipoxygenase##HQ258335|ALOX5|240|arachidonate 5-lipoxygenase##HM592258|ALOX5|240|arachidonate 5-lipoxygenase##HM592259|ALOX5|240|arachidonate 5-lipoxygenase##HM592260|ALOX5|240|arachidonate 5-lipoxygenase##HM592261|ALOX5|240|arachidonate 5-lipoxygenase	0.980126	0.0	denovo_WM_7:35:0.486	denovo_WM_7:37:0.426
chr7	66380089	66380210	reg1001832.p2	9.005	+	TSC_hg19_v1_chr7_+_66205719 AJ250042 AK223329 AK290678	-174419	+	TSC_hg19_v1_chr7_+_66205692 BC015330	-174455	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	-174505	+	TSC_hg19_v1_chr7_+_66386215 AK222774 NM_017994 BC012562 AK000961 BC008675	6027	+	TSC_hg19_v1_chr7_+_66386228 BC041764	6082	+	TSC_hg19_v1_chr7_+_66386238 BC010519	6122	+	AJ250042|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK223329|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK290678|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK222774|C7orf42|55069|chromosome 7 open reading frame 42##NM_017994|C7orf42|55069|chromosome 7 open reading frame 42##BC012562|C7orf42|55069|chromosome 7 open reading frame 42##AK000961|C7orf42|55069|chromosome 7 open reading frame 42##BC008675|C7orf42|55069|chromosome 7 open reading frame 42##BC041764|C7orf42|55069|chromosome 7 open reading frame 42##BC010519|C7orf42|55069|chromosome 7 open reading frame 42	1.957765	0.0	
chr8	2464884	2465016	reg1003131.p2	9.002	+	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-471748	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-512042	+	TSC_hg19_v1_chr8_+_1950340 BC169332	-514598	+	AK128880 TSC_hg19_v1_chr8_-_2585966	121032	-	AY017307 TSC_hg19_v1_chr8_-_4852228	2387275	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	2387344	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##BC169332|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	0.999169	0.0	denovo_WM_7:-17:0.775
chr12	111712734	111712859	reg1002772.p1	8.998	+	BC151245 NM_015267 AB006631 AF271236	-240924	+	M22815 X57542 X66141 BX538165 AK312013 BC031006 BC015821 BC031008 TSC_hg19_v1_chr12_-_111358384 NM_000432	-354418	-	AK302207 AK093162 AX747965 NM_152591 BC064580 BC044815	-427993	+	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	94050	-	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	94114	-	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	130953	+	BC151245|CUX2|23316|cut-like homeobox 2##NM_015267|CUX2|23316|cut-like homeobox 2##AB006631|CUX2|23316|cut-like homeobox 2##AF271236|CUX2|23316|cut-like homeobox 2##M22815|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##X57542|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##X66141|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BX538165|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##AK312013|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC031006|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC015821|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC031008|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##NM_000432|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##AK302207|CCDC63|160762|coiled-coil domain containing 63##AK093162|CCDC63|160762|coiled-coil domain containing 63##NM_152591|CCDC63|160762|coiled-coil domain containing 63##BC064580|CCDC63|160762|coiled-coil domain containing 63##BC044815|CCDC63|160762|coiled-coil domain containing 63##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3	1.967417	0.0	denovo_WM_7:-17:0.968	denovo_WM_7:-32:0.986
chr16	46945038	46945162	reg1002979.p1	8.997	+	NM_001142466 AK094971	-25998	+	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	-26819	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	-80012	-	TSC_hg19_v1_chr16_-_47005340 Y13350	60248	-	CU677459 AF011793 AJ001309 TSC_hg19_v1_chr16_-_47007561	62422	-	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	62495	-	NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##Y13350|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AJ001309|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2	0.0	0.0	
chr5	141704590	141704770	reg1001956.p1	8.997	+	TSC_hg19_v1_chr5_-_141704587 AK096464 NM_001127496 NM_030964	-46	-	BC125095 BC125096 TSC_hg19_v1_chr5_-_141704555 AF227516 AF227517	-160	-	TSC_hg19_v1_chr5_+_141488389 AB097010 AB097037 BC004317	-216270	+	S67291 S67292 S67294 AB528663 X65778 X65779 M13361 NM_033137 X51943	289028	-	L01487 BC032697 NM_001144892	296222	-	M60516 NM_000800	360939	-	AK096464|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_001127496|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_030964|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125095|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125096|SPRY4|81848|sprouty homolog 4 (Drosophila)##AF227516|SPRY4|81848|sprouty homolog 4 (Drosophila)##AB097010|NDFIP1|80762|Nedd4 family interacting protein 1##AB097037|NDFIP1|80762|Nedd4 family interacting protein 1##BC004317|NDFIP1|80762|Nedd4 family interacting protein 1##S67291|FGF1|2246|fibroblast growth factor 1 (acidic)##S67292|FGF1|2246|fibroblast growth factor 1 (acidic)##S67294|FGF1|2246|fibroblast growth factor 1 (acidic)##X65778|FGF1|2246|fibroblast growth factor 1 (acidic)##X65779|FGF1|2246|fibroblast growth factor 1 (acidic)##M13361|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_033137|FGF1|2246|fibroblast growth factor 1 (acidic)##X51943|FGF1|2246|fibroblast growth factor 1 (acidic)##L01487|FGF1|2246|fibroblast growth factor 1 (acidic)##BC032697|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144892|FGF1|2246|fibroblast growth factor 1 (acidic)##M60516|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_000800|FGF1|2246|fibroblast growth factor 1 (acidic)	0.0	0.0	
chr7	17166361	17166525	reg1002935.p1	8.996	+	AY359065 BC058284 NM_176813	-244839	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-321772	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-372987	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	171826	+	TSC_hg19_v1_chr7_+_17382906 BC021696	216463	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	813606	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.588677	0.0	denovo_WM_7:-104:0.552
chr12	95076534	95076666	reg1002597.p1	8.995	+	EU831778 EU831856 BC040535 NM_020698	-32336	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	-222868	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	-222958	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	320870	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	320916	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	390698	-	EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1	0.995621	0.0	denovo_WM_7:7:0.455	denovo_WM_7:8:0.455
chr18	3513612	3513732	reg1002856.p1	8.995	+	NM_173211	-59901	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-62041	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-63592	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	80470	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	331658	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	360612	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.586148	0.0	denovo_WM_7:14:0.247	denovo_WM_7:15:0.340
chr11	65133855	65133954	reg1002924.p1	8.994	+	NM_145719	-11623	+	TSC_hg19_v1_chr11_+_65101347 BC014889 AK291944 U94585 AB463002 BT006718 DQ892397 DQ895612	-32553	+	NM_006268 TSC_hg19_v1_chr11_+_65101322 AK313408 AK300061 BX641135	-32620	+	BC036869 BX648573 NM_001077241 NM_182556	16220	-	NM_031904 TSC_hg19_v1_chr11_+_65154083 BC021094	20160	+	TSC_hg19_v1_chr11_+_65154127 AK074850 BC033851 AK056778 BC044658 AK291678 AK304363 BC051695	20207	+	NM_145719|TIGD3|220359|tigger transposable element derived 3##BC014889|DPF2|5977|D4, zinc and double PHD fingers family 2##AK291944|DPF2|5977|D4, zinc and double PHD fingers family 2##U94585|DPF2|5977|D4, zinc and double PHD fingers family 2##BT006718|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ892397|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ895612|DPF2|5977|D4, zinc and double PHD fingers family 2##NM_006268|DPF2|5977|D4, zinc and double PHD fingers family 2##AK313408|DPF2|5977|D4, zinc and double PHD fingers family 2##AK300061|DPF2|5977|D4, zinc and double PHD fingers family 2##BX641135|DPF2|5977|D4, zinc and double PHD fingers family 2##BC036869|SLC25A45|283130|solute carrier family 25, member 45##BX648573|SLC25A45|283130|solute carrier family 25, member 45##NM_001077241|SLC25A45|283130|solute carrier family 25, member 45##NM_182556|SLC25A45|283130|solute carrier family 25, member 45##NM_031904|FRMD8|83786|FERM domain containing 8##AK074850|FRMD8|83786|FERM domain containing 8##BC033851|FRMD8|83786|FERM domain containing 8##AK056778|FRMD8|83786|FERM domain containing 8##BC044658|FRMD8|83786|FERM domain containing 8##AK291678|FRMD8|83786|FERM domain containing 8##AK304363|FRMD8|83786|FERM domain containing 8##BC051695|FRMD8|83786|FERM domain containing 8	0.981505	0.0	denovo_WM_7:-44:0.213	denovo_WM_7:-55:0.670
chr16	68877318	68877461	reg1002665.p1	8.992	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-106078	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-106144	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-106170	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	116	+	AK291400 NM_001199280	262077	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	262751	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	0.0	0.0	
chr6	20837491	20837635	reg1003420.p1	8.990	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-302840	+	CR749285 NM_001243076	-433530	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-435460	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	756809	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	829096	+	BC015850 NM_000948	1460166	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.988545	0.0	denovo_WM_7:-29:0.962
chr9	98267994	98268098	reg1002753.p2	8.989	+	AK312548 AK222871 TSC_hg19_v1_chr9_-_98079974 BC015748 X66893 AK304887 NM_000136 NM_001243744	-188115	-	X66894 NM_001243743	-188526	-	AK298959 TSC_hg19_v1_chr9_+_97766501 AK300486	-501571	+	TSC_hg19_v1_chr9_-_98268874 AB209495 AB233423 AB233424 CU692174	827	-	AB189440 NM_001083607	1434	-	TSC_hg19_v1_chr9_-_98269686 NM_001083606 U43148	1654	-	AK312548|FANCC|2176|Fanconi anemia, complementation group C##AK222871|FANCC|2176|Fanconi anemia, complementation group C##BC015748|FANCC|2176|Fanconi anemia, complementation group C##X66893|FANCC|2176|Fanconi anemia, complementation group C##AK304887|FANCC|2176|Fanconi anemia, complementation group C##NM_000136|FANCC|2176|Fanconi anemia, complementation group C##NM_001243744|FANCC|2176|Fanconi anemia, complementation group C##X66894|FANCC|2176|Fanconi anemia, complementation group C##NM_001243743|FANCC|2176|Fanconi anemia, complementation group C##AK298959|C9orf3|84909|chromosome 9 open reading frame 3##AK300486|C9orf3|84909|chromosome 9 open reading frame 3##AB209495|PTCH1|5727|patched 1##AB233423|PTCH1|5727|patched 1##AB233424|PTCH1|5727|patched 1##AB189440|PTCH1|5727|patched 1##NM_001083607|PTCH1|5727|patched 1##NM_001083606|PTCH1|5727|patched 1##U43148|PTCH1|5727|patched 1	0.135917	0.0	
chr3	5019083	5019245	reg1002858.p1	8.982	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-483968	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-484036	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-484133	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	1952	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	2017	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	2190	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.0	0.0	
chr19	16286823	16286990	reg1002140.p1	8.980	+	AB050868 BC069320 BC069428 BC069524 NM_054113 HQ258101 BC112200 BC113591	-2596	-	TSC_hg19_v1_chr19_+_16254533 AK027792 AK131222 AK300027 AK298682 AK307563 BC016826	-32404	+	TSC_hg19_v1_chr19_-_16250705 AK095221	-36202	-	TSC_hg19_v1_chr19_+_16296220 AK312058 BC000639 AL050157 NM_014077 BC017286 AF151902 AM393549 AM393669	9326	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	21844	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	148735	+	AB050868|CIB3|117286|calcium and integrin binding family member 3##BC069320|CIB3|117286|calcium and integrin binding family member 3##BC069428|CIB3|117286|calcium and integrin binding family member 3##BC069524|CIB3|117286|calcium and integrin binding family member 3##NM_054113|CIB3|117286|calcium and integrin binding family member 3##HQ258101|CIB3|117286|calcium and integrin binding family member 3##BC112200|CIB3|117286|calcium and integrin binding family member 3##BC113591|CIB3|117286|calcium and integrin binding family member 3##AK027792|HSH2D|84941|hematopoietic SH2 domain containing##AK131222|HSH2D|84941|hematopoietic SH2 domain containing##AK300027|HSH2D|84941|hematopoietic SH2 domain containing##AK298682|HSH2D|84941|hematopoietic SH2 domain containing##AK307563|HSH2D|84941|hematopoietic SH2 domain containing##BC016826|HSH2D|84941|hematopoietic SH2 domain containing##AK312058|FAM32A|26017|family with sequence similarity 32, member A##BC000639|FAM32A|26017|family with sequence similarity 32, member A##AL050157|FAM32A|26017|family with sequence similarity 32, member A##NM_014077|FAM32A|26017|family with sequence similarity 32, member A##BC017286|FAM32A|26017|family with sequence similarity 32, member A##AF151902|FAM32A|26017|family with sequence similarity 32, member A##AM393549|FAM32A|26017|family with sequence similarity 32, member A##AM393669|FAM32A|26017|family with sequence similarity 32, member A##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)	0.992582	0.0	
chr1	19988344	19988470	reg1002714.p1	8.979	+	AK309257 NM_001204086	-16148	+	AK313265 NM_001204085	-16542	+	TSC_hg19_v1_chr1_+_19970804 NM_005380 BC012037 D28124	-17620	+	L41147 NM_000871	3372	+	TSC_hg19_v1_chr1_-_20126374 BX640987 NM_181719	138003	-	CR457228 BC051880 BC030960 AK000232 AK222991 NM_019062	153274	-	AK309257|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##NM_001204086|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##AK313265|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##NM_001204085|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##NM_005380|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##BC012037|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##D28124|NBL1|4681|neuroblastoma, suppression of tumorigenicity 1##L41147|HTR6|3362|5-hydroxytryptamine (serotonin) receptor 6##NM_000871|HTR6|3362|5-hydroxytryptamine (serotonin) receptor 6##BX640987|TMCO4|255104|transmembrane and coiled-coil domains 4##NM_181719|TMCO4|255104|transmembrane and coiled-coil domains 4##CR457228|RNF186|54546|ring finger protein 186##BC051880|RNF186|54546|ring finger protein 186##BC030960|RNF186|54546|ring finger protein 186##AK000232|RNF186|54546|ring finger protein 186##AK222991|RNF186|54546|ring finger protein 186##NM_019062|RNF186|54546|ring finger protein 186	0.998249	0.999201	CTCF.p2:11:0.999	denovo_WM_7:-29:0.453	denovo_WM_7:-30:0.219	denovo_WM_7:-31:0.219
chr11	122958547	122958653	reg1002622.p1	8.978	+	TSC_hg19_v1_chr11_-_122932848 NM_006597 NM_153201 AK310467	-25721	-	AB034951 BC016179 BC016660 BC019816 AF352832 TSC_hg19_v1_chr11_-_122932842 AK222628 AK222785 AK096100 AK129885 AK303935	-25776	-	AB231738 NM_001098169	-106244	-	AY326422 AY358340 TSC_hg19_v1_chr11_-_123065957 AK304843	107302	-	AK026068 NM_024769 TSC_hg19_v1_chr11_-_123066023	107405	-	TSC_hg19_v1_chr11_+_123396366 AK127457	437755	+	NM_006597|HSPA8|3312|heat shock 70kDa protein 8##NM_153201|HSPA8|3312|heat shock 70kDa protein 8##AK310467|HSPA8|3312|heat shock 70kDa protein 8##AB034951|HSPA8|3312|heat shock 70kDa protein 8##BC016179|HSPA8|3312|heat shock 70kDa protein 8##BC016660|HSPA8|3312|heat shock 70kDa protein 8##BC019816|HSPA8|3312|heat shock 70kDa protein 8##AF352832|HSPA8|3312|heat shock 70kDa protein 8##AK222628|HSPA8|3312|heat shock 70kDa protein 8##AK222785|HSPA8|3312|heat shock 70kDa protein 8##AK096100|HSPA8|3312|heat shock 70kDa protein 8##AK129885|HSPA8|3312|heat shock 70kDa protein 8##AK303935|HSPA8|3312|heat shock 70kDa protein 8##AB231738|BSX|390259|brain-specific homeobox##NM_001098169|BSX|390259|brain-specific homeobox##AY326422|CLMP|79827|CXADR-like membrane protein##AY358340|CLMP|79827|CXADR-like membrane protein##AK304843|CLMP|79827|CXADR-like membrane protein##AK026068|CLMP|79827|CXADR-like membrane protein##NM_024769|CLMP|79827|CXADR-like membrane protein##AK127457|GRAMD1B|57476|GRAM domain containing 1B	1.035086	0.0	denovo_WM_7:27:0.846
chr19	6203643	6203761	reg1003140.p1	8.978	+	TSC_hg19_v1_chr19_-_6199558 AK056073	-4155	-	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	-67949	+	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	-93090	-	AB463904 TSC_hg19_v1_chr19_-_6279803	76101	-	TSC_hg19_v1_chr19_-_6279967 D14539 NM_005934	76263	-	AF347024 BC112122 BC112124 NM_133492	129898	-	AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##D14539|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##NM_005934|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##AF347024|ACER1|125981|alkaline ceramidase 1##BC112122|ACER1|125981|alkaline ceramidase 1##BC112124|ACER1|125981|alkaline ceramidase 1##NM_133492|ACER1|125981|alkaline ceramidase 1	0.976994	0.0	denovo_WM_7:26:0.595
chr22	43123686	43123815	reg1002649.p2	8.978	+	TSC_hg19_v1_chr22_-_43117270 AK312927	-6473	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	-6895	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	-33843	-	TSC_hg19_v1_chr22_-_43253228 CU012940 CU013228 CU674999 DQ893007 DQ896253 CR456382 BC005122	129461	-	TSC_hg19_v1_chr22_-_43253280 AF111847 AK307967 AK315720 AL159143 AK300531 AK297635	129520	-	TSC_hg19_v1_chr22_-_43253305 NM_001142293 NM_014570	129605	-	AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##CU012940|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CU013228|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ893007|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ896253|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CR456382|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##BC005122|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AF111847|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK307967|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK315720|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AL159143|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK300531|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK297635|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_001142293|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_014570|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3	1.798859	0.0	denovo_WM_7:52:0.507	denovo_WM_7:70:0.718
chr7	137670674	137670842	reg1002460.p2	8.978	+	NM_001243523	-32665	+	TSC_hg19_v1_chr7_-_137620668 BC015585	-50096	-	TSC_hg19_v1_chr7_+_137531690 BC047556	-139026	+	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	16036	-	AK131517 TSC_hg19_v1_chr7_-_137686812	16054	-	TSC_hg19_v1_chr7_-_137686833 NM_001253775 NM_194071	16094	-	NM_001243523|LOC100130880|100130880|uncharacterized LOC100130880##BC015585|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK131517|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_001253775|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_194071|CREB3L2|64764|cAMP responsive element binding protein 3-like 2	0.776619	0.0	denovo_WM_7:1:0.635
chr4	39029066	39029213	reg1002823.p1	8.977	+	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-159748	+	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	-170711	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	-222720	-	BC030803 BC060512 AK026888 NM_024943	4871	-	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	17299	+	AK289785 NM_015990 NM_199039	34712	+	NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)	0.998832	0.0	
chr1	171455192	171455341	reg1003353.p1	8.976	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	-572	+	BC002780 NM_002022 Z11737	-171838	+	AK290113 AK315100 M64082 NM_002021 AK296198	-237605	+	AF253978 AL096857 TSC_hg19_v1_chr1_+_171481269 AF488829	25986	+	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	166534	-	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	255969	-	BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##AK290113|FMO1|2326|flavin containing monooxygenase 1##AK315100|FMO1|2326|flavin containing monooxygenase 1##M64082|FMO1|2326|flavin containing monooxygenase 1##NM_002021|FMO1|2326|flavin containing monooxygenase 1##AK296198|FMO1|2326|flavin containing monooxygenase 1##AF253978|PRRC2C|23215|proline-rich coiled-coil 2C##AL096857|PRRC2C|23215|proline-rich coiled-coil 2C##AF488829|PRRC2C|23215|proline-rich coiled-coil 2C##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4	0.995715	0.0	
chr6	13527066	13527183	reg1002888.p1	8.975	+	TSC_hg19_v1_chr6_-_13487810 AK000337 NM_001242629 NM_018988	-39266	-	TSC_hg19_v1_chr6_-_13487051 BC148295 BC119005 BC124557	-40027	-	AK055131 AF264036 NM_001242628	-40726	-	TSC_hg19_v1_chr6_+_13574830 NM_001193267 NM_001242827 NM_031244 BX538030 AK302467 AK000355 AK294162 AJ420496 NM_012241 BC000126 AF083110	47719	+	BC064478 TSC_hg19_v1_chr6_-_13615415	88279	-	TSC_hg19_v1_chr6_+_13615570 AF172066 NM_016167 BC062683 AK075301 BC023517 CU692792	88476	+	AK000337|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242629|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_018988|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC148295|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC119005|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC124557|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AK055131|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AF264036|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242628|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001193267|SIRT5|23408|sirtuin 5##NM_001242827|SIRT5|23408|sirtuin 5##NM_031244|SIRT5|23408|sirtuin 5##BX538030|SIRT5|23408|sirtuin 5##AK302467|SIRT5|23408|sirtuin 5##AK000355|SIRT5|23408|sirtuin 5##AK294162|SIRT5|23408|sirtuin 5##AJ420496|SIRT5|23408|sirtuin 5##NM_012241|SIRT5|23408|sirtuin 5##BC000126|SIRT5|23408|sirtuin 5##AF083110|SIRT5|23408|sirtuin 5##AF172066|NOL7|51406|nucleolar protein 7, 27kDa##NM_016167|NOL7|51406|nucleolar protein 7, 27kDa##BC062683|NOL7|51406|nucleolar protein 7, 27kDa##AK075301|NOL7|51406|nucleolar protein 7, 27kDa##BC023517|NOL7|51406|nucleolar protein 7, 27kDa	0.998323	0.0	denovo_WM_7:10:0.477	denovo_WM_7:11:0.477
chr1	211851090	211851196	reg1002920.p2	8.972	+	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-2235	-	TSC_hg19_v1_chr1_-_211752056 BC121015 BC121016 NM_021194	-99055	-	AB451467 TSC_hg19_v1_chr1_-_211752048	-99143	-	BC034621 TSC_hg19_v1_chr1_-_212003681	152605	-	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	152987	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	357747	-	BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC121015|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC121016|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##NM_021194|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AB451467|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7	0.992027	0.0	
chr21	36346634	36346775	reg1003288.p1	8.971	+	TSC_hg19_v1_chr21_-_36260987 BC050363 X79549 D43967 D43968 NM_001001890 NM_001122607	-85723	-	L34598 D10570 TSC_hg19_v1_chr21_-_36260304	-86507	-	AF312386 AF312387 AY004251 TSC_hg19_v1_chr21_-_36259416 S60998	-87292	-	AB384992 AF419247 U19601 BC110828 TSC_hg19_v1_chr21_-_36421376 AK226159	74582	-	BC136380 BC136381 BC144053 TSC_hg19_v1_chr21_-_36421490	74774	-	TSC_hg19_v1_chr21_-_36421575 X90979	74863	-	BC050363|RUNX1|861|runt-related transcription factor 1##X79549|RUNX1|861|runt-related transcription factor 1##D43967|RUNX1|861|runt-related transcription factor 1##D43968|RUNX1|861|runt-related transcription factor 1##NM_001001890|RUNX1|861|runt-related transcription factor 1##NM_001122607|RUNX1|861|runt-related transcription factor 1##L34598|RUNX1|861|runt-related transcription factor 1##D10570|RUNX1|861|runt-related transcription factor 1##S60998|RUNX1|861|runt-related transcription factor 1##U19601|RUNX1|861|runt-related transcription factor 1##BC110828|RUNX1|861|runt-related transcription factor 1##AK226159|RUNX1|861|runt-related transcription factor 1##BC136380|RUNX1|861|runt-related transcription factor 1##BC136381|RUNX1|861|runt-related transcription factor 1##BC144053|RUNX1|861|runt-related transcription factor 1##X90979|RUNX1|861|runt-related transcription factor 1	0.998825	0.0	denovo_WM_7:0:0.288	denovo_WM_7:-1:0.577
chr17	1171330	1171472	reg1002539.p1	8.969	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-80813	-	AK302682 AB384846 TSC_hg19_v1_chr17_-_1083048 NM_021962 U01147	-88332	-	TSC_hg19_v1_chr17_-_1029059 AK307827	-142327	-	NM_001164405	2456	+	AB090231 NM_172367 BC142615	11563	+	TSC_hg19_v1_chr17_-_1248347 L13388	76955	-	AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##AK302682|ABR|29|active BCR-related gene##NM_021962|ABR|29|active BCR-related gene##U01147|ABR|29|active BCR-related gene##AK307827|ABR|29|active BCR-related gene##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.815891	0.0	denovo_WM_7:-41:0.792
chr8	42876207	42876372	reg1002911.p2	8.969	+	TSC_hg19_v1_chr8_+_42752142 BC056146	-124143	+	TSC_hg19_v1_chr8_+_42752090 AK309224	-124201	+	TSC_hg19_v1_chr8_+_42752068 BC048304 NM_032410	-124237	+	TSC_hg19_v1_chr8_+_42911465 NM_002027 BC037295 AK292121 L00634 BC084566 L10413 AB590505 BT009854 BC017029	35179	+	TSC_hg19_v1_chr8_+_42948657 NM_032237	72364	+	AK027009 TSC_hg19_v1_chr8_+_42948660	72378	+	BC056146|HOOK3|84376|hook homolog 3 (Drosophila)##AK309224|HOOK3|84376|hook homolog 3 (Drosophila)##BC048304|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032410|HOOK3|84376|hook homolog 3 (Drosophila)##NM_002027|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC037295|FNTA|2339|farnesyltransferase, CAAX box, alpha##AK292121|FNTA|2339|farnesyltransferase, CAAX box, alpha##L00634|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC084566|FNTA|2339|farnesyltransferase, CAAX box, alpha##L10413|FNTA|2339|farnesyltransferase, CAAX box, alpha##BT009854|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC017029|FNTA|2339|farnesyltransferase, CAAX box, alpha##NM_032237|SGK196|84197|protein kinase-like protein SgK196	1.998917	0.0	denovo_WM_7:-19:0.422	denovo_WM_7:-20:0.235	denovo_WM_7:-36:0.566
chr6	68906661	68906763	reg1002799.p1	8.966	+	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	-307684	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	-2489619	-	AY358133 NM_198283 AK310478	-2617007	-	AL833240 TSC_hg19_v1_chr6_-_69345026	438260	-	TSC_hg19_v1_chr6_+_69345227 NM_001704 AB011122 AK289696	438689	+	TSC_hg19_v1_chr6_-_70506472 AB074281	1599765	-	AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##NM_001704|BAI3|577|brain-specific angiogenesis inhibitor 3##AB011122|BAI3|577|brain-specific angiogenesis inhibitor 3##AK289696|BAI3|577|brain-specific angiogenesis inhibitor 3##AB074281|LMBRD1|55788|LMBR1 domain containing 1	0.992635	0.432803	CTCF.p2:16:0.433
chrUn_gl000219	99734	99881	reg1015347.p1	8.966	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr11	65537432	65537606	reg1002966.p2	8.965	+	TSC_hg19_v1_chr11_-_65488270 DQ892277 DQ895477 AF312034 AK024627 AK225131 AK297660 BC023588 AF346606 NM_032193	-49244	-	TSC_hg19_v1_chr11_-_65487976 L08647	-49550	-	BC117167 BC143290 BC143296 BC093032 TSC_hg19_v1_chr11_+_65479722 AK304664 BC064912 U67734 AB463743 HQ258620 BC013211 BC000166 U40989	-57744	+	NM_138368	10302	-	NM_004561 BC059408 TSC_hg19_v1_chr11_+_65554533	17004	+	TSC_hg19_v1_chr11_+_65554569 AK291711 BX648725	17076	+	DQ892277|RNASEH2C|84153|ribonuclease H2, subunit C##DQ895477|RNASEH2C|84153|ribonuclease H2, subunit C##AF312034|RNASEH2C|84153|ribonuclease H2, subunit C##AK024627|RNASEH2C|84153|ribonuclease H2, subunit C##AK225131|RNASEH2C|84153|ribonuclease H2, subunit C##AK297660|RNASEH2C|84153|ribonuclease H2, subunit C##BC023588|RNASEH2C|84153|ribonuclease H2, subunit C##AF346606|RNASEH2C|84153|ribonuclease H2, subunit C##NM_032193|RNASEH2C|84153|ribonuclease H2, subunit C##L08647|RNASEH2C|84153|ribonuclease H2, subunit C##BC117167|KAT5|10524|K(lysine) acetyltransferase 5##BC143290|KAT5|10524|K(lysine) acetyltransferase 5##BC143296|KAT5|10524|K(lysine) acetyltransferase 5##BC093032|KAT5|10524|K(lysine) acetyltransferase 5##AK304664|KAT5|10524|K(lysine) acetyltransferase 5##BC064912|KAT5|10524|K(lysine) acetyltransferase 5##U67734|KAT5|10524|K(lysine) acetyltransferase 5##HQ258620|KAT5|10524|K(lysine) acetyltransferase 5##BC013211|KAT5|10524|K(lysine) acetyltransferase 5##BC000166|KAT5|10524|K(lysine) acetyltransferase 5##U40989|KAT5|10524|K(lysine) acetyltransferase 5##NM_138368|DKFZp761E198|91056|adaptor protein 5##NM_004561|OVOL1|5017|ovo-like 1(Drosophila)##BC059408|OVOL1|5017|ovo-like 1(Drosophila)##AK291711|OVOL1|5017|ovo-like 1(Drosophila)##BX648725|OVOL1|5017|ovo-like 1(Drosophila)	0.982362	0.126765	denovo_WM_7:15:0.317	denovo_WM_7:16:0.340
chr2	149878057	149878237	reg1000684.p2	8.964	+	TSC_hg19_v1_chr2_+_149633176 AB384491	-244968	+	BC017298 TSC_hg19_v1_chr2_+_149632844	-245307	+	TSC_hg19_v1_chr2_+_149632795 NM_004522 BC002721 BC025961 AB011103	-245351	+	BC040176 NM_177964	16833	+	AK124733 NM_001195685	308351	+	NM_194317 TSC_hg19_v1_chr2_+_150187114 AY358623 AK309248	308955	+	BC017298|KIF5C|3800|kinesin family member 5C##NM_004522|KIF5C|3800|kinesin family member 5C##BC002721|KIF5C|3800|kinesin family member 5C##BC025961|KIF5C|3800|kinesin family member 5C##AB011103|KIF5C|3800|kinesin family member 5C##BC040176|LYPD6B|130576|LY6/PLAUR domain containing 6B##NM_177964|LYPD6B|130576|LY6/PLAUR domain containing 6B##AK124733|LYPD6|130574|LY6/PLAUR domain containing 6##NM_001195685|LYPD6|130574|LY6/PLAUR domain containing 6##NM_194317|LYPD6|130574|LY6/PLAUR domain containing 6##AY358623|LYPD6|130574|LY6/PLAUR domain containing 6##AK309248|LYPD6|130574|LY6/PLAUR domain containing 6	1.1457	0.0	
chr1	228325840	228326017	reg1002922.p1	8.963	+	TSC_hg19_v1_chr1_-_228297001 BC052806 BX647745 AK056987 NM_181441 NM_181454 NM_181455 NM_181456 NM_181462 NM_181463 NM_181464 NM_181465	-28939	-	TSC_hg19_v1_chr1_-_228291059 AK123377	-34825	-	EU832643 EU832720 TSC_hg19_v1_chr1_-_228291006 BC062585 BC002843 NM_024319 AY137773	-34946	-	NM_001242839 TSC_hg19_v1_chr1_+_228327928 NM_000858 NM_001159390 NM_001242840	1944	+	TSC_hg19_v1_chr1_+_228327979 AK303845	2045	+	TSC_hg19_v1_chr1_+_228327982 BC006249	2063	+	BC052806|MRPL55|128308|mitochondrial ribosomal protein L55##BX647745|MRPL55|128308|mitochondrial ribosomal protein L55##AK056987|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181441|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181454|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181455|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181456|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181462|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181463|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181464|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181465|MRPL55|128308|mitochondrial ribosomal protein L55##AK123377|C1orf35|79169|chromosome 1 open reading frame 35##EU832643|C1orf35|79169|chromosome 1 open reading frame 35##EU832720|C1orf35|79169|chromosome 1 open reading frame 35##BC062585|C1orf35|79169|chromosome 1 open reading frame 35##BC002843|C1orf35|79169|chromosome 1 open reading frame 35##NM_024319|C1orf35|79169|chromosome 1 open reading frame 35##AY137773|C1orf35|79169|chromosome 1 open reading frame 35##NM_001242839|GUK1|2987|guanylate kinase 1##NM_000858|GUK1|2987|guanylate kinase 1##NM_001159390|GUK1|2987|guanylate kinase 1##NM_001242840|GUK1|2987|guanylate kinase 1##AK303845|GUK1|2987|guanylate kinase 1##BC006249|GUK1|2987|guanylate kinase 1	0.999705	0.0	
chr9	129767827	129767935	reg1001711.p2	8.963	+	AF221098 NM_001190728 AB385313 CU689706	-43346	+	TSC_hg19_v1_chr9_+_129677073 AB002349 NM_001190729 NM_001190730 NM_014636 BC033708 BC019329 AK299149 BC032372	-90777	+	TSC_hg19_v1_chr9_+_129622936 AB082524 NM_001099270	-144937	+	AK075026 TSC_hg19_v1_chr9_-_129870392	102471	-	TSC_hg19_v1_chr9_-_129884914 AK074726 BC012368 AK307175	117027	-	TSC_hg19_v1_chr9_-_129884962 AK312876	117081	-	AF221098|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190728|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AB002349|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190729|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190730|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_014636|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC033708|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC019329|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK299149|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC032372|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AB082524|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001099270|ZBTB34|403341|zinc finger and BTB domain containing 34##AK075026|ANGPTL2|23452|angiopoietin-like 2##AK074726|ANGPTL2|23452|angiopoietin-like 2##BC012368|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2	0.024344	0.0	
chr4	17810214	17810324	reg1002830.p2	8.962	+	BC050697 TSC_hg19_v1_chr4_-_17806917	-3401	-	AK308144 NM_015688	-27135	-	TSC_hg19_v1_chr4_+_17616263 AF318059 AK313928 AF358829 NM_025205 BC011936 AF317680 DQ893391 DQ896713 AF317679 AF317678	-194003	+	TSC_hg19_v1_chr4_-_17812353 AK056116 NM_017741	2004	-	AF331796 NM_022346 TSC_hg19_v1_chr4_+_17812610 AB013299 AK022512 BC068467 AF235023 BC143383 BC101476 CU686641	2342	+	AK096181 TSC_hg19_v1_chr4_-_18023379 CU691482 BC037322 AK299939 NM_001166139 NM_153686	213197	-	BC050697|DCAF16|54876|DDB1 and CUL4 associated factor 16##AK308144|FAM184B|27146|family with sequence similarity 184, member B##NM_015688|FAM184B|27146|family with sequence similarity 184, member B##AF318059|MED28|80306|mediator complex subunit 28##AK313928|MED28|80306|mediator complex subunit 28##AF358829|MED28|80306|mediator complex subunit 28##NM_025205|MED28|80306|mediator complex subunit 28##BC011936|MED28|80306|mediator complex subunit 28##AF317680|MED28|80306|mediator complex subunit 28##DQ893391|MED28|80306|mediator complex subunit 28##DQ896713|MED28|80306|mediator complex subunit 28##AF317679|MED28|80306|mediator complex subunit 28##AF317678|MED28|80306|mediator complex subunit 28##AK056116|DCAF16|54876|DDB1 and CUL4 associated factor 16##NM_017741|DCAF16|54876|DDB1 and CUL4 associated factor 16##AF331796|NCAPG|64151|non-SMC condensin I complex, subunit G##NM_022346|NCAPG|64151|non-SMC condensin I complex, subunit G##AB013299|NCAPG|64151|non-SMC condensin I complex, subunit G##AK022512|NCAPG|64151|non-SMC condensin I complex, subunit G##BC068467|NCAPG|64151|non-SMC condensin I complex, subunit G##AF235023|NCAPG|64151|non-SMC condensin I complex, subunit G##BC143383|NCAPG|64151|non-SMC condensin I complex, subunit G##BC101476|NCAPG|64151|non-SMC condensin I complex, subunit G##AK096181|LCORL|254251|ligand dependent nuclear receptor corepressor-like##BC037322|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AK299939|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_001166139|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_153686|LCORL|254251|ligand dependent nuclear receptor corepressor-like	0.987393	0.753541	CTCF.p2:8:0.754	denovo_WM_7:-27:0.739	denovo_WM_7:-28:0.249
chr8	115310128	115310308	reg1001983.p1	8.961	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-861089	-	AB114605 NM_198124	-920837	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-4323252	-	TSC_hg19_v1_chr8_-_116680208 AK304046	1370002	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	1370947	-	TSC_hg19_v1_chr8_-_116681365 AF183810	1371117	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.995898	0.0	denovo_WM_7:7:0.984
chr10	32043186	32043328	reg1002950.p1	8.959	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-433168	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-435124	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-435300	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	174467	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	174528	-	TSC_hg19_v1_chr10_-_32344938 AB462413	301675	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	1.019264	0.0	
chr4	164584057	164584196	reg1000396.p1	8.958	+	AB463878 AK000675 AK301408 NM_017923	-49411	-	TSC_hg19_v1_chr4_+_164415868 BC011842	-168253	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-168284	+	NM_012403	534736	-	AK289711 NM_001166373	720280	-	TSC_hg19_v1_chr4_+_165878104 AK056221 NM_153027	1293976	+	AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK056221|C4orf39|152756|chromosome 4 open reading frame 39##NM_153027|C4orf39|152756|chromosome 4 open reading frame 39	0.267848	0.0	denovo_WM_7:12:0.242
chr1	36779464	36779567	reg1002980.p2	8.955	+	TSC_hg19_v1_chr1_+_36772696 NM_024676 AK297015 AK056459	-6809	+	TSC_hg19_v1_chr1_+_36771968 NM_001162530	-7538	+	EU446755 TSC_hg19_v1_chr1_+_36748231	-31315	+	AK001509 NM_018166	10239	-	TSC_hg19_v1_chr1_-_36817157 AK023810	37659	-	AL834137 NM_032017 BC008344 TSC_hg19_v1_chr1_-_36851499 BC007835 AY198395	71976	-	NM_024676|SH3D21|79729|SH3 domain containing 21##AK297015|SH3D21|79729|SH3 domain containing 21##AK056459|SH3D21|79729|SH3 domain containing 21##NM_001162530|SH3D21|79729|SH3 domain containing 21##EU446755|THRAP3|9967|thyroid hormone receptor associated protein 3##AK001509|FAM176B|55194|family with sequence similarity 176, member B##NM_018166|FAM176B|55194|family with sequence similarity 176, member B##AL834137|STK40|83931|serine/threonine kinase 40##NM_032017|STK40|83931|serine/threonine kinase 40##BC008344|STK40|83931|serine/threonine kinase 40##BC007835|STK40|83931|serine/threonine kinase 40##AY198395|STK40|83931|serine/threonine kinase 40	1.028627	0.0	
chr15	101548358	101548518	reg1002437.p1	8.955	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-88926	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-88964	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-128367	+	AB071402 TSC_hg19_v1_chr15_-_101791795	243298	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	243697	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	269225	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	1.996248	0.0	denovo_WM_7:-63:0.305	denovo_WM_7:-64:0.244	denovo_WM_7:-81:0.258	denovo_WM_7:-82:0.319
chr5	150163345	150163479	reg1002268.p1	8.953	+	TSC_hg19_v1_chr5_+_150158318 AK027847 BC082259 AF313413 BC009719	-5058	+	AK125286 NM_032947	-5905	+	CU693212 DQ892339 DQ895544 TSC_hg19_v1_chr5_-_150138580 AF195120 AK000299 AK296787 BC026323 AK025873 AK311693 AK307757 NM_001135643 NM_016221	-24807	-	EU742619 NM_001145805	62672	+	BC117248 BC032607 DQ908918 TSC_hg19_v1_chr5_-_150284372	120921	-	AF395541 TSC_hg19_v1_chr5_-_150284395	120986	-	AK027847|C5orf62|85027|chromosome 5 open reading frame 62##AF313413|C5orf62|85027|chromosome 5 open reading frame 62##BC009719|C5orf62|85027|chromosome 5 open reading frame 62##AK125286|C5orf62|85027|chromosome 5 open reading frame 62##NM_032947|C5orf62|85027|chromosome 5 open reading frame 62##DQ892339|DCTN4|51164|dynactin 4 (p62)##DQ895544|DCTN4|51164|dynactin 4 (p62)##AF195120|DCTN4|51164|dynactin 4 (p62)##AK000299|DCTN4|51164|dynactin 4 (p62)##AK296787|DCTN4|51164|dynactin 4 (p62)##BC026323|DCTN4|51164|dynactin 4 (p62)##AK311693|DCTN4|51164|dynactin 4 (p62)##AK307757|DCTN4|51164|dynactin 4 (p62)##NM_001135643|DCTN4|51164|dynactin 4 (p62)##NM_016221|DCTN4|51164|dynactin 4 (p62)##EU742619|IRGM|345611|immunity-related GTPase family, M##NM_001145805|IRGM|345611|immunity-related GTPase family, M##BC117248|ZNF300|91975|zinc finger protein 300##BC032607|ZNF300|91975|zinc finger protein 300##DQ908918|ZNF300|91975|zinc finger protein 300##AF395541|ZNF300|91975|zinc finger protein 300	0.998964	0.0	
chr12	121567166	121567346	reg1002768.p1	8.952	+	TSC_hg19_v1_chr12_-_121476781 HQ258301 AJ225089 AK314419 NM_003733 NM_198213 AK023956 BC117408 BC117410	-90473	-	TSC_hg19_v1_chr12_-_121454291 AK222630 AK299170 AK301566 AK022510 AK225162 NM_022895 AK307971	-112962	-	TSC_hg19_v1_chr12_-_121454230 BC014661	-113012	-	NM_002562 TSC_hg19_v1_chr12_+_121570744 AK294126 AK290405 AK296432 BC011913 BC121157 BC121158 AB209709 BC007679 AK090866 AK225163 AX746656 Y09561 GQ180122 DQ893457 DQ896337 AB590390 CU680114 AY847298 AY847299 AY847300 AY847301 AY847302 AY847303 AY847304 DQ399293	3445	+	U83993 NM_002560	80405	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	80636	+	HQ258301|OASL|8638|2'-5'-oligoadenylate synthetase-like##AJ225089|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK314419|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_003733|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_198213|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK023956|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117408|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117410|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK222630|C12orf43|64897|chromosome 12 open reading frame 43##AK299170|C12orf43|64897|chromosome 12 open reading frame 43##AK301566|C12orf43|64897|chromosome 12 open reading frame 43##AK022510|C12orf43|64897|chromosome 12 open reading frame 43##AK225162|C12orf43|64897|chromosome 12 open reading frame 43##NM_022895|C12orf43|64897|chromosome 12 open reading frame 43##AK307971|C12orf43|64897|chromosome 12 open reading frame 43##BC014661|C12orf43|64897|chromosome 12 open reading frame 43##NM_002562|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK294126|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK290405|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK296432|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC011913|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121157|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121158|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AB209709|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC007679|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK090866|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK225163|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##Y09561|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##GQ180122|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ893457|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ896337|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847298|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847299|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847300|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847301|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847302|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847303|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847304|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ399293|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4	0.878084	0.0	denovo_WM_7:81:0.362	denovo_WM_7:82:0.424
chr16	87964260	87964375	reg1003134.p1	8.950	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	-61242	-	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-164747	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-164802	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	5830	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	20851	+	AK315535 NM_001173542	29159	+	DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein##AK315535|BANP|54971|BTG3 associated nuclear protein##NM_001173542|BANP|54971|BTG3 associated nuclear protein	0.977483	0.037557	denovo_WM_7:32:0.451	denovo_WM_7:33:0.451
chr1	25074915	25075060	reg1001991.p1	8.949	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-2982	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-3054	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-3156	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	181438	-	TSC_hg19_v1_chr1_-_25256761 AK301044	181752	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	181799	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	1.942477	0.0	denovo_WM_7:3:0.484	denovo_WM_7:4:0.477	denovo_WM_7:18:0.423	denovo_WM_7:19:0.547
chr2	44463544	44463663	reg1002433.p2	8.945	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-67493	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-67588	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-240464	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	39032	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	123267	-	DQ023503 DQ023504 DQ023505 NM_006036	124209	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.999674	0.0	
chr6	11655928	11656108	reg1002672.p2	8.944	+	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-117520	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-273478	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-423108	-	NM_001143948 NM_032744	123261	-	NM_002114	356705	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	634575	+	NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.988472	0.999848	CTCF.p2:-28:1.000	denovo_WM_7:52:0.492	denovo_WM_7:53:0.263
chr1	4856649	4856790	reg1002809.p1	8.943	+	AY282806 NM_001042478 NM_018836	-141615	+	TSC_hg19_v1_chr1_+_4714668 AF175409	-141990	+	TSC_hg19_v1_chr1_-_3816823 BC067302 AK125092 AK289493 NM_207356	-1039874	-	NM_001199861	1195638	+	TSC_hg19_v1_chr1_-_6052456 AY118228	1195726	-	TSC_hg19_v1_chr1_-_6052507 AK124074 AK314326 AF537130 BC040520 NM_015102	1195790	-	AY282806|AJAP1|55966|adherens junctions associated protein 1##NM_001042478|AJAP1|55966|adherens junctions associated protein 1##NM_018836|AJAP1|55966|adherens junctions associated protein 1##AF175409|AJAP1|55966|adherens junctions associated protein 1##BC067302|C1orf174|339448|chromosome 1 open reading frame 174##AK125092|C1orf174|339448|chromosome 1 open reading frame 174##AK289493|C1orf174|339448|chromosome 1 open reading frame 174##NM_207356|C1orf174|339448|chromosome 1 open reading frame 174##NM_001199861|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##AY118228|NPHP4|261734|nephronophthisis 4##AK124074|NPHP4|261734|nephronophthisis 4##AK314326|NPHP4|261734|nephronophthisis 4##AF537130|NPHP4|261734|nephronophthisis 4##BC040520|NPHP4|261734|nephronophthisis 4##NM_015102|NPHP4|261734|nephronophthisis 4	0.783502	0.0	denovo_WM_7:53:0.244	denovo_WM_7:54:0.434
chr4	142079540	142079673	reg1003796.p1	8.942	+	TSC_hg19_v1_chr4_-_142054516 AB033040 NM_020724	-25075	-	NM_015130 TSC_hg19_v1_chr4_-_141677529	-402107	-	U28480 BC069556 BC096736 BC098168 BC098258 BC098352 NM_021833	-589686	-	TSC_hg19_v1_chr4_+_142142051 NM_014487 AK315463 BC004421	62449	+	TSC_hg19_v1_chr4_+_142142087 AK294089 AK223609 AK002106 AJ006591	62480	+	AK290619 NM_000585 NM_172175 BC018149 U14407	478160	+	AB033040|RNF150|57484|ring finger protein 150##NM_020724|RNF150|57484|ring finger protein 150##NM_015130|TBC1D9|23158|TBC1 domain family, member 9 (with GRAM domain)##U28480|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC069556|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC096736|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098168|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098258|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098352|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##NM_021833|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##NM_014487|ZNF330|27309|zinc finger protein 330##AK315463|ZNF330|27309|zinc finger protein 330##BC004421|ZNF330|27309|zinc finger protein 330##AK294089|ZNF330|27309|zinc finger protein 330##AK223609|ZNF330|27309|zinc finger protein 330##AK002106|ZNF330|27309|zinc finger protein 330##AJ006591|ZNF330|27309|zinc finger protein 330##AK290619|IL15|3600|interleukin 15##NM_000585|IL15|3600|interleukin 15##NM_172175|IL15|3600|interleukin 15##BC018149|IL15|3600|interleukin 15##U14407|IL15|3600|interleukin 15	0.987349	0.600593	denovo_WM_7:16:0.274	denovo_WM_7:17:0.366	denovo_WM_7:18:0.348	CTCF.p2:-32:0.601
chr1	205093985	205094089	reg1001645.p1	8.941	+	TSC_hg19_v1_chr1_-_205091144 NM_001193272 NM_001193273 NM_005057	-2890	-	AB527310 CU691040 DQ891205 DQ894388 BC075059 BC075060 AK290137 BC037284 AK296978 TSC_hg19_v1_chr1_-_205091104 X85134 BC053856	-2970	-	BC061592 AY359081 NM_203376 AK303432	-40450	-	TSC_hg19_v1_chr1_-_205180683 AB384485 AY208850 EU832787 GQ129280 BC072406 AK298011 BC117411 BC143603 BC053627	86636	-	TSC_hg19_v1_chr1_-_205180700 AY429674 BC060870 NM_015375 NM_199462	86682	-	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	103046	+	NM_001193272|RBBP5|5929|retinoblastoma binding protein 5##NM_001193273|RBBP5|5929|retinoblastoma binding protein 5##NM_005057|RBBP5|5929|retinoblastoma binding protein 5##DQ891205|RBBP5|5929|retinoblastoma binding protein 5##DQ894388|RBBP5|5929|retinoblastoma binding protein 5##BC075059|RBBP5|5929|retinoblastoma binding protein 5##BC075060|RBBP5|5929|retinoblastoma binding protein 5##AK290137|RBBP5|5929|retinoblastoma binding protein 5##BC037284|RBBP5|5929|retinoblastoma binding protein 5##AK296978|RBBP5|5929|retinoblastoma binding protein 5##X85134|RBBP5|5929|retinoblastoma binding protein 5##BC053856|RBBP5|5929|retinoblastoma binding protein 5##BC061592|TMEM81|388730|transmembrane protein 81##AY359081|TMEM81|388730|transmembrane protein 81##NM_203376|TMEM81|388730|transmembrane protein 81##AK303432|TMEM81|388730|transmembrane protein 81##AY208850|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##EU832787|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##GQ129280|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC072406|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AK298011|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC117411|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC143603|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC053627|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AY429674|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC060870|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_015375|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_199462|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2	0.998342	0.0	denovo_WM_7:-8:0.965
chr8	126711095	126711247	reg1002894.p1	8.941	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-268592	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-607074	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-607114	-	TSC_hg19_v1_chr8_-_126963395 BX648371	252242	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	859384	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	859553	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	0.0	0.0	
chr3	151987617	151987797	reg1002202.p5	8.934	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-362	-	TSC_hg19_v1_chr3_+_151986753 BC050535 BC043493	-965	+	NM_021038 NM_207292	-1879	+	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	29486	+	AY358260 NM_001123228	71071	-	NM_002563 Z49205	565028	+	AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##BC050535|MBNL1|4154|muscleblind-like (Drosophila)##BC043493|MBNL1|4154|muscleblind-like (Drosophila)##NM_021038|MBNL1|4154|muscleblind-like (Drosophila)##NM_207292|MBNL1|4154|muscleblind-like (Drosophila)##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1	0.99951	0.0	denovo_WM_7:6:0.425	denovo_WM_7:7:0.425
chr19	8068558	8068726	reg1003640.p1	8.928	+	TSC_hg19_v1_chr19_-_8008615 AK289634 NM_006351	-59986	-	AF026030 BC000679 AB590328 CU689670 BC033628 TSC_hg19_v1_chr19_-_8008548 DQ891301 DQ894486 AK223062 AK309415 AF041254	-60090	-	TSC_hg19_v1_chr19_-_7991004 BC062702 AK098834 NM_206833	-77626	-	TSC_hg19_v1_chr19_-_8070526 U38175 BC003376 NM_001419	1883	-	AK292662 NM_001201359 NM_005624	49003	+	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	49305	+	AK289634|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##NM_006351|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF026030|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC033628|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ891301|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ894486|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK223062|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK309415|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF041254|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC062702|CTXN1|404217|cortexin 1##AK098834|CTXN1|404217|cortexin 1##NM_206833|CTXN1|404217|cortexin 1##U38175|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##BC003376|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##NM_001419|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25	0.989576	0.0	denovo_WM_7:-55:0.236	denovo_WM_7:-56:0.236	denovo_WM_7:-57:0.236	denovo_WM_7:-58:0.236
chr19	6578029	6578142	reg1003490.p2	8.925	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-47059	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-75768	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-96302	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	12947	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	13021	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	13073	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.018449	0.0	
chr6	43290286	43290398	reg1002484.p1	8.923	+	AB463553 AY555741 AY555742 AY555743 AY555744 NM_206922	-13813	-	TSC_hg19_v1_chr6_+_43266009 AK290806 AK309570 AK314822 BC033805 AK290796 BC017963 DQ893614 DQ896844 AF210455 AY050498	-24290	+	TSC_hg19_v1_chr6_+_43265994 NM_006672 NM_153320 AF097518	-24345	+	TSC_hg19_v1_chr6_-_43337215 BC098434 AF090114 NM_014345 BC030687	46900	-	TSC_hg19_v1_chr6_+_43395310 AK000002 NM_001198934	104971	+	AY032599 NM_033450	109146	+	AY555741|CRIP3|401262|cysteine-rich protein 3##AY555742|CRIP3|401262|cysteine-rich protein 3##AY555743|CRIP3|401262|cysteine-rich protein 3##AY555744|CRIP3|401262|cysteine-rich protein 3##NM_206922|CRIP3|401262|cysteine-rich protein 3##AK290806|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK309570|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK314822|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC033805|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK290796|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC017963|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ893614|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ896844|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF210455|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AY050498|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##NM_006672|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##NM_153320|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF097518|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC098434|ZNF318|24149|zinc finger protein 318##AF090114|ZNF318|24149|zinc finger protein 318##NM_014345|ZNF318|24149|zinc finger protein 318##BC030687|ZNF318|24149|zinc finger protein 318##AK000002|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_001198934|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##AY032599|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_033450|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	1.992967	0.0	denovo_WM_7:-20:0.250	denovo_WM_7:-21:0.675	denovo_WM_7:-36:0.822
chr17	35967983	35968163	reg1003041.p1	8.922	+	TSC_hg19_v1_chr17_+_35849998 BC001894 AF038844 BC000370 BC004448	-118058	+	TSC_hg19_v1_chr17_+_35849996 AK314894	-118084	+	NM_007026 TSC_hg19_v1_chr17_+_35849956	-118113	+	TSC_hg19_v1_chr17_-_35969418 AB462949 BC117313 BC143452 BC143476 BC143478 BC084536 BC090930 AF169548 AK302821 NM_001163544 NM_001163545 NM_001163546 NM_001163547 NM_007247 NM_080550 NM_198882	1377	-	TSC_hg19_v1_chr17_-_36003446 BC006489 AB208938 CU692030	35368	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	35404	-	BC001894|DUSP14|11072|dual specificity phosphatase 14##AF038844|DUSP14|11072|dual specificity phosphatase 14##BC000370|DUSP14|11072|dual specificity phosphatase 14##BC004448|DUSP14|11072|dual specificity phosphatase 14##AK314894|DUSP14|11072|dual specificity phosphatase 14##NM_007026|DUSP14|11072|dual specificity phosphatase 14##BC117313|SYNRG|11276|synergin, gamma##BC143452|SYNRG|11276|synergin, gamma##BC143476|SYNRG|11276|synergin, gamma##BC143478|SYNRG|11276|synergin, gamma##BC084536|SYNRG|11276|synergin, gamma##BC090930|SYNRG|11276|synergin, gamma##AF169548|SYNRG|11276|synergin, gamma##AK302821|SYNRG|11276|synergin, gamma##NM_001163544|SYNRG|11276|synergin, gamma##NM_001163545|SYNRG|11276|synergin, gamma##NM_001163546|SYNRG|11276|synergin, gamma##NM_001163547|SYNRG|11276|synergin, gamma##NM_007247|SYNRG|11276|synergin, gamma##NM_080550|SYNRG|11276|synergin, gamma##NM_198882|SYNRG|11276|synergin, gamma##BC006489|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AB208938|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	1.959717	0.0	denovo_WM_7:-30:0.820	denovo_WM_7:-61:0.325	denovo_WM_7:-62:0.325	denovo_WM_7:-63:0.327
chr8	9480870	9481017	reg1002852.p2	8.922	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	-67462	+	TSC_hg19_v1_chr8_+_9413423 AK302031	-67520	+	TSC_hg19_v1_chr8_+_9413421 BC098394	-67538	+	TSC_hg19_v1_chr8_+_9911765 AY958429	430826	+	TSC_hg19_v1_chr8_+_9911861 AJ242973 BC054033 NM_001135670 NM_012331 AF086925 AF183420	430936	+	AK293488 AY958430 AY958431 BC047552 NM_001135671 NM_001199729	472120	+	BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AY958429|MSRA|4482|methionine sulfoxide reductase A##AJ242973|MSRA|4482|methionine sulfoxide reductase A##BC054033|MSRA|4482|methionine sulfoxide reductase A##NM_001135670|MSRA|4482|methionine sulfoxide reductase A##NM_012331|MSRA|4482|methionine sulfoxide reductase A##AF086925|MSRA|4482|methionine sulfoxide reductase A##AF183420|MSRA|4482|methionine sulfoxide reductase A##AK293488|MSRA|4482|methionine sulfoxide reductase A##AY958430|MSRA|4482|methionine sulfoxide reductase A##AY958431|MSRA|4482|methionine sulfoxide reductase A##BC047552|MSRA|4482|methionine sulfoxide reductase A##NM_001135671|MSRA|4482|methionine sulfoxide reductase A##NM_001199729|MSRA|4482|methionine sulfoxide reductase A	0.998957	0.0	denovo_WM_7:8:0.314	denovo_WM_7:9:0.314	denovo_WM_7:10:0.314
chr9	128023687	128023831	reg1002693.p1	8.922	+	TSC_hg19_v1_chr9_-_128003635 NM_005347	-20045	-	TSC_hg19_v1_chr9_-_128003623 AK293604 X87949	-20136	-	AF188611 AB527282 AF216292 DQ892173 DQ895368 AJ271729 TSC_hg19_v1_chr9_-_128003594 BC020235	-20279	-	TSC_hg19_v1_chr9_+_128024074 AK294542	318	+	TSC_hg19_v1_chr9_+_128024097 AK296381	339	+	TSC_hg19_v1_chr9_+_128024104 BC110990	345	+	NM_005347|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK293604|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##X87949|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF188611|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF216292|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ892173|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ895368|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AJ271729|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##BC020235|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK294542|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1	0.994647	0.0	denovo_WM_7:-53:0.791
chr4	38063804	38063959	reg1003616.p1	8.921	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-84864	+	AF095288 BC069114 BC069400 NM_006607	-101826	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-171092	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	601945	+	AF289565 TSC_hg19_v1_chr4_-_38666549	602608	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	720718	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.98761	0.845408	denovo_WM_7:12:0.567	denovo_WM_7:13:0.366	CTCF.p2:-58:0.845
chr16	10008646	10008757	reg1002459.p3	8.920	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-823098	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-823161	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-951406	-	BC143273 U09002 NM_001134408	267132	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	267487	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	267976	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	2.997105	0.0	denovo_WM_7:69:0.560	denovo_WM_7:70:0.213	denovo_WM_7:84:0.412	denovo_WM_7:85:0.408	denovo_WM_7:99:0.220	denovo_WM_7:100:0.570
chr19	2187907	2188033	reg1002729.p1	8.920	+	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	-23832	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-36417	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-36428	-	BC021037 TSC_hg19_v1_chr19_+_2222534	34504	+	BC032803 TSC_hg19_v1_chr19_+_2232168	44151	+	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	48319	-	AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1	0.994641	0.0	denovo_WM_7:-39:0.779
chr15	67378166	67378313	reg1002311.p1	8.918	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-19838	+	TSC_hg19_v1_chr15_+_67358179 AK290881	-20064	+	NM_001142861 U59914	-377310	+	NM_001145102 AK316017	39884	+	AK298139 NM_001145103	52119	+	NM_001145104 AK300614 AK301348	80257	+	NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##AK290881|SMAD3|4088|SMAD family member 3##NM_001142861|SMAD6|4091|SMAD family member 6##U59914|SMAD6|4091|SMAD family member 6##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3	0.0	0.0	
chr2	16899754	16899862	reg1002451.p2	8.918	+	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	-52664	-	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-817641	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-817813	+	DQ860102 NM_001099218	799897	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	822079	+	TSC_hg19_v1_chr2_+_17721989 AF039555 U14747 AB001104	822212	+	BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1##AF039555|VSNL1|7447|visinin-like 1##U14747|VSNL1|7447|visinin-like 1##AB001104|VSNL1|7447|visinin-like 1	0.997212	0.0	
chr12	24967637	24967814	reg1001135.p2	8.917	+	BC104436 BC104437 TSC_hg19_v1_chr12_-_24737100 AK057456	-230632	-	TSC_hg19_v1_chr12_-_24715349 AB081588 NM_152989 BC060773	-252360	-	BC014929 TSC_hg19_v1_chr12_-_24103967 AK303970	-863764	-	TSC_hg19_v1_chr12_-_25055230 CR749308 BC033864 NM_001178094	87549	-	TSC_hg19_v1_chr12_-_25055966 AK294879 NM_001178093	88262	-	TSC_hg19_v1_chr12_-_25101988 AK299088	134231	-	BC104436|LINC00477|144360|long intergenic non-protein coding RNA 477##BC104437|LINC00477|144360|long intergenic non-protein coding RNA 477##AK057456|LINC00477|144360|long intergenic non-protein coding RNA 477##AB081588|SOX5|6660|SRY (sex determining region Y)-box 5##NM_152989|SOX5|6660|SRY (sex determining region Y)-box 5##BC060773|SOX5|6660|SRY (sex determining region Y)-box 5##BC014929|SOX5|6660|SRY (sex determining region Y)-box 5##AK303970|SOX5|6660|SRY (sex determining region Y)-box 5##CR749308|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC033864|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178094|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK294879|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178093|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK299088|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic	0.985864	0.0	denovo_WM_7:18:0.246	denovo_WM_7:19:0.246	denovo_WM_7:20:0.246	denovo_WM_7:21:0.246
chr13	45992994	45993174	reg1002494.p2	8.917	+	TSC_hg19_v1_chr13_-_45992486 BC132739 BC136760 BC144401 AK094133 AK095465 AK302967 NM_001010875	-590	-	TSC_hg19_v1_chr13_-_45992456 BC129808	-624	-	AF318337 TSC_hg19_v1_chr13_+_45915726 AK124332	-77471	+	TSC_hg19_v1_chr13_+_46039081 NM_031431 AF349676 AF332595 AK026305 AK225466 AK225952 BX648211 AK294959 AK304248 AK314387 BC038953 CU691622	46013	+	BC131494 AK057244 NM_182542	196781	-	AK093129 AX747942 NM_152719	283361	+	BC132739|SLC25A30|253512|solute carrier family 25, member 30##BC136760|SLC25A30|253512|solute carrier family 25, member 30##BC144401|SLC25A30|253512|solute carrier family 25, member 30##AK094133|SLC25A30|253512|solute carrier family 25, member 30##AK095465|SLC25A30|253512|solute carrier family 25, member 30##AK302967|SLC25A30|253512|solute carrier family 25, member 30##NM_001010875|SLC25A30|253512|solute carrier family 25, member 30##BC129808|SLC25A30|253512|solute carrier family 25, member 30##AF318337|LOC100190939|100190939|uncharacterized LOC100190939##AK124332|LOC100190939|100190939|uncharacterized LOC100190939##NM_031431|COG3|83548|component of oligomeric golgi complex 3##AF349676|COG3|83548|component of oligomeric golgi complex 3##AF332595|COG3|83548|component of oligomeric golgi complex 3##AK026305|COG3|83548|component of oligomeric golgi complex 3##AK225466|COG3|83548|component of oligomeric golgi complex 3##AK225952|COG3|83548|component of oligomeric golgi complex 3##BX648211|COG3|83548|component of oligomeric golgi complex 3##AK294959|COG3|83548|component of oligomeric golgi complex 3##AK304248|COG3|83548|component of oligomeric golgi complex 3##AK314387|COG3|83548|component of oligomeric golgi complex 3##BC038953|COG3|83548|component of oligomeric golgi complex 3##BC131494|FAM194B|220081|family with sequence similarity 194, member B##AK057244|FAM194B|220081|family with sequence similarity 194, member B##NM_182542|FAM194B|220081|family with sequence similarity 194, member B##AK093129|SPERT|220082|spermatid associated##NM_152719|SPERT|220082|spermatid associated	2.948632	0.0	denovo_WM_7:0:0.965	denovo_WM_7:14:0.965	denovo_WM_7:29:0.966
chr1	78580216	78580338	reg1003436.p1	8.917	+	TSC_hg19_v1_chr1_+_78511749 AK225941 AB073737 AB528004 CU690284	-68515	+	BC036075 NM_017655 TSC_hg19_v1_chr1_+_78511713	-68614	+	TSC_hg19_v1_chr1_+_78470622 U40992 AK313205 AB209922 BC034721 NM_007034	-109663	+	NM_000959 NM_001039585 AK292845 AK312816 AY485530 L24470 BC112965 AF004021	376507	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	505854	+	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	535221	+	AK225941|GIPC2|54810|GIPC PDZ domain containing family, member 2##AB073737|GIPC2|54810|GIPC PDZ domain containing family, member 2##BC036075|GIPC2|54810|GIPC PDZ domain containing family, member 2##NM_017655|GIPC2|54810|GIPC PDZ domain containing family, member 2##U40992|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##AK313205|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##AB209922|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##BC034721|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##NM_007034|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##NM_000959|PTGFR|5737|prostaglandin F receptor (FP)##NM_001039585|PTGFR|5737|prostaglandin F receptor (FP)##AK292845|PTGFR|5737|prostaglandin F receptor (FP)##AK312816|PTGFR|5737|prostaglandin F receptor (FP)##AY485530|PTGFR|5737|prostaglandin F receptor (FP)##L24470|PTGFR|5737|prostaglandin F receptor (FP)##BC112965|PTGFR|5737|prostaglandin F receptor (FP)##AF004021|PTGFR|5737|prostaglandin F receptor (FP)##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44	0.930614	1.70205	CTCF.p2:3:0.881	denovo_WM_7:49:0.683	CTCF.p2:-49:0.821	denovo_WM_7:50:0.201
chr11	59333819	59333982	reg1003882.p1	8.916	+	NM_001004711	-51515	+	NM_001004706	-62852	+	BC136893 BC136894 NM_001004705	-89027	+	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	49269	-	TSC_hg19_v1_chr11_-_59383232 BC011581	49310	-	AF185696 M86917 NM_002556	49716	-	NM_001004711|OR4D9|390199|olfactory receptor, family 4, subfamily D, member 9##NM_001004706|OR4D11|219986|olfactory receptor, family 4, subfamily D, member 11##BC136893|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC136894|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##NM_001004705|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##BC011581|OSBP|5007|oxysterol binding protein##AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein	0.976617	0.0	denovo_WM_7:48:0.899
chr5	156536925	156537059	reg1002012.p1	8.916	+	TSC_hg19_v1_chr5_-_156536188 NM_032782	-776	-	AK027334 TSC_hg19_v1_chr5_-_156536052 AF450242 AF450243 AK314406 BC020843 AF251707 BC063431	-889	-	AY069944 CU687712 TSC_hg19_v1_chr5_-_156536016	-981	-	NM_001100816 TSC_hg19_v1_chr5_-_156569881 AK123613 AF031383 BC005250 BC006968 AK308393 NM_004270	32860	-	AY973323 CU692472 AF465821 BC025397 AK057543 BC022035 BC025409 BC025998 NM_130899	56236	-	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	70925	+	NM_032782|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK027334|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450242|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450243|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK314406|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC020843|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF251707|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC063431|HAVCR2|84868|hepatitis A virus cellular receptor 2##AY069944|HAVCR2|84868|hepatitis A virus cellular receptor 2##NM_001100816|MED7|9443|mediator complex subunit 7##AF031383|MED7|9443|mediator complex subunit 7##BC005250|MED7|9443|mediator complex subunit 7##BC006968|MED7|9443|mediator complex subunit 7##AK308393|MED7|9443|mediator complex subunit 7##NM_004270|MED7|9443|mediator complex subunit 7##AY973323|FAM71B|153745|family with sequence similarity 71, member B##AF465821|FAM71B|153745|family with sequence similarity 71, member B##BC025397|FAM71B|153745|family with sequence similarity 71, member B##AK057543|FAM71B|153745|family with sequence similarity 71, member B##BC022035|FAM71B|153745|family with sequence similarity 71, member B##BC025409|FAM71B|153745|family with sequence similarity 71, member B##BC025998|FAM71B|153745|family with sequence similarity 71, member B##NM_130899|FAM71B|153745|family with sequence similarity 71, member B##AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase	0.0	0.0	
chr9	37403091	37403230	reg1003306.p2	8.915	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-282577	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-282652	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-282674	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	19546	+	BC010007 TSC_hg19_v1_chr9_-_37465267	62100	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	62235	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.990761	0.0	denovo_WM_7:-8:0.629
chr19	11404346	11404511	reg1001355.p1	8.912	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-31290	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-54132	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-95966	-	AF133424 NM_012466 BC029908	2405	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	45872	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	52505	-	AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205	0.99891	0.0	
chr5	96296856	96297020	reg1003002.p2	8.909	+	U62769 NM_175920	-2784	+	TSC_hg19_v1_chr5_+_96271783 U62768 AK314226 BC111718 BC113117 BC028692	-25144	+	NM_005575 D50810	-25572	+	BC036467 TSC_hg19_v1_chr5_-_96478440	181504	-	AK307885 TSC_hg19_v1_chr5_-_96478482	181537	-	AK291034 TSC_hg19_v1_chr5_-_96478504 NM_153234 AK098400	181600	-	U62769|LNPEP|4012|leucyl/cystinyl aminopeptidase##NM_175920|LNPEP|4012|leucyl/cystinyl aminopeptidase##U62768|LNPEP|4012|leucyl/cystinyl aminopeptidase##AK314226|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC111718|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC113117|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC028692|LNPEP|4012|leucyl/cystinyl aminopeptidase##NM_005575|LNPEP|4012|leucyl/cystinyl aminopeptidase##D50810|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC036467|LIX1|167410|Lix1 homolog (chicken)##AK307885|LIX1|167410|Lix1 homolog (chicken)##AK291034|LIX1|167410|Lix1 homolog (chicken)##NM_153234|LIX1|167410|Lix1 homolog (chicken)##AK098400|LIX1|167410|Lix1 homolog (chicken)	0.856986	0.0	denovo_WM_7:-44:0.245	denovo_WM_7:-49:0.291
chr18	52903620	52903738	reg1002744.p1	8.906	+	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-276992	-	AK058097 NM_001143829	-278401	-	TSC_hg19_v1_chr18_+_52495674 AF329499 NM_004163 BC027474 U57093	-407941	+	FR748222 NM_001243236	66103	-	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	85323	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	165159	-	AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##AK058097|CCDC68|80323|coiled-coil domain containing 68##NM_001143829|CCDC68|80323|coiled-coil domain containing 68##AF329499|RAB27B|5874|RAB27B, member RAS oncogene family##NM_004163|RAB27B|5874|RAB27B, member RAS oncogene family##BC027474|RAB27B|5874|RAB27B, member RAS oncogene family##U57093|RAB27B|5874|RAB27B, member RAS oncogene family##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4	0.99042	0.0	denovo_WM_7:13:0.814
chr19	18811246	18811410	reg1003481.p1	8.906	+	AY360171 TSC_hg19_v1_chr19_+_18794489 BC028050 AB527764 CU688378 DQ893310 DQ894228 AB014516	-16805	+	TSC_hg19_v1_chr19_+_18794453 AK024089 AY040323 NM_001098482 NM_015321	-16904	+	TSC_hg19_v1_chr19_+_18747837 AK001940 AK222656 AK294074 NM_018316 BC026319	-63494	+	U75488 TSC_hg19_v1_chr19_-_18888853	77462	-	AB086984 BC033676 BC110847 L32137 BC125092 TSC_hg19_v1_chr19_-_18902115 AK074508 AK223216 AK290595 AK296586 AK297798 AK297814 NM_000095	90769	-	TSC_hg19_v1_chr19_+_18942742 NM_002911 BC039817	131417	+	AY360171|CRTC1|23373|CREB regulated transcription coactivator 1##BC028050|CRTC1|23373|CREB regulated transcription coactivator 1##DQ893310|CRTC1|23373|CREB regulated transcription coactivator 1##DQ894228|CRTC1|23373|CREB regulated transcription coactivator 1##AB014516|CRTC1|23373|CREB regulated transcription coactivator 1##AK024089|CRTC1|23373|CREB regulated transcription coactivator 1##AY040323|CRTC1|23373|CREB regulated transcription coactivator 1##NM_001098482|CRTC1|23373|CREB regulated transcription coactivator 1##NM_015321|CRTC1|23373|CREB regulated transcription coactivator 1##AK001940|KLHL26|55295|kelch-like 26 (Drosophila)##AK222656|KLHL26|55295|kelch-like 26 (Drosophila)##AK294074|KLHL26|55295|kelch-like 26 (Drosophila)##NM_018316|KLHL26|55295|kelch-like 26 (Drosophila)##BC026319|KLHL26|55295|kelch-like 26 (Drosophila)##AB086984|COMP|1311|cartilage oligomeric matrix protein##BC033676|COMP|1311|cartilage oligomeric matrix protein##BC110847|COMP|1311|cartilage oligomeric matrix protein##L32137|COMP|1311|cartilage oligomeric matrix protein##BC125092|COMP|1311|cartilage oligomeric matrix protein##AK074508|COMP|1311|cartilage oligomeric matrix protein##AK223216|COMP|1311|cartilage oligomeric matrix protein##AK290595|COMP|1311|cartilage oligomeric matrix protein##AK296586|COMP|1311|cartilage oligomeric matrix protein##AK297798|COMP|1311|cartilage oligomeric matrix protein##AK297814|COMP|1311|cartilage oligomeric matrix protein##NM_000095|COMP|1311|cartilage oligomeric matrix protein##NM_002911|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##BC039817|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)	1.488584	0.0	denovo_WM_7:0:0.537	denovo_WM_7:-15:0.302	denovo_WM_7:-16:0.620
chr17	37363369	37363487	reg1003108.p1	8.905	+	TSC_hg19_v1_chr17_+_37356579 BC000530 S56985 BC013016	-6847	+	TSC_hg19_v1_chr17_+_37356573 AK223082 BC062709 BX537435	-6856	+	BC095445 NM_000981 TSC_hg19_v1_chr17_+_37356569 AB055766 BC066315 AK130962 AK311858 X63527	-6876	+	BC109231 AJ608762 AK131500 NM_198993	18551	-	TSC_hg19_v1_chr17_-_37557855 BC007557 DQ223959 AK312612 AK291844 AK123048 NM_001184906 NM_032875	194472	-	CU687400 BC131783 AF055994 BC006517 Y13467 BC060758 TSC_hg19_v1_chr17_-_37607519 AK299789 AK314185 NM_004774	243993	-	BC000530|RPL19|6143|ribosomal protein L19##S56985|RPL19|6143|ribosomal protein L19##BC013016|RPL19|6143|ribosomal protein L19##AK223082|RPL19|6143|ribosomal protein L19##BC062709|RPL19|6143|ribosomal protein L19##BX537435|RPL19|6143|ribosomal protein L19##BC095445|RPL19|6143|ribosomal protein L19##NM_000981|RPL19|6143|ribosomal protein L19##AB055766|RPL19|6143|ribosomal protein L19##BC066315|RPL19|6143|ribosomal protein L19##AK130962|RPL19|6143|ribosomal protein L19##AK311858|RPL19|6143|ribosomal protein L19##X63527|RPL19|6143|ribosomal protein L19##BC109231|STAC2|342667|SH3 and cysteine rich domain 2##AJ608762|STAC2|342667|SH3 and cysteine rich domain 2##AK131500|STAC2|342667|SH3 and cysteine rich domain 2##NM_198993|STAC2|342667|SH3 and cysteine rich domain 2##BC007557|FBXL20|84961|F-box and leucine-rich repeat protein 20##DQ223959|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK312612|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK291844|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK123048|FBXL20|84961|F-box and leucine-rich repeat protein 20##NM_001184906|FBXL20|84961|F-box and leucine-rich repeat protein 20##NM_032875|FBXL20|84961|F-box and leucine-rich repeat protein 20##BC131783|MED1|5469|mediator complex subunit 1##AF055994|MED1|5469|mediator complex subunit 1##BC006517|MED1|5469|mediator complex subunit 1##Y13467|MED1|5469|mediator complex subunit 1##BC060758|MED1|5469|mediator complex subunit 1##AK299789|MED1|5469|mediator complex subunit 1##AK314185|MED1|5469|mediator complex subunit 1##NM_004774|MED1|5469|mediator complex subunit 1	0.218835	0.843019	CTCF.p2:-29:0.843	denovo_WM_7:33:0.219
chr8	121465079	121465196	reg1002983.p2	8.905	+	TSC_hg19_v1_chr8_+_121457658 AK022122 AK300762 BC013136 NM_022045 EU176294 EU176618	-7461	+	BC021744 NM_014078	-7502	-	TSC_hg19_v1_chr8_-_121457391 AK311924	-7744	-	TSC_hg19_v1_chr8_+_121823539 AK302130	358404	+	TSC_hg19_v1_chr8_-_121823718 AF028828	358624	-	TSC_hg19_v1_chr8_-_121824090 AB590740	358926	-	AK022122|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##AK300762|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC013136|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##NM_022045|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176294|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176618|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##AF028828|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	0.991805	0.370454	CTCF.p2:4:0.370
chr12	102253591	102253733	reg1002582.p1	8.904	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-29076	-	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	-120443	-	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	-162040	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	17456	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	17796	+	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	202088	-	AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##CR457171|CCDC53|51019|coiled-coil domain containing 53	0.0	0.0	
chr19	59032688	59032839	reg1003625.p1	8.903	+	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	-1575	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	-1810	-	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	-9386	-	TSC_hg19_v1_chr19_+_59055826 AK225760 BC004978 NM_005762 BC052986	23069	+	TSC_hg19_v1_chr19_+_59055881 U95040	23125	+	U78773 TSC_hg19_v1_chr19_+_59056118 AK313478 AB385179	23307	+	AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK225760|TRIM28|10155|tripartite motif containing 28##BC004978|TRIM28|10155|tripartite motif containing 28##NM_005762|TRIM28|10155|tripartite motif containing 28##BC052986|TRIM28|10155|tripartite motif containing 28##U95040|TRIM28|10155|tripartite motif containing 28##U78773|TRIM28|10155|tripartite motif containing 28##AK313478|TRIM28|10155|tripartite motif containing 28	1.336207	0.0	denovo_WM_7:-21:0.279	denovo_WM_7:-22:0.279
chr6_mann_hap4	2931130	2931260	reg1002303.p1	8.903	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997015	0.0	denovo_WM_7:27:0.424	denovo_WM_7:28:0.424
chrX	40028813	40028952	reg1002267.p1	8.903	+	AF317391 AF317392 AY316592 TSC_hg19_v1_chrX_-_39956720 NM_001123385 NM_017745	-72190	-	TSC_hg19_v1_chrX_+_38663536 AK001248	-1365342	+	TSC_hg19_v1_chrX_+_38663455 AJ272057	-1365422	+	BC114220 NM_001123383 NM_001123384	7699	-	AK297760 AK075382 TSC_hg19_v1_chrX_+_40440221 AF248966 AY038990 NM_005765 AK296614	411304	+	AF291814 TSC_hg19_v1_chrX_+_40440231 AK293510 BC084541 AK297007 AF109363	411360	+	AF317391|BCOR|54880|BCL6 corepressor##AF317392|BCOR|54880|BCL6 corepressor##AY316592|BCOR|54880|BCL6 corepressor##NM_001123385|BCOR|54880|BCL6 corepressor##NM_017745|BCOR|54880|BCL6 corepressor##AK001248|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AJ272057|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##BC114220|BCOR|54880|BCL6 corepressor##NM_001123383|BCOR|54880|BCL6 corepressor##NM_001123384|BCOR|54880|BCL6 corepressor##AK297760|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK075382|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF248966|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AY038990|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##NM_005765|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK296614|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF291814|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK293510|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##BC084541|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK297007|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF109363|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2	0.985593	0.025887	denovo_WM_7:-13:0.962
chr1	242976923	242977050	reg1003031.p1	8.901	+	AK098092 NM_152666	-288989	-	AK091691 AX747130 AK307857 AK295421 AY461578 NM_001195811 NM_001195812	-364216	-	BC132986 BC132988 AF276659 BC127722 NM_001004343	-814612	-	TSC_hg19_v1_chr1_-_243418369 AK296812 AK299552	441370	-	TSC_hg19_v1_chr1_-_243418566 AK310003 BC050722	441586	-	TSC_hg19_v1_chr1_-_243418675 NM_001042404 NM_001042405 NM_014812	441705	-	AK098092|PLD5|200150|phospholipase D family, member 5##NM_152666|PLD5|200150|phospholipase D family, member 5##AK091691|PLD5|200150|phospholipase D family, member 5##AK307857|PLD5|200150|phospholipase D family, member 5##AK295421|PLD5|200150|phospholipase D family, member 5##AY461578|PLD5|200150|phospholipase D family, member 5##NM_001195811|PLD5|200150|phospholipase D family, member 5##NM_001195812|PLD5|200150|phospholipase D family, member 5##BC132986|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##BC132988|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##AF276659|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##BC127722|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##NM_001004343|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##AK296812|CEP170|9859|centrosomal protein 170kDa##AK299552|CEP170|9859|centrosomal protein 170kDa##AK310003|CEP170|9859|centrosomal protein 170kDa##BC050722|CEP170|9859|centrosomal protein 170kDa##NM_001042404|CEP170|9859|centrosomal protein 170kDa##NM_001042405|CEP170|9859|centrosomal protein 170kDa##NM_014812|CEP170|9859|centrosomal protein 170kDa	0.985673	0.0	denovo_WM_7:-7:0.696	denovo_WM_7:-8:0.244
chr20	25159926	25160027	reg1002844.p1	8.898	+	BC126228 BC136497 AF251033 AF251034 DQ854807 DQ854808 DQ854809 DQ854810 DQ854811 DQ854812 NM_014588 NM_199425	-97215	-	AL832939 BC114612 AK314440 TSC_hg19_v1_chr20_-_25038780 BC044588 BC055008 AK127566 BC039261 NM_001252675 NM_001252677 NM_032501	-121297	-	AK125058 AK296306 NM_001252676	-146652	-	TSC_hg19_v1_chr20_+_25176363 AK308626 NM_001114089 NM_001247 AK303786 CR936750 AK293256 AK128412 AK300028 AF039916 AK300514 CR936765 AL834158 BC025980 AY327581	16394	+	AK302395 AK297954 TSC_hg19_v1_chr20_+_25176475	16504	+	TSC_hg19_v1_chr20_+_25228699 NM_002862 AK309036 AK299697 BC017045 J03544 BC030795 AB209080 U47025 DQ894674 EU176283	68782	+	BC126228|VSX1|30813|visual system homeobox 1##BC136497|VSX1|30813|visual system homeobox 1##AF251033|VSX1|30813|visual system homeobox 1##AF251034|VSX1|30813|visual system homeobox 1##DQ854807|VSX1|30813|visual system homeobox 1##DQ854808|VSX1|30813|visual system homeobox 1##DQ854809|VSX1|30813|visual system homeobox 1##DQ854810|VSX1|30813|visual system homeobox 1##DQ854811|VSX1|30813|visual system homeobox 1##DQ854812|VSX1|30813|visual system homeobox 1##NM_014588|VSX1|30813|visual system homeobox 1##NM_199425|VSX1|30813|visual system homeobox 1##AL832939|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC114612|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK314440|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC044588|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC055008|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK127566|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC039261|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252675|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252677|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_032501|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK125058|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK296306|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252676|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK308626|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001114089|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001247|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK303786|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936750|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK293256|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK128412|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300028|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AF039916|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300514|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936765|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AL834158|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##BC025980|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AY327581|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK302395|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK297954|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_002862|PYGB|5834|phosphorylase, glycogen; brain##AK309036|PYGB|5834|phosphorylase, glycogen; brain##AK299697|PYGB|5834|phosphorylase, glycogen; brain##BC017045|PYGB|5834|phosphorylase, glycogen; brain##J03544|PYGB|5834|phosphorylase, glycogen; brain##BC030795|PYGB|5834|phosphorylase, glycogen; brain##AB209080|PYGB|5834|phosphorylase, glycogen; brain##U47025|PYGB|5834|phosphorylase, glycogen; brain##DQ894674|PYGB|5834|phosphorylase, glycogen; brain##EU176283|PYGB|5834|phosphorylase, glycogen; brain	0.0	0.0	
chr3	30673051	30673203	reg1003169.p1	8.897	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-24724	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-25105	+	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	-1350163	+	AL832766 NM_207359	263025	-	TSC_hg19_v1_chr3_+_31574119 AK311488	901003	+	TSC_hg19_v1_chr3_+_31574468 AK074587	901322	+	D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	1.027631	0.0	
chr6	21597325	21597493	reg1001916.p3	8.895	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-3037	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1062686	+	CR749285 NM_001243076	-1193376	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	69250	+	BC015850 NM_000948	700320	-	X54394 X54393 GQ305133 M58594 NM_001163558	705638	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.0	0.0	
chr5	143118138	143118318	reg1002869.p1	8.894	+	NM_001018074 NM_001018075 NM_001018077	-303152	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-334062	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-334196	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	73530	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	431907	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	431948	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.999836	0.0	denovo_WM_7:34:0.419	denovo_WM_7:35:0.419
chr4	186283885	186284000	reg1002914.p1	8.893	+	NM_031953	-152659	+	TSC_hg19_v1_chr4_-_186125137 AK091993 BC020772 BC030535 NM_020827	-158798	-	NM_001151 TSC_hg19_v1_chr4_+_186064419 J02966 AK291902 BC063643 BC008664 AB209764 BC061589 J03593 DQ891547 DQ894735 AB464231	-219472	+	AB037746 BC152444 NM_018409 AL161975	16219	-	TSC_hg19_v1_chr4_+_186317840 AY296056 NM_181726	33897	+	TSC_hg19_v1_chr4_+_186317892 BC088376	33953	+	NM_031953|SNX25|83891|sorting nexin 25##AK091993|KIAA1430|57587|KIAA1430##BC020772|KIAA1430|57587|KIAA1430##BC030535|KIAA1430|57587|KIAA1430##NM_020827|KIAA1430|57587|KIAA1430##NM_001151|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J02966|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK291902|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC063643|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC008664|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB209764|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC061589|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J03593|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ891547|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ894735|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB037746|LRP2BP|55805|LRP2 binding protein##BC152444|LRP2BP|55805|LRP2 binding protein##NM_018409|LRP2BP|55805|LRP2 binding protein##AL161975|LRP2BP|55805|LRP2 binding protein##AY296056|ANKRD37|353322|ankyrin repeat domain 37##NM_181726|ANKRD37|353322|ankyrin repeat domain 37##BC088376|ANKRD37|353322|ankyrin repeat domain 37	0.999552	0.0	
chr12	94528099	94528224	reg1003659.p1	8.892	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-456978	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-562560	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-563341	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	14343	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	325370	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	325481	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	0.986324	0.238631	CTCF.p2:8:0.239	denovo_WM_7:-25:0.811
chr21	27011340	27011520	reg1003371.p1	8.892	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	-31615	-	TSC_hg19_v1_chr21_+_26934442 AF402776	-76958	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1210362	+	NM_021219 TSC_hg19_v1_chr21_+_27011719	223	+	TSC_hg19_v1_chr21_+_27011769 AK312708 AY077698 AY016009 AX772824 AK294769	407	+	AY358361 BC017779 TSC_hg19_v1_chr21_+_27012056	621	+	BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##AK124194|FLJ42200|400860|FLJ42200 protein##NM_021219|JAM2|58494|junctional adhesion molecule 2##AK312708|JAM2|58494|junctional adhesion molecule 2##AY077698|JAM2|58494|junctional adhesion molecule 2##AY016009|JAM2|58494|junctional adhesion molecule 2##AX772824|JAM2|58494|junctional adhesion molecule 2##AK294769|JAM2|58494|junctional adhesion molecule 2##AY358361|JAM2|58494|junctional adhesion molecule 2##BC017779|JAM2|58494|junctional adhesion molecule 2	0.473661	0.0	
chr6	26172988	26173162	reg1002959.p3	8.892	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-14711	+	NM_005321 TSC_hg19_v1_chr6_+_26156558 BC096168 BC096169 BC096170 BC099632 EF065554 EF065555	-16477	+	TSC_hg19_v1_chr6_+_26156555 BC055095 AK313681	-16521	+	BC101748 BC101750 EU446967 NM_003523	10915	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	16247	-	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	24421	-	NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##NM_005321|HIST1H1E|3008|histone cluster 1, H1e##BC096168|HIST1H1E|3008|histone cluster 1, H1e##BC096169|HIST1H1E|3008|histone cluster 1, H1e##BC096170|HIST1H1E|3008|histone cluster 1, H1e##BC099632|HIST1H1E|3008|histone cluster 1, H1e##EF065554|HIST1H1E|3008|histone cluster 1, H1e##EF065555|HIST1H1E|3008|histone cluster 1, H1e##AK313681|HIST1H1E|3008|histone cluster 1, H1e##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d	0.0	0.0	
chr10	30823532	30823654	reg1002448.p1	8.891	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	-100472	+	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	-100654	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-185360	-	AF139543 BC066294 NM_183058	95042	-	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	464859	-	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	497228	-	AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438	0.985164	0.980809	denovo_WM_7:-31:0.266	CTCF.p2:55:0.981
chr12	123386411	123386591	reg1003028.p2	8.891	+	TSC_hg19_v1_chr12_-_123380691 AK022812 NM_024667	-5805	-	TSC_hg19_v1_chr12_-_123380645 BC005882	-5862	-	CU675175 TSC_hg19_v1_chr12_-_123380621	-5886	-	TSC_hg19_v1_chr12_-_123450999 AK027624 AB177852 AB112582 AB112583	64477	-	AF216494 AK304295 TSC_hg19_v1_chr12_-_123451051 NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444	64546	-	BC009181 BC071172 BC015605 BC047676 AK095481 AK023553 NM_024623 BC033857	72805	+	AK022812|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##NM_024667|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##BC005882|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##AK027624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB177852|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112582|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112583|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AF216494|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK304295|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243013|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243014|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019625|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_203444|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##BC009181|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC071172|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC015605|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC047676|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK095481|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK023553|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##NM_024623|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC033857|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2	1.688071	0.0	denovo_WM_7:0:0.224	denovo_WM_7:0:0.494	denovo_WM_7:15:0.306	denovo_WM_7:16:0.617
chr5	150632126	150632258	reg1003274.p2	8.891	+	TSC_hg19_v1_chr5_-_150603654 AK292841 AK298063 AL713742 NM_015621	-28512	-	TSC_hg19_v1_chr5_-_150603648 AK225826	-28561	-	TSC_hg19_v1_chr5_-_150537341 NM_001155	-94804	-	NM_000405 NM_001167607 TSC_hg19_v1_chr5_+_150632745 AK225978 L01439 M76477 AK312494 X62078 AK298867 BC009273 X61095 CU679281 DQ891914 DQ895098 X16087	523	+	AK127978 NM_001145017 NM_181774	51137	-	BC101100 BC101101 BC101102 BC101103 AK297682 AY162214 AK122630 AK309575 NM_181776	94927	-	AK292841|CCDC69|26112|coiled-coil domain containing 69##AK298063|CCDC69|26112|coiled-coil domain containing 69##AL713742|CCDC69|26112|coiled-coil domain containing 69##NM_015621|CCDC69|26112|coiled-coil domain containing 69##AK225826|CCDC69|26112|coiled-coil domain containing 69##NM_001155|ANXA6|309|annexin A6##NM_000405|GM2A|2760|GM2 ganglioside activator##NM_001167607|GM2A|2760|GM2 ganglioside activator##L01439|GM2A|2760|GM2 ganglioside activator##M76477|GM2A|2760|GM2 ganglioside activator##AK312494|GM2A|2760|GM2 ganglioside activator##X62078|GM2A|2760|GM2 ganglioside activator##AK298867|GM2A|2760|GM2 ganglioside activator##BC009273|GM2A|2760|GM2 ganglioside activator##X61095|GM2A|2760|GM2 ganglioside activator##DQ891914|GM2A|2760|GM2 ganglioside activator##DQ895098|GM2A|2760|GM2 ganglioside activator##X16087|GM2A|2760|GM2 ganglioside activator##AK127978|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_001145017|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_181774|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##BC101100|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101101|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101102|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101103|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK297682|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AY162214|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK309575|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##NM_181776|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2	0.990744	0.0	denovo_WM_7:-34:0.237	denovo_WM_7:-35:0.237	denovo_WM_7:-36:0.237	denovo_WM_7:-37:0.237
chr9	80443000	80443099	reg1003001.p3	8.886	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-179818	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-474701	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-650541	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	203135	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	407981	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	469009	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	1.994638	0.0	denovo_WM_7:-46:0.305	denovo_WM_7:-47:0.244	denovo_WM_7:-64:0.257	denovo_WM_7:-65:0.318
chr10	21582435	21582572	reg1001209.p2	8.885	+	TSC_hg19_v1_chr10_-_21463021 BC126132 BC126134 BC144201 AJ580772 NM_001173484 NM_213569	-119436	-	AB209311 TSC_hg19_v1_chr10_-_21462987	-119516	-	BC140744 BC144447 NM_001010896 NM_001177483	-147016	-	BC130594 BC132974 TSC_hg19_v1_chr10_-_21785960	203429	-	TSC_hg19_v1_chr10_-_21786190 BC040880	203688	-	TSC_hg19_v1_chr10_-_21786207 NM_001010911	203722	-	BC126132|NEBL|10529|nebulette##BC126134|NEBL|10529|nebulette##BC144201|NEBL|10529|nebulette##AJ580772|NEBL|10529|nebulette##NM_001173484|NEBL|10529|nebulette##NM_213569|NEBL|10529|nebulette##AB209311|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113##BC130594|C10orf114|399726|chromosome 10 open reading frame 114##BC132974|C10orf114|399726|chromosome 10 open reading frame 114##BC040880|C10orf114|399726|chromosome 10 open reading frame 114##NM_001010911|C10orf114|399726|chromosome 10 open reading frame 114	2.418097	0.0	denovo_WM_7:-34:0.878	denovo_WM_7:-49:0.502	denovo_WM_7:-50:0.319
chr15	73373840	73373953	reg1003484.p1	8.884	+	NM_001172623 NM_001172624 NM_002499 U61262 U72391 BC117161 BC143270 BC143271 BC143279 AB528479	-28976	+	TSC_hg19_v1_chr15_-_73076118 AK055526 NM_031284	-297773	-	BC044589 TSC_hg19_v1_chr15_-_73076072	-297825	-	TSC_hg19_v1_chr15_-_73661207 AJ132429 DQ854814	287311	-	AJ238850 NM_005477	287708	-	NM_001042367 AK131030 BC055412	361613	+	NM_001172623|NEO1|4756|neogenin 1##NM_001172624|NEO1|4756|neogenin 1##NM_002499|NEO1|4756|neogenin 1##U61262|NEO1|4756|neogenin 1##U72391|NEO1|4756|neogenin 1##BC117161|NEO1|4756|neogenin 1##BC143270|NEO1|4756|neogenin 1##BC143271|NEO1|4756|neogenin 1##BC143279|NEO1|4756|neogenin 1##AK055526|ADPGK|83440|ADP-dependent glucokinase##NM_031284|ADPGK|83440|ADP-dependent glucokinase##BC044589|ADPGK|83440|ADP-dependent glucokinase##AJ132429|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##DQ854814|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##AJ238850|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##NM_005477|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##NM_001042367|C15orf60|283677|chromosome 15 open reading frame 60##AK131030|C15orf60|283677|chromosome 15 open reading frame 60##BC055412|C15orf60|283677|chromosome 15 open reading frame 60	0.992275	0.935103	CTCF.p2:-9:0.935	denovo_WM_7:29:0.338	denovo_WM_7:30:0.325	denovo_WM_7:31:0.259
chr9	135117722	135117829	reg1002418.p1	8.884	+	AB058760 NM_032536 TSC_hg19_v1_chr9_+_135037469	-80372	+	TSC_hg19_v1_chr9_+_135037083 AY358165	-80684	+	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	-162525	-	TSC_hg19_v1_chr9_-_135230312 AK125448	112455	-	TSC_hg19_v1_chr9_-_135230352 AK307608 BX537849	112573	-	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	112632	-	AB058760|NTNG2|84628|netrin G2##NM_032536|NTNG2|84628|netrin G2##AY358165|NTNG2|84628|netrin G2##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AK125448|SETX|23064|senataxin##AK307608|SETX|23064|senataxin##BX537849|SETX|23064|senataxin##BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin	0.994139	0.0	denovo_WM_7:8:0.302	denovo_WM_7:9:0.302	denovo_WM_7:10:0.302
chr1	25358837	25359017	reg1003019.p1	8.882	+	BC013362 AK310945 NM_001031680 AF022726	-67385	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	-102141	-	TSC_hg19_v1_chr1_-_25256761 AK301044	-102188	-	CU679829 DQ890663 EU176475 TSC_hg19_v1_chr1_-_25558994 AF273089 AL080166 BC010862 AK303582 AK314859 BC015824 NM_015484 NM_207170	200060	-	BC065040 TSC_hg19_v1_chr1_-_25573922	214996	-	BC001892 AF267856 AF247168 AK027318 AK292532 AK296798 TSC_hg19_v1_chr1_-_25573946 AK226012 NM_020317	215046	-	BC013362|RUNX3|864|runt-related transcription factor 3##AK310945|RUNX3|864|runt-related transcription factor 3##NM_001031680|RUNX3|864|runt-related transcription factor 3##AF022726|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##DQ890663|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##EU176475|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AF273089|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AL080166|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC010862|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK303582|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK314859|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC015824|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_015484|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_207170|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC065040|C1orf63|57035|chromosome 1 open reading frame 63##BC001892|C1orf63|57035|chromosome 1 open reading frame 63##AF267856|C1orf63|57035|chromosome 1 open reading frame 63##AF247168|C1orf63|57035|chromosome 1 open reading frame 63##AK027318|C1orf63|57035|chromosome 1 open reading frame 63##AK292532|C1orf63|57035|chromosome 1 open reading frame 63##AK296798|C1orf63|57035|chromosome 1 open reading frame 63##AK226012|C1orf63|57035|chromosome 1 open reading frame 63##NM_020317|C1orf63|57035|chromosome 1 open reading frame 63	0.129192	0.0	
chr6	142716948	142717119	reg1002997.p1	8.882	+	TSC_hg19_v1_chr6_+_142623443 BX640873	-93627	+	TSC_hg19_v1_chr6_+_142623145 BC075798 NM_001032394 NM_001032395 NM_020455 NM_198569 AF216967 AB183546 AB183547 AB183548 AB183549 AK307543 AK122617 BX648315	-93964	+	TSC_hg19_v1_chr6_+_142510627 BC013217	-206404	+	TSC_hg19_v1_chr6_-_143266314 CR936782 NM_006734	549295	-	TSC_hg19_v1_chr6_+_143382007 AK298533 AK222475 NM_016108	664962	+	BC009559 TSC_hg19_v1_chr6_+_143382031 AF153605 AK001347 BX640703	665003	+	BX640873|GPR126|57211|G protein-coupled receptor 126##BC075798|GPR126|57211|G protein-coupled receptor 126##NM_001032394|GPR126|57211|G protein-coupled receptor 126##NM_001032395|GPR126|57211|G protein-coupled receptor 126##NM_020455|GPR126|57211|G protein-coupled receptor 126##NM_198569|GPR126|57211|G protein-coupled receptor 126##AF216967|GPR126|57211|G protein-coupled receptor 126##AB183546|GPR126|57211|G protein-coupled receptor 126##AB183547|GPR126|57211|G protein-coupled receptor 126##AB183548|GPR126|57211|G protein-coupled receptor 126##AB183549|GPR126|57211|G protein-coupled receptor 126##AK307543|GPR126|57211|G protein-coupled receptor 126##AK122617|GPR126|57211|G protein-coupled receptor 126##BX648315|GPR126|57211|G protein-coupled receptor 126##BC013217|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##CR936782|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##NM_006734|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##AK298533|AIG1|51390|androgen-induced 1##AK222475|AIG1|51390|androgen-induced 1##NM_016108|AIG1|51390|androgen-induced 1##BC009559|AIG1|51390|androgen-induced 1##AF153605|AIG1|51390|androgen-induced 1##AK001347|AIG1|51390|androgen-induced 1##BX640703|AIG1|51390|androgen-induced 1	0.0	0.0	
chr5	114938194	114938316	reg1002417.p1	8.880	+	BC109265 BC109266 NM_021649	-138	-	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	-57692	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	-57898	-	TSC_hg19_v1_chr5_-_114961697 AK074962	23437	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	23539	-	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	214108	-	BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I	0.999641	0.0	
chr8	41481251	41481357	reg1003965.p2	8.880	+	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	-45610	+	TSC_hg19_v1_chr8_+_41386779 AK095334 AK313373	-94532	+	NM_032336 AK299207 BC027454 TSC_hg19_v1_chr8_+_41386745 BC005995	-94567	+	AB587362 AK057898 NM_152568	23571	-	AK223578 AK129864 BC007930 BC030957 BC014467 NM_001142445 NM_020478 NM_020480	41459	-	M28880 NM_000037 NM_020475 NM_020476 NM_020477 X16609 TSC_hg19_v1_chr8_-_41655141	173836	-	NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AK095334|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK313373|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##NM_032336|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK299207|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC027454|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC005995|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK057898|NKX6-3|157848|NK6 homeobox 3##NM_152568|NKX6-3|157848|NK6 homeobox 3##AK223578|ANK1|286|ankyrin 1, erythrocytic##AK129864|ANK1|286|ankyrin 1, erythrocytic##BC007930|ANK1|286|ankyrin 1, erythrocytic##BC030957|ANK1|286|ankyrin 1, erythrocytic##BC014467|ANK1|286|ankyrin 1, erythrocytic##NM_001142445|ANK1|286|ankyrin 1, erythrocytic##NM_020478|ANK1|286|ankyrin 1, erythrocytic##NM_020480|ANK1|286|ankyrin 1, erythrocytic##M28880|ANK1|286|ankyrin 1, erythrocytic##NM_000037|ANK1|286|ankyrin 1, erythrocytic##NM_020475|ANK1|286|ankyrin 1, erythrocytic##NM_020476|ANK1|286|ankyrin 1, erythrocytic##NM_020477|ANK1|286|ankyrin 1, erythrocytic##X16609|ANK1|286|ankyrin 1, erythrocytic	0.999147	0.0	denovo_WM_7:61:0.739
chr4	89780156	89780266	reg1002262.p1	8.874	+	AB385402 AB020721 TSC_hg19_v1_chr4_-_89744384 AK027138 BC033006 BC086875 BC058029 AK296932 NM_001015045 AK091787 AX747185	-35930	-	BC104883 TSC_hg19_v1_chr4_-_89618996 AL834329 AK054689 BC022544 NM_153757	-161236	-	AK296379 TSC_hg19_v1_chr4_+_89513611 AK289990 BC038960 D25215 NM_014606	-266590	+	CU687656 BC063126 BC041029 BC053569 BX647410 NM_014883	198008	-	AK091881 AX747234 TSC_hg19_v1_chr4_-_90032571	252348	-	AK027653 NM_145715	253756	+	AB020721|FAM13A|10144|family with sequence similarity 13, member A##AK027138|FAM13A|10144|family with sequence similarity 13, member A##BC033006|FAM13A|10144|family with sequence similarity 13, member A##BC086875|FAM13A|10144|family with sequence similarity 13, member A##BC058029|FAM13A|10144|family with sequence similarity 13, member A##AK296932|FAM13A|10144|family with sequence similarity 13, member A##NM_001015045|FAM13A|10144|family with sequence similarity 13, member A##AK091787|FAM13A|10144|family with sequence similarity 13, member A##BC104883|NAP1L5|266812|nucleosome assembly protein 1-like 5##AL834329|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK054689|NAP1L5|266812|nucleosome assembly protein 1-like 5##BC022544|NAP1L5|266812|nucleosome assembly protein 1-like 5##NM_153757|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK296379|HERC3|8916|hect domain and RLD 3##AK289990|HERC3|8916|hect domain and RLD 3##BC038960|HERC3|8916|hect domain and RLD 3##D25215|HERC3|8916|hect domain and RLD 3##NM_014606|HERC3|8916|hect domain and RLD 3##BC063126|FAM13A|10144|family with sequence similarity 13, member A##BC041029|FAM13A|10144|family with sequence similarity 13, member A##BC053569|FAM13A|10144|family with sequence similarity 13, member A##BX647410|FAM13A|10144|family with sequence similarity 13, member A##NM_014883|FAM13A|10144|family with sequence similarity 13, member A##AK091881|FAM13A|10144|family with sequence similarity 13, member A##AK027653|TIGD2|166815|tigger transposable element derived 2##NM_145715|TIGD2|166815|tigger transposable element derived 2	0.972041	0.0	denovo_WM_7:24:0.251	denovo_WM_7:26:0.514
chr6	137114773	137114953	reg1003055.p2	8.872	+	TSC_hg19_v1_chr6_-_137113721 AB209093	-1121	-	TSC_hg19_v1_chr6_-_137113641 NM_005923 U67156 BC088829	-1223	-	BC054503 TSC_hg19_v1_chr6_-_137113611	-1253	-	TSC_hg19_v1_chr6_+_137143699 NM_000288 BC031606 U88871	28839	+	TSC_hg19_v1_chr6_+_137143749 U76560 BC006268 AB529018 CR542054 CR542076 CU675317 CU689196	28912	+	AK316095 BC087842 NM_001008783 AK295424	128590	+	AB209093|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##NM_005923|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##U67156|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##BC088829|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##BC054503|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##NM_000288|PEX7|5191|peroxisomal biogenesis factor 7##BC031606|PEX7|5191|peroxisomal biogenesis factor 7##U88871|PEX7|5191|peroxisomal biogenesis factor 7##U76560|PEX7|5191|peroxisomal biogenesis factor 7##BC006268|PEX7|5191|peroxisomal biogenesis factor 7##CR542054|PEX7|5191|peroxisomal biogenesis factor 7##CR542076|PEX7|5191|peroxisomal biogenesis factor 7##AK316095|SLC35D3|340146|solute carrier family 35, member D3##BC087842|SLC35D3|340146|solute carrier family 35, member D3##NM_001008783|SLC35D3|340146|solute carrier family 35, member D3##AK295424|SLC35D3|340146|solute carrier family 35, member D3	0.993804	0.0	denovo_WM_7:78:0.981
chr14	38548695	38548794	reg1002095.p2	8.867	+	TSC_hg19_v1_chr14_-_38064444 NM_004496	-484280	-	TSC_hg19_v1_chr14_-_38064316 AK313785	-484428	-	AB463645 CU689794 AM392863 AM393239 AM393310 AM393369 TSC_hg19_v1_chr14_-_38064234 BC033890	-484538	-	TSC_hg19_v1_chr14_+_38677186 BX248780 NM_001049	128450	+	AK290868 TSC_hg19_v1_chr14_+_38678303 BC035618	129556	+	AB384936 DQ893328 DQ896644 TSC_hg19_v1_chr14_+_38678642	129875	+	NM_004496|FOXA1|3169|forkhead box A1##AK313785|FOXA1|3169|forkhead box A1##AM392863|FOXA1|3169|forkhead box A1##AM393239|FOXA1|3169|forkhead box A1##AM393310|FOXA1|3169|forkhead box A1##AM393369|FOXA1|3169|forkhead box A1##BC033890|FOXA1|3169|forkhead box A1##BX248780|SSTR1|6751|somatostatin receptor 1##NM_001049|SSTR1|6751|somatostatin receptor 1##AK290868|SSTR1|6751|somatostatin receptor 1##BC035618|SSTR1|6751|somatostatin receptor 1##DQ893328|SSTR1|6751|somatostatin receptor 1##DQ896644|SSTR1|6751|somatostatin receptor 1	0.0	0.0	
chr15	80311843	80311985	reg1002818.p2	8.866	+	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	-48363	-	TSC_hg19_v1_chr15_-_80216042 AF249277	-95876	-	NM_001100880 NM_001199757	-96251	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	40028	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	40115	+	TSC_hg19_v1_chr15_+_80352046 AL136598	40153	+	BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6##AL136598|ZFAND6|54469|zinc finger, AN1-type domain 6	1.81074	0.0	denovo_WM_7:24:0.794	denovo_WM_7:101:0.884
chr8	77897359	77897539	reg1002599.p1	8.866	+	AK131399 TSC_hg19_v1_chr8_+_77765961	-131560	+	AB083343 TSC_hg19_v1_chr8_+_77593533	-303921	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	-303939	+	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	14960	-	NM_001172086 NM_001172087	15830	-	NM_006823 NM_181839 S76965	1530886	+	AK131399|ZFHX4|79776|zinc finger homeobox 4##AB083343|ZFHX4|79776|zinc finger homeobox 4##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha	0.99742	0.0	denovo_WM_7:-28:0.493	denovo_WM_7:-29:0.493
chr5	71804237	71804363	reg1003171.p1	8.863	+	BC121053 BC121054 BX647592 BC029955 AK097115 NM_152625	-1117	-	TSC_hg19_v1_chr5_+_71616221 BC018720 AK303639	-188078	+	AK303776 TSC_hg19_v1_chr5_+_71616202 AK056761 NM_024754 AK298750	-188098	+	NM_002270 TSC_hg19_v1_chr5_+_72112487 AK299671 U70322 AK301021 AK308177 BC040340 AB528475	308190	+	NM_153188 TSC_hg19_v1_chr5_+_72143947	339641	+	TSC_hg19_v1_chr5_+_72143999 U72395 U72069	339707	+	BC121053|ZNF366|167465|zinc finger protein 366##BC121054|ZNF366|167465|zinc finger protein 366##BX647592|ZNF366|167465|zinc finger protein 366##BC029955|ZNF366|167465|zinc finger protein 366##AK097115|ZNF366|167465|zinc finger protein 366##NM_152625|ZNF366|167465|zinc finger protein 366##BC018720|PTCD2|79810|pentatricopeptide repeat domain 2##AK303639|PTCD2|79810|pentatricopeptide repeat domain 2##AK303776|PTCD2|79810|pentatricopeptide repeat domain 2##AK056761|PTCD2|79810|pentatricopeptide repeat domain 2##NM_024754|PTCD2|79810|pentatricopeptide repeat domain 2##AK298750|PTCD2|79810|pentatricopeptide repeat domain 2##NM_002270|TNPO1|3842|transportin 1##AK299671|TNPO1|3842|transportin 1##U70322|TNPO1|3842|transportin 1##AK301021|TNPO1|3842|transportin 1##AK308177|TNPO1|3842|transportin 1##BC040340|TNPO1|3842|transportin 1##NM_153188|TNPO1|3842|transportin 1##U72395|TNPO1|3842|transportin 1##U72069|TNPO1|3842|transportin 1	0.0	0.0	
chr9	131444893	131445004	reg1002758.p2	8.863	+	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	-25882	-	TSC_hg19_v1_chr9_-_131418938 BC001614	-25985	-	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-56205	+	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	1056	+	TSC_hg19_v1_chr9_+_131446108 D45198 AB464200 AM393022 JF729356	1191	+	NM_001248000	2416	+	BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##BC001614|WDR34|89891|WD repeat domain 34##AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene##D45198|SET|6418|SET nuclear oncogene##AM393022|SET|6418|SET nuclear oncogene##JF729356|SET|6418|SET nuclear oncogene##NM_001248000|SET|6418|SET nuclear oncogene	0.994464	0.0	
chr1	13994280	13994459	reg1003116.p2	8.862	+	NM_001006624 NM_001006625	-82403	+	NM_006474 NM_198389 BC014668 BC022812 TSC_hg19_v1_chr1_+_13910326 AY194238 AK075327 AK075345 AK312607 AF390106 AF030428 AJ225022 AB127958	-83980	+	BC016048 NM_001010847	-154170	-	TSC_hg19_v1_chr1_+_14026688 BC014468 NM_001135610	32355	+	NM_012231 NM_015866 U17838	36980	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	81516	+	NM_001006624|PDPN|10630|podoplanin##NM_001006625|PDPN|10630|podoplanin##NM_006474|PDPN|10630|podoplanin##NM_198389|PDPN|10630|podoplanin##BC014668|PDPN|10630|podoplanin##BC022812|PDPN|10630|podoplanin##AY194238|PDPN|10630|podoplanin##AK075327|PDPN|10630|podoplanin##AK075345|PDPN|10630|podoplanin##AK312607|PDPN|10630|podoplanin##AF390106|PDPN|10630|podoplanin##AF030428|PDPN|10630|podoplanin##AJ225022|PDPN|10630|podoplanin##AB127958|PDPN|10630|podoplanin##BC016048|LRRC38|126755|leucine rich repeat containing 38##NM_001010847|LRRC38|126755|leucine rich repeat containing 38##BC014468|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001135610|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain##U17838|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain	1.154961	0.0	denovo_WM_7:-40:0.973
chr17	33240733	33240887	reg1003117.p1	8.862	+	NM_207313	-333043	+	BC133004 BC136710 BC142651 AK126768 NM_207454	-334458	-	AB528767 BC105073 BC105075 M57502 AK312183 NM_002981	-550595	-	CU693272 AK301773 TSC_hg19_v1_chr17_-_33288425 AK225729 BC026125 AK225728 D78333	47625	-	TSC_hg19_v1_chr17_-_33288480 AK302344 BC027591 NM_001193529 NM_001193530 NM_006584	47692	-	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	47779	+	NM_207313|TMEM132E|124842|transmembrane protein 132E##BC133004|C17orf102|400591|chromosome 17 open reading frame 102##BC136710|C17orf102|400591|chromosome 17 open reading frame 102##BC142651|C17orf102|400591|chromosome 17 open reading frame 102##AK126768|C17orf102|400591|chromosome 17 open reading frame 102##NM_207454|C17orf102|400591|chromosome 17 open reading frame 102##BC105073|CCL1|6346|chemokine (C-C motif) ligand 1##BC105075|CCL1|6346|chemokine (C-C motif) ligand 1##M57502|CCL1|6346|chemokine (C-C motif) ligand 1##AK312183|CCL1|6346|chemokine (C-C motif) ligand 1##NM_002981|CCL1|6346|chemokine (C-C motif) ligand 1##AK301773|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225729|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC026125|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225728|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##D78333|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK302344|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC027591|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193529|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193530|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_006584|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830	0.998188	0.0	
chr15	100050950	100051121	reg1002536.p1	8.861	+	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	-259393	+	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	-259619	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	-261329	-	NM_001130926 NM_001130927 NM_001171894 NM_005587 TSC_hg19_v1_chr15_+_100106173 AB208985	55118	+	TSC_hg19_v1_chr15_+_100106196 AL831995 AK294207	55159	+	BC013437 TSC_hg19_v1_chr15_+_100106231 AK291835 X68504	55200	+	BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##NM_001130926|MEF2A|4205|myocyte enhancer factor 2A##NM_001130927|MEF2A|4205|myocyte enhancer factor 2A##NM_001171894|MEF2A|4205|myocyte enhancer factor 2A##NM_005587|MEF2A|4205|myocyte enhancer factor 2A##AB208985|MEF2A|4205|myocyte enhancer factor 2A##AL831995|MEF2A|4205|myocyte enhancer factor 2A##AK294207|MEF2A|4205|myocyte enhancer factor 2A##BC013437|MEF2A|4205|myocyte enhancer factor 2A##AK291835|MEF2A|4205|myocyte enhancer factor 2A##X68504|MEF2A|4205|myocyte enhancer factor 2A	1.994677	0.0	denovo_WM_7:-9:0.816
chr19	15427398	15427523	reg1002887.p1	8.861	+	AF386649 NM_014299 NM_058243 Y12059	-36199	-	BC115002 NM_001142886	-83648	-	BC132958 BC132960 AK026061 NM_024794	-84248	-	TSC_hg19_v1_chr19_-_15442714 BC030158 AK307664	15242	-	BC000156 TSC_hg19_v1_chr19_-_15443139	15678	-	TSC_hg19_v1_chr19_-_15443306 BC038988	15845	-	AF386649|BRD4|23476|bromodomain containing 4##NM_014299|BRD4|23476|bromodomain containing 4##NM_058243|BRD4|23476|bromodomain containing 4##Y12059|BRD4|23476|bromodomain containing 4##BC115002|EPHX3|79852|epoxide hydrolase 3##NM_001142886|EPHX3|79852|epoxide hydrolase 3##BC132958|EPHX3|79852|epoxide hydrolase 3##BC132960|EPHX3|79852|epoxide hydrolase 3##AK026061|EPHX3|79852|epoxide hydrolase 3##NM_024794|EPHX3|79852|epoxide hydrolase 3##BC030158|BRD4|23476|bromodomain containing 4##AK307664|BRD4|23476|bromodomain containing 4##BC000156|BRD4|23476|bromodomain containing 4##BC038988|BRD4|23476|bromodomain containing 4	1.228966	0.0	denovo_WM_7:-32:0.221	denovo_WM_7:-49:0.466
chr7	101949170	101949350	reg1001630.p2	8.861	+	TSC_hg19_v1_chr7_+_101928431 AB000520	-20817	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	-20863	+	M74099 NM_181552	-488379	+	NM_001146210	47628	-	TSC_hg19_v1_chr7_+_102004329 NM_001242713 BC063572 AK098276	55051	+	TSC_hg19_v1_chr7_+_102004338 BC048257 BC066362	55092	+	AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_020979|SH2B2|10603|SH2B adaptor protein 2##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)##NM_001242713|LOC100289561|100289561|uncharacterized LOC100289561##BC063572|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##AK098276|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough	1.985518	0.0	denovo_WM_7:-70:0.388	denovo_WM_7:-71:0.300	denovo_WM_7:-72:0.292	denovo_WM_7:-87:0.831
chr16	4464173	4464325	reg1002651.p1	8.860	+	AY166584 CU686679 TSC_hg19_v1_chr16_+_4431007 BC013767	-33263	+	TSC_hg19_v1_chr16_+_4421848 BC068575 NM_138440 AY358298 AY358299	-42349	+	TSC_hg19_v1_chr16_-_4401268 AF151894 AF349455 BC005024 AK026514 NM_016069	-62931	-	TSC_hg19_v1_chr16_-_4465899 AK094596	1638	-	HQ258676 TSC_hg19_v1_chr16_-_4466550	2295	-	AK025674 TSC_hg19_v1_chr16_-_4466581 BC117289 BC117291 BC032732 AK097238	2333	-	AY166584|VASN|114990|vasorin##BC013767|VASN|114990|vasorin##BC068575|VASN|114990|vasorin##NM_138440|VASN|114990|vasorin##AY358298|VASN|114990|vasorin##AY358299|VASN|114990|vasorin##AF151894|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##AF349455|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##BC005024|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##AK026514|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##NM_016069|PAM16|51025|presequence translocase-associated motor 16 homolog (S. cerevisiae)##AK094596|CORO7|79585|coronin 7##HQ258676|CORO7|79585|coronin 7##AK025674|CORO7|79585|coronin 7##BC117289|CORO7|79585|coronin 7##BC117291|CORO7|79585|coronin 7##BC032732|CORO7-PAM16|100529144|CORO7-PAM16 readthrough##AK097238|CORO7|79585|coronin 7	0.997851	0.0	denovo_WM_7:-47:0.305	denovo_WM_7:-48:0.305	denovo_WM_7:-49:0.305
chr1	84908073	84908224	reg1003592.p1	8.859	+	AF333389 NM_058248 BC080621 BC065182	-34057	+	AF274571 NM_021233 BC126136 BC126138 HQ258219	-43912	+	BC037973 NM_001134664	-139815	+	NM_025065 TSC_hg19_v1_chr1_+_84944949 AK022537 BC016051 CU677559 AF322053	36802	+	AF493873 BT006823 TSC_hg19_v1_chr1_-_84971803 AF038955	63649	-	TSC_hg19_v1_chr1_-_84971851 BC003563	63712	-	AF333389|DNASE2B|58511|deoxyribonuclease II beta##NM_058248|DNASE2B|58511|deoxyribonuclease II beta##BC080621|DNASE2B|58511|deoxyribonuclease II beta##BC065182|DNASE2B|58511|deoxyribonuclease II beta##AF274571|DNASE2B|58511|deoxyribonuclease II beta##NM_021233|DNASE2B|58511|deoxyribonuclease II beta##BC126136|DNASE2B|58511|deoxyribonuclease II beta##BC126138|DNASE2B|58511|deoxyribonuclease II beta##HQ258219|DNASE2B|58511|deoxyribonuclease II beta##BC037973|SAMD13|148418|sterile alpha motif domain containing 13##NM_001134664|SAMD13|148418|sterile alpha motif domain containing 13##NM_025065|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##AK022537|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##BC016051|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##AF322053|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##AF493873|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##BT006823|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##AF038955|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##BC003563|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5	0.813618	0.011822	denovo_WM_7:18:0.704
chr10	91061625	91061770	reg1003302.p1	8.858	+	TSC_hg19_v1_chr10_-_91011616 BC012287 X76488 NM_000235 NM_001127605	-50075	-	AK130882 TSC_hg19_v1_chr10_-_91011565	-50130	-	U08464 Z31690 TSC_hg19_v1_chr10_-_91011533 AK222760 AK290241 AK297079 AK314665 M74775	-50167	-	NM_001547 AK312831 BC005987 BC032839 TSC_hg19_v1_chr10_+_91061802 AK300431	58	+	NM_001549 AK290427 AF083470 AK312675 U52513 TSC_hg19_v1_chr10_+_91087771	25989	+	NM_001031683 AK297137 AF026939 BC001383 BC004977	30586	+	BC012287|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##X76488|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_000235|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_001127605|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK130882|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##U08464|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##Z31690|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK222760|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK290241|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK297079|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK314665|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##M74775|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_001547|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK312831|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC005987|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC032839|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK300431|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##NM_001549|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK290427|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF083470|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK312675|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##U52513|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001031683|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK297137|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF026939|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC001383|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC004977|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3	0.976018	0.0	denovo_WM_7:-23:0.884
chr17	26973927	26974101	reg1003047.p2	8.858	+	AB621823 TSC_hg19_v1_chr17_-_26972175 NM_014680	-1828	-	TSC_hg19_v1_chr17_-_26972167 BC050440	-1845	-	AK307216 TSC_hg19_v1_chr17_-_26972166	-1849	-	TSC_hg19_v1_chr17_-_26988925 BT006709 CR456708 DQ891990 DQ895180 CU674240 BC000500 BC001406 AK310890 D50645	14902	-	TSC_hg19_v1_chr17_-_26989199 NM_006923	15182	-	TSC_hg19_v1_chr17_+_26989222 AL833607	15195	+	NM_014680|KIAA0100|9703|KIAA0100##BC050440|KIAA0100|9703|KIAA0100##AK307216|KIAA0100|9703|KIAA0100##BT006709|SDF2|6388|stromal cell-derived factor 2##CR456708|SDF2|6388|stromal cell-derived factor 2##DQ891990|SDF2|6388|stromal cell-derived factor 2##DQ895180|SDF2|6388|stromal cell-derived factor 2##BC000500|SDF2|6388|stromal cell-derived factor 2##BC001406|SDF2|6388|stromal cell-derived factor 2##AK310890|SDF2|6388|stromal cell-derived factor 2##D50645|SDF2|6388|stromal cell-derived factor 2##NM_006923|SDF2|6388|stromal cell-derived factor 2##AL833607|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)	1.723728	0.976438	denovo_WM_7:-5:0.801	CTCF.p2:26:0.976	denovo_WM_7:-34:0.265	denovo_WM_7:-35:0.320
chr5	130593085	130593191	reg1003137.p1	8.858	+	TSC_hg19_v1_chr5_+_130506676 BC037930 BC047079	-86467	+	AK000803 NM_181705 TSC_hg19_v1_chr5_+_130506648	-86495	+	TSC_hg19_v1_chr5_-_130501019 NM_005340	-92095	-	NM_001038702 NM_020240 TSC_hg19_v1_chr5_+_130599737	6583	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	6618	+	AK312406 TSC_hg19_v1_chr5_+_130599768	6630	+	BC037930|LYRM7|90624|Lyrm7 homolog (mouse)##BC047079|LYRM7|90624|Lyrm7 homolog (mouse)##AK000803|LYRM7|90624|Lyrm7 homolog (mouse)##NM_181705|LYRM7|90624|Lyrm7 homolog (mouse)##NM_005340|HINT1|3094|histidine triad nucleotide binding protein 1##NM_001038702|CDC42SE2|56990|CDC42 small effector 2##NM_020240|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2	0.99174	0.0	denovo_WM_7:41:0.331	denovo_WM_7:42:0.331	denovo_WM_7:43:0.331
chr19	49999628	49999758	reg1002587.p2	8.857	+	TSC_hg19_v1_chr19_+_49999686 AK311809 D28407	-9	+	NM_001015 TSC_hg19_v1_chr19_+_49999653	-46	+	AK056837 AK291120 AK297859 BC070223 BC105605 D28409 NM_012423 TSC_hg19_v1_chr19_+_49990864 X56932 BC032107 BC065236 BC071929 BC000514 BC001675 BC001836 AK222747 BC062537 AB529025 CU687556 EU831455 EU831542 BC013230	-8810	+	TSC_hg19_v1_chr19_+_49999690 X06617 BC016378 BC070224 DQ893225 DQ896555	16	+	NM_001136019 BC091487	15884	+	TSC_hg19_v1_chr19_+_50015917 AK075532 BX647163	16201	+	AK311809|RPS11|6205|ribosomal protein S11##NM_001015|RPS11|6205|ribosomal protein S11##AK056837|RPL13A|23521|ribosomal protein L13a##AK291120|RPL13A|23521|ribosomal protein L13a##AK297859|RPL13A|23521|ribosomal protein L13a##BC070223|RPL13A|23521|ribosomal protein L13a##BC105605|RPL13A|23521|ribosomal protein L13a##NM_012423|RPL13A|23521|ribosomal protein L13a##X56932|RPL13A|23521|ribosomal protein L13a##BC032107|RPL13A|23521|ribosomal protein L13a##BC065236|RPL13A|23521|ribosomal protein L13a##BC071929|RPL13A|23521|ribosomal protein L13a##BC000514|RPL13A|23521|ribosomal protein L13a##BC001675|RPL13A|23521|ribosomal protein L13a##BC001836|RPL13A|23521|ribosomal protein L13a##AK222747|RPL13A|23521|ribosomal protein L13a##BC062537|RPL13A|23521|ribosomal protein L13a##EU831455|RPL13A|23521|ribosomal protein L13a##EU831542|RPL13A|23521|ribosomal protein L13a##BC013230|RPL13A|23521|ribosomal protein L13a##X06617|RPS11|6205|ribosomal protein S11##BC016378|RPS11|6205|ribosomal protein S11##BC070224|RPS11|6205|ribosomal protein S11##DQ893225|RPS11|6205|ribosomal protein S11##DQ896555|RPS11|6205|ribosomal protein S11##NM_001136019|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC091487|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##AK075532|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BX647163|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha	0.0	0.0	
chr13	31052006	31052170	reg1003136.p1	8.856	+	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	-12030	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	-12095	-	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-170519	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	139539	-	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	139875	+	AK314143 NM_001204406	235526	+	AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein	0.989015	0.0	denovo_WM_7:-15:0.977
chr16	57374028	57374208	reg1001504.p2	8.855	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-55539	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-55607	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-94985	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	18592	+	AK222692 TSC_hg19_v1_chr16_+_57406382	32267	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	32321	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	0.0	0.0	
chr3	27496466	27496634	reg1003066.p2	8.854	+	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	-85637	-	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-832250	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1664970	+	AF047033 AF089726 NM_003615	1694	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	29275	-	TSC_hg19_v1_chr3_-_27525893 AK309734	29380	-	AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.98887	0.0	denovo_WM_7:-40:0.532	denovo_WM_7:-41:0.457
chr19	12833253	12833323	reg1000120.p1	8.852	+	TSC_hg19_v1_chr19_-_12833356 BC063679 BC072420 NM_013433 BC018314 AK299485	-140	-	AY736034 TSC_hg19_v1_chr19_-_12807434 BC004290 AK302744 AK123037 NM_032301	-25864	-	TSC_hg19_v1_chr19_-_12792699 AK300498 NM_001930 NM_013406	-40575	-	NM_001136196 TSC_hg19_v1_chr19_-_12833473	195	-	TSC_hg19_v1_chr19_-_12834747 AF007748 AK056183 NM_001136195	1446	-	TSC_hg19_v1_chr19_-_12845478 CU677275 DQ891449 DQ894628 BC004533	12185	-	BC063679|TNPO2|30000|transportin 2##BC072420|TNPO2|30000|transportin 2##NM_013433|TNPO2|30000|transportin 2##BC018314|TNPO2|30000|transportin 2##AK299485|TNPO2|30000|transportin 2##AY736034|FBXW9|84261|F-box and WD repeat domain containing 9##BC004290|FBXW9|84261|F-box and WD repeat domain containing 9##AK302744|FBXW9|84261|F-box and WD repeat domain containing 9##AK123037|FBXW9|84261|F-box and WD repeat domain containing 9##NM_032301|FBXW9|84261|F-box and WD repeat domain containing 9##AK300498|DHPS|1725|deoxyhypusine synthase##NM_001930|DHPS|1725|deoxyhypusine synthase##NM_013406|DHPS|1725|deoxyhypusine synthase##NM_001136196|TNPO2|30000|transportin 2##AF007748|TNPO2|30000|transportin 2##AK056183|TNPO2|30000|transportin 2##NM_001136195|TNPO2|30000|transportin 2##DQ891449|C19orf43|79002|chromosome 19 open reading frame 43##DQ894628|C19orf43|79002|chromosome 19 open reading frame 43##BC004533|C19orf43|79002|chromosome 19 open reading frame 43	0.949915	0.0	
chr5	6728329	6728480	reg1003624.p1	8.852	+	NM_001171805 NM_006999 AF089896 BC084567	-13654	+	M32313 TSC_hg19_v1_chr5_+_6633683 BT006834 CU679027 DQ891537 DQ894726	-94730	+	AF113128 AK297208 AK297511 TSC_hg19_v1_chr5_+_6633541 AK313070 BC007033 AF052126 BC008673 AK315996 BC006373	-94848	+	AK308405 NM_001171806 AK303516	17718	+	TSC_hg19_v1_chr5_+_7396319 NM_020546 AF410885 AK127036 BC111743 AK304041	667864	+	BC053548 BC104204 BC104205 BC115361 NM_001089584	1122855	-	NM_001171805|PAPD7|11044|PAP associated domain containing 7##NM_006999|PAPD7|11044|PAP associated domain containing 7##AF089896|PAPD7|11044|PAP associated domain containing 7##BC084567|PAPD7|11044|PAP associated domain containing 7##M32313|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BT006834|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##DQ891537|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##DQ894726|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AF113128|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK297208|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK297511|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK313070|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BC007033|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AF052126|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BC008673|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK315996|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BC006373|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK308405|PAPD7|11044|PAP associated domain containing 7##NM_001171806|PAPD7|11044|PAP associated domain containing 7##AK303516|PAPD7|11044|PAP associated domain containing 7##NM_020546|ADCY2|108|adenylate cyclase 2 (brain)##AF410885|ADCY2|108|adenylate cyclase 2 (brain)##AK127036|ADCY2|108|adenylate cyclase 2 (brain)##BC111743|ADCY2|108|adenylate cyclase 2 (brain)##AK304041|ADCY2|108|adenylate cyclase 2 (brain)##BC053548|C5orf49|134121|chromosome 5 open reading frame 49##BC104204|C5orf49|134121|chromosome 5 open reading frame 49##BC104205|C5orf49|134121|chromosome 5 open reading frame 49##BC115361|C5orf49|134121|chromosome 5 open reading frame 49##NM_001089584|C5orf49|134121|chromosome 5 open reading frame 49	0.0	0.0	
chr16	46863800	46863949	reg1003631.p1	8.851	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-81712	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-140277	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-140309	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	1214	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	54407	+	NM_001142466 AK094971	55228	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.990439	0.0	denovo_WM_7:-27:0.814
chr5	39579099	39579231	reg1002927.p1	8.851	+	TSC_hg19_v1_chr5_-_39425304 NM_001244871 NM_001343	-153848	-	TSC_hg19_v1_chr5_-_39425082 AK314381	-154101	-	BC003064 U53446 TSC_hg19_v1_chr5_-_39424971	-154214	-	TSC_hg19_v1_chr5_+_40680033 BC027934 NM_000958	1100862	+	TSC_hg19_v1_chr5_+_40680042 L25124	1100879	+	AF023244 BC036536 BC015701 AK312560 AK307131 AK303119 NM_012382	1176875	-	NM_001244871|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##NM_001343|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##AK314381|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC003064|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##U53446|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC027934|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##NM_000958|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##L25124|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##AF023244|TTC33|23548|tetratricopeptide repeat domain 33##BC036536|TTC33|23548|tetratricopeptide repeat domain 33##BC015701|TTC33|23548|tetratricopeptide repeat domain 33##AK312560|TTC33|23548|tetratricopeptide repeat domain 33##AK307131|TTC33|23548|tetratricopeptide repeat domain 33##AK303119|TTC33|23548|tetratricopeptide repeat domain 33##NM_012382|TTC33|23548|tetratricopeptide repeat domain 33	1.877775	0.940951	CTCF.p2:14:0.941	denovo_WM_7:-23:0.535	denovo_WM_7:-24:0.459	denovo_WM_7:102:0.857
chr7	92261580	92261713	reg1002426.p3	8.851	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-41948	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-42004	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-103540	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	201121	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	201574	-	AK313491 TSC_hg19_v1_chr7_-_92465884	204252	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.915328	0.0	denovo_WM_7:-10:0.234	denovo_WM_7:-11:0.361	denovo_WM_7:-12:0.310
chrX	24824080	24824257	reg1001783.p1	8.851	+	NM_016937 X06745 TSC_hg19_v1_chrX_+_24712066	-112103	+	TSC_hg19_v1_chrX_+_24712045 BX648513	-112118	+	TSC_hg19_v1_chrX_-_24690740 BC045634 AK296333 AK226121 NM_001163264	-133309	-	BC169334 TSC_hg19_v1_chrX_-_25031209	207025	-	NM_139058 TSC_hg19_v1_chrX_-_25034074	209905	-	NM_173699 BC029525 AK057361	1332318	+	NM_016937|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##X06745|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##BX648513|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##BC045634|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta##AK296333|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta##AK226121|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta##NM_001163264|PCYT1B|9468|phosphate cytidylyltransferase 1, choline, beta##BC169334|ARX|170302|aristaless related homeobox##NM_139058|ARX|170302|aristaless related homeobox##NM_173699|MAGEB18|286514|melanoma antigen family B, 18##BC029525|MAGEB18|286514|melanoma antigen family B, 18##AK057361|MAGEB18|286514|melanoma antigen family B, 18	2.973395	0.0	denovo_WM_7:9:0.214	denovo_WM_7:50:0.214
chr13	29098200	29098380	reg1001351.p2	8.850	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	-29046	-	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	-385624	+	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	-423603	-	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	134918	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	135004	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	194765	-	BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3	0.0	0.0	
chr16	74700735	74700903	reg1000081.p1	8.850	+	TSC_hg19_v1_chr16_-_74700775 NM_018124	-42	-	TSC_hg19_v1_chr16_-_74700758 AK291200	-67	-	TSC_hg19_v1_chr16_-_74700738 BC059371	-89	-	BC028141 AK091708 AX747141 NM_001142497 NM_152649	33918	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	107766	-	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	107905	-	NM_018124|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##BC059371|RFWD3|55159|ring finger and WD repeat domain 3##BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase	0.0	0.0	
chr19	1903533	1903640	reg1001293.p2	8.850	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-18082	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-18115	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-18141	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	1766	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	1819	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	37577	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	2.064802	0.0	denovo_WM_7:-12:0.395	denovo_WM_7:-13:0.297	denovo_WM_7:-29:0.295	denovo_WM_7:-30:0.393
chr8	42011080	42011242	reg1003196.p1	8.850	+	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	-628	+	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	-101662	-	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-256851	-	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	53927	-	AK289387 AK290575 NM_000930 NM_033011 TSC_hg19_v1_chr8_-_42065195	54033	-	TSC_hg19_v1_chr8_+_42128819 NM_001190720 NM_001242778 NM_001556	117647	+	NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue##AK289387|PLAT|5327|plasminogen activator, tissue##AK290575|PLAT|5327|plasminogen activator, tissue##NM_000930|PLAT|5327|plasminogen activator, tissue##NM_033011|PLAT|5327|plasminogen activator, tissue##NM_001190720|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001242778|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001556|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	0.99751	0.0	denovo_WM_7:23:0.976
chr2	200528022	200528157	reg1002697.p1	8.849	+	AK291463 NM_015265	-192101	-	TSC_hg19_v1_chr2_-_200329812 AB209376 NM_001172517	-198269	-	AB028957 TSC_hg19_v1_chr2_-_200325214	-202848	-	AB568489 TSC_hg19_v1_chr2_-_200715872	187774	-	BC039445 TSC_hg19_v1_chr2_-_200715916	187824	-	TSC_hg19_v1_chr2_+_200775981 NM_153689	247888	+	AK291463|SATB2|23314|SATB homeobox 2##NM_015265|SATB2|23314|SATB homeobox 2##AB209376|SATB2|23314|SATB homeobox 2##NM_001172517|SATB2|23314|SATB homeobox 2##AB028957|SATB2|23314|SATB homeobox 2##AB568489|FONG|348751|uncharacterized LOC348751##BC039445|FONG|348751|uncharacterized LOC348751##NM_153689|C2orf69|205327|chromosome 2 open reading frame 69	1.949336	0.0	denovo_WM_7:-5:0.842	denovo_WM_7:-20:0.852
chr7	99994291	99994471	reg1001299.p1	8.849	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	-23176	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	-23285	+	AJ400845 NM_178238 AF161081	-38750	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	31921	-	NM_001194990 NM_001194991 NM_001194992 TSC_hg19_v1_chr7_+_100026412	32031	+	TSC_hg19_v1_chr7_+_100026415 AK055964	32047	+	AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_001194990|MEPCE|56257|methylphosphate capping enzyme##NM_001194991|MEPCE|56257|methylphosphate capping enzyme##NM_001194992|MEPCE|56257|methylphosphate capping enzyme##AK055964|MEPCE|56257|methylphosphate capping enzyme	0.935554	0.0	denovo_WM_7:-89:0.348	denovo_WM_7:-97:0.451
chr1	110359098	110359256	reg1003519.p1	8.848	+	AY074930 TSC_hg19_v1_chr1_-_110306546 AK307932 AK310979 AK308196 AK025175 AK225235 BC012926 AK292198 AK290261 NM_024526 NM_133181 NM_139053	-52593	-	BC008790 NM_000849	-75518	-	BT019945 CR542108 AB527634 DQ891834 EU176637 BC000088 EF363096 J05459 AB209816 AK313444 TSC_hg19_v1_chr1_-_110282939 AK304300	-76249	-	NM_000757 NM_172210 NM_172212	94055	+	BC021117 TSC_hg19_v1_chr1_+_110453470 AK291660 M37435 M27087 U22386 AB527768 M64592	94373	+	AF315687 TSC_hg19_v1_chr1_+_110527316	168134	+	AY074930|EPS8L3|79574|EPS8-like 3##AK307932|EPS8L3|79574|EPS8-like 3##AK310979|EPS8L3|79574|EPS8-like 3##AK308196|EPS8L3|79574|EPS8-like 3##AK025175|EPS8L3|79574|EPS8-like 3##AK225235|EPS8L3|79574|EPS8-like 3##BC012926|EPS8L3|79574|EPS8-like 3##AK292198|EPS8L3|79574|EPS8-like 3##AK290261|EPS8L3|79574|EPS8-like 3##NM_024526|EPS8L3|79574|EPS8-like 3##NM_133181|EPS8L3|79574|EPS8-like 3##NM_139053|EPS8L3|79574|EPS8-like 3##BC008790|GSTM3|2947|glutathione S-transferase mu 3 (brain)##NM_000849|GSTM3|2947|glutathione S-transferase mu 3 (brain)##BT019945|GSTM3|2947|glutathione S-transferase mu 3 (brain)##CR542108|GSTM3|2947|glutathione S-transferase mu 3 (brain)##DQ891834|GSTM3|2947|glutathione S-transferase mu 3 (brain)##EU176637|GSTM3|2947|glutathione S-transferase mu 3 (brain)##BC000088|GSTM3|2947|glutathione S-transferase mu 3 (brain)##EF363096|GSTM3|2947|glutathione S-transferase mu 3 (brain)##J05459|GSTM3|2947|glutathione S-transferase mu 3 (brain)##AB209816|GSTM3|2947|glutathione S-transferase mu 3 (brain)##AK313444|GSTM3|2947|glutathione S-transferase mu 3 (brain)##AK304300|GSTM3|2947|glutathione S-transferase mu 3 (brain)##NM_000757|CSF1|1435|colony stimulating factor 1 (macrophage)##NM_172210|CSF1|1435|colony stimulating factor 1 (macrophage)##NM_172212|CSF1|1435|colony stimulating factor 1 (macrophage)##BC021117|CSF1|1435|colony stimulating factor 1 (macrophage)##AK291660|CSF1|1435|colony stimulating factor 1 (macrophage)##M37435|CSF1|1435|colony stimulating factor 1 (macrophage)##M27087|CSF1|1435|colony stimulating factor 1 (macrophage)##U22386|CSF1|1435|colony stimulating factor 1 (macrophage)##M64592|CSF1|1435|colony stimulating factor 1 (macrophage)##AF315687|AHCYL1|10768|adenosylhomocysteinase-like 1	0.56208	0.0	denovo_WM_7:-24:0.545
chr13	33104973	33105132	reg1003349.p1	8.845	+	CU692492 TSC_hg19_v1_chr13_-_33002268 BC022188 AL049785 AL049786 AL049787 U50527 BC011650 BC068049 NM_001079691 NM_052818	-102694	-	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	-215435	+	BC146956 BC146965 NM_001136571	-218963	-	Z36834 TSC_hg19_v1_chr13_-_33112933 BC010643 U50532 AL049783 AK298546 AK312924 NM_014887 NM_033111	7873	-	TSC_hg19_v1_chr13_+_33160588 NM_015032	55511	+	TSC_hg19_v1_chr13_+_33160610 AL137201	55566	+	BC022188|N4BP2L1|90634|NEDD4 binding protein 2-like 1##AL049785|N4BP2L1|90634|NEDD4 binding protein 2-like 1##AL049786|N4BP2L1|90634|NEDD4 binding protein 2-like 1##AL049787|N4BP2L1|90634|NEDD4 binding protein 2-like 1##U50527|N4BP2L1|90634|NEDD4 binding protein 2-like 1##BC068049|N4BP2L1|90634|NEDD4 binding protein 2-like 1##NM_001079691|N4BP2L1|90634|NEDD4 binding protein 2-like 1##NM_052818|N4BP2L1|90634|NEDD4 binding protein 2-like 1##NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##Z36834|N4BP2L2|10443|NEDD4 binding protein 2-like 2##BC010643|N4BP2L2|10443|NEDD4 binding protein 2-like 2##U50532|N4BP2L2|10443|NEDD4 binding protein 2-like 2##AL049783|N4BP2L2|10443|NEDD4 binding protein 2-like 2##AK298546|N4BP2L2|10443|NEDD4 binding protein 2-like 2##AK312924|N4BP2L2|10443|NEDD4 binding protein 2-like 2##NM_014887|N4BP2L2|10443|NEDD4 binding protein 2-like 2##NM_033111|N4BP2L2|10443|NEDD4 binding protein 2-like 2##NM_015032|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AL137201|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	0.999812	0.0	denovo_WM_7:-15:0.230	denovo_WM_7:-16:0.230	denovo_WM_7:-17:0.230	denovo_WM_7:-18:0.230
chr9	880727	880871	reg1002936.p1	8.845	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-39036	+	TSC_hg19_v1_chr9_+_706828 BC038116 NM_153186	-173969	+	AB205112 TSC_hg19_v1_chr9_+_686677	-194133	+	NM_021240 BC113584 BC117245	96166	+	AF193873 TSC_hg19_v1_chr9_+_977425	96606	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	169545	+	AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC038116|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_153186|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2	1.244738	0.0	denovo_WM_7:-66:0.256
chr2	48134033	48134183	reg1003250.p1	8.843	+	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	-1315	-	AK304140 AK315108 NM_025133	-18257	-	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	-123812	+	TSC_hg19_v1_chr2_+_48541851 NM_002158 BC063305	407710	+	AY134855 NM_001135629 NM_001193475 NM_152994 TSC_hg19_v1_chr2_+_48667936 AK172762 AK122900 AY092062 BC111059 AK307755 BC117279 BC143466 BC143463 BC040721	533864	+	AK309740 NM_001198593 TSC_hg19_v1_chr2_+_48757177	623013	+	BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##NM_002158|FOXN2|3344|forkhead box N2##BC063305|FOXN2|3344|forkhead box N2##AY134855|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001135629|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001193475|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_152994|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK172762|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK122900|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AY092062|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC111059|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK307755|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC117279|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143466|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143463|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC040721|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK309740|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##NM_001198593|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough	0.0	0.0	
chr4	154360733	154360913	reg1003201.p2	8.843	+	AK312172 BC032142 TSC_hg19_v1_chr4_+_154265868 AY028916	-94948	+	TSC_hg19_v1_chr4_+_154265799 NM_001253861 NM_032117	-95036	+	TSC_hg19_v1_chr4_+_154178530 BC025417	-182284	+	TSC_hg19_v1_chr4_+_154387511 NM_001131007 NM_015196 AK092270 AX747443 AK308448	26669	+	TSC_hg19_v1_chr4_+_154605403 AF424049 AF424050 AF424051 AF424052 AF424053	244575	+	TSC_hg19_v1_chr4_+_154605431 NM_003264	244607	+	AK312172|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC032142|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##AY028916|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_001253861|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_032117|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC025417|TRIM2|23321|tripartite motif containing 2##NM_001131007|KIAA0922|23240|KIAA0922##NM_015196|KIAA0922|23240|KIAA0922##AK092270|KIAA0922|23240|KIAA0922##AK308448|KIAA0922|23240|KIAA0922##AF424049|TLR2|7097|toll-like receptor 2##NM_003264|TLR2|7097|toll-like receptor 2	0.994629	0.019792	
chr19	9977060	9977188	reg1002604.p1	8.842	+	BC031971 TSC_hg19_v1_chr19_+_9946188	-30960	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	-31173	+	TSC_hg19_v1_chr19_+_9938597 AK309258 AF313915 BC007053 BC110839	-38511	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	70000	-	TSC_hg19_v1_chr19_-_10121181 AF177941 NM_015719	144019	-	DQ426888 AF229845 NM_015725	146768	+	BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK309258|UBL5|59286|ubiquitin-like 5##AF313915|UBL5|59286|ubiquitin-like 5##BC007053|UBL5|59286|ubiquitin-like 5##BC110839|UBL5|59286|ubiquitin-like 5##DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2##AF177941|COL5A3|50509|collagen, type V, alpha 3##NM_015719|COL5A3|50509|collagen, type V, alpha 3##AF229845|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_015725|RDH8|50700|retinol dehydrogenase 8 (all-trans)	0.999414	0.0	
chr18	56325591	56325686	reg1001883.p1	8.841	+	BX647796 NM_052947	-29450	-	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-436788	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-436835	+	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	13003	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	13090	+	TSC_hg19_v1_chr18_+_56338790 AB026118	13159	+	BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AB026118|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.994583	0.0	
chr15	40701572	40701709	reg1002540.p1	8.840	+	TSC_hg19_v1_chr15_+_40698024 AK315296 BT007145 DQ892577 DQ895793	-3592	+	TSC_hg19_v1_chr15_+_40698004 M34192 BC017202	-3632	+	TSC_hg19_v1_chr15_+_40697995 AK122922	-3654	+	TSC_hg19_v1_chr15_+_40733353 BC022782 NM_014952	31723	+	NM_130468 AB066595 BC049214 TSC_hg19_v1_chr15_+_40763222 BC053633 AF282905 AK074739 CU690606 AF401222 AY358446 BC023653	61702	+	AK092214 AX747411 AL832032 AK098781 TSC_hg19_v1_chr15_-_40857211	155562	-	AK315296|IVD|3712|isovaleryl-CoA dehydrogenase##BT007145|IVD|3712|isovaleryl-CoA dehydrogenase##DQ892577|IVD|3712|isovaleryl-CoA dehydrogenase##DQ895793|IVD|3712|isovaleryl-CoA dehydrogenase##M34192|IVD|3712|isovaleryl-CoA dehydrogenase##BC017202|IVD|3712|isovaleryl-CoA dehydrogenase##AK122922|IVD|3712|isovaleryl-CoA dehydrogenase##BC022782|BAHD1|22893|bromo adjacent homology domain containing 1##NM_014952|BAHD1|22893|bromo adjacent homology domain containing 1##NM_130468|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AB066595|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC049214|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC053633|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF282905|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AK074739|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF401222|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AY358446|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC023653|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AK092214|C15orf57|90416|chromosome 15 open reading frame 57##AL832032|C15orf57|90416|chromosome 15 open reading frame 57##AK098781|C15orf57|90416|chromosome 15 open reading frame 57	0.986581	0.0	denovo_WM_7:-29:0.950
chr14	23357960	23358089	reg1001063.p1	8.839	+	AK299238 AK096283 NM_173527 BC035663	-5589	+	TSC_hg19_v1_chr14_+_23341364 AL834518 AK291030 BC113714 BC113716	-16602	+	TSC_hg19_v1_chr14_+_23340981 NM_014045 AY358399 BX161500	-17003	+	TSC_hg19_v1_chr14_-_23388350 BX161440 BC024208 BC106012 AL834198 AF087905 AK001344 AF275678 AK125593 AK225792 AK295448 AK303668 AK308055 AK315620	30302	-	TSC_hg19_v1_chr14_-_23388359 BC002566	30343	-	TSC_hg19_v1_chr14_-_23388390 NM_001077351 NM_001077352 NM_018107	30368	-	AK299238|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##AK096283|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##NM_173527|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##BC035663|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##AL834518|LRP10|26020|low density lipoprotein receptor-related protein 10##AK291030|LRP10|26020|low density lipoprotein receptor-related protein 10##BC113714|LRP10|26020|low density lipoprotein receptor-related protein 10##BC113716|LRP10|26020|low density lipoprotein receptor-related protein 10##NM_014045|LRP10|26020|low density lipoprotein receptor-related protein 10##AY358399|LRP10|26020|low density lipoprotein receptor-related protein 10##BX161500|LRP10|26020|low density lipoprotein receptor-related protein 10##BX161440|RBM23|55147|RNA binding motif protein 23##BC024208|RBM23|55147|RNA binding motif protein 23##BC106012|RBM23|55147|RNA binding motif protein 23##AL834198|RBM23|55147|RNA binding motif protein 23##AF087905|RBM23|55147|RNA binding motif protein 23##AK001344|RBM23|55147|RNA binding motif protein 23##AF275678|RBM23|55147|RNA binding motif protein 23##AK125593|RBM23|55147|RNA binding motif protein 23##AK225792|RBM23|55147|RNA binding motif protein 23##AK295448|RBM23|55147|RNA binding motif protein 23##AK303668|RBM23|55147|RNA binding motif protein 23##AK308055|RBM23|55147|RNA binding motif protein 23##AK315620|RBM23|55147|RNA binding motif protein 23##BC002566|RBM23|55147|RNA binding motif protein 23##NM_001077351|RBM23|55147|RNA binding motif protein 23##NM_001077352|RBM23|55147|RNA binding motif protein 23##NM_018107|RBM23|55147|RNA binding motif protein 23	1.995669	0.0	denovo_WM_7:34:0.613	denovo_WM_7:35:0.332	denovo_WM_7:49:0.281	denovo_WM_7:50:0.561
chr4	147262088	147262227	reg1002784.p1	8.839	+	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	-165290	+	BC033879 TSC_hg19_v1_chr4_-_146859976	-402189	-	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	-402480	-	AM392861 BC146684 CU687734 DQ122860 DQ122861 DQ871036 EU831657 EU831663 EU831740 EU831744 CR936751 BC120970 BC120971 BC127626 BC127627 BC148252 AK291046 BC063471 AL136728 TSC_hg19_v1_chr4_-_147443093 BC023288 AY346324 BC150308 CR933647 NM_001029998 NM_032128	180839	-	TSC_hg19_v1_chr4_+_147560044 AK314982 NM_004575 U06233 BC136344 BC136345	297934	+	AK301807 BC024193 AK093145 AX747953 AK225725 AF345910 AK314066 NM_031956	604841	-	NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##AM392861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC146684|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122860|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ871036|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831657|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831663|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831740|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831744|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR936751|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120970|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120971|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127626|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127627|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC148252|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK291046|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC063471|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AL136728|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC023288|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AY346324|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC150308|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR933647|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_001029998|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_032128|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK314982|POU4F2|5458|POU class 4 homeobox 2##NM_004575|POU4F2|5458|POU class 4 homeobox 2##U06233|POU4F2|5458|POU class 4 homeobox 2##BC136344|POU4F2|5458|POU class 4 homeobox 2##BC136345|POU4F2|5458|POU class 4 homeobox 2##AK301807|TTC29|83894|tetratricopeptide repeat domain 29##BC024193|TTC29|83894|tetratricopeptide repeat domain 29##AK093145|TTC29|83894|tetratricopeptide repeat domain 29##AK225725|TTC29|83894|tetratricopeptide repeat domain 29##AF345910|TTC29|83894|tetratricopeptide repeat domain 29##AK314066|TTC29|83894|tetratricopeptide repeat domain 29##NM_031956|TTC29|83894|tetratricopeptide repeat domain 29	0.0	0.455681	CTCF.p2:-41:0.456
chr7	5269490	5269658	reg1003454.p1	8.839	+	BC016912 AF151808 NM_001033520 AY691426	-15682	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-39589	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-39659	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	53032	+	TSC_hg19_v1_chr7_-_5460842 BC140723	191332	-	AY129022 TSC_hg19_v1_chr7_-_5461555	191967	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.998342	0.0	denovo_WM_7:-2:0.229	denovo_WM_7:-3:0.229	denovo_WM_7:-4:0.229	denovo_WM_7:-5:0.229
chr11	66379131	66379264	reg1001859.p2	8.837	+	TSC_hg19_v1_chr11_+_66360672 AY113179 AF002210 NM_005125 BC105016 BC112055 CR541928	-18499	+	CU689898 TSC_hg19_v1_chr11_-_66360516 AK001648 BC034469 NM_018219	-18676	-	DQ893245 AJ007331 TSC_hg19_v1_chr11_-_66336078 AK313657 BC036451 AF136279 BC011682 BC013359 AF088886 NM_003793	-43172	-	NM_001198836 NM_001198837 NM_001198845 NM_001198846 NM_006328 TSC_hg19_v1_chr11_+_66384100 AF315632 AF315633 EU287938 AK222830 AK297907 AK307254 AK021768 AK292805 AF080561 BC000488 BC023619 DQ294957 EU287939 EU446504	4924	+	AB464693 TSC_hg19_v1_chr11_+_66395849	16594	+	NM_001198843 NM_001198844 NM_002896 TSC_hg19_v1_chr11_+_66406176 AK303984 BC021120 AK225071 BC032735	26936	+	AY113179|CCS|9973|copper chaperone for superoxide dismutase##AF002210|CCS|9973|copper chaperone for superoxide dismutase##NM_005125|CCS|9973|copper chaperone for superoxide dismutase##BC105016|CCS|9973|copper chaperone for superoxide dismutase##BC112055|CCS|9973|copper chaperone for superoxide dismutase##CR541928|CCS|9973|copper chaperone for superoxide dismutase##AK001648|CCDC87|55231|coiled-coil domain containing 87##BC034469|CCDC87|55231|coiled-coil domain containing 87##NM_018219|CCDC87|55231|coiled-coil domain containing 87##DQ893245|CTSF|8722|cathepsin F##AJ007331|CTSF|8722|cathepsin F##AK313657|CTSF|8722|cathepsin F##BC036451|CTSF|8722|cathepsin F##AF136279|CTSF|8722|cathepsin F##BC011682|CTSF|8722|cathepsin F##BC013359|CTSF|8722|cathepsin F##AF088886|CTSF|8722|cathepsin F##NM_003793|CTSF|8722|cathepsin F##NM_001198836|RBM14|10432|RNA binding motif protein 14##NM_001198837|RBM14|10432|RNA binding motif protein 14##NM_001198845|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_001198846|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_006328|RBM14|10432|RNA binding motif protein 14##AF315632|RBM14|10432|RNA binding motif protein 14##AF315633|RBM14|10432|RNA binding motif protein 14##AK222830|RBM14|10432|RNA binding motif protein 14##AK021768|RBM14|10432|RNA binding motif protein 14##AF080561|RBM14|10432|RNA binding motif protein 14##BC000488|RBM14|10432|RNA binding motif protein 14##BC023619|RBM14|10432|RNA binding motif protein 14##DQ294957|RBM14|10432|RNA binding motif protein 14##EU446504|RBM14|10432|RNA binding motif protein 14##NM_001198843|RBM4|5936|RNA binding motif protein 4##NM_001198844|RBM4|5936|RNA binding motif protein 4##NM_002896|RBM4|5936|RNA binding motif protein 4##AK303984|RBM4|5936|RNA binding motif protein 4##BC021120|RBM4|5936|RNA binding motif protein 4##AK225071|RBM4|5936|RNA binding motif protein 4##BC032735|RBM4|5936|RNA binding motif protein 4	0.98847	0.0	denovo_WM_7:45:0.500	denovo_WM_7:48:0.333
chr18	56219289	56219429	reg1003710.p1	8.837	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-330509	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-330556	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-330597	+	BX647796 NM_052947	76829	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	119282	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	119369	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.0	0.0	
chr2	216814839	216814958	reg1002905.p1	8.836	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-514116	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-514378	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-524926	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	63438	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	131646	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	131794	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.0	0.0	
chrX	10066254	10066408	reg1002676.p2	8.836	+	BC098455 NM_015691	-82538	+	NM_001195081	-130934	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-311788	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	58723	+	AF041210 AB384764 AY539988 AY539994 AY540022 AY540023 EU446510 NM_001193278 NM_001193279 NM_001193280 NM_001193281	469228	-	AF035360 NM_001193277 AY112903	478573	-	BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC140866|SHROOM2|357|shroom family member 2##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4##AF041210|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539988|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539994|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540022|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540023|MID1|4281|midline 1 (Opitz/BBB syndrome)##EU446510|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193278|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193279|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193280|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193281|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)	0.997602	0.0	denovo_WM_7:-23:0.853
chr15	91565831	91566011	reg1001330.p1	8.835	+	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	-151	-	CU677627 TSC_hg19_v1_chr15_-_91565525	-419	-	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	-28155	-	NM_001167580 TSC_hg19_v1_chr15_+_91643185 AK294902	77288	+	TSC_hg19_v1_chr15_+_91643505 NM_014848 BC030011	77565	+	TSC_hg19_v1_chr15_+_91643558 AF052188	77638	+	BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##NM_001167580|SV2B|9899|synaptic vesicle glycoprotein 2B##AK294902|SV2B|9899|synaptic vesicle glycoprotein 2B##NM_014848|SV2B|9899|synaptic vesicle glycoprotein 2B##BC030011|SV2B|9899|synaptic vesicle glycoprotein 2B##AF052188|SV2B|9899|synaptic vesicle glycoprotein 2B	0.0	0.0	
chrX	117665343	117665468	reg1002508.p2	8.835	+	AY692226 NM_144658 TSC_hg19_v1_chrX_+_117629874	-35533	+	TSC_hg19_v1_chrX_+_117526665 AL834210	-138718	+	TSC_hg19_v1_chrX_+_117480490 AM393332 AM393787 EU831942 EU832037 AK304432	-184943	+	TSC_hg19_v1_chrX_+_117861562 BC015768 NM_001560 Y10659 U81379 U81380 AK313467 Y09328 BC009960 AB528371 DQ893454 DQ896296 AB209849	196162	+	TSC_hg19_v1_chrX_+_117957786 AK122676 BC036572 BC031241 BC057841 NM_173798 BC018066	292417	+	TSC_hg19_v1_chrX_+_118108580 AK091777 AK290198 AX747177	443175	+	AY692226|DOCK11|139818|dedicator of cytokinesis 11##NM_144658|DOCK11|139818|dedicator of cytokinesis 11##AL834210|WDR44|54521|WD repeat domain 44##AM393332|WDR44|54521|WD repeat domain 44##AM393787|WDR44|54521|WD repeat domain 44##EU831942|WDR44|54521|WD repeat domain 44##EU832037|WDR44|54521|WD repeat domain 44##AK304432|WDR44|54521|WD repeat domain 44##BC015768|IL13RA1|3597|interleukin 13 receptor, alpha 1##NM_001560|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y10659|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81379|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81380|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK313467|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y09328|IL13RA1|3597|interleukin 13 receptor, alpha 1##BC009960|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ893454|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ896296|IL13RA1|3597|interleukin 13 receptor, alpha 1##AB209849|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK122676|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC036572|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC031241|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC057841|ZCCHC12|170261|zinc finger, CCHC domain containing 12##NM_173798|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC018066|ZCCHC12|170261|zinc finger, CCHC domain containing 12##AK091777|LONRF3|79836|LON peptidase N-terminal domain and ring finger 3##AK290198|LONRF3|79836|LON peptidase N-terminal domain and ring finger 3	1.991732	0.0	
chr12	112202376	112202556	reg1003013.p2	8.834	+	AK092356 AK310923 AX747497 TSC_hg19_v1_chr12_+_112123871 AL832043 BC015056 AY323912 BC126358	-78560	+	TSC_hg19_v1_chr12_+_112123859 NM_001136538 NM_025247	-78612	+	TSC_hg19_v1_chr12_-_112123771 NM_006768	-78670	-	NM_000690 NM_001204889 TSC_hg19_v1_chr12_+_112204694	2226	+	TSC_hg19_v1_chr12_+_112204765 AY621070 BC002967 X05409 AK223373 AK301375 Y00109 AK314856 BC071839 AB385105 CR456991 CU678320	2282	+	TSC_hg19_v1_chr12_-_112279735 BC071748 BC007973 BC015633 BC032560 AK124158 BC107695	77266	-	AK092356|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AK310923|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AL832043|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC015056|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AY323912|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC126358|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##NM_001136538|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##NM_025247|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##NM_006768|BRAP|8315|BRCA1 associated protein##NM_000690|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##NM_001204889|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AY621070|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC002967|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##X05409|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK223373|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK301375|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##Y00109|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK314856|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC071839|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##CR456991|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC007973|C12orf47|51275|chromosome 12 open reading frame 47##BC015633|C12orf47|51275|chromosome 12 open reading frame 47##BC032560|C12orf47|51275|chromosome 12 open reading frame 47	0.058792	0.0	
chr18	30819407	30819525	reg1002407.p1	8.834	+	BC021267 AB037805 NM_020805	-466559	-	AL834491 BC121067 BC121068 AK025263 NM_001242409 NM_022751	-769046	-	TSC_hg19_v1_chr18_-_29993196 D28353	-826271	-	BC130535 BC144178 BC144179 NM_001105528	200546	-	BC062719 BC091517 AK126038 NM_198995	201193	-	BX648108 TSC_hg19_v1_chr18_-_31158297	338763	-	BC021267|KLHL14|57565|kelch-like 14 (Drosophila)##AB037805|KLHL14|57565|kelch-like 14 (Drosophila)##NM_020805|KLHL14|57565|kelch-like 14 (Drosophila)##AL834491|FAM59A|64762|family with sequence similarity 59, member A##BC121067|FAM59A|64762|family with sequence similarity 59, member A##BC121068|FAM59A|64762|family with sequence similarity 59, member A##AK025263|FAM59A|64762|family with sequence similarity 59, member A##NM_001242409|FAM59A|64762|family with sequence similarity 59, member A##NM_022751|FAM59A|64762|family with sequence similarity 59, member A##BC130535|C18orf34|374864|chromosome 18 open reading frame 34##BC144178|C18orf34|374864|chromosome 18 open reading frame 34##BC144179|C18orf34|374864|chromosome 18 open reading frame 34##NM_001105528|C18orf34|374864|chromosome 18 open reading frame 34##BC062719|C18orf34|374864|chromosome 18 open reading frame 34##BC091517|C18orf34|374864|chromosome 18 open reading frame 34##AK126038|C18orf34|374864|chromosome 18 open reading frame 34##NM_198995|C18orf34|374864|chromosome 18 open reading frame 34	0.999707	0.0	denovo_WM_7:9:0.721
chr7	99623811	99623962	reg1002529.p1	8.834	+	BC112224 BC113697 CU692588 EU446909 HQ258578 TSC_hg19_v1_chr7_+_99621246	-2721	+	TSC_hg19_v1_chr7_+_99613225 AL833578 NM_003439 AF454940 AK054676 AY260738 BC022378 BX640646 AK091471 AX747005 AK074116	-10661	+	D90427 M76707 BC014470 AB463407 CU689768 X59766 BC005306 TSC_hg19_v1_chr7_-_99573655 BC005908 BC033830 NM_001185	-50201	-	TSC_hg19_v1_chr7_+_99627917 U09848	4052	+	AK075324 TSC_hg19_v1_chr7_+_99647394 AK292267 AK313884	23512	+	NM_145914 TSC_hg19_v1_chr7_+_99647416 CR749301 BC047309 AK301871	23544	+	BC112224|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC113697|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##EU446909|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##HQ258578|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AL833578|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##NM_003439|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AF454940|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK054676|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AY260738|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC022378|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BX640646|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK091471|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK074116|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##D90427|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##M76707|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC014470|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##X59766|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC005306|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC005908|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC033830|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##NM_001185|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##U09848|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK075324|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK292267|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK313884|ZSCAN21|7589|zinc finger and SCAN domain containing 21##NM_145914|ZSCAN21|7589|zinc finger and SCAN domain containing 21##CR749301|ZSCAN21|7589|zinc finger and SCAN domain containing 21##BC047309|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK301871|ZSCAN21|7589|zinc finger and SCAN domain containing 21	1.047154	0.0	
chr15	75389072	75389193	reg1002739.p1	8.832	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-73151	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-73204	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-101225	+	AK128205 TSC_hg19_v1_chr15_+_75491259	102114	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	105080	+	BC110367 TSC_hg19_v1_chr15_+_75494233	105101	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.993792	0.0	denovo_WM_7:-53:0.248	denovo_WM_7:-54:0.248	denovo_WM_7:-55:0.248	denovo_WM_7:-56:0.248
chr10	31007301	31007418	reg1002893.p2	8.831	+	AF139543 BC066294 NM_183058	-88724	-	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	-284238	+	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	-284420	+	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	281093	-	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	313462	-	TSC_hg19_v1_chr10_+_31607451 BX647794	600077	+	AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438##BX647794|ZEB1|6935|zinc finger E-box binding homeobox 1	1.816986	0.0	denovo_WM_7:1:0.377	denovo_WM_7:4:0.200	denovo_WM_7:16:0.246	denovo_WM_7:17:0.347
chr6	53053221	53053381	reg1001525.p2	8.831	+	BC096288 BC096289 AK309881 NM_003643 D88613	-39698	-	AF176704 NM_012347	-117531	+	TSC_hg19_v1_chr6_+_52930242 AF155114 AL137520 NM_033480	-122980	+	AK125098 TSC_hg19_v1_chr6_-_53213676	160338	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	160420	-	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	160560	-	BC096288|GCM1|8521|glial cells missing homolog 1 (Drosophila)##BC096289|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AK309881|GCM1|8521|glial cells missing homolog 1 (Drosophila)##NM_003643|GCM1|8521|glial cells missing homolog 1 (Drosophila)##D88613|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AF176704|FBXO9|26268|F-box protein 9##NM_012347|FBXO9|26268|F-box protein 9##AL137520|FBXO9|26268|F-box protein 9##NM_033480|FBXO9|26268|F-box protein 9##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5	0.802792	0.0	denovo_WM_7:13:0.442
chr2	206950568	206950731	reg1002473.p1	8.828	+	TSC_hg19_v1_chr2_+_206547371 AK290934	-403288	+	TSC_hg19_v1_chr2_+_206547224 AK130198 AL833606 NM_003872 NM_018534 NM_201264 NM_201266 NM_201267 NM_201279 BX537423	-403471	+	TSC_hg19_v1_chr2_+_205410716 AB073472 AB092439 AF428250 AF428251 AF466152	-1539930	+	TSC_hg19_v1_chr2_-_206950902 AK096585 NM_017759	262	-	AK295987 NM_001199984	73268	-	X61100 AK098395 BC018900 BC022368 TSC_hg19_v1_chr2_-_207024145 AK300585 BC030833 AK295705 AK295966 AK298320 BC004133 NM_001199981 NM_001199982 NM_001199983 NM_005006	73523	-	AK290934|NRP2|8828|neuropilin 2##AK130198|NRP2|8828|neuropilin 2##AL833606|NRP2|8828|neuropilin 2##NM_003872|NRP2|8828|neuropilin 2##NM_018534|NRP2|8828|neuropilin 2##NM_201264|NRP2|8828|neuropilin 2##NM_201266|NRP2|8828|neuropilin 2##NM_201267|NRP2|8828|neuropilin 2##NM_201279|NRP2|8828|neuropilin 2##BX537423|NRP2|8828|neuropilin 2##AB073472|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AB092439|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428250|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428251|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF466152|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AK096585|INO80D|54891|INO80 complex subunit D##NM_017759|INO80D|54891|INO80 complex subunit D##AK295987|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199984|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##X61100|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK098395|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC018900|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC022368|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK300585|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC030833|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295705|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295966|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK298320|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC004133|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199981|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199982|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199983|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_005006|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)	0.696736	0.0	denovo_WM_7:-5:0.617
chr9	135858023	135858170	reg1002576.p1	8.828	+	AY428733 NM_001135031 NM_004188	-3999	+	TSC_hg19_v1_chr9_-_135820004 AK303030 AK308412 AK297326 AF013168 BC108668 AK299654 BC070032 NM_000368 NM_001162426 NM_001162427	-38087	-	TSC_hg19_v1_chr9_-_135819985 BC121000 AB190910 BC047772	-38123	-	TSC_hg19_v1_chr9_+_135894809 BC070500	36711	+	NM_001122823 NM_012087 TSC_hg19_v1_chr9_+_135906094 AK225761 AK311481 AK055092 AF133124 BC011355 BC017337	48003	+	TSC_hg19_v1_chr9_+_135906386 AK000194 AK097295 AK293980 BC006409 AY007123 DQ892071 DQ895265 AJ420443 BC030157	48292	+	AY428733|GFI1B|8328|growth factor independent 1B transcription repressor##NM_001135031|GFI1B|8328|growth factor independent 1B transcription repressor##NM_004188|GFI1B|8328|growth factor independent 1B transcription repressor##AK303030|TSC1|7248|tuberous sclerosis 1##AK308412|TSC1|7248|tuberous sclerosis 1##AK297326|TSC1|7248|tuberous sclerosis 1##AF013168|TSC1|7248|tuberous sclerosis 1##BC108668|TSC1|7248|tuberous sclerosis 1##AK299654|TSC1|7248|tuberous sclerosis 1##BC070032|TSC1|7248|tuberous sclerosis 1##NM_000368|TSC1|7248|tuberous sclerosis 1##NM_001162426|TSC1|7248|tuberous sclerosis 1##NM_001162427|TSC1|7248|tuberous sclerosis 1##BC121000|TSC1|7248|tuberous sclerosis 1##AB190910|TSC1|7248|tuberous sclerosis 1##BC047772|TSC1|7248|tuberous sclerosis 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001122823|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##NM_012087|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK225761|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK311481|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK055092|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AF133124|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC011355|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC017337|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK000194|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK097295|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK293980|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC006409|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AY007123|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##DQ892071|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##DQ895265|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AJ420443|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC030157|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa	0.462629	0.0	denovo_WM_7:-1:0.286
chr20	30660309	30660459	reg1003596.p1	8.825	+	TSC_hg19_v1_chr20_+_30640055 NM_001172129 NM_001172130 NM_001172131 NM_001172132 NM_001172133 NM_002110 AK289896 AK225819 AK290928 AK298726 AK026432 BC108930 BC108931 BC113854 BC114463 AK314335 BC073748 BC094847 BC014435	-20338	+	NM_080625 AK057090 BC030254	-62136	+	AY534245 NM_001011718 TSC_hg19_v1_chr20_+_30555960	-104495	+	TSC_hg19_v1_chr20_+_30697308 NM_014742	36985	+	TSC_hg19_v1_chr20_+_30697532 AK126534 AK294980 AK296500 AK302439 BC021107 D87444	37157	+	TSC_hg19_v1_chr20_-_30795547 AK292450 BC000197 D83784 AF006005 BC023655 NM_002657	135091	-	NM_001172129|HCK|3055|hemopoietic cell kinase##NM_001172130|HCK|3055|hemopoietic cell kinase##NM_001172131|HCK|3055|hemopoietic cell kinase##NM_001172132|HCK|3055|hemopoietic cell kinase##NM_001172133|HCK|3055|hemopoietic cell kinase##NM_002110|HCK|3055|hemopoietic cell kinase##AK289896|HCK|3055|hemopoietic cell kinase##AK225819|HCK|3055|hemopoietic cell kinase##AK290928|HCK|3055|hemopoietic cell kinase##AK298726|HCK|3055|hemopoietic cell kinase##AK026432|HCK|3055|hemopoietic cell kinase##BC108930|HCK|3055|hemopoietic cell kinase##BC108931|HCK|3055|hemopoietic cell kinase##BC113854|HCK|3055|hemopoietic cell kinase##BC114463|HCK|3055|hemopoietic cell kinase##AK314335|HCK|3055|hemopoietic cell kinase##BC073748|HCK|3055|hemopoietic cell kinase##BC094847|HCK|3055|hemopoietic cell kinase##BC014435|HCK|3055|hemopoietic cell kinase##NM_080625|C20orf160|140706|chromosome 20 open reading frame 160##AK057090|C20orf160|140706|chromosome 20 open reading frame 160##BC030254|C20orf160|140706|chromosome 20 open reading frame 160##AY534245|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_001011718|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_014742|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK126534|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK294980|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK296500|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK302439|TM9SF4|9777|transmembrane 9 superfamily protein member 4##BC021107|TM9SF4|9777|transmembrane 9 superfamily protein member 4##D87444|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK292450|PLAGL2|5326|pleiomorphic adenoma gene-like 2##D83784|PLAGL2|5326|pleiomorphic adenoma gene-like 2##AF006005|PLAGL2|5326|pleiomorphic adenoma gene-like 2##BC023655|PLAGL2|5326|pleiomorphic adenoma gene-like 2##NM_002657|PLAGL2|5326|pleiomorphic adenoma gene-like 2	1.943026	0.0	denovo_WM_7:4:0.893	denovo_WM_7:-10:0.901
chr2	162016626	162016762	reg1003736.p1	8.825	+	NM_004180 NM_133484 U59863 U63830	-23229	+	BC018951 TSC_hg19_v1_chr2_-_161350319 NM_002897 NM_016836	-666377	-	CU676342 D28482 X77494 AK225887 L11289 TSC_hg19_v1_chr2_-_161350025 AK309949 BC012992 BC012993 AK297812	-666735	-	TSC_hg19_v1_chr2_+_162016938 AK313096 NM_001199135 BC067779	255	+	NM_005805 TSC_hg19_v1_chr2_+_162164936 BC066336	148168	+	TSC_hg19_v1_chr2_+_162164996 U86782	148329	+	NM_004180|TANK|10010|TRAF family member-associated NFKB activator##NM_133484|TANK|10010|TRAF family member-associated NFKB activator##U59863|TANK|10010|TRAF family member-associated NFKB activator##U63830|TANK|10010|TRAF family member-associated NFKB activator##BC018951|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_002897|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_016836|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##D28482|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##X77494|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK225887|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##L11289|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK309949|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC012992|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC012993|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK297812|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK313096|TANK|10010|TRAF family member-associated NFKB activator##NM_001199135|TANK|10010|TRAF family member-associated NFKB activator##BC067779|TANK|10010|TRAF family member-associated NFKB activator##NM_005805|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##BC066336|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##U86782|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	0.0	0.0	
chr9	5493773	5493921	reg1003295.p1	8.824	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-43340	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-55967	-	X00949 DQ893302 DQ896468 BC005956 NM_006911	-154039	-	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	16816	+	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	135280	+	BC036853 TSC_hg19_v1_chr9_-_5630098	136243	-	NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##X00949|RLN1|6013|relaxin 1##DQ893302|RLN1|6013|relaxin 1##DQ896468|RLN1|6013|relaxin 1##BC005956|RLN1|6013|relaxin 1##NM_006911|RLN1|6013|relaxin 1##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46	0.503562	0.0	denovo_WM_7:6:0.252
chr6	2079217	2079366	reg1002475.p2	8.823	+	TSC_hg19_v1_chr6_+_1611545 BC169307	-467717	+	BC134421 NM_001453	-468611	+	NM_001452 U13220 AB463646	-689166	+	AF040260 NM_001253846	96933	-	CR541929 CR541947 DQ892789 DQ896036 AF042377 TSC_hg19_v1_chr6_-_2245809 AK130651 AK313953 BC000117 NM_001500	166507	-	TSC_hg19_v1_chr6_+_2245995 AK023629	166722	+	BC169307|FOXC1|2296|forkhead box C1##BC134421|FOXC1|2296|forkhead box C1##NM_001453|FOXC1|2296|forkhead box C1##NM_001452|FOXF2|2295|forkhead box F2##U13220|FOXF2|2295|forkhead box F2##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541929|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541947|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ892789|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ896036|GMDS|2762|GDP-mannose 4,6-dehydratase##AF042377|GMDS|2762|GDP-mannose 4,6-dehydratase##AK130651|GMDS|2762|GDP-mannose 4,6-dehydratase##AK313953|GMDS|2762|GDP-mannose 4,6-dehydratase##BC000117|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001500|GMDS|2762|GDP-mannose 4,6-dehydratase	1.872193	0.0	denovo_WM_7:-18:0.439	denovo_WM_7:-19:0.429	denovo_WM_7:-34:0.917
chr6	88464747	88464884	reg1002988.p1	8.823	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-52827	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-52867	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-52906	-	BC029488 NM_030960 AF203447	292715	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	390221	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	410951	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.995245	0.0	
chr1	176176186	176176313	reg1003026.p1	8.821	+	AF508940 AY509921 TSC_hg19_v1_chr1_-_176176215	-84	-	AK295823 TSC_hg19_v1_chr1_-_175712727 NM_003285	-463539	-	D25539 BC032361 BC111699 BC050374 BC008952 BC020789 AL049799 AK292691 NM_001162895 NM_014656 AL049800 NM_001162893 NM_001162894	-1014219	-	TSC_hg19_v1_chr1_-_176176313 BC020845 AK314750	69	-	TSC_hg19_v1_chr1_-_176176372 BC094728 NM_001001740 NM_022457	120	-	AF527539 TSC_hg19_v1_chr1_-_176176377	127	-	AF508940|RFWD2|64326|ring finger and WD repeat domain 2##AY509921|RFWD2|64326|ring finger and WD repeat domain 2##AK295823|TNR|7143|tenascin R (restrictin, janusin)##NM_003285|TNR|7143|tenascin R (restrictin, janusin)##D25539|KIAA0040|9674|KIAA0040##BC032361|KIAA0040|9674|KIAA0040##BC111699|KIAA0040|9674|KIAA0040##BC050374|KIAA0040|9674|KIAA0040##BC020789|KIAA0040|9674|KIAA0040##AL049799|KIAA0040|9674|KIAA0040##AK292691|KIAA0040|9674|KIAA0040##NM_001162895|KIAA0040|9674|KIAA0040##NM_014656|KIAA0040|9674|KIAA0040##AL049800|KIAA0040|9674|KIAA0040##NM_001162893|KIAA0040|9674|KIAA0040##NM_001162894|KIAA0040|9674|KIAA0040##BC020845|RFWD2|64326|ring finger and WD repeat domain 2##AK314750|RFWD2|64326|ring finger and WD repeat domain 2##BC094728|RFWD2|64326|ring finger and WD repeat domain 2##NM_001001740|RFWD2|64326|ring finger and WD repeat domain 2##NM_022457|RFWD2|64326|ring finger and WD repeat domain 2##AF527539|RFWD2|64326|ring finger and WD repeat domain 2	0.0	0.0	
chr15	85201736	85201910	reg1002624.p1	8.821	+	BC007407 BC007431 NM_021077 NM_205858	-26	-	M21551 AL110112 BC008603 TSC_hg19_v1_chr15_-_85201431	-377	-	TSC_hg19_v1_chr15_-_85197515 AK225068 NM_032856 BC050648 BC063392	-4297	-	AF090315 AF108945 CR457127 DQ891826 AF087906 AK300693 TSC_hg19_v1_chr15_-_85259371 AK223224 BC000359 AF061737	57523	-	TSC_hg19_v1_chr15_-_85259675 BC014508 NM_014300 AK314146	57858	-	TSC_hg19_v1_chr15_+_85291590 D86966	89759	+	BC007407|NMB|4828|neuromedin B##BC007431|NMB|4828|neuromedin B##NM_021077|NMB|4828|neuromedin B##NM_205858|NMB|4828|neuromedin B##M21551|NMB|4828|neuromedin B##AL110112|NMB|4828|neuromedin B##BC008603|NMB|4828|neuromedin B##AK225068|WDR73|84942|WD repeat domain 73##NM_032856|WDR73|84942|WD repeat domain 73##BC050648|WDR73|84942|WD repeat domain 73##BC063392|WDR73|84942|WD repeat domain 73##AF090315|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF108945|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##CR457127|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##DQ891826|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF087906|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK300693|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK223224|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC000359|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF061737|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC014508|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##NM_014300|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK314146|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##D86966|ZNF592|9640|zinc finger protein 592	1.180049	0.0	
chr19	36390472	36390619	reg1003822.p1	8.820	+	TSC_hg19_v1_chr19_+_36359436 NM_001024807 NM_005166 BC013850 AK092376 BC012889 AK312292 BC032983 U48437 AB527091 CU680434 DQ891341 DQ894523	-31081	+	BC007312 NM_032123 NM_199179 NM_199180 AY358742 AL136654 AB593116	-42718	+	NM_004646	-47651	-	TSC_hg19_v1_chr19_-_36391448 AF385434 NM_139239	954	-	AL050163 BC046348 NM_001007469 NM_014266 TSC_hg19_v1_chr19_+_36393430 BC065224 BC035931 AF072844 AF122904 AY359058 AF285447 AB590940	2892	+	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	8605	-	NM_001024807|APLP1|333|amyloid beta (A4) precursor-like protein 1##NM_005166|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC013850|APLP1|333|amyloid beta (A4) precursor-like protein 1##AK092376|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC012889|APLP1|333|amyloid beta (A4) precursor-like protein 1##AK312292|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC032983|APLP1|333|amyloid beta (A4) precursor-like protein 1##U48437|APLP1|333|amyloid beta (A4) precursor-like protein 1##DQ891341|APLP1|333|amyloid beta (A4) precursor-like protein 1##DQ894523|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC007312|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_032123|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_199179|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_199180|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AY358742|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AL136654|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AB593116|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_004646|NPHS1|4868|nephrosis 1, congenital, Finnish type (nephrin)##AF385434|NFKBID|84807|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta##NM_139239|NFKBID|84807|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta##AL050163|HCST|10870|hematopoietic cell signal transducer##BC046348|HCST|10870|hematopoietic cell signal transducer##NM_001007469|HCST|10870|hematopoietic cell signal transducer##NM_014266|HCST|10870|hematopoietic cell signal transducer##BC065224|HCST|10870|hematopoietic cell signal transducer##BC035931|HCST|10870|hematopoietic cell signal transducer##AF072844|HCST|10870|hematopoietic cell signal transducer##AF122904|HCST|10870|hematopoietic cell signal transducer##AY359058|HCST|10870|hematopoietic cell signal transducer##AF285447|HCST|10870|hematopoietic cell signal transducer##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein	0.999196	0.0	
chr20	271384	271481	reg1000725.p2	8.820	+	AK302223 TSC_hg19_v1_chr20_-_271367 BC134417 BC137450 BC144648 BC144649 AK097394 NM_080571 NM_153269	-68	-	TSC_hg19_v1_chr20_-_271080 AK091924 AX747257 AK304526 BX640715 BC051762	-358	-	AY358708 EF426755 NM_207469 BC137292 BC137293 AF525932 AY621329	-33035	+	TSC_hg19_v1_chr20_+_278213 BC069238 NM_033089 AK025768 BC107584 BC036469	6777	+	TSC_hg19_v1_chr20_+_306226 BC067361 NM_006943 U35612 BC028103	34804	+	TSC_hg19_v1_chr20_+_327371 NM_024958 AK290527	55973	+	AK302223|C20orf96|140680|chromosome 20 open reading frame 96##BC134417|C20orf96|140680|chromosome 20 open reading frame 96##BC137450|C20orf96|140680|chromosome 20 open reading frame 96##BC144648|C20orf96|140680|chromosome 20 open reading frame 96##BC144649|C20orf96|140680|chromosome 20 open reading frame 96##AK097394|C20orf96|140680|chromosome 20 open reading frame 96##NM_080571|C20orf96|140680|chromosome 20 open reading frame 96##NM_153269|C20orf96|140680|chromosome 20 open reading frame 96##AK091924|C20orf96|140680|chromosome 20 open reading frame 96##AK304526|C20orf96|140680|chromosome 20 open reading frame 96##BX640715|C20orf96|140680|chromosome 20 open reading frame 96##BC051762|C20orf96|140680|chromosome 20 open reading frame 96##AY358708|DEFB132|400830|defensin, beta 132##EF426755|DEFB132|400830|defensin, beta 132##NM_207469|DEFB132|400830|defensin, beta 132##BC137292|DEFB132|400830|defensin, beta 132##BC137293|DEFB132|400830|defensin, beta 132##AF525932|DEFB132|400830|defensin, beta 132##AY621329|DEFB132|400830|defensin, beta 132##BC069238|ZCCHC3|85364|zinc finger, CCHC domain containing 3##NM_033089|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK025768|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC107584|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC036469|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC067361|SOX12|6666|SRY (sex determining region Y)-box 12##NM_006943|SOX12|6666|SRY (sex determining region Y)-box 12##U35612|SOX12|6666|SRY (sex determining region Y)-box 12##BC028103|SOX12|6666|SRY (sex determining region Y)-box 12##NM_024958|NRSN2|80023|neurensin 2##AK290527|NRSN2|80023|neurensin 2	0.0	0.0	
chr10	31670898	31671074	reg1002513.p1	8.818	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-60897	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-62853	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-63029	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	546738	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	546799	-	TSC_hg19_v1_chr10_-_32344938 AB462413	673946	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	1.974848	0.0	denovo_WM_7:-26:0.663	denovo_WM_7:-27:0.214	denovo_WM_7:-41:0.367	denovo_WM_7:-42:0.581
chr1	150159642	150159784	reg1000864.p3	8.818	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-37275	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-37409	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-37581	+	AK095228 NM_001136479	47312	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	48554	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	48738	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.993863	0.970098	CTCF.p2:32:0.970	denovo_WM_7:-35:0.378	denovo_WM_7:-36:0.305
chr3	107528999	107529131	reg1001365.p1	8.818	+	NM_001142568 NM_020235 AF283775 AF454941 TSC_hg19_v1_chr3_+_107241834 AF161457 AK314434 AK057010 AK291757 AF276949 BC131718	-287216	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	-432755	+	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	-569473	+	AB590342 BT006907 DQ890756 DQ891811 DQ893920 TSC_hg19_v1_chr3_-_107809906 BC010016 BC012884 X69398 BC037306 AK289813 Z25521 NM_001777 NM_198793	280808	-	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	412227	-	AK315109 AK296644 TSC_hg19_v1_chr3_+_108015400 AK000692	486336	+	NM_001142568|BBX|56987|bobby sox homolog (Drosophila)##NM_020235|BBX|56987|bobby sox homolog (Drosophila)##AF283775|BBX|56987|bobby sox homolog (Drosophila)##AF454941|BBX|56987|bobby sox homolog (Drosophila)##AF161457|BBX|56987|bobby sox homolog (Drosophila)##AK314434|BBX|56987|bobby sox homolog (Drosophila)##AK057010|BBX|56987|bobby sox homolog (Drosophila)##AK291757|BBX|56987|bobby sox homolog (Drosophila)##AF276949|BBX|56987|bobby sox homolog (Drosophila)##BC131718|BBX|56987|bobby sox homolog (Drosophila)##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##BT006907|CD47|961|CD47 molecule##DQ890756|CD47|961|CD47 molecule##DQ891811|CD47|961|CD47 molecule##DQ893920|CD47|961|CD47 molecule##BC010016|CD47|961|CD47 molecule##BC012884|CD47|961|CD47 molecule##X69398|CD47|961|CD47 molecule##BC037306|CD47|961|CD47 molecule##AK289813|CD47|961|CD47 molecule##Z25521|CD47|961|CD47 molecule##NM_001777|CD47|961|CD47 molecule##NM_198793|CD47|961|CD47 molecule##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK315109|HHLA2|11148|HERV-H LTR-associating 2##AK296644|HHLA2|11148|HERV-H LTR-associating 2##AK000692|HHLA2|11148|HERV-H LTR-associating 2	0.998386	0.0	denovo_WM_7:0:0.229	denovo_WM_7:1:0.229	denovo_WM_7:2:0.229	denovo_WM_7:3:0.229
chr12	12849193	12849367	reg1000618.p1	8.816	+	AK096388 NM_006143	-160	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-84397	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-84485	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	20846	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	29576	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	89297	+	AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1	1.990365	0.0	denovo_WM_7:1:0.237	denovo_WM_7:2:0.203	denovo_WM_7:21:0.209	denovo_WM_7:22:0.243
chr4	54357344	54357493	reg1003434.p1	8.815	+	TSC_hg19_v1_chr4_+_54292052 BC026724	-65347	+	TSC_hg19_v1_chr4_+_54243915 BC024016 BC052959 AB463043 AM392758 AY229892 AK300398 AK308145	-113459	+	TSC_hg19_v1_chr4_+_54243829 BC017724 AL136910 AY366510	-113554	+	AY358326 TSC_hg19_v1_chr4_-_54424350 BC034737	66932	-	AF237782 TSC_hg19_v1_chr4_-_54424379 AK294611	66960	-	TSC_hg19_v1_chr4_-_54424402 NM_032622	67000	-	BC026724|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##BC024016|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##BC052959|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AM392758|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AK300398|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AK308145|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##BC017724|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AL136910|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AY366510|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AY358326|LNX1|84708|ligand of numb-protein X 1##BC034737|LNX1|84708|ligand of numb-protein X 1##AF237782|LNX1|84708|ligand of numb-protein X 1##AK294611|LNX1|84708|ligand of numb-protein X 1##NM_032622|LNX1|84708|ligand of numb-protein X 1	0.999592	0.376095	denovo_WM_7:29:0.610	CTCF.p2:-45:0.376
chr18	12883984	12884164	reg1000107.p2	8.814	+	TSC_hg19_v1_chr18_+_12703040 NM_020232 AK225882 AF168712 AK057005 BC013356 CU680576	-181038	+	TSC_hg19_v1_chr18_-_12702776 AK298223	-181310	-	TSC_hg19_v1_chr18_-_12702689 AK022604 BC033026 AL833727 BC026307 NM_024899 AK303117	-181399	-	CU678897 AB590517 BC008244 TSC_hg19_v1_chr18_-_12884237 M25393 AK225706 AK290649 AK292570 BC016727 NM_001207013 NM_002828 NM_080422 NM_080423	162	-	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	63911	+	TSC_hg19_v1_chr18_+_12948009 AK314403	63932	+	NM_020232|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK225882|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF168712|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK057005|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##BC013356|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK298223|CEP76|79959|centrosomal protein 76kDa##AK022604|CEP76|79959|centrosomal protein 76kDa##BC033026|CEP76|79959|centrosomal protein 76kDa##AL833727|CEP76|79959|centrosomal protein 76kDa##BC026307|CEP76|79959|centrosomal protein 76kDa##NM_024899|CEP76|79959|centrosomal protein 76kDa##AK303117|CEP76|79959|centrosomal protein 76kDa##BC008244|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##M25393|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK225706|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK290649|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK292570|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##BC016727|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001207013|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_002828|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080422|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080423|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)	0.0	0.0	
chr3	189676400	189676523	reg1003199.p2	8.812	+	AK304127 NM_001114980 NM_001114981 NM_001114982 GQ202689 GQ202690 AF091627 AB010153 AB042841 AF075429 AF075431 AF075433	-168943	+	BC039815 NM_001114978 NM_001114979 NM_003722 AB016072 AB016073 AF116771 Y16961 CU691766 EU446669	-327202	+	AK125682 NM_198485 BC101550 BC101552	-786650	+	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	162234	-	NM_018192	162446	-	NM_001134418	163764	-	AK304127|TP63|8626|tumor protein p63##NM_001114980|TP63|8626|tumor protein p63##NM_001114981|TP63|8626|tumor protein p63##NM_001114982|TP63|8626|tumor protein p63##GQ202689|TP63|8626|tumor protein p63##GQ202690|TP63|8626|tumor protein p63##AF091627|TP63|8626|tumor protein p63##AB010153|TP63|8626|tumor protein p63##AB042841|TP63|8626|tumor protein p63##AF075429|TP63|8626|tumor protein p63##AF075431|TP63|8626|tumor protein p63##AF075433|TP63|8626|tumor protein p63##BC039815|TP63|8626|tumor protein p63##NM_001114978|TP63|8626|tumor protein p63##NM_001114979|TP63|8626|tumor protein p63##NM_003722|TP63|8626|tumor protein p63##AB016072|TP63|8626|tumor protein p63##AB016073|TP63|8626|tumor protein p63##AF116771|TP63|8626|tumor protein p63##Y16961|TP63|8626|tumor protein p63##EU446669|TP63|8626|tumor protein p63##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1##NM_001134418|LEPREL1|55214|leprecan-like 1	0.994586	0.993072	CTCF.p2:7:0.993
chr7	8168909	8169089	reg1001948.p1	8.810	+	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	-160566	+	BC009868 NM_002947	-410762	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-488626	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	132717	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	132792	-	TSC_hg19_v1_chr7_-_8302174 U38260 L01100 BC008640 BC005922 NM_004968	133174	-	NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa##U38260|ICA1|3382|islet cell autoantigen 1, 69kDa##L01100|ICA1|3382|islet cell autoantigen 1, 69kDa##BC008640|ICA1|3382|islet cell autoantigen 1, 69kDa##BC005922|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_004968|ICA1|3382|islet cell autoantigen 1, 69kDa	1.345341	0.0	denovo_WM_7:13:0.304	denovo_WM_7:14:0.622	denovo_WM_7:-95:0.419
chr19	8362353	8362486	reg1002938.p3	8.809	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-88171	+	AB384635 AB053450 BC153882 NM_032447	-150044	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-244472	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	10790	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	23838	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	23867	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.196204	0.0	
chr22	50228389	50228506	reg1000950.p2	8.809	+	TSC_hg19_v1_chr22_-_50221517 AK304776	-6966	-	AK292428 TSC_hg19_v1_chr22_-_50221332 BC030007 BC047508	-7181	-	AF005067 NM_014577	-9996	-	TSC_hg19_v1_chr22_+_50247506 NM_014838	19046	+	AB014537 BC167155 TSC_hg19_v1_chr22_+_50247533	19085	+	TSC_hg19_v1_chr22_-_50312087 BC001729 AJ290427 AJ303120 BC098562 AF318343	83568	-	AK304776|BRD1|23774|bromodomain containing 1##AK292428|BRD1|23774|bromodomain containing 1##BC030007|BRD1|23774|bromodomain containing 1##BC047508|BRD1|23774|bromodomain containing 1##AF005067|BRD1|23774|bromodomain containing 1##NM_014577|BRD1|23774|bromodomain containing 1##NM_014838|ZBED4|9889|zinc finger, BED-type containing 4##AB014537|ZBED4|9889|zinc finger, BED-type containing 4##BC167155|ZBED4|9889|zinc finger, BED-type containing 4##BC001729|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ290427|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ303120|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##BC098562|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AF318343|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)	0.999486	0.0	denovo_WM_7:15:0.964
chr11	73231853	73232033	reg1003254.p2	8.808	+	TSC_hg19_v1_chr11_+_73087683 AF319553 NM_032871	-144252	+	TSC_hg19_v1_chr11_+_73087471 AK027899 NM_152222 BC051810 BC017279	-144506	+	TSC_hg19_v1_chr11_-_73020422 AK300095	-211520	-	D87470 TSC_hg19_v1_chr11_-_73309158 AK292054 EF197985 BC052341 EF363480 NM_015159	77255	-	AF101054 NM_001130033 NM_021200 U89715	125279	+	NM_001130034 NM_001130035 BC008075 AB209716 AK289620 TSC_hg19_v1_chr11_+_73358695 AK296033 AK301299 AF093249 AF100612 AK289909 AK311158	126720	+	AF319553|RELT|84957|RELT tumor necrosis factor receptor##NM_032871|RELT|84957|RELT tumor necrosis factor receptor##AK027899|RELT|84957|RELT tumor necrosis factor receptor##NM_152222|RELT|84957|RELT tumor necrosis factor receptor##BC051810|RELT|84957|RELT tumor necrosis factor receptor##BC017279|RELT|84957|RELT tumor necrosis factor receptor##AK300095|LOC100287837|100287837|uncharacterized LOC100287837##D87470|FAM168A|23201|family with sequence similarity 168, member A##AK292054|FAM168A|23201|family with sequence similarity 168, member A##EF197985|FAM168A|23201|family with sequence similarity 168, member A##BC052341|FAM168A|23201|family with sequence similarity 168, member A##EF363480|FAM168A|23201|family with sequence similarity 168, member A##NM_015159|FAM168A|23201|family with sequence similarity 168, member A##AF101054|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_021200|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##U89715|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130034|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130035|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##BC008075|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AB209716|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289620|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK296033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK301299|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF093249|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF100612|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289909|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK311158|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1	1.900605	0.0	denovo_WM_7:17:0.977	denovo_WM_7:-68:0.214	denovo_WM_7:-69:0.413	denovo_WM_7:-70:0.297
chr17	76774673	76774847	reg1002902.p3	8.808	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-41762	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-55009	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-55113	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	3593	-	BC071582 TSC_hg19_v1_chr17_-_76836610	61890	-	TSC_hg19_v1_chr17_-_76836843 AK225426	62023	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	1.804973	0.0	denovo_WM_7:-14:0.541	denovo_WM_7:-32:0.281
chrX	80377143	80377265	reg1003369.p2	8.808	+	BC111490 AY497046 AY497048 AY497049 AY497050 AY497051 AY497052 AY497053 AY497054 AY497055 NM_153252	-311997	-	BX537938 NM_152630 BC030784 AK313875 BC028710 BC034979	-701242	+	AK128147 NM_001170574	-786202	+	NM_003022 AK024892 AK309350 BC103762 TSC_hg19_v1_chrX_+_80457495	80199	+	AK094058 AX748432 NM_030763	80236	-	TSC_hg19_v1_chrX_+_80457572 AK309351	80372	+	BC111490|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497046|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497048|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497049|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497050|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497051|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497052|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497053|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497054|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497055|BRWD3|254065|bromodomain and WD repeat domain containing 3##NM_153252|BRWD3|254065|bromodomain and WD repeat domain containing 3##BX537938|FAM46D|169966|family with sequence similarity 46, member D##NM_152630|FAM46D|169966|family with sequence similarity 46, member D##BC030784|FAM46D|169966|family with sequence similarity 46, member D##AK313875|FAM46D|169966|family with sequence similarity 46, member D##BC028710|FAM46D|169966|family with sequence similarity 46, member D##BC034979|FAM46D|169966|family with sequence similarity 46, member D##AK128147|FAM46D|169966|family with sequence similarity 46, member D##NM_001170574|FAM46D|169966|family with sequence similarity 46, member D##NM_003022|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK024892|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309350|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC103762|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like	0.936711	0.0	denovo_WM_7:-23:0.826
chr21	43285740	43285896	reg1003296.p2	8.807	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-98551	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-98596	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-405735	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	13680	-	BC062323 AL833323 NM_199050	60971	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	88265	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	0.0	0.0	
chr11	112151465	112151602	reg1002666.p1	8.806	+	AY364435 NM_001145024	-19951	-	TSC_hg19_v1_chr11_+_112097100 NM_000317 BC018029 D17400 AK310768 BC009686 AK307133 M97655 AM392676 AM393300 AM393668 DQ890961 DQ894133	-54406	+	NM_001037290 AK027801 AK297853 AB096252	-104428	+	NM_000615 NM_001076682 NM_001242607 NM_001242608 NM_181351 TSC_hg19_v1_chr11_+_112831996 AK314589	680454	+	AB209443 TSC_hg19_v1_chr11_+_112832141 AF005070 BC047244 S71824 BC029119	680598	+	X16841 TSC_hg19_v1_chr11_+_112832212	680673	+	AY364435|C11orf34|349633|chromosome 11 open reading frame 34##NM_001145024|C11orf34|349633|chromosome 11 open reading frame 34##NM_000317|PTS|5805|6-pyruvoyltetrahydropterin synthase##BC018029|PTS|5805|6-pyruvoyltetrahydropterin synthase##D17400|PTS|5805|6-pyruvoyltetrahydropterin synthase##AK310768|PTS|5805|6-pyruvoyltetrahydropterin synthase##BC009686|PTS|5805|6-pyruvoyltetrahydropterin synthase##AK307133|PTS|5805|6-pyruvoyltetrahydropterin synthase##M97655|PTS|5805|6-pyruvoyltetrahydropterin synthase##AM392676|PTS|5805|6-pyruvoyltetrahydropterin synthase##AM393300|PTS|5805|6-pyruvoyltetrahydropterin synthase##AM393668|PTS|5805|6-pyruvoyltetrahydropterin synthase##DQ890961|PTS|5805|6-pyruvoyltetrahydropterin synthase##DQ894133|PTS|5805|6-pyruvoyltetrahydropterin synthase##NM_001037290|BCO2|83875|beta-carotene oxygenase 2##AK027801|BCO2|83875|beta-carotene oxygenase 2##AK297853|BCO2|83875|beta-carotene oxygenase 2##AB096252|BCO2|83875|beta-carotene oxygenase 2##NM_000615|NCAM1|4684|neural cell adhesion molecule 1##NM_001076682|NCAM1|4684|neural cell adhesion molecule 1##NM_001242607|NCAM1|4684|neural cell adhesion molecule 1##NM_001242608|NCAM1|4684|neural cell adhesion molecule 1##NM_181351|NCAM1|4684|neural cell adhesion molecule 1##AK314589|NCAM1|4684|neural cell adhesion molecule 1##AB209443|NCAM1|4684|neural cell adhesion molecule 1##AF005070|NCAM1|4684|neural cell adhesion molecule 1##BC047244|NCAM1|4684|neural cell adhesion molecule 1##S71824|NCAM1|4684|neural cell adhesion molecule 1##BC029119|NCAM1|4684|neural cell adhesion molecule 1##X16841|NCAM1|4684|neural cell adhesion molecule 1	0.99772	0.922667	CTCF.p2:-70:0.923
chr12	42878948	42879104	reg1002963.p1	8.805	+	TSC_hg19_v1_chr12_-_42877811 NM_001144882 NM_001144883	-1227	-	AK122881 TSC_hg19_v1_chr12_-_42877772	-1268	-	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	-1610	-	BC114939 BC114940 AF399844 AF543759 AF543760 AK056499 TSC_hg19_v1_chr12_-_42983549 NM_153026	104466	-	AF488804 AJ515153 AJ515154 NM_025003	1066697	-	AL136759 TSC_hg19_v1_chr12_-_44152566 BX647494 NM_001098615 AK097331 AK225903 NM_001098614 BC020781 CR627435 BC068502 AK092030 AX747323 NM_031292	1273549	-	NM_001144882|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144883|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114939|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114940|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF399844|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543759|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543760|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK056499|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_153026|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF488804|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AJ515153|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AJ515154|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##NM_025003|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AL136759|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BX647494|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_001098615|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK097331|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK225903|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_001098614|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BC020781|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##CR627435|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BC068502|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK092030|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_031292|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like	1.957956	0.0	denovo_WM_7:23:0.959	denovo_WM_7:38:0.964
chr7	21979504	21979684	reg1002873.p2	8.800	+	AJ320497 NM_003777	-396762	+	AB591008 TSC_hg19_v1_chr7_+_21468356	-511270	+	TSC_hg19_v1_chr7_+_21467717 AK289728 AK296749 NM_003112 X68561 BC109300 BC109301	-511775	+	AB463479 AY161168 AY161169 CU691768 CU692942 BC009352 TSC_hg19_v1_chr7_-_21985500 AK095965 BC025242 BC032576 AK300781 BC039823 AK022955 AK292490 NM_001127370 NM_001127371 NM_018719	5888	-	AL833195 NM_012294	416927	-	BC066301 TSC_hg19_v1_chr7_-_22539806 AK308991 NM_001164460 NM_207342	560253	-	AJ320497|DNAH11|8701|dynein, axonemal, heavy chain 11##NM_003777|DNAH11|8701|dynein, axonemal, heavy chain 11##AK289728|SP4|6671|Sp4 transcription factor##AK296749|SP4|6671|Sp4 transcription factor##NM_003112|SP4|6671|Sp4 transcription factor##X68561|SP4|6671|Sp4 transcription factor##BC109300|SP4|6671|Sp4 transcription factor##BC109301|SP4|6671|Sp4 transcription factor##AY161168|CDCA7L|55536|cell division cycle associated 7-like##AY161169|CDCA7L|55536|cell division cycle associated 7-like##BC009352|CDCA7L|55536|cell division cycle associated 7-like##AK095965|CDCA7L|55536|cell division cycle associated 7-like##BC025242|CDCA7L|55536|cell division cycle associated 7-like##BC032576|CDCA7L|55536|cell division cycle associated 7-like##AK300781|CDCA7L|55536|cell division cycle associated 7-like##BC039823|CDCA7L|55536|cell division cycle associated 7-like##AK022955|CDCA7L|55536|cell division cycle associated 7-like##AK292490|CDCA7L|55536|cell division cycle associated 7-like##NM_001127370|CDCA7L|55536|cell division cycle associated 7-like##NM_001127371|CDCA7L|55536|cell division cycle associated 7-like##NM_018719|CDCA7L|55536|cell division cycle associated 7-like##AL833195|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##NM_012294|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##BC066301|STEAP1B|256227|STEAP family member 1B##AK308991|STEAP1B|256227|STEAP family member 1B##NM_001164460|STEAP1B|256227|STEAP family member 1B##NM_207342|STEAP1B|256227|STEAP family member 1B	0.998718	0.0	
chr1	153318887	153319043	reg1003011.p1	8.799	+	BC128114 BC128115 BC069741 BC069798 BC069801 AY035376 NM_052891	-35786	-	BC108290 NM_000427	-86787	+	NM_001195571	-128906	+	AY035377 NM_020393 AF242518	2067	-	AK311882 NM_002965 X06233 TSC_hg19_v1_chr1_+_153330329 BC047681 AF086362	11373	+	X97859 BC070294 D83664 NM_005621	29100	-	BC128114|PGLYRP3|114771|peptidoglycan recognition protein 3##BC128115|PGLYRP3|114771|peptidoglycan recognition protein 3##BC069741|PGLYRP3|114771|peptidoglycan recognition protein 3##BC069798|PGLYRP3|114771|peptidoglycan recognition protein 3##BC069801|PGLYRP3|114771|peptidoglycan recognition protein 3##AY035376|PGLYRP3|114771|peptidoglycan recognition protein 3##NM_052891|PGLYRP3|114771|peptidoglycan recognition protein 3##BC108290|LOR|4014|loricrin##NM_000427|LOR|4014|loricrin##NM_001195571|PRR9|574414|proline rich 9##AY035377|PGLYRP4|57115|peptidoglycan recognition protein 4##NM_020393|PGLYRP4|57115|peptidoglycan recognition protein 4##AF242518|PGLYRP4|57115|peptidoglycan recognition protein 4##AK311882|S100A9|6280|S100 calcium binding protein A9##NM_002965|S100A9|6280|S100 calcium binding protein A9##X06233|S100A9|6280|S100 calcium binding protein A9##BC047681|S100A9|6280|S100 calcium binding protein A9##AF086362|S100A9|6280|S100 calcium binding protein A9##X97859|S100A12|6283|S100 calcium binding protein A12##BC070294|S100A12|6283|S100 calcium binding protein A12##D83664|S100A12|6283|S100 calcium binding protein A12##NM_005621|S100A12|6283|S100 calcium binding protein A12	0.917246	0.0	denovo_WM_7:-2:0.240	denovo_WM_7:-5:0.479
chr9	102985051	102985185	reg1003048.p1	8.799	+	TSC_hg19_v1_chr9_+_102861574 BC006370 BC111761 BC112351	-123497	+	AF039217 TSC_hg19_v1_chr9_+_102861540 BC063847 AK304851 BC072429 BC110864	-123578	+	TSC_hg19_v1_chr9_+_102861524 BC041665 NM_014425 NM_183245 AK312795	-123637	+	AK302619 NM_001161584	129734	-	BC030652 TSC_hg19_v1_chr9_-_103115211 AK304869 AK000294 AB060968 AK303662 AK298916 NM_017746	130067	-	BC042955 TSC_hg19_v1_chr9_+_103115352 AK056351	130242	+	BC006370|INVS|27130|inversin##BC111761|INVS|27130|inversin##BC112351|INVS|27130|inversin##AF039217|INVS|27130|inversin##BC063847|INVS|27130|inversin##AK304851|INVS|27130|inversin##BC072429|INVS|27130|inversin##BC041665|INVS|27130|inversin##NM_014425|INVS|27130|inversin##NM_183245|INVS|27130|inversin##AK312795|INVS|27130|inversin##AK302619|TEX10|54881|testis expressed 10##NM_001161584|TEX10|54881|testis expressed 10##BC030652|TEX10|54881|testis expressed 10##AK304869|TEX10|54881|testis expressed 10##AK000294|TEX10|54881|testis expressed 10##AB060968|TEX10|54881|testis expressed 10##AK303662|TEX10|54881|testis expressed 10##AK298916|TEX10|54881|testis expressed 10##NM_017746|TEX10|54881|testis expressed 10	0.999309	0.915043	denovo_WM_7:-6:0.307	denovo_WM_7:-7:0.307	denovo_WM_7:-8:0.307	CTCF.p2:43:0.915
chr18	52708727	52708843	reg1002377.p1	8.796	+	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-82098	-	AK058097 NM_001143829	-83507	-	TSC_hg19_v1_chr18_+_52495674 AF329499 NM_004163 BC027474 U57093	-213047	+	FR748222 NM_001243236	260997	-	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	280217	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	360053	-	AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##AK058097|CCDC68|80323|coiled-coil domain containing 68##NM_001143829|CCDC68|80323|coiled-coil domain containing 68##AF329499|RAB27B|5874|RAB27B, member RAS oncogene family##NM_004163|RAB27B|5874|RAB27B, member RAS oncogene family##BC027474|RAB27B|5874|RAB27B, member RAS oncogene family##U57093|RAB27B|5874|RAB27B, member RAS oncogene family##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4	0.996868	0.0	denovo_WM_7:-6:0.793
chr19	54960125	54960246	reg1003252.p1	8.796	+	NM_052925	-121	+	AB162930 TSC_hg19_v1_chr19_+_54926723	-33463	+	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	-33534	+	TSC_hg19_v1_chr19_+_54960396 AL834532 BC028048	221	+	AL833879 TSC_hg19_v1_chr19_+_54965768	5527	+	BC015921 NM_198988	14708	-	NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AL834532|LENG8|114823|leukocyte receptor cluster (LRC) member 8##BC028048|LENG8|114823|leukocyte receptor cluster (LRC) member 8##BC015921|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_198988|LENG9|94059|leukocyte receptor cluster (LRC) member 9	0.216624	0.0	denovo_WM_7:-28:0.217
chr8	95958878	95959058	reg1000812.p1	8.795	+	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-51516	-	TSC_hg19_v1_chr8_+_95835588 BC136754 BC144396 BC144397	-123268	+	TSC_hg19_v1_chr8_+_95835522 BC099915 AB161944 NM_017864	-123420	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	2689	-	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	78336	+	TSC_hg19_v1_chr8_+_96145948 NM_024613	186977	+	BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##BC136754|INTS8|55656|integrator complex subunit 8##BC144396|INTS8|55656|integrator complex subunit 8##BC144397|INTS8|55656|integrator complex subunit 8##BC099915|INTS8|55656|integrator complex subunit 8##AB161944|INTS8|55656|integrator complex subunit 8##NM_017864|INTS8|55656|integrator complex subunit 8##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.991867	0.0	
chr16	10608622	10608770	reg1002738.p1	8.792	+	NM_024997 BC137079 BC144468	-85956	+	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	-128779	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-332019	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	65794	-	HQ258441 BC130336 BC130338 AK057433 NM_144674	180069	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	229008	+	NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1	0.996615	0.992417	denovo_WM_7:12:0.928	CTCF.p2:-56:0.992
chr6_qbl_hap6	2881886	2882014	reg1002318.p1	8.792	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997902	0.0	denovo_WM_7:28:0.298	denovo_WM_7:29:0.298	denovo_WM_7:30:0.298
chr9	132565212	132565392	reg1002056.p2	8.791	+	AB590756 AF027740 AF217965 AF010316 TSC_hg19_v1_chr9_-_132515313 AK311947 BC008280 NM_004878	-49986	-	TSC_hg19_v1_chr9_+_132428029 AF061970	-137236	+	BC014645 NM_016307 TSC_hg19_v1_chr9_+_132427927	-137379	+	TSC_hg19_v1_chr9_+_132565426 AF317129 NM_014506	118	+	TSC_hg19_v1_chr9_+_132565465 BC015578 DQ893204 DQ893205 DQ893696 DQ896532 DQ896533 DQ896867	171	+	BT006931 AB590352 DQ892657 DQ895897 TSC_hg19_v1_chr9_-_132586385 BC014484 AK314505 AK075343	21078	-	AF027740|PTGES|9536|prostaglandin E synthase##AF217965|PTGES|9536|prostaglandin E synthase##AF010316|PTGES|9536|prostaglandin E synthase##AK311947|PTGES|9536|prostaglandin E synthase##BC008280|PTGES|9536|prostaglandin E synthase##NM_004878|PTGES|9536|prostaglandin E synthase##AF061970|PRRX2|51450|paired related homeobox 2##BC014645|PRRX2|51450|paired related homeobox 2##NM_016307|PRRX2|51450|paired related homeobox 2##AF317129|TOR1B|27348|torsin family 1, member B (torsin B)##NM_014506|TOR1B|27348|torsin family 1, member B (torsin B)##BC015578|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893204|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893205|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893696|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896532|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896533|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896867|TOR1B|27348|torsin family 1, member B (torsin B)##BT006931|TOR1A|1861|torsin family 1, member A (torsin A)##DQ892657|TOR1A|1861|torsin family 1, member A (torsin A)##DQ895897|TOR1A|1861|torsin family 1, member A (torsin A)##BC014484|TOR1A|1861|torsin family 1, member A (torsin A)##AK314505|TOR1A|1861|torsin family 1, member A (torsin A)##AK075343|TOR1A|1861|torsin family 1, member A (torsin A)	0.0	0.0	
chr7	20257129	20257284	reg1003059.p1	8.790	+	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	-226	-	BX648384 NM_152774	-444803	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-508560	-	AK295044 TSC_hg19_v1_chr7_+_20370337	113131	+	BC002630 NM_002214 M73780	113528	+	AB353947 NM_001163941 AY230001	398091	+	BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8##AB353947|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5##NM_001163941|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5##AY230001|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5	0.0	0.013771	
chr8	80979499	80979646	reg1004042.p1	8.789	+	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	-37070	-	AF311883 BT020065 AB489173 CU674904 AF151522 AF176422 AJ272214 BC001873 AK074641 AK313271 AF232239 TSC_hg19_v1_chr8_-_80680006 AK092437 AK226041 AF254637 NM_001040708 NM_012258	-299575	-	AK292737 TSC_hg19_v1_chr8_+_80523376 BC006302 S82024 AB528346 BT020034 CR456833 DQ892719 DQ895968 CU675343	-456169	+	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	13457	-	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	104198	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	418912	+	AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AF311883|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT020065|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF151522|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF176422|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AJ272214|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BC001873|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK074641|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK313271|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF232239|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK092437|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK226041|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF254637|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_001040708|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_012258|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK292737|STMN2|11075|stathmin-like 2##BC006302|STMN2|11075|stathmin-like 2##S82024|STMN2|11075|stathmin-like 2##BT020034|STMN2|11075|stathmin-like 2##CR456833|STMN2|11075|stathmin-like 2##DQ892719|STMN2|11075|stathmin-like 2##DQ895968|STMN2|11075|stathmin-like 2##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10	0.0	0.691203	CTCF.p2:-20:0.691
chr11	78143358	78143484	reg1003062.p2	8.784	+	TSC_hg19_v1_chr11_-_78128866 NM_080491	-14545	-	AB018413 BC131711 TSC_hg19_v1_chr11_-_78128848	-14615	-	AB011143 BC152459 NM_012296	-90496	-	BC007800 TSC_hg19_v1_chr11_-_78285839 AK056980	142371	-	TSC_hg19_v1_chr11_-_78285888 AK315425 NM_001243251 NM_024678	142474	-	NM_001098816 TSC_hg19_v1_chr11_-_79151755	1008303	-	NM_080491|GAB2|9846|GRB2-associated binding protein 2##AB018413|GAB2|9846|GRB2-associated binding protein 2##BC131711|GAB2|9846|GRB2-associated binding protein 2##AB011143|GAB2|9846|GRB2-associated binding protein 2##BC152459|GAB2|9846|GRB2-associated binding protein 2##NM_012296|GAB2|9846|GRB2-associated binding protein 2##BC007800|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AK056980|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AK315425|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_001243251|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_024678|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_001098816|ODZ4|26011|odz, odd Oz/ten-m homolog 4 (Drosophila)	0.991487	0.589122	denovo_WM_7:-4:0.777	CTCF.p2:30:0.589
chr4	39620248	39620411	reg1003035.p2	8.783	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-90703	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-91154	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-91322	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	20227	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	79475	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	359009	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	1.948617	0.0	denovo_WM_7:-36:0.817	denovo_WM_7:-52:0.978
chr10	38265486	38265642	reg1003529.p1	8.782	+	AJ491696 NM_145011 TSC_hg19_v1_chr10_-_38265576 AK122958 BC036038 AK056452 AX721125	-37	-	BC146820 TSC_hg19_v1_chr10_-_38147013 AK299357	-118565	-	BC132915 BC132917 BC110869 BC021819 AJ491695 AJ492196 NM_021045 TSC_hg19_v1_chr10_-_38146539	-119146	-	TSC_hg19_v1_chr10_+_38299631 NM_006954 NM_006974 AK303445 AK292844 BC017760 AK027057 D31763	34031	+	TSC_hg19_v1_chr10_+_38383292 NM_001007094 NM_001178101 NM_003421 AK092012 AX747310 BX647089 AJ492195 BC015858	117719	+	AK295332 AY829267 AF165514 AF165517 BC071987 TSC_hg19_v1_chr10_+_38645320 AK293968 AK307174 CU687208	379773	+	AJ491696|ZNF25|219749|zinc finger protein 25##NM_145011|ZNF25|219749|zinc finger protein 25##AK122958|ZNF25|219749|zinc finger protein 25##BC036038|ZNF25|219749|zinc finger protein 25##AK056452|ZNF25|219749|zinc finger protein 25##BC146820|ZNF248|57209|zinc finger protein 248##AK299357|ZNF248|57209|zinc finger protein 248##BC132915|ZNF248|57209|zinc finger protein 248##BC132917|ZNF248|57209|zinc finger protein 248##BC110869|ZNF248|57209|zinc finger protein 248##BC021819|ZNF248|57209|zinc finger protein 248##AJ491695|ZNF248|57209|zinc finger protein 248##AJ492196|ZNF248|57209|zinc finger protein 248##NM_021045|ZNF248|57209|zinc finger protein 248##NM_006954|ZNF33A|7581|zinc finger protein 33A##NM_006974|ZNF33A|7581|zinc finger protein 33A##AK303445|ZNF33A|7581|zinc finger protein 33A##AK292844|ZNF33A|7581|zinc finger protein 33A##BC017760|ZNF33A|7581|zinc finger protein 33A##AK027057|ZNF33A|7581|zinc finger protein 33A##D31763|ZNF33A|7581|zinc finger protein 33A##NM_001007094|ZNF37A|7587|zinc finger protein 37A##NM_001178101|ZNF37A|7587|zinc finger protein 37A##NM_003421|ZNF37A|7587|zinc finger protein 37A##AK092012|ZNF37A|7587|zinc finger protein 37A##BX647089|ZNF37A|7587|zinc finger protein 37A##AJ492195|ZNF37A|7587|zinc finger protein 37A##BC015858|ZNF37A|7587|zinc finger protein 37A##AK295332|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AY829267|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AF165514|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AF165517|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##BC071987|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AK293968|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AK307174|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2	0.0	0.0	
chr6	42749938	42750118	reg1003235.p3	8.782	+	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	-331	+	TSC_hg19_v1_chr6_+_42714735 D87077	-35285	+	TSC_hg19_v1_chr6_-_42714549 BC017479	-35476	-	TSC_hg19_v1_chr6_+_42750789 AK096036	633	+	TSC_hg19_v1_chr6_+_42751233 AK098234	1213	+	AL833540 NM_015349 BC130302	38803	+	AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##D87077|KIAA0240|23506|KIAA0240##BC017479|TBCC|6903|tubulin folding cofactor C##AK096036|FLJ38717|401261|FLJ38717 protein##AK098234|FLJ38717|401261|FLJ38717 protein##AL833540|KIAA0240|23506|KIAA0240##NM_015349|KIAA0240|23506|KIAA0240##BC130302|KIAA0240|23506|KIAA0240	0.985302	0.0	denovo_WM_7:45:0.493	denovo_WM_7:46:0.493
chr14	22771623	22771757	reg1002395.p1	8.780	+	AB463964 NM_001001912 AY726598	-638368	+	NM_001005466 AB529274 BC137371 BC137382	-668644	-	AB528817 NM_001005465	-732816	-	X58763 TSC_hg19_v1_chr14_+_22989364	217659	+	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	286396	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	286444	-	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##NM_001005465|OR10G3|26533|olfactory receptor, family 10, subfamily G, member 3##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1	2.807244	0.847338	CTCF.p2:-17:0.847	denovo_WM_7:36:0.854	denovo_WM_7:58:0.736	denovo_WM_7:73:0.906
chr5	158943018	158943160	reg1002339.p1	8.780	+	BC074723 M65272 NM_002187	-185615	-	TSC_hg19_v1_chr5_+_158690297 AY444562 AK057996 BC013425	-252803	+	NM_145049	-253001	+	NM_000679 U03865 BC136568 BC136569 AK309989 L31773	400736	+	TSC_hg19_v1_chr5_+_159436145 AK315262	493058	+	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	493078	+	BC074723|IL12B|3593|interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)##M65272|IL12B|3593|interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)##NM_002187|IL12B|3593|interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)##AY444562|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##AK057996|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##BC013425|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##NM_145049|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##NM_000679|ADRA1B|147|adrenergic, alpha-1B-, receptor##U03865|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136568|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136569|ADRA1B|147|adrenergic, alpha-1B-, receptor##L31773|ADRA1B|147|adrenergic, alpha-1B-, receptor##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1	1.246859	0.394895	denovo_WM_7:25:0.208	denovo_WM_7:40:0.223	CTCF.p2:-55:0.395
chr8	41160525	41160591	reg1003076.p1	8.780	+	BC019598 TSC_hg19_v1_chr8_-_40755346 AK023904 NM_001135731 NM_024645	-405221	-	BC021672 NM_020130 BC020623 TSC_hg19_v1_chr8_+_40011000 AF268037 AK026240 EU832636 EU832712	-1149540	+	AK128691 NM_194294	-1368085	+	TSC_hg19_v1_chr8_-_41166991 BC004466 AF017987 AF001900 AF056087 AK293090 BC036503 NM_003012	6472	-	TSC_hg19_v1_chr8_+_41348077 NM_001174124 NM_016099	187515	+	TSC_hg19_v1_chr8_+_41348100 AK026613	187541	+	BC019598|ZMAT4|79698|zinc finger, matrin-type 4##AK023904|ZMAT4|79698|zinc finger, matrin-type 4##NM_001135731|ZMAT4|79698|zinc finger, matrin-type 4##NM_024645|ZMAT4|79698|zinc finger, matrin-type 4##BC021672|C8orf4|56892|chromosome 8 open reading frame 4##NM_020130|C8orf4|56892|chromosome 8 open reading frame 4##BC020623|C8orf4|56892|chromosome 8 open reading frame 4##AF268037|C8orf4|56892|chromosome 8 open reading frame 4##AK026240|C8orf4|56892|chromosome 8 open reading frame 4##EU832636|C8orf4|56892|chromosome 8 open reading frame 4##EU832712|C8orf4|56892|chromosome 8 open reading frame 4##AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2##BC004466|SFRP1|6422|secreted frizzled-related protein 1##AF017987|SFRP1|6422|secreted frizzled-related protein 1##AF001900|SFRP1|6422|secreted frizzled-related protein 1##AF056087|SFRP1|6422|secreted frizzled-related protein 1##AK293090|SFRP1|6422|secreted frizzled-related protein 1##BC036503|SFRP1|6422|secreted frizzled-related protein 1##NM_003012|SFRP1|6422|secreted frizzled-related protein 1##NM_001174124|GOLGA7|51125|golgin A7##NM_016099|GOLGA7|51125|golgin A7##AK026613|GOLGA7|51125|golgin A7	0.995041	0.033158	
chr20	47357437	47357617	reg1003336.p1	8.779	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-942209	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-942775	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-1226843	+	AB037836 TSC_hg19_v1_chr20_-_47444291	86759	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	86912	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	180791	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.997469	0.0	denovo_WM_7:29:0.884
chr12	12961804	12961937	reg1002842.p1	8.778	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	-23293	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	-83014	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-91744	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	4420	+	NM_003979	82085	+	AK001761 TSC_hg19_v1_chr12_+_13044469	82541	+	BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_003979|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A##AK001761|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A	0.996467	0.0	denovo_WM_7:31:0.546
chr1	82048224	82048404	reg1003180.p1	8.777	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-276387	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-2575887	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-2932816	+	AF104266 AF104938 AF104939 NM_012302	217767	+	AK097722 TSC_hg19_v1_chr1_-_84326308	2277954	-	TSC_hg19_v1_chr1_-_84326677 BC036594	2278362	-	BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.975381	0.0	denovo_WM_7:-23:0.931
chr4	110481148	110481294	reg1002488.p1	8.776	+	TSC_hg19_v1_chr4_+_110354993 BC040137 AK300278	-126046	+	BC117135 BC143268 BC143269 BC143276 TSC_hg19_v1_chr4_+_110354970 NM_001042734 NM_006323	-126273	+	TSC_hg19_v1_chr4_-_110354918 BC009800	-126278	-	TSC_hg19_v1_chr4_+_110481443 NM_017918 AK291098 BC002633 AK095936 AK311030	196	+	AB590350 DQ894589 EU176306 U20537 TSC_hg19_v1_chr4_-_110624602 BC000305 BC004460 NM_001226 NM_032992 U20536	143370	-	DQ892725 DQ896860 CU677869 TSC_hg19_v1_chr4_-_110651216 AF306567 AF332892 AY359024 BC017218 AK075389 AK313081 NM_030821	169901	-	BC040137|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##AK300278|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC117135|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143268|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143269|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143276|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_001042734|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_006323|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC009800|1/2-SBSRNA4|100533182|lncRNA_BC009800##NM_017918|CCDC109B|55013|coiled-coil domain containing 109B##AK291098|CCDC109B|55013|coiled-coil domain containing 109B##BC002633|CCDC109B|55013|coiled-coil domain containing 109B##AK095936|CCDC109B|55013|coiled-coil domain containing 109B##AK311030|CCDC109B|55013|coiled-coil domain containing 109B##DQ894589|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##EU176306|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20537|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC000305|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC004460|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_001226|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_032992|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20536|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##DQ892725|PLA2G12A|81579|phospholipase A2, group XIIA##DQ896860|PLA2G12A|81579|phospholipase A2, group XIIA##AF306567|PLA2G12A|81579|phospholipase A2, group XIIA##AF332892|PLA2G12A|81579|phospholipase A2, group XIIA##AY359024|PLA2G12A|81579|phospholipase A2, group XIIA##BC017218|PLA2G12A|81579|phospholipase A2, group XIIA##AK075389|PLA2G12A|81579|phospholipase A2, group XIIA##AK313081|PLA2G12A|81579|phospholipase A2, group XIIA##NM_030821|PLA2G12A|81579|phospholipase A2, group XIIA	0.990794	0.0	denovo_WM_7:35:0.237	denovo_WM_7:36:0.237	denovo_WM_7:37:0.237	denovo_WM_7:38:0.237
chr3	56729063	56729178	reg1003251.p1	8.774	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-11913	-	BC029354 NM_015224	-31047	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-137874	+	AK293864 AB209661 NM_001128616	80549	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	106791	-	AY221117 NM_181727 BC126274 BC136498	365383	+	BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12	0.04129	0.0	
chr2	156967703	156967825	reg1000416.p2	8.773	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1412575	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-2239320	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-2632513	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	218926	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	221399	-	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	324194	+	NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.984853	0.0	denovo_WM_7:-63:0.417	denovo_WM_7:-72:0.416
chr1	3572705	3572852	reg1003052.p1	8.772	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-3652	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-6162	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-31169	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	34480	+	AK310432 NM_001204192 AK302118	41837	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	91139	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	0.9938	0.012023	denovo_WM_7:-29:0.248	denovo_WM_7:-30:0.248	denovo_WM_7:-31:0.248	denovo_WM_7:-32:0.248
chr1	97927478	97927645	reg1003000.p1	8.768	+	BC030757 TSC_hg19_v1_chr1_+_97260652	-666978	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-740277	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-782365	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	458928	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	458998	-	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	459045	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase	0.914254	0.0	denovo_WM_7:1:0.765
chr11	33916607	33916759	reg1003142.p2	8.767	+	NM_005574 X61118	-2848	-	TSC_hg19_v1_chr11_-_33891485 NM_001142315	-25187	-	BC042426 TSC_hg19_v1_chr11_-_33891402 BC034041 NM_001142316	-25292	-	TSC_hg19_v1_chr11_+_34073238 BC001731 NM_005898 NM_203364	156530	+	TSC_hg19_v1_chr11_+_34073889 AK299720	157221	+	TSC_hg19_v1_chr11_+_34073950 Z48042	157254	+	NM_005574|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##X61118|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##NM_001142315|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC042426|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC034041|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##NM_001142316|LMO2|4005|LIM domain only 2 (rhombotin-like 1)##BC001731|CAPRIN1|4076|cell cycle associated protein 1##NM_005898|CAPRIN1|4076|cell cycle associated protein 1##NM_203364|CAPRIN1|4076|cell cycle associated protein 1##AK299720|CAPRIN1|4076|cell cycle associated protein 1##Z48042|CAPRIN1|4076|cell cycle associated protein 1	1.972476	0.128983	denovo_WM_7:-25:0.820	denovo_WM_7:30:0.348	denovo_WM_7:31:0.630
chr2	176440380	176440535	reg1003069.p2	8.766	+	CR407601 EU832770 GQ129314 BC106881 U09813 NM_001002258 TSC_hg19_v1_chr2_-_176046438 AK311999 NM_001190329 NM_001689	-394153	-	TSC_hg19_v1_chr2_-_176032932 BC026175 BC107698 DQ003036 DQ003037 DQ003038 DQ003039 DQ003040 DQ003041 DQ003042 DQ003043 DQ003044 DQ003045 DQ003046 DQ003047 DQ003048 DQ003049 NM_001880 AK128731 BX648469	-407562	-	AK289941 BC011393 NM_001822 TSC_hg19_v1_chr2_-_175870101 AB209788 AK300890 NM_001025201	-570444	-	TSC_hg19_v1_chr2_-_176866988 AB051502 AK056532 BC110329 BC105132 BC105134 BC143681 BC143683 AK302833 BC064661 NM_030650 CR936742	426518	-	NM_001080458	508232	-	TSC_hg19_v1_chr2_+_176957451 NM_000523 AB463753	517087	+	CR407601|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##EU832770|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##GQ129314|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC106881|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##U09813|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001002258|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##AK311999|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001190329|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001689|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC026175|ATF2|1386|activating transcription factor 2##BC107698|ATF2|1386|activating transcription factor 2##DQ003036|ATF2|1386|activating transcription factor 2##DQ003037|ATF2|1386|activating transcription factor 2##DQ003038|ATF2|1386|activating transcription factor 2##DQ003039|ATF2|1386|activating transcription factor 2##DQ003040|ATF2|1386|activating transcription factor 2##DQ003041|ATF2|1386|activating transcription factor 2##DQ003042|ATF2|1386|activating transcription factor 2##DQ003043|ATF2|1386|activating transcription factor 2##DQ003044|ATF2|1386|activating transcription factor 2##DQ003045|ATF2|1386|activating transcription factor 2##DQ003046|ATF2|1386|activating transcription factor 2##DQ003047|ATF2|1386|activating transcription factor 2##DQ003048|ATF2|1386|activating transcription factor 2##DQ003049|ATF2|1386|activating transcription factor 2##NM_001880|ATF2|1386|activating transcription factor 2##AK128731|ATF2|1386|activating transcription factor 2##BX648469|ATF2|1386|activating transcription factor 2##AK289941|CHN1|1123|chimerin (chimaerin) 1##BC011393|CHN1|1123|chimerin (chimaerin) 1##NM_001822|CHN1|1123|chimerin (chimaerin) 1##AB209788|CHN1|1123|chimerin (chimaerin) 1##AK300890|CHN1|1123|chimerin (chimaerin) 1##NM_001025201|CHN1|1123|chimerin (chimaerin) 1##AB051502|KIAA1715|80856|KIAA1715##AK056532|KIAA1715|80856|KIAA1715##BC110329|KIAA1715|80856|KIAA1715##BC105132|KIAA1715|80856|KIAA1715##BC105134|KIAA1715|80856|KIAA1715##BC143681|KIAA1715|80856|KIAA1715##BC143683|KIAA1715|80856|KIAA1715##AK302833|KIAA1715|80856|KIAA1715##BC064661|KIAA1715|80856|KIAA1715##NM_030650|KIAA1715|80856|KIAA1715##CR936742|KIAA1715|80856|KIAA1715##NM_001080458|EVX2|344191|even-skipped homeobox 2##NM_000523|HOXD13|3239|homeobox D13	0.995394	0.0	denovo_WM_7:-36:0.815
chr12	121103931	121104080	reg1002900.p1	8.762	+	AF169148 AF169149 NM_004276 NM_031205	-15635	+	BC030201 NM_001033677	-25584	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	-84817	-	TSC_hg19_v1_chr12_+_121124951 NM_014730	20933	+	TSC_hg19_v1_chr12_+_121124973 D63486 BC016297 BC000371	21034	+	CR936818 TSC_hg19_v1_chr12_+_121132759	28713	+	AF169148|CABP1|9478|calcium binding protein 1##AF169149|CABP1|9478|calcium binding protein 1##NM_004276|CABP1|9478|calcium binding protein 1##NM_031205|CABP1|9478|calcium binding protein 1##BC030201|CABP1|9478|calcium binding protein 1##NM_001033677|CABP1|9478|calcium binding protein 1##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_014730|MLEC|9761|malectin##D63486|MLEC|9761|malectin##BC016297|MLEC|9761|malectin##BC000371|MLEC|9761|malectin	0.998363	0.0	denovo_WM_7:8:0.229	denovo_WM_7:9:0.229	denovo_WM_7:10:0.229	denovo_WM_7:11:0.229
chr17	80666035	80666197	reg1003198.p1	8.761	+	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	-9582	-	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	-59833	-	TSC_hg19_v1_chr17_+_80477607 NM_004514	-188526	+	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	8490	+	TSC_hg19_v1_chr17_+_80693490 NM_022158 AK294871 BC042680 AJ404615 CU692116	27346	+	TSC_hg19_v1_chr17_+_80709949 BC003094 NM_005993 AB023205 AK293471 BC006364	43838	+	BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##NM_004514|FOXK2|3607|forkhead box K2##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein##NM_022158|FN3K|64122|fructosamine 3 kinase##AK294871|FN3K|64122|fructosamine 3 kinase##BC042680|FN3K|64122|fructosamine 3 kinase##AJ404615|FN3K|64122|fructosamine 3 kinase##BC003094|TBCD|6904|tubulin folding cofactor D##NM_005993|TBCD|6904|tubulin folding cofactor D##AB023205|TBCD|6904|tubulin folding cofactor D##AK293471|TBCD|6904|tubulin folding cofactor D##BC006364|TBCD|6904|tubulin folding cofactor D	0.0	0.0	
chr5	177657875	177658027	reg1003310.p1	8.761	+	AK223425 TSC_hg19_v1_chr5_+_177631534 BC004561 BC009359 BC001616 BC002625 BC015556 BC036708 M65028	-26379	+	AK054600 TSC_hg19_v1_chr5_+_177631533	-26418	+	TSC_hg19_v1_chr5_+_177631530 AK097657 NM_004499 NM_031266	-26437	+	CU691508 TSC_hg19_v1_chr5_-_177659566 AK024076	1631	-	TSC_hg19_v1_chr5_-_177659788 BC039012 BC028002 BC067745 AK292061 BC037567 BC008009 BC088800 BC037238 BC110335	1823	-	TSC_hg19_v1_chr5_-_177659803 NM_153373	1867	-	AK223425|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC004561|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC009359|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC001616|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC002625|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC015556|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC036708|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##M65028|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK054600|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK097657|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_004499|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_031266|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK024076|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC039012|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC028002|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC067745|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##AK292061|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC037567|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC008009|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC088800|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC037238|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##BC110335|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2##NM_153373|AGXT2L2|85007|alanine-glyoxylate aminotransferase 2-like 2	0.999377	0.0	denovo_WM_7:-19:0.739
chr19	15126932	15127032	reg1003333.p1	8.760	+	AK097684 NM_173482 BC035678	-5436	+	TSC_hg19_v1_chr19_-_15090354 BC028721 BC040604	-36556	-	NM_005071 U18244	-43253	-	EU502748 AK313992 NM_012114	33260	+	BC140930 AB529304 NM_001004713	70851	+	TSC_hg19_v1_chr19_+_15218213 AK123686 NM_033025 AK315453 BC029926 CU688794	91209	+	AK097684|CCDC105|126402|coiled-coil domain containing 105##NM_173482|CCDC105|126402|coiled-coil domain containing 105##BC035678|CCDC105|126402|coiled-coil domain containing 105##BC028721|SLC1A6|6511|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6##BC040604|SLC1A6|6511|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6##NM_005071|SLC1A6|6511|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6##U18244|SLC1A6|6511|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6##EU502748|CASP14|23581|caspase 14, apoptosis-related cysteine peptidase##AK313992|CASP14|23581|caspase 14, apoptosis-related cysteine peptidase##NM_012114|CASP14|23581|caspase 14, apoptosis-related cysteine peptidase##BC140930|OR1I1|126370|olfactory receptor, family 1, subfamily I, member 1##NM_001004713|OR1I1|126370|olfactory receptor, family 1, subfamily I, member 1##AK123686|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##NM_033025|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##AK315453|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)##BC029926|SYDE1|85360|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	0.999019	0.0	
chr1	222924117	222924237	reg1003466.p1	8.758	+	AK125494 NM_207468	-13620	+	TSC_hg19_v1_chr1_+_222886732 AK315930 AK293974	-37444	+	TSC_hg19_v1_chr1_+_222886714 AK304445	-37489	+	TSC_hg19_v1_chr1_+_222988422 NM_032890	64214	+	TSC_hg19_v1_chr1_-_223316591 NM_003268	392429	-	AK096265 AK000914 BC004888 AK296923 EF560748 AK295553 AY358495 NM_001037175 NM_017982	613294	-	AK125494|FAM177B|400823|family with sequence similarity 177, member B##NM_207468|FAM177B|400823|family with sequence similarity 177, member B##AK315930|BROX|148362|BRO1 domain and CAAX motif containing##AK293974|BROX|148362|BRO1 domain and CAAX motif containing##AK304445|BROX|148362|BRO1 domain and CAAX motif containing##NM_032890|DISP1|84976|dispatched homolog 1 (Drosophila)##NM_003268|TLR5|7100|toll-like receptor 5##AK096265|SUSD4|55061|sushi domain containing 4##AK000914|SUSD4|55061|sushi domain containing 4##BC004888|SUSD4|55061|sushi domain containing 4##AK296923|SUSD4|55061|sushi domain containing 4##EF560748|SUSD4|55061|sushi domain containing 4##AK295553|SUSD4|55061|sushi domain containing 4##AY358495|SUSD4|55061|sushi domain containing 4##NM_001037175|SUSD4|55061|sushi domain containing 4##NM_017982|SUSD4|55061|sushi domain containing 4	0.987641	0.0	denovo_WM_7:-21:0.874
chr5	130710688	130710868	reg1002953.p2	8.756	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-110978	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-111010	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-111022	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	259979	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	260041	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	260100	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.997886	0.0	denovo_WM_7:-43:0.298	denovo_WM_7:-44:0.298	denovo_WM_7:-45:0.298
chr17	58475691	58475844	reg1003660.p1	8.755	+	TSC_hg19_v1_chr17_-_58469580 NM_032582 AK057301	-6095	-	TSC_hg19_v1_chr17_-_58469447 AF533230	-6309	-	CU691084 TSC_hg19_v1_chr17_-_58469313 BC054344	-6449	-	TSC_hg19_v1_chr17_+_58499858 NM_181707 BC036356 BC048806	24112	+	AB587349 TSC_hg19_v1_chr17_-_58603343 AK292227	127562	-	AK307666 TSC_hg19_v1_chr17_-_58603582 BC018121 AF017782 D86981 NM_006380	127770	-	NM_032582|USP32|84669|ubiquitin specific peptidase 32##AK057301|USP32|84669|ubiquitin specific peptidase 32##AF533230|USP32|84669|ubiquitin specific peptidase 32##BC054344|USP32|84669|ubiquitin specific peptidase 32##NM_181707|C17orf64|124773|chromosome 17 open reading frame 64##BC036356|C17orf64|124773|chromosome 17 open reading frame 64##BC048806|C17orf64|124773|chromosome 17 open reading frame 64##AK292227|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##AK307666|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##BC018121|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##AF017782|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##D86981|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##NM_006380|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	0.980813	0.0	denovo_WM_7:5:0.409
chr5	156341052	156341210	reg1003996.p1	8.755	+	TSC_hg19_v1_chr5_+_155754172 BC020740 AK292794	-586958	+	BX537948 NM_000337 NM_001128209 NM_172244	-587371	+	NM_001099293 AK302388	-1947845	+	CU679215 AK301337 AK312746 BC008988 NM_001146726 NM_138379	49104	-	BC013325 TSC_hg19_v1_chr5_-_156485247	144052	-	TSC_hg19_v1_chr5_-_156485459 NM_001099414 NM_012206	144334	-	BC020740|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##AK292794|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##BX537948|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_000337|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_001128209|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_172244|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_001099293|KIF4B|285643|kinesin family member 4B##AK302388|KIF4B|285643|kinesin family member 4B##AK301337|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##AK312746|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##BC008988|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##NM_001146726|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##NM_138379|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##BC013325|HAVCR1|26762|hepatitis A virus cellular receptor 1##NM_001099414|HAVCR1|26762|hepatitis A virus cellular receptor 1##NM_012206|HAVCR1|26762|hepatitis A virus cellular receptor 1	0.275306	0.0	denovo_WM_7:-12:0.247
chr6	137110699	137110879	reg1003462.p4	8.755	+	NM_001198616 NM_001198617 NM_003980	-238833	-	TSC_hg19_v1_chr6_-_136871561 AJ242501 AJ242502 CU693064 AB384694 DQ890946 DQ896812 BC025777 AK312789 X73882	-239168	-	AK296483 AK311270 NM_001198614 NM_001198618 TSC_hg19_v1_chr6_-_136847745 AK311114 AK311236 AK316062 NM_001198619 AK311234	-262992	-	TSC_hg19_v1_chr6_-_137113169 AB384845	2441	-	TSC_hg19_v1_chr6_-_137113545 AK310942 D84476	2759	-	BC054503 TSC_hg19_v1_chr6_-_137113611	2821	-	NM_001198616|MAP7|9053|microtubule-associated protein 7##NM_001198617|MAP7|9053|microtubule-associated protein 7##NM_003980|MAP7|9053|microtubule-associated protein 7##AJ242501|MAP7|9053|microtubule-associated protein 7##AJ242502|MAP7|9053|microtubule-associated protein 7##DQ890946|MAP7|9053|microtubule-associated protein 7##DQ896812|MAP7|9053|microtubule-associated protein 7##BC025777|MAP7|9053|microtubule-associated protein 7##AK312789|MAP7|9053|microtubule-associated protein 7##X73882|MAP7|9053|microtubule-associated protein 7##AK296483|MAP7|9053|microtubule-associated protein 7##AK311270|MAP7|9053|microtubule-associated protein 7##NM_001198614|MAP7|9053|microtubule-associated protein 7##NM_001198618|MAP7|9053|microtubule-associated protein 7##AK311114|MAP7|9053|microtubule-associated protein 7##AK311236|MAP7|9053|microtubule-associated protein 7##AK316062|MAP7|9053|microtubule-associated protein 7##NM_001198619|MAP7|9053|microtubule-associated protein 7##AK311234|MAP7|9053|microtubule-associated protein 7##AK310942|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##D84476|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##BC054503|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5	1.993038	0.0	denovo_WM_7:31:0.469	denovo_WM_7:32:0.359	denovo_WM_7:46:0.480	denovo_WM_7:47:0.438
chrX	46492770	46492950	reg1002751.p2	8.755	+	NM_019886 BC045537 BC023971 AB040711 AB037187 GQ129386 GQ129387	-59582	+	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	-87916	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	-88004	-	AF298591 NM_032591 TSC_hg19_v1_chrX_-_46618577	125669	-	TSC_hg19_v1_chrX_-_46618608 BC094742	125770	-	NM_006915 AJ007590 TSC_hg19_v1_chrX_+_46696391 BC027851	203517	+	NM_019886|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC045537|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC023971|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB040711|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB037187|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129386|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129387|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##AF298591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_032591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##BC094742|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_006915|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AJ007590|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC027851|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)	2.993531	0.0	denovo_WM_7:-50:0.789	denovo_WM_7:-65:0.712	denovo_WM_7:-80:0.644	denovo_WM_7:-81:0.306
chr14	74757313	74757433	reg1003766.p1	8.754	+	AY336059 NM_182894 BC128153	-51177	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	-205705	+	TSC_hg19_v1_chr14_-_74551167 BC032371 NM_005589	-206184	-	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	12317	-	NM_018228 TSC_hg19_v1_chr14_+_74815173	57796	+	BC053325 AK023213 TSC_hg19_v1_chr14_+_74815209 AK001673	57829	+	AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##BC032371|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_005589|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_018228|VRTN|55237|vertebrae development homolog (pig)##BC053325|VRTN|55237|vertebrae development homolog (pig)##AK023213|VRTN|55237|vertebrae development homolog (pig)##AK001673|VRTN|55237|vertebrae development homolog (pig)	0.994636	0.02319	
chr5	123006952	123007132	reg1000080.p2	8.753	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-159160	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-247898	-	NM_001136239 AK297992 AF272898 AF272899	-582198	+	BC131507 AB033107 BC151226 NM_020747	1073746	-	NM_001146319 AK316288 AK300154	2688772	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	2751801	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr11	85306508	85306622	reg1002837.p1	8.752	+	U32376 AB209252 AK295094 NM_001364	-672115	-	TSC_hg19_v1_chr11_-_84634219 AK299797 BC143964	-672333	-	AK127150 NM_001206769 TSC_hg19_v1_chr11_-_84028381	-1278184	-	CR749820 NM_001142699	31748	-	NM_001193537 NM_001193538 NM_018480 TSC_hg19_v1_chr11_+_85339636 AK298189 BC017574 BC107900 AF220193 AF246240 AK291150 BC038933 BC012065	33081	+	NM_001244735 NM_032273 AL136941 AK312081 BC007875	52438	+	U32376|DLG2|1740|discs, large homolog 2 (Drosophila)##AB209252|DLG2|1740|discs, large homolog 2 (Drosophila)##AK295094|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001364|DLG2|1740|discs, large homolog 2 (Drosophila)##AK299797|DLG2|1740|discs, large homolog 2 (Drosophila)##BC143964|DLG2|1740|discs, large homolog 2 (Drosophila)##AK127150|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001206769|DLG2|1740|discs, large homolog 2 (Drosophila)##CR749820|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142699|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001193537|TMEM126B|55863|transmembrane protein 126B##NM_001193538|TMEM126B|55863|transmembrane protein 126B##NM_018480|TMEM126B|55863|transmembrane protein 126B##AK298189|TMEM126B|55863|transmembrane protein 126B##BC017574|TMEM126B|55863|transmembrane protein 126B##BC107900|TMEM126B|55863|transmembrane protein 126B##AF220193|TMEM126B|55863|transmembrane protein 126B##AF246240|TMEM126B|55863|transmembrane protein 126B##AK291150|TMEM126B|55863|transmembrane protein 126B##BC038933|TMEM126B|55863|transmembrane protein 126B##BC012065|TMEM126B|55863|transmembrane protein 126B##NM_001244735|TMEM126A|84233|transmembrane protein 126A##NM_032273|TMEM126A|84233|transmembrane protein 126A##AL136941|TMEM126A|84233|transmembrane protein 126A##AK312081|TMEM126A|84233|transmembrane protein 126A##BC007875|TMEM126A|84233|transmembrane protein 126A	0.988735	0.751343	denovo_WM_7:19:0.977	CTCF.p2:-47:0.751
chr4	26862461	26862593	reg1003334.p1	8.752	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-276847	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-370542	-	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-539845	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	13	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3859472	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3859667	+	NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7	0.998388	0.0	denovo_WM_7:27:0.229	denovo_WM_7:28:0.229	denovo_WM_7:29:0.229	denovo_WM_7:30:0.229
chr9	132769830	132769999	reg1002519.p2	8.752	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-172149	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-172192	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-172230	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	35440	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	35574	-	BC039728 NM_001136557 NM_001136558 NM_020960	46070	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.081758	0.0	
chr5	162889792	162889936	reg1002351.p4	8.747	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-2269	+	AK311957 TSC_hg19_v1_chr5_-_162887119 BC017934 BX538290 NM_145266	-2731	-	AB528197 AM392736 AM393438 FJ215684 AK094647 TSC_hg19_v1_chr5_-_162887097	-2786	-	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	40424	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	42779	+	HE578282 HE578283 NM_001122679	3821978	+	NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK311957|NUDCD2|134492|NudC domain containing 2##BC017934|NUDCD2|134492|NudC domain containing 2##BX538290|NUDCD2|134492|NudC domain containing 2##NM_145266|NUDCD2|134492|NudC domain containing 2##AM392736|NUDCD2|134492|NudC domain containing 2##AM393438|NUDCD2|134492|NudC domain containing 2##FJ215684|NUDCD2|134492|NudC domain containing 2##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)	0.997574	0.0	
chr1	28655590	28655769	reg1001906.p1	8.746	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	-132	+	TSC_hg19_v1_chr1_+_28586034 NM_031459 BC013304 AY123223 BC033719 AL136551 AK315710 DQ892827 DQ896073 EU831582 EU831667 AB529110 CU680558	-69521	+	TSC_hg19_v1_chr1_+_28562634 NM_016311 NM_178190 NM_178191 AK316600 BC009677 AK000934 AB029042 BT009849 CR457097 EU832478 EU832558 BC017562 BC004955	-93030	+	TSC_hg19_v1_chr1_+_28696251 NM_001048183 CR749449 AK025436 BC029266 BC016152 BC068508	40546	+	NM_023923 BC021247	108991	+	NM_001048199 TSC_hg19_v1_chr1_+_28832500	176819	+	NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18##NM_031459|SESN2|83667|sestrin 2##BC013304|SESN2|83667|sestrin 2##AY123223|SESN2|83667|sestrin 2##BC033719|SESN2|83667|sestrin 2##AL136551|SESN2|83667|sestrin 2##AK315710|SESN2|83667|sestrin 2##DQ892827|SESN2|83667|sestrin 2##DQ896073|SESN2|83667|sestrin 2##EU831582|SESN2|83667|sestrin 2##EU831667|SESN2|83667|sestrin 2##NM_016311|ATPIF1|93974|ATPase inhibitory factor 1##NM_178190|ATPIF1|93974|ATPase inhibitory factor 1##NM_178191|ATPIF1|93974|ATPase inhibitory factor 1##AK316600|ATPIF1|93974|ATPase inhibitory factor 1##BC009677|ATPIF1|93974|ATPase inhibitory factor 1##AK000934|ATPIF1|93974|ATPase inhibitory factor 1##AB029042|ATPIF1|93974|ATPase inhibitory factor 1##BT009849|ATPIF1|93974|ATPase inhibitory factor 1##CR457097|ATPIF1|93974|ATPase inhibitory factor 1##EU832478|ATPIF1|93974|ATPase inhibitory factor 1##EU832558|ATPIF1|93974|ATPase inhibitory factor 1##BC017562|ATPIF1|93974|ATPase inhibitory factor 1##BC004955|ATPIF1|93974|ATPase inhibitory factor 1##NM_001048183|PHACTR4|65979|phosphatase and actin regulator 4##CR749449|PHACTR4|65979|phosphatase and actin regulator 4##AK025436|PHACTR4|65979|phosphatase and actin regulator 4##BC029266|PHACTR4|65979|phosphatase and actin regulator 4##BC016152|PHACTR4|65979|phosphatase and actin regulator 4##BC068508|PHACTR4|65979|phosphatase and actin regulator 4##NM_023923|PHACTR4|65979|phosphatase and actin regulator 4##BC021247|PHACTR4|65979|phosphatase and actin regulator 4##NM_001048199|RCC1|1104|regulator of chromosome condensation 1	0.0	0.0	
chr4	77905411	77905562	reg1003257.p1	8.746	+	TSC_hg19_v1_chr4_+_77871005 AK001711 AL110300 AK302700 BC063615 GU727629 AB587498	-34486	+	TSC_hg19_v1_chr4_+_77870908 BC064934	-34574	+	TSC_hg19_v1_chr4_+_77870905 BC008083 NM_018243	-34601	+	AK124592 CR627457 TSC_hg19_v1_chr4_+_77954068	48519	+	TSC_hg19_v1_chr4_-_77997145 BC000420 BC004975 NM_006835 AB209766 AK301111 AK312632	91666	-	TSC_hg19_v1_chr4_+_78078359 NM_004354 AK292029 BC032518	172875	+	AK001711|SEPT11|55752|septin 11##AL110300|SEPT11|55752|septin 11##AK302700|SEPT11|55752|septin 11##BC063615|SEPT11|55752|septin 11##GU727629|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11##BC008083|SEPT11|55752|septin 11##NM_018243|SEPT11|55752|septin 11##AK124592|SEPT11|55752|septin 11##BC000420|CCNI|10983|cyclin I##BC004975|CCNI|10983|cyclin I##NM_006835|CCNI|10983|cyclin I##AB209766|CCNI|10983|cyclin I##AK301111|CCNI|10983|cyclin I##AK312632|CCNI|10983|cyclin I##NM_004354|CCNG2|901|cyclin G2##AK292029|CCNG2|901|cyclin G2##BC032518|CCNG2|901|cyclin G2	0.985939	0.0	denovo_WM_7:-5:0.986
chr14	23938584	23938764	reg1002807.p1	8.743	+	M58018 TSC_hg19_v1_chr14_-_23904870 AK307590 EU747717 NM_000257	-33815	-	TSC_hg19_v1_chr14_-_23877483 AK309494 NM_002471 X56181	-61191	-	TSC_hg19_v1_chr14_+_23845933 AF479262 NM_001037288 NM_138460	-92700	+	TSC_hg19_v1_chr14_+_23938899 NM_001042635 NM_015514 AK124318	217	+	TSC_hg19_v1_chr14_+_23938911 AK291875 AL050003 BC030817 AK022215 CU689028 EU832521 EU832603	239	+	BC131533 TSC_hg19_v1_chr14_-_24020861 AB028979 NM_033400	82146	-	M58018|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##AK307590|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##EU747717|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##NM_000257|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##AK309494|MYH6|4624|myosin, heavy chain 6, cardiac muscle, alpha##NM_002471|MYH6|4624|myosin, heavy chain 6, cardiac muscle, alpha##X56181|MYH6|4624|myosin, heavy chain 6, cardiac muscle, alpha##AF479262|CMTM5|116173|CKLF-like MARVEL transmembrane domain containing 5##NM_001037288|CMTM5|116173|CKLF-like MARVEL transmembrane domain containing 5##NM_138460|CMTM5|116173|CKLF-like MARVEL transmembrane domain containing 5##NM_001042635|NGDN|25983|neuroguidin, EIF4E binding protein##NM_015514|NGDN|25983|neuroguidin, EIF4E binding protein##AK124318|NGDN|25983|neuroguidin, EIF4E binding protein##AK291875|NGDN|25983|neuroguidin, EIF4E binding protein##AL050003|NGDN|25983|neuroguidin, EIF4E binding protein##BC030817|NGDN|25983|neuroguidin, EIF4E binding protein##AK022215|NGDN|25983|neuroguidin, EIF4E binding protein##EU832521|NGDN|25983|neuroguidin, EIF4E binding protein##EU832603|NGDN|25983|neuroguidin, EIF4E binding protein##BC131533|ZFHX2|85446|zinc finger homeobox 2##AB028979|ZFHX2|85446|zinc finger homeobox 2##NM_033400|ZFHX2|85446|zinc finger homeobox 2	0.0	0.0	
chr11	64540221	64540360	reg1003032.p2	8.742	+	NM_001164716 NM_005609	-12104	-	AF066859 HQ258678 AK314474 BC029305 AK056607 AK299376 AK299461 TSC_hg19_v1_chr11_-_64527447	-12882	-	BC117151 AF043722 AF043723 NM_153819 Y12336	-27364	-	AK293753 NM_001178031	4941	-	CU675923 EU832634 EU832710 AB489174 TSC_hg19_v1_chr11_-_64545887 Y08765	5594	-	TSC_hg19_v1_chr11_-_64545954 BC038446 NM_001178030	5654	-	NM_001164716|PYGM|5837|phosphorylase, glycogen, muscle##NM_005609|PYGM|5837|phosphorylase, glycogen, muscle##AF066859|PYGM|5837|phosphorylase, glycogen, muscle##HQ258678|PYGM|5837|phosphorylase, glycogen, muscle##AK314474|PYGM|5837|phosphorylase, glycogen, muscle##BC029305|PYGM|5837|phosphorylase, glycogen, muscle##AK056607|PYGM|5837|phosphorylase, glycogen, muscle##AK299376|PYGM|5837|phosphorylase, glycogen, muscle##AK299461|PYGM|5837|phosphorylase, glycogen, muscle##BC117151|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##AF043722|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##AF043723|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##NM_153819|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##Y12336|RASGRP2|10235|RAS guanyl releasing protein 2 (calcium and DAG-regulated)##AK293753|SF1|7536|splicing factor 1##NM_001178031|SF1|7536|splicing factor 1##EU832634|SF1|7536|splicing factor 1##EU832710|SF1|7536|splicing factor 1##Y08765|SF1|7536|splicing factor 1##BC038446|SF1|7536|splicing factor 1##NM_001178030|SF1|7536|splicing factor 1	0.953226	0.0	denovo_WM_7:-10:0.570	denovo_WM_7:-11:0.338
chr21	43368871	43369050	reg1003417.p1	8.742	+	BC062323 AL833323 NM_199050	-22171	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-69462	-	AK027424 TSC_hg19_v1_chr21_-_43187270	-181693	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	5123	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	61511	-	AB051810 AB051811 NM_001199527 NM_001199528	114107	+	BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1	1.987367	0.0	denovo_WM_7:27:0.336	denovo_WM_7:28:0.230	denovo_WM_7:45:0.660
chr2	38936641	38936802	reg1003233.p1	8.742	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-43466	+	NM_138801 TSC_hg19_v1_chr2_+_38893054	-43669	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-106580	-	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	41795	-	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	68634	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	166307	-	BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	0.992617	0.0	denovo_WM_7:-19:0.703
chr11	692834	692951	reg1002584.p1	8.741	+	TSC_hg19_v1_chr11_+_637268 EU432112 L12398 NM_000797 S76942	-55606	+	NM_021920	-65720	-	AF276242 AF301909 TSC_hg19_v1_chr11_-_624945 AY358368 BC038405 AK000226 AK300991 AK308040 AK309157 AK000384 NM_001171968 NM_021924 NM_031264 AF258678 AF258679	-67858	-	AB489172 AF068892 AF068893 AF068894 AF068895 AF068896 AF068897 AF007165 TSC_hg19_v1_chr11_-_694998	2028	-	TSC_hg19_v1_chr11_-_695046 AK289873 EU831436 EU831528	2136	-	TSC_hg19_v1_chr11_-_695070 AF049459	2205	-	EU432112|DRD4|1815|dopamine receptor D4##L12398|DRD4|1815|dopamine receptor D4##NM_000797|DRD4|1815|dopamine receptor D4##S76942|DRD4|1815|dopamine receptor D4##NM_021920|SCT|6343|secretin##AF276242|CDHR5|53841|cadherin-related family member 5##AF301909|CDHR5|53841|cadherin-related family member 5##AY358368|CDHR5|53841|cadherin-related family member 5##BC038405|CDHR5|53841|cadherin-related family member 5##AK000226|CDHR5|53841|cadherin-related family member 5##AK300991|CDHR5|53841|cadherin-related family member 5##AK308040|CDHR5|53841|cadherin-related family member 5##AK309157|CDHR5|53841|cadherin-related family member 5##AK000384|CDHR5|53841|cadherin-related family member 5##NM_001171968|CDHR5|53841|cadherin-related family member 5##NM_021924|CDHR5|53841|cadherin-related family member 5##NM_031264|CDHR5|53841|cadherin-related family member 5##AF258678|CDHR5|53841|cadherin-related family member 5##AF258679|CDHR5|53841|cadherin-related family member 5##AF068892|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF068893|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF068894|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF068895|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF068896|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF068897|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF007165|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AK289873|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##EU831436|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##EU831528|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AF049459|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)	0.997883	0.0	denovo_WM_7:-30:0.890
chr12	54585261	54585408	reg1000078.p1	8.741	+	BC088352 BC000417 TSC_hg19_v1_chr12_-_54582755 AK091468 AX747003 NM_001243789 NM_001243790 BC105607 AK001789 AK001235 AK222473 AK290274 NM_001243787 NM_001243788 NM_001243791 NM_014311	-2648	-	BC030212 TSC_hg19_v1_chr12_-_54541132	-44253	-	TSC_hg19_v1_chr12_+_54519846 BC009385	-65476	+	BC006821 NM_001127322 TSC_hg19_v1_chr12_-_54653330	67990	-	NM_001127321 TSC_hg19_v1_chr12_-_54653370	68037	-	TSC_hg19_v1_chr12_-_54673880 L07515 S62077	88548	-	BC088352|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC000417|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK091468|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243790|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC105607|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001235|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK222473|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK290274|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243787|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243788|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243791|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_014311|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC009385|LOC400043|400043|uncharacterized LOC400043##BC006821|CBX5|23468|chromobox homolog 5##NM_001127322|CBX5|23468|chromobox homolog 5##NM_001127321|CBX5|23468|chromobox homolog 5##L07515|CBX5|23468|chromobox homolog 5##S62077|CBX5|23468|chromobox homolog 5	0.0	0.0	
chr1	204490472	204490600	reg1002897.p2	8.740	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	-4926	+	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	-5034	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-26771	-	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	164055	-	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	307276	+	TSC_hg19_v1_chr1_+_204839989 AK308686	349447	+	AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AK308686|NFASC|23114|neurofascin	0.89764	0.0	denovo_WM_7:-1:0.677
chr2	112252594	112252724	reg1002964.p2	8.739	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-374172	+	AK300513 NM_001142807 BC022268	-762480	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-816837	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	388967	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	389102	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	403526	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.990947	0.0	denovo_WM_7:-19:0.214	denovo_WM_7:-21:0.599
chr3	15847409	15847555	reg1003314.p1	8.738	+	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	-7800	-	AY367056 NM_001195099 BC035170 BC048975	-49405	-	TSC_hg19_v1_chr3_+_15643452 AK301838	-204019	+	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	53530	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	368712	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	458907	-	AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28##AK301838|BTD|686|biotinidase##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)	0.0	0.0	
chr3	49984254	49984406	reg1002298.p1	8.737	+	AK308794 AK303371 TSC_hg19_v1_chr3_+_49977584 AF091264 AK093836 AY216800 BC030057 EF566883 EF566884 EF566885 BC046643 AF042857	-6727	+	AK291719 NM_001167582 NM_005777 AK298108 AF069517 AL832236 TSC_hg19_v1_chr3_+_49977575 BX648535	-6804	+	BC047022 BC009459 AK092018 AK307140 AX747314 AK074404 TSC_hg19_v1_chr3_-_49967263 BC006299 AK315630 NM_001142501 NM_032355	-17011	-	NM_005778 TSC_hg19_v1_chr3_+_50126351	142015	+	TSC_hg19_v1_chr3_+_50126354 AF091263 AK297249 AK302766 AK297445 AK314032 BC002957 AB208813 AF103802 AF107493 AB586690	142050	+	TSC_hg19_v1_chr3_+_50126425 U23946	142105	+	AK308794|RBM6|10180|RNA binding motif protein 6##AK303371|RBM6|10180|RNA binding motif protein 6##AF091264|RBM6|10180|RNA binding motif protein 6##AK093836|RBM6|10180|RNA binding motif protein 6##AY216800|RBM6|10180|RNA binding motif protein 6##BC030057|RBM6|10180|RNA binding motif protein 6##BC046643|RBM6|10180|RNA binding motif protein 6##AF042857|RBM6|10180|RNA binding motif protein 6##AK291719|RBM6|10180|RNA binding motif protein 6##NM_001167582|RBM6|10180|RNA binding motif protein 6##NM_005777|RBM6|10180|RNA binding motif protein 6##AK298108|RBM6|10180|RNA binding motif protein 6##AF069517|RBM6|10180|RNA binding motif protein 6##AL832236|RBM6|10180|RNA binding motif protein 6##BX648535|RBM6|10180|RNA binding motif protein 6##BC047022|MON1A|84315|MON1 homolog A (yeast)##BC009459|MON1A|84315|MON1 homolog A (yeast)##AK092018|MON1A|84315|MON1 homolog A (yeast)##AK307140|MON1A|84315|MON1 homolog A (yeast)##AK074404|MON1A|84315|MON1 homolog A (yeast)##BC006299|MON1A|84315|MON1 homolog A (yeast)##AK315630|MON1A|84315|MON1 homolog A (yeast)##NM_001142501|MON1A|84315|MON1 homolog A (yeast)##NM_032355|MON1A|84315|MON1 homolog A (yeast)##NM_005778|RBM5|10181|RNA binding motif protein 5##AF091263|RBM5|10181|RNA binding motif protein 5##AK297249|RBM5|10181|RNA binding motif protein 5##AK302766|RBM5|10181|RNA binding motif protein 5##AK297445|RBM5|10181|RNA binding motif protein 5##AK314032|RBM5|10181|RNA binding motif protein 5##BC002957|RBM5|10181|RNA binding motif protein 5##AB208813|RBM5|10181|RNA binding motif protein 5##AF103802|RBM5|10181|RNA binding motif protein 5##AF107493|RBM5|10181|RNA binding motif protein 5##AB586690|RBM5|10181|RNA binding motif protein 5##U23946|RBM5|10181|RNA binding motif protein 5	0.994121	0.0	denovo_WM_7:-40:0.401	denovo_WM_7:-42:0.354
chr1	42216929	42217098	reg1003469.p2	8.736	+	BC034393 X55177 M65199 NM_001956	-266694	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-509177	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-509228	-	TSC_hg19_v1_chr1_-_42384357 BC040942	167329	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	167360	-	TSC_hg19_v1_chr1_-_42501606 BC046120	284616	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	0.995826	0.0	
chr14	61795692	61795818	reg1002294.p1	8.735	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-7228	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-47233	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-47561	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	366435	+	FJ790247 NM_001243084	368584	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	433364	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.995772	0.0	denovo_WM_7:-43:0.983
chr6	31172077	31172227	reg1003775.p2	8.735	+	AM851126 AM851121 AM851123 AM851125 AY730056 FM177952 FM177953 FM177954 FM177955 FM177956 FM177959 FM177960 FM177961 FM177962 FM177963 FM177965 FM177968 GU480808 GU480809 GU480810 GU480811 GU480812 GU480813 GU480815 GU480816 GU480817 GU480818 GU480819 GU480820 GU480821 GU480822 GU480823 GU480824 GU480825 GU480826 GU480827 GU480828 GU480829 GU480830 GU480844 GU480856 GU480886 GU480888 GU480891 GU480897 GU480915 HQ122658 HQ122659 HQ122660 HQ122661 HQ122662 HQ122663 HQ122664 HQ122665 HQ122666 HQ122667 HQ122668 HQ122669 HQ122670 HQ122671 HQ122672 HQ122673 HQ122674 HQ122675 HQ122860 HQ122904 AB528279 HQ258221 HQ258573 BC069246 Z11898 AM851115 AM851118 AM851116 AM851117 AM851119 AM851120 BC117435 BC117437 NM_002701	-33837	-	DQ486515 DQ486516 NM_001173531 NM_203289	-37538	-	TSC_hg19_v1_chr6_+_31126735 S53374	-45351	+	M28207 M24096 M21963 U07230 Z47377 U74387 AJ005199 AJ440716 AJ537578 D49820 D83741 FN662479 M11886 M24031 U06835 M28206 M26712 L20091 CU675811 BC007814 BC010542 AB590141 AF168611 AF196489 AF405691 AJ010748 AJ010749 AM237285 AY732487 D12471 D31817 D38526 D49552 D49819 D50852 D50853 D50854 D64145 D64146 D64147 D64148 D64149 D64150 D64151 D64152 D83029 D83030 D83031 DQ891896 DQ895082 L38251 M26429 M26430 M84171 M84173 M84174 M84386 M99388 M99389 M99390 U06487 U06695 U06696 U09853 U41386 U41420 U57028 U62824 X73518 X76189 X78343 X82122 X83401 X87841 X96582 X97321 X98742 Y09156 Y10520 Y11843 Z15144 Z33459 Z46809 Z46810 Z83247 M28160 X58536 BC002463 X67818 X70856 X70857 TSC_hg19_v1_chr6_-_31239870 BC004489 BC033293 BC008457 M24097 AK130592 AK301283 AK304527 X83394 AK024836 BC041078	67534	-	TSC_hg19_v1_chr6_-_31239888 NM_001243042 NM_002117	67748	-	TSC_hg19_v1_chr6_-_31324569 U18661 M27540 AY221104 U74386 U28759 AF081275 AJ002675 AJ002676 AJ002677 AJ003063 AJ223602 AY040668 AY569160 FN662479 HM989017 HM989018 L42545 L47338 L47986 L48400 L49343 L63544 L76252 L76931 L76933 L76934 L76935 L77114 L79935 L79936 L79937 U06697 U16298 U18789 U32678 U34619 U34810 U43337 Y07710 AJ276427 M62852 M83191 M83193 M83194 M83195 U58110	152497	-	AM851126|POU5F1|5460|POU class 5 homeobox 1##AM851121|POU5F1|5460|POU class 5 homeobox 1##AM851123|POU5F1|5460|POU class 5 homeobox 1##AM851125|POU5F1|5460|POU class 5 homeobox 1##FM177952|POU5F1|5460|POU class 5 homeobox 1##FM177953|POU5F1|5460|POU class 5 homeobox 1##FM177954|POU5F1|5460|POU class 5 homeobox 1##FM177955|POU5F1|5460|POU class 5 homeobox 1##FM177956|POU5F1|5460|POU class 5 homeobox 1##FM177959|POU5F1|5460|POU class 5 homeobox 1##FM177960|POU5F1|5460|POU class 5 homeobox 1##FM177961|POU5F1|5460|POU class 5 homeobox 1##FM177962|POU5F1|5460|POU class 5 homeobox 1##FM177963|POU5F1|5460|POU class 5 homeobox 1##FM177965|POU5F1|5460|POU class 5 homeobox 1##FM177968|POU5F1|5460|POU class 5 homeobox 1##GU480808|POU5F1|5460|POU class 5 homeobox 1##GU480809|POU5F1|5460|POU class 5 homeobox 1##GU480810|POU5F1|5460|POU class 5 homeobox 1##GU480811|POU5F1|5460|POU class 5 homeobox 1##GU480812|POU5F1|5460|POU class 5 homeobox 1##GU480813|POU5F1|5460|POU class 5 homeobox 1##GU480815|POU5F1|5460|POU class 5 homeobox 1##GU480816|POU5F1|5460|POU class 5 homeobox 1##GU480817|POU5F1|5460|POU class 5 homeobox 1##GU480818|POU5F1|5460|POU class 5 homeobox 1##GU480819|POU5F1|5460|POU class 5 homeobox 1##GU480820|POU5F1|5460|POU class 5 homeobox 1##GU480821|POU5F1|5460|POU class 5 homeobox 1##GU480822|POU5F1|5460|POU class 5 homeobox 1##GU480823|POU5F1|5460|POU class 5 homeobox 1##GU480824|POU5F1|5460|POU class 5 homeobox 1##GU480825|POU5F1|5460|POU class 5 homeobox 1##GU480826|POU5F1|5460|POU class 5 homeobox 1##GU480827|POU5F1|5460|POU class 5 homeobox 1##GU480828|POU5F1|5460|POU class 5 homeobox 1##GU480829|POU5F1|5460|POU class 5 homeobox 1##GU480830|POU5F1|5460|POU class 5 homeobox 1##GU480886|POU5F1B|5462|POU class 5 homeobox 1B##GU480888|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##GU480891|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##GU480897|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##GU480915|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##HQ122658|POU5F1|5460|POU class 5 homeobox 1##HQ122659|POU5F1|5460|POU class 5 homeobox 1##HQ122660|POU5F1|5460|POU class 5 homeobox 1##HQ122661|POU5F1|5460|POU class 5 homeobox 1##HQ122662|POU5F1|5460|POU class 5 homeobox 1##HQ122663|POU5F1|5460|POU class 5 homeobox 1##HQ122664|POU5F1|5460|POU class 5 homeobox 1##HQ122665|POU5F1|5460|POU class 5 homeobox 1##HQ122666|POU5F1|5460|POU class 5 homeobox 1##HQ122667|POU5F1|5460|POU class 5 homeobox 1##HQ122668|POU5F1|5460|POU class 5 homeobox 1##HQ122669|POU5F1|5460|POU class 5 homeobox 1##HQ122670|POU5F1|5460|POU class 5 homeobox 1##HQ122671|POU5F1|5460|POU class 5 homeobox 1##HQ122672|POU5F1|5460|POU class 5 homeobox 1##HQ122673|POU5F1|5460|POU class 5 homeobox 1##HQ122674|POU5F1|5460|POU class 5 homeobox 1##HQ122675|POU5F1|5460|POU class 5 homeobox 1##HQ122860|POU5F1P4|645682|POU class 5 homeobox 1 pseudogene 4##HQ258221|POU5F1|5460|POU class 5 homeobox 1##HQ258573|POU5F1|5460|POU class 5 homeobox 1##BC069246|POU5F1|5460|POU class 5 homeobox 1##Z11898|POU5F1|5460|POU class 5 homeobox 1##AM851115|POU5F1|5460|POU class 5 homeobox 1##AM851118|POU5F1|5460|POU class 5 homeobox 1##AM851116|POU5F1|5460|POU class 5 homeobox 1##AM851117|POU5F1|5460|POU class 5 homeobox 1##AM851119|POU5F1|5460|POU class 5 homeobox 1##AM851120|POU5F1|5460|POU class 5 homeobox 1##BC117435|POU5F1|5460|POU class 5 homeobox 1##BC117437|POU5F1|5460|POU class 5 homeobox 1##NM_002701|POU5F1|5460|POU class 5 homeobox 1##DQ486515|POU5F1|5460|POU class 5 homeobox 1##DQ486516|POU5F1|5460|POU class 5 homeobox 1##NM_001173531|POU5F1|5460|POU class 5 homeobox 1##NM_203289|POU5F1|5460|POU class 5 homeobox 1##S53374|TCF19|6941|transcription factor 19##M28207|HLA-C|3107|major histocompatibility complex, class I, C##M24096|HLA-C|3107|major histocompatibility complex, class I, C##M21963|HLA-C|3107|major histocompatibility complex, class I, C##U07230|HLA-C|3107|major histocompatibility complex, class I, C##U74387|HLA-B|3106|major histocompatibility complex, class I, B##AJ005199|HLA-C|3107|major histocompatibility complex, class I, C##AJ440716|HLA-C|3107|major histocompatibility complex, class I, C##AJ537578|HLA-C|3107|major histocompatibility complex, class I, C##D83741|HLA-C|3107|major histocompatibility complex, class I, C##M11886|HLA-C|3107|major histocompatibility complex, class I, C##M24031|HLA-C|3107|major histocompatibility complex, class I, C##M28206|HLA-C|3107|major histocompatibility complex, class I, C##M26712|HLA-C|3107|major histocompatibility complex, class I, C##BC007814|HLA-C|3107|major histocompatibility complex, class I, C##BC010542|HLA-C|3107|major histocompatibility complex, class I, C##AF168611|HLA-C|3107|major histocompatibility complex, class I, C##AF196489|HLA-C|3107|major histocompatibility complex, class I, C##AF405691|HLA-C|3107|major histocompatibility complex, class I, C##AJ010748|HLA-C|3107|major histocompatibility complex, class I, C##AJ010749|HLA-C|3107|major histocompatibility complex, class I, C##AM237285|HLA-C|3107|major histocompatibility complex, class I, C##AY732487|HLA-C|3107|major histocompatibility complex, class I, C##D38526|HLA-C|3107|major histocompatibility complex, class I, C##D49552|HLA-C|3107|major histocompatibility complex, class I, C##D49819|HLA-C|3107|major histocompatibility complex, class I, C##D50852|HLA-C|3107|major histocompatibility complex, class I, C##D50853|HLA-C|3107|major histocompatibility complex, class I, C##D50854|HLA-C|3107|major histocompatibility complex, class I, C##D64145|HLA-C|3107|major histocompatibility complex, class I, C##D64146|HLA-C|3107|major histocompatibility complex, class I, C##D64147|HLA-C|3107|major histocompatibility complex, class I, C##D64148|HLA-C|3107|major histocompatibility complex, class I, C##D64150|HLA-C|3107|major histocompatibility complex, class I, C##D64151|HLA-C|3107|major histocompatibility complex, class I, C##D64152|HLA-C|3107|major histocompatibility complex, class I, C##D83029|HLA-C|3107|major histocompatibility complex, class I, C##D83030|HLA-C|3107|major histocompatibility complex, class I, C##DQ891896|HLA-C|3107|major histocompatibility complex, class I, C##DQ895082|HLA-C|3107|major histocompatibility complex, class I, C##L38251|HLA-C|3107|major histocompatibility complex, class I, C##M26429|HLA-C|3107|major histocompatibility complex, class I, C##M26430|HLA-C|3107|major histocompatibility complex, class I, C##M84171|HLA-C|3107|major histocompatibility complex, class I, C##M84173|HLA-C|3107|major histocompatibility complex, class I, C##M84174|HLA-C|3107|major histocompatibility complex, class I, C##M84386|HLA-C|3107|major histocompatibility complex, class I, C##M99389|HLA-C|3107|major histocompatibility complex, class I, C##M99390|HLA-C|3107|major histocompatibility complex, class I, C##U06695|HLA-C|3107|major histocompatibility complex, class I, C##U06696|HLA-C|3107|major histocompatibility complex, class I, C##U09853|HLA-C|3107|major histocompatibility complex, class I, C##U41386|HLA-C|3107|major histocompatibility complex, class I, C##U41420|HLA-C|3107|major histocompatibility complex, class I, C##U57028|HLA-C|3107|major histocompatibility complex, class I, C##U62824|HLA-C|3107|major histocompatibility complex, class I, C##X76189|HLA-C|3107|major histocompatibility complex, class I, C##X82122|HLA-C|3107|major histocompatibility complex, class I, C##X83401|HLA-B|3106|major histocompatibility complex, class I, B##X97321|HLA-C|3107|major histocompatibility complex, class I, C##X98742|HLA-C|3107|major histocompatibility complex, class I, C##Y10520|HLA-C|3107|major histocompatibility complex, class I, C##Y11843|HLA-C|3107|major histocompatibility complex, class I, C##Z15144|HLA-C|3107|major histocompatibility complex, class I, C##Z33459|HLA-C|3107|major histocompatibility complex, class I, C##Z46809|HLA-C|3107|major histocompatibility complex, class I, C##Z46810|HLA-C|3107|major histocompatibility complex, class I, C##Z83247|HLA-C|3107|major histocompatibility complex, class I, C##M28160|HLA-C|3107|major histocompatibility complex, class I, C##X58536|HLA-C|3107|major histocompatibility complex, class I, C##BC002463|HLA-C|3107|major histocompatibility complex, class I, C##X70856|HLA-C|3107|major histocompatibility complex, class I, C##X70857|HLA-C|3107|major histocompatibility complex, class I, C##BC004489|HLA-C|3107|major histocompatibility complex, class I, C##BC033293|HLA-C|3107|major histocompatibility complex, class I, C##BC008457|HLA-C|3107|major histocompatibility complex, class I, C##M24097|HLA-C|3107|major histocompatibility complex, class I, C##AK130592|HLA-C|3107|major histocompatibility complex, class I, C##AK301283|HLA-C|3107|major histocompatibility complex, class I, C##AK304527|HLA-C|3107|major histocompatibility complex, class I, C##X83394|HLA-C|3107|major histocompatibility complex, class I, C##AK024836|HLA-C|3107|major histocompatibility complex, class I, C##BC041078|HLA-C|3107|major histocompatibility complex, class I, C##NM_001243042|HLA-C|3107|major histocompatibility complex, class I, C##NM_002117|HLA-C|3107|major histocompatibility complex, class I, C##U18661|HLA-B|3106|major histocompatibility complex, class I, B##M27540|HLA-B|3106|major histocompatibility complex, class I, B##AY221104|HLA-B|3106|major histocompatibility complex, class I, B##U74386|HLA-B|3106|major histocompatibility complex, class I, B##U28759|HLA-B|3106|major histocompatibility complex, class I, B##AJ002675|HLA-B|3106|major histocompatibility complex, class I, B##AJ002676|HLA-B|3106|major histocompatibility complex, class I, B##AJ002677|HLA-B|3106|major histocompatibility complex, class I, B##AJ003063|HLA-B|3106|major histocompatibility complex, class I, B##AJ223602|HLA-B|3106|major histocompatibility complex, class I, B##AY040668|HLA-B|3106|major histocompatibility complex, class I, B##AY569160|HLA-B|3106|major histocompatibility complex, class I, B##HM989017|HLA-B|3106|major histocompatibility complex, class I, B##L42545|HLA-B|3106|major histocompatibility complex, class I, B##L47338|HLA-B|3106|major histocompatibility complex, class I, B##L47986|HLA-B|3106|major histocompatibility complex, class I, B##L48400|HLA-B|3106|major histocompatibility complex, class I, B##L49343|HLA-B|3106|major histocompatibility complex, class I, B##L63544|HLA-B|3106|major histocompatibility complex, class I, B##L76252|HLA-B|3106|major histocompatibility complex, class I, B##L76933|HLA-B|3106|major histocompatibility complex, class I, B##L76935|HLA-B|3106|major histocompatibility complex, class I, B##L77114|HLA-C|3107|major histocompatibility complex, class I, C##L79935|HLA-B|3106|major histocompatibility complex, class I, B##L79936|HLA-B|3106|major histocompatibility complex, class I, B##L79937|HLA-B|3106|major histocompatibility complex, class I, B##U06697|HLA-B|3106|major histocompatibility complex, class I, B##U16298|HLA-B|3106|major histocompatibility complex, class I, B##U32678|HLA-B|3106|major histocompatibility complex, class I, B##U34619|HLA-B|3106|major histocompatibility complex, class I, B##U34810|HLA-B|3106|major histocompatibility complex, class I, B##Y07710|HLA-B|3106|major histocompatibility complex, class I, B##AJ276427|HLA-B|3106|major histocompatibility complex, class I, B##M83191|HLA-B|3106|major histocompatibility complex, class I, B##M83193|HLA-B|3106|major histocompatibility complex, class I, B##M83194|HLA-B|3106|major histocompatibility complex, class I, B##M83195|HLA-B|3106|major histocompatibility complex, class I, B##U58110|HLA-B|3106|major histocompatibility complex, class I, B	0.999494	0.0	
chr4	153768117	153768297	reg1001136.p2	8.734	+	TSC_hg19_v1_chr4_+_153701117 AK290472 U52521 BC103759 BC105114 BC105116 BC143675 BC143676 AK096509	-67080	+	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	-67186	+	BC037869 NM_145720	-67304	-	NM_033393 AB051514	95983	+	BC011052 NM_001130067	306062	+	TSC_hg19_v1_chr4_+_154125594 AK308731 NM_015271 AB011089 AF220018	357398	+	AK290472|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##U52521|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC103759|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105114|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105116|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143675|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143676|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK096509|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##NM_033393|FHDC1|85462|FH2 domain containing 1##AB051514|FHDC1|85462|FH2 domain containing 1##BC011052|TRIM2|23321|tripartite motif containing 2##NM_001130067|TRIM2|23321|tripartite motif containing 2##AK308731|TRIM2|23321|tripartite motif containing 2##NM_015271|TRIM2|23321|tripartite motif containing 2##AB011089|TRIM2|23321|tripartite motif containing 2##AF220018|TRIM2|23321|tripartite motif containing 2	1.274191	0.0	denovo_WM_7:71:0.226	denovo_WM_7:86:0.317
chr10	49493771	49493908	reg1003727.p1	8.733	+	CR749241 NM_001018071	-10913	-	BC146955 BC146968 BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556	-286018	-	BC036539 AL050040 NM_001042363 NM_001042364 NM_001042365 NM_001042387 NM_001042395 NM_001042396 NM_001042397 NM_015605 CR933668 BX648913	-665897	-	TSC_hg19_v1_chr10_+_49514722 AK292523	20947	+	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	115833	+	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	319248	-	CR749241|FRMPD2|143162|FERM and PDZ domain containing 2##NM_001018071|FRMPD2|143162|FERM and PDZ domain containing 2##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##BC036539|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AL050040|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042363|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042364|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042365|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042387|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042395|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042396|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042397|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_015605|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##CR933668|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BX648913|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AK292523|MAPK8|5599|mitogen-activated protein kinase 8##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22	0.882617	0.0	denovo_WM_7:-29:0.231	denovo_WM_7:-34:0.226
chr12	104964414	104964531	reg1002912.p2	8.733	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-113385	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-113664	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-113701	+	TSC_hg19_v1_chr12_+_105153261 AF131762	188805	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	357791	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	415618	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.996942	0.0	denovo_WM_7:6:0.841
chr12	69181457	69181637	reg1000701.p2	8.733	+	TSC_hg19_v1_chr12_+_69139964 AF148713 BC030504 BC021103 BC049192 BC008412 CU688882	-41490	+	TSC_hg19_v1_chr12_+_69139955 AK289645 AY358943 NM_018656	-41611	+	TSC_hg19_v1_chr12_+_69080760 AJ295745 NM_020401 AK055629 AK315157 AK094183 BC017167 BC043343	-100784	+	TSC_hg19_v1_chr12_+_69201958 BC009893 BC013887 BC067077 M92424 NM_002392 Z12020	20364	+	TSC_hg19_v1_chr12_+_69201980 AK290341	20445	+	EU076746 EU076747 EU076748 EU076749 TSC_hg19_v1_chr12_+_69202803	21254	+	AF148713|SLC35E3|55508|solute carrier family 35, member E3##BC030504|SLC35E3|55508|solute carrier family 35, member E3##BC021103|SLC35E3|55508|solute carrier family 35, member E3##BC049192|SLC35E3|55508|solute carrier family 35, member E3##BC008412|SLC35E3|55508|solute carrier family 35, member E3##AK289645|SLC35E3|55508|solute carrier family 35, member E3##AY358943|SLC35E3|55508|solute carrier family 35, member E3##NM_018656|SLC35E3|55508|solute carrier family 35, member E3##AJ295745|NUP107|57122|nucleoporin 107kDa##NM_020401|NUP107|57122|nucleoporin 107kDa##AK055629|NUP107|57122|nucleoporin 107kDa##AK315157|NUP107|57122|nucleoporin 107kDa##AK094183|NUP107|57122|nucleoporin 107kDa##BC017167|NUP107|57122|nucleoporin 107kDa##BC043343|NUP107|57122|nucleoporin 107kDa##M92424|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##NM_002392|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##Z12020|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AK290341|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076746|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076747|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076748|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076749|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)	1.016052	0.0	denovo_WM_7:80:0.313	denovo_WM_7:81:0.313	denovo_WM_7:82:0.313
chr11	83000661	83000797	reg1003092.p1	8.731	+	AF271782 NM_021825 BC048795 TSC_hg19_v1_chr11_-_82997434 AK304769 AK315787 BC107755	-3324	-	TSC_hg19_v1_chr11_-_82997032 AB528098 AM393290 AM393494 CU676716 BC067764 AF182412 AF182424 AK055972 BC020783 AK225726 AK292349 BC017771 BC032701 BC014573 AL136791	-3696	-	BX648690 NM_182603 DQ508815 AK095193 BC171752	-95241	+	AK299778 CR933674 NM_001142702	392722	-	AK294375 AK126776 AK295624 NM_001142700	983547	-	AK127150 NM_001206769 TSC_hg19_v1_chr11_-_84028381	1027652	-	AF271782|CCDC90B|60492|coiled-coil domain containing 90B##NM_021825|CCDC90B|60492|coiled-coil domain containing 90B##BC048795|CCDC90B|60492|coiled-coil domain containing 90B##AK304769|CCDC90B|60492|coiled-coil domain containing 90B##AK315787|CCDC90B|60492|coiled-coil domain containing 90B##BC107755|CCDC90B|60492|coiled-coil domain containing 90B##BC067764|CCDC90B|60492|coiled-coil domain containing 90B##AF182412|CCDC90B|60492|coiled-coil domain containing 90B##AF182424|CCDC90B|60492|coiled-coil domain containing 90B##AK055972|CCDC90B|60492|coiled-coil domain containing 90B##BC020783|CCDC90B|60492|coiled-coil domain containing 90B##AK225726|CCDC90B|60492|coiled-coil domain containing 90B##BC017771|CCDC90B|60492|coiled-coil domain containing 90B##BC032701|CCDC90B|60492|coiled-coil domain containing 90B##BC014573|CCDC90B|60492|coiled-coil domain containing 90B##AL136791|CCDC90B|60492|coiled-coil domain containing 90B##BX648690|ANKRD42|338699|ankyrin repeat domain 42##NM_182603|ANKRD42|338699|ankyrin repeat domain 42##DQ508815|ANKRD42|338699|ankyrin repeat domain 42##AK095193|ANKRD42|338699|ankyrin repeat domain 42##BC171752|ANKRD42|338699|ankyrin repeat domain 42##AK299778|DLG2|1740|discs, large homolog 2 (Drosophila)##CR933674|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142702|DLG2|1740|discs, large homolog 2 (Drosophila)##AK294375|DLG2|1740|discs, large homolog 2 (Drosophila)##AK126776|DLG2|1740|discs, large homolog 2 (Drosophila)##AK295624|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142700|DLG2|1740|discs, large homolog 2 (Drosophila)##AK127150|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001206769|DLG2|1740|discs, large homolog 2 (Drosophila)	0.989798	0.0	denovo_WM_7:41:0.236	denovo_WM_7:42:0.236	denovo_WM_7:43:0.236	denovo_WM_7:44:0.236
chr2	65494864	65495006	reg1003170.p1	8.730	+	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-40000	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-40199	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-137594	-	TSC_hg19_v1_chr2_-_65593766 AK299079	98838	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	98963	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	164277	-	NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2	1.978554	0.0	denovo_WM_7:67:0.949	denovo_WM_7:82:0.958
chr14	95970421	95970579	reg1003070.p1	8.728	+	AK131436 BC146604 BX248076 NM_152592	-28396	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	-184317	-	TSC_hg19_v1_chr14_+_95624023 BC040596	-346479	+	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	30515	-	TSC_hg19_v1_chr14_+_96001352 NM_016417	30826	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	30868	+	AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)##BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##NM_016417|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5	0.0	0.0	
chr15	22176049	22176163	reg1003074.p1	8.728	+	NM_207355 BC066981	-92968	-	NM_207355 BC066981	-1104128	-	NM_001145004	-1428993	-	BC136985 NM_001004719	192371	+	BC136597 BC136598 NM_001005241 DQ786223	206339	+	DQ524033 DQ454451 TSC_hg19_v1_chr15_-_22473107 DQ454627 AF343362 EU433867 DQ454583 DQ454461 DQ454478 DQ454710 GQ232839 DQ454494 DQ454810 DQ454920 DQ454517 DQ454648 DQ454831 DQ454837 DQ454839 DQ454830 EF091921 EU350427 GQ232820 GQ232886 DQ454775 EU099074 EU099080 EU099197 DQ454762 AM279532 S79246 FJ385352 FJ385386 FJ385412 U86668 S73132 DQ454486 DQ454484 DQ523962 DQ523967 DQ524021 DQ524117 DQ524132 DQ524138 HM996399 DQ926110 HM995525 AB363221 AJ132847 AJ300792 AY686939 AY941876 AY941978 HM995325 HM995448 HM995452 HM995524 HM995543 HM995544 HM995546 HM995547 HM995794 HM995826 AB063656 AB063670 AB363087 AF062233 AJ244946 AJ245002 AJ245015 AJ245026 AJ245030 AJ279514 AJ279520 AJ279522 AJ579204 AY670752 AY670765 AY670783 AY671055 AY671074 AY671080 AY671081 AY671306 AY671333 AY671362 AY671391 AY671498 AY671678 AY671740 AY671743 AY671757 AY941972 AY941973 AY941975 AY941977 AY941979 DQ431529 DQ431542 HQ689717 U00532 U96389 Z46285 AY686870 AY686907 AY686931 AY944698 AY944714 AY944717 DQ535422 EF178066 EF178072 AY671309 X54445 AY671174 AY671312 AF062120 AF062232 X65905 X65906 X65908 X65909 X65910 Z75399	297116	-	NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##NM_001145004|GOLGA6L6|727832|golgin A6 family-like 6##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##BC136597|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136598|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##NM_001005241|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4	0.989586	0.0	
chr7	27930039	27930210	reg1003350.p2	8.727	+	TSC_hg19_v1_chr7_+_27779811 U33821 BC050358	-150305	+	BC001764 TSC_hg19_v1_chr7_+_27779809	-150315	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	-150349	+	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	290077	-	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	290282	-	L05913 NM_182899	408815	+	U33821|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC050358|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5	0.0	0.0	
chr19	49389529	49389638	reg1003496.p1	8.726	+	DQ891855 EU176641 TSC_hg19_v1_chr19_+_49376488 AB464097 CR457259	-13094	+	TSC_hg19_v1_chr19_+_49375698 BC003067 U83981	-13886	+	AK001361 AK225632 AK296668 AK297615 AK298765 AK311366 TSC_hg19_v1_chr19_+_49375677	-13906	+	U82469 BC026070 NM_003323	12383	-	AK292066 NM_006184	13723	+	TSC_hg19_v1_chr19_+_49403601 AK315422 BX647718 AK303126 AK222805 M96824	14001	+	DQ891855|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##EU176641|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##CR457259|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##BC003067|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##U83981|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK001361|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK225632|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK296668|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK297615|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK298765|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##U82469|TULP2|7288|tubby like protein 2##BC026070|TULP2|7288|tubby like protein 2##NM_003323|TULP2|7288|tubby like protein 2##AK292066|NUCB1|4924|nucleobindin 1##NM_006184|NUCB1|4924|nucleobindin 1##AK315422|NUCB1|4924|nucleobindin 1##BX647718|NUCB1|4924|nucleobindin 1##AK303126|NUCB1|4924|nucleobindin 1##AK222805|NUCB1|4924|nucleobindin 1##M96824|NUCB1|4924|nucleobindin 1	0.998711	0.0	denovo_WM_7:-18:0.450	denovo_WM_7:-19:0.450
chr19	11679217	11679397	reg1001230.p4	8.722	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-9274	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-29648	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-39350	-	X14618 TSC_hg19_v1_chr19_-_11688461	9144	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	9183	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	9223	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.860326	0.0	denovo_WM_7:72:0.432	denovo_WM_7:73:0.428
chr16	57623494	57623626	reg1002354.p1	8.721	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	-46972	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	-47006	+	BC008285 BC009941 NM_033212	-53095	-	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	30095	+	NM_001145770 NM_005682 AK075270 AY358400	30388	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	38894	+	BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56##NM_001145770|GPR56|9289|G protein-coupled receptor 56##NM_005682|GPR56|9289|G protein-coupled receptor 56##AK075270|GPR56|9289|G protein-coupled receptor 56##AY358400|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56	0.998703	0.0	denovo_WM_7:57:0.425	denovo_WM_7:58:0.425
chr20	35503600	35503737	reg1002281.p1	8.721	+	TSC_hg19_v1_chr20_-_35492072 NM_080627	-11534	-	AK126630 NM_199181	-15393	-	TSC_hg19_v1_chr20_-_35444558 AK131491	-59048	-	TSC_hg19_v1_chr20_+_35504544 BC127688 BC130646 BC130648 AK123544 NM_080628 HQ258755	881	+	AB013847 CU690348 TSC_hg19_v1_chr20_-_35580085 BC036450 AK304187 AB208944	76404	-	TSC_hg19_v1_chr20_-_35580112 AK304795 AL050267	76445	-	NM_080627|KIAA0889|140710|KIAA0889##AK126630|KIAA0889|140710|KIAA0889##NM_199181|KIAA0889|140710|KIAA0889##AK131491|KIAA0889|140710|KIAA0889##BC127688|C20orf118|140711|chromosome 20 open reading frame 118##BC130646|C20orf118|140711|chromosome 20 open reading frame 118##BC130648|C20orf118|140711|chromosome 20 open reading frame 118##AK123544|C20orf118|140711|chromosome 20 open reading frame 118##NM_080628|C20orf118|140711|chromosome 20 open reading frame 118##HQ258755|C20orf118|140711|chromosome 20 open reading frame 118##AB013847|SAMHD1|25939|SAM domain and HD domain 1##BC036450|SAMHD1|25939|SAM domain and HD domain 1##AK304187|SAMHD1|25939|SAM domain and HD domain 1##AB208944|SAMHD1|25939|SAM domain and HD domain 1##AK304795|SAMHD1|25939|SAM domain and HD domain 1##AL050267|SAMHD1|25939|SAM domain and HD domain 1	1.06643	0.0	
chr5	150604039	150604173	reg1003404.p1	8.721	+	TSC_hg19_v1_chr5_-_150603654 AK292841 AK298063 AL713742 NM_015621	-426	-	TSC_hg19_v1_chr5_-_150603648 AK225826	-475	-	TSC_hg19_v1_chr5_-_150537341 NM_001155	-66718	-	NM_000405 NM_001167607 TSC_hg19_v1_chr5_+_150632745 AK225978 L01439 M76477 AK312494 X62078 AK298867 BC009273 X61095 CU679281 DQ891914 DQ895098 X16087	28609	+	AK127978 NM_001145017 NM_181774	79223	-	BC101100 BC101101 BC101102 BC101103 AK297682 AY162214 AK122630 AK309575 NM_181776	123013	-	AK292841|CCDC69|26112|coiled-coil domain containing 69##AK298063|CCDC69|26112|coiled-coil domain containing 69##AL713742|CCDC69|26112|coiled-coil domain containing 69##NM_015621|CCDC69|26112|coiled-coil domain containing 69##AK225826|CCDC69|26112|coiled-coil domain containing 69##NM_001155|ANXA6|309|annexin A6##NM_000405|GM2A|2760|GM2 ganglioside activator##NM_001167607|GM2A|2760|GM2 ganglioside activator##L01439|GM2A|2760|GM2 ganglioside activator##M76477|GM2A|2760|GM2 ganglioside activator##AK312494|GM2A|2760|GM2 ganglioside activator##X62078|GM2A|2760|GM2 ganglioside activator##AK298867|GM2A|2760|GM2 ganglioside activator##BC009273|GM2A|2760|GM2 ganglioside activator##X61095|GM2A|2760|GM2 ganglioside activator##DQ891914|GM2A|2760|GM2 ganglioside activator##DQ895098|GM2A|2760|GM2 ganglioside activator##X16087|GM2A|2760|GM2 ganglioside activator##AK127978|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_001145017|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_181774|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##BC101100|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101101|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101102|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101103|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK297682|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AY162214|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK309575|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##NM_181776|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2	0.997759	0.0	denovo_WM_7:9:0.238	denovo_WM_7:10:0.238	denovo_WM_7:11:0.238	denovo_WM_7:12:0.238
chr7	128090577	128090752	reg1003186.p1	8.721	+	TSC_hg19_v1_chr7_-_128050037 AK092452 BC033622 AK054667 AK122994 NM_000883 NM_001102605 NM_001142576 NM_183243	-40627	-	AK131294 TSC_hg19_v1_chr7_-_128049984 CR933672	-40684	-	AK054640 AK293413 AK297943 TSC_hg19_v1_chr7_-_128046013 NM_001142573 NM_001142574 NM_001142575	-44647	-	TSC_hg19_v1_chr7_+_128095931 NM_001098786 NM_013332 AF144755 AK024729 AK222583 BC008573 BC001863 BC093742 BC112183	5302	+	NM_018396 TSC_hg19_v1_chr7_+_128116813 AK302775 BC107586 AK002212 BC064929 BC121115 BC121116 AK299960	26173	+	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	221682	+	AK092452|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC033622|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054667|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK122994|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_000883|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001102605|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142576|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_183243|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK131294|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##CR933672|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054640|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK293413|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK297943|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142573|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142574|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142575|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001098786|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_013332|HILPDA|29923|hypoxia inducible lipid droplet-associated##AF144755|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK024729|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK222583|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC008573|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC001863|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC093742|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC112183|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_018396|METTL2B|55798|methyltransferase like 2B##AK302775|METTL2B|55798|methyltransferase like 2B##BC107586|METTL2B|55798|methyltransferase like 2B##AK002212|METTL2B|55798|methyltransferase like 2B##BC064929|METTL2B|55798|methyltransferase like 2B##BC121115|METTL2B|55798|methyltransferase like 2B##BC121116|METTL2B|55798|methyltransferase like 2B##AK299960|METTL2B|55798|methyltransferase like 2B##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2	0.998137	0.0	denovo_WM_7:92:0.951
chr9	100870314	100870493	reg1003491.p1	8.721	+	TSC_hg19_v1_chr9_+_100819020 NM_018946 AK316608 BC000008 AK001659 BC019315 AF257466 CU676426 DQ892167 DQ895361	-51388	+	TSC_hg19_v1_chr9_+_100745672 Y07569	-124676	+	TSC_hg19_v1_chr9_+_100745652 BC019658 Y07570 BC013003	-124751	+	TSC_hg19_v1_chr9_-_100881503 AB529155 DQ893293 DQ896623 AF220130 AF220131 D50919 NM_014788 NM_033219 BC006333 NM_033220 AK292825	11082	-	TSC_hg19_v1_chr9_-_100881526 AK055833	11141	-	NM_003389	64770	-	NM_018946|NANS|54187|N-acetylneuraminic acid synthase##AK316608|NANS|54187|N-acetylneuraminic acid synthase##BC000008|NANS|54187|N-acetylneuraminic acid synthase##AK001659|NANS|54187|N-acetylneuraminic acid synthase##BC019315|NANS|54187|N-acetylneuraminic acid synthase##AF257466|NANS|54187|N-acetylneuraminic acid synthase##DQ892167|NANS|54187|N-acetylneuraminic acid synthase##DQ895361|NANS|54187|N-acetylneuraminic acid synthase##Y07569|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC019658|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##Y07570|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC013003|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##DQ893293|TRIM14|9830|tripartite motif containing 14##DQ896623|TRIM14|9830|tripartite motif containing 14##AF220130|TRIM14|9830|tripartite motif containing 14##AF220131|TRIM14|9830|tripartite motif containing 14##D50919|TRIM14|9830|tripartite motif containing 14##NM_014788|TRIM14|9830|tripartite motif containing 14##NM_033219|TRIM14|9830|tripartite motif containing 14##BC006333|TRIM14|9830|tripartite motif containing 14##NM_033220|TRIM14|9830|tripartite motif containing 14##AK292825|TRIM14|9830|tripartite motif containing 14##AK055833|TRIM14|9830|tripartite motif containing 14##NM_003389|CORO2A|7464|coronin, actin binding protein, 2A	0.997106	0.0	denovo_WM_7:-30:0.313	denovo_WM_7:-31:0.313	denovo_WM_7:-32:0.313
chr10	74055985	74056165	reg1003176.p2	8.717	+	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	-22251	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-79964	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-80287	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	58603	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	58851	-	AK298347 AK296086 TSC_hg19_v1_chr10_-_74283734 NM_001195519	227644	-	NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK298347|MICU1|10367|mitochondrial calcium uptake 1##AK296086|MICU1|10367|mitochondrial calcium uptake 1##NM_001195519|MICU1|10367|mitochondrial calcium uptake 1	1.737708	0.0	denovo_WM_7:29:0.651	denovo_WM_7:46:0.741
chr2	190627920	190628069	reg1002554.p1	8.717	+	AK314565 NM_022353 AK055441	-57	-	AK126073 NM_144708	-87284	+	TSC_hg19_v1_chr2_+_190539326 BC037215 AK307328 BC047413	-88634	+	NM_000534 NM_001128143 NM_001128144	20816	+	TSC_hg19_v1_chr2_-_190649062 AF151036 AF395704 AK313533 BC005200	21040	-	TSC_hg19_v1_chr2_-_190649075 AK074756 NM_001128150 NM_016467	21104	-	AK314565|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##NM_022353|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##AK055441|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##AK126073|ANKAR|150709|ankyrin and armadillo repeat containing##NM_144708|ANKAR|150709|ankyrin and armadillo repeat containing##BC037215|ANKAR|150709|ankyrin and armadillo repeat containing##AK307328|ANKAR|150709|ankyrin and armadillo repeat containing##BC047413|ANKAR|150709|ankyrin and armadillo repeat containing##NM_000534|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128143|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128144|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AF151036|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF395704|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK313533|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##BC005200|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK074756|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_001128150|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_016467|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)	0.997864	0.0	denovo_WM_7:47:0.881
chr1	234908113	234908258	reg1002387.p2	8.716	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-12411	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-162939	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-164327	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	383904	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	384046	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	416378	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr12	65054458	65054599	reg1003064.p1	8.715	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-50267	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-208635	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-250750	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	98569	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	98631	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	98656	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.0	0.0	
chr5	149866986	149867156	reg1003058.p1	8.715	+	TSC_hg19_v1_chr5_+_149865341 AB209107	-1632	+	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	-37780	-	TSC_hg19_v1_chr5_-_149829249 BC020515	-37827	-	AK292448 NM_001543 U36600	20642	+	TSC_hg19_v1_chr5_+_149980641 AL831818 NM_001166208	113571	+	AK127049 NM_001166209	130134	+	AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##BC020515|RPS14|6208|ribosomal protein S14##AK292448|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##NM_001543|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##U36600|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AL831818|SYNPO|11346|synaptopodin##NM_001166208|SYNPO|11346|synaptopodin##AK127049|SYNPO|11346|synaptopodin##NM_001166209|SYNPO|11346|synaptopodin	0.99917	0.0	
chr2	190563060	190563205	reg1003005.p1	8.714	+	AK126073 NM_144708	-22422	+	TSC_hg19_v1_chr2_+_190539326 BC037215 AK307328 BC047413	-23772	+	NM_019048 AK000759 TSC_hg19_v1_chr2_+_190526184 BC001243	-36961	+	AK314565 NM_022353 AK055441	64805	-	NM_000534 NM_001128143 NM_001128144	85678	+	TSC_hg19_v1_chr2_-_190649062 AF151036 AF395704 AK313533 BC005200	85902	-	AK126073|ANKAR|150709|ankyrin and armadillo repeat containing##NM_144708|ANKAR|150709|ankyrin and armadillo repeat containing##BC037215|ANKAR|150709|ankyrin and armadillo repeat containing##AK307328|ANKAR|150709|ankyrin and armadillo repeat containing##BC047413|ANKAR|150709|ankyrin and armadillo repeat containing##NM_019048|ASNSD1|54529|asparagine synthetase domain containing 1##AK000759|ASNSD1|54529|asparagine synthetase domain containing 1##BC001243|ASNSD1|54529|asparagine synthetase domain containing 1##AK314565|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##NM_022353|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##AK055441|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##NM_000534|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128143|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128144|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AF151036|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF395704|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK313533|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##BC005200|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)	1.278954	0.99696	denovo_WM_7:-13:0.624	denovo_WM_7:-14:0.305	CTCF.p2:25:0.997	denovo_WM_7:-91:0.350
chr4	39659223	39659403	reg1003389.p2	8.714	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-18757	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-129687	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-130138	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	40491	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	320025	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	320280	-	AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.03747	0.0	
chr1	205309010	205309172	reg1003313.p1	8.713	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	-18248	-	AY358192 TSC_hg19_v1_chr1_+_205236667	-72457	+	AK293734 NM_001242925	-111033	+	BC036076 TSC_hg19_v1_chr1_-_205313311	4219	-	AK299227 AK001610 NM_018203 AK096590	16949	-	AB084764 AB084765 AB085610 AB096677 AB096678 AB096679 AB096680 AB096681 AB096682 BC036636 AK302392 NM_001001552 NM_001199050 NM_001199051 NM_001199052	82105	-	AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A##AB084764|LEMD1|93273|LEM domain containing 1##AB084765|LEMD1|93273|LEM domain containing 1##AB085610|LEMD1|93273|LEM domain containing 1##AB096677|LEMD1|93273|LEM domain containing 1##AB096678|LEMD1|93273|LEM domain containing 1##AB096679|LEMD1|93273|LEM domain containing 1##AB096680|LEMD1|93273|LEM domain containing 1##AB096681|LEMD1|93273|LEM domain containing 1##AB096682|LEMD1|93273|LEM domain containing 1##BC036636|LEMD1|93273|LEM domain containing 1##AK302392|LEMD1|93273|LEM domain containing 1##NM_001001552|LEMD1|93273|LEM domain containing 1##NM_001199050|LEMD1|93273|LEM domain containing 1##NM_001199051|LEMD1|93273|LEM domain containing 1##NM_001199052|LEMD1|93273|LEM domain containing 1	1.032389	0.0	denovo_WM_7:49:0.666
chr7	27752991	27753090	reg1003087.p1	8.713	+	TSC_hg19_v1_chr7_-_27702556 AK311650 NM_152740	-50463	-	TSC_hg19_v1_chr7_-_27702469 AF529362 DQ894677 AK316605 BC020167 AB050000 BC032324	-50612	-	AK299188 NM_001989	-470877	+	AK299729 NM_001206901	25951	+	TSC_hg19_v1_chr7_+_27779734 NM_001079864 NM_001206902 NM_006024	26684	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	26735	+	NM_152740|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AF529362|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##DQ894677|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AK316605|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##BC020167|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AB050000|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##BC032324|HIBADH|11112|3-hydroxyisobutyrate dehydrogenase##AK299188|EVX1|2128|even-skipped homeobox 1##NM_001989|EVX1|2128|even-skipped homeobox 1##AK299729|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_001206901|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_001079864|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_001206902|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##NM_006024|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1	0.408903	0.0	denovo_WM_7:36:0.304
chrX	199872	200033	reg1003582.p2	8.712	+	NM_018390 BC064136 BC005028 BC000888 BC032072	-1845	+	None	None	None	None	None	None	AK293506 NM_013239	147737	-	NM_000451 NM_006883 U89331	385126	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	1131632	-	NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2	0.983456	0.0	denovo_WM_7:-15:0.354	denovo_WM_7:-18:0.360
chr6	16131218	16131363	reg1003774.p1	8.711	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-1853	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	-1988	+	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	-468000	-	TSC_hg19_v1_chr6_+_16143281 AK026739	12020	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	107561	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	630407	-	BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1	0.99181	0.0	
chr2	113465874	113465991	reg1002600.p1	8.710	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-62412	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-123743	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	-123894	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	56290	-	NM_000575 BC035169	77040	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	128412	-	NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta	0.997713	0.0	denovo_WM_7:-16:0.238	denovo_WM_7:-17:0.238	denovo_WM_7:-18:0.238	denovo_WM_7:-19:0.238
chrY	149872	150033	reg1003583.p2	8.710	+	NM_018390 BC064136 BC005028 BC000888 BC032072	-1845	+	None	None	None	None	None	None	AK293506 NM_013239	147737	-	NM_000451 NM_006883 U89331	385126	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	1131632	-	NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2	0.983456	0.0	denovo_WM_7:-15:0.354	denovo_WM_7:-18:0.360
chr3	4392617	4392750	reg1003124.p2	8.708	+	TSC_hg19_v1_chr3_+_4345048 AK222734 AK297865 AK302296 AB590082 AF054989 BC011635 BC008931 U80776 AY952295 CU679994	-47620	+	AK307537 NM_001243723 NM_006515 TSC_hg19_v1_chr3_+_4345015	-47675	+	TSC_hg19_v1_chr3_+_3841114 NM_020873	-551584	+	AY208752 AY323910 AK057983 TSC_hg19_v1_chr3_-_4508936 AK302018 AB448737 BC110862	116249	-	TSC_hg19_v1_chr3_-_4508945 AY358092 AK075459	116260	-	AK295240 TSC_hg19_v1_chr3_-_4508953 BC121122 BC121123	116269	-	AK222734|SETMAR|6419|SET domain and mariner transposase fusion gene##AK297865|SETMAR|6419|SET domain and mariner transposase fusion gene##AK302296|SETMAR|6419|SET domain and mariner transposase fusion gene##AF054989|SETMAR|6419|SET domain and mariner transposase fusion gene##BC011635|SETMAR|6419|SET domain and mariner transposase fusion gene##BC008931|SETMAR|6419|SET domain and mariner transposase fusion gene##U80776|SETMAR|6419|SET domain and mariner transposase fusion gene##AY952295|SETMAR|6419|SET domain and mariner transposase fusion gene##AK307537|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_001243723|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_006515|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_020873|LRRN1|57633|leucine rich repeat neuronal 1##AY208752|SUMF1|285362|sulfatase modifying factor 1##AY323910|SUMF1|285362|sulfatase modifying factor 1##AK057983|SUMF1|285362|sulfatase modifying factor 1##AK302018|SUMF1|285362|sulfatase modifying factor 1##AB448737|SUMF1|285362|sulfatase modifying factor 1##BC110862|SUMF1|285362|sulfatase modifying factor 1##AY358092|SUMF1|285362|sulfatase modifying factor 1##AK075459|SUMF1|285362|sulfatase modifying factor 1##AK295240|SUMF1|285362|sulfatase modifying factor 1##BC121122|SUMF1|285362|sulfatase modifying factor 1##BC121123|SUMF1|285362|sulfatase modifying factor 1	0.989599	0.648931	CTCF.p2:-9:0.649	denovo_WM_7:-52:0.617
chr4	128704261	128704404	reg1003562.p1	8.708	+	TSC_hg19_v1_chr4_+_128703491 AY290862 AB023421 EF197155	-740	+	TSC_hg19_v1_chr4_+_128703476 AK027822 AK307464	-856	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	-899	+	NM_001190799 NM_014264 AK314238 BC036023 TSC_hg19_v1_chr4_+_128802063	97707	+	TSC_hg19_v1_chr4_+_128802067 AK303399 AB006972 Y13115 DQ894189 CU690262 AK302858 NM_001190801	97899	+	TSC_hg19_v1_chr4_-_128886304 CU688672 AK294439 AK315596 AK074564	181983	-	AY290862|HSPA4L|22824|heat shock 70kDa protein 4-like##AB023421|HSPA4L|22824|heat shock 70kDa protein 4-like##EF197155|HSPA4L|22824|heat shock 70kDa protein 4-like##AK027822|HSPA4L|22824|heat shock 70kDa protein 4-like##AK307464|HSPA4L|22824|heat shock 70kDa protein 4-like##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_001190799|PLK4|10733|polo-like kinase 4##NM_014264|PLK4|10733|polo-like kinase 4##AK314238|PLK4|10733|polo-like kinase 4##BC036023|PLK4|10733|polo-like kinase 4##AK303399|PLK4|10733|polo-like kinase 4##AB006972|PLK4|10733|polo-like kinase 4##Y13115|PLK4|10733|polo-like kinase 4##DQ894189|PLK4|10733|polo-like kinase 4##AK302858|PLK4|10733|polo-like kinase 4##NM_001190801|PLK4|10733|polo-like kinase 4##AK294439|MFSD8|256471|major facilitator superfamily domain containing 8##AK315596|MFSD8|256471|major facilitator superfamily domain containing 8##AK074564|MFSD8|256471|major facilitator superfamily domain containing 8	0.998994	0.0	denovo_WM_7:10:0.518	denovo_WM_7:11:0.462
chr2	79209899	79210020	reg1002990.p2	8.707	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	-1460541	-	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-3271908	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-3272240	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	42879	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	105174	-	AK307292 NM_002909 TSC_hg19_v1_chr2_+_79347583	137577	+	BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta##AK307292|REG1A|5967|regenerating islet-derived 1 alpha##NM_002909|REG1A|5967|regenerating islet-derived 1 alpha	0.990602	0.0	
chr1	11186198	11186359	reg1001980.p2	8.706	+	TSC_hg19_v1_chr1_-_11159916 AB209236 AB527852 EU832630 EU832705 AK294058 AK296559 BC039901 BC008460 AK308778 X66113 L01457 BC028687 NM_001001998 NM_002685 BC073788	-26387	-	TSC_hg19_v1_chr1_-_11120090 NM_003132	-66192	-	TSC_hg19_v1_chr1_-_11120076 M34338	-66200	-	AK024393 TSC_hg19_v1_chr1_-_11188945	2596	-	AB593027 AK313716 BC001881 NM_021146 AB593026 AY358301	63105	+	TSC_hg19_v1_chr1_-_11322572 L34075 U88966	136284	-	AB209236|EXOSC10|5394|exosome component 10##EU832630|EXOSC10|5394|exosome component 10##EU832705|EXOSC10|5394|exosome component 10##AK294058|EXOSC10|5394|exosome component 10##AK296559|EXOSC10|5394|exosome component 10##BC039901|EXOSC10|5394|exosome component 10##BC008460|EXOSC10|5394|exosome component 10##AK308778|EXOSC10|5394|exosome component 10##X66113|EXOSC10|5394|exosome component 10##L01457|EXOSC10|5394|exosome component 10##BC028687|EXOSC10|5394|exosome component 10##NM_001001998|EXOSC10|5394|exosome component 10##NM_002685|EXOSC10|5394|exosome component 10##BC073788|EXOSC10|5394|exosome component 10##NM_003132|SRM|6723|spermidine synthase##M34338|SRM|6723|spermidine synthase##AB593027|ANGPTL7|10218|angiopoietin-like 7##AK313716|ANGPTL7|10218|angiopoietin-like 7##BC001881|ANGPTL7|10218|angiopoietin-like 7##NM_021146|ANGPTL7|10218|angiopoietin-like 7##AB593026|ANGPTL7|10218|angiopoietin-like 7##AY358301|ANGPTL7|10218|angiopoietin-like 7##L34075|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)##U88966|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)	0.993806	0.0	denovo_WM_7:22:0.809
chr8	8902758	8902903	reg1003399.p1	8.705	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-42325	+	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	-42465	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	-151892	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	105348	-	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	106270	-	TSC_hg19_v1_chr8_+_9413421 BC098394	510575	+	AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.999557	0.0	
chr10	63806369	63806515	reg1004028.p1	8.704	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-145011	+	NM_032199	-145430	+	BC041932 NM_173554	-383724	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	2654	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	222097	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	327601	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.0	0.0	
chr19	8260078	8260258	reg1001811.p6	8.704	+	AB384635 AB053450 BC153882 NM_032447	-47793	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-142221	+	AK292662 NM_001201359 NM_005624	-142523	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	14080	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	113041	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	126089	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.988245	0.0	
chr21	36255004	36255139	reg1003183.p1	8.701	+	S76345 S76346 GU070941 TSC_hg19_v1_chr21_-_36252995	-2135	-	S76350 GU070939 TSC_hg19_v1_chr21_-_36231874	-23235	-	AF448438 AF448439 NM_053277	-213384	+	TSC_hg19_v1_chr21_-_36259250 EU093088	4201	-	AF312386 AF312387 AY004251 TSC_hg19_v1_chr21_-_36259416 S60998	4341	-	L34598 D10570 TSC_hg19_v1_chr21_-_36260304	5126	-	S76345|RUNX1|861|runt-related transcription factor 1##S76346|RUNX1|861|runt-related transcription factor 1##S76350|RUNX1|861|runt-related transcription factor 1##AF448438|CLIC6|54102|chloride intracellular channel 6##AF448439|CLIC6|54102|chloride intracellular channel 6##NM_053277|CLIC6|54102|chloride intracellular channel 6##S60998|RUNX1|861|runt-related transcription factor 1##L34598|RUNX1|861|runt-related transcription factor 1##D10570|RUNX1|861|runt-related transcription factor 1	0.999471	0.0	denovo_WM_7:-75:0.537
chr12	25194353	25194521	reg1003308.p2	8.700	+	BC035880 NM_001101339 BC046192 BC062789	-44025	-	TSC_hg19_v1_chr12_-_25102303 AK056255 NM_001178091 NM_001178092 NM_005504	-92101	-	TSC_hg19_v1_chr12_-_25102021 BX647122 AK128527	-92417	-	NM_001204126 NM_001204127 NM_006152	10743	+	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	11143	+	BC028415 AK297998 AK302235 AK301763 AK093102 AX747924 BC031047 BC047415 BC057795 NM_001082972 NM_001082973 NM_001204101 NM_001204102 NM_018272 AK304602	153626	-	BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##AK056255|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178091|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178092|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_005504|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BX647122|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK128527|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein##BC028415|CASC1|55259|cancer susceptibility candidate 1##AK297998|CASC1|55259|cancer susceptibility candidate 1##AK302235|CASC1|55259|cancer susceptibility candidate 1##AK301763|CASC1|55259|cancer susceptibility candidate 1##AK093102|CASC1|55259|cancer susceptibility candidate 1##BC031047|CASC1|55259|cancer susceptibility candidate 1##BC047415|CASC1|55259|cancer susceptibility candidate 1##BC057795|CASC1|55259|cancer susceptibility candidate 1##NM_001082972|CASC1|55259|cancer susceptibility candidate 1##NM_001082973|CASC1|55259|cancer susceptibility candidate 1##NM_001204101|CASC1|55259|cancer susceptibility candidate 1##NM_001204102|CASC1|55259|cancer susceptibility candidate 1##NM_018272|CASC1|55259|cancer susceptibility candidate 1##AK304602|CASC1|55259|cancer susceptibility candidate 1	0.953013	0.0	denovo_WM_7:-9:0.398	denovo_WM_7:-12:0.313
chr17	73075954	73076103	reg1003038.p1	8.700	+	TSC_hg19_v1_chr17_+_73043325 D79998	-32695	+	TSC_hg19_v1_chr17_+_73043288 BC033329 NM_015353	-32799	+	BC032245 TSC_hg19_v1_chr17_-_73043079	-32949	-	TSC_hg19_v1_chr17_+_73084056 BC009684 NM_004695	8027	+	TSC_hg19_v1_chr17_+_73106069 AK300997 AK310697 BC011728 NM_024585	30026	+	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	51829	-	D79998|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC033329|KCTD2|23510|potassium channel tetramerisation domain containing 2##NM_015353|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC032245|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC009684|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##NM_004695|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##AK300997|ARMC7|79637|armadillo repeat containing 7##BC011728|ARMC7|79637|armadillo repeat containing 7##NM_024585|ARMC7|79637|armadillo repeat containing 7##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic	0.992941	0.0	denovo_WM_7:60:0.314	denovo_WM_7:61:0.314	denovo_WM_7:62:0.314
chr3	185870752	185870884	reg1003468.p2	8.699	+	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	-43962	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	-44472	-	TSC_hg19_v1_chr3_-_185655843 AK315632 NM_001243879 NM_004593	-214940	-	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	209116	-	CU686840 AF161703 BC069478 AK314172 NM_017541	391322	-	TSC_hg19_v1_chr3_-_186285118 AK001422 BC025748	414290	-	BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##AK315632|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_001243879|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_004593|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AF161703|CRYGS|1427|crystallin, gamma S##BC069478|CRYGS|1427|crystallin, gamma S##AK314172|CRYGS|1427|crystallin, gamma S##NM_017541|CRYGS|1427|crystallin, gamma S##AK001422|TBCCD1|55171|TBCC domain containing 1##BC025748|TBCCD1|55171|TBCC domain containing 1	0.997901	0.0	
chr3	42056253	42056395	reg1002931.p2	8.698	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-52765	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-815300	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-815375	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	76509	+	TSC_hg19_v1_chr3_+_42190749 AK294221	134424	+	AL713787 TSC_hg19_v1_chr3_+_42190865	134523	+	BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1	0.985705	0.0	denovo_WM_7:-17:0.909
chr1	82068587	82068737	reg1003471.p1	8.697	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-296735	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-2596235	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-2953164	+	AF104266 AF104938 AF104939 NM_012302	197419	+	AK097722 TSC_hg19_v1_chr1_-_84326308	2257606	-	TSC_hg19_v1_chr1_-_84326677 BC036594	2258014	-	BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.999132	0.0	denovo_WM_7:-68:0.239	denovo_WM_7:-69:0.239	denovo_WM_7:-70:0.239	denovo_WM_7:-71:0.239
chr4	15786680	15786808	reg1003486.p1	8.697	+	TSC_hg19_v1_chr4_+_15779950 AK303169 NM_001775 D84276 AK313268 M34461 BC007964 D84277 DQ893184 EU176777 AK297592	-6773	+	TSC_hg19_v1_chr4_+_15704753 AB175627 AB590680 BT019502	-81985	+	TSC_hg19_v1_chr4_+_15704695 AK312497 BC012095	-82049	+	BC003628 M60047 BC008910 BC018852 AK291307 TSC_hg19_v1_chr4_-_15939972	153216	-	NM_005130	153618	-	AF361936 CU693032 DQ892062 DQ895256 AB529223 BC025720 AB021123 AY358978 NM_031950	178060	-	AK303169|CD38|952|CD38 molecule##NM_001775|CD38|952|CD38 molecule##D84276|CD38|952|CD38 molecule##AK313268|CD38|952|CD38 molecule##M34461|CD38|952|CD38 molecule##BC007964|CD38|952|CD38 molecule##D84277|CD38|952|CD38 molecule##DQ893184|CD38|952|CD38 molecule##EU176777|CD38|952|CD38 molecule##AK297592|CD38|952|CD38 molecule##AB175627|BST1|683|bone marrow stromal cell antigen 1##BT019502|BST1|683|bone marrow stromal cell antigen 1##AK312497|BST1|683|bone marrow stromal cell antigen 1##BC012095|BST1|683|bone marrow stromal cell antigen 1##BC003628|FGFBP1|9982|fibroblast growth factor binding protein 1##M60047|FGFBP1|9982|fibroblast growth factor binding protein 1##BC008910|FGFBP1|9982|fibroblast growth factor binding protein 1##BC018852|FGFBP1|9982|fibroblast growth factor binding protein 1##AK291307|FGFBP1|9982|fibroblast growth factor binding protein 1##NM_005130|FGFBP1|9982|fibroblast growth factor binding protein 1##AF361936|FGFBP2|83888|fibroblast growth factor binding protein 2##DQ892062|FGFBP2|83888|fibroblast growth factor binding protein 2##DQ895256|FGFBP2|83888|fibroblast growth factor binding protein 2##BC025720|FGFBP2|83888|fibroblast growth factor binding protein 2##AB021123|FGFBP2|83888|fibroblast growth factor binding protein 2##AY358978|FGFBP2|83888|fibroblast growth factor binding protein 2##NM_031950|FGFBP2|83888|fibroblast growth factor binding protein 2	0.459476	0.0	denovo_WM_7:-59:0.278
chr7	69272825	69272945	reg1003051.p2	8.697	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-208297	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-208556	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-209049	+	TSC_hg19_v1_chr7_+_70231164 AK296981	958320	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1324903	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2528893	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.999544	0.0	
chr7	969662	969734	reg1000185.p1	8.697	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	-9184	-	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	-53428	+	TSC_hg19_v1_chr7_+_916188 NM_015949	-53495	+	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	24417	-	TSC_hg19_v1_chr7_-_994317 NM_006869	24615	-	TSC_hg19_v1_chr7_-_994377 AJ006422	24765	-	AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1##BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1	0.99831	0.0	
chr22	46884452	46884569	reg1003438.p2	8.696	+	TSC_hg19_v1_chr22_+_46731810 AK303020	-152700	+	TSC_hg19_v1_chr22_+_46731615 AB178028 AK001002 AK295173 AK290712 BC066593 BC080631 CR456445 BC027991 BC012076 AB463324 CU013043 CU013331	-152881	+	NM_018006 AY062123 DQ309998 DQ309999 DQ310000	-153201	+	AF231024 NM_014246 TSC_hg19_v1_chr22_-_46933142	48604	-	CR456470 NM_015124 BC129837 AB463563 CU013020 CU013308	138166	+	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	249569	-	AK303020|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AB178028|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK001002|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK295173|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK290712|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC066593|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC080631|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CR456445|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC027991|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC012076|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013043|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013331|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##NM_018006|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AY062123|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ309998|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ309999|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ310000|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AF231024|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##NM_014246|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##CR456470|GRAMD4|23151|GRAM domain containing 4##NM_015124|GRAMD4|23151|GRAM domain containing 4##BC129837|GRAMD4|23151|GRAM domain containing 4##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase	0.864534	0.0	denovo_WM_7:58:0.586
chr3	37254613	37254723	reg1003330.p2	8.694	+	TSC_hg19_v1_chr3_-_37217813 BC017703 BC053668 AK291514 NM_001134369 NM_006309 NM_017724	-36881	-	BX648844 NM_001167617 NM_001167618 NM_001167619 AK295359 AK298583 AK316074 AK298324 AK311365 AK302807	-219366	+	TSC_hg19_v1_chr3_+_37035008 BC006850 U07418 DQ648888 U07343 AK316264 AK312609 AK222810 AB527828 EU176254 EU176562 AY517558 AK311326 AB209848	-219645	+	TSC_hg19_v1_chr3_+_37284761 BC045543 NM_001172713 NM_002078 BC050444 AK290550 BC023648 AK300192 AK307429 AB209693 U41740 X82834	30095	+	NM_178339 NM_178342 AJ493604 AJ493603	186346	+	TSC_hg19_v1_chr3_+_37493631 BC030198 D25303 NM_002207 L24158	239086	+	BC053668|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##AK291514|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_001134369|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_006309|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_017724|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##BX648844|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167617|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167618|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167619|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK295359|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298583|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316074|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298324|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311365|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK302807|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BC006850|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##U07418|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##DQ648888|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##U07343|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316264|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK312609|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK222810|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##EU176254|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##EU176562|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AY517558|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311326|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AB209848|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BC045543|GOLGA4|2803|golgin A4##NM_001172713|GOLGA4|2803|golgin A4##NM_002078|GOLGA4|2803|golgin A4##BC050444|GOLGA4|2803|golgin A4##AK290550|GOLGA4|2803|golgin A4##BC023648|GOLGA4|2803|golgin A4##AK300192|GOLGA4|2803|golgin A4##AK307429|GOLGA4|2803|golgin A4##AB209693|GOLGA4|2803|golgin A4##U41740|GOLGA4|2803|golgin A4##X82834|GOLGA4|2803|golgin A4##NM_178339|C3orf35|339883|chromosome 3 open reading frame 35##NM_178342|C3orf35|339883|chromosome 3 open reading frame 35##AJ493604|C3orf35|339883|chromosome 3 open reading frame 35##AJ493603|C3orf35|339883|chromosome 3 open reading frame 35##BC030198|ITGA9|3680|integrin, alpha 9##D25303|ITGA9|3680|integrin, alpha 9##NM_002207|ITGA9|3680|integrin, alpha 9##L24158|ITGA9|3680|integrin, alpha 9	0.996888	0.99902	CTCF.p2:6:0.999
chr1	79085923	79086103	reg1002877.p2	8.693	+	NM_000959 NM_001039585 AK292845 AK312816 AY485530 L24470 BC112965 AF004021	-129229	+	TSC_hg19_v1_chr1_+_78511749 AK225941 AB073737 AB528004 CU690284	-574251	+	BC036075 NM_017655 TSC_hg19_v1_chr1_+_78511713	-574350	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	118	+	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	29485	+	BC025721 AY358360 AK292894 AK313738 NM_022159	386414	-	NM_000959|PTGFR|5737|prostaglandin F receptor (FP)##NM_001039585|PTGFR|5737|prostaglandin F receptor (FP)##AK292845|PTGFR|5737|prostaglandin F receptor (FP)##AK312816|PTGFR|5737|prostaglandin F receptor (FP)##AY485530|PTGFR|5737|prostaglandin F receptor (FP)##L24470|PTGFR|5737|prostaglandin F receptor (FP)##BC112965|PTGFR|5737|prostaglandin F receptor (FP)##AF004021|PTGFR|5737|prostaglandin F receptor (FP)##AK225941|GIPC2|54810|GIPC PDZ domain containing family, member 2##AB073737|GIPC2|54810|GIPC PDZ domain containing family, member 2##BC036075|GIPC2|54810|GIPC PDZ domain containing family, member 2##NM_017655|GIPC2|54810|GIPC PDZ domain containing family, member 2##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1	0.982585	0.0	denovo_WM_7:-68:0.862
chr2	70484616	70484749	reg1003236.p1	8.691	+	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	-8963	-	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	-66561	-	TSC_hg19_v1_chr2_+_70314983 BC013020	-169684	+	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	568	+	CR456918 AB464221 BC071880 TSC_hg19_v1_chr2_-_70520827 BC070166 BC066302 BC000070	36129	-	TSC_hg19_v1_chr2_-_70520848 X85373 BC022432 NM_003096 BC106055	36183	-	BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1##CR456918|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC071880|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC070166|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC066302|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC000070|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##X85373|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC022432|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##NM_003096|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G##BC106055|SNRPG|6637|small nuclear ribonucleoprotein polypeptide G	0.998965	0.302907	CTCF.p2:-33:0.303
chr1	198634056	198634236	reg1002314.p2	8.689	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-25816	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-25921	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-25973	+	TSC_hg19_v1_chr1_-_198906559 EF413001	272401	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1362723	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1377578	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	1.032601	0.0	
chr15	44512045	44512165	reg1003162.p1	8.689	+	AK090572 AX746516 TSC_hg19_v1_chr15_-_44487470	-24636	-	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	-24755	-	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	-392918	+	TSC_hg19_v1_chr15_+_44580919 NM_138423 NM_177974 BC012124	68794	+	AK098265 TSC_hg19_v1_chr15_+_44580937	68836	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	68854	+	AK090572|FRMD5|84978|FERM domain containing 5##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5##NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##NM_138423|CASC4|113201|cancer susceptibility candidate 4##NM_177974|CASC4|113201|cancer susceptibility candidate 4##BC012124|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4	0.984392	0.422495	CTCF.p2:-22:0.422	denovo_WM_7:47:0.227	denovo_WM_7:48:0.227	denovo_WM_7:49:0.227	denovo_WM_7:50:0.227
chr14	93700569	93700643	reg1000129.p2	8.687	+	TSC_hg19_v1_chr14_+_93673628 AB590826 BC051819 BX248249	-26972	+	BC017013 TSC_hg19_v1_chr14_+_93673625	-26982	+	TSC_hg19_v1_chr14_+_93673600 BC015046 AK315492	-27010	+	TSC_hg19_v1_chr14_-_93799368 AB040958 AK001510	98759	-	TSC_hg19_v1_chr14_-_93799376 AK291422 BC141850 BX248762 NM_001002860 NM_018167 BC047071	98798	-	AK125327 NM_020818	98958	+	BC051819|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BX248249|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC017013|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC015046|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AK315492|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AB040958|BTBD7|55727|BTB (POZ) domain containing 7##AK001510|BTBD7|55727|BTB (POZ) domain containing 7##AK291422|BTBD7|55727|BTB (POZ) domain containing 7##BC141850|BTBD7|55727|BTB (POZ) domain containing 7##BX248762|BTBD7|55727|BTB (POZ) domain containing 7##NM_001002860|BTBD7|55727|BTB (POZ) domain containing 7##NM_018167|BTBD7|55727|BTB (POZ) domain containing 7##BC047071|BTBD7|55727|BTB (POZ) domain containing 7##AK125327|UNC79|57578|unc-79 homolog (C. elegans)##NM_020818|UNC79|57578|unc-79 homolog (C. elegans)	0.997236	0.0	
chr10	119375727	119375879	reg1004219.p1	8.686	+	TSC_hg19_v1_chr10_+_119302713 AB463605	-73060	+	AF301598 NM_001165924 NM_004098	-73848	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-73887	-	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	430241	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	430627	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	726021	-	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A	0.042701	0.0	
chr2	160106584	160106718	reg1002521.p1	8.686	+	TSC_hg19_v1_chr2_+_159825151 BC037329 NM_001145909 NM_033394 AK128859	-281504	+	AY324399 NM_001017920 AF086541 BC140719 BC127682 BC127683	-454816	+	TSC_hg19_v1_chr2_+_159313484 NM_001005476 NM_003628 BC048013 X81889 BC050308 BC041163	-793068	+	AK093494 AX748164 NM_152528 AK129983 NM_001128213 TSC_hg19_v1_chr2_-_160143234 BC029520 NM_001128212	36497	-	AK127551 BC107570 TSC_hg19_v1_chr2_-_160472070	365363	-	BX647250 AL834381 TSC_hg19_v1_chr2_-_160473021 NM_013450 AB040909	366368	-	BC037329|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##NM_001145909|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##NM_033394|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##AK128859|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##AY324399|DAPL1|92196|death associated protein-like 1##NM_001017920|DAPL1|92196|death associated protein-like 1##AF086541|DAPL1|92196|death associated protein-like 1##BC140719|DAPL1|92196|death associated protein-like 1##BC127682|DAPL1|92196|death associated protein-like 1##BC127683|DAPL1|92196|death associated protein-like 1##NM_001005476|PKP4|8502|plakophilin 4##NM_003628|PKP4|8502|plakophilin 4##BC048013|PKP4|8502|plakophilin 4##X81889|PKP4|8502|plakophilin 4##BC050308|PKP4|8502|plakophilin 4##BC041163|PKP4|8502|plakophilin 4##AK093494|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_152528|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##AK129983|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128213|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BC029520|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128212|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##AK127551|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BC107570|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BX647250|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AL834381|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##NM_013450|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AB040909|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B	0.992048	0.0	
chr8	103595665	103595781	reg1002805.p1	8.686	+	NM_024410 AK315276 BC104456 BC104457	-31862	+	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	-170812	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-344550	-	BC011538 NM_001032282 S81439	70369	-	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	72209	-	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	280636	-	NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1	0.998711	0.0	denovo_WM_7:-47:0.450	denovo_WM_7:-48:0.450
chr2	233807573	233807714	reg1002853.p1	8.683	+	TSC_hg19_v1_chr2_-_233792866 AK297390 NM_001114090 BC073962	-14784	-	TSC_hg19_v1_chr2_+_233740495 BC049848 BC035093	-67131	+	AY358535 NM_206895 BC130307 BC130309	-72649	+	TSC_hg19_v1_chr2_-_233877913 AK298315	70264	-	TSC_hg19_v1_chr2_-_233877933 BC031573 NM_019850 AK025225 AK300953	70307	-	BC069151 BC107053 NM_005383	89738	+	AK297390|NGEF|25791|neuronal guanine nucleotide exchange factor##NM_001114090|NGEF|25791|neuronal guanine nucleotide exchange factor##BC073962|NGEF|25791|neuronal guanine nucleotide exchange factor##BC049848|C2orf82|389084|chromosome 2 open reading frame 82##BC035093|C2orf82|389084|chromosome 2 open reading frame 82##AY358535|C2orf82|389084|chromosome 2 open reading frame 82##NM_206895|C2orf82|389084|chromosome 2 open reading frame 82##BC130307|C2orf82|389084|chromosome 2 open reading frame 82##BC130309|C2orf82|389084|chromosome 2 open reading frame 82##AK298315|NGEF|25791|neuronal guanine nucleotide exchange factor##BC031573|NGEF|25791|neuronal guanine nucleotide exchange factor##NM_019850|NGEF|25791|neuronal guanine nucleotide exchange factor##AK300953|NGEF|25791|neuronal guanine nucleotide exchange factor##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)	0.992917	0.0	
chr4	166153951	166154131	reg1003414.p1	8.682	+	NM_001161521 NM_001161522 AK294103 BX647776	-22863	+	TSC_hg19_v1_chr4_+_166128825 BC036468 AF059569 AK315372 DQ893638 DQ895588 CU690356	-25116	+	NM_007246 TSC_hg19_v1_chr4_+_166128778 BC022503	-25258	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	94814	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	146116	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	640413	+	NM_001161521|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##NM_001161522|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##AK294103|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BX647776|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BC036468|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##AF059569|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##AK315372|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##DQ893638|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##DQ895588|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##NM_007246|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BC022503|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1	1.014128	0.0	
chr17	4631520	4631668	reg1003338.p1	8.681	+	TSC_hg19_v1_chr17_+_4613946 BC007427 BC067368 AF106941 CR749218 AB209786 AK290951 AK297181 BC095450 DQ893226 DQ896556 EU176778 AB527599 CR450310 DQ664180 EU883572 Z11501 BC039066	-17616	+	TSC_hg19_v1_chr17_+_4613926 NM_004313 NM_199004 AK297059 AK097542	-17740	+	TSC_hg19_v1_chr17_-_4607431 AK299084 NM_014389	-24063	-	BC070377 NM_001001683 TSC_hg19_v1_chr17_+_4634722 AF161414	3142	+	AF337812 AB463490 CU676014 AF275260 TSC_hg19_v1_chr17_-_4643066 BC044930 AK292114 AY358909 AF301016 AK027389	11296	-	TSC_hg19_v1_chr17_-_4643224 BC017588 AK315017 NM_001100812 NM_022059	11625	-	BC007427|ARRB2|409|arrestin, beta 2##BC067368|ARRB2|409|arrestin, beta 2##AF106941|ARRB2|409|arrestin, beta 2##CR749218|ARRB2|409|arrestin, beta 2##AB209786|ARRB2|409|arrestin, beta 2##AK290951|ARRB2|409|arrestin, beta 2##AK297181|ARRB2|409|arrestin, beta 2##BC095450|ARRB2|409|arrestin, beta 2##DQ893226|ARRB2|409|arrestin, beta 2##DQ896556|ARRB2|409|arrestin, beta 2##EU176778|ARRB2|409|arrestin, beta 2##CR450310|ARRB2|409|arrestin, beta 2##DQ664180|ARRB2|409|arrestin, beta 2##EU883572|ARRB2|409|arrestin, beta 2##Z11501|ARRB2|409|arrestin, beta 2##BC039066|ARRB2|409|arrestin, beta 2##NM_004313|ARRB2|409|arrestin, beta 2##NM_199004|ARRB2|409|arrestin, beta 2##AK297059|ARRB2|409|arrestin, beta 2##AK097542|ARRB2|409|arrestin, beta 2##AK299084|PELP1|27043|proline, glutamate and leucine rich protein 1##NM_014389|PELP1|27043|proline, glutamate and leucine rich protein 1##BC070377|MED11|400569|mediator complex subunit 11##NM_001001683|MED11|400569|mediator complex subunit 11##AF161414|MED11|400569|mediator complex subunit 11##AF337812|CXCL16|58191|chemokine (C-X-C motif) ligand 16##AF275260|CXCL16|58191|chemokine (C-X-C motif) ligand 16##BC044930|CXCL16|58191|chemokine (C-X-C motif) ligand 16##AK292114|CXCL16|58191|chemokine (C-X-C motif) ligand 16##AY358909|CXCL16|58191|chemokine (C-X-C motif) ligand 16##AF301016|CXCL16|58191|chemokine (C-X-C motif) ligand 16##AK027389|CXCL16|58191|chemokine (C-X-C motif) ligand 16##BC017588|CXCL16|58191|chemokine (C-X-C motif) ligand 16##AK315017|CXCL16|58191|chemokine (C-X-C motif) ligand 16##NM_001100812|CXCL16|58191|chemokine (C-X-C motif) ligand 16##NM_022059|CXCL16|58191|chemokine (C-X-C motif) ligand 16	0.999818	0.0	denovo_WM_7:-16:0.419	denovo_WM_7:-17:0.419
chr17	26368554	26368731	reg1000526.p2	8.679	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-148251	-	BC130283 BC144126 U05810 L09210 X73029 AF068236 AK304252 NM_000625 TSC_hg19_v1_chr17_-_26127556	-241127	-	U31511 TSC_hg19_v1_chr17_-_26127402	-241244	-	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	1011	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	1359	+	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	277551	+	AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##BC130283|NOS2|4843|nitric oxide synthase 2, inducible##BC144126|NOS2|4843|nitric oxide synthase 2, inducible##U05810|NOS2|4843|nitric oxide synthase 2, inducible##L09210|NOS2|4843|nitric oxide synthase 2, inducible##X73029|NOS2|4843|nitric oxide synthase 2, inducible##AF068236|NOS2|4843|nitric oxide synthase 2, inducible##AK304252|NOS2|4843|nitric oxide synthase 2, inducible##NM_000625|NOS2|4843|nitric oxide synthase 2, inducible##U31511|NOS2|4843|nitric oxide synthase 2, inducible##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK024686|NLK|51701|nemo-like kinase##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97	0.0	0.0	
chr14	38542917	38543053	reg1003271.p2	8.677	+	TSC_hg19_v1_chr14_-_38064444 NM_004496	-478521	-	TSC_hg19_v1_chr14_-_38064316 AK313785	-478669	-	AB463645 CU689794 AM392863 AM393239 AM393310 AM393369 TSC_hg19_v1_chr14_-_38064234 BC033890	-478779	-	TSC_hg19_v1_chr14_+_38677186 BX248780 NM_001049	134209	+	AK290868 TSC_hg19_v1_chr14_+_38678303 BC035618	135315	+	AB384936 DQ893328 DQ896644 TSC_hg19_v1_chr14_+_38678642	135634	+	NM_004496|FOXA1|3169|forkhead box A1##AK313785|FOXA1|3169|forkhead box A1##AM392863|FOXA1|3169|forkhead box A1##AM393239|FOXA1|3169|forkhead box A1##AM393310|FOXA1|3169|forkhead box A1##AM393369|FOXA1|3169|forkhead box A1##BC033890|FOXA1|3169|forkhead box A1##BX248780|SSTR1|6751|somatostatin receptor 1##NM_001049|SSTR1|6751|somatostatin receptor 1##AK290868|SSTR1|6751|somatostatin receptor 1##BC035618|SSTR1|6751|somatostatin receptor 1##DQ893328|SSTR1|6751|somatostatin receptor 1##DQ896644|SSTR1|6751|somatostatin receptor 1	1.033641	0.0	
chr21	39640273	39640451	reg1002765.p1	8.677	+	D87291 NM_170736 AK292812	-11433	+	BC013327 NM_002243	-11699	+	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	-146961	-	NM_170737	4066	+	AB489170 AM392572 CU691828 EU446470 AK304662 AK303518 BC040168 AK300395 NM_001136155 NM_182918	230003	-	M21535 NM_001243429	316483	-	D87291|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_170736|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AK292812|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##NM_170737|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AM392572|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##EU446470|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK304662|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK303518|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##BC040168|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK300395|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_001136155|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_182918|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##M21535|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_001243429|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)	0.0	0.0	
chr18	31419516	31419666	reg1003730.p1	8.675	+	AB051500 TSC_hg19_v1_chr18_+_31319257	-100385	+	NM_030632 AK131454	-261032	+	BX648108 TSC_hg19_v1_chr18_-_31158297	-261362	-	AK296539 NM_001198549	208975	-	NM_001198547	382842	-	AK297185 BC000313 TSC_hg19_v1_chr18_-_31803319	383652	-	AB051500|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_030632|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK131454|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK296539|NOL4|8715|nucleolar protein 4##NM_001198549|NOL4|8715|nucleolar protein 4##NM_001198547|NOL4|8715|nucleolar protein 4##AK297185|NOL4|8715|nucleolar protein 4##BC000313|NOL4|8715|nucleolar protein 4	0.866524	0.971555	CTCF.p2:18:0.972	denovo_WM_7:-38:0.609	denovo_WM_7:-39:0.233
chr19	46296294	46296428	reg1002998.p1	8.673	+	TSC_hg19_v1_chr19_-_46296053 NM_004943	-430	-	L19267 TSC_hg19_v1_chr19_-_46295709	-683	-	TSC_hg19_v1_chr19_-_46285763 BC026328 NM_001081560 NM_001081562 NM_004409	-10578	-	BC057785 AB587490 AM393487 BC146683 BC136351 BC136352 BC144018 AK098837 AK223347 AL136761 NM_030785	22157	-	AF049526 TSC_hg19_v1_chr19_-_46366406 Y10931 AB210010 BC030214 AK300252 BX649165 AK130602 NM_004819	70083	-	BC016024 NM_004497 TSC_hg19_v1_chr19_+_46367583 AK223473 AB464526 BT006720 CU677549 L12141	71254	+	NM_004943|DMWD|1762|dystrophia myotonica, WD repeat containing##L19267|DMWD|1762|dystrophia myotonica, WD repeat containing##BC026328|DMPK|1760|dystrophia myotonica-protein kinase##NM_001081560|DMPK|1760|dystrophia myotonica-protein kinase##NM_001081562|DMPK|1760|dystrophia myotonica-protein kinase##NM_004409|DMPK|1760|dystrophia myotonica-protein kinase##BC057785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AM393487|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC146683|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136351|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136352|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC144018|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK098837|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK223347|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AL136761|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##NM_030785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AF049526|SYMPK|8189|symplekin##Y10931|SYMPK|8189|symplekin##AB210010|SYMPK|8189|symplekin##BC030214|SYMPK|8189|symplekin##AK300252|SYMPK|8189|symplekin##BX649165|SYMPK|8189|symplekin##AK130602|SYMPK|8189|symplekin##NM_004819|SYMPK|8189|symplekin##BC016024|FOXA3|3171|forkhead box A3##NM_004497|FOXA3|3171|forkhead box A3##AK223473|FOXA3|3171|forkhead box A3##BT006720|FOXA3|3171|forkhead box A3##L12141|FOXA3|3171|forkhead box A3	0.998642	0.0	denovo_WM_7:0:0.913
chrX	48795926	48796098	reg1003429.p1	8.670	+	U77735 BC018111 AK312745 TSC_hg19_v1_chrX_-_48776302 AK290931 NM_006875	-19665	-	D84454 NM_001042498	-26778	-	CR450287 D88146 NM_005660 AK225508 AK290284 AK293415 AK293419 AK298484 AK299748 TSC_hg19_v1_chrX_-_48768926 BC035747 NM_001032289 AK292816	-27081	-	TSC_hg19_v1_chrX_-_48814831 BC028225	18793	-	TSC_hg19_v1_chrX_-_48814870 BC009917 NM_001136157 NM_001136158 NM_017602	18862	-	TSC_hg19_v1_chrX_-_48815168 BC098440	19119	-	U77735|PIM2|11040|pim-2 oncogene##BC018111|PIM2|11040|pim-2 oncogene##AK312745|PIM2|11040|pim-2 oncogene##AK290931|PIM2|11040|pim-2 oncogene##NM_006875|PIM2|11040|pim-2 oncogene##D84454|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001042498|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##CR450287|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D88146|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_005660|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK225508|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK290284|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293415|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293419|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK298484|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK299748|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC035747|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001032289|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK292816|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC028225|OTUD5|55593|OTU domain containing 5##BC009917|OTUD5|55593|OTU domain containing 5##NM_001136157|OTUD5|55593|OTU domain containing 5##NM_001136158|OTUD5|55593|OTU domain containing 5##NM_017602|OTUD5|55593|OTU domain containing 5##BC098440|OTUD5|55593|OTU domain containing 5	0.988992	0.015031	denovo_WM_7:-38:0.820
chr3	193848996	193849113	reg1002468.p1	8.668	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-537889	+	TSC_hg19_v1_chr3_+_193311006 BC043443 BC075805 AB011139	-537987	+	TSC_hg19_v1_chr3_+_193310928 NM_015560 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837	-538099	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	4879	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	4901	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	223020	-	BC043443|OPA1|4976|optic atrophy 1 (autosomal dominant)##BC075805|OPA1|4976|optic atrophy 1 (autosomal dominant)##AB011139|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_015560|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130831|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130832|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130833|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130834|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130835|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130836|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130837|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2	0.271045	0.0	
chr1	51970731	51970875	reg1002618.p1	8.666	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-83037	-	AF007170 NM_001144832	-160065	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-174571	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	14120	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	14221	-	NM_024586 NM_148906 NM_148908 NM_148909	111742	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.964684	0.0	denovo_WM_7:-5:0.782
chr3	195908718	195908833	reg1002414.p1	8.666	+	TSC_hg19_v1_chr3_-_195808999 NM_001128148	-99759	-	TSC_hg19_v1_chr3_-_195808984 M11507	-99792	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	-99814	-	BC034801 BC022078 NM_001039617 AK122907	29506	-	AK172837 NM_152672 TSC_hg19_v1_chr3_+_195943404 AK300996	34619	+	L28957 TSC_hg19_v1_chr3_-_196014549 AK309300 AK313450	105760	-	NM_001128148|TFRC|7037|transferrin receptor (p90, CD71)##M11507|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)##BC034801|ZDHHC19|131540|zinc finger, DHHC-type containing 19##BC022078|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001039617|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK122907|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK172837|OSTalpha|200931|organic solute transporter alpha##NM_152672|OSTalpha|200931|organic solute transporter alpha##AK300996|OSTalpha|200931|organic solute transporter alpha##L28957|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309300|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK313450|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha	0.997866	0.0	denovo_WM_7:-16:0.449	denovo_WM_7:-17:0.449
chr13	87911881	87912021	reg1002481.p1	8.665	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-1538512	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-3455451	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-3455526	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	412918	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	4138953	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	5967476	+	BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6	1.963652	0.0	denovo_WM_7:8:0.295	denovo_WM_7:9:0.243	denovo_WM_7:10:0.220	denovo_WM_7:11:0.218	denovo_WM_7:26:0.824
chr10	1038421	1038601	reg1003212.p1	8.663	+	TSC_hg19_v1_chr10_+_1034373 BC008683 BC021243 AF120334 BC038975 AK001548 AK097093 AK222861 AK295231 AF325353 BC033784 AK302219	-4113	+	TSC_hg19_v1_chr10_+_1034348 AK001552 NM_012341	-4170	+	AK130873 TSC_hg19_v1_chr10_-_1034282	-4212	-	BC017778 AK056950 NM_033261	33286	-	TSC_hg19_v1_chr10_-_1094827 X17025 AK222875 BC107893	56322	-	AK311110 TSC_hg19_v1_chr10_-_1094867	56359	-	BC008683|GTPBP4|23560|GTP binding protein 4##BC021243|GTPBP4|23560|GTP binding protein 4##AF120334|GTPBP4|23560|GTP binding protein 4##BC038975|GTPBP4|23560|GTP binding protein 4##AK001548|GTPBP4|23560|GTP binding protein 4##AK097093|GTPBP4|23560|GTP binding protein 4##AK222861|GTPBP4|23560|GTP binding protein 4##AK295231|GTPBP4|23560|GTP binding protein 4##AF325353|GTPBP4|23560|GTP binding protein 4##BC033784|GTPBP4|23560|GTP binding protein 4##AK302219|GTPBP4|23560|GTP binding protein 4##AK001552|GTPBP4|23560|GTP binding protein 4##NM_012341|GTPBP4|23560|GTP binding protein 4##AK130873|LOC100288619|100288619|uncharacterized LOC100288619##BC017778|IDI2|91734|isopentenyl-diphosphate delta isomerase 2##AK056950|IDI2|91734|isopentenyl-diphosphate delta isomerase 2##NM_033261|IDI2|91734|isopentenyl-diphosphate delta isomerase 2##X17025|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AK222875|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##BC107893|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AK311110|IDI1|3422|isopentenyl-diphosphate delta isomerase 1	0.044032	0.0	
chr1	20498162	20498265	reg1002632.p2	8.663	+	TSC_hg19_v1_chr1_+_20480706 BC041651	-17450	+	AK093645 AX748240 BX647458 NM_022819 AB528809	-32345	+	AB590095 AM392918 AM392954 AM392977 AM393597 AM393824 BC025706 NM_012400 AF112982 AY358606 AK290406 AF188625 AK310156 AK311903 AK301396	-52189	-	NM_001105572	3473	-	BC047428 NM_152376 BX648631 AK058158 TSC_hg19_v1_chr1_+_20512591	14371	+	NM_001039500 AK125833	119207	+	AK093645|PLA2G2F|64600|phospholipase A2, group IIF##BX647458|PLA2G2F|64600|phospholipase A2, group IIF##NM_022819|PLA2G2F|64600|phospholipase A2, group IIF##AM392918|PLA2G2D|26279|phospholipase A2, group IID##AM392954|PLA2G2D|26279|phospholipase A2, group IID##AM392977|PLA2G2D|26279|phospholipase A2, group IID##AM393597|PLA2G2D|26279|phospholipase A2, group IID##AM393824|PLA2G2D|26279|phospholipase A2, group IID##BC025706|PLA2G2D|26279|phospholipase A2, group IID##NM_012400|PLA2G2D|26279|phospholipase A2, group IID##AF112982|PLA2G2D|26279|phospholipase A2, group IID##AY358606|PLA2G2D|26279|phospholipase A2, group IID##AK290406|PLA2G2D|26279|phospholipase A2, group IID##AF188625|PLA2G2D|26279|phospholipase A2, group IID##AK310156|PLA2G2D|26279|phospholipase A2, group IID##AK311903|PLA2G2D|26279|phospholipase A2, group IID##AK301396|PLA2G2D|26279|phospholipase A2, group IID##NM_001105572|PLA2G2C|391013|phospholipase A2, group IIC##BC047428|UBXN10|127733|UBX domain protein 10##NM_152376|UBXN10|127733|UBX domain protein 10##BX648631|UBXN10|127733|UBX domain protein 10##AK058158|UBXN10|127733|UBX domain protein 10##NM_001039500|VWA5B1|127731|von Willebrand factor A domain containing 5B1##AK125833|VWA5B1|127731|von Willebrand factor A domain containing 5B1	0.994025	0.0	
chr3	135913423	135913570	reg1002778.p1	8.663	+	AK302491 NM_001145417	-204	-	NM_181897 AK316258 L12146	-171878	+	BC029409 TSC_hg19_v1_chr3_+_135684606 L07590	-228876	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	1185	-	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	55668	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	55706	+	AK302491|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_001145417|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC029409|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L07590|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide	0.999404	0.0	denovo_WM_7:15:0.741
chr7	143315886	143316066	reg1003015.p2	8.660	+	BC043153 BC110410 NM_001008747 BC146818 BC150314	-47085	+	BC101157 BC101158 NM_176883	-141011	+	AB529260 BC100938 BC100939 BC100940 BC100941 NM_177437	-175431	+	BC041464 AK315909 NM_001130025 AK098041 AK297123 AL832734 BC033189	2086	+	BC113530 BC117233 NM_173678 AY167570 BC010225	2566	+	NM_001130026 AK296318	96974	+	BC043153|CTAGE6P|340307|CTAGE family, member 6, pseudogene##BC110410|CTAGE6P|340307|CTAGE family, member 6, pseudogene##NM_001008747|CTAGE15P|441294|CTAGE family, member 15, pseudogene##BC146818|CTAGE15P|441294|CTAGE family, member 15, pseudogene##BC150314|CTAGE15P|441294|CTAGE family, member 15, pseudogene##BC101157|TAS2R41|259287|taste receptor, type 2, member 41##BC101158|TAS2R41|259287|taste receptor, type 2, member 41##NM_176883|TAS2R41|259287|taste receptor, type 2, member 41##BC100938|TAS2R60|338398|taste receptor, type 2, member 60##BC100939|TAS2R60|338398|taste receptor, type 2, member 60##BC100940|TAS2R60|338398|taste receptor, type 2, member 60##BC100941|TAS2R60|338398|taste receptor, type 2, member 60##NM_177437|TAS2R60|338398|taste receptor, type 2, member 60##BC041464|LOC154761|154761|uncharacterized LOC154761##NM_001130025|FAM115C|285966|family with sequence similarity 115, member C##AK098041|FAM115C|285966|family with sequence similarity 115, member C##AK297123|LOC154761|154761|uncharacterized LOC154761##AL832734|FAM115C|285966|family with sequence similarity 115, member C##BC033189|LOC154761|154761|uncharacterized LOC154761##BC113530|FAM115C|285966|family with sequence similarity 115, member C##BC117233|FAM115C|285966|family with sequence similarity 115, member C##NM_173678|FAM115C|285966|family with sequence similarity 115, member C##AY167570|FAM115C|285966|family with sequence similarity 115, member C##BC010225|LOC154761|154761|uncharacterized LOC154761##NM_001130026|FAM115C|285966|family with sequence similarity 115, member C##AK296318|FAM115C|285966|family with sequence similarity 115, member C	1.919473	0.0	denovo_WM_7:-25:0.368	denovo_WM_7:-28:0.305
chr19	40217907	40218056	reg1002652.p1	8.659	+	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-22938	+	FJ613352 NM_001190441	-71436	+	BC066304 AY055826 BC069312 NM_013268 FJ613336 FJ613337 FJ613338 AF117383 CU686743	-124796	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	10658	-	NM_001143832	49252	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	106817	-	AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613352|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001190441|LGALS16|148003|lectin, galactoside-binding, soluble, 16##BC066304|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AY055826|LGALS13|29124|lectin, galactoside-binding, soluble, 13##BC069312|LGALS13|29124|lectin, galactoside-binding, soluble, 13##NM_013268|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613336|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613337|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613338|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AF117383|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##NM_001143832|LEUTX|342900|leucine twenty homeobox##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B	0.980908	0.0	denovo_WM_7:61:0.969
chr21	43870208	43870356	reg1002890.p2	8.658	+	NM_001001895 NM_001243467 NM_018961 AK313367 AK301279 BC028138 AJ277750 BC069357 BC069483 BC069577 BC069511 TSC_hg19_v1_chr21_+_43824026 AK308151 AF520809 AF521702 CU686870	-46270	+	AY358458 AF201380 AF267741 AK172842 AB038157 AB038160 NM_024022 NM_032405	-54121	-	M12075 BC032811 NM_003225 X00474 X52003	-83660	-	HQ258144 AK314746 BC101519 BC113367 AK057315 AB041016 NM_080860 AB006536	46098	-	AJ269529 NM_018964	49459	+	TSC_hg19_v1_chr21_+_43933984 BC042139 AF311320	63721	+	NM_001001895|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_001243467|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_018961|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK313367|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK301279|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC028138|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AJ277750|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069357|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069483|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069577|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069511|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK308151|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF520809|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF521702|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AY358458|TMPRSS3|64699|transmembrane protease, serine 3##AF201380|TMPRSS3|64699|transmembrane protease, serine 3##AF267741|TMPRSS3|64699|transmembrane protease, serine 3##AK172842|TMPRSS3|64699|transmembrane protease, serine 3##AB038157|TMPRSS3|64699|transmembrane protease, serine 3##AB038160|TMPRSS3|64699|transmembrane protease, serine 3##NM_024022|TMPRSS3|64699|transmembrane protease, serine 3##NM_032405|TMPRSS3|64699|transmembrane protease, serine 3##M12075|TFF1|7031|trefoil factor 1##BC032811|TFF1|7031|trefoil factor 1##NM_003225|TFF1|7031|trefoil factor 1##X00474|TFF1|7031|trefoil factor 1##X52003|TFF1|7031|trefoil factor 1##HQ258144|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK314746|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC101519|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC113367|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK057315|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB041016|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##NM_080860|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB006536|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AJ269529|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##NM_018964|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##BC042139|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##AF311320|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1	0.85986	0.04122	denovo_WM_7:47:0.619	denovo_WM_7:48:0.241
chr5	79486910	79487038	reg1002631.p1	8.658	+	BC050456 TSC_hg19_v1_chr5_+_79331170 NM_003248 AK313587 Z19585	-155810	+	TSC_hg19_v1_chr5_-_79287069 AK091375 AX746944 BX538064 BC150295 AK296864 BX647596 NM_001010891 NM_001167741	-200016	-	TSC_hg19_v1_chr5_+_78985662 BC020856 NM_153610 AL832376	-501302	+	BC101280 BC101281 BC101282 BC101283 TSC_hg19_v1_chr5_-_79551866 AF498273 AK297467 NM_001174071 NM_001174072 NM_178276	64911	-	NM_032567 AK098575 AK314007 AF333098 BC033798	128841	+	TSC_hg19_v1_chr5_+_79703879 NM_001105251 NM_014733 BC032227 BX537424 CR933621 AB002303 BC030808	216879	+	BC050456|THBS4|7060|thrombospondin 4##NM_003248|THBS4|7060|thrombospondin 4##AK313587|THBS4|7060|thrombospondin 4##Z19585|THBS4|7060|thrombospondin 4##AK091375|MTX3|345778|metaxin 3##BX538064|MTX3|345778|metaxin 3##BC150295|MTX3|345778|metaxin 3##AK296864|MTX3|345778|metaxin 3##BX647596|MTX3|345778|metaxin 3##NM_001010891|MTX3|345778|metaxin 3##NM_001167741|MTX3|345778|metaxin 3##BC020856|CMYA5|202333|cardiomyopathy associated 5##NM_153610|CMYA5|202333|cardiomyopathy associated 5##AL832376|CMYA5|202333|cardiomyopathy associated 5##BC101280|SERINC5|256987|serine incorporator 5##BC101281|SERINC5|256987|serine incorporator 5##BC101282|SERINC5|256987|serine incorporator 5##BC101283|SERINC5|256987|serine incorporator 5##AF498273|SERINC5|256987|serine incorporator 5##AK297467|SERINC5|256987|serine incorporator 5##NM_001174071|SERINC5|256987|serine incorporator 5##NM_001174072|SERINC5|256987|serine incorporator 5##NM_178276|SERINC5|256987|serine incorporator 5##NM_032567|SPZ1|84654|spermatogenic leucine zipper 1##AK098575|SPZ1|84654|spermatogenic leucine zipper 1##AK314007|SPZ1|84654|spermatogenic leucine zipper 1##AF333098|SPZ1|84654|spermatogenic leucine zipper 1##BC033798|SPZ1|84654|spermatogenic leucine zipper 1##NM_001105251|ZFYVE16|9765|zinc finger, FYVE domain containing 16##NM_014733|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC032227|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BX537424|ZFYVE16|9765|zinc finger, FYVE domain containing 16##CR933621|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AB002303|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC030808|ZFYVE16|9765|zinc finger, FYVE domain containing 16	0.702616	0.0	denovo_WM_7:-38:0.261	denovo_WM_7:-39:0.250
chr6	137051860	137051976	reg1003085.p1	8.657	+	NM_001198616 NM_001198617 NM_003980	-179962	-	TSC_hg19_v1_chr6_-_136871561 AJ242501 AJ242502 CU693064 AB384694 DQ890946 DQ896812 BC025777 AK312789 X73882	-180297	-	AK296483 AK311270 NM_001198614 NM_001198618 TSC_hg19_v1_chr6_-_136847745 AK311114 AK311236 AK316062 NM_001198619 AK311234	-204121	-	TSC_hg19_v1_chr6_-_137113169 AB384845	61312	-	TSC_hg19_v1_chr6_-_137113545 AK310942 D84476	61630	-	BC054503 TSC_hg19_v1_chr6_-_137113611	61692	-	NM_001198616|MAP7|9053|microtubule-associated protein 7##NM_001198617|MAP7|9053|microtubule-associated protein 7##NM_003980|MAP7|9053|microtubule-associated protein 7##AJ242501|MAP7|9053|microtubule-associated protein 7##AJ242502|MAP7|9053|microtubule-associated protein 7##DQ890946|MAP7|9053|microtubule-associated protein 7##DQ896812|MAP7|9053|microtubule-associated protein 7##BC025777|MAP7|9053|microtubule-associated protein 7##AK312789|MAP7|9053|microtubule-associated protein 7##X73882|MAP7|9053|microtubule-associated protein 7##AK296483|MAP7|9053|microtubule-associated protein 7##AK311270|MAP7|9053|microtubule-associated protein 7##NM_001198614|MAP7|9053|microtubule-associated protein 7##NM_001198618|MAP7|9053|microtubule-associated protein 7##AK311114|MAP7|9053|microtubule-associated protein 7##AK311236|MAP7|9053|microtubule-associated protein 7##AK316062|MAP7|9053|microtubule-associated protein 7##NM_001198619|MAP7|9053|microtubule-associated protein 7##AK311234|MAP7|9053|microtubule-associated protein 7##AK310942|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##D84476|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##BC054503|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5	0.995245	0.0	
chr8	43018299	43018479	reg1001760.p1	8.657	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-22742	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-22756	+	TSC_hg19_v1_chr8_+_42995606 NM_152419	-22809	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	129216	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	5155106	+	TSC_hg19_v1_chr8_+_48173521 AK303579	5155130	+	BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_152419|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146	0.837159	0.0	denovo_WM_7:-54:0.610
chr9	28774567	28774660	reg1002811.p1	8.656	+	AK056372 NM_152570	-55311	-	AK057806 JN681271 NM_145005	-1200772	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	-1201142	-	TSC_hg19_v1_chr9_+_32384618 NM_002197 AF261088	3609977	+	TSC_hg19_v1_chr9_+_32384622 AK057904	3610014	+	TSC_hg19_v1_chr9_+_32384648 AK308752 Z11559	3610036	+	AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2##AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##NM_002197|ACO1|48|aconitase 1, soluble##AF261088|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble##AK308752|ACO1|48|aconitase 1, soluble##Z11559|ACO1|48|aconitase 1, soluble	0.269483	0.065866	
chr12	2994601	2994718	reg1002675.p1	8.655	+	TSC_hg19_v1_chr12_-_2986314 NM_001243088 NM_001243089 NM_021953 NM_202002 NM_202003	-8202	-	TSC_hg19_v1_chr12_+_2986385 NM_001252499 NM_001252500 AB073599 AK021945 AK299990 AK304613 AK315364 BC005106	-8270	+	TSC_hg19_v1_chr12_-_2986289 U83113 U74613 U74612 AK313845 BC006192 BC006529 AK291206	-8463	-	TSC_hg19_v1_chr12_+_3000056 AK024246 NM_001160408 NM_003324 AK293285 AK307434 AF045583 BC032587 CU689434 AB464323 EU446713	5394	+	TSC_hg19_v1_chr12_+_3068645 NM_003213 NM_201441 AY101179 BC015497 AK222947 U63824 NM_201443	73935	+	TSC_hg19_v1_chr12_+_3069109 BX640921	74402	+	NM_001243088|FOXM1|2305|forkhead box M1##NM_001243089|FOXM1|2305|forkhead box M1##NM_021953|FOXM1|2305|forkhead box M1##NM_202002|FOXM1|2305|forkhead box M1##NM_202003|FOXM1|2305|forkhead box M1##NM_001252499|C12orf32|83695|chromosome 12 open reading frame 32##NM_001252500|C12orf32|83695|chromosome 12 open reading frame 32##AB073599|C12orf32|83695|chromosome 12 open reading frame 32##AK021945|C12orf32|83695|chromosome 12 open reading frame 32##AK304613|C12orf32|83695|chromosome 12 open reading frame 32##AK315364|C12orf32|83695|chromosome 12 open reading frame 32##BC005106|C12orf32|83695|chromosome 12 open reading frame 32##U83113|FOXM1|2305|forkhead box M1##U74613|FOXM1|2305|forkhead box M1##U74612|FOXM1|2305|forkhead box M1##AK313845|FOXM1|2305|forkhead box M1##BC006192|FOXM1|2305|forkhead box M1##BC006529|FOXM1|2305|forkhead box M1##AK291206|FOXM1|2305|forkhead box M1##AK024246|TULP3|7289|tubby like protein 3##NM_001160408|TULP3|7289|tubby like protein 3##NM_003324|TULP3|7289|tubby like protein 3##AK293285|TULP3|7289|tubby like protein 3##AK307434|TULP3|7289|tubby like protein 3##AF045583|TULP3|7289|tubby like protein 3##BC032587|TULP3|7289|tubby like protein 3##EU446713|TULP3|7289|tubby like protein 3##NM_003213|TEAD4|7004|TEA domain family member 4##NM_201441|TEAD4|7004|TEA domain family member 4##AY101179|TEAD4|7004|TEA domain family member 4##BC015497|TEAD4|7004|TEA domain family member 4##AK222947|TEAD4|7004|TEA domain family member 4##U63824|TEAD4|7004|TEA domain family member 4##NM_201443|TEAD4|7004|TEA domain family member 4##BX640921|TEAD4|7004|TEA domain family member 4	1.987981	0.033208	denovo_WM_7:75:0.651	denovo_WM_7:76:0.326	denovo_WM_7:90:0.332	denovo_WM_7:91:0.657
chrX	44781125	44781289	reg1002946.p1	8.654	+	TSC_hg19_v1_chrX_+_44732433 NM_021140 AB208795	-48771	+	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	-77894	+	TSC_hg19_v1_chrX_-_44402101 BC035015 BC042813 NM_173794	-379053	-	BC035375 AY358764 TSC_hg19_v1_chrX_-_45060106 BC137528 BC137529 AK024165 NM_024689 NM_176819	278906	-	NM_001129898 NM_001129899 NM_001129900 NM_017776 TSC_hg19_v1_chrX_+_46306706 AK289703 AK096413 AK000351	1525504	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	1623649	-	NM_021140|KDM6A|7403|lysine (K)-specific demethylase 6A##AB208795|KDM6A|7403|lysine (K)-specific demethylase 6A##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21##BC035015|FUNDC1|139341|FUN14 domain containing 1##BC042813|FUNDC1|139341|FUN14 domain containing 1##NM_173794|FUNDC1|139341|FUN14 domain containing 1##BC035375|CXorf36|79742|chromosome X open reading frame 36##AY358764|CXorf36|79742|chromosome X open reading frame 36##BC137528|CXorf36|79742|chromosome X open reading frame 36##BC137529|CXorf36|79742|chromosome X open reading frame 36##AK024165|CXorf36|79742|chromosome X open reading frame 36##NM_024689|CXorf36|79742|chromosome X open reading frame 36##NM_176819|CXorf36|79742|chromosome X open reading frame 36##NM_001129898|ZNF673|55634|zinc finger family member 673##NM_001129899|ZNF673|55634|zinc finger family member 673##NM_001129900|ZNF673|55634|zinc finger family member 673##NM_017776|ZNF673|55634|zinc finger family member 673##AK289703|ZNF673|55634|zinc finger family member 673##AK096413|ZNF673|55634|zinc finger family member 673##AK000351|ZNF673|55634|zinc finger family member 673##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674	1.986077	0.0	denovo_WM_7:74:0.232	denovo_WM_7:94:0.200	denovo_WM_7:95:0.233
chr19	5276966	5277085	reg1002639.p1	8.653	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-244126	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-307852	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-307901	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	63769	-	AK098722 NM_181710 AK292251 BC017592	178401	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	345733	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	0.993378	0.0	denovo_WM_7:50:0.238	denovo_WM_7:51:0.238	denovo_WM_7:52:0.238	denovo_WM_7:53:0.238
chr2	43002445	43002608	reg1003109.p1	8.653	+	AY158687 AB528920 AB083055 BC063549 NM_148962	-11226	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-206629	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-206805	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	17225	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	450819	-	TSC_hg19_v1_chr2_-_43453736 BC020369	451204	-	AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.0	0.0	
chr3	105041931	105042073	reg1003424.p1	8.652	+	AY090780 NM_175056 BC143817	-2888135	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-3473628	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-3495042	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	43578	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	43820	+	CR749655 TSC_hg19_v1_chr3_-_105421064	379052	-	AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b	0.086634	0.0	
chr6	152623554	152623687	reg1002658.p2	8.652	+	TSC_hg19_v1_chr6_-_152623240 AK310977	-369	-	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	-494754	+	NM_001122740 U68067	-495167	+	TSC_hg19_v1_chr6_-_152702331 BX537517	78721	-	AK056122 TSC_hg19_v1_chr6_-_152702456 BC039121	78854	-	AF535142 NM_033071 TSC_hg19_v1_chr6_-_152958011	334422	-	AK310977|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##BX537517|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AK056122|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##BC039121|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AF535142|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##NM_033071|SYNE1|23345|spectrin repeat containing, nuclear envelope 1	0.0	0.0	
chr10	21582331	21582424	reg1001209.p1	8.649	+	TSC_hg19_v1_chr10_-_21463021 BC126132 BC126134 BC144201 AJ580772 NM_001173484 NM_213569	-119310	-	AB209311 TSC_hg19_v1_chr10_-_21462987	-119390	-	BC140744 BC144447 NM_001010896 NM_001177483	-146890	-	BC130594 BC132974 TSC_hg19_v1_chr10_-_21785960	203555	-	TSC_hg19_v1_chr10_-_21786190 BC040880	203814	-	TSC_hg19_v1_chr10_-_21786207 NM_001010911	203848	-	BC126132|NEBL|10529|nebulette##BC126134|NEBL|10529|nebulette##BC144201|NEBL|10529|nebulette##AJ580772|NEBL|10529|nebulette##NM_001173484|NEBL|10529|nebulette##NM_213569|NEBL|10529|nebulette##AB209311|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113##BC130594|C10orf114|399726|chromosome 10 open reading frame 114##BC132974|C10orf114|399726|chromosome 10 open reading frame 114##BC040880|C10orf114|399726|chromosome 10 open reading frame 114##NM_001010911|C10orf114|399726|chromosome 10 open reading frame 114	2.418097	0.0	denovo_WM_7:54:0.421
chr1	159897648	159897754	reg1002180.p1	8.649	+	TSC_hg19_v1_chr1_-_159895294 BC002616 D21261 GU727636 NM_003564 AK291562 AK298654	-2414	-	BC009357 TSC_hg19_v1_chr1_-_159895269	-2436	-	BC089391 BC027874 NM_012337 BC064386 AF094758 AK308262 AK225566 AK225582 AK292249	-27776	-	TSC_hg19_v1_chr1_-_159915401 AB037776 BC030141 NM_001135050 NM_020789 AY358128	17693	-	BC074754 BC070213 AY358801 AF275725 AY034613 NM_001146172 NM_001146173 NM_033438	26301	-	CU676470 TSC_hg19_v1_chr1_-_160001654 BC001803	103895	-	BC002616|TAGLN2|8407|transgelin 2##D21261|TAGLN2|8407|transgelin 2##GU727636|TAGLN2|8407|transgelin 2##NM_003564|TAGLN2|8407|transgelin 2##AK291562|TAGLN2|8407|transgelin 2##AK298654|TAGLN2|8407|transgelin 2##BC009357|TAGLN2|8407|transgelin 2##BC089391|CCDC19|25790|coiled-coil domain containing 19##BC027874|CCDC19|25790|coiled-coil domain containing 19##NM_012337|CCDC19|25790|coiled-coil domain containing 19##BC064386|CCDC19|25790|coiled-coil domain containing 19##AF094758|CCDC19|25790|coiled-coil domain containing 19##AK308262|CCDC19|25790|coiled-coil domain containing 19##AK225566|CCDC19|25790|coiled-coil domain containing 19##AK225582|CCDC19|25790|coiled-coil domain containing 19##AK292249|CCDC19|25790|coiled-coil domain containing 19##AB037776|IGSF9|57549|immunoglobulin superfamily, member 9##BC030141|IGSF9|57549|immunoglobulin superfamily, member 9##NM_001135050|IGSF9|57549|immunoglobulin superfamily, member 9##NM_020789|IGSF9|57549|immunoglobulin superfamily, member 9##AY358128|IGSF9|57549|immunoglobulin superfamily, member 9##BC074754|SLAMF9|89886|SLAM family member 9##BC070213|SLAMF9|89886|SLAM family member 9##AY358801|SLAMF9|89886|SLAM family member 9##AF275725|SLAMF9|89886|SLAM family member 9##AY034613|SLAMF9|89886|SLAM family member 9##NM_001146172|SLAMF9|89886|SLAM family member 9##NM_001146173|SLAMF9|89886|SLAM family member 9##NM_033438|SLAMF9|89886|SLAM family member 9##BC001803|PIGM|93183|phosphatidylinositol glycan anchor biosynthesis, class M	0.998943	0.0	denovo_WM_7:-11:0.720
chr5	149857118	149857298	reg1002835.p1	8.648	+	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	-27917	-	TSC_hg19_v1_chr5_-_149829249 BC020515	-27964	-	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	-64758	-	TSC_hg19_v1_chr5_+_149865341 AB209107	8231	+	AK292448 NM_001543 U36600	30505	+	TSC_hg19_v1_chr5_+_149980641 AL831818 NM_001166208	123434	+	BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##BC020515|RPS14|6208|ribosomal protein S14##NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AK292448|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##NM_001543|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##U36600|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AL831818|SYNPO|11346|synaptopodin##NM_001166208|SYNPO|11346|synaptopodin	0.866832	0.0	denovo_WM_7:35:0.574
chr15	80236344	80236481	reg1003060.p1	8.645	+	TSC_hg19_v1_chr15_-_80216042 AF249277	-20374	-	NM_001100880 NM_001199757	-20749	-	NM_001199760	-20965	-	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	27139	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	115530	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	115617	+	AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001199760|ST20-MTHFS|100528021|ST20-MTHFS readthrough##BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6	0.989859	0.0	denovo_WM_7:8:0.930
chr5	114939489	114939621	reg1003899.p1	8.643	+	BC109265 BC109266 NM_021649	-1438	-	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	-58992	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	-59198	-	TSC_hg19_v1_chr5_-_114961697 AK074962	22137	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	22239	-	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	212808	-	BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I	0.99751	0.0	
chr2	24809126	24809270	reg1000877.p1	8.640	+	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	-1821	+	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	-225718	-	BC050462 NM_001040710	-411227	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	207040	-	NM_001199803 AK027859 TSC_hg19_v1_chr2_+_25016332 NM_024322 BC002870 AK315483	207073	+	HQ258684 AK027857 BC126235 BC144119 AF033861 NM_004036 AK122926	332759	-	NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001199803|CENPO|79172|centromere protein O##AK027859|CENPO|79172|centromere protein O##NM_024322|CENPO|79172|centromere protein O##BC002870|CENPO|79172|centromere protein O##AK315483|CENPO|79172|centromere protein O##HQ258684|ADCY3|109|adenylate cyclase 3##AK027857|ADCY3|109|adenylate cyclase 3##BC126235|ADCY3|109|adenylate cyclase 3##BC144119|ADCY3|109|adenylate cyclase 3##AF033861|ADCY3|109|adenylate cyclase 3##NM_004036|ADCY3|109|adenylate cyclase 3##AK122926|ADCY3|109|adenylate cyclase 3	1.093524	0.0	
chr3	15358097	15358278	reg1003382.p1	8.640	+	TSC_hg19_v1_chr3_+_15247768 AB028639 BC056202 AK314253 CU691130	-110233	+	TSC_hg19_v1_chr3_+_15247736 NM_014296	-110453	+	TSC_hg19_v1_chr3_-_15140655 AK291288 AK301735 AL833545 NM_022340	-217534	-	BC023195 DQ892875 EU176725 AB005047 AB590534 TSC_hg19_v1_chr3_-_15374053 BC010123	15754	-	TSC_hg19_v1_chr3_-_15374094 AL117422 AK313167 NM_004844	15910	-	BC006169 NM_001018009	24700	-	AB028639|CAPN7|23473|calpain 7##BC056202|CAPN7|23473|calpain 7##AK314253|CAPN7|23473|calpain 7##NM_014296|CAPN7|23473|calpain 7##AK291288|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AK301735|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AL833545|ZFYVE20|64145|zinc finger, FYVE domain containing 20##NM_022340|ZFYVE20|64145|zinc finger, FYVE domain containing 20##BC023195|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##DQ892875|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##EU176725|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AB005047|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC010123|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AL117422|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AK313167|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##NM_004844|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC006169|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##NM_001018009|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)	0.969811	0.0	denovo_WM_7:55:0.428	denovo_WM_7:56:0.481
chr10	15014007	15014103	reg1002892.p2	8.639	+	NM_001080836	-12618	+	CU692508 TSC_hg19_v1_chr10_-_14996096 BC108276 AK022922 BC022254 AF395747 AF395748 AF395749 AF395750 AF395751 AF395752 AJ296101 BC009185 BX648858 AK021422 AK290598 AK307912 NM_001033855 NM_001033857 NM_001033858 NM_022487	-18001	-	NM_001193424 NM_001193426 BC029360 TSC_hg19_v1_chr10_+_14920864 NM_001193425 NM_001193427 AK222565 AK225369 AK027067 CU688630 BC007754 NM_024670	-93216	+	NM_001039702 NM_018324 BC050372 AK001844 AK001968	71872	+	BC029526 AK095538 AK295169 NM_001039844 TSC_hg19_v1_chr10_-_15130776	116719	-	NM_001097590 NM_006414 NM_183005 TSC_hg19_v1_chr10_+_15139195 AK223418	125137	+	NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##BC108276|DCLRE1C|64421|DNA cross-link repair 1C##AK022922|DCLRE1C|64421|DNA cross-link repair 1C##BC022254|DCLRE1C|64421|DNA cross-link repair 1C##AF395747|DCLRE1C|64421|DNA cross-link repair 1C##AF395748|DCLRE1C|64421|DNA cross-link repair 1C##AF395749|DCLRE1C|64421|DNA cross-link repair 1C##AF395750|DCLRE1C|64421|DNA cross-link repair 1C##AF395751|DCLRE1C|64421|DNA cross-link repair 1C##AF395752|DCLRE1C|64421|DNA cross-link repair 1C##AJ296101|DCLRE1C|64421|DNA cross-link repair 1C##BC009185|DCLRE1C|64421|DNA cross-link repair 1C##BX648858|DCLRE1C|64421|DNA cross-link repair 1C##AK021422|DCLRE1C|64421|DNA cross-link repair 1C##AK290598|DCLRE1C|64421|DNA cross-link repair 1C##AK307912|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033855|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033857|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033858|DCLRE1C|64421|DNA cross-link repair 1C##NM_022487|DCLRE1C|64421|DNA cross-link repair 1C##NM_001193424|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193426|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC029360|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193425|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193427|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK222565|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK225369|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK027067|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC007754|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_024670|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase##BC029526|ACBD7|414149|acyl-CoA binding domain containing 7##AK095538|ACBD7|414149|acyl-CoA binding domain containing 7##AK295169|ACBD7|414149|acyl-CoA binding domain containing 7##NM_001039844|ACBD7|414149|acyl-CoA binding domain containing 7##NM_001097590|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_006414|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_183005|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK223418|RPP38|10557|ribonuclease P/MRP 38kDa subunit	1.092584	0.507338	CTCF.p2:26:0.507	denovo_WM_7:-31:0.243	denovo_WM_7:-32:0.627
chr15	84812631	84812795	reg1003268.p1	8.636	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-489886	+	TSC_hg19_v1_chr15_+_84116176 BC035598 AF036269 AF036270 AF036271 AF036272 CU692124 X99664	-696485	+	AK309086 NM_003027 TSC_hg19_v1_chr15_+_84116127 AK307442 BC042864	-696653	+	NM_001243531	28528	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	331568	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	384759	-	AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##BC035598|SH3GL3|6457|SH3-domain GRB2-like 3##AF036269|SH3GL3|6457|SH3-domain GRB2-like 3##AF036270|SH3GL3|6457|SH3-domain GRB2-like 3##AF036271|SH3GL3|6457|SH3-domain GRB2-like 3##AF036272|SH3GL3|6457|SH3-domain GRB2-like 3##X99664|SH3GL3|6457|SH3-domain GRB2-like 3##AK309086|SH3GL3|6457|SH3-domain GRB2-like 3##NM_003027|SH3GL3|6457|SH3-domain GRB2-like 3##AK307442|SH3GL3|6457|SH3-domain GRB2-like 3##BC042864|SH3GL3|6457|SH3-domain GRB2-like 3##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73	0.99935	0.0	denovo_WM_7:11:0.974
chr12	123917584	123917709	reg1003559.p2	8.635	+	AY064546 TSC_hg19_v1_chr12_+_123873657	-44017	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	-48923	+	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	-48991	+	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	3366	-	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	3595	-	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	25057	+	AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)	0.999132	0.0	denovo_WM_7:13:0.239	denovo_WM_7:14:0.239	denovo_WM_7:15:0.239	denovo_WM_7:16:0.239
chr1	234977728	234977894	reg1002968.p2	8.635	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-82037	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-232565	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-233953	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	314278	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	314420	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	346752	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.901567	0.0	denovo_WM_7:-2:0.396	denovo_WM_7:-3:0.449
chr11	124663678	124663804	reg1002605.p2	8.634	+	CU677755 DQ891768 DQ894952 BC016868 TSC_hg19_v1_chr11_-_124632187 AF361746 AY358382 AK075396 AK301160 AK314710 NM_138961	-31605	-	AY358897 TSC_hg19_v1_chr11_-_124622152 BC012567	-41590	-	TSC_hg19_v1_chr11_-_124622090 AK000460 BC007313 NM_014312	-41645	-	TSC_hg19_v1_chr11_-_124670282 AK303902	6528	-	TSC_hg19_v1_chr11_-_124670286 BC064919 AK026995 NM_024631	6578	-	AY509035 TSC_hg19_v1_chr11_+_124735327 AK056544 NM_022370 AK291045	71584	+	DQ891768|ESAM|90952|endothelial cell adhesion molecule##DQ894952|ESAM|90952|endothelial cell adhesion molecule##BC016868|ESAM|90952|endothelial cell adhesion molecule##AF361746|ESAM|90952|endothelial cell adhesion molecule##AY358382|ESAM|90952|endothelial cell adhesion molecule##AK075396|ESAM|90952|endothelial cell adhesion molecule##AK301160|ESAM|90952|endothelial cell adhesion molecule##AK314710|ESAM|90952|endothelial cell adhesion molecule##NM_138961|ESAM|90952|endothelial cell adhesion molecule##AY358897|VSIG2|23584|V-set and immunoglobulin domain containing 2##BC012567|VSIG2|23584|V-set and immunoglobulin domain containing 2##AK000460|VSIG2|23584|V-set and immunoglobulin domain containing 2##BC007313|VSIG2|23584|V-set and immunoglobulin domain containing 2##NM_014312|VSIG2|23584|V-set and immunoglobulin domain containing 2##AK303902|C11orf61|79684|chromosome 11 open reading frame 61##BC064919|C11orf61|79684|chromosome 11 open reading frame 61##AK026995|C11orf61|79684|chromosome 11 open reading frame 61##NM_024631|C11orf61|79684|chromosome 11 open reading frame 61##AY509035|ROBO3|64221|roundabout, axon guidance receptor, homolog 3 (Drosophila)##NM_022370|ROBO3|64221|roundabout, axon guidance receptor, homolog 3 (Drosophila)##AK291045|ROBO3|64221|roundabout, axon guidance receptor, homolog 3 (Drosophila)	0.94428	0.321595	denovo_WM_7:-39:0.438
chr2	178499043	178499191	reg1002974.p2	8.634	+	AK292395 BC042848 NM_152275	-15432	-	TSC_hg19_v1_chr2_-_178483463 CU692122 AK057530 AK125104 BC048006	-15689	-	TSC_hg19_v1_chr2_-_178417525 AK296828 AK055552 BC033795 NM_152517	-81632	-	AJ251509 NM_001077196	254347	-	AF281865 NM_001077358	288425	-	BC112393 BC114431 AB036704 NM_016953 TSC_hg19_v1_chr2_-_178937505 AK309155	438391	-	AK292395|TTC30A|92104|tetratricopeptide repeat domain 30A##BC042848|TTC30A|92104|tetratricopeptide repeat domain 30A##NM_152275|TTC30A|92104|tetratricopeptide repeat domain 30A##AK057530|TTC30A|92104|tetratricopeptide repeat domain 30A##AK125104|TTC30A|92104|tetratricopeptide repeat domain 30A##BC048006|TTC30A|92104|tetratricopeptide repeat domain 30A##AK296828|TTC30B|150737|tetratricopeptide repeat domain 30B##AK055552|TTC30B|150737|tetratricopeptide repeat domain 30B##BC033795|TTC30B|150737|tetratricopeptide repeat domain 30B##NM_152517|TTC30B|150737|tetratricopeptide repeat domain 30B##AJ251509|PDE11A|50940|phosphodiesterase 11A##NM_001077196|PDE11A|50940|phosphodiesterase 11A##AF281865|PDE11A|50940|phosphodiesterase 11A##NM_001077358|PDE11A|50940|phosphodiesterase 11A##BC112393|PDE11A|50940|phosphodiesterase 11A##BC114431|PDE11A|50940|phosphodiesterase 11A##AB036704|PDE11A|50940|phosphodiesterase 11A##NM_016953|PDE11A|50940|phosphodiesterase 11A	0.988588	0.0	denovo_WM_7:8:0.819
chr22	39258452	39258621	reg1003018.p1	8.631	+	NM_014293 TSC_hg19_v1_chr22_-_39240034	-18493	-	TSC_hg19_v1_chr22_-_39239733 AB527378	-18755	-	TSC_hg19_v1_chr22_-_39190149 AK223349 AK289744 AL035366 NM_005740	-68361	-	TSC_hg19_v1_chr22_-_39268213 CU680218 CU687960 DQ893667 DQ895787 BC064900	9655	-	TSC_hg19_v1_chr22_-_39268222 BC012111 AK293035	9685	-	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	9768	-	NM_014293|NPTXR|23467|neuronal pentraxin receptor##AK223349|DNAL4|10126|dynein, axonemal, light chain 4##AL035366|DNAL4|10126|dynein, axonemal, light chain 4##NM_005740|DNAL4|10126|dynein, axonemal, light chain 4##DQ893667|CBX6|23466|chromobox homolog 6##DQ895787|CBX6|23466|chromobox homolog 6##BC064900|CBX6|23466|chromobox homolog 6##BC012111|CBX6|23466|chromobox homolog 6##AK293035|CBX6|23466|chromobox homolog 6##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6	3.827692	0.0	denovo_WM_7:-2:0.273	denovo_WM_7:-3:0.330	denovo_WM_7:-4:0.387	denovo_WM_7:12:0.814	denovo_WM_7:27:0.351	denovo_WM_7:28:0.474	denovo_WM_7:45:0.308	denovo_WM_7:46:0.482
chr20	6817831	6817970	reg1001754.p1	8.629	+	BC069214 NM_001200	-69156	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-713737	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-714023	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1103202	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1182400	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1182507	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.0	0.0	
chr17_ctg5_hap1	4802	4947	reg1003630.p1	8.628	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.034403	0.0	
chr2	72972996	72973132	reg1003370.p1	8.628	+	TSC_hg19_v1_chr2_-_72374955 AF252297 AK294814 BC069443 BC109205 FJ467289 NM_019885 CU686818 AK313433	-598122	-	AK295683 TSC_hg19_v1_chr2_-_72371202	-601865	-	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	-1279171	+	TSC_hg19_v1_chr2_-_73053163 AB384543 AB023136 NM_015189	80040	-	TSC_hg19_v1_chr2_+_73114529 NM_003124 AK222942 M76231 BC017310 AK291856 DQ891699 DQ894880	141466	+	BC045762 NM_004097 TSC_hg19_v1_chr2_+_73144689	171589	+	AF252297|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK294814|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC069443|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC109205|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##FJ467289|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_019885|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK313433|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AB023136|EXOC6B|23233|exocyst complex component 6B##NM_015189|EXOC6B|23233|exocyst complex component 6B##NM_003124|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK222942|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##M76231|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC017310|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK291856|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ891699|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ894880|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC045762|EMX1|2016|empty spiracles homeobox 1##NM_004097|EMX1|2016|empty spiracles homeobox 1	0.605855	0.827844	CTCF.p2:32:0.828	denovo_WM_7:-105:0.558
chr9	19184231	19184392	reg1003443.p1	8.628	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-56763	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-56834	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-81302	-	NM_017925 BC144484 BC144485	106440	+	TSC_hg19_v1_chr9_-_19378815 BC035447	194555	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	195916	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	0.040857	0.0	
chr22	36728658	36728810	reg1002544.p1	8.626	+	D11393 TSC_hg19_v1_chr22_-_36697021	-31720	-	BC011915 TSC_hg19_v1_chr22_-_36681760	-46971	-	TSC_hg19_v1_chr22_+_36649178 AF305224 AK303919 AK313752 AK298053 BC113867 BC114475 BC127186 BC143038 BC143039 BC017331 AK296099	-79545	+	TSC_hg19_v1_chr22_-_36783906 AB290175 CR456526	55152	-	TSC_hg19_v1_chr22_-_36783943 M81105	55218	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	55245	-	D11393|MYH9|4627|myosin, heavy chain 9, non-muscle##BC011915|MYH9|4627|myosin, heavy chain 9, non-muscle##AF305224|APOL1|8542|apolipoprotein L, 1##AK303919|APOL1|8542|apolipoprotein L, 1##AK313752|APOL1|8542|apolipoprotein L, 1##AK298053|APOL1|8542|apolipoprotein L, 1##BC113867|APOL1|8542|apolipoprotein L, 1##BC114475|APOL1|8542|apolipoprotein L, 1##BC127186|APOL1|8542|apolipoprotein L, 1##BC143038|APOL1|8542|apolipoprotein L, 1##BC143039|APOL1|8542|apolipoprotein L, 1##BC017331|APOL1|8542|apolipoprotein L, 1##AK296099|APOL1|8542|apolipoprotein L, 1##AB290175|MYH9|4627|myosin, heavy chain 9, non-muscle##CR456526|MYH9|4627|myosin, heavy chain 9, non-muscle##M81105|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle	1.988263	0.0	denovo_WM_7:-5:0.916	denovo_WM_7:-20:0.925
chr15	63034732	63034877	reg1003105.p2	8.624	+	AF402000 NM_015059	-95295	+	TSC_hg19_v1_chr15_+_62682748 AB621808	-352086	+	NM_001007595	-577323	-	TSC_hg19_v1_chr15_+_63050761 BX648144 BX648146	15970	+	TSC_hg19_v1_chr15_+_63334949 NM_000366 NM_001018004 NM_001018005 NM_001018006 NM_001018007 NM_001018020 AK092051 AX747334 BC007433 AK057989 AK299387 AK129882 AK131384 AK309170 AL050179 M19713 DQ893259 DQ896588 CU675655 AY640414 AY640415	300098	+	M19714 TSC_hg19_v1_chr15_+_63335095	300286	+	AF402000|TLN2|83660|talin 2##NM_015059|TLN2|83660|talin 2##AB621808|TLN2|83660|talin 2##NM_001007595|C2CD4B|388125|C2 calcium-dependent domain containing 4B##BX648144|TLN2|83660|talin 2##BX648146|TLN2|83660|talin 2##NM_000366|TPM1|7168|tropomyosin 1 (alpha)##NM_001018004|TPM1|7168|tropomyosin 1 (alpha)##NM_001018005|TPM1|7168|tropomyosin 1 (alpha)##NM_001018006|TPM1|7168|tropomyosin 1 (alpha)##NM_001018007|TPM1|7168|tropomyosin 1 (alpha)##NM_001018020|TPM1|7168|tropomyosin 1 (alpha)##AK092051|TPM1|7168|tropomyosin 1 (alpha)##BC007433|TPM1|7168|tropomyosin 1 (alpha)##AK057989|TPM1|7168|tropomyosin 1 (alpha)##AK299387|TPM1|7168|tropomyosin 1 (alpha)##AK129882|TPM1|7168|tropomyosin 1 (alpha)##AK131384|TPM1|7168|tropomyosin 1 (alpha)##AK309170|TPM1|7168|tropomyosin 1 (alpha)##AL050179|TPM1|7168|tropomyosin 1 (alpha)##M19713|TPM1|7168|tropomyosin 1 (alpha)##DQ893259|TPM1|7168|tropomyosin 1 (alpha)##DQ896588|TPM1|7168|tropomyosin 1 (alpha)##AY640414|TPM1|7168|tropomyosin 1 (alpha)##AY640415|TPM1|7168|tropomyosin 1 (alpha)##M19714|TPM1|7168|tropomyosin 1 (alpha)	0.0	0.016498	
chr21	34577454	34577631	reg1002219.p4	8.624	+	TSC_hg19_v1_chr21_+_34444006 BC011252	-133497	+	TSC_hg19_v1_chr21_+_34442554 AB463154 DQ896828 BC026989	-134981	+	TSC_hg19_v1_chr21_+_34442446 BC033290 NM_138983 AL834450 AB209791	-135090	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	24678	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	24737	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	24860	+	BC011252|OLIG1|116448|oligodendrocyte transcription factor 1##DQ896828|OLIG1|116448|oligodendrocyte transcription factor 1##BC026989|OLIG1|116448|oligodendrocyte transcription factor 1##BC033290|OLIG1|116448|oligodendrocyte transcription factor 1##NM_138983|OLIG1|116448|oligodendrocyte transcription factor 1##AL834450|OLIG1|116448|oligodendrocyte transcription factor 1##AB209791|OLIG1|116448|oligodendrocyte transcription factor 1##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2	1.837906	0.0	denovo_WM_7:11:0.799
chr11	59324994	59325123	reg1002564.p1	8.623	+	NM_001004711	-42673	+	NM_001004706	-54010	+	BC136893 BC136894 NM_001004705	-80185	+	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	58111	-	TSC_hg19_v1_chr11_-_59383232 BC011581	58152	-	AF185696 M86917 NM_002556	58558	-	NM_001004711|OR4D9|390199|olfactory receptor, family 4, subfamily D, member 9##NM_001004706|OR4D11|219986|olfactory receptor, family 4, subfamily D, member 11##BC136893|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC136894|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##NM_001004705|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##BC011581|OSBP|5007|oxysterol binding protein##AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein	0.999094	0.0	denovo_WM_7:28:0.874
chr6	6724927	6725034	reg1003008.p1	8.622	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-136030	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-404070	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	-404095	-	BC039678 TSC_hg19_v1_chr6_+_6725205	181	+	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	382846	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	383055	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1	0.98649	0.50805	denovo_WM_7:13:0.795	CTCF.p2:-35:0.508
chr2	12003910	12004084	reg1002491.p1	8.620	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-117222	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-193706	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-321154	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	853256	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	853919	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	854400	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.0	0.911962	CTCF.p2:-62:0.912
chr17	35806148	35806290	reg1002656.p1	8.619	+	AK022767 NM_001488 NM_133439	-38908	+	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	-39257	+	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	-39344	-	NM_007026 TSC_hg19_v1_chr17_+_35849956	43741	+	TSC_hg19_v1_chr17_+_35849996 AK314894	43770	+	TSC_hg19_v1_chr17_+_35849998 BC001894 AF038844 BC000370 BC004448	43796	+	AK022767|TADA2A|6871|transcriptional adaptor 2A##NM_001488|TADA2A|6871|transcriptional adaptor 2A##NM_133439|TADA2A|6871|transcriptional adaptor 2A##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_007026|DUSP14|11072|dual specificity phosphatase 14##AK314894|DUSP14|11072|dual specificity phosphatase 14##BC001894|DUSP14|11072|dual specificity phosphatase 14##AF038844|DUSP14|11072|dual specificity phosphatase 14##BC000370|DUSP14|11072|dual specificity phosphatase 14##BC004448|DUSP14|11072|dual specificity phosphatase 14	0.9926	0.0	denovo_WM_7:-4:0.496	denovo_WM_7:-5:0.496
chr21	44530502	44530630	reg1003042.p1	8.619	+	TSC_hg19_v1_chr21_-_44527681 NM_001025203 NM_001025204 NM_006758	-2882	-	AB451244 AB528900 TSC_hg19_v1_chr21_-_44527638 BC001177 BC001923 AJ627978 AL832665 BC005915 M96982 AK307560	-2941	-	L19501 BC007257 NM_001178008 NM_001178009	-34119	-	NM_000394 U05569 BC069528 BC113598 X14789 CU686888 HQ258067 CR407691 U66584	58608	+	TSC_hg19_v1_chr21_-_44845958 AK131076 CU691580 DQ892466 DQ895679	315423	-	TSC_hg19_v1_chr21_-_44847012 AB047786 NM_173354 BC038504	316429	-	NM_001025203|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##NM_001025204|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##NM_006758|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AB451244|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001177|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001923|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AJ627978|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AL832665|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC005915|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##M96982|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AK307560|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##L19501|CBS|875|cystathionine-beta-synthase##BC007257|CBS|875|cystathionine-beta-synthase##NM_001178008|CBS|875|cystathionine-beta-synthase##NM_001178009|CBS|875|cystathionine-beta-synthase##NM_000394|CRYAA|1409|crystallin, alpha A##U05569|CRYAA|1409|crystallin, alpha A##BC069528|CRYAA|1409|crystallin, alpha A##BC113598|CRYAA|1409|crystallin, alpha A##X14789|CRYAA|1409|crystallin, alpha A##HQ258067|CRYAA|1409|crystallin, alpha A##CR407691|CRYAA|1409|crystallin, alpha A##U66584|CRYAA|1409|crystallin, alpha A##AK131076|SIK1|150094|salt-inducible kinase 1##DQ892466|SIK1|150094|salt-inducible kinase 1##DQ895679|SIK1|150094|salt-inducible kinase 1##AB047786|SIK1|150094|salt-inducible kinase 1##NM_173354|SIK1|150094|salt-inducible kinase 1##BC038504|SIK1|150094|salt-inducible kinase 1	1.903646	0.0	denovo_WM_7:63:0.854
chr8	47368581	47368650	reg1001493.p1	8.619	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-4221010	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-4372968	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-4372982	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	804880	+	TSC_hg19_v1_chr8_+_48173521 AK303579	804904	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	804917	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.988351	0.0	denovo_WM_7:-60:0.888
chr2	12571151	12571275	reg1002726.p2	8.618	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-684438	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-760922	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-888370	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	286040	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	286703	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	287184	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.999607	0.0	
chr2	30449759	30449924	reg1002503.p2	8.617	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-79965	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	-80008	+	NM_001127399 NM_001127400 NM_001127401 NM_016061 TSC_hg19_v1_chr2_+_30369786	-80071	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	4661	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	220307	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	580452	-	AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127399|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127400|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127401|YPEL5|51646|yippee-like 5 (Drosophila)##NM_016061|YPEL5|51646|yippee-like 5 (Drosophila)##AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13	0.997024	0.0	denovo_WM_7:48:0.239	denovo_WM_7:49:0.239	denovo_WM_7:50:0.239	denovo_WM_7:51:0.239
chr14	72918392	72918532	reg1003218.p2	8.616	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-518596	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-519309	+	AK294895 NM_001204423	-519646	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	442346	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	474673	+	AK098542 AF311602 NM_178441	535195	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.991334	0.0	denovo_WM_7:8:0.841
chr19	30196240	30196420	reg1003347.p2	8.616	+	TSC_hg19_v1_chr19_+_30156375 AK225814	-39909	+	NM_024310 TSC_hg19_v1_chr19_+_30156362 AK301616 AK027758 BC002744 BC018876	-39981	+	NM_006627 AK314790 TSC_hg19_v1_chr19_+_30097189 AF001176 BC013686 CR936714 Y18863 BC006098 AK303791 BC004438	-99141	+	NM_001031726 TSC_hg19_v1_chr19_-_30206184 BC004957 BC009946 BC063518 AK057185	9762	-	TSC_hg19_v1_chr19_-_30206402 NM_031448	10092	-	TSC_hg19_v1_chr19_+_30302897 AK291549 NM_001238 BC035498	106571	+	NM_024310|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##AK301616|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##AK027758|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##BC002744|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##BC018876|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##NM_006627|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AK314790|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AF001176|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC013686|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##CR936714|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##Y18863|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC006098|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AK303791|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC004438|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001031726|C19orf12|83636|chromosome 19 open reading frame 12##BC004957|C19orf12|83636|chromosome 19 open reading frame 12##BC009946|C19orf12|83636|chromosome 19 open reading frame 12##BC063518|C19orf12|83636|chromosome 19 open reading frame 12##AK057185|C19orf12|83636|chromosome 19 open reading frame 12##NM_031448|C19orf12|83636|chromosome 19 open reading frame 12##AK291549|CCNE1|898|cyclin E1##NM_001238|CCNE1|898|cyclin E1##BC035498|CCNE1|898|cyclin E1	1.996049	0.0	denovo_WM_7:95:0.920
chr5	75698634	75698782	reg1002338.p1	8.616	+	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	-319437	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-685448	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	-690446	-	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	408	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	220437	-	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	313248	+	AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor	1.901709	0.0	denovo_WM_7:-14:0.877	denovo_WM_7:-30:0.488	denovo_WM_7:-31:0.499
chrX	77320545	77320684	reg1003053.p1	8.616	+	NM_001029891 AB528771	-95478	-	AB117973 TSC_hg19_v1_chrX_+_77166237 AK096667 AB208828	-154372	+	TSC_hg19_v1_chrX_+_77166193 AK310748 NM_000052 L06133	-154421	+	NM_000291 TSC_hg19_v1_chrX_+_77359707	39073	+	TSC_hg19_v1_chrX_+_77359742 AK301632 AK303848 AK291081 AK295014 AK295182 AK298855 AK310756 AK312280 BC103752 D28371	39117	+	TSC_hg19_v1_chrX_+_77359756 V00572	39142	+	NM_001029891|PGAM4|441531|phosphoglycerate mutase family member 4##AB117973|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##AB208828|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##NM_000052|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##L06133|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##NM_000291|PGK1|5230|phosphoglycerate kinase 1##AK301632|PGK1|5230|phosphoglycerate kinase 1##AK303848|PGK1|5230|phosphoglycerate kinase 1##AK291081|PGK1|5230|phosphoglycerate kinase 1##AK295014|PGK1|5230|phosphoglycerate kinase 1##AK295182|PGK1|5230|phosphoglycerate kinase 1##AK298855|PGK1|5230|phosphoglycerate kinase 1##AK310756|PGK1|5230|phosphoglycerate kinase 1##AK312280|PGK1|5230|phosphoglycerate kinase 1##BC103752|PGK1|5230|phosphoglycerate kinase 1##D28371|PGK1|5230|phosphoglycerate kinase 1##V00572|PGK1|5230|phosphoglycerate kinase 1	0.021983	0.0	
chr1	9715094	9715230	reg1002080.p1	8.613	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-3358	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-66206	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-115526	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	168733	-	TSC_hg19_v1_chr1_-_9884023 AK304813	168859	-	TSC_hg19_v1_chr1_-_9884024 BC033902	168882	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	0.953869	0.0	denovo_WM_7:-29:0.629
chr21	47923206	47923317	reg1003242.p2	8.613	+	AK056738 TSC_hg19_v1_chr21_+_47878972 AB273729	-44265	+	TSC_hg19_v1_chr21_+_47878854 AK303351 NM_001146114 NM_001146115 NM_001146116 NM_015151 NM_206889 NM_206890 NM_206891 BC038443 BC033718 AF490768	-44399	+	TSC_hg19_v1_chr21_-_47878602 AK127572	-44660	-	BC001766 TSC_hg19_v1_chr21_-_48024996 BC041935 CS301701 CS301702 NM_006272	101748	-	TSC_hg19_v1_chr21_+_48055078 AK123650	131816	+	NM_001242864 NM_001242865 NM_001242866 NM_001535 NM_206962 TSC_hg19_v1_chr21_+_48055572 AK123352 AY786414 FJ436410 FJ436411 FJ436412 U79286 X99209 U80213 AK312573 AL833586	132282	+	AK056738|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AB273729|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AK303351|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146114|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146115|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146116|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_015151|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206889|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206890|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206891|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC038443|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC033718|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AF490768|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC001766|S100B|6285|S100 calcium binding protein B##BC041935|S100B|6285|S100 calcium binding protein B##NM_006272|S100B|6285|S100 calcium binding protein B##AK123650|PRMT2|3275|protein arginine methyltransferase 2##NM_001242864|PRMT2|3275|protein arginine methyltransferase 2##NM_001242865|PRMT2|3275|protein arginine methyltransferase 2##NM_001242866|PRMT2|3275|protein arginine methyltransferase 2##NM_001535|PRMT2|3275|protein arginine methyltransferase 2##NM_206962|PRMT2|3275|protein arginine methyltransferase 2##AK123352|PRMT2|3275|protein arginine methyltransferase 2##AY786414|PRMT2|3275|protein arginine methyltransferase 2##FJ436410|PRMT2|3275|protein arginine methyltransferase 2##FJ436411|PRMT2|3275|protein arginine methyltransferase 2##FJ436412|PRMT2|3275|protein arginine methyltransferase 2##U79286|PRMT2|3275|protein arginine methyltransferase 2##X99209|PRMT2|3275|protein arginine methyltransferase 2##U80213|PRMT2|3275|protein arginine methyltransferase 2##AK312573|PRMT2|3275|protein arginine methyltransferase 2##AL833586|PRMT2|3275|protein arginine methyltransferase 2	0.997713	0.0	denovo_WM_7:-11:0.238	denovo_WM_7:-12:0.238	denovo_WM_7:-13:0.238	denovo_WM_7:-14:0.238
chr6_dbb_hap3	2469219	2469360	reg1003428.p2	8.613	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999601	0.0	
chr5	86491009	86491112	reg1003291.p1	8.611	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-577243	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-577302	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2810396	-	TSC_hg19_v1_chr5_+_86563706 CR749722	72625	+	TSC_hg19_v1_chr5_+_86563831 BC131816	72766	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	73006	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.0	0.0	
chr6	74160717	74160851	reg1003396.p1	8.611	+	AL136751 TSC_hg19_v1_chr6_+_74104600 BC066938 AM393499 AB463006 CU688208	-56172	+	AK303324 TSC_hg19_v1_chr6_+_74104584 AK313686 BC056879	-56203	+	NM_018665	-56500	+	TSC_hg19_v1_chr6_-_74161890 HQ258303	1097	-	BC113606 BC113608 BC143694 BC012928 TSC_hg19_v1_chr6_-_74162011 AK097148 BC108714	1210	-	TSC_hg19_v1_chr6_-_74162038 NM_138441	1274	-	AL136751|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##BC066938|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##AM393499|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##AK303324|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##AK313686|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##BC056879|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##NM_018665|DDX43|55510|DEAD (Asp-Glu-Ala-Asp) box polypeptide 43##HQ258303|MB21D1|115004|Mab-21 domain containing 1##BC113606|MB21D1|115004|Mab-21 domain containing 1##BC113608|MB21D1|115004|Mab-21 domain containing 1##BC143694|MB21D1|115004|Mab-21 domain containing 1##BC012928|MB21D1|115004|Mab-21 domain containing 1##AK097148|MB21D1|115004|Mab-21 domain containing 1##BC108714|MB21D1|115004|Mab-21 domain containing 1##NM_138441|MB21D1|115004|Mab-21 domain containing 1	2.010717	0.0	denovo_WM_7:-37:0.456	denovo_WM_7:-63:0.785
chr6	134273002	134273145	reg1002607.p1	8.609	+	TSC_hg19_v1_chr6_+_134210277 AF035718 AF047419 BC025697	-62803	+	TSC_hg19_v1_chr6_+_134210250 NM_198392 NM_003206	-62819	+	BC030588 Y17114 TSC_hg19_v1_chr6_+_133562518 BC041063	-710541	+	NM_001253676 AK292320 TSC_hg19_v1_chr6_+_134273421	291	+	TSC_hg19_v1_chr6_+_134274364 NM_004865 AK313645 BC000381 AF136570 AF130312 AB020881 BC017559	1272	+	CU687054 AK226098 BC070149 AY046419 AL833602 AK122628 BX648889 NM_145176	100630	-	AF035718|TCF21|6943|transcription factor 21##AF047419|TCF21|6943|transcription factor 21##BC025697|TCF21|6943|transcription factor 21##NM_198392|TCF21|6943|transcription factor 21##NM_003206|TCF21|6943|transcription factor 21##BC030588|EYA4|2070|eyes absent homolog 4 (Drosophila)##Y17114|EYA4|2070|eyes absent homolog 4 (Drosophila)##BC041063|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_001253676|TBPL1|9519|TBP-like 1##AK292320|TBPL1|9519|TBP-like 1##NM_004865|TBPL1|9519|TBP-like 1##AK313645|TBPL1|9519|TBP-like 1##BC000381|TBPL1|9519|TBP-like 1##AF136570|TBPL1|9519|TBP-like 1##AF130312|TBPL1|9519|TBP-like 1##AB020881|TBPL1|9519|TBP-like 1##BC017559|TBPL1|9519|TBP-like 1##AK226098|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##BC070149|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##AY046419|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##AL833602|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##AK122628|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##BX648889|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##NM_145176|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12	0.022789	0.0	
chr4	80994853	80995013	reg1000800.p2	8.607	+	TSC_hg19_v1_chr4_-_80994394 NM_001145794 NM_058172 BC107876	-466	-	TSC_hg19_v1_chr4_-_80994237 AK091721 AX747144	-696	-	AB527650 AY233452 TSC_hg19_v1_chr4_-_80993874 AY040326 BC114374 AB209913	-1045	-	AF275815 NM_020226	111490	+	TSC_hg19_v1_chr4_+_81118656 NM_001099403 BC071584 AK292137 BC027929	123721	+	NM_004464 NM_033143 AK312065 TSC_hg19_v1_chr4_+_81187819 AK291962 AF535149 AF171928 M37825 BC131502 BC074858 BC074859 AB016517 AB463636 AF355187	192926	+	NM_001145794|ANTXR2|118429|anthrax toxin receptor 2##NM_058172|ANTXR2|118429|anthrax toxin receptor 2##BC107876|ANTXR2|118429|anthrax toxin receptor 2##AY233452|ANTXR2|118429|anthrax toxin receptor 2##AY040326|ANTXR2|118429|anthrax toxin receptor 2##BC114374|ANTXR2|118429|anthrax toxin receptor 2##AB209913|ANTXR2|118429|anthrax toxin receptor 2##AF275815|PRDM8|56978|PR domain containing 8##NM_020226|PRDM8|56978|PR domain containing 8##NM_001099403|PRDM8|56978|PR domain containing 8##BC071584|PRDM8|56978|PR domain containing 8##AK292137|PRDM8|56978|PR domain containing 8##BC027929|PRDM8|56978|PR domain containing 8##NM_004464|FGF5|2250|fibroblast growth factor 5##NM_033143|FGF5|2250|fibroblast growth factor 5##AK312065|FGF5|2250|fibroblast growth factor 5##AK291962|FGF5|2250|fibroblast growth factor 5##AF535149|FGF5|2250|fibroblast growth factor 5##AF171928|FGF5|2250|fibroblast growth factor 5##M37825|FGF5|2250|fibroblast growth factor 5##BC131502|FGF5|2250|fibroblast growth factor 5##BC074858|FGF5|2250|fibroblast growth factor 5##BC074859|FGF5|2250|fibroblast growth factor 5##AB016517|FGF5|2250|fibroblast growth factor 5##AF355187|FGF5|2250|fibroblast growth factor 5	0.0	0.0	
chr3	150316204	150316362	reg1000533.p1	8.606	+	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-51697	+	AF212241 AK298586 TSC_hg19_v1_chr3_+_150264573 AK027356 AK293993 NM_032025	-51739	+	TSC_hg19_v1_chr3_-_150264284 AK093929 AF136975 AK098135 AK090933 NM_014445	-51930	-	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	4693	-	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	4872	+	AK093375 AX748085 BC036239 BC029577 NM_152394	105446	-	BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF212241|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK298586|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK027356|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK293993|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##NM_032025|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093929|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AF136975|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK098135|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK090933|SERP1|27230|stress-associated endoplasmic reticulum protein 1##NM_014445|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A	0.998964	0.0	
chr1	9712607	9712699	reg1002208.p1	8.604	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-849	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-63697	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-113017	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	171242	-	TSC_hg19_v1_chr1_-_9884023 AK304813	171368	-	TSC_hg19_v1_chr1_-_9884024 BC033902	171391	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	0.0	0.0	
chr5	130715521	130715660	reg1003458.p1	8.603	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-115790	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-115822	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-115834	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	255167	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	255229	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	255288	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.993234	0.0	denovo_WM_7:27:0.944
chr15	81344558	81344662	reg1002487.p1	8.602	+	TSC_hg19_v1_chr15_+_81293344 NM_022566	-51266	+	D42039 TSC_hg19_v1_chr15_-_81282157 AK301416 AK026606 BC009210 BC012746 AY359110 NM_015154	-62410	-	TSC_hg19_v1_chr15_+_81071711 AB103330 AK000465 AY581148 AY581149 AY585237 NM_018689 BC020256	-272889	+	AK302120 BC062471 NM_173528 AK307565	82017	+	AK124725 NM_001172128 AK124565 AK131530	144608	+	NM_172217 AY324389	173079	+	NM_022566|MESDC1|59274|mesoderm development candidate 1##D42039|MESDC2|23184|mesoderm development candidate 2##AK026606|MESDC2|23184|mesoderm development candidate 2##BC009210|MESDC2|23184|mesoderm development candidate 2##BC012746|MESDC2|23184|mesoderm development candidate 2##AY359110|MESDC2|23184|mesoderm development candidate 2##NM_015154|MESDC2|23184|mesoderm development candidate 2##AB103330|KIAA1199|57214|KIAA1199##AK000465|KIAA1199|57214|KIAA1199##AY581148|KIAA1199|57214|KIAA1199##AY581149|KIAA1199|57214|KIAA1199##NM_018689|KIAA1199|57214|KIAA1199##BC020256|KIAA1199|57214|KIAA1199##AK302120|C15orf26|161502|chromosome 15 open reading frame 26##BC062471|C15orf26|161502|chromosome 15 open reading frame 26##NM_173528|C15orf26|161502|chromosome 15 open reading frame 26##AK307565|C15orf26|161502|chromosome 15 open reading frame 26##AK124725|IL16|3603|interleukin 16##NM_001172128|IL16|3603|interleukin 16##AK124565|IL16|3603|interleukin 16##AK131530|IL16|3603|interleukin 16##NM_172217|IL16|3603|interleukin 16##AY324389|IL16|3603|interleukin 16	0.682329	0.0	denovo_WM_7:27:0.227	denovo_WM_7:29:0.233
chr1	62902342	62902480	reg1003744.p1	8.599	+	BC040140 BC018745 NM_003368	-58	+	NM_001017415 NM_001017416	-437	+	TSC_hg19_v1_chr1_-_62785084 AB284127 BC060866 NM_181712	-117332	-	TSC_hg19_v1_chr1_+_62902702 BC050525	267	+	TSC_hg19_v1_chr1_+_62902719 AK312423 BC011881	308	+	TSC_hg19_v1_chr1_+_62902747 BC032364 AB208893 AF117386 AB014458	476	+	BC040140|USP1|7398|ubiquitin specific peptidase 1##BC018745|USP1|7398|ubiquitin specific peptidase 1##NM_003368|USP1|7398|ubiquitin specific peptidase 1##NM_001017415|USP1|7398|ubiquitin specific peptidase 1##NM_001017416|USP1|7398|ubiquitin specific peptidase 1##AB284127|KANK4|163782|KN motif and ankyrin repeat domains 4##BC060866|KANK4|163782|KN motif and ankyrin repeat domains 4##NM_181712|KANK4|163782|KN motif and ankyrin repeat domains 4##BC050525|USP1|7398|ubiquitin specific peptidase 1##AK312423|USP1|7398|ubiquitin specific peptidase 1##BC011881|USP1|7398|ubiquitin specific peptidase 1##BC032364|USP1|7398|ubiquitin specific peptidase 1##AB208893|USP1|7398|ubiquitin specific peptidase 1##AF117386|USP1|7398|ubiquitin specific peptidase 1##AB014458|USP1|7398|ubiquitin specific peptidase 1	0.0	0.0	
chr1	82226323	82226438	reg1003241.p2	8.599	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-454453	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-2753953	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-3110882	+	AF104266 AF104938 AF104939 NM_012302	39701	+	AK097722 TSC_hg19_v1_chr1_-_84326308	2099888	-	TSC_hg19_v1_chr1_-_84326677 BC036594	2100296	-	BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.99768	0.665411	CTCF.p2:1:0.665	denovo_WM_7:32:0.527	denovo_WM_7:33:0.470
chr12	57670854	57670988	reg1004408.p1	8.598	+	AK300688 BC008069 AK057013 AK311513 NM_145064	-25985	-	TSC_hg19_v1_chr12_-_57642922 CU675915	-27941	-	BC011910 NM_020142 AK094275	-36421	-	TSC_hg19_v1_chr12_-_57674254 X85326	3356	-	AB384552 TSC_hg19_v1_chr12_-_57693218	22261	-	NM_014925	33324	-	AK300688|STAC3|246329|SH3 and cysteine rich domain 3##BC008069|STAC3|246329|SH3 and cysteine rich domain 3##AK057013|STAC3|246329|SH3 and cysteine rich domain 3##AK311513|STAC3|246329|SH3 and cysteine rich domain 3##NM_145064|STAC3|246329|SH3 and cysteine rich domain 3##BC011910|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##NM_020142|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##AK094275|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##NM_014925|R3HDM2|22864|R3H domain containing 2	0.989802	0.997751	CTCF.p2:8:0.998	denovo_WM_7:-27:0.236	denovo_WM_7:-28:0.236	denovo_WM_7:-29:0.236	denovo_WM_7:-30:0.236
chr18	3512018	3512147	reg1003589.p1	8.597	+	NM_173211	-58311	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-60451	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-62002	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	82060	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	333248	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	362202	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.993527	0.0	denovo_WM_7:-12:0.980
chr12	105089374	105089535	reg1003639.p1	8.594	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-238367	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-238646	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-238683	+	TSC_hg19_v1_chr12_+_105153261 AF131762	63823	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	232809	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	290636	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.0	0.0	
chr3	4515801	4515894	reg1002610.p2	8.594	+	TSC_hg19_v1_chr3_-_4508955 NM_001164674 NM_001164675 NM_182760	-6884	-	AK295240 TSC_hg19_v1_chr3_-_4508953 BC121122 BC121123	-6895	-	TSC_hg19_v1_chr3_-_4508945 AY358092 AK075459	-6904	-	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	19184	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	19281	+	TSC_hg19_v1_chr3_+_4535164 BC144563	19349	+	NM_001164674|SUMF1|285362|sulfatase modifying factor 1##NM_001164675|SUMF1|285362|sulfatase modifying factor 1##NM_182760|SUMF1|285362|sulfatase modifying factor 1##AK295240|SUMF1|285362|sulfatase modifying factor 1##BC121122|SUMF1|285362|sulfatase modifying factor 1##BC121123|SUMF1|285362|sulfatase modifying factor 1##AY358092|SUMF1|285362|sulfatase modifying factor 1##AK075459|SUMF1|285362|sulfatase modifying factor 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1	1.970549	0.0	denovo_WM_7:35:0.809	denovo_WM_7:54:0.444	denovo_WM_7:55:0.455
chr1	113009107	113009232	reg1003179.p2	8.593	+	TSC_hg19_v1_chr1_+_112938871 BC016029 AK022544 AK092791 AX747733	-70301	+	NM_018704 TSC_hg19_v1_chr1_+_112938844 AK023340	-70343	+	AY863198 AF120491 NM_004980 NM_172198	-477447	-	AB045116 NM_004185	870	+	BC141825 NM_024494	42200	+	TSC_hg19_v1_chr1_+_113161808 BX648738	152624	+	BC016029|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK022544|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK092791|LOC100129406|100129406|uncharacterized LOC100129406##NM_018704|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK023340|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AF120491|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_004980|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_172198|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##AB045116|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_004185|WNT2B|7482|wingless-type MMTV integration site family, member 2B##BC141825|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_024494|WNT2B|7482|wingless-type MMTV integration site family, member 2B##BX648738|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1	0.080822	0.0	
chr15	92401247	92401387	reg1002786.p1	8.593	+	TSC_hg19_v1_chr15_+_92397563 AK097797 AK310306	-3750	+	TSC_hg19_v1_chr15_+_92397119 BC000585 AK290872 AF187816 CU674284 DQ891954 DQ895140	-4220	+	TSC_hg19_v1_chr15_+_92396937 NM_001145044 NM_013272 AB031050 AF205074	-4374	+	TSC_hg19_v1_chr15_+_92937110 NM_006011 AK313924 BC069584 BC096202 BC096203 BC096204 BC096205 U82762 U33551	535882	+	AK057393 NM_153040	613589	+	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	797562	-	AK097797|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AK310306|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##BC000585|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AK290872|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AF187816|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##DQ891954|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##DQ895140|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##NM_001145044|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##NM_013272|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AB031050|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AF205074|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##NM_006011|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK313924|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC069584|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096202|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096203|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096204|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096205|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U82762|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U33551|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B	0.842534	0.0	denovo_WM_7:34:0.828
chr19	1874666	1874846	reg1003182.p1	8.592	+	TSC_hg19_v1_chr19_-_1863556 NM_031918	-11200	-	TSC_hg19_v1_chr19_-_1863441 AF327440	-11296	-	TSC_hg19_v1_chr19_-_1848471 BC032244 NM_020695	-26295	-	TSC_hg19_v1_chr19_-_1876169 BC067908	1410	-	BC011667 TSC_hg19_v1_chr19_-_1885409	10636	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	10689	-	NM_031918|KLF16|83855|Kruppel-like factor 16##AF327440|KLF16|83855|Kruppel-like factor 16##BC032244|REXO1|57455|REX1, RNA exonuclease 1 homolog (S. cerevisiae)##NM_020695|REXO1|57455|REX1, RNA exonuclease 1 homolog (S. cerevisiae)##BC011667|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1	2.211587	0.0	denovo_WM_7:-1:0.331	denovo_WM_7:-2:0.653	denovo_WM_7:12:0.323	denovo_WM_7:13:0.645
chr13	45885380	45885560	reg1003097.p1	8.591	+	AK290675 NM_198404	-110296	-	TSC_hg19_v1_chr13_+_45694647 BC001771 X16901 AB527978 EU831971 EU832064 BT019525 X59745	-190752	+	TSC_hg19_v1_chr13_+_45694638 NM_004128 AK291545	-190856	+	TSC_hg19_v1_chr13_-_45914246 L13806 CU692614	28812	-	AY334563 CR457036 CU680324 TSC_hg19_v1_chr13_-_45915253	29767	-	BC012431 TSC_hg19_v1_chr13_-_45915280 X64899 BC040008 NM_003295 X16064 AF072098 BC007842 BC003352 BC052333	29822	-	AK290675|KCTD4|386618|potassium channel tetramerisation domain containing 4##NM_198404|KCTD4|386618|potassium channel tetramerisation domain containing 4##BC001771|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##X16901|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##EU831971|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##EU832064|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##BT019525|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##X59745|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##NM_004128|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##AK291545|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##L13806|TPT1|7178|tumor protein, translationally-controlled 1##AY334563|TPT1|7178|tumor protein, translationally-controlled 1##CR457036|TPT1|7178|tumor protein, translationally-controlled 1##BC012431|TPT1|7178|tumor protein, translationally-controlled 1##X64899|TPT1|7178|tumor protein, translationally-controlled 1##BC040008|TPT1|7178|tumor protein, translationally-controlled 1##NM_003295|TPT1|7178|tumor protein, translationally-controlled 1##X16064|TPT1|7178|tumor protein, translationally-controlled 1##BC007842|TPT1|7178|tumor protein, translationally-controlled 1##BC003352|TPT1|7178|tumor protein, translationally-controlled 1##BC052333|TPT1|7178|tumor protein, translationally-controlled 1	1.99472	0.640321	denovo_WM_7:0:0.269	denovo_WM_7:-1:0.359	denovo_WM_7:15:0.289	denovo_WM_7:16:0.378	CTCF.p2:-99:0.640
chr3	108771832	108772012	reg1003327.p1	8.590	+	AF110003 EU832759 GQ129299 AF110002 BC103993 BC103994 AB593147 NM_005459	-99311	-	AK291991 AJ240085 AF161547 NM_016388 BC025713 AJ224878	-230328	+	HQ258043 AM050721 BC113502 BC113528 BC069318 AF290873 AF323084 AY358655 NM_032579 TSC_hg19_v1_chr3_-_108476258	-295777	-	CU690636 BC050307 AK302642 AF084946 BC028680 NM_014429	65028	-	AK026416 TSC_hg19_v1_chr3_+_108855566	83641	+	BC018070 AY283672 NM_138815	263379	-	AF110003|GUCA1C|9626|guanylate cyclase activator 1C##EU832759|GUCA1C|9626|guanylate cyclase activator 1C##GQ129299|GUCA1C|9626|guanylate cyclase activator 1C##AF110002|GUCA1C|9626|guanylate cyclase activator 1C##BC103993|GUCA1C|9626|guanylate cyclase activator 1C##BC103994|GUCA1C|9626|guanylate cyclase activator 1C##AB593147|GUCA1C|9626|guanylate cyclase activator 1C##NM_005459|GUCA1C|9626|guanylate cyclase activator 1C##AK291991|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ240085|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AF161547|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##NM_016388|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##BC025713|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ224878|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##HQ258043|RETNLB|84666|resistin like beta##AM050721|RETNLB|84666|resistin like beta##BC113502|RETNLB|84666|resistin like beta##BC113528|RETNLB|84666|resistin like beta##BC069318|RETNLB|84666|resistin like beta##AF290873|RETNLB|84666|resistin like beta##AF323084|RETNLB|84666|resistin like beta##AY358655|RETNLB|84666|resistin like beta##NM_032579|RETNLB|84666|resistin like beta##BC050307|MORC1|27136|MORC family CW-type zinc finger 1##AK302642|MORC1|27136|MORC family CW-type zinc finger 1##AF084946|MORC1|27136|MORC family CW-type zinc finger 1##BC028680|MORC1|27136|MORC family CW-type zinc finger 1##NM_014429|MORC1|27136|MORC family CW-type zinc finger 1##AK026416|FLJ22763|401081|uncharacterized LOC401081##BC018070|DPPA2|151871|developmental pluripotency associated 2##AY283672|DPPA2|151871|developmental pluripotency associated 2##NM_138815|DPPA2|151871|developmental pluripotency associated 2	0.994545	0.0	denovo_WM_7:39:0.239	denovo_WM_7:40:0.239	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239
chr11	62308984	62309110	reg1003933.p1	8.589	+	AK312165 NM_003357 BC004481 U01101 DQ893375 DQ896769 X13197 AB590371 CR541780	-122511	+	TSC_hg19_v1_chr11_+_62104919 AK313069 AK091894 AX747239 AK297158 AK090908 AX746674 AK309845 BC064963 BC093070 AF411076 BC021295 AK225802	-204099	+	NM_001083926 NM_025080 TSC_hg19_v1_chr11_+_62104878	-204222	+	TSC_hg19_v1_chr11_-_62314221 BC012477 BC000926 AK095346	5189	-	TSC_hg19_v1_chr11_-_62314314 AK300376 BC128460 NM_001620 NM_024060	5267	-	DQ185040 BT006677 CR407625 BC006509 BC006520 CU674184 CU677463 CU680700 BC000384 DQ891103 DQ894284 Z11531 AB527934 BC009865 BC015813 BC018857 BC018853 BC028179 TSC_hg19_v1_chr11_-_62341334 BC013918 AK092787 AK299876 AY542307 BC067738 AK129569 AK129618 AK300729 X63526 AK130026 AK300686 BC031012	32277	-	AK312165|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##NM_003357|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC004481|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##U01101|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ893375|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ896769|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##X13197|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##CR541780|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##AK313069|ASRGL1|80150|asparaginase like 1##AK091894|ASRGL1|80150|asparaginase like 1##AK297158|ASRGL1|80150|asparaginase like 1##AK090908|ASRGL1|80150|asparaginase like 1##AK309845|ASRGL1|80150|asparaginase like 1##BC064963|ASRGL1|80150|asparaginase like 1##BC093070|ASRGL1|80150|asparaginase like 1##AF411076|ASRGL1|80150|asparaginase like 1##BC021295|ASRGL1|80150|asparaginase like 1##AK225802|ASRGL1|80150|asparaginase like 1##NM_001083926|ASRGL1|80150|asparaginase like 1##NM_025080|ASRGL1|80150|asparaginase like 1##BC012477|AHNAK|79026|AHNAK nucleoprotein##BC000926|AHNAK|79026|AHNAK nucleoprotein##AK095346|AHNAK|79026|AHNAK nucleoprotein##AK300376|AHNAK|79026|AHNAK nucleoprotein##BC128460|AHNAK|79026|AHNAK nucleoprotein##NM_001620|AHNAK|79026|AHNAK nucleoprotein##NM_024060|AHNAK|79026|AHNAK nucleoprotein##DQ185040|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BT006677|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##CR407625|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006509|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006520|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC000384|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ891103|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ894284|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##Z11531|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC009865|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC015813|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018857|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018853|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC028179|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC013918|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK092787|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK299876|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AY542307|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC067738|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129569|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129618|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300729|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##X63526|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK130026|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300686|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC031012|EEF1G|1937|eukaryotic translation elongation factor 1 gamma	0.631091	0.0	denovo_WM_7:19:0.479
chr6	7086947	7087099	reg1002840.p1	8.587	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-361862	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-498073	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-766113	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	20803	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	21012	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	21200	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	0.976525	0.0	denovo_WM_7:26:0.809
chr9	126298732	126298857	reg1003152.p1	8.587	+	NM_173689 AK123000 DQ426866 AY720432	-180301	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-267906	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-267974	-	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	393517	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	475089	+	TSC_hg19_v1_chr9_+_126774046 BC034458	475277	+	NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC034458|LHX2|9355|LIM homeobox 2	0.995336	0.0	denovo_WM_7:-39:0.437	denovo_WM_7:-40:0.437
chr16	69472442	69472612	reg1003083.p2	8.585	+	BC004373 AK291576 TSC_hg19_v1_chr16_+_69458565	-13963	+	TSC_hg19_v1_chr16_+_69458522 AB009282 NM_030579 BX647922 BC014431	-14011	+	TSC_hg19_v1_chr16_-_69419884 AF002999 BC024890 NM_005652	-52667	-	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	127341	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	127389	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	127654	+	BC004373|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AK291576|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AB009282|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##NM_030579|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BX647922|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BC014431|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AF002999|TERF2|7014|telomeric repeat binding factor 2##BC024890|TERF2|7014|telomeric repeat binding factor 2##NM_005652|TERF2|7014|telomeric repeat binding factor 2##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive	1.762941	0.0	denovo_WM_7:-12:0.982	denovo_WM_7:-85:0.261
chr15	66148278	66148432	reg1002989.p1	8.584	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-63762	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-63882	-	AF062922 NM_004727	-234086	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	13492	+	TSC_hg19_v1_chr15_-_66321664 AK054827	173338	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	397722	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	1.996248	0.0	denovo_WM_7:47:0.305	denovo_WM_7:48:0.244	denovo_WM_7:65:0.258	denovo_WM_7:66:0.319
chr2	231791302	231791453	reg1003560.p2	8.584	+	BC032694 NM_005683	-1437	-	TSC_hg19_v1_chr2_+_231729704 AY049777 EU831609 EU831632 EU831696 EU832488 EU832568 AB003629 CR457208	-61655	+	TSC_hg19_v1_chr2_+_231729669 AK056321 AK222697 AK307702 AL136603 BC050668 BC002424 AL713651 BC025742 AK295503 BC098563	-61699	+	NM_139073 AK093385 AX748090 BC036248 AK126086 BC047704 CU690472	69515	+	TSC_hg19_v1_chr2_+_231902259 NM_001144994	110860	+	TSC_hg19_v1_chr2_+_231921588 NM_001191037 NM_002807 AK307415 BC094720	130200	+	BC032694|GPR55|9290|G protein-coupled receptor 55##NM_005683|GPR55|9290|G protein-coupled receptor 55##AY049777|ITM2C|81618|integral membrane protein 2C##EU831609|ITM2C|81618|integral membrane protein 2C##EU831632|ITM2C|81618|integral membrane protein 2C##EU831696|ITM2C|81618|integral membrane protein 2C##EU832488|ITM2C|81618|integral membrane protein 2C##EU832568|ITM2C|81618|integral membrane protein 2C##AB003629|ITM2C|81618|integral membrane protein 2C##CR457208|ITM2C|81618|integral membrane protein 2C##AK056321|ITM2C|81618|integral membrane protein 2C##AK222697|ITM2C|81618|integral membrane protein 2C##AK307702|ITM2C|81618|integral membrane protein 2C##AL136603|ITM2C|81618|integral membrane protein 2C##BC050668|ITM2C|81618|integral membrane protein 2C##BC002424|ITM2C|81618|integral membrane protein 2C##AL713651|ITM2C|81618|integral membrane protein 2C##BC025742|ITM2C|81618|integral membrane protein 2C##AK295503|ITM2C|81618|integral membrane protein 2C##BC098563|ITM2C|81618|integral membrane protein 2C##NM_139073|SPATA3|130560|spermatogenesis associated 3##AK093385|SPATA3|130560|spermatogenesis associated 3##BC036248|SPATA3|130560|spermatogenesis associated 3##AK126086|SPATA3|130560|spermatogenesis associated 3##BC047704|SPATA3|130560|spermatogenesis associated 3##NM_001144994|C2orf72|257407|chromosome 2 open reading frame 72##NM_001191037|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##NM_002807|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307415|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC094720|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	1.668156	0.253963	denovo_WM_7:23:0.681	denovo_WM_7:38:0.707	CTCF.p2:-46:0.254
chrX	115009607	115009787	reg1000007.p2	8.584	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-181829	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-212655	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-214091	+	BC003645 TSC_hg19_v1_chrX_-_115085443	75742	-	AK313927 NM_000686 X87723 U16957	292298	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	558070	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chrX	11843017	11843179	reg1002490.p1	8.584	+	NM_006800 AK025642	-65351	+	NM_001193270 AK300814	-66381	+	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	-66755	+	AB002314 NM_014728 AK289694	313492	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	966399	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	966470	+	NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AB002314|FRMPD4|9758|FERM and PDZ domain containing 4##NM_014728|FRMPD4|9758|FERM and PDZ domain containing 4##AK289694|FRMPD4|9758|FERM and PDZ domain containing 4##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2	0.996728	0.0	denovo_WM_7:-16:0.527	denovo_WM_7:-17:0.470
chr1	64600201	64600379	reg1003518.p2	8.583	+	TSC_hg19_v1_chr1_+_64239705 AK308088 BC080541 NM_001083592 NM_005012 BC006374 M97675	-360631	+	NM_001172818 AK300100	-511397	+	AK293298 NM_001172819 AK298505	-540776	+	BC029895 NM_152489	69199	+	NM_020925 TSC_hg19_v1_chr1_+_64936560	336228	+	TSC_hg19_v1_chr1_+_65210850 AB046799 NM_018211 AB463230	610509	+	AK308088|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC080541|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_001083592|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_005012|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC006374|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##M97675|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_001172818|PGM1|5236|phosphoglucomutase 1##AK300100|PGM1|5236|phosphoglucomutase 1##AK293298|PGM1|5236|phosphoglucomutase 1##NM_001172819|PGM1|5236|phosphoglucomutase 1##AK298505|PGM1|5236|phosphoglucomutase 1##BC029895|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)##NM_152489|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)##NM_020925|CACHD1|57685|cache domain containing 1##AB046799|RAVER2|55225|ribonucleoprotein, PTB-binding 2##NM_018211|RAVER2|55225|ribonucleoprotein, PTB-binding 2	0.0	0.0	
chr8	29939823	29939948	reg1002721.p1	8.583	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-731815	-	AL137704 NM_057158	-733564	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-819271	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	589	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	687	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	13058	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.996668	0.0	denovo_WM_7:-24:0.826
chr17	58220385	58220512	reg1003585.p3	8.582	+	TSC_hg19_v1_chr17_-_58213006 AK311448	-7437	-	TSC_hg19_v1_chr17_-_58156283 AK127708 AK314655 BC119771 BC119813 BX640819 BX640831 CR627418 NM_022070 AF349752	-64094	-	BC006971 TSC_hg19_v1_chr17_-_58042099 AK294806 AK296197 NM_016125	-178341	-	TSC_hg19_v1_chr17_+_58227302 BC057792 NM_000717 AK289715 AK298710	6842	+	TSC_hg19_v1_chr17_+_58227333 BC069649 M83670 BC074768 CR541766 CU691238	6914	+	CU691084 TSC_hg19_v1_chr17_-_58469313 BC054344	248870	-	AK127708|HEATR6|63897|HEAT repeat containing 6##AK314655|HEATR6|63897|HEAT repeat containing 6##BC119771|HEATR6|63897|HEAT repeat containing 6##BC119813|HEATR6|63897|HEAT repeat containing 6##BX640819|HEATR6|63897|HEAT repeat containing 6##BX640831|HEATR6|63897|HEAT repeat containing 6##CR627418|HEATR6|63897|HEAT repeat containing 6##NM_022070|HEATR6|63897|HEAT repeat containing 6##AF349752|HEATR6|63897|HEAT repeat containing 6##BC006971|RNFT1|51136|ring finger protein, transmembrane 1##AK294806|RNFT1|51136|ring finger protein, transmembrane 1##AK296197|RNFT1|51136|ring finger protein, transmembrane 1##NM_016125|RNFT1|51136|ring finger protein, transmembrane 1##BC057792|CA4|762|carbonic anhydrase IV##NM_000717|CA4|762|carbonic anhydrase IV##AK289715|CA4|762|carbonic anhydrase IV##AK298710|CA4|762|carbonic anhydrase IV##BC069649|CA4|762|carbonic anhydrase IV##M83670|CA4|762|carbonic anhydrase IV##BC074768|CA4|762|carbonic anhydrase IV##CR541766|CA4|762|carbonic anhydrase IV##BC054344|USP32|84669|ubiquitin specific peptidase 32	0.0	0.9714	CTCF.p2:-29:0.971
chr16	9744156	9744336	reg1003489.p2	8.581	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-558643	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-558706	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-686951	-	BC143273 U09002 NM_001134408	531587	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	531942	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	532431	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	1.250146	0.0	denovo_WM_7:2:0.425	denovo_WM_7:3:0.212	denovo_WM_7:-53:0.489
chr1	12244322	12244469	reg1004356.p1	8.580	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	-17284	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	-17334	+	D86042 BC063482 NM_152942 BC073839 BC141804	-58379	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	45712	+	TSC_hg19_v1_chr1_+_12403045 AK057675	158675	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	433188	-	AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3	0.999792	0.014417	denovo_WM_7:15:0.898
chr13	50028933	50029070	reg1003476.p1	8.579	+	BC047434 NM_001160308 AK307593	-3271	+	TSC_hg19_v1_chr13_+_50018555 AK308354	-10418	+	TSC_hg19_v1_chr13_+_50018457 NM_031915 AK308220 AF334407	-10531	+	AK293242 NM_001040443	40771	+	AB011031 TSC_hg19_v1_chr13_+_50070102 AK026228 AK300410 BC017212 AB527905 DQ891958 DQ895148	41115	+	NM_001040444 AK225986	41528	+	BC047434|SETDB2|83852|SET domain, bifurcated 2##NM_001160308|SETDB2|83852|SET domain, bifurcated 2##AK307593|SETDB2|83852|SET domain, bifurcated 2##AK308354|SETDB2|83852|SET domain, bifurcated 2##NM_031915|SETDB2|83852|SET domain, bifurcated 2##AK308220|SETDB2|83852|SET domain, bifurcated 2##AF334407|SETDB2|83852|SET domain, bifurcated 2##AK293242|PHF11|51131|PHD finger protein 11##NM_001040443|PHF11|51131|PHD finger protein 11##AB011031|PHF11|51131|PHD finger protein 11##AK026228|PHF11|51131|PHD finger protein 11##AK300410|PHF11|51131|PHD finger protein 11##BC017212|PHF11|51131|PHD finger protein 11##DQ891958|PHF11|51131|PHD finger protein 11##DQ895148|PHF11|51131|PHD finger protein 11##NM_001040444|PHF11|51131|PHD finger protein 11##AK225986|PHF11|51131|PHD finger protein 11	0.016002	0.0	
chr15	50399850	50400010	reg1003917.p1	8.578	+	TSC_hg19_v1_chr15_+_49913254 NM_001144955 NM_020234 BC018028 AF168717 AK290184 BC093073 BC032535	-486681	+	BC048125 BC048139 AK057362 NM_152647	-486847	-	NM_002009 BC010956 AK313160 M60828 S81661	-684514	+	AB075819 TSC_hg19_v1_chr15_-_50405521	5586	-	TSC_hg19_v1_chr15_-_50411492 BC144298 BC144297 NM_024837	11536	-	TSC_hg19_v1_chr15_+_50474425 AK290262 NM_001159629 NM_003645 AF096290 AK222859 D88308 AK223145 BC057770 CU691220	74560	+	NM_001144955|DTWD1|56986|DTW domain containing 1##NM_020234|DTWD1|56986|DTW domain containing 1##BC018028|DTWD1|56986|DTW domain containing 1##AF168717|DTWD1|56986|DTW domain containing 1##AK290184|DTWD1|56986|DTW domain containing 1##BC093073|DTWD1|56986|DTW domain containing 1##BC032535|DTWD1|56986|DTW domain containing 1##BC048125|C15orf33|196951|chromosome 15 open reading frame 33##BC048139|C15orf33|196951|chromosome 15 open reading frame 33##AK057362|C15orf33|196951|chromosome 15 open reading frame 33##NM_152647|C15orf33|196951|chromosome 15 open reading frame 33##NM_002009|FGF7|2252|fibroblast growth factor 7##BC010956|FGF7|2252|fibroblast growth factor 7##AK313160|FGF7|2252|fibroblast growth factor 7##M60828|FGF7|2252|fibroblast growth factor 7##S81661|FGF7|2252|fibroblast growth factor 7##AB075819|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC144298|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC144297|ATP8B4|79895|ATPase, class I, type 8B, member 4##NM_024837|ATP8B4|79895|ATPase, class I, type 8B, member 4##AK290262|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_001159629|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_003645|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AF096290|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK222859|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##D88308|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK223145|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC057770|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2	0.0	0.0	
chr5	170794417	170794548	reg1002696.p1	8.575	+	BC017291 NM_021025 DQ892654 DQ895893 DQ896085	-58154	+	TSC_hg19_v1_chr5_+_170289029 AJ271459 AJ288952 AJ288953 AJ288954 AJ288955 BC030953 AF222747 AB527205 AL832980	-505460	+	TSC_hg19_v1_chr5_+_170288885 AK298785 NM_022897 AK315159	-505551	+	NM_001037738 NM_002520 NM_199185 TSC_hg19_v1_chr5_+_170814855 D28343 AK290652 BC008495 BC107754 BC012566 BC021668 DQ303464 BC016716 BC016768 BC016824 BC021983 BC014349 BC002398 M23613 M26697 BC020467 BC050628 M28699 AY740634 AY740635 AY740636 AY740637 AY740638 AY740639 AY740640 BC063542	20315	+	AB042278 AB451236 AB451361 AB463949 BT007011 CU676967 CU677717 CU680364 CU692436 DQ892032 DQ895223 EF429251 X16934 TSC_hg19_v1_chr5_+_170815031	20509	+	AY358811 AF075292 NM_003862	52180	+	BC017291|TLX3|30012|T-cell leukemia homeobox 3##NM_021025|TLX3|30012|T-cell leukemia homeobox 3##DQ892654|TLX3|30012|T-cell leukemia homeobox 3##DQ895893|TLX3|30012|T-cell leukemia homeobox 3##DQ896085|TLX3|30012|T-cell leukemia homeobox 3##AJ271459|RANBP17|64901|RAN binding protein 17##AJ288952|RANBP17|64901|RAN binding protein 17##AJ288953|RANBP17|64901|RAN binding protein 17##AJ288954|RANBP17|64901|RAN binding protein 17##AJ288955|RANBP17|64901|RAN binding protein 17##BC030953|RANBP17|64901|RAN binding protein 17##AF222747|RANBP17|64901|RAN binding protein 17##AL832980|RANBP17|64901|RAN binding protein 17##AK298785|RANBP17|64901|RAN binding protein 17##NM_022897|RANBP17|64901|RAN binding protein 17##AK315159|RANBP17|64901|RAN binding protein 17##NM_001037738|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##NM_002520|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##NM_199185|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##D28343|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AK290652|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC008495|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC107754|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC012566|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC021668|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ303464|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC016716|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC016768|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC016824|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC021983|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC014349|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC002398|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##M23613|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##M26697|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC020467|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC050628|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##M28699|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740634|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740635|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740636|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740637|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740638|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740639|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740640|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB042278|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB451236|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB451361|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BT007011|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ892032|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ895223|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##EF429251|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##X16934|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY358811|FGF18|8817|fibroblast growth factor 18##AF075292|FGF18|8817|fibroblast growth factor 18##NM_003862|FGF18|8817|fibroblast growth factor 18	2.126227	0.0	
chr12	122650974	122651099	reg1003346.p1	8.571	+	BC069272 TSC_hg19_v1_chr12_+_122614551	-36516	+	TSC_hg19_v1_chr12_+_122516682 AF312918	-134319	+	TSC_hg19_v1_chr12_+_122516655 BC151841 NM_014938	-134429	+	AK124107 NM_152759	1229	+	AB590927 BC132998 BC133000 AY499343 NM_001014336	7698	-	TSC_hg19_v1_chr12_+_122667676 NM_001098519	16638	+	BC069272|MLXIP|22877|MLX interacting protein##AF312918|MLXIP|22877|MLX interacting protein##BC151841|MLXIP|22877|MLX interacting protein##NM_014938|MLXIP|22877|MLX interacting protein##AK124107|LRRC43|254050|leucine rich repeat containing 43##NM_152759|LRRC43|254050|leucine rich repeat containing 43##BC132998|IL31|386653|interleukin 31##BC133000|IL31|386653|interleukin 31##AY499343|IL31|386653|interleukin 31##NM_001014336|IL31|386653|interleukin 31##NM_001098519|LRRC43|254050|leucine rich repeat containing 43	0.978459	0.0	denovo_WM_7:-55:0.311	denovo_WM_7:-56:0.311	denovo_WM_7:-57:0.311
chr16	50228517	50228641	reg1002802.p1	8.569	+	TSC_hg19_v1_chr16_+_50186838 AK300918 NM_001040284 NM_001040285	-41744	+	TSC_hg19_v1_chr16_+_50099915 AK289949 BC018730 BC033077	-128619	+	NM_182922 TSC_hg19_v1_chr16_+_50099906 AF462442 AK000725 BC014415	-128686	+	AK093706 TSC_hg19_v1_chr16_+_50300480 BC028085	71897	+	TSC_hg19_v1_chr16_+_50308041 BC039891	79474	+	NM_001114 D25538	93244	+	AK300918|PAPD5|64282|PAP associated domain containing 5##NM_001040284|PAPD5|64282|PAP associated domain containing 5##NM_001040285|PAPD5|64282|PAP associated domain containing 5##AK289949|HEATR3|55027|HEAT repeat containing 3##BC018730|HEATR3|55027|HEAT repeat containing 3##BC033077|HEATR3|55027|HEAT repeat containing 3##NM_182922|HEATR3|55027|HEAT repeat containing 3##AF462442|HEATR3|55027|HEAT repeat containing 3##AK000725|HEATR3|55027|HEAT repeat containing 3##BC014415|HEATR3|55027|HEAT repeat containing 3##AK093706|ADCY7|113|adenylate cyclase 7##BC039891|ADCY7|113|adenylate cyclase 7##NM_001114|ADCY7|113|adenylate cyclase 7##D25538|ADCY7|113|adenylate cyclase 7	0.996889	0.0	
chr12	98618762	98618938	reg1003779.p1	8.567	+	BC027605 NM_001135175	-1317607	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	-1317819	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-1824533	-	TSC_hg19_v1_chr12_-_98897622 AK126817	278777	-	TSC_hg19_v1_chr12_+_98909388 NM_001032283 NM_001032284 NM_003276 BC050383 BC053675	290517	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	290557	+	BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK126817|LOC643770|643770|uncharacterized LOC643770##NM_001032283|TMPO|7112|thymopoietin##NM_001032284|TMPO|7112|thymopoietin##NM_003276|TMPO|7112|thymopoietin##BC050383|TMPO|7112|thymopoietin##BC053675|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin	0.0	0.0	
chr4	110365504	110365656	reg1003145.p1	8.566	+	TSC_hg19_v1_chr4_+_110354993 BC040137 AK300278	-10405	+	BC117135 BC143268 BC143269 BC143276 TSC_hg19_v1_chr4_+_110354970 NM_001042734 NM_006323	-10632	+	TSC_hg19_v1_chr4_-_110354918 BC009800	-10637	-	TSC_hg19_v1_chr4_+_110481443 NM_017918 AK291098 BC002633 AK095936 AK311030	115837	+	AB590350 DQ894589 EU176306 U20537 TSC_hg19_v1_chr4_-_110624602 BC000305 BC004460 NM_001226 NM_032992 U20536	259011	-	DQ892725 DQ896860 CU677869 TSC_hg19_v1_chr4_-_110651216 AF306567 AF332892 AY359024 BC017218 AK075389 AK313081 NM_030821	285542	-	BC040137|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##AK300278|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC117135|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143268|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143269|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC143276|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_001042734|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##NM_006323|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC009800|1/2-SBSRNA4|100533182|lncRNA_BC009800##NM_017918|CCDC109B|55013|coiled-coil domain containing 109B##AK291098|CCDC109B|55013|coiled-coil domain containing 109B##BC002633|CCDC109B|55013|coiled-coil domain containing 109B##AK095936|CCDC109B|55013|coiled-coil domain containing 109B##AK311030|CCDC109B|55013|coiled-coil domain containing 109B##DQ894589|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##EU176306|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20537|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC000305|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##BC004460|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_001226|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##NM_032992|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##U20536|CASP6|839|caspase 6, apoptosis-related cysteine peptidase##DQ892725|PLA2G12A|81579|phospholipase A2, group XIIA##DQ896860|PLA2G12A|81579|phospholipase A2, group XIIA##AF306567|PLA2G12A|81579|phospholipase A2, group XIIA##AF332892|PLA2G12A|81579|phospholipase A2, group XIIA##AY359024|PLA2G12A|81579|phospholipase A2, group XIIA##BC017218|PLA2G12A|81579|phospholipase A2, group XIIA##AK075389|PLA2G12A|81579|phospholipase A2, group XIIA##AK313081|PLA2G12A|81579|phospholipase A2, group XIIA##NM_030821|PLA2G12A|81579|phospholipase A2, group XIIA	0.996492	0.0	
chr9	2053901	2054049	reg1003114.p1	8.566	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-38679	+	AF130729 NM_181872	-1003366	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-1003605	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	567832	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	568099	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	568137	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chr19	45542568	45542723	reg1002812.p2	8.565	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	-322	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-37903	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-83991	+	BC019352 NM_145288	37042	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	39868	+	TSC_hg19_v1_chr19_+_45596205 BC035704	53570	+	AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37	0.91276	0.0	denovo_WM_7:-20:0.620
chr9	114746828	114746989	reg1003150.p1	8.564	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-87441	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-87794	+	AL833535 NM_173521	-201133	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	190612	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	348379	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	348941	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	1.984617	0.0	
chr2	123204516	123204684	reg1002783.p2	8.563	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-691363	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-710135	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-796955	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1578264	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	4209107	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	4209192	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.999584	0.0	denovo_WM_7:24:0.740
chr9	140045530	140045701	reg1002633.p3	8.563	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	-11837	+	TSC_hg19_v1_chr9_+_140032795 L13266	-12808	+	TSC_hg19_v1_chr9_-_140024189 BC018639	-21380	-	TSC_hg19_v1_chr9_-_140063880 EU588721	18267	-	DQ355157 BC140911 TSC_hg19_v1_chr9_-_140064504 NM_001013653	18850	-	AF191337 DQ890852 DQ894007 BC032503 AK296204 TSC_hg19_v1_chr9_-_140083009	37381	-	NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##DQ355157|LRRC26|389816|leucine rich repeat containing 26##BC140911|LRRC26|389816|leucine rich repeat containing 26##NM_001013653|LRRC26|389816|leucine rich repeat containing 26##AF191337|ANAPC2|29882|anaphase promoting complex subunit 2##DQ890852|ANAPC2|29882|anaphase promoting complex subunit 2##DQ894007|ANAPC2|29882|anaphase promoting complex subunit 2##BC032503|ANAPC2|29882|anaphase promoting complex subunit 2##AK296204|ANAPC2|29882|anaphase promoting complex subunit 2	0.0	0.0	
chr13	75932095	75932248	reg1002875.p1	8.562	+	CR749622 TSC_hg19_v1_chr13_-_75901948	-30249	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1223775	-	AF161471 AF113122 NM_007249	-1224182	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	124167	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	179807	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	191753	+	CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	1.093279	0.045349	denovo_WM_7:-25:0.314	denovo_WM_7:-26:0.440
chr5	172428610	172428758	reg1003012.p1	8.561	+	TSC_hg19_v1_chr5_+_172410833 CR456856 CR542131	-17840	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	-17902	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	-42236	+	TSC_hg19_v1_chr5_+_172483354 BX647768 NM_001168393 NM_001168394 NM_153607 AK300043 AY139008 BC041709 AY174896 AK124117 BX647573 AK291677	54700	+	TSC_hg19_v1_chr5_+_172484383 AK297424	55699	+	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	142812	+	CR456856|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR542131|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##BX647768|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168393|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168394|C5orf41|153222|chromosome 5 open reading frame 41##NM_153607|C5orf41|153222|chromosome 5 open reading frame 41##AK300043|C5orf41|153222|chromosome 5 open reading frame 41##AY139008|C5orf41|153222|chromosome 5 open reading frame 41##BC041709|C5orf41|153222|chromosome 5 open reading frame 41##AY174896|C5orf41|153222|chromosome 5 open reading frame 41##AK124117|C5orf41|153222|chromosome 5 open reading frame 41##BX647573|C5orf41|153222|chromosome 5 open reading frame 41##AK291677|C5orf41|153222|chromosome 5 open reading frame 41##AK297424|C5orf41|153222|chromosome 5 open reading frame 41##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1	0.995325	0.0	denovo_WM_7:40:0.554
chr7	74595196	74595325	reg1003024.p2	8.561	+	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-86886	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-105568	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-105622	-	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	272260	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	393310	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	429705	+	NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73	0.995856	0.0	
chr16	79197697	79197848	reg1003558.p1	8.560	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-1064317	+	NM_001244755	-1134787	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-1141322	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	436843	-	AF125108 NM_130897 BC054892 BC035232	1377116	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1640275	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	1.990836	0.012232	denovo_WM_7:15:0.616	denovo_WM_7:16:0.307
chr3	17781781	17781919	reg1003597.p1	8.560	+	AK310539 NM_001134381	-40339	-	BC036392 NM_015184	-807269	+	AB029015 NM_001144382	-855399	+	D86965 NM_014744	548	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	2317	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	684947	-	AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1	0.993846	0.0	denovo_WM_7:-14:0.981
chr3	176902549	176902690	reg1003948.p1	8.559	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-2325529	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-2743899	+	BC032555 NM_014932	-3786376	+	TSC_hg19_v1_chr3_-_176914267 BX648935	11631	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	12332	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	12440	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.997164	0.0	denovo_WM_7:-22:0.976
chr7	23510065	23510227	reg1002976.p1	8.559	+	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	-148	-	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	-467	-	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	-171181	+	TSC_hg19_v1_chr7_+_23530136 BC026177	20021	+	CU677835 DQ892442 DQ895653 AB528532 TSC_hg19_v1_chr7_-_23571604 BC069011 BC017094 U53209 AB097048 AK300565 AK311687 AK314801 AK300741 AK310719 AK298815 NM_013293	61418	-	TSC_hg19_v1_chr7_+_23637005 NM_138771 AK289911 AY358713 AX721042	126869	+	BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32##DQ892442|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##DQ895653|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC069011|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC017094|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##U53209|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AB097048|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300565|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK311687|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK314801|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300741|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK310719|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK298815|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_013293|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_138771|CCDC126|90693|coiled-coil domain containing 126##AK289911|CCDC126|90693|coiled-coil domain containing 126##AY358713|CCDC126|90693|coiled-coil domain containing 126	0.0	0.0	
chr9	127422870	127423046	reg1003457.p2	8.559	+	AK021895 AB074162 BC030772 TSC_hg19_v1_chr9_+_127420713 AB593023	-2254	+	TSC_hg19_v1_chr9_-_127269711 BC032501 NM_004959	-153254	-	AY278562 NM_001161808	-209536	+	HQ692858 HQ709185 TSC_hg19_v1_chr9_-_127533591 U80802 AF004291 NM_001489 NM_033334 S83309 BC030600 BC042395 BC042406	110552	-	TSC_hg19_v1_chr9_+_127539438 AK074709 NM_182487 AB119055 AY358185	116542	+	BC150645 BC171828 BC171830 BC171837 BC127949 TSC_hg19_v1_chr9_+_127615749 NM_001045476	192766	+	AB593023|MIR181A2HG|100379345|MIR181A2 host gene (non-protein coding)##BC032501|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##NM_004959|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##AY278562|GPR144|347088|G protein-coupled receptor 144##NM_001161808|GPR144|347088|G protein-coupled receptor 144##HQ692858|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##HQ709185|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##U80802|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AF004291|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_001489|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_033334|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##S83309|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC030600|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042395|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042406|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AK074709|OLFML2A|169611|olfactomedin-like 2A##NM_182487|OLFML2A|169611|olfactomedin-like 2A##AB119055|OLFML2A|169611|olfactomedin-like 2A##AY358185|OLFML2A|169611|olfactomedin-like 2A##BC150645|WDR38|401551|WD repeat domain 38##BC171828|WDR38|401551|WD repeat domain 38##BC171830|WDR38|401551|WD repeat domain 38##BC171837|WDR38|401551|WD repeat domain 38##BC127949|WDR38|401551|WD repeat domain 38##NM_001045476|WDR38|401551|WD repeat domain 38	0.998121	0.0	
chr1	51712809	51712935	reg1002895.p1	8.558	+	TSC_hg19_v1_chr1_+_51702013 AK313140 AB024703 AF151881 BC020964 AB385089	-10658	+	BC036670 TSC_hg19_v1_chr1_+_51701971 BC047654	-10898	+	TSC_hg19_v1_chr1_+_51701944 NM_014372	-10923	+	BC028374 NM_001080494	75037	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	83360	-	AF007170 NM_001144832	97866	-	AK313140|RNF11|26994|ring finger protein 11##AB024703|RNF11|26994|ring finger protein 11##AF151881|RNF11|26994|ring finger protein 11##BC020964|RNF11|26994|ring finger protein 11##BC036670|RNF11|26994|ring finger protein 11##BC047654|RNF11|26994|ring finger protein 11##NM_014372|RNF11|26994|ring finger protein 11##BC028374|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001080494|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A	0.967968	0.0	denovo_WM_7:14:0.259	denovo_WM_7:15:0.709
chr18	32643976	32644131	reg1002119.p2	8.555	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	-22597	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-85753	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-87094	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	176993	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	226119	-	TSC_hg19_v1_chr18_+_32870279 AK023456 AF159567 AK094216	226251	+	NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK023456|ZNF271|10778|zinc finger protein 271##AF159567|ZNF271|10778|zinc finger protein 271##AK094216|ZNF271|10778|zinc finger protein 271	1.9977	0.0	denovo_WM_7:-62:0.381	denovo_WM_7:-63:0.289
chr11	66882346	66882487	reg1002270.p1	8.553	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	-58076	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	-58130	+	NM_177963 AK289672 AK289727 BC037406	-91564	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	4323	+	AK096194 TSC_hg19_v1_chr11_+_67007484	125068	+	TSC_hg19_v1_chr11_+_67007558 AB490246 AK299725	125167	+	BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##NM_014578|RHOD|29984|ras homolog gene family, member D##NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A##AK096194|LOC100131150|100131150|uncharacterized LOC100131150##AB490246|KDM2A|22992|lysine (K)-specific demethylase 2A##AK299725|KDM2A|22992|lysine (K)-specific demethylase 2A	2.275258	0.0	
chr19	49315376	49315555	reg1003259.p4	8.553	+	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	-1217	-	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-56047	+	D87935 D87936 D87937 NM_000148	-56819	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	24309	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	24458	-	BC064601 AB208908 BC025259 AY007233 BC024157 NM_001161354 NM_020904	56331	-	AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC064601|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AB208908|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC025259|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AY007233|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC024157|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_001161354|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_020904|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	0.994628	0.0	denovo_WM_7:-68:0.239	denovo_WM_7:-69:0.239	denovo_WM_7:-70:0.239	denovo_WM_7:-71:0.239
chr15	59543523	59543672	reg1003911.p1	8.551	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-44545	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-146226	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-184519	+	AB290177 TSC_hg19_v1_chr15_-_59665055	121457	-	TSC_hg19_v1_chr15_-_59665065 AK291688	121469	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	121473	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	0.0	0.0	
chr10	112148062	112148212	reg1003120.p1	8.549	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-83437	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-83544	-	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-162316	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	109614	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	179355	+	AF067163 TSC_hg19_v1_chr10_+_112344155	195978	+	BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3	0.0	0.0	
chr2	230865047	230865227	reg1002075.p1	8.549	+	TSC_hg19_v1_chr2_+_230787218 BC017869 BC022538 NM_174899 BC033935 AK289655 AK309702	-77920	+	TSC_hg19_v1_chr2_-_230786712 AK310971	-78388	-	BC113891 BC114556 TSC_hg19_v1_chr2_-_230786683 D28476 NM_004238 BC037956 AK302468	-78476	-	BC065524 BC034382 AK055356 TSC_hg19_v1_chr2_-_230933641 NM_152527	68529	-	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	219578	-	AK301097 NM_001185015	225306	-	BC017869|FBXO36|130888|F-box protein 36##BC022538|FBXO36|130888|F-box protein 36##NM_174899|FBXO36|130888|F-box protein 36##BC033935|FBXO36|130888|F-box protein 36##AK289655|FBXO36|130888|F-box protein 36##AK309702|FBXO36|130888|F-box protein 36##AK310971|TRIP12|9320|thyroid hormone receptor interactor 12##BC113891|TRIP12|9320|thyroid hormone receptor interactor 12##BC114556|TRIP12|9320|thyroid hormone receptor interactor 12##D28476|TRIP12|9320|thyroid hormone receptor interactor 12##NM_004238|TRIP12|9320|thyroid hormone receptor interactor 12##BC037956|TRIP12|9320|thyroid hormone receptor interactor 12##AK302468|TRIP12|9320|thyroid hormone receptor interactor 12##BC065524|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC034382|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AK055356|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##NM_152527|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein	0.995468	0.0	
chr1	113178114	113178285	reg1003161.p2	8.547	+	TSC_hg19_v1_chr1_+_113162456 BT019364 CR407657 CR541819 DQ890754 DQ893919 U56637	-15734	+	BC000144 TSC_hg19_v1_chr1_+_113162453 AK223226	-15748	+	TSC_hg19_v1_chr1_+_113162439 AK289654	-15766	+	TSC_hg19_v1_chr1_+_113217108 AL833353 NM_001130079 NM_020963 AK310512 AK226011	38916	+	TSC_hg19_v1_chr1_+_113217295 AK023297 AB046851 BX647787 BC009312 BC025339 AK074174	39133	+	BC002548 TSC_hg19_v1_chr1_+_113217490	39279	+	BT019364|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR407657|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR541819|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ890754|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ893919|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##U56637|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##BC000144|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK223226|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK289654|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AL833353|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_001130079|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_020963|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK310512|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK226011|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK023297|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AB046851|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BX647787|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC009312|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC025339|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK074174|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC002548|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)	0.99834	0.0	denovo_WM_7:-14:0.457	denovo_WM_7:-15:0.457
chrX	153316765	153316884	reg1003216.p2	8.546	+	TSC_hg19_v1_chrX_-_153285340 BC054000 L76191 NM_001025242 NM_001025243 NM_001569	-31487	-	AF346607 DQ054788 AM392624 AM393211 EU831427 EU831520 AB463802 TSC_hg19_v1_chrX_-_153285300 BC014963	-31529	-	NM_003492	-78834	+	BC062546 TSC_hg19_v1_chrX_-_153363132 AF158180 AY541280	46236	-	TSC_hg19_v1_chrX_-_153363173 AK289444	46334	-	TSC_hg19_v1_chrX_-_153363175 BX538060 AB209464 GQ203293 GQ203294 GQ203295 GQ896382 GU479943 HM020402 HM156732 HM156733 HQ141378 HQ154629 NM_001110792 NM_004992	46356	-	BC054000|IRAK1|3654|interleukin-1 receptor-associated kinase 1##L76191|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025242|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025243|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001569|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AF346607|IRAK1|3654|interleukin-1 receptor-associated kinase 1##DQ054788|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM392624|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM393211|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831427|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831520|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC014963|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_003492|TMEM187|8269|transmembrane protein 187##BC062546|LOC728653|728653|uncharacterized LOC728653##AF158180|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##AY541280|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##AK289444|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##BX538060|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##AB209464|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##GQ203293|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##GQ203294|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##GQ203295|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##GQ896382|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##GU479943|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##HM020402|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##HM156732|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##HM156733|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##HQ141378|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##HQ154629|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##NM_001110792|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##NM_004992|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)	0.990878	0.061951	denovo_WM_7:-45:0.606	denovo_WM_7:-46:0.324
chr6	135484382	135484562	reg1002620.p2	8.545	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-108478	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-108584	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-213240	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	17976	+	TSC_hg19_v1_chr6_+_135502507 BC064955	18023	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	18114	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	1.94221	0.0	denovo_WM_7:-25:0.953	denovo_WM_7:-40:0.963
chr12	113340140	113340290	reg1003138.p1	8.544	+	AK316112 TSC_hg19_v1_chr12_+_113229745 BC017259	-110486	+	NM_001143854 NM_014954	-110667	+	S39383 TSC_hg19_v1_chr12_+_112924353	-415896	+	NM_001032409 NM_002534 NM_016816 TSC_hg19_v1_chr12_+_113344763 X04371 BC000562 AK291003 BC071981 AK225384 D00068	4552	+	AJ629455 X02874 BC061587 TSC_hg19_v1_chr12_+_113344822 AK223006 AK301498 AY730627 AY730628 AB590117 BT006785 DQ891892 DQ895079 AK300346	4618	+	TSC_hg19_v1_chr12_+_113376159 AB044545	35882	+	AK316112|RPH3A|22895|rabphilin 3A homolog (mouse)##BC017259|RPH3A|22895|rabphilin 3A homolog (mouse)##NM_001143854|RPH3A|22895|rabphilin 3A homolog (mouse)##NM_014954|RPH3A|22895|rabphilin 3A homolog (mouse)##S39383|PTPN11|5781|protein tyrosine phosphatase, non-receptor type 11##NM_001032409|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##NM_002534|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##NM_016816|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##X04371|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##BC000562|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK291003|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##BC071981|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK225384|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##D00068|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AJ629455|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##X02874|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##BC061587|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK223006|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK301498|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AY730627|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AY730628|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##BT006785|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##DQ891892|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##DQ895079|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AK300346|OAS1|4938|2'-5'-oligoadenylate synthetase 1, 40/46kDa##AB044545|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa	1.996248	0.0	denovo_WM_7:-50:0.305	denovo_WM_7:-51:0.244	denovo_WM_7:-68:0.258	denovo_WM_7:-69:0.319
chr15	23081557	23081690	reg1003345.p2	8.544	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-47207	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-47256	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-47289	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	4751	-	BC025678 NM_001142275	5219	-	TSC_hg19_v1_chr15_-_23115247 BC044583	33625	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	0.999425	0.0	
chr6	68797749	68797873	reg1002865.p2	8.542	+	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	-198783	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	-2380718	-	AY358133 NM_198283 AK310478	-2508106	-	AL833240 TSC_hg19_v1_chr6_-_69345026	547161	-	TSC_hg19_v1_chr6_+_69345227 NM_001704 AB011122 AK289696	547590	+	TSC_hg19_v1_chr6_-_70506472 AB074281	1708666	-	AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##NM_001704|BAI3|577|brain-specific angiogenesis inhibitor 3##AB011122|BAI3|577|brain-specific angiogenesis inhibitor 3##AK289696|BAI3|577|brain-specific angiogenesis inhibitor 3##AB074281|LMBRD1|55788|LMBR1 domain containing 1	0.830943	0.0	denovo_WM_7:-4:0.790
chr18	13608152	13608305	reg1002994.p1	8.540	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-389443	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-616883	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-660164	+	NM_001003674 NM_001003675	3436	+	AF009426 AF009427 NM_004338 NM_181483	12638	+	TSC_hg19_v1_chr18_-_13726549 AK055618	118278	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.990296	0.0	denovo_WM_7:-63:0.783
chr19	38469589	38469769	reg1002831.p1	8.538	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-71767	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-71822	+	AK302913 AY026504 AK128826 NM_031951	-72405	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	245156	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	250637	-	TSC_hg19_v1_chr19_-_38720336 AK297581	250655	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.0	0.0	
chr2	65260429	65260580	reg1003091.p1	8.538	+	TSC_hg19_v1_chr2_+_65216532 AK223486 AK313052 BC072423 BC026216 L14595 L19444 AB026689 DQ891127 DQ894306	-43854	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	-44013	+	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	-44904	+	TSC_hg19_v1_chr2_+_65283579 AB011154 NM_015147 AK093846 AK000856 AK299373 AK304110 AK301173 AK098786 BX648774 BC030534 BC002982 BC004873	23056	+	AF498929 BT019528 BT019529 CR533479 CR536488 AB464118 AB590355 AM392684 CU674450 DQ894084 EU831590 EU831675 TSC_hg19_v1_chr2_-_65357083 M28209	96571	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	96715	-	AK223486|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK313052|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC072423|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC026216|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L14595|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L19444|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB026689|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ891127|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ894306|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB011154|CEP68|23177|centrosomal protein 68kDa##NM_015147|CEP68|23177|centrosomal protein 68kDa##AK093846|CEP68|23177|centrosomal protein 68kDa##AK000856|CEP68|23177|centrosomal protein 68kDa##AK299373|CEP68|23177|centrosomal protein 68kDa##AK304110|CEP68|23177|centrosomal protein 68kDa##AK301173|CEP68|23177|centrosomal protein 68kDa##AK098786|CEP68|23177|centrosomal protein 68kDa##BX648774|CEP68|23177|centrosomal protein 68kDa##BC030534|CEP68|23177|centrosomal protein 68kDa##BC002982|CEP68|23177|centrosomal protein 68kDa##BC004873|CEP68|23177|centrosomal protein 68kDa##AF498929|RAB1A|5861|RAB1A, member RAS oncogene family##BT019528|RAB1A|5861|RAB1A, member RAS oncogene family##BT019529|RAB1A|5861|RAB1A, member RAS oncogene family##CR533479|RAB1A|5861|RAB1A, member RAS oncogene family##CR536488|RAB1A|5861|RAB1A, member RAS oncogene family##AM392684|RAB1A|5861|RAB1A, member RAS oncogene family##DQ894084|RAB1A|5861|RAB1A, member RAS oncogene family##EU831590|RAB1A|5861|RAB1A, member RAS oncogene family##EU831675|RAB1A|5861|RAB1A, member RAS oncogene family##M28209|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family	0.993643	0.020189	
chr6	34724364	34724497	reg1003298.p1	8.538	+	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	-59804	-	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	-59884	-	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-200334	-	NM_003093	440	+	TSC_hg19_v1_chr6_+_34725281 AK311955 AK223098 BC121082 BC121083 X12517	858	+	TSC_hg19_v1_chr6_+_34759793 NM_017754 BC026164	35340	+	NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##AK311955|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##AK223098|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##BC121082|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##BC121083|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##X12517|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##NM_017754|UHRF1BP1|54887|UHRF1 binding protein 1##BC026164|UHRF1BP1|54887|UHRF1 binding protein 1	0.99174	0.0	denovo_WM_7:39:0.331	denovo_WM_7:40:0.331	denovo_WM_7:41:0.331
chr7	48677107	48677287	reg1000538.p2	8.538	+	AK126220 AY204751 BX647273 NM_152701	-466142	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	-548242	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	-548397	+	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	1136073	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	1455627	-	NM_001161834	1458484	+	AK126220|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##AY204751|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##NM_152701|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72	0.032576	0.0	
chr11	58941905	58942062	reg1002555.p1	8.537	+	TSC_hg19_v1_chr11_+_58940008 AB023154 AB385405	-1954	+	TSC_hg19_v1_chr11_+_58939648 NM_015177	-2298	+	NM_022074 NM_198847 AK291453 BC071759 AK092061 AX747338	-29704	+	TSC_hg19_v1_chr11_-_58980401 BC104997 BC112230 AK097881 AK074166 AK301210 NM_001039396	38424	-	BC140917 NM_001004729	189924	+	NM_001001954 BC136991	248453	-	AB023154|DTX4|23220|deltex homolog 4 (Drosophila)##NM_015177|DTX4|23220|deltex homolog 4 (Drosophila)##NM_022074|FAM111A|63901|family with sequence similarity 111, member A##NM_198847|FAM111A|63901|family with sequence similarity 111, member A##AK291453|FAM111A|63901|family with sequence similarity 111, member A##BC071759|FAM111A|63901|family with sequence similarity 111, member A##AK092061|FAM111A|63901|family with sequence similarity 111, member A##BC104997|MPEG1|219972|macrophage expressed 1##BC112230|MPEG1|219972|macrophage expressed 1##AK097881|MPEG1|219972|macrophage expressed 1##AK074166|MPEG1|219972|macrophage expressed 1##NM_001039396|MPEG1|219972|macrophage expressed 1##BC140917|OR5AN1|390195|olfactory receptor, family 5, subfamily AN, member 1##NM_001004729|OR5AN1|390195|olfactory receptor, family 5, subfamily AN, member 1##NM_001001954|OR5A2|219981|olfactory receptor, family 5, subfamily A, member 2##BC136991|OR5A2|219981|olfactory receptor, family 5, subfamily A, member 2	0.972272	0.0	denovo_WM_7:-2:0.447	denovo_WM_7:-3:0.398
chr9	45069905	45070027	reg1003979.p1	8.535	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1385123	+	NM_001145196	-1439237	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-1936479	-	TSC_hg19_v1_chr9_+_45441926 BC006438	371960	+	BC040528 NM_001113541 NM_015667	20439643	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21387335	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.999132	0.0	denovo_WM_7:-41:0.239	denovo_WM_7:-42:0.239	denovo_WM_7:-43:0.239	denovo_WM_7:-44:0.239
chr1	17921656	17921811	reg1003863.p1	8.534	+	TSC_hg19_v1_chr1_+_17906948 NM_001011722 BC117171 BC143347 DQ139833 HQ258640	-14718	+	TSC_hg19_v1_chr1_+_17866365 AB046846 NM_018125 AK311076	-55373	+	TSC_hg19_v1_chr1_+_17846826 AK129959	-74910	+	AK092020 AX747316 AK300264 TSC_hg19_v1_chr1_+_17944871	23132	+	AK057339 NM_030812 BC028909 U20582	160113	+	TSC_hg19_v1_chr1_+_18434291 AK075316 NM_032880 BC007618	512544	+	NM_001011722|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##BC117171|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##BC143347|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##DQ139833|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##HQ258640|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AB046846|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##NM_018125|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK311076|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK129959|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK092020|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK300264|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK057339|ACTL8|81569|actin-like 8##NM_030812|ACTL8|81569|actin-like 8##BC028909|ACTL8|81569|actin-like 8##U20582|ACTL8|81569|actin-like 8##AK075316|IGSF21|84966|immunoglobin superfamily, member 21##NM_032880|IGSF21|84966|immunoglobin superfamily, member 21##BC007618|IGSF21|84966|immunoglobin superfamily, member 21	0.999345	0.0	
chr12	4969094	4969254	reg1003418.p1	8.534	+	NM_002235 X17622 TSC_hg19_v1_chr12_+_4918486	-50759	+	AJ271385 NM_017417 BC140888 BC140889	-139406	+	TSC_hg19_v1_chr12_+_4758272 NM_005002 BC015837 AF050641 AK308588 BC009311 AK291067 BC111546 L04490	-210896	+	TSC_hg19_v1_chr12_+_5019070 NM_000217	49886	+	M55513 NM_002234 BC096357 BC096358 BC099665 BC099666 M60451 M83254	183945	+	TSC_hg19_v1_chr12_+_5541277 AK293895 NM_001102654	572102	+	NM_002235|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##X17622|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##AJ271385|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_017417|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140888|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140889|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_005002|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC015837|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AF050641|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AK308588|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC009311|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AK291067|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC111546|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##L04490|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##NM_000217|KCNA1|3736|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)##M55513|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_002234|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096357|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096358|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099665|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099666|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M60451|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M83254|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##AK293895|NTF3|4908|neurotrophin 3##NM_001102654|NTF3|4908|neurotrophin 3	1.183743	0.0	denovo_WM_7:-23:0.275	denovo_WM_7:-24:0.710
chr20	35471899	35472038	reg1003266.p1	8.533	+	TSC_hg19_v1_chr20_-_35444558 AK131491	-27348	-	AK057056 TSC_hg19_v1_chr20_-_35407842	-64192	-	TSC_hg19_v1_chr20_-_35402167 BC035821 AK093031 AX747868 AK290738 NM_001145316 NM_024918 AK301671 AK301840 BC058899 AK023408 BC026011 NM_001145315 NM_001145317 NM_001145318	-69783	-	AK126630 NM_199181	16307	-	TSC_hg19_v1_chr20_-_35492072 NM_080627	20166	-	TSC_hg19_v1_chr20_+_35504544 BC127688 BC130646 BC130648 AK123544 NM_080628 HQ258755	32581	+	AK131491|KIAA0889|140710|KIAA0889##AK057056|KIAA0889|140710|KIAA0889##BC035821|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK093031|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK290738|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145316|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_024918|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301671|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301840|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC058899|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK023408|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC026011|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145315|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145317|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145318|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK126630|KIAA0889|140710|KIAA0889##NM_199181|KIAA0889|140710|KIAA0889##NM_080627|KIAA0889|140710|KIAA0889##BC127688|C20orf118|140711|chromosome 20 open reading frame 118##BC130646|C20orf118|140711|chromosome 20 open reading frame 118##BC130648|C20orf118|140711|chromosome 20 open reading frame 118##AK123544|C20orf118|140711|chromosome 20 open reading frame 118##NM_080628|C20orf118|140711|chromosome 20 open reading frame 118##HQ258755|C20orf118|140711|chromosome 20 open reading frame 118	0.0	0.03895	
chr11	67211380	67211548	reg1002591.p2	8.532	+	NM_001018070	-173	-	TSC_hg19_v1_chr11_-_67210953 AB209579 AK309267 AK000860 NM_020441	-497	-	TSC_hg19_v1_chr11_-_67210939 BC006449 AK315399 AK295782	-535	-	AY569571 BC119779 BC122869 NM_206997	8735	-	AY039217 NM_145200	11353	+	AK310743 TSC_hg19_v1_chr11_-_67236717 AK296988 AY007143 BC013883 BC051854 BC125134 AK303342 NM_001078650 NM_001078651 NM_025124 AK025402	25237	-	NM_001018070|CORO1B|57175|coronin, actin binding protein, 1B##AK309267|CORO1B|57175|coronin, actin binding protein, 1B##AK000860|CORO1B|57175|coronin, actin binding protein, 1B##NM_020441|CORO1B|57175|coronin, actin binding protein, 1B##BC006449|CORO1B|57175|coronin, actin binding protein, 1B##AK315399|CORO1B|57175|coronin, actin binding protein, 1B##AK295782|CORO1B|57175|coronin, actin binding protein, 1B##AY569571|GPR152|390212|G protein-coupled receptor 152##BC119779|GPR152|390212|G protein-coupled receptor 152##BC122869|GPR152|390212|G protein-coupled receptor 152##NM_206997|GPR152|390212|G protein-coupled receptor 152##AY039217|CABP4|57010|calcium binding protein 4##NM_145200|CABP4|57010|calcium binding protein 4##AK310743|TMEM134|80194|transmembrane protein 134##AK296988|TMEM134|80194|transmembrane protein 134##AY007143|TMEM134|80194|transmembrane protein 134##BC013883|TMEM134|80194|transmembrane protein 134##BC051854|TMEM134|80194|transmembrane protein 134##BC125134|TMEM134|80194|transmembrane protein 134##AK303342|TMEM134|80194|transmembrane protein 134##NM_001078650|TMEM134|80194|transmembrane protein 134##NM_001078651|TMEM134|80194|transmembrane protein 134##NM_025124|TMEM134|80194|transmembrane protein 134##AK025402|TMEM134|80194|transmembrane protein 134	0.995711	0.0	
chr21	37486426	37486590	reg1003132.p1	8.530	+	TSC_hg19_v1_chr21_+_37442321 AK294142 J04056 AK308691 AK311219 BC015640 AK314879 BC002511 DQ892353 DQ895559 BT019843 CR541708	-44153	+	AB124848 TSC_hg19_v1_chr21_+_37442272 NM_001757	-44255	+	BC036556 TSC_hg19_v1_chr21_-_37432809 AK300009 NM_017438	-53692	-	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	20841	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	42123	-	AJ237839 NM_005128	50330	+	AK294142|CBR1|873|carbonyl reductase 1##J04056|CBR1|873|carbonyl reductase 1##AK308691|CBR1|873|carbonyl reductase 1##AK311219|CBR1|873|carbonyl reductase 1##BC015640|CBR1|873|carbonyl reductase 1##AK314879|CBR1|873|carbonyl reductase 1##BC002511|CBR1|873|carbonyl reductase 1##DQ892353|CBR1|873|carbonyl reductase 1##DQ895559|CBR1|873|carbonyl reductase 1##BT019843|CBR1|873|carbonyl reductase 1##CR541708|CBR1|873|carbonyl reductase 1##AB124848|CBR1|873|carbonyl reductase 1##NM_001757|CBR1|873|carbonyl reductase 1##BC036556|SETD4|54093|SET domain containing 4##AK300009|SETD4|54093|SET domain containing 4##NM_017438|SETD4|54093|SET domain containing 4##AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2	0.999319	0.0	
chr13	42067177	42067310	reg1004050.p1	8.527	+	TSC_hg19_v1_chr13_+_42031690 BC038706 AF036549	-35543	+	TSC_hg19_v1_chr13_+_42031685 BC066334	-35560	+	TSC_hg19_v1_chr13_+_42031539 NM_014059	-35692	+	TSC_hg19_v1_chr13_-_42535066 AK095155	467837	-	TSC_hg19_v1_chr13_-_42535247 AB590583 BC131802 BC053674 NM_001009814 NM_015058	467946	-	AK289546 NM_001204504	546928	+	BC038706|C13orf15|28984|chromosome 13 open reading frame 15##AF036549|C13orf15|28984|chromosome 13 open reading frame 15##BC066334|C13orf15|28984|chromosome 13 open reading frame 15##NM_014059|C13orf15|28984|chromosome 13 open reading frame 15##AK095155|KIAA0564|23078|KIAA0564##BC131802|KIAA0564|23078|KIAA0564##BC053674|KIAA0564|23078|KIAA0564##NM_001009814|KIAA0564|23078|KIAA0564##NM_015058|KIAA0564|23078|KIAA0564##AK289546|DGKH|160851|diacylglycerol kinase, eta##NM_001204504|DGKH|160851|diacylglycerol kinase, eta	0.97058	0.0	denovo_WM_7:13:0.322	denovo_WM_7:14:0.649
chr5	123817161	123817328	reg1003343.p2	8.526	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-969362	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1058100	-	NM_001136239 AK297992 AF272898 AF272899	-1392400	+	BC131507 AB033107 BC151226 NM_020747	263544	-	NM_001146319 AK316288 AK300154	1878570	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1941599	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr7	101855035	101855164	reg1002752.p1	8.526	+	M74099 NM_181552	-394218	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-395890	+	BC002778 NM_138403	-582524	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	73298	+	TSC_hg19_v1_chr7_+_101928431 AB000520	73344	+	NM_001146210	141789	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.998881	0.0	
chr1	87523120	87523297	reg1003870.p1	8.525	+	AB007917 TSC_hg19_v1_chr1_+_87380462	-142751	+	TSC_hg19_v1_chr1_+_87380374 BC025384 BC025990 NM_001134492 NM_012262 AK023260 AB024568 BC108735	-142855	+	TSC_hg19_v1_chr1_-_87380011 NM_004261 NM_203341	-143151	-	TSC_hg19_v1_chr1_+_87595568 BC030523	72341	+	NM_006769 U24576 TSC_hg19_v1_chr1_+_87794164	270949	+	AK292578 TSC_hg19_v1_chr1_+_87794564	271351	+	AB007917|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC025384|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC025990|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_001134492|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_012262|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##AK023260|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##AB024568|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC108735|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_004261|SEP15|9403|15 kDa selenoprotein##NM_203341|SEP15|9403|15 kDa selenoprotein##BC030523|LOC339524|339524|uncharacterized LOC339524##NM_006769|LMO4|8543|LIM domain only 4##U24576|LMO4|8543|LIM domain only 4##AK292578|LMO4|8543|LIM domain only 4	0.99951	0.0	denovo_WM_7:48:0.425	denovo_WM_7:49:0.425
chr8	29387367	29387515	reg1003627.p1	8.525	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-179371	-	AL137704 NM_057158	-181120	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-266827	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	553033	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	553131	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	565502	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.0	0.0	
chr1	198626689	198626854	reg1003394.p1	8.523	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-18441	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-18546	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-18598	+	TSC_hg19_v1_chr1_-_198906559 EF413001	279776	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1370098	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1384953	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	1.747915	0.0	denovo_WM_7:11:0.788	denovo_WM_7:-101:0.437
chr13	95309201	95309342	reg1003909.p1	8.523	+	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-55169	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-60775	-	TSC_hg19_v1_chr13_-_95248407 AY544125 AF048686 AK313251 BC033675	-60842	-	X65666 X71136 AB464716 NM_007084	55047	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	644441	-	NM_001160100 NM_182848 AK055855	776583	+	NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AY544125|TGDS|23483|TDP-glucose 4,6-dehydratase##AF048686|TGDS|23483|TDP-glucose 4,6-dehydratase##AK313251|TGDS|23483|TDP-glucose 4,6-dehydratase##BC033675|TGDS|23483|TDP-glucose 4,6-dehydratase##X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10	0.980395	0.0	denovo_WM_7:0:0.421	denovo_WM_7:-1:0.421
chr4	69852870	69853018	reg1003440.p1	8.523	+	HQ258456 BC130533 AY358727 AY542891 NM_024743	-35451	-	TSC_hg19_v1_chr4_+_69681710 BC113649 AK222839 AK222872 AK292738 AK298432 NM_001075 NM_001144767 X63359	-171226	+	U06641 U08854 AF548389 AK289419 AF180322 BC171879 NM_001076	-316541	-	NM_001075 NM_001144767	33168	-	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	109270	+	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	227513	-	HQ258456|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC130533|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY358727|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY542891|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##NM_024743|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##U06641|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##U08854|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##AF548389|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##AK289419|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##AF180322|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##BC171879|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##NM_001076|UGT2B15|7366|UDP glucuronosyltransferase 2 family, polypeptide B15##NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10	0.997218	0.0	denovo_WM_7:6:0.841
chr19	12714572	12714719	reg1003037.p2	8.522	+	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	-52372	-	TSC_hg19_v1_chr19_-_12595631 NM_152601	-119017	-	BC136746 BC136751 AK290911 TSC_hg19_v1_chr19_-_12595603 BC036481	-119069	-	AB385437 CU691590 EU446833 BC038586 AB033024 NM_020714 TSC_hg19_v1_chr19_-_12721628	6916	-	AK307775 NM_153358 AK298597 TSC_hg19_v1_chr19_+_12721749 AX721060 AK074877 AK297715 BC106937 BC106938	7119	+	TSC_hg19_v1_chr19_-_12777530 U68382 U68567 AB209921 DQ891878 DQ895066 AB527181 U60266 BC000736	62867	-	BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564##NM_152601|ZNF709|163051|zinc finger protein 709##BC136746|ZNF709|163051|zinc finger protein 709##BC136751|ZNF709|163051|zinc finger protein 709##AK290911|ZNF709|163051|zinc finger protein 709##BC036481|ZNF709|163051|zinc finger protein 709##EU446833|ZNF490|57474|zinc finger protein 490##BC038586|ZNF490|57474|zinc finger protein 490##AB033024|ZNF490|57474|zinc finger protein 490##NM_020714|ZNF490|57474|zinc finger protein 490##AK307775|ZNF791|163049|zinc finger protein 791##NM_153358|ZNF791|163049|zinc finger protein 791##AK298597|ZNF791|163049|zinc finger protein 791##AK074877|ZNF791|163049|zinc finger protein 791##AK297715|ZNF791|163049|zinc finger protein 791##BC106937|ZNF791|163049|zinc finger protein 791##BC106938|ZNF791|163049|zinc finger protein 791##U68382|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U68567|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AB209921|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ891878|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ895066|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U60266|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##BC000736|MAN2B1|4125|mannosidase, alpha, class 2B, member 1	0.996829	0.0	denovo_WM_7:-34:0.975
chr2	170616638	170616786	reg1003177.p1	8.521	+	TSC_hg19_v1_chr2_+_170590477 BC010437	-26225	+	TSC_hg19_v1_chr2_+_170590371 NM_144711 AX721220	-26377	+	TSC_hg19_v1_chr2_+_170550978 AK314915 NM_001008489 NM_001199285 NM_001199286 NM_001199287 NM_001199288 NM_001199290 BC106013 AK090653 AX746559	-65695	+	NM_003142 TSC_hg19_v1_chr2_+_170655388 BC020818 D28394 J04205 BC001289 DQ185046 X13697	38704	+	TSC_hg19_v1_chr2_+_170662051 M20328 M35261	45432	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	64673	-	BC010437|KLHL23|151230|kelch-like 23 (Drosophila)##NM_144711|KLHL23|151230|kelch-like 23 (Drosophila)##AK314915|PHOSPHO2|493911|phosphatase, orphan 2##NM_001008489|PHOSPHO2|493911|phosphatase, orphan 2##NM_001199285|PHOSPHO2|493911|phosphatase, orphan 2##NM_001199286|PHOSPHO2|493911|phosphatase, orphan 2##NM_001199287|PHOSPHO2|493911|phosphatase, orphan 2##NM_001199288|PHOSPHO2|493911|phosphatase, orphan 2##NM_001199290|PHOSPHO2-KLHL23|100526832|PHOSPHO2-KLHL23 readthrough##BC106013|PHOSPHO2|493911|phosphatase, orphan 2##AK090653|PHOSPHO2-KLHL23|100526832|PHOSPHO2-KLHL23 readthrough##AX746559|PHOSPHO2-KLHL23|100526832|PHOSPHO2-KLHL23 readthrough##NM_003142|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC020818|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##D28394|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##J04205|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC001289|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##DQ185046|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##X13697|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M20328|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M35261|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5	0.473415	0.0	denovo_WM_7:28:0.438
chr6	76459696	76459846	reg1002274.p1	8.521	+	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-762	+	TSC_hg19_v1_chr6_+_76458926 NM_004999 BX647397 BC012598	-855	+	AF307849 AB018340 TSC_hg19_v1_chr6_+_76312226 AF306508 AF196304	-147563	+	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	322528	-	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	1713378	-	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	3117484	+	AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_004999|MYO6|4646|myosin VI##BX647397|MYO6|4646|myosin VI##BC012598|MYO6|4646|myosin VI##AF307849|SENP6|26054|SUMO1/sentrin specific peptidase 6##AB018340|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF306508|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF196304|SENP6|26054|SUMO1/sentrin specific peptidase 6##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1	0.995666	0.0	denovo_WM_7:51:0.456	denovo_WM_7:52:0.456
chr10	74854950	74855115	reg1000514.p1	8.520	+	AK311349 TSC_hg19_v1_chr10_-_74714574	-140460	-	AF349540 BC093996 BC111946 BC143532 AY358032 NM_032562 AF339053 AK313712 TSC_hg19_v1_chr10_-_74714543	-140521	-	AK096435 NM_152635 BC126440 AY358339 AY013707 TSC_hg19_v1_chr10_+_74653529	-201599	+	TSC_hg19_v1_chr10_-_74856621 M24486 M24487 AK312593 AK222960 BC034998	1573	-	TSC_hg19_v1_chr10_-_74856725 NM_000917 NM_001017962 NM_001142595 NM_001142596	1738	-	NM_015901 BC031224 AK303235 TSC_hg19_v1_chr10_+_74870272 AK300980 AK309755 AK316538 BC046173 BC038833	15219	+	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB##AF349540|PLA2G12B|84647|phospholipase A2, group XIIB##BC093996|PLA2G12B|84647|phospholipase A2, group XIIB##BC111946|PLA2G12B|84647|phospholipase A2, group XIIB##BC143532|PLA2G12B|84647|phospholipase A2, group XIIB##AY358032|PLA2G12B|84647|phospholipase A2, group XIIB##NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB##AF339053|PLA2G12B|84647|phospholipase A2, group XIIB##AK313712|PLA2G12B|84647|phospholipase A2, group XIIB##AK096435|OIT3|170392|oncoprotein induced transcript 3##NM_152635|OIT3|170392|oncoprotein induced transcript 3##BC126440|OIT3|170392|oncoprotein induced transcript 3##AY358339|OIT3|170392|oncoprotein induced transcript 3##AY013707|OIT3|170392|oncoprotein induced transcript 3##M24486|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##M24487|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK312593|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK222960|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##BC034998|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_000917|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001017962|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142595|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142596|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_015901|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC031224|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK303235|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK300980|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK309755|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK316538|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC046173|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC038833|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13	1.289691	0.0	
chr15	55572228	55572408	reg1003172.p2	8.520	+	BC132800 BC136423 BC107680 NM_183236	-9220	-	AF125393 NM_183234 U57094 U38654 NM_004580	-9781	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	-83139	-	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	9673	-	NM_004855 AK293666 AK314706 BC017711	38845	+	TSC_hg19_v1_chr15_-_55611322 AB593170	39022	-	BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004855|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK293666|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK314706|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##BC017711|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B	0.895499	0.0	denovo_WM_7:-33:0.822
chr10	84674453	84674583	reg1003503.p2	8.517	+	DQ857894 NM_001165973	-1037076	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	-1039436	+	AK123978 NM_001145719	-2373944	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	1224739	+	BC033760 BC051760 TSC_hg19_v1_chr10_-_85931861	1257274	-	NM_207373 TSC_hg19_v1_chr10_+_85933558 AY358751	1259041	+	DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein##BC033760|LOC642934|642934|uncharacterized LOC642934##BC051760|LOC642934|642934|uncharacterized LOC642934##NM_207373|C10orf99|387695|chromosome 10 open reading frame 99##AY358751|C10orf99|387695|chromosome 10 open reading frame 99	0.992599	0.0	denovo_WM_7:-5:0.876
chr14	35754528	35754661	reg1002713.p1	8.517	+	TSC_hg19_v1_chr14_+_35591757 AK301931 BC050339 BC044580 BC001542 AK304066 BC032221 NM_014672 AB002389 BX161394 BX161487 AK303508	-162742	+	AK293717 BX248043 TSC_hg19_v1_chr14_-_35591728	-162904	-	AK000651 AK225512 AK225447 TSC_hg19_v1_chr14_-_35591505 BC063438 BC100021 AY157304 AY157305 NM_017917	-163116	-	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	6977	+	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	7049	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	119330	-	AK301931|KIAA0391|9692|KIAA0391##BC044580|KIAA0391|9692|KIAA0391##BC001542|KIAA0391|9692|KIAA0391##AK304066|KIAA0391|9692|KIAA0391##BC032221|KIAA0391|9692|KIAA0391##NM_014672|KIAA0391|9692|KIAA0391##AB002389|KIAA0391|9692|KIAA0391##BX161394|KIAA0391|9692|KIAA0391##BX161487|KIAA0391|9692|KIAA0391##AK303508|KIAA0391|9692|KIAA0391##AK293717|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BX248043|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK000651|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK225512|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK225447|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC063438|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC100021|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY157304|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY157305|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##NM_017917|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	0.983536	0.0	denovo_WM_7:-29:0.420
chr2	33713939	33714087	reg1003119.p1	8.516	+	TSC_hg19_v1_chr2_+_33701715 BX647990	-12317	+	NM_001139488	-12693	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	-52565	+	AB020653 NM_015376	24928	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	110332	-	TSC_hg19_v1_chr2_+_36582920 AY358371	2868949	+	BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)	0.960819	0.0	denovo_WM_7:15:0.671	denovo_WM_7:16:0.289
chr3	98292378	98292496	reg1003614.p2	8.516	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-41628	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-50571	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-50672	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	19982	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	158808	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	159150	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.953075	0.308895	denovo_WM_7:-9:0.669	CTCF.p2:33:0.309
chr5	107008171	107008322	reg1002093.p2	8.514	+	AK308672 NM_001962 U26403	-1656	-	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4109765	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4413789	+	TSC_hg19_v1_chr5_-_107717106 AK126722	708884	-	BC063316 NM_001163315	709552	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	1055734	-	AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AB593118|HP07349|100652853|uncharacterized protein HP07349	0.983302	0.0	
chr13	80973498	80973676	reg1003229.p1	8.513	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-58523	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-60545	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-918032	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3482838	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3482913	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5399852	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	1.164092	0.0	
chr13	30069495	30069624	reg1002706.p2	8.512	+	BC032481 NM_015233 AK293970 BC119654 BC119655 BC129985	-66749	+	BC150245 AB018317 NM_001033602 AB384524	-470784	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	-776504	-	AK301633 TSC_hg19_v1_chr13_+_30070532	948	+	X59155 X57303 TSC_hg19_v1_chr13_-_30169595 AK312818 BC063303	100062	-	TSC_hg19_v1_chr13_-_30169826 NM_003045	100261	-	BC032481|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_015233|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK293970|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119654|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119655|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC129985|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC150245|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AB018317|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_001033602|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3##AK301633|MTUS2|23281|microtubule associated tumor suppressor candidate 2##X59155|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##X57303|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##AK312818|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##BC063303|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##NM_003045|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	1.191374	0.0	
chr9	117975206	117975346	reg1003368.p1	8.512	+	AB022761 NM_017418	-71180	+	AB210038 TSC_hg19_v1_chr9_-_117880433 AK304015 X78565 NM_002160	-94803	-	AK313619 NM_001244 NM_001252290	-282402	-	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	940794	+	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	1474186	-	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	1474330	+	AB022761|DEC1|50514|deleted in esophageal cancer 1##NM_017418|DEC1|50514|deleted in esophageal cancer 1##AB210038|TNC|3371|tenascin C##AK304015|TNC|3371|tenascin C##X78565|TNC|3371|tenascin C##NM_002160|TNC|3371|tenascin C##AK313619|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_001244|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_001252290|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32	0.0	0.0	
chr16	46808665	46808833	reg1003450.p1	8.511	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-26587	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-85152	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-85184	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	56339	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	109532	+	NM_001142466 AK094971	110353	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.987608	0.0	denovo_WM_7:-26:0.863
chr7	129015177	129015357	reg1003579.p2	8.511	+	TSC_hg19_v1_chr7_+_129008062 AK025372	-7179	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	-7281	+	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	-150438	+	AK316073 NM_001130722	216	+	TSC_hg19_v1_chr7_+_129074283 NM_001134336 NM_020704 AK290165 BC019064 AB032996 CU676366 AB463039 AM392619 AM392944 AM392960 AM393447	59006	+	BC050400 NM_001195243 BC035417	127097	+	AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##AK316073|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130722|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001134336|FAM40B|57464|family with sequence similarity 40, member B##NM_020704|FAM40B|57464|family with sequence similarity 40, member B##AK290165|FAM40B|57464|family with sequence similarity 40, member B##BC019064|FAM40B|57464|family with sequence similarity 40, member B##AB032996|FAM40B|57464|family with sequence similarity 40, member B##AM392619|FAM40B|57464|family with sequence similarity 40, member B##AM392944|FAM40B|57464|family with sequence similarity 40, member B##AM392960|FAM40B|57464|family with sequence similarity 40, member B##AM393447|FAM40B|57464|family with sequence similarity 40, member B##BC050400|LOC100287482|100287482|uncharacterized LOC100287482##NM_001195243|LOC100287482|100287482|uncharacterized LOC100287482##BC035417|LOC100287482|100287482|uncharacterized LOC100287482	0.045851	0.0	
chr2	132272201	132272332	reg1003663.p1	8.510	+	AK304811 TSC_hg19_v1_chr2_+_132250648 AK293811 AK300337 AK303293 AK308371 BC093080	-21681	+	TSC_hg19_v1_chr2_-_132250072 NM_001085365	-22205	-	BC063024 TSC_hg19_v1_chr2_-_132249961 BC018206	-22310	-	BC063387 AB299086 AB299087 BC016861 NM_138770 CU677751 CU687684	13240	+	AF038169 NM_013310	207797	+	BC043584 NM_214461	286967	-	AK304811|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK293811|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK300337|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK303293|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK308371|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##BC093080|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##NM_001085365|MZT2A|653784|mitotic spindle organizing protein 2A##BC063024|MZT2A|653784|mitotic spindle organizing protein 2A##BC018206|MZT2A|653784|mitotic spindle organizing protein 2A##BC063387|CCDC74A|90557|coiled-coil domain containing 74A##AB299086|CCDC74A|90557|coiled-coil domain containing 74A##AB299087|CCDC74A|90557|coiled-coil domain containing 74A##BC016861|CCDC74A|90557|coiled-coil domain containing 74A##NM_138770|CCDC74A|90557|coiled-coil domain containing 74A##AF038169|C2orf27A|29798|chromosome 2 open reading frame 27A##NM_013310|C2orf27A|29798|chromosome 2 open reading frame 27A##BC043584|C2orf27B|408029|chromosome 2 open reading frame 27B##NM_214461|C2orf27B|408029|chromosome 2 open reading frame 27B	0.99681	0.0	denovo_WM_7:-26:0.997
chr16	84542240	84542385	reg1002431.p1	8.509	+	BC023251 TSC_hg19_v1_chr16_-_84538263 AB046829 BC060844 AK291237 NM_020947 AK300132 AK310887	-4021	-	TSC_hg19_v1_chr16_+_84402143 AK300526 AY791884 BX648333 NM_014861 AK316128 CR749829	-140170	+	AF302109 NM_021197 AF169631 TSC_hg19_v1_chr16_+_84328440 AK075061 BC029159 DQ893365 DQ896682	-213824	+	AB590839 BT006968 EU832743 TSC_hg19_v1_chr16_-_84651627 BC010884	109264	-	TSC_hg19_v1_chr16_-_84651682 L54057 BC053682 BC010039 NM_021149 AK315675 BC016702 BC042970	109348	-	TSC_hg19_v1_chr16_+_84682127 BC033821 NM_024731 BC032400	139822	+	BC023251|KIAA1609|57707|KIAA1609##AB046829|KIAA1609|57707|KIAA1609##BC060844|KIAA1609|57707|KIAA1609##AK291237|KIAA1609|57707|KIAA1609##NM_020947|KIAA1609|57707|KIAA1609##AK300132|KIAA1609|57707|KIAA1609##AK310887|KIAA1609|57707|KIAA1609##AK300526|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AY791884|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##BX648333|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##NM_014861|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AK316128|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##CR749829|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AF302109|WFDC1|58189|WAP four-disulfide core domain 1##NM_021197|WFDC1|58189|WAP four-disulfide core domain 1##AF169631|WFDC1|58189|WAP four-disulfide core domain 1##AK075061|WFDC1|58189|WAP four-disulfide core domain 1##BC029159|WFDC1|58189|WAP four-disulfide core domain 1##DQ893365|WFDC1|58189|WAP four-disulfide core domain 1##DQ896682|WFDC1|58189|WAP four-disulfide core domain 1##BT006968|COTL1|23406|coactosin-like 1 (Dictyostelium)##EU832743|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010884|COTL1|23406|coactosin-like 1 (Dictyostelium)##L54057|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC053682|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010039|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_021149|COTL1|23406|coactosin-like 1 (Dictyostelium)##AK315675|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC016702|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC042970|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC033821|KLHL36|79786|kelch-like 36 (Drosophila)##NM_024731|KLHL36|79786|kelch-like 36 (Drosophila)##BC032400|KLHL36|79786|kelch-like 36 (Drosophila)	0.997808	0.0	
chr8	142414249	142414367	reg1003141.p2	8.509	+	TSC_hg19_v1_chr8_+_142402120 AK311257	-12174	+	NM_005293	-36944	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	-150118	-	BC003105 NM_007079 NM_032611 TSC_hg19_v1_chr8_+_142432059 AF041434 AJ276554	17753	+	BC144560 AK125848 AK131461 NM_207414	103009	-	BC065226 TSC_hg19_v1_chr8_-_143484544 AK055726 NM_145003	1070229	-	NM_005293|GPR20|2843|G protein-coupled receptor 20##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4##BC003105|PTP4A3|11156|protein tyrosine phosphatase type IVA, member 3##NM_007079|PTP4A3|11156|protein tyrosine phosphatase type IVA, member 3##NM_032611|PTP4A3|11156|protein tyrosine phosphatase type IVA, member 3##AF041434|PTP4A3|11156|protein tyrosine phosphatase type IVA, member 3##AJ276554|PTP4A3|11156|protein tyrosine phosphatase type IVA, member 3##BC144560|FLJ43860|389690|FLJ43860 protein##AK125848|FLJ43860|389690|FLJ43860 protein##AK131461|FLJ43860|389690|FLJ43860 protein##NM_207414|FLJ43860|389690|FLJ43860 protein##BC065226|TSNARE1|203062|t-SNARE domain containing 1##AK055726|TSNARE1|203062|t-SNARE domain containing 1##NM_145003|TSNARE1|203062|t-SNARE domain containing 1	0.0	0.0	
chr1	46787068	46787225	reg1003237.p1	8.508	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-17759	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-18098	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-18129	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	19297	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	72830	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	185526	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.997089	0.0	denovo_WM_7:-4:0.911
chrX	130962122	130962239	reg1003605.p1	8.508	+	BC137050 AB529233 NM_001004486	-284182	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-538768	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-538918	-	TSC_hg19_v1_chrX_-_130964633 AK097911	2471	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	195141	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	195460	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.2051	CTCF.p2:-79:0.205
chr8	116287138	116287301	reg1003672.p2	8.507	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-1838090	-	AB114605 NM_198124	-1897838	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-5300253	-	TSC_hg19_v1_chr8_-_116680208 AK304046	393001	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	393946	-	TSC_hg19_v1_chr8_-_116681365 AF183810	394116	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	1.414582	0.0	denovo_WM_7:-1:0.456	denovo_WM_7:13:0.391
chr1	220259594	220259774	reg1003510.p1	8.506	+	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-39748	-	TSC_hg19_v1_chr1_-_220219873 AK296755 BC067841	-39821	-	TSC_hg19_v1_chr1_-_220219848 BC058921 CR933648	-39842	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	3437	-	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	3490	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	7768	+	BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AK296755|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC067841|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC058921|EPRS|2058|glutamyl-prolyl-tRNA synthetase##CR933648|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial	1.410431	0.648084	CTCF.p2:20:0.648	denovo_WM_7:-60:0.900	denovo_WM_7:105:0.287
chr12	56061087	56061220	reg1002453.p1	8.506	+	BC136914 AB529283 NM_206899	-30494	+	BC137000 BC137001 NM_001005494	-116157	+	NM_001005519	-174992	+	AK290112 NM_152637 TSC_hg19_v1_chr12_+_56075356	14190	+	BC020509 TSC_hg19_v1_chr12_+_56075425 AY358508	14286	+	AF052050 AF072132 AY358882 TSC_hg19_v1_chr12_-_56101636 AF032108 AB210036	40407	-	BC136914|OR10P1|121130|olfactory receptor, family 10, subfamily P, member 1##NM_206899|OR10P1|121130|olfactory receptor, family 10, subfamily P, member 1##BC137000|OR6C4|341418|olfactory receptor, family 6, subfamily C, member 4##BC137001|OR6C4|341418|olfactory receptor, family 6, subfamily C, member 4##NM_001005494|OR6C4|341418|olfactory receptor, family 6, subfamily C, member 4##NM_001005519|OR6C68|403284|olfactory receptor, family 6, subfamily C, member 68##AK290112|METTL7B|196410|methyltransferase like 7B##NM_152637|METTL7B|196410|methyltransferase like 7B##BC020509|METTL7B|196410|methyltransferase like 7B##AY358508|METTL7B|196410|methyltransferase like 7B##AF052050|ITGA7|3679|integrin, alpha 7##AF072132|ITGA7|3679|integrin, alpha 7##AY358882|ITGA7|3679|integrin, alpha 7##AF032108|ITGA7|3679|integrin, alpha 7##AB210036|ITGA7|3679|integrin, alpha 7	1.945485	0.0	denovo_WM_7:-45:0.889	denovo_WM_7:-60:0.899
chr9	82221064	82221228	reg1001514.p2	8.505	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-33461	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-33622	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-34260	+	BC010100 NM_005077	2082449	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2083281	-	NM_001145197 AK125847 AK308327	2322225	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	2.509115	0.0	denovo_WM_7:107:0.527
chr18	3281526	3281659	reg1003664.p1	8.504	+	NM_001144944 NM_001144945	-18929	+	TSC_hg19_v1_chr18_+_3262184 BC004994	-19395	+	NM_033546 AY320408 TSC_hg19_v1_chr18_+_3262134 AK291726 U26162 D50372 D82058	-19447	+	NM_174886	130479	+	NM_173207 AK291112	166025	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	168488	+	NM_001144944|MYL12B|103910|myosin, light chain 12B, regulatory##NM_001144945|MYL12B|103910|myosin, light chain 12B, regulatory##BC004994|MYL12B|103910|myosin, light chain 12B, regulatory##NM_033546|MYL12B|103910|myosin, light chain 12B, regulatory##AY320408|MYL12B|103910|myosin, light chain 12B, regulatory##AK291726|MYL12B|103910|myosin, light chain 12B, regulatory##U26162|MYL12B|103910|myosin, light chain 12B, regulatory##D50372|MYL12B|103910|myosin, light chain 12B, regulatory##D82058|MYL12B|103910|myosin, light chain 12B, regulatory##NM_174886|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173207|TGIF1|7050|TGFB-induced factor homeobox 1##AK291112|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1	0.0	0.927746	CTCF.p2:22:0.928
chr1	8537494	8537655	reg1002925.p2	8.504	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-53557	-	NM_001080397	-153185	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-451176	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	340018	-	GU170215 NM_001201483	394060	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	401133	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.056974	0.0	
chr5	127242677	127242819	reg1003699.p1	8.504	+	NM_001127385 AB219832 BC071790	-254023	+	NM_001048252 AB219764	-258025	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-383554	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	176015	-	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	176611	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	176725	+	NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.757204	0.0	denovo_WM_7:-26:0.201	denovo_WM_7:-28:0.472
chr2	203129574	203129728	reg1002741.p1	8.503	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	-26383	-	AB017365 NM_003507 AB010881 BC015915 CU677505	-230312	+	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	-458359	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	805	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	921	+	TSC_hg19_v1_chr2_+_203241049 NM_001204	111395	+	X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)	1.990318	0.0	denovo_WM_7:7:0.243	denovo_WM_7:8:0.209	denovo_WM_7:27:0.203	denovo_WM_7:28:0.237
chr15	85255568	85255681	reg1001792.p1	8.501	+	BC007407 BC007431 NM_021077 NM_205858	-53827	-	M21551 AL110112 BC008603 TSC_hg19_v1_chr15_-_85201431	-54178	-	TSC_hg19_v1_chr15_-_85197515 AK225068 NM_032856 BC050648 BC063392	-58098	-	AF090315 AF108945 CR457127 DQ891826 AF087906 AK300693 TSC_hg19_v1_chr15_-_85259371 AK223224 BC000359 AF061737	3722	-	TSC_hg19_v1_chr15_-_85259675 BC014508 NM_014300 AK314146	4057	-	TSC_hg19_v1_chr15_+_85291590 D86966	35958	+	BC007407|NMB|4828|neuromedin B##BC007431|NMB|4828|neuromedin B##NM_021077|NMB|4828|neuromedin B##NM_205858|NMB|4828|neuromedin B##M21551|NMB|4828|neuromedin B##AL110112|NMB|4828|neuromedin B##BC008603|NMB|4828|neuromedin B##AK225068|WDR73|84942|WD repeat domain 73##NM_032856|WDR73|84942|WD repeat domain 73##BC050648|WDR73|84942|WD repeat domain 73##BC063392|WDR73|84942|WD repeat domain 73##AF090315|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF108945|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##CR457127|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##DQ891826|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF087906|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK300693|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK223224|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC000359|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF061737|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC014508|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##NM_014300|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK314146|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##D86966|ZNF592|9640|zinc finger protein 592	1.964654	0.0	denovo_WM_7:49:0.796	denovo_WM_7:64:0.888
chr7	128762557	128762706	reg1002679.p1	8.501	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-67426	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-67483	-	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	-67736	-	BC009989 NM_005631	66081	+	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	102198	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	245355	+	AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2	1.011064	0.0	denovo_WM_7:-2:0.418	denovo_WM_7:-3:0.418
chr7	990102	990204	reg1002543.p1	8.501	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	-29639	-	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	-73883	+	TSC_hg19_v1_chr7_+_916188 NM_015949	-73950	+	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	3962	-	TSC_hg19_v1_chr7_-_994317 NM_006869	4160	-	TSC_hg19_v1_chr7_-_994377 AJ006422	4310	-	AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1##BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1	0.99638	0.0	
chr11	69006613	69006747	reg1002748.p1	8.500	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-149154	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-190254	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-190330	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	54942	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	449176	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	449230	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	1.473027	0.0	denovo_WM_7:-11:0.209
chr17	30548340	30548463	reg1002541.p2	8.499	+	TSC_hg19_v1_chr17_+_30469588 BC092401 BC068463 AY094972 BC125104 BC125105 AL136929 BC029029 AK294407 AB527368 AM393207 BC146694 AJ517412	-78762	+	TSC_hg19_v1_chr17_+_30469544 BC110895	-78856	+	TSC_hg19_v1_chr17_+_30469520 BC041114	-78879	+	AJ313480 BC100975 BC100976 BC100978 NM_138328 BC100977	44793	+	TSC_hg19_v1_chr17_-_30669193 AF052093 CU691078 BC054035 BC047325 BC026017 BC035715 AF305686 NM_022344	120806	-	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	128755	+	BC092401|RHOT1|55288|ras homolog gene family, member T1##BC068463|RHOT1|55288|ras homolog gene family, member T1##AY094972|RHOT1|55288|ras homolog gene family, member T1##BC125104|RHOT1|55288|ras homolog gene family, member T1##BC125105|RHOT1|55288|ras homolog gene family, member T1##AL136929|RHOT1|55288|ras homolog gene family, member T1##BC029029|RHOT1|55288|ras homolog gene family, member T1##AK294407|RHOT1|55288|ras homolog gene family, member T1##AM393207|RHOT1|55288|ras homolog gene family, member T1##BC146694|RHOT1|55288|ras homolog gene family, member T1##AJ517412|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1##BC041114|RHOT1|55288|ras homolog gene family, member T1##AJ313480|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100975|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100976|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100978|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##NM_138328|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100977|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##AF052093|C17orf75|64149|chromosome 17 open reading frame 75##BC054035|C17orf75|64149|chromosome 17 open reading frame 75##BC047325|C17orf75|64149|chromosome 17 open reading frame 75##BC026017|C17orf75|64149|chromosome 17 open reading frame 75##BC035715|C17orf75|64149|chromosome 17 open reading frame 75##AF305686|C17orf75|64149|chromosome 17 open reading frame 75##NM_022344|C17orf75|64149|chromosome 17 open reading frame 75##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207	0.994719	0.0	denovo_WM_7:-1:0.308	denovo_WM_7:-2:0.308	denovo_WM_7:-3:0.311
chr17	55527998	55528157	reg1003604.p1	8.499	+	AK093888 AX748353 NM_170721	-193704	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-194104	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-364934	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	399327	-	AK000746 NM_017949	452672	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	504599	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	1.296381	0.71668	denovo_WM_7:-25:0.239	CTCF.p2:34:0.717	denovo_WM_7:-40:0.237
chr2	208008078	208008258	reg1003575.p1	8.499	+	BC112076 BC112078 NM_173077 AJ422118	-203868	+	AK021557 TSC_hg19_v1_chr2_+_207630326 AK001516 AF223470 AL833877	-377845	+	NM_001136193 NM_001136194 NM_014929	-378057	+	AB015132 NM_003709 TSC_hg19_v1_chr2_-_208030685 AK314439	22488	-	BC012919 TSC_hg19_v1_chr2_-_208031680	23457	-	NM_004379 NM_134442 TSC_hg19_v1_chr2_+_208394671 BC095407	386475	+	BC112076|CPO|130749|carboxypeptidase O##BC112078|CPO|130749|carboxypeptidase O##NM_173077|CPO|130749|carboxypeptidase O##AJ422118|CPO|130749|carboxypeptidase O##AK021557|FASTKD2|22868|FAST kinase domains 2##AK001516|FASTKD2|22868|FAST kinase domains 2##AF223470|FASTKD2|22868|FAST kinase domains 2##AL833877|FASTKD2|22868|FAST kinase domains 2##NM_001136193|FASTKD2|22868|FAST kinase domains 2##NM_001136194|FASTKD2|22868|FAST kinase domains 2##NM_014929|FASTKD2|22868|FAST kinase domains 2##AB015132|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_003709|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AK314439|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##BC012919|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_004379|CREB1|1385|cAMP responsive element binding protein 1##NM_134442|CREB1|1385|cAMP responsive element binding protein 1##BC095407|CREB1|1385|cAMP responsive element binding protein 1	1.175504	0.027289	denovo_WM_7:-15:0.983
chr16	21528652	21528791	reg1000638.p1	8.498	+	BC036263 NM_130464	-92064	-	BX648477 NM_001014444 NM_001888	-214334	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-239073	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	3031	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	82169	+	AF151839 TSC_hg19_v1_chr16_+_21611174	82433	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	0.926817	0.0	denovo_WM_7:20:0.533	denovo_WM_7:21:0.227
chr7	74074243	74074423	reg1002305.p3	8.497	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-2211	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-2289	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-2312	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	114019	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	193506	-	TSC_hg19_v1_chr7_-_74306679 BC002581	232342	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.0	0.0	
chr14	72983738	72983873	reg1003217.p1	8.496	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-583939	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-584652	+	AK294895 NM_001204423	-584989	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	377003	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	409330	+	AK098542 AF311602 NM_178441	469852	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.997944	0.0	denovo_WM_7:45:0.418	denovo_WM_7:46:0.418
chr12	26944246	26944398	reg1003902.p1	8.495	+	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-595737	+	NM_001135823 AK092925 TSC_hg19_v1_chr12_+_26348312	-596031	+	TSC_hg19_v1_chr12_-_26277832 AY665467 AK303677 AB044088 BC025968 NM_030762	-666401	-	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	41758	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	146587	-	TSC_hg19_v1_chr12_-_27091213 NM_018164	146908	-	AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_001135823|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK092925|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AY665467|BHLHE41|79365|basic helix-loop-helix family, member e41##AK303677|BHLHE41|79365|basic helix-loop-helix family, member e41##AB044088|BHLHE41|79365|basic helix-loop-helix family, member e41##BC025968|BHLHE41|79365|basic helix-loop-helix family, member e41##NM_030762|BHLHE41|79365|basic helix-loop-helix family, member e41##AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)	0.990759	0.0	denovo_WM_7:-7:0.569
chr1	161187104	161187284	reg1002411.p1	8.492	+	TSC_hg19_v1_chr1_+_161185087 M33195 NM_004106 BC033872 AB590329 DQ890782 EU176502	-2097	+	AK307102 TSC_hg19_v1_chr1_+_161185076	-2123	+	BC001456 TSC_hg19_v1_chr1_+_161172183 DQ894087	-15015	+	BT006786 AB590164 DQ892493 DQ895705 AB106565 M29882 X00955 TSC_hg19_v1_chr1_-_161193333	6069	-	TSC_hg19_v1_chr1_-_161193419 AK312034 BC005282 NM_001643	6204	-	NM_032174 TSC_hg19_v1_chr1_+_161195849 AK022832 AK027704 AK297848 BX537951 AK297831	8663	+	M33195|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##NM_004106|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##BC033872|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##DQ890782|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##EU176502|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##AK307102|FCER1G|2207|Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide##BC001456|NDUFS2|4720|NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)##DQ894087|NDUFS2|4720|NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)##BT006786|APOA2|336|apolipoprotein A-II##DQ892493|APOA2|336|apolipoprotein A-II##DQ895705|APOA2|336|apolipoprotein A-II##AB106565|APOA2|336|apolipoprotein A-II##M29882|APOA2|336|apolipoprotein A-II##X00955|APOA2|336|apolipoprotein A-II##AK312034|APOA2|336|apolipoprotein A-II##BC005282|APOA2|336|apolipoprotein A-II##NM_001643|APOA2|336|apolipoprotein A-II##NM_032174|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK022832|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK027704|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297848|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BX537951|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297831|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like	0.999899	0.0	
chr12	111114965	111115100	reg1003557.p1	8.492	+	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-63107	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-93906	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-93962	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	11926	-	AK293543 NM_001040107	12567	-	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	65514	-	AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	0.983872	0.0	denovo_WM_7:-14:0.973
chr3	17193197	17193377	reg1002725.p2	8.492	+	BC036392 NM_015184	-218706	+	AB029015 NM_001144382	-266836	+	U65918 U66726 U66078 BC027595 NM_001351	-546321	-	AK310539 NM_001134381	548224	-	D86965 NM_014744	589111	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	590880	-	BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5	0.0	0.0	
chr3	183198240	183198374	reg1003380.p1	8.492	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-32877	+	NM_015078 BC064632 AK124500 AK310962	-52368	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-226701	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	75145	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	155093	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	217315	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	0.99834	0.027395	denovo_WM_7:-53:0.457	denovo_WM_7:-54:0.457
chr8	101553107	101553241	reg1003325.p1	8.492	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-230889	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-230993	-	AB271913 AB271914 AB029316 NM_015435	-237703	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	18766	-	AK093906 AX748361 NM_152628	108718	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	180632	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	0.0	0.986445	CTCF.p2:35:0.986
chr2	26267292	26267450	reg1002948.p2	8.489	+	AF086917 AF106681 BC000896 AB529109 AF297660 AF498945 CR457303 EU831649 EU831733 TSC_hg19_v1_chr2_+_26257540 AF091032	-9904	+	NM_016131 TSC_hg19_v1_chr2_+_26256952 AL136650 AK023223	-10517	+	TSC_hg19_v1_chr2_-_26205437 NM_002254	-61931	-	AB124552 NM_001168241	128588	+	AK090454 NM_001191033	136213	+	CU679263 DQ892776 DQ896023 FJ626228 TSC_hg19_v1_chr2_-_26467495 AK302532 AK293398 AK299258 AK313027 D16480 BC009235 GU727642 U04627	200110	-	AF086917|RAB10|10890|RAB10, member RAS oncogene family##AF106681|RAB10|10890|RAB10, member RAS oncogene family##BC000896|RAB10|10890|RAB10, member RAS oncogene family##AF297660|RAB10|10890|RAB10, member RAS oncogene family##AF498945|RAB10|10890|RAB10, member RAS oncogene family##CR457303|RAB10|10890|RAB10, member RAS oncogene family##EU831649|RAB10|10890|RAB10, member RAS oncogene family##EU831733|RAB10|10890|RAB10, member RAS oncogene family##AF091032|RAB10|10890|RAB10, member RAS oncogene family##NM_016131|RAB10|10890|RAB10, member RAS oncogene family##AL136650|RAB10|10890|RAB10, member RAS oncogene family##AK023223|RAB10|10890|RAB10, member RAS oncogene family##NM_002254|KIF3C|3797|kinesin family member 3C##AB124552|FAM59B|150946|family with sequence similarity 59, member B##NM_001168241|FAM59B|150946|family with sequence similarity 59, member B##AK090454|FAM59B|150946|family with sequence similarity 59, member B##NM_001191033|FAM59B|150946|family with sequence similarity 59, member B##DQ892776|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##DQ896023|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##FJ626228|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##AK302532|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##AK293398|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##AK299258|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##AK313027|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##D16480|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##BC009235|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##GU727642|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit##U04627|HADHA|3030|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit	0.996825	0.0	denovo_WM_7:53:0.985
chr3	48084014	48084146	reg1003913.p1	8.489	+	TSC_hg19_v1_chr3_-_48040260 CU679053 EU831606 EU831693	-43776	-	TSC_hg19_v1_chr3_-_47957477 BX649077	-126537	-	TSC_hg19_v1_chr3_-_47934000 AK054696	-150050	-	TSC_hg19_v1_chr3_-_48130339 BC019229 BC067228 BC051843 M64571 U19727 AB209377 AK307606 BC008715 BC012794 BC015149 AK297242	46257	-	TSC_hg19_v1_chr3_-_48130743 AK054577 NM_001134364 NM_002375 NM_030885	46620	-	AF277722 AY137580 EU812118 CU675643 AB590275 DQ890753 DQ892919 DQ896168 AK290554 TSC_hg19_v1_chr3_-_48229511	145348	-	EU831606|MAP4|4134|microtubule-associated protein 4##EU831693|MAP4|4134|microtubule-associated protein 4##AK054696|MAP4|4134|microtubule-associated protein 4##BC019229|MAP4|4134|microtubule-associated protein 4##BC067228|MAP4|4134|microtubule-associated protein 4##BC051843|MAP4|4134|microtubule-associated protein 4##M64571|MAP4|4134|microtubule-associated protein 4##U19727|MAP4|4134|microtubule-associated protein 4##AB209377|MAP4|4134|microtubule-associated protein 4##AK307606|MAP4|4134|microtubule-associated protein 4##BC008715|MAP4|4134|microtubule-associated protein 4##BC012794|MAP4|4134|microtubule-associated protein 4##BC015149|MAP4|4134|microtubule-associated protein 4##AK297242|MAP4|4134|microtubule-associated protein 4##AK054577|MAP4|4134|microtubule-associated protein 4##NM_001134364|MAP4|4134|microtubule-associated protein 4##NM_002375|MAP4|4134|microtubule-associated protein 4##NM_030885|MAP4|4134|microtubule-associated protein 4##AF277722|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AY137580|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##EU812118|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ890753|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ892919|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ896168|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK290554|CDC25A|993|cell division cycle 25 homolog A (S. pombe)	0.964688	0.0	denovo_WM_7:0:0.810
chr7	97849221	97849330	reg1003472.p2	8.489	+	BC113394 BC113396 NM_177455 AB464465	-7684	+	TSC_hg19_v1_chr7_+_97736173 AB029002 BC146773 NM_014916 BC131504 AB384558 AB590084 AY130988	-112939	+	TSC_hg19_v1_chr7_-_97619350 AB528806 NM_006188	-229893	-	TSC_hg19_v1_chr7_-_97881512 AK292996 BC053591 NM_015395 AK057048	32224	-	NM_001159491 NM_015379 TSC_hg19_v1_chr7_+_97910997 AB055977 BC018737 AF041430 BC062370 BC071992	61724	+	TSC_hg19_v1_chr7_+_97911041 AF106966 HQ257947	61789	+	BC113394|BHLHA15|168620|basic helix-loop-helix family, member a15##BC113396|BHLHA15|168620|basic helix-loop-helix family, member a15##NM_177455|BHLHA15|168620|basic helix-loop-helix family, member a15##AB029002|LMTK2|22853|lemur tyrosine kinase 2##BC146773|LMTK2|22853|lemur tyrosine kinase 2##NM_014916|LMTK2|22853|lemur tyrosine kinase 2##BC131504|LMTK2|22853|lemur tyrosine kinase 2##AY130988|LMTK2|22853|lemur tyrosine kinase 2##NM_006188|OCM2|4951|oncomodulin 2##AK292996|TECPR1|25851|tectonin beta-propeller repeat containing 1##BC053591|TECPR1|25851|tectonin beta-propeller repeat containing 1##NM_015395|TECPR1|25851|tectonin beta-propeller repeat containing 1##AK057048|TECPR1|25851|tectonin beta-propeller repeat containing 1##NM_001159491|BRI3|25798|brain protein I3##NM_015379|BRI3|25798|brain protein I3##AB055977|BRI3|25798|brain protein I3##BC018737|BRI3|25798|brain protein I3##AF041430|BRI3|25798|brain protein I3##BC062370|BRI3|25798|brain protein I3##AF106966|BRI3|25798|brain protein I3##HQ257947|BRI3|25798|brain protein I3	0.952359	0.0	denovo_WM_7:-50:0.952
chr2	209260105	209260210	reg1003227.p1	8.488	+	AK294181 TSC_hg19_v1_chr2_+_209224677	-35532	+	TSC_hg19_v1_chr2_+_209131083 AK127769	-129074	+	TSC_hg19_v1_chr2_+_209131009 AY457063 BC017736 BC032389 NM_001178000 NM_015040 NM_152671 BC125052 BC125053	-129161	+	BC036811 NM_005048 U25128 HQ257935 AY497546	11504	+	TSC_hg19_v1_chr2_+_210288770 NM_001039538 BC038857 BC066648	1028597	+	BC110423 TSC_hg19_v1_chr2_+_210444185	1184013	+	AK294181|PTH2R|5746|parathyroid hormone 2 receptor##AK127769|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##AY457063|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##BC017736|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##BC032389|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##NM_001178000|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##NM_015040|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##NM_152671|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##BC125052|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##BC125053|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##BC036811|PTH2R|5746|parathyroid hormone 2 receptor##NM_005048|PTH2R|5746|parathyroid hormone 2 receptor##U25128|PTH2R|5746|parathyroid hormone 2 receptor##HQ257935|PTH2R|5746|parathyroid hormone 2 receptor##AY497546|PTH2R|5746|parathyroid hormone 2 receptor##NM_001039538|MAP2|4133|microtubule-associated protein 2##BC038857|MAP2|4133|microtubule-associated protein 2##BC066648|MAP2|4133|microtubule-associated protein 2##BC110423|MAP2|4133|microtubule-associated protein 2	0.0	0.936436	CTCF.p2:1:0.936
chr11	82578685	82578791	reg1003224.p1	8.487	+	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	-133840	-	NM_001098816 TSC_hg19_v1_chr11_-_79151755	-3427014	-	TSC_hg19_v1_chr11_-_78285888 AK315425 NM_001243251 NM_024678	-4292843	-	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	32779	-	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	34036	+	AK312323 TSC_hg19_v1_chr11_-_82782872	204135	-	BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##NM_001098816|ODZ4|26011|odz, odd Oz/ten-m homolog 4 (Drosophila)##AK315425|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_001243251|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_024678|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82##AK312323|RAB30|27314|RAB30, member RAS oncogene family	0.507313	0.9851	CTCF.p2:-20:0.985
chr11	35187583	35187742	reg1002732.p2	8.485	+	AF098641 TSC_hg19_v1_chr11_+_35160882 EF581837 AB384769 CU678692 AK290424 FJ216964 M25078	-26802	+	TSC_hg19_v1_chr11_+_35160821 M59040	-26844	+	TSC_hg19_v1_chr11_+_35160717 AK297776 D28447 X66733 X55150 BC004372 BC052287 AY101193 BC067348 AY101192 M24915 X56794 U40373 S66400	-26928	+	TSC_hg19_v1_chr11_+_35198199 AK129808	10550	+	CR627009 TSC_hg19_v1_chr11_-_35278776 CR626999	91163	-	AB527302 AB209444 U03505 D85884 Z32517 AK298769 BC132768 AY066021 TSC_hg19_v1_chr11_-_35440905	253049	-	AF098641|CD44|960|CD44 molecule (Indian blood group)##EF581837|CD44|960|CD44 molecule (Indian blood group)##AK290424|CD44|960|CD44 molecule (Indian blood group)##FJ216964|CD44|960|CD44 molecule (Indian blood group)##M25078|CD44|960|CD44 molecule (Indian blood group)##M59040|CD44|960|CD44 molecule (Indian blood group)##AK297776|CD44|960|CD44 molecule (Indian blood group)##D28447|CD44|960|CD44 molecule (Indian blood group)##X66733|CD44|960|CD44 molecule (Indian blood group)##X55150|CD44|960|CD44 molecule (Indian blood group)##BC004372|CD44|960|CD44 molecule (Indian blood group)##BC052287|CD44|960|CD44 molecule (Indian blood group)##AY101193|CD44|960|CD44 molecule (Indian blood group)##BC067348|CD44|960|CD44 molecule (Indian blood group)##AY101192|CD44|960|CD44 molecule (Indian blood group)##M24915|CD44|960|CD44 molecule (Indian blood group)##X56794|CD44|960|CD44 molecule (Indian blood group)##U40373|CD44|960|CD44 molecule (Indian blood group)##S66400|CD44|960|CD44 molecule (Indian blood group)##AK129808|CD44|960|CD44 molecule (Indian blood group)##CR627009|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##CR626999|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AB209444|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##U03505|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##D85884|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##Z32517|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AK298769|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##BC132768|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AY066021|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2	0.301073	0.0	
chr9	19232988	19233146	reg1003375.p1	8.485	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-105519	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-105590	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-130058	-	NM_017925 BC144484 BC144485	57684	+	TSC_hg19_v1_chr9_-_19378815 BC035447	145799	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	147160	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	1.076129	0.0	denovo_WM_7:-23:0.415	denovo_WM_7:-24:0.370
chr19	2475825	2475961	reg1003101.p1	8.484	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-18933	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-18957	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	-19003	-	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	345	+	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	226802	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	226849	-	NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2##NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7	0.831935	0.0	denovo_WM_7:0:0.297	denovo_WM_7:1:0.415
chr1	16694266	16694444	reg1003790.p3	8.483	+	NM_001114600 NM_015609 BC023988 TSC_hg19_v1_chr1_+_16693726 BX640985 AJ295987 AB097042 AB097043 AB097046 AK297926 AK298576 AK308787 AL050028 AK316205 BC065538 AB097044 AB097045 BC010631	-684	+	TSC_hg19_v1_chr1_-_16678969 BC063864 NM_018994 AK055598 BC043410	-15407	-	TSC_hg19_v1_chr1_-_16678922 AK310671	-15437	-	AK128106 BC022039 AK311614 AY327405 NM_198546	69547	-	NM_001145277 NM_001145278 NM_018090 TSC_hg19_v1_chr1_+_16767200	72829	+	AK223344 TSC_hg19_v1_chr1_+_16767218 AK300764 AK302227 AK023545 BC018914	72870	+	NM_001114600|C1orf144|26099|chromosome 1 open reading frame 144##NM_015609|C1orf144|26099|chromosome 1 open reading frame 144##BC023988|C1orf144|26099|chromosome 1 open reading frame 144##BX640985|C1orf144|26099|chromosome 1 open reading frame 144##AJ295987|C1orf144|26099|chromosome 1 open reading frame 144##AB097042|C1orf144|26099|chromosome 1 open reading frame 144##AB097043|C1orf144|26099|chromosome 1 open reading frame 144##AB097046|C1orf144|26099|chromosome 1 open reading frame 144##AK297926|C1orf144|26099|chromosome 1 open reading frame 144##AK298576|C1orf144|26099|chromosome 1 open reading frame 144##AK308787|C1orf144|26099|chromosome 1 open reading frame 144##AL050028|C1orf144|26099|chromosome 1 open reading frame 144##AK316205|C1orf144|26099|chromosome 1 open reading frame 144##BC065538|C1orf144|26099|chromosome 1 open reading frame 144##AB097044|C1orf144|26099|chromosome 1 open reading frame 144##AB097045|C1orf144|26099|chromosome 1 open reading frame 144##BC010631|C1orf144|26099|chromosome 1 open reading frame 144##BC063864|FBXO42|54455|F-box protein 42##NM_018994|FBXO42|54455|F-box protein 42##AK055598|FBXO42|54455|F-box protein 42##BC043410|FBXO42|54455|F-box protein 42##AK310671|FBXO42|54455|F-box protein 42##AK128106|SPATA21|374955|spermatogenesis associated 21##BC022039|SPATA21|374955|spermatogenesis associated 21##AK311614|SPATA21|374955|spermatogenesis associated 21##AY327405|SPATA21|374955|spermatogenesis associated 21##NM_198546|SPATA21|374955|spermatogenesis associated 21##NM_001145277|NECAP2|55707|NECAP endocytosis associated 2##NM_001145278|NECAP2|55707|NECAP endocytosis associated 2##NM_018090|NECAP2|55707|NECAP endocytosis associated 2##AK223344|NECAP2|55707|NECAP endocytosis associated 2##AK300764|NECAP2|55707|NECAP endocytosis associated 2##AK302227|NECAP2|55707|NECAP endocytosis associated 2##AK023545|NECAP2|55707|NECAP endocytosis associated 2##BC018914|NECAP2|55707|NECAP endocytosis associated 2	0.198531	0.0	
chr3	182506263	182506357	reg1002641.p2	8.482	+	BC013923 L07335 Z31560 AB464715 EU446654 TSC_hg19_v1_chr3_+_181430202	-1076172	+	NM_003106 TSC_hg19_v1_chr3_+_181429713 AK312595	-1076597	+	BC016393 TSC_hg19_v1_chr3_+_181417398 AL157425	-1088918	+	TSC_hg19_v1_chr3_+_182511288 BC042180 NM_014616	4977	+	AK296750 TSC_hg19_v1_chr3_+_182511291	4985	+	TSC_hg19_v1_chr3_+_182511375 AF156548	5079	+	BC013923|SOX2|6657|SRY (sex determining region Y)-box 2##L07335|SOX2|6657|SRY (sex determining region Y)-box 2##Z31560|SOX2|6657|SRY (sex determining region Y)-box 2##EU446654|SOX2|6657|SRY (sex determining region Y)-box 2##NM_003106|SOX2|6657|SRY (sex determining region Y)-box 2##BC016393|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##AL157425|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##BC042180|ATP11B|23200|ATPase, class VI, type 11B##NM_014616|ATP11B|23200|ATPase, class VI, type 11B##AK296750|ATP11B|23200|ATPase, class VI, type 11B##AF156548|ATP11B|23200|ATPase, class VI, type 11B	0.996998	0.0	denovo_WM_7:5:0.313	denovo_WM_7:6:0.313	denovo_WM_7:7:0.313
chr10	22291722	22291861	reg1003164.p2	8.481	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-468166	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-468397	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-468515	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	658	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	874	-	NM_001199938	207120	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	0.996692	0.0	denovo_WM_7:3:0.470	denovo_WM_7:4:0.527
chr9	20356492	20356600	reg1003010.p1	8.481	+	BC143889 BC069622 AF097366 AF177987 NM_001193288 NM_020344	-569595	-	AK123581 NM_001010887 TSC_hg19_v1_chr9_+_19409009 BC092487 AY312516	-947543	+	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	-976319	-	AK312914 BC030550 L13744 TSC_hg19_v1_chr9_-_20622460	265902	-	AK225957 TSC_hg19_v1_chr9_-_20622494 BC036089 NM_004529 BX649194	265950	-	AK056522 AY139834 NM_017794	301761	+	BC143889|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##BC069622|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AF097366|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AF177987|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##NM_001193288|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##NM_020344|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AK123581|ACER2|340485|alkaline ceramidase 2##NM_001010887|ACER2|340485|alkaline ceramidase 2##BC092487|ACER2|340485|alkaline ceramidase 2##AY312516|ACER2|340485|alkaline ceramidase 2##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6##AK312914|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC030550|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##L13744|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##AK225957|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC036089|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##NM_004529|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BX649194|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##AK056522|KIAA1797|54914|KIAA1797##AY139834|KIAA1797|54914|KIAA1797##NM_017794|KIAA1797|54914|KIAA1797	0.988856	0.83501	denovo_WM_7:17:0.209	denovo_WM_7:20:0.328	denovo_WM_7:23:0.230	CTCF.p2:-57:0.835
chr19	13133376	13133523	reg1003622.p1	8.479	+	TSC_hg19_v1_chr19_+_13106288 BC052801 NM_002501 AB385580 BT019732	-27047	+	AK095926 NM_152654 BC101800 BC113476 AB070695 HQ258091	-52997	+	TSC_hg19_v1_chr19_-_13068038 AF479749 NM_052850	-65404	-	TSC_hg19_v1_chr19_+_13134807 AK297261 U18759	1355	+	TSC_hg19_v1_chr19_+_13135426 BX537794 AK295290	1948	+	TSC_hg19_v1_chr19_+_13135745 L31881 BC117113 BC117115	2311	+	NM_002501|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BT019732|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK095926|DAND5|199699|DAN domain family, member 5##NM_152654|DAND5|199699|DAN domain family, member 5##BC101800|DAND5|199699|DAN domain family, member 5##BC113476|DAND5|199699|DAN domain family, member 5##AB070695|DAND5|199699|DAN domain family, member 5##HQ258091|DAND5|199699|DAN domain family, member 5##AF479749|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##NM_052850|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AK297261|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##U18759|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BX537794|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK295290|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##L31881|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC117113|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC117115|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)	0.982677	0.0	denovo_WM_7:-32:0.376	denovo_WM_7:-36:0.503
chr17	53501051	53501211	reg1002767.p1	8.476	+	CR541893 DQ892362 DQ895569 TSC_hg19_v1_chr17_-_53499293 X85750 AK312760 AK303810 BC026324 AY424289 NM_012329	-1876	-	TSC_hg19_v1_chr17_+_53344967 AK295726 AK074289	-156145	+	AK290043 TSC_hg19_v1_chr17_+_53343204	-157944	+	BC010128 AK001832 NM_018286	299018	-	AK095175 NM_001099640	308331	-	NM_021213 TSC_hg19_v1_chr17_+_53828339 AF087857 AF151638	327244	+	CR541893|MMD|23531|monocyte to macrophage differentiation-associated##DQ892362|MMD|23531|monocyte to macrophage differentiation-associated##DQ895569|MMD|23531|monocyte to macrophage differentiation-associated##X85750|MMD|23531|monocyte to macrophage differentiation-associated##AK312760|MMD|23531|monocyte to macrophage differentiation-associated##AK303810|MMD|23531|monocyte to macrophage differentiation-associated##BC026324|MMD|23531|monocyte to macrophage differentiation-associated##AY424289|MMD|23531|monocyte to macrophage differentiation-associated##NM_012329|MMD|23531|monocyte to macrophage differentiation-associated##AK295726|HLF|3131|hepatic leukemia factor##AK074289|HLF|3131|hepatic leukemia factor##AK290043|HLF|3131|hepatic leukemia factor##BC010128|TMEM100|55273|transmembrane protein 100##AK001832|TMEM100|55273|transmembrane protein 100##NM_018286|TMEM100|55273|transmembrane protein 100##AK095175|TMEM100|55273|transmembrane protein 100##NM_001099640|TMEM100|55273|transmembrane protein 100##NM_021213|PCTP|58488|phosphatidylcholine transfer protein##AF087857|PCTP|58488|phosphatidylcholine transfer protein##AF151638|PCTP|58488|phosphatidylcholine transfer protein	1.011569	0.0	denovo_WM_7:28:0.295	denovo_WM_7:29:0.295	denovo_WM_7:30:0.295
chr1	12268984	12269113	reg1003107.p2	8.474	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	-41937	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	-41987	+	D86042 BC063482 NM_152942 BC073839 BC141804	-83032	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	21059	+	TSC_hg19_v1_chr1_+_12403045 AK057675	134022	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	408535	-	AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3	0.976038	0.925568	denovo_WM_7:-37:0.976	CTCF.p2:45:0.926
chr12	102311467	102311646	reg1003406.p1	8.471	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	-40098	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	-40438	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-86970	-	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	144194	-	TSC_hg19_v1_chr12_-_102455791 BC010889	144221	-	TSC_hg19_v1_chr12_-_102455912 AK314970 AK223339 AF151874 AF155655 NM_016053	144305	-	AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##CR457171|CCDC53|51019|coiled-coil domain containing 53##BC010889|CCDC53|51019|coiled-coil domain containing 53##AK314970|CCDC53|51019|coiled-coil domain containing 53##AK223339|CCDC53|51019|coiled-coil domain containing 53##AF151874|CCDC53|51019|coiled-coil domain containing 53##AF155655|CCDC53|51019|coiled-coil domain containing 53##NM_016053|CCDC53|51019|coiled-coil domain containing 53	1.205083	0.0	denovo_WM_7:-74:0.457	denovo_WM_7:-75:0.457
chr20	44921863	44921973	reg1003584.p2	8.471	+	BC136526 NM_021248	-41590	-	TSC_hg19_v1_chr20_+_44746952 AK222896 AJ300189 AB209660 AB590222 AX781593 AY225405 BT019901 DQ891804 DQ894988	-174953	+	TSC_hg19_v1_chr20_+_44746923 NM_001250 NM_152854 BC064518 BC012419 X60592	-175002	+	TSC_hg19_v1_chr20_-_44937138 AK289584	15252	-	TSC_hg19_v1_chr20_-_44993030 AK300798 AF132949 AK222928 AK301022 BC021138 BC014191 AF455052 AK300207 AK315726 NM_015945 NM_173073 NM_173179	71117	-	AB058737 TSC_hg19_v1_chr20_-_45035232	113298	-	BC136526|CDH22|64405|cadherin 22, type 2##NM_021248|CDH22|64405|cadherin 22, type 2##AK222896|CD40|958|CD40 molecule, TNF receptor superfamily member 5##AJ300189|CD40|958|CD40 molecule, TNF receptor superfamily member 5##AB209660|CD40|958|CD40 molecule, TNF receptor superfamily member 5##AY225405|CD40|958|CD40 molecule, TNF receptor superfamily member 5##BT019901|CD40|958|CD40 molecule, TNF receptor superfamily member 5##DQ891804|CD40|958|CD40 molecule, TNF receptor superfamily member 5##DQ894988|CD40|958|CD40 molecule, TNF receptor superfamily member 5##NM_001250|CD40|958|CD40 molecule, TNF receptor superfamily member 5##NM_152854|CD40|958|CD40 molecule, TNF receptor superfamily member 5##BC064518|CD40|958|CD40 molecule, TNF receptor superfamily member 5##BC012419|CD40|958|CD40 molecule, TNF receptor superfamily member 5##AK289584|CDH22|64405|cadherin 22, type 2##AK300798|SLC35C2|51006|solute carrier family 35, member C2##AF132949|SLC35C2|51006|solute carrier family 35, member C2##AK222928|SLC35C2|51006|solute carrier family 35, member C2##AK301022|SLC35C2|51006|solute carrier family 35, member C2##BC021138|SLC35C2|51006|solute carrier family 35, member C2##BC014191|SLC35C2|51006|solute carrier family 35, member C2##AF455052|SLC35C2|51006|solute carrier family 35, member C2##AK300207|SLC35C2|51006|solute carrier family 35, member C2##AK315726|SLC35C2|51006|solute carrier family 35, member C2##NM_015945|SLC35C2|51006|solute carrier family 35, member C2##NM_173073|SLC35C2|51006|solute carrier family 35, member C2##NM_173179|SLC35C2|51006|solute carrier family 35, member C2##AB058737|ELMO2|63916|engulfment and cell motility 2	0.0	0.0	
chr2	102320052	102320179	reg1003160.p1	8.470	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-5763	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-228922	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-316126	-	TSC_hg19_v1_chr2_+_102508334 BC045694	188227	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	188417	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	288248	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.998675	0.0	
chr18	9710871	9710995	reg1002654.p1	8.469	+	TSC_hg19_v1_chr18_+_9708323 U59877 U57091 AK223505 DQ892578 DQ895794 AF498957 BT020027 BT020028 CR407659	-2570	+	TSC_hg19_v1_chr18_+_9708299 BC001148	-2631	+	AK314809 TSC_hg19_v1_chr18_+_9708269	-2663	+	NM_001098529 NM_032243 AK303045	174809	+	NM_003574 NM_194434 TSC_hg19_v1_chr18_+_9913982	203038	+	TSC_hg19_v1_chr18_+_9914012 AK315577	203074	+	U59877|RAB31|11031|RAB31, member RAS oncogene family##U57091|RAB31|11031|RAB31, member RAS oncogene family##AK223505|RAB31|11031|RAB31, member RAS oncogene family##DQ892578|RAB31|11031|RAB31, member RAS oncogene family##DQ895794|RAB31|11031|RAB31, member RAS oncogene family##AF498957|RAB31|11031|RAB31, member RAS oncogene family##BT020027|RAB31|11031|RAB31, member RAS oncogene family##BT020028|RAB31|11031|RAB31, member RAS oncogene family##CR407659|RAB31|11031|RAB31, member RAS oncogene family##BC001148|RAB31|11031|RAB31, member RAS oncogene family##AK314809|RAB31|11031|RAB31, member RAS oncogene family##NM_001098529|TXNDC2|84203|thioredoxin domain containing 2 (spermatozoa)##NM_032243|TXNDC2|84203|thioredoxin domain containing 2 (spermatozoa)##AK303045|TXNDC2|84203|thioredoxin domain containing 2 (spermatozoa)##NM_003574|VAPA|9218|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa##NM_194434|VAPA|9218|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa##AK315577|VAPA|9218|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa	1.80189	0.0	denovo_WM_7:-12:0.879	denovo_WM_7:-66:0.633
chr20	6399478	6399619	reg1003976.p1	8.468	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-295385	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-295671	-	TSC_hg19_v1_chr20_-_6103678 AK314394 BC040545 AF443278	-295874	-	BC069214 NM_001200	349196	+	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1521554	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1600752	-	AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AK314394|FERMT1|55612|fermitin family member 1##BC040545|FERMT1|55612|fermitin family member 1##AF443278|FERMT1|55612|fermitin family member 1##BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4	0.825849	0.0	denovo_WM_7:-23:0.730
chr1	173176481	173176643	reg1003290.p1	8.466	+	CR542033 D90224 X79929 NM_003326	-170	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	-1909	-	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	-156506	-	TSC_hg19_v1_chr1_-_173446300 AK127238	269746	-	TSC_hg19_v1_chr1_+_173446473 AK300680	269911	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	269965	+	CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##AK300680|PRDX6|9588|peroxiredoxin 6##BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6	0.985251	0.0	denovo_WM_7:12:0.790
chr15	66083732	66083885	reg1003689.p1	8.466	+	AF062922 NM_004727	-169539	+	BC012630 TSC_hg19_v1_chr15_+_65903706 AB014602 BC029407 AK304006	-180153	+	AL136662 TSC_hg19_v1_chr15_-_65903462 BC007991 AK296134 AK027475 AK301033 AK301742 AK310857 AK301222 AK293207 NM_001207058 NM_001207059	-180292	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	665	-	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	785	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	78039	+	AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC012630|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AB014602|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC029407|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK304006|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AL136662|C15orf44|81556|chromosome 15 open reading frame 44##BC007991|C15orf44|81556|chromosome 15 open reading frame 44##AK296134|C15orf44|81556|chromosome 15 open reading frame 44##AK027475|C15orf44|81556|chromosome 15 open reading frame 44##AK301033|C15orf44|81556|chromosome 15 open reading frame 44##AK301742|C15orf44|81556|chromosome 15 open reading frame 44##AK310857|C15orf44|81556|chromosome 15 open reading frame 44##AK301222|C15orf44|81556|chromosome 15 open reading frame 44##AK293207|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207058|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207059|C15orf44|81556|chromosome 15 open reading frame 44##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family	0.0	0.0	
chr5	135502758	135502900	reg1003517.p1	8.466	+	TSC_hg19_v1_chr5_+_135468583 AK311231 BX648328 CR749366 CR749473	-34245	+	TSC_hg19_v1_chr5_+_135468533 AK313397 AF009745 AF071106 AF071107 AF071108 NM_001001419 NM_001001420 NM_005903	-34300	+	TSC_hg19_v1_chr5_+_135364731 AB590111 DQ892178 EU176690 CU678832 BT009820	-138095	+	NM_001167576 NM_001167577 NM_020389	198334	-	TSC_hg19_v1_chr5_-_136834252 AB463280 DQ890914 DQ894065	1331412	-	TSC_hg19_v1_chr5_-_136834420 AK094489	1331598	-	AK311231|SMAD5|4090|SMAD family member 5##BX648328|SMAD5|4090|SMAD family member 5##CR749366|SMAD5|4090|SMAD family member 5##CR749473|SMAD5|4090|SMAD family member 5##AK313397|SMAD5|4090|SMAD family member 5##AF009745|SMAD5|4090|SMAD family member 5##AF071106|SMAD5|4090|SMAD family member 5##AF071107|SMAD5|4090|SMAD family member 5##AF071108|SMAD5|4090|SMAD family member 5##NM_001001419|SMAD5|4090|SMAD family member 5##NM_001001420|SMAD5|4090|SMAD family member 5##NM_005903|SMAD5|4090|SMAD family member 5##DQ892178|TGFBI|7045|transforming growth factor, beta-induced, 68kDa##EU176690|TGFBI|7045|transforming growth factor, beta-induced, 68kDa##BT009820|TGFBI|7045|transforming growth factor, beta-induced, 68kDa##NM_001167576|TRPC7|57113|transient receptor potential cation channel, subfamily C, member 7##NM_001167577|TRPC7|57113|transient receptor potential cation channel, subfamily C, member 7##NM_020389|TRPC7|57113|transient receptor potential cation channel, subfamily C, member 7##DQ890914|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1##DQ894065|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1##AK094489|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1	0.950039	0.0	denovo_WM_7:37:0.883
chr9	124131177	124131323	reg1004220.p1	8.466	+	BC017491 TSC_hg19_v1_chr9_+_124086860	-44378	+	TSC_hg19_v1_chr9_+_124062108 AK315494 X04412 BC026033 DQ892187 EU176693 AK307859	-69028	+	TSC_hg19_v1_chr9_+_124062082 NM_000177	-69258	+	CR542100 X60067 AB528375 DQ891058 DQ894236 CU679799 TSC_hg19_v1_chr9_-_124132480 M81635	1225	-	BC010703 TSC_hg19_v1_chr9_-_124132529 AK307999 AK304449 AK304518 AK302977 NM_004099 NM_198194	1292	-	AF378121 AF378122 AF378123 TSC_hg19_v1_chr9_-_124262101 BC045756	130839	-	BC017491|GSN|2934|gelsolin##AK315494|GSN|2934|gelsolin##X04412|GSN|2934|gelsolin##BC026033|GSN|2934|gelsolin##DQ892187|GSN|2934|gelsolin##EU176693|GSN|2934|gelsolin##AK307859|GSN|2934|gelsolin##NM_000177|GSN|2934|gelsolin##CR542100|STOM|2040|stomatin##X60067|STOM|2040|stomatin##DQ891058|STOM|2040|stomatin##DQ894236|STOM|2040|stomatin##M81635|STOM|2040|stomatin##BC010703|STOM|2040|stomatin##AK307999|STOM|2040|stomatin##AK304449|STOM|2040|stomatin##AK304518|STOM|2040|stomatin##AK302977|STOM|2040|stomatin##NM_004099|STOM|2040|stomatin##NM_198194|STOM|2040|stomatin##AF378121|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##AF378122|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##AF378123|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##BC045756|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene	0.998338	0.0	denovo_WM_7:-30:0.457	denovo_WM_7:-31:0.457
chr7	75994219	75994399	reg1003248.p2	8.462	+	BC020963 TSC_hg19_v1_chr7_-_75988335 NM_012479	-5979	-	AK295029 TSC_hg19_v1_chr7_-_75988309 AB024334 AK024230 AK293505	-6016	-	AB384983 AF142498 CR541904 CR541925 CU676788 TSC_hg19_v1_chr7_-_75988268	-6111	-	TSC_hg19_v1_chr7_+_76026838 AK292763 NM_007155 BC113949	32534	+	BC113840 AK172783 AJ312755 NM_080744	44643	-	X56777 M60504 NM_001110354	59952	+	BC020963|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##NM_012479|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK295029|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AB024334|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK024230|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK293505|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AF142498|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541904|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541925|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK292763|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_007155|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##BC113949|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##BC113840|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AK172783|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AJ312755|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##NM_080744|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##X56777|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##M60504|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_001110354|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)	2.073847	0.0	denovo_WM_7:54:0.252	denovo_WM_7:57:0.503	denovo_WM_7:73:0.333	denovo_WM_7:78:0.435
chr12	10517680	10517790	reg1002838.p1	8.461	+	NM_002262 NM_007334 AF498040 AF498041 AY327501 U30610 BC028009 AB009597 AJ000001	-57203	+	AK291506 AY227806 NM_001114396	-60689	+	AF287012 TSC_hg19_v1_chr12_+_10365506 AF087847 AK303581 AK315418 AK074195 BC028315 NM_031412 BC009309 AL136676 BX648781 BC008891	-152259	+	BC039836 AK226161 AK292059 NM_007360	24899	-	TSC_hg19_v1_chr12_-_10562143 AK292020 AK310717 AB590270 AF350018 AF350019 CU676066 DQ891978 DQ895169 BC017784 U96845 AJ001683 NM_013431	44513	-	AF461811 NM_001199805	45009	-	NM_002262|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_007334|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498040|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498041|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY327501|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##U30610|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC028009|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AB009597|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AJ000001|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AK291506|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY227806|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_001114396|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF287012|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AF087847|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK303581|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK315418|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK074195|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC028315|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_031412|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC009309|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AL136676|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BX648781|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC008891|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC039836|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK226161|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292059|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##NM_007360|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292020|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##AK310717|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##AF350018|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AF350019|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##DQ891978|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##DQ895169|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##BC017784|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##U96845|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AJ001683|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##NM_013431|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AF461811|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##NM_001199805|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough	0.953688	0.0	denovo_WM_7:11:0.775
chr7	77488778	77488919	reg1002644.p1	8.460	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	-19339	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	-60638	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	-60707	+	AB014605 BC150277 AK297353 AF038563 NM_012301	1594031	-	TSC_hg19_v1_chr7_+_79083303 AK311103	1594309	+	TSC_hg19_v1_chr7_+_79764166 NM_002069 BC026326 AL049933 AK292953	2275291	+	BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##AB014605|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##BC150277|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK297353|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AF038563|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##NM_012301|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK311103|MAGI2-AS3|100505881|MAGI2 antisense RNA 3 (non-protein coding)##NM_002069|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##BC026326|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AL049933|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AK292953|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	1.342856	0.0	denovo_WM_7:25:0.339	denovo_WM_7:41:0.311	denovo_WM_7:42:0.311	denovo_WM_7:43:0.311
chr12	121863400	121863580	reg1000934.p2	8.459	+	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-25526	+	AK025614 NM_001137559	-71479	-	TSC_hg19_v1_chr12_-_121790244 NM_016237	-73224	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	41584	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	154769	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	155424	-	AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##NM_016237|ANAPC5|51433|anaphase promoting complex subunit 5##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B	0.996942	0.0	denovo_WM_7:90:0.841
chr1	67631903	67632039	reg1003483.p1	8.459	+	NM_001013674	-37752	-	TSC_hg19_v1_chr1_-_67520070 AK289800 NM_015139	-111918	-	AB385301 BC093786 BC112031 AB044343 TSC_hg19_v1_chr1_-_67519828 D87449	-112195	-	AF461422 NM_144701	197	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	141110	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	141592	+	NM_001013674|C1orf141|400757|chromosome 1 open reading frame 141##AK289800|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##NM_015139|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##BC093786|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##BC112031|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##AB044343|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##D87449|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2	0.0	0.0	
chr3	12352307	12352435	reg1004342.p1	8.458	+	AB097931 AB107271 AB472042 NM_138711 TSC_hg19_v1_chr3_+_12330568 BC006811 AJ563370	-21899	+	TSC_hg19_v1_chr3_+_12329422 NM_005037 NM_138712 X90563 AK290581	-22915	+	BC010553 NM_003256	-151521	-	TSC_hg19_v1_chr3_+_12392993 NM_015869 U79012 AB451337 AB451486 U63415 AJ563369	40691	+	NM_001145393 NM_001145394 AK225875 TSC_hg19_v1_chr3_+_12525957	173572	+	TSC_hg19_v1_chr3_+_12525987 AK074794 AK027821 NM_001145392 NM_001145395 NM_025265 BC004178 BC004211 BC019582 AK300449 AK295508	173640	+	AB097931|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB107271|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB472042|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_138711|PPARG|5468|peroxisome proliferator-activated receptor gamma##BC006811|PPARG|5468|peroxisome proliferator-activated receptor gamma##AJ563370|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_005037|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_138712|PPARG|5468|peroxisome proliferator-activated receptor gamma##X90563|PPARG|5468|peroxisome proliferator-activated receptor gamma##AK290581|PPARG|5468|peroxisome proliferator-activated receptor gamma##BC010553|TIMP4|7079|TIMP metallopeptidase inhibitor 4##NM_003256|TIMP4|7079|TIMP metallopeptidase inhibitor 4##NM_015869|PPARG|5468|peroxisome proliferator-activated receptor gamma##U79012|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB451337|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB451486|PPARG|5468|peroxisome proliferator-activated receptor gamma##U63415|PPARG|5468|peroxisome proliferator-activated receptor gamma##AJ563369|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_001145393|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##NM_001145394|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##AK225875|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##AK074794|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##AK027821|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##NM_001145392|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##NM_001145395|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##NM_025265|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##BC004178|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##BC004211|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##BC019582|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##AK300449|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##AK295508|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	1.9928	0.0	denovo_WM_7:-54:0.382	denovo_WM_7:-55:0.291	denovo_WM_7:-71:0.277	denovo_WM_7:-72:0.368
chr10	22629024	22629204	reg1000147.p1	8.456	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-18949	+	TSC_hg19_v1_chr10_+_22605316 NM_001204062 NM_012071 BX647275 AF201948 BC022898 AF078848 AK128789 AK313235 AK295109 AY542159	-23789	+	TSC_hg19_v1_chr10_+_22540999 AK094582	-88101	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	5342	+	TSC_hg19_v1_chr10_+_22726003 AK295718	96885	+	AK294817 TSC_hg19_v1_chr10_-_23003038	373923	-	NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##NM_001204062|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##NM_012071|COMMD3|23412|COMM domain containing 3##BX647275|COMMD3|23412|COMM domain containing 3##AF201948|COMMD3|23412|COMM domain containing 3##BC022898|COMMD3|23412|COMM domain containing 3##AF078848|COMMD3|23412|COMM domain containing 3##AK128789|COMMD3|23412|COMM domain containing 3##AK313235|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##AY542159|COMMD3|23412|COMM domain containing 3##AK094582|LOC100130992|100130992|uncharacterized LOC100130992##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	0.735623	0.0	denovo_WM_7:4:0.481
chr7	2942698	2942846	reg1004165.p1	8.456	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-58964	-	AK289723 AB075830 BC146753 NM_133463	-223614	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-271069	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	140690	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	398227	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1779066	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	1.411304	0.0	denovo_WM_7:-45:0.223	denovo_WM_7:-75:0.468
chr16	47344885	47345039	reg1003946.p1	8.453	+	TSC_hg19_v1_chr16_-_47177902 AK074937 NM_001201477 NM_018092	-167040	-	AY358718 BC108727 TSC_hg19_v1_chr16_-_47177852 BC098380	-167116	-	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	-337367	-	TSC_hg19_v1_chr16_-_47494975 BC006321 DQ893514 DQ896493 AF503339 AK027596	149903	-	TSC_hg19_v1_chr16_-_47494995 BC024162 NM_030790	150073	-	TSC_hg19_v1_chr16_-_47495158 AF212247 AK301908	150195	-	AK074937|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_001201477|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_018092|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AY358718|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC108727|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC098380|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC006321|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ893514|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ896493|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF503339|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK027596|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##BC024162|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##NM_030790|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF212247|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK301908|ITFG1|81533|integrin alpha FG-GAP repeat containing 1	0.998746	0.0	denovo_WM_7:5:0.354	denovo_WM_7:6:0.549
chr5	176586503	176586674	reg1002834.p1	8.453	+	TSC_hg19_v1_chr5_+_176562084 AF322907 AY049721 BC144629 BC150628 BC139789	-24476	+	TSC_hg19_v1_chr5_+_176561166 AF380302	-25401	+	TSC_hg19_v1_chr5_+_176560968 AF395588	-25635	+	TSC_hg19_v1_chr5_-_176730717 BC010006 AK021761 AK308155 BC021263 BC015534 NM_001031677 NM_130781	144113	-	TSC_hg19_v1_chr5_+_176730807 BC007268 BC018904 AK312170 AF151864	144207	+	TSC_hg19_v1_chr5_+_176730812 BC000007 BC008866 AF087858 BC013733 AF112203 AF111112 AF153607 BC013748 NM_013237 BC008307 AF201925 CU680664 DQ891042 DQ894221 U94779	144351	+	AF322907|NSD1|64324|nuclear receptor binding SET domain protein 1##AY049721|NSD1|64324|nuclear receptor binding SET domain protein 1##BC144629|NSD1|64324|nuclear receptor binding SET domain protein 1##BC150628|NSD1|64324|nuclear receptor binding SET domain protein 1##BC139789|NSD1|64324|nuclear receptor binding SET domain protein 1##AF380302|NSD1|64324|nuclear receptor binding SET domain protein 1##AF395588|NSD1|64324|nuclear receptor binding SET domain protein 1##BC010006|RAB24|53917|RAB24, member RAS oncogene family##AK021761|RAB24|53917|RAB24, member RAS oncogene family##AK308155|RAB24|53917|RAB24, member RAS oncogene family##BC021263|RAB24|53917|RAB24, member RAS oncogene family##BC015534|RAB24|53917|RAB24, member RAS oncogene family##NM_001031677|RAB24|53917|RAB24, member RAS oncogene family##NM_130781|RAB24|53917|RAB24, member RAS oncogene family##BC007268|PRELID1|27166|PRELI domain containing 1##BC018904|PRELID1|27166|PRELI domain containing 1##AK312170|PRELID1|27166|PRELI domain containing 1##AF151864|PRELID1|27166|PRELI domain containing 1##BC000007|PRELID1|27166|PRELI domain containing 1##BC008866|PRELID1|27166|PRELI domain containing 1##AF087858|PRELID1|27166|PRELI domain containing 1##BC013733|PRELID1|27166|PRELI domain containing 1##AF112203|PRELID1|27166|PRELI domain containing 1##AF111112|PRELID1|27166|PRELI domain containing 1##AF153607|PRELID1|27166|PRELI domain containing 1##BC013748|PRELID1|27166|PRELI domain containing 1##NM_013237|PRELID1|27166|PRELI domain containing 1##BC008307|PRELID1|27166|PRELI domain containing 1##AF201925|PRELID1|27166|PRELI domain containing 1##DQ891042|PRELID1|27166|PRELI domain containing 1##DQ894221|PRELID1|27166|PRELI domain containing 1	0.99503	0.0	
chr10	96204136	96204269	reg1003759.p1	8.452	+	TSC_hg19_v1_chr10_+_96162276 AB011180 AB449898	-41881	+	NM_015188 TSC_hg19_v1_chr10_+_96162185	-42016	+	AB077992 TSC_hg19_v1_chr10_-_96122697 BC049850 NM_022451 AK091246 AX746873 BC030999 AK292520	-81526	-	TSC_hg19_v1_chr10_+_96305574 AK314485 BX538033 BC068440 AK308331 BC105606 AF155827 NM_018063 BC111789 AB527159 AB102716 AB102717 AB102718 AB102719 AB102720 AB102721 AB102722 AB102723 AB113248 AB113249	101397	+	NM_000772 NM_001128925 M61856 BC069666 BC096257 BC096258 BC096259 BC096260 M61853 TSC_hg19_v1_chr10_+_96443551 AK223510 AK313403 CU686960	239211	+	M61854 AB463557 NM_000769	318257	+	AB011180|TBC1D12|23232|TBC1 domain family, member 12##AB449898|TBC1D12|23232|TBC1 domain family, member 12##NM_015188|TBC1D12|23232|TBC1 domain family, member 12##AB077992|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##BC049850|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##NM_022451|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK091246|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##BC030999|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK292520|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK314485|HELLS|3070|helicase, lymphoid-specific##BX538033|HELLS|3070|helicase, lymphoid-specific##BC068440|HELLS|3070|helicase, lymphoid-specific##AK308331|HELLS|3070|helicase, lymphoid-specific##BC105606|HELLS|3070|helicase, lymphoid-specific##AF155827|HELLS|3070|helicase, lymphoid-specific##NM_018063|HELLS|3070|helicase, lymphoid-specific##BC111789|HELLS|3070|helicase, lymphoid-specific##AB102716|HELLS|3070|helicase, lymphoid-specific##AB102717|HELLS|3070|helicase, lymphoid-specific##AB102718|HELLS|3070|helicase, lymphoid-specific##AB102719|HELLS|3070|helicase, lymphoid-specific##AB102720|HELLS|3070|helicase, lymphoid-specific##AB102721|HELLS|3070|helicase, lymphoid-specific##AB102722|HELLS|3070|helicase, lymphoid-specific##AB102723|HELLS|3070|helicase, lymphoid-specific##AB113248|HELLS|3070|helicase, lymphoid-specific##AB113249|HELLS|3070|helicase, lymphoid-specific##NM_000772|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##NM_001128925|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##M61856|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##BC069666|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##BC096257|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##BC096258|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##BC096259|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##BC096260|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##M61853|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##AK223510|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##AK313403|CYP2C18|1562|cytochrome P450, family 2, subfamily C, polypeptide 18##M61854|CYP2C19|1557|cytochrome P450, family 2, subfamily C, polypeptide 19##NM_000769|CYP2C19|1557|cytochrome P450, family 2, subfamily C, polypeptide 19	0.990896	0.703333	denovo_WM_7:-14:0.991	CTCF.p2:53:0.703
chr12	123205129	123205280	reg1003564.p1	8.452	+	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-3826	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-17332	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-193400	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	9801	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	32187	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	53897	+	AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62	0.028953	0.0	
chr1	40025372	40025475	reg1002532.p1	8.452	+	TSC_hg19_v1_chr1_+_39957300 AY303954 NM_181809 BC131617	-68078	+	TSC_hg19_v1_chr1_+_39922264 AK023821	-103104	+	NM_015038	-150248	+	BC029969 TSC_hg19_v1_chr1_-_40042150	16688	-	U75686 BC065540 TSC_hg19_v1_chr1_-_40042460 BC071591	17014	-	BC094755 TSC_hg19_v1_chr1_-_40042463	17053	-	AY303954|BMP8A|353500|bone morphogenetic protein 8a##NM_181809|BMP8A|353500|bone morphogenetic protein 8a##BC131617|BMP8A|353500|bone morphogenetic protein 8a##AK023821|MACF1|23499|microtubule-actin crosslinking factor 1##NM_015038|KIAA0754|643314|KIAA0754##BC029969|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##U75686|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##BC065540|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##BC071591|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##BC094755|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)	0.995035	0.0	
chr20	49130375	49130539	reg1003123.p2	8.450	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	-3452	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-3525	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-3538	+	AK056792 NM_080829	122968	-	TSC_hg19_v1_chr20_-_49308074 AK124347	177620	-	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	217612	+	BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)	0.573209	0.0	denovo_WM_7:-20:0.357
chr6	157877624	157877767	reg1004181.p1	8.450	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-75156	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-132478	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-133111	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	366594	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	366679	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	525192	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chr9	71783686	71783803	reg1002432.p1	8.450	+	AF083893 TSC_hg19_v1_chr9_+_71736397	-47333	+	NM_001170414 TSC_hg19_v1_chr9_+_71736198 AK295016	-47543	+	TSC_hg19_v1_chr9_+_71650693 BC048097 BC023633 CU690546	-133057	+	NM_001170630 NM_004817 NM_201629 BC027592 TSC_hg19_v1_chr9_+_71789110	5296	+	TSC_hg19_v1_chr9_+_71789197 AF083892 BC028426 AF489824 L27476 AB385223 AM392689 AM392712 AM392803 AM392967	5475	+	NM_001170415 AK302483 AK295034 NM_001170416	36257	+	AF083893|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170414|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295016|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC048097|FXN|2395|frataxin##BC023633|FXN|2395|frataxin##NM_001170630|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_004817|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_201629|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC027592|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF083892|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC028426|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF489824|TJP2|9414|tight junction protein 2 (zona occludens 2)##L27476|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392689|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392712|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392803|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392967|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170415|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK302483|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295034|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170416|TJP2|9414|tight junction protein 2 (zona occludens 2)	0.994346	0.0	denovo_WM_7:-18:0.437	denovo_WM_7:-19:0.437
chr15	57506131	57506253	reg1003391.p2	8.449	+	TSC_hg19_v1_chr15_+_57210977 M83233	-295192	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-295290	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	-295324	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	5475	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	162525	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	377973	+	M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12##AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1	0.012016	0.475769	CTCF.p2:10:0.476
chr3	114906084	114906263	reg1002677.p1	8.449	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-40059	-	BC090936 NM_001164343	-115933	-	AK225788 NM_001164344 NM_001164345	-428053	-	NM_001130064 NM_002045	435977	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	436246	+	AK315286 TSC_hg19_v1_chr3_-_116164338	1258158	-	BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AK315286|LSAMP|4045|limbic system-associated membrane protein	0.992045	0.0	denovo_WM_7:26:0.318	denovo_WM_7:32:0.389
chr4	147256345	147256525	reg1003246.p1	8.448	+	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	-159568	+	BC033879 TSC_hg19_v1_chr4_-_146859976	-396467	-	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	-396758	-	AM392861 BC146684 CU687734 DQ122860 DQ122861 DQ871036 EU831657 EU831663 EU831740 EU831744 CR936751 BC120970 BC120971 BC127626 BC127627 BC148252 AK291046 BC063471 AL136728 TSC_hg19_v1_chr4_-_147443093 BC023288 AY346324 BC150308 CR933647 NM_001029998 NM_032128	186561	-	TSC_hg19_v1_chr4_+_147560044 AK314982 NM_004575 U06233 BC136344 BC136345	303656	+	AK301807 BC024193 AK093145 AX747953 AK225725 AF345910 AK314066 NM_031956	610563	-	NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##AM392861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC146684|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122860|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ871036|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831657|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831663|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831740|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831744|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR936751|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120970|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120971|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127626|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127627|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC148252|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK291046|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC063471|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AL136728|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC023288|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AY346324|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC150308|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR933647|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_001029998|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_032128|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK314982|POU4F2|5458|POU class 4 homeobox 2##NM_004575|POU4F2|5458|POU class 4 homeobox 2##U06233|POU4F2|5458|POU class 4 homeobox 2##BC136344|POU4F2|5458|POU class 4 homeobox 2##BC136345|POU4F2|5458|POU class 4 homeobox 2##AK301807|TTC29|83894|tetratricopeptide repeat domain 29##BC024193|TTC29|83894|tetratricopeptide repeat domain 29##AK093145|TTC29|83894|tetratricopeptide repeat domain 29##AK225725|TTC29|83894|tetratricopeptide repeat domain 29##AF345910|TTC29|83894|tetratricopeptide repeat domain 29##AK314066|TTC29|83894|tetratricopeptide repeat domain 29##NM_031956|TTC29|83894|tetratricopeptide repeat domain 29	1.998326	0.0	denovo_WM_7:-7:0.218	denovo_WM_7:-8:0.630	denovo_WM_7:-23:0.661
chr12	53973661	53973791	reg1002910.p2	8.447	+	BC104234 BC104235 AF005271 NM_003717	-72330	-	NM_134324	-78350	+	TSC_hg19_v1_chr12_+_53895135 AK309569 U08998 AK290737 AK293728 AB464283 BT007140 DQ893549 DQ893931	-78598	+	AB463398 X57197 NM_001130059	21067	-	TSC_hg19_v1_chr12_-_54019764 BC042363 NM_001206683	46009	-	TSC_hg19_v1_chr12_-_54020167 BC136302 X52943 AK298853 AK313507 BC032433 BC140006 NM_001130060 NM_001206682 NM_006856	46427	-	BC104234|NPFF|8620|neuropeptide FF-amide peptide precursor##BC104235|NPFF|8620|neuropeptide FF-amide peptide precursor##AF005271|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_003717|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_134324|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK309569|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##U08998|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK290737|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##BT007140|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893549|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893931|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##X57197|ATF7|11016|activating transcription factor 7##NM_001130059|ATF7|11016|activating transcription factor 7##BC042363|ATF7|11016|activating transcription factor 7##NM_001206683|ATF7|11016|activating transcription factor 7##BC136302|ATF7|11016|activating transcription factor 7##X52943|ATF7|11016|activating transcription factor 7##AK298853|ATF7|11016|activating transcription factor 7##AK313507|ATF7|11016|activating transcription factor 7##BC032433|ATF7|11016|activating transcription factor 7##BC140006|ATF7|11016|activating transcription factor 7##NM_001130060|ATF7|11016|activating transcription factor 7##NM_001206682|ATF7|11016|activating transcription factor 7##NM_006856|ATF7|11016|activating transcription factor 7	0.595372	0.0	denovo_WM_7:4:0.573
chr19	45550635	45550815	reg1001917.p1	8.447	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	-8402	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-45983	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-92071	+	BC019352 NM_145288	28962	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	31788	+	TSC_hg19_v1_chr19_+_45596205 BC035704	45490	+	AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37	1.732946	0.0	
chr1	61919075	61919229	reg1003320.p2	8.446	+	TSC_hg19_v1_chr1_+_61869699 AK024964	-49429	+	TSC_hg19_v1_chr1_+_61548292 AB037860 NM_001134673 NM_005595 AK299356 BC022264 CU692518 DQ893250 DQ896579	-371094	+	TSC_hg19_v1_chr1_+_61547427 AK299579 NM_001145512	-371692	+	TSC_hg19_v1_chr1_+_61924622 AK096483	5540	+	AK311444 AK311705 TSC_hg19_v1_chr1_-_62190802 CU688668	271619	-	TSC_hg19_v1_chr1_-_62190806 BC048995 BC029486	271667	-	AK024964|NFIA|4774|nuclear factor I/A##AB037860|NFIA|4774|nuclear factor I/A##NM_001134673|NFIA|4774|nuclear factor I/A##NM_005595|NFIA|4774|nuclear factor I/A##AK299356|NFIA|4774|nuclear factor I/A##BC022264|NFIA|4774|nuclear factor I/A##DQ893250|NFIA|4774|nuclear factor I/A##DQ896579|NFIA|4774|nuclear factor I/A##AK299579|NFIA|4774|nuclear factor I/A##NM_001145512|NFIA|4774|nuclear factor I/A##AK096483|NFIA|4774|nuclear factor I/A##AK311444|TM2D1|83941|TM2 domain containing 1##AK311705|TM2D1|83941|TM2 domain containing 1##BC048995|TM2D1|83941|TM2 domain containing 1##BC029486|TM2D1|83941|TM2 domain containing 1	0.997278	0.083103	
chr10	64971617	64971726	reg1001798.p2	8.444	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	-78525	+	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	-78640	+	AK312813 NM_001136178	-392745	-	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	57244	-	TSC_hg19_v1_chr10_+_65224979 BC007866 AK314171	253313	+	AK027280 EF068222 NM_032776 TSC_hg19_v1_chr10_-_65225738	254007	-	AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C##BC007866|LOC84989|84989|uncharacterized LOC84989##AK314171|LOC84989|84989|uncharacterized LOC84989##AK027280|JMJD1C|221037|jumonji domain containing 1C##EF068222|JMJD1C|221037|jumonji domain containing 1C##NM_032776|JMJD1C|221037|jumonji domain containing 1C	1.988582	0.0	denovo_WM_7:-49:0.964
chr20	52454544	52454667	reg1003538.p1	8.444	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-243806	-	AF041259 NM_006526	-254970	-	AK302570 NM_001193421	-652784	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	232457	-	AK315220 NM_003657	232698	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	335915	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.978495	0.0	denovo_WM_7:22:0.323
chr3	50627969	50628085	reg1003046.p1	8.444	+	AF188706 NM_001171741	-19588	-	TSC_hg19_v1_chr3_+_50606919 BX537562 NM_016173 AK314023 AF172244 AK124369	-21079	+	AK124438 AK311093 TSC_hg19_v1_chr3_-_50605192 BC034766 AK313128 AK308074 AK309486 AL833938 AK130227 NM_001171740 NM_001171743 NM_016210	-22884	-	CU689192 AB528903 BC064354 TSC_hg19_v1_chr3_-_50649104	21065	-	TSC_hg19_v1_chr3_-_50649206 AF035947 D83532 BC031590 AF132297 AK313850 NM_013324 NM_145071	21190	-	NM_001243926 BC068497	21288	+	AF188706|C3orf18|51161|chromosome 3 open reading frame 18##NM_001171741|C3orf18|51161|chromosome 3 open reading frame 18##BX537562|HEMK1|51409|HemK methyltransferase family member 1##NM_016173|HEMK1|51409|HemK methyltransferase family member 1##AK314023|HEMK1|51409|HemK methyltransferase family member 1##AF172244|HEMK1|51409|HemK methyltransferase family member 1##AK124369|HEMK1|51409|HemK methyltransferase family member 1##AK124438|C3orf18|51161|chromosome 3 open reading frame 18##AK311093|C3orf18|51161|chromosome 3 open reading frame 18##BC034766|C3orf18|51161|chromosome 3 open reading frame 18##AK313128|C3orf18|51161|chromosome 3 open reading frame 18##AK308074|C3orf18|51161|chromosome 3 open reading frame 18##AK309486|C3orf18|51161|chromosome 3 open reading frame 18##AL833938|C3orf18|51161|chromosome 3 open reading frame 18##AK130227|C3orf18|51161|chromosome 3 open reading frame 18##NM_001171740|C3orf18|51161|chromosome 3 open reading frame 18##NM_001171743|C3orf18|51161|chromosome 3 open reading frame 18##NM_016210|C3orf18|51161|chromosome 3 open reading frame 18##BC064354|CISH|1154|cytokine inducible SH2-containing protein##AF035947|CISH|1154|cytokine inducible SH2-containing protein##D83532|CISH|1154|cytokine inducible SH2-containing protein##BC031590|CISH|1154|cytokine inducible SH2-containing protein##AF132297|CISH|1154|cytokine inducible SH2-containing protein##AK313850|CISH|1154|cytokine inducible SH2-containing protein##NM_013324|CISH|1154|cytokine inducible SH2-containing protein##NM_145071|CISH|1154|cytokine inducible SH2-containing protein##NM_001243926|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC068497|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3	0.965756	0.01577	denovo_WM_7:-36:0.675
chr4	74601067	74601200	reg1002485.p1	8.444	+	AY217664 BC058835 NM_177532 AY217665 CR749283 AK126346 NM_201431	-114914	-	AK290556 NM_001133 BC109020 BC109021 L35486	-253663	+	NM_001134 V01514 AK297669 TSC_hg19_v1_chr4_+_74301937 AK297674 AK314817 BC027881 DQ890942 DQ894103 CU693306	-299178	+	NM_000584 Y00787 AK131067 AK311874 M17017 M26383 BC013615 AF043337 AB590232 DQ890564 DQ893727 BT007067 CR542151 Z11686	5165	+	NM_002993 AK311981 U81234 BC013744 DQ891500 DQ894692 AB463491	101236	+	NM_002620 BC130653 BC130657 HQ258042	117910	+	AY217664|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##BC058835|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_177532|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AY217665|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##CR749283|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK126346|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_201431|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK290556|AFM|173|afamin##NM_001133|AFM|173|afamin##BC109020|AFM|173|afamin##BC109021|AFM|173|afamin##L35486|AFM|173|afamin##NM_001134|AFP|174|alpha-fetoprotein##V01514|AFP|174|alpha-fetoprotein##AK297669|AFP|174|alpha-fetoprotein##AK297674|AFP|174|alpha-fetoprotein##AK314817|AFP|174|alpha-fetoprotein##BC027881|AFP|174|alpha-fetoprotein##DQ890942|AFP|174|alpha-fetoprotein##DQ894103|AFP|174|alpha-fetoprotein##NM_000584|IL8|3576|interleukin 8##Y00787|IL8|3576|interleukin 8##AK131067|IL8|3576|interleukin 8##AK311874|IL8|3576|interleukin 8##M17017|IL8|3576|interleukin 8##M26383|IL8|3576|interleukin 8##BC013615|IL8|3576|interleukin 8##DQ890564|IL8|3576|interleukin 8##DQ893727|IL8|3576|interleukin 8##BT007067|IL8|3576|interleukin 8##CR542151|IL8|3576|interleukin 8##Z11686|IL8|3576|interleukin 8##NM_002993|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##AK311981|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##U81234|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##BC013744|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ891500|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ894692|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##NM_002620|PF4V1|5197|platelet factor 4 variant 1##BC130653|PF4V1|5197|platelet factor 4 variant 1##BC130657|PF4V1|5197|platelet factor 4 variant 1##HQ258042|PF4V1|5197|platelet factor 4 variant 1	0.277729	0.0	denovo_WM_7:-100:0.253
chr12	31889486	31889666	reg1003853.p1	8.442	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-7520	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-7602	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-76962	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	55628	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	222755	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	222818	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.980091	0.0	denovo_WM_7:40:0.928
chr17	70423416	70423570	reg1003057.p1	8.441	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-306253	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-306323	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-306334	+	AK000477 TSC_hg19_v1_chr17_-_70588944	165450	-	AF331643 TSC_hg19_v1_chr17_-_71088816	665323	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	665330	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	1.094382	0.132827	denovo_WM_7:-9:0.444	denovo_WM_7:-10:0.442
chr1	227924111	227924267	reg1003828.p2	8.440	+	CU676318 TSC_hg19_v1_chr1_+_227923140 BX648570 AK054633 BC011145 BC007786	-1057	+	TSC_hg19_v1_chr1_-_227923113 AK023030 AK022579 NM_001161465 NM_023007 AB528287	-1090	-	TSC_hg19_v1_chr1_-_227922985 BC011928	-1218	-	BC130400 HQ258179 NM_183062	79192	+	AB590917 HQ258230 AB060283 AK131041 TSC_hg19_v1_chr1_-_228135634 BC111960 BC113431 NM_003395	211442	-	NM_033131 AK056278 BC103921 BC103922 BC103923 AB060284	270584	+	BX648570|SNAP47|116841|synaptosomal-associated protein, 47kDa##AK054633|SNAP47|116841|synaptosomal-associated protein, 47kDa##BC011145|SNAP47|116841|synaptosomal-associated protein, 47kDa##BC007786|SNAP47|116841|synaptosomal-associated protein, 47kDa##AK023030|JMJD4|65094|jumonji domain containing 4##AK022579|JMJD4|65094|jumonji domain containing 4##NM_001161465|JMJD4|65094|jumonji domain containing 4##NM_023007|JMJD4|65094|jumonji domain containing 4##BC011928|JMJD4|65094|jumonji domain containing 4##BC130400|PRSS38|339501|protease, serine, 38##HQ258179|PRSS38|339501|protease, serine, 38##NM_183062|PRSS38|339501|protease, serine, 38##HQ258230|WNT9A|7483|wingless-type MMTV integration site family, member 9A##AB060283|WNT9A|7483|wingless-type MMTV integration site family, member 9A##AK131041|WNT9A|7483|wingless-type MMTV integration site family, member 9A##BC111960|WNT9A|7483|wingless-type MMTV integration site family, member 9A##BC113431|WNT9A|7483|wingless-type MMTV integration site family, member 9A##NM_003395|WNT9A|7483|wingless-type MMTV integration site family, member 9A##NM_033131|WNT3A|89780|wingless-type MMTV integration site family, member 3A##AK056278|WNT3A|89780|wingless-type MMTV integration site family, member 3A##BC103921|WNT3A|89780|wingless-type MMTV integration site family, member 3A##BC103922|WNT3A|89780|wingless-type MMTV integration site family, member 3A##BC103923|WNT3A|89780|wingless-type MMTV integration site family, member 3A##AB060284|WNT3A|89780|wingless-type MMTV integration site family, member 3A	1.994078	0.0	denovo_WM_7:22:0.284	denovo_WM_7:23:0.237	denovo_WM_7:41:0.237	denovo_WM_7:42:0.285
chr13	53382342	53382484	reg1003921.p1	8.439	+	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	-68451	-	AB006000 CR541910 TSC_hg19_v1_chr13_-_53313891	-68549	-	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	-155471	+	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	40362	-	AK000683 NM_006418 BC117329 TSC_hg19_v1_chr13_+_53602947 AY358567 HQ258281 AF097021 AK300947	220499	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	4332703	+	BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AB006000|LECT1|11061|leukocyte cell derived chemotaxin 1##CR541910|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8##AK000683|OLFM4|10562|olfactomedin 4##NM_006418|OLFM4|10562|olfactomedin 4##BC117329|OLFM4|10562|olfactomedin 4##AY358567|OLFM4|10562|olfactomedin 4##HQ258281|OLFM4|10562|olfactomedin 4##AF097021|OLFM4|10562|olfactomedin 4##AK300947|OLFM4|10562|olfactomedin 4##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A	0.990577	0.0	denovo_WM_7:-32:0.679	denovo_WM_7:-33:0.253
chr17	37025383	37025554	reg1002365.p1	8.439	+	TSC_hg19_v1_chr17_-_37009990 AB528571 DQ893218 DQ896547 BC034378 X55954 AK095288 BC010114 BC062716 X52839 AK024749 D28349 BC104651 NM_000978	-15462	-	TSC_hg19_v1_chr17_-_37009338 BC003518	-16121	-	NM_001080465	-27827	-	NM_006148 TSC_hg19_v1_chr17_+_37026113	646	+	AK307868 TSC_hg19_v1_chr17_+_37026294 AK294704	813	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	846	+	DQ893218|RPL23|9349|ribosomal protein L23##DQ896547|RPL23|9349|ribosomal protein L23##BC034378|RPL23|9349|ribosomal protein L23##X55954|RPL23|9349|ribosomal protein L23##AK095288|SNORA21|619505|small nucleolar RNA, H/ACA box 21##BC010114|RPL23|9349|ribosomal protein L23##BC062716|RPL23|9349|ribosomal protein L23##X52839|RPL23|9349|ribosomal protein L23##AK024749|RPL23|9349|ribosomal protein L23##BC104651|RPL23|9349|ribosomal protein L23##NM_000978|RPL23|9349|ribosomal protein L23##BC003518|RPL23|9349|ribosomal protein L23##NM_001080465|C17orf98|388381|chromosome 17 open reading frame 98##NM_006148|LASP1|3927|LIM and SH3 protein 1##AK307868|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1	0.998596	0.0	denovo_WM_7:-9:0.294	denovo_WM_7:-10:0.287	denovo_WM_7:-11:0.287
chr7	134595855	134596035	reg1003746.p2	8.439	+	BC014035 TSC_hg19_v1_chr7_+_134576197 BC061926 BC005006 D90452 D90453	-19672	+	NM_033139 NM_033140 TSC_hg19_v1_chr7_+_134576161	-19790	+	TSC_hg19_v1_chr7_+_134464419 BC040354	-131523	+	TSC_hg19_v1_chr7_+_134671258 AK302827 NM_178563 BC030651 AL832281 AK023045 AK311252	75340	+	NM_018295 TSC_hg19_v1_chr7_+_134832838 AK001862 AK225055 AK301268 BC020942	236902	+	NM_001243753 NM_001243755	258280	-	BC014035|CALD1|800|caldesmon 1##BC061926|CALD1|800|caldesmon 1##BC005006|CALD1|800|caldesmon 1##D90452|CALD1|800|caldesmon 1##D90453|CALD1|800|caldesmon 1##NM_033139|CALD1|800|caldesmon 1##NM_033140|CALD1|800|caldesmon 1##BC040354|CALD1|800|caldesmon 1##AK302827|AGBL3|340351|ATP/GTP binding protein-like 3##NM_178563|AGBL3|340351|ATP/GTP binding protein-like 3##BC030651|AGBL3|340351|ATP/GTP binding protein-like 3##AL832281|AGBL3|340351|ATP/GTP binding protein-like 3##AK023045|AGBL3|340351|ATP/GTP binding protein-like 3##NM_018295|TMEM140|55281|transmembrane protein 140##AK001862|TMEM140|55281|transmembrane protein 140##AK225055|TMEM140|55281|transmembrane protein 140##AK301268|TMEM140|55281|transmembrane protein 140##BC020942|TMEM140|55281|transmembrane protein 140##NM_001243753|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243755|C7orf49|78996|chromosome 7 open reading frame 49	1.037168	0.0	
chr19	8280336	8280442	reg1003221.p2	8.433	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-6141	+	AB384635 AB053450 BC153882 NM_032447	-68014	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-162442	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	92820	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	105868	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	105897	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.991635	0.0	denovo_WM_7:-14:0.246	denovo_WM_7:-17:0.388	denovo_WM_7:-18:0.251
chr5	56136587	56136755	reg1003544.p1	8.432	+	TSC_hg19_v1_chr5_+_56111395 AF042838	-25253	+	TSC_hg19_v1_chr5_+_56111375 AK307828	-25307	+	NM_005921	-25772	+	NM_001171990 NM_153706 BC036528 AK309152	68461	+	TSC_hg19_v1_chr5_-_56247951 BX537798 BX640907 CR749246 CR749805 BX647359 BX648294 BC041348 NM_152622	111273	-	TSC_hg19_v1_chr5_+_56469684 AK311625 NM_001203246 NM_022913	333043	+	AF042838|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##NM_001171990|C5orf35|133383|chromosome 5 open reading frame 35##NM_153706|C5orf35|133383|chromosome 5 open reading frame 35##BC036528|C5orf35|133383|chromosome 5 open reading frame 35##AK309152|C5orf35|133383|chromosome 5 open reading frame 35##BX537798|MIER3|166968|mesoderm induction early response 1, family member 3##BX640907|MIER3|166968|mesoderm induction early response 1, family member 3##CR749246|MIER3|166968|mesoderm induction early response 1, family member 3##CR749805|MIER3|166968|mesoderm induction early response 1, family member 3##BX647359|MIER3|166968|mesoderm induction early response 1, family member 3##BX648294|MIER3|166968|mesoderm induction early response 1, family member 3##BC041348|MIER3|166968|mesoderm induction early response 1, family member 3##NM_152622|MIER3|166968|mesoderm induction early response 1, family member 3##AK311625|GPBP1|65056|GC-rich promoter binding protein 1##NM_001203246|GPBP1|65056|GC-rich promoter binding protein 1##NM_022913|GPBP1|65056|GC-rich promoter binding protein 1	0.996944	0.0	denovo_WM_7:34:0.239	denovo_WM_7:35:0.239	denovo_WM_7:36:0.239	denovo_WM_7:37:0.239
chr10	88512941	88513102	reg1003533.p1	8.431	+	AK304760 TSC_hg19_v1_chr10_+_88428267 AK300692 AK297871 NM_001080116 AJ133766 BC010929 NM_001080114 NM_001080115 NM_001171611 NM_007078 AB014513 AF276807 AF276808 AF276809 AJ133767 AJ133768	-84666	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	-84835	+	TSC_hg19_v1_chr10_+_88426539 AK294696	-86476	+	TSC_hg19_v1_chr10_+_88516526 NM_004329 BC028383 AK291764 Z22535	3466	+	TSC_hg19_v1_chr10_-_88717330 BC072456 AK304727 AK023527 AK293822 BC094744 BC064415 AK308401 NM_024756	204350	-	NM_003087 AK223367 AK311652 BC014098 AK312141 AF017256 AF411524 EU019993 AF010126 DQ892334 DQ892505 DQ895719 EU176715 AB464279 CR541788 CR541790	205349	+	AK304760|LDB3|11155|LIM domain binding 3##AK300692|LDB3|11155|LIM domain binding 3##AK297871|LDB3|11155|LIM domain binding 3##NM_001080116|LDB3|11155|LIM domain binding 3##AJ133766|LDB3|11155|LIM domain binding 3##BC010929|LDB3|11155|LIM domain binding 3##NM_001080114|LDB3|11155|LIM domain binding 3##NM_001080115|LDB3|11155|LIM domain binding 3##NM_001171611|LDB3|11155|LIM domain binding 3##NM_007078|LDB3|11155|LIM domain binding 3##AB014513|LDB3|11155|LIM domain binding 3##AF276807|LDB3|11155|LIM domain binding 3##AF276808|LDB3|11155|LIM domain binding 3##AF276809|LDB3|11155|LIM domain binding 3##AJ133767|LDB3|11155|LIM domain binding 3##AJ133768|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3##AK294696|LDB3|11155|LIM domain binding 3##NM_004329|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC028383|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK291764|BMPR1A|657|bone morphogenetic protein receptor, type IA##Z22535|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC072456|MMRN2|79812|multimerin 2##AK304727|MMRN2|79812|multimerin 2##AK023527|MMRN2|79812|multimerin 2##AK293822|MMRN2|79812|multimerin 2##BC094744|MMRN2|79812|multimerin 2##BC064415|MMRN2|79812|multimerin 2##AK308401|MMRN2|79812|multimerin 2##NM_024756|MMRN2|79812|multimerin 2##NM_003087|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK223367|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##BC014098|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK312141|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF017256|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF411524|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU019993|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF010126|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892334|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892505|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ895719|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU176715|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541788|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541790|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)	0.992576	0.0	
chr7	143535806	143535986	reg1003255.p1	8.430	+	BC110410 BC043153 NM_178561	-81090	-	NM_001130026 AK296318	-122946	+	BC113530 BC117233 NM_173678 AY167570 BC010225	-217354	+	AK299911 TSC_hg19_v1_chr7_-_143582416 NM_001206941	46518	-	TSC_hg19_v1_chr7_-_143599249 AB018281 NM_014719 BC000609 AK291605 AK001640 NM_001206938	63369	-	BC136812 BC136813 NM_001004685	96395	+	BC110410|CTAGE6P|340307|CTAGE family, member 6, pseudogene##BC043153|CTAGE6P|340307|CTAGE family, member 6, pseudogene##NM_178561|CTAGE6P|340307|CTAGE family, member 6, pseudogene##NM_001130026|FAM115C|285966|family with sequence similarity 115, member C##AK296318|FAM115C|285966|family with sequence similarity 115, member C##BC113530|FAM115C|285966|family with sequence similarity 115, member C##BC117233|FAM115C|285966|family with sequence similarity 115, member C##NM_173678|FAM115C|285966|family with sequence similarity 115, member C##AY167570|FAM115C|285966|family with sequence similarity 115, member C##BC010225|LOC154761|154761|uncharacterized LOC154761##AK299911|FAM115A|9747|family with sequence similarity 115, member A##NM_001206941|FAM115A|9747|family with sequence similarity 115, member A##AB018281|FAM115A|9747|family with sequence similarity 115, member A##NM_014719|FAM115A|9747|family with sequence similarity 115, member A##BC000609|FAM115A|9747|family with sequence similarity 115, member A##AK291605|FAM115A|9747|family with sequence similarity 115, member A##AK001640|FAM115A|9747|family with sequence similarity 115, member A##NM_001206938|FAM115A|9747|family with sequence similarity 115, member A##BC136812|OR2F2|135948|olfactory receptor, family 2, subfamily F, member 2##BC136813|OR2F2|135948|olfactory receptor, family 2, subfamily F, member 2##NM_001004685|OR2F2|135948|olfactory receptor, family 2, subfamily F, member 2	1.919473	0.0	denovo_WM_7:0:0.368	denovo_WM_7:3:0.305
chr10	73814848	73814970	reg1003602.p2	8.425	+	TSC_hg19_v1_chr10_+_73723993 AB017915 NM_004273 AB012192	-90852	+	TSC_hg19_v1_chr10_-_73611059 NM_001042465 NM_001042466 NM_002778	-203818	-	AK299184 TSC_hg19_v1_chr10_-_73611043	-203866	-	AK292328 TSC_hg19_v1_chr10_-_73848270 AK294008 AK307091	33359	-	TSC_hg19_v1_chr10_-_73848286 AY358921	33373	-	TSC_hg19_v1_chr10_-_73848310 AJ001453	33431	-	AB017915|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_004273|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##AB012192|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_001042465|PSAP|5660|prosaposin##NM_001042466|PSAP|5660|prosaposin##NM_002778|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin##AK292328|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK294008|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK307091|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AY358921|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	0.040859	0.018778	
chr17	59104390	59104570	reg1002908.p1	8.425	+	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	-349267	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-426791	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-426936	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	372756	+	TSC_hg19_v1_chr17_+_59477477 U28049	373016	+	TSC_hg19_v1_chr17_+_59477713 AL832900 AB209378	373237	+	NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2##AL832900|TBX2|6909|T-box 2##AB209378|TBX2|6909|T-box 2	0.997235	0.0	denovo_WM_7:6:0.353
chr4	113218437	113218574	reg1003293.p2	8.425	+	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	-11504	-	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-65421	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-151891	+	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	22	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	218827	-	TSC_hg19_v1_chr4_-_113558057 BC044799 BC028584 AK002193	339541	-	BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2##BC044799|C4orf21|55345|chromosome 4 open reading frame 21##BC028584|C4orf21|55345|chromosome 4 open reading frame 21##AK002193|C4orf21|55345|chromosome 4 open reading frame 21	0.990029	0.0	denovo_WM_7:-13:0.369	denovo_WM_7:-14:0.571
chrUn_gl000219	99910	99976	reg1015347.p2	8.424	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr19	11065405	11065520	reg1002489.p1	8.423	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-26005	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-26223	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-83026	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	6184	+	TSC_hg19_v1_chr19_+_11071717 BC007302	6253	+	TSC_hg19_v1_chr19_+_11071720 BC035916	6288	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.99204	0.0	denovo_WM_7:42:0.837
chr5	83493416	83493579	reg1003159.p1	8.422	+	AK313713 NM_001884 X17405 X78076 X78075	-476563	-	NM_001126336 NM_001164097 NM_001164098 NM_004385 TSC_hg19_v1_chr5_+_82767562 U16306 U26555 X15998 AK307642 AB209491 BC050524 D32039	-725880	+	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	-1120114	+	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	186749	-	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	187167	-	TSC_hg19_v1_chr5_+_85913757 AK026505	2420261	+	AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001126336|VCAN|1462|versican##NM_001164097|VCAN|1462|versican##NM_001164098|VCAN|1462|versican##NM_004385|VCAN|1462|versican##U16306|VCAN|1462|versican##U26555|VCAN|1462|versican##X15998|VCAN|1462|versican##AK307642|VCAN|1462|versican##AB209491|VCAN|1462|versican##BC050524|VCAN|1462|versican##D32039|VCAN|1462|versican##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc	1.397176	0.0	denovo_WM_7:-11:0.296	denovo_WM_7:-15:0.347
chr2	231528015	231528190	reg1002859.p1	8.421	+	AK091898 NM_001206704	-246632	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-247146	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-247183	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	49444	+	TSC_hg19_v1_chr2_+_231577633 BC020570	49542	+	AK292382 NM_001130849 NM_001130850 AK315692	50176	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	1.991177	0.0	denovo_WM_7:28:0.248	denovo_WM_7:29:0.213	denovo_WM_7:48:0.213	denovo_WM_7:49:0.249
chr2	24605371	24605461	reg1002516.p1	8.421	+	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	-21936	-	BC050462 NM_001040710	-207445	+	TSC_hg19_v1_chr2_+_24346339 NM_001145710	-259057	+	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	201961	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	410822	-	NM_001199803 AK027859 TSC_hg19_v1_chr2_+_25016332 NM_024322 BC002870 AK315483	410855	+	AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##NM_001145710|LOC375190|375190|UPF0638 protein B##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001199803|CENPO|79172|centromere protein O##AK027859|CENPO|79172|centromere protein O##NM_024322|CENPO|79172|centromere protein O##BC002870|CENPO|79172|centromere protein O##AK315483|CENPO|79172|centromere protein O	0.0	0.211969	CTCF.p2:47:0.212
chr9	132772979	132773136	reg1003021.p2	8.421	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-175292	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-175335	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-175373	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	32297	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	32431	-	BC039728 NM_001136557 NM_001136558 NM_020960	42927	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.989377	0.0	denovo_WM_7:-6:0.820
chr14	54999335	54999515	reg1003448.p1	8.419	+	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	-22814	+	TSC_hg19_v1_chr14_-_54955728 AB001106 BX647679 NM_004124	-43670	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	-43740	-	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	34919	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	35211	+	TSC_hg19_v1_chr14_+_55168831 AB028976	169464	+	AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##AB001106|GMFB|2764|glia maturation factor, beta##BX647679|GMFB|2764|glia maturation factor, beta##NM_004124|GMFB|2764|glia maturation factor, beta##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta##NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A	0.999658	0.0	denovo_WM_7:2:0.298	denovo_WM_7:3:0.298	denovo_WM_7:4:0.298
chr16	68774045	68774225	reg1002982.p2	8.418	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-2824	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-2890	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-2916	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	103370	+	AK291400 NM_001199280	365331	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	366005	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	0.072377	0.0	
chr19	18383348	18383443	reg1003383.p1	8.418	+	NM_000923 U66346	-24386	-	AK300888 AK300983 TSC_hg19_v1_chr19_-_18337249 NM_001098818 U88713	-46136	-	NM_001098819 U88712	-48093	-	AK057466 AK302431 AL136867 BC112932 NM_001145304 NM_001145305 NM_025249	1847	-	TSC_hg19_v1_chr19_+_18391286 AB593186	7886	+	BC169275 TSC_hg19_v1_chr19_-_18391478	8064	-	NM_000923|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U66346|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300888|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300983|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_001098818|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88713|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK057466|KIAA1683|80726|KIAA1683##AK302431|KIAA1683|80726|KIAA1683##AL136867|KIAA1683|80726|KIAA1683##BC112932|KIAA1683|80726|KIAA1683##NM_001145304|KIAA1683|80726|KIAA1683##NM_001145305|KIAA1683|80726|KIAA1683##NM_025249|KIAA1683|80726|KIAA1683	0.996941	0.056313	denovo_WM_7:36:0.841
chr1	114220665	114220793	reg1003621.p1	8.417	+	BC130409 BC144144 NM_001142782 NM_152900	-287255	+	TSC_hg19_v1_chr1_+_113615865 BC117368 BC117370 AB527394	-604783	+	TSC_hg19_v1_chr1_+_113615809 AK291031 CR936669 AB018349 NM_014813 AL161998	-604914	+	TSC_hg19_v1_chr1_-_114301772 NM_006608	81042	-	TSC_hg19_v1_chr1_-_114302096 BC002447	81411	-	TSC_hg19_v1_chr1_-_114354898 CU693140 CR627402	134152	-	BC130409|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##BC144144|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_001142782|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_152900|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##BC117368|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC117370|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AK291031|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##CR936669|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AB018349|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##NM_014813|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AL161998|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##NM_006608|PHTF1|10745|putative homeodomain transcription factor 1##BC002447|PHTF1|10745|putative homeodomain transcription factor 1##CR627402|RSBN1|54665|round spermatid basic protein 1	1.033495	0.111831	denovo_WM_7:11:0.979
chr11	107730721	107730899	reg1002804.p4	8.416	+	NM_017515	-897	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	-1222	-	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	-1305	-	TSC_hg19_v1_chr11_+_107799171 AK292969 BC028064 NM_017516 X99962	68425	+	NM_003478 AK125294	148622	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	148817	+	NM_017515|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK292969|RAB39A|54734|RAB39A, member RAS oncogene family##BC028064|RAB39A|54734|RAB39A, member RAS oncogene family##NM_017516|RAB39A|54734|RAB39A, member RAS oncogene family##X99962|RAB39A|54734|RAB39A, member RAS oncogene family##NM_003478|CUL5|8065|cullin 5##AK125294|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5	0.089197	0.0	
chr17	3597108	3597237	reg1002313.p1	8.413	+	NM_001014764 NM_031298 TSC_hg19_v1_chr17_+_3572105 BC001409	-25070	+	TSC_hg19_v1_chr17_-_3571905 AF028823 NM_001204698 NM_014604	-25234	-	AB590842 CU692828 TSC_hg19_v1_chr17_-_3571873 AF277318 BC035653 U90913 AF234997 AK001327 AK315408 BC023980	-25324	-	DQ234349 CU691640 AB528606 TSC_hg19_v1_chr17_-_3599311 AF070573 AF016709 U49395 U49396	2140	-	BC006220 BC028084 TSC_hg19_v1_chr17_-_3599406 BC039015	2232	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	2420	-	NM_001014764|TMEM93|83460|transmembrane protein 93##NM_031298|TMEM93|83460|transmembrane protein 93##BC001409|TMEM93|83460|transmembrane protein 93##AF028823|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##NM_001204698|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##NM_014604|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AF277318|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##U90913|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AF234997|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AK001327|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AK315408|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##BC023980|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##DQ234349|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF070573|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF016709|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49395|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49396|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC006220|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC028084|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC039015|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5	0.981477	0.0	denovo_WM_7:-41:0.873
chr3	48126593	48126773	reg1003576.p3	8.413	+	TSC_hg19_v1_chr3_-_48040260 CU679053 EU831606 EU831693	-86379	-	TSC_hg19_v1_chr3_-_47957477 BX649077	-169140	-	TSC_hg19_v1_chr3_-_47934000 AK054696	-192653	-	TSC_hg19_v1_chr3_-_48130339 BC019229 BC067228 BC051843 M64571 U19727 AB209377 AK307606 BC008715 BC012794 BC015149 AK297242	3654	-	TSC_hg19_v1_chr3_-_48130743 AK054577 NM_001134364 NM_002375 NM_030885	4017	-	AF277722 AY137580 EU812118 CU675643 AB590275 DQ890753 DQ892919 DQ896168 AK290554 TSC_hg19_v1_chr3_-_48229511	102745	-	EU831606|MAP4|4134|microtubule-associated protein 4##EU831693|MAP4|4134|microtubule-associated protein 4##AK054696|MAP4|4134|microtubule-associated protein 4##BC019229|MAP4|4134|microtubule-associated protein 4##BC067228|MAP4|4134|microtubule-associated protein 4##BC051843|MAP4|4134|microtubule-associated protein 4##M64571|MAP4|4134|microtubule-associated protein 4##U19727|MAP4|4134|microtubule-associated protein 4##AB209377|MAP4|4134|microtubule-associated protein 4##AK307606|MAP4|4134|microtubule-associated protein 4##BC008715|MAP4|4134|microtubule-associated protein 4##BC012794|MAP4|4134|microtubule-associated protein 4##BC015149|MAP4|4134|microtubule-associated protein 4##AK297242|MAP4|4134|microtubule-associated protein 4##AK054577|MAP4|4134|microtubule-associated protein 4##NM_001134364|MAP4|4134|microtubule-associated protein 4##NM_002375|MAP4|4134|microtubule-associated protein 4##NM_030885|MAP4|4134|microtubule-associated protein 4##AF277722|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AY137580|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##EU812118|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ890753|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ892919|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ896168|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK290554|CDC25A|993|cell division cycle 25 homolog A (S. pombe)	0.999844	0.0	
chr5	55373622	55373783	reg1003456.p1	8.413	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-82939	-	NM_001242636 NM_001242639	-224553	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-226433	+	AK123389 NM_024669	155483	-	NM_005921	737197	+	TSC_hg19_v1_chr5_+_56111375 AK307828	737662	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.999559	0.0	
chr1	63249296	63249441	reg1002425.p1	8.411	+	DQ341187 TSC_hg19_v1_chr1_-_63154045 AK055401 NM_033407 AK292640	-95241	-	NM_014495 AK315304 TSC_hg19_v1_chr1_+_63063190 AK289426 BC007059 BC058287 AY358273 AF152562 AB590604 CU691298	-186157	+	TSC_hg19_v1_chr1_+_62902747 BC032364 AB208893 AF117386 AB014458	-346481	+	TSC_hg19_v1_chr1_+_63249807 NM_032852 NM_178221 AK027773 BC018678 BC033024 BC008395	445	+	AB464527 NM_012183	539361	+	TSC_hg19_v1_chr1_+_63789065 L12142	539716	+	DQ341187|DOCK7|85440|dedicator of cytokinesis 7##AK055401|DOCK7|85440|dedicator of cytokinesis 7##NM_033407|DOCK7|85440|dedicator of cytokinesis 7##AK292640|DOCK7|85440|dedicator of cytokinesis 7##NM_014495|ANGPTL3|27329|angiopoietin-like 3##AK315304|ANGPTL3|27329|angiopoietin-like 3##AK289426|ANGPTL3|27329|angiopoietin-like 3##BC007059|ANGPTL3|27329|angiopoietin-like 3##BC058287|ANGPTL3|27329|angiopoietin-like 3##AY358273|ANGPTL3|27329|angiopoietin-like 3##AF152562|ANGPTL3|27329|angiopoietin-like 3##BC032364|USP1|7398|ubiquitin specific peptidase 1##AB208893|USP1|7398|ubiquitin specific peptidase 1##AF117386|USP1|7398|ubiquitin specific peptidase 1##AB014458|USP1|7398|ubiquitin specific peptidase 1##NM_032852|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##NM_178221|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##AK027773|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC018678|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC033024|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC008395|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##NM_012183|FOXD3|27022|forkhead box D3##L12142|FOXD3|27022|forkhead box D3	0.999894	0.0	
chr16	62903854	62903993	reg1003652.p2	8.411	+	AK124734 NM_001796	-833185	-	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-4135726	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-4185267	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	2251979	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	2252045	-	TSC_hg19_v1_chr16_-_65155987 AK297377	2252071	-	AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK297377|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	0.981713	0.0	denovo_WM_7:-26:0.930
chr6	11828566	11828700	reg1003877.p1	8.411	+	NM_001143948 NM_032744	-49354	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-290135	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-446093	-	NM_002114	184090	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	461960	+	TSC_hg19_v1_chr6_+_12514301 D28417	685669	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.984534	0.0	denovo_WM_7:0:0.964
chr8	141474747	141474904	reg1002630.p2	8.410	+	AK128755 NM_031466	-6148	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	-6967	-	AB067469 TSC_hg19_v1_chr8_-_141467841	-7000	-	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	46567	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	46738	+	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	170799	-	AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2	0.0	0.0	
chr15	44954771	44954951	reg1003929.p1	8.409	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-125479	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-125519	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-125549	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	983	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	1019	-	BC036924 NM_001145112	14224	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	0.999896	0.0	
chr14	39639977	39640157	reg1003178.p2	8.408	+	AK310730 TSC_hg19_v1_chr14_-_39639538 AK294339 AL833179 BC047328 BX161510 AK315900 BX248013 AK056690 NM_001079537 NM_177452 BC030604	-495	-	AF027150 NM_001009182 NM_001009183 NM_003616 BC028095 BC104968 AK313947 AB037701 AB037702 AB037703	-56600	+	TSC_hg19_v1_chr14_-_39572440 AK299862 BC036649 NM_006364 AK303485	-67634	-	TSC_hg19_v1_chr14_+_39644403 NM_002687 AK292579 AK223612 U77718 BC062602 Y09703 Y10351	4362	+	AK304622 TSC_hg19_v1_chr14_+_39649841	9709	+	AK314069 BX648228 NM_054024 BC035981 BC130537 BC130563 AB527370 AM393252 AM393582 HQ258350 AF390175	63151	+	AK310730|TRAPPC6B|122553|trafficking protein particle complex 6B##AK294339|TRAPPC6B|122553|trafficking protein particle complex 6B##AL833179|TRAPPC6B|122553|trafficking protein particle complex 6B##BC047328|TRAPPC6B|122553|trafficking protein particle complex 6B##BX161510|TRAPPC6B|122553|trafficking protein particle complex 6B##AK315900|TRAPPC6B|122553|trafficking protein particle complex 6B##BX248013|TRAPPC6B|122553|trafficking protein particle complex 6B##AK056690|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_001079537|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_177452|TRAPPC6B|122553|trafficking protein particle complex 6B##BC030604|TRAPPC6B|122553|trafficking protein particle complex 6B##AF027150|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009182|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009183|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_003616|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC028095|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC104968|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK313947|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037701|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037702|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037703|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK299862|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##BC036649|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_006364|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK303485|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_002687|PNN|5411|pinin, desmosome associated protein##AK292579|PNN|5411|pinin, desmosome associated protein##AK223612|PNN|5411|pinin, desmosome associated protein##U77718|PNN|5411|pinin, desmosome associated protein##BC062602|PNN|5411|pinin, desmosome associated protein##Y09703|PNN|5411|pinin, desmosome associated protein##AK304622|PNN|5411|pinin, desmosome associated protein##AK314069|MIA2|117153|melanoma inhibitory activity 2##BX648228|MIA2|117153|melanoma inhibitory activity 2##NM_054024|MIA2|117153|melanoma inhibitory activity 2##BC035981|MIA2|117153|melanoma inhibitory activity 2##BC130537|MIA2|117153|melanoma inhibitory activity 2##BC130563|MIA2|117153|melanoma inhibitory activity 2##AM393252|MIA2|117153|melanoma inhibitory activity 2##AM393582|MIA2|117153|melanoma inhibitory activity 2##HQ258350|MIA2|117153|melanoma inhibitory activity 2##AF390175|MIA2|117153|melanoma inhibitory activity 2	0.992514	0.0	
chr6_qbl_hap6	4518162	4518342	reg1003570.p2	8.408	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.029796	0.0	denovo_WM_7:-14:0.527	denovo_WM_7:-15:0.470
chr7	5624716	5624883	reg1003175.p2	8.408	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-54590	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-55553	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-55958	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	7639	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	7711	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	196423	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	1.460518	0.0	denovo_WM_7:43:0.449	denovo_WM_7:-103:0.447
chr4	4695079	4695189	reg1005793.p2	8.407	+	TSC_hg19_v1_chr4_+_4543925 BC025734	-151250	+	TSC_hg19_v1_chr4_-_4543750 NM_016930	-151373	-	TSC_hg19_v1_chr4_-_4543741 AK310026	-151403	-	TSC_hg19_v1_chr4_+_4861391 NM_002448 AK290636 M97676 BC021285	166264	+	AF274956 BC031391 DQ890790 DQ890792 DQ893946 NM_018659 AY359101 AF193766	326012	-	TSC_hg19_v1_chr4_+_5053252 AK313846 AK292696 BC069203	358146	+	BC025734|LOC100507266|100507266|uncharacterized LOC100507266##NM_016930|STX18|53407|syntaxin 18##AK310026|STX18|53407|syntaxin 18##NM_002448|MSX1|4487|msh homeobox 1##AK290636|MSX1|4487|msh homeobox 1##M97676|MSX1|4487|msh homeobox 1##BC021285|MSX1|4487|msh homeobox 1##AF274956|CYTL1|54360|cytokine-like 1##BC031391|CYTL1|54360|cytokine-like 1##DQ890790|CYTL1|54360|cytokine-like 1##DQ890792|CYTL1|54360|cytokine-like 1##DQ893946|CYTL1|54360|cytokine-like 1##NM_018659|CYTL1|54360|cytokine-like 1##AY359101|CYTL1|54360|cytokine-like 1##AF193766|CYTL1|54360|cytokine-like 1##AK313846|STK32B|55351|serine/threonine kinase 32B##AK292696|STK32B|55351|serine/threonine kinase 32B##BC069203|STK32B|55351|serine/threonine kinase 32B	0.999132	0.0	denovo_WM_7:-26:0.239	denovo_WM_7:-27:0.239	denovo_WM_7:-28:0.239	denovo_WM_7:-29:0.239
chr21	45275208	45275322	reg1002133.p1	8.406	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-65780	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	-65850	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-79036	-	TSC_hg19_v1_chr21_+_45285029 AY358704	9795	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	9858	+	AK300562 NM_001037553	70013	+	AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.991743	0.0	denovo_WM_7:34:0.331	denovo_WM_7:35:0.331	denovo_WM_7:36:0.331
chr11	19496891	19497055	reg1003089.p1	8.405	+	AB063115 NM_001111018 AJ488205	-124658	+	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	-233772	-	TSC_hg19_v1_chr11_-_19262479 AK055206 BC108700 BC126400 BC126402 NM_024680	-234498	-	TSC_hg19_v1_chr11_+_19734821 AB037840 BC150290 NM_001244963 NM_145117 NM_182964 AB063116	237893	+	TSC_hg19_v1_chr11_+_20044396 AK298346 AJ488208	547415	+	TSC_hg19_v1_chr11_+_20049136 AK307574	552159	+	AB063115|NAV2|89797|neuron navigator 2##NM_001111018|NAV2|89797|neuron navigator 2##AJ488205|NAV2|89797|neuron navigator 2##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8##AK055206|E2F8|79733|E2F transcription factor 8##BC108700|E2F8|79733|E2F transcription factor 8##BC126400|E2F8|79733|E2F transcription factor 8##BC126402|E2F8|79733|E2F transcription factor 8##NM_024680|E2F8|79733|E2F transcription factor 8##AB037840|NAV2|89797|neuron navigator 2##BC150290|NAV2|89797|neuron navigator 2##NM_001244963|NAV2|89797|neuron navigator 2##NM_145117|NAV2|89797|neuron navigator 2##NM_182964|NAV2|89797|neuron navigator 2##AB063116|NAV2|89797|neuron navigator 2##AK298346|NAV2|89797|neuron navigator 2##AJ488208|NAV2|89797|neuron navigator 2##AK307574|NAV2|89797|neuron navigator 2	0.0	0.0	
chr19	38450377	38450537	reg1003016.p1	8.404	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-52545	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-52600	+	AK302913 AY026504 AK128826 NM_031951	-53183	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	264378	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	269859	-	TSC_hg19_v1_chr19_-_38720336 AK297581	269877	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.993947	0.0	denovo_WM_7:8:0.416	denovo_WM_7:9:0.416
chr11	62628723	62628853	reg1003856.p1	8.403	+	TSC_hg19_v1_chr11_+_62623580 NM_001012662 NM_001012664 NM_002394 BC001061 AK025584 BC003000	-5238	+	BC000839 BC027980 BC011809 BC017253 BC063571 TSC_hg19_v1_chr11_-_62623358 AK095849	-5503	-	AK001301 NM_018093	-21161	-	TSC_hg19_v1_chr11_+_62648367 NM_001013251 AK304685 AK090758 AX746603 J03569 AK304497 AB018010 J02939 AK225304 J02769 EU832612 EU832683	19719	+	TSC_hg19_v1_chr11_+_62649170 AK308797 AK311592 AF055031	20404	+	BC007740 AK312374 TSC_hg19_v1_chr11_-_62688827	59995	-	NM_001012662|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_001012664|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_002394|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC001061|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK025584|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC003000|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC000839|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC027980|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC011809|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC017253|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC063571|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK095849|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK001301|WDR74|54663|WD repeat domain 74##NM_018093|WDR74|54663|WD repeat domain 74##NM_001013251|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304685|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK090758|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J03569|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304497|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AB018010|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02939|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK225304|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02769|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832612|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832683|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK308797|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK311592|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AF055031|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC007740|CHRM1|1128|cholinergic receptor, muscarinic 1##AK312374|CHRM1|1128|cholinergic receptor, muscarinic 1	0.047686	0.0	
chr18	3787435	3787611	reg1003780.p2	8.403	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-193381	+	NM_173211	-333752	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-335892	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	57807	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	86761	-	AK294777 AK294717 NM_001242762 NM_001242763	87204	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	1.991769	0.0	denovo_WM_7:-17:0.442	denovo_WM_7:-18:0.295	denovo_WM_7:-33:0.323	denovo_WM_7:-34:0.470
chr9	123969965	123970102	reg1003647.p1	8.403	+	TSC_hg19_v1_chr9_-_123964341 NM_016322	-5683	-	TSC_hg19_v1_chr9_-_123964201 AK090889	-5848	-	TSC_hg19_v1_chr9_-_123964148 AK023524	-5887	-	TSC_hg19_v1_chr9_+_124030407 NM_001127662 NM_001127663 NM_001127664 NM_001127665 NM_001127666 NM_001127667 NM_198252 AK096280	60356	+	TSC_hg19_v1_chr9_+_124030439 AK304629 AK295572 AK300631	60396	+	AK295201 TSC_hg19_v1_chr9_+_124030468	60429	+	NM_016322|RAB14|51552|RAB14, member RAS oncogene family##AK090889|RAB14|51552|RAB14, member RAS oncogene family##AK023524|RAB14|51552|RAB14, member RAS oncogene family##NM_001127662|GSN|2934|gelsolin##NM_001127663|GSN|2934|gelsolin##NM_001127664|GSN|2934|gelsolin##NM_001127665|GSN|2934|gelsolin##NM_001127666|GSN|2934|gelsolin##NM_001127667|GSN|2934|gelsolin##NM_198252|GSN|2934|gelsolin##AK096280|GSN|2934|gelsolin##AK304629|GSN|2934|gelsolin##AK295572|GSN|2934|gelsolin##AK300631|GSN|2934|gelsolin##AK295201|GSN|2934|gelsolin	0.991337	0.0	denovo_WM_7:14:0.914
chr7	156762953	156763077	reg1003523.p2	8.402	+	TSC_hg19_v1_chr7_+_156742419 AY576779 NM_138400	-20600	+	TSC_hg19_v1_chr7_-_156685878 NM_022458	-77099	-	TSC_hg19_v1_chr7_-_156685868 AL834394 AB463099 AM392621 AM393143 AM393254 AM393828 CU676016 AF402318 BC017663 BC063649 AF107454 AK021727 AK291037 AK299753	-77268	-	TSC_hg19_v1_chr7_+_156798463 AY927456 AY927462 AY927463 AY927458	35485	+	AY927459 AY927461 TSC_hg19_v1_chr7_-_156802024 AY927460 AY927464 NM_001165255	39039	-	X56537 TSC_hg19_v1_chr7_-_156802679	39601	-	AY576779|NOM1|64434|nucleolar protein with MIF4G domain 1##NM_138400|NOM1|64434|nucleolar protein with MIF4G domain 1##NM_022458|LMBR1|64327|limb region 1 homolog (mouse)##AL834394|LMBR1|64327|limb region 1 homolog (mouse)##AM392621|LMBR1|64327|limb region 1 homolog (mouse)##AM393143|LMBR1|64327|limb region 1 homolog (mouse)##AM393254|LMBR1|64327|limb region 1 homolog (mouse)##AM393828|LMBR1|64327|limb region 1 homolog (mouse)##AF402318|LMBR1|64327|limb region 1 homolog (mouse)##BC017663|LMBR1|64327|limb region 1 homolog (mouse)##BC063649|LMBR1|64327|limb region 1 homolog (mouse)##AK021727|LMBR1|64327|limb region 1 homolog (mouse)##AK291037|LMBR1|64327|limb region 1 homolog (mouse)##AK299753|LMBR1|64327|limb region 1 homolog (mouse)##AY927462|MNX1|3110|motor neuron and pancreas homeobox 1##AY927459|MNX1|3110|motor neuron and pancreas homeobox 1##AY927461|MNX1|3110|motor neuron and pancreas homeobox 1##AY927460|MNX1|3110|motor neuron and pancreas homeobox 1##AY927464|MNX1|3110|motor neuron and pancreas homeobox 1##NM_001165255|MNX1|3110|motor neuron and pancreas homeobox 1##X56537|MNX1|3110|motor neuron and pancreas homeobox 1	0.99856	0.773294	CTCF.p2:9:0.773	denovo_WM_7:-21:0.494	denovo_WM_7:-22:0.494
chr8	137250595	137250728	reg1003307.p1	8.402	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-780460	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-781003	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1525387	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	2258445	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2675583	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3464621	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.992376	0.0	denovo_WM_7:-45:0.761
chr1	151138473	151138610	reg1003668.p1	8.400	+	TSC_hg19_v1_chr1_-_151138337 BX647911 NM_212551 AK298706 NM_001136543	-165	-	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	-9411	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	-19494	-	NM_001204856 NM_024041 AK301644 TSC_hg19_v1_chr1_+_151138545 AK056322 BC000264 DQ892531 DQ895742	21	+	AF165217 AK313280 AK092700 AK300675 AX747678 BC017810 BX647346 AF177173 NM_013353	9944	-	DQ892940 DQ896189 AB464341 BT019356 BT019357 AK222935 AK222939 TSC_hg19_v1_chr1_-_151162644 BC003151 D43642 NM_005997 AK225130 AK297565	24080	-	BX647911|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_212551|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##AK298706|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001136543|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001204856|SCNM1|79005|sodium channel modifier 1##NM_024041|SCNM1|79005|sodium channel modifier 1##AK301644|SCNM1|79005|sodium channel modifier 1##AK056322|SCNM1|79005|sodium channel modifier 1##BC000264|SCNM1|79005|sodium channel modifier 1##DQ892531|SCNM1|79005|sodium channel modifier 1##DQ895742|SCNM1|79005|sodium channel modifier 1##AF165217|TMOD4|29765|tropomodulin 4 (muscle)##AK313280|TMOD4|29765|tropomodulin 4 (muscle)##AK092700|TMOD4|29765|tropomodulin 4 (muscle)##AK300675|TMOD4|29765|tropomodulin 4 (muscle)##BC017810|TMOD4|29765|tropomodulin 4 (muscle)##BX647346|TMOD4|29765|tropomodulin 4 (muscle)##AF177173|TMOD4|29765|tropomodulin 4 (muscle)##NM_013353|TMOD4|29765|tropomodulin 4 (muscle)##DQ892940|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ896189|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019356|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019357|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222935|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222939|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BC003151|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##D43642|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##NM_005997|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK225130|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK297565|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)	0.0	0.0	
chr5	98340817	98340970	reg1004391.p1	8.399	+	BC054860 BC117134 NM_001270 AF006513	-78665	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	-235852	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-1821906	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	1530180	+	AF529367 TSC_hg19_v1_chr5_+_99871306	1530377	+	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	1898035	-	BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF529367|FAM174A|345757|family with sequence similarity 174, member A##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	0.0	0.0	
chr5	132361200	132361317	reg1003168.p1	8.398	+	TSC_hg19_v1_chr5_-_132299327 AF197927 AK055638 BC040454 BC100287 AB209547 AK307407 NM_014423	-61949	-	TSC_hg19_v1_chr5_-_132299248 BC137226 BC144538	-62007	-	TSC_hg19_v1_chr5_-_132299222 BC063007 BC025700	-62048	-	TSC_hg19_v1_chr5_-_132362242 CU675047 CU692618 BC015986 BC022443 AK000101 NM_017665 AK122970 BC005211	963	-	AK300543 TSC_hg19_v1_chr5_-_132362264	1009	-	TSC_hg19_v1_chr5_+_132387694 NM_002154 AB023420	26380	+	AF197927|AFF4|27125|AF4/FMR2 family, member 4##AK055638|AFF4|27125|AF4/FMR2 family, member 4##BC040454|AFF4|27125|AF4/FMR2 family, member 4##BC100287|AFF4|27125|AF4/FMR2 family, member 4##AB209547|AFF4|27125|AF4/FMR2 family, member 4##AK307407|AFF4|27125|AF4/FMR2 family, member 4##NM_014423|AFF4|27125|AF4/FMR2 family, member 4##BC137226|AFF4|27125|AF4/FMR2 family, member 4##BC144538|AFF4|27125|AF4/FMR2 family, member 4##BC063007|AFF4|27125|AF4/FMR2 family, member 4##BC025700|AFF4|27125|AF4/FMR2 family, member 4##BC015986|ZCCHC10|54819|zinc finger, CCHC domain containing 10##BC022443|ZCCHC10|54819|zinc finger, CCHC domain containing 10##AK000101|ZCCHC10|54819|zinc finger, CCHC domain containing 10##NM_017665|ZCCHC10|54819|zinc finger, CCHC domain containing 10##AK122970|ZCCHC10|54819|zinc finger, CCHC domain containing 10##BC005211|ZCCHC10|54819|zinc finger, CCHC domain containing 10##AK300543|ZCCHC10|54819|zinc finger, CCHC domain containing 10##NM_002154|HSPA4|3308|heat shock 70kDa protein 4##AB023420|HSPA4|3308|heat shock 70kDa protein 4	1.958212	0.0	denovo_WM_7:-38:0.238	denovo_WM_7:-39:0.641	denovo_WM_7:-54:0.790
chr18	51795640	51795815	reg1003734.p2	8.397	+	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	-44650	-	TSC_hg19_v1_chr18_-_51750997 BC032638	-44762	-	AF072246 TSC_hg19_v1_chr18_-_51750614	-45190	-	NM_007195 TSC_hg19_v1_chr18_+_51795943 AK301578 AF140501 BC032617 BC032662 AL136670 AF245438 AK093688 AB463184 AM392978 DQ890893 DQ896811 CU689468	213	+	AB528241 AF480305 NM_139171	85215	-	BX640877 NM_173529	89443	+	AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##NM_007195|POLI|11201|polymerase (DNA directed) iota##AK301578|POLI|11201|polymerase (DNA directed) iota##AF140501|POLI|11201|polymerase (DNA directed) iota##BC032617|POLI|11201|polymerase (DNA directed) iota##BC032662|POLI|11201|polymerase (DNA directed) iota##AL136670|POLI|11201|polymerase (DNA directed) iota##AF245438|POLI|11201|polymerase (DNA directed) iota##AK093688|POLI|11201|polymerase (DNA directed) iota##AM392978|POLI|11201|polymerase (DNA directed) iota##DQ890893|POLI|11201|polymerase (DNA directed) iota##DQ896811|POLI|11201|polymerase (DNA directed) iota##AF480305|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##NM_139171|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##BX640877|C18orf54|162681|chromosome 18 open reading frame 54##NM_173529|C18orf54|162681|chromosome 18 open reading frame 54	0.999294	0.014169	denovo_WM_7:-47:0.805
chr4_ctg9_hap1	565124	565265	reg1003441.p2	8.397	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997218	0.0	denovo_WM_7:7:0.841
chr13	115046576	115046707	reg1003244.p1	8.396	+	TSC_hg19_v1_chr13_+_115000402 AK296424 BC017244 BC010875 AK315302 U18291 AB590520 AF164598 CU677877	-46179	+	TSC_hg19_v1_chr13_+_115000360 NM_001078645 NM_003903	-46282	+	TSC_hg19_v1_chr13_-_114898084 BC047242 BC038456 NM_007368	-148538	-	TSC_hg19_v1_chr13_+_115047085 AY013250 NM_023011 NM_080687 BC023569 BC047735 AK294545 AK302003 AF318575	473	+	TSC_hg19_v1_chr13_+_115080005 NM_001164144 NM_001164145 NM_032436 AK096346 BC065237	33345	+	None	None	None	AK296424|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC017244|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC010875|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AK315302|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##U18291|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AF164598|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_001078645|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_003903|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC047242|RASA3|22821|RAS p21 protein activator 3##BC038456|RASA3|22821|RAS p21 protein activator 3##NM_007368|RASA3|22821|RAS p21 protein activator 3##AY013250|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_023011|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_080687|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC023569|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC047735|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK294545|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK302003|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AF318575|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_001164144|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_001164145|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_032436|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AK096346|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##BC065237|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1	0.991921	0.0	denovo_WM_7:-45:0.833
chr20	47274400	47274514	reg1003590.p1	8.396	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-859139	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-859705	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-1143773	+	AB037836 TSC_hg19_v1_chr20_-_47444291	169829	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	169982	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	263861	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.0	0.998604	CTCF.p2:-20:0.999
chr4	112970426	112970535	reg1003881.p2	8.395	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1407202	-	BC106010 TSC_hg19_v1_chr4_-_111558185 AK291591 AF048720 AF048721	-1412311	-	BC007987 AF048722 TSC_hg19_v1_chr4_-_111544234 BC013998 NM_000325	-1426205	-	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	96134	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	182604	+	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	236521	-	NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC106010|PITX2|5308|paired-like homeodomain 2##AK291591|PITX2|5308|paired-like homeodomain 2##AF048720|PITX2|5308|paired-like homeodomain 2##AF048721|PITX2|5308|paired-like homeodomain 2##AF048722|PITX2|5308|paired-like homeodomain 2##BC013998|PITX2|5308|paired-like homeodomain 2##NM_000325|PITX2|5308|paired-like homeodomain 2##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain	0.980559	0.0	denovo_WM_7:-32:0.486	denovo_WM_7:-34:0.426
chr8	66656010	66656132	reg1003808.p1	8.394	+	NM_001145838 CU692168 BX537854 D13634	-73904	+	NM_001145839 NM_014637 TSC_hg19_v1_chr8_+_66556973 AK316202 BX647507 AK304716 BC036116 BC043498 AK298945	-99111	+	TSC_hg19_v1_chr8_-_66546413 BC011607 BC018846 NM_018120	-109639	-	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	45180	-	NM_001242318	97897	-	TSC_hg19_v1_chr8_-_66754300 AK292680	98221	-	NM_001145838|MTFR1|9650|mitochondrial fission regulator 1##BX537854|MTFR1|9650|mitochondrial fission regulator 1##D13634|MTFR1|9650|mitochondrial fission regulator 1##NM_001145839|MTFR1|9650|mitochondrial fission regulator 1##NM_014637|MTFR1|9650|mitochondrial fission regulator 1##AK316202|MTFR1|9650|mitochondrial fission regulator 1##BX647507|MTFR1|9650|mitochondrial fission regulator 1##AK304716|MTFR1|9650|mitochondrial fission regulator 1##BC036116|MTFR1|9650|mitochondrial fission regulator 1##BC043498|MTFR1|9650|mitochondrial fission regulator 1##AK298945|MTFR1|9650|mitochondrial fission regulator 1##BC011607|ARMC1|55156|armadillo repeat containing 1##BC018846|ARMC1|55156|armadillo repeat containing 1##NM_018120|ARMC1|55156|armadillo repeat containing 1##HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK292680|PDE7A|5150|phosphodiesterase 7A	0.987109	0.0	denovo_WM_7:9:0.327	denovo_WM_7:10:0.344	denovo_WM_7:11:0.257
chr10	109774851	109775031	reg1003354.p2	8.393	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-850565	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1315882	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3373896	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1908268	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1908336	-	NM_019903 AB209810 BC057285	1990840	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	0.0	0.0	
chr8	11396543	11396683	reg1001882.p1	8.393	+	S76617 NM_001715 BC018703 BC004473 BC038555	-45020	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-72384	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-191609	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	165107	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	230655	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	263571	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.980829	0.0	denovo_WM_7:-20:0.933
chr8	42248904	42249084	reg1002549.p1	8.393	+	AB017788 BC107046 BC107047 AF177397 NM_014420 AK311714 AK301609	-14342	-	NM_002690 AK223537 TSC_hg19_v1_chr8_+_42196014 BC100288 AK294025 AK314976 D29013 M13140 BC106909 AB464039 CR536503 CR541802 L11607	-52937	+	BC090865 TSC_hg19_v1_chr8_+_42128868 AF080158 AK298241 AB209090 BC108694 AK290952 BC144080 BX648165	-120079	+	NM_001135694 NM_005662 TSC_hg19_v1_chr8_+_42249355	324	+	TSC_hg19_v1_chr8_+_42249386 AF038962	393	+	TSC_hg19_v1_chr8_+_42249394 AK307224 AK058201 AK308760 BC056870 BC002456	417	+	AB017788|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107046|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107047|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AF177397|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_014420|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AK301609|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_002690|POLB|5423|polymerase (DNA directed), beta##AK223537|POLB|5423|polymerase (DNA directed), beta##BC100288|POLB|5423|polymerase (DNA directed), beta##AK294025|POLB|5423|polymerase (DNA directed), beta##AK314976|POLB|5423|polymerase (DNA directed), beta##D29013|POLB|5423|polymerase (DNA directed), beta##M13140|POLB|5423|polymerase (DNA directed), beta##BC106909|POLB|5423|polymerase (DNA directed), beta##CR536503|POLB|5423|polymerase (DNA directed), beta##CR541802|POLB|5423|polymerase (DNA directed), beta##L11607|POLB|5423|polymerase (DNA directed), beta##BC090865|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AF080158|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK298241|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AB209090|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC108694|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK290952|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC144080|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BX648165|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001135694|VDAC3|7419|voltage-dependent anion channel 3##NM_005662|VDAC3|7419|voltage-dependent anion channel 3##AF038962|VDAC3|7419|voltage-dependent anion channel 3##AK307224|VDAC3|7419|voltage-dependent anion channel 3##AK058201|VDAC3|7419|voltage-dependent anion channel 3##AK308760|VDAC3|7419|voltage-dependent anion channel 3##BC056870|VDAC3|7419|voltage-dependent anion channel 3	0.996485	0.0	
chr15	95830489	95830650	reg1003211.p1	8.391	+	NM_001159644 BC025708 BC111024 AK002037	-931260	+	NM_001159643 NM_018349 AY656717 BC131527	-989108	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-1055711	+	TSC_hg19_v1_chr15_-_95870310 BC040875	39750	-	BC106083 NM_001145155 FM208183	1038592	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	1043408	+	NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.372544	0.0	denovo_WM_7:14:0.338
chr1	92951627	92951757	reg1003184.p2	8.390	+	BC032751 TSC_hg19_v1_chr1_-_92951630 NM_001127216	-77	-	TSC_hg19_v1_chr1_-_92949508 AK123009	-2160	-	AK313876 NM_001127215 TSC_hg19_v1_chr1_-_92949370	-2313	-	U67369 NM_005263 TSC_hg19_v1_chr1_-_92952458	758	-	AB449875 AB587441 AF008915 AF042345 NM_005665	306263	-	TSC_hg19_v1_chr1_+_93297596 NM_000969 AK092963 AK095815 AK314720 AB055762	345872	+	BC032751|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127216|GFI1|2672|growth factor independent 1 transcription repressor##AK123009|GFI1|2672|growth factor independent 1 transcription repressor##AK313876|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127215|GFI1|2672|growth factor independent 1 transcription repressor##U67369|GFI1|2672|growth factor independent 1 transcription repressor##NM_005263|GFI1|2672|growth factor independent 1 transcription repressor##AB449875|EVI5|7813|ecotropic viral integration site 5##AF008915|EVI5|7813|ecotropic viral integration site 5##NM_005665|EVI5|7813|ecotropic viral integration site 5##NM_000969|RPL5|6125|ribosomal protein L5##AK092963|RPL5|6125|ribosomal protein L5##AK095815|RPL5|6125|ribosomal protein L5##AK314720|RPL5|6125|ribosomal protein L5##AB055762|RPL5|6125|ribosomal protein L5	0.997839	0.0	denovo_WM_7:-27:0.881
chr12	109324134	109324264	reg1003267.p1	8.388	+	NM_001917 AX741655 AX741656 AX741658 AX776478 AX776479 AX786386 AK312995 BX538210 BC029057 BC074770	-50279	+	TSC_hg19_v1_chr12_-_109251360 BC062341 NM_001161330 NM_018984	-72777	-	AB072355 AB072356 TSC_hg19_v1_chr12_-_109251307	-72909	-	BC033587 NM_018711 TSC_hg19_v1_chr12_-_109458878	134662	-	TSC_hg19_v1_chr12_+_109490413 NM_032663 BC004868 AJ586136 CU678780 DQ893401 DQ896783	166225	+	BC070489 TSC_hg19_v1_chr12_-_109531278 AY754389 AK309062 NM_001001655 NM_001145374 NM_001145375 NM_001205179 NM_001205180	207082	-	NM_001917|DAO|1610|D-amino-acid oxidase##AX741655|DAO|1610|D-amino-acid oxidase##AX741656|DAO|1610|D-amino-acid oxidase##AX741658|DAO|1610|D-amino-acid oxidase##AX776478|DAO|1610|D-amino-acid oxidase##AX776479|DAO|1610|D-amino-acid oxidase##AX786386|DAO|1610|D-amino-acid oxidase##AK312995|DAO|1610|D-amino-acid oxidase##BX538210|DAO|1610|D-amino-acid oxidase##BC029057|DAO|1610|D-amino-acid oxidase##BC074770|DAO|1610|D-amino-acid oxidase##BC062341|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_001161330|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_018984|SSH1|54434|slingshot homolog 1 (Drosophila)##AB072355|SSH1|54434|slingshot homolog 1 (Drosophila)##AB072356|SSH1|54434|slingshot homolog 1 (Drosophila)##BC033587|SVOP|55530|SV2 related protein homolog (rat)##NM_018711|SVOP|55530|SV2 related protein homolog (rat)##NM_032663|USP30|84749|ubiquitin specific peptidase 30##BC004868|USP30|84749|ubiquitin specific peptidase 30##AJ586136|USP30|84749|ubiquitin specific peptidase 30##DQ893401|USP30|84749|ubiquitin specific peptidase 30##DQ896783|USP30|84749|ubiquitin specific peptidase 30##BC070489|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##AY754389|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##AK309062|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001001655|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001145374|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001145375|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001205179|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)##NM_001205180|ALKBH2|121642|alkB, alkylation repair homolog 2 (E. coli)	0.999928	0.0	
chr2	65390022	65390176	reg1003277.p1	8.386	+	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-32758	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	-32880	-	AF498929 BT019528 BT019529 CR533479 CR536488 AB464118 AB590355 AM392684 CU674450 DQ894084 EU831590 EU831675 TSC_hg19_v1_chr2_-_65357083 M28209	-33024	-	TSC_hg19_v1_chr2_-_65454728 AK055581	64637	-	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	64836	+	TSC_hg19_v1_chr2_-_65593766 AK299079	203674	-	NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family##AF498929|RAB1A|5861|RAB1A, member RAS oncogene family##BT019528|RAB1A|5861|RAB1A, member RAS oncogene family##BT019529|RAB1A|5861|RAB1A, member RAS oncogene family##CR533479|RAB1A|5861|RAB1A, member RAS oncogene family##CR536488|RAB1A|5861|RAB1A, member RAS oncogene family##AM392684|RAB1A|5861|RAB1A, member RAS oncogene family##DQ894084|RAB1A|5861|RAB1A, member RAS oncogene family##EU831590|RAB1A|5861|RAB1A, member RAS oncogene family##EU831675|RAB1A|5861|RAB1A, member RAS oncogene family##M28209|RAB1A|5861|RAB1A, member RAS oncogene family##AK055581|LOC729324|729324|hCG1986447##NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2	1.447579	0.0	denovo_WM_7:43:0.265	denovo_WM_7:-105:0.536	denovo_WM_7:-106:0.268
chr6	42346027	42346169	reg1003803.p1	8.386	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-160481	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-160498	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-160501	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	73725	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	185652	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	185679	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.991184	0.030622	denovo_WM_7:31:0.225	denovo_WM_7:33:0.705
chr10	12064776	12064956	reg1003340.p2	8.385	+	AK056703 TSC_hg19_v1_chr10_-_11936707	-128164	-	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	-199508	+	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	-280468	+	TSC_hg19_v1_chr10_-_12084777 BC054011 AK310925 BC114964 BC115737 BC090919 NM_015542 AF318574 AF301013 AK096191	19942	-	NM_080599 TSC_hg19_v1_chr10_-_12085142	20216	-	TSC_hg19_v1_chr10_+_12110952 NM_018706	46070	+	AK056703|LOC219731|219731|uncharacterized LOC219731##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK310925|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC114964|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC115737|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC090919|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_015542|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF318574|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF301013|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AK096191|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1	0.025923	0.0	
chr12	122675474	122675629	reg1003608.p1	8.385	+	TSC_hg19_v1_chr12_+_122667676 NM_001098519	-7877	+	AB590927 BC132998 BC133000 AY499343 NM_001014336	-16817	-	AK124107 NM_152759	-23286	+	AY358940 AK095746 NM_030765 BC031399	12623	+	AB463568 AY313210 TSC_hg19_v1_chr12_-_122710587 DQ893061 DQ896313 AK222664 AF262240 BC011909 AK024768 AK057778 AK315629 BC095468	35030	-	BC046209 NM_019887 NM_138929	36492	-	NM_001098519|LRRC43|254050|leucine rich repeat containing 43##BC132998|IL31|386653|interleukin 31##BC133000|IL31|386653|interleukin 31##AY499343|IL31|386653|interleukin 31##NM_001014336|IL31|386653|interleukin 31##AK124107|LRRC43|254050|leucine rich repeat containing 43##NM_152759|LRRC43|254050|leucine rich repeat containing 43##AY358940|B3GNT4|79369|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4##AK095746|B3GNT4|79369|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4##NM_030765|B3GNT4|79369|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4##BC031399|B3GNT4|79369|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4##AY313210|DIABLO|56616|diablo, IAP-binding mitochondrial protein##DQ893061|DIABLO|56616|diablo, IAP-binding mitochondrial protein##DQ896313|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AK222664|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AF262240|DIABLO|56616|diablo, IAP-binding mitochondrial protein##BC011909|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AK024768|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AK057778|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AK315629|DIABLO|56616|diablo, IAP-binding mitochondrial protein##BC095468|DIABLO|56616|diablo, IAP-binding mitochondrial protein##BC046209|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_019887|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_138929|DIABLO|56616|diablo, IAP-binding mitochondrial protein	0.996387	0.222594	denovo_WM_7:-28:0.921	CTCF.p2:56:0.223
chr9	132663200	132663330	reg1003528.p2	8.384	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-65500	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-65543	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-65581	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	142089	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	142223	-	BC039728 NM_001136557 NM_001136558 NM_020960	152719	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.027236	0.0	
chr4	145556347	145556500	reg1002197.p1	8.383	+	AY950614 DQ893046 L07251 L07253 S77893 U00177 U00178 U00179 X57023 M12857 M36281 X51798 BC013328 EU338231 EU338232 EU338233 EU338234 L31860 X08054 BC005319 AK290561 NM_002099	-494578	-	AY509882 AY509883 AY950609 AY950610 AY950611 AY950612 U05255 J02982 BC121077 BC121078 EU338223 EU338224 EU338225 EU338226 EU338227 EU338228 EU338229 EU338230 EU338235 EU338236 EU338237 EU338238 BC069310 X08055 NM_002100	-615956	-	EU176664 BC064396 BC017864 M29610 NM_002102 NM_198682	-729736	-	NM_022475 AY009951 TSC_hg19_v1_chr4_+_145567307 AY009317 BC025311 BC015636 BC009298	10825	+	NM_001040876 NM_002940	462732	+	TSC_hg19_v1_chr4_-_146019349 AF132794 AL080090 BC005217 AB012109 NM_014885	462914	-	AY950614|GYPA|2993|glycophorin A (MNS blood group)##DQ893046|GYPA|2993|glycophorin A (MNS blood group)##L07251|GYPA|2993|glycophorin A (MNS blood group)##L07253|GYPA|2993|glycophorin A (MNS blood group)##U00177|GYPA|2993|glycophorin A (MNS blood group)##U00178|GYPA|2993|glycophorin A (MNS blood group)##U00179|GYPA|2993|glycophorin A (MNS blood group)##X57023|GYPA|2993|glycophorin A (MNS blood group)##M12857|GYPA|2993|glycophorin A (MNS blood group)##M36281|GYPA|2993|glycophorin A (MNS blood group)##X51798|GYPA|2993|glycophorin A (MNS blood group)##BC013328|GYPA|2993|glycophorin A (MNS blood group)##EU338231|GYPA|2993|glycophorin A (MNS blood group)##EU338232|GYPA|2993|glycophorin A (MNS blood group)##EU338233|GYPA|2993|glycophorin A (MNS blood group)##EU338234|GYPA|2993|glycophorin A (MNS blood group)##L31860|GYPA|2993|glycophorin A (MNS blood group)##X08054|GYPA|2993|glycophorin A (MNS blood group)##BC005319|GYPA|2993|glycophorin A (MNS blood group)##AK290561|GYPA|2993|glycophorin A (MNS blood group)##NM_002099|GYPA|2993|glycophorin A (MNS blood group)##AY509882|GYPB|2994|glycophorin B (MNS blood group)##AY509883|GYPB|2994|glycophorin B (MNS blood group)##AY950609|GYPB|2994|glycophorin B (MNS blood group)##AY950610|GYPB|2994|glycophorin B (MNS blood group)##AY950611|GYPB|2994|glycophorin B (MNS blood group)##U05255|GYPB|2994|glycophorin B (MNS blood group)##J02982|GYPB|2994|glycophorin B (MNS blood group)##BC121077|GYPB|2994|glycophorin B (MNS blood group)##BC121078|GYPB|2994|glycophorin B (MNS blood group)##EU338223|GYPB|2994|glycophorin B (MNS blood group)##EU338224|GYPB|2994|glycophorin B (MNS blood group)##EU338225|GYPB|2994|glycophorin B (MNS blood group)##EU338226|GYPB|2994|glycophorin B (MNS blood group)##EU338227|GYPB|2994|glycophorin B (MNS blood group)##EU338228|GYPB|2994|glycophorin B (MNS blood group)##EU338229|GYPB|2994|glycophorin B (MNS blood group)##EU338230|GYPB|2994|glycophorin B (MNS blood group)##EU338235|GYPB|2994|glycophorin B (MNS blood group)##EU338236|GYPB|2994|glycophorin B (MNS blood group)##EU338237|GYPB|2994|glycophorin B (MNS blood group)##EU338238|GYPB|2994|glycophorin B (MNS blood group)##BC069310|GYPB|2994|glycophorin B (MNS blood group)##X08055|GYPB|2994|glycophorin B (MNS blood group)##NM_002100|GYPB|2994|glycophorin B (MNS blood group)##EU176664|GYPE|2996|glycophorin E (MNS blood group)##BC064396|GYPE|2996|glycophorin E (MNS blood group)##BC017864|GYPE|2996|glycophorin E (MNS blood group)##M29610|GYPE|2996|glycophorin E (MNS blood group)##NM_002102|GYPE|2996|glycophorin E (MNS blood group)##NM_198682|GYPE|2996|glycophorin E (MNS blood group)##NM_022475|HHIP|64399|hedgehog interacting protein##AY009951|HHIP|64399|hedgehog interacting protein##AY009317|HHIP|64399|hedgehog interacting protein##BC025311|HHIP|64399|hedgehog interacting protein##BC015636|HHIP|64399|hedgehog interacting protein##BC009298|HHIP|64399|hedgehog interacting protein##NM_001040876|ABCE1|6059|ATP-binding cassette, sub-family E (OABP), member 1##NM_002940|ABCE1|6059|ATP-binding cassette, sub-family E (OABP), member 1##AF132794|ANAPC10|10393|anaphase promoting complex subunit 10##AL080090|ANAPC10|10393|anaphase promoting complex subunit 10##BC005217|ANAPC10|10393|anaphase promoting complex subunit 10##AB012109|ANAPC10|10393|anaphase promoting complex subunit 10##NM_014885|ANAPC10|10393|anaphase promoting complex subunit 10	1.933347	0.0	denovo_WM_7:-38:0.922	denovo_WM_7:44:0.608
chr12	52462808	52462912	reg1003718.p1	8.382	+	NM_002135 NM_173157 TSC_hg19_v1_chr12_+_52445225 AK075491 AK075054 AK314437 BC016147 L13740 D49728	-17644	+	AK297526 NM_001202233	-46245	+	TSC_hg19_v1_chr12_+_52400728 BC053666 NM_181711	-62119	+	TSC_hg19_v1_chr12_+_52463754 NM_001098673 NM_021934 AK021835	894	+	TSC_hg19_v1_chr12_+_52463790 BC064533 BC005151 AF218031 BC009937	938	+	CU688016 AJ717743 BC033114 BC065180 NM_001081492 NM_182507 TSC_hg19_v1_chr12_-_52585799	122884	-	NM_002135|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_173157|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075491|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075054|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK314437|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC016147|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##L13740|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##D49728|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK297526|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_001202233|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC053666|GRASP|160622|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein##NM_181711|GRASP|160622|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein##NM_001098673|C12orf44|60673|chromosome 12 open reading frame 44##NM_021934|C12orf44|60673|chromosome 12 open reading frame 44##AK021835|C12orf44|60673|chromosome 12 open reading frame 44##BC005151|C12orf44|60673|chromosome 12 open reading frame 44##AF218031|C12orf44|60673|chromosome 12 open reading frame 44##BC009937|C12orf44|60673|chromosome 12 open reading frame 44##AJ717743|KRT80|144501|keratin 80##BC033114|KRT80|144501|keratin 80##BC065180|KRT80|144501|keratin 80##NM_001081492|KRT80|144501|keratin 80##NM_182507|KRT80|144501|keratin 80	1.9914	0.037098	denovo_WM_7:-60:0.491	denovo_WM_7:-61:0.328	denovo_WM_7:-76:0.331	denovo_WM_7:-77:0.495
chr3	50911346	50911524	reg1003463.p1	8.382	+	AY254099 NM_004947 AY145303	-198753	+	TSC_hg19_v1_chr3_+_50654932 AK313565 U43784 AB528893 EU832627 EU832702 CU675717 AB451303 AB451434	-256503	+	BC001662 BC010407 TSC_hg19_v1_chr3_+_50654611 BC007591 U09578	-256808	+	NM_006010 TSC_hg19_v1_chr3_+_51422691	511256	+	TSC_hg19_v1_chr3_+_51422721 BC113588 BC113590 AK292243 BC007282 BT007110 EU832655 EU832733 BC033055	511346	+	NM_013286 TSC_hg19_v1_chr3_+_51428706	517267	+	AY254099|DOCK3|1795|dedicator of cytokinesis 3##NM_004947|DOCK3|1795|dedicator of cytokinesis 3##AY145303|DOCK3|1795|dedicator of cytokinesis 3##AK313565|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##U43784|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##EU832627|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##EU832702|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##AB451303|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##AB451434|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC001662|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC010407|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC007591|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##U09578|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##NM_006010|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC113588|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC113590|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##AK292243|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC007282|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BT007110|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##EU832655|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##EU832733|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC033055|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##NM_013286|RBM15B|29890|RNA binding motif protein 15B	1.985185	0.0	denovo_WM_7:47:0.544	denovo_WM_7:67:0.354	denovo_WM_7:68:0.229
chr4	79785674	79785794	reg1003703.p2	8.382	+	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	-88111	+	NM_017593 NM_198892 TSC_hg19_v1_chr4_+_79697532	-88198	+	TSC_hg19_v1_chr4_+_79697501 AL137661	-88251	+	AK055774 BX648346 CU689134 AY424281 BC029604 TSC_hg19_v1_chr4_-_79860593 BC031256 BC047510 AK291232 NM_001040202 AX775925	74748	-	BC063623 BC080651 BC004552 NM_032693	461427	-	CU688758 DQ891321 DQ894505 BC058888 AK312768 BC029820 BC048274 X78712 NM_033214 AK292241 BC027598	543633	-	AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase##NM_017593|BMP2K|55589|BMP2 inducible kinase##NM_198892|BMP2K|55589|BMP2 inducible kinase##AL137661|BMP2K|55589|BMP2 inducible kinase##AK055774|PAQR3|152559|progestin and adipoQ receptor family member III##BX648346|PAQR3|152559|progestin and adipoQ receptor family member III##AY424281|PAQR3|152559|progestin and adipoQ receptor family member III##BC029604|PAQR3|152559|progestin and adipoQ receptor family member III##BC031256|PAQR3|152559|progestin and adipoQ receptor family member III##BC047510|PAQR3|152559|progestin and adipoQ receptor family member III##AK291232|PAQR3|152559|progestin and adipoQ receptor family member III##NM_001040202|PAQR3|152559|progestin and adipoQ receptor family member III##AX775925|PAQR3|152559|progestin and adipoQ receptor family member III##BC063623|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC080651|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC004552|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##NM_032693|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##DQ891321|GK2|2712|glycerol kinase 2##DQ894505|GK2|2712|glycerol kinase 2##BC058888|GK2|2712|glycerol kinase 2##BC029820|GK2|2712|glycerol kinase 2##BC048274|GK2|2712|glycerol kinase 2##X78712|GK2|2712|glycerol kinase 2##NM_033214|GK2|2712|glycerol kinase 2##AK292241|GK2|2712|glycerol kinase 2##BC027598|GK2|2712|glycerol kinase 2	0.130194	0.67546	CTCF.p2:29:0.675
chr10	34736701	34736825	reg1003130.p2	8.381	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-1112765	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-1112949	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-1113310	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	367388	-	AK310225 AK300491 NM_001198778 NM_001198779	626449	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	642509	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.914904	0.0	denovo_WM_7:-16:0.756
chr10	75523311	75523491	reg1002400.p1	8.381	+	TSC_hg19_v1_chr10_+_75504148 AL832110 AK299826 AK309918	-19235	+	AK303085 AK298598 TSC_hg19_v1_chr10_+_75504129 NM_004922 NM_198597 AK316451 BC018928	-19270	+	TSC_hg19_v1_chr10_-_75490231 BC020053 BC046139 BC063124 BC099910 AK294783	-33157	-	TSC_hg19_v1_chr10_+_75532064 BC036037 NM_173540 BC100994 BC100995 BC100996 BC100997	8652	+	TSC_hg19_v1_chr10_+_75532065 AK314944 DQ894378 EU176260	8676	+	TSC_hg19_v1_chr10_+_75532277 AK095482	8885	+	AL832110|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK299826|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK309918|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK303085|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK298598|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##NM_004922|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##NM_198597|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK316451|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##BC018928|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##BC046139|BMS1P4|729096|BMS1 pseudogene 4##BC063124|BMS1P4|729096|BMS1 pseudogene 4##BC099910|BMS1P4|729096|BMS1 pseudogene 4##AK294783|BMS1P4|729096|BMS1 pseudogene 4##BC036037|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##NM_173540|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100994|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100995|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100996|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100997|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##AK314944|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##DQ894378|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##EU176260|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##AK095482|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)	1.999523	0.0	denovo_WM_7:32:0.426	denovo_WM_7:33:0.291	denovo_WM_7:48:0.294	denovo_WM_7:49:0.428
chr11	69064701	69064881	reg1003467.p1	8.379	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	-3169	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-207265	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-248365	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	391065	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	391119	+	BC000076 BC001501 BC014078 TSC_hg19_v1_chr11_+_69455939 M73554 BC023620	391159	+	AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1##BC000076|CCND1|595|cyclin D1##BC001501|CCND1|595|cyclin D1##BC014078|CCND1|595|cyclin D1##M73554|CCND1|595|cyclin D1##BC023620|CCND1|595|cyclin D1	0.822965	0.0	denovo_WM_7:-12:0.728
chr12	92458953	92459133	reg1003666.p1	8.378	+	NM_001920	-882238	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-882463	-	AK291309 BX571756 TSC_hg19_v1_chr12_-_91573325 NM_133503	-885732	-	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	80600	-	AJ845165 AJ845166 NM_001025233	358691	+	AJ845168 NM_001025232	362880	-	NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AK291309|DCN|1634|decorin##BX571756|DCN|1634|decorin##NM_133503|DCN|1634|decorin##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand	0.0	0.0	
chr4	146112652	146112832	reg1003281.p2	8.378	+	AK302581 NM_001102653	-11930	-	BC118572 BC118653 NM_017493	-16849	-	TSC_hg19_v1_chr4_+_146031528 X74987	-81192	+	TSC_hg19_v1_chr4_+_146403004 U59423 NM_005900 BC001878	290140	+	U59912 NM_001003688 U54826 AK293055	291216	+	TSC_hg19_v1_chr4_+_146540536 AK126662 NM_172250	427804	+	AK302581|OTUD4|54726|OTU domain containing 4##NM_001102653|OTUD4|54726|OTU domain containing 4##BC118572|OTUD4|54726|OTU domain containing 4##BC118653|OTUD4|54726|OTU domain containing 4##NM_017493|OTUD4|54726|OTU domain containing 4##X74987|ABCE1|6059|ATP-binding cassette, sub-family E (OABP), member 1##U59423|SMAD1|4086|SMAD family member 1##NM_005900|SMAD1|4086|SMAD family member 1##BC001878|SMAD1|4086|SMAD family member 1##U59912|SMAD1|4086|SMAD family member 1##NM_001003688|SMAD1|4086|SMAD family member 1##U54826|SMAD1|4086|SMAD family member 1##AK293055|SMAD1|4086|SMAD family member 1##AK126662|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##NM_172250|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type	1.044664	0.0	
chr1	119502617	119502781	reg1003390.p1	8.375	+	AB527095 AK091816 AX747199 AY555274 BX648110 NM_206996	-774886	-	TSC_hg19_v1_chr1_+_118472364 NM_006784 AK292438 AF083217 BC128385 BC128454 BC148244	-1030321	+	BC058836 TSC_hg19_v1_chr1_+_118472357	-1030346	+	AK127536 NM_152380	29479	-	TSC_hg19_v1_chr1_+_119683039 BC063600 BC043601	180327	+	TSC_hg19_v1_chr1_-_119683274 BC021722 CU692202 BC039889 AK223197 AJ242739 AK296799 BC044575 AK313740 AK300295 NM_015836 NM_201263	180570	-	AK091816|SPAG17|200162|sperm associated antigen 17##AY555274|SPAG17|200162|sperm associated antigen 17##BX648110|SPAG17|200162|sperm associated antigen 17##NM_206996|SPAG17|200162|sperm associated antigen 17##NM_006784|WDR3|10885|WD repeat domain 3##AK292438|WDR3|10885|WD repeat domain 3##AF083217|WDR3|10885|WD repeat domain 3##BC058836|WDR3|10885|WD repeat domain 3##AK127536|TBX15|6913|T-box 15##NM_152380|TBX15|6913|T-box 15##BC021722|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC039889|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK223197|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AJ242739|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK296799|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC044575|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK313740|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK300295|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_015836|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_201263|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial	0.991427	0.0	denovo_WM_7:0:0.755
chr16	8945757	8945937	reg1003093.p2	8.374	+	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-54149	+	TSC_hg19_v1_chr16_-_8891497 BC015912 AK225638 AL080088 AK314404 NM_015421 AK093383	-54302	-	TSC_hg19_v1_chr16_+_8814575 AK290501 NM_001127448 AK310771	-131267	+	NM_001042476 BC001333	16405	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	17013	-	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	111448	-	NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##BC015912|TMEM186|25880|transmembrane protein 186##AK225638|TMEM186|25880|transmembrane protein 186##AL080088|TMEM186|25880|transmembrane protein 186##AK314404|TMEM186|25880|transmembrane protein 186##NM_015421|TMEM186|25880|transmembrane protein 186##AK093383|TMEM186|25880|transmembrane protein 186##AK290501|ABAT|18|4-aminobutyrate aminotransferase##NM_001127448|ABAT|18|4-aminobutyrate aminotransferase##AK310771|ABAT|18|4-aminobutyrate aminotransferase##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)	1.7541	0.0	denovo_WM_7:-4:0.237	denovo_WM_7:-5:0.347	denovo_WM_7:-6:0.289	denovo_WM_7:8:0.298	denovo_WM_7:9:0.304	denovo_WM_7:10:0.269
chr19	50693798	50693941	reg1003189.p1	8.374	+	TSC_hg19_v1_chr19_+_50691445 AK125082	-2428	+	DQ890967 DQ894140 AK307321 BC029535 AY358196 AB590459 AK131024 NM_152358	-27461	-	TSC_hg19_v1_chr19_+_50529309 AK292452	-164546	+	TSC_hg19_v1_chr19_+_50706878 AY165122 BC129803 NM_001077186 NM_001145809 NM_024729 AK307783 AB290169	13022	+	BC018933 TSC_hg19_v1_chr19_+_50713879	19982	+	BC007877 TSC_hg19_v1_chr19_+_50796867	102975	+	AK125082|MYH14|79784|myosin, heavy chain 14, non-muscle##DQ890967|IZUMO2|126123|IZUMO family member 2##DQ894140|IZUMO2|126123|IZUMO family member 2##AK307321|IZUMO2|126123|IZUMO family member 2##BC029535|IZUMO2|126123|IZUMO family member 2##AY358196|IZUMO2|126123|IZUMO family member 2##AK131024|IZUMO2|126123|IZUMO family member 2##NM_152358|IZUMO2|126123|IZUMO family member 2##AK292452|ZNF473|25888|zinc finger protein 473##AY165122|MYH14|79784|myosin, heavy chain 14, non-muscle##BC129803|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001077186|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001145809|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_024729|MYH14|79784|myosin, heavy chain 14, non-muscle##AK307783|MYH14|79784|myosin, heavy chain 14, non-muscle##AB290169|MYH14|79784|myosin, heavy chain 14, non-muscle##BC018933|MYH14|79784|myosin, heavy chain 14, non-muscle##BC007877|MYH14|79784|myosin, heavy chain 14, non-muscle	0.987921	0.0	denovo_WM_7:22:0.790
chr6_qbl_hap6	4524364	4524513	reg1004505.p1	8.374	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.996311	0.0	denovo_WM_7:-12:0.252	denovo_WM_7:-15:0.504
chr10	69806921	69807042	reg1003360.p2	8.373	+	AK027835 TSC_hg19_v1_chr10_-_69752431	-54573	-	AK289743 NM_001142498 TSC_hg19_v1_chr10_+_69644954	-162032	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	-162189	+	TSC_hg19_v1_chr10_-_69834956 AK292809 BC015043	27999	-	BC039600 TSC_hg19_v1_chr10_-_69835041 AK026808 AY221963 AY650032 AY650033 AY650034	28045	-	TSC_hg19_v1_chr10_-_69835055 NM_015601 NM_022079	28126	-	AK027835|HERC4|26091|hect domain and RLD 4##AK289743|SIRT1|23411|sirtuin 1##NM_001142498|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1##AK292809|HERC4|26091|hect domain and RLD 4##BC015043|HERC4|26091|hect domain and RLD 4##BC039600|HERC4|26091|hect domain and RLD 4##AK026808|HERC4|26091|hect domain and RLD 4##AY221963|HERC4|26091|hect domain and RLD 4##AY650032|HERC4|26091|hect domain and RLD 4##AY650033|HERC4|26091|hect domain and RLD 4##AY650034|HERC4|26091|hect domain and RLD 4##NM_015601|HERC4|26091|hect domain and RLD 4##NM_022079|HERC4|26091|hect domain and RLD 4	0.994575	0.0	denovo_WM_7:-15:0.310	denovo_WM_7:-16:0.622
chr19	2512268	2512390	reg1003156.p1	8.373	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-36091	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-55369	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-55393	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	190366	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	190413	-	AK124445 TSC_hg19_v1_chr19_-_2717420	205020	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.815742	0.0	denovo_WM_7:27:0.706
chr8	8923380	8923525	reg1003470.p1	8.373	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-62947	+	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	-63087	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	-172514	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	84726	-	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	85648	-	TSC_hg19_v1_chr8_+_9413421 BC098394	489953	+	AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.024764	0.997141	CTCF.p2:-39:0.997
chr11	10339739	10339887	reg1002828.p2	8.371	+	TSC_hg19_v1_chr11_+_10326623 AK312893 BC015961 D14874 NM_001124	-13184	+	TSC_hg19_v1_chr11_-_10315755 BC101466 AY234241 NM_030962	-24047	-	AK098060 TSC_hg19_v1_chr11_+_9779882	-559951	+	AK295046 NM_001172431	132054	+	NM_000480 BC126118 TSC_hg19_v1_chr11_+_10472246 AK311436 M84720 AK289998 AK294444 AK313039 HQ258646	132582	+	NM_001025389 D12775 AK308181 M84721 AK299113 TSC_hg19_v1_chr11_+_10476953	137006	+	AK312893|ADM|133|adrenomedullin##BC015961|ADM|133|adrenomedullin##D14874|ADM|133|adrenomedullin##NM_001124|ADM|133|adrenomedullin##BC101466|SBF2|81846|SET binding factor 2##AY234241|SBF2|81846|SET binding factor 2##NM_030962|SBF2|81846|SET binding factor 2##AK098060|LOC283104|283104|uncharacterized LOC283104##AK295046|AMPD3|272|adenosine monophosphate deaminase 3##NM_001172431|AMPD3|272|adenosine monophosphate deaminase 3##NM_000480|AMPD3|272|adenosine monophosphate deaminase 3##BC126118|AMPD3|272|adenosine monophosphate deaminase 3##AK311436|AMPD3|272|adenosine monophosphate deaminase 3##M84720|AMPD3|272|adenosine monophosphate deaminase 3##AK289998|AMPD3|272|adenosine monophosphate deaminase 3##AK294444|AMPD3|272|adenosine monophosphate deaminase 3##AK313039|AMPD3|272|adenosine monophosphate deaminase 3##HQ258646|AMPD3|272|adenosine monophosphate deaminase 3##NM_001025389|AMPD3|272|adenosine monophosphate deaminase 3##D12775|AMPD3|272|adenosine monophosphate deaminase 3##AK308181|AMPD3|272|adenosine monophosphate deaminase 3##M84721|AMPD3|272|adenosine monophosphate deaminase 3##AK299113|AMPD3|272|adenosine monophosphate deaminase 3	0.992358	0.0	denovo_WM_7:-11:0.496	denovo_WM_7:-12:0.496
chr8	107670948	107671104	reg1004286.p1	8.371	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	-911	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	-1038	+	AK296561 NM_001198532	-210875	+	AK303695 NM_001198534 NM_001198535 AB075503 AK302844 AK316153 FN650109	67329	+	AF503617 AB463396 AM393063 BC105103 BC105105 AL833422 AL832152 NM_139166 AK092694 AX747674	111418	-	U83508 BC152411 BC152419 D13628 AY055342 NM_001146 NM_001199859 BX648814	839162	-	AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##AK303695|OXR1|55074|oxidation resistance 1##NM_001198534|OXR1|55074|oxidation resistance 1##NM_001198535|OXR1|55074|oxidation resistance 1##AB075503|OXR1|55074|oxidation resistance 1##AK302844|OXR1|55074|oxidation resistance 1##AK316153|OXR1|55074|oxidation resistance 1##FN650109|OXR1|55074|oxidation resistance 1##AF503617|ABRA|137735|actin-binding Rho activating protein##AM393063|ABRA|137735|actin-binding Rho activating protein##BC105103|ABRA|137735|actin-binding Rho activating protein##BC105105|ABRA|137735|actin-binding Rho activating protein##AL833422|ABRA|137735|actin-binding Rho activating protein##AL832152|ABRA|137735|actin-binding Rho activating protein##NM_139166|ABRA|137735|actin-binding Rho activating protein##AK092694|ABRA|137735|actin-binding Rho activating protein##U83508|ANGPT1|284|angiopoietin 1##BC152411|ANGPT1|284|angiopoietin 1##BC152419|ANGPT1|284|angiopoietin 1##D13628|ANGPT1|284|angiopoietin 1##AY055342|ANGPT1|284|angiopoietin 1##NM_001146|ANGPT1|284|angiopoietin 1##NM_001199859|ANGPT1|284|angiopoietin 1##BX648814|ANGPT1|284|angiopoietin 1	0.0	0.0	
chrX	96589971	96590135	reg1004038.p2	8.371	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	-451083	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	-650099	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	-650302	+	EF676096 NM_001105243 NM_001184880 NM_020766 TSC_hg19_v1_chrX_-_99665272	3075220	-	NM_022144 AF191770 BC034030 AF291656 AF234259 AY358706 AB055421 AB590911 CU689814	3249848	+	BT006977 CR457115 AB527646 DQ890668 DQ893849 TSC_hg19_v1_chrX_-_99891804 AF053453 AK299176 AF133426 AK309581 AY358825 AB097016 AF043906 U84895 BC012389 NM_003270 AK075072 AB209876 AK315773 AK300852	3301715	-	NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa##BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##EF676096|PCDH19|57526|protocadherin 19##NM_001105243|PCDH19|57526|protocadherin 19##NM_001184880|PCDH19|57526|protocadherin 19##NM_020766|PCDH19|57526|protocadherin 19##NM_022144|TNMD|64102|tenomodulin##AF191770|TNMD|64102|tenomodulin##BC034030|TNMD|64102|tenomodulin##AF291656|TNMD|64102|tenomodulin##AF234259|TNMD|64102|tenomodulin##AY358706|TNMD|64102|tenomodulin##AB055421|TNMD|64102|tenomodulin##BT006977|TSPAN6|7105|tetraspanin 6##CR457115|TSPAN6|7105|tetraspanin 6##DQ890668|TSPAN6|7105|tetraspanin 6##DQ893849|TSPAN6|7105|tetraspanin 6##AF053453|TSPAN6|7105|tetraspanin 6##AK299176|TSPAN6|7105|tetraspanin 6##AF133426|TSPAN6|7105|tetraspanin 6##AK309581|TSPAN6|7105|tetraspanin 6##AY358825|TSPAN6|7105|tetraspanin 6##AB097016|TSPAN6|7105|tetraspanin 6##AF043906|TSPAN6|7105|tetraspanin 6##U84895|TSPAN6|7105|tetraspanin 6##BC012389|TSPAN6|7105|tetraspanin 6##NM_003270|TSPAN6|7105|tetraspanin 6##AK075072|TSPAN6|7105|tetraspanin 6##AB209876|TSPAN6|7105|tetraspanin 6##AK315773|TSPAN6|7105|tetraspanin 6##AK300852|TSPAN6|7105|tetraspanin 6	1.783781	0.0	denovo_WM_7:-44:0.235	denovo_WM_7:-45:0.235	denovo_WM_7:-46:0.235	denovo_WM_7:-47:0.234	denovo_WM_7:-65:0.650
chrX	130036723	130036882	reg1003506.p2	8.369	+	TSC_hg19_v1_chrX_+_129535955 BC003676 NM_016024 AK292855 BC105582 BC012345 AL050405 BC033750 BC063517 BC010036 BC040433 BC050707	-500849	+	AY288416 BC101166 BC101167 BC101168 AB529244 HQ258187 BC095502 BC126179 BC126181 NM_178471	-517337	-	TSC_hg19_v1_chrX_+_129473927 AK304649 AK297499 AK309433 AK296155 NM_003951 NM_022810 BC119666 BC119667 AF155809 AF155810 AF155811 AY358099	-562770	+	TSC_hg19_v1_chrX_-_130037184 BC108713 AL133207 AK289812 AK289837	375	-	TSC_hg19_v1_chrX_-_130037207 AK000353 NM_006375 NM_182314	404	-	AK128203 NM_144967 AK296748 AX721074	155470	+	BC003676|RBMX2|51634|RNA binding motif protein, X-linked 2##NM_016024|RBMX2|51634|RNA binding motif protein, X-linked 2##AK292855|RBMX2|51634|RNA binding motif protein, X-linked 2##BC105582|RBMX2|51634|RNA binding motif protein, X-linked 2##BC012345|RBMX2|51634|RNA binding motif protein, X-linked 2##AL050405|RBMX2|51634|RNA binding motif protein, X-linked 2##BC033750|RBMX2|51634|RNA binding motif protein, X-linked 2##BC063517|RBMX2|51634|RNA binding motif protein, X-linked 2##BC010036|RBMX2|51634|RNA binding motif protein, X-linked 2##BC040433|RBMX2|51634|RNA binding motif protein, X-linked 2##BC050707|RBMX2|51634|RNA binding motif protein, X-linked 2##AY288416|GPR119|139760|G protein-coupled receptor 119##BC101166|GPR119|139760|G protein-coupled receptor 119##BC101167|GPR119|139760|G protein-coupled receptor 119##BC101168|GPR119|139760|G protein-coupled receptor 119##HQ258187|GPR119|139760|G protein-coupled receptor 119##BC095502|GPR119|139760|G protein-coupled receptor 119##BC126179|GPR119|139760|G protein-coupled receptor 119##BC126181|GPR119|139760|G protein-coupled receptor 119##NM_178471|GPR119|139760|G protein-coupled receptor 119##AK297499|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK309433|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK296155|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_003951|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_022810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119666|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119667|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155809|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155811|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY358099|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC108713|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AL133207|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289812|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289837|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK000353|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_006375|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_182314|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK128203|ARHGAP36|158763|Rho GTPase activating protein 36##NM_144967|ARHGAP36|158763|Rho GTPase activating protein 36##AK296748|ARHGAP36|158763|Rho GTPase activating protein 36	1.648345	0.0	denovo_WM_7:-1:0.237	denovo_WM_7:-2:0.237	denovo_WM_7:-3:0.237	denovo_WM_7:-4:0.237	denovo_WM_7:-36:0.208	denovo_WM_7:-37:0.416
chr18	29136001	29136150	reg1003566.p1	8.368	+	NM_001943 TSC_hg19_v1_chr18_+_29078205 BC099655 BC099656 BC099657 Z26317 AK308408	-57932	+	AK290367 NM_001944 M76482	-108331	+	AY177664 NM_001134453 NM_177986 AY168788 AY228236 BC132907 BC132909 AY227350	-179269	+	NM_000371 TSC_hg19_v1_chr18_+_29171839 AK312051 BC005310 BC020791 D00096 GU727633 K02091 M10605 X59498 AF162690 BT007189 CR456908 DQ778081 DQ839490 U19780	35722	+	AB024742 BC074835 BC074884 BC069620 BC069642 AF069054 AK314860 AF097159 NM_004775	128464	-	BC103999 BC104000 BC104001 AK302337 NM_001034172	204695	-	NM_001943|DSG2|1829|desmoglein 2##BC099655|DSG2|1829|desmoglein 2##BC099656|DSG2|1829|desmoglein 2##BC099657|DSG2|1829|desmoglein 2##Z26317|DSG2|1829|desmoglein 2##AK308408|DSG2|1829|desmoglein 2##AK290367|DSG3|1830|desmoglein 3##NM_001944|DSG3|1830|desmoglein 3##M76482|DSG3|1830|desmoglein 3##AY177664|DSG4|147409|desmoglein 4##NM_001134453|DSG4|147409|desmoglein 4##NM_177986|DSG4|147409|desmoglein 4##AY168788|DSG4|147409|desmoglein 4##AY228236|DSG4|147409|desmoglein 4##BC132907|DSG4|147409|desmoglein 4##BC132909|DSG4|147409|desmoglein 4##AY227350|DSG4|147409|desmoglein 4##NM_000371|TTR|7276|transthyretin##AK312051|TTR|7276|transthyretin##BC005310|TTR|7276|transthyretin##BC020791|TTR|7276|transthyretin##D00096|TTR|7276|transthyretin##GU727633|TTR|7276|transthyretin##K02091|TTR|7276|transthyretin##M10605|TTR|7276|transthyretin##X59498|TTR|7276|transthyretin##AF162690|TTR|7276|transthyretin##BT007189|TTR|7276|transthyretin##CR456908|TTR|7276|transthyretin##DQ839490|TTR|7276|transthyretin##U19780|TTR|7276|transthyretin##AB024742|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC074835|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC074884|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC069620|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC069642|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AF069054|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AK314860|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AF097159|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##NM_004775|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC103999|MCART2|147407|mitochondrial carrier triple repeat 2##BC104000|MCART2|147407|mitochondrial carrier triple repeat 2##BC104001|MCART2|147407|mitochondrial carrier triple repeat 2##AK302337|MCART2|147407|mitochondrial carrier triple repeat 2##NM_001034172|MCART2|147407|mitochondrial carrier triple repeat 2	0.989543	0.999182	denovo_WM_7:22:0.784	CTCF.p2:-37:0.999
chr1	45788500	45788608	reg1003386.p1	8.367	+	TSC_hg19_v1_chr1_+_45769564 BC035497	-18979	+	TSC_hg19_v1_chr1_-_45672278 AB040944 NM_020883	-116303	-	TSC_hg19_v1_chr1_+_45478442 AK293702	-310103	+	NM_032756 BC007293	4006	+	AY169960 NM_025077 TSC_hg19_v1_chr1_+_45805393	16831	+	TSC_hg19_v1_chr1_+_45805740 AK293704	17166	+	BC035497|LOC400752|400752|uncharacterized LOC400752##AB040944|ZSWIM5|57643|zinc finger, SWIM-type containing 5##NM_020883|ZSWIM5|57643|zinc finger, SWIM-type containing 5##AK293702|UROD|7389|uroporphyrinogen decarboxylase##NM_032756|HPDL|84842|4-hydroxyphenylpyruvate dioxygenase-like##BC007293|HPDL|84842|4-hydroxyphenylpyruvate dioxygenase-like##AY169960|TOE1|114034|target of EGR1, member 1 (nuclear)##NM_025077|TOE1|114034|target of EGR1, member 1 (nuclear)##AK293704|TOE1|114034|target of EGR1, member 1 (nuclear)	0.993766	0.0	
chr14	89928929	89929052	reg1003960.p1	8.366	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-45580	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-50214	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-637997	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	156605	-	BC001787 BX247991 AK298930 AK094740 NM_145231	492070	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	493256	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.994087	0.0	denovo_WM_7:49:0.814
chr1	9244178	9244284	reg1002740.p1	8.366	+	DQ892804 DQ896051 TSC_hg19_v1_chr1_-_9189169 AK022194 AK292888 AK304154 AY768808 NM_024980 BC094733 BC018691	-55010	-	TSC_hg19_v1_chr1_-_9129695 M55531 AK290398 AK294368 NM_001135585 NM_003039	-114455	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	-114590	-	TSC_hg19_v1_chr1_+_9294832 BC081559	50584	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	50686	+	CR749282 TSC_hg19_v1_chr1_+_9299950	55707	+	DQ892804|GPR157|80045|G protein-coupled receptor 157##DQ896051|GPR157|80045|G protein-coupled receptor 157##AK022194|GPR157|80045|G protein-coupled receptor 157##AK292888|GPR157|80045|G protein-coupled receptor 157##AK304154|GPR157|80045|G protein-coupled receptor 157##AY768808|GPR157|80045|G protein-coupled receptor 157##NM_024980|GPR157|80045|G protein-coupled receptor 157##BC018691|GPR157|80045|G protein-coupled receptor 157##M55531|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK290398|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK294368|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_001135585|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_003039|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	0.996938	0.0	denovo_WM_7:34:0.207	denovo_WM_7:35:0.385	denovo_WM_7:36:0.380
chr7	120468652	120468819	reg1002977.p2	8.366	+	AK307139 AB028967 NM_012281	-555031	+	NM_019644 AK302407	-2604001	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-2644564	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	29285	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	29425	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	122146	+	AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3	1.063391	0.0	
chr4	25906117	25906277	reg1003475.p1	8.365	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-41643	-	NM_001177999 AK314514	-248107	+	NM_001177998 NM_006424 AK292675 AF111856 AK075046 TSC_hg19_v1_chr4_+_25657473 AF146796 BC142704 BC146666	-248737	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	9667	+	L07875 BC020780 NM_005349 NM_203283	415122	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	416112	+	BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001177998|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_006424|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK292675|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF111856|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK075046|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF146796|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC142704|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC146666|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.99727	0.0	denovo_WM_7:9:0.493	denovo_WM_7:10:0.493
chr7	101335207	101335372	reg1004281.p1	8.364	+	BC002778 NM_138403	-62714	-	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-329072	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-370251	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	123920	+	M74099 NM_181552	125592	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	593108	+	BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_020979|SH2B2|10603|SH2B adaptor protein 2	1.883655	0.0	denovo_WM_7:-44:0.223	denovo_WM_7:-46:0.680	denovo_WM_7:-60:0.244	denovo_WM_7:-61:0.663
chr3	58024677	58024846	reg1003205.p1	8.361	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	-30614	+	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	-281559	+	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	-346022	-	NM_004944	175636	-	TSC_hg19_v1_chr3_+_58223264 NM_020676 AK225942 AK172797 AK313168	198522	+	TSC_hg19_v1_chr3_+_58223518 AF225418 AK122983 BC001698	198769	+	AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##NM_004944|DNASE1L3|1776|deoxyribonuclease I-like 3##NM_020676|ABHD6|57406|abhydrolase domain containing 6##AK225942|ABHD6|57406|abhydrolase domain containing 6##AK172797|ABHD6|57406|abhydrolase domain containing 6##AK313168|ABHD6|57406|abhydrolase domain containing 6##AF225418|ABHD6|57406|abhydrolase domain containing 6##AK122983|ABHD6|57406|abhydrolase domain containing 6##BC001698|ABHD6|57406|abhydrolase domain containing 6	1.00799	0.0	denovo_WM_7:-1:0.293	denovo_WM_7:-2:0.296	denovo_WM_7:-3:0.304
chr16	71852244	71852344	reg1002222.p2	8.360	+	TSC_hg19_v1_chr16_-_71842963 BC036283 AK128078 NM_001030007 NM_001128 AK314484	-9316	-	TSC_hg19_v1_chr16_-_71842738 AK293233 AK225906 AK294546 AK299630	-9541	-	TSC_hg19_v1_chr16_-_71842690 AB015317 Y12226	-9660	-	TSC_hg19_v1_chr16_+_71879878 AB621810	27581	+	TSC_hg19_v1_chr16_+_71879908 NM_001137675	27627	+	AF070588 AK296603 NM_001201553 NM_017530	65133	-	BC036283|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK128078|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001030007|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001128|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK314484|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK293233|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK225906|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK294546|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK299630|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AB015317|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##Y12226|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001137675|ATXN1L|342371|ataxin 1-like##AF070588|ZNF821|55565|zinc finger protein 821##AK296603|ZNF821|55565|zinc finger protein 821##NM_001201553|ZNF821|55565|zinc finger protein 821##NM_017530|ZNF821|55565|zinc finger protein 821	1.395903	0.0	denovo_WM_7:2:0.276	denovo_WM_7:18:0.281
chr1	11025804	11025984	reg1003980.p2	8.359	+	DQ217660 AK092289 AX747454 NM_001079843 NM_017766	-169189	-	TSC_hg19_v1_chr1_-_10754567 AK311700 AK293839	-271343	-	TSC_hg19_v1_chr1_+_10535017 AK293684 AK307416 NM_004565 AK298136 AK002194 BC006327 AK310726 BC017848 BC054017 AB017546 AF045186 AK313046 AB527589 CR450321 CR542083 CU675355 DQ892775 DQ895905	-490883	+	NM_001170754	16199	-	NM_007375 TSC_hg19_v1_chr1_+_11072715 AK299454 AK312416 BC001487 BC095435 BC071657 AL050265 AK222754 AK295920	46816	+	Y18282 TSC_hg19_v1_chr1_-_11107270 Y18283 X98400 Y09926 BC052299 BC067359 BC080556 Y18281 Y18284 AB008047	81325	-	DQ217660|CASZ1|54897|castor zinc finger 1##AK092289|CASZ1|54897|castor zinc finger 1##NM_001079843|CASZ1|54897|castor zinc finger 1##NM_017766|CASZ1|54897|castor zinc finger 1##AK311700|CASZ1|54897|castor zinc finger 1##AK293839|CASZ1|54897|castor zinc finger 1##AK293684|PEX14|5195|peroxisomal biogenesis factor 14##AK307416|PEX14|5195|peroxisomal biogenesis factor 14##NM_004565|PEX14|5195|peroxisomal biogenesis factor 14##AK298136|PEX14|5195|peroxisomal biogenesis factor 14##AK002194|PEX14|5195|peroxisomal biogenesis factor 14##BC006327|PEX14|5195|peroxisomal biogenesis factor 14##AK310726|PEX14|5195|peroxisomal biogenesis factor 14##BC017848|PEX14|5195|peroxisomal biogenesis factor 14##BC054017|PEX14|5195|peroxisomal biogenesis factor 14##AB017546|PEX14|5195|peroxisomal biogenesis factor 14##AF045186|PEX14|5195|peroxisomal biogenesis factor 14##AK313046|PEX14|5195|peroxisomal biogenesis factor 14##CR450321|PEX14|5195|peroxisomal biogenesis factor 14##CR542083|PEX14|5195|peroxisomal biogenesis factor 14##DQ892775|PEX14|5195|peroxisomal biogenesis factor 14##DQ895905|PEX14|5195|peroxisomal biogenesis factor 14##NM_001170754|C1orf127|148345|chromosome 1 open reading frame 127##NM_007375|TARDBP|23435|TAR DNA binding protein##AK299454|TARDBP|23435|TAR DNA binding protein##AK312416|TARDBP|23435|TAR DNA binding protein##BC001487|TARDBP|23435|TAR DNA binding protein##BC095435|TARDBP|23435|TAR DNA binding protein##BC071657|TARDBP|23435|TAR DNA binding protein##AL050265|TARDBP|23435|TAR DNA binding protein##AK222754|TARDBP|23435|TAR DNA binding protein##AK295920|TARDBP|23435|TAR DNA binding protein##Y18282|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18283|MASP2|10747|mannan-binding lectin serine peptidase 2##X98400|MASP2|10747|mannan-binding lectin serine peptidase 2##Y09926|MASP2|10747|mannan-binding lectin serine peptidase 2##BC052299|MASP2|10747|mannan-binding lectin serine peptidase 2##BC067359|MASP2|10747|mannan-binding lectin serine peptidase 2##BC080556|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18281|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18284|MASP2|10747|mannan-binding lectin serine peptidase 2##AB008047|MASP2|10747|mannan-binding lectin serine peptidase 2	1.039375	0.0	denovo_WM_7:-7:0.455	denovo_WM_7:-8:0.455
chr22	21316322	21316432	reg1002874.p2	8.359	+	TSC_hg19_v1_chr22_+_21271940 CR456423	-44374	+	TSC_hg19_v1_chr22_+_21271756 BC043500	-44546	+	BC026248 TSC_hg19_v1_chr22_+_21271721	-44656	+	NM_001018060 NM_144704 AK055035 TSC_hg19_v1_chr22_+_21319447 BC032485	3058	+	NM_001146288 AK094844 TSC_hg19_v1_chr22_+_21321550 AK295581 AK316042	5122	+	AY927574 TSC_hg19_v1_chr22_+_21330441	14027	+	CR456423|CRKL|1399|v-crk sarcoma virus CT10 oncogene homolog (avian)-like##BC043500|CRKL|1399|v-crk sarcoma virus CT10 oncogene homolog (avian)-like##BC026248|CRKL|1399|v-crk sarcoma virus CT10 oncogene homolog (avian)-like##NM_001018060|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##NM_144704|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK055035|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##BC032485|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##NM_001146288|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK094844|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK295581|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK316042|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AY927574|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3	0.99614	0.0	denovo_WM_7:35:0.661	denovo_WM_7:36:0.247
chr7	134855987	134856116	reg1003044.p2	8.358	+	TSC_hg19_v1_chr7_-_134855533 NM_001243749 NM_001243751 NM_001243754 NM_024033	-497	-	TSC_hg19_v1_chr7_-_134855449 AK026103 BC000168 BC050676 BC067350	-632	-	TSC_hg19_v1_chr7_-_134855252 NM_001243752	-784	-	AL136940 TSC_hg19_v1_chr7_-_134896200	40143	-	BC063394 AB527237 AM393209 CU677881 BC017246 TSC_hg19_v1_chr7_-_134896256	40202	-	TSC_hg19_v1_chr7_-_134896267 AF161534 AK022935	40211	-	NM_001243749|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243751|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243754|C7orf49|78996|chromosome 7 open reading frame 49##NM_024033|C7orf49|78996|chromosome 7 open reading frame 49##AK026103|C7orf49|78996|chromosome 7 open reading frame 49##BC000168|C7orf49|78996|chromosome 7 open reading frame 49##BC067350|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243752|C7orf49|78996|chromosome 7 open reading frame 49##AL136940|WDR91|29062|WD repeat domain 91##BC063394|WDR91|29062|WD repeat domain 91##AM393209|WDR91|29062|WD repeat domain 91##BC017246|WDR91|29062|WD repeat domain 91##AF161534|WDR91|29062|WD repeat domain 91##AK022935|WDR91|29062|WD repeat domain 91	1.564356	0.0	denovo_WM_7:17:0.325	denovo_WM_7:18:0.325	denovo_WM_7:19:0.318	denovo_WM_7:34:0.562
chr10	11251485	11251665	reg1002885.p1	8.357	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-44083	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-44129	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-44150	+	NM_001080491	322698	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	402061	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	532823	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	0.999686	0.0	denovo_WM_7:-35:0.419	denovo_WM_7:-36:0.419
chr12	12870161	12870341	reg1002257.p3	8.356	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-125	+	AK096388 NM_006143	-21131	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-105368	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	8605	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	68326	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	96039	+	AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	0.0	0.0	
chr15	48937920	48938019	reg1002836.p1	8.355	+	TSC_hg19_v1_chr15_-_48937907 BC146854 AK304737 BC094721 NM_000138 X63556	-40	-	TSC_hg19_v1_chr15_-_48937070 L13923	-886	-	TSC_hg19_v1_chr15_+_48624363 AK291515 NM_001948 AK312122 U31930 U62891 L11877 AB049113 M89913 DQ891191 DQ894375 CR541720 CR541781	-313568	+	BC117182 TSC_hg19_v1_chr15_-_49103277 AB020719 BC069186 AK303805 BX648822 BC107721 NM_001194998 NM_014985	165293	-	TSC_hg19_v1_chr15_+_49170330 NM_014335 BC114944 BC114946 AK315365 AF092135 AF109873 AF349444 AK098383 AL109701 BC024151 AL357456 BC007944 AB527924 AF274951	232403	+	BC033907 NM_203349	317671	-	BC146854|FBN1|2200|fibrillin 1##AK304737|FBN1|2200|fibrillin 1##BC094721|FBN1|2200|fibrillin 1##NM_000138|FBN1|2200|fibrillin 1##X63556|FBN1|2200|fibrillin 1##L13923|FBN1|2200|fibrillin 1##AK291515|DUT|1854|deoxyuridine triphosphatase##NM_001948|DUT|1854|deoxyuridine triphosphatase##AK312122|DUT|1854|deoxyuridine triphosphatase##U31930|DUT|1854|deoxyuridine triphosphatase##U62891|DUT|1854|deoxyuridine triphosphatase##L11877|DUT|1854|deoxyuridine triphosphatase##AB049113|DUT|1854|deoxyuridine triphosphatase##M89913|DUT|1854|deoxyuridine triphosphatase##DQ891191|DUT|1854|deoxyuridine triphosphatase##DQ894375|DUT|1854|deoxyuridine triphosphatase##CR541720|DUT|1854|deoxyuridine triphosphatase##CR541781|DUT|1854|deoxyuridine triphosphatase##BC117182|CEP152|22995|centrosomal protein 152kDa##AB020719|CEP152|22995|centrosomal protein 152kDa##BC069186|CEP152|22995|centrosomal protein 152kDa##AK303805|CEP152|22995|centrosomal protein 152kDa##BX648822|CEP152|22995|centrosomal protein 152kDa##BC107721|CEP152|22995|centrosomal protein 152kDa##NM_001194998|CEP152|22995|centrosomal protein 152kDa##NM_014985|CEP152|22995|centrosomal protein 152kDa##NM_014335|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114946|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK315365|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF092135|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF109873|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF349444|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK098383|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL109701|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC024151|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL357456|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC007944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC033907|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##NM_203349|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4	0.931566	0.0	denovo_WM_7:31:0.458	denovo_WM_7:37:0.367
chr10	11752858	11752987	reg1002013.p1	8.354	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	-99286	-	NM_001080491	-178649	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-545430	+	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	31476	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	112436	+	AK056703 TSC_hg19_v1_chr10_-_11936707	183780	-	AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47##AK056703|LOC219731|219731|uncharacterized LOC219731	0.0	0.0	
chr1	162331572	162331726	reg1004532.p1	8.354	+	TSC_hg19_v1_chr1_+_162039485 BC041382 AB007933 NM_001164757 NM_014697	-292125	+	AK316154 BC067274 NM_015441 TSC_hg19_v1_chr1_-_161993687	-338013	-	TSC_hg19_v1_chr1_+_161736145 BC014969 BC071997 AB208929 CU677145	-595513	+	AY841899 NM_001126060	1123	+	AB463503 CU689584 AY248900 BC032957 NM_182581	14962	-	AK293907 NM_001135240	17046	+	BC041382|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##AB007933|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##NM_001164757|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##NM_014697|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##AK316154|OLFML2B|25903|olfactomedin-like 2B##BC067274|OLFML2B|25903|olfactomedin-like 2B##NM_015441|OLFML2B|25903|olfactomedin-like 2B##BC014969|ATF6|22926|activating transcription factor 6##BC071997|ATF6|22926|activating transcription factor 6##AB208929|ATF6|22926|activating transcription factor 6##AY841899|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##NM_001126060|NOS1AP|9722|nitric oxide synthase 1 (neuronal) adaptor protein##AY248900|C1orf111|284680|chromosome 1 open reading frame 111##BC032957|C1orf111|284680|chromosome 1 open reading frame 111##NM_182581|C1orf111|284680|chromosome 1 open reading frame 111##AK293907|C1orf226|400793|chromosome 1 open reading frame 226##NM_001135240|C1orf226|400793|chromosome 1 open reading frame 226	0.0	0.0	
chrX	9612601	9612764	reg1003232.p2	8.352	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	-179448	+	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	-181335	+	BC120955 BC120956 NM_205849	-611580	-	Z48804 BC015657 BC068977 NM_000273	121278	-	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	141798	+	BC140866 TSC_hg19_v1_chrX_+_9754543	141861	+	Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##BC140866|SHROOM2|357|shroom family member 2	1.795814	0.0	denovo_WM_7:9:0.561	denovo_WM_7:25:0.737
chr14	68973562	68973696	reg1003708.p1	8.351	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-687109	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-690330	-	AK315462 NM_152443	-805027	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	286091	-	NM_001244698 NM_004926	287001	-	NM_001244701 AB528867	289355	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr14	69208671	69208800	reg1003547.p2	8.350	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-922215	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-925436	-	AK315462 NM_152443	-1040133	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	50985	-	NM_001244698 NM_004926	51895	-	NM_001244701 AB528867	54249	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr22	41874672	41874852	reg1003646.p3	8.350	+	TSC_hg19_v1_chr22_+_41865120 AK293562 AK297213 AK301321 AK314845 AK302691 AK296260 BC026196 BC014092 NM_001098 U80040 CR456365 AB385022 CR536568 CU012932 CU013220 DQ893674 DQ895836	-9631	+	AB489147 CU012956 CU013244 EU446678 TSC_hg19_v1_chr22_-_41864681 BC075808 CR456398 BC007321 NM_032758	-10078	-	TSC_hg19_v1_chr22_-_41842881 NM_016272	-31823	-	TSC_hg19_v1_chr22_-_41940381 AB051452 BC088367 BC017248	65591	-	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	65738	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	82307	+	AK293562|ACO2|50|aconitase 2, mitochondrial##AK297213|ACO2|50|aconitase 2, mitochondrial##AK301321|ACO2|50|aconitase 2, mitochondrial##AK314845|ACO2|50|aconitase 2, mitochondrial##AK302691|ACO2|50|aconitase 2, mitochondrial##AK296260|ACO2|50|aconitase 2, mitochondrial##BC026196|ACO2|50|aconitase 2, mitochondrial##BC014092|ACO2|50|aconitase 2, mitochondrial##NM_001098|ACO2|50|aconitase 2, mitochondrial##U80040|ACO2|50|aconitase 2, mitochondrial##CR456365|ACO2|50|aconitase 2, mitochondrial##CR536568|ACO2|50|aconitase 2, mitochondrial##CU012932|ACO2|50|aconitase 2, mitochondrial##CU013220|ACO2|50|aconitase 2, mitochondrial##DQ893674|ACO2|50|aconitase 2, mitochondrial##DQ895836|ACO2|50|aconitase 2, mitochondrial##CU012956|PHF5A|84844|PHD finger protein 5A##CU013244|PHF5A|84844|PHD finger protein 5A##EU446678|PHF5A|84844|PHD finger protein 5A##BC075808|PHF5A|84844|PHD finger protein 5A##CR456398|PHF5A|84844|PHD finger protein 5A##BC007321|PHF5A|84844|PHD finger protein 5A##NM_032758|PHF5A|84844|PHD finger protein 5A##NM_016272|TOB2|10766|transducer of ERBB2, 2##AB051452|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC088367|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC017248|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding	0.993074	0.0	
chr2	34905076	34905256	reg1003842.p1	8.350	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	-1080821	-	AB020653 NM_015376	-1166225	+	TSC_hg19_v1_chr2_+_33701715 BX647990	-1203470	+	TSC_hg19_v1_chr2_+_36582920 AY358371	1677796	+	AB209139 NM_016441 AF167706 BC111989 BC113371 AB384861	1678236	+	AF113124 BC064484 BC054043 BC089390 BC047020 BC110386 TSC_hg19_v1_chr2_-_36825294 BC037566 BC018032 AB076184 NM_001042548 NM_005102	1920116	-	BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AB209139|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##NM_016441|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF167706|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC111989|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC113371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF113124|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC064484|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC054043|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC089390|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC047020|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC110386|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC037566|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC018032|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##AB076184|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_001042548|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_005102|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)	0.98073	0.0	denovo_WM_7:-1:0.620	denovo_WM_7:-2:0.361
chr6	8183781	8183926	reg1000764.p2	8.350	+	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-81063	-	TSC_hg19_v1_chr6_-_8064644 AK301142 AF426434 NM_001199322 NM_001199323 NM_201280	-119193	-	TSC_hg19_v1_chr6_-_8064623 BC052310 AK025442 BC032438 CR749569 BX647336 BC119645 BC119644	-119252	-	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	251855	-	TSC_hg19_v1_chr6_+_8435870 BC040612	252035	+	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	2228763	-	AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AK301142|MUTED|63915|muted homolog (mouse)##AF426434|MUTED|63915|muted homolog (mouse)##NM_001199322|MUTED|63915|muted homolog (mouse)##NM_001199323|MUTED|63915|muted homolog (mouse)##NM_201280|MUTED|63915|muted homolog (mouse)##BC052310|MUTED-TXNDC5|100526836|MUTED-TXNDC5 readthrough (non-protein coding)##AK025442|MUTED|63915|muted homolog (mouse)##BC032438|MUTED|63915|muted homolog (mouse)##CR749569|MUTED|63915|muted homolog (mouse)##BX647336|MUTED|63915|muted homolog (mouse)##BC119645|MUTED|63915|muted homolog (mouse)##BC119644|MUTED|63915|muted homolog (mouse)##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.0	0.0	
chr11	128826234	128826414	reg1001449.p1	8.349	+	NM_001195195 NM_001251964 NM_022112	-13031	-	AB527772 AY302135 NM_001195194 BC069399 BC069426	-18574	-	AK125634 TSC_hg19_v1_chr11_-_128776110	-50210	-	AB018255 AY194287 TSC_hg19_v1_chr11_-_128894084 AB079856 NM_014715	67737	-	EF127492 NM_001142685	235768	-	AF031924 BC069378 NM_003658 BC111432 BC111572 AJ243512 AB527829	419557	+	NM_001195195|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_001251964|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_022112|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##AY302135|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_001195194|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##BC069399|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##BC069426|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##AK125634|C11orf45|219833|chromosome 11 open reading frame 45##AB018255|ARHGAP32|9743|Rho GTPase activating protein 32##AY194287|ARHGAP32|9743|Rho GTPase activating protein 32##AB079856|ARHGAP32|9743|Rho GTPase activating protein 32##NM_014715|ARHGAP32|9743|Rho GTPase activating protein 32##EF127492|ARHGAP32|9743|Rho GTPase activating protein 32##NM_001142685|ARHGAP32|9743|Rho GTPase activating protein 32##AF031924|BARX2|8538|BARX homeobox 2##BC069378|BARX2|8538|BARX homeobox 2##NM_003658|BARX2|8538|BARX homeobox 2##BC111432|BARX2|8538|BARX homeobox 2##BC111572|BARX2|8538|BARX homeobox 2##AJ243512|BARX2|8538|BARX homeobox 2	1.998236	0.0	denovo_WM_7:0:0.366	denovo_WM_7:-1:0.274	denovo_WM_7:-17:0.291	denovo_WM_7:-18:0.382
chr3	62052685	62052865	reg1002930.p1	8.347	+	AB055764 TSC_hg19_v1_chr3_-_61728812	-323964	-	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-504799	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-505489	+	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	251931	+	BC017772 NM_020685	252620	+	AK290464 NM_018008	306414	-	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14##AK290464|FEZF2|55079|FEZ family zinc finger 2##NM_018008|FEZF2|55079|FEZ family zinc finger 2	1.0521	0.0	
chr9	140429382	140429549	reg1003283.p1	8.346	+	AY255128 AY255129 AY255130 AY255131 AY255132 NM_001130969 NM_001130970 NM_001130971 NM_001178064 NM_015537 TSC_hg19_v1_chr9_-_140353787	-75663	-	TSC_hg19_v1_chr9_-_140353758 AK074602 BC072412	-75705	-	TSC_hg19_v1_chr9_-_140353612 BC110498	-75833	-	AK125060 AK126267 TSC_hg19_v1_chr9_-_140444881 NM_001098537 NM_152286	15445	-	NM_032477 TSC_hg19_v1_chr9_+_140446353 BC040035 AY232291	16894	+	CU675946 TSC_hg19_v1_chr9_-_140473350 AK307180 BC003123 BC016349 BC017335	43825	-	AY255128|NELF|26012|nasal embryonic LHRH factor##AY255129|NELF|26012|nasal embryonic LHRH factor##AY255130|NELF|26012|nasal embryonic LHRH factor##AY255131|NELF|26012|nasal embryonic LHRH factor##AY255132|NELF|26012|nasal embryonic LHRH factor##NM_001130969|NELF|26012|nasal embryonic LHRH factor##NM_001130970|NELF|26012|nasal embryonic LHRH factor##NM_001130971|NELF|26012|nasal embryonic LHRH factor##NM_001178064|NELF|26012|nasal embryonic LHRH factor##NM_015537|NELF|26012|nasal embryonic LHRH factor##AK074602|NELF|26012|nasal embryonic LHRH factor##BC072412|NELF|26012|nasal embryonic LHRH factor##BC110498|NELF|26012|nasal embryonic LHRH factor##AK125060|PNPLA7|375775|patatin-like phospholipase domain containing 7##AK126267|PNPLA7|375775|patatin-like phospholipase domain containing 7##NM_001098537|PNPLA7|375775|patatin-like phospholipase domain containing 7##NM_152286|PNPLA7|375775|patatin-like phospholipase domain containing 7##NM_032477|MRPL41|64975|mitochondrial ribosomal protein L41##BC040035|MRPL41|64975|mitochondrial ribosomal protein L41##AY232291|MRPL41|64975|mitochondrial ribosomal protein L41##AK307180|WDR85|92715|WD repeat domain 85##BC003123|WDR85|92715|WD repeat domain 85##BC016349|WDR85|92715|WD repeat domain 85##BC017335|WDR85|92715|WD repeat domain 85	0.0	0.010338	
chr12	93984577	93984757	reg1002986.p1	8.345	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-19066	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-19847	+	TSC_hg19_v1_chr12_-_93964654 AK123812	-20004	-	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	86516	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	557837	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	868864	-	AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41	1.995924	0.0	
chr10	97521845	97522025	reg1001975.p1	8.344	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-6395	+	AJ133133 AJ133134 NM_001098175	-50400	+	BC068449 DQ278872 NM_001143973 NM_015631	-68036	-	AK294399 NM_001130446	145786	+	NM_001001732 NM_001159747 AK302377 BC075861	237929	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	281446	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.990121	0.0	denovo_WM_7:39:0.237	denovo_WM_7:40:0.237	denovo_WM_7:41:0.237	denovo_WM_7:42:0.237
chr2	97322406	97322560	reg1004108.p1	8.343	+	AK126032 AY461813 NM_001113382	-13960	+	TSC_hg19_v1_chr2_-_97304084 AK023813 AY050169 AK304011 NM_001115016 NM_017991	-18385	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	-18416	-	BC000347 BC005822 BC005862 AB528167 AJ549957 AM392707 EU831637 EU831721 TSC_hg19_v1_chr2_-_97405791 BC067265 AY358929 AK222828 BX648002	83300	-	AK304515 AK075347 AK295463 AK299740 AK301077 AK308085 AK316331 AL136617 TSC_hg19_v1_chr2_-_97405802 AK312249 NM_001142292 NM_030805 AK310100	83330	-	TSC_hg19_v1_chr2_+_97426638 BC063295 NM_020184 AF202777 AB046812	104266	+	AK126032|FER1L5|90342|fer-1-like 5 (C. elegans)##AY461813|FER1L5|90342|fer-1-like 5 (C. elegans)##NM_001113382|FER1L5|90342|fer-1-like 5 (C. elegans)##AK023813|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AY050169|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK304011|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##NM_001115016|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##NM_017991|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC000347|LMAN2L|81562|lectin, mannose-binding 2-like##BC005822|LMAN2L|81562|lectin, mannose-binding 2-like##BC005862|LMAN2L|81562|lectin, mannose-binding 2-like##AJ549957|LMAN2L|81562|lectin, mannose-binding 2-like##AM392707|LMAN2L|81562|lectin, mannose-binding 2-like##EU831637|LMAN2L|81562|lectin, mannose-binding 2-like##EU831721|LMAN2L|81562|lectin, mannose-binding 2-like##BC067265|LMAN2L|81562|lectin, mannose-binding 2-like##AY358929|LMAN2L|81562|lectin, mannose-binding 2-like##AK222828|LMAN2L|81562|lectin, mannose-binding 2-like##BX648002|LMAN2L|81562|lectin, mannose-binding 2-like##AK304515|LMAN2L|81562|lectin, mannose-binding 2-like##AK075347|LMAN2L|81562|lectin, mannose-binding 2-like##AK295463|LMAN2L|81562|lectin, mannose-binding 2-like##AK299740|LMAN2L|81562|lectin, mannose-binding 2-like##AK301077|LMAN2L|81562|lectin, mannose-binding 2-like##AK308085|LMAN2L|81562|lectin, mannose-binding 2-like##AK316331|LMAN2L|81562|lectin, mannose-binding 2-like##AL136617|LMAN2L|81562|lectin, mannose-binding 2-like##AK312249|LMAN2L|81562|lectin, mannose-binding 2-like##NM_001142292|LMAN2L|81562|lectin, mannose-binding 2-like##NM_030805|LMAN2L|81562|lectin, mannose-binding 2-like##AK310100|LMAN2L|81562|lectin, mannose-binding 2-like##BC063295|CNNM4|26504|cyclin M4##NM_020184|CNNM4|26504|cyclin M4##AF202777|CNNM4|26504|cyclin M4##AB046812|CNNM4|26504|cyclin M4	1.798749	0.0	denovo_WM_7:10:0.419	denovo_WM_7:11:0.419	denovo_WM_7:-104:0.356
chr12	120639948	120640128	reg1001048.p2	8.342	+	AK001313 AK129823 M17885 TSC_hg19_v1_chr12_-_120638914 NM_001002 NM_053275	-1076	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	-1128	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	-1137	-	BX648777 NM_025157	47921	-	TSC_hg19_v1_chr12_-_120703534 AK299486 BC136787 BC136794 BC144410 U14588 AB209034 AK298057 AK314204	63476	-	TSC_hg19_v1_chr12_-_120703574 NM_001080855 NM_001243756 NM_002859	63552	-	AK001313|RPLP0|6175|ribosomal protein, large, P0##AK129823|RPLP0|6175|ribosomal protein, large, P0##M17885|RPLP0|6175|ribosomal protein, large, P0##NM_001002|RPLP0|6175|ribosomal protein, large, P0##NM_053275|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##BX648777|PXN|5829|paxillin##NM_025157|PXN|5829|paxillin##AK299486|PXN|5829|paxillin##BC136787|PXN|5829|paxillin##BC136794|PXN|5829|paxillin##BC144410|PXN|5829|paxillin##U14588|PXN|5829|paxillin##AB209034|PXN|5829|paxillin##AK298057|PXN|5829|paxillin##AK314204|PXN|5829|paxillin##NM_001080855|PXN|5829|paxillin##NM_001243756|PXN|5829|paxillin##NM_002859|PXN|5829|paxillin	0.998596	0.0	
chr6_dbb_hap3	4573451	4573606	reg1003818.p2	8.340	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.996311	0.0	denovo_WM_7:-25:0.252	denovo_WM_7:-28:0.504
chr10	6362374	6362534	reg1004454.p1	8.339	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-117578	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-175542	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-175570	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	259807	-	TSC_hg19_v1_chr10_+_6622460 AY007155	260026	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1088796	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.99303	0.0	denovo_WM_7:-24:0.455	denovo_WM_7:-26:0.421
chr16	67719742	67719853	reg1002891.p2	8.338	+	TSC_hg19_v1_chr16_+_67700716 NM_001012984 AK123796 BC032064 BC041612 BC064498 BC082249	-19076	+	TSC_hg19_v1_chr16_-_67700634 BC008284 AL136786 NM_032140	-19182	-	TSC_hg19_v1_chr16_+_67694862 NM_001037281 NM_016948 AB043634 BC015626 AF265565 AB041642 AJ277095 DQ893477 DQ896347 AB528401	-24922	+	TSC_hg19_v1_chr16_-_67753220 AK074382 BC107585 BC000757 AK307280 AK225997 NM_001243650 NM_030819	33432	-	TSC_hg19_v1_chr16_-_67840456 AB384605 AB040897 AK055727 AK298806 AK304030 BC099917 AK295171 AK295530	120607	-	TSC_hg19_v1_chr16_-_67840464 BC121176 BC121177 AY337313 NM_020850	120712	-	NM_001012984|C16orf86|388284|chromosome 16 open reading frame 86##AK123796|C16orf86|388284|chromosome 16 open reading frame 86##BC032064|C16orf86|388284|chromosome 16 open reading frame 86##BC041612|C16orf86|388284|chromosome 16 open reading frame 86##BC064498|C16orf86|388284|chromosome 16 open reading frame 86##BC082249|C16orf86|388284|chromosome 16 open reading frame 86##BC008284|C16orf48|84080|chromosome 16 open reading frame 48##AL136786|C16orf48|84080|chromosome 16 open reading frame 48##NM_032140|C16orf48|84080|chromosome 16 open reading frame 48##NM_001037281|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##NM_016948|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AB043634|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##BC015626|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AF265565|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AB041642|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AJ277095|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##DQ893477|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##DQ896347|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AK074382|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC107585|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC000757|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK307280|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK225997|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_001243650|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_030819|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AB040897|RANBP10|57610|RAN binding protein 10##AK055727|RANBP10|57610|RAN binding protein 10##AK298806|RANBP10|57610|RAN binding protein 10##AK304030|RANBP10|57610|RAN binding protein 10##BC099917|RANBP10|57610|RAN binding protein 10##AK295171|RANBP10|57610|RAN binding protein 10##AK295530|RANBP10|57610|RAN binding protein 10##BC121176|RANBP10|57610|RAN binding protein 10##BC121177|RANBP10|57610|RAN binding protein 10##AY337313|RANBP10|57610|RAN binding protein 10##NM_020850|RANBP10|57610|RAN binding protein 10	0.997774	0.0	denovo_WM_7:-27:0.998
chr3	179371993	179372151	reg1003782.p2	8.337	+	TSC_hg19_v1_chr3_+_179370901 NM_003940 U75362 BC016146 AK290338 AM393315 AM393392 AM393610 AM393780 DQ892472 DQ895684	-1177	+	TSC_hg19_v1_chr3_+_179322594 NM_001199957 NM_001199958 NM_002492 BX648034 BC005271 BC009796 AK313822 AF047181 BC093071 BC017909 CU679497	-49479	+	AY212270 BC032522 TSC_hg19_v1_chr3_-_179322427 BC021575 NM_020409 NM_177988	-49650	-	AB032593 NM_016559 AB032592 TSC_hg19_v1_chr3_-_179754937 AK299633 AK294501 AK314283 BC036183	382654	-	TSC_hg19_v1_chr3_+_180319985 NM_001042601 NM_133462 AK055984 AL832052 AL833086 BX648669 BC027990 AL833103 AY358762 AK074095 EU832789 GQ129409 CU693360	947931	+	AB075860 TSC_hg19_v1_chr3_+_180320970	948891	+	NM_003940|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##U75362|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##BC016146|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AK290338|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393315|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393392|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393610|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393780|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ892472|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ895684|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##NM_001199957|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_001199958|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_002492|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BX648034|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC005271|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC009796|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AK313822|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AF047181|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC093071|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC017909|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AY212270|MRPL47|57129|mitochondrial ribosomal protein L47##BC032522|MRPL47|57129|mitochondrial ribosomal protein L47##BC021575|MRPL47|57129|mitochondrial ribosomal protein L47##NM_020409|MRPL47|57129|mitochondrial ribosomal protein L47##NM_177988|MRPL47|57129|mitochondrial ribosomal protein L47##AB032593|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_016559|PEX5L|51555|peroxisomal biogenesis factor 5-like##AB032592|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK299633|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK294501|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK314283|PEX5L|51555|peroxisomal biogenesis factor 5-like##BC036183|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_001042601|TTC14|151613|tetratricopeptide repeat domain 14##NM_133462|TTC14|151613|tetratricopeptide repeat domain 14##AK055984|TTC14|151613|tetratricopeptide repeat domain 14##AL832052|TTC14|151613|tetratricopeptide repeat domain 14##AL833086|TTC14|151613|tetratricopeptide repeat domain 14##BX648669|TTC14|151613|tetratricopeptide repeat domain 14##BC027990|TTC14|151613|tetratricopeptide repeat domain 14##AL833103|TTC14|151613|tetratricopeptide repeat domain 14##AY358762|TTC14|151613|tetratricopeptide repeat domain 14##EU832789|TTC14|151613|tetratricopeptide repeat domain 14##GQ129409|TTC14|151613|tetratricopeptide repeat domain 14##AB075860|TTC14|151613|tetratricopeptide repeat domain 14	0.99496	0.0	
chr5	67599188	67599333	reg1003285.p1	8.337	+	AK094785 NM_001242466 AK294919	-10808	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	-12714	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	-14966	+	NM_001251969 NM_022902 NM_024055 BC017441 TSC_hg19_v1_chr5_+_68389821	790543	+	TSC_hg19_v1_chr5_+_68389892 AY358505 AF461760	790622	+	AK292925 TSC_hg19_v1_chr5_+_68389913	790653	+	AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001251969|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_022902|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_024055|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC017441|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AY358505|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AF461760|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK292925|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5	0.998203	0.0	
chr5	88306488	88306651	reg1003618.p1	8.337	+	AL833268 AL833274 NM_001131005 NM_001193347	-106675	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-121305	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-121449	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	1398970	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1463613	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1464009	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.999232	0.01372	denovo_WM_7:10:0.690
chr1	42186792	42186951	reg1003964.p1	8.336	+	BC034393 X55177 M65199 NM_001956	-236552	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-479035	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-479086	-	TSC_hg19_v1_chr1_-_42384357 BC040942	197471	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	197502	-	TSC_hg19_v1_chr1_-_42501606 BC046120	314758	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	0.9975	0.0	denovo_WM_7:10:0.884
chr1	51956229	51956337	reg1002870.p1	8.336	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-68517	-	AF007170 NM_001144832	-145545	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-160051	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	28640	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	28741	-	NM_024586 NM_148906 NM_148908 NM_148909	126262	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.995141	0.0	
chr5	180689101	180689237	reg1002315.p2	8.336	+	TSC_hg19_v1_chr5_+_180688213 BC016291	-942	+	AK054802 TSC_hg19_v1_chr5_-_180688115 BC007372 NM_032765 AB209243	-1044	-	BC014256 TSC_hg19_v1_chr5_-_180670905 BC010119 BC019093 BC032006 BC035460 BC019362 BC014788 BC000366 M24194 BC021993 AK095666 AK301468 D28398 AK310916 AK222488 NM_006098 AK303316 BC000214	-18266	-	BC137547 BC137568 NM_001005221 NM_001005224 NM_001005277	105108	+	None	None	None	None	None	None	AK054802|TRIM52|84851|tripartite motif containing 52##BC007372|TRIM52|84851|tripartite motif containing 52##NM_032765|TRIM52|84851|tripartite motif containing 52##AB209243|TRIM52|84851|tripartite motif containing 52##BC014256|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC010119|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019093|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC032006|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC035460|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019362|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC014788|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000366|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##M24194|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC021993|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK095666|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK301468|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##D28398|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK310916|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK222488|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##NM_006098|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK303316|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000214|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16	0.998307	0.0	
chr19	2394822	2394963	reg1003706.p2	8.335	+	AB109390 AB527446 AJ488946 AJ488947 NM_182973	-5117	+	TSC_hg19_v1_chr19_+_2328689 AJ345027 BC001788 BC028391	-66202	+	AB040965 AJ420897 TSC_hg19_v1_chr19_+_2328682 AY169315 AK308973	-66212	+	AF152352 DQ891755 DQ894937 TSC_hg19_v1_chr19_-_2427552 AK024764 AF144700 BC008607	32661	-	NM_012458 TSC_hg19_v1_chr19_-_2427893	33004	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	61998	-	AB109390|TMPRSS9|360200|transmembrane protease, serine 9##AJ488946|TMPRSS9|360200|transmembrane protease, serine 9##AJ488947|TMPRSS9|360200|transmembrane protease, serine 9##NM_182973|TMPRSS9|360200|transmembrane protease, serine 9##AJ345027|SPPL2B|56928|signal peptide peptidase-like 2B##BC001788|SPPL2B|56928|signal peptide peptidase-like 2B##BC028391|SPPL2B|56928|signal peptide peptidase-like 2B##AB040965|SPPL2B|56928|signal peptide peptidase-like 2B##AJ420897|SPPL2B|56928|signal peptide peptidase-like 2B##AY169315|SPPL2B|56928|signal peptide peptidase-like 2B##AF152352|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ891755|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ894937|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AK024764|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AF144700|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BC008607|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##NM_012458|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2	0.0	0.0	
chr22	42815367	42815547	reg1003573.p1	8.334	+	BC038245 TSC_hg19_v1_chr22_-_42765218	-50255	-	AB527391 NM_005650 NM_181492	-204080	-	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-288576	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	12924	-	BC031838 TSC_hg19_v1_chr22_-_42915796 BC041639 BC042335 AB527998 AK314650	100310	-	TSC_hg19_v1_chr22_-_42915803 BC073834 BC064560 BC035992 BC121118 BC121119 NM_015703	100357	-	NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC031838|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC041639|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC042335|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK314650|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC073834|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC064560|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC035992|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121118|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121119|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##NM_015703|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)	0.548676	0.0	denovo_WM_7:-40:0.549
chr1	178574905	178575035	reg1003231.p1	8.333	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	-92704	+	AF047711 NM_004841 AK290308	-264336	+	BC110611 TSC_hg19_v1_chr1_+_178063651	-511329	+	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	119403	+	AK223467 BC050640 AB056476 TSC_hg19_v1_chr1_-_178840178 AY358278 NM_004673	265176	-	TSC_hg19_v1_chr1_+_178995028 AB007944	420050	+	AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##AF047711|RASAL2|9462|RAS protein activator like 2##NM_004841|RASAL2|9462|RAS protein activator like 2##AK290308|RASAL2|9462|RAS protein activator like 2##BC110611|RASAL2|9462|RAS protein activator like 2##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK223467|ANGPTL1|9068|angiopoietin-like 1##BC050640|ANGPTL1|9068|angiopoietin-like 1##AB056476|ANGPTL1|9068|angiopoietin-like 1##AY358278|ANGPTL1|9068|angiopoietin-like 1##NM_004673|ANGPTL1|9068|angiopoietin-like 1##AB007944|FAM20B|9917|family with sequence similarity 20, member B	0.998401	0.0	
chr1	1609014	1609194	reg1003875.p1	8.331	+	BC054019 TSC_hg19_v1_chr1_-_1590434 BC104661 BC009375	-18651	-	AK297700 AB010962 AJ005256 NM_006983 BC025719 AB010961 AF056200	-41534	+	TSC_hg19_v1_chr1_+_1551275 NM_001170689 AK128167 BC035109 AK098785	-57804	+	TSC_hg19_v1_chr1_-_1623947 CR936618 BC062371	14861	-	BC092507 TSC_hg19_v1_chr1_-_1624149 AK125619	15054	-	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	15113	-	BC054019|CDK11A|728642|cyclin-dependent kinase 11A##BC104661|CDK11A|728642|cyclin-dependent kinase 11A##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AK297700|MMP23B|8510|matrix metallopeptidase 23B##AB010962|MMP23B|8510|matrix metallopeptidase 23B##AJ005256|MMP23B|8510|matrix metallopeptidase 23B##NM_006983|MMP23B|8510|matrix metallopeptidase 23B##BC025719|MMP23B|8510|matrix metallopeptidase 23B##AB010961|MMP23B|8510|matrix metallopeptidase 23B##AF056200|MMP23B|8510|matrix metallopeptidase 23B##NM_001170689|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK128167|MIB2|142678|mindbomb homolog 2 (Drosophila)##BC035109|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK098785|MIB2|142678|mindbomb homolog 2 (Drosophila)##CR936618|SLC35E2B|728661|solute carrier family 35, member E2B##BC062371|SLC35E2|9906|solute carrier family 35, member E2##BC092507|SLC35E2B|728661|solute carrier family 35, member E2B##AK125619|SLC35E2B|728661|solute carrier family 35, member E2B##AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B	0.991807	0.0	denovo_WM_7:-3:0.979
chr14	96976216	96976374	reg1003768.p1	8.331	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-7511	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-7549	+	TSC_hg19_v1_chr14_+_96968718 NM_001252006 NM_001252007 NM_032632 AK302406 BC036014	-7586	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	287420	+	AK098639 NM_182560	2201654	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	2761322	-	BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##NM_001252006|PAPOLA|10914|poly(A) polymerase alpha##NM_001252007|PAPOLA|10914|poly(A) polymerase alpha##NM_032632|PAPOLA|10914|poly(A) polymerase alpha##AK302406|PAPOLA|10914|poly(A) polymerase alpha##BC036014|PAPOLA|10914|poly(A) polymerase alpha##NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	1.560802	0.0	denovo_WM_7:104:0.507
chrX	56796375	56796514	reg1003297.p2	8.331	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-40753	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-206393	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-537534	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	225527	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	351484	-	BC071694 NM_019003	367613	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	1.774947	0.0	denovo_WM_7:-10:0.847	denovo_WM_7:-25:0.844
chr11	64068774	64068931	reg1002052.p2	8.330	+	AL117564 NM_001039496 AM392988 AB590987	-981	+	TSC_hg19_v1_chr11_+_64058772 AK309443 NM_033310 BC067791 AF259500 AK296021	-10021	+	AJ250392 NM_001170880 NM_020155	-15271	+	TSC_hg19_v1_chr11_+_64073040 L38487 NM_004451 BC063795 BC073956	4216	+	TSC_hg19_v1_chr11_-_64085009 AK312050 DQ892261 DQ895463 BC105294 BC029482 BC017172 AF161501 AF229068 NM_016404	16169	-	BC110983 NM_012094 NM_181651 NM_181652 TSC_hg19_v1_chr11_+_64085600 AF197952	16727	+	AL117564|C11orf20|25858|chromosome 11 open reading frame 20##NM_001039496|C11orf20|25858|chromosome 11 open reading frame 20##AM392988|C11orf20|25858|chromosome 11 open reading frame 20##AK309443|KCNK4|50801|potassium channel, subfamily K, member 4##NM_033310|KCNK4|50801|potassium channel, subfamily K, member 4##BC067791|KCNK4|50801|potassium channel, subfamily K, member 4##AF259500|KCNK4|50801|potassium channel, subfamily K, member 4##AK296021|KCNK4|50801|potassium channel, subfamily K, member 4##AJ250392|GPR137|56834|G protein-coupled receptor 137##NM_001170880|GPR137|56834|G protein-coupled receptor 137##NM_020155|GPR137|56834|G protein-coupled receptor 137##L38487|ESRRA|2101|estrogen-related receptor alpha##NM_004451|ESRRA|2101|estrogen-related receptor alpha##BC063795|ESRRA|2101|estrogen-related receptor alpha##BC073956|ESRRA|2101|estrogen-related receptor alpha##AK312050|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ892261|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ895463|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC105294|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC029482|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC017172|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF161501|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF229068|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##NM_016404|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC110983|PRDX5|25824|peroxiredoxin 5##NM_012094|PRDX5|25824|peroxiredoxin 5##NM_181651|PRDX5|25824|peroxiredoxin 5##NM_181652|PRDX5|25824|peroxiredoxin 5##AF197952|PRDX5|25824|peroxiredoxin 5	1.768764	0.0	denovo_WM_7:-78:0.213	denovo_WM_7:-99:0.387
chr11	118955543	118955698	reg1000130.p1	8.329	+	TSC_hg19_v1_chr11_+_118938530 AK302973 AF308800 AB527816	-17087	+	BC065563 TSC_hg19_v1_chr11_+_118938528	-17092	+	TSC_hg19_v1_chr11_+_118938517 AL834218	-17099	+	TSC_hg19_v1_chr11_+_118955594 NM_000190 AK290275 AK309544 AK310343 BC000520 BC019323 AK000628 D28419 AK131072 BC008149 X04808 CU678879	35	+	BX647328 NM_001024382 X04217	3090	+	CR457079 AB464561 BC013416 BC004915 BC011694 TSC_hg19_v1_chr11_-_118966173	10518	-	AK302973|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##AF308800|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##BC065563|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##AL834218|VPS11|55823|vacuolar protein sorting 11 homolog (S. cerevisiae)##NM_000190|HMBS|3145|hydroxymethylbilane synthase##AK290275|HMBS|3145|hydroxymethylbilane synthase##AK309544|HMBS|3145|hydroxymethylbilane synthase##AK310343|HMBS|3145|hydroxymethylbilane synthase##BC000520|HMBS|3145|hydroxymethylbilane synthase##BC019323|HMBS|3145|hydroxymethylbilane synthase##AK000628|HMBS|3145|hydroxymethylbilane synthase##D28419|HMBS|3145|hydroxymethylbilane synthase##AK131072|HMBS|3145|hydroxymethylbilane synthase##BC008149|HMBS|3145|hydroxymethylbilane synthase##X04808|HMBS|3145|hydroxymethylbilane synthase##BX647328|HMBS|3145|hydroxymethylbilane synthase##NM_001024382|HMBS|3145|hydroxymethylbilane synthase##X04217|HMBS|3145|hydroxymethylbilane synthase##CR457079|H2AFX|3014|H2A histone family, member X##BC013416|H2AFX|3014|H2A histone family, member X##BC004915|H2AFX|3014|H2A histone family, member X##BC011694|H2AFX|3014|H2A histone family, member X	0.0	0.0	
chr12	27687423	27687590	reg1003626.p2	8.329	+	NM_001198915 NM_001198916 NM_003622 NM_177444 TSC_hg19_v1_chr12_+_27677138 BC022873 BC001560 AK294267 AB033056 BC050281 AB049149 AK314350 AF034802 BC046159	-10371	+	NM_001145010	-67764	+	BC043511 TSC_hg19_v1_chr12_-_27599649	-87902	-	NM_001029874 BC140921 AY662682	161957	+	NM_001190864 NM_021821 TSC_hg19_v1_chr12_+_27863756 AF182422	176226	+	TSC_hg19_v1_chr12_+_27863764 BC015862 AK075378 AK075515 BC109372 BC063515 BC028346	176268	+	NM_001198915|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_001198916|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_003622|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_177444|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC022873|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC001560|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AK294267|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AB033056|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC050281|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AB049149|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AK314350|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AF034802|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC046159|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001029874|REP15|387849|RAB15 effector protein##BC140921|REP15|387849|RAB15 effector protein##AY662682|REP15|387849|RAB15 effector protein##NM_001190864|MRPS35|60488|mitochondrial ribosomal protein S35##NM_021821|MRPS35|60488|mitochondrial ribosomal protein S35##AF182422|MRPS35|60488|mitochondrial ribosomal protein S35##BC015862|MRPS35|60488|mitochondrial ribosomal protein S35##AK075378|MRPS35|60488|mitochondrial ribosomal protein S35##AK075515|MRPS35|60488|mitochondrial ribosomal protein S35##BC109372|MRPS35|60488|mitochondrial ribosomal protein S35##BC063515|MRPS35|60488|mitochondrial ribosomal protein S35##BC028346|MRPS35|60488|mitochondrial ribosomal protein S35	0.997852	0.0	denovo_WM_7:-5:0.816
chr16	80661167	80661258	reg1002213.p1	8.329	+	AF125108 NM_130897 BC054892 BC035232	-86324	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1026597	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-2527757	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	176835	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	378872	+	TSC_hg19_v1_chr16_+_81040132 BC007334	378931	+	AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N	1.389273	0.0	denovo_WM_7:-14:0.367	denovo_WM_7:-18:0.366
chr11	77706083	77706207	reg1003505.p1	8.328	+	BC009995 TSC_hg19_v1_chr11_-_77705714 AK290866 BC015664 NM_033547	-430	-	AL834171 EU446555 TSC_hg19_v1_chr11_-_77705710 CU679559 AK000455 BC018672	-461	-	TSC_hg19_v1_chr11_+_77532238 AF092136 AK024688 BC002752 NM_024684	-173942	+	BC001062 BC001929 NM_023930	28157	-	TSC_hg19_v1_chr11_+_77774906 AK311975 NM_003251 BC031989 EU447014	68768	+	CR533448 AB528753 AM392713 TSC_hg19_v1_chr11_-_77790909 AK022785 AF087659 AF369951 AK098173 AL050278 AF369952 AK023013 AF070652 BC007323	84729	-	BC009995|INTS4|92105|integrator complex subunit 4##AK290866|INTS4|92105|integrator complex subunit 4##BC015664|INTS4|92105|integrator complex subunit 4##NM_033547|INTS4|92105|integrator complex subunit 4##AL834171|INTS4|92105|integrator complex subunit 4##EU446555|INTS4|92105|integrator complex subunit 4##AK000455|INTS4|92105|integrator complex subunit 4##BC018672|INTS4|92105|integrator complex subunit 4##AF092136|C11orf67|28971|chromosome 11 open reading frame 67##AK024688|C11orf67|28971|chromosome 11 open reading frame 67##BC002752|C11orf67|28971|chromosome 11 open reading frame 67##NM_024684|C11orf67|28971|chromosome 11 open reading frame 67##BC001062|KCTD14|65987|potassium channel tetramerisation domain containing 14##BC001929|KCTD14|65987|potassium channel tetramerisation domain containing 14##NM_023930|KCTD14|65987|potassium channel tetramerisation domain containing 14##AK311975|THRSP|7069|thyroid hormone responsive##NM_003251|THRSP|7069|thyroid hormone responsive##BC031989|THRSP|7069|thyroid hormone responsive##EU447014|THRSP|7069|thyroid hormone responsive##CR533448|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AM392713|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK022785|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF087659|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369951|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK098173|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AL050278|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369952|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK023013|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF070652|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##BC007323|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa	0.0	0.0	
chr3	40233503	40233624	reg1004388.p1	8.328	+	TSC_hg19_v1_chr3_+_39851138 BC092512 AK126013 AF396687 NM_015460 BC109311 BC109312	-382388	+	NM_182935 BC075796 AK127034 AK290187 BC022471	-724444	+	BC071970 J03799 NM_001012321 BC068062 BC008867 S37431 DQ891146 DQ894326 AB464170 BT007219 CU679157 CU688210 X61156	-784421	+	BC031275 AK057627 AK309874 AK309698 TSC_hg19_v1_chr3_-_40351022 BC045736 BC118565 BC106900	117505	-	NM_005875 TSC_hg19_v1_chr3_+_40351187 AK223448 BC006996 AF077052	117617	+	TSC_hg19_v1_chr3_+_40351197 AF263452	117643	+	BC092512|MYRIP|25924|myosin VIIA and Rab interacting protein##AK126013|MYRIP|25924|myosin VIIA and Rab interacting protein##AF396687|MYRIP|25924|myosin VIIA and Rab interacting protein##NM_015460|MYRIP|25924|myosin VIIA and Rab interacting protein##BC109311|MYRIP|25924|myosin VIIA and Rab interacting protein##BC109312|MYRIP|25924|myosin VIIA and Rab interacting protein##NM_182935|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC075796|MOBP|4336|myelin-associated oligodendrocyte basic protein##AK127034|MOBP|4336|myelin-associated oligodendrocyte basic protein##AK290187|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC022471|MOBP|4336|myelin-associated oligodendrocyte basic protein##BC071970|RPSA|3921|ribosomal protein SA##J03799|RPSA|3921|ribosomal protein SA##NM_001012321|RPSA|3921|ribosomal protein SA##BC068062|RPSA|3921|ribosomal protein SA##BC008867|RPSA|3921|ribosomal protein SA##S37431|RPSA|3921|ribosomal protein SA##DQ891146|RPSA|3921|ribosomal protein SA##DQ894326|RPSA|3921|ribosomal protein SA##BT007219|RPSA|3921|ribosomal protein SA##X61156|RPSA|3921|ribosomal protein SA##BC031275|FLJ33065|440952|uncharacterized LOC440952##AK057627|FLJ33065|440952|uncharacterized LOC440952##AK309874|FLJ33065|440952|uncharacterized LOC440952##BC045736|FLJ33065|440952|uncharacterized LOC440952##BC118565|FLJ33065|440952|uncharacterized LOC440952##BC106900|FLJ33065|440952|uncharacterized LOC440952##NM_005875|EIF1B|10289|eukaryotic translation initiation factor 1B##AK223448|EIF1B|10289|eukaryotic translation initiation factor 1B##BC006996|EIF1B|10289|eukaryotic translation initiation factor 1B##AF077052|EIF1B|10289|eukaryotic translation initiation factor 1B##AF263452|EIF1B|10289|eukaryotic translation initiation factor 1B	0.52309	0.088686	denovo_WM_7:39:0.432
chr17	3668658	3668767	reg1003061.p1	8.326	+	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	-41496	+	TSC_hg19_v1_chr17_-_3627077 AF289864	-41610	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-69120	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	35741	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	35799	-	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	80798	-	BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85	0.998839	0.0	
chr4	100806314	100806460	reg1003861.p1	8.326	+	NM_014395 AF186022 AF163254 AF161551 AK301355 AF178987 BC012924 AB528911 DQ893576 DQ894665	-68362	+	TSC_hg19_v1_chr4_+_100495977 AK225328 BC062696 X59657 AK290793 BC125110 BC125111 X75500 X91148	-310380	+	AK302602 NM_000253	-321148	+	AF130115 TSC_hg19_v1_chr4_-_100815585 AK311755 BC110402 BC005340 AK223311 AF201947 BC026245	9188	-	TSC_hg19_v1_chr4_-_100815667 NM_001243736 NM_021970	9297	-	HQ257892 TSC_hg19_v1_chr4_-_100867740 AY358272 BX537609 AL833412 BC022248	61367	-	NM_014395|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF186022|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF163254|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF161551|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AK301355|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF178987|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##BC012924|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##DQ893576|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##DQ894665|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AK225328|MTTP|4547|microsomal triglyceride transfer protein##BC062696|MTTP|4547|microsomal triglyceride transfer protein##X59657|MTTP|4547|microsomal triglyceride transfer protein##AK290793|MTTP|4547|microsomal triglyceride transfer protein##BC125110|MTTP|4547|microsomal triglyceride transfer protein##BC125111|MTTP|4547|microsomal triglyceride transfer protein##X75500|MTTP|4547|microsomal triglyceride transfer protein##X91148|MTTP|4547|microsomal triglyceride transfer protein##AK302602|MTTP|4547|microsomal triglyceride transfer protein##NM_000253|MTTP|4547|microsomal triglyceride transfer protein##AF130115|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AK311755|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC110402|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC005340|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AK223311|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AF201947|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC026245|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##NM_001243736|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##NM_021970|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##HQ257892|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##AY358272|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##BX537609|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##AL833412|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##BC022248|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14	0.0	0.766019	CTCF.p2:41:0.766
chr1	93427985	93428133	reg1002152.p1	8.325	+	TSC_hg19_v1_chr1_-_93427020 BC070342 NM_001006605 NM_001252269 NM_001252270 NM_001252273	-1021	-	TSC_hg19_v1_chr1_-_93399531 BX648424	-28467	-	NM_001252271	-85353	-	TSC_hg19_v1_chr1_+_93544836 NM_001164391 NM_001164392 NM_001164393 NM_007358 AK290318 AK302900 AJ010014 AK302776 AF086908 BC010013 BC001897	116774	+	AY359039 BC016556 AF151858 TSC_hg19_v1_chr1_-_93645971 AK293308 BC016365 AK312787 CR936808 AK125882	217928	-	BC070051 NM_001167830 NM_016040	218186	-	BC070342|FAM69A|388650|family with sequence similarity 69, member A##NM_001006605|FAM69A|388650|family with sequence similarity 69, member A##NM_001252269|FAM69A|388650|family with sequence similarity 69, member A##NM_001252270|FAM69A|388650|family with sequence similarity 69, member A##NM_001252273|FAM69A|388650|family with sequence similarity 69, member A##NM_001252271|FAM69A|388650|family with sequence similarity 69, member A##NM_001164391|MTF2|22823|metal response element binding transcription factor 2##NM_001164392|MTF2|22823|metal response element binding transcription factor 2##NM_001164393|MTF2|22823|metal response element binding transcription factor 2##NM_007358|MTF2|22823|metal response element binding transcription factor 2##AK290318|MTF2|22823|metal response element binding transcription factor 2##AK302900|MTF2|22823|metal response element binding transcription factor 2##AJ010014|MTF2|22823|metal response element binding transcription factor 2##AK302776|MTF2|22823|metal response element binding transcription factor 2##AF086908|MTF2|22823|metal response element binding transcription factor 2##BC010013|MTF2|22823|metal response element binding transcription factor 2##BC001897|MTF2|22823|metal response element binding transcription factor 2##AY359039|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016556|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AF151858|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK293308|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016365|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK312787|TMED5|50999|transmembrane emp24 protein transport domain containing 5##CR936808|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK125882|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC070051|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_001167830|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_016040|TMED5|50999|transmembrane emp24 protein transport domain containing 5	0.999708	0.0	
chr7	2481330	2481489	reg1003188.p2	8.325	+	TSC_hg19_v1_chr7_+_2443245 BC095492 BC002918 BC015954 AK223191 AK223211 AK313484 AF239822 AY358574	-38166	+	TSC_hg19_v1_chr7_+_2443191 NM_001243794 NM_001243795 NM_018641	-38229	+	TSC_hg19_v1_chr7_+_2394547 BC110865	-86862	+	AK096284 NM_001166355	70753	+	BC014851 NM_002304	76087	+	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	78028	+	BC095492|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC002918|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC015954|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223191|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223211|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK313484|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AF239822|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AY358574|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243794|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243795|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_018641|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC110865|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK096284|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001166355|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC014851|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_002304|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	1.989223	0.0	denovo_WM_7:2:0.575	denovo_WM_7:4:0.222
chr7	51770472	51770602	reg1003318.p2	8.323	+	TSC_hg19_v1_chr7_-_51384501 BC094695 AB014533 BC150263 AK309254 BC111496 NM_015198	-386051	-	AB385366 TSC_hg19_v1_chr7_-_51384416 BC136441 BC144099	-386157	-	TSC_hg19_v1_chr7_-_50861150 NM_001001555	-909383	-	NM_182595	1332811	+	NM_182546 TSC_hg19_v1_chr7_+_54610091 BC028404	2839545	+	TSC_hg19_v1_chr7_-_54826876 BC009480 AK308617 AF086539	3056342	-	BC094695|COBL|23242|cordon-bleu homolog (mouse)##AB014533|COBL|23242|cordon-bleu homolog (mouse)##BC150263|COBL|23242|cordon-bleu homolog (mouse)##AK309254|COBL|23242|cordon-bleu homolog (mouse)##BC111496|COBL|23242|cordon-bleu homolog (mouse)##NM_015198|COBL|23242|cordon-bleu homolog (mouse)##BC136441|COBL|23242|cordon-bleu homolog (mouse)##BC144099|COBL|23242|cordon-bleu homolog (mouse)##NM_001001555|GRB10|2887|growth factor receptor-bound protein 10##NM_182595|POM121L12|285877|POM121 membrane glycoprotein-like 12##NM_182546|VSTM2A|222008|V-set and transmembrane domain containing 2A##BC028404|VSTM2A|222008|V-set and transmembrane domain containing 2A##BC009480|SEC61G|23480|Sec61 gamma subunit##AK308617|SEC61G|23480|Sec61 gamma subunit##AF086539|SEC61G|23480|Sec61 gamma subunit	0.796326	0.0	denovo_WM_7:-25:0.796
chr1	46791546	46791702	reg1004193.p1	8.322	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-22237	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-22576	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-22607	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	14819	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	68352	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	181048	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.983521	0.0	denovo_WM_7:13:0.237	denovo_WM_7:14:0.237	denovo_WM_7:15:0.237	denovo_WM_7:16:0.237
chr3	16413977	16414157	reg1003739.p1	8.321	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-107359	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-107678	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-197873	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	140951	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	141157	-	BX648638 AK303026 NM_001190811	232203	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	0.163304	0.0	
chr3	9001516	9001643	reg1003276.p1	8.321	+	TSC_hg19_v1_chr3_-_8811300 NM_000916	-190295	-	X64878 TSC_hg19_v1_chr3_-_8811121 AK313830	-190493	-	AK291892 NM_001234 NM_033337 BC069368 AF036365 BC102033 BC102036 BC102037 Y14747 CU686780 AF043101	-226054	+	AB528316 DQ891197 DQ894380 TSC_hg19_v1_chr3_-_9005128 AY004333 BC001302 AK222771 AF169796 AK023075 NM_020165	3551	-	AB007871 AB384477 AK094355 AF427144 TSC_hg19_v1_chr3_-_9290871 AF464189	289165	-	TSC_hg19_v1_chr3_-_9291320 NM_001033117 NM_014850 BC140004 AK054831	289739	-	NM_000916|OXTR|5021|oxytocin receptor##X64878|OXTR|5021|oxytocin receptor##AK313830|OXTR|5021|oxytocin receptor##AK291892|CAV3|859|caveolin 3##NM_001234|CAV3|859|caveolin 3##NM_033337|CAV3|859|caveolin 3##BC069368|CAV3|859|caveolin 3##AF036365|CAV3|859|caveolin 3##BC102033|CAV3|859|caveolin 3##BC102036|CAV3|859|caveolin 3##BC102037|CAV3|859|caveolin 3##Y14747|CAV3|859|caveolin 3##AF043101|CAV3|859|caveolin 3##DQ891197|RAD18|56852|RAD18 homolog (S. cerevisiae)##DQ894380|RAD18|56852|RAD18 homolog (S. cerevisiae)##AY004333|RAD18|56852|RAD18 homolog (S. cerevisiae)##BC001302|RAD18|56852|RAD18 homolog (S. cerevisiae)##AK222771|RAD18|56852|RAD18 homolog (S. cerevisiae)##AF169796|RAD18|56852|RAD18 homolog (S. cerevisiae)##AK023075|RAD18|56852|RAD18 homolog (S. cerevisiae)##NM_020165|RAD18|56852|RAD18 homolog (S. cerevisiae)##AB007871|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AK094355|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AF427144|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AF464189|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##NM_001033117|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##NM_014850|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##BC140004|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AK054831|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3	0.990736	0.0	denovo_WM_7:-4:0.237	denovo_WM_7:-5:0.237	denovo_WM_7:-6:0.237	denovo_WM_7:-7:0.237
chr19	7224244	7224383	reg1003393.p2	8.320	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-124762	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-154598	+	AK315405 NM_001044387 NM_001044388 NM_024341	-154851	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	69647	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	235694	+	TSC_hg19_v1_chr19_+_7460061 AB011093	235764	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.995661	0.0	
chr11	75039903	75040080	reg1000650.p1	8.317	+	NM_001195528	-88042	+	FM209054 FM209053 AF205073 NM_001145211 AK294503	-169150	+	NM_001145212 NM_007256 FM209050 TSC_hg19_v1_chr11_+_74862151 AK304783 AK302492 AK290234 AK300134 AB020687 BC127254 BC041095 AB026256 AL117465	-177847	+	AF084040 AF084940 FJ348262 CU678548 AB462955 TSC_hg19_v1_chr11_-_75062708 AK289718 BC003636 NM_004041 NM_020251	22825	-	TSC_hg19_v1_chr11_+_75110562 D28344 AK130960 BC034149 NM_001005 AK129794 AK313051 BC013231 BC100284 X55715 BC071917 AK223048 BC003137 BC071669 S42658 AB464166 CU678394 DQ892888 DQ896136 U14990 U14991 U14992 BC003577 BC013196 AB062288	70584	+	HQ258227 BC132708 BC132710 TSC_hg19_v1_chr11_-_75141083 AK091109 AX746783	101069	-	NM_001195528|LOC100507050|100507050|uncharacterized LOC100507050##FM209053|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF205073|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145211|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK294503|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145212|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_007256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209050|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK304783|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK302492|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK290234|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK300134|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB020687|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC127254|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC041095|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB026256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AL117465|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF084040|ARRB1|408|arrestin, beta 1##AF084940|ARRB1|408|arrestin, beta 1##FJ348262|ARRB1|408|arrestin, beta 1##AK289718|ARRB1|408|arrestin, beta 1##BC003636|ARRB1|408|arrestin, beta 1##NM_004041|ARRB1|408|arrestin, beta 1##NM_020251|ARRB1|408|arrestin, beta 1##D28344|RPS3|6188|ribosomal protein S3##AK130960|RPS3|6188|ribosomal protein S3##BC034149|RPS3|6188|ribosomal protein S3##NM_001005|RPS3|6188|ribosomal protein S3##AK129794|RPS3|6188|ribosomal protein S3##AK313051|RPS3|6188|ribosomal protein S3##BC013231|RPS3|6188|ribosomal protein S3##BC100284|RPS3|6188|ribosomal protein S3##X55715|RPS3|6188|ribosomal protein S3##BC071917|RPS3|6188|ribosomal protein S3##AK223048|RPS3|6188|ribosomal protein S3##BC003137|RPS3|6188|ribosomal protein S3##BC071669|RPS3|6188|ribosomal protein S3##S42658|RPS3|6188|ribosomal protein S3##DQ892888|RPS3|6188|ribosomal protein S3##DQ896136|RPS3|6188|ribosomal protein S3##U14990|RPS3|6188|ribosomal protein S3##U14991|RPS3|6188|ribosomal protein S3##U14992|RPS3|6188|ribosomal protein S3##BC003577|RPS3|6188|ribosomal protein S3##BC013196|RPS3|6188|ribosomal protein S3##AB062288|RPS3|6188|ribosomal protein S3##HQ258227|KLHL35|283212|kelch-like 35 (Drosophila)##BC132708|KLHL35|283212|kelch-like 35 (Drosophila)##BC132710|KLHL35|283212|kelch-like 35 (Drosophila)##AK091109|KLHL35|283212|kelch-like 35 (Drosophila)	0.0	0.623338	CTCF.p2:-66:0.623
chr7	127405316	127405437	reg1003332.p2	8.317	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	-113040	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	-113140	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	-113194	+	BC111561 BC111745 AF196976 AJ297858 NM_022143 AK172751 TSC_hg19_v1_chr7_-_127671066 AK314047	265660	-	NM_000230 U43653 TSC_hg19_v1_chr7_+_127881332 AK313553 BC060830 BC069323 BC069452 BC069527	475957	+	CU680694 TSC_hg19_v1_chr7_-_127983862	578478	-	BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC111561|LRRC4|64101|leucine rich repeat containing 4##BC111745|LRRC4|64101|leucine rich repeat containing 4##AF196976|LRRC4|64101|leucine rich repeat containing 4##AJ297858|LRRC4|64101|leucine rich repeat containing 4##NM_022143|LRRC4|64101|leucine rich repeat containing 4##AK172751|LRRC4|64101|leucine rich repeat containing 4##AK314047|LRRC4|64101|leucine rich repeat containing 4##NM_000230|LEP|3952|leptin##U43653|LEP|3952|leptin##AK313553|LEP|3952|leptin##BC060830|LEP|3952|leptin##BC069323|LEP|3952|leptin##BC069452|LEP|3952|leptin##BC069527|LEP|3952|leptin	0.0	0.0	
chr10	88562306	88562432	reg1003633.p1	8.316	+	TSC_hg19_v1_chr10_+_88516526 NM_004329 BC028383 AK291764 Z22535	-45882	+	AK304760 TSC_hg19_v1_chr10_+_88428267 AK300692 AK297871 NM_001080116 AJ133766 BC010929 NM_001080114 NM_001080115 NM_001171611 NM_007078 AB014513 AF276807 AF276808 AF276809 AJ133767 AJ133768	-134014	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	-134183	+	TSC_hg19_v1_chr10_-_88717330 BC072456 AK304727 AK023527 AK293822 BC094744 BC064415 AK308401 NM_024756	155002	-	NM_003087 AK223367 AK311652 BC014098 AK312141 AF017256 AF411524 EU019993 AF010126 DQ892334 DQ892505 DQ895719 EU176715 AB464279 CR541788 CR541790	156001	+	NM_006829 TSC_hg19_v1_chr10_+_88728238 AK304688 AK312031 BC004471 D45370	165859	+	NM_004329|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC028383|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK291764|BMPR1A|657|bone morphogenetic protein receptor, type IA##Z22535|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK304760|LDB3|11155|LIM domain binding 3##AK300692|LDB3|11155|LIM domain binding 3##AK297871|LDB3|11155|LIM domain binding 3##NM_001080116|LDB3|11155|LIM domain binding 3##AJ133766|LDB3|11155|LIM domain binding 3##BC010929|LDB3|11155|LIM domain binding 3##NM_001080114|LDB3|11155|LIM domain binding 3##NM_001080115|LDB3|11155|LIM domain binding 3##NM_001171611|LDB3|11155|LIM domain binding 3##NM_007078|LDB3|11155|LIM domain binding 3##AB014513|LDB3|11155|LIM domain binding 3##AF276807|LDB3|11155|LIM domain binding 3##AF276808|LDB3|11155|LIM domain binding 3##AF276809|LDB3|11155|LIM domain binding 3##AJ133767|LDB3|11155|LIM domain binding 3##AJ133768|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3##BC072456|MMRN2|79812|multimerin 2##AK304727|MMRN2|79812|multimerin 2##AK023527|MMRN2|79812|multimerin 2##AK293822|MMRN2|79812|multimerin 2##BC094744|MMRN2|79812|multimerin 2##BC064415|MMRN2|79812|multimerin 2##AK308401|MMRN2|79812|multimerin 2##NM_024756|MMRN2|79812|multimerin 2##NM_003087|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK223367|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##BC014098|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK312141|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF017256|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF411524|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU019993|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF010126|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892334|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892505|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ895719|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU176715|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541788|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541790|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##NM_006829|C10orf116|10974|chromosome 10 open reading frame 116##AK312031|C10orf116|10974|chromosome 10 open reading frame 116##BC004471|C10orf116|10974|chromosome 10 open reading frame 116##D45370|C10orf116|10974|chromosome 10 open reading frame 116	0.994132	0.0	denovo_WM_7:24:0.896
chr17	38710024	38710133	reg1003381.p2	8.315	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-52232	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-110259	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-135954	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	11640	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	93992	-	BC069196 TSC_hg19_v1_chr17_-_38804818	94718	-	AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.997315	0.0	denovo_WM_7:-31:0.258	denovo_WM_7:-32:0.533
chr22	27011304	27011435	reg1002943.p2	8.315	+	TSC_hg19_v1_chr22_-_26986083 AK074538 NM_003595	-25289	-	TSC_hg19_v1_chr22_-_26986070 AK304545 BC001057 AL136623	-25302	-	TSC_hg19_v1_chr22_-_26986052 AF049891 BC017509	-25318	-	CR456425 NM_001887 U35340 TSC_hg19_v1_chr22_-_27013992	2614	-	BC036790 TSC_hg19_v1_chr22_-_27014064	2693	-	BC069404 CR456424 NM_001886 U59057 AB528112 CU012985 CU013273 BC096171 BC096172 BC096173 BC096174	6562	+	AK074538|TPST2|8459|tyrosylprotein sulfotransferase 2##NM_003595|TPST2|8459|tyrosylprotein sulfotransferase 2##AK304545|TPST2|8459|tyrosylprotein sulfotransferase 2##BC001057|TPST2|8459|tyrosylprotein sulfotransferase 2##AL136623|TPST2|8459|tyrosylprotein sulfotransferase 2##AF049891|TPST2|8459|tyrosylprotein sulfotransferase 2##BC017509|TPST2|8459|tyrosylprotein sulfotransferase 2##CR456425|CRYBB1|1414|crystallin, beta B1##NM_001887|CRYBB1|1414|crystallin, beta B1##U35340|CRYBB1|1414|crystallin, beta B1##BC036790|CRYBB1|1414|crystallin, beta B1##BC069404|CRYBA4|1413|crystallin, beta A4##CR456424|CRYBA4|1413|crystallin, beta A4##NM_001886|CRYBA4|1413|crystallin, beta A4##U59057|CRYBA4|1413|crystallin, beta A4##CU012985|CRYBA4|1413|crystallin, beta A4##CU013273|CRYBA4|1413|crystallin, beta A4##BC096171|CRYBA4|1413|crystallin, beta A4##BC096172|CRYBA4|1413|crystallin, beta A4##BC096173|CRYBA4|1413|crystallin, beta A4##BC096174|CRYBA4|1413|crystallin, beta A4	0.959776	0.0	denovo_WM_7:-28:0.230	denovo_WM_7:-30:0.214	denovo_WM_7:-33:0.504
chr6	26569070	26569228	reg1003837.p1	8.312	+	TSC_hg19_v1_chr6_+_26538630 NM_006353 AK311841 BC001282	-30519	+	U39576 BC096312 BC096313 BC096314 BC096315 NM_001732	-67678	+	NM_001197234 NM_007049 NM_078476 TSC_hg19_v1_chr6_+_26458182 AK297098 NM_001197233 BC016661 AB209777 U90543	-110959	+	TSC_hg19_v1_chr6_+_26597203 NM_013375 BC066313 BC048812 AB027258 AB463399 CU688138 CU690582 EU446795	28058	+	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	90803	-	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	531416	-	NM_006353|HMGN4|10473|high mobility group nucleosomal binding domain 4##AK311841|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC001282|HMGN4|10473|high mobility group nucleosomal binding domain 4##U39576|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096312|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096313|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096314|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096315|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001732|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001197234|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_007049|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_078476|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AK297098|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001197233|BTN2A1|11120|butyrophilin, subfamily 2, member A1##BC016661|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AB209777|BTN2A1|11120|butyrophilin, subfamily 2, member A1##U90543|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_013375|ABT1|29777|activator of basal transcription 1##BC066313|ABT1|29777|activator of basal transcription 1##BC048812|ABT1|29777|activator of basal transcription 1##AB027258|ABT1|29777|activator of basal transcription 1##EU446795|ABT1|29777|activator of basal transcription 1##NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj	0.251769	0.0	
chr9	85621420	85621542	reg1003609.p1	8.311	+	AK128831 NM_001001670	-1017795	+	NM_207416 AK308327	-1063038	+	NM_001145197 AK125847 AK308327	-1078110	+	AK290986 TSC_hg19_v1_chr9_-_85677861	56344	-	BC023566 NM_152573 TSC_hg19_v1_chr9_-_85678058 AK056176	56585	-	GQ129452 BC023560 NM_001244962	260666	-	AK128831|FAM75D1|389763|family with sequence similarity 75, member D1##NM_001001670|FAM75D1|389763|family with sequence similarity 75, member D1##NM_207416|FAM75D3|389762|family with sequence similarity 75, member D3##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4##AK290986|RASEF|158158|RAS and EF-hand domain containing##BC023566|RASEF|158158|RAS and EF-hand domain containing##NM_152573|RASEF|158158|RAS and EF-hand domain containing##AK056176|RASEF|158158|RAS and EF-hand domain containing##GQ129452|FRMD3|257019|FERM domain containing 3##BC023560|FRMD3|257019|FERM domain containing 3##NM_001244962|FRMD3|257019|FERM domain containing 3	0.602824	0.0	denovo_WM_7:-51:0.550
chr1	160316314	160316450	reg1003593.p2	8.310	+	NM_001098398 NM_004371 U24105	-2979	-	TSC_hg19_v1_chr1_+_160313175 AK299142 AY359120 BC100024 D87442	-3202	+	AF240468 NM_015331 TSC_hg19_v1_chr1_+_160313154 BC047621 AK314764 AK310741	-3268	+	M96739 AK313700 NM_005598 BC013789	20482	+	NM_020335 TSC_hg19_v1_chr1_+_160370394	53997	+	AB590474 AJ306388 AJ277141 AK313549 BC113893 BC114495 AK310085 AL832854 BC090928 AK300013 AK301026 AY358159 TSC_hg19_v1_chr1_-_160493043 AK303990 AK125624 NM_001184714 NM_001184715 NM_001184716 NM_052931	176647	-	NM_001098398|COPA|1314|coatomer protein complex, subunit alpha##NM_004371|COPA|1314|coatomer protein complex, subunit alpha##U24105|COPA|1314|coatomer protein complex, subunit alpha##AK299142|NCSTN|23385|nicastrin##AY359120|NCSTN|23385|nicastrin##BC100024|NCSTN|23385|nicastrin##D87442|NCSTN|23385|nicastrin##AF240468|NCSTN|23385|nicastrin##NM_015331|NCSTN|23385|nicastrin##BC047621|NCSTN|23385|nicastrin##AK314764|NCSTN|23385|nicastrin##AK310741|NCSTN|23385|nicastrin##M96739|NHLH1|4807|nescient helix loop helix 1##AK313700|NHLH1|4807|nescient helix loop helix 1##NM_005598|NHLH1|4807|nescient helix loop helix 1##BC013789|NHLH1|4807|nescient helix loop helix 1##NM_020335|VANGL2|57216|vang-like 2 (van gogh, Drosophila)##AJ306388|SLAMF6|114836|SLAM family member 6##AJ277141|SLAMF6|114836|SLAM family member 6##AK313549|SLAMF6|114836|SLAM family member 6##BC113893|SLAMF6|114836|SLAM family member 6##BC114495|SLAMF6|114836|SLAM family member 6##AK310085|SLAMF6|114836|SLAM family member 6##AL832854|SLAMF6|114836|SLAM family member 6##BC090928|SLAMF6|114836|SLAM family member 6##AK300013|SLAMF6|114836|SLAM family member 6##AK301026|SLAMF6|114836|SLAM family member 6##AY358159|SLAMF6|114836|SLAM family member 6##AK303990|SLAMF6|114836|SLAM family member 6##AK125624|SLAMF6|114836|SLAM family member 6##NM_001184714|SLAMF6|114836|SLAM family member 6##NM_001184715|SLAMF6|114836|SLAM family member 6##NM_001184716|SLAMF6|114836|SLAM family member 6##NM_052931|SLAMF6|114836|SLAM family member 6	0.977422	0.0	denovo_WM_7:24:0.810
chr15	43398339	43398478	reg1003752.p1	8.308	+	AF525401 AY061886 AK292516 TSC_hg19_v1_chr15_-_43398234 AK056441 NM_174916 BC113505 BC113507 AK302489	-169	-	AF525400 TSC_hg19_v1_chr15_-_43212975 AK131372 BC041876 NM_173500 BC071556	-185426	-	TSC_hg19_v1_chr15_-_43029327 AF525398 NM_138477	-369041	-	TSC_hg19_v1_chr15_-_43408716 D28374	10301	-	TSC_hg19_v1_chr15_+_43425795 BC009981 NM_024956	27505	+	AK308817 TSC_hg19_v1_chr15_+_43477589 NM_012142	79047	+	AF525401|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AY061886|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK292516|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK056441|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##NM_174916|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113505|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113507|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK302489|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AF525400|TTBK2|146057|tau tubulin kinase 2##AK131372|TTBK2|146057|tau tubulin kinase 2##BC041876|TTBK2|146057|tau tubulin kinase 2##NM_173500|TTBK2|146057|tau tubulin kinase 2##BC071556|TTBK2|146057|tau tubulin kinase 2##AF525398|CDAN1|146059|congenital dyserythropoietic anemia, type I##NM_138477|CDAN1|146059|congenital dyserythropoietic anemia, type I##D28374|RPS3A|6189|ribosomal protein S3A##BC009981|TMEM62|80021|transmembrane protein 62##NM_024956|TMEM62|80021|transmembrane protein 62##AK308817|CCNDBP1|23582|cyclin D-type binding-protein 1##NM_012142|CCNDBP1|23582|cyclin D-type binding-protein 1	0.113215	0.0	
chr3	182876540	182876720	reg1002659.p1	8.307	+	BC036395 TSC_hg19_v1_chr3_-_182833987	-42707	-	AK295293 TSC_hg19_v1_chr3_-_182817343 AK023051 AB029826 AF310339 BC004187 BC004214 AF310972 NM_020166	-59280	-	AB587379 CU678606 TSC_hg19_v1_chr3_-_182817309 CR749608 AK316428 AB209737 AL442091 AK294882	-59349	-	TSC_hg19_v1_chr3_-_182880435 DQ892118	3809	-	TSC_hg19_v1_chr3_-_182880523 AB013924 AK313172 BC032940 NM_014398	3934	-	TSC_hg19_v1_chr3_+_182970969 NM_032047 AK074424	94318	+	BC036395|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK295293|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK023051|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AB029826|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AF310339|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC004187|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC004214|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AF310972|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##NM_020166|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##CR749608|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK316428|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AB209737|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AL442091|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK294882|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##DQ892118|LAMP3|27074|lysosomal-associated membrane protein 3##AB013924|LAMP3|27074|lysosomal-associated membrane protein 3##AK313172|LAMP3|27074|lysosomal-associated membrane protein 3##BC032940|LAMP3|27074|lysosomal-associated membrane protein 3##NM_014398|LAMP3|27074|lysosomal-associated membrane protein 3##NM_032047|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK074424|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	1.320276	0.0	denovo_WM_7:60:0.831
chr5	107007828	107007978	reg1002093.p1	8.307	+	AK308672 NM_001962 U26403	-1313	-	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4109422	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4413446	+	TSC_hg19_v1_chr5_-_107717106 AK126722	709227	-	BC063316 NM_001163315	709895	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	1056077	-	AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AB593118|HP07349|100652853|uncharacterized protein HP07349	0.0	0.0	
chr5	32573291	32573467	reg1003243.p1	8.306	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-128443	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-128601	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-170026	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	12277	+	NM_001204376 AK300094 AK308301	137371	+	AK290870 NM_000908 NM_001204375 M59305	138109	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.399394	0.0	
chr2	191569188	191569365	reg1003425.p2	8.304	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	-55310	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-169810	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-169849	-	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	176270	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	176281	+	TSC_hg19_v1_chr2_+_191745568 AF097495 Y08264 AF327434	176308	+	NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase##AF097495|GLS|2744|glutaminase##Y08264|GLS|2744|glutaminase##AF327434|GLS|2744|glutaminase	0.991493	0.0	denovo_WM_7:31:0.439	denovo_WM_7:32:0.439
chr1	230404796	230404912	reg1003594.p2	8.303	+	TSC_hg19_v1_chr1_+_230203016 AK296886 AK290048 AK304029 AB591001 X85019	-201858	+	TSC_hg19_v1_chr1_+_230202957 BC041120 NM_004481	-201912	+	TSC_hg19_v1_chr1_+_229761993 BC114559 BC114963	-642840	+	BC150638 NM_024554	108536	-	TSC_hg19_v1_chr1_+_230778205 NM_001145036 NM_007357	373342	+	TSC_hg19_v1_chr1_+_230778250 AL832190 BC014960 AK302791	373379	+	AK296886|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK290048|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK304029|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##X85019|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC041120|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##NM_004481|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC114559|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC114963|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC150638|PGBD5|79605|piggyBac transposable element derived 5##NM_024554|PGBD5|79605|piggyBac transposable element derived 5##NM_001145036|COG2|22796|component of oligomeric golgi complex 2##NM_007357|COG2|22796|component of oligomeric golgi complex 2##AL832190|COG2|22796|component of oligomeric golgi complex 2##BC014960|COG2|22796|component of oligomeric golgi complex 2##AK302791|COG2|22796|component of oligomeric golgi complex 2	1.990649	0.0	denovo_WM_7:41:0.408	denovo_WM_7:44:0.272	denovo_WM_7:88:0.841
chr5	8563776	8563930	reg1004336.p1	8.302	+	TSC_hg19_v1_chr5_+_7869306 BC062577	-694543	+	AF121214 BC109216 BC109217 NM_002454 NM_024010 TSC_hg19_v1_chr5_+_7869273 AK308442 AK311663 AF025794 BC054816 BC035977	-694594	+	TSC_hg19_v1_chr5_-_7869116 AK026927 AF161354 NM_024091	-694721	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	982341	-	BC095521 NM_019599	1066609	-	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	1686131	-	BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF121214|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109216|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109217|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_002454|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_024010|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK308442|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK311663|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF025794|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC054816|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC035977|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK026927|FASTKD3|79072|FAST kinase domains 3##AF161354|FASTKD3|79072|FAST kinase domains 3##NM_024091|FASTKD3|79072|FAST kinase domains 3##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##BC063406|FAM173B|134145|family with sequence similarity 173, member B	1.988914	0.0	denovo_WM_7:-36:0.813	denovo_WM_7:-53:0.309	denovo_WM_7:-54:0.310	denovo_WM_7:-55:0.312
chr19	11404539	11404656	reg1001355.p2	8.300	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-31459	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-54301	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-96135	-	AF133424 NM_012466 BC029908	2236	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	45703	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	52336	-	AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205	0.0	0.0	
chr9	131418159	131418339	reg1003095.p1	8.300	+	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-29506	+	X86901 TSC_hg19_v1_chr9_+_131388179	-30071	+	TSC_hg19_v1_chr9_+_131314868 NM_001130438 NM_001195532 NM_003127 AK294753 AK300386 AK307676 BC034956 AB191262 AB209860 BC051801 J05243 BC053521 U83867	-103459	+	TSC_hg19_v1_chr9_-_131418938 BC001614	714	-	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	817	-	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	27755	+	AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##X86901|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001130438|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001195532|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_003127|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK294753|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK300386|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK307676|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC034956|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB191262|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB209860|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC051801|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##J05243|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC053521|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##U83867|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC001614|WDR34|89891|WD repeat domain 34##BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene	0.99897	0.0	denovo_WM_7:-51:0.314	denovo_WM_7:-52:0.314	denovo_WM_7:-53:0.314
chr12	68434339	68434438	reg1003422.p2	8.299	+	TSC_hg19_v1_chr12_+_68042500 AK313937 NM_003583 NM_006482 BC005809 BC006375 Y13493	-391765	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	-770958	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	-771216	+	X62468 X62469 X62470 X62471 X62472 X62473 X62474 AF506749 AY044154 AY255839 X87308 AB451324 AB451453 AB590804 AY255837 AM903379 V00543 X13274 NM_000619 X01992 BC070256	119034	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	185164	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	212916	-	AK313937|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_003583|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_006482|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC005809|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC006375|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##Y13493|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##X62468|IFNG|3458|interferon, gamma##X62469|IFNG|3458|interferon, gamma##X62470|IFNG|3458|interferon, gamma##X62471|IFNG|3458|interferon, gamma##X62472|IFNG|3458|interferon, gamma##X62473|IFNG|3458|interferon, gamma##X62474|IFNG|3458|interferon, gamma##AF506749|IFNG|3458|interferon, gamma##AY044154|IFNG|3458|interferon, gamma##AY255839|IFNG|3458|interferon, gamma##X87308|IFNG|3458|interferon, gamma##AB451324|IFNG|3458|interferon, gamma##AB451453|IFNG|3458|interferon, gamma##AY255837|IFNG|3458|interferon, gamma##AM903379|IFNG|3458|interferon, gamma##V00543|IFNG|3458|interferon, gamma##X13274|IFNG|3458|interferon, gamma##NM_000619|IFNG|3458|interferon, gamma##X01992|IFNG|3458|interferon, gamma##BC070256|IFNG|3458|interferon, gamma##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22	0.559263	0.912089	denovo_WM_7:-22:0.528	CTCF.p2:31:0.912
chr3	98282592	98282772	reg1000906.p1	8.299	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-31873	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-40816	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-40917	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	29737	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	168563	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	168905	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.0	0.0	
chr16	30137965	30138126	reg1003735.p2	8.297	+	TSC_hg19_v1_chr16_-_30134584 NM_001040056 NM_001109891 NM_002746	-3428	-	AB385073 AY033607 AY033608 DQ399291 DQ893440 DQ896778 TSC_hg19_v1_chr16_-_30134542 BC013992 AK307995	-3506	-	TSC_hg19_v1_chr16_-_30134504 BX537897 AK091009 Z11696 M84490	-3651	-	NM_001193333 NM_007074 TSC_hg19_v1_chr16_+_30194922 BC110374	56781	+	AF495470 AK096332 TSC_hg19_v1_chr16_+_30194929 AK296207 AK314714 D44497 X89109 U34690 BC126385 BC126387	56930	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	67148	+	NM_001040056|MAPK3|5595|mitogen-activated protein kinase 3##NM_001109891|MAPK3|5595|mitogen-activated protein kinase 3##NM_002746|MAPK3|5595|mitogen-activated protein kinase 3##AY033607|MAPK3|5595|mitogen-activated protein kinase 3##AY033608|MAPK3|5595|mitogen-activated protein kinase 3##DQ399291|MAPK3|5595|mitogen-activated protein kinase 3##DQ893440|MAPK3|5595|mitogen-activated protein kinase 3##DQ896778|MAPK3|5595|mitogen-activated protein kinase 3##BC013992|MAPK3|5595|mitogen-activated protein kinase 3##AK307995|MAPK3|5595|mitogen-activated protein kinase 3##BX537897|MAPK3|5595|mitogen-activated protein kinase 3##AK091009|MAPK3|5595|mitogen-activated protein kinase 3##Z11696|MAPK3|5595|mitogen-activated protein kinase 3##M84490|MAPK3|5595|mitogen-activated protein kinase 3##NM_001193333|CORO1A|11151|coronin, actin binding protein, 1A##NM_007074|CORO1A|11151|coronin, actin binding protein, 1A##BC110374|CORO1A|11151|coronin, actin binding protein, 1A##AF495470|CORO1A|11151|coronin, actin binding protein, 1A##AK096332|CORO1A|11151|coronin, actin binding protein, 1A##AK296207|CORO1A|11151|coronin, actin binding protein, 1A##AK314714|CORO1A|11151|coronin, actin binding protein, 1A##D44497|CORO1A|11151|coronin, actin binding protein, 1A##X89109|CORO1A|11151|coronin, actin binding protein, 1A##U34690|CORO1A|11151|coronin, actin binding protein, 1A##BC126385|CORO1A|11151|coronin, actin binding protein, 1A##BC126387|CORO1A|11151|coronin, actin binding protein, 1A##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	1.788619	0.0	denovo_WM_7:-25:0.809	denovo_WM_7:-46:0.366
chr8	79419882	79420028	reg1005184.p1	8.297	+	NM_001172086 NM_001172087	-1506676	-	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	-1507546	-	AK131399 TSC_hg19_v1_chr8_+_77765961	-1654066	+	NM_006823 NM_181839 S76965	8380	+	TSC_hg19_v1_chr8_+_79578323 NM_016010 AK024711 AK313723 AF151820 BC009074 BC035905 CU679245	158365	+	J04156 BC032487 AK226000 BC047698 AK291538 NM_000880 NM_001199886 NM_001199887 NM_001199888	297693	-	NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##AK131399|ZFHX4|79776|zinc finger homeobox 4##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_016010|FAM164A|51101|family with sequence similarity 164, member A##AK024711|FAM164A|51101|family with sequence similarity 164, member A##AK313723|FAM164A|51101|family with sequence similarity 164, member A##AF151820|FAM164A|51101|family with sequence similarity 164, member A##BC009074|FAM164A|51101|family with sequence similarity 164, member A##BC035905|FAM164A|51101|family with sequence similarity 164, member A##J04156|IL7|3574|interleukin 7##BC032487|IL7|3574|interleukin 7##AK226000|IL7|3574|interleukin 7##BC047698|IL7|3574|interleukin 7##AK291538|IL7|3574|interleukin 7##NM_000880|IL7|3574|interleukin 7##NM_001199886|IL7|3574|interleukin 7##NM_001199887|IL7|3574|interleukin 7##NM_001199888|IL7|3574|interleukin 7	0.946182	0.658321	CTCF.p2:3:0.658	denovo_WM_7:-31:0.497
chr11	72099207	72099329	reg1004199.p1	8.296	+	TSC_hg19_v1_chr11_-_71955221 AK290645 NM_005169	-144033	-	BC041564 TSC_hg19_v1_chr11_-_71955201	-144066	-	Y14385 BC140853 NM_001567	-163416	+	TSC_hg19_v1_chr11_-_72145558 AK302069 CU675391 EU176435 EU176772 BC006404 NM_030813	46187	-	TSC_hg19_v1_chr11_-_72145569 AK302006 AK023214	46308	-	TSC_hg19_v1_chr11_-_72145602 AL136909 AK302158	46382	-	AK290645|PHOX2A|401|paired-like homeobox 2a##NM_005169|PHOX2A|401|paired-like homeobox 2a##BC041564|PHOX2A|401|paired-like homeobox 2a##Y14385|INPPL1|3636|inositol polyphosphate phosphatase-like 1##BC140853|INPPL1|3636|inositol polyphosphate phosphatase-like 1##NM_001567|INPPL1|3636|inositol polyphosphate phosphatase-like 1##AK302069|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##EU176435|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##EU176772|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##BC006404|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##NM_030813|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AK302006|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AK023214|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AL136909|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)##AK302158|CLPB|81570|ClpB caseinolytic peptidase B homolog (E. coli)	0.99773	0.0	denovo_WM_7:34:0.238	denovo_WM_7:35:0.238	denovo_WM_7:36:0.238	denovo_WM_7:37:0.238
chr13	113456826	113456969	reg1003139.p2	8.296	+	TSC_hg19_v1_chr13_+_113344493 NM_015205 NM_032189	-112318	+	TSC_hg19_v1_chr13_-_113344130 AK057085	-112791	-	AK129953 NM_207440	-155540	+	TSC_hg19_v1_chr13_+_113622764 AB002360	165888	+	TSC_hg19_v1_chr13_+_113623680 AK315969 NM_001112732 AK295670	166698	+	TSC_hg19_v1_chr13_+_113633625 AK307867	176742	+	NM_015205|ATP11A|23250|ATPase, class VI, type 11A##NM_032189|ATP11A|23250|ATPase, class VI, type 11A##AK057085|LOC440149|440149|uncharacterized LOC440149##AK129953|C13orf35|400165|chromosome 13 open reading frame 35##NM_207440|C13orf35|400165|chromosome 13 open reading frame 35##AB002360|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK315969|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##NM_001112732|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK295670|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK307867|MCF2L|23263|MCF.2 cell line derived transforming sequence-like	0.99785	0.0	
chr2	199778659	199778800	reg1003427.p2	8.296	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	-1109359	+	NM_197970 AK302817	-1127743	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-1128689	-	TSC_hg19_v1_chr2_-_200213802 AK025127	435121	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	542073	-	TSC_hg19_v1_chr2_-_200322238 AJ438951	543521	-	AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2##AJ438951|SATB2|23314|SATB homeobox 2	0.996717	0.0	denovo_WM_7:5:0.986
chr5	140018750	140018915	reg1003667.p2	8.296	+	NM_001040021 NM_001174104 NM_001174105	-5547	-	NM_000591	-5798	-	M86511 TSC_hg19_v1_chr5_-_140012761 BC010507 AK313277 X13334	-6063	-	TSC_hg19_v1_chr5_+_140019047 NM_018502 AK301502 AK308722 AK097088 AK289495 BC001910	216	+	CR457016 TSC_hg19_v1_chr5_-_140027216 BC003674	8365	-	TSC_hg19_v1_chr5_-_140027241 AF077029 AK311095 NM_001185012 NM_002488	8468	-	NM_001040021|CD14|929|CD14 molecule##NM_001174104|CD14|929|CD14 molecule##NM_001174105|CD14|929|CD14 molecule##NM_000591|CD14|929|CD14 molecule##M86511|CD14|929|CD14 molecule##BC010507|CD14|929|CD14 molecule##AK313277|CD14|929|CD14 molecule##X13334|CD14|929|CD14 molecule##NM_018502|TMCO6|55374|transmembrane and coiled-coil domains 6##AK301502|TMCO6|55374|transmembrane and coiled-coil domains 6##AK308722|TMCO6|55374|transmembrane and coiled-coil domains 6##AK097088|TMCO6|55374|transmembrane and coiled-coil domains 6##AK289495|TMCO6|55374|transmembrane and coiled-coil domains 6##BC001910|TMCO6|55374|transmembrane and coiled-coil domains 6##CR457016|NDUFA2|4695|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa##BC003674|NDUFA2|4695|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa##AF077029|NDUFA2|4695|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa##NM_001185012|NDUFA2|4695|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa##NM_002488|NDUFA2|4695|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa	0.0	0.0	
chr7	37855749	37855903	reg1003208.p1	8.296	+	AB529245 AY288420 BC120951 BC120952 NM_181791	-75831	+	BC043356 TSC_hg19_v1_chr7_+_37723380	-132444	+	NM_001206480	-366932	-	BC036816 NM_016616	32372	+	AF026692 BC047684 BC058911 AK313029 TSC_hg19_v1_chr7_-_37956420 AK303977 AK302357	100585	-	TSC_hg19_v1_chr7_-_37956526 BC032828 NM_003014	100694	-	AY288420|GPR141|353345|G protein-coupled receptor 141##BC120951|GPR141|353345|G protein-coupled receptor 141##BC120952|GPR141|353345|G protein-coupled receptor 141##NM_181791|GPR141|353345|G protein-coupled receptor 141##NM_001206480|ELMO1|9844|engulfment and cell motility 1##BC036816|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##NM_016616|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##AF026692|SFRP4|6424|secreted frizzled-related protein 4##BC047684|SFRP4|6424|secreted frizzled-related protein 4##BC058911|SFRP4|6424|secreted frizzled-related protein 4##AK313029|SFRP4|6424|secreted frizzled-related protein 4##AK303977|SFRP4|6424|secreted frizzled-related protein 4##AK302357|SFRP4|6424|secreted frizzled-related protein 4##BC032828|SFRP4|6424|secreted frizzled-related protein 4##NM_003014|SFRP4|6424|secreted frizzled-related protein 4	0.449789	0.0	denovo_WM_7:23:0.407
chr10	17248210	17248345	reg1003728.p1	8.295	+	NM_004412	-4208	-	TSC_hg19_v1_chr10_-_17243660 CR450316 AF045888 AK291417 AF012128 BC047733 AK303428 BX537961 AJ223333 AK299027	-4544	-	AF034611 NM_001081 TSC_hg19_v1_chr10_-_17171878	-76444	-	NM_003380	21980	+	BC066956 TSC_hg19_v1_chr10_+_17270601	22259	+	AK056766 AK091813 AK097336 AK098444 AK222507 AK222602 TSC_hg19_v1_chr10_+_17271276	22999	+	NM_004412|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##CR450316|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF045888|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK291417|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF012128|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BC047733|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK303428|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BX537961|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AJ223333|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK299027|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF034611|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_001081|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_003380|VIM|7431|vimentin##BC066956|VIM|7431|vimentin##AK056766|VIM|7431|vimentin##AK091813|VIM|7431|vimentin##AK097336|VIM|7431|vimentin##AK098444|VIM|7431|vimentin##AK222507|VIM|7431|vimentin##AK222602|VIM|7431|vimentin	0.0	0.0	
chr13	24135420	24135579	reg1003502.p1	8.294	+	TSC_hg19_v1_chr13_-_24007842 NM_014363	-127659	-	TSC_hg19_v1_chr13_-_23949652 AK125458	-185849	-	NM_000231 U34976 BC109321 AK290620 AK316579 BC074777 BC074778	-380384	+	TSC_hg19_v1_chr13_+_24144402 NM_001204459 NM_148957	8956	+	TSC_hg19_v1_chr13_+_24153521 BC035796 NM_001204458 NM_018647 AY358888 AF167555	18033	+	TSC_hg19_v1_chr13_+_24463019 BC015452 BC073902 NM_001014442	327517	+	NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##AK125458|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##NM_000231|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##U34976|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC109321|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK290620|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK316579|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074777|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074778|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##NM_001204459|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_148957|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##BC035796|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204458|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_018647|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AY358888|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AF167555|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##BC015452|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC073902|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##NM_001014442|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)	0.0	0.0	
chr14	62177732	62177891	reg1003215.p1	8.294	+	FJ790247 NM_001243084	-13472	+	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	-15621	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-389284	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	51308	+	AJ617628 NM_031914 BC117363 BC143598 HQ258344 AB102949	284827	+	TSC_hg19_v1_chr14_+_62584125 BX248751	406347	+	FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##AJ617628|SYT16|83851|synaptotagmin XVI##NM_031914|SYT16|83851|synaptotagmin XVI##BC117363|SYT16|83851|synaptotagmin XVI##BC143598|SYT16|83851|synaptotagmin XVI##HQ258344|SYT16|83851|synaptotagmin XVI##AB102949|SYT16|83851|synaptotagmin XVI##BX248751|FLJ43390|646113|uncharacterized LOC646113	0.998167	0.0	
chr1	226315279	226315411	reg1003039.p1	8.292	+	TSC_hg19_v1_chr1_+_226271319 BC032899	-43985	+	TSC_hg19_v1_chr1_+_226250433 BC081560 BC081561	-64912	+	TSC_hg19_v1_chr1_+_226250421 AK291102 AK293541 BC029405 BC067757 BC095447 M11354 BC066901	-64919	+	BC039575 TSC_hg19_v1_chr1_-_226374400	59055	-	AY150218 TSC_hg19_v1_chr1_-_226374401 BC045533 BC060792 NM_022735 AK025520 AK314468 AB043587	59072	-	BC111974 BC113441 BC143784 TSC_hg19_v1_chr1_+_226411364 AF211891 NM_031944	96005	+	BC081560|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC081561|H3F3A|3020|H3 histone, family 3A##AK291102|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##AK293541|H3F3A|3020|H3 histone, family 3A##BC029405|H3F3A|3020|H3 histone, family 3A##BC067757|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC095447|H3F3A|3020|H3 histone, family 3A##M11354|H3F3A|3020|H3 histone, family 3A##BC066901|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC039575|ACBD3|64746|acyl-CoA binding domain containing 3##AY150218|ACBD3|64746|acyl-CoA binding domain containing 3##BC045533|ACBD3|64746|acyl-CoA binding domain containing 3##BC060792|ACBD3|64746|acyl-CoA binding domain containing 3##NM_022735|ACBD3|64746|acyl-CoA binding domain containing 3##AK025520|ACBD3|64746|acyl-CoA binding domain containing 3##AK314468|ACBD3|64746|acyl-CoA binding domain containing 3##AB043587|ACBD3|64746|acyl-CoA binding domain containing 3##BC111974|MIXL1|83881|Mix paired-like homeobox##BC113441|MIXL1|83881|Mix paired-like homeobox##BC143784|MIXL1|83881|Mix paired-like homeobox##AF211891|MIXL1|83881|Mix paired-like homeobox##NM_031944|MIXL1|83881|Mix paired-like homeobox	1.565682	0.0	denovo_WM_7:-11:0.541	denovo_WM_7:-26:0.818
chr12	58488934	58489041	reg1003937.p1	8.292	+	BC012776 NM_033276 BC115381 BC115382 TSC_hg19_v1_chr12_+_58335454	-153527	+	TSC_hg19_v1_chr12_+_58335326 BC033881 AF078164	-153651	+	NM_005730	-248241	-	AK301162 AY358295 NM_001136051	824328	-	AY505340 BC126169 BC126171 BC143960 AY358288 NM_153377 TSC_hg19_v1_chr12_-_59314272	825190	-	AK292857 TSC_hg19_v1_chr12_-_59314301	825315	-	BC012776|XRCC6BP1|91419|XRCC6 binding protein 1##NM_033276|XRCC6BP1|91419|XRCC6 binding protein 1##BC115381|XRCC6BP1|91419|XRCC6 binding protein 1##BC115382|XRCC6BP1|91419|XRCC6 binding protein 1##BC033881|XRCC6BP1|91419|XRCC6 binding protein 1##AF078164|XRCC6BP1|91419|XRCC6 binding protein 1##NM_005730|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK301162|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY358295|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##NM_001136051|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY505340|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC126169|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC126171|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC143960|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY358288|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##NM_153377|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AK292857|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3	0.99842	0.0	denovo_WM_7:12:0.859
chr7	101927774	101927888	reg1003280.p1	8.292	+	M74099 NM_181552	-466950	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-468622	+	BC002778 NM_138403	-655256	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	566	+	TSC_hg19_v1_chr7_+_101928431 AB000520	612	+	NM_001146210	69057	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.996688	0.0	denovo_WM_7:-36:0.985
chr14	59422266	59422446	reg1003932.p2	8.291	+	TSC_hg19_v1_chr14_+_59104741 NM_001079520 NM_016651	-317610	+	AK302579 NM_001244193 AK310356 AK302718	-515930	+	NM_014749 BC066647	-527625	+	TSC_hg19_v1_chr14_+_59655450 BX648383 BC064999 NM_014992 BC038428 AK291790 AK021890 BX247986	233048	+	TSC_hg19_v1_chr14_-_59931852 DQ893361 DQ896680 AY288418 M76676	509566	-	TSC_hg19_v1_chr14_-_59932051 BC032831 NM_022571	509700	-	NM_001079520|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##NM_016651|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##AK302579|KIAA0586|9786|KIAA0586##NM_001244193|KIAA0586|9786|KIAA0586##AK310356|KIAA0586|9786|KIAA0586##AK302718|KIAA0586|9786|KIAA0586##NM_014749|KIAA0586|9786|KIAA0586##BC066647|KIAA0586|9786|KIAA0586##BC064999|DAAM1|23002|dishevelled associated activator of morphogenesis 1##NM_014992|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BC038428|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK291790|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK021890|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BX247986|DAAM1|23002|dishevelled associated activator of morphogenesis 1##DQ893361|GPR135|64582|G protein-coupled receptor 135##DQ896680|GPR135|64582|G protein-coupled receptor 135##AY288418|GPR135|64582|G protein-coupled receptor 135##M76676|GPR135|64582|G protein-coupled receptor 135##BC032831|GPR135|64582|G protein-coupled receptor 135##NM_022571|GPR135|64582|G protein-coupled receptor 135	0.379507	0.0	denovo_WM_7:7:0.332
chr2	192543033	192543213	reg1002991.p3	8.291	+	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	-261	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-433025	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-526816	-	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	168615	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	168848	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	516191	-	NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2	2.735858	0.0	denovo_WM_7:14:0.326	denovo_WM_7:15:0.262	denovo_WM_7:31:0.599
chr15	83475015	83475186	reg1003707.p1	8.290	+	BC130569 BC144175 BC144181 NM_001007122 AK122875 AL833295	-288	-	TSC_hg19_v1_chr15_+_83419326 BX538250	-55783	+	TSC_hg19_v1_chr15_-_83419208 BC041394	-55901	-	NM_001080435	2872	+	TSC_hg19_v1_chr15_+_83478391 AK126887 AB075851	3271	+	AF081530 TSC_hg19_v1_chr15_-_83621443 AK292772 BC012109 NM_004839 NM_199330	146322	-	BC130569|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144175|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144181|FSD2|123722|fibronectin type III and SPRY domain containing 2##NM_001007122|FSD2|123722|fibronectin type III and SPRY domain containing 2##AK122875|FSD2|123722|fibronectin type III and SPRY domain containing 2##AL833295|FSD2|123722|fibronectin type III and SPRY domain containing 2##NM_001080435|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AK126887|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AB075851|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AF081530|HOMER2|9455|homer homolog 2 (Drosophila)##AK292772|HOMER2|9455|homer homolog 2 (Drosophila)##BC012109|HOMER2|9455|homer homolog 2 (Drosophila)##NM_004839|HOMER2|9455|homer homolog 2 (Drosophila)##NM_199330|HOMER2|9455|homer homolog 2 (Drosophila)	0.998768	0.0	denovo_WM_7:43:0.518	denovo_WM_7:44:0.462
chr19	56616713	56616888	reg1004204.p2	8.290	+	AB527195 AY054986 AY154460 NM_153447	-105710	+	NM_176811 AB527377 AY154463	-157568	+	AB527194 AY154468 NM_176810	-173112	-	TSC_hg19_v1_chr19_-_56632629 BC037737	15814	-	TSC_hg19_v1_chr19_-_56632646 BC012495 BC077728 NM_001002836	15846	-	TSC_hg19_v1_chr19_+_56652664 NM_001253792 NM_018337 AL834130 AK223408	35805	+	AY054986|NLRP5|126206|NLR family, pyrin domain containing 5##AY154460|NLRP5|126206|NLR family, pyrin domain containing 5##NM_153447|NLRP5|126206|NLR family, pyrin domain containing 5##NM_176811|NLRP8|126205|NLR family, pyrin domain containing 8##AY154463|NLRP8|126205|NLR family, pyrin domain containing 8##AY154468|NLRP13|126204|NLR family, pyrin domain containing 13##NM_176810|NLRP13|126204|NLR family, pyrin domain containing 13##BC037737|ZNF787|126208|zinc finger protein 787##BC012495|ZNF787|126208|zinc finger protein 787##BC077728|ZNF787|126208|zinc finger protein 787##NM_001002836|ZNF787|126208|zinc finger protein 787##NM_001253792|ZNF444|55311|zinc finger protein 444##NM_018337|ZNF444|55311|zinc finger protein 444##AL834130|ZNF444|55311|zinc finger protein 444##AK223408|ZNF444|55311|zinc finger protein 444	0.0	0.0	
chr8	72740056	72740156	reg1000119.p3	8.289	+	BC035138 BC048982 TSC_hg19_v1_chr8_-_72459928	-280197	-	AJ000098 NM_000503 TSC_hg19_v1_chr8_-_72274481	-465631	-	TSC_hg19_v1_chr8_-_72274302 AK307379	-465813	-	TSC_hg19_v1_chr8_+_72756330 AK123315 BC094782	16168	+	TSC_hg19_v1_chr8_+_72756336 BX647470	16234	+	TSC_hg19_v1_chr8_-_72756449 AF087036 AB463900 BT007169	16333	-	AJ000098|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_000503|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK307379|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK123315|LOC100132891|100132891|uncharacterized LOC100132891##AF087036|MSC|9242|musculin##BT007169|MSC|9242|musculin	0.656172	0.0	denovo_WM_7:-25:0.490
chr17	41446768	41446874	reg1003265.p2	8.288	+	TSC_hg19_v1_chr17_+_41363905 AK056132 AK290387 AK299974 AK301571 NM_145041	-82942	+	TSC_hg19_v1_chr17_+_41323230 AK299328 AK290005 AK297425 BC012591 X76952 NM_005899 BC009808 AY450308	-123599	+	TSC_hg19_v1_chr17_+_41322538 D30756 NM_031862 AF227189 NM_031858	-124328	+	AL832479 TSC_hg19_v1_chr17_-_41465694 AK123585 AK311685	18869	-	TSC_hg19_v1_chr17_+_41476360 NM_001661 AK314951 BC000043 AB060692 L38490	29546	+	AK294046 TSC_hg19_v1_chr17_+_41561351 BC020697 AK303319 D50487 NM_004941 AK291664	114476	+	AK056132|TMEM106A|113277|transmembrane protein 106A##AK290387|TMEM106A|113277|transmembrane protein 106A##AK299974|TMEM106A|113277|transmembrane protein 106A##AK301571|TMEM106A|113277|transmembrane protein 106A##NM_145041|TMEM106A|113277|transmembrane protein 106A##AK299328|NBR1|4077|neighbor of BRCA1 gene 1##AK290005|NBR1|4077|neighbor of BRCA1 gene 1##AK297425|NBR1|4077|neighbor of BRCA1 gene 1##X76952|NBR1|4077|neighbor of BRCA1 gene 1##NM_005899|NBR1|4077|neighbor of BRCA1 gene 1##BC009808|NBR1|4077|neighbor of BRCA1 gene 1##AY450308|NBR1|4077|neighbor of BRCA1 gene 1##D30756|NBR1|4077|neighbor of BRCA1 gene 1##NM_031862|NBR1|4077|neighbor of BRCA1 gene 1##AF227189|NBR1|4077|neighbor of BRCA1 gene 1##NM_031858|NBR1|4077|neighbor of BRCA1 gene 1##AL832479|LOC100130581|100130581|uncharacterized LOC100130581##AK123585|LOC100130581|100130581|uncharacterized LOC100130581##AK311685|LOC100130581|100130581|uncharacterized LOC100130581##NM_001661|ARL4D|379|ADP-ribosylation factor-like 4D##AK314951|ARL4D|379|ADP-ribosylation factor-like 4D##BC000043|ARL4D|379|ADP-ribosylation factor-like 4D##AB060692|ARL4D|379|ADP-ribosylation factor-like 4D##L38490|ARL4D|379|ADP-ribosylation factor-like 4D##AK294046|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##BC020697|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK303319|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##D50487|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##NM_004941|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK291664|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8	0.995697	0.0	denovo_WM_7:18:0.983
chr6	88412155	88412295	reg1003526.p1	8.288	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-237	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-277	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-316	-	BC029488 NM_030960 AF203447	345305	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	442811	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	463541	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.397506	0.0	denovo_WM_7:1:0.349
chr11	128700264	128700402	reg1003786.p1	8.287	+	TSC_hg19_v1_chr11_+_128564132 AB385119 AY029368 CU674822 DQ892582 DQ896858	-136191	+	TSC_hg19_v1_chr11_+_128563997 X67001 S45205 BC010115 BC001670	-136278	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	-136353	+	BC136360 BC136361 BC074752 NM_000220 U12541 AK314267 AK290797	12045	-	U12544 U12545 AK308032 U12543 U03884 AK308033 BC063109 NM_153764 NM_153765 NM_153766 NM_153767 U12542	36866	-	AK312837 NM_000890 D50134 BC069386 BC069482 BC069499 BC069571 U39195	61007	+	AY029368|FLI1|2313|Friend leukemia virus integration 1##DQ892582|FLI1|2313|Friend leukemia virus integration 1##DQ896858|FLI1|2313|Friend leukemia virus integration 1##X67001|FLI1|2313|Friend leukemia virus integration 1##S45205|FLI1|2313|Friend leukemia virus integration 1##BC010115|FLI1|2313|Friend leukemia virus integration 1##BC001670|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1##BC136360|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC136361|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC074752|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_000220|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12541|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK314267|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK290797|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12544|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12545|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308032|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12543|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U03884|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308033|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC063109|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153764|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153765|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153766|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153767|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12542|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK312837|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##NM_000890|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##D50134|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069386|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069482|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069499|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069571|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##U39195|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5	0.999294	0.0	denovo_WM_7:-34:0.805
chr13	102360633	102360770	reg1003311.p1	8.286	+	TSC_hg19_v1_chr13_+_102104985 AF072752 NM_004791 AK095875 AB008375 AK297744 BC036788 AK291340 AK308194	-255706	+	TSC_hg19_v1_chr13_-_102068838 BC028390	-291861	-	AY141972 AK094669 BC012128 NM_052867 TSC_hg19_v1_chr13_-_102068817	-291940	-	NM_004115 U66200	208293	-	AB590819 BC100920 BC100921 BC100922 AY188178 NM_175929	693374	-	NM_003291 TSC_hg19_v1_chr13_+_103249354 BC039905 M73047 AK304313 BC024905 CU691800	888635	+	AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC028390|NALCN|259232|sodium leak channel, non-selective##AY141972|NALCN|259232|sodium leak channel, non-selective##AK094669|NALCN|259232|sodium leak channel, non-selective##BC012128|NALCN|259232|sodium leak channel, non-selective##NM_052867|NALCN|259232|sodium leak channel, non-selective##NM_004115|FGF14|2259|fibroblast growth factor 14##U66200|FGF14|2259|fibroblast growth factor 14##BC100920|FGF14|2259|fibroblast growth factor 14##BC100921|FGF14|2259|fibroblast growth factor 14##BC100922|FGF14|2259|fibroblast growth factor 14##AY188178|FGF14|2259|fibroblast growth factor 14##NM_175929|FGF14|2259|fibroblast growth factor 14##NM_003291|TPP2|7174|tripeptidyl peptidase II##BC039905|TPP2|7174|tripeptidyl peptidase II##M73047|TPP2|7174|tripeptidyl peptidase II##AK304313|TPP2|7174|tripeptidyl peptidase II##BC024905|TPP2|7174|tripeptidyl peptidase II	0.0	0.0	
chr6	15247595	15247744	reg1003656.p1	8.286	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-1257	+	TSC_hg19_v1_chr6_+_15245702 AK302624	-1952	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-1129647	+	BC033996 TSC_hg19_v1_chr6_-_15248900	1232	-	TSC_hg19_v1_chr6_+_15249113 AK303610	1444	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	415508	-	AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1	1.905453	0.0	denovo_WM_7:-6:0.470	denovo_WM_7:-7:0.527	denovo_WM_7:101:0.695
chr19	59005383	59005563	reg1003998.p1	8.285	+	AY280800 TSC_hg19_v1_chr19_+_58987792 AK000633 AY279351 NM_017908 BC017206 AK026153	-17690	+	AK092341 TSC_hg19_v1_chr19_+_58978664	-26806	+	TSC_hg19_v1_chr19_+_58978445 NM_014347 BC007717 AF060503	-27045	+	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	17904	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	25480	-	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	25715	-	AY280800|ZNF446|55663|zinc finger protein 446##AK000633|ZNF446|55663|zinc finger protein 446##AY279351|ZNF446|55663|zinc finger protein 446##NM_017908|ZNF446|55663|zinc finger protein 446##BC017206|ZNF446|55663|zinc finger protein 446##AK026153|ZNF446|55663|zinc finger protein 446##AK092341|ZNF324|25799|zinc finger protein 324##NM_014347|ZNF324|25799|zinc finger protein 324##BC007717|ZNF324|25799|zinc finger protein 324##AF060503|ZNF324|25799|zinc finger protein 324##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45	0.99773	0.0	denovo_WM_7:-12:0.238	denovo_WM_7:-13:0.238	denovo_WM_7:-14:0.238	denovo_WM_7:-15:0.238
chr11	20110505	20110654	reg1004784.p1	8.283	+	AK290458 TSC_hg19_v1_chr11_+_20070637	-39956	+	TSC_hg19_v1_chr11_+_20049136 AK307574	-61447	+	TSC_hg19_v1_chr11_+_20044396 AK298346 AJ488208	-66191	+	NM_001029865	71290	-	NM_006410 TSC_hg19_v1_chr11_+_20385245 NM_001098521	274663	+	TSC_hg19_v1_chr11_+_20385268 AK292092 NM_001098520	274702	+	AK290458|NAV2|89797|neuron navigator 2##AK307574|NAV2|89797|neuron navigator 2##AK298346|NAV2|89797|neuron navigator 2##AJ488208|NAV2|89797|neuron navigator 2##NM_001029865|DBX1|120237|developing brain homeobox 1##NM_006410|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098521|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK292092|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098520|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa	0.993926	0.0	denovo_WM_7:-20:0.687
chr2	217547338	217547436	reg1003460.p1	8.283	+	L27560 AF147308 TSC_hg19_v1_chr2_-_217540846	-6603	-	TSC_hg19_v1_chr2_+_217498216 DQ893450 EU176752	-49089	+	TSC_hg19_v1_chr2_+_217498142 NM_000597 X16302 BC071967 AB209509 BC004312 BC009902 BC012769 M35410	-49251	+	AB463782 BT019706 BT019707 CR456809 M65062 AK314992 M62782 TSC_hg19_v1_chr2_-_217559633	12179	-	AF055033 AK309609 TSC_hg19_v1_chr2_-_217560271 NM_000599	12873	-	BC029516 NM_003284	177394	-	L27560|IGFBP5|3488|insulin-like growth factor binding protein 5##AF147308|IGFBP5|3488|insulin-like growth factor binding protein 5##DQ893450|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##EU176752|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##NM_000597|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##X16302|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC071967|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##AB209509|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC004312|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC009902|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC012769|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##M35410|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BT019706|IGFBP5|3488|insulin-like growth factor binding protein 5##BT019707|IGFBP5|3488|insulin-like growth factor binding protein 5##CR456809|IGFBP5|3488|insulin-like growth factor binding protein 5##M65062|IGFBP5|3488|insulin-like growth factor binding protein 5##AK314992|IGFBP5|3488|insulin-like growth factor binding protein 5##M62782|IGFBP5|3488|insulin-like growth factor binding protein 5##AF055033|IGFBP5|3488|insulin-like growth factor binding protein 5##NM_000599|IGFBP5|3488|insulin-like growth factor binding protein 5##BC029516|TNP1|7141|transition protein 1 (during histone to protamine replacement)##NM_003284|TNP1|7141|transition protein 1 (during histone to protamine replacement)	0.998024	0.934214	CTCF.p2:-14:0.934	denovo_WM_7:52:0.331	denovo_WM_7:55:0.523
chr15	43938848	43938963	reg1003407.p1	8.282	+	AK308370 BC129931 NM_153700	-27927	-	NM_020990 AK311698 AK316124	-53633	+	BC050263 BX538022 BX647814 AK307438 NM_001130858 NM_001130859 NM_001190214	-56487	-	BC028728 NM_054020 NM_172095 NM_172097 AK122607 BC064387 BX648099 TSC_hg19_v1_chr15_-_43941088	2157	-	NM_001015001 AK311698 AK316124	46199	+	TSC_hg19_v1_chr15_+_44038635 NM_005313 AK075481 AK293249 BC036000 Z49835 BC071878 BC014433	99660	+	AK308370|STRC|161497|stereocilin##BC129931|STRC|161497|stereocilin##NM_153700|STRC|161497|stereocilin##NM_020990|CKMT1B|1159|creatine kinase, mitochondrial 1B##AK316124|CKMT1A|548596|creatine kinase, mitochondrial 1A##BC050263|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##BX538022|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##BX647814|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##AK307438|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_001130858|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_001130859|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##NM_001190214|PPIP5K1|9677|diphosphoinositol pentakisphosphate kinase 1##BC028728|CATSPER2|117155|cation channel, sperm associated 2##NM_054020|CATSPER2|117155|cation channel, sperm associated 2##NM_172095|CATSPER2|117155|cation channel, sperm associated 2##NM_172097|CATSPER2|117155|cation channel, sperm associated 2##AK122607|CATSPER2|117155|cation channel, sperm associated 2##BC064387|CATSPER2|117155|cation channel, sperm associated 2##BX648099|CATSPER2|117155|cation channel, sperm associated 2##NM_001015001|CKMT1A|548596|creatine kinase, mitochondrial 1A##AK316124|CKMT1A|548596|creatine kinase, mitochondrial 1A##NM_005313|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075481|PDIA3|2923|protein disulfide isomerase family A, member 3##AK293249|PDIA3|2923|protein disulfide isomerase family A, member 3##BC036000|PDIA3|2923|protein disulfide isomerase family A, member 3##Z49835|PDIA3|2923|protein disulfide isomerase family A, member 3##BC071878|PDIA3|2923|protein disulfide isomerase family A, member 3##BC014433|PDIA3|2923|protein disulfide isomerase family A, member 3	0.961538	0.0	denovo_WM_7:18:0.650
chr15	67006628	67006777	reg1003942.p1	8.282	+	NM_001142861 U59914	-5773	+	BC052569 BC012986 AF037469 AF043640 AM909653 TSC_hg19_v1_chr15_+_66995671	-11143	+	AF035528 TSC_hg19_v1_chr15_+_66994671 NM_005585	-12028	+	TSC_hg19_v1_chr15_+_67358179 AK290881	351473	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	351699	+	NM_001145102 AK316017	411421	+	NM_001142861|SMAD6|4091|SMAD family member 6##U59914|SMAD6|4091|SMAD family member 6##BC052569|SMAD6|4091|SMAD family member 6##BC012986|SMAD6|4091|SMAD family member 6##AF037469|SMAD6|4091|SMAD family member 6##AF043640|SMAD6|4091|SMAD family member 6##AM909653|SMAD6|4091|SMAD family member 6##AF035528|SMAD6|4091|SMAD family member 6##NM_005585|SMAD6|4091|SMAD family member 6##AK290881|SMAD3|4088|SMAD family member 3##NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3	0.037233	0.0	
chr10	30816575	30816755	reg1003673.p1	8.281	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	-93544	+	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	-93726	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-178432	-	AF139543 BC066294 NM_183058	101970	-	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	471787	-	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	504156	-	AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438	0.995735	0.0	
chr1	10753484	10753663	reg1003226.p1	8.280	+	TSC_hg19_v1_chr1_+_10535017 AK293684 AK307416 NM_004565 AK298136 AK002194 BC006327 AK310726 BC017848 BC054017 AB017546 AF045186 AK313046 AB527589 CR450321 CR542083 CU675355 DQ892775 DQ895905	-218562	+	TSC_hg19_v1_chr1_-_10532605 NM_004401 NM_213566	-220951	-	TSC_hg19_v1_chr1_-_10532555 AB590590 BT006980 CU675773 BC000037 AF103799 AF087573 BC007721 AK313317 AK222546 U91985 BC007112	-221018	-	TSC_hg19_v1_chr1_-_10754567 AK311700 AK293839	978	-	DQ217660 AK092289 AX747454 NM_001079843 NM_017766	103132	-	NM_001170754	288520	-	AK293684|PEX14|5195|peroxisomal biogenesis factor 14##AK307416|PEX14|5195|peroxisomal biogenesis factor 14##NM_004565|PEX14|5195|peroxisomal biogenesis factor 14##AK298136|PEX14|5195|peroxisomal biogenesis factor 14##AK002194|PEX14|5195|peroxisomal biogenesis factor 14##BC006327|PEX14|5195|peroxisomal biogenesis factor 14##AK310726|PEX14|5195|peroxisomal biogenesis factor 14##BC017848|PEX14|5195|peroxisomal biogenesis factor 14##BC054017|PEX14|5195|peroxisomal biogenesis factor 14##AB017546|PEX14|5195|peroxisomal biogenesis factor 14##AF045186|PEX14|5195|peroxisomal biogenesis factor 14##AK313046|PEX14|5195|peroxisomal biogenesis factor 14##CR450321|PEX14|5195|peroxisomal biogenesis factor 14##CR542083|PEX14|5195|peroxisomal biogenesis factor 14##DQ892775|PEX14|5195|peroxisomal biogenesis factor 14##DQ895905|PEX14|5195|peroxisomal biogenesis factor 14##NM_004401|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##NM_213566|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##BT006980|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##BC000037|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##AF103799|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##AF087573|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##BC007721|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##AK313317|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##AK222546|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##U91985|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##BC007112|DFFA|1676|DNA fragmentation factor, 45kDa, alpha polypeptide##AK311700|CASZ1|54897|castor zinc finger 1##AK293839|CASZ1|54897|castor zinc finger 1##DQ217660|CASZ1|54897|castor zinc finger 1##AK092289|CASZ1|54897|castor zinc finger 1##NM_001079843|CASZ1|54897|castor zinc finger 1##NM_017766|CASZ1|54897|castor zinc finger 1##NM_001170754|C1orf127|148345|chromosome 1 open reading frame 127	2.688139	0.0	denovo_WM_7:0:0.404	denovo_WM_7:1:0.395	denovo_WM_7:-13:0.331	denovo_WM_7:-14:0.420	denovo_WM_7:-66:0.332	denovo_WM_7:-67:0.500
chr9	93686423	93686596	reg1003421.p2	8.280	+	NM_001174167 X73568	-96776	+	TSC_hg19_v1_chr9_+_93564206 NM_001174168 BC011399	-122294	+	TSC_hg19_v1_chr9_+_93564100 AK290927	-122394	+	TSC_hg19_v1_chr9_-_94124185 AB528075 AM393420 CU676666 DQ892036 DQ895227 X79888 AK302453	437661	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	437690	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	499535	-	NM_001174167|SYK|6850|spleen tyrosine kinase##X73568|SYK|6850|spleen tyrosine kinase##NM_001174168|SYK|6850|spleen tyrosine kinase##BC011399|SYK|6850|spleen tyrosine kinase##AK290927|SYK|6850|spleen tyrosine kinase##AM393420|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ892036|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ895227|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##X79888|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK302453|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated	0.0	0.0	
chr3	5049692	5049811	reg1003572.p1	8.279	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-28397	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	-28570	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	-28635	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	114204	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	114340	+	TSC_hg19_v1_chr3_+_5229344 AK298511	179576	+	AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	0.999352	0.0	denovo_WM_7:-11:0.821
chrX	118635093	118635216	reg1003521.p1	8.279	+	TSC_hg19_v1_chrX_+_118602407 BC068199 J02683 BC056160 CU691128	-32720	+	NM_001152 TSC_hg19_v1_chrX_+_118602390 AK315292	-32778	+	TSC_hg19_v1_chrX_+_118533353 AK091304 AK303932 AX746905 AK292035 CU676444 AL590525	-101748	+	CU692786 TSC_hg19_v1_chrX_-_118699348 AK096297 BC023506 AK026618 AK298877 NM_001170569	64190	-	TSC_hg19_v1_chrX_-_118699373 NM_001170570 NM_022101	64230	-	TSC_hg19_v1_chrX_+_118708527 AK301675 NM_003336 NM_181762 D28459 AK313092 AK223045 AK297696 AK223064	73351	+	BC068199|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##J02683|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##BC056160|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##NM_001152|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK315292|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK091304|SLC25A43|203427|solute carrier family 25, member 43##AK303932|SLC25A43|203427|solute carrier family 25, member 43##AK292035|SLC25A43|203427|solute carrier family 25, member 43##AL590525|SLC25A43|203427|solute carrier family 25, member 43##AK096297|CXorf56|63932|chromosome X open reading frame 56##BC023506|CXorf56|63932|chromosome X open reading frame 56##AK026618|CXorf56|63932|chromosome X open reading frame 56##AK298877|CXorf56|63932|chromosome X open reading frame 56##NM_001170569|CXorf56|63932|chromosome X open reading frame 56##NM_001170570|CXorf56|63932|chromosome X open reading frame 56##NM_022101|CXorf56|63932|chromosome X open reading frame 56##AK301675|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_003336|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181762|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D28459|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK313092|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223045|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK297696|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223064|UBE2A|7319|ubiquitin-conjugating enzyme E2A	0.991743	0.0	denovo_WM_7:45:0.331	denovo_WM_7:46:0.331	denovo_WM_7:47:0.331
chr10	26737785	26737905	reg1003541.p2	8.278	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-10139	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-10177	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-10528	+	AK096048 TSC_hg19_v1_chr10_-_26986612	248739	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	248801	+	TSC_hg19_v1_chr10_-_27057776 AK315914	319972	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	0.811922	0.036555	denovo_WM_7:0:0.319	denovo_WM_7:0:0.382
chr19	47539041	47539187	reg1003153.p2	8.278	+	AB054002 NM_002517 U77968	-14903	+	TSC_hg19_v1_chr19_+_47523068 BC039016	-16038	+	AB051509 AF159851 BC131565 BC150257 NM_004491	-117182	+	AK000519 NM_017854 TSC_hg19_v1_chr19_-_47551883 BC002907	12782	-	AK125279 TSC_hg19_v1_chr19_-_47615487	76372	-	TSC_hg19_v1_chr19_-_47615825 AB384098	76709	-	AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##AK000519|TMEM160|54958|transmembrane protein 160##NM_017854|TMEM160|54958|transmembrane protein 160##BC002907|TMEM160|54958|transmembrane protein 160##AK125279|ZC3H4|23211|zinc finger CCCH-type containing 4	0.986443	0.304769	denovo_WM_7:-25:0.262	denovo_WM_7:-28:0.315	CTCF.p2:107:0.305
chr5	171541997	171542151	reg1003144.p1	8.278	+	BC026213 NM_012300 NM_033644 NM_033645	-108198	-	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	-108430	-	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	-108546	-	AB015718 TSC_hg19_v1_chr5_-_171615170	73064	-	AK307943 TSC_hg19_v1_chr5_-_171615203	73129	-	TSC_hg19_v1_chr5_-_171615241 BC070077 AK313350	73199	-	BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11##AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##AB015718|STK10|6793|serine/threonine kinase 10##AK307943|STK10|6793|serine/threonine kinase 10##BC070077|STK10|6793|serine/threonine kinase 10##AK313350|STK10|6793|serine/threonine kinase 10	0.0	0.0	
chr12	111175627	111175807	reg1003173.p2	8.276	+	AK293543 NM_001040107	-48118	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	-48759	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-123792	+	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	4829	-	TSC_hg19_v1_chr12_-_111180641 X74008 BC014073	4939	-	TSC_hg19_v1_chr12_-_111180730 NM_001244974 NM_002710	5039	-	AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##X74008|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##BC014073|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_001244974|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_002710|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	0.839771	0.0	denovo_WM_7:16:0.656
chr5	133946512	133946668	reg1003258.p2	8.276	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-84785	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-85227	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-104300	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	21907	-	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	37841	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	127720	+	D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand	0.997019	0.0	denovo_WM_7:-7:0.424	denovo_WM_7:-8:0.424
chr6	43395298	43395453	reg1003009.p1	8.276	+	TSC_hg19_v1_chr6_+_43395310 AK000002 NM_001198934	-62	+	TSC_hg19_v1_chr6_-_43337215 BC098434 AF090114 NM_014345 BC030687	-58133	-	AB463553 AY555741 AY555742 AY555743 AY555744 NM_206922	-118846	-	AY032599 NM_033450	4113	+	AY358126 NM_023932 BC110320	27897	-	BC000230 BC006425 NM_206539	28410	-	AK000002|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_001198934|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##BC098434|ZNF318|24149|zinc finger protein 318##AF090114|ZNF318|24149|zinc finger protein 318##NM_014345|ZNF318|24149|zinc finger protein 318##BC030687|ZNF318|24149|zinc finger protein 318##AY555741|CRIP3|401262|cysteine-rich protein 3##AY555742|CRIP3|401262|cysteine-rich protein 3##AY555743|CRIP3|401262|cysteine-rich protein 3##AY555744|CRIP3|401262|cysteine-rich protein 3##NM_206922|CRIP3|401262|cysteine-rich protein 3##AY032599|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_033450|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##AY358126|DLK2|65989|delta-like 2 homolog (Drosophila)##NM_023932|DLK2|65989|delta-like 2 homolog (Drosophila)##BC110320|DLK2|65989|delta-like 2 homolog (Drosophila)##BC000230|DLK2|65989|delta-like 2 homolog (Drosophila)##BC006425|DLK2|65989|delta-like 2 homolog (Drosophila)##NM_206539|DLK2|65989|delta-like 2 homolog (Drosophila)	0.981035	0.0	denovo_WM_7:2:0.554	denovo_WM_7:3:0.322
chr10	22667301	22667406	reg1003225.p1	8.275	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-32897	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-57188	+	TSC_hg19_v1_chr10_+_22605316 NM_001204062 NM_012071 BX647275 AF201948 BC022898 AF078848 AK128789 AK313235 AK295109 AY542159	-62028	+	TSC_hg19_v1_chr10_+_22726003 AK295718	58646	+	AK294817 TSC_hg19_v1_chr10_-_23003038	335684	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	336137	-	NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##NM_001204062|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##NM_012071|COMMD3|23412|COMM domain containing 3##BX647275|COMMD3|23412|COMM domain containing 3##AF201948|COMMD3|23412|COMM domain containing 3##BC022898|COMMD3|23412|COMM domain containing 3##AF078848|COMMD3|23412|COMM domain containing 3##AK128789|COMMD3|23412|COMM domain containing 3##AK313235|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##AY542159|COMMD3|23412|COMM domain containing 3##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	0.996944	0.0	denovo_WM_7:0:0.239	denovo_WM_7:1:0.239	denovo_WM_7:2:0.239	denovo_WM_7:3:0.239
chr3	136580297	136580426	reg1003309.p1	8.275	+	BC050423 NM_001097599 NM_001097600 NM_025246 TSC_hg19_v1_chr3_+_136537897 BC022557 AK314079 BC000111 AL136661	-42442	+	TSC_hg19_v1_chr3_-_136471221 BC040708 AB210023 AK309934 BC064699 CR749247 NM_005862	-109146	-	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	-611159	+	TSC_hg19_v1_chr3_+_136581071 NM_006153 BC006403	679	+	TSC_hg19_v1_chr3_+_136581074 X17576 AK312692	731	+	NM_001190796 TSC_hg19_v1_chr3_+_136649346 AK301460	68976	+	BC050423|TMEM22|80723|transmembrane protein 22##NM_001097599|TMEM22|80723|transmembrane protein 22##NM_001097600|TMEM22|80723|transmembrane protein 22##NM_025246|TMEM22|80723|transmembrane protein 22##BC022557|TMEM22|80723|transmembrane protein 22##AK314079|TMEM22|80723|transmembrane protein 22##BC000111|TMEM22|80723|transmembrane protein 22##AL136661|TMEM22|80723|transmembrane protein 22##BC040708|STAG1|10274|stromal antigen 1##AB210023|STAG1|10274|stromal antigen 1##AK309934|STAG1|10274|stromal antigen 1##BC064699|STAG1|10274|stromal antigen 1##CR749247|STAG1|10274|stromal antigen 1##NM_005862|STAG1|10274|stromal antigen 1##S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_006153|NCK1|4690|NCK adaptor protein 1##BC006403|NCK1|4690|NCK adaptor protein 1##X17576|NCK1|4690|NCK adaptor protein 1##AK312692|NCK1|4690|NCK adaptor protein 1##NM_001190796|NCK1|4690|NCK adaptor protein 1##AK301460|NCK1|4690|NCK adaptor protein 1	0.998542	0.0	denovo_WM_7:-22:0.449	denovo_WM_7:-23:0.449
chr8	110191414	110191549	reg1003303.p1	8.275	+	BC105045 BC113360 NM_003301 X72089 D16845 AY493373 HQ258206 X75071	-91785	+	AK055230 NM_153015 BC033057 BC030710	-391675	-	TSC_hg19_v1_chr8_+_109455874 AK290974 D14659 AB384437 CR457402 CU676696 CU692380 HQ447150	-735601	+	AF283302 AK311583 AF521133 NM_001128211 AK307663	150653	-	AK301278 TSC_hg19_v1_chr8_-_110346317 BC000967 AK027897 BC043406 AK315006 BC031258 NM_032869 AF283301	154890	-	TSC_hg19_v1_chr8_+_110346575 NM_001193557 NM_020189 AK095651 AK316560 AK000487 AK290752 BC051878 BC007870	155112	+	BC105045|TRHR|7201|thyrotropin-releasing hormone receptor##BC113360|TRHR|7201|thyrotropin-releasing hormone receptor##NM_003301|TRHR|7201|thyrotropin-releasing hormone receptor##X72089|TRHR|7201|thyrotropin-releasing hormone receptor##D16845|TRHR|7201|thyrotropin-releasing hormone receptor##AY493373|TRHR|7201|thyrotropin-releasing hormone receptor##HQ258206|TRHR|7201|thyrotropin-releasing hormone receptor##X75071|TRHR|7201|thyrotropin-releasing hormone receptor##AK055230|TMEM74|157753|transmembrane protein 74##NM_153015|TMEM74|157753|transmembrane protein 74##BC030710|TMEM74|157753|transmembrane protein 74##AK290974|TTC35|9694|tetratricopeptide repeat domain 35##D14659|TTC35|9694|tetratricopeptide repeat domain 35##CR457402|TTC35|9694|tetratricopeptide repeat domain 35##HQ447150|TTC35|9694|tetratricopeptide repeat domain 35##AF283302|NUDCD1|84955|NudC domain containing 1##AK311583|NUDCD1|84955|NudC domain containing 1##AF521133|NUDCD1|84955|NudC domain containing 1##NM_001128211|NUDCD1|84955|NudC domain containing 1##AK307663|NUDCD1|84955|NudC domain containing 1##AK301278|NUDCD1|84955|NudC domain containing 1##BC000967|NUDCD1|84955|NudC domain containing 1##AK027897|NUDCD1|84955|NudC domain containing 1##BC043406|NUDCD1|84955|NudC domain containing 1##AK315006|NUDCD1|84955|NudC domain containing 1##BC031258|NUDCD1|84955|NudC domain containing 1##NM_032869|NUDCD1|84955|NudC domain containing 1##AF283301|NUDCD1|84955|NudC domain containing 1##NM_001193557|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##NM_020189|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK095651|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK316560|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK000487|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK290752|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##BC051878|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##BC007870|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)	1.540738	0.0	denovo_WM_7:14:0.513	denovo_WM_7:-22:0.614
chr9	130680108	130680244	reg1003022.p2	8.275	+	BC036705 TSC_hg19_v1_chr9_-_130679297 AK292049 AK000600 NM_175039 NM_175040	-916	-	TSC_hg19_v1_chr9_-_130667604 AY358672 AK124217 AK310850	-12561	-	TSC_hg19_v1_chr9_-_130661892 BC036102	-18266	-	TSC_hg19_v1_chr9_-_130689700 BC042184 NM_173492	9557	-	NM_001135219	12899	-	TSC_hg19_v1_chr9_-_130700118 BC015374	19931	-	BC036705|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK292049|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK000600|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175039|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175040|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AY358672|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK124217|LOC100131355|100131355|uncharacterized LOC100131355##AK310850|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036102|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC042184|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_173492|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_001135219|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##BC015374|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit	0.989934	0.0	denovo_WM_7:37:0.343	denovo_WM_7:39:0.342
chr17	57902327	57902436	reg1002941.p1	8.274	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-117308	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-117346	+	BC009758 TSC_hg19_v1_chr17_+_57785014 AK024969	-117365	+	TSC_hg19_v1_chr17_+_57915291 AK310806	12925	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	67810	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	68081	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##BC009758|VMP1|81671|vacuole membrane protein 1##AK024969|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	1.18575	0.0	
chr3	141089095	141089252	reg1003453.p1	8.274	+	TSC_hg19_v1_chr3_+_141087345 AK311501	-1816	+	BC015444 NM_001080412 TSC_hg19_v1_chr3_+_141043057	-46117	+	TSC_hg19_v1_chr3_+_140950671 AK297790 NM_001037172 NM_152282 AK074331 BC035834 BX647621 AY358460	-138487	+	AK311479 TSC_hg19_v1_chr3_+_141105293	16115	+	TSC_hg19_v1_chr3_+_141205882 AK292016 AK301015 AF115573 D78155 D82880 NM_006506	116698	+	TSC_hg19_v1_chr3_+_141457045 NM_001201370 NM_014245 NM_183237	367896	+	AK311501|ZBTB38|253461|zinc finger and BTB domain containing 38##BC015444|ZBTB38|253461|zinc finger and BTB domain containing 38##NM_001080412|ZBTB38|253461|zinc finger and BTB domain containing 38##AK297790|ACPL2|92370|acid phosphatase-like 2##NM_001037172|ACPL2|92370|acid phosphatase-like 2##NM_152282|ACPL2|92370|acid phosphatase-like 2##AK074331|ACPL2|92370|acid phosphatase-like 2##BC035834|ACPL2|92370|acid phosphatase-like 2##BX647621|ACPL2|92370|acid phosphatase-like 2##AY358460|ACPL2|92370|acid phosphatase-like 2##AK292016|RASA2|5922|RAS p21 protein activator 2##AK301015|RASA2|5922|RAS p21 protein activator 2##AF115573|RASA2|5922|RAS p21 protein activator 2##D78155|RASA2|5922|RAS p21 protein activator 2##D82880|RASA2|5922|RAS p21 protein activator 2##NM_006506|RASA2|5922|RAS p21 protein activator 2##NM_001201370|RNF7|9616|ring finger protein 7##NM_014245|RNF7|9616|ring finger protein 7##NM_183237|RNF7|9616|ring finger protein 7	0.0	0.0	
chr4	70183776	70183872	reg1002789.p1	8.274	+	AF177272 AF177273 AF177274 NM_001207004 NM_053039 AB451456	-37607	+	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	-103367	-	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	-221610	+	AY529122 DQ895203 AF064200 AF081793 AJ005162 Y00317 BC026264 TSC_hg19_v1_chr4_-_70361624 AK292748 NM_021139	177778	-	FJ664272 FJ664273 NM_001105677	321535	-	AK314209 AK304249 NM_001252274 NM_001252275 NM_006798	335141	-	AF177272|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177273|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177274|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_001207004|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_053039|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AB451456|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AY529122|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##DQ895203|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AF064200|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AF081793|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AJ005162|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##Y00317|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##BC026264|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AK292748|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##NM_021139|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##FJ664272|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##FJ664273|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##NM_001105677|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##AK314209|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##AK304249|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_001252274|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_001252275|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_006798|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus	0.999137	0.20708	CTCF.p2:0:0.207	denovo_WM_7:45:0.739
chr8	30823972	30824140	reg1003865.p1	8.272	+	AF285605 NM_031271 BC140934	-117487	-	TSC_hg19_v1_chr8_-_30670335 NM_001009552	-153705	-	TSC_hg19_v1_chr8_-_30670318 AK091875	-153744	-	BC106708 NM_013357	66260	-	NM_000553	66721	+	AF195513 AY077841 NM_001015508	67174	-	AF285605|TEX15|56154|testis expressed 15##NM_031271|TEX15|56154|testis expressed 15##BC140934|TEX15|56154|testis expressed 15##NM_001009552|PPP2CB|5516|protein phosphatase 2, catalytic subunit, beta isozyme##AK091875|PPP2CB|5516|protein phosphatase 2, catalytic subunit, beta isozyme##BC106708|PURG|29942|purine-rich element binding protein G##NM_013357|PURG|29942|purine-rich element binding protein G##NM_000553|WRN|7486|Werner syndrome, RecQ helicase-like##AF195513|PURG|29942|purine-rich element binding protein G##AY077841|PURG|29942|purine-rich element binding protein G##NM_001015508|PURG|29942|purine-rich element binding protein G	0.0	0.0	
chr6	34662779	34662959	reg1003402.p2	8.271	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-138773	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-180215	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-228965	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	1677	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	1757	-	NM_003093	62001	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.996443	0.0	
chr7	6764863	6765020	reg1003862.p1	8.271	+	AK092111 TSC_hg19_v1_chr7_+_6746715	-18232	+	TSC_hg19_v1_chr7_-_6746579 BC051892 BC154414 AB021643 NM_006956 NM_016265 AK293925	-18361	-	NM_017560	-109415	+	TSC_hg19_v1_chr7_+_6769414 AK296451	4474	+	AK314983 BC034495 NM_001099697 NM_173565	28798	+	AK296026 CU679629 AK000993 TSC_hg19_v1_chr7_-_6865849	100897	-	BC051892|ZNF12|7559|zinc finger protein 12##BC154414|ZNF12|7559|zinc finger protein 12##AB021643|ZNF12|7559|zinc finger protein 12##NM_006956|ZNF12|7559|zinc finger protein 12##NM_016265|ZNF12|7559|zinc finger protein 12##AK293925|ZNF12|7559|zinc finger protein 12##NM_017560|ZNF853|54753|zinc finger protein 853##AK314983|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##BC034495|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##NM_001099697|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##NM_173565|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##AK296026|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##AK000993|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	1.33903	0.0	denovo_WM_7:20:0.293	denovo_WM_7:29:0.498	denovo_WM_7:36:0.222	denovo_WM_7:37:0.222
chr3	16412819	16412985	reg1003873.p1	8.269	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-106194	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-106513	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-196708	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	142116	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	142322	-	BX648638 AK303026 NM_001190811	233368	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	0.0	0.0	
chr1	8823954	8824100	reg1003939.p1	8.268	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-340010	-	NM_001080397	-439638	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-737629	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	53565	-	GU170215 NM_001201483	107607	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	114680	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.999759	0.0	denovo_WM_7:-19:0.298	denovo_WM_7:-20:0.298	denovo_WM_7:-21:0.298
chr9	3299976	3300106	reg1002794.p1	8.268	+	AK127804 TSC_hg19_v1_chr9_-_3223066	-77005	-	TSC_hg19_v1_chr9_-_2844102 AK315531 NM_014878	-455928	-	TSC_hg19_v1_chr9_-_2844084 AL832245 AK225953 AL832239	-455952	-	TSC_hg19_v1_chr9_-_3525889 AK310956 AK289540	225798	-	TSC_hg19_v1_chr9_-_3525983 BC022191 NM_002919 NM_134428	225963	-	TSC_hg19_v1_chr9_+_3526079 AK125504	226047	+	AK315531|KIAA0020|9933|KIAA0020##NM_014878|KIAA0020|9933|KIAA0020##AL832245|KIAA0020|9933|KIAA0020##AK225953|KIAA0020|9933|KIAA0020##AL832239|KIAA0020|9933|KIAA0020##AK310956|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##AK289540|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##BC022191|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_002919|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_134428|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)	0.985407	0.0	denovo_WM_7:-25:0.266	denovo_WM_7:-26:0.682
chr2	213012794	213012934	reg1002839.p1	8.267	+	AK316425 NM_001122634 AK302778 AY317138	-1554779	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	-1591475	+	NM_001122633 AB208800	-1670446	+	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	390451	-	AK301503 AF130863 NM_016260	1002191	-	BC028936 NM_001079526	1003468	-	AK316425|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122634|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK302778|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AY317138|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122633|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB208800|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)	0.990906	0.983875	denovo_WM_7:9:0.807	CTCF.p2:-24:0.984
chr9	74164098	74164242	reg1003817.p2	8.267	+	AL136545 TSC_hg19_v1_chr9_-_74061901	-102287	-	AJ505025 AJ505026 NM_001007471 TSC_hg19_v1_chr9_-_73736559	-427634	-	BC067733 AF325212 AK021788 AK225732 BC094699 NM_001007470 NM_020952 NM_024971 NM_206944 NM_206945 NM_206946 NM_206947 NM_206948 BC142972	-680210	-	BC140773 BC144510 BC171782 AB037833 BC146780 TSC_hg19_v1_chr9_-_74383430 AF137030 AK300405 AK056807 NM_001135820 NM_013390	219408	-	AF151825 TSC_hg19_v1_chr9_-_74525994	361755	-	TSC_hg19_v1_chr9_-_74526110 BC044576 NM_001025780 NM_016014 AK293060	361986	-	AL136545|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505025|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505026|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007471|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC067733|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AF325212|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK021788|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK225732|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC094699|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007470|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_020952|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_024971|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206944|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206945|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206946|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206947|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206948|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC142972|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC140773|TMEM2|23670|transmembrane protein 2##BC144510|TMEM2|23670|transmembrane protein 2##BC171782|TMEM2|23670|transmembrane protein 2##AB037833|TMEM2|23670|transmembrane protein 2##BC146780|TMEM2|23670|transmembrane protein 2##AF137030|TMEM2|23670|transmembrane protein 2##AK300405|TMEM2|23670|transmembrane protein 2##NM_001135820|TMEM2|23670|transmembrane protein 2##NM_013390|TMEM2|23670|transmembrane protein 2##AF151825|FAM108B1|51104|family with sequence similarity 108, member B1##BC044576|FAM108B1|51104|family with sequence similarity 108, member B1##NM_001025780|FAM108B1|51104|family with sequence similarity 108, member B1##NM_016014|FAM108B1|51104|family with sequence similarity 108, member B1##AK293060|FAM108B1|51104|family with sequence similarity 108, member B1	0.020074	0.0	
chrX	70842545	70842701	reg1004178.p1	8.267	+	AY242128 CU689880 DQ892460 DQ895673 BC034403 AF469635 AK313679 NM_001142797 NM_001504 X95876	-4291	-	NM_052957	-44750	+	TSC_hg19_v1_chrX_+_70765496 AL050366	-77101	+	NM_001145139 NM_001145140	95511	-	NM_001145139 NM_001145140	140516	+	TSC_hg19_v1_chrX_+_71130694 NM_001013627	288155	+	AY242128|CXCR3|2833|chemokine (C-X-C motif) receptor 3##DQ892460|CXCR3|2833|chemokine (C-X-C motif) receptor 3##DQ895673|CXCR3|2833|chemokine (C-X-C motif) receptor 3##BC034403|CXCR3|2833|chemokine (C-X-C motif) receptor 3##AF469635|CXCR3|2833|chemokine (C-X-C motif) receptor 3##AK313679|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_001142797|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_001504|CXCR3|2833|chemokine (C-X-C motif) receptor 3##X95876|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_052957|ACRC|93953|acidic repeat containing##AL050366|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001013627|NHSL2|340527|NHS-like 2	0.987932	0.0	denovo_WM_7:0:0.949
chr14	103057019	103057166	reg1004551.p1	8.264	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-80978	-	AK291868 TSC_hg19_v1_chr14_-_102976070	-81059	-	TSC_hg19_v1_chr14_+_102829428 BC030791 AK296395 AK299690 BC142667 BC142715 AK127721	-227667	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	1906	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	2069	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	186727	+	BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##AK291868|ANKRD9|122416|ankyrin repeat domain 9##BC030791|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK296395|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK299690|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142667|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142715|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK127721|TECPR2|9895|tectonin beta-propeller repeat containing 2##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##AF155595|RCOR1|23186|REST corepressor 1##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3	0.987422	0.0	denovo_WM_7:-42:0.625	denovo_WM_7:-43:0.242
chr18	25440642	25440775	reg1003704.p2	8.263	+	AF239821 BC025764 TSC_hg19_v1_chr18_-_24765254 AY358488 NM_031422	-675475	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	-717829	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	-994992	-	TSC_hg19_v1_chr18_-_25757095 AB384981 EU832318 EU832403 X54315 BC036470	316329	-	TSC_hg19_v1_chr18_-_25757363 NM_001792	316689	-	TSC_hg19_v1_chr18_-_28622624 X83929 D17427 AK291748 NM_001941 NM_024423	3181994	-	AF239821|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##BC025764|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AY358488|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_031422|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##EU832318|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832403|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X54315|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##BC036470|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##NM_001792|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X83929|DSC3|1825|desmocollin 3##D17427|DSC3|1825|desmocollin 3##AK291748|DSC3|1825|desmocollin 3##NM_001941|DSC3|1825|desmocollin 3##NM_024423|DSC3|1825|desmocollin 3	1.032299	0.0	
chr9	87437903	87438062	reg1003809.p1	8.263	+	U12140 TSC_hg19_v1_chr9_+_87285349	-152650	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-153230	+	TSC_hg19_v1_chr9_+_87284681 AF410899 AF410900 AF410901	-153286	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	918889	-	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	1118092	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	1118196	+	U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410899|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410900|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410901|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	0.902119	0.0	denovo_WM_7:27:0.457	denovo_WM_7:28:0.398
chrX	56801781	56801918	reg1003185.p2	8.263	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-46158	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-211798	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-542939	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	220122	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	346079	-	BC071694 NM_019003	362208	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	1.774947	0.0	denovo_WM_7:-12:0.847	denovo_WM_7:-27:0.844
chr3	169898291	169898471	reg1002482.p2	8.261	+	TSC_hg19_v1_chr3_+_169755984 AK311293	-142429	+	TSC_hg19_v1_chr3_+_169755782 BC000181	-142591	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	-142627	+	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	1064	-	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	1147	-	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	41836	+	AK311293|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota	0.98435	0.0	denovo_WM_7:-19:0.475	denovo_WM_7:-20:0.475
chr14	50697650	50697830	reg1003512.p2	8.259	+	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	-114470	-	AF390030 NM_001014830	-138380	-	AK091232 AX746864 NM_001012706	-223503	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	243	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	360	-	TSC_hg19_v1_chr14_-_50778948 CU675259 AY757363 BC006117 AK309294 AK022680 AK292627 NM_024884	81140	-	AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)##AY757363|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC006117|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK309294|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK022680|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK292627|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##NM_024884|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase	0.503028	0.0	denovo_WM_7:-5:0.280
chr4	39362333	39362462	reg1003200.p1	8.259	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	-178302	+	AK289785 NM_015990 NM_199039	-298546	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-315959	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	5555	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	46087	+	TSC_hg19_v1_chr4_+_39408557 BC104871 BC113653 BC143575	46152	+	AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta##BC104871|KLB|152831|klotho beta##BC113653|KLB|152831|klotho beta##BC143575|KLB|152831|klotho beta	0.033673	0.0	
chr13	24698968	24699109	reg1003749.p1	8.258	+	TSC_hg19_v1_chr13_+_24553943 BX648244 BC043582	-145105	+	BX648445 TSC_hg19_v1_chr13_+_24553892	-145173	+	NM_001007537 CU691876 BC137004 BC137006 BC144450	-227880	-	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	35857	+	AK299981 AK301149 TSC_hg19_v1_chr13_+_24825840	126797	+	TSC_hg19_v1_chr13_+_24844889 AK297394 AK298717 AK123031	145860	+	BX648244|SPATA13|221178|spermatogenesis associated 13##NM_001007537|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137004|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137006|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC144450|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13##AK299981|SPATA13|221178|spermatogenesis associated 13##AK301149|SPATA13|221178|spermatogenesis associated 13##AK297394|SPATA13|221178|spermatogenesis associated 13##AK298717|SPATA13|221178|spermatogenesis associated 13##AK123031|SPATA13|221178|spermatogenesis associated 13	0.64735	0.0	denovo_WM_7:-15:0.538
chr17	62044425	62044543	reg1003729.p2	8.258	+	S52229 S79249 X83539 M80461 BC032651 BC002975 BC030210 AX775815 AX775817 AK222954 AK313583 AK223210 NM_000626 NM_001039933 NM_021602 M89957	-34818	-	M14398 AF110644 AF185611 BC075012 BC075013 V00519 BC062475 BC090045 AK300190 AY613431 AY613432 NM_000515 NM_022559 NM_022560 NM_022561 NM_022562	-48318	-	BC119747 BC029365 NM_001318 NM_022579 NM_022580 NM_022581 AX772828	-55827	-	AY212253 M81758 NM_000334	5754	-	AK021786 AK294360 AK302960 AK304254 NM_001164257 NM_001191029 NM_001191030 NM_001191031 BC030709 BC045676	31278	+	NM_000873 TSC_hg19_v1_chr17_-_62084314	39821	-	S52229|CD79B|974|CD79b molecule, immunoglobulin-associated beta##S79249|CD79B|974|CD79b molecule, immunoglobulin-associated beta##X83539|CD79B|974|CD79b molecule, immunoglobulin-associated beta##M80461|CD79B|974|CD79b molecule, immunoglobulin-associated beta##BC032651|CD79B|974|CD79b molecule, immunoglobulin-associated beta##BC002975|CD79B|974|CD79b molecule, immunoglobulin-associated beta##BC030210|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AX775815|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AX775817|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AK222954|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AK313583|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AK223210|CD79B|974|CD79b molecule, immunoglobulin-associated beta##NM_000626|CD79B|974|CD79b molecule, immunoglobulin-associated beta##NM_001039933|CD79B|974|CD79b molecule, immunoglobulin-associated beta##NM_021602|CD79B|974|CD79b molecule, immunoglobulin-associated beta##M89957|CD79B|974|CD79b molecule, immunoglobulin-associated beta##M14398|GH1|2688|growth hormone 1##AF110644|GH1|2688|growth hormone 1##AF185611|GH1|2688|growth hormone 1##BC075012|GH1|2688|growth hormone 1##BC075013|GH1|2688|growth hormone 1##V00519|GH1|2688|growth hormone 1##BC062475|GH1|2688|growth hormone 1##BC090045|GH1|2688|growth hormone 1##AY613431|GH1|2688|growth hormone 1##AY613432|GH1|2688|growth hormone 1##NM_000515|GH1|2688|growth hormone 1##NM_022559|GH1|2688|growth hormone 1##NM_022560|GH1|2688|growth hormone 1##NM_022561|GH1|2688|growth hormone 1##NM_022562|GH1|2688|growth hormone 1##BC119747|CSHL1|1444|chorionic somatomammotropin hormone-like 1##BC029365|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_001318|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_022579|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_022580|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_022581|CSHL1|1444|chorionic somatomammotropin hormone-like 1##AY212253|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##M81758|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##NM_000334|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##AK021786|C17orf72|92340|chromosome 17 open reading frame 72##AK294360|C17orf72|92340|chromosome 17 open reading frame 72##AK302960|C17orf72|92340|chromosome 17 open reading frame 72##AK304254|C17orf72|92340|chromosome 17 open reading frame 72##NM_001164257|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191029|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191030|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191031|C17orf72|92340|chromosome 17 open reading frame 72##BC030709|C17orf72|92340|chromosome 17 open reading frame 72##BC045676|C17orf72|92340|chromosome 17 open reading frame 72##NM_000873|ICAM2|3384|intercellular adhesion molecule 2	0.987304	0.0	denovo_WM_7:40:0.987
chr11	66794966	66795083	reg1003480.p1	8.257	+	NM_177963 AK289672 AK289727 BC037406	-4172	+	AK315810 NM_001177880	-4835	+	AK026328 NM_001136485	-52274	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	29262	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	29316	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	91715	+	NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##AK315810|SYT12|91683|synaptotagmin XII##NM_001177880|SYT12|91683|synaptotagmin XII##AK026328|C11orf86|254439|chromosome 11 open reading frame 86##NM_001136485|C11orf86|254439|chromosome 11 open reading frame 86##NM_014578|RHOD|29984|ras homolog gene family, member D##BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A	1.838977	0.0	denovo_WM_7:-29:0.551	denovo_WM_7:-30:0.296	denovo_WM_7:-44:0.287	denovo_WM_7:-45:0.582
chr20	43600223	43600386	reg1002363.p2	8.257	+	AK315238 U60207 TSC_hg19_v1_chr20_+_43595176 BC058916 BC039023 U18297	-5113	+	NM_006282 TSC_hg19_v1_chr20_+_43595152 AB209315 BC029511 AK309169 AK225326 BC005231 BC015332 BC038850 CR933633 BC093768	-5158	+	AB590243 BT020008 BT020009 CR456765 CU677113 DQ891151 EU176561 TSC_hg19_v1_chr20_-_43589038 AK129538 U58970 BC014907 AK222952 BC001763 BC007423 AK000594 BC006573 AB085681 AK302128 AK307655 NM_006809	-11250	-	BC132957 BC132959 BC144234 TSC_hg19_v1_chr20_-_43729732 AK289735 NM_002251	129385	-	CU691668 AY038181 BC039173 AY358822 NM_145652	143463	-	AB464352 AY358678 AY037803 NM_080869	152792	-	AK315238|STK4|6789|serine/threonine kinase 4##U60207|STK4|6789|serine/threonine kinase 4##BC058916|STK4|6789|serine/threonine kinase 4##BC039023|STK4|6789|serine/threonine kinase 4##U18297|STK4|6789|serine/threonine kinase 4##NM_006282|STK4|6789|serine/threonine kinase 4##AB209315|STK4|6789|serine/threonine kinase 4##BC029511|STK4|6789|serine/threonine kinase 4##AK309169|STK4|6789|serine/threonine kinase 4##AK225326|STK4|6789|serine/threonine kinase 4##BC005231|STK4|6789|serine/threonine kinase 4##BC015332|STK4|6789|serine/threonine kinase 4##BC038850|STK4|6789|serine/threonine kinase 4##CR933633|STK4|6789|serine/threonine kinase 4##BC093768|STK4|6789|serine/threonine kinase 4##BT020008|TOMM34|10953|translocase of outer mitochondrial membrane 34##BT020009|TOMM34|10953|translocase of outer mitochondrial membrane 34##CR456765|TOMM34|10953|translocase of outer mitochondrial membrane 34##DQ891151|TOMM34|10953|translocase of outer mitochondrial membrane 34##EU176561|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK129538|TOMM34|10953|translocase of outer mitochondrial membrane 34##U58970|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC014907|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK222952|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC001763|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC007423|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK000594|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC006573|TOMM34|10953|translocase of outer mitochondrial membrane 34##AB085681|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK302128|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK307655|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006809|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC132957|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC132959|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC144234|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AK289735|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##NM_002251|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AY038181|WFDC5|149708|WAP four-disulfide core domain 5##BC039173|WFDC5|149708|WAP four-disulfide core domain 5##AY358822|WFDC5|149708|WAP four-disulfide core domain 5##NM_145652|WFDC5|149708|WAP four-disulfide core domain 5##AY358678|WFDC12|128488|WAP four-disulfide core domain 12##AY037803|WFDC12|128488|WAP four-disulfide core domain 12##NM_080869|WFDC12|128488|WAP four-disulfide core domain 12	0.999671	0.0	
chr15	75315634	75315799	reg1002793.p1	8.256	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-27809	+	AK000381 NM_017793	-65942	-	CU675593 AY034074 BC002497 BC007270 TSC_hg19_v1_chr15_-_75249114	-66692	-	NM_021823 TSC_hg19_v1_chr15_+_75315930	212	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	265	+	AK128205 TSC_hg19_v1_chr15_+_75491259	175530	+	AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK000381|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_017793|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AY034074|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC002497|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC007270|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK128205|C15orf39|56905|chromosome 15 open reading frame 39	0.998977	0.0	
chr9	119606806	119606908	reg1008049.p1	8.254	+	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	-157251	+	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	-157395	-	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	-690787	+	TSC_hg19_v1_chr9_-_120177318 AB014534 BC146756 NM_014010	570456	-	TSC_hg19_v1_chr9_-_120177336 BX649176	570477	-	TSC_hg19_v1_chr9_+_120466459 NM_138554 AK290053	859607	+	NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##AB014534|ASTN2|23245|astrotactin 2##BC146756|ASTN2|23245|astrotactin 2##NM_014010|ASTN2|23245|astrotactin 2##BX649176|ASTN2|23245|astrotactin 2##NM_138554|TLR4|7099|toll-like receptor 4##AK290053|TLR4|7099|toll-like receptor 4	0.993103	0.0	denovo_WM_7:29:0.245	denovo_WM_7:30:0.379	denovo_WM_7:33:0.240
chr2	179372438	179372579	reg1000772.p2	8.253	+	TSC_hg19_v1_chr2_+_179345280 AF286162 BC044567 EU832321 EU832406	-27078	+	TSC_hg19_v1_chr2_+_179345234 AK074209	-27276	+	AK314459 NM_019091 TSC_hg19_v1_chr2_+_179345209	-27305	+	TSC_hg19_v1_chr2_+_179387947 AK093733	15452	+	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	287193	-	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	299595	-	AF286162|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##BC044567|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##EU832321|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##EU832406|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK074209|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK314459|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##NM_019091|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK093733|LOC100506866|100506866|uncharacterized LOC100506866##X98114|TTN|7273|titin##X98115|TTN|7273|titin##X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin	0.998834	0.0	
chr15	66106726	66106834	reg1003230.p2	8.252	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-22187	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-22307	-	AF062922 NM_004727	-192511	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	55067	+	TSC_hg19_v1_chr15_-_66321664 AK054827	214913	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	439297	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	0.998823	0.0	
chr16	14271673	14271795	reg1003688.p1	8.249	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-106648	+	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	-257703	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-1276266	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	8784	+	BC047761 TSC_hg19_v1_chr16_+_14294209	22464	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	452294	-	AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK093577|MKL2|57496|MKL/myocardin-like 2##BC047761|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease	0.938804	0.0	denovo_WM_7:-45:0.797
chr9	79054016	79054196	reg1003680.p2	8.249	+	BC015473 TSC_hg19_v1_chr9_-_79009434 BC007069 AK002011 AK307079 AK315734 NM_018339	-44715	-	TSC_hg19_v1_chr9_+_78505588 NM_001190482 NM_006200 AK056202 AK225773 AK310862 AX805774 BC012064	-548471	+	TSC_hg19_v1_chr9_+_77703429 AK291511 AK222596 U63717 BC007459 AB528711 CU675669	-1350596	+	AY196293 NM_001097634	2475	+	NM_001097633 NM_001490 TSC_hg19_v1_chr9_+_79074142 AY196294 AY196295 AL832647	20010	+	AY196296 NM_001097635	39150	+	BC007069|RFK|55312|riboflavin kinase##AK002011|RFK|55312|riboflavin kinase##AK307079|RFK|55312|riboflavin kinase##AK315734|RFK|55312|riboflavin kinase##NM_018339|RFK|55312|riboflavin kinase##NM_001190482|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##NM_006200|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK056202|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK225773|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK310862|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##BC012064|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK291511|OSTF1|26578|osteoclast stimulating factor 1##AK222596|OSTF1|26578|osteoclast stimulating factor 1##U63717|OSTF1|26578|osteoclast stimulating factor 1##BC007459|OSTF1|26578|osteoclast stimulating factor 1##AY196293|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097634|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097633|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001490|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196294|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196295|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AL832647|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196296|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097635|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2	1.959143	0.0	denovo_WM_7:30:0.795	denovo_WM_7:45:0.293	denovo_WM_7:46:0.294	denovo_WM_7:47:0.295
chr3	89228992	89229107	reg1003403.p2	8.248	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-72199	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-72328	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-1030021	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	4463627	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	4463869	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	4469978	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.072646	0.0	
chr7	121170785	121170965	reg1001268.p2	8.245	+	TSC_hg19_v1_chr7_-_121036363 AK292731 AK290682 BC068526 NM_001040020 NM_014888	-134461	-	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	-134538	-	AF169963 NM_057168	-201786	+	NM_001206838 NM_001206839 NM_002851 TSC_hg19_v1_chr7_+_121513164	342286	+	TSC_hg19_v1_chr7_+_121513214 U88967	342346	+	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	613414	-	AK292731|FAM3C|10447|family with sequence similarity 3, member C##AK290682|FAM3C|10447|family with sequence similarity 3, member C##BC068526|FAM3C|10447|family with sequence similarity 3, member C##NM_001040020|FAM3C|10447|family with sequence similarity 3, member C##NM_014888|FAM3C|10447|family with sequence similarity 3, member C##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C##AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_001206838|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_001206839|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_002851|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase	0.276075	0.0	denovo_WM_7:66:0.206
chr1	167233398	167233528	reg1003239.p2	8.244	+	TSC_hg19_v1_chr1_+_167190127 NM_001198786 NM_002697 AK302525 AK303201 AK308004 AK091438 S66901 BC052274 X13403	-43406	+	NM_001080426	-169377	+	CU687006 BC074830 BC074876 TSC_hg19_v1_chr1_-_167059615 BC107164 BC107165 AK312833 BC069705 BC069723 BC069745 BC069761 BC069789 NM_005814 U79725	-173768	-	NM_001198783 TSC_hg19_v1_chr1_+_167298306	64835	+	TSC_hg19_v1_chr1_+_167298389 AY113189 BC001664 BC003571	64976	+	AB590419 CU693020 DQ893778 EU176191 X55510 X55511 X55512 BC025703 AK128376 AK313946 J04132 AK223325 NM_000734 NM_198053	254310	-	NM_001198786|POU2F1|5451|POU class 2 homeobox 1##NM_002697|POU2F1|5451|POU class 2 homeobox 1##AK302525|POU2F1|5451|POU class 2 homeobox 1##AK303201|POU2F1|5451|POU class 2 homeobox 1##AK308004|POU2F1|5451|POU class 2 homeobox 1##AK091438|POU2F1|5451|POU class 2 homeobox 1##BC052274|POU2F1|5451|POU class 2 homeobox 1##X13403|POU2F1|5451|POU class 2 homeobox 1##NM_001080426|DUSP27|92235|dual specificity phosphatase 27 (putative)##BC074830|GPA33|10223|glycoprotein A33 (transmembrane)##BC074876|GPA33|10223|glycoprotein A33 (transmembrane)##BC107164|GPA33|10223|glycoprotein A33 (transmembrane)##BC107165|GPA33|10223|glycoprotein A33 (transmembrane)##AK312833|GPA33|10223|glycoprotein A33 (transmembrane)##BC069705|GPA33|10223|glycoprotein A33 (transmembrane)##BC069723|GPA33|10223|glycoprotein A33 (transmembrane)##BC069745|GPA33|10223|glycoprotein A33 (transmembrane)##BC069761|GPA33|10223|glycoprotein A33 (transmembrane)##BC069789|GPA33|10223|glycoprotein A33 (transmembrane)##NM_005814|GPA33|10223|glycoprotein A33 (transmembrane)##U79725|GPA33|10223|glycoprotein A33 (transmembrane)##NM_001198783|POU2F1|5451|POU class 2 homeobox 1##AY113189|POU2F1|5451|POU class 2 homeobox 1##BC001664|POU2F1|5451|POU class 2 homeobox 1##BC003571|POU2F1|5451|POU class 2 homeobox 1##DQ893778|CD247|919|CD247 molecule##EU176191|CD247|919|CD247 molecule##X55510|CD247|919|CD247 molecule##X55511|CD247|919|CD247 molecule##X55512|CD247|919|CD247 molecule##BC025703|CD247|919|CD247 molecule##AK128376|CD247|919|CD247 molecule##AK313946|CD247|919|CD247 molecule##J04132|CD247|919|CD247 molecule##AK223325|CD247|919|CD247 molecule##NM_000734|CD247|919|CD247 molecule##NM_198053|CD247|919|CD247 molecule	0.989596	0.0	denovo_WM_7:-4:0.746
chr1	221882309	221882460	reg1003190.p1	8.241	+	TSC_hg19_v1_chr1_+_221053066 AB463713 DQ893305 DQ896761	-829285	+	TSC_hg19_v1_chr1_+_221052845 AK127923 AK313298 BC033808	-829470	+	TSC_hg19_v1_chr1_+_221052739 AK056326 NM_021958 BC007294 AB208812 M60721	-829623	+	NM_144728	28417	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	33024	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	33046	-	DQ893305|HLX|3142|H2.0-like homeobox##DQ896761|HLX|3142|H2.0-like homeobox##AK127923|HLX|3142|H2.0-like homeobox##AK313298|HLX|3142|H2.0-like homeobox##BC033808|HLX|3142|H2.0-like homeobox##AK056326|HLX|3142|H2.0-like homeobox##NM_021958|HLX|3142|H2.0-like homeobox##BC007294|HLX|3142|H2.0-like homeobox##AB208812|HLX|3142|H2.0-like homeobox##M60721|HLX|3142|H2.0-like homeobox##NM_144728|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10	0.995863	0.0	denovo_WM_7:-29:0.315	denovo_WM_7:-30:0.315	denovo_WM_7:-31:0.315
chr19	2562101	2562234	reg1001993.p2	8.240	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-85929	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-105207	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-105231	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	140528	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	140575	-	AK124445 TSC_hg19_v1_chr19_-_2717420	155182	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.33683	0.0	
chr4	69041422	69041565	reg1003757.p2	8.240	+	AK122625 NM_207407	-45907	-	AY498712 BC111796 AK292950 AF071882 AK131518 NM_001114387 NM_182606	-212306	-	AK296853 BC125195 BC125196 AB002134 NM_004262 AK290289	-291786	-	AK123556 NM_001129907	42304	-	BC126195 AK310210 AL833167 BX537945 AK290904 NM_182502	69879	-	TSC_hg19_v1_chr4_-_69215804 BC041119 AK056430 NM_001031732 NM_133370	174269	-	AK122625|TMPRSS11F|389208|transmembrane protease, serine 11F##NM_207407|TMPRSS11F|389208|transmembrane protease, serine 11F##AY498712|TMPRSS11A|339967|transmembrane protease, serine 11A##BC111796|TMPRSS11A|339967|transmembrane protease, serine 11A##AK292950|TMPRSS11A|339967|transmembrane protease, serine 11A##AF071882|TMPRSS11A|339967|transmembrane protease, serine 11A##AK131518|TMPRSS11A|339967|transmembrane protease, serine 11A##NM_001114387|TMPRSS11A|339967|transmembrane protease, serine 11A##NM_182606|TMPRSS11A|339967|transmembrane protease, serine 11A##AK296853|TMPRSS11D|9407|transmembrane protease, serine 11D##BC125195|TMPRSS11D|9407|transmembrane protease, serine 11D##BC125196|TMPRSS11D|9407|transmembrane protease, serine 11D##AB002134|TMPRSS11D|9407|transmembrane protease, serine 11D##NM_004262|TMPRSS11D|9407|transmembrane protease, serine 11D##AK290289|TMPRSS11D|9407|transmembrane protease, serine 11D##AK123556|TMPRSS11BNL|401136|TMPRSS11B N terminal-like##NM_001129907|TMPRSS11BNL|401136|TMPRSS11B N terminal-like##BC126195|TMPRSS11B|132724|transmembrane protease, serine 11B##AK310210|TMPRSS11B|132724|transmembrane protease, serine 11B##AL833167|TMPRSS11B|132724|transmembrane protease, serine 11B##BX537945|TMPRSS11B|132724|transmembrane protease, serine 11B##AK290904|TMPRSS11B|132724|transmembrane protease, serine 11B##NM_182502|TMPRSS11B|132724|transmembrane protease, serine 11B##BC041119|YTHDC1|91746|YTH domain containing 1##AK056430|YTHDC1|91746|YTH domain containing 1##NM_001031732|YTHDC1|91746|YTH domain containing 1##NM_133370|YTHDC1|91746|YTH domain containing 1	0.854735	0.997769	denovo_WM_7:16:0.836	CTCF.p2:-29:0.998
chr22	37986419	37986563	reg1003764.p2	8.238	+	M87842 BC059782 NM_006498 CR456512	-10491	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-30018	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-71184	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	18071	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	18279	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	18392	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	0.985718	0.0	denovo_WM_7:-31:0.539	denovo_WM_7:-32:0.348
chr8	98643770	98643917	reg1003372.p1	8.238	+	TSC_hg19_v1_chr8_-_98290193 AK091445 AX746987	-353624	-	TSC_hg19_v1_chr8_-_98290171 BC045630 NM_033512	-353670	-	CU692280 AB384285 AB051537 TSC_hg19_v1_chr8_-_98290135	-353735	-	TSC_hg19_v1_chr8_+_98656416 BC045642 NM_178812 BC001815	12534	+	TSC_hg19_v1_chr8_+_98656437 BC014977 AF501310	12616	+	BC022825 TSC_hg19_v1_chr8_+_98656510 BC009324 AF411226 AY082966 AY974040	12770	+	AK091445|TSPYL5|85453|TSPY-like 5##BC045630|TSPYL5|85453|TSPY-like 5##NM_033512|TSPYL5|85453|TSPY-like 5##AB051537|TSPYL5|85453|TSPY-like 5##BC045642|MTDH|92140|metadherin##NM_178812|MTDH|92140|metadherin##BC001815|MTDH|92140|metadherin##BC014977|MTDH|92140|metadherin##AF501310|MTDH|92140|metadherin##BC022825|MTDH|92140|metadherin##BC009324|MTDH|92140|metadherin##AF411226|MTDH|92140|metadherin##AY082966|MTDH|92140|metadherin##AY974040|MTDH|92140|metadherin	1.947381	0.0	denovo_WM_7:27:0.919	denovo_WM_7:43:0.908
chr15	34620245	34620425	reg1002849.p3	8.236	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-9357	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-103095	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-118034	-	AF105366 AF531258 NM_001042497 NM_133647	8709	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	9628	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	9922	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.991234	0.0	denovo_WM_7:-13:0.322	denovo_WM_7:-15:0.553
chr22	31141672	31141808	reg1002496.p1	8.236	+	AF323731 NM_030758 AK097581 AK294007 BC118914 AB051451 AB384622 AF288741	-50895	+	BC031973 TSC_hg19_v1_chr22_+_31063955	-77806	+	TSC_hg19_v1_chr22_-_31063837 BC030987 BC028724 AF461689 AK056074 NM_152511	-77905	-	AB020659 NM_014941	222446	-	AK056480 TSC_hg19_v1_chr22_+_31366813	224997	+	TSC_hg19_v1_chr22_+_31477303 NM_006932 NM_134269 NM_134270 AK128719 AF064238 AJ010306 AY061971 AY061972 Y13492 AK096953 AK293681 BC034237 AK300854	335542	+	AF323731|OSBP2|23762|oxysterol binding protein 2##NM_030758|OSBP2|23762|oxysterol binding protein 2##AK097581|OSBP2|23762|oxysterol binding protein 2##AK294007|OSBP2|23762|oxysterol binding protein 2##BC118914|OSBP2|23762|oxysterol binding protein 2##AB051451|OSBP2|23762|oxysterol binding protein 2##AF288741|OSBP2|23762|oxysterol binding protein 2##BC030987|DUSP18|150290|dual specificity phosphatase 18##BC028724|DUSP18|150290|dual specificity phosphatase 18##AF461689|DUSP18|150290|dual specificity phosphatase 18##AK056074|DUSP18|150290|dual specificity phosphatase 18##NM_152511|DUSP18|150290|dual specificity phosphatase 18##AB020659|MORC2|22880|MORC family CW-type zinc finger 2##NM_014941|MORC2|22880|MORC family CW-type zinc finger 2##NM_006932|SMTN|6525|smoothelin##NM_134269|SMTN|6525|smoothelin##NM_134270|SMTN|6525|smoothelin##AK128719|SMTN|6525|smoothelin##AF064238|SMTN|6525|smoothelin##AJ010306|SMTN|6525|smoothelin##AY061971|SMTN|6525|smoothelin##AY061972|SMTN|6525|smoothelin##Y13492|SMTN|6525|smoothelin##AK096953|SMTN|6525|smoothelin##AK293681|SMTN|6525|smoothelin##BC034237|SMTN|6525|smoothelin##AK300854|SMTN|6525|smoothelin	1.3579	0.0	denovo_WM_7:58:0.348
chr1	198768404	198768553	reg1003665.p2	8.234	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-160148	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-160253	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-160305	+	TSC_hg19_v1_chr1_-_198906559 EF413001	138069	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1228391	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1243246	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	1.989871	0.0	denovo_WM_7:12:0.976	denovo_WM_7:27:0.519	denovo_WM_7:28:0.479
chr1	51954259	51954399	reg1000156.p2	8.233	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-66563	-	AF007170 NM_001144832	-143591	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-158097	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	30594	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	30695	-	NM_024586 NM_148906 NM_148908 NM_148909	128216	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.0	0.0	
chr17	63708736	63708886	reg1003800.p1	8.233	+	CR933657 TSC_hg19_v1_chr17_-_63557767	-151043	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	-151132	-	BC006295 TSC_hg19_v1_chr17_-_63556453	-152336	-	BC029524 NM_001037325	113849	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	479370	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	516714	-	CR933657|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##BC006295|AXIN2|8313|axin 2##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)	0.0	0.0	
chr12	56966757	56966901	reg1000090.p1	8.232	+	TSC_hg19_v1_chr12_+_56915603 NM_002898 BC072679 AK308885 AK293315 AK304540 D28483 AK299580 BC027863 CU693300	-51132	+	AK289471 BC025661 BC036929 AK000467 AF110330 AK303772 AF223944 AK294822 BC119767 BC119768 BC059370 BC048344 NM_013267	-84789	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	-104477	+	AF000422 TSC_hg19_v1_chr12_-_57006969	40087	-	AK023830 TSC_hg19_v1_chr12_-_57009380	42547	-	AK023842 TSC_hg19_v1_chr12_-_57024088	57213	-	NM_002898|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC072679|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK308885|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK293315|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK304540|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##D28483|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK299580|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC027863|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK289471|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC025661|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC036929|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK000467|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF110330|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK303772|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF223944|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK294822|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119767|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119768|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC059370|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC048344|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_013267|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4##AF000422|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023830|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023842|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A	0.999639	0.0	denovo_WM_7:19:0.425	denovo_WM_7:20:0.425
chr4	95128751	95128917	reg1003561.p1	8.232	+	TSC_hg19_v1_chr4_+_95128758 NM_001128430 AK027490 BC017953 AB032948	-23	+	BC113623 BC113625 BC069145 AB464463 BC069594 BC069604 CU686920 EU446465 HQ258191 NM_005172 BC069578	-378773	+	AB209318 NM_001510 AK308611	-1903242	+	TSC_hg19_v1_chr4_+_95129015 NM_001128429 NM_020159 BC045534 AY008271 BC041800	280	+	TSC_hg19_v1_chr4_-_95263988 BC020734 AK290075 NM_014485	135172	-	TSC_hg19_v1_chr4_+_95373030 AY345240 NM_001011513 NM_001011515 NM_001011516 NM_006457	244188	+	NM_001128430|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AK027490|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC017953|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AB032948|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC113623|ATOH1|474|atonal homolog 1 (Drosophila)##BC113625|ATOH1|474|atonal homolog 1 (Drosophila)##BC069145|ATOH1|474|atonal homolog 1 (Drosophila)##BC069594|ATOH1|474|atonal homolog 1 (Drosophila)##BC069604|ATOH1|474|atonal homolog 1 (Drosophila)##EU446465|ATOH1|474|atonal homolog 1 (Drosophila)##HQ258191|ATOH1|474|atonal homolog 1 (Drosophila)##NM_005172|ATOH1|474|atonal homolog 1 (Drosophila)##BC069578|ATOH1|474|atonal homolog 1 (Drosophila)##AB209318|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001510|GRID2|2895|glutamate receptor, ionotropic, delta 2##AK308611|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001128429|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_020159|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC045534|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AY008271|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC041800|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC020734|HPGDS|27306|hematopoietic prostaglandin D synthase##AK290075|HPGDS|27306|hematopoietic prostaglandin D synthase##NM_014485|HPGDS|27306|hematopoietic prostaglandin D synthase##AY345240|PDLIM5|10611|PDZ and LIM domain 5##NM_001011513|PDLIM5|10611|PDZ and LIM domain 5##NM_001011515|PDLIM5|10611|PDZ and LIM domain 5##NM_001011516|PDLIM5|10611|PDZ and LIM domain 5##NM_006457|PDLIM5|10611|PDZ and LIM domain 5	0.990712	0.0	denovo_WM_7:10:0.906
chr1	46201375	46201555	reg1000867.p2	8.230	+	NM_016486 TSC_hg19_v1_chr1_+_46153865 AK024682 AK308613 BC104636 BC064539 BC013608 AF151063 BC034147 BC046130 BC121117 BC133692	-47590	+	TSC_hg19_v1_chr1_-_46152195 BC068578 NM_021639	-49223	-	BC128177 BC128178 BC029888 BC065201 BC110988 AK310879 AK057646 AK303939 AK298104 NM_001114938 NM_001190182	-111781	-	BC032544 TSC_hg19_v1_chr1_-_46216325 AK023880 NM_001145349 NM_005897	14934	-	TSC_hg19_v1_chr1_+_46269283 AB047005 NM_015112 BC065499	67833	+	TSC_hg19_v1_chr1_+_46379267 AK027123 AK309510	177797	+	NM_016486|TMEM69|51249|transmembrane protein 69##AK024682|TMEM69|51249|transmembrane protein 69##BC104636|TMEM69|51249|transmembrane protein 69##BC064539|TMEM69|51249|transmembrane protein 69##BC013608|TMEM69|51249|transmembrane protein 69##AF151063|TMEM69|51249|transmembrane protein 69##BC034147|TMEM69|51249|transmembrane protein 69##BC046130|TMEM69|51249|transmembrane protein 69##BC121117|TMEM69|51249|transmembrane protein 69##BC133692|TMEM69|51249|transmembrane protein 69##BC068578|GPBP1L1|60313|GC-rich promoter binding protein 1-like 1##NM_021639|GPBP1L1|60313|GC-rich promoter binding protein 1-like 1##BC128177|CCDC17|149483|coiled-coil domain containing 17##BC128178|CCDC17|149483|coiled-coil domain containing 17##BC029888|CCDC17|149483|coiled-coil domain containing 17##BC065201|CCDC17|149483|coiled-coil domain containing 17##BC110988|CCDC17|149483|coiled-coil domain containing 17##AK310879|CCDC17|149483|coiled-coil domain containing 17##AK057646|CCDC17|149483|coiled-coil domain containing 17##AK303939|CCDC17|149483|coiled-coil domain containing 17##AK298104|CCDC17|149483|coiled-coil domain containing 17##NM_001114938|CCDC17|149483|coiled-coil domain containing 17##NM_001190182|CCDC17|149483|coiled-coil domain containing 17##BC032544|IPP|3652|intracisternal A particle-promoted polypeptide##AK023880|IPP|3652|intracisternal A particle-promoted polypeptide##NM_001145349|IPP|3652|intracisternal A particle-promoted polypeptide##NM_005897|IPP|3652|intracisternal A particle-promoted polypeptide##AB047005|MAST2|23139|microtubule associated serine/threonine kinase 2##NM_015112|MAST2|23139|microtubule associated serine/threonine kinase 2##BC065499|MAST2|23139|microtubule associated serine/threonine kinase 2##AK027123|MAST2|23139|microtubule associated serine/threonine kinase 2##AK309510|MAST2|23139|microtubule associated serine/threonine kinase 2	0.0	0.0	
chr14	65781619	65781791	reg1004169.p1	8.229	+	TSC_hg19_v1_chr14_-_65569238 BC013669 NM_002382 NM_145112 NM_145113 NM_145114 NM_145116 NM_197957 AK290929 AL833643	-212467	-	AB463901 AY353088 CR542191 CU693010 X60287 M64240 AK292630 AK292189 BC003525 BC004516 AK290130 TSC_hg19_v1_chr14_-_65569205 BC036092 BC027924 BC025685	-212573	-	BC035148 BC052775 TSC_hg19_v1_chr14_+_65453967	-327739	+	AJ536056 NM_004480 NM_178155 NM_178156	95604	+	TSC_hg19_v1_chr14_+_65878582 BC142958 AK292413 AK294242 Y17976 Y17977	96915	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	97621	-	BC013669|MAX|4149|MYC associated factor X##NM_002382|MAX|4149|MYC associated factor X##NM_145112|MAX|4149|MYC associated factor X##NM_145113|MAX|4149|MYC associated factor X##NM_145114|MAX|4149|MYC associated factor X##NM_145116|MAX|4149|MYC associated factor X##NM_197957|MAX|4149|MYC associated factor X##AK290929|MAX|4149|MYC associated factor X##AL833643|MAX|4149|MYC associated factor X##AY353088|MAX|4149|MYC associated factor X##CR542191|MAX|4149|MYC associated factor X##X60287|MAX|4149|MYC associated factor X##M64240|MAX|4149|MYC associated factor X##AK292630|MAX|4149|MYC associated factor X##AK292189|MAX|4149|MYC associated factor X##BC003525|MAX|4149|MYC associated factor X##BC004516|MAX|4149|MYC associated factor X##AK290130|MAX|4149|MYC associated factor X##BC036092|MAX|4149|MYC associated factor X##BC027924|MAX|4149|MYC associated factor X##BC025685|MAX|4149|MYC associated factor X##AJ536056|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_004480|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178155|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178156|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC142958|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##AK292413|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##AK294242|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17976|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17977|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431	0.997791	0.0	
chr17	7788708	7788799	reg1002850.p1	8.229	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	-642	+	TSC_hg19_v1_chr17_+_7761320 BC060779 AK289520	-27408	+	BC033861 NM_032356 BC051846 TSC_hg19_v1_chr17_-_7761246	-27545	-	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	3348	+	TSC_hg19_v1_chr17_+_7812703 AK096555	24007	+	AF016411 BC096232 BC096233 BC096234 BC099634 NM_004732	43999	-	NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##BC060779|CYB5D1|124637|cytochrome b5 domain containing 1##AK289520|CYB5D1|124637|cytochrome b5 domain containing 1##BC033861|LSMD1|84316|LSM domain containing 1##NM_032356|LSMD1|84316|LSM domain containing 1##BC051846|LSMD1|84316|LSM domain containing 1##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3##AF016411|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096232|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096233|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096234|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC099634|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##NM_004732|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3	0.0	0.0	
chr3	52319283	52319433	reg1004006.p2	8.229	+	TSC_hg19_v1_chr3_-_52312656 NM_025222	-6702	-	TSC_hg19_v1_chr3_-_52312406 AB590669 AY358264 BX648628 AK291380	-6968	-	BC018941 AK074290 TSC_hg19_v1_chr3_-_52294468	-24911	-	AF448855 AY172690 BC036862 NM_001144951 NM_145262 TSC_hg19_v1_chr3_+_52321852 AK074215	2485	+	TSC_hg19_v1_chr3_+_52321862 BC042151 BC021896	2516	+	AB037831 AB290163 NM_015512	30976	+	NM_025222|WDR82|80335|WD repeat domain 82##AY358264|WDR82|80335|WD repeat domain 82##BX648628|WDR82|80335|WD repeat domain 82##AK291380|WDR82|80335|WD repeat domain 82##BC018941|WDR82|80335|WD repeat domain 82##AK074290|WDR82|80335|WD repeat domain 82##AF448855|GLYCTK|132158|glycerate kinase##AY172690|GLYCTK|132158|glycerate kinase##BC036862|GLYCTK|132158|glycerate kinase##NM_001144951|GLYCTK|132158|glycerate kinase##NM_145262|GLYCTK|132158|glycerate kinase##AK074215|GLYCTK|132158|glycerate kinase##BC042151|GLYCTK|132158|glycerate kinase##BC021896|GLYCTK|132158|glycerate kinase##AB037831|DNAH1|25981|dynein, axonemal, heavy chain 1##AB290163|DNAH1|25981|dynein, axonemal, heavy chain 1##NM_015512|DNAH1|25981|dynein, axonemal, heavy chain 1	1.078118	0.0	denovo_WM_7:-18:0.953
chr9	115393723	115393874	reg1003408.p2	8.227	+	TSC_hg19_v1_chr9_+_115336888 AK056181	-56868	+	BC105048 BC113515 BC143372 BC143424 TSC_hg19_v1_chr9_+_115249466	-144386	+	TSC_hg19_v1_chr9_+_115249149 AK096613 NM_133465	-144636	+	AF161411 TSC_hg19_v1_chr9_-_115480339 AF161409	86540	-	TSC_hg19_v1_chr9_-_115480398 BC065210 AK310007 BC014881 NM_021218 AK000637	86590	-	TSC_hg19_v1_chr9_+_115513056 NM_001012994	119293	+	AK056181|KIAA1958|158405|KIAA1958##BC105048|KIAA1958|158405|KIAA1958##BC113515|KIAA1958|158405|KIAA1958##BC143372|KIAA1958|158405|KIAA1958##BC143424|KIAA1958|158405|KIAA1958##AK096613|KIAA1958|158405|KIAA1958##NM_133465|KIAA1958|158405|KIAA1958##AF161411|C9orf80|58493|chromosome 9 open reading frame 80##AF161409|C9orf80|58493|chromosome 9 open reading frame 80##BC065210|C9orf80|58493|chromosome 9 open reading frame 80##AK310007|C9orf80|58493|chromosome 9 open reading frame 80##BC014881|C9orf80|58493|chromosome 9 open reading frame 80##NM_021218|C9orf80|58493|chromosome 9 open reading frame 80##AK000637|C9orf80|58493|chromosome 9 open reading frame 80##NM_001012994|SNX30|401548|sorting nexin family member 30	0.99995	0.0	
chr11	47039720	47039851	reg1002358.p1	8.226	+	TSC_hg19_v1_chr11_+_46958328 AK316318 NM_001003676 NM_001003677 NM_001003678 NM_024113 AK315639 BC001860 BC009455 AL136575 BC052291 BC013988 AK300813 AK025863 AK293609 AB528079 AM393584 AM393807 CR457351 CU679361 CU680726	-81493	+	TSC_hg19_v1_chr11_-_46940102 AB384531 AB231861 BC136667 BC136668 AB084910 NM_002334 BC110808	-99723	-	TSC_hg19_v1_chr11_-_46867841 NM_001008938 NM_014756	-171932	-	AK301785 AL834337 EU832352 EU832437 AK300347 BC036823 AK027482 TSC_hg19_v1_chr11_-_47198413 AK304541 BC030148	158614	-	TSC_hg19_v1_chr11_-_47198431 AK315992 AK098324	158648	-	NM_001242832 NM_032389	158890	-	AK316318|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003676|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003677|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003678|C11orf49|79096|chromosome 11 open reading frame 49##NM_024113|C11orf49|79096|chromosome 11 open reading frame 49##AK315639|C11orf49|79096|chromosome 11 open reading frame 49##BC001860|C11orf49|79096|chromosome 11 open reading frame 49##BC009455|C11orf49|79096|chromosome 11 open reading frame 49##AL136575|C11orf49|79096|chromosome 11 open reading frame 49##BC052291|C11orf49|79096|chromosome 11 open reading frame 49##BC013988|C11orf49|79096|chromosome 11 open reading frame 49##AK300813|C11orf49|79096|chromosome 11 open reading frame 49##AK025863|C11orf49|79096|chromosome 11 open reading frame 49##AK293609|C11orf49|79096|chromosome 11 open reading frame 49##AM393584|C11orf49|79096|chromosome 11 open reading frame 49##AM393807|C11orf49|79096|chromosome 11 open reading frame 49##CR457351|C11orf49|79096|chromosome 11 open reading frame 49##AB231861|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136667|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136668|LRP4|4038|low density lipoprotein receptor-related protein 4##AB084910|LRP4|4038|low density lipoprotein receptor-related protein 4##NM_002334|LRP4|4038|low density lipoprotein receptor-related protein 4##NM_001008938|CKAP5|9793|cytoskeleton associated protein 5##NM_014756|CKAP5|9793|cytoskeleton associated protein 5##AK301785|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AL834337|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832352|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832437|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK300347|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC036823|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK027482|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK304541|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC030148|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK315992|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK098324|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_001242832|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_032389|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2	0.999699	0.0	
chr8	80605389	80605541	reg1002458.p1	8.224	+	AK292737 TSC_hg19_v1_chr8_+_80523376 BC006302 S82024 AB528346 BT020034 CR456833 DQ892719 DQ895968 CU675343	-82062	+	TSC_hg19_v1_chr8_+_80523354 AK297594 AK308557 AK297485	-82106	+	AK299500 TSC_hg19_v1_chr8_+_80523339	-82126	+	AF311883 BT020065 AB489173 CU674904 AF151522 AF176422 AJ272214 BC001873 AK074641 AK313271 AF232239 TSC_hg19_v1_chr8_-_80680006 AK092437 AK226041 AF254637 NM_001040708 NM_012258	74532	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	337037	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	387564	-	AK292737|STMN2|11075|stathmin-like 2##BC006302|STMN2|11075|stathmin-like 2##S82024|STMN2|11075|stathmin-like 2##BT020034|STMN2|11075|stathmin-like 2##CR456833|STMN2|11075|stathmin-like 2##DQ892719|STMN2|11075|stathmin-like 2##DQ895968|STMN2|11075|stathmin-like 2##AK297594|STMN2|11075|stathmin-like 2##AK308557|STMN2|11075|stathmin-like 2##AK297485|STMN2|11075|stathmin-like 2##AK299500|STMN2|11075|stathmin-like 2##AF311883|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT020065|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF151522|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF176422|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AJ272214|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BC001873|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK074641|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK313271|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF232239|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK092437|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK226041|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF254637|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_001040708|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_012258|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52	0.0	0.0	
chr13	96033110	96033253	reg1003077.p1	8.223	+	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	-79469	-	X65666 X71136 AB464716 NM_007084	-668863	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-779079	+	NM_001160100 NM_182848 AK055855	52673	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	171793	+	AB385415 AF272347 AF272348 TSC_hg19_v1_chr13_-_96294398	261162	-	AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10##AF272347|DZIP1|22873|DAZ interacting protein 1##AF272348|DZIP1|22873|DAZ interacting protein 1	0.967697	0.993528	denovo_WM_7:39:0.748	CTCF.p2:-44:0.994
chr7	25109715	25109846	reg1003098.p1	8.223	+	AF323727 AY008372 TSC_hg19_v1_chr7_-_25019775 AF392444 BC017731 NM_015550 NM_145320 NM_145321 NM_145322 AB014604	-90036	-	TSC_hg19_v1_chr7_-_24797557 NM_001127454 NM_004403	-312183	-	TSC_hg19_v1_chr7_-_24797316 BC125065 BC125066 AF073308	-312441	-	AL713681 BC005299 BC008475 BC008477 BC009578 BC009579 BC009582 BC009587 BC009602 BC014359 BC014361 BC015130 BC016006 BC021994 BC022330 BC067222 BC068464 BC070156 BC071761 TSC_hg19_v1_chr7_-_25164884 BC070346 BC009607	55097	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	55160	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	110091	-	AF323727|OSBPL3|26031|oxysterol binding protein-like 3##AY008372|OSBPL3|26031|oxysterol binding protein-like 3##AF392444|OSBPL3|26031|oxysterol binding protein-like 3##BC017731|OSBPL3|26031|oxysterol binding protein-like 3##NM_015550|OSBPL3|26031|oxysterol binding protein-like 3##NM_145320|OSBPL3|26031|oxysterol binding protein-like 3##NM_145321|OSBPL3|26031|oxysterol binding protein-like 3##NM_145322|OSBPL3|26031|oxysterol binding protein-like 3##AB014604|OSBPL3|26031|oxysterol binding protein-like 3##NM_001127454|DFNA5|1687|deafness, autosomal dominant 5##NM_004403|DFNA5|1687|deafness, autosomal dominant 5##BC125065|DFNA5|1687|deafness, autosomal dominant 5##BC125066|DFNA5|1687|deafness, autosomal dominant 5##AF073308|DFNA5|1687|deafness, autosomal dominant 5##AL713681|CYCS|54205|cytochrome c, somatic##BC005299|CYCS|54205|cytochrome c, somatic##BC008475|CYCS|54205|cytochrome c, somatic##BC008477|CYCS|54205|cytochrome c, somatic##BC009578|CYCS|54205|cytochrome c, somatic##BC009579|CYCS|54205|cytochrome c, somatic##BC009582|CYCS|54205|cytochrome c, somatic##BC009587|CYCS|54205|cytochrome c, somatic##BC009602|CYCS|54205|cytochrome c, somatic##BC014359|CYCS|54205|cytochrome c, somatic##BC014361|CYCS|54205|cytochrome c, somatic##BC015130|CYCS|54205|cytochrome c, somatic##BC016006|CYCS|54205|cytochrome c, somatic##BC021994|CYCS|54205|cytochrome c, somatic##BC022330|CYCS|54205|cytochrome c, somatic##BC067222|CYCS|54205|cytochrome c, somatic##BC068464|CYCS|54205|cytochrome c, somatic##BC070156|CYCS|54205|cytochrome c, somatic##BC071761|CYCS|54205|cytochrome c, somatic##BC070346|CYCS|54205|cytochrome c, somatic##BC009607|CYCS|54205|cytochrome c, somatic##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31	2.035209	0.934878	CTCF.p2:-3:0.935	denovo_WM_7:71:0.237	denovo_WM_7:72:0.444	denovo_WM_7:74:0.263	denovo_WM_7:-82:0.710
chr12	50794227	50794385	reg1002957.p1	8.222	+	BC054024 AL833333 NM_001145475	-3909	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	-117011	-	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	-177850	-	NM_001170803 NM_001170804 NM_001170808 NM_052879 NM_199188 NM_199190 TSC_hg19_v1_chr12_+_50794671 AL832198 CR936626 AL833272 BC022377 BC063479 AF370416 AK291746 AY004310 AK055521 BX647457 CU687740 EU831655 EU831738 EU831909 EU832003	386	+	TSC_hg19_v1_chr12_+_50869532 AF131755	75281	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	104449	+	BC054024|FAM186A|121006|family with sequence similarity 186, member A##AL833333|FAM186A|121006|family with sequence similarity 186, member A##NM_001145475|FAM186A|121006|family with sequence similarity 186, member A##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1##AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##NM_001170803|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170804|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170808|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_052879|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199188|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199190|LARP4|113251|La ribonucleoprotein domain family, member 4##AL832198|LARP4|113251|La ribonucleoprotein domain family, member 4##CR936626|LARP4|113251|La ribonucleoprotein domain family, member 4##AL833272|LARP4|113251|La ribonucleoprotein domain family, member 4##BC022377|LARP4|113251|La ribonucleoprotein domain family, member 4##BC063479|LARP4|113251|La ribonucleoprotein domain family, member 4##AF370416|LARP4|113251|La ribonucleoprotein domain family, member 4##AK291746|LARP4|113251|La ribonucleoprotein domain family, member 4##AY004310|LARP4|113251|La ribonucleoprotein domain family, member 4##AK055521|LARP4|113251|La ribonucleoprotein domain family, member 4##BX647457|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831655|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831738|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831909|LARP4|113251|La ribonucleoprotein domain family, member 4##EU832003|LARP4|113251|La ribonucleoprotein domain family, member 4##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)	0.988366	0.0	denovo_WM_7:-40:0.708
chr20	34726707	34726847	reg1004364.p1	8.221	+	CR936825 NM_177996	-26475	+	TSC_hg19_v1_chr20_+_34680631 AK096848 AK299817 AK126875 BC040259	-46126	+	TSC_hg19_v1_chr20_-_34638883 BC011592 AK090641 AX746554 BC031254	-87873	-	TSC_hg19_v1_chr20_+_34742659 NM_012156 AB002336	15888	+	TSC_hg19_v1_chr20_+_34824399 AL117419	97612	+	TSC_hg19_v1_chr20_+_34824402 BC001751 BC019311 NM_015511	97646	+	CR936825|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##NM_177996|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##AK096848|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##AK299817|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##AK126875|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##BC040259|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##BC011592|LOC647979|647979|uncharacterized LOC647979##AK090641|LOC647979|647979|uncharacterized LOC647979##NM_012156|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##AB002336|EPB41L1|2036|erythrocyte membrane protein band 4.1-like 1##AL117419|C20orf4|25980|chromosome 20 open reading frame 4##BC001751|C20orf4|25980|chromosome 20 open reading frame 4##BC019311|C20orf4|25980|chromosome 20 open reading frame 4##NM_015511|C20orf4|25980|chromosome 20 open reading frame 4	0.885614	0.116549	denovo_WM_7:35:0.847
chr5	43086367	43086502	reg1003676.p1	8.221	+	AB463523 BC067873 AY032883 NM_001014279	-46138	-	TSC_hg19_v1_chr5_-_42993436 AK056817	-92988	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-274443	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	34567	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	35180	+	AK057343 NM_003432 TSC_hg19_v1_chr5_+_43121669 AK310735 BC017923	35250	+	BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131##AK057343|ZNF131|7690|zinc finger protein 131##NM_003432|ZNF131|7690|zinc finger protein 131##AK310735|ZNF131|7690|zinc finger protein 131##BC017923|ZNF131|7690|zinc finger protein 131	1.094594	0.0	
chr7	101948958	101949138	reg1001630.p1	8.221	+	TSC_hg19_v1_chr7_+_101928431 AB000520	-20605	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	-20651	+	M74099 NM_181552	-488167	+	NM_001146210	47840	-	TSC_hg19_v1_chr7_+_102004329 NM_001242713 BC063572 AK098276	55263	+	TSC_hg19_v1_chr7_+_102004338 BC048257 BC066362	55304	+	AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_020979|SH2B2|10603|SH2B adaptor protein 2##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)##NM_001242713|LOC100289561|100289561|uncharacterized LOC100289561##BC063572|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##AK098276|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough	0.0	0.0	
chr12	122020159	122020277	reg1003284.p1	8.219	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-1304	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-1959	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-115144	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	44425	+	BC057760 NM_173855	87341	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	130526	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	0.99994	0.0	
chr19	14414269	14414422	reg1003701.p1	8.218	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-97297	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-153545	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-166354	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	77704	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	77910	+	TSC_hg19_v1_chr19_-_14529877 AK301847	115544	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	1.997499	0.0	
chr10	11720132	11720297	reg1002551.p1	8.217	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	-66578	-	NM_001080491	-145941	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-512722	+	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	64184	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	145144	+	AK056703 TSC_hg19_v1_chr10_-_11936707	216488	-	AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47##AK056703|LOC219731|219731|uncharacterized LOC219731	0.660973	0.0	denovo_WM_7:-15:0.421
chr9	46190955	46191077	reg1004372.p1	8.216	+	TSC_hg19_v1_chr9_+_45441926 BC006438	-749090	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-2506173	+	NM_001145196	-2560287	-	BC040528 NM_001113541 NM_015667	19318593	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	20266285	+	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	20267480	-	BC006438|LOC100132167|100132167|uncharacterized LOC100132167##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.999297	0.0	
chr10	3847433	3847599	reg1003846.p2	8.215	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-20007	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-20205	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-632511	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1020902	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1157998	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1158107	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.0	0.0	
chr7	4764973	4765095	reg1003770.p2	8.215	+	TSC_hg19_v1_chr7_+_4722091 AX721089 AK302243 AK122663	-42783	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	-43196	+	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	-1424035	+	TSC_hg19_v1_chr7_+_4815264 NM_014855 BC037399	50227	+	TSC_hg19_v1_chr7_+_4815296 AB007875	50252	+	DQ891226 DQ894411 AF218840 BC036653 NM_020144 TSC_hg19_v1_chr7_-_4901662 AK312788	136515	-	AK302243|FOXK1|221937|forkhead box K1##AK122663|FOXK1|221937|forkhead box K1##NM_001037165|FOXK1|221937|forkhead box K1##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_014855|KIAA0415|9907|KIAA0415##BC037399|KIAA0415|9907|KIAA0415##AB007875|KIAA0415|9907|KIAA0415##DQ891226|PAPOLB|56903|poly(A) polymerase beta (testis specific)##DQ894411|PAPOLB|56903|poly(A) polymerase beta (testis specific)##AF218840|PAPOLB|56903|poly(A) polymerase beta (testis specific)##BC036653|PAPOLB|56903|poly(A) polymerase beta (testis specific)##NM_020144|PAPOLB|56903|poly(A) polymerase beta (testis specific)##AK312788|PAPOLB|56903|poly(A) polymerase beta (testis specific)	0.0	0.0	
chr12	50626100	50626242	reg1004400.p1	8.213	+	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	-9715	-	AK023649 AF157325 NM_001243775	-30862	-	TSC_hg19_v1_chr12_-_50561153 AK298924	-64946	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	51124	-	BC054024 AL833333 NM_001145475	164226	-	NM_001170803 NM_001170804 NM_001170808 NM_052879 NM_199188 NM_199190 TSC_hg19_v1_chr12_+_50794671 AL832198 CR936626 AL833272 BC022377 BC063479 AF370416 AK291746 AY004310 AK055521 BX647457 CU687740 EU831655 EU831738 EU831909 EU832003	168521	+	AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AK298924|CERS5|91012|ceramide synthase 5##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1##BC054024|FAM186A|121006|family with sequence similarity 186, member A##AL833333|FAM186A|121006|family with sequence similarity 186, member A##NM_001145475|FAM186A|121006|family with sequence similarity 186, member A##NM_001170803|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170804|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170808|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_052879|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199188|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199190|LARP4|113251|La ribonucleoprotein domain family, member 4##AL832198|LARP4|113251|La ribonucleoprotein domain family, member 4##CR936626|LARP4|113251|La ribonucleoprotein domain family, member 4##AL833272|LARP4|113251|La ribonucleoprotein domain family, member 4##BC022377|LARP4|113251|La ribonucleoprotein domain family, member 4##BC063479|LARP4|113251|La ribonucleoprotein domain family, member 4##AF370416|LARP4|113251|La ribonucleoprotein domain family, member 4##AK291746|LARP4|113251|La ribonucleoprotein domain family, member 4##AY004310|LARP4|113251|La ribonucleoprotein domain family, member 4##AK055521|LARP4|113251|La ribonucleoprotein domain family, member 4##BX647457|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831655|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831738|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831909|LARP4|113251|La ribonucleoprotein domain family, member 4##EU832003|LARP4|113251|La ribonucleoprotein domain family, member 4	0.956773	0.0	denovo_WM_7:-7:0.645
chr1	85328647	85328793	reg1003836.p2	8.213	+	AY367055 TSC_hg19_v1_chr1_-_85156128 AK316472 AK307336 BC064389 BC033637 AK294057 AK292475 NM_001166295 NM_001166417 AL133046 AB023140 NM_001166293 NM_001166294 NM_014021	-172644	-	TSC_hg19_v1_chr1_-_85040102 CU692842 M95767 AK075423 BC065191 AK298703 AK314640 BC126333 BC126335 BC024007 BC096752 NM_004388	-288614	-	TSC_hg19_v1_chr1_-_84972262 NM_005274	-356451	-	TSC_hg19_v1_chr1_-_85358890 AK308283 NM_012152	30166	-	BC104891 BC104893 TSC_hg19_v1_chr1_-_85462793 AK094010 AK309858 AX748410 NM_153259	133988	-	AF475085 AK001868 BC060765 TSC_hg19_v1_chr1_-_85514153 AK292206	185425	-	AY367055|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK316472|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK307336|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC064389|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC033637|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK294057|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK292475|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166295|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166417|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AL133046|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AB023140|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166293|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166294|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_014021|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##M95767|CTBS|1486|chitobiase, di-N-acetyl-##AK075423|CTBS|1486|chitobiase, di-N-acetyl-##BC065191|CTBS|1486|chitobiase, di-N-acetyl-##AK298703|CTBS|1486|chitobiase, di-N-acetyl-##AK314640|CTBS|1486|chitobiase, di-N-acetyl-##BC126333|CTBS|1486|chitobiase, di-N-acetyl-##BC126335|CTBS|1486|chitobiase, di-N-acetyl-##BC024007|CTBS|1486|chitobiase, di-N-acetyl-##BC096752|CTBS|1486|chitobiase, di-N-acetyl-##NM_004388|CTBS|1486|chitobiase, di-N-acetyl-##NM_005274|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##AK308283|LPAR3|23566|lysophosphatidic acid receptor 3##NM_012152|LPAR3|23566|lysophosphatidic acid receptor 3##BC104891|MCOLN2|255231|mucolipin 2##BC104893|MCOLN2|255231|mucolipin 2##AK094010|MCOLN2|255231|mucolipin 2##AK309858|MCOLN2|255231|mucolipin 2##NM_153259|MCOLN2|255231|mucolipin 2##AF475085|MCOLN3|55283|mucolipin 3##AK001868|MCOLN3|55283|mucolipin 3##BC060765|MCOLN3|55283|mucolipin 3##AK292206|MCOLN3|55283|mucolipin 3	1.2633	0.0	denovo_WM_7:30:0.927
chr6	99932672	99932852	reg1002255.p3	8.213	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	-59595	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	-59948	+	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	-83471	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	30507	-	TSC_hg19_v1_chr6_-_99963309 BC005991	30548	-	TSC_hg19_v1_chr6_+_99968921 BX647075 NM_001195131	36137	+	BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45##BC005991|USP45|85015|ubiquitin specific peptidase 45##BX647075|LOC100130890|100130890|uncharacterized LOC100130890##NM_001195131|LOC100130890|100130890|uncharacterized LOC100130890	0.998493	0.0	denovo_WM_7:-87:0.457	denovo_WM_7:-88:0.457
chr22	31634073	31634223	reg1003773.p1	8.212	+	TSC_hg19_v1_chr22_+_31608285 CR456513 CU013112 CU013400 AB587469 AB451269 AB451396	-25801	+	AK291640 D45906 TSC_hg19_v1_chr22_+_31608280	-25868	+	NM_005569 TSC_hg19_v1_chr22_+_31608257 AK093554 AX748198	-25892	+	AK299112 TSC_hg19_v1_chr22_+_31644324 NM_001031801 NM_016733	10182	+	TSC_hg19_v1_chr22_+_31644372 AK314391 AK293774 AL117466 D85527 BC013051	10272	+	TSC_hg19_v1_chr22_-_31686709 BC041903 AK093768	52575	-	CR456513|LIMK2|3985|LIM domain kinase 2##CU013112|LIMK2|3985|LIM domain kinase 2##CU013400|LIMK2|3985|LIM domain kinase 2##AB451269|LIMK2|3985|LIM domain kinase 2##AB451396|LIMK2|3985|LIM domain kinase 2##AK291640|LIMK2|3985|LIM domain kinase 2##D45906|LIMK2|3985|LIM domain kinase 2##NM_005569|LIMK2|3985|LIM domain kinase 2##AK093554|LIMK2|3985|LIM domain kinase 2##AK299112|LIMK2|3985|LIM domain kinase 2##NM_001031801|LIMK2|3985|LIM domain kinase 2##NM_016733|LIMK2|3985|LIM domain kinase 2##AK314391|LIMK2|3985|LIM domain kinase 2##AK293774|LIMK2|3985|LIM domain kinase 2##AL117466|LIMK2|3985|LIM domain kinase 2##D85527|LIMK2|3985|LIM domain kinase 2##BC013051|LIMK2|3985|LIM domain kinase 2##BC041903|PIK3IP1|113791|phosphoinositide-3-kinase interacting protein 1##AK093768|PIK3IP1|113791|phosphoinositide-3-kinase interacting protein 1	0.996096	0.0	denovo_WM_7:-36:0.249	denovo_WM_7:-37:0.249	denovo_WM_7:-38:0.249	denovo_WM_7:-39:0.249
chr9	37001708	37001888	reg1003860.p2	8.212	+	TSC_hg19_v1_chr9_+_36572891 AK222811 AK296820 D79997 AK302374 AK293284 AK293423 AK300761 AK293447 AK309470 BC014039 NM_014791 AB183428 AK299164 AK300821 AB183427 AK301131	-428874	+	TSC_hg19_v1_chr9_-_36401191 NM_194330	-600623	-	TSC_hg19_v1_chr9_-_36400891 AK093480 AX748155 AF394047 NM_194328 NM_194332	-600901	-	TSC_hg19_v1_chr9_-_37034361 NM_016734	32618	-	TSC_hg19_v1_chr9_+_37079908 AK091718	78108	+	TSC_hg19_v1_chr9_+_37080004 BC032471 BC033624 BC080614 BC067112	78210	+	AK222811|MELK|9833|maternal embryonic leucine zipper kinase##AK296820|MELK|9833|maternal embryonic leucine zipper kinase##D79997|MELK|9833|maternal embryonic leucine zipper kinase##AK302374|MELK|9833|maternal embryonic leucine zipper kinase##AK293284|MELK|9833|maternal embryonic leucine zipper kinase##AK293423|MELK|9833|maternal embryonic leucine zipper kinase##AK300761|MELK|9833|maternal embryonic leucine zipper kinase##AK293447|MELK|9833|maternal embryonic leucine zipper kinase##AK309470|MELK|9833|maternal embryonic leucine zipper kinase##BC014039|MELK|9833|maternal embryonic leucine zipper kinase##NM_014791|MELK|9833|maternal embryonic leucine zipper kinase##AB183428|MELK|9833|maternal embryonic leucine zipper kinase##AK299164|MELK|9833|maternal embryonic leucine zipper kinase##AK300821|MELK|9833|maternal embryonic leucine zipper kinase##AB183427|MELK|9833|maternal embryonic leucine zipper kinase##AK301131|MELK|9833|maternal embryonic leucine zipper kinase##NM_194330|RNF38|152006|ring finger protein 38##AK093480|RNF38|152006|ring finger protein 38##AX748155|RNF38|152006|ring finger protein 38##AF394047|RNF38|152006|ring finger protein 38##NM_194328|RNF38|152006|ring finger protein 38##NM_194332|RNF38|152006|ring finger protein 38##NM_016734|PAX5|5079|paired box 5##AK091718|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC032471|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC033624|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC080614|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene	1.923779	0.0	denovo_WM_7:16:0.927	denovo_WM_7:31:0.922
chr12	25505073	25505203	reg1003794.p1	8.210	+	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-101197	-	TSC_hg19_v1_chr12_-_25403822 BC013572	-101323	-	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-156932	+	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	201058	-	AK296816 NM_001145727	296349	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	606863	+	AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	0.057786	0.0	
chr15	41171999	41172127	reg1003204.p1	8.210	+	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	-5616	-	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-35362	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-35713	+	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	14637	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	49635	+	NM_001142776 NM_024111 TSC_hg19_v1_chr15_+_41245671 BC019625 BC001683 BC001847 AY702027	73641	+	AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)##NM_001142776|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##NM_024111|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC019625|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001683|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001847|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##AY702027|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)	0.996151	0.0	denovo_WM_7:52:0.928
chr5	131312218	131312383	reg1002929.p1	8.209	+	TSC_hg19_v1_chr5_-_131132740 NM_001008738 NM_133372	-179565	-	AK292473 TSC_hg19_v1_chr5_-_131132711	-179589	-	TSC_hg19_v1_chr5_-_131132694 BC001956	-179601	-	AB385389 AB020644 TSC_hg19_v1_chr5_-_131347331 AK294291 NM_001009185 NM_001205247 NM_015256	35001	-	AK314452 BC047453 NM_001205248 NM_001205251 BC026161 NM_001205250 DQ655980	35393	-	M20137 NM_000588 BC069472 BC066272 BC066273 BC066274 BC066275 BC066276 M17115 M14743 CU686832 HQ448457	84072	+	NM_001008738|FNIP1|96459|folliculin interacting protein 1##NM_133372|FNIP1|96459|folliculin interacting protein 1##AK292473|FNIP1|96459|folliculin interacting protein 1##BC001956|FNIP1|96459|folliculin interacting protein 1##AB020644|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##AK294291|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001009185|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205247|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_015256|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##AK314452|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##BC047453|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205248|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205251|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##BC026161|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##NM_001205250|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##DQ655980|ACSL6|23305|acyl-CoA synthetase long-chain family member 6##M20137|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##NM_000588|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC069472|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066272|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066273|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066274|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066275|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##BC066276|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##M17115|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##M14743|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)##HQ448457|IL3|3562|interleukin 3 (colony-stimulating factor, multiple)	1.595173	0.0	denovo_WM_7:-30:0.304	denovo_WM_7:-52:0.235	denovo_WM_7:-58:0.390
chr14	20835696	20835816	reg1003426.p2	8.208	+	TSC_hg19_v1_chr14_+_20811793 AK290079 AK300971 AK001980 AJ236912	-23960	+	TSC_hg19_v1_chr14_+_20811783 NM_001042618 NM_005484	-24009	+	TSC_hg19_v1_chr14_-_20801439 AK026233 AK225451 AK309183 AK225253 AK226037 AL161994 NM_021178 NM_182849	-34312	-	BC143812 BC126107 BC143815 NM_007110 U86136 TSC_hg19_v1_chr14_-_20881589	45827	-	NM_001109997	68044	-	AJ271669 CR457232 AB463988 DQ894806 EU176277 AF052137 AB050442 TSC_hg19_v1_chr14_-_20922951	87145	-	AK290079|PARP2|10038|poly (ADP-ribose) polymerase 2##AK300971|PARP2|10038|poly (ADP-ribose) polymerase 2##AK001980|PARP2|10038|poly (ADP-ribose) polymerase 2##AJ236912|PARP2|10038|poly (ADP-ribose) polymerase 2##NM_001042618|PARP2|10038|poly (ADP-ribose) polymerase 2##NM_005484|PARP2|10038|poly (ADP-ribose) polymerase 2##AK026233|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225451|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK309183|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225253|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK226037|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AL161994|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_021178|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182849|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC143812|TEP1|7011|telomerase-associated protein 1##BC126107|TEP1|7011|telomerase-associated protein 1##BC143815|TEP1|7011|telomerase-associated protein 1##NM_007110|TEP1|7011|telomerase-associated protein 1##U86136|TEP1|7011|telomerase-associated protein 1##NM_001109997|KLHL33|123103|kelch-like 33 (Drosophila)##AJ271669|OSGEP|55644|O-sialoglycoprotein endopeptidase##CR457232|OSGEP|55644|O-sialoglycoprotein endopeptidase##DQ894806|OSGEP|55644|O-sialoglycoprotein endopeptidase##EU176277|OSGEP|55644|O-sialoglycoprotein endopeptidase##AF052137|OSGEP|55644|O-sialoglycoprotein endopeptidase##AB050442|OSGEP|55644|O-sialoglycoprotein endopeptidase	0.998451	0.0	denovo_WM_7:26:0.720
chr22	38003425	38003605	reg1002638.p2	8.207	+	M87842 BC059782 NM_006498 CR456512	-27515	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-47042	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-88208	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	1047	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	1255	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	1368	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	0.994442	0.0	denovo_WM_7:-9:0.699	denovo_WM_7:-10:0.271
chr12	49581986	49582119	reg1003542.p2	8.206	+	TSC_hg19_v1_chr12_-_49525284 NM_006082	-56765	-	BC001128 BC009512 BC009314 BC006379 BC006481 BC010494 BC011572 BC018948 BC021564 BC009509 BC009513 DQ400107 BC000696 BC071904 TSC_hg19_v1_chr12_-_49525179 BC030820 AK026516 AK026632 AK057773 AK094717 AK098357 AK098635 AK098771 AK289354	-56881	-	BC015883 TSC_hg19_v1_chr12_-_49525141 BC017004 BC008659 K00558	-56914	-	TSC_hg19_v1_chr12_-_49582309 AK289483	332	-	TSC_hg19_v1_chr12_-_49582864 BC006468 BC050637 AF141347 AK057842 AK297775 BC057823 NM_006009 AK298838	780	-	TSC_hg19_v1_chr12_+_49658864 D28390 AK223024 BC005946 NM_032704	76811	+	NM_006082|TUBA1B|10376|tubulin, alpha 1b##BC001128|TUBA1B|10376|tubulin, alpha 1b##BC009512|TUBA1B|10376|tubulin, alpha 1b##BC009314|TUBA1B|10376|tubulin, alpha 1b##BC006379|TUBA1B|10376|tubulin, alpha 1b##BC006481|TUBA1B|10376|tubulin, alpha 1b##BC010494|TUBA1B|10376|tubulin, alpha 1b##BC011572|TUBA1B|10376|tubulin, alpha 1b##BC018948|TUBA1B|10376|tubulin, alpha 1b##BC021564|TUBA1B|10376|tubulin, alpha 1b##BC009509|TUBA1B|10376|tubulin, alpha 1b##BC009513|TUBA1B|10376|tubulin, alpha 1b##DQ400107|TUBA1B|10376|tubulin, alpha 1b##BC000696|TUBA1B|10376|tubulin, alpha 1b##BC071904|TUBA1B|10376|tubulin, alpha 1b##BC030820|TUBA1B|10376|tubulin, alpha 1b##AK026516|TUBA1B|10376|tubulin, alpha 1b##AK026632|TUBA1B|10376|tubulin, alpha 1b##AK057773|TUBA1B|10376|tubulin, alpha 1b##AK094717|TUBA1B|10376|tubulin, alpha 1b##AK098357|TUBA1B|10376|tubulin, alpha 1b##AK098635|TUBA1B|10376|tubulin, alpha 1b##AK098771|TUBA1B|10376|tubulin, alpha 1b##AK289354|TUBA1B|10376|tubulin, alpha 1b##BC015883|TUBA1B|10376|tubulin, alpha 1b##BC017004|TUBA1B|10376|tubulin, alpha 1b##BC008659|TUBA1B|10376|tubulin, alpha 1b##K00558|TUBA1B|10376|tubulin, alpha 1b##AK289483|TUBA1A|7846|tubulin, alpha 1a##BC006468|TUBA1A|7846|tubulin, alpha 1a##BC050637|TUBA1A|7846|tubulin, alpha 1a##AF141347|TUBA1A|7846|tubulin, alpha 1a##AK057842|TUBA1A|7846|tubulin, alpha 1a##AK297775|TUBA1A|7846|tubulin, alpha 1a##BC057823|TUBA1A|7846|tubulin, alpha 1a##NM_006009|TUBA1A|7846|tubulin, alpha 1a##AK298838|TUBA1A|7846|tubulin, alpha 1a##D28390|TUBA1C|84790|tubulin, alpha 1c##AK223024|TUBA1C|84790|tubulin, alpha 1c##BC005946|TUBA1C|84790|tubulin, alpha 1c##NM_032704|TUBA1C|84790|tubulin, alpha 1c	1.802728	0.0	denovo_WM_7:2:0.769	denovo_WM_7:-76:0.704
chr14	23288547	23288727	reg1004153.p1	8.206	+	AB020532 BX161519 NM_001126105	-3579	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	-4005	-	TSC_hg19_v1_chr14_-_23284568 AK025377	-4058	-	Y18474 BX248291 AF092032 AJ130718 NM_001126106	328	-	TSC_hg19_v1_chr14_+_23299095 AK096946 NM_178336 NM_180982 NM_181304 NM_181305 NM_181306 NM_181307	10454	+	TSC_hg19_v1_chr14_+_23299104 AK292011 AK000450 BX248749 BC055381 BC068070	10473	+	AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##Y18474|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX248291|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AF092032|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AJ130718|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126106|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK096946|MRPL52|122704|mitochondrial ribosomal protein L52##NM_178336|MRPL52|122704|mitochondrial ribosomal protein L52##NM_180982|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181304|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181305|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181306|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181307|MRPL52|122704|mitochondrial ribosomal protein L52##AK292011|MRPL52|122704|mitochondrial ribosomal protein L52##AK000450|MRPL52|122704|mitochondrial ribosomal protein L52##BX248749|MRPL52|122704|mitochondrial ribosomal protein L52##BC055381|MRPL52|122704|mitochondrial ribosomal protein L52##BC068070|MRPL52|122704|mitochondrial ribosomal protein L52	1.340989	0.0	denovo_WM_7:-8:0.298	denovo_WM_7:-9:0.298	denovo_WM_7:9:0.328	denovo_WM_7:-10:0.298
chr3	121722583	121722711	reg1002415.p1	8.206	+	NM_001145998 NM_021082 AK289820 AK296895 AK302002 AK304189 BC020743 BC044572 BC038445 S78203	-109415	+	AF217516 NM_018456 TSC_hg19_v1_chr3_+_121554083 BC014589 AY049020 BC014209 AF517829 AK301560 AB528527 CU676923 DQ892648 DQ895887	-168567	+	TSC_hg19_v1_chr3_-_121553908 AB062481 AY714228 NM_001023570 NM_001023571	-168720	-	AY672837 AY672839 BC044240 AY134857 TSC_hg19_v1_chr3_-_121741095 AK129974 NM_001199799 NM_001199800 NM_175924	18400	-	NM_001206924 NM_001206925 NM_175862 AK294663 AK301237 AK316203 BC040261 L25259 AK291497 AK313103	51607	+	NM_006889 NM_176892 U04343	74075	+	NM_001145998|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##NM_021082|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK289820|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK296895|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK302002|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK304189|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC020743|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC044572|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC038445|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##S78203|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AF217516|EAF2|55840|ELL associated factor 2##NM_018456|EAF2|55840|ELL associated factor 2##BC014589|EAF2|55840|ELL associated factor 2##AY049020|EAF2|55840|ELL associated factor 2##BC014209|EAF2|55840|ELL associated factor 2##AF517829|EAF2|55840|ELL associated factor 2##AK301560|EAF2|55840|ELL associated factor 2##DQ892648|EAF2|55840|ELL associated factor 2##DQ895887|EAF2|55840|ELL associated factor 2##AB062481|IQCB1|9657|IQ motif containing B1##AY714228|IQCB1|9657|IQ motif containing B1##NM_001023570|IQCB1|9657|IQ motif containing B1##NM_001023571|IQCB1|9657|IQ motif containing B1##AY672837|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY672839|ILDR1|286676|immunoglobulin-like domain containing receptor 1##BC044240|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY134857|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AK129974|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199799|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199800|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_175924|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001206924|CD86|942|CD86 molecule##NM_001206925|CD86|942|CD86 molecule##NM_175862|CD86|942|CD86 molecule##AK294663|CD86|942|CD86 molecule##AK301237|CD86|942|CD86 molecule##AK316203|CD86|942|CD86 molecule##BC040261|CD86|942|CD86 molecule##L25259|CD86|942|CD86 molecule##AK291497|CD86|942|CD86 molecule##AK313103|CD86|942|CD86 molecule##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule	0.967217	0.0	denovo_WM_7:-8:0.305	denovo_WM_7:-9:0.200	denovo_WM_7:-11:0.351
chr11	58869751	58869898	reg1003743.p1	8.205	+	AK091965 AX747281 DQ084381 NM_001220496 NM_080661 AK055818	-159072	+	NM_001220494 AK300479 BC008353	-174687	+	BC021682 NM_145016 BC016789	-257836	-	TSC_hg19_v1_chr11_+_58874641 BC062456 NM_001142703 NM_001142704 NM_198947 BC005998 AK304258 AY457926 AK303520	4838	+	TSC_hg19_v1_chr11_-_58910222 AK124475 BC028022	40419	-	TSC_hg19_v1_chr11_+_58910331 AK092237 AX747422 NM_001142519 NM_001142520 NM_001142521	40486	+	AK091965|GLYATL1|92292|glycine-N-acyltransferase-like 1##DQ084381|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220496|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_080661|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK055818|GLYATL1|92292|glycine-N-acyltransferase-like 1##NM_001220494|GLYATL1|92292|glycine-N-acyltransferase-like 1##AK300479|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC008353|GLYATL1|92292|glycine-N-acyltransferase-like 1##BC021682|GLYATL2|219970|glycine-N-acyltransferase-like 2##NM_145016|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC016789|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC062456|FAM111B|374393|family with sequence similarity 111, member B##NM_001142703|FAM111B|374393|family with sequence similarity 111, member B##NM_001142704|FAM111B|374393|family with sequence similarity 111, member B##NM_198947|FAM111B|374393|family with sequence similarity 111, member B##BC005998|FAM111B|374393|family with sequence similarity 111, member B##AK304258|FAM111B|374393|family with sequence similarity 111, member B##AY457926|FAM111B|374393|family with sequence similarity 111, member B##AK303520|FAM111B|374393|family with sequence similarity 111, member B##AK092237|FAM111A|63901|family with sequence similarity 111, member A##NM_001142519|FAM111A|63901|family with sequence similarity 111, member A##NM_001142520|FAM111A|63901|family with sequence similarity 111, member A##NM_001142521|FAM111A|63901|family with sequence similarity 111, member A	0.0	0.0	
chr12	76353829	76353982	reg1005070.p1	8.205	+	BC005225 TSC_hg19_v1_chr12_-_75905414 NM_007043	-448486	-	BC033887 TSC_hg19_v1_chr12_-_75905393 BC014034 BC026107	-448510	-	AK022133 TSC_hg19_v1_chr12_-_75905382 BC016778 U55766	-448520	-	AF220656 TSC_hg19_v1_chr12_-_76424608	70642	-	TSC_hg19_v1_chr12_-_76425369 BC126425 BC130427 BC110820 U92983 BC018929	71385	-	TSC_hg19_v1_chr12_-_76425376 AK304224 AB587598 NM_007350 Z50194	71622	-	BC005225|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##NM_007043|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC033887|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC014034|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC026107|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AK022133|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC016778|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##U55766|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AF220656|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC126425|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC130427|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC110820|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##U92983|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC018929|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##AK304224|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##NM_007350|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##Z50194|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1	0.0	0.0	
chr8	37773867	37773999	reg1002553.p1	8.205	+	AY280968 DQ083995 AF368294 DQ236342 BC077720 BC054881 TSC_hg19_v1_chr8_-_37757016 AK291781 AK026275 NM_001002814 NM_025151	-16932	-	TSC_hg19_v1_chr8_-_37727937 AK026177	-45983	-	NM_018310 TSC_hg19_v1_chr8_-_37707430 AK294337	-66489	-	BC029504 NM_152413	23713	-	S53291 TSC_hg19_v1_chr8_-_37822825	48886	-	AY487247 FJ170286 FJ170287 BC075017 AK313857 X70811 AK309919 AK293033 NM_000025	50151	-	AY280968|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ083995|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AF368294|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ236342|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC077720|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC054881|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK291781|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK026275|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_001002814|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_025151|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK026177|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_018310|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK294337|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##BC029504|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##NM_152413|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##S53291|ADRB3|155|adrenergic, beta-3-, receptor##AY487247|ADRB3|155|adrenergic, beta-3-, receptor##FJ170286|ADRB3|155|adrenergic, beta-3-, receptor##FJ170287|ADRB3|155|adrenergic, beta-3-, receptor##BC075017|ADRB3|155|adrenergic, beta-3-, receptor##AK313857|ADRB3|155|adrenergic, beta-3-, receptor##X70811|ADRB3|155|adrenergic, beta-3-, receptor##AK309919|ADRB3|155|adrenergic, beta-3-, receptor##AK293033|ADRB3|155|adrenergic, beta-3-, receptor##NM_000025|ADRB3|155|adrenergic, beta-3-, receptor	0.0	0.033138	
chr2	162427095	162427188	reg1003148.p1	8.204	+	AK057394 TSC_hg19_v1_chr2_-_162364248	-62888	-	TSC_hg19_v1_chr2_+_162272908 U49250 AB529217 HQ258587	-154235	+	TSC_hg19_v1_chr2_+_162272830 AK297438 AK312567 AK226050 BC029289	-154320	+	NM_001178015 NM_001178016 NM_022058 BC051190 AK294767 AK308529 AK309839 BC038298 AK293793 AB040457 BC136269 BC143714 AY376402	53795	+	AY429533 TSC_hg19_v1_chr2_-_162929965 AY429531 AY429532 BC013329 AB451339 AB451488 AB590646 M80536	502821	-	M74777 TSC_hg19_v1_chr2_-_162930507	503362	-	AK057394|AHCTF1P1|285116|AT hook containing transcription factor 1 pseudogene 1##U49250|TBR1|10716|T-box, brain, 1##HQ258587|TBR1|10716|T-box, brain, 1##AK297438|TBR1|10716|T-box, brain, 1##AK312567|TBR1|10716|T-box, brain, 1##AK226050|TBR1|10716|T-box, brain, 1##BC029289|TBR1|10716|T-box, brain, 1##NM_001178015|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##NM_001178016|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##NM_022058|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##BC051190|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AK294767|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AK308529|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AK309839|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##BC038298|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AK293793|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AB040457|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##BC136269|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##BC143714|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AY376402|SLC4A10|57282|solute carrier family 4, sodium bicarbonate transporter, member 10##AY429533|DPP4|1803|dipeptidyl-peptidase 4##AY429531|DPP4|1803|dipeptidyl-peptidase 4##AY429532|DPP4|1803|dipeptidyl-peptidase 4##BC013329|DPP4|1803|dipeptidyl-peptidase 4##AB451339|DPP4|1803|dipeptidyl-peptidase 4##AB451488|DPP4|1803|dipeptidyl-peptidase 4##M80536|DPP4|1803|dipeptidyl-peptidase 4##M74777|DPP4|1803|dipeptidyl-peptidase 4	0.998517	0.0	
chr8	131329286	131329414	reg1003651.p1	8.204	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-300467	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-300656	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-300691	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	126681	-	NM_001115	723484	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1587007	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.999382	0.0	denovo_WM_7:-8:0.739
chr1	65673130	65673303	reg1003524.p1	8.203	+	TSC_hg19_v1_chr1_+_65613971 BC040224 BC136886 BC136887 BC148270 CR456830 CU688216 DQ892294 DQ895494	-59186	+	TSC_hg19_v1_chr1_+_65613835 NM_013410 AK025926 AK313611 X60673	-59368	+	TSC_hg19_v1_chr1_+_65613263 NM_203464 BC146653 BC016180 AK309057 BC066944 NM_001005353	-59855	+	TSC_hg19_v1_chr1_+_65720144 AK123450 BC051722	46903	+	AK296408 NM_014787 AB007942	57213	+	BC140007 NM_001198683 NM_017526 TSC_hg19_v1_chr1_+_65886266	212986	+	BC040224|AK4|205|adenylate kinase 4##BC136886|AK4|205|adenylate kinase 4##BC136887|AK4|205|adenylate kinase 4##BC148270|AK4|205|adenylate kinase 4##CR456830|AK4|205|adenylate kinase 4##DQ892294|AK4|205|adenylate kinase 4##DQ895494|AK4|205|adenylate kinase 4##NM_013410|AK4|205|adenylate kinase 4##AK025926|AK4|205|adenylate kinase 4##AK313611|AK4|205|adenylate kinase 4##X60673|AK4|205|adenylate kinase 4##NM_203464|AK4|205|adenylate kinase 4##BC146653|AK4|205|adenylate kinase 4##BC016180|AK4|205|adenylate kinase 4##AK309057|AK4|205|adenylate kinase 4##BC066944|AK4|205|adenylate kinase 4##NM_001005353|AK4|205|adenylate kinase 4##AK123450|LOC645195|645195|uncharacterized LOC645195##BC051722|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##AK296408|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##NM_014787|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##AB007942|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##BC140007|LEPROT|54741|leptin receptor overlapping transcript##NM_001198683|LEPROT|54741|leptin receptor overlapping transcript##NM_017526|LEPROT|54741|leptin receptor overlapping transcript	0.983794	0.0	denovo_WM_7:26:0.475	denovo_WM_7:27:0.475
chr8	109508954	109509096	reg1003166.p1	8.203	+	TSC_hg19_v1_chr8_+_109455874 AK290974 D14659 AB384437 CR457402 CU676696 CU692380 HQ447150	-53145	+	TSC_hg19_v1_chr8_+_109455865 BC021667 NM_014673 AK222615 BC007027 BC020753	-53173	+	TSC_hg19_v1_chr8_-_109260947 BC017887 AK313186 BC005944 BC016706 BC021679 U94175 U62962 BC008419 NM_001568 AK310902	-248040	-	AK055230 NM_153015 BC033057 BC030710	290781	-	BC105045 BC113360 NM_003301 X72089 D16845 AY493373 HQ258206 X75071	590671	+	AF283302 AK311583 AF521133 NM_001128211 AK307663	833109	-	AK290974|TTC35|9694|tetratricopeptide repeat domain 35##D14659|TTC35|9694|tetratricopeptide repeat domain 35##CR457402|TTC35|9694|tetratricopeptide repeat domain 35##HQ447150|TTC35|9694|tetratricopeptide repeat domain 35##BC021667|TTC35|9694|tetratricopeptide repeat domain 35##NM_014673|TTC35|9694|tetratricopeptide repeat domain 35##AK222615|TTC35|9694|tetratricopeptide repeat domain 35##BC007027|TTC35|9694|tetratricopeptide repeat domain 35##BC020753|TTC35|9694|tetratricopeptide repeat domain 35##BC017887|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##AK313186|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC005944|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC016706|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC021679|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##U94175|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##U62962|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC008419|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##NM_001568|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##AK310902|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##AK055230|TMEM74|157753|transmembrane protein 74##NM_153015|TMEM74|157753|transmembrane protein 74##BC030710|TMEM74|157753|transmembrane protein 74##BC105045|TRHR|7201|thyrotropin-releasing hormone receptor##BC113360|TRHR|7201|thyrotropin-releasing hormone receptor##NM_003301|TRHR|7201|thyrotropin-releasing hormone receptor##X72089|TRHR|7201|thyrotropin-releasing hormone receptor##D16845|TRHR|7201|thyrotropin-releasing hormone receptor##AY493373|TRHR|7201|thyrotropin-releasing hormone receptor##HQ258206|TRHR|7201|thyrotropin-releasing hormone receptor##X75071|TRHR|7201|thyrotropin-releasing hormone receptor##AF283302|NUDCD1|84955|NudC domain containing 1##AK311583|NUDCD1|84955|NudC domain containing 1##AF521133|NUDCD1|84955|NudC domain containing 1##NM_001128211|NUDCD1|84955|NudC domain containing 1##AK307663|NUDCD1|84955|NudC domain containing 1	0.995076	0.0	denovo_WM_7:9:0.982
chr12	67018712	67018855	reg1003648.p1	8.202	+	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-322454	+	BC069388 AK298645 TSC_hg19_v1_chr12_+_66583064 AB590803 CU691242	-435730	+	TSC_hg19_v1_chr12_+_66583004 AF113136	-435773	+	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	53973	-	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	54119	-	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	644319	+	NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##BC069388|IRAK3|11213|interleukin-1 receptor-associated kinase 3##AK298645|IRAK3|11213|interleukin-1 receptor-associated kinase 3##AF113136|IRAK3|11213|interleukin-1 receptor-associated kinase 3##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1	0.988357	0.0	denovo_WM_7:4:0.812
chr18	3322992	3323110	reg1003081.p1	8.201	+	NM_001144944 NM_001144945	-60388	+	TSC_hg19_v1_chr18_+_3262184 BC004994	-60854	+	NM_033546 AY320408 TSC_hg19_v1_chr18_+_3262134 AK291726 U26162 D50372 D82058	-60906	+	NM_174886	89020	+	NM_173207 AK291112	124566	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	127029	+	NM_001144944|MYL12B|103910|myosin, light chain 12B, regulatory##NM_001144945|MYL12B|103910|myosin, light chain 12B, regulatory##BC004994|MYL12B|103910|myosin, light chain 12B, regulatory##NM_033546|MYL12B|103910|myosin, light chain 12B, regulatory##AY320408|MYL12B|103910|myosin, light chain 12B, regulatory##AK291726|MYL12B|103910|myosin, light chain 12B, regulatory##U26162|MYL12B|103910|myosin, light chain 12B, regulatory##D50372|MYL12B|103910|myosin, light chain 12B, regulatory##D82058|MYL12B|103910|myosin, light chain 12B, regulatory##NM_174886|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173207|TGIF1|7050|TGFB-induced factor homeobox 1##AK291112|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1	0.99723	0.864371	CTCF.p2:35:0.864
chr10	43637041	43637182	reg1002291.p1	8.199	+	TSC_hg19_v1_chr10_+_43633892 AB090811 BC030268 NM_018590 BX640967 AB079252 AK125300 AF086458	-3169	+	TSC_hg19_v1_chr10_+_43572516 NM_020630 NM_020975 BC003072 BC004257 X15262 AK291807 AB384817 CU678360 CU678648 Y12528	-64508	+	TSC_hg19_v1_chr10_+_43278248 AK308420 BC043345	-358861	+	BC022548 NM_145313	125255	-	BC054876 AY358584 NM_001184963 NM_173160	229979	+	TSC_hg19_v1_chr10_-_43892200 NM_001098208	255108	-	AB090811|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##BC030268|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##NM_018590|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##BX640967|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##AB079252|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##AK125300|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##AF086458|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##NM_020630|RET|5979|ret proto-oncogene##NM_020975|RET|5979|ret proto-oncogene##BC003072|RET|5979|ret proto-oncogene##BC004257|RET|5979|ret proto-oncogene##X15262|RET|5979|ret proto-oncogene##AK291807|RET|5979|ret proto-oncogene##Y12528|RET|5979|ret proto-oncogene##AK308420|BMS1|9790|BMS1 homolog, ribosome assembly protein (yeast)##BC043345|BMS1|9790|BMS1 homolog, ribosome assembly protein (yeast)##BC022548|RASGEF1A|221002|RasGEF domain family, member 1A##NM_145313|RASGEF1A|221002|RasGEF domain family, member 1A##BC054876|FXYD4|53828|FXYD domain containing ion transport regulator 4##AY358584|FXYD4|53828|FXYD domain containing ion transport regulator 4##NM_001184963|FXYD4|53828|FXYD domain containing ion transport regulator 4##NM_173160|FXYD4|53828|FXYD domain containing ion transport regulator 4##NM_001098208|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F	1.980173	0.0	denovo_WM_7:-13:0.820	denovo_WM_7:-28:0.273	denovo_WM_7:-29:0.330	denovo_WM_7:-30:0.387
chr5	158526388	158526548	reg1000095.p1	8.199	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-11	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1240378	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1342088	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	274	-	AK304228 NM_001199382	108180	-	AK056513 NM_144726	108365	-	AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145	1.365524	0.0	denovo_WM_7:74:0.736
chr5	73194841	73194988	reg1003191.p1	8.199	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-85564	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-272929	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-333332	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	741549	-	AK096578 NM_003633	742334	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	786094	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	0.99598	0.0	denovo_WM_7:-28:0.736
chr9	99685052	99685177	reg1003930.p2	8.199	+	BC137073 AK131468 NM_001001662	-68728	-	AB023189 NM_014930 TSC_hg19_v1_chr9_-_99540352 BC036676 BC068587 BC058022 AK292600	-144761	-	TSC_hg19_v1_chr9_-_99417600 BC136501 BC136503 NM_153698	-267504	-	NM_001045477 NM_001170741	6171	+	TSC_hg19_v1_chr9_-_99775872 BC005058	90786	-	AF070448 BC023504 Y14734 AB001928 AK310645 AK310740 BC110512 AY358641 NM_001333	116364	-	BC137073|ZNF782|158431|zinc finger protein 782##AK131468|ZNF782|158431|zinc finger protein 782##NM_001001662|ZNF782|158431|zinc finger protein 782##AB023189|ZNF510|22869|zinc finger protein 510##NM_014930|ZNF510|22869|zinc finger protein 510##BC036676|ZNF510|22869|zinc finger protein 510##BC068587|ZNF510|22869|zinc finger protein 510##BC058022|ZNF510|22869|zinc finger protein 510##AK292600|ZNF510|22869|zinc finger protein 510##BC136501|C9orf21|195827|chromosome 9 open reading frame 21##BC136503|C9orf21|195827|chromosome 9 open reading frame 21##NM_153698|C9orf21|195827|chromosome 9 open reading frame 21##NM_001045477|FAM22G|441457|family with sequence similarity 22, member G##NM_001170741|FAM22G|441457|family with sequence similarity 22, member G##BC005058|HIATL2|84278|hippocampus abundant transcript-like 2##AF070448|CTSL2|1515|cathepsin L2##BC023504|CTSL2|1515|cathepsin L2##Y14734|CTSL2|1515|cathepsin L2##AB001928|CTSL2|1515|cathepsin L2##AK310645|CTSL2|1515|cathepsin L2##AK310740|CTSL2|1515|cathepsin L2##BC110512|CTSL2|1515|cathepsin L2##AY358641|CTSL2|1515|cathepsin L2##NM_001333|CTSL2|1515|cathepsin L2	0.997175	0.0	denovo_WM_7:-50:0.976
chr12	12878969	12879149	reg1000125.p3	8.198	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	-203	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-8933	+	AK096388 NM_006143	-29939	-	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	59518	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	87231	+	NM_003979	164896	+	NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_003979|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A	0.992929	0.0	
chr19	10870629	10870753	reg1003962.p1	8.197	+	TSC_hg19_v1_chr19_+_10828827 BC039596 AK289831	-41832	+	TSC_hg19_v1_chr19_+_10828773 L36983	-41919	+	TSC_hg19_v1_chr19_+_10828765 BC054501	-41924	+	AB528501 DQ892640 DQ895878 BC002443 BC018831 TSC_hg19_v1_chr19_-_10946889 U41804 NM_006858	76233	-	BC157863 NM_001136482	88414	+	TSC_hg19_v1_chr19_+_10982255 NM_199141	111559	+	BC039596|DNM2|1785|dynamin 2##AK289831|DNM2|1785|dynamin 2##L36983|DNM2|1785|dynamin 2##BC054501|DNM2|1785|dynamin 2##DQ892640|TMED1|11018|transmembrane emp24 protein transport domain containing 1##DQ895878|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC002443|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC018831|TMED1|11018|transmembrane emp24 protein transport domain containing 1##U41804|TMED1|11018|transmembrane emp24 protein transport domain containing 1##NM_006858|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC157863|C19orf38|255809|chromosome 19 open reading frame 38##NM_001136482|C19orf38|255809|chromosome 19 open reading frame 38##NM_199141|CARM1|10498|coactivator-associated arginine methyltransferase 1	0.981373	0.0	denovo_WM_7:28:0.331	denovo_WM_7:29:0.615
chr16	13130591	13130690	reg1003788.p2	8.196	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-135172	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-232921	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-232989	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	883391	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	1034446	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	1149878	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.943639	0.0	denovo_WM_7:-29:0.905
chr19	8258083	8258263	reg1001811.p1	8.195	+	AB384635 AB053450 BC153882 NM_032447	-45798	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-140226	+	AK292662 NM_001201359 NM_005624	-140528	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	16075	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	115036	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	128084	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	2.433237	0.0	denovo_WM_7:-14:0.923	denovo_WM_7:-73:0.332	denovo_WM_7:-89:0.819
chr8	32412353	32412471	reg1003282.p1	8.194	+	AK298132 NM_001160002 NM_001160004 NM_001160005 NM_001160007 NM_001160008 NM_004495 NM_013956 NM_013957 NM_013958 NM_013960 NM_013964 M94168 BC006492 TSC_hg19_v1_chr8_+_32405834 M94167 AF026146 AK097005 AK290730 L12261	-6623	+	NM_013962	-915145	+	TSC_hg19_v1_chr8_+_30891325 AF091214	-1521121	+	AK289927 NM_013959	91838	+	NM_001159996 AK293270 AK293240	166980	+	TSC_hg19_v1_chr8_+_32785485 BC034319	373077	+	AK298132|NRG1|3084|neuregulin 1##NM_001160002|NRG1|3084|neuregulin 1##NM_001160004|NRG1|3084|neuregulin 1##NM_001160005|NRG1|3084|neuregulin 1##NM_001160007|NRG1|3084|neuregulin 1##NM_001160008|NRG1|3084|neuregulin 1##NM_004495|NRG1|3084|neuregulin 1##NM_013956|NRG1|3084|neuregulin 1##NM_013957|NRG1|3084|neuregulin 1##NM_013958|NRG1|3084|neuregulin 1##NM_013960|NRG1|3084|neuregulin 1##NM_013964|NRG1|3084|neuregulin 1##M94168|NRG1|3084|neuregulin 1##BC006492|NRG1|3084|neuregulin 1##M94167|NRG1|3084|neuregulin 1##AF026146|NRG1|3084|neuregulin 1##AK097005|NRG1|3084|neuregulin 1##AK290730|NRG1|3084|neuregulin 1##L12261|NRG1|3084|neuregulin 1##NM_013962|NRG1|3084|neuregulin 1##AF091214|WRN|7486|Werner syndrome, RecQ helicase-like##AK289927|NRG1|3084|neuregulin 1##NM_013959|NRG1|3084|neuregulin 1##NM_001159996|NRG1|3084|neuregulin 1##AK293270|NRG1|3084|neuregulin 1##AK293240|NRG1|3084|neuregulin 1	0.919619	0.931384	CTCF.p2:-29:0.931	denovo_WM_7:39:0.398	denovo_WM_7:40:0.344
chrX	24072574	24072754	reg1000386.p2	8.194	+	AK057298 NM_030624	-27362	-	AK058173 NM_001169574 NM_152761 BC117344 BC117346 BC144007	-146498	+	TSC_hg19_v1_chrX_-_23926052 AY359114 AK311865 AF061264 BC016814 BC002333 BC010102 NM_024122	-146654	-	TSC_hg19_v1_chrX_+_24073062 BC019906 NM_001415	400	+	TSC_hg19_v1_chrX_+_24073072 AK222577 AK290397 AK312247 AB590041 CU676476 DQ891794 DQ894977 AB451230 AB451353 L19161	414	+	AB209892 NM_001178086 NM_001178095 X59738 TSC_hg19_v1_chrX_+_24167845 NM_001178084 NM_001178085 NM_003410	95128	+	AK057298|KLHL15|80311|kelch-like 15 (Drosophila)##NM_030624|KLHL15|80311|kelch-like 15 (Drosophila)##AK058173|CXorf58|254158|chromosome X open reading frame 58##NM_001169574|CXorf58|254158|chromosome X open reading frame 58##NM_152761|CXorf58|254158|chromosome X open reading frame 58##BC117344|CXorf58|254158|chromosome X open reading frame 58##BC117346|CXorf58|254158|chromosome X open reading frame 58##BC144007|CXorf58|254158|chromosome X open reading frame 58##AY359114|APOO|79135|apolipoprotein O##AK311865|APOO|79135|apolipoprotein O##AF061264|APOO|79135|apolipoprotein O##BC016814|APOO|79135|apolipoprotein O##BC002333|APOO|79135|apolipoprotein O##BC010102|APOO|79135|apolipoprotein O##NM_024122|APOO|79135|apolipoprotein O##BC019906|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##NM_001415|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK222577|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK290397|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK312247|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ891794|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ894977|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451230|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451353|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##L19161|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB209892|ZFX|7543|zinc finger protein, X-linked##NM_001178086|ZFX|7543|zinc finger protein, X-linked##NM_001178095|ZFX|7543|zinc finger protein, X-linked##X59738|ZFX|7543|zinc finger protein, X-linked##NM_001178084|ZFX|7543|zinc finger protein, X-linked##NM_001178085|ZFX|7543|zinc finger protein, X-linked##NM_003410|ZFX|7543|zinc finger protein, X-linked	0.99773	0.0	denovo_WM_7:-5:0.238	denovo_WM_7:-6:0.238	denovo_WM_7:-7:0.238	denovo_WM_7:-8:0.238
chr12	75339863	75339999	reg1003409.p1	8.192	+	AK054742 TSC_hg19_v1_chr12_+_74933681	-406311	+	TSC_hg19_v1_chr12_+_74931622 BC009111 AL713650	-408292	+	NM_001136262 TSC_hg19_v1_chr12_+_74931614 AK056642	-408346	+	AK309245 AB209994 AK294269 TSC_hg19_v1_chr12_-_75603243	263297	-	AK094720 NM_139136 NM_139137 NM_153748	263579	-	BC033860 AK091839 AX747212 NM_032606	383888	-	BC009111|ATXN7L3B|552889|ataxin 7-like 3B##AL713650|ATXN7L3B|552889|ataxin 7-like 3B##NM_001136262|ATXN7L3B|552889|ataxin 7-like 3B##AK056642|ATXN7L3B|552889|ataxin 7-like 3B##AK309245|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##AB209994|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##AK294269|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##AK094720|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_139136|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_139137|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_153748|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##BC033860|CAPS2|84698|calcyphosine 2##AK091839|CAPS2|84698|calcyphosine 2##NM_032606|CAPS2|84698|calcyphosine 2	0.998885	0.0	denovo_WM_7:0:0.287	denovo_WM_7:-2:0.411
chr17	66231212	66231369	reg1002996.p1	8.192	+	TSC_hg19_v1_chr17_+_66097706 BC045718	-133592	+	TSC_hg19_v1_chr17_+_66031889 BC034443	-199402	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	-199450	+	NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_016627 TSC_hg19_v1_chr17_+_66244216 BC056271 BC050709	12890	+	TSC_hg19_v1_chr17_+_66244233 AF208856	12953	+	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	24044	+	BC045718|LOC100499466|100499466|uncharacterized LOC100499466##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_001033569|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033570|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033571|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033572|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033574|AMZ2|51321|archaelysin family metallopeptidase 2##NM_016627|AMZ2|51321|archaelysin family metallopeptidase 2##BC056271|AMZ2|51321|archaelysin family metallopeptidase 2##BC050709|AMZ2|51321|archaelysin family metallopeptidase 2##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G	0.0	0.0	
chr19	16189599	16189747	reg1003820.p2	8.192	+	TSC_hg19_v1_chr19_+_16187330 X05276 BC002827 AK315076 AF310722 AF186109 BT019634	-2289	+	TSC_hg19_v1_chr19_+_16187306 BC067225	-2364	+	TSC_hg19_v1_chr19_+_16187304 BC037576 AK300136 AK307538 AK301285	-2388	+	TSC_hg19_v1_chr19_+_16222463 AK025165 NM_005370	32801	+	TSC_hg19_v1_chr19_+_16222683 BC002977	32943	+	AK293676 TSC_hg19_v1_chr19_+_16222706 X56741 AF498943 BT007184 CR536583 CR542274 DQ892523 DQ895735 AB209767	33049	+	X05276|TPM4|7171|tropomyosin 4##BC002827|TPM4|7171|tropomyosin 4##AK315076|TPM4|7171|tropomyosin 4##AF186109|TPM4|7171|tropomyosin 4##BT019634|TPM4|7171|tropomyosin 4##BC067225|TPM4|7171|tropomyosin 4##BC037576|TPM4|7171|tropomyosin 4##AK300136|TPM4|7171|tropomyosin 4##AK307538|TPM4|7171|tropomyosin 4##AK301285|TPM4|7171|tropomyosin 4##AK025165|RAB8A|4218|RAB8A, member RAS oncogene family##NM_005370|RAB8A|4218|RAB8A, member RAS oncogene family##BC002977|RAB8A|4218|RAB8A, member RAS oncogene family##AK293676|RAB8A|4218|RAB8A, member RAS oncogene family##X56741|RAB8A|4218|RAB8A, member RAS oncogene family##AF498943|RAB8A|4218|RAB8A, member RAS oncogene family##BT007184|RAB8A|4218|RAB8A, member RAS oncogene family##CR536583|RAB8A|4218|RAB8A, member RAS oncogene family##CR542274|RAB8A|4218|RAB8A, member RAS oncogene family##DQ892523|RAB8A|4218|RAB8A, member RAS oncogene family##DQ895735|RAB8A|4218|RAB8A, member RAS oncogene family##AB209767|RAB8A|4218|RAB8A, member RAS oncogene family	0.997531	0.0	
chr14	103066044	103066199	reg1004029.p1	8.191	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-6960	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-7123	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-90007	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	177698	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	177779	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	322877	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.98828	0.0	denovo_WM_7:29:0.834
chr2	145320049	145320194	reg1002883.p2	8.191	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-42200	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	-42490	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-44918	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	3281996	+	TSC_hg19_v1_chr2_+_148602300 AK314124	3282214	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	3282524	+	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA	0.996754	0.0	
chr13	41267038	41267195	reg1002657.p1	8.189	+	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	-26404	-	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-1037255	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-1089754	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	78176	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	78216	-	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	96473	+	BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15	1.00508	0.0	denovo_WM_7:-19:0.491	denovo_WM_7:-20:0.286	denovo_WM_7:-21:0.214
chr10	74042474	74042646	reg1003850.p1	8.188	+	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	-8736	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-66449	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-66772	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	72118	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	72366	-	AK298347 AK296086 TSC_hg19_v1_chr10_-_74283734 NM_001195519	241159	-	NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK298347|MICU1|10367|mitochondrial calcium uptake 1##AK296086|MICU1|10367|mitochondrial calcium uptake 1##NM_001195519|MICU1|10367|mitochondrial calcium uptake 1	0.9946	0.0	
chr17	29058243	29058405	reg1002918.p1	8.188	+	BC096718 BC098126 BC098273 NM_015594	-171741	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-253891	+	AK316409 NM_001199775 AK302878	-350809	+	TSC_hg19_v1_chr17_+_29058664 BC047718	364	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	93351	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	93439	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	1.32853	0.0	denovo_WM_7:-97:0.308
chr6	37349383	37349511	reg1004778.p1	8.188	+	TSC_hg19_v1_chr6_+_37321829 AB014546 AK222765 AK298319 AK022075 AK308840 AF334675 BT007446 CU675685 DQ890737 DQ893909	-27566	+	TSC_hg19_v1_chr6_+_37321801 BC007517	-27639	+	TSC_hg19_v1_chr6_+_37321758 NM_003958 NM_183078	-27689	+	TSC_hg19_v1_chr6_+_37400996 NM_015050 BC031890 D43949	51499	+	TSC_hg19_v1_chr6_+_37401050 AK292564	51608	+	AB385274 TSC_hg19_v1_chr6_+_37403469	53990	+	AB014546|RNF8|9025|ring finger protein 8##AK222765|RNF8|9025|ring finger protein 8##AK298319|RNF8|9025|ring finger protein 8##AK022075|RNF8|9025|ring finger protein 8##AK308840|RNF8|9025|ring finger protein 8##AF334675|RNF8|9025|ring finger protein 8##BT007446|RNF8|9025|ring finger protein 8##DQ890737|RNF8|9025|ring finger protein 8##DQ893909|RNF8|9025|ring finger protein 8##BC007517|RNF8|9025|ring finger protein 8##NM_003958|RNF8|9025|ring finger protein 8##NM_183078|RNF8|9025|ring finger protein 8##NM_015050|FTSJD2|23070|FtsJ methyltransferase domain containing 2##BC031890|FTSJD2|23070|FtsJ methyltransferase domain containing 2##D43949|FTSJD2|23070|FtsJ methyltransferase domain containing 2##AK292564|FTSJD2|23070|FtsJ methyltransferase domain containing 2	0.0	0.312879	CTCF.p2:-1:0.313
chr18	13568982	13569162	reg1003127.p1	8.187	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-350287	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-577727	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-621008	+	NM_001003674 NM_001003675	42592	+	AF009426 AF009427 NM_004338 NM_181483	51794	+	TSC_hg19_v1_chr18_-_13726549 AK055618	157434	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.015428	0.0	
chr4	48946836	48946970	reg1003344.p1	8.187	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	-38124	-	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	-113652	+	TSC_hg19_v1_chr4_-_48782286 BC040987 BC050336 NM_015030	-164605	-	AK025164 NM_025087 BC137387 BC137388	41369	+	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	3762383	+	CR749811 NM_001024611	3936882	-	CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1##BC040987|FRYL|285527|FRY-like##BC050336|FRYL|285527|FRY-like##NM_015030|FRYL|285527|FRY-like##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66	0.995916	0.927918	CTCF.p2:-33:0.928
chr19	28957154	28957253	reg1002829.p2	8.185	+	TSC_hg19_v1_chr19_+_28284946 AK095009	-672275	+	TSC_hg19_v1_chr19_-_28284831 AK311452	-672370	-	TSC_hg19_v1_chr19_+_28284377 BC024732	-672815	+	TSC_hg19_v1_chr19_-_29704059 DQ891841 BC000649 BC067832 BC010035 BC021057 AK291134	746857	-	TSC_hg19_v1_chr19_-_29704107 NM_006003	746918	-	NM_001146339	1060287	+	AK311452|LOC148189|148189|uncharacterized LOC148189##DQ891841|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC000649|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC067832|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC010035|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##AK291134|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_006003|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_001146339|VSTM2B|342865|V-set and transmembrane domain containing 2B	0.985582	0.85774	CTCF.p2:11:0.858	denovo_WM_7:-32:0.437	denovo_WM_7:-33:0.526
chr6	71999221	71999396	reg1002810.p2	8.185	+	TSC_hg19_v1_chr6_+_71998514 BC110999	-784	+	TSC_hg19_v1_chr6_+_71998513 BC018688	-798	+	NM_024576 TSC_hg19_v1_chr6_+_71998479	-822	+	AK023251 TSC_hg19_v1_chr6_-_72130545	131192	-	AB045726 AB051866 TSC_hg19_v1_chr6_+_72596447	597120	+	BC151853 AB002338 BC152435 NM_014989 TSC_hg19_v1_chr6_+_72596658	597345	+	BC110999|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##AK023251|LINC00472|79940|long intergenic non-protein coding RNA 472##AB045726|RIMS1|22999|regulating synaptic membrane exocytosis 1##AB051866|RIMS1|22999|regulating synaptic membrane exocytosis 1##BC151853|RIMS1|22999|regulating synaptic membrane exocytosis 1##AB002338|RIMS1|22999|regulating synaptic membrane exocytosis 1##BC152435|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_014989|RIMS1|22999|regulating synaptic membrane exocytosis 1	1.996472	0.0	denovo_WM_7:-31:0.469	denovo_WM_7:-32:0.321	denovo_WM_7:-47:0.299	denovo_WM_7:-48:0.447
chr14	21852212	21852378	reg1002769.p1	8.184	+	BC000565 BC014046 TSC_hg19_v1_chr14_-_21852177 BC021561 BC111402	-126	-	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	-173	-	AJ417067 NM_020366	-96160	+	AK024072 NM_007192	129	-	NM_001170629	47571	-	CR749315 TSC_hg19_v1_chr14_-_21905405 AK122910 NM_020920	53133	-	BC000565|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC014046|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC111402|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##AK024072|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##NM_007192|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##NM_001170629|CHD8|57680|chromodomain helicase DNA binding protein 8##CR749315|CHD8|57680|chromodomain helicase DNA binding protein 8##AK122910|CHD8|57680|chromodomain helicase DNA binding protein 8##NM_020920|CHD8|57680|chromodomain helicase DNA binding protein 8	1.648923	0.0	denovo_WM_7:-25:0.674	denovo_WM_7:-46:0.644
chr9	45804667	45804779	reg1003923.p2	8.184	+	TSC_hg19_v1_chr9_+_45441926 BC006438	-362797	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-2119880	+	NM_001145196	-2173994	-	BC040528 NM_001113541 NM_015667	19704886	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	20652578	+	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	20653773	-	BC006438|LOC100132167|100132167|uncharacterized LOC100132167##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.999494	0.0	
chr14	67844769	67844917	reg1003301.p1	8.183	+	AB587562 DQ892151 DQ895347 TSC_hg19_v1_chr14_+_67831578	-13312	+	TSC_hg19_v1_chr14_+_67827105 J02645	-17726	+	TSC_hg19_v1_chr14_+_67827077 BC002513	-17763	+	BC008056 AB528314 DQ891238 DQ894423 TSC_hg19_v1_chr14_-_67878843 AF228603 NM_016445	33968	-	TSC_hg19_v1_chr14_-_67878872 BC001226	34028	-	NM_182526 TSC_hg19_v1_chr14_-_67982162 AK090706 AX746582	137267	-	DQ892151|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##DQ895347|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##J02645|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BC002513|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BC008056|PLEK2|26499|pleckstrin 2##DQ891238|PLEK2|26499|pleckstrin 2##DQ894423|PLEK2|26499|pleckstrin 2##AF228603|PLEK2|26499|pleckstrin 2##NM_016445|PLEK2|26499|pleckstrin 2##BC001226|PLEK2|26499|pleckstrin 2##NM_182526|TMEM229B|161145|transmembrane protein 229B##AK090706|TMEM229B|161145|transmembrane protein 229B	0.999408	0.0	denovo_WM_7:6:0.739
chr8	22857065	22857187	reg1003118.p2	8.180	+	TSC_hg19_v1_chr8_+_22857067 AB018260 NM_015178	-49	+	NM_001160037	-3766	+	AK092617 BC034917 NM_001160036	-12203	+	AK314366 AK098744 TSC_hg19_v1_chr8_+_22857390	246	+	TSC_hg19_v1_chr8_+_22857415 AK292863 AY009093	311	+	AB451272 AB451399 AF012628 AF018657 AF018658 AF020501 AF022386 CR541898 AB385139 TSC_hg19_v1_chr8_-_22926429	69293	-	AB018260|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_015178|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160037|RHOBTB2|23221|Rho-related BTB domain containing 2##BC034917|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160036|RHOBTB2|23221|Rho-related BTB domain containing 2##AK314366|RHOBTB2|23221|Rho-related BTB domain containing 2##AK098744|RHOBTB2|23221|Rho-related BTB domain containing 2##AK292863|RHOBTB2|23221|Rho-related BTB domain containing 2##AY009093|RHOBTB2|23221|Rho-related BTB domain containing 2##AB451272|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AB451399|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF012628|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF018657|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF018658|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF020501|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF022386|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##CR541898|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b	0.977273	0.0	denovo_WM_7:12:0.977
chr12	118780714	118780829	reg1003697.p2	8.179	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-206793	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-206848	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-206896	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	29857	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	29959	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	33631	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	1.345069	0.0	denovo_WM_7:74:0.349
chr4	39761810	39761931	reg1003900.p1	8.179	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-62066	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-121314	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-232244	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	217468	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	217723	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	296662	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	1.980613	0.0	denovo_WM_7:-46:0.875	denovo_WM_7:-64:0.491	denovo_WM_7:-65:0.491
chr7	128146982	128147119	reg1003955.p1	8.178	+	NM_018396 TSC_hg19_v1_chr7_+_128116813 AK302775 BC107586 AK002212 BC064929 BC121115 BC121116 AK299960	-30213	+	TSC_hg19_v1_chr7_+_128095931 NM_001098786 NM_013332 AF144755 AK024729 AK222583 BC008573 BC001863 BC093742 BC112183	-51084	+	TSC_hg19_v1_chr7_-_128050037 AK092452 BC033622 AK054667 AK122994 NM_000883 NM_001102605 NM_001142576 NM_183243	-97013	-	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	165296	+	TSC_hg19_v1_chr7_+_128349114 AK093161 AK302221 AX747964 BC040906 AK310426	202077	+	BC032842 AF367470 NM_032599 AK313608 AK310308 BC037248	208391	+	NM_018396|METTL2B|55798|methyltransferase like 2B##AK302775|METTL2B|55798|methyltransferase like 2B##BC107586|METTL2B|55798|methyltransferase like 2B##AK002212|METTL2B|55798|methyltransferase like 2B##BC064929|METTL2B|55798|methyltransferase like 2B##BC121115|METTL2B|55798|methyltransferase like 2B##BC121116|METTL2B|55798|methyltransferase like 2B##AK299960|METTL2B|55798|methyltransferase like 2B##NM_001098786|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_013332|HILPDA|29923|hypoxia inducible lipid droplet-associated##AF144755|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK024729|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK222583|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC008573|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC001863|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC093742|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC112183|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK092452|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC033622|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054667|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK122994|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_000883|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001102605|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142576|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_183243|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2##AK093161|FAM71F1|84691|family with sequence similarity 71, member F1##AK302221|FAM71F1|84691|family with sequence similarity 71, member F1##BC040906|FAM71F1|84691|family with sequence similarity 71, member F1##AK310426|FAM71F1|84691|family with sequence similarity 71, member F1##BC032842|FAM71F1|84691|family with sequence similarity 71, member F1##AF367470|FAM71F1|84691|family with sequence similarity 71, member F1##NM_032599|FAM71F1|84691|family with sequence similarity 71, member F1##AK313608|FAM71F1|84691|family with sequence similarity 71, member F1##AK310308|FAM71F1|84691|family with sequence similarity 71, member F1##BC037248|FAM71F1|84691|family with sequence similarity 71, member F1	0.993534	0.0	
chr1	193039576	193039737	reg1000759.p2	8.176	+	BC036658 AY205314 AY205315 M25077 TSC_hg19_v1_chr1_+_193029273	-10432	+	NM_001042369 NM_001042370 NM_001173525 NM_004600	-10653	+	TSC_hg19_v1_chr1_+_193028764 AK314594 S57803	-10960	+	AF151891 BC028113 TSC_hg19_v1_chr1_-_193074545 AF132495 BC009669 AY038988 NM_197962	34894	-	NM_001243399 AF290514 NM_016066	35558	-	TSC_hg19_v1_chr1_+_193091115 NM_024529	51432	+	BC036658|TROVE2|6738|TROVE domain family, member 2##AY205314|TROVE2|6738|TROVE domain family, member 2##AY205315|TROVE2|6738|TROVE domain family, member 2##M25077|TROVE2|6738|TROVE domain family, member 2##NM_001042369|TROVE2|6738|TROVE domain family, member 2##NM_001042370|TROVE2|6738|TROVE domain family, member 2##NM_001173525|TROVE2|6738|TROVE domain family, member 2##NM_004600|TROVE2|6738|TROVE domain family, member 2##AK314594|TROVE2|6738|TROVE domain family, member 2##S57803|TROVE2|6738|TROVE domain family, member 2##AF151891|GLRX2|51022|glutaredoxin 2##BC028113|GLRX2|51022|glutaredoxin 2##AF132495|GLRX2|51022|glutaredoxin 2##BC009669|GLRX2|51022|glutaredoxin 2##AY038988|GLRX2|51022|glutaredoxin 2##NM_197962|GLRX2|51022|glutaredoxin 2##NM_001243399|GLRX2|51022|glutaredoxin 2##AF290514|GLRX2|51022|glutaredoxin 2##NM_016066|GLRX2|51022|glutaredoxin 2##NM_024529|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	1.139017	0.0	denovo_WM_7:10:0.841
chr14	78065202	78065341	reg1003642.p2	8.175	+	BX248771 BX248277 BX248770 AK056709 AK291600 AK300214 BC101019 BC101020 BC101021 BC101022 CR749863 AJ583024 AK075445 NM_182509 NM_199296	-100117	-	TSC_hg19_v1_chr14_+_77924438 BC000321 AK313824 AF164791	-140829	+	TSC_hg19_v1_chr14_+_77924412 NM_012111 AK300766 AJ243310	-140881	+	CU675001 DQ893297 DQ896786 TSC_hg19_v1_chr14_-_78082949	17664	-	Y08686 TSC_hg19_v1_chr14_-_78082981 BC005123	17723	-	AB011098 NM_004863 TSC_hg19_v1_chr14_-_78083124	17855	-	BX248771|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248277|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248770|ISM2|145501|isthmin 2 homolog (zebrafish)##AK056709|ISM2|145501|isthmin 2 homolog (zebrafish)##AK291600|ISM2|145501|isthmin 2 homolog (zebrafish)##AK300214|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101019|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101020|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101021|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101022|ISM2|145501|isthmin 2 homolog (zebrafish)##CR749863|ISM2|145501|isthmin 2 homolog (zebrafish)##AJ583024|ISM2|145501|isthmin 2 homolog (zebrafish)##AK075445|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_182509|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_199296|ISM2|145501|isthmin 2 homolog (zebrafish)##BC000321|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK313824|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AF164791|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##NM_012111|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK300766|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AJ243310|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##DQ893297|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##DQ896786|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##Y08686|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##BC005123|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##AB011098|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##NM_004863|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2	0.999218	0.0	denovo_WM_7:0:0.783
chr9	117147800	117147904	reg1003078.p1	8.175	+	BC042202 TSC_hg19_v1_chr9_-_117111294	-36563	-	NM_000608 AK312226 BC015964 BC056239 AK303760 CR456930 CU677539	-55726	+	NM_000607 X02544 AK316207 AK312035 BC026238 BC007032 BC104818 BC104820 BC143313 BC143314 M13692 AB463987 BT019790 CU693168	-62495	+	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	2438	-	AY703040 BC055285 NM_030767	8832	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	12899	-	BC042202|AKNA|80709|AT-hook transcription factor##NM_000608|ORM2|5005|orosomucoid 2##AK312226|ORM2|5005|orosomucoid 2##BC015964|ORM2|5005|orosomucoid 2##BC056239|ORM2|5005|orosomucoid 2##AK303760|ORM2|5005|orosomucoid 2##CR456930|ORM2|5005|orosomucoid 2##NM_000607|ORM1|5004|orosomucoid 1##X02544|ORM1|5004|orosomucoid 1##AK316207|ORM1|5004|orosomucoid 1##AK312035|ORM1|5004|orosomucoid 1##BC026238|ORM1|5004|orosomucoid 1##BC007032|ORM1|5004|orosomucoid 1##BC104818|ORM1|5004|orosomucoid 1##BC104820|ORM1|5004|orosomucoid 1##BC143313|ORM1|5004|orosomucoid 1##BC143314|ORM1|5004|orosomucoid 1##M13692|ORM1|5004|orosomucoid 1##BT019790|ORM1|5004|orosomucoid 1##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor	0.0	0.0	
chr11	75537649	75537812	reg1003401.p1	8.174	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-11452	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-11508	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-57807	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	379782	-	TSC_hg19_v1_chr11_-_75921806 AK075540	384074	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	554278	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.993257	0.0	
chr1	32447128	32447246	reg1003143.p2	8.174	+	TSC_hg19_v1_chr1_-_32403992 NM_080391	-43190	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	-43256	-	NM_001195100 NM_001195101	-61929	-	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	32311	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	91317	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	91387	+	NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B	0.99483	0.0	denovo_WM_7:17:0.332	denovo_WM_7:18:0.332	denovo_WM_7:19:0.332
chr4	71740630	71740766	reg1003305.p1	8.174	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-35061	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-35121	-	AK094806 NM_001098477	-35495	-	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	27415	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	118609	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	118773	+	NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase	0.202598	0.0	
chr5	180532784	180532888	reg1003194.p1	8.174	+	AK298113 TSC_hg19_v1_chr5_+_180467271 BC062459	-65521	+	NM_152547 TSC_hg19_v1_chr5_+_180467233 AK057097 AY358358	-65599	+	NM_197975 AK025267 AY358385 BC100800 BC100801 BC100802	-116935	+	NM_206880	49106	+	AF396655 NM_203297	95093	-	AF396652 AF396653 NM_203294 NM_203295 NM_203296	98503	-	AK298113|BTNL9|153579|butyrophilin-like 9##BC062459|BTNL9|153579|butyrophilin-like 9##NM_152547|BTNL9|153579|butyrophilin-like 9##AK057097|BTNL9|153579|butyrophilin-like 9##AY358358|BTNL9|153579|butyrophilin-like 9##NM_197975|BTNL3|10917|butyrophilin-like 3##AK025267|BTNL3|10917|butyrophilin-like 3##AY358385|BTNL3|10917|butyrophilin-like 3##BC100800|BTNL3|10917|butyrophilin-like 3##BC100801|BTNL3|10917|butyrophilin-like 3##BC100802|BTNL3|10917|butyrophilin-like 3##NM_206880|OR2V2|285659|olfactory receptor, family 2, subfamily V, member 2##AF396655|TRIM7|81786|tripartite motif containing 7##NM_203297|TRIM7|81786|tripartite motif containing 7##AF396652|TRIM7|81786|tripartite motif containing 7##AF396653|TRIM7|81786|tripartite motif containing 7##NM_203294|TRIM7|81786|tripartite motif containing 7##NM_203295|TRIM7|81786|tripartite motif containing 7##NM_203296|TRIM7|81786|tripartite motif containing 7	0.99029	0.0	denovo_WM_7:24:0.835
chr2	82567972	82568099	reg1003833.p2	8.173	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-2036192	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-2036310	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-2036510	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	2118335	-	AK296741 TSC_hg19_v1_chr2_-_84686396	2118360	-	NM_003849	2118550	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.114866	0.0	
chr6	11382552	11382706	reg1003827.p1	8.173	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-89	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-149719	-	L43821 TSC_hg19_v1_chr6_-_11232900	-149729	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	155869	+	NM_001143948 NM_032744	396650	-	NM_002114	630094	+	BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##L43821|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1	0.715887	0.0	denovo_WM_7:20:0.665
chr6	181412	181571	reg1003658.p1	8.173	+	None	None	None	None	None	None	None	None	None	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	110594	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	111006	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	210273	+	AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4	0.398052	0.0	denovo_WM_7:23:0.369
chr9	6759229	6759375	reg1002795.p2	8.173	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	-1263	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	-1635	+	AK310439 NM_001146696	-38440	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1040413	-	TSC_hg19_v1_chr9_+_8713275 AY779046	1953990	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	1974617	-	AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123##AY779046|RPL18A|6142|ribosomal protein L18a##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D	0.0	0.0	
chr1	169885069	169885249	reg1002742.p2	8.171	+	TSC_hg19_v1_chr1_-_169863059 NM_020423 NM_181093	-22097	-	AL117233 TSC_hg19_v1_chr1_-_169863038 BC014662 AK292507	-22146	-	AL354614 NM_018186	-120610	+	AK122897 NM_001204517	152896	-	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	158584	-	BC157860 BC171858 NM_001136107	230028	+	NM_020423|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##NM_181093|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL117233|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##BC014662|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AK292507|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL354614|C1orf112|55732|chromosome 1 open reading frame 112##NM_018186|C1orf112|55732|chromosome 1 open reading frame 112##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B	0.0	0.0	
chr20	25033634	25033774	reg1002798.p1	8.169	+	AK125058 AK296306 NM_001252676	-20380	-	TSC_hg19_v1_chr20_-_24973410 NM_020531 AK301959	-60217	-	TSC_hg19_v1_chr20_-_24973366 AB033767 AK291129	-60323	-	AL832939 BC114612 AK314440 TSC_hg19_v1_chr20_-_25038780 BC044588 BC055008 AK127566 BC039261 NM_001252675 NM_001252677 NM_032501	4975	-	BC126228 BC136497 AF251033 AF251034 DQ854807 DQ854808 DQ854809 DQ854810 DQ854811 DQ854812 NM_014588 NM_199425	29057	-	TSC_hg19_v1_chr20_+_25176363 AK308626 NM_001114089 NM_001247 AK303786 CR936750 AK293256 AK128412 AK300028 AF039916 AK300514 CR936765 AL834158 BC025980 AY327581	142666	+	AK125058|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK296306|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252676|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_020531|C20orf3|57136|chromosome 20 open reading frame 3##AK301959|C20orf3|57136|chromosome 20 open reading frame 3##AB033767|C20orf3|57136|chromosome 20 open reading frame 3##AK291129|C20orf3|57136|chromosome 20 open reading frame 3##AL832939|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC114612|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK314440|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC044588|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC055008|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK127566|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC039261|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252675|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252677|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_032501|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC126228|VSX1|30813|visual system homeobox 1##BC136497|VSX1|30813|visual system homeobox 1##AF251033|VSX1|30813|visual system homeobox 1##AF251034|VSX1|30813|visual system homeobox 1##DQ854807|VSX1|30813|visual system homeobox 1##DQ854808|VSX1|30813|visual system homeobox 1##DQ854809|VSX1|30813|visual system homeobox 1##DQ854810|VSX1|30813|visual system homeobox 1##DQ854811|VSX1|30813|visual system homeobox 1##DQ854812|VSX1|30813|visual system homeobox 1##NM_014588|VSX1|30813|visual system homeobox 1##NM_199425|VSX1|30813|visual system homeobox 1##AK308626|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001114089|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001247|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK303786|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936750|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK293256|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK128412|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300028|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AF039916|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300514|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936765|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AL834158|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##BC025980|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AY327581|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)	0.999544	0.0	
chr22	29977217	29977351	reg1003493.p2	8.169	+	BC002371 BC006473 TSC_hg19_v1_chr22_-_29977083 AK290953 AK098367 AK298816 NM_001202502 AK314407	-189	-	NM_001002878 NM_001002879 BC003615 TSC_hg19_v1_chr22_-_29949699 AK025385 AB023200 AK225752 NM_001002877 NM_003678	-27587	-	AK302660 NM_021076 TSC_hg19_v1_chr22_+_29876208 BC073969 AF203032	-101069	+	AJ001258 NM_003634	41	-	NM_000268 NM_016418 NM_181825 NM_181828 NM_181829 NM_181830 NM_181831 NM_181832 NM_181833 TSC_hg19_v1_chr22_+_29999554	22267	+	TSC_hg19_v1_chr22_+_29999565 AF369657 AF369658 AF369659 AF369660	22298	+	BC002371|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##BC006473|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK290953|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK098367|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK298816|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001202502|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##AK314407|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_001002878|THOC5|8563|THO complex 5##NM_001002879|THOC5|8563|THO complex 5##BC003615|THOC5|8563|THO complex 5##AK025385|THOC5|8563|THO complex 5##AB023200|THOC5|8563|THO complex 5##AK225752|THOC5|8563|THO complex 5##NM_001002877|THOC5|8563|THO complex 5##NM_003678|THOC5|8563|THO complex 5##AK302660|NEFH|4744|neurofilament, heavy polypeptide##NM_021076|NEFH|4744|neurofilament, heavy polypeptide##BC073969|NEFH|4744|neurofilament, heavy polypeptide##AF203032|NEFH|4744|neurofilament, heavy polypeptide##AJ001258|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_003634|NIPSNAP1|8508|nipsnap homolog 1 (C. elegans)##NM_000268|NF2|4771|neurofibromin 2 (merlin)##NM_016418|NF2|4771|neurofibromin 2 (merlin)##NM_181825|NF2|4771|neurofibromin 2 (merlin)##NM_181828|NF2|4771|neurofibromin 2 (merlin)##NM_181829|NF2|4771|neurofibromin 2 (merlin)##NM_181830|NF2|4771|neurofibromin 2 (merlin)##NM_181831|NF2|4771|neurofibromin 2 (merlin)##NM_181832|NF2|4771|neurofibromin 2 (merlin)##NM_181833|NF2|4771|neurofibromin 2 (merlin)##AF369657|NF2|4771|neurofibromin 2 (merlin)##AF369658|NF2|4771|neurofibromin 2 (merlin)##AF369659|NF2|4771|neurofibromin 2 (merlin)##AF369660|NF2|4771|neurofibromin 2 (merlin)	0.995547	0.0	
chr10	24671645	24671825	reg1003261.p3	8.167	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-173641	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-173947	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-688058	+	TSC_hg19_v1_chr10_+_24755441 AK300422	83709	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	83734	+	AK307604 TSC_hg19_v1_chr10_-_25012174	340438	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	1.19435	0.0	
chr10	50398793	50398931	reg1003578.p2	8.167	+	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	-2436	-	BC029839 BC047597 NM_001164484	-56804	-	TSC_hg19_v1_chr10_-_50323537 BC041414 AK297931 AK056299 NM_001031746 NM_144984	-75339	-	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	108349	+	NM_001080520	201044	-	BC028954 AK074682 BC063690 NM_170753	333388	-	DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##BC041414|VSTM4|196740|V-set and transmembrane domain containing 4##AK297931|VSTM4|196740|V-set and transmembrane domain containing 4##AK056299|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001031746|VSTM4|196740|V-set and transmembrane domain containing 4##NM_144984|VSTM4|196740|V-set and transmembrane domain containing 4##AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##NM_001080520|DRGX|644168|dorsal root ganglia homeobox##BC028954|PGBD3|267004|piggyBac transposable element derived 3##AK074682|PGBD3|267004|piggyBac transposable element derived 3##BC063690|PGBD3|267004|piggyBac transposable element derived 3##NM_170753|PGBD3|267004|piggyBac transposable element derived 3	0.990242	0.0	denovo_WM_7:-41:0.237	denovo_WM_7:-42:0.237	denovo_WM_7:-43:0.237	denovo_WM_7:-44:0.237
chr3	113455476	113455575	reg1002703.p1	8.166	+	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	-40113	-	NM_017699	-204308	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-221532	-	AK296456 TSC_hg19_v1_chr3_-_113464788	9189	-	TSC_hg19_v1_chr3_-_113465043 CR749314 AK023090 AK307184 BC012731 AK311403 AK023256	9518	-	TSC_hg19_v1_chr3_-_113465109 NM_025146	9608	-	BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##CR749314|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023090|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK307184|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##BC012731|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023256|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##NM_025146|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.0	0.1192	
chr7	97762659	97762832	reg1003023.p1	8.166	+	TSC_hg19_v1_chr7_+_97736173 AB029002 BC146773 NM_014916 BC131504 AB384558 AB590084 AY130988	-26409	+	TSC_hg19_v1_chr7_-_97619350 AB528806 NM_006188	-143363	-	TSC_hg19_v1_chr7_-_97601657 BC030024	-161085	-	BC113394 BC113396 NM_177455 AB464465	78846	+	TSC_hg19_v1_chr7_-_97881512 AK292996 BC053591 NM_015395 AK057048	118754	-	NM_001159491 NM_015379 TSC_hg19_v1_chr7_+_97910997 AB055977 BC018737 AF041430 BC062370 BC071992	148254	+	AB029002|LMTK2|22853|lemur tyrosine kinase 2##BC146773|LMTK2|22853|lemur tyrosine kinase 2##NM_014916|LMTK2|22853|lemur tyrosine kinase 2##BC131504|LMTK2|22853|lemur tyrosine kinase 2##AY130988|LMTK2|22853|lemur tyrosine kinase 2##NM_006188|OCM2|4951|oncomodulin 2##BC113394|BHLHA15|168620|basic helix-loop-helix family, member a15##BC113396|BHLHA15|168620|basic helix-loop-helix family, member a15##NM_177455|BHLHA15|168620|basic helix-loop-helix family, member a15##AK292996|TECPR1|25851|tectonin beta-propeller repeat containing 1##BC053591|TECPR1|25851|tectonin beta-propeller repeat containing 1##NM_015395|TECPR1|25851|tectonin beta-propeller repeat containing 1##AK057048|TECPR1|25851|tectonin beta-propeller repeat containing 1##NM_001159491|BRI3|25798|brain protein I3##NM_015379|BRI3|25798|brain protein I3##AB055977|BRI3|25798|brain protein I3##BC018737|BRI3|25798|brain protein I3##AF041430|BRI3|25798|brain protein I3##BC062370|BRI3|25798|brain protein I3	0.32838	0.0	denovo_WM_7:59:0.201
chr17	76149788	76149968	reg1001682.p2	8.165	+	AY358510 NM_001163075	-7445	+	BC023597 NM_007267 TSC_hg19_v1_chr17_-_76128499	-21378	-	TSC_hg19_v1_chr17_+_76126871 AK310623 NM_152468 AK303499 BC110296 AY099358 AY099359 BC028076 AK090478	-23012	+	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	14782	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	33301	-	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	33545	+	AY358510|C17orf99|100141515|chromosome 17 open reading frame 99##NM_001163075|C17orf99|100141515|chromosome 17 open reading frame 99##BC023597|TMC6|11322|transmembrane channel-like 6##NM_007267|TMC6|11322|transmembrane channel-like 6##AK310623|TMC8|147138|transmembrane channel-like 8##NM_152468|TMC8|147138|transmembrane channel-like 8##AK303499|TMC8|147138|transmembrane channel-like 8##BC110296|TMC8|147138|transmembrane channel-like 8##AY099358|TMC8|147138|transmembrane channel-like 8##AY099359|TMC8|147138|transmembrane channel-like 8##BC028076|TMC8|147138|transmembrane channel-like 8##AK090478|TMC8|147138|transmembrane channel-like 8##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase	0.59531	0.0	denovo_WM_7:105:0.478
chr20	49156474	49156588	reg1003550.p2	8.164	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	-29526	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-29599	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-29612	+	AK056792 NM_080829	96894	-	TSC_hg19_v1_chr20_-_49308074 AK124347	151546	-	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	191538	+	BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)	0.265987	0.0	denovo_WM_7:-101:0.210
chr9	37785682	37785795	reg1003787.p2	8.164	+	AF281132 NM_016042 TSC_hg19_v1_chr9_-_37785068 NM_001002269	-669	-	BC002437 TSC_hg19_v1_chr9_-_37785062 AK290864 AK289571	-681	-	AF151860 CU679169 DQ891938 DQ895125 BC008880 TSC_hg19_v1_chr9_-_37785045 AB528623	-709	-	TSC_hg19_v1_chr9_+_37800784 NM_024345	15046	+	TSC_hg19_v1_chr9_+_37800815 BC108686	15070	+	AK091407 AX746962 TSC_hg19_v1_chr9_-_37904125 BC008500 BC063563	118391	-	AF281132|EXOSC3|51010|exosome component 3##NM_016042|EXOSC3|51010|exosome component 3##NM_001002269|EXOSC3|51010|exosome component 3##BC002437|EXOSC3|51010|exosome component 3##AK290864|EXOSC3|51010|exosome component 3##AK289571|EXOSC3|51010|exosome component 3##AF151860|EXOSC3|51010|exosome component 3##DQ891938|EXOSC3|51010|exosome component 3##DQ895125|EXOSC3|51010|exosome component 3##BC008880|EXOSC3|51010|exosome component 3##NM_024345|DCAF10|79269|DDB1 and CUL4 associated factor 10##BC108686|DCAF10|79269|DDB1 and CUL4 associated factor 10##AK091407|MCART1|92014|mitochondrial carrier triple repeat 1##BC008500|MCART1|92014|mitochondrial carrier triple repeat 1##BC063563|MCART1|92014|mitochondrial carrier triple repeat 1	0.99566	0.0	denovo_WM_7:-31:0.456	denovo_WM_7:-32:0.456
chr6	16305791	16305918	reg1002749.p2	8.163	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-67003	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-162544	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-176417	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	455843	-	NM_001190766	796634	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	976000	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr9	114798572	114798752	reg1003654.p2	8.162	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-139195	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-139548	+	AL833535 NM_173521	-252887	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	138858	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	296625	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	297187	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	1.005958	0.0	denovo_WM_7:23:0.331	denovo_WM_7:24:0.331	denovo_WM_7:25:0.331
chr7	45061689	45061869	reg1003410.p2	8.157	+	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	-21925	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-35539	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-43082	-	NM_001029835 AK298671 AK303216 AK303534	5472	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	66720	-	BC017235 BC014918 AK022575 AK222943 TSC_hg19_v1_chr7_-_45151294	89504	-	AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing##BC017235|TBRG4|9238|transforming growth factor beta regulator 4##BC014918|TBRG4|9238|transforming growth factor beta regulator 4##AK022575|TBRG4|9238|transforming growth factor beta regulator 4##AK222943|TBRG4|9238|transforming growth factor beta regulator 4	0.010368	0.0	
chr18	46496922	46497022	reg1003260.p1	8.156	+	AF010193 NM_001190821 NM_005904	-19892	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-20205	-	AK301535 NM_001190822	-21270	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	490079	-	TSC_hg19_v1_chr18_-_47013575 AB097012	516593	-	TSC_hg19_v1_chr18_-_47013599 BC093004	516627	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	1.938512	0.0	denovo_WM_7:-37:0.847	denovo_WM_7:-55:0.445	denovo_WM_7:-56:0.457
chr18	62076900	62077027	reg1004341.p1	8.154	+	NM_001031848 NM_002640 NM_198833 AK300391 L40377 TSC_hg19_v1_chr18_+_61637345 BC034528 U92984 BX571754 AK313782	-439650	+	NM_001123366	-460376	+	BC096217 BC096218 BC096219 BC096220 NM_005024 U35459	-494219	+	AJ007611 NM_033646	1340524	+	TSC_hg19_v1_chr18_+_63417845 BC036786	1340903	+	AB035301 NM_004361 TSC_hg19_v1_chr18_+_63418247	1341239	+	NM_001031848|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_002640|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_198833|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK300391|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##L40377|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BC034528|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##U92984|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BX571754|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK313782|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_001123366|HMSD|284293|histocompatibility (minor) serpin domain containing##BC096217|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096218|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096219|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096220|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_005024|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##U35459|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##AJ007611|CDH7|1005|cadherin 7, type 2##NM_033646|CDH7|1005|cadherin 7, type 2##BC036786|CDH7|1005|cadherin 7, type 2##AB035301|CDH7|1005|cadherin 7, type 2##NM_004361|CDH7|1005|cadherin 7, type 2	0.992948	0.888822	CTCF.p2:-9:0.889	denovo_WM_7:33:0.314	denovo_WM_7:34:0.314	denovo_WM_7:35:0.314
chr22	40979132	40979297	reg1003527.p2	8.153	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-119784	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-212559	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-212573	+	TSC_hg19_v1_chr22_-_41032681 AF368061	53439	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	53490	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	96007	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	0.0	0.0	
chr6	43737859	43737985	reg1003943.p2	8.152	+	TSC_hg19_v1_chr6_-_43655539 NM_001193343 NM_018135	-82374	-	TSC_hg19_v1_chr6_-_43655521 CU679679 DQ884400 AK300757 BC010364 AK307183 AB049952	-82403	-	NM_001193341 NM_152732 AK291399 BC029519 AK055407	-125126	+	TSC_hg19_v1_chr6_+_43737947 NM_001025366 NM_001025367 NM_001025368 NM_001025369 NM_001025370 NM_001033756 NM_001171622 NM_001171623 NM_001171624 NM_001171625 NM_001171626 NM_001171627 NM_001171628 NM_001171629 NM_001171630 NM_001204384 NM_001204385 NM_003376 BC058855 BC019867	96	+	TSC_hg19_v1_chr6_+_43738284 AF022375	325	+	TSC_hg19_v1_chr6_+_43738511 BC011177 BC065522	612	+	NM_001193343|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_018135|MRPS18A|55168|mitochondrial ribosomal protein S18A##DQ884400|MRPS18A|55168|mitochondrial ribosomal protein S18A##AK300757|MRPS18A|55168|mitochondrial ribosomal protein S18A##BC010364|MRPS18A|55168|mitochondrial ribosomal protein S18A##AK307183|MRPS18A|55168|mitochondrial ribosomal protein S18A##AB049952|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_001193341|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##NM_152732|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##AK291399|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##BC029519|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##AK055407|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##NM_001025366|VEGFA|7422|vascular endothelial growth factor A##NM_001025367|VEGFA|7422|vascular endothelial growth factor A##NM_001025368|VEGFA|7422|vascular endothelial growth factor A##NM_001025369|VEGFA|7422|vascular endothelial growth factor A##NM_001025370|VEGFA|7422|vascular endothelial growth factor A##NM_001033756|VEGFA|7422|vascular endothelial growth factor A##NM_001171622|VEGFA|7422|vascular endothelial growth factor A##NM_001171623|VEGFA|7422|vascular endothelial growth factor A##NM_001171624|VEGFA|7422|vascular endothelial growth factor A##NM_001171625|VEGFA|7422|vascular endothelial growth factor A##NM_001171626|VEGFA|7422|vascular endothelial growth factor A##NM_001171627|VEGFA|7422|vascular endothelial growth factor A##NM_001171628|VEGFA|7422|vascular endothelial growth factor A##NM_001171629|VEGFA|7422|vascular endothelial growth factor A##NM_001171630|VEGFA|7422|vascular endothelial growth factor A##NM_001204384|VEGFA|7422|vascular endothelial growth factor A##NM_001204385|VEGFA|7422|vascular endothelial growth factor A##NM_003376|VEGFA|7422|vascular endothelial growth factor A##BC058855|VEGFA|7422|vascular endothelial growth factor A##BC019867|VEGFA|7422|vascular endothelial growth factor A##AF022375|VEGFA|7422|vascular endothelial growth factor A##BC011177|VEGFA|7422|vascular endothelial growth factor A##BC065522|VEGFA|7422|vascular endothelial growth factor A	0.0	0.0	
chr5	76939794	76939974	reg1003944.p1	8.151	+	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-5370	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-5455	-	TSC_hg19_v1_chr5_-_76788333 AK001766 BC001807 NM_018268	-151569	-	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	132248	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	650541	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	650593	-	BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##AK001766|WDR41|55255|WD repeat domain 41##BC001807|WDR41|55255|WD repeat domain 41##NM_018268|WDR41|55255|WD repeat domain 41##BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.9921	0.0	
chr6	1397961	1398084	reg1004008.p2	8.150	+	NM_001452 U13220 AB463646	-7897	+	BC053850 NM_033260	-85348	+	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	-704932	-	BC134421 NM_001453	212658	+	TSC_hg19_v1_chr6_+_1611545 BC169307	213552	+	AF040260 NM_001253846	778202	-	NM_001452|FOXF2|2295|forkhead box F2##U13220|FOXF2|2295|forkhead box F2##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##BC134421|FOXC1|2296|forkhead box C1##NM_001453|FOXC1|2296|forkhead box C1##BC169307|FOXC1|2296|forkhead box C1##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase	0.995815	0.0	denovo_WM_7:28:0.456	denovo_WM_7:29:0.456
chr10	64977011	64977138	reg1003532.p1	8.149	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	-83928	+	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	-84043	+	AK312813 NM_001136178	-398148	-	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	51841	-	TSC_hg19_v1_chr10_+_65224979 BC007866 AK314171	247910	+	AK027280 EF068222 NM_032776 TSC_hg19_v1_chr10_-_65225738	248604	-	AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C##BC007866|LOC84989|84989|uncharacterized LOC84989##AK314171|LOC84989|84989|uncharacterized LOC84989##AK027280|JMJD1C|221037|jumonji domain containing 1C##EF068222|JMJD1C|221037|jumonji domain containing 1C##NM_032776|JMJD1C|221037|jumonji domain containing 1C	0.0681	0.208561	CTCF.p2:-38:0.209
chr2	88915440	88915620	reg1003568.p1	8.147	+	AK058098 NM_152670 BC029522	-91346	+	NM_001135649	-163478	-	NM_018271 BC050699 BC035315 AK001778	-442774	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	11448	-	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	75685	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	149871	+	AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##NM_001135649|FOXI3|344167|forkhead box I3##NM_018271|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC050699|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC035315|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK001778|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.020399	0.0	
chr6	107085687	107085814	reg1003617.p1	8.147	+	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	-8253	+	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	-8470	-	TSC_hg19_v1_chr6_+_106960443 U83115	-125339	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	263722	+	BC131628 NM_001080450	349885	-	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	694980	-	NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##U83115|AIM1|202|absent in melanoma 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2	0.114343	0.0	
chr1	28495768	28495922	reg1004502.p1	8.146	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-80721	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-209327	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-234284	+	NM_000952 NM_001164723	7609	-	S52624 AK292053 NM_001164721 NM_001164722	24567	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	63686	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.999772	0.0	denovo_WM_7:-29:0.457	denovo_WM_7:-30:0.457
chr19	38806896	38807076	reg1003220.p1	8.144	+	TSC_hg19_v1_chr19_-_38806576 BC007644 CU677151 BC014974 AL833382 BC091477 AK304479 NM_001039672 NM_001039673 NM_001145463	-409	-	TSC_hg19_v1_chr19_-_38806421 NM_001039671 NM_001145461 NM_001145462	-538	-	AY358965 NM_033557 AF258578	-6451	-	TSC_hg19_v1_chr19_+_38810504 AF117708 NM_004823 AK222545 AK315653 AF281302	3502	+	TSC_hg19_v1_chr19_+_38810523 EU978937	3540	+	TSC_hg19_v1_chr19_+_38810572 BC004367 DQ893422 DQ896740 CU678688	3580	+	BC007644|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##BC014974|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##AL833382|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##BC091477|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##AK304479|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_001039672|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_001039673|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_001145463|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_001039671|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_001145461|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_001145462|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##AY358965|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##NM_033557|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##AF258578|YIF1B|90522|Yip1 interacting factor homolog B (S. cerevisiae)##AF117708|KCNK6|9424|potassium channel, subfamily K, member 6##NM_004823|KCNK6|9424|potassium channel, subfamily K, member 6##AK222545|KCNK6|9424|potassium channel, subfamily K, member 6##AK315653|KCNK6|9424|potassium channel, subfamily K, member 6##AF281302|KCNK6|9424|potassium channel, subfamily K, member 6##EU978937|KCNK6|9424|potassium channel, subfamily K, member 6##BC004367|KCNK6|9424|potassium channel, subfamily K, member 6##DQ893422|KCNK6|9424|potassium channel, subfamily K, member 6##DQ896740|KCNK6|9424|potassium channel, subfamily K, member 6	0.997761	0.0	denovo_WM_7:15:0.880
chr13	106774688	106774828	reg1003620.p2	8.143	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-656167	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	-656454	+	NM_000452 U10417	-3055563	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	412591	-	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	445727	-	NM_001080396	1744701	-	NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A	0.0	0.0	
chr20	3778861	3779030	reg1003731.p1	8.143	+	TSC_hg19_v1_chr20_+_3776956 S78187 Z68092 BC006395 M81934	-1940	+	AK092713 FR695900 FR695901 NM_004358 NM_021872 NM_021873 TSC_hg19_v1_chr20_+_3776429 BX647988 BC051711	-2512	+	TSC_hg19_v1_chr20_-_3767358 X05299 AB464478 AF002713 BC053847 NM_001810	-11810	-	TSC_hg19_v1_chr20_+_3801202 NM_001204446 NM_001204447 NM_018347 BC011985 AK002030 AK093332 BC043344	22253	+	TSC_hg19_v1_chr20_+_3827524 NM_001206491 NM_020746 AK296897 AB097003 AK123956 AK291785 BX649084 AK023799 AX775775 BC044952 AK130992	48551	+	AK021791 NM_024960 TSC_hg19_v1_chr20_+_3869569	90587	+	S78187|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##Z68092|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##BC006395|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##M81934|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##AK092713|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##FR695900|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##FR695901|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_004358|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_021872|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_021873|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##BX647988|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##BC051711|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##X05299|CENPB|1059|centromere protein B, 80kDa##AF002713|CENPB|1059|centromere protein B, 80kDa##BC053847|CENPB|1059|centromere protein B, 80kDa##NM_001810|CENPB|1059|centromere protein B, 80kDa##NM_001204446|C20orf29|55317|chromosome 20 open reading frame 29##NM_001204447|C20orf29|55317|chromosome 20 open reading frame 29##NM_018347|C20orf29|55317|chromosome 20 open reading frame 29##BC011985|C20orf29|55317|chromosome 20 open reading frame 29##AK002030|C20orf29|55317|chromosome 20 open reading frame 29##AK093332|C20orf29|55317|chromosome 20 open reading frame 29##BC043344|C20orf29|55317|chromosome 20 open reading frame 29##NM_001206491|MAVS|57506|mitochondrial antiviral signaling protein##NM_020746|MAVS|57506|mitochondrial antiviral signaling protein##AK296897|MAVS|57506|mitochondrial antiviral signaling protein##AB097003|MAVS|57506|mitochondrial antiviral signaling protein##AK123956|MAVS|57506|mitochondrial antiviral signaling protein##AK291785|MAVS|57506|mitochondrial antiviral signaling protein##BX649084|MAVS|57506|mitochondrial antiviral signaling protein##AK023799|MAVS|57506|mitochondrial antiviral signaling protein##BC044952|MAVS|57506|mitochondrial antiviral signaling protein##AK130992|MAVS|57506|mitochondrial antiviral signaling protein##AK021791|PANK2|80025|pantothenate kinase 2##NM_024960|PANK2|80025|pantothenate kinase 2	0.986848	0.0	
chr5	130611931	130612111	reg1002071.p2	8.143	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-12221	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-12253	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-12265	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	358736	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	358798	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	358857	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.995543	0.0	denovo_WM_7:-37:0.492	denovo_WM_7:-38:0.492
chr11	102341092	102341244	reg1003670.p2	8.142	+	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	-17555	-	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-123140	+	TSC_hg19_v1_chr11_+_102217944 AK303197	-123239	+	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	60291	-	AB527354 NM_004771 Y12779	154887	-	AB527320 AF195192 AY358752 NM_022122	235287	-	DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20##AF195192|MMP27|64066|matrix metallopeptidase 27##AY358752|MMP27|64066|matrix metallopeptidase 27##NM_022122|MMP27|64066|matrix metallopeptidase 27	0.999132	0.0	denovo_WM_7:-37:0.964
chr2	7198405	7198538	reg1004519.p1	8.141	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-140884	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-180608	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-191768	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1623732	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1779248	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	1945350	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.999078	0.0	denovo_WM_7:5:0.235	denovo_WM_7:6:0.235	denovo_WM_7:7:0.235	denovo_WM_7:8:0.235
chrX	64943838	64943972	reg1002611.p2	8.137	+	TSC_hg19_v1_chrX_+_64887602 AK309986 M69066 AF295356 DQ892653 DQ895892	-56257	+	TSC_hg19_v1_chrX_+_64887542 BC001112 BC011827 BC017293	-56358	+	NM_002444 TSC_hg19_v1_chrX_+_64887520	-56388	+	TSC_hg19_v1_chrX_+_65235302 DQ680071 DQ680072	291386	+	DQ891770 DQ894953 BC010525 AJ132502 AK293215 AK298389 AK075153 AK297050 AK301417 AK075171 NM_001100431 NM_001184830 NM_001184831 NM_007268	315997	-	NM_138737 TSC_hg19_v1_chrX_+_65382512	438570	+	AK309986|MSN|4478|moesin##M69066|MSN|4478|moesin##DQ892653|MSN|4478|moesin##DQ895892|MSN|4478|moesin##BC001112|MSN|4478|moesin##BC011827|MSN|4478|moesin##BC017293|MSN|4478|moesin##NM_002444|MSN|4478|moesin##DQ891770|VSIG4|11326|V-set and immunoglobulin domain containing 4##DQ894953|VSIG4|11326|V-set and immunoglobulin domain containing 4##BC010525|VSIG4|11326|V-set and immunoglobulin domain containing 4##AJ132502|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK293215|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK298389|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075153|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK297050|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK301417|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075171|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001100431|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184830|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184831|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_007268|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_138737|HEPH|9843|hephaestin	0.98774	0.0	denovo_WM_7:1:0.965
chr15	52397092	52397236	reg1004134.p2	8.136	+	TSC_hg19_v1_chr15_+_52311442 BC035492	-85703	+	TSC_hg19_v1_chr15_+_52311432 CR749401	-85730	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	-85745	+	AF285092 AB587584 TSC_hg19_v1_chr15_-_52404936 BC093826 BC093828 BC143227 BC104442 BC104443 AF326964 NM_020396	7782	-	AB528747 AF501885 AM393025 TSC_hg19_v1_chr15_-_52472123 AL117471 BC011671 AK314775 BC013997 AF017656 NM_006578 AK290330	74977	-	TSC_hg19_v1_chr15_+_52472257 AF007131	75171	+	BC035492|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##AF285092|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093826|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093828|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104442|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104443|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF326964|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##NM_020396|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF501885|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AM393025|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AL117471|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC011671|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK314775|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC013997|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF017656|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##NM_006578|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK290330|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973	1.006462	0.0	denovo_WM_7:37:0.736
chr9	97431370	97431550	reg1004016.p1	8.136	+	TSC_hg19_v1_chr9_-_97402561 AK292199	-28898	-	NM_001127628 TSC_hg19_v1_chr9_-_97402546	-28922	-	TSC_hg19_v1_chr9_-_97401835 AK223395 AK316583 NM_000507	-29572	-	TSC_hg19_v1_chr9_+_97488980 NM_001193331 NM_032823 AK296782 AK057450	57502	+	BC029616 TSC_hg19_v1_chr9_+_97488999	57543	+	NM_001193329 AJ560639	90537	+	AK292199|FBP1|2203|fructose-1,6-bisphosphatase 1##NM_001127628|FBP1|2203|fructose-1,6-bisphosphatase 1##AK223395|FBP1|2203|fructose-1,6-bisphosphatase 1##AK316583|FBP1|2203|fructose-1,6-bisphosphatase 1##NM_000507|FBP1|2203|fructose-1,6-bisphosphatase 1##NM_001193331|C9orf3|84909|chromosome 9 open reading frame 3##NM_032823|C9orf3|84909|chromosome 9 open reading frame 3##AK296782|C9orf3|84909|chromosome 9 open reading frame 3##AK057450|C9orf3|84909|chromosome 9 open reading frame 3##BC029616|C9orf3|84909|chromosome 9 open reading frame 3##NM_001193329|C9orf3|84909|chromosome 9 open reading frame 3##AJ560639|C9orf3|84909|chromosome 9 open reading frame 3	0.997265	0.0	denovo_WM_7:60:0.644
chr8	42012498	42012646	reg1003778.p1	8.135	+	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	-2039	+	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	-103073	-	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-258262	-	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	52516	-	AK289387 AK290575 NM_000930 NM_033011 TSC_hg19_v1_chr8_-_42065195	52622	-	TSC_hg19_v1_chr8_+_42128819 NM_001190720 NM_001242778 NM_001556	116236	+	NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue##AK289387|PLAT|5327|plasminogen activator, tissue##AK290575|PLAT|5327|plasminogen activator, tissue##NM_000930|PLAT|5327|plasminogen activator, tissue##NM_033011|PLAT|5327|plasminogen activator, tissue##NM_001190720|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001242778|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001556|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	0.945003	0.0	denovo_WM_7:4:0.878
chr1	27192571	27192716	reg1003738.p1	8.134	+	BC023552 AF029082 NM_006142 TSC_hg19_v1_chr1_+_27189639 BC001550 BC000329 BC002995 BC000995 AB464718 M93010 DQ894162 CU674492 CR541905 CR541926	-2978	+	TSC_hg19_v1_chr1_+_27153178 BC066776 NM_032283	-39446	+	AK000484 AK225521 AK301626 NM_001202554 AK056539	-77962	+	CU675813 AY364261 TSC_hg19_v1_chr1_-_27216757 BC007815 BC008634 BC020272	24032	-	TSC_hg19_v1_chr1_-_27216775 AK022535 AY358864	24129	-	TSC_hg19_v1_chr1_-_27216794 AK001211 NM_018066	24183	-	BC023552|SFN|2810|stratifin##AF029082|SFN|2810|stratifin##NM_006142|SFN|2810|stratifin##BC001550|SFN|2810|stratifin##BC000329|SFN|2810|stratifin##BC002995|SFN|2810|stratifin##BC000995|SFN|2810|stratifin##M93010|SFN|2810|stratifin##DQ894162|SFN|2810|stratifin##CR541905|SFN|2810|stratifin##CR541926|SFN|2810|stratifin##BC066776|ZDHHC18|84243|zinc finger, DHHC-type containing 18##NM_032283|ZDHHC18|84243|zinc finger, DHHC-type containing 18##AK000484|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK225521|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK301626|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_001202554|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK056539|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AY364261|GPN2|54707|GPN-loop GTPase 2##BC007815|GPN2|54707|GPN-loop GTPase 2##BC008634|GPN2|54707|GPN-loop GTPase 2##BC020272|GPN2|54707|GPN-loop GTPase 2##AK022535|GPN2|54707|GPN-loop GTPase 2##AY358864|GPN2|54707|GPN-loop GTPase 2##AK001211|GPN2|54707|GPN-loop GTPase 2##NM_018066|GPN2|54707|GPN-loop GTPase 2	0.99941	0.0	denovo_WM_7:27:0.739
chr7	72847869	72847983	reg1002913.p1	8.134	+	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	-105634	+	AK057366 AY081948 AY081949 NM_178125	-105842	-	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	-125102	-	NM_003508 BC026333	184	+	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	88557	-	TSC_hg19_v1_chr7_-_72936538 AF084479	88623	-	NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##NM_003508|FZD9|8326|frizzled family receptor 9##BC026333|FZD9|8326|frizzled family receptor 9##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B	0.999644	0.0	
chr12	31470486	31470623	reg1003451.p2	8.133	+	BC047317 BC050522 X99583 AK303139 TSC_hg19_v1_chr12_+_31226840 U33833 U75967 BC001591	-243681	+	TSC_hg19_v1_chr12_+_31226805 U75968 BC011264	-243746	+	TSC_hg19_v1_chr12_+_31226789 BC148224 BC111733 NM_004399 NM_030653 NM_152438 AK297607 BC050069	-243776	+	TSC_hg19_v1_chr12_-_31477084 AK294457	6533	-	BC071966 TSC_hg19_v1_chr12_-_31479052 BC004462 AK027736 AF087885 AK026932 AL157432	8504	-	TSC_hg19_v1_chr12_-_31479085 AF212220	8547	-	BC047317|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC050522|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##X99583|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK303139|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##U33833|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##U75967|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC001591|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##U75968|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC011264|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC148224|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##NM_004399|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##NM_030653|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##NM_152438|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK297607|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC050069|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK294457|FAM60A|58516|family with sequence similarity 60, member A##BC071966|FAM60A|58516|family with sequence similarity 60, member A##BC004462|FAM60A|58516|family with sequence similarity 60, member A##AF087885|FAM60A|58516|family with sequence similarity 60, member A##AK026932|FAM60A|58516|family with sequence similarity 60, member A##AL157432|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A	0.917465	0.0	denovo_WM_7:0:0.333	denovo_WM_7:-1:0.378
chr16	2582948	2583128	reg1000653.p1	8.133	+	BC146925 BC146926 AY584596 NM_001048212	-1655	-	TSC_hg19_v1_chr16_+_2570406 NM_001145815 NM_015944 AF132948 AK296877 AK300747 BC018734 CU676298	-12648	+	TSC_hg19_v1_chr16_+_2564000 AB463422 BT007155 CR541930 CR541951	-18986	+	TSC_hg19_v1_chr16_+_2587985 NM_002613 NM_031268	4930	+	TSC_hg19_v1_chr16_+_2587992 AB209835	4955	+	TSC_hg19_v1_chr16_+_2588020 BC006339 BC012103	4972	+	BC146925|CEMP1|752014|cementum protein 1##BC146926|CEMP1|752014|cementum protein 1##AY584596|CEMP1|752014|cementum protein 1##NM_001048212|CEMP1|752014|cementum protein 1##NM_001145815|AMDHD2|51005|amidohydrolase domain containing 2##NM_015944|AMDHD2|51005|amidohydrolase domain containing 2##AF132948|AMDHD2|51005|amidohydrolase domain containing 2##AK296877|AMDHD2|51005|amidohydrolase domain containing 2##AK300747|AMDHD2|51005|amidohydrolase domain containing 2##BC018734|AMDHD2|51005|amidohydrolase domain containing 2##BT007155|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##CR541930|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##CR541951|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##NM_002613|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##NM_031268|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##AB209835|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC006339|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC012103|PDPK1|5170|3-phosphoinositide dependent protein kinase-1	0.0	0.0	
chr15	64722625	64722764	reg1003464.p1	8.132	+	NM_016213 TSC_hg19_v1_chr15_+_64680041 BC012448 AK314319 AB464298 EU446746	-42658	+	AF529370 AY598324 AB463081 CU675545 BC005832 D14657 BC007101 TSC_hg19_v1_chr15_-_64673641 AK290748 BC016782 NM_001029989 NM_014736	-49059	-	TSC_hg19_v1_chr15_-_64648373 AK225960 NM_022048	-74294	-	TSC_hg19_v1_chr15_+_64752786 BC142647	30165	+	NM_015042	68924	+	AB056456 TSC_hg19_v1_chr15_+_64885153	162459	+	NM_016213|TRIP4|9325|thyroid hormone receptor interactor 4##BC012448|TRIP4|9325|thyroid hormone receptor interactor 4##AK314319|TRIP4|9325|thyroid hormone receptor interactor 4##EU446746|TRIP4|9325|thyroid hormone receptor interactor 4##AF529370|KIAA0101|9768|KIAA0101##AY598324|KIAA0101|9768|KIAA0101##BC005832|KIAA0101|9768|KIAA0101##D14657|KIAA0101|9768|KIAA0101##BC007101|KIAA0101|9768|KIAA0101##AK290748|KIAA0101|9768|KIAA0101##BC016782|KIAA0101|9768|KIAA0101##NM_001029989|KIAA0101|9768|KIAA0101##NM_014736|KIAA0101|9768|KIAA0101##AK225960|CSNK1G1|53944|casein kinase 1, gamma 1##NM_022048|CSNK1G1|53944|casein kinase 1, gamma 1##BC142647|ZNF609|23060|zinc finger protein 609##NM_015042|ZNF609|23060|zinc finger protein 609	0.018044	0.0	
chr3	61654270	61654409	reg1003831.p1	8.132	+	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-106363	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-107053	+	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	-107128	+	AB055764 TSC_hg19_v1_chr3_-_61728812	74472	-	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	650367	+	BC017772 NM_020685	651056	+	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14	0.0	0.231212	CTCF.p2:46:0.231
chr14	73763117	73763256	reg1003146.p1	8.131	+	NM_173462 TSC_hg19_v1_chr14_+_73704238 BC042057 BC136623 BC144315	-58935	+	AJ008005 TSC_hg19_v1_chr14_+_73603214	-159974	+	TSC_hg19_v1_chr14_+_73603184 L42110	-160006	+	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	162046	-	TSC_hg19_v1_chr14_-_73925274 BX248781	162081	-	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	162105	-	NM_173462|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC042057|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC136623|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC144315|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##AJ008005|PSEN1|5663|presenilin 1##L42110|PSEN1|5663|presenilin 1##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)	0.997767	0.0	denovo_WM_7:-27:0.449	denovo_WM_7:-28:0.449
chr3	52744687	52744867	reg1004014.p2	8.131	+	TSC_hg19_v1_chr3_+_52740115 AF092138 AK027426 AX775781 AX775783 AX775833 L38852 AX775787 BC000884	-4651	+	TSC_hg19_v1_chr3_-_52740047 NM_001010983 NM_018446	-4741	-	NM_014041	-4921	+	AK294165 TSC_hg19_v1_chr3_-_52804957 BC015515 L20321 AK312420 BC063044 EF560744 NM_001193533 NM_003157	60156	-	NM_002215 AK298398 TSC_hg19_v1_chr3_+_52811614 BC069464 X63652 AK298423 BC109115 AK292750 AK314198	66839	+	X16260 NM_001166434 AK298455	67703	+	AF092138|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##AK027426|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##AX775783|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##AX775833|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##L38852|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##AX775787|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##BC000884|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##NM_001010983|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_018446|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_014041|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)##AK294165|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##BC015515|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##L20321|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##AK312420|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##BC063044|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##EF560744|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##NM_001193533|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##NM_003157|NEK4|6787|NIMA (never in mitosis gene a)-related kinase 4##NM_002215|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##AK298398|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##BC069464|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##X63652|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##AK298423|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##BC109115|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##AK292750|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##AK314198|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##X16260|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##NM_001166434|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1##AK298455|ITIH1|3697|inter-alpha-trypsin inhibitor heavy chain 1	0.0	0.0	
chr19	36391502	36391682	reg1003889.p1	8.130	+	TSC_hg19_v1_chr19_-_36391448 AF385434 NM_139239	-93	-	TSC_hg19_v1_chr19_+_36359436 NM_001024807 NM_005166 BC013850 AK092376 BC012889 AK312292 BC032983 U48437 AB527091 CU680434 DQ891341 DQ894523	-32128	+	BC007312 NM_032123 NM_199179 NM_199180 AY358742 AL136654 AB593116	-43765	+	AL050163 BC046348 NM_001007469 NM_014266 TSC_hg19_v1_chr19_+_36393430 BC065224 BC035931 AF072844 AF122904 AY359058 AF285447 AB590940	1845	+	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	7558	-	TSC_hg19_v1_chr19_-_36399198 AF019562 BC011175 AK290385	7600	-	AF385434|NFKBID|84807|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta##NM_139239|NFKBID|84807|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta##NM_001024807|APLP1|333|amyloid beta (A4) precursor-like protein 1##NM_005166|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC013850|APLP1|333|amyloid beta (A4) precursor-like protein 1##AK092376|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC012889|APLP1|333|amyloid beta (A4) precursor-like protein 1##AK312292|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC032983|APLP1|333|amyloid beta (A4) precursor-like protein 1##U48437|APLP1|333|amyloid beta (A4) precursor-like protein 1##DQ891341|APLP1|333|amyloid beta (A4) precursor-like protein 1##DQ894523|APLP1|333|amyloid beta (A4) precursor-like protein 1##BC007312|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_032123|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_199179|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##NM_199180|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AY358742|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AL136654|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AB593116|KIRREL2|84063|kin of IRRE like 2 (Drosophila)##AL050163|HCST|10870|hematopoietic cell signal transducer##BC046348|HCST|10870|hematopoietic cell signal transducer##NM_001007469|HCST|10870|hematopoietic cell signal transducer##NM_014266|HCST|10870|hematopoietic cell signal transducer##BC065224|HCST|10870|hematopoietic cell signal transducer##BC035931|HCST|10870|hematopoietic cell signal transducer##AF072844|HCST|10870|hematopoietic cell signal transducer##AF122904|HCST|10870|hematopoietic cell signal transducer##AY359058|HCST|10870|hematopoietic cell signal transducer##AF285447|HCST|10870|hematopoietic cell signal transducer##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein	0.0	0.0	
chr5	133923080	133923233	reg1004243.p1	8.130	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-61351	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-61793	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-80866	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	45341	-	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	61275	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	151154	+	D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand	1.972164	0.0	denovo_WM_7:45:0.366	denovo_WM_7:46:0.281	denovo_WM_7:62:0.257	denovo_WM_7:63:0.343
chr10	74014394	74014543	reg1004722.p1	8.129	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-38357	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-38680	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-38704	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	19356	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	100210	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	100458	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	0.994827	0.0	denovo_WM_7:-25:0.332	denovo_WM_7:-26:0.332	denovo_WM_7:-27:0.332
chr15	80258255	80258392	reg1002781.p1	8.128	+	TSC_hg19_v1_chr15_-_80216042 AF249277	-42285	-	NM_001100880 NM_001199757	-42660	-	NM_001199760	-42876	-	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	5228	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	93619	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	93706	+	AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001199760|ST20-MTHFS|100528021|ST20-MTHFS readthrough##BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6	0.972332	0.0	denovo_WM_7:-12:0.407
chr20	62644239	62644379	reg1004604.p1	8.128	+	TSC_hg19_v1_chr20_+_62612576 AB527848	-31723	+	AF221842 TSC_hg19_v1_chr20_+_62612506 AF026031 AK314310 AB019219 BC001666	-31778	+	TSC_hg19_v1_chr20_+_62612487 AK225993 AK001554	-31832	+	AJ243896 AF270652 BC111390 NM_018419 BC035513 BC038590 BC073971 TSC_hg19_v1_chr20_-_62680993 AB033888	36629	-	NM_198723	44129	+	NM_003195	49700	+	AF221842|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AF026031|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK314310|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AB019219|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##BC001666|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK225993|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK001554|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AJ243896|SOX18|54345|SRY (sex determining region Y)-box 18##AF270652|SOX18|54345|SRY (sex determining region Y)-box 18##BC111390|SOX18|54345|SRY (sex determining region Y)-box 18##NM_018419|SOX18|54345|SRY (sex determining region Y)-box 18##BC035513|SOX18|54345|SRY (sex determining region Y)-box 18##BC038590|SOX18|54345|SRY (sex determining region Y)-box 18##BC073971|SOX18|54345|SRY (sex determining region Y)-box 18##AB033888|SOX18|54345|SRY (sex determining region Y)-box 18##NM_198723|TCEA2|6919|transcription elongation factor A (SII), 2##NM_003195|TCEA2|6919|transcription elongation factor A (SII), 2	0.998167	0.0	
chr20	43213032	43213188	reg1003065.p1	8.127	+	AK309209 TSC_hg19_v1_chr20_+_43211227	-1887	+	NM_007066 NM_181804 NM_181805 BC104256 BC104257 TSC_hg19_v1_chr20_+_43160482 AK312048 AF182032	-52594	+	AK295120 AK309993 TSC_hg19_v1_chr20_-_43150704 NM_006811 NM_198941	-62403	-	AB528992 DQ892681 DQ895924 TSC_hg19_v1_chr20_-_43280341 X02994 AK223397	67188	-	BC007678 TSC_hg19_v1_chr20_-_43280372 BC040226 NM_000022	67265	-	BC058074 TSC_hg19_v1_chr20_+_43343549 AK074695	130432	+	AK309209|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_007066|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_181804|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_181805|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC104256|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC104257|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AK312048|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AF182032|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AK295120|SERINC3|10955|serine incorporator 3##AK309993|SERINC3|10955|serine incorporator 3##NM_006811|SERINC3|10955|serine incorporator 3##NM_198941|SERINC3|10955|serine incorporator 3##DQ892681|ADA|100|adenosine deaminase##DQ895924|ADA|100|adenosine deaminase##X02994|ADA|100|adenosine deaminase##AK223397|ADA|100|adenosine deaminase##BC007678|ADA|100|adenosine deaminase##BC040226|ADA|100|adenosine deaminase##NM_000022|ADA|100|adenosine deaminase##BC058074|WISP2|8839|WNT1 inducible signaling pathway protein 2	0.999212	0.0	denovo_WM_7:27:0.239	denovo_WM_7:28:0.239	denovo_WM_7:29:0.239	denovo_WM_7:30:0.239
chr14	81408021	81408165	reg1000372.p1	8.126	+	BC045834 AK309833 TSC_hg19_v1_chr14_-_81408073	-35	-	NM_152446	-2210	-	AK292210 NM_000793	-710697	-	AK303378 BC024205 NM_000369 NM_001018036 NM_001142626 M31774 BC108653 BC009237 M73747 M32215 BC063613 AB209207 BC120972 BC120973 BC127628 BC127629 BC141970 S49816 AB384880 AY429111 CU687778 S45272	13773	+	D14887 TSC_hg19_v1_chr14_-_81687285 NM_015859 BC050703	279187	-	D14886 NM_201595	279481	-	BC045834|CEP128|145508|centrosomal protein 128kDa##AK309833|CEP128|145508|centrosomal protein 128kDa##NM_152446|CEP128|145508|centrosomal protein 128kDa##AK292210|DIO2|1734|deiodinase, iodothyronine, type II##NM_000793|DIO2|1734|deiodinase, iodothyronine, type II##BC024205|TSHR|7253|thyroid stimulating hormone receptor##NM_000369|TSHR|7253|thyroid stimulating hormone receptor##NM_001018036|TSHR|7253|thyroid stimulating hormone receptor##NM_001142626|TSHR|7253|thyroid stimulating hormone receptor##M31774|TSHR|7253|thyroid stimulating hormone receptor##BC108653|TSHR|7253|thyroid stimulating hormone receptor##BC009237|TSHR|7253|thyroid stimulating hormone receptor##M73747|TSHR|7253|thyroid stimulating hormone receptor##M32215|TSHR|7253|thyroid stimulating hormone receptor##BC063613|TSHR|7253|thyroid stimulating hormone receptor##AB209207|TSHR|7253|thyroid stimulating hormone receptor##BC120972|TSHR|7253|thyroid stimulating hormone receptor##BC120973|TSHR|7253|thyroid stimulating hormone receptor##BC127628|TSHR|7253|thyroid stimulating hormone receptor##BC127629|TSHR|7253|thyroid stimulating hormone receptor##BC141970|TSHR|7253|thyroid stimulating hormone receptor##S49816|TSHR|7253|thyroid stimulating hormone receptor##AY429111|TSHR|7253|thyroid stimulating hormone receptor##S45272|TSHR|7253|thyroid stimulating hormone receptor##D14887|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_015859|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##BC050703|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##D14886|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_201595|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa	0.0	0.0	
chr20	51591737	51591887	reg1004458.p1	8.126	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-2034	+	BX640770 NM_173485	-2867	+	BC012759 BC041622 NM_018197 NM_022088 NM_199426 NM_199427	-783289	-	AK302570 NM_001193421	210009	+	AF041259 NM_006526	607823	-	TSC_hg19_v1_chr20_-_52210810 AK290350	618987	-	AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##BC012759|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC041622|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_018197|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_022088|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199426|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199427|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK290350|ZNF217|7764|zinc finger protein 217	0.977535	0.0	denovo_WM_7:-15:0.896
chr6	11668790	11668929	reg1005089.p1	8.126	+	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-130361	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-286319	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-435949	-	NM_001143948 NM_032744	110420	-	NM_002114	343864	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	621734	+	NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.99432	0.0	
chr9	107688691	107688871	reg1003500.p2	8.126	+	AB037924 TSC_hg19_v1_chr9_-_107666055	-22730	-	AB055982 AB445477 TSC_hg19_v1_chr9_-_107665989	-22784	-	AK002137 BC017914 BX647652 NM_018376 AK310397 BC005202	-162329	+	BC146856 TSC_hg19_v1_chr9_-_107690419 AF285167 BC034824 BC141816 BC142693 AK022254	1603	-	AK024328 TSC_hg19_v1_chr9_-_107690437 AF258627	1699	-	NM_005502 TSC_hg19_v1_chr9_-_107690527	1748	-	AB037924|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AB055982|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AB445477|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AK002137|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC017914|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BX647652|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##NM_018376|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##AK310397|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC005202|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC146856|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AF285167|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##BC034824|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AK024328|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AF258627|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##NM_005502|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1	1.973811	0.0	denovo_WM_7:-20:0.382	denovo_WM_7:-21:0.247	denovo_WM_7:-46:0.875
chr17	43389666	43389807	reg1003912.p1	8.121	+	BC028124 AF433663 AK302184 AK058143 NM_152343	-50281	-	TSC_hg19_v1_chr17_+_43325300 AK311429	-64432	+	AK096807 TSC_hg19_v1_chr17_-_43319268	-70540	-	TSC_hg19_v1_chr17_-_43394387 BC035576 BC022296 AK290203 AK313085 NM_003954	4639	-	TSC_hg19_v1_chr17_-_43487753 AK092891 AX747793 AK300880	98014	-	TSC_hg19_v1_chr17_-_43503000 AK125535 NM_199282	113265	-	BC028124|C17orf46|124783|chromosome 17 open reading frame 46##AF433663|C17orf46|124783|chromosome 17 open reading frame 46##AK302184|C17orf46|124783|chromosome 17 open reading frame 46##AK058143|C17orf46|124783|chromosome 17 open reading frame 46##NM_152343|C17orf46|124783|chromosome 17 open reading frame 46##AK311429|LOC100133991|100133991|uncharacterized LOC100133991##BC035576|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC022296|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK290203|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK313085|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##NM_003954|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK092891|ARHGAP27|201176|Rho GTPase activating protein 27##AK300880|ARHGAP27|201176|Rho GTPase activating protein 27##AK125535|ARHGAP27|201176|Rho GTPase activating protein 27##NM_199282|ARHGAP27|201176|Rho GTPase activating protein 27	0.034403	0.0	
chr3	113251056	113251216	reg1003876.p1	8.121	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-17143	-	TSC_hg19_v1_chr3_-_113233690 AK296160	-17450	-	BC101582 BC113553 AK056472 NM_001164496 NM_018338	-90797	-	NM_017699	81	+	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	164276	-	AK296456 TSC_hg19_v1_chr3_-_113464788	213578	-	AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296160|SPICE1|152185|spindle and centriole associated protein 1##BC101582|WDR52|55779|WD repeat domain 52##BC113553|WDR52|55779|WD repeat domain 52##AK056472|WDR52|55779|WD repeat domain 52##NM_001164496|WDR52|55779|WD repeat domain 52##NM_018338|WDR52|55779|WD repeat domain 52##NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.721474	0.0	denovo_WM_7:-4:0.296
chr4	9019214	9019297	reg1003355.p1	8.121	+	NM_001040071	-67779	+	AB593128 M99587 NM_018942	-145758	-	U83411 TSC_hg19_v1_chr4_+_8594521	-424732	+	BC100993 AF544011 AF544012 AY188990 AY509884 BC100991 BC100992 NM_001105662	197874	+	BC100993 AF544011 AF544012 AY509884 BC100991 NM_001105662	226348	+	BC100993 AF544011 AF544012 AY188990 AY509884 BC100991 BC100992 NM_001105662	240593	+	NM_001040071|LOC650293|650293|seven transmembrane helix receptor##M99587|HMX1|3166|H6 family homeobox 1##NM_018942|HMX1|3166|H6 family homeobox 1##U83411|CPZ|8532|carboxypeptidase Z##BC100993|USP17|391627|ubiquitin specific peptidase 17##AF544011|USP17|391627|ubiquitin specific peptidase 17##AF544012|USP17|391627|ubiquitin specific peptidase 17##AY188990|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##BC100993|USP17|391627|ubiquitin specific peptidase 17##AF544011|USP17|391627|ubiquitin specific peptidase 17##AF544012|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##BC100993|USP17|391627|ubiquitin specific peptidase 17##AF544011|USP17|391627|ubiquitin specific peptidase 17##AF544012|USP17|391627|ubiquitin specific peptidase 17##AY188990|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17	1.895754	0.0	denovo_WM_7:-28:0.758	denovo_WM_7:-43:0.750
chr5	82372816	82372946	reg1003968.p1	8.121	+	BC093982 BC112191 NM_001017971	-771716	+	TSC_hg19_v1_chr5_-_81574219 NM_001025	-798662	-	D14530 TSC_hg19_v1_chr5_-_81574174 AK291132 AK311772 D28396 BC070221	-798710	-	BC026285 TSC_hg19_v1_chr5_-_82373172 BX647979 BC107575 BC070122 BC028585	316	-	TSC_hg19_v1_chr5_-_82373255 NM_174909	381	-	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	502	+	BC093982|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC112191|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001017971|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001025|RPS23|6228|ribosomal protein S23##D14530|RPS23|6228|ribosomal protein S23##AK291132|RPS23|6228|ribosomal protein S23##AK311772|RPS23|6228|ribosomal protein S23##D28396|RPS23|6228|ribosomal protein S23##BC070221|RPS23|6228|ribosomal protein S23##BC026285|TMEM167A|153339|transmembrane protein 167A##BX647979|TMEM167A|153339|transmembrane protein 167A##BC107575|TMEM167A|153339|transmembrane protein 167A##BC070122|TMEM167A|153339|transmembrane protein 167A##BC028585|TMEM167A|153339|transmembrane protein 167A##NM_174909|TMEM167A|153339|transmembrane protein 167A##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4	0.0	0.0	
chr10	64971461	64971616	reg1001798.p1	8.120	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	-78392	+	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	-78507	+	AK312813 NM_001136178	-392612	-	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	57377	-	TSC_hg19_v1_chr10_+_65224979 BC007866 AK314171	253446	+	AK027280 EF068222 NM_032776 TSC_hg19_v1_chr10_-_65225738	254140	-	AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C##BC007866|LOC84989|84989|uncharacterized LOC84989##AK314171|LOC84989|84989|uncharacterized LOC84989##AK027280|JMJD1C|221037|jumonji domain containing 1C##EF068222|JMJD1C|221037|jumonji domain containing 1C##NM_032776|JMJD1C|221037|jumonji domain containing 1C	1.988582	0.0	
chr1	46798076	46798226	reg1004497.p1	8.120	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-28764	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-29103	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-29134	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	8292	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	61825	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	174521	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.999369	0.0	denovo_WM_7:7:0.824
chr11	128441447	128441612	reg1002879.p2	8.119	+	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-49395	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-49566	-	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1568224	+	BX640634 NM_001143820	15923	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	122269	+	TSC_hg19_v1_chr11_+_128563966 AK313370	122432	+	BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1	0.927788	0.0	
chr14	102188518	102188685	reg1002577.p1	8.119	+	BX161470 NM_001362 S79854 TSC_hg19_v1_chr14_+_102027831 AK292310 BC017717	-160838	+	BC150617 NM_001134888	-837418	-	AK092707 TSC_hg19_v1_chr14_+_101300861	-887766	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	39585	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	87582	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	87708	+	BX161470|DIO3|1735|deiodinase, iodothyronine, type III##NM_001362|DIO3|1735|deiodinase, iodothyronine, type III##S79854|DIO3|1735|deiodinase, iodothyronine, type III##BC017717|DIO3|1735|deiodinase, iodothyronine, type III##BC150617|RTL1|388015|retrotransposon-like 1##NM_001134888|RTL1|388015|retrotransposon-like 1##AK092707|MEG3|55384|maternally expressed 3 (non-protein coding)##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma	0.999776	0.0	denovo_WM_7:-1:0.230	denovo_WM_7:-2:0.230	denovo_WM_7:-3:0.230	denovo_WM_7:-4:0.230
chr6	11276072	11276191	reg1003316.p2	8.118	+	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-43221	-	L43821 TSC_hg19_v1_chr6_-_11232900	-43231	-	U64317 BC020686 TSC_hg19_v1_chr6_-_11232894 BC050740 BC040207	-43240	-	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	106409	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	262367	+	NM_001143948 NM_032744	503148	-	NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##L43821|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##U64317|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC020686|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC050740|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC040207|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105	0.0	0.0	
chr11	93324734	93324893	reg1002684.p2	8.116	+	AF197137 TSC_hg19_v1_chr11_-_93276558 BC031564 NM_020179	-48278	-	TSC_hg19_v1_chr11_+_93063782 NM_181645 BC017929	-260970	+	TSC_hg19_v1_chr11_-_92931106 AY162216 NM_152313 BC047374	-393728	-	TSC_hg19_v1_chr11_+_93394847 NM_033395 BC015989 BC017394	70021	+	AB051518 TSC_hg19_v1_chr11_+_93394877	70076	+	AF275800 TSC_hg19_v1_chr11_-_93474661 BC001972 AF086435 AK027016 NM_024116	149793	-	AF197137|C11orf75|56935|chromosome 11 open reading frame 75##BC031564|C11orf75|56935|chromosome 11 open reading frame 75##NM_020179|C11orf75|56935|chromosome 11 open reading frame 75##NM_181645|CCDC67|159989|coiled-coil domain containing 67##BC017929|CCDC67|159989|coiled-coil domain containing 67##AY162216|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_152313|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##BC047374|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_033395|KIAA1731|85459|KIAA1731##BC015989|KIAA1731|85459|KIAA1731##BC017394|KIAA1731|85459|KIAA1731##AB051518|KIAA1731|85459|KIAA1731##AF275800|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##BC001972|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##AF086435|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##AK027016|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##NM_024116|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa	1.985054	0.0	denovo_WM_7:-66:0.628	denovo_WM_7:-81:0.270	denovo_WM_7:-82:0.301	denovo_WM_7:-83:0.331
chr4	156597336	156597516	reg1003901.p1	8.115	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	-8609	+	NM_000856 NM_001130682 NM_001130686 NM_001130687 X66534 Y15723 AK312952 BC095395 TSC_hg19_v1_chr4_+_156587999 AK309950 AK096588 NM_001130683 NM_001130685 BX649180 AK226125 BX647200 BC012627	-9251	+	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	-299315	-	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	82778	+	TSC_hg19_v1_chr4_+_156680603 AK299916	83180	+	AB528059 AJ252011 NM_017419	189974	-	NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_000856|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130682|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130686|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130687|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##X66534|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##Y15723|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK312952|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC095395|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK309950|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK096588|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130683|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130685|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX649180|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK226125|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX647200|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC012627|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK299916|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AJ252011|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal##NM_017419|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal	0.997469	0.0	
chr4	79548926	79549080	reg1004319.p1	8.115	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	-76095	+	NM_005139 TSC_hg19_v1_chr4_+_79472790	-76233	+	BC006366 TSC_hg19_v1_chr4_-_79103287	-445718	-	TSC_hg19_v1_chr4_+_79697501 AL137661	148480	+	NM_017593 NM_198892 TSC_hg19_v1_chr4_+_79697532	148533	+	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	148620	+	BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3##NM_005139|ANXA3|306|annexin A3##AL137661|BMP2K|55589|BMP2 inducible kinase##NM_017593|BMP2K|55589|BMP2 inducible kinase##NM_198892|BMP2K|55589|BMP2 inducible kinase##AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase	0.992199	0.0	denovo_WM_7:19:0.715	denovo_WM_7:20:0.277
chr2	38161866	38162033	reg1003977.p1	8.110	+	BC024243 NM_001170792	-6048	+	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	-9517	+	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	-262560	-	NM_001170793 NM_144713 AK057516 AF435956	15651	+	U03688 BC012049 TSC_hg19_v1_chr2_-_38303294 AK297039 AK303862	141333	-	TSC_hg19_v1_chr2_-_38303315 AK312686 NM_000104	141371	-	BC024243|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170792|FAM82A1|151393|family with sequence similarity 82, member A1##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_001170793|FAM82A1|151393|family with sequence similarity 82, member A1##NM_144713|FAM82A1|151393|family with sequence similarity 82, member A1##AK057516|FAM82A1|151393|family with sequence similarity 82, member A1##AF435956|FAM82A1|151393|family with sequence similarity 82, member A1##U03688|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##BC012049|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##AK303862|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##AK312686|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##NM_000104|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1	0.623374	0.0	denovo_WM_7:3:0.623
chr13	67234405	67234523	reg1003359.p2	8.109	+	AK289924 NM_022843	-5244810	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-5245211	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-6262985	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	570040	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	3448077	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	5205795	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.042369	0.0	
chr22	31617958	31618091	reg1003992.p1	8.108	+	TSC_hg19_v1_chr22_+_31608285 CR456513 CU013112 CU013400 AB587469 AB451269 AB451396	-9677	+	AK291640 D45906 TSC_hg19_v1_chr22_+_31608280	-9744	+	NM_005569 TSC_hg19_v1_chr22_+_31608257 AK093554 AX748198	-9768	+	AK299112 TSC_hg19_v1_chr22_+_31644324 NM_001031801 NM_016733	26306	+	TSC_hg19_v1_chr22_+_31644372 AK314391 AK293774 AL117466 D85527 BC013051	26396	+	TSC_hg19_v1_chr22_-_31686709 BC041903 AK093768	68699	-	CR456513|LIMK2|3985|LIM domain kinase 2##CU013112|LIMK2|3985|LIM domain kinase 2##CU013400|LIMK2|3985|LIM domain kinase 2##AB451269|LIMK2|3985|LIM domain kinase 2##AB451396|LIMK2|3985|LIM domain kinase 2##AK291640|LIMK2|3985|LIM domain kinase 2##D45906|LIMK2|3985|LIM domain kinase 2##NM_005569|LIMK2|3985|LIM domain kinase 2##AK093554|LIMK2|3985|LIM domain kinase 2##AK299112|LIMK2|3985|LIM domain kinase 2##NM_001031801|LIMK2|3985|LIM domain kinase 2##NM_016733|LIMK2|3985|LIM domain kinase 2##AK314391|LIMK2|3985|LIM domain kinase 2##AK293774|LIMK2|3985|LIM domain kinase 2##AL117466|LIMK2|3985|LIM domain kinase 2##D85527|LIMK2|3985|LIM domain kinase 2##BC013051|LIMK2|3985|LIM domain kinase 2##BC041903|PIK3IP1|113791|phosphoinositide-3-kinase interacting protein 1##AK093768|PIK3IP1|113791|phosphoinositide-3-kinase interacting protein 1	0.983838	0.0	denovo_WM_7:43:0.313	denovo_WM_7:44:0.310
chr17	58729887	58730058	reg1003328.p1	8.107	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-52283	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-52428	+	AK307666 TSC_hg19_v1_chr17_-_58603582 BC018121 AF017782 D86981 NM_006380	-126435	-	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	25241	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	747264	+	TSC_hg19_v1_chr17_+_59477477 U28049	747524	+	BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK307666|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##BC018121|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##AF017782|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##D86981|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##NM_006380|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2	1.074491	0.0	
chr10	111968159	111968315	reg1003321.p1	8.106	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-878	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-200270	+	TSC_hg19_v1_chr10_+_111767741 BX647403 NM_001121 NM_016824 BC062559 BX648016	-200508	+	BC012907 NM_001008541	1751	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	17584	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	96356	-	BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##BX647403|ADD3|120|adducin 3 (gamma)##NM_001121|ADD3|120|adducin 3 (gamma)##NM_016824|ADD3|120|adducin 3 (gamma)##BC062559|ADD3|120|adducin 3 (gamma)##BX648016|ADD3|120|adducin 3 (gamma)##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1	0.99809	0.0	denovo_WM_7:-47:0.234	denovo_WM_7:-48:0.234	denovo_WM_7:-49:0.234	denovo_WM_7:-50:0.234
chr11	121337668	121337775	reg1003416.p2	8.106	+	TSC_hg19_v1_chr11_+_121323112 AK309523	-14546	+	TSC_hg19_v1_chr11_+_121323026 NM_003105 Y08110 BC137171 AB463277	-14772	+	TSC_hg19_v1_chr11_+_121163523 BC050427 NM_001024956 BC012333	-174167	+	TSC_hg19_v1_chr11_+_121461071 AK294404	123377	+	BC130361 BC130363 AF303179 NM_001001786	649140	-	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	1188826	+	AK309523|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##NM_003105|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##Y08110|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC137171|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC050427|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_001024956|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##BC012333|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK294404|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC130361|BLID|414899|BH3-like motif containing, cell death inducer##BC130363|BLID|414899|BH3-like motif containing, cell death inducer##AF303179|BLID|414899|BH3-like motif containing, cell death inducer##NM_001001786|BLID|414899|BH3-like motif containing, cell death inducer##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B	2.057146	0.0	denovo_WM_7:12:0.987	denovo_WM_7:27:0.988
chr3	187086035	187086193	reg1004347.p1	8.106	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	-76475	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	-170772	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	-228858	-	BC013161 NM_022147 AJ251832 AY562238 DQ891046 DQ894225	84	+	BC032625 AK312177 TSC_hg19_v1_chr3_-_187388181 NM_001048	302038	-	BC068081 NM_001004312	334230	-	BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC013161|RTP4|64108|receptor (chemosensory) transporter protein 4##NM_022147|RTP4|64108|receptor (chemosensory) transporter protein 4##AJ251832|RTP4|64108|receptor (chemosensory) transporter protein 4##AY562238|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ891046|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ894225|RTP4|64108|receptor (chemosensory) transporter protein 4##BC032625|SST|6750|somatostatin##AK312177|SST|6750|somatostatin##NM_001048|SST|6750|somatostatin##BC068081|RTP2|344892|receptor (chemosensory) transporter protein 2##NM_001004312|RTP2|344892|receptor (chemosensory) transporter protein 2	0.0	0.0	
chr3	15838649	15838802	reg1003914.p1	8.105	+	AY367056 NM_001195099 BC035170 BC048975	-40648	-	TSC_hg19_v1_chr3_+_15643452 AK301838	-195262	+	AK297033 TSC_hg19_v1_chr3_+_15643251 NM_000060 AK313252 AK294301 U03274 BC012099 CU680214	-195477	+	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	957	-	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	62287	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	377469	+	AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28##AK301838|BTD|686|biotinidase##AK297033|BTD|686|biotinidase##NM_000060|BTD|686|biotinidase##AK313252|BTD|686|biotinidase##AK294301|BTD|686|biotinidase##U03274|BTD|686|biotinidase##BC012099|BTD|686|biotinidase##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	0.986459	0.0	denovo_WM_7:-5:0.404
chr12	8526480	8526604	reg1005068.p1	8.104	+	BC042608 AK001270 NM_018088	-146339	-	TSC_hg19_v1_chr12_+_8332811 AK096301 BC048994 AK311411 BC034777	-193716	+	NM_001004328	-201393	+	AK308011 AY321309 NM_001007033 AY365135 BC132933 BC132935	82060	+	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	139689	+	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	166932	-	BC042608|FAM90A1|55138|family with sequence similarity 90, member A1##AK001270|FAM90A1|55138|family with sequence similarity 90, member A1##NM_018088|FAM90A1|55138|family with sequence similarity 90, member A1##AK096301|FAM66C|440078|family with sequence similarity 66, member C##BC048994|FAM66C|440078|family with sequence similarity 66, member C##BC034777|FAM66C|440078|family with sequence similarity 66, member C##NM_001004328|ZNF705A|440077|zinc finger protein 705A##AK308011|CLEC6A|93978|C-type lectin domain family 6, member A##AY321309|CLEC6A|93978|C-type lectin domain family 6, member A##NM_001007033|CLEC6A|93978|C-type lectin domain family 6, member A##AY365135|CLEC6A|93978|C-type lectin domain family 6, member A##BC132933|CLEC6A|93978|C-type lectin domain family 6, member A##BC132935|CLEC6A|93978|C-type lectin domain family 6, member A##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E	0.988663	0.0	denovo_WM_7:39:0.630	denovo_WM_7:41:0.201
chr5	23013029	23013205	reg1003793.p1	8.104	+	L33477 NM_004061	-159387	-	BC047608 TSC_hg19_v1_chr5_-_22853454	-159671	-	TSC_hg19_v1_chr5_-_22212879 AK314800	-800236	-	DQ388610 NM_020227 AK301776	494626	+	NM_006727	1631967	-	BC107594 BC109384 BC113745 AB035302 AK307779 NM_016279 AK308697	4025554	-	L33477|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_004061|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##BC047608|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##AK314800|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##DQ388610|PRDM9|56979|PR domain containing 9##NM_020227|PRDM9|56979|PR domain containing 9##AK301776|PRDM9|56979|PR domain containing 9##NM_006727|CDH10|1008|cadherin 10, type 2 (T2-cadherin)##BC107594|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC109384|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC113745|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AB035302|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK307779|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_016279|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK308697|CDH9|1007|cadherin 9, type 2 (T1-cadherin)	0.0	0.0	
chr1	176866618	176866762	reg1004052.p1	8.103	+	AF342989 AF342990 BC062665 BC104644 NM_020318 NM_021936 BC152552	-434378	+	AF527539 TSC_hg19_v1_chr1_-_176176377	-690314	-	TSC_hg19_v1_chr1_-_176176372 BC094728 NM_001001740 NM_022457	-690321	-	BC142697 AB006627 BC146795 TSC_hg19_v1_chr1_-_177133827	267135	-	AK307820 AK295126 BC032870 BC049377 TSC_hg19_v1_chr1_-_177134004 NM_004319 NM_207108	267296	-	TSC_hg19_v1_chr1_-_177134042 AK309094	267385	-	AF342989|PAPPA2|60676|pappalysin 2##AF342990|PAPPA2|60676|pappalysin 2##BC062665|PAPPA2|60676|pappalysin 2##BC104644|PAPPA2|60676|pappalysin 2##NM_020318|PAPPA2|60676|pappalysin 2##NM_021936|PAPPA2|60676|pappalysin 2##BC152552|PAPPA2|60676|pappalysin 2##AF527539|RFWD2|64326|ring finger and WD repeat domain 2##BC094728|RFWD2|64326|ring finger and WD repeat domain 2##NM_001001740|RFWD2|64326|ring finger and WD repeat domain 2##NM_022457|RFWD2|64326|ring finger and WD repeat domain 2##BC142697|ASTN1|460|astrotactin 1##AB006627|ASTN1|460|astrotactin 1##BC146795|ASTN1|460|astrotactin 1##AK307820|ASTN1|460|astrotactin 1##AK295126|ASTN1|460|astrotactin 1##BC032870|ASTN1|460|astrotactin 1##BC049377|ASTN1|460|astrotactin 1##NM_004319|ASTN1|460|astrotactin 1##NM_207108|ASTN1|460|astrotactin 1##AK309094|ASTN1|460|astrotactin 1	0.0	0.463504	CTCF.p2:-23:0.464
chrX	129317782	129317890	reg1003017.p2	8.103	+	TSC_hg19_v1_chrX_+_129305943 BC001157 BC001704 BC009996 NM_004794 AF498959 BT007038 AK094927	-11987	+	BC111065 TSC_hg19_v1_chrX_-_129299819 NM_001130847 NM_004208 NM_145812 NM_145813	-18005	-	TSC_hg19_v1_chrX_-_129299743 AK000775 AL049703 BC139738	-18114	-	TSC_hg19_v1_chrX_-_129402874 AK000102 AL834333 AL133204 AK290373 BC051728 NM_017666	85010	-	TSC_hg19_v1_chrX_+_129473927 AK304649 AK297499 AK309433 AK296155 NM_003951 NM_022810 BC119666 BC119667 AF155809 AF155810 AF155811 AY358099	156196	+	AY288416 BC101166 BC101167 BC101168 AB529244 HQ258187 BC095502 BC126179 BC126181 NM_178471	201629	-	BC001157|RAB33A|9363|RAB33A, member RAS oncogene family##BC001704|RAB33A|9363|RAB33A, member RAS oncogene family##BC009996|RAB33A|9363|RAB33A, member RAS oncogene family##NM_004794|RAB33A|9363|RAB33A, member RAS oncogene family##AF498959|RAB33A|9363|RAB33A, member RAS oncogene family##BT007038|RAB33A|9363|RAB33A, member RAS oncogene family##AK094927|RAB33A|9363|RAB33A, member RAS oncogene family##BC111065|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_001130847|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_004208|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_145812|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_145813|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AK000775|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AL049703|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##BC139738|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AK000102|ZNF280C|55609|zinc finger protein 280C##AL834333|ZNF280C|55609|zinc finger protein 280C##AL133204|ZNF280C|55609|zinc finger protein 280C##AK290373|ZNF280C|55609|zinc finger protein 280C##BC051728|ZNF280C|55609|zinc finger protein 280C##NM_017666|ZNF280C|55609|zinc finger protein 280C##AK297499|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK309433|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK296155|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_003951|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_022810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119666|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119667|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155809|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155811|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY358099|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY288416|GPR119|139760|G protein-coupled receptor 119##BC101166|GPR119|139760|G protein-coupled receptor 119##BC101167|GPR119|139760|G protein-coupled receptor 119##BC101168|GPR119|139760|G protein-coupled receptor 119##HQ258187|GPR119|139760|G protein-coupled receptor 119##BC095502|GPR119|139760|G protein-coupled receptor 119##BC126179|GPR119|139760|G protein-coupled receptor 119##BC126181|GPR119|139760|G protein-coupled receptor 119##NM_178471|GPR119|139760|G protein-coupled receptor 119	0.999109	0.0	denovo_WM_7:37:0.902
chr6	42897895	42898012	reg1003691.p1	8.102	+	TSC_hg19_v1_chr6_+_42897237 BC008898 BC008961 AB527945 EU446764	-682	+	TSC_hg19_v1_chr6_+_42897217 BC008133	-744	+	NM_006586 BC004423 U80744 BC011767 AY358960	-1033	+	TSC_hg19_v1_chr6_+_42928491 BC032627 NM_018960 AF101477 AB590322 DQ890819 DQ893974	30531	+	AB051076 AB051077 AB051078 AB590555 BC033487 TSC_hg19_v1_chr6_-_42946920 BC048331 AK314237 AK225704	48956	-	AB208906 TSC_hg19_v1_chr6_-_42946954 D83703 NM_000287	49008	-	BC008898|CNPY3|10695|canopy 3 homolog (zebrafish)##BC008961|CNPY3|10695|canopy 3 homolog (zebrafish)##EU446764|CNPY3|10695|canopy 3 homolog (zebrafish)##BC008133|CNPY3|10695|canopy 3 homolog (zebrafish)##NM_006586|CNPY3|10695|canopy 3 homolog (zebrafish)##BC004423|CNPY3|10695|canopy 3 homolog (zebrafish)##U80744|CNPY3|10695|canopy 3 homolog (zebrafish)##BC011767|CNPY3|10695|canopy 3 homolog (zebrafish)##AY358960|CNPY3|10695|canopy 3 homolog (zebrafish)##BC032627|GNMT|27232|glycine N-methyltransferase##NM_018960|GNMT|27232|glycine N-methyltransferase##AF101477|GNMT|27232|glycine N-methyltransferase##DQ890819|GNMT|27232|glycine N-methyltransferase##DQ893974|GNMT|27232|glycine N-methyltransferase##AB051076|PEX6|5190|peroxisomal biogenesis factor 6##AB051077|PEX6|5190|peroxisomal biogenesis factor 6##AB051078|PEX6|5190|peroxisomal biogenesis factor 6##BC033487|PEX6|5190|peroxisomal biogenesis factor 6##BC048331|PEX6|5190|peroxisomal biogenesis factor 6##AK314237|PEX6|5190|peroxisomal biogenesis factor 6##AK225704|PEX6|5190|peroxisomal biogenesis factor 6##AB208906|PEX6|5190|peroxisomal biogenesis factor 6##D83703|PEX6|5190|peroxisomal biogenesis factor 6##NM_000287|PEX6|5190|peroxisomal biogenesis factor 6	0.0	0.0	
chr6	13795339	13795478	reg1003769.p2	8.101	+	BC052781 TSC_hg19_v1_chr6_-_13711955	-83434	-	TSC_hg19_v1_chr6_-_13711730 AB055311 NM_005493	-83673	-	AB008515 TSC_hg19_v1_chr6_-_13711498	-83917	-	BC008234 TSC_hg19_v1_chr6_-_13814790 BC016850 NM_001031713 AK024611	19360	-	NM_001165034	129268	+	NM_001165032 NM_152737 TSC_hg19_v1_chr6_+_13925202 AK315528 BC030666 BC050030	129758	+	BC052781|RANBP9|10048|RAN binding protein 9##AB055311|RANBP9|10048|RAN binding protein 9##NM_005493|RANBP9|10048|RAN binding protein 9##AB008515|RANBP9|10048|RAN binding protein 9##BC008234|CCDC90A|63933|coiled-coil domain containing 90A##BC016850|CCDC90A|63933|coiled-coil domain containing 90A##NM_001031713|CCDC90A|63933|coiled-coil domain containing 90A##AK024611|CCDC90A|63933|coiled-coil domain containing 90A##NM_001165034|RNF182|221687|ring finger protein 182##NM_001165032|RNF182|221687|ring finger protein 182##NM_152737|RNF182|221687|ring finger protein 182##AK315528|RNF182|221687|ring finger protein 182##BC030666|RNF182|221687|ring finger protein 182##BC050030|RNF182|221687|ring finger protein 182	2.107602	0.99608	denovo_WM_7:-8:0.430	denovo_WM_7:-14:0.430	denovo_WM_7:-42:0.480	denovo_WM_7:-47:0.262	CTCF.p2:102:0.996
chr18	47664925	47665067	reg1004777.p1	8.100	+	TSC_hg19_v1_chr18_-_47376221 BC033527	-288807	-	TSC_hg19_v1_chr18_+_47340396 AK123464	-324605	+	TSC_hg19_v1_chr18_-_47340253 AK054673 NM_006111 AK314462	-324726	-	AB384567 AB032945 TSC_hg19_v1_chr18_-_47721518 AB290160 BC032511 NM_001080467	56376	-	AB527886 BC030606 NM_145020 AK302114	127836	-	AF078830 AF078831 AF078832 AF078833 EF488685 AB527669 NM_001204151	141377	-	BC033527|MYO5B|4645|myosin VB##AK054673|ACAA2|10449|acetyl-CoA acyltransferase 2##NM_006111|ACAA2|10449|acetyl-CoA acyltransferase 2##AK314462|ACAA2|10449|acetyl-CoA acyltransferase 2##AB032945|MYO5B|4645|myosin VB##AB290160|MYO5B|4645|myosin VB##BC032511|MYO5B|4645|myosin VB##NM_001080467|MYO5B|4645|myosin VB##BC030606|CCDC11|220136|coiled-coil domain containing 11##NM_145020|CCDC11|220136|coiled-coil domain containing 11##AK302114|CCDC11|220136|coiled-coil domain containing 11##AF078830|MBD1|4152|methyl-CpG binding domain protein 1##AF078831|MBD1|4152|methyl-CpG binding domain protein 1##AF078832|MBD1|4152|methyl-CpG binding domain protein 1##AF078833|MBD1|4152|methyl-CpG binding domain protein 1##EF488685|MBD1|4152|methyl-CpG binding domain protein 1##NM_001204151|MBD1|4152|methyl-CpG binding domain protein 1	0.997008	0.0	denovo_WM_7:33:0.771
chr4	129747671	129747787	reg1003358.p2	8.099	+	TSC_hg19_v1_chr4_+_129732427 BC032376	-15276	+	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	-16859	+	AK131272 NM_006320	-537746	-	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	266861	-	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	267138	+	NM_001099783	269552	+	BC032376|PHF17|79960|PHD finger protein 17##NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33	0.985467	0.0	denovo_WM_7:-32:0.476	denovo_WM_7:-33:0.476
chr16	86106584	86106728	reg1004298.p1	8.098	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-173870	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-273321	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-273351	+	TSC_hg19_v1_chr16_-_86542463 AK091834	435808	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	437500	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	437584	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	1.181467	0.983951	CTCF.p2:-38:0.984
chr10	111970803	111970944	reg1003511.p2	8.096	+	BC012907 NM_001008541	-885	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-3514	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-202906	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	14948	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	93720	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	93827	-	BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1	0.999973	0.0	denovo_WM_7:-31:0.304	denovo_WM_7:-32:0.304	denovo_WM_7:-33:0.304
chr3	183243529	183243690	reg1004136.p1	8.096	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-78179	+	NM_015078 BC064632 AK124500 AK310962	-97670	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-272003	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	29843	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	109791	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	172013	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	0.0	0.0	
chr1	234859848	234859987	reg1001934.p1	8.094	+	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-114671	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-116059	-	TSC_hg19_v1_chr1_-_234743841 AK299768	-116086	-	TSC_hg19_v1_chr1_-_234895746 AF193050	35857	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	432172	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	432314	-	BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AF193050|PP2672|100130249|uncharacterized LOC100130249##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)	0.0	0.0	
chrX	130937122	130937302	reg1000063.p2	8.092	+	BC137050 AB529233 NM_001004486	-259214	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-513800	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-513950	-	TSC_hg19_v1_chrX_-_130964633 AK097911	27439	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	220109	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	220428	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.975091	CTCF.p2:36:0.975
chr11	18267997	18268129	reg1004012.p1	8.091	+	NM_006512 TSC_hg19_v1_chr11_-_18258385	-9676	-	BC007026 AK312182 M81349 TSC_hg19_v1_chr11_-_18258350	-9719	-	BC095509 NM_054032	-73680	+	M26152 AK307163 BC020795 BC058008 TSC_hg19_v1_chr11_-_18270183 NM_001127380 NM_001199744 NM_030754	2130	-	NM_000331 NM_001178006 NM_199161 TSC_hg19_v1_chr11_+_18287810 BC007022 BC105796	19745	+	BC033640 TSC_hg19_v1_chr11_-_18343678 AK291663 AK292436 AB023234 AF534400 AF534401 AF534402 NM_007216 NM_181507 NM_181508 AY142148	75647	-	NM_006512|SAA4|6291|serum amyloid A4, constitutive##BC007026|SAA4|6291|serum amyloid A4, constitutive##AK312182|SAA4|6291|serum amyloid A4, constitutive##M81349|SAA4|6291|serum amyloid A4, constitutive##BC095509|MRGPRX4|117196|MAS-related GPR, member X4##NM_054032|MRGPRX4|117196|MAS-related GPR, member X4##M26152|SAA2|6289|serum amyloid A2##AK307163|SAA2|6289|serum amyloid A2##BC020795|SAA2|6289|serum amyloid A2##BC058008|SAA2|6289|serum amyloid A2##NM_001127380|SAA2|6289|serum amyloid A2##NM_001199744|SAA2-SAA4|100528017|SAA2-SAA4 readthrough##NM_030754|SAA2|6289|serum amyloid A2##NM_000331|SAA1|6288|serum amyloid A1##NM_001178006|SAA1|6288|serum amyloid A1##NM_199161|SAA1|6288|serum amyloid A1##BC007022|SAA1|6288|serum amyloid A1##BC105796|SAA1|6288|serum amyloid A1##BC033640|HPS5|11234|Hermansky-Pudlak syndrome 5##AK291663|HPS5|11234|Hermansky-Pudlak syndrome 5##AK292436|HPS5|11234|Hermansky-Pudlak syndrome 5##AB023234|HPS5|11234|Hermansky-Pudlak syndrome 5##AF534400|HPS5|11234|Hermansky-Pudlak syndrome 5##AF534401|HPS5|11234|Hermansky-Pudlak syndrome 5##AF534402|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_007216|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_181507|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_181508|HPS5|11234|Hermansky-Pudlak syndrome 5	0.984083	0.0	denovo_WM_7:29:0.812
chr15	39915793	39915930	reg1003878.p1	8.091	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	-42532	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	-372936	+	AK093014 AX747856 BC119016 BC119810 NM_207444	-927063	+	AK093308 AX748045 BC045191 NM_152597	159167	-	AK091251 TSC_hg19_v1_chr15_+_40075106	159245	+	CU688250 TSC_hg19_v1_chr15_-_40212342	296424	-	AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1	0.0	0.0	
chr21	45564884	45564998	reg1002886.p1	8.090	+	TSC_hg19_v1_chr21_+_45553564 D86062 BC003587 D86061	-11380	+	TSC_hg19_v1_chr21_+_45553491 NM_004649 NM_198155 U53003 BC002370 Y07572	-11436	+	TSC_hg19_v1_chr21_+_45527269 U53346 X95263 BC013309 BC014988	-37642	+	AF216749 CU687930 AB528572 AF199028 BC064637 AF289028 TSC_hg19_v1_chr21_-_45660825 AB014553 NM_015259	95825	-	TSC_hg19_v1_chr21_-_45660850 AK090492 AK290192 AK294031 AK311496 AK314369 AX746477	95916	-	AF194032 NM_013369 NM_175867	117157	-	D86062|C21orf33|8209|chromosome 21 open reading frame 33##BC003587|C21orf33|8209|chromosome 21 open reading frame 33##D86061|C21orf33|8209|chromosome 21 open reading frame 33##NM_004649|C21orf33|8209|chromosome 21 open reading frame 33##NM_198155|C21orf33|8209|chromosome 21 open reading frame 33##U53003|C21orf33|8209|chromosome 21 open reading frame 33##BC002370|C21orf33|8209|chromosome 21 open reading frame 33##Y07572|C21orf33|8209|chromosome 21 open reading frame 33##U53346|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##X95263|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC013309|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC014988|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##AF216749|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF199028|ICOSLG|23308|inducible T-cell co-stimulator ligand##BC064637|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF289028|ICOSLG|23308|inducible T-cell co-stimulator ligand##AB014553|ICOSLG|23308|inducible T-cell co-stimulator ligand##NM_015259|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK090492|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK290192|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK294031|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK311496|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK314369|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF194032|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_013369|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_175867|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like	0.992733	0.0	denovo_WM_7:-1:0.922
chr6	90060664	90060844	reg1001947.p2	8.088	+	BC130352 BC130354 M86868 NM_002043	-35803	-	AK313609 NM_002042	-133259	-	TSC_hg19_v1_chr6_+_89855838 BC035036 NM_001010853 AK302464 BC045583	-204873	+	AB464335 DQ895144 EU176317 AF161502 U93243 TSC_hg19_v1_chr6_-_90062340	1562	-	AJ245898 TSC_hg19_v1_chr6_-_90062433 AF151834	1639	-	TSC_hg19_v1_chr6_-_90062439 AK223464 AK300629	1686	-	BC130352|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##BC130354|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##M86868|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##NM_002043|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##AK313609|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##NM_002042|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##BC035036|PM20D2|135293|peptidase M20 domain containing 2##NM_001010853|PM20D2|135293|peptidase M20 domain containing 2##AK302464|PM20D2|135293|peptidase M20 domain containing 2##BC045583|PM20D2|135293|peptidase M20 domain containing 2##DQ895144|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##EU176317|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF161502|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##U93243|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AJ245898|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF151834|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK223464|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK300629|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U	1.990799	0.0	denovo_WM_7:41:0.250	denovo_WM_7:42:0.674	denovo_WM_7:57:0.821
chr4	121687010	121687126	reg1003687.p1	8.087	+	EU831987 EU832080 AB528692 AF394735 TSC_hg19_v1_chr4_-_120987954 U65410 BC070283 AJ000186 BC005945 BC000356 U31278 AK223433 AK313827 AK298228 NM_002358	-699114	-	D89094 TSC_hg19_v1_chr4_-_120550167	-1136906	-	AB527373 AM393036 AM393270 AM393448 AK290189 BC126233 AJ004865 AF155192 TSC_hg19_v1_chr4_-_120549960 AF043731 NM_001083	-1137165	-	TSC_hg19_v1_chr4_-_121843992 AB464059 BC121037 BC121038 AK314293 AK310958 AF272897 AK056352 NM_018699 BC066942	156927	-	BC019351 AK289615 NM_024574 TSC_hg19_v1_chr4_-_121993690	306562	-	AF277289 AJ320534 AK290409 BC128408 EF585496 NM_024873	398416	-	EU831987|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##EU832080|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##AF394735|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##BC070283|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##AJ000186|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##BC005945|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##BC000356|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##AK223433|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##AK313827|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##AK298228|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##NM_002358|MAD2L1|4085|MAD2 mitotic arrest deficient-like 1 (yeast)##AM393036|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393270|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AM393448|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AK290189|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##BC126233|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AJ004865|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AF155192|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##AF043731|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##NM_001083|PDE5A|8654|phosphodiesterase 5A, cGMP-specific##BC121037|PRDM5|11107|PR domain containing 5##BC121038|PRDM5|11107|PR domain containing 5##AK314293|PRDM5|11107|PR domain containing 5##AK310958|PRDM5|11107|PR domain containing 5##AF272897|PRDM5|11107|PR domain containing 5##AK056352|PRDM5|11107|PR domain containing 5##NM_018699|PRDM5|11107|PR domain containing 5##BC066942|PRDM5|11107|PR domain containing 5##BC019351|NDNF|79625|neuron-derived neurotrophic factor##AK289615|NDNF|79625|neuron-derived neurotrophic factor##NM_024574|NDNF|79625|neuron-derived neurotrophic factor##AF277289|TNIP3|79931|TNFAIP3 interacting protein 3##AJ320534|TNIP3|79931|TNFAIP3 interacting protein 3##AK290409|TNIP3|79931|TNFAIP3 interacting protein 3##BC128408|TNIP3|79931|TNFAIP3 interacting protein 3##EF585496|TNIP3|79931|TNFAIP3 interacting protein 3##NM_024873|TNIP3|79931|TNFAIP3 interacting protein 3	1.988234	0.0	denovo_WM_7:42:0.203	denovo_WM_7:43:0.755	denovo_WM_7:58:0.826
chr18	3448589	3448769	reg1002934.p1	8.085	+	NM_173207 AK291112	-1062	+	NM_174886	-36608	+	NM_001144944 NM_001144945	-186016	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	1401	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	2952	+	NM_173211	5092	+	NM_173207|TGIF1|7050|TGFB-induced factor homeobox 1##AK291112|TGIF1|7050|TGFB-induced factor homeobox 1##NM_174886|TGIF1|7050|TGFB-induced factor homeobox 1##NM_001144944|MYL12B|103910|myosin, light chain 12B, regulatory##NM_001144945|MYL12B|103910|myosin, light chain 12B, regulatory##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1	0.994629	0.0	
chr5	130615093	130615273	reg1004214.p1	8.085	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-15383	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-15415	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-15427	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	355574	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	355636	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	355695	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.04696	0.0	
chr12	102330157	102330285	reg1003715.p1	8.084	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	-58763	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	-59103	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-105635	-	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	125529	-	TSC_hg19_v1_chr12_-_102455791 BC010889	125556	-	TSC_hg19_v1_chr12_-_102455912 AK314970 AK223339 AF151874 AF155655 NM_016053	125640	-	AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##CR457171|CCDC53|51019|coiled-coil domain containing 53##BC010889|CCDC53|51019|coiled-coil domain containing 53##AK314970|CCDC53|51019|coiled-coil domain containing 53##AK223339|CCDC53|51019|coiled-coil domain containing 53##AF151874|CCDC53|51019|coiled-coil domain containing 53##AF155655|CCDC53|51019|coiled-coil domain containing 53##NM_016053|CCDC53|51019|coiled-coil domain containing 53	0.0	0.0	
chr5	88057249	88057372	reg1004000.p1	8.084	+	TSC_hg19_v1_chr5_-_87980643 AK125167	-76603	-	AK311230 TSC_hg19_v1_chr5_-_87969144 AK309800 AK308694 BC036480	-88165	-	BC047059 TSC_hg19_v1_chr5_+_87564842	-492461	+	AB384888 EU446634 EU832832 FM163484 FM180475 GQ129219 GQ129221 GQ129392 GQ129393 NM_001193348 NM_001193349	62363	-	TSC_hg19_v1_chr5_-_88179002 AK312472 L08895 AK307883 BC026341	121696	-	TSC_hg19_v1_chr5_-_88179279 NM_001193350 NM_002397	121975	-	AK311230|LINC00461|645323|long intergenic non-protein coding RNA 461##AK309800|LINC00461|645323|long intergenic non-protein coding RNA 461##AK308694|LINC00461|645323|long intergenic non-protein coding RNA 461##BC036480|LINC00461|645323|long intergenic non-protein coding RNA 461##BC047059|LOC100505894|100505894|uncharacterized LOC100505894##EU446634|MEF2C|4208|myocyte enhancer factor 2C##EU832832|MEF2C|4208|myocyte enhancer factor 2C##FM163484|MEF2C|4208|myocyte enhancer factor 2C##FM180475|MEF2C|4208|myocyte enhancer factor 2C##GQ129219|MEF2C|4208|myocyte enhancer factor 2C##GQ129221|MEF2C|4208|myocyte enhancer factor 2C##GQ129392|MEF2C|4208|myocyte enhancer factor 2C##GQ129393|MEF2C|4208|myocyte enhancer factor 2C##NM_001193348|MEF2C|4208|myocyte enhancer factor 2C##NM_001193349|MEF2C|4208|myocyte enhancer factor 2C##AK312472|MEF2C|4208|myocyte enhancer factor 2C##L08895|MEF2C|4208|myocyte enhancer factor 2C##AK307883|MEF2C|4208|myocyte enhancer factor 2C##BC026341|MEF2C|4208|myocyte enhancer factor 2C##NM_001193350|MEF2C|4208|myocyte enhancer factor 2C##NM_002397|MEF2C|4208|myocyte enhancer factor 2C	0.099068	0.0	
chr1	2512841	2512987	reg1003910.p1	8.083	+	AK300515 NM_003820 U70321 AK303468 BC029848 BC002794 BC018882 U81232 AF153978 AK310076 AB208808 AY358879 CU678202 AB590572 DQ893000 DQ896755 AF373877 AF373878 CR456909	-24961	+	BC087840 DQ272660 NM_001010926	-51231	-	TSC_hg19_v1_chr1_-_2458040 AL442072 BC043496 AK001644 AK223546 AK303127 AK309860 NM_018216 AK295301	-54850	-	TSC_hg19_v1_chr1_+_2518261 NM_001195736 NM_001195737 NM_001195738 NM_001195740 NM_001195741 NM_152371 AK303504 AK291908 AK298926 AK075273 AF425266 BC022547 AK057027 AK308034 AK316243	5274	+	TSC_hg19_v1_chr1_+_2518534 AK094901	5600	+	AK093058 AX747891 NM_033467 TSC_hg19_v1_chr1_-_2564497	51551	-	AK300515|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##NM_003820|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U70321|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK303468|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC029848|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC002794|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC018882|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U81232|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF153978|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK310076|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AB208808|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AY358879|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ893000|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ896755|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373877|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373878|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##CR456909|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC087840|HES5|388585|hairy and enhancer of split 5 (Drosophila)##DQ272660|HES5|388585|hairy and enhancer of split 5 (Drosophila)##NM_001010926|HES5|388585|hairy and enhancer of split 5 (Drosophila)##AL442072|PANK4|55229|pantothenate kinase 4##BC043496|PANK4|55229|pantothenate kinase 4##AK001644|PANK4|55229|pantothenate kinase 4##AK223546|PANK4|55229|pantothenate kinase 4##AK303127|PANK4|55229|pantothenate kinase 4##AK309860|PANK4|55229|pantothenate kinase 4##NM_018216|PANK4|55229|pantothenate kinase 4##AK295301|PANK4|55229|pantothenate kinase 4##NM_001195736|FAM213B|127281|family with sequence similarity 213, member B##NM_001195737|FAM213B|127281|family with sequence similarity 213, member B##NM_001195738|FAM213B|127281|family with sequence similarity 213, member B##NM_001195740|FAM213B|127281|family with sequence similarity 213, member B##NM_001195741|FAM213B|127281|family with sequence similarity 213, member B##NM_152371|FAM213B|127281|family with sequence similarity 213, member B##AK303504|FAM213B|127281|family with sequence similarity 213, member B##AK291908|FAM213B|127281|family with sequence similarity 213, member B##AK298926|FAM213B|127281|family with sequence similarity 213, member B##AK075273|FAM213B|127281|family with sequence similarity 213, member B##AF425266|FAM213B|127281|family with sequence similarity 213, member B##BC022547|FAM213B|127281|family with sequence similarity 213, member B##AK057027|FAM213B|127281|family with sequence similarity 213, member B##AK308034|FAM213B|127281|family with sequence similarity 213, member B##AK316243|FAM213B|127281|family with sequence similarity 213, member B##AK094901|FAM213B|127281|family with sequence similarity 213, member B##AK093058|MMEL1|79258|membrane metallo-endopeptidase-like 1##NM_033467|MMEL1|79258|membrane metallo-endopeptidase-like 1	1.729481	0.0	denovo_WM_7:-17:0.514	denovo_WM_7:-32:0.220	denovo_WM_7:-33:0.240	denovo_WM_7:-34:0.248
chr11	77789692	77789872	reg1004041.p1	8.082	+	TSC_hg19_v1_chr11_+_77774906 AK311975 NM_003251 BC031989 EU447014	-14869	+	BC001062 BC001929 NM_023930	-55480	-	BC009995 TSC_hg19_v1_chr11_-_77705714 AK290866 BC015664 NM_033547	-84067	-	CR533448 AB528753 AM392713 TSC_hg19_v1_chr11_-_77790909 AK022785 AF087659 AF369951 AK098173 AL050278 AF369952 AK023013 AF070652 BC007323	1092	-	AF087899 NM_001203260 NM_001203261 NM_001203262 NM_001204054 NM_001204055 NM_004549	1482	-	EU831448 CU674570 AK075184 TSC_hg19_v1_chr11_-_77850658 AJ224875 AK075194	60863	-	AK311975|THRSP|7069|thyroid hormone responsive##NM_003251|THRSP|7069|thyroid hormone responsive##BC031989|THRSP|7069|thyroid hormone responsive##EU447014|THRSP|7069|thyroid hormone responsive##BC001062|KCTD14|65987|potassium channel tetramerisation domain containing 14##BC001929|KCTD14|65987|potassium channel tetramerisation domain containing 14##NM_023930|KCTD14|65987|potassium channel tetramerisation domain containing 14##BC009995|INTS4|92105|integrator complex subunit 4##AK290866|INTS4|92105|integrator complex subunit 4##BC015664|INTS4|92105|integrator complex subunit 4##NM_033547|INTS4|92105|integrator complex subunit 4##CR533448|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AM392713|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK022785|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF087659|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369951|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK098173|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AL050278|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369952|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK023013|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF070652|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##BC007323|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF087899|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##NM_001203260|NDUFC2-KCTD14|100532726|NDUFC2-KCTD14 readthrough##NM_001203261|NDUFC2-KCTD14|100532726|NDUFC2-KCTD14 readthrough##NM_001203262|NDUFC2-KCTD14|100532726|NDUFC2-KCTD14 readthrough##NM_001204054|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##NM_001204055|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##NM_004549|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##EU831448|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AK075184|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AJ224875|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AK075194|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)	0.997234	0.0	denovo_WM_7:0:0.841
chr12	48262478	48262658	reg1003974.p2	8.082	+	AB489177 AY302468 TSC_hg19_v1_chr12_-_48213687 AY321367 BC064840 AK303481 AK299292 AK225910 NM_001098416 NM_015401	-48904	-	TSC_hg19_v1_chr12_+_48167020 NM_017842 AK000496 BC065033 BC026344 AK294075 CU688010 BC011823	-95534	+	AK092448 NM_001098531	-109694	-	TSC_hg19_v1_chr12_-_48298778 J03258 BC060832 BC033465 AK225844 AK299446 AK312267 NM_000376 NM_001017535 NM_001017536	36233	-	TSC_hg19_v1_chr12_+_48357345 NM_001143841 NM_001143842 NM_001143843 NM_024056	94770	+	TSC_hg19_v1_chr12_+_48357387 AK310035 AK313698 AK299154 BC107792	94852	+	AY302468|HDAC7|51564|histone deacetylase 7##AY321367|HDAC7|51564|histone deacetylase 7##BC064840|HDAC7|51564|histone deacetylase 7##AK303481|HDAC7|51564|histone deacetylase 7##AK299292|HDAC7|51564|histone deacetylase 7##AK225910|HDAC7|51564|histone deacetylase 7##NM_001098416|HDAC7|51564|histone deacetylase 7##NM_015401|HDAC7|51564|histone deacetylase 7##NM_017842|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##AK000496|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##BC065033|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##BC026344|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##AK294075|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##BC011823|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##AK092448|RAPGEF3|10411|Rap guanine nucleotide exchange factor (GEF) 3##NM_001098531|RAPGEF3|10411|Rap guanine nucleotide exchange factor (GEF) 3##J03258|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##BC060832|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##BC033465|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##AK225844|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##AK299446|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##AK312267|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_000376|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_001017535|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_001017536|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_001143841|TMEM106C|79022|transmembrane protein 106C##NM_001143842|TMEM106C|79022|transmembrane protein 106C##NM_001143843|TMEM106C|79022|transmembrane protein 106C##NM_024056|TMEM106C|79022|transmembrane protein 106C##AK310035|TMEM106C|79022|transmembrane protein 106C##AK313698|TMEM106C|79022|transmembrane protein 106C##AK299154|TMEM106C|79022|transmembrane protein 106C##BC107792|TMEM106C|79022|transmembrane protein 106C	0.968635	0.0	denovo_WM_7:-12:0.885
chr13	28029574	28029754	reg1004130.p2	8.082	+	AF265440 TSC_hg19_v1_chr13_-_28024702 BC046166 NM_001166263 NM_152912	-4942	-	TSC_hg19_v1_chr13_-_28024327 BC039599 NM_001166262 NM_001166261	-5355	-	BC143711 D32257 NM_002097 TSC_hg19_v1_chr13_+_27998761 AB590496 U14134 U20272	-30893	+	BC036755 TSC_hg19_v1_chr13_-_28194667	164940	-	TSC_hg19_v1_chr13_-_28194723 AK313394 NM_153371	165063	-	TSC_hg19_v1_chr13_+_28194948 NM_001206559 AK307356	165301	+	BC046166|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166263|MTIF3|219402|mitochondrial translational initiation factor 3##NM_152912|MTIF3|219402|mitochondrial translational initiation factor 3##BC039599|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166262|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166261|MTIF3|219402|mitochondrial translational initiation factor 3##BC143711|GTF3A|2971|general transcription factor IIIA##D32257|GTF3A|2971|general transcription factor IIIA##NM_002097|GTF3A|2971|general transcription factor IIIA##U14134|GTF3A|2971|general transcription factor IIIA##U20272|GTF3A|2971|general transcription factor IIIA##BC036755|LNX2|222484|ligand of numb-protein X 2##AK313394|LNX2|222484|ligand of numb-protein X 2##NM_153371|LNX2|222484|ligand of numb-protein X 2##NM_001206559|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##AK307356|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa	0.993059	0.0	denovo_WM_7:12:0.779
chr4	153693454	153693564	reg1003365.p1	8.081	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	-92309	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-236076	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-237215	-	BC037869 NM_145720	7394	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	7512	+	TSC_hg19_v1_chr4_+_153701117 AK290472 U52521 BC103759 BC105114 BC105116 BC143675 BC143676 AK096509	7618	+	BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK290472|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##U52521|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC103759|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105114|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105116|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143675|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143676|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK096509|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	0.145974	0.0	
chr3	101757095	101757275	reg1000999.p1	8.079	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-188811	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-210225	+	AK289689 NM_001134456	-258900	+	AY090780 NM_175056 BC143817	396682	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3328395	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3328637	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	0.996721	0.0	denovo_WM_7:-20:0.978
chr2	46769243	46769423	reg1003337.p1	8.076	+	BC034808 NM_080653	-22238	-	NM_001145051	-62630	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	-244358	+	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	516	+	TSC_hg19_v1_chr2_+_46769905 BC056154 BC070485 BC065291 BC093805 BC101806 AF498976 M31470 AB528045	705	+	BC010864 D13435 TSC_hg19_v1_chr2_-_46844167 BC039303	74829	-	BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q##BC056154|RHOQ|23433|ras homolog gene family, member Q##BC070485|RHOQ|23433|ras homolog gene family, member Q##BC065291|RHOQ|23433|ras homolog gene family, member Q##BC093805|RHOQ|23433|ras homolog gene family, member Q##BC101806|RHOQ|23433|ras homolog gene family, member Q##AF498976|RHOQ|23433|ras homolog gene family, member Q##M31470|RHOQ|23433|ras homolog gene family, member Q##D13435|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F	0.995703	0.0	
chr14	25351619	25351716	reg1002642.p1	8.075	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-248249	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-272806	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-306221	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	167571	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1715321	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3884561	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	1.990276	0.0	denovo_WM_7:-53:0.235	denovo_WM_7:-54:0.201	denovo_WM_7:-73:0.209	denovo_WM_7:-74:0.242
chr5	37379184	37379341	reg1003270.p1	8.075	+	TSC_hg19_v1_chr5_-_37371206 AK297143	-8048	-	AK315028 TSC_hg19_v1_chr5_-_37371193 BC039257 NM_153485	-8073	-	AJ007558 CU691696 TSC_hg19_v1_chr5_-_37371171	-8135	-	TSC_hg19_v1_chr5_+_37379386 AK310901 AK291179 BX537655	123	+	TSC_hg19_v1_chr5_+_37379419 AL512685 BC009648 NM_018034 BC025315 AK001095	168	+	AJ001899 NM_199231	456330	-	AK297143|NUP155|9631|nucleoporin 155kDa##AK315028|NUP155|9631|nucleoporin 155kDa##BC039257|NUP155|9631|nucleoporin 155kDa##NM_153485|NUP155|9631|nucleoporin 155kDa##AJ007558|NUP155|9631|nucleoporin 155kDa##AK310901|WDR70|55100|WD repeat domain 70##AK291179|WDR70|55100|WD repeat domain 70##BX537655|WDR70|55100|WD repeat domain 70##AL512685|WDR70|55100|WD repeat domain 70##BC009648|WDR70|55100|WD repeat domain 70##NM_018034|WDR70|55100|WD repeat domain 70##BC025315|WDR70|55100|WD repeat domain 70##AK001095|WDR70|55100|WD repeat domain 70##AJ001899|GDNF|2668|glial cell derived neurotrophic factor##NM_199231|GDNF|2668|glial cell derived neurotrophic factor	0.998688	0.0	
chr5	49736348	49736524	reg1003103.p1	8.075	+	AF488549 NM_021072	-4040217	-	AF064876 TSC_hg19_v1_chr5_-_45695947	-4040545	-	TSC_hg19_v1_chr5_+_44809056 AF146192 AL355715 NM_016640 AK222704 BC007735 AK222894 AL136706 AK074777 CU675783 BC002460	-4927409	+	AK300860 TSC_hg19_v1_chr5_-_49737200 BC059398	763	-	TSC_hg19_v1_chr5_-_49737229 NM_198449	807	-	AK298680 AK314466 BC105789 NM_001178055	225296	+	AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF064876|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF146192|MRPS30|10884|mitochondrial ribosomal protein S30##AL355715|MRPS30|10884|mitochondrial ribosomal protein S30##NM_016640|MRPS30|10884|mitochondrial ribosomal protein S30##AK222704|MRPS30|10884|mitochondrial ribosomal protein S30##BC007735|MRPS30|10884|mitochondrial ribosomal protein S30##AK222894|MRPS30|10884|mitochondrial ribosomal protein S30##AL136706|MRPS30|10884|mitochondrial ribosomal protein S30##AK074777|MRPS30|10884|mitochondrial ribosomal protein S30##BC002460|MRPS30|10884|mitochondrial ribosomal protein S30##AK300860|EMB|133418|embigin##BC059398|EMB|133418|embigin##NM_198449|EMB|133418|embigin##AK298680|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK314466|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##BC105789|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_001178055|PARP8|79668|poly (ADP-ribose) polymerase family, member 8	1.675167	0.0	denovo_WM_7:-47:0.561	denovo_WM_7:-62:0.549
chr11	60115008	60115117	reg1003207.p2	8.073	+	BC101783 AF333758 AF354931 BC069322 NM_139249 GQ129453 GQ129454 AF354933 BC034588 AF354932	-12680	+	NM_001243266 NM_024021 NM_148975 AK292089 AK075081 TSC_hg19_v1_chr11_+_60048138 BC020648 CU676600 DQ891395 DQ894573 AB022821 AK314033 AB013102	-66969	+	AK291870 NM_001247999 NM_152852	-162924	-	AK075106 NM_021201 NM_206938 NM_206939 NM_206940 AK297027 TSC_hg19_v1_chr11_+_60146004 BC043485 AF309653 AK309884	30925	+	TSC_hg19_v1_chr11_+_60146063 BC020673 AF237916 AF201951 AF350501	30997	+	NM_001079692 NM_032597	48424	+	BC101783|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF333758|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354931|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC069322|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##NM_139249|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129453|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129454|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354933|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC034588|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354932|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##NM_001243266|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_024021|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_148975|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK292089|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK075081|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##BC020648|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ891395|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ894573|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB022821|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK314033|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB013102|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK291870|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_001247999|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_152852|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK075106|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_021201|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206938|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206939|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206940|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK297027|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF309653|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK309884|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##BC020673|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF237916|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF201951|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF350501|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_001079692|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14##NM_032597|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14	0.999925	0.0	denovo_WM_7:0:0.644	denovo_WM_7:-1:0.250
chr3	100035578	100035697	reg1003591.p1	8.073	+	NM_001199198 NM_018309 TSC_hg19_v1_chr3_+_99979835 AK001908 AB449910 BC020955 BX648032	-55860	+	TSC_hg19_v1_chr3_+_99898312 AK055026	-137276	+	AK300704 NM_001167924	-201864	+	TSC_hg19_v1_chr3_+_100053600 NM_020202 AF260334 BC107890 AK225979 AK294010 AK295835 BC020620 AF284574 AK313704	17970	+	TSC_hg19_v1_chr3_-_100119707 DQ896424 CU688068	84114	-	AB018262 BC003633 TSC_hg19_v1_chr3_-_100119948	84291	-	NM_001199198|TBC1D23|55773|TBC1 domain family, member 23##NM_018309|TBC1D23|55773|TBC1 domain family, member 23##AK001908|TBC1D23|55773|TBC1 domain family, member 23##AB449910|TBC1D23|55773|TBC1 domain family, member 23##BC020955|TBC1D23|55773|TBC1 domain family, member 23##BX648032|TBC1D23|55773|TBC1 domain family, member 23##AK300704|C3orf26|84319|chromosome 3 open reading frame 26##NM_001167924|C3orf26|84319|chromosome 3 open reading frame 26##NM_020202|NIT2|56954|nitrilase family, member 2##AF260334|NIT2|56954|nitrilase family, member 2##BC107890|NIT2|56954|nitrilase family, member 2##AK225979|NIT2|56954|nitrilase family, member 2##AK294010|NIT2|56954|nitrilase family, member 2##BC020620|NIT2|56954|nitrilase family, member 2##AF284574|NIT2|56954|nitrilase family, member 2##AK313704|NIT2|56954|nitrilase family, member 2##DQ896424|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AB018262|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC003633|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)	0.0	0.668954	CTCF.p2:-46:0.669
chr3	194130385	194130562	reg1004321.p1	8.073	+	NM_004488	-10479	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	-40006	-	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	-58399	-	NM_024524	58494	-	TSC_hg19_v1_chr3_+_194207865 AK091527	77329	+	TSC_hg19_v1_chr3_+_194304750 AK124168	174260	+	NM_004488|GP5|2814|glycoprotein V (platelet)##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_024524|ATP13A3|79572|ATPase type 13A3##AK091527|FLJ34208|401106|uncharacterized LOC401106	1.019584	0.0	
chr6	132686931	132687055	reg1003807.p1	8.073	+	BT019794 BT019795 CR541734 CR541759 AB463538 AY550024 AY395801 M92934 X78947 BC087839 TSC_hg19_v1_chr6_-_132272513 AK125220 AK290884 AK315207 AK092280 NM_001901	-414579	-	TSC_hg19_v1_chr6_+_132129249 BC033008 AK314870	-557732	+	TSC_hg19_v1_chr6_+_132129157 NM_006208 BC059375 D12485 M57736	-557832	+	CU676314 DQ892164 DQ895358 TSC_hg19_v1_chr6_-_132722615 AY359094 BC018756 NM_015529	35623	-	U77942 TSC_hg19_v1_chr6_-_132834222 BC011975 AK294911 AK301464 NM_003569	147257	-	BC069083 NM_175057 AY183469	172434	+	BT019794|CTGF|1490|connective tissue growth factor##BT019795|CTGF|1490|connective tissue growth factor##CR541734|CTGF|1490|connective tissue growth factor##CR541759|CTGF|1490|connective tissue growth factor##AY550024|CTGF|1490|connective tissue growth factor##AY395801|CTGF|1490|connective tissue growth factor##M92934|CTGF|1490|connective tissue growth factor##X78947|CTGF|1490|connective tissue growth factor##BC087839|CTGF|1490|connective tissue growth factor##AK125220|CTGF|1490|connective tissue growth factor##AK290884|CTGF|1490|connective tissue growth factor##AK315207|CTGF|1490|connective tissue growth factor##AK092280|CTGF|1490|connective tissue growth factor##NM_001901|CTGF|1490|connective tissue growth factor##BC033008|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##AK314870|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##NM_006208|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##BC059375|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##D12485|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##M57736|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##DQ892164|MOXD1|26002|monooxygenase, DBH-like 1##DQ895358|MOXD1|26002|monooxygenase, DBH-like 1##AY359094|MOXD1|26002|monooxygenase, DBH-like 1##BC018756|MOXD1|26002|monooxygenase, DBH-like 1##NM_015529|MOXD1|26002|monooxygenase, DBH-like 1##U77942|STX7|8417|syntaxin 7##BC011975|STX7|8417|syntaxin 7##AK294911|STX7|8417|syntaxin 7##AK301464|STX7|8417|syntaxin 7##NM_003569|STX7|8417|syntaxin 7##BC069083|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##NM_175057|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##AY183469|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)	0.0	0.0	
chr9	132785425	132785581	reg1004200.p2	8.073	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-187738	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-187781	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-187819	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	19851	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	19985	-	BC039728 NM_001136557 NM_001136558 NM_020960	30481	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.991263	0.0	denovo_WM_7:-13:0.890
chr1	247553797	247553977	reg1003400.p2	8.069	+	TSC_hg19_v1_chr1_-_247494994 BC007263 NM_032752	-58870	-	BC126341 BC126367 NM_173858	-134564	+	BC032514 BC096349 BC096350 BC096351 BC099661 BC013605 AK054647 NM_001243740 NM_003431	-218603	-	AK314998 NM_001079821 NM_001127461 TSC_hg19_v1_chr1_+_247579474 AB208891	25582	+	AF410477 AF427617 NM_001127462 NM_001243133 NM_004895 NM_183395	27463	+	NM_001004492 BC137181 BC137205	61408	-	BC007263|ZNF496|84838|zinc finger protein 496##NM_032752|ZNF496|84838|zinc finger protein 496##BC126341|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC126367|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##NM_173858|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC032514|ZNF124|7678|zinc finger protein 124##BC096349|ZNF124|7678|zinc finger protein 124##BC096350|ZNF124|7678|zinc finger protein 124##BC096351|ZNF124|7678|zinc finger protein 124##BC099661|ZNF124|7678|zinc finger protein 124##BC013605|ZNF124|7678|zinc finger protein 124##AK054647|ZNF124|7678|zinc finger protein 124##NM_001243740|ZNF124|7678|zinc finger protein 124##NM_003431|ZNF124|7678|zinc finger protein 124##AK314998|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001079821|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127461|NLRP3|114548|NLR family, pyrin domain containing 3##AB208891|NLRP3|114548|NLR family, pyrin domain containing 3##AF410477|NLRP3|114548|NLR family, pyrin domain containing 3##AF427617|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127462|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001243133|NLRP3|114548|NLR family, pyrin domain containing 3##NM_004895|NLRP3|114548|NLR family, pyrin domain containing 3##NM_183395|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001004492|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137181|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137205|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11	1.010953	0.0	denovo_WM_7:-2:0.718
chr16	70687717	70687834	reg1003719.p2	8.069	+	NM_001172772	-29881	+	NM_001172771 NM_152456	-73978	+	TSC_hg19_v1_chr16_+_70557732 D87686 BC068974	-130027	+	BC002770 TSC_hg19_v1_chr16_-_70713956	26168	-	AB115770 TSC_hg19_v1_chr16_-_70719700	31923	-	TSC_hg19_v1_chr16_-_70719957 NM_138383	32155	-	NM_001172772|IL34|146433|interleukin 34##NM_001172771|IL34|146433|interleukin 34##NM_152456|IL34|146433|interleukin 34##D87686|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC068974|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC002770|MTSS1L|92154|metastasis suppressor 1-like##AB115770|MTSS1L|92154|metastasis suppressor 1-like##NM_138383|MTSS1L|92154|metastasis suppressor 1-like	0.0	0.338572	CTCF.p2:28:0.339
chr19	50015139	50015288	reg1004900.p1	8.069	+	TSC_hg19_v1_chr19_+_49999690 X06617 BC016378 BC070224 DQ893225 DQ896555	-15504	+	TSC_hg19_v1_chr19_+_49999686 AK311809 D28407	-15529	+	NM_001015 TSC_hg19_v1_chr19_+_49999653	-15566	+	NM_001136019 BC091487	364	+	TSC_hg19_v1_chr19_+_50015917 AK075532 BX647163	681	+	NM_004107 TSC_hg19_v1_chr19_+_50016469 AK074734	1239	+	X06617|RPS11|6205|ribosomal protein S11##BC016378|RPS11|6205|ribosomal protein S11##BC070224|RPS11|6205|ribosomal protein S11##DQ893225|RPS11|6205|ribosomal protein S11##DQ896555|RPS11|6205|ribosomal protein S11##AK311809|RPS11|6205|ribosomal protein S11##NM_001015|RPS11|6205|ribosomal protein S11##NM_001136019|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC091487|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##AK075532|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BX647163|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##NM_004107|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##AK074734|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha	0.996687	0.0	denovo_WM_7:32:0.985
chr6	33292116	33292269	reg1004407.p1	8.068	+	BC109073 BC109074 TSC_hg19_v1_chr6_-_33290737 AK309612 AB015051 AF050179 BC073776 AF039136 AK303767 AK313034 AK303854 AK223404 AK292187 NM_001141969 NM_001141970 NM_001350	-1457	-	AK315747 NM_001145338	-6474	-	BC018541 NM_005453 TSC_hg19_v1_chr6_-_33285522	-6677	-	NM_002263	67120	+	TSC_hg19_v1_chr6_+_33359599 AJ010479	67395	+	BC000712 TSC_hg19_v1_chr6_+_33359612 BC073878	67419	+	BC109073|DAXX|1616|death-domain associated protein##BC109074|DAXX|1616|death-domain associated protein##AK309612|DAXX|1616|death-domain associated protein##AF050179|DAXX|1616|death-domain associated protein##BC073776|DAXX|1616|death-domain associated protein##AF039136|DAXX|1616|death-domain associated protein##AK303767|DAXX|1616|death-domain associated protein##AK313034|DAXX|1616|death-domain associated protein##AK303854|DAXX|1616|death-domain associated protein##AK223404|DAXX|1616|death-domain associated protein##AK292187|DAXX|1616|death-domain associated protein##NM_001141969|DAXX|1616|death-domain associated protein##NM_001141970|DAXX|1616|death-domain associated protein##NM_001350|DAXX|1616|death-domain associated protein##AK315747|ZBTB22|9278|zinc finger and BTB domain containing 22##NM_001145338|ZBTB22|9278|zinc finger and BTB domain containing 22##BC018541|ZBTB22|9278|zinc finger and BTB domain containing 22##NM_005453|ZBTB22|9278|zinc finger and BTB domain containing 22##NM_002263|KIFC1|3833|kinesin family member C1##AJ010479|KIFC1|3833|kinesin family member C1##BC000712|KIFC1|3833|kinesin family member C1##BC073878|KIFC1|3833|kinesin family member C1	0.993248	0.0	denovo_WM_7:-15:0.480
chr3	4872655	4872794	reg1003855.p1	8.067	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-337528	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-337596	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-337693	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	148392	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	148457	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	148630	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.169511	0.0	
chr16	21512551	21512680	reg1003415.p1	8.066	+	BC036263 NM_130464	-75958	-	BX648477 NM_001014444 NM_001888	-198228	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-222967	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	19137	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	98275	+	AF151839 TSC_hg19_v1_chr16_+_21611174	98539	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	0.0	0.0	
chr20	46189938	46190118	reg1003754.p1	8.066	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-59344	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-59406	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-204540	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	224724	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	225290	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1254258	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1.998608	0.0	denovo_WM_7:0:0.227	denovo_WM_7:0:0.740	denovo_WM_7:23:0.425	denovo_WM_7:24:0.425
chr16	14591958	14592114	reg1004515.p1	8.064	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-297838	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-311518	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-426950	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	131992	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	132097	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	134703	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	0.994342	0.0	
chr8	138946730	138946884	reg1003821.p2	8.064	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-2476606	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-2477149	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-3221533	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	562299	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	979437	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	1768475	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.199098	0.904005	CTCF.p2:89:0.904
chr6	150957357	150957510	reg1003859.p1	8.062	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-36413	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-267275	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-493192	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	229399	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	229488	+	TSC_hg19_v1_chr6_+_151187064 AL117452	229668	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.0	0.0	
chr10	105743355	105743487	reg1003678.p1	8.059	+	AF273048 NM_014720 BC111565 BC008697	-15934	+	TSC_hg19_v1_chr10_+_105726941 BC047885 BC064804 BC047762 BC036736 D86959	-16457	+	TSC_hg19_v1_chr10_+_105726926 AK307389	-16535	+	AK300117 TSC_hg19_v1_chr10_-_105845560 M91669 AK300226 AK309940	102148	-	BC004478 D63465 TSC_hg19_v1_chr10_-_105845639 NM_000494	102208	-	NM_145247 BC140835 NM_001002759 BC043256 AK291184	138488	+	AF273048|SLK|9748|STE20-like kinase##NM_014720|SLK|9748|STE20-like kinase##BC111565|SLK|9748|STE20-like kinase##BC008697|SLK|9748|STE20-like kinase##BC047885|SLK|9748|STE20-like kinase##BC064804|SLK|9748|STE20-like kinase##BC047762|SLK|9748|STE20-like kinase##BC036736|SLK|9748|STE20-like kinase##D86959|SLK|9748|STE20-like kinase##AK307389|SLK|9748|STE20-like kinase##M91669|COL17A1|1308|collagen, type XVII, alpha 1##AK309940|COL17A1|1308|collagen, type XVII, alpha 1##BC004478|COL17A1|1308|collagen, type XVII, alpha 1##D63465|COL17A1|1308|collagen, type XVII, alpha 1##NM_000494|COL17A1|1308|collagen, type XVII, alpha 1##NM_145247|SFR1|119392|SWI5-dependent recombination repair 1##BC140835|SFR1|119392|SWI5-dependent recombination repair 1##NM_001002759|SFR1|119392|SWI5-dependent recombination repair 1##BC043256|SFR1|119392|SWI5-dependent recombination repair 1##AK291184|SFR1|119392|SWI5-dependent recombination repair 1	0.983803	0.0	denovo_WM_7:11:0.808
chr17	41387269	41387417	reg1003537.p2	8.057	+	TSC_hg19_v1_chr17_+_41363905 AK056132 AK290387 AK299974 AK301571 NM_145041	-23464	+	TSC_hg19_v1_chr17_+_41323230 AK299328 AK290005 AK297425 BC012591 X76952 NM_005899 BC009808 AY450308	-64121	+	TSC_hg19_v1_chr17_+_41322538 D30756 NM_031862 AF227189 NM_031858	-64850	+	AL832479 TSC_hg19_v1_chr17_-_41465694 AK123585 AK311685	78347	-	TSC_hg19_v1_chr17_+_41476360 NM_001661 AK314951 BC000043 AB060692 L38490	89024	+	AK294046 TSC_hg19_v1_chr17_+_41561351 BC020697 AK303319 D50487 NM_004941 AK291664	173954	+	AK056132|TMEM106A|113277|transmembrane protein 106A##AK290387|TMEM106A|113277|transmembrane protein 106A##AK299974|TMEM106A|113277|transmembrane protein 106A##AK301571|TMEM106A|113277|transmembrane protein 106A##NM_145041|TMEM106A|113277|transmembrane protein 106A##AK299328|NBR1|4077|neighbor of BRCA1 gene 1##AK290005|NBR1|4077|neighbor of BRCA1 gene 1##AK297425|NBR1|4077|neighbor of BRCA1 gene 1##X76952|NBR1|4077|neighbor of BRCA1 gene 1##NM_005899|NBR1|4077|neighbor of BRCA1 gene 1##BC009808|NBR1|4077|neighbor of BRCA1 gene 1##AY450308|NBR1|4077|neighbor of BRCA1 gene 1##D30756|NBR1|4077|neighbor of BRCA1 gene 1##NM_031862|NBR1|4077|neighbor of BRCA1 gene 1##AF227189|NBR1|4077|neighbor of BRCA1 gene 1##NM_031858|NBR1|4077|neighbor of BRCA1 gene 1##AL832479|LOC100130581|100130581|uncharacterized LOC100130581##AK123585|LOC100130581|100130581|uncharacterized LOC100130581##AK311685|LOC100130581|100130581|uncharacterized LOC100130581##NM_001661|ARL4D|379|ADP-ribosylation factor-like 4D##AK314951|ARL4D|379|ADP-ribosylation factor-like 4D##BC000043|ARL4D|379|ADP-ribosylation factor-like 4D##AB060692|ARL4D|379|ADP-ribosylation factor-like 4D##L38490|ARL4D|379|ADP-ribosylation factor-like 4D##AK294046|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##BC020697|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK303319|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##D50487|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##NM_004941|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK291664|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8	0.995025	0.0	
chr13	107026710	107026819	reg1002969.p2	8.056	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-908173	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	-908460	+	NM_000452 U10417	-3307569	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	160585	-	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	193721	-	NM_001080396	1492695	-	NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A	0.992077	0.0	denovo_WM_7:12:0.818
chr4	146970952	146971103	reg1003726.p2	8.056	+	BC033879 TSC_hg19_v1_chr4_-_146859976	-111059	-	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	-111350	-	NM_001080531	-369672	+	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	125840	+	AM392861 BC146684 CU687734 DQ122860 DQ122861 DQ871036 EU831657 EU831663 EU831740 EU831744 CR936751 BC120970 BC120971 BC127626 BC127627 BC148252 AK291046 BC063471 AL136728 TSC_hg19_v1_chr4_-_147443093 BC023288 AY346324 BC150308 CR933647 NM_001029998 NM_032128	471969	-	TSC_hg19_v1_chr4_+_147560044 AK314982 NM_004575 U06233 BC136344 BC136345	589064	+	AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##NM_001080531|C4orf51|646603|chromosome 4 open reading frame 51##NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AM392861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC146684|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122860|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ871036|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831657|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831663|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831740|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831744|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR936751|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120970|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120971|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127626|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127627|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC148252|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK291046|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC063471|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AL136728|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC023288|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AY346324|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC150308|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR933647|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_001029998|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_032128|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK314982|POU4F2|5458|POU class 4 homeobox 2##NM_004575|POU4F2|5458|POU class 4 homeobox 2##U06233|POU4F2|5458|POU class 4 homeobox 2##BC136344|POU4F2|5458|POU class 4 homeobox 2##BC136345|POU4F2|5458|POU class 4 homeobox 2	1.965045	0.0	denovo_WM_7:-47:0.790	denovo_WM_7:-63:0.456	denovo_WM_7:-64:0.456
chr7	122350086	122350246	reg1003603.p1	8.055	+	AK058116 AK098654 BC029264 NM_198085	-7174	-	BC022038 AF447589 NM_139175 AK098524	-10969	-	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-405577	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	176332	-	TSC_hg19_v1_chr7_-_122526793 NM_001009571 NM_001167940 NM_017954	176630	-	BC095524 NM_016945	285587	-	AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2##NM_001009571|CADPS2|93664|Ca++-dependent secretion activator 2##NM_001167940|CADPS2|93664|Ca++-dependent secretion activator 2##NM_017954|CADPS2|93664|Ca++-dependent secretion activator 2##BC095524|TAS2R16|50833|taste receptor, type 2, member 16##NM_016945|TAS2R16|50833|taste receptor, type 2, member 16	1.844345	0.0	denovo_WM_7:-21:0.255	denovo_WM_7:-22:0.541	denovo_WM_7:-53:0.456	denovo_WM_7:-54:0.456
chr14	23272589	23272697	reg1002266.p1	8.054	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-36798	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-205454	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-214509	-	TSC_hg19_v1_chr14_-_23284568 AK025377	11936	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	11989	-	AB020532 BX161519 NM_001126105	12415	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.993417	0.0	denovo_WM_7:-3:0.303	denovo_WM_7:-8:0.509
chr1	65885201	65885378	reg1003567.p2	8.054	+	AK296408 NM_014787 AB007942	-154860	+	TSC_hg19_v1_chr1_+_65720144 AK123450 BC051722	-165170	+	TSC_hg19_v1_chr1_+_65613971 BC040224 BC136886 BC136887 BC148270 CR456830 CU688216 DQ892294 DQ895494	-271259	+	BC140007 NM_001198683 NM_017526 TSC_hg19_v1_chr1_+_65886266	913	+	TSC_hg19_v1_chr1_+_65886400 NM_001003679 NM_001003680 NM_002303 U43168 U66495 U66496 Y12670 AK074841 AK290208 BC056250 AK094801 AK309370 NM_001198681 BC131779 EU832353 EU832438 CR541647 CR541737 U66497	1073	+	TSC_hg19_v1_chr1_+_65991358 BC031086 NM_001198687 NM_001198688 NM_001198689	106081	+	AK296408|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##NM_014787|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##AB007942|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##AK123450|LOC645195|645195|uncharacterized LOC645195##BC051722|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##BC040224|AK4|205|adenylate kinase 4##BC136886|AK4|205|adenylate kinase 4##BC136887|AK4|205|adenylate kinase 4##BC148270|AK4|205|adenylate kinase 4##CR456830|AK4|205|adenylate kinase 4##DQ892294|AK4|205|adenylate kinase 4##DQ895494|AK4|205|adenylate kinase 4##BC140007|LEPROT|54741|leptin receptor overlapping transcript##NM_001198683|LEPROT|54741|leptin receptor overlapping transcript##NM_017526|LEPROT|54741|leptin receptor overlapping transcript##NM_001003679|LEPR|3953|leptin receptor##NM_001003680|LEPR|3953|leptin receptor##NM_002303|LEPR|3953|leptin receptor##U43168|LEPR|3953|leptin receptor##U66495|LEPR|3953|leptin receptor##U66496|LEPR|3953|leptin receptor##Y12670|LEPROT|54741|leptin receptor overlapping transcript##AK074841|LEPROT|54741|leptin receptor overlapping transcript##AK290208|LEPR|3953|leptin receptor##BC056250|LEPROT|54741|leptin receptor overlapping transcript##AK094801|LEPROT|54741|leptin receptor overlapping transcript##AK309370|LEPROT|54741|leptin receptor overlapping transcript##NM_001198681|LEPROT|54741|leptin receptor overlapping transcript##BC131779|LEPR|3953|leptin receptor##EU832353|LEPROT|54741|leptin receptor overlapping transcript##EU832438|LEPROT|54741|leptin receptor overlapping transcript##CR541647|LEPROT|54741|leptin receptor overlapping transcript##CR541737|LEPROT|54741|leptin receptor overlapping transcript##U66497|LEPR|3953|leptin receptor##BC031086|LEPR|3953|leptin receptor##NM_001198687|LEPR|3953|leptin receptor##NM_001198688|LEPR|3953|leptin receptor##NM_001198689|LEPR|3953|leptin receptor	0.984116	0.0	denovo_WM_7:-29:0.215	denovo_WM_7:-32:0.468
chr12	110888613	110888793	reg1003452.p2	8.053	+	TSC_hg19_v1_chr12_-_110888163 AK311789	-534	-	TSC_hg19_v1_chr12_-_110888152 NM_005719	-549	-	TSC_hg19_v1_chr12_-_110888134 AK297309	-561	-	AM992619 AM992620 AY364262 CU678955 CU689082 AB528074 AM393009 AM393821 TSC_hg19_v1_chr12_-_110906038 AF117229	17327	-	TSC_hg19_v1_chr12_-_110906063 AK223209 AK314946 BC008416 BC031024 AY359078 BX537973 NM_001164373 NM_016301	17369	-	TSC_hg19_v1_chr12_+_110906228 AK296280 AK297684 NM_013300 AK225731 U79274 BC020967	17606	+	AK311789|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##NM_005719|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AK297309|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AM992619|GPN3|51184|GPN-loop GTPase 3##AM992620|GPN3|51184|GPN-loop GTPase 3##AY364262|GPN3|51184|GPN-loop GTPase 3##AM393009|GPN3|51184|GPN-loop GTPase 3##AM393821|GPN3|51184|GPN-loop GTPase 3##AF117229|GPN3|51184|GPN-loop GTPase 3##AK223209|GPN3|51184|GPN-loop GTPase 3##AK314946|GPN3|51184|GPN-loop GTPase 3##BC008416|GPN3|51184|GPN-loop GTPase 3##BC031024|GPN3|51184|GPN-loop GTPase 3##AY359078|GPN3|51184|GPN-loop GTPase 3##BX537973|GPN3|51184|GPN-loop GTPase 3##NM_001164373|GPN3|51184|GPN-loop GTPase 3##NM_016301|GPN3|51184|GPN-loop GTPase 3##AK296280|C12orf24|29902|chromosome 12 open reading frame 24##AK297684|C12orf24|29902|chromosome 12 open reading frame 24##NM_013300|C12orf24|29902|chromosome 12 open reading frame 24##AK225731|C12orf24|29902|chromosome 12 open reading frame 24##U79274|C12orf24|29902|chromosome 12 open reading frame 24##BC020967|C12orf24|29902|chromosome 12 open reading frame 24	1.990499	0.0	denovo_WM_7:-43:0.954	denovo_WM_7:-58:0.973
chrX	52950195	52950375	reg1000001.p2	8.053	+	AL834135 NM_001099684	-21877	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	-23894	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	-23941	+	AL834135 NM_001099684	35343	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	37377	-	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	74361	-	AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A	0.0	0.0	
chr13	41547691	41547838	reg1003649.p1	8.051	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	-51899	-	AF177333 TSC_hg19_v1_chr13_+_41363756	-183998	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-184080	+	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	8432	-	AK304289 BC010575 BC030507 NM_001145353	8624	-	TSC_hg19_v1_chr13_-_41593453 M82882	45679	-	AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##M82882|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.99045	0.0	denovo_WM_7:21:0.814
chr3	194409187	194409306	reg1004033.p1	8.050	+	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-1743	+	TSC_hg19_v1_chr3_+_194406619 NM_153690	-2623	+	NM_018385	-16041	-	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	582604	-	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	754456	-	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	860867	-	BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##NM_018385|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2	0.999653	0.0	denovo_WM_7:19:0.842
chr6	111266235	111266390	reg1000503.p2	8.049	+	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	-70290	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-129586	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-129798	-	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	13518	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	13646	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	36962	+	AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)	0.998647	0.0	denovo_WM_7:35:0.761
chr17	72404536	72404663	reg1004010.p1	8.048	+	BC143807 AB196530 AB528868 AY288421 NM_181790	-41005	+	NM_001080466	-46642	-	NM_153209 TSC_hg19_v1_chr17_+_72322355 BC067749 BC026362 BC110989 AK094619 BC143327 BC093631 BC104852	-82192	+	BC110848 BC004925 BC069202 NM_022036 BC125080 BC125081	23005	+	AK075397 AF207989 AK222909 TSC_hg19_v1_chr17_+_72428254 AK000249	23656	+	AJ276102 NM_018653	25236	+	BC143807|GPR142|350383|G protein-coupled receptor 142##AB196530|GPR142|350383|G protein-coupled receptor 142##AY288421|GPR142|350383|G protein-coupled receptor 142##NM_181790|GPR142|350383|G protein-coupled receptor 142##NM_001080466|BTBD17|388419|BTB (POZ) domain containing 17##NM_153209|KIF19|124602|kinesin family member 19##BC067749|KIF19|124602|kinesin family member 19##BC026362|KIF19|124602|kinesin family member 19##BC110989|KIF19|124602|kinesin family member 19##AK094619|KIF19|124602|kinesin family member 19##BC143327|KIF19|124602|kinesin family member 19##BC093631|KIF19|124602|kinesin family member 19##BC104852|KIF19|124602|kinesin family member 19##BC110848|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC004925|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC069202|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##NM_022036|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC125080|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC125081|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK075397|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AF207989|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK222909|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK000249|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AJ276102|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##NM_018653|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C	0.998549	0.0	denovo_WM_7:-44:0.533	denovo_WM_7:-45:0.206	denovo_WM_7:-47:0.206
chr2	3645226	3645367	reg1003891.p1	8.047	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-2727	+	X74803 TSC_hg19_v1_chr2_+_3627765	-17551	+	TSC_hg19_v1_chr2_+_3623128 BC071919 AB464168 DQ892985 DQ896234 M77233 AF085824	-22131	+	AK302299 NM_018436 BC029652	60501	+	U23752 AB028641 NM_003108 BC025789 AB464713	2187519	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	3360604	-	AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##X74803|RPS7|6201|ribosomal protein S7##BC071919|RPS7|6201|ribosomal protein S7##DQ892985|RPS7|6201|ribosomal protein S7##DQ896234|RPS7|6201|ribosomal protein S7##M77233|RPS7|6201|ribosomal protein S7##AF085824|RPS7|6201|ribosomal protein S7##AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	0.99571	0.0	denovo_WM_7:-25:0.927
chr15	69084407	69084532	reg1003880.p2	8.046	+	AK289678 NM_001190457	-160143	+	NM_001190456	-175591	+	TSC_hg19_v1_chr15_+_68871402 NM_006091	-213126	+	AB463390 AY349171 BC106719 BC125143 BT007436 DQ893294 DQ896729 U60823 TSC_hg19_v1_chr15_-_69113208 U73477 X75090 AK223280	28680	-	TSC_hg19_v1_chr15_-_69113235 BC007200 BC000608 AF025684 AK312703	28758	-	TSC_hg19_v1_chr15_-_69113264 NM_006305	28791	-	AK289678|CORO2B|10391|coronin, actin binding protein, 2B##NM_001190457|CORO2B|10391|coronin, actin binding protein, 2B##NM_001190456|CORO2B|10391|coronin, actin binding protein, 2B##NM_006091|CORO2B|10391|coronin, actin binding protein, 2B##AY349171|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC106719|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC125143|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BT007436|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##DQ893294|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##DQ896729|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##U60823|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##U73477|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##X75090|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AK223280|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC007200|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC000608|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AF025684|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AK312703|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##NM_006305|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	0.990113	0.0	denovo_WM_7:3:0.230	denovo_WM_7:5:0.719
chr10	100435737	100435885	reg1003477.p1	8.045	+	TSC_hg19_v1_chr10_-_100206705 NM_000195 NM_182639	-229100	-	TSC_hg19_v1_chr10_-_100206661 U65676 BC000175 AK295821 U96721	-229136	-	BC002514 TSC_hg19_v1_chr10_-_100206650	-229165	-	AJ299720 AK094037 BC112356 AF282885 AF282886 AF282887 AJ299719 AK314759 NM_001166244 NM_001166245 NM_001166246 NM_021828	559783	-	TSC_hg19_v1_chr10_+_101088794 NM_020348	653013	+	TSC_hg19_v1_chr10_+_101089114 AK308618	653315	+	NM_000195|HPS1|3257|Hermansky-Pudlak syndrome 1##NM_182639|HPS1|3257|Hermansky-Pudlak syndrome 1##U65676|HPS1|3257|Hermansky-Pudlak syndrome 1##BC000175|HPS1|3257|Hermansky-Pudlak syndrome 1##AK295821|HPS1|3257|Hermansky-Pudlak syndrome 1##U96721|HPS1|3257|Hermansky-Pudlak syndrome 1##BC002514|HPS1|3257|Hermansky-Pudlak syndrome 1##AJ299720|HPSE2|60495|heparanase 2##AK094037|HPSE2|60495|heparanase 2##BC112356|HPSE2|60495|heparanase 2##AF282885|HPSE2|60495|heparanase 2##AF282886|HPSE2|60495|heparanase 2##AF282887|HPSE2|60495|heparanase 2##AJ299719|HPSE2|60495|heparanase 2##AK314759|HPSE2|60495|heparanase 2##NM_001166244|HPSE2|60495|heparanase 2##NM_001166245|HPSE2|60495|heparanase 2##NM_001166246|HPSE2|60495|heparanase 2##NM_021828|HPSE2|60495|heparanase 2##NM_020348|CNNM1|26507|cyclin M1##AK308618|CNNM1|26507|cyclin M1	0.991632	0.0	denovo_WM_7:-10:0.921
chr15	85567715	85567871	reg1002981.p1	8.045	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-42467	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-42556	+	TSC_hg19_v1_chr15_+_85523735 BC060762 AK074280 NM_001243137	-44091	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	98525	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	356098	+	AF127481 NM_144767	652474	+	BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##BC060762|PDE8A|5151|phosphodiesterase 8A##AK074280|PDE8A|5151|phosphodiesterase 8A##NM_001243137|PDE8A|5151|phosphodiesterase 8A##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13	0.995387	0.0	denovo_WM_7:-5:0.595	denovo_WM_7:-7:0.347
chr4	56428189	56428313	reg1003845.p2	8.045	+	TSC_hg19_v1_chr4_-_56412988 BC126157 BC126159 AF011568 NM_004898 AK291708 AK223549	-15260	-	TSC_hg19_v1_chr4_+_56262123 BC107582 AK290663 AK295289 BC104978 BC104980 AF132746 AF183409	-166013	+	TSC_hg19_v1_chr4_+_56262094 NM_018475	-166176	+	BC034431 NM_152401	30127	-	DQ891295 DQ894479 BC012908 NM_006681 X76029 TSC_hg19_v1_chr4_-_56502465	74161	-	TSC_hg19_v1_chr4_+_56719840 BC094751 NM_001024924 NM_018261 NM_178237 AK001755 AK027413	291614	+	BC126157|CLOCK|9575|clock homolog (mouse)##BC126159|CLOCK|9575|clock homolog (mouse)##AF011568|CLOCK|9575|clock homolog (mouse)##NM_004898|CLOCK|9575|clock homolog (mouse)##AK291708|CLOCK|9575|clock homolog (mouse)##AK223549|CLOCK|9575|clock homolog (mouse)##BC107582|TMEM165|55858|transmembrane protein 165##AK290663|TMEM165|55858|transmembrane protein 165##AK295289|TMEM165|55858|transmembrane protein 165##BC104978|TMEM165|55858|transmembrane protein 165##BC104980|TMEM165|55858|transmembrane protein 165##AF132746|TMEM165|55858|transmembrane protein 165##AF183409|TMEM165|55858|transmembrane protein 165##NM_018475|TMEM165|55858|transmembrane protein 165##BC034431|PDCL2|132954|phosducin-like 2##NM_152401|PDCL2|132954|phosducin-like 2##DQ891295|NMU|10874|neuromedin U##DQ894479|NMU|10874|neuromedin U##BC012908|NMU|10874|neuromedin U##NM_006681|NMU|10874|neuromedin U##X76029|NMU|10874|neuromedin U##BC094751|EXOC1|55763|exocyst complex component 1##NM_001024924|EXOC1|55763|exocyst complex component 1##NM_018261|EXOC1|55763|exocyst complex component 1##NM_178237|EXOC1|55763|exocyst complex component 1##AK001755|EXOC1|55763|exocyst complex component 1##AK027413|EXOC1|55763|exocyst complex component 1	0.0	0.0	
chr20	3888185	3888337	reg1001977.p2	8.044	+	NM_153640 BC107724 BC065019	-17772	+	TSC_hg19_v1_chr20_+_3870042 AK310190 AK097796 BC142976 BC009421	-18205	+	TSC_hg19_v1_chr20_-_3869721 BC005095 BC012193	-18543	-	AL096778 NM_007219 BC039584 TSC_hg19_v1_chr20_-_3996221 BC000213 BC003141 NM_001134337 NM_001134338 BC032738	107904	-	TSC_hg19_v1_chr20_+_4129438 NM_175839 NM_175840 NM_175841 NM_175842	241174	+	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	241262	+	NM_153640|PANK2|80025|pantothenate kinase 2##BC107724|PANK2|80025|pantothenate kinase 2##BC065019|PANK2|80025|pantothenate kinase 2##AK310190|PANK2|80025|pantothenate kinase 2##AK097796|PANK2|80025|pantothenate kinase 2##BC142976|PANK2|80025|pantothenate kinase 2##BC009421|PANK2|80025|pantothenate kinase 2##AL096778|RNF24|11237|ring finger protein 24##NM_007219|RNF24|11237|ring finger protein 24##BC039584|RNF24|11237|ring finger protein 24##BC000213|RNF24|11237|ring finger protein 24##NM_001134337|RNF24|11237|ring finger protein 24##NM_001134338|RNF24|11237|ring finger protein 24##NM_175839|SMOX|54498|spermine oxidase##NM_175840|SMOX|54498|spermine oxidase##NM_175841|SMOX|54498|spermine oxidase##NM_175842|SMOX|54498|spermine oxidase##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase	0.0	0.0	
chr2	74198356	74198480	reg1003367.p1	8.044	+	TSC_hg19_v1_chr2_+_74154019 X97386	-44372	+	TSC_hg19_v1_chr2_+_74154006 BC024019 U41668 BC001121 BC015757	-44418	+	TSC_hg19_v1_chr2_+_74153968 NM_080916 NM_080918	-44468	+	NM_144993	75031	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	176600	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	176802	+	X97386|DGUOK|1716|deoxyguanosine kinase##BC024019|DGUOK|1716|deoxyguanosine kinase##U41668|DGUOK|1716|deoxyguanosine kinase##BC001121|DGUOK|1716|deoxyguanosine kinase##BC015757|DGUOK|1716|deoxyguanosine kinase##NM_080916|DGUOK|1716|deoxyguanosine kinase##NM_080918|DGUOK|1716|deoxyguanosine kinase##NM_144993|TET3|200424|tet methylcytosine dioxygenase 3##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)	0.809964	0.0	denovo_WM_7:59:0.766
chr10	93902858	93903028	reg1002985.p1	8.043	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-219251	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-219427	+	AK315427 BC025966 AK075410 NM_152429	-233723	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	100076	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	147893	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	148111	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.065143	0.0	
chr5	158202240	158202420	reg1003034.p2	8.043	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-916240	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1017950	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1031590	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	324127	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	324412	-	AK304228 NM_001199382	432318	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.024127	0.032956	
chr10	121916437	121916608	reg1003750.p1	8.042	+	NM_007190 TSC_hg19_v1_chr10_+_121652241 AB019435 AK021846 AK314592 AK001135 AK001135 AK301517 BC063800 BC063800 BC002540 AF116723 BX649119 BX649119 AB384691 CU687818 BT006755	-264333	+	AK023143 TSC_hg19_v1_chr10_-_121632359 BC004183 BC007219 NM_024834	-284182	-	TSC_hg19_v1_chr10_-_121602031 BC000935	-314459	-	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	300117	+	NM_018117 TSC_hg19_v1_chr10_+_122610771	694206	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	694373	+	NM_007190|SEC23IP|11196|SEC23 interacting protein##AB019435|SEC23IP|11196|SEC23 interacting protein##AK021846|SEC23IP|11196|SEC23 interacting protein##AK314592|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK301517|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC002540|SEC23IP|11196|SEC23 interacting protein##AF116723|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BT006755|SEC23IP|11196|SEC23 interacting protein##AK023143|MCMBP|79892|minichromosome maintenance complex binding protein##BC004183|MCMBP|79892|minichromosome maintenance complex binding protein##BC007219|MCMBP|79892|minichromosome maintenance complex binding protein##NM_024834|MCMBP|79892|minichromosome maintenance complex binding protein##BC000935|MCMBP|79892|minichromosome maintenance complex binding protein##NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##NM_018117|WDR11|55717|WD repeat domain 11##BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11	0.992103	0.0	denovo_WM_7:3:0.291	denovo_WM_7:8:0.484
chr1	212967894	212968038	reg1004112.p1	8.042	+	AK293129 NM_001042552 NM_001042553 NM_001146169 NM_001146170 NM_001146171 AK304557 TSC_hg19_v1_chr1_+_212965255 BC113638 BC117485 BC143956 BC143957 AL832248 BC048115 HQ258161	-2748	+	AB528354 CU675531 DQ892899 DQ896149 AK222996 AF201941 TSC_hg19_v1_chr1_-_212965111 BC007067 AK223260 AK303250 BC036048 AF255793 AK313730 NM_001042549 NM_015471	-2845	-	TSC_hg19_v1_chr1_-_212873317 AF255346 NM_018664	-94646	-	AY640234 BC035742 NM_001024601	53002	-	TSC_hg19_v1_chr1_-_213031441 AY030238 AY030239 AK092887	63498	-	AF118637 NM_014053 AK314481 BC048312 TSC_hg19_v1_chr1_+_213031754	63714	+	AK293129|TATDN3|128387|TatD DNase domain containing 3##NM_001042552|TATDN3|128387|TatD DNase domain containing 3##NM_001042553|TATDN3|128387|TatD DNase domain containing 3##NM_001146169|TATDN3|128387|TatD DNase domain containing 3##NM_001146170|TATDN3|128387|TatD DNase domain containing 3##NM_001146171|TATDN3|128387|TatD DNase domain containing 3##AK304557|TATDN3|128387|TatD DNase domain containing 3##BC113638|TATDN3|128387|TatD DNase domain containing 3##BC117485|TATDN3|128387|TatD DNase domain containing 3##BC143956|TATDN3|128387|TatD DNase domain containing 3##BC143957|TATDN3|128387|TatD DNase domain containing 3##AL832248|TATDN3|128387|TatD DNase domain containing 3##BC048115|TATDN3|128387|TatD DNase domain containing 3##HQ258161|TATDN3|128387|TatD DNase domain containing 3##DQ892899|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##DQ896149|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK222996|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF201941|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC007067|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK223260|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK303250|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC036048|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255793|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK313730|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001042549|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_015471|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255346|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##NM_018664|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##AY640234|C1orf227|149643|chromosome 1 open reading frame 227##BC035742|C1orf227|149643|chromosome 1 open reading frame 227##NM_001024601|C1orf227|149643|chromosome 1 open reading frame 227##AY030238|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY030239|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AF118637|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##NM_014053|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##AK314481|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##BC048312|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1	0.990997	0.0	denovo_WM_7:-24:0.589	denovo_WM_7:-25:0.203
chr14	93605616	93605763	reg1005144.p1	8.042	+	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	-23475	-	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	-24098	-	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-216092	+	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	45511	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	45556	-	AK315522 TSC_hg19_v1_chr14_-_93651261	45579	-	BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##AK315522|MOAP1|64112|modulator of apoptosis 1	0.0	0.088844	
chr10	126677406	126677549	reg1003928.p2	8.041	+	NM_017580	-46786	+	NM_032182 TSC_hg19_v1_chr10_+_126490387 AK296677 D63877 BC008999	-187105	+	TSC_hg19_v1_chr10_-_126480455 CU693146 AL832292 AF318345 BC026167 NM_212554	-197073	-	AF222711 NM_022802	38975	-	TSC_hg19_v1_chr10_-_126849010 AF016507 BC072020	171549	-	BC052276 AL833398 BC002486 TSC_hg19_v1_chr10_-_126849101 NM_001329	171639	-	NM_017580|ZRANB1|54764|zinc finger, RAN-binding domain containing 1##NM_032182|FAM175B|23172|family with sequence similarity 175, member B##AK296677|FAM175B|23172|family with sequence similarity 175, member B##D63877|FAM175B|23172|family with sequence similarity 175, member B##BC008999|FAM175B|23172|family with sequence similarity 175, member B##AL832292|METTL10|399818|methyltransferase like 10##AF318345|METTL10|399818|methyltransferase like 10##BC026167|METTL10|399818|methyltransferase like 10##NM_212554|METTL10|399818|methyltransferase like 10##AF222711|CTBP2|1488|C-terminal binding protein 2##NM_022802|CTBP2|1488|C-terminal binding protein 2##AF016507|CTBP2|1488|C-terminal binding protein 2##BC072020|CTBP2|1488|C-terminal binding protein 2##BC052276|CTBP2|1488|C-terminal binding protein 2##AL833398|CTBP2|1488|C-terminal binding protein 2##BC002486|CTBP2|1488|C-terminal binding protein 2##NM_001329|CTBP2|1488|C-terminal binding protein 2	0.998423	0.0	denovo_WM_7:-16:0.457	denovo_WM_7:-17:0.457
chr21	16250202	16250370	reg1003748.p1	8.041	+	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	-331637	-	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-494813	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-661789	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	186931	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	852039	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	852255	+	BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25	0.0	0.0	
chr19	1909083	1909196	reg1003165.p1	8.039	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	-3734	+	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	-3787	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-23635	-	TSC_hg19_v1_chr19_+_1941164 NM_001319	32024	+	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	32049	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	106531	-	AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2	0.996704	0.0	denovo_WM_7:-28:0.311	denovo_WM_7:-29:0.608
chr6	88506652	88506832	reg1003294.p2	8.039	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-94754	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-94794	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-94833	-	BC029488 NM_030960 AF203447	250788	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	348294	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	369024	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.993729	0.0	denovo_WM_7:64:0.520	denovo_WM_7:65:0.202	denovo_WM_7:67:0.201
chr3	197436167	197436289	reg1004119.p1	8.038	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-81475	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-136027	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-153386	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	27558	-	AK303462 NM_001011537	40195	+	NM_001145642	40339	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	0.858766	0.0	denovo_WM_7:34:0.228	denovo_WM_7:35:0.514
chr5	126094422	126094602	reg1003797.p2	8.036	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-127097	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-157880	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-163656	-	NM_005573 BC052951	17803	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	18319	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	18370	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.943424	0.0	denovo_WM_7:-21:0.524	denovo_WM_7:-22:0.407
chr21	43813325	43813493	reg1003885.p2	8.035	+	M12075 BC032811 NM_003225 X00474 X52003	-26787	-	X51698 BC032820 NM_005423	-42271	-	NM_003226 AF432265	-77677	-	AY358458 AF201380 AF267741 AK172842 AB038157 AB038160 NM_024022 NM_032405	2752	-	NM_001001895 NM_001243467 NM_018961 AK313367 AK301279 BC028138 AJ277750 BC069357 BC069483 BC069577 BC069511 TSC_hg19_v1_chr21_+_43824026 AK308151 AF520809 AF521702 CU686870	10603	+	HQ258144 AK314746 BC101519 BC113367 AK057315 AB041016 NM_080860 AB006536	102971	-	M12075|TFF1|7031|trefoil factor 1##BC032811|TFF1|7031|trefoil factor 1##NM_003225|TFF1|7031|trefoil factor 1##X00474|TFF1|7031|trefoil factor 1##X52003|TFF1|7031|trefoil factor 1##X51698|TFF2|7032|trefoil factor 2##BC032820|TFF2|7032|trefoil factor 2##NM_005423|TFF2|7032|trefoil factor 2##NM_003226|TFF3|7033|trefoil factor 3 (intestinal)##AF432265|TFF3|7033|trefoil factor 3 (intestinal)##AY358458|TMPRSS3|64699|transmembrane protease, serine 3##AF201380|TMPRSS3|64699|transmembrane protease, serine 3##AF267741|TMPRSS3|64699|transmembrane protease, serine 3##AK172842|TMPRSS3|64699|transmembrane protease, serine 3##AB038157|TMPRSS3|64699|transmembrane protease, serine 3##AB038160|TMPRSS3|64699|transmembrane protease, serine 3##NM_024022|TMPRSS3|64699|transmembrane protease, serine 3##NM_032405|TMPRSS3|64699|transmembrane protease, serine 3##NM_001001895|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_001243467|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_018961|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK313367|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK301279|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC028138|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AJ277750|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069357|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069483|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069577|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069511|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK308151|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF520809|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF521702|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##HQ258144|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK314746|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC101519|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC113367|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK057315|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB041016|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##NM_080860|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB006536|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)	0.98931	0.0	denovo_WM_7:-41:0.327	denovo_WM_7:-43:0.561
chr12	6536600	6536762	reg1003272.p2	8.034	+	TSC_hg19_v1_chr12_+_6493333 AK095418 BC026262 AK027080 L04270 NM_002342 AB527559 DQ891995 DQ895185 CU693188	-43309	+	AK304379 NM_001159575	-50159	-	NM_001038	-51777	-	AK315732 NM_001242 BC012160 M63928 DQ892296 EU176659 AB590221 CU680244	17465	+	NM_018009 TSC_hg19_v1_chr12_+_6561272 BC015017 AK223163 AK001005 AK002056 AK222956 AK098035 HQ258015	24613	+	TSC_hg19_v1_chr12_-_6579844 AF060538 BC023286 AK289498 AK296294 AK303137 AK309184 NM_014231 NM_016830 NM_199245	43133	-	AK095418|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##BC026262|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK027080|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##L04270|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##NM_002342|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ891995|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ895185|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK304379|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001159575|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001038|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##AK315732|CD27|939|CD27 molecule##NM_001242|CD27|939|CD27 molecule##BC012160|CD27|939|CD27 molecule##M63928|CD27|939|CD27 molecule##DQ892296|CD27|939|CD27 molecule##EU176659|CD27|939|CD27 molecule##NM_018009|TAPBPL|55080|TAP binding protein-like##BC015017|TAPBPL|55080|TAP binding protein-like##AK223163|TAPBPL|55080|TAP binding protein-like##AK001005|TAPBPL|55080|TAP binding protein-like##AK002056|TAPBPL|55080|TAP binding protein-like##AK222956|TAPBPL|55080|TAP binding protein-like##AK098035|TAPBPL|55080|TAP binding protein-like##HQ258015|TAPBPL|55080|TAP binding protein-like##AF060538|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##BC023286|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK289498|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK296294|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK303137|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK309184|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_014231|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_016830|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_199245|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)	1.96547	0.0	denovo_WM_7:32:0.446	denovo_WM_7:33:0.516	denovo_WM_7:50:0.919
chr21	47393467	47393647	reg1004111.p1	8.034	+	AF176329 NM_001130141 NM_020528 BC012061 AK310672	-123669	+	TSC_hg19_v1_chr21_+_47063638 AK310131	-329928	+	TSC_hg19_v1_chr21_-_46962344 U17566 U15939 U19720 BC003068 AK313125 AK307623 NM_001205206 NM_194255	-431225	-	TSC_hg19_v1_chr21_+_47401683 NM_001848 BC052575 AK298968 AK299396 AK307989 BC032821 X15879	8128	+	TSC_hg19_v1_chr21_+_47518062 NM_001849 NM_058174 NM_058175 BC065509	124493	+	AY029208 EU832113 EU832207 TSC_hg19_v1_chr21_+_47531438	137846	+	AF176329|PCBP3|54039|poly(rC) binding protein 3##NM_001130141|PCBP3|54039|poly(rC) binding protein 3##NM_020528|PCBP3|54039|poly(rC) binding protein 3##BC012061|PCBP3|54039|poly(rC) binding protein 3##AK310672|PCBP3|54039|poly(rC) binding protein 3##AK310131|PCBP3|54039|poly(rC) binding protein 3##U17566|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U15939|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U19720|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##BC003068|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK313125|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK307623|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205206|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_194255|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001848|COL6A1|1291|collagen, type VI, alpha 1##BC052575|COL6A1|1291|collagen, type VI, alpha 1##AK298968|COL6A1|1291|collagen, type VI, alpha 1##AK299396|COL6A1|1291|collagen, type VI, alpha 1##AK307989|COL6A1|1291|collagen, type VI, alpha 1##BC032821|COL6A1|1291|collagen, type VI, alpha 1##X15879|COL6A1|1291|collagen, type VI, alpha 1##NM_001849|COL6A2|1292|collagen, type VI, alpha 2##NM_058174|COL6A2|1292|collagen, type VI, alpha 2##NM_058175|COL6A2|1292|collagen, type VI, alpha 2##BC065509|COL6A2|1292|collagen, type VI, alpha 2##AY029208|COL6A2|1292|collagen, type VI, alpha 2##EU832113|COL6A2|1292|collagen, type VI, alpha 2##EU832207|COL6A2|1292|collagen, type VI, alpha 2	0.996315	0.0	
chr1	183576547	183576702	reg1003954.p1	8.033	+	M32011 TSC_hg19_v1_chr1_-_183560049 NM_001127651	-16592	-	TSC_hg19_v1_chr1_-_183559669 BC001606 NM_000433 NM_001190789 NM_001190794	-16911	-	BT007439 AB590135 DQ893650 DQ895812 CU674784 AF527950 TSC_hg19_v1_chr1_-_183559595 AK296672 AK312666 AK298713	-17066	-	AB528796 TSC_hg19_v1_chr1_-_183604811 AF017807 CU691198 AF006088	28184	-	TSC_hg19_v1_chr1_-_183604862 AK129598	28233	-	TSC_hg19_v1_chr1_-_183604891 BC057237 NM_005717 BC071857	28316	-	M32011|NCF2|4688|neutrophil cytosolic factor 2##NM_001127651|NCF2|4688|neutrophil cytosolic factor 2##BC001606|NCF2|4688|neutrophil cytosolic factor 2##NM_000433|NCF2|4688|neutrophil cytosolic factor 2##NM_001190789|NCF2|4688|neutrophil cytosolic factor 2##NM_001190794|NCF2|4688|neutrophil cytosolic factor 2##BT007439|NCF2|4688|neutrophil cytosolic factor 2##DQ893650|NCF2|4688|neutrophil cytosolic factor 2##DQ895812|NCF2|4688|neutrophil cytosolic factor 2##AF527950|NCF2|4688|neutrophil cytosolic factor 2##AK296672|NCF2|4688|neutrophil cytosolic factor 2##AK312666|NCF2|4688|neutrophil cytosolic factor 2##AK298713|NCF2|4688|neutrophil cytosolic factor 2##AF017807|ARPC5|10092|actin related protein 2/3 complex, subunit 5, 16kDa##AF006088|ARPC5|10092|actin related protein 2/3 complex, subunit 5, 16kDa##AK129598|ARPC5|10092|actin related protein 2/3 complex, subunit 5, 16kDa##BC057237|ARPC5|10092|actin related protein 2/3 complex, subunit 5, 16kDa##NM_005717|ARPC5|10092|actin related protein 2/3 complex, subunit 5, 16kDa##BC071857|ARPC5|10092|actin related protein 2/3 complex, subunit 5, 16kDa	0.027426	0.0	
chr16	90014592	90014692	reg1003488.p1	8.032	+	NM_006086 TSC_hg19_v1_chr16_+_89989752 AK314616 AK058140 AK223039 AK307201 BC000748 BC003021 BC064975 AB590840 AF427491 CU674384 U47634 S62643	-24884	+	AK292219 NM_001197181	-26226	+	TSC_hg19_v1_chr16_+_89985278 AK225902 AK054666 BC007856	-29365	+	NM_001242816 NM_001242817 NM_001242818 NM_001242820 NM_001242821 NM_001242822 NM_017702 NM_207514 TSC_hg19_v1_chr16_+_90015202 AK095051 AK225539 AK295880 AK000193 AK096485 AK131370 AK296410 BC105592	528	+	BC015482 NM_001242819 BC130482 BC144038 AK303510	1220	+	AK315352 TSC_hg19_v1_chr16_-_90038896 AK056131 BC009263 AK074351	24272	-	NM_006086|TUBB3|10381|tubulin, beta 3 class III##AK314616|TUBB3|10381|tubulin, beta 3 class III##AK058140|TUBB3|10381|tubulin, beta 3 class III##AK223039|TUBB3|10381|tubulin, beta 3 class III##AK307201|TUBB3|10381|tubulin, beta 3 class III##BC000748|TUBB3|10381|tubulin, beta 3 class III##BC003021|TUBB3|10381|tubulin, beta 3 class III##BC064975|TUBB3|10381|tubulin, beta 3 class III##AF427491|TUBB3|10381|tubulin, beta 3 class III##U47634|TUBB3|10381|tubulin, beta 3 class III##S62643|TUBB3|10381|tubulin, beta 3 class III##AK292219|TUBB3|10381|tubulin, beta 3 class III##NM_001197181|TUBB3|10381|tubulin, beta 3 class III##AK225902|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##AK054666|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##BC007856|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##NM_001242816|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_001242817|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_001242818|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_001242820|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_001242821|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_001242822|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_017702|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_207514|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK095051|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK225539|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK295880|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK000193|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK096485|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK131370|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK296410|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##BC105592|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##BC015482|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##NM_001242819|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##BC130482|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##BC144038|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK303510|DEF8|54849|differentially expressed in FDCP 8 homolog (mouse)##AK315352|CENPBD1|92806|CENPB DNA-binding domains containing 1##AK056131|CENPBD1|92806|CENPB DNA-binding domains containing 1##BC009263|CENPBD1|92806|CENPB DNA-binding domains containing 1##AK074351|CENPBD1|92806|CENPB DNA-binding domains containing 1	0.570324	0.010175	denovo_WM_7:40:0.397
chr6_cox_hap2	4735943	4736095	reg1004140.p2	8.031	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.996311	0.0	denovo_WM_7:-24:0.252	denovo_WM_7:-27:0.504
chr11	65695721	65695875	reg1004780.p1	8.030	+	TSC_hg19_v1_chr11_+_65686920 BC010025 AB463581 CU679579 EU446936 X96506	-8839	+	NM_006442 TSC_hg19_v1_chr11_+_65686745	-9059	+	AF073483 TSC_hg19_v1_chr11_-_65686528 BC013185 NM_001135635 NM_031450	-9300	-	AK057442 BC104021 BC104022 BC104023 NM_152762	17316	+	NM_005146 TSC_hg19_v1_chr11_+_65729203 AK223016 AK293200 AK297589 AK309104 AK298184 BC001058 AB006198 AF353625 DQ891694 EU176645 BT006637 Y14314	33471	+	TSC_hg19_v1_chr11_+_65769409 AF068235 NM_001143985 NM_003860	73681	+	BC010025|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##EU446936|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##X96506|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##NM_006442|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##AF073483|C11orf68|83638|chromosome 11 open reading frame 68##BC013185|C11orf68|83638|chromosome 11 open reading frame 68##NM_001135635|C11orf68|83638|chromosome 11 open reading frame 68##NM_031450|C11orf68|83638|chromosome 11 open reading frame 68##AK057442|TSGA10IP|254187|testis specific, 10 interacting protein##BC104021|TSGA10IP|254187|testis specific, 10 interacting protein##BC104022|TSGA10IP|254187|testis specific, 10 interacting protein##BC104023|TSGA10IP|254187|testis specific, 10 interacting protein##NM_152762|TSGA10IP|254187|testis specific, 10 interacting protein##NM_005146|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK223016|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK293200|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK297589|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK298184|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BC001058|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AB006198|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AF353625|SART1|9092|squamous cell carcinoma antigen recognized by T cells##DQ891694|SART1|9092|squamous cell carcinoma antigen recognized by T cells##EU176645|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BT006637|SART1|9092|squamous cell carcinoma antigen recognized by T cells##Y14314|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AF068235|BANF1|8815|barrier to autointegration factor 1##NM_001143985|BANF1|8815|barrier to autointegration factor 1##NM_003860|BANF1|8815|barrier to autointegration factor 1	1.992835	0.0	denovo_WM_7:54:0.271	denovo_WM_7:55:0.674	denovo_WM_7:70:0.932
chr19	30328412	30328567	reg1003705.p2	8.030	+	TSC_hg19_v1_chr19_+_30302897 AK291549 NM_001238 BC035498	-25588	+	TSC_hg19_v1_chr19_-_30206402 NM_031448	-122067	-	NM_001031726 TSC_hg19_v1_chr19_-_30206184 BC004957 BC009946 BC063518 AK057185	-122397	-	BC026184 NM_001252641	86061	+	TSC_hg19_v1_chr19_+_30433145 NM_003796 AK226173 AF091095 AK292170 BC067259 AK314313 AK001437 NM_134447 AB385084	104793	+	BC150171 AB002388 BC146757 NM_014717 BC132720 BC132722	534891	+	AK291549|CCNE1|898|cyclin E1##NM_001238|CCNE1|898|cyclin E1##BC035498|CCNE1|898|cyclin E1##NM_031448|C19orf12|83636|chromosome 19 open reading frame 12##NM_001031726|C19orf12|83636|chromosome 19 open reading frame 12##BC004957|C19orf12|83636|chromosome 19 open reading frame 12##BC009946|C19orf12|83636|chromosome 19 open reading frame 12##BC063518|C19orf12|83636|chromosome 19 open reading frame 12##AK057185|C19orf12|83636|chromosome 19 open reading frame 12##BC026184|URI1|8725|URI1, prefoldin-like chaperone##NM_001252641|URI1|8725|URI1, prefoldin-like chaperone##NM_003796|URI1|8725|URI1, prefoldin-like chaperone##AK226173|URI1|8725|URI1, prefoldin-like chaperone##AF091095|URI1|8725|URI1, prefoldin-like chaperone##AK292170|URI1|8725|URI1, prefoldin-like chaperone##BC067259|URI1|8725|URI1, prefoldin-like chaperone##AK314313|URI1|8725|URI1, prefoldin-like chaperone##AK001437|URI1|8725|URI1, prefoldin-like chaperone##NM_134447|URI1|8725|URI1, prefoldin-like chaperone##BC150171|ZNF536|9745|zinc finger protein 536##AB002388|ZNF536|9745|zinc finger protein 536##BC146757|ZNF536|9745|zinc finger protein 536##NM_014717|ZNF536|9745|zinc finger protein 536##BC132720|ZNF536|9745|zinc finger protein 536##BC132722|ZNF536|9745|zinc finger protein 536	0.0	0.0	
chr3	23898655	23898804	reg1003751.p2	8.029	+	AK295354 NM_001202476	-46796	+	AK314854 TSC_hg19_v1_chr3_+_23847474	-51255	+	TSC_hg19_v1_chr3_+_23847445 NM_003341 NM_182666 BC009139	-51319	+	NM_001253379 NM_001253384 NM_002948	59565	+	TSC_hg19_v1_chr3_-_23958419 BC012145 BC066940	59711	-	TSC_hg19_v1_chr3_-_23958512 NM_020345	59790	-	NM_001202476|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##AK314854|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_003341|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_182666|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##BC009139|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_001253379|RPL15|6138|ribosomal protein L15##NM_001253384|RPL15|6138|ribosomal protein L15##NM_002948|RPL15|6138|ribosomal protein L15##BC012145|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##BC066940|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##NM_020345|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1	0.980239	0.0	denovo_WM_7:16:0.944
chr13	79768465	79768621	reg1004046.p1	8.028	+	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	-535250	-	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	-590820	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	-598261	+	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	211411	-	BC030806 TSC_hg19_v1_chr13_-_79980382	211840	-	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	211908	+	AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##BC030806|RBM26|64062|RNA binding motif protein 26##AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)	0.945348	0.0	denovo_WM_7:-22:0.945
chr19	39354999	39355157	reg1001237.p1	8.027	+	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	-12102	-	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-14453	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-14502	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	13832	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	35223	+	TSC_hg19_v1_chr19_-_39390229 AK314492 AB009274 AF160214 AY030277 AF095714 AK025876 AK225824 AK054642 AK094810 BC003012 BC003547 AF083107 NM_012237 NM_001193286 NM_030593	35256	-	AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK314492|SIRT2|22933|sirtuin 2##AB009274|SIRT2|22933|sirtuin 2##AF160214|SIRT2|22933|sirtuin 2##AY030277|SIRT2|22933|sirtuin 2##AF095714|SIRT2|22933|sirtuin 2##AK025876|SIRT2|22933|sirtuin 2##AK225824|SIRT2|22933|sirtuin 2##AK054642|SIRT2|22933|sirtuin 2##AK094810|SIRT2|22933|sirtuin 2##BC003012|SIRT2|22933|sirtuin 2##BC003547|SIRT2|22933|sirtuin 2##AF083107|SIRT2|22933|sirtuin 2##NM_012237|SIRT2|22933|sirtuin 2##NM_001193286|SIRT2|22933|sirtuin 2##NM_030593|SIRT2|22933|sirtuin 2	1.042947	0.0	denovo_WM_7:5:0.965
chr10	98620733	98620896	reg1003795.p1	8.026	+	TSC_hg19_v1_chr10_+_98592758 NM_032440 AL834245 AB058698	-28086	+	TSC_hg19_v1_chr10_-_98592186 AB593180	-28614	-	TSC_hg19_v1_chr10_+_98592020 NM_001170765 NM_001170766 AL832106 AK308356 BC053359	-28761	+	AK126886 BC024315 NM_015652 CU692918	120253	+	AY029183 AB383997 TSC_hg19_v1_chr10_-_98945570	324660	-	TSC_hg19_v1_chr10_-_98945606 BC146851	324781	-	NM_032440|LCOR|84458|ligand dependent nuclear receptor corepressor##AL834245|LCOR|84458|ligand dependent nuclear receptor corepressor##AB058698|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170765|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170766|LCOR|84458|ligand dependent nuclear receptor corepressor##AL832106|LCOR|84458|ligand dependent nuclear receptor corepressor##BC053359|LCOR|84458|ligand dependent nuclear receptor corepressor##AK126886|C10orf12|26148|chromosome 10 open reading frame 12##BC024315|C10orf12|26148|chromosome 10 open reading frame 12##NM_015652|C10orf12|26148|chromosome 10 open reading frame 12##AY029183|SLIT1|6585|slit homolog 1 (Drosophila)##BC146851|SLIT1|6585|slit homolog 1 (Drosophila)	0.0	0.0	
chr6	53291750	53291914	reg1003637.p1	8.026	+	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	-77971	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	-78111	-	AK125098 TSC_hg19_v1_chr6_-_53213676	-78193	-	TSC_hg19_v1_chr6_-_53409483 AB516284 CU691792 CU692650 EU832317 EU832402	117634	-	TSC_hg19_v1_chr6_-_53409528 BC039894 M90656	117685	-	TSC_hg19_v1_chr6_-_53409821 AB262176 BC022487	117981	-	AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB516284|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832317|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832402|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC039894|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##M90656|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AB262176|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC022487|GCLC|2729|glutamate-cysteine ligase, catalytic subunit	0.986909	0.0	denovo_WM_7:-24:0.245	denovo_WM_7:-25:0.697
chr11	46141671	46141765	reg1003599.p3	8.025	+	TSC_hg19_v1_chr11_+_45944226 BC037291	-197502	+	AK055829 AK096021 NM_152312	-198535	+	TSC_hg19_v1_chr11_-_45939595 AF118240 NM_004813 NM_057174	-202098	-	TSC_hg19_v1_chr11_-_46142986 AK023258 NM_001101802 NM_016621	1279	-	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	157487	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	157842	+	BC037291|GYLTL1B|120071|glycosyltransferase-like 1B##AK055829|GYLTL1B|120071|glycosyltransferase-like 1B##AK096021|GYLTL1B|120071|glycosyltransferase-like 1B##NM_152312|GYLTL1B|120071|glycosyltransferase-like 1B##AF118240|PEX16|9409|peroxisomal biogenesis factor 16##NM_004813|PEX16|9409|peroxisomal biogenesis factor 16##NM_057174|PEX16|9409|peroxisomal biogenesis factor 16##AK023258|PHF21A|51317|PHD finger protein 21A##NM_001101802|PHF21A|51317|PHD finger protein 21A##NM_016621|PHF21A|51317|PHD finger protein 21A##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1	0.893836	0.0	denovo_WM_7:26:0.475	denovo_WM_7:27:0.419
chr10	8111241	8111393	reg1003501.p1	8.024	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-13834	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-14542	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-14668	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	2935940	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	2935968	+	AK299548 TSC_hg19_v1_chr10_+_11047339	2936023	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	0.993978	0.0	denovo_WM_7:34:0.286	denovo_WM_7:35:0.574
chr16	56965099	56965239	reg1003763.p1	8.024	+	AK315298 NM_000339 NM_001126107 NM_001126108 AK223133 X91220 U44128 AB463268	-66037	+	AK294176 NM_001242796	-147780	+	NM_001242795 AK056637 TSC_hg19_v1_chr16_+_56815740	-149434	+	NM_001010989 NM_001010990 NM_014685	578	+	AK302167 TSC_hg19_v1_chr16_+_56966053 AB034989 AK223233 AK291565 AK292088 AK304800 BC009739 DQ837586 AF055001 D14695 BC000086 BC008320 BC032673 DQ891867 EU176642 CR457116 AF055003	972	+	M30185 AK297699 NM_000078 TSC_hg19_v1_chr16_+_56995861 AK291586 BC025739 EU176529 CU693046 BT020064 M83573	30668	+	AK315298|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##NM_000339|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##NM_001126107|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##NM_001126108|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##AK223133|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##X91220|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##U44128|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##AK294176|NUP93|9688|nucleoporin 93kDa##NM_001242796|NUP93|9688|nucleoporin 93kDa##NM_001242795|NUP93|9688|nucleoporin 93kDa##AK056637|NUP93|9688|nucleoporin 93kDa##NM_001010989|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##NM_001010990|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##NM_014685|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK302167|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AB034989|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK223233|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK291565|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK292088|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK304800|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC009739|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ837586|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055001|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##D14695|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC000086|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC008320|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC032673|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ891867|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##EU176642|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##CR457116|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055003|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##M30185|CETP|1071|cholesteryl ester transfer protein, plasma##AK297699|CETP|1071|cholesteryl ester transfer protein, plasma##NM_000078|CETP|1071|cholesteryl ester transfer protein, plasma##AK291586|CETP|1071|cholesteryl ester transfer protein, plasma##BC025739|CETP|1071|cholesteryl ester transfer protein, plasma##EU176529|CETP|1071|cholesteryl ester transfer protein, plasma##BT020064|CETP|1071|cholesteryl ester transfer protein, plasma##M83573|CETP|1071|cholesteryl ester transfer protein, plasma	0.988794	0.0	
chr19	1929438	1929593	reg1003197.p1	8.024	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	-24110	+	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	-24163	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-44011	-	TSC_hg19_v1_chr19_+_1941164 NM_001319	11648	+	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	11673	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	86155	-	AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2	0.0	0.937138	CTCF.p2:-29:0.937
chr3	150102814	150102985	reg1002537.p1	8.024	+	BC012363 TSC_hg19_v1_chr3_+_149689094	-413819	+	TSC_hg19_v1_chr3_-_149688960 BC043646	-413970	-	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	-414203	-	TSC_hg19_v1_chr3_+_150126084 AK297383 AB014569	23173	+	TSC_hg19_v1_chr3_+_150126774 BC044643 NM_014779	23864	+	X75694 CR533472 TSC_hg19_v1_chr3_-_150264030	161071	-	BC012363|LOC646903|646903|uncharacterized LOC646903##BC043646|PFN2|5217|profilin 2##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##AK297383|TSC22D2|9819|TSC22 domain family, member 2##AB014569|TSC22D2|9819|TSC22 domain family, member 2##BC044643|TSC22D2|9819|TSC22 domain family, member 2##NM_014779|TSC22D2|9819|TSC22 domain family, member 2##X75694|SERP1|27230|stress-associated endoplasmic reticulum protein 1##CR533472|SERP1|27230|stress-associated endoplasmic reticulum protein 1	0.0	0.0	
chr6	152636734	152636877	reg1003995.p2	8.024	+	TSC_hg19_v1_chr6_-_152623240 AK310977	-13554	-	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	-507939	+	NM_001122740 U68067	-508352	+	TSC_hg19_v1_chr6_-_152702331 BX537517	65536	-	AK056122 TSC_hg19_v1_chr6_-_152702456 BC039121	65669	-	AF535142 NM_033071 TSC_hg19_v1_chr6_-_152958011	321237	-	AK310977|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##BX537517|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AK056122|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##BC039121|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AF535142|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##NM_033071|SYNE1|23345|spectrin repeat containing, nuclear envelope 1	0.0	0.0	
chr20	60711989	60712111	reg1003810.p2	8.022	+	TSC_hg19_v1_chr20_+_60697578 CU691202	-14406	+	TSC_hg19_v1_chr20_+_60697530 BC057387 NM_144703 BC035702	-14536	+	U75308 NM_003185 Y11354 TSC_hg19_v1_chr20_-_60640882	-71171	-	BT007165 AB528335 DQ890589 DQ893754 AF022815 TSC_hg19_v1_chr20_-_60718388	6324	-	TSC_hg19_v1_chr20_-_60718410 AK312025 BC004427	6372	-	TSC_hg19_v1_chr20_-_60718451 BC014999 AF054185 BC001895 NM_002792	6424	-	BC057387|LSM14B|149986|LSM14B, SCD6 homolog B (S. cerevisiae)##NM_144703|LSM14B|149986|LSM14B, SCD6 homolog B (S. cerevisiae)##BC035702|LSM14B|149986|LSM14B, SCD6 homolog B (S. cerevisiae)##U75308|TAF4|6874|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa##NM_003185|TAF4|6874|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa##Y11354|TAF4|6874|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa##BT007165|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##DQ890589|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##DQ893754|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##AF022815|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##AK312025|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##BC004427|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##BC014999|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##AF054185|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##BC001895|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##NM_002792|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7	0.765394	0.946197	CTCF.p2:16:0.946	denovo_WM_7:-95:0.653
chr2	70326516	70326642	reg1004047.p2	8.020	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-11581	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-11662	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-11752	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	91542	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	149140	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	158671	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.996241	0.0	denovo_WM_7:-11:0.203	denovo_WM_7:-13:0.636
chr19	4230851	4231015	reg1004587.p1	8.019	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-1413	+	NM_133475	-47583	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	-48388	-	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	16157	+	AK056268 NM_020209	47664	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	71471	-	BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2	0.997415	0.0	denovo_WM_7:-50:0.901
chr14	80678567	80678747	reg1004477.p2	8.018	+	BC136514 AB041843 BC074882 BC063118 NM_001007023 NM_001242502 NM_001242503 U53506 AF093774 NM_013989	-753	-	NM_001105250 NM_138970 AK056530 BC059368 BC068469	-932953	+	AB018286 BC152457 NM_004796	-1808565	+	AK292210 NM_000793	18739	-	NM_152446	727226	-	BC045834 AK309833 TSC_hg19_v1_chr14_-_81408073	729401	-	BC136514|DIO2|1734|deiodinase, iodothyronine, type II##AB041843|DIO2|1734|deiodinase, iodothyronine, type II##BC074882|DIO2|1734|deiodinase, iodothyronine, type II##BC063118|DIO2|1734|deiodinase, iodothyronine, type II##NM_001007023|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242502|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242503|DIO2|1734|deiodinase, iodothyronine, type II##U53506|DIO2|1734|deiodinase, iodothyronine, type II##AF093774|DIO2|1734|deiodinase, iodothyronine, type II##NM_013989|DIO2|1734|deiodinase, iodothyronine, type II##NM_001105250|NRXN3|9369|neurexin 3##NM_138970|NRXN3|9369|neurexin 3##AK056530|NRXN3|9369|neurexin 3##BC059368|NRXN3|9369|neurexin 3##BC068469|NRXN3|9369|neurexin 3##AB018286|NRXN3|9369|neurexin 3##BC152457|NRXN3|9369|neurexin 3##NM_004796|NRXN3|9369|neurexin 3##AK292210|DIO2|1734|deiodinase, iodothyronine, type II##NM_000793|DIO2|1734|deiodinase, iodothyronine, type II##NM_152446|CEP128|145508|centrosomal protein 128kDa##BC045834|CEP128|145508|centrosomal protein 128kDa##AK309833|CEP128|145508|centrosomal protein 128kDa	0.0	0.0	
chr17	3597399	3597579	reg1002313.p2	8.018	+	NM_001014764 NM_031298 TSC_hg19_v1_chr17_+_3572105 BC001409	-25387	+	TSC_hg19_v1_chr17_-_3571905 AF028823 NM_001204698 NM_014604	-25551	-	AB590842 CU692828 TSC_hg19_v1_chr17_-_3571873 AF277318 BC035653 U90913 AF234997 AK001327 AK315408 BC023980	-25641	-	DQ234349 CU691640 AB528606 TSC_hg19_v1_chr17_-_3599311 AF070573 AF016709 U49395 U49396	1823	-	BC006220 BC028084 TSC_hg19_v1_chr17_-_3599406 BC039015	1915	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	2103	-	NM_001014764|TMEM93|83460|transmembrane protein 93##NM_031298|TMEM93|83460|transmembrane protein 93##BC001409|TMEM93|83460|transmembrane protein 93##AF028823|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##NM_001204698|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##NM_014604|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AF277318|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##U90913|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AF234997|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AK001327|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AK315408|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##BC023980|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##DQ234349|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF070573|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF016709|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49395|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49396|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC006220|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC028084|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC039015|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5	0.994653	0.222646	denovo_WM_7:43:0.779	CTCF.p2:-75:0.223
chr20	61427026	61427171	reg1004520.p1	8.018	+	TSC_hg19_v1_chr20_+_61340165 NM_002531 X70070	-86922	+	TSC_hg19_v1_chr20_+_61273854 BC015727 AK023410 AF205072 AF104334	-153251	+	TSC_hg19_v1_chr20_+_61273818 NM_016354	-153295	+	AK001776 NM_018270 TSC_hg19_v1_chr20_+_61427832 BC014235 BC009889 BC018841 AB085682 AB463516	749	+	TSC_hg19_v1_chr20_+_61436186 NM_007346 AK314696 AK022234 AF109134 BC008768 BC014137 CU680798 DQ892943 EU176723 BC032666	9095	+	TSC_hg19_v1_chr20_+_61448401 BC011705 NM_001853 DQ892946 DQ896194 L41162	21305	+	NM_002531|NTSR1|4923|neurotensin receptor 1 (high affinity)##X70070|NTSR1|4923|neurotensin receptor 1 (high affinity)##BC015727|SLCO4A1|28231|solute carrier organic anion transporter family, member 4A1##AK023410|SLCO4A1|28231|solute carrier organic anion transporter family, member 4A1##AF205072|SLCO4A1|28231|solute carrier organic anion transporter family, member 4A1##AF104334|SLCO4A1|28231|solute carrier organic anion transporter family, member 4A1##NM_016354|SLCO4A1|28231|solute carrier organic anion transporter family, member 4A1##AK001776|C20orf20|55257|chromosome 20 open reading frame 20##NM_018270|C20orf20|55257|chromosome 20 open reading frame 20##BC014235|C20orf20|55257|chromosome 20 open reading frame 20##BC009889|C20orf20|55257|chromosome 20 open reading frame 20##BC018841|C20orf20|55257|chromosome 20 open reading frame 20##AB085682|C20orf20|55257|chromosome 20 open reading frame 20##NM_007346|OGFR|11054|opioid growth factor receptor##AK314696|OGFR|11054|opioid growth factor receptor##AK022234|OGFR|11054|opioid growth factor receptor##AF109134|OGFR|11054|opioid growth factor receptor##BC008768|OGFR|11054|opioid growth factor receptor##BC014137|OGFR|11054|opioid growth factor receptor##DQ892943|OGFR|11054|opioid growth factor receptor##EU176723|OGFR|11054|opioid growth factor receptor##BC032666|OGFR|11054|opioid growth factor receptor##BC011705|COL9A3|1299|collagen, type IX, alpha 3##NM_001853|COL9A3|1299|collagen, type IX, alpha 3##DQ892946|COL9A3|1299|collagen, type IX, alpha 3##DQ896194|COL9A3|1299|collagen, type IX, alpha 3##L41162|COL9A3|1299|collagen, type IX, alpha 3	0.997305	0.0	denovo_WM_7:35:0.726	denovo_WM_7:36:0.271
chr8	96066555	96066675	reg1004456.p1	8.016	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	-29311	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-104958	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-159163	-	TSC_hg19_v1_chr8_+_96145948 NM_024613	79330	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	79393	+	TSC_hg19_v1_chr8_+_96146116 AK023249	79521	+	NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.99848	0.0	denovo_WM_7:57:0.457	denovo_WM_7:58:0.457
chr10	91095248	91095377	reg1004466.p1	8.015	+	NM_001031683 AK297137 AF026939 BC001383 BC004977	-3029	+	NM_001549 AK290427 AF083470 AK312675 U52513 TSC_hg19_v1_chr10_+_91087771	-7626	+	NM_001547 AK312831 BC005987 BC032839 TSC_hg19_v1_chr10_+_91061802 AK300431	-33557	+	BC040833 AK091558 TSC_hg19_v1_chr10_-_91102477	7143	-	BX647300 NM_001010987 BC150189 BC137368 BC137369	42515	+	NM_001548 BC007091 AK314588 AK308688 X03557	57051	+	NM_001031683|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK297137|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF026939|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC001383|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC004977|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001549|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK290427|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF083470|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK312675|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##U52513|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001547|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK312831|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC005987|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC032839|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK300431|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK091558|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##BX647300|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##NM_001010987|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC150189|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC137368|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC137369|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##NM_001548|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##BC007091|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##AK314588|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##AK308688|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##X03557|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1	0.998657	0.0	denovo_WM_7:-2:0.450	denovo_WM_7:-3:0.450
chr8	19495321	19495477	reg1003209.p1	8.015	+	BX649103 NM_001130518	-35369	-	TSC_hg19_v1_chr8_+_19171505 NM_001174160 NM_022071 AK024799 AK293301 BC082982 NM_001174159	-324116	+	TSC_hg19_v1_chr8_-_18871214 AK091317 AX746913 NM_015310	-624113	-	AY358441 NM_018371	44694	-	AK314625 TSC_hg19_v1_chr8_-_19615422	120018	-	TSC_hg19_v1_chr8_+_19674936 NM_018142	179522	+	BX649103|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001130518|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001174160|SH2D4A|63898|SH2 domain containing 4A##NM_022071|SH2D4A|63898|SH2 domain containing 4A##AK024799|SH2D4A|63898|SH2 domain containing 4A##AK293301|SH2D4A|63898|SH2 domain containing 4A##BC082982|SH2D4A|63898|SH2 domain containing 4A##NM_001174159|SH2D4A|63898|SH2 domain containing 4A##AK091317|PSD3|23362|pleckstrin and Sec7 domain containing 3##NM_015310|PSD3|23362|pleckstrin and Sec7 domain containing 3##AY358441|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018371|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##AK314625|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018142|INTS10|55174|integrator complex subunit 10	0.995936	0.0	denovo_WM_7:-38:0.315	denovo_WM_7:-39:0.315	denovo_WM_7:-40:0.315
chr7	110729978	110730102	reg1003883.p1	8.014	+	NM_001024607	-2205404	-	TSC_hg19_v1_chr7_+_108210317 AL080081 AB026908 AF083247 BC028912 AF115512 AF093824	-2519666	+	TSC_hg19_v1_chr7_+_108210292 AK092204	-2519742	+	NM_001099658 NM_001099660 NM_018334 AK001991 BC035133 TSC_hg19_v1_chr7_+_110731182	1083	+	AF359563 NM_032549 TSC_hg19_v1_chr7_-_111202539 AK311968 BC008497 NM_001244606	472444	-	TSC_hg19_v1_chr7_-_111428948 AK294820	698971	-	NM_001024607|C7orf66|154907|chromosome 7 open reading frame 66##AL080081|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AB026908|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF083247|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##BC028912|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF093824|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AK092204|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##NM_001099658|LRRN3|54674|leucine rich repeat neuronal 3##NM_001099660|LRRN3|54674|leucine rich repeat neuronal 3##NM_018334|LRRN3|54674|leucine rich repeat neuronal 3##AK001991|LRRN3|54674|leucine rich repeat neuronal 3##BC035133|LRRN3|54674|leucine rich repeat neuronal 3##AF359563|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_032549|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK311968|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC008497|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001244606|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK294820|DOCK4|9732|dedicator of cytokinesis 4	0.986101	0.719899	denovo_WM_7:-24:0.846	CTCF.p2:24:0.720
chr9	124321617	124321748	reg1004678.p1	8.014	+	AF378121 AF378122 AF378123 TSC_hg19_v1_chr9_-_124262101 BC045756	-59593	-	BC010703 TSC_hg19_v1_chr9_-_124132529 AK307999 AK304449 AK304518 AK302977 NM_004099 NM_198194	-189140	-	CR542100 X60067 AB528375 DQ891058 DQ894236 CU679799 TSC_hg19_v1_chr9_-_124132480 M81635	-189207	-	NM_032552	7716	+	TSC_hg19_v1_chr9_+_124461442 AF367051	139824	+	AY032952 NM_138709	183381	+	AF378121|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##AF378122|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##AF378123|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##BC045756|GGTA1P|2681|glycoprotein, alpha-galactosyltransferase 1 pseudogene##BC010703|STOM|2040|stomatin##AK307999|STOM|2040|stomatin##AK304449|STOM|2040|stomatin##AK304518|STOM|2040|stomatin##AK302977|STOM|2040|stomatin##NM_004099|STOM|2040|stomatin##NM_198194|STOM|2040|stomatin##CR542100|STOM|2040|stomatin##X60067|STOM|2040|stomatin##DQ891058|STOM|2040|stomatin##DQ894236|STOM|2040|stomatin##M81635|STOM|2040|stomatin##NM_032552|DAB2IP|153090|DAB2 interacting protein##AF367051|DAB2IP|153090|DAB2 interacting protein##AY032952|DAB2IP|153090|DAB2 interacting protein##NM_138709|DAB2IP|153090|DAB2 interacting protein	1.758731	0.0	denovo_WM_7:-29:0.597	denovo_WM_7:-31:0.348	denovo_WM_7:-76:0.725
chr13	49079879	49080003	reg1003857.p2	8.013	+	TSC_hg19_v1_chr13_+_49050586 AK307125	-29351	+	BC039373 BC045651 NM_005767	-61121	-	AK122856 NM_001162497	-78899	-	TSC_hg19_v1_chr13_-_49107217 BC029052 AK298438 AK301516 AK304598	27260	-	TSC_hg19_v1_chr13_-_49107219 AK310081	27281	-	TSC_hg19_v1_chr13_-_49107313 AK315703 NM_001268	27348	-	AK307125|RB1|5925|retinoblastoma 1##BC039373|LPAR6|10161|lysophosphatidic acid receptor 6##BC045651|LPAR6|10161|lysophosphatidic acid receptor 6##NM_005767|LPAR6|10161|lysophosphatidic acid receptor 6##AK122856|LPAR6|10161|lysophosphatidic acid receptor 6##NM_001162497|LPAR6|10161|lysophosphatidic acid receptor 6##BC029052|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK298438|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK301516|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK304598|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK310081|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK315703|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##NM_001268|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	0.847492	0.0	denovo_WM_7:-38:0.714
chr6	16837994	16838115	reg1003840.p2	8.013	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	-76357	-	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-599203	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-694744	+	NM_001190766	264434	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	443800	+	NM_001143941	444240	+	BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24	0.983239	0.0	denovo_WM_7:0:0.621	denovo_WM_7:1:0.362
chr11	1871522	1871644	reg1004305.p1	8.010	+	NM_001145841	-10152	+	BC032148 NM_001145829	-10865	+	NM_003282	-11351	+	NM_002339 TSC_hg19_v1_chr11_+_1874296 AK222733 BC001785 X55188 AK290279 S67783 CR541728 CR541754 CU674886	2703	+	AK092071 AX747343 NM_001242932	14811	+	NM_001013253	18319	+	NM_001145841|TNNI2|7136|troponin I type 2 (skeletal, fast)##BC032148|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_001145829|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_003282|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_002339|LSP1|4046|lymphocyte-specific protein 1##AK222733|LSP1|4046|lymphocyte-specific protein 1##BC001785|LSP1|4046|lymphocyte-specific protein 1##X55188|LSP1|4046|lymphocyte-specific protein 1##AK290279|LSP1|4046|lymphocyte-specific protein 1##S67783|LSP1|4046|lymphocyte-specific protein 1##CR541728|LSP1|4046|lymphocyte-specific protein 1##CR541754|LSP1|4046|lymphocyte-specific protein 1##AK092071|LSP1|4046|lymphocyte-specific protein 1##NM_001242932|LSP1|4046|lymphocyte-specific protein 1##NM_001013253|LSP1|4046|lymphocyte-specific protein 1	0.994579	0.0	
chr1	32293089	32293211	reg1002590.p2	8.010	+	BC114430 AK131447 NM_144569 AK091016 AX746730	-11551	-	TSC_hg19_v1_chr1_-_32264318 AK095829	-28829	-	BC029069 AK096192 TSC_hg19_v1_chr1_-_32264233 BC007910	-28910	-	NM_001195100 NM_001195101	92108	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	110781	-	TSC_hg19_v1_chr1_-_32403992 NM_080391	110847	-	BC114430|SPOCD1|90853|SPOC domain containing 1##AK131447|SPOCD1|90853|SPOC domain containing 1##NM_144569|SPOCD1|90853|SPOC domain containing 1##AK091016|SPOCD1|90853|SPOC domain containing 1##AK095829|SPOCD1|90853|SPOC domain containing 1##BC029069|SPOCD1|90853|SPOC domain containing 1##BC007910|SPOCD1|90853|SPOC domain containing 1##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2	0.992456	0.0	
chr17	53426248	53426388	reg1005270.p1	8.010	+	TSC_hg19_v1_chr17_+_53344967 AK295726 AK074289	-81332	+	AK290043 TSC_hg19_v1_chr17_+_53343204	-83131	+	TSC_hg19_v1_chr17_+_53342370 BC036093 M95585	-83877	+	CR541893 DQ892362 DQ895569 TSC_hg19_v1_chr17_-_53499293 X85750 AK312760 AK303810 BC026324 AY424289 NM_012329	72937	-	BC010128 AK001832 NM_018286	373831	-	AK095175 NM_001099640	383144	-	AK295726|HLF|3131|hepatic leukemia factor##AK074289|HLF|3131|hepatic leukemia factor##AK290043|HLF|3131|hepatic leukemia factor##BC036093|HLF|3131|hepatic leukemia factor##M95585|HLF|3131|hepatic leukemia factor##CR541893|MMD|23531|monocyte to macrophage differentiation-associated##DQ892362|MMD|23531|monocyte to macrophage differentiation-associated##DQ895569|MMD|23531|monocyte to macrophage differentiation-associated##X85750|MMD|23531|monocyte to macrophage differentiation-associated##AK312760|MMD|23531|monocyte to macrophage differentiation-associated##AK303810|MMD|23531|monocyte to macrophage differentiation-associated##BC026324|MMD|23531|monocyte to macrophage differentiation-associated##AY424289|MMD|23531|monocyte to macrophage differentiation-associated##NM_012329|MMD|23531|monocyte to macrophage differentiation-associated##BC010128|TMEM100|55273|transmembrane protein 100##AK001832|TMEM100|55273|transmembrane protein 100##NM_018286|TMEM100|55273|transmembrane protein 100##AK095175|TMEM100|55273|transmembrane protein 100##NM_001099640|TMEM100|55273|transmembrane protein 100	0.0	0.612011	CTCF.p2:1:0.612
chr10	93901807	93901926	reg1003905.p1	8.009	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-218174	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-218350	+	AK315427 BC025966 AK075410 NM_152429	-232646	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	101153	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	148970	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	149188	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	1.959224	0.0	denovo_WM_7:-59:0.326	denovo_WM_7:-60:0.211	denovo_WM_7:-83:0.919
chr15	44035919	44036064	reg1004104.p1	8.006	+	NM_001015001 AK311698 AK316124	-50887	+	BC028728 NM_054020 NM_172095 NM_172097 AK122607 BC064387 BX648099 TSC_hg19_v1_chr15_-_43941088	-94929	-	AK308370 BC129931 NM_153700	-125013	-	TSC_hg19_v1_chr15_+_44038635 NM_005313 AK075481 AK293249 BC036000 Z49835 BC071878 BC014433	2574	+	TSC_hg19_v1_chr15_+_44038656 AK075455	2662	+	TSC_hg19_v1_chr15_+_44038685 U42068 D16234 D83485 AB527303 CU690254 DQ893070 DQ896325	2791	+	NM_001015001|CKMT1A|548596|creatine kinase, mitochondrial 1A##AK316124|CKMT1A|548596|creatine kinase, mitochondrial 1A##BC028728|CATSPER2|117155|cation channel, sperm associated 2##NM_054020|CATSPER2|117155|cation channel, sperm associated 2##NM_172095|CATSPER2|117155|cation channel, sperm associated 2##NM_172097|CATSPER2|117155|cation channel, sperm associated 2##AK122607|CATSPER2|117155|cation channel, sperm associated 2##BC064387|CATSPER2|117155|cation channel, sperm associated 2##BX648099|CATSPER2|117155|cation channel, sperm associated 2##AK308370|STRC|161497|stereocilin##BC129931|STRC|161497|stereocilin##NM_153700|STRC|161497|stereocilin##NM_005313|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075481|PDIA3|2923|protein disulfide isomerase family A, member 3##AK293249|PDIA3|2923|protein disulfide isomerase family A, member 3##BC036000|PDIA3|2923|protein disulfide isomerase family A, member 3##Z49835|PDIA3|2923|protein disulfide isomerase family A, member 3##BC071878|PDIA3|2923|protein disulfide isomerase family A, member 3##BC014433|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075455|PDIA3|2923|protein disulfide isomerase family A, member 3##U42068|PDIA3|2923|protein disulfide isomerase family A, member 3##D16234|PDIA3|2923|protein disulfide isomerase family A, member 3##D83485|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ893070|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ896325|PDIA3|2923|protein disulfide isomerase family A, member 3	1.136141	0.0	denovo_WM_7:32:0.390	denovo_WM_7:33:0.497
chr20	31073061	31073191	reg1002369.p2	8.006	+	BC038088 TSC_hg19_v1_chr20_-_31071385	-1735	-	AK056286 TSC_hg19_v1_chr20_-_31071290 NM_080616	-1861	-	TSC_hg19_v1_chr20_+_31037448 AL080086	-35624	+	BC023657 BC065483 TSC_hg19_v1_chr20_-_31172902	99797	-	BC105014 BC105042 AK091025 AX746738 NM_182584	166544	-	AY542162 TSC_hg19_v1_chr20_-_31331262 BC000628 AK097059 AK027893	258127	-	BC038088|C20orf112|140688|chromosome 20 open reading frame 112##AK056286|C20orf112|140688|chromosome 20 open reading frame 112##NM_080616|C20orf112|140688|chromosome 20 open reading frame 112##BC023657|LOC284804|284804|uncharacterized LOC284804##BC065483|LOC284804|284804|uncharacterized LOC284804##BC105014|C20orf203|284805|chromosome 20 open reading frame 203##BC105042|C20orf203|284805|chromosome 20 open reading frame 203##AK091025|C20orf203|284805|chromosome 20 open reading frame 203##NM_182584|C20orf203|284805|chromosome 20 open reading frame 203##AY542162|COMMD7|149951|COMM domain containing 7##BC000628|COMMD7|149951|COMM domain containing 7##AK097059|COMMD7|149951|COMM domain containing 7##AK027893|COMMD7|149951|COMM domain containing 7	0.071901	0.0	
chr9	80635884	80636039	reg1004158.p2	8.006	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-372730	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-667613	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-843453	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	10223	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	215069	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	276097	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.999592	0.0	
chr8	74780888	74781019	reg1001847.p4	8.005	+	AK290141 NM_001164384	-121011	-	TSC_hg19_v1_chr8_-_74659707 AK307841 AK293729	-121257	-	TSC_hg19_v1_chr8_-_74659103 AK294466 CR627442 NM_001164380 NM_001164381 NM_001164382 NM_001164383 NM_001164385 NM_014393	-121795	-	TSC_hg19_v1_chr8_-_74791061 AK001873 AK021735 BC010900 EU446497 BX538145	10107	-	TSC_hg19_v1_chr8_-_74791074 BX648427 AK225554	10121	-	TSC_hg19_v1_chr8_-_74791084 AY948289	10128	-	AK290141|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164384|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK307841|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK293729|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK294466|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##CR627442|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164380|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164381|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164382|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164383|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164385|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_014393|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK001873|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AK021735|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BC010900|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##EU446497|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BX538145|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BX648427|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AK225554|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AY948289|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)	0.996949	0.0	denovo_WM_7:-6:0.919
chr6	56631727	56631871	reg1003903.p1	8.004	+	AF400226 AF400227 M69225 BC065536 L11690 NM_001723 NM_015548	-124160	-	BC038763 TSC_hg19_v1_chr6_-_56407722	-224091	-	AF330693 TSC_hg19_v1_chr6_-_56258945	-372875	-	TSC_hg19_v1_chr6_-_56708446 U31850	76673	-	AK294830 TSC_hg19_v1_chr6_-_56716493	84653	-	AK299898 TSC_hg19_v1_chr6_-_56716715	84915	-	AF400226|DST|667|dystonin##AF400227|DST|667|dystonin##M69225|DST|667|dystonin##BC065536|DST|667|dystonin##L11690|DST|667|dystonin##NM_001723|DST|667|dystonin##NM_015548|DST|667|dystonin##AF330693|COL21A1|81578|collagen, type XXI, alpha 1##U31850|DST|667|dystonin##AK294830|DST|667|dystonin##AK299898|DST|667|dystonin	0.050864	0.0	
chr1	9715400	9715580	reg1002080.p2	8.001	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-3686	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-66534	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-115854	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	168405	-	TSC_hg19_v1_chr1_-_9884023 AK304813	168531	-	TSC_hg19_v1_chr1_-_9884024 BC033902	168554	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	0.673879	0.0	denovo_WM_7:-7:0.636
chr4	39047610	39047722	reg1003819.p2	8.001	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-1228	+	BC030803 BC060512 AK026888 NM_024943	-13656	-	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-178275	+	AK289785 NM_015990 NM_199039	16185	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	136429	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	320286	-	NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa	0.996444	0.0	denovo_WM_7:-1:0.260	denovo_WM_7:-2:0.669
chr1	214731813	214731981	reg1004340.p2	7.998	+	TSC_hg19_v1_chr1_-_214724977 NM_005401	-6899	-	TSC_hg19_v1_chr1_-_214724946 AK298120 BX538306 AK291641	-6998	-	X82676 TSC_hg19_v1_chr1_-_214724620 BC017300 AK090596	-7290	-	TSC_hg19_v1_chr1_+_214776547 NM_016343 U19769 AK307690	44624	+	TSC_hg19_v1_chr1_+_214776585 U30872	44721	+	NM_001017424	446987	+	NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK298120|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK291641|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##X82676|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##BC017300|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK090596|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_016343|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##U19769|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##AK307690|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##U30872|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##NM_001017424|KCNK2|3776|potassium channel, subfamily K, member 2	0.999142	0.0	denovo_WM_7:11:0.739
chr1	24054730	24054910	reg1004110.p1	7.998	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-36521	+	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	-36540	+	NM_002167 X69111	-168536	-	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	15084	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	15163	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	49949	-	BC018970|RPL11|6135|ribosomal protein L11##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AL049675|LOC100506963|100506963|uncharacterized LOC100506963	1.839976	0.0	denovo_WM_7:14:0.685	denovo_WM_7:42:0.779
chr2	61198903	61199071	reg1001332.p1	7.998	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	-90200	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	-90250	+	TSC_hg19_v1_chr2_+_61108702 AK303926	-90282	+	TSC_hg19_v1_chr2_-_61244326 AK291729 BC065197	45330	-	AK311426 NM_002618 TSC_hg19_v1_chr2_+_61244828	45782	+	TSC_hg19_v1_chr2_+_61244858 AK315244 AB022192 AF048755 BC067090 BC020547 BC040953 BC048804 BC035584 AB528913 CU688242 U71374	45887	+	BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK291729|PUS10|150962|pseudouridylate synthase 10##NM_002618|PEX13|5194|peroxisomal biogenesis factor 13##AK315244|PEX13|5194|peroxisomal biogenesis factor 13##AB022192|PEX13|5194|peroxisomal biogenesis factor 13##AF048755|PEX13|5194|peroxisomal biogenesis factor 13##BC067090|PEX13|5194|peroxisomal biogenesis factor 13##U71374|PEX13|5194|peroxisomal biogenesis factor 13	1.416149	0.0	denovo_WM_7:3:0.305
chr9	38363157	38363266	reg1003341.p1	7.997	+	X75342 NM_003028 TSC_hg19_v1_chr9_-_38069225 BC094765	-293970	-	BC136581 BC136582 TSC_hg19_v1_chr9_-_38069194	-294070	-	TSC_hg19_v1_chr9_-_37904351 AK098185 NM_033412	-458845	-	TSC_hg19_v1_chr9_+_38392669 NM_000692	29462	+	TSC_hg19_v1_chr9_+_38392698 AK313344	29486	+	TSC_hg19_v1_chr9_+_38392760 AK297020 BC001619 AK225950	29531	+	X75342|SHB|6461|Src homology 2 domain containing adaptor protein B##NM_003028|SHB|6461|Src homology 2 domain containing adaptor protein B##BC136581|SHB|6461|Src homology 2 domain containing adaptor protein B##BC136582|SHB|6461|Src homology 2 domain containing adaptor protein B##AK098185|MCART1|92014|mitochondrial carrier triple repeat 1##NM_033412|MCART1|92014|mitochondrial carrier triple repeat 1##NM_000692|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##AK313344|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##AK297020|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##BC001619|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##AK225950|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1	0.965898	0.466776	CTCF.p2:1:0.467	denovo_WM_7:36:0.921
chr12	120183129	120183275	reg1004327.p1	7.994	+	TSC_hg19_v1_chr12_+_120105769 AK312495 NM_006253 BC017671 AF022116 BC001007 BC001056 BC001823 BC018818 U83994 AK301165 Y12556 AB590811 AJ224515	-77350	+	NM_001136534 AK296289	-151902	+	BC040553 NM_178499	-410686	+	AK123136 TSC_hg19_v1_chr12_-_120241305	58095	-	TSC_hg19_v1_chr12_-_120315112 AY209000 AY257469 BC008127 AY681966 NM_001206999 NM_007174	131891	-	TSC_hg19_v1_chr12_+_120427616 AK129960 NM_207311 U88834	244396	+	AK312495|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##NM_006253|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC017671|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AF022116|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001007|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001056|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001823|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC018818|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##U83994|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AK301165|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##Y12556|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AJ224515|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##NM_001136534|TMEM233|387890|transmembrane protein 233##AK296289|TMEM233|387890|transmembrane protein 233##BC040553|CCDC60|160777|coiled-coil domain containing 60##NM_178499|CCDC60|160777|coiled-coil domain containing 60##AK123136|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY209000|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY257469|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##BC008127|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY681966|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_001206999|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_007174|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK129960|CCDC64|92558|coiled-coil domain containing 64##NM_207311|CCDC64|92558|coiled-coil domain containing 64##U88834|CCDC64|92558|coiled-coil domain containing 64	1.040777	0.0	
chr16	50247958	50248088	reg1005107.p1	7.993	+	TSC_hg19_v1_chr16_+_50186838 AK300918 NM_001040284 NM_001040285	-61188	+	TSC_hg19_v1_chr16_+_50099915 AK289949 BC018730 BC033077	-148063	+	NM_182922 TSC_hg19_v1_chr16_+_50099906 AF462442 AK000725 BC014415	-148130	+	AK093706 TSC_hg19_v1_chr16_+_50300480 BC028085	52453	+	TSC_hg19_v1_chr16_+_50308041 BC039891	60030	+	NM_001114 D25538	73800	+	AK300918|PAPD5|64282|PAP associated domain containing 5##NM_001040284|PAPD5|64282|PAP associated domain containing 5##NM_001040285|PAPD5|64282|PAP associated domain containing 5##AK289949|HEATR3|55027|HEAT repeat containing 3##BC018730|HEATR3|55027|HEAT repeat containing 3##BC033077|HEATR3|55027|HEAT repeat containing 3##NM_182922|HEATR3|55027|HEAT repeat containing 3##AF462442|HEATR3|55027|HEAT repeat containing 3##AK000725|HEATR3|55027|HEAT repeat containing 3##BC014415|HEATR3|55027|HEAT repeat containing 3##AK093706|ADCY7|113|adenylate cyclase 7##BC039891|ADCY7|113|adenylate cyclase 7##NM_001114|ADCY7|113|adenylate cyclase 7##D25538|ADCY7|113|adenylate cyclase 7	0.0	0.902009	CTCF.p2:10:0.902
chr19	16329817	16329941	reg1002404.p2	7.993	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-21129	+	TSC_hg19_v1_chr19_+_16296220 AK312058 BC000639 AL050157 NM_014077 BC017286 AF151902 AM393549 AM393669	-33647	+	AB050868 BC069320 BC069428 BC069524 NM_054113 HQ258101 BC112200 BC113591	-45569	-	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	105762	+	AF134053 TSC_hg19_v1_chr19_+_16435803	105890	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	252897	-	AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK312058|FAM32A|26017|family with sequence similarity 32, member A##BC000639|FAM32A|26017|family with sequence similarity 32, member A##AL050157|FAM32A|26017|family with sequence similarity 32, member A##NM_014077|FAM32A|26017|family with sequence similarity 32, member A##BC017286|FAM32A|26017|family with sequence similarity 32, member A##AF151902|FAM32A|26017|family with sequence similarity 32, member A##AM393549|FAM32A|26017|family with sequence similarity 32, member A##AM393669|FAM32A|26017|family with sequence similarity 32, member A##AB050868|CIB3|117286|calcium and integrin binding family member 3##BC069320|CIB3|117286|calcium and integrin binding family member 3##BC069428|CIB3|117286|calcium and integrin binding family member 3##BC069524|CIB3|117286|calcium and integrin binding family member 3##NM_054113|CIB3|117286|calcium and integrin binding family member 3##HQ258101|CIB3|117286|calcium and integrin binding family member 3##BC112200|CIB3|117286|calcium and integrin binding family member 3##BC113591|CIB3|117286|calcium and integrin binding family member 3##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1	0.999406	0.0	denovo_WM_7:4:0.848
chr6	26195836	26196016	reg1000398.p2	7.993	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	-6604	-	BC101748 BC101750 EU446967 NM_003523	-11936	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-37562	+	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	1570	-	BC031333 NM_003530 BC128035 CR541970 CR541999 EU446963 NM_021065 BC093807 BC093809 AK312127 AK316611	3553	-	TSC_hg19_v1_chr6_+_26199747 BC056264 BC096120 BC096123 NM_003522	3823	+	BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d##BC031333|HIST1H3D|8351|histone cluster 1, H3d##NM_003530|HIST1H3D|8351|histone cluster 1, H3d##BC128035|HIST1H2AD|3013|histone cluster 1, H2ad##CR541970|HIST1H2AD|3013|histone cluster 1, H2ad##CR541999|HIST1H2AD|3013|histone cluster 1, H2ad##EU446963|HIST1H2AD|3013|histone cluster 1, H2ad##NM_021065|HIST1H2AD|3013|histone cluster 1, H2ad##BC093807|HIST1H2AD|3013|histone cluster 1, H2ad##BC093809|HIST1H2AD|3013|histone cluster 1, H2ad##AK312127|HIST1H2AD|3013|histone cluster 1, H2ad##AK316611|HIST1H3D|8351|histone cluster 1, H3d##BC056264|HIST1H2BF|8343|histone cluster 1, H2bf##BC096120|HIST1H2BF|8343|histone cluster 1, H2bf##BC096123|HIST1H2BF|8343|histone cluster 1, H2bf##NM_003522|HIST1H2BF|8343|histone cluster 1, H2bf	0.0	0.0	
chr1	45940763	45940883	reg1003300.p1	7.992	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-134923	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-134950	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-134994	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	16010	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	25116	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	46755	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	2.187619	0.0	denovo_WM_7:-79:0.266
chr1	90247014	90247194	reg1004275.p3	7.992	+	TSC_hg19_v1_chr1_+_90098707 AK127881 AB081509 BC103929 BC113973	-148340	+	NM_032270 TSC_hg19_v1_chr1_+_90098643	-148459	+	TSC_hg19_v1_chr1_+_90098630 BC036122	-148471	+	TSC_hg19_v1_chr1_+_90286586 NM_001134479	39423	+	TSC_hg19_v1_chr1_+_90286603 AK092238 AX747423	39495	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	40354	+	AK127881|LRRC8C|84230|leucine rich repeat containing 8 family, member C##AB081509|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC103929|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC113973|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_032270|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC036122|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_001134479|LRRC8D|55144|leucine rich repeat containing 8 family, member D##AK092238|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D	0.989512	0.0	denovo_WM_7:8:0.329	denovo_WM_7:10:0.328
chr1	150690777	150690902	reg1003223.p1	7.991	+	AJ296153 TSC_hg19_v1_chr1_-_150669631 AK300635 AK315594 NM_018178	-21254	-	TSC_hg19_v1_chr1_-_150602089 NM_004436 NM_207042 NM_207043 NM_207044 NM_207168	-88746	-	TSC_hg19_v1_chr1_-_150602054 AF157509 AF157510 AF067170 CR749580 BC068544 X99906 AK057673 AK001981	-88780	-	AK098633 BC033014 AK097390 BC047406 AL136755 AY626344 NM_001199829 NM_032132	2503	-	TSC_hg19_v1_chr1_-_150738233 BC002642	47393	-	TSC_hg19_v1_chr1_-_150738255 AK301472 AK314482	47429	-	AJ296153|GOLPH3L|55204|golgi phosphoprotein 3-like##AK300635|GOLPH3L|55204|golgi phosphoprotein 3-like##AK315594|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_018178|GOLPH3L|55204|golgi phosphoprotein 3-like##NM_004436|ENSA|2029|endosulfine alpha##NM_207042|ENSA|2029|endosulfine alpha##NM_207043|ENSA|2029|endosulfine alpha##NM_207044|ENSA|2029|endosulfine alpha##NM_207168|ENSA|2029|endosulfine alpha##AF157509|ENSA|2029|endosulfine alpha##AF157510|ENSA|2029|endosulfine alpha##AF067170|ENSA|2029|endosulfine alpha##CR749580|ENSA|2029|endosulfine alpha##BC068544|ENSA|2029|endosulfine alpha##X99906|ENSA|2029|endosulfine alpha##AK057673|ENSA|2029|endosulfine alpha##AK001981|ENSA|2029|endosulfine alpha##AK098633|HORMAD1|84072|HORMA domain containing 1##BC033014|HORMAD1|84072|HORMA domain containing 1##AK097390|HORMAD1|84072|HORMA domain containing 1##BC047406|HORMAD1|84072|HORMA domain containing 1##AL136755|HORMAD1|84072|HORMA domain containing 1##AY626344|HORMAD1|84072|HORMA domain containing 1##NM_001199829|HORMAD1|84072|HORMA domain containing 1##NM_032132|HORMAD1|84072|HORMA domain containing 1##BC002642|CTSS|1520|cathepsin S##AK301472|CTSS|1520|cathepsin S##AK314482|CTSS|1520|cathepsin S	0.995508	0.0	
chr19	11678423	11678532	reg1001230.p1	7.991	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-8444	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-28818	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-38520	-	X14618 TSC_hg19_v1_chr19_-_11688461	9974	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	10013	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	10053	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.997294	0.0	
chr10	12306617	12306797	reg1001405.p3	7.990	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-68481	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-68508	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-68525	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	84868	+	TSC_hg19_v1_chr10_+_12391709 BC035745	85010	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	85070	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	0.0	0.0	
chr3	57026371	57026524	reg1004329.p1	7.989	+	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	-190536	-	AK293864 AB209661 NM_001128616	-216778	-	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-309240	-	AY221117 NM_181727 BC126274 BC136498	68056	+	AF433662 AK302493 NM_001128615	86866	-	AF458067 TSC_hg19_v1_chr3_-_57199347	172886	-	AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF458067|IL17RD|54756|interleukin 17 receptor D	2.111169	0.0	denovo_WM_7:-35:0.230
chr16	87808328	87808447	reg1002757.p1	7.987	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-8817	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-8872	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-171677	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	94688	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	161760	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	176781	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.983051	0.0	denovo_WM_7:-71:0.792
chr20	5823822	5824002	reg1003530.p1	7.987	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	-92846	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-232325	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-528876	-	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	68214	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	107211	-	AJ439063 NM_032485 NM_182802 AK297806 BC101054 BC101055 BC101056 BC101057 BC080656 AY158211 BC005170 AK314654	107571	+	AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AJ439063|MCM8|84515|minichromosome maintenance complex component 8##NM_032485|MCM8|84515|minichromosome maintenance complex component 8##NM_182802|MCM8|84515|minichromosome maintenance complex component 8##AK297806|MCM8|84515|minichromosome maintenance complex component 8##BC101054|MCM8|84515|minichromosome maintenance complex component 8##BC101055|MCM8|84515|minichromosome maintenance complex component 8##BC101056|MCM8|84515|minichromosome maintenance complex component 8##BC101057|MCM8|84515|minichromosome maintenance complex component 8##BC080656|MCM8|84515|minichromosome maintenance complex component 8##AY158211|MCM8|84515|minichromosome maintenance complex component 8##BC005170|MCM8|84515|minichromosome maintenance complex component 8##AK314654|MCM8|84515|minichromosome maintenance complex component 8	2.085117	0.0	denovo_WM_7:32:0.742	denovo_WM_7:50:0.351	denovo_WM_7:89:0.422	denovo_WM_7:90:0.203
chr8	103543116	103543274	reg1004303.p2	7.986	+	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	-118284	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-292022	-	NM_001040630	-406061	-	NM_024410 AK315276 BC104456 BC104457	20666	+	BC011538 NM_001032282 S81439	122897	-	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	124737	-	AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001040630|NCALD|83988|neurocalcin delta##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10	0.047496	0.0	
chr13	113514233	113514387	reg1003376.p1	7.984	+	TSC_hg19_v1_chr13_+_113344493 NM_015205 NM_032189	-169731	+	TSC_hg19_v1_chr13_-_113344130 AK057085	-170204	-	AK129953 NM_207440	-212953	+	TSC_hg19_v1_chr13_+_113622764 AB002360	108475	+	TSC_hg19_v1_chr13_+_113623680 AK315969 NM_001112732 AK295670	109285	+	TSC_hg19_v1_chr13_+_113633625 AK307867	119329	+	NM_015205|ATP11A|23250|ATPase, class VI, type 11A##NM_032189|ATP11A|23250|ATPase, class VI, type 11A##AK057085|LOC440149|440149|uncharacterized LOC440149##AK129953|C13orf35|400165|chromosome 13 open reading frame 35##NM_207440|C13orf35|400165|chromosome 13 open reading frame 35##AB002360|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK315969|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##NM_001112732|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK295670|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK307867|MCF2L|23263|MCF.2 cell line derived transforming sequence-like	0.999016	0.0	denovo_WM_7:52:0.523	denovo_WM_7:53:0.203	denovo_WM_7:55:0.202
chr13	37574495	37574624	reg1002072.p1	7.984	+	TSC_hg19_v1_chr13_-_37573478 AK299085 NM_001142364 NM_013338	-1070	-	CU680348 TSC_hg19_v1_chr13_-_37573465 AF161498 BC012531 AF183413 AK299126	-1106	-	TSC_hg19_v1_chr13_-_37494376 BC067766 NM_001127217 NM_005905	-80170	-	NM_181503	118	+	BC020773 TSC_hg19_v1_chr13_+_37574924 AF279901 AB463623 DQ893134 DQ896414	370	+	AK292376 TSC_hg19_v1_chr13_-_37633791 AF445026 AF093250 AK225376 AJ130894 BC001145 AK304227 BC030686 NM_001014286 NM_017569	59154	-	AK299085|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##NM_001142364|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##NM_013338|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##AF161498|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##BC012531|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##AF183413|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##AK299126|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##BC067766|SMAD9|4093|SMAD family member 9##NM_001127217|SMAD9|4093|SMAD family member 9##NM_005905|SMAD9|4093|SMAD family member 9##NM_181503|EXOSC8|11340|exosome component 8##BC020773|EXOSC8|11340|exosome component 8##AF279901|EXOSC8|11340|exosome component 8##DQ893134|EXOSC8|11340|exosome component 8##DQ896414|EXOSC8|11340|exosome component 8##AK292376|FAM48A|55578|family with sequence similarity 48, member A##AF445026|FAM48A|55578|family with sequence similarity 48, member A##AF093250|FAM48A|55578|family with sequence similarity 48, member A##AK225376|FAM48A|55578|family with sequence similarity 48, member A##AJ130894|FAM48A|55578|family with sequence similarity 48, member A##BC001145|FAM48A|55578|family with sequence similarity 48, member A##AK304227|FAM48A|55578|family with sequence similarity 48, member A##BC030686|FAM48A|55578|family with sequence similarity 48, member A##NM_001014286|FAM48A|55578|family with sequence similarity 48, member A##NM_017569|FAM48A|55578|family with sequence similarity 48, member A	0.999297	0.0	
chr2	237966489	237966611	reg1002483.p1	7.984	+	NM_020311 TSC_hg19_v1_chr2_+_237478467 AK023507 AK291659 AF030297	-488122	+	BC043504 NM_024726 AK294105 BC028699	-550418	-	NM_212556 BX647589	-793556	-	BC036499 NM_006710 NM_198189	27468	+	TSC_hg19_v1_chr2_-_237994424 AK056246	27887	-	TSC_hg19_v1_chr2_+_237994528 AK294078 AK313437	27970	+	NM_020311|CXCR7|57007|chemokine (C-X-C motif) receptor 7##AK291659|CXCR7|57007|chemokine (C-X-C motif) receptor 7##AF030297|CXCR7|57007|chemokine (C-X-C motif) receptor 7##BC043504|IQCA1|79781|IQ motif containing with AAA domain 1##NM_024726|IQCA1|79781|IQ motif containing with AAA domain 1##AK294105|IQCA1|79781|IQ motif containing with AAA domain 1##BC028699|IQCA1|79781|IQ motif containing with AAA domain 1##NM_212556|ASB18|401036|ankyrin repeat and SOCS box containing 18##BX647589|ASB18|401036|ankyrin repeat and SOCS box containing 18##BC036499|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##NM_006710|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##NM_198189|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##AK056246|LOC401037|401037|uncharacterized LOC401037##AK294078|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##AK313437|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)	0.993906	0.0	denovo_WM_7:-34:0.981
chr14	35891733	35891867	reg1004896.p1	7.983	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	-17876	-	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	-130157	+	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	-130229	+	AF260323 NM_032594 BC130377 BC130379 TSC_hg19_v1_chr14_+_36003369 AB037912 AK096639	111509	+	AB511280 BC150596 TSC_hg19_v1_chr14_-_36278252	386347	-	TSC_hg19_v1_chr14_-_36278433 AY596970 AY596971 NM_014990 NM_194301	386595	-	BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AF260323|INSM2|84684|insulinoma-associated 2##NM_032594|INSM2|84684|insulinoma-associated 2##BC130377|INSM2|84684|insulinoma-associated 2##BC130379|INSM2|84684|insulinoma-associated 2##AB037912|INSM2|84684|insulinoma-associated 2##AK096639|INSM2|84684|insulinoma-associated 2##AB511280|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BC150596|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596970|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596971|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_014990|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_194301|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)	0.996647	0.95723	CTCF.p2:-19:0.957	denovo_WM_7:55:0.217	denovo_WM_7:56:0.641
chr14	74239214	74239352	reg1003721.p2	7.983	+	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-12318	-	BC015668 TSC_hg19_v1_chr14_-_74226640	-12645	-	CR457112 BC039577 AK290980 TSC_hg19_v1_chr14_-_74181085 AF320308 BC007712 NM_006029	-58522	-	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	14636	-	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	79306	+	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	114035	+	AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##BC015668|C14orf43|91748|chromosome 14 open reading frame 43##CR457112|PNMA1|9240|paraneoplastic antigen MA1##BC039577|PNMA1|9240|paraneoplastic antigen MA1##AK290980|PNMA1|9240|paraneoplastic antigen MA1##AF320308|PNMA1|9240|paraneoplastic antigen MA1##BC007712|PNMA1|9240|paraneoplastic antigen MA1##NM_006029|PNMA1|9240|paraneoplastic antigen MA1##NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410	1.716005	0.0	denovo_WM_7:12:0.632	denovo_WM_7:83:0.722
chr16	70442797	70442977	reg1003072.p2	7.982	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-62059	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-109739	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-109811	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	30094	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	45612	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	59953	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	2.750699	0.0	denovo_WM_7:-48:0.234
chr6	132816713	132816893	reg1005612.p2	7.982	+	CU676314 DQ892164 DQ895358 TSC_hg19_v1_chr6_-_132722615 AY359094 BC018756 NM_015529	-94187	-	BT019794 BT019795 CR541734 CR541759 AB463538 AY550024 AY395801 M92934 X78947 BC087839 TSC_hg19_v1_chr6_-_132272513 AK125220 AK290884 AK315207 AK092280 NM_001901	-544389	-	TSC_hg19_v1_chr6_+_132129249 BC033008 AK314870	-687542	+	U77942 TSC_hg19_v1_chr6_-_132834222 BC011975 AK294911 AK301464 NM_003569	17447	-	BC069083 NM_175057 AY183469	42624	+	AB529265 AY183468 BC069166 NM_053278	57027	+	DQ892164|MOXD1|26002|monooxygenase, DBH-like 1##DQ895358|MOXD1|26002|monooxygenase, DBH-like 1##AY359094|MOXD1|26002|monooxygenase, DBH-like 1##BC018756|MOXD1|26002|monooxygenase, DBH-like 1##NM_015529|MOXD1|26002|monooxygenase, DBH-like 1##BT019794|CTGF|1490|connective tissue growth factor##BT019795|CTGF|1490|connective tissue growth factor##CR541734|CTGF|1490|connective tissue growth factor##CR541759|CTGF|1490|connective tissue growth factor##AY550024|CTGF|1490|connective tissue growth factor##AY395801|CTGF|1490|connective tissue growth factor##M92934|CTGF|1490|connective tissue growth factor##X78947|CTGF|1490|connective tissue growth factor##BC087839|CTGF|1490|connective tissue growth factor##AK125220|CTGF|1490|connective tissue growth factor##AK290884|CTGF|1490|connective tissue growth factor##AK315207|CTGF|1490|connective tissue growth factor##AK092280|CTGF|1490|connective tissue growth factor##NM_001901|CTGF|1490|connective tissue growth factor##BC033008|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##AK314870|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##U77942|STX7|8417|syntaxin 7##BC011975|STX7|8417|syntaxin 7##AK294911|STX7|8417|syntaxin 7##AK301464|STX7|8417|syntaxin 7##NM_003569|STX7|8417|syntaxin 7##BC069083|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##NM_175057|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##AY183469|TAAR9|134860|trace amine associated receptor 9 (gene/pseudogene)##AY183468|TAAR8|83551|trace amine associated receptor 8##BC069166|TAAR8|83551|trace amine associated receptor 8##NM_053278|TAAR8|83551|trace amine associated receptor 8	0.0	0.0	
chr17	34083415	34083543	reg1004115.p1	7.981	+	AF508784 AF508785 NM_139285	-3583	-	AK122652 NM_033315 TSC_hg19_v1_chr17_+_34058691 BC041133	-24762	+	TSC_hg19_v1_chr17_+_33914357 BC006201 CR749392 AK292531	-169015	+	NM_145272 BC021727 AB528807 AY557347	4458	+	AF219624 BC011774 AY358987 TSC_hg19_v1_chr17_-_34122596 BC002631 AF330002 NM_001032278 NM_024302 AK122604	39149	-	TSC_hg19_v1_chr17_+_34136487 BC048985 AK304520 AK307637 AK314194 BC030591 NM_003487 NM_139215 U51334 AK313223 BC046099 X98893	53030	+	AF508784|GAS2L2|246176|growth arrest-specific 2 like 2##AF508785|GAS2L2|246176|growth arrest-specific 2 like 2##NM_139285|GAS2L2|246176|growth arrest-specific 2 like 2##AK122652|RASL10B|91608|RAS-like, family 10, member B##NM_033315|RASL10B|91608|RAS-like, family 10, member B##BC041133|RASL10B|91608|RAS-like, family 10, member B##BC006201|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##CR749392|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK292531|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##NM_145272|C17orf50|146853|chromosome 17 open reading frame 50##BC021727|C17orf50|146853|chromosome 17 open reading frame 50##AY557347|C17orf50|146853|chromosome 17 open reading frame 50##AF219624|MMP28|79148|matrix metallopeptidase 28##BC011774|MMP28|79148|matrix metallopeptidase 28##AY358987|MMP28|79148|matrix metallopeptidase 28##BC002631|MMP28|79148|matrix metallopeptidase 28##AF330002|MMP28|79148|matrix metallopeptidase 28##NM_001032278|MMP28|79148|matrix metallopeptidase 28##NM_024302|MMP28|79148|matrix metallopeptidase 28##AK122604|MMP28|79148|matrix metallopeptidase 28##BC048985|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK304520|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK307637|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK314194|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##BC030591|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##NM_003487|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##NM_139215|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##U51334|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK313223|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##BC046099|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##X98893|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa	0.994935	0.0	
chr15	57592398	57592505	reg1003662.p2	7.980	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	-80784	+	TSC_hg19_v1_chr15_+_57210977 M83233	-381451	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-381549	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	76266	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	291714	+	TSC_hg19_v1_chr15_+_57998911 AY339380 AY341344 NM_001018102 NM_015532 AK074767 AK074955	406435	+	AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1##AY339380|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##AY341344|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##NM_001018102|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##NM_015532|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##AK074767|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M##AK074955|POLR2M|81488|polymerase (RNA) II (DNA directed) polypeptide M	0.991743	0.0	denovo_WM_7:46:0.331	denovo_WM_7:47:0.331	denovo_WM_7:48:0.331
chr1	24525939	24526062	reg1003154.p1	7.979	+	AF439325 AY129151 AY129152 AY129153 AB590083 AK160364 AJ534330 AJ534331 BC101407 BC101408 BC101975 BC139722 NM_170743 NM_173064 NM_173065 TSC_hg19_v1_chr1_-_24513772 BC140872	-12225	-	AB590595 CU688622 AF286095 TSC_hg19_v1_chr1_-_24469610 AK226001 BC029273 BC014096 AK308522 AK292204 AK313971 NM_021258	-56328	-	BX647453 BX647644 BX647455 NM_152372 BC067101	-87351	-	NM_198173 NM_198174 TSC_hg19_v1_chr1_+_24645846	119828	+	AK074386 TSC_hg19_v1_chr1_+_24645958 AK315164 BC036890 NM_001195010	119984	+	AY231160 AY231161 NM_021180	123529	+	AF439325|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AY129151|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AY129152|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AY129153|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AK160364|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AJ534330|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AJ534331|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##BC101407|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##BC101408|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##BC101975|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##BC139722|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##NM_170743|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##NM_173064|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##NM_173065|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##BC140872|IL28RA|163702|interleukin 28 receptor, alpha (interferon, lambda receptor)##AF286095|IL22RA1|58985|interleukin 22 receptor, alpha 1##AK226001|IL22RA1|58985|interleukin 22 receptor, alpha 1##BC029273|IL22RA1|58985|interleukin 22 receptor, alpha 1##BC014096|IL22RA1|58985|interleukin 22 receptor, alpha 1##AK308522|IL22RA1|58985|interleukin 22 receptor, alpha 1##AK292204|IL22RA1|58985|interleukin 22 receptor, alpha 1##AK313971|IL22RA1|58985|interleukin 22 receptor, alpha 1##NM_021258|IL22RA1|58985|interleukin 22 receptor, alpha 1##BX647453|MYOM3|127294|myomesin family, member 3##BX647644|MYOM3|127294|myomesin family, member 3##BX647455|MYOM3|127294|myomesin family, member 3##NM_152372|MYOM3|127294|myomesin family, member 3##BC067101|MYOM3|127294|myomesin family, member 3##NM_198173|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_198174|GRHL3|57822|grainyhead-like 3 (Drosophila)##AK074386|GRHL3|57822|grainyhead-like 3 (Drosophila)##AK315164|GRHL3|57822|grainyhead-like 3 (Drosophila)##BC036890|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_001195010|GRHL3|57822|grainyhead-like 3 (Drosophila)##AY231160|GRHL3|57822|grainyhead-like 3 (Drosophila)##AY231161|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_021180|GRHL3|57822|grainyhead-like 3 (Drosophila)	0.929585	0.942038	denovo_WM_7:19:0.910	CTCF.p2:-54:0.942
chr7	121170505	121170685	reg1001268.p1	7.978	+	TSC_hg19_v1_chr7_-_121036363 AK292731 AK290682 BC068526 NM_001040020 NM_014888	-134181	-	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	-134258	-	AF169963 NM_057168	-201506	+	NM_001206838 NM_001206839 NM_002851 TSC_hg19_v1_chr7_+_121513164	342566	+	TSC_hg19_v1_chr7_+_121513214 U88967	342626	+	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	613694	-	AK292731|FAM3C|10447|family with sequence similarity 3, member C##AK290682|FAM3C|10447|family with sequence similarity 3, member C##BC068526|FAM3C|10447|family with sequence similarity 3, member C##NM_001040020|FAM3C|10447|family with sequence similarity 3, member C##NM_014888|FAM3C|10447|family with sequence similarity 3, member C##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C##AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_001206838|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_001206839|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_002851|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase	0.0	0.0	
chr9	125997171	125997351	reg1002356.p2	7.978	+	TSC_hg19_v1_chr9_-_125941308 BC002693	-55941	-	TSC_hg19_v1_chr9_-_125874882 AK025814	-122362	-	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-200416	+	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	33559	-	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	33627	-	NM_173689 AK123000 DQ426866 AY720432	121232	+	BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)	0.993516	0.0	denovo_WM_7:-37:0.454	denovo_WM_7:-38:0.454
chr5	158025117	158025243	reg1004039.p2	7.975	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-739090	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-840800	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-854440	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	501277	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	501562	-	AK304228 NM_001199382	609468	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	1.208997	0.0	
chr9	140221284	140221464	reg1004353.p2	7.975	+	BC053618 NM_001004354 TSC_hg19_v1_chr9_-_140196724	-24654	-	TSC_hg19_v1_chr9_+_140172277 AK000252 NM_017723	-49089	+	TSC_hg19_v1_chr9_+_140149888 AF464935 AB384577 AM393289	-71451	+	BC065002 TSC_hg19_v1_chr9_-_140317615 BC110879 AK000440 AK094438 BC039252 BC037355	96236	-	TSC_hg19_v1_chr9_-_140317652 BC033079 BC069205	96302	-	NM_017820 TSC_hg19_v1_chr9_-_140317724	96344	-	BC053618|NRARP|441478|NOTCH-regulated ankyrin repeat protein##NM_001004354|NRARP|441478|NOTCH-regulated ankyrin repeat protein##AK000252|C9orf167|54863|chromosome 9 open reading frame 167##NM_017723|C9orf167|54863|chromosome 9 open reading frame 167##AF464935|COBRA1|25920|cofactor of BRCA1##AM393289|COBRA1|25920|cofactor of BRCA1##BC065002|EXD3|54932|exonuclease 3'-5' domain containing 3##BC110879|EXD3|54932|exonuclease 3'-5' domain containing 3##AK000440|EXD3|54932|exonuclease 3'-5' domain containing 3##AK094438|EXD3|54932|exonuclease 3'-5' domain containing 3##BC039252|EXD3|54932|exonuclease 3'-5' domain containing 3##BC037355|EXD3|54932|exonuclease 3'-5' domain containing 3##BC033079|EXD3|54932|exonuclease 3'-5' domain containing 3##BC069205|EXD3|54932|exonuclease 3'-5' domain containing 3##NM_017820|EXD3|54932|exonuclease 3'-5' domain containing 3	0.649742	0.0	denovo_WM_7:8:0.479
chr5	153895127	153895225	reg1002560.p1	7.973	+	TSC_hg19_v1_chr5_-_153857823 AF061756 NM_004821	-37354	-	TSC_hg19_v1_chr5_-_153857790 BC021190	-37388	-	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	-69566	+	BC001460 NM_015315 CU674716	197297	+	TSC_hg19_v1_chr5_+_154134891 AB018274	239719	+	TSC_hg19_v1_chr5_+_154135038 AK091465 AX747001	239905	+	AF061756|HAND1|9421|heart and neural crest derivatives expressed 1##NM_004821|HAND1|9421|heart and neural crest derivatives expressed 1##BC021190|HAND1|9421|heart and neural crest derivatives expressed 1##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like##BC001460|LARP1|23367|La ribonucleoprotein domain family, member 1##NM_015315|LARP1|23367|La ribonucleoprotein domain family, member 1##AB018274|LARP1|23367|La ribonucleoprotein domain family, member 1##AK091465|LARP1|23367|La ribonucleoprotein domain family, member 1	1.982605	0.0	denovo_WM_7:-26:0.816	denovo_WM_7:-43:0.986
chr15	94815879	94816028	reg1003539.p2	7.971	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-41095	+	AB463222 AM392685 BC146682 AK074980 BC140838 BC151132 AL136826 TSC_hg19_v1_chr15_-_93632430 AK074910 AK291365 NM_020211	-1183600	-	NM_001166287	-1184202	-	NM_001159643 NM_018349 AY656717 BC131527	25508	+	NM_001159644 BC025708 BC111024 AK002037	83356	+	TSC_hg19_v1_chr15_-_95870310 BC040875	1054366	-	AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##AM392685|RGMA|56963|RGM domain family, member A##BC146682|RGMA|56963|RGM domain family, member A##AK074980|RGMA|56963|RGM domain family, member A##BC140838|RGMA|56963|RGM domain family, member A##BC151132|RGMA|56963|RGM domain family, member A##AL136826|RGMA|56963|RGM domain family, member A##AK074910|RGMA|56963|RGM domain family, member A##NM_020211|RGMA|56963|RGM domain family, member A##NM_001166287|RGMA|56963|RGM domain family, member A##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456	0.0	0.0	
chr8	30581920	30582065	reg1004004.p2	7.968	+	S67861 TSC_hg19_v1_chr8_-_30515718 X63469 BC030572 BC001775 NM_002095	-66256	-	NM_001206847	-85876	+	NM_001008710 NM_001008711 NM_001008712 NM_006867 AK304858 D84107 D84108 D84109 D84110 TSC_hg19_v1_chr8_+_30242056 BC003608	-339983	+	BC035691 TSC_hg19_v1_chr8_-_30585320 X15722 AB519179 AB519180 AB519181 AF228704 CU686724	3294	-	BC069244 TSC_hg19_v1_chr8_-_30585478 NM_000637 NM_001195102 NM_001195103 NM_001195104	3474	-	TSC_hg19_v1_chr8_+_30601674 NM_005671 AK296600 BC020694 D83767 CU676648 AY302140	19694	+	S67861|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##X63469|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC030572|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC001775|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_002095|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_001206847|LOC100507341|100507341|uncharacterized LOC100507341##NM_001008710|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008711|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008712|RBPMS|11030|RNA binding protein with multiple splicing##NM_006867|RBPMS|11030|RNA binding protein with multiple splicing##AK304858|RBPMS|11030|RNA binding protein with multiple splicing##D84107|RBPMS|11030|RNA binding protein with multiple splicing##D84108|RBPMS|11030|RNA binding protein with multiple splicing##D84109|RBPMS|11030|RNA binding protein with multiple splicing##D84110|RBPMS|11030|RNA binding protein with multiple splicing##BC003608|RBPMS|11030|RNA binding protein with multiple splicing##BC035691|GSR|2936|glutathione reductase##X15722|GSR|2936|glutathione reductase##AB519179|GSR|2936|glutathione reductase##AB519180|GSR|2936|glutathione reductase##AB519181|GSR|2936|glutathione reductase##AF228704|GSR|2936|glutathione reductase##BC069244|GSR|2936|glutathione reductase##NM_000637|GSR|2936|glutathione reductase##NM_001195102|GSR|2936|glutathione reductase##NM_001195103|GSR|2936|glutathione reductase##NM_001195104|GSR|2936|glutathione reductase##NM_005671|UBXN8|7993|UBX domain protein 8##AK296600|UBXN8|7993|UBX domain protein 8##BC020694|UBXN8|7993|UBX domain protein 8##D83767|UBXN8|7993|UBX domain protein 8##AY302140|UBXN8|7993|UBX domain protein 8	0.998839	0.0	
chr2	47615563	47615705	reg1004918.p1	7.967	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	-19089	+	NM_002354 TSC_hg19_v1_chr2_+_47596376	-19292	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-211925	-	TSC_hg19_v1_chr2_+_47630218 AK304496	14570	+	TSC_hg19_v1_chr2_+_47630289 BC012599 NM_000251 U04045 AK222860 L47574 L47575 L47576 L47577 L47578 L47579 L47580 L47581 L47582 L47583	14634	+	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	14683	+	AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC012599|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##NM_000251|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U04045|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK222860|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47574|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47575|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47576|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47577|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47578|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47579|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47580|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47581|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47582|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47583|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	0.986615	0.77689	CTCF.p2:-27:0.777	denovo_WM_7:56:0.539	denovo_WM_7:57:0.348
chr10	82233372	82233546	reg1004260.p2	7.966	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-19355	+	TSC_hg19_v1_chr10_+_82214071 AF311903	-19388	+	AK074558 AK295321 AL136638 TSC_hg19_v1_chr10_+_82214066	-19391	+	AK123885 NM_207372	64198	+	AK123978 NM_001145719	67115	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	1401623	+	BC002920|TSPAN14|81619|tetraspanin 14##AF311903|TSPAN14|81619|tetraspanin 14##AK074558|TSPAN14|81619|tetraspanin 14##AK295321|TSPAN14|81619|tetraspanin 14##AL136638|TSPAN14|81619|tetraspanin 14##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3	1.992612	0.0	denovo_WM_7:-8:0.459	denovo_WM_7:-9:0.459	denovo_WM_7:16:0.763
chr15	30916636	30916796	reg1003278.p2	7.966	+	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	-231004	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	-802093	-	AK304758 TSC_hg19_v1_chr15_-_30114336	-802374	-	TSC_hg19_v1_chr15_+_30918372 BC071990	1670	+	BC105788 NM_001039841	2162	+	BC047882 NM_001146095 NM_001146094 NM_001146096 NM_014967 TSC_hg19_v1_chr15_+_31196088 BX647391 AK290987	279358	+	BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC047882|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146095|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146094|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146096|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_014967|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BX647391|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK290987|FAN1|22909|FANCD2/FANCI-associated nuclease 1	1.971328	0.0	
chr3	98274693	98274848	reg1004597.p1	7.966	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-23961	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-32904	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-33005	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	37649	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	176475	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	176817	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	1.967743	0.0	denovo_WM_7:-40:0.952	denovo_WM_7:-59:0.539	denovo_WM_7:-60:0.202
chr9	34053098	34053216	reg1002954.p1	7.966	+	TSC_hg19_v1_chr9_-_34048895 BC111409 AK302335 NM_018449	-4241	-	AB209911 TSC_hg19_v1_chr9_-_34048886 AK302754 AK294952 AK299183 AK303493 CR933678	-4280	-	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	-235485	+	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	73429	-	BC063823 TSC_hg19_v1_chr9_-_34126702 AB067479 DQ518909	73538	-	TSC_hg19_v1_chr9_-_34126703 NM_015397	73579	-	BC111409|UBAP2|55833|ubiquitin associated protein 2##AK302335|UBAP2|55833|ubiquitin associated protein 2##NM_018449|UBAP2|55833|ubiquitin associated protein 2##AB209911|UBAP2|55833|ubiquitin associated protein 2##AK302754|UBAP2|55833|ubiquitin associated protein 2##AK294952|UBAP2|55833|ubiquitin associated protein 2##AK299183|UBAP2|55833|ubiquitin associated protein 2##AK303493|UBAP2|55833|ubiquitin associated protein 2##CR933678|UBAP2|55833|ubiquitin associated protein 2##AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12##BC063823|DCAF12|25853|DDB1 and CUL4 associated factor 12##AB067479|DCAF12|25853|DDB1 and CUL4 associated factor 12##DQ518909|DCAF12|25853|DDB1 and CUL4 associated factor 12##NM_015397|DCAF12|25853|DDB1 and CUL4 associated factor 12	0.994629	0.0	
chr6	11800904	11801025	reg1004378.p2	7.964	+	NM_001143948 NM_032744	-21685	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-262466	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-418424	-	NM_002114	211759	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	489629	+	TSC_hg19_v1_chr6_+_12514301 D28417	713338	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.888253	0.0	denovo_WM_7:-31:0.369	denovo_WM_7:-32:0.225	denovo_WM_7:-34:0.223
chr1	235017290	235017415	reg1003702.p1	7.963	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-121578	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-272106	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-273494	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	274737	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	274879	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	307211	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.994344	0.0	
chr3	148985499	148985626	reg1003112.p1	7.962	+	BC070304 NM_000096	-45755	-	AY033141 NM_032383 TSC_hg19_v1_chr3_+_148847453 AK291631 AK055245 BC040359 AK298478 CU691866 DQ891178 DQ894360	-138122	+	AB209052 EU446704 TSC_hg19_v1_chr3_-_148804298 AK291231 L34673 BC015498 BC005260 BC044659 BC014326 BC030976 NM_003071 NM_139048	-181300	-	NM_001184723 AK313400 BC014339 AL833134 NM_138786	65840	-	TSC_hg19_v1_chr3_-_149086887 X75684	101357	-	CR456953 CU679647 BC010166 TSC_hg19_v1_chr3_-_149095398	109804	-	BC070304|CP|1356|ceruloplasmin (ferroxidase)##NM_000096|CP|1356|ceruloplasmin (ferroxidase)##AY033141|HPS3|84343|Hermansky-Pudlak syndrome 3##NM_032383|HPS3|84343|Hermansky-Pudlak syndrome 3##AK291631|HPS3|84343|Hermansky-Pudlak syndrome 3##AK055245|HPS3|84343|Hermansky-Pudlak syndrome 3##BC040359|HPS3|84343|Hermansky-Pudlak syndrome 3##AK298478|HPS3|84343|Hermansky-Pudlak syndrome 3##DQ891178|HPS3|84343|Hermansky-Pudlak syndrome 3##DQ894360|HPS3|84343|Hermansky-Pudlak syndrome 3##AB209052|HLTF|6596|helicase-like transcription factor##EU446704|HLTF|6596|helicase-like transcription factor##AK291231|HLTF|6596|helicase-like transcription factor##L34673|HLTF|6596|helicase-like transcription factor##BC015498|HLTF|6596|helicase-like transcription factor##BC005260|HLTF|6596|helicase-like transcription factor##BC044659|HLTF|6596|helicase-like transcription factor##BC014326|HLTF|6596|helicase-like transcription factor##BC030976|HLTF|6596|helicase-like transcription factor##NM_003071|HLTF|6596|helicase-like transcription factor##NM_139048|HLTF|6596|helicase-like transcription factor##NM_001184723|TM4SF18|116441|transmembrane 4 L six family member 18##AK313400|TM4SF18|116441|transmembrane 4 L six family member 18##BC014339|TM4SF18|116441|transmembrane 4 L six family member 18##AL833134|TM4SF18|116441|transmembrane 4 L six family member 18##NM_138786|TM4SF18|116441|transmembrane 4 L six family member 18##X75684|TM4SF1|4071|transmembrane 4 L six family member 1##CR456953|TM4SF1|4071|transmembrane 4 L six family member 1##BC010166|TM4SF1|4071|transmembrane 4 L six family member 1	0.996185	0.0	denovo_WM_7:41:0.535
chr6	21610778	21610958	reg1004101.p1	7.961	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-16496	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1076145	+	CR749285 NM_001243076	-1206835	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	55791	+	BC015850 NM_000948	686861	-	X54394 X54393 GQ305133 M58594 NM_001163558	692179	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.0	0.0	
chr9	46313175	46313297	reg1004694.p1	7.961	+	TSC_hg19_v1_chr9_+_45441926 BC006438	-871310	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-2628393	+	NM_001145196	-2682507	-	BC040528 NM_001113541 NM_015667	19196373	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	20144065	+	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	20145260	-	BC006438|LOC100132167|100132167|uncharacterized LOC100132167##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.999297	0.0	
chr5	93957593	93957758	reg1004381.p2	7.959	+	BC070332 AK299080 AK297452 CR936768 AL050298 NM_032290 BC054885 BC107571	-3302	+	TSC_hg19_v1_chr5_-_93954299 BX648338 BC035515 AK308195 NM_001145678 NM_173665	-3418	-	TSC_hg19_v1_chr5_-_93447341 AL136630 AK312930 AK295879 AK296683 AK296986 AK295127 NM_001163417 NM_001163418 NM_032042	-510355	-	AK025997 TSC_hg19_v1_chr5_-_94224607	266931	-	AY656716 AK058012 BC030005 AK057694 TSC_hg19_v1_chr5_-_94417350	459593	-	NM_001002796	459869	-	BC070332|ANKRD32|84250|ankyrin repeat domain 32##AK299080|ANKRD32|84250|ankyrin repeat domain 32##AK297452|ANKRD32|84250|ankyrin repeat domain 32##CR936768|ANKRD32|84250|ankyrin repeat domain 32##AL050298|ANKRD32|84250|ankyrin repeat domain 32##NM_032290|ANKRD32|84250|ankyrin repeat domain 32##BC054885|ANKRD32|84250|ankyrin repeat domain 32##BC107571|ANKRD32|84250|ankyrin repeat domain 32##BX648338|KIAA0825|285600|KIAA0825##BC035515|KIAA0825|285600|KIAA0825##AK308195|KIAA0825|285600|KIAA0825##NM_001145678|KIAA0825|285600|KIAA0825##NM_173665|KIAA0825|285600|KIAA0825##AL136630|FAM172A|83989|family with sequence similarity 172, member A##AK312930|FAM172A|83989|family with sequence similarity 172, member A##AK295879|FAM172A|83989|family with sequence similarity 172, member A##AK296683|FAM172A|83989|family with sequence similarity 172, member A##AK296986|FAM172A|83989|family with sequence similarity 172, member A##AK295127|FAM172A|83989|family with sequence similarity 172, member A##NM_001163417|FAM172A|83989|family with sequence similarity 172, member A##NM_001163418|FAM172A|83989|family with sequence similarity 172, member A##NM_032042|FAM172A|83989|family with sequence similarity 172, member A##AK025997|MCTP1|79772|multiple C2 domains, transmembrane 1##AY656716|MCTP1|79772|multiple C2 domains, transmembrane 1##AK058012|MCTP1|79772|multiple C2 domains, transmembrane 1##BC030005|MCTP1|79772|multiple C2 domains, transmembrane 1##AK057694|MCTP1|79772|multiple C2 domains, transmembrane 1##NM_001002796|MCTP1|79772|multiple C2 domains, transmembrane 1	0.0	0.0	
chr9	117328954	117329079	reg1004620.p2	7.959	+	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	-61286	-	AL110228 NM_001083885	-63543	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	-168265	-	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	21022	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	21091	+	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	44753	+	BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##AL110228|DFNB31|25861|deafness, autosomal recessive 31##NM_001083885|DFNB31|25861|deafness, autosomal recessive 31##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91	0.998858	0.0	denovo_WM_7:-27:0.314	denovo_WM_7:-28:0.314	denovo_WM_7:-29:0.314
chr16	10869115	10869289	reg1001904.p3	7.958	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-31498	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-80437	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-194712	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	43346	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	101910	+	BC071683 TSC_hg19_v1_chr16_-_11036171	166964	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.0	0.0	
chr1	710589	710729	reg1004827.p1	7.958	+	NM_001005221 NM_001005224 NM_001005277 BC137547 BC137568	-88617	-	BC137547 BC137568 NM_001005221 NM_001005224 NM_001005277	-343011	+	NM_001005484	-641569	+	TSC_hg19_v1_chr1_-_714015 BC006361	3358	-	TSC_hg19_v1_chr1_-_762903 AK026292 BC017762	52236	-	BC042880 TSC_hg19_v1_chr1_+_763038	52354	+	NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16##NM_001005484|OR4F5|79501|olfactory receptor, family 4, subfamily F, member 5##BC006361|LOC100288069|100288069|general transcription factor IIi pseudogene##AK026292|LINC00115|79854|long intergenic non-protein coding RNA 115##BC017762|LINC00115|79854|long intergenic non-protein coding RNA 115##BC042880|LOC643837|643837|uncharacterized LOC643837	1.989716	0.0	denovo_WM_7:38:0.449	denovo_WM_7:39:0.449	denovo_WM_7:-62:0.777
chr15	60861397	60861567	reg1004015.p2	7.956	+	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	-90208	-	AB587463 BC068065 BC009564 BC021114 BC052567 BC001388 BC013843 D00017 TSC_hg19_v1_chr15_-_60690186 AK222542 BX640598 AK297923 BC015834 BC023990 BC066955 BC093056 D28364 NM_001002857 NM_001002858 NM_001136015 NM_004039 AK309956 BC016774	-171321	-	TSC_hg19_v1_chr15_+_60296509 AK314075	-564933	+	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	23197	-	U04899 U04898 NM_002943 NM_134260	58203	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	659942	-	BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##BC068065|ANXA2|302|annexin A2##BC009564|ANXA2|302|annexin A2##BC021114|ANXA2|302|annexin A2##BC052567|ANXA2|302|annexin A2##BC001388|ANXA2|302|annexin A2##BC013843|ANXA2|302|annexin A2##D00017|ANXA2|302|annexin A2##AK222542|ANXA2|302|annexin A2##BX640598|ANXA2|302|annexin A2##AK297923|ANXA2|302|annexin A2##BC015834|ANXA2|302|annexin A2##BC023990|ANXA2|302|annexin A2##BC066955|ANXA2|302|annexin A2##BC093056|ANXA2|302|annexin A2##D28364|ANXA2|302|annexin A2##NM_001002857|ANXA2|302|annexin A2##NM_001002858|ANXA2|302|annexin A2##NM_001136015|ANXA2|302|annexin A2##NM_004039|ANXA2|302|annexin A2##BC016774|ANXA2|302|annexin A2##AK314075|FOXB1|27023|forkhead box B1##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A	1.076781	0.0	
chr10	13344462	13344574	reg1004215.p1	7.955	+	TSC_hg19_v1_chr10_-_13342064 AF023462 BC029512 AF112977 BC021011 NM_006214	-2422	-	TSC_hg19_v1_chr10_-_13342061 CR542055 DQ891007 DQ894185	-2469	-	NM_001037537	-2773	-	TSC_hg19_v1_chr10_-_13390036 AK301568 AK309829	45521	-	TSC_hg19_v1_chr10_-_13390214 U34044 BC063816 GU954545 GU954546 GU954547 GU954548 GU954549 NM_001195602 NM_001195604 NM_012247	45749	-	BC031618 AK097602 NM_001100912 NM_152751	200441	-	AF023462|PHYH|5264|phytanoyl-CoA 2-hydroxylase##BC029512|PHYH|5264|phytanoyl-CoA 2-hydroxylase##AF112977|PHYH|5264|phytanoyl-CoA 2-hydroxylase##BC021011|PHYH|5264|phytanoyl-CoA 2-hydroxylase##NM_006214|PHYH|5264|phytanoyl-CoA 2-hydroxylase##CR542055|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ891007|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ894185|PHYH|5264|phytanoyl-CoA 2-hydroxylase##NM_001037537|PHYH|5264|phytanoyl-CoA 2-hydroxylase##AK301568|SEPHS1|22929|selenophosphate synthetase 1##AK309829|SEPHS1|22929|selenophosphate synthetase 1##U34044|SEPHS1|22929|selenophosphate synthetase 1##BC063816|SEPHS1|22929|selenophosphate synthetase 1##GU954545|SEPHS1|22929|selenophosphate synthetase 1##GU954546|SEPHS1|22929|selenophosphate synthetase 1##GU954547|SEPHS1|22929|selenophosphate synthetase 1##GU954548|SEPHS1|22929|selenophosphate synthetase 1##GU954549|SEPHS1|22929|selenophosphate synthetase 1##NM_001195602|SEPHS1|22929|selenophosphate synthetase 1##NM_001195604|SEPHS1|22929|selenophosphate synthetase 1##NM_012247|SEPHS1|22929|selenophosphate synthetase 1##BC031618|BEND7|222389|BEN domain containing 7##AK097602|BEND7|222389|BEN domain containing 7##NM_001100912|BEND7|222389|BEN domain containing 7##NM_152751|BEND7|222389|BEN domain containing 7	0.0	0.010537	
chr5	55451000	55451134	reg1003461.p1	7.955	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-160304	-	NM_001242636 NM_001242639	-301918	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-303798	+	AK123389 NM_024669	78118	-	NM_005921	659832	+	TSC_hg19_v1_chr5_+_56111375 AK307828	660297	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.99951	0.0	denovo_WM_7:-10:0.425	denovo_WM_7:-11:0.425
chr19	2561885	2562025	reg1001993.p1	7.954	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-85717	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-104995	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-105019	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	140740	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	140787	-	AK124445 TSC_hg19_v1_chr19_-_2717420	155394	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.925899	0.085272	denovo_WM_7:-69:0.926
chr10	46205626	46205806	reg1003973.p1	7.953	+	TSC_hg19_v1_chr10_-_46168221 AK090704 AX746581 BC017591 AK292420 AK292469 AK314395 AK097924 NM_001128324 NM_174890 BC045587	-37502	-	TSC_hg19_v1_chr10_-_46090318 BC066988 NM_001002265 NM_145021	-115422	-	AK313340 BC025394 NM_001002266 AK307667	-174897	-	NM_001169106 NM_001169107 NM_015262 TSC_hg19_v1_chr10_+_46222703 AK291430 AB011164 BC150611 AK303048 AK293929 BC053887	16991	+	BC171820 BC171833 AF411132 NM_133446	137197	-	AB464105 AY704146 AY704149 AY704151 AY704155 BC093750 BC113473 BC143394 BC171725 NM_001042357 NM_001042389	414280	-	AK090704|ZFAND4|93550|zinc finger, AN1-type domain 4##BC017591|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292420|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292469|ZFAND4|93550|zinc finger, AN1-type domain 4##AK314395|ZFAND4|93550|zinc finger, AN1-type domain 4##AK097924|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_001128324|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_174890|ZFAND4|93550|zinc finger, AN1-type domain 4##BC045587|ZFAND4|93550|zinc finger, AN1-type domain 4##BC066988|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002265|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_145021|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##AK313340|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##BC025394|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002266|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##AK307667|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001169106|FAM21C|253725|family with sequence similarity 21, member C##NM_001169107|FAM21C|253725|family with sequence similarity 21, member C##NM_015262|FAM21C|253725|family with sequence similarity 21, member C##AK291430|FAM21C|253725|family with sequence similarity 21, member C##AB011164|FAM21C|253725|family with sequence similarity 21, member C##BC150611|FAM21C|253725|family with sequence similarity 21, member C##AK303048|FAM21C|253725|family with sequence similarity 21, member C##AK293929|FAM21C|253725|family with sequence similarity 21, member C##BC053887|FAM21C|253725|family with sequence similarity 21, member C##BC171833|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##AF411132|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##NM_133446|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##AY704146|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704149|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704151|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704155|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC093750|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC113473|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC143394|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC171725|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042357|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042389|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A	0.989476	0.0	denovo_WM_7:0:0.743
chr1	157753701	157753840	reg1003439.p2	7.953	+	CU686705 AK301113 AY043465 AF459633 AY358130 AK303549 BC069185 NM_030764	-6878	-	DQ892459 DQ895672 AY043466 AF416901 AF416902 AF416903 AF416904 AF416905 BC028933 BC013698 AK301257 AF459027 NM_052939 AK098122	-83243	-	AF329490 AF397452 BC143628 BC125173 BC125174 AF343659 AF343660 AF343661 NM_031282	-185969	-	CU689698 AF329488 BC021274 AK315748 AK096690 BC033690 AF459634 AY043464 NM_001159397 NM_001159398 NM_052938	36115	-	CU689660 DQ893615 DQ895298 BC033586 U82812 AF011429 AK292040 AY358494 NM_005894	57792	-	AY302131 NM_018240	209292	+	AK301113|FCRL2|79368|Fc receptor-like 2##AY043465|FCRL2|79368|Fc receptor-like 2##AF459633|FCRL2|79368|Fc receptor-like 2##AY358130|FCRL2|79368|Fc receptor-like 2##AK303549|FCRL2|79368|Fc receptor-like 2##BC069185|FCRL2|79368|Fc receptor-like 2##NM_030764|FCRL2|79368|Fc receptor-like 2##DQ892459|FCRL3|115352|Fc receptor-like 3##DQ895672|FCRL3|115352|Fc receptor-like 3##AY043466|FCRL3|115352|Fc receptor-like 3##AF416901|FCRL3|115352|Fc receptor-like 3##AF416902|FCRL3|115352|Fc receptor-like 3##AF416903|FCRL3|115352|Fc receptor-like 3##AF416904|FCRL3|115352|Fc receptor-like 3##AF416905|FCRL3|115352|Fc receptor-like 3##BC028933|FCRL3|115352|Fc receptor-like 3##BC013698|FCRL3|115352|Fc receptor-like 3##AK301257|FCRL3|115352|Fc receptor-like 3##AF459027|FCRL3|115352|Fc receptor-like 3##NM_052939|FCRL3|115352|Fc receptor-like 3##AK098122|FCRL3|115352|Fc receptor-like 3##AF329490|FCRL4|83417|Fc receptor-like 4##AF397452|FCRL4|83417|Fc receptor-like 4##BC143628|FCRL4|83417|Fc receptor-like 4##BC125173|FCRL4|83417|Fc receptor-like 4##BC125174|FCRL4|83417|Fc receptor-like 4##AF343659|FCRL4|83417|Fc receptor-like 4##AF343660|FCRL4|83417|Fc receptor-like 4##AF343661|FCRL4|83417|Fc receptor-like 4##NM_031282|FCRL4|83417|Fc receptor-like 4##AF329488|FCRL1|115350|Fc receptor-like 1##BC021274|FCRL1|115350|Fc receptor-like 1##AK315748|FCRL1|115350|Fc receptor-like 1##AK096690|FCRL1|115350|Fc receptor-like 1##BC033690|FCRL1|115350|Fc receptor-like 1##AF459634|FCRL1|115350|Fc receptor-like 1##AY043464|FCRL1|115350|Fc receptor-like 1##NM_001159397|FCRL1|115350|Fc receptor-like 1##NM_001159398|FCRL1|115350|Fc receptor-like 1##NM_052938|FCRL1|115350|Fc receptor-like 1##DQ893615|CD5L|922|CD5 molecule-like##DQ895298|CD5L|922|CD5 molecule-like##BC033586|CD5L|922|CD5 molecule-like##U82812|CD5L|922|CD5 molecule-like##AF011429|CD5L|922|CD5 molecule-like##AK292040|CD5L|922|CD5 molecule-like##AY358494|CD5L|922|CD5 molecule-like##NM_005894|CD5L|922|CD5 molecule-like##AY302131|KIRREL|55243|kin of IRRE like (Drosophila)##NM_018240|KIRREL|55243|kin of IRRE like (Drosophila)	0.992082	0.0	denovo_WM_7:39:0.354	denovo_WM_7:40:0.612
chr5	138404263	138404417	reg1004223.p1	7.953	+	HQ589335 TSC_hg19_v1_chr5_+_138211097	-193249	+	TSC_hg19_v1_chr5_-_138211057 NM_015564	-193281	-	AK309790 TSC_hg19_v1_chr5_-_138211025 AB007876 BC028172 AK291064 AK297332	-193327	-	AF547994 TSC_hg19_v1_chr5_-_138533996 AK075177	129649	-	TSC_hg19_v1_chr5_-_138533998 AY358950 BC011568	129668	-	TSC_hg19_v1_chr5_-_138534058 AJ299442 AK074624 NM_001037633 NM_022464	129706	-	HQ589335|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##NM_015564|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK309790|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AB007876|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##BC028172|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK291064|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK297332|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AF547994|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK075177|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AY358950|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##BC011568|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AJ299442|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK074624|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_001037633|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_022464|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)	0.990663	0.0	
chr20	5027763	5027886	reg1004095.p1	7.952	+	BC013112 AF164142 NM_203327	-36899	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-45664	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-223630	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	65791	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	72731	-	AK300558 AK311014 NM_002592	79402	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.972628	0.0	denovo_WM_7:39:0.613
chr9	45437665	45437845	reg1004238.p2	7.952	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1752912	+	NM_001145196	-1807026	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-2304268	-	TSC_hg19_v1_chr9_+_45441926 BC006438	4171	+	BC040528 NM_001113541 NM_015667	20071854	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21019546	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	1.977319	0.0	denovo_WM_7:45:0.325	denovo_WM_7:46:0.261	denovo_WM_7:63:0.256	denovo_WM_7:64:0.320
chrX	7064773	7064944	reg1004065.p1	7.952	+	AF167078 AF167079 NM_016379	-611700	-	AK055471 BC034018 NM_181332	-918178	-	AB033086 AF376803 AX773938 NM_020742	-918971	-	TSC_hg19_v1_chrX_+_7065865 AM072428 DQ851172 FM209047	1093	+	M86934 AK300740 BC012494 TSC_hg19_v1_chrX_-_7066203 AK307088 AK223405 AK300985 AK313155 NM_001135565 NM_001178135 NM_001178136 NM_012080	1334	-	NM_000351 M16505 J04964 AK314034	72643	+	AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AM072428|STS|412|steroid sulfatase (microsomal), isozyme S##FM209047|STS|412|steroid sulfatase (microsomal), isozyme S##M86934|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300740|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##BC012494|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK307088|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK223405|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300985|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK313155|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001135565|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178135|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178136|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_012080|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_000351|STS|412|steroid sulfatase (microsomal), isozyme S##M16505|STS|412|steroid sulfatase (microsomal), isozyme S##J04964|STS|412|steroid sulfatase (microsomal), isozyme S##AK314034|STS|412|steroid sulfatase (microsomal), isozyme S	0.998437	0.0	
chr4	39715383	39715558	reg1004120.p2	7.951	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-15666	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-74914	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-185844	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	263868	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	264123	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	343062	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.0	0.0	
chr6	163837914	163838061	reg1003412.p3	7.951	+	BC019917 TSC_hg19_v1_chr6_+_163836201 AB590716 DQ323998 EU832828 GQ129383 AY780788 AK027309	-1755	+	TSC_hg19_v1_chr6_+_163835795 AF272349	-2197	+	TSC_hg19_v1_chr6_+_163835675 AB067798 AB067799 AB067800 AB067801 NM_006775 NM_206853 NM_206854 NM_206855	-2315	+	AL050218 TSC_hg19_v1_chr6_+_163984651	146626	+	CU693196 TSC_hg19_v1_chr6_-_165723095 BC026278 NM_144980	1885105	-	AB026816 AF127480 NM_006661 AB020593 NM_001130690 TSC_hg19_v1_chr6_-_166075763	2237709	-	BC019917|QKI|9444|QKI, KH domain containing, RNA binding##DQ323998|QKI|9444|QKI, KH domain containing, RNA binding##EU832828|QKI|9444|QKI, KH domain containing, RNA binding##GQ129383|QKI|9444|QKI, KH domain containing, RNA binding##AY780788|QKI|9444|QKI, KH domain containing, RNA binding##AK027309|QKI|9444|QKI, KH domain containing, RNA binding##AF272349|QKI|9444|QKI, KH domain containing, RNA binding##AB067798|QKI|9444|QKI, KH domain containing, RNA binding##AB067799|QKI|9444|QKI, KH domain containing, RNA binding##AB067800|QKI|9444|QKI, KH domain containing, RNA binding##AB067801|QKI|9444|QKI, KH domain containing, RNA binding##NM_006775|QKI|9444|QKI, KH domain containing, RNA binding##NM_206853|QKI|9444|QKI, KH domain containing, RNA binding##NM_206854|QKI|9444|QKI, KH domain containing, RNA binding##NM_206855|QKI|9444|QKI, KH domain containing, RNA binding##AL050218|QKI|9444|QKI, KH domain containing, RNA binding##BC026278|C6orf118|168090|chromosome 6 open reading frame 118##NM_144980|C6orf118|168090|chromosome 6 open reading frame 118##AB026816|PDE10A|10846|phosphodiesterase 10A##AF127480|PDE10A|10846|phosphodiesterase 10A##NM_006661|PDE10A|10846|phosphodiesterase 10A##AB020593|PDE10A|10846|phosphodiesterase 10A##NM_001130690|PDE10A|10846|phosphodiesterase 10A	0.9984	0.0	denovo_WM_7:-31:0.494	denovo_WM_7:-32:0.494
chr9	135546416	135546570	reg1004024.p1	7.951	+	AF142328 NM_012204 TSC_hg19_v1_chr9_+_135545875 BC094774 BC011619 BC022787 BC104755 BC112245 AB529214	-637	+	AF335567 AF335568 AF335569 AF427339 AK027484 NM_022779 NM_138620	-706	-	TSC_hg19_v1_chr9_+_135545447 BC060821	-1075	+	TSC_hg19_v1_chr9_+_135753719 BC012940	207275	+	BC037402 BC050576 NM_152572	207687	-	AK075259 AJ011375 NM_018956	207793	+	AF142328|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##NM_012204|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC094774|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC011619|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC022787|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC104755|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC112245|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##AF335567|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF335568|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF335569|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF427339|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AK027484|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##NM_022779|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##NM_138620|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##BC060821|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC012940|C9orf9|11092|chromosome 9 open reading frame 9##BC037402|AK8|158067|adenylate kinase 8##BC050576|AK8|158067|adenylate kinase 8##NM_152572|AK8|158067|adenylate kinase 8##AK075259|C9orf9|11092|chromosome 9 open reading frame 9##AJ011375|C9orf9|11092|chromosome 9 open reading frame 9##NM_018956|C9orf9|11092|chromosome 9 open reading frame 9	0.994055	0.0	denovo_WM_7:13:0.245	denovo_WM_7:14:0.286	denovo_WM_7:17:0.429
chr4	18023767	18023929	reg1004467.p1	7.950	+	AK096181 TSC_hg19_v1_chr4_-_18023379 CU691482 BC037322 AK299939 NM_001166139 NM_153686	-382	-	AF331796 NM_022346 TSC_hg19_v1_chr4_+_17812610 AB013299 AK022512 BC068467 AF235023 BC143383 BC101476 CU686641	-211237	+	TSC_hg19_v1_chr4_-_17812353 AK056116 NM_017741	-211575	-	AB017168 NM_004787 BC117190 BC143978 AF133270	2231488	+	TSC_hg19_v1_chr4_+_20702080 AK307786 NM_001130727 NM_145048 AK294077 AK297556 AK307355 AK315482 AK291544 AK307092	2678219	+	DQ148492 AK294188 TSC_hg19_v1_chr4_-_20985711	2961781	-	AK096181|LCORL|254251|ligand dependent nuclear receptor corepressor-like##BC037322|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AK299939|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_001166139|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_153686|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AF331796|NCAPG|64151|non-SMC condensin I complex, subunit G##NM_022346|NCAPG|64151|non-SMC condensin I complex, subunit G##AB013299|NCAPG|64151|non-SMC condensin I complex, subunit G##AK022512|NCAPG|64151|non-SMC condensin I complex, subunit G##BC068467|NCAPG|64151|non-SMC condensin I complex, subunit G##AF235023|NCAPG|64151|non-SMC condensin I complex, subunit G##BC143383|NCAPG|64151|non-SMC condensin I complex, subunit G##BC101476|NCAPG|64151|non-SMC condensin I complex, subunit G##AK056116|DCAF16|54876|DDB1 and CUL4 associated factor 16##NM_017741|DCAF16|54876|DDB1 and CUL4 associated factor 16##AB017168|SLIT2|9353|slit homolog 2 (Drosophila)##NM_004787|SLIT2|9353|slit homolog 2 (Drosophila)##BC117190|SLIT2|9353|slit homolog 2 (Drosophila)##BC143978|SLIT2|9353|slit homolog 2 (Drosophila)##AF133270|SLIT2|9353|slit homolog 2 (Drosophila)##AK307786|PACRGL|133015|PARK2 co-regulated-like##NM_001130727|PACRGL|133015|PARK2 co-regulated-like##NM_145048|PACRGL|133015|PARK2 co-regulated-like##AK294077|PACRGL|133015|PARK2 co-regulated-like##AK297556|PACRGL|133015|PARK2 co-regulated-like##AK307355|PACRGL|133015|PARK2 co-regulated-like##AK315482|PACRGL|133015|PARK2 co-regulated-like##AK291544|PACRGL|133015|PARK2 co-regulated-like##AK307092|PACRGL|133015|PARK2 co-regulated-like##DQ148492|KCNIP4|80333|Kv channel interacting protein 4##AK294188|KCNIP4|80333|Kv channel interacting protein 4	0.580769	0.0	denovo_WM_7:47:0.350
chr7	36431499	36431627	reg1004301.p1	7.950	+	BC028678 NM_001100425	-1849	-	TSC_hg19_v1_chr7_+_36429470 BC070066 NM_018685 AK299803 AK291254 AF273437	-2123	+	TSC_hg19_v1_chr7_-_36406811 BC056191 AB384038 BC136362 BC144032 AB020702 BC110422 NM_001199707 AK293912 AK294686 AK302559 NM_001199706 NM_015314 NM_001199708	-24891	-	TSC_hg19_v1_chr7_-_36764092 M62840 AK297016 AK308215 BC025698 AK223476 NM_001177506 NM_001177507 NM_001637	332513	-	BC064635 NM_001039459	593127	-	D87457 BC003051 BC077074 TSC_hg19_v1_chr7_-_37025739 AK301151	594157	-	BC028678|KIAA0895|23366|KIAA0895##NM_001100425|KIAA0895|23366|KIAA0895##BC070066|ANLN|54443|anillin, actin binding protein##NM_018685|ANLN|54443|anillin, actin binding protein##AK299803|ANLN|54443|anillin, actin binding protein##AK291254|ANLN|54443|anillin, actin binding protein##AF273437|ANLN|54443|anillin, actin binding protein##BC056191|KIAA0895|23366|KIAA0895##BC136362|KIAA0895|23366|KIAA0895##BC144032|KIAA0895|23366|KIAA0895##AB020702|KIAA0895|23366|KIAA0895##BC110422|KIAA0895|23366|KIAA0895##NM_001199707|KIAA0895|23366|KIAA0895##AK293912|KIAA0895|23366|KIAA0895##AK294686|KIAA0895|23366|KIAA0895##AK302559|KIAA0895|23366|KIAA0895##NM_001199706|KIAA0895|23366|KIAA0895##NM_015314|KIAA0895|23366|KIAA0895##NM_001199708|KIAA0895|23366|KIAA0895##M62840|AOAH|313|acyloxyacyl hydrolase (neutrophil)##AK297016|AOAH|313|acyloxyacyl hydrolase (neutrophil)##AK308215|AOAH|313|acyloxyacyl hydrolase (neutrophil)##BC025698|AOAH|313|acyloxyacyl hydrolase (neutrophil)##AK223476|AOAH|313|acyloxyacyl hydrolase (neutrophil)##NM_001177506|AOAH|313|acyloxyacyl hydrolase (neutrophil)##NM_001177507|AOAH|313|acyloxyacyl hydrolase (neutrophil)##NM_001637|AOAH|313|acyloxyacyl hydrolase (neutrophil)##BC064635|ELMO1|9844|engulfment and cell motility 1##NM_001039459|ELMO1|9844|engulfment and cell motility 1##D87457|ELMO1|9844|engulfment and cell motility 1##BC003051|ELMO1|9844|engulfment and cell motility 1##BC077074|ELMO1|9844|engulfment and cell motility 1##AK301151|ELMO1|9844|engulfment and cell motility 1	0.840566	0.0	denovo_WM_7:-3:0.690
chr17	29639492	29639604	reg1003619.p1	7.949	+	X51694 BC018050 AK222663 AK312445 NM_002544	-15234	-	TSC_hg19_v1_chr17_+_29421994 AK289936 M82814 M89914 BC144643 D42072	-217439	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	-217604	+	AK312822 TSC_hg19_v1_chr17_-_29641073	1523	-	TSC_hg19_v1_chr17_-_29641092 BC005926	1541	-	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	1563	-	X51694|OMG|4974|oligodendrocyte myelin glycoprotein##BC018050|OMG|4974|oligodendrocyte myelin glycoprotein##AK222663|OMG|4974|oligodendrocyte myelin glycoprotein##AK312445|OMG|4974|oligodendrocyte myelin glycoprotein##NM_002544|OMG|4974|oligodendrocyte myelin glycoprotein##AK289936|NF1|4763|neurofibromin 1##M82814|NF1|4763|neurofibromin 1##M89914|NF1|4763|neurofibromin 1##BC144643|NF1|4763|neurofibromin 1##D42072|NF1|4763|neurofibromin 1##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B	0.998858	0.0	denovo_WM_7:-1:0.314	denovo_WM_7:-2:0.314	denovo_WM_7:-3:0.314
chr17	7535900	7536008	reg1004069.p2	7.948	+	EU352660 NM_001040 NM_001146279 NM_001146280 NM_001146281 TSC_hg19_v1_chr17_+_7533452 BC101785 BC112186 BC069597 X05403 EU352661 EU352662 EU352663 EU352664	-2443	+	TSC_hg19_v1_chr17_+_7533444 EU352659	-2529	+	TSC_hg19_v1_chr17_+_7531286 AK302603 EU352657 EU352658 X16351 EU352665 EU352666 EU352667 EU352668 EU352669	-4608	+	TSC_hg19_v1_chr17_+_7554243 NM_001678	18292	+	TSC_hg19_v1_chr17_+_7554417 M81181 AK290143 BC126175	18503	+	TSC_hg19_v1_chr17_+_7554712 U45945 HQ258155 AY946017	18859	+	EU352660|SHBG|6462|sex hormone-binding globulin##NM_001040|SHBG|6462|sex hormone-binding globulin##NM_001146279|SHBG|6462|sex hormone-binding globulin##NM_001146280|SHBG|6462|sex hormone-binding globulin##NM_001146281|SHBG|6462|sex hormone-binding globulin##BC101785|SHBG|6462|sex hormone-binding globulin##BC112186|SHBG|6462|sex hormone-binding globulin##BC069597|SHBG|6462|sex hormone-binding globulin##X05403|SHBG|6462|sex hormone-binding globulin##EU352661|SHBG|6462|sex hormone-binding globulin##EU352662|SHBG|6462|sex hormone-binding globulin##EU352663|SHBG|6462|sex hormone-binding globulin##EU352664|SHBG|6462|sex hormone-binding globulin##EU352659|SHBG|6462|sex hormone-binding globulin##AK302603|SHBG|6462|sex hormone-binding globulin##EU352657|SHBG|6462|sex hormone-binding globulin##EU352658|SHBG|6462|sex hormone-binding globulin##X16351|SHBG|6462|sex hormone-binding globulin##EU352665|SHBG|6462|sex hormone-binding globulin##EU352666|SHBG|6462|sex hormone-binding globulin##EU352667|SHBG|6462|sex hormone-binding globulin##EU352668|SHBG|6462|sex hormone-binding globulin##EU352669|SHBG|6462|sex hormone-binding globulin##NM_001678|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide##M81181|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide##AK290143|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide##BC126175|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide##U45945|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide##HQ258155|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide##AY946017|ATP1B2|482|ATPase, Na+/K+ transporting, beta 2 polypeptide	0.0	0.986053	CTCF.p2:2:0.986
chr15	41583617	41583735	reg1000770.p2	7.947	+	TSC_hg19_v1_chr15_+_41576202 BC037835 BX647764 AK172729 AY007106	-7486	+	TSC_hg19_v1_chr15_+_41523465 AK307060 AK312582 BC051815 BC031293 CR536539 CR542085	-60154	+	TSC_hg19_v1_chr15_+_41523431 AK299660 NM_007236	-60258	+	TSC_hg19_v1_chr15_-_41624771 AF025441 BC015050 NM_007280	41113	-	NM_001243142 NM_001243143 NM_001243144 NM_016359 NM_018454	41215	+	AK307728 AK222819 AK290879 AK293168 BC011008 AF217513 TSC_hg19_v1_chr15_+_41625080 AK225703 AL833611 AK023483 BC024772 AF090915 AF290612 BC001308 BC012887	41405	+	BC037835|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##BX647764|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK172729|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AY007106|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK307060|CHP|11261|calcium binding protein P22##AK312582|CHP|11261|calcium binding protein P22##BC031293|CHP|11261|calcium binding protein P22##CR536539|CHP|11261|calcium binding protein P22##CR542085|CHP|11261|calcium binding protein P22##AK299660|CHP|11261|calcium binding protein P22##NM_007236|CHP|11261|calcium binding protein P22##AF025441|OIP5|11339|Opa interacting protein 5##BC015050|OIP5|11339|Opa interacting protein 5##NM_007280|OIP5|11339|Opa interacting protein 5##NM_001243142|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243143|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243144|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_016359|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_018454|NUSAP1|51203|nucleolar and spindle associated protein 1##AK307728|NUSAP1|51203|nucleolar and spindle associated protein 1##AK222819|NUSAP1|51203|nucleolar and spindle associated protein 1##AK290879|NUSAP1|51203|nucleolar and spindle associated protein 1##AK293168|NUSAP1|51203|nucleolar and spindle associated protein 1##BC011008|NUSAP1|51203|nucleolar and spindle associated protein 1##AF217513|NUSAP1|51203|nucleolar and spindle associated protein 1##AK225703|NUSAP1|51203|nucleolar and spindle associated protein 1##AL833611|NUSAP1|51203|nucleolar and spindle associated protein 1##AK023483|NUSAP1|51203|nucleolar and spindle associated protein 1##BC024772|NUSAP1|51203|nucleolar and spindle associated protein 1##AF090915|NUSAP1|51203|nucleolar and spindle associated protein 1##AF290612|NUSAP1|51203|nucleolar and spindle associated protein 1##BC001308|NUSAP1|51203|nucleolar and spindle associated protein 1##BC012887|NUSAP1|51203|nucleolar and spindle associated protein 1	0.996324	0.014454	denovo_WM_7:10:0.448	denovo_WM_7:11:0.448
chr4	17638575	17638684	reg1005209.p1	7.947	+	TSC_hg19_v1_chr4_+_17616263 AF318059 AK313928 AF358829 NM_025205 BC011936 AF317680 DQ893391 DQ896713 AF317679 AF317678	-22363	+	TSC_hg19_v1_chr4_+_17579121 AK298613 AK307723 AK225511 BC006199 AK298790	-59499	+	TSC_hg19_v1_chr4_+_17579057 BC065564 CR457128 AK022055	-59553	+	AK308144 NM_015688	144505	-	BC050697 TSC_hg19_v1_chr4_-_17806917	168239	-	TSC_hg19_v1_chr4_-_17812353 AK056116 NM_017741	173644	-	AF318059|MED28|80306|mediator complex subunit 28##AK313928|MED28|80306|mediator complex subunit 28##AF358829|MED28|80306|mediator complex subunit 28##NM_025205|MED28|80306|mediator complex subunit 28##BC011936|MED28|80306|mediator complex subunit 28##AF317680|MED28|80306|mediator complex subunit 28##DQ893391|MED28|80306|mediator complex subunit 28##DQ896713|MED28|80306|mediator complex subunit 28##AF317679|MED28|80306|mediator complex subunit 28##AF317678|MED28|80306|mediator complex subunit 28##AK298613|LAP3|51056|leucine aminopeptidase 3##AK307723|LAP3|51056|leucine aminopeptidase 3##AK225511|LAP3|51056|leucine aminopeptidase 3##BC006199|LAP3|51056|leucine aminopeptidase 3##AK298790|LAP3|51056|leucine aminopeptidase 3##BC065564|LAP3|51056|leucine aminopeptidase 3##CR457128|LAP3|51056|leucine aminopeptidase 3##AK022055|LAP3|51056|leucine aminopeptidase 3##AK308144|FAM184B|27146|family with sequence similarity 184, member B##NM_015688|FAM184B|27146|family with sequence similarity 184, member B##BC050697|DCAF16|54876|DDB1 and CUL4 associated factor 16##AK056116|DCAF16|54876|DDB1 and CUL4 associated factor 16##NM_017741|DCAF16|54876|DDB1 and CUL4 associated factor 16	0.988575	0.998396	CTCF.p2:-21:0.998	denovo_WM_7:29:0.784
chr10	91094044	91094223	reg1004013.p1	7.946	+	NM_001031683 AK297137 AF026939 BC001383 BC004977	-1850	+	NM_001549 AK290427 AF083470 AK312675 U52513 TSC_hg19_v1_chr10_+_91087771	-6447	+	NM_001547 AK312831 BC005987 BC032839 TSC_hg19_v1_chr10_+_91061802 AK300431	-32378	+	BC040833 AK091558 TSC_hg19_v1_chr10_-_91102477	8322	-	BX647300 NM_001010987 BC150189 BC137368 BC137369	43694	+	NM_001548 BC007091 AK314588 AK308688 X03557	58230	+	NM_001031683|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK297137|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF026939|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC001383|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC004977|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001549|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK290427|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF083470|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK312675|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##U52513|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001547|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK312831|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC005987|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC032839|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK300431|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK091558|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##BX647300|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##NM_001010987|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC150189|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC137368|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##BC137369|IFIT1B|439996|interferon-induced protein with tetratricopeptide repeats 1B##NM_001548|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##BC007091|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##AK314588|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##AK308688|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1##X03557|IFIT1|3434|interferon-induced protein with tetratricopeptide repeats 1	0.779082	0.0	denovo_WM_7:91:0.575
chr12	39835435	39835605	reg1003025.p1	7.944	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-536137	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-1124895	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5660047	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1479	-	AK314254 NM_005164	178322	-	BC038754 NM_001031748 BC048120 AK097445	184475	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	0.995565	0.0	
chr10	112116537	112116676	reg1003934.p1	7.943	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-51906	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-52013	-	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-130785	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	141145	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	210886	+	AF067163 TSC_hg19_v1_chr10_+_112344155	227509	+	BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3	0.691217	0.0	denovo_WM_7:32:0.253	denovo_WM_7:33:0.257
chr8	2557055	2557235	reg1003167.p2	7.943	+	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-563943	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-604237	+	TSC_hg19_v1_chr8_+_1950340 BC169332	-606793	+	AK128880 TSC_hg19_v1_chr8_-_2585966	28837	-	AY017307 TSC_hg19_v1_chr8_-_4852228	2295080	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	2295149	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##BC169332|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	0.323525	0.0	denovo_WM_7:2:0.205
chr12	54997136	54997263	reg1003033.p1	7.941	+	CR457003 AY063766 U48707 TSC_hg19_v1_chr12_-_54982398 BC022470 NM_006741 AK123969	-14835	-	TSC_hg19_v1_chr12_+_54955248 BX538092 NM_001165975 AK302931 AK126899 AJ401609	-41902	+	TSC_hg19_v1_chr12_+_54943386 BC032226 AB209200 AK302899 U86078	-53789	+	CU686745 CU687522 AF238867 BC069317 NM_033277 BC062217	31452	-	AY590150 AF144011 BC062682 BC069108 NM_053283 EF503687 EF503688 EF503689	45006	-	NM_058173 AF414087 AY359062 BC111421 AY651259	251133	+	CR457003|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##AY063766|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##U48707|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##BC022470|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##NM_006741|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##AK123969|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##BX538092|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##NM_001165975|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AK302931|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AK126899|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AJ401609|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##BC032226|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AB209200|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AK302899|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##U86078|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AF238867|LACRT|90070|lacritin##BC069317|LACRT|90070|lacritin##NM_033277|LACRT|90070|lacritin##BC062217|LACRT|90070|lacritin##AY590150|DCD|117159|dermcidin##AF144011|DCD|117159|dermcidin##BC062682|DCD|117159|dermcidin##BC069108|DCD|117159|dermcidin##NM_053283|DCD|117159|dermcidin##EF503687|DCD|117159|dermcidin##EF503688|DCD|117159|dermcidin##EF503689|DCD|117159|dermcidin##NM_058173|MUCL1|118430|mucin-like 1##AF414087|MUCL1|118430|mucin-like 1##AY359062|MUCL1|118430|mucin-like 1##BC111421|MUCL1|118430|mucin-like 1##AY651259|MUCL1|118430|mucin-like 1	0.996904	0.01333	
chr6	111105538	111105709	reg1002198.p2	7.941	+	TSC_hg19_v1_chr6_-_110797837 BC047565 NM_033125	-307760	-	TSC_hg19_v1_chr6_-_110797817 AK304546	-307805	-	BC012014 AF268892 AY145502 BC037247 TSC_hg19_v1_chr6_-_110797794	-307835	-	AK304351 TSC_hg19_v1_chr6_+_111135843	30210	+	BC047513 TSC_hg19_v1_chr6_-_111136246	30595	-	AJ420571 TSC_hg19_v1_chr6_-_111136300	30676	-	BC047565|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##NM_033125|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304546|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC012014|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AF268892|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AY145502|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC037247|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304351|AMD1|262|adenosylmethionine decarboxylase 1##BC047513|CDK19|23097|cyclin-dependent kinase 19##AJ420571|CDK19|23097|cyclin-dependent kinase 19	0.0	0.0	
chr17	66178464	66178598	reg1002211.p4	7.940	+	TSC_hg19_v1_chr17_+_66097706 BC045718	-80833	+	TSC_hg19_v1_chr17_+_66031889 BC034443	-146643	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	-146691	+	NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_016627 TSC_hg19_v1_chr17_+_66244216 BC056271 BC050709	65649	+	TSC_hg19_v1_chr17_+_66244233 AF208856	65712	+	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	76803	+	BC045718|LOC100499466|100499466|uncharacterized LOC100499466##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_001033569|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033570|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033571|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033572|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033574|AMZ2|51321|archaelysin family metallopeptidase 2##NM_016627|AMZ2|51321|archaelysin family metallopeptidase 2##BC056271|AMZ2|51321|archaelysin family metallopeptidase 2##BC050709|AMZ2|51321|archaelysin family metallopeptidase 2##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G	1.987093	0.0	denovo_WM_7:53:0.557	denovo_WM_7:54:0.279	denovo_WM_7:68:0.332	denovo_WM_7:69:0.610
chr7	102105817	102105971	reg1003329.p1	7.940	+	TSC_hg19_v1_chr7_+_102105459 AB209379 CU688900	-402	+	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	-486	+	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	-577	-	DQ893151 DQ896446 TSC_hg19_v1_chr7_-_102119367 X98433 BC040116 BC024165 BC141830 BC139902 BC065711 L37127 X82385 AK290515 NM_006234	13449	-	AK302217 NM_001031618 NM_001166339	85784	+	AJ277739 AJ277740 AJ277741 AB384935 BC056864 BC071870 TSC_hg19_v1_chr7_-_102212997 BC044209 BC050598	107093	-	AB209379|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##DQ893151|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##DQ896446|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##X98433|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC040116|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC024165|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC141830|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC139902|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC065711|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##L37127|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##X82385|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##AK290515|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##NM_006234|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##AJ277739|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AJ277740|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##AJ277741|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2	1.990479	0.0	denovo_WM_7:50:0.237	denovo_WM_7:51:0.203	denovo_WM_7:70:0.209	denovo_WM_7:71:0.243
chr12	57079521	57079610	reg1003867.p6	7.939	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-39739	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-39810	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-49439	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	2285	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	2375	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	2436	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	1.009089	0.0	
chr17	1510900	1511031	reg1004076.p2	7.939	+	BC082976 TSC_hg19_v1_chr17_-_1466077 BC027177 D30036 M73704 BC045108 BC068538 NM_006224	-44883	-	TSC_hg19_v1_chr17_-_1420177 AK312844 NM_001135642 NM_016532 NM_130766	-90786	-	TSC_hg19_v1_chr17_-_1419907 DQ892815 DQ896061 AB529166 AK297955 AK303907 AK307293 AB036829 AB036830 AK312585 BC004362	-90999	-	AF289592 TSC_hg19_v1_chr17_-_1531711 AB120364	20675	-	TSC_hg19_v1_chr17_-_1532115 BC027923 NM_152346 BC071859	21179	-	D63483 AK310174 AB052950 AB052949 AB052947 D86864 TSC_hg19_v1_chr17_-_1549050 AK291810 AB052948 BC039735 NM_003693 NM_145350 NM_145352 AK298737	38072	-	BC082976|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC027177|PITPNA|5306|phosphatidylinositol transfer protein, alpha##D30036|PITPNA|5306|phosphatidylinositol transfer protein, alpha##M73704|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC045108|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC068538|PITPNA|5306|phosphatidylinositol transfer protein, alpha##NM_006224|PITPNA|5306|phosphatidylinositol transfer protein, alpha##AK312844|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_001135642|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_016532|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_130766|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ892815|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ896061|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK297955|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK303907|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK307293|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036829|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036830|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK312585|INPP5K|51763|inositol polyphosphate-5-phosphatase K##BC004362|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AF289592|SLC43A2|124935|solute carrier family 43, member 2##AB120364|SLC43A2|124935|solute carrier family 43, member 2##BC027923|SLC43A2|124935|solute carrier family 43, member 2##NM_152346|SLC43A2|124935|solute carrier family 43, member 2##BC071859|SLC43A2|124935|solute carrier family 43, member 2##D63483|SCARF1|8578|scavenger receptor class F, member 1##AK310174|SCARF1|8578|scavenger receptor class F, member 1##AB052950|SCARF1|8578|scavenger receptor class F, member 1##AB052949|SCARF1|8578|scavenger receptor class F, member 1##AB052947|SCARF1|8578|scavenger receptor class F, member 1##D86864|SCARF1|8578|scavenger receptor class F, member 1##AK291810|SCARF1|8578|scavenger receptor class F, member 1##AB052948|SCARF1|8578|scavenger receptor class F, member 1##BC039735|SCARF1|8578|scavenger receptor class F, member 1##NM_003693|SCARF1|8578|scavenger receptor class F, member 1##NM_145350|SCARF1|8578|scavenger receptor class F, member 1##NM_145352|SCARF1|8578|scavenger receptor class F, member 1##AK298737|SCARF1|8578|scavenger receptor class F, member 1	0.815802	0.0	denovo_WM_7:56:0.791
chr2	47394820	47395000	reg1004389.p1	7.939	+	AK097491 NM_001163561 NM_173649	-12440	-	TSC_hg19_v1_chr2_-_47168913 NM_001171508 NM_001171511	-225963	-	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	-226037	-	TSC_hg19_v1_chr2_-_47403624 M19311 BC003354 BC006464	8716	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	8740	-	TSC_hg19_v1_chr2_-_47403656 BC008437	8744	-	AK097491|C2orf61|285051|chromosome 2 open reading frame 61##NM_001163561|C2orf61|285051|chromosome 2 open reading frame 61##NM_173649|C2orf61|285051|chromosome 2 open reading frame 61##NM_001171508|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171511|MCFD2|90411|multiple coagulation factor deficiency 2##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2##M19311|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC003354|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC006464|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)	3.970034	0.0	denovo_WM_7:17:0.211	denovo_WM_7:18:0.211	denovo_WM_7:19:0.211	denovo_WM_7:20:0.211	denovo_WM_7:35:0.388	denovo_WM_7:38:0.417	denovo_WM_7:-49:0.283	denovo_WM_7:-50:0.236	denovo_WM_7:-68:0.237	denovo_WM_7:-69:0.284
chr3	51533890	51534050	reg1000047.p1	7.939	+	BC022792 TSC_hg19_v1_chr3_-_51533986	-21	-	TSC_hg19_v1_chr3_+_51428730 BC121184 BC139836	-105220	+	NM_013286 TSC_hg19_v1_chr3_+_51428706	-105268	+	TSC_hg19_v1_chr3_-_51534015 AB018343 BC110371 NM_001171904 NM_014703	36	-	AK122683 NM_015106	41625	+	NM_001129884 NM_001243727 NM_015926 TSC_hg19_v1_chr3_+_51705247 AK023997 AK222938 AK222949 BC008742 NM_001243725 NM_001243726 AY358972 BC001592	171296	+	BC022792|VPRBP|9730|Vpr (HIV-1) binding protein##BC121184|RBM15B|29890|RNA binding motif protein 15B##BC139836|RBM15B|29890|RNA binding motif protein 15B##NM_013286|RBM15B|29890|RNA binding motif protein 15B##AB018343|VPRBP|9730|Vpr (HIV-1) binding protein##BC110371|VPRBP|9730|Vpr (HIV-1) binding protein##NM_001171904|VPRBP|9730|Vpr (HIV-1) binding protein##NM_014703|VPRBP|9730|Vpr (HIV-1) binding protein##AK122683|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_015106|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_001129884|TEX264|51368|testis expressed 264##NM_001243727|TEX264|51368|testis expressed 264##NM_015926|TEX264|51368|testis expressed 264##AK023997|TEX264|51368|testis expressed 264##AK222938|TEX264|51368|testis expressed 264##AK222949|TEX264|51368|testis expressed 264##BC008742|TEX264|51368|testis expressed 264##NM_001243725|TEX264|51368|testis expressed 264##NM_001243726|TEX264|51368|testis expressed 264##AY358972|TEX264|51368|testis expressed 264##BC001592|TEX264|51368|testis expressed 264	0.0	0.0	
chr6	134606636	134606783	reg1004053.p1	7.938	+	TSC_hg19_v1_chr6_-_134498984 FM205708 AK293383 NM_001143677	-107717	-	NM_001143678 AK298688	-109611	-	FM205707 TSC_hg19_v1_chr6_-_134496850	-109848	-	AK055077 NM_001143676	32486	-	TSC_hg19_v1_chr6_+_134758857 AK055166	152139	+	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	664523	-	FM205708|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK293383|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143677|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143678|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK298688|SGK1|6446|serum/glucocorticoid regulated kinase 1##FM205707|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK055077|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143676|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK055166|LOC154092|154092|uncharacterized LOC154092##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1	1.997782	0.0	denovo_WM_7:-31:0.842
chr6	138151924	138152067	reg1003745.p1	7.937	+	BC051352 AK096362 NM_175747	-336470	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-611437	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-611450	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	36542	+	TSC_hg19_v1_chr6_-_138189314 AK124173	37355	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	276573	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	1.973769	0.0	denovo_WM_7:0:0.761	denovo_WM_7:-65:0.657
chr3	26974463	26974607	reg1004504.p1	7.935	+	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-310235	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1142955	+	AK296047 NM_001145294	-1143023	-	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	436378	-	AF047033 AF089726 NM_003615	523709	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	551290	-	BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK296047|NGLY1|55768|N-glycanase 1##NM_001145294|NGLY1|55768|N-glycanase 1##AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.998858	0.0	denovo_WM_7:22:0.314	denovo_WM_7:23:0.314	denovo_WM_7:24:0.314
chr10	70786958	70787101	reg1003792.p1	7.932	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-38494	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-71097	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-125912	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	60807	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	60855	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	96862	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	1.901753	0.0	denovo_WM_7:30:0.911	denovo_WM_7:45:0.925
chr1	116249575	116249681	reg1004139.p2	7.932	+	AB057596 NM_001172412	-64379	+	NM_001172411 NM_138959 BC065272 AF481859	-65036	+	BC032517 NM_002506 X52599	-368775	-	CU692536 DQ893219 DQ896548 D55655 AK225959 TSC_hg19_v1_chr1_-_116311307	61606	-	TSC_hg19_v1_chr1_-_116311336 AK295502 BC022288 AK313041	61723	-	AK129891 TSC_hg19_v1_chr1_-_116311410 NM_001232 AK293595	61788	-	AB057596|VANGL1|81839|vang-like 1 (van gogh, Drosophila)##NM_001172412|VANGL1|81839|vang-like 1 (van gogh, Drosophila)##NM_001172411|VANGL1|81839|vang-like 1 (van gogh, Drosophila)##NM_138959|VANGL1|81839|vang-like 1 (van gogh, Drosophila)##BC065272|VANGL1|81839|vang-like 1 (van gogh, Drosophila)##AF481859|VANGL1|81839|vang-like 1 (van gogh, Drosophila)##BC032517|NGF|4803|nerve growth factor (beta polypeptide)##NM_002506|NGF|4803|nerve growth factor (beta polypeptide)##X52599|NGF|4803|nerve growth factor (beta polypeptide)##DQ893219|CASQ2|845|calsequestrin 2 (cardiac muscle)##DQ896548|CASQ2|845|calsequestrin 2 (cardiac muscle)##D55655|CASQ2|845|calsequestrin 2 (cardiac muscle)##AK225959|CASQ2|845|calsequestrin 2 (cardiac muscle)##AK295502|CASQ2|845|calsequestrin 2 (cardiac muscle)##BC022288|CASQ2|845|calsequestrin 2 (cardiac muscle)##AK313041|CASQ2|845|calsequestrin 2 (cardiac muscle)##AK129891|CASQ2|845|calsequestrin 2 (cardiac muscle)##NM_001232|CASQ2|845|calsequestrin 2 (cardiac muscle)##AK293595|CASQ2|845|calsequestrin 2 (cardiac muscle)	0.989992	0.787728	CTCF.p2:12:0.788	denovo_WM_7:35:0.696	denovo_WM_7:37:0.217
chr11	81690621	81690737	reg1004077.p2	7.932	+	NM_001098816 TSC_hg19_v1_chr11_-_79151755	-2538955	-	TSC_hg19_v1_chr11_-_78285888 AK315425 NM_001243251 NM_024678	-3404784	-	BC007800 TSC_hg19_v1_chr11_-_78285839 AK056980	-3404887	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	754219	-	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	920838	-	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	922095	+	NM_001098816|ODZ4|26011|odz, odd Oz/ten-m homolog 4 (Drosophila)##AK315425|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_001243251|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_024678|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##BC007800|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AK056980|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82	0.993055	0.0	denovo_WM_7:-27:0.314	denovo_WM_7:-28:0.314	denovo_WM_7:-29:0.314
chr1	203830460	203830629	reg1003758.p1	7.932	+	NM_001174108	-63894	+	TSC_hg19_v1_chr1_+_203764830 BC014268 BC038513	-65716	+	TSC_hg19_v1_chr1_+_203764804 AK296983	-65740	+	TSC_hg19_v1_chr1_+_203830730 AK307255 D28435 AK309140	183	+	TSC_hg19_v1_chr1_+_203830735 AK312130 BC090951 NM_003094 M37716 X12466 BC002639 S60260	201	+	TSC_hg19_v1_chr1_+_203830776 BC072433 AB464220 M15919	247	+	NM_001174108|ZBED6|100381270|zinc finger, BED-type containing 6##BC014268|ZC3H11A|9877|zinc finger CCCH-type containing 11A##BC038513|ZC3H11A|9877|zinc finger CCCH-type containing 11A##AK296983|ZC3H11A|9877|zinc finger CCCH-type containing 11A##AK307255|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##AK312130|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##BC090951|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##NM_003094|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##M37716|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##X12466|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##BC002639|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##BC072433|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E##M15919|SNRPE|6635|small nuclear ribonucleoprotein polypeptide E	0.986336	0.897397	CTCF.p2:23:0.897	denovo_WM_7:-59:0.566	denovo_WM_7:-62:0.377
chr11	75535368	75535548	reg1000746.p1	7.931	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-9180	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-9236	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-55535	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	382054	-	TSC_hg19_v1_chr11_-_75921806 AK075540	386346	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	556550	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	1.05066	0.0	denovo_WM_7:-11:0.480	denovo_WM_7:-13:0.455
chr5	85913717	85913869	reg1003970.p1	7.931	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-35	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2233129	-	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	-2233547	-	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	24	+	TSC_hg19_v1_chr5_+_86563706 CR749722	649892	+	TSC_hg19_v1_chr5_+_86563831 BC131816	650033	+	AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.0	0.0	
chr6	149079706	149079879	reg1004247.p2	7.931	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-11583	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-415601	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-415802	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	559311	+	AK315038 NM_015093 AK307650	559649	+	AY340238 NM_001002255 BC130305 HQ258040	641716	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.0	0.011522	
chr5	178971851	178971962	reg1002004.p2	7.929	+	AK308213 NM_014244 NM_021599 TSC_hg19_v1_chr5_-_178772442	-199464	-	AJ003125 AB587330 TSC_hg19_v1_chr5_-_178772362	-199550	-	TSC_hg19_v1_chr5_+_178487382 BC063312 AF525463 NM_014594	-484437	+	TSC_hg19_v1_chr5_+_178977611 AF312367 NM_025158 AF361055	5712	+	TSC_hg19_v1_chr5_+_178977843 AB209507	5936	+	AK291926 NM_001040451 NM_001040452 BC032571 AK075021 TSC_hg19_v1_chr5_+_178986802	14843	+	AK308213|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##NM_014244|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##NM_021599|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##AJ003125|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##BC063312|ZNF354C|30832|zinc finger protein 354C##AF525463|ZNF354C|30832|zinc finger protein 354C##NM_014594|ZNF354C|30832|zinc finger protein 354C##AF312367|RUFY1|80230|RUN and FYVE domain containing 1##NM_025158|RUFY1|80230|RUN and FYVE domain containing 1##AF361055|RUFY1|80230|RUN and FYVE domain containing 1##AB209507|RUFY1|80230|RUN and FYVE domain containing 1##AK291926|RUFY1|80230|RUN and FYVE domain containing 1##NM_001040451|RUFY1|80230|RUN and FYVE domain containing 1##NM_001040452|RUFY1|80230|RUN and FYVE domain containing 1##BC032571|RUFY1|80230|RUN and FYVE domain containing 1##AK075021|RUFY1|80230|RUN and FYVE domain containing 1	1.995831	0.0	denovo_WM_7:30:0.527	denovo_WM_7:31:0.470	denovo_WM_7:81:0.494	denovo_WM_7:82:0.494
chr10	91056187	91056313	reg1004229.p1	7.928	+	TSC_hg19_v1_chr10_-_91011616 BC012287 X76488 NM_000235 NM_001127605	-44628	-	AK130882 TSC_hg19_v1_chr10_-_91011565	-44683	-	U08464 Z31690 TSC_hg19_v1_chr10_-_91011533 AK222760 AK290241 AK297079 AK314665 M74775	-44720	-	NM_001547 AK312831 BC005987 BC032839 TSC_hg19_v1_chr10_+_91061802 AK300431	5505	+	NM_001549 AK290427 AF083470 AK312675 U52513 TSC_hg19_v1_chr10_+_91087771	31436	+	NM_001031683 AK297137 AF026939 BC001383 BC004977	36033	+	BC012287|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##X76488|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_000235|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_001127605|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK130882|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##U08464|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##Z31690|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK222760|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK290241|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK297079|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK314665|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##M74775|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##NM_001547|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK312831|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC005987|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##BC032839|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##AK300431|IFIT2|3433|interferon-induced protein with tetratricopeptide repeats 2##NM_001549|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK290427|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF083470|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK312675|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##U52513|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##NM_001031683|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AK297137|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##AF026939|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC001383|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3##BC004977|IFIT3|3437|interferon-induced protein with tetratricopeptide repeats 3	0.997749	0.0	denovo_WM_7:4:0.310	denovo_WM_7:5:0.310	denovo_WM_7:6:0.310
chr15	78441321	78441475	reg1002694.p2	7.928	+	BT019962 CU690402 AB528675 AB012955 TSC_hg19_v1_chr15_-_78423867 AK293167 BC047381 BC057292 BC033108 NM_006383	-17636	-	NM_001101404	-56472	+	TSC_hg19_v1_chr15_-_78370032 AB028978 BC152465 NM_015079 NM_144572	-71445	-	TSC_hg19_v1_chr15_+_78441718 AK299970 AK096721 AK296002 BC036227 NM_005530 AK315963 CR749548 BC021967 AK316051	307	+	TSC_hg19_v1_chr15_+_78441734 AK222973	336	+	TSC_hg19_v1_chr15_+_78441739 U07681 AB529210 CU692430 DQ892774 DQ893529 DQ896022	356	+	BT019962|CIB2|10518|calcium and integrin binding family member 2##AB012955|CIB2|10518|calcium and integrin binding family member 2##AK293167|CIB2|10518|calcium and integrin binding family member 2##BC047381|CIB2|10518|calcium and integrin binding family member 2##BC057292|CIB2|10518|calcium and integrin binding family member 2##BC033108|CIB2|10518|calcium and integrin binding family member 2##NM_006383|CIB2|10518|calcium and integrin binding family member 2##NM_001101404|SH2D7|646892|SH2 domain containing 7##AB028978|TBC1D2B|23102|TBC1 domain family, member 2B##BC152465|TBC1D2B|23102|TBC1 domain family, member 2B##NM_015079|TBC1D2B|23102|TBC1 domain family, member 2B##NM_144572|TBC1D2B|23102|TBC1 domain family, member 2B##AK299970|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK296002|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##BC036227|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##NM_005530|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK315963|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##CR749548|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##BC021967|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK316051|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK222973|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##U07681|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##DQ892774|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##DQ893529|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##DQ896022|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha	0.998443	0.0	denovo_WM_7:-83:0.494	denovo_WM_7:-84:0.494
chrX	47004961	47005141	reg1003289.p2	7.927	+	TSC_hg19_v1_chrX_+_47004697 D50912 AM393073	-282	+	TSC_hg19_v1_chrX_+_47004676 BC003089	-367	+	TSC_hg19_v1_chrX_+_47004671 AL137421	-379	+	TSC_hg19_v1_chrX_+_47050192 NM_153280	45096	+	TSC_hg19_v1_chrX_+_47050243 BC013041	45186	+	TSC_hg19_v1_chrX_+_47053200 NM_003334	48149	+	D50912|RBM10|8241|RNA binding motif protein 10##AM393073|RBM10|8241|RNA binding motif protein 10##BC003089|RBM10|8241|RNA binding motif protein 10##AL137421|RBM10|8241|RNA binding motif protein 10##NM_153280|UBA1|7317|ubiquitin-like modifier activating enzyme 1##BC013041|UBA1|7317|ubiquitin-like modifier activating enzyme 1##NM_003334|UBA1|7317|ubiquitin-like modifier activating enzyme 1	1.913314	0.0	denovo_WM_7:-24:0.619
chr5	116221765	116221908	reg1001897.p2	7.926	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-311322	-	TSC_hg19_v1_chr5_+_115898220 D28352	-323612	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-801115	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2102402	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2184975	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2185329	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	2.472365	0.0	denovo_WM_7:69:0.244	denovo_WM_7:70:0.244	denovo_WM_7:71:0.244	denovo_WM_7:72:0.244	denovo_WM_7:-85:0.673
chr19	47781327	47781458	reg1004310.p2	7.923	+	TSC_hg19_v1_chr19_+_47778141 BC022076 BC045749 NM_178511 BC064510	-3256	+	TSC_hg19_v1_chr19_+_47759811 BC002787 BC009743	-21574	+	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	-21631	+	BC008982 NM_001736 TSC_hg19_v1_chr19_+_47813117 M62505	31710	+	AB038237 NM_018485	58978	+	NM_014681 TSC_hg19_v1_chr19_+_47852571 AK304710	71177	+	BC022076|PRR24|255783|proline rich 24##BC045749|PRR24|255783|proline rich 24##NM_178511|PRR24|255783|proline rich 24##BC064510|PRR24|255783|proline rich 24##BC002787|CCDC9|26093|coiled-coil domain containing 9##BC009743|CCDC9|26093|coiled-coil domain containing 9##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9##BC008982|C5AR1|728|complement component 5a receptor 1##NM_001736|C5AR1|728|complement component 5a receptor 1##M62505|C5AR1|728|complement component 5a receptor 1##AB038237|GPR77|27202|G protein-coupled receptor 77##NM_018485|GPR77|27202|G protein-coupled receptor 77##NM_014681|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34##AK304710|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34	0.99545	0.0	
chr1	101823295	101823453	reg1002441.p2	7.922	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-120804	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-120993	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-331941	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	639113	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	639416	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1673409	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	1.991324	0.0	denovo_WM_7:37:0.463	denovo_WM_7:38:0.355	denovo_WM_7:52:0.478	denovo_WM_7:53:0.434
chr2	156002320	156002467	reg1004222.p1	7.921	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-447204	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-1273949	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1667142	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1184297	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1186770	-	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	1289565	+	NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.0	0.0	
chr22	32034743	32034923	reg1002755.p2	7.920	+	TSC_hg19_v1_chr22_-_32026821 BC001482 NM_014338	-8001	-	BC033613 TSC_hg19_v1_chr22_+_32010180	-24667	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	-142287	+	TSC_hg19_v1_chr22_-_32058202 AB528208 CU013140 CU013428 CR456540 DQ656048	23375	-	NM_173566 TSC_hg19_v1_chr22_-_32146119	111295	-	NM_001242897 TSC_hg19_v1_chr22_+_32149953	115115	+	BC001482|PISD|23761|phosphatidylserine decarboxylase##NM_014338|PISD|23761|phosphatidylserine decarboxylase##BC033613|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##CU013140|PISD|23761|phosphatidylserine decarboxylase##CU013428|PISD|23761|phosphatidylserine decarboxylase##CR456540|PISD|23761|phosphatidylserine decarboxylase##NM_173566|PRR14L|253143|proline rich 14-like##NM_001242897|DEPDC5|9681|DEP domain containing 5	2.763229	0.0	denovo_WM_7:-17:0.987	denovo_WM_7:-32:0.939	denovo_WM_7:-50:0.674
chr1	225069050	225069219	reg1004292.p1	7.919	+	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	-264955	+	AB209887 NM_001115113 NM_025160	-447134	-	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	-447374	-	TSC_hg19_v1_chr1_+_225117383 NM_001145154 NM_001373 NM_144989 BC119716 BC119717 BC042869	48231	+	AK222834 TSC_hg19_v1_chr1_-_225615757 L25931 AB209514 BC020079 AK303589 AK312258	546595	-	TSC_hg19_v1_chr1_-_225615798 NM_002296	546667	-	AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)##AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##NM_001145154|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_001373|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_144989|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119716|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119717|DNAH14|127602|dynein, axonemal, heavy chain 14##BC042869|DNAH14|127602|dynein, axonemal, heavy chain 14##AK222834|LBR|3930|lamin B receptor##L25931|LBR|3930|lamin B receptor##AB209514|LBR|3930|lamin B receptor##BC020079|LBR|3930|lamin B receptor##AK303589|LBR|3930|lamin B receptor##AK312258|LBR|3930|lamin B receptor##NM_002296|LBR|3930|lamin B receptor	0.996941	0.0	denovo_WM_7:-10:0.841
chr19	39339971	39340116	reg1004109.p2	7.919	+	CU680054 DQ892926 DQ896175 BC011792 TSC_hg19_v1_chr19_-_39322433 AK301211 AK291860 BC017408 U16660 NM_001398	-17574	-	NM_006149	-36304	-	AK296194 BT007032 CR536544 AF014838 U82953 BC034750 BC003661 BC005146 TSC_hg19_v1_chr19_-_39303586 AB006781 AK290269 AK296604	-36490	-	TSC_hg19_v1_chr19_-_39340505 X16135	409	-	TSC_hg19_v1_chr19_-_39340551 AK313652 BC069184	508	-	AK298384 TSC_hg19_v1_chr19_-_39340578	533	-	DQ892926|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##DQ896175|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##BC011792|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##AK301211|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##AK291860|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##BC017408|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##U16660|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##NM_001398|ECH1|1891|enoyl CoA hydratase 1, peroxisomal##NM_006149|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AK296194|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BT007032|LGALS4|3960|lectin, galactoside-binding, soluble, 4##CR536544|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AF014838|LGALS4|3960|lectin, galactoside-binding, soluble, 4##U82953|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BC034750|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BC003661|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BC005146|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AB006781|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AK290269|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AK296604|LGALS4|3960|lectin, galactoside-binding, soluble, 4##X16135|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK313652|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##BC069184|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L	0.0	0.0	
chr20	61810741	61810838	reg1003741.p1	7.919	+	BC137288 BC137308 NM_080606	-172403	-	TSC_hg19_v1_chr20_+_61584095 AK095473 BC038593	-226664	+	NM_022082 TSC_hg19_v1_chr20_+_61584053 AK125597 BC025312 AK074107	-226759	+	TSC_hg19_v1_chr20_-_61847469 BC050284 NM_017798	36734	-	AY358835 AY358836 AF311388 NM_022161 NM_139317 BC014475 DQ893077 DQ896338 AF301009 AY517497	56552	+	TSC_hg19_v1_chr20_-_61884664 AK308958	73944	-	BC137288|BHLHE23|128408|basic helix-loop-helix family, member e23##BC137308|BHLHE23|128408|basic helix-loop-helix family, member e23##NM_080606|BHLHE23|128408|basic helix-loop-helix family, member e23##AK095473|SLC17A9|63910|solute carrier family 17, member 9##BC038593|SLC17A9|63910|solute carrier family 17, member 9##NM_022082|SLC17A9|63910|solute carrier family 17, member 9##AK125597|SLC17A9|63910|solute carrier family 17, member 9##BC025312|SLC17A9|63910|solute carrier family 17, member 9##AK074107|SLC17A9|63910|solute carrier family 17, member 9##BC050284|YTHDF1|54915|YTH domain family, member 1##NM_017798|YTHDF1|54915|YTH domain family, member 1##AY358835|BIRC7|79444|baculoviral IAP repeat containing 7##AY358836|BIRC7|79444|baculoviral IAP repeat containing 7##AF311388|BIRC7|79444|baculoviral IAP repeat containing 7##NM_022161|BIRC7|79444|baculoviral IAP repeat containing 7##NM_139317|BIRC7|79444|baculoviral IAP repeat containing 7##BC014475|BIRC7|79444|baculoviral IAP repeat containing 7##DQ893077|BIRC7|79444|baculoviral IAP repeat containing 7##DQ896338|BIRC7|79444|baculoviral IAP repeat containing 7##AF301009|BIRC7|79444|baculoviral IAP repeat containing 7##AY517497|BIRC7|79444|baculoviral IAP repeat containing 7##AK308958|NKAIN4|128414|Na+/K+ transporting ATPase interacting 4	0.0	0.861272	CTCF.p2:22:0.824
chr17	73286346	73286526	reg1003806.p1	7.918	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-907	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-964	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-19122	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	103341	-	AK091010 TSC_hg19_v1_chr17_-_73401721	115208	-	TSC_hg19_v1_chr17_-_73401738 BC000631	115298	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	0.0	0.0	
chr6	219127	219250	reg1004206.p2	7.918	+	None	None	None	None	None	None	None	None	None	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	72897	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	73309	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	172576	+	AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4	0.0	0.0	
chr16	84133361	84133479	reg1003110.p1	7.917	+	NM_001080442	-57659	-	TSC_hg19_v1_chr16_+_84002230 AY299331 NM_019065 BC131615 AK127376	-131208	+	NM_182981 TSC_hg19_v1_chr16_+_83986844 AK290383 AY258068 AY037158 BC020434 BC032476 BC093687 BC113417	-146536	+	TSC_hg19_v1_chr16_-_84150441 AK291773 BC114555 BC114961 AK299067	16992	-	TSC_hg19_v1_chr16_-_84150449 BC026330 D42053 NM_003791	17096	-	TSC_hg19_v1_chr16_+_84150646 BC052334	17231	+	NM_001080442|SLC38A8|146167|solute carrier family 38, member 8##AY299331|NECAB2|54550|N-terminal EF-hand calcium binding protein 2##NM_019065|NECAB2|54550|N-terminal EF-hand calcium binding protein 2##BC131615|NECAB2|54550|N-terminal EF-hand calcium binding protein 2##AK127376|NECAB2|54550|N-terminal EF-hand calcium binding protein 2##NM_182981|OSGIN1|29948|oxidative stress induced growth inhibitor 1##AK290383|OSGIN1|29948|oxidative stress induced growth inhibitor 1##AY258068|OSGIN1|29948|oxidative stress induced growth inhibitor 1##AY037158|OSGIN1|29948|oxidative stress induced growth inhibitor 1##BC020434|OSGIN1|29948|oxidative stress induced growth inhibitor 1##BC032476|OSGIN1|29948|oxidative stress induced growth inhibitor 1##BC093687|OSGIN1|29948|oxidative stress induced growth inhibitor 1##BC113417|OSGIN1|29948|oxidative stress induced growth inhibitor 1##AK291773|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##BC114555|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##BC114961|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##AK299067|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##BC026330|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##D42053|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##NM_003791|MBTPS1|8720|membrane-bound transcription factor peptidase, site 1##BC052334|LOC729887|729887|uncharacterized LOC729887	0.999103	0.0	denovo_WM_7:-29:0.310	denovo_WM_7:-30:0.310	denovo_WM_7:-31:0.310
chr3	53074606	53074749	reg1002855.p1	7.917	+	TSC_hg19_v1_chr3_-_52931595 NM_001198974 NM_198563	-143020	-	TSC_hg19_v1_chr3_-_52931547 AY726591 BC047015	-143228	-	NM_205853	-205443	-	TSC_hg19_v1_chr3_-_53079286 NM_001005159	4632	-	TSC_hg19_v1_chr3_-_53080023 BC014614 AF168132	5317	-	TSC_hg19_v1_chr3_-_53080045 AK313965 NM_001005158 NM_016329	5386	-	NM_001198974|TMEM110-MUSTN1|100526772|TMEM110-MUSTN1 readthrough##NM_198563|TMEM110|375346|transmembrane protein 110##AY726591|TMEM110|375346|transmembrane protein 110##BC047015|TMEM110|375346|transmembrane protein 110##NM_205853|MUSTN1|389125|musculoskeletal, embryonic nuclear protein 1##NM_001005159|SFMBT1|51460|Scm-like with four mbt domains 1##BC014614|SFMBT1|51460|Scm-like with four mbt domains 1##AF168132|SFMBT1|51460|Scm-like with four mbt domains 1##AK313965|SFMBT1|51460|Scm-like with four mbt domains 1##NM_001005158|SFMBT1|51460|Scm-like with four mbt domains 1##NM_016329|SFMBT1|51460|Scm-like with four mbt domains 1	0.999721	0.0	denovo_WM_7:-26:0.721
chr6	89326184	89326336	reg1004280.p1	7.917	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-450494	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-471224	-	BC029488 NM_030960 AF203447	-568730	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	346931	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	347048	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	347087	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.198763	0.0	
chr1	212035815	212035972	reg1004562.p2	7.915	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-31763	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-32145	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-186985	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	172997	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	173121	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	173225	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	1.994958	0.0	
chr19	2595792	2595972	reg1004259.p1	7.914	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-119644	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-138922	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-138946	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	106813	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	106860	-	AK124445 TSC_hg19_v1_chr19_-_2717420	121467	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.0	0.0	
chr19	45550827	45550970	reg1001917.p2	7.914	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	-8575	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-46156	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-92244	+	BC019352 NM_145288	28789	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	31615	+	TSC_hg19_v1_chr19_+_45596205 BC035704	45317	+	AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37	0.738614	0.0	denovo_WM_7:-68:0.739
chr4	39615098	39615212	reg1003129.p1	7.913	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-85529	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-85980	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-86148	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	25401	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	84649	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	364183	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.0	0.0	
chr3	4535495	4535636	reg1004361.p2	7.912	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-369	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-437	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-534	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	485551	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	485616	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	485789	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.992182	0.0	
chr2	32927037	32927185	reg1003799.p1	7.911	+	NM_001193509 NM_017735 AK299196 BC063791 TSC_hg19_v1_chr2_+_32853177 AK027570	-73977	+	TSC_hg19_v1_chr2_+_32582308 AF265555	-344801	+	TSC_hg19_v1_chr2_+_32582131 NM_016252	-344998	+	NM_206943	245257	+	TSC_hg19_v1_chr2_+_33359657 NM_000627 NM_001166264 NM_001166265 NM_001166266 AB208801 BC130289 BC144127 BC144128 M34057 AB384737 AF489528	432594	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	734337	+	NM_001193509|TTC27|55622|tetratricopeptide repeat domain 27##NM_017735|TTC27|55622|tetratricopeptide repeat domain 27##AK299196|TTC27|55622|tetratricopeptide repeat domain 27##BC063791|TTC27|55622|tetratricopeptide repeat domain 27##AK027570|TTC27|55622|tetratricopeptide repeat domain 27##AF265555|BIRC6|57448|baculoviral IAP repeat containing 6##NM_016252|BIRC6|57448|baculoviral IAP repeat containing 6##NM_206943|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_000627|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166264|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166265|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166266|LTBP1|4052|latent transforming growth factor beta binding protein 1##AB208801|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC130289|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144127|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144128|LTBP1|4052|latent transforming growth factor beta binding protein 1##M34057|LTBP1|4052|latent transforming growth factor beta binding protein 1##AF489528|LTBP1|4052|latent transforming growth factor beta binding protein 1##AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)	1.646555	0.0	denovo_WM_7:-9:0.519	denovo_WM_7:-25:0.968
chr3	24306233	24306383	reg1003988.p1	7.911	+	TSC_hg19_v1_chr3_+_23987516 AK301925 NM_001145425	-318746	+	TSC_hg19_v1_chr3_+_23986776 NM_005126 D16815 AK313464 BC045613 BC070035	-319493	+	NM_001253380 AY347528 L25899 AB529129 BT019672 CU677095 CU687134	-347036	+	GQ456948 GQ456949 GQ869479 GQ919288 AY286469 AY286468 AY286465 AY286471 TSC_hg19_v1_chr3_-_24536294 AY286467 AY286466 AK096628 M26747 NM_000461 NM_001128176 NM_001128177 NM_001252634 X04707	229936	-	AY286470 TSC_hg19_v1_chr3_-_24536493	230169	-	TSC_hg19_v1_chr3_+_25469751 AF157483 NM_016152	1163451	+	AK301925|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001145425|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_005126|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##D16815|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##AK313464|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC045613|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC070035|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001253380|RPL15|6138|ribosomal protein L15##AY347528|RPL15|6138|ribosomal protein L15##L25899|RPL15|6138|ribosomal protein L15##BT019672|RPL15|6138|ribosomal protein L15##GQ456948|THRB|7068|thyroid hormone receptor, beta##GQ456949|THRB|7068|thyroid hormone receptor, beta##GQ869479|THRB|7068|thyroid hormone receptor, beta##GQ919288|THRB|7068|thyroid hormone receptor, beta##AY286469|THRB|7068|thyroid hormone receptor, beta##AY286468|THRB|7068|thyroid hormone receptor, beta##AY286465|THRB|7068|thyroid hormone receptor, beta##AY286471|THRB|7068|thyroid hormone receptor, beta##AY286467|THRB|7068|thyroid hormone receptor, beta##AY286466|THRB|7068|thyroid hormone receptor, beta##AK096628|THRB|7068|thyroid hormone receptor, beta##M26747|THRB|7068|thyroid hormone receptor, beta##NM_000461|THRB|7068|thyroid hormone receptor, beta##NM_001128176|THRB|7068|thyroid hormone receptor, beta##NM_001128177|THRB|7068|thyroid hormone receptor, beta##NM_001252634|THRB|7068|thyroid hormone receptor, beta##X04707|THRB|7068|thyroid hormone receptor, beta##AY286470|THRB|7068|thyroid hormone receptor, beta##AF157483|RARB|5915|retinoic acid receptor, beta##NM_016152|RARB|5915|retinoic acid receptor, beta	0.982804	1.047064	denovo_WM_7:-13:0.607	denovo_WM_7:-15:0.279	CTCF.p2:35:0.972
chr6	18215870	18216045	reg1003887.p1	7.910	+	TSC_hg19_v1_chr6_+_18155652 BC113093 NM_153042 AK125318	-60302	+	S62904 AK310420 TSC_hg19_v1_chr6_-_18155309 U12387 BC005339 BC009596 NM_000367	-60629	-	AY324850 BC103888 BC103889 BC103890 NM_198586	-93107	-	X64229 TSC_hg19_v1_chr6_-_18264759 BC012442 AK312616 AK298089 AK294079 BC035259 AK297749 NM_001134709 NM_003472	48764	-	AK096832 NM_182757 AB076367 BC063311 AL832329	171710	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	1621678	+	BC113093|KDM1B|221656|lysine (K)-specific demethylase 1B##NM_153042|KDM1B|221656|lysine (K)-specific demethylase 1B##AK125318|KDM1B|221656|lysine (K)-specific demethylase 1B##S62904|TPMT|7172|thiopurine S-methyltransferase##AK310420|TPMT|7172|thiopurine S-methyltransferase##U12387|TPMT|7172|thiopurine S-methyltransferase##BC005339|TPMT|7172|thiopurine S-methyltransferase##BC009596|TPMT|7172|thiopurine S-methyltransferase##NM_000367|TPMT|7172|thiopurine S-methyltransferase##AY324850|NHLRC1|378884|NHL repeat containing 1##BC103888|NHLRC1|378884|NHL repeat containing 1##BC103889|NHLRC1|378884|NHL repeat containing 1##BC103890|NHLRC1|378884|NHL repeat containing 1##NM_198586|NHLRC1|378884|NHL repeat containing 1##X64229|DEK|7913|DEK oncogene##BC012442|DEK|7913|DEK oncogene##AK312616|DEK|7913|DEK oncogene##AK298089|DEK|7913|DEK oncogene##AK294079|DEK|7913|DEK oncogene##BC035259|DEK|7913|DEK oncogene##AK297749|DEK|7913|DEK oncogene##NM_001134709|DEK|7913|DEK oncogene##NM_003472|DEK|7913|DEK oncogene##AK096832|RNF144B|255488|ring finger protein 144B##NM_182757|RNF144B|255488|ring finger protein 144B##AB076367|RNF144B|255488|ring finger protein 144B##BC063311|RNF144B|255488|ring finger protein 144B##AL832329|RNF144B|255488|ring finger protein 144B##BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	1.081053	0.0	denovo_WM_7:22:0.835
chr8	100315490	100315603	reg1004287.p1	7.910	+	TSC_hg19_v1_chr8_+_100025537 BC094749	-289956	+	AJ608772 AJ608773 TSC_hg19_v1_chr8_+_100025501	-290034	+	AY223814 AY223815 AY223816 AY223817 AY223818 NM_015243 NM_017890 NM_152564 NM_181661 TSC_hg19_v1_chr8_+_100025498	-290051	+	TSC_hg19_v1_chr8_-_100905892 X13238	590333	-	TSC_hg19_v1_chr8_-_100905910 AK311791	590375	-	NM_004374	590695	-	BC094749|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608772|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608773|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223814|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223815|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223816|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223817|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223818|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_015243|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_017890|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_152564|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_181661|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##X13238|COX6C|1345|cytochrome c oxidase subunit VIc##AK311791|COX6C|1345|cytochrome c oxidase subunit VIc##NM_004374|COX6C|1345|cytochrome c oxidase subunit VIc	0.998626	0.0	
chr6	144388378	144388510	reg1003720.p1	7.908	+	EF100438 EF100439 EF100440 EF100441 EF100442 EF100443 EF100444 EF100445 TSC_hg19_v1_chr6_-_144385724 NM_001080951 NM_001080955	-2754	-	TSC_hg19_v1_chr6_-_144329394 AK314570 BC059359 AK096331 NM_001080952 NM_001080953 NM_001080954 NM_001080956 NM_002656 NM_006718 AJ311395 U72621	-58980	-	EF100446 EF100447 EF100448 EF100449 EF100450 EF100451 EF100452 TSC_hg19_v1_chr6_-_144329322	-59156	-	AB528231 AM393071 BC000198 TSC_hg19_v1_chr6_-_144416703 AK312079 AK074417	28227	-	NM_031287 TSC_hg19_v1_chr6_-_144416757	28318	-	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	83277	+	EF100438|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100439|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100440|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100441|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100442|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100443|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100444|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100445|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080951|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080955|PLAGL1|5325|pleiomorphic adenoma gene-like 1##AK314570|PLAGL1|5325|pleiomorphic adenoma gene-like 1##BC059359|HYMAI|57061|hydatidiform mole associated and imprinted (non-protein coding)##AK096331|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080952|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080953|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080954|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080956|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_002656|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_006718|PLAGL1|5325|pleiomorphic adenoma gene-like 1##AJ311395|PLAGL1|5325|pleiomorphic adenoma gene-like 1##U72621|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100446|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100447|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100448|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100449|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100450|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100451|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100452|PLAGL1|5325|pleiomorphic adenoma gene-like 1##AM393071|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##BC000198|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK312079|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK074417|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##NM_031287|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11	0.976179	0.0	denovo_WM_7:32:0.748
chr7	90718832	90718939	reg1003086.p1	7.907	+	AK295086 AK296406 AK307484 AK316026 TSC_hg19_v1_chr7_+_90339175	-379725	+	AB020641 BC152436 BC167152 BC167156 NM_012395 BC136477 AK289782 AB384534 BC152388	-380102	+	TSC_hg19_v1_chr7_+_90225634 AK297974 AF119833	-493076	+	BC017719 TSC_hg19_v1_chr7_+_90893724	174816	+	TSC_hg19_v1_chr7_+_90893747 AB017363 NM_003505 AF072872 BC051271 AK314996	174991	+	TSC_hg19_v1_chr7_-_91509979 BC108648 AL832861 AK298469 AK313641 NM_006980 Y09615 AK222730 AK311568	791130	-	AK295086|CDK14|5218|cyclin-dependent kinase 14##AK296406|CDK14|5218|cyclin-dependent kinase 14##AK307484|CDK14|5218|cyclin-dependent kinase 14##AK316026|CDK14|5218|cyclin-dependent kinase 14##AB020641|CDK14|5218|cyclin-dependent kinase 14##BC152436|CDK14|5218|cyclin-dependent kinase 14##BC167152|CDK14|5218|cyclin-dependent kinase 14##BC167156|CDK14|5218|cyclin-dependent kinase 14##NM_012395|CDK14|5218|cyclin-dependent kinase 14##BC136477|CDK14|5218|cyclin-dependent kinase 14##AK289782|CDK14|5218|cyclin-dependent kinase 14##BC152388|CDK14|5218|cyclin-dependent kinase 14##AK297974|CDK14|5218|cyclin-dependent kinase 14##AF119833|CDK14|5218|cyclin-dependent kinase 14##BC017719|FZD1|8321|frizzled family receptor 1##AB017363|FZD1|8321|frizzled family receptor 1##NM_003505|FZD1|8321|frizzled family receptor 1##AF072872|FZD1|8321|frizzled family receptor 1##BC051271|FZD1|8321|frizzled family receptor 1##AK314996|FZD1|8321|frizzled family receptor 1##BC108648|MTERF|7978|mitochondrial transcription termination factor##AL832861|MTERF|7978|mitochondrial transcription termination factor##AK298469|MTERF|7978|mitochondrial transcription termination factor##AK313641|MTERF|7978|mitochondrial transcription termination factor##NM_006980|MTERF|7978|mitochondrial transcription termination factor##Y09615|MTERF|7978|mitochondrial transcription termination factor##AK222730|MTERF|7978|mitochondrial transcription termination factor	0.994811	0.994244	denovo_WM_7:7:0.905	CTCF.p2:-21:0.994
chr1	29112166	29112340	reg1004564.p2	7.906	+	TSC_hg19_v1_chr1_+_29063503 AK303833 NM_001172828 AF432214 AF155095 AF192968 DQ892157 DQ895352 CU678040 AB451335 AB451484	-48716	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	-48970	+	BC001473 AK315195 AK315436 AF173868 AF203694 AK023126 TSC_hg19_v1_chr1_+_28995361	-116925	+	NM_000911 U07882	26400	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	101338	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	101404	+	AK303833|YTHDF2|51441|YTH domain family, member 2##NM_001172828|YTHDF2|51441|YTH domain family, member 2##AF432214|YTHDF2|51441|YTH domain family, member 2##AF155095|YTHDF2|51441|YTH domain family, member 2##AF192968|YTHDF2|51441|YTH domain family, member 2##DQ892157|YTHDF2|51441|YTH domain family, member 2##DQ895352|YTHDF2|51441|YTH domain family, member 2##AB451335|YTHDF2|51441|YTH domain family, member 2##AB451484|YTHDF2|51441|YTH domain family, member 2##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2##BC001473|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315195|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315436|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF173868|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF203694|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK023126|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_000911|OPRD1|4985|opioid receptor, delta 1##U07882|OPRD1|4985|opioid receptor, delta 1##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.994087	0.0	denovo_WM_7:-33:0.814
chr1	55437177	55437312	reg1004379.p2	7.905	+	NM_014762 TSC_hg19_v1_chr1_-_55352925	-84312	-	TSC_hg19_v1_chr1_-_55352904 D13643	-84346	-	TSC_hg19_v1_chr1_-_55352884 AF261758	-84359	-	BC029775 NM_182532	9220	+	AK129999 AY034632 NM_057176 BC103898 BC103899 BC103900	27377	+	NM_174936 TSC_hg19_v1_chr1_+_55505192	67926	+	NM_014762|DHCR24|1718|24-dehydrocholesterol reductase##D13643|DHCR24|1718|24-dehydrocholesterol reductase##AF261758|DHCR24|1718|24-dehydrocholesterol reductase##BC029775|TMEM61|199964|transmembrane protein 61##NM_182532|TMEM61|199964|transmembrane protein 61##AK129999|BSND|7809|Bartter syndrome, infantile, with sensorineural deafness (Barttin)##AY034632|BSND|7809|Bartter syndrome, infantile, with sensorineural deafness (Barttin)##NM_057176|BSND|7809|Bartter syndrome, infantile, with sensorineural deafness (Barttin)##BC103898|BSND|7809|Bartter syndrome, infantile, with sensorineural deafness (Barttin)##BC103899|BSND|7809|Bartter syndrome, infantile, with sensorineural deafness (Barttin)##BC103900|BSND|7809|Bartter syndrome, infantile, with sensorineural deafness (Barttin)##NM_174936|PCSK9|255738|proprotein convertase subtilisin/kexin type 9	0.0	0.0	
chr6_cox_hap2	4729723	4729903	reg1003805.p2	7.905	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.029796	0.0	denovo_WM_7:-7:0.527	denovo_WM_7:-8:0.470
chr10	30818781	30818961	reg1004059.p2	7.904	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	-95750	+	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	-95932	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-180638	-	AF139543 BC066294 NM_183058	99764	-	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	469581	-	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	501950	-	AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438	0.896553	0.0	denovo_WM_7:32:0.752
chr16	57032027	57032173	reg1004133.p1	7.903	+	TSC_hg19_v1_chr16_+_57023474 AK097030	-8640	+	M30185 AK297699 NM_000078 TSC_hg19_v1_chr16_+_56995861 AK291586 BC025739 EU176529 CU693046 BT020064 M83573	-36263	+	AK302167 TSC_hg19_v1_chr16_+_56966053 AB034989 AK223233 AK291565 AK292088 AK304800 BC009739 DQ837586 AF055001 D14695 BC000086 BC008320 BC032673 DQ891867 EU176642 CR457116 AF055003	-65959	+	AK074182 NM_032206	18885	+	AF389420 EF452236 TSC_hg19_v1_chr16_+_57054697	22560	+	TSC_hg19_v1_chr16_+_57126462 NM_152727	94365	+	AK097030|NLRC5|84166|NLR family, CARD domain containing 5##M30185|CETP|1071|cholesteryl ester transfer protein, plasma##AK297699|CETP|1071|cholesteryl ester transfer protein, plasma##NM_000078|CETP|1071|cholesteryl ester transfer protein, plasma##AK291586|CETP|1071|cholesteryl ester transfer protein, plasma##BC025739|CETP|1071|cholesteryl ester transfer protein, plasma##EU176529|CETP|1071|cholesteryl ester transfer protein, plasma##BT020064|CETP|1071|cholesteryl ester transfer protein, plasma##M83573|CETP|1071|cholesteryl ester transfer protein, plasma##AK302167|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AB034989|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK223233|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK291565|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK292088|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK304800|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC009739|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ837586|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055001|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##D14695|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC000086|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC008320|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC032673|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ891867|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##EU176642|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##CR457116|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055003|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK074182|NLRC5|84166|NLR family, CARD domain containing 5##NM_032206|NLRC5|84166|NLR family, CARD domain containing 5##AF389420|NLRC5|84166|NLR family, CARD domain containing 5##EF452236|NLRC5|84166|NLR family, CARD domain containing 5##NM_152727|CPNE2|221184|copine II	0.999866	0.0	denovo_WM_7:14:0.295	denovo_WM_7:15:0.295	denovo_WM_7:16:0.295
chr2	42866112	42866250	reg1004146.p4	7.903	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-70284	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-70460	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-144479	+	AY158687 AB528920 AB083055 BC063549 NM_148962	125119	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	153570	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	587164	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.98615	0.0	denovo_WM_7:30:0.807
chr19	2624530	2624657	reg1004216.p1	7.900	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-148355	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-167633	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-167657	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	78102	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	78149	-	AK124445 TSC_hg19_v1_chr19_-_2717420	92756	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	1.965288	0.0	denovo_WM_7:-36:0.904	denovo_WM_7:-55:0.227	denovo_WM_7:-56:0.234	denovo_WM_7:-57:0.243	denovo_WM_7:-58:0.244
chr9	67722082	67722202	reg1004397.p1	7.899	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-1168867	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-1227946	-	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	-1263646	-	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	204674	+	TSC_hg19_v1_chr9_+_68726468 AK311167	1004360	+	TSC_hg19_v1_chr9_+_69065493 AK311167	1343396	+	BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene	0.998861	0.0	denovo_WM_7:42:0.314	denovo_WM_7:43:0.314	denovo_WM_7:44:0.314
chr2	111807723	111807895	reg1003791.p1	7.898	+	AK300513 NM_001142807 BC022268	-317630	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-371987	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-372166	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	70678	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	833817	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	833952	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.893937	0.0	denovo_WM_7:36:0.419	denovo_WM_7:37:0.475
chr16	10868363	10868487	reg1001904.p1	7.897	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-30721	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-79660	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-193935	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	44123	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	102687	+	BC071683 TSC_hg19_v1_chr16_-_11036171	167741	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.992872	0.0	
chr5	77176028	77176163	reg1002872.p4	7.897	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-103963	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-241581	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-241666	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	414330	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	414382	-	TSC_hg19_v1_chr5_-_77590495 U81504	414397	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	1.979055	0.0	denovo_WM_7:33:0.698	denovo_WM_7:35:0.222	denovo_WM_7:51:0.751
chr7	30240848	30240990	reg1003872.p1	7.897	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	-66337	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-172628	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-172918	+	AF513707 NM_147128	83003	+	TSC_hg19_v1_chr7_+_30324515 AF527533	83630	+	TSC_hg19_v1_chr7_+_30324634 AY054122	83737	+	NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AY054122|ZNRF2|223082|zinc and ring finger 2	0.0	0.0	
chr22	37976201	37976348	reg1003444.p1	7.896	+	M87842 BC059782 NM_006498 CR456512	-274	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-19801	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-60967	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	28288	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	28496	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	28609	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	1.991812	0.0	denovo_WM_7:47:0.982
chr6	109196019	109196193	reg1003534.p1	7.896	+	TSC_hg19_v1_chr6_+_109169624 AK294574 NM_032131 AK292499 BC030603	-26485	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	-313849	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	-314031	+	AF033121 NM_001199934	134084	-	TSC_hg19_v1_chr6_-_109330747 AF033120	134610	-	TSC_hg19_v1_chr6_-_109330756 AK290551 NM_001199933	134658	-	AK294574|ARMC2|84071|armadillo repeat containing 2##NM_032131|ARMC2|84071|armadillo repeat containing 2##AK292499|ARMC2|84071|armadillo repeat containing 2##BC030603|ARMC2|84071|armadillo repeat containing 2##AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##AF033121|SESN1|27244|sestrin 1##NM_001199934|SESN1|27244|sestrin 1##AF033120|SESN1|27244|sestrin 1##AK290551|SESN1|27244|sestrin 1##NM_001199933|SESN1|27244|sestrin 1	0.992685	0.0	denovo_WM_7:-59:0.476	denovo_WM_7:-60:0.425
chr2	206948505	206948685	reg1004277.p1	7.894	+	TSC_hg19_v1_chr2_+_206547371 AK290934	-401234	+	TSC_hg19_v1_chr2_+_206547224 AK130198 AL833606 NM_003872 NM_018534 NM_201264 NM_201266 NM_201267 NM_201279 BX537423	-401417	+	TSC_hg19_v1_chr2_+_205410716 AB073472 AB092439 AF428250 AF428251 AF466152	-1537876	+	TSC_hg19_v1_chr2_-_206950902 AK096585 NM_017759	2316	-	AK295987 NM_001199984	75322	-	X61100 AK098395 BC018900 BC022368 TSC_hg19_v1_chr2_-_207024145 AK300585 BC030833 AK295705 AK295966 AK298320 BC004133 NM_001199981 NM_001199982 NM_001199983 NM_005006	75577	-	AK290934|NRP2|8828|neuropilin 2##AK130198|NRP2|8828|neuropilin 2##AL833606|NRP2|8828|neuropilin 2##NM_003872|NRP2|8828|neuropilin 2##NM_018534|NRP2|8828|neuropilin 2##NM_201264|NRP2|8828|neuropilin 2##NM_201266|NRP2|8828|neuropilin 2##NM_201267|NRP2|8828|neuropilin 2##NM_201279|NRP2|8828|neuropilin 2##BX537423|NRP2|8828|neuropilin 2##AB073472|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AB092439|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428250|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428251|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF466152|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AK096585|INO80D|54891|INO80 complex subunit D##NM_017759|INO80D|54891|INO80 complex subunit D##AK295987|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199984|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##X61100|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK098395|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC018900|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC022368|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK300585|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC030833|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295705|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295966|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK298320|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC004133|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199981|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199982|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199983|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_005006|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)	0.997028	0.0	denovo_WM_7:0:0.313	denovo_WM_7:-1:0.313	denovo_WM_7:-2:0.313
chr16	22482873	22483023	reg1004251.p1	7.893	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	-97153	-	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	-174200	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	-265275	+	NM_001135865 BC036263 AK296338 CU690320	42034	+	TSC_hg19_v1_chr16_+_22825482 AY359095 AK313463	342554	+	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	342903	+	DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AY359095|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK313463|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2	0.0	0.0	
chr3	169490000	169490180	reg1002573.p2	7.893	+	BC007289 AK055346 NM_032487	-2448	-	BC128029 TSC_hg19_v1_chr3_-_169482848	-7242	-	BC069498 GQ352634 U43292 AK304098 NM_001205194 NM_004991	-108601	-	TSC_hg19_v1_chr3_+_169490577 AK092022	506	+	BX648128 NM_001185118 NM_018657	762	+	AK312527 BC020610 TSC_hg19_v1_chr3_+_169491186 AK304281 AK021646 AK307916 AF076249 AF155508 AF148848 BC033620	1106	+	BC007289|ARPM1|84517|actin related protein M1##AK055346|ARPM1|84517|actin related protein M1##NM_032487|ARPM1|84517|actin related protein M1##BC128029|TERC|7012|telomerase RNA component##BC069498|MECOM|2122|MDS1 and EVI1 complex locus##GQ352634|MECOM|2122|MDS1 and EVI1 complex locus##U43292|MECOM|2122|MDS1 and EVI1 complex locus##AK304098|MECOM|2122|MDS1 and EVI1 complex locus##NM_001205194|MECOM|2122|MDS1 and EVI1 complex locus##NM_004991|MECOM|2122|MDS1 and EVI1 complex locus##AK092022|MYNN|55892|myoneurin##BX648128|MYNN|55892|myoneurin##NM_001185118|MYNN|55892|myoneurin##NM_018657|MYNN|55892|myoneurin##AK312527|MYNN|55892|myoneurin##BC020610|MYNN|55892|myoneurin##AK304281|MYNN|55892|myoneurin##AK021646|MYNN|55892|myoneurin##AK307916|MYNN|55892|myoneurin##AF076249|MYNN|55892|myoneurin##AF155508|MYNN|55892|myoneurin##AF148848|MYNN|55892|myoneurin##BC033620|MYNN|55892|myoneurin	1.971562	0.0	denovo_WM_7:94:0.375	denovo_WM_7:95:0.328
chr9	97142532	97142640	reg1003020.p1	7.893	+	TSC_hg19_v1_chr9_+_97136850 NM_032558	-5753	+	HQ258506 BC130390 BC143798 NM_017561	-51672	-	TSC_hg19_v1_chr9_+_97021599 NM_194320 AK289742 AK093956	-120996	+	CR536483 HQ258389 BC113632 BC117477 NM_003837 Y10812	213454	-	AF073475 CU680450 D26054 D26055 D26056 AY544122 TSC_hg19_v1_chr9_-_97401681	259050	-	TSC_hg19_v1_chr9_-_97401794 BC012927 M19922	259200	-	NM_032558|HIATL1|84641|hippocampus abundant transcript-like 1##HQ258506|FAM22F|54754|family with sequence similarity 22, member F##BC130390|FAM22F|54754|family with sequence similarity 22, member F##BC143798|FAM22F|54754|family with sequence similarity 22, member F##NM_017561|FAM22F|54754|family with sequence similarity 22, member F##NM_194320|ZNF169|169841|zinc finger protein 169##AK289742|ZNF169|169841|zinc finger protein 169##AK093956|ZNF169|169841|zinc finger protein 169##CR536483|FBP2|8789|fructose-1,6-bisphosphatase 2##HQ258389|FBP2|8789|fructose-1,6-bisphosphatase 2##BC113632|FBP2|8789|fructose-1,6-bisphosphatase 2##BC117477|FBP2|8789|fructose-1,6-bisphosphatase 2##NM_003837|FBP2|8789|fructose-1,6-bisphosphatase 2##Y10812|FBP2|8789|fructose-1,6-bisphosphatase 2##AF073475|FBP1|2203|fructose-1,6-bisphosphatase 1##D26054|FBP1|2203|fructose-1,6-bisphosphatase 1##D26055|FBP1|2203|fructose-1,6-bisphosphatase 1##D26056|FBP1|2203|fructose-1,6-bisphosphatase 1##AY544122|FBP1|2203|fructose-1,6-bisphosphatase 1##BC012927|FBP1|2203|fructose-1,6-bisphosphatase 1##M19922|FBP1|2203|fructose-1,6-bisphosphatase 1	0.997297	0.0	denovo_WM_7:-23:0.216	denovo_WM_7:-24:0.376	denovo_WM_7:-25:0.378
chr17	43229467	43229572	reg1003413.p2	7.891	+	TSC_hg19_v1_chr17_+_43225936 BC006460	-3584	+	TSC_hg19_v1_chr17_+_43225841 AK023624 AB021179	-3668	+	NM_006460	-4836	+	AK056946 NM_144608	8744	+	TSC_hg19_v1_chr17_+_43299284 AY278319 NM_005892 BC111564	69841	+	AK096807 TSC_hg19_v1_chr17_-_43319268	89677	-	BC006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK023624|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AB021179|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##NM_006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK056946|HEXIM2|124790|hexamethylene bis-acetamide inducible 2##NM_144608|HEXIM2|124790|hexamethylene bis-acetamide inducible 2##AY278319|FMNL1|752|formin-like 1##NM_005892|FMNL1|752|formin-like 1##BC111564|FMNL1|752|formin-like 1	0.0	0.0	
chr18	52989076	52989256	reg1000282.p1	7.891	+	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	-164	-	FR748222 NM_001243236	-19384	-	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-362479	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	79672	-	FR748208 TSC_hg19_v1_chr18_-_53068947	79778	-	AK095041 NM_001243232	82059	-	M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4##AK095041|TCF4|6925|transcription factor 4##NM_001243232|TCF4|6925|transcription factor 4	0.0	0.0	
chr3	53877140	53877279	reg1003317.p1	7.889	+	NM_000720 NM_001128839 NM_001128840 M83566 EU363339	-348098	+	TSC_hg19_v1_chr3_+_53528709 M76558	-348550	+	TSC_hg19_v1_chr3_-_53381571 AB590177 CU675659 DQ893260 DQ896589 BC007439 AK295205 AB075507 AK001969 AY146651 AJ275986 NM_018403	-495616	-	TSC_hg19_v1_chr3_-_53880427 NM_018397	3210	-	TSC_hg19_v1_chr3_+_53880576 NM_018725	3363	+	TSC_hg19_v1_chr3_+_53880594 AK307749	3386	+	NM_000720|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128839|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128840|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M83566|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##EU363339|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M76558|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##DQ893260|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##DQ896589|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##BC007439|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK295205|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AB075507|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK001969|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AY146651|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AJ275986|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018403|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018397|CHDH|55349|choline dehydrogenase##NM_018725|IL17RB|55540|interleukin 17 receptor B##AK307749|IL17RB|55540|interleukin 17 receptor B	0.995811	0.0	denovo_WM_7:13:0.456	denovo_WM_7:14:0.456
chr7	74039885	74040065	reg1003151.p2	7.887	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-171540	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-171667	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-171811	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	32046	+	TSC_hg19_v1_chr7_+_74072046 BC070484	32069	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	32147	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	1.087049	0.16067	
chr13	25754987	25755140	reg1003554.p1	7.886	+	AK055049 BC041392 TSC_hg19_v1_chr13_-_25746427	-8698	-	TSC_hg19_v1_chr13_-_25745778 NM_152704 NM_199138	-9246	-	AK098343 BC032653 TSC_hg19_v1_chr13_-_25745701	-9403	-	AB384771 AF406619 AM392681 AM392837 CU691804 TSC_hg19_v1_chr13_-_25861510	106385	-	AK314587 TSC_hg19_v1_chr13_-_25861584 BC040012	106512	-	TSC_hg19_v1_chr13_-_25861621 AL832017 AK093237 AX748005 NM_004685	106592	-	AK055049|FAM123A|219287|family with sequence similarity 123A##BC041392|FAM123A|219287|family with sequence similarity 123A##NM_152704|FAM123A|219287|family with sequence similarity 123A##NM_199138|FAM123A|219287|family with sequence similarity 123A##AK098343|FAM123A|219287|family with sequence similarity 123A##BC032653|FAM123A|219287|family with sequence similarity 123A##AF406619|MTMR6|9107|myotubularin related protein 6##AM392681|MTMR6|9107|myotubularin related protein 6##AM392837|MTMR6|9107|myotubularin related protein 6##AK314587|MTMR6|9107|myotubularin related protein 6##BC040012|MTMR6|9107|myotubularin related protein 6##AL832017|MTMR6|9107|myotubularin related protein 6##AK093237|MTMR6|9107|myotubularin related protein 6##NM_004685|MTMR6|9107|myotubularin related protein 6	0.995591	0.0	denovo_WM_7:28:0.441	denovo_WM_7:29:0.441
chr11	47528945	47529086	reg1004322.p1	7.885	+	BC031079 NM_198700	-12943	-	AK304430 AJ007988 DQ893717 AF248648 NM_001025596 NM_001172640 AF267533 AF267534	-18468	-	AK310002 BC004196 Z33905 AF449218 NM_005055 NM_032645	-58307	-	AB210019 NM_001172639	16524	-	TSC_hg19_v1_chr11_-_47574683 BC036782 U63289	45628	-	TSC_hg19_v1_chr11_-_47574804 NM_006560	45770	-	BC031079|CELF1|10658|CUGBP, Elav-like family member 1##NM_198700|CELF1|10658|CUGBP, Elav-like family member 1##AK304430|CELF1|10658|CUGBP, Elav-like family member 1##AJ007988|CELF1|10658|CUGBP, Elav-like family member 1##DQ893717|CELF1|10658|CUGBP, Elav-like family member 1##AF248648|CELF1|10658|CUGBP, Elav-like family member 1##NM_001025596|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172640|CELF1|10658|CUGBP, Elav-like family member 1##AF267533|CELF1|10658|CUGBP, Elav-like family member 1##AF267534|CELF1|10658|CUGBP, Elav-like family member 1##AK310002|RAPSN|5913|receptor-associated protein of the synapse##BC004196|RAPSN|5913|receptor-associated protein of the synapse##Z33905|RAPSN|5913|receptor-associated protein of the synapse##AF449218|RAPSN|5913|receptor-associated protein of the synapse##NM_005055|RAPSN|5913|receptor-associated protein of the synapse##NM_032645|RAPSN|5913|receptor-associated protein of the synapse##AB210019|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172639|CELF1|10658|CUGBP, Elav-like family member 1##BC036782|CELF1|10658|CUGBP, Elav-like family member 1##U63289|CELF1|10658|CUGBP, Elav-like family member 1##NM_006560|CELF1|10658|CUGBP, Elav-like family member 1	1.027561	0.0	denovo_WM_7:1:0.959
chr3	14186027	14186166	reg1002947.p1	7.885	+	TSC_hg19_v1_chr3_+_14166632 AY358625 AM393160 AB528257 CU678382	-19434	+	TSC_hg19_v1_chr3_+_14166582 AK075010	-19511	+	TSC_hg19_v1_chr3_+_14166553 AK027877	-19530	+	HM113488 TSC_hg19_v1_chr3_-_14220102 BC016620 AK289761 AK295711 AK311039 D21089 NM_001145769 NM_004628	34025	-	NM_014463 TSC_hg19_v1_chr3_+_14220319	34178	+	TSC_hg19_v1_chr3_+_14220336 AF182418 AF182289 BC007055 AK312189	34238	+	AY358625|TMEM43|79188|transmembrane protein 43##AM393160|TMEM43|79188|transmembrane protein 43##AK075010|TMEM43|79188|transmembrane protein 43##AK027877|TMEM43|79188|transmembrane protein 43##HM113488|XPC|7508|xeroderma pigmentosum, complementation group C##BC016620|XPC|7508|xeroderma pigmentosum, complementation group C##AK289761|XPC|7508|xeroderma pigmentosum, complementation group C##AK295711|XPC|7508|xeroderma pigmentosum, complementation group C##AK311039|XPC|7508|xeroderma pigmentosum, complementation group C##D21089|XPC|7508|xeroderma pigmentosum, complementation group C##NM_001145769|XPC|7508|xeroderma pigmentosum, complementation group C##NM_004628|XPC|7508|xeroderma pigmentosum, complementation group C##NM_014463|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182418|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182289|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC007055|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312189|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.966921	0.0	denovo_WM_7:-10:0.239	denovo_WM_7:-11:0.652
chr6	194175	194317	reg1004865.p1	7.885	+	None	None	None	None	None	None	None	None	None	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	97839	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	98251	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	197518	+	AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4	0.989051	0.0	denovo_WM_7:13:0.301	denovo_WM_7:14:0.421	denovo_WM_7:15:0.267
chr20	48325474	48325640	reg1003849.p1	7.884	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-140868	-	BC110572 BC110573 NM_004975	-226378	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-430362	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	4673	-	AB004550 TSC_hg19_v1_chr20_-_48330359	4799	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	4909	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.998861	0.0	denovo_WM_7:-78:0.314	denovo_WM_7:-79:0.314	denovo_WM_7:-80:0.314
chr6	34648745	34648925	reg1004079.p1	7.884	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-124739	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-166181	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-214931	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	15711	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	15791	-	NM_003093	76035	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.965449	0.0	denovo_WM_7:1:0.775
chr17	46179351	46179457	reg1002067.p3	7.883	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-583	-	NM_006807 TSC_hg19_v1_chr17_-_46178605	-821	-	BX647976 TSC_hg19_v1_chr17_+_46126143	-53263	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	5581	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	5748	+	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	328134	-	U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##NM_006807|CBX1|10951|chromobox homolog 1##BX647976|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1	0.996443	0.0	
chr4	25987079	25987161	reg1002866.p1	7.883	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-71256	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-122566	-	NM_001177999 AK314514	-329030	+	L07875 BC020780 NM_005349 NM_203283	334199	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	335189	+	TSC_hg19_v1_chr4_+_26322635 AK302230	335516	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.999208	0.0	denovo_WM_7:-15:0.239	denovo_WM_7:-16:0.239	denovo_WM_7:-17:0.239	denovo_WM_7:-18:0.239
chr1	119482015	119482157	reg1003753.p1	7.881	+	AB527095 AK091816 AX747199 AY555274 BX648110 NM_206996	-754273	-	TSC_hg19_v1_chr1_+_118472364 NM_006784 AK292438 AF083217 BC128385 BC128454 BC148244	-1009708	+	BC058836 TSC_hg19_v1_chr1_+_118472357	-1009733	+	AK127536 NM_152380	50092	-	TSC_hg19_v1_chr1_+_119683039 BC063600 BC043601	200940	+	TSC_hg19_v1_chr1_-_119683274 BC021722 CU692202 BC039889 AK223197 AJ242739 AK296799 BC044575 AK313740 AK300295 NM_015836 NM_201263	201183	-	AK091816|SPAG17|200162|sperm associated antigen 17##AY555274|SPAG17|200162|sperm associated antigen 17##BX648110|SPAG17|200162|sperm associated antigen 17##NM_206996|SPAG17|200162|sperm associated antigen 17##NM_006784|WDR3|10885|WD repeat domain 3##AK292438|WDR3|10885|WD repeat domain 3##AF083217|WDR3|10885|WD repeat domain 3##BC058836|WDR3|10885|WD repeat domain 3##AK127536|TBX15|6913|T-box 15##NM_152380|TBX15|6913|T-box 15##BC021722|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC039889|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK223197|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AJ242739|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK296799|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC044575|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK313740|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK300295|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_015836|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_201263|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial	1.990869	0.0	denovo_WM_7:-27:0.395	denovo_WM_7:-30:0.312	denovo_WM_7:-46:0.256	denovo_WM_7:-47:0.311
chr15	60876955	60877135	reg1004073.p2	7.880	+	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	-105771	-	AB587463 BC068065 BC009564 BC021114 BC052567 BC001388 BC013843 D00017 TSC_hg19_v1_chr15_-_60690186 AK222542 BX640598 AK297923 BC015834 BC023990 BC066955 BC093056 D28364 NM_001002857 NM_001002858 NM_001136015 NM_004039 AK309956 BC016774	-186884	-	TSC_hg19_v1_chr15_+_60296509 AK314075	-580496	+	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	7634	-	U04899 U04898 NM_002943 NM_134260	42640	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	644379	-	BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##BC068065|ANXA2|302|annexin A2##BC009564|ANXA2|302|annexin A2##BC021114|ANXA2|302|annexin A2##BC052567|ANXA2|302|annexin A2##BC001388|ANXA2|302|annexin A2##BC013843|ANXA2|302|annexin A2##D00017|ANXA2|302|annexin A2##AK222542|ANXA2|302|annexin A2##BX640598|ANXA2|302|annexin A2##AK297923|ANXA2|302|annexin A2##BC015834|ANXA2|302|annexin A2##BC023990|ANXA2|302|annexin A2##BC066955|ANXA2|302|annexin A2##BC093056|ANXA2|302|annexin A2##D28364|ANXA2|302|annexin A2##NM_001002857|ANXA2|302|annexin A2##NM_001002858|ANXA2|302|annexin A2##NM_001136015|ANXA2|302|annexin A2##NM_004039|ANXA2|302|annexin A2##BC016774|ANXA2|302|annexin A2##AK314075|FOXB1|27023|forkhead box B1##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A	0.0	0.0	
chr1	78596569	78596713	reg1005420.p1	7.880	+	TSC_hg19_v1_chr1_+_78511749 AK225941 AB073737 AB528004 CU690284	-84879	+	BC036075 NM_017655 TSC_hg19_v1_chr1_+_78511713	-84978	+	TSC_hg19_v1_chr1_+_78470622 U40992 AK313205 AB209922 BC034721 NM_007034	-126027	+	NM_000959 NM_001039585 AK292845 AK312816 AY485530 L24470 BC112965 AF004021	360143	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	489490	+	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	518857	+	AK225941|GIPC2|54810|GIPC PDZ domain containing family, member 2##AB073737|GIPC2|54810|GIPC PDZ domain containing family, member 2##BC036075|GIPC2|54810|GIPC PDZ domain containing family, member 2##NM_017655|GIPC2|54810|GIPC PDZ domain containing family, member 2##U40992|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##AK313205|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##AB209922|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##BC034721|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##NM_007034|DNAJB4|11080|DnaJ (Hsp40) homolog, subfamily B, member 4##NM_000959|PTGFR|5737|prostaglandin F receptor (FP)##NM_001039585|PTGFR|5737|prostaglandin F receptor (FP)##AK292845|PTGFR|5737|prostaglandin F receptor (FP)##AK312816|PTGFR|5737|prostaglandin F receptor (FP)##AY485530|PTGFR|5737|prostaglandin F receptor (FP)##L24470|PTGFR|5737|prostaglandin F receptor (FP)##BC112965|PTGFR|5737|prostaglandin F receptor (FP)##AF004021|PTGFR|5737|prostaglandin F receptor (FP)##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44	0.0	0.982994	CTCF.p2:-2:0.983
chr12	122986793	122986922	reg1004040.p1	7.879	+	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	-1339	-	TSC_hg19_v1_chr12_-_122985404 BC065918	-1430	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	-79620	-	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	24651	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	24947	+	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	201015	-	AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2	0.998963	0.0	
chr9	125844257	125844393	reg1004252.p1	7.878	+	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-47480	+	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	-48458	+	AK131449 TSC_hg19_v1_chr9_+_125703299 BC020609 NM_012197 AK022408 BC054492 AF161357 AJ011679	-141097	+	TSC_hg19_v1_chr9_-_125874882 AK025814	30574	-	TSC_hg19_v1_chr9_-_125941308 BC002693	96995	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	186495	-	BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##AK131449|RABGAP1|23637|RAB GTPase activating protein 1##BC020609|RABGAP1|23637|RAB GTPase activating protein 1##NM_012197|RABGAP1|23637|RAB GTPase activating protein 1##AK022408|RABGAP1|23637|RAB GTPase activating protein 1##BC054492|RABGAP1|23637|RAB GTPase activating protein 1##AF161357|RABGAP1|23637|RAB GTPase activating protein 1##AJ011679|RABGAP1|23637|RAB GTPase activating protein 1##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein	0.99932	0.050552	denovo_WM_7:33:0.732
chr7	157143222	157143369	reg1004168.p1	7.877	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-13584	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-119289	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-211612	+	TSC_hg19_v1_chr7_+_157647233 BC034557	503979	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1237158	-	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	1354182	-	AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2	0.998932	0.0	denovo_WM_7:97:0.638
chr3	197793743	197793906	reg1003994.p2	7.876	+	AJ312398 AJ312399 NM_001136049 NM_033029 TSC_hg19_v1_chr3_+_197687092 AL832783 AB527180 AM920777 AK299119 AM920778	-106726	+	BC016156 TSC_hg19_v1_chr3_-_197686873 AK095094 AL136889 NM_032263	-106960	-	BC010949 TSC_hg19_v1_chr3_+_197677063 AY871273 NM_000996 AB055768 X52966 AK026542 BC001037 BC061890 BC017093	-116748	+	BC042518 TSC_hg19_v1_chr3_-_197807579 BC053879	13751	-	NM_001145248	85412	+	None	None	None	AJ312398|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AJ312399|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##NM_001136049|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##NM_033029|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AL832783|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AM920777|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AK299119|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##AM920778|LMLN|89782|leishmanolysin-like (metallopeptidase M8 family)##BC016156|IQCG|84223|IQ motif containing G##AK095094|IQCG|84223|IQ motif containing G##AL136889|IQCG|84223|IQ motif containing G##NM_032263|IQCG|84223|IQ motif containing G##BC010949|RPL35A|6165|ribosomal protein L35a##AY871273|RPL35A|6165|ribosomal protein L35a##NM_000996|RPL35A|6165|ribosomal protein L35a##AB055768|RPL35A|6165|ribosomal protein L35a##X52966|RPL35A|6165|ribosomal protein L35a##AK026542|RPL35A|6165|ribosomal protein L35a##BC001037|RPL35A|6165|ribosomal protein L35a##BC061890|RPL35A|6165|ribosomal protein L35a##BC017093|RPL35A|6165|ribosomal protein L35a##BC042518|ANKRD18DP|348840|ankyrin repeat domain 18D, pseudogene##BC053879|ANKRD18DP|348840|ankyrin repeat domain 18D, pseudogene##NM_001145248|FAM157A|728262|family with sequence similarity 157, member A	1.988572	0.0	denovo_WM_7:-57:0.330	denovo_WM_7:-58:0.264	denovo_WM_7:-75:0.266	denovo_WM_7:-76:0.332
chr3	173302013	173302155	reg1004846.p1	7.875	+	BC032555 NM_014932	-185841	+	BC034496 AF345909 AF404758 AK093041 AX747878 NM_031955	-443076	-	BC112086 AK023267 NM_018098 AB528037 DQ847274 TSC_hg19_v1_chr3_+_172472359	-829782	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	856636	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	1275006	+	TSC_hg19_v1_chr3_-_176914267 BX648935	3612166	-	BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BC034496|SPATA16|83893|spermatogenesis associated 16##AF345909|SPATA16|83893|spermatogenesis associated 16##AF404758|SPATA16|83893|spermatogenesis associated 16##AK093041|SPATA16|83893|spermatogenesis associated 16##NM_031955|SPATA16|83893|spermatogenesis associated 16##BC112086|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK023267|ECT2|1894|epithelial cell transforming sequence 2 oncogene##NM_018098|ECT2|1894|epithelial cell transforming sequence 2 oncogene##DQ847274|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.992318	0.0	denovo_WM_7:-41:0.736
chr17	36125008	36125156	reg1004123.p1	7.874	+	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	-20031	-	AB528419 BT007126 CR536572 DQ891528 EU176615 TSC_hg19_v1_chr17_-_36104898	-20196	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	-121605	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	158911	+	BC033670 BC047739 AL136860 AK301823 BC071680 BC078140 AK302064 AK313329 NM_001123391 NM_032258	223543	-	BC067792 TSC_hg19_v1_chr17_-_36413224	288155	-	HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##BT007126|HNF1B|6928|HNF1 homeobox B##CR536572|HNF1B|6928|HNF1 homeobox B##DQ891528|HNF1B|6928|HNF1 homeobox B##EU176615|HNF1B|6928|HNF1 homeobox B##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##AK302064|TBC1D3|729873|TBC1 domain family, member 3##AK313329|TBC1D3|729873|TBC1 domain family, member 3##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##BC067792|LOC440434|440434|aminopeptidase puromycin sensitive pseudogene	0.991187	0.0	denovo_WM_7:37:0.715
chr17	57287286	57287401	reg1004163.p3	7.874	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	-54223	+	NM_018304	-54484	+	NM_001100595 NM_182620	-54544	-	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	54	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	10555	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	121675	+	AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11##NM_018304|PRR11|55771|proline rich 11##NM_001100595|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_182620|SKA2|348235|spindle and kinetochore associated complex subunit 2##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)	0.0	0.0	
chr16	9038422	9038562	reg1003747.p2	7.872	+	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	-75632	-	NM_001042476 BC001333	-76240	-	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-146794	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	18803	-	TSC_hg19_v1_chr16_+_9185545 NM_014117	147048	+	TSC_hg19_v1_chr16_+_9185577 BC113570	147111	+	BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##BC113570|C16orf72|29035|chromosome 16 open reading frame 72	0.101568	0.0	
chr2	179347247	179347389	reg1003214.p1	7.872	+	TSC_hg19_v1_chr2_+_179345280 AF286162 BC044567 EU832321 EU832406	-1888	+	TSC_hg19_v1_chr2_+_179345234 AK074209	-2086	+	AK314459 NM_019091 TSC_hg19_v1_chr2_+_179345209	-2115	+	TSC_hg19_v1_chr2_+_179387947 AK093733	40642	+	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	312383	-	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	324785	-	AF286162|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##BC044567|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##EU832321|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##EU832406|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK074209|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK314459|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##NM_019091|PLEKHA3|65977|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3##AK093733|LOC100506866|100506866|uncharacterized LOC100506866##X98114|TTN|7273|titin##X98115|TTN|7273|titin##X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin	0.992571	0.0	
chr10	91847477	91847657	reg1000909.p2	7.871	+	TSC_hg19_v1_chr10_+_91498725 AK025628	-348800	+	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	-386192	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-442243	-	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	769879	-	BC047526 NM_000872 NM_019859 NM_019860 TSC_hg19_v1_chr10_-_92617758	770166	-	TSC_hg19_v1_chr10_+_92631241 BC006991	783690	+	AK025628|KIF20B|9585|kinesin family member 20B##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##BC047526|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_000872|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019859|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019860|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##BC006991|RPP30|10556|ribonuclease P/MRP 30kDa subunit	0.996212	0.0	denovo_WM_7:43:0.249	denovo_WM_7:44:0.249	denovo_WM_7:45:0.249	denovo_WM_7:46:0.249
chrX	49025435	49025565	reg1003632.p1	7.871	+	TSC_hg19_v1_chrX_+_49020239 AK025340 AK094251 NM_001099680	-5246	+	BC067800 NM_001099681 NM_001099682 NM_024859 BC027995	-6305	+	AB209806 CU674194 BC000397 BC003148 NM_015698 TSC_hg19_v1_chrX_-_48980086 AK310728 U66359	-45400	-	NM_002668 TSC_hg19_v1_chrX_+_49028254 L09604 BC109066 AB591027	2763	+	TSC_hg19_v1_chrX_-_49042840 BT007423 CR457211 DQ891474 DQ894662 AB464065 AJ011654 NM_006150 AK300866 AK314788 BC002468 BC016856	17290	-	TSC_hg19_v1_chrX_-_49042854 AK299407	17354	-	AK025340|MAGIX|79917|MAGI family member, X-linked##AK094251|MAGIX|79917|MAGI family member, X-linked##NM_001099680|MAGIX|79917|MAGI family member, X-linked##BC067800|MAGIX|79917|MAGI family member, X-linked##NM_001099681|MAGIX|79917|MAGI family member, X-linked##NM_001099682|MAGIX|79917|MAGI family member, X-linked##NM_024859|MAGIX|79917|MAGI family member, X-linked##BC027995|MAGIX|79917|MAGI family member, X-linked##AB209806|GPKOW|27238|G patch domain and KOW motifs##BC000397|GPKOW|27238|G patch domain and KOW motifs##BC003148|GPKOW|27238|G patch domain and KOW motifs##NM_015698|GPKOW|27238|G patch domain and KOW motifs##U66359|GPKOW|27238|G patch domain and KOW motifs##NM_002668|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##L09604|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##BC109066|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##BT007423|PRICKLE3|4007|prickle homolog 3 (Drosophila)##CR457211|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ891474|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ894662|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AJ011654|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_006150|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK300866|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK314788|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC002468|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC016856|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK299407|PRICKLE3|4007|prickle homolog 3 (Drosophila)	1.98241	0.0	denovo_WM_7:-52:0.210	denovo_WM_7:-74:0.216
chr3	47855389	47855501	reg1002833.p2	7.870	+	AK096791 TSC_hg19_v1_chr3_+_47844627 BC020126 BC038417 BC015029 AB020697 BC063510	-10789	+	BC047335 NM_014966 NM_138615 TSC_hg19_v1_chr3_+_47844624 BC028405 AK291266	-10934	+	TSC_hg19_v1_chr3_-_47823419 AK302541	-31938	-	TSC_hg19_v1_chr3_+_47866475 AK002076	11043	+	TSC_hg19_v1_chr3_-_47934000 AK054696	78585	-	TSC_hg19_v1_chr3_-_47957477 BX649077	102098	-	AK096791|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC020126|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC038417|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC015029|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AB020697|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC063510|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC047335|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##NM_014966|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##NM_138615|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC028405|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK291266|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK302541|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##AK002076|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK054696|MAP4|4134|microtubule-associated protein 4	1.811608	0.0	denovo_WM_7:19:0.792
chr21	34576611	34576763	reg1002219.p2	7.867	+	TSC_hg19_v1_chr21_+_34444006 BC011252	-132642	+	TSC_hg19_v1_chr21_+_34442554 AB463154 DQ896828 BC026989	-134126	+	TSC_hg19_v1_chr21_+_34442446 BC033290 NM_138983 AL834450 AB209791	-134235	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	25533	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	25592	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	25715	+	BC011252|OLIG1|116448|oligodendrocyte transcription factor 1##DQ896828|OLIG1|116448|oligodendrocyte transcription factor 1##BC026989|OLIG1|116448|oligodendrocyte transcription factor 1##BC033290|OLIG1|116448|oligodendrocyte transcription factor 1##NM_138983|OLIG1|116448|oligodendrocyte transcription factor 1##AL834450|OLIG1|116448|oligodendrocyte transcription factor 1##AB209791|OLIG1|116448|oligodendrocyte transcription factor 1##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2	1.982021	0.0	denovo_WM_7:84:0.263	denovo_WM_7:85:0.220
chr8	66791610	66791778	reg1003847.p1	7.867	+	TSC_hg19_v1_chr8_-_66754300 AK292680	-37402	-	NM_001242318	-37726	-	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	-90443	-	NM_033105 BC016742 AF368276 AL133660	142125	+	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	247646	+	BC002599 BC011031 AK075431 NM_000756	299073	-	AK292680|PDE7A|5150|phosphodiesterase 7A##NM_001242318|PDE7A|5150|phosphodiesterase 7A##HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone	0.013832	0.0	
chr19	19179799	19179956	reg1004267.p1	7.866	+	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	-5068	+	BC067125 TSC_hg19_v1_chr19_+_19144690	-35217	+	TSC_hg19_v1_chr19_+_19144524 BC056161	-35330	+	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	69377	-	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	69398	-	TSC_hg19_v1_chr19_-_19281067 AK057210	101190	-	NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##BC067125|ARMC6|93436|armadillo repeat containing 6##BC056161|ARMC6|93436|armadillo repeat containing 6##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A##AK057210|MEF2B|100271849|myocyte enhancer factor 2B	0.999143	0.0	denovo_WM_7:-33:0.739
chrX	11381052	11381218	reg1003387.p1	7.866	+	AF436849 BC069118 M86932 NM_001142 NM_182680 NM_182681 BC074951	-69593	+	AF177663 NM_013423 AK297713	-97027	-	TSC_hg19_v1_chrX_+_11129467 BC001691 BC095455 U36787	-251666	+	AF012272 AF022212 AF117067 NM_006125 NM_013427	302685	-	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	395208	+	NM_001193270 AK300814	395582	+	AF436849|AMELX|265|amelogenin, X-linked##BC069118|AMELX|265|amelogenin, X-linked##M86932|AMELX|265|amelogenin, X-linked##NM_001142|AMELX|265|amelogenin, X-linked##NM_182680|AMELX|265|amelogenin, X-linked##NM_182681|AMELX|265|amelogenin, X-linked##BC074951|AMELX|265|amelogenin, X-linked##AF177663|ARHGAP6|395|Rho GTPase activating protein 6##NM_013423|ARHGAP6|395|Rho GTPase activating protein 6##AK297713|ARHGAP6|395|Rho GTPase activating protein 6##BC001691|HCCS|3052|holocytochrome c synthase##BC095455|HCCS|3052|holocytochrome c synthase##U36787|HCCS|3052|holocytochrome c synthase##AF012272|ARHGAP6|395|Rho GTPase activating protein 6##AF022212|ARHGAP6|395|Rho GTPase activating protein 6##AF117067|ARHGAP6|395|Rho GTPase activating protein 6##NM_006125|ARHGAP6|395|Rho GTPase activating protein 6##NM_013427|ARHGAP6|395|Rho GTPase activating protein 6##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)	0.971919	0.0	denovo_WM_7:23:0.922
chr12	6409041	6409186	reg1004894.p1	7.864	+	TSC_hg19_v1_chr12_+_6309565 NM_001769 AK315219 AK308700 AK296332 AK309527 AY966455 X60111 AK296894 AK298431 BC011988 M38690 AY423720 DQ891314 DQ894498 AB590218 CU680148 L34068	-99543	+	X04385 AK301216 TSC_hg19_v1_chr12_-_6233752 AK292122 M17588 X04146 AK298097 BC022258 NM_000552	-175354	-	AJ272204 NM_020373	-353716	-	AK001527 NM_018173 BC104751 BC105961 BC109095	10520	+	TSC_hg19_v1_chr12_+_6419886 BC040273	10772	+	AK023741 NM_001144856	10985	+	NM_001769|CD9|928|CD9 molecule##AK315219|CD9|928|CD9 molecule##AK308700|CD9|928|CD9 molecule##AK296332|CD9|928|CD9 molecule##AK309527|CD9|928|CD9 molecule##AY966455|CD9|928|CD9 molecule##X60111|CD9|928|CD9 molecule##AK296894|CD9|928|CD9 molecule##AK298431|CD9|928|CD9 molecule##BC011988|CD9|928|CD9 molecule##M38690|CD9|928|CD9 molecule##AY423720|CD9|928|CD9 molecule##DQ891314|CD9|928|CD9 molecule##DQ894498|CD9|928|CD9 molecule##L34068|CD9|928|CD9 molecule##X04385|VWF|7450|von Willebrand factor##AK301216|VWF|7450|von Willebrand factor##AK292122|VWF|7450|von Willebrand factor##M17588|VWF|7450|von Willebrand factor##X04146|VWF|7450|von Willebrand factor##AK298097|VWF|7450|von Willebrand factor##BC022258|VWF|7450|von Willebrand factor##NM_000552|VWF|7450|von Willebrand factor##AJ272204|ANO2|57101|anoctamin 2##NM_020373|ANO2|57101|anoctamin 2##AK001527|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##NM_018173|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC104751|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC105961|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC109095|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC040273|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##AK023741|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##NM_001144856|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6	0.973401	0.0	denovo_WM_7:-24:0.470	denovo_WM_7:-25:0.504
chr7	107821616	107821732	reg1004509.p1	7.863	+	BC142619 BC140804 BC144591 AF028816 AK300385 NM_007356	-50882	-	AB384752 TSC_hg19_v1_chr7_-_107643594 BC113455 M61916 BX648251 AK303501 AK309921 AK307611 BC044633 BC052598 NM_002291	-178069	-	AK300077 TSC_hg19_v1_chr7_+_107531630 AK225289 AK310220 AB209703 BC018648 BC018696 J03620 AB529125 CU676276	-290018	+	AJ001057 AB385311 NM_001037132	58878	-	TSC_hg19_v1_chr7_-_108096830 BC114570 BC115736 AB002341 BX538010 AK299870 BC098401 NM_001193582 NM_001193583 NM_001193584 NM_005010	275255	-	TSC_hg19_v1_chr7_-_108142934 BC005203 AK002115	321298	-	BC142619|LAMB4|22798|laminin, beta 4##BC140804|LAMB4|22798|laminin, beta 4##BC144591|LAMB4|22798|laminin, beta 4##AF028816|LAMB4|22798|laminin, beta 4##AK300385|LAMB4|22798|laminin, beta 4##NM_007356|LAMB4|22798|laminin, beta 4##BC113455|LAMB1|3912|laminin, beta 1##M61916|LAMB1|3912|laminin, beta 1##BX648251|LAMB1|3912|laminin, beta 1##AK303501|LAMB1|3912|laminin, beta 1##AK309921|LAMB1|3912|laminin, beta 1##AK307611|LAMB1|3912|laminin, beta 1##BC044633|LAMB1|3912|laminin, beta 1##BC052598|LAMB1|3912|laminin, beta 1##NM_002291|LAMB1|3912|laminin, beta 1##AK300077|DLD|1738|dihydrolipoamide dehydrogenase##AK225289|DLD|1738|dihydrolipoamide dehydrogenase##AK310220|DLD|1738|dihydrolipoamide dehydrogenase##AB209703|DLD|1738|dihydrolipoamide dehydrogenase##BC018648|DLD|1738|dihydrolipoamide dehydrogenase##BC018696|DLD|1738|dihydrolipoamide dehydrogenase##J03620|DLD|1738|dihydrolipoamide dehydrogenase##AJ001057|NRCAM|4897|neuronal cell adhesion molecule##NM_001037132|NRCAM|4897|neuronal cell adhesion molecule##BC114570|NRCAM|4897|neuronal cell adhesion molecule##BC115736|NRCAM|4897|neuronal cell adhesion molecule##AB002341|NRCAM|4897|neuronal cell adhesion molecule##BX538010|NRCAM|4897|neuronal cell adhesion molecule##AK299870|NRCAM|4897|neuronal cell adhesion molecule##BC098401|NRCAM|4897|neuronal cell adhesion molecule##NM_001193582|NRCAM|4897|neuronal cell adhesion molecule##NM_001193583|NRCAM|4897|neuronal cell adhesion molecule##NM_001193584|NRCAM|4897|neuronal cell adhesion molecule##NM_005010|NRCAM|4897|neuronal cell adhesion molecule##BC005203|PNPLA8|50640|patatin-like phospholipase domain containing 8##AK002115|PNPLA8|50640|patatin-like phospholipase domain containing 8	0.558931	0.190801	denovo_WM_7:-29:0.528
chr16	3155948	3156128	reg1004546.p1	7.862	+	TSC_hg19_v1_chr16_-_3149286 AK074736	-6756	-	BC114452 AK027455 NM_032805	-13189	-	BC105602 TSC_hg19_v1_chr16_+_3115641 BC018782 NM_001012632 M59807 NM_001012636 AB590933 EU339107 JN546102	-40312	+	TSC_hg19_v1_chr16_+_3162586 NM_001042428 NM_003456 AK313009 AF060865 BC002810	6557	+	TSC_hg19_v1_chr16_-_3184862 AF098968	28833	-	AF017433 TSC_hg19_v1_chr16_+_3184980	28914	+	AK074736|ZSCAN10|84891|zinc finger and SCAN domain containing 10##BC114452|ZSCAN10|84891|zinc finger and SCAN domain containing 10##AK027455|ZSCAN10|84891|zinc finger and SCAN domain containing 10##NM_032805|ZSCAN10|84891|zinc finger and SCAN domain containing 10##BC105602|IL32|9235|interleukin 32##BC018782|IL32|9235|interleukin 32##NM_001012632|IL32|9235|interleukin 32##M59807|IL32|9235|interleukin 32##NM_001012636|IL32|9235|interleukin 32##EU339107|IL32|9235|interleukin 32##NM_001042428|ZNF205|7755|zinc finger protein 205##NM_003456|ZNF205|7755|zinc finger protein 205##AK313009|ZNF205|7755|zinc finger protein 205##AF060865|ZNF205|7755|zinc finger protein 205##BC002810|ZNF205|7755|zinc finger protein 205##AF017433|ZNF213|7760|zinc finger protein 213	1.600675	0.0	denovo_WM_7:28:0.720	denovo_WM_7:62:0.326
chr4	26301174	26301354	reg1003331.p1	7.862	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-385400	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-436710	-	NM_001177999 AK314514	-643174	+	L07875 BC020780 NM_005349 NM_203283	20055	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	21045	+	TSC_hg19_v1_chr4_+_26322635 AK302230	21372	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.999607	0.0	
chr7	72801705	72801841	reg1004332.p1	7.861	+	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	-59481	+	AK057366 AY081948 AY081949 NM_178125	-59689	-	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	-78949	-	NM_003508 BC026333	46337	+	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	134710	-	TSC_hg19_v1_chr7_-_72936538 AF084479	134776	-	NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##NM_003508|FZD9|8326|frizzled family receptor 9##BC026333|FZD9|8326|frizzled family receptor 9##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B	0.998517	0.0	denovo_WM_7:-16:0.753	denovo_WM_7:-17:0.231
chr15	75300703	75300824	reg1003981.p2	7.856	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-12856	+	AK000381 NM_017793	-50989	-	CU675593 AY034074 BC002497 BC007270 TSC_hg19_v1_chr15_-_75249114	-51739	-	NM_021823 TSC_hg19_v1_chr15_+_75315930	15165	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	15218	+	AK128205 TSC_hg19_v1_chr15_+_75491259	190483	+	AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK000381|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_017793|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AY034074|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC002497|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC007270|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK128205|C15orf39|56905|chromosome 15 open reading frame 39	1.953167	0.0	denovo_WM_7:18:0.208	denovo_WM_7:21:0.425	denovo_WM_7:87:0.449	denovo_WM_7:88:0.449
chr22	36773335	36773513	reg1003397.p1	7.856	+	D11393 TSC_hg19_v1_chr22_-_36697021	-76410	-	BC011915 TSC_hg19_v1_chr22_-_36681760	-91661	-	TSC_hg19_v1_chr22_+_36649178 AF305224 AK303919 AK313752 AK298053 BC113867 BC114475 BC127186 BC143038 BC143039 BC017331 AK296099	-124235	+	TSC_hg19_v1_chr22_-_36783906 AB290175 CR456526	10462	-	TSC_hg19_v1_chr22_-_36783943 M81105	10528	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	10555	-	D11393|MYH9|4627|myosin, heavy chain 9, non-muscle##BC011915|MYH9|4627|myosin, heavy chain 9, non-muscle##AF305224|APOL1|8542|apolipoprotein L, 1##AK303919|APOL1|8542|apolipoprotein L, 1##AK313752|APOL1|8542|apolipoprotein L, 1##AK298053|APOL1|8542|apolipoprotein L, 1##BC113867|APOL1|8542|apolipoprotein L, 1##BC114475|APOL1|8542|apolipoprotein L, 1##BC127186|APOL1|8542|apolipoprotein L, 1##BC143038|APOL1|8542|apolipoprotein L, 1##BC143039|APOL1|8542|apolipoprotein L, 1##BC017331|APOL1|8542|apolipoprotein L, 1##AK296099|APOL1|8542|apolipoprotein L, 1##AB290175|MYH9|4627|myosin, heavy chain 9, non-muscle##CR456526|MYH9|4627|myosin, heavy chain 9, non-muscle##M81105|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle	0.339113	0.0	
chr2	46559360	46559509	reg1005380.p1	7.856	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	-34459	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	-34843	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-680360	+	NM_001145051	147269	+	BC034808 NM_080653	187661	-	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	210415	+	U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q	0.997875	0.0	denovo_WM_7:-14:0.897
chr1	117087168	117087332	reg1004324.p1	7.855	+	TSC_hg19_v1_chr1_-_116961216 AK309389	-126012	-	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	-126060	-	AK296362 NM_001160234	-161259	+	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	26365	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	26427	-	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	123133	-	AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3	0.149612	0.0	
chr19	2698983	2699162	reg1004070.p2	7.855	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-222834	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-242112	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-242136	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	3623	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	3670	-	AK124445 TSC_hg19_v1_chr19_-_2717420	18277	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.998167	0.0	
chr12	49189711	49189861	reg1004728.p1	7.854	+	TSC_hg19_v1_chr12_-_49182812 AB007882 NM_020983 BC064923	-6978	-	AK225224 NM_015270 AF250226	-11893	-	AF045161 EF688064 TSC_hg19_v1_chr12_-_49110514 AF048730 AK290990 NM_001240	-79168	-	NM_001206917 AK304537 AK300901	18452	+	TSC_hg19_v1_chr12_+_49208615 AK122911	18859	+	TSC_hg19_v1_chr12_+_49209373 NM_001206916 AK297639 AK316323	19550	+	AB007882|ADCY6|112|adenylate cyclase 6##NM_020983|ADCY6|112|adenylate cyclase 6##BC064923|ADCY6|112|adenylate cyclase 6##AK225224|ADCY6|112|adenylate cyclase 6##NM_015270|ADCY6|112|adenylate cyclase 6##AF250226|ADCY6|112|adenylate cyclase 6##AF045161|CCNT1|904|cyclin T1##EF688064|CCNT1|904|cyclin T1##AF048730|CCNT1|904|cyclin T1##AK290990|CCNT1|904|cyclin T1##NM_001240|CCNT1|904|cyclin T1##NM_001206917|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK304537|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK300901|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK122911|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##NM_001206916|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK297639|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK316323|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit	0.0	0.84474	CTCF.p2:16:0.845
chr15	50716946	50717097	reg1004337.p2	7.853	+	TSC_hg19_v1_chr15_+_50716601 AK292400 BX537420 NM_001128610 NM_001128611 NM_005154 AK296480 BC038801 D29956 BC015545 BC110590 BC092443 BC026954 BC051345	-400	+	TSC_hg19_v1_chr15_+_50647681 BX537481	-69350	+	NM_002041 NM_005254 NM_016654 NM_016655 NM_181427	-69417	-	NM_203494	121880	-	TSC_hg19_v1_chr15_-_50978746 BC128987 BC128988	261745	-	TSC_hg19_v1_chr15_-_50978923 AK000124	261918	-	AK292400|USP8|9101|ubiquitin specific peptidase 8##BX537420|USP8|9101|ubiquitin specific peptidase 8##NM_001128610|USP8|9101|ubiquitin specific peptidase 8##NM_001128611|USP8|9101|ubiquitin specific peptidase 8##NM_005154|USP8|9101|ubiquitin specific peptidase 8##AK296480|USP8|9101|ubiquitin specific peptidase 8##BC038801|USP8|9101|ubiquitin specific peptidase 8##D29956|USP8|9101|ubiquitin specific peptidase 8##BC015545|USP8|9101|ubiquitin specific peptidase 8##BC110590|USP8|9101|ubiquitin specific peptidase 8##BC092443|USP8|9101|ubiquitin specific peptidase 8##BC026954|USP8|9101|ubiquitin specific peptidase 8##BC051345|USP8|9101|ubiquitin specific peptidase 8##BX537481|LOC100129387|100129387|uncharacterized LOC100129387##NM_002041|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_005254|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016654|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016655|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_181427|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_203494|USP50|373509|ubiquitin specific peptidase 50##BC128987|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##BC128988|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK000124|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7	0.978181	0.0	denovo_WM_7:9:0.934
chr15	67834131	67834311	reg1004150.p1	7.852	+	TSC_hg19_v1_chr15_-_67814131 BC047537	-20065	-	TSC_hg19_v1_chr15_+_67813533 NM_001143936 AK294012 AY726587	-20674	+	TSC_hg19_v1_chr15_+_67547171 BC039463 NM_001031715 NM_022784 AY014282 AK292478 AK304303 BC031041 BC048964 BC039292 AK022538 CU690588	-287047	+	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	801	+	AK293459 NM_001206804	7120	+	NM_001031807	283719	+	BC047537|LOC100506686|100506686|uncharacterized LOC100506686##NM_001143936|C15orf61|145853|chromosome 15 open reading frame 61##AK294012|C15orf61|145853|chromosome 15 open reading frame 61##AY726587|C15orf61|145853|chromosome 15 open reading frame 61##BC039463|IQCH|64799|IQ motif containing H##NM_001031715|IQCH|64799|IQ motif containing H##NM_022784|IQCH|64799|IQ motif containing H##AY014282|IQCH|64799|IQ motif containing H##AK292478|IQCH|64799|IQ motif containing H##AK304303|IQCH|64799|IQ motif containing H##BC031041|IQCH|64799|IQ motif containing H##BC048964|IQCH|64799|IQ motif containing H##BC039292|IQCH|64799|IQ motif containing H##AK022538|IQCH|64799|IQ motif containing H##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5##AK293459|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001206804|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001031807|SKOR1|390598|SKI family transcriptional corepressor 1	0.990794	0.0	denovo_WM_7:-15:0.237	denovo_WM_7:-16:0.237	denovo_WM_7:-17:0.237	denovo_WM_7:-18:0.237
chr16	67383180	67383319	reg1004231.p2	7.851	+	AK311487 NM_001161575 AK297329 AK309897 AK001866 AK292311 AY313780 AK301766	-1971	+	TSC_hg19_v1_chr16_+_67360728 AY963267 BC026156 NM_018296 BC018031	-22497	+	BC070103 BC094790 AK302748 AK302567 BC117335 NM_001100915 AK097481	-22605	-	TSC_hg19_v1_chr16_-_67427402 AF132972 AF078846 BC000691 NM_015964 NM_016140	44130	-	TSC_hg19_v1_chr16_-_67450360 NM_013304 U90653 BC021908	67048	-	TSC_hg19_v1_chr16_+_67465023 U26726 BC036780 BC064536 NM_000196 U14631	81781	+	AK311487|LRRC36|55282|leucine rich repeat containing 36##NM_001161575|LRRC36|55282|leucine rich repeat containing 36##AK297329|LRRC36|55282|leucine rich repeat containing 36##AK309897|LRRC36|55282|leucine rich repeat containing 36##AK001866|LRRC36|55282|leucine rich repeat containing 36##AK292311|LRRC36|55282|leucine rich repeat containing 36##AY313780|LRRC36|55282|leucine rich repeat containing 36##AK301766|LRRC36|55282|leucine rich repeat containing 36##AY963267|LRRC36|55282|leucine rich repeat containing 36##BC026156|LRRC36|55282|leucine rich repeat containing 36##NM_018296|LRRC36|55282|leucine rich repeat containing 36##BC018031|LRRC36|55282|leucine rich repeat containing 36##BC070103|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC094790|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK302748|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK302567|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC117335|KCTD19|146212|potassium channel tetramerisation domain containing 19##NM_001100915|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK097481|KCTD19|146212|potassium channel tetramerisation domain containing 19##AF132972|TPPP3|51673|tubulin polymerization-promoting protein family member 3##AF078846|TPPP3|51673|tubulin polymerization-promoting protein family member 3##BC000691|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_015964|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_016140|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_013304|ZDHHC1|29800|zinc finger, DHHC-type containing 1##U90653|ZDHHC1|29800|zinc finger, DHHC-type containing 1##BC021908|ZDHHC1|29800|zinc finger, DHHC-type containing 1##U26726|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC036780|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC064536|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_000196|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##U14631|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2	0.994146	0.014282	denovo_WM_7:-32:0.747
chr17	36907951	36908100	reg1002429.p1	7.850	+	TSC_hg19_v1_chr17_-_36906030 BX647429	-1976	-	TSC_hg19_v1_chr17_-_36904564 BC024255 NM_007144	-3458	-	TSC_hg19_v1_chr17_+_36886574 NM_001136498 AK097047 BC062294	-21393	+	TSC_hg19_v1_chr17_+_36909011 NM_002795 BC013008 BC002570 D26598	1005	+	BT019614 AB529089 CU693266 TSC_hg19_v1_chr17_-_36955807 BC027459	47763	-	TSC_hg19_v1_chr17_-_36956177 NM_003559 U85245	48157	-	BX647429|PCGF2|7703|polycomb group ring finger 2##BC024255|PCGF2|7703|polycomb group ring finger 2##NM_007144|PCGF2|7703|polycomb group ring finger 2##NM_001136498|CISD3|284106|CDGSH iron sulfur domain 3##AK097047|CISD3|284106|CDGSH iron sulfur domain 3##BC062294|CISD3|284106|CDGSH iron sulfur domain 3##NM_002795|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##BC013008|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##D26598|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##BT019614|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta##BC027459|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta##NM_003559|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta##U85245|PIP4K2B|8396|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	1.16906	0.0	denovo_WM_7:-6:0.238	denovo_WM_7:-7:0.238	denovo_WM_7:-8:0.238	denovo_WM_7:-9:0.238
chr1	16163356	16163536	reg1004375.p3	7.849	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-1090	-	BC012991 TSC_hg19_v1_chr1_-_16161389	-2112	-	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-29254	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	10933	+	TSC_hg19_v1_chr1_+_16259065 BC172907	95665	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	139024	-	AK094772|FLJ37453|729614|uncharacterized LOC729614##NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17	0.999693	0.0	denovo_WM_7:-31:0.457	denovo_WM_7:-32:0.457
chr5	130611726	130611871	reg1002071.p1	7.847	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-11998	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-12030	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-12042	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	358959	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	359021	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	359080	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.999569	0.0	denovo_WM_7:2:0.228	denovo_WM_7:3:0.744
chr16	25193541	25193684	reg1003675.p1	7.845	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	-70415	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	-70551	+	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	-115323	+	AB013456 AF067797 NM_001169 AK222975 AK222964	34688	+	BX648785 AK131342 NM_001012981 AK302399	75247	-	TSC_hg19_v1_chr16_-_25269141 AK303472	75593	-	AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##AB013456|AQP8|343|aquaporin 8##AF067797|AQP8|343|aquaporin 8##NM_001169|AQP8|343|aquaporin 8##AK222975|AQP8|343|aquaporin 8##AK222964|AQP8|343|aquaporin 8##BX648785|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK131342|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##NM_001012981|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK302399|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK303472|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2	0.995666	0.0	denovo_WM_7:-73:0.456	denovo_WM_7:-74:0.456
chr16	57219835	57219968	reg1003430.p2	7.843	+	TSC_hg19_v1_chr16_+_57126530 AK315394	-93328	+	TSC_hg19_v1_chr16_+_57126513 AF492484 BC053658	-93393	+	TSC_hg19_v1_chr16_+_57126462 NM_152727	-93436	+	AK023291 TSC_hg19_v1_chr16_-_57219949 AF212249 AF271785 BC020536	11	-	AK025452 TSC_hg19_v1_chr16_-_57219950	49	-	TSC_hg19_v1_chr16_-_57219952 NM_024946	62	-	AK315394|CPNE2|221184|copine II##AF492484|CPNE2|221184|copine II##BC053658|CPNE2|221184|copine II##NM_152727|CPNE2|221184|copine II##AK023291|FAM192A|80011|family with sequence similarity 192, member A##AF212249|FAM192A|80011|family with sequence similarity 192, member A##AF271785|FAM192A|80011|family with sequence similarity 192, member A##BC020536|FAM192A|80011|family with sequence similarity 192, member A##AK025452|FAM192A|80011|family with sequence similarity 192, member A##NM_024946|FAM192A|80011|family with sequence similarity 192, member A	2.047667	0.0	denovo_WM_7:-17:0.727	denovo_WM_7:-80:0.363	denovo_WM_7:-81:0.363
chr16	11736427	11736560	reg1005497.p1	7.842	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-55704	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-56306	-	TSC_hg19_v1_chr16_+_11439315 BC013040	-297175	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	25805	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	100163	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	154558	-	BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A	1.094461	0.019265	
chr6	143826358	143826514	reg1003888.p1	7.842	+	TSC_hg19_v1_chr6_+_143771941 NM_003630 BC014551 BC015506 AB035307 AK025644 AK300907 AJ001625 AJ131389 AY277600 CR542062 CU677325	-54436	+	TSC_hg19_v1_chr6_-_143771811 BC037955 NM_182503	-54607	-	TSC_hg19_v1_chr6_+_143382055 BC025278 CU692954 DQ893291 DQ896622 BX538067	-444354	+	CU678350 AK296485 BC003060 AK075458 TSC_hg19_v1_chr6_-_143832841 AY358551 BC051268 AK315475 NM_032020	6458	-	NM_001100166 NM_014721 AK300221 AB014580 BC152416 BC150630	102926	+	TSC_hg19_v1_chr6_+_143999112 AK298263 NM_001100164 NM_001100165 CR749345 AK297799	172741	+	NM_003630|PEX3|8504|peroxisomal biogenesis factor 3##BC014551|PEX3|8504|peroxisomal biogenesis factor 3##BC015506|PEX3|8504|peroxisomal biogenesis factor 3##AB035307|PEX3|8504|peroxisomal biogenesis factor 3##AK025644|PEX3|8504|peroxisomal biogenesis factor 3##AK300907|PEX3|8504|peroxisomal biogenesis factor 3##AJ001625|PEX3|8504|peroxisomal biogenesis factor 3##AJ131389|PEX3|8504|peroxisomal biogenesis factor 3##AY277600|PEX3|8504|peroxisomal biogenesis factor 3##CR542062|PEX3|8504|peroxisomal biogenesis factor 3##BC037955|ADAT2|134637|adenosine deaminase, tRNA-specific 2##NM_182503|ADAT2|134637|adenosine deaminase, tRNA-specific 2##BC025278|AIG1|51390|androgen-induced 1##DQ893291|AIG1|51390|androgen-induced 1##DQ896622|AIG1|51390|androgen-induced 1##BX538067|AIG1|51390|androgen-induced 1##AK296485|FUCA2|2519|fucosidase, alpha-L- 2, plasma##BC003060|FUCA2|2519|fucosidase, alpha-L- 2, plasma##AK075458|FUCA2|2519|fucosidase, alpha-L- 2, plasma##AY358551|FUCA2|2519|fucosidase, alpha-L- 2, plasma##BC051268|FUCA2|2519|fucosidase, alpha-L- 2, plasma##AK315475|FUCA2|2519|fucosidase, alpha-L- 2, plasma##NM_032020|FUCA2|2519|fucosidase, alpha-L- 2, plasma##NM_001100166|PHACTR2|9749|phosphatase and actin regulator 2##NM_014721|PHACTR2|9749|phosphatase and actin regulator 2##AK300221|PHACTR2|9749|phosphatase and actin regulator 2##AB014580|PHACTR2|9749|phosphatase and actin regulator 2##BC152416|PHACTR2|9749|phosphatase and actin regulator 2##BC150630|PHACTR2|9749|phosphatase and actin regulator 2##AK298263|PHACTR2|9749|phosphatase and actin regulator 2##NM_001100164|PHACTR2|9749|phosphatase and actin regulator 2##NM_001100165|PHACTR2|9749|phosphatase and actin regulator 2##CR749345|PHACTR2|9749|phosphatase and actin regulator 2##AK297799|PHACTR2|9749|phosphatase and actin regulator 2	1.054629	0.0	
chr3	127400896	127401031	reg1004184.p2	7.840	+	TSC_hg19_v1_chr3_+_127391798 NM_032548 NM_172027 BC011858 AK098738 AK130594 AB053324 AB053325 AB053326 AK315148 AF297986 CU680084	-9146	+	TSC_hg19_v1_chr3_+_127348020 BC019330 AY359096 NM_015720 BC052585 AF219137	-52931	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	-83679	+	CR456835 TSC_hg19_v1_chr3_-_127541359 AK304844 BC000551 U67963 AK315529 BC006230 NM_007283	140467	-	TSC_hg19_v1_chr3_-_127542029 AK091314 AK310874 NM_001003794	141179	-	AK307108 BX537865 TSC_hg19_v1_chr3_+_127634319	233355	+	NM_032548|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##NM_172027|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC011858|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK098738|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK130594|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053324|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053325|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053326|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK315148|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AF297986|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC019330|PODXL2|50512|podocalyxin-like 2##AY359096|PODXL2|50512|podocalyxin-like 2##NM_015720|PODXL2|50512|podocalyxin-like 2##BC052585|PODXL2|50512|podocalyxin-like 2##AF219137|PODXL2|50512|podocalyxin-like 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2##CR456835|MGLL|11343|monoglyceride lipase##AK304844|MGLL|11343|monoglyceride lipase##BC000551|MGLL|11343|monoglyceride lipase##U67963|MGLL|11343|monoglyceride lipase##AK315529|MGLL|11343|monoglyceride lipase##BC006230|MGLL|11343|monoglyceride lipase##NM_007283|MGLL|11343|monoglyceride lipase##AK091314|MGLL|11343|monoglyceride lipase##AK310874|MGLL|11343|monoglyceride lipase##NM_001003794|MGLL|11343|monoglyceride lipase##AK307108|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12##BX537865|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	0.986852	0.0	denovo_WM_7:-13:0.296	denovo_WM_7:-14:0.296	denovo_WM_7:-15:0.296
chr10	112009314	112009444	reg1004371.p1	7.839	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-23558	+	BC012907 NM_001008541	-39391	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-42020	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	55214	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	55321	-	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	248372	+	AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5	0.995376	0.0	denovo_WM_7:-36:0.815
chr12	113661174	113661310	reg1003474.p2	7.839	+	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	-1939	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	-1962	+	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	-1999	+	BC098174 BC098360 TSC_hg19_v1_chr12_-_113772887	111619	-	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	111683	-	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	135129	+	BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##BC098360|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2	0.999209	0.0	denovo_WM_7:6:0.310	denovo_WM_7:7:0.310	denovo_WM_7:8:0.310
chr4	116213571	116213734	reg1003958.p1	7.839	+	BC113075 BC012326 AK289670 AB036429 NM_022569	-178671	-	NM_003360 U30930	-670130	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-694069	+	AK074617 BC030831 NM_152402	1793081	-	TSC_hg19_v1_chr4_+_118954764 AY358852	2741119	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	2741923	+	BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	0.995132	0.0	
chr10	121465205	121465385	reg1000582.p4	7.838	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-54159	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-54220	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-54242	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	20243	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	20319	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	20410	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.995651	0.0	
chr10	61645373	61645497	reg1003446.p1	7.838	+	AK126643 TSC_hg19_v1_chr10_-_61469461 NM_194298	-175711	-	AK299924 NM_001143773	-522775	-	CU687880 DQ894404 EU176262 AK294805 AK289796 TSC_hg19_v1_chr10_-_61122308 BC036453 AK316542 BC064431 NM_001001971 NM_001166698 NM_198215	-523150	-	AB590767 TSC_hg19_v1_chr10_-_61666205 S72869	20766	-	D90075 BC064391 TSC_hg19_v1_chr10_-_61666249 BC036757 BC022284 AK292593 NM_005436	20889	-	AK292927 AK092527 NM_001149	255281	-	AK126643|LOC100129721|100129721|uncharacterized LOC100129721##NM_194298|SLC16A9|220963|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)##AK299924|FAM13C|220965|family with sequence similarity 13, member C##NM_001143773|FAM13C|220965|family with sequence similarity 13, member C##DQ894404|FAM13C|220965|family with sequence similarity 13, member C##EU176262|FAM13C|220965|family with sequence similarity 13, member C##AK294805|FAM13C|220965|family with sequence similarity 13, member C##AK289796|FAM13C|220965|family with sequence similarity 13, member C##BC036453|FAM13C|220965|family with sequence similarity 13, member C##AK316542|FAM13C|220965|family with sequence similarity 13, member C##BC064431|FAM13C|220965|family with sequence similarity 13, member C##NM_001001971|FAM13C|220965|family with sequence similarity 13, member C##NM_001166698|FAM13C|220965|family with sequence similarity 13, member C##NM_198215|FAM13C|220965|family with sequence similarity 13, member C##S72869|CCDC6|8030|coiled-coil domain containing 6##BC064391|CCDC6|8030|coiled-coil domain containing 6##BC036757|CCDC6|8030|coiled-coil domain containing 6##BC022284|CCDC6|8030|coiled-coil domain containing 6##AK292593|CCDC6|8030|coiled-coil domain containing 6##NM_005436|CCDC6|8030|coiled-coil domain containing 6##AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	0.0	0.0	
chr2	225794950	225795113	reg1004510.p1	7.838	+	TSC_hg19_v1_chr2_-_225450116 NM_003590	-344911	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-344956	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	-344990	-	TSC_hg19_v1_chr2_-_225811768 EU236710	16723	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	112317	-	NM_020864 BC131727 AB040919	470614	+	NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##EU236710|DOCK10|55619|dedicator of cytokinesis 10##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	1.410932	0.0	denovo_WM_7:-73:0.310
chr15	70393943	70394100	reg1003983.p1	7.837	+	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	-3778	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	-3794	-	BC015421 TSC_hg19_v1_chr15_-_70341948	-52112	-	TSC_hg19_v1_chr15_-_70878946 BC040579	484923	-	BC016881 AL834243 NM_001008224 AK055435	600606	-	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	661821	-	BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats	0.999859	0.0	
chr9	140044799	140044979	reg1002633.p1	7.836	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	-11111	+	TSC_hg19_v1_chr9_+_140032795 L13266	-12082	+	TSC_hg19_v1_chr9_-_140024189 BC018639	-20654	-	TSC_hg19_v1_chr9_-_140063880 EU588721	18993	-	DQ355157 BC140911 TSC_hg19_v1_chr9_-_140064504 NM_001013653	19576	-	AF191337 DQ890852 DQ894007 BC032503 AK296204 TSC_hg19_v1_chr9_-_140083009	38107	-	NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##DQ355157|LRRC26|389816|leucine rich repeat containing 26##BC140911|LRRC26|389816|leucine rich repeat containing 26##NM_001013653|LRRC26|389816|leucine rich repeat containing 26##AF191337|ANAPC2|29882|anaphase promoting complex subunit 2##DQ890852|ANAPC2|29882|anaphase promoting complex subunit 2##DQ894007|ANAPC2|29882|anaphase promoting complex subunit 2##BC032503|ANAPC2|29882|anaphase promoting complex subunit 2##AK296204|ANAPC2|29882|anaphase promoting complex subunit 2	0.0	0.0	
chrX	24099820	24099996	reg1002498.p1	7.836	+	TSC_hg19_v1_chrX_+_24073072 AK222577 AK290397 AK312247 AB590041 CU676476 DQ891794 DQ894977 AB451230 AB451353 L19161	-26830	+	TSC_hg19_v1_chrX_+_24073062 BC019906 NM_001415	-26844	+	AK057298 NM_030624	-54606	-	AB209892 NM_001178086 NM_001178095 X59738 TSC_hg19_v1_chrX_+_24167845 NM_001178084 NM_001178085 NM_003410	67884	+	X59739 X59740 TSC_hg19_v1_chrX_+_24167864	67964	+	NM_001136233	231523	-	AK222577|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK290397|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK312247|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ891794|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ894977|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451230|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451353|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##L19161|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##BC019906|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##NM_001415|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK057298|KLHL15|80311|kelch-like 15 (Drosophila)##NM_030624|KLHL15|80311|kelch-like 15 (Drosophila)##AB209892|ZFX|7543|zinc finger protein, X-linked##NM_001178086|ZFX|7543|zinc finger protein, X-linked##NM_001178095|ZFX|7543|zinc finger protein, X-linked##X59738|ZFX|7543|zinc finger protein, X-linked##NM_001178084|ZFX|7543|zinc finger protein, X-linked##NM_001178085|ZFX|7543|zinc finger protein, X-linked##NM_003410|ZFX|7543|zinc finger protein, X-linked##X59739|ZFX|7543|zinc finger protein, X-linked##X59740|ZFX|7543|zinc finger protein, X-linked##NM_001136233|FAM48B2|170067|family with sequence similarity 48, member B2	0.993766	0.0	
chr16	11782863	11783033	reg1003155.p1	7.835	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-20650	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-102159	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-102761	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	53708	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	108103	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	108167	-	NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A	0.99951	0.0	denovo_WM_7:3:0.425	denovo_WM_7:4:0.425
chr11	95523141	95523277	reg1004598.p1	7.833	+	AK021591 TSC_hg19_v1_chr11_-_95522975 BC026013 NM_144664	-243	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	-476	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	-558	-	TSC_hg19_v1_chr11_+_95523702 NM_001243776 NM_001243777 NM_014679 BC001233 AK291245 AK293277 AK098647 BC031048 AY239292	466	+	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	631	+	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	133842	-	AK021591|FAM76B|143684|family with sequence similarity 76, member B##BC026013|FAM76B|143684|family with sequence similarity 76, member B##NM_144664|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##NM_001243776|CEP57|9702|centrosomal protein 57kDa##NM_001243777|CEP57|9702|centrosomal protein 57kDa##NM_014679|CEP57|9702|centrosomal protein 57kDa##BC001233|CEP57|9702|centrosomal protein 57kDa##AK291245|CEP57|9702|centrosomal protein 57kDa##AK293277|CEP57|9702|centrosomal protein 57kDa##AK098647|CEP57|9702|centrosomal protein 57kDa##BC031048|CEP57|9702|centrosomal protein 57kDa##AY239292|CEP57|9702|centrosomal protein 57kDa##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2	0.0	0.0	
chr18	29665652	29665773	reg1004411.p2	7.833	+	TSC_hg19_v1_chr18_+_29598794 BC012021 CU680164	-66906	+	AK000463 AK225518 NM_017831	-67268	+	TSC_hg19_v1_chr18_-_29523092 NM_014939 AL136749	-142604	-	NM_016271 TSC_hg19_v1_chr18_+_29671843	6124	+	TSC_hg19_v1_chr18_+_29671959 AK315761 AF162680 BC018107	6338	+	NM_001191324 NM_198128 TSC_hg19_v1_chr18_+_29672650 AK023579 AB528421 DQ890744 DQ893914 CU676180 BT006878 CR457150	6941	+	BC012021|RNF125|54941|ring finger protein 125##AK000463|RNF125|54941|ring finger protein 125##AK225518|RNF125|54941|ring finger protein 125##NM_017831|RNF125|54941|ring finger protein 125##NM_014939|TRAPPC8|22878|trafficking protein particle complex 8##AL136749|TRAPPC8|22878|trafficking protein particle complex 8##NM_016271|RNF138|51444|ring finger protein 138##AK315761|RNF138|51444|ring finger protein 138##AF162680|RNF138|51444|ring finger protein 138##BC018107|RNF138|51444|ring finger protein 138##NM_001191324|RNF138|51444|ring finger protein 138##NM_198128|RNF138|51444|ring finger protein 138##AK023579|RNF138|51444|ring finger protein 138##DQ890744|RNF138|51444|ring finger protein 138##DQ893914|RNF138|51444|ring finger protein 138##BT006878|RNF138|51444|ring finger protein 138##CR457150|RNF138|51444|ring finger protein 138	0.995061	0.0	
chr2	86221101	86221224	reg1001566.p1	7.833	+	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	-105076	-	AY152815 NM_001042437	-126370	-	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-240157	+	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	111821	-	NM_015425	112115	-	NM_017952 TSC_hg19_v1_chr2_+_86333357 AK293962 BC011832 AB528740	112179	+	AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##NM_015425|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##NM_017952|PTCD3|55037|Pentatricopeptide repeat domain 3##AK293962|PTCD3|55037|Pentatricopeptide repeat domain 3##BC011832|PTCD3|55037|Pentatricopeptide repeat domain 3	0.877415	0.0	denovo_WM_7:-26:0.842
chr8	118398781	118398888	reg1001686.p1	7.833	+	NM_001172814 NM_173851	-251498	+	AK298294 NM_001172813 NM_001172815 AL713790	-435631	+	EF560713 NM_001172811	-436323	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	134124	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	134208	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	725127	-	NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK298294|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172813|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172815|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AL713790|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##EF560713|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172811|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_080651|MED30|90390|mediator complex subunit 30##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1	0.0	0.0	
chr16	67835919	67836068	reg1003801.p1	7.831	+	TSC_hg19_v1_chr16_-_67753220 AK074382 BC107585 BC000757 AK307280 AK225997 NM_001243650 NM_030819	-82764	-	TSC_hg19_v1_chr16_+_67700716 NM_001012984 AK123796 BC032064 BC041612 BC064498 BC082249	-135272	+	TSC_hg19_v1_chr16_-_67700634 BC008284 AL136786 NM_032140	-135378	-	TSC_hg19_v1_chr16_-_67840456 AB384605 AB040897 AK055727 AK298806 AK304030 BC099917 AK295171 AK295530	4411	-	TSC_hg19_v1_chr16_-_67840464 BC121176 BC121177 AY337313 NM_020850	4516	-	AF132730 AK303841 BC050693 AK302300 AK301920 NM_018430 BC111018 BC035320 AK027245	5026	+	AK074382|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC107585|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC000757|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK307280|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK225997|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_001243650|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_030819|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_001012984|C16orf86|388284|chromosome 16 open reading frame 86##AK123796|C16orf86|388284|chromosome 16 open reading frame 86##BC032064|C16orf86|388284|chromosome 16 open reading frame 86##BC041612|C16orf86|388284|chromosome 16 open reading frame 86##BC064498|C16orf86|388284|chromosome 16 open reading frame 86##BC082249|C16orf86|388284|chromosome 16 open reading frame 86##BC008284|C16orf48|84080|chromosome 16 open reading frame 48##AL136786|C16orf48|84080|chromosome 16 open reading frame 48##NM_032140|C16orf48|84080|chromosome 16 open reading frame 48##AB040897|RANBP10|57610|RAN binding protein 10##AK055727|RANBP10|57610|RAN binding protein 10##AK298806|RANBP10|57610|RAN binding protein 10##AK304030|RANBP10|57610|RAN binding protein 10##BC099917|RANBP10|57610|RAN binding protein 10##AK295171|RANBP10|57610|RAN binding protein 10##AK295530|RANBP10|57610|RAN binding protein 10##BC121176|RANBP10|57610|RAN binding protein 10##BC121177|RANBP10|57610|RAN binding protein 10##AY337313|RANBP10|57610|RAN binding protein 10##NM_020850|RANBP10|57610|RAN binding protein 10##AF132730|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK303841|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC050693|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK302300|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK301920|TSNAXIP1|55815|translin-associated factor X interacting protein 1##NM_018430|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC111018|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC035320|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK027245|TSNAXIP1|55815|translin-associated factor X interacting protein 1	0.991749	0.0	denovo_WM_7:11:0.331	denovo_WM_7:12:0.331	denovo_WM_7:13:0.331
chr3	27764304	27764467	reg1002546.p1	7.831	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-184	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-592	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-238455	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	518713	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	625997	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	626176	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	1.986199	0.0	denovo_WM_7:-4:0.610	denovo_WM_7:-5:0.332	denovo_WM_7:-19:0.279	denovo_WM_7:-20:0.557
chr6	14089628	14089755	reg1003522.p1	7.831	+	NM_001165033 AK090576 AX746519	-164248	+	NM_001165032 NM_152737 TSC_hg19_v1_chr6_+_13925202 AK315528 BC030666 BC050030	-164525	+	NM_001165034	-165015	+	NM_001251901	27795	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	28214	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	28331	+	NM_001165033|RNF182|221687|ring finger protein 182##AK090576|RNF182|221687|ring finger protein 182##NM_001165032|RNF182|221687|ring finger protein 182##NM_152737|RNF182|221687|ring finger protein 182##AK315528|RNF182|221687|ring finger protein 182##BC030666|RNF182|221687|ring finger protein 182##BC050030|RNF182|221687|ring finger protein 182##NM_001165034|RNF182|221687|ring finger protein 182##NM_001251901|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule	0.993792	0.0	denovo_WM_7:46:0.248	denovo_WM_7:47:0.248	denovo_WM_7:48:0.248	denovo_WM_7:49:0.248
chr17	30263602	30263782	reg1004235.p1	7.830	+	TSC_hg19_v1_chr17_-_30228769 AK299806	-34928	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	-34961	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	-35026	-	TSC_hg19_v1_chr17_+_30264046 NM_015355	351	+	TSC_hg19_v1_chr17_+_30264057 AK290014	365	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	383	+	AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)	0.995253	0.0	denovo_WM_7:-92:0.982
chr22	24113232	24113347	reg1004330.p1	7.830	+	TSC_hg19_v1_chr22_-_24110129 BC053570 AK289560 BC065232 NM_213720	-3177	-	AK093880 AX748349 NM_182520	-8082	+	CU013206 CU013494 DQ893106 DQ896379 CR456610 AK312098 AF163825 AY359000 NM_013378 BC020666	-16687	-	AK075448 AK129792 NM_005940 X57766 BC057788	1756	+	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	15960	+	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	67896	-	BC053570|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK289560|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##BC065232|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##NM_213720|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK093880|C22orf15|150248|chromosome 22 open reading frame 15##NM_182520|C22orf15|150248|chromosome 22 open reading frame 15##CU013206|VPREB3|29802|pre-B lymphocyte 3##CU013494|VPREB3|29802|pre-B lymphocyte 3##DQ893106|VPREB3|29802|pre-B lymphocyte 3##DQ896379|VPREB3|29802|pre-B lymphocyte 3##CR456610|VPREB3|29802|pre-B lymphocyte 3##AK312098|VPREB3|29802|pre-B lymphocyte 3##AF163825|VPREB3|29802|pre-B lymphocyte 3##AY359000|VPREB3|29802|pre-B lymphocyte 3##NM_013378|VPREB3|29802|pre-B lymphocyte 3##BC020666|VPREB3|29802|pre-B lymphocyte 3##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3	0.984524	0.0	
chr14	55324767	55324905	reg1005106.p1	7.827	+	NM_001161577 BC021726	-103309	+	TSC_hg19_v1_chr14_+_55168831 AB028976	-155947	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	-290200	+	AY137463 AY137464 AY137465 Z16418 S44049 CR536551 DQ892998 DQ896245 S43856 S44053 TSC_hg19_v1_chr14_-_55369545 Z29433 Z29434 U66095 BC025415 U19523 U66097 NM_000161 NM_001024024 NM_001024070 NM_001024071	44578	-	TSC_hg19_v1_chr14_-_55493780 BC000622 BC005040 AK293005 BC063041	168949	-	TSC_hg19_v1_chr14_-_55493818 BC043349 NM_001008396 NM_007086	168975	-	NM_001161577|SAMD4A|23034|sterile alpha motif domain containing 4A##BC021726|SAMD4A|23034|sterile alpha motif domain containing 4A##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##AY137463|GCH1|2643|GTP cyclohydrolase 1##AY137464|GCH1|2643|GTP cyclohydrolase 1##AY137465|GCH1|2643|GTP cyclohydrolase 1##Z16418|GCH1|2643|GTP cyclohydrolase 1##S44049|GCH1|2643|GTP cyclohydrolase 1##CR536551|GCH1|2643|GTP cyclohydrolase 1##DQ892998|GCH1|2643|GTP cyclohydrolase 1##DQ896245|GCH1|2643|GTP cyclohydrolase 1##S43856|GCH1|2643|GTP cyclohydrolase 1##S44053|GCH1|2643|GTP cyclohydrolase 1##Z29433|GCH1|2643|GTP cyclohydrolase 1##Z29434|GCH1|2643|GTP cyclohydrolase 1##U66095|GCH1|2643|GTP cyclohydrolase 1##BC025415|GCH1|2643|GTP cyclohydrolase 1##U19523|GCH1|2643|GTP cyclohydrolase 1##U66097|GCH1|2643|GTP cyclohydrolase 1##NM_000161|GCH1|2643|GTP cyclohydrolase 1##NM_001024024|GCH1|2643|GTP cyclohydrolase 1##NM_001024070|GCH1|2643|GTP cyclohydrolase 1##NM_001024071|GCH1|2643|GTP cyclohydrolase 1##BC000622|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC005040|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##AK293005|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC063041|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC043349|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_001008396|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_007086|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1	0.0	0.0	
chr17	36003547	36003718	reg1003904.p1	7.826	+	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	-155	-	TSC_hg19_v1_chr17_-_36003446 BC006489 AB208938 CU692030	-191	-	TSC_hg19_v1_chr17_-_35969418 AB462949 BC117313 BC143452 BC143476 BC143478 BC084536 BC090930 AF169548 AK302821 NM_001163544 NM_001163545 NM_001163546 NM_001163547 NM_007247 NM_080550 NM_198882	-34182	-	AB528419 BT007126 CR536572 DQ891528 EU176615 TSC_hg19_v1_chr17_-_36104898	101254	-	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	101419	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	280361	+	AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC006489|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AB208938|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC117313|SYNRG|11276|synergin, gamma##BC143452|SYNRG|11276|synergin, gamma##BC143476|SYNRG|11276|synergin, gamma##BC143478|SYNRG|11276|synergin, gamma##BC084536|SYNRG|11276|synergin, gamma##BC090930|SYNRG|11276|synergin, gamma##AF169548|SYNRG|11276|synergin, gamma##AK302821|SYNRG|11276|synergin, gamma##NM_001163544|SYNRG|11276|synergin, gamma##NM_001163545|SYNRG|11276|synergin, gamma##NM_001163546|SYNRG|11276|synergin, gamma##NM_001163547|SYNRG|11276|synergin, gamma##NM_007247|SYNRG|11276|synergin, gamma##NM_080550|SYNRG|11276|synergin, gamma##NM_198882|SYNRG|11276|synergin, gamma##BT007126|HNF1B|6928|HNF1 homeobox B##CR536572|HNF1B|6928|HNF1 homeobox B##DQ891528|HNF1B|6928|HNF1 homeobox B##EU176615|HNF1B|6928|HNF1 homeobox B##HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3	0.99864	0.0	denovo_WM_7:-9:0.449	denovo_WM_7:-10:0.449
chr10	45957944	45958054	reg1002825.p1	7.824	+	TSC_hg19_v1_chr10_+_45869700 BC034464 BC040450 J03600 J03571 AB590536 HQ258335 HM592258 HM592259 HM592260 HM592261	-88302	+	TSC_hg19_v1_chr10_+_45869638 AB208946 NM_000698 AK225603 BC130332 BC132677 BC143985 BC143986 AK315223	-88362	+	AK131555 NM_001004297	-146944	-	AK313340 BC025394 NM_001002266 AK307667	72820	-	TSC_hg19_v1_chr10_-_46090318 BC066988 NM_001002265 NM_145021	132295	-	TSC_hg19_v1_chr10_-_46168221 AK090704 AX746581 BC017591 AK292420 AK292469 AK314395 AK097924 NM_001128324 NM_174890 BC045587	210215	-	BC034464|ALOX5|240|arachidonate 5-lipoxygenase##BC040450|ALOX5|240|arachidonate 5-lipoxygenase##J03600|ALOX5|240|arachidonate 5-lipoxygenase##J03571|ALOX5|240|arachidonate 5-lipoxygenase##HQ258335|ALOX5|240|arachidonate 5-lipoxygenase##HM592258|ALOX5|240|arachidonate 5-lipoxygenase##HM592259|ALOX5|240|arachidonate 5-lipoxygenase##HM592260|ALOX5|240|arachidonate 5-lipoxygenase##HM592261|ALOX5|240|arachidonate 5-lipoxygenase##AB208946|ALOX5|240|arachidonate 5-lipoxygenase##NM_000698|ALOX5|240|arachidonate 5-lipoxygenase##AK225603|ALOX5|240|arachidonate 5-lipoxygenase##BC130332|ALOX5|240|arachidonate 5-lipoxygenase##BC132677|ALOX5|240|arachidonate 5-lipoxygenase##BC143985|ALOX5|240|arachidonate 5-lipoxygenase##BC143986|ALOX5|240|arachidonate 5-lipoxygenase##AK315223|ALOX5|240|arachidonate 5-lipoxygenase##AK131555|OR13A1|79290|olfactory receptor, family 13, subfamily A, member 1##NM_001004297|OR13A1|79290|olfactory receptor, family 13, subfamily A, member 1##AK313340|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##BC025394|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002266|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##AK307667|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##BC066988|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002265|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_145021|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##AK090704|ZFAND4|93550|zinc finger, AN1-type domain 4##BC017591|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292420|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292469|ZFAND4|93550|zinc finger, AN1-type domain 4##AK314395|ZFAND4|93550|zinc finger, AN1-type domain 4##AK097924|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_001128324|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_174890|ZFAND4|93550|zinc finger, AN1-type domain 4##BC045587|ZFAND4|93550|zinc finger, AN1-type domain 4	1.955112	0.0	denovo_WM_7:69:0.710	denovo_WM_7:70:0.226	denovo_WM_7:85:0.308	denovo_WM_7:86:0.620
chr16	28565221	28565397	reg1004080.p1	7.824	+	TSC_hg19_v1_chr16_+_28565292 AK057008	-20	+	TSC_hg19_v1_chr16_+_28565245 NM_138414 BC011981	-69	+	TSC_hg19_v1_chr16_-_28550361 AF069073 NM_001042483 NM_012385	-14900	-	BC052280 NM_177528	42438	-	BC025763 U28170 BC113727 BC113729 U28169 NM_001054	43069	-	NM_177530 NM_177534	55339	-	AK057008|CCDC101|112869|coiled-coil domain containing 101##NM_138414|CCDC101|112869|coiled-coil domain containing 101##BC011981|CCDC101|112869|coiled-coil domain containing 101##AF069073|NUPR1|26471|nuclear protein, transcriptional regulator, 1##NM_001042483|NUPR1|26471|nuclear protein, transcriptional regulator, 1##NM_012385|NUPR1|26471|nuclear protein, transcriptional regulator, 1##BC052280|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##NM_177528|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##BC025763|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##U28170|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##BC113727|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##BC113729|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##U28169|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##NM_001054|SULT1A2|6799|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2##NM_177530|SULT1A1|6817|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1##NM_177534|SULT1A1|6817|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1	0.388873	0.0	denovo_WM_7:-37:0.360
chr1	22088700	22088816	reg1003892.p3	7.822	+	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	-92925	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	-110411	-	AB003930 TSC_hg19_v1_chr1_-_21949064	-139721	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	20767	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	20876	-	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	20941	-	AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48	0.980737	0.0	denovo_WM_7:13:0.818
chr2	3399999	3400107	reg1004240.p1	7.822	+	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	-16548	+	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	-18497	-	TSC_hg19_v1_chr2_-_2335085 AK307797	-1064969	-	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	123245	-	TSC_hg19_v1_chr2_-_3523345 NM_018269	123298	-	AJ224117 BT019670 CR541820 DQ892597 DQ895824 TSC_hg19_v1_chr2_-_3605880 AF048994 AK096913 AF048995 AK075490	205826	-	AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK307797|MYT1L|23040|myelin transcription factor 1-like##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1##NM_018269|ADI1|55256|acireductone dioxygenase 1##AJ224117|RNASEH1|246243|ribonuclease H1##BT019670|RNASEH1|246243|ribonuclease H1##CR541820|RNASEH1|246243|ribonuclease H1##DQ892597|RNASEH1|246243|ribonuclease H1##DQ895824|RNASEH1|246243|ribonuclease H1##AF048994|RNASEH1|246243|ribonuclease H1##AK096913|RNASEH1|246243|ribonuclease H1##AF048995|RNASEH1|246243|ribonuclease H1##AK075490|RNASEH1|246243|ribonuclease H1	0.988032	0.0	denovo_WM_7:-33:0.603
chr7	100293113	100293276	reg1002956.p1	7.822	+	NM_022574	-6325	-	TSC_hg19_v1_chr7_+_100273776 M36429 AB528576 CU679597 AF501883 CR541729	-19362	+	M16538 TSC_hg19_v1_chr7_+_100271486 AK291592	-21700	+	TSC_hg19_v1_chr7_+_100303755 NM_005837 BC001430 U94316	10526	+	NM_000799 X02157 BC093628 BC111937 BC143225 AB463610 JN849371	25318	+	AF332975 AF332976 AF332977 AF332978 AF332979 AF332980 NM_003386 NM_173059	38054	+	NM_022574|GIGYF1|64599|GRB10 interacting GYF protein 1##M36429|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##AF501883|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##CR541729|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##M16538|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##AK291592|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##NM_005837|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##BC001430|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##U94316|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##NM_000799|EPO|2056|erythropoietin##X02157|EPO|2056|erythropoietin##BC093628|EPO|2056|erythropoietin##BC111937|EPO|2056|erythropoietin##BC143225|EPO|2056|erythropoietin##JN849371|EPO|2056|erythropoietin##AF332975|ZAN|7455|zonadhesin##AF332976|ZAN|7455|zonadhesin##AF332977|ZAN|7455|zonadhesin##AF332978|ZAN|7455|zonadhesin##AF332979|ZAN|7455|zonadhesin##AF332980|ZAN|7455|zonadhesin##NM_003386|ZAN|7455|zonadhesin##NM_173059|ZAN|7455|zonadhesin	1.803174	0.0	denovo_WM_7:0:0.383	denovo_WM_7:0:0.422	denovo_WM_7:-14:0.371	denovo_WM_7:-15:0.451
chr10	96996091	96996241	reg1004182.p1	7.820	+	AK126134 NM_207321	-42210	+	M21942 M21941 DQ891400 DQ894579 M17397 M17398 AK303813 Y00498 AK292753 AK293327 AK293328 AK298401 AK315823 BC020596 NM_000770 NM_001198853 NM_001198854 NM_001198855	-167003	-	TSC_hg19_v1_chr10_+_96698414 AK289420 AK298458 BC020754 NM_000771 BC070317 M61855 M61857 BC125054 D00173 M21939 M15331 S46963	-297724	+	AJ310549 CU674454 EU446864 AB464004 TSC_hg19_v1_chr10_-_97050757 BC018755 AK314792 BC000915 NM_020992	54616	-	AM393082 NM_001034954 NM_001034955 NM_001034956 NM_001034957 NM_006434	204749	-	TSC_hg19_v1_chr10_-_97321129 AB037717 BC152463 AK022468 AK300407 AK304753 AL117472 AM260536 NM_015385 NM_024991	324973	-	AK126134|C10orf129|142827|chromosome 10 open reading frame 129##NM_207321|C10orf129|142827|chromosome 10 open reading frame 129##M21942|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M21941|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ891400|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ894579|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17397|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17398|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK303813|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##Y00498|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK292753|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293327|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293328|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK298401|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK315823|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##BC020596|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_000770|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198853|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198854|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198855|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK289420|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##AK298458|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##BC020754|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##NM_000771|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##BC070317|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M61855|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M61857|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##BC125054|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##D00173|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M21939|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##M15331|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##S46963|CYP2C9|1559|cytochrome P450, family 2, subfamily C, polypeptide 9##AJ310549|PDLIM1|9124|PDZ and LIM domain 1##EU446864|PDLIM1|9124|PDZ and LIM domain 1##BC018755|PDLIM1|9124|PDZ and LIM domain 1##AK314792|PDLIM1|9124|PDZ and LIM domain 1##BC000915|PDLIM1|9124|PDZ and LIM domain 1##NM_020992|PDLIM1|9124|PDZ and LIM domain 1##AM393082|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034954|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034955|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034956|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034957|SORBS1|10580|sorbin and SH3 domain containing 1##NM_006434|SORBS1|10580|sorbin and SH3 domain containing 1##AB037717|SORBS1|10580|sorbin and SH3 domain containing 1##BC152463|SORBS1|10580|sorbin and SH3 domain containing 1##AK022468|SORBS1|10580|sorbin and SH3 domain containing 1##AK300407|SORBS1|10580|sorbin and SH3 domain containing 1##AK304753|SORBS1|10580|sorbin and SH3 domain containing 1##AL117472|SORBS1|10580|sorbin and SH3 domain containing 1##AM260536|SORBS1|10580|sorbin and SH3 domain containing 1##NM_015385|SORBS1|10580|sorbin and SH3 domain containing 1##NM_024991|SORBS1|10580|sorbin and SH3 domain containing 1	0.987656	0.0	denovo_WM_7:-44:0.808
chr8	134931706	134931854	reg1004834.p1	7.820	+	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	-347683	-	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-622283	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-728450	+	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	777014	-	TSC_hg19_v1_chr8_-_135725053 AB463359	793299	-	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	793494	-	BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing	0.999569	0.0	
chr1	222905961	222906127	reg1001150.p1	7.815	+	TSC_hg19_v1_chr1_+_222886732 AK315930 AK293974	-19311	+	TSC_hg19_v1_chr1_+_222886714 AK304445	-19356	+	BC053552 TSC_hg19_v1_chr1_+_222886145 BC113635 BC113637 BC143811 BC105293	-19929	+	AK125494 NM_207468	4513	+	TSC_hg19_v1_chr1_+_222988422 NM_032890	82347	+	TSC_hg19_v1_chr1_-_223316591 NM_003268	410562	-	AK315930|BROX|148362|BRO1 domain and CAAX motif containing##AK293974|BROX|148362|BRO1 domain and CAAX motif containing##AK304445|BROX|148362|BRO1 domain and CAAX motif containing##BC113635|BROX|148362|BRO1 domain and CAAX motif containing##BC113637|BROX|148362|BRO1 domain and CAAX motif containing##BC143811|BROX|148362|BRO1 domain and CAAX motif containing##AK125494|FAM177B|400823|family with sequence similarity 177, member B##NM_207468|FAM177B|400823|family with sequence similarity 177, member B##NM_032890|DISP1|84976|dispatched homolog 1 (Drosophila)##NM_003268|TLR5|7100|toll-like receptor 5	0.0	0.0	
chr1	32986446	32986626	reg1000110.p2	7.815	+	TSC_hg19_v1_chr1_+_32930659 AK092326 AX747483 NM_001145720	-55884	+	CR457252 TSC_hg19_v1_chr1_-_32860030 BC010573 CR749228 BX641056 AK300231 BC026322 AK297604 AK300306 AK001138 AK225717 AK293454 BC028381 AK021440 AK297352 AK225026 AK304477 AK316172 NM_001143888 NM_001143889 NM_001143890 NM_018045	-126499	-	NM_001167676	-158693	-	NM_001040441	18235	+	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	18508	+	AY099494 TSC_hg19_v1_chr1_-_33116147 BC058843 AY158005 AY099493 AY151084 AY151085 NM_178547	129601	-	NM_001145720|ZBTB8B|728116|zinc finger and BTB domain containing 8B##CR457252|BSDC1|55108|BSD domain containing 1##BC010573|BSDC1|55108|BSD domain containing 1##CR749228|BSDC1|55108|BSD domain containing 1##BX641056|BSDC1|55108|BSD domain containing 1##AK300231|BSDC1|55108|BSD domain containing 1##BC026322|BSDC1|55108|BSD domain containing 1##AK297604|BSDC1|55108|BSD domain containing 1##AK300306|BSDC1|55108|BSD domain containing 1##AK001138|BSDC1|55108|BSD domain containing 1##AK225717|BSDC1|55108|BSD domain containing 1##AK293454|BSDC1|55108|BSD domain containing 1##BC028381|BSDC1|55108|BSD domain containing 1##AK021440|BSDC1|55108|BSD domain containing 1##AK297352|BSDC1|55108|BSD domain containing 1##AK225026|BSDC1|55108|BSD domain containing 1##AK304477|BSDC1|55108|BSD domain containing 1##AK316172|BSDC1|55108|BSD domain containing 1##NM_001143888|BSDC1|55108|BSD domain containing 1##NM_001143889|BSDC1|55108|BSD domain containing 1##NM_001143890|BSDC1|55108|BSD domain containing 1##NM_018045|BSDC1|55108|BSD domain containing 1##NM_001167676|LOC100128071|100128071|uncharacterized LOC100128071##NM_001040441|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY099494|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##BC058843|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY158005|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY099493|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151084|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151085|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_178547|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand	1.35577	0.0	denovo_WM_7:40:0.324	denovo_WM_7:41:0.324	denovo_WM_7:42:0.324	denovo_WM_7:-93:0.205
chr16	23867769	23867936	reg1003611.p1	7.815	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-20346	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-20457	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-20520	+	BC037899 NM_006539 AK095553	399022	+	AK055453 TSC_hg19_v1_chr16_+_24267474	399622	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	399846	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	0.990761	0.0	denovo_WM_7:2:0.491	denovo_WM_7:3:0.286	denovo_WM_7:4:0.214
chr7	23264125	23264231	reg1004094.p2	7.813	+	NM_007342 AK312991 U97198 TSC_hg19_v1_chr7_+_23221673 BC005327 AK300113 BC107583 BT007409 CU675113 AK298183	-42600	+	NM_018846	-118262	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	-118654	+	TSC_hg19_v1_chr7_+_23286300 AK304671 NM_001005340 NM_002510	22118	+	AK297051 TSC_hg19_v1_chr7_+_23286384 X76534	22206	+	AK297055 AK303071 AK312279 TSC_hg19_v1_chr7_+_23286386	22208	+	NM_007342|NUPL2|11097|nucleoporin like 2##AK312991|NUPL2|11097|nucleoporin like 2##U97198|NUPL2|11097|nucleoporin like 2##BC005327|NUPL2|11097|nucleoporin like 2##AK300113|NUPL2|11097|nucleoporin like 2##BC107583|NUPL2|11097|nucleoporin like 2##BT007409|NUPL2|11097|nucleoporin like 2##AK298183|NUPL2|11097|nucleoporin like 2##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##AK304671|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_001005340|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_002510|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297051|GPNMB|10457|glycoprotein (transmembrane) nmb##X76534|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297055|GPNMB|10457|glycoprotein (transmembrane) nmb##AK303071|GPNMB|10457|glycoprotein (transmembrane) nmb##AK312279|GPNMB|10457|glycoprotein (transmembrane) nmb	0.987081	0.0	denovo_WM_7:19:0.558
chr8	98949693	98949867	reg1003871.p2	7.813	+	TSC_hg19_v1_chr8_+_98881340 NM_002380 NM_030583 BC010444 AY358895 AK075489 AL833931 AL137638	-68451	+	TSC_hg19_v1_chr8_+_98788065 BC031021 AK075326 BC014129 AL136942 AK311377 AX810698 AB528832 AF317417 AM392726 AM393691	-161655	+	AY057051 AY261384 NM_018407 AF527412 TSC_hg19_v1_chr8_+_98787993	-161879	+	AB591031 X79238 BC032700 TSC_hg19_v1_chr8_-_99057620	107828	-	L05095 TSC_hg19_v1_chr8_-_99057755	107973	-	BC095426 TSC_hg19_v1_chr8_-_99057774 AK312102 D28438 AK308890 NM_000989	108016	-	NM_002380|MATN2|4147|matrilin 2##NM_030583|MATN2|4147|matrilin 2##BC010444|MATN2|4147|matrilin 2##AY358895|MATN2|4147|matrilin 2##AK075489|MATN2|4147|matrilin 2##AL833931|MATN2|4147|matrilin 2##AL137638|MATN2|4147|matrilin 2##BC031021|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AK075326|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##BC014129|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AL136942|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AK311377|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AF317417|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AM392726|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AM393691|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AY057051|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AY261384|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##NM_018407|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AF527412|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##X79238|RPL30|6156|ribosomal protein L30##BC032700|RPL30|6156|ribosomal protein L30##L05095|RPL30|6156|ribosomal protein L30##BC095426|RPL30|6156|ribosomal protein L30##AK312102|RPL30|6156|ribosomal protein L30##D28438|RPL30|6156|ribosomal protein L30##AK308890|RPL30|6156|ribosomal protein L30##NM_000989|RPL30|6156|ribosomal protein L30	0.999607	0.0	
chr2	197014837	197015014	reg1003234.p1	7.812	+	AB463018 AF327442 AK094515 NM_018897 AB023161	-81430	-	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	-493017	+	BC029413 NM_001127257 CR749813	-493350	+	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	21354	-	TSC_hg19_v1_chr2_-_197036310 NM_004226	21393	-	BC117194 BC117198 AB037722 NM_020760	442367	-	AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##NM_004226|STK17B|9262|serine/threonine kinase 17b##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	2.518504	0.0	denovo_WM_7:0:0.562	denovo_WM_7:14:0.966	denovo_WM_7:-15:0.569
chr2	153468487	153468601	reg1003498.p1	7.811	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	-276571	+	TSC_hg19_v1_chr2_+_153191687 NM_052905	-276874	+	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	-436194	-	TSC_hg19_v1_chr2_-_153573924 U70667 AF049524 AF049528 BC000273 BC073138 BC011788 AF049523 AK298547 AK024810 BC029414 NM_017892	105376	-	TSC_hg19_v1_chr2_+_153574392 NM_152522 AK023109	105904	+	TSC_hg19_v1_chr2_+_153575123 AK315657	106571	+	BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2##NM_052905|FMNL2|114793|formin-like 2##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##U70667|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049524|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049528|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC000273|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC073138|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC011788|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049523|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK298547|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK024810|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC029414|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_017892|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_152522|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK023109|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK315657|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6	0.739191	0.0	denovo_WM_7:0:0.650
chr4	83811342	83811485	reg1003606.p1	7.810	+	TSC_hg19_v1_chr4_-_83719926 BC004936 BC137429 BC137432 AF389338 AK024685 NM_001037582 NM_024906	-91424	-	AK301116 BC147019 BC147027 NM_001080506 AK297512	-328299	-	TSC_hg19_v1_chr4_+_83351969 AB528563 CR457141	-459444	+	TSC_hg19_v1_chr4_-_83812296 BC084583 AB018358 AB018359 BC031292 AK225934 BC143489 BC117221 BC143491 BC143492	872	-	AK002161 CR933696 TSC_hg19_v1_chr4_-_83812319	899	-	TSC_hg19_v1_chr4_-_83812330 AK295810	915	-	BC004936|SCD5|79966|stearoyl-CoA desaturase 5##BC137429|SCD5|79966|stearoyl-CoA desaturase 5##BC137432|SCD5|79966|stearoyl-CoA desaturase 5##AF389338|SCD5|79966|stearoyl-CoA desaturase 5##AK024685|SCD5|79966|stearoyl-CoA desaturase 5##NM_001037582|SCD5|79966|stearoyl-CoA desaturase 5##NM_024906|SCD5|79966|stearoyl-CoA desaturase 5##AK301116|TMEM150C|441027|transmembrane protein 150C##BC147019|TMEM150C|441027|transmembrane protein 150C##BC147027|TMEM150C|441027|transmembrane protein 150C##NM_001080506|TMEM150C|441027|transmembrane protein 150C##AK297512|TMEM150C|441027|transmembrane protein 150C##CR457141|ENOPH1|58478|enolase-phosphatase 1##BC084583|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##AB018358|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##AB018359|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC031292|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##AK225934|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC143489|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC117221|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC143491|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##BC143492|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##AK002161|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##CR933696|SEC31A|22872|SEC31 homolog A (S. cerevisiae)##AK295810|SEC31A|22872|SEC31 homolog A (S. cerevisiae)	0.998984	0.0	
chr6	22271383	22271558	reg1004365.p1	7.810	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-604811	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-677098	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1736747	+	BC015850 NM_000948	26259	-	X54394 X54393 GQ305133 M58594 NM_001163558	31577	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	298255	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	0.0	0.0	
chrX	3730059	3730221	reg1003536.p2	7.810	+	TSC_hg19_v1_chrX_-_3631668 NM_005044	-98422	-	TSC_hg19_v1_chrX_-_3631645 X85545	-98495	-	TSC_hg19_v1_chrX_-_3631619 BC041073	-98598	-	AB033086 AF376803 AX773938 NM_020742	2415747	-	AK055471 BC034018 NM_181332	2416540	-	AF167078 AF167079 NM_016379	2723018	-	NM_005044|PRKX|5613|protein kinase, X-linked##X85545|PRKX|5613|protein kinase, X-linked##BC041073|PRKX|5613|protein kinase, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A	0.0	0.0	
chr19	45288082	45288250	reg1003682.p2	7.809	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	-7010	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	-36185	+	BC144608 NM_001039213	-85746	+	TSC_hg19_v1_chr19_+_45312359 BC014065 NM_001013257 NM_005581 X83425 BC036745 X80026 BC050450 AB463427 CU690688 HE572749	24190	+	NM_001042724 NM_002856 TSC_hg19_v1_chr19_+_45349482	61276	+	TSC_hg19_v1_chr19_+_45349564 AK291330	61397	+	AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001013257|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_005581|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X83425|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC036745|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X80026|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC050450|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_001042724|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_002856|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##AK291330|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)	1.99289	0.0	
chr14	98086861	98087041	reg1000667.p1	7.808	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-823236	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-1118167	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-1118205	+	AK098639 NM_182560	1090998	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1650666	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1650939	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.48281	0.0	
chr19	2074473	2074603	reg1002933.p2	7.808	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-23305	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-28297	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-32488	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	10705	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	21727	-	TSC_hg19_v1_chr19_-_2096297 AL832474	21756	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	0.989411	0.0	denovo_WM_7:24:0.977
chr4	40464428	40464608	reg1004296.p2	7.808	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-127073	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-265877	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-405986	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	52066	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	53440	-	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	167347	-	BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47	0.0	0.026035	
chr6_dbb_hap3	4567230	4567409	reg1004057.p2	7.807	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.029796	0.0	denovo_WM_7:-4:0.527	denovo_WM_7:-5:0.470
chr19	55645019	55645152	reg1004032.p1	7.806	+	AB209452 TSC_hg19_v1_chr19_-_55629006 AF312028 NM_017607	-16153	-	AK000265 AK301615 NM_017729 BC015763 CU677435	-53276	+	AK309305 NM_133180 AF370395 AK075098 AK296732	-57840	+	TSC_hg19_v1_chr19_-_55658311 AY762903 AY762904 BT019630 S51938	13332	-	S69208 S69209 BC022086 BC010963 AK291352 AK308199 BC007074 BC034143 BC107798 M19308 M19309 TSC_hg19_v1_chr19_-_55660575 NM_001126132 NM_001126133 NM_003283	15496	-	BT019517 CR541985 CR542012 M64247 BC096165 BC096166 BC096167 BC099631 X54163 AK223451 EU747720 NM_000363	23942	-	AB209452|PPP1R12C|54776|protein phosphatase 1, regulatory subunit 12C##AF312028|PPP1R12C|54776|protein phosphatase 1, regulatory subunit 12C##NM_017607|PPP1R12C|54776|protein phosphatase 1, regulatory subunit 12C##AK000265|EPS8L1|54869|EPS8-like 1##AK301615|EPS8L1|54869|EPS8-like 1##NM_017729|EPS8L1|54869|EPS8-like 1##BC015763|EPS8L1|54869|EPS8-like 1##AK309305|EPS8L1|54869|EPS8-like 1##NM_133180|EPS8L1|54869|EPS8-like 1##AF370395|EPS8L1|54869|EPS8-like 1##AK075098|EPS8L1|54869|EPS8-like 1##AK296732|EPS8L1|54869|EPS8-like 1##AY762903|TNNT1|7138|troponin T type 1 (skeletal, slow)##AY762904|TNNT1|7138|troponin T type 1 (skeletal, slow)##BT019630|TNNT1|7138|troponin T type 1 (skeletal, slow)##S51938|TNNT1|7138|troponin T type 1 (skeletal, slow)##S69208|TNNT1|7138|troponin T type 1 (skeletal, slow)##S69209|TNNT1|7138|troponin T type 1 (skeletal, slow)##BC022086|TNNT1|7138|troponin T type 1 (skeletal, slow)##BC010963|TNNT1|7138|troponin T type 1 (skeletal, slow)##AK291352|TNNT1|7138|troponin T type 1 (skeletal, slow)##AK308199|TNNT1|7138|troponin T type 1 (skeletal, slow)##BC007074|TNNT1|7138|troponin T type 1 (skeletal, slow)##BC034143|TNNT1|7138|troponin T type 1 (skeletal, slow)##BC107798|TNNT1|7138|troponin T type 1 (skeletal, slow)##M19308|TNNT1|7138|troponin T type 1 (skeletal, slow)##M19309|TNNT1|7138|troponin T type 1 (skeletal, slow)##NM_001126132|TNNT1|7138|troponin T type 1 (skeletal, slow)##NM_001126133|TNNT1|7138|troponin T type 1 (skeletal, slow)##NM_003283|TNNT1|7138|troponin T type 1 (skeletal, slow)##BT019517|TNNI3|7137|troponin I type 3 (cardiac)##CR541985|TNNI3|7137|troponin I type 3 (cardiac)##CR542012|TNNI3|7137|troponin I type 3 (cardiac)##M64247|TNNI3|7137|troponin I type 3 (cardiac)##BC096165|TNNI3|7137|troponin I type 3 (cardiac)##BC096166|TNNI3|7137|troponin I type 3 (cardiac)##BC096167|TNNI3|7137|troponin I type 3 (cardiac)##BC099631|TNNI3|7137|troponin I type 3 (cardiac)##X54163|TNNI3|7137|troponin I type 3 (cardiac)##AK223451|TNNI3|7137|troponin I type 3 (cardiac)##EU747720|TNNI3|7137|troponin I type 3 (cardiac)##NM_000363|TNNI3|7137|troponin I type 3 (cardiac)	1.857513	0.0	denovo_WM_7:-12:0.228	denovo_WM_7:-14:0.609	denovo_WM_7:-29:0.801
chr5	108745422	108745565	reg1004535.p4	7.804	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-660821	+	AK293376 J03358 NM_005246 AK296874	-661931	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-681513	-	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	128	-	TSC_hg19_v1_chr5_+_109025072 BC031659	279571	+	TSC_hg19_v1_chr5_+_109025096 BC111062	279604	+	AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.99497	0.0	denovo_WM_7:32:0.324	denovo_WM_7:33:0.324	denovo_WM_7:34:0.324
chr5	133404036	133404200	reg1004480.p1	7.804	+	AK095989 NM_003374	-63295	-	TSC_hg19_v1_chr5_-_133340431 L06132	-63688	-	TSC_hg19_v1_chr5_-_133340397 BC071168 AK293639	-63717	-	TSC_hg19_v1_chr5_+_133450435 BC048769 NM_003202 BC072023 EU446661 AL832816	46401	+	NM_001134851 NM_201632 NM_201634 NM_213648 X59869 X59870 X59871 AK057580 AK093530	47243	+	BC009839 U33760 BC025673 TSC_hg19_v1_chr5_-_133512639 BC065730	108505	-	AK095989|VDAC1|7416|voltage-dependent anion channel 1##NM_003374|VDAC1|7416|voltage-dependent anion channel 1##L06132|VDAC1|7416|voltage-dependent anion channel 1##BC071168|VDAC1|7416|voltage-dependent anion channel 1##AK293639|VDAC1|7416|voltage-dependent anion channel 1##BC048769|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_003202|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC072023|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##EU446661|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AL832816|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_001134851|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201632|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201634|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_213648|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59869|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59870|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59871|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK057580|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK093530|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC009839|SKP1|6500|S-phase kinase-associated protein 1##U33760|SKP1|6500|S-phase kinase-associated protein 1##BC025673|SKP1|6500|S-phase kinase-associated protein 1##BC065730|SKP1|6500|S-phase kinase-associated protein 1	1.98304	0.0	denovo_WM_7:-7:0.631	denovo_WM_7:-84:0.915
chr8	56822384	56822513	reg1004264.p2	7.802	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-29928	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-30053	+	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	-30083	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	164638	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	204092	-	TSC_hg19_v1_chr8_-_57123833 U65002	301387	-	AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1	0.0	0.0	
chr10	27147437	27147587	reg1003546.p4	7.801	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-89695	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-160866	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-160928	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	2328	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	2427	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	2493	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	1.991486	0.0	denovo_WM_7:-26:0.372	denovo_WM_7:-27:0.350	denovo_WM_7:-42:0.488	denovo_WM_7:-45:0.322
chr13	109319637	109319765	reg1004531.p2	7.801	+	AB290159 AK127806 NM_001198950	-38132	+	AB020672 BC146791 NM_015011 AL834447	-71187	+	DQ857728 TSC_hg19_v1_chr13_+_108955871	-363884	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	1119207	-	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	1483034	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	1639808	-	AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1	0.982291	0.0	denovo_WM_7:-23:0.486	denovo_WM_7:-24:0.486
chr7	138792977	138793089	reg1003947.p2	7.801	+	TSC_hg19_v1_chr7_-_138720787 BC008842 NM_080660 BC020784	-72199	-	TSC_hg19_v1_chr7_-_138666114 AM989468 AM989469 AM989472 AM989473 AM989474 NM_001164665 NM_020910	-126800	-	BC109304 BC109305 AF245517 AK292945 NM_020632 NM_130840	-310139	-	AK055851 BX647974 TSC_hg19_v1_chr7_-_138794101	1068	-	TSC_hg19_v1_chr7_-_138794133 AK292811	1140	-	BC025308 BC033105 BC040956 NM_020119 NM_024625 BX571742 TSC_hg19_v1_chr7_-_138794467	1397	-	BC008842|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##NM_080660|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##BC020784|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##AM989468|KIAA1549|57670|KIAA1549##AM989469|KIAA1549|57670|KIAA1549##NM_001164665|KIAA1549|57670|KIAA1549##NM_020910|KIAA1549|57670|KIAA1549##BC109304|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##BC109305|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AF245517|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK292945|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_020632|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_130840|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK055851|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX647974|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##AK292811|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC025308|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC033105|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC040956|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_020119|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_024625|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX571742|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1	0.967271	0.0	denovo_WM_7:-8:0.728	denovo_WM_7:-10:0.227
chr9	82220842	82221022	reg1001514.p1	7.801	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-33247	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-33408	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-34046	+	BC010100 NM_005077	2082663	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2083495	-	NM_001145197 AK125847 AK308327	2322439	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	0.0	0.0	
chr4	492414	492594	reg1004513.p1	7.800	+	BC098116 BC098259 BC098291 BC099730 TSC_hg19_v1_chr4_-_467940 BC040413 BC036795 BC060316 BC065035 AK024359 AK303674	-24601	-	TSC_hg19_v1_chr4_+_331608 BC036854 BC057244 L15309 BC074853	-160834	+	TSC_hg19_v1_chr4_+_331602 NM_003441	-160909	+	TSC_hg19_v1_chr4_-_492928 AL834155 AK021514	416	-	NM_001127178 NM_017733 TSC_hg19_v1_chr4_+_493009 AK296507 AK074815 AB162713	499	+	TSC_hg19_v1_chr4_+_493025 AK074715 AK097244 AK309107 BC144576	522	+	BC098116|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098259|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098291|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC099730|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC040413|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC060316|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK024359|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK303674|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC036854|ZNF141|7700|zinc finger protein 141##BC057244|ZNF141|7700|zinc finger protein 141##L15309|ZNF141|7700|zinc finger protein 141##BC074853|ZNF141|7700|zinc finger protein 141##NM_003441|ZNF141|7700|zinc finger protein 141##AL834155|ZNF721|170960|zinc finger protein 721##AK021514|ZNF721|170960|zinc finger protein 721##NM_001127178|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##NM_017733|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK296507|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074815|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AB162713|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074715|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK097244|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK309107|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##BC144576|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G	0.997852	0.0	denovo_WM_7:19:0.305	denovo_WM_7:20:0.305	denovo_WM_7:21:0.305
chr7	115051035	115051207	reg1004194.p1	7.799	+	BC040713 TSC_hg19_v1_chr7_+_114562979 AY196485	-488165	+	TSC_hg19_v1_chr7_+_114562148 AF054589 NM_001166345 NM_001166346 NM_199072	-488947	+	AF467253 NM_001172767 NM_148899 U80741 AF467258 AF467259 TSC_hg19_v1_chr7_+_114066703	-984491	+	AJ608795 NM_001244583	557245	-	TSC_hg19_v1_chr7_-_115670796 D43945 BC029891	619665	-	TSC_hg19_v1_chr7_-_115670820 AK313546	619697	-	BC040713|MDFIC|29969|MyoD family inhibitor domain containing##AY196485|MDFIC|29969|MyoD family inhibitor domain containing##AF054589|MDFIC|29969|MyoD family inhibitor domain containing##NM_001166345|MDFIC|29969|MyoD family inhibitor domain containing##NM_001166346|MDFIC|29969|MyoD family inhibitor domain containing##NM_199072|MDFIC|29969|MyoD family inhibitor domain containing##AF467253|FOXP2|93986|forkhead box P2##NM_001172767|FOXP2|93986|forkhead box P2##NM_148899|FOXP2|93986|forkhead box P2##AF467258|FOXP2|93986|forkhead box P2##AF467259|FOXP2|93986|forkhead box P2##AJ608795|TFEC|22797|transcription factor EC##NM_001244583|TFEC|22797|transcription factor EC##D43945|TFEC|22797|transcription factor EC##BC029891|TFEC|22797|transcription factor EC##AK313546|TFEC|22797|transcription factor EC	1.99499	0.0	denovo_WM_7:-5:0.249	denovo_WM_7:-6:0.249	denovo_WM_7:-7:0.249	denovo_WM_7:-8:0.249	denovo_WM_7:-72:0.739
chr8	105544509	105544664	reg1004328.p1	7.799	+	CU689878 BC034395 D78011 NM_001385 TSC_hg19_v1_chr8_-_105479284	-65371	-	TSC_hg19_v1_chr8_+_105352053 AF277290 AF305068 AK095417 BC069349 NM_030788	-192534	+	NM_014677 AK307790 AB018294 BC043144 AK308831 BC018057 AB384521 CU692140	-713011	+	CU689274 DQ892323 DQ895525 BC032109 AK289752 AF166350 TSC_hg19_v1_chr8_-_105601191 CR749434 AF064841	56589	-	TSC_hg19_v1_chr8_-_105601235 AK299374 NM_001135703 NM_013437	56661	-	AF119334 BC109222 BC109223 NM_012082	786560	+	BC034395|DPYS|1807|dihydropyrimidinase##D78011|DPYS|1807|dihydropyrimidinase##NM_001385|DPYS|1807|dihydropyrimidinase##AF277290|TM7SF4|81501|transmembrane 7 superfamily member 4##AF305068|TM7SF4|81501|transmembrane 7 superfamily member 4##AK095417|TM7SF4|81501|transmembrane 7 superfamily member 4##BC069349|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_030788|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_014677|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK307790|RIMS2|9699|regulating synaptic membrane exocytosis 2##AB018294|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC043144|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK308831|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC018057|RIMS2|9699|regulating synaptic membrane exocytosis 2##DQ892323|LRP12|29967|low density lipoprotein receptor-related protein 12##DQ895525|LRP12|29967|low density lipoprotein receptor-related protein 12##BC032109|LRP12|29967|low density lipoprotein receptor-related protein 12##AK289752|LRP12|29967|low density lipoprotein receptor-related protein 12##AF166350|LRP12|29967|low density lipoprotein receptor-related protein 12##CR749434|LRP12|29967|low density lipoprotein receptor-related protein 12##AF064841|LRP12|29967|low density lipoprotein receptor-related protein 12##AK299374|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_001135703|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_013437|LRP12|29967|low density lipoprotein receptor-related protein 12##AF119334|ZFPM2|23414|zinc finger protein, multitype 2##BC109222|ZFPM2|23414|zinc finger protein, multitype 2##BC109223|ZFPM2|23414|zinc finger protein, multitype 2##NM_012082|ZFPM2|23414|zinc finger protein, multitype 2	0.999655	0.0	denovo_WM_7:22:0.298	denovo_WM_7:23:0.298	denovo_WM_7:24:0.298
chr7	22605023	22605178	reg1005359.p1	7.798	+	BC066301 TSC_hg19_v1_chr7_-_22539806 AK308991 NM_001164460 NM_207342	-65253	-	AL833195 NM_012294	-208579	-	AB463479 AY161168 AY161169 CU691768 CU692942 BC009352 TSC_hg19_v1_chr7_-_21985500 AK095965 BC025242 BC032576 AK300781 BC039823 AK022955 AK292490 NM_001127370 NM_001127371 NM_018719	-619618	-	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	161723	+	TSC_hg19_v1_chr7_+_22767104 X04403	162018	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	257343	-	BC066301|STEAP1B|256227|STEAP family member 1B##AK308991|STEAP1B|256227|STEAP family member 1B##NM_001164460|STEAP1B|256227|STEAP family member 1B##NM_207342|STEAP1B|256227|STEAP family member 1B##AL833195|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##NM_012294|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##AY161168|CDCA7L|55536|cell division cycle associated 7-like##AY161169|CDCA7L|55536|cell division cycle associated 7-like##BC009352|CDCA7L|55536|cell division cycle associated 7-like##AK095965|CDCA7L|55536|cell division cycle associated 7-like##BC025242|CDCA7L|55536|cell division cycle associated 7-like##BC032576|CDCA7L|55536|cell division cycle associated 7-like##AK300781|CDCA7L|55536|cell division cycle associated 7-like##BC039823|CDCA7L|55536|cell division cycle associated 7-like##AK022955|CDCA7L|55536|cell division cycle associated 7-like##AK292490|CDCA7L|55536|cell division cycle associated 7-like##NM_001127370|CDCA7L|55536|cell division cycle associated 7-like##NM_001127371|CDCA7L|55536|cell division cycle associated 7-like##NM_018719|CDCA7L|55536|cell division cycle associated 7-like##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)	0.994957	0.0	denovo_WM_7:12:0.629	denovo_WM_7:13:0.244
chr12	46139802	46139944	reg1003674.p1	7.797	+	TSC_hg19_v1_chr12_+_46123498 AB527360 AY727870 DQ096628 NM_152641 CR749833	-16276	+	TSC_hg19_v1_chr12_+_46123488 AK127872	-16390	+	TSC_hg19_v1_chr12_-_46121531 BC047417	-18343	-	AB463286 TSC_hg19_v1_chr12_-_46357972	218087	-	BC017851 TSC_hg19_v1_chr12_-_46384277	244380	-	TSC_hg19_v1_chr12_-_46384319 AK302999	244452	-	AY727870|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##DQ096628|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##NM_152641|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##CR749833|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##BC047417|LOC400027|400027|uncharacterized LOC400027##BC017851|SCAF11|9169|SR-related CTD-associated factor 11##AK302999|SCAF11|9169|SR-related CTD-associated factor 11	1.984941	0.056443	denovo_WM_7:18:0.911	denovo_WM_7:-95:0.988
chr18	67753897	67754032	reg1003926.p1	7.796	+	GU935335 GU935336 U56102 NM_006566	-129769	-	AK313199 TSC_hg19_v1_chr18_-_67615110	-138865	-	TSC_hg19_v1_chr18_+_67068214 NM_152721 AY599248 BC096744	-685734	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	118974	-	NM_004232 TSC_hg19_v1_chr18_+_67956194	202203	+	TSC_hg19_v1_chr18_+_67956280 BC020082	202297	+	GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule##AK313199|CD226|10666|CD226 molecule##NM_152721|DOK6|220164|docking protein 6##AY599248|DOK6|220164|docking protein 6##BC096744|DOK6|220164|docking protein 6##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC020082|SOCS6|9306|suppressor of cytokine signaling 6	1.992355	0.998355	CTCF.p2:21:0.998
chr14	100624369	100624546	reg1004767.p2	7.795	+	AF131766 TSC_hg19_v1_chr14_+_100563847	-60624	+	TSC_hg19_v1_chr14_+_100531768 AF087843 BC032358 AF052504	-92662	+	TSC_hg19_v1_chr14_+_100531758 NM_016337 AK301379	-92705	+	AY541700 BC063598 TSC_hg19_v1_chr14_-_100626009 NM_206918	1514	-	NM_003403 TSC_hg19_v1_chr14_+_100705177	80685	+	TSC_hg19_v1_chr14_+_100705309 M77698	80855	+	AF131766|EVL|51466|Enah/Vasp-like##AF087843|EVL|51466|Enah/Vasp-like##BC032358|EVL|51466|Enah/Vasp-like##AF052504|EVL|51466|Enah/Vasp-like##NM_016337|EVL|51466|Enah/Vasp-like##AK301379|EVL|51466|Enah/Vasp-like##AY541700|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##BC063598|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##NM_206918|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##NM_003403|YY1|7528|YY1 transcription factor##M77698|YY1|7528|YY1 transcription factor	0.999674	0.0	
chr6	54668883	54669011	reg1004492.p2	7.795	+	BC070278 NM_014464 AK312918 BC056235 AB022277 AF195116 AF195117 CU687080 CU691132 EU832329 EU832414	-495672	+	NM_138569 BX647567 AK055530	-785197	+	TSC_hg19_v1_chr6_+_53659802 AF332199 AK292248 AB527517 AF359380 CU678434 EU176638 AK001637	-1009016	+	AK055204 NM_001010872 BC101628 BC112275	42641	+	NM_001526 AK314279	370147	+	AY358198 NM_207410	523319	+	BC070278|TINAG|27283|tubulointerstitial nephritis antigen##NM_014464|TINAG|27283|tubulointerstitial nephritis antigen##AK312918|TINAG|27283|tubulointerstitial nephritis antigen##BC056235|TINAG|27283|tubulointerstitial nephritis antigen##AB022277|TINAG|27283|tubulointerstitial nephritis antigen##AF195116|TINAG|27283|tubulointerstitial nephritis antigen##AF195117|TINAG|27283|tubulointerstitial nephritis antigen##EU832329|TINAG|27283|tubulointerstitial nephritis antigen##EU832414|TINAG|27283|tubulointerstitial nephritis antigen##NM_138569|MLIP|90523|muscular LMNA-interacting protein##BX647567|MLIP|90523|muscular LMNA-interacting protein##AK055530|MLIP|90523|muscular LMNA-interacting protein##AF332199|LRRC1|55227|leucine rich repeat containing 1##AK292248|LRRC1|55227|leucine rich repeat containing 1##AF359380|LRRC1|55227|leucine rich repeat containing 1##EU176638|LRRC1|55227|leucine rich repeat containing 1##AK001637|LRRC1|55227|leucine rich repeat containing 1##AK055204|FAM83B|222584|family with sequence similarity 83, member B##NM_001010872|FAM83B|222584|family with sequence similarity 83, member B##BC101628|FAM83B|222584|family with sequence similarity 83, member B##BC112275|FAM83B|222584|family with sequence similarity 83, member B##NM_001526|HCRTR2|3062|hypocretin (orexin) receptor 2##AK314279|HCRTR2|3062|hypocretin (orexin) receptor 2##AY358198|GFRAL|389400|GDNF family receptor alpha like##NM_207410|GFRAL|389400|GDNF family receptor alpha like	0.999598	0.0	
chr11	4079093	4079196	reg1004021.p1	7.793	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-202215	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-216945	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-216989	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	36845	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	36922	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	37015	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.994747	0.0	denovo_WM_7:-34:0.309	denovo_WM_7:-35:0.309	denovo_WM_7:-36:0.309
chr16	74992502	74992630	reg1005195.p1	7.793	+	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	-183842	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	-183981	-	BC028141 AK091708 AX747141 NM_001142497 NM_152649	-257829	-	CU678744 TSC_hg19_v1_chr16_-_75018978 BC004519	26393	-	TSC_hg19_v1_chr16_-_75019011 NM_030581	26459	-	TSC_hg19_v1_chr16_+_75032911 NM_032268	40328	+	BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##BC004519|WDR59|79726|WD repeat domain 59##NM_030581|WDR59|79726|WD repeat domain 59##NM_032268|ZNRF1|84937|zinc and ring finger 1	1.97368	0.0	denovo_WM_7:-51:0.735	denovo_WM_7:-52:0.237	denovo_WM_7:-66:0.373	denovo_WM_7:-67:0.610
chr10	97522043	97522223	reg1001975.p2	7.790	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-6593	+	AJ133133 AJ133134 NM_001098175	-50598	+	BC068449 DQ278872 NM_001143973 NM_015631	-68234	-	AK294399 NM_001130446	145588	+	NM_001001732 NM_001159747 AK302377 BC075861	237731	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	281248	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.99694	0.048909	denovo_WM_7:22:0.239	denovo_WM_7:23:0.239	denovo_WM_7:24:0.239	denovo_WM_7:25:0.239
chr16	22110368	22110517	reg1003895.p1	7.788	+	AK098260 AK128606 AK307544 NM_173615	-6581	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-90954	+	BC039562 BC021724 BC028605 NM_173806	-98014	-	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	107231	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	198306	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	275353	-	AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##BC039562|PDZD9|255762|PDZ domain containing 9##BC021724|PDZD9|255762|PDZ domain containing 9##BC028605|PDZD9|255762|PDZ domain containing 9##NM_173806|PDZD9|255762|PDZ domain containing 9##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa	0.99918	0.540021	denovo_WM_7:-15:0.716	denovo_WM_7:-17:0.228	CTCF.p2:55:0.540
chr20	47463807	47463987	reg1003352.p2	7.788	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-19458	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-19611	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1048579	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	74421	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	198929	+	TSC_hg19_v1_chr20_+_47662875 AF053640	198991	+	AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)	0.99124	0.0	
chr16	11009727	11009870	reg1004602.p1	7.787	+	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	-38686	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-97250	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-172094	+	BC071683 TSC_hg19_v1_chr16_-_11036171	26368	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	26437	-	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	28645	+	AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A	0.040706	0.0	
chr6	108848022	108848133	reg1004172.p1	7.787	+	TSC_hg19_v1_chr6_+_108616194 AF520418 BC018445 NM_145315	-231938	+	TSC_hg19_v1_chr6_-_108582316 NM_003795 NM_152827	-265692	-	TSC_hg19_v1_chr6_-_108582245 BC015179 BC014580 AK289476	-265839	-	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	32946	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	33998	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	34180	+	AF520418|LACE1|246269|lactation elevated 1##BC018445|LACE1|246269|lactation elevated 1##NM_145315|LACE1|246269|lactation elevated 1##NM_003795|SNX3|8724|sorting nexin 3##NM_152827|SNX3|8724|sorting nexin 3##BC015179|SNX3|8724|sorting nexin 3##BC014580|SNX3|8724|sorting nexin 3##AK289476|SNX3|8724|sorting nexin 3##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3	0.809474	0.920857	CTCF.p2:-6:0.921	denovo_WM_7:24:0.382	denovo_WM_7:26:0.427
chr10	26917561	26917733	reg1003969.p1	7.785	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-189941	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-189979	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-190330	+	AK096048 TSC_hg19_v1_chr10_-_26986612	68937	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	68999	+	TSC_hg19_v1_chr10_-_27057776 AK315914	140170	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	0.991884	0.0	denovo_WM_7:35:0.624	denovo_WM_7:36:0.210
chr4	42490327	42490456	reg1003864.p1	7.785	+	NM_001080505	-90536	+	AB126828 AB126829 NM_001159547 NM_207406	-335497	-	TSC_hg19_v1_chr4_-_42154719 AK125953 AB463533	-335735	-	BC109317 AB013452 AF067820 BC109318 AB587324 TSC_hg19_v1_chr4_-_42659111 AB209687 BC020943 AK295616 NM_001105529 NM_006095	168697	-	AB528853 NM_001080476	404890	+	AK298831 HQ258617 TSC_hg19_v1_chr4_-_44450559 BC132743 BC136793	1960162	-	NM_001080505|SHISA3|152573|shisa homolog 3 (Xenopus laevis)##AB126828|BEND4|389206|BEN domain containing 4##AB126829|BEND4|389206|BEN domain containing 4##NM_001159547|BEND4|389206|BEN domain containing 4##NM_207406|BEND4|389206|BEN domain containing 4##AK125953|BEND4|389206|BEN domain containing 4##BC109317|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB013452|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AF067820|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC109318|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB209687|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC020943|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001105529|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_006095|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001080476|GRXCR1|389207|glutaredoxin, cysteine rich 1##AK298831|KCTD8|386617|potassium channel tetramerisation domain containing 8##HQ258617|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC132743|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC136793|KCTD8|386617|potassium channel tetramerisation domain containing 8	0.950951	0.0	denovo_WM_7:33:0.708
chr6	167403274	167403390	reg1004103.p2	7.785	+	AK315467 TSC_hg19_v1_chr6_-_167370038 BC036282 NM_003730	-33275	-	TSC_hg19_v1_chr6_-_167370030 BC001660 BC001819 BC039713 BC051912 AJ419865 AJ419866 AJ419867 U85625	-33322	-	DQ884402 TSC_hg19_v1_chr6_-_167369732	-33630	-	TSC_hg19_v1_chr6_+_167412884 NM_007045 NM_194429 Y18046 AK294950 AK289846 BX647686 AK312791 BC011902 AB590215 CU680104 DQ893037 DQ896278 AJ420472	9521	+	NM_004367	121962	+	NM_031409 U68031 U68030	132917	+	AK315467|RNASET2|8635|ribonuclease T2##BC036282|RNASET2|8635|ribonuclease T2##NM_003730|RNASET2|8635|ribonuclease T2##BC001660|RNASET2|8635|ribonuclease T2##BC001819|RNASET2|8635|ribonuclease T2##BC039713|RNASET2|8635|ribonuclease T2##BC051912|RNASET2|8635|ribonuclease T2##AJ419865|RNASET2|8635|ribonuclease T2##AJ419866|RNASET2|8635|ribonuclease T2##AJ419867|RNASET2|8635|ribonuclease T2##U85625|RNASET2|8635|ribonuclease T2##NM_007045|FGFR1OP|11116|FGFR1 oncogene partner##NM_194429|FGFR1OP|11116|FGFR1 oncogene partner##Y18046|FGFR1OP|11116|FGFR1 oncogene partner##AK294950|FGFR1OP|11116|FGFR1 oncogene partner##AK289846|FGFR1OP|11116|FGFR1 oncogene partner##AK312791|FGFR1OP|11116|FGFR1 oncogene partner##BC011902|FGFR1OP|11116|FGFR1 oncogene partner##DQ893037|FGFR1OP|11116|FGFR1 oncogene partner##DQ896278|FGFR1OP|11116|FGFR1 oncogene partner##AJ420472|FGFR1OP|11116|FGFR1 oncogene partner##NM_004367|CCR6|1235|chemokine (C-C motif) receptor 6##NM_031409|CCR6|1235|chemokine (C-C motif) receptor 6##U68031|CCR6|1235|chemokine (C-C motif) receptor 6##U68030|CCR6|1235|chemokine (C-C motif) receptor 6	0.419424	0.833262	CTCF.p2:-8:0.833	denovo_WM_7:36:0.311
chrX	118781880	118782004	reg1003723.p1	7.784	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-42114	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-54960	-	BC042021 NM_181777	-67645	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	45143	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	45190	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	45237	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.0	0.0	
chr8	125462900	125463038	reg1004271.p1	7.783	+	TSC_hg19_v1_chr8_-_125384925 BC041379 NM_194291	-78017	-	BC101502 BC101506 AK057332 TSC_hg19_v1_chr8_-_125183771	-279231	-	AB196633 NM_001039112	-598743	+	TSC_hg19_v1_chr8_+_125463060 NM_017956 AK225083 AK000779 AK222727 BC011713 BC003057	103	+	TSC_hg19_v1_chr8_-_125486793 CR933665	23808	-	TSC_hg19_v1_chr8_-_125486808 AK075052	23862	-	BC041379|TMEM65|157378|transmembrane protein 65##NM_194291|TMEM65|157378|transmembrane protein 65##BC101502|C8orf78|157376|chromosome 8 open reading frame 78##BC101506|C8orf78|157376|chromosome 8 open reading frame 78##AK057332|C8orf78|157376|chromosome 8 open reading frame 78##AB196633|FER1L6|654463|fer-1-like 6 (C. elegans)##NM_001039112|FER1L6|654463|fer-1-like 6 (C. elegans)##NM_017956|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##AK225083|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##AK000779|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##AK222727|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##BC011713|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##BC003057|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)	0.0	0.0	
chr17	74478871	74478993	reg1003419.p2	7.782	+	NM_001088 U40347 AB593119 BC069434	-15275	+	BC092430 NM_001166579	-29500	+	TSC_hg19_v1_chr17_-_74449273 AB051521 NM_022066	-29644	-	AK303434 AY500247 AK292166 NM_001005498	4966	-	TSC_hg19_v1_chr17_-_74497506 BC016034 AK292135 NM_024599	18527	-	AJ315162 AK098057 BC029798 AB057769 BC018822 NM_134268	54770	-	NM_001088|AANAT|15|aralkylamine N-acetyltransferase##U40347|AANAT|15|aralkylamine N-acetyltransferase##AB593119|AANAT|15|aralkylamine N-acetyltransferase##BC069434|AANAT|15|aralkylamine N-acetyltransferase##BC092430|AANAT|15|aralkylamine N-acetyltransferase##NM_001166579|AANAT|15|aralkylamine N-acetyltransferase##AB051521|UBE2O|63893|ubiquitin-conjugating enzyme E2O##NM_022066|UBE2O|63893|ubiquitin-conjugating enzyme E2O##AK303434|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AY500247|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292166|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001005498|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##BC016034|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292135|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_024599|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AJ315162|CYGB|114757|cytoglobin##AK098057|CYGB|114757|cytoglobin##BC029798|CYGB|114757|cytoglobin##AB057769|CYGB|114757|cytoglobin##NM_134268|CYGB|114757|cytoglobin	1.880604	0.0	denovo_WM_7:24:0.740	denovo_WM_7:25:0.227	denovo_WM_7:-69:0.882
chr19	19268760	19268940	reg1005250.p1	7.782	+	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	-19575	-	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	-19596	-	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	-94041	+	TSC_hg19_v1_chr19_-_19281067 AK057210	12217	-	TSC_hg19_v1_chr19_-_19281094 NM_001145785	12243	-	TSC_hg19_v1_chr19_-_19302962 X68502 EU831418 EU831443 EU831511 EU831535 X63380 BC064537 BC000489 BC004449 BC010178 BC010931 AK301086 AK316328 BC157868 BC171869	34114	-	BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK057210|MEF2B|100271849|myocyte enhancer factor 2B##NM_001145785|MEF2B|100271849|myocyte enhancer factor 2B##X68502|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##EU831418|MEF2BNB|729991|MEF2B neighbor##EU831443|MEF2BNB|729991|MEF2B neighbor##EU831511|MEF2BNB|729991|MEF2B neighbor##EU831535|MEF2BNB|729991|MEF2B neighbor##X63380|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC064537|MEF2BNB|729991|MEF2B neighbor##BC000489|MEF2BNB|729991|MEF2B neighbor##BC004449|MEF2BNB|729991|MEF2B neighbor##BC010178|MEF2BNB|729991|MEF2B neighbor##BC010931|MEF2BNB|729991|MEF2B neighbor##AK301086|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##AK316328|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC157868|MEF2BNB|729991|MEF2B neighbor##BC171869|MEF2BNB|729991|MEF2B neighbor	0.991423	0.0	denovo_WM_7:57:0.853
chr2	197792061	197792226	reg1004707.p2	7.782	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-699	-	BC137150 BC137151 AY358249 NM_213608	-117206	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-127730	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	383239	-	TSC_hg19_v1_chr2_-_198175459 BC063622	383330	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	383376	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	1.987659	0.0	denovo_WM_7:-3:0.796	denovo_WM_7:11:0.777
chr6_mcf_hap5	4765869	4766017	reg1004482.p2	7.782	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.993248	0.0	denovo_WM_7:-24:0.480
chr17	37838511	37838642	reg1003442.p1	7.781	+	BC037246 NM_002686	-14070	+	NM_003673 BC012628 BC013330 AJ000491 DQ892812 DQ896058	-16972	+	NM_001165937 NM_001165938 NM_006804 TSC_hg19_v1_chr17_+_37793404 BC008356 AK301524 AK303114 AK300176 AK225069 BC025679 BC008747 D38255 BC019286 X80198 AK300842	-45189	+	CU679785 AY358437 TSC_hg19_v1_chr17_-_37844279 AB088396 AK314469 BC010652 AK057911 AK075474 AK289612 AK294639 AK301106 NM_033419	5711	-	TSC_hg19_v1_chr17_+_37844346 AK295195 AB025286 BC110392 NM_001005862	5782	+	TSC_hg19_v1_chr17_+_37856197 AB587321	17620	+	BC037246|PNMT|5409|phenylethanolamine N-methyltransferase##NM_002686|PNMT|5409|phenylethanolamine N-methyltransferase##NM_003673|TCAP|8557|titin-cap (telethonin)##BC012628|TCAP|8557|titin-cap (telethonin)##BC013330|TCAP|8557|titin-cap (telethonin)##AJ000491|TCAP|8557|titin-cap (telethonin)##DQ892812|TCAP|8557|titin-cap (telethonin)##DQ896058|TCAP|8557|titin-cap (telethonin)##NM_001165937|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##NM_001165938|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##NM_006804|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##BC008356|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##AK301524|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##AK303114|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##AK300176|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##AK225069|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##BC025679|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##BC008747|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##D38255|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##BC019286|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##X80198|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##AK300842|STARD3|10948|StAR-related lipid transfer (START) domain containing 3##AY358437|PGAP3|93210|post-GPI attachment to proteins 3##AB088396|PGAP3|93210|post-GPI attachment to proteins 3##AK314469|PGAP3|93210|post-GPI attachment to proteins 3##BC010652|PGAP3|93210|post-GPI attachment to proteins 3##AK057911|PGAP3|93210|post-GPI attachment to proteins 3##AK075474|PGAP3|93210|post-GPI attachment to proteins 3##AK289612|PGAP3|93210|post-GPI attachment to proteins 3##AK294639|PGAP3|93210|post-GPI attachment to proteins 3##AK301106|PGAP3|93210|post-GPI attachment to proteins 3##NM_033419|PGAP3|93210|post-GPI attachment to proteins 3##AK295195|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)##AB025286|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)##BC110392|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)##NM_001005862|ERBB2|2064|v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	1.991992	0.0	denovo_WM_7:-68:0.248	denovo_WM_7:-69:0.213	denovo_WM_7:-88:0.214	denovo_WM_7:-89:0.249
chr17	80438804	80438896	reg1004191.p1	7.780	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-22208	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-22287	+	TSC_hg19_v1_chr17_+_80416087 NM_001038618 AK056966	-22778	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	38740	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	167433	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	217684	-	BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##NM_001038618|NARF|26502|nuclear prelamin A recognition factor##AK056966|NARF|26502|nuclear prelamin A recognition factor##NM_004514|FOXK2|3607|forkhead box K2##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family	0.992509	0.019909	
chr19	38498059	38498165	reg1003219.p1	7.780	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-100200	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-100255	+	AK302913 AY026504 AK128826 NM_031951	-100838	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	216723	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	222204	-	TSC_hg19_v1_chr19_-_38720336 AK297581	222222	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	1.958344	0.0	denovo_WM_7:4:0.437	denovo_WM_7:7:0.530	denovo_WM_7:-12:0.812
chr2	46666931	46667092	reg1003814.p2	7.780	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	-142036	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	-142420	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-787937	+	NM_001145051	39692	+	BC034808 NM_080653	80084	-	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	102838	+	U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q	0.041711	0.0	
chr9	2844053	2844230	reg1003866.p1	7.779	+	TSC_hg19_v1_chr9_-_2844102 AK315531 NM_014878	-28	-	TSC_hg19_v1_chr9_-_2844084 AL832245 AK225953 AL832239	-52	-	TSC_hg19_v1_chr9_-_2844074 AK292169 BC020598	-69	-	AK127804 TSC_hg19_v1_chr9_-_3223066	378895	-	TSC_hg19_v1_chr9_-_3525889 AK310956 AK289540	681698	-	TSC_hg19_v1_chr9_-_3525983 BC022191 NM_002919 NM_134428	681863	-	AK315531|KIAA0020|9933|KIAA0020##NM_014878|KIAA0020|9933|KIAA0020##AL832245|KIAA0020|9933|KIAA0020##AK225953|KIAA0020|9933|KIAA0020##AL832239|KIAA0020|9933|KIAA0020##AK292169|KIAA0020|9933|KIAA0020##AK310956|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##AK289540|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##BC022191|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_002919|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_134428|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)	0.0	0.0	
chr11	130021049	130021229	reg1004653.p2	7.777	+	TSC_hg19_v1_chr11_+_129991591 L23113	-29511	+	L23114 TSC_hg19_v1_chr11_+_129979349	-41800	+	AK128162 NM_001243299	-80677	+	TSC_hg19_v1_chr11_+_130029676 NM_021978	8538	+	AK314173 TSC_hg19_v1_chr11_+_130029706	8565	+	TSC_hg19_v1_chr11_+_130029713 BC030532	8602	+	L23113|APLP2|334|amyloid beta (A4) precursor-like protein 2##L23114|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK128162|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001243299|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_021978|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AK314173|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##BC030532|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)	0.0	0.0	
chr10	70480633	70480804	reg1003776.p1	7.776	+	TSC_hg19_v1_chr10_+_70320093 NM_030625	-160635	+	TSC_hg19_v1_chr10_-_70287249 NM_152707	-193449	-	CU688872 DQ891710 DQ894887 TSC_hg19_v1_chr10_-_70287246 AK298510 M31659 AK290255 BC030266 AK295287	-193529	-	TSC_hg19_v1_chr10_+_70480995 AF465616 AK023438 NM_018237 AK307550 AK298004 BC058846 AK001701 AY249140 AK122871 AK292649 AK299307 AK307704 AK307671 BX647943 BC130626 BC132725 BC144118 BC108682	265	+	BC026036 BC089420 TSC_hg19_v1_chr10_+_70482298	1545	+	TSC_hg19_v1_chr10_+_70502264 AK000741	21560	+	NM_030625|TET1|80312|tet methylcytosine dioxygenase 1##NM_152707|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##DQ891710|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##DQ894887|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##AK298510|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##M31659|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##AK290255|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##BC030266|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##AK295287|SLC25A16|8034|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16##AF465616|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK023438|CCAR1|55749|cell division cycle and apoptosis regulator 1##NM_018237|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK307550|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK298004|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC058846|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK001701|CCAR1|55749|cell division cycle and apoptosis regulator 1##AY249140|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK122871|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK292649|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK299307|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK307704|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK307671|CCAR1|55749|cell division cycle and apoptosis regulator 1##BX647943|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC130626|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC132725|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC144118|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC108682|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC026036|CCAR1|55749|cell division cycle and apoptosis regulator 1##BC089420|CCAR1|55749|cell division cycle and apoptosis regulator 1##AK000741|CCAR1|55749|cell division cycle and apoptosis regulator 1	0.0	0.0	
chr14	24777357	24777471	reg1003504.p1	7.776	+	TSC_hg19_v1_chr14_-_24777184 BC035970	-228	-	AF544398 TSC_hg19_v1_chr14_-_24777163	-246	-	AK000387 TSC_hg19_v1_chr14_-_24777155	-260	-	NM_001164692 NM_019839 AK304169 BC038437 AB032558	1959	+	TSC_hg19_v1_chr14_-_24780610 NM_014430 BC000982 AF190901	3178	-	TSC_hg19_v1_chr14_-_24780632 BC050376	3217	-	BC035970|CIDEB|27141|cell death-inducing DFFA-like effector b##AF544398|CIDEB|27141|cell death-inducing DFFA-like effector b##AK000387|CIDEB|27141|cell death-inducing DFFA-like effector b##NM_001164692|LTB4R2|56413|leukotriene B4 receptor 2##NM_019839|LTB4R2|56413|leukotriene B4 receptor 2##AK304169|LTB4R2|56413|leukotriene B4 receptor 2##BC038437|LTB4R2|56413|leukotriene B4 receptor 2##AB032558|LTB4R2|56413|leukotriene B4 receptor 2##NM_014430|CIDEB|27141|cell death-inducing DFFA-like effector b##BC000982|CIDEB|27141|cell death-inducing DFFA-like effector b##AF190901|CIDEB|27141|cell death-inducing DFFA-like effector b	0.055234	0.995389	CTCF.p2:72:0.995
chr22	31742368	31742466	reg1002731.p1	7.776	+	TSC_hg19_v1_chr22_-_31742333 BC051357	-83	-	AF254082 AF254083 AF254084 AF254085 AF119256 NM_014323 NM_032050 NM_032051 NM_032052 TSC_hg19_v1_chr22_-_31742310 AB208787	-152	-	AK291803 TSC_hg19_v1_chr22_-_31741928 BC021091	-552	-	TSC_hg19_v1_chr22_+_31742744 BC004550 CR456348 AK000471 CU013058 CU013346	413	+	NM_004147 TSC_hg19_v1_chr22_+_31795576	53140	+	TSC_hg19_v1_chr22_+_31795589 AK315659 BC019285 AJ005940 BC020803 AF078103 AK098576 CR456488 DQ890690 DQ893872 CU013048 CU013336 CU676724 AB463011 BT007237 CR542059	53208	+	BC051357|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AF254082|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AF254083|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AF254084|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AF254085|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AF119256|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##NM_014323|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##NM_032050|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##NM_032051|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##NM_032052|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AB208787|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##AK291803|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##BC021091|PATZ1|23598|POZ (BTB) and AT hook containing zinc finger 1##BC004550|FLJ20464|54944|uncharacterized protein FLJ20464##CR456348|FLJ20464|54944|uncharacterized protein FLJ20464##AK000471|FLJ20464|54944|uncharacterized protein FLJ20464##NM_004147|DRG1|4733|developmentally regulated GTP binding protein 1##AK315659|DRG1|4733|developmentally regulated GTP binding protein 1##BC019285|DRG1|4733|developmentally regulated GTP binding protein 1##AJ005940|DRG1|4733|developmentally regulated GTP binding protein 1##BC020803|DRG1|4733|developmentally regulated GTP binding protein 1##AF078103|DRG1|4733|developmentally regulated GTP binding protein 1##AK098576|DRG1|4733|developmentally regulated GTP binding protein 1##CR456488|DRG1|4733|developmentally regulated GTP binding protein 1##DQ890690|DRG1|4733|developmentally regulated GTP binding protein 1##DQ893872|DRG1|4733|developmentally regulated GTP binding protein 1##CU013048|DRG1|4733|developmentally regulated GTP binding protein 1##CU013336|DRG1|4733|developmentally regulated GTP binding protein 1##BT007237|DRG1|4733|developmentally regulated GTP binding protein 1##CR542059|DRG1|4733|developmentally regulated GTP binding protein 1	0.475819	0.0	denovo_WM_7:8:0.437
chr2	65528074	65528221	reg1004154.p1	7.776	+	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-73212	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-73411	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-170806	-	TSC_hg19_v1_chr2_-_65593766 AK299079	65626	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	65751	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	131065	-	NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2	0.998181	0.0	denovo_WM_7:-1:0.951
chr8	8182316	8182468	reg1005292.p1	7.776	+	TSC_hg19_v1_chr8_-_8175862 AF075060	-6504	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-96250	+	AK292586 NM_001193630	-398534	+	AK122582 NM_001080826	56830	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	377306	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	568546	-	AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1	0.02457	0.0	
chr9	134594818	134594998	reg1003487.p1	7.776	+	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	-9706	-	AK057848 TSC_hg19_v1_chr9_-_134406625 BC091495 BC015547 AK022317 NM_001135954 NM_031432	-188258	-	TSC_hg19_v1_chr9_-_134406578 AF254133 CR457281 CU677347 AF237290 AF125106 AK295471 AK307475	-188361	-	D21239 NM_005312	18016	-	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	20382	-	Z36848 AF104252 AF230382 DQ099387 AB527898 EU446747 TSC_hg19_v1_chr9_-_134955238 BC064608 BC070331	360241	-	BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##AK057848|UCK1|83549|uridine-cytidine kinase 1##BC091495|UCK1|83549|uridine-cytidine kinase 1##BC015547|UCK1|83549|uridine-cytidine kinase 1##AK022317|UCK1|83549|uridine-cytidine kinase 1##NM_001135954|UCK1|83549|uridine-cytidine kinase 1##NM_031432|UCK1|83549|uridine-cytidine kinase 1##AF254133|UCK1|83549|uridine-cytidine kinase 1##CR457281|UCK1|83549|uridine-cytidine kinase 1##AF237290|UCK1|83549|uridine-cytidine kinase 1##AF125106|UCK1|83549|uridine-cytidine kinase 1##AK295471|UCK1|83549|uridine-cytidine kinase 1##AK307475|UCK1|83549|uridine-cytidine kinase 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##Z36848|MED27|9442|mediator complex subunit 27##AF104252|MED27|9442|mediator complex subunit 27##AF230382|MED27|9442|mediator complex subunit 27##DQ099387|MED27|9442|mediator complex subunit 27##EU446747|MED27|9442|mediator complex subunit 27##BC064608|MED27|9442|mediator complex subunit 27##BC070331|MED27|9442|mediator complex subunit 27	0.999707	0.0	
chr5	32173379	32173548	reg1004404.p2	7.774	+	NM_178140	-374433	+	TSC_hg19_v1_chr5_+_31639424 AB002298	-533993	+	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	-641028	+	TSC_hg19_v1_chr5_+_32173523 AK055939	53	+	TSC_hg19_v1_chr5_-_32174291 AJ296152	805	-	TSC_hg19_v1_chr5_-_32174327 BC063586	877	-	NM_178140|PDZD2|23037|PDZ domain containing 2##AB002298|PDZD2|23037|PDZ domain containing 2##NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AK055939|LOC153546|153546|uncharacterized LOC153546##AJ296152|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##BC063586|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)	0.982401	0.0	denovo_WM_7:-7:0.637	denovo_WM_7:-9:0.257
chr6	42018091	42018200	reg1003893.p2	7.773	+	NM_001136017 NM_001136126	-1536	-	TSC_hg19_v1_chr6_-_42016453 AK303452 AB209825 AK057206 AK097856	-1727	-	AB385206 CR542246 DQ891748 DQ895130 BC011616 M90814 TSC_hg19_v1_chr6_-_41909544 AK315421 AK299187 M92287 NM_001136125 NM_001760	-108646	-	BC033728 NM_138572 TSC_hg19_v1_chr6_+_42018261 AK057383 BC119678 BC119679 AL833401	111	+	TSC_hg19_v1_chr6_+_42018268 BC018796 AF465841 CU689710	126	+	NM_001164446	92569	-	NM_001136017|CCND3|896|cyclin D3##NM_001136126|CCND3|896|cyclin D3##AK303452|CCND3|896|cyclin D3##AB209825|CCND3|896|cyclin D3##AK057206|CCND3|896|cyclin D3##AK097856|CCND3|896|cyclin D3##CR542246|CCND3|896|cyclin D3##DQ891748|CCND3|896|cyclin D3##DQ895130|CCND3|896|cyclin D3##BC011616|CCND3|896|cyclin D3##M90814|CCND3|896|cyclin D3##AK315421|CCND3|896|cyclin D3##AK299187|CCND3|896|cyclin D3##M92287|CCND3|896|cyclin D3##NM_001136125|CCND3|896|cyclin D3##NM_001760|CCND3|896|cyclin D3##BC033728|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##NM_138572|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AK057383|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119678|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119679|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AL833401|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC018796|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AF465841|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##NM_001164446|C6orf132|647024|chromosome 6 open reading frame 132	0.998966	0.0	denovo_WM_7:-16:0.314	denovo_WM_7:-17:0.314	denovo_WM_7:-18:0.314
chr5	126302496	126302660	reg1003319.p1	7.771	+	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-189454	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-189696	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	-189747	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	63597	-	NM_178450	63861	-	AK126569 NM_001164478 NM_001164479	106599	-	DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63	2.010454	0.0	
chr9	114119106	114119258	reg1003816.p1	7.771	+	BC111086 NM_205859	-28470	-	TSC_hg19_v1_chr9_-_113801481 AK290287	-317680	-	AK298590 TSC_hg19_v1_chr9_-_113801086	-318149	-	TSC_hg19_v1_chr9_-_114245830 AK308313	126646	-	TSC_hg19_v1_chr9_-_114246233 AK122712	127083	-	NM_001080398	127842	-	BC111086|OR2K2|26248|olfactory receptor, family 2, subfamily K, member 2##NM_205859|OR2K2|26248|olfactory receptor, family 2, subfamily K, member 2##AK290287|LPAR1|1902|lysophosphatidic acid receptor 1##AK298590|LPAR1|1902|lysophosphatidic acid receptor 1##AK308313|KIAA0368|23392|KIAA0368##AK122712|KIAA0368|23392|KIAA0368##NM_001080398|KIAA0368|23392|KIAA0368	0.995286	0.0	
chr16	74805772	74805930	reg1004198.p1	7.770	+	BC028141 AK091708 AX747141 NM_001142497 NM_152649	-71114	-	TSC_hg19_v1_chr16_-_74700775 NM_018124	-105074	-	TSC_hg19_v1_chr16_-_74700758 AK291200	-105099	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	2734	-	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	2873	-	CU678744 TSC_hg19_v1_chr16_-_75018978 BC004519	213108	-	BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##NM_018124|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase##BC004519|WDR59|79726|WD repeat domain 59	0.996977	0.0	denovo_WM_7:7:0.424	denovo_WM_7:8:0.424
chr12	90496818	90496998	reg1003516.p2	7.769	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-393363	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-394221	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-447057	-	BC026075 BC024183 BC027600 BC034491 NM_152638	852043	-	U59111 TSC_hg19_v1_chr12_-_91398750	901839	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	901871	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.0	0.816071	CTCF.p2:107:0.816
chr15	79165989	79166132	reg1004001.p1	7.769	+	TSC_hg19_v1_chr15_+_79165343 AK300789 BC067826 AB385578 CU692730 DQ892602 DQ895837 AK310181	-697	+	TSC_hg19_v1_chr15_+_79165314 AK310702 BC141840 AF070664 AF167173 AK310592 AL137697 AF109188 AF161546	-741	+	TSC_hg19_v1_chr15_+_79165283 AK098485 AF218011 AF100615 AY148481 AK296650 BC002936 BC022845	-813	+	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	71275	-	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	71339	-	NM_153815 S62035	131941	-	AK300789|MORF4L1|10933|mortality factor 4 like 1##BC067826|MORF4L1|10933|mortality factor 4 like 1##DQ892602|MORF4L1|10933|mortality factor 4 like 1##DQ895837|MORF4L1|10933|mortality factor 4 like 1##AK310181|MORF4L1|10933|mortality factor 4 like 1##AK310702|MORF4L1|10933|mortality factor 4 like 1##BC141840|MORF4L1|10933|mortality factor 4 like 1##AF070664|MORF4L1|10933|mortality factor 4 like 1##AF167173|MORF4L1|10933|mortality factor 4 like 1##AK310592|MORF4L1|10933|mortality factor 4 like 1##AL137697|MORF4L1|10933|mortality factor 4 like 1##AF109188|MORF4L1|10933|mortality factor 4 like 1##AF161546|MORF4L1|10933|mortality factor 4 like 1##AK098485|MORF4L1|10933|mortality factor 4 like 1##AF218011|MORF4L1|10933|mortality factor 4 like 1##AF100615|MORF4L1|10933|mortality factor 4 like 1##AY148481|MORF4L1|10933|mortality factor 4 like 1##AK296650|MORF4L1|10933|mortality factor 4 like 1##BC002936|MORF4L1|10933|mortality factor 4 like 1##BC022845|MORF4L1|10933|mortality factor 4 like 1##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1	0.235081	0.0	
chr16	57643832	57643987	reg1004161.p2	7.769	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	-67321	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	-67355	+	BC008285 BC009941 NM_033212	-73444	-	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	9746	+	NM_001145770 NM_005682 AK075270 AY358400	10039	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	18545	+	BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56##NM_001145770|GPR56|9289|G protein-coupled receptor 56##NM_005682|GPR56|9289|G protein-coupled receptor 56##AK075270|GPR56|9289|G protein-coupled receptor 56##AY358400|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56	0.765147	0.0	denovo_WM_7:-9:0.629
chr4	77993691	77993846	reg1002293.p1	7.769	+	AK124592 CR627457 TSC_hg19_v1_chr4_+_77954068	-39763	+	TSC_hg19_v1_chr4_+_77871005 AK001711 AL110300 AK302700 BC063615 GU727629 AB587498	-122768	+	TSC_hg19_v1_chr4_+_77870908 BC064934	-122856	+	TSC_hg19_v1_chr4_-_77997145 BC000420 BC004975 NM_006835 AB209766 AK301111 AK312632	3384	-	TSC_hg19_v1_chr4_+_78078359 NM_004354 AK292029 BC032518	84593	+	TSC_hg19_v1_chr4_+_78078398 U47414	84692	+	AK124592|SEPT11|55752|septin 11##AK001711|SEPT11|55752|septin 11##AL110300|SEPT11|55752|septin 11##AK302700|SEPT11|55752|septin 11##BC063615|SEPT11|55752|septin 11##GU727629|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11##BC000420|CCNI|10983|cyclin I##BC004975|CCNI|10983|cyclin I##NM_006835|CCNI|10983|cyclin I##AB209766|CCNI|10983|cyclin I##AK301111|CCNI|10983|cyclin I##AK312632|CCNI|10983|cyclin I##NM_004354|CCNG2|901|cyclin G2##AK292029|CCNG2|901|cyclin G2##BC032518|CCNG2|901|cyclin G2##U47414|CCNG2|901|cyclin G2	1.597536	0.0	denovo_WM_7:29:0.229	denovo_WM_7:30:0.304	denovo_WM_7:45:0.246
chr6	42472953	42473052	reg1003623.p1	7.769	+	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	-53179	-	TSC_hg19_v1_chr6_-_42185603 NM_018141	-287385	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-287402	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	58748	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	58775	+	TSC_hg19_v1_chr6_+_42531956 AY061884 CU687884	59002	+	AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##AY061884|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.997822	0.0	
chr6	33285937	33286087	reg1003569.p1	7.768	+	AK315747 NM_001145338	-294	-	BC018541 NM_005453 TSC_hg19_v1_chr6_-_33285522	-497	-	TSC_hg19_v1_chr6_-_33282034 BC064966 AK297903 NM_003190 NM_172208 NM_172209	-3928	-	BC109073 BC109074 TSC_hg19_v1_chr6_-_33290737 AK309612 AB015051 AF050179 BC073776 AF039136 AK303767 AK313034 AK303854 AK223404 AK292187 NM_001141969 NM_001141970 NM_001350	4723	-	NM_002263	73300	+	TSC_hg19_v1_chr6_+_33359599 AJ010479	73575	+	AK315747|ZBTB22|9278|zinc finger and BTB domain containing 22##NM_001145338|ZBTB22|9278|zinc finger and BTB domain containing 22##BC018541|ZBTB22|9278|zinc finger and BTB domain containing 22##NM_005453|ZBTB22|9278|zinc finger and BTB domain containing 22##BC064966|TAPBP|6892|TAP binding protein (tapasin)##NM_003190|TAPBP|6892|TAP binding protein (tapasin)##NM_172208|TAPBP|6892|TAP binding protein (tapasin)##NM_172209|TAPBP|6892|TAP binding protein (tapasin)##BC109073|DAXX|1616|death-domain associated protein##BC109074|DAXX|1616|death-domain associated protein##AK309612|DAXX|1616|death-domain associated protein##AF050179|DAXX|1616|death-domain associated protein##BC073776|DAXX|1616|death-domain associated protein##AF039136|DAXX|1616|death-domain associated protein##AK303767|DAXX|1616|death-domain associated protein##AK313034|DAXX|1616|death-domain associated protein##AK303854|DAXX|1616|death-domain associated protein##AK223404|DAXX|1616|death-domain associated protein##AK292187|DAXX|1616|death-domain associated protein##NM_001141969|DAXX|1616|death-domain associated protein##NM_001141970|DAXX|1616|death-domain associated protein##NM_001350|DAXX|1616|death-domain associated protein##NM_002263|KIFC1|3833|kinesin family member C1##AJ010479|KIFC1|3833|kinesin family member C1	1.029796	0.0	denovo_WM_7:-21:0.527	denovo_WM_7:-22:0.470
chr13	52534048	52534178	reg1004025.p1	7.767	+	AK098719 NM_031290 AK225745 AL136887 BC069691 BC069748 BC069770 BC069806	-97919	+	BC026024 BC009825 NM_001031719 TSC_hg19_v1_chr13_-_52378300 AK023701 NM_024705	-155838	-	TSC_hg19_v1_chr13_+_52158648 AF411978 CU680736	-375378	+	DQ015922 U03464 BC143974 BC143973 BC117200 BC143975 BC143976 NM_000053 NM_001005918 NM_001243182 U11700	51437	-	TSC_hg19_v1_chr13_+_52586546 NM_001004127 BC142998 AK296747 AK092428 AX747540 BC108677 BC111022 AK025456 BC143059 BC150316	52422	+	BC073862 D87455 NM_021645	64639	+	AK098719|CCDC70|83446|coiled-coil domain containing 70##NM_031290|CCDC70|83446|coiled-coil domain containing 70##AK225745|CCDC70|83446|coiled-coil domain containing 70##AL136887|CCDC70|83446|coiled-coil domain containing 70##BC069691|CCDC70|83446|coiled-coil domain containing 70##BC069748|CCDC70|83446|coiled-coil domain containing 70##BC069770|CCDC70|83446|coiled-coil domain containing 70##BC069806|CCDC70|83446|coiled-coil domain containing 70##BC026024|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##BC009825|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001031719|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK023701|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_024705|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AF411978|WDFY2|115825|WD repeat and FYVE domain containing 2##DQ015922|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U03464|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143974|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143973|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC117200|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143975|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143976|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_000053|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001005918|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001243182|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U11700|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001004127|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC142998|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK296747|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC108677|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC111022|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK025456|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC143059|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC150316|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC073862|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##D87455|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)##NM_021645|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)	0.040696	0.173827	
chr20	62413420	62413564	reg1004643.p1	7.767	+	TSC_hg19_v1_chr20_+_62372460 AK298304 BC017446	-40972	+	TSC_hg19_v1_chr20_+_62371761 AB044786 BC001402	-41739	+	TSC_hg19_v1_chr20_+_62371629 AB044777	-41854	+	AK131482 NM_025224	23363	-	TSC_hg19_v1_chr20_-_62462618 BC052269 BC073800	49105	-	NM_080622	79073	+	AK298304|SLC2A4RG|56731|SLC2A4 regulator##BC017446|SLC2A4RG|56731|SLC2A4 regulator##AB044786|SLC2A4RG|56731|SLC2A4 regulator##BC001402|SLC2A4RG|56731|SLC2A4 regulator##AB044777|SLC2A4RG|56731|SLC2A4 regulator##AK131482|ZBTB46|140685|zinc finger and BTB domain containing 46##NM_025224|ZBTB46|140685|zinc finger and BTB domain containing 46##BC052269|ZBTB46|140685|zinc finger and BTB domain containing 46##BC073800|ZBTB46|140685|zinc finger and BTB domain containing 46##NM_080622|ABHD16B|140701|abhydrolase domain containing 16B	0.973623	0.943565	denovo_WM_7:-44:0.656	CTCF.p2:83:0.944
chr6	89351058	89351237	reg1003755.p1	7.767	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-475381	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-496111	-	BC029488 NM_030960 AF203447	-593617	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	322044	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	322161	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	322200	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.996279	0.0	
chr11	77342240	77342375	reg1003577.p1	7.766	+	BC040443 NM_173039 TSC_hg19_v1_chr11_+_77300718 AB028147	-41607	+	TSC_hg19_v1_chr11_-_77184767 U51120 BC050377 BC109298 BC109299 AK293098 U24152 NM_001128620 NM_002576	-157475	-	TSC_hg19_v1_chr11_-_77122998 AK296006 AK055228	-219308	-	AB590787 AF026003 BT019907 AF005422 BC119634 BC119635 TSC_hg19_v1_chr11_-_77348840 U53454 AK315259 X91788 NM_001293	6507	-	AF380176 AB527448 TSC_hg19_v1_chr11_-_77531769 BC015360 NM_016578 AK098130	189525	-	TSC_hg19_v1_chr11_+_77532238 AF092136 AK024688 BC002752 NM_024684	189896	+	BC040443|AQP11|282679|aquaporin 11##NM_173039|AQP11|282679|aquaporin 11##AB028147|AQP11|282679|aquaporin 11##U51120|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC050377|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109298|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109299|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK293098|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##U24152|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_001128620|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_002576|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK296006|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK055228|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AF026003|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BT019907|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AF005422|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119634|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119635|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##U53454|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AK315259|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##X91788|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##NM_001293|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AF380176|RSF1|51773|remodeling and spacing factor 1##BC015360|RSF1|51773|remodeling and spacing factor 1##NM_016578|RSF1|51773|remodeling and spacing factor 1##AF092136|C11orf67|28971|chromosome 11 open reading frame 67##AK024688|C11orf67|28971|chromosome 11 open reading frame 67##BC002752|C11orf67|28971|chromosome 11 open reading frame 67##NM_024684|C11orf67|28971|chromosome 11 open reading frame 67	0.999651	0.0	denovo_WM_7:69:0.425	denovo_WM_7:70:0.425
chr19	4864072	4864188	reg1003115.p2	7.766	+	TSC_hg19_v1_chr19_-_4831725 BC035331 NM_182919	-32405	-	AF070530 TSC_hg19_v1_chr19_-_4817612	-46572	-	TSC_hg19_v1_chr19_+_4791757 AK074232 BC004988 AY356352 EU446817 AB384759 AJ311359	-72318	+	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	3515	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	3535	-	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	3612	-	BC035331|TICAM1|148022|toll-like receptor adaptor molecule 1##NM_182919|TICAM1|148022|toll-like receptor adaptor molecule 1##AF070530|TICAM1|148022|toll-like receptor adaptor molecule 1##AK074232|FEM1A|55527|fem-1 homolog a (C. elegans)##BC004988|FEM1A|55527|fem-1 homolog a (C. elegans)##AY356352|FEM1A|55527|fem-1 homolog a (C. elegans)##EU446817|FEM1A|55527|fem-1 homolog a (C. elegans)##AJ311359|FEM1A|55527|fem-1 homolog a (C. elegans)##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3	0.991567	0.0	denovo_WM_7:44:0.837
chr9	93565068	93565248	reg1002572.p2	7.766	+	TSC_hg19_v1_chr9_+_93564206 NM_001174168 BC011399	-943	+	TSC_hg19_v1_chr9_+_93564100 AK290927	-1043	+	TSC_hg19_v1_chr9_+_93564079 L28824	-1080	+	NM_001174167 X73568	24575	+	TSC_hg19_v1_chr9_-_94124185 AB528075 AM393420 CU676666 DQ892036 DQ895227 X79888 AK302453	559012	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	559041	-	NM_001174168|SYK|6850|spleen tyrosine kinase##BC011399|SYK|6850|spleen tyrosine kinase##AK290927|SYK|6850|spleen tyrosine kinase##L28824|SYK|6850|spleen tyrosine kinase##NM_001174167|SYK|6850|spleen tyrosine kinase##X73568|SYK|6850|spleen tyrosine kinase##AM393420|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ892036|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ895227|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##X79888|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK302453|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase	1.812881	0.0	denovo_WM_7:-3:0.682	denovo_WM_7:-53:0.923
chr5	78320901	78321039	reg1005091.p1	7.764	+	NM_000046	-38614	-	TSC_hg19_v1_chr5_-_78281699 BC029051 NM_198709	-39244	-	TSC_hg19_v1_chr5_-_78281630 M32373	-39374	-	TSC_hg19_v1_chr5_-_78365450 AF111858 AK057641 NM_013391 AK300894 AK303873 AK314736	44479	-	NM_001178005 NM_017614 TSC_hg19_v1_chr5_+_78365558	44584	+	AF257473 TSC_hg19_v1_chr5_+_78365591 AK298298 AK315520 BC020665 DQ891370 DQ894550 AB590411 CU676622	44623	+	NM_000046|ARSB|411|arylsulfatase B##BC029051|ARSB|411|arylsulfatase B##NM_198709|ARSB|411|arylsulfatase B##M32373|ARSB|411|arylsulfatase B##AF111858|DMGDH|29958|dimethylglycine dehydrogenase##AK057641|DMGDH|29958|dimethylglycine dehydrogenase##NM_013391|DMGDH|29958|dimethylglycine dehydrogenase##AK300894|DMGDH|29958|dimethylglycine dehydrogenase##AK303873|DMGDH|29958|dimethylglycine dehydrogenase##AK314736|DMGDH|29958|dimethylglycine dehydrogenase##NM_001178005|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##NM_017614|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##AF257473|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##AK298298|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##AK315520|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##BC020665|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##DQ891370|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##DQ894550|BHMT2|23743|betaine--homocysteine S-methyltransferase 2	0.940309	0.892425	CTCF.p2:10:0.880	denovo_WM_7:-28:0.580
chr11	58345627	58345807	reg1002132.p1	7.763	+	BC034230 TSC_hg19_v1_chr11_-_58345666 AK300955 NM_001143995 AK299264	-56	-	BC007490 BC019035 TSC_hg19_v1_chr11_-_58343330 AK313306 AK223165 AK301093 AF062075 NM_004811	-2369	-	NM_001005218	-70140	-	TSC_hg19_v1_chr11_+_58346591 BC051743 NM_001197051 NM_053023	866	+	TSC_hg19_v1_chr11_+_58346697 AB056107 AB057443 CU690828	978	+	BC069167 NM_000614 BC068030 AK314118 BC074963 BC074964 CU686605 S72921	44468	+	BC034230|LPXN|9404|leupaxin##AK300955|LPXN|9404|leupaxin##NM_001143995|LPXN|9404|leupaxin##AK299264|LPXN|9404|leupaxin##BC007490|LPXN|9404|leupaxin##BC019035|LPXN|9404|leupaxin##AK313306|LPXN|9404|leupaxin##AK223165|LPXN|9404|leupaxin##AK301093|LPXN|9404|leupaxin##AF062075|LPXN|9404|leupaxin##NM_004811|LPXN|9404|leupaxin##NM_001005218|OR5B21|219968|olfactory receptor, family 5, subfamily B, member 21##BC051743|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_001197051|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_053023|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB056107|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB057443|ZFP91-CNTF|386607|ZFP91-CNTF readthrough##BC069167|CNTF|1270|ciliary neurotrophic factor##NM_000614|CNTF|1270|ciliary neurotrophic factor##BC068030|CNTF|1270|ciliary neurotrophic factor##AK314118|CNTF|1270|ciliary neurotrophic factor##BC074963|CNTF|1270|ciliary neurotrophic factor##BC074964|CNTF|1270|ciliary neurotrophic factor##S72921|CNTF|1270|ciliary neurotrophic factor	0.0	0.0	
chr5	115694676	115694808	reg1003990.p1	7.763	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-274021	+	NM_001195581	-307580	+	AK291655 BC068560 NM_173800 BC060869 AY560010 BC109022 BC109023	-396531	+	TSC_hg19_v1_chr5_+_115898220 D28352	203482	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	215772	-	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2629496	-	AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##NM_001195581|LOC644100|644100|uncharacterized LOC644100##AK291655|AQPEP|206338|laeverin##BC068560|AQPEP|206338|laeverin##NM_173800|AQPEP|206338|laeverin##BC060869|AQPEP|206338|laeverin##AY560010|AQPEP|206338|laeverin##BC109022|AQPEP|206338|laeverin##BC109023|AQPEP|206338|laeverin##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2	0.0	0.0	
chr19	2239316	2239454	reg1004203.p1	7.762	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-2547	+	TSC_hg19_v1_chr19_-_2236650 AK098725	-2730	-	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	-3096	-	NM_000479	9727	+	AK056978 NM_144616	17033	-	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	30135	+	NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK098725|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_000479|AMH|268|anti-Mullerian hormone##AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B	0.992498	0.0	
chr6	21925789	21925929	reg1005597.p1	7.762	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-259200	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-331487	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1391136	+	BC015850 NM_000948	371870	-	X54394 X54393 GQ305133 M58594 NM_001163558	377188	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	643866	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	0.986789	0.0	denovo_WM_7:25:0.987
chr2	12172725	12172872	reg1003894.p2	7.760	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-286023	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-362507	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-489955	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	684455	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	685118	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	685599	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.794478	0.0	denovo_WM_7:-6:0.781
chr1	170658760	170658883	reg1004307.p1	7.759	+	BC074993 NM_006902 NM_022716 EU446648 AB527492 AB451463 TSC_hg19_v1_chr1_+_170633380 M95929	-25459	+	TSC_hg19_v1_chr1_+_170632302 AK225968	-26531	+	TSC_hg19_v1_chr1_+_170501309 AK308339 NM_001146039 NM_152281 AK021814 BC064945 CU687974 BC047476 AK057661	-157518	+	NM_001163629 NM_025063 AK027203 BC113390 BC113392	245826	+	NM_001002294 NM_006894 AK223166 TSC_hg19_v1_chr1_+_171060044 AK298406 Z47552 AK298456 AK296105 AK310785 AK313197 BC032016	401220	+	NM_001460 AK304385 AK312877 BC005894 Y09267 AL833218	495601	+	BC074993|PRRX1|5396|paired related homeobox 1##NM_006902|PRRX1|5396|paired related homeobox 1##NM_022716|PRRX1|5396|paired related homeobox 1##EU446648|PRRX1|5396|paired related homeobox 1##AB451463|PRRX1|5396|paired related homeobox 1##AK225968|PRRX1|5396|paired related homeobox 1##AK308339|GORAB|92344|golgin, RAB6-interacting##NM_001146039|GORAB|92344|golgin, RAB6-interacting##NM_152281|GORAB|92344|golgin, RAB6-interacting##AK021814|GORAB|92344|golgin, RAB6-interacting##BC064945|GORAB|92344|golgin, RAB6-interacting##BC047476|GORAB|92344|golgin, RAB6-interacting##AK057661|GORAB|92344|golgin, RAB6-interacting##NM_001163629|C1orf129|80133|chromosome 1 open reading frame 129##NM_025063|C1orf129|80133|chromosome 1 open reading frame 129##AK027203|C1orf129|80133|chromosome 1 open reading frame 129##BC113390|C1orf129|80133|chromosome 1 open reading frame 129##BC113392|C1orf129|80133|chromosome 1 open reading frame 129##NM_001002294|FMO3|2328|flavin containing monooxygenase 3##NM_006894|FMO3|2328|flavin containing monooxygenase 3##AK223166|FMO3|2328|flavin containing monooxygenase 3##AK298406|FMO3|2328|flavin containing monooxygenase 3##Z47552|FMO3|2328|flavin containing monooxygenase 3##AK296105|FMO3|2328|flavin containing monooxygenase 3##AK310785|FMO3|2328|flavin containing monooxygenase 3##AK313197|FMO3|2328|flavin containing monooxygenase 3##BC032016|FMO3|2328|flavin containing monooxygenase 3##NM_001460|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AK304385|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AK312877|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##BC005894|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##Y09267|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AL833218|FMO2|2327|flavin containing monooxygenase 2 (non-functional)	0.857712	0.741226	CTCF.p2:31:0.741	denovo_WM_7:-70:0.817
chr6_mcf_hap5	4759683	4759830	reg1003497.p1	7.759	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.029796	0.0	denovo_WM_7:-23:0.527	denovo_WM_7:-24:0.470
chr2	202306322	202306439	reg1004829.p1	7.758	+	AK124115 BC031603 NM_001127391 NM_139163 AK292283	-84287	-	NM_033356 X98173	-181124	+	NM_001080125 AF422926 BC068050 AF422925 AF422929 X98172 AY429525	-183583	+	TSC_hg19_v1_chr2_-_202316179 AK314384 AK054763	9767	-	TSC_hg19_v1_chr2_-_202316274 AB038951 BC040668 BC041330 BC048093 NM_015049 AL832573	9908	-	AK027637 NM_001206864 NM_018571 TSC_hg19_v1_chr2_+_202316442 AK290457 BC008302 AY093697 AB038950 BC090871	10092	+	AK124115|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##BC031603|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_001127391|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_139163|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##AK292283|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_033356|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98173|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001080125|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422926|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC068050|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422929|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98172|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK314384|TRAK2|66008|trafficking protein, kinesin binding 2##AK054763|TRAK2|66008|trafficking protein, kinesin binding 2##AB038951|TRAK2|66008|trafficking protein, kinesin binding 2##BC040668|TRAK2|66008|trafficking protein, kinesin binding 2##BC041330|TRAK2|66008|trafficking protein, kinesin binding 2##BC048093|TRAK2|66008|trafficking protein, kinesin binding 2##NM_015049|TRAK2|66008|trafficking protein, kinesin binding 2##AL832573|TRAK2|66008|trafficking protein, kinesin binding 2##AK027637|STRADB|55437|STE20-related kinase adaptor beta##NM_001206864|STRADB|55437|STE20-related kinase adaptor beta##NM_018571|STRADB|55437|STE20-related kinase adaptor beta##AK290457|STRADB|55437|STE20-related kinase adaptor beta##BC008302|STRADB|55437|STE20-related kinase adaptor beta##AY093697|STRADB|55437|STE20-related kinase adaptor beta##AB038950|STRADB|55437|STE20-related kinase adaptor beta##BC090871|STRADB|55437|STE20-related kinase adaptor beta	0.988528	0.0	denovo_WM_7:31:0.462	denovo_WM_7:32:0.412
chr1	16161034	16161214	reg1000460.p2	7.755	+	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-26932	-	NM_001024216 AB463637 DQ891730 DQ894907 AY180161	-69656	+	AF459643 NM_001024215 AK027444	-70113	+	BC012991 TSC_hg19_v1_chr1_-_16161389	210	-	TSC_hg19_v1_chr1_-_16162350 AK094772	1232	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	13255	+	NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##NM_001024216|FBLIM1|54751|filamin binding LIM protein 1##DQ891730|FBLIM1|54751|filamin binding LIM protein 1##DQ894907|FBLIM1|54751|filamin binding LIM protein 1##AY180161|FBLIM1|54751|filamin binding LIM protein 1##AF459643|FBLIM1|54751|filamin binding LIM protein 1##NM_001024215|FBLIM1|54751|filamin binding LIM protein 1##AK027444|FBLIM1|54751|filamin binding LIM protein 1##AK094772|FLJ37453|729614|uncharacterized LOC729614##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)	0.0	0.0	
chr13	28167595	28167733	reg1004813.p1	7.755	+	AF265440 TSC_hg19_v1_chr13_-_28024702 BC046166 NM_001166263 NM_152912	-142942	-	TSC_hg19_v1_chr13_-_28024327 BC039599 NM_001166262 NM_001166261	-143355	-	BC143711 D32257 NM_002097 TSC_hg19_v1_chr13_+_27998761 AB590496 U14134 U20272	-168893	+	BC036755 TSC_hg19_v1_chr13_-_28194667	26940	-	TSC_hg19_v1_chr13_-_28194723 AK313394 NM_153371	27063	-	TSC_hg19_v1_chr13_+_28194948 NM_001206559 AK307356	27301	+	BC046166|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166263|MTIF3|219402|mitochondrial translational initiation factor 3##NM_152912|MTIF3|219402|mitochondrial translational initiation factor 3##BC039599|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166262|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166261|MTIF3|219402|mitochondrial translational initiation factor 3##BC143711|GTF3A|2971|general transcription factor IIIA##D32257|GTF3A|2971|general transcription factor IIIA##NM_002097|GTF3A|2971|general transcription factor IIIA##U14134|GTF3A|2971|general transcription factor IIIA##U20272|GTF3A|2971|general transcription factor IIIA##BC036755|LNX2|222484|ligand of numb-protein X 2##AK313394|LNX2|222484|ligand of numb-protein X 2##NM_153371|LNX2|222484|ligand of numb-protein X 2##NM_001206559|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##AK307356|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa	0.999494	0.0	
chr20	14701102	14701260	reg1004366.p2	7.755	+	AB040902 AF169677 TSC_hg19_v1_chr20_-_14318278 BC020870 AK027297 AK074883 NM_013281 NM_198391	-382925	-	TSC_hg19_v1_chr20_+_13976263 BC101216 BC101217 BC101218 BC101219 BC126936 BC128036 EF159161	-724845	+	AK131348 TSC_hg19_v1_chr20_+_13976161 NM_080676	-725075	+	BC018687 NM_001033087	476322	+	TSC_hg19_v1_chr20_-_16553995 AB385485 CU690726 AK307399 AB046810 BC150261 BX647572 AK095322 AY166853 BC050577 NM_001199865 NM_001199866 NM_024704	1852832	-	NM_003092 NM_198220 TSC_hg19_v1_chr20_+_16710679 BC018022 BC036737 AK313004 BC022311 BC008311 M15841	2009482	+	AB040902|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AF169677|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC020870|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK027297|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK074883|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_013281|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_198391|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC101216|MACROD2|140733|MACRO domain containing 2##BC101217|MACROD2|140733|MACRO domain containing 2##BC101218|MACROD2|140733|MACRO domain containing 2##BC101219|MACROD2|140733|MACRO domain containing 2##BC126936|MACROD2|140733|MACRO domain containing 2##BC128036|MACROD2|140733|MACRO domain containing 2##EF159161|MACROD2|140733|MACRO domain containing 2##AK131348|MACROD2|140733|MACRO domain containing 2##NM_080676|MACROD2|140733|MACRO domain containing 2##BC018687|MACROD2|140733|MACRO domain containing 2##NM_001033087|MACROD2|140733|MACRO domain containing 2##AK307399|KIF16B|55614|kinesin family member 16B##AB046810|KIF16B|55614|kinesin family member 16B##BC150261|KIF16B|55614|kinesin family member 16B##BX647572|KIF16B|55614|kinesin family member 16B##AK095322|KIF16B|55614|kinesin family member 16B##AY166853|KIF16B|55614|kinesin family member 16B##BC050577|KIF16B|55614|kinesin family member 16B##NM_001199865|KIF16B|55614|kinesin family member 16B##NM_001199866|KIF16B|55614|kinesin family member 16B##NM_024704|KIF16B|55614|kinesin family member 16B##NM_003092|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##NM_198220|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC018022|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC036737|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##AK313004|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC022311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC008311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##M15841|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B	1.997285	0.0	denovo_WM_7:9:0.310	denovo_WM_7:10:0.248	denovo_WM_7:27:0.259	denovo_WM_7:28:0.321
chr14	71121291	71121471	reg1004212.p1	7.754	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-12772	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-54004	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-54021	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	154428	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	252752	+	TSC_hg19_v1_chr14_+_71374441 BC140784	253070	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	1.990504	0.0	denovo_WM_7:-48:0.283	denovo_WM_7:-49:0.236	denovo_WM_7:-67:0.237	denovo_WM_7:-68:0.284
chr15	62339614	62339756	reg1004782.p1	7.754	+	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	-818188	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	-818261	-	U04899 U04898 NM_002943 NM_134260	-1420000	-	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	12929	-	NM_207322 AF504646	19503	+	NM_001007595	117796	-	NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_207322|C2CD4A|145741|C2 calcium-dependent domain containing 4A##AF504646|C2CD4A|145741|C2 calcium-dependent domain containing 4A##NM_001007595|C2CD4B|388125|C2 calcium-dependent domain containing 4B	0.996667	0.0	denovo_WM_7:-40:0.621
chr5	138839607	138839768	reg1004352.p2	7.754	+	NM_152686 TSC_hg19_v1_chr5_-_138775215	-64472	-	AK308138 TSC_hg19_v1_chr5_-_138775199	-64493	-	BC030162 TSC_hg19_v1_chr5_-_138775145 AK024054	-64536	-	AK304726 BC146912 BC146913 DQ462572 NM_001077693 EU025066 TSC_hg19_v1_chr5_-_138842329	2623	-	TSC_hg19_v1_chr5_-_138862306 AK095896 AX775913 BC047779 AK290661	22585	-	NM_198282 TSC_hg19_v1_chr5_-_138862344	22656	-	NM_152686|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##AK308138|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##BC030162|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##BC146912|ECSCR|641700|endothelial cell-specific chemotaxis regulator##BC146913|ECSCR|641700|endothelial cell-specific chemotaxis regulator##DQ462572|ECSCR|641700|endothelial cell-specific chemotaxis regulator##NM_001077693|ECSCR|641700|endothelial cell-specific chemotaxis regulator##EU025066|ECSCR|641700|endothelial cell-specific chemotaxis regulator##AK095896|TMEM173|340061|transmembrane protein 173##AX775913|TMEM173|340061|transmembrane protein 173##BC047779|TMEM173|340061|transmembrane protein 173##AK290661|TMEM173|340061|transmembrane protein 173##NM_198282|TMEM173|340061|transmembrane protein 173	0.991906	0.0	denovo_WM_7:33:0.321	denovo_WM_7:36:0.507
chr5	158511134	158511270	reg1004128.p1	7.754	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1225112	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1326822	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1340462	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	15255	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	15540	-	AK304228 NM_001199382	123446	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.76415	0.0	denovo_WM_7:-19:0.205	denovo_WM_7:-21:0.487
chr14	73944449	73944604	reg1004556.p1	7.753	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-19235	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-19259	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-19294	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	13099	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	13137	+	TSC_hg19_v1_chr14_+_73957674 AY390535	13147	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.0	0.0	
chr12	14306640	14306786	reg1003935.p1	7.752	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-173727	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-956984	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-956996	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	211922	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	231559	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	413896	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	1.986348	0.0	denovo_WM_7:-31:0.826	denovo_WM_7:54:0.706
chr14	70690258	70690352	reg1003275.p1	7.752	+	BC036783 BX248763 TSC_hg19_v1_chr14_-_70655669 AF510501 AF510502 AF510503 NM_033262 NM_058240 NM_182932 NM_183002	-34618	-	AK096553 AJ745101 AJ745102 BC114217 NM_182936 AK122728 BC142969 NM_001130417	-143413	-	NM_001034852 NM_022137 TSC_hg19_v1_chr14_+_70346132 AK289988 AK313063 AJ249900 BC011548 BC008608	-344176	+	CR457199 AB528661 CU674840 BC001702 TSC_hg19_v1_chr14_-_70826389	136041	-	AF151037 AK290743 TSC_hg19_v1_chr14_-_70826395 AX810696 FJ460510 FJ460511 NM_001204090 NM_016468	136115	-	AB527912 TSC_hg19_v1_chr14_-_70883770 BC007704 AK002133 AK311719 NM_001202547 NM_001202548 NM_001202549 NM_018373	193451	-	BC036783|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##BX248763|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AF510501|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AF510502|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AF510503|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_033262|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_058240|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_182932|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_183002|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AK096553|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AJ745101|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AJ745102|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##BC114217|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_182936|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AK122728|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##BC142969|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_001130417|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_001034852|SMOC1|64093|SPARC related modular calcium binding 1##NM_022137|SMOC1|64093|SPARC related modular calcium binding 1##AK289988|SMOC1|64093|SPARC related modular calcium binding 1##AK313063|SMOC1|64093|SPARC related modular calcium binding 1##AJ249900|SMOC1|64093|SPARC related modular calcium binding 1##BC011548|SMOC1|64093|SPARC related modular calcium binding 1##BC008608|SMOC1|64093|SPARC related modular calcium binding 1##CR457199|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC001702|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##AF151037|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK290743|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##FJ460510|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##FJ460511|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_001204090|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_016468|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC007704|SYNJ2BP|55333|synaptojanin 2 binding protein##AK002133|SYNJ2BP|55333|synaptojanin 2 binding protein##AK311719|SYNJ2BP|55333|synaptojanin 2 binding protein##NM_001202547|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_001202548|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_001202549|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_018373|SYNJ2BP|55333|synaptojanin 2 binding protein	0.994643	0.0	
chr3	16558615	16558795	reg1003071.p1	7.752	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-3481	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-3687	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-251997	+	BX648638 AK303026 NM_001190811	87565	-	U65918 U66726 U66078 BC027595 NM_001351	88261	-	AB029015 NM_001144382	367746	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	1.793915	0.0	denovo_WM_7:72:0.384	denovo_WM_7:75:0.372	denovo_WM_7:87:0.408
chr5	333049	333229	reg1004099.p1	7.752	+	AB033060 BC151852 BC152406 EU293605 NM_001242412 NM_020731	-28849	+	AK308872 TSC_hg19_v1_chr5_+_271775 BC106706 U58773 DQ891163 DQ894344 BT020072	-61334	+	TSC_hg19_v1_chr5_+_271772 BC012384 BC050597 BC110291 AK001917	-61371	+	TSC_hg19_v1_chr5_-_443213 BC014011 BC029796 NM_138464	110091	-	TSC_hg19_v1_chr5_+_443320 AK074086 GU727644 NM_007277 BC064569	110211	+	BC045808 TSC_hg19_v1_chr5_-_473152 BC086861 BC072677 BC064928 AF370427 AK023178	139973	-	AB033060|AHRR|57491|aryl-hydrocarbon receptor repressor##BC151852|AHRR|57491|aryl-hydrocarbon receptor repressor##BC152406|AHRR|57491|aryl-hydrocarbon receptor repressor##EU293605|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_001242412|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_020731|AHRR|57491|aryl-hydrocarbon receptor repressor##AK308872|PDCD6|10016|programmed cell death 6##BC106706|PDCD6|10016|programmed cell death 6##U58773|PDCD6|10016|programmed cell death 6##DQ891163|PDCD6|10016|programmed cell death 6##DQ894344|PDCD6|10016|programmed cell death 6##BT020072|PDCD6|10016|programmed cell death 6##BC012384|PDCD6|10016|programmed cell death 6##BC050597|PDCD6|10016|programmed cell death 6##BC110291|PDCD6|10016|programmed cell death 6##AK001917|PDCD6|10016|programmed cell death 6##BC014011|C5orf55|116349|chromosome 5 open reading frame 55##BC029796|C5orf55|116349|chromosome 5 open reading frame 55##NM_138464|C5orf55|116349|chromosome 5 open reading frame 55##AK074086|EXOC3|11336|exocyst complex component 3##GU727644|EXOC3|11336|exocyst complex component 3##NM_007277|EXOC3|11336|exocyst complex component 3##BC064569|EXOC3|11336|exocyst complex component 3##BC045808|PP7080|25845|uncharacterized LOC25845##BC086861|PP7080|25845|uncharacterized LOC25845##BC072677|PP7080|25845|uncharacterized LOC25845##AF370427|PP7080|25845|uncharacterized LOC25845	0.992929	0.0	
chr6	2893226	2893348	reg1000362.p4	7.752	+	TSC_hg19_v1_chr6_-_2842202 AK304641 AK309765	-51090	-	TSC_hg19_v1_chr6_-_2842095 BC009015 NM_030666 M93056 AK298044 AK312973 AK223370 AK291327	-51205	-	TSC_hg19_v1_chr6_-_2840686 BT006928 AB590702	-52535	-	TSC_hg19_v1_chr6_-_2903544 BC002538 AB060690 L40378 AK314842 NM_004155	10221	-	AK098566 TSC_hg19_v1_chr6_-_2971511	78127	-	Z22658 TSC_hg19_v1_chr6_-_2971802 BC098564	78524	-	AK304641|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK309765|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC009015|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##NM_030666|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##M93056|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK298044|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK312973|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK223370|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK291327|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BT006928|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC002538|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AB060690|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##L40378|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK314842|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##NM_004155|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK098566|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##Z22658|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##BC098564|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6	0.999061	0.017922	denovo_WM_7:8:0.239	denovo_WM_7:9:0.239	denovo_WM_7:10:0.239	denovo_WM_7:11:0.239
chr17	63746905	63747071	reg1004704.p1	7.751	+	CR933657 TSC_hg19_v1_chr17_-_63557767	-189220	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	-189309	-	BC006295 TSC_hg19_v1_chr17_-_63556453	-190513	-	BC029524 NM_001037325	75672	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	441193	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	478537	-	CR933657|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##BC006295|AXIN2|8313|axin 2##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)	0.996653	0.0	denovo_WM_7:37:0.826
chr22	40646840	40646975	reg1003993.p2	7.750	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-72908	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-205475	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	-205998	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	95625	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	119682	+	TSC_hg19_v1_chr22_+_40766619 AK295469	119712	+	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3	0.999808	0.0	denovo_WM_7:38:0.230	denovo_WM_7:39:0.230	denovo_WM_7:40:0.230	denovo_WM_7:41:0.230
chr21	46629107	46629241	reg1004656.p2	7.749	+	TSC_hg19_v1_chr21_+_46572480 FJ169506	-56676	+	TSC_hg19_v1_chr21_+_46494502 AY082339 BC030663 NM_001112 NM_001160230 NM_015833 NM_015834 AB194369 AB194370 AB194371 AB194372 AB194373 AF525422 AF533142 AY135659 U76420 U76421 U76422 BC065545 U82120	-134591	+	TSC_hg19_v1_chr21_+_46359968 CU679303	-269205	+	TSC_hg19_v1_chr21_-_46707808 BC064623 AJ575591 AL110285 AB023175 AJ302079 AJ302080 AY066015 AK294966 AK290732 AK298080 NM_015227 NM_133635	78627	-	TSC_hg19_v1_chr21_+_46707955 BC022830 BC033767	78801	+	TSC_hg19_v1_chr21_+_46825079 AK130835 AF018082 NM_130445 BC063833	195894	+	FJ169506|ADARB1|104|adenosine deaminase, RNA-specific, B1##AY082339|ADARB1|104|adenosine deaminase, RNA-specific, B1##BC030663|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_001112|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_001160230|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_015833|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_015834|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194369|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194370|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194371|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194372|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194373|ADARB1|104|adenosine deaminase, RNA-specific, B1##AF525422|ADARB1|104|adenosine deaminase, RNA-specific, B1##AF533142|ADARB1|104|adenosine deaminase, RNA-specific, B1##AY135659|ADARB1|104|adenosine deaminase, RNA-specific, B1##U76420|ADARB1|104|adenosine deaminase, RNA-specific, B1##U76421|ADARB1|104|adenosine deaminase, RNA-specific, B1##U76422|ADARB1|104|adenosine deaminase, RNA-specific, B1##BC065545|ADARB1|104|adenosine deaminase, RNA-specific, B1##U82120|ADARB1|104|adenosine deaminase, RNA-specific, B1##BC064623|POFUT2|23275|protein O-fucosyltransferase 2##AJ575591|POFUT2|23275|protein O-fucosyltransferase 2##AL110285|POFUT2|23275|protein O-fucosyltransferase 2##AB023175|POFUT2|23275|protein O-fucosyltransferase 2##AJ302079|POFUT2|23275|protein O-fucosyltransferase 2##AJ302080|POFUT2|23275|protein O-fucosyltransferase 2##AY066015|POFUT2|23275|protein O-fucosyltransferase 2##AK294966|POFUT2|23275|protein O-fucosyltransferase 2##AK290732|POFUT2|23275|protein O-fucosyltransferase 2##AK298080|POFUT2|23275|protein O-fucosyltransferase 2##NM_015227|POFUT2|23275|protein O-fucosyltransferase 2##NM_133635|POFUT2|23275|protein O-fucosyltransferase 2##BC022830|LOC642852|642852|uncharacterized LOC642852##BC033767|LOC642852|642852|uncharacterized LOC642852##AK130835|COL18A1|80781|collagen, type XVIII, alpha 1##AF018082|COL18A1|80781|collagen, type XVIII, alpha 1##NM_130445|COL18A1|80781|collagen, type XVIII, alpha 1##BC063833|COL18A1|80781|collagen, type XVIII, alpha 1	0.0	0.0	
chr14	64874168	64874291	reg1003003.p1	7.747	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	-19133	+	AK302747 NM_005956	-19476	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	-68871	-	AK315336 NM_004857 BC057229	58031	+	TSC_hg19_v1_chr14_-_64970524 NM_006977 BC035804	96214	-	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	97029	+	AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_006977|ZBTB25|7597|zinc finger and BTB domain containing 25##BC035804|ZBTB25|7597|zinc finger and BTB domain containing 25##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1	1.992417	0.0	denovo_WM_7:-39:0.981	denovo_WM_7:42:0.449	denovo_WM_7:43:0.449
chr10	70962091	70962271	reg1003874.p1	7.745	+	TSC_hg19_v1_chr10_+_70940005 BC036112 NM_003171 AK290416 AK299670 AF042169 CU690300 DQ891004 DQ894183	-22166	+	BX647725 TSC_hg19_v1_chr10_+_70883987 AK290536	-78181	+	TSC_hg19_v1_chr10_+_70883982 AK022992	-78200	+	AK095086 NM_025130 BC110505 BC110504 TSC_hg19_v1_chr10_+_70980087 AK291024 BC069201	17900	+	NM_033497 NM_033498 NM_033500 U38226 U38227 U38228 AK128226	67576	+	NM_033496	113428	+	BC036112|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##NM_003171|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##AK290416|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##AK299670|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##AF042169|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##DQ891004|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##DQ894183|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##BX647725|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##AK290536|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##AK022992|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##AK095086|HKDC1|80201|hexokinase domain containing 1##NM_025130|HKDC1|80201|hexokinase domain containing 1##BC110505|HKDC1|80201|hexokinase domain containing 1##BC110504|HKDC1|80201|hexokinase domain containing 1##AK291024|HKDC1|80201|hexokinase domain containing 1##BC069201|HKDC1|80201|hexokinase domain containing 1##NM_033497|HK1|3098|hexokinase 1##NM_033498|HK1|3098|hexokinase 1##NM_033500|HK1|3098|hexokinase 1##U38226|HK1|3098|hexokinase 1##U38227|HK1|3098|hexokinase 1##U38228|HK1|3098|hexokinase 1##AK128226|HK1|3098|hexokinase 1##NM_033496|HK1|3098|hexokinase 1	1.292806	0.0	denovo_WM_7:0:0.329	denovo_WM_7:-22:0.238	denovo_WM_7:-25:0.371
chr1	101701105	101701263	reg1003473.p1	7.744	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-209751	+	BC003660 TSC_hg19_v1_chr1_-_101491341 AK125485 BC053857 AF132964 AF157319 AF248965 AK298181 AK225469 AK225707 AK225951 AK289351 NM_001077394 NM_001077395 NM_015958 AF161492	-209845	-	TSC_hg19_v1_chr1_+_101361700 AF233345 AB463270 AF529197 AM392927 AY094606	-339431	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	1197	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	1386	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	761303	-	AK125485|DPH5|51611|DPH5 homolog (S. cerevisiae)##BC053857|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF132964|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF157319|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF248965|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK298181|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK225469|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK225707|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK225951|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK289351|DPH5|51611|DPH5 homolog (S. cerevisiae)##NM_001077394|DPH5|51611|DPH5 homolog (S. cerevisiae)##NM_001077395|DPH5|51611|DPH5 homolog (S. cerevisiae)##NM_015958|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF161492|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF233345|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##AF529197|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##AM392927|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##AY094606|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3	0.997746	0.0	denovo_WM_7:-28:0.449	denovo_WM_7:-29:0.449
chr17	74264698	74264848	reg1004088.p4	7.744	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	-3266	+	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	-3489	+	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	-28325	-	EU832276 EU832361 BC131559 AL136774 NM_032134	38897	-	TSC_hg19_v1_chr17_-_74349591 CU679229 BC009012	84876	-	TSC_hg19_v1_chr17_-_74349948 D61391 AK312637	85156	-	BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##EU832276|QRICH2|84074|glutamine rich 2##EU832361|QRICH2|84074|glutamine rich 2##BC131559|QRICH2|84074|glutamine rich 2##AL136774|QRICH2|84074|glutamine rich 2##NM_032134|QRICH2|84074|glutamine rich 2##BC009012|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1##D61391|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1##AK312637|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1	0.994332	0.0	
chr4	1711272	1711374	reg1003238.p1	7.744	+	BC070112 NM_001013622 BC042071 NM_001174070	-25471	-	AK126919 NM_175918	-325984	+	TSC_hg19_v1_chr4_+_1341031 BC110331 AB040963 NM_020894 BC140901	-370055	+	BT007433 CU677395 DQ892370 DQ895579 Z71188 NM_006527 U75679 BC014908 BC015703 AK315635 TSC_hg19_v1_chr4_-_1714047 AK300826 AK091735 AX747152 AK093314	2669	-	TSC_hg19_v1_chr4_-_1722813 AK303880	11553	-	TSC_hg19_v1_chr4_-_1722981 BC126370 BC009331 BC018921 NM_001127266 NM_138385	11708	-	BC070112|FAM53A|152877|family with sequence similarity 53, member A##NM_001013622|FAM53A|152877|family with sequence similarity 53, member A##BC042071|FAM53A|152877|family with sequence similarity 53, member A##NM_001174070|FAM53A|152877|family with sequence similarity 53, member A##AK126919|CRIPAK|285464|cysteine-rich PAK1 inhibitor##NM_175918|CRIPAK|285464|cysteine-rich PAK1 inhibitor##BC110331|KIAA1530|57654|KIAA1530##AB040963|KIAA1530|57654|KIAA1530##NM_020894|KIAA1530|57654|KIAA1530##BC140901|KIAA1530|57654|KIAA1530##BT007433|SLBP|7884|stem-loop binding protein##DQ892370|SLBP|7884|stem-loop binding protein##DQ895579|SLBP|7884|stem-loop binding protein##Z71188|SLBP|7884|stem-loop binding protein##NM_006527|SLBP|7884|stem-loop binding protein##U75679|SLBP|7884|stem-loop binding protein##BC014908|SLBP|7884|stem-loop binding protein##BC015703|SLBP|7884|stem-loop binding protein##AK315635|SLBP|7884|stem-loop binding protein##AK300826|SLBP|7884|stem-loop binding protein##AK091735|SLBP|7884|stem-loop binding protein##AK093314|SLBP|7884|stem-loop binding protein##AK303880|TMEM129|92305|transmembrane protein 129##BC126370|TMEM129|92305|transmembrane protein 129##BC009331|TMEM129|92305|transmembrane protein 129##BC018921|TMEM129|92305|transmembrane protein 129##NM_001127266|TMEM129|92305|transmembrane protein 129##NM_138385|TMEM129|92305|transmembrane protein 129	0.997593	0.0	denovo_WM_7:25:0.449	denovo_WM_7:26:0.449
chr7	115763152	115763292	reg1004705.p2	7.744	+	TSC_hg19_v1_chr7_-_115670864 CR933605 NM_001018058 NM_012252	-92370	-	TSC_hg19_v1_chr7_-_115670820 AK313546	-92404	-	TSC_hg19_v1_chr7_-_115670796 D43945 BC029891	-92436	-	NM_015641 AK299104 TSC_hg19_v1_chr7_+_115850592 BC001451 AK021575 AK300546 AK309324 AK222840 AF245356 AJ250865 AK315644 AB529039 EU176352 EU176694	87431	+	AK310995 NM_152829 AK291802 AF245357	99797	+	TSC_hg19_v1_chr7_+_116139705 AY353255 BC005256 NM_001206747 NM_001233 NM_198212 AK310786 AK311964 AF035752 AB451285 AB451417 AB489180 AM393815 BT007051 CR407685	376505	+	CR933605|TFEC|22797|transcription factor EC##NM_001018058|TFEC|22797|transcription factor EC##NM_012252|TFEC|22797|transcription factor EC##AK313546|TFEC|22797|transcription factor EC##D43945|TFEC|22797|transcription factor EC##BC029891|TFEC|22797|transcription factor EC##NM_015641|TES|26136|testis derived transcript (3 LIM domains)##AK299104|TES|26136|testis derived transcript (3 LIM domains)##BC001451|TES|26136|testis derived transcript (3 LIM domains)##AK021575|TES|26136|testis derived transcript (3 LIM domains)##AK300546|TES|26136|testis derived transcript (3 LIM domains)##AK309324|TES|26136|testis derived transcript (3 LIM domains)##AK222840|TES|26136|testis derived transcript (3 LIM domains)##AF245356|TES|26136|testis derived transcript (3 LIM domains)##AJ250865|TES|26136|testis derived transcript (3 LIM domains)##AK315644|TES|26136|testis derived transcript (3 LIM domains)##EU176352|TES|26136|testis derived transcript (3 LIM domains)##EU176694|TES|26136|testis derived transcript (3 LIM domains)##AK310995|TES|26136|testis derived transcript (3 LIM domains)##NM_152829|TES|26136|testis derived transcript (3 LIM domains)##AK291802|TES|26136|testis derived transcript (3 LIM domains)##AF245357|TES|26136|testis derived transcript (3 LIM domains)##AY353255|CAV2|858|caveolin 2##BC005256|CAV2|858|caveolin 2##NM_001206747|CAV2|858|caveolin 2##NM_001233|CAV2|858|caveolin 2##NM_198212|CAV2|858|caveolin 2##AK310786|CAV2|858|caveolin 2##AK311964|CAV2|858|caveolin 2##AF035752|CAV2|858|caveolin 2##AB451285|CAV2|858|caveolin 2##AB451417|CAV2|858|caveolin 2##AM393815|CAV2|858|caveolin 2##BT007051|CAV2|858|caveolin 2##CR407685|CAV2|858|caveolin 2	0.0	0.688989	CTCF.p2:14:0.689
chr12	108130928	108131030	reg1004118.p1	7.743	+	TSC_hg19_v1_chr12_+_108079586 AK297961 BC010921 AK223162 BC032127 BC001652 L07758 NM_007062 BC046144 BC040135 BC000067 AK290681 DQ892735 DQ895982 DQ896014 CU674810 CU679850 AK296252	-51312	+	AK127295 NM_001017523	-156346	+	TSC_hg19_v1_chr12_+_107712210 BC027931 NM_001018072 BC146824	-418766	+	AK056378 TSC_hg19_v1_chr12_-_108154899	23860	-	TSC_hg19_v1_chr12_-_108154913 NM_012406	23931	-	TSC_hg19_v1_chr12_-_108154938 BC068562	24022	-	AK297961|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC010921|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK223162|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC032127|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC001652|PWP1|11137|PWP1 homolog (S. cerevisiae)##L07758|PWP1|11137|PWP1 homolog (S. cerevisiae)##NM_007062|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC046144|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC040135|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC000067|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK290681|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ892735|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ895982|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ896014|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK296252|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK127295|BTBD11|121551|BTB (POZ) domain containing 11##NM_001017523|BTBD11|121551|BTB (POZ) domain containing 11##BC027931|BTBD11|121551|BTB (POZ) domain containing 11##NM_001018072|BTBD11|121551|BTB (POZ) domain containing 11##BC146824|BTBD11|121551|BTB (POZ) domain containing 11##AK056378|PRDM4|11108|PR domain containing 4##NM_012406|PRDM4|11108|PR domain containing 4##BC068562|PRDM4|11108|PR domain containing 4	0.0	0.0	
chr16	17120468	17120648	reg1002692.p1	7.743	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-794028	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-794070	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-794076	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	444247	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1452833	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1677538	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.999414	0.0	
chr20	57468028	57468192	reg1004417.p1	7.743	+	TSC_hg19_v1_chr20_+_57466745 X04409 AB385065 EU832170 EU832264 CU678144 CU679149 X07036 AF064092 AF088184 AF493897 AF493898 BC066923 BT009905 M14631 AK315860 BC022875	-1282	+	TSC_hg19_v1_chr20_+_57466632 BC108315 BC002722 BC104928 X04408	-1496	+	TSC_hg19_v1_chr20_+_57466445 NM_000516 NM_001077488 NM_001077489 NM_080426 AK026564 AK225818 BC008855 BC089157	-1753	+	TSC_hg19_v1_chr20_+_57470201 AK093534	2115	+	TSC_hg19_v1_chr20_+_57470682 M77026	2554	+	TSC_hg19_v1_chr20_+_57556319 AK293410 AK304310 NM_198976	88197	+	X04409|GNAS|2778|GNAS complex locus##EU832170|GNAS|2778|GNAS complex locus##EU832264|GNAS|2778|GNAS complex locus##X07036|GNAS|2778|GNAS complex locus##AF064092|GNAS|2778|GNAS complex locus##AF088184|GNAS|2778|GNAS complex locus##AF493897|GNAS|2778|GNAS complex locus##AF493898|GNAS|2778|GNAS complex locus##BC066923|GNAS|2778|GNAS complex locus##BT009905|GNAS|2778|GNAS complex locus##M14631|GNAS|2778|GNAS complex locus##AK315860|GNAS|2778|GNAS complex locus##BC022875|GNAS|2778|GNAS complex locus##BC108315|GNAS|2778|GNAS complex locus##BC002722|GNAS|2778|GNAS complex locus##BC104928|GNAS|2778|GNAS complex locus##X04408|GNAS|2778|GNAS complex locus##NM_000516|GNAS|2778|GNAS complex locus##NM_001077488|GNAS|2778|GNAS complex locus##NM_001077489|GNAS|2778|GNAS complex locus##NM_080426|GNAS|2778|GNAS complex locus##AK026564|GNAS|2778|GNAS complex locus##AK225818|GNAS|2778|GNAS complex locus##BC008855|GNAS|2778|GNAS complex locus##BC089157|GNAS|2778|GNAS complex locus##AK093534|GNAS|2778|GNAS complex locus##M77026|GNAS|2778|GNAS complex locus##AK293410|TH1L|51497|TH1-like (Drosophila)##AK304310|TH1L|51497|TH1-like (Drosophila)##NM_198976|TH1L|51497|TH1-like (Drosophila)	1.85019	0.015286	denovo_WM_7:-71:0.359	denovo_WM_7:-73:0.456
chr19	3987525	3987705	reg1000092.p1	7.742	+	AK297398 AK298498 NM_001961 TSC_hg19_v1_chr19_-_3985462	-2153	-	TSC_hg19_v1_chr19_-_3985455 BC126259 BC136313 BC068002 BC006547 AK299225	-2214	-	TSC_hg19_v1_chr19_-_3984195 AB527843 AY942181 HQ258667 X51466 Z11692	-3364	-	TSC_hg19_v1_chr19_+_4007733 BC066895 AK022481 BC029874 NM_015897 AK222726 AB464092 AF077952 DQ892419 DQ895633 BC010047	20114	+	TSC_hg19_v1_chr19_-_4065504 BC084568	77881	-	BC113511 TSC_hg19_v1_chr19_-_4066828 AF000561 NM_015898 BC064505	79202	-	AK297398|EEF2|1938|eukaryotic translation elongation factor 2##AK298498|EEF2|1938|eukaryotic translation elongation factor 2##NM_001961|EEF2|1938|eukaryotic translation elongation factor 2##BC126259|EEF2|1938|eukaryotic translation elongation factor 2##BC136313|EEF2|1938|eukaryotic translation elongation factor 2##BC006547|EEF2|1938|eukaryotic translation elongation factor 2##AK299225|EEF2|1938|eukaryotic translation elongation factor 2##AY942181|EEF2|1938|eukaryotic translation elongation factor 2##HQ258667|EEF2|1938|eukaryotic translation elongation factor 2##X51466|EEF2|1938|eukaryotic translation elongation factor 2##Z11692|EEF2|1938|eukaryotic translation elongation factor 2##BC066895|PIAS4|51588|protein inhibitor of activated STAT, 4##AK022481|PIAS4|51588|protein inhibitor of activated STAT, 4##BC029874|PIAS4|51588|protein inhibitor of activated STAT, 4##NM_015897|PIAS4|51588|protein inhibitor of activated STAT, 4##AK222726|PIAS4|51588|protein inhibitor of activated STAT, 4##AF077952|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ892419|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ895633|PIAS4|51588|protein inhibitor of activated STAT, 4##BC010047|PIAS4|51588|protein inhibitor of activated STAT, 4##BC084568|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC113511|ZBTB7A|51341|zinc finger and BTB domain containing 7A##AF000561|ZBTB7A|51341|zinc finger and BTB domain containing 7A##NM_015898|ZBTB7A|51341|zinc finger and BTB domain containing 7A	0.998667	0.0	
chr2	54808666	54808807	reg1004045.p1	7.742	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-23171	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-124369	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-125124	+	NM_001039753	143412	+	TSC_hg19_v1_chr2_-_55199899 BC131571	391172	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	428636	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	0.998967	0.0	
chr6	78531067	78531161	reg1003868.p1	7.740	+	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	-357965	-	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	-1748815	-	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-2072105	+	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	1046141	+	BC064611 TSC_hg19_v1_chr6_-_79675737 AK000712	1144638	-	TSC_hg19_v1_chr6_+_79787573 BC036479	1256446	+	BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC064611|PHIP|55023|pleckstrin homology domain interacting protein##AK000712|PHIP|55023|pleckstrin homology domain interacting protein##BC036479|PHIP|55023|pleckstrin homology domain interacting protein	0.0	0.0	
chr11	64092281	64092422	reg1005938.p1	7.739	+	TSC_hg19_v1_chr11_+_64085676 AF124993 AF110731 BC113723 BC113725 BC143849 BC171733 AF112212 AF242525 AF231705 CR457203 HQ258129 AJ249483	-6629	+	BC110983 NM_012094 NM_181651 NM_181652 TSC_hg19_v1_chr11_+_64085600 AF197952	-6772	+	TSC_hg19_v1_chr11_-_64085009 AK312050 DQ892261 DQ895463 BC105294 BC029482 BC017172 AF161501 AF229068 NM_016404	-7330	-	TSC_hg19_v1_chr11_+_64107692 BC151218 BC151222 NM_032251 AK090436 BC140822 BC140824 BC141866	15351	+	TSC_hg19_v1_chr11_+_64120348 AK126728	28008	+	TSC_hg19_v1_chr11_+_64126642 AK223561 NM_001006944 NM_003942 AJ010119 AK292163 AK313567 BC047896 AK298507 BC028079 CU690526 AF074715	34380	+	AF124993|PRDX5|25824|peroxiredoxin 5##AF110731|PRDX5|25824|peroxiredoxin 5##BC113723|PRDX5|25824|peroxiredoxin 5##BC113725|PRDX5|25824|peroxiredoxin 5##BC143849|PRDX5|25824|peroxiredoxin 5##BC171733|PRDX5|25824|peroxiredoxin 5##AF112212|PRDX5|25824|peroxiredoxin 5##AF242525|PRDX5|25824|peroxiredoxin 5##AF231705|PRDX5|25824|peroxiredoxin 5##CR457203|PRDX5|25824|peroxiredoxin 5##HQ258129|PRDX5|25824|peroxiredoxin 5##AJ249483|PRDX5|25824|peroxiredoxin 5##BC110983|PRDX5|25824|peroxiredoxin 5##NM_012094|PRDX5|25824|peroxiredoxin 5##NM_181651|PRDX5|25824|peroxiredoxin 5##NM_181652|PRDX5|25824|peroxiredoxin 5##AF197952|PRDX5|25824|peroxiredoxin 5##AK312050|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ892261|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ895463|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC105294|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC029482|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC017172|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF161501|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF229068|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##NM_016404|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC151218|CCDC88B|283234|coiled-coil domain containing 88B##BC151222|CCDC88B|283234|coiled-coil domain containing 88B##NM_032251|CCDC88B|283234|coiled-coil domain containing 88B##AK090436|CCDC88B|283234|coiled-coil domain containing 88B##BC140822|CCDC88B|283234|coiled-coil domain containing 88B##BC140824|CCDC88B|283234|coiled-coil domain containing 88B##BC141866|CCDC88B|283234|coiled-coil domain containing 88B##AK126728|CCDC88B|283234|coiled-coil domain containing 88B##AK223561|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_001006944|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_003942|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AJ010119|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK292163|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK313567|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC047896|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK298507|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC028079|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AF074715|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4	1.986782	0.0	denovo_WM_7:-58:0.966	denovo_WM_7:-73:0.487	denovo_WM_7:-74:0.505
chr2	85165844	85166024	reg1003364.p2	7.738	+	TSC_hg19_v1_chr2_+_85133055 M92381	-32872	+	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	-33139	+	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	-57631	-	TSC_hg19_v1_chr2_+_85198299 NM_020122	32350	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	32557	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	194725	+	M92381|TMSB10|9168|thymosin beta 10##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)	1.363734	0.0	denovo_WM_7:56:0.378	denovo_WM_7:71:0.495
chr3	129286923	129287042	reg1004856.p2	7.737	+	AY158091 NM_153833	-24926	+	NM_000539 BX537381 BC112104 BC112106 AB464154 AM392780	-39455	+	TSC_hg19_v1_chr3_+_129159160 AK298526 AK299903 CU678342 EU832629 EU832704	-127820	+	TSC_hg19_v1_chr3_-_129325518 NM_015103 AB014520 AY116661 BC150280	38457	-	AK291448 BC039859 NM_001017395	312328	-	TSC_hg19_v1_chr3_-_129612445 NM_001128224	325436	-	AY158091|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_153833|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_000539|RHO|6010|rhodopsin##BX537381|RHO|6010|rhodopsin##BC112104|RHO|6010|rhodopsin##BC112106|RHO|6010|rhodopsin##AM392780|RHO|6010|rhodopsin##AK298526|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##AK299903|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##EU832629|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##EU832704|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##NM_015103|PLXND1|23129|plexin D1##AB014520|PLXND1|23129|plexin D1##AY116661|PLXND1|23129|plexin D1##BC150280|PLXND1|23129|plexin D1##AK291448|TMCC1|23023|transmembrane and coiled-coil domain family 1##BC039859|TMCC1|23023|transmembrane and coiled-coil domain family 1##NM_001017395|TMCC1|23023|transmembrane and coiled-coil domain family 1##NM_001128224|TMCC1|23023|transmembrane and coiled-coil domain family 1	0.978712	0.0	denovo_WM_7:-39:0.209	denovo_WM_7:-40:0.659
chr15	44580334	44580460	reg1003494.p2	7.735	+	AK090572 AX746516 TSC_hg19_v1_chr15_-_44487470	-92928	-	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	-93047	-	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	-461210	+	TSC_hg19_v1_chr15_+_44580919 NM_138423 NM_177974 BC012124	502	+	AK098265 TSC_hg19_v1_chr15_+_44580937	544	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	562	+	AK090572|FRMD5|84978|FERM domain containing 5##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5##NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##NM_138423|CASC4|113201|cancer susceptibility candidate 4##NM_177974|CASC4|113201|cancer susceptibility candidate 4##BC012124|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4	0.0	0.0	
chr3	119457037	119457195	reg1005554.p1	7.735	+	TSC_hg19_v1_chr3_+_119421876 AF440403 BC035248 CR749242 NM_033364 AF497717 AK055558 BC126394 AK302699 AK309317 AK294413 AK303997 AK289914 HQ258654	-35214	+	TSC_hg19_v1_chr3_-_119396232 AK312143 BC105280 BC010933 L77701 NM_005694 BC108317	-60870	-	CU692240 AF204173 NM_022135 AK314819 BC044929	-77764	-	AJ009936 AJ009937 NM_003889 NM_033013	42214	+	AF061056 AK310789 AK223456 TSC_hg19_v1_chr3_+_119500896	43766	+	BC017304 TSC_hg19_v1_chr3_+_119500947	43829	+	AF440403|C3orf15|89876|chromosome 3 open reading frame 15##BC035248|C3orf15|89876|chromosome 3 open reading frame 15##CR749242|C3orf15|89876|chromosome 3 open reading frame 15##NM_033364|C3orf15|89876|chromosome 3 open reading frame 15##AF497717|C3orf15|89876|chromosome 3 open reading frame 15##AK055558|C3orf15|89876|chromosome 3 open reading frame 15##BC126394|C3orf15|89876|chromosome 3 open reading frame 15##AK302699|C3orf15|89876|chromosome 3 open reading frame 15##AK309317|C3orf15|89876|chromosome 3 open reading frame 15##AK294413|C3orf15|89876|chromosome 3 open reading frame 15##AK303997|C3orf15|89876|chromosome 3 open reading frame 15##AK289914|C3orf15|89876|chromosome 3 open reading frame 15##HQ258654|C3orf15|89876|chromosome 3 open reading frame 15##AK312143|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC105280|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC010933|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##L77701|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_005694|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC108317|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##AF204173|POPDC2|64091|popeye domain containing 2##NM_022135|POPDC2|64091|popeye domain containing 2##AK314819|POPDC2|64091|popeye domain containing 2##BC044929|POPDC2|64091|popeye domain containing 2##AJ009936|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##AJ009937|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##NM_003889|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##NM_033013|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##AF061056|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##AK310789|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##AK223456|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##BC017304|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2	1.995405	0.0	denovo_WM_7:71:0.305	denovo_WM_7:72:0.244	denovo_WM_7:89:0.258	denovo_WM_7:90:0.319
chr5	107817192	107817320	reg1004785.p2	7.735	+	BC063316 NM_001163315	-99458	-	TSC_hg19_v1_chr5_-_107717106 AK126722	-100126	-	AK308672 NM_001962 U26403	-810666	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	246724	-	AK293376 J03358 NM_005246 AK296874	266306	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	267416	+	BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AB593118|HP07349|100652853|uncharacterized protein HP07349##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase	0.015448	0.966015	CTCF.p2:-20:0.966
chr2	128612518	128612617	reg1003339.p1	7.734	+	BC005401 TSC_hg19_v1_chr2_-_128568746 NM_001006622 NM_001006623 NM_018383	-43811	-	BC108671 TSC_hg19_v1_chr2_-_128568739 AB044749 AK002156 BC013990 BC068484 AK223319	-43864	-	BC133675 TSC_hg19_v1_chr2_+_128459070 AK074549	-153542	+	AB464041 TSC_hg19_v1_chr2_-_128615689	3114	-	TSC_hg19_v1_chr2_-_128615699 U85510 BC017205	3130	-	TSC_hg19_v1_chr2_-_128615717 BC093795 NM_004805 BC093797	3158	-	BC005401|WDR33|55339|WD repeat domain 33##NM_001006622|WDR33|55339|WD repeat domain 33##NM_001006623|WDR33|55339|WD repeat domain 33##NM_018383|WDR33|55339|WD repeat domain 33##BC108671|WDR33|55339|WD repeat domain 33##AB044749|WDR33|55339|WD repeat domain 33##AK002156|WDR33|55339|WD repeat domain 33##BC013990|WDR33|55339|WD repeat domain 33##BC068484|WDR33|55339|WD repeat domain 33##AK223319|WDR33|55339|WD repeat domain 33##AK074549|SFT2D3|84826|SFT2 domain containing 3##U85510|POLR2D|5433|polymerase (RNA) II (DNA directed) polypeptide D##BC017205|POLR2D|5433|polymerase (RNA) II (DNA directed) polypeptide D##BC093795|POLR2D|5433|polymerase (RNA) II (DNA directed) polypeptide D##NM_004805|POLR2D|5433|polymerase (RNA) II (DNA directed) polypeptide D##BC093797|POLR2D|5433|polymerase (RNA) II (DNA directed) polypeptide D	0.998517	0.0	
chr2	153421245	153421425	reg1003737.p1	7.733	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	-229362	+	TSC_hg19_v1_chr2_+_153191687 NM_052905	-229665	+	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	-388985	-	TSC_hg19_v1_chr2_-_153573924 U70667 AF049524 AF049528 BC000273 BC073138 BC011788 AF049523 AK298547 AK024810 BC029414 NM_017892	152585	-	TSC_hg19_v1_chr2_+_153574392 NM_152522 AK023109	153113	+	TSC_hg19_v1_chr2_+_153575123 AK315657	153780	+	BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2##NM_052905|FMNL2|114793|formin-like 2##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##U70667|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049524|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049528|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC000273|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC073138|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC011788|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049523|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK298547|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK024810|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC029414|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_017892|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_152522|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK023109|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK315657|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6	1.860712	0.0	denovo_WM_7:-78:0.784
chr11	22184933	22185058	reg1003485.p2	7.732	+	AK127805 AK299558 NM_006157 NM_201551 AK313445 AK303736 D83017 BC069674 BC096100 BC096101 BC096102 BC096103 CU686968	-1493803	+	NM_004211 AF085412	-1564048	+	BC047226 TSC_hg19_v1_chr11_+_20409261 AK301449 AK298185 AK300591 BC037544 AB590779 EU831425 EU831518	-1775735	+	TSC_hg19_v1_chr11_+_22214577 AB125267 AL832374 AL833271 NM_001142649 NM_213599	29652	+	AB032435 NM_020346	174671	+	TSC_hg19_v1_chr11_-_22647372 AF181995 AB464520 BC047028 AF181994 AK223277 AK001716 AK023153 BX640996 BC093867 BC101807 BC035346 BC063038 NM_022725	462366	-	AK127805|NELL1|4745|NEL-like 1 (chicken)##AK299558|NELL1|4745|NEL-like 1 (chicken)##NM_006157|NELL1|4745|NEL-like 1 (chicken)##NM_201551|NELL1|4745|NEL-like 1 (chicken)##AK313445|NELL1|4745|NEL-like 1 (chicken)##AK303736|NELL1|4745|NEL-like 1 (chicken)##D83017|NELL1|4745|NEL-like 1 (chicken)##BC069674|NELL1|4745|NEL-like 1 (chicken)##BC096100|NELL1|4745|NEL-like 1 (chicken)##BC096101|NELL1|4745|NEL-like 1 (chicken)##BC096102|NELL1|4745|NEL-like 1 (chicken)##BC096103|NELL1|4745|NEL-like 1 (chicken)##NM_004211|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AF085412|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##BC047226|PRMT3|10196|protein arginine methyltransferase 3##AK301449|PRMT3|10196|protein arginine methyltransferase 3##AK298185|PRMT3|10196|protein arginine methyltransferase 3##AK300591|PRMT3|10196|protein arginine methyltransferase 3##BC037544|PRMT3|10196|protein arginine methyltransferase 3##EU831425|PRMT3|10196|protein arginine methyltransferase 3##EU831518|PRMT3|10196|protein arginine methyltransferase 3##AB125267|ANO5|203859|anoctamin 5##AL832374|ANO5|203859|anoctamin 5##AL833271|ANO5|203859|anoctamin 5##NM_001142649|ANO5|203859|anoctamin 5##NM_213599|ANO5|203859|anoctamin 5##AB032435|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##NM_020346|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##AF181995|FANCF|2188|Fanconi anemia, complementation group F##BC047028|FANCF|2188|Fanconi anemia, complementation group F##AF181994|FANCF|2188|Fanconi anemia, complementation group F##AK223277|FANCF|2188|Fanconi anemia, complementation group F##AK001716|FANCF|2188|Fanconi anemia, complementation group F##AK023153|FANCF|2188|Fanconi anemia, complementation group F##BX640996|FANCF|2188|Fanconi anemia, complementation group F##BC093867|FANCF|2188|Fanconi anemia, complementation group F##BC101807|FANCF|2188|Fanconi anemia, complementation group F##BC063038|FANCF|2188|Fanconi anemia, complementation group F##NM_022725|FANCF|2188|Fanconi anemia, complementation group F	1.520745	0.0	denovo_WM_7:0:0.901	denovo_WM_7:-47:0.395
chr8	56888309	56888424	reg1002903.p1	7.732	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-95846	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-95971	+	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	-96001	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	98720	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	138174	-	TSC_hg19_v1_chr8_-_57123833 U65002	235469	-	AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1	0.951732	0.0	denovo_WM_7:0:0.774
chr16	31005861	31006009	reg1002221.p1	7.731	+	TSC_hg19_v1_chr16_+_30996538 NM_001142777 NM_001142778 NM_025193 AK057436 BC004929 AK290950 AK292068	-9406	+	TSC_hg19_v1_chr16_+_30969464 BC108673	-36398	+	AB002337 NM_014712	-37321	+	AB527655 AY995211 BC062298 AY028792 NM_052874 TSC_hg19_v1_chr16_-_31021950	15914	-	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	38481	+	TSC_hg19_v1_chr16_+_31044856 AK315716	38920	+	NM_001142777|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_001142778|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_025193|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK057436|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##BC004929|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK290950|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK292068|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AB002337|SETD1A|9739|SET domain containing 1A##NM_014712|SETD1A|9739|SET domain containing 1A##AY995211|STX1B|112755|syntaxin 1B##BC062298|STX1B|112755|syntaxin 1B##AY028792|STX1B|112755|syntaxin 1B##NM_052874|STX1B|112755|syntaxin 1B##AK091833|STX4|6810|syntaxin 4##AK315716|STX4|6810|syntaxin 4	0.98681	0.0	denovo_WM_7:-17:0.763
chr14	71122088	71122260	reg1004212.p3	7.730	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-13565	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-54797	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-54814	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	153635	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	251959	+	TSC_hg19_v1_chr14_+_71374441 BC140784	252277	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	0.984645	0.0	denovo_WM_7:-41:0.445	denovo_WM_7:-42:0.287
chr21	35402552	35402683	reg1000551.p1	7.730	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-114525	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-211947	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-387762	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	43224	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	43312	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	333729	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.0	0.0	
chr6	42739027	42739131	reg1002921.p1	7.730	+	TSC_hg19_v1_chr6_+_42714735 D87077	-24336	+	TSC_hg19_v1_chr6_-_42714549 BC017479	-24527	-	TSC_hg19_v1_chr6_-_42713837 NM_003192	-25204	-	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	10618	+	TSC_hg19_v1_chr6_+_42750789 AK096036	11582	+	TSC_hg19_v1_chr6_+_42751233 AK098234	12162	+	D87077|KIAA0240|23506|KIAA0240##BC017479|TBCC|6903|tubulin folding cofactor C##NM_003192|TBCC|6903|tubulin folding cofactor C##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##AK096036|FLJ38717|401261|FLJ38717 protein##AK098234|FLJ38717|401261|FLJ38717 protein	0.922761	0.033628	denovo_WM_7:35:0.822
chr20	2282109	2282240	reg1003342.p1	7.727	+	NM_003245 AK298637 AK299447 AK308249 AK290324 AK291351 AK315236 L10386 BC109075 BC109076	-5525	+	TSC_hg19_v1_chr20_-_2083527 BC034792	-198648	-	BC140883 BC140884 TSC_hg19_v1_chr20_+_2083583 AB527968 AF195026 BC111573 BC017340 AK302629	-198659	+	AF540969 AF540970 NM_198994	79379	+	TSC_hg19_v1_chr20_-_2451416 X17568 X17567 BC080516	169216	-	TSC_hg19_v1_chr20_-_2451436 AK301034 AK312620 AK301206 AK307093 AK307266	169258	-	NM_003245|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK298637|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK299447|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK308249|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK290324|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK291351|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK315236|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##L10386|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC109075|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC109076|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC140883|STK35|140901|serine/threonine kinase 35##BC140884|STK35|140901|serine/threonine kinase 35##AF195026|STK35|140901|serine/threonine kinase 35##BC111573|STK35|140901|serine/threonine kinase 35##BC017340|STK35|140901|serine/threonine kinase 35##AK302629|STK35|140901|serine/threonine kinase 35##AF540969|TGM6|343641|transglutaminase 6##AF540970|TGM6|343641|transglutaminase 6##NM_198994|TGM6|343641|transglutaminase 6##X17568|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##X17567|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##BC080516|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK301034|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK312620|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK301206|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK307093|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1	0.991913	0.0	denovo_WM_7:7:0.685
chr6	25043302	25043421	reg1004258.p1	7.727	+	TSC_hg19_v1_chr6_-_24936189 AK299047	-107178	-	AB002384 NM_014722	-132167	-	U49187 AK300138 BC001232 NM_015864	-165844	-	TSC_hg19_v1_chr6_+_25279316 BC040903	235957	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	236297	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	236533	+	AK299047|FAM65B|9750|family with sequence similarity 65, member B##AB002384|FAM65B|9750|family with sequence similarity 65, member B##NM_014722|FAM65B|9750|family with sequence similarity 65, member B##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A	0.971068	0.0	denovo_WM_7:-27:0.679
chr12	25310704	25310826	reg1004498.p2	7.726	+	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	-105185	+	NM_001204126 NM_001204127 NM_006152	-105585	+	BC035880 NM_001101339 BC046192 BC062789	-160353	-	BC028415 AK297998 AK302235 AK301763 AK093102 AX747924 BC031047 BC047415 BC057795 NM_001082972 NM_001082973 NM_001204101 NM_001204102 NM_018272 AK304602	37298	-	TSC_hg19_v1_chr12_+_25348156 AK057730 NM_001001660	37386	+	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	37441	+	BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein##NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##BC028415|CASC1|55259|cancer susceptibility candidate 1##AK297998|CASC1|55259|cancer susceptibility candidate 1##AK302235|CASC1|55259|cancer susceptibility candidate 1##AK301763|CASC1|55259|cancer susceptibility candidate 1##AK093102|CASC1|55259|cancer susceptibility candidate 1##BC031047|CASC1|55259|cancer susceptibility candidate 1##BC047415|CASC1|55259|cancer susceptibility candidate 1##BC057795|CASC1|55259|cancer susceptibility candidate 1##NM_001082972|CASC1|55259|cancer susceptibility candidate 1##NM_001082973|CASC1|55259|cancer susceptibility candidate 1##NM_001204101|CASC1|55259|cancer susceptibility candidate 1##NM_001204102|CASC1|55259|cancer susceptibility candidate 1##NM_018272|CASC1|55259|cancer susceptibility candidate 1##AK304602|CASC1|55259|cancer susceptibility candidate 1##AK057730|LYRM5|144363|LYR motif containing 5##NM_001001660|LYRM5|144363|LYR motif containing 5##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5	0.99295	0.0	denovo_WM_7:14:0.971
chr19	40670177	40670310	reg1000267.p2	7.726	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-73431	-	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-108117	-	NM_178544 AK122968 AK292528 BC045649	-167258	+	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	27403	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	54045	-	AK023327 AK301833 NM_024877	62336	-	AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2	0.995188	0.0	
chr6	112167787	112167916	reg1003987.p1	7.726	+	BC032496 NM_153048	-87543	-	AB451293 AB451426 AB528738 CU689398 S74774 NM_153047	-126593	-	NM_001164281 NM_147686	-240378	-	M14676 TSC_hg19_v1_chr6_-_112194641 M14333	26684	-	TSC_hg19_v1_chr6_-_112194648 NM_002037	26804	-	BC012028 NM_003880 BC035250 NM_198239 BC105940 BC105941 AY358349 AF100781 AY358350 AB075040	207566	+	BC032496|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153048|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451293|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451426|FYN|2534|FYN oncogene related to SRC, FGR, YES##S74774|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153047|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_001164281|TRAF3IP2|10758|TRAF3 interacting protein 2##NM_147686|TRAF3IP2|10758|TRAF3 interacting protein 2##M14676|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14333|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_002037|FYN|2534|FYN oncogene related to SRC, FGR, YES##BC012028|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_003880|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC035250|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_198239|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105940|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105941|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358349|WISP3|8838|WNT1 inducible signaling pathway protein 3##AF100781|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358350|WISP3|8838|WNT1 inducible signaling pathway protein 3##AB075040|WISP3|8838|WNT1 inducible signaling pathway protein 3	0.973489	0.0	denovo_WM_7:-3:0.632	denovo_WM_7:-4:0.217
chr20	17976807	17976932	reg1003586.p1	7.725	+	TSC_hg19_v1_chr20_+_17949742 AF306686 AK315532 AF306684 AF306685 AK027503 BC016869 NM_052865	-27207	+	TSC_hg19_v1_chr20_-_17949438 BC002724 BC062638 BC064555 BC073171 AK123903 AK308017 AK296947 BC000100 AF121855 NM_152227	-27429	-	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	-27655	-	AK022284 NM_021220 BC006148	61653	-	TSC_hg19_v1_chr20_+_18118516 NM_001164811 AY358666	141663	+	NM_020536 BC007537	146046	+	AF306686|C20orf72|92667|chromosome 20 open reading frame 72##AK315532|C20orf72|92667|chromosome 20 open reading frame 72##AF306684|C20orf72|92667|chromosome 20 open reading frame 72##AF306685|C20orf72|92667|chromosome 20 open reading frame 72##AK027503|C20orf72|92667|chromosome 20 open reading frame 72##BC016869|C20orf72|92667|chromosome 20 open reading frame 72##NM_052865|C20orf72|92667|chromosome 20 open reading frame 72##BC002724|SNX5|27131|sorting nexin 5##BC062638|SNX5|27131|sorting nexin 5##AK123903|SNX5|27131|sorting nexin 5##AK308017|SNX5|27131|sorting nexin 5##AK296947|SNX5|27131|sorting nexin 5##BC000100|SNX5|27131|sorting nexin 5##AF121855|SNX5|27131|sorting nexin 5##NM_152227|SNX5|27131|sorting nexin 5##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5##AK022284|OVOL2|58495|ovo-like 2 (Drosophila)##NM_021220|OVOL2|58495|ovo-like 2 (Drosophila)##BC006148|OVOL2|58495|ovo-like 2 (Drosophila)##NM_001164811|PET117|100303755|cytochrome c oxidase assembly factor-like##AY358666|PET117|100303755|cytochrome c oxidase assembly factor-like##NM_020536|CSRP2BP|57325|CSRP2 binding protein##BC007537|CSRP2BP|57325|CSRP2 binding protein	0.0	0.281673	CTCF.p2:34:0.282
chr2	102396191	102396342	reg1004026.p1	7.725	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-81914	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-305073	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-392277	-	TSC_hg19_v1_chr2_+_102508334 BC045694	112076	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	112266	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	212097	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.997827	0.0	denovo_WM_7:11:0.478	denovo_WM_7:12:0.427
chr7	74074427	74074563	reg1002305.p4	7.725	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-2373	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-2451	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-2474	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	113857	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	193344	-	TSC_hg19_v1_chr7_-_74306679 BC002581	232180	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.998531	0.0	denovo_WM_7:23:0.449	denovo_WM_7:24:0.449
chr16	1755641	1755791	reg1003600.p1	7.724	+	TSC_hg19_v1_chr16_+_1728290 BC014438 AK296888 AK303927 AY598330 AK309930	-27410	+	BC060853 TSC_hg19_v1_chr16_+_1728289	-27430	+	AK309909 AK296998 NM_144570 TSC_hg19_v1_chr16_+_1728279 AK023154	-27448	+	TSC_hg19_v1_chr16_+_1756229 AB621811 AB028989 BC150266 NM_001040439 NM_015133 AK024437 BC137123 BC137124 BC144486 CR749696	554	+	TSC_hg19_v1_chr16_-_1821542 AK308663 AB528303 DQ892515 EU176697 U29656	65823	-	BC000250 NM_002513 TSC_hg19_v1_chr16_-_1821728	66023	-	BC014438|HN1L|90861|hematological and neurological expressed 1-like##AK296888|HN1L|90861|hematological and neurological expressed 1-like##AK303927|HN1L|90861|hematological and neurological expressed 1-like##AY598330|HN1L|90861|hematological and neurological expressed 1-like##AK309930|HN1L|90861|hematological and neurological expressed 1-like##BC060853|HN1L|90861|hematological and neurological expressed 1-like##AK309909|HN1L|90861|hematological and neurological expressed 1-like##AK296998|HN1L|90861|hematological and neurological expressed 1-like##NM_144570|HN1L|90861|hematological and neurological expressed 1-like##AK023154|HN1L|90861|hematological and neurological expressed 1-like##AB028989|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC150266|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##NM_001040439|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##NM_015133|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##AK024437|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC137123|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC137124|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC144486|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##CR749696|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##AK308663|NME3|4832|non-metastatic cells 3, protein expressed in##DQ892515|NME3|4832|non-metastatic cells 3, protein expressed in##EU176697|NME3|4832|non-metastatic cells 3, protein expressed in##U29656|NME3|4832|non-metastatic cells 3, protein expressed in##BC000250|NME3|4832|non-metastatic cells 3, protein expressed in##NM_002513|NME3|4832|non-metastatic cells 3, protein expressed in	0.989972	0.0	denovo_WM_7:-56:0.234	denovo_WM_7:-57:0.234	denovo_WM_7:-58:0.234	denovo_WM_7:-59:0.234
chr16	73635366	73635490	reg1004135.p1	7.724	+	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	-542842	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	-553207	-	TSC_hg19_v1_chr16_-_72991733 BC029653	-643723	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	695265	+	TSC_hg19_v1_chr16_+_74330732 D50063 AB528643 CU680372	695343	+	TSC_hg19_v1_chr16_-_74401811 AK124154	766384	-	D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##BC029653|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##D50063|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.991743	0.0	denovo_WM_7:-49:0.331	denovo_WM_7:-50:0.331	denovo_WM_7:-51:0.331
chr9	139433745	139433860	reg1003920.p1	7.724	+	TSC_hg19_v1_chr9_-_139378220 AB593115	-55560	-	BC036221 NM_152571 AK055336	-55832	+	TSC_hg19_v1_chr9_-_139377505 AB002308 NM_014866	-56298	-	AF308602 M73980 NM_017617 TSC_hg19_v1_chr9_-_139440260	6448	-	NM_016215 AL512735 AY358903 BC088371 AY358902	123599	+	TSC_hg19_v1_chr9_+_139560219 NM_201446	126413	+	AB593115|SEC16A|9919|SEC16 homolog A (S. cerevisiae)##BC036221|C9orf163|158055|chromosome 9 open reading frame 163##NM_152571|C9orf163|158055|chromosome 9 open reading frame 163##AK055336|C9orf163|158055|chromosome 9 open reading frame 163##AB002308|SEC16A|9919|SEC16 homolog A (S. cerevisiae)##NM_014866|SEC16A|9919|SEC16 homolog A (S. cerevisiae)##AF308602|NOTCH1|4851|notch 1##M73980|NOTCH1|4851|notch 1##NM_017617|NOTCH1|4851|notch 1##NM_016215|EGFL7|51162|EGF-like-domain, multiple 7##AL512735|EGFL7|51162|EGF-like-domain, multiple 7##AY358903|EGFL7|51162|EGF-like-domain, multiple 7##BC088371|EGFL7|51162|EGF-like-domain, multiple 7##AY358902|EGFL7|51162|EGF-like-domain, multiple 7##NM_201446|EGFL7|51162|EGF-like-domain, multiple 7	0.911847	0.0	denovo_WM_7:47:0.262
chr12	65550204	65550358	reg1004854.p1	7.723	+	TSC_hg19_v1_chr12_-_65515349 NM_007191	-34931	-	AK301818 TSC_hg19_v1_chr12_-_65515286	-35000	-	TSC_hg19_v1_chr12_-_65515107 AF122922 BC018037 AY358344	-35196	-	TSC_hg19_v1_chr12_+_65563362 AK312473 NM_001167614 NM_014319 AK304317 AF112299	13073	+	NM_001031679 NM_001193460 NM_198080 TSC_hg19_v1_chr12_+_65672483 AK316365 AK293084 AK299065 AY358229 BX648776 AL833622 BC040053	122244	+	TSC_hg19_v1_chr12_+_65672705 NM_001193461	122443	+	NM_007191|WIF1|11197|WNT inhibitory factor 1##AK301818|WIF1|11197|WNT inhibitory factor 1##AF122922|WIF1|11197|WNT inhibitory factor 1##BC018037|WIF1|11197|WNT inhibitory factor 1##AY358344|WIF1|11197|WNT inhibitory factor 1##AK312473|LEMD3|23592|LEM domain containing 3##NM_001167614|LEMD3|23592|LEM domain containing 3##NM_014319|LEMD3|23592|LEM domain containing 3##AK304317|LEMD3|23592|LEM domain containing 3##AF112299|LEMD3|23592|LEM domain containing 3##NM_001031679|MSRB3|253827|methionine sulfoxide reductase B3##NM_001193460|MSRB3|253827|methionine sulfoxide reductase B3##NM_198080|MSRB3|253827|methionine sulfoxide reductase B3##AK316365|MSRB3|253827|methionine sulfoxide reductase B3##AK293084|MSRB3|253827|methionine sulfoxide reductase B3##AK299065|MSRB3|253827|methionine sulfoxide reductase B3##AY358229|MSRB3|253827|methionine sulfoxide reductase B3##BX648776|MSRB3|253827|methionine sulfoxide reductase B3##AL833622|MSRB3|253827|methionine sulfoxide reductase B3##BC040053|MSRB3|253827|methionine sulfoxide reductase B3##NM_001193461|MSRB3|253827|methionine sulfoxide reductase B3	0.974561	0.0	denovo_WM_7:-35:0.776
chr6	106969471	106969612	reg1004348.p3	7.723	+	TSC_hg19_v1_chr6_+_106960443 U83115	-9130	+	AK056705 NM_001624	-9812	+	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	-195878	-	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	107739	-	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	107956	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	379931	+	U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203	0.996448	0.0	
chrX	148958630	148958810	reg1004583.p1	7.723	+	AK292272 AK313321 NM_001080790 BC002351 NM_005365	-95125	+	NM_001164415 NM_016153	-102995	+	NM_005366 AY747607 BC004479	-164951	+	AK313943 NM_001166400 NM_001166401 NM_005364 BC002455 BC012744	51250	+	L43575 TSC_hg19_v1_chrX_-_149106661 U66042 NM_001013845	147962	-	TSC_hg19_v1_chrX_+_149529838 AK302612	571113	+	AK292272|MAGEA9|4108|melanoma antigen family A, 9##AK313321|MAGEA9|4108|melanoma antigen family A, 9##NM_001080790|MAGEA9B|728269|melanoma antigen family A, 9B##BC002351|MAGEA9|4108|melanoma antigen family A, 9##NM_005365|MAGEA9|4108|melanoma antigen family A, 9##NM_001164415|HSFX2|100130086|heat shock transcription factor family, X linked 2##NM_016153|HSFX1|100506164|heat shock transcription factor family, X linked 1##NM_005366|MAGEA11|4110|melanoma antigen family A, 11##AY747607|MAGEA11|4110|melanoma antigen family A, 11##BC004479|MAGEA11|4110|melanoma antigen family A, 11##AK313943|MAGEA8|4107|melanoma antigen family A, 8##NM_001166400|MAGEA8|4107|melanoma antigen family A, 8##NM_001166401|MAGEA8|4107|melanoma antigen family A, 8##NM_005364|MAGEA8|4107|melanoma antigen family A, 8##BC002455|MAGEA8|4107|melanoma antigen family A, 8##BC012744|MAGEA8|4107|melanoma antigen family A, 8##L43575|CXorf40B|541578|chromosome X open reading frame 40B##U66042|CXorf40B|541578|chromosome X open reading frame 40B##NM_001013845|CXorf40B|541578|chromosome X open reading frame 40B##AK302612|MAMLD1|10046|mastermind-like domain containing 1	0.0	0.0	
chr20	35224194	35224344	reg1004187.p1	7.722	+	NM_001199515 NM_001199535	-21313	+	TSC_hg19_v1_chr20_+_35202041 AK313919 NM_021809 AB042646 BC006549 BC012816 AK074802	-22268	+	TSC_hg19_v1_chr20_+_35201854 NM_001199513 NM_001199514	-22377	+	TSC_hg19_v1_chr20_+_35234142 NM_001199534 NM_018840 NM_199483	9841	+	TSC_hg19_v1_chr20_+_35234167 AF112213	9894	+	TSC_hg19_v1_chr20_+_35234211 BC004446 BC001871 AF274936 S83364	10035	+	NM_001199515|TGIF2|60436|TGFB-induced factor homeobox 2##NM_001199535|TGIF2-C20ORF24|100527943|TGIF2-C20orf24 readthrough##AK313919|TGIF2|60436|TGFB-induced factor homeobox 2##NM_021809|TGIF2|60436|TGFB-induced factor homeobox 2##AB042646|TGIF2|60436|TGFB-induced factor homeobox 2##BC006549|TGIF2|60436|TGFB-induced factor homeobox 2##BC012816|TGIF2|60436|TGFB-induced factor homeobox 2##AK074802|TGIF2|60436|TGFB-induced factor homeobox 2##NM_001199513|TGIF2|60436|TGFB-induced factor homeobox 2##NM_001199514|TGIF2|60436|TGFB-induced factor homeobox 2##NM_001199534|C20orf24|55969|chromosome 20 open reading frame 24##NM_018840|C20orf24|55969|chromosome 20 open reading frame 24##NM_199483|C20orf24|55969|chromosome 20 open reading frame 24##AF112213|C20orf24|55969|chromosome 20 open reading frame 24##BC004446|C20orf24|55969|chromosome 20 open reading frame 24##BC001871|C20orf24|55969|chromosome 20 open reading frame 24##AF274936|C20orf24|55969|chromosome 20 open reading frame 24##S83364|C20orf24|55969|chromosome 20 open reading frame 24	0.957309	0.0	denovo_WM_7:-40:0.269	denovo_WM_7:-41:0.688
chr15	100042670	100042842	reg1004610.p2	7.721	+	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	-251114	+	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	-251340	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	-253050	-	NM_001130926 NM_001130927 NM_001171894 NM_005587 TSC_hg19_v1_chr15_+_100106173 AB208985	63397	+	TSC_hg19_v1_chr15_+_100106196 AL831995 AK294207	63438	+	BC013437 TSC_hg19_v1_chr15_+_100106231 AK291835 X68504	63479	+	BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##NM_001130926|MEF2A|4205|myocyte enhancer factor 2A##NM_001130927|MEF2A|4205|myocyte enhancer factor 2A##NM_001171894|MEF2A|4205|myocyte enhancer factor 2A##NM_005587|MEF2A|4205|myocyte enhancer factor 2A##AB208985|MEF2A|4205|myocyte enhancer factor 2A##AL831995|MEF2A|4205|myocyte enhancer factor 2A##AK294207|MEF2A|4205|myocyte enhancer factor 2A##BC013437|MEF2A|4205|myocyte enhancer factor 2A##AK291835|MEF2A|4205|myocyte enhancer factor 2A##X68504|MEF2A|4205|myocyte enhancer factor 2A	0.980929	0.0	denovo_WM_7:-3:0.234	denovo_WM_7:-4:0.236	denovo_WM_7:-5:0.233	denovo_WM_7:-6:0.233
chr18	67873097	67873250	reg1003240.p2	7.720	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	-235	-	GU935335 GU935336 U56102 NM_006566	-248978	-	AK313199 TSC_hg19_v1_chr18_-_67615110	-258074	-	NM_004232 TSC_hg19_v1_chr18_+_67956194	82994	+	TSC_hg19_v1_chr18_+_67956280 BC020082	83088	+	BC110843 BC035789 TSC_hg19_v1_chr18_-_70210781 AK291364	2337602	-	BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule##AK313199|CD226|10666|CD226 molecule##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC020082|SOCS6|9306|suppressor of cytokine signaling 6##BC110843|CBLN2|147381|cerebellin 2 precursor##BC035789|CBLN2|147381|cerebellin 2 precursor##AK291364|CBLN2|147381|cerebellin 2 precursor	0.294453	0.0	
chr19	38982965	38983108	reg1004603.p1	7.716	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-58692	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-66164	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-89135	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	125552	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	126677	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	126780	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.996962	0.0	denovo_WM_7:-25:0.313	denovo_WM_7:-26:0.313	denovo_WM_7:-27:0.313
chr18	5975246	5975426	reg1003952.p2	7.714	+	NM_001080209	-83234	-	TSC_hg19_v1_chr18_-_5630663 BC008377	-344689	-	AF069072 AB023204 NM_012307 TSC_hg19_v1_chr18_-_5543997 AK128531	-431348	-	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	439579	-	NM_001243517	536078	+	NM_001010000 BX648684 AK308259 AK302026	859129	+	NM_001080209|TMEM200C|645369|transmembrane protein 200C##BC008377|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AF069072|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AB023204|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##NM_012307|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AK128531|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28	0.156145	0.0	
chr21	32402862	32402962	reg1004377.p1	7.714	+	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-149054	-	AJ457063 AB096962 NM_181606	-200924	-	BC130397 BC133033 AB096961 AJ457064 NM_175857	-217348	-	AB096964 NM_001099219	7882	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	528446	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	629095	+	AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##BC130397|KRTAP8-1|337879|keratin associated protein 8-1##BC133033|KRTAP8-1|337879|keratin associated protein 8-1##AB096961|KRTAP8-1|337879|keratin associated protein 8-1##AJ457064|KRTAP8-1|337879|keratin associated protein 8-1##NM_175857|KRTAP8-1|337879|keratin associated protein 8-1##AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble	0.0	0.0	
chr4	144303871	144304011	reg1003879.p1	7.714	+	NM_002039 NM_207123 AK289767 BC064848	-45926	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	-197816	+	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	-197877	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	130787	+	AB384709 TSC_hg19_v1_chr4_+_144435139	131173	+	TSC_hg19_v1_chr4_+_144480613 AX721285 AX721289 BC025996	176675	+	NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC025996|GUSBP5|441046|glucuronidase, beta pseudogene 5	0.32297	0.0	denovo_WM_7:-8:0.210
chr7	7812446	7812626	reg1004056.p2	7.714	+	BC009868 NM_002947	-54299	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-132163	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-132449	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	195897	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	489180	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	489255	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	1.017459	0.0	denovo_WM_7:-1:0.888
chr10	61636068	61636194	reg1004127.p1	7.713	+	AK126643 TSC_hg19_v1_chr10_-_61469461 NM_194298	-166407	-	AK299924 NM_001143773	-513471	-	CU687880 DQ894404 EU176262 AK294805 AK289796 TSC_hg19_v1_chr10_-_61122308 BC036453 AK316542 BC064431 NM_001001971 NM_001166698 NM_198215	-513846	-	AB590767 TSC_hg19_v1_chr10_-_61666205 S72869	30070	-	D90075 BC064391 TSC_hg19_v1_chr10_-_61666249 BC036757 BC022284 AK292593 NM_005436	30193	-	AK292927 AK092527 NM_001149	264585	-	AK126643|LOC100129721|100129721|uncharacterized LOC100129721##NM_194298|SLC16A9|220963|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)##AK299924|FAM13C|220965|family with sequence similarity 13, member C##NM_001143773|FAM13C|220965|family with sequence similarity 13, member C##DQ894404|FAM13C|220965|family with sequence similarity 13, member C##EU176262|FAM13C|220965|family with sequence similarity 13, member C##AK294805|FAM13C|220965|family with sequence similarity 13, member C##AK289796|FAM13C|220965|family with sequence similarity 13, member C##BC036453|FAM13C|220965|family with sequence similarity 13, member C##AK316542|FAM13C|220965|family with sequence similarity 13, member C##BC064431|FAM13C|220965|family with sequence similarity 13, member C##NM_001001971|FAM13C|220965|family with sequence similarity 13, member C##NM_001166698|FAM13C|220965|family with sequence similarity 13, member C##NM_198215|FAM13C|220965|family with sequence similarity 13, member C##S72869|CCDC6|8030|coiled-coil domain containing 6##BC064391|CCDC6|8030|coiled-coil domain containing 6##BC036757|CCDC6|8030|coiled-coil domain containing 6##BC022284|CCDC6|8030|coiled-coil domain containing 6##AK292593|CCDC6|8030|coiled-coil domain containing 6##NM_005436|CCDC6|8030|coiled-coil domain containing 6##AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	0.0	0.0	
chr11	33033162	33033318	reg1004714.p2	7.713	+	TSC_hg19_v1_chr11_+_32914677 BC112935 NM_001076786	-118665	+	TSC_hg19_v1_chr11_+_32851476 BC010052 NM_024081 BC063393 AF326351	-181690	+	BC146800 AK131470 NM_001008391 BC062749	-217063	-	TSC_hg19_v1_chr11_+_33037423 BC030970 NM_001077242 AK294934 BC011446 AJ245600 AK295960 EU446553 CU689058	4208	+	AF447588 NM_139160	4487	+	NM_018393 AK090646 TSC_hg19_v1_chr11_+_33061117 BC041696	27842	+	BC112935|QSER1|79832|glutamine and serine rich 1##NM_001076786|QSER1|79832|glutamine and serine rich 1##BC010052|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##NM_024081|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##BC063393|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##AF326351|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##BC146800|CCDC73|493860|coiled-coil domain containing 73##AK131470|CCDC73|493860|coiled-coil domain containing 73##NM_001008391|CCDC73|493860|coiled-coil domain containing 73##BC062749|CCDC73|493860|coiled-coil domain containing 73##BC030970|DEPDC7|91614|DEP domain containing 7##NM_001077242|DEPDC7|91614|DEP domain containing 7##AK294934|DEPDC7|91614|DEP domain containing 7##BC011446|DEPDC7|91614|DEP domain containing 7##AJ245600|DEPDC7|91614|DEP domain containing 7##AK295960|DEPDC7|91614|DEP domain containing 7##EU446553|DEPDC7|91614|DEP domain containing 7##AF447588|DEPDC7|91614|DEP domain containing 7##NM_139160|DEPDC7|91614|DEP domain containing 7##NM_018393|TCP11L1|55346|t-complex 11 (mouse)-like 1##AK090646|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC041696|TCP11L1|55346|t-complex 11 (mouse)-like 1	0.0	0.0	
chr5	158103802	158103970	reg1004514.p1	7.713	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-817796	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-919506	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-933146	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	422571	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	422856	-	AK304228 NM_001199382	530762	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.592293	0.0	denovo_WM_7:-3:0.592
chr1	151072380	151072531	reg1005206.p1	7.710	+	BC027033 NM_144618 TSC_hg19_v1_chr1_+_151043238 AK092230 AX747418 AK313606 AK301882	-29271	+	TSC_hg19_v1_chr1_+_151032908 BC019253	-39546	+	AK057755 TSC_hg19_v1_chr1_+_151032886 BC007079 BC008445	-39569	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	46592	-	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	56675	+	TSC_hg19_v1_chr1_-_151138337 BX647911 NM_212551 AK298706 NM_001136543	65921	-	BC027033|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##NM_144618|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK092230|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK313606|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK301882|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##BC019253|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AK057755|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC007079|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC008445|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BX647911|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_212551|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##AK298706|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001136543|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1	0.0	0.994414	CTCF.p2:-2:0.994
chr6_qbl_hap6	2467926	2468050	reg1004790.p1	7.710	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999297	0.0	
chr5	972757	972904	reg1004751.p1	7.709	+	TSC_hg19_v1_chr5_+_892974 NM_001166260 NM_004237 AK310376 BC000404 BC019294 U96131 AB527502 EU446745 CU674196 CR456744 L40384	-79798	+	TSC_hg19_v1_chr5_-_892920 AK299157 NM_023924	-79896	-	AK023503 TSC_hg19_v1_chr5_-_892917	-79915	-	TSC_hg19_v1_chr5_-_997422 AK126199 NM_001242737	24605	-	TSC_hg19_v1_chr5_+_1008916 BC012176 AF358137 AB062887 NM_033120	36203	+	CU675797 AF105365 TSC_hg19_v1_chr5_-_1112151 AK302856 BC098390 BC007760 BC018982 NM_006598	139327	-	NM_001166260|TRIP13|9319|thyroid hormone receptor interactor 13##NM_004237|TRIP13|9319|thyroid hormone receptor interactor 13##AK310376|TRIP13|9319|thyroid hormone receptor interactor 13##BC000404|TRIP13|9319|thyroid hormone receptor interactor 13##BC019294|TRIP13|9319|thyroid hormone receptor interactor 13##U96131|TRIP13|9319|thyroid hormone receptor interactor 13##EU446745|TRIP13|9319|thyroid hormone receptor interactor 13##CR456744|TRIP13|9319|thyroid hormone receptor interactor 13##L40384|TRIP13|9319|thyroid hormone receptor interactor 13##AK299157|BRD9|65980|bromodomain containing 9##NM_023924|BRD9|65980|bromodomain containing 9##AK023503|BRD9|65980|bromodomain containing 9##AK126199|LOC100506688|100506688|uncharacterized LOC100506688##NM_001242737|LOC100506688|100506688|uncharacterized LOC100506688##BC012176|NKD2|85409|naked cuticle homolog 2 (Drosophila)##AF358137|NKD2|85409|naked cuticle homolog 2 (Drosophila)##AB062887|NKD2|85409|naked cuticle homolog 2 (Drosophila)##NM_033120|NKD2|85409|naked cuticle homolog 2 (Drosophila)##AF105365|SLC12A7|10723|solute carrier family 12 (potassium/chloride transporters), member 7##AK302856|SLC12A7|10723|solute carrier family 12 (potassium/chloride transporters), member 7##BC098390|SLC12A7|10723|solute carrier family 12 (potassium/chloride transporters), member 7##BC007760|SLC12A7|10723|solute carrier family 12 (potassium/chloride transporters), member 7##BC018982|SLC12A7|10723|solute carrier family 12 (potassium/chloride transporters), member 7##NM_006598|SLC12A7|10723|solute carrier family 12 (potassium/chloride transporters), member 7	0.98445	0.0	denovo_WM_7:-33:0.714
chr10	98100135	98100274	reg1003253.p2	7.706	+	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	-36036	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-68961	-	BC109045 BC109046 TSC_hg19_v1_chr10_+_97889812 AK095317 BC030967	-210462	+	AF367761 NM_001040102 NM_001040103 NM_033207	18870	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	173359	-	AK075451 TSC_hg19_v1_chr10_-_98290333	190133	-	NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC109045|ZNF518A|9849|zinc finger protein 518A##BC109046|ZNF518A|9849|zinc finger protein 518A##BC030967|ZNF518A|9849|zinc finger protein 518A##AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2##AK075451|TM9SF3|56889|transmembrane 9 superfamily member 3	1.960731	0.725917	CTCF.p2:40:0.726	denovo_WM_7:-60:0.943
chr17	29465538	29465693	reg1004543.p1	7.705	+	TSC_hg19_v1_chr17_+_29421994 AK289936 M82814 M89914 BC144643 D42072	-43506	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	-43671	+	TSC_hg19_v1_chr17_+_29298062 AK226030 BC082262 AK312979 AK122646 AK122709 AB470605 AY598332	-167475	+	X51694 BC018050 AK222663 AK312445 NM_002544	158699	-	AK312822 TSC_hg19_v1_chr17_-_29641073	175456	-	TSC_hg19_v1_chr17_-_29641092 BC005926	175474	-	AK289936|NF1|4763|neurofibromin 1##M82814|NF1|4763|neurofibromin 1##M89914|NF1|4763|neurofibromin 1##BC144643|NF1|4763|neurofibromin 1##D42072|NF1|4763|neurofibromin 1##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1##AK226030|RNF135|84282|ring finger protein 135##BC082262|RNF135|84282|ring finger protein 135##AK312979|RNF135|84282|ring finger protein 135##AK122646|RNF135|84282|ring finger protein 135##AK122709|RNF135|84282|ring finger protein 135##AB470605|RNF135|84282|ring finger protein 135##AY598332|RNF135|84282|ring finger protein 135##X51694|OMG|4974|oligodendrocyte myelin glycoprotein##BC018050|OMG|4974|oligodendrocyte myelin glycoprotein##AK222663|OMG|4974|oligodendrocyte myelin glycoprotein##AK312445|OMG|4974|oligodendrocyte myelin glycoprotein##NM_002544|OMG|4974|oligodendrocyte myelin glycoprotein##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B	0.996797	0.0	denovo_WM_7:6:0.985
chr9	98572559	98572658	reg1003898.p2	7.705	+	AB189436 AB189437 NM_001083602 NM_001083603 BC043542	-293316	-	AB212827 AB212828 AB239329 TSC_hg19_v1_chr9_-_98279070	-293604	-	NM_000264 TSC_hg19_v1_chr9_-_98270933	-301724	-	TSC_hg19_v1_chr9_-_98637744 AF170307	65144	-	TSC_hg19_v1_chr9_-_98637839 AK092137 AX747374	65245	-	NM_001010895 TSC_hg19_v1_chr9_+_98637942 AK129624 AK308409 AL389953	65333	+	AB189436|PTCH1|5727|patched 1##AB189437|PTCH1|5727|patched 1##NM_001083602|PTCH1|5727|patched 1##NM_001083603|PTCH1|5727|patched 1##BC043542|PTCH1|5727|patched 1##AB212827|PTCH1|5727|patched 1##AB212828|PTCH1|5727|patched 1##AB239329|PTCH1|5727|patched 1##NM_000264|PTCH1|5727|patched 1##AF170307|LINC00476|100128782|long intergenic non-protein coding RNA 476##AK092137|LINC00476|100128782|long intergenic non-protein coding RNA 476##NM_001010895|C9orf102|375748|chromosome 9 open reading frame 102##AK308409|C9orf102|375748|chromosome 9 open reading frame 102##AL389953|C9orf102|375748|chromosome 9 open reading frame 102	0.99503	0.0	
chr5	95997121	95997282	reg1002648.p2	7.704	+	AB208874 AB590528 BC130295 BC136486 TSC_hg19_v1_chr5_-_95768927 X64810 M90753 BC031211 NM_000439	-228379	-	AK303888 NM_001177875	-229339	-	AK308575 NM_001177876	-248513	-	TSC_hg19_v1_chr5_+_95997755 NM_001190442 AB208816	550	+	TSC_hg19_v1_chr5_+_95997965 BC016066 NM_001042440	727	+	BC013579 TSC_hg19_v1_chr5_+_95998220	994	+	AB208874|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##BC130295|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##BC136486|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##X64810|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##M90753|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##BC031211|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_000439|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##AK303888|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177875|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001190442|CAST|831|calpastatin##AB208816|CAST|831|calpastatin##BC016066|CAST|831|calpastatin##NM_001042440|CAST|831|calpastatin##BC013579|CAST|831|calpastatin	0.990508	0.0	
chr6	16731608	16731788	reg1003950.p1	7.704	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-492847	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-588388	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-602261	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	29999	-	NM_001190766	370790	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	550156	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	2.982955	0.0	denovo_WM_7:-4:0.440	denovo_WM_7:-5:0.555	denovo_WM_7:9:0.477	denovo_WM_7:10:0.518	denovo_WM_7:-20:0.978
chr1	192514372	192514458	reg1002667.p1	7.703	+	AY643711 NM_001039152	-228294	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-386812	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-2067680	-	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	30493	+	NM_002927 NM_144766 AF030107 BC016667	90869	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	263769	+	AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa	0.046674	0.0	
chr12	56308980	56309132	reg1004205.p1	7.702	+	CU690648 U38431 U38321 U37791 Y08622 BC050368 X92521 TSC_hg19_v1_chr12_-_56236719 AK303202 AK297999 BC030206 NM_002429 AK225939	-72371	-	TSC_hg19_v1_chr12_+_56224684 BC072431 BX648969 AK057179	-84387	+	TSC_hg19_v1_chr12_-_56224312 AK291222	-84733	-	AK096922 NM_001143853	11845	-	AJ459406 TSC_hg19_v1_chr12_-_56321568	12500	-	BC009627 BC014976 TSC_hg19_v1_chr12_-_56321675	12614	-	U38431|MMP19|4327|matrix metallopeptidase 19##U38321|MMP19|4327|matrix metallopeptidase 19##U37791|MMP19|4327|matrix metallopeptidase 19##Y08622|MMP19|4327|matrix metallopeptidase 19##BC050368|MMP19|4327|matrix metallopeptidase 19##X92521|MMP19|4327|matrix metallopeptidase 19##AK303202|MMP19|4327|matrix metallopeptidase 19##AK297999|MMP19|4327|matrix metallopeptidase 19##BC030206|MMP19|4327|matrix metallopeptidase 19##NM_002429|MMP19|4327|matrix metallopeptidase 19##AK225939|MMP19|4327|matrix metallopeptidase 19##BC072431|TMEM198B|440104|transmembrane protein 198B, pseudogene##BX648969|TMEM198B|440104|transmembrane protein 198B, pseudogene##AK057179|TMEM198B|440104|transmembrane protein 198B, pseudogene##AK291222|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AK096922|WIBG|84305|within bgcn homolog (Drosophila)##NM_001143853|WIBG|84305|within bgcn homolog (Drosophila)##AJ459406|WIBG|84305|within bgcn homolog (Drosophila)##BC009627|WIBG|84305|within bgcn homolog (Drosophila)##BC014976|WIBG|84305|within bgcn homolog (Drosophila)	0.999829	0.0	
chr17	57701739	57701871	reg1004628.p1	7.702	+	TSC_hg19_v1_chr17_+_57697403 AB587306	-4360	+	TSC_hg19_v1_chr17_+_57697289 AK127134 D21260	-4504	+	TSC_hg19_v1_chr17_+_57697282 BC051800	-4525	+	X55878 TSC_hg19_v1_chr17_+_57743577	41734	+	TSC_hg19_v1_chr17_-_57784773 BC006807 BC017457 AK057033 AF151905 NM_016077	83000	-	NM_030938 TSC_hg19_v1_chr17_+_57784931	83095	+	AK127134|CLTC|1213|clathrin, heavy chain (Hc)##D21260|CLTC|1213|clathrin, heavy chain (Hc)##BC051800|CLTC|1213|clathrin, heavy chain (Hc)##X55878|CLTC|1213|clathrin, heavy chain (Hc)##BC006807|PTRH2|51651|peptidyl-tRNA hydrolase 2##BC017457|PTRH2|51651|peptidyl-tRNA hydrolase 2##AK057033|PTRH2|51651|peptidyl-tRNA hydrolase 2##AF151905|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_016077|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_030938|VMP1|81671|vacuole membrane protein 1	0.999662	0.0	
chr19	44258096	44258178	reg1002715.p2	7.702	+	BC033853 NM_019612 BC066939	-37912	+	NM_001005376 NM_001005377 NM_002659	-83640	-	AF257789 CR456952 AB464026 DQ893017 DQ896262 M83246 TSC_hg19_v1_chr19_-_44174320 AK290774 AY029180 X51675 X74039 BC002788	-83834	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	883	-	TSC_hg19_v1_chr19_-_44259074 AK022948	956	-	TSC_hg19_v1_chr19_-_44259117 NM_019108	991	-	BC033853|IRGC|56269|immunity-related GTPase family, cinema##NM_019612|IRGC|56269|immunity-related GTPase family, cinema##BC066939|IRGC|56269|immunity-related GTPase family, cinema##NM_001005376|PLAUR|5329|plasminogen activator, urokinase receptor##NM_001005377|PLAUR|5329|plasminogen activator, urokinase receptor##NM_002659|PLAUR|5329|plasminogen activator, urokinase receptor##AF257789|PLAUR|5329|plasminogen activator, urokinase receptor##CR456952|PLAUR|5329|plasminogen activator, urokinase receptor##DQ893017|PLAUR|5329|plasminogen activator, urokinase receptor##DQ896262|PLAUR|5329|plasminogen activator, urokinase receptor##M83246|PLAUR|5329|plasminogen activator, urokinase receptor##AK290774|PLAUR|5329|plasminogen activator, urokinase receptor##AY029180|PLAUR|5329|plasminogen activator, urokinase receptor##X51675|PLAUR|5329|plasminogen activator, urokinase receptor##X74039|PLAUR|5329|plasminogen activator, urokinase receptor##BC002788|PLAUR|5329|plasminogen activator, urokinase receptor##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.998546	0.0	
chr7	6415220	6415400	reg1003323.p1	7.702	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	-1083	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-26800	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-103079	-	TSC_hg19_v1_chr7_-_6474593 AK298910	59280	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	72229	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	72298	-	NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta	1.464155	0.0	denovo_WM_7:-2:0.326	denovo_WM_7:-5:0.447
chr19	16773128	16773248	reg1003435.p1	7.701	+	TSC_hg19_v1_chr19_+_16771949 AK025981 NM_024074 AK292764 BC001195	-1222	+	TSC_hg19_v1_chr19_-_16770956 NM_024104	-2226	-	TSC_hg19_v1_chr19_-_16770944 AK025602 BC069279 BX648276	-2259	-	BX648940 NM_001007525 CR749794	57600	+	TSC_hg19_v1_chr19_+_16940221 NM_015260 AB014600 AY706204 BC063531 BC110821 AB463259 BC025026	167014	+	TSC_hg19_v1_chr19_+_16999830 AF055917 NM_003950	226637	+	AK025981|TMEM38A|79041|transmembrane protein 38A##NM_024074|TMEM38A|79041|transmembrane protein 38A##AK292764|TMEM38A|79041|transmembrane protein 38A##BC001195|TMEM38A|79041|transmembrane protein 38A##NM_024104|C19orf42|79086|chromosome 19 open reading frame 42##AK025602|C19orf42|79086|chromosome 19 open reading frame 42##BC069279|C19orf42|79086|chromosome 19 open reading frame 42##BX648276|C19orf42|79086|chromosome 19 open reading frame 42##BX648940|NWD1|284434|NACHT and WD repeat domain containing 1##NM_001007525|NWD1|284434|NACHT and WD repeat domain containing 1##CR749794|NWD1|284434|NACHT and WD repeat domain containing 1##NM_015260|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AB014600|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AY706204|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC063531|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC110821|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC025026|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AF055917|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##NM_003950|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3	1.009716	0.0	
chr2	230933599	230933726	reg1005669.p1	7.700	+	TSC_hg19_v1_chr2_+_230787218 BC017869 BC022538 NM_174899 BC033935 AK289655 AK309702	-146445	+	TSC_hg19_v1_chr2_-_230786712 AK310971	-146913	-	BC113891 BC114556 TSC_hg19_v1_chr2_-_230786683 D28476 NM_004238 BC037956 AK302468	-147001	-	BC065524 BC034382 AK055356 TSC_hg19_v1_chr2_-_230933641 NM_152527	4	-	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	151053	-	AK301097 NM_001185015	156781	-	BC017869|FBXO36|130888|F-box protein 36##BC022538|FBXO36|130888|F-box protein 36##NM_174899|FBXO36|130888|F-box protein 36##BC033935|FBXO36|130888|F-box protein 36##AK289655|FBXO36|130888|F-box protein 36##AK309702|FBXO36|130888|F-box protein 36##AK310971|TRIP12|9320|thyroid hormone receptor interactor 12##BC113891|TRIP12|9320|thyroid hormone receptor interactor 12##BC114556|TRIP12|9320|thyroid hormone receptor interactor 12##D28476|TRIP12|9320|thyroid hormone receptor interactor 12##NM_004238|TRIP12|9320|thyroid hormone receptor interactor 12##BC037956|TRIP12|9320|thyroid hormone receptor interactor 12##AK302468|TRIP12|9320|thyroid hormone receptor interactor 12##BC065524|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC034382|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AK055356|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##NM_152527|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein	0.0	0.0	
chr20	291299	291479	reg1002760.p2	7.699	+	TSC_hg19_v1_chr20_+_278213 BC069238 NM_033089 AK025768 BC107584 BC036469	-13180	+	AK302223 TSC_hg19_v1_chr20_-_271367 BC134417 BC137450 BC144648 BC144649 AK097394 NM_080571 NM_153269	-20025	-	TSC_hg19_v1_chr20_-_271080 AK091924 AX747257 AK304526 BX640715 BC051762	-20315	-	TSC_hg19_v1_chr20_+_306226 BC067361 NM_006943 U35612 BC028103	14847	+	TSC_hg19_v1_chr20_+_327371 NM_024958 AK290527	36016	+	TSC_hg19_v1_chr20_+_327754 AK026982	36360	+	BC069238|ZCCHC3|85364|zinc finger, CCHC domain containing 3##NM_033089|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK025768|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC107584|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC036469|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK302223|C20orf96|140680|chromosome 20 open reading frame 96##BC134417|C20orf96|140680|chromosome 20 open reading frame 96##BC137450|C20orf96|140680|chromosome 20 open reading frame 96##BC144648|C20orf96|140680|chromosome 20 open reading frame 96##BC144649|C20orf96|140680|chromosome 20 open reading frame 96##AK097394|C20orf96|140680|chromosome 20 open reading frame 96##NM_080571|C20orf96|140680|chromosome 20 open reading frame 96##NM_153269|C20orf96|140680|chromosome 20 open reading frame 96##AK091924|C20orf96|140680|chromosome 20 open reading frame 96##AK304526|C20orf96|140680|chromosome 20 open reading frame 96##BX640715|C20orf96|140680|chromosome 20 open reading frame 96##BC051762|C20orf96|140680|chromosome 20 open reading frame 96##BC067361|SOX12|6666|SRY (sex determining region Y)-box 12##NM_006943|SOX12|6666|SRY (sex determining region Y)-box 12##U35612|SOX12|6666|SRY (sex determining region Y)-box 12##BC028103|SOX12|6666|SRY (sex determining region Y)-box 12##NM_024958|NRSN2|80023|neurensin 2##AK290527|NRSN2|80023|neurensin 2##AK026982|NRSN2|80023|neurensin 2	0.992391	0.0	denovo_WM_7:-15:0.313	denovo_WM_7:-16:0.313	denovo_WM_7:-17:0.313
chr10	125974437	125974617	reg1000617.p2	7.698	+	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	-121374	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	-122628	-	BC137492 BC146862 AY358565 NM_198148	-323031	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	132946	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	132991	-	NM_001146340 TSC_hg19_v1_chr10_-_126138606	164050	-	BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##NM_001146340|NKX1-2|390010|NK1 homeobox 2	0.0	0.0	
chr19	48971960	48972088	reg1004031.p1	7.697	+	BC035918 NM_170720	-7519	+	AF081466 NM_013348	-13259	+	TSC_hg19_v1_chr19_+_48949248 AF337808 BC002440 EF011614 AL713729 CU677962 DQ892630 DQ895868 AB075822 BC036281 BC047351	-22765	+	NM_004228 NM_017457 TSC_hg19_v1_chr19_+_48972572	494	+	TSC_hg19_v1_chr19_+_48972625 AB209573 BC038713 AK292405 U70728 AK299590 BC004361 AB528907 DQ892565 DQ896856 X99753	645	+	AB384647 TSC_hg19_v1_chr19_-_49014849	42816	-	BC035918|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_170720|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AF081466|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_013348|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AF337808|GRWD1|83743|glutamate-rich WD repeat containing 1##BC002440|GRWD1|83743|glutamate-rich WD repeat containing 1##EF011614|GRWD1|83743|glutamate-rich WD repeat containing 1##AL713729|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ892630|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ895868|GRWD1|83743|glutamate-rich WD repeat containing 1##BC036281|GRWD1|83743|glutamate-rich WD repeat containing 1##BC047351|GRWD1|83743|glutamate-rich WD repeat containing 1##NM_004228|CYTH2|9266|cytohesin 2##NM_017457|CYTH2|9266|cytohesin 2##AB209573|CYTH2|9266|cytohesin 2##BC038713|CYTH2|9266|cytohesin 2##AK292405|CYTH2|9266|cytohesin 2##U70728|CYTH2|9266|cytohesin 2##AK299590|CYTH2|9266|cytohesin 2##BC004361|CYTH2|9266|cytohesin 2##DQ892565|CYTH2|9266|cytohesin 2##DQ896856|CYTH2|9266|cytohesin 2##X99753|CYTH2|9266|cytohesin 2	0.994911	0.0	denovo_WM_7:-89:0.437	denovo_WM_7:-90:0.437
chr13	102279473	102279640	reg1004538.p1	7.696	+	TSC_hg19_v1_chr13_+_102104985 AF072752 NM_004791 AK095875 AB008375 AK297744 BC036788 AK291340 AK308194	-174561	+	TSC_hg19_v1_chr13_-_102068838 BC028390	-210716	-	AY141972 AK094669 BC012128 NM_052867 TSC_hg19_v1_chr13_-_102068817	-210795	-	NM_004115 U66200	289438	-	AB590819 BC100920 BC100921 BC100922 AY188178 NM_175929	774519	-	NM_003291 TSC_hg19_v1_chr13_+_103249354 BC039905 M73047 AK304313 BC024905 CU691800	969780	+	AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC028390|NALCN|259232|sodium leak channel, non-selective##AY141972|NALCN|259232|sodium leak channel, non-selective##AK094669|NALCN|259232|sodium leak channel, non-selective##BC012128|NALCN|259232|sodium leak channel, non-selective##NM_052867|NALCN|259232|sodium leak channel, non-selective##NM_004115|FGF14|2259|fibroblast growth factor 14##U66200|FGF14|2259|fibroblast growth factor 14##BC100920|FGF14|2259|fibroblast growth factor 14##BC100921|FGF14|2259|fibroblast growth factor 14##BC100922|FGF14|2259|fibroblast growth factor 14##AY188178|FGF14|2259|fibroblast growth factor 14##NM_175929|FGF14|2259|fibroblast growth factor 14##NM_003291|TPP2|7174|tripeptidyl peptidase II##BC039905|TPP2|7174|tripeptidyl peptidase II##M73047|TPP2|7174|tripeptidyl peptidase II##AK304313|TPP2|7174|tripeptidyl peptidase II##BC024905|TPP2|7174|tripeptidyl peptidase II	0.343968	0.0	
chr13	45872120	45872249	reg1004284.p1	7.696	+	AK290675 NM_198404	-97010	-	TSC_hg19_v1_chr13_+_45694647 BC001771 X16901 AB527978 EU831971 EU832064 BT019525 X59745	-177466	+	TSC_hg19_v1_chr13_+_45694638 NM_004128 AK291545	-177570	+	TSC_hg19_v1_chr13_-_45914246 L13806 CU692614	42098	-	AY334563 CR457036 CU680324 TSC_hg19_v1_chr13_-_45915253	43053	-	BC012431 TSC_hg19_v1_chr13_-_45915280 X64899 BC040008 NM_003295 X16064 AF072098 BC007842 BC003352 BC052333	43108	-	AK290675|KCTD4|386618|potassium channel tetramerisation domain containing 4##NM_198404|KCTD4|386618|potassium channel tetramerisation domain containing 4##BC001771|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##X16901|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##EU831971|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##EU832064|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##BT019525|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##X59745|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##NM_004128|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##AK291545|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##L13806|TPT1|7178|tumor protein, translationally-controlled 1##AY334563|TPT1|7178|tumor protein, translationally-controlled 1##CR457036|TPT1|7178|tumor protein, translationally-controlled 1##BC012431|TPT1|7178|tumor protein, translationally-controlled 1##X64899|TPT1|7178|tumor protein, translationally-controlled 1##BC040008|TPT1|7178|tumor protein, translationally-controlled 1##NM_003295|TPT1|7178|tumor protein, translationally-controlled 1##X16064|TPT1|7178|tumor protein, translationally-controlled 1##BC007842|TPT1|7178|tumor protein, translationally-controlled 1##BC003352|TPT1|7178|tumor protein, translationally-controlled 1##BC052333|TPT1|7178|tumor protein, translationally-controlled 1	0.976299	0.0	denovo_WM_7:-5:0.642	denovo_WM_7:-6:0.320
chr14	55897006	55897147	reg1004116.p1	7.696	+	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	-18520	-	NM_152231	-158205	+	TSC_hg19_v1_chr14_+_55738114 BX248268 BC095482	-158918	+	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	10221	-	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	149740	-	TSC_hg19_v1_chr14_+_56046963 NM_001079521 NM_001079522 NM_004986 NM_182926 BC066337 D13629 AK302797 BC050555 BC058736 Z22551 AY264265 BC112337	150026	+	BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_152231|FBXO34|55030|F-box protein 34##BX248268|FBXO34|55030|F-box protein 34##BC095482|FBXO34|55030|F-box protein 34##AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##NM_001079521|KTN1|3895|kinectin 1 (kinesin receptor)##NM_001079522|KTN1|3895|kinectin 1 (kinesin receptor)##NM_004986|KTN1|3895|kinectin 1 (kinesin receptor)##NM_182926|KTN1|3895|kinectin 1 (kinesin receptor)##BC066337|KTN1|3895|kinectin 1 (kinesin receptor)##D13629|KTN1|3895|kinectin 1 (kinesin receptor)##AK302797|KTN1|3895|kinectin 1 (kinesin receptor)##BC050555|KTN1|3895|kinectin 1 (kinesin receptor)##BC058736|KTN1|3895|kinectin 1 (kinesin receptor)##Z22551|KTN1|3895|kinectin 1 (kinesin receptor)##AY264265|KTN1|3895|kinectin 1 (kinesin receptor)##BC112337|KTN1|3895|kinectin 1 (kinesin receptor)	1.078923	0.09879	
chr4	39184761	39184884	reg1004083.p2	7.696	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	-727	+	AK289785 NM_015990 NM_199039	-120971	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-138384	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	183130	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	223662	+	TSC_hg19_v1_chr4_+_39408557 BC104871 BC113653 BC143575	223727	+	AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta##BC104871|KLB|152831|klotho beta##BC113653|KLB|152831|klotho beta##BC143575|KLB|152831|klotho beta	0.999896	0.0	
chr1	33722831	33723010	reg1004881.p2	7.695	+	TSC_hg19_v1_chr1_+_33722167 NM_152493	-755	+	TSC_hg19_v1_chr1_-_33647643 AX775827 AX775829 AX776017 AK122896 NM_018207	-75272	-	TSC_hg19_v1_chr1_+_33546755 BC028128 NM_052998 AK095127 AL832640 AK057051 AK315677 AY325129 BC010449	-176187	+	TSC_hg19_v1_chr1_-_33813262 AK055807	90376	-	BC029269 TSC_hg19_v1_chr1_-_33815374 BC068573 BC092492 BC110863	92449	-	AK128821 TSC_hg19_v1_chr1_-_33815496 BC028396 BC018602	92533	-	NM_152493|ZNF362|149076|zinc finger protein 362##AK122896|TRIM62|55223|tripartite motif containing 62##NM_018207|TRIM62|55223|tripartite motif containing 62##BC028128|ADC|113451|arginine decarboxylase##NM_052998|ADC|113451|arginine decarboxylase##AK095127|ADC|113451|arginine decarboxylase##AL832640|ADC|113451|arginine decarboxylase##AK057051|ADC|113451|arginine decarboxylase##AK315677|ADC|113451|arginine decarboxylase##AY325129|ADC|113451|arginine decarboxylase##BC010449|ADC|113451|arginine decarboxylase##BC029269|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC068573|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC092492|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC110863|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##AK128821|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC028396|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC018602|PHC2|1912|polyhomeotic homolog 2 (Drosophila)	1.14027	0.0	denovo_WM_7:5:0.690
chr14	91962017	91962151	reg1001087.p2	7.695	+	TSC_hg19_v1_chr14_-_91884165 NM_001080414	-77909	-	TSC_hg19_v1_chr14_-_91884159 AF070587	-77936	-	BC098567 NM_003485	-241890	-	BC072409 AB095930 TSC_hg19_v1_chr14_-_91976621	14416	-	TSC_hg19_v1_chr14_-_91976644 NM_032560	14553	-	TSC_hg19_v1_chr14_-_91976823 AK000714 BC038932 BC022778	14723	-	NM_001080414|CCDC88C|440193|coiled-coil domain containing 88C##AF070587|CCDC88C|440193|coiled-coil domain containing 88C##BC098567|GPR68|8111|G protein-coupled receptor 68##NM_003485|GPR68|8111|G protein-coupled receptor 68##BC072409|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##AB095930|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##NM_032560|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##AK000714|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##BC038932|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##BC022778|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	0.995466	0.0	denovo_WM_7:-39:0.756
chr16	14215357	14215537	reg1000744.p2	7.695	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-50361	+	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	-201416	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-1219979	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	65071	+	BC047761 TSC_hg19_v1_chr16_+_14294209	78751	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	508581	-	AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK093577|MKL2|57496|MKL/myocardin-like 2##BC047761|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease	0.929515	0.0	denovo_WM_7:61:0.378
chr19	59086596	59086714	reg1003634.p1	7.694	+	TSC_hg19_v1_chr19_-_59084939 AF055077 AF055078 NM_003422 NM_198055	-1707	-	TSC_hg19_v1_chr19_-_59084737 BC007777	-1825	-	TSC_hg19_v1_chr19_-_59084686 BC053316	-1993	-	TSC_hg19_v1_chr19_+_59086818 BC065480 BC067232 BC043401 AK000827 AK311347 BC000766 BC001952	166	+	None	None	None	None	None	None	AF055077|MZF1|7593|myeloid zinc finger 1##AF055078|MZF1|7593|myeloid zinc finger 1##NM_003422|MZF1|7593|myeloid zinc finger 1##NM_198055|MZF1|7593|myeloid zinc finger 1##BC007777|MZF1|7593|myeloid zinc finger 1##BC053316|MZF1|7593|myeloid zinc finger 1##BC065480|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC067232|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC043401|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##AK000827|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##AK311347|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC000766|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC001952|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene	1.993327	0.0	denovo_WM_7:-86:0.960	denovo_WM_7:-101:0.320	denovo_WM_7:-102:0.332	denovo_WM_7:-103:0.345
chr2	102972570	102972719	reg1004138.p2	7.694	+	BC012580 BC030975 NM_003856 AK291578 AB029084	-18913	+	AB012701 NM_016232 AK313967 AK303389	-44653	+	AF284434 NM_003854 U49065 BC107064	-169196	+	BC069575 BC093975 BC093977 BC143403 BC143405 NM_003855 U43672 AB590640 AY192162	6464	+	AK300026 AF077346 NM_003853	62556	+	CR627411 NM_001011552	117117	+	BC012580|IL1RL1|9173|interleukin 1 receptor-like 1##BC030975|IL1RL1|9173|interleukin 1 receptor-like 1##NM_003856|IL1RL1|9173|interleukin 1 receptor-like 1##AK291578|IL1RL1|9173|interleukin 1 receptor-like 1##AB029084|IL1RL1|9173|interleukin 1 receptor-like 1##AB012701|IL1RL1|9173|interleukin 1 receptor-like 1##NM_016232|IL1RL1|9173|interleukin 1 receptor-like 1##AK313967|IL18R1|8809|interleukin 18 receptor 1##AK303389|IL1RL1|9173|interleukin 1 receptor-like 1##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2##BC069575|IL18R1|8809|interleukin 18 receptor 1##BC093975|IL18R1|8809|interleukin 18 receptor 1##BC093977|IL18R1|8809|interleukin 18 receptor 1##BC143403|IL18R1|8809|interleukin 18 receptor 1##BC143405|IL18R1|8809|interleukin 18 receptor 1##NM_003855|IL18R1|8809|interleukin 18 receptor 1##U43672|IL18R1|8809|interleukin 18 receptor 1##AY192162|IL18R1|8809|interleukin 18 receptor 1##AK300026|IL18RAP|8807|interleukin 18 receptor accessory protein##AF077346|IL18RAP|8807|interleukin 18 receptor accessory protein##NM_003853|IL18RAP|8807|interleukin 18 receptor accessory protein##CR627411|SLC9A4|389015|solute carrier family 9 (sodium/hydrogen exchanger), member 4##NM_001011552|SLC9A4|389015|solute carrier family 9 (sodium/hydrogen exchanger), member 4	0.9924	0.0	denovo_WM_7:31:0.812
chr9	45439236	45439417	reg1004238.p6	7.694	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1754483	+	NM_001145196	-1808597	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-2305839	-	TSC_hg19_v1_chr9_+_45441926 BC006438	2600	+	BC040528 NM_001113541 NM_015667	20070283	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21017975	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.994034	0.0	
chr12	110806059	110806238	reg1001089.p1	7.693	+	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-86780	+	TSC_hg19_v1_chr12_+_110719041 NM_001681 NM_170665	-87113	+	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	-243927	+	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	35291	-	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	35363	-	TSC_hg19_v1_chr12_-_110888079 AF006086	81937	-	M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001681|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_170665|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	1.988948	0.0	
chr17	27220379	27220559	reg1003128.p1	7.693	+	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	-38446	+	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	-50679	-	TSC_hg19_v1_chr17_-_27139467 AK095569	-81022	-	M60922 CU678570 AB528533 BC003683 TSC_hg19_v1_chr17_-_27224641	4139	-	TSC_hg19_v1_chr17_-_27224717 NM_004475	4243	-	AX795344 TSC_hg19_v1_chr17_-_27229986 AX795345 AX795340 AX795338 AX795342 BC015582 AX795337 AX795341 AX795339 AX795335 AX795336 AK296017 AX795346 AX795343 AY358566 NM_144683	9536	-	AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63##AK095569|C17orf63|55731|chromosome 17 open reading frame 63##M60922|FLOT2|2319|flotillin 2##BC003683|FLOT2|2319|flotillin 2##NM_004475|FLOT2|2319|flotillin 2##BC015582|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AK296017|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AY358566|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_144683|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13	0.992048	0.0	
chr5	118668796	118668891	reg1002881.p1	7.693	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-64326	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-64385	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-261678	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	22775	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	22895	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	119353	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.994316	0.0	denovo_WM_7:-36:0.372	denovo_WM_7:-37:0.585
chr22	41871904	41872032	reg1004902.p1	7.692	+	TSC_hg19_v1_chr22_+_41865120 AK293562 AK297213 AK301321 AK314845 AK302691 AK296260 BC026196 BC014092 NM_001098 U80040 CR456365 AB385022 CR536568 CU012932 CU013220 DQ893674 DQ895836	-6837	+	AB489147 CU012956 CU013244 EU446678 TSC_hg19_v1_chr22_-_41864681 BC075808 CR456398 BC007321 NM_032758	-7284	-	TSC_hg19_v1_chr22_-_41842881 NM_016272	-29029	-	TSC_hg19_v1_chr22_-_41940381 AB051452 BC088367 BC017248	68385	-	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	68532	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	85101	+	AK293562|ACO2|50|aconitase 2, mitochondrial##AK297213|ACO2|50|aconitase 2, mitochondrial##AK301321|ACO2|50|aconitase 2, mitochondrial##AK314845|ACO2|50|aconitase 2, mitochondrial##AK302691|ACO2|50|aconitase 2, mitochondrial##AK296260|ACO2|50|aconitase 2, mitochondrial##BC026196|ACO2|50|aconitase 2, mitochondrial##BC014092|ACO2|50|aconitase 2, mitochondrial##NM_001098|ACO2|50|aconitase 2, mitochondrial##U80040|ACO2|50|aconitase 2, mitochondrial##CR456365|ACO2|50|aconitase 2, mitochondrial##CR536568|ACO2|50|aconitase 2, mitochondrial##CU012932|ACO2|50|aconitase 2, mitochondrial##CU013220|ACO2|50|aconitase 2, mitochondrial##DQ893674|ACO2|50|aconitase 2, mitochondrial##DQ895836|ACO2|50|aconitase 2, mitochondrial##CU012956|PHF5A|84844|PHD finger protein 5A##CU013244|PHF5A|84844|PHD finger protein 5A##EU446678|PHF5A|84844|PHD finger protein 5A##BC075808|PHF5A|84844|PHD finger protein 5A##CR456398|PHF5A|84844|PHD finger protein 5A##BC007321|PHF5A|84844|PHD finger protein 5A##NM_032758|PHF5A|84844|PHD finger protein 5A##NM_016272|TOB2|10766|transducer of ERBB2, 2##AB051452|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC088367|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC017248|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding	0.998482	0.0	denovo_WM_7:-57:0.457	denovo_WM_7:-58:0.457
chr11	117206277	117206382	reg1002854.p2	7.691	+	AK302991 BC000602 TSC_hg19_v1_chr11_+_117198865 AK303067	-7498	+	TSC_hg19_v1_chr11_+_117198594 BX648682 NM_014956 BC054015	-7745	+	TSC_hg19_v1_chr11_-_117186973 AF324837 AB032975 AF201468 AF190725 BC036084 AK075049 BC065492 NM_012104 NM_138971 NM_138972 NM_138973	-19349	-	AB385430 AF304304 AF304305 TSC_hg19_v1_chr11_-_117667909 AF334384 AB032958	461524	-	TSC_hg19_v1_chr11_-_117667943 AF491813 NM_020693	461630	-	DQ786191 U50743 AF241236 AK296195 TSC_hg19_v1_chr11_-_117695460 AK096069 BC013289 NM_001680	489105	-	AK302991|CEP164|22897|centrosomal protein 164kDa##BC000602|CEP164|22897|centrosomal protein 164kDa##AK303067|CEP164|22897|centrosomal protein 164kDa##BX648682|CEP164|22897|centrosomal protein 164kDa##NM_014956|CEP164|22897|centrosomal protein 164kDa##BC054015|CEP164|22897|centrosomal protein 164kDa##AF324837|BACE1|23621|beta-site APP-cleaving enzyme 1##AB032975|BACE1|23621|beta-site APP-cleaving enzyme 1##AF201468|BACE1|23621|beta-site APP-cleaving enzyme 1##AF190725|BACE1|23621|beta-site APP-cleaving enzyme 1##BC036084|BACE1|23621|beta-site APP-cleaving enzyme 1##AK075049|BACE1|23621|beta-site APP-cleaving enzyme 1##BC065492|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_012104|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138971|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138972|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138973|BACE1|23621|beta-site APP-cleaving enzyme 1##AF304304|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF304305|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF334384|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AB032958|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF491813|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##NM_020693|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##DQ786191|FXYD2|486|FXYD domain containing ion transport regulator 2##U50743|FXYD2|486|FXYD domain containing ion transport regulator 2##AF241236|FXYD2|486|FXYD domain containing ion transport regulator 2##AK096069|FXYD2|486|FXYD domain containing ion transport regulator 2##BC013289|FXYD2|486|FXYD domain containing ion transport regulator 2##NM_001680|FXYD2|486|FXYD domain containing ion transport regulator 2	0.999073	0.0	denovo_WM_7:-22:0.235	denovo_WM_7:-23:0.235	denovo_WM_7:-24:0.235	denovo_WM_7:-25:0.235
chr10	48956731	48956849	reg1005051.p1	7.690	+	BC036539 AL050040 NM_001042363 NM_001042364 NM_001042365 NM_001042387 NM_001042395 NM_001042396 NM_001042397 NM_015605 CR933668 BX648913	-128848	-	AY704141 AY704142 AY704143 AY704144 AY704145 AY704147 AY704148 AY704150 AY704152 AY704153 AY704154 AY704156 AY704157 AY704158 NM_001042358 NM_001042359 NM_001042360 NM_001042361 NM_001042362 NM_001042390 NM_001042391 NM_001042392 NM_001042393 NM_001042394 AY753191	-129181	-	AB464105 AY704146 AY704149 AY704151 AY704155 BC093750 BC113473 BC143394 BC171725 NM_001042357 NM_001042389	-149867	-	BC146955 BC146968 BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556	251031	-	CR749241 NM_001018071	526136	-	TSC_hg19_v1_chr10_+_49514722 AK292523	557996	+	BC036539|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AL050040|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042363|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042364|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042365|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042387|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042395|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042396|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042397|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_015605|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##CR933668|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BX648913|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704141|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704142|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704143|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704144|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704145|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704147|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704148|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704150|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704152|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704153|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704154|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704156|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704157|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704158|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042358|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042359|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042360|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042361|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042362|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042390|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042391|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042392|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042393|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042394|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##AY753191|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704146|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704149|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704151|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704155|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC093750|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC113473|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC143394|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC171725|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042357|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042389|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##CR749241|FRMPD2|143162|FERM and PDZ domain containing 2##NM_001018071|FRMPD2|143162|FERM and PDZ domain containing 2##AK292523|MAPK8|5599|mitogen-activated protein kinase 8	0.093826	0.0	
chr19	38470198	38470333	reg1002831.p3	7.690	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-72353	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-72408	+	AK302913 AY026504 AK128826 NM_031951	-72991	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	244570	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	250051	-	TSC_hg19_v1_chr19_-_38720336 AK297581	250069	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.991743	0.0	denovo_WM_7:-58:0.331	denovo_WM_7:-59:0.331	denovo_WM_7:-60:0.331
chr3	98283721	98283857	reg1000906.p4	7.690	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-32980	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-41923	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-42024	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	28630	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	167456	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	167798	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.982634	0.0	denovo_WM_7:13:0.320	denovo_WM_7:14:0.320	denovo_WM_7:15:0.320
chr5	93222908	93223043	reg1003890.p2	7.689	+	CU688688 EU446850 BC029532 AB527965 AK098546 NM_153216	-145723	-	AK309742 TSC_hg19_v1_chr5_-_92957232	-265764	-	TSC_hg19_v1_chr5_+_92920609 BC004154 AB463944 HQ709180 HQ709181 HQ709182 HQ709183 X16155	-302307	+	TSC_hg19_v1_chr5_-_93447341 AL136630 AK312930 AK295879 AK296683 AK296986 AK295127 NM_001163417 NM_001163418 NM_032042	224345	-	TSC_hg19_v1_chr5_-_93954299 BX648338 BC035515 AK308195 NM_001145678 NM_173665	731282	-	BC070332 AK299080 AK297452 CR936768 AL050298 NM_032290 BC054885 BC107571	731398	+	EU446850|POU5F2|134187|POU domain class 5, transcription factor 2##BC029532|POU5F2|134187|POU domain class 5, transcription factor 2##AK098546|POU5F2|134187|POU domain class 5, transcription factor 2##NM_153216|POU5F2|134187|POU domain class 5, transcription factor 2##BC004154|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709180|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709181|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##HQ709182|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709183|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##X16155|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##AL136630|FAM172A|83989|family with sequence similarity 172, member A##AK312930|FAM172A|83989|family with sequence similarity 172, member A##AK295879|FAM172A|83989|family with sequence similarity 172, member A##AK296683|FAM172A|83989|family with sequence similarity 172, member A##AK296986|FAM172A|83989|family with sequence similarity 172, member A##AK295127|FAM172A|83989|family with sequence similarity 172, member A##NM_001163417|FAM172A|83989|family with sequence similarity 172, member A##NM_001163418|FAM172A|83989|family with sequence similarity 172, member A##NM_032042|FAM172A|83989|family with sequence similarity 172, member A##BX648338|KIAA0825|285600|KIAA0825##BC035515|KIAA0825|285600|KIAA0825##AK308195|KIAA0825|285600|KIAA0825##NM_001145678|KIAA0825|285600|KIAA0825##NM_173665|KIAA0825|285600|KIAA0825##BC070332|ANKRD32|84250|ankyrin repeat domain 32##AK299080|ANKRD32|84250|ankyrin repeat domain 32##AK297452|ANKRD32|84250|ankyrin repeat domain 32##CR936768|ANKRD32|84250|ankyrin repeat domain 32##AL050298|ANKRD32|84250|ankyrin repeat domain 32##NM_032290|ANKRD32|84250|ankyrin repeat domain 32##BC054885|ANKRD32|84250|ankyrin repeat domain 32##BC107571|ANKRD32|84250|ankyrin repeat domain 32	1.136719	0.0	denovo_WM_7:-4:0.414	denovo_WM_7:-5:0.370
chr16	85275023	85275177	reg1003740.p1	7.688	+	BC093665 BC111944 AK126284 NM_198491	-129046	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-213730	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-229971	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	369921	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	371853	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	447442	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.067396	0.0	
chr2	74412798	74412978	reg1000184.p1	7.688	+	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	-6981	-	AL122062 TSC_hg19_v1_chr2_-_74382411	-30507	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-37668	+	AK057260 TSC_hg19_v1_chr2_-_74425749	12827	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	12849	+	AF243499 AF293338 NM_021196	129262	-	AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AF243499|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##AF293338|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##NM_021196|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5	0.062717	0.0	
chr20	33306237	33306343	reg1004393.p1	7.687	+	AL122050 TSC_hg19_v1_chr20_+_33299806	-6497	+	AK027153 AK025412 TSC_hg19_v1_chr20_+_33299500	-6880	+	TSC_hg19_v1_chr20_+_33292147 AY422170 NM_021202 AJ297792 AK292443 BC035639	-14087	+	TSC_hg19_v1_chr20_-_33413434 BC069829 BC035676 NM_001242539 NM_014071 BC047886	107124	-	TSC_hg19_v1_chr20_-_33460644 AY138815 BC040030 AK124788 AK098355 BC101371 BC141843 BC101370 BC101372 AK299494 BC033745 NM_178026	154335	-	NM_001242393 TSC_hg19_v1_chr20_+_33462793 AK000162	156512	+	AL122050|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK027153|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK025412|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AY422170|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##NM_021202|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AJ297792|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK292443|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC035639|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC069829|NCOA6|23054|nuclear receptor coactivator 6##BC035676|NCOA6|23054|nuclear receptor coactivator 6##NM_001242539|NCOA6|23054|nuclear receptor coactivator 6##NM_014071|NCOA6|23054|nuclear receptor coactivator 6##BC047886|NCOA6|23054|nuclear receptor coactivator 6##AY138815|GGT7|2686|gamma-glutamyltransferase 7##BC040030|GGT7|2686|gamma-glutamyltransferase 7##AK124788|GGT7|2686|gamma-glutamyltransferase 7##BC101371|GGT7|2686|gamma-glutamyltransferase 7##BC141843|GGT7|2686|gamma-glutamyltransferase 7##BC101370|GGT7|2686|gamma-glutamyltransferase 7##BC101372|GGT7|2686|gamma-glutamyltransferase 7##AK299494|GGT7|2686|gamma-glutamyltransferase 7##BC033745|GGT7|2686|gamma-glutamyltransferase 7##NM_178026|GGT7|2686|gamma-glutamyltransferase 7##NM_001242393|ACSS2|55902|acyl-CoA synthetase short-chain family member 2##AK000162|ACSS2|55902|acyl-CoA synthetase short-chain family member 2	1.452054	0.0	denovo_WM_7:0:0.890	denovo_WM_7:32:0.454
chr10	75718295	75718433	reg1003661.p1	7.685	+	BC049374 NM_001001791	-35830	-	AB208961 TSC_hg19_v1_chr10_+_75673428	-44977	+	BC013575 K03226 M15476 D00244 TSC_hg19_v1_chr10_+_75670948 X02760	-47423	+	TSC_hg19_v1_chr10_+_75757873 AK304823 NM_003373 NM_014000 AK300280 AK296509 BC099919 BC039174 M33308 AB385172 DQ894680	39542	+	TSC_hg19_v1_chr10_-_75910513 BC067127	192148	-	TSC_hg19_v1_chr10_-_75910561 AK315597 AK026983 AK299352 BC026232 NM_012095 NM_207012	192324	-	BC049374|C10orf55|414236|chromosome 10 open reading frame 55##NM_001001791|C10orf55|414236|chromosome 10 open reading frame 55##AB208961|PLAU|5328|plasminogen activator, urokinase##BC013575|PLAU|5328|plasminogen activator, urokinase##K03226|PLAU|5328|plasminogen activator, urokinase##M15476|PLAU|5328|plasminogen activator, urokinase##D00244|PLAU|5328|plasminogen activator, urokinase##X02760|PLAU|5328|plasminogen activator, urokinase##AK304823|VCL|7414|vinculin##NM_003373|VCL|7414|vinculin##NM_014000|VCL|7414|vinculin##AK300280|VCL|7414|vinculin##AK296509|VCL|7414|vinculin##BC039174|VCL|7414|vinculin##M33308|VCL|7414|vinculin##DQ894680|VCL|7414|vinculin##BC067127|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK315597|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK026983|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK299352|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##BC026232|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_012095|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_207012|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit	1.301242	0.0	denovo_WM_7:8:0.203	denovo_WM_7:-13:0.310	denovo_WM_7:-14:0.310	denovo_WM_7:-15:0.310
chr12	116997545	116997725	reg1001970.p1	7.684	+	NM_001085481	-450	+	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	-26406	+	TSC_hg19_v1_chr12_-_116715263 AY338463	-282475	-	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	178103	-	TSC_hg19_v1_chr12_-_117175868 AK222983 AK298857	178234	-	TSC_hg19_v1_chr12_+_117176119 NM_001109903 NM_032814 BC011878 AK027533	178484	+	NM_001085481|MAP1LC3B2|643246|microtubule-associated protein 1 light chain 3 beta 2##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173##AY338463|MED13L|23389|mediator complex subunit 13-like##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49##AK222983|C12orf49|79794|chromosome 12 open reading frame 49##AK298857|C12orf49|79794|chromosome 12 open reading frame 49##NM_001109903|RNFT2|84900|ring finger protein, transmembrane 2##NM_032814|RNFT2|84900|ring finger protein, transmembrane 2##BC011878|RNFT2|84900|ring finger protein, transmembrane 2##AK027533|RNFT2|84900|ring finger protein, transmembrane 2	0.0	0.0	
chr16	10906629	10906783	reg1002992.p1	7.684	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-69002	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-117941	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-232216	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	5842	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	64406	+	BC071683 TSC_hg19_v1_chr16_-_11036171	129460	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.917103	0.0	denovo_WM_7:62:0.211	denovo_WM_7:75:0.504
chr1	161036418	161036538	reg1003279.p1	7.683	+	TSC_hg19_v1_chr1_-_161015769 NM_007122 NM_207005	-20711	-	AK314876 BC035505 TSC_hg19_v1_chr1_-_161015745	-20761	-	AF111713 TSC_hg19_v1_chr1_-_161008767 NM_001113205 NM_001113206 NM_001113207 AK299487	-27720	-	TSC_hg19_v1_chr1_-_161039466 AB463226 BC053688 BC025732	2989	-	TSC_hg19_v1_chr1_-_161039608 BC043387	3121	-	TSC_hg19_v1_chr1_-_161039656 BX537846	3179	-	NM_007122|USF1|7391|upstream transcription factor 1##NM_207005|USF1|7391|upstream transcription factor 1##AK314876|USF1|7391|upstream transcription factor 1##BC035505|USF1|7391|upstream transcription factor 1##NM_001113205|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113206|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113207|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##AK299487|F11R|50848|F11 receptor##BC053688|ARHGAP30|257106|Rho GTPase activating protein 30##BC025732|ARHGAP30|257106|Rho GTPase activating protein 30##BC043387|ARHGAP30|257106|Rho GTPase activating protein 30##BX537846|ARHGAP30|257106|Rho GTPase activating protein 30	1.949667	0.0	denovo_WM_7:-20:0.861	denovo_WM_7:-35:0.860
chr14	77095623	77095774	reg1004869.p1	7.683	+	NM_004452	-258009	+	AK000696 TSC_hg19_v1_chr14_+_76618289	-477392	+	TSC_hg19_v1_chr14_+_76618279 AB032978	-477421	+	TSC_hg19_v1_chr14_+_77227817 AK094330	132102	+	TSC_hg19_v1_chr14_+_77228562 NM_014909 AL832588 BC009031 AB028959	132757	+	BC051896 TSC_hg19_v1_chr14_+_77229090 AK291377 CU690882	133354	+	NM_004452|ESRRB|2103|estrogen-related receptor beta##AK000696|C14orf118|55668|chromosome 14 open reading frame 118##AB032978|C14orf118|55668|chromosome 14 open reading frame 118##NM_014909|VASH1|22846|vasohibin 1##AL832588|VASH1|22846|vasohibin 1##BC009031|VASH1|22846|vasohibin 1##AB028959|VASH1|22846|vasohibin 1##BC051896|VASH1|22846|vasohibin 1##AK291377|VASH1|22846|vasohibin 1	1.272256	0.0	denovo_WM_7:53:0.223	denovo_WM_7:-79:0.985
chr1	100250558	100250738	reg1004525.p1	7.682	+	AK131302 NM_001013660	-19300	-	NM_017734 AF262379 AL390971 AJ312214 BC012570 AK000278 AL390973	-139081	+	TSC_hg19_v1_chr1_+_99730067 AF357013 AK300361	-520563	+	TSC_hg19_v1_chr1_+_100315653 NM_000642 U84007	64995	+	TSC_hg19_v1_chr1_+_100315681 AB621804	65050	+	TSC_hg19_v1_chr1_+_100315814 BC078663 NM_000028 NM_000643 NM_000644 U84008 U84009 U84010	65277	+	AK131302|FRRS1|391059|ferric-chelate reductase 1##NM_001013660|FRRS1|391059|ferric-chelate reductase 1##NM_017734|PALMD|54873|palmdelphin##AF262379|PALMD|54873|palmdelphin##AL390971|PALMD|54873|palmdelphin##AJ312214|PALMD|54873|palmdelphin##BC012570|PALMD|54873|palmdelphin##AK000278|PALMD|54873|palmdelphin##AL390973|PALMD|54873|palmdelphin##AF357013|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AK300361|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_000642|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##U84007|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##BC078663|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##NM_000028|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##NM_000643|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##NM_000644|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##U84008|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##U84009|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##U84010|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	1.100647	0.0	denovo_WM_7:-32:0.258	denovo_WM_7:39:0.791
chr19	49957210	49957364	reg1004607.p2	7.681	+	AK297101 TSC_hg19_v1_chr19_+_49956529 BC014895 AK024182 AK301246	-757	+	NM_001145396 NM_153329 TSC_hg19_v1_chr19_+_49956479 AK298587 AK074136	-806	+	TSC_hg19_v1_chr19_-_49955072 AK294687 BC001108 AK000650 AK304476 NM_017916	-2218	-	NM_001204502 NM_001459 TSC_hg19_v1_chr19_+_49977483 U04806 BC006331 BC011914 BC028001 BC126293 BC136464 BC144129	20211	+	NM_001204503 U03858 AK301136 TSC_hg19_v1_chr19_+_49977846 HQ258599	20569	+	TSC_hg19_v1_chr19_+_49990861 AK130605	33569	+	AK297101|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##BC014895|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK024182|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK301246|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##NM_001145396|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##NM_153329|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK298587|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK074136|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK294687|PIH1D1|55011|PIH1 domain containing 1##BC001108|PIH1D1|55011|PIH1 domain containing 1##AK000650|PIH1D1|55011|PIH1 domain containing 1##AK304476|PIH1D1|55011|PIH1 domain containing 1##NM_017916|PIH1D1|55011|PIH1 domain containing 1##NM_001204502|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##NM_001459|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##U04806|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC006331|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC011914|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC028001|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC126293|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC136464|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC144129|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##NM_001204503|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##U03858|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##AK301136|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##HQ258599|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##AK130605|RPL13A|23521|ribosomal protein L13a	0.994768	0.0	denovo_WM_7:3:0.496
chr7	23036182	23036348	reg1004572.p1	7.680	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-173822	-	TSC_hg19_v1_chr7_+_22767104 X04403	-269147	+	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	-269442	+	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	17430	-	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	17485	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	109107	+	CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)	1.072957	0.0	
chr12	133336720	133336828	reg1004171.p1	7.679	+	AK025933 TSC_hg19_v1_chr12_-_133306584	-30216	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	-49338	+	TSC_hg19_v1_chr12_+_133264236 AF250136 NM_018663 BC073997 AY044439	-72570	+	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	1646	-	BC048203 TSC_hg19_v1_chr12_-_133372555	35783	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	68205	-	AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##AF250136|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##NM_018663|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##BC073997|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AY044439|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3	0.999414	0.0	
chr1	42119519	42119699	reg1004114.p1	7.678	+	BC034393 X55177 M65199 NM_001956	-169290	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-411773	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-411824	-	TSC_hg19_v1_chr1_-_42384357 BC040942	264733	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	264764	-	TSC_hg19_v1_chr1_-_42501606 BC046120	382020	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	1.973485	0.0	denovo_WM_7:23:0.765	denovo_WM_7:38:0.734
chr17	34131719	34131899	reg1004655.p1	7.678	+	AF219624 BC011774 AY358987 TSC_hg19_v1_chr17_-_34122596 BC002631 AF330002 NM_001032278 NM_024302 AK122604	-9181	-	NM_145272 BC021727 AB528807 AY557347	-43872	+	AF508784 AF508785 NM_139285	-51913	-	TSC_hg19_v1_chr17_+_34136487 BC048985 AK304520 AK307637 AK314194 BC030591 NM_003487 NM_139215 U51334 AK313223 BC046099 X98893	4700	+	BC039129 TSC_hg19_v1_chr17_+_34171892	39978	+	HQ258319 BC132681 BC144011 BC033734 AK301943 AK301884 AK057392 AK301774 NM_152781	64010	-	AF219624|MMP28|79148|matrix metallopeptidase 28##BC011774|MMP28|79148|matrix metallopeptidase 28##AY358987|MMP28|79148|matrix metallopeptidase 28##BC002631|MMP28|79148|matrix metallopeptidase 28##AF330002|MMP28|79148|matrix metallopeptidase 28##NM_001032278|MMP28|79148|matrix metallopeptidase 28##NM_024302|MMP28|79148|matrix metallopeptidase 28##AK122604|MMP28|79148|matrix metallopeptidase 28##NM_145272|C17orf50|146853|chromosome 17 open reading frame 50##BC021727|C17orf50|146853|chromosome 17 open reading frame 50##AY557347|C17orf50|146853|chromosome 17 open reading frame 50##AF508784|GAS2L2|246176|growth arrest-specific 2 like 2##AF508785|GAS2L2|246176|growth arrest-specific 2 like 2##NM_139285|GAS2L2|246176|growth arrest-specific 2 like 2##BC048985|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK304520|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK307637|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK314194|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##BC030591|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##NM_003487|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##NM_139215|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##U51334|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##AK313223|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##BC046099|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##X98893|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##BC039129|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##HQ258319|C17orf66|256957|chromosome 17 open reading frame 66##BC132681|C17orf66|256957|chromosome 17 open reading frame 66##BC144011|C17orf66|256957|chromosome 17 open reading frame 66##BC033734|C17orf66|256957|chromosome 17 open reading frame 66##AK301943|C17orf66|256957|chromosome 17 open reading frame 66##AK301884|C17orf66|256957|chromosome 17 open reading frame 66##AK057392|C17orf66|256957|chromosome 17 open reading frame 66##AK301774|C17orf66|256957|chromosome 17 open reading frame 66##NM_152781|C17orf66|256957|chromosome 17 open reading frame 66	0.0	0.30472	CTCF.p2:65:0.305
chr19	4352712	4352805	reg1004617.p1	7.678	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-9199	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-10008	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-13960	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	47635	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	47795	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	49958	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	1.017748	0.922392	CTCF.p2:11:0.922	denovo_WM_7:-39:0.210	denovo_WM_7:-65:0.294
chr10	91411982	91412162	reg1003851.p2	7.676	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-6748	-	TSC_hg19_v1_chr10_-_91404973 AK125428	-7129	-	AF355198 AY027662 AY027663 NM_138316 NM_148978	-8434	-	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	49303	+	TSC_hg19_v1_chr10_+_91498725 AK025628	86695	+	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	1205374	-	AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AK125428|PANK1|53354|pantothenate kinase 1##AF355198|PANK1|53354|pantothenate kinase 1##AY027662|PANK1|53354|pantothenate kinase 1##AY027663|PANK1|53354|pantothenate kinase 1##NM_138316|PANK1|53354|pantothenate kinase 1##NM_148978|PANK1|53354|pantothenate kinase 1##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AK025628|KIF20B|9585|kinesin family member 20B##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)	0.969996	0.0	denovo_WM_7:-19:0.213	denovo_WM_7:-20:0.550
chr3	172468120	172468293	reg1004217.p1	7.676	+	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	-39316	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	-227028	-	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	-301983	-	TSC_hg19_v1_chr3_+_172468557 BC070038 AK314581 AY376439 AK308391	318	+	BC112086 AK023267 NM_018098 AB528037 DQ847274 TSC_hg19_v1_chr3_+_172472359	4096	+	BC034496 AF345909 AF404758 AK093041 AX747878 NM_031955	390802	-	AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##BC070038|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK314581|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AY376439|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK308391|ECT2|1894|epithelial cell transforming sequence 2 oncogene##BC112086|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK023267|ECT2|1894|epithelial cell transforming sequence 2 oncogene##NM_018098|ECT2|1894|epithelial cell transforming sequence 2 oncogene##DQ847274|ECT2|1894|epithelial cell transforming sequence 2 oncogene##BC034496|SPATA16|83893|spermatogenesis associated 16##AF345909|SPATA16|83893|spermatogenesis associated 16##AF404758|SPATA16|83893|spermatogenesis associated 16##AK093041|SPATA16|83893|spermatogenesis associated 16##NM_031955|SPATA16|83893|spermatogenesis associated 16	0.997729	0.0	denovo_WM_7:-5:0.527	denovo_WM_7:-6:0.470
chr10	90570179	90570306	reg1003772.p1	7.675	+	EF426484 NM_001128215	-7756	+	EF426483 NM_001102469	-49080	+	AB528790 EF426482 NM_001080518	-85942	+	AX721211 NM_144590	41461	-	TSC_hg19_v1_chr10_+_90640003 AK056086 BC010846 NM_020799	69736	+	J05192 X13839 BC017554 TSC_hg19_v1_chr10_-_90712531 AK300353 BC093052 AK300664 AK313294 NM_001613	142302	-	EF426484|LIPM|340654|lipase, family member M##NM_001128215|LIPM|340654|lipase, family member M##EF426483|LIPN|643418|lipase, family member N##NM_001102469|LIPN|643418|lipase, family member N##EF426482|LIPK|643414|lipase, family member K##NM_001080518|LIPK|643414|lipase, family member K##NM_144590|ANKRD22|118932|ankyrin repeat domain 22##AK056086|STAMBPL1|57559|STAM binding protein-like 1##BC010846|STAMBPL1|57559|STAM binding protein-like 1##NM_020799|STAMBPL1|57559|STAM binding protein-like 1##J05192|ACTA2|59|actin, alpha 2, smooth muscle, aorta##X13839|ACTA2|59|actin, alpha 2, smooth muscle, aorta##BC017554|ACTA2|59|actin, alpha 2, smooth muscle, aorta##BC093052|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK300664|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK313294|ACTA2|59|actin, alpha 2, smooth muscle, aorta##NM_001613|ACTA2|59|actin, alpha 2, smooth muscle, aorta	0.998568	0.995386	CTCF.p2:-25:0.995	denovo_WM_7:33:0.494	denovo_WM_7:34:0.494
chrX	118754163	118754269	reg1004273.p2	7.675	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-14388	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-27234	-	BC042021 NM_181777	-39919	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	72869	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	72916	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	72963	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.994715	0.46208	CTCF.p2:-3:0.462	denovo_WM_7:74:0.309	denovo_WM_7:75:0.309	denovo_WM_7:76:0.309
chr1	21005368	21005500	reg1003459.p1	7.674	+	TSC_hg19_v1_chr1_-_20988023 NM_005216	-17405	-	TSC_hg19_v1_chr1_-_20987997 D29643 AK315633	-17432	-	TSC_hg19_v1_chr1_-_20987960 AK297009	-17467	-	AB463089 BC065927 AB290162 NM_001122819 NM_020816	38825	-	AK296431 TSC_hg19_v1_chr1_-_21058714	53273	-	AK124869 NM_001103160 NM_001103161	53698	-	NM_005216|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##D29643|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##AK315633|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##AK297009|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##BC065927|KIF17|57576|kinesin family member 17##AB290162|KIF17|57576|kinesin family member 17##NM_001122819|KIF17|57576|kinesin family member 17##NM_020816|KIF17|57576|kinesin family member 17##AK296431|SH2D5|400745|SH2 domain containing 5##AK124869|SH2D5|400745|SH2 domain containing 5##NM_001103160|SH2D5|400745|SH2 domain containing 5##NM_001103161|SH2D5|400745|SH2 domain containing 5	0.998193	0.0	
chr5	35922151	35922272	reg1004362.p2	7.674	+	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	-65178	+	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	-304202	+	NM_000949	-691389	-	NM_001042625 BC017586 NM_144647	16597	-	CU686633 BC068446 AK308046 AK290809 AK057066 AK303770 AK315851 AK296136 NM_152404	69227	-	BC035012 NM_001171873	78916	-	BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##NM_000949|PRLR|5618|prolactin receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like##BC068446|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK308046|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK290809|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK057066|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK303770|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK315851|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK296136|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##NM_152404|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##BC035012|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##NM_001171873|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1	0.997203	0.0	denovo_WM_7:-29:0.904
chr7	92262882	92263015	reg1004285.p1	7.674	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-43250	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-43306	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-104842	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	199819	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	200272	-	AK313491 TSC_hg19_v1_chr7_-_92465884	202950	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.996411	0.0	denovo_WM_7:-1:0.441	denovo_WM_7:-2:0.441
chr1	173182362	173182508	reg1004090.p2	7.673	+	CR542033 D90224 X79929 NM_003326	-6043	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	-7782	-	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	-162379	-	TSC_hg19_v1_chr1_-_173446300 AK127238	263873	-	TSC_hg19_v1_chr1_+_173446473 AK300680	264038	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	264092	+	CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##AK300680|PRDX6|9588|peroxiredoxin 6##BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6	0.970346	0.0	denovo_WM_7:5:0.322	denovo_WM_7:6:0.648
chr6	111577978	111578110	reg1004508.p2	7.673	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-169249	+	TSC_hg19_v1_chr6_+_111408673 AK126183 BC034031	-169368	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	-274770	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	2479	+	TSC_hg19_v1_chr6_+_111580568 BC036115	2528	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	226104	-	AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AK126183|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC034031|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##BC036115|KIAA1919|91749|KIAA1919##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.988102	0.7636	CTCF.p2:11:0.764
chr16	29827048	29827220	reg1003050.p1	7.672	+	TSC_hg19_v1_chr16_+_29823563 AK092265 AX747441 AL834185 BC053594	-3550	+	NM_145239 TSC_hg19_v1_chr16_+_29823510 AK292393 AK074572 AK225785 BC011405 AK098379	-3661	+	L01420 BC041629 AB209061 TSC_hg19_v1_chr16_+_29818849	-8359	+	TSC_hg19_v1_chr16_+_29827522 NM_024516	382	+	TSC_hg19_v1_chr16_+_29827809 BC003640 EF195235 CU678552	642	+	NM_005115 NM_017458 TSC_hg19_v1_chr16_+_29831736	4591	+	AK092265|PRRT2|112476|proline-rich transmembrane protein 2##AL834185|PRRT2|112476|proline-rich transmembrane protein 2##BC053594|PRRT2|112476|proline-rich transmembrane protein 2##NM_145239|PRRT2|112476|proline-rich transmembrane protein 2##AK292393|PRRT2|112476|proline-rich transmembrane protein 2##AK074572|PRRT2|112476|proline-rich transmembrane protein 2##AK225785|PRRT2|112476|proline-rich transmembrane protein 2##BC011405|PRRT2|112476|proline-rich transmembrane protein 2##AK098379|PRRT2|112476|proline-rich transmembrane protein 2##L01420|MAZ|4150|MYC-associated zinc finger protein (purine-binding transcription factor)##BC041629|MAZ|4150|MYC-associated zinc finger protein (purine-binding transcription factor)##AB209061|MAZ|4150|MYC-associated zinc finger protein (purine-binding transcription factor)##NM_024516|C16orf53|79447|chromosome 16 open reading frame 53##BC003640|C16orf53|79447|chromosome 16 open reading frame 53##EF195235|C16orf53|79447|chromosome 16 open reading frame 53##NM_005115|MVP|9961|major vault protein##NM_017458|MVP|9961|major vault protein	2.623368	0.0	denovo_WM_7:-22:0.424	denovo_WM_7:-23:0.424	denovo_WM_7:-66:0.335	denovo_WM_7:-81:0.340
chr4	122797024	122797156	reg1002344.p2	7.672	+	AB528453 CU689486 DQ890888 DQ896810 BC032691 AF521643 AF521644 AK001577 AK309803 AK308076 NM_018190 NM_176824	-5531	-	TSC_hg19_v1_chr4_-_122745039 BC021067 AK291931 NM_001237	-52049	-	CR407692 TSC_hg19_v1_chr4_-_122744913 BC104783 BC104787 X51688	-52239	-	AB255423 AB255424 BC093682 BC093684 BC143239 NM_003305	57139	-	AY865574 NM_001130698	75818	-	DQ335469 NM_015312	294667	+	DQ890888|BBS7|55212|Bardet-Biedl syndrome 7##DQ896810|BBS7|55212|Bardet-Biedl syndrome 7##BC032691|BBS7|55212|Bardet-Biedl syndrome 7##AF521643|BBS7|55212|Bardet-Biedl syndrome 7##AF521644|BBS7|55212|Bardet-Biedl syndrome 7##AK001577|BBS7|55212|Bardet-Biedl syndrome 7##AK309803|BBS7|55212|Bardet-Biedl syndrome 7##AK308076|BBS7|55212|Bardet-Biedl syndrome 7##NM_018190|BBS7|55212|Bardet-Biedl syndrome 7##NM_176824|BBS7|55212|Bardet-Biedl syndrome 7##AK291931|CCNA2|890|cyclin A2##NM_001237|CCNA2|890|cyclin A2##CR407692|CCNA2|890|cyclin A2##BC104783|CCNA2|890|cyclin A2##BC104787|CCNA2|890|cyclin A2##X51688|CCNA2|890|cyclin A2##AB255423|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##AB255424|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC093682|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC093684|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC143239|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_003305|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##AY865574|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_001130698|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##DQ335469|KIAA1109|84162|KIAA1109##NM_015312|KIAA1109|84162|KIAA1109	1.219828	0.0	
chr1	24234410	24234523	reg1004221.p2	7.671	+	CU675950 TSC_hg19_v1_chr1_-_24194781 M29877 AB074175 AK092914 AK095443 AK095455 AK225468 AK301302 AK310143 AK314649 AX747804 BC017338 AK295535 NM_000147	-39657	-	TSC_hg19_v1_chr1_-_24151934 NM_000191 NM_001166059	-82518	-	TSC_hg19_v1_chr1_-_24151929 BC021145 BT009792 CR456884 CU679747 DQ892083 DQ895276 L07033 BC010570 AK309129 AK300733 AK313869	-82579	-	BC069722 NM_001841 X74328 FJ357036	5338	-	NM_017761 TSC_hg19_v1_chr1_+_24286310	51839	+	TSC_hg19_v1_chr1_+_24286317 AF151042 AK300522 BC068475 AK311305 BC001959 BC085018 BC078177 AF374386	51880	+	M29877|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AB074175|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK092914|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095443|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095455|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK225468|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK301302|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK310143|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK314649|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC017338|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK295535|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000147|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000191|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_001166059|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC021145|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BT009792|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##CR456884|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ892083|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ895276|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##L07033|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC010570|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK309129|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK300733|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK313869|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC069722|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_001841|CNR2|1269|cannabinoid receptor 2 (macrophage)##X74328|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_017761|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF151042|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC068475|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AK311305|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC001959|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC085018|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC078177|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF374386|PNRC2|55629|proline-rich nuclear receptor coactivator 2	0.999636	0.0	
chr1	233733391	233733571	reg1003802.p2	7.669	+	AJ311797 AJ311798 NM_032435 BC136648 BC136649	-269898	+	NM_014801 TSC_hg19_v1_chr1_-_233431485 AK092353 AX747494	-301998	-	TSC_hg19_v1_chr1_+_233086381 AF416713	-647092	+	NM_002245 U33632 U90065 AK314016 BC018051 U76996 TSC_hg19_v1_chr1_+_233749898	16342	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	16438	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	307131	+	AJ311797|KIAA1804|84451|mixed lineage kinase 4##AJ311798|KIAA1804|84451|mixed lineage kinase 4##NM_032435|KIAA1804|84451|mixed lineage kinase 4##BC136648|KIAA1804|84451|mixed lineage kinase 4##BC136649|KIAA1804|84451|mixed lineage kinase 4##NM_014801|PCNXL2|80003|pecanex-like 2 (Drosophila)##AK092353|PCNXL2|80003|pecanex-like 2 (Drosophila)##AF416713|NTPCR|84284|nucleoside-triphosphatase, cancer-related##NM_002245|KCNK1|3775|potassium channel, subfamily K, member 1##U33632|KCNK1|3775|potassium channel, subfamily K, member 1##U90065|KCNK1|3775|potassium channel, subfamily K, member 1##AK314016|KCNK1|3775|potassium channel, subfamily K, member 1##BC018051|KCNK1|3775|potassium channel, subfamily K, member 1##U76996|KCNK1|3775|potassium channel, subfamily K, member 1##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3	0.03661	0.0	
chr20	33004238	33004374	reg1003966.p1	7.668	+	TSC_hg19_v1_chr20_+_32951078 NM_031483 AK297809 AK304090 AK315212 BC011571 AB056663	-53214	+	AK097610 NM_001161766	-104699	-	BT006697 CU679982 DQ890569 DQ891701 DQ893730 DQ895397 TSC_hg19_v1_chr20_-_32891162 M61832 M61831 BC010018 BC011606 AK300014 AK316180 AK290422 AK309204 NM_000687	-113162	-	TSC_hg19_v1_chr20_+_33104226 NM_014183 AF132750 BC002481 AF161511 AK294214 AF165516	99910	+	NM_181509	130385	+	TSC_hg19_v1_chr20_+_33146525 NM_032514 AF276658 BC015810 AL833855 AB528175 BT007452 DQ893641 DQ895536 AM392590	142280	+	NM_031483|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK297809|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK304090|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK315212|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##BC011571|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AB056663|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK097610|AHCY|191|adenosylhomocysteinase##NM_001161766|AHCY|191|adenosylhomocysteinase##BT006697|AHCY|191|adenosylhomocysteinase##DQ890569|AHCY|191|adenosylhomocysteinase##DQ891701|AHCY|191|adenosylhomocysteinase##DQ893730|AHCY|191|adenosylhomocysteinase##DQ895397|AHCY|191|adenosylhomocysteinase##M61832|AHCY|191|adenosylhomocysteinase##M61831|AHCY|191|adenosylhomocysteinase##BC010018|AHCY|191|adenosylhomocysteinase##BC011606|AHCY|191|adenosylhomocysteinase##AK300014|AHCY|191|adenosylhomocysteinase##AK316180|AHCY|191|adenosylhomocysteinase##AK290422|AHCY|191|adenosylhomocysteinase##AK309204|AHCY|191|adenosylhomocysteinase##NM_000687|AHCY|191|adenosylhomocysteinase##NM_014183|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF132750|DYNLRB1|83658|dynein, light chain, roadblock-type 1##BC002481|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF161511|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AK294214|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF165516|DYNLRB1|83658|dynein, light chain, roadblock-type 1##NM_181509|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##NM_032514|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AF276658|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BC015810|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AL833855|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BT007452|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ893641|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ895536|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AM392590|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha	0.284908	0.0	
chr2	27653251	27653412	reg1003499.p1	7.668	+	TSC_hg19_v1_chr2_+_27651497 AK225540 AF113249 BC001221 AK027538 AK223136 AK001946 AL136682	-1813	+	TSC_hg19_v1_chr2_+_27651460 AK301345 NM_013392	-1866	+	TSC_hg19_v1_chr2_-_27632542 AK312455	-20789	-	BC101689 NM_001168364 NM_173853 BC101687 BC143574 AY157576 AY358993	11941	+	AB384576 BC137126 BC144491 AK055826 NM_015662 AK310417 AK304658 BC142675 BC142729 AK299576	59256	-	TSC_hg19_v1_chr2_-_27718068 BC024175 AK026015	64745	-	AK225540|NRBP1|29959|nuclear receptor binding protein 1##AF113249|NRBP1|29959|nuclear receptor binding protein 1##BC001221|NRBP1|29959|nuclear receptor binding protein 1##AK027538|NRBP1|29959|nuclear receptor binding protein 1##AK223136|NRBP1|29959|nuclear receptor binding protein 1##AK001946|NRBP1|29959|nuclear receptor binding protein 1##AL136682|NRBP1|29959|nuclear receptor binding protein 1##AK301345|NRBP1|29959|nuclear receptor binding protein 1##NM_013392|NRBP1|29959|nuclear receptor binding protein 1##AK312455|PPM1G|5496|protein phosphatase, Mg2+/Mn2+ dependent, 1G##BC101689|KRTCAP3|200634|keratinocyte associated protein 3##NM_001168364|KRTCAP3|200634|keratinocyte associated protein 3##NM_173853|KRTCAP3|200634|keratinocyte associated protein 3##BC101687|KRTCAP3|200634|keratinocyte associated protein 3##BC143574|KRTCAP3|200634|keratinocyte associated protein 3##AY157576|KRTCAP3|200634|keratinocyte associated protein 3##AY358993|KRTCAP3|200634|keratinocyte associated protein 3##BC137126|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##BC144491|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##AK055826|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##NM_015662|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##AK310417|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##AK304658|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##BC142675|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##BC142729|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##AK299576|IFT172|26160|intraflagellar transport 172 homolog (Chlamydomonas)##BC024175|FNDC4|64838|fibronectin type III domain containing 4##AK026015|FNDC4|64838|fibronectin type III domain containing 4	2.312444	0.0	denovo_WM_7:0:0.714	denovo_WM_7:-14:0.385	denovo_WM_7:15:0.801
chr6	88506202	88506382	reg1003294.p1	7.668	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-94304	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-94344	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-94383	-	BC029488 NM_030960 AF203447	251238	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	348744	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	369474	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.998408	0.0	denovo_WM_7:-42:0.965
chr7	137290974	137291132	reg1003854.p1	7.668	+	BC005916 TSC_hg19_v1_chr7_-_137028543 NM_002825 M57399	-262498	-	X52946 TSC_hg19_v1_chr7_-_137028443 AK313424	-262612	-	TSC_hg19_v1_chr7_-_137028371 AK290488	-262680	-	TSC_hg19_v1_chr7_-_137531587 NM_004717	240543	-	TSC_hg19_v1_chr7_+_137531690 BC047556	240679	+	TSC_hg19_v1_chr7_-_137620668 BC015585	329609	-	BC005916|PTN|5764|pleiotrophin##NM_002825|PTN|5764|pleiotrophin##M57399|PTN|5764|pleiotrophin##X52946|PTN|5764|pleiotrophin##AK313424|PTN|5764|pleiotrophin##AK290488|PTN|5764|pleiotrophin##NM_004717|DGKI|9162|diacylglycerol kinase, iota##BC015585|CREB3L2|64764|cAMP responsive element binding protein 3-like 2	0.999377	0.991605	denovo_WM_7:12:0.324	denovo_WM_7:15:0.221	CTCF.p2:-50:0.992
chr1	45178648	45178805	reg1005526.p1	7.667	+	BC026115 NM_001145636	-38333	+	AK296548 TSC_hg19_v1_chr1_-_45140143 BC007521	-38578	-	CR457348 AK026006 AK225405 TSC_hg19_v1_chr1_-_45140099 BC064520 NM_024587 AL832539	-38639	-	TSC_hg19_v1_chr1_+_45205518 AB264115 NM_006845	26772	+	AK124208 AK300756 AK312606 TSC_hg19_v1_chr1_+_45205533 BC008764 U63743 BC014924	26816	+	TSC_hg19_v1_chr1_+_45205568 AK290688 AB590244 BT006759 CR450302 CU677119 CU679091 DQ893800 EU176178	26855	+	BC026115|C1orf228|339541|chromosome 1 open reading frame 228##NM_001145636|C1orf228|339541|chromosome 1 open reading frame 228##AK296548|TMEM53|79639|transmembrane protein 53##BC007521|TMEM53|79639|transmembrane protein 53##CR457348|TMEM53|79639|transmembrane protein 53##AK026006|TMEM53|79639|transmembrane protein 53##AK225405|TMEM53|79639|transmembrane protein 53##BC064520|TMEM53|79639|transmembrane protein 53##NM_024587|TMEM53|79639|transmembrane protein 53##AL832539|TMEM53|79639|transmembrane protein 53##AB264115|KIF2C|11004|kinesin family member 2C##NM_006845|KIF2C|11004|kinesin family member 2C##AK300756|KIF2C|11004|kinesin family member 2C##AK312606|KIF2C|11004|kinesin family member 2C##BC008764|KIF2C|11004|kinesin family member 2C##U63743|KIF2C|11004|kinesin family member 2C##BC014924|KIF2C|11004|kinesin family member 2C##AK290688|KIF2C|11004|kinesin family member 2C##BT006759|KIF2C|11004|kinesin family member 2C##CR450302|KIF2C|11004|kinesin family member 2C##DQ893800|KIF2C|11004|kinesin family member 2C##EU176178|KIF2C|11004|kinesin family member 2C	1.998185	0.0	denovo_WM_7:-25:0.964
chr1	168378179	168378298	reg1004309.p1	7.666	+	AJ010277 NM_005149 BC093664 BC093666 EU446671	-127936	+	TSC_hg19_v1_chr1_+_168195262 BC068098 CU686619	-182945	+	TSC_hg19_v1_chr1_+_168195254 AK290325 NM_199344	-182987	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	134979	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	167554	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	320191	-	AJ010277|TBX19|9095|T-box 19##NM_005149|TBX19|9095|T-box 19##BC093664|TBX19|9095|T-box 19##BC093666|TBX19|9095|T-box 19##EU446671|TBX19|9095|T-box 19##BC068098|SFT2D2|375035|SFT2 domain containing 2##AK290325|SFT2D2|375035|SFT2 domain containing 2##NM_199344|SFT2D2|375035|SFT2 domain containing 2##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin	0.0	0.0	
chr4	6827287	6827401	reg1004541.p1	7.665	+	TSC_hg19_v1_chr4_+_6784518 AK124715 EF553521	-42816	+	TSC_hg19_v1_chr4_+_6784467 BC150286 D86985	-42870	+	TSC_hg19_v1_chr4_+_6784458 NM_001100590 NM_014743	-42889	+	TSC_hg19_v1_chr4_+_6911192 NM_001113361	83808	+	TSC_hg19_v1_chr4_-_6911379 BC032036	84061	-	TSC_hg19_v1_chr4_+_6911497 NM_020773	84132	+	AK124715|KIAA0232|9778|KIAA0232##EF553521|KIAA0232|9778|KIAA0232##BC150286|KIAA0232|9778|KIAA0232##D86985|KIAA0232|9778|KIAA0232##NM_001100590|KIAA0232|9778|KIAA0232##NM_014743|KIAA0232|9778|KIAA0232##NM_001113361|TBC1D14|57533|TBC1 domain family, member 14##NM_020773|TBC1D14|57533|TBC1 domain family, member 14	0.0	0.0	
chr6_dbb_hap3	2029356	2029495	reg1004823.p2	7.663	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.981751	0.0	denovo_WM_7:14:0.337	denovo_WM_7:15:0.355	denovo_WM_7:16:0.266
chrX	56807200	56807319	reg1003299.p2	7.663	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-51568	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-217208	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-548349	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	214712	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	340669	-	BC071694 NM_019003	356798	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	1.178616	0.0	
chr2	231091109	231091249	reg1003967.p1	7.662	+	AK301317 AK301267 NM_001005176 NM_007237 U36499 U36500 U63420 BC105744 BC105960 BC105743 BC054890 BC070160 BC038091	-716	+	AK301097 NM_001185015	-736	-	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	-6464	-	TSC_hg19_v1_chr2_+_231191907 NM_138402	100747	+	NM_001080391 NM_001206701 NM_001206702 NM_001206703 NM_003113 TSC_hg19_v1_chr2_+_231280903	189708	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	189740	+	AK301317|SP140|11262|SP140 nuclear body protein##AK301267|SP140|11262|SP140 nuclear body protein##NM_001005176|SP140|11262|SP140 nuclear body protein##NM_007237|SP140|11262|SP140 nuclear body protein##U36499|SP140|11262|SP140 nuclear body protein##U36500|SP140|11262|SP140 nuclear body protein##U63420|SP140|11262|SP140 nuclear body protein##BC105744|SP140|11262|SP140 nuclear body protein##BC105960|SP140|11262|SP140 nuclear body protein##BC105743|SP140|11262|SP140 nuclear body protein##BC054890|SP140|11262|SP140 nuclear body protein##BC070160|SP140|11262|SP140 nuclear body protein##BC038091|SP140|11262|SP140 nuclear body protein##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein##AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##NM_138402|SP140L|93349|SP140 nuclear body protein-like##NM_001080391|SP100|6672|SP100 nuclear antigen##NM_001206701|SP100|6672|SP100 nuclear antigen##NM_001206702|SP100|6672|SP100 nuclear antigen##NM_001206703|SP100|6672|SP100 nuclear antigen##NM_003113|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen	0.055768	0.0	
chr8	134029444	134029624	reg1004658.p2	7.662	+	AK303666 NM_003235 X05615 BC140933 U93033 X02154	-150311	+	TSC_hg19_v1_chr8_+_133787633 AK290506 BC002822 BC015211	-241892	+	TSC_hg19_v1_chr8_+_133787606 NM_016018 NM_032205 NM_198513	-241951	+	AB464247 BT019994 CR536537 EU831422 EU831515 D89077 BC007042 NM_006748	42969	-	TSC_hg19_v1_chr8_-_134087203 AK311010 AK310092	57661	-	AJ238591 TSC_hg19_v1_chr8_-_134087273 AK310108 AK310115	57738	-	AK303666|TG|7038|thyroglobulin##NM_003235|TG|7038|thyroglobulin##X05615|TG|7038|thyroglobulin##BC140933|TG|7038|thyroglobulin##U93033|TG|7038|thyroglobulin##X02154|TG|7038|thyroglobulin##AK290506|PHF20L1|51105|PHD finger protein 20-like 1##BC002822|PHF20L1|51105|PHD finger protein 20-like 1##BC015211|PHF20L1|51105|PHD finger protein 20-like 1##NM_016018|PHF20L1|51105|PHD finger protein 20-like 1##NM_032205|PHF20L1|51105|PHD finger protein 20-like 1##NM_198513|PHF20L1|51105|PHD finger protein 20-like 1##BT019994|SLA|6503|Src-like-adaptor##CR536537|SLA|6503|Src-like-adaptor##EU831422|SLA|6503|Src-like-adaptor##EU831515|SLA|6503|Src-like-adaptor##D89077|SLA|6503|Src-like-adaptor##BC007042|SLA|6503|Src-like-adaptor##NM_006748|SLA|6503|Src-like-adaptor##AK311010|SLA|6503|Src-like-adaptor##AK310092|SLA|6503|Src-like-adaptor##AJ238591|SLA|6503|Src-like-adaptor##AK310108|SLA|6503|Src-like-adaptor##AK310115|SLA|6503|Src-like-adaptor	0.998859	0.0	denovo_WM_7:-20:0.450	denovo_WM_7:-21:0.450
chr11	60931785	60931925	reg1005015.p1	7.660	+	BC141827 BC142702 AK097326 TSC_hg19_v1_chr11_-_60928910 NM_017966 AL834261 AK302384	-2925	-	NM_014207 AY541703 TSC_hg19_v1_chr11_+_60869960 AK292698 X04391 BC027901 DQ892077 DQ895270	-61876	+	NM_006725 TSC_hg19_v1_chr11_+_60739236 AK128419 AK312749 BC078669 BC033755 X60992 AK292704 DQ786329 DQ786330 U66142 U66145 U66146	-192630	+	NM_001079807 AK301286 AK301293 AK301305 AK312941 AK125628 AK225669 AK225679 AK291864 BC150659 BC171808 BC171814 BC171815 BC171910 BC171920 AB528778	39153	+	AK301305 AK312941 NM_001079808 AK125628 AK225669 AK225679 AK291864 BC150659 BC171808 BC171814 BC171815 BC171910 BC171920 AB528778	57990	+	NM_014224 BC146999 BC171889 BC171897 BC029055	76800	+	BC141827|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##BC142702|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK097326|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_017966|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AL834261|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK302384|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_014207|CD5|921|CD5 molecule##AY541703|CD5|921|CD5 molecule##AK292698|CD5|921|CD5 molecule##X04391|CD5|921|CD5 molecule##BC027901|CD5|921|CD5 molecule##DQ892077|CD5|921|CD5 molecule##DQ895270|CD5|921|CD5 molecule##NM_006725|CD6|923|CD6 molecule##AK128419|CD6|923|CD6 molecule##AK312749|CD6|923|CD6 molecule##BC078669|CD6|923|CD6 molecule##BC033755|CD6|923|CD6 molecule##X60992|CD6|923|CD6 molecule##AK292704|CD6|923|CD6 molecule##DQ786329|CD6|923|CD6 molecule##DQ786330|CD6|923|CD6 molecule##U66142|CD6|923|CD6 molecule##U66145|CD6|923|CD6 molecule##U66146|CD6|923|CD6 molecule##NM_001079807|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301286|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301293|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301305|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK312941|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK125628|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225669|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225679|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK291864|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC150659|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171808|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171814|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171815|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##BC171910|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171920|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK301305|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK312941|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##NM_001079808|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK125628|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225669|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225679|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK291864|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC150659|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171808|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171814|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171815|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##BC171910|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171920|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##NM_014224|PGA5|5222|pepsinogen 5, group I (pepsinogen A)##BC146999|PGA5|5222|pepsinogen 5, group I (pepsinogen A)##BC171889|PGA5|5222|pepsinogen 5, group I (pepsinogen A)##BC171897|PGA5|5222|pepsinogen 5, group I (pepsinogen A)##BC029055|PGA5|5222|pepsinogen 5, group I (pepsinogen A)	0.990822	0.0	denovo_WM_7:-24:0.228	denovo_WM_7:-25:0.228	denovo_WM_7:-26:0.228	denovo_WM_7:-27:0.228
chr13	38895904	38896061	reg1004266.p2	7.658	+	BC104725 BC105306 BC105641 BC105917 AK312524 AF175406 AF063822 AF063823 AF063824 AF063825 NM_001135955 NM_001135956 NM_001135957 NM_001135958 NM_003306 NM_016179	-452084	-	EU262883 EU262884 EU262885 EU262886 AY140646 AY918092 BC106709 BC106710 D13666 GU354210 D13665 TSC_hg19_v1_chr13_-_38172906 NM_001135934 NM_001135935 NM_001135936 NM_006475	-723061	-	BC028723 NM_145203	-1216182	-	NM_016617 TSC_hg19_v1_chr13_+_38923946	27969	+	TSC_hg19_v1_chr13_+_38923995 AK095490 AK307111 BC005193 Z70222 AF208844 AK309914 AB154404 CR457189	28067	+	NM_207361	365190	+	BC104725|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105306|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105641|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105917|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AK312524|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF175406|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063822|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063823|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063824|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063825|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135955|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135956|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135957|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135958|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_003306|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_016179|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##EU262883|POSTN|10631|periostin, osteoblast specific factor##EU262884|POSTN|10631|periostin, osteoblast specific factor##EU262885|POSTN|10631|periostin, osteoblast specific factor##EU262886|POSTN|10631|periostin, osteoblast specific factor##AY140646|POSTN|10631|periostin, osteoblast specific factor##AY918092|POSTN|10631|periostin, osteoblast specific factor##BC106709|POSTN|10631|periostin, osteoblast specific factor##BC106710|POSTN|10631|periostin, osteoblast specific factor##D13666|POSTN|10631|periostin, osteoblast specific factor##GU354210|POSTN|10631|periostin, osteoblast specific factor##D13665|POSTN|10631|periostin, osteoblast specific factor##NM_001135934|POSTN|10631|periostin, osteoblast specific factor##NM_001135935|POSTN|10631|periostin, osteoblast specific factor##NM_001135936|POSTN|10631|periostin, osteoblast specific factor##NM_006475|POSTN|10631|periostin, osteoblast specific factor##BC028723|CSNK1A1L|122011|casein kinase 1, alpha 1-like##NM_145203|CSNK1A1L|122011|casein kinase 1, alpha 1-like##NM_016617|UFM1|51569|ubiquitin-fold modifier 1##AK095490|UFM1|51569|ubiquitin-fold modifier 1##AK307111|UFM1|51569|ubiquitin-fold modifier 1##BC005193|UFM1|51569|ubiquitin-fold modifier 1##Z70222|UFM1|51569|ubiquitin-fold modifier 1##AF208844|UFM1|51569|ubiquitin-fold modifier 1##AK309914|UFM1|51569|ubiquitin-fold modifier 1##AB154404|UFM1|51569|ubiquitin-fold modifier 1##CR457189|UFM1|51569|ubiquitin-fold modifier 1##NM_207361|FREM2|341640|FRAS1 related extracellular matrix protein 2	0.997205	0.0	denovo_WM_7:20:0.985
chr16	10963980	10964124	reg1003761.p1	7.658	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-51504	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-126348	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-175287	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	7060	+	BC071683 TSC_hg19_v1_chr16_-_11036171	72114	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	72183	-	BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)	1.770482	0.0	denovo_WM_7:-2:0.476	denovo_WM_7:-3:0.296	denovo_WM_7:-17:0.487	denovo_WM_7:-18:0.278
chr10	27239896	27240054	reg1004866.p2	7.657	+	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	-89970	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	-90036	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	-90135	-	BC130453 TSC_hg19_v1_chr10_-_27389422 AB028997 AK001137 NM_014915	149409	-	AB384745 CU692788 BC019602 TSC_hg19_v1_chr10_-_27443272 AY358484 AK314372 AK291292	203232	-	TSC_hg19_v1_chr10_-_27443304 BC007795 BC023507 BC024032	203316	-	NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##BC130453|ANKRD26|22852|ankyrin repeat domain 26##AB028997|ANKRD26|22852|ankyrin repeat domain 26##AK001137|ANKRD26|22852|ankyrin repeat domain 26##NM_014915|ANKRD26|22852|ankyrin repeat domain 26##BC019602|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AY358484|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK314372|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK291292|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC007795|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC023507|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC024032|YME1L1|10730|YME1-like 1 (S. cerevisiae)	2.00382	0.0	denovo_WM_7:-15:0.248	denovo_WM_7:-16:0.243	denovo_WM_7:-17:0.216	denovo_WM_7:-18:0.216	denovo_WM_7:-34:0.216	denovo_WM_7:-46:0.273
chr8	90773883	90774047	reg1004002.p1	7.657	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	-3681	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	-3935	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1434219	-	AF061326 NM_004337	140130	+	BC031054 NM_001126111 TSC_hg19_v1_chr8_+_90914816	140829	+	TSC_hg19_v1_chr8_-_90996804 AB528582 BC143065 BC143066 BC108650 BC016762 BC005293 AF058696 AF051334 AK223256 BC146797 BC136802 BC136803 BC144413	222867	-	AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC031054|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001126111|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC143065|NBN|4683|nibrin##BC143066|NBN|4683|nibrin##BC108650|NBN|4683|nibrin##BC016762|NBN|4683|nibrin##BC005293|NBN|4683|nibrin##AF058696|NBN|4683|nibrin##AF051334|NBN|4683|nibrin##AK223256|NBN|4683|nibrin##BC146797|NBN|4683|nibrin##BC136802|NBN|4683|nibrin##BC136803|NBN|4683|nibrin##BC144413|NBN|4683|nibrin	1.018788	0.0	denovo_WM_7:-17:0.964
chrX	1455346	1455515	reg1003192.p1	7.657	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-53847	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-67716	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-123846	-	BC035407 NM_002183	78	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	55539	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	116371	-	NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like	0.987002	0.0	denovo_WM_7:19:0.892
chr20	17837060	17837195	reg1003906.p1	7.656	+	BC054871 NM_001014977 NM_178477 BC062735	-156529	+	NM_001159495	-162808	+	TSC_hg19_v1_chr20_-_17662888 AB037819 BC009700 NM_001042576 NM_004587	-174244	-	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	112087	-	TSC_hg19_v1_chr20_-_17949438 BC002724 BC062638 BC064555 BC073171 AK123903 AK308017 AK296947 BC000100 AF121855 NM_152227	112313	-	TSC_hg19_v1_chr20_+_17949742 AF306686 AK315532 AF306684 AF306685 AK027503 BC016869 NM_052865	112535	+	BC054871|BANF2|140836|barrier to autointegration factor 2##NM_001014977|BANF2|140836|barrier to autointegration factor 2##NM_178477|BANF2|140836|barrier to autointegration factor 2##BC062735|BANF2|140836|barrier to autointegration factor 2##NM_001159495|BANF2|140836|barrier to autointegration factor 2##AB037819|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC009700|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001042576|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_004587|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5##BC002724|SNX5|27131|sorting nexin 5##BC062638|SNX5|27131|sorting nexin 5##AK123903|SNX5|27131|sorting nexin 5##AK308017|SNX5|27131|sorting nexin 5##AK296947|SNX5|27131|sorting nexin 5##BC000100|SNX5|27131|sorting nexin 5##AF121855|SNX5|27131|sorting nexin 5##NM_152227|SNX5|27131|sorting nexin 5##AF306686|C20orf72|92667|chromosome 20 open reading frame 72##AK315532|C20orf72|92667|chromosome 20 open reading frame 72##AF306684|C20orf72|92667|chromosome 20 open reading frame 72##AF306685|C20orf72|92667|chromosome 20 open reading frame 72##AK027503|C20orf72|92667|chromosome 20 open reading frame 72##BC016869|C20orf72|92667|chromosome 20 open reading frame 72##NM_052865|C20orf72|92667|chromosome 20 open reading frame 72	0.254559	0.0	denovo_WM_7:64:0.221
chr10	6534194	6534374	reg1004005.p2	7.653	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-289408	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-347372	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-347400	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	87977	-	TSC_hg19_v1_chr10_+_6622460 AY007155	88196	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	916966	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.994591	0.0	denovo_WM_7:-72:0.239	denovo_WM_7:-73:0.239	denovo_WM_7:-74:0.239	denovo_WM_7:-75:0.239
chr11	17928673	17928845	reg1004461.p2	7.653	+	NM_001112741 NM_004976 AB529092	-171240	+	NM_002478 AK314968 TSC_hg19_v1_chr11_+_17741117 BC000353 X56677 BC064493 AB463907 BT007157	-187540	+	CU677569 TSC_hg19_v1_chr11_-_17565964 AK290788 AK300936 AB018687 BC016057 AF039699 AF039700 AK225614 NM_005709 NM_153676	-362842	-	TSC_hg19_v1_chr11_-_18034463 AK294022	105691	-	TSC_hg19_v1_chr11_-_18034595 AJ243950 AJ243951 BC000707 NM_012139	105804	-	BC065375 AK292286 TSC_hg19_v1_chr11_-_18034745	105957	-	NM_001112741|KCNC1|3746|potassium voltage-gated channel, Shaw-related subfamily, member 1##NM_004976|KCNC1|3746|potassium voltage-gated channel, Shaw-related subfamily, member 1##NM_002478|MYOD1|4654|myogenic differentiation 1##AK314968|MYOD1|4654|myogenic differentiation 1##X56677|MYOD1|4654|myogenic differentiation 1##BC064493|MYOD1|4654|myogenic differentiation 1##BT007157|MYOD1|4654|myogenic differentiation 1##AK290788|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK300936|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AB018687|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##BC016057|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AF039699|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AF039700|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK225614|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_005709|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_153676|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK294022|SERGEF|26297|secretion regulating guanine nucleotide exchange factor##AJ243950|SERGEF|26297|secretion regulating guanine nucleotide exchange factor##AJ243951|SERGEF|26297|secretion regulating guanine nucleotide exchange factor##BC000707|SERGEF|26297|secretion regulating guanine nucleotide exchange factor##NM_012139|SERGEF|26297|secretion regulating guanine nucleotide exchange factor##BC065375|SERGEF|26297|secretion regulating guanine nucleotide exchange factor##AK292286|SERGEF|26297|secretion regulating guanine nucleotide exchange factor	0.99585	0.0	
chr1	46805653	46805805	reg1004608.p2	7.651	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-36342	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-36681	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-36712	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	714	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	54247	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	166943	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.999674	0.0	
chr3	57029608	57029724	reg1003812.p2	7.651	+	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	-193755	-	AK293864 AB209661 NM_001128616	-219997	-	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-312459	-	AY221117 NM_181727 BC126274 BC136498	64837	+	AF433662 AK302493 NM_001128615	83647	-	AF458067 TSC_hg19_v1_chr3_-_57199347	169667	-	AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF458067|IL17RD|54756|interleukin 17 receptor D	0.0	0.714229	CTCF.p2:-41:0.714
chr5	158527213	158527393	reg1000095.p4	7.651	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	-561	-	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-846	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1241213	-	AK304228 NM_001199382	107345	-	AK056513 NM_144726	107530	-	AK311433 AK304435 NM_001199381	107806	-	BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145##AK311433|RNF145|153830|ring finger protein 145##AK304435|RNF145|153830|ring finger protein 145##NM_001199381|RNF145|153830|ring finger protein 145	0.0	0.0	
chr1	206939866	206940014	reg1004367.p1	7.650	+	TSC_hg19_v1_chr1_+_206858308 BC036060 NM_004759 NM_032960 BC052584 AB590627 X75346	-81469	+	AB529015 BC037269 AF327561 TSC_hg19_v1_chr1_+_206809124 AF186774	-130830	+	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	-131096	+	AF043333 AY029171 CR541993 CR542028 AB587432 M57627 BC104252 BC104253 BC022315 NM_000572 EU751618 EU751619	5939	-	AY040367 NM_153758 AB463800	32286	+	AF453946 NM_013371	62281	+	BC036060|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_004759|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_032960|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC052584|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##X75346|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC037269|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF327561|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186774|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF043333|IL10|3586|interleukin 10##AY029171|IL10|3586|interleukin 10##CR541993|IL10|3586|interleukin 10##CR542028|IL10|3586|interleukin 10##M57627|IL10|3586|interleukin 10##BC104252|IL10|3586|interleukin 10##BC104253|IL10|3586|interleukin 10##BC022315|IL10|3586|interleukin 10##NM_000572|IL10|3586|interleukin 10##AY040367|IL19|29949|interleukin 19##NM_153758|IL19|29949|interleukin 19##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19	0.0	0.0	
chr3	52312992	52313102	reg1004164.p2	7.650	+	TSC_hg19_v1_chr3_-_52312656 NM_025222	-391	-	TSC_hg19_v1_chr3_-_52312406 AB590669 AY358264 BX648628 AK291380	-657	-	BC018941 AK074290 TSC_hg19_v1_chr3_-_52294468	-18600	-	AF448855 AY172690 BC036862 NM_001144951 NM_145262 TSC_hg19_v1_chr3_+_52321852 AK074215	8796	+	TSC_hg19_v1_chr3_+_52321862 BC042151 BC021896	8827	+	AB037831 AB290163 NM_015512	37287	+	NM_025222|WDR82|80335|WD repeat domain 82##AY358264|WDR82|80335|WD repeat domain 82##BX648628|WDR82|80335|WD repeat domain 82##AK291380|WDR82|80335|WD repeat domain 82##BC018941|WDR82|80335|WD repeat domain 82##AK074290|WDR82|80335|WD repeat domain 82##AF448855|GLYCTK|132158|glycerate kinase##AY172690|GLYCTK|132158|glycerate kinase##BC036862|GLYCTK|132158|glycerate kinase##NM_001144951|GLYCTK|132158|glycerate kinase##NM_145262|GLYCTK|132158|glycerate kinase##AK074215|GLYCTK|132158|glycerate kinase##BC042151|GLYCTK|132158|glycerate kinase##BC021896|GLYCTK|132158|glycerate kinase##AB037831|DNAH1|25981|dynein, axonemal, heavy chain 1##AB290163|DNAH1|25981|dynein, axonemal, heavy chain 1##NM_015512|DNAH1|25981|dynein, axonemal, heavy chain 1	0.998235	0.0	denovo_WM_7:28:0.457	denovo_WM_7:29:0.457
chr4	154361728	154361825	reg1002770.p1	7.649	+	AK312172 BC032142 TSC_hg19_v1_chr4_+_154265868 AY028916	-95901	+	TSC_hg19_v1_chr4_+_154265799 NM_001253861 NM_032117	-95989	+	TSC_hg19_v1_chr4_+_154178530 BC025417	-183237	+	TSC_hg19_v1_chr4_+_154387511 NM_001131007 NM_015196 AK092270 AX747443 AK308448	25716	+	TSC_hg19_v1_chr4_+_154605403 AF424049 AF424050 AF424051 AF424052 AF424053	243622	+	TSC_hg19_v1_chr4_+_154605431 NM_003264	243654	+	AK312172|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC032142|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##AY028916|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_001253861|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_032117|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC025417|TRIM2|23321|tripartite motif containing 2##NM_001131007|KIAA0922|23240|KIAA0922##NM_015196|KIAA0922|23240|KIAA0922##AK092270|KIAA0922|23240|KIAA0922##AK308448|KIAA0922|23240|KIAA0922##AF424049|TLR2|7097|toll-like receptor 2##NM_003264|TLR2|7097|toll-like receptor 2	0.97039	0.0	denovo_WM_7:-29:0.695
chr2	232043638	232043761	reg1004476.p2	7.648	+	AK313741 BC063123 NM_000867	-53910	-	TSC_hg19_v1_chr2_+_231921625 BC020223 BC007535 BC073833 BC039845 BC047897 D44466 AB590660	-122019	+	BC014013 TSC_hg19_v1_chr2_+_231921608 BC005036 BC032445 BC112344 BC114434 AK312528 BC001053 AK307513	-122083	+	TSC_hg19_v1_chr2_+_232063340 NM_025139 BX537956 AK309395	19656	+	AY219922 TSC_hg19_v1_chr2_+_232063378	19679	+	TSC_hg19_v1_chr2_+_232063410 AY929062	19695	+	AK313741|HTR2B|3357|5-hydroxytryptamine (serotonin) receptor 2B##BC063123|HTR2B|3357|5-hydroxytryptamine (serotonin) receptor 2B##NM_000867|HTR2B|3357|5-hydroxytryptamine (serotonin) receptor 2B##BC020223|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC007535|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC073833|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC039845|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC047897|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##D44466|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC014013|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC032445|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC112344|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC114434|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK312528|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC001053|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307513|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##NM_025139|ARMC9|80210|armadillo repeat containing 9##BX537956|ARMC9|80210|armadillo repeat containing 9##AK309395|ARMC9|80210|armadillo repeat containing 9##AY219922|ARMC9|80210|armadillo repeat containing 9##AY929062|ARMC9|80210|armadillo repeat containing 9	0.998701	0.0	denovo_WM_7:-37:0.479	denovo_WM_7:-38:0.427
chr21	18800520	18800646	reg1003049.p2	7.646	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-1698042	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-1698258	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-2363366	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	84580	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	84788	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	184557	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	0.988544	0.0	denovo_WM_7:-49:0.211
chr11	15991708	15991858	reg1004170.p2	7.645	+	AB236158 NM_001042536	-855300	+	AB236159 NM_001031853	-857814	+	BC008428 AK291188 BC092468 NM_000728	-896657	+	AL136780 AK310506 BC047064 NM_001145819 NM_017508	432618	-	BC037866 NM_001145811	438644	-	AF309034 NM_033326	506142	-	AB236158|INSC|387755|inscuteable homolog (Drosophila)##NM_001042536|INSC|387755|inscuteable homolog (Drosophila)##AB236159|INSC|387755|inscuteable homolog (Drosophila)##NM_001031853|INSC|387755|inscuteable homolog (Drosophila)##BC008428|CALCB|797|calcitonin-related polypeptide beta##AK291188|CALCB|797|calcitonin-related polypeptide beta##BC092468|CALCB|797|calcitonin-related polypeptide beta##NM_000728|CALCB|797|calcitonin-related polypeptide beta##AL136780|SOX6|55553|SRY (sex determining region Y)-box 6##AK310506|SOX6|55553|SRY (sex determining region Y)-box 6##BC047064|SOX6|55553|SRY (sex determining region Y)-box 6##NM_001145819|SOX6|55553|SRY (sex determining region Y)-box 6##NM_017508|SOX6|55553|SRY (sex determining region Y)-box 6##BC037866|SOX6|55553|SRY (sex determining region Y)-box 6##NM_001145811|SOX6|55553|SRY (sex determining region Y)-box 6##AF309034|SOX6|55553|SRY (sex determining region Y)-box 6##NM_033326|SOX6|55553|SRY (sex determining region Y)-box 6	1.081596	0.0	denovo_WM_7:4:0.852
chr19	10212645	10212768	reg1000824.p2	7.645	+	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-15644	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-15709	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	-15920	+	AY358276 BC142632 AB054064 NM_031917 AF230330	694	-	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	4283	+	NM_002566 BC073827	9498	+	AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66##AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11	1.983265	0.0	denovo_WM_7:-70:0.330	denovo_WM_7:-71:0.330	denovo_WM_7:-72:0.330
chr2	101868715	101868895	reg1004648.p2	7.645	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	-101022	-	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-250083	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-432039	+	TSC_hg19_v1_chr2_+_101869347 NM_017546	532	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	587	+	AM392566 AB463234 TSC_hg19_v1_chr2_-_101925153 BC019355 BC032328 AK074985 AK075141 AY450390 BC045743 AK129799 NM_173647	56337	-	AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29##AM392566|RNF149|284996|ring finger protein 149##BC019355|RNF149|284996|ring finger protein 149##BC032328|RNF149|284996|ring finger protein 149##AK074985|RNF149|284996|ring finger protein 149##AK075141|RNF149|284996|ring finger protein 149##AY450390|RNF149|284996|ring finger protein 149##BC045743|RNF149|284996|ring finger protein 149##AK129799|RNF149|284996|ring finger protein 149##NM_173647|RNF149|284996|ring finger protein 149	0.0	0.0	
chr4	187058725	187058827	reg1003508.p2	7.644	+	BC017954 NM_003265 AK314208 BC068487 BC094737 TSC_hg19_v1_chr4_+_186990309 BC059372 BC096333 BC096334 BC096335 DQ445682 U88879	-68447	+	NM_021069	-180907	-	AK295742 AK056628 BC035329 AB018320 TSC_hg19_v1_chr4_-_186877527	-181304	-	NM_015398 TSC_hg19_v1_chr4_+_187065998 BC142992 BC110816	7269	+	NM_001006655 AF173894	11582	+	TSC_hg19_v1_chr4_+_187112641 AY422002 NM_207352	53884	+	BC017954|TLR3|7098|toll-like receptor 3##NM_003265|TLR3|7098|toll-like receptor 3##AK314208|TLR3|7098|toll-like receptor 3##BC068487|TLR3|7098|toll-like receptor 3##BC094737|TLR3|7098|toll-like receptor 3##BC059372|TLR3|7098|toll-like receptor 3##BC096333|TLR3|7098|toll-like receptor 3##BC096334|TLR3|7098|toll-like receptor 3##BC096335|TLR3|7098|toll-like receptor 3##DQ445682|TLR3|7098|toll-like receptor 3##U88879|TLR3|7098|toll-like receptor 3##NM_021069|SORBS2|8470|sorbin and SH3 domain containing 2##AK295742|SORBS2|8470|sorbin and SH3 domain containing 2##AK056628|SORBS2|8470|sorbin and SH3 domain containing 2##BC035329|SORBS2|8470|sorbin and SH3 domain containing 2##AB018320|SORBS2|8470|sorbin and SH3 domain containing 2##NM_015398|FAM149A|25854|family with sequence similarity 149, member A##BC142992|FAM149A|25854|family with sequence similarity 149, member A##BC110816|FAM149A|25854|family with sequence similarity 149, member A##NM_001006655|FAM149A|25854|family with sequence similarity 149, member A##AF173894|FAM149A|25854|family with sequence similarity 149, member A##AY422002|CYP4V2|285440|cytochrome P450, family 4, subfamily V, polypeptide 2##NM_207352|CYP4V2|285440|cytochrome P450, family 4, subfamily V, polypeptide 2	0.346675	0.480361	CTCF.p2:10:0.480	denovo_WM_7:-25:0.347
chr17	46179213	46179331	reg1002067.p2	7.642	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-451	-	NM_006807 TSC_hg19_v1_chr17_-_46178605	-689	-	BX647976 TSC_hg19_v1_chr17_+_46126143	-53131	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	5713	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	5880	+	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	328266	-	U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##NM_006807|CBX1|10951|chromobox homolog 1##BX647976|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1	0.996443	0.0	
chr4	170217169	170217349	reg1003798.p2	7.641	+	TSC_hg19_v1_chr4_-_170192202 NM_020870	-25039	-	AK021429 TSC_hg19_v1_chr4_-_170192108	-25152	-	TSC_hg19_v1_chr4_-_170192099 BC053671	-25212	-	BC015147 BC114491 AB067488 CR933642 AL050385 TSC_hg19_v1_chr4_-_170533735 BC068201 CR936672	316377	-	TSC_hg19_v1_chr4_-_170533762 NM_001199397 NM_001199398 NM_001199399 NM_001199400 NM_012224	316510	-	TSC_hg19_v1_chr4_+_170541683 NM_001243372 NM_001829 NM_173872	324412	+	NM_020870|SH3RF1|57630|SH3 domain containing ring finger 1##AK021429|SH3RF1|57630|SH3 domain containing ring finger 1##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1##BC015147|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC114491|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AB067488|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR933642|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AL050385|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC068201|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR936672|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199397|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199398|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199399|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199400|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_012224|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001243372|CLCN3|1182|chloride channel 3##NM_001829|CLCN3|1182|chloride channel 3##NM_173872|CLCN3|1182|chloride channel 3	0.201638	0.0	
chr16	90079631	90079784	reg1004078.p2	7.640	+	BC000700 NM_024043 AK090965 AX746707	-3134	-	NM_145039 TSC_hg19_v1_chr16_-_90039285	-40445	-	TSC_hg19_v1_chr16_+_90039043 BC045753	-40660	+	AK022644 TSC_hg19_v1_chr16_-_90085865 NM_001042610	6192	-	TSC_hg19_v1_chr16_-_90086275 AK308737	6562	-	TSC_hg19_v1_chr16_-_90086302 AK090696 AX746579	6606	-	BC000700|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##NM_024043|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##AK090965|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##NM_145039|CENPBD1|92806|CENPB DNA-binding domains containing 1##BC045753|AFG3L1P|172|AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene##AK022644|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##NM_001042610|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##AK308737|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##AK090696|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1	0.995057	0.0	
chr6	41274063	41274209	reg1003924.p1	7.640	+	CU676054 DQ892009 DQ895198 AY074783 TSC_hg19_v1_chr6_-_41254418 AK223264 AK292162 AK301519 AK313104 BC017773 AF287008 NM_001242589 NM_001242590 NM_018643	-19712	-	AY358271 NM_198153 BC101780 BC105101 BC143652	-78068	+	AF534824 AK023755 BC125078 BC125079 AY358171 NM_024807	-105213	-	NM_001199509 NM_001199510 NM_004828 AJ010099 AJ010100 BC166647	29430	+	TSC_hg19_v1_chr6_+_41514135 BC040962 NM_001012426 NM_001012427 NM_138457	240023	+	TSC_hg19_v1_chr6_+_41514342 BC052803	240201	+	DQ892009|TREM1|54210|triggering receptor expressed on myeloid cells 1##DQ895198|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY074783|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK223264|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK292162|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK301519|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK313104|TREM1|54210|triggering receptor expressed on myeloid cells 1##BC017773|TREM1|54210|triggering receptor expressed on myeloid cells 1##AF287008|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242589|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242590|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_018643|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY358271|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##NM_198153|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC101780|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC105101|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC143652|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##AF534824|TREML2|79865|triggering receptor expressed on myeloid cells-like 2##AK023755|TREML2|79865|triggering receptor expressed on myeloid cells-like 2##BC125078|TREML2|79865|triggering receptor expressed on myeloid cells-like 2##BC125079|TREML2|79865|triggering receptor expressed on myeloid cells-like 2##AY358171|TREML2|79865|triggering receptor expressed on myeloid cells-like 2##NM_024807|TREML2|79865|triggering receptor expressed on myeloid cells-like 2##NM_001199509|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_001199510|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_004828|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010099|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010100|NCR2|9436|natural cytotoxicity triggering receptor 2##BC166647|NCR2|9436|natural cytotoxicity triggering receptor 2##BC040962|FOXP4|116113|forkhead box P4##NM_001012426|FOXP4|116113|forkhead box P4##NM_001012427|FOXP4|116113|forkhead box P4##NM_138457|FOXP4|116113|forkhead box P4##BC052803|FOXP4|116113|forkhead box P4	0.996177	0.947876	CTCF.p2:59:0.948
chr3	196184603	196184783	reg1004959.p4	7.639	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-25360	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-25394	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-25410	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	45885	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	57520	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	110697	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.0	0.0	
chr9	34171927	34172079	reg1004293.p2	7.638	+	TSC_hg19_v1_chr9_-_34126703 NM_015397	-45267	-	BC063823 TSC_hg19_v1_chr9_-_34126702 AB067479 DQ518909	-45308	-	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	-45417	-	AK074812 AK303711 NM_001171201 NM_001171202 NM_001171203 NM_001171204 NM_016525 AK074426 TSC_hg19_v1_chr9_+_34179021	7008	+	AK074969 TSC_hg19_v1_chr9_+_34179031	7025	+	TSC_hg19_v1_chr9_+_34179039 AK074995 BC020950 AK074745 AK295482	7037	+	NM_015397|DCAF12|25853|DDB1 and CUL4 associated factor 12##BC063823|DCAF12|25853|DDB1 and CUL4 associated factor 12##AB067479|DCAF12|25853|DDB1 and CUL4 associated factor 12##DQ518909|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK074812|UBAP1|51271|ubiquitin associated protein 1##AK303711|UBAP1|51271|ubiquitin associated protein 1##NM_001171201|UBAP1|51271|ubiquitin associated protein 1##NM_001171202|UBAP1|51271|ubiquitin associated protein 1##NM_001171203|UBAP1|51271|ubiquitin associated protein 1##NM_001171204|UBAP1|51271|ubiquitin associated protein 1##NM_016525|UBAP1|51271|ubiquitin associated protein 1##AK074426|UBAP1|51271|ubiquitin associated protein 1##AK074969|UBAP1|51271|ubiquitin associated protein 1##AK074995|UBAP1|51271|ubiquitin associated protein 1##BC020950|UBAP1|51271|ubiquitin associated protein 1##AK074745|UBAP1|51271|ubiquitin associated protein 1##AK295482|UBAP1|51271|ubiquitin associated protein 1	0.998941	0.0	
chr10	63701169	63701349	reg1004547.p2	7.637	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-39828	+	NM_032199	-40247	+	BC041932 NM_173554	-278541	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	107837	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	327280	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	432784	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.991628	0.0	denovo_WM_7:23:0.695
chr11	108045270	108045450	reg1003556.p2	7.637	+	TSC_hg19_v1_chr11_+_107992293 D90228 NM_000019 AK312574 BC010942 BC063853 AB590491	-53069	+	X81882 BC017838 TSC_hg19_v1_chr11_+_107880062 CU687672 AF017061 AF327710	-165331	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	-165733	+	U58852 AB527441 TSC_hg19_v1_chr11_-_108093291 BC136270 AK291687 X97186	47923	-	D83243 BC050561 TSC_hg19_v1_chr11_-_108093366 BC040356 BC094769 AK290020 NM_002519	48012	-	NM_000051	48198	+	D90228|ACAT1|38|acetyl-CoA acetyltransferase 1##NM_000019|ACAT1|38|acetyl-CoA acetyltransferase 1##AK312574|ACAT1|38|acetyl-CoA acetyltransferase 1##BC010942|ACAT1|38|acetyl-CoA acetyltransferase 1##BC063853|ACAT1|38|acetyl-CoA acetyltransferase 1##X81882|CUL5|8065|cullin 5##BC017838|CUL5|8065|cullin 5##AF017061|CUL5|8065|cullin 5##AF327710|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5##U58852|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC136270|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK291687|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##X97186|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##D83243|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC050561|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC040356|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC094769|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK290020|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_002519|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_000051|ATM|472|ataxia telangiectasia mutated	1.988777	0.0	denovo_WM_7:-8:0.455	denovo_WM_7:-9:0.455
chr3	49380735	49380878	reg1004788.p1	7.637	+	TSC_hg19_v1_chr3_-_49377520 NM_001251877 NM_003363 NM_199443	-3278	-	TSC_hg19_v1_chr3_-_49377487 BC125131 BC125130	-3307	-	TSC_hg19_v1_chr3_-_49377482 AK291795	-3326	-	TSC_hg19_v1_chr3_-_49395733 X13709 X13710 AK225835 BC007865 BC070258 BC000742	14909	-	M21304 TSC_hg19_v1_chr3_-_49395760 AK130160 D28370 NM_000581 NM_201397	14964	-	TSC_hg19_v1_chr3_-_49399989 BC000946	19208	-	NM_001251877|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##NM_003363|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##NM_199443|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##BC125131|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##BC125130|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK291795|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##X13709|GPX1|2876|glutathione peroxidase 1##X13710|GPX1|2876|glutathione peroxidase 1##AK225835|GPX1|2876|glutathione peroxidase 1##BC007865|GPX1|2876|glutathione peroxidase 1##BC070258|GPX1|2876|glutathione peroxidase 1##BC000742|GPX1|2876|glutathione peroxidase 1##M21304|GPX1|2876|glutathione peroxidase 1##AK130160|GPX1|2876|glutathione peroxidase 1##NM_000581|GPX1|2876|glutathione peroxidase 1##NM_201397|GPX1|2876|glutathione peroxidase 1##BC000946|RHOA|387|ras homolog gene family, member A	0.993913	0.0	denovo_WM_7:-27:0.981
chr17	41650929	41651073	reg1003949.p2	7.634	+	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-27275	-	BC016623 AK290429 AK299019 AK312934 NM_001986	-27726	-	D12765 TSC_hg19_v1_chr17_-_41622738 DQ396626	-28261	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	87914	-	NM_001040002 AK291139	88274	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	185142	-	AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC016623|ETV4|2118|ets variant 4##AK290429|ETV4|2118|ets variant 4##AK299019|ETV4|2118|ets variant 4##AK312934|ETV4|2118|ets variant 4##NM_001986|ETV4|2118|ets variant 4##D12765|ETV4|2118|ets variant 4##DQ396626|ETV4|2118|ets variant 4##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin	0.999416	0.0	denovo_WM_7:17:0.848
chr22	41295169	41295309	reg1004248.p2	7.634	+	AB528124 CU013018 CU013306 CR456468 BC112135 AF085232 NM_145174	-37176	-	TSC_hg19_v1_chr22_+_41253101 NM_001204827 NM_022098 AK301635 BX648018 BC037424 AL365514 BC005331 BC001681 BC004989 AX721172 AK313770 AL834310 CR456442 BC001208 BC023654 BC045166 BC053556 BC011632 AB527238 CR457396 CU013040 CU013328 CU674830	-42119	+	TSC_hg19_v1_chr22_-_41252691 NM_003932	-42549	-	TSC_hg19_v1_chr22_+_41347364 NM_014248	52109	+	TSC_hg19_v1_chr22_+_41347389 BC017370 CR456560 AK315722 AF140598 BC001466 AB590096 AF142059 CU013160 CU013448 CU674722 AF085906 AY099360	52167	+	TSC_hg19_v1_chr22_+_41487787 U01877	192551	+	CU013018|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CU013306|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CR456468|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##BC112135|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##AF085232|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_145174|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_001204827|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_022098|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK301635|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BX648018|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC037424|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL365514|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC005331|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001681|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC004989|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK313770|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL834310|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR456442|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001208|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC023654|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC045166|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC053556|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC011632|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR457396|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_003932|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##NM_014248|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC017370|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CR456560|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK315722|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF140598|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC001466|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF142059|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013160|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013448|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF085906|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AY099360|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##U01877|EP300|2033|E1A binding protein p300	0.0	0.030794	
chr2	8583119	8583249	reg1005226.p1	7.634	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1525597	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1565321	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1576481	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	239019	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	394535	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	560637	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.999275	0.0	denovo_WM_7:0:0.477	denovo_WM_7:-1:0.477
chr7	26896935	26897073	reg1004629.p2	7.634	+	AK093321 AX748054 NM_001145531	-219515	+	TSC_hg19_v1_chr7_+_26438248 AK056484	-458742	+	AK309162 NM_001199838	-493060	+	AF072166 AJ004886 AB528968 DQ892896 DQ896144 AB014486 TSC_hg19_v1_chr7_-_26904210 BC002893 AK222885 AK313209 BC036044 AF051323 NM_003930	7189	-	S79869 S79871 S79910 U37431 AB464569 CU689416 DQ890884 DQ894038 U10421 AK308067 BC032547 AK313514 NM_005522 NM_153620	238570	-	TSC_hg19_v1_chr7_+_27135786 BC031342	238781	+	AK093321|C7orf71|285941|chromosome 7 open reading frame 71##NM_001145531|C7orf71|285941|chromosome 7 open reading frame 71##AK056484|LOC441204|441204|uncharacterized LOC441204##AK309162|SNX10|29887|sorting nexin 10##NM_001199838|SNX10|29887|sorting nexin 10##AF072166|SKAP2|8935|src kinase associated phosphoprotein 2##AJ004886|SKAP2|8935|src kinase associated phosphoprotein 2##DQ892896|SKAP2|8935|src kinase associated phosphoprotein 2##DQ896144|SKAP2|8935|src kinase associated phosphoprotein 2##AB014486|SKAP2|8935|src kinase associated phosphoprotein 2##BC002893|SKAP2|8935|src kinase associated phosphoprotein 2##AK222885|SKAP2|8935|src kinase associated phosphoprotein 2##AK313209|SKAP2|8935|src kinase associated phosphoprotein 2##BC036044|SKAP2|8935|src kinase associated phosphoprotein 2##AF051323|SKAP2|8935|src kinase associated phosphoprotein 2##NM_003930|SKAP2|8935|src kinase associated phosphoprotein 2##S79869|HOXA1|3198|homeobox A1##S79871|HOXA1|3198|homeobox A1##S79910|HOXA1|3198|homeobox A1##U37431|HOXA1|3198|homeobox A1##DQ890884|HOXA1|3198|homeobox A1##DQ894038|HOXA1|3198|homeobox A1##U10421|HOXA1|3198|homeobox A1##AK308067|HOXA1|3198|homeobox A1##BC032547|HOXA1|3198|homeobox A1##AK313514|HOXA1|3198|homeobox A1##NM_005522|HOXA1|3198|homeobox A1##NM_153620|HOXA1|3198|homeobox A1##BC031342|HOTAIRM1|100506311|HOXA transcript antisense RNA, myeloid-specific 1 (non-protein coding)	0.998844	0.0	
chr1	101854750	101854906	reg1003789.p1	7.633	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-152258	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-152447	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-363395	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	607659	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	607962	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1641955	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	0.183275	0.0	
chr3	18465216	18465396	reg1002547.p2	7.633	+	TSC_hg19_v1_chr3_-_17784106 NM_001134380	-681139	-	D86965 NM_014744	-682908	-	AK310539 NM_001134381	-723795	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	1491	-	BC001744 NM_001131010	14927	-	AK295633 AY053503 NM_144633 AB209053 AK309034	724698	+	NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8	1.61082	0.0	denovo_WM_7:-58:0.500	denovo_WM_7:-61:0.229	denovo_WM_7:-81:0.337
chr2	3133746	3133906	reg1004129.p1	7.632	+	TSC_hg19_v1_chr2_-_2335085 AK307797	-798742	-	BC137272 BC137273 AF036943 TSC_hg19_v1_chr2_-_2335017 AB029029 BC150281 NM_015025	-798861	-	BC031690 TSC_hg19_v1_chr2_-_1946938	-1186920	-	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	247730	-	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	249679	+	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	389472	-	AK307797|MYT1L|23040|myelin transcription factor 1-like##BC137272|MYT1L|23040|myelin transcription factor 1-like##BC137273|MYT1L|23040|myelin transcription factor 1-like##AF036943|MYT1L|23040|myelin transcription factor 1-like##AB029029|MYT1L|23040|myelin transcription factor 1-like##BC150281|MYT1L|23040|myelin transcription factor 1-like##NM_015025|MYT1L|23040|myelin transcription factor 1-like##BC031690|MYT1L|23040|myelin transcription factor 1-like##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1	0.992851	0.0	
chr10	89035701	89035830	reg1004685.p1	7.630	+	BC092519 NM_001099338 AB095940	-50535	+	TSC_hg19_v1_chr10_+_88854962 AK022978 NM_019054	-180832	+	TSC_hg19_v1_chr10_-_88854695 NM_005271	-181005	-	TSC_hg19_v1_chr10_-_89102098 AK091716	66331	-	TSC_hg19_v1_chr10_-_89102128 AK309777 AK311174	66376	-	TSC_hg19_v1_chr10_-_89102214 BC047063	66493	-	BC092519|FAM22A|728118|family with sequence similarity 22, member A##NM_001099338|FAM22A|728118|family with sequence similarity 22, member A##AB095940|FAM22D|728130|family with sequence similarity 22, member D##AK022978|FAM35A|54537|family with sequence similarity 35, member A##NM_019054|FAM35A|54537|family with sequence similarity 35, member A##NM_005271|GLUD1|2746|glutamate dehydrogenase 1##AK309777|LOC728190|728190|uncharacterized LOC728190##AK311174|LOC728190|728190|uncharacterized LOC728190##BC047063|LOC728190|728190|uncharacterized LOC728190	0.986528	0.0	
chr16	88663016	88663141	reg1004542.p1	7.630	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-26209	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	-26250	+	AK300254 AK302716 TSC_hg19_v1_chr16_+_88636810	-26268	+	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	41925	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	54371	-	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	66439	-	BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18##AK300254|ZC3H18|124245|zinc finger CCCH-type containing 18##AK302716|ZC3H18|124245|zinc finger CCCH-type containing 18##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase	0.88401	0.0	denovo_WM_7:-10:0.825
chr6	157990723	157990855	reg1004354.p1	7.630	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-188250	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-245572	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-246205	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	253500	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	253585	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	412098	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.115882	0.0	
chr2	114477888	114478030	reg1005648.p1	7.629	+	TSC_hg19_v1_chr2_+_114384849 AK289496 AF095350 AF095351 BC126129 BC144050 BC144052	-93053	+	TSC_hg19_v1_chr2_+_114384811 BC111008 NM_007082 NM_013412	-93145	+	TSC_hg19_v1_chr2_-_114384648 BC000596 BC105600	-93311	-	AF529364 CU676258 TSC_hg19_v1_chr2_-_114514079 AY358620	36119	-	AK025657 AK315719 TSC_hg19_v1_chr2_-_114514220 BC050096 BC018537 NM_025181	36338	-	TSC_hg19_v1_chr2_+_114647549 BC044590 NM_005721 AF127773	169588	+	AK289496|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095350|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095351|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC126129|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144050|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144052|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC111008|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##NM_007082|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##NM_013412|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC000596|RPL23AP7|118433|ribosomal protein L23a pseudogene 7##BC105600|RPL23AP7|118433|ribosomal protein L23a pseudogene 7##AF529364|SLC35F5|80255|solute carrier family 35, member F5##AY358620|SLC35F5|80255|solute carrier family 35, member F5##AK025657|SLC35F5|80255|solute carrier family 35, member F5##AK315719|SLC35F5|80255|solute carrier family 35, member F5##BC050096|SLC35F5|80255|solute carrier family 35, member F5##BC018537|SLC35F5|80255|solute carrier family 35, member F5##NM_025181|SLC35F5|80255|solute carrier family 35, member F5##BC044590|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##NM_005721|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AF127773|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)	0.99701	0.122557	denovo_WM_7:-46:0.424	denovo_WM_7:-47:0.424
chr2	42523447	42523580	reg1005102.p1	7.628	+	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	-126938	+	AB528999 TSC_hg19_v1_chr2_+_42275979	-247552	+	TSC_hg19_v1_chr2_+_42275160 NM_138370	-248381	+	AF127788 BT007371 CR542208 CU675543 DQ890566 DQ893729 TSC_hg19_v1_chr2_-_42588354 AB007618 BC005251 BC007095 NM_004718	64820	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	197045	-	TSC_hg19_v1_chr2_-_42721118 AF454547 AF454548 BC071558 AF348982 NM_133329 NM_172344	197690	-	NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##AF127788|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BT007371|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##CR542208|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ890566|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ893729|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB007618|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC005251|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC007095|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##NM_004718|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF454547|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF454548|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##BC071558|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF348982|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##NM_133329|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##NM_172344|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3	0.045194	0.0	
chr4	175849613	175849755	reg1003147.p1	7.627	+	NM_001130703 NM_001130704 NM_001130705 NM_014269 AK292410 BC036070	-10151	+	U93917 BC036086 NM_001042543 NM_006529	-99264	-	AK300524 NM_000860 NM_001145816	-405893	-	CU692222 CU692662 DQ892372 DQ895581 TSC_hg19_v1_chr4_-_176733403	883709	-	BC010461 BC022508 TSC_hg19_v1_chr4_-_176733419 D49958	883757	-	BC044612 BC053954 TSC_hg19_v1_chr4_-_176733905	884222	-	NM_001130703|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130704|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130705|ADAM29|11086|ADAM metallopeptidase domain 29##NM_014269|ADAM29|11086|ADAM metallopeptidase domain 29##AK292410|ADAM29|11086|ADAM metallopeptidase domain 29##BC036070|ADAM29|11086|ADAM metallopeptidase domain 29##U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3##AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##DQ892372|GPM6A|2823|glycoprotein M6A##DQ895581|GPM6A|2823|glycoprotein M6A##BC010461|GPM6A|2823|glycoprotein M6A##BC022508|GPM6A|2823|glycoprotein M6A##D49958|GPM6A|2823|glycoprotein M6A##BC044612|GPM6A|2823|glycoprotein M6A##BC053954|GPM6A|2823|glycoprotein M6A	0.985893	0.0	denovo_WM_7:43:0.975
chr22	46799875	46799980	reg1004087.p1	7.626	+	TSC_hg19_v1_chr22_+_46731810 AK303020	-68117	+	TSC_hg19_v1_chr22_+_46731615 AB178028 AK001002 AK295173 AK290712 BC066593 BC080631 CR456445 BC027991 BC012076 AB463324 CU013043 CU013331	-68298	+	NM_018006 AY062123 DQ309998 DQ309999 DQ310000	-68618	+	AF231024 NM_014246 TSC_hg19_v1_chr22_-_46933142	133187	-	CR456470 NM_015124 BC129837 AB463563 CU013020 CU013308	222749	+	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	334152	-	AK303020|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AB178028|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK001002|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK295173|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK290712|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC066593|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC080631|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CR456445|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC027991|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC012076|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013043|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013331|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##NM_018006|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AY062123|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ309998|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ309999|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##DQ310000|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AF231024|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##NM_014246|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##CR456470|GRAMD4|23151|GRAM domain containing 4##NM_015124|GRAMD4|23151|GRAM domain containing 4##BC129837|GRAMD4|23151|GRAM domain containing 4##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase	1.986613	0.0	denovo_WM_7:-27:0.645	denovo_WM_7:-48:0.200	denovo_WM_7:-49:0.200	denovo_WM_7:-50:0.201
chr20	52510153	52510293	reg1003941.p2	7.625	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-299424	-	AF041259 NM_006526	-310588	-	AK302570 NM_001193421	-708402	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	176839	-	AK315220 NM_003657	177080	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	280297	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.639438	0.0	denovo_WM_7:31:0.616
chr2	217282548	217282714	reg1005245.p2	7.624	+	TSC_hg19_v1_chr2_+_217277487 NM_001127207 AF432223 BC043341	-5153	+	NM_014140 TSC_hg19_v1_chr2_+_217277188 AK023780	-5433	+	TSC_hg19_v1_chr2_-_217236666 AB037820 NM_020814	-45924	-	NM_000998 TSC_hg19_v1_chr2_+_217363566 AK289472 BC016748 BC067789 L22154 AK023419 AK291857 BC063476 L06499 BC014262 BC082239 BC047872	80922	+	TSC_hg19_v1_chr2_+_217498142 NM_000597 X16302 BC071967 AB209509 BC004312 BC009902 BC012769 M35410	215505	+	TSC_hg19_v1_chr2_+_217498216 DQ893450 EU176752	215667	+	NM_001127207|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AF432223|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##BC043341|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##NM_014140|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AK023780|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AB037820|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_020814|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_000998|RPL37A|6168|ribosomal protein L37a##AK289472|RPL37A|6168|ribosomal protein L37a##BC016748|RPL37A|6168|ribosomal protein L37a##BC067789|RPL37A|6168|ribosomal protein L37a##L22154|RPL37A|6168|ribosomal protein L37a##AK023419|RPL37A|6168|ribosomal protein L37a##AK291857|RPL37A|6168|ribosomal protein L37a##BC063476|RPL37A|6168|ribosomal protein L37a##L06499|RPL37A|6168|ribosomal protein L37a##BC014262|RPL37A|6168|ribosomal protein L37a##BC082239|RPL37A|6168|ribosomal protein L37a##BC047872|RPL37A|6168|ribosomal protein L37a##NM_000597|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##X16302|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC071967|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##AB209509|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC004312|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC009902|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##BC012769|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##M35410|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##DQ893450|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa##EU176752|IGFBP2|3485|insulin-like growth factor binding protein 2, 36kDa	0.0	0.0	
chr3	17223708	17223847	reg1003978.p1	7.624	+	BC036392 NM_015184	-249196	+	AB029015 NM_001144382	-297326	+	U65918 U66726 U66078 BC027595 NM_001351	-576811	-	AK310539 NM_001134381	517734	-	D86965 NM_014744	558621	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	560390	-	BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5	0.0	0.0	
chr16	70443982	70444161	reg1003655.p2	7.621	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-63243	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-110923	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-110995	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	28910	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	44428	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	58769	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	2.776274	0.0	denovo_WM_7:28:0.544	denovo_WM_7:77:0.860	denovo_WM_7:92:0.860
chr13	84128767	84128915	reg1004976.p1	7.620	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-3213777	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-3215799	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-4073286	+	TSC_hg19_v1_chr13_-_84456424 BC051738	327584	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	327659	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	2244598	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	1.237316	0.0	denovo_WM_7:-33:0.256	denovo_WM_7:-48:0.246
chr9	107369156	107369310	reg1004758.p1	7.620	+	AB529292 NM_001004481 BC136824 BC136826	-1305	-	NM_001004482 BC136842 BC136843	-7493	-	AB463957 NM_001004483	-37785	+	AB463958 NM_001001956	11251	-	BC140916 AB587601 NM_001004484	87447	+	TSC_hg19_v1_chr9_+_107509977 BC005935 NM_015469 AK301410 AF161417 AK024015 AL117557 BC045830 CU675195	140777	+	NM_001004481|OR13C2|392376|olfactory receptor, family 13, subfamily C, member 2##BC136824|OR13C2|392376|olfactory receptor, family 13, subfamily C, member 2##BC136826|OR13C2|392376|olfactory receptor, family 13, subfamily C, member 2##NM_001004482|OR13C5|138799|olfactory receptor, family 13, subfamily C, member 5##BC136842|OR13C5|138799|olfactory receptor, family 13, subfamily C, member 5##BC136843|OR13C5|138799|olfactory receptor, family 13, subfamily C, member 5##NM_001004483|OR13C8|138802|olfactory receptor, family 13, subfamily C, member 8##NM_001001956|OR13C9|286362|olfactory receptor, family 13, subfamily C, member 9##BC140916|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##NM_001004484|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##BC005935|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##NM_015469|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK301410|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AF161417|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK024015|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AL117557|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##BC045830|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)	1.852916	0.0	denovo_WM_7:21:0.835	denovo_WM_7:-32:0.425	denovo_WM_7:-33:0.247
chr1	198904765	198904943	reg1005017.p1	7.618	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-296524	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-296629	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-296681	+	TSC_hg19_v1_chr1_-_198906559 EF413001	1693	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1092015	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1106870	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	0.0	0.0	
chr19	937545	937677	reg1003315.p1	7.618	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-11600	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-20218	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-24387	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	46723	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	62754	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	83447	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	0.99967	0.0	
chr2	216176269	216176449	reg1004640.p1	7.618	+	BC144073 AY219711 NM_173076	-173250	-	AY033486 NM_015657	-279550	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	-502000	-	NM_004044 TSC_hg19_v1_chr2_+_216176781 AK313066 D82348 AK298142	379	+	D89976 TSC_hg19_v1_chr2_+_216176813	453	+	TSC_hg19_v1_chr2_+_216176824 AB062403 BC008879 AB590190 DQ893262 DQ896591 CU679167	482	+	BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##NM_004044|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK313066|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D82348|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK298142|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D89976|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AB062403|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##BC008879|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ893262|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ896591|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	2.842648	0.0	denovo_WM_7:-9:0.353	denovo_WM_7:-10:0.225	denovo_WM_7:-12:0.285	denovo_WM_7:-30:0.482	denovo_WM_7:-31:0.490	denovo_WM_7:-47:0.246	denovo_WM_7:-48:0.246	denovo_WM_7:-49:0.247	denovo_WM_7:-50:0.255
chr1	101702182	101702341	reg1004420.p1	7.617	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-210828	+	BC003660 TSC_hg19_v1_chr1_-_101491341 AK125485 BC053857 AF132964 AF157319 AF248965 AK298181 AK225469 AK225707 AK225951 AK289351 NM_001077394 NM_001077395 NM_015958 AF161492	-210922	-	TSC_hg19_v1_chr1_+_101361700 AF233345 AB463270 AF529197 AM392927 AY094606	-340508	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	120	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	309	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	760226	-	AK125485|DPH5|51611|DPH5 homolog (S. cerevisiae)##BC053857|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF132964|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF157319|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF248965|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK298181|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK225469|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK225707|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK225951|DPH5|51611|DPH5 homolog (S. cerevisiae)##AK289351|DPH5|51611|DPH5 homolog (S. cerevisiae)##NM_001077394|DPH5|51611|DPH5 homolog (S. cerevisiae)##NM_001077395|DPH5|51611|DPH5 homolog (S. cerevisiae)##NM_015958|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF161492|DPH5|51611|DPH5 homolog (S. cerevisiae)##AF233345|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##AF529197|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##AM392927|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##AY094606|SLC30A7|148867|solute carrier family 30 (zinc transporter), member 7##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3	1.88057	0.0	denovo_WM_7:31:0.580	denovo_WM_7:46:0.686
chr11	120644421	120644541	reg1004753.p1	7.617	+	AB384776 NM_014619 S67803	-113454	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-262016	+	BC063117 NM_001198665 NM_015313	-436864	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	250329	+	NM_005422	328893	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	518924	+	NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_005422|TECTA|7007|tectorin alpha##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like	0.0	0.357155	CTCF.p2:54:0.357
chr14	73868118	73868283	reg1003972.p2	7.617	+	NM_173462 TSC_hg19_v1_chr14_+_73704238 BC042057 BC136623 BC144315	-163949	+	AJ008005 TSC_hg19_v1_chr14_+_73603214	-264988	+	TSC_hg19_v1_chr14_+_73603184 L42110	-265020	+	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	57032	-	TSC_hg19_v1_chr14_-_73925274 BX248781	57067	-	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	57091	-	NM_173462|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC042057|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC136623|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC144315|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##AJ008005|PSEN1|5663|presenilin 1##L42110|PSEN1|5663|presenilin 1##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)	1.994077	0.0	denovo_WM_7:-82:0.914
chr15	40567008	40567144	reg1003447.p1	7.617	+	TSC_hg19_v1_chr15_+_40545348 BC035596	-21710	+	AK095915 NM_001039905 BC171826	-21937	-	NM_020168 AJ236915	-35023	+	NM_001190479	7710	-	BT006905 CU674468 TSC_hg19_v1_chr15_-_40599904 AB209583	32820	-	TSC_hg19_v1_chr15_-_40599986 BC000939	32915	-	BC035596|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK095915|C15orf56|644809|chromosome 15 open reading frame 56##NM_001039905|C15orf56|644809|chromosome 15 open reading frame 56##NM_020168|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AJ236915|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_001190479|ANKRD63|100131244|ankyrin repeat domain 63##BT006905|PLCB2|5330|phospholipase C, beta 2##AB209583|PLCB2|5330|phospholipase C, beta 2##BC000939|PLCB2|5330|phospholipase C, beta 2	0.0	1.952522	CTCF.p2:16:1.000	CTCF.p2:-25:0.953
chr17	55979543	55979682	reg1004915.p1	7.616	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	-52208	-	AK093888 AX748353 NM_170721	-645239	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-645639	+	AK000746 NM_017949	1137	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	53064	-	TSC_hg19_v1_chr17_+_56065413 AB593183	85862	+	AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	1.979939	0.0	denovo_WM_7:-30:0.970	denovo_WM_7:-47:0.633
chrX	9422507	9422619	reg1004428.p1	7.615	+	BC120955 BC120956 NM_205849	-421461	-	BC113449 BC143805 NM_001171186 BC112022 AF494343 NM_174951	-653163	-	TSC_hg19_v1_chrX_-_8700193 BC137426 BC137427 M97252 NM_000216 S60085	-722356	-	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	8784	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	10671	+	Z48804 BC015657 BC068977 NM_000273	311397	-	BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##BC113449|FAM9A|171482|family with sequence similarity 9, member A##BC143805|FAM9A|171482|family with sequence similarity 9, member A##NM_001171186|FAM9A|171482|family with sequence similarity 9, member A##BC112022|FAM9A|171482|family with sequence similarity 9, member A##AF494343|FAM9A|171482|family with sequence similarity 9, member A##NM_174951|FAM9A|171482|family with sequence similarity 9, member A##BC137426|KAL1|3730|Kallmann syndrome 1 sequence##BC137427|KAL1|3730|Kallmann syndrome 1 sequence##M97252|KAL1|3730|Kallmann syndrome 1 sequence##NM_000216|KAL1|3730|Kallmann syndrome 1 sequence##S60085|KAL1|3730|Kallmann syndrome 1 sequence##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143	1.978912	0.0	denovo_WM_7:20:0.818
chr12	125165904	125166040	reg1004545.p2	7.614	+	AB209089 NM_001077261 NM_001206654 NM_006312 TSC_hg19_v1_chr12_-_125052138	-113897	-	TSC_hg19_v1_chr12_-_125002875 BC033087	-163113	-	AK126577 NM_181709	-392263	+	DQ892837 DQ896083 BC093732 BC112037 BC143319 Z22555 TSC_hg19_v1_chr12_-_125348344	182333	-	TSC_hg19_v1_chr12_-_125348408 AB209436 BC022087 BC080647 AK304730	182405	-	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	182501	-	AB209089|NCOR2|9612|nuclear receptor corepressor 2##NM_001077261|NCOR2|9612|nuclear receptor corepressor 2##NM_001206654|NCOR2|9612|nuclear receptor corepressor 2##NM_006312|NCOR2|9612|nuclear receptor corepressor 2##AK126577|FAM101A|144347|family with sequence similarity 101, member A##NM_181709|FAM101A|144347|family with sequence similarity 101, member A##DQ892837|SCARB1|949|scavenger receptor class B, member 1##DQ896083|SCARB1|949|scavenger receptor class B, member 1##BC093732|SCARB1|949|scavenger receptor class B, member 1##BC112037|SCARB1|949|scavenger receptor class B, member 1##BC143319|SCARB1|949|scavenger receptor class B, member 1##Z22555|SCARB1|949|scavenger receptor class B, member 1##AB209436|SCARB1|949|scavenger receptor class B, member 1##BC022087|SCARB1|949|scavenger receptor class B, member 1##BC080647|SCARB1|949|scavenger receptor class B, member 1##AK304730|SCARB1|949|scavenger receptor class B, member 1##NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1	0.0	0.0	
chr1	67808278	67808458	reg1004125.p2	7.612	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-34805	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-35287	+	AF461422 NM_144701	-176200	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	87655	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	87704	-	TSC_hg19_v1_chr1_-_67896086 AK312256	87717	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.995666	0.0	denovo_WM_7:84:0.456	denovo_WM_7:85:0.456
chr19	2427926	2428051	reg1004761.p1	7.611	+	NM_012458 TSC_hg19_v1_chr19_-_2427893	-92	-	AF152352 DQ891755 DQ894937 TSC_hg19_v1_chr19_-_2427552 AK024764 AF144700 BC008607	-435	-	AB109390 AB527446 AJ488946 AJ488947 NM_182973	-38213	+	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	28902	-	TSC_hg19_v1_chr19_-_2456941 BC006551	28948	-	TSC_hg19_v1_chr19_-_2456958 NM_032737	28972	-	NM_012458|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AF152352|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ891755|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ894937|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AK024764|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AF144700|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BC008607|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AB109390|TMPRSS9|360200|transmembrane protease, serine 9##AJ488946|TMPRSS9|360200|transmembrane protease, serine 9##AJ488947|TMPRSS9|360200|transmembrane protease, serine 9##NM_182973|TMPRSS9|360200|transmembrane protease, serine 9##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##NM_032737|LMNB2|84823|lamin B2	0.0	0.0	
chr2	32182164	32182286	reg1007940.p1	7.611	+	EU832809 GQ129244 HQ258121 M74047 EF560740 AK316597 BC112252 BC113641 NM_000348	-376222	-	TSC_hg19_v1_chr2_-_31637599 NM_000379	-544614	-	TSC_hg19_v1_chr2_-_31637569 U39487 D11456 U06117	-544654	-	TSC_hg19_v1_chr2_-_32235713 AF363446 BC018733 NM_001137602 NM_015955	53433	-	TSC_hg19_v1_chr2_-_32235732 AB041018	53503	-	TSC_hg19_v1_chr2_-_32235815 BC070046	53597	-	EU832809|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##GQ129244|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##HQ258121|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##M74047|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##EF560740|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##AK316597|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC112252|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC113641|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000348|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000379|XDH|7498|xanthine dehydrogenase##U39487|XDH|7498|xanthine dehydrogenase##D11456|XDH|7498|xanthine dehydrogenase##U06117|XDH|7498|xanthine dehydrogenase##AF363446|MEMO1|51072|mediator of cell motility 1##BC018733|MEMO1|51072|mediator of cell motility 1##NM_001137602|MEMO1|51072|mediator of cell motility 1##NM_015955|MEMO1|51072|mediator of cell motility 1##AB041018|MEMO1|51072|mediator of cell motility 1##BC070046|MEMO1|51072|mediator of cell motility 1	0.997464	0.0	denovo_WM_7:-3:0.310	denovo_WM_7:-4:0.310	denovo_WM_7:-5:0.310
chr19	58330699	58330879	reg1002846.p2	7.610	+	AK097041 AK293445 NM_024762	-4509	-	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-49660	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-49772	+	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	298	+	AK122919 NM_001204818 AK299091	10881	+	NM_001204817 NM_032828 TSC_hg19_v1_chr19_+_58361208	30406	+	AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein##NM_001204817|ZNF587|84914|zinc finger protein 587##NM_032828|ZNF587|84914|zinc finger protein 587	0.031606	0.0	
chr1	182396122	182396302	reg1004729.p2	7.609	+	AJ515384 NM_172000	-26462	-	TSC_hg19_v1_chr1_-_182361366 AK122784 NM_001033044 NM_002065	-34872	-	TSC_hg19_v1_chr1_-_182360928 AY947343 BC018992 BC011700 X59834 BC010037 BC011852 Y00387 BC051726 BX537384	-35277	-	NM_001137669 AK302768 BC142944 AL136902	23061	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	162171	-	CU675308 TSC_hg19_v1_chr1_+_182569465	173234	+	AJ515384|TEDDM1|127670|transmembrane epididymal protein 1##NM_172000|TEDDM1|127670|transmembrane epididymal protein 1##AK122784|GLUL|2752|glutamate-ammonia ligase##NM_001033044|GLUL|2752|glutamate-ammonia ligase##NM_002065|GLUL|2752|glutamate-ammonia ligase##AY947343|GLUL|2752|glutamate-ammonia ligase##BC018992|GLUL|2752|glutamate-ammonia ligase##BC011700|GLUL|2752|glutamate-ammonia ligase##X59834|GLUL|2752|glutamate-ammonia ligase##BC010037|GLUL|2752|glutamate-ammonia ligase##BC011852|GLUL|2752|glutamate-ammonia ligase##Y00387|GLUL|2752|glutamate-ammonia ligase##BC051726|GLUL|2752|glutamate-ammonia ligase##BX537384|GLUL|2752|glutamate-ammonia ligase##NM_001137669|RGSL1|353299|regulator of G-protein signaling like 1##AK302768|RGSL1|353299|regulator of G-protein signaling like 1##BC142944|RGSL1|353299|regulator of G-protein signaling like 1##AL136902|RGSL1|353299|regulator of G-protein signaling like 1##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	0.990092	0.0	denovo_WM_7:-75:0.491	denovo_WM_7:-76:0.286	denovo_WM_7:-77:0.214
chr4	40185877	40186053	reg1004478.p1	7.608	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-127433	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-206372	-	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	-206627	-	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	12676	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	151480	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	330619	-	AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47	1.095712	0.0	denovo_WM_7:-11:0.326	denovo_WM_7:-13:0.582
chr7	101577057	101577213	reg1005313.p1	7.608	+	M74099 NM_181552	-116254	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-117926	+	BC002778 NM_138403	-304560	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	351262	+	TSC_hg19_v1_chr7_+_101928431 AB000520	351308	+	NM_001146210	419753	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.0	0.0	
chr12	116823018	116823170	reg1005696.p1	7.605	+	TSC_hg19_v1_chr12_-_116715263 AY338463	-107934	-	TSC_hg19_v1_chr12_-_116714956 BC130422 AF515599 NM_015335	-108144	-	TSC_hg19_v1_chr12_-_115121970 AK054604 NM_005996 NM_016569	-1700954	-	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	148135	+	NM_001085481	174091	+	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	352644	-	AY338463|MED13L|23389|mediator complex subunit 13-like##BC130422|MED13L|23389|mediator complex subunit 13-like##AF515599|MED13L|23389|mediator complex subunit 13-like##NM_015335|MED13L|23389|mediator complex subunit 13-like##AK054604|TBX3|6926|T-box 3##NM_005996|TBX3|6926|T-box 3##NM_016569|TBX3|6926|T-box 3##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173##NM_001085481|MAP1LC3B2|643246|microtubule-associated protein 1 light chain 3 beta 2##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49	0.999181	0.0	denovo_WM_7:-5:0.828
chr6	90070467	90070625	reg1004484.p1	7.605	+	TSC_hg19_v1_chr6_-_90062622 NM_016021	-7759	-	TSC_hg19_v1_chr6_-_90062559 AK290574 BC013973	-8031	-	TSC_hg19_v1_chr6_-_90062439 AK223464 AK300629	-8106	-	BC003088 AF272036 AL137502 TSC_hg19_v1_chr6_-_90121800	51194	-	TSC_hg19_v1_chr6_-_90121945 AK289799	51382	-	TSC_hg19_v1_chr6_-_90121986 NM_021244	51578	-	NM_016021|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK290574|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##BC013973|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK223464|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK300629|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##BC003088|RRAGD|58528|Ras-related GTP binding D##AF272036|RRAGD|58528|Ras-related GTP binding D##AL137502|RRAGD|58528|Ras-related GTP binding D##AK289799|RRAGD|58528|Ras-related GTP binding D##NM_021244|RRAGD|58528|Ras-related GTP binding D	0.0	0.0	
chr9	99770113	99770220	reg1003263.p1	7.605	+	NM_001045477 NM_001170741	-78881	+	BC137073 AK131468 NM_001001662	-153780	-	AB023189 NM_014930 TSC_hg19_v1_chr9_-_99540352 BC036676 BC068587 BC058022 AK292600	-229813	-	TSC_hg19_v1_chr9_-_99775872 BC005058	5734	-	AF070448 BC023504 Y14734 AB001928 AK310645 AK310740 BC110512 AY358641 NM_001333	31312	-	AK312806 NM_001201575	31758	-	NM_001045477|FAM22G|441457|family with sequence similarity 22, member G##NM_001170741|FAM22G|441457|family with sequence similarity 22, member G##BC137073|ZNF782|158431|zinc finger protein 782##AK131468|ZNF782|158431|zinc finger protein 782##NM_001001662|ZNF782|158431|zinc finger protein 782##AB023189|ZNF510|22869|zinc finger protein 510##NM_014930|ZNF510|22869|zinc finger protein 510##BC036676|ZNF510|22869|zinc finger protein 510##BC068587|ZNF510|22869|zinc finger protein 510##BC058022|ZNF510|22869|zinc finger protein 510##AK292600|ZNF510|22869|zinc finger protein 510##BC005058|HIATL2|84278|hippocampus abundant transcript-like 2##AF070448|CTSL2|1515|cathepsin L2##BC023504|CTSL2|1515|cathepsin L2##Y14734|CTSL2|1515|cathepsin L2##AB001928|CTSL2|1515|cathepsin L2##AK310645|CTSL2|1515|cathepsin L2##AK310740|CTSL2|1515|cathepsin L2##BC110512|CTSL2|1515|cathepsin L2##AY358641|CTSL2|1515|cathepsin L2##NM_001333|CTSL2|1515|cathepsin L2##AK312806|CTSL2|1515|cathepsin L2##NM_001201575|CTSL2|1515|cathepsin L2	0.993338	0.0	denovo_WM_7:29:0.813
chr5	55966153	55966333	reg1003356.p2	7.604	+	AK123389 NM_024669	-437058	-	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-675480	-	NM_001242636 NM_001242639	-817094	+	NM_005921	144656	+	TSC_hg19_v1_chr5_+_56111375 AK307828	145121	+	TSC_hg19_v1_chr5_+_56111395 AF042838	145175	+	AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AF042838|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.987595	0.0	denovo_WM_7:43:0.451	denovo_WM_7:44:0.451
chr6_cox_hap2	4099102	4099225	reg1000342.p1	7.604	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.138983	0.0	
chr16	87814449	87814601	reg1004749.p2	7.603	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-14955	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-15010	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-177815	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	88550	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	155622	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	170643	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.998667	0.0	
chr4	124364734	124364849	reg1004249.p1	7.603	+	AK026960 BC063856 NM_005841	-44118	+	TSC_hg19_v1_chr4_+_124317949 AY192146 NM_199327	-46835	+	TSC_hg19_v1_chr4_+_123844255 NM_145207 AF361489 AL832175 AF479656 AK091384 AX746949 BC048217 AM392939 AM393832	-520539	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	1269023	-	NM_024582	1872775	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	4189348	+	AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##AY192146|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_199327|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_145207|SPATA5|166378|spermatogenesis associated 5##AF361489|SPATA5|166378|spermatogenesis associated 5##AL832175|SPATA5|166378|spermatogenesis associated 5##AF479656|SPATA5|166378|spermatogenesis associated 5##AK091384|SPATA5|166378|spermatogenesis associated 5##BC048217|SPATA5|166378|spermatogenesis associated 5##AM392939|SPATA5|166378|spermatogenesis associated 5##AM393832|SPATA5|166378|spermatogenesis associated 5##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)	1.992873	0.0	denovo_WM_7:62:0.567	denovo_WM_7:63:0.286	denovo_WM_7:77:0.327	denovo_WM_7:78:0.607
chr6	107979020	107979183	reg1003713.p1	7.603	+	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	-167673	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	-198371	-	BC131628 NM_001080450	-543466	-	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	166415	-	AF100141 CU690382 CU690568 BC001153 TSC_hg19_v1_chr6_-_108279282 AK074835	300156	-	TSC_hg19_v1_chr6_-_108279316 AJ011779	300211	-	NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AF100141|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC001153|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK074835|SEC63|11231|SEC63 homolog (S. cerevisiae)##AJ011779|SEC63|11231|SEC63 homolog (S. cerevisiae)	0.995774	0.0	denovo_WM_7:-49:0.983
chr17	57920071	57920251	reg1004518.p1	7.602	+	TSC_hg19_v1_chr17_+_57915291 AK310806	-4855	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-135088	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-135126	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	50030	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	50301	+	TSC_hg19_v1_chr17_+_57970492 AK300202 AK312875 BC053365 M60724 AB384946 CU690966 AK297147	50381	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK300202|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK312875|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC053365|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##M60724|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK297147|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	1.039163	0.0	
chr6	152023397	152023553	reg1004697.p2	7.602	+	NM_001122742 U68068 AK309580 AB588629 AB588630	-11782	+	NM_025059 BC060803 BC035003 AK225330 AK026958	-208257	+	AK298490 TSC_hg19_v1_chr6_+_151773653 AK310840 AL110241 BC011348 CU679902	-249833	+	NM_001122741 AK293019 AK313644	103348	+	NM_001122740 U68067	104978	+	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	105391	+	NM_001122742|ESR1|2099|estrogen receptor 1##U68068|ESR1|2099|estrogen receptor 1##AK309580|ESR1|2099|estrogen receptor 1##AB588629|ESR1|2099|estrogen receptor 1##AB588630|ESR1|2099|estrogen receptor 1##NM_025059|C6orf97|80129|chromosome 6 open reading frame 97##BC060803|C6orf97|80129|chromosome 6 open reading frame 97##BC035003|C6orf97|80129|chromosome 6 open reading frame 97##AK225330|C6orf97|80129|chromosome 6 open reading frame 97##AK026958|C6orf97|80129|chromosome 6 open reading frame 97##AK298490|C6orf211|79624|chromosome 6 open reading frame 211##AK310840|C6orf211|79624|chromosome 6 open reading frame 211##AL110241|C6orf211|79624|chromosome 6 open reading frame 211##BC011348|C6orf211|79624|chromosome 6 open reading frame 211##NM_001122741|ESR1|2099|estrogen receptor 1##AK293019|ESR1|2099|estrogen receptor 1##AK313644|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1	0.104467	0.0	
chr5	53545441	53545621	reg1004601.p2	7.601	+	TSC_hg19_v1_chr5_+_52856474 AF020351 AK307973 CU675075	-689045	+	TSC_hg19_v1_chr5_+_52856468 NM_002495 BC005270	-689067	+	TSC_hg19_v1_chr5_+_52776479 AB451330 AB451474 CR541813 DQ893433 DQ896745	-768981	+	TSC_hg19_v1_chr5_-_53606337 CR457225 CU693132	60794	-	TSC_hg19_v1_chr5_-_53606389 AK000058 AK290886 BC026093 NM_019087 AX772814 AK311482	60871	-	AK314215 NM_006308 U15590 Y17782 BC126272 BC132869 HQ258075 CR450314	205993	+	AF020351|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##AK307973|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##NM_002495|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##BC005270|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##AB451330|FST|10468|follistatin##AB451474|FST|10468|follistatin##CR541813|FST|10468|follistatin##DQ893433|FST|10468|follistatin##DQ896745|FST|10468|follistatin##CR457225|ARL15|54622|ADP-ribosylation factor-like 15##AK000058|ARL15|54622|ADP-ribosylation factor-like 15##AK290886|ARL15|54622|ADP-ribosylation factor-like 15##BC026093|ARL15|54622|ADP-ribosylation factor-like 15##NM_019087|ARL15|54622|ADP-ribosylation factor-like 15##AK311482|ARL15|54622|ADP-ribosylation factor-like 15##AK314215|HSPB3|8988|heat shock 27kDa protein 3##NM_006308|HSPB3|8988|heat shock 27kDa protein 3##U15590|HSPB3|8988|heat shock 27kDa protein 3##Y17782|HSPB3|8988|heat shock 27kDa protein 3##BC126272|HSPB3|8988|heat shock 27kDa protein 3##BC132869|HSPB3|8988|heat shock 27kDa protein 3##HQ258075|HSPB3|8988|heat shock 27kDa protein 3##CR450314|HSPB3|8988|heat shock 27kDa protein 3	0.997458	0.0	
chr1	16735367	16735507	reg1003326.p2	7.600	+	NM_001114600 NM_015609 BC023988 TSC_hg19_v1_chr1_+_16693726 BX640985 AJ295987 AB097042 AB097043 AB097046 AK297926 AK298576 AK308787 AL050028 AK316205 BC065538 AB097044 AB097045 BC010631	-41766	+	TSC_hg19_v1_chr1_-_16678969 BC063864 NM_018994 AK055598 BC043410	-56489	-	TSC_hg19_v1_chr1_-_16678922 AK310671	-56519	-	AK128106 BC022039 AK311614 AY327405 NM_198546	28465	-	NM_001145277 NM_001145278 NM_018090 TSC_hg19_v1_chr1_+_16767200	31747	+	AK223344 TSC_hg19_v1_chr1_+_16767218 AK300764 AK302227 AK023545 BC018914	31788	+	NM_001114600|C1orf144|26099|chromosome 1 open reading frame 144##NM_015609|C1orf144|26099|chromosome 1 open reading frame 144##BC023988|C1orf144|26099|chromosome 1 open reading frame 144##BX640985|C1orf144|26099|chromosome 1 open reading frame 144##AJ295987|C1orf144|26099|chromosome 1 open reading frame 144##AB097042|C1orf144|26099|chromosome 1 open reading frame 144##AB097043|C1orf144|26099|chromosome 1 open reading frame 144##AB097046|C1orf144|26099|chromosome 1 open reading frame 144##AK297926|C1orf144|26099|chromosome 1 open reading frame 144##AK298576|C1orf144|26099|chromosome 1 open reading frame 144##AK308787|C1orf144|26099|chromosome 1 open reading frame 144##AL050028|C1orf144|26099|chromosome 1 open reading frame 144##AK316205|C1orf144|26099|chromosome 1 open reading frame 144##BC065538|C1orf144|26099|chromosome 1 open reading frame 144##AB097044|C1orf144|26099|chromosome 1 open reading frame 144##AB097045|C1orf144|26099|chromosome 1 open reading frame 144##BC010631|C1orf144|26099|chromosome 1 open reading frame 144##BC063864|FBXO42|54455|F-box protein 42##NM_018994|FBXO42|54455|F-box protein 42##AK055598|FBXO42|54455|F-box protein 42##BC043410|FBXO42|54455|F-box protein 42##AK310671|FBXO42|54455|F-box protein 42##AK128106|SPATA21|374955|spermatogenesis associated 21##BC022039|SPATA21|374955|spermatogenesis associated 21##AK311614|SPATA21|374955|spermatogenesis associated 21##AY327405|SPATA21|374955|spermatogenesis associated 21##NM_198546|SPATA21|374955|spermatogenesis associated 21##NM_001145277|NECAP2|55707|NECAP endocytosis associated 2##NM_001145278|NECAP2|55707|NECAP endocytosis associated 2##NM_018090|NECAP2|55707|NECAP endocytosis associated 2##AK223344|NECAP2|55707|NECAP endocytosis associated 2##AK300764|NECAP2|55707|NECAP endocytosis associated 2##AK302227|NECAP2|55707|NECAP endocytosis associated 2##AK023545|NECAP2|55707|NECAP endocytosis associated 2##BC018914|NECAP2|55707|NECAP endocytosis associated 2	0.993773	0.0	
chr14	93131594	93131738	reg1004717.p2	7.599	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-12843	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-13030	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-151707	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	83293	-	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	129020	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	257778	+	AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	1.330582	0.0	denovo_WM_7:53:0.264	denovo_WM_7:68:0.330
chr5	72682988	72683141	reg1004503.p1	7.599	+	AK315460 NM_153217 AK055830	-214033	+	TSC_hg19_v1_chr5_+_72416401 NM_001161342 NM_173490 BC018083	-266628	+	TSC_hg19_v1_chr5_+_72251897 AK291782 BC006004 AK295141 BC014311 AL831971 AM393291 AM393840 CU676963	-431163	+	U13222 TSC_hg19_v1_chr5_-_72743884	60795	-	NM_004472 U59832 TSC_hg19_v1_chr5_-_72744463	61345	-	TSC_hg19_v1_chr5_+_72794266 NM_001037637 NM_001207 AK310919 AK225964 AK291125	111195	+	AK315460|TMEM174|134288|transmembrane protein 174##NM_153217|TMEM174|134288|transmembrane protein 174##AK055830|TMEM174|134288|transmembrane protein 174##NM_001161342|TMEM171|134285|transmembrane protein 171##NM_173490|TMEM171|134285|transmembrane protein 171##BC018083|TMEM171|134285|transmembrane protein 171##AK291782|FCHO2|115548|FCH domain only 2##BC006004|FCHO2|115548|FCH domain only 2##AK295141|FCHO2|115548|FCH domain only 2##BC014311|FCHO2|115548|FCH domain only 2##AL831971|FCHO2|115548|FCH domain only 2##AM393291|FCHO2|115548|FCH domain only 2##AM393840|FCHO2|115548|FCH domain only 2##U13222|FOXD1|2297|forkhead box D1##NM_004472|FOXD1|2297|forkhead box D1##U59832|FOXD1|2297|forkhead box D1##NM_001037637|BTF3|689|basic transcription factor 3##NM_001207|BTF3|689|basic transcription factor 3##AK310919|BTF3|689|basic transcription factor 3##AK225964|BTF3|689|basic transcription factor 3##AK291125|BTF3|689|basic transcription factor 3	1.007562	0.843148	CTCF.p2:38:0.843
chr7	2199844	2199959	reg1005053.p1	7.599	+	TSC_hg19_v1_chr7_-_1980177 BC018870	-219738	-	NM_001128636	-451104	+	TSC_hg19_v1_chr7_+_1609777 BX538028 BC036405 BC047649	-590080	+	AK310481 TSC_hg19_v1_chr7_-_2272542	72634	-	TSC_hg19_v1_chr7_-_2272559 AF083811	72659	-	TSC_hg19_v1_chr7_-_2272581 AK090959 AK310831 AK314227 AX746704 NM_001013836 NM_001013837 NM_003550	72679	-	BC018870|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001128636|ELFN1|392617|extracellular leucine-rich repeat and fibronectin type III domain containing 1##BX538028|KIAA1908|114796|uncharacterized LOC114796##BC036405|KIAA1908|114796|uncharacterized LOC114796##BC047649|KIAA1908|114796|uncharacterized LOC114796##AK310481|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AF083811|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK090959|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310831|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK314227|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001013836|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001013837|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_003550|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)	1.994668	0.0	denovo_WM_7:-24:0.494	denovo_WM_7:-25:0.494
chr19	46386754	46386854	reg1003858.p1	7.598	+	BC016024 NM_004497 TSC_hg19_v1_chr19_+_46367583 AK223473 AB464526 BT006720 CU677549 L12141	-19189	+	AF049526 TSC_hg19_v1_chr19_-_46366406 Y10931 AB210010 BC030214 AK300252 BX649165 AK130602 NM_004819	-20360	-	BC057785 AB587490 AM393487 BC146683 BC136351 BC136352 BC144018 AK098837 AK223347 AL136761 NM_030785	-68286	-	AK223622 TSC_hg19_v1_chr19_-_46389398 AK315060 BC038222 NM_015649 AY278022 BC039002	2558	-	TSC_hg19_v1_chr19_-_46405872 BC044311 NM_001012643	19102	-	HQ258065 BC042883 NM_001029861 BC117484 BC117486	31235	-	BC016024|FOXA3|3171|forkhead box A3##NM_004497|FOXA3|3171|forkhead box A3##AK223473|FOXA3|3171|forkhead box A3##BT006720|FOXA3|3171|forkhead box A3##L12141|FOXA3|3171|forkhead box A3##AF049526|SYMPK|8189|symplekin##Y10931|SYMPK|8189|symplekin##AB210010|SYMPK|8189|symplekin##BC030214|SYMPK|8189|symplekin##AK300252|SYMPK|8189|symplekin##BX649165|SYMPK|8189|symplekin##AK130602|SYMPK|8189|symplekin##NM_004819|SYMPK|8189|symplekin##BC057785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AM393487|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC146683|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136351|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC136352|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##BC144018|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK098837|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK223347|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AL136761|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##NM_030785|RSPH6A|81492|radial spoke head 6 homolog A (Chlamydomonas)##AK223622|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AK315060|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC038222|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##NM_015649|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##AY278022|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC039002|IRF2BP1|26145|interferon regulatory factor 2 binding protein 1##BC044311|MYPOP|339344|Myb-related transcription factor, partner of profilin##NM_001012643|MYPOP|339344|Myb-related transcription factor, partner of profilin##HQ258065|NANOS2|339345|nanos homolog 2 (Drosophila)##BC042883|NANOS2|339345|nanos homolog 2 (Drosophila)##NM_001029861|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117484|NANOS2|339345|nanos homolog 2 (Drosophila)##BC117486|NANOS2|339345|nanos homolog 2 (Drosophila)	0.309038	0.985119	CTCF.p2:-28:0.985
chr20	23331109	23331272	reg1004703.p2	7.598	+	AB527124 AM393282 AM393752 DQ891055 DQ894234 TSC_hg19_v1_chr20_-_23066962 AJ295142 AB209895 BC028075 AK299957 NM_012072 U94333	-264257	-	TSC_hg19_v1_chr20_-_23062805 AK056764	-268378	-	AB587391 BC053357 M16552 X05495 BC035602 NM_000361 TSC_hg19_v1_chr20_-_23030305 AK123557	-300952	-	BC003410 NM_013248 TSC_hg19_v1_chr20_+_23331435 AK026360 BC000759 BC003029 AF156957 BC002687	254	+	AK295362 TSC_hg19_v1_chr20_+_23342818 AK056477 AK293942 AK314599	11623	+	TSC_hg19_v1_chr20_+_23342853 AK289814	11669	+	AM393282|CD93|22918|CD93 molecule##AM393752|CD93|22918|CD93 molecule##DQ891055|CD93|22918|CD93 molecule##DQ894234|CD93|22918|CD93 molecule##AJ295142|CD93|22918|CD93 molecule##AB209895|CD93|22918|CD93 molecule##BC028075|CD93|22918|CD93 molecule##AK299957|CD93|22918|CD93 molecule##NM_012072|CD93|22918|CD93 molecule##U94333|CD93|22918|CD93 molecule##AK056764|CD93|22918|CD93 molecule##BC053357|THBD|7056|thrombomodulin##M16552|THBD|7056|thrombomodulin##X05495|THBD|7056|thrombomodulin##BC035602|THBD|7056|thrombomodulin##NM_000361|THBD|7056|thrombomodulin##AK123557|THBD|7056|thrombomodulin##BC003410|NXT1|29107|NTF2-like export factor 1##NM_013248|NXT1|29107|NTF2-like export factor 1##AK026360|NXT1|29107|NTF2-like export factor 1##BC000759|NXT1|29107|NTF2-like export factor 1##BC003029|NXT1|29107|NTF2-like export factor 1##AF156957|NXT1|29107|NTF2-like export factor 1##BC002687|NXT1|29107|NTF2-like export factor 1##AK295362|GZF1|64412|GDNF-inducible zinc finger protein 1##AK056477|GZF1|64412|GDNF-inducible zinc finger protein 1##AK293942|GZF1|64412|GDNF-inducible zinc finger protein 1##AK314599|GZF1|64412|GDNF-inducible zinc finger protein 1##AK289814|GZF1|64412|GDNF-inducible zinc finger protein 1	0.0	0.0	
chr4	108915304	108915440	reg1004355.p1	7.598	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-4299	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-4360	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-4436	+	AK303272 NM_001166119	172542	-	TSC_hg19_v1_chr4_+_109088684 BC020624	173312	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	174427	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	0.948805	0.0	denovo_WM_7:25:0.721
chr5	5141925	5142080	reg1004798.p1	7.598	+	AK127746 DQ266047 NM_139056 TSC_hg19_v1_chr5_+_5140442 AB462933 AJ315734	-1491	+	AY335938 NM_024337	-1545835	+	AY249325 NM_178569 BC101608 BC101634 BC143638 BC143639 BC143640 BC171731	-2389701	+	TSC_hg19_v1_chr5_+_5422777 AK126937	280773	+	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	280907	+	AB591030 AY277599 AY598325 TSC_hg19_v1_chr5_-_6378661 AY453397 BC003353 NM_032286	1236648	-	AK127746|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##DQ266047|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##NM_139056|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AJ315734|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AY335938|IRX1|79192|iroquois homeobox 1##NM_024337|IRX1|79192|iroquois homeobox 1##AY249325|C5orf38|153571|chromosome 5 open reading frame 38##NM_178569|C5orf38|153571|chromosome 5 open reading frame 38##BC101608|C5orf38|153571|chromosome 5 open reading frame 38##BC101634|C5orf38|153571|chromosome 5 open reading frame 38##BC143638|C5orf38|153571|chromosome 5 open reading frame 38##BC143639|C5orf38|153571|chromosome 5 open reading frame 38##BC143640|C5orf38|153571|chromosome 5 open reading frame 38##BC171731|C5orf38|153571|chromosome 5 open reading frame 38##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947##AY277599|MED10|84246|mediator complex subunit 10##AY598325|MED10|84246|mediator complex subunit 10##AY453397|MED10|84246|mediator complex subunit 10##BC003353|MED10|84246|mediator complex subunit 10##NM_032286|MED10|84246|mediator complex subunit 10	0.0	1.008022	CTCF.p2:-29:0.996
chr2	175470537	175470683	reg1006137.p1	7.597	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	-8129	-	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-118813	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-210052	+	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	28687	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	77144	-	TSC_hg19_v1_chr2_+_175584527 DQ895855	113968	+	BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1##DQ895855|H3F3A|3020|H3 histone, family 3A	0.010735	0.0	
chr12	14556937	14557108	reg1001943.p2	7.595	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	-18750	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	-38387	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-424036	-	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	163587	-	NM_024829 TSC_hg19_v1_chr12_-_14720806	163782	-	BC136544 BC136545 M73489 TSC_hg19_v1_chr12_-_14849534 S57551 AK310034 NM_004963	292463	-	AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1##NM_024829|PLBD1|79887|phospholipase B domain containing 1##BC136544|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##BC136545|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##M73489|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##S57551|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##AK310034|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##NM_004963|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)	1.342954	0.0	denovo_WM_7:50:0.715	denovo_WM_7:51:0.277	denovo_WM_7:-64:0.224
chr14	73938834	73939014	reg1004473.p1	7.594	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-13633	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-13657	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-13692	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	18701	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	18739	+	TSC_hg19_v1_chr14_+_73957674 AY390535	18749	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.98904	0.45088	denovo_WM_7:-66:0.978	CTCF.p2:69:0.451
chr17	4465558	4465704	reg1004613.p2	7.594	+	CU687648 BC063111 AK129501 AK300648 AK296645 TSC_hg19_v1_chr17_-_4463871 AK074646 NM_001122890 NM_153338	-1780	-	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	-6957	-	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	-63395	+	NM_198501 AK124452 BC105050 BC112177	21693	+	BC110859 NM_001114974	22202	+	AB590843 M23892 BC029032 NM_001140 AK290309 AK296792 AK296904 AK312557	79327	-	BC063111|GGT6|124975|gamma-glutamyltransferase 6##AK129501|GGT6|124975|gamma-glutamyltransferase 6##AK300648|GGT6|124975|gamma-glutamyltransferase 6##AK296645|GGT6|124975|gamma-glutamyltransferase 6##AK074646|GGT6|124975|gamma-glutamyltransferase 6##NM_001122890|GGT6|124975|gamma-glutamyltransferase 6##NM_153338|GGT6|124975|gamma-glutamyltransferase 6##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##NM_198501|SMTNL2|342527|smoothelin-like 2##AK124452|SMTNL2|342527|smoothelin-like 2##BC105050|SMTNL2|342527|smoothelin-like 2##BC112177|SMTNL2|342527|smoothelin-like 2##BC110859|SMTNL2|342527|smoothelin-like 2##NM_001114974|SMTNL2|342527|smoothelin-like 2##M23892|ALOX15|246|arachidonate 15-lipoxygenase##BC029032|ALOX15|246|arachidonate 15-lipoxygenase##NM_001140|ALOX15|246|arachidonate 15-lipoxygenase##AK290309|ALOX15|246|arachidonate 15-lipoxygenase##AK296792|ALOX15|246|arachidonate 15-lipoxygenase##AK296904|ALOX15|246|arachidonate 15-lipoxygenase##AK312557|ALOX15|246|arachidonate 15-lipoxygenase	0.990885	0.0	denovo_WM_7:12:0.945
chr4	166018077	166018154	reg1003641.p1	7.593	+	AK093201 AX747987 NM_152620	-64965	+	BC089393 NM_001012414	-119298	-	TSC_hg19_v1_chr4_+_165878133 BC022381 CU692592	-139964	+	CU690322 BC036301 BX648915 BX538029 TSC_hg19_v1_chr4_-_166033990	15846	-	TSC_hg19_v1_chr4_-_166034013 NM_001100389	15910	-	NM_007246 TSC_hg19_v1_chr4_+_166128778 BC022503	110668	+	AK093201|TRIM60|166655|tripartite motif containing 60##NM_152620|TRIM60|166655|tripartite motif containing 60##BC089393|TRIM61|391712|tripartite motif containing 61##NM_001012414|TRIM61|391712|tripartite motif containing 61##BC022381|C4orf39|152756|chromosome 4 open reading frame 39##BC036301|TMEM192|201931|transmembrane protein 192##BX648915|TMEM192|201931|transmembrane protein 192##BX538029|TMEM192|201931|transmembrane protein 192##NM_001100389|TMEM192|201931|transmembrane protein 192##NM_007246|KLHL2|11275|kelch-like 2, Mayven (Drosophila)##BC022503|KLHL2|11275|kelch-like 2, Mayven (Drosophila)	0.993108	0.541656	denovo_WM_7:0:0.677	CTCF.p2:30:0.542
chr19	56015131	56015257	reg1004368.p2	7.590	+	TSC_hg19_v1_chr19_+_55999923 EU699476 EU699477	-15267	+	TSC_hg19_v1_chr19_+_55999863 AK092577 AX747607 NM_001144950 NM_001195267	-15330	+	TSC_hg19_v1_chr19_+_55996577 NM_020378 AF086533 BC019079 AB038651	-18622	+	NM_001101401	33240	-	NM_001199824	41714	-	TSC_hg19_v1_chr19_-_56092206 AK092772 AX747719 NM_152600	77020	-	EU699476|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##EU699477|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##AK092577|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_001144950|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_001195267|SSC5D|284297|scavenger receptor cysteine rich domain containing (5 domains)##NM_020378|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AF086533|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##BC019079|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##AB038651|NAT14|57106|N-acetyltransferase 14 (GCN5-related, putative)##NM_001101401|SBK2|646643|SH3-binding domain kinase family, member 2##NM_001199824|SGK110|100130827|putative uncharacterized serine/threonine-protein kinase SgK110-like##AK092772|ZNF579|163033|zinc finger protein 579##NM_152600|ZNF579|163033|zinc finger protein 579	0.074173	0.0	
chr15	68204177	68204350	reg1003927.p1	7.587	+	NM_001031807	-86323	+	AK293459 NM_001206804	-362922	+	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	-369241	+	AF167160 NM_016166 BC118587 BC121797 TSC_hg19_v1_chr15_+_68346652 AK314515 BC104646	142349	+	TSC_hg19_v1_chr15_+_68346659 BC053685 AB590990 AF077951 EF487997 EF487998 FJ997900 AY826819	142398	+	TSC_hg19_v1_chr15_-_68497633 BX640702 BC009516 AK092628 AK296804 AX747637	293374	-	NM_001031807|SKOR1|390598|SKI family transcriptional corepressor 1##AK293459|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001206804|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5##AF167160|PIAS1|8554|protein inhibitor of activated STAT, 1##NM_016166|PIAS1|8554|protein inhibitor of activated STAT, 1##BC118587|PIAS1|8554|protein inhibitor of activated STAT, 1##BC121797|PIAS1|8554|protein inhibitor of activated STAT, 1##AK314515|PIAS1|8554|protein inhibitor of activated STAT, 1##BC104646|PIAS1|8554|protein inhibitor of activated STAT, 1##BC053685|PIAS1|8554|protein inhibitor of activated STAT, 1##AF077951|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487997|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487998|PIAS1|8554|protein inhibitor of activated STAT, 1##FJ997900|PIAS1|8554|protein inhibitor of activated STAT, 1##AY826819|PIAS1|8554|protein inhibitor of activated STAT, 1##BX640702|CALML4|91860|calmodulin-like 4##BC009516|CALML4|91860|calmodulin-like 4##AK092628|CALML4|91860|calmodulin-like 4##AK296804|CALML4|91860|calmodulin-like 4	0.988159	0.0	denovo_WM_7:-28:0.324	denovo_WM_7:-29:0.571
chr8	103137823	103137960	reg1004084.p2	7.585	+	NM_001040630	-757	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	-1368	-	NM_032041	-334453	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	113282	-	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	287020	-	NM_024410 AK315276 BC104456 BC104457	425970	+	NM_001040630|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_032041|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1	1.912483	0.0	denovo_WM_7:-42:0.881	denovo_WM_7:-96:0.642
chr7	2445694	2445854	reg1001314.p2	7.584	+	TSC_hg19_v1_chr7_+_2443245 BC095492 BC002918 BC015954 AK223191 AK223211 AK313484 AF239822 AY358574	-2531	+	TSC_hg19_v1_chr7_+_2443191 NM_001243794 NM_001243795 NM_018641	-2594	+	TSC_hg19_v1_chr7_+_2394547 BC110865	-51227	+	AK096284 NM_001166355	106388	+	BC014851 NM_002304	111722	+	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	113663	+	BC095492|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC002918|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC015954|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223191|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223211|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK313484|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AF239822|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AY358574|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243794|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243795|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_018641|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC110865|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK096284|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001166355|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC014851|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_002304|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	0.0	0.0	
chr4	147919452	147919584	reg1004642.p1	7.583	+	AK301807 BC024193 AK093145 AX747953 AK225725 AF345910 AK314066 NM_031956	-52520	-	TSC_hg19_v1_chr4_+_147560044 AK314982 NM_004575 U06233 BC136344 BC136345	-359427	+	AM392861 BC146684 CU687734 DQ122860 DQ122861 DQ871036 EU831657 EU831663 EU831740 EU831744 CR936751 BC120970 BC120971 BC127626 BC127627 BC148252 AK291046 BC063471 AL136728 TSC_hg19_v1_chr4_-_147443093 BC023288 AY346324 BC150308 CR933647 NM_001029998 NM_032128	-476522	-	NM_001166055 NM_001957 AK315931 TSC_hg19_v1_chr4_+_148402083	482557	+	TSC_hg19_v1_chr4_+_148402117 D90348 S57498 X61950	482605	+	TSC_hg19_v1_chr4_+_148402244 AK312812 BC022511 AK304451 S45956	482792	+	AK301807|TTC29|83894|tetratricopeptide repeat domain 29##BC024193|TTC29|83894|tetratricopeptide repeat domain 29##AK093145|TTC29|83894|tetratricopeptide repeat domain 29##AK225725|TTC29|83894|tetratricopeptide repeat domain 29##AF345910|TTC29|83894|tetratricopeptide repeat domain 29##AK314066|TTC29|83894|tetratricopeptide repeat domain 29##NM_031956|TTC29|83894|tetratricopeptide repeat domain 29##AK314982|POU4F2|5458|POU class 4 homeobox 2##NM_004575|POU4F2|5458|POU class 4 homeobox 2##U06233|POU4F2|5458|POU class 4 homeobox 2##BC136344|POU4F2|5458|POU class 4 homeobox 2##BC136345|POU4F2|5458|POU class 4 homeobox 2##AM392861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC146684|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122860|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ871036|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831657|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831663|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831740|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831744|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR936751|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120970|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120971|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127626|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127627|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC148252|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK291046|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC063471|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AL136728|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC023288|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AY346324|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC150308|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR933647|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_001029998|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_032128|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_001166055|EDNRA|1909|endothelin receptor type A##NM_001957|EDNRA|1909|endothelin receptor type A##AK315931|EDNRA|1909|endothelin receptor type A##D90348|EDNRA|1909|endothelin receptor type A##S57498|EDNRA|1909|endothelin receptor type A##X61950|EDNRA|1909|endothelin receptor type A##AK312812|EDNRA|1909|endothelin receptor type A##BC022511|EDNRA|1909|endothelin receptor type A##AK304451|EDNRA|1909|endothelin receptor type A##S45956|EDNRA|1909|endothelin receptor type A	1.4652	0.0	denovo_WM_7:14:0.324	denovo_WM_7:29:0.326
chr7	81810323	81810464	reg1003082.p1	7.583	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-411019	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1261719	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1261959	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	262453	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	262687	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	981476	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	1.992068	0.0	denovo_WM_7:-7:0.249	denovo_WM_7:-8:0.214	denovo_WM_7:-27:0.213	denovo_WM_7:-28:0.248
chr10	124058421	124058531	reg1004402.p1	7.582	+	AK058088 NM_144587 BC109261 BC109262	-27647	+	NM_006997 NM_206860 TSC_hg19_v1_chr10_+_123923144 BC141837 BC142673 AF095791	-135245	+	BC039311 TSC_hg19_v1_chr10_+_123923007	-135501	+	NM_001001974 TSC_hg19_v1_chr10_+_124134144	75643	+	AK314660 TSC_hg19_v1_chr10_+_124134274 BC001136	75769	+	AK057463 NM_001195608	87108	+	AK058088|BTBD16|118663|BTB (POZ) domain containing 16##NM_144587|BTBD16|118663|BTB (POZ) domain containing 16##BC109261|BTBD16|118663|BTB (POZ) domain containing 16##BC109262|BTBD16|118663|BTB (POZ) domain containing 16##NM_006997|TACC2|10579|transforming, acidic coiled-coil containing protein 2##NM_206860|TACC2|10579|transforming, acidic coiled-coil containing protein 2##BC141837|TACC2|10579|transforming, acidic coiled-coil containing protein 2##BC142673|TACC2|10579|transforming, acidic coiled-coil containing protein 2##AF095791|TACC2|10579|transforming, acidic coiled-coil containing protein 2##BC039311|TACC2|10579|transforming, acidic coiled-coil containing protein 2##NM_001001974|PLEKHA1|59338|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1##AK314660|PLEKHA1|59338|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1##BC001136|PLEKHA1|59338|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1##AK057463|PLEKHA1|59338|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1##NM_001195608|PLEKHA1|59338|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	0.0	0.970342	CTCF.p2:-11:0.970
chr14	20811129	20811309	reg1004493.p2	7.582	+	TSC_hg19_v1_chr14_-_20801439 AK026233 AK225451 AK309183 AK225253 AK226037 AL161994 NM_021178 NM_182849	-9775	-	BC000369 BC001218 BC004435 NM_182852 BX161423 NM_182851 BX161424	-13684	-	TSC_hg19_v1_chr14_-_20774154 AK074553 NM_138376	-37078	-	TSC_hg19_v1_chr14_+_20811783 NM_001042618 NM_005484	528	+	TSC_hg19_v1_chr14_+_20811793 AK290079 AK300971 AK001980 AJ236912	577	+	BC143812 BC126107 BC143815 NM_007110 U86136 TSC_hg19_v1_chr14_-_20881589	70364	-	AK026233|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225451|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK309183|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225253|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK226037|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AL161994|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_021178|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182849|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC000369|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC001218|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC004435|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182852|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BX161423|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182851|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BX161424|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK074553|TTC5|91875|tetratricopeptide repeat domain 5##NM_138376|TTC5|91875|tetratricopeptide repeat domain 5##NM_001042618|PARP2|10038|poly (ADP-ribose) polymerase 2##NM_005484|PARP2|10038|poly (ADP-ribose) polymerase 2##AK290079|PARP2|10038|poly (ADP-ribose) polymerase 2##AK300971|PARP2|10038|poly (ADP-ribose) polymerase 2##AK001980|PARP2|10038|poly (ADP-ribose) polymerase 2##AJ236912|PARP2|10038|poly (ADP-ribose) polymerase 2##BC143812|TEP1|7011|telomerase-associated protein 1##BC126107|TEP1|7011|telomerase-associated protein 1##BC143815|TEP1|7011|telomerase-associated protein 1##NM_007110|TEP1|7011|telomerase-associated protein 1##U86136|TEP1|7011|telomerase-associated protein 1	1.001745	0.0	
chr3	37138660	37138804	reg1003392.p1	7.582	+	BX648844 NM_001167617 NM_001167618 NM_001167619 AK295359 AK298583 AK316074 AK298324 AK311365 AK302807	-103430	+	TSC_hg19_v1_chr3_+_37035008 BC006850 U07418 DQ648888 U07343 AK316264 AK312609 AK222810 AB527828 EU176254 EU176562 AY517558 AK311326 AB209848	-103709	+	NM_000249 TSC_hg19_v1_chr3_+_37034977	-103823	+	TSC_hg19_v1_chr3_-_37217813 BC017703 BC053668 AK291514 NM_001134369 NM_006309 NM_017724	79055	-	TSC_hg19_v1_chr3_+_37284761 BC045543 NM_001172713 NM_002078 BC050444 AK290550 BC023648 AK300192 AK307429 AB209693 U41740 X82834	146031	+	NM_178339 NM_178342 AJ493604 AJ493603	302282	+	BX648844|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167617|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167618|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167619|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK295359|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298583|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316074|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298324|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311365|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK302807|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BC006850|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##U07418|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##DQ648888|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##U07343|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316264|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK312609|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK222810|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##EU176254|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##EU176562|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AY517558|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311326|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AB209848|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_000249|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##BC053668|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##AK291514|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_001134369|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_006309|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_017724|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##BC045543|GOLGA4|2803|golgin A4##NM_001172713|GOLGA4|2803|golgin A4##NM_002078|GOLGA4|2803|golgin A4##BC050444|GOLGA4|2803|golgin A4##AK290550|GOLGA4|2803|golgin A4##BC023648|GOLGA4|2803|golgin A4##AK300192|GOLGA4|2803|golgin A4##AK307429|GOLGA4|2803|golgin A4##AB209693|GOLGA4|2803|golgin A4##U41740|GOLGA4|2803|golgin A4##X82834|GOLGA4|2803|golgin A4##NM_178339|C3orf35|339883|chromosome 3 open reading frame 35##NM_178342|C3orf35|339883|chromosome 3 open reading frame 35##AJ493604|C3orf35|339883|chromosome 3 open reading frame 35##AJ493603|C3orf35|339883|chromosome 3 open reading frame 35	1.014217	0.0	denovo_WM_7:-35:0.494	denovo_WM_7:-36:0.494
chr3	56741634	56741747	reg1004883.p1	7.582	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-24483	-	BC029354 NM_015224	-43617	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-150444	+	AK293864 AB209661 NM_001128616	67979	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	94221	-	AY221117 NM_181727 BC126274 BC136498	352813	+	BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12	1.068379	0.0	denovo_WM_7:5:0.233	denovo_WM_7:6:0.233	denovo_WM_7:7:0.233	denovo_WM_7:8:0.233
chr10	26736315	26736433	reg1004452.p1	7.581	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-8668	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-8706	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-9057	+	AK096048 TSC_hg19_v1_chr10_-_26986612	250210	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	250272	+	TSC_hg19_v1_chr10_-_27057776 AK315914	321443	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	0.99464	0.0	
chr16	14724182	14724362	reg1004615.p1	7.581	+	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	-139	-	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	-244	-	BC047761 TSC_hg19_v1_chr16_+_14294209	-430074	+	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	2467	+	TSC_hg19_v1_chr16_+_14726837 BC003054 AK291114 AK297067	2571	+	BC106731 BC106732 BC111804 NM_003561 U95301	64205	-	AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##BC047761|MKL2|57496|MKL/myocardin-like 2##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator##BC003054|BFAR|51283|bifunctional apoptosis regulator##AK291114|BFAR|51283|bifunctional apoptosis regulator##AK297067|BFAR|51283|bifunctional apoptosis regulator##BC106731|PLA2G10|8399|phospholipase A2, group X##BC106732|PLA2G10|8399|phospholipase A2, group X##BC111804|PLA2G10|8399|phospholipase A2, group X##NM_003561|PLA2G10|8399|phospholipase A2, group X##U95301|PLA2G10|8399|phospholipase A2, group X	0.0	0.0	
chr7	19531584	19531685	reg1003203.p1	7.581	+	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-346621	-	TSC_hg19_v1_chr7_-_19157262 BC036704 NM_000474	-374356	-	TSC_hg19_v1_chr7_+_18548965 AK304343	-982665	+	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	217012	-	BX648384 NM_152774	280769	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	725346	-	BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC036704|TWIST1|7291|twist homolog 1 (Drosophila)##NM_000474|TWIST1|7291|twist homolog 1 (Drosophila)##AK304343|HDAC9|9734|histone deacetylase 9##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1	0.994146	0.0	denovo_WM_7:-39:0.244	denovo_WM_7:-40:0.244	denovo_WM_7:-41:0.244	denovo_WM_7:-42:0.244
chr8	47037362	47037481	reg1004373.p2	7.581	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-3889816	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-4041774	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-4041788	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	1136074	+	TSC_hg19_v1_chr8_+_48173521 AK303579	1136098	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	1136111	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.997394	0.0	denovo_WM_7:-18:0.841
chr14	23772129	23772256	reg1003839.p1	7.580	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-16867	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	-16923	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-119320	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	3852	+	NM_004643	17204	+	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	18482	+	NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1	0.0	0.046833	
chr15	96955418	96955547	reg1003036.p1	7.580	+	NM_001145157	-78914	+	AK316086 NM_001145156	-79689	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	-81505	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	371190	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1548437	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	1548469	+	NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4	2.980845	0.0	denovo_WM_7:67:0.841	denovo_WM_7:-87:0.704
chr2	3656799	3656979	reg1002904.p1	7.580	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-14320	+	X74803 TSC_hg19_v1_chr2_+_3627765	-29144	+	TSC_hg19_v1_chr2_+_3623128 BC071919 AB464168 DQ892985 DQ896234 M77233 AF085824	-33724	+	AK302299 NM_018436 BC029652	48908	+	U23752 AB028641 NM_003108 BC025789 AB464713	2175926	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	3349011	-	AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##X74803|RPS7|6201|ribosomal protein S7##BC071919|RPS7|6201|ribosomal protein S7##DQ892985|RPS7|6201|ribosomal protein S7##DQ896234|RPS7|6201|ribosomal protein S7##M77233|RPS7|6201|ribosomal protein S7##AF085824|RPS7|6201|ribosomal protein S7##AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	1.989913	0.0	denovo_WM_7:61:0.320	denovo_WM_7:62:0.258	denovo_WM_7:79:0.249	denovo_WM_7:80:0.311
chr2	54194748	54194928	reg1004890.p1	7.580	+	AF072693 BC110915 TSC_hg19_v1_chr2_-_54087105 AK314885 NM_001164165 NM_006794	-107720	-	NM_001127397 NM_001127398 NM_015701 TSC_hg19_v1_chr2_+_54014180 AY358717 AK001913 AY453410 BC013129 BC022228 AK315477 DQ894762	-180631	+	AK056069 NM_001201965 BC009569 AB209795 TSC_hg19_v1_chr2_-_54014091 AK000985 AK303133 AK001283 NM_016115 NM_145863	-180760	-	D38521 TSC_hg19_v1_chr2_-_54197945 AY894756 AY894754 AY894755 NM_014614	3043	-	TSC_hg19_v1_chr2_-_54198154 AB621805	3294	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	147756	+	AF072693|GPR75|10936|G protein-coupled receptor 75##BC110915|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##AK314885|GPR75|10936|G protein-coupled receptor 75##NM_001164165|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##NM_006794|GPR75|10936|G protein-coupled receptor 75##NM_001127397|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_001127398|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_015701|ERLEC1|27248|endoplasmic reticulum lectin 1##AY358717|ERLEC1|27248|endoplasmic reticulum lectin 1##AK001913|ERLEC1|27248|endoplasmic reticulum lectin 1##AY453410|ERLEC1|27248|endoplasmic reticulum lectin 1##BC013129|ERLEC1|27248|endoplasmic reticulum lectin 1##BC022228|ERLEC1|27248|endoplasmic reticulum lectin 1##AK315477|ERLEC1|27248|endoplasmic reticulum lectin 1##DQ894762|ERLEC1|27248|endoplasmic reticulum lectin 1##AK056069|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_001201965|ASB3|51130|ankyrin repeat and SOCS box containing 3##BC009569|ASB3|51130|ankyrin repeat and SOCS box containing 3##AB209795|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK000985|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK303133|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK001283|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_016115|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_145863|ASB3|51130|ankyrin repeat and SOCS box containing 3##D38521|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894756|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894754|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894755|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_014614|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type	1.990243	0.0	denovo_WM_7:-27:0.269	denovo_WM_7:-28:0.726	denovo_WM_7:-43:0.859
chr18	3448804	3448984	reg1002934.p2	7.578	+	NM_173207 AK291112	-1277	+	NM_174886	-36823	+	NM_001144944 NM_001144945	-186231	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	1186	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	2737	+	NM_173211	4877	+	NM_173207|TGIF1|7050|TGFB-induced factor homeobox 1##AK291112|TGIF1|7050|TGFB-induced factor homeobox 1##NM_174886|TGIF1|7050|TGFB-induced factor homeobox 1##NM_001144944|MYL12B|103910|myosin, light chain 12B, regulatory##NM_001144945|MYL12B|103910|myosin, light chain 12B, regulatory##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1	0.015039	0.0	
chr16	30539261	30539426	reg1004019.p2	7.577	+	TSC_hg19_v1_chr16_-_30538096 AK295274	-1261	-	TSC_hg19_v1_chr16_-_30537922 BC013760 NM_024671	-1452	-	AK027089 AK315449 TSC_hg19_v1_chr16_-_30537813 BC092403	-1593	-	TSC_hg19_v1_chr16_-_30546003 AK292192	6657	-	TSC_hg19_v1_chr16_-_30546234 AB209546 AK299308 AK054567 BC001361 NM_023931 AK316254	6847	-	EU446557 BC008821 AK093992 AX748400 NM_001172679 NM_033410 TSC_hg19_v1_chr16_-_30569709	30265	-	AK295274|ZNF768|79724|zinc finger protein 768##BC013760|ZNF768|79724|zinc finger protein 768##NM_024671|ZNF768|79724|zinc finger protein 768##AK027089|ZNF768|79724|zinc finger protein 768##AK315449|ZNF768|79724|zinc finger protein 768##BC092403|ZNF768|79724|zinc finger protein 768##AK292192|ZNF747|65988|zinc finger protein 747##AB209546|ZNF747|65988|zinc finger protein 747##AK054567|ZNF747|65988|zinc finger protein 747##BC001361|ZNF747|65988|zinc finger protein 747##NM_023931|ZNF747|65988|zinc finger protein 747##EU446557|ZNF764|92595|zinc finger protein 764##BC008821|ZNF764|92595|zinc finger protein 764##AK093992|ZNF764|92595|zinc finger protein 764##NM_001172679|ZNF764|92595|zinc finger protein 764##NM_033410|ZNF764|92595|zinc finger protein 764	0.59769	0.0	denovo_WM_7:8:0.598
chr7	104965881	104966038	reg1003465.p1	7.576	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-56476	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-213581	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-284545	+	TSC_hg19_v1_chr7_-_105029265 AB489157	63306	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	63383	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	196702	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	1.993133	0.0	denovo_WM_7:-14:0.248	denovo_WM_7:-15:0.248	denovo_WM_7:-16:0.248	denovo_WM_7:-17:0.248
chr5	66499832	66500012	reg1003595.p1	7.575	+	BC109069 BC109070 D83597 NM_005582 AK313177	-7322	-	AY830839 BC018692 NM_015183	-375319	+	TSC_hg19_v1_chr5_+_65892187 NM_001164664 NM_198828 BC033215	-607714	+	TSC_hg19_v1_chr5_+_67511583 NM_181523	1011658	+	TSC_hg19_v1_chr5_+_67511602 BC094795	1011685	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	1084372	+	BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##AY830839|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC018692|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_015183|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_001164664|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_198828|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC033215|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	1.991122	0.0	denovo_WM_7:-6:0.916	denovo_WM_7:8:0.947
chr19	7872641	7872821	reg1004744.p2	7.574	+	NM_001144904 NM_001144905 NM_001144906 NM_001144907 NM_001144908 NM_001144909 NM_001144910 NM_001144911 NM_014257 AK292278 BC038851 AF290887 AK304499 AK314704 AB015629 AF245219 AK298084 AK023750 BC110614 AY343913 DQ893779 AY042234 AY042235 AY042236 AY042237 AY042238 AY042239 AY042240	-44638	+	AY042221 AY042222 AY042223 AY042224 AY042225 AY042226 AY042227 AY042228 AY042229 AY042230 AY042231 AY042232 AY042233 AB527563 BC110615 AF290886 AK293089 TSC_hg19_v1_chr19_-_7812421 M98457 AK304190 AK313585 NM_001144893 NM_001144894 NM_001144895 NM_001144896 NM_001144897 NM_001144899 NM_021155	-60302	-	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	-75715	-	TSC_hg19_v1_chr19_+_7895113 NM_145245 BC014111	22445	+	NM_001159944 AB449874	38675	+	AL442075 TSC_hg19_v1_chr19_-_7934829	62086	-	NM_001144904|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144905|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144906|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144907|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144908|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144909|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144910|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144911|CLEC4M|10332|C-type lectin domain family 4, member M##NM_014257|CLEC4M|10332|C-type lectin domain family 4, member M##AK292278|CLEC4M|10332|C-type lectin domain family 4, member M##BC038851|CLEC4M|10332|C-type lectin domain family 4, member M##AF290887|CLEC4M|10332|C-type lectin domain family 4, member M##AK304499|CLEC4M|10332|C-type lectin domain family 4, member M##AK314704|CLEC4M|10332|C-type lectin domain family 4, member M##AB015629|CLEC4M|10332|C-type lectin domain family 4, member M##AF245219|CLEC4M|10332|C-type lectin domain family 4, member M##AK298084|CLEC4M|10332|C-type lectin domain family 4, member M##AK023750|CLEC4M|10332|C-type lectin domain family 4, member M##BC110614|CLEC4M|10332|C-type lectin domain family 4, member M##AY343913|CLEC4M|10332|C-type lectin domain family 4, member M##DQ893779|CLEC4M|10332|C-type lectin domain family 4, member M##AY042234|CLEC4M|10332|C-type lectin domain family 4, member M##AY042235|CLEC4M|10332|C-type lectin domain family 4, member M##AY042236|CLEC4M|10332|C-type lectin domain family 4, member M##AY042237|CLEC4M|10332|C-type lectin domain family 4, member M##AY042238|CLEC4M|10332|C-type lectin domain family 4, member M##AY042239|CLEC4M|10332|C-type lectin domain family 4, member M##AY042240|CLEC4M|10332|C-type lectin domain family 4, member M##AY042221|CD209|30835|CD209 molecule##AY042222|CD209|30835|CD209 molecule##AY042223|CD209|30835|CD209 molecule##AY042224|CD209|30835|CD209 molecule##AY042225|CD209|30835|CD209 molecule##AY042226|CD209|30835|CD209 molecule##AY042227|CD209|30835|CD209 molecule##AY042228|CD209|30835|CD209 molecule##AY042229|CD209|30835|CD209 molecule##AY042230|CD209|30835|CD209 molecule##AY042231|CD209|30835|CD209 molecule##AY042232|CD209|30835|CD209 molecule##AY042233|CD209|30835|CD209 molecule##BC110615|CD209|30835|CD209 molecule##AF290886|CD209|30835|CD209 molecule##AK293089|CD209|30835|CD209 molecule##M98457|CD209|30835|CD209 molecule##AK304190|CD209|30835|CD209 molecule##AK313585|CD209|30835|CD209 molecule##NM_001144893|CD209|30835|CD209 molecule##NM_001144894|CD209|30835|CD209 molecule##NM_001144895|CD209|30835|CD209 molecule##NM_001144896|CD209|30835|CD209 molecule##NM_001144897|CD209|30835|CD209 molecule##NM_001144899|CD209|30835|CD209 molecule##NM_021155|CD209|30835|CD209 molecule##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G##NM_145245|EVI5L|115704|ecotropic viral integration site 5-like##BC014111|EVI5L|115704|ecotropic viral integration site 5-like##NM_001159944|EVI5L|115704|ecotropic viral integration site 5-like##AB449874|EVI5L|115704|ecotropic viral integration site 5-like##AL442075|FLJ22184|80164|putative uncharacterized protein FLJ22184	1.353347	0.0	denovo_WM_7:79:0.236	denovo_WM_7:98:0.259
chr12	65517346	65517476	reg1006252.p1	7.573	+	TSC_hg19_v1_chr12_-_65515349 NM_007191	-2061	-	AK301818 TSC_hg19_v1_chr12_-_65515286	-2130	-	TSC_hg19_v1_chr12_-_65515107 AF122922 BC018037 AY358344	-2326	-	TSC_hg19_v1_chr12_+_65563362 AK312473 NM_001167614 NM_014319 AK304317 AF112299	45943	+	NM_001031679 NM_001193460 NM_198080 TSC_hg19_v1_chr12_+_65672483 AK316365 AK293084 AK299065 AY358229 BX648776 AL833622 BC040053	155114	+	TSC_hg19_v1_chr12_+_65672705 NM_001193461	155313	+	NM_007191|WIF1|11197|WNT inhibitory factor 1##AK301818|WIF1|11197|WNT inhibitory factor 1##AF122922|WIF1|11197|WNT inhibitory factor 1##BC018037|WIF1|11197|WNT inhibitory factor 1##AY358344|WIF1|11197|WNT inhibitory factor 1##AK312473|LEMD3|23592|LEM domain containing 3##NM_001167614|LEMD3|23592|LEM domain containing 3##NM_014319|LEMD3|23592|LEM domain containing 3##AK304317|LEMD3|23592|LEM domain containing 3##AF112299|LEMD3|23592|LEM domain containing 3##NM_001031679|MSRB3|253827|methionine sulfoxide reductase B3##NM_001193460|MSRB3|253827|methionine sulfoxide reductase B3##NM_198080|MSRB3|253827|methionine sulfoxide reductase B3##AK316365|MSRB3|253827|methionine sulfoxide reductase B3##AK293084|MSRB3|253827|methionine sulfoxide reductase B3##AK299065|MSRB3|253827|methionine sulfoxide reductase B3##AY358229|MSRB3|253827|methionine sulfoxide reductase B3##BX648776|MSRB3|253827|methionine sulfoxide reductase B3##AL833622|MSRB3|253827|methionine sulfoxide reductase B3##BC040053|MSRB3|253827|methionine sulfoxide reductase B3##NM_001193461|MSRB3|253827|methionine sulfoxide reductase B3	0.0	0.09658	
chr5	126128966	126129113	reg1001020.p3	7.572	+	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-15915	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-16157	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	-16208	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	237136	-	NM_178450	237400	-	AK126569 NM_001164478 NM_001164479	280138	-	DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63	0.98872	0.0	denovo_WM_7:-16:0.965
chr5	178971591	178971771	reg1002004.p1	7.572	+	AK308213 NM_014244 NM_021599 TSC_hg19_v1_chr5_-_178772442	-199239	-	AJ003125 AB587330 TSC_hg19_v1_chr5_-_178772362	-199325	-	TSC_hg19_v1_chr5_+_178487382 BC063312 AF525463 NM_014594	-484212	+	TSC_hg19_v1_chr5_+_178977611 AF312367 NM_025158 AF361055	5937	+	TSC_hg19_v1_chr5_+_178977843 AB209507	6161	+	AK291926 NM_001040451 NM_001040452 BC032571 AK075021 TSC_hg19_v1_chr5_+_178986802	15068	+	AK308213|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##NM_014244|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##NM_021599|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##AJ003125|ADAMTS2|9509|ADAM metallopeptidase with thrombospondin type 1 motif, 2##BC063312|ZNF354C|30832|zinc finger protein 354C##AF525463|ZNF354C|30832|zinc finger protein 354C##NM_014594|ZNF354C|30832|zinc finger protein 354C##AF312367|RUFY1|80230|RUN and FYVE domain containing 1##NM_025158|RUFY1|80230|RUN and FYVE domain containing 1##AF361055|RUFY1|80230|RUN and FYVE domain containing 1##AB209507|RUFY1|80230|RUN and FYVE domain containing 1##AK291926|RUFY1|80230|RUN and FYVE domain containing 1##NM_001040451|RUFY1|80230|RUN and FYVE domain containing 1##NM_001040452|RUFY1|80230|RUN and FYVE domain containing 1##BC032571|RUFY1|80230|RUN and FYVE domain containing 1##AK075021|RUFY1|80230|RUN and FYVE domain containing 1	0.0	0.0	
chr7	104537507	104537678	reg1004521.p1	7.572	+	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-568374	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-689161	-	NM_005045 NM_173054 U79716 AK293863 TSC_hg19_v1_chr7_-_103630014	-907596	-	TSC_hg19_v1_chr7_-_104567089 BC050337	29498	-	TSC_hg19_v1_chr7_-_104653491 AK124046	115890	-	TSC_hg19_v1_chr7_-_104654062 AK094372	116482	-	AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##NM_005045|RELN|5649|reelin##NM_173054|RELN|5649|reelin##U79716|RELN|5649|reelin##AK293863|RELN|5649|reelin##BC050337|LOC723809|723809|uncharacterized LOC723809##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545	0.993913	0.0	denovo_WM_7:-51:0.981
chr10	121679516	121679658	reg1004315.p1	7.571	+	NM_007190 TSC_hg19_v1_chr10_+_121652241 AB019435 AK021846 AK314592 AK001135 AK001135 AK301517 BC063800 BC063800 BC002540 AF116723 BX649119 BX649119 AB384691 CU687818 BT006755	-27398	+	AK023143 TSC_hg19_v1_chr10_-_121632359 BC004183 BC007219 NM_024834	-47247	-	TSC_hg19_v1_chr10_-_121602031 BC000935	-77524	-	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	537052	+	NM_018117 TSC_hg19_v1_chr10_+_122610771	931141	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	931308	+	NM_007190|SEC23IP|11196|SEC23 interacting protein##AB019435|SEC23IP|11196|SEC23 interacting protein##AK021846|SEC23IP|11196|SEC23 interacting protein##AK314592|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK301517|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC002540|SEC23IP|11196|SEC23 interacting protein##AF116723|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BT006755|SEC23IP|11196|SEC23 interacting protein##AK023143|MCMBP|79892|minichromosome maintenance complex binding protein##BC004183|MCMBP|79892|minichromosome maintenance complex binding protein##BC007219|MCMBP|79892|minichromosome maintenance complex binding protein##NM_024834|MCMBP|79892|minichromosome maintenance complex binding protein##BC000935|MCMBP|79892|minichromosome maintenance complex binding protein##NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##NM_018117|WDR11|55717|WD repeat domain 11##BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11	0.0	0.0	
chr1	63261799	63261942	reg1003580.p1	7.571	+	TSC_hg19_v1_chr1_+_63249807 NM_032852 NM_178221 AK027773 BC018678 BC033024 BC008395	-12057	+	DQ341187 TSC_hg19_v1_chr1_-_63154045 AK055401 NM_033407 AK292640	-107743	-	NM_014495 AK315304 TSC_hg19_v1_chr1_+_63063190 AK289426 BC007059 BC058287 AY358273 AF152562 AB590604 CU691298	-198659	+	AB464527 NM_012183	526859	+	TSC_hg19_v1_chr1_+_63789065 L12142	527214	+	NM_013339 AF063604 TSC_hg19_v1_chr1_+_63833313	571417	+	NM_032852|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##NM_178221|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##AK027773|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC018678|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC033024|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC008395|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##DQ341187|DOCK7|85440|dedicator of cytokinesis 7##AK055401|DOCK7|85440|dedicator of cytokinesis 7##NM_033407|DOCK7|85440|dedicator of cytokinesis 7##AK292640|DOCK7|85440|dedicator of cytokinesis 7##NM_014495|ANGPTL3|27329|angiopoietin-like 3##AK315304|ANGPTL3|27329|angiopoietin-like 3##AK289426|ANGPTL3|27329|angiopoietin-like 3##BC007059|ANGPTL3|27329|angiopoietin-like 3##BC058287|ANGPTL3|27329|angiopoietin-like 3##AY358273|ANGPTL3|27329|angiopoietin-like 3##AF152562|ANGPTL3|27329|angiopoietin-like 3##NM_012183|FOXD3|27022|forkhead box D3##L12142|FOXD3|27022|forkhead box D3##NM_013339|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AF063604|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)	1.980736	0.0	denovo_WM_7:-34:0.888
chr20	62357034	62357135	reg1004160.p1	7.571	+	TSC_hg19_v1_chr20_+_62339419 NM_001195653 NM_001195654 NM_032527 NM_181485 AK074961 AK122912 AK314726 BC032612 BC019338 AK307368 AK027878	-17688	+	TSC_hg19_v1_chr20_-_62339374 BC010068 NM_001134758 NM_003224	-17738	-	TSC_hg19_v1_chr20_-_62339259 BC092480 BC021023 BC093967 BC143447 BC143448 BC143467 BC143472 BC143477	-17845	-	TSC_hg19_v1_chr20_+_62368015 NM_017806 AK000413	10898	+	TSC_hg19_v1_chr20_+_62368035 BC017016	10956	+	TSC_hg19_v1_chr20_+_62371128 BC052306 AB052777 NM_020062	14076	+	NM_001195653|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##NM_001195654|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##NM_032527|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##NM_181485|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##AK074961|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##AK314726|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##BC032612|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##BC019338|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##AK027878|ZGPAT|84619|zinc finger, CCCH-type with G patch domain##NM_001134758|ARFRP1|10139|ADP-ribosylation factor related protein 1##NM_003224|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC092480|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC021023|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC093967|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC143447|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC143448|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC143467|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC143472|ARFRP1|10139|ADP-ribosylation factor related protein 1##BC143477|ARFRP1|10139|ADP-ribosylation factor related protein 1##NM_017806|LIME1|54923|Lck interacting transmembrane adaptor 1##AK000413|LIME1|54923|Lck interacting transmembrane adaptor 1##BC017016|LIME1|54923|Lck interacting transmembrane adaptor 1##BC052306|SLC2A4RG|56731|SLC2A4 regulator##AB052777|SLC2A4RG|56731|SLC2A4 regulator##NM_020062|SLC2A4RG|56731|SLC2A4 regulator	1.264622	0.0	denovo_WM_7:40:0.794
chr3	160131507	160131649	reg1004017.p1	7.571	+	NM_005496 AL136877	-13214	+	TSC_hg19_v1_chr3_+_160117456 BC065259 AL833949 BC001557	-14107	+	BC106033 TSC_hg19_v1_chr3_+_160117423 NM_001002800 AK002200 AK128143 AK225437 AK315070 BC070161 AB019987 AK307508	-14148	+	TSC_hg19_v1_chr3_-_160167549 AK291284	35959	-	TSC_hg19_v1_chr3_-_160167605 BC109259 BC109260 BC033011 BC068444 AY159379 NM_173084	36045	-	CU689904 AB002533 DQ890866 DQ894021 TSC_hg19_v1_chr3_-_160283092	151516	-	NM_005496|SMC4|10051|structural maintenance of chromosomes 4##AL136877|SMC4|10051|structural maintenance of chromosomes 4##BC065259|SMC4|10051|structural maintenance of chromosomes 4##AL833949|SMC4|10051|structural maintenance of chromosomes 4##BC001557|SMC4|10051|structural maintenance of chromosomes 4##BC106033|SMC4|10051|structural maintenance of chromosomes 4##NM_001002800|SMC4|10051|structural maintenance of chromosomes 4##AK002200|SMC4|10051|structural maintenance of chromosomes 4##AK128143|SMC4|10051|structural maintenance of chromosomes 4##AK225437|SMC4|10051|structural maintenance of chromosomes 4##AK315070|SMC4|10051|structural maintenance of chromosomes 4##BC070161|SMC4|10051|structural maintenance of chromosomes 4##AB019987|SMC4|10051|structural maintenance of chromosomes 4##AK307508|SMC4|10051|structural maintenance of chromosomes 4##AK291284|TRIM59|286827|tripartite motif containing 59##BC109259|TRIM59|286827|tripartite motif containing 59##BC109260|TRIM59|286827|tripartite motif containing 59##AY159379|TRIM59|286827|tripartite motif containing 59##NM_173084|TRIM59|286827|tripartite motif containing 59##AB002533|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##DQ890866|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##DQ894021|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)	0.094621	0.950574	CTCF.p2:44:0.951
chr1	207226279	207226415	reg1004936.p1	7.569	+	TSC_hg19_v1_chr1_-_207224335 AL833081 BC137166 BC137167 NM_018566	-1988	-	BC000765 AK093826 AX748327 AY352640 NM_001083924 NM_023938	-20299	-	AK298394 NM_001122979 NM_001170631 NM_032029	-82391	-	AK292883 TSC_hg19_v1_chr1_+_207226619 NM_001018053 NM_006212 AJ005578 AF470623 AB044805 BC112103 BC112105 BC069350 BC069385 BC069583 BC069586 BC069600 BC075075 BC075076	290	+	NM_001017365 NM_001017366	35864	+	BC005378 NM_000716 NM_001017364 L11245 NM_001017367 AK315137	36274	+	AL833081|YOD1|55432|YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)##BC137166|YOD1|55432|YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)##BC137167|YOD1|55432|YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)##NM_018566|YOD1|55432|YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)##BC000765|C1orf116|79098|chromosome 1 open reading frame 116##AK093826|C1orf116|79098|chromosome 1 open reading frame 116##AY352640|C1orf116|79098|chromosome 1 open reading frame 116##NM_001083924|C1orf116|79098|chromosome 1 open reading frame 116##NM_023938|C1orf116|79098|chromosome 1 open reading frame 116##AK298394|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001122979|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001170631|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_032029|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##AK292883|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##NM_001018053|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##NM_006212|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##AJ005578|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##AF470623|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##AB044805|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC112103|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC112105|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069350|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069385|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069583|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069586|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069600|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC075075|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC075076|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##NM_001017365|C4BPB|725|complement component 4 binding protein, beta##NM_001017366|C4BPB|725|complement component 4 binding protein, beta##BC005378|C4BPB|725|complement component 4 binding protein, beta##NM_000716|C4BPB|725|complement component 4 binding protein, beta##NM_001017364|C4BPB|725|complement component 4 binding protein, beta##L11245|C4BPB|725|complement component 4 binding protein, beta##NM_001017367|C4BPB|725|complement component 4 binding protein, beta##AK315137|C4BPB|725|complement component 4 binding protein, beta	0.0	0.0	
chrX	80376509	80376651	reg1003369.p1	7.569	+	BC111490 AY497046 AY497048 AY497049 AY497050 AY497051 AY497052 AY497053 AY497054 AY497055 NM_153252	-311373	-	BX537938 NM_152630 BC030784 AK313875 BC028710 BC034979	-700618	+	AK128147 NM_001170574	-785578	+	NM_003022 AK024892 AK309350 BC103762 TSC_hg19_v1_chrX_+_80457495	80823	+	AK094058 AX748432 NM_030763	80860	-	TSC_hg19_v1_chrX_+_80457572 AK309351	80996	+	BC111490|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497046|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497048|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497049|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497050|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497051|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497052|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497053|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497054|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497055|BRWD3|254065|bromodomain and WD repeat domain containing 3##NM_153252|BRWD3|254065|bromodomain and WD repeat domain containing 3##BX537938|FAM46D|169966|family with sequence similarity 46, member D##NM_152630|FAM46D|169966|family with sequence similarity 46, member D##BC030784|FAM46D|169966|family with sequence similarity 46, member D##AK313875|FAM46D|169966|family with sequence similarity 46, member D##BC028710|FAM46D|169966|family with sequence similarity 46, member D##BC034979|FAM46D|169966|family with sequence similarity 46, member D##AK128147|FAM46D|169966|family with sequence similarity 46, member D##NM_001170574|FAM46D|169966|family with sequence similarity 46, member D##NM_003022|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK024892|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309350|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC103762|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like	0.990305	0.0	denovo_WM_7:-5:0.793
chr9	94177787	94177920	reg1005079.p1	7.567	+	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-53654	-	TSC_hg19_v1_chr9_-_94124185 AB528075 AM393420 CU676666 DQ892036 DQ895227 X79888 AK302453	-53683	-	NM_001174167 X73568	-588120	+	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	8191	-	TSC_hg19_v1_chr9_-_94186159 NM_005384	8329	-	TSC_hg19_v1_chr9_-_94711095 BC033697	533275	-	BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AM393420|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ892036|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ895227|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##X79888|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK302453|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001174167|SYK|6850|spleen tyrosine kinase##X73568|SYK|6850|spleen tyrosine kinase##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2	0.993959	0.0	denovo_WM_7:59:0.706
chr14	35342098	35342236	reg1003869.p1	7.566	+	TSC_hg19_v1_chr14_-_35183800 NM_001243645 AF134803 BC022364 BC022876 BC025683 NM_138638	-158292	-	BC011444 AK314157 NM_021914 AF134802	-159179	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	-242812	-	AB593178 TSC_hg19_v1_chr14_+_35343416 BC039097	1309	+	TSC_hg19_v1_chr14_-_35344080 BC020636	1941	-	AF086397 AF213467 TSC_hg19_v1_chr14_-_35344486	2302	-	NM_001243645|CFL2|1073|cofilin 2 (muscle)##AF134803|CFL2|1073|cofilin 2 (muscle)##BC022364|CFL2|1073|cofilin 2 (muscle)##BC022876|CFL2|1073|cofilin 2 (muscle)##BC025683|CFL2|1073|cofilin 2 (muscle)##NM_138638|CFL2|1073|cofilin 2 (muscle)##BC011444|CFL2|1073|cofilin 2 (muscle)##AK314157|CFL2|1073|cofilin 2 (muscle)##NM_021914|CFL2|1073|cofilin 2 (muscle)##AF134802|CFL2|1073|cofilin 2 (muscle)##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6##BC020636|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF086397|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF213467|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A	2.137752	0.0	denovo_WM_7:-25:0.772	denovo_WM_7:-40:0.794
chr1	33238719	33238867	reg1004688.p1	7.565	+	TSC_hg19_v1_chr1_+_33231274 AB040955	-7522	+	TSC_hg19_v1_chr1_+_33231234 AK298965 NM_001198972 NM_001198973	-7562	+	TSC_hg19_v1_chr1_+_33219620 AB384615	-19178	+	U40714 U89436 DQ891666 DQ894853 TSC_hg19_v1_chr1_-_33282932 BC001933 BC004151 BC016689 AK026535 AK223608	44126	-	AK090711 AX746586 TSC_hg19_v1_chr1_+_33283180 BX647916 NM_001017406 NM_022753 BX647667	44324	+	TSC_hg19_v1_chr1_+_33283215 BC015175	44519	+	AB040955|KIAA1522|57648|KIAA1522##AK298965|KIAA1522|57648|KIAA1522##NM_001198972|KIAA1522|57648|KIAA1522##NM_001198973|KIAA1522|57648|KIAA1522##U40714|YARS|8565|tyrosyl-tRNA synthetase##U89436|YARS|8565|tyrosyl-tRNA synthetase##DQ891666|YARS|8565|tyrosyl-tRNA synthetase##DQ894853|YARS|8565|tyrosyl-tRNA synthetase##BC001933|YARS|8565|tyrosyl-tRNA synthetase##BC004151|YARS|8565|tyrosyl-tRNA synthetase##BC016689|YARS|8565|tyrosyl-tRNA synthetase##AK026535|YARS|8565|tyrosyl-tRNA synthetase##AK223608|YARS|8565|tyrosyl-tRNA synthetase##AK090711|S100PBP|64766|S100P binding protein##BX647916|S100PBP|64766|S100P binding protein##NM_001017406|S100PBP|64766|S100P binding protein##NM_022753|S100PBP|64766|S100P binding protein##BX647667|S100PBP|64766|S100P binding protein##BC015175|S100PBP|64766|S100P binding protein	0.0	0.990619	CTCF.p2:-9:0.991
chr15	97433287	97433425	reg1003432.p1	7.565	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-106684	+	NM_001145157	-556788	+	AK316086 NM_001145156	-557563	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1070563	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	1070595	+	AK097062 AK097062 NM_182562	1624254	-	AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B	0.98307	0.0	denovo_WM_7:13:0.223	denovo_WM_7:14:0.415	denovo_WM_7:18:0.239
chr1	112936787	112936919	reg1004255.p1	7.564	+	AY863198 AF120491 NM_004980 NM_172198	-405131	-	TSC_hg19_v1_chr1_+_112298524 AK301697 AK001506 BC031062 BC011556 AF106019 AF155803 AK314312 DQ892249 DQ895449 CU679958	-638304	+	AL137199 NM_198926 AK293989 TSC_hg19_v1_chr1_-_112298450	-638418	-	NM_018704 TSC_hg19_v1_chr1_+_112938844 AK023340	1973	+	TSC_hg19_v1_chr1_+_112938871 BC016029 AK022544 AK092791 AX747733	2015	+	AB045116 NM_004185	73186	+	AF120491|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_004980|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_172198|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##AK301697|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK001506|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC031062|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC011556|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF106019|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF155803|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK314312|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ892249|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ895449|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AL137199|FAM212B|55924|family with sequence similarity 212, member B##NM_198926|FAM212B|55924|family with sequence similarity 212, member B##AK293989|FAM212B|55924|family with sequence similarity 212, member B##NM_018704|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK023340|CTTNBP2NL|55917|CTTNBP2 N-terminal like##BC016029|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK022544|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK092791|LOC100129406|100129406|uncharacterized LOC100129406##AB045116|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_004185|WNT2B|7482|wingless-type MMTV integration site family, member 2B	1.263617	0.0	denovo_WM_7:-16:0.243	denovo_WM_7:-17:0.244
chr13	30687244	30687395	reg1004487.p1	7.564	+	TSC_hg19_v1_chr13_-_30424811 NM_007106	-262478	-	TSC_hg19_v1_chr13_-_30424719 AK056580	-262617	-	BC059385 BC044582 TSC_hg19_v1_chr13_-_30424481	-262913	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	193832	-	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	194250	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	352674	-	NM_007106|UBL3|5412|ubiquitin-like 3##AK056580|UBL3|5412|ubiquitin-like 3##BC059385|UBL3|5412|ubiquitin-like 3##BC044582|UBL3|5412|ubiquitin-like 3##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1	0.869295	0.0	denovo_WM_7:50:0.260	denovo_WM_7:52:0.534
chr1	213429842	213430005	reg1004299.p2	7.563	+	TSC_hg19_v1_chr1_+_213224716 AB070706 EF491805	-205163	+	TSC_hg19_v1_chr1_+_213224692 BC104769 BC143449 BC143473 BC143474	-205246	+	TSC_hg19_v1_chr1_+_213224631 AK122989 NM_001136138 NM_012424 AK299298 AF477978 AK122921 AK295053	-205336	+	AK298182 TSC_hg19_v1_chr1_+_214161296 U44060	731366	+	BC024201 NM_002763	731936	+	TSC_hg19_v1_chr1_+_214454550 BC068511 BC049367 BC094747 BC057793 NM_020197 AF226053 BC098133 BC098276 BC098305 BC098335 BC028104 AK313868 AB590916 BC039890	1024514	+	AB070706|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC104769|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143449|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143473|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143474|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK122989|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##NM_001136138|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##NM_012424|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK299298|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AF477978|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK122921|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK295053|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK298182|PROX1|5629|prospero homeobox 1##U44060|PROX1|5629|prospero homeobox 1##BC024201|PROX1|5629|prospero homeobox 1##NM_002763|PROX1|5629|prospero homeobox 1##BC068511|SMYD2|56950|SET and MYND domain containing 2##BC049367|SMYD2|56950|SET and MYND domain containing 2##BC094747|SMYD2|56950|SET and MYND domain containing 2##BC057793|SMYD2|56950|SET and MYND domain containing 2##NM_020197|SMYD2|56950|SET and MYND domain containing 2##AF226053|SMYD2|56950|SET and MYND domain containing 2##BC098133|SMYD2|56950|SET and MYND domain containing 2##BC098276|SMYD2|56950|SET and MYND domain containing 2##BC098305|SMYD2|56950|SET and MYND domain containing 2##BC098335|SMYD2|56950|SET and MYND domain containing 2##BC028104|SMYD2|56950|SET and MYND domain containing 2##AK313868|SMYD2|56950|SET and MYND domain containing 2##BC039890|SMYD2|56950|SET and MYND domain containing 2	0.997692	0.0	denovo_WM_7:-38:0.527	denovo_WM_7:-39:0.470
chr17	73854859	73854982	reg1004224.p1	7.563	+	AB464357 CU679759 DQ891052 DQ894231 TSC_hg19_v1_chr17_-_73851417 AK293214 AF087866 BC007452 AK057881 BC010616 AK294082 AK294155 AK300875 NM_012478	-3482	-	TSC_hg19_v1_chr17_-_73840622 BC067084 NM_199242 AK300316	-14136	-	TSC_hg19_v1_chr17_-_73840495 AK024474	-14409	-	TSC_hg19_v1_chr17_-_73874063 BC017299	19143	-	TSC_hg19_v1_chr17_-_73874663 AY026763 NM_033452	19731	-	TSC_hg19_v1_chr17_-_73893051 BC021259 NM_173547	38143	-	DQ891052|WBP2|23558|WW domain binding protein 2##DQ894231|WBP2|23558|WW domain binding protein 2##AK293214|WBP2|23558|WW domain binding protein 2##AF087866|WBP2|23558|WW domain binding protein 2##BC007452|WBP2|23558|WW domain binding protein 2##AK057881|WBP2|23558|WW domain binding protein 2##BC010616|WBP2|23558|WW domain binding protein 2##AK294082|WBP2|23558|WW domain binding protein 2##AK294155|WBP2|23558|WW domain binding protein 2##AK300875|WBP2|23558|WW domain binding protein 2##NM_012478|WBP2|23558|WW domain binding protein 2##BC067084|UNC13D|201294|unc-13 homolog D (C. elegans)##NM_199242|UNC13D|201294|unc-13 homolog D (C. elegans)##AK300316|UNC13D|201294|unc-13 homolog D (C. elegans)##AK024474|UNC13D|201294|unc-13 homolog D (C. elegans)##BC017299|TRIM47|91107|tripartite motif containing 47##AY026763|TRIM47|91107|tripartite motif containing 47##NM_033452|TRIM47|91107|tripartite motif containing 47##BC021259|TRIM65|201292|tripartite motif containing 65##NM_173547|TRIM65|201292|tripartite motif containing 65	0.996451	0.0	denovo_WM_7:-54:0.996
chr14	68794001	68794165	reg1004396.p2	7.562	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-507563	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-510784	-	AK315462 NM_152443	-625481	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	465637	-	NM_001244698 NM_004926	466547	-	NM_001244701 AB528867	468901	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	1.380285	0.0	denovo_WM_7:21:0.456	denovo_WM_7:22:0.359
chr19	10359304	10359451	reg1003531.p3	7.561	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-17371	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-53650	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-53772	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	3270	+	TSC_hg19_v1_chr19_+_10362889 BC009858	3521	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	3615	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.9973	0.0	
chr3	151986777	151986948	reg1002202.p2	7.561	+	TSC_hg19_v1_chr3_+_151986753 BC050535 BC043493	-120	+	NM_021038 NM_207292	-1034	+	TSC_hg19_v1_chr3_+_151591430 AK290420 NM_033050 BC030948 AF247785	-395409	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	483	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	30331	+	AY358260 NM_001123228	71916	-	BC050535|MBNL1|4154|muscleblind-like (Drosophila)##BC043493|MBNL1|4154|muscleblind-like (Drosophila)##NM_021038|MBNL1|4154|muscleblind-like (Drosophila)##NM_207292|MBNL1|4154|muscleblind-like (Drosophila)##AK290420|SUCNR1|56670|succinate receptor 1##NM_033050|SUCNR1|56670|succinate receptor 1##BC030948|SUCNR1|56670|succinate receptor 1##AF247785|SUCNR1|56670|succinate receptor 1##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E	0.0	0.0	
chr3	46341768	46341942	reg1004149.p2	7.561	+	NM_001164680 NM_001837 NM_178328 NM_178329 AF262300 AF262299 AF224495 AF262301 AF262302 AF262303 AF262304 BC130318 BC130320 BC110297	-57939	+	BC064991 TSC_hg19_v1_chr3_-_46249804 L10918 BC051306 NM_001295	-92046	-	AB189434 AB189435 NM_001024644 NM_005283	-272877	-	AK292685 NM_001123041 NM_001123396	53374	+	TSC_hg19_v1_chr3_+_46395601 AK292920 U03905	53752	+	NM_000579 NM_001100168	69777	+	NM_001164680|CCR3|1232|chemokine (C-C motif) receptor 3##NM_001837|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178328|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178329|CCR3|1232|chemokine (C-C motif) receptor 3##AF262300|CCR3|1232|chemokine (C-C motif) receptor 3##AF262299|CCR3|1232|chemokine (C-C motif) receptor 3##AF224495|CCR3|1232|chemokine (C-C motif) receptor 3##AF262301|CCR3|1232|chemokine (C-C motif) receptor 3##AF262302|CCR3|1232|chemokine (C-C motif) receptor 3##AF262303|CCR3|1232|chemokine (C-C motif) receptor 3##AF262304|CCR3|1232|chemokine (C-C motif) receptor 3##BC130318|CCR3|1232|chemokine (C-C motif) receptor 3##BC130320|CCR3|1232|chemokine (C-C motif) receptor 3##BC110297|CCR3|1232|chemokine (C-C motif) receptor 3##BC064991|CCR1|1230|chemokine (C-C motif) receptor 1##L10918|CCR1|1230|chemokine (C-C motif) receptor 1##BC051306|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001295|CCR1|1230|chemokine (C-C motif) receptor 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1##AK292685|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123041|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123396|CCR2|729230|chemokine (C-C motif) receptor 2##AK292920|CCR2|729230|chemokine (C-C motif) receptor 2##U03905|CCR2|729230|chemokine (C-C motif) receptor 2##NM_000579|CCR5|1234|chemokine (C-C motif) receptor 5##NM_001100168|CCR5|1234|chemokine (C-C motif) receptor 5	0.995414	0.0	
chr2	62277897	62278046	reg1004262.p1	7.560	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-145142	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-162185	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-162237	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	145295	+	BC047439 AK091902 AX747245 NM_198276	455568	-	AK292545 NM_001142615	623014	+	AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1	0.129925	0.0	
chr3	124754220	124754338	reg1004669.p1	7.560	+	BC067235 TSC_hg19_v1_chr3_-_124732404	-21887	-	AF286113 AB035807 AY358831 TSC_hg19_v1_chr3_-_124653596 NM_033049	-100696	-	TSC_hg19_v1_chr3_-_124606213 BC006541 NM_002213 X53002	-148068	-	AB384586 NM_020733 TSC_hg19_v1_chr3_-_124774842	20521	-	BC063528 TSC_hg19_v1_chr3_-_124842461	88176	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	175938	-	BC067235|HEG1|57493|HEG homolog 1 (zebrafish)##AF286113|MUC13|56667|mucin 13, cell surface associated##AB035807|MUC13|56667|mucin 13, cell surface associated##AY358831|MUC13|56667|mucin 13, cell surface associated##NM_033049|MUC13|56667|mucin 13, cell surface associated##BC006541|ITGB5|3693|integrin, beta 5##NM_002213|ITGB5|3693|integrin, beta 5##X53002|ITGB5|3693|integrin, beta 5##NM_020733|HEG1|57493|HEG homolog 1 (zebrafish)##BC063528|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	0.0	0.0	
chr6	25050646	25050802	reg1004847.p1	7.560	+	TSC_hg19_v1_chr6_-_24936189 AK299047	-114541	-	AB002384 NM_014722	-139530	-	U49187 AK300138 BC001232 NM_015864	-173207	-	TSC_hg19_v1_chr6_+_25279316 BC040903	228594	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	228934	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	229170	+	AK299047|FAM65B|9750|family with sequence similarity 65, member B##AB002384|FAM65B|9750|family with sequence similarity 65, member B##NM_014722|FAM65B|9750|family with sequence similarity 65, member B##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A	0.99902	0.0	denovo_WM_7:-18:0.314	denovo_WM_7:-19:0.314	denovo_WM_7:-20:0.314
chr11	14346739	14346873	reg1004618.p1	7.559	+	TSC_hg19_v1_chr11_+_13984277 NM_006108 AK291780 AK074803 BC136513 BC136563 BC006262 AB051390	-362523	+	AY423606 BC017377 TSC_hg19_v1_chr11_+_13690267 AY600449	-656539	+	TSC_hg19_v1_chr11_+_13690255 AK315527 AK026381	-656553	+	AK309550 AK309683 NM_001177315 NM_001102669	33245	-	TSC_hg19_v1_chr11_-_14380730 BC013106 AK299606 AK313976 NM_012250	33871	-	AK300103 NM_001177314	39245	-	NM_006108|SPON1|10418|spondin 1, extracellular matrix protein##AK291780|SPON1|10418|spondin 1, extracellular matrix protein##AK074803|SPON1|10418|spondin 1, extracellular matrix protein##BC136513|SPON1|10418|spondin 1, extracellular matrix protein##BC136563|SPON1|10418|spondin 1, extracellular matrix protein##AB051390|SPON1|10418|spondin 1, extracellular matrix protein##AY423606|FAR1|84188|fatty acyl CoA reductase 1##BC017377|FAR1|84188|fatty acyl CoA reductase 1##AY600449|FAR1|84188|fatty acyl CoA reductase 1##AK315527|FAR1|84188|fatty acyl CoA reductase 1##AK026381|FAR1|84188|fatty acyl CoA reductase 1##AK309550|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK309683|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177315|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001102669|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##BC013106|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK299606|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK313976|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_012250|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK300103|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177314|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2	0.994615	0.0	
chr4	76769544	76769648	reg1004225.p1	7.557	+	TSC_hg19_v1_chr4_+_76649846 D86326 NM_003715 BC032654 AB590104 AM392946 AM393489 CU689466 DQ894066 EU176195	-119682	+	TSC_hg19_v1_chr4_+_76649814 AK314289	-119781	+	TSC_hg19_v1_chr4_+_76649761 BC016672 AL832010 BC006398	-119832	+	BX648754 AF023456 NM_006239	54031	-	TSC_hg19_v1_chr4_-_76862135 AB161353 AK309271 BC006388 BC011854 NM_001042402 NM_014435	92533	-	TSC_hg19_v1_chr4_-_76878561 AF132198	108965	-	D86326|USO1|8615|USO1 vesicle docking protein homolog (yeast)##NM_003715|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC032654|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AM392946|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AM393489|USO1|8615|USO1 vesicle docking protein homolog (yeast)##DQ894066|USO1|8615|USO1 vesicle docking protein homolog (yeast)##EU176195|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AK314289|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC016672|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AL832010|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC006398|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BX648754|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##AF023456|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##NM_006239|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##AB161353|NAAA|27163|N-acylethanolamine acid amidase##AK309271|NAAA|27163|N-acylethanolamine acid amidase##BC006388|NAAA|27163|N-acylethanolamine acid amidase##BC011854|NAAA|27163|N-acylethanolamine acid amidase##NM_001042402|NAAA|27163|N-acylethanolamine acid amidase##NM_014435|NAAA|27163|N-acylethanolamine acid amidase##AF132198|SDAD1|55153|SDA1 domain containing 1	0.0	0.565145	CTCF.p2:2:0.565
chr12	15114487	15114647	reg1005164.p2	7.555	+	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	-19	-	CU688844 BC030218 AY358536 NM_152321 AK056677	-23106	-	BT006733 CR450358 DQ892495 DQ895707 X07362 AY542304 M58549 BC070314 X53331 BC005272 AK310040 AK312029 BC093078 TSC_hg19_v1_chr12_-_15038794 NM_000900 NM_001190839	-75779	-	NM_006205 DQ980604 D45399	11399	+	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	259783	-	NM_002848 NM_030667 TSC_hg19_v1_chr12_+_15475264 AB209729	360693	+	BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##BT006733|MGP|4256|matrix Gla protein##CR450358|MGP|4256|matrix Gla protein##DQ892495|MGP|4256|matrix Gla protein##DQ895707|MGP|4256|matrix Gla protein##X07362|MGP|4256|matrix Gla protein##AY542304|MGP|4256|matrix Gla protein##M58549|MGP|4256|matrix Gla protein##BC070314|MGP|4256|matrix Gla protein##X53331|MGP|4256|matrix Gla protein##BC005272|MGP|4256|matrix Gla protein##AK312029|MGP|4256|matrix Gla protein##BC093078|MGP|4256|matrix Gla protein##NM_000900|MGP|4256|matrix Gla protein##NM_001190839|MGP|4256|matrix Gla protein##NM_006205|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##DQ980604|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##D45399|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_002848|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030667|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AB209729|PTPRO|5800|protein tyrosine phosphatase, receptor type, O	0.0	0.0	
chr16	27274208	27274324	reg1003525.p1	7.555	+	AK297166 NM_001145348	-58971	+	NM_024773 AK023860 BC027911 AK310885 TSC_hg19_v1_chr16_+_27214846 AK225066	-59439	+	NM_001145545 BC031257 AK311574	-196019	+	TSC_hg19_v1_chr16_-_27280055 AK315674	5786	-	TSC_hg19_v1_chr16_-_27280058 AF161451 AF161455 AK056795 NM_145080	5819	-	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	50988	+	AK297166|JMJD5|79831|jumonji domain containing 5##NM_001145348|JMJD5|79831|jumonji domain containing 5##NM_024773|JMJD5|79831|jumonji domain containing 5##AK023860|JMJD5|79831|jumonji domain containing 5##BC027911|JMJD5|79831|jumonji domain containing 5##AK310885|JMJD5|79831|jumonji domain containing 5##AK225066|JMJD5|79831|jumonji domain containing 5##NM_001145545|C16orf82|162083|chromosome 16 open reading frame 82##BC031257|C16orf82|162083|chromosome 16 open reading frame 82##AK311574|C16orf82|162083|chromosome 16 open reading frame 82##AK315674|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161451|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161455|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK056795|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##NM_145080|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor	0.0	0.0	
chr6	158692162	158692312	reg1004020.p1	7.554	+	NM_207118 TSC_hg19_v1_chr6_+_158589381 AK055106 BC056906 AJ634743	-102846	+	TSC_hg19_v1_chr6_-_158589295 AK027823 BC060795 NM_032861	-102937	-	BC048335 BC001705 BC028594 BX648104 TSC_hg19_v1_chr6_-_158589279	-102997	-	AB037818 AF219946 AF288480 BC152476 NM_001007466 NM_020245 AK311671	41460	+	AK304056 TSC_hg19_v1_chr6_+_158734584	42293	+	TSC_hg19_v1_chr6_+_158734935 AF087973	42682	+	NM_207118|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AK055106|GTF2H5|404672|general transcription factor IIH, polypeptide 5##BC056906|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AJ634743|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AK027823|SERAC1|84947|serine active site containing 1##BC060795|SERAC1|84947|serine active site containing 1##NM_032861|SERAC1|84947|serine active site containing 1##BC048335|SERAC1|84947|serine active site containing 1##BC001705|SERAC1|84947|serine active site containing 1##BC028594|SERAC1|84947|serine active site containing 1##BX648104|SERAC1|84947|serine active site containing 1##AB037818|TULP4|56995|tubby like protein 4##AF219946|TULP4|56995|tubby like protein 4##AF288480|TULP4|56995|tubby like protein 4##BC152476|TULP4|56995|tubby like protein 4##NM_001007466|TULP4|56995|tubby like protein 4##NM_020245|TULP4|56995|tubby like protein 4##AK304056|TULP4|56995|tubby like protein 4	0.993766	0.0	
chr9	5976825	5976987	reg1004318.p1	7.552	+	BC108654 TSC_hg19_v1_chr9_-_5968443	-8498	-	U06654 BC014423 AK312149 NM_005511 U06452	-86052	+	TSC_hg19_v1_chr9_-_5833082 NM_024896	-143828	-	TSC_hg19_v1_chr9_-_6007953 NM_001017969	31058	-	AF039023 AK300408 BC098406 TSC_hg19_v1_chr9_-_6015616 AK307840 BX537405 NM_001243202 NM_001243203 NM_012416	38725	-	NM_001199640 NM_001199641 NM_033439 AK295908 AK313414 TSC_hg19_v1_chr9_+_6215806 AK303943 BC047085	238890	+	U06654|MLANA|2315|melan-A##BC014423|MLANA|2315|melan-A##AK312149|MLANA|2315|melan-A##NM_005511|MLANA|2315|melan-A##U06452|MLANA|2315|melan-A##NM_024896|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##NM_001017969|KIAA2026|158358|KIAA2026##AF039023|RANBP6|26953|RAN binding protein 6##AK300408|RANBP6|26953|RAN binding protein 6##BC098406|RANBP6|26953|RAN binding protein 6##BX537405|RANBP6|26953|RAN binding protein 6##NM_001243202|RANBP6|26953|RAN binding protein 6##NM_001243203|RANBP6|26953|RAN binding protein 6##NM_012416|RANBP6|26953|RAN binding protein 6##NM_001199640|IL33|90865|interleukin 33##NM_001199641|IL33|90865|interleukin 33##NM_033439|IL33|90865|interleukin 33##AK295908|IL33|90865|interleukin 33##AK313414|IL33|90865|interleukin 33##AK303943|IL33|90865|interleukin 33##BC047085|IL33|90865|interleukin 33	0.0	0.0	
chr10	26769451	26769631	reg1003379.p1	7.549	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-41835	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-41873	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-42224	+	AK096048 TSC_hg19_v1_chr10_-_26986612	217043	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	217105	+	TSC_hg19_v1_chr10_-_27057776 AK315914	288276	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	1.676682	0.0	denovo_WM_7:12:0.619	denovo_WM_7:27:0.679
chr17	41739799	41739953	reg1004584.p2	7.549	+	NM_001040002 AK291139	-601	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	-961	-	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-116150	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	96267	-	AK226170 TSC_hg19_v1_chr17_-_41856314 AB451424 BT019522 CU678116 DQ893122 DQ896399 BC035701 AK129822 L05147 BC002682 NM_004090	116408	-	BC054872 BC070324 NM_001136483 BC146971 AK125817	117938	+	NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin##AK226170|DUSP3|1845|dual specificity phosphatase 3##AB451424|DUSP3|1845|dual specificity phosphatase 3##BT019522|DUSP3|1845|dual specificity phosphatase 3##DQ893122|DUSP3|1845|dual specificity phosphatase 3##DQ896399|DUSP3|1845|dual specificity phosphatase 3##BC035701|DUSP3|1845|dual specificity phosphatase 3##AK129822|DUSP3|1845|dual specificity phosphatase 3##L05147|DUSP3|1845|dual specificity phosphatase 3##BC002682|DUSP3|1845|dual specificity phosphatase 3##NM_004090|DUSP3|1845|dual specificity phosphatase 3##BC054872|C17orf105|284067|chromosome 17 open reading frame 105##BC070324|C17orf105|284067|chromosome 17 open reading frame 105##NM_001136483|C17orf105|284067|chromosome 17 open reading frame 105##BC146971|C17orf105|284067|chromosome 17 open reading frame 105##AK125817|C17orf105|284067|chromosome 17 open reading frame 105	0.0	0.0	
chr4	162669654	162669823	reg1004968.p1	7.549	+	AK294459 NM_014247	-2480741	+	AK058100 NM_152543	-2713406	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-2979453	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	415413	-	TSC_hg19_v1_chr4_-_164088002 AK097352	1418254	-	TSC_hg19_v1_chr4_-_164088043 AK308601	1418299	-	AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##AK308601|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.98632	0.0	
chr5	169228084	169228263	reg1003645.p2	7.546	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-163873	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-163929	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-217452	+	AK055998 NM_001129891	179570	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	304798	+	BC030767 NM_001102609 BC092511	431823	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	1.987954	0.0	denovo_WM_7:4:0.225	denovo_WM_7:5:0.270	denovo_WM_7:-13:0.232	denovo_WM_7:-14:0.277
chr8	9170450	9170576	reg1003540.p1	7.546	+	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	-161413	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	-162335	-	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-310008	+	TSC_hg19_v1_chr8_+_9413421 BC098394	242892	+	TSC_hg19_v1_chr8_+_9413423 AK302031	242910	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	242968	+	AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	1.900928	0.0	denovo_WM_7:77:0.439	denovo_WM_7:93:0.398	denovo_WM_7:95:0.288
chr12	27360115	27360289	reg1004317.p1	7.545	+	NM_001080406	-124748	-	TSC_hg19_v1_chr12_+_27175501 U46837 U52960 AB463863 EU446930 AK311838 CR456999	-184687	+	AK309064 BC008380 NM_004264 TSC_hg19_v1_chr12_+_27175482	-184720	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	36922	+	TSC_hg19_v1_chr12_+_27397187 AK291055	36985	+	TSC_hg19_v1_chr12_+_27397225 AK304755	37023	+	NM_001080406|C12orf71|728858|chromosome 12 open reading frame 71##U46837|MED21|9412|mediator complex subunit 21##U52960|MED21|9412|mediator complex subunit 21##EU446930|MED21|9412|mediator complex subunit 21##AK311838|MED21|9412|mediator complex subunit 21##CR456999|MED21|9412|mediator complex subunit 21##AK309064|MED21|9412|mediator complex subunit 21##BC008380|MED21|9412|mediator complex subunit 21##NM_004264|MED21|9412|mediator complex subunit 21##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##AK304755|STK38L|23012|serine/threonine kinase 38 like	0.99636	0.0	denovo_WM_7:-13:0.304	denovo_WM_7:-14:0.304	denovo_WM_7:-15:0.304
chr20	6816396	6816524	reg1004987.p2	7.545	+	BC069214 NM_001200	-67716	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-712297	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-712583	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1104642	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1183840	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1183947	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.010112	0.0	
chr10	103634961	103635082	reg1004593.p1	7.544	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-31414	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-35409	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-56803	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	180891	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	190121	+	AK300588 TSC_hg19_v1_chr10_-_103874641	239598	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.968511	0.0	denovo_WM_7:-23:0.617	denovo_WM_7:-24:0.243
chr15	42797236	42797401	reg1004558.p2	7.544	+	U55936 TSC_hg19_v1_chr15_+_42787875 BC022890 BC003686 AK313161 BC000148 AJ011915	-9451	+	AK290152 AK315279 NM_003825 NM_130798	-9838	+	TSC_hg19_v1_chr15_-_42783322 AK226132 BX649141 AK302735	-13994	-	BX538324 TSC_hg19_v1_chr15_-_42840973 BC051262 BC058935 AK094131 CR749223 AK309861	43632	-	TSC_hg19_v1_chr15_-_42840992 AK094891 NM_153260	43686	-	TSC_hg19_v1_chr15_+_42841055 NM_001130447 NM_018097 AK022939 BC010903 AK001322	43711	+	U55936|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC022890|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC003686|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK313161|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC000148|SNAP23|8773|synaptosomal-associated protein, 23kDa##AJ011915|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK290152|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK315279|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_003825|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_130798|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK226132|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK302735|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BX538324|LRRC57|255252|leucine rich repeat containing 57##BC051262|LRRC57|255252|leucine rich repeat containing 57##BC058935|LRRC57|255252|leucine rich repeat containing 57##AK094131|LRRC57|255252|leucine rich repeat containing 57##CR749223|LRRC57|255252|leucine rich repeat containing 57##AK309861|LRRC57|255252|leucine rich repeat containing 57##AK094891|LRRC57|255252|leucine rich repeat containing 57##NM_153260|LRRC57|255252|leucine rich repeat containing 57##NM_001130447|HAUS2|55142|HAUS augmin-like complex, subunit 2##NM_018097|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK022939|HAUS2|55142|HAUS augmin-like complex, subunit 2##BC010903|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK001322|HAUS2|55142|HAUS augmin-like complex, subunit 2	0.998314	0.0	denovo_WM_7:-14:0.556
chr2	85716220	85716308	reg1003957.p1	7.544	+	AF450483 NM_198482	-54347	+	TSC_hg19_v1_chr2_-_85641171 AK309290	-75098	-	TSC_hg19_v1_chr2_-_85641140 AK313898 AK300507	-75128	-	NM_005911	49836	+	TSC_hg19_v1_chr2_+_85766290 AK294208 AK293841 AK297758 AK297797 AK303877 AK308591 AK311142 AK311612	50024	+	TSC_hg19_v1_chr2_+_85766291 AK291126 BC001686 BC001854 X68836 DQ083239 AB529143 CU674832	50086	+	AF450483|SH2D6|284948|SH2 domain containing 6##NM_198482|SH2D6|284948|SH2 domain containing 6##AK309290|CAPG|822|capping protein (actin filament), gelsolin-like##AK313898|CAPG|822|capping protein (actin filament), gelsolin-like##AK300507|CAPG|822|capping protein (actin filament), gelsolin-like##NM_005911|MAT2A|4144|methionine adenosyltransferase II, alpha##AK293841|MAT2A|4144|methionine adenosyltransferase II, alpha##AK297758|MAT2A|4144|methionine adenosyltransferase II, alpha##AK297797|MAT2A|4144|methionine adenosyltransferase II, alpha##AK303877|MAT2A|4144|methionine adenosyltransferase II, alpha##AK308591|MAT2A|4144|methionine adenosyltransferase II, alpha##AK291126|MAT2A|4144|methionine adenosyltransferase II, alpha##BC001686|MAT2A|4144|methionine adenosyltransferase II, alpha##BC001854|MAT2A|4144|methionine adenosyltransferase II, alpha##X68836|MAT2A|4144|methionine adenosyltransferase II, alpha##DQ083239|MAT2A|4144|methionine adenosyltransferase II, alpha	2.764149	0.0	denovo_WM_7:44:0.707	denovo_WM_7:-87:0.416	denovo_WM_7:-88:0.416
chr1	236051423	236051574	reg1003507.p2	7.543	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-21254	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-21315	-	BC022485 NM_001098721 NM_004485	-237445	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	176879	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	176927	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	176980	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	1.574548	0.0	
chr15	79169378	79169498	reg1004228.p2	7.543	+	TSC_hg19_v1_chr15_+_79165343 AK300789 BC067826 AB385578 CU692730 DQ892602 DQ895837 AK310181	-4075	+	TSC_hg19_v1_chr15_+_79165314 AK310702 BC141840 AF070664 AF167173 AK310592 AL137697 AF109188 AF161546	-4119	+	TSC_hg19_v1_chr15_+_79165283 AK098485 AF218011 AF100615 AY148481 AK296650 BC002936 BC022845	-4191	+	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	67897	-	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	67961	-	NM_153815 S62035	128563	-	AK300789|MORF4L1|10933|mortality factor 4 like 1##BC067826|MORF4L1|10933|mortality factor 4 like 1##DQ892602|MORF4L1|10933|mortality factor 4 like 1##DQ895837|MORF4L1|10933|mortality factor 4 like 1##AK310181|MORF4L1|10933|mortality factor 4 like 1##AK310702|MORF4L1|10933|mortality factor 4 like 1##BC141840|MORF4L1|10933|mortality factor 4 like 1##AF070664|MORF4L1|10933|mortality factor 4 like 1##AF167173|MORF4L1|10933|mortality factor 4 like 1##AK310592|MORF4L1|10933|mortality factor 4 like 1##AL137697|MORF4L1|10933|mortality factor 4 like 1##AF109188|MORF4L1|10933|mortality factor 4 like 1##AF161546|MORF4L1|10933|mortality factor 4 like 1##AK098485|MORF4L1|10933|mortality factor 4 like 1##AF218011|MORF4L1|10933|mortality factor 4 like 1##AF100615|MORF4L1|10933|mortality factor 4 like 1##AY148481|MORF4L1|10933|mortality factor 4 like 1##AK296650|MORF4L1|10933|mortality factor 4 like 1##BC002936|MORF4L1|10933|mortality factor 4 like 1##BC022845|MORF4L1|10933|mortality factor 4 like 1##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1	1.395911	0.0	denovo_WM_7:21:0.276	denovo_WM_7:37:0.281
chr2	152146361	152146507	reg1004472.p2	7.543	+	U32849 AK124323 TSC_hg19_v1_chr2_-_152146429 AK291548 AK298754 NM_004688	-31	-	TSC_hg19_v1_chr2_-_152146171 BC001268	-282	-	TSC_hg19_v1_chr2_-_152118378 BC136410 BC136411 AK127552 NM_198557	-28101	-	NM_007115 M31165 BC030205 AB590644 AJ419936 AJ421518 CU688838 AF086484	67745	+	TSC_hg19_v1_chr2_+_152266419 AY727910 AY727913 NM_001177663 NM_018151 AY727911 NM_001177664 AK299572 AK299291 BX648324 AY585745 CR933663	119996	+	AY727912 NM_001177665 TSC_hg19_v1_chr2_+_152266674	120204	+	U32849|NMI|9111|N-myc (and STAT) interactor##AK124323|NMI|9111|N-myc (and STAT) interactor##AK291548|NMI|9111|N-myc (and STAT) interactor##AK298754|NMI|9111|N-myc (and STAT) interactor##NM_004688|NMI|9111|N-myc (and STAT) interactor##BC001268|NMI|9111|N-myc (and STAT) interactor##BC136410|RBM43|375287|RNA binding motif protein 43##BC136411|RBM43|375287|RNA binding motif protein 43##AK127552|RBM43|375287|RNA binding motif protein 43##NM_198557|RBM43|375287|RNA binding motif protein 43##NM_007115|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##M31165|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##BC030205|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AJ419936|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AJ421518|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AF086484|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AY727910|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727913|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177663|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_018151|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727911|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177664|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK299572|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK299291|RIF1|55183|RAP1 interacting factor homolog (yeast)##BX648324|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY585745|RIF1|55183|RAP1 interacting factor homolog (yeast)##CR933663|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727912|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177665|RIF1|55183|RAP1 interacting factor homolog (yeast)	0.415943	0.0	denovo_WM_7:-106:0.262
chr5	75133429	75133571	reg1004683.p1	7.543	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-120240	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	-125238	-	NM_001130105	-325695	-	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	245771	+	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	565616	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	785645	-	BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001130105|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2	0.959338	0.0	denovo_WM_7:5:0.363	denovo_WM_7:8:0.596
chr20	2865368	2865484	reg1003762.p2	7.542	+	TSC_hg19_v1_chr20_+_2854126 NM_080840 AK294990 AK297293 BX571753 AB209702 AK290233 AK294499 BC027308 X54890	-11181	+	BC126431 M34668 NM_002836 BC064406	-20643	+	BC014247 AK026029 TSC_hg19_v1_chr20_-_2821811	-43626	-	NM_080841 X53364 TSC_hg19_v1_chr20_+_2903902	38455	+	TSC_hg19_v1_chr20_+_2944935 CU693258 DQ891155 DQ894334	79500	+	AF036330 NM_001501 NM_178331 NM_178332 BC069362 BC115399 BC115400	158841	+	NM_080840|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK294990|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK297293|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BX571753|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AB209702|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK290233|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AK294499|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC027308|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##X54890|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC126431|VPS16|64601|vacuolar protein sorting 16 homolog (S. cerevisiae)##M34668|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##NM_002836|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##BC064406|VPS16|64601|vacuolar protein sorting 16 homolog (S. cerevisiae)##BC014247|FAM113A|64773|family with sequence similarity 113, member A##AK026029|FAM113A|64773|family with sequence similarity 113, member A##NM_080841|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##X53364|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##DQ891155|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##DQ894334|PTPRA|5786|protein tyrosine phosphatase, receptor type, A##AF036330|GNRH2|2797|gonadotropin-releasing hormone 2##NM_001501|GNRH2|2797|gonadotropin-releasing hormone 2##NM_178331|GNRH2|2797|gonadotropin-releasing hormone 2##NM_178332|GNRH2|2797|gonadotropin-releasing hormone 2##BC069362|GNRH2|2797|gonadotropin-releasing hormone 2##BC115399|GNRH2|2797|gonadotropin-releasing hormone 2##BC115400|GNRH2|2797|gonadotropin-releasing hormone 2	1.967783	0.0	denovo_WM_7:22:0.333	denovo_WM_7:23:0.326	denovo_WM_7:24:0.328	denovo_WM_7:40:0.969
chr11	102791020	102791200	reg1003423.p2	7.541	+	AB590529 HQ258263 L23808 AK313959 BC112301 BC143773 NM_002426	-45396	-	DQ399598 CU686970 J03209 X05232 BC074815 BC074869 BC105954 BC107490 BC107491 AK313310 AK223283 AK223291 TSC_hg19_v1_chr11_-_102714339 BC069676 BC069716 NM_002422	-76814	-	TSC_hg19_v1_chr11_-_102668892 NM_001145938 NM_002421	-122182	-	AY256443 AY256444 HQ258010 X75308 BC067522 BC067523 BC074807 BC074808 AK315341 X81334 AK222748 AK292211 NM_002427	35337	-	AY364246 BC021074 TSC_hg19_v1_chr11_-_102962883 AK056993 BC004169	171631	-	TSC_hg19_v1_chr11_-_102962907 AK298227 NM_032299	171813	-	HQ258263|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##L23808|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##AK313959|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##BC112301|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##BC143773|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##NM_002426|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##DQ399598|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##J03209|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##X05232|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC074815|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC074869|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC105954|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC107490|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC107491|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##AK313310|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##AK223283|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##AK223291|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC069676|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC069716|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##NM_002422|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##NM_001145938|MMP1|4312|matrix metallopeptidase 1 (interstitial collagenase)##NM_002421|MMP1|4312|matrix metallopeptidase 1 (interstitial collagenase)##AY256443|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AY256444|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##HQ258010|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##X75308|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC067522|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC067523|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC074807|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC074808|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AK315341|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##X81334|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AK222748|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AK292211|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##NM_002427|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AY364246|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC021074|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AK056993|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC004169|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AK298227|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##NM_032299|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	0.279475	0.0	
chr6	135898178	135898327	reg1004043.p1	7.541	+	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	-79288	+	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	-79367	-	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	-79427	-	AK290582 AB038040 NM_018945 TSC_hg19_v1_chr6_+_136172838 AJ251860 BC070267	274599	+	TSC_hg19_v1_chr6_-_136571414 AK292303 BC063688 AK125758 NM_001099286 NM_138419	673177	-	BC078160 BC063846 TSC_hg19_v1_chr6_-_136610926 BX649160 BC016682	712658	-	BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1##AK290582|PDE7B|27115|phosphodiesterase 7B##AB038040|PDE7B|27115|phosphodiesterase 7B##NM_018945|PDE7B|27115|phosphodiesterase 7B##AJ251860|PDE7B|27115|phosphodiesterase 7B##BC070267|PDE7B|27115|phosphodiesterase 7B##AK292303|FAM54A|113115|family with sequence similarity 54, member A##BC063688|FAM54A|113115|family with sequence similarity 54, member A##AK125758|FAM54A|113115|family with sequence similarity 54, member A##NM_001099286|FAM54A|113115|family with sequence similarity 54, member A##NM_138419|FAM54A|113115|family with sequence similarity 54, member A##BC078160|BCLAF1|9774|BCL2-associated transcription factor 1##BC063846|BCLAF1|9774|BCL2-associated transcription factor 1##BX649160|BCLAF1|9774|BCL2-associated transcription factor 1##BC016682|BCLAF1|9774|BCL2-associated transcription factor 1	1.972247	0.0	denovo_WM_7:-11:0.241	denovo_WM_7:-13:0.633	denovo_WM_7:-48:0.780
chr15	52796159	52796302	reg1004447.p1	7.540	+	AF272390 BC144611 BC064841 TSC_hg19_v1_chr15_-_52587968 AK301079 AK304136 NM_018728	-208296	-	AF161352 TSC_hg19_v1_chr15_-_52529707	-266524	-	NM_016194	-312666	-	TSC_hg19_v1_chr15_-_52821078 AB290180 AK303660 AK307600 NM_000259 NM_001142495 U90942 Y07759	25026	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	64829	-	TSC_hg19_v1_chr15_-_52861228 AF084555 BC003418 NM_006628	65002	-	AF272390|MYO5C|55930|myosin VC##BC144611|MYO5C|55930|myosin VC##BC064841|MYO5C|55930|myosin VC##AK301079|MYO5C|55930|myosin VC##AK304136|MYO5C|55930|myosin VC##NM_018728|MYO5C|55930|myosin VC##AF161352|MYO5C|55930|myosin VC##NM_016194|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AB290180|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK303660|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK307600|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_000259|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_001142495|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##U90942|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##Y07759|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AF084555|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC003418|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##NM_006628|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa	0.992081	0.0	
chr6	7073889	7074069	reg1000489.p1	7.540	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-348818	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-485029	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-753069	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	33847	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	34056	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	34244	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	2.184758	0.0	denovo_WM_7:-67:0.652	denovo_WM_7:-86:0.508	denovo_WM_7:96:0.316
chr9	108167845	108167976	reg1005059.p1	7.540	+	TSC_hg19_v1_chr9_+_108006993 AJ420812 BC049203 AB528737	-160843	+	TSC_hg19_v1_chr9_+_108006937 AJ272365	-160959	+	TSC_hg19_v1_chr9_+_108006931 NM_080546	-160997	+	AK309817 TSC_hg19_v1_chr9_+_108210342 NM_001145313 NM_031919 NM_207647 AF088031 AK299350 AK296433 AK299491 AF316830	42353	+	TSC_hg19_v1_chr9_+_108320420 NM_001079802 NM_001198963 NM_006731 AK300840 AK304460 BC058842 AB008226 AB609007	152513	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	256847	+	AJ420812|SLC44A1|23446|solute carrier family 44, member 1##BC049203|SLC44A1|23446|solute carrier family 44, member 1##AJ272365|SLC44A1|23446|solute carrier family 44, member 1##NM_080546|SLC44A1|23446|solute carrier family 44, member 1##AK309817|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_001145313|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_031919|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_207647|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AF088031|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK299350|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK296433|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK299491|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AF316830|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_001079802|FKTN|2218|fukutin##NM_001198963|FKTN|2218|fukutin##NM_006731|FKTN|2218|fukutin##AK300840|FKTN|2218|fukutin##AK304460|FKTN|2218|fukutin##BC058842|FKTN|2218|fukutin##AB008226|FKTN|2218|fukutin##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2	0.0	0.0	
chr17	30239892	30239987	reg1004449.p2	7.539	+	TSC_hg19_v1_chr17_-_30228769 AK299806	-11175	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	-11208	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	-11273	-	TSC_hg19_v1_chr17_+_30264046 NM_015355	24104	+	TSC_hg19_v1_chr17_+_30264057 AK290014	24118	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	24136	+	AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)	1.966106	0.44293	CTCF.p2:-9:0.443	denovo_WM_7:45:0.501	denovo_WM_7:46:0.468	denovo_WM_7:60:0.479	denovo_WM_7:61:0.506
chr6	6332554	6332681	reg1003916.p1	7.539	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-11707	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	-11732	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	-324920	-	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	256333	+	BC039678 TSC_hg19_v1_chr6_+_6725205	392544	+	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	775209	+	NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1	0.98396	0.0	denovo_WM_7:-45:0.204	denovo_WM_7:-46:0.780
chr7	151630462	151630582	reg1004326.p1	7.538	+	AK074675 NM_016203	-56260	-	BC068598 TSC_hg19_v1_chr7_-_151511929 NM_001040633	-118582	-	TSC_hg19_v1_chr7_-_151329284 BT007127 BC020540 AB025580 AF087875 AK314646 AK001887 NM_024429	-301242	-	NM_145292 AF440404 AK315667 AK093091 AX747915 BC022021 AF440400 BC025391	22976	+	TSC_hg19_v1_chr7_+_151722782 NM_022087	92275	+	TSC_hg19_v1_chr7_+_151722826 AK298911	92310	+	AK074675|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_016203|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC068598|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_001040633|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BT007127|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC020540|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AB025580|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AF087875|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK314646|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK001887|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_024429|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_145292|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AF440404|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AK315667|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AK093091|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##BC022021|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AF440400|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##BC025391|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##NM_022087|GALNT11|63917|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)##AK298911|GALNT11|63917|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	0.999721	0.290044	CTCF.p2:11:0.241	denovo_WM_7:53:0.721
chr9	119713646	119713792	reg1004516.p1	7.538	+	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	-264113	+	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	-264257	-	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	-797649	+	TSC_hg19_v1_chr9_-_120177318 AB014534 BC146756 NM_014010	463594	-	TSC_hg19_v1_chr9_-_120177336 BX649176	463615	-	TSC_hg19_v1_chr9_+_120466459 NM_138554 AK290053	752745	+	NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##AB014534|ASTN2|23245|astrotactin 2##BC146756|ASTN2|23245|astrotactin 2##NM_014010|ASTN2|23245|astrotactin 2##BX649176|ASTN2|23245|astrotactin 2##NM_138554|TLR4|7099|toll-like receptor 4##AK290053|TLR4|7099|toll-like receptor 4	1.992967	0.0	denovo_WM_7:-78:0.250	denovo_WM_7:-79:0.675	denovo_WM_7:-94:0.822
chr3	5098608	5098736	reg1006123.p1	7.537	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-77318	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	-77491	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	-77556	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	65283	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	65419	+	TSC_hg19_v1_chr3_+_5229344 AK298511	130655	+	AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	2.858921	0.0	denovo_WM_7:-27:0.305	denovo_WM_7:-29:0.417	denovo_WM_7:-44:0.796	denovo_WM_7:-59:0.850
chr19	17237371	17237498	reg1004107.p2	7.536	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-50841	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-51113	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-99894	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	88738	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	88771	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	99600	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	1.423775	0.0	denovo_WM_7:34:0.431	denovo_WM_7:50:0.794
chr14	103544769	103544929	reg1004485.p1	7.535	+	BC047871 BC048261 TSC_hg19_v1_chr14_-_103523736 AB032950 BC155541 NM_006035 BC078666 AF128625	-21112	-	AB384568 TSC_hg19_v1_chr14_-_103523568	-21308	-	TSC_hg19_v1_chr14_-_103430941 BX248752	-113891	-	BC113655 BC117375 NM_001077594 HQ258590	21669	+	TSC_hg19_v1_chr14_+_103589771 BC017818	44896	+	M92357 NM_006291 BC128449 BC128450 TSC_hg19_v1_chr14_+_103592873	47919	+	BC047871|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC048261|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##AB032950|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC155541|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##NM_006035|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##AF128625|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC113655|EXOC3L4|91828|exocyst complex component 3-like 4##BC117375|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001077594|EXOC3L4|91828|exocyst complex component 3-like 4##HQ258590|EXOC3L4|91828|exocyst complex component 3-like 4##BC017818|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##M92357|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_006291|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128449|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128450|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2	0.993414	0.973538	CTCF.p2:-60:0.974
chr16	30645455	30645630	reg1004672.p1	7.535	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-23886	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-48567	-	NM_001024683 NM_145271	-61815	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	16558	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	16723	+	NM_001105079	30235	+	AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##NM_001105079|FBRS|64319|fibrosin	0.99897	0.0	denovo_WM_7:-41:0.314	denovo_WM_7:-42:0.314	denovo_WM_7:-43:0.314
chr2	60780629	60780773	reg1003653.p2	7.534	+	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	-179	-	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	-2312219	-	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	-2506713	+	AF080216 TSC_hg19_v1_chr2_-_60780784	77	-	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	202783	+	TSC_hg19_v1_chr2_+_61108702 AK303926	328004	+	AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)	1.977466	0.0	
chr12	92550879	92551050	reg1004659.p1	7.533	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-11321	-	NM_001920	-974159	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-974384	-	AJ845165 AJ845166 NM_001025233	266770	+	AJ845168 NM_001025232	270959	-	NM_001037671 NM_001178097	545654	+	BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74	2.008393	0.0	denovo_WM_7:22:0.473	denovo_WM_7:23:0.318	denovo_WM_7:-45:0.341	denovo_WM_7:-47:0.584
chr5	77175285	77175465	reg1002872.p2	7.532	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-103243	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-240861	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-240946	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	415050	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	415102	-	TSC_hg19_v1_chr5_-_77590495 U81504	415117	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.995874	0.0	
chr10	52384174	52384324	reg1004534.p1	7.531	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	-546	-	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-375909	-	NM_018232	-546364	+	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	115461	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	261144	-	TSC_hg19_v1_chr10_-_52645440 BC054873 AK000324 NM_001198818 NM_001198819 NM_001198820 NM_014576 NM_138932 NM_138933	261186	-	AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor##BC054873|A1CF|29974|APOBEC1 complementation factor##AK000324|A1CF|29974|APOBEC1 complementation factor##NM_001198818|A1CF|29974|APOBEC1 complementation factor##NM_001198819|A1CF|29974|APOBEC1 complementation factor##NM_001198820|A1CF|29974|APOBEC1 complementation factor##NM_014576|A1CF|29974|APOBEC1 complementation factor##NM_138932|A1CF|29974|APOBEC1 complementation factor##NM_138933|A1CF|29974|APOBEC1 complementation factor	0.384243	0.0	denovo_WM_7:8:0.384
chr7	77330534	77330632	reg1003094.p2	7.531	+	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	-4826	+	TSC_hg19_v1_chr7_-_77325573 BC037783	-5022	-	AK303602 NM_001131008 NM_001131009 AK296764	-163215	+	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	97085	-	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	97164	-	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	97558	+	NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##AK303602|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131009|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK296764|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2	1.297615	0.0	
chr22	50318770	50318909	reg1005003.p1	7.530	+	TSC_hg19_v1_chr22_+_50312337 BC050675 DQ470678 AK225930 AY358355 BC002894 DQ470676 DQ470677 DQ470680 AJ968414	-6464	+	TSC_hg19_v1_chr22_+_50312328 DQ470679 NM_001135101 NM_024324 AK308692 AK308535	-6535	+	TSC_hg19_v1_chr22_-_50312107 NM_024105	-6732	-	TSC_hg19_v1_chr22_+_50354140 NM_001001852 AB114795	35310	+	TSC_hg19_v1_chr22_+_50354433 AK292005 BC141855 BC052239 AB528933 BC140030	35672	+	NM_001001694 AK123987	132231	-	BC050675|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470678|CRELD2|79174|cysteine-rich with EGF-like domains 2##AK225930|CRELD2|79174|cysteine-rich with EGF-like domains 2##AY358355|CRELD2|79174|cysteine-rich with EGF-like domains 2##BC002894|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470676|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470677|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470680|CRELD2|79174|cysteine-rich with EGF-like domains 2##AJ968414|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470679|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_001135101|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_024324|CRELD2|79174|cysteine-rich with EGF-like domains 2##AK308535|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_024105|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##NM_001001852|PIM3|415116|pim-3 oncogene##AB114795|PIM3|415116|pim-3 oncogene##AK292005|PIM3|415116|pim-3 oncogene##BC141855|PIM3|415116|pim-3 oncogene##BC052239|PIM3|415116|pim-3 oncogene##BC140030|PIM3|415116|pim-3 oncogene##NM_001001694|IL17REL|400935|interleukin 17 receptor E-like##AK123987|IL17REL|400935|interleukin 17 receptor E-like	0.995529	0.11152	denovo_WM_7:-51:0.455	denovo_WM_7:-52:0.455
chr3	185313481	185313624	reg1002653.p1	7.530	+	AK304402 TSC_hg19_v1_chr3_+_185304106 AF151697 NM_021627 AK296772 AK027599 AK296744 BC040609 CU691906 AB037752 AB385449 AL834380	-9469	+	CU687970 TSC_hg19_v1_chr3_-_185270374 AK298380 AY036912 AY093498 EF186228 EF186229 BC064941 AK122651 NM_139248	-43224	-	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	-96853	-	CU676908 DQ892161 EU176689 TSC_hg19_v1_chr3_-_185542803 AK309611 AF117107 BC012322	229222	-	TSC_hg19_v1_chr3_-_185542828 BC021290 AK290664 NM_001007225 NM_006548	229279	-	AK091863 TSC_hg19_v1_chr3_-_185641735	328113	-	AK304402|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AF151697|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##NM_021627|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296772|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK027599|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296744|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##BC040609|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AL834380|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK298380|LIPH|200879|lipase, member H##AY036912|LIPH|200879|lipase, member H##AY093498|LIPH|200879|lipase, member H##EF186228|LIPH|200879|lipase, member H##EF186229|LIPH|200879|lipase, member H##BC064941|LIPH|200879|lipase, member H##AK122651|LIPH|200879|lipase, member H##NM_139248|LIPH|200879|lipase, member H##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A##DQ892161|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##EU176689|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK309611|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AF117107|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##BC021290|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK290664|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##NM_001007225|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##NM_006548|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK091863|TRA2B|6434|transformer 2 beta homolog (Drosophila)	1.011672	0.0	
chr5	124083176	124083292	reg1003925.p1	7.530	+	BC131507 AB033107 BC151226 NM_020747	-2446	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1235352	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1324090	-	NM_001146319 AK316288 AK300154	1612580	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1675609	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1675953	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.893789	0.0	denovo_WM_7:40:0.419	denovo_WM_7:41:0.475
chr19	2467092	2467221	reg1005299.p1	7.529	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-10196	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-10220	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	-10266	-	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	9082	+	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	235539	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	235586	-	NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2##NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7	1.974316	0.0	denovo_WM_7:-5:0.200	denovo_WM_7:11:0.457
chr3	107409591	107409769	reg1004064.p2	7.528	+	NM_001142568 NM_020235 AF283775 AF454941 TSC_hg19_v1_chr3_+_107241834 AF161457 AK314434 AK057010 AK291757 AF276949 BC131718	-167831	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	-313370	+	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	-450088	+	AB590342 BT006907 DQ890756 DQ891811 DQ893920 TSC_hg19_v1_chr3_-_107809906 BC010016 BC012884 X69398 BC037306 AK289813 Z25521 NM_001777 NM_198793	400193	-	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	531612	-	AK315109 AK296644 TSC_hg19_v1_chr3_+_108015400 AK000692	605721	+	NM_001142568|BBX|56987|bobby sox homolog (Drosophila)##NM_020235|BBX|56987|bobby sox homolog (Drosophila)##AF283775|BBX|56987|bobby sox homolog (Drosophila)##AF454941|BBX|56987|bobby sox homolog (Drosophila)##AF161457|BBX|56987|bobby sox homolog (Drosophila)##AK314434|BBX|56987|bobby sox homolog (Drosophila)##AK057010|BBX|56987|bobby sox homolog (Drosophila)##AK291757|BBX|56987|bobby sox homolog (Drosophila)##AF276949|BBX|56987|bobby sox homolog (Drosophila)##BC131718|BBX|56987|bobby sox homolog (Drosophila)##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##BT006907|CD47|961|CD47 molecule##DQ890756|CD47|961|CD47 molecule##DQ891811|CD47|961|CD47 molecule##DQ893920|CD47|961|CD47 molecule##BC010016|CD47|961|CD47 molecule##BC012884|CD47|961|CD47 molecule##X69398|CD47|961|CD47 molecule##BC037306|CD47|961|CD47 molecule##AK289813|CD47|961|CD47 molecule##Z25521|CD47|961|CD47 molecule##NM_001777|CD47|961|CD47 molecule##NM_198793|CD47|961|CD47 molecule##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK315109|HHLA2|11148|HERV-H LTR-associating 2##AK296644|HHLA2|11148|HERV-H LTR-associating 2##AK000692|HHLA2|11148|HERV-H LTR-associating 2	0.999118	0.0	
chr9	125996456	125996636	reg1002356.p1	7.527	+	TSC_hg19_v1_chr9_-_125941308 BC002693	-55226	-	TSC_hg19_v1_chr9_-_125874882 AK025814	-121647	-	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-199701	+	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	34274	-	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	34342	-	NM_173689 AK123000 DQ426866 AY720432	121947	+	BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)	1.979108	0.0	denovo_WM_7:74:0.297	denovo_WM_7:76:0.298
chr1	157536591	157536736	reg1004943.p2	7.526	+	AF397453 BC101066 BC101067 BC101068 BC101069 AF343662 AF343663 AF343664 AF343665 AK301356 AL834187 AY358085 AK311561 AK300010 AF369794 NM_001195388 NM_031281	-14433	-	TSC_hg19_v1_chr1_-_157108169 BC022868 NM_005240 AK304789 AK316274 NM_001145312	-428380	-	TSC_hg19_v1_chr1_-_157108158 L16464	-428513	-	AF329490 AF397452 BC143628 BC125173 BC125174 AF343659 AF343660 AF343661 NM_031282	31138	-	DQ892459 DQ895672 AY043466 AF416901 AF416902 AF416903 AF416904 AF416905 BC028933 BC013698 AK301257 AF459027 NM_052939 AK098122	133864	-	CU686705 AK301113 AY043465 AF459633 AY358130 AK303549 BC069185 NM_030764	210229	-	AF397453|FCRL5|83416|Fc receptor-like 5##BC101066|FCRL5|83416|Fc receptor-like 5##BC101067|FCRL5|83416|Fc receptor-like 5##BC101068|FCRL5|83416|Fc receptor-like 5##BC101069|FCRL5|83416|Fc receptor-like 5##AF343662|FCRL5|83416|Fc receptor-like 5##AF343663|FCRL5|83416|Fc receptor-like 5##AF343664|FCRL5|83416|Fc receptor-like 5##AF343665|FCRL5|83416|Fc receptor-like 5##AK301356|FCRL5|83416|Fc receptor-like 5##AL834187|FCRL5|83416|Fc receptor-like 5##AY358085|FCRL5|83416|Fc receptor-like 5##AK300010|FCRL5|83416|Fc receptor-like 5##AF369794|FCRL5|83416|Fc receptor-like 5##NM_001195388|FCRL5|83416|Fc receptor-like 5##NM_031281|FCRL5|83416|Fc receptor-like 5##BC022868|ETV3|2117|ets variant 3##NM_005240|ETV3|2117|ets variant 3##AK304789|ETV3|2117|ets variant 3##AK316274|ETV3|2117|ets variant 3##NM_001145312|ETV3|2117|ets variant 3##L16464|ETV3|2117|ets variant 3##AF329490|FCRL4|83417|Fc receptor-like 4##AF397452|FCRL4|83417|Fc receptor-like 4##BC143628|FCRL4|83417|Fc receptor-like 4##BC125173|FCRL4|83417|Fc receptor-like 4##BC125174|FCRL4|83417|Fc receptor-like 4##AF343659|FCRL4|83417|Fc receptor-like 4##AF343660|FCRL4|83417|Fc receptor-like 4##AF343661|FCRL4|83417|Fc receptor-like 4##NM_031282|FCRL4|83417|Fc receptor-like 4##DQ892459|FCRL3|115352|Fc receptor-like 3##DQ895672|FCRL3|115352|Fc receptor-like 3##AY043466|FCRL3|115352|Fc receptor-like 3##AF416901|FCRL3|115352|Fc receptor-like 3##AF416902|FCRL3|115352|Fc receptor-like 3##AF416903|FCRL3|115352|Fc receptor-like 3##AF416904|FCRL3|115352|Fc receptor-like 3##AF416905|FCRL3|115352|Fc receptor-like 3##BC028933|FCRL3|115352|Fc receptor-like 3##BC013698|FCRL3|115352|Fc receptor-like 3##AK301257|FCRL3|115352|Fc receptor-like 3##AF459027|FCRL3|115352|Fc receptor-like 3##NM_052939|FCRL3|115352|Fc receptor-like 3##AK098122|FCRL3|115352|Fc receptor-like 3##AK301113|FCRL2|79368|Fc receptor-like 2##AY043465|FCRL2|79368|Fc receptor-like 2##AF459633|FCRL2|79368|Fc receptor-like 2##AY358130|FCRL2|79368|Fc receptor-like 2##AK303549|FCRL2|79368|Fc receptor-like 2##BC069185|FCRL2|79368|Fc receptor-like 2##NM_030764|FCRL2|79368|Fc receptor-like 2	0.977423	0.0	denovo_WM_7:27:0.810
chr17	12892407	12892513	reg1003700.p1	7.526	+	TSC_hg19_v1_chr17_+_12692837 NM_014859 AB014572	-199643	+	AK097821 NM_001146313	-268855	+	TSC_hg19_v1_chr17_+_12569389 BC126307 BC143391 AF532596	-323026	+	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	28816	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	28859	-	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	28896	-	NM_014859|ARHGAP44|9912|Rho GTPase activating protein 44##AB014572|ARHGAP44|9912|Rho GTPase activating protein 44##AK097821|MYOCD|93649|myocardin##NM_001146313|MYOCD|93649|myocardin##BC126307|MYOCD|93649|myocardin##BC143391|MYOCD|93649|myocardin##AF532596|MYOCD|93649|myocardin##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)	0.998423	0.0	
chr1	206718204	206718337	reg1004766.p1	7.524	+	TSC_hg19_v1_chr1_+_206680863 AK291268 AY062002 AY062003 BC004270 BC007203 NM_182663 NM_182664 AB209145 DQ892961 DQ896208	-37369	+	TSC_hg19_v1_chr1_+_206680860 AK289861	-37409	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	-74425	+	TSC_hg19_v1_chr1_+_206730491 NM_182665 AF445801	12205	+	TSC_hg19_v1_chr1_+_206730542 BC042651 AY216268	12250	+	AL832784 AY261332 AK292039 TSC_hg19_v1_chr1_+_206730613	12338	+	AK291268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062002|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062003|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC004270|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC007203|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182663|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182664|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AB209145|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ892961|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ896208|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK289861|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_182665|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AF445801|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC042651|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY216268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AL832784|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY261332|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK292039|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5	0.993792	0.114816	denovo_WM_7:-40:0.400	denovo_WM_7:-41:0.594
chr19	48226892	48227040	reg1004143.p2	7.522	+	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	-10316	+	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	-115522	+	NM_001101419	-167854	-	NM_015710 TSC_hg19_v1_chr19_+_48248797	21828	+	TSC_hg19_v1_chr19_+_48248802 AK303180 AK297877 AK303918 AK309788 AK301117 AF182076 BC006311 BC013203 AY535000 CU679611 DQ892724 DQ895973 AK024486 BC013235 BC013307 BC014009 BC039869 BC007248 BC004229 AF296124 AL359336 AL359335	21869	+	NM_003009 TSC_hg19_v1_chr19_+_48281965 BC039597 BC032546 BC047893 BC000581 U67171 AF015283	54960	+	NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2##BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_001101419|ZNF541|84215|zinc finger protein 541##NM_015710|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK297877|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK303918|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK309788|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK301117|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AF182076|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC006311|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013203|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AY535000|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##DQ892724|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##DQ895973|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK024486|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013235|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013307|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC014009|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC039869|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC007248|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC004229|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AF296124|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AL359336|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AL359335|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##NM_003009|SEPW1|6415|selenoprotein W, 1##BC039597|SEPW1|6415|selenoprotein W, 1##BC032546|SEPW1|6415|selenoprotein W, 1##BC047893|SEPW1|6415|selenoprotein W, 1##BC000581|SEPW1|6415|selenoprotein W, 1##U67171|SEPW1|6415|selenoprotein W, 1##AF015283|SEPW1|6415|selenoprotein W, 1	1.132921	0.0	
chr22	24141575	24141755	reg1002476.p2	7.522	+	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	-12416	+	AK075448 AK129792 NM_005940 X57766 BC057788	-26620	+	TSC_hg19_v1_chr22_-_24110129 BC053570 AK289560 BC065232 NM_213720	-31553	-	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	39520	-	AF443201 AJ271290 NM_001024938 NM_030807 AK314502 AK315937 AK075467 AK296169 AK308602 BC063525 BC100807 BC100808 BC100809 BC100810 AK300196 TSC_hg19_v1_chr22_+_24199338	57533	+	NM_001024939 TSC_hg19_v1_chr22_+_24200061 AK304409 AK308589 AK316049 CR456373 AB463269 CU013078 CU013366	58448	+	AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC053570|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK289560|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##BC065232|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##NM_213720|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3##AF443201|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AJ271290|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024938|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_030807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK314502|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK315937|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK075467|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK296169|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308602|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC063525|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100808|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100809|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100810|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK300196|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024939|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK304409|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308589|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK316049|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CR456373|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013078|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013366|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11	0.994803	0.0	denovo_WM_7:42:0.332	denovo_WM_7:43:0.332	denovo_WM_7:44:0.332
chr15	40850420	40850599	reg1004964.p1	7.520	+	NM_130468 AB066595 BC049214 TSC_hg19_v1_chr15_+_40763222 BC053633 AF282905 AK074739 CU690606 AF401222 AY358446 BC023653	-87167	+	TSC_hg19_v1_chr15_+_40733353 BC022782 NM_014952	-117146	+	TSC_hg19_v1_chr15_+_40698024 AK315296 BT007145 DQ892577 DQ895793	-152461	+	AK092214 AX747411 AL832032 AK098781 TSC_hg19_v1_chr15_-_40857211	6693	-	TSC_hg19_v1_chr15_-_40857235 AK312842 AK293079 NM_001080791 NM_001080792 NM_052849	6731	-	TSC_hg19_v1_chr15_+_40861497 AK301383	10989	+	NM_130468|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AB066595|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC049214|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC053633|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF282905|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AK074739|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF401222|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AY358446|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC023653|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC022782|BAHD1|22893|bromo adjacent homology domain containing 1##NM_014952|BAHD1|22893|bromo adjacent homology domain containing 1##AK315296|IVD|3712|isovaleryl-CoA dehydrogenase##BT007145|IVD|3712|isovaleryl-CoA dehydrogenase##DQ892577|IVD|3712|isovaleryl-CoA dehydrogenase##DQ895793|IVD|3712|isovaleryl-CoA dehydrogenase##AK092214|C15orf57|90416|chromosome 15 open reading frame 57##AL832032|C15orf57|90416|chromosome 15 open reading frame 57##AK098781|C15orf57|90416|chromosome 15 open reading frame 57##AK312842|C15orf57|90416|chromosome 15 open reading frame 57##AK293079|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080791|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080792|C15orf57|90416|chromosome 15 open reading frame 57##NM_052849|C15orf57|90416|chromosome 15 open reading frame 57##AK301383|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2	0.0	0.0	
chr4	39972349	39972529	reg1004840.p2	7.519	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-272635	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-331883	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-442813	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	6899	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	7154	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	86093	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	1.01975	0.0	
chr8	94896941	94897103	reg1005321.p1	7.519	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-129908	+	TSC_hg19_v1_chr8_-_94753214 NM_203390	-143795	-	BC039260 TSC_hg19_v1_chr8_-_94753192	-143831	-	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	32158	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	33013	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	323772	-	AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##NM_203390|RBM12B|389677|RNA binding motif protein 12B##BC039260|RBM12B|389677|RNA binding motif protein 12B##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)	0.534921	0.0	denovo_WM_7:4:0.280	denovo_WM_7:5:0.233
chr13	24420017	24420162	reg1004836.p1	7.518	+	TSC_hg19_v1_chr13_+_24153521 BC035796 NM_001204458 NM_018647 AY358888 AF167555	-266557	+	TSC_hg19_v1_chr13_+_24144402 NM_001204459 NM_148957	-275634	+	TSC_hg19_v1_chr13_-_24007842 NM_014363	-412249	-	TSC_hg19_v1_chr13_+_24463019 BC015452 BC073902 NM_001014442	42927	+	TSC_hg19_v1_chr13_-_24463540 DQ893610 DQ896839 AK291923 U80034 AK225290 AK308908 BC009934 NM_005932	43425	-	NM_001135816 BC142999	43503	+	BC035796|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204458|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_018647|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AY358888|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AF167555|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204459|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_148957|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##BC015452|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC073902|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##NM_001014442|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##DQ893610|MIPEP|4285|mitochondrial intermediate peptidase##DQ896839|MIPEP|4285|mitochondrial intermediate peptidase##AK291923|MIPEP|4285|mitochondrial intermediate peptidase##U80034|MIPEP|4285|mitochondrial intermediate peptidase##AK225290|MIPEP|4285|mitochondrial intermediate peptidase##AK308908|MIPEP|4285|mitochondrial intermediate peptidase##BC009934|MIPEP|4285|mitochondrial intermediate peptidase##NM_005932|MIPEP|4285|mitochondrial intermediate peptidase##NM_001135816|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC142999|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)	0.993539	0.064176	denovo_WM_7:-20:0.881
chr14	77509723	77509862	reg1004506.p1	7.518	+	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-14732	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-15108	-	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-216997	+	AK124327 TSC_hg19_v1_chr14_-_77542533	32741	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	54853	+	BC117676 TSC_hg19_v1_chr14_-_77608072	98223	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.99326	0.0	denovo_WM_7:-21:0.479	denovo_WM_7:-22:0.479
chr11	64926512	64926690	reg1004334.p1	7.517	+	TSC_hg19_v1_chr11_-_64902005 AK126912 AL834262 NM_032431 NM_172230	-24597	-	BC030530 TSC_hg19_v1_chr11_-_64901988 AB058713 AK074148	-24633	-	TSC_hg19_v1_chr11_+_64889802 U39400 BC004378 AB062395	-36793	+	BC137244 BC137246 BC144548 AY820305 NM_001008778	11064	+	NM_001198868 AK315556 TSC_hg19_v1_chr11_+_64948825	22215	+	NM_001198869 TSC_hg19_v1_chr11_+_64949220 BC075862	22596	+	AK126912|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##AL834262|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##NM_032431|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##NM_172230|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##BC030530|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##AB058713|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##AK074148|SYVN1|84447|synovial apoptosis inhibitor 1, synoviolin##U39400|MRPL49|740|mitochondrial ribosomal protein L49##BC004378|MRPL49|740|mitochondrial ribosomal protein L49##AB062395|MRPL49|740|mitochondrial ribosomal protein L49##BC137244|SPDYC|387778|speedy homolog C (Xenopus laevis)##BC137246|SPDYC|387778|speedy homolog C (Xenopus laevis)##BC144548|SPDYC|387778|speedy homolog C (Xenopus laevis)##AY820305|SPDYC|387778|speedy homolog C (Xenopus laevis)##NM_001008778|SPDYC|387778|speedy homolog C (Xenopus laevis)##NM_001198868|CAPN1|823|calpain 1, (mu/I) large subunit##AK315556|CAPN1|823|calpain 1, (mu/I) large subunit##NM_001198869|CAPN1|823|calpain 1, (mu/I) large subunit##BC075862|CAPN1|823|calpain 1, (mu/I) large subunit	0.993703	0.0	denovo_WM_7:-15:0.341	denovo_WM_7:-21:0.333
chr15	77003815	77003969	reg1003843.p1	7.515	+	TSC_hg19_v1_chr15_+_76629141 AB593133 AK001022 BC012136 NM_145805 BC011967 EU446846	-374730	+	TSC_hg19_v1_chr15_-_76603808 AK292979 NM_000126 NM_001127716	-400078	-	TSC_hg19_v1_chr15_-_76603791 BC029995	-400095	-	BX647285 NM_001145923	150392	-	AF242528 NM_020843	172311	-	TSC_hg19_v1_chr15_-_77197682 BC070197 BC107415 AK056515	193772	-	AB593133|ISL2|64843|ISL LIM homeobox 2##AK001022|ISL2|64843|ISL LIM homeobox 2##BC012136|ISL2|64843|ISL LIM homeobox 2##NM_145805|ISL2|64843|ISL LIM homeobox 2##BC011967|ISL2|64843|ISL LIM homeobox 2##EU446846|ISL2|64843|ISL LIM homeobox 2##AK292979|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##NM_000126|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##NM_001127716|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC029995|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BX647285|SCAPER|49855|S-phase cyclin A-associated protein in the ER##NM_001145923|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AF242528|SCAPER|49855|S-phase cyclin A-associated protein in the ER##NM_020843|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC070197|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC107415|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056515|SCAPER|49855|S-phase cyclin A-associated protein in the ER	0.0	0.0	
chr2	225786821	225786948	reg1002471.p1	7.515	+	TSC_hg19_v1_chr2_-_225450116 NM_003590	-336764	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-336809	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	-336843	-	TSC_hg19_v1_chr2_-_225811768 EU236710	24870	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	120464	-	NM_020864 BC131727 AB040919	478761	+	NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##EU236710|DOCK10|55619|dedicator of cytokinesis 10##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	0.999646	0.0	
chr9	135724213	135724307	reg1004789.p2	7.515	+	AF142328 NM_012204 TSC_hg19_v1_chr9_+_135545875 BC094774 BC011619 BC022787 BC104755 BC112245 AB529214	-178404	+	AF335567 AF335568 AF335569 AF427339 AK027484 NM_022779 NM_138620	-178473	-	TSC_hg19_v1_chr9_+_135545447 BC060821	-178842	+	TSC_hg19_v1_chr9_+_135753719 BC012940	29508	+	BC037402 BC050576 NM_152572	29920	-	AK075259 AJ011375 NM_018956	30026	+	AF142328|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##NM_012204|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC094774|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC011619|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC022787|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC104755|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC112245|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##AF335567|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF335568|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF335569|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF427339|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AK027484|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##NM_022779|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##NM_138620|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##BC060821|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC012940|C9orf9|11092|chromosome 9 open reading frame 9##BC037402|AK8|158067|adenylate kinase 8##BC050576|AK8|158067|adenylate kinase 8##NM_152572|AK8|158067|adenylate kinase 8##AK075259|C9orf9|11092|chromosome 9 open reading frame 9##AJ011375|C9orf9|11092|chromosome 9 open reading frame 9##NM_018956|C9orf9|11092|chromosome 9 open reading frame 9	0.999439	0.978465	CTCF.p2:-90:0.978
chr1	170183682	170183862	reg1004670.p2	7.514	+	BC157860 BC171858 NM_001136107	-68585	+	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	-140029	-	AK122897 NM_001204517	-145717	-	TSC_hg19_v1_chr1_+_170501309 AK308339 NM_001146039 NM_152281 AK021814 BC064945 CU687974 BC047476 AK057661	317531	+	TSC_hg19_v1_chr1_+_170632302 AK225968	448518	+	BC074993 NM_006902 NM_022716 EU446648 AB527492 AB451463 TSC_hg19_v1_chr1_+_170633380 M95929	449590	+	BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##AK308339|GORAB|92344|golgin, RAB6-interacting##NM_001146039|GORAB|92344|golgin, RAB6-interacting##NM_152281|GORAB|92344|golgin, RAB6-interacting##AK021814|GORAB|92344|golgin, RAB6-interacting##BC064945|GORAB|92344|golgin, RAB6-interacting##BC047476|GORAB|92344|golgin, RAB6-interacting##AK057661|GORAB|92344|golgin, RAB6-interacting##AK225968|PRRX1|5396|paired related homeobox 1##BC074993|PRRX1|5396|paired related homeobox 1##NM_006902|PRRX1|5396|paired related homeobox 1##NM_022716|PRRX1|5396|paired related homeobox 1##EU446648|PRRX1|5396|paired related homeobox 1##AB451463|PRRX1|5396|paired related homeobox 1	0.0	0.0	
chrX	25085973	25086110	reg1003725.p2	7.514	+	NM_139058 TSC_hg19_v1_chrX_-_25034074	-51968	-	BC169334 TSC_hg19_v1_chrX_-_25031209	-54848	-	NM_016937 X06745 TSC_hg19_v1_chrX_+_24712066	-373976	+	NM_173699 BC029525 AK057361	1070445	+	AK097561 BC067286 NM_173523	1124515	+	BC157859 NM_001136533	2678884	+	NM_139058|ARX|170302|aristaless related homeobox##BC169334|ARX|170302|aristaless related homeobox##NM_016937|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##X06745|POLA1|5422|polymerase (DNA directed), alpha 1, catalytic subunit##NM_173699|MAGEB18|286514|melanoma antigen family B, 18##BC029525|MAGEB18|286514|melanoma antigen family B, 18##AK057361|MAGEB18|286514|melanoma antigen family B, 18##AK097561|MAGEB6|158809|melanoma antigen family B, 6##BC067286|MAGEB6|158809|melanoma antigen family B, 6##NM_173523|MAGEB6|158809|melanoma antigen family B, 6##BC157859|DCAF8L2|347442|DDB1 and CUL4 associated factor 8-like 2##NM_001136533|DCAF8L2|347442|DDB1 and CUL4 associated factor 8-like 2	1.97622	0.0	denovo_WM_7:-6:0.801	denovo_WM_7:-66:0.909
chr11	65756869	65756974	reg1002499.p2	7.513	+	NM_005146 TSC_hg19_v1_chr11_+_65729203 AK223016 AK293200 AK297589 AK309104 AK298184 BC001058 AB006198 AF353625 DQ891694 EU176645 BT006637 Y14314	-27652	+	AK057442 BC104021 BC104022 BC104023 NM_152762	-43807	+	TSC_hg19_v1_chr11_+_65686920 BC010025 AB463581 CU679579 EU446936 X96506	-69962	+	TSC_hg19_v1_chr11_+_65769409 AF068235 NM_001143985 NM_003860	12558	+	AK094129 TSC_hg19_v1_chr11_-_65769629 BC005131 AK311891 NM_001242481 NM_001242482 NM_001242483 NM_001242484 NM_001242485 NM_001242486 NM_032325	12709	-	TSC_hg19_v1_chr11_+_65769774 BC107702	12898	+	NM_005146|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK223016|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK293200|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK297589|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK298184|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BC001058|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AB006198|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AF353625|SART1|9092|squamous cell carcinoma antigen recognized by T cells##DQ891694|SART1|9092|squamous cell carcinoma antigen recognized by T cells##EU176645|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BT006637|SART1|9092|squamous cell carcinoma antigen recognized by T cells##Y14314|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK057442|TSGA10IP|254187|testis specific, 10 interacting protein##BC104021|TSGA10IP|254187|testis specific, 10 interacting protein##BC104022|TSGA10IP|254187|testis specific, 10 interacting protein##BC104023|TSGA10IP|254187|testis specific, 10 interacting protein##NM_152762|TSGA10IP|254187|testis specific, 10 interacting protein##BC010025|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##EU446936|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##X96506|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##AF068235|BANF1|8815|barrier to autointegration factor 1##NM_001143985|BANF1|8815|barrier to autointegration factor 1##NM_003860|BANF1|8815|barrier to autointegration factor 1##AK094129|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##BC005131|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##AK311891|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242481|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242482|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242483|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242484|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242485|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242486|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_032325|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##BC107702|BANF1|8815|barrier to autointegration factor 1	0.998559	0.284295	CTCF.p2:-7:0.284	denovo_WM_7:29:0.310	denovo_WM_7:30:0.310	denovo_WM_7:31:0.310
chr6	64976230	64976370	reg1004807.p1	7.513	+	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-619858	+	TSC_hg19_v1_chr6_+_64346027 BX648268 AK290491	-630283	+	TSC_hg19_v1_chr6_+_64345729 AK315868 AK298580	-630477	+	AY358133 NM_198283 AK310478	1313405	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	1440793	-	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	3622728	-	AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##BX648268|PHF3|23469|PHD finger protein 3##AK290491|PHF3|23469|PHD finger protein 3##AK315868|PHF3|23469|PHD finger protein 3##AK298580|PHF3|23469|PHD finger protein 3##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3	0.0	0.0	
chr1	186258034	186258133	reg1003684.p1	7.512	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	-554507	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-971613	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-971764	-	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	7324	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	86174	-	BC016514 TSC_hg19_v1_chr1_-_186344361	86262	-	AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)##BC016514|TPR|7175|translocated promoter region (to activated MET oncogene)	0.989822	0.0	denovo_WM_7:-46:0.322	denovo_WM_7:-47:0.322	denovo_WM_7:-48:0.322
chr5	95205278	95205454	reg1004861.p1	7.512	+	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	-46846	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	-46966	-	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-137830	+	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	92132	-	TSC_hg19_v1_chr5_-_95297609 BC028412 NM_012081	92319	-	AK308575 NM_001177876	543322	-	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2##BC028412|ELL2|22936|elongation factor, RNA polymerase II, 2##NM_012081|ELL2|22936|elongation factor, RNA polymerase II, 2##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1	0.965829	0.0	denovo_WM_7:35:0.763
chr10	12164640	12164768	reg1004916.p1	7.511	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	-53697	+	TSC_hg19_v1_chr10_+_12110952 NM_018706	-53768	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-79622	-	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	6949	+	TSC_hg19_v1_chr10_-_12237861 AF218818 AK291131 AF155832 AF161464	73162	-	TSC_hg19_v1_chr10_+_12237965 NM_006023 D14878 AK225634	73257	+	BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF218818|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AK291131|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF155832|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF161464|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##NM_006023|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##D14878|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK225634|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)	0.991867	0.0	denovo_WM_7:-48:0.887
chr16	25025412	25025558	reg1004141.p1	7.510	+	AK125358 TSC_hg19_v1_chr16_-_24968918	-56593	-	TSC_hg19_v1_chr16_-_24942663 AK001170	-82794	-	AY044906 NM_052944 AK298373 AK125267	-167892	+	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	1127	-	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	1207	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	52804	+	AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##AK001170|ARHGAP17|55114|Rho GTPase activating protein 17##AY044906|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##NM_052944|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK298373|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK125267|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887	0.0	0.0	
chr9	140017830	140018002	reg1003681.p2	7.510	+	NM_013379 TSC_hg19_v1_chr9_-_140009194	-8722	-	AK292112 TSC_hg19_v1_chr9_-_140009178	-8741	-	BC011907 BC016961 DQ891460 DQ894637 TSC_hg19_v1_chr9_-_140009169	-8747	-	TSC_hg19_v1_chr9_-_140024189 BC018639	6319	-	TSC_hg19_v1_chr9_+_140032795 L13266	14891	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	15862	+	NM_013379|DPP7|29952|dipeptidyl-peptidase 7##AK292112|DPP7|29952|dipeptidyl-peptidase 7##BC011907|DPP7|29952|dipeptidyl-peptidase 7##BC016961|DPP7|29952|dipeptidyl-peptidase 7##DQ891460|DPP7|29952|dipeptidyl-peptidase 7##DQ894637|DPP7|29952|dipeptidyl-peptidase 7##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1	0.998442	0.0	
chr16	13646521	13646658	reg1001573.p1	7.509	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-651121	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-748870	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-748938	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	367442	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	518497	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	633929	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.0	0.0	
chr20	49163466	49163646	reg1004838.p1	7.508	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	-36551	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-36624	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-36637	+	AK056792 NM_080829	89869	-	TSC_hg19_v1_chr20_-_49308074 AK124347	144521	-	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	184513	+	BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)	0.0	0.0	
chr6	157390181	157390339	reg1004257.p2	7.508	+	TSC_hg19_v1_chr6_+_157099876 AF253515	-290385	+	TSC_hg19_v1_chr6_+_157099283 AF521671	-290976	+	TSC_hg19_v1_chr6_+_157099206 AB587572	-291035	+	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	354324	-	TSC_hg19_v1_chr6_-_157745183 NM_018452	354957	-	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	412279	+	AF253515|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_018452|TMEM242|729515|transmembrane protein 242##AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14	0.984205	0.0	denovo_WM_7:-4:0.680
chr11	10329534	10329699	reg1004825.p1	7.506	+	TSC_hg19_v1_chr11_+_10326623 AK312893 BC015961 D14874 NM_001124	-2987	+	TSC_hg19_v1_chr11_-_10315755 BC101466 AY234241 NM_030962	-13850	-	AK098060 TSC_hg19_v1_chr11_+_9779882	-549754	+	AK295046 NM_001172431	142251	+	NM_000480 BC126118 TSC_hg19_v1_chr11_+_10472246 AK311436 M84720 AK289998 AK294444 AK313039 HQ258646	142779	+	NM_001025389 D12775 AK308181 M84721 AK299113 TSC_hg19_v1_chr11_+_10476953	147203	+	AK312893|ADM|133|adrenomedullin##BC015961|ADM|133|adrenomedullin##D14874|ADM|133|adrenomedullin##NM_001124|ADM|133|adrenomedullin##BC101466|SBF2|81846|SET binding factor 2##AY234241|SBF2|81846|SET binding factor 2##NM_030962|SBF2|81846|SET binding factor 2##AK098060|LOC283104|283104|uncharacterized LOC283104##AK295046|AMPD3|272|adenosine monophosphate deaminase 3##NM_001172431|AMPD3|272|adenosine monophosphate deaminase 3##NM_000480|AMPD3|272|adenosine monophosphate deaminase 3##BC126118|AMPD3|272|adenosine monophosphate deaminase 3##AK311436|AMPD3|272|adenosine monophosphate deaminase 3##M84720|AMPD3|272|adenosine monophosphate deaminase 3##AK289998|AMPD3|272|adenosine monophosphate deaminase 3##AK294444|AMPD3|272|adenosine monophosphate deaminase 3##AK313039|AMPD3|272|adenosine monophosphate deaminase 3##HQ258646|AMPD3|272|adenosine monophosphate deaminase 3##NM_001025389|AMPD3|272|adenosine monophosphate deaminase 3##D12775|AMPD3|272|adenosine monophosphate deaminase 3##AK308181|AMPD3|272|adenosine monophosphate deaminase 3##M84721|AMPD3|272|adenosine monophosphate deaminase 3##AK299113|AMPD3|272|adenosine monophosphate deaminase 3	0.98114	0.0	denovo_WM_7:-2:0.738
chr16	68023766	68023881	reg1004167.p1	7.505	+	AB590471 BC037243 AJ291679 AY358390 BC057789 AK057401 NM_001129758 NM_022357	-9417	-	AF047338 AF054505 AF054506 DQ892254 DQ895457 TSC_hg19_v1_chr16_-_68002543 AK293956 U55054 AK293906 BC021193 BC035480 NM_001145961 NM_001145962 NM_005072	-21294	-	AK299042 NM_001145964	-23085	-	AJ295149 NM_022355	9536	-	TSC_hg19_v1_chr16_-_68057115 BC024273	33285	-	TSC_hg19_v1_chr16_-_68057129 BC014517	33305	-	BC037243|DPEP3|64180|dipeptidase 3##AJ291679|DPEP3|64180|dipeptidase 3##AY358390|DPEP3|64180|dipeptidase 3##BC057789|DPEP3|64180|dipeptidase 3##AK057401|DPEP3|64180|dipeptidase 3##NM_001129758|DPEP3|64180|dipeptidase 3##NM_022357|DPEP3|64180|dipeptidase 3##AF047338|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AF054505|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AF054506|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##DQ892254|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##DQ895457|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK293956|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##U55054|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK293906|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC021193|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC035480|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145961|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145962|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_005072|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK299042|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145964|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AJ295149|DPEP2|64174|dipeptidase 2##NM_022355|DPEP2|64174|dipeptidase 2##BC024273|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28##BC014517|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	0.0	0.0	
chr3	131652605	131652752	reg1004450.p1	7.504	+	TSC_hg19_v1_chr3_-_131221816 CR456720 CU678442 BC002345 X06323 BC003375 AK301377 AK296626 NM_007208	-430924	-	NM_001171905 TSC_hg19_v1_chr3_+_131100637 NM_001171906 NM_152395 BC031215 AK295852 AK304650 BC009546 AK055827	-552027	+	TSC_hg19_v1_chr3_+_131080737 AK000532 BC015593	-571935	+	AK056175 TSC_hg19_v1_chr3_-_131753859 BC014396 NM_130808	101162	-	NM_001099 NM_001134194 AK300540 BC007460 BC016344 TSC_hg19_v1_chr3_+_132036250 BC008493 BC017877 X53605	383560	+	TSC_hg19_v1_chr3_+_132036278 M24902 X52174 M34840 CU677613 CU678987 DQ893148 DQ896443 AB102888	383610	+	CR456720|MRPL3|11222|mitochondrial ribosomal protein L3##X06323|MRPL3|11222|mitochondrial ribosomal protein L3##BC003375|MRPL3|11222|mitochondrial ribosomal protein L3##AK301377|MRPL3|11222|mitochondrial ribosomal protein L3##AK296626|MRPL3|11222|mitochondrial ribosomal protein L3##NM_007208|MRPL3|11222|mitochondrial ribosomal protein L3##NM_001171905|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##NM_001171906|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##NM_152395|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##BC031215|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK295852|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK304650|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##BC009546|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK055827|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK000532|NUDT16P1|152195|nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1##BC015593|NUDT16P1|152195|nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1##AK056175|CPNE4|131034|copine IV##BC014396|CPNE4|131034|copine IV##NM_130808|CPNE4|131034|copine IV##NM_001099|ACPP|55|acid phosphatase, prostate##NM_001134194|ACPP|55|acid phosphatase, prostate##AK300540|ACPP|55|acid phosphatase, prostate##BC007460|ACPP|55|acid phosphatase, prostate##BC016344|ACPP|55|acid phosphatase, prostate##BC008493|ACPP|55|acid phosphatase, prostate##BC017877|ACPP|55|acid phosphatase, prostate##X53605|ACPP|55|acid phosphatase, prostate##M24902|ACPP|55|acid phosphatase, prostate##X52174|ACPP|55|acid phosphatase, prostate##M34840|ACPP|55|acid phosphatase, prostate##DQ893148|ACPP|55|acid phosphatase, prostate##DQ896443|ACPP|55|acid phosphatase, prostate##AB102888|ACPP|55|acid phosphatase, prostate	0.988677	0.0	denovo_WM_7:-35:0.496	denovo_WM_7:-36:0.410
chr14	50427048	50427176	reg1004007.p2	7.502	+	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-66706	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-67279	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	-67294	+	AK091232 AX746864 NM_001012706	47125	-	AF390030 NM_001014830	132248	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	156158	-	AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D	0.997748	0.0	
chr21	46344988	46345168	reg1004713.p1	7.501	+	AB208909 TSC_hg19_v1_chr21_-_46340890 NM_000211	-4159	-	AK222505 TSC_hg19_v1_chr21_-_46340824	-4247	-	TSC_hg19_v1_chr21_-_46340815 L78790 AK303488 M15395 AK128344	-4281	-	TSC_hg19_v1_chr21_-_46348634 AK095992 NM_001127491	3614	-	BC128244 BC128245 AF380178 AY040088 TSC_hg19_v1_chr21_-_46359834 AK127059	14685	-	TSC_hg19_v1_chr21_+_46359920 AF391113 AF391114 BC009341 NM_058190	14847	+	AB208909|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_000211|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK222505|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##L78790|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK303488|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##M15395|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK128344|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK095992|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_001127491|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##BC128244|C21orf67|84536|chromosome 21 open reading frame 67##BC128245|C21orf67|84536|chromosome 21 open reading frame 67##AF380178|C21orf67|84536|chromosome 21 open reading frame 67##AY040088|C21orf67|84536|chromosome 21 open reading frame 67##AF391113|FAM207A|85395|family with sequence similarity 207, member A##AF391114|FAM207A|85395|family with sequence similarity 207, member A##BC009341|FAM207A|85395|family with sequence similarity 207, member A##NM_058190|FAM207A|85395|family with sequence similarity 207, member A	0.998933	0.0	denovo_WM_7:-17:0.427	denovo_WM_7:-18:0.479
chr12	129267676	129267801	reg1003823.p1	7.500	+	NM_001136103	-515791	+	NM_052907	-3456577	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-3717670	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	40705	-	BC043528 TSC_hg19_v1_chr12_+_129337985	70246	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	70349	+	NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1	1.980173	0.0	denovo_WM_7:-46:0.820	denovo_WM_7:-61:0.273	denovo_WM_7:-62:0.330	denovo_WM_7:-63:0.387
chr17	38478906	38479069	reg1000971.p1	7.500	+	TSC_hg19_v1_chr17_+_38474548 AK130192	-4440	+	TSC_hg19_v1_chr17_+_38474521 AK292205 FJ487576	-4463	+	NM_001145301 NM_001145302 TSC_hg19_v1_chr17_+_38474476	-4507	+	NM_001024809	19283	+	TSC_hg19_v1_chr17_-_38520951 AK125254 NM_152219	41959	-	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	95137	-	AK130192|RARA|5914|retinoic acid receptor, alpha##AK292205|RARA|5914|retinoic acid receptor, alpha##FJ487576|RARA|5914|retinoic acid receptor, alpha##NM_001145301|RARA|5914|retinoic acid receptor, alpha##NM_001145302|RARA|5914|retinoic acid receptor, alpha##NM_001024809|RARA|5914|retinoic acid receptor, alpha##AK125254|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_152219|GJD3|125111|gap junction protein, delta 3, 31.9kDa##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa	0.0	0.0	
chr2	229522630	229522750	reg1005303.p1	7.498	+	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	-476328	-	AK097409 NM_178821 BC036377 AK098821 AK301861	-786338	+	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	-844099	+	AB075874 AK125359 TSC_hg19_v1_chr2_-_230135980 BC040164 AK096636 NM_001100818 NM_017933	613315	-	AF442487 TSC_hg19_v1_chr2_-_230579208 AK289553 AY358891 BC035009 NM_139072	1056558	-	BC113891 BC114556 TSC_hg19_v1_chr2_-_230786683 D28476 NM_004238 BC037956 AK302468	1263971	-	HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20##AB075874|PID1|55022|phosphotyrosine interaction domain containing 1##AK125359|PID1|55022|phosphotyrosine interaction domain containing 1##BC040164|PID1|55022|phosphotyrosine interaction domain containing 1##AK096636|PID1|55022|phosphotyrosine interaction domain containing 1##NM_001100818|PID1|55022|phosphotyrosine interaction domain containing 1##NM_017933|PID1|55022|phosphotyrosine interaction domain containing 1##AF442487|DNER|92737|delta/notch-like EGF repeat containing##AK289553|DNER|92737|delta/notch-like EGF repeat containing##AY358891|DNER|92737|delta/notch-like EGF repeat containing##BC035009|DNER|92737|delta/notch-like EGF repeat containing##NM_139072|DNER|92737|delta/notch-like EGF repeat containing##BC113891|TRIP12|9320|thyroid hormone receptor interactor 12##BC114556|TRIP12|9320|thyroid hormone receptor interactor 12##D28476|TRIP12|9320|thyroid hormone receptor interactor 12##NM_004238|TRIP12|9320|thyroid hormone receptor interactor 12##BC037956|TRIP12|9320|thyroid hormone receptor interactor 12##AK302468|TRIP12|9320|thyroid hormone receptor interactor 12	0.130877	0.129154	
chr3	57657205	57657373	reg1004311.p1	7.497	+	TSC_hg19_v1_chr3_-_57583171 NM_001660	-74099	-	BC022866 TSC_hg19_v1_chr3_-_57583106 BC016325	-74170	-	TSC_hg19_v1_chr3_-_57583086 BC008753	-74206	-	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	21450	-	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	85913	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	336858	+	NM_001660|ARF4|378|ADP-ribosylation factor 4##BC022866|ARF4|378|ADP-ribosylation factor 4##BC016325|ARF4|378|ADP-ribosylation factor 4##BC008753|ARF4|378|ADP-ribosylation factor 4##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta	0.984867	0.0	denovo_WM_7:-24:0.879
chr8	98640333	98640513	reg1004721.p1	7.497	+	TSC_hg19_v1_chr8_-_98290193 AK091445 AX746987	-350204	-	TSC_hg19_v1_chr8_-_98290171 BC045630 NM_033512	-350250	-	CU692280 AB384285 AB051537 TSC_hg19_v1_chr8_-_98290135	-350315	-	TSC_hg19_v1_chr8_+_98656416 BC045642 NM_178812 BC001815	15954	+	TSC_hg19_v1_chr8_+_98656437 BC014977 AF501310	16036	+	BC022825 TSC_hg19_v1_chr8_+_98656510 BC009324 AF411226 AY082966 AY974040	16190	+	AK091445|TSPYL5|85453|TSPY-like 5##BC045630|TSPYL5|85453|TSPY-like 5##NM_033512|TSPYL5|85453|TSPY-like 5##AB051537|TSPYL5|85453|TSPY-like 5##BC045642|MTDH|92140|metadherin##NM_178812|MTDH|92140|metadherin##BC001815|MTDH|92140|metadherin##BC014977|MTDH|92140|metadherin##AF501310|MTDH|92140|metadherin##BC022825|MTDH|92140|metadherin##BC009324|MTDH|92140|metadherin##AF411226|MTDH|92140|metadherin##AY082966|MTDH|92140|metadherin##AY974040|MTDH|92140|metadherin	0.464455	0.0	denovo_WM_7:-85:0.436
chr13	42845974	42846106	reg1003686.p2	7.496	+	AK302727 NM_001204505 NM_001204506 AK122909 AK302631 BC043292 BC044822	-133830	+	NM_152910 NM_178009 AB078967 AB078968	-223175	+	AK289546 NM_001204504	-231869	+	TSC_hg19_v1_chr13_+_42846292 AF176555 NM_016248	245	+	BC040889 NM_033012	290831	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	302294	+	AK302727|DGKH|160851|diacylglycerol kinase, eta##NM_001204505|DGKH|160851|diacylglycerol kinase, eta##NM_001204506|DGKH|160851|diacylglycerol kinase, eta##AK122909|DGKH|160851|diacylglycerol kinase, eta##AK302631|DGKH|160851|diacylglycerol kinase, eta##BC043292|DGKH|160851|diacylglycerol kinase, eta##BC044822|DGKH|160851|diacylglycerol kinase, eta##NM_152910|DGKH|160851|diacylglycerol kinase, eta##NM_178009|DGKH|160851|diacylglycerol kinase, eta##AB078967|DGKH|160851|diacylglycerol kinase, eta##AB078968|DGKH|160851|diacylglycerol kinase, eta##AK289546|DGKH|160851|diacylglycerol kinase, eta##NM_001204504|DGKH|160851|diacylglycerol kinase, eta##AF176555|AKAP11|11215|A kinase (PRKA) anchor protein 11##NM_016248|AKAP11|11215|A kinase (PRKA) anchor protein 11##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11	0.0	0.017653	
chr13	43107453	43107582	reg1004276.p2	7.496	+	TSC_hg19_v1_chr13_+_42846292 AF176555 NM_016248	-261232	+	AK302727 NM_001204505 NM_001204506 AK122909 AK302631 BC043292 BC044822	-395307	+	NM_152910 NM_178009 AB078967 AB078968	-484652	+	BC040889 NM_033012	29354	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	40817	+	NM_182508 AK310859 AK098238 BC093659 BC112237	248207	+	AF176555|AKAP11|11215|A kinase (PRKA) anchor protein 11##NM_016248|AKAP11|11215|A kinase (PRKA) anchor protein 11##AK302727|DGKH|160851|diacylglycerol kinase, eta##NM_001204505|DGKH|160851|diacylglycerol kinase, eta##NM_001204506|DGKH|160851|diacylglycerol kinase, eta##AK122909|DGKH|160851|diacylglycerol kinase, eta##AK302631|DGKH|160851|diacylglycerol kinase, eta##BC043292|DGKH|160851|diacylglycerol kinase, eta##BC044822|DGKH|160851|diacylglycerol kinase, eta##NM_152910|DGKH|160851|diacylglycerol kinase, eta##NM_178009|DGKH|160851|diacylglycerol kinase, eta##AB078967|DGKH|160851|diacylglycerol kinase, eta##AB078968|DGKH|160851|diacylglycerol kinase, eta##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30	0.310859	0.0	
chr6	38670783	38670963	reg1000111.p1	7.496	+	BT019987 BT019988 CU674854 S83285 TSC_hg19_v1_chr6_-_38670850 AB209801 AK130312	-33	-	NM_001099272 NM_052893	-62950	-	TSC_hg19_v1_chr6_-_38607697 BX537534	-63207	-	TSC_hg19_v1_chr6_-_38670880 BC015934	2	-	TSC_hg19_v1_chr6_-_38670886 AK129573 L07837 BC001741 AL833442	19	-	TSC_hg19_v1_chr6_-_38670904 BC011365	35	-	BT019987|GLO1|2739|glyoxalase I##BT019988|GLO1|2739|glyoxalase I##S83285|GLO1|2739|glyoxalase I##AB209801|GLO1|2739|glyoxalase I##AK130312|GLO1|2739|glyoxalase I##NM_001099272|BTBD9|114781|BTB (POZ) domain containing 9##NM_052893|BTBD9|114781|BTB (POZ) domain containing 9##BX537534|BTBD9|114781|BTB (POZ) domain containing 9##BC015934|GLO1|2739|glyoxalase I##AK129573|GLO1|2739|glyoxalase I##L07837|GLO1|2739|glyoxalase I##BC001741|GLO1|2739|glyoxalase I##AL833442|GLO1|2739|glyoxalase I##BC011365|GLO1|2739|glyoxalase I	0.0	0.0	
chr16	12630016	12630164	reg1004548.p2	7.495	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-559517	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-571006	+	NM_001130007	-619572	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	267561	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	267629	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	365378	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	0.982445	0.0	denovo_WM_7:5:0.921
chr19	14472650	14472762	reg1003612.p1	7.495	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-155658	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-211906	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-224715	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	19343	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	19549	+	TSC_hg19_v1_chr19_-_14529877 AK301847	57183	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.99911	0.133782	denovo_WM_7:-24:0.310	denovo_WM_7:-25:0.310	denovo_WM_7:-26:0.310
chr2	201733554	201733707	reg1003636.p1	7.494	+	TSC_hg19_v1_chr2_-_201729384 AK307301 BC028573 AK289365 NM_004071	-4209	-	TSC_hg19_v1_chr2_-_201729351 BC028149 BC031549	-4274	-	TSC_hg19_v1_chr2_-_201729241 AK294295 NM_001162407	-4368	-	TSC_hg19_v1_chr2_-_201753860 AF146799 AK297804 AF271652 AF251049 NM_032472 NM_130906 AF414127 AK027315 AY257468 BC007693	20257	-	NM_001136039 NM_001142355 TSC_hg19_v1_chr2_+_201754095 AF060513 AF283538 AK314709 NM_021824 AK225905 AB038949 AK023378 AF182416	20488	+	AY251943 AY251944 BC007654 NM_001142356 CU675739 DQ896612 AB463931 AL834430	23089	+	AK307301|CLK1|1195|CDC-like kinase 1##BC028573|CLK1|1195|CDC-like kinase 1##AK289365|CLK1|1195|CDC-like kinase 1##NM_004071|CLK1|1195|CDC-like kinase 1##BC028149|CLK1|1195|CDC-like kinase 1##BC031549|CLK1|1195|CDC-like kinase 1##AK294295|CLK1|1195|CDC-like kinase 1##NM_001162407|CLK1|1195|CDC-like kinase 1##AF146799|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AK297804|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AF271652|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AF251049|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##NM_032472|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##NM_130906|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AF414127|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AY257468|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##BC007693|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##NM_001136039|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001142355|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF060513|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF283538|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK314709|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_021824|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK225905|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AB038949|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK023378|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF182416|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AY251943|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AY251944|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##BC007654|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001142356|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##DQ896612|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AL834430|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)	0.993159	0.0	
chr16	56736007	56736161	reg1003825.p1	7.493	+	TSC_hg19_v1_chr16_+_56716381 AK311284 AK311373 NM_005952 BC032131 BC032338 BC018190 BC053882 BC029916 X76717 AB528765 S68956	-19669	+	BC008408 NM_005951 BC059780 X64177 BC146930 BC146934 BT007171 S68948	-32324	+	AB528657 S68954 BC035287 BC048334 BC005311 BC020757 NM_005950 TSC_hg19_v1_chr16_-_56701976	-34140	-	NM_014669 TSC_hg19_v1_chr16_+_56764040	27947	+	TSC_hg19_v1_chr16_+_56764089 D42085 AF086282 BC034346 AK292262	28001	+	NM_001242795 AK056637 TSC_hg19_v1_chr16_+_56815740	79651	+	NM_005952|MT1X|4501|metallothionein 1X##BC032131|MT1X|4501|metallothionein 1X##BC032338|MT1X|4501|metallothionein 1X##BC018190|MT1X|4501|metallothionein 1X##BC053882|MT1X|4501|metallothionein 1X##BC029916|MT1X|4501|metallothionein 1X##X76717|MT1X|4501|metallothionein 1X##S68956|MT1X|4501|metallothionein 1X##BC008408|MT1H|4496|metallothionein 1H##NM_005951|MT1H|4496|metallothionein 1H##BC059780|MT1H|4496|metallothionein 1H##X64177|MT1H|4496|metallothionein 1H##BC146930|MT1H|4496|metallothionein 1H##BC146934|MT1H|4496|metallothionein 1H##BT007171|MT1H|4496|metallothionein 1H##S68948|MT1H|4496|metallothionein 1H##S68954|MT1G|4495|metallothionein 1G##BC035287|MT1G|4495|metallothionein 1G##BC005311|MT1G|4495|metallothionein 1G##BC020757|MT1G|4495|metallothionein 1G##NM_005950|MT1G|4495|metallothionein 1G##NM_014669|NUP93|9688|nucleoporin 93kDa##D42085|NUP93|9688|nucleoporin 93kDa##AF086282|NUP93|9688|nucleoporin 93kDa##BC034346|NUP93|9688|nucleoporin 93kDa##AK292262|NUP93|9688|nucleoporin 93kDa##NM_001242795|NUP93|9688|nucleoporin 93kDa##AK056637|NUP93|9688|nucleoporin 93kDa	0.330372	0.893932	CTCF.p2:50:0.894	denovo_WM_7:-100:0.330
chr1	65701678	65701805	reg1004858.p1	7.493	+	TSC_hg19_v1_chr1_+_65613971 BC040224 BC136886 BC136887 BC148270 CR456830 CU688216 DQ892294 DQ895494	-87711	+	TSC_hg19_v1_chr1_+_65613835 NM_013410 AK025926 AK313611 X60673	-87893	+	TSC_hg19_v1_chr1_+_65613263 NM_203464 BC146653 BC016180 AK309057 BC066944 NM_001005353	-88380	+	TSC_hg19_v1_chr1_+_65720144 AK123450 BC051722	18378	+	AK296408 NM_014787 AB007942	28688	+	BC140007 NM_001198683 NM_017526 TSC_hg19_v1_chr1_+_65886266	184461	+	BC040224|AK4|205|adenylate kinase 4##BC136886|AK4|205|adenylate kinase 4##BC136887|AK4|205|adenylate kinase 4##BC148270|AK4|205|adenylate kinase 4##CR456830|AK4|205|adenylate kinase 4##DQ892294|AK4|205|adenylate kinase 4##DQ895494|AK4|205|adenylate kinase 4##NM_013410|AK4|205|adenylate kinase 4##AK025926|AK4|205|adenylate kinase 4##AK313611|AK4|205|adenylate kinase 4##X60673|AK4|205|adenylate kinase 4##NM_203464|AK4|205|adenylate kinase 4##BC146653|AK4|205|adenylate kinase 4##BC016180|AK4|205|adenylate kinase 4##AK309057|AK4|205|adenylate kinase 4##BC066944|AK4|205|adenylate kinase 4##NM_001005353|AK4|205|adenylate kinase 4##AK123450|LOC645195|645195|uncharacterized LOC645195##BC051722|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##AK296408|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##NM_014787|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##AB007942|DNAJC6|9829|DnaJ (Hsp40) homolog, subfamily C, member 6##BC140007|LEPROT|54741|leptin receptor overlapping transcript##NM_001198683|LEPROT|54741|leptin receptor overlapping transcript##NM_017526|LEPROT|54741|leptin receptor overlapping transcript	0.999064	0.204116	CTCF.p2:19:0.204	denovo_WM_7:-45:0.722
chr9	129767709	129767826	reg1001711.p1	7.493	+	AF221098 NM_001190728 AB385313 CU689706	-43232	+	TSC_hg19_v1_chr9_+_129677073 AB002349 NM_001190729 NM_001190730 NM_014636 BC033708 BC019329 AK299149 BC032372	-90663	+	TSC_hg19_v1_chr9_+_129622936 AB082524 NM_001099270	-144823	+	AK075026 TSC_hg19_v1_chr9_-_129870392	102585	-	TSC_hg19_v1_chr9_-_129884914 AK074726 BC012368 AK307175	117141	-	TSC_hg19_v1_chr9_-_129884962 AK312876	117195	-	AF221098|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190728|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AB002349|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190729|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190730|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_014636|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC033708|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC019329|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK299149|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC032372|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AB082524|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001099270|ZBTB34|403341|zinc finger and BTB domain containing 34##AK075026|ANGPTL2|23452|angiopoietin-like 2##AK074726|ANGPTL2|23452|angiopoietin-like 2##BC012368|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2	0.0	0.0	
chr2	64367914	64368088	reg1003953.p1	7.492	+	TSC_hg19_v1_chr2_-_64246563 AK292669 AK292889	-121496	-	BC030275 NM_001005739 NM_016516 TSC_hg19_v1_chr2_-_64246305	-121739	-	BX647825 NM_006759 AK314263 TSC_hg19_v1_chr2_+_64069029 BC047004 BC000173	-298975	+	TSC_hg19_v1_chr2_-_64371555 AK022261 BC063611 BC050533 AK312441 BC050019 NM_020651	3523	-	TSC_hg19_v1_chr2_+_64681295 NM_014181	313299	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	313647	+	AK292669|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##AK292889|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##BC030275|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_001005739|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_016516|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##BX647825|UGP2|7360|UDP-glucose pyrophosphorylase 2##NM_006759|UGP2|7360|UDP-glucose pyrophosphorylase 2##AK314263|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC047004|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC000173|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC063611|PELI1|57162|pellino homolog 1 (Drosophila)##BC050533|PELI1|57162|pellino homolog 1 (Drosophila)##AK312441|PELI1|57162|pellino homolog 1 (Drosophila)##BC050019|PELI1|57162|pellino homolog 1 (Drosophila)##NM_020651|PELI1|57162|pellino homolog 1 (Drosophila)##NM_014181|LGALSL|29094|lectin, galactoside-binding-like##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like	1.238385	0.0	denovo_WM_7:-71:0.922
chr17	29646307	29646445	reg1001709.p1	7.491	+	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	-5265	-	TSC_hg19_v1_chr17_-_29641092 BC005926	-5287	-	AK312822 TSC_hg19_v1_chr17_-_29641073	-5305	-	TSC_hg19_v1_chr17_-_29648631 BC035572 AK295311 AK312348 NM_001003927 NM_014210	2322	-	AY169244 NM_032932 TSC_hg19_v1_chr17_+_29718692	72291	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	72488	+	AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC035572|EVI2A|2123|ecotropic viral integration site 2A##AK295311|EVI2A|2123|ecotropic viral integration site 2A##AK312348|EVI2A|2123|ecotropic viral integration site 2A##NM_001003927|EVI2A|2123|ecotropic viral integration site 2A##NM_014210|EVI2A|2123|ecotropic viral integration site 2A##AY169244|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##NM_032932|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)	0.999632	0.0	denovo_WM_7:23:0.842
chr19	6088135	6088310	reg1004151.p2	7.491	+	AK299856 TSC_hg19_v1_chr19_-_5978306 NM_003624 NM_007320 NM_007322	-109938	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	-110071	-	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	-110110	-	TSC_hg19_v1_chr19_-_6110512 AK291196 BC071571 X76091	22301	-	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	22390	-	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	47531	+	AK299856|RANBP3|8498|RAN binding protein 3##NM_003624|RANBP3|8498|RAN binding protein 3##NM_007320|RANBP3|8498|RAN binding protein 3##NM_007322|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK291196|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC071571|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##X76091|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2	0.999703	0.0	
chr5	124747147	124747277	reg1004748.p1	7.490	+	BC131507 AB033107 BC151226 NM_020747	-666424	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1899330	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1988068	-	NM_001146319 AK316288 AK300154	948602	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1011631	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1011975	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.98447	0.0	denovo_WM_7:-8:0.537
chr8	29348356	29348536	reg1004072.p3	7.490	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-140376	-	AL137704 NM_057158	-142125	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-227832	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	592028	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	592126	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	604497	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.990683	0.0	denovo_WM_7:53:0.834
chr9	114981175	114981350	reg1004830.p2	7.489	+	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	-43742	-	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-321795	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-322148	+	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	114025	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	114587	-	TSC_hg19_v1_chr9_-_115095957 NM_001163788 NM_001163790 NM_001244896 NM_001244897 NM_005156	114711	-	AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001163788|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001163790|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244896|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244897|PTBP3|9991|polypyrimidine tract binding protein 3##NM_005156|PTBP3|9991|polypyrimidine tract binding protein 3	0.915785	0.0	denovo_WM_7:-18:0.834
chr2	43793229	43793388	reg1004850.p1	7.488	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-339566	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-339578	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-339963	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	29840	-	TSC_hg19_v1_chr2_+_43864411 BC063310	71105	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	71131	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	1.946273	0.0	denovo_WM_7:-28:0.821	denovo_WM_7:-73:0.917
chr22	32188630	32188745	reg1002909.p2	7.487	+	NM_001136029 AB014545 BC146766 AJ698950 AJ698951 AJ704764 AB383936 CU691240	-37810	+	TSC_hg19_v1_chr22_+_32150004 NM_001007188 NM_001242896 NM_014662 AK300737 BC057797 BC136612 BC144291	-38639	+	TSC_hg19_v1_chr22_+_32149962 AK294987	-38724	+	TSC_hg19_v1_chr22_+_32340520 NM_003405 X78138 BC003047 S80794	151801	+	TSC_hg19_v1_chr22_+_32340608 AK312650 CR456612 AB385077 L20422 CU013208 CU013496	151968	+	AJ704765 AJ704766 AL050256 NM_015372 AK315264	152634	-	NM_001136029|DEPDC5|9681|DEP domain containing 5##AB014545|DEPDC5|9681|DEP domain containing 5##BC146766|DEPDC5|9681|DEP domain containing 5##AJ698950|DEPDC5|9681|DEP domain containing 5##AJ698951|DEPDC5|9681|DEP domain containing 5##AJ704764|DEPDC5|9681|DEP domain containing 5##NM_001007188|DEPDC5|9681|DEP domain containing 5##NM_001242896|DEPDC5|9681|DEP domain containing 5##NM_014662|DEPDC5|9681|DEP domain containing 5##AK300737|DEPDC5|9681|DEP domain containing 5##BC057797|DEPDC5|9681|DEP domain containing 5##BC136612|DEPDC5|9681|DEP domain containing 5##BC144291|DEPDC5|9681|DEP domain containing 5##AK294987|DEPDC5|9681|DEP domain containing 5##NM_003405|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##X78138|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##BC003047|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##S80794|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AK312650|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CR456612|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##L20422|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013208|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013496|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AJ704765|C22orf24|25775|chromosome 22 open reading frame 24##AJ704766|C22orf24|25775|chromosome 22 open reading frame 24##AL050256|C22orf24|25775|chromosome 22 open reading frame 24##NM_015372|C22orf24|25775|chromosome 22 open reading frame 24##AK315264|C22orf24|25775|chromosome 22 open reading frame 24	1.853156	0.0	
chr16	21478570	21478710	reg1004635.p1	7.486	+	BC036263 NM_130464	-41983	-	BX648477 NM_001014444 NM_001888	-164253	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-188992	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	53112	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	132250	+	AF151839 TSC_hg19_v1_chr16_+_21611174	132514	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	0.0	0.0	
chr19	11050735	11050847	reg1003677.p2	7.486	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-11334	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-11552	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-68355	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	20855	+	TSC_hg19_v1_chr19_+_11071717 BC007302	20924	+	TSC_hg19_v1_chr19_+_11071720 BC035916	20959	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	2.963009	0.0	denovo_WM_7:-44:0.954	denovo_WM_7:-59:0.959	denovo_WM_7:-74:0.967
chr2	62293419	62293590	reg1004914.p2	7.485	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-160675	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-177718	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-177770	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	129762	+	BC047439 AK091902 AX747245 NM_198276	440035	-	AK292545 NM_001142615	607481	+	AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1	0.999103	0.0	denovo_WM_7:74:0.310	denovo_WM_7:75:0.310	denovo_WM_7:76:0.310
chr2	86226313	86226483	reg1004018.p1	7.485	+	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	-110312	-	AY152815 NM_001042437	-131606	-	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-245393	+	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	106585	-	NM_015425	106879	-	NM_017952 TSC_hg19_v1_chr2_+_86333357 AK293962 BC011832 AB528740	106943	+	AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##NM_015425|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##NM_017952|PTCD3|55037|Pentatricopeptide repeat domain 3##AK293962|PTCD3|55037|Pentatricopeptide repeat domain 3##BC011832|PTCD3|55037|Pentatricopeptide repeat domain 3	0.988295	0.0	denovo_WM_7:-5:0.911
chr3	105087274	105087402	reg1003455.p1	7.484	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-1516	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-1758	+	AY090780 NM_175056 BC143817	-2933471	+	CR749655 TSC_hg19_v1_chr3_-_105421064	333716	-	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	500469	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1872141	-	AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b	0.451041	0.0	
chr6	28626039	28626162	reg1003535.p1	7.484	+	AK056369 BX647791 AY517631 NM_052923	-71012	-	AJ005277 BC128159 BC128160 NM_001509 NM_003996 AB463692	-132312	+	BC133691 BC148315 AY324826 NM_182701	-142534	-	CU680626 CU688196 DQ890982 DQ894156 AB528391 TSC_hg19_v1_chr6_-_28891498	265369	-	AF230393 AF230394 J03407 TSC_hg19_v1_chr6_-_28891717 AB209885 BC013580 AJ420519	265580	-	TSC_hg19_v1_chr6_-_28891741 BC066924 AX776009 AX776011 NM_006510	265667	-	AK056369|SCAND3|114821|SCAN domain containing 3##BX647791|SCAND3|114821|SCAN domain containing 3##AY517631|SCAND3|114821|SCAN domain containing 3##NM_052923|SCAND3|114821|SCAN domain containing 3##AJ005277|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##BC128159|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##BC128160|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##NM_001509|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##NM_003996|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##BC133691|GPX6|257202|glutathione peroxidase 6 (olfactory)##BC148315|GPX6|257202|glutathione peroxidase 6 (olfactory)##AY324826|GPX6|257202|glutathione peroxidase 6 (olfactory)##NM_182701|GPX6|257202|glutathione peroxidase 6 (olfactory)##DQ890982|TRIM27|5987|tripartite motif containing 27##DQ894156|TRIM27|5987|tripartite motif containing 27##AF230393|TRIM27|5987|tripartite motif containing 27##AF230394|TRIM27|5987|tripartite motif containing 27##J03407|TRIM27|5987|tripartite motif containing 27##AB209885|TRIM27|5987|tripartite motif containing 27##BC013580|TRIM27|5987|tripartite motif containing 27##AJ420519|TRIM27|5987|tripartite motif containing 27##BC066924|TRIM27|5987|tripartite motif containing 27##AX776009|TRIM27|5987|tripartite motif containing 27##AX776011|TRIM27|5987|tripartite motif containing 27##NM_006510|TRIM27|5987|tripartite motif containing 27	0.996102	0.0	denovo_WM_7:53:0.928
chr7	28737916	28738061	reg1005049.p1	7.483	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	-12305	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-207223	+	L05911 NM_004904	-262755	+	CU690330 TSC_hg19_v1_chr7_-_28997732	259709	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	259941	-	AK293803 NM_014817 TSC_hg19_v1_chr7_-_28998036	260044	-	L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats##NM_014817|TRIL|9865|TLR4 interactor with leucine-rich repeats	0.990153	0.0	denovo_WM_7:-6:0.330	denovo_WM_7:-7:0.330	denovo_WM_7:-8:0.330
chrY	1405345	1405506	reg1003193.p1	7.483	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-53842	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-67711	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-123841	-	BC035407 NM_002183	83	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	55544	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	116376	-	NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like	0.987002	0.0	denovo_WM_7:24:0.892
chr13	25497344	25497524	reg1003679.p1	7.481	+	TSC_hg19_v1_chr13_-_25497054 NM_018451	-365	-	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	-465	-	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	-159115	+	NM_030979 AL136900 AK313336 BC045608 BC027617 AF132026 DQ892103 DQ895297	172871	+	AK098343 BC032653 TSC_hg19_v1_chr13_-_25745701	248226	-	TSC_hg19_v1_chr13_-_25745778 NM_152704 NM_199138	248383	-	NM_018451|CENPJ|55835|centromere protein J##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##NM_030979|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AL136900|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AK313336|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##BC045608|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##BC027617|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AF132026|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##DQ892103|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##DQ895297|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AK098343|FAM123A|219287|family with sequence similarity 123A##BC032653|FAM123A|219287|family with sequence similarity 123A##NM_152704|FAM123A|219287|family with sequence similarity 123A##NM_199138|FAM123A|219287|family with sequence similarity 123A	1.715506	0.0	denovo_WM_7:13:0.652	denovo_WM_7:-43:0.293	denovo_WM_7:-46:0.564
chr3	156382759	156382913	reg1003650.p1	7.481	+	TSC_hg19_v1_chr3_-_156272919 AF087907 AF110647 BC017203 NM_007107	-109893	-	TSC_hg19_v1_chr3_-_156272894 BT006669 DQ892572 DQ895788 AK304364 AK312935	-109955	-	NM_172159 BC043166 AK127240	-374026	+	NM_015508	9368	+	AK291261 TSC_hg19_v1_chr3_+_156392402 BX537965 BC050350	9566	+	CR749647 NM_001184717	9878	+	AF087907|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF110647|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BC017203|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_007107|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BT006669|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ892572|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ895788|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK304364|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK312935|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_015508|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AK291261|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BX537965|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BC050350|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##CR749647|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##NM_001184717|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase	0.0	0.0	
chr8	2964366	2964515	reg1005127.p1	7.481	+	AK128880 TSC_hg19_v1_chr8_-_2585966	-378458	-	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-971238	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-1011532	+	AY017307 TSC_hg19_v1_chr8_-_4852228	1887785	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	1887854	-	TSC_hg19_v1_chr8_-_6264053 BC036625	3299617	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	0.986807	0.0	denovo_WM_7:16:0.954
chr16	53984054	53984206	reg1002118.p2	7.480	+	TSC_hg19_v1_chr16_+_53738067 AK096554 AB051539 AK295196	-246062	+	NM_001080432	-246256	+	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	-246373	-	BC034328 TSC_hg19_v1_chr16_-_54319025	334834	-	TSC_hg19_v1_chr16_+_54319531 AK309303	335391	+	DQ892008 EU176666 TSC_hg19_v1_chr16_-_54320043	335876	-	AK096554|FTO|79068|fat mass and obesity associated##AB051539|FTO|79068|fat mass and obesity associated##AK295196|FTO|79068|fat mass and obesity associated##NM_001080432|FTO|79068|fat mass and obesity associated##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##BC034328|IRX3|79191|iroquois homeobox 3##DQ892008|IRX3|79191|iroquois homeobox 3##EU176666|IRX3|79191|iroquois homeobox 3	1.010625	0.0	
chr6	6333317	6333396	reg1003916.p2	7.479	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-12446	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	-12471	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	-325659	-	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	255594	+	BC039678 TSC_hg19_v1_chr6_+_6725205	391805	+	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	774470	+	NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1	0.0	0.0	
chr10	104436164	104436338	reg1003852.p2	7.478	+	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	-31967	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-172432	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-172532	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	37846	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	38094	+	TSC_hg19_v1_chr10_+_104503704 AK300871	67419	+	NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2##AK300871|C10orf26|54838|chromosome 10 open reading frame 26	0.98504	0.0	denovo_WM_7:47:0.545	denovo_WM_7:50:0.365
chr18	46478651	46478802	reg1000358.p2	7.478	+	AF010193 NM_001190821 NM_005904	-1646	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-1959	-	AK301535 NM_001190822	-3024	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	508325	-	TSC_hg19_v1_chr18_-_47013575 AB097012	534839	-	TSC_hg19_v1_chr18_-_47013599 BC093004	534873	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.0	0.0	
chr4	153482891	153483046	reg1004444.p1	7.478	+	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-25535	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-26674	-	NM_001013415 AY008274	-179304	-	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	118232	-	BC037869 NM_145720	217935	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	218053	+	AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	0.991765	0.0	denovo_WM_7:44:0.895
chr1	27826414	27826594	reg1004528.p1	7.477	+	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	-9828	-	TSC_hg19_v1_chr1_-_27816670 BC012329	-9833	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	-9904	-	BC042058 NM_001029882	103617	-	BC064935 TSC_hg19_v1_chr1_-_27930394	103873	-	AK125143 TSC_hg19_v1_chr1_-_27952648 NM_001042747	126166	-	NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##NM_001029882|AHDC1|27245|AT hook, DNA binding motif, containing 1##BC064935|AHDC1|27245|AT hook, DNA binding motif, containing 1##AK125143|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042747|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog	0.196444	0.0	denovo_WM_7:-107:0.221
chr16	21910352	21910490	reg1005042.p1	7.477	+	AK316459 AK296301 AK303500 AK301703 AK294452 TSC_hg19_v1_chr16_-_21854901	-55593	-	BC009198 BC068999 TSC_hg19_v1_chr16_-_21831777 BC070157	-78661	-	AK093062 AX747895 NM_170664 BC040551 AK302733	-194104	+	NM_003366 AK307535 TSC_hg19_v1_chr16_+_21964618	54207	+	TSC_hg19_v1_chr16_+_21964679 J04973 BC003136	54264	+	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	54300	+	AK316459|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296301|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AK303500|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK301703|LOC613037|613037|nuclear pore complex interacting protein pseudogene##AK294452|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC009198|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC068999|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC070157|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##AK093062|OTOA|146183|otoancorin##NM_170664|OTOA|146183|otoancorin##BC040551|OTOA|146183|otoancorin##AK302733|OTOA|146183|otoancorin##NM_003366|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK307535|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##J04973|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##BC003136|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II	0.0	0.0	
chr19	2165666	2165837	reg1004455.p2	7.477	+	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	-1613	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-14198	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-14209	-	BC021037 TSC_hg19_v1_chr19_+_2222534	56723	+	BC032803 TSC_hg19_v1_chr19_+_2232168	66370	+	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	70538	-	AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1	0.991629	0.0	denovo_WM_7:25:0.331	denovo_WM_7:26:0.331	denovo_WM_7:27:0.331
chr21	36421332	36421512	reg1002815.p1	7.476	+	AB384992 AF419247 U19601 BC110828 TSC_hg19_v1_chr21_-_36421376 AK226159	-136	-	TSC_hg19_v1_chr21_-_36260987 BC050363 X79549 D43967 D43968 NM_001001890 NM_001122607	-160441	-	L34598 D10570 TSC_hg19_v1_chr21_-_36260304	-161225	-	BC136380 BC136381 BC144053 TSC_hg19_v1_chr21_-_36421490	56	-	TSC_hg19_v1_chr21_-_36421575 X90979	145	-	TSC_hg19_v1_chr21_-_36421585 AK310587 D89788 D89789 D89790	159	-	U19601|RUNX1|861|runt-related transcription factor 1##BC110828|RUNX1|861|runt-related transcription factor 1##AK226159|RUNX1|861|runt-related transcription factor 1##BC050363|RUNX1|861|runt-related transcription factor 1##X79549|RUNX1|861|runt-related transcription factor 1##D43967|RUNX1|861|runt-related transcription factor 1##D43968|RUNX1|861|runt-related transcription factor 1##NM_001001890|RUNX1|861|runt-related transcription factor 1##NM_001122607|RUNX1|861|runt-related transcription factor 1##L34598|RUNX1|861|runt-related transcription factor 1##D10570|RUNX1|861|runt-related transcription factor 1##BC136380|RUNX1|861|runt-related transcription factor 1##BC136381|RUNX1|861|runt-related transcription factor 1##BC144053|RUNX1|861|runt-related transcription factor 1##X90979|RUNX1|861|runt-related transcription factor 1##AK310587|RUNX1|861|runt-related transcription factor 1##D89788|RUNX1|861|runt-related transcription factor 1##D89789|RUNX1|861|runt-related transcription factor 1##D89790|RUNX1|861|runt-related transcription factor 1	0.999404	0.422424	denovo_WM_7:-1:0.739	CTCF.p2:-89:0.422
chr2	70352122	70352248	reg1004609.p1	7.474	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-37187	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-37268	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-37358	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	65936	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	123534	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	133065	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.991053	0.0	denovo_WM_7:-85:0.330	denovo_WM_7:-86:0.330	denovo_WM_7:-87:0.330
chr7	130742558	130742738	reg1003945.p2	7.474	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-323721	-	AF294347 AF431815 BC038415 NM_052933	-371293	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-389053	-	TSC_hg19_v1_chr7_-_130792857 BC047367	50211	-	AK294384 NM_001145354	52206	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	269958	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	1.817182	0.0	denovo_WM_7:82:0.794
chr2	215602122	215602258	reg1003433.p1	7.471	+	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	-325730	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-1453033	+	AK124960 NM_001242575	-1453262	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	72169	-	AY033486 NM_015657	294619	-	BC144073 AY219711 NM_173076	400919	-	BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	0.0	0.0	
chr5	137364105	137364261	reg1005317.p1	7.471	+	NM_014386 BC044581 AK301924 BC038714 AF182034 AF118125 CU692208	-139032	+	AF133820 AK300076 AK307620 AK312733 BC005376 TSC_hg19_v1_chr5_+_137203565 AF144477	-160617	+	NM_001135940 NM_006790 AK300088 TSC_hg19_v1_chr5_+_137203548	-160637	+	TSC_hg19_v1_chr5_-_137368717 AF251038	4519	-	TSC_hg19_v1_chr5_-_137368770 BC041335 BC048965	4588	-	TSC_hg19_v1_chr5_-_137368776 AK314224	4593	-	NM_014386|PKD2L2|27039|polycystic kidney disease 2-like 2##BC044581|PKD2L2|27039|polycystic kidney disease 2-like 2##AK301924|PKD2L2|27039|polycystic kidney disease 2-like 2##BC038714|PKD2L2|27039|polycystic kidney disease 2-like 2##AF182034|PKD2L2|27039|polycystic kidney disease 2-like 2##AF118125|PKD2L2|27039|polycystic kidney disease 2-like 2##AF133820|MYOT|9499|myotilin##AK300076|MYOT|9499|myotilin##AK307620|MYOT|9499|myotilin##AK312733|MYOT|9499|myotilin##BC005376|MYOT|9499|myotilin##AF144477|MYOT|9499|myotilin##NM_001135940|MYOT|9499|myotilin##NM_006790|MYOT|9499|myotilin##AK300088|MYOT|9499|myotilin##AF251038|FAM13B|51306|family with sequence similarity 13, member B##BC041335|FAM13B|51306|family with sequence similarity 13, member B##BC048965|FAM13B|51306|family with sequence similarity 13, member B##AK314224|FAM13B|51306|family with sequence similarity 13, member B	0.0	0.0	
chr19	39035170	39035300	reg1004732.p2	7.470	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-110891	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-118363	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-141334	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	73353	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	74478	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	74581	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.0	0.998476	CTCF.p2:-36:0.998
chrX	41781029	41781176	reg1004554.p2	7.470	+	BC070180 NM_080817 AK122626 AK313702 AL832460	-197682	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-232835	+	AJ278865 AF254868 NM_022567	-474403	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	1223	-	BC044787 TSC_hg19_v1_chrX_+_43514289	1733121	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	1734312	+	BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##AJ278865|NYX|60506|nyctalopin##AF254868|NYX|60506|nyctalopin##NM_022567|NYX|60506|nyctalopin##AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A	0.995792	0.0	
chr20	30651679	30651806	reg1004650.p1	7.469	+	TSC_hg19_v1_chr20_+_30640055 NM_001172129 NM_001172130 NM_001172131 NM_001172132 NM_001172133 NM_002110 AK289896 AK225819 AK290928 AK298726 AK026432 BC108930 BC108931 BC113854 BC114463 AK314335 BC073748 BC094847 BC014435	-11696	+	NM_080625 AK057090 BC030254	-53494	+	AY534245 NM_001011718 TSC_hg19_v1_chr20_+_30555960	-95853	+	TSC_hg19_v1_chr20_+_30697308 NM_014742	45627	+	TSC_hg19_v1_chr20_+_30697532 AK126534 AK294980 AK296500 AK302439 BC021107 D87444	45799	+	TSC_hg19_v1_chr20_-_30795547 AK292450 BC000197 D83784 AF006005 BC023655 NM_002657	143733	-	NM_001172129|HCK|3055|hemopoietic cell kinase##NM_001172130|HCK|3055|hemopoietic cell kinase##NM_001172131|HCK|3055|hemopoietic cell kinase##NM_001172132|HCK|3055|hemopoietic cell kinase##NM_001172133|HCK|3055|hemopoietic cell kinase##NM_002110|HCK|3055|hemopoietic cell kinase##AK289896|HCK|3055|hemopoietic cell kinase##AK225819|HCK|3055|hemopoietic cell kinase##AK290928|HCK|3055|hemopoietic cell kinase##AK298726|HCK|3055|hemopoietic cell kinase##AK026432|HCK|3055|hemopoietic cell kinase##BC108930|HCK|3055|hemopoietic cell kinase##BC108931|HCK|3055|hemopoietic cell kinase##BC113854|HCK|3055|hemopoietic cell kinase##BC114463|HCK|3055|hemopoietic cell kinase##AK314335|HCK|3055|hemopoietic cell kinase##BC073748|HCK|3055|hemopoietic cell kinase##BC094847|HCK|3055|hemopoietic cell kinase##BC014435|HCK|3055|hemopoietic cell kinase##NM_080625|C20orf160|140706|chromosome 20 open reading frame 160##AK057090|C20orf160|140706|chromosome 20 open reading frame 160##BC030254|C20orf160|140706|chromosome 20 open reading frame 160##AY534245|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_001011718|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_014742|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK126534|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK294980|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK296500|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK302439|TM9SF4|9777|transmembrane 9 superfamily protein member 4##BC021107|TM9SF4|9777|transmembrane 9 superfamily protein member 4##D87444|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK292450|PLAGL2|5326|pleiomorphic adenoma gene-like 2##D83784|PLAGL2|5326|pleiomorphic adenoma gene-like 2##AF006005|PLAGL2|5326|pleiomorphic adenoma gene-like 2##BC023655|PLAGL2|5326|pleiomorphic adenoma gene-like 2##NM_002657|PLAGL2|5326|pleiomorphic adenoma gene-like 2	1.976791	0.0	denovo_WM_7:58:0.267	denovo_WM_7:59:0.691	denovo_WM_7:74:0.832
chr18	1092402	1092500	reg1004989.p2	7.468	+	NM_001117 BC093837 BC101803 S83513	-187110	+	AK313050 NM_001099733	-187508	+	TSC_hg19_v1_chr18_-_812273 AK314063 BC048960 BC031080 NM_005433	-280148	-	AK290001 BC111020 NM_022840	1479004	-	NM_006101 BC005239 TSC_hg19_v1_chr18_+_2571579 AK289396 AK313184 BC035617 BC010171	1479094	+	TSC_hg19_v1_chr18_+_2571589 AF017790	1479144	+	NM_001117|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##BC093837|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##BC101803|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##S83513|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##AK313050|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##NM_001099733|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##AK314063|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##BC048960|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##BC031080|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##NM_005433|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##AK290001|METTL4|64863|methyltransferase like 4##BC111020|METTL4|64863|methyltransferase like 4##NM_022840|METTL4|64863|methyltransferase like 4##NM_006101|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC005239|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK289396|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK313184|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC035617|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC010171|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AF017790|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)	0.99353	0.0	denovo_WM_7:-20:0.849
chr6	150076514	150076651	reg1004294.p1	7.468	+	TSC_hg19_v1_chr6_+_150070878 AK289724 BC007501 D13892 AK304532 AK129778 BC008748 D25545 D25546 D25547 M93008 CU675673	-5636	+	TSC_hg19_v1_chr6_+_150070845 AK098739	-5735	+	TSC_hg19_v1_chr6_+_150070835 NM_001252049 NM_001252050 NM_001252051 NM_001252052 NM_001252053 NM_005389	-5755	+	AK027641 AK223134 TSC_hg19_v1_chr6_-_150185169	108608	-	TSC_hg19_v1_chr6_-_150185496 BC025239 BC043141 NM_032832	108861	-	AY054974 AY176317 AY252119 EF489426 AF359243 BC101976 BC103694 AY069961 NM_001243325 NM_001243327 NM_139165	135520	-	AK289724|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##BC007501|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##D13892|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##AK304532|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##AK129778|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##BC008748|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##D25545|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##D25546|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##D25547|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##M93008|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##AK098739|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##NM_001252049|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##NM_001252050|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##NM_001252051|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##NM_001252052|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##NM_001252053|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##NM_005389|PCMT1|5110|protein-L-isoaspartate (D-aspartate) O-methyltransferase##AK027641|LRP11|84918|low density lipoprotein receptor-related protein 11##AK223134|LRP11|84918|low density lipoprotein receptor-related protein 11##BC025239|LRP11|84918|low density lipoprotein receptor-related protein 11##BC043141|LRP11|84918|low density lipoprotein receptor-related protein 11##NM_032832|LRP11|84918|low density lipoprotein receptor-related protein 11##AY054974|RAET1E|135250|retinoic acid early transcript 1E##AY176317|RAET1E|135250|retinoic acid early transcript 1E##AY252119|RAET1E|135250|retinoic acid early transcript 1E##EF489426|RAET1E|135250|retinoic acid early transcript 1E##AF359243|RAET1E|135250|retinoic acid early transcript 1E##BC101976|RAET1E|135250|retinoic acid early transcript 1E##BC103694|RAET1E|135250|retinoic acid early transcript 1E##AY069961|RAET1E|135250|retinoic acid early transcript 1E##NM_001243325|RAET1E|135250|retinoic acid early transcript 1E##NM_001243327|RAET1E|135250|retinoic acid early transcript 1E##NM_139165|RAET1E|135250|retinoic acid early transcript 1E	0.979666	0.0	denovo_WM_7:-12:0.486	denovo_WM_7:-14:0.426
chrX	13715599	13715764	reg1001465.p1	7.468	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	-8388	+	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	-8440	+	AK291271 AK315599 NM_152634 AK294465	-44415	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	37027	-	TSC_hg19_v1_chrX_+_13752866 NM_003611 AK290354 AK289677 BC012324 BC030787 BC062432 Y15164 Y16355	37153	+	AK225847 BC042830 TSC_hg19_v1_chrX_+_13752900	37219	+	AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2##NM_003611|OFD1|8481|oral-facial-digital syndrome 1##AK290354|OFD1|8481|oral-facial-digital syndrome 1##AK289677|OFD1|8481|oral-facial-digital syndrome 1##BC012324|OFD1|8481|oral-facial-digital syndrome 1##BC030787|OFD1|8481|oral-facial-digital syndrome 1##BC062432|OFD1|8481|oral-facial-digital syndrome 1##Y15164|OFD1|8481|oral-facial-digital syndrome 1##Y16355|OFD1|8481|oral-facial-digital syndrome 1##AK225847|OFD1|8481|oral-facial-digital syndrome 1##BC042830|OFD1|8481|oral-facial-digital syndrome 1	0.770467	0.0	denovo_WM_7:-32:0.681
chr12	105114443	105114584	reg1003264.p1	7.467	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-263426	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-263705	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-263742	+	TSC_hg19_v1_chr12_+_105153261 AF131762	38764	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	207750	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	265577	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.962693	0.0	denovo_WM_7:44:0.358	denovo_WM_7:45:0.409
chr13	79960671	79960851	reg1004711.p3	7.467	+	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	-727468	-	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	-783038	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	-790479	+	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	19193	-	BC030806 TSC_hg19_v1_chr13_-_79980382	19622	-	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	19690	+	AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##BC030806|RBM26|64062|RNA binding motif protein 26##AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)	1.987923	0.0	denovo_WM_7:39:0.785
chr8	133746533	133746680	reg1006576.p1	7.467	+	TSC_hg19_v1_chr8_-_133687792 BC027589 BC047286 NM_012472 AK313107	-58779	-	NM_004519 TSC_hg19_v1_chr8_-_133493146	-253529	-	TSC_hg19_v1_chr8_-_133492751 AB527350 BC128576	-253819	-	BC062592 AK057631 BC105783 NM_001145153 NM_144649	26254	-	TSC_hg19_v1_chr8_+_133787606 NM_016018 NM_032205 NM_198513	40977	+	TSC_hg19_v1_chr8_+_133787633 AK290506 BC002822 BC015211	41036	+	BC027589|LRRC6|23639|leucine rich repeat containing 6##BC047286|LRRC6|23639|leucine rich repeat containing 6##NM_012472|LRRC6|23639|leucine rich repeat containing 6##AK313107|LRRC6|23639|leucine rich repeat containing 6##NM_004519|KCNQ3|3786|potassium voltage-gated channel, KQT-like subfamily, member 3##BC128576|KCNQ3|3786|potassium voltage-gated channel, KQT-like subfamily, member 3##BC062592|TMEM71|137835|transmembrane protein 71##AK057631|TMEM71|137835|transmembrane protein 71##BC105783|TMEM71|137835|transmembrane protein 71##NM_001145153|TMEM71|137835|transmembrane protein 71##NM_144649|TMEM71|137835|transmembrane protein 71##NM_016018|PHF20L1|51105|PHD finger protein 20-like 1##NM_032205|PHF20L1|51105|PHD finger protein 20-like 1##NM_198513|PHF20L1|51105|PHD finger protein 20-like 1##AK290506|PHF20L1|51105|PHD finger protein 20-like 1##BC002822|PHF20L1|51105|PHD finger protein 20-like 1##BC015211|PHF20L1|51105|PHD finger protein 20-like 1	0.0	0.0	
chr8	123793897	123794010	reg1003027.p1	7.466	+	TSC_hg19_v1_chr8_+_123793897 NM_014943	-42	+	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	-1140327	-	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-1969447	-	BC042145 TSC_hg19_v1_chr8_+_123794000	41	+	TSC_hg19_v1_chr8_+_123794108 AB020661	150	+	TSC_hg19_v1_chr8_+_123963651 EU446694 AB083653	169746	+	NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##AB020661|ZHX2|22882|zinc fingers and homeoboxes 2##EU446694|ZHX2|22882|zinc fingers and homeoboxes 2##AB083653|ZHX2|22882|zinc fingers and homeoboxes 2	1.009005	0.0	denovo_WM_7:7:0.341	denovo_WM_7:9:0.586
chr12	116997828	116997939	reg1001970.p2	7.465	+	NM_001085481	-698	+	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	-26654	+	TSC_hg19_v1_chr12_-_116715263 AY338463	-282723	-	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	177855	-	TSC_hg19_v1_chr12_-_117175868 AK222983 AK298857	177986	-	TSC_hg19_v1_chr12_+_117176119 NM_001109903 NM_032814 BC011878 AK027533	178236	+	NM_001085481|MAP1LC3B2|643246|microtubule-associated protein 1 light chain 3 beta 2##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173##AY338463|MED13L|23389|mediator complex subunit 13-like##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49##AK222983|C12orf49|79794|chromosome 12 open reading frame 49##AK298857|C12orf49|79794|chromosome 12 open reading frame 49##NM_001109903|RNFT2|84900|ring finger protein, transmembrane 2##NM_032814|RNFT2|84900|ring finger protein, transmembrane 2##BC011878|RNFT2|84900|ring finger protein, transmembrane 2##AK027533|RNFT2|84900|ring finger protein, transmembrane 2	0.979827	0.0	denovo_WM_7:-1:0.783
chr22	24772716	24772855	reg1004209.p1	7.464	+	TSC_hg19_v1_chr22_+_24666804 NM_001145468 NM_015330 AK097129 AK301482 AB209022 AL832425 BC005093 BC136471	-105945	+	CT841518 AK292006 BC073999 M64099 AK225661 AK226019 AK297869 AK304522 AK312401 AK293683 AL117414 BC011362 NM_001099781 NM_001099782 NM_004121	-131806	-	BC033107 NM_019601 TSC_hg19_v1_chr22_+_24577443	-195341	+	TSC_hg19_v1_chr22_+_24819870 EU036694	47095	+	NM_000675 AK123058 EU036693 AK301420 BC013780	50780	+	AK314727 CR627429 CR456375 NM_016327 BC131703 TSC_hg19_v1_chr22_+_24891299 AF163312 AB013885 BC033388 AB528843 BC139840 BC139843 CU013080 CU013368	118456	+	NM_001145468|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##NM_015330|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##AK097129|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##AK301482|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##AL832425|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##BC005093|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##BC136471|SPECC1L|23384|sperm antigen with calponin homology and coiled-coil domains 1-like##CT841518|GGT5|2687|gamma-glutamyltransferase 5##AK292006|GGT5|2687|gamma-glutamyltransferase 5##BC073999|GGT5|2687|gamma-glutamyltransferase 5##M64099|GGT5|2687|gamma-glutamyltransferase 5##AK225661|GGT5|2687|gamma-glutamyltransferase 5##AK226019|GGT5|2687|gamma-glutamyltransferase 5##AK297869|GGT5|2687|gamma-glutamyltransferase 5##AK304522|GGT5|2687|gamma-glutamyltransferase 5##AK312401|GGT5|2687|gamma-glutamyltransferase 5##AK293683|GGT5|2687|gamma-glutamyltransferase 5##AL117414|GGT5|2687|gamma-glutamyltransferase 5##BC011362|GGT5|2687|gamma-glutamyltransferase 5##NM_001099781|GGT5|2687|gamma-glutamyltransferase 5##NM_001099782|GGT5|2687|gamma-glutamyltransferase 5##NM_004121|GGT5|2687|gamma-glutamyltransferase 5##BC033107|SUSD2|56241|sushi domain containing 2##NM_019601|SUSD2|56241|sushi domain containing 2##EU036694|ADORA2A|135|adenosine A2a receptor##NM_000675|ADORA2A|135|adenosine A2a receptor##AK123058|ADORA2A|135|adenosine A2a receptor##EU036693|ADORA2A|135|adenosine A2a receptor##BC013780|ADORA2A|135|adenosine A2a receptor##AK314727|UPB1|51733|ureidopropionase, beta##CR627429|UPB1|51733|ureidopropionase, beta##CR456375|UPB1|51733|ureidopropionase, beta##NM_016327|UPB1|51733|ureidopropionase, beta##BC131703|UPB1|51733|ureidopropionase, beta##AF163312|UPB1|51733|ureidopropionase, beta##AB013885|UPB1|51733|ureidopropionase, beta##BC033388|UPB1|51733|ureidopropionase, beta##BC139840|UPB1|51733|ureidopropionase, beta##BC139843|UPB1|51733|ureidopropionase, beta##CU013080|UPB1|51733|ureidopropionase, beta##CU013368|UPB1|51733|ureidopropionase, beta	1.987942	0.0	denovo_WM_7:7:0.991	denovo_WM_7:96:0.851
chr12	92895510	92895627	reg1004945.p1	7.463	+	AJ845168 NM_001025232	-73645	-	AJ845165 AJ845166 NM_001025233	-77834	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-355925	-	NM_001037671 NM_001178097	201050	+	NM_001004330 AK128530	234719	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	427370	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.99204	0.0	denovo_WM_7:-15:0.837
chr13	41579519	41579684	reg1004066.p2	7.463	+	AK304289 BC010575 BC030507 NM_001145353	-23213	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	-23405	-	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	-83736	-	TSC_hg19_v1_chr13_-_41593453 M82882	13842	-	TSC_hg19_v1_chr13_-_41593499 NM_172373	13898	-	BX640798 TSC_hg19_v1_chr13_-_41635093	55484	-	AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##M82882|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_172373|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BX640798|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	1.752789	0.0	denovo_WM_7:19:0.755
chr19	19431324	19431495	reg1004695.p1	7.463	+	AK096152 AK292085 AK294618 AK301119 BC119728 BC119729 BC142988 TSC_hg19_v1_chr19_-_19431319 NM_172231	-58	-	TSC_hg19_v1_chr19_-_19431308 BC063784 AY072916 AY072917 AF521128	-116	-	AB067513 TSC_hg19_v1_chr19_-_19384189	-47215	-	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	225	+	TSC_hg19_v1_chr19_+_19431662 AB385396	255	+	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	65297	+	AK096152|SUGP1|57794|SURP and G patch domain containing 1##AK292085|SUGP1|57794|SURP and G patch domain containing 1##AK294618|SUGP1|57794|SURP and G patch domain containing 1##AK301119|SUGP1|57794|SURP and G patch domain containing 1##BC119728|SUGP1|57794|SURP and G patch domain containing 1##BC119729|SUGP1|57794|SURP and G patch domain containing 1##BC142988|SUGP1|57794|SURP and G patch domain containing 1##NM_172231|SUGP1|57794|SURP and G patch domain containing 1##BC063784|SUGP1|57794|SURP and G patch domain containing 1##AY072916|SUGP1|57794|SURP and G patch domain containing 1##AY072917|SUGP1|57794|SURP and G patch domain containing 1##AF521128|SUGP1|57794|SURP and G patch domain containing 1##NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A	0.992223	0.0	denovo_WM_7:18:0.788
chrX	130881306	130881432	reg1000075.p2	7.463	+	BC137050 AB529233 NM_001004486	-203371	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-457957	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-458107	-	TSC_hg19_v1_chrX_-_130964633 AK097911	83282	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	275952	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	276271	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr12	40015169	40015326	reg1004544.p2	7.461	+	AK314254 NM_005164	-1405	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	-178248	-	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-715864	-	BC038754 NM_001031748 BC048120 AK097445	4748	+	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	484442	-	TSC_hg19_v1_chr12_-_40499870 BC047507	484625	-	AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13	0.0	0.0	
chr19	36031528	36031651	reg1004401.p1	7.461	+	NM_014364 AK314980 BC036373 AK225727 AY306129 AJ005371 DQ890856 DQ894010	-7219	+	BC063640 BX648076 AK291305 AY358701 NM_001166034 NM_001166035 NM_198538	-12366	-	BC035311 AY358412 NM_001126056 NM_001126057 NM_001126058 NM_001190347 NM_001190348 NM_001190349 NM_033317	-27033	-	TSC_hg19_v1_chr19_-_36036403 AK092032 AX747325	4815	-	TSC_hg19_v1_chr19_+_36036553 NM_001242597 NM_001242598 NM_032635 Y18007 BC001118 CU674562	4955	+	TSC_hg19_v1_chr19_-_36036923 CR627053	5319	-	NM_014364|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##AK314980|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##BC036373|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##AK225727|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##AY306129|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##AJ005371|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##DQ890856|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##DQ894010|GAPDHS|26330|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic##BC063640|SBSN|374897|suprabasin##BX648076|SBSN|374897|suprabasin##AK291305|SBSN|374897|suprabasin##AY358701|SBSN|374897|suprabasin##NM_001166034|SBSN|374897|suprabasin##NM_001166035|SBSN|374897|suprabasin##NM_198538|SBSN|374897|suprabasin##BC035311|DMKN|93099|dermokine##AY358412|DMKN|93099|dermokine##NM_001126056|DMKN|93099|dermokine##NM_001126057|DMKN|93099|dermokine##NM_001126058|DMKN|93099|dermokine##NM_001190347|DMKN|93099|dermokine##NM_001190348|DMKN|93099|dermokine##NM_001190349|DMKN|93099|dermokine##NM_033317|DMKN|93099|dermokine##AK092032|LOC100506469|100506469|uncharacterized LOC100506469##NM_001242597|TMEM147|10430|transmembrane protein 147##NM_001242598|TMEM147|10430|transmembrane protein 147##NM_032635|TMEM147|10430|transmembrane protein 147##Y18007|TMEM147|10430|transmembrane protein 147##BC001118|TMEM147|10430|transmembrane protein 147##CR627053|LOC100506469|100506469|uncharacterized LOC100506469	0.0	0.0	
chr21	34756328	34756444	reg1003228.p2	7.461	+	AK222770 AK222812 AK312631 TSC_hg19_v1_chr21_+_34697277 BC021825 J03171 BC002590 AB528746 CU692410 DQ891323 DQ894507	-59068	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	-59168	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	-117632	+	TSC_hg19_v1_chr21_+_34775192 NM_005534 U05875	18810	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	19346	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	19362	+	AK222770|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK222812|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK312631|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC021825|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##J03171|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC002590|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ891323|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ894507|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_005534|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05875|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)	1.993284	0.0	
chr10	4022985	4023163	reg1005094.p2	7.459	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-195565	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-195763	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-808069	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	845344	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	982440	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	982549	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.101086	0.0	
chr1	24242058	24242186	reg1004522.p2	7.457	+	BC069722 NM_001841 X74328 FJ357036	-2318	-	CU675950 TSC_hg19_v1_chr1_-_24194781 M29877 AB074175 AK092914 AK095443 AK095455 AK225468 AK301302 AK310143 AK314649 AX747804 BC017338 AK295535 NM_000147	-47313	-	TSC_hg19_v1_chr1_-_24151934 NM_000191 NM_001166059	-90174	-	NM_017761 TSC_hg19_v1_chr1_+_24286310	44183	+	TSC_hg19_v1_chr1_+_24286317 AF151042 AK300522 BC068475 AK311305 BC001959 BC085018 BC078177 AF374386	44224	+	TSC_hg19_v1_chr1_-_24306818 AF449427 CU674556 AB528881 AY150180 AY150181 AF047448 AF067730 AY007101 BC010074 BC005039 AK001286 AK001656 BC071575 AF419331	64661	-	BC069722|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_001841|CNR2|1269|cannabinoid receptor 2 (macrophage)##X74328|CNR2|1269|cannabinoid receptor 2 (macrophage)##M29877|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AB074175|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK092914|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095443|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095455|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK225468|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK301302|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK310143|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK314649|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC017338|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK295535|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000147|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000191|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_001166059|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_017761|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF151042|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC068475|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AK311305|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC001959|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC085018|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC078177|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF374386|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF449427|SRSF10|10772|serine/arginine-rich splicing factor 10##AY150180|SRSF10|10772|serine/arginine-rich splicing factor 10##AY150181|SRSF10|10772|serine/arginine-rich splicing factor 10##AF047448|SRSF10|10772|serine/arginine-rich splicing factor 10##AF067730|SRSF10|10772|serine/arginine-rich splicing factor 10##AY007101|SRSF10|10772|serine/arginine-rich splicing factor 10##BC010074|SRSF10|10772|serine/arginine-rich splicing factor 10##BC005039|SRSF10|10772|serine/arginine-rich splicing factor 10##AK001286|SRSF10|10772|serine/arginine-rich splicing factor 10##AK001656|SRSF10|10772|serine/arginine-rich splicing factor 10##BC071575|SRSF10|10772|serine/arginine-rich splicing factor 10##AF419331|SRSF10|10772|serine/arginine-rich splicing factor 10	1.977856	0.0	denovo_WM_7:-26:0.287	denovo_WM_7:-32:0.419	denovo_WM_7:-50:0.442	denovo_WM_7:-51:0.443
chr10	90844223	90844357	reg1003104.p2	7.456	+	AK311424 TSC_hg19_v1_chr10_+_90751184 AK311164 AK311499	-93169	+	TSC_hg19_v1_chr10_-_90751090 AY692464 NM_001141945	-93240	-	TSC_hg19_v1_chr10_+_90750599 AK290978 X63717 M67454 X83490 X83491 X83492 X83493 DQ894675 AY495076 CR450307 EU481974 FJ373045 FJ373046 FM246457 FM246458 FM246459 X89101 Z47993 Z47994 Z47995 Z66556 Z70519 Z70520	-93782	+	CU687230 DQ892026 DQ895218 BC072430 AF059214 BC017843 NM_003956 AK314865	122770	-	U08464 Z31690 TSC_hg19_v1_chr10_-_91011533 AK222760 AK290241 AK297079 AK314665 M74775	167240	-	AK130882 TSC_hg19_v1_chr10_-_91011565	167277	-	AK311424|FAS|355|Fas (TNF receptor superfamily, member 6)##AK311164|FAS|355|Fas (TNF receptor superfamily, member 6)##AK311499|FAS|355|Fas (TNF receptor superfamily, member 6)##AY692464|ACTA2|59|actin, alpha 2, smooth muscle, aorta##NM_001141945|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK290978|FAS|355|Fas (TNF receptor superfamily, member 6)##X63717|FAS|355|Fas (TNF receptor superfamily, member 6)##M67454|FAS|355|Fas (TNF receptor superfamily, member 6)##X83490|FAS|355|Fas (TNF receptor superfamily, member 6)##X83491|FAS|355|Fas (TNF receptor superfamily, member 6)##X83492|FAS|355|Fas (TNF receptor superfamily, member 6)##X83493|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ894675|FAS|355|Fas (TNF receptor superfamily, member 6)##AY495076|FAS|355|Fas (TNF receptor superfamily, member 6)##CR450307|FAS|355|Fas (TNF receptor superfamily, member 6)##EU481974|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373045|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373046|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246457|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246458|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246459|FAS|355|Fas (TNF receptor superfamily, member 6)##X89101|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47993|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47994|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47995|FAS|355|Fas (TNF receptor superfamily, member 6)##Z66556|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70519|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70520|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ892026|CH25H|9023|cholesterol 25-hydroxylase##DQ895218|CH25H|9023|cholesterol 25-hydroxylase##BC072430|CH25H|9023|cholesterol 25-hydroxylase##AF059214|CH25H|9023|cholesterol 25-hydroxylase##BC017843|CH25H|9023|cholesterol 25-hydroxylase##NM_003956|CH25H|9023|cholesterol 25-hydroxylase##AK314865|CH25H|9023|cholesterol 25-hydroxylase##U08464|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##Z31690|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK222760|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK290241|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK297079|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK314665|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##M74775|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK130882|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase	2.841579	0.0	denovo_WM_7:-47:0.267
chr16	46843127	46843261	reg1004438.p2	7.456	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-61032	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-119597	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-119629	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	21894	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	75087	+	NM_001142466 AK094971	75908	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.993846	0.0	denovo_WM_7:12:0.981
chr8	124287587	124287669	reg1001142.p1	7.456	+	TSC_hg19_v1_chr8_-_124286697 NM_001017926 NM_001204180 NM_007222	-937	-	AF195766 TSC_hg19_v1_chr8_-_124286514 AK094451 BC040481	-1105	-	TSC_hg19_v1_chr8_-_124253618 AK222660 GQ129275 GQ129276 BC067796 AK027731 NM_032847	-34018	-	AL833653 AY598335 BC113656 BC143716 TSC_hg19_v1_chr8_-_124408640 BC007123	120921	-	TSC_hg19_v1_chr8_-_124408665 BC112942	121037	-	TSC_hg19_v1_chr8_-_124408671 AK097133	121049	-	NM_001017926|ZHX1|11244|zinc fingers and homeoboxes 1##NM_001204180|ZHX1-C8ORF76|100533106|ZHX1-C8ORF76 readthrough##NM_007222|ZHX1|11244|zinc fingers and homeoboxes 1##AF195766|ZHX1|11244|zinc fingers and homeoboxes 1##AK094451|ZHX1|11244|zinc fingers and homeoboxes 1##BC040481|ZHX1|11244|zinc fingers and homeoboxes 1##AK222660|C8orf76|84933|chromosome 8 open reading frame 76##GQ129275|C8orf76|84933|chromosome 8 open reading frame 76##GQ129276|C8orf76|84933|chromosome 8 open reading frame 76##BC067796|C8orf76|84933|chromosome 8 open reading frame 76##AK027731|C8orf76|84933|chromosome 8 open reading frame 76##NM_032847|C8orf76|84933|chromosome 8 open reading frame 76##AL833653|ATAD2|29028|ATPase family, AAA domain containing 2##AY598335|ATAD2|29028|ATPase family, AAA domain containing 2##BC113656|ATAD2|29028|ATPase family, AAA domain containing 2##BC143716|ATAD2|29028|ATPase family, AAA domain containing 2##BC007123|ATAD2|29028|ATPase family, AAA domain containing 2##BC112942|ATAD2|29028|ATPase family, AAA domain containing 2##AK097133|ATAD2|29028|ATPase family, AAA domain containing 2	0.0	0.0	
chr4	144403999	144404140	reg1005021.p1	7.455	+	NM_002039 NM_207123 AK289767 BC064848	-146054	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	-297944	+	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	-298005	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	30659	+	AB384709 TSC_hg19_v1_chr4_+_144435139	31045	+	TSC_hg19_v1_chr4_+_144480613 AX721285 AX721289 BC025996	76547	+	NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC025996|GUSBP5|441046|glucuronidase, beta pseudogene 5	0.0	0.01269	
chr5	115912994	115913155	reg1003635.p1	7.454	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-2560	-	TSC_hg19_v1_chr5_+_115898220 D28352	-14850	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-492353	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2411164	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2493737	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2494091	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr5	31581688	31581813	reg1004131.p1	7.453	+	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	-49315	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	-49528	-	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	-387873	+	TSC_hg19_v1_chr5_+_31639424 AB002298	57720	+	NM_178140	217280	+	TSC_hg19_v1_chr5_+_32173523 AK055939	591766	+	NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III##BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AB002298|PDZD2|23037|PDZ domain containing 2##NM_178140|PDZD2|23037|PDZ domain containing 2##AK055939|LOC153546|153546|uncharacterized LOC153546	0.768553	0.631882	denovo_WM_7:-19:0.232	denovo_WM_7:-20:0.525	CTCF.p2:35:0.632
chr3	101528170	101528296	reg1004524.p1	7.451	+	AK289689 NM_001134456	-29948	+	TSC_hg19_v1_chr3_+_101498080 BC009431	-30145	+	NM_145037 TSC_hg19_v1_chr3_+_101498054	-30185	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	18727	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	40141	+	AY090780 NM_175056 BC143817	625634	+	AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C##NM_145037|FAM55C|91775|family with sequence similarity 55, member C##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1	0.038574	0.936708	CTCF.p2:-5:0.937
chr11	305062	305171	reg1004430.p1	7.450	+	BC150562 BC150563 NM_001025295	-5595	-	TSC_hg19_v1_chr11_+_289125 AK074155 NM_025092 BC066641	-15974	+	AF479748 AY154461 NM_138329	-26547	+	NM_006435 TSC_hg19_v1_chr11_+_308199 BC009696 DQ891667 DQ894615 BT009859 CR456894 CR541874 X02490	3054	+	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	8895	+	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	15728	-	BC150562|IFITM5|387733|interferon induced transmembrane protein 5##BC150563|IFITM5|387733|interferon induced transmembrane protein 5##NM_001025295|IFITM5|387733|interferon induced transmembrane protein 5##AK074155|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##NM_025092|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC066641|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##AF479748|NLRP6|171389|NLR family, pyrin domain containing 6##AY154461|NLRP6|171389|NLR family, pyrin domain containing 6##NM_138329|NLRP6|171389|NLR family, pyrin domain containing 6##NM_006435|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BC009696|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##DQ891667|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##DQ894615|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BT009859|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##CR456894|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##CR541874|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##X02490|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3	0.543272	0.863296	CTCF.p2:8:0.863
chr20	50121470	50121571	reg1003445.p2	7.450	+	BC006367 TSC_hg19_v1_chr20_-_49639664 BC046629 AK290689 NM_002237	-481863	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	-546152	+	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	-546457	-	EU887573 EU887578 AB590566 TSC_hg19_v1_chr20_-_50159239 BC136418 BC144074	37619	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	37755	-	EU887574 EU887577 NM_001136021	57647	-	BC006367|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC046629|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##AK290689|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##NM_002237|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##EU887573|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887578|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC136418|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC144074|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	2.004298	0.0	denovo_WM_7:25:0.442	denovo_WM_7:26:0.295	denovo_WM_7:41:0.323	denovo_WM_7:42:0.470
chr7	129045556	129045724	reg1003588.p2	7.450	+	AK316073 NM_001130722	-30157	+	TSC_hg19_v1_chr7_+_129008062 AK025372	-37552	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	-37654	+	TSC_hg19_v1_chr7_+_129074283 NM_001134336 NM_020704 AK290165 BC019064 AB032996 CU676366 AB463039 AM392619 AM392944 AM392960 AM393447	28633	+	BC050400 NM_001195243 BC035417	96724	+	TSC_hg19_v1_chr7_-_129251474 AK123679	205838	-	AK316073|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130722|AHCYL2|23382|adenosylhomocysteinase-like 2##AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001134336|FAM40B|57464|family with sequence similarity 40, member B##NM_020704|FAM40B|57464|family with sequence similarity 40, member B##AK290165|FAM40B|57464|family with sequence similarity 40, member B##BC019064|FAM40B|57464|family with sequence similarity 40, member B##AB032996|FAM40B|57464|family with sequence similarity 40, member B##AM392619|FAM40B|57464|family with sequence similarity 40, member B##AM392944|FAM40B|57464|family with sequence similarity 40, member B##AM392960|FAM40B|57464|family with sequence similarity 40, member B##AM393447|FAM40B|57464|family with sequence similarity 40, member B##BC050400|LOC100287482|100287482|uncharacterized LOC100287482##NM_001195243|LOC100287482|100287482|uncharacterized LOC100287482##BC035417|LOC100287482|100287482|uncharacterized LOC100287482	0.495912	0.0	denovo_WM_7:-93:0.277
chr15	68128829	68128934	reg1003385.p1	7.449	+	NM_001031807	-10941	+	AK293459 NM_001206804	-287540	+	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	-293859	+	AF167160 NM_016166 BC118587 BC121797 TSC_hg19_v1_chr15_+_68346652 AK314515 BC104646	217731	+	TSC_hg19_v1_chr15_+_68346659 BC053685 AB590990 AF077951 EF487997 EF487998 FJ997900 AY826819	217780	+	TSC_hg19_v1_chr15_-_68497633 BX640702 BC009516 AK092628 AK296804 AX747637	368756	-	NM_001031807|SKOR1|390598|SKI family transcriptional corepressor 1##AK293459|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001206804|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5##AF167160|PIAS1|8554|protein inhibitor of activated STAT, 1##NM_016166|PIAS1|8554|protein inhibitor of activated STAT, 1##BC118587|PIAS1|8554|protein inhibitor of activated STAT, 1##BC121797|PIAS1|8554|protein inhibitor of activated STAT, 1##AK314515|PIAS1|8554|protein inhibitor of activated STAT, 1##BC104646|PIAS1|8554|protein inhibitor of activated STAT, 1##BC053685|PIAS1|8554|protein inhibitor of activated STAT, 1##AF077951|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487997|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487998|PIAS1|8554|protein inhibitor of activated STAT, 1##FJ997900|PIAS1|8554|protein inhibitor of activated STAT, 1##AY826819|PIAS1|8554|protein inhibitor of activated STAT, 1##BX640702|CALML4|91860|calmodulin-like 4##BC009516|CALML4|91860|calmodulin-like 4##AK092628|CALML4|91860|calmodulin-like 4##AK296804|CALML4|91860|calmodulin-like 4	0.0	0.142302	
chr6	53053086	53053172	reg1001525.p1	7.449	+	BC096288 BC096289 AK309881 NM_003643 D88613	-39526	-	AF176704 NM_012347	-117359	+	TSC_hg19_v1_chr6_+_52930242 AF155114 AL137520 NM_033480	-122808	+	AK125098 TSC_hg19_v1_chr6_-_53213676	160510	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	160592	-	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	160732	-	BC096288|GCM1|8521|glial cells missing homolog 1 (Drosophila)##BC096289|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AK309881|GCM1|8521|glial cells missing homolog 1 (Drosophila)##NM_003643|GCM1|8521|glial cells missing homolog 1 (Drosophila)##D88613|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AF176704|FBXO9|26268|F-box protein 9##NM_012347|FBXO9|26268|F-box protein 9##AL137520|FBXO9|26268|F-box protein 9##NM_033480|FBXO9|26268|F-box protein 9##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5	1.372012	0.0	denovo_WM_7:-46:0.255	denovo_WM_7:-61:0.245
chr7	1013835	1014014	reg1005040.p2	7.449	+	TSC_hg19_v1_chr7_-_994377 AJ006422	-19461	-	TSC_hg19_v1_chr7_-_994317 NM_006869	-19611	-	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	-19809	-	BC042434 BC053372 TSC_hg19_v1_chr7_-_1015171 BC058158 AK023185 BC110420 BC070383 AK290517 AY957566 BC103632 NM_001031617	1265	-	TSC_hg19_v1_chr7_+_1022816 BC025761 NM_017781	8894	+	TSC_hg19_v1_chr7_+_1022978 AK000366	9045	+	AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##BC042434|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC053372|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC058158|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK023185|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC110420|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC070383|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK290517|ADAP1|11033|ArfGAP with dual PH domains 1##AY957566|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC103632|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_001031617|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC025761|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##NM_017781|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##AK000366|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1	0.997294	0.0	
chr8	103842613	103842781	reg1004570.p1	7.449	+	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	-174765	-	BC011538 NM_001032282 S81439	-176605	-	NM_024410 AK315276 BC104456 BC104457	-278836	+	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	33662	-	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	33698	-	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	190570	+	AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	0.990878	0.0	
chr16	81041198	81041318	reg1004592.p1	7.448	+	TSC_hg19_v1_chr16_+_81040849 AK298554	-380	+	TSC_hg19_v1_chr16_+_81040818 BC008972 AK296024 AK026313	-440	+	TSC_hg19_v1_chr16_+_81040541 AF217515	-717	+	TSC_hg19_v1_chr16_+_81069446 AX775771 NM_015251 BC002701 AK290943	28255	+	AK057264 AK295411 BC064143 NM_001100873 NM_152337	69579	-	BT009827 CR457072 AK311978 M69175 BC000790 BC009065 BC020922 TSC_hg19_v1_chr16_-_81130001 D00723 NM_004483	88695	-	AK298554|CENPN|55839|centromere protein N##BC008972|CENPN|55839|centromere protein N##AK296024|CENPN|55839|centromere protein N##AK026313|CENPN|55839|centromere protein N##AF217515|CENPN|55839|centromere protein N##NM_015251|ATMIN|23300|ATM interactor##BC002701|ATMIN|23300|ATM interactor##AK290943|ATMIN|23300|ATM interactor##AK057264|C16orf46|123775|chromosome 16 open reading frame 46##AK295411|C16orf46|123775|chromosome 16 open reading frame 46##BC064143|C16orf46|123775|chromosome 16 open reading frame 46##NM_001100873|C16orf46|123775|chromosome 16 open reading frame 46##NM_152337|C16orf46|123775|chromosome 16 open reading frame 46##BT009827|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##CR457072|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##AK311978|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##M69175|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##BC000790|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##BC009065|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##BC020922|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##D00723|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##NM_004483|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)	0.0	0.0	
chr19	42055729	42055861	reg1003362.p1	7.448	+	NM_001130514	-106733	+	TSC_hg19_v1_chr19_-_41945831 AK298197 NM_001167869 NM_001167870 NM_001167871 NM_018035	-109962	-	TSC_hg19_v1_chr19_-_41945814 BC013323 AK316313	-109981	-	BC012001 NM_001098506 NM_033543 TSC_hg19_v1_chr19_+_42082583 AY358084 BC106727 CU680160	26782	+	D90276 AK298701 NM_001817	77639	-	AF006622 AF006623 L31792 NM_006890 X98311 BC121132 TSC_hg19_v1_chr19_-_42192198 AK292213 AK296634 AK311285 AK313108	136357	-	NM_001130514|C19orf69|100170765|chromosome 19 open reading frame 69##AK298197|ATP5SL|55101|ATP5S-like##NM_001167869|ATP5SL|55101|ATP5S-like##NM_001167870|ATP5SL|55101|ATP5S-like##NM_001167871|ATP5SL|55101|ATP5S-like##NM_018035|ATP5SL|55101|ATP5S-like##BC013323|ATP5SL|55101|ATP5S-like##AK316313|ATP5SL|55101|ATP5S-like##BC012001|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##NM_001098506|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##NM_033543|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##AY358084|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##BC106727|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##D90276|CEACAM4|1089|carcinoembryonic antigen-related cell adhesion molecule 4##AK298701|CEACAM4|1089|carcinoembryonic antigen-related cell adhesion molecule 4##NM_001817|CEACAM4|1089|carcinoembryonic antigen-related cell adhesion molecule 4##AF006622|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AF006623|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##L31792|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##NM_006890|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##X98311|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##BC121132|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK292213|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK296634|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK311285|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK313108|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7	0.927459	0.0	denovo_WM_7:-10:0.584	denovo_WM_7:-11:0.285
chr10	114129130	114129310	reg1004912.p2	7.447	+	BC113497 BC113499 AF312827 HQ258194 NM_058222	-85768	+	AL832464 BC030783 BX647451 AL833061 AL833093 NM_001244949 NM_020918 TSC_hg19_v1_chr10_-_113943538	-185715	-	AB046780 TSC_hg19_v1_chr10_-_113933602	-195659	-	AK000339 TSC_hg19_v1_chr10_+_114133781	4558	+	TSC_hg19_v1_chr10_+_114133873 NM_203379	4683	+	TSC_hg19_v1_chr10_+_114135025 NM_203380	5802	+	BC113497|TECTB|6975|tectorin beta##BC113499|TECTB|6975|tectorin beta##AF312827|TECTB|6975|tectorin beta##HQ258194|TECTB|6975|tectorin beta##NM_058222|TECTB|6975|tectorin beta##AL832464|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##BC030783|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##BX647451|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##AL833061|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##AL833093|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##NM_001244949|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##NM_020918|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##AB046780|GPAM|57678|glycerol-3-phosphate acyltransferase, mitochondrial##AK000339|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_203379|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_203380|ACSL5|51703|acyl-CoA synthetase long-chain family member 5	0.999297	0.0	
chr8	99483488	99483607	reg1003628.p1	7.447	+	BC034778 NM_020697 BC027932 TSC_hg19_v1_chr8_+_99439361 AB032970	-44201	+	BC132687 BC144055 TSC_hg19_v1_chr8_-_99306600 AK024017 NM_024759	-176948	-	BC011529 NM_015029	-353480	+	CU679773 AB528979 U60206 AK291837 TSC_hg19_v1_chr8_-_99837906 AK075229 BC010640 AK307787 AK312660 NM_006281 U26424	354300	-	NM_001142462 NM_053001 TSC_hg19_v1_chr8_+_99956669 AK074518 AK291491 AK310994 BC016936 AY038073	473110	+	AY223814 AY223815 AY223816 AY223817 AY223818 NM_015243 NM_017890 NM_152564 NM_181661 TSC_hg19_v1_chr8_+_100025498	541948	+	BC034778|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##NM_020697|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##BC027932|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##AB032970|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##BC132687|NIPAL2|79815|NIPA-like domain containing 2##BC144055|NIPAL2|79815|NIPA-like domain containing 2##AK024017|NIPAL2|79815|NIPA-like domain containing 2##NM_024759|NIPAL2|79815|NIPA-like domain containing 2##BC011529|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015029|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##U60206|STK3|6788|serine/threonine kinase 3##AK291837|STK3|6788|serine/threonine kinase 3##AK075229|STK3|6788|serine/threonine kinase 3##BC010640|STK3|6788|serine/threonine kinase 3##AK307787|STK3|6788|serine/threonine kinase 3##AK312660|STK3|6788|serine/threonine kinase 3##NM_006281|STK3|6788|serine/threonine kinase 3##U26424|STK3|6788|serine/threonine kinase 3##NM_001142462|OSR2|116039|odd-skipped related 2 (Drosophila)##NM_053001|OSR2|116039|odd-skipped related 2 (Drosophila)##AK074518|OSR2|116039|odd-skipped related 2 (Drosophila)##AK291491|OSR2|116039|odd-skipped related 2 (Drosophila)##AK310994|OSR2|116039|odd-skipped related 2 (Drosophila)##BC016936|OSR2|116039|odd-skipped related 2 (Drosophila)##AY038073|OSR2|116039|odd-skipped related 2 (Drosophila)##AY223814|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223815|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223816|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223817|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223818|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_015243|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_017890|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_152564|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_181661|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)	0.998002	0.99578	CTCF.p2:-30:0.996	denovo_WM_7:46:0.404	denovo_WM_7:47:0.410
chr9	126400334	126400482	reg1004306.p1	7.447	+	NM_173689 AK123000 DQ426866 AY720432	-281915	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-369520	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-369588	-	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	291903	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	373475	+	TSC_hg19_v1_chr9_+_126774046 BC034458	373663	+	NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC034458|LHX2|9355|LIM homeobox 2	0.0	0.0	
chr10	6177130	6177296	reg1005000.p2	7.446	+	TSC_hg19_v1_chr10_+_6131035 BC007871 BC039322 NM_001145547	-46042	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	-46214	+	TSC_hg19_v1_chr10_+_6130954 NM_032905	-46264	+	AK302518 TSC_hg19_v1_chr10_+_6186860 NM_001145443	9603	+	TSC_hg19_v1_chr10_+_6186890 AK131307	9671	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	9699	+	BC007871|RBM17|84991|RNA binding motif protein 17##BC039322|RBM17|84991|RNA binding motif protein 17##NM_001145547|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17##NM_032905|RBM17|84991|RNA binding motif protein 17##NM_001145443|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	0.991696	0.0	denovo_WM_7:-11:0.829
chr14	93539026	93539206	reg1004049.p2	7.446	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-149519	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	-149672	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	-278430	+	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	42475	-	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	43098	-	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	112084	-	AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1	0.0	0.0	
chr12	29856046	29856202	reg1004211.p1	7.445	+	NM_183378	-205506	-	TSC_hg19_v1_chr12_-_29534109 AF183410 AF216751 AF302767 BC000887 BC107794 NM_016570	-322009	-	AK222799 TSC_hg19_v1_chr12_-_29534084 AL834128	-322041	-	TSC_hg19_v1_chr12_-_29936844 GQ865601 NM_001193451	80646	-	BC042083 NM_175861	81567	-	AK302260 NM_001190995	974036	-	NM_183378|OVCH1|341350|ovochymase 1##AF183410|ERGIC2|51290|ERGIC and golgi 2##AF216751|ERGIC2|51290|ERGIC and golgi 2##AF302767|ERGIC2|51290|ERGIC and golgi 2##BC000887|ERGIC2|51290|ERGIC and golgi 2##BC107794|ERGIC2|51290|ERGIC and golgi 2##NM_016570|ERGIC2|51290|ERGIC and golgi 2##AK222799|ERGIC2|51290|ERGIC and golgi 2##AL834128|ERGIC2|51290|ERGIC and golgi 2##GQ865601|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##NM_001193451|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##BC042083|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##NM_175861|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##AK302260|IPO8|10526|importin 8##NM_001190995|IPO8|10526|importin 8	1.437076	0.0	denovo_WM_7:-39:0.837
chr18	13562636	13562794	reg1005289.p1	7.444	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-343930	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-571370	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-614651	+	NM_001003674 NM_001003675	48949	+	AF009426 AF009427 NM_004338 NM_181483	58151	+	TSC_hg19_v1_chr18_-_13726549 AK055618	163791	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr7	100157484	100157626	reg1003815.p2	7.444	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	-20648	+	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	-20744	+	AK124773 NM_173564	-76006	+	NM_001168682	13714	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	26182	-	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	26220	-	AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4	0.998858	0.977634	CTCF.p2:23:0.978
chr11	9683836	9683993	reg1006192.p1	7.443	+	AK122837 NM_001143976	-87681	+	TSC_hg19_v1_chr11_+_9595453 AB384747 EU832325 EU832410	-88447	+	BC051831 TSC_hg19_v1_chr11_+_9595437	-88481	+	TSC_hg19_v1_chr11_+_9685623 AK096859	1700	+	TSC_hg19_v1_chr11_+_9685627 NM_015055	1722	+	BC000616 TSC_hg19_v1_chr11_+_9685651 AF134894	1737	+	AK122837|WEE1|7465|WEE1 homolog (S. pombe)##NM_001143976|WEE1|7465|WEE1 homolog (S. pombe)##EU832325|WEE1|7465|WEE1 homolog (S. pombe)##EU832410|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)##AK096859|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##NM_015055|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##BC000616|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AF134894|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit	1.133645	0.0	denovo_WM_7:0:0.451	denovo_WM_7:-1:0.447
chr17	66177602	66177782	reg1002211.p1	7.443	+	TSC_hg19_v1_chr17_+_66097706 BC045718	-79994	+	TSC_hg19_v1_chr17_+_66031889 BC034443	-145804	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	-145852	+	NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_016627 TSC_hg19_v1_chr17_+_66244216 BC056271 BC050709	66488	+	TSC_hg19_v1_chr17_+_66244233 AF208856	66551	+	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	77642	+	BC045718|LOC100499466|100499466|uncharacterized LOC100499466##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_001033569|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033570|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033571|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033572|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033574|AMZ2|51321|archaelysin family metallopeptidase 2##NM_016627|AMZ2|51321|archaelysin family metallopeptidase 2##BC056271|AMZ2|51321|archaelysin family metallopeptidase 2##BC050709|AMZ2|51321|archaelysin family metallopeptidase 2##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G	1.995806	0.0	denovo_WM_7:-82:0.315	denovo_WM_7:-83:0.315	denovo_WM_7:-84:0.315
chr6	42192829	42193006	reg1001125.p3	7.443	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-7300	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-7317	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-7320	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	226906	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	338833	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	338860	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	2.177242	0.0	denovo_WM_7:-29:0.973	denovo_WM_7:37:0.346	denovo_WM_7:38:0.462
chr17	7024772	7024912	reg1005272.p1	7.442	+	X55283 TSC_hg19_v1_chr17_-_7018083 BC017251 NM_001181 NM_001201352 NM_080912 NM_080913 AK310123 AK303787	-6672	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	-6853	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	-7249	-	BC032130 TSC_hg19_v1_chr17_-_7082568	57722	-	M10058 AB070933 TSC_hg19_v1_chr17_-_7082680 AK308375 AK124286 NM_001197216 NM_001671	57926	-	TSC_hg19_v1_chr17_-_7106561 BC040533	81752	-	X55283|ASGR2|433|asialoglycoprotein receptor 2##BC017251|ASGR2|433|asialoglycoprotein receptor 2##NM_001181|ASGR2|433|asialoglycoprotein receptor 2##NM_001201352|ASGR2|433|asialoglycoprotein receptor 2##NM_080912|ASGR2|433|asialoglycoprotein receptor 2##NM_080913|ASGR2|433|asialoglycoprotein receptor 2##AK310123|ASGR2|433|asialoglycoprotein receptor 2##AK303787|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##BC032130|ASGR1|432|asialoglycoprotein receptor 1##M10058|ASGR1|432|asialoglycoprotein receptor 1##AB070933|ASGR1|432|asialoglycoprotein receptor 1##AK308375|ASGR1|432|asialoglycoprotein receptor 1##AK124286|ASGR1|432|asialoglycoprotein receptor 1##NM_001197216|ASGR1|432|asialoglycoprotein receptor 1##NM_001671|ASGR1|432|asialoglycoprotein receptor 1##BC040533|DLG4|1742|discs, large homolog 4 (Drosophila)	0.984181	0.0	denovo_WM_7:45:0.850
chr8	90629378	90629500	reg1005487.p1	7.442	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1289693	-	BC035011 AL833507 BC111778 AK093094 AX747918 NM_152418	-1743180	-	AK093121 AX747937 BC117326 BC117328 NM_173538	-2750766	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	140591	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	140845	+	AF061326 NM_004337	284656	+	AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##BC035011|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AL833507|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##BC111778|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093094|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##NM_152418|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093121|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117326|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117328|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_173538|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2	0.993583	0.069566	denovo_WM_7:-34:0.903
chr12	77157338	77157478	reg1004213.p1	7.441	+	TSC_hg19_v1_chr12_-_76953586 AF323730 AF392452 NM_001003712 NM_020841	-203800	-	TSC_hg19_v1_chr12_-_76953526 BC082235	-203877	-	BC111728 TSC_hg19_v1_chr12_-_76953484	-203925	-	TSC_hg19_v1_chr12_+_77157882 NM_015336 BC030990	454	+	TSC_hg19_v1_chr12_+_77157894 BC050324 AB023163	496	+	AB385406 CU690640 AF049612 AF161412 TSC_hg19_v1_chr12_+_77158026 AB097013 AB097035 AK292866 AK299089	618	+	AF323730|OSBPL8|114882|oxysterol binding protein-like 8##AF392452|OSBPL8|114882|oxysterol binding protein-like 8##NM_001003712|OSBPL8|114882|oxysterol binding protein-like 8##NM_020841|OSBPL8|114882|oxysterol binding protein-like 8##BC082235|OSBPL8|114882|oxysterol binding protein-like 8##BC111728|OSBPL8|114882|oxysterol binding protein-like 8##NM_015336|ZDHHC17|23390|zinc finger, DHHC-type containing 17##BC030990|ZDHHC17|23390|zinc finger, DHHC-type containing 17##BC050324|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB023163|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AF049612|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AF161412|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097013|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097035|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK292866|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK299089|ZDHHC17|23390|zinc finger, DHHC-type containing 17	1.986967	0.0	denovo_WM_7:-72:0.301	denovo_WM_7:-73:0.242	denovo_WM_7:-90:0.244	denovo_WM_7:-91:0.302
chr17	3927392	3927488	reg1005108.p2	7.439	+	AB462957 DQ893317 EU176809 Z69881 TSC_hg19_v1_chr17_-_3867744 AF068220 BC035729 AK292716 NM_005173 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958	-59739	-	NM_002558	-107481	-	X83688 U45448 BC044657 BC027949 TSC_hg19_v1_chr17_-_3819762 AK310981 AK313264 AF020498	-107692	-	AB384472 TSC_hg19_v1_chr17_-_4046240	118775	-	TSC_hg19_v1_chr17_-_4046246 AB007859 BC151836 NM_015113	118812	-	TSC_hg19_v1_chr17_-_4046308 AK127482	118870	-	DQ893317|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##EU176809|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##Z69881|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AF068220|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##BC035729|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AK292716|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_005173|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174953|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174954|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174955|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174956|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174957|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174958|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_002558|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##X83688|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##U45448|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC044657|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC027949|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AK313264|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AF020498|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AB007859|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##BC151836|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##NM_015113|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##AK127482|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1	1.835769	0.0	denovo_WM_7:47:0.772	denovo_WM_7:62:0.784
chr9	100871048	100871218	reg1003491.p3	7.439	+	TSC_hg19_v1_chr9_+_100819020 NM_018946 AK316608 BC000008 AK001659 BC019315 AF257466 CU676426 DQ892167 DQ895361	-52118	+	TSC_hg19_v1_chr9_+_100745672 Y07569	-125406	+	TSC_hg19_v1_chr9_+_100745652 BC019658 Y07570 BC013003	-125481	+	TSC_hg19_v1_chr9_-_100881503 AB529155 DQ893293 DQ896623 AF220130 AF220131 D50919 NM_014788 NM_033219 BC006333 NM_033220 AK292825	10352	-	TSC_hg19_v1_chr9_-_100881526 AK055833	10411	-	NM_003389	64040	-	NM_018946|NANS|54187|N-acetylneuraminic acid synthase##AK316608|NANS|54187|N-acetylneuraminic acid synthase##BC000008|NANS|54187|N-acetylneuraminic acid synthase##AK001659|NANS|54187|N-acetylneuraminic acid synthase##BC019315|NANS|54187|N-acetylneuraminic acid synthase##AF257466|NANS|54187|N-acetylneuraminic acid synthase##DQ892167|NANS|54187|N-acetylneuraminic acid synthase##DQ895361|NANS|54187|N-acetylneuraminic acid synthase##Y07569|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC019658|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##Y07570|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC013003|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##DQ893293|TRIM14|9830|tripartite motif containing 14##DQ896623|TRIM14|9830|tripartite motif containing 14##AF220130|TRIM14|9830|tripartite motif containing 14##AF220131|TRIM14|9830|tripartite motif containing 14##D50919|TRIM14|9830|tripartite motif containing 14##NM_014788|TRIM14|9830|tripartite motif containing 14##NM_033219|TRIM14|9830|tripartite motif containing 14##BC006333|TRIM14|9830|tripartite motif containing 14##NM_033220|TRIM14|9830|tripartite motif containing 14##AK292825|TRIM14|9830|tripartite motif containing 14##AK055833|TRIM14|9830|tripartite motif containing 14##NM_003389|CORO2A|7464|coronin, actin binding protein, 2A	0.997713	0.0	denovo_WM_7:36:0.238	denovo_WM_7:37:0.238	denovo_WM_7:38:0.238	denovo_WM_7:39:0.238
chr14	50396846	50396987	reg1002690.p2	7.437	+	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-36510	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-37083	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	-37098	+	AK091232 AX746864 NM_001012706	77321	-	AF390030 NM_001014830	162444	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	186354	-	AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D	1.134996	0.0	denovo_WM_7:39:0.868
chr1	87799543	87799691	reg1003598.p1	7.437	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-2202	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-2292	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-4936	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	1350478	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	1557594	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	1557656	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	1.55378	0.0	denovo_WM_7:14:0.349	denovo_WM_7:16:0.287	denovo_WM_7:30:0.387
chr3	60067547	60067703	reg1003918.p1	7.437	+	BC050317 TSC_hg19_v1_chr3_-_59035759	-1031865	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-1031884	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	-1031917	-	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	1169465	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	1479586	+	BC047734 TSC_hg19_v1_chr3_+_61547294	1479661	+	BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	0.968999	0.0	denovo_WM_7:19:0.775
chr7	130598524	130598655	reg1001133.p2	7.437	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-179662	-	AF294347 AF431815 BC038415 NM_052933	-227234	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-244994	-	TSC_hg19_v1_chr7_-_130792857 BC047367	194270	-	AK294384 NM_001145354	196265	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	414017	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	0.998729	0.0	denovo_WM_7:8:0.879
chr9	101925166	101925339	reg1004870.p2	7.437	+	TSC_hg19_v1_chr9_+_101867472 AB384823 EF142853 EF142854	-57773	+	TSC_hg19_v1_chr9_+_101867401 AJ619019 L11695 NM_001130916 NM_004612	-57844	+	BC071181 TSC_hg19_v1_chr9_+_101867394	-57859	+	CU676096 DQ891989 DQ895179 TSC_hg19_v1_chr9_-_101984197 BC017876 AK027417 AK074704 AB161356	58940	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	58965	-	TSC_hg19_v1_chr9_-_101984233 NM_033087	58991	-	AJ619019|TGFBR1|7046|transforming growth factor, beta receptor 1##L11695|TGFBR1|7046|transforming growth factor, beta receptor 1##NM_001130916|TGFBR1|7046|transforming growth factor, beta receptor 1##NM_004612|TGFBR1|7046|transforming growth factor, beta receptor 1##BC071181|TGFBR1|7046|transforming growth factor, beta receptor 1##DQ891989|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##DQ895179|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##BC017876|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK027417|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074704|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AB161356|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)	0.047777	0.037667	
chr11	118586201	118586357	reg1004054.p2	7.436	+	AK223140 AK309565 AK091981 AK223143 AX747289 BC109206 NM_007180 AB000824	-35912	-	NM_001144758 NM_001144759 TSC_hg19_v1_chr11_+_118478332 CR749783 BC098586 AB014538 AK295819 AL832373 AK074070 AK125783	-107902	+	AB094090 NM_015157	-109067	+	BC065007 TSC_hg19_v1_chr11_-_118661679 AK313244	75354	-	TSC_hg19_v1_chr11_-_118661835 D17532	75557	-	BC039826 TSC_hg19_v1_chr11_-_118661855	75576	-	AK223140|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK309565|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK091981|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK223143|TREH|11181|trehalase (brush-border membrane glycoprotein)##BC109206|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_007180|TREH|11181|trehalase (brush-border membrane glycoprotein)##AB000824|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_001144758|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_001144759|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##CR749783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC098586|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB014538|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK295819|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AL832373|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK074070|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK125783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC065007|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK313244|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##D17532|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC039826|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.999962	0.0	denovo_WM_7:-28:0.457	denovo_WM_7:-29:0.457
chr2	111788236	111788376	reg1005122.p1	7.436	+	AK300513 NM_001142807 BC022268	-298127	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-352484	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-352663	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	90181	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	853320	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	853455	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.10387	0.0	
chr15	99648048	99648194	reg1004582.p2	7.435	+	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	-2881	+	AK058162 NM_001167902	-97098	-	BC104743 BC104744 BC105686 NM_001102612	-99284	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	141585	-	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	143295	-	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	143521	+	BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein##AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28	1.978944	0.0	denovo_WM_7:19:0.502	denovo_WM_7:38:0.887
chr13	61626494	61626648	reg1004567.p2	7.434	+	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-655092	+	BX537910 NM_001146071 NM_030794	-655981	+	TSC_hg19_v1_chr13_-_60738096 NM_001042517	-888470	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	362682	-	AK289924 NM_022843	363083	-	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	6177933	-	EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537910|TDRD3|81550|tudor domain containing 3##NM_001146071|TDRD3|81550|tudor domain containing 3##NM_030794|TDRD3|81550|tudor domain containing 3##NM_001042517|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9	0.998423	0.0	denovo_WM_7:-6:0.457	denovo_WM_7:-7:0.457
chr2	24114932	24115061	reg1003206.p1	7.433	+	NM_052920	-506699	+	TSC_hg19_v1_chr2_-_21266940 AK290844 NM_000384 X04506 X04714	-2848067	-	TSC_hg19_v1_chr2_-_21266896 J02610 M12681	-2848097	-	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	34950	-	TSC_hg19_v1_chr2_+_24150144 BC037901	35161	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	48375	+	NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##AK290844|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_000384|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04506|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04714|APOB|338|apolipoprotein B (including Ag(x) antigen)##J02610|APOB|338|apolipoprotein B (including Ag(x) antigen)##M12681|APOB|338|apolipoprotein B (including Ag(x) antigen)##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037901|UBXN2A|165324|UBX domain protein 2A##BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A	0.990601	0.0	denovo_WM_7:44:0.504	denovo_WM_7:45:0.234
chr7	26438778	26438904	reg1004623.p1	7.432	+	TSC_hg19_v1_chr7_+_26438248 AK056484	-579	+	AK309162 NM_001199838	-34897	+	NM_001199837 AK307905	-38313	+	AK093321 AX748054 NM_001145531	238648	+	AF072166 AJ004886 AB528968 DQ892896 DQ896144 AB014486 TSC_hg19_v1_chr7_-_26904210 BC002893 AK222885 AK313209 BC036044 AF051323 NM_003930	465352	-	S79869 S79871 S79910 U37431 AB464569 CU689416 DQ890884 DQ894038 U10421 AK308067 BC032547 AK313514 NM_005522 NM_153620	696733	-	AK056484|LOC441204|441204|uncharacterized LOC441204##AK309162|SNX10|29887|sorting nexin 10##NM_001199838|SNX10|29887|sorting nexin 10##NM_001199837|SNX10|29887|sorting nexin 10##AK307905|SNX10|29887|sorting nexin 10##AK093321|C7orf71|285941|chromosome 7 open reading frame 71##NM_001145531|C7orf71|285941|chromosome 7 open reading frame 71##AF072166|SKAP2|8935|src kinase associated phosphoprotein 2##AJ004886|SKAP2|8935|src kinase associated phosphoprotein 2##DQ892896|SKAP2|8935|src kinase associated phosphoprotein 2##DQ896144|SKAP2|8935|src kinase associated phosphoprotein 2##AB014486|SKAP2|8935|src kinase associated phosphoprotein 2##BC002893|SKAP2|8935|src kinase associated phosphoprotein 2##AK222885|SKAP2|8935|src kinase associated phosphoprotein 2##AK313209|SKAP2|8935|src kinase associated phosphoprotein 2##BC036044|SKAP2|8935|src kinase associated phosphoprotein 2##AF051323|SKAP2|8935|src kinase associated phosphoprotein 2##NM_003930|SKAP2|8935|src kinase associated phosphoprotein 2##S79869|HOXA1|3198|homeobox A1##S79871|HOXA1|3198|homeobox A1##S79910|HOXA1|3198|homeobox A1##U37431|HOXA1|3198|homeobox A1##DQ890884|HOXA1|3198|homeobox A1##DQ894038|HOXA1|3198|homeobox A1##U10421|HOXA1|3198|homeobox A1##AK308067|HOXA1|3198|homeobox A1##BC032547|HOXA1|3198|homeobox A1##AK313514|HOXA1|3198|homeobox A1##NM_005522|HOXA1|3198|homeobox A1##NM_153620|HOXA1|3198|homeobox A1	0.0	0.0	
chr1	228277370	228277508	reg1004622.p1	7.431	+	TSC_hg19_v1_chr1_+_228270837 NM_001024227 NM_001024228	-6613	+	TSC_hg19_v1_chr1_+_228270448 AK130737 M36340 AF055002 M84326 AK057838 BC010429 AK296020 BC009247	-6999	+	TSC_hg19_v1_chr1_+_228270422 BC011358 AK293553 AK297792 AK057875 AF052179	-7029	+	TSC_hg19_v1_chr1_+_228285600 BC010415	8201	+	EU832643 EU832720 TSC_hg19_v1_chr1_-_228291006 BC062585 BC002843 NM_024319 AY137773	13543	-	TSC_hg19_v1_chr1_-_228291059 AK123377	13664	-	NM_001024227|ARF1|375|ADP-ribosylation factor 1##NM_001024228|ARF1|375|ADP-ribosylation factor 1##AK130737|ARF1|375|ADP-ribosylation factor 1##M36340|ARF1|375|ADP-ribosylation factor 1##AF055002|ARF1|375|ADP-ribosylation factor 1##M84326|ARF1|375|ADP-ribosylation factor 1##AK057838|ARF1|375|ADP-ribosylation factor 1##BC010429|ARF1|375|ADP-ribosylation factor 1##AK296020|ARF1|375|ADP-ribosylation factor 1##BC009247|ARF1|375|ADP-ribosylation factor 1##BC011358|ARF1|375|ADP-ribosylation factor 1##AK293553|ARF1|375|ADP-ribosylation factor 1##AK297792|ARF1|375|ADP-ribosylation factor 1##AK057875|ARF1|375|ADP-ribosylation factor 1##AF052179|ARF1|375|ADP-ribosylation factor 1##BC010415|ARF1|375|ADP-ribosylation factor 1##EU832643|C1orf35|79169|chromosome 1 open reading frame 35##EU832720|C1orf35|79169|chromosome 1 open reading frame 35##BC062585|C1orf35|79169|chromosome 1 open reading frame 35##BC002843|C1orf35|79169|chromosome 1 open reading frame 35##NM_024319|C1orf35|79169|chromosome 1 open reading frame 35##AY137773|C1orf35|79169|chromosome 1 open reading frame 35##AK123377|C1orf35|79169|chromosome 1 open reading frame 35	0.011004	0.0	
chr3	39298245	39298364	reg1004155.p1	7.430	+	BC127119 BC139782 AY375160 NM_194293 TSC_hg19_v1_chr3_-_39234085 AJ626899 AJ626900 NM_001198621 AK096421 BX648565 CR749430	-64219	-	NM_033027 TSC_hg19_v1_chr3_-_39195146	-103180	-	TSC_hg19_v1_chr3_-_39195053 BC038949 AB053121 BC028213	-103253	-	U28934 BC028078 U20350 AK307911 AK312373 AK225764 BC017855 NM_001337	23198	-	NM_001171172	23625	-	NM_001171171	24459	-	BC127119|XIRP1|165904|xin actin-binding repeat containing 1##BC139782|XIRP1|165904|xin actin-binding repeat containing 1##AY375160|XIRP1|165904|xin actin-binding repeat containing 1##NM_194293|XIRP1|165904|xin actin-binding repeat containing 1##AJ626899|XIRP1|165904|xin actin-binding repeat containing 1##AJ626900|XIRP1|165904|xin actin-binding repeat containing 1##NM_001198621|XIRP1|165904|xin actin-binding repeat containing 1##AK096421|XIRP1|165904|xin actin-binding repeat containing 1##BX648565|XIRP1|165904|xin actin-binding repeat containing 1##CR749430|XIRP1|165904|xin actin-binding repeat containing 1##NM_033027|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##BC038949|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##AB053121|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##BC028213|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##U28934|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##BC028078|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##U20350|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##AK307911|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##AK312373|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##AK225764|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##BC017855|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##NM_001337|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##NM_001171172|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1##NM_001171171|CX3CR1|1524|chemokine (C-X3-C motif) receptor 1	0.995772	0.0	denovo_WM_7:51:0.983
chr13	81857345	81857493	reg1005540.p1	7.429	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-942355	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-944377	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-1801864	+	TSC_hg19_v1_chr13_-_84456424 BC051738	2599006	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	2599081	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	4516020	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.998541	0.0	denovo_WM_7:-1:0.233	denovo_WM_7:-2:0.282	denovo_WM_7:-3:0.437
chr19	38419221	38419327	reg1004884.p1	7.429	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-21362	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-21417	+	AK302913 AY026504 AK128826 NM_031951	-22000	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	295561	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	301042	-	TSC_hg19_v1_chr19_-_38720336 AK297581	301060	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.992675	0.0	denovo_WM_7:-47:0.965
chr22	37590094	37590249	reg1004174.p2	7.429	+	CU013002 CU013290 DQ891475 DQ894663 AB462967 AF329842 CR456451 TSC_hg19_v1_chr22_-_37584282 AK314060 BC020551 NM_031910 NM_182486	-5880	-	BC025691 TSC_hg19_v1_chr22_-_37545956 AK312860 M26062 NM_000878	-44219	-	CR456446 TSC_hg19_v1_chr22_-_37505748	-84493	-	BC042068 NM_001051 AK291165	18212	-	AB463213 AF498965 BT006919 CU674734 M29871 CU013155 CU013443 DQ893288 DQ896620 EU176461 TSC_hg19_v1_chr22_-_37640247 CR456555	50050	-	TSC_hg19_v1_chr22_-_37640315 AK096924 BC001485 NM_002872	50130	-	CU013002|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##CU013290|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##DQ891475|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##DQ894663|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##AF329842|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##CR456451|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##AK314060|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##BC020551|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##NM_031910|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##NM_182486|C1QTNF6|114904|C1q and tumor necrosis factor related protein 6##BC025691|IL2RB|3560|interleukin 2 receptor, beta##AK312860|IL2RB|3560|interleukin 2 receptor, beta##M26062|IL2RB|3560|interleukin 2 receptor, beta##NM_000878|IL2RB|3560|interleukin 2 receptor, beta##CR456446|TMPRSS6|164656|transmembrane protease, serine 6##BC042068|SSTR3|6753|somatostatin receptor 3##NM_001051|SSTR3|6753|somatostatin receptor 3##AK291165|SSTR3|6753|somatostatin receptor 3##AF498965|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##BT006919|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##M29871|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CU013155|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CU013443|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##DQ893288|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##DQ896620|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##EU176461|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CR456555|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##AK096924|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##BC001485|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##NM_002872|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)	0.928395	0.0	denovo_WM_7:11:0.928
chrX	115004134	115004264	reg1000035.p1	7.429	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-176331	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-207157	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-208593	+	BC003645 TSC_hg19_v1_chrX_-_115085443	81240	-	AK313927 NM_000686 X87723 U16957	297796	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	563568	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chr14	103031774	103031917	reg1003733.p1	7.428	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-55731	-	AK291868 TSC_hg19_v1_chr14_-_102976070	-55812	-	TSC_hg19_v1_chr14_+_102829428 BC030791 AK296395 AK299690 BC142667 BC142715 AK127721	-202420	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	27153	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	27316	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	211974	+	BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##AK291868|ANKRD9|122416|ankyrin repeat domain 9##BC030791|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK296395|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK299690|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142667|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142715|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK127721|TECPR2|9895|tectonin beta-propeller repeat containing 2##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##AF155595|RCOR1|23186|REST corepressor 1##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3	0.99762	0.0	denovo_WM_7:-37:0.817
chr5	172411703	172411838	reg1004227.p2	7.428	+	TSC_hg19_v1_chr5_+_172410833 CR456856 CR542131	-926	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	-988	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	-25322	+	TSC_hg19_v1_chr5_+_172483354 BX647768 NM_001168393 NM_001168394 NM_153607 AK300043 AY139008 BC041709 AY174896 AK124117 BX647573 AK291677	71614	+	TSC_hg19_v1_chr5_+_172484383 AK297424	72613	+	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	159726	+	CR456856|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR542131|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##BX647768|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168393|C5orf41|153222|chromosome 5 open reading frame 41##NM_001168394|C5orf41|153222|chromosome 5 open reading frame 41##NM_153607|C5orf41|153222|chromosome 5 open reading frame 41##AK300043|C5orf41|153222|chromosome 5 open reading frame 41##AY139008|C5orf41|153222|chromosome 5 open reading frame 41##BC041709|C5orf41|153222|chromosome 5 open reading frame 41##AY174896|C5orf41|153222|chromosome 5 open reading frame 41##AK124117|C5orf41|153222|chromosome 5 open reading frame 41##BX647573|C5orf41|153222|chromosome 5 open reading frame 41##AK291677|C5orf41|153222|chromosome 5 open reading frame 41##AK297424|C5orf41|153222|chromosome 5 open reading frame 41##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1	0.0	0.0	
chr6	15023440	15023605	reg1003335.p2	7.426	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-905500	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-905617	+	NM_001251901	-906036	+	TSC_hg19_v1_chr6_+_15245702 AK302624	222195	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	222890	+	BC033996 TSC_hg19_v1_chr6_-_15248900	225379	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	1.185108	0.0	denovo_WM_7:-30:0.227	denovo_WM_7:-31:0.227	denovo_WM_7:-32:0.246	denovo_WM_7:-33:0.246
chr12	12377319	12377436	reg1004967.p1	7.422	+	AK074543 TSC_hg19_v1_chr12_-_12291395	-85993	-	AF281254 AF281255 NM_030766 NM_138722	-152976	+	AK292995 TSC_hg19_v1_chr12_+_12223872 BC025778 NM_138723 AK223415	-153494	+	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	42465	-	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	125795	-	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	132788	+	AK074543|LRP6|4040|low density lipoprotein receptor-related protein 6##AF281254|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281255|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_030766|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138722|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1	0.647981	0.0	denovo_WM_7:-16:0.425	denovo_WM_7:-17:0.212
chr13	103248481	103248650	reg1004097.p1	7.422	+	AB590819 BC100920 BC100921 BC100922 AY188178 NM_175929	-194490	-	NM_004115 U66200	-679571	-	TSC_hg19_v1_chr13_+_102104985 AF072752 NM_004791 AK095875 AB008375 AK297744 BC036788 AK291340 AK308194	-1143570	+	NM_003291 TSC_hg19_v1_chr13_+_103249354 BC039905 M73047 AK304313 BC024905 CU691800	771	+	HQ258371 NM_001010977 BC132748 BC132750	98293	-	NM_001146197	162856	-	BC100920|FGF14|2259|fibroblast growth factor 14##BC100921|FGF14|2259|fibroblast growth factor 14##BC100922|FGF14|2259|fibroblast growth factor 14##AY188178|FGF14|2259|fibroblast growth factor 14##NM_175929|FGF14|2259|fibroblast growth factor 14##NM_004115|FGF14|2259|fibroblast growth factor 14##U66200|FGF14|2259|fibroblast growth factor 14##AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_003291|TPP2|7174|tripeptidyl peptidase II##BC039905|TPP2|7174|tripeptidyl peptidase II##M73047|TPP2|7174|tripeptidyl peptidase II##AK304313|TPP2|7174|tripeptidyl peptidase II##BC024905|TPP2|7174|tripeptidyl peptidase II##HQ258371|METTL21C|196541|methyltransferase like 21C##NM_001010977|METTL21C|196541|methyltransferase like 21C##BC132748|METTL21C|196541|methyltransferase like 21C##BC132750|METTL21C|196541|methyltransferase like 21C##NM_001146197|CCDC168|643677|coiled-coil domain containing 168	0.200231	0.0	
chr13	60971278	60971411	reg1004431.p2	7.420	+	BX537910 NM_001146071 NM_030794	-754	+	TSC_hg19_v1_chr13_-_60738096 NM_001042517	-233243	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	-233363	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	135	+	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	1017909	-	AK289924 NM_022843	1018310	-	BX537910|TDRD3|81550|tudor domain containing 3##NM_001146071|TDRD3|81550|tudor domain containing 3##NM_030794|TDRD3|81550|tudor domain containing 3##NM_001042517|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20	1.517291	0.0	denovo_WM_7:54:0.370	denovo_WM_7:68:0.220	denovo_WM_7:69:0.554
chr6	106643628	106643778	reg1004386.p1	7.420	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	-96899	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	-109468	+	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	-109507	+	BC002699 TSC_hg19_v1_chr6_-_106773313	129605	-	TSC_hg19_v1_chr6_-_106773534 BX537904 AK315800	129829	-	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	129960	-	AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##BC002699|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BX537904|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK315800|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)	0.998754	0.0	
chr16	11380609	11380725	reg1004740.p1	7.418	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-5525	-	BC042671 X07862 AK130957 AK131573 AK292447 AK307320 AK311798 BC005303 BC066338 NM_002762	-10347	-	NM_021247	-13216	-	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	58627	+	TSC_hg19_v1_chr16_+_11439315 BC013040	58651	+	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	299520	-	BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC042671|PRM2|5620|protamine 2##X07862|PRM2|5620|protamine 2##AK130957|PRM2|5620|protamine 2##AK131573|PRM2|5620|protamine 2##AK292447|PRM2|5620|protamine 2##AK311798|PRM2|5620|protamine 2##BC005303|PRM2|5620|protamine 2##BC066338|PRM2|5620|protamine 2##NM_002762|PRM2|5620|protamine 2##NM_021247|PRM3|58531|protamine 3##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor	0.950086	0.0	denovo_WM_7:-47:0.589	denovo_WM_7:-48:0.227
chr19	15444966	15445146	reg1001900.p2	7.417	+	TSC_hg19_v1_chr19_-_15443351 BC067129 BC091649 BC035266 BC047888	-1726	-	TSC_hg19_v1_chr19_-_15443306 BC038988	-1751	-	BC000156 TSC_hg19_v1_chr19_-_15443139	-1918	-	TSC_hg19_v1_chr19_-_15490599 AK308251 AK303640 BC037270 Y11997 NM_005858	45550	-	DQ891853 DQ895043 TSC_hg19_v1_chr19_-_15529792 AB015332 AB025905 AJ243467 BC000713 AK001594 AK094736 AK225046 AK225291 AK310990	84719	-	TSC_hg19_v1_chr19_-_15529834 NM_014371 AK295956	84778	-	BC067129|BRD4|23476|bromodomain containing 4##BC091649|BRD4|23476|bromodomain containing 4##BC035266|BRD4|23476|bromodomain containing 4##BC047888|BRD4|23476|bromodomain containing 4##BC038988|BRD4|23476|bromodomain containing 4##BC000156|BRD4|23476|bromodomain containing 4##AK308251|AKAP8|10270|A kinase (PRKA) anchor protein 8##AK303640|AKAP8|10270|A kinase (PRKA) anchor protein 8##BC037270|AKAP8|10270|A kinase (PRKA) anchor protein 8##Y11997|AKAP8|10270|A kinase (PRKA) anchor protein 8##NM_005858|AKAP8|10270|A kinase (PRKA) anchor protein 8##DQ891853|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##DQ895043|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB015332|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AB025905|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AJ243467|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##BC000713|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK001594|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK094736|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225046|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK225291|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK310990|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##NM_014371|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like##AK295956|AKAP8L|26993|A kinase (PRKA) anchor protein 8-like	0.669776	0.0	denovo_WM_7:16:0.485
chr3	114173042	114173215	reg1004676.p2	7.417	+	AF139460 NM_001164342	-70640	-	EU675310 NM_173799 AK097192 BC101288 BC101289 BC101290 BC101291	-160275	+	NM_007136 X65233	-216704	-	BC029041 NM_001164347	169924	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	170666	-	AK225788 NM_001164344 NM_001164345	304992	-	AF139460|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164342|ZBTB20|26137|zinc finger and BTB domain containing 20##EU675310|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_173799|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AK097192|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101288|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101289|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101290|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101291|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_007136|ZNF80|7634|zinc finger protein 80##X65233|ZNF80|7634|zinc finger protein 80##BC029041|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164347|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20	0.931743	0.0	denovo_WM_7:-22:0.450
chr5	164566809	164566953	reg1005980.p1	7.417	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-1634238	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-1636593	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-1679286	+	HE578282 HE578283 NM_001122679	2144961	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	3151940	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	3346593	+	AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	0.999673	0.031014	denovo_WM_7:34:0.842
chr11	58239475	58239604	reg1002296.p1	7.415	+	BC136947 BC136948 NM_001004733	-31894	-	BC136923 BC136922 NM_001005566	-48756	-	NM_001005469	-68658	-	NM_001005218	36038	-	BC007490 BC019035 TSC_hg19_v1_chr11_-_58343330 AK313306 AK223165 AK301093 AF062075 NM_004811	103809	-	BC034230 TSC_hg19_v1_chr11_-_58345666 AK300955 NM_001143995 AK299264	106122	-	BC136947|OR5B12|390191|olfactory receptor, family 5, subfamily B, member 12##BC136948|OR5B12|390191|olfactory receptor, family 5, subfamily B, member 12##NM_001004733|OR5B12|390191|olfactory receptor, family 5, subfamily B, member 12##BC136923|OR5B2|390190|olfactory receptor, family 5, subfamily B, member 2##BC136922|OR5B2|390190|olfactory receptor, family 5, subfamily B, member 2##NM_001005566|OR5B2|390190|olfactory receptor, family 5, subfamily B, member 2##NM_001005469|OR5B3|441608|olfactory receptor, family 5, subfamily B, member 3##NM_001005218|OR5B21|219968|olfactory receptor, family 5, subfamily B, member 21##BC007490|LPXN|9404|leupaxin##BC019035|LPXN|9404|leupaxin##AK313306|LPXN|9404|leupaxin##AK223165|LPXN|9404|leupaxin##AK301093|LPXN|9404|leupaxin##AF062075|LPXN|9404|leupaxin##NM_004811|LPXN|9404|leupaxin##BC034230|LPXN|9404|leupaxin##AK300955|LPXN|9404|leupaxin##NM_001143995|LPXN|9404|leupaxin##AK299264|LPXN|9404|leupaxin	1.942133	0.0	denovo_WM_7:-4:0.848	denovo_WM_7:-55:0.540	denovo_WM_7:-56:0.403
chr17	76272229	76272392	reg1004860.p1	7.415	+	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-44847	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-61913	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	-62011	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	83847	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	102420	+	NM_173628	301165	-	BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17	0.923494	0.0	denovo_WM_7:-35:0.263	denovo_WM_7:-36:0.510
chrX	2440161	2440272	reg1003783.p2	7.415	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-21228	-	BC015030 NM_001171135	-21637	-	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	-706213	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	169096	+	AK304164 NM_001141919 NM_001141920 NM_175569 AF380356 AF534880 BC100764 BC100765 BC100766 BC100767 Z48517 Z48518 Z48519	229998	+	TSC_hg19_v1_chrX_+_2746813 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 U94362 AK098046 AK292496 U94363 BC023152	306686	+	BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##AK304164|XG|7499|Xg blood group##NM_001141919|XG|7499|Xg blood group##NM_001141920|XG|7499|Xg blood group##NM_175569|XG|7499|Xg blood group##AF380356|XG|7499|Xg blood group##BC100764|XG|7499|Xg blood group##BC100765|XG|7499|Xg blood group##BC100766|XG|7499|Xg blood group##BC100767|XG|7499|Xg blood group##Z48517|XG|7499|Xg blood group##Z48518|XGPY2|100132596|Xg pseudogene, Y-linked 2##Z48519|XGPY2|100132596|Xg pseudogene, Y-linked 2##NM_001079855|GYG2|8908|glycogenin 2##NM_001184702|GYG2|8908|glycogenin 2##NM_001184703|GYG2|8908|glycogenin 2##NM_001184704|GYG2|8908|glycogenin 2##NM_003918|GYG2|8908|glycogenin 2##U94362|GYG2|8908|glycogenin 2##AK098046|GYG2|8908|glycogenin 2##AK292496|GYG2|8908|glycogenin 2##U94363|GYG2|8908|glycogenin 2##BC023152|GYG2|8908|glycogenin 2	0.997714	0.0	denovo_WM_7:-51:0.235	denovo_WM_7:-52:0.238	denovo_WM_7:-53:0.239	denovo_WM_7:-54:0.241
chr12	88787336	88787441	reg1004857.p2	7.411	+	TSC_hg19_v1_chr12_+_88536083 AK290436 AK302755 AK310375 AK310393 NM_181783 CR749309 BX538169 CR749244 CR933632 AJ697717 BC117177 BC117175	-251240	+	BC043398 TSC_hg19_v1_chr12_-_88535871 AK023677 DQ109808 NM_025114	-251519	-	TSC_hg19_v1_chr12_+_88429312 AK095477 NM_001009894 CR936776 AK311222 BC058014 BX640968 BX537868 BX648026 AK311153 BC035136 BC092422 AB590923 AM392924 AL137488	-358002	+	BC074725 AK293002 AF119835 AF400437 BC126166 BC143899 BC069797 BC069733 BC069783 TSC_hg19_v1_chr12_-_88974249 AF400436 M59964 AK290319 NM_000899 NM_003994	186784	-	TSC_hg19_v1_chr12_+_89744716 AK124265	957364	+	TSC_hg19_v1_chr12_-_89745782 AB451265 AB451393 BT006895 CU678402 AB463588 DQ892490 DQ895701	958397	-	AK290436|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK302755|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310375|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310393|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##NM_181783|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749309|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BX538169|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749244|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR933632|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AJ697717|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117177|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117175|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC043398|CEP290|80184|centrosomal protein 290kDa##AK023677|CEP290|80184|centrosomal protein 290kDa##DQ109808|CEP290|80184|centrosomal protein 290kDa##NM_025114|CEP290|80184|centrosomal protein 290kDa##AK095477|C12orf29|91298|chromosome 12 open reading frame 29##NM_001009894|C12orf29|91298|chromosome 12 open reading frame 29##CR936776|C12orf29|91298|chromosome 12 open reading frame 29##AK311222|C12orf29|91298|chromosome 12 open reading frame 29##BC058014|C12orf29|91298|chromosome 12 open reading frame 29##BX640968|C12orf29|91298|chromosome 12 open reading frame 29##BX537868|C12orf29|91298|chromosome 12 open reading frame 29##BX648026|C12orf29|91298|chromosome 12 open reading frame 29##AK311153|C12orf29|91298|chromosome 12 open reading frame 29##BC035136|C12orf29|91298|chromosome 12 open reading frame 29##BC092422|C12orf29|91298|chromosome 12 open reading frame 29##AM392924|C12orf29|91298|chromosome 12 open reading frame 29##AL137488|C12orf29|91298|chromosome 12 open reading frame 29##BC074725|KITLG|4254|KIT ligand##AK293002|KITLG|4254|KIT ligand##AF119835|KITLG|4254|KIT ligand##AF400437|KITLG|4254|KIT ligand##BC126166|KITLG|4254|KIT ligand##BC143899|KITLG|4254|KIT ligand##BC069797|KITLG|4254|KIT ligand##BC069733|KITLG|4254|KIT ligand##BC069783|KITLG|4254|KIT ligand##AF400436|KITLG|4254|KIT ligand##M59964|KITLG|4254|KIT ligand##AK290319|KITLG|4254|KIT ligand##NM_000899|KITLG|4254|KIT ligand##NM_003994|KITLG|4254|KIT ligand##AK124265|LOC100131490|100131490|uncharacterized LOC100131490##AB451265|DUSP6|1848|dual specificity phosphatase 6##AB451393|DUSP6|1848|dual specificity phosphatase 6##BT006895|DUSP6|1848|dual specificity phosphatase 6##DQ892490|DUSP6|1848|dual specificity phosphatase 6##DQ895701|DUSP6|1848|dual specificity phosphatase 6	0.959246	0.243958	denovo_WM_7:14:0.581	denovo_WM_7:16:0.304	CTCF.p2:-20:0.244
chrUn_gl000227	120276	120402	reg1004581.p1	7.411	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.989051	0.0	denovo_WM_7:20:0.301	denovo_WM_7:21:0.421	denovo_WM_7:22:0.267
chr21	34576775	34576955	reg1002219.p3	7.410	+	TSC_hg19_v1_chr21_+_34444006 BC011252	-132820	+	TSC_hg19_v1_chr21_+_34442554 AB463154 DQ896828 BC026989	-134304	+	TSC_hg19_v1_chr21_+_34442446 BC033290 NM_138983 AL834450 AB209791	-134413	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	25355	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	25414	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	25537	+	BC011252|OLIG1|116448|oligodendrocyte transcription factor 1##DQ896828|OLIG1|116448|oligodendrocyte transcription factor 1##BC026989|OLIG1|116448|oligodendrocyte transcription factor 1##BC033290|OLIG1|116448|oligodendrocyte transcription factor 1##NM_138983|OLIG1|116448|oligodendrocyte transcription factor 1##AL834450|OLIG1|116448|oligodendrocyte transcription factor 1##AB209791|OLIG1|116448|oligodendrocyte transcription factor 1##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2	2.139503	0.0	denovo_WM_7:-73:0.262	denovo_WM_7:-74:0.219
chr12	47601713	47601891	reg1004245.p1	7.409	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	-128219	-	TSC_hg19_v1_chr12_+_47473404 BC072670	-128405	+	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	-382046	-	BC008360 NM_138371	8249	+	TSC_hg19_v1_chr12_+_47610379 BC016154 AK307166	8529	+	TSC_hg19_v1_chr12_-_48099790 BC056415 AK025561 AK299465	497965	-	AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##BC008360|FAM113B|91523|family with sequence similarity 113, member B##NM_138371|FAM113B|91523|family with sequence similarity 113, member B##BC016154|FAM113B|91523|family with sequence similarity 113, member B##BC056415|RPAP3|79657|RNA polymerase II associated protein 3##AK025561|RPAP3|79657|RNA polymerase II associated protein 3##AK299465|RPAP3|79657|RNA polymerase II associated protein 3	0.991624	0.0	denovo_WM_7:20:0.686
chr18	13578717	13578883	reg1004463.p2	7.407	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-360015	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-587455	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-630736	+	NM_001003674 NM_001003675	32864	+	AF009426 AF009427 NM_004338 NM_181483	42066	+	TSC_hg19_v1_chr18_-_13726549 AK055618	147706	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	1.983465	0.0	denovo_WM_7:32:0.909	denovo_WM_7:47:0.906
chr3	190142327	190142501	reg1004241.p1	7.407	+	AK314955 NM_006580	-36754	+	BC012471 AF114837 AY358652 AF101051 AF134160 AK312866 AK225963 AK296934 TSC_hg19_v1_chr3_-_190040231 NM_021101	-102200	-	NM_001134418	-302189	-	CU687168 BC071780 AY358607 NM_207316	25216	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	89463	+	NM_001146686	438050	-	AK314955|CLDN16|10686|claudin 16##NM_006580|CLDN16|10686|claudin 16##BC012471|CLDN1|9076|claudin 1##AF114837|CLDN1|9076|claudin 1##AY358652|CLDN1|9076|claudin 1##AF101051|CLDN1|9076|claudin 1##AF134160|CLDN1|9076|claudin 1##AK312866|CLDN1|9076|claudin 1##AK296934|CLDN1|9076|claudin 1##NM_021101|CLDN1|9076|claudin 1##NM_001134418|LEPREL1|55214|leprecan-like 1##BC071780|TMEM207|131920|transmembrane protein 207##AY358607|TMEM207|131920|transmembrane protein 207##NM_207316|TMEM207|131920|transmembrane protein 207##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001146686|GMNC|647309|geminin coiled-coil domain containing	0.989256	0.788126	denovo_WM_7:-10:0.377	denovo_WM_7:-13:0.471	CTCF.p2:-57:0.788
chr10	11602455	11602580	reg1003907.p1	7.406	+	NM_001080491	-28244	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-395025	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-395071	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	51119	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	181881	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	262841	+	NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47	0.107836	0.0	
chr11	105893373	105893553	reg1003692.p1	7.404	+	TSC_hg19_v1_chr11_-_105892952 AL834523 BC041118 AB058729 NM_032424	-504	-	BC015199 NM_001112812 BC146816	-412033	+	NM_000829 NM_001077243 NM_001077244 TSC_hg19_v1_chr11_+_105480799 BC045546 BC142654 BC150209 BC035610	-412574	+	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	54902	+	NM_152433 NM_198439	55001	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	995625	-	AL834523|KIAA1826|84437|KIAA1826##BC041118|KIAA1826|84437|KIAA1826##AB058729|KIAA1826|84437|KIAA1826##NM_032424|KIAA1826|84437|KIAA1826##BC015199|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001112812|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC146816|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_000829|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077243|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077244|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC045546|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC142654|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC150209|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC035610|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2	0.0	0.0	
chr15	66070746	66070876	reg1004933.p1	7.404	+	AF062922 NM_004727	-156542	+	BC012630 TSC_hg19_v1_chr15_+_65903706 AB014602 BC029407 AK304006	-167156	+	AL136662 TSC_hg19_v1_chr15_-_65903462 BC007991 AK296134 AK027475 AK301033 AK301742 AK310857 AK301222 AK293207 NM_001207058 NM_001207059	-167295	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	13662	-	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	13782	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	91036	+	AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC012630|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AB014602|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC029407|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK304006|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AL136662|C15orf44|81556|chromosome 15 open reading frame 44##BC007991|C15orf44|81556|chromosome 15 open reading frame 44##AK296134|C15orf44|81556|chromosome 15 open reading frame 44##AK027475|C15orf44|81556|chromosome 15 open reading frame 44##AK301033|C15orf44|81556|chromosome 15 open reading frame 44##AK301742|C15orf44|81556|chromosome 15 open reading frame 44##AK310857|C15orf44|81556|chromosome 15 open reading frame 44##AK301222|C15orf44|81556|chromosome 15 open reading frame 44##AK293207|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207058|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207059|C15orf44|81556|chromosome 15 open reading frame 44##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family	0.999894	0.0	denovo_WM_7:-9:0.230	denovo_WM_7:-10:0.230	denovo_WM_7:-11:0.230	denovo_WM_7:-12:0.230
chr14	73190847	73190963	reg1004058.p2	7.403	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-791039	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-791752	+	AK294895 NM_001204423	-792089	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	169903	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	202230	+	AK098542 AF311602 NM_178441	262752	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.975712	0.0	denovo_WM_7:42:0.405	denovo_WM_7:43:0.362
chr3	101109132	101109303	reg1004867.p2	7.403	+	AF173155 AB593127 NM_016247 DQ980603 DQ980602	-69795	-	CU688850 EU832117 EU832211 AK025204 AL833204 BC030221 TSC_hg19_v1_chr3_-_100712327 NM_015429	-396927	-	TSC_hg19_v1_chr3_+_100428396 BC041600 BC023599	-680753	+	AM392620 AM393440 TSC_hg19_v1_chr3_-_101232029 AK297356 BC129988 BC062674 BX537943 AL833577 AF199458 NM_001077203 NM_020654	122811	-	TSC_hg19_v1_chr3_+_101280711 BC035967 AF226052 NM_017819 AK000439 AF086243 AF155111	171500	+	AK098760 TSC_hg19_v1_chr3_+_101293023	183788	+	AF173155|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##AB593127|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##NM_016247|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##EU832117|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##EU832211|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AK025204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AL833204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC030221|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##NM_015429|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC041600|TFG|10342|TRK-fused gene##BC023599|TFG|10342|TRK-fused gene##AM392620|SENP7|57337|SUMO1/sentrin specific peptidase 7##AM393440|SENP7|57337|SUMO1/sentrin specific peptidase 7##AK297356|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC129988|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC062674|SENP7|57337|SUMO1/sentrin specific peptidase 7##BX537943|SENP7|57337|SUMO1/sentrin specific peptidase 7##AL833577|SENP7|57337|SUMO1/sentrin specific peptidase 7##AF199458|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_001077203|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_020654|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC035967|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF226052|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##NM_017819|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK000439|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF086243|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF155111|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK098760|PCNP|57092|PEST proteolytic signal containing nuclear protein	0.997847	0.0	denovo_WM_7:-23:0.912
chr4	39471230	39471358	reg1004905.p1	7.403	+	AK292238 TSC_hg19_v1_chr4_+_39460679 AK303429 NM_006859 NM_194451 AK026289 BC062751 BC023635 AK291985	-10607	+	AK130966 AK303908 AY320412 TSC_hg19_v1_chr4_-_39460532 AL832047 AY597415 AK312241 BC066318 U09953 AK297178 NM_000661	-10746	-	TSC_hg19_v1_chr4_-_39460503 BC000483	-10782	-	AB527640 CU692708 DQ891116 DQ894295 TSC_hg19_v1_chr4_-_39523141	51842	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	57713	-	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	57881	-	AK292238|LIAS|11019|lipoic acid synthetase##AK303429|LIAS|11019|lipoic acid synthetase##NM_006859|LIAS|11019|lipoic acid synthetase##NM_194451|LIAS|11019|lipoic acid synthetase##AK026289|LIAS|11019|lipoic acid synthetase##BC062751|LIAS|11019|lipoic acid synthetase##BC023635|LIAS|11019|lipoic acid synthetase##AK291985|LIAS|11019|lipoic acid synthetase##AK130966|RPL9|6133|ribosomal protein L9##AK303908|RPL9|6133|ribosomal protein L9##AY320412|RPL9|6133|ribosomal protein L9##AL832047|RPL9|6133|ribosomal protein L9##AY597415|RPL9|6133|ribosomal protein L9##AK312241|RPL9|6133|ribosomal protein L9##BC066318|RPL9|6133|ribosomal protein L9##U09953|RPL9|6133|ribosomal protein L9##AK297178|RPL9|6133|ribosomal protein L9##NM_000661|RPL9|6133|ribosomal protein L9##BC000483|RPL9|6133|ribosomal protein L9##DQ891116|UGDH|7358|UDP-glucose 6-dehydrogenase##DQ894295|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase	0.306769	0.97731	CTCF.p2:-62:0.977
chr10	90068208	90068352	reg1005190.p1	7.402	+	TSC_hg19_v1_chr10_+_89623420 U96180	-444853	+	TSC_hg19_v1_chr10_+_89623380 BC005821	-444891	+	TSC_hg19_v1_chr10_+_89623357 NM_000314 U92436	-445054	+	CU675143 BC005364 AK002080 AK296262 NM_001031709 NM_018363	274734	-	BC042900 BC031219 NM_001010939	278233	+	NM_001198828 NM_001198829 NM_001198830 NM_004190 AK301310 AK301320 AK308224 AK310128 AK312940 AK223468 AL833751 X05997	355900	+	U96180|PTEN|5728|phosphatase and tensin homolog##BC005821|PTEN|5728|phosphatase and tensin homolog##NM_000314|PTEN|5728|phosphatase and tensin homolog##U92436|PTEN|5728|phosphatase and tensin homolog##BC005364|RNLS|55328|renalase, FAD-dependent amine oxidase##AK002080|RNLS|55328|renalase, FAD-dependent amine oxidase##AK296262|RNLS|55328|renalase, FAD-dependent amine oxidase##NM_001031709|RNLS|55328|renalase, FAD-dependent amine oxidase##NM_018363|RNLS|55328|renalase, FAD-dependent amine oxidase##BC042900|LIPJ|142910|lipase, family member J##BC031219|LIPJ|142910|lipase, family member J##NM_001010939|LIPJ|142910|lipase, family member J##NM_001198828|LIPF|8513|lipase, gastric##NM_001198829|LIPF|8513|lipase, gastric##NM_001198830|LIPF|8513|lipase, gastric##NM_004190|LIPF|8513|lipase, gastric##AK301310|LIPF|8513|lipase, gastric##AK301320|LIPF|8513|lipase, gastric##AK308224|LIPF|8513|lipase, gastric##AK310128|LIPF|8513|lipase, gastric##AK312940|LIPF|8513|lipase, gastric##AK223468|LIPF|8513|lipase, gastric##AL833751|LIPF|8513|lipase, gastric##X05997|LIPF|8513|lipase, gastric	0.985147	0.0	denovo_WM_7:-78:0.331	denovo_WM_7:-79:0.327	denovo_WM_7:-80:0.327
chr22	29420196	29420335	reg1004734.p1	7.401	+	AK096397 NM_032173	-106889	+	TSC_hg19_v1_chr22_+_29279579 NM_001206998 AB051436 CR456397	-140488	+	TSC_hg19_v1_chr22_+_29196668 AF086143	-223582	+	TSC_hg19_v1_chr22_+_29449893 BC042614	29660	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	37584	-	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	48757	+	AK096397|ZNRF3|84133|zinc and ring finger 3##NM_032173|ZNRF3|84133|zinc and ring finger 3##NM_001206998|ZNRF3|84133|zinc and ring finger 3##AB051436|ZNRF3|84133|zinc and ring finger 3##CR456397|ZNRF3|84133|zinc and ring finger 3##BC042614|ZNRF3|84133|zinc and ring finger 3##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1	0.987571	0.0	denovo_WM_7:12:0.216	denovo_WM_7:13:0.749
chr11	64085178	64085302	reg1004665.p1	7.400	+	TSC_hg19_v1_chr11_-_64085009 AK312050 DQ892261 DQ895463 BC105294 BC029482 BC017172 AF161501 AF229068 NM_016404	-219	-	TSC_hg19_v1_chr11_+_64073040 L38487 NM_004451 BC063795 BC073956	-12172	+	AL117564 NM_001039496 AM392988 AB590987	-17369	+	BC110983 NM_012094 NM_181651 NM_181652 TSC_hg19_v1_chr11_+_64085600 AF197952	339	+	TSC_hg19_v1_chr11_+_64085676 AF124993 AF110731 BC113723 BC113725 BC143849 BC171733 AF112212 AF242525 AF231705 CR457203 HQ258129 AJ249483	482	+	TSC_hg19_v1_chr11_+_64107692 BC151218 BC151222 NM_032251 AK090436 BC140822 BC140824 BC141866	22462	+	AK312050|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ892261|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ895463|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC105294|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC029482|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC017172|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF161501|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF229068|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##NM_016404|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##L38487|ESRRA|2101|estrogen-related receptor alpha##NM_004451|ESRRA|2101|estrogen-related receptor alpha##BC063795|ESRRA|2101|estrogen-related receptor alpha##BC073956|ESRRA|2101|estrogen-related receptor alpha##AL117564|C11orf20|25858|chromosome 11 open reading frame 20##NM_001039496|C11orf20|25858|chromosome 11 open reading frame 20##AM392988|C11orf20|25858|chromosome 11 open reading frame 20##BC110983|PRDX5|25824|peroxiredoxin 5##NM_012094|PRDX5|25824|peroxiredoxin 5##NM_181651|PRDX5|25824|peroxiredoxin 5##NM_181652|PRDX5|25824|peroxiredoxin 5##AF197952|PRDX5|25824|peroxiredoxin 5##AF124993|PRDX5|25824|peroxiredoxin 5##AF110731|PRDX5|25824|peroxiredoxin 5##BC113723|PRDX5|25824|peroxiredoxin 5##BC113725|PRDX5|25824|peroxiredoxin 5##BC143849|PRDX5|25824|peroxiredoxin 5##BC171733|PRDX5|25824|peroxiredoxin 5##AF112212|PRDX5|25824|peroxiredoxin 5##AF242525|PRDX5|25824|peroxiredoxin 5##AF231705|PRDX5|25824|peroxiredoxin 5##CR457203|PRDX5|25824|peroxiredoxin 5##HQ258129|PRDX5|25824|peroxiredoxin 5##AJ249483|PRDX5|25824|peroxiredoxin 5##BC151218|CCDC88B|283234|coiled-coil domain containing 88B##BC151222|CCDC88B|283234|coiled-coil domain containing 88B##NM_032251|CCDC88B|283234|coiled-coil domain containing 88B##AK090436|CCDC88B|283234|coiled-coil domain containing 88B##BC140822|CCDC88B|283234|coiled-coil domain containing 88B##BC140824|CCDC88B|283234|coiled-coil domain containing 88B##BC141866|CCDC88B|283234|coiled-coil domain containing 88B	0.0	0.0	
chr19	2090563	2090727	reg1005273.p2	7.400	+	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	-5402	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-39412	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-44404	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	5620	-	TSC_hg19_v1_chr19_-_2096297 AL832474	5649	-	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	6215	+	AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4	0.968475	0.0	denovo_WM_7:28:0.256	denovo_WM_7:29:0.700
chr13	107220589	107220734	reg1004529.p1	7.399	+	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	-176	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	-33312	-	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-1102070	+	NM_001080396	1298798	-	NM_002312 X83441	1646468	-	AK292419 AK314844 BC037491 NM_206937	1647214	-	BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A##NM_002312|LIG4|3981|ligase IV, DNA, ATP-dependent##X83441|LIG4|3981|ligase IV, DNA, ATP-dependent##AK292419|LIG4|3981|ligase IV, DNA, ATP-dependent##AK314844|LIG4|3981|ligase IV, DNA, ATP-dependent##BC037491|LIG4|3981|ligase IV, DNA, ATP-dependent##NM_206937|LIG4|3981|ligase IV, DNA, ATP-dependent	0.992075	0.0	denovo_WM_7:13:0.685	denovo_WM_7:14:0.255
chr5	167646822	167646976	reg1004708.p1	7.397	+	HE578282 HE578283 NM_001122679	-935057	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-4714256	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-4716611	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	71922	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	266575	+	TSC_hg19_v1_chr5_+_167956546 AX721195	309718	+	NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	0.9996	0.983511	CTCF.p2:76:0.984
chr12	123201369	123201506	reg1004071.p1	7.396	+	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-59	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-13565	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-189633	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	13568	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	35954	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	57664	+	AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62	0.999894	0.0	denovo_WM_7:15:0.230	denovo_WM_7:16:0.230	denovo_WM_7:17:0.230	denovo_WM_7:18:0.230
chr14	53416055	53416235	reg1004812.p1	7.396	+	TSC_hg19_v1_chr14_-_53258376 NM_198066	-157760	-	TSC_hg19_v1_chr14_-_53258326 BC012179 AK090577	-157909	-	TSC_hg19_v1_chr14_+_53196923 BX647636 BC020265 BC146995 BC146998	-219188	+	TSC_hg19_v1_chr14_-_53417272 EU979385 CU675940 EU831994 EU832087	1134	-	Z24725 AF443279 TSC_hg19_v1_chr14_-_53417769 BX161467 AK291738	1575	-	TSC_hg19_v1_chr14_-_53417903 BC017327 NM_001134999 NM_001135000 NM_006832	1722	-	NM_198066|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##BC012179|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##AK090577|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##BX647636|STYX|6815|serine/threonine/tyrosine interacting protein##BC020265|STYX|6815|serine/threonine/tyrosine interacting protein##BC146995|STYX|6815|serine/threonine/tyrosine interacting protein##BC146998|STYX|6815|serine/threonine/tyrosine interacting protein##EU979385|FERMT2|10979|fermitin family member 2##EU831994|FERMT2|10979|fermitin family member 2##EU832087|FERMT2|10979|fermitin family member 2##Z24725|FERMT2|10979|fermitin family member 2##AF443279|FERMT2|10979|fermitin family member 2##BX161467|FERMT2|10979|fermitin family member 2##AK291738|FERMT2|10979|fermitin family member 2##BC017327|FERMT2|10979|fermitin family member 2##NM_001134999|FERMT2|10979|fermitin family member 2##NM_001135000|FERMT2|10979|fermitin family member 2##NM_006832|FERMT2|10979|fermitin family member 2	1.130302	0.0	denovo_WM_7:-39:0.559
chr7	23223152	23223332	reg1001278.p1	7.396	+	NM_007342 AK312991 U97198 TSC_hg19_v1_chr7_+_23221673 BC005327 AK300113 BC107583 BT007409 CU675113 AK298183	-1664	+	NM_018846	-77326	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	-77718	+	TSC_hg19_v1_chr7_+_23286300 AK304671 NM_001005340 NM_002510	63054	+	AK297051 TSC_hg19_v1_chr7_+_23286384 X76534	63142	+	AK297055 AK303071 AK312279 TSC_hg19_v1_chr7_+_23286386	63144	+	NM_007342|NUPL2|11097|nucleoporin like 2##AK312991|NUPL2|11097|nucleoporin like 2##U97198|NUPL2|11097|nucleoporin like 2##BC005327|NUPL2|11097|nucleoporin like 2##AK300113|NUPL2|11097|nucleoporin like 2##BC107583|NUPL2|11097|nucleoporin like 2##BT007409|NUPL2|11097|nucleoporin like 2##AK298183|NUPL2|11097|nucleoporin like 2##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##AK304671|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_001005340|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_002510|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297051|GPNMB|10457|glycoprotein (transmembrane) nmb##X76534|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297055|GPNMB|10457|glycoprotein (transmembrane) nmb##AK303071|GPNMB|10457|glycoprotein (transmembrane) nmb##AK312279|GPNMB|10457|glycoprotein (transmembrane) nmb	0.0	0.0	
chr5	112286841	112287004	reg1004242.p1	7.395	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	-28935	-	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	-89898	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	-89993	+	TSC_hg19_v1_chr5_+_112312407 NM_001242377 NM_152624	25483	+	TSC_hg19_v1_chr5_+_112312506 AY135173 AY146650 BC017965 AK296361 AK090564 AX746512 BC064593 BC068042 CU687920	25606	+	M62397 AK096212 TSC_hg19_v1_chr5_-_112630346	343403	-	AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##NM_001242377|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##NM_152624|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY135173|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY146650|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC017965|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK296361|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK090564|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC064593|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC068042|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##M62397|MCC|4163|mutated in colorectal cancers##AK096212|MCC|4163|mutated in colorectal cancers	0.999931	0.0	
chr14	103567158	103567328	reg1003777.p2	7.394	+	BC113655 BC117375 NM_001077594 HQ258590	-725	+	BC047871 BC048261 TSC_hg19_v1_chr14_-_103523736 AB032950 BC155541 NM_006035 BC078666 AF128625	-43506	-	AB384568 TSC_hg19_v1_chr14_-_103523568	-43702	-	TSC_hg19_v1_chr14_+_103589771 BC017818	22502	+	M92357 NM_006291 BC128449 BC128450 TSC_hg19_v1_chr14_+_103592873	25525	+	NM_001969 TSC_hg19_v1_chr14_+_103800527	233267	+	BC113655|EXOC3L4|91828|exocyst complex component 3-like 4##BC117375|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001077594|EXOC3L4|91828|exocyst complex component 3-like 4##HQ258590|EXOC3L4|91828|exocyst complex component 3-like 4##BC047871|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC048261|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##AB032950|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC155541|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##NM_006035|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##AF128625|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC017818|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##M92357|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_006291|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128449|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128450|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_001969|EIF5|1983|eukaryotic translation initiation factor 5	0.993792	0.0	denovo_WM_7:4:0.248	denovo_WM_7:5:0.248	denovo_WM_7:6:0.248	denovo_WM_7:7:0.248
chr17	34444978	34445142	reg1005093.p1	7.394	+	AY766446 AY766448 NM_002984 BC107433 M23502 BC104226 BC104227 M25316 X53683 BC027961 X16166 AY312578 CR542119 M57503	-13793	+	D63785 AB463487 BC171831 BC171891 BC071834 M25315 D00044 M23452 X03754 NM_002983	-27615	-	AB000221 NM_002988 Y13710 BC096124 BC096125 BC096126 BC096127 BC069700 AB590849 AB451458 CR407660	-53390	+	BC033670 AK301823 BC071680 AK225985 AK292257 NM_001001417	58890	-	D63785 BT006783 BC146914 BC146919 BC147008 BC147013 BC007783 X52149 BC027888 BC063472 NM_001001437 NM_021006 BC107710	79045	-	AY766447 AY766449 AY766450 AY766451 AY766452 AY766453 AY766454 AY766455 AY766456 AY766457 AY766458 BC070310 BC092445 NM_001001435 NM_207007 BC071718 BC130456 BC130458 BC144393 BC144394 HQ258694	93442	+	AY766446|CCL4|6351|chemokine (C-C motif) ligand 4##AY766448|CCL4|6351|chemokine (C-C motif) ligand 4##NM_002984|CCL4|6351|chemokine (C-C motif) ligand 4##BC107433|CCL4|6351|chemokine (C-C motif) ligand 4##M23502|CCL4|6351|chemokine (C-C motif) ligand 4##BC104226|CCL4|6351|chemokine (C-C motif) ligand 4##BC104227|CCL4|6351|chemokine (C-C motif) ligand 4##M25316|CCL4|6351|chemokine (C-C motif) ligand 4##X53683|CCL4|6351|chemokine (C-C motif) ligand 4##BC027961|CCL4|6351|chemokine (C-C motif) ligand 4##X16166|CCL4|6351|chemokine (C-C motif) ligand 4##AY312578|CCL4|6351|chemokine (C-C motif) ligand 4##CR542119|CCL4|6351|chemokine (C-C motif) ligand 4##M57503|CCL4|6351|chemokine (C-C motif) ligand 4##D63785|CCL3|6348|chemokine (C-C motif) ligand 3##BC171831|CCL3|6348|chemokine (C-C motif) ligand 3##BC171891|CCL3|6348|chemokine (C-C motif) ligand 3##BC071834|CCL3|6348|chemokine (C-C motif) ligand 3##M25315|CCL3|6348|chemokine (C-C motif) ligand 3##D00044|CCL3|6348|chemokine (C-C motif) ligand 3##M23452|CCL3|6348|chemokine (C-C motif) ligand 3##X03754|CCL3|6348|chemokine (C-C motif) ligand 3##NM_002983|CCL3|6348|chemokine (C-C motif) ligand 3##AB000221|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##NM_002988|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##Y13710|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096124|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096125|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096126|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096127|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC069700|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##AB451458|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##CR407660|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK225985|TBC1D3G|654341|TBC1 domain family, member 3G##AK292257|TBC1D3B|414059|TBC1 domain family, member 3B##NM_001001417|TBC1D3B|414059|TBC1 domain family, member 3B##D63785|CCL3|6348|chemokine (C-C motif) ligand 3##BT006783|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC146914|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC146919|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC147008|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC147013|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC007783|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##X52149|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC027888|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC063472|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##NM_001001437|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##NM_021006|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC107710|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##AY766447|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766449|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766450|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766451|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766452|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766453|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766454|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766455|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766456|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766457|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##AY766458|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##BC070310|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##BC092445|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##NM_001001435|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##NM_207007|CCL4L2|388372|chemokine (C-C motif) ligand 4-like 2##BC130456|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##BC130458|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##BC144393|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##BC144394|CCL4L1|9560|chemokine (C-C motif) ligand 4-like 1##HQ258694|CCL4L2|388372|chemokine (C-C motif) ligand 4-like 2	0.995041	0.0	
chr19	18503285	18503404	reg1005160.p1	7.393	+	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	-6362	+	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	-51937	+	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	-69378	-	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	5076	-	TSC_hg19_v1_chr19_+_18530163 NM_001009998 NM_032627	26783	+	TSC_hg19_v1_chr19_+_18530224 BC000274 AK098429	26881	+	AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25##NM_001009998|SSBP4|170463|single stranded DNA binding protein 4##NM_032627|SSBP4|170463|single stranded DNA binding protein 4##BC000274|SSBP4|170463|single stranded DNA binding protein 4##AK098429|SSBP4|170463|single stranded DNA binding protein 4	0.99461	0.0	denovo_WM_7:-27:0.788
chr20	46095999	46096135	reg1004752.p1	7.391	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-110579	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-119420	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-168498	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	34555	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	34617	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	318685	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.9978	0.0	denovo_WM_7:15:0.890
chr18	57510652	57510813	reg1004432.p2	7.390	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-146082	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-146141	-	TSC_hg19_v1_chr18_-_57026487 DQ891254 DQ894440 U09716 AK223208 AK225108 AK312869 BC008401 BC032330 BC017858 X71661 AK301244 NM_005570	-484246	-	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	56497	+	AK314130 NM_005912	529268	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1647042	+	NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##DQ891254|LMAN1|3998|lectin, mannose-binding, 1##DQ894440|LMAN1|3998|lectin, mannose-binding, 1##U09716|LMAN1|3998|lectin, mannose-binding, 1##AK223208|LMAN1|3998|lectin, mannose-binding, 1##AK225108|LMAN1|3998|lectin, mannose-binding, 1##AK312869|LMAN1|3998|lectin, mannose-binding, 1##BC008401|LMAN1|3998|lectin, mannose-binding, 1##BC032330|LMAN1|3998|lectin, mannose-binding, 1##BC017858|LMAN1|3998|lectin, mannose-binding, 1##X71661|LMAN1|3998|lectin, mannose-binding, 1##AK301244|LMAN1|3998|lectin, mannose-binding, 1##NM_005570|LMAN1|3998|lectin, mannose-binding, 1##NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2	1.785306	0.0	denovo_WM_7:-24:0.422	denovo_WM_7:-25:0.280	denovo_WM_7:-39:0.430	denovo_WM_7:-40:0.246	denovo_WM_7:-41:0.217
chr20	3973878	3973985	reg1004864.p2	7.390	+	NM_153640 BC107724 BC065019	-103442	+	TSC_hg19_v1_chr20_+_3870042 AK310190 AK097796 BC142976 BC009421	-103875	+	TSC_hg19_v1_chr20_-_3869721 BC005095 BC012193	-104213	-	AL096778 NM_007219 BC039584 TSC_hg19_v1_chr20_-_3996221 BC000213 BC003141 NM_001134337 NM_001134338 BC032738	22234	-	TSC_hg19_v1_chr20_+_4129438 NM_175839 NM_175840 NM_175841 NM_175842	155504	+	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	155592	+	NM_153640|PANK2|80025|pantothenate kinase 2##BC107724|PANK2|80025|pantothenate kinase 2##BC065019|PANK2|80025|pantothenate kinase 2##AK310190|PANK2|80025|pantothenate kinase 2##AK097796|PANK2|80025|pantothenate kinase 2##BC142976|PANK2|80025|pantothenate kinase 2##BC009421|PANK2|80025|pantothenate kinase 2##AL096778|RNF24|11237|ring finger protein 24##NM_007219|RNF24|11237|ring finger protein 24##BC039584|RNF24|11237|ring finger protein 24##BC000213|RNF24|11237|ring finger protein 24##NM_001134337|RNF24|11237|ring finger protein 24##NM_001134338|RNF24|11237|ring finger protein 24##NM_175839|SMOX|54498|spermine oxidase##NM_175840|SMOX|54498|spermine oxidase##NM_175841|SMOX|54498|spermine oxidase##NM_175842|SMOX|54498|spermine oxidase##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase	0.46805	0.0	denovo_WM_7:15:0.439
chr3	32539342	32539463	reg1004636.p1	7.388	+	TSC_hg19_v1_chr3_+_32433370 BC010116 AY174113 DQ132881 AK308878	-105999	+	TSC_hg19_v1_chr3_+_32433162 AF479263 NM_138410 NM_181472 AL832450	-106233	+	TSC_hg19_v1_chr3_+_32280215 BC041390	-259183	+	CR457231 TSC_hg19_v1_chr3_-_32544290	4870	-	TSC_hg19_v1_chr3_-_32544335 AK000403	4931	-	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	4978	-	BC010116|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AY174113|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##DQ132881|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AK308878|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AF479263|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_138410|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_181472|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AL832450|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##BC041390|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6	0.998858	0.0	denovo_WM_7:-43:0.314	denovo_WM_7:-44:0.314	denovo_WM_7:-45:0.314
chr10	6093123	6093303	reg1000979.p2	7.387	+	AF035279 BC107777 BC065506 NM_001243539	-73199	-	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	-73700	-	AF380349 NM_032807	-156865	+	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	11009	-	TSC_hg19_v1_chr10_+_6130954 NM_032905	37736	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	37786	+	AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##AF380349|FBXO18|84893|F-box protein, helicase, 18##NM_032807|FBXO18|84893|F-box protein, helicase, 18##AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha##NM_032905|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17	0.0	0.0	
chr14	51258119	51258289	reg1003811.p1	7.386	+	TSC_hg19_v1_chr14_-_51135048 AK225896 AK095903	-123136	-	BC020537 TSC_hg19_v1_chr14_-_51135025 BC006385 NM_021818 AK021500	-123178	-	AJ292969 AK023071 TSC_hg19_v1_chr14_-_51135016 AK290883	-123264	-	AB046785 TSC_hg19_v1_chr14_-_51297860 BC065521 AF223937 AF223938 AF223939 AF302773 AY736182 NM_016350 NM_020921 NM_182944 NM_182946	39616	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	80674	+	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	152978	-	AK225896|SAV1|60485|salvador homolog 1 (Drosophila)##AK095903|SAV1|60485|salvador homolog 1 (Drosophila)##BC020537|SAV1|60485|salvador homolog 1 (Drosophila)##BC006385|SAV1|60485|salvador homolog 1 (Drosophila)##NM_021818|SAV1|60485|salvador homolog 1 (Drosophila)##AK021500|SAV1|60485|salvador homolog 1 (Drosophila)##AJ292969|SAV1|60485|salvador homolog 1 (Drosophila)##AK023071|SAV1|60485|salvador homolog 1 (Drosophila)##AK290883|SAV1|60485|salvador homolog 1 (Drosophila)##AB046785|NIN|51199|ninein (GSK3B interacting protein)##BC065521|NIN|51199|ninein (GSK3B interacting protein)##AF223937|NIN|51199|ninein (GSK3B interacting protein)##AF223938|NIN|51199|ninein (GSK3B interacting protein)##AF223939|NIN|51199|ninein (GSK3B interacting protein)##AF302773|NIN|51199|ninein (GSK3B interacting protein)##AY736182|NIN|51199|ninein (GSK3B interacting protein)##NM_016350|NIN|51199|ninein (GSK3B interacting protein)##NM_020921|NIN|51199|ninein (GSK3B interacting protein)##NM_182944|NIN|51199|ninein (GSK3B interacting protein)##NM_182946|NIN|51199|ninein (GSK3B interacting protein)##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver	0.881255	0.0	denovo_WM_7:-30:0.857
chr2	102371890	102372070	reg1000771.p1	7.386	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-57628	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-280787	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-367991	-	TSC_hg19_v1_chr2_+_102508334 BC045694	136362	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	136552	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	236383	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.0	0.0	
chr3	13460422	13460602	reg1004265.p2	7.386	+	AB020713 TSC_hg19_v1_chr3_-_13384784	-75747	-	TSC_hg19_v1_chr3_-_13114618 AK294525 NM_001134382	-345914	-	TSC_hg19_v1_chr3_-_13057189 BC071805	-403294	-	AB384541 TSC_hg19_v1_chr3_-_13461731 BC067089	1220	-	TSC_hg19_v1_chr3_-_13461832 BC020573 NM_024923	1305	-	NM_024827 TSC_hg19_v1_chr3_+_13521806 AK299021 AK025426 AK025890 BC009676 NM_001136041 AK293223	61300	+	AB020713|NUP210|23225|nucleoporin 210kDa##AK294525|IQSEC1|9922|IQ motif and Sec7 domain 1##NM_001134382|IQSEC1|9922|IQ motif and Sec7 domain 1##BC067089|NUP210|23225|nucleoporin 210kDa##BC020573|NUP210|23225|nucleoporin 210kDa##NM_024923|NUP210|23225|nucleoporin 210kDa##NM_024827|HDAC11|79885|histone deacetylase 11##AK299021|HDAC11|79885|histone deacetylase 11##AK025426|HDAC11|79885|histone deacetylase 11##AK025890|HDAC11|79885|histone deacetylase 11##BC009676|HDAC11|79885|histone deacetylase 11##NM_001136041|HDAC11|79885|histone deacetylase 11##AK293223|HDAC11|79885|histone deacetylase 11	1.942206	0.0	denovo_WM_7:-40:0.953	denovo_WM_7:-55:0.963
chr2	225386079	225386223	reg1002709.p1	7.383	+	U58089 TSC_hg19_v1_chr2_-_225378353	-7815	-	AF052147 BC031844 TSC_hg19_v1_chr2_-_225370764	-15423	-	BC025754 NM_001122779 NM_024785 AK026399	-119421	-	AK299644 AK291151 AF064087 AF062537 TSC_hg19_v1_chr2_-_225449842	63632	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	63890	-	TSC_hg19_v1_chr2_-_225450056 BC039598	63924	-	U58089|CUL3|8452|cullin 3##AF052147|CUL3|8452|cullin 3##BC031844|CUL3|8452|cullin 3##BC025754|FAM124B|79843|family with sequence similarity 124B##NM_001122779|FAM124B|79843|family with sequence similarity 124B##NM_024785|FAM124B|79843|family with sequence similarity 124B##AK026399|FAM124B|79843|family with sequence similarity 124B##AK299644|CUL3|8452|cullin 3##AK291151|CUL3|8452|cullin 3##AF064087|CUL3|8452|cullin 3##AF062537|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3	0.995633	0.0	denovo_WM_7:7:0.815
chr10	120880236	120880416	reg1001611.p4	7.381	+	TSC_hg19_v1_chr10_+_120863628 AF168713 AK000031 AK297633 AK297971 AK293136 BC022271 CU687018 CU692524	-16686	+	NM_207009 TSC_hg19_v1_chr10_+_120863621	-16709	+	TSC_hg19_v1_chr10_+_120863593 AK293365	-16746	+	CU687762 AY269785 TSC_hg19_v1_chr10_-_120925213 AK095295 BC063562 BC050475 NM_213649	44861	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	57977	-	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	58021	-	AF168713|FAM45A|404636|family with sequence similarity 45, member A##AK000031|FAM45A|404636|family with sequence similarity 45, member A##AK297633|FAM45A|404636|family with sequence similarity 45, member A##AK297971|FAM45B|55855|family with sequence similarity 45, member A pseudogene##AK293136|FAM45A|404636|family with sequence similarity 45, member A##BC022271|FAM45A|404636|family with sequence similarity 45, member A##NM_207009|FAM45A|404636|family with sequence similarity 45, member A##AK293365|FAM45A|404636|family with sequence similarity 45, member A##AY269785|SFXN4|119559|sideroflexin 4##AK095295|SFXN4|119559|sideroflexin 4##BC063562|SFXN4|119559|sideroflexin 4##BC050475|SFXN4|119559|sideroflexin 4##NM_213649|SFXN4|119559|sideroflexin 4##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3	0.979944	0.0	denovo_WM_7:89:0.962
chr16	29621909	29622044	reg1000608.p1	7.381	+	TSC_hg19_v1_chr16_-_29606667 AK316536	-15303	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-15631	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-150750	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	3066	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	52356	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	52589	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin	0.905942	0.0	denovo_WM_7:31:0.690
chr18	33640373	33640473	reg1003479.p1	7.381	+	NM_001201474 NM_001201475 NM_001201476 NM_031446 BC108730 TSC_hg19_v1_chr18_+_33552656 BC119765 BC119766 AK311536 AF277182 AF277189 BC025950	-87756	+	NM_020474 BC047746 U41514 AB529022 X85018	-405844	+	AK095502 AK300660 BC039404 NM_001098817 NM_194281	-562498	-	TSC_hg19_v1_chr18_-_33647515 DQ892910 EU176720 AF419845 NM_018170 BC000225 AK314569	7004	-	BC010136 TSC_hg19_v1_chr18_-_33647520	7096	-	AK001518 AK292907 TSC_hg19_v1_chr18_-_33647523	7129	-	NM_001201474|C18orf21|83608|chromosome 18 open reading frame 21##NM_001201475|C18orf21|83608|chromosome 18 open reading frame 21##NM_001201476|C18orf21|83608|chromosome 18 open reading frame 21##NM_031446|C18orf21|83608|chromosome 18 open reading frame 21##BC108730|C18orf21|83608|chromosome 18 open reading frame 21##BC119765|C18orf21|83608|chromosome 18 open reading frame 21##BC119766|C18orf21|83608|chromosome 18 open reading frame 21##AF277182|C18orf21|83608|chromosome 18 open reading frame 21##AF277189|C18orf21|83608|chromosome 18 open reading frame 21##BC025950|C18orf21|83608|chromosome 18 open reading frame 21##NM_020474|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##BC047746|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##U41514|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##X85018|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##AK095502|INO80C|125476|INO80 complex subunit C##AK300660|INO80C|125476|INO80 complex subunit C##BC039404|INO80C|125476|INO80 complex subunit C##NM_001098817|INO80C|125476|INO80 complex subunit C##NM_194281|INO80C|125476|INO80 complex subunit C##DQ892910|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##EU176720|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##AF419845|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##NM_018170|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##BC000225|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##AK314569|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##BC010136|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##AK001518|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##AK292907|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A	0.990553	0.0	denovo_WM_7:-18:0.974
chr5	92899807	92899982	reg1004343.p1	7.381	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	-2220762	-	TSC_hg19_v1_chr5_+_90676181 BC043415	-2223732	+	AK091866 TSC_hg19_v1_chr5_-_90610220	-2289649	-	AK311143 BC042879 TSC_hg19_v1_chr5_-_92916977 BC010610 BC018089 AK095719	17069	-	TSC_hg19_v1_chr5_+_92918927 BC017493 NM_005654	19089	+	TSC_hg19_v1_chr5_+_92920609 BC004154 AB463944 HQ709180 HQ709181 HQ709182 HQ709183 X16155	20774	+	BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##AK311143|FLJ42709|441094|uncharacterized LOC441094##BC042879|FLJ42709|441094|uncharacterized LOC441094##BC010610|FLJ42709|441094|uncharacterized LOC441094##BC018089|FLJ42709|441094|uncharacterized LOC441094##AK095719|FLJ42709|441094|uncharacterized LOC441094##BC017493|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##NM_005654|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##BC004154|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709180|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709181|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##HQ709182|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709183|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##X16155|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1	2.980661	0.0	denovo_WM_7:-45:0.420	denovo_WM_7:-46:0.280	denovo_WM_7:-61:0.227	denovo_WM_7:-62:0.254	denovo_WM_7:-63:0.226	denovo_WM_7:-78:0.284	denovo_WM_7:-79:0.425
chr1	28415350	28415491	reg1003940.p1	7.380	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-296	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-128902	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-153859	+	NM_000952 NM_001164723	88034	-	S52624 AK292053 NM_001164721 NM_001164722	104992	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	144111	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.035562	0.0	
chr13	111124343	111124458	reg1004426.p2	7.380	+	TSC_hg19_v1_chr13_+_110959631 AK294920 NM_001846 X05562	-164779	+	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	-164891	-	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	-321665	-	BX648393 TSC_hg19_v1_chr13_+_111134980	10558	+	AK025912 TSC_hg19_v1_chr13_+_111137262	12864	+	TSC_hg19_v1_chr13_+_111138079 M24766	13688	+	AK294920|COL4A2|1284|collagen, type IV, alpha 2##NM_001846|COL4A2|1284|collagen, type IV, alpha 2##X05562|COL4A2|1284|collagen, type IV, alpha 2##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BX648393|COL4A2|1284|collagen, type IV, alpha 2##AK025912|COL4A2|1284|collagen, type IV, alpha 2##M24766|COL4A2|1284|collagen, type IV, alpha 2	0.992762	0.0	denovo_WM_7:67:0.381
chr6	15421557	15421707	reg1005202.p1	7.380	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-172519	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-172731	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-175220	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	241545	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	241658	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	707670	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.99042	0.0	denovo_WM_7:17:0.814
chr17	19896207	19896317	reg1004137.p2	7.379	+	TSC_hg19_v1_chr17_-_19881144 AK295180	-15104	-	AB590263 CU677815 DQ270159 DQ891477 DQ894666 TSC_hg19_v1_chr17_-_19881134 AK312438 BC017055 AF037439 NM_007202	-15200	-	TSC_hg19_v1_chr17_-_19771250 BC034988 AB014523 NM_001142610 NM_014683 BC039310	-125119	-	TSC_hg19_v1_chr17_+_19912678 AK094274 NM_001243439 AK295093	16406	+	TSC_hg19_v1_chr17_+_19976949 AK314341	80640	+	AY816328 AY816329 NM_001033553 NM_152904 AB041533	94072	+	AK295180|AKAP10|11216|A kinase (PRKA) anchor protein 10##DQ270159|AKAP10|11216|A kinase (PRKA) anchor protein 10##DQ891477|AKAP10|11216|A kinase (PRKA) anchor protein 10##DQ894666|AKAP10|11216|A kinase (PRKA) anchor protein 10##AK312438|AKAP10|11216|A kinase (PRKA) anchor protein 10##BC017055|AKAP10|11216|A kinase (PRKA) anchor protein 10##AF037439|AKAP10|11216|A kinase (PRKA) anchor protein 10##NM_007202|AKAP10|11216|A kinase (PRKA) anchor protein 10##BC034988|ULK2|9706|unc-51-like kinase 2 (C. elegans)##AB014523|ULK2|9706|unc-51-like kinase 2 (C. elegans)##NM_001142610|ULK2|9706|unc-51-like kinase 2 (C. elegans)##NM_014683|ULK2|9706|unc-51-like kinase 2 (C. elegans)##BC039310|ULK2|9706|unc-51-like kinase 2 (C. elegans)##NM_001243439|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK295093|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK314341|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816328|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816329|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001033553|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_152904|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AB041533|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1	0.0	0.96363	CTCF.p2:-15:0.964
chr17	5185172	5185320	reg1004183.p1	7.379	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-47145	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-89866	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-90073	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	420	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	137679	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	137714	+	DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein	0.444992	0.0	
chr19	58976378	58976475	reg1003377.p1	7.379	+	TSC_hg19_v1_chr19_+_58962982 AK127750 NM_207395 BC140881 BC140882 BX648711 AK131452	-13431	+	AK057460 NM_003433	-24838	-	BC017651 TSC_hg19_v1_chr19_+_58920143 AK298929	-56296	+	TSC_hg19_v1_chr19_+_58978445 NM_014347 BC007717 AF060503	2002	+	AK092341 TSC_hg19_v1_chr19_+_58978664	2241	+	AY280800 TSC_hg19_v1_chr19_+_58987792 AK000633 AY279351 NM_017908 BC017206 AK026153	11357	+	AK127750|ZNF324B|388569|zinc finger protein 324B##NM_207395|ZNF324B|388569|zinc finger protein 324B##BC140881|ZNF324B|388569|zinc finger protein 324B##BC140882|ZNF324B|388569|zinc finger protein 324B##BX648711|ZNF324B|388569|zinc finger protein 324B##AK131452|ZNF324B|388569|zinc finger protein 324B##AK057460|ZNF132|7691|zinc finger protein 132##NM_003433|ZNF132|7691|zinc finger protein 132##BC017651|ZNF584|201514|zinc finger protein 584##AK298929|ZNF584|201514|zinc finger protein 584##NM_014347|ZNF324|25799|zinc finger protein 324##BC007717|ZNF324|25799|zinc finger protein 324##AF060503|ZNF324|25799|zinc finger protein 324##AK092341|ZNF324|25799|zinc finger protein 324##AY280800|ZNF446|55663|zinc finger protein 446##AK000633|ZNF446|55663|zinc finger protein 446##AY279351|ZNF446|55663|zinc finger protein 446##NM_017908|ZNF446|55663|zinc finger protein 446##BC017206|ZNF446|55663|zinc finger protein 446##AK026153|ZNF446|55663|zinc finger protein 446	0.998831	0.0	
chr14	61645043	61645179	reg1004418.p1	7.378	+	TSC_hg19_v1_chr14_+_61447962 BX648332 BC110378 BC064429 BX248072 AF070578 AK303839	-197056	+	TSC_hg19_v1_chr14_+_61447932 BC050349	-197175	+	NM_001172702 NM_153811 AF543422 TSC_hg19_v1_chr14_+_61447920	-197234	+	AB464738 TSC_hg19_v1_chr14_-_61747887	102766	-	BC101726 BC113559 TSC_hg19_v1_chr14_-_61747937	102814	-	TSC_hg19_v1_chr14_-_61747957 AK091169 AX746825	102854	-	BX648332|SLC38A6|145389|solute carrier family 38, member 6##BC110378|SLC38A6|145389|solute carrier family 38, member 6##BC064429|SLC38A6|145389|solute carrier family 38, member 6##BX248072|SLC38A6|145389|solute carrier family 38, member 6##AF070578|SLC38A6|145389|solute carrier family 38, member 6##AK303839|SLC38A6|145389|solute carrier family 38, member 6##BC050349|SLC38A6|145389|solute carrier family 38, member 6##NM_001172702|SLC38A6|145389|solute carrier family 38, member 6##NM_153811|SLC38A6|145389|solute carrier family 38, member 6##AF543422|SLC38A6|145389|solute carrier family 38, member 6##BC101726|TMEM30B|161291|transmembrane protein 30B##BC113559|TMEM30B|161291|transmembrane protein 30B##AK091169|TMEM30B|161291|transmembrane protein 30B	1.086819	0.0	denovo_WM_7:27:0.857
chr8	11141824	11141936	reg1003133.p1	7.378	+	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	-83015	-	TSC_hg19_v1_chr8_-_10697386 AF205718 AF418553 AJ344104	-444471	-	AY238941 AY523566 BC093762 BC143382 NM_017884 TSC_hg19_v1_chr8_-_10697379 AY029161 AK313715 BC015479 AK296724	-444546	-	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	132	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	475	+	AJ291677 NM_054028 BC131696	46630	+	AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AF205718|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AF418553|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ344104|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY238941|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY523566|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC093762|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC143382|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##NM_017884|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AK313715|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC015479|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5	0.0	0.0	
chr3	196254118	196254236	reg1004009.p1	7.377	+	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	-11964	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	-23599	-	TSC_hg19_v1_chr3_-_196159304 NM_015562	-94844	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	41213	-	AK025697 TSC_hg19_v1_chr3_+_196295533	41330	+	TSC_hg19_v1_chr3_+_196295733 NM_001105573	41555	+	AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##NM_015562|UBXN7|26043|UBX domain protein 7##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53##AK025697|FBXO45|200933|F-box protein 45##NM_001105573|FBXO45|200933|F-box protein 45	1.992477	0.0	denovo_WM_7:42:0.433	denovo_WM_7:43:0.289	denovo_WM_7:58:0.320	denovo_WM_7:59:0.465
chr5	106812787	106812942	reg1004399.p2	7.377	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3914383	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4218407	+	BC024591 NM_015216 AB463068	-4347590	+	AK308672 NM_001962 U26403	193726	-	TSC_hg19_v1_chr5_-_107717106 AK126722	904266	-	BC063316 NM_001163315	904934	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.200983	0.0	
chr19	7783703	7783875	reg1004956.p1	7.376	+	BC064417 BC062591 AK223207 BC014108 M14766 TSC_hg19_v1_chr19_-_7767004 AK310707 AK310071 M15059 NM_001220500 NM_002002 X04772	-16785	-	TSC_hg19_v1_chr19_-_7764328 NM_001207019	-19463	-	TSC_hg19_v1_chr19_+_7745742 BC042161 NM_174894 NM_001042461 BC022836	-38034	+	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	13227	-	AY042221 AY042222 AY042223 AY042224 AY042225 AY042226 AY042227 AY042228 AY042229 AY042230 AY042231 AY042232 AY042233 AB527563 BC110615 AF290886 AK293089 TSC_hg19_v1_chr19_-_7812421 M98457 AK304190 AK313585 NM_001144893 NM_001144894 NM_001144895 NM_001144896 NM_001144897 NM_001144899 NM_021155	28640	-	NM_001144904 NM_001144905 NM_001144906 NM_001144907 NM_001144908 NM_001144909 NM_001144910 NM_001144911 NM_014257 AK292278 BC038851 AF290887 AK304499 AK314704 AB015629 AF245219 AK298084 AK023750 BC110614 AY343913 DQ893779 AY042234 AY042235 AY042236 AY042237 AY042238 AY042239 AY042240	44304	+	BC064417|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC062591|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK223207|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC014108|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M14766|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310707|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310071|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M15059|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_001220500|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_002002|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##X04772|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_001207019|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC042161|TRAPPC5|126003|trafficking protein particle complex 5##NM_174894|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042461|TRAPPC5|126003|trafficking protein particle complex 5##BC022836|TRAPPC5|126003|trafficking protein particle complex 5##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G##AY042221|CD209|30835|CD209 molecule##AY042222|CD209|30835|CD209 molecule##AY042223|CD209|30835|CD209 molecule##AY042224|CD209|30835|CD209 molecule##AY042225|CD209|30835|CD209 molecule##AY042226|CD209|30835|CD209 molecule##AY042227|CD209|30835|CD209 molecule##AY042228|CD209|30835|CD209 molecule##AY042229|CD209|30835|CD209 molecule##AY042230|CD209|30835|CD209 molecule##AY042231|CD209|30835|CD209 molecule##AY042232|CD209|30835|CD209 molecule##AY042233|CD209|30835|CD209 molecule##BC110615|CD209|30835|CD209 molecule##AF290886|CD209|30835|CD209 molecule##AK293089|CD209|30835|CD209 molecule##M98457|CD209|30835|CD209 molecule##AK304190|CD209|30835|CD209 molecule##AK313585|CD209|30835|CD209 molecule##NM_001144893|CD209|30835|CD209 molecule##NM_001144894|CD209|30835|CD209 molecule##NM_001144895|CD209|30835|CD209 molecule##NM_001144896|CD209|30835|CD209 molecule##NM_001144897|CD209|30835|CD209 molecule##NM_001144899|CD209|30835|CD209 molecule##NM_021155|CD209|30835|CD209 molecule##NM_001144904|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144905|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144906|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144907|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144908|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144909|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144910|CLEC4M|10332|C-type lectin domain family 4, member M##NM_001144911|CLEC4M|10332|C-type lectin domain family 4, member M##NM_014257|CLEC4M|10332|C-type lectin domain family 4, member M##AK292278|CLEC4M|10332|C-type lectin domain family 4, member M##BC038851|CLEC4M|10332|C-type lectin domain family 4, member M##AF290887|CLEC4M|10332|C-type lectin domain family 4, member M##AK304499|CLEC4M|10332|C-type lectin domain family 4, member M##AK314704|CLEC4M|10332|C-type lectin domain family 4, member M##AB015629|CLEC4M|10332|C-type lectin domain family 4, member M##AF245219|CLEC4M|10332|C-type lectin domain family 4, member M##AK298084|CLEC4M|10332|C-type lectin domain family 4, member M##AK023750|CLEC4M|10332|C-type lectin domain family 4, member M##BC110614|CLEC4M|10332|C-type lectin domain family 4, member M##AY343913|CLEC4M|10332|C-type lectin domain family 4, member M##DQ893779|CLEC4M|10332|C-type lectin domain family 4, member M##AY042234|CLEC4M|10332|C-type lectin domain family 4, member M##AY042235|CLEC4M|10332|C-type lectin domain family 4, member M##AY042236|CLEC4M|10332|C-type lectin domain family 4, member M##AY042237|CLEC4M|10332|C-type lectin domain family 4, member M##AY042238|CLEC4M|10332|C-type lectin domain family 4, member M##AY042239|CLEC4M|10332|C-type lectin domain family 4, member M##AY042240|CLEC4M|10332|C-type lectin domain family 4, member M	0.99203	0.0	denovo_WM_7:13:0.837
chr5	172199611	172199739	reg1004625.p1	7.374	+	TSC_hg19_v1_chr5_-_172198199 X68277 AK300487 AK298047 AK298658 AK304475 AK316321 BC022463 NM_004417 AK299391	-1464	-	AF275799 TSC_hg19_v1_chr5_-_172083715	-116032	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	-131422	+	TSC_hg19_v1_chr5_+_172261253 NM_001031711 AB033007 BC012766 BC014490 AB463606	61643	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	186773	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	211107	+	X68277|DUSP1|1843|dual specificity phosphatase 1##AK300487|DUSP1|1843|dual specificity phosphatase 1##AK298047|DUSP1|1843|dual specificity phosphatase 1##AK298658|DUSP1|1843|dual specificity phosphatase 1##AK304475|DUSP1|1843|dual specificity phosphatase 1##AK316321|DUSP1|1843|dual specificity phosphatase 1##BC022463|DUSP1|1843|dual specificity phosphatase 1##NM_004417|DUSP1|1843|dual specificity phosphatase 1##AK299391|DUSP1|1843|dual specificity phosphatase 1##GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001031711|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##AB033007|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC012766|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC014490|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1	0.0	0.0	
chr22	36877881	36878061	reg1000594.p3	7.373	+	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	-292	-	TSC_hg19_v1_chr22_-_36784062 NM_002473	-93913	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-93963	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	25087	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	25146	-	BC093686 BC101477 BC093100 TSC_hg19_v1_chr22_-_36925162	47180	-	BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC093686|EIF3D|8664|eukaryotic translation initiation factor 3, subunit D##BC101477|EIF3D|8664|eukaryotic translation initiation factor 3, subunit D##BC093100|EIF3D|8664|eukaryotic translation initiation factor 3, subunit D	0.33364	0.0	denovo_WM_7:-50:0.334
chr3	115859089	115859209	reg1005450.p1	7.373	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-516730	+	NM_001130064 NM_002045	-516999	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-993035	-	AK315286 TSC_hg19_v1_chr3_-_116164338	305182	-	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	305224	-	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2894384	-	AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315286|LSAMP|4045|limbic system-associated membrane protein##BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11	0.067761	0.150696	
chr3	149134969	149135149	reg1005315.p1	7.373	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-39517	-	TSC_hg19_v1_chr3_-_149095468 AK130073	-39587	-	TSC_hg19_v1_chr3_-_149095436 BC008442	-39627	-	NM_004617 TSC_hg19_v1_chr3_+_149192430	57343	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	57430	+	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	240676	-	BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AK130073|TM4SF1|4071|transmembrane 4 L six family member 1##BC008442|TM4SF1|4071|transmembrane 4 L six family member 1##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1	1.369807	0.0	denovo_WM_7:-50:0.740	denovo_WM_7:-53:0.236
chr5	81045430	81045571	reg1004879.p2	7.373	+	BC075011 BC075010 AK122960 AB078619 BC089437 NM_130767 TSC_hg19_v1_chr5_-_80690052	-355498	-	NM_001131035 NM_001131036 NM_032280 AL512712 TSC_hg19_v1_chr5_+_80597439 BC032736 AK314160 BC022799 BC014841	-448061	+	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	-448128	-	TSC_hg19_v1_chr5_-_81046929 AB528651 CU677799 DQ891620 DQ894812 EU176592 EU831646 EU831730 AK293544 AK074537 AK294864 AK297494 AF161465 AF077048 AK299858 AK312337 CR936787 AL080076 BC017020	1399	-	TSC_hg19_v1_chr5_-_81046990 NM_012446	1608	-	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	222345	+	BC075011|ACOT12|134526|acyl-CoA thioesterase 12##BC075010|ACOT12|134526|acyl-CoA thioesterase 12##AK122960|ACOT12|134526|acyl-CoA thioesterase 12##AB078619|ACOT12|134526|acyl-CoA thioesterase 12##BC089437|ACOT12|134526|acyl-CoA thioesterase 12##NM_130767|ACOT12|134526|acyl-CoA thioesterase 12##NM_001131035|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_001131036|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_032280|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AL512712|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC032736|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK314160|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC022799|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC014841|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067##DQ891620|SSBP2|23635|single-stranded DNA binding protein 2##DQ894812|SSBP2|23635|single-stranded DNA binding protein 2##EU176592|SSBP2|23635|single-stranded DNA binding protein 2##EU831646|SSBP2|23635|single-stranded DNA binding protein 2##EU831730|SSBP2|23635|single-stranded DNA binding protein 2##AK293544|SSBP2|23635|single-stranded DNA binding protein 2##AK074537|SSBP2|23635|single-stranded DNA binding protein 2##AK294864|SSBP2|23635|single-stranded DNA binding protein 2##AK297494|SSBP2|23635|single-stranded DNA binding protein 2##AF161465|SSBP2|23635|single-stranded DNA binding protein 2##AF077048|SSBP2|23635|single-stranded DNA binding protein 2##AK299858|SSBP2|23635|single-stranded DNA binding protein 2##AK312337|SSBP2|23635|single-stranded DNA binding protein 2##CR936787|SSBP2|23635|single-stranded DNA binding protein 2##AL080076|SSBP2|23635|single-stranded DNA binding protein 2##BC017020|SSBP2|23635|single-stranded DNA binding protein 2##NM_012446|SSBP2|23635|single-stranded DNA binding protein 2##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)	0.0	0.0	
chr19	12111410	12111560	reg1004988.p1	7.372	+	AK092240 AK299224 AX747424 NM_001012753 BC105711 BC105712 BC105713	-35603	+	TSC_hg19_v1_chr19_+_12035889 AK299182 AK308305 AL136732 NM_144566 BC144406 BC136777	-75567	+	TSC_hg19_v1_chr19_+_11998643 BC051309 NM_021915 EU446913	-112812	+	TSC_hg19_v1_chr19_-_12146492 AK129553 BC047412	35004	-	TSC_hg19_v1_chr19_-_12146530 AK098300 NM_001080411	35056	-	NM_001080404	52296	-	AK092240|ZNF763|284390|zinc finger protein 763##AK299224|ZNF763|284390|zinc finger protein 763##NM_001012753|ZNF763|284390|zinc finger protein 763##BC105711|ZNF763|284390|zinc finger protein 763##BC105712|ZNF763|284390|zinc finger protein 763##BC105713|ZNF763|284390|zinc finger protein 763##AK299182|ZNF763|284390|zinc finger protein 763##AK308305|ZNF700|90592|zinc finger protein 700##AL136732|ZNF700|90592|zinc finger protein 700##NM_144566|ZNF700|90592|zinc finger protein 700##BC144406|ZNF700|90592|zinc finger protein 700##BC136777|ZNF700|90592|zinc finger protein 700##BC051309|ZNF69|7620|zinc finger protein 69##NM_021915|ZNF69|7620|zinc finger protein 69##EU446913|ZNF69|7620|zinc finger protein 69##BC047412|ZNF433|163059|zinc finger protein 433##AK098300|ZNF433|163059|zinc finger protein 433##NM_001080411|ZNF433|163059|zinc finger protein 433##NM_001080404|ZNF878|729747|zinc finger protein 878	0.984664	0.0	denovo_WM_7:13:0.616	denovo_WM_7:16:0.312
chr3	14984716	14984829	reg1004550.p1	7.371	+	NM_152536	-124304	+	NM_001184957 NM_001184958 NM_032137 AK131481 BC030599 AL834386 AL136781 BC038406	-268127	+	AK309525 TSC_hg19_v1_chr3_+_14693279 AF151046	-291489	+	TSC_hg19_v1_chr3_-_14988966 BC014104 BC063441 BC039246	4184	-	TSC_hg19_v1_chr3_-_14989000 AK055924	4265	-	TSC_hg19_v1_chr3_+_14989089 AK290590 L27586 NM_003298	4383	+	NM_152536|FGD5|152273|FYVE, RhoGEF and PH domain containing 5##NM_001184957|C3orf20|84077|chromosome 3 open reading frame 20##NM_001184958|C3orf20|84077|chromosome 3 open reading frame 20##NM_032137|C3orf20|84077|chromosome 3 open reading frame 20##AK131481|C3orf20|84077|chromosome 3 open reading frame 20##BC030599|C3orf20|84077|chromosome 3 open reading frame 20##AL834386|C3orf20|84077|chromosome 3 open reading frame 20##AL136781|C3orf20|84077|chromosome 3 open reading frame 20##BC038406|C3orf20|84077|chromosome 3 open reading frame 20##AK309525|C3orf19|51244|chromosome 3 open reading frame 19##AF151046|C3orf19|51244|chromosome 3 open reading frame 19##BC014104|LOC100505641|100505641|uncharacterized LOC100505641##BC063441|LOC100505641|100505641|uncharacterized LOC100505641##BC039246|LOC100505641|100505641|uncharacterized LOC100505641##AK055924|LOC100505641|100505641|uncharacterized LOC100505641##AK290590|NR2C2|7182|nuclear receptor subfamily 2, group C, member 2##L27586|NR2C2|7182|nuclear receptor subfamily 2, group C, member 2##NM_003298|NR2C2|7182|nuclear receptor subfamily 2, group C, member 2	0.901943	0.0	denovo_WM_7:9:0.420	denovo_WM_7:10:0.468
chr7	134583870	134584004	reg1004873.p2	7.371	+	BC014035 TSC_hg19_v1_chr7_+_134576197 BC061926 BC005006 D90452 D90453	-7664	+	NM_033139 NM_033140 TSC_hg19_v1_chr7_+_134576161	-7782	+	TSC_hg19_v1_chr7_+_134464419 BC040354	-119515	+	TSC_hg19_v1_chr7_+_134671258 AK302827 NM_178563 BC030651 AL832281 AK023045 AK311252	87348	+	NM_018295 TSC_hg19_v1_chr7_+_134832838 AK001862 AK225055 AK301268 BC020942	248910	+	NM_001243753 NM_001243755	270288	-	BC014035|CALD1|800|caldesmon 1##BC061926|CALD1|800|caldesmon 1##BC005006|CALD1|800|caldesmon 1##D90452|CALD1|800|caldesmon 1##D90453|CALD1|800|caldesmon 1##NM_033139|CALD1|800|caldesmon 1##NM_033140|CALD1|800|caldesmon 1##BC040354|CALD1|800|caldesmon 1##AK302827|AGBL3|340351|ATP/GTP binding protein-like 3##NM_178563|AGBL3|340351|ATP/GTP binding protein-like 3##BC030651|AGBL3|340351|ATP/GTP binding protein-like 3##AL832281|AGBL3|340351|ATP/GTP binding protein-like 3##AK023045|AGBL3|340351|ATP/GTP binding protein-like 3##NM_018295|TMEM140|55281|transmembrane protein 140##AK001862|TMEM140|55281|transmembrane protein 140##AK225055|TMEM140|55281|transmembrane protein 140##AK301268|TMEM140|55281|transmembrane protein 140##BC020942|TMEM140|55281|transmembrane protein 140##NM_001243753|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243755|C7orf49|78996|chromosome 7 open reading frame 49	0.995633	0.0	denovo_WM_7:29:0.437	denovo_WM_7:30:0.438
chr7	95319785	95319903	reg1000476.p1	7.371	+	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	-93981	-	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	-204551	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-255483	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	82064	+	CU675453 DQ892851 DQ896098 Y17571 AK294629 TSC_hg19_v1_chr7_-_95951381 BC006566 AJ496569 AK000766 AK222864 AF118838 NM_001160210 NM_014251	631558	-	BC140736 BC171740 AK124274 NM_001201450 NM_001201451	812983	-	BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##DQ892851|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##DQ896098|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##Y17571|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK294629|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC006566|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AJ496569|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK000766|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK222864|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AF118838|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_001160210|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_014251|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC140736|FLJ42280|401388|putative uncharacterized protein FLJ42280##BC171740|FLJ42280|401388|putative uncharacterized protein FLJ42280##AK124274|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201450|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201451|FLJ42280|401388|putative uncharacterized protein FLJ42280	0.992624	0.151373	denovo_WM_7:53:0.442	denovo_WM_7:54:0.227	denovo_WM_7:55:0.302
chr19	45273751	45273896	reg1002207.p1	7.370	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	-21842	+	BC144608 NM_001039213	-71403	+	BC083499 NM_001127893 NM_020219	-99100	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	7333	+	TSC_hg19_v1_chr19_+_45312359 BC014065 NM_001013257 NM_005581 X83425 BC036745 X80026 BC050450 AB463427 CU690688 HE572749	38533	+	NM_001042724 NM_002856 TSC_hg19_v1_chr19_+_45349482	75619	+	NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##BC083499|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_001127893|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_020219|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001013257|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_005581|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X83425|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC036745|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X80026|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC050450|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_001042724|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_002856|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)	0.994077	0.0	denovo_WM_7:-22:0.779
chr2	99375929	99376060	reg1004644.p1	7.370	+	NM_012214 TSC_hg19_v1_chr2_-_99347596	-28381	-	TSC_hg19_v1_chr2_-_99347557 AK314024	-28498	-	AK304393 AK309852 NM_001160154	-96059	-	BC068277 NM_207362	176686	-	BC028366 NM_182911	382041	-	AK126402 AK314133 BC021264 NM_144706	382071	+	NM_012214|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK314024|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK304393|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK309852|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##NM_001160154|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##BC068277|C2orf55|343990|chromosome 2 open reading frame 55##NM_207362|C2orf55|343990|chromosome 2 open reading frame 55##BC028366|TSGA10|80705|testis specific, 10##NM_182911|TSGA10|80705|testis specific, 10##AK314133|C2orf15|150590|chromosome 2 open reading frame 15##BC021264|C2orf15|150590|chromosome 2 open reading frame 15##NM_144706|C2orf15|150590|chromosome 2 open reading frame 15	0.010315	0.0	
chr8	122842439	122842543	reg1004527.p1	7.370	+	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	-188865	-	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-1017985	-	BC098573 TSC_hg19_v1_chr8_-_121824269	-1018221	-	TSC_hg19_v1_chr8_+_123793897 NM_014943	951420	+	BC042145 TSC_hg19_v1_chr8_+_123794000	951503	+	TSC_hg19_v1_chr8_+_123794108 AB020661	951612	+	BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC098573|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##AB020661|ZHX2|22882|zinc fingers and homeoboxes 2	0.0	0.998376	CTCF.p2:-3:0.998
chr1	17765751	17765931	reg1002960.p1	7.369	+	TSC_hg19_v1_chr1_-_17765069 BC053908 NM_001136204	-780	-	TSC_hg19_v1_chr1_-_17765031 AB384219 BC042141	-831	-	BC142946 TSC_hg19_v1_chr1_-_17764885	-979	-	TSC_hg19_v1_chr1_-_17766174 AB040903	334	-	TSC_hg19_v1_chr1_-_17766260 NM_018715	430	-	TSC_hg19_v1_chr1_+_17846826 AK129959	80982	+	BC053908|RCC2|55920|regulator of chromosome condensation 2##NM_001136204|RCC2|55920|regulator of chromosome condensation 2##BC042141|RCC2|55920|regulator of chromosome condensation 2##BC142946|RCC2|55920|regulator of chromosome condensation 2##AB040903|RCC2|55920|regulator of chromosome condensation 2##NM_018715|RCC2|55920|regulator of chromosome condensation 2##AK129959|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like	0.999637	0.0	denovo_WM_7:-5:0.425	denovo_WM_7:-6:0.425
chr6	106092036	106092142	reg1003767.p1	7.369	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-241094	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-241131	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-241243	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	442107	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	442146	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	454715	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.702902	0.0	denovo_WM_7:10:0.549
chrX	2616119	2616247	reg1004288.p1	7.368	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	-6871	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-197195	-	BC015030 NM_001171135	-197604	-	AK304164 NM_001141919 NM_001141920 NM_175569 AF380356 AF534880 BC100764 BC100765 BC100766 BC100767 Z48517 Z48518 Z48519	54031	+	TSC_hg19_v1_chrX_+_2746813 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 U94362 AK098046 AK292496 U94363 BC023152	130719	+	AF160499 TSC_hg19_v1_chrX_-_2847338 AB590968 BC080179 BC020229	231148	-	M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##AK304164|XG|7499|Xg blood group##NM_001141919|XG|7499|Xg blood group##NM_001141920|XG|7499|Xg blood group##NM_175569|XG|7499|Xg blood group##AF380356|XG|7499|Xg blood group##BC100764|XG|7499|Xg blood group##BC100765|XG|7499|Xg blood group##BC100766|XG|7499|Xg blood group##BC100767|XG|7499|Xg blood group##Z48517|XG|7499|Xg blood group##Z48518|XGPY2|100132596|Xg pseudogene, Y-linked 2##Z48519|XGPY2|100132596|Xg pseudogene, Y-linked 2##NM_001079855|GYG2|8908|glycogenin 2##NM_001184702|GYG2|8908|glycogenin 2##NM_001184703|GYG2|8908|glycogenin 2##NM_001184704|GYG2|8908|glycogenin 2##NM_003918|GYG2|8908|glycogenin 2##U94362|GYG2|8908|glycogenin 2##AK098046|GYG2|8908|glycogenin 2##AK292496|GYG2|8908|glycogenin 2##U94363|GYG2|8908|glycogenin 2##BC023152|GYG2|8908|glycogenin 2##AF160499|ARSD|414|arylsulfatase D##BC080179|ARSD|414|arylsulfatase D##BC020229|ARSD|414|arylsulfatase D	1.891434	0.0	denovo_WM_7:31:0.488	denovo_WM_7:35:0.245	denovo_WM_7:51:0.290	denovo_WM_7:52:0.290	denovo_WM_7:53:0.306
chr17_ctg5_hap1	318335	318494	reg1006283.p1	7.367	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.978792	0.0	denovo_WM_7:-36:0.954
chr7	82237553	82237703	reg1004927.p1	7.367	+	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	-164548	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	-164782	-	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-838254	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	554241	-	TSC_hg19_v1_chr7_-_82792195 NM_014510 NM_033026 AK297315	554608	-	AK303925 NM_001178129	1033118	-	NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)##NM_014510|PCLO|27445|piccolo (presynaptic cytomatrix protein)##NM_033026|PCLO|27445|piccolo (presynaptic cytomatrix protein)##AK297315|PCLO|27445|piccolo (presynaptic cytomatrix protein)##AK303925|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_001178129|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	2.985935	0.0	denovo_WM_7:-51:0.516	denovo_WM_7:-59:0.301
chr10	112563551	112563731	reg1005044.p2	7.365	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-159512	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-219526	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-236149	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	67971	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	68073	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	115055	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	1.894153	0.0	denovo_WM_7:-47:0.590	denovo_WM_7:-62:0.605	denovo_WM_7:-66:0.278
chr12	29844583	29844763	reg1004027.p1	7.365	+	NM_183378	-194055	-	TSC_hg19_v1_chr12_-_29534109 AF183410 AF216751 AF302767 BC000887 BC107794 NM_016570	-310558	-	AK222799 TSC_hg19_v1_chr12_-_29534084 AL834128	-310590	-	TSC_hg19_v1_chr12_-_29936844 GQ865601 NM_001193451	92097	-	BC042083 NM_175861	93018	-	AK302260 NM_001190995	985487	-	NM_183378|OVCH1|341350|ovochymase 1##AF183410|ERGIC2|51290|ERGIC and golgi 2##AF216751|ERGIC2|51290|ERGIC and golgi 2##AF302767|ERGIC2|51290|ERGIC and golgi 2##BC000887|ERGIC2|51290|ERGIC and golgi 2##BC107794|ERGIC2|51290|ERGIC and golgi 2##NM_016570|ERGIC2|51290|ERGIC and golgi 2##AK222799|ERGIC2|51290|ERGIC and golgi 2##AL834128|ERGIC2|51290|ERGIC and golgi 2##GQ865601|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##NM_001193451|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##BC042083|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##NM_175861|TMTC1|83857|transmembrane and tetratricopeptide repeat containing 1##AK302260|IPO8|10526|importin 8##NM_001190995|IPO8|10526|importin 8	0.996296	0.0	denovo_WM_7:-8:0.245	denovo_WM_7:-9:0.245	denovo_WM_7:-10:0.245	denovo_WM_7:-11:0.245
chr19	38400565	38400703	reg1004082.p1	7.365	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-2722	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-2777	+	AK302913 AY026504 AK128826 NM_031951	-3360	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	314201	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	319682	-	TSC_hg19_v1_chr19_-_38720336 AK297581	319700	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.999808	0.0	denovo_WM_7:-9:0.230	denovo_WM_7:-10:0.230	denovo_WM_7:-11:0.230	denovo_WM_7:-12:0.230
chr3	142227762	142227894	reg1004887.p1	7.365	+	TSC_hg19_v1_chr3_-_142166862 AK096177	-60926	-	TSC_hg19_v1_chr3_-_142166860 AY137776 AB527239 BC048104 BC078146 CR749518 BC039314 BX640905 NM_001042604 NM_019001 AK304312 CR627396	-61007	-	TSC_hg19_v1_chr3_-_141944444 NM_001039547	-283374	-	TSC_hg19_v1_chr3_-_142297595 U76308 Y09077 AK307402	69771	-	U49844 TSC_hg19_v1_chr3_-_142297678 NM_001184	69837	-	TSC_hg19_v1_chr3_+_142315259 NM_001145319 AK290316	87431	+	AK096177|XRN1|54464|5'-3' exoribonuclease 1##AY137776|XRN1|54464|5'-3' exoribonuclease 1##BC048104|XRN1|54464|5'-3' exoribonuclease 1##BC078146|XRN1|54464|5'-3' exoribonuclease 1##CR749518|XRN1|54464|5'-3' exoribonuclease 1##BC039314|XRN1|54464|5'-3' exoribonuclease 1##BX640905|XRN1|54464|5'-3' exoribonuclease 1##NM_001042604|XRN1|54464|5'-3' exoribonuclease 1##NM_019001|XRN1|54464|5'-3' exoribonuclease 1##AK304312|XRN1|54464|5'-3' exoribonuclease 1##CR627396|XRN1|54464|5'-3' exoribonuclease 1##NM_001039547|GK5|256356|glycerol kinase 5 (putative)##U76308|ATR|545|ataxia telangiectasia and Rad3 related##Y09077|ATR|545|ataxia telangiectasia and Rad3 related##AK307402|ATR|545|ataxia telangiectasia and Rad3 related##U49844|ATR|545|ataxia telangiectasia and Rad3 related##NM_001184|ATR|545|ataxia telangiectasia and Rad3 related##NM_001145319|PLS1|5357|plastin 1##AK290316|PLS1|5357|plastin 1	1.006972	0.0	denovo_WM_7:-52:0.309	denovo_WM_7:-53:0.309	denovo_WM_7:-54:0.309
chr11	47198984	47199110	reg1004769.p1	7.364	+	NM_001242832 NM_032389	-372	-	TSC_hg19_v1_chr11_-_47198431 AK315992 AK098324	-614	-	AK301785 AL834337 EU832352 EU832437 AK300347 BC036823 AK027482 TSC_hg19_v1_chr11_-_47198413 AK304541 BC030148	-648	-	AK300968 AK000577 NM_001184975	8381	-	BC007914 AF149825 TSC_hg19_v1_chr11_-_47207959 AF242530 AK300658 BC011889 NM_001184974 NM_016223	8935	-	NM_000107 U18300 TSC_hg19_v1_chr11_+_47236524 AK313262 BC050455 AK091640 AX747106 BC000093 AB527602 AB107037 AB107038 AB107039 AB107040 BT007139 CU674030 DQ890719	37542	+	NM_001242832|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_032389|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK315992|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK098324|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK301785|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AL834337|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832352|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832437|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK300347|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC036823|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK027482|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK304541|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC030148|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK300968|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK000577|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184975|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##BC007914|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF149825|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF242530|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300658|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##BC011889|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184974|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_016223|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_000107|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##U18300|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK313262|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC050455|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK091640|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC000093|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107037|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107038|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107039|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107040|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BT007139|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##DQ890719|DDB2|1643|damage-specific DNA binding protein 2, 48kDa	0.012425	1.372934	CTCF.p2:-24:0.676	CTCF.p2:90:0.697
chr10	3213318	3213498	reg1003102.p1	7.362	+	TSC_hg19_v1_chr10_+_3160984 M64784	-52423	+	BC021698 TSC_hg19_v1_chr10_+_3151628	-61796	+	AK092597 AX747622 NM_001242339	-102590	+	BC045577 TSC_hg19_v1_chr10_-_3214936	1517	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	1562	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	1597	-	M64784|PFKP|5214|phosphofructokinase, platelet##BC021698|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1	1.992101	0.0	denovo_WM_7:-38:0.217	denovo_WM_7:-60:0.213
chr20	48247045	48247187	reg1003056.p1	7.362	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-62427	-	BC110572 BC110573 NM_004975	-147937	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-351921	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	83114	-	AB004550 TSC_hg19_v1_chr20_-_48330359	83240	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	83350	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.757023	0.0	denovo_WM_7:-59:0.757
chr5	130593856	130593969	reg1003137.p2	7.362	+	TSC_hg19_v1_chr5_+_130506676 BC037930 BC047079	-87241	+	AK000803 NM_181705 TSC_hg19_v1_chr5_+_130506648	-87269	+	TSC_hg19_v1_chr5_-_130501019 NM_005340	-92869	-	NM_001038702 NM_020240 TSC_hg19_v1_chr5_+_130599737	5809	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	5844	+	AK312406 TSC_hg19_v1_chr5_+_130599768	5856	+	BC037930|LYRM7|90624|Lyrm7 homolog (mouse)##BC047079|LYRM7|90624|Lyrm7 homolog (mouse)##AK000803|LYRM7|90624|Lyrm7 homolog (mouse)##NM_181705|LYRM7|90624|Lyrm7 homolog (mouse)##NM_005340|HINT1|3094|histidine triad nucleotide binding protein 1##NM_001038702|CDC42SE2|56990|CDC42 small effector 2##NM_020240|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2	0.789594	0.0	denovo_WM_7:8:0.297	denovo_WM_7:9:0.414
chr1	199120824	199120981	reg1004290.p1	7.361	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-214355	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-512572	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-512677	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	875967	+	AK316513 TSC_hg19_v1_chr1_+_200011716	890822	+	NM_001105517	1061753	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.996111	0.0	denovo_WM_7:-8:0.564	denovo_WM_7:-10:0.293
chr5	169232742	169232922	reg1000115.p3	7.361	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-168532	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-168588	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-222111	+	AK055998 NM_001129891	174911	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	300139	+	BC030767 NM_001102609 BC092511	427164	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.0	0.0	
chr2	62020549	62020659	reg1004320.p1	7.360	+	TSC_hg19_v1_chr2_-_61765394 BX647758 NM_003400	-255199	-	TSC_hg19_v1_chr2_-_61765383 BC032847 CR749840	-255225	-	TSC_hg19_v1_chr2_-_61765358 AL833550	-255249	-	BC107162 BC107163 AK310908 AB527366 AM392542 AM392832 AM393518 TSC_hg19_v1_chr2_-_62081180 BX648834 BX649029 AK023367 BC036448 NM_001201543 NM_032180	60559	-	U38846 EU446763 AB385091 TSC_hg19_v1_chr2_-_62115685 AK294665	95060	-	AK129860 TSC_hg19_v1_chr2_-_62115719 AK295330	95114	-	BX647758|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##NM_003400|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC032847|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##CR749840|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AL833550|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC107162|FAM161A|84140|family with sequence similarity 161, member A##BC107163|FAM161A|84140|family with sequence similarity 161, member A##AK310908|FAM161A|84140|family with sequence similarity 161, member A##AM392542|FAM161A|84140|family with sequence similarity 161, member A##AM392832|FAM161A|84140|family with sequence similarity 161, member A##AM393518|FAM161A|84140|family with sequence similarity 161, member A##BX648834|FAM161A|84140|family with sequence similarity 161, member A##BX649029|FAM161A|84140|family with sequence similarity 161, member A##AK023367|FAM161A|84140|family with sequence similarity 161, member A##BC036448|FAM161A|84140|family with sequence similarity 161, member A##NM_001201543|FAM161A|84140|family with sequence similarity 161, member A##NM_032180|FAM161A|84140|family with sequence similarity 161, member A##U38846|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##EU446763|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK294665|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK129860|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK295330|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)	0.994745	0.976569	CTCF.p2:8:0.977	denovo_WM_7:-53:0.328	denovo_WM_7:-54:0.278	denovo_WM_7:-55:0.277
chr7	90339002	90339156	reg1005188.p2	7.360	+	AB020641 BC152436 BC167152 BC167156 NM_012395 BC136477 AK289782 AB384534 BC152388	-296	+	TSC_hg19_v1_chr7_+_90225634 AK297974 AF119833	-113270	+	TSC_hg19_v1_chr7_+_90032774 AL136770 BC016061	-306275	+	AK295086 AK296406 AK307484 AK316026 TSC_hg19_v1_chr7_+_90339175	81	+	BC017719 TSC_hg19_v1_chr7_+_90893724	554622	+	TSC_hg19_v1_chr7_+_90893747 AB017363 NM_003505 AF072872 BC051271 AK314996	554797	+	AB020641|CDK14|5218|cyclin-dependent kinase 14##BC152436|CDK14|5218|cyclin-dependent kinase 14##BC167152|CDK14|5218|cyclin-dependent kinase 14##BC167156|CDK14|5218|cyclin-dependent kinase 14##NM_012395|CDK14|5218|cyclin-dependent kinase 14##BC136477|CDK14|5218|cyclin-dependent kinase 14##AK289782|CDK14|5218|cyclin-dependent kinase 14##BC152388|CDK14|5218|cyclin-dependent kinase 14##AK297974|CDK14|5218|cyclin-dependent kinase 14##AF119833|CDK14|5218|cyclin-dependent kinase 14##AL136770|CLDN12|9069|claudin 12##AK295086|CDK14|5218|cyclin-dependent kinase 14##AK296406|CDK14|5218|cyclin-dependent kinase 14##AK307484|CDK14|5218|cyclin-dependent kinase 14##AK316026|CDK14|5218|cyclin-dependent kinase 14##BC017719|FZD1|8321|frizzled family receptor 1##AB017363|FZD1|8321|frizzled family receptor 1##NM_003505|FZD1|8321|frizzled family receptor 1##AF072872|FZD1|8321|frizzled family receptor 1##BC051271|FZD1|8321|frizzled family receptor 1##AK314996|FZD1|8321|frizzled family receptor 1	0.969155	0.0	denovo_WM_7:14:0.840
chr7	74076832	74076941	reg1005266.p2	7.359	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-4764	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-4842	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-4865	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	111466	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	190953	-	TSC_hg19_v1_chr7_-_74306679 BC002581	229789	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	1.991758	0.0	denovo_WM_7:-20:0.470	denovo_WM_7:-21:0.323	denovo_WM_7:-36:0.295	denovo_WM_7:-37:0.442
chr20	46123421	46123571	reg1005448.p2	7.358	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-138008	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-146849	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-195927	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	7126	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	7188	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	291256	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.9974	0.0	
chr14	77491391	77491529	reg1002845.p3	7.357	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-198665	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-212198	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-212250	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	3224	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	3600	-	AK124327 TSC_hg19_v1_chr14_-_77542533	51073	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.0	0.0	
chr5	39238598	39238698	reg1004495.p2	7.355	+	BC117449 BC143645 BC015933 BX647195 BX647196 TSC_hg19_v1_chr5_-_39219666 AK130159 AK290403 NM_001465 NM_199335	-19019	-	AF198052 U93049 AF001862 TSC_hg19_v1_chr5_-_39203164	-35531	-	TSC_hg19_v1_chr5_-_39074499 AY515854 BC029608 BC137163 BC137164 BC144509 NM_152756	-164151	-	TSC_hg19_v1_chr5_-_39270745 AK297077 NM_001243093	32091	-	K02766 AB590412 DQ891410 CU676664 X02176 AK308045 BC020721 NM_001737	125960	-	DQ891872 EU176643 AB590149 CU678354 AF188298 TSC_hg19_v1_chr5_-_39394510 U39050	155823	-	BC117449|FYB|2533|FYN binding protein##BC143645|FYB|2533|FYN binding protein##BC015933|FYB|2533|FYN binding protein##BX647195|FYB|2533|FYN binding protein##BX647196|FYB|2533|FYN binding protein##AK130159|FYB|2533|FYN binding protein##AK290403|FYB|2533|FYN binding protein##NM_001465|FYB|2533|FYN binding protein##NM_199335|FYB|2533|FYN binding protein##AF198052|FYB|2533|FYN binding protein##U93049|FYB|2533|FYN binding protein##AF001862|FYB|2533|FYN binding protein##AY515854|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC029608|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137163|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137164|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC144509|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##NM_152756|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##AK297077|FYB|2533|FYN binding protein##NM_001243093|FYB|2533|FYN binding protein##K02766|C9|735|complement component 9##DQ891410|C9|735|complement component 9##X02176|C9|735|complement component 9##AK308045|C9|735|complement component 9##BC020721|C9|735|complement component 9##NM_001737|C9|735|complement component 9##DQ891872|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##EU176643|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##AF188298|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##U39050|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)	0.0	0.0	
chr12	11716029	11716188	reg1005180.p1	7.354	+	BC044827 NM_006248	-167617	-	BC044827 K03205 K03206 BC141917 K03204 NM_005039 NM_199353 NM_199354 AX772842	-207592	-	BC130386 BC035362 K03207 NM_002723 BC128191	-252748	-	TSC_hg19_v1_chr12_+_11802659 AK289441	86565	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	86666	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	86878	+	BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_006248|PRB2|653247|proline-rich protein BstNI subfamily 2##BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##K03205|PRB1|5542|proline-rich protein BstNI subfamily 1##K03206|PRB1|5542|proline-rich protein BstNI subfamily 1##BC141917|PRB1|5542|proline-rich protein BstNI subfamily 1##K03204|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_005039|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199353|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199354|PRB1|5542|proline-rich protein BstNI subfamily 1##BC130386|PRB4|5545|proline-rich protein BstNI subfamily 4##BC035362|PRB4|5545|proline-rich protein BstNI subfamily 4##K03207|PRB4|5545|proline-rich protein BstNI subfamily 4##NM_002723|PRB4|5545|proline-rich protein BstNI subfamily 4##BC128191|PRB4|5545|proline-rich protein BstNI subfamily 4##AK289441|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6	0.996981	0.0	denovo_WM_7:-11:0.214	denovo_WM_7:-14:0.429
chr10	112678910	112679039	reg1005207.p2	7.353	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	-278	-	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	-47260	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	-47362	+	TSC_hg19_v1_chr10_-_112678952 BC062778 AK021501 BC104248 BC104249 BC113000 BC113001 AK025724 BC105804 AK307314 BC073157 NM_001195304 NM_001195305 NM_001195307 NM_001243783	38	-	TSC_hg19_v1_chr10_+_112679309 NM_007373	321	+	TSC_hg19_v1_chr10_+_112679361 AK292833 AK293271	386	+	AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC062778|BBIP1|92482|BBSome interacting protein 1##AK021501|BBIP1|92482|BBSome interacting protein 1##BC104248|BBIP1|92482|BBSome interacting protein 1##BC104249|BBIP1|92482|BBSome interacting protein 1##BC113000|BBIP1|92482|BBSome interacting protein 1##BC113001|BBIP1|92482|BBSome interacting protein 1##AK025724|BBIP1|92482|BBSome interacting protein 1##BC105804|BBIP1|92482|BBSome interacting protein 1##AK307314|BBIP1|92482|BBSome interacting protein 1##BC073157|BBIP1|92482|BBSome interacting protein 1##NM_001195304|BBIP1|92482|BBSome interacting protein 1##NM_001195305|BBIP1|92482|BBSome interacting protein 1##NM_001195307|BBIP1|92482|BBSome interacting protein 1##NM_001243783|BBIP1|92482|BBSome interacting protein 1##NM_007373|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##AK292833|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)##AK293271|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)	0.0	0.0	
chr14	73240968	73241113	reg1003514.p1	7.353	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-841174	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-841887	+	AK294895 NM_001204423	-842224	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	119768	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	152095	+	AK098542 AF311602 NM_178441	212617	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	1.163819	0.0	
chr2	240964767	240964947	reg1002589.p1	7.352	+	TSC_hg19_v1_chr2_-_240964807 NM_004544	-45	-	AF453834 TSC_hg19_v1_chr2_-_240964750 CU678462 DQ891011 DQ894191 BC031332 AF087661 AB209440 AK290778 BC003417 AF087854	-96	-	TSC_hg19_v1_chr2_-_240323341 AK308791	-641509	-	NM_001005853 BC137561 BC137562	5018	-	NM_001080835	17541	-	NM_173351	20631	-	NM_004544|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF453834|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ891011|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ894191|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC031332|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087661|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AB209440|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK290778|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC003417|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087854|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK308791|HDAC4|9759|histone deacetylase 4##NM_001005853|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##BC137561|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##BC137562|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##NM_001080835|PRR21|643905|proline rich 21##NM_173351|OR6B3|150681|olfactory receptor, family 6, subfamily B, member 3	0.0	0.0	
chr1	16693372	16693521	reg1003790.p1	7.350	+	TSC_hg19_v1_chr1_-_16678969 BC063864 NM_018994 AK055598 BC043410	-14498	-	TSC_hg19_v1_chr1_-_16678922 AK310671	-14528	-	NM_030907	-129788	-	NM_001114600 NM_015609 BC023988 TSC_hg19_v1_chr1_+_16693726 BX640985 AJ295987 AB097042 AB097043 AB097046 AK297926 AK298576 AK308787 AL050028 AK316205 BC065538 AB097044 AB097045 BC010631	225	+	AK128106 BC022039 AK311614 AY327405 NM_198546	70456	-	NM_001145277 NM_001145278 NM_018090 TSC_hg19_v1_chr1_+_16767200	73738	+	BC063864|FBXO42|54455|F-box protein 42##NM_018994|FBXO42|54455|F-box protein 42##AK055598|FBXO42|54455|F-box protein 42##BC043410|FBXO42|54455|F-box protein 42##AK310671|FBXO42|54455|F-box protein 42##NM_030907|RSG1|79363|REM2 and RAB-like small GTPase 1##NM_001114600|C1orf144|26099|chromosome 1 open reading frame 144##NM_015609|C1orf144|26099|chromosome 1 open reading frame 144##BC023988|C1orf144|26099|chromosome 1 open reading frame 144##BX640985|C1orf144|26099|chromosome 1 open reading frame 144##AJ295987|C1orf144|26099|chromosome 1 open reading frame 144##AB097042|C1orf144|26099|chromosome 1 open reading frame 144##AB097043|C1orf144|26099|chromosome 1 open reading frame 144##AB097046|C1orf144|26099|chromosome 1 open reading frame 144##AK297926|C1orf144|26099|chromosome 1 open reading frame 144##AK298576|C1orf144|26099|chromosome 1 open reading frame 144##AK308787|C1orf144|26099|chromosome 1 open reading frame 144##AL050028|C1orf144|26099|chromosome 1 open reading frame 144##AK316205|C1orf144|26099|chromosome 1 open reading frame 144##BC065538|C1orf144|26099|chromosome 1 open reading frame 144##AB097044|C1orf144|26099|chromosome 1 open reading frame 144##AB097045|C1orf144|26099|chromosome 1 open reading frame 144##BC010631|C1orf144|26099|chromosome 1 open reading frame 144##AK128106|SPATA21|374955|spermatogenesis associated 21##BC022039|SPATA21|374955|spermatogenesis associated 21##AK311614|SPATA21|374955|spermatogenesis associated 21##AY327405|SPATA21|374955|spermatogenesis associated 21##NM_198546|SPATA21|374955|spermatogenesis associated 21##NM_001145277|NECAP2|55707|NECAP endocytosis associated 2##NM_001145278|NECAP2|55707|NECAP endocytosis associated 2##NM_018090|NECAP2|55707|NECAP endocytosis associated 2	0.017758	0.0	
chr12	96896142	96896322	reg1004423.p1	7.350	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-101915	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	-102249	-	TSC_hg19_v1_chr12_+_96588254 BC017371	-307965	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	404799	+	BC027605 NM_001135175	405011	+	TSC_hg19_v1_chr12_-_98897622 AK126817	2001395	-	AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK126817|LOC643770|643770|uncharacterized LOC643770	0.999281	0.0	
chr1	172844089	172844213	reg1004821.p1	7.349	+	D38122 AK314874 NM_000639 X89102 BC017502 U08137 AF288573 U11821 AB528416 DQ893466 DQ896147 CU675998 AY225406 AY858799	-215902	+	TSC_hg19_v1_chr1_+_172502291 NM_016227 AK302509 AL035291 BC137125 BC144487	-341770	+	TSC_hg19_v1_chr1_+_172502152 AK302949 AJ250075 NM_014283	-342009	+	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	175905	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	330502	-	CR542033 D90224 X79929 NM_003326	332241	-	D38122|FASLG|356|Fas ligand (TNF superfamily, member 6)##AK314874|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_000639|FASLG|356|Fas ligand (TNF superfamily, member 6)##X89102|FASLG|356|Fas ligand (TNF superfamily, member 6)##BC017502|FASLG|356|Fas ligand (TNF superfamily, member 6)##U08137|FASLG|356|Fas ligand (TNF superfamily, member 6)##AF288573|FASLG|356|Fas ligand (TNF superfamily, member 6)##U11821|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ893466|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ896147|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY225406|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY858799|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_016227|C1orf9|51430|chromosome 1 open reading frame 9##AK302509|C1orf9|51430|chromosome 1 open reading frame 9##AL035291|C1orf9|51430|chromosome 1 open reading frame 9##BC137125|C1orf9|51430|chromosome 1 open reading frame 9##BC144487|C1orf9|51430|chromosome 1 open reading frame 9##AK302949|C1orf9|51430|chromosome 1 open reading frame 9##AJ250075|C1orf9|51430|chromosome 1 open reading frame 9##NM_014283|C1orf9|51430|chromosome 1 open reading frame 9##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4	0.896993	0.0	denovo_WM_7:-3:0.819
chr2	227704010	227704180	reg1005350.p1	7.348	+	NM_001167608 NM_032276 TSC_hg19_v1_chr2_+_227700769 BC030293 AX775823 BC111056 AK074258 AX775825	-3365	+	TSC_hg19_v1_chr2_-_227664534 S62539	-39596	-	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	-40616	-	TSC_hg19_v1_chr2_-_228028922 X81053	324807	-	NM_000092	325179	-	NM_000091 X80031 TSC_hg19_v1_chr2_+_228029337	325215	+	NM_001167608|RHBDD1|84236|rhomboid domain containing 1##NM_032276|RHBDD1|84236|rhomboid domain containing 1##BC111056|RHBDD1|84236|rhomboid domain containing 1##AK074258|RHBDD1|84236|rhomboid domain containing 1##S62539|IRS1|3667|insulin receptor substrate 1##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1##X81053|COL4A4|1286|collagen, type IV, alpha 4##NM_000092|COL4A4|1286|collagen, type IV, alpha 4##NM_000091|COL4A3|1285|collagen, type IV, alpha 3 (Goodpasture antigen)##X80031|COL4A3|1285|collagen, type IV, alpha 3 (Goodpasture antigen)	0.0	0.0	
chrUn_gl000227	107513	107674	reg1004594.p1	7.348	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.398052	0.0	denovo_WM_7:23:0.369
chr10	27088343	27088493	reg1006334.p1	7.347	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-30601	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-101772	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-101834	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	61422	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	61521	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	61587	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	0.0	0.0	
chr10	46766997	46767101	reg1004841.p1	7.347	+	BC036539 AL050040 NM_001042363 NM_001042364 NM_001042365 NM_001042387 NM_001042395 NM_001042396 NM_001042397 NM_015605 CR933668 BX648913	-126028	-	AY704141 AY704142 AY704143 AY704144 AY704145 AY704147 AY704148 AY704150 AY704152 AY704153 AY704154 AY704156 AY704157 AY704158 NM_001042358 NM_001042359 NM_001042360 NM_001042361 NM_001042362 NM_001042390 NM_001042391 NM_001042392 NM_001042393 NM_001042394 AY753191	-126361	-	AB464105 AY704146 AY704149 AY704151 AY704155 BC093750 BC113473 BC143394 BC171725 NM_001042357 NM_001042389	-147053	-	BC139914 AK290186 TSC_hg19_v1_chr10_-_46970538	203461	-	TSC_hg19_v1_chr10_-_46970597 AK131036 AK293632 NM_031912 NM_181519	203551	-	BC011672 NM_014696	226496	+	BC036539|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AL050040|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042363|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042364|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042365|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042387|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042395|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042396|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042397|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_015605|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##CR933668|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BX648913|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704141|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704142|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704143|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704144|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704145|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704147|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704148|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704150|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704152|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704153|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704154|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704156|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704157|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704158|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042358|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042359|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042360|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042361|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042362|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042390|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042391|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042392|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042393|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042394|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##AY753191|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704146|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704149|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704151|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704155|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC093750|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC113473|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC143394|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC171725|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042357|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042389|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##BC139914|SYT15|83849|synaptotagmin XV##AK290186|SYT15|83849|synaptotagmin XV##AK131036|SYT15|83849|synaptotagmin XV##AK293632|SYT15|83849|synaptotagmin XV##NM_031912|SYT15|83849|synaptotagmin XV##NM_181519|SYT15|83849|synaptotagmin XV##BC011672|GPRIN2|9721|G protein regulated inducer of neurite outgrowth 2##NM_014696|GPRIN2|9721|G protein regulated inducer of neurite outgrowth 2	0.093826	0.0	
chr17	28659287	28659442	reg1006111.p1	7.347	+	NM_000386 TSC_hg19_v1_chr17_-_28619220	-40161	-	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	-40405	-	NM_001045	-96411	-	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	1698	-	TSC_hg19_v1_chr17_+_28705953 NM_001304 BC051702 BC045549 BC054116	46575	+	TSC_hg19_v1_chr17_+_28705963 D85390 BC045624	46602	+	NM_000386|BLMH|642|bleomycin hydrolase##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_001045|SLC6A4|6532|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4##AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_001304|CPD|1362|carboxypeptidase D##BC051702|CPD|1362|carboxypeptidase D##BC045549|CPD|1362|carboxypeptidase D##BC054116|CPD|1362|carboxypeptidase D##D85390|CPD|1362|carboxypeptidase D##BC045624|CPD|1362|carboxypeptidase D	0.0	0.0	
chr20	25322713	25322861	reg1004886.p1	7.347	+	TSC_hg19_v1_chr20_+_25228699 NM_002862 AK309036 AK299697 BC017045 J03544 BC030795 AB209080 U47025 DQ894674 EU176283	-94029	+	AK302395 AK297954 TSC_hg19_v1_chr20_+_25176475	-146307	+	TSC_hg19_v1_chr20_+_25176363 AK308626 NM_001114089 NM_001247 AK303786 CR936750 AK293256 AK128412 AK300028 AF039916 AK300514 CR936765 AL834158 BC025980 AY327581	-146417	+	CU680756 AK075023 AK290815 AK293495 TSC_hg19_v1_chr20_-_25371426	48598	-	TSC_hg19_v1_chr20_-_25371452 BC014049 NM_001042472 NM_015600	48739	-	BC012542 NM_021067 TSC_hg19_v1_chr20_+_25388323	65535	+	NM_002862|PYGB|5834|phosphorylase, glycogen; brain##AK309036|PYGB|5834|phosphorylase, glycogen; brain##AK299697|PYGB|5834|phosphorylase, glycogen; brain##BC017045|PYGB|5834|phosphorylase, glycogen; brain##J03544|PYGB|5834|phosphorylase, glycogen; brain##BC030795|PYGB|5834|phosphorylase, glycogen; brain##AB209080|PYGB|5834|phosphorylase, glycogen; brain##U47025|PYGB|5834|phosphorylase, glycogen; brain##DQ894674|PYGB|5834|phosphorylase, glycogen; brain##EU176283|PYGB|5834|phosphorylase, glycogen; brain##AK302395|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK297954|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK308626|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001114089|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##NM_001247|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK303786|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936750|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK293256|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK128412|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300028|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AF039916|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK300514|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##CR936765|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AL834158|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##BC025980|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AY327581|ENTPD6|955|ectonucleoside triphosphate diphosphohydrolase 6 (putative)##AK075023|ABHD12|26090|abhydrolase domain containing 12##AK290815|ABHD12|26090|abhydrolase domain containing 12##AK293495|ABHD12|26090|abhydrolase domain containing 12##BC014049|ABHD12|26090|abhydrolase domain containing 12##NM_001042472|ABHD12|26090|abhydrolase domain containing 12##NM_015600|ABHD12|26090|abhydrolase domain containing 12##BC012542|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)##NM_021067|GINS1|9837|GINS complex subunit 1 (Psf1 homolog)	0.999644	0.0	
chr4	77528734	77528875	reg1004448.p1	7.347	+	AB055660 NM_020859	-172552	+	BC035224 NM_001042784	-200347	-	TSC_hg19_v1_chr4_+_77227894 DQ891974 DQ895165 CU692542	-300903	+	AK027744 TSC_hg19_v1_chr4_+_77610613	81807	+	TSC_hg19_v1_chr4_+_77610738 AK304103	81947	+	NM_001029870 BC137241 BC137255	290235	-	AB055660|SHROOM3|57619|shroom family member 3##NM_020859|SHROOM3|57619|shroom family member 3##BC035224|CCDC158|339965|coiled-coil domain containing 158##NM_001042784|CCDC158|339965|coiled-coil domain containing 158##DQ891974|STBD1|8987|starch binding domain 1##DQ895165|STBD1|8987|starch binding domain 1##AK027744|SHROOM3|57619|shroom family member 3##AK304103|SHROOM3|57619|shroom family member 3##NM_001029870|ANKRD56|345079|ankyrin repeat domain 56##BC137241|ANKRD56|345079|ankyrin repeat domain 56##BC137255|ANKRD56|345079|ankyrin repeat domain 56	0.835418	0.0	denovo_WM_7:34:0.311	denovo_WM_7:36:0.525
chr8	64134942	64135094	reg1004843.p2	7.347	+	TSC_hg19_v1_chr8_+_64081201 AL831816 AK056219 BC037492 AL832335	-53818	+	TSC_hg19_v1_chr8_+_64081179 NM_152758 BC052970 AK127574 AL832005 BX537996	-53874	+	CU691280 U21938 TSC_hg19_v1_chr8_-_63998613 BC041784 D49488 BC058000 NM_000370	-136391	-	NM_152414 AK293979	1357840	+	TSC_hg19_v1_chr8_+_65493611 AK091333	1358646	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	1576261	-	AL831816|YTHDF3|253943|YTH domain family, member 3##AK056219|YTHDF3|253943|YTH domain family, member 3##BC037492|YTHDF3|253943|YTH domain family, member 3##AL832335|YTHDF3|253943|YTH domain family, member 3##NM_152758|YTHDF3|253943|YTH domain family, member 3##BC052970|YTHDF3|253943|YTH domain family, member 3##AK127574|YTHDF3|253943|YTH domain family, member 3##AL832005|YTHDF3|253943|YTH domain family, member 3##BX537996|YTHDF3|253943|YTH domain family, member 3##U21938|TTPA|7274|tocopherol (alpha) transfer protein##BC041784|TTPA|7274|tocopherol (alpha) transfer protein##D49488|TTPA|7274|tocopherol (alpha) transfer protein##BC058000|TTPA|7274|tocopherol (alpha) transfer protein##NM_000370|TTPA|7274|tocopherol (alpha) transfer protein##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1	1.684952	0.650882	denovo_WM_7:8:0.682	CTCF.p2:-43:0.651	denovo_WM_7:-68:0.220	denovo_WM_7:-69:0.511
chrX	118824719	118824899	reg1005324.p1	7.347	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-84981	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-97827	-	BC042021 NM_181777	-110512	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	2276	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	2323	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	2370	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.311472	0.0	
chr10	88974602	88974708	reg1004185.p1	7.346	+	TSC_hg19_v1_chr10_+_88854962 AK022978 NM_019054	-119722	+	TSC_hg19_v1_chr10_-_88854695 NM_005271	-119895	-	AK311722 TSC_hg19_v1_chr10_-_88854647 AK297456	-120002	-	BC092519 NM_001099338 AB095940	10575	+	TSC_hg19_v1_chr10_-_89102098 AK091716	127441	-	TSC_hg19_v1_chr10_-_89102128 AK309777 AK311174	127486	-	AK022978|FAM35A|54537|family with sequence similarity 35, member A##NM_019054|FAM35A|54537|family with sequence similarity 35, member A##NM_005271|GLUD1|2746|glutamate dehydrogenase 1##AK311722|GLUD1|2746|glutamate dehydrogenase 1##AK297456|GLUD1|2746|glutamate dehydrogenase 1##BC092519|FAM22A|728118|family with sequence similarity 22, member A##NM_001099338|FAM22A|728118|family with sequence similarity 22, member A##AB095940|FAM22D|728130|family with sequence similarity 22, member D##AK309777|LOC728190|728190|uncharacterized LOC728190##AK311174|LOC728190|728190|uncharacterized LOC728190	1.108859	0.959366	CTCF.p2:-17:0.959	denovo_WM_7:29:0.496	denovo_WM_7:32:0.335
chr5	127418019	127418199	reg1000614.p1	7.344	+	NM_001127385 AB219832 BC071790	-429384	+	NM_001048252 AB219764	-433386	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-558915	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	654	-	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	1250	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	1364	+	NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.998855	0.0	denovo_WM_7:-44:0.314	denovo_WM_7:-45:0.314	denovo_WM_7:-46:0.314
chr2	231087442	231087622	reg1003348.p1	7.343	+	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	-2817	-	BC065524 BC034382 AK055356 TSC_hg19_v1_chr2_-_230933641 NM_152527	-153866	-	TSC_hg19_v1_chr2_+_230787218 BC017869 BC022538 NM_174899 BC033935 AK289655 AK309702	-300315	+	AK301097 NM_001185015	2911	-	AK301317 AK301267 NM_001005176 NM_007237 U36499 U36500 U63420 BC105744 BC105960 BC105743 BC054890 BC070160 BC038091	2931	+	TSC_hg19_v1_chr2_+_231191907 NM_138402	104394	+	AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##BC065524|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC034382|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AK055356|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##NM_152527|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC017869|FBXO36|130888|F-box protein 36##BC022538|FBXO36|130888|F-box protein 36##NM_174899|FBXO36|130888|F-box protein 36##BC033935|FBXO36|130888|F-box protein 36##AK289655|FBXO36|130888|F-box protein 36##AK309702|FBXO36|130888|F-box protein 36##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein##AK301317|SP140|11262|SP140 nuclear body protein##AK301267|SP140|11262|SP140 nuclear body protein##NM_001005176|SP140|11262|SP140 nuclear body protein##NM_007237|SP140|11262|SP140 nuclear body protein##U36499|SP140|11262|SP140 nuclear body protein##U36500|SP140|11262|SP140 nuclear body protein##U63420|SP140|11262|SP140 nuclear body protein##BC105744|SP140|11262|SP140 nuclear body protein##BC105960|SP140|11262|SP140 nuclear body protein##BC105743|SP140|11262|SP140 nuclear body protein##BC054890|SP140|11262|SP140 nuclear body protein##BC070160|SP140|11262|SP140 nuclear body protein##BC038091|SP140|11262|SP140 nuclear body protein##NM_138402|SP140L|93349|SP140 nuclear body protein-like	0.997603	0.0	
chr12	82921123	82921236	reg1004569.p1	7.342	+	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	-168870	+	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	-169003	-	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-768070	-	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	159521	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	159738	+	TSC_hg19_v1_chr12_+_83081158 AK299771 BC093852 BC143378 BC093854 AK315285 AB463319 AM393141	160082	+	NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK299771|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093852|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC143378|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093854|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK315285|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AM393141|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.0	0.768869	CTCF.p2:-27:0.769
chr19	11203583	11203708	reg1005146.p1	7.342	+	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	-3460	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	-3513	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	-3568	+	AY456387 TSC_hg19_v1_chr19_-_11266459 AK075287 AK303157 AK303266 BC105037 BC105039 NM_182513	62822	-	AB528156 AY639929 CU687364 NM_015493	101580	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	104613	-	AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AY456387|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK075287|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303157|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303266|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105037|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105039|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_182513|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2	0.62901	0.0	denovo_WM_7:72:0.350
chr3	119279154	119279334	reg1004126.p1	7.342	+	M27533 BC042665 AK292129 NM_005191	-803	-	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	-61771	+	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	-91419	+	TSC_hg19_v1_chr3_+_119298355 AK304560 AK291787	19151	+	BC063883 NM_001125 TSC_hg19_v1_chr3_+_119298606	19321	+	NM_001206960 NM_001206961 NM_015900 AK301880 AK222705 AK313519 BC035347 BC047703 U37591 AF035268 AF035269 AB527604 CU690470	37483	+	M27533|CD80|941|CD80 molecule##BC042665|CD80|941|CD80 molecule##AK292129|CD80|941|CD80 molecule##NM_005191|CD80|941|CD80 molecule##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##AK304560|ADPRH|141|ADP-ribosylarginine hydrolase##AK291787|ADPRH|141|ADP-ribosylarginine hydrolase##BC063883|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001125|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001206960|PLA1A|51365|phospholipase A1 member A##NM_001206961|PLA1A|51365|phospholipase A1 member A##NM_015900|PLA1A|51365|phospholipase A1 member A##AK301880|PLA1A|51365|phospholipase A1 member A##AK222705|PLA1A|51365|phospholipase A1 member A##AK313519|PLA1A|51365|phospholipase A1 member A##BC035347|PLA1A|51365|phospholipase A1 member A##BC047703|PLA1A|51365|phospholipase A1 member A##U37591|PLA1A|51365|phospholipase A1 member A##AF035268|PLA1A|51365|phospholipase A1 member A##AF035269|PLA1A|51365|phospholipase A1 member A	0.993773	0.0	
chr12	8089102	8089282	reg1000752.p2	7.341	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-426	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-45424	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-63726	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	96298	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	129761	-	TSC_hg19_v1_chr12_-_8219032 U62027	129824	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.0	0.0	
chr21	34778869	34779002	reg1004934.p2	7.341	+	TSC_hg19_v1_chr21_+_34775780 AB463788 DQ892320 DQ895522	-3122	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	-3187	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	-3203	+	TSC_hg19_v1_chr21_-_34787167 DQ655977	8273	-	TSC_hg19_v1_chr21_-_34852209 AK310701	73252	-	TSC_hg19_v1_chr21_-_34852239 AY358634 BC000569 AK309977 BX537378 AF045606	73314	-	DQ892320|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##DQ895522|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK310701|TMEM50B|757|transmembrane protein 50B##AY358634|TMEM50B|757|transmembrane protein 50B##BC000569|TMEM50B|757|transmembrane protein 50B##AK309977|TMEM50B|757|transmembrane protein 50B##AF045606|TMEM50B|757|transmembrane protein 50B	1.50804	0.0	denovo_WM_7:2:0.238	denovo_WM_7:27:0.314	denovo_WM_7:28:0.314	denovo_WM_7:29:0.314
chr7	127325847	127325986	reg1005611.p1	7.341	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	-33580	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	-33680	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	-33734	+	BC111561 BC111745 AF196976 AJ297858 NM_022143 AK172751 TSC_hg19_v1_chr7_-_127671066 AK314047	345120	-	NM_000230 U43653 TSC_hg19_v1_chr7_+_127881332 AK313553 BC060830 BC069323 BC069452 BC069527	555417	+	CU680694 TSC_hg19_v1_chr7_-_127983862	657938	-	BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC111561|LRRC4|64101|leucine rich repeat containing 4##BC111745|LRRC4|64101|leucine rich repeat containing 4##AF196976|LRRC4|64101|leucine rich repeat containing 4##AJ297858|LRRC4|64101|leucine rich repeat containing 4##NM_022143|LRRC4|64101|leucine rich repeat containing 4##AK172751|LRRC4|64101|leucine rich repeat containing 4##AK314047|LRRC4|64101|leucine rich repeat containing 4##NM_000230|LEP|3952|leptin##U43653|LEP|3952|leptin##AK313553|LEP|3952|leptin##BC060830|LEP|3952|leptin##BC069323|LEP|3952|leptin##BC069452|LEP|3952|leptin##BC069527|LEP|3952|leptin	0.995753	0.0	denovo_WM_7:33:0.233	denovo_WM_7:34:0.689
chr15	23482261	23482406	reg1005895.p1	7.340	+	TSC_hg19_v1_chr15_-_23378229 AF041081 AF041080	-104089	-	TSC_hg19_v1_chr15_-_23378205 AK308640	-104143	-	DQ309040 BC048987 TSC_hg19_v1_chr15_-_23208467	-273922	-	NM_005664	328120	+	AK309383 TSC_hg19_v1_chr15_+_23810820 BC044639 BC013970 BC070293 EU446987 CU692226	328535	+	NM_019066 TSC_hg19_v1_chr15_-_23893004	410671	-	AF041081|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##AF041080|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##AK308640|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##DQ309040|WHAMMP3|339005|WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3##BC048987|WHAMMP3|339005|WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3##NM_005664|MKRN3|7681|makorin ring finger protein 3##BC044639|MKRN3|7681|makorin ring finger protein 3##BC070293|MKRN3|7681|makorin ring finger protein 3##EU446987|MKRN3|7681|makorin ring finger protein 3##NM_019066|MAGEL2|54551|MAGE-like 2	0.105642	0.994178	CTCF.p2:60:0.994
chr12	123030477	123030638	reg1003804.p2	7.339	+	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-18753	+	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	-19049	-	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	-45039	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	157315	-	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	170821	-	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	184448	-	AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1	0.999807	0.0	denovo_WM_7:-50:0.457	denovo_WM_7:-51:0.457
chr11	66814352	66814459	reg1004616.p1	7.338	+	NM_177963 AK289672 AK289727 BC037406	-23553	+	AK315810 NM_001177880	-24216	+	AK026328 NM_001136485	-71655	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	9881	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	9935	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	72334	+	NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##AK315810|SYT12|91683|synaptotagmin XII##NM_001177880|SYT12|91683|synaptotagmin XII##AK026328|C11orf86|254439|chromosome 11 open reading frame 86##NM_001136485|C11orf86|254439|chromosome 11 open reading frame 86##NM_014578|RHOD|29984|ras homolog gene family, member D##BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A	0.965883	0.0	denovo_WM_7:42:0.746
chr1	235151880	235152060	reg1004121.p3	7.338	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-256196	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-406724	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-408112	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	140119	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	140261	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	172593	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	1.989911	0.0	denovo_WM_7:34:0.302	denovo_WM_7:35:0.244	denovo_WM_7:52:0.243	denovo_WM_7:53:0.301
chr2	135040612	135040792	reg1004855.p1	7.336	+	NM_002410 D17716 AF113921	-28817	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-714664	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-861348	-	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	435854	-	AK125008 NM_138326 BC016018 BC107420 AB071418	555516	+	TSC_hg19_v1_chr2_+_135676397 AK294889 NM_001241 NM_058241 AF048731 AK292913 BC114366	635695	+	NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AK294889|CCNT2|905|cyclin T2##NM_001241|CCNT2|905|cyclin T2##NM_058241|CCNT2|905|cyclin T2##AF048731|CCNT2|905|cyclin T2##AK292913|CCNT2|905|cyclin T2##BC114366|CCNT2|905|cyclin T2	0.0	0.0	
chr6	33476241	33476361	reg1005386.p1	7.336	+	TSC_hg19_v1_chr6_+_33422352 AK313571 AK122644 NM_152735 BC014978	-53929	+	AK094225 NM_006772 AB067525 AK307888 AB385518	-88358	+	NM_001014433 NM_001014837 NM_001014838 NM_001014840 NM_015921 TSC_hg19_v1_chr6_-_33386080	-90221	-	U23765 U16811 TSC_hg19_v1_chr6_-_33547998 X84213 BC004431 BC032789 BC110337 AK091807 AK292093	71614	-	TSC_hg19_v1_chr6_-_33548037 AK303422 AK293547 NM_001188	71742	-	TSC_hg19_v1_chr6_+_33589123 D26351 NM_002224 BC146646 U01062	112893	+	AK313571|ZBTB9|221504|zinc finger and BTB domain containing 9##AK122644|ZBTB9|221504|zinc finger and BTB domain containing 9##NM_152735|ZBTB9|221504|zinc finger and BTB domain containing 9##BC014978|ZBTB9|221504|zinc finger and BTB domain containing 9##AK094225|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##NM_006772|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##AK307888|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##NM_001014433|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014837|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014838|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014840|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_015921|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##U23765|BAK1|578|BCL2-antagonist/killer 1##U16811|BAK1|578|BCL2-antagonist/killer 1##X84213|BAK1|578|BCL2-antagonist/killer 1##BC004431|BAK1|578|BCL2-antagonist/killer 1##BC032789|BAK1|578|BCL2-antagonist/killer 1##BC110337|BAK1|578|BCL2-antagonist/killer 1##AK091807|BAK1|578|BCL2-antagonist/killer 1##AK292093|BAK1|578|BCL2-antagonist/killer 1##AK303422|BAK1|578|BCL2-antagonist/killer 1##AK293547|BAK1|578|BCL2-antagonist/killer 1##NM_001188|BAK1|578|BCL2-antagonist/killer 1##D26351|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##NM_002224|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##BC146646|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##U01062|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3	0.066922	0.0	
chr10	103766932	103767066	reg1003771.p1	7.335	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-163392	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-167387	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-188781	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	48913	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	58143	+	AK300588 TSC_hg19_v1_chr10_-_103874641	107620	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	2.956876	0.0	denovo_WM_7:-59:0.980	denovo_WM_7:-74:0.981
chr2	178155171	178155295	reg1003938.p2	7.335	+	AK314816 NM_006164	-25375	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	-25857	-	AK311688 NM_001145412 NM_001145413	-26662	-	TSC_hg19_v1_chr2_-_178257411 BC093095 AL833088 AK126517	102174	-	AK309714 TSC_hg19_v1_chr2_+_178257487 NM_003659	102196	+	TSC_hg19_v1_chr2_+_178257497 AK225439 AK314259 Y09443 BC141820 AY544121 AK296239 AK316240	102396	+	AK314816|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_006164|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AL833088|LOC100130691|100130691|uncharacterized LOC100130691##AK126517|LOC100130691|100130691|uncharacterized LOC100130691##AK309714|AGPS|8540|alkylglycerone phosphate synthase##NM_003659|AGPS|8540|alkylglycerone phosphate synthase##AK314259|AGPS|8540|alkylglycerone phosphate synthase##Y09443|AGPS|8540|alkylglycerone phosphate synthase##BC141820|AGPS|8540|alkylglycerone phosphate synthase##AY544121|AGPS|8540|alkylglycerone phosphate synthase##AK296239|AGPS|8540|alkylglycerone phosphate synthase##AK316240|AGPS|8540|alkylglycerone phosphate synthase	0.473935	0.0	denovo_WM_7:25:0.429
chr12	95510998	95511145	reg1005507.p1	7.334	+	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	-43773	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	-113555	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	-113601	-	TSC_hg19_v1_chr12_-_95611206 BC125225 BC125226 BX538322 AK124904 NM_018351	100165	-	TSC_hg19_v1_chr12_+_95611582 NM_017599 AK001338 AK225303 AK309943 AK225356 BC014443 AK307864 AL137497 BC064939 BC028597	100623	+	TSC_hg19_v1_chr12_+_95676175 AL133113	165147	+	M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC125225|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BC125226|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BX538322|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##AK124904|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##NM_018351|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##NM_017599|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK001338|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225303|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK309943|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225356|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC014443|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK307864|VEZT|55591|vezatin, adherens junctions transmembrane protein##AL137497|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC064939|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC028597|VEZT|55591|vezatin, adherens junctions transmembrane protein##AL133113|VEZT|55591|vezatin, adherens junctions transmembrane protein	0.376303	0.995662	CTCF.p2:7:0.996	denovo_WM_7:-52:0.364
chr6	22036821	22036984	reg1004011.p1	7.334	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-370243	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-442530	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1502179	+	BC015850 NM_000948	260827	-	X54394 X54393 GQ305133 M58594 NM_001163558	266145	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	532823	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	1.09344	0.0	denovo_WM_7:16:0.302	denovo_WM_7:17:0.311	denovo_WM_7:18:0.379
chr17	5135893	5136051	reg1004333.p1	7.333	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-40592	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-40799	-	AY143550 NM_004505 X63546 X63547	-104286	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	2129	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	49694	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	186953	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.981476	0.0	denovo_WM_7:44:0.873
chr6	88502491	88502597	reg1003669.p1	7.333	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-90556	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-90596	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-90635	-	BC029488 NM_030960 AF203447	254986	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	352492	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	373222	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	1.851089	0.0	denovo_WM_7:55:0.229	denovo_WM_7:56:0.229	denovo_WM_7:57:0.229	denovo_WM_7:58:0.229	denovo_WM_7:-95:0.812
chr11	118065040	118065145	reg1004499.p1	7.332	+	NM_004588 TSC_hg19_v1_chr11_-_118047340	-17750	-	AF007783 BT019487 DQ892426 DQ892634 DQ895640 U87555 AY358945 BC036793 AF049498 AK308834 AK313891 TSC_hg19_v1_chr11_-_118047330	-17855	-	AY149967 AK314531 NM_001142348 NM_174934	-41511	-	AK094399 NM_153206	18981	-	AK090409 AY138965 AY358362 AY093686 AK298722 AK300851 AK301099 AJ515553 NM_001098526	30666	-	TSC_hg19_v1_chr11_-_118123036 HQ258603 AY358626 NM_198275 AK095399 AK289390 AK296951 BC031223 AK304292 AK310966 BC113586 BC143897	57958	-	NM_004588|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AF007783|SCN2B|6327|sodium channel, voltage-gated, type II, beta##BT019487|SCN2B|6327|sodium channel, voltage-gated, type II, beta##DQ892426|SCN2B|6327|sodium channel, voltage-gated, type II, beta##DQ892634|SCN2B|6327|sodium channel, voltage-gated, type II, beta##DQ895640|SCN2B|6327|sodium channel, voltage-gated, type II, beta##U87555|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AY358945|SCN2B|6327|sodium channel, voltage-gated, type II, beta##BC036793|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AF049498|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AK308834|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AK313891|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AY149967|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##AK314531|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##NM_001142348|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##NM_174934|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##AK094399|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##NM_153206|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK090409|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AY138965|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AY358362|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AY093686|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK298722|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK300851|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK301099|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AJ515553|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##NM_001098526|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##HQ258603|MPZL3|196264|myelin protein zero-like 3##AY358626|MPZL3|196264|myelin protein zero-like 3##NM_198275|MPZL3|196264|myelin protein zero-like 3##AK095399|MPZL3|196264|myelin protein zero-like 3##AK289390|MPZL3|196264|myelin protein zero-like 3##AK296951|MPZL3|196264|myelin protein zero-like 3##BC031223|MPZL3|196264|myelin protein zero-like 3##AK304292|MPZL3|196264|myelin protein zero-like 3##AK310966|MPZL3|196264|myelin protein zero-like 3##BC113586|MPZL3|196264|myelin protein zero-like 3##BC143897|MPZL3|196264|myelin protein zero-like 3	0.0	0.0	
chrY	2390164	2390273	reg1003784.p2	7.332	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-21230	-	BC015030 NM_001171135	-21639	-	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	-706215	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	169094	+	S56543 S53156 AB464705 EU446863 BC074923 BC074924 L10101 NM_003140	265416	-	TSC_hg19_v1_chrY_+_2709618 NM_001008	319391	+	BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##S56543|SRY|6736|sex determining region Y##S53156|SRY|6736|sex determining region Y##EU446863|SRY|6736|sex determining region Y##BC074923|SRY|6736|sex determining region Y##BC074924|SRY|6736|sex determining region Y##L10101|SRY|6736|sex determining region Y##NM_003140|SRY|6736|sex determining region Y##NM_001008|RPS4Y1|6192|ribosomal protein S4, Y-linked 1	0.997714	0.0	denovo_WM_7:-52:0.235	denovo_WM_7:-53:0.238	denovo_WM_7:-54:0.239	denovo_WM_7:-55:0.241
chr2	230865347	230865527	reg1002075.p2	7.331	+	TSC_hg19_v1_chr2_+_230787218 BC017869 BC022538 NM_174899 BC033935 AK289655 AK309702	-78220	+	TSC_hg19_v1_chr2_-_230786712 AK310971	-78688	-	BC113891 BC114556 TSC_hg19_v1_chr2_-_230786683 D28476 NM_004238 BC037956 AK302468	-78776	-	BC065524 BC034382 AK055356 TSC_hg19_v1_chr2_-_230933641 NM_152527	68229	-	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	219278	-	AK301097 NM_001185015	225006	-	BC017869|FBXO36|130888|F-box protein 36##BC022538|FBXO36|130888|F-box protein 36##NM_174899|FBXO36|130888|F-box protein 36##BC033935|FBXO36|130888|F-box protein 36##AK289655|FBXO36|130888|F-box protein 36##AK309702|FBXO36|130888|F-box protein 36##AK310971|TRIP12|9320|thyroid hormone receptor interactor 12##BC113891|TRIP12|9320|thyroid hormone receptor interactor 12##BC114556|TRIP12|9320|thyroid hormone receptor interactor 12##D28476|TRIP12|9320|thyroid hormone receptor interactor 12##NM_004238|TRIP12|9320|thyroid hormone receptor interactor 12##BC037956|TRIP12|9320|thyroid hormone receptor interactor 12##AK302468|TRIP12|9320|thyroid hormone receptor interactor 12##BC065524|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC034382|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AK055356|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##NM_152527|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein	0.0	0.0	
chr7	152365112	152365205	reg1002353.p1	7.330	+	TSC_hg19_v1_chr7_+_152161285 BC036622	-203919	+	TSC_hg19_v1_chr7_-_152133074 NM_170606	-232077	-	TSC_hg19_v1_chr7_-_152133040 AY024361	-232166	-	AB590731 CU692064 TSC_hg19_v1_chr7_-_152373227 BC042137 AK313607 Y08837 AF035587 NM_005431	8050	-	TSC_hg19_v1_chr7_+_152456872 NM_001040135 NM_020445 AK315534 BC008682 AK294292 AK316078 AF086920 BC015207 AF023453 CU677239 CU679037 DQ894754 EU176295	91735	+	TSC_hg19_v1_chr7_+_153584383 BX647966 NM_001039350	1219242	+	BC036622|LOC100128822|100128822|uncharacterized LOC100128822##NM_170606|MLL3|58508|myeloid/lymphoid or mixed-lineage leukemia 3##AY024361|MLL3|58508|myeloid/lymphoid or mixed-lineage leukemia 3##BC042137|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##AK313607|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##Y08837|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##AF035587|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##NM_005431|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##NM_001040135|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##NM_020445|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK315534|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC008682|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK294292|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK316078|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AF086920|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC015207|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AF023453|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##DQ894754|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##EU176295|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BX647966|DPP6|1804|dipeptidyl-peptidase 6##NM_001039350|DPP6|1804|dipeptidyl-peptidase 6	0.993768	0.0	denovo_WM_7:-37:0.813
chr8	135725141	135725285	reg1001156.p2	7.330	+	TSC_hg19_v1_chr8_-_135725053 AB463359	-134	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	-16419	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	-1141116	-	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	61	-	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	744445	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	744988	+	AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3	0.893781	0.0	denovo_WM_7:2:0.566
chr5	77163022	77163147	reg1005966.p1	7.329	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-90952	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-228570	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-228655	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	427341	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	427393	-	TSC_hg19_v1_chr5_-_77590495 U81504	427408	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.999644	0.17442	
chr8	80963029	80963168	reg1005418.p1	7.329	+	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	-20596	-	AF311883 BT020065 AB489173 CU674904 AF151522 AF176422 AJ272214 BC001873 AK074641 AK313271 AF232239 TSC_hg19_v1_chr8_-_80680006 AK092437 AK226041 AF254637 NM_001040708 NM_012258	-283101	-	AK292737 TSC_hg19_v1_chr8_+_80523376 BC006302 S82024 AB528346 BT020034 CR456833 DQ892719 DQ895968 CU675343	-439695	+	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	29931	-	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	120672	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	435386	+	AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AF311883|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT020065|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF151522|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF176422|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AJ272214|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BC001873|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK074641|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK313271|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF232239|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK092437|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK226041|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF254637|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_001040708|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_012258|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK292737|STMN2|11075|stathmin-like 2##BC006302|STMN2|11075|stathmin-like 2##S82024|STMN2|11075|stathmin-like 2##BT020034|STMN2|11075|stathmin-like 2##CR456833|STMN2|11075|stathmin-like 2##DQ892719|STMN2|11075|stathmin-like 2##DQ895968|STMN2|11075|stathmin-like 2##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10	0.0	0.0	
chr1	112298375	112298523	reg1004312.p2	7.328	+	AL137199 NM_198926 AK293989 TSC_hg19_v1_chr1_-_112298450	-14	-	TSC_hg19_v1_chr1_+_112298189 NM_007204 BC034953 AF171063	-230	+	AB528568 CU689180 AL137198 AK295012 BC031558 TSC_hg19_v1_chr1_-_112282012 AK055667 NM_019099	-16494	-	TSC_hg19_v1_chr1_+_112298524 AK301697 AK001506 BC031062 BC011556 AF106019 AF155803 AK314312 DQ892249 DQ895449 CU679958	100	+	AY863198 AF120491 NM_004980 NM_172198	233273	-	NM_018704 TSC_hg19_v1_chr1_+_112938844 AK023340	640377	+	AL137199|FAM212B|55924|family with sequence similarity 212, member B##NM_198926|FAM212B|55924|family with sequence similarity 212, member B##AK293989|FAM212B|55924|family with sequence similarity 212, member B##NM_007204|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC034953|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF171063|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AL137198|FAM212B|55924|family with sequence similarity 212, member B##AK295012|FAM212B|55924|family with sequence similarity 212, member B##BC031558|FAM212B|55924|family with sequence similarity 212, member B##AK055667|FAM212B|55924|family with sequence similarity 212, member B##NM_019099|FAM212B|55924|family with sequence similarity 212, member B##AK301697|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK001506|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC031062|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC011556|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF106019|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF155803|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK314312|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ892249|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ895449|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF120491|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_004980|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_172198|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_018704|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK023340|CTTNBP2NL|55917|CTTNBP2 N-terminal like	0.0	0.0	
chr17	64466259	64466364	reg1003405.p2	7.328	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-167384	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-167561	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-240786	-	AK290171 TSC_hg19_v1_chr17_+_64831234	364924	+	BC101633 NM_145811 BC101607 AF361351 AF458898	407109	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	494578	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.999881	0.0	
chr1	117100745	117100881	reg1004323.p2	7.326	+	TSC_hg19_v1_chr1_-_116961216 AK309389	-139575	-	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	-139623	-	AK296362 NM_001160234	-174822	+	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	12802	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	12864	-	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	109570	-	AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3	1.931797	0.0	denovo_WM_7:-11:0.537	denovo_WM_7:-12:0.395	denovo_WM_7:-28:0.453	denovo_WM_7:-29:0.453
chr22	39403834	39403953	reg1005252.p2	7.326	+	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	-25462	+	NM_001193289 NM_145699 U03891 BC126416 BC144146 CR456393 AB528063 CU012950 CU013238 HQ258100	-50283	+	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	-135589	-	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	6358	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	6433	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	13234	+	AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##NM_001193289|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##NM_145699|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##U03891|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC126416|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC144146|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CR456393|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU012950|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU013238|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##HQ258100|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D	0.0	0.0	
chr1	212113225	212113405	reg1003683.p1	7.325	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-109185	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-109567	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-264407	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	95575	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	95699	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	95803	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	0.883282	0.0	denovo_WM_7:-47:0.869
chr3	45957386	45957554	reg1005022.p2	7.325	+	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	-29415	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-73875	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-119322	-	NM_006564 Y13248	27502	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	79851	-	AB189434 AB189435 NM_001024644 NM_005283	111508	-	NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1	0.0	0.0	
chr12	56614483	56614616	reg1004675.p1	7.324	+	TSC_hg19_v1_chr12_-_56583357 AB209006 NM_001130420 NM_003075 NM_139067	-31202	-	AB384911 BT009924 EU176256 AK315153 TSC_hg19_v1_chr12_-_56583268 BC026222 AK293896 AB209293 U66616 BC013045	-31277	-	TSC_hg19_v1_chr12_-_56563972 BC009067	-50572	-	NM_001242826 BC011626 BC095418 TSC_hg19_v1_chr12_-_56615651 BC036267	1023	-	TSC_hg19_v1_chr12_-_56615718 BC024284 AK300752 NM_005785 NM_194358 AK314811 AK304576 NM_194359	1176	-	TSC_hg19_v1_chr12_+_56618125 NM_024068	3574	+	AB209006|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_001130420|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_003075|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_139067|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BT009924|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##EU176256|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##AK315153|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BC026222|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##AK293896|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##AB209293|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##U66616|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BC013045|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BC009067|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_001242826|RNF41|10193|ring finger protein 41##BC011626|RNF41|10193|ring finger protein 41##BC095418|RNF41|10193|ring finger protein 41##BC036267|RNF41|10193|ring finger protein 41##BC024284|RNF41|10193|ring finger protein 41##AK300752|RNF41|10193|ring finger protein 41##NM_005785|RNF41|10193|ring finger protein 41##NM_194358|RNF41|10193|ring finger protein 41##AK314811|RNF41|10193|ring finger protein 41##AK304576|RNF41|10193|ring finger protein 41##NM_194359|RNF41|10193|ring finger protein 41##NM_024068|OBFC2B|79035|oligonucleotide/oligosaccharide-binding fold containing 2B	0.996832	0.0	denovo_WM_7:-26:0.949
chr10	126659324	126659442	reg1003919.p1	7.322	+	NM_017580	-28692	+	NM_032182 TSC_hg19_v1_chr10_+_126490387 AK296677 D63877 BC008999	-169011	+	TSC_hg19_v1_chr10_-_126480455 CU693146 AL832292 AF318345 BC026167 NM_212554	-178979	-	AF222711 NM_022802	57069	-	TSC_hg19_v1_chr10_-_126849010 AF016507 BC072020	189643	-	BC052276 AL833398 BC002486 TSC_hg19_v1_chr10_-_126849101 NM_001329	189733	-	NM_017580|ZRANB1|54764|zinc finger, RAN-binding domain containing 1##NM_032182|FAM175B|23172|family with sequence similarity 175, member B##AK296677|FAM175B|23172|family with sequence similarity 175, member B##D63877|FAM175B|23172|family with sequence similarity 175, member B##BC008999|FAM175B|23172|family with sequence similarity 175, member B##AL832292|METTL10|399818|methyltransferase like 10##AF318345|METTL10|399818|methyltransferase like 10##BC026167|METTL10|399818|methyltransferase like 10##NM_212554|METTL10|399818|methyltransferase like 10##AF222711|CTBP2|1488|C-terminal binding protein 2##NM_022802|CTBP2|1488|C-terminal binding protein 2##AF016507|CTBP2|1488|C-terminal binding protein 2##BC072020|CTBP2|1488|C-terminal binding protein 2##BC052276|CTBP2|1488|C-terminal binding protein 2##AL833398|CTBP2|1488|C-terminal binding protein 2##BC002486|CTBP2|1488|C-terminal binding protein 2##NM_001329|CTBP2|1488|C-terminal binding protein 2	0.998512	0.0	
chr2	71688065	71688179	reg1004279.p1	7.322	+	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	-7321	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	-129225	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	-184396	+	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	5771	+	AK295683 TSC_hg19_v1_chr2_-_72371202	683077	-	TSC_hg19_v1_chr2_-_72374955 AF252297 AK294814 BC069443 BC109205 FJ467289 NM_019885 CU686818 AK313433	686820	-	NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AF252297|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK294814|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC069443|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC109205|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##FJ467289|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_019885|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK313433|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1	1.977324	0.854852	CTCF.p2:9:0.855	denovo_WM_7:-27:0.792	denovo_WM_7:-44:0.433	denovo_WM_7:-45:0.434
chr6	78532098	78532263	reg1004496.p1	7.322	+	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	-359031	-	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	-1749881	-	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-2073171	+	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	1045075	+	BC064611 TSC_hg19_v1_chr6_-_79675737 AK000712	1143572	-	TSC_hg19_v1_chr6_+_79787573 BC036479	1255380	+	BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC064611|PHIP|55023|pleckstrin homology domain interacting protein##AK000712|PHIP|55023|pleckstrin homology domain interacting protein##BC036479|PHIP|55023|pleckstrin homology domain interacting protein	0.0	0.0	
chr14	60688341	60688482	reg1004619.p1	7.321	+	TSC_hg19_v1_chr14_-_60632103 BC007337 AF151844 AK313285 AL117420 NM_016029	-56277	-	AY359031 TSC_hg19_v1_chr14_-_60632031 BC000637	-56379	-	NM_022495 TSC_hg19_v1_chr14_+_60558640 AK095489	-129584	+	AK097843 NM_177952 AK313337	24060	+	TSC_hg19_v1_chr14_+_60715965 NM_021003 NM_177951	27547	+	TSC_hg19_v1_chr14_+_60715993 S87759 BC026691 AF070670 BC063243 AK308225	27700	+	BC007337|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AF151844|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AK313285|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AL117420|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##NM_016029|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AY359031|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##BC000637|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##NM_022495|C14orf135|64430|chromosome 14 open reading frame 135##AK095489|C14orf135|64430|chromosome 14 open reading frame 135##AK097843|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##NM_177952|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AK313337|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##NM_021003|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##NM_177951|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##S87759|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##BC026691|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AF070670|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##BC063243|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AK308225|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A	2.966446	0.0	denovo_WM_7:-35:0.496	denovo_WM_7:-36:0.496	denovo_WM_7:89:0.922	denovo_WM_7:106:0.719
chr21	31012436	31012616	reg1004540.p2	7.320	+	AF026199 NM_206866	-340790	+	TSC_hg19_v1_chr21_+_30671242 AK313791 BC063307	-341285	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	-341306	+	L19058 NM_000830 NM_175611 AK296404 BC028238	299763	-	BC101503 BC101505 NM_012131 AY358094	526480	-	AB590283 CU676754 DQ892002 DQ895192 BC058004 AY358707 BC020866 AK223512 AK022269 NM_199328	575829	-	AF026199|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_206866|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AK313791|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##BC063307|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##L19058|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_000830|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_175611|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##AK296404|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC028238|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC101503|CLDN17|26285|claudin 17##BC101505|CLDN17|26285|claudin 17##NM_012131|CLDN17|26285|claudin 17##AY358094|CLDN17|26285|claudin 17##DQ892002|CLDN8|9073|claudin 8##DQ895192|CLDN8|9073|claudin 8##BC058004|CLDN8|9073|claudin 8##AY358707|CLDN8|9073|claudin 8##BC020866|CLDN8|9073|claudin 8##AK223512|CLDN8|9073|claudin 8##AK022269|CLDN8|9073|claudin 8##NM_199328|CLDN8|9073|claudin 8	1.900164	0.0	denovo_WM_7:-36:0.245	denovo_WM_7:-37:0.698	denovo_WM_7:-96:0.624
chr4	76837290	76837422	reg1005327.p1	7.320	+	BX648754 AF023456 NM_006239	-13729	-	TSC_hg19_v1_chr4_+_76649846 D86326 NM_003715 BC032654 AB590104 AM392946 AM393489 CU689466 DQ894066 EU176195	-187442	+	TSC_hg19_v1_chr4_+_76649814 AK314289	-187541	+	TSC_hg19_v1_chr4_-_76862135 AB161353 AK309271 BC006388 BC011854 NM_001042402 NM_014435	24773	-	TSC_hg19_v1_chr4_-_76878561 AF132198	41205	-	TSC_hg19_v1_chr4_-_76912093 BC054040 BC063797 AK300074 CR749574 BC107895 AK307540 NM_018115	74728	-	BX648754|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##AF023456|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##NM_006239|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##D86326|USO1|8615|USO1 vesicle docking protein homolog (yeast)##NM_003715|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC032654|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AM392946|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AM393489|USO1|8615|USO1 vesicle docking protein homolog (yeast)##DQ894066|USO1|8615|USO1 vesicle docking protein homolog (yeast)##EU176195|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AK314289|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AB161353|NAAA|27163|N-acylethanolamine acid amidase##AK309271|NAAA|27163|N-acylethanolamine acid amidase##BC006388|NAAA|27163|N-acylethanolamine acid amidase##BC011854|NAAA|27163|N-acylethanolamine acid amidase##NM_001042402|NAAA|27163|N-acylethanolamine acid amidase##NM_014435|NAAA|27163|N-acylethanolamine acid amidase##AF132198|SDAD1|55153|SDA1 domain containing 1##BC054040|SDAD1|55153|SDA1 domain containing 1##BC063797|SDAD1|55153|SDA1 domain containing 1##AK300074|SDAD1|55153|SDA1 domain containing 1##CR749574|SDAD1|55153|SDA1 domain containing 1##BC107895|SDAD1|55153|SDA1 domain containing 1##AK307540|SDAD1|55153|SDA1 domain containing 1##NM_018115|SDAD1|55153|SDA1 domain containing 1	0.939685	0.0	denovo_WM_7:36:0.733
chr16	81850355	81850536	reg1003269.p2	7.319	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-37515	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-37543	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-37548	+	BC019670 AK315652 AK026740 NM_145168	194623	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	218416	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	218487	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.0	0.0	
chr2	157190936	157191079	reg1003696.p1	7.319	+	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	-1844	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	-4317	-	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1635818	+	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	100951	+	TSC_hg19_v1_chr2_+_157291981 AK290057	100998	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	101227	+	S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK290057|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.865551	0.0	denovo_WM_7:14:0.464	denovo_WM_7:15:0.350
chr5	132148675	132148855	reg1005067.p2	7.319	+	AF440763 NM_001098813 TSC_hg19_v1_chr5_-_132113705	-35178	-	TSC_hg19_v1_chr5_-_132112954 BC140759 BC171779 AK057797 AF179995 AF440761 AF440762 D86957 NM_001098811 NM_001098812 NM_015146	-35761	-	TSC_hg19_v1_chr5_+_132083137 AK131553 NM_001039780 BC132837 BC136836 BC144416 BC144417	-65621	+	TSC_hg19_v1_chr5_+_132149022 NM_175873	262	+	BC104914 BC104916 BC143494 AF314142 NM_133456	13167	-	DQ655971 TSC_hg19_v1_chr5_-_132166340 BC040980	17539	-	AF440763|SEPT8|23176|septin 8##NM_001098813|SEPT8|23176|septin 8##BC140759|SEPT8|23176|septin 8##BC171779|SEPT8|23176|septin 8##AK057797|SEPT8|23176|septin 8##AF179995|SEPT8|23176|septin 8##AF440761|SEPT8|23176|septin 8##AF440762|SEPT8|23176|septin 8##D86957|SEPT8|23176|septin 8##NM_001098811|SEPT8|23176|septin 8##NM_001098812|SEPT8|23176|septin 8##NM_015146|SEPT8|23176|septin 8##AK131553|CCNI2|645121|cyclin I family, member 2##NM_001039780|CCNI2|645121|cyclin I family, member 2##BC132837|CCNI2|645121|cyclin I family, member 2##BC136836|CCNI2|645121|cyclin I family, member 2##BC144416|CCNI2|645121|cyclin I family, member 2##BC144417|CCNI2|645121|cyclin I family, member 2##NM_175873|ANKRD43|134548|ankyrin repeat domain 43##BC104914|SHROOM1|134549|shroom family member 1##BC104916|SHROOM1|134549|shroom family member 1##BC143494|SHROOM1|134549|shroom family member 1##AF314142|SHROOM1|134549|shroom family member 1##NM_133456|SHROOM1|134549|shroom family member 1	0.999541	0.0	denovo_WM_7:-28:0.849
chrY	1553806	1553986	reg1000486.p3	7.319	+	AK301844 NM_001173473	-31245	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-32095	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-92927	-	BC043610 GQ280263 NM_178129 AK126147	52142	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	106633	+	NM_004043 U11090	110451	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.176718	0.0	denovo_WM_7:1:0.205
chr11	47382689	47382806	reg1005176.p1	7.318	+	BC136543 BC136546 X84075 BC142685 BC151211 AK291569 AK297843 EF560722 EU747718 EU747719 NM_000256 TSC_hg19_v1_chr11_-_47374254	-8510	-	TSC_hg19_v1_chr11_+_47291683 NM_001135943 NM_130475 NM_130476 BC040484 AB002356 U44953	-91029	+	TSC_hg19_v1_chr11_+_47291234 NM_001135944 NM_003682 NM_130471 NM_130472 NM_130473 NM_130474 AF440100 AF440101 AF440102 AF440103 AF440434 AK292442	-91534	+	AB464244 TSC_hg19_v1_chr11_-_47399956	17195	-	TSC_hg19_v1_chr11_-_47400039 AK310065	17268	-	TSC_hg19_v1_chr11_-_47400097 X52056 NM_001080547 NM_003120	17364	-	BC136543|MYBPC3|4607|myosin binding protein C, cardiac##BC136546|MYBPC3|4607|myosin binding protein C, cardiac##X84075|MYBPC3|4607|myosin binding protein C, cardiac##BC142685|MYBPC3|4607|myosin binding protein C, cardiac##BC151211|MYBPC3|4607|myosin binding protein C, cardiac##AK291569|MYBPC3|4607|myosin binding protein C, cardiac##AK297843|MYBPC3|4607|myosin binding protein C, cardiac##EF560722|MYBPC3|4607|myosin binding protein C, cardiac##EU747718|MYBPC3|4607|myosin binding protein C, cardiac##EU747719|MYBPC3|4607|myosin binding protein C, cardiac##NM_000256|MYBPC3|4607|myosin binding protein C, cardiac##NM_001135943|MADD|8567|MAP-kinase activating death domain##NM_130475|MADD|8567|MAP-kinase activating death domain##NM_130476|MADD|8567|MAP-kinase activating death domain##BC040484|MADD|8567|MAP-kinase activating death domain##AB002356|MADD|8567|MAP-kinase activating death domain##U44953|MADD|8567|MAP-kinase activating death domain##NM_001135944|MADD|8567|MAP-kinase activating death domain##NM_003682|MADD|8567|MAP-kinase activating death domain##NM_130471|MADD|8567|MAP-kinase activating death domain##NM_130472|MADD|8567|MAP-kinase activating death domain##NM_130473|MADD|8567|MAP-kinase activating death domain##NM_130474|MADD|8567|MAP-kinase activating death domain##AF440100|MADD|8567|MAP-kinase activating death domain##AF440101|MADD|8567|MAP-kinase activating death domain##AF440102|MADD|8567|MAP-kinase activating death domain##AF440103|MADD|8567|MAP-kinase activating death domain##AF440434|MADD|8567|MAP-kinase activating death domain##AK292442|MADD|8567|MAP-kinase activating death domain##AK310065|SPI1|6688|spleen focus forming virus (SFFV) proviral integration oncogene spi1##X52056|SPI1|6688|spleen focus forming virus (SFFV) proviral integration oncogene spi1##NM_001080547|SPI1|6688|spleen focus forming virus (SFFV) proviral integration oncogene spi1##NM_003120|SPI1|6688|spleen focus forming virus (SFFV) proviral integration oncogene spi1	1.921167	0.0	denovo_WM_7:-47:0.776	denovo_WM_7:-62:0.297	denovo_WM_7:-66:0.447	denovo_WM_7:-67:0.216
chr9	127624677	127624821	reg1004731.p2	7.318	+	TSC_hg19_v1_chr9_+_127624397 AK056174	-355	+	TSC_hg19_v1_chr9_-_127624226 BC071915 U12465 BC000348 AK291072 BC010919 D28448 NM_007209	-532	-	BC150645 BC171828 BC171830 BC171837 BC127949 TSC_hg19_v1_chr9_+_127615749 NM_001045476	-9025	+	TSC_hg19_v1_chr9_+_127631421 AK315604	6681	+	TSC_hg19_v1_chr9_+_127631493 BC000798 NM_030978 AK308570	6737	+	TSC_hg19_v1_chr9_+_127631514 AF087842 BC000018 BC002418 HQ448697	6783	+	AK056174|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC071915|RPL35|11224|ribosomal protein L35##U12465|RPL35|11224|ribosomal protein L35##BC000348|RPL35|11224|ribosomal protein L35##AK291072|RPL35|11224|ribosomal protein L35##BC010919|RPL35|11224|ribosomal protein L35##D28448|RPL35|11224|ribosomal protein L35##NM_007209|RPL35|11224|ribosomal protein L35##BC150645|WDR38|401551|WD repeat domain 38##BC171828|WDR38|401551|WD repeat domain 38##BC171830|WDR38|401551|WD repeat domain 38##BC171837|WDR38|401551|WD repeat domain 38##BC127949|WDR38|401551|WD repeat domain 38##NM_001045476|WDR38|401551|WD repeat domain 38##AK315604|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC000798|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##NM_030978|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##AF087842|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC000018|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC002418|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##HQ448697|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like	0.998675	0.0	
chr16	3208934	3209064	reg1003357.p1	7.317	+	CU675598 TSC_hg19_v1_chr16_-_3191371	-17640	-	TSC_hg19_v1_chr16_+_3185119 NM_001134655 BC007287 BC116445 AK291789 AK055337 AK289834	-23840	+	TSC_hg19_v1_chr16_+_3185058 NM_004220	-23947	+	BC069335 NM_012360 Y14442	45247	+	AK315036 BC032575 AF060866 TSC_hg19_v1_chr16_-_3285159 BC025293 BC012909 AK056010 NM_001145447 NM_003454	76129	-	Y14443 BC054005 NM_001145448 NM_198088 NM_001145446 NM_198087	76408	-	NM_001134655|ZNF213|7760|zinc finger protein 213##BC007287|ZNF213|7760|zinc finger protein 213##AK291789|ZNF213|7760|zinc finger protein 213##AK055337|ZNF213|7760|zinc finger protein 213##AK289834|ZNF213|7760|zinc finger protein 213##NM_004220|ZNF213|7760|zinc finger protein 213##BC069335|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##NM_012360|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##Y14442|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##AK315036|ZNF200|7752|zinc finger protein 200##BC032575|ZNF200|7752|zinc finger protein 200##AF060866|ZNF200|7752|zinc finger protein 200##BC025293|ZNF200|7752|zinc finger protein 200##BC012909|ZNF200|7752|zinc finger protein 200##AK056010|ZNF200|7752|zinc finger protein 200##NM_001145447|ZNF200|7752|zinc finger protein 200##NM_003454|ZNF200|7752|zinc finger protein 200##Y14443|ZNF200|7752|zinc finger protein 200##BC054005|ZNF200|7752|zinc finger protein 200##NM_001145448|ZNF200|7752|zinc finger protein 200##NM_198088|ZNF200|7752|zinc finger protein 200##NM_001145446|ZNF200|7752|zinc finger protein 200##NM_198087|ZNF200|7752|zinc finger protein 200	0.997696	0.0	denovo_WM_7:4:0.670	denovo_WM_7:5:0.260
chrX	1603806	1603986	reg1000485.p3	7.317	+	AK301844 NM_001173473	-31245	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-32095	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-92927	-	BC043610 GQ280263 NM_178129 AK126147	52142	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	106633	+	NM_004043 U11090	110451	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.176718	0.0	denovo_WM_7:1:0.205
chr15	52850582	52850762	reg1004742.p2	7.316	+	TSC_hg19_v1_chr15_-_52821078 AB290180 AK303660 AK307600 NM_000259 NM_001142495 U90942 Y07759	-29416	-	AF272390 BC144611 BC064841 TSC_hg19_v1_chr15_-_52587968 AK301079 AK304136 NM_018728	-262738	-	AF161352 TSC_hg19_v1_chr15_-_52529707	-320966	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	10387	-	TSC_hg19_v1_chr15_-_52861228 AF084555 BC003418 NM_006628	10560	-	TSC_hg19_v1_chr15_-_52861344 BC100015 AL833077	10705	-	AB290180|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK303660|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK307600|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_000259|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_001142495|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##U90942|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##Y07759|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AF272390|MYO5C|55930|myosin VC##BC144611|MYO5C|55930|myosin VC##BC064841|MYO5C|55930|myosin VC##AK301079|MYO5C|55930|myosin VC##AK304136|MYO5C|55930|myosin VC##NM_018728|MYO5C|55930|myosin VC##AF161352|MYO5C|55930|myosin VC##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AF084555|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC003418|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##NM_006628|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC100015|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AL833077|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa	1.090097	0.0	denovo_WM_7:3:0.755
chr3	10183910	10184047	reg1005772.p1	7.316	+	TSC_hg19_v1_chr3_+_10183517 AB528056	-440	+	AK304002 TSC_hg19_v1_chr3_+_10183487	-480	+	L15409 NM_000551 NM_198156 TSC_hg19_v1_chr3_+_10183474 AK315799 BC058831 BC027957	-576	+	NM_001570 BC125184 AK299033 AK312841 TSC_hg19_v1_chr3_+_10206602 AF026273 AB587544 AJ496794	22622	+	TSC_hg19_v1_chr3_+_10290182 NM_014760	106197	+	TSC_hg19_v1_chr3_+_10290210 D86972	106284	+	AK304002|VHL|7428|von Hippel-Lindau tumor suppressor##L15409|VHL|7428|von Hippel-Lindau tumor suppressor##NM_000551|VHL|7428|von Hippel-Lindau tumor suppressor##NM_198156|VHL|7428|von Hippel-Lindau tumor suppressor##AK315799|VHL|7428|von Hippel-Lindau tumor suppressor##BC058831|VHL|7428|von Hippel-Lindau tumor suppressor##BC027957|VHL|7428|von Hippel-Lindau tumor suppressor##NM_001570|IRAK2|3656|interleukin-1 receptor-associated kinase 2##BC125184|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK299033|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK312841|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AF026273|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AJ496794|IRAK2|3656|interleukin-1 receptor-associated kinase 2##NM_014760|TATDN2|9797|TatD DNase domain containing 2##D86972|TATDN2|9797|TatD DNase domain containing 2	0.990977	0.0	
chr2	157189377	157189557	reg1004871.p1	7.315	+	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	-304	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	-2777	-	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1634278	+	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	102491	+	TSC_hg19_v1_chr2_+_157291981 AK290057	102538	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	102767	+	S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK290057|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.970939	0.0	denovo_WM_7:-7:0.935
chr15	68143521	68143698	reg1004736.p1	7.313	+	NM_001031807	-25669	+	AK293459 NM_001206804	-302268	+	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	-308587	+	AF167160 NM_016166 BC118587 BC121797 TSC_hg19_v1_chr15_+_68346652 AK314515 BC104646	203003	+	TSC_hg19_v1_chr15_+_68346659 BC053685 AB590990 AF077951 EF487997 EF487998 FJ997900 AY826819	203052	+	TSC_hg19_v1_chr15_-_68497633 BX640702 BC009516 AK092628 AK296804 AX747637	354028	-	NM_001031807|SKOR1|390598|SKI family transcriptional corepressor 1##AK293459|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001206804|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5##AF167160|PIAS1|8554|protein inhibitor of activated STAT, 1##NM_016166|PIAS1|8554|protein inhibitor of activated STAT, 1##BC118587|PIAS1|8554|protein inhibitor of activated STAT, 1##BC121797|PIAS1|8554|protein inhibitor of activated STAT, 1##AK314515|PIAS1|8554|protein inhibitor of activated STAT, 1##BC104646|PIAS1|8554|protein inhibitor of activated STAT, 1##BC053685|PIAS1|8554|protein inhibitor of activated STAT, 1##AF077951|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487997|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487998|PIAS1|8554|protein inhibitor of activated STAT, 1##FJ997900|PIAS1|8554|protein inhibitor of activated STAT, 1##AY826819|PIAS1|8554|protein inhibitor of activated STAT, 1##BX640702|CALML4|91860|calmodulin-like 4##BC009516|CALML4|91860|calmodulin-like 4##AK092628|CALML4|91860|calmodulin-like 4##AK296804|CALML4|91860|calmodulin-like 4	1.961482	0.0	denovo_WM_7:-30:0.586	denovo_WM_7:-45:0.611	denovo_WM_7:-47:0.217
chr17	45770930	45771097	reg1004462.p1	7.313	+	TSC_hg19_v1_chr17_+_45727579 DQ892863 DQ896112 AB384802 BT009797	-43429	+	BC036703 TSC_hg19_v1_chr17_+_45727323 AK314780 BC003572 BC024045	-43668	+	L38951 NM_002265 TSC_hg19_v1_chr17_+_45727284	-43729	+	AB018318 BC152407 BC167150 NM_014726	1616	+	TSC_hg19_v1_chr17_+_45773067 BC111418	2026	+	TSC_hg19_v1_chr17_+_45773425 AB383985	2436	+	DQ892863|KPNB1|3837|karyopherin (importin) beta 1##DQ896112|KPNB1|3837|karyopherin (importin) beta 1##BT009797|KPNB1|3837|karyopherin (importin) beta 1##BC036703|KPNB1|3837|karyopherin (importin) beta 1##AK314780|KPNB1|3837|karyopherin (importin) beta 1##BC003572|KPNB1|3837|karyopherin (importin) beta 1##BC024045|KPNB1|3837|karyopherin (importin) beta 1##L38951|KPNB1|3837|karyopherin (importin) beta 1##NM_002265|KPNB1|3837|karyopherin (importin) beta 1##AB018318|TBKBP1|9755|TBK1 binding protein 1##BC152407|TBKBP1|9755|TBK1 binding protein 1##BC167150|TBKBP1|9755|TBK1 binding protein 1##NM_014726|TBKBP1|9755|TBK1 binding protein 1##BC111418|TBKBP1|9755|TBK1 binding protein 1	0.999075	0.0	denovo_WM_7:9:0.314	denovo_WM_7:10:0.314	denovo_WM_7:11:0.314
chr8	8310319	8310462	reg1004358.p1	7.312	+	AK122582 NM_001080826	-71168	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-134502	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-224248	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	249308	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	440548	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	549975	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.975374	0.0	denovo_WM_7:57:0.916
chr13	78775706	78775876	reg1004727.p2	7.311	+	D90402 NM_000115 S57283 AF308156	-226075	-	AF114165 NM_001201397	-281889	-	AF114163 AF114164 TSC_hg19_v1_chr13_-_78493569	-282240	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	394491	+	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	401932	-	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	457502	-	D90402|EDNRB|1910|endothelin receptor type B##NM_000115|EDNRB|1910|endothelin receptor type B##S57283|EDNRB|1910|endothelin receptor type B##AF114165|EDNRB|1910|endothelin receptor type B##NM_001201397|EDNRB|1910|endothelin receptor type B##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219	0.0	0.0	
chr7	74179106	74179237	reg1003832.p1	7.311	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-107049	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-107127	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-107150	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	9181	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	88668	-	TSC_hg19_v1_chr7_-_74306679 BC002581	127504	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.026859	0.0	
chr1	110881599	110881742	reg1005573.p1	7.310	+	AK310193 M64676 TSC_hg19_v1_chr1_+_110754079 BC101769	-127673	+	TSC_hg19_v1_chr1_+_110753347 NM_001039574 NM_004978	-128326	+	NM_001010898 AK289982 TSC_hg19_v1_chr1_+_110693135	-188536	+	AF368062 AF368063 AF368064 NM_001201545 NM_022768 BC098140 BC103493 BC103507 BC103660 TSC_hg19_v1_chr1_+_110882045	324	+	BC047479 TSC_hg19_v1_chr1_+_110882057	387	+	TSC_hg19_v1_chr1_+_110882092 AK022541 BC006397 BC062316	411	+	AK310193|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##M64676|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##BC101769|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_001039574|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_004978|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_001010898|SLC6A17|388662|solute carrier family 6, member 17##AK289982|SLC6A17|388662|solute carrier family 6, member 17##AF368062|RBM15|64783|RNA binding motif protein 15##AF368063|RBM15|64783|RNA binding motif protein 15##AF368064|RBM15|64783|RNA binding motif protein 15##NM_001201545|RBM15|64783|RNA binding motif protein 15##NM_022768|RBM15|64783|RNA binding motif protein 15##BC098140|RBM15|64783|RNA binding motif protein 15##BC103493|RBM15|64783|RNA binding motif protein 15##BC103507|RBM15|64783|RNA binding motif protein 15##BC103660|RBM15|64783|RNA binding motif protein 15##BC047479|RBM15|64783|RNA binding motif protein 15##AK022541|RBM15|64783|RNA binding motif protein 15##BC006397|RBM15|64783|RNA binding motif protein 15##BC062316|RBM15|64783|RNA binding motif protein 15	0.0	0.0	
chr16	70146159	70146277	reg1004692.p2	7.310	+	TSC_hg19_v1_chr16_-_70099842 AK027135 AL833251	-46398	-	AK292860 TSC_hg19_v1_chr16_-_70099722	-46493	-	AF521893 NM_182619 BC141808 AF428259 AF448856 AL833339 AK289884 AK298310 AK074773 EU831776 EU831854 CU687316 AK096051	-161126	+	AB082521 BC150251 NM_017990	1310	+	TSC_hg19_v1_chr16_+_70148247 AK292502 AK302987	2029	+	AF448856 BC039068 NM_173619 AL833339 AK074773 CU687316 BC062573	61886	+	AL833251|PDXDC2P|283970|pyridoxal-dependent decarboxylase domain containing 2, pseudogene##AK292860|PDXDC2P|283970|pyridoxal-dependent decarboxylase domain containing 2, pseudogene##AF521893|CLEC18A|348174|C-type lectin domain family 18, member A##NM_182619|CLEC18A|348174|C-type lectin domain family 18, member A##BC141808|CLEC18A|348174|C-type lectin domain family 18, member A##AF428259|CLEC18A|348174|C-type lectin domain family 18, member A##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK289884|CLEC18A|348174|C-type lectin domain family 18, member A##AK298310|CLEC18A|348174|C-type lectin domain family 18, member A##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##EU831776|CLEC18A|348174|C-type lectin domain family 18, member A##EU831854|CLEC18A|348174|C-type lectin domain family 18, member A##AK096051|CLEC18A|348174|C-type lectin domain family 18, member A##AB082521|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##BC150251|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##NM_017990|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##AK292502|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##AK302987|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##BC039068|CLEC18C|283971|C-type lectin domain family 18, member C##NM_173619|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##BC062573|CLEC18C|283971|C-type lectin domain family 18, member C	0.99566	0.0	denovo_WM_7:12:0.456	denovo_WM_7:13:0.456
chr17	20956450	20956576	reg1004738.p1	7.310	+	TSC_hg19_v1_chr17_-_20946322 AB590105 AB028986 NM_015276	-10241	-	CU686685 BC068597 NM_001004306	-157121	-	AK057473 TSC_hg19_v1_chr17_+_20771859 BC041488 EF565107	-184708	+	TSC_hg19_v1_chr17_+_20978860 AB593144	22368	+	TSC_hg19_v1_chr17_+_21030251 NM_015510 AL117567 AF151851 BC004126 BC009679 AK124055 CR457124	73763	+	TSC_hg19_v1_chr17_-_21117475 BT006768 AK311965 BC020815	160941	-	AB028986|USP22|23326|ubiquitin specific peptidase 22##NM_015276|USP22|23326|ubiquitin specific peptidase 22##BC068597|CCDC144NL|339184|coiled-coil domain containing 144 family, N-terminal like##NM_001004306|CCDC144NL|339184|coiled-coil domain containing 144 family, N-terminal like##NM_015510|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AL117567|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AF151851|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##BC004126|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##BC009679|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AK124055|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##CR457124|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##BT006768|TMEM11|8834|transmembrane protein 11##AK311965|TMEM11|8834|transmembrane protein 11##BC020815|TMEM11|8834|transmembrane protein 11	0.932931	0.0	denovo_WM_7:24:0.208	denovo_WM_7:25:0.403	denovo_WM_7:26:0.290
chr15	91330167	91330271	reg1005173.p2	7.308	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	-69605	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-257023	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-398680	+	NM_002569 X17094	81665	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	97482	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	98054	+	BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene	1.991462	0.0	denovo_WM_7:54:0.250	denovo_WM_7:55:0.674	denovo_WM_7:70:0.821
chr17	1529318	1529463	reg1003657.p1	7.307	+	BC082976 TSC_hg19_v1_chr17_-_1466077 BC027177 D30036 M73704 BC045108 BC068538 NM_006224	-63308	-	TSC_hg19_v1_chr17_-_1420177 AK312844 NM_001135642 NM_016532 NM_130766	-109211	-	TSC_hg19_v1_chr17_-_1419907 DQ892815 DQ896061 AB529166 AK297955 AK303907 AK307293 AB036829 AB036830 AK312585 BC004362	-109424	-	AF289592 TSC_hg19_v1_chr17_-_1531711 AB120364	2250	-	TSC_hg19_v1_chr17_-_1532115 BC027923 NM_152346 BC071859	2754	-	D63483 AK310174 AB052950 AB052949 AB052947 D86864 TSC_hg19_v1_chr17_-_1549050 AK291810 AB052948 BC039735 NM_003693 NM_145350 NM_145352 AK298737	19647	-	BC082976|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC027177|PITPNA|5306|phosphatidylinositol transfer protein, alpha##D30036|PITPNA|5306|phosphatidylinositol transfer protein, alpha##M73704|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC045108|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC068538|PITPNA|5306|phosphatidylinositol transfer protein, alpha##NM_006224|PITPNA|5306|phosphatidylinositol transfer protein, alpha##AK312844|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_001135642|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_016532|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_130766|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ892815|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ896061|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK297955|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK303907|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK307293|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036829|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036830|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK312585|INPP5K|51763|inositol polyphosphate-5-phosphatase K##BC004362|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AF289592|SLC43A2|124935|solute carrier family 43, member 2##AB120364|SLC43A2|124935|solute carrier family 43, member 2##BC027923|SLC43A2|124935|solute carrier family 43, member 2##NM_152346|SLC43A2|124935|solute carrier family 43, member 2##BC071859|SLC43A2|124935|solute carrier family 43, member 2##D63483|SCARF1|8578|scavenger receptor class F, member 1##AK310174|SCARF1|8578|scavenger receptor class F, member 1##AB052950|SCARF1|8578|scavenger receptor class F, member 1##AB052949|SCARF1|8578|scavenger receptor class F, member 1##AB052947|SCARF1|8578|scavenger receptor class F, member 1##D86864|SCARF1|8578|scavenger receptor class F, member 1##AK291810|SCARF1|8578|scavenger receptor class F, member 1##AB052948|SCARF1|8578|scavenger receptor class F, member 1##BC039735|SCARF1|8578|scavenger receptor class F, member 1##NM_003693|SCARF1|8578|scavenger receptor class F, member 1##NM_145350|SCARF1|8578|scavenger receptor class F, member 1##NM_145352|SCARF1|8578|scavenger receptor class F, member 1##AK298737|SCARF1|8578|scavenger receptor class F, member 1	2.996576	0.0	denovo_WM_7:-13:0.238	denovo_WM_7:-64:0.553	denovo_WM_7:-82:0.849
chr11	30367548	30367728	reg1000285.p1	7.306	+	TSC_hg19_v1_chr11_+_30344653 AK096287 NM_152316 BX647617 BC047775	-22986	+	NM_000510 NM_001018080	-115076	+	M55514 TSC_hg19_v1_chr11_-_30038533 AK311228 NM_002233	-329107	-	CU689190 NM_001584 U57911	234341	-	TSC_hg19_v1_chr11_-_30605748 AK309809	238110	-	TSC_hg19_v1_chr11_-_30607762 AB209163 AK314833 NM_001145399	240207	-	AK096287|C11orf46|120534|chromosome 11 open reading frame 46##NM_152316|C11orf46|120534|chromosome 11 open reading frame 46##BX647617|C11orf46|120534|chromosome 11 open reading frame 46##BC047775|C11orf46|120534|chromosome 11 open reading frame 46##NM_000510|FSHB|2488|follicle stimulating hormone, beta polypeptide##NM_001018080|FSHB|2488|follicle stimulating hormone, beta polypeptide##M55514|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##AK311228|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_002233|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_001584|MPPED2|744|metallophosphoesterase domain containing 2##U57911|MPPED2|744|metallophosphoesterase domain containing 2##AK309809|MPPED2|744|metallophosphoesterase domain containing 2##AB209163|MPPED2|744|metallophosphoesterase domain containing 2##AK314833|MPPED2|744|metallophosphoesterase domain containing 2##NM_001145399|MPPED2|744|metallophosphoesterase domain containing 2	0.0	0.0	
chr14	25204276	25204403	reg1005050.p1	7.306	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-100921	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-125478	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-158893	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	314899	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1862649	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	4031889	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.089465	0.997515	CTCF.p2:-36:0.998
chr12	58377046	58377168	reg1006911.p1	7.305	+	BC012776 NM_033276 BC115381 BC115382 TSC_hg19_v1_chr12_+_58335454	-41647	+	TSC_hg19_v1_chr12_+_58335326 BC033881 AF078164	-41771	+	NM_005730	-136361	-	AK301162 AY358295 NM_001136051	936208	-	AY505340 BC126169 BC126171 BC143960 AY358288 NM_153377 TSC_hg19_v1_chr12_-_59314272	937070	-	AK292857 TSC_hg19_v1_chr12_-_59314301	937195	-	BC012776|XRCC6BP1|91419|XRCC6 binding protein 1##NM_033276|XRCC6BP1|91419|XRCC6 binding protein 1##BC115381|XRCC6BP1|91419|XRCC6 binding protein 1##BC115382|XRCC6BP1|91419|XRCC6 binding protein 1##BC033881|XRCC6BP1|91419|XRCC6 binding protein 1##AF078164|XRCC6BP1|91419|XRCC6 binding protein 1##NM_005730|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK301162|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY358295|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##NM_001136051|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY505340|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC126169|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC126171|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC143960|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY358288|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##NM_153377|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AK292857|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3	1.139105	0.692876	CTCF.p2:-3:0.693	denovo_WM_7:53:0.629	denovo_WM_7:55:0.240
chr12	70636467	70636607	reg1005260.p1	7.305	+	AK027671 BC015548 NM_001024647 AK027566	-463753	+	NM_175623 NM_175625 AJ312897 AJ312899 AJ312901	-503354	+	TSC_hg19_v1_chr12_+_70132676 AK314547 NM_022456 NM_175624 AJ312896 AJ312898 AJ312900 AK026201 AK225441 BC014553 BC059358	-503898	+	NM_014515 TSC_hg19_v1_chr12_+_70636809 AK315715 NM_001199302	254	+	AK000662 TSC_hg19_v1_chr12_+_70637212 AF044215 BC011826 BC002597 AF161480	698	+	AK307479 NM_001199303 AK095789	974	+	AK027671|RAB3IP|117177|RAB3A interacting protein (rabin3)##BC015548|RAB3IP|117177|RAB3A interacting protein (rabin3)##NM_001024647|RAB3IP|117177|RAB3A interacting protein (rabin3)##AK027566|RAB3IP|117177|RAB3A interacting protein (rabin3)##NM_175623|RAB3IP|117177|RAB3A interacting protein (rabin3)##NM_175625|RAB3IP|117177|RAB3A interacting protein (rabin3)##AJ312897|RAB3IP|117177|RAB3A interacting protein (rabin3)##AJ312899|RAB3IP|117177|RAB3A interacting protein (rabin3)##AJ312901|RAB3IP|117177|RAB3A interacting protein (rabin3)##AK314547|RAB3IP|117177|RAB3A interacting protein (rabin3)##NM_022456|RAB3IP|117177|RAB3A interacting protein (rabin3)##NM_175624|RAB3IP|117177|RAB3A interacting protein (rabin3)##AJ312896|RAB3IP|117177|RAB3A interacting protein (rabin3)##AJ312898|RAB3IP|117177|RAB3A interacting protein (rabin3)##AJ312900|RAB3IP|117177|RAB3A interacting protein (rabin3)##AK026201|RAB3IP|117177|RAB3A interacting protein (rabin3)##AK225441|RAB3IP|117177|RAB3A interacting protein (rabin3)##BC014553|RAB3IP|117177|RAB3A interacting protein (rabin3)##BC059358|RAB3IP|117177|RAB3A interacting protein (rabin3)##NM_014515|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK315715|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199302|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK000662|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AF044215|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC011826|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC002597|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AF161480|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK307479|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199303|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK095789|CNOT2|4848|CCR4-NOT transcription complex, subunit 2	0.0	0.0	
chr6	42191970	42192150	reg1001125.p1	7.305	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-6443	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-6460	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-6463	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	227763	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	339690	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	339717	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.960316	0.0	denovo_WM_7:31:0.861
chr1	111583125	111583267	reg1004579.p1	7.303	+	TSC_hg19_v1_chr1_-_111506545 AY190122 NM_001006945 NM_018372 CR933637	-76645	-	BC040693 TSC_hg19_v1_chr1_+_111415791 M37033 M60871	-167394	+	NM_000560 TSC_hg19_v1_chr1_+_111415769 AK313582 AK298723	-167441	+	BC049196 NM_001007794 AL833102 TSC_hg19_v1_chr1_+_111682370	99113	+	AL833098 TSC_hg19_v1_chr1_-_111682678 AY358492	99488	-	TSC_hg19_v1_chr1_-_111682718 AY336747 BC091509	99535	-	AY190122|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_001006945|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_018372|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##BC040693|CD53|963|CD53 molecule##M37033|CD53|963|CD53 molecule##M60871|CD53|963|CD53 molecule##NM_000560|CD53|963|CD53 molecule##AK313582|CD53|963|CD53 molecule##AK298723|CD53|963|CD53 molecule##BC049196|CEPT1|10390|choline/ethanolamine phosphotransferase 1##NM_001007794|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833102|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833098|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY358492|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY336747|DRAM2|128338|DNA-damage regulated autophagy modulator 2##BC091509|DRAM2|128338|DNA-damage regulated autophagy modulator 2	1.981275	0.0	denovo_WM_7:-10:0.239	denovo_WM_7:-11:0.239	denovo_WM_7:-12:0.239	denovo_WM_7:-13:0.239	denovo_WM_7:101:0.912
chr22	38003730	38003883	reg1002638.p3	7.300	+	M87842 BC059782 NM_006498 CR456512	-27806	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-47333	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-88499	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	756	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	964	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	1077	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	0.996917	0.0	
chr4	124320494	124320652	reg1004950.p1	7.300	+	TSC_hg19_v1_chr4_+_124317949 AY192146 NM_199327	-2617	+	TSC_hg19_v1_chr4_+_123844255 NM_145207 AF361489 AL832175 AF479656 AK091384 AX746949 BC048217 AM392939 AM393832	-476321	+	AF019632 AK294450 NM_198041	-476433	-	AK026960 BC063856 NM_005841	100	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	1313241	-	NM_024582	1916993	+	AY192146|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_199327|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_145207|SPATA5|166378|spermatogenesis associated 5##AF361489|SPATA5|166378|spermatogenesis associated 5##AL832175|SPATA5|166378|spermatogenesis associated 5##AF479656|SPATA5|166378|spermatogenesis associated 5##AK091384|SPATA5|166378|spermatogenesis associated 5##BC048217|SPATA5|166378|spermatogenesis associated 5##AM392939|SPATA5|166378|spermatogenesis associated 5##AM393832|SPATA5|166378|spermatogenesis associated 5##AF019632|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##AK294450|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##NM_198041|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)	0.018102	0.0	
chr11	64863546	64863670	reg1004460.p2	7.299	+	NM_001242631 AK124141	-7049	-	TSC_hg19_v1_chr11_+_64851731 BC012530 BC012814 AF043611	-11828	+	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	-11902	+	TSC_hg19_v1_chr11_+_64863684 AF024631 NM_013265	37	+	TSC_hg19_v1_chr11_+_64863710 BC010540	97	+	BC010872 TSC_hg19_v1_chr11_+_64863712 BC007198 BC017438	106	+	NM_001242631|LOC100130348|100130348|uncharacterized LOC100130348##AK124141|LOC399904|399904|uncharacterized LOC399904##BC012530|ZFPL1|7542|zinc finger protein-like 1##BC012814|ZFPL1|7542|zinc finger protein-like 1##AF043611|ZFPL1|7542|zinc finger protein-like 1##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1##AF024631|C11orf2|738|chromosome 11 open reading frame 2##NM_013265|C11orf2|738|chromosome 11 open reading frame 2##BC010540|C11orf2|738|chromosome 11 open reading frame 2##BC010872|C11orf2|738|chromosome 11 open reading frame 2##BC007198|C11orf2|738|chromosome 11 open reading frame 2##BC017438|C11orf2|738|chromosome 11 open reading frame 2	0.0	0.0	
chr6	38644656	38644785	reg1004175.p2	7.298	+	NM_001099272 NM_052893	-36797	-	TSC_hg19_v1_chr6_-_38607697 BX537534	-37054	-	AB067467 TSC_hg19_v1_chr6_-_38607611	-37115	-	BT019987 BT019988 CU674854 S83285 TSC_hg19_v1_chr6_-_38670850 AB209801 AK130312	26120	-	TSC_hg19_v1_chr6_-_38670880 BC015934	26155	-	TSC_hg19_v1_chr6_-_38670886 AK129573 L07837 BC001741 AL833442	26172	-	NM_001099272|BTBD9|114781|BTB (POZ) domain containing 9##NM_052893|BTBD9|114781|BTB (POZ) domain containing 9##BX537534|BTBD9|114781|BTB (POZ) domain containing 9##AB067467|BTBD9|114781|BTB (POZ) domain containing 9##BT019987|GLO1|2739|glyoxalase I##BT019988|GLO1|2739|glyoxalase I##S83285|GLO1|2739|glyoxalase I##AB209801|GLO1|2739|glyoxalase I##AK130312|GLO1|2739|glyoxalase I##BC015934|GLO1|2739|glyoxalase I##AK129573|GLO1|2739|glyoxalase I##L07837|GLO1|2739|glyoxalase I##BC001741|GLO1|2739|glyoxalase I##AL833442|GLO1|2739|glyoxalase I	0.0	0.0	
chr16	53983836	53984016	reg1002118.p1	7.297	+	TSC_hg19_v1_chr16_+_53738067 AK096554 AB051539 AK295196	-245858	+	NM_001080432	-246052	+	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	-246169	-	BC034328 TSC_hg19_v1_chr16_-_54319025	335038	-	TSC_hg19_v1_chr16_+_54319531 AK309303	335595	+	DQ892008 EU176666 TSC_hg19_v1_chr16_-_54320043	336080	-	AK096554|FTO|79068|fat mass and obesity associated##AB051539|FTO|79068|fat mass and obesity associated##AK295196|FTO|79068|fat mass and obesity associated##NM_001080432|FTO|79068|fat mass and obesity associated##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##BC034328|IRX3|79191|iroquois homeobox 3##DQ892008|IRX3|79191|iroquois homeobox 3##EU176666|IRX3|79191|iroquois homeobox 3	1.014634	0.0	denovo_WM_7:64:0.829
chr20	49433213	49433355	reg1004765.p3	7.297	+	AF361220 NM_001010974 NM_017843 NM_198799 TSC_hg19_v1_chr20_+_49411542 AK000502 BC038381 BC047337 AJ511266 BC056883	-21766	+	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	-85215	+	TSC_hg19_v1_chr20_-_49308074 AK124347	-125207	-	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	114439	-	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	141779	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	142084	+	AF361220|BCAS4|55653|breast carcinoma amplified sequence 4##NM_001010974|BCAS4|55653|breast carcinoma amplified sequence 4##NM_017843|BCAS4|55653|breast carcinoma amplified sequence 4##NM_198799|BCAS4|55653|breast carcinoma amplified sequence 4##AK000502|BCAS4|55653|breast carcinoma amplified sequence 4##BC038381|BCAS4|55653|breast carcinoma amplified sequence 4##BC047337|BCAS4|55653|breast carcinoma amplified sequence 4##AJ511266|BCAS4|55653|breast carcinoma amplified sequence 4##BC056883|BCAS4|55653|breast carcinoma amplified sequence 4##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3	2.4257	0.0	denovo_WM_7:52:0.651	denovo_WM_7:53:0.326	denovo_WM_7:67:0.332	denovo_WM_7:68:0.657	denovo_WM_7:-80:0.437
chr21	38739026	38739164	reg1003884.p1	7.297	+	TSC_hg19_v1_chr21_-_38640233 BX648191 BC110655	-98860	-	TSC_hg19_v1_chr21_-_38639642 AJ001867 AK300024 AK312707 D87343 NM_006052 AK303624	-99267	-	TSC_hg19_v1_chr21_-_38639617 AK316460 AK299662	-99487	-	TSC_hg19_v1_chr21_+_38739208 AB015282	151	+	AF108830 NM_101395 AB015283 AB015284	775	+	D86550 NM_130436	52111	+	BX648191|DSCR3|10311|Down syndrome critical region gene 3##BC110655|DSCR3|10311|Down syndrome critical region gene 3##AJ001867|DSCR3|10311|Down syndrome critical region gene 3##AK300024|DSCR3|10311|Down syndrome critical region gene 3##AK312707|DSCR3|10311|Down syndrome critical region gene 3##D87343|DSCR3|10311|Down syndrome critical region gene 3##NM_006052|DSCR3|10311|Down syndrome critical region gene 3##AK303624|DSCR3|10311|Down syndrome critical region gene 3##AK316460|DSCR3|10311|Down syndrome critical region gene 3##AK299662|DSCR3|10311|Down syndrome critical region gene 3##AB015282|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AF108830|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_101395|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015283|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015284|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D86550|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_130436|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	0.0	0.0	
chrX	19874980	19875160	reg1004344.p3	7.297	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-57158	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-57195	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-186014	-	TSC_hg19_v1_chrX_-_19905450 AY542305	30393	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	30562	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	30634	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.987299	0.0	denovo_WM_7:7:0.265	denovo_WM_7:8:0.221	denovo_WM_7:26:0.231	denovo_WM_7:27:0.275
chr17	57232666	57232813	reg1004409.p2	7.296	+	BC106003 AK022820 TSC_hg19_v1_chr17_-_57232539 AK056473 FJ648812 BC017873	-193	-	TSC_hg19_v1_chr17_-_57184207 AK294850 NM_001005207 NM_015294	-48518	-	TSC_hg19_v1_chr17_-_57184116 AK292459	-48600	-	NM_001100595 NM_182620	60	-	NM_018304	120	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	381	+	BC106003|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK022820|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK056473|SKA2|348235|spindle and kinetochore associated complex subunit 2##FJ648812|SKA2|348235|spindle and kinetochore associated complex subunit 2##BC017873|SKA2|348235|spindle and kinetochore associated complex subunit 2##AK294850|TRIM37|4591|tripartite motif containing 37##NM_001005207|TRIM37|4591|tripartite motif containing 37##NM_015294|TRIM37|4591|tripartite motif containing 37##AK292459|TRIM37|4591|tripartite motif containing 37##NM_001100595|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_182620|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_018304|PRR11|55771|proline rich 11##AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11	0.0	0.0	
chr3	98259310	98259445	reg1003607.p1	7.295	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-8568	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-17511	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-17612	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	53042	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	191868	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	192210	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.0	0.0	
chr1	101823125	101823282	reg1002441.p1	7.294	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-120633	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-120822	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-331770	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	639284	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	639587	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1673580	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	0.999304	0.823612	denovo_WM_7:56:0.288	denovo_WM_7:57:0.577	CTCF.p2:-79:0.807
chr22	30838547	30838692	reg1005413.p1	7.294	+	NM_001003704 NM_016498 AF151076 AF060924 BC030989 AK026104 BC009300 TSC_hg19_v1_chr22_+_30821776 BC001608 BC014446 CR456345 BC046132 AB528187 CU013056 CU013344	-16880	+	NM_001204204 NM_012429 NM_033382 AL096881 TSC_hg19_v1_chr22_+_30793006 AK223587 BC048337 AK314390 AK091402 BC058915 AB033012 CR456571 AK303751 AK296540 CU013170 CU013458	-45604	+	NM_001017981 AB464176	-55317	-	AY158086 BC069641 BC101001 BC101002 BC101003 BC101004 AK298079 AK131358 AY240872 NM_174975	29369	-	AY158085 FJ824055 BC139912 BC136358 BC136359 AK093448 AK092002 AK093418 AX747303 AX748114 NM_001161368 NM_174977	63028	-	NM_001193336	104049	-	NM_001003704|MTFP1|51537|mitochondrial fission process 1##NM_016498|MTFP1|51537|mitochondrial fission process 1##AF151076|MTFP1|51537|mitochondrial fission process 1##AF060924|MTFP1|51537|mitochondrial fission process 1##BC030989|MTFP1|51537|mitochondrial fission process 1##AK026104|MTFP1|51537|mitochondrial fission process 1##BC009300|MTFP1|51537|mitochondrial fission process 1##BC001608|MTFP1|51537|mitochondrial fission process 1##BC014446|MTFP1|51537|mitochondrial fission process 1##CR456345|MTFP1|51537|mitochondrial fission process 1##BC046132|MTFP1|51537|mitochondrial fission process 1##NM_001204204|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##NM_012429|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##NM_033382|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AL096881|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK223587|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##BC048337|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK314390|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK091402|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##BC058915|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AB033012|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##CR456571|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK303751|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##AK296540|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##CU013170|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##CU013458|SEC14L2|23541|SEC14-like 2 (S. cerevisiae)##NM_001017981|RNF215|200312|ring finger protein 215##AY158086|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC069641|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101001|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101002|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101003|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##BC101004|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AK298079|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AK131358|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AY240872|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##NM_174975|SEC14L3|266629|SEC14-like 3 (S. cerevisiae)##AY158085|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##FJ824055|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##BC139912|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##BC136358|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##BC136359|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##AK093448|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##AK092002|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##AK093418|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##NM_001161368|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##NM_174977|SEC14L4|284904|SEC14-like 4 (S. cerevisiae)##NM_001193336|SEC14L6|730005|SEC14-like 6 (S. cerevisiae)	1.00996	0.0	denovo_WM_7:58:0.227	denovo_WM_7:61:0.358	denovo_WM_7:62:0.232
chr6	21159262	21159406	reg1003732.p1	7.294	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-624611	+	CR749285 NM_001243076	-755301	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-757231	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	435038	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	507325	+	BC015850 NM_000948	1138395	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.996952	0.0	denovo_WM_7:6:0.424	denovo_WM_7:7:0.424
chr22	18479655	18479835	reg1004585.p2	7.293	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-222411	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-222522	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-222538	-	TSC_hg19_v1_chr22_-_18484268 AK127487	4483	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	27516	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	80943	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.99579	0.0	
chr22	43064698	43064836	reg1004062.p1	7.293	+	TSC_hg19_v1_chr22_-_43045399 NM_000398	-19364	-	TSC_hg19_v1_chr22_-_43045347 AJ010116 AJ010117 AJ010118 BT009821 AB463000 CU012995 CU013283 CR456435 AF361370 Y09501 BC004821	-19435	-	TSC_hg19_v1_chr22_-_43042979 NM_001129819 NM_001171661 NM_007326	-21782	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	25140	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	52088	-	TSC_hg19_v1_chr22_-_43117270 AK312927	52510	-	NM_000398|CYB5R3|1727|cytochrome b5 reductase 3##AJ010116|CYB5R3|1727|cytochrome b5 reductase 3##AJ010117|CYB5R3|1727|cytochrome b5 reductase 3##AJ010118|CYB5R3|1727|cytochrome b5 reductase 3##BT009821|CYB5R3|1727|cytochrome b5 reductase 3##CU012995|CYB5R3|1727|cytochrome b5 reductase 3##CU013283|CYB5R3|1727|cytochrome b5 reductase 3##CR456435|CYB5R3|1727|cytochrome b5 reductase 3##AF361370|CYB5R3|1727|cytochrome b5 reductase 3##Y09501|CYB5R3|1727|cytochrome b5 reductase 3##BC004821|CYB5R3|1727|cytochrome b5 reductase 3##NM_001129819|CYB5R3|1727|cytochrome b5 reductase 3##NM_001171661|CYB5R3|1727|cytochrome b5 reductase 3##NM_007326|CYB5R3|1727|cytochrome b5 reductase 3##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase	0.993959	0.0	denovo_WM_7:-5:0.227	denovo_WM_7:-6:0.224	denovo_WM_7:-7:0.420
chr7	138789834	138790014	reg1005445.p2	7.293	+	TSC_hg19_v1_chr7_-_138720787 BC008842 NM_080660 BC020784	-69090	-	TSC_hg19_v1_chr7_-_138666114 AM989468 AM989469 AM989472 AM989473 AM989474 NM_001164665 NM_020910	-123691	-	BC109304 BC109305 AF245517 AK292945 NM_020632 NM_130840	-307030	-	AK055851 BX647974 TSC_hg19_v1_chr7_-_138794101	4177	-	TSC_hg19_v1_chr7_-_138794133 AK292811	4249	-	BC025308 BC033105 BC040956 NM_020119 NM_024625 BX571742 TSC_hg19_v1_chr7_-_138794467	4506	-	BC008842|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##NM_080660|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##BC020784|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##AM989468|KIAA1549|57670|KIAA1549##AM989469|KIAA1549|57670|KIAA1549##NM_001164665|KIAA1549|57670|KIAA1549##NM_020910|KIAA1549|57670|KIAA1549##BC109304|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##BC109305|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AF245517|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK292945|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_020632|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_130840|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK055851|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX647974|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##AK292811|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC025308|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC033105|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC040956|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_020119|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_024625|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX571742|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1	0.992046	0.0	denovo_WM_7:43:0.808
chr5	159846174	159846295	reg1000400.p1	7.292	+	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	-129	-	BC032603 TSC_hg19_v1_chr5_-_159827053 NM_022090	-19151	-	TSC_hg19_v1_chr5_-_159797619 BC054506 BC011699 AF329836 AB590457 AY358839 NM_031908	-48602	-	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	2620	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	2669	+	AK025130 TSC_hg19_v1_chr5_-_160112393	266105	-	AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC032603|C5orf54|63920|chromosome 5 open reading frame 54##NM_022090|C5orf54|63920|chromosome 5 open reading frame 54##BC054506|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC011699|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AF329836|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AY358839|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##NM_031908|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK025130|ATP10B|23120|ATPase, class V, type 10B	0.0	0.0	
chr9	15426137	15426260	reg1005281.p2	7.292	+	TSC_hg19_v1_chr9_+_15422877 AB527501 EU446705 BC014985	-3286	+	TSC_hg19_v1_chr9_+_15422873 BC121011 BC121012 U66413 BC108743 U71300 AK293310	-3330	+	TSC_hg19_v1_chr9_+_15422741 BC036031 NM_001039697	-3490	+	AF098483 AF098482 NM_021144	84049	-	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	84762	-	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	126823	+	EU446705|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC014985|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC121011|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC121012|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##U66413|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC108743|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##U71300|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##AK293310|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC036031|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##NM_001039697|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93	0.0	0.0	
chr12	16352180	16352314	reg1003437.p1	7.290	+	TSC_hg19_v1_chr12_+_16064282 AK024614 AK222541 AK296697	-287956	+	TSC_hg19_v1_chr12_+_16064265 BC056234	-287991	+	BC041328 NM_015954 TSC_hg19_v1_chr12_+_16064223	-288081	+	NM_001170798	78371	-	NM_145792	147828	+	TSC_hg19_v1_chr12_+_16500585 BC062473 NM_020300 AK291148 AK309707 BC005923 BC056863 NM_145791	148372	+	AK024614|DERA|51071|deoxyribose-phosphate aldolase (putative)##AK222541|DERA|51071|deoxyribose-phosphate aldolase (putative)##AK296697|DERA|51071|deoxyribose-phosphate aldolase (putative)##BC056234|DERA|51071|deoxyribose-phosphate aldolase (putative)##BC041328|DERA|51071|deoxyribose-phosphate aldolase (putative)##NM_015954|DERA|51071|deoxyribose-phosphate aldolase (putative)##NM_001170798|SLC15A5|729025|solute carrier family 15, member 5##NM_145792|MGST1|4257|microsomal glutathione S-transferase 1##NM_020300|MGST1|4257|microsomal glutathione S-transferase 1##AK291148|MGST1|4257|microsomal glutathione S-transferase 1##AK309707|MGST1|4257|microsomal glutathione S-transferase 1##BC005923|MGST1|4257|microsomal glutathione S-transferase 1##BC056863|MGST1|4257|microsomal glutathione S-transferase 1##NM_145791|MGST1|4257|microsomal glutathione S-transferase 1	0.998667	0.0	
chr1	94057021	94057149	reg1005330.p1	7.290	+	TSC_hg19_v1_chr1_+_93913680 NM_001024948 NM_001164473 NM_017737 AY514449	-143363	+	BC002809 TSC_hg19_v1_chr1_+_93811500	-245585	+	TSC_hg19_v1_chr1_+_93811491 AK057541 AL833729	-245592	+	TSC_hg19_v1_chr1_+_94057524 AK307291	455	+	TSC_hg19_v1_chr1_+_94057602 BC084562	522	+	U92715 TSC_hg19_v1_chr1_-_94147394 BC039895 AF124250 NM_003567	90242	-	NM_001024948|FNBP1L|54874|formin binding protein 1-like##NM_001164473|FNBP1L|54874|formin binding protein 1-like##NM_017737|FNBP1L|54874|formin binding protein 1-like##AY514449|FNBP1L|54874|formin binding protein 1-like##BC002809|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##AK057541|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##AL833729|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##AK307291|LOC100129046|100129046|uncharacterized LOC100129046##BC084562|LOC100129046|100129046|uncharacterized LOC100129046##U92715|BCAR3|8412|breast cancer anti-estrogen resistance 3##BC039895|BCAR3|8412|breast cancer anti-estrogen resistance 3##AF124250|BCAR3|8412|breast cancer anti-estrogen resistance 3##NM_003567|BCAR3|8412|breast cancer anti-estrogen resistance 3	0.993097	0.0	denovo_WM_7:-44:0.590	denovo_WM_7:-45:0.203
chr12	10446264	10446403	reg1005181.p1	7.289	+	AF287012 TSC_hg19_v1_chr12_+_10365506 AF087847 AK303581 AK315418 AK074195 BC028315 NM_031412 BC009309 AL136676 BX648781 BC008891	-80857	+	NM_153022 AY358845 AK055728	-114740	+	AB102861 AB590414 CU692540 DQ891409 DQ894585 AF035776 AK292124 AK295409 AK298040 BC022295 BC055085 AB010710 AK308009 NM_001172632 NM_001172633 NM_002543	-121601	-	AK291506 AY227806 NM_001114396	10713	+	NM_002262 NM_007334 AF498040 AF498041 AY327501 U30610 BC028009 AB009597 AJ000001	14199	+	BC039836 AK226161 AK292059 NM_007360	96301	-	AF287012|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AF087847|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK303581|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK315418|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK074195|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC028315|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_031412|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC009309|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AL136676|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BX648781|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC008891|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_153022|C12orf59|120939|chromosome 12 open reading frame 59##AY358845|C12orf59|120939|chromosome 12 open reading frame 59##AK055728|C12orf59|120939|chromosome 12 open reading frame 59##AB102861|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##DQ891409|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##DQ894585|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AF035776|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK292124|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK295409|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK298040|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##BC022295|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##BC055085|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AB010710|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK308009|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_001172632|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_001172633|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_002543|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK291506|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY227806|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_001114396|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_002262|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_007334|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498040|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498041|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY327501|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##U30610|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC028009|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AB009597|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AJ000001|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC039836|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK226161|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292059|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##NM_007360|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1	0.0	0.0	
chr5	95996875	95997053	reg1002648.p1	7.288	+	AB208874 AB590528 BC130295 BC136486 TSC_hg19_v1_chr5_-_95768927 X64810 M90753 BC031211 NM_000439	-228142	-	AK303888 NM_001177875	-229102	-	AK308575 NM_001177876	-248276	-	TSC_hg19_v1_chr5_+_95997755 NM_001190442 AB208816	787	+	TSC_hg19_v1_chr5_+_95997965 BC016066 NM_001042440	964	+	BC013579 TSC_hg19_v1_chr5_+_95998220	1231	+	AB208874|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##BC130295|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##BC136486|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##X64810|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##M90753|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##BC031211|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_000439|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##AK303888|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177875|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001190442|CAST|831|calpastatin##AB208816|CAST|831|calpastatin##BC016066|CAST|831|calpastatin##NM_001042440|CAST|831|calpastatin##BC013579|CAST|831|calpastatin	0.999916	0.0	
chr11	44634046	44634148	reg1003813.p2	7.287	+	TSC_hg19_v1_chr11_+_44587214 AK225410 AK312677 S48196 U20770 X53795 BC000726 BC001821	-46870	+	NM_001024844 NM_002231 TSC_hg19_v1_chr11_+_44587187 AK225708	-46932	+	AB385504 AB058691 AJ404888 AF294629 NM_021926 AK092346	-302421	-	NM_130783	151878	+	TSC_hg19_v1_chr11_-_44956087 AF010315	322010	-	TSC_hg19_v1_chr11_-_44972435 AK292837 AK096176 AK056379 AK026607 AK054815 NM_001076787 NM_006034	338320	-	AK225410|CD82|3732|CD82 molecule##AK312677|CD82|3732|CD82 molecule##S48196|CD82|3732|CD82 molecule##U20770|CD82|3732|CD82 molecule##BC000726|CD82|3732|CD82 molecule##BC001821|CD82|3732|CD82 molecule##NM_001024844|CD82|3732|CD82 molecule##NM_002231|CD82|3732|CD82 molecule##AK225708|CD82|3732|CD82 molecule##AB058691|ALX4|60529|ALX homeobox 4##AJ404888|ALX4|60529|ALX homeobox 4##AF294629|ALX4|60529|ALX homeobox 4##NM_021926|ALX4|60529|ALX homeobox 4##AK092346|ALX4|60529|ALX homeobox 4##NM_130783|TSPAN18|90139|tetraspanin 18##AF010315|TP53I11|9537|tumor protein p53 inducible protein 11##AK292837|TP53I11|9537|tumor protein p53 inducible protein 11##AK096176|TP53I11|9537|tumor protein p53 inducible protein 11##AK056379|TP53I11|9537|tumor protein p53 inducible protein 11##AK026607|TP53I11|9537|tumor protein p53 inducible protein 11##AK054815|TP53I11|9537|tumor protein p53 inducible protein 11##NM_001076787|TP53I11|9537|tumor protein p53 inducible protein 11##NM_006034|TP53I11|9537|tumor protein p53 inducible protein 11	2.220492	0.0	denovo_WM_7:-1:0.298	denovo_WM_7:-2:0.298	denovo_WM_7:-3:0.298
chr1	85186276	85186456	reg1004345.p2	7.287	+	AY367055 TSC_hg19_v1_chr1_-_85156128 AK316472 AK307336 BC064389 BC033637 AK294057 AK292475 NM_001166295 NM_001166417 AL133046 AB023140 NM_001166293 NM_001166294 NM_014021	-30290	-	TSC_hg19_v1_chr1_-_85040102 CU692842 M95767 AK075423 BC065191 AK298703 AK314640 BC126333 BC126335 BC024007 BC096752 NM_004388	-146260	-	TSC_hg19_v1_chr1_-_84972262 NM_005274	-214097	-	TSC_hg19_v1_chr1_-_85358890 AK308283 NM_012152	172520	-	BC104891 BC104893 TSC_hg19_v1_chr1_-_85462793 AK094010 AK309858 AX748410 NM_153259	276342	-	AF475085 AK001868 BC060765 TSC_hg19_v1_chr1_-_85514153 AK292206	327779	-	AY367055|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK316472|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK307336|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC064389|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC033637|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK294057|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK292475|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166295|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166417|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AL133046|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AB023140|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166293|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166294|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_014021|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##M95767|CTBS|1486|chitobiase, di-N-acetyl-##AK075423|CTBS|1486|chitobiase, di-N-acetyl-##BC065191|CTBS|1486|chitobiase, di-N-acetyl-##AK298703|CTBS|1486|chitobiase, di-N-acetyl-##AK314640|CTBS|1486|chitobiase, di-N-acetyl-##BC126333|CTBS|1486|chitobiase, di-N-acetyl-##BC126335|CTBS|1486|chitobiase, di-N-acetyl-##BC024007|CTBS|1486|chitobiase, di-N-acetyl-##BC096752|CTBS|1486|chitobiase, di-N-acetyl-##NM_004388|CTBS|1486|chitobiase, di-N-acetyl-##NM_005274|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##AK308283|LPAR3|23566|lysophosphatidic acid receptor 3##NM_012152|LPAR3|23566|lysophosphatidic acid receptor 3##BC104891|MCOLN2|255231|mucolipin 2##BC104893|MCOLN2|255231|mucolipin 2##AK094010|MCOLN2|255231|mucolipin 2##AK309858|MCOLN2|255231|mucolipin 2##NM_153259|MCOLN2|255231|mucolipin 2##AF475085|MCOLN3|55283|mucolipin 3##AK001868|MCOLN3|55283|mucolipin 3##BC060765|MCOLN3|55283|mucolipin 3##AK292206|MCOLN3|55283|mucolipin 3	0.0	0.0	
chr7	76959686	76959866	reg1000675.p1	7.287	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-130640	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-207830	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-703229	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	85942	-	TSC_hg19_v1_chr7_+_77166392 BC050008	206602	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	207030	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.0	0.225973	CTCF.p2:40:0.226
chr9	2158245	2158393	reg1004566.p1	7.286	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-143023	+	AF130729 NM_181872	-1107710	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-1107949	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	463488	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	463755	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	463793	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chrX	22821609	22821789	reg1005246.p2	7.285	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	-530631	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	-770674	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-862873	+	AY039237 NM_182699 BC067878 BC051703	196385	+	AK298796 NM_173495 AK054858 BC121061	531361	+	TSC_hg19_v1_chrX_+_23685615 BC016770	863924	+	GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##AK298796|PTCHD1|139411|patched domain containing 1##NM_173495|PTCHD1|139411|patched domain containing 1##AK054858|PTCHD1|139411|patched domain containing 1##BC121061|PTCHD1|139411|patched domain containing 1##BC016770|PRDX4|10549|peroxiredoxin 4	0.991597	0.0	denovo_WM_7:-39:0.244	denovo_WM_7:-40:0.244	denovo_WM_7:-41:0.244	denovo_WM_7:-42:0.244
chr11	72759062	72759235	reg1004691.p2	7.284	+	BC142718 BC146660 TSC_hg19_v1_chr11_+_72525476 AK303270 AK091151 AX746810 AK093017 AX747859 BC108672	-233666	+	BC137489 BC137490 TSC_hg19_v1_chr11_+_72525455 BC069189 NM_033388 AK090597 AX746524	-233743	+	AB209473 AK095668 BC035482 BC007919 BC014033 AK310301 AK315255 NM_006645	-254452	-	AK296376 TSC_hg19_v1_chr11_-_72853112 AK297928 AB018312 NM_014824	93901	-	TSC_hg19_v1_chr11_+_72929328 BC012104 NM_002564 NM_176072	170196	+	TSC_hg19_v1_chr11_+_72929414 U07225 BC028135 NM_176071	170298	+	BC142718|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC146660|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK303270|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK091151|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK093017|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC108672|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137489|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137490|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC069189|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##NM_033388|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK090597|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK095668|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC035482|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC007919|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC014033|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##AK315255|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##NM_006645|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##AK296376|FCHSD2|9873|FCH and double SH3 domains 2##AK297928|FCHSD2|9873|FCH and double SH3 domains 2##AB018312|FCHSD2|9873|FCH and double SH3 domains 2##NM_014824|FCHSD2|9873|FCH and double SH3 domains 2##BC012104|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_002564|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_176072|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##U07225|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##BC028135|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_176071|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2	0.695253	0.0	denovo_WM_7:-24:0.511
chr2	79204851	79204998	reg1005150.p1	7.284	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	-1455506	-	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-3266873	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-3267205	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	47914	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	110209	-	AK307292 NM_002909 TSC_hg19_v1_chr2_+_79347583	142612	+	BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta##AK307292|REG1A|5967|regenerating islet-derived 1 alpha##NM_002909|REG1A|5967|regenerating islet-derived 1 alpha	0.0	0.0	
chr3	28282732	28282901	reg1004768.p1	7.284	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-518615	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-519023	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-756886	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	282	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	107566	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	107745	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.30286	0.0	denovo_WM_7:-19:0.244
chr4	57410689	57410869	reg1005335.p1	7.284	+	AY439003 NM_206919	-39405	+	TSC_hg19_v1_chr4_+_57333798 BC040134 BX537991 AF038851 BC046143 BC065018 AF069765 BC032609 AK225430 AK307397 AB590681 AF077019	-76989	+	TSC_hg19_v1_chr4_+_57333762 NM_006947 BC017057 BC056901 BC105583	-77018	+	AB019573 AB463756 AM393649 DQ892193 EU176669 TSC_hg19_v1_chr4_-_57522247	111378	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	111799	-	AF492675 NM_001145460 NM_032495 NM_139212	137079	-	AY439003|ARL9|132946|ADP-ribosylation factor-like 9##NM_206919|ARL9|132946|ADP-ribosylation factor-like 9##BC040134|SRP72|6731|signal recognition particle 72kDa##BX537991|SRP72|6731|signal recognition particle 72kDa##AF038851|SRP72|6731|signal recognition particle 72kDa##BC046143|SRP72|6731|signal recognition particle 72kDa##BC065018|SRP72|6731|signal recognition particle 72kDa##AF069765|SRP72|6731|signal recognition particle 72kDa##BC032609|SRP72|6731|signal recognition particle 72kDa##AK225430|SRP72|6731|signal recognition particle 72kDa##AK307397|SRP72|6731|signal recognition particle 72kDa##AF077019|SRP72|6731|signal recognition particle 72kDa##NM_006947|SRP72|6731|signal recognition particle 72kDa##BC017057|SRP72|6731|signal recognition particle 72kDa##BC056901|SRP72|6731|signal recognition particle 72kDa##BC105583|SRP72|6731|signal recognition particle 72kDa##AB019573|HOPX|84525|HOP homeobox##AM393649|HOPX|84525|HOP homeobox##DQ892193|HOPX|84525|HOP homeobox##EU176669|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox	0.018715	0.9908	CTCF.p2:102:0.991
chr6	26222980	26223092	reg1004671.p1	7.284	+	TSC_hg19_v1_chr6_+_26217147 NM_021052 AK311824 BC093836 BC093862 EU446964	-5865	+	AB590708 NM_003518 BC001131 BC082232 AK311935	-6141	-	AK312153 TSC_hg19_v1_chr6_+_26204837 BC012587 BC050615 BC056868 AB463741 EU446978 CR542180 CR542189 NM_003545	-18211	+	AB591036 CR542014 EU446973 NM_003532	2346	+	EU446961 TSC_hg19_v1_chr6_-_26235219 AK312845 NM_005320 BC104874 BC111971	12164	-	BC093763 BC093765 TSC_hg19_v1_chr6_+_26240620 BC069288 NM_003540	17570	+	NM_021052|HIST1H2AE|3012|histone cluster 1, H2ae##BC093836|HIST1H2AE|3012|histone cluster 1, H2ae##BC093862|HIST1H2AE|3012|histone cluster 1, H2ae##EU446964|HIST1H2AE|3012|histone cluster 1, H2ae##NM_003518|HIST1H2BG|8339|histone cluster 1, H2bg##BC001131|NCALD|83988|neurocalcin delta##BC082232|HIST1H2BG|8339|histone cluster 1, H2bg##AK311935|HIST1H2BG|8339|histone cluster 1, H2bg##BC012587|HIST1H4E|8367|histone cluster 1, H4e##BC050615|HIST1H4E|8367|histone cluster 1, H4e##BC056868|HIST1H4E|8367|histone cluster 1, H4e##EU446978|HIST1H4E|8367|histone cluster 1, H4e##CR542180|HIST1H4E|8367|histone cluster 1, H4e##CR542189|HIST1H4E|8367|histone cluster 1, H4e##NM_003545|HIST1H4E|8367|histone cluster 1, H4e##CR542014|HIST1H3E|8353|histone cluster 1, H3e##EU446973|HIST1H3E|8353|histone cluster 1, H3e##NM_003532|HIST1H3E|8353|histone cluster 1, H3e##EU446961|HIST1H1D|3007|histone cluster 1, H1d##AK312845|HIST1H1D|3007|histone cluster 1, H1d##NM_005320|HIST1H1D|3007|histone cluster 1, H1d##BC104874|HIST1H1D|3007|histone cluster 1, H1d##BC111971|HIST1H1D|3007|histone cluster 1, H1d##BC093763|HIST1H4F|8361|histone cluster 1, H4f##BC093765|HIST1H4F|8361|histone cluster 1, H4f##BC069288|HIST1H4F|8361|histone cluster 1, H4f##NM_003540|HIST1H4F|8361|histone cluster 1, H4f	0.997775	0.0	denovo_WM_7:16:0.998
chr7	23584041	23584155	reg1005092.p1	7.284	+	CU677835 DQ892442 DQ895653 AB528532 TSC_hg19_v1_chr7_-_23571604 BC069011 BC017094 U53209 AB097048 AK300565 AK311687 AK314801 AK300741 AK310719 AK298815 NM_013293	-12534	-	TSC_hg19_v1_chr7_+_23530136 BC026177	-53931	+	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	-74100	-	TSC_hg19_v1_chr7_+_23637005 NM_138771 AK289911 AY358713 AX721042	52917	+	TSC_hg19_v1_chr7_+_23719821 NM_001127364 NM_001127365 NM_199136 BC042034 AK127774 AL832127 BC026000 BC063130 CU687660	135725	+	AK057271 NM_001122833 NM_031414 BC047506 BC059374 BC033018 AF285599 AK292474 AK302689 AF332194 NM_032944	165818	+	DQ892442|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##DQ895653|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC069011|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC017094|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##U53209|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AB097048|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300565|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK311687|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK314801|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300741|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK310719|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK298815|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_013293|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_138771|CCDC126|90693|coiled-coil domain containing 126##AK289911|CCDC126|90693|coiled-coil domain containing 126##AY358713|CCDC126|90693|coiled-coil domain containing 126##NM_001127364|C7orf46|340277|chromosome 7 open reading frame 46##NM_001127365|C7orf46|340277|chromosome 7 open reading frame 46##NM_199136|C7orf46|340277|chromosome 7 open reading frame 46##BC042034|C7orf46|340277|chromosome 7 open reading frame 46##AK127774|C7orf46|340277|chromosome 7 open reading frame 46##AL832127|C7orf46|340277|chromosome 7 open reading frame 46##BC026000|C7orf46|340277|chromosome 7 open reading frame 46##BC063130|C7orf46|340277|chromosome 7 open reading frame 46##AK057271|STK31|56164|serine/threonine kinase 31##NM_001122833|STK31|56164|serine/threonine kinase 31##NM_031414|STK31|56164|serine/threonine kinase 31##BC047506|STK31|56164|serine/threonine kinase 31##BC059374|STK31|56164|serine/threonine kinase 31##BC033018|STK31|56164|serine/threonine kinase 31##AF285599|STK31|56164|serine/threonine kinase 31##AK292474|STK31|56164|serine/threonine kinase 31##AK302689|STK31|56164|serine/threonine kinase 31##AF332194|STK31|56164|serine/threonine kinase 31##NM_032944|STK31|56164|serine/threonine kinase 31	0.995756	0.0	denovo_WM_7:-27:0.983
chr15	96777969	96778097	reg1004464.p1	7.283	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-907714	-	NM_001159644 BC025708 BC111024 AK002037	-1878724	+	NM_001159643 NM_018349 AY656717 BC131527	-1936572	+	BC106083 NM_001145155 FM208183	91128	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	95944	+	AK316086 NM_001145156	97760	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.989403	0.0	denovo_WM_7:47:0.620
chr4	26863277	26863432	reg1003334.p2	7.281	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-814	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-277674	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-371369	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3858645	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3858840	+	TSC_hg19_v1_chr4_+_30722465 AB006756	3859105	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.99688	0.0	
chr9	6655201	6655328	reg1005599.p2	7.281	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-9637	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-241859	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-242067	+	AK310439 NM_001146696	65598	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	102403	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	102775	+	BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C	0.968063	0.0	denovo_WM_7:27:0.323	denovo_WM_7:28:0.323	denovo_WM_7:29:0.323
chr19	36699049	36699187	reg1004313.p2	7.280	+	BC002757 NM_001864	-55348	-	TSC_hg19_v1_chr19_+_36631899 CU680106 BT009775	-66933	+	TSC_hg19_v1_chr19_+_36631021 BC000592 BC011903 BC064998 BC017308 AY007141 BC023643 BC021933	-68085	+	BC068453 NM_152477 AK308212	6443	-	NM_001099638 NM_001099639 NM_007145 TSC_hg19_v1_chr19_+_36705624	6456	+	AK094310 NM_001042474	6865	-	BC002757|COX7A1|1346|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)##NM_001864|COX7A1|1346|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)##BT009775|CAPNS1|826|calpain, small subunit 1##BC000592|CAPNS1|826|calpain, small subunit 1##BC011903|CAPNS1|826|calpain, small subunit 1##BC064998|CAPNS1|826|calpain, small subunit 1##BC017308|CAPNS1|826|calpain, small subunit 1##AY007141|CAPNS1|826|calpain, small subunit 1##BC023643|CAPNS1|826|calpain, small subunit 1##BC021933|CAPNS1|826|calpain, small subunit 1##BC068453|ZNF565|147929|zinc finger protein 565##NM_152477|ZNF565|147929|zinc finger protein 565##AK308212|ZNF565|147929|zinc finger protein 565##NM_001099638|ZNF146|7705|zinc finger protein 146##NM_001099639|ZNF146|7705|zinc finger protein 146##NM_007145|ZNF146|7705|zinc finger protein 146##AK094310|ZNF565|147929|zinc finger protein 565##NM_001042474|ZNF565|147929|zinc finger protein 565	0.991854	0.0	denovo_WM_7:0:0.331	denovo_WM_7:-1:0.331	denovo_WM_7:-2:0.331
chr11	129797081	129797190	reg1004882.p1	7.276	+	TSC_hg19_v1_chr11_-_129765482 NM_001143835	-31654	-	TSC_hg19_v1_chr11_-_129765469 AK299794	-31665	-	TSC_hg19_v1_chr11_-_129765453 BC063280	-31693	-	AB033057 AB385439 BC117415 BC143612 BC143613 AF503171 AF275817 NM_199438 NM_199439	20273	-	AK310354 TSC_hg19_v1_chr11_-_129872691	75554	-	TSC_hg19_v1_chr11_-_129872731 BC112934 AL833172 BX648944 NM_020228 NM_199437	75599	-	NM_001143835|NFRKB|4798|nuclear factor related to kappaB binding protein##BC063280|NFRKB|4798|nuclear factor related to kappaB binding protein##AB033057|PRDM10|56980|PR domain containing 10##BC117415|PRDM10|56980|PR domain containing 10##BC143612|PRDM10|56980|PR domain containing 10##BC143613|PRDM10|56980|PR domain containing 10##AF503171|PRDM10|56980|PR domain containing 10##AF275817|PRDM10|56980|PR domain containing 10##NM_199438|PRDM10|56980|PR domain containing 10##NM_199439|PRDM10|56980|PR domain containing 10##AK310354|PRDM10|56980|PR domain containing 10##BC112934|PRDM10|56980|PR domain containing 10##AL833172|PRDM10|56980|PR domain containing 10##BX648944|PRDM10|56980|PR domain containing 10##NM_020228|PRDM10|56980|PR domain containing 10##NM_199437|PRDM10|56980|PR domain containing 10	1.996003	0.0	
chr15	41628772	41628935	reg1004614.p2	7.274	+	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	-3688	+	AK307728 AK222819 AK290879 AK293168 BC011008 AF217513 TSC_hg19_v1_chr15_+_41625080 AK225703 AL833611 AK023483 BC024772 AF090915 AF290612 BC001308 BC012887	-3772	+	NM_001243142 NM_001243143 NM_001243144 NM_016359 NM_018454	-3962	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	65809	-	TSC_hg19_v1_chr15_+_41709329 NM_015138 AK292302 D87440 BC015052 AB383821	80507	+	NM_002220 TSC_hg19_v1_chr15_+_41786071 BC026331 X54938 AB463780	157237	+	AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##AK307728|NUSAP1|51203|nucleolar and spindle associated protein 1##AK222819|NUSAP1|51203|nucleolar and spindle associated protein 1##AK290879|NUSAP1|51203|nucleolar and spindle associated protein 1##AK293168|NUSAP1|51203|nucleolar and spindle associated protein 1##BC011008|NUSAP1|51203|nucleolar and spindle associated protein 1##AF217513|NUSAP1|51203|nucleolar and spindle associated protein 1##AK225703|NUSAP1|51203|nucleolar and spindle associated protein 1##AL833611|NUSAP1|51203|nucleolar and spindle associated protein 1##AK023483|NUSAP1|51203|nucleolar and spindle associated protein 1##BC024772|NUSAP1|51203|nucleolar and spindle associated protein 1##AF090915|NUSAP1|51203|nucleolar and spindle associated protein 1##AF290612|NUSAP1|51203|nucleolar and spindle associated protein 1##BC001308|NUSAP1|51203|nucleolar and spindle associated protein 1##BC012887|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243142|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243143|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243144|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_016359|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_018454|NUSAP1|51203|nucleolar and spindle associated protein 1##AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_015138|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK292302|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##D87440|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC015052|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_002220|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC026331|ITPKA|3706|inositol-trisphosphate 3-kinase A##X54938|ITPKA|3706|inositol-trisphosphate 3-kinase A	0.997748	0.0	
chr20	47885251	47885392	reg1005329.p1	7.274	+	BC041630 TSC_hg19_v1_chr20_-_47874187	-11153	-	TSC_hg19_v1_chr20_+_47835964 BC009304 BC011927 BC016060 HQ258546	-49347	+	TSC_hg19_v1_chr20_+_47835954 AK022979	-49363	+	BC110888 BC014041 AB037825 AK002139 TSC_hg19_v1_chr20_-_47894585	9256	-	TSC_hg19_v1_chr20_-_47894629 BC030789 NM_021035	9352	-	TSC_hg19_v1_chr20_+_47895176 BC042807 CR936805	9851	+	BC041630|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC009304|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC011927|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC016060|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258546|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK022979|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC110888|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC014041|ZNFX1|57169|zinc finger, NFX1-type containing 1##AB037825|ZNFX1|57169|zinc finger, NFX1-type containing 1##AK002139|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC030789|ZNFX1|57169|zinc finger, NFX1-type containing 1##NM_021035|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC042807|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##CR936805|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)	0.118677	0.0	
chr3	17706490	17706643	reg1005412.p1	7.274	+	BC036392 NM_015184	-731985	+	AB029015 NM_001144382	-780115	+	U65918 U66726 U66078 BC027595 NM_001351	-1059600	-	AK310539 NM_001134381	34945	-	D86965 NM_014744	75832	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	77601	-	BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5	1.267753	0.0	
chr16	68154028	68154176	reg1003509.p1	7.273	+	TSC_hg19_v1_chr16_+_68119350 L41067	-34733	+	TSC_hg19_v1_chr16_+_68119335 AB209824	-34764	+	TSC_hg19_v1_chr16_+_68119279 NM_004555 NM_173163 NM_173165	-34848	+	CU688826 BC030146 BC052309 TSC_hg19_v1_chr16_-_68270026 AK025571 NM_024939	115939	-	AK300596 AK074828 NM_012320 TSC_hg19_v1_chr16_+_68279275 AK296263 AK298494 AL110209 BC062605 AK001705 AK222790	125148	+	AB017494 TSC_hg19_v1_chr16_+_68279299 AY358425 EU832326	125209	+	L41067|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##AB209824|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##NM_004555|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##NM_173163|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##NM_173165|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##BC030146|ESRP2|80004|epithelial splicing regulatory protein 2##BC052309|ESRP2|80004|epithelial splicing regulatory protein 2##AK025571|ESRP2|80004|epithelial splicing regulatory protein 2##NM_024939|ESRP2|80004|epithelial splicing regulatory protein 2##AK300596|PLA2G15|23659|phospholipase A2, group XV##AK074828|PLA2G15|23659|phospholipase A2, group XV##NM_012320|PLA2G15|23659|phospholipase A2, group XV##AK296263|PLA2G15|23659|phospholipase A2, group XV##AK298494|PLA2G15|23659|phospholipase A2, group XV##AL110209|PLA2G15|23659|phospholipase A2, group XV##BC062605|PLA2G15|23659|phospholipase A2, group XV##AK001705|PLA2G15|23659|phospholipase A2, group XV##AK222790|PLA2G15|23659|phospholipase A2, group XV##AB017494|PLA2G15|23659|phospholipase A2, group XV##AY358425|PLA2G15|23659|phospholipase A2, group XV##EU832326|PLA2G15|23659|phospholipase A2, group XV	1.991616	0.0	denovo_WM_7:-73:0.248	denovo_WM_7:-74:0.248	denovo_WM_7:-75:0.248	denovo_WM_7:-76:0.248	denovo_WM_7:88:0.457	denovo_WM_7:89:0.457
chr1	33429308	33429421	reg1004395.p1	7.272	+	AY359883 TSC_hg19_v1_chr1_-_33366959 AY027543 BC020497 BC001418 BC013953 NM_033504 BC023260	-62430	-	TSC_hg19_v1_chr1_+_33352097 DQ426877 AK313907 BC001777 NM_002143	-77280	+	BC062297 NM_001171941	-91283	-	NM_001127361 NM_153341 TSC_hg19_v1_chr1_-_33430415 AK131439	1032	-	AB451267 AB451394 AY080900 U54645 BC009405 AK307731 TSC_hg19_v1_chr1_-_33502450 AK295105 AK296863 BC026705 AK291676 AK297036	73075	-	TSC_hg19_v1_chr1_-_33502463 BC070127 BC090040 U84371 U39945 AY080899	73093	-	AY359883|TMEM54|113452|transmembrane protein 54##AY027543|TMEM54|113452|transmembrane protein 54##BC020497|TMEM54|113452|transmembrane protein 54##BC001418|TMEM54|113452|transmembrane protein 54##BC013953|TMEM54|113452|transmembrane protein 54##NM_033504|TMEM54|113452|transmembrane protein 54##BC023260|TMEM54|113452|transmembrane protein 54##DQ426877|HPCA|3208|hippocalcin##AK313907|HPCA|3208|hippocalcin##BC001777|HPCA|3208|hippocalcin##NM_002143|HPCA|3208|hippocalcin##BC062297|FNDC5|252995|fibronectin type III domain containing 5##NM_001171941|FNDC5|252995|fibronectin type III domain containing 5##NM_001127361|RNF19B|127544|ring finger protein 19B##NM_153341|RNF19B|127544|ring finger protein 19B##AK131439|RNF19B|127544|ring finger protein 19B##AB451267|AK2|204|adenylate kinase 2##AB451394|AK2|204|adenylate kinase 2##AY080900|AK2|204|adenylate kinase 2##U54645|AK2|204|adenylate kinase 2##BC009405|AK2|204|adenylate kinase 2##AK307731|AK2|204|adenylate kinase 2##AK295105|AK2|204|adenylate kinase 2##AK296863|AK2|204|adenylate kinase 2##BC026705|AK2|204|adenylate kinase 2##AK291676|AK2|204|adenylate kinase 2##AK297036|AK2|204|adenylate kinase 2##BC070127|AK2|204|adenylate kinase 2##BC090040|AK2|204|adenylate kinase 2##U84371|AK2|204|adenylate kinase 2##U39945|AK2|204|adenylate kinase 2##AY080899|AK2|204|adenylate kinase 2	0.946192	0.0	denovo_WM_7:-28:0.305	denovo_WM_7:-36:0.229
chr17_ctg5_hap1	575700	575849	reg1005072.p1	7.272	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.552257	0.61942	CTCF.p2:20:0.619	denovo_WM_7:-98:0.552
chr4	71709972	71710110	reg1004667.p2	7.272	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-4404	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-4464	-	AK094806 NM_001098477	-4838	-	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	58072	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	149266	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	149430	+	NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase	0.99689	0.0	denovo_WM_7:-22:0.923
chr17	36807664	36807769	reg1002984.p2	7.271	+	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	-45520	-	BC029278 TSC_hg19_v1_chr17_-_36760969	-46778	-	TSC_hg19_v1_chr17_-_36729122 AK295027	-78594	-	TSC_hg19_v1_chr17_-_36831211 NM_001130677	23469	-	TSC_hg19_v1_chr17_+_36861421 BC064612	53883	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	54174	+	AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##AK295027|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_001130677|C17orf96|100170841|chromosome 17 open reading frame 96##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6	1.992235	0.0	denovo_WM_7:-56:0.504	denovo_WM_7:-57:0.493
chr1	937700	937840	reg1005056.p2	7.269	+	BC012351 TSC_hg19_v1_chr1_-_935476 NM_001142467 NM_021170	-2260	-	AB048791 DQ895490 TSC_hg19_v1_chr1_-_935444	-2372	-	AL136730 NM_001160184 NM_032129 BC101386 BC101387 AB463180 AM393848 BC141658	-35878	+	NM_005101 TSC_hg19_v1_chr1_+_948876 M13755 BC009507	11109	+	TSC_hg19_v1_chr1_+_955499 AB191264 NM_198576	17726	+	TSC_hg19_v1_chr1_+_955536 AB385240	17773	+	BC012351|HES4|57801|hairy and enhancer of split 4 (Drosophila)##NM_001142467|HES4|57801|hairy and enhancer of split 4 (Drosophila)##NM_021170|HES4|57801|hairy and enhancer of split 4 (Drosophila)##AB048791|HES4|57801|hairy and enhancer of split 4 (Drosophila)##DQ895490|HES4|57801|hairy and enhancer of split 4 (Drosophila)##AL136730|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_001160184|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_032129|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC101386|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC101387|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##AM393848|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC141658|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_005101|ISG15|9636|ISG15 ubiquitin-like modifier##M13755|ISG15|9636|ISG15 ubiquitin-like modifier##BC009507|ISG15|9636|ISG15 ubiquitin-like modifier##AB191264|AGRN|375790|agrin##NM_198576|AGRN|375790|agrin	0.999414	0.0	
chr15	74658546	74658691	reg1005366.p2	7.266	+	AK292301 AK056794 NM_001099773 TSC_hg19_v1_chr15_-_74658572	-83	-	AK290709 AK310852 AK026821 NM_182791 BC025689 CU693014	-47713	+	NM_025055 AK057417	-129914	+	AB528448 DQ891578 DQ894771 CU689338 M14565 BC032329 TSC_hg19_v1_chr15_-_74659988 AK225715 AK292300 AK293204 AK293211 AK300178 AK310362 NM_000781	1385	-	NM_001146030 TSC_hg19_v1_chr15_-_74726050	67411	-	AF071542 AM180445 AM180446 AM180447 AM180448 AM180449 AM180450 AM180451 TSC_hg19_v1_chr15_-_74726300 AF030698 AF069493 BC101643 BC101647 AK293280 AK312257 NM_001146029 NM_003612	67694	-	AK292301|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK056794|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##NM_001099773|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK290709|CCDC33|80125|coiled-coil domain containing 33##AK310852|CCDC33|80125|coiled-coil domain containing 33##AK026821|CCDC33|80125|coiled-coil domain containing 33##NM_182791|CCDC33|80125|coiled-coil domain containing 33##BC025689|CCDC33|80125|coiled-coil domain containing 33##NM_025055|CCDC33|80125|coiled-coil domain containing 33##AK057417|CCDC33|80125|coiled-coil domain containing 33##DQ891578|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##DQ894771|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##M14565|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##BC032329|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK225715|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK292300|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK293204|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK293211|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK300178|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK310362|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##NM_000781|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##NM_001146030|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF071542|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180445|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180446|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180447|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180448|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180449|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180450|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180451|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF030698|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF069493|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##BC101643|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##BC101647|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AK293280|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AK312257|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_001146029|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_003612|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)	0.996888	0.0	
chr19	17516506	17516670	reg1005454.p1	7.264	+	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	-22	+	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	-169	-	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	-28456	-	TSC_hg19_v1_chr19_+_17530855 AK057057 AK289487	14260	+	TSC_hg19_v1_chr19_+_17530872 BC011840 NM_138401 BC007883	14311	+	NM_001190844	42787	-	AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##AK057057|FAM125A|93343|family with sequence similarity 125, member A##AK289487|FAM125A|93343|family with sequence similarity 125, member A##BC011840|FAM125A|93343|family with sequence similarity 125, member A##NM_138401|FAM125A|93343|family with sequence similarity 125, member A##BC007883|FAM125A|93343|family with sequence similarity 125, member A##NM_001190844|TMEM221|100130519|transmembrane protein 221	0.0	0.0	
chr9	123694134	123694314	reg1005125.p2	7.264	+	TSC_hg19_v1_chr9_-_123691445 NM_001190945 AK315476	-2764	-	AK090468 NM_005658	-5052	-	AB590501 BT019408 CU692854 TSC_hg19_v1_chr9_-_123688443 U19261 BC024145	-5821	-	M57729 BC113738 BC113740 AK310774 AK310780 BC022299 NM_001735	118320	-	TSC_hg19_v1_chr9_+_123837236 AK307387 BC089415	143038	+	TSC_hg19_v1_chr9_-_123837410 AB209031	143206	-	NM_001190945|TRAF1|7185|TNF receptor-associated factor 1##AK315476|TRAF1|7185|TNF receptor-associated factor 1##AK090468|TRAF1|7185|TNF receptor-associated factor 1##NM_005658|TRAF1|7185|TNF receptor-associated factor 1##BT019408|TRAF1|7185|TNF receptor-associated factor 1##U19261|TRAF1|7185|TNF receptor-associated factor 1##BC024145|TRAF1|7185|TNF receptor-associated factor 1##M57729|C5|727|complement component 5##BC113738|C5|727|complement component 5##BC113740|C5|727|complement component 5##AK310774|C5|727|complement component 5##AK310780|C5|727|complement component 5##BC022299|C5|727|complement component 5##NM_001735|C5|727|complement component 5##AK307387|CNTRL|11064|centriolin##BC089415|CNTRL|11064|centriolin##AB209031|C5|727|complement component 5	0.938456	0.0	denovo_WM_7:11:0.938
chr16	2583505	2583685	reg1000653.p3	7.263	+	BC146925 BC146926 AY584596 NM_001048212	-2212	-	TSC_hg19_v1_chr16_+_2570406 NM_001145815 NM_015944 AF132948 AK296877 AK300747 BC018734 CU676298	-13205	+	TSC_hg19_v1_chr16_+_2564000 AB463422 BT007155 CR541930 CR541951	-19543	+	TSC_hg19_v1_chr16_+_2587985 NM_002613 NM_031268	4373	+	TSC_hg19_v1_chr16_+_2587992 AB209835	4398	+	TSC_hg19_v1_chr16_+_2588020 BC006339 BC012103	4415	+	BC146925|CEMP1|752014|cementum protein 1##BC146926|CEMP1|752014|cementum protein 1##AY584596|CEMP1|752014|cementum protein 1##NM_001048212|CEMP1|752014|cementum protein 1##NM_001145815|AMDHD2|51005|amidohydrolase domain containing 2##NM_015944|AMDHD2|51005|amidohydrolase domain containing 2##AF132948|AMDHD2|51005|amidohydrolase domain containing 2##AK296877|AMDHD2|51005|amidohydrolase domain containing 2##AK300747|AMDHD2|51005|amidohydrolase domain containing 2##BC018734|AMDHD2|51005|amidohydrolase domain containing 2##BT007155|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##CR541930|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##CR541951|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##NM_002613|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##NM_031268|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##AB209835|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC006339|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC012103|PDPK1|5170|3-phosphoinositide dependent protein kinase-1	0.540009	0.0	denovo_WM_7:-4:0.389
chr3	151975529	151975709	reg1004384.p2	7.263	+	TSC_hg19_v1_chr3_+_151591430 AK290420 NM_033050 BC030948 AF247785	-384166	+	NM_001086 L32179 BC020706 AK290628 BC032309 CU689322	-443715	+	TSC_hg19_v1_chr3_+_151488214 BC014344	-487389	+	NM_021038 NM_207292	10209	+	TSC_hg19_v1_chr3_+_151986753 BC050535 BC043493	11123	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	11726	-	AK290420|SUCNR1|56670|succinate receptor 1##NM_033050|SUCNR1|56670|succinate receptor 1##BC030948|SUCNR1|56670|succinate receptor 1##AF247785|SUCNR1|56670|succinate receptor 1##NM_001086|AADAC|13|arylacetamide deacetylase (esterase)##L32179|AADAC|13|arylacetamide deacetylase (esterase)##BC020706|AADAC|13|arylacetamide deacetylase (esterase)##AK290628|AADAC|13|arylacetamide deacetylase (esterase)##BC032309|AADAC|13|arylacetamide deacetylase (esterase)##BC014344|LOC201651|201651|arylacetamide deacetylase (esterase) pseudogene##NM_021038|MBNL1|4154|muscleblind-like (Drosophila)##NM_207292|MBNL1|4154|muscleblind-like (Drosophila)##BC050535|MBNL1|4154|muscleblind-like (Drosophila)##BC043493|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093	0.0	0.0	
chr14	89883541	89883643	reg1004434.p1	7.260	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-182	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-4816	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-592599	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	202003	-	BC001787 BX247991 AK298930 AK094740 NM_145231	537468	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	538654	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.0	0.0	
chr5	35263491	35263611	reg1003844.p2	7.259	+	NM_000949	-32729	-	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	-32974	-	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	-145328	-	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	354458	+	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	593482	+	NM_001042625 BC017586 NM_144647	675257	-	NM_000949|PRLR|5618|prolactin receptor##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like	1.020979	0.0	denovo_WM_7:-28:0.791
chr6	7146938	7147072	reg1005204.p2	7.259	+	BX647723 TSC_hg19_v1_chr6_+_7108910	-38102	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	-38782	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	-38970	+	BT007387 CR456961 AB464204 DQ892751 EU176743 TSC_hg19_v1_chr6_-_7313433 Z12830 AK075562 AK222762 AK222809 AK291550 AK312653 CR936719 BC007710 NM_003144	166441	-	AF414185 NM_001170692 NM_001170693 NM_205864 TSC_hg19_v1_chr6_-_7389974	242962	-	TSC_hg19_v1_chr6_+_7390042 AY094356 AK314467 BC006104 NM_031480 AK054568	243093	+	BX647723|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##BT007387|SSR1|6745|signal sequence receptor, alpha##CR456961|SSR1|6745|signal sequence receptor, alpha##DQ892751|SSR1|6745|signal sequence receptor, alpha##EU176743|SSR1|6745|signal sequence receptor, alpha##Z12830|SSR1|6745|signal sequence receptor, alpha##AK075562|SSR1|6745|signal sequence receptor, alpha##AK222762|SSR1|6745|signal sequence receptor, alpha##AK222809|SSR1|6745|signal sequence receptor, alpha##AK291550|SSR1|6745|signal sequence receptor, alpha##AK312653|SSR1|6745|signal sequence receptor, alpha##CR936719|SSR1|6745|signal sequence receptor, alpha##BC007710|SSR1|6745|signal sequence receptor, alpha##NM_003144|SSR1|6745|signal sequence receptor, alpha##AF414185|CAGE1|285782|cancer antigen 1##NM_001170692|CAGE1|285782|cancer antigen 1##NM_001170693|CAGE1|285782|cancer antigen 1##NM_205864|CAGE1|285782|cancer antigen 1##AY094356|RIOK1|83732|RIO kinase 1 (yeast)##AK314467|RIOK1|83732|RIO kinase 1 (yeast)##BC006104|RIOK1|83732|RIO kinase 1 (yeast)##NM_031480|RIOK1|83732|RIO kinase 1 (yeast)##AK054568|RIOK1|83732|RIO kinase 1 (yeast)	0.988715	0.0	denovo_WM_7:0:0.709
chr11	117009507	117009606	reg1003361.p1	7.258	+	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	-40523	-	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-301201	-	TSC_hg19_v1_chr11_+_116700622 BC121081 BC134419 NM_000040 BC027977	-308932	+	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	5477	+	TSC_hg19_v1_chr11_+_117049458 AK292501	40001	+	TSC_hg19_v1_chr11_+_117049872 AF151799 BC114522 BC114959 AY358442 NM_001040455 AK292974	40336	+	BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##BC121081|APOC3|345|apolipoprotein C-III##BC134419|APOC3|345|apolipoprotein C-III##NM_000040|APOC3|345|apolipoprotein C-III##BC027977|APOC3|345|apolipoprotein C-III##NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292501|SIDT2|51092|SID1 transmembrane family, member 2##AF151799|SIDT2|51092|SID1 transmembrane family, member 2##BC114522|SIDT2|51092|SID1 transmembrane family, member 2##BC114959|SIDT2|51092|SID1 transmembrane family, member 2##AY358442|SIDT2|51092|SID1 transmembrane family, member 2##NM_001040455|SIDT2|51092|SID1 transmembrane family, member 2##AK292974|SIDT2|51092|SID1 transmembrane family, member 2	1.013724	0.0	
chr5	123393172	123393334	reg1004363.p1	7.258	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-545371	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-634109	-	NM_001136239 AK297992 AF272898 AF272899	-968409	+	BC131507 AB033107 BC151226 NM_020747	687535	-	NM_001146319 AK316288 AK300154	2302561	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	2365590	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.999759	0.0	denovo_WM_7:77:0.298	denovo_WM_7:78:0.298	denovo_WM_7:79:0.298
chr18	56065390	56065514	reg1004210.p2	7.257	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-176602	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-176649	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-176690	+	BX647796 NM_052947	230736	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	273189	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	273276	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	1.989612	0.0	denovo_WM_7:-32:0.217	denovo_WM_7:-54:0.213
chr10	70847565	70847712	reg1003202.p2	7.256	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-99103	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-131706	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-186521	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	198	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	246	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	36253	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	0.0	0.0	
chr2	201440867	201440986	reg1003644.p1	7.256	+	TSC_hg19_v1_chr2_+_201390929 NM_001160033 NM_001160046 NM_152524 AK095291 BC048349 BC110583 BX647433 AK302457 BC092412 AY094614	-50024	+	TSC_hg19_v1_chr2_-_201374792 BC059366 BC045189 AK290867 BC067755 AK055884 NM_152387	-66094	-	TSC_hg19_v1_chr2_+_201171424 AF193059 BC065817	-269477	+	TSC_hg19_v1_chr2_+_201450590 AK301052	9661	+	AB046692 NM_001159 TSC_hg19_v1_chr2_+_201450748 BC117179 BC117181	9858	+	AK297930 AK307738 TSC_hg19_v1_chr2_+_201474048	33071	+	NM_001160033|SGOL2|151246|shugoshin-like 2 (S. pombe)##NM_001160046|SGOL2|151246|shugoshin-like 2 (S. pombe)##NM_152524|SGOL2|151246|shugoshin-like 2 (S. pombe)##AK095291|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC048349|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC110583|SGOL2|151246|shugoshin-like 2 (S. pombe)##BX647433|SGOL2|151246|shugoshin-like 2 (S. pombe)##AK302457|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC092412|SGOL2|151246|shugoshin-like 2 (S. pombe)##AY094614|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC059366|KCTD18|130535|potassium channel tetramerisation domain containing 18##BC045189|KCTD18|130535|potassium channel tetramerisation domain containing 18##AK290867|KCTD18|130535|potassium channel tetramerisation domain containing 18##BC067755|KCTD18|130535|potassium channel tetramerisation domain containing 18##AK055884|KCTD18|130535|potassium channel tetramerisation domain containing 18##NM_152387|KCTD18|130535|potassium channel tetramerisation domain containing 18##AF193059|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##BC065817|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AK301052|AOX1|316|aldehyde oxidase 1##AB046692|AOX1|316|aldehyde oxidase 1##NM_001159|AOX1|316|aldehyde oxidase 1##BC117179|AOX1|316|aldehyde oxidase 1##BC117181|AOX1|316|aldehyde oxidase 1##AK297930|AOX1|316|aldehyde oxidase 1##AK307738|AOX1|316|aldehyde oxidase 1	1.941081	0.998486	denovo_WM_7:19:0.947	denovo_WM_7:34:0.970	CTCF.p2:-48:0.998
chr14	74037714	74037863	reg1004162.p3	7.255	+	TSC_hg19_v1_chr14_+_74035979 DQ893488 DQ896406 BC004436 BC006500 L40401 AY005822 CU678722	-1791	+	AK001939 DQ082755 AK223635 NM_006821 BC006335 TSC_hg19_v1_chr14_+_74035788	-2013	+	AK093515 AX748177 BC047590 NM_001220484 NM_203309	-12142	-	BC090945 NM_152331	20621	+	DQ082756 NM_001037162	45759	+	NM_001201366 NM_031427 AF542071 BC005343 AL833654 AK315392	73865	+	DQ893488|ACOT2|10965|acyl-CoA thioesterase 2##DQ896406|ACOT2|10965|acyl-CoA thioesterase 2##BC004436|ACOT2|10965|acyl-CoA thioesterase 2##BC006500|ACOT2|10965|acyl-CoA thioesterase 2##L40401|ACOT2|10965|acyl-CoA thioesterase 2##AY005822|ACOT2|10965|acyl-CoA thioesterase 2##AK001939|ACOT2|10965|acyl-CoA thioesterase 2##DQ082755|ACOT2|10965|acyl-CoA thioesterase 2##AK223635|ACOT2|10965|acyl-CoA thioesterase 2##NM_006821|ACOT2|10965|acyl-CoA thioesterase 2##BC006335|ACOT2|10965|acyl-CoA thioesterase 2##AK093515|HEATR4|399671|HEAT repeat containing 4##BC047590|HEATR4|399671|HEAT repeat containing 4##NM_001220484|HEATR4|399671|HEAT repeat containing 4##NM_203309|HEATR4|399671|HEAT repeat containing 4##BC090945|ACOT4|122970|acyl-CoA thioesterase 4##NM_152331|ACOT4|122970|acyl-CoA thioesterase 4##DQ082756|ACOT6|641372|acyl-CoA thioesterase 6##NM_001037162|ACOT6|641372|acyl-CoA thioesterase 6##NM_001201366|DNAL1|83544|dynein, axonemal, light chain 1##NM_031427|DNAL1|83544|dynein, axonemal, light chain 1##AF542071|DNAL1|83544|dynein, axonemal, light chain 1##BC005343|DNAL1|83544|dynein, axonemal, light chain 1##AL833654|DNAL1|83544|dynein, axonemal, light chain 1##AK315392|DNAL1|83544|dynein, axonemal, light chain 1	0.996727	0.926435	CTCF.p2:40:0.926
chr1	1626440	1626567	reg1004898.p2	7.254	+	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-2286	-	BC092507 TSC_hg19_v1_chr1_-_1624149 AK125619	-2345	-	TSC_hg19_v1_chr1_-_1623947 CR936618 BC062371	-2538	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	29273	-	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	50958	-	AK296722 NM_001198995	63577	-	AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##BC092507|SLC35E2B|728661|solute carrier family 35, member E2B##AK125619|SLC35E2B|728661|solute carrier family 35, member E2B##CR936618|SLC35E2B|728661|solute carrier family 35, member E2B##BC062371|SLC35E2|9906|solute carrier family 35, member E2##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase	0.998815	0.027668	
chr19	2093077	2093183	reg1003724.p2	7.254	+	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	-7887	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-41897	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-46889	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	3135	-	TSC_hg19_v1_chr19_-_2096297 AL832474	3164	-	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	3730	+	AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4	0.99138	0.0	denovo_WM_7:37:0.923
chr8	123811012	123811183	reg1005048.p1	7.254	+	TSC_hg19_v1_chr8_+_123794108 AB020661	-16994	+	BC042145 TSC_hg19_v1_chr8_+_123794000	-17103	+	TSC_hg19_v1_chr8_+_123793897 NM_014943	-17186	+	TSC_hg19_v1_chr8_+_123963651 EU446694 AB083653	152602	+	BC002457 TSC_hg19_v1_chr8_-_124054522	243410	-	AY358818 TSC_hg19_v1_chr8_-_124054540 AK303826	243443	-	AB020661|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##EU446694|ZHX2|22882|zinc fingers and homeoboxes 2##AB083653|ZHX2|22882|zinc fingers and homeoboxes 2##BC002457|DERL1|79139|Der1-like domain family, member 1##AY358818|DERL1|79139|Der1-like domain family, member 1##AK303826|DERL1|79139|Der1-like domain family, member 1	0.980576	0.0	denovo_WM_7:-48:0.778
chr12	118784896	118785036	reg1004254.p2	7.253	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-210988	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-211043	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-211091	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	25662	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	25764	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	29436	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.0	0.0	
chr2	3466082	3466241	reg1004424.p2	7.253	+	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	-82656	+	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	-84605	-	TSC_hg19_v1_chr2_-_2335085 AK307797	-1131077	-	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	57137	-	TSC_hg19_v1_chr2_-_3523345 NM_018269	57190	-	AJ224117 BT019670 CR541820 DQ892597 DQ895824 TSC_hg19_v1_chr2_-_3605880 AF048994 AK096913 AF048995 AK075490	139718	-	AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK307797|MYT1L|23040|myelin transcription factor 1-like##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1##NM_018269|ADI1|55256|acireductone dioxygenase 1##AJ224117|RNASEH1|246243|ribonuclease H1##BT019670|RNASEH1|246243|ribonuclease H1##CR541820|RNASEH1|246243|ribonuclease H1##DQ892597|RNASEH1|246243|ribonuclease H1##DQ895824|RNASEH1|246243|ribonuclease H1##AF048994|RNASEH1|246243|ribonuclease H1##AK096913|RNASEH1|246243|ribonuclease H1##AF048995|RNASEH1|246243|ribonuclease H1##AK075490|RNASEH1|246243|ribonuclease H1	0.0	0.231051	CTCF.p2:40:0.231
chr1	28459051	28459206	reg1004745.p1	7.252	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-44004	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-172610	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-197567	+	NM_000952 NM_001164723	44326	-	S52624 AK292053 NM_001164721 NM_001164722	61284	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	100403	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.995666	0.0	denovo_WM_7:12:0.456	denovo_WM_7:13:0.456
chr8	23360775	23360899	reg1004657.p1	7.252	+	TSC_hg19_v1_chr8_-_23315197 BC034477 NM_001128930 NM_004901	-45624	-	AJ131358 TSC_hg19_v1_chr8_-_23315161 AK300464 AF016032	-45683	-	TSC_hg19_v1_chr8_-_23261684 NM_002318	-99139	-	NM_016612 TSC_hg19_v1_chr8_+_23386375	25533	+	TSC_hg19_v1_chr8_+_23386395 BC132799 BC132801	25577	+	AK074708 AK223194 AF223466 AY032628 BC015013 TSC_hg19_v1_chr8_+_23386513 HQ258387 AK075313 AL833186	25686	+	BC034477|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##NM_001128930|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##NM_004901|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##AJ131358|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##AK300464|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##AF016032|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##NM_002318|LOXL2|4017|lysyl oxidase-like 2##NM_016612|SLC25A37|51312|solute carrier family 25, member 37##BC132799|SLC25A37|51312|solute carrier family 25, member 37##BC132801|SLC25A37|51312|solute carrier family 25, member 37##AK074708|SLC25A37|51312|solute carrier family 25, member 37##AK223194|SLC25A37|51312|solute carrier family 25, member 37##AF223466|SLC25A37|51312|solute carrier family 25, member 37##AY032628|SLC25A37|51312|solute carrier family 25, member 37##BC015013|SLC25A37|51312|solute carrier family 25, member 37##HQ258387|SLC25A37|51312|solute carrier family 25, member 37##AK075313|SLC25A37|51312|solute carrier family 25, member 37##AL833186|SLC25A37|51312|solute carrier family 25, member 37	1.40882	0.0	denovo_WM_7:71:0.411
chr4	71602860	71603004	reg1005138.p1	7.250	+	TSC_hg19_v1_chr4_+_71587713 NM_001037442 NM_014961 BC051716 BC053837 BC098433 AB020678 BC071988	-15212	+	BC030809 TSC_hg19_v1_chr4_-_71571018	-31934	-	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	-32113	+	AK094806 NM_001098477	102271	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	102645	-	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	102705	-	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3##NM_014961|RUFY3|22902|RUN and FYVE domain containing 3##BC051716|RUFY3|22902|RUN and FYVE domain containing 3##BC053837|RUFY3|22902|RUN and FYVE domain containing 3##BC098433|RUFY3|22902|RUN and FYVE domain containing 3##AB020678|RUFY3|22902|RUN and FYVE domain containing 3##BC071988|RUFY3|22902|RUN and FYVE domain containing 3##BC030809|LOC641510|641510|uncharacterized LOC641510##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1	0.588319	0.0	denovo_WM_7:26:0.546
chr10	89221658	89221790	reg1005210.p2	7.249	+	BC092519 NM_001009610	-104274	+	TSC_hg19_v1_chr10_+_89102478 BC082979	-119126	+	TSC_hg19_v1_chr10_-_89102214 BC047063	-119466	-	NM_001178117 NM_004897 TSC_hg19_v1_chr10_+_89264649 AK304624 AK312937 AL050356 AF084943 AB209819 AF084944 AY358938 BC032504 AF046914 CU689404	42751	+	AK309176 NM_001178118	45865	+	TSC_hg19_v1_chr10_+_89419623 NM_001015880 NM_004670 BC009894 AK312556 AF091242 AF150754 AF074331 AF173365 DQ893625 DQ895430 AF313907	197821	+	BC092519|FAM22A|728118|family with sequence similarity 22, member A##NM_001009610|FAM22D|728130|family with sequence similarity 22, member D##BC082979|LOC677759|677759|uncharacterized LOC677759##BC047063|LOC728190|728190|uncharacterized LOC728190##NM_001178117|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##NM_004897|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AK304624|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AK312937|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AL050356|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AF084943|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AB209819|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AF084944|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AY358938|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##BC032504|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AF046914|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AK309176|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##NM_001178118|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##NM_001015880|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##NM_004670|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##BC009894|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AK312556|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF091242|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF150754|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF074331|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF173365|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##DQ893625|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##DQ895430|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF313907|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2	0.984584	0.0	
chr12	42877816	42877996	reg1002917.p2	7.249	+	TSC_hg19_v1_chr12_-_42877811 NM_001144882 NM_001144883	-107	-	AK122881 TSC_hg19_v1_chr12_-_42877772	-148	-	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	-490	-	BC114939 BC114940 AF399844 AF543759 AF543760 AK056499 TSC_hg19_v1_chr12_-_42983549 NM_153026	105586	-	AF488804 AJ515153 AJ515154 NM_025003	1067817	-	AL136759 TSC_hg19_v1_chr12_-_44152566 BX647494 NM_001098615 AK097331 AK225903 NM_001098614 BC020781 CR627435 BC068502 AK092030 AX747323 NM_031292	1274669	-	NM_001144882|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144883|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114939|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114940|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF399844|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543759|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543760|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK056499|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_153026|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF488804|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AJ515153|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AJ515154|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##NM_025003|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AL136759|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BX647494|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_001098615|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK097331|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK225903|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_001098614|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BC020781|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##CR627435|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BC068502|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK092030|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_031292|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like	1.990705	0.0	denovo_WM_7:-62:0.208	denovo_WM_7:-84:0.209
chr1	52192373	52192550	reg1005006.p1	7.249	+	TSC_hg19_v1_chr1_+_52082763 AK056617 AK091703 AK027535 AF392445 AY178997	-109694	+	NM_024586 NM_148906 NM_148908 NM_148909	-109916	+	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	-207437	-	TSC_hg19_v1_chr1_+_52195487 NM_148904 NM_148905 NM_148907 AK315167	3016	+	TSC_hg19_v1_chr1_+_52195549 AK027707 BC025978	3085	+	TSC_hg19_v1_chr1_+_52195604 AK022554	3193	+	AK056617|OSBPL9|114883|oxysterol binding protein-like 9##AK091703|OSBPL9|114883|oxysterol binding protein-like 9##AK027535|OSBPL9|114883|oxysterol binding protein-like 9##AF392445|OSBPL9|114883|oxysterol binding protein-like 9##AY178997|OSBPL9|114883|oxysterol binding protein-like 9##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_148904|OSBPL9|114883|oxysterol binding protein-like 9##NM_148905|OSBPL9|114883|oxysterol binding protein-like 9##NM_148907|OSBPL9|114883|oxysterol binding protein-like 9##AK315167|OSBPL9|114883|oxysterol binding protein-like 9##AK027707|OSBPL9|114883|oxysterol binding protein-like 9##BC025978|OSBPL9|114883|oxysterol binding protein-like 9##AK022554|OSBPL9|114883|oxysterol binding protein-like 9	0.015013	0.0	
chr1	8936941	8937093	reg1003513.p2	7.249	+	GU170215 NM_001201483	-5383	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	-59425	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-453000	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	1690	-	BC015641 BC027725 TSC_hg19_v1_chr1_-_8938743 BC004458 BC009912 AK222517 BC022545 D28437	1718	-	TSC_hg19_v1_chr1_-_8938746 AK223192 BX537400 AK309291 AK315417	1745	-	GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)##BC015641|ENO1|2023|enolase 1, (alpha)##BC027725|ENO1|2023|enolase 1, (alpha)##BC004458|ENO1|2023|enolase 1, (alpha)##BC009912|ENO1|2023|enolase 1, (alpha)##AK222517|ENO1|2023|enolase 1, (alpha)##BC022545|ENO1|2023|enolase 1, (alpha)##D28437|ENO1|2023|enolase 1, (alpha)##AK223192|ENO1|2023|enolase 1, (alpha)##BX537400|ENO1|2023|enolase 1, (alpha)##AK309291|ENO1|2023|enolase 1, (alpha)##AK315417|ENO1|2023|enolase 1, (alpha)	1.985365	0.0	denovo_WM_7:42:0.976
chr2	64927420	64927590	reg1005135.p1	7.249	+	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-46458	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-46656	-	TSC_hg19_v1_chr2_+_64751580 AL833962	-175903	+	TSC_hg19_v1_chr2_-_65090764 AK097952	163236	-	TSC_hg19_v1_chr2_-_65159574 BC037562	232072	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	288095	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##AL833962|AFTPH|54812|aftiphilin##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.997017	0.0	denovo_WM_7:24:0.239	denovo_WM_7:25:0.239	denovo_WM_7:26:0.239	denovo_WM_7:27:0.239
chr19	857138	857224	reg1005449.p2	7.248	+	M34379 NM_001972 X05875 BC074816 BC074817 TSC_hg19_v1_chr19_+_852302	-4884	+	X56606 BC096183 BC096184 BC096185 BC096186 TSC_hg19_v1_chr19_+_840998 NM_002777 AB527757 X55668	-16189	+	TSC_hg19_v1_chr19_+_840963 M75154	-16218	+	TSC_hg19_v1_chr19_+_859663 BC057807 AK300963 NM_001928	2480	+	TSC_hg19_v1_chr19_+_859675 AB590861 AJ313463 DQ884409 M84526 BC051001	2514	+	BC034529 BC040146 TSC_hg19_v1_chr19_+_860648 CR536575	3460	+	M34379|ELANE|1991|elastase, neutrophil expressed##NM_001972|ELANE|1991|elastase, neutrophil expressed##X05875|ELANE|1991|elastase, neutrophil expressed##BC074816|ELANE|1991|elastase, neutrophil expressed##BC074817|ELANE|1991|elastase, neutrophil expressed##X56606|PRTN3|5657|proteinase 3##BC096183|PRTN3|5657|proteinase 3##BC096184|PRTN3|5657|proteinase 3##BC096185|PRTN3|5657|proteinase 3##BC096186|PRTN3|5657|proteinase 3##NM_002777|PRTN3|5657|proteinase 3##X55668|PRTN3|5657|proteinase 3##M75154|PRTN3|5657|proteinase 3##BC057807|CFD|1675|complement factor D (adipsin)##AK300963|CFD|1675|complement factor D (adipsin)##NM_001928|CFD|1675|complement factor D (adipsin)##AJ313463|CFD|1675|complement factor D (adipsin)##DQ884409|CFD|1675|complement factor D (adipsin)##M84526|CFD|1675|complement factor D (adipsin)##BC051001|CFD|1675|complement factor D (adipsin)##BC034529|CFD|1675|complement factor D (adipsin)##BC040146|CFD|1675|complement factor D (adipsin)##CR536575|CFD|1675|complement factor D (adipsin)	0.921724	0.998875	CTCF.p2:-15:0.999	denovo_WM_7:45:0.727
chr5	90568750	90568930	reg1004359.p1	7.248	+	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-714226	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-743474	-	NM_006467 AK295434 U93868	-798138	+	AK091866 TSC_hg19_v1_chr5_-_90610220	41405	-	TSC_hg19_v1_chr5_+_90676181 BC043415	107322	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	110292	-	AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3	1.204969	0.0	denovo_WM_7:-38:0.220	denovo_WM_7:-56:0.734
chr12	57079145	57079241	reg1003867.p5	7.247	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-39367	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-39438	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-49067	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	2657	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	2747	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	2808	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	1.788613	0.0	denovo_WM_7:3:0.325	denovo_WM_7:4:0.332	denovo_WM_7:-11:0.417	denovo_WM_7:-12:0.261
chr14	23273754	23273882	reg1005001.p1	7.247	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-37973	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-206629	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-215684	-	TSC_hg19_v1_chr14_-_23284568 AK025377	10761	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	10814	-	AB020532 BX161519 NM_001126105	11240	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.0	0.0	
chr6	137518920	137519067	reg1004876.p2	7.246	+	AY044429 AY358737 AY040566 AY040567 AY040568 AY358111 AJ313161 AJ313162 NM_052962 NM_181309 NM_181310	-24242	-	AF184971 AK315293 BC113574 BC113602 NM_014432 AK307072	-152748	-	TSC_hg19_v1_chr6_-_137365811 AY358883 HQ258452	-153155	-	TSC_hg19_v1_chr6_-_137540496 BT006814 AB527981 CU675119 AF056979 AK294252	21475	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	21519	-	TSC_hg19_v1_chr6_-_137540544 BC005333	21552	-	AY044429|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358737|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040566|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040567|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040568|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358111|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313161|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313162|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_052962|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181309|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181310|IL22RA2|116379|interleukin 22 receptor, alpha 2##AF184971|IL20RA|53832|interleukin 20 receptor, alpha##AK315293|IL20RA|53832|interleukin 20 receptor, alpha##BC113574|IL20RA|53832|interleukin 20 receptor, alpha##BC113602|IL20RA|53832|interleukin 20 receptor, alpha##NM_014432|IL20RA|53832|interleukin 20 receptor, alpha##AK307072|IL20RA|53832|interleukin 20 receptor, alpha##AY358883|IL20RA|53832|interleukin 20 receptor, alpha##HQ258452|IL20RA|53832|interleukin 20 receptor, alpha##BT006814|IFNGR1|3459|interferon gamma receptor 1##AF056979|IFNGR1|3459|interferon gamma receptor 1##AK294252|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1	0.996727	0.0	denovo_WM_7:-19:0.527	denovo_WM_7:-20:0.470
chr17	44290402	44290548	reg1005126.p2	7.245	+	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	-20166	-	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	-20321	-	TSC_hg19_v1_chr17_+_44101553 AB073354	-188905	+	AK291259 NM_001193465	12252	-	BC040501 CR749232 NM_014834	82021	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	148647	-	BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##AB073354|MAPT|4137|microtubule-associated protein tau##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_014834|LRRC37A|9884|leucine rich repeat containing 37A##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A	0.552257	0.61942	CTCF.p2:-20:0.619	denovo_WM_7:98:0.552
chr4	15677120	15677279	reg1005757.p1	7.245	+	TSC_hg19_v1_chr4_-_15656974 BX537957 BC030656 AK295510 NM_001193534 NM_001193535 NM_012161	-20184	-	TSC_hg19_v1_chr4_-_15656965 AF142481 AK310860 BC012320	-20245	-	AF157323 AM392665 AM393475 CU688970 DQ892452 DQ895664 AF176700 AF199420 TSC_hg19_v1_chr4_-_15656935	-20284	-	TSC_hg19_v1_chr4_+_15683378 NM_001145191 BC048993	6127	+	TSC_hg19_v1_chr4_+_15683449 BC035074	6253	+	NM_004334 D21878 TSC_hg19_v1_chr4_+_15704687	27430	+	BX537957|FBXL5|26234|F-box and leucine-rich repeat protein 5##BC030656|FBXL5|26234|F-box and leucine-rich repeat protein 5##AK295510|FBXL5|26234|F-box and leucine-rich repeat protein 5##NM_001193534|FBXL5|26234|F-box and leucine-rich repeat protein 5##NM_001193535|FBXL5|26234|F-box and leucine-rich repeat protein 5##NM_012161|FBXL5|26234|F-box and leucine-rich repeat protein 5##AF142481|FBXL5|26234|F-box and leucine-rich repeat protein 5##AK310860|FBXL5|26234|F-box and leucine-rich repeat protein 5##BC012320|FBXL5|26234|F-box and leucine-rich repeat protein 5##AF157323|FBXL5|26234|F-box and leucine-rich repeat protein 5##AM392665|FBXL5|26234|F-box and leucine-rich repeat protein 5##AM393475|FBXL5|26234|F-box and leucine-rich repeat protein 5##DQ892452|FBXL5|26234|F-box and leucine-rich repeat protein 5##DQ895664|FBXL5|26234|F-box and leucine-rich repeat protein 5##AF176700|FBXL5|26234|F-box and leucine-rich repeat protein 5##AF199420|FBXL5|26234|F-box and leucine-rich repeat protein 5##NM_001145191|FAM200B|285550|family with sequence similarity 200, member B##BC048993|FAM200B|285550|family with sequence similarity 200, member B##BC035074|FAM200B|285550|family with sequence similarity 200, member B##NM_004334|BST1|683|bone marrow stromal cell antigen 1##D21878|BST1|683|bone marrow stromal cell antigen 1	1.267987	0.0	denovo_WM_7:0:0.278	denovo_WM_7:14:0.337
chrY	2566117	2566242	reg1004289.p1	7.241	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	-6867	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-197191	-	BC015030 NM_001171135	-197600	-	S56543 S53156 AB464705 EU446863 BC074923 BC074924 L10101 NM_003140	89455	-	TSC_hg19_v1_chrY_+_2709618 NM_001008	143430	+	TSC_hg19_v1_chrY_+_2709642 AK292819 AK222594 AB055773 BC010286 M58459	143462	+	M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##S56543|SRY|6736|sex determining region Y##S53156|SRY|6736|sex determining region Y##EU446863|SRY|6736|sex determining region Y##BC074923|SRY|6736|sex determining region Y##BC074924|SRY|6736|sex determining region Y##L10101|SRY|6736|sex determining region Y##NM_003140|SRY|6736|sex determining region Y##NM_001008|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##AK292819|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##AK222594|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##BC010286|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##M58459|RPS4Y1|6192|ribosomal protein S4, Y-linked 1	1.891434	0.0	denovo_WM_7:34:0.488	denovo_WM_7:38:0.245	denovo_WM_7:54:0.290	denovo_WM_7:55:0.290	denovo_WM_7:56:0.306
chr17	49127799	49127979	reg1000166.p1	7.240	+	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-3661	-	AK313904 NM_001243877	-182551	-	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	-184193	-	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	70266	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	103022	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	103043	+	BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	0.0	0.0	
chr17	17627670	17627835	reg1005536.p2	7.239	+	TSC_hg19_v1_chr17_+_17608164 AF147359	-19554	+	TSC_hg19_v1_chr17_+_17584772 AB058723 AY172136 NM_030665	-42967	+	TSC_hg19_v1_chr17_-_17495007 CU690728 AF044214 AF113126 BC000557 BC050593 NM_148172 AK302251	-132777	-	AB373959 TSC_hg19_v1_chr17_-_17726919 S66167 AK091131 AK293795 AK294800 AK297113	99152	-	TSC_hg19_v1_chr17_-_17740301 U00968 BC063281	112543	-	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	112572	-	AB058723|RAI1|10743|retinoic acid induced 1##AY172136|RAI1|10743|retinoic acid induced 1##NM_030665|RAI1|10743|retinoic acid induced 1##AF044214|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AF113126|PEMT|10400|phosphatidylethanolamine N-methyltransferase##BC000557|PEMT|10400|phosphatidylethanolamine N-methyltransferase##BC050593|PEMT|10400|phosphatidylethanolamine N-methyltransferase##NM_148172|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AK302251|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AB373959|SREBF1|6720|sterol regulatory element binding transcription factor 1##S66167|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK091131|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK293795|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK294800|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK297113|SREBF1|6720|sterol regulatory element binding transcription factor 1##U00968|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC063281|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1	0.998192	0.0	
chr19	11074026	11074188	reg1000346.p1	7.239	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-2283	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-2357	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-2392	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	20769	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	125970	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	126025	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	1.853674	0.0	denovo_WM_7:-35:0.850	denovo_WM_7:-50:0.301	denovo_WM_7:-51:0.307	denovo_WM_7:-52:0.312
chr21	36043398	36043558	reg1005219.p2	7.239	+	AF448438 AF448439 NM_053277	-1791	+	BT007363 CU678256 AF303449 U85266 TSC_hg19_v1_chr21_-_35987486 BC002864 AK092184 AX747397 NM_004414 AY325903	-56132	-	NM_203417 U85265	-56734	-	S76350 GU070939 TSC_hg19_v1_chr21_-_36231874	188358	-	S76345 S76346 GU070941 TSC_hg19_v1_chr21_-_36252995	209458	-	TSC_hg19_v1_chr21_-_36259250 EU093088	215794	-	AF448438|CLIC6|54102|chloride intracellular channel 6##AF448439|CLIC6|54102|chloride intracellular channel 6##NM_053277|CLIC6|54102|chloride intracellular channel 6##BT007363|RCAN1|1827|regulator of calcineurin 1##AF303449|RCAN1|1827|regulator of calcineurin 1##U85266|RCAN1|1827|regulator of calcineurin 1##BC002864|RCAN1|1827|regulator of calcineurin 1##AK092184|RCAN1|1827|regulator of calcineurin 1##NM_004414|RCAN1|1827|regulator of calcineurin 1##AY325903|RCAN1|1827|regulator of calcineurin 1##NM_203417|RCAN1|1827|regulator of calcineurin 1##U85265|RCAN1|1827|regulator of calcineurin 1##S76350|RUNX1|861|runt-related transcription factor 1##S76345|RUNX1|861|runt-related transcription factor 1##S76346|RUNX1|861|runt-related transcription factor 1	1.011801	0.0	
chr9	29796371	29796500	reg1003287.p2	7.239	+	AK056372 NM_152570	-1077133	-	AK057806 JN681271 NM_145005	-2222594	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	-2222964	-	TSC_hg19_v1_chr9_+_32384618 NM_002197 AF261088	2588155	+	TSC_hg19_v1_chr9_+_32384622 AK057904	2588192	+	TSC_hg19_v1_chr9_+_32384648 AK308752 Z11559	2588214	+	AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2##AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##NM_002197|ACO1|48|aconitase 1, soluble##AF261088|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble##AK308752|ACO1|48|aconitase 1, soluble##Z11559|ACO1|48|aconitase 1, soluble	0.786287	0.0	denovo_WM_7:-53:0.228	denovo_WM_7:-60:0.312
chr16	71599529	71599672	reg1000606.p3	7.238	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-39507	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-76385	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-103412	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	11372	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	60497	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	149100	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	0.0	0.040967	
chrX	21498103	21498212	reg1004195.p1	7.238	+	TSC_hg19_v1_chrX_+_21392535 NM_001168647 NM_001168648 NM_001168649 NM_014927 AB020709 AK294728	-105649	+	TSC_hg19_v1_chrX_-_20285141 AK294373	-1212993	-	TSC_hg19_v1_chrX_-_20285001 AB208933	-1213200	-	BC109031 AK092279 AX747450 NM_153270	178274	-	BC005948 AF129505 AJ250584 NM_014332 AK312134	278060	-	NM_015884 TSC_hg19_v1_chrX_+_21857734	359542	+	NM_001168647|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168648|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168649|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_014927|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AB020709|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AK294728|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC109031|KLHL34|257240|kelch-like 34 (Drosophila)##AK092279|KLHL34|257240|kelch-like 34 (Drosophila)##NM_153270|KLHL34|257240|kelch-like 34 (Drosophila)##BC005948|SMPX|23676|small muscle protein, X-linked##AF129505|SMPX|23676|small muscle protein, X-linked##AJ250584|SMPX|23676|small muscle protein, X-linked##NM_014332|SMPX|23676|small muscle protein, X-linked##AK312134|SMPX|23676|small muscle protein, X-linked##NM_015884|MBTPS2|51360|membrane-bound transcription factor peptidase, site 2	0.936861	0.332917	denovo_WM_7:-22:0.244	denovo_WM_7:-24:0.645	CTCF.p2:41:0.333
chr19	2789637	2789763	reg1004875.p2	7.237	+	TSC_hg19_v1_chr19_+_2785534 BC002391 NM_003249 BC000135 BC013878 Z50115 U29366 EU176234 CU677940 CU680690	-4139	+	TSC_hg19_v1_chr19_-_2783332 NM_003021	-6358	-	AK293535 TSC_hg19_v1_chr19_-_2783326	-6373	-	TSC_hg19_v1_chr19_+_2819873 NM_001102651 AK299752 BC047777 AK092136 AX747373	30173	+	TSC_hg19_v1_chr19_+_2819942 BC000113 CU690506	30305	+	NM_001172775 NM_152791 AK093163 AX747966 AL832140 BX647423 BC022022 AK292954	51758	+	BC002391|THOP1|7064|thimet oligopeptidase 1##NM_003249|THOP1|7064|thimet oligopeptidase 1##BC000135|THOP1|7064|thimet oligopeptidase 1##BC013878|THOP1|7064|thimet oligopeptidase 1##Z50115|THOP1|7064|thimet oligopeptidase 1##U29366|THOP1|7064|thimet oligopeptidase 1##EU176234|THOP1|7064|thimet oligopeptidase 1##NM_003021|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AK293535|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##NM_001102651|ZNF554|115196|zinc finger protein 554##AK299752|ZNF554|115196|zinc finger protein 554##BC047777|ZNF554|115196|zinc finger protein 554##AK092136|ZNF554|115196|zinc finger protein 554##BC000113|ZNF554|115196|zinc finger protein 554##NM_001172775|ZNF555|148254|zinc finger protein 555##NM_152791|ZNF555|148254|zinc finger protein 555##AK093163|ZNF555|148254|zinc finger protein 555##AL832140|ZNF555|148254|zinc finger protein 555##BX647423|ZNF555|148254|zinc finger protein 555##BC022022|ZNF555|148254|zinc finger protein 555##AK292954|ZNF555|148254|zinc finger protein 555	0.991754	0.0	denovo_WM_7:58:0.709	denovo_WM_7:60:0.226
chr19	39038218	39038376	reg1004814.p2	7.237	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-113953	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-121425	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-144396	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	70291	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	71416	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	71519	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.997545	0.0	denovo_WM_7:69:0.817
chr1	229695004	229695158	reg1003848.p2	7.236	+	TSC_hg19_v1_chr1_-_229694431 AB013380 BC064930 AF216833 NM_012089	-653	-	TSC_hg19_v1_chr1_-_229644079 AK001676 NM_018230 AK304061	-50981	-	AB384686 DQ894268 EU176236 AK092339 AK314431 AX747487 TSC_hg19_v1_chr1_-_229644075 BC020107 AK304861	-51046	-	BC041094 TSC_hg19_v1_chr1_-_229761747	66664	-	NM_001025247 NM_014409 TSC_hg19_v1_chr1_-_229761804	66717	-	AK291013 TSC_hg19_v1_chr1_+_229761973 D50923 NM_014777 BC059381	66893	+	AB013380|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##BC064930|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##AF216833|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##NM_012089|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##AK001676|NUP133|55746|nucleoporin 133kDa##NM_018230|NUP133|55746|nucleoporin 133kDa##AK304061|NUP133|55746|nucleoporin 133kDa##DQ894268|NUP133|55746|nucleoporin 133kDa##EU176236|NUP133|55746|nucleoporin 133kDa##AK092339|NUP133|55746|nucleoporin 133kDa##AK314431|NUP133|55746|nucleoporin 133kDa##BC020107|NUP133|55746|nucleoporin 133kDa##AK304861|NUP133|55746|nucleoporin 133kDa##BC041094|TAF5L|27097|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##NM_001025247|TAF5L|27097|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##NM_014409|TAF5L|27097|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK291013|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##D50923|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##NM_014777|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC059381|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	1.631098	0.0	denovo_WM_7:59:0.556	denovo_WM_7:74:0.665
chr14	23037535	23037682	reg1004862.p1	7.236	+	X58763 TSC_hg19_v1_chr14_+_22989364	-48259	+	AB463964 NM_001001912 AY726598	-904286	+	NM_001005466 AB529274 BC137371 BC137382	-934562	-	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	20478	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	20526	-	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	29581	+	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4	0.99378	0.0	denovo_WM_7:-1:0.248	denovo_WM_7:-2:0.248	denovo_WM_7:-3:0.248	denovo_WM_7:-4:0.248
chr12	103499957	103500134	reg1005020.p1	7.235	+	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	-147953	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-148524	+	L47726 NM_000277 U49897	-188665	-	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	389701	-	AY311388 AJ295695 NM_017564 AB052958	481016	+	AB032773 TSC_hg19_v1_chr12_-_104234857	734779	-	DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3	0.0	0.0	
chr5	169197194	169197328	reg1004089.p1	7.235	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-132961	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-133017	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-186540	+	AK055998 NM_001129891	210482	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	335710	+	BC030767 NM_001102609 BC092511	462735	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.995796	0.0	
chr16	88868870	88869050	reg1004630.p1	7.234	+	NM_001142864 AB384448 TSC_hg19_v1_chr16_-_88851456	-17542	-	TSC_hg19_v1_chr16_+_88772910 BC121805 BC125269 NM_001012759 NM_001012762 BC157881 AK299521 BC108659 BC021056 BC063512 BC080540	-96037	+	TSC_hg19_v1_chr16_-_88772809 NM_178841	-96138	-	AB053172 NM_030928 TSC_hg19_v1_chr16_+_88870207	1237	+	TSC_hg19_v1_chr16_+_88870215 AF321125 BC000137 BC009410 BC008860 BC008676	1320	+	TSC_hg19_v1_chr16_-_88878337 BC107151 CR749423 NM_000485 NM_001030018	9375	-	NM_001142864|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##AB384448|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##BC121805|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC125269|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012759|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012762|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC157881|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##AK299521|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC108659|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC021056|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC063512|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC080540|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_178841|RNF166|115992|ring finger protein 166##AB053172|CDT1|81620|chromatin licensing and DNA replication factor 1##NM_030928|CDT1|81620|chromatin licensing and DNA replication factor 1##AF321125|CDT1|81620|chromatin licensing and DNA replication factor 1##BC000137|CDT1|81620|chromatin licensing and DNA replication factor 1##BC009410|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008860|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008676|CDT1|81620|chromatin licensing and DNA replication factor 1##BC107151|APRT|353|adenine phosphoribosyltransferase##CR749423|APRT|353|adenine phosphoribosyltransferase##NM_000485|APRT|353|adenine phosphoribosyltransferase##NM_001030018|APRT|353|adenine phosphoribosyltransferase	1.116661	0.0	denovo_WM_7:16:0.207
chr17	74733665	74733786	reg1004427.p1	7.234	+	AF015183 NM_001242532 NM_001242533 NM_001242535 NM_001242536 NM_001242537 NM_024311	-200	+	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	-269	-	AB385010 BT007250 CU688224 DQ891210 DQ894393 X62447 BC001303 BC000339 M90104 AK223252 BC066958 BC070086 AK092489 AK093626 AK097069 AK098209 AK123712 AK126432 AK297813 AX748231 TSC_hg19_v1_chr17_-_74733414	-396	-	TSC_hg19_v1_chr17_+_74734111 AK308058 AF015184 AK000233	428	+	TSC_hg19_v1_chr17_+_74864556 AK057861 AB235153 BC041577 NM_001199172 NM_144677 BC062354	130941	+	AB114297 NM_198955 BC144361	135035	+	AF015183|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242532|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242533|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242535|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242536|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242537|MFSD11|79157|major facilitator superfamily domain containing 11##NM_024311|MFSD11|79157|major facilitator superfamily domain containing 11##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2##BT007250|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ891210|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ894393|SRSF2|6427|serine/arginine-rich splicing factor 2##X62447|SRSF2|6427|serine/arginine-rich splicing factor 2##BC001303|SRSF2|6427|serine/arginine-rich splicing factor 2##BC000339|SRSF2|6427|serine/arginine-rich splicing factor 2##M90104|SRSF2|6427|serine/arginine-rich splicing factor 2##AK223252|SRSF2|6427|serine/arginine-rich splicing factor 2##BC066958|SRSF2|6427|serine/arginine-rich splicing factor 2##BC070086|SRSF2|6427|serine/arginine-rich splicing factor 2##AK092489|SRSF2|6427|serine/arginine-rich splicing factor 2##AK093626|SRSF2|6427|serine/arginine-rich splicing factor 2##AK097069|SRSF2|6427|serine/arginine-rich splicing factor 2##AK098209|SRSF2|6427|serine/arginine-rich splicing factor 2##AK123712|SRSF2|6427|serine/arginine-rich splicing factor 2##AK126432|SRSF2|6427|serine/arginine-rich splicing factor 2##AK308058|MFSD11|79157|major facilitator superfamily domain containing 11##AF015184|MFSD11|79157|major facilitator superfamily domain containing 11##AK000233|MFSD11|79157|major facilitator superfamily domain containing 11##AB235153|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC041577|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001199172|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_144677|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC062354|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##AB114297|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_198955|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC144361|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	0.0	0.0	
chr19	13905533	13905713	reg1000202.p2	7.234	+	TSC_hg19_v1_chr19_+_13885286 BC015465 AF086483 AF078852 DQ891569 DQ894761 AK311855	-20339	+	TSC_hg19_v1_chr19_+_13885269 NM_014047	-20358	+	TSC_hg19_v1_chr19_+_13875374 AY358176 BC001703 EU832338 EU832423 AM392616 AM393224 AB528180	-30232	+	TSC_hg19_v1_chr19_+_13906256 AK024452 NM_023072	622	+	AL832183 BX640708 TSC_hg19_v1_chr19_-_13947102	41479	-	BC101209 BC101210 NM_001098622	82439	+	BC015465|C19orf53|28974|chromosome 19 open reading frame 53##AF086483|C19orf53|28974|chromosome 19 open reading frame 53##AF078852|C19orf53|28974|chromosome 19 open reading frame 53##DQ891569|C19orf53|28974|chromosome 19 open reading frame 53##DQ894761|C19orf53|28974|chromosome 19 open reading frame 53##AK311855|C19orf53|28974|chromosome 19 open reading frame 53##NM_014047|C19orf53|28974|chromosome 19 open reading frame 53##AY358176|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##BC001703|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832338|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832423|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM392616|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM393224|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AK024452|ZSWIM4|65249|zinc finger, SWIM-type containing 4##NM_023072|ZSWIM4|65249|zinc finger, SWIM-type containing 4##AL832183|LOC284454|284454|uncharacterized LOC284454##BX640708|LOC284454|284454|uncharacterized LOC284454##BC101209|NANOS3|342977|nanos homolog 3 (Drosophila)##BC101210|NANOS3|342977|nanos homolog 3 (Drosophila)##NM_001098622|NANOS3|342977|nanos homolog 3 (Drosophila)	0.0	0.0	
chr13	41226337	41226517	reg1005212.p1	7.233	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-996566	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-1049065	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-1049100	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	14285	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	118865	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	118905	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.99033	0.0	denovo_WM_7:7:0.237	denovo_WM_7:8:0.237	denovo_WM_7:9:0.237	denovo_WM_7:10:0.237
chr19	16478402	16478582	reg1000406.p4	7.233	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-42723	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-42851	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-169742	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	104284	-	TSC_hg19_v1_chr19_-_16582810 AK291359	104360	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	128478	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	1.02496	0.0	
chr16	22449209	22449342	reg1004718.p1	7.231	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	-63480	-	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	-140527	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	-231602	+	NM_001135865 BC036263 AK296338 CU690320	75707	+	TSC_hg19_v1_chr16_+_22825482 AY359095 AK313463	376227	+	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	376576	+	DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AY359095|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK313463|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2	0.0	0.0	
chr17	30838582	30838736	reg1006125.p1	7.230	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-23899	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-24062	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-24588	+	CU688936 AB385376 AB018270 BC146763 NM_015194	365236	-	TSC_hg19_v1_chr17_-_31204141 AK127942	365464	-	TSC_hg19_v1_chr17_-_31204196 BC030602	365554	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	0.995697	0.0	denovo_WM_7:-28:0.983
chr16	89164410	89164585	reg1004664.p1	7.229	+	TSC_hg19_v1_chr16_+_89160285 BC028399 AK290963 BC064609 BC072391 AK075499	-4190	+	NM_001127214 NM_001243279 NM_174917 TSC_hg19_v1_chr16_+_89160259	-4260	+	TSC_hg19_v1_chr16_-_89119364 AK055272	-45128	-	TSC_hg19_v1_chr16_+_89213949 AK090408	49449	+	TSC_hg19_v1_chr16_+_89238171 D83542 NM_004933 AK308596 AK308631 BC008951 DQ893277 DQ896608	73702	+	NM_001242757	102031	-	BC028399|ACSF3|197322|acyl-CoA synthetase family member 3##AK290963|ACSF3|197322|acyl-CoA synthetase family member 3##BC064609|ACSF3|197322|acyl-CoA synthetase family member 3##BC072391|ACSF3|197322|acyl-CoA synthetase family member 3##AK075499|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001127214|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001243279|ACSF3|197322|acyl-CoA synthetase family member 3##NM_174917|ACSF3|197322|acyl-CoA synthetase family member 3##D83542|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##NM_004933|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##AK308631|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##BC008951|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##DQ893277|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##DQ896608|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##NM_001242757|SLC22A31|146429|solute carrier family 22, member 31	0.994217	0.0	denovo_WM_7:-6:0.544	denovo_WM_7:-7:0.435
chr19	5903791	5903952	reg1005431.p3	7.229	+	AJ539081 TSC_hg19_v1_chr19_-_5903795 AX775861 BC069045 AY726561 AK127692 AK291087	-111	-	BC140905 NM_002034 U27329 U27330	-33323	-	TSC_hg19_v1_chr19_-_5851461 AK291852 X53578 AK313575 U27326 U27327 U27328 NM_000149 NM_001097639 NM_001097640 NM_001097641	-52390	-	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	136	-	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	998	+	AK226026 NM_004058 NM_080590 BC080599 BC019065 BC101513 BC104766 X97966 BC011961	10470	+	AJ539081|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC069045|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AY726561|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK127692|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC140905|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##NM_002034|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27329|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27330|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##AK291852|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##X53578|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AK313575|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27326|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27327|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27328|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_000149|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097639|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097640|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097641|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK226026|CAPS|828|calcyphosine##NM_004058|CAPS|828|calcyphosine##NM_080590|CAPS|828|calcyphosine##BC080599|CAPS|828|calcyphosine##BC019065|CAPS|828|calcyphosine##BC101513|CAPS|828|calcyphosine##BC104766|CAPS|828|calcyphosine##X97966|CAPS|828|calcyphosine##BC011961|CAPS|828|calcyphosine	0.0	0.0	
chr9	132286729	132286909	reg1003951.p1	7.229	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	-35378	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	-35465	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	-203524	+	BC112353 AK093122 AX747938 NM_199350	96218	-	TSC_hg19_v1_chr9_+_132388441 NM_014064 AK290957 AK292332 AK298840 AK307056 AK313829	101606	+	TSC_hg19_v1_chr9_+_132388461 BC001396 BC033234 AF110776	101651	+	BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##BC112353|C9orf50|375759|chromosome 9 open reading frame 50##AK093122|C9orf50|375759|chromosome 9 open reading frame 50##NM_199350|C9orf50|375759|chromosome 9 open reading frame 50##NM_014064|METTL11A|28989|methyltransferase like 11A##AK290957|METTL11A|28989|methyltransferase like 11A##AK292332|METTL11A|28989|methyltransferase like 11A##AK298840|METTL11A|28989|methyltransferase like 11A##AK307056|METTL11A|28989|methyltransferase like 11A##AK313829|METTL11A|28989|methyltransferase like 11A##BC001396|METTL11A|28989|methyltransferase like 11A##BC033234|METTL11A|28989|methyltransferase like 11A##AF110776|METTL11A|28989|methyltransferase like 11A	0.988213	0.0	denovo_WM_7:-65:0.561	denovo_WM_7:-67:0.327
chr10	5937911	5938043	reg1005325.p1	7.228	+	AF380349 NM_032807	-1629	+	TSC_hg19_v1_chr10_+_5932218 AF456237 BC113375 BC113377 AF454502 BC110884	-5733	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	-5766	+	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	81536	-	AF035279 BC107777 BC065506 NM_001243539	82037	-	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	166245	-	AF380349|FBXO18|84893|F-box protein, helicase, 18##NM_032807|FBXO18|84893|F-box protein, helicase, 18##AF456237|FBXO18|84893|F-box protein, helicase, 18##BC113375|FBXO18|84893|F-box protein, helicase, 18##BC113377|FBXO18|84893|F-box protein, helicase, 18##AF454502|FBXO18|84893|F-box protein, helicase, 18##BC110884|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha	0.0	0.0	
chr14	69301670	69301796	reg1005836.p2	7.228	+	NM_001244701 AB528867	-38749	-	NM_001244698 NM_004926	-41103	-	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	-42013	-	TSC_hg19_v1_chr14_-_69354901 BX641076	53206	-	BX248020 AK299362 TSC_hg19_v1_chr14_-_69444987	143253	-	BT007207 AB590251 DQ890778 DQ895768 EU716325 FJ410030 TSC_hg19_v1_chr14_-_69445830 M95178 BC015766	144097	-	NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BX641076|ACTN1|87|actinin, alpha 1##BX248020|ACTN1|87|actinin, alpha 1##AK299362|ACTN1|87|actinin, alpha 1##BT007207|ACTN1|87|actinin, alpha 1##DQ890778|ACTN1|87|actinin, alpha 1##DQ895768|ACTN1|87|actinin, alpha 1##EU716325|ACTN1|87|actinin, alpha 1##FJ410030|ACTN1|87|actinin, alpha 1##M95178|ACTN1|87|actinin, alpha 1##BC015766|ACTN1|87|actinin, alpha 1	0.995712	0.0	
chr2	38835060	38835239	reg1005124.p2	7.228	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-5008	-	TSC_hg19_v1_chr2_-_38830071 BC008217	-5077	-	TSC_hg19_v1_chr2_-_38830065 AY236963 BC017480 AK291462	-5109	-	NM_138801 TSC_hg19_v1_chr2_+_38893054	57903	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	58106	+	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	143367	-	AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##BC008217|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AY236963|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##BC017480|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK291462|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7	0.0	0.0	
chr7	92443152	92443267	reg1005241.p2	7.228	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-223511	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-223567	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-285103	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	19558	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	20011	-	AK313491 TSC_hg19_v1_chr7_-_92465884	22689	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.0	0.0	
chr8	43018606	43018745	reg1001760.p2	7.228	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-23028	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-23042	+	TSC_hg19_v1_chr8_+_42995606 NM_152419	-23095	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	128930	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	5154820	+	TSC_hg19_v1_chr8_+_48173521 AK303579	5154844	+	BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_152419|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146	1.698208	0.0	denovo_WM_7:-3:0.736	denovo_WM_7:-46:0.601
chr12	77456664	77456812	reg1004180.p2	7.227	+	BC000992 AY349166 U57646 TSC_hg19_v1_chr12_-_77272800 NM_001321	-183955	-	AB385406 CU690640 AF049612 AF161412 TSC_hg19_v1_chr12_+_77158026 AB097013 AB097035 AK292866 AK299089	-298712	+	TSC_hg19_v1_chr12_+_77157894 BC050324 AB023163	-298834	+	BC136366 BC136367 TSC_hg19_v1_chr12_-_77459334 BC017481 NM_203394	2551	-	NM_014903 AJ488201	768394	+	AK094616 NM_001135805	1801034	+	BC000992|CSRP2|1466|cysteine and glycine-rich protein 2##AY349166|CSRP2|1466|cysteine and glycine-rich protein 2##U57646|CSRP2|1466|cysteine and glycine-rich protein 2##NM_001321|CSRP2|1466|cysteine and glycine-rich protein 2##AF049612|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AF161412|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097013|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097035|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK292866|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK299089|ZDHHC17|23390|zinc finger, DHHC-type containing 17##BC050324|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB023163|ZDHHC17|23390|zinc finger, DHHC-type containing 17##BC136366|E2F7|144455|E2F transcription factor 7##BC136367|E2F7|144455|E2F transcription factor 7##BC017481|E2F7|144455|E2F transcription factor 7##NM_203394|E2F7|144455|E2F transcription factor 7##NM_014903|NAV3|89795|neuron navigator 3##AJ488201|NAV3|89795|neuron navigator 3##AK094616|SYT1|6857|synaptotagmin I##NM_001135805|SYT1|6857|synaptotagmin I	0.997015	0.0	denovo_WM_7:-61:0.424	denovo_WM_7:-62:0.424
chr1	26297937	26298086	reg1004957.p1	7.225	+	NM_203399	-64644	-	BC082228 AB209282 X53305 BX647885 Z11566 AK303692 AK054594 AK311801 D28428 TSC_hg19_v1_chr1_-_26232911 J04991 BC014353 NM_001145454 NM_005563	-65070	-	NM_203401	-65368	-	BC001158 U89386 TSC_hg19_v1_chr1_-_26324541 AK313815 D87845 NM_000437	26579	-	TSC_hg19_v1_chr1_+_26348265 NM_004455 U67191	50256	+	TSC_hg19_v1_chr1_+_26348308 BC065528	50355	+	NM_203399|STMN1|3925|stathmin 1##BC082228|STMN1|3925|stathmin 1##AB209282|STMN1|3925|stathmin 1##X53305|STMN1|3925|stathmin 1##BX647885|STMN1|3925|stathmin 1##Z11566|STMN1|3925|stathmin 1##AK303692|STMN1|3925|stathmin 1##AK054594|STMN1|3925|stathmin 1##AK311801|STMN1|3925|stathmin 1##D28428|STMN1|3925|stathmin 1##J04991|STMN1|3925|stathmin 1##BC014353|STMN1|3925|stathmin 1##NM_001145454|STMN1|3925|stathmin 1##NM_005563|STMN1|3925|stathmin 1##NM_203401|STMN1|3925|stathmin 1##BC001158|PAFAH2|5051|platelet-activating factor acetylhydrolase 2, 40kDa##U89386|PAFAH2|5051|platelet-activating factor acetylhydrolase 2, 40kDa##AK313815|PAFAH2|5051|platelet-activating factor acetylhydrolase 2, 40kDa##D87845|PAFAH2|5051|platelet-activating factor acetylhydrolase 2, 40kDa##NM_000437|PAFAH2|5051|platelet-activating factor acetylhydrolase 2, 40kDa##NM_004455|EXTL1|2134|exostoses (multiple)-like 1##U67191|EXTL1|2134|exostoses (multiple)-like 1##BC065528|EXTL1|2134|exostoses (multiple)-like 1	0.0	0.0	
chr11	39392868	39393048	reg1005037.p1	7.224	+	AK292664 BC022397 NM_000536 NM_001243785 NM_001243786	-2773156	-	TSC_hg19_v1_chr11_+_36616072 AK290833 DQ121386 AK095997 AK299642 BC009561 BC051031 NM_138787 AK302634	-2776854	+	NM_000448 M29474	-2803390	+	AY358293 TSC_hg19_v1_chr11_-_40314659 BC041374	921636	-	AB046800 NM_020929	922705	-	TSC_hg19_v1_chr11_+_43333523 NM_001142930 NM_001142931 NM_001243747 NM_006595	3940560	+	AK292664|RAG2|5897|recombination activating gene 2##BC022397|RAG2|5897|recombination activating gene 2##NM_000536|RAG2|5897|recombination activating gene 2##NM_001243785|RAG2|5897|recombination activating gene 2##NM_001243786|RAG2|5897|recombination activating gene 2##AK290833|C11orf74|119710|chromosome 11 open reading frame 74##DQ121386|C11orf74|119710|chromosome 11 open reading frame 74##AK095997|C11orf74|119710|chromosome 11 open reading frame 74##AK299642|C11orf74|119710|chromosome 11 open reading frame 74##BC009561|C11orf74|119710|chromosome 11 open reading frame 74##BC051031|C11orf74|119710|chromosome 11 open reading frame 74##NM_138787|C11orf74|119710|chromosome 11 open reading frame 74##AK302634|C11orf74|119710|chromosome 11 open reading frame 74##NM_000448|RAG1|5896|recombination activating gene 1##M29474|RAG1|5896|recombination activating gene 1##AY358293|LRRC4C|57689|leucine rich repeat containing 4C##BC041374|LRRC4C|57689|leucine rich repeat containing 4C##AB046800|LRRC4C|57689|leucine rich repeat containing 4C##NM_020929|LRRC4C|57689|leucine rich repeat containing 4C##NM_001142930|API5|8539|apoptosis inhibitor 5##NM_001142931|API5|8539|apoptosis inhibitor 5##NM_001243747|API5|8539|apoptosis inhibitor 5##NM_006595|API5|8539|apoptosis inhibitor 5	0.999681	0.0	denovo_WM_7:43:0.829
chr2	216844627	216844780	reg1005183.p2	7.223	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-543921	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-544183	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-554731	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	33633	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	101841	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	101989	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	1.319204	0.0	denovo_WM_7:6:0.424	denovo_WM_7:9:0.275
chr3	42089945	42090125	reg1005253.p2	7.222	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-86476	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-849011	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-849086	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	42798	+	TSC_hg19_v1_chr3_+_42190749 AK294221	100713	+	AL713787 TSC_hg19_v1_chr3_+_42190865	100812	+	BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1	1.641313	0.0	denovo_WM_7:-19:0.647	denovo_WM_7:31:0.779
chrX	108496171	108496290	reg1004436.p1	7.222	+	NM_003604 AF007567	-516608	-	TSC_hg19_v1_chrX_+_107683035 AK311302 BC151846 M90464 NM_000495 NM_033380	-813146	+	BT007228 L22763 U04845 NM_001847 BC005305	-813567	-	NM_001522 L37378	229055	-	AK023289 NM_018698 BC120984 BC120985	282784	+	NM_001242617 TSC_hg19_v1_chrX_+_108780077 AF201942 BC014888 AF212223	283853	+	NM_003604|IRS4|8471|insulin receptor substrate 4##AF007567|IRS4|8471|insulin receptor substrate 4##BC151846|COL4A5|1287|collagen, type IV, alpha 5##M90464|COL4A5|1287|collagen, type IV, alpha 5##NM_000495|COL4A5|1287|collagen, type IV, alpha 5##NM_033380|COL4A5|1287|collagen, type IV, alpha 5##BT007228|COL4A6|1288|collagen, type IV, alpha 6##L22763|COL4A6|1288|collagen, type IV, alpha 6##U04845|COL4A6|1288|collagen, type IV, alpha 6##NM_001847|COL4A6|1288|collagen, type IV, alpha 6##BC005305|COL4A6|1288|collagen, type IV, alpha 6##NM_001522|GUCY2F|2986|guanylate cyclase 2F, retinal##L37378|GUCY2F|2986|guanylate cyclase 2F, retinal##AK023289|NXT2|55916|nuclear transport factor 2-like export factor 2##NM_018698|NXT2|55916|nuclear transport factor 2-like export factor 2##BC120984|NXT2|55916|nuclear transport factor 2-like export factor 2##BC120985|NXT2|55916|nuclear transport factor 2-like export factor 2##NM_001242617|NXT2|55916|nuclear transport factor 2-like export factor 2##AF201942|NXT2|55916|nuclear transport factor 2-like export factor 2##BC014888|NXT2|55916|nuclear transport factor 2-like export factor 2##AF212223|NXT2|55916|nuclear transport factor 2-like export factor 2	0.911998	0.0	denovo_WM_7:-5:0.395	denovo_WM_7:-6:0.349
chr14	93017978	93018092	reg1004679.p1	7.221	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-38076	+	NM_153646 AF520704 AF520705 BC069653	-227859	+	AK295059 NM_153647	-228499	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	100601	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	100788	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	196924	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.0	0.0	
chr3	52497613	52497764	reg1004995.p1	7.221	+	TSC_hg19_v1_chr3_+_52489646 BC056900	-8039	+	TSC_hg19_v1_chr3_+_52489645 AK297657 AK315001 BC038102 AK291398 BC054494 AF082516 BC050552 AK027428	-8057	+	TSC_hg19_v1_chr3_+_52489516 NM_007184	-8175	+	TSC_hg19_v1_chr3_+_52529355 NM_015136	31665	+	BC150250 D87433 AB052956 AB052957 TSC_hg19_v1_chr3_+_52529384 AJ275213 DQ786774 AB384451	31710	+	TSC_hg19_v1_chr3_-_52567787 NM_001134231	70065	-	BC056900|NISCH|11188|nischarin##AK297657|NISCH|11188|nischarin##AK315001|NISCH|11188|nischarin##BC038102|NISCH|11188|nischarin##AK291398|NISCH|11188|nischarin##BC054494|NISCH|11188|nischarin##AF082516|NISCH|11188|nischarin##BC050552|NISCH|11188|nischarin##AK027428|NISCH|11188|nischarin##NM_007184|NISCH|11188|nischarin##NM_015136|STAB1|23166|stabilin 1##BC150250|STAB1|23166|stabilin 1##D87433|STAB1|23166|stabilin 1##AB052956|STAB1|23166|stabilin 1##AB052957|STAB1|23166|stabilin 1##AJ275213|STAB1|23166|stabilin 1##DQ786774|STAB1|23166|stabilin 1##NM_001134231|NT5DC2|64943|5'-nucleotidase domain containing 2	1.075178	0.0	
chr19	39047590	39047705	reg1004274.p1	7.219	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-123303	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-130775	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-153746	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	60941	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	62066	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	62169	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.992647	0.254805	CTCF.p2:-51:0.216
chr5	126066507	126066651	reg1005192.p1	7.219	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-99164	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-129947	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-135723	-	NM_005573 BC052951	45736	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	46252	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	46303	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.99962	0.0	
chr7	87943665	87943799	reg1005496.p1	7.219	+	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	-7518	-	TSC_hg19_v1_chr7_-_87856292 AK296601 NM_198901	-87438	-	TSC_hg19_v1_chr7_-_87849391 AK129770 AK310366 NM_003130	-94327	-	BC140826 BC140829 AK056672 AY295769 NM_181646	444984	+	BC028365 NM_152706	481298	-	NM_012449 TSC_hg19_v1_chr7_+_89783782 AK308452 BC011802	1840005	+	BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##AK296601|SRI|6717|sorcin##NM_198901|SRI|6717|sorcin##AK129770|SRI|6717|sorcin##AK310366|SRI|6717|sorcin##NM_003130|SRI|6717|sorcin##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B##BC028365|C7orf62|219557|chromosome 7 open reading frame 62##NM_152706|C7orf62|219557|chromosome 7 open reading frame 62##NM_012449|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK308452|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##BC011802|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1	1.008303	0.0	denovo_WM_7:20:0.900
chr2	57844552	57844704	reg1006464.p1	7.218	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-1431719	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-1432862	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-1433423	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	429126	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	429360	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	623854	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	0.0	0.0	
chr4	48816188	48816341	reg1004863.p1	7.218	+	TSC_hg19_v1_chr4_-_48782286 BC040987 BC050336 NM_015030	-33966	-	TSC_hg19_v1_chr4_-_48782266 AL833444	-33995	-	TSC_hg19_v1_chr4_+_48492278 BC136265 AY191416 NM_175619	-323983	+	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	16987	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	92515	-	AK025164 NM_025087 BC137387 BC137388	172008	+	BC040987|FRYL|285527|FRY-like##BC050336|FRYL|285527|FRY-like##NM_015030|FRYL|285527|FRY-like##AL833444|FRYL|285527|FRY-like##BC136265|ZAR1|326340|zygote arrest 1##AY191416|ZAR1|326340|zygote arrest 1##NM_175619|ZAR1|326340|zygote arrest 1##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1##CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	1.986393	0.0	denovo_WM_7:0:0.459	denovo_WM_7:0:0.459	denovo_WM_7:84:0.789
chr10	102133256	102133408	reg1005411.p1	7.217	+	TSC_hg19_v1_chr10_+_102123601 AF113690	-9820	+	TSC_hg19_v1_chr10_+_102121379 AF109362	-11949	+	TSC_hg19_v1_chr10_+_102107256 AB529038	-26071	+	AK023036 TSC_hg19_v1_chr10_+_102133657	296	+	Y11094 NM_003393 AB073637	89473	+	AF274863 BX640914 BC044569 BC053949 BC034946 NM_015490 AK289975 BC071580 AK294551	146318	-	AF109362|SCD|6319|stearoyl-CoA desaturase (delta-9-desaturase)##AK023036|LINC00263|90271|long intergenic non-protein coding RNA 263##Y11094|WNT8B|7479|wingless-type MMTV integration site family, member 8B##NM_003393|WNT8B|7479|wingless-type MMTV integration site family, member 8B##AB073637|WNT8B|7479|wingless-type MMTV integration site family, member 8B##AF274863|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BX640914|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC044569|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC053949|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC034946|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##NM_015490|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK289975|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC071580|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK294551|SEC31B|25956|SEC31 homolog B (S. cerevisiae)	0.980134	0.0	denovo_WM_7:6:0.305	denovo_WM_7:7:0.613
chr19	46856036	46856195	reg1003545.p1	7.217	+	TSC_hg19_v1_chr19_+_46850348 AB527518 AK293402 AK297095 BT007275 BC000750 BC001831 X89416 U25174	-5756	+	TSC_hg19_v1_chr19_+_46850343 NM_001204284 NM_006247 BC001970 AK223222 AK312683	-5821	+	AK021881 TSC_hg19_v1_chr19_+_46844054	-12107	+	AK297668 AL136609 JN703457 NM_032040	60756	-	AL834344 TSC_hg19_v1_chr19_-_46974751 AK290218 BC051688	118607	-	TSC_hg19_v1_chr19_-_46974789 BC032508 NM_001103149 NM_018215	118690	-	AK293402|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297095|PPP5C|5536|protein phosphatase 5, catalytic subunit##BT007275|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC000750|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001831|PPP5C|5536|protein phosphatase 5, catalytic subunit##X89416|PPP5C|5536|protein phosphatase 5, catalytic subunit##U25174|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_001204284|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_006247|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001970|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK223222|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK312683|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK021881|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK297668|CCDC8|83987|coiled-coil domain containing 8##AL136609|CCDC8|83987|coiled-coil domain containing 8##JN703457|CCDC8|83987|coiled-coil domain containing 8##NM_032040|CCDC8|83987|coiled-coil domain containing 8##AL834344|PNMAL1|55228|PNMA-like 1##AK290218|PNMAL1|55228|PNMA-like 1##BC051688|PNMAL1|55228|PNMA-like 1##BC032508|PNMAL1|55228|PNMA-like 1##NM_001103149|PNMAL1|55228|PNMA-like 1##NM_018215|PNMAL1|55228|PNMA-like 1	0.998242	0.0	denovo_WM_7:-28:0.310	denovo_WM_7:-29:0.310	denovo_WM_7:-30:0.310
chr6	121260125	121260305	reg1005369.p2	7.217	+	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	-1589294	-	BX538186 AK091682 AX747126 NM_001100411	-1789869	-	TSC_hg19_v1_chr6_-_119399821 BC060769 NM_024581 AK308316	-1860307	-	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	395428	-	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	496610	+	TSC_hg19_v1_chr6_+_122720699 NM_001135564 NM_001243094 NM_004506	1460480	+	BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##BX538186|FAM184A|79632|family with sequence similarity 184, member A##AK091682|FAM184A|79632|family with sequence similarity 184, member A##NM_001100411|FAM184A|79632|family with sequence similarity 184, member A##BC060769|FAM184A|79632|family with sequence similarity 184, member A##NM_024581|FAM184A|79632|family with sequence similarity 184, member A##AK308316|FAM184A|79632|family with sequence similarity 184, member A##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa##NM_001135564|HSF2|3298|heat shock transcription factor 2##NM_001243094|HSF2|3298|heat shock transcription factor 2##NM_004506|HSF2|3298|heat shock transcription factor 2	0.0	0.0	
chr15	85279575	85279755	reg1005114.p2	7.216	+	TSC_hg19_v1_chr15_-_85259675 BC014508 NM_014300 AK314146	-19984	-	AF090315 AF108945 CR457127 DQ891826 AF087906 AK300693 TSC_hg19_v1_chr15_-_85259371 AK223224 BC000359 AF061737	-20319	-	BC007407 BC007431 NM_021077 NM_205858	-77868	-	TSC_hg19_v1_chr15_+_85291590 D86966	11917	+	TSC_hg19_v1_chr15_+_85291820 NM_014630	12160	+	TSC_hg19_v1_chr15_+_85291875 BC094688	12197	+	BC014508|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##NM_014300|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK314146|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF090315|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF108945|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##CR457127|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##DQ891826|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF087906|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK300693|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK223224|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC000359|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF061737|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC007407|NMB|4828|neuromedin B##BC007431|NMB|4828|neuromedin B##NM_021077|NMB|4828|neuromedin B##NM_205858|NMB|4828|neuromedin B##D86966|ZNF592|9640|zinc finger protein 592##NM_014630|ZNF592|9640|zinc finger protein 592##BC094688|ZNF592|9640|zinc finger protein 592	0.995072	0.0	denovo_WM_7:-45:0.974
chr6	159519782	159519950	reg1004435.p1	7.216	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-53765	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-98645	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-99047	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	70564	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	594384	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	594496	-	BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial	0.0	0.0	
chr8	29603445	29603552	reg1004380.p2	7.216	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-395428	-	AL137704 NM_057158	-397177	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-482884	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	336976	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	337074	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	349445	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.992512	0.0	
chr4	181587474	181587572	reg1005141.p1	7.215	+	TSC_hg19_v1_chr4_-_178363633 NM_000027 NM_001171988	-3223880	-	AK303370 TSC_hg19_v1_chr4_-_178363567 BC012392 AK312982	-3223930	-	AB528385 CR541715 DQ891353 DQ894534 M64073 TSC_hg19_v1_chr4_-_178363547 X55762	-3223982	-	TSC_hg19_v1_chr4_+_183065111 AK308489	1477602	+	NM_001080477 HE578284 HE578285	1657631	+	TSC_hg19_v1_chr4_-_183838533 BC001286 BC088357 AK293135 AK313221 AK310788	2251007	-	NM_000027|AGA|175|aspartylglucosaminidase##NM_001171988|AGA|175|aspartylglucosaminidase##AK303370|AGA|175|aspartylglucosaminidase##BC012392|AGA|175|aspartylglucosaminidase##AK312982|AGA|175|aspartylglucosaminidase##CR541715|AGA|175|aspartylglucosaminidase##DQ891353|AGA|175|aspartylglucosaminidase##DQ894534|AGA|175|aspartylglucosaminidase##M64073|AGA|175|aspartylglucosaminidase##X55762|AGA|175|aspartylglucosaminidase##AK308489|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##NM_001080477|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##BC001286|DCTD|1635|dCMP deaminase##BC088357|DCTD|1635|dCMP deaminase##AK293135|DCTD|1635|dCMP deaminase##AK313221|DCTD|1635|dCMP deaminase##AK310788|DCTD|1635|dCMP deaminase	0.0	0.964368	CTCF.p2:27:0.964
chr3	58340078	58340210	reg1004822.p1	7.214	+	TSC_hg19_v1_chr3_+_58318663 BC008943 AB209688 AK131385 AY437879 AK296215 BC014479 AY847220 AY847221 AY847222 AF399753 CU677017 DQ124707 DQ124708	-21470	+	TSC_hg19_v1_chr3_+_58318618 AY274811 NM_017771 AK000342 AK295542	-21531	+	AK311396 TSC_hg19_v1_chr3_+_58292265 AK311969	-47883	+	M34056 M19123 BC004115 AB528205 AM392999 AM393278 CR541911 CU674222 DQ891366 DQ894546 M34479 M34055 M54788 AB209241 AL117618 AK293153 BC000439 BC001924 TSC_hg19_v1_chr3_-_58419557 AK225569 AK311514 AK313022 J03576 X57778 AK225621 NM_000925 NM_001173468	79338	-	TSC_hg19_v1_chr3_+_58477822 NM_001128214 AK075297	137694	+	AK074934 NM_153331	143947	+	BC008943|PXK|54899|PX domain containing serine/threonine kinase##AB209688|PXK|54899|PX domain containing serine/threonine kinase##AK131385|PXK|54899|PX domain containing serine/threonine kinase##AY437879|PXK|54899|PX domain containing serine/threonine kinase##AK296215|PXK|54899|PX domain containing serine/threonine kinase##BC014479|PXK|54899|PX domain containing serine/threonine kinase##AY847220|PXK|54899|PX domain containing serine/threonine kinase##AY847221|PXK|54899|PX domain containing serine/threonine kinase##AY847222|PXK|54899|PX domain containing serine/threonine kinase##AF399753|PXK|54899|PX domain containing serine/threonine kinase##DQ124707|PXK|54899|PX domain containing serine/threonine kinase##DQ124708|PXK|54899|PX domain containing serine/threonine kinase##AY274811|PXK|54899|PX domain containing serine/threonine kinase##NM_017771|PXK|54899|PX domain containing serine/threonine kinase##AK000342|PXK|54899|PX domain containing serine/threonine kinase##AK295542|PXK|54899|PX domain containing serine/threonine kinase##AK311396|RPP14|11102|ribonuclease P/MRP 14kDa subunit##AK311969|RPP14|11102|ribonuclease P/MRP 14kDa subunit##M34056|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M19123|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC004115|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AM392999|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AM393278|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##CR541911|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##DQ891366|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##DQ894546|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M34479|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M34055|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M54788|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AB209241|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AL117618|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK293153|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC000439|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC001924|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK225569|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK311514|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK313022|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##J03576|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##X57778|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK225621|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_000925|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_001173468|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_001128214|KCTD6|200845|potassium channel tetramerisation domain containing 6##AK075297|KCTD6|200845|potassium channel tetramerisation domain containing 6##AK074934|KCTD6|200845|potassium channel tetramerisation domain containing 6##NM_153331|KCTD6|200845|potassium channel tetramerisation domain containing 6	0.992338	0.0	denovo_WM_7:39:0.496	denovo_WM_7:40:0.496
chr11	355208	355389	reg1000813.p3	7.213	+	TSC_hg19_v1_chr11_-_320925 X57352	-34311	-	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	-34454	-	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	-41287	+	TSC_hg19_v1_chr11_+_369724 NM_178537 AB089939 BC131528	14467	+	TSC_hg19_v1_chr11_+_394208 BC000081 NM_007183 AK025067 AK223511 Z98265	38914	+	AF053719 TSC_hg19_v1_chr11_+_394242 DQ891692 DQ894875 CU674026	38966	+	X57352|IFITM3|10410|interferon induced transmembrane protein 3##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_178537|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##AB089939|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC131528|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC000081|PKP3|11187|plakophilin 3##NM_007183|PKP3|11187|plakophilin 3##AK025067|PKP3|11187|plakophilin 3##AK223511|PKP3|11187|plakophilin 3##Z98265|PKP3|11187|plakophilin 3##AF053719|PKP3|11187|plakophilin 3##DQ891692|PKP3|11187|plakophilin 3##DQ894875|PKP3|11187|plakophilin 3	0.0	0.0	
chr2	171011924	171012104	reg1004922.p2	7.213	+	TSC_hg19_v1_chr2_+_170683963 NM_172070	-328056	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	-330629	-	TSC_hg19_v1_chr2_+_170662051 M20328 M35261	-349870	+	AF369908 AF391554 AF391555 AF391556 AF391557 AF391558 NM_001083615 NM_001171642 NM_138995 BC136620 BC144307	22671	+	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	559844	+	TSC_hg19_v1_chr2_+_171571942 AB464708	559963	+	NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##M20328|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M35261|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##AF369908|MYO3B|140469|myosin IIIB##AF391554|MYO3B|140469|myosin IIIB##AF391555|MYO3B|140469|myosin IIIB##AF391556|MYO3B|140469|myosin IIIB##AF391557|MYO3B|140469|myosin IIIB##AF391558|MYO3B|140469|myosin IIIB##NM_001083615|MYO3B|140469|myosin IIIB##NM_001171642|MYO3B|140469|myosin IIIB##NM_138995|MYO3B|140469|myosin IIIB##BC136620|MYO3B|140469|myosin IIIB##BC144307|MYO3B|140469|myosin IIIB##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor	0.997328	0.0	denovo_WM_7:-48:0.901
chr17	37213425	37213562	reg1000505.p2	7.212	+	BC140879 BC140880 NM_001008777 AY700575	-89854	-	TSC_hg19_v1_chr17_+_37026351 X82456 BC012460 DQ891539 DQ894728 AB463833 CU675705 AK289847	-187097	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	-187179	+	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	94239	-	TSC_hg19_v1_chr17_-_37307863 BC036059	94354	-	TSC_hg19_v1_chr17_-_37307891 NM_020405	94402	-	BC140879|FBXO47|494188|F-box protein 47##BC140880|FBXO47|494188|F-box protein 47##NM_001008777|FBXO47|494188|F-box protein 47##AY700575|FBXO47|494188|F-box protein 47##X82456|LASP1|3927|LIM and SH3 protein 1##BC012460|LASP1|3927|LIM and SH3 protein 1##DQ891539|LASP1|3927|LIM and SH3 protein 1##DQ894728|LASP1|3927|LIM and SH3 protein 1##AK289847|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1##NM_020405|PLXDC1|57125|plexin domain containing 1	0.996171	0.0	
chr10	23603832	23603938	reg1004501.p1	7.211	+	AB463998 NM_178161	-122427	+	BC117471 BC130380 NM_012228 BC018030 TSC_hg19_v1_chr10_+_23384507 AF151889 BC066305 AF122004 EU446941	-219402	+	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	-386904	+	BC035732 NM_153714	29886	-	AB188491 NM_001145373 TSC_hg19_v1_chr10_+_23728216	124325	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	379792	+	NM_178161|PTF1A|256297|pancreas specific transcription factor, 1a##BC117471|MSRB2|22921|methionine sulfoxide reductase B2##BC130380|MSRB2|22921|methionine sulfoxide reductase B2##NM_012228|MSRB2|22921|methionine sulfoxide reductase B2##BC018030|MSRB2|22921|methionine sulfoxide reductase B2##AF151889|MSRB2|22921|methionine sulfoxide reductase B2##BC066305|MSRB2|22921|methionine sulfoxide reductase B2##AF122004|MSRB2|22921|methionine sulfoxide reductase B2##EU446941|MSRB2|22921|methionine sulfoxide reductase B2##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3##BC035732|C10orf67|256815|chromosome 10 open reading frame 67##NM_153714|C10orf67|256815|chromosome 10 open reading frame 67##AB188491|OTUD1|220213|OTU domain containing 1##NM_001145373|OTUD1|220213|OTU domain containing 1##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217	0.038577	0.941589	CTCF.p2:14:0.942
chr19	50316963	50317117	reg1005447.p1	7.211	+	CU678728 CU679609 TSC_hg19_v1_chr19_-_50316535 BC010092 AK057964 BC004445 BC016793 AK026341 AK315445 AK295072 NM_001171937 NM_025129	-557	-	TSC_hg19_v1_chr19_+_50304813 AK090661	-12233	+	TSC_hg19_v1_chr19_+_50270274 BC014214 AL136925 DQ892253 DQ895454 AB527855 CU676931	-46648	+	TSC_hg19_v1_chr19_+_50321555 NM_030973 AK055844 AK289460 AK307330 AK298897 AF261072 AJ617479 AL136746 BC065297 AY533507 EU392500 EU392501 EU392502 EU392503 EU392504 EU392505 EU392506 EU392507 EU392508 EU392509 EU392510 EU392511 EU392512 EU392513 EU392514 EU392515 EU392516 EU392517 EU392518 EU392519 EU832505 EU832586	4559	+	TSC_hg19_v1_chr19_+_50353947 AK057817 AY358168 AK294366	36977	+	TSC_hg19_v1_chr19_-_50354343 AK092213	37299	-	BC010092|FUZ|80199|fuzzy homolog (Drosophila)##AK057964|FUZ|80199|fuzzy homolog (Drosophila)##BC004445|FUZ|80199|fuzzy homolog (Drosophila)##BC016793|FUZ|80199|fuzzy homolog (Drosophila)##AK026341|FUZ|80199|fuzzy homolog (Drosophila)##AK315445|FUZ|80199|fuzzy homolog (Drosophila)##AK295072|FUZ|80199|fuzzy homolog (Drosophila)##NM_001171937|FUZ|80199|fuzzy homolog (Drosophila)##NM_025129|FUZ|80199|fuzzy homolog (Drosophila)##BC014214|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AL136925|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##DQ892253|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##DQ895454|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##NM_030973|MED25|81857|mediator complex subunit 25##AK055844|MED25|81857|mediator complex subunit 25##AK289460|MED25|81857|mediator complex subunit 25##AK307330|MED25|81857|mediator complex subunit 25##AK298897|MED25|81857|mediator complex subunit 25##AF261072|MED25|81857|mediator complex subunit 25##AJ617479|MED25|81857|mediator complex subunit 25##AL136746|MED25|81857|mediator complex subunit 25##BC065297|MED25|81857|mediator complex subunit 25##AY533507|MED25|81857|mediator complex subunit 25##EU392500|MED25|81857|mediator complex subunit 25##EU392501|MED25|81857|mediator complex subunit 25##EU392502|MED25|81857|mediator complex subunit 25##EU392503|MED25|81857|mediator complex subunit 25##EU392504|MED25|81857|mediator complex subunit 25##EU392505|MED25|81857|mediator complex subunit 25##EU392506|MED25|81857|mediator complex subunit 25##EU392507|MED25|81857|mediator complex subunit 25##EU392508|MED25|81857|mediator complex subunit 25##EU392509|MED25|81857|mediator complex subunit 25##EU392510|MED25|81857|mediator complex subunit 25##EU392511|MED25|81857|mediator complex subunit 25##EU392512|MED25|81857|mediator complex subunit 25##EU392513|MED25|81857|mediator complex subunit 25##EU392514|MED25|81857|mediator complex subunit 25##EU392515|MED25|81857|mediator complex subunit 25##EU392516|MED25|81857|mediator complex subunit 25##EU392517|MED25|81857|mediator complex subunit 25##EU392518|MED25|81857|mediator complex subunit 25##EU392519|MED25|81857|mediator complex subunit 25##EU832505|MED25|81857|mediator complex subunit 25##EU832586|MED25|81857|mediator complex subunit 25##AK057817|PTOV1|53635|prostate tumor overexpressed 1##AY358168|PTOV1|53635|prostate tumor overexpressed 1##AK294366|PTOV1|53635|prostate tumor overexpressed 1##AK092213|LOC100506033|100506033|uncharacterized LOC100506033	0.43997	0.0	denovo_WM_7:64:0.377
chr14	81588733	81588891	reg1004848.p1	7.210	+	AK303378 BC024205 NM_000369 NM_001018036 NM_001142626 M31774 BC108653 BC009237 M73747 M32215 BC063613 AB209207 BC120972 BC120973 BC127628 BC127629 BC141970 S49816 AB384880 AY429111 CU687778 S45272	-166946	+	BC045834 AK309833 TSC_hg19_v1_chr14_-_81408073	-180754	-	NM_152446	-182929	-	D14887 TSC_hg19_v1_chr14_-_81687285 NM_015859 BC050703	98468	-	D14886 NM_201595	98762	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	276014	-	BC024205|TSHR|7253|thyroid stimulating hormone receptor##NM_000369|TSHR|7253|thyroid stimulating hormone receptor##NM_001018036|TSHR|7253|thyroid stimulating hormone receptor##NM_001142626|TSHR|7253|thyroid stimulating hormone receptor##M31774|TSHR|7253|thyroid stimulating hormone receptor##BC108653|TSHR|7253|thyroid stimulating hormone receptor##BC009237|TSHR|7253|thyroid stimulating hormone receptor##M73747|TSHR|7253|thyroid stimulating hormone receptor##M32215|TSHR|7253|thyroid stimulating hormone receptor##BC063613|TSHR|7253|thyroid stimulating hormone receptor##AB209207|TSHR|7253|thyroid stimulating hormone receptor##BC120972|TSHR|7253|thyroid stimulating hormone receptor##BC120973|TSHR|7253|thyroid stimulating hormone receptor##BC127628|TSHR|7253|thyroid stimulating hormone receptor##BC127629|TSHR|7253|thyroid stimulating hormone receptor##BC141970|TSHR|7253|thyroid stimulating hormone receptor##S49816|TSHR|7253|thyroid stimulating hormone receptor##AY429111|TSHR|7253|thyroid stimulating hormone receptor##S45272|TSHR|7253|thyroid stimulating hormone receptor##BC045834|CEP128|145508|centrosomal protein 128kDa##AK309833|CEP128|145508|centrosomal protein 128kDa##NM_152446|CEP128|145508|centrosomal protein 128kDa##D14887|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_015859|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##BC050703|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##D14886|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_201595|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2	0.96503	0.0	denovo_WM_7:-10:0.440	denovo_WM_7:-12:0.306
chr17	4920467	4920597	reg1002074.p2	7.210	+	TSC_hg19_v1_chr17_+_4901226 NM_006612 AB014606 BC034993 AK307401	-19222	+	AY601906 AY601907 NM_001167985 NM_001167986 NM_001167987 NM_213726	-19628	-	AB020716 BC167148 BC167149 BC167151 BC167160 EU832136 EU832229 TSC_hg19_v1_chr17_-_4890947 AK302528 AL833974 BC142695 NM_001171166 NM_015099	-29580	-	AB362534 AK023570 AB362533 BC060810 NM_001104577 NM_017986	18180	-	TSC_hg19_v1_chr17_+_4981751 AK055288 NM_153018	61205	+	TSC_hg19_v1_chr17_+_4981774 AK290549 BC142962 BX647638	61253	+	NM_006612|KIF1C|10749|kinesin family member 1C##AB014606|KIF1C|10749|kinesin family member 1C##BC034993|KIF1C|10749|kinesin family member 1C##AK307401|KIF1C|10749|kinesin family member 1C##AY601906|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AY601907|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167985|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167986|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167987|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_213726|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AB020716|CAMTA2|23125|calmodulin binding transcription activator 2##BC167148|CAMTA2|23125|calmodulin binding transcription activator 2##BC167149|CAMTA2|23125|calmodulin binding transcription activator 2##BC167151|CAMTA2|23125|calmodulin binding transcription activator 2##BC167160|CAMTA2|23125|calmodulin binding transcription activator 2##EU832136|CAMTA2|23125|calmodulin binding transcription activator 2##EU832229|CAMTA2|23125|calmodulin binding transcription activator 2##AK302528|CAMTA2|23125|calmodulin binding transcription activator 2##AL833974|CAMTA2|23125|calmodulin binding transcription activator 2##BC142695|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171166|CAMTA2|23125|calmodulin binding transcription activator 2##NM_015099|CAMTA2|23125|calmodulin binding transcription activator 2##AB362534|GPR172B|55065|G protein-coupled receptor 172B##AK023570|GPR172B|55065|G protein-coupled receptor 172B##AB362533|GPR172B|55065|G protein-coupled receptor 172B##BC060810|GPR172B|55065|G protein-coupled receptor 172B##NM_001104577|GPR172B|55065|G protein-coupled receptor 172B##NM_017986|GPR172B|55065|G protein-coupled receptor 172B##AK055288|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_153018|ZFP3|124961|zinc finger protein 3 homolog (mouse)##AK290549|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BC142962|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BX647638|ZFP3|124961|zinc finger protein 3 homolog (mouse)	0.995772	0.0	
chr5	171678551	171678691	reg1004757.p2	7.210	+	NM_001171183	-57446	+	TSC_hg19_v1_chr5_-_171615363 NM_005990	-63249	-	TSC_hg19_v1_chr5_-_171615241 BC070077 AK313350	-63348	-	BC019910 TSC_hg19_v1_chr5_-_171710765 AK313274	32083	-	NM_152277 TSC_hg19_v1_chr5_-_171710808	32194	-	AB430862 DQ109556 BC038561 TSC_hg19_v1_chr5_-_171881387	202750	-	NM_001171183|EFCAB9|285588|EF-hand calcium binding domain 9##NM_005990|STK10|6793|serine/threonine kinase 10##BC070077|STK10|6793|serine/threonine kinase 10##AK313350|STK10|6793|serine/threonine kinase 10##BC019910|UBTD2|92181|ubiquitin domain containing 2##AK313274|UBTD2|92181|ubiquitin domain containing 2##NM_152277|UBTD2|92181|ubiquitin domain containing 2##AB430862|SH3PXD2B|285590|SH3 and PX domains 2B##DQ109556|SH3PXD2B|285590|SH3 and PX domains 2B##BC038561|SH3PXD2B|285590|SH3 and PX domains 2B	0.996644	0.0	denovo_WM_7:17:0.911
chr12	124172651	124172790	reg1005392.p2	7.209	+	TSC_hg19_v1_chr12_+_124155675 AK292153 NM_001143850 NM_024809 AK056924 DQ278870 BC009112 CU679251	-17004	+	TSC_hg19_v1_chr12_+_124118375 AK298128 AK313200 BC014570 NM_001516 BC016767 BC065250 AB463683 EU446895 CU688028 Z30093	-54361	+	TSC_hg19_v1_chr12_-_124118210 AK294815 NM_001414	-54461	-	TSC_hg19_v1_chr12_+_124196859 BC068531 NM_012463	24141	+	TSC_hg19_v1_chr12_+_124196899 BC022300	24176	+	TSC_hg19_v1_chr12_+_124196946 AK289391 AF112972 HQ258004	24306	+	AK292153|TCTN2|79867|tectonic family member 2##NM_001143850|TCTN2|79867|tectonic family member 2##NM_024809|TCTN2|79867|tectonic family member 2##AK056924|TCTN2|79867|tectonic family member 2##DQ278870|TCTN2|79867|tectonic family member 2##BC009112|TCTN2|79867|tectonic family member 2##AK298128|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##AK313200|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##BC014570|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##NM_001516|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##BC065250|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##EU446895|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##Z30093|GTF2H3|2967|general transcription factor IIH, polypeptide 3, 34kDa##AK294815|EIF2B1|1967|eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa##NM_001414|EIF2B1|1967|eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa##BC068531|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##NM_012463|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##BC022300|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##AK289391|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##AF112972|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##HQ258004|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2	0.991213	0.0	denovo_WM_7:47:0.228	denovo_WM_7:48:0.228	denovo_WM_7:49:0.228	denovo_WM_7:50:0.228
chr1	55750622	55750762	reg1003671.p1	7.209	+	TSC_hg19_v1_chr1_+_55681088 BC040313	-69608	+	TSC_hg19_v1_chr1_-_55681045 NM_015306	-69656	-	TSC_hg19_v1_chr1_+_55505220 AK075365	-245468	+	AF043329 TSC_hg19_v1_chr1_-_57045054 BC009196	1294327	-	AF017786 U79294 AF480883 TSC_hg19_v1_chr1_-_57045132	1294438	-	AK312439 TSC_hg19_v1_chr1_-_57045216	1294525	-	BC040313|LOC100507634|100507634|uncharacterized LOC100507634##NM_015306|USP24|23358|ubiquitin specific peptidase 24##AK075365|PCSK9|255738|proprotein convertase subtilisin/kexin type 9##AF043329|PPAP2B|8613|phosphatidic acid phosphatase type 2B##BC009196|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF017786|PPAP2B|8613|phosphatidic acid phosphatase type 2B##U79294|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF480883|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK312439|PPAP2B|8613|phosphatidic acid phosphatase type 2B	0.998173	0.0	
chr16	16127379	16127550	reg1005086.p1	7.209	+	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	-84100	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-144979	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	-145011	-	TSC_hg19_v1_chr16_+_16146613 HQ917065	19154	+	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	189856	-	TSC_hg19_v1_chr16_+_16326401 NM_001004067	198933	+	L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AL832498|FOPNL|123811|FGFR1OP N-terminal like##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001004067|NOMO3|408050|NODAL modulator 3	0.990574	0.019272	denovo_WM_7:50:0.991
chr20	52560423	52560562	reg1004453.p1	7.209	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-349693	-	AF041259 NM_006526	-360857	-	AK302570 NM_001193421	-758671	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	126570	-	AK315220 NM_003657	126811	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	230028	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.984365	0.735269	denovo_WM_7:16:0.797	CTCF.p2:-31:0.735
chr15	43622680	43622838	reg1004443.p2	7.208	+	CU677535 TSC_hg19_v1_chr15_-_43622812 AB011119 AK292587 AK300820 BC015949 NM_014793	-6	-	AF363393 NM_052955	-28307	-	AF035960 AF035961 BC119009 BC122859 NM_004245 NM_201631	-63705	-	AK298870 NM_001012969 NM_001159280 BC075857	138	+	AF525399 BC109270 BC109271 AB527871 AK122788 NM_152455 BC043612	39424	-	TSC_hg19_v1_chr15_+_43663298 AK027703 BC012801 NM_014444 BC009870	40544	+	AK292587|LCMT2|9836|leucine carboxyl methyltransferase 2##AK300820|LCMT2|9836|leucine carboxyl methyltransferase 2##BC015949|LCMT2|9836|leucine carboxyl methyltransferase 2##NM_014793|LCMT2|9836|leucine carboxyl methyltransferase 2##AF363393|TGM7|116179|transglutaminase 7##NM_052955|TGM7|116179|transglutaminase 7##AF035960|TGM5|9333|transglutaminase 5##AF035961|TGM5|9333|transglutaminase 5##BC119009|TGM5|9333|transglutaminase 5##BC122859|TGM5|9333|transglutaminase 5##NM_004245|TGM5|9333|transglutaminase 5##NM_201631|TGM5|9333|transglutaminase 5##AK298870|ADAL|161823|adenosine deaminase-like##NM_001012969|ADAL|161823|adenosine deaminase-like##NM_001159280|ADAL|161823|adenosine deaminase-like##BC075857|ADAL|161823|adenosine deaminase-like##AF525399|ZSCAN29|146050|zinc finger and SCAN domain containing 29##BC109270|ZSCAN29|146050|zinc finger and SCAN domain containing 29##BC109271|ZSCAN29|146050|zinc finger and SCAN domain containing 29##AK122788|ZSCAN29|146050|zinc finger and SCAN domain containing 29##NM_152455|ZSCAN29|146050|zinc finger and SCAN domain containing 29##BC043612|ZSCAN29|146050|zinc finger and SCAN domain containing 29##AK027703|TUBGCP4|27229|tubulin, gamma complex associated protein 4##BC012801|TUBGCP4|27229|tubulin, gamma complex associated protein 4##NM_014444|TUBGCP4|27229|tubulin, gamma complex associated protein 4##BC009870|TUBGCP4|27229|tubulin, gamma complex associated protein 4	0.0	0.0	
chr11	696527	696667	reg1005111.p1	7.207	+	NM_001042463 NM_174940 BC008671 TSC_hg19_v1_chr11_+_695815 AK302585 AK124309	-875	+	AF049460 AK291383 TSC_hg19_v1_chr11_-_695598 NM_021008	-1027	-	BC042135 BC053322 FJ985253 TSC_hg19_v1_chr11_-_695223	-1387	-	TSC_hg19_v1_chr11_+_706230 NM_022772 AK025588 AK025824 AK225311 AK294041 AK222903	9572	+	TSC_hg19_v1_chr11_+_706613 BC080636	10028	+	AK027765 TSC_hg19_v1_chr11_+_722322	25705	+	NM_001042463|TMEM80|283232|transmembrane protein 80##NM_174940|TMEM80|283232|transmembrane protein 80##BC008671|TMEM80|283232|transmembrane protein 80##AK302585|TMEM80|283232|transmembrane protein 80##AK124309|TMEM80|283232|transmembrane protein 80##AF049460|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AK291383|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##NM_021008|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##BC042135|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##BC053322|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##FJ985253|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##NM_022772|EPS8L2|64787|EPS8-like 2##AK025588|EPS8L2|64787|EPS8-like 2##AK025824|EPS8L2|64787|EPS8-like 2##AK225311|EPS8L2|64787|EPS8-like 2##AK294041|EPS8L2|64787|EPS8-like 2##AK222903|EPS8L2|64787|EPS8-like 2##BC080636|EPS8L2|64787|EPS8-like 2##AK027765|EPS8L2|64787|EPS8-like 2	0.0	0.0	
chr17	59349934	59350114	reg1002987.p1	7.207	+	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	-594811	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-672335	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-672480	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	127212	+	TSC_hg19_v1_chr17_+_59477477 U28049	127472	+	TSC_hg19_v1_chr17_+_59477713 AL832900 AB209378	127693	+	NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2##AL832900|TBX2|6909|T-box 2##AB209378|TBX2|6909|T-box 2	1.995564	0.0	denovo_WM_7:-2:0.561	denovo_WM_7:-3:0.281	denovo_WM_7:-17:0.332	denovo_WM_7:-18:0.613
chr19	58428292	58428472	reg1004833.p2	7.207	+	TSC_hg19_v1_chr19_-_58427961 BC025783 AK293789 BC103757 NM_152475	-410	-	BC056684 AF086563 AK022663 TSC_hg19_v1_chr19_-_58400401 AK300483 NM_001144989	-28018	-	TSC_hg19_v1_chr19_+_58361226 AK027616 BC126237 BC126239 BC144112 BC144113 AB464407	-67070	+	AK056113 AY695825 NM_133460 AK304632 AK293723	18364	-	TSC_hg19_v1_chr19_-_58459075 BC001438 AK314094 NM_005773	30680	-	BC033933 NM_152474	57519	-	BC025783|ZNF417|147687|zinc finger protein 417##AK293789|ZNF417|147687|zinc finger protein 417##BC103757|ZNF417|147687|zinc finger protein 417##NM_152475|ZNF417|147687|zinc finger protein 417##BC056684|ZNF814|730051|zinc finger protein 814##AF086563|ZNF814|730051|zinc finger protein 814##AK022663|ZNF814|730051|zinc finger protein 814##AK300483|ZNF814|730051|zinc finger protein 814##NM_001144989|ZNF814|730051|zinc finger protein 814##AK027616|ZNF587|84914|zinc finger protein 587##BC126237|ZNF587|84914|zinc finger protein 587##BC126239|ZNF587|84914|zinc finger protein 587##BC144112|ZNF587|84914|zinc finger protein 587##BC144113|ZNF587|84914|zinc finger protein 587##AK056113|ZNF418|147686|zinc finger protein 418##AY695825|ZNF418|147686|zinc finger protein 418##NM_133460|ZNF418|147686|zinc finger protein 418##AK304632|ZNF418|147686|zinc finger protein 418##AK293723|ZNF418|147686|zinc finger protein 418##BC001438|ZNF256|10172|zinc finger protein 256##AK314094|ZNF256|10172|zinc finger protein 256##NM_005773|ZNF256|10172|zinc finger protein 256##BC033933|C19orf18|147685|chromosome 19 open reading frame 18##NM_152474|C19orf18|147685|chromosome 19 open reading frame 18	1.986082	0.0	denovo_WM_7:-69:0.491	denovo_WM_7:-70:0.286	denovo_WM_7:-71:0.214
chr20	50211588	50211742	reg1004973.p2	7.207	+	AK304147 AK226146 EU887575 EU887579 TSC_hg19_v1_chr20_-_50179379	-32281	-	EU887574 EU887577 NM_001136021	-32498	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	-52390	-	BC110591 BC110592 BC063701 TSC_hg19_v1_chr20_-_50314160	102413	-	TSC_hg19_v1_chr20_-_50384875 AB385363 AB014511 AK299064	173213	-	TSC_hg19_v1_chr20_-_50384925 NM_006045	173263	-	AK304147|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##AK226146|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887575|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887579|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC110591|ATP9A|10079|ATPase, class II, type 9A##BC110592|ATP9A|10079|ATPase, class II, type 9A##BC063701|ATP9A|10079|ATPase, class II, type 9A##AB014511|ATP9A|10079|ATPase, class II, type 9A##AK299064|ATP9A|10079|ATPase, class II, type 9A##NM_006045|ATP9A|10079|ATPase, class II, type 9A	0.0	0.055778	
chr21	30849151	30849331	reg1000163.p2	7.207	+	AF026199 NM_206866	-177505	+	TSC_hg19_v1_chr21_+_30671242 AK313791 BC063307	-178000	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	-178021	+	L19058 NM_000830 NM_175611 AK296404 BC028238	463048	-	BC101503 BC101505 NM_012131 AY358094	689765	-	AB590283 CU676754 DQ892002 DQ895192 BC058004 AY358707 BC020866 AK223512 AK022269 NM_199328	739114	-	AF026199|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_206866|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AK313791|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##BC063307|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##L19058|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_000830|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##NM_175611|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##AK296404|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC028238|GRIK1|2897|glutamate receptor, ionotropic, kainate 1##BC101503|CLDN17|26285|claudin 17##BC101505|CLDN17|26285|claudin 17##NM_012131|CLDN17|26285|claudin 17##AY358094|CLDN17|26285|claudin 17##DQ892002|CLDN8|9073|claudin 8##DQ895192|CLDN8|9073|claudin 8##BC058004|CLDN8|9073|claudin 8##AY358707|CLDN8|9073|claudin 8##BC020866|CLDN8|9073|claudin 8##AK223512|CLDN8|9073|claudin 8##AK022269|CLDN8|9073|claudin 8##NM_199328|CLDN8|9073|claudin 8	0.746752	0.0	denovo_WM_7:-13:0.747
chr2	129079489	129079645	reg1004845.p1	7.206	+	AK304326 BC096239 BC096240 BC099638 BC099639 NM_004807 AB006179 TSC_hg19_v1_chr2_-_129076443	-3267	-	AK074376 TSC_hg19_v1_chr2_+_128928049	-151520	+	TSC_hg19_v1_chr2_+_128848891 AF227905	-230706	+	NM_032144 AL136727	1657668	+	EF523384 NM_001099771 TSC_hg19_v1_chr2_-_130886919	1807291	-	CU688330 AK297246 AK057609 NM_207310 BC067771 AK302804	1823044	-	BC096239|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC096240|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099638|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099639|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##NM_004807|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AB006179|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AK074376|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##AF227905|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##NM_032144|RAB6C|84084|RAB6C, member RAS oncogene family##AL136727|RAB6C|84084|RAB6C, member RAS oncogene family##EF523384|POTEF|728378|POTE ankyrin domain family, member F##NM_001099771|POTEF|728378|POTE ankyrin domain family, member F##AK297246|CCDC74B|91409|coiled-coil domain containing 74B##AK057609|CCDC74B|91409|coiled-coil domain containing 74B##NM_207310|CCDC74B|91409|coiled-coil domain containing 74B##BC067771|CCDC74B|91409|coiled-coil domain containing 74B##AK302804|CCDC74B|91409|coiled-coil domain containing 74B	0.0	0.342954	CTCF.p2:-37:0.331
chr4	131495115	131495267	reg1005351.p2	7.205	+	NM_001099783	-1477910	+	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	-1480324	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	-1480601	-	TSC_hg19_v1_chr4_+_134070448 AB037821 AY013874 NM_020815 NM_032961	2575265	+	AK024636 TSC_hg19_v1_chr4_+_134073255 AL157470	2578092	+	NM_001114734 TSC_hg19_v1_chr4_-_135122935	3627727	-	NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##AB037821|PCDH10|57575|protocadherin 10##AY013874|PCDH10|57575|protocadherin 10##NM_020815|PCDH10|57575|protocadherin 10##NM_032961|PCDH10|57575|protocadherin 10##AK024636|PCDH10|57575|protocadherin 10##AL157470|PCDH10|57575|protocadherin 10##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like	1.906409	0.0	denovo_WM_7:-24:0.712	denovo_WM_7:42:0.316	denovo_WM_7:45:0.661
chr6_ssto_hap7	2507026	2507146	reg1005567.p3	7.204	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.994122	0.0	
chr16	452034	452214	reg1004794.p1	7.203	+	TSC_hg19_v1_chr16_+_451944 AJ293009 CU679809	-177	+	TSC_hg19_v1_chr16_+_451884 AK055839 NM_020664 BC010740 AK128012 AK225961 BC030226	-240	+	TSC_hg19_v1_chr16_+_447198 BC017067 NM_005009 BC004880 Y07604 AB528678 BT019438	-4913	+	TSC_hg19_v1_chr16_+_475616 AB014565 AF395731	23491	+	TSC_hg19_v1_chr16_+_475648 BC051360 NM_014700	23528	+	TSC_hg19_v1_chr16_+_524843 AK303061 NM_001142272	72725	+	AJ293009|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK055839|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##NM_020664|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC010740|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK128012|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK225961|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC030226|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC017067|NME4|4833|non-metastatic cells 4, protein expressed in##NM_005009|NME4|4833|non-metastatic cells 4, protein expressed in##BC004880|NME4|4833|non-metastatic cells 4, protein expressed in##Y07604|NME4|4833|non-metastatic cells 4, protein expressed in##BT019438|NME4|4833|non-metastatic cells 4, protein expressed in##AB014565|RAB11FIP3|9727|RAB11 family interacting protein 3 (class II)##AF395731|RAB11FIP3|9727|RAB11 family interacting protein 3 (class II)##BC051360|RAB11FIP3|9727|RAB11 family interacting protein 3 (class II)##NM_014700|RAB11FIP3|9727|RAB11 family interacting protein 3 (class II)##AK303061|RAB11FIP3|9727|RAB11 family interacting protein 3 (class II)##NM_001142272|RAB11FIP3|9727|RAB11 family interacting protein 3 (class II)	1.619008	0.190523	denovo_WM_7:43:0.508	denovo_WM_7:61:0.727
chr1	24233359	24233491	reg1004098.p2	7.200	+	CU675950 TSC_hg19_v1_chr1_-_24194781 M29877 AB074175 AK092914 AK095443 AK095455 AK225468 AK301302 AK310143 AK314649 AX747804 BC017338 AK295535 NM_000147	-38616	-	TSC_hg19_v1_chr1_-_24151934 NM_000191 NM_001166059	-81477	-	TSC_hg19_v1_chr1_-_24151929 BC021145 BT009792 CR456884 CU679747 DQ892083 DQ895276 L07033 BC010570 AK309129 AK300733 AK313869	-81538	-	BC069722 NM_001841 X74328 FJ357036	6379	-	NM_017761 TSC_hg19_v1_chr1_+_24286310	52880	+	TSC_hg19_v1_chr1_+_24286317 AF151042 AK300522 BC068475 AK311305 BC001959 BC085018 BC078177 AF374386	52921	+	M29877|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AB074175|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK092914|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095443|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095455|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK225468|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK301302|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK310143|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK314649|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC017338|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK295535|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000147|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000191|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_001166059|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC021145|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BT009792|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##CR456884|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ892083|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ895276|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##L07033|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC010570|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK309129|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK300733|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK313869|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC069722|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_001841|CNR2|1269|cannabinoid receptor 2 (macrophage)##X74328|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_017761|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF151042|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC068475|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AK311305|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC001959|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC085018|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC078177|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF374386|PNRC2|55629|proline-rich nuclear receptor coactivator 2	0.960568	0.0	denovo_WM_7:-35:0.648
chr4	57332630	57332755	reg1004370.p2	7.198	+	TSC_hg19_v1_chr4_+_57302451 X53793 BT006988 CU679667 DQ890605 DQ893056 DQ893776 DQ896305 AK308527	-30155	+	TSC_hg19_v1_chr4_+_57302425 D28431	-30274	+	NM_001079524 NM_001079525 TSC_hg19_v1_chr4_+_57302303 CR749824 BC019255	-30387	+	TSC_hg19_v1_chr4_+_57333762 NM_006947 BC017057 BC056901 BC105583	1069	+	TSC_hg19_v1_chr4_+_57333798 BC040134 BX537991 AF038851 BC046143 BC065018 AF069765 BC032609 AK225430 AK307397 AB590681 AF077019	1098	+	AY439003 NM_206919	38682	+	X53793|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BT006988|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ890605|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893056|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893776|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ896305|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK308527|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##D28431|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079524|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079525|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##CR749824|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC019255|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_006947|SRP72|6731|signal recognition particle 72kDa##BC017057|SRP72|6731|signal recognition particle 72kDa##BC056901|SRP72|6731|signal recognition particle 72kDa##BC105583|SRP72|6731|signal recognition particle 72kDa##BC040134|SRP72|6731|signal recognition particle 72kDa##BX537991|SRP72|6731|signal recognition particle 72kDa##AF038851|SRP72|6731|signal recognition particle 72kDa##BC046143|SRP72|6731|signal recognition particle 72kDa##BC065018|SRP72|6731|signal recognition particle 72kDa##AF069765|SRP72|6731|signal recognition particle 72kDa##BC032609|SRP72|6731|signal recognition particle 72kDa##AK225430|SRP72|6731|signal recognition particle 72kDa##AK307397|SRP72|6731|signal recognition particle 72kDa##AF077019|SRP72|6731|signal recognition particle 72kDa##AY439003|ARL9|132946|ADP-ribosylation factor-like 9##NM_206919|ARL9|132946|ADP-ribosylation factor-like 9	1.985105	0.0	denovo_WM_7:-23:0.978	denovo_WM_7:-38:0.977
chr5	140797079	140797206	reg1004852.p1	7.198	+	TSC_hg19_v1_chr5_+_140792580 BC014509 BC093873 BC093875 AF152319 AF152503 NM_018913 NM_032090	-4518	+	AF152335 AF152522 NM_018926 NM_032100	-9373	+	TSC_hg19_v1_chr5_+_140782367 BC132769 AF152329 AF152516 NM_018921 NM_032089	-14699	+	TSC_hg19_v1_chr5_+_140797217 NM_032101	74	+	TSC_hg19_v1_chr5_+_140797246 NM_018927	109	+	TSC_hg19_v1_chr5_+_140797279 AF152336 AF152523	206	+	BC014509|PCDHGA10|56106|protocadherin gamma subfamily A, 10##BC093873|PCDHGA10|56106|protocadherin gamma subfamily A, 10##BC093875|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152319|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152503|PCDHGA10|56106|protocadherin gamma subfamily A, 10##NM_018913|PCDHGA10|56106|protocadherin gamma subfamily A, 10##NM_032090|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152335|PCDHGB6|56100|protocadherin gamma subfamily B, 6##AF152522|PCDHGB6|56100|protocadherin gamma subfamily B, 6##NM_018926|PCDHGB6|56100|protocadherin gamma subfamily B, 6##NM_032100|PCDHGB6|56100|protocadherin gamma subfamily B, 6##BC132769|PCDHGA9|56107|protocadherin gamma subfamily A, 9##AF152329|PCDHGA9|56107|protocadherin gamma subfamily A, 9##AF152516|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_018921|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_032089|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_032101|PCDHGB7|56099|protocadherin gamma subfamily B, 7##NM_018927|PCDHGB7|56099|protocadherin gamma subfamily B, 7##AF152336|PCDHGB7|56099|protocadherin gamma subfamily B, 7##AF152523|PCDHGB7|56099|protocadherin gamma subfamily B, 7	0.0	0.0	
chr14	102237437	102237545	reg1005388.p2	7.197	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-9305	+	BX161470 NM_001362 S79854 TSC_hg19_v1_chr14_+_102027831 AK292310 BC017717	-209728	+	BC150617 NM_001134888	-886308	-	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	38692	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	38818	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	193337	+	NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BX161470|DIO3|1735|deiodinase, iodothyronine, type III##NM_001362|DIO3|1735|deiodinase, iodothyronine, type III##S79854|DIO3|1735|deiodinase, iodothyronine, type III##BC017717|DIO3|1735|deiodinase, iodothyronine, type III##BC150617|RTL1|388015|retrotransposon-like 1##NM_001134888|RTL1|388015|retrotransposon-like 1##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1	0.0	0.0	
chr8	109260908	109261039	reg1005076.p2	7.197	+	AB527268 CR457029 CR542275 CU674376 CU677689 CU678957 DQ892278 DQ895478 BC000734 TSC_hg19_v1_chr8_-_109260938 U54562 U85947	-39	-	TSC_hg19_v1_chr8_-_109095846 AK123023 NM_178565	-165099	-	U83508 BC152411 BC152419 D13628 AY055342 NM_001146 NM_001199859 BX648814	-750785	-	TSC_hg19_v1_chr8_-_109260947 BC017887 AK313186 BC005944 BC016706 BC021679 U94175 U62962 BC008419 NM_001568 AK310902	12	-	TSC_hg19_v1_chr8_+_109455865 BC021667 NM_014673 AK222615 BC007027 BC020753	194879	+	TSC_hg19_v1_chr8_+_109455874 AK290974 D14659 AB384437 CR457402 CU676696 CU692380 HQ447150	194907	+	CR457029|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##CR542275|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##DQ892278|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##DQ895478|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC000734|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##U54562|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##U85947|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##AK123023|RSPO2|340419|R-spondin 2##NM_178565|RSPO2|340419|R-spondin 2##U83508|ANGPT1|284|angiopoietin 1##BC152411|ANGPT1|284|angiopoietin 1##BC152419|ANGPT1|284|angiopoietin 1##D13628|ANGPT1|284|angiopoietin 1##AY055342|ANGPT1|284|angiopoietin 1##NM_001146|ANGPT1|284|angiopoietin 1##NM_001199859|ANGPT1|284|angiopoietin 1##BX648814|ANGPT1|284|angiopoietin 1##BC017887|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##AK313186|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC005944|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC016706|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC021679|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##U94175|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##U62962|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC008419|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##NM_001568|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##AK310902|EIF3E|3646|eukaryotic translation initiation factor 3, subunit E##BC021667|TTC35|9694|tetratricopeptide repeat domain 35##NM_014673|TTC35|9694|tetratricopeptide repeat domain 35##AK222615|TTC35|9694|tetratricopeptide repeat domain 35##BC007027|TTC35|9694|tetratricopeptide repeat domain 35##BC020753|TTC35|9694|tetratricopeptide repeat domain 35##AK290974|TTC35|9694|tetratricopeptide repeat domain 35##D14659|TTC35|9694|tetratricopeptide repeat domain 35##CR457402|TTC35|9694|tetratricopeptide repeat domain 35##HQ447150|TTC35|9694|tetratricopeptide repeat domain 35	0.0	0.0	
chr22	38793482	38793623	reg1004523.p1	7.196	+	AB024597 NM_001894	-79464	-	TSC_hg19_v1_chr22_-_38713439 NM_152221	-80138	-	BC006490 AB091043 TSC_hg19_v1_chr22_-_38713340 AK223498	-80261	-	TSC_hg19_v1_chr22_-_38794883 AK307225 AK310303	1316	-	NM_004981 S72503 U07364	46480	-	CR456507 BC039618 U24056 NM_152868 BC032562	57556	-	AB024597|CSNK1E|1454|casein kinase 1, epsilon##NM_001894|CSNK1E|1454|casein kinase 1, epsilon##NM_152221|CSNK1E|1454|casein kinase 1, epsilon##BC006490|CSNK1E|1454|casein kinase 1, epsilon##AB091043|CSNK1E|1454|casein kinase 1, epsilon##AK223498|CSNK1E|1454|casein kinase 1, epsilon##AK307225|LOC400927|400927|TPTE and PTEN homologous inositol lipid phosphatase pseudogene##NM_004981|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##S72503|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U07364|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##CR456507|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC039618|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U24056|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##NM_152868|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC032562|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4	0.989596	0.0	denovo_WM_7:-12:0.551
chr13	100018327	100018507	reg1005512.p1	7.195	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-58719	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-107803	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-165298	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	135283	+	TSC_hg19_v1_chr13_+_100153777 BC130293	135365	+	BC041830 TSC_hg19_v1_chr13_+_100229390	210960	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.0	0.0	
chr14	34544269	34544414	reg1004177.p1	7.195	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-124192	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1135851	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1745805	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	387146	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	464544	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	555014	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	1.996961	0.0	denovo_WM_7:34:0.444	denovo_WM_7:35:0.296	denovo_WM_7:50:0.323	denovo_WM_7:51:0.471
chr10	24941290	24941449	reg1004908.p1	7.194	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-185900	+	TSC_hg19_v1_chr10_+_24755441 AK300422	-185925	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-443275	+	AK307604 TSC_hg19_v1_chr10_-_25012174	70804	-	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	71237	-	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	300163	-	BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1	0.0	0.0	
chr4	39354869	39355045	reg1001903.p1	7.193	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	-170862	+	AK289785 NM_015990 NM_199039	-291106	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-308519	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	12995	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	53527	+	TSC_hg19_v1_chr4_+_39408557 BC104871 BC113653 BC143575	53592	+	AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta##BC104871|KLB|152831|klotho beta##BC113653|KLB|152831|klotho beta##BC143575|KLB|152831|klotho beta	1.588133	0.0	denovo_WM_7:68:0.368	denovo_WM_7:69:0.226	denovo_WM_7:84:0.280
chr12	90150515	90150668	reg1004055.p1	7.192	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-47046	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-47904	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-100740	-	BC026075 BC024183 BC027600 BC034491 NM_152638	1198360	-	U59111 TSC_hg19_v1_chr12_-_91398750	1248156	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	1248188	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.0	0.0	
chr4	114992270	114992398	reg1005408.p1	7.192	+	AK307532 TSC_hg19_v1_chr4_-_114900840 AY358647 NM_024590	-91495	-	TSC_hg19_v1_chr4_-_114682923 NM_001221 NM_172114 NM_172115 NM_172127 NM_172128 NM_172129	-309364	-	TSC_hg19_v1_chr4_-_114682619 AK055642 AB209288	-309678	-	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	527249	+	NM_003360 U30930	551188	+	BC113075 BC012326 AK289670 AB036429 NM_022569	1042647	-	AK307532|ARSJ|79642|arylsulfatase family, member J##AY358647|ARSJ|79642|arylsulfatase family, member J##NM_024590|ARSJ|79642|arylsulfatase family, member J##NM_001221|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172114|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172115|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172127|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172128|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172129|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK055642|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AB209288|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	0.742921	0.30036	CTCF.p2:23:0.300	denovo_WM_7:-44:0.519
chr5	68728825	68728990	reg1005410.p4	7.192	+	NM_001038603 NM_001244734 AK055094 BC033689 DQ682656 DQ682657 AK292962	-17961	+	AF085736 NM_133339	-61627	+	NM_133340 NM_133341 AJ001642 AJ004977 AF098533 AF098534	-62019	+	NM_002538 U53823	59211	+	U49184 TSC_hg19_v1_chr5_+_68788631 NM_001205254 AK313501 BC029886 AK290697	59640	+	NM_001205255 FJ786083 FJ786084 GQ225096 GQ225097 GQ225098 GQ402517 AB587564 DQ892423 DQ895637 AB451306 AB451437	71130	+	NM_001038603|MARVELD2|153562|MARVEL domain containing 2##NM_001244734|MARVELD2|153562|MARVEL domain containing 2##AK055094|MARVELD2|153562|MARVEL domain containing 2##BC033689|MARVELD2|153562|MARVEL domain containing 2##DQ682656|MARVELD2|153562|MARVEL domain containing 2##DQ682657|MARVELD2|153562|MARVEL domain containing 2##AK292962|MARVELD2|153562|MARVEL domain containing 2##AF085736|RAD17|5884|RAD17 homolog (S. pombe)##NM_133339|RAD17|5884|RAD17 homolog (S. pombe)##NM_133340|RAD17|5884|RAD17 homolog (S. pombe)##NM_133341|RAD17|5884|RAD17 homolog (S. pombe)##AJ001642|RAD17|5884|RAD17 homolog (S. pombe)##AJ004977|RAD17|5884|RAD17 homolog (S. pombe)##AF098533|RAD17|5884|RAD17 homolog (S. pombe)##AF098534|RAD17|5884|RAD17 homolog (S. pombe)##NM_002538|OCLN|100506658|occludin##U53823|OCLN|100506658|occludin##U49184|OCLN|100506658|occludin##NM_001205254|OCLN|100506658|occludin##AK313501|OCLN|100506658|occludin##BC029886|OCLN|100506658|occludin##AK290697|OCLN|100506658|occludin##NM_001205255|OCLN|100506658|occludin##FJ786083|OCLN|100506658|occludin##FJ786084|OCLN|100506658|occludin##GQ225096|OCLN|100506658|occludin##GQ225097|OCLN|100506658|occludin##GQ225098|OCLN|100506658|occludin##GQ402517|OCLN|100506658|occludin##DQ892423|OCLN|100506658|occludin##DQ895637|OCLN|100506658|occludin##AB451306|OCLN|100506658|occludin##AB451437|OCLN|100506658|occludin	0.990725	0.0	
chr8	11657778	11657910	reg1004489.p1	7.192	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	-30576	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	-96124	+	S76617 NM_001715 BC018703 BC004473 BC038555	-306251	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	2340	+	TSC_hg19_v1_chr8_+_11660249 AK296043 AK315993 AK311246 X69141 AK301617	2394	+	BC003573 BC009251 TSC_hg19_v1_chr8_+_11660279 S76822	2437	+	NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK296043|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK315993|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK311246|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##X69141|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK301617|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##BC003573|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##BC009251|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##S76822|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	1.991775	0.0	denovo_WM_7:-49:0.442	denovo_WM_7:-50:0.295	denovo_WM_7:-65:0.323	denovo_WM_7:-66:0.470
chr12	8608399	8608571	reg1004591.p1	7.191	+	BC042608 AK001270 NM_018088	-228282	-	TSC_hg19_v1_chr12_+_8332811 AK096301 BC048994 AK311411 BC034777	-275659	+	NM_001004328	-283336	+	AK308011 AY321309 NM_001007033 AY365135 BC132933 BC132935	117	+	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	57746	+	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	84989	-	BC042608|FAM90A1|55138|family with sequence similarity 90, member A1##AK001270|FAM90A1|55138|family with sequence similarity 90, member A1##NM_018088|FAM90A1|55138|family with sequence similarity 90, member A1##AK096301|FAM66C|440078|family with sequence similarity 66, member C##BC048994|FAM66C|440078|family with sequence similarity 66, member C##BC034777|FAM66C|440078|family with sequence similarity 66, member C##NM_001004328|ZNF705A|440077|zinc finger protein 705A##AK308011|CLEC6A|93978|C-type lectin domain family 6, member A##AY321309|CLEC6A|93978|C-type lectin domain family 6, member A##NM_001007033|CLEC6A|93978|C-type lectin domain family 6, member A##AY365135|CLEC6A|93978|C-type lectin domain family 6, member A##BC132933|CLEC6A|93978|C-type lectin domain family 6, member A##BC132935|CLEC6A|93978|C-type lectin domain family 6, member A##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E	0.969584	0.0	denovo_WM_7:0:0.830
chr9	37472145	37472310	reg1005010.p1	7.191	+	TSC_hg19_v1_chr9_-_37465448 AK292404	-6786	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	-6832	-	BC010007 TSC_hg19_v1_chr9_-_37465267	-6967	-	TSC_hg19_v1_chr9_+_37485944 BC014331 AK023452 AK302345 AK303167 NM_022490 AK301347 AK024032 AK225050 BC017766 BC001337 CR457313 AK091294 AX746899	13803	+	AF174598 AF176705 NM_012166 TSC_hg19_v1_chr9_-_37576280	104038	-	CR627326 AB435233 TSC_hg19_v1_chr9_-_37592574 BC034247	120292	-	AK292404|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##BC014331|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK023452|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK302345|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK303167|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##NM_022490|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK301347|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK024032|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK225050|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC017766|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC001337|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##CR457313|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK091294|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AF174598|FBXO10|26267|F-box protein 10##AF176705|FBXO10|26267|F-box protein 10##NM_012166|FBXO10|26267|F-box protein 10##AB435233|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC034247|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)	2.835655	0.0	denovo_WM_7:-1:0.493	denovo_WM_7:1:0.246	denovo_WM_7:-23:0.723	denovo_WM_7:-25:0.231	denovo_WM_7:97:0.841
chr1	28776706	28776868	reg1004338.p2	7.190	+	NM_023923 BC021247	-12117	+	TSC_hg19_v1_chr1_+_28696251 NM_001048183 CR749449 AK025436 BC029266 BC016152 BC068508	-80562	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	-121240	+	NM_001048199 TSC_hg19_v1_chr1_+_28832500	55711	+	TSC_hg19_v1_chr1_+_28832555 AJ006834 AJ006835 X06130 BC012122 BC065008 BC007300 BC036903 BC006790 BC017334	55795	+	X12654 TSC_hg19_v1_chr1_+_28844754 NM_001048194 NM_001048195 NM_001269	67916	+	NM_023923|PHACTR4|65979|phosphatase and actin regulator 4##BC021247|PHACTR4|65979|phosphatase and actin regulator 4##NM_001048183|PHACTR4|65979|phosphatase and actin regulator 4##CR749449|PHACTR4|65979|phosphatase and actin regulator 4##AK025436|PHACTR4|65979|phosphatase and actin regulator 4##BC029266|PHACTR4|65979|phosphatase and actin regulator 4##BC016152|PHACTR4|65979|phosphatase and actin regulator 4##BC068508|PHACTR4|65979|phosphatase and actin regulator 4##NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18##NM_001048199|RCC1|1104|regulator of chromosome condensation 1##AJ006834|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##AJ006835|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC012122|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC065008|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC006790|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC017334|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##X12654|RCC1|1104|regulator of chromosome condensation 1##NM_001048194|RCC1|1104|regulator of chromosome condensation 1##NM_001048195|RCC1|1104|regulator of chromosome condensation 1##NM_001269|RCC1|1104|regulator of chromosome condensation 1	0.992266	0.0	denovo_WM_7:20:0.789
chr16	34835175	34835327	reg1005340.p2	7.190	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-1573118	+	AL133588 NM_016212	-1573737	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-1629653	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	11820021	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	11820055	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	11887811	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	2.016008	0.0	denovo_WM_7:-82:0.579
chr1	19532048	19532190	reg1004253.p1	7.189	+	TSC_hg19_v1_chr1_-_19282773 NM_001136265	-249320	-	AB587364 DQ893505 DQ896489 TSC_hg19_v1_chr1_-_19229045 FJ462711 BC007581 BC023600 AK222486 U24266 U24267 AK289972 NM_003748 NM_170726	-302965	-	AK294552 NM_001161504	-314735	-	AF348492 NM_020765 TSC_hg19_v1_chr1_-_19536751 BC041137	4627	-	TSC_hg19_v1_chr1_-_19578013 D42044 AB384435 CU689920 BX648708	45873	-	AK075563 AK291618 TSC_hg19_v1_chr1_-_19578019	45898	-	NM_001136265|IFFO2|126917|intermediate filament family orphan 2##DQ893505|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##DQ896489|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##FJ462711|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##BC007581|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##BC023600|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK222486|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##U24266|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##U24267|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK289972|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_003748|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_170726|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK294552|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_001161504|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AF348492|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##NM_020765|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##BC041137|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##D42044|KIAA0090|23065|KIAA0090##BX648708|KIAA0090|23065|KIAA0090##AK075563|KIAA0090|23065|KIAA0090##AK291618|KIAA0090|23065|KIAA0090	0.997502	0.0	denovo_WM_7:22:0.793
chr15	59007582	59007709	reg1004775.p1	7.189	+	NM_000236 X07228 AK293324 AK309448 TSC_hg19_v1_chr15_+_58724189 D83548 BC132825 BC136495 J03895 J03540 AB528021 HQ258274	-283443	+	AK300055 NM_020980 AK313214 AF016495 AB008775 BC026258	-577159	+	NM_001206897 NM_003888 NM_170696	-649525	-	TSC_hg19_v1_chr15_-_59041794 BC055087 BC104659	34144	-	TSC_hg19_v1_chr15_-_59041833 AK300472	34177	-	TSC_hg19_v1_chr15_-_59041988 BC126253 BC143935 NM_001110	34409	-	NM_000236|LIPC|3990|lipase, hepatic##X07228|LIPC|3990|lipase, hepatic##AK293324|LIPC|3990|lipase, hepatic##AK309448|LIPC|3990|lipase, hepatic##D83548|LIPC|3990|lipase, hepatic##BC132825|LIPC|3990|lipase, hepatic##BC136495|LIPC|3990|lipase, hepatic##J03895|LIPC|3990|lipase, hepatic##J03540|LIPC|3990|lipase, hepatic##HQ258274|LIPC|3990|lipase, hepatic##AK300055|AQP9|366|aquaporin 9##NM_020980|AQP9|366|aquaporin 9##AK313214|AQP9|366|aquaporin 9##AF016495|AQP9|366|aquaporin 9##AB008775|AQP9|366|aquaporin 9##BC026258|AQP9|366|aquaporin 9##NM_001206897|ALDH1A2|8854|aldehyde dehydrogenase 1 family, member A2##NM_003888|ALDH1A2|8854|aldehyde dehydrogenase 1 family, member A2##NM_170696|ALDH1A2|8854|aldehyde dehydrogenase 1 family, member A2##BC055087|ADAM10|102|ADAM metallopeptidase domain 10##BC104659|ADAM10|102|ADAM metallopeptidase domain 10##AK300472|ADAM10|102|ADAM metallopeptidase domain 10##BC126253|ADAM10|102|ADAM metallopeptidase domain 10##BC143935|ADAM10|102|ADAM metallopeptidase domain 10##NM_001110|ADAM10|102|ADAM metallopeptidase domain 10	0.996939	0.0	denovo_WM_7:-23:0.841
chr1	182570627	182570763	reg1005441.p2	7.188	+	CU675308 TSC_hg19_v1_chr1_+_182569465	-1249	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	-12312	-	NM_001137669 AK302768 BC142944 AL136902	-151422	+	AF493937 BT006638 CU675307 AB528682 U94829 U70426 BC006243 TSC_hg19_v1_chr1_-_182573525 AK301261 AK311880 NM_002928	2775	-	BC069677 BC069718 BC103865 BC103866 BC103867 AF297015 NM_001102450 NM_033345	71346	-	NM_001200050 NM_001200051 NM_001200052 NM_001200056 NM_030769 BC042003	187889	+	AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_001137669|RGSL1|353299|regulator of G-protein signaling like 1##AK302768|RGSL1|353299|regulator of G-protein signaling like 1##BC142944|RGSL1|353299|regulator of G-protein signaling like 1##AL136902|RGSL1|353299|regulator of G-protein signaling like 1##AF493937|RGS16|6004|regulator of G-protein signaling 16##BT006638|RGS16|6004|regulator of G-protein signaling 16##U94829|RGS16|6004|regulator of G-protein signaling 16##U70426|RGS16|6004|regulator of G-protein signaling 16##BC006243|RGS16|6004|regulator of G-protein signaling 16##AK301261|RGS16|6004|regulator of G-protein signaling 16##AK311880|RGS16|6004|regulator of G-protein signaling 16##NM_002928|RGS16|6004|regulator of G-protein signaling 16##BC069677|RGS8|85397|regulator of G-protein signaling 8##BC069718|RGS8|85397|regulator of G-protein signaling 8##BC103865|RGS8|85397|regulator of G-protein signaling 8##BC103866|RGS8|85397|regulator of G-protein signaling 8##BC103867|RGS8|85397|regulator of G-protein signaling 8##AF297015|RGS8|85397|regulator of G-protein signaling 8##NM_001102450|RGS8|85397|regulator of G-protein signaling 8##NM_033345|RGS8|85397|regulator of G-protein signaling 8##NM_001200050|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200051|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200052|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200056|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_030769|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC042003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)	0.018752	0.997112	CTCF.p2:-49:0.997
chr12	6183608	6183788	reg1005556.p1	7.185	+	AJ272204 NM_020373	-128301	-	FJ384095 AB593159 TSC_hg19_v1_chr12_-_6054549	-129224	-	BC069773 NM_002527 BC107075 AB464638 CR541906 CU687004	-580360	+	X04385 AK301216 TSC_hg19_v1_chr12_-_6233752 AK292122 M17588 X04146 AK298097 BC022258 NM_000552	50061	-	TSC_hg19_v1_chr12_+_6309565 NM_001769 AK315219 AK308700 AK296332 AK309527 AY966455 X60111 AK296894 AK298431 BC011988 M38690 AY423720 DQ891314 DQ894498 AB590218 CU680148 L34068	125872	+	AK001527 NM_018173 BC104751 BC105961 BC109095	235935	+	AJ272204|ANO2|57101|anoctamin 2##NM_020373|ANO2|57101|anoctamin 2##FJ384095|ANO2|57101|anoctamin 2##AB593159|ANO2|57101|anoctamin 2##BC069773|NTF3|4908|neurotrophin 3##NM_002527|NTF3|4908|neurotrophin 3##BC107075|NTF3|4908|neurotrophin 3##CR541906|NTF3|4908|neurotrophin 3##X04385|VWF|7450|von Willebrand factor##AK301216|VWF|7450|von Willebrand factor##AK292122|VWF|7450|von Willebrand factor##M17588|VWF|7450|von Willebrand factor##X04146|VWF|7450|von Willebrand factor##AK298097|VWF|7450|von Willebrand factor##BC022258|VWF|7450|von Willebrand factor##NM_000552|VWF|7450|von Willebrand factor##NM_001769|CD9|928|CD9 molecule##AK315219|CD9|928|CD9 molecule##AK308700|CD9|928|CD9 molecule##AK296332|CD9|928|CD9 molecule##AK309527|CD9|928|CD9 molecule##AY966455|CD9|928|CD9 molecule##X60111|CD9|928|CD9 molecule##AK296894|CD9|928|CD9 molecule##AK298431|CD9|928|CD9 molecule##BC011988|CD9|928|CD9 molecule##M38690|CD9|928|CD9 molecule##AY423720|CD9|928|CD9 molecule##DQ891314|CD9|928|CD9 molecule##DQ894498|CD9|928|CD9 molecule##L34068|CD9|928|CD9 molecule##AK001527|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##NM_018173|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC104751|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC105961|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC109095|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6	0.996598	0.0	
chr22	42317881	42317995	reg1004910.p1	7.183	+	NM_001207020	-7268	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-88667	+	TSC_hg19_v1_chr22_+_42229253 BC056158 U02031 BC051385 CT841522 AK299914	-88737	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	4861	-	EU035297 NM_001110215	18284	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	25185	-	NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC056158|SREBF2|6721|sterol regulatory element binding transcription factor 2##U02031|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051385|SREBF2|6721|sterol regulatory element binding transcription factor 2##CT841522|SREBF2|6721|sterol regulatory element binding transcription factor 2##AK299914|SREBF2|6721|sterol regulatory element binding transcription factor 2##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M	0.998855	0.0	denovo_WM_7:-32:0.314	denovo_WM_7:-33:0.314	denovo_WM_7:-34:0.314
chr21	37949704	37949828	reg1005563.p1	7.182	+	AJ566766 NM_001146077	-900	-	AJ566765 NM_001146078	-34869	-	AF314090 AY355348 NM_001146079 NM_144492	-97379	-	BC052313 BC067104 TSC_hg19_v1_chr21_+_38071448	121674	+	NM_005069 NM_009586 BC110444	122239	+	TSC_hg19_v1_chr21_-_38338991 AK307940 NM_001242784	389093	-	AJ566766|CLDN14|23562|claudin 14##NM_001146077|CLDN14|23562|claudin 14##AJ566765|CLDN14|23562|claudin 14##NM_001146078|CLDN14|23562|claudin 14##AF314090|CLDN14|23562|claudin 14##AY355348|CLDN14|23562|claudin 14##NM_001146079|CLDN14|23562|claudin 14##NM_144492|CLDN14|23562|claudin 14##NM_005069|SIM2|6493|single-minded homolog 2 (Drosophila)##NM_009586|SIM2|6493|single-minded homolog 2 (Drosophila)##BC110444|SIM2|6493|single-minded homolog 2 (Drosophila)##AK307940|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##NM_001242784|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)	1.770092	0.0	denovo_WM_7:-22:0.415	denovo_WM_7:-23:0.262	denovo_WM_7:-36:0.251	denovo_WM_7:-39:0.468
chr2	189843438	189843584	reg1004036.p1	7.182	+	TSC_hg19_v1_chr2_+_189839133 AB384877 X07240	-4338	+	X14420 BX649097 TSC_hg19_v1_chr2_+_189839117	-4393	+	TSC_hg19_v1_chr2_+_189839098 AK308010 NM_000090 BC028178	-4417	+	AB384824 J04478 Y14690 AB209045 BC086874 AK297936 TSC_hg19_v1_chr2_-_190044488 AK300146 M31365 NM_000393	200956	-	BC040567 NM_032168 TSC_hg19_v1_chr2_+_190306177	462659	+	TSC_hg19_v1_chr2_+_190306204 AK022607 AK290445 CR749440 AK022581 AK091546 AX747050	462698	+	X07240|COL3A1|1281|collagen, type III, alpha 1##X14420|COL3A1|1281|collagen, type III, alpha 1##AK308010|COL3A1|1281|collagen, type III, alpha 1##NM_000090|COL3A1|1281|collagen, type III, alpha 1##BC028178|COL3A1|1281|collagen, type III, alpha 1##J04478|COL5A2|1290|collagen, type V, alpha 2##Y14690|COL5A2|1290|collagen, type V, alpha 2##AB209045|COL5A2|1290|collagen, type V, alpha 2##BC086874|COL5A2|1290|collagen, type V, alpha 2##AK297936|COL5A2|1290|collagen, type V, alpha 2##AK300146|COL5A2|1290|collagen, type V, alpha 2##M31365|COL5A2|1290|collagen, type V, alpha 2##NM_000393|COL5A2|1290|collagen, type V, alpha 2##BC040567|WDR75|84128|WD repeat domain 75##NM_032168|WDR75|84128|WD repeat domain 75##AK022607|WDR75|84128|WD repeat domain 75##AK290445|WDR75|84128|WD repeat domain 75##CR749440|WDR75|84128|WD repeat domain 75##AK022581|WDR75|84128|WD repeat domain 75##AK091546|WDR75|84128|WD repeat domain 75	0.993766	0.0	
chr11	118563172	118563321	reg1004737.p1	7.181	+	AK223140 AK309565 AK091981 AK223143 AX747289 BC109206 NM_007180 AB000824	-12879	-	NM_001144758 NM_001144759 TSC_hg19_v1_chr11_+_118478332 CR749783 BC098586 AB014538 AK295819 AL832373 AK074070 AK125783	-84869	+	AB094090 NM_015157	-86034	+	BC065007 TSC_hg19_v1_chr11_-_118661679 AK313244	98387	-	TSC_hg19_v1_chr11_-_118661835 D17532	98590	-	BC039826 TSC_hg19_v1_chr11_-_118661855	98609	-	AK223140|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK309565|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK091981|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK223143|TREH|11181|trehalase (brush-border membrane glycoprotein)##BC109206|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_007180|TREH|11181|trehalase (brush-border membrane glycoprotein)##AB000824|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_001144758|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_001144759|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##CR749783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC098586|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB014538|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK295819|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AL832373|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK074070|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK125783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC065007|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK313244|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##D17532|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC039826|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.999812	0.0	denovo_WM_7:-15:0.230	denovo_WM_7:-16:0.230	denovo_WM_7:-17:0.230	denovo_WM_7:-18:0.230
chr10	46257346	46257518	reg1004414.p1	7.179	+	NM_001169106 NM_001169107 NM_015262 TSC_hg19_v1_chr10_+_46222703 AK291430 AB011164 BC150611 AK303048 AK293929 BC053887	-34725	+	TSC_hg19_v1_chr10_-_46168221 AK090704 AX746581 BC017591 AK292420 AK292469 AK314395 AK097924 NM_001128324 NM_174890 BC045587	-89218	-	TSC_hg19_v1_chr10_-_46090318 BC066988 NM_001002265 NM_145021	-167138	-	BC171820 BC171833 AF411132 NM_133446	85481	-	AB464105 AY704146 AY704149 AY704151 AY704155 BC093750 BC113473 BC143394 BC171725 NM_001042357 NM_001042389	362564	-	AY704141 AY704142 AY704143 AY704144 AY704145 AY704147 AY704148 AY704150 AY704152 AY704153 AY704154 AY704156 AY704157 AY704158 NM_001042358 NM_001042359 NM_001042360 NM_001042361 NM_001042362 NM_001042390 NM_001042391 NM_001042392 NM_001042393 NM_001042394 AY753191	383256	-	NM_001169106|FAM21C|253725|family with sequence similarity 21, member C##NM_001169107|FAM21C|253725|family with sequence similarity 21, member C##NM_015262|FAM21C|253725|family with sequence similarity 21, member C##AK291430|FAM21C|253725|family with sequence similarity 21, member C##AB011164|FAM21C|253725|family with sequence similarity 21, member C##BC150611|FAM21C|253725|family with sequence similarity 21, member C##AK303048|FAM21C|253725|family with sequence similarity 21, member C##AK293929|FAM21C|253725|family with sequence similarity 21, member C##BC053887|FAM21C|253725|family with sequence similarity 21, member C##AK090704|ZFAND4|93550|zinc finger, AN1-type domain 4##BC017591|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292420|ZFAND4|93550|zinc finger, AN1-type domain 4##AK292469|ZFAND4|93550|zinc finger, AN1-type domain 4##AK314395|ZFAND4|93550|zinc finger, AN1-type domain 4##AK097924|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_001128324|ZFAND4|93550|zinc finger, AN1-type domain 4##NM_174890|ZFAND4|93550|zinc finger, AN1-type domain 4##BC045587|ZFAND4|93550|zinc finger, AN1-type domain 4##BC066988|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_001002265|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##NM_145021|MARCH8|220972|membrane-associated ring finger (C3HC4) 8##BC171833|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##AF411132|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##NM_133446|AGAP4|119016|ArfGAP with GTPase domain, ankyrin repeat and PH domain 4##AY704146|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704149|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704151|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704155|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC093750|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC113473|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC143394|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BC171725|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042357|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042389|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##AY704141|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704142|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704143|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704144|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704145|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704147|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704148|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704150|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704152|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704153|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704154|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704156|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704157|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704158|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042358|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042359|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042360|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042361|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042362|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042390|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042391|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042392|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042393|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042394|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##AY753191|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B	0.999402	0.0	denovo_WM_7:32:0.848
chr2	47547054	47547181	reg1004805.p1	7.179	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-143408	-	TSC_hg19_v1_chr2_-_47403656 BC008437	-143463	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	-143467	-	NM_002354 TSC_hg19_v1_chr2_+_47596376	49225	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	49428	+	TSC_hg19_v1_chr2_+_47630218 AK304496	83087	+	NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	0.998959	0.0	
chr2	10221179	10221359	reg1005255.p2	7.177	+	TSC_hg19_v1_chr2_-_10220367 AB590068 AF544983 NM_001037160	-840	-	AK091299 TSC_hg19_v1_chr2_-_10220297	-1033	-	AB463821 TSC_hg19_v1_chr2_+_10186406	-34924	+	NM_001165931 S40301 X59618 TSC_hg19_v1_chr2_+_10262805	41490	+	TSC_hg19_v1_chr2_+_10262865 NM_001034 AK092671 AK123010 AK313719 BC030154 BC001886 DQ891863 DQ895052 AB529158	41620	+	BC093999 BC094001 NM_182626	60710	+	AF544983|CYS1|192668|cystin 1##NM_001037160|CYS1|192668|cystin 1##AK091299|CYS1|192668|cystin 1##NM_001165931|RRM2|6241|ribonucleotide reductase M2##S40301|RRM2|6241|ribonucleotide reductase M2##X59618|RRM2|6241|ribonucleotide reductase M2##NM_001034|RRM2|6241|ribonucleotide reductase M2##AK092671|RRM2|6241|ribonucleotide reductase M2##AK123010|RRM2|6241|ribonucleotide reductase M2##AK313719|RRM2|6241|ribonucleotide reductase M2##BC030154|RRM2|6241|ribonucleotide reductase M2##BC001886|RRM2|6241|ribonucleotide reductase M2##DQ891863|RRM2|6241|ribonucleotide reductase M2##DQ895052|RRM2|6241|ribonucleotide reductase M2##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48	0.998485	0.0	denovo_WM_7:-10:0.753	denovo_WM_7:-11:0.231
chr1	27804738	27804918	reg1004803.p2	7.174	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-72644	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-85662	+	BC137466 AY358761 NM_207397	-95036	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	11772	-	TSC_hg19_v1_chr1_-_27816670 BC012329	11843	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	11848	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	2.006601	0.0	denovo_WM_7:-31:0.313	denovo_WM_7:-32:0.313	denovo_WM_7:-33:0.313	denovo_WM_7:-97:0.982
chr13	47156639	47156819	reg1003830.p2	7.174	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-29222	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-29309	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-29406	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	214586	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	314338	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1418722	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	2.163793	0.0	denovo_WM_7:-99:0.995
chr16	81835598	81835745	reg1005396.p2	7.174	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-22741	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-22769	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-22774	+	BC019670 AK315652 AK026740 NM_145168	209397	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	233190	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	233261	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	1.985496	0.0	
chr4	129437968	129438124	reg1004806.p1	7.174	+	AK131272 NM_006320	-228063	-	TSC_hg19_v1_chr4_-_129208969 BC092478	-229055	-	AK091741 AX747155 TSC_hg19_v1_chr4_-_129208964 BC016692	-229082	-	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	292824	+	TSC_hg19_v1_chr4_+_129732427 BC032376	294407	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	576544	-	AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC092478|PGRMC2|10424|progesterone receptor membrane component 2##AK091741|PGRMC2|10424|progesterone receptor membrane component 2##BC016692|PGRMC2|10424|progesterone receptor membrane component 2##NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##BC032376|PHF17|79960|PHD finger protein 17##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1	0.0	0.0	
chr1	150132669	150132735	reg1004234.p2	7.172	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-10264	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-10398	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-10570	+	AK095228 NM_001136479	74323	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	75565	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	75749	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.99503	0.0	
chr1	27744991	27745107	reg1004465.p1	7.172	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-12865	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-25883	+	BC137466 AY358761 NM_207397	-35257	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	71551	-	TSC_hg19_v1_chr1_-_27816670 BC012329	71622	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	71627	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	0.0	0.0	
chr4	108911799	108911910	reg1004291.p1	7.172	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-781	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-842	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-918	+	AK303272 NM_001166119	176060	-	TSC_hg19_v1_chr4_+_109088684 BC020624	176830	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	177945	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	0.995689	0.0	
chr19	8333694	8333874	reg1000723.p2	7.171	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-59536	+	AB384635 AB053450 BC153882 NM_032447	-121409	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-215837	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	39425	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	52473	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	52502	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.0	0.0	
chr12	96609041	96609221	reg1003210.p2	7.170	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-20864	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-21005	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-179716	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	184852	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	185186	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	691900	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.0	0.996128	CTCF.p2:15:0.996
chr1	153537775	153537875	reg1004100.p1	7.169	+	BC012893 NM_002960 Z18948	-16100	-	BC000838 BC024974 AK292083 BC016300 NM_002961 NM_019554 TSC_hg19_v1_chr1_-_153518283	-19551	-	BC093955 BC093957 NM_002962 Z18954	-23657	-	BC002829 NM_005978	480	-	BC095462 U92985 TSC_hg19_v1_chr1_-_153581484 AK290804	43640	-	TSC_hg19_v1_chr1_-_153585546 BC010541 NM_080388 AY221961 BC019099 AY762098	47739	-	BC012893|S100A3|6274|S100 calcium binding protein A3##NM_002960|S100A3|6274|S100 calcium binding protein A3##Z18948|S100A3|6274|S100 calcium binding protein A3##BC000838|S100A4|6275|S100 calcium binding protein A4##BC024974|S100A4|6275|S100 calcium binding protein A4##AK292083|S100A4|6275|S100 calcium binding protein A4##BC016300|S100A4|6275|S100 calcium binding protein A4##NM_002961|S100A4|6275|S100 calcium binding protein A4##NM_019554|S100A4|6275|S100 calcium binding protein A4##BC093955|S100A5|6276|S100 calcium binding protein A5##BC093957|S100A5|6276|S100 calcium binding protein A5##NM_002962|S100A5|6276|S100 calcium binding protein A5##Z18954|S100A5|6276|S100 calcium binding protein A5##BC002829|S100A2|6273|S100 calcium binding protein A2##NM_005978|S100A2|6273|S100 calcium binding protein A2##BC095462|S100A16|140576|S100 calcium binding protein A16##U92985|S100A16|140576|S100 calcium binding protein A16##AK290804|S100A16|140576|S100 calcium binding protein A16##BC010541|S100A16|140576|S100 calcium binding protein A16##NM_080388|S100A16|140576|S100 calcium binding protein A16##AY221961|S100A16|140576|S100 calcium binding protein A16##BC019099|S100A16|140576|S100 calcium binding protein A16##AY762098|S100A16|140576|S100 calcium binding protein A16	0.99848	0.0	
chr4	164417221	164417338	reg1003520.p1	7.168	+	TSC_hg19_v1_chr4_+_164415868 BC011842	-1406	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-1437	+	TSC_hg19_v1_chr4_+_164415817 BC017418 AK298235	-1463	+	AB463878 AK000675 AK301408 NM_017923	117436	-	NM_012403	701583	-	AK289711 NM_001166373	887127	-	BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##BC017418|C4orf43|55319|chromosome 4 open reading frame 43##AK298235|C4orf43|55319|chromosome 4 open reading frame 43##AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1	0.031104	0.0	
chr8	99378115	99378271	reg1004282.p1	7.167	+	BC132687 BC144055 TSC_hg19_v1_chr8_-_99306600 AK024017 NM_024759	-71594	-	BC011529 NM_015029	-248126	+	TSC_hg19_v1_chr8_+_99129543 NM_001145860 NM_001145861 X99302 AK291434	-248655	+	BC034778 NM_020697 BC027932 TSC_hg19_v1_chr8_+_99439361 AB032970	61153	+	CU679773 AB528979 U60206 AK291837 TSC_hg19_v1_chr8_-_99837906 AK075229 BC010640 AK307787 AK312660 NM_006281 U26424	459654	-	NM_001142462 NM_053001 TSC_hg19_v1_chr8_+_99956669 AK074518 AK291491 AK310994 BC016936 AY038073	578464	+	BC132687|NIPAL2|79815|NIPA-like domain containing 2##BC144055|NIPAL2|79815|NIPA-like domain containing 2##AK024017|NIPAL2|79815|NIPA-like domain containing 2##NM_024759|NIPAL2|79815|NIPA-like domain containing 2##BC011529|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015029|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145860|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145861|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##X99302|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##AK291434|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##BC034778|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##NM_020697|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##BC027932|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##AB032970|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##U60206|STK3|6788|serine/threonine kinase 3##AK291837|STK3|6788|serine/threonine kinase 3##AK075229|STK3|6788|serine/threonine kinase 3##BC010640|STK3|6788|serine/threonine kinase 3##AK307787|STK3|6788|serine/threonine kinase 3##AK312660|STK3|6788|serine/threonine kinase 3##NM_006281|STK3|6788|serine/threonine kinase 3##U26424|STK3|6788|serine/threonine kinase 3##NM_001142462|OSR2|116039|odd-skipped related 2 (Drosophila)##NM_053001|OSR2|116039|odd-skipped related 2 (Drosophila)##AK074518|OSR2|116039|odd-skipped related 2 (Drosophila)##AK291491|OSR2|116039|odd-skipped related 2 (Drosophila)##AK310994|OSR2|116039|odd-skipped related 2 (Drosophila)##BC016936|OSR2|116039|odd-skipped related 2 (Drosophila)##AY038073|OSR2|116039|odd-skipped related 2 (Drosophila)	0.956289	0.0	denovo_WM_7:-2:0.410	denovo_WM_7:-3:0.374
chr2	54900151	54900293	reg1005032.p2	7.164	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-114657	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-215855	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-216610	+	NM_001039753	51926	+	TSC_hg19_v1_chr2_-_55199899 BC131571	299686	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	337150	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	0.816106	0.0	denovo_WM_7:-37:0.310	denovo_WM_7:-38:0.376
chr1	28913745	28913883	reg1005859.p2	7.162	+	BC064589 BC068048 AK092096 BC045792 TSC_hg19_v1_chr1_-_28908385	-5444	-	TSC_hg19_v1_chr1_+_28879528 NM_017846 AK000510 AK309481 AK023555 AK300162 BC000680 BC039879 BC035855 AB528915	-34244	+	TSC_hg19_v1_chr1_+_28844766 BC069198	-69032	+	BC033175 NM_152304 AK312176	4928	+	NM_001193532 AK026009	5202	+	BC011986 TSC_hg19_v1_chr1_-_28969617 U57693 X84002 AK310097 NM_001135218 NM_005644	55766	-	BC064589|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC068048|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##AK092096|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC045792|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##NM_017846|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK000510|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK309481|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK023555|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK300162|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC000680|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC039879|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC035855|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC069198|RCC1|1104|regulator of chromosome condensation 1##BC033175|RAB42|115273|RAB42, member RAS oncogene family##NM_152304|RAB42|115273|RAB42, member RAS oncogene family##AK312176|RAB42|115273|RAB42, member RAS oncogene family##NM_001193532|RAB42|115273|RAB42, member RAS oncogene family##BC011986|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##U57693|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##X84002|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##AK310097|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_001135218|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_005644|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa	0.998455	0.0	denovo_WM_7:16:0.518	denovo_WM_7:17:0.462
chr17	27468388	27468525	reg1004799.p2	7.162	+	TSC_hg19_v1_chr17_-_27467408 AB177860 AY703984 AK303522 AK302725	-1045	-	AK054958 NM_004740	-65830	-	TSC_hg19_v1_chr17_-_27401793 BC131561 BC047669	-66598	-	TSC_hg19_v1_chr17_-_27507417 CR933614 NM_078471 NM_203318 D86970	38894	-	NM_005208 BC113693 BC069537 CU686900 HQ258110	105421	+	AB385448 AJ493465 BC129989 BC129990 BC108307 AK297732 TSC_hg19_v1_chr17_-_27621134 AB037742 AY232289	152654	-	AB177860|MYO18A|399687|myosin XVIIIA##AY703984|MYO18A|399687|myosin XVIIIA##AK303522|MYO18A|399687|myosin XVIIIA##AK302725|MYO18A|399687|myosin XVIIIA##AK054958|TIAF1|9220|TGFB1-induced anti-apoptotic factor 1##NM_004740|TIAF1|9220|TGFB1-induced anti-apoptotic factor 1##BC131561|TIAF1|9220|TGFB1-induced anti-apoptotic factor 1##BC047669|TIAF1|9220|TGFB1-induced anti-apoptotic factor 1##CR933614|MYO18A|399687|myosin XVIIIA##NM_078471|MYO18A|399687|myosin XVIIIA##NM_203318|MYO18A|399687|myosin XVIIIA##D86970|MYO18A|399687|myosin XVIIIA##NM_005208|CRYBA1|1411|crystallin, beta A1##BC113693|CRYBA1|1411|crystallin, beta A1##BC069537|CRYBA1|1411|crystallin, beta A1##HQ258110|CRYBA1|1411|crystallin, beta A1##AJ493465|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129989|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129990|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC108307|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK297732|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AB037742|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AY232289|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2	0.980186	0.0	denovo_WM_7:4:0.923
chr12	120604514	120604613	reg1003482.p2	7.160	+	TSC_hg19_v1_chr12_+_120554697 BC041995 AK130486	-49854	+	TSC_hg19_v1_chr12_-_120554632 NM_001167606 NM_006861	-49924	-	TSC_hg19_v1_chr12_-_120554558 AK300127	-49998	-	TSC_hg19_v1_chr12_-_120632504 AB587307 AK297271 BC153881 D86973 NM_006836	27925	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	34338	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	34347	-	NM_001167606|RAB35|11021|RAB35, member RAS oncogene family##NM_006861|RAB35|11021|RAB35, member RAS oncogene family##AK300127|RAB35|11021|RAB35, member RAS oncogene family##AK297271|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC153881|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##D86973|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##NM_006836|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0	1.852736	0.0	denovo_WM_7:-45:0.248	denovo_WM_7:-46:0.248	denovo_WM_7:-47:0.248	denovo_WM_7:-48:0.248	denovo_WM_7:96:0.460	denovo_WM_7:97:0.281
chr1	1760020	1760128	reg1005133.p1	7.159	+	TSC_hg19_v1_chr1_-_1711471 AF250320 NM_001198994	-48594	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	-49805	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	-50188	-	TSC_hg19_v1_chr1_-_1822437 BC004186 X04526 AK295607 BC140714 BC171773	62378	-	TSC_hg19_v1_chr1_-_1822496 BC008991	62421	-	AK312614 TSC_hg19_v1_chr1_-_1822502	62428	-	AF250320|NADK|65220|NAD kinase##NM_001198994|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC004186|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##X04526|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##BC140714|CDK11B|984|cyclin-dependent kinase 11B##BC171773|CDK11B|984|cyclin-dependent kinase 11B##BC008991|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##AK312614|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1	0.036283	0.0	
chr4	11343428	11343563	reg1005518.p1	7.159	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-657094	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-884485	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-1224959	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	87037	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2142456	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2142480	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.994557	0.0	denovo_WM_7:45:0.861
chr4	100298636	100298747	reg1005254.p2	7.158	+	CU688112 BC074786 BC066227 BC066228 BC067419 BC067420 BC067421 BC067422 BC074771 BC062476 M12272 X04299 TSC_hg19_v1_chr4_-_100273904 NM_000669	-24818	-	BT019812 D00137 M24317 M21692 AK304396 BX647469 AF153821 AK299409 AK316501 X03350 AK301018 AK303945 AK311712 BC033009 TSC_hg19_v1_chr4_-_100242559 NM_000668	-56162	-	M12271 BC074738 BC117442 BC126306 AK290558 M12963 AK309597 NM_000667	-86557	-	AK301696 NM_001166504	57599	-	X76342 AK223472 BC131512 U07821 AK301657 AK310811 AK312854 NM_000673	57866	-	NM_032149 AK093085 AX747911 AK223345 AK314711 AL136838	133488	+	BC074786|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC066227|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC066228|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC067419|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC067420|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC067421|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC067422|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC074771|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BC062476|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##M12272|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##X04299|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##NM_000669|ADH1C|126|alcohol dehydrogenase 1C (class I), gamma polypeptide##BT019812|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##D00137|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##M24317|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##M21692|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##AK304396|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##BX647469|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##AF153821|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##AK299409|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##AK316501|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##X03350|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##AK301018|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##AK303945|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##BC033009|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##NM_000668|ADH1B|125|alcohol dehydrogenase 1B (class I), beta polypeptide##M12271|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##BC074738|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##BC117442|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##BC126306|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##AK290558|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##M12963|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##AK309597|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##NM_000667|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##AK301696|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##NM_001166504|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##X76342|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##AK223472|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##BC131512|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##U07821|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##AK301657|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##AK310811|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##AK312854|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##NM_000673|ADH7|131|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide##NM_032149|C4orf17|84103|chromosome 4 open reading frame 17##AK093085|C4orf17|84103|chromosome 4 open reading frame 17##AK223345|C4orf17|84103|chromosome 4 open reading frame 17##AK314711|C4orf17|84103|chromosome 4 open reading frame 17##AL136838|C4orf17|84103|chromosome 4 open reading frame 17	0.999132	0.0	denovo_WM_7:47:0.239	denovo_WM_7:48:0.239	denovo_WM_7:49:0.239	denovo_WM_7:50:0.239
chr5	116221598	116221721	reg1001897.p1	7.158	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-311145	-	TSC_hg19_v1_chr5_+_115898220 D28352	-323435	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-800938	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2102579	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2185152	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2185506	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.976684	0.0	denovo_WM_7:69:0.364
chr9	128399646	128399810	reg1005603.p1	7.158	+	TSC_hg19_v1_chr9_+_128024122 AK056493 NM_015635 AB040954 BC114937 BC114962	-375579	+	TSC_hg19_v1_chr9_+_128024104 BC110990	-375624	+	TSC_hg19_v1_chr9_+_128024097 AK296381	-375630	+	TSC_hg19_v1_chr9_-_128469297 M37191	69582	-	TSC_hg19_v1_chr9_-_128469466 AK290060	69739	-	AL833042 TSC_hg19_v1_chr9_-_128469485 AY633624 AY633625 AY633626 BC002326 BC003044	69751	-	AK056493|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##NM_015635|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AB040954|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114937|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114962|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##M37191|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AK290060|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AL833042|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633624|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633625|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633626|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC002326|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC003044|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1	0.525081	0.0	denovo_WM_7:-40:0.397
chr5	90575433	90575575	reg1005628.p1	7.157	+	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-720890	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-750138	-	NM_006467 AK295434 U93868	-804802	+	AK091866 TSC_hg19_v1_chr5_-_90610220	34741	-	TSC_hg19_v1_chr5_+_90676181 BC043415	100658	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	103628	-	AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3	1.940299	0.0	denovo_WM_7:47:0.952	denovo_WM_7:62:0.962
chr16	48642762	48642942	reg1000389.p2	7.156	+	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-223600	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-243061	-	BC042550 TSC_hg19_v1_chr16_-_48399765	-243092	-	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	1264	-	AB527638 TSC_hg19_v1_chr16_-_49315397	672541	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	672648	-	BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor	0.0	0.0	
chr19	13832174	13832304	reg1005678.p2	7.155	+	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	-215063	-	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-568059	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-570947	+	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	10340	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	26480	+	TSC_hg19_v1_chr19_+_13875323 NM_001031727 NM_032285	43081	+	AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130##NM_001031727|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##NM_032285|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	0.984377	0.0	denovo_WM_7:-47:0.960
chr19	23457078	23457258	reg1005658.p1	7.153	+	TSC_hg19_v1_chr19_-_23457022 AK023040	-150	-	AK301230 TSC_hg19_v1_chr19_-_23433196	-23969	-	AK131472 TSC_hg19_v1_chr19_+_23299828	-157362	+	TSC_hg19_v1_chr19_-_23578274 AK300294 L11672 AK291256 NM_003430	121096	-	TSC_hg19_v1_chr19_-_23598839 AK022793	141676	-	TSC_hg19_v1_chr19_-_23598867 BC041431	141701	-	AK023040|LOC100132815|100132815|importin 5 pseudogene##AK301230|ZNF724P|440519|zinc finger protein 724, pseudogene##AK131472|ZNF730|100129543|zinc finger protein 730##AK300294|ZNF91|7644|zinc finger protein 91##L11672|ZNF91|7644|zinc finger protein 91##AK291256|ZNF91|7644|zinc finger protein 91##NM_003430|ZNF91|7644|zinc finger protein 91	0.0	0.0	
chr19	5689360	5689537	reg1006309.p1	7.153	+	CU690982 TSC_hg19_v1_chr19_+_5687370	-2120	+	TSC_hg19_v1_chr19_+_5681182 BC053546 BC072434 BC018336	-8280	+	TSC_hg19_v1_chr19_+_5681023 BC094798 AY268351 AY313895 AY313896 NM_198704 NM_198705 AK308206 AY313894 NM_198533 AY268353 NM_198707 BC062777 AY268352 AY268354 NM_198706 NM_198708	-8403	+	TSC_hg19_v1_chr19_+_5690306 NM_033643 BC091508 AL050273 AY590779 AK311990	840	+	TSC_hg19_v1_chr19_+_5690307 BC004971	869	+	TSC_hg19_v1_chr19_+_5690333 NM_015414 BC003052 AF077043 AM393173 AM393746 DQ892096 DQ895289 CR533465	977	+	BC053546|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##BC072434|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##BC018336|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##BC094798|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY268351|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY313895|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY313896|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_198704|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_198705|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AK308206|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY313894|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_198533|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY268353|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_198707|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##BC062777|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY268352|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##AY268354|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_198706|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_198708|HSD11B1L|374875|hydroxysteroid (11-beta) dehydrogenase 1-like##NM_033643|RPL36|25873|ribosomal protein L36##BC091508|RPL36|25873|ribosomal protein L36##AL050273|RPL36|25873|ribosomal protein L36##AK311990|RPL36|25873|ribosomal protein L36##BC004971|RPL36|25873|ribosomal protein L36##NM_015414|RPL36|25873|ribosomal protein L36##BC003052|RPL36|25873|ribosomal protein L36##AF077043|RPL36|25873|ribosomal protein L36##AM393173|RPL36|25873|ribosomal protein L36##AM393746|RPL36|25873|ribosomal protein L36##DQ892096|RPL36|25873|ribosomal protein L36##DQ895289|RPL36|25873|ribosomal protein L36##CR533465|RPL36|25873|ribosomal protein L36	0.0	0.0	
chr10	12622283	12622433	reg1004906.p1	7.152	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-230581	+	TSC_hg19_v1_chr10_+_12391709 BC035745	-230641	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	-230783	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	421341	-	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	519787	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	581210	+	AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10	0.99888	0.0	
chr19	54894998	54895138	reg1004093.p1	7.152	+	AK303261 TSC_hg19_v1_chr19_-_54882123 AK097869	-12976	-	TSC_hg19_v1_chr19_-_54876672 NM_002287 NM_021706	-18373	-	TSC_hg19_v1_chr19_-_54876541 AK290415 AK315419	-18517	-	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	31583	+	AB162930 TSC_hg19_v1_chr19_+_54926723	31654	+	NM_052925	64996	+	AK303261|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK097869|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_002287|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_021706|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK290415|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK315419|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8	0.999397	0.0	denovo_WM_7:29:0.739
chr3	150300986	150301098	reg1005910.p2	7.152	+	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-36456	+	AF212241 AK298586 TSC_hg19_v1_chr3_+_150264573 AK027356 AK293993 NM_032025	-36498	+	TSC_hg19_v1_chr3_-_150264284 AK093929 AF136975 AK098135 AK090933 NM_014445	-36689	-	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	19934	-	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	20113	+	AK093375 AX748085 BC036239 BC029577 NM_152394	120687	-	BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF212241|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK298586|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK027356|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK293993|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##NM_032025|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093929|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AF136975|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK098135|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK090933|SERP1|27230|stress-associated endoplasmic reticulum protein 1##NM_014445|SERP1|27230|stress-associated endoplasmic reticulum protein 1##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A	0.0	0.0	
chr3	186729941	186730094	reg1005662.p2	7.149	+	U67847 TSC_hg19_v1_chr3_+_186714361	-15669	+	X17247 TSC_hg19_v1_chr3_+_186648632	-81440	+	TSC_hg19_v1_chr3_+_186648314 NM_173216 NM_173217	-81708	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	9655	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	127239	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	185325	+	X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_173216|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_173217|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1	0.991557	0.0	denovo_WM_7:35:0.686
chr11	67035797	67035977	reg1005875.p2	7.148	+	TSC_hg19_v1_chr11_+_67034167 CU691526 DQ891148 DQ894328	-1714	+	TSC_hg19_v1_chr11_+_67034155 M80776	-1734	+	TSC_hg19_v1_chr11_+_67033929 BC037963 BC090863	-1953	+	NM_207354 TSC_hg19_v1_chr11_+_67056786 BC110419	20887	+	TSC_hg19_v1_chr11_+_67056815 AK124721 AK096277 AK126438	20956	+	NM_017857 TSC_hg19_v1_chr11_+_67070955 AK000522	35054	+	DQ891148|ADRBK1|156|adrenergic, beta, receptor kinase 1##DQ894328|ADRBK1|156|adrenergic, beta, receptor kinase 1##M80776|ADRBK1|156|adrenergic, beta, receptor kinase 1##BC037963|ADRBK1|156|adrenergic, beta, receptor kinase 1##BC090863|ADRBK1|156|adrenergic, beta, receptor kinase 1##NM_207354|ANKRD13D|338692|ankyrin repeat domain 13 family, member D##BC110419|ANKRD13D|338692|ankyrin repeat domain 13 family, member D##AK124721|ANKRD13D|338692|ankyrin repeat domain 13 family, member D##AK096277|ANKRD13D|338692|ankyrin repeat domain 13 family, member D##AK126438|ANKRD13D|338692|ankyrin repeat domain 13 family, member D##NM_017857|SSH3|54961|slingshot homolog 3 (Drosophila)##AK000522|SSH3|54961|slingshot homolog 3 (Drosophila)	0.0	0.0	
chr3	186251885	186252046	reg1005494.p2	7.148	+	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	-172031	-	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	-425109	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	-425619	-	CU686840 AF161703 BC069478 AK314172 NM_017541	10175	-	TSC_hg19_v1_chr3_-_186285118 AK001422 BC025748	33143	-	NM_018138 TSC_hg19_v1_chr3_-_186285140	33176	-	BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa##BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##AF161703|CRYGS|1427|crystallin, gamma S##BC069478|CRYGS|1427|crystallin, gamma S##AK314172|CRYGS|1427|crystallin, gamma S##NM_017541|CRYGS|1427|crystallin, gamma S##AK001422|TBCCD1|55171|TBCC domain containing 1##BC025748|TBCCD1|55171|TBCC domain containing 1##NM_018138|TBCCD1|55171|TBCC domain containing 1	0.0	0.0	
chr15	85148080	85148220	reg1005088.p2	7.146	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	-3869	+	NM_001243531	-306909	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-825323	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	49322	-	TSC_hg19_v1_chr15_-_85197503 AF161382 AK295372 BC014115 AK027794 AK055729 AK225199	49356	-	TSC_hg19_v1_chr15_-_85197515 AK225068 NM_032856 BC050648 BC063392	49376	-	AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73##AF161382|WDR73|84942|WD repeat domain 73##AK295372|WDR73|84942|WD repeat domain 73##BC014115|WDR73|84942|WD repeat domain 73##AK027794|WDR73|84942|WD repeat domain 73##AK055729|WDR73|84942|WD repeat domain 73##AK225199|WDR73|84942|WD repeat domain 73##AK225068|WDR73|84942|WD repeat domain 73##NM_032856|WDR73|84942|WD repeat domain 73##BC050648|WDR73|84942|WD repeat domain 73##BC063392|WDR73|84942|WD repeat domain 73	0.30701	0.0	
chr19	7186601	7186726	reg1001612.p3	7.146	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-87112	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-116948	+	AK315405 NM_001044387 NM_001044388 NM_024341	-117201	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	107297	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	273344	+	TSC_hg19_v1_chr19_+_7460061 AB011093	273414	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.748581	0.0	denovo_WM_7:39:0.773	denovo_WM_7:55:0.587
chr19	12512243	12512408	reg1004159.p1	7.145	+	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	-271	-	AK024418 AK295923 NM_030824	-35865	-	AK313755 BC022523 AK092116 AX747362 NM_145276	-67841	-	AK299532 TSC_hg19_v1_chr19_-_12551771	39441	-	AK023025 BC032753 TSC_hg19_v1_chr19_-_12551836 AB011414 NM_005815	39541	-	BC136746 BC136751 AK290911 TSC_hg19_v1_chr19_-_12595603 BC036481	83251	-	NM_001080821|ZNF799|90576|zinc finger protein 799##AK024418|ZNF442|79973|zinc finger protein 442##AK295923|ZNF442|79973|zinc finger protein 442##NM_030824|ZNF442|79973|zinc finger protein 442##AK313755|ZNF563|147837|zinc finger protein 563##BC022523|ZNF563|147837|zinc finger protein 563##AK092116|ZNF563|147837|zinc finger protein 563##NM_145276|ZNF563|147837|zinc finger protein 563##AK299532|ZNF443|10224|zinc finger protein 443##AK023025|ZNF443|10224|zinc finger protein 443##BC032753|ZNF443|10224|zinc finger protein 443##AB011414|ZNF443|10224|zinc finger protein 443##NM_005815|ZNF443|10224|zinc finger protein 443##BC136746|ZNF709|163051|zinc finger protein 709##BC136751|ZNF709|163051|zinc finger protein 709##AK290911|ZNF709|163051|zinc finger protein 709##BC036481|ZNF709|163051|zinc finger protein 709	0.99926	0.0	
chrX	150493754	150493909	reg1005398.p1	7.145	+	NM_004224 U52219 BC103696 BC105683 BC105684 EU432118 AY114101 AY114102	-148632	+	TSC_hg19_v1_chrX_+_150151807 BX537505 NM_005342 Y10043 BC070482	-342024	+	TSC_hg19_v1_chrX_-_150067149 BC030536 AY358837 AL136580 NM_001184808 NM_001242614 NM_031462 NM_134445 NM_134446	-426624	-	TSC_hg19_v1_chrX_+_150565667 NM_001017980	71831	+	TSC_hg19_v1_chrX_+_150565686 AK096835	71849	+	TSC_hg19_v1_chrX_+_150565705 BC103701 BC103702 BC105693 BC105694 AL833596 BC110800 AM392666 AB528749	71904	+	NM_004224|GPR50|9248|G protein-coupled receptor 50##U52219|GPR50|9248|G protein-coupled receptor 50##BC103696|GPR50|9248|G protein-coupled receptor 50##BC105683|GPR50|9248|G protein-coupled receptor 50##BC105684|GPR50|9248|G protein-coupled receptor 50##EU432118|GPR50|9248|G protein-coupled receptor 50##AY114101|GPR50|9248|G protein-coupled receptor 50##AY114102|GPR50|9248|G protein-coupled receptor 50##BX537505|HMGB3|3149|high mobility group box 3##NM_005342|HMGB3|3149|high mobility group box 3##Y10043|HMGB3|3149|high mobility group box 3##BC070482|HMGB3|3149|high mobility group box 3##BC030536|CD99L2|83692|CD99 molecule-like 2##AY358837|CD99L2|83692|CD99 molecule-like 2##AL136580|CD99L2|83692|CD99 molecule-like 2##NM_001184808|CD99L2|83692|CD99 molecule-like 2##NM_001242614|CD99L2|83692|CD99 molecule-like 2##NM_031462|CD99L2|83692|CD99 molecule-like 2##NM_134445|CD99L2|83692|CD99 molecule-like 2##NM_134446|CD99L2|83692|CD99 molecule-like 2##NM_001017980|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##AK096835|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##BC103701|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##BC103702|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##BC105693|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##BC105694|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##AL833596|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##BC110800|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)##AM392666|VMA21|203547|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	1.100061	0.0	
chr2	25647422	25647574	reg1005602.p1	7.144	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-82036	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-82135	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-82170	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	248903	-	AB385496 TSC_hg19_v1_chr2_-_26101159	453631	-	TSC_hg19_v1_chr2_-_26101174 AB084279	453675	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.996949	0.0	denovo_WM_7:49:0.803
chr1	22089363	22089500	reg1003892.p5	7.142	+	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	-93598	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	-111084	-	AB003930 TSC_hg19_v1_chr1_-_21949064	-140394	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	20094	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	20203	-	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	20268	-	AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48	0.997236	0.0	
chr10	15183348	15183474	reg1005373.p2	7.141	+	TSC_hg19_v1_chr10_+_15139363 AK057006 U77664 BC029494	-44048	+	AK314131 BC029034 NM_153244	-44102	-	NM_001097590 NM_006414 NM_183005 TSC_hg19_v1_chr10_+_15139195 AK223418	-44219	+	BC157831 BC171823 TSC_hg19_v1_chr10_-_15197364	13944	-	BT007024 CU675371 DQ890667 DQ893848 BC006376 AK315085 AK094904 AF043325 TSC_hg19_v1_chr10_-_15210693 NM_004808	27250	-	AL050367 BC109302 BC109303 NM_001010924 AY683003 TSC_hg19_v1_chr10_-_15413235	229738	-	AK057006|RPP38|10557|ribonuclease P/MRP 38kDa subunit##U77664|RPP38|10557|ribonuclease P/MRP 38kDa subunit##BC029494|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK314131|C10orf111|221060|chromosome 10 open reading frame 111##BC029034|C10orf111|221060|chromosome 10 open reading frame 111##NM_153244|C10orf111|221060|chromosome 10 open reading frame 111##NM_001097590|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_006414|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_183005|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK223418|RPP38|10557|ribonuclease P/MRP 38kDa subunit##BC157831|LOC100192204|100192204|peptidylprolyl isomerase A (cyclophilin A) pseudogene##BT007024|NMT2|9397|N-myristoyltransferase 2##DQ890667|NMT2|9397|N-myristoyltransferase 2##DQ893848|NMT2|9397|N-myristoyltransferase 2##BC006376|NMT2|9397|N-myristoyltransferase 2##AK315085|NMT2|9397|N-myristoyltransferase 2##AK094904|NMT2|9397|N-myristoyltransferase 2##AF043325|NMT2|9397|N-myristoyltransferase 2##NM_004808|NMT2|9397|N-myristoyltransferase 2##AL050367|FAM171A1|221061|family with sequence similarity 171, member A1##BC109302|FAM171A1|221061|family with sequence similarity 171, member A1##BC109303|FAM171A1|221061|family with sequence similarity 171, member A1##NM_001010924|FAM171A1|221061|family with sequence similarity 171, member A1##AY683003|FAM171A1|221061|family with sequence similarity 171, member A1	0.067166	0.0	
chr9	131201700	131201832	reg1004425.p1	7.141	+	BC011811 TSC_hg19_v1_chr9_+_131191208	-10556	+	AK074519 AK074523 AF177203 TSC_hg19_v1_chr9_+_131185231	-16581	+	TSC_hg19_v1_chr9_+_131183225 BC119698 BC119699	-18511	+	NM_153436 AK301842	15683	+	TSC_hg19_v1_chr9_+_131218395 NM_001242352 NM_001242353 NM_001242354 NM_002540 NM_153432 NM_153435 NM_153439 AK093367 AK301754	16572	+	TSC_hg19_v1_chr9_+_131218424 AY366499	16647	+	BC011811|CERCAM|51148|cerebral endothelial cell adhesion molecule##AK074519|CERCAM|51148|cerebral endothelial cell adhesion molecule##AK074523|CERCAM|51148|cerebral endothelial cell adhesion molecule##AF177203|CERCAM|51148|cerebral endothelial cell adhesion molecule##BC119698|CERCAM|51148|cerebral endothelial cell adhesion molecule##BC119699|CERCAM|51148|cerebral endothelial cell adhesion molecule##NM_153436|ODF2|4957|outer dense fiber of sperm tails 2##AK301842|ODF2|4957|outer dense fiber of sperm tails 2##NM_001242352|ODF2|4957|outer dense fiber of sperm tails 2##NM_001242353|ODF2|4957|outer dense fiber of sperm tails 2##NM_001242354|ODF2|4957|outer dense fiber of sperm tails 2##NM_002540|ODF2|4957|outer dense fiber of sperm tails 2##NM_153432|ODF2|4957|outer dense fiber of sperm tails 2##NM_153435|ODF2|4957|outer dense fiber of sperm tails 2##NM_153439|ODF2|4957|outer dense fiber of sperm tails 2##AK093367|ODF2|4957|outer dense fiber of sperm tails 2##AK301754|ODF2|4957|outer dense fiber of sperm tails 2##AY366499|ODF2|4957|outer dense fiber of sperm tails 2	1.003998	0.0	denovo_WM_7:-7:0.799
chr2	37851829	37851933	reg1003922.p1	7.140	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-280068	+	BC030706 BC012820 AB015982 NM_005813	-307688	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-393035	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	46898	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	47508	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	300551	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.995001	0.0	denovo_WM_7:0:0.481	denovo_WM_7:1:0.343
chr7	104938866	104938997	reg1004437.p2	7.140	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-29448	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-186553	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-257517	+	TSC_hg19_v1_chr7_-_105029265 AB489157	90334	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	90411	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	223730	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.0	0.0	
chr12	42693226	42693406	reg1004166.p2	7.139	+	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-61145	-	CU691510 EU446625 EU446756 AB527838 TSC_hg19_v1_chr12_-_42632024 BC037777 AK127531 AK291355 AK296191 AK294260 NM_001190977	-61281	-	TSC_hg19_v1_chr12_-_42538503 AK125141 NM_001099650 NM_173601 BC030023	-154737	-	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	26559	-	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	26662	+	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	184100	-	NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##EU446625|YAF2|10138|YY1 associated factor 2##EU446756|YAF2|10138|YY1 associated factor 2##BC037777|YAF2|10138|YY1 associated factor 2##AK127531|YAF2|10138|YY1 associated factor 2##AK291355|YAF2|10138|YY1 associated factor 2##AK296191|YAF2|10138|YY1 associated factor 2##AK294260|YAF2|10138|YY1 associated factor 2##NM_001190977|YAF2|10138|YY1 associated factor 2##AK125141|GXYLT1|283464|glucoside xylosyltransferase 1##NM_001099650|GXYLT1|283464|glucoside xylosyltransferase 1##NM_173601|GXYLT1|283464|glucoside xylosyltransferase 1##BC030023|GXYLT1|283464|glucoside xylosyltransferase 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)	0.335837	0.0	denovo_WM_7:39:0.336
chr14	102783418	102783535	reg1005614.p2	7.139	+	TSC_hg19_v1_chr14_-_102771492 AK094747 BC053536 BC026069 AK302349 AK312778 AB022694 NM_014226	-11977	-	TSC_hg19_v1_chr14_+_102606250 NM_001242414 NM_001242415 NM_001242416 NM_001242417 NM_001242418 NM_144574 NM_181291 NM_181308 BC030654 AK090580 AK225852 BC028387 AK090978 AX746714 AK297727 AL832242 AL832500 CU688486 DQ891530 DQ894719 EU831767 EU831845 AF327354 BX248274	-177266	+	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	-177437	-	AK093342 AX748064 TSC_hg19_v1_chr14_+_102783841	301	+	TSC_hg19_v1_chr14_+_102786095 BX248266 NM_018335	2618	+	NM_001177611 AF228148 TSC_hg19_v1_chr14_-_102829228 AF228149 BC000600 AK056112 NM_001177612 NM_032630	45676	-	AK094747|MOK|5891|MOK protein kinase##BC053536|MOK|5891|MOK protein kinase##BC026069|MOK|5891|MOK protein kinase##AK302349|MOK|5891|MOK protein kinase##AK312778|MOK|5891|MOK protein kinase##AB022694|MOK|5891|MOK protein kinase##NM_014226|MOK|5891|MOK protein kinase##NM_001242414|WDR20|91833|WD repeat domain 20##NM_001242415|WDR20|91833|WD repeat domain 20##NM_001242416|WDR20|91833|WD repeat domain 20##NM_001242417|WDR20|91833|WD repeat domain 20##NM_001242418|WDR20|91833|WD repeat domain 20##NM_144574|WDR20|91833|WD repeat domain 20##NM_181291|WDR20|91833|WD repeat domain 20##NM_181308|WDR20|91833|WD repeat domain 20##BC030654|WDR20|91833|WD repeat domain 20##AK090580|WDR20|91833|WD repeat domain 20##AK225852|WDR20|91833|WD repeat domain 20##BC028387|WDR20|91833|WD repeat domain 20##AK090978|WDR20|91833|WD repeat domain 20##AK297727|WDR20|91833|WD repeat domain 20##AL832242|WDR20|91833|WD repeat domain 20##AL832500|WDR20|91833|WD repeat domain 20##DQ891530|WDR20|91833|WD repeat domain 20##DQ894719|WDR20|91833|WD repeat domain 20##EU831767|WDR20|91833|WD repeat domain 20##EU831845|WDR20|91833|WD repeat domain 20##AF327354|WDR20|91833|WD repeat domain 20##BX248274|WDR20|91833|WD repeat domain 20##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK093342|ZNF839|55778|zinc finger protein 839##BX248266|ZNF839|55778|zinc finger protein 839##NM_018335|ZNF839|55778|zinc finger protein 839##NM_001177611|CINP|51550|cyclin-dependent kinase 2 interacting protein##AF228148|CINP|51550|cyclin-dependent kinase 2 interacting protein##AF228149|CINP|51550|cyclin-dependent kinase 2 interacting protein##BC000600|CINP|51550|cyclin-dependent kinase 2 interacting protein##AK056112|CINP|51550|cyclin-dependent kinase 2 interacting protein##NM_001177612|CINP|51550|cyclin-dependent kinase 2 interacting protein##NM_032630|CINP|51550|cyclin-dependent kinase 2 interacting protein	0.998963	0.033542	denovo_WM_7:40:0.314	denovo_WM_7:41:0.314	denovo_WM_7:42:0.314
chr17	18824241	18824391	reg1005229.p1	7.139	+	NM_001243940 AB007851 BC101670 BC101672 BC143475	-55495	+	TSC_hg19_v1_chr17_+_18761445 BC106050 AK304544	-62846	+	NM_001243941 NM_002767 TSC_hg19_v1_chr17_+_18761443 AK313087	-62904	+	AK057946 NM_001042450 NM_152351 AK298345 BC062617 BC034380	31188	+	TSC_hg19_v1_chr17_-_18908078 NM_001039999	83763	-	BT019981 CR541941 CR541966 AB528891 CU687638 BC035856 U52518 BC063035 NM_006613	125970	-	NM_001243940|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AB007851|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101670|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101672|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC143475|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC106050|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK304544|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243941|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_002767|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK313087|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK057946|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001042450|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_152351|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##AK298345|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC062617|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC034380|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001039999|FAM83G|644815|family with sequence similarity 83, member G##BT019981|GRAP|10750|GRB2-related adaptor protein##CR541941|GRAP|10750|GRB2-related adaptor protein##CR541966|GRAP|10750|GRB2-related adaptor protein##BC035856|GRAP|10750|GRB2-related adaptor protein##U52518|GRAP|10750|GRB2-related adaptor protein##BC063035|GRAP|10750|GRB2-related adaptor protein##NM_006613|GRAP|10750|GRB2-related adaptor protein	0.987598	0.0	denovo_WM_7:0:0.584	denovo_WM_7:-3:0.270
chr3	8707241	8707418	reg1004074.p1	7.138	+	TSC_hg19_v1_chr3_-_8693765 AB024705 NM_015931 BC052614	-13575	-	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	-163748	+	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	-163814	+	AK291892 NM_001234 NM_033337 BC069368 AF036365 BC102033 BC102036 BC102037 Y14747 CU686780 AF043101	68196	+	X64878 TSC_hg19_v1_chr3_-_8811121 AK313830	103757	-	TSC_hg19_v1_chr3_-_8811300 NM_000916	103955	-	AB024705|C3orf32|51066|chromosome 3 open reading frame 32##NM_015931|C3orf32|51066|chromosome 3 open reading frame 32##BC052614|C3orf32|51066|chromosome 3 open reading frame 32##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK291892|CAV3|859|caveolin 3##NM_001234|CAV3|859|caveolin 3##NM_033337|CAV3|859|caveolin 3##BC069368|CAV3|859|caveolin 3##AF036365|CAV3|859|caveolin 3##BC102033|CAV3|859|caveolin 3##BC102036|CAV3|859|caveolin 3##BC102037|CAV3|859|caveolin 3##Y14747|CAV3|859|caveolin 3##AF043101|CAV3|859|caveolin 3##X64878|OXTR|5021|oxytocin receptor##AK313830|OXTR|5021|oxytocin receptor##NM_000916|OXTR|5021|oxytocin receptor	0.0	0.0	
chr4	71796407	71796542	reg1004308.p1	7.138	+	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	-28361	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-90837	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-90897	-	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	62833	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	62997	+	TSC_hg19_v1_chr4_+_72052481 AF011390 NM_001098484 NM_001134742 AK307594 AF157492	256249	+	NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase##AF011390|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001098484|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001134742|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK307594|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF157492|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	1.957582	0.0	denovo_WM_7:22:0.965	denovo_WM_7:-75:0.699	denovo_WM_7:-76:0.270
chr1	31522598	31522695	reg1003043.p2	7.137	+	AB385258 AF248634 NM_014654 TSC_hg19_v1_chr1_-_31381606	-141098	-	TSC_hg19_v1_chr1_-_31345363 AL049426	-177248	-	TSC_hg19_v1_chr1_-_31230697 NM_006762	-291956	-	TSC_hg19_v1_chr1_-_31538543 BC013398 D43951 AK291779 AK300457 AF315592 AK096476 AK222605	15871	-	TSC_hg19_v1_chr1_-_31538565 GQ334687 GQ334688 NM_001020658 NM_014676 AK294477	15946	-	BX647437 TSC_hg19_v1_chr1_-_31538801	16137	-	AF248634|SDC3|9672|syndecan 3##NM_014654|SDC3|9672|syndecan 3##AL049426|SDC3|9672|syndecan 3##NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##BC013398|PUM1|9698|pumilio homolog 1 (Drosophila)##D43951|PUM1|9698|pumilio homolog 1 (Drosophila)##AK291779|PUM1|9698|pumilio homolog 1 (Drosophila)##AK300457|PUM1|9698|pumilio homolog 1 (Drosophila)##AF315592|PUM1|9698|pumilio homolog 1 (Drosophila)##AK096476|PUM1|9698|pumilio homolog 1 (Drosophila)##AK222605|PUM1|9698|pumilio homolog 1 (Drosophila)##NM_001020658|PUM1|9698|pumilio homolog 1 (Drosophila)##NM_014676|PUM1|9698|pumilio homolog 1 (Drosophila)##AK294477|PUM1|9698|pumilio homolog 1 (Drosophila)##BX647437|PUM1|9698|pumilio homolog 1 (Drosophila)	0.998661	0.0	
chr10	75518759	75518882	reg1004383.p1	7.136	+	TSC_hg19_v1_chr10_+_75504148 AL832110 AK299826 AK309918	-14654	+	AK303085 AK298598 TSC_hg19_v1_chr10_+_75504129 NM_004922 NM_198597 AK316451 BC018928	-14689	+	TSC_hg19_v1_chr10_-_75490231 BC020053 BC046139 BC063124 BC099910 AK294783	-28576	-	TSC_hg19_v1_chr10_+_75532064 BC036037 NM_173540 BC100994 BC100995 BC100996 BC100997	13233	+	TSC_hg19_v1_chr10_+_75532065 AK314944 DQ894378 EU176260	13257	+	TSC_hg19_v1_chr10_+_75532277 AK095482	13466	+	AL832110|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK299826|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK309918|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK303085|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK298598|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##NM_004922|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##NM_198597|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK316451|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##BC018928|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##BC046139|BMS1P4|729096|BMS1 pseudogene 4##BC063124|BMS1P4|729096|BMS1 pseudogene 4##BC099910|BMS1P4|729096|BMS1 pseudogene 4##AK294783|BMS1P4|729096|BMS1 pseudogene 4##BC036037|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##NM_173540|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100994|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100995|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100996|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100997|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##AK314944|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##DQ894378|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##EU176260|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##AK095482|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)	0.0	0.0	
chr8	11344444	11344574	reg1005097.p2	7.136	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-20280	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-139505	-	AJ291677 NM_054028 BC131696	-155999	+	S76617 NM_001715 BC018703 BC004473 BC038555	7084	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	217211	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	282759	+	AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)	0.992875	0.0	
chr10	33250553	33250706	reg1003565.p1	7.135	+	TSC_hg19_v1_chr10_-_33247203 NM_002211	-3392	-	TSC_hg19_v1_chr10_-_33247146 BC020057 AK291697 BX537407	-3490	-	TSC_hg19_v1_chr10_-_33246826 NM_133376	-3795	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	372824	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	373185	-	TSC_hg19_v1_chr10_-_33623996 BX648025	373369	-	NM_002211|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##BC020057|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##AK291697|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##BX537407|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##NM_133376|ITGB1|3688|integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##BX648025|NRP1|8829|neuropilin 1	1.994236	0.0	denovo_WM_7:58:0.561	denovo_WM_7:59:0.281	denovo_WM_7:73:0.332	denovo_WM_7:74:0.612
chr6	84880110	84880217	reg1004517.p1	7.135	+	TSC_hg19_v1_chr6_+_84743459 AK090775 AX746611 NM_138409 BC010003 AK307078 AK292736 BC039855	-136757	+	TSC_hg19_v1_chr6_+_84569438 AB527313 AM393033	-310699	+	TSC_hg19_v1_chr6_+_84569407 AK313146 BC025380 AL832113	-310761	+	AB023226 AK308190 BC063632 NM_014895 TSC_hg19_v1_chr6_-_84937334	57161	-	TSC_hg19_v1_chr6_-_85472330 AJ010278	592162	-	AK310179 BC040697 TSC_hg19_v1_chr6_-_85473172	593007	-	AK090775|MRAP2|112609|melanocortin 2 receptor accessory protein 2##NM_138409|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC010003|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK307078|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK292736|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC039855|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AM393033|CYB5R4|51167|cytochrome b5 reductase 4##AK313146|CYB5R4|51167|cytochrome b5 reductase 4##BC025380|CYB5R4|51167|cytochrome b5 reductase 4##AL832113|CYB5R4|51167|cytochrome b5 reductase 4##AB023226|KIAA1009|22832|KIAA1009##AK308190|KIAA1009|22832|KIAA1009##BC063632|KIAA1009|22832|KIAA1009##NM_014895|KIAA1009|22832|KIAA1009##AJ010278|TBX18|9096|T-box 18##AK310179|TBX18|9096|T-box 18##BC040697|TBX18|9096|T-box 18	1.984977	0.0	denovo_WM_7:-48:0.977	denovo_WM_7:-63:0.977
chr20	45035470	45035606	reg1006560.p1	7.134	+	TSC_hg19_v1_chr20_-_45035255 AK299318 AL833406 BX648819 NM_133171 NM_182764	-239	-	TSC_hg19_v1_chr20_-_45035244 AK057032	-296	-	AB058737 TSC_hg19_v1_chr20_-_45035232	-322	-	TSC_hg19_v1_chr20_-_45061554 AK293861	26090	-	AL831934 TSC_hg19_v1_chr20_-_45087948	52393	-	AK001331 AK095611 BC024177 NM_018102 NM_199441 BC026321 TSC_hg19_v1_chr20_-_45142199	106657	-	AK299318|ELMO2|63916|engulfment and cell motility 2##AL833406|ELMO2|63916|engulfment and cell motility 2##BX648819|ELMO2|63916|engulfment and cell motility 2##NM_133171|ELMO2|63916|engulfment and cell motility 2##NM_182764|ELMO2|63916|engulfment and cell motility 2##AK057032|ELMO2|63916|engulfment and cell motility 2##AB058737|ELMO2|63916|engulfment and cell motility 2##AK293861|ELMO2|63916|engulfment and cell motility 2##AL831934|ZNF663|100130934|zinc finger protein 663##AK001331|ZNF334|55713|zinc finger protein 334##AK095611|ZNF334|55713|zinc finger protein 334##BC024177|ZNF334|55713|zinc finger protein 334##NM_018102|ZNF334|55713|zinc finger protein 334##NM_199441|ZNF334|55713|zinc finger protein 334##BC026321|ZNF334|55713|zinc finger protein 334	0.96464	0.0	denovo_WM_7:3:0.909
chr7	73688949	73689088	reg1002937.p2	7.134	+	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	-20282	-	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	-20307	-	TSC_hg19_v1_chr7_+_73624361 AF252613	-64664	+	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	14769	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	179146	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	179290	+	NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AF252613|LAT2|7462|linker for activation of T cells family, member 2##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1	0.999978	0.0	denovo_WM_7:96:0.457	denovo_WM_7:97:0.457
chr9	126657282	126657407	reg1004680.p1	7.134	+	NM_173689 AK123000 DQ426866 AY720432	-538851	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-626456	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-626524	-	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	34967	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	116539	+	TSC_hg19_v1_chr9_+_126774046 BC034458	116727	+	NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC034458|LHX2|9355|LIM homeobox 2	0.998772	0.0	denovo_WM_7:1:0.518	denovo_WM_7:2:0.462
chr1	202896451	202896631	reg1003613.p1	7.133	+	AF306689 TSC_hg19_v1_chr1_-_202896398 AK027656 NM_021633	-157	-	TSC_hg19_v1_chr1_-_202896338 AF190900 AK223072 BC003183 BC004175	-208	-	AB464114 BT007133 U74324 TSC_hg19_v1_chr1_-_202858251 S78873 BC018488 BC037392 AK311900 AK223538 NM_002871	-38237	-	TSC_hg19_v1_chr1_-_202927406 AY424279 AF125179 AF125180 AK222503 AF151803	30797	-	BC010743 TSC_hg19_v1_chr1_-_202927413 BC001594	30872	-	AK001484 AK058114 TSC_hg19_v1_chr1_-_202927441	30906	-	AF306689|KLHL12|59349|kelch-like 12 (Drosophila)##AK027656|KLHL12|59349|kelch-like 12 (Drosophila)##NM_021633|KLHL12|59349|kelch-like 12 (Drosophila)##AF190900|KLHL12|59349|kelch-like 12 (Drosophila)##AK223072|KLHL12|59349|kelch-like 12 (Drosophila)##BC003183|KLHL12|59349|kelch-like 12 (Drosophila)##BC004175|KLHL12|59349|kelch-like 12 (Drosophila)##BT007133|RABIF|5877|RAB interacting factor##U74324|RABIF|5877|RAB interacting factor##S78873|RABIF|5877|RAB interacting factor##BC018488|RABIF|5877|RAB interacting factor##BC037392|RABIF|5877|RAB interacting factor##AK311900|RABIF|5877|RAB interacting factor##AK223538|RABIF|5877|RAB interacting factor##NM_002871|RABIF|5877|RAB interacting factor##AY424279|ADIPOR1|51094|adiponectin receptor 1##AF125179|ADIPOR1|51094|adiponectin receptor 1##AK222503|ADIPOR1|51094|adiponectin receptor 1##AF151803|ADIPOR1|51094|adiponectin receptor 1##BC010743|ADIPOR1|51094|adiponectin receptor 1##BC001594|ADIPOR1|51094|adiponectin receptor 1##AK001484|ADIPOR1|51094|adiponectin receptor 1##AK058114|ADIPOR1|51094|adiponectin receptor 1	0.0	0.0	
chr19	8480550	8480730	reg1004750.p1	7.133	+	TSC_hg19_v1_chr19_+_8478188 NM_001005415 NM_001005416 NM_016496 AF151074	-2412	+	TSC_hg19_v1_chr19_-_8455589 BC014506	-25068	-	TSC_hg19_v1_chr19_+_8455285 AK297498 AK225642 AK225036 D38516 X79780 BC110081 AB590872 AF498947 BT019535 BT019536 CR536494 CR541691 GQ129215 GQ129216	-25358	+	TSC_hg19_v1_chr19_+_8509599 AF061832	28982	+	NM_005968 NM_031203 TSC_hg19_v1_chr19_+_8509858 BC000138 AK293612	29190	+	TSC_hg19_v1_chr19_+_8509860 AK309659	29223	+	NM_001005415|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##NM_001005416|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##NM_016496|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##AF151074|MARCH2|51257|membrane-associated ring finger (C3HC4) 2##BC014506|LOC100507567|100507567|uncharacterized LOC100507567##AK297498|RAB11B|9230|RAB11B, member RAS oncogene family##AK225642|RAB11B|9230|RAB11B, member RAS oncogene family##AK225036|RAB11B|9230|RAB11B, member RAS oncogene family##D38516|RAB11B|9230|RAB11B, member RAS oncogene family##X79780|RAB11B|9230|RAB11B, member RAS oncogene family##BC110081|RAB11B|9230|RAB11B, member RAS oncogene family##AF498947|RAB11B|9230|RAB11B, member RAS oncogene family##BT019535|RAB11B|9230|RAB11B, member RAS oncogene family##BT019536|RAB11B|9230|RAB11B, member RAS oncogene family##CR536494|RAB11B|9230|RAB11B, member RAS oncogene family##CR541691|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129215|RAB11B|9230|RAB11B, member RAS oncogene family##GQ129216|RAB11B|9230|RAB11B, member RAS oncogene family##AF061832|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##NM_005968|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##NM_031203|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##BC000138|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##AK309659|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M	1.983205	0.0	denovo_WM_7:-7:0.553	denovo_WM_7:-25:0.448	denovo_WM_7:-26:0.337
chr20	48575341	48575498	reg1005065.p2	7.133	+	BX640603 TSC_hg19_v1_chr20_+_48552935 BC066919 AF265215 AK301731 BC013695 AB587558 BT006795	-22476	+	TSC_hg19_v1_chr20_+_48552933 AK315638	-22488	+	TSC_hg19_v1_chr20_+_48552913 AK091976 AK297188 NM_018683	-22505	+	TSC_hg19_v1_chr20_+_48599515 NM_005985 AK313228 BC012910 AF125377 DQ891599 DQ894793 AB464226 AF131208 CU680444	24134	+	BT007382 CU674232 HQ448675 TSC_hg19_v1_chr20_-_48729684 BC000468 BX647511 BX648147 NM_001032288	154271	-	TSC_hg19_v1_chr20_-_48732483 AK314754 NM_022442 BC005215 NM_021988 NM_199144	157069	-	BX640603|RNF114|55905|ring finger protein 114##BC066919|RNF114|55905|ring finger protein 114##AF265215|RNF114|55905|ring finger protein 114##AK301731|RNF114|55905|ring finger protein 114##BC013695|RNF114|55905|ring finger protein 114##BT006795|RNF114|55905|ring finger protein 114##AK315638|RNF114|55905|ring finger protein 114##AK091976|RNF114|55905|ring finger protein 114##AK297188|RNF114|55905|ring finger protein 114##NM_018683|RNF114|55905|ring finger protein 114##NM_005985|SNAI1|6615|snail homolog 1 (Drosophila)##AK313228|SNAI1|6615|snail homolog 1 (Drosophila)##BC012910|SNAI1|6615|snail homolog 1 (Drosophila)##AF125377|SNAI1|6615|snail homolog 1 (Drosophila)##DQ891599|SNAI1|6615|snail homolog 1 (Drosophila)##DQ894793|SNAI1|6615|snail homolog 1 (Drosophila)##AF131208|SNAI1|6615|snail homolog 1 (Drosophila)##BT007382|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##HQ448675|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC000468|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX647511|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX648147|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_001032288|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##AK314754|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_022442|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC005215|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_021988|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_199144|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1	0.999729	0.0	denovo_WM_7:42:0.307	denovo_WM_7:43:0.307	denovo_WM_7:44:0.307
chr1	221242815	221242955	reg1003835.p2	7.130	+	TSC_hg19_v1_chr1_+_221053066 AB463713 DQ893305 DQ896761	-189786	+	TSC_hg19_v1_chr1_+_221052845 AK127923 AK313298 BC033808	-189971	+	TSC_hg19_v1_chr1_+_221052739 AK056326 NM_021958 BC007294 AB208812 M60721	-190124	+	NM_144728	667916	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	672523	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	672545	-	DQ893305|HLX|3142|H2.0-like homeobox##DQ896761|HLX|3142|H2.0-like homeobox##AK127923|HLX|3142|H2.0-like homeobox##AK313298|HLX|3142|H2.0-like homeobox##BC033808|HLX|3142|H2.0-like homeobox##AK056326|HLX|3142|H2.0-like homeobox##NM_021958|HLX|3142|H2.0-like homeobox##BC007294|HLX|3142|H2.0-like homeobox##AB208812|HLX|3142|H2.0-like homeobox##M60721|HLX|3142|H2.0-like homeobox##NM_144728|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10	0.067701	0.0	
chr16	28484992	28485160	reg1001000.p1	7.130	+	BC157842 AK292155 NM_001199142	-47358	-	AK055366 AK299421 AK303790 AK304500 TSC_hg19_v1_chr16_-_28415162 AK301233 AK301183 NM_001099661 BC107692 NM_001037808 NM_003752	-69919	-	DQ891632 DQ894822 AB527254 BC157849 BC071705 AK000739 AK293264 AY762099 TSC_hg19_v1_chr16_-_28415133 BC000533 BC001571	-70035	-	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	18164	-	NM_001042432	18546	-	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	20886	+	BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK055366|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK299421|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK303790|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK304500|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301233|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301183|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001099661|EIF3CL|728689|eukaryotic translation initiation factor 3, subunit C-like##BC107692|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001037808|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_003752|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ891632|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ894822|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC157849|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC071705|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK000739|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK293264|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AY762099|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC000533|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC001571|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor	0.153504	0.0	
chr2	65728395	65728575	reg1005650.p2	7.130	+	TSC_hg19_v1_chr2_+_65663818 AK131224 BC033059	-64648	+	TSC_hg19_v1_chr2_-_65659661 BC111495 NM_181784	-68809	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	-69273	-	AL832770 BC043503 NM_002398	934038	+	BC036511 AK314949 TSC_hg19_v1_chr2_+_66662903 U85707 AB527915	934355	+	TSC_hg19_v1_chr2_+_66666452 AK297109	937965	+	AK131224|FLJ16124|440867|FLJ16124 protein##BC033059|FLJ16124|440867|FLJ16124 protein##BC111495|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_181784|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AL832770|MEIS1|4211|Meis homeobox 1##BC043503|MEIS1|4211|Meis homeobox 1##NM_002398|MEIS1|4211|Meis homeobox 1##BC036511|MEIS1|4211|Meis homeobox 1##AK314949|MEIS1|4211|Meis homeobox 1##U85707|MEIS1|4211|Meis homeobox 1##AK297109|MEIS1|4211|Meis homeobox 1	1.412113	0.0	denovo_WM_7:-6:0.306	denovo_WM_7:18:0.432	denovo_WM_7:19:0.432
chr6	90014282	90014420	reg1005163.p1	7.130	+	AK313609 NM_002042	-86856	-	TSC_hg19_v1_chr6_+_89855838 BC035036 NM_001010853 AK302464 BC045583	-158470	+	AF449428 AB527997 CU692392 TSC_hg19_v1_chr6_-_89827756 AK314008 BC021715 NM_080743	-186649	-	BC130352 BC130354 M86868 NM_002043	10600	-	AB464335 DQ895144 EU176317 AF161502 U93243 TSC_hg19_v1_chr6_-_90062340	47965	-	AJ245898 TSC_hg19_v1_chr6_-_90062433 AF151834	48042	-	AK313609|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##NM_002042|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##BC035036|PM20D2|135293|peptidase M20 domain containing 2##NM_001010853|PM20D2|135293|peptidase M20 domain containing 2##AK302464|PM20D2|135293|peptidase M20 domain containing 2##BC045583|PM20D2|135293|peptidase M20 domain containing 2##AF449428|SRSF12|135295|serine/arginine-rich splicing factor 12##AK314008|SRSF12|135295|serine/arginine-rich splicing factor 12##BC021715|SRSF12|135295|serine/arginine-rich splicing factor 12##NM_080743|SRSF12|135295|serine/arginine-rich splicing factor 12##BC130352|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##BC130354|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##M86868|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##NM_002043|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##DQ895144|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##EU176317|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF161502|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##U93243|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AJ245898|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF151834|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U	1.797496	0.0	denovo_WM_7:-20:0.657	denovo_WM_7:-35:0.687
chr8	42597004	42597138	reg1004451.p3	7.130	+	BC069681 BC069703 BC069788 NM_000749 Y08417 U62438 CU686976 CU686982	-44446	+	TSC_hg19_v1_chr8_-_42397069 BC028600 NM_006749	-200010	-	TSC_hg19_v1_chr8_+_42396791 NM_138436 BC013035 NM_001135674 NM_001135675	-200244	+	NM_001199279 NM_004198	26857	-	AL832077 BC021721 AK223231 TSC_hg19_v1_chr8_-_42698469 AK001339 NM_018105 NM_199003	101390	-	BC039461 BC032393 BC013422 AK225086 AL136620 AK225568 AK027748 AK090864 AX746655 BC058289 BC044566 NM_001160223 NM_001160224 NM_001160225 NM_030954	154672	-	BC069681|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069703|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069788|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##NM_000749|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##Y08417|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##U62438|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC028600|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_006749|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_138436|C8orf40|114926|chromosome 8 open reading frame 40##BC013035|C8orf40|114926|chromosome 8 open reading frame 40##NM_001135674|C8orf40|114926|chromosome 8 open reading frame 40##NM_001135675|C8orf40|114926|chromosome 8 open reading frame 40##NM_001199279|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##NM_004198|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##AL832077|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC021721|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK223231|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK001339|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_018105|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_199003|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC039461|RNF170|81790|ring finger protein 170##BC032393|RNF170|81790|ring finger protein 170##BC013422|RNF170|81790|ring finger protein 170##AK225086|RNF170|81790|ring finger protein 170##AL136620|RNF170|81790|ring finger protein 170##AK225568|RNF170|81790|ring finger protein 170##AK027748|RNF170|81790|ring finger protein 170##AK090864|RNF170|81790|ring finger protein 170##BC058289|RNF170|81790|ring finger protein 170##BC044566|RNF170|81790|ring finger protein 170##NM_001160223|RNF170|81790|ring finger protein 170##NM_001160224|RNF170|81790|ring finger protein 170##NM_001160225|RNF170|81790|ring finger protein 170##NM_030954|RNF170|81790|ring finger protein 170	0.960075	0.0	denovo_WM_7:0:0.848
chr9	70648990	70649170	reg1003915.p1	7.130	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-158904	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-158930	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-158940	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	207812	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	268744	+	BC033073 NM_021965	322734	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.992723	0.0	denovo_WM_7:82:0.479	denovo_WM_7:83:0.479
chr1	241694773	241694892	reg1003478.p1	7.129	+	AK312415 TSC_hg19_v1_chr1_-_241683076 NM_000143	-11752	-	TSC_hg19_v1_chr1_-_241683023 BT009839 AB590519 EU176358 BC017444 BC003108 U48857 U59309	-11800	-	TSC_hg19_v1_chr1_-_241520469 BC022009 NM_002924	-174360	-	NM_003679 AK310937 BC005297 AK291558 AF056032 Y13153 CU675097	755	+	BC117360 NM_001821 X64728	104334	-	TSC_hg19_v1_chr1_-_241803669 BC051900 AF140242 BC073872 BC062622 AF303588 BC036773 BC026242 NM_014322	108643	-	AK312415|FH|2271|fumarate hydratase##NM_000143|FH|2271|fumarate hydratase##BT009839|FH|2271|fumarate hydratase##EU176358|FH|2271|fumarate hydratase##BC017444|FH|2271|fumarate hydratase##BC003108|FH|2271|fumarate hydratase##U48857|FH|2271|fumarate hydratase##U59309|FH|2271|fumarate hydratase##BC022009|RGS7|6000|regulator of G-protein signaling 7##NM_002924|RGS7|6000|regulator of G-protein signaling 7##NM_003679|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##AK310937|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##BC005297|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##AK291558|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##AF056032|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##Y13153|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##BC117360|CHML|1122|choroideremia-like (Rab escort protein 2)##NM_001821|CHML|1122|choroideremia-like (Rab escort protein 2)##X64728|CHML|1122|choroideremia-like (Rab escort protein 2)##BC051900|OPN3|23596|opsin 3##AF140242|OPN3|23596|opsin 3##BC073872|OPN3|23596|opsin 3##BC062622|OPN3|23596|opsin 3##AF303588|OPN3|23596|opsin 3##BC036773|OPN3|23596|opsin 3##NM_014322|OPN3|23596|opsin 3	0.0	0.812476	CTCF.p2:-52:0.812
chr16	15737324	15737504	reg1005364.p1	7.129	+	BC033900 NM_001143979	-291	+	BC137165 BC137170 BC144514 BC144515 TSC_hg19_v1_chr16_-_15737004 AK302667 AK095840 BC064914 NM_001184998 NM_001184999 NM_014647	-421	-	BC023603 NM_001142469	-141292	+	NM_017668 BC001421 TSC_hg19_v1_chr16_+_15744101 AK000108 AK025815	6693	+	BX641087 TSC_hg19_v1_chr16_-_15833973	96541	-	TSC_hg19_v1_chr16_-_15835382 D10667	98033	-	BC033900|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##NM_001143979|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC137165|KIAA0430|9665|KIAA0430##BC137170|KIAA0430|9665|KIAA0430##BC144514|KIAA0430|9665|KIAA0430##BC144515|KIAA0430|9665|KIAA0430##AK302667|KIAA0430|9665|KIAA0430##AK095840|KIAA0430|9665|KIAA0430##BC064914|KIAA0430|9665|KIAA0430##NM_001184998|KIAA0430|9665|KIAA0430##NM_001184999|KIAA0430|9665|KIAA0430##NM_014647|KIAA0430|9665|KIAA0430##BC023603|C16orf45|89927|chromosome 16 open reading frame 45##NM_001142469|C16orf45|89927|chromosome 16 open reading frame 45##NM_017668|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC001421|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK000108|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK025815|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BX641087|MYH11|4629|myosin, heavy chain 11, smooth muscle##D10667|MYH11|4629|myosin, heavy chain 11, smooth muscle	0.939547	0.0	denovo_WM_7:20:0.901
chr8	126447087	126447240	reg1005213.p2	7.129	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-4584	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-343066	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-343106	-	TSC_hg19_v1_chr8_-_126963395 BX648371	516250	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1123392	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	1123561	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	0.993117	0.0	denovo_WM_7:11:0.481	denovo_WM_7:13:0.380
chr12	96850378	96850558	reg1005685.p3	7.128	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-56151	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	-56485	-	TSC_hg19_v1_chr12_+_96588254 BC017371	-262201	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	450563	+	BC027605 NM_001135175	450775	+	TSC_hg19_v1_chr12_-_98897622 AK126817	2047159	-	AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK126817|LOC643770|643770|uncharacterized LOC643770	0.0	0.0	
chr15	39543830	39543958	reg1004346.p1	7.126	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	-969	+	AK093014 AX747856 BC119016 BC119810 NM_207444	-555096	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	-686963	-	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	329435	+	AK093308 AX748045 BC045191 NM_152597	531134	-	AK091251 TSC_hg19_v1_chr15_+_40075106	531212	+	BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1	0.071058	0.0	
chr17	73319788	73319964	reg1001814.p3	7.124	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-34347	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-34404	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-52562	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	69901	-	AK091010 TSC_hg19_v1_chr17_-_73401721	81768	-	TSC_hg19_v1_chr17_-_73401738 BC000631	81858	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	1.026667	0.0	denovo_WM_7:19:0.397	denovo_WM_7:20:0.397
chr10	3852369	3852549	reg1000602.p1	7.123	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-24950	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-25148	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-637454	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1015959	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1153055	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1153164	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.0	0.0	
chr10	98182868	98182985	reg1004439.p1	7.123	+	AF367761 NM_001040102 NM_001040103 NM_033207	-63852	-	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	-118758	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-151683	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	90637	-	AK075451 TSC_hg19_v1_chr10_-_98290333	107411	-	AK074824 TSC_hg19_v1_chr10_-_98321895	138934	-	AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2##AK075451|TM9SF3|56889|transmembrane 9 superfamily member 3##AK074824|TM9SF3|56889|transmembrane 9 superfamily member 3	0.989846	0.0	denovo_WM_7:-29:0.233	denovo_WM_7:-30:0.233	denovo_WM_7:-31:0.234	denovo_WM_7:-32:0.234
chr11	67194418	67194597	reg1005596.p1	7.123	+	AK098311 TSC_hg19_v1_chr11_-_67188655 AK127616	-5840	-	TSC_hg19_v1_chr11_+_67183148 AK294035 AK295331 EF560746 NM_001166222 NM_020811	-11357	+	AK126131 TSC_hg19_v1_chr11_+_67171400 BC062999 NM_198517 BC047319 BC036873 BC022202	-22971	+	TSC_hg19_v1_chr11_+_67195964 NM_003952 BC136564 BC000094 AK297527 AB019245 AB208827 BC006106 AF099739 AB016869 AF076931 AB529007	1451	+	BC113859 BC114467 AK312022 NM_005608 X81422 TSC_hg19_v1_chr11_-_67205154	10645	-	TSC_hg19_v1_chr11_-_67210939 BC006449 AK315399 AK295782	16422	-	AK098311|PPP1CA|5499|protein phosphatase 1, catalytic subunit, alpha isozyme##AK127616|PPP1CA|5499|protein phosphatase 1, catalytic subunit, alpha isozyme##AK294035|CARNS1|57571|carnosine synthase 1##AK295331|CARNS1|57571|carnosine synthase 1##EF560746|CARNS1|57571|carnosine synthase 1##NM_001166222|CARNS1|57571|carnosine synthase 1##NM_020811|CARNS1|57571|carnosine synthase 1##BC062999|TBC1D10C|374403|TBC1 domain family, member 10C##NM_198517|TBC1D10C|374403|TBC1 domain family, member 10C##BC047319|TBC1D10C|374403|TBC1 domain family, member 10C##BC036873|TBC1D10C|374403|TBC1 domain family, member 10C##BC022202|TBC1D10C|374403|TBC1 domain family, member 10C##NM_003952|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##BC136564|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##BC000094|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##AK297527|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##AB019245|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##AB208827|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##BC006106|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##AF099739|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##AB016869|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##AF076931|RPS6KB2|6199|ribosomal protein S6 kinase, 70kDa, polypeptide 2##BC113859|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##BC114467|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##AK312022|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##NM_005608|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##X81422|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##BC006449|CORO1B|57175|coronin, actin binding protein, 1B##AK315399|CORO1B|57175|coronin, actin binding protein, 1B##AK295782|CORO1B|57175|coronin, actin binding protein, 1B	2.811078	0.0	denovo_WM_7:20:0.410	denovo_WM_7:25:0.265
chr1	211555296	211555415	reg1004530.p1	7.122	+	BC029600 NM_145759	-35650	+	TSC_hg19_v1_chr1_+_211500174 AK295766 AK303286 AB000509	-55168	+	NM_001033910 TSC_hg19_v1_chr1_+_211500158	-55202	+	TSC_hg19_v1_chr1_+_211556144 AK130858	792	+	TSC_hg19_v1_chr1_+_211556168 BC005997	813	+	AY191519 NM_001164688 NM_183059	110903	-	BC029600|TRAF5|7188|TNF receptor-associated factor 5##NM_145759|TRAF5|7188|TNF receptor-associated factor 5##AK295766|TRAF5|7188|TNF receptor-associated factor 5##AK303286|TRAF5|7188|TNF receptor-associated factor 5##AB000509|TRAF5|7188|TNF receptor-associated factor 5##NM_001033910|TRAF5|7188|TNF receptor-associated factor 5##AK130858|LINC00467|84791|long intergenic non-protein coding RNA 467##BC005997|LINC00467|84791|long intergenic non-protein coding RNA 467##AY191519|RD3|343035|retinal degeneration 3##NM_001164688|RD3|343035|retinal degeneration 3##NM_183059|RD3|343035|retinal degeneration 3	0.018676	0.0	
chr1	6523806	6523912	reg1004909.p1	7.122	+	TSC_hg19_v1_chr1_+_6484835 AL136880 NM_031475	-39028	+	AB463714 BC132698 BC136963 BC142687 TSC_hg19_v1_chr1_-_6479976 AK091122 NM_019089	-43929	-	BC017365 AK057168 NM_007274	-70060	-	U83597 U83598 U75380 U75381 U94512 AB308321 AB590587 HQ258574 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 TSC_hg19_v1_chr1_-_6526206 AF026070 AF026071 BC117189 BC143886 Y09392 AY358309 NM_001039664 NM_003790 NM_148965 NM_148966 NM_148967 NM_148970 U74611	2343	-	TSC_hg19_v1_chr1_-_6545530 AK299523	21666	-	AB097001 NM_001042665 TSC_hg19_v1_chr1_-_6546016	22155	-	AL136880|ESPN|83715|espin##NM_031475|ESPN|83715|espin##BC132698|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC136963|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC142687|HES2|54626|hairy and enhancer of split 2 (Drosophila)##AK091122|HES2|54626|hairy and enhancer of split 2 (Drosophila)##NM_019089|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC017365|ACOT7|11332|acyl-CoA thioesterase 7##AK057168|ACOT7|11332|acyl-CoA thioesterase 7##NM_007274|ACOT7|11332|acyl-CoA thioesterase 7##U83597|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U83598|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U75380|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U75381|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94512|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AB308321|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##HQ258574|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U72763|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U78029|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94501|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94502|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94503|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94504|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94505|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94506|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94507|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94508|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94509|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94510|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AF026070|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AF026071|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##BC117189|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##BC143886|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##Y09392|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AY358309|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_001039664|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_003790|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148965|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148966|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148967|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148970|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U74611|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AK299523|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##AB097001|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##NM_001042665|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	1.977682	0.0	denovo_WM_7:-50:0.969	denovo_WM_7:-65:0.968
chr13	43598361	43598499	reg1005854.p3	7.121	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	-728	+	AF126743 AY248898 NM_013238	-1081	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	-32060	-	BC024178 NM_001127615	605180	-	TSC_hg19_v1_chr13_-_44361107 BC068521 NM_001242863 NM_017993	762653	-	NM_001128303	854989	+	BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC024178|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001127615|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##BC068521|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001242863|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_017993|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001128303|LACC1|144811|laccase (multicopper oxidoreductase) domain containing 1	1.05008	0.0	
chr17	53045248	53045427	reg1005502.p1	7.121	+	TSC_hg19_v1_chr17_+_52978217 NM_005486 AK001893 AK309164 AK225351 AJ010071 AK303912 AK300823 AK303913 AK315039 AK315907 AK223125 BC029396 AB590855	-67181	+	NM_032559 AK057272 AF333335 BC033802 AK302262 AK308265 CU689754	-1145022	+	NM_001243552	-1982458	+	TSC_hg19_v1_chr17_-_53046016 AK293851 CR541837 DQ893136 DQ896418 AF044321 BC005895 AK295381 NM_001162861 NM_001162862 NM_004375	680	-	TSC_hg19_v1_chr17_+_53046125 AK122865 NM_178509 BC125116 BC041485	790	+	NM_002126 TSC_hg19_v1_chr17_+_53342320	296995	+	NM_005486|TOM1L1|10040|target of myb1 (chicken)-like 1##AK001893|TOM1L1|10040|target of myb1 (chicken)-like 1##AK309164|TOM1L1|10040|target of myb1 (chicken)-like 1##AK225351|TOM1L1|10040|target of myb1 (chicken)-like 1##AJ010071|TOM1L1|10040|target of myb1 (chicken)-like 1##AK303912|TOM1L1|10040|target of myb1 (chicken)-like 1##AK300823|TOM1L1|10040|target of myb1 (chicken)-like 1##AK303913|TOM1L1|10040|target of myb1 (chicken)-like 1##AK315039|TOM1L1|10040|target of myb1 (chicken)-like 1##AK315907|TOM1L1|10040|target of myb1 (chicken)-like 1##AK223125|TOM1L1|10040|target of myb1 (chicken)-like 1##BC029396|TOM1L1|10040|target of myb1 (chicken)-like 1##NM_032559|KIF2B|84643|kinesin family member 2B##AK057272|KIF2B|84643|kinesin family member 2B##AF333335|KIF2B|84643|kinesin family member 2B##BC033802|KIF2B|84643|kinesin family member 2B##AK302262|KIF2B|84643|kinesin family member 2B##NM_001243552|LOC100506650|100506650|uncharacterized LOC100506650##AK293851|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##CR541837|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##DQ893136|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##DQ896418|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AF044321|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##BC005895|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AK295381|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_001162861|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_001162862|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_004375|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AK122865|STXBP4|252983|syntaxin binding protein 4##NM_178509|STXBP4|252983|syntaxin binding protein 4##BC125116|STXBP4|252983|syntaxin binding protein 4##BC041485|STXBP4|252983|syntaxin binding protein 4##NM_002126|HLF|3131|hepatic leukemia factor	0.992322	0.0	denovo_WM_7:27:0.837
chr20	33300365	33300524	reg1005817.p1	7.121	+	AL122050 TSC_hg19_v1_chr20_+_33299806	-651	+	AK027153 AK025412 TSC_hg19_v1_chr20_+_33299500	-1034	+	TSC_hg19_v1_chr20_+_33292147 AY422170 NM_021202 AJ297792 AK292443 BC035639	-8241	+	TSC_hg19_v1_chr20_-_33413434 BC069829 BC035676 NM_001242539 NM_014071 BC047886	112970	-	TSC_hg19_v1_chr20_-_33460644 AY138815 BC040030 AK124788 AK098355 BC101371 BC141843 BC101370 BC101372 AK299494 BC033745 NM_178026	160181	-	NM_001242393 TSC_hg19_v1_chr20_+_33462793 AK000162	162358	+	AL122050|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK027153|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK025412|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AY422170|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##NM_021202|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AJ297792|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK292443|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC035639|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC069829|NCOA6|23054|nuclear receptor coactivator 6##BC035676|NCOA6|23054|nuclear receptor coactivator 6##NM_001242539|NCOA6|23054|nuclear receptor coactivator 6##NM_014071|NCOA6|23054|nuclear receptor coactivator 6##BC047886|NCOA6|23054|nuclear receptor coactivator 6##AY138815|GGT7|2686|gamma-glutamyltransferase 7##BC040030|GGT7|2686|gamma-glutamyltransferase 7##AK124788|GGT7|2686|gamma-glutamyltransferase 7##BC101371|GGT7|2686|gamma-glutamyltransferase 7##BC141843|GGT7|2686|gamma-glutamyltransferase 7##BC101370|GGT7|2686|gamma-glutamyltransferase 7##BC101372|GGT7|2686|gamma-glutamyltransferase 7##AK299494|GGT7|2686|gamma-glutamyltransferase 7##BC033745|GGT7|2686|gamma-glutamyltransferase 7##NM_178026|GGT7|2686|gamma-glutamyltransferase 7##NM_001242393|ACSS2|55902|acyl-CoA synthetase short-chain family member 2##AK000162|ACSS2|55902|acyl-CoA synthetase short-chain family member 2	0.0	0.0	
chr19	7295515	7295695	reg1005803.p3	7.120	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-1645	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-196054	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-225890	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	164402	+	TSC_hg19_v1_chr19_+_7460061 AB011093	164472	+	AK127045 NM_001130955	208968	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	2.878964	0.0	denovo_WM_7:43:0.384	denovo_WM_7:44:0.508	denovo_WM_7:58:0.243	denovo_WM_7:59:0.576	denovo_WM_7:74:0.613	denovo_WM_7:75:0.236
chr6	10848010	10848133	reg1004596.p2	7.120	+	AK314408 AB593146 AK097831 AK310329 TSC_hg19_v1_chr6_-_10838761 BC033002 NM_001242385 NM_001242957 NM_005906	-9322	-	AK311340 TSC_hg19_v1_chr6_+_10748043 NM_001127711 NM_030969 AK294018 BC013913 AK291883 AK294152 BC007080 BC001033 BC071660	-100031	+	NM_001165258 NM_016462 TSC_hg19_v1_chr6_+_10723398 AF151028 BC010086 AK310191 AK309591 AF164962 BC002496 AK223462	-124773	+	AF091149 BC069603 AF079550 BC117316 BC117318 NM_004752	34008	-	AK128130 NM_001040274	38992	+	TSC_hg19_v1_chr6_-_11044539 AK000341 BC060809 BC050278 NM_017770	196509	-	AK314408|MAK|4117|male germ cell-associated kinase##AB593146|MAK|4117|male germ cell-associated kinase##AK097831|MAK|4117|male germ cell-associated kinase##AK310329|MAK|4117|male germ cell-associated kinase##BC033002|MAK|4117|male germ cell-associated kinase##NM_001242385|MAK|4117|male germ cell-associated kinase##NM_001242957|MAK|4117|male germ cell-associated kinase##NM_005906|MAK|4117|male germ cell-associated kinase##AK311340|TMEM14B|81853|transmembrane protein 14B##NM_001127711|TMEM14B|81853|transmembrane protein 14B##NM_030969|TMEM14B|81853|transmembrane protein 14B##BC013913|TMEM14B|81853|transmembrane protein 14B##AK291883|TMEM14B|81853|transmembrane protein 14B##AK294152|TMEM14B|81853|transmembrane protein 14B##BC007080|TMEM14B|81853|transmembrane protein 14B##BC001033|TMEM14B|81853|transmembrane protein 14B##BC071660|TMEM14B|81853|transmembrane protein 14B##NM_001165258|TMEM14C|51522|transmembrane protein 14C##NM_016462|TMEM14C|51522|transmembrane protein 14C##AF151028|TMEM14C|51522|transmembrane protein 14C##BC010086|TMEM14C|51522|transmembrane protein 14C##AK310191|TMEM14C|51522|transmembrane protein 14C##AK309591|TMEM14C|51522|transmembrane protein 14C##AF164962|TMEM14C|51522|transmembrane protein 14C##BC002496|TMEM14C|51522|transmembrane protein 14C##AK223462|TMEM14C|51522|transmembrane protein 14C##AF091149|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC069603|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AF079550|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117316|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117318|GCM2|9247|glial cells missing homolog 2 (Drosophila)##NM_004752|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AK128130|SYCP2L|221711|synaptonemal complex protein 2-like##NM_001040274|SYCP2L|221711|synaptonemal complex protein 2-like##AK000341|ELOVL2|54898|ELOVL fatty acid elongase 2##BC060809|ELOVL2|54898|ELOVL fatty acid elongase 2##BC050278|ELOVL2|54898|ELOVL fatty acid elongase 2##NM_017770|ELOVL2|54898|ELOVL fatty acid elongase 2	0.993472	0.0	denovo_WM_7:-42:0.476	denovo_WM_7:-43:0.425
chr8	114471179	114471304	reg1005676.p1	7.120	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-22112	-	AB114605 NM_198124	-81860	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-3484275	-	TSC_hg19_v1_chr8_-_116680208 AK304046	2208979	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	2209924	-	TSC_hg19_v1_chr8_-_116681365 AF183810	2210094	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.057367	0.0	
chrX	115015036	115015124	reg1004157.p1	7.120	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-187212	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-218038	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-219474	+	BC003645 TSC_hg19_v1_chrX_-_115085443	70359	-	AK313927 NM_000686 X87723 U16957	286915	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	552687	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.211365	
chr1	155937939	155938075	reg1005026.p1	7.119	+	NM_181885 BC101507 BC101509 AY170824 AY288415 AY394502 EU432129	-26518	+	TSC_hg19_v1_chr1_-_155904201 AK225714	-33805	-	BC027182 TSC_hg19_v1_chr1_-_155904193 AB020714	-33817	-	TSC_hg19_v1_chr1_-_155939059 AM393305 BT007407 CU676564 DQ891489 DQ894678	1054	-	TSC_hg19_v1_chr1_-_155947967 AL512715 NM_004723	9938	-	TSC_hg19_v1_chr1_-_155948245 AF486838	10219	-	NM_181885|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##BC101507|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##BC101509|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AY170824|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AY288415|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AY394502|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##EU432129|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AK225714|KIAA0907|22889|KIAA0907##BC027182|KIAA0907|22889|KIAA0907##AB020714|KIAA0907|22889|KIAA0907##AM393305|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##BT007407|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##DQ891489|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##DQ894678|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##AL512715|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##NM_004723|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##AF486838|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2	1.073448	0.0	denovo_WM_7:-3:0.328	denovo_WM_7:-4:0.322	denovo_WM_7:-5:0.283
chr19	729358	729457	reg1004553.p1	7.118	+	TSC_hg19_v1_chr19_+_708934 NM_001040134 NM_002579 AK299809 AK315168 BC032449 Y14770	-20458	+	BC137161 BC144505 NM_214710	-33947	-	TSC_hg19_v1_chr19_+_676391 NM_005860 AK291958 AK313341 BC005839 AY358917 BC033119 U76702	-53023	+	TSC_hg19_v1_chr19_+_751132 BC052236 BX648389 BC042125 NM_173481	21722	+	TSC_hg19_v1_chr19_+_797414 NM_002819 NM_031990 NM_031991 NM_175847 X66975 BC002397 BC023219	68009	+	TSC_hg19_v1_chr19_+_797446 AB208910	68038	+	NM_001040134|PALM|5064|paralemmin##NM_002579|PALM|5064|paralemmin##AK315168|PALM|5064|paralemmin##BC032449|PALM|5064|paralemmin##Y14770|PALM|5064|paralemmin##BC137161|PRSS57|400668|protease, serine, 57##BC144505|PRSS57|400668|protease, serine, 57##NM_214710|PRSS57|400668|protease, serine, 57##NM_005860|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##AK291958|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##AK313341|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##BC005839|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##AY358917|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##BC033119|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##U76702|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##BC052236|C19orf21|126353|chromosome 19 open reading frame 21##BX648389|C19orf21|126353|chromosome 19 open reading frame 21##BC042125|C19orf21|126353|chromosome 19 open reading frame 21##NM_173481|C19orf21|126353|chromosome 19 open reading frame 21##NM_002819|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031990|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031991|PTBP1|5725|polypyrimidine tract binding protein 1##NM_175847|PTBP1|5725|polypyrimidine tract binding protein 1##X66975|PTBP1|5725|polypyrimidine tract binding protein 1##BC002397|PTBP1|5725|polypyrimidine tract binding protein 1##BC023219|PTBP1|5725|polypyrimidine tract binding protein 1##AB208910|PTBP1|5725|polypyrimidine tract binding protein 1	0.996397	0.0	
chr20	46133580	46133684	reg1001577.p2	7.117	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-2948	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-3010	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-148144	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	281120	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	281686	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1310654	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1.178885	0.0	denovo_WM_7:-76:0.884
chr11	128595575	128595726	reg1005621.p1	7.116	+	TSC_hg19_v1_chr11_+_128564132 AB385119 AY029368 CU674822 DQ892582 DQ896858	-31508	+	TSC_hg19_v1_chr11_+_128563997 X67001 S45205 BC010115 BC001670	-31595	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	-31670	+	BC136360 BC136361 BC074752 NM_000220 U12541 AK314267 AK290797	116728	-	U12544 U12545 AK308032 U12543 U03884 AK308033 BC063109 NM_153764 NM_153765 NM_153766 NM_153767 U12542	141549	-	AK312837 NM_000890 D50134 BC069386 BC069482 BC069499 BC069571 U39195	165690	+	AY029368|FLI1|2313|Friend leukemia virus integration 1##DQ892582|FLI1|2313|Friend leukemia virus integration 1##DQ896858|FLI1|2313|Friend leukemia virus integration 1##X67001|FLI1|2313|Friend leukemia virus integration 1##S45205|FLI1|2313|Friend leukemia virus integration 1##BC010115|FLI1|2313|Friend leukemia virus integration 1##BC001670|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1##BC136360|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC136361|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC074752|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_000220|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12541|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK314267|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK290797|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12544|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12545|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308032|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12543|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U03884|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308033|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC063109|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153764|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153765|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153766|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153767|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12542|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK312837|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##NM_000890|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##D50134|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069386|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069482|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069499|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069571|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##U39195|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5	0.0	0.0	
chr19	12978791	12978929	reg1004660.p2	7.116	+	NM_014975 TSC_hg19_v1_chr19_+_12949305 AB023190 AK297553 AB384551	-29539	+	TSC_hg19_v1_chr19_-_12946243 BC005063 NM_031429 AK093672 AX748256	-32619	-	TSC_hg19_v1_chr19_-_12945394 AB593122	-33468	-	FJ752529 BT007047 BC010419 TSC_hg19_v1_chr19_-_12992222	13327	-	AK075449 TSC_hg19_v1_chr19_-_12992251 AF047016 AB004574 AK297493 AF045937 AK315358 BC065209 AF060222 AK311145 NM_001375	13431	-	AB463820 BC033580 BC040000 U65404 NM_006563	19126	-	NM_014975|MAST1|22983|microtubule associated serine/threonine kinase 1##AB023190|MAST1|22983|microtubule associated serine/threonine kinase 1##AK297553|MAST1|22983|microtubule associated serine/threonine kinase 1##BC005063|RTBDN|83546|retbindin##NM_031429|RTBDN|83546|retbindin##AK093672|RTBDN|83546|retbindin##AB593122|RTBDN|83546|retbindin##FJ752529|DNASE2|1777|deoxyribonuclease II, lysosomal##BT007047|DNASE2|1777|deoxyribonuclease II, lysosomal##BC010419|DNASE2|1777|deoxyribonuclease II, lysosomal##AK075449|DNASE2|1777|deoxyribonuclease II, lysosomal##AF047016|DNASE2|1777|deoxyribonuclease II, lysosomal##AB004574|DNASE2|1777|deoxyribonuclease II, lysosomal##AK297493|DNASE2|1777|deoxyribonuclease II, lysosomal##AF045937|DNASE2|1777|deoxyribonuclease II, lysosomal##AK315358|DNASE2|1777|deoxyribonuclease II, lysosomal##BC065209|DNASE2|1777|deoxyribonuclease II, lysosomal##AF060222|DNASE2|1777|deoxyribonuclease II, lysosomal##AK311145|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_001375|DNASE2|1777|deoxyribonuclease II, lysosomal##BC033580|KLF1|10661|Kruppel-like factor 1 (erythroid)##BC040000|KLF1|10661|Kruppel-like factor 1 (erythroid)##U65404|KLF1|10661|Kruppel-like factor 1 (erythroid)##NM_006563|KLF1|10661|Kruppel-like factor 1 (erythroid)	0.997238	0.0	
chr7	139910116	139910273	reg1005638.p1	7.116	+	TSC_hg19_v1_chr7_+_139877154 AK026372	-33038	+	TSC_hg19_v1_chr7_-_139876751 AB528281 AK131497 NM_030647	-33332	-	BC081541 NM_022750	-146674	-	AL136583 AL136583 TSC_hg19_v1_chr7_-_140098295 AK299276 BC028380 BC028380 BC046567 BC046567 AK296543 AK300265 AK074823 AK074823 NM_032295 NM_207113	188105	-	NM_001008749	193648	+	TSC_hg19_v1_chr7_-_140179165 AB209298 AB527778 DQ892404 EU176516 BC064838 AM236048 BC037400 BC051821 BC012398 AK297361 AK315552	268968	-	AK026372|LOC100134229|100134229|uncharacterized LOC100134229##AK131497|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##NM_030647|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##BC081541|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##NM_022750|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK299276|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK296543|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK300265|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_032295|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_207113|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_001008749|RAB19|401409|RAB19, member RAS oncogene family##AB209298|MKRN1|23608|makorin ring finger protein 1##DQ892404|MKRN1|23608|makorin ring finger protein 1##EU176516|MKRN1|23608|makorin ring finger protein 1##BC064838|MKRN1|23608|makorin ring finger protein 1##AM236048|MKRN1|23608|makorin ring finger protein 1##BC037400|MKRN1|23608|makorin ring finger protein 1##BC051821|MKRN1|23608|makorin ring finger protein 1##BC012398|MKRN1|23608|makorin ring finger protein 1##AK297361|MKRN1|23608|makorin ring finger protein 1##AK315552|MKRN1|23608|makorin ring finger protein 1	0.0	0.0	
chr19	35951560	35951687	reg1005362.p1	7.115	+	AB378083 AB464537 BC096198 BC096199 BC096200 BC096201 NM_005306 BC095535	-11006	+	AK290710 NM_005304 BC035657	-102129	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	-109173	+	AM392574 AM392667 AM392672 AM392738 AM392847 AM392851 AM393397 AM393477 AY359007 HQ258707 BC130501 NM_001244847 NM_207392	29765	-	AY622964 AY789707 AF086315 AL832080 NM_001035516	41182	-	AY789698 AY789699 AY789700 AY789701 AY789702 AY789703 AY789704 AY789705 AY789706 BC011886 TSC_hg19_v1_chr19_-_36001373 AK096215 AK304668 AK316475 EF158323 NM_001126059 EF158324 EF158325 EF158326	49750	-	AB378083|FFAR2|2867|free fatty acid receptor 2##BC096198|FFAR2|2867|free fatty acid receptor 2##BC096199|FFAR2|2867|free fatty acid receptor 2##BC096200|FFAR2|2867|free fatty acid receptor 2##BC096201|FFAR2|2867|free fatty acid receptor 2##NM_005306|FFAR2|2867|free fatty acid receptor 2##BC095535|FFAR2|2867|free fatty acid receptor 2##AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3##NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##AM392574|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392667|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392672|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392738|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392847|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392851|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393397|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393477|KRTDAP|388533|keratinocyte differentiation-associated protein##AY359007|KRTDAP|388533|keratinocyte differentiation-associated protein##HQ258707|KRTDAP|388533|keratinocyte differentiation-associated protein##BC130501|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_001244847|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_207392|KRTDAP|388533|keratinocyte differentiation-associated protein##AY622964|DMKN|93099|dermokine##AY789707|DMKN|93099|dermokine##AF086315|DMKN|93099|dermokine##AL832080|DMKN|93099|dermokine##NM_001035516|DMKN|93099|dermokine##AY789698|DMKN|93099|dermokine##AY789699|DMKN|93099|dermokine##AY789700|DMKN|93099|dermokine##AY789701|DMKN|93099|dermokine##AY789702|DMKN|93099|dermokine##AY789703|DMKN|93099|dermokine##AY789704|DMKN|93099|dermokine##AY789705|DMKN|93099|dermokine##AY789706|DMKN|93099|dermokine##BC011886|DMKN|93099|dermokine##AK096215|DMKN|93099|dermokine##AK304668|DMKN|93099|dermokine##AK316475|DMKN|93099|dermokine##EF158323|DMKN|93099|dermokine##NM_001126059|DMKN|93099|dermokine##EF158324|DMKN|93099|dermokine##EF158325|DMKN|93099|dermokine##EF158326|DMKN|93099|dermokine	0.996736	0.0	denovo_WM_7:-34:0.449	denovo_WM_7:-35:0.449
chr7	129650598	129650776	reg1000118.p1	7.115	+	TSC_hg19_v1_chr7_-_129592801 NM_003344 NM_182697	-57878	-	BC006277 TSC_hg19_v1_chr7_-_129592785 NM_001202498	-57936	-	L22454 NM_001040110	-380770	+	TSC_hg19_v1_chr7_-_129691215 BC000190 AB463378 AJ537494 AM393415 CU679956 BC011551 AF151050 AK001317 AK022373 NM_016478	40534	-	TSC_hg19_v1_chr7_+_129710381 BC044884 NM_014997 BC036464	59673	+	TSC_hg19_v1_chr7_+_129710402 D87454	59746	+	NM_003344|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_182697|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC006277|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_001202498|UBE2H|7328|ubiquitin-conjugating enzyme E2H##L22454|NRF1|4899|nuclear respiratory factor 1##NM_001040110|NRF1|4899|nuclear respiratory factor 1##BC000190|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AJ537494|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AM393415|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC011551|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AF151050|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK001317|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK022373|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_016478|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC044884|KLHDC10|23008|kelch domain containing 10##NM_014997|KLHDC10|23008|kelch domain containing 10##BC036464|KLHDC10|23008|kelch domain containing 10##D87454|KLHDC10|23008|kelch domain containing 10	0.055908	0.0	
chr10	93978510	93978636	reg1004996.p2	7.114	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-294881	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-295057	+	AK315427 BC025966 AK075410 NM_152429	-309353	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	24446	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	72263	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	72481	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.98906	0.0	denovo_WM_7:0:0.900
chr6	88401153	88401295	reg1005719.p1	7.113	+	NM_001197259 NM_012381 NM_181837 TSC_hg19_v1_chr6_+_88299852 AF125507 AK316298 AL080116 AK222795 AK303056 AF093535 AK303195 AK302750 BC047689 BC035494 AK315911 AK303182 EU446990 EU831634 AB527813 AF135044	-101387	+	TSC_hg19_v1_chr6_-_88299726 NM_020320	-101485	-	AK023550 TSC_hg19_v1_chr6_-_88299696 BC022341 BC010420	-101517	-	TSC_hg19_v1_chr6_-_88411675 BC005051	10438	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	10685	-	TSC_hg19_v1_chr6_-_88411949 AK222701	10724	-	NM_001197259|ORC3|23595|origin recognition complex, subunit 3##NM_012381|ORC3|23595|origin recognition complex, subunit 3##NM_181837|ORC3|23595|origin recognition complex, subunit 3##AF125507|ORC3|23595|origin recognition complex, subunit 3##AK316298|ORC3|23595|origin recognition complex, subunit 3##AL080116|ORC3|23595|origin recognition complex, subunit 3##AK222795|ORC3|23595|origin recognition complex, subunit 3##AK303056|ORC3|23595|origin recognition complex, subunit 3##AF093535|ORC3|23595|origin recognition complex, subunit 3##AK303195|ORC3|23595|origin recognition complex, subunit 3##AK302750|ORC3|23595|origin recognition complex, subunit 3##BC047689|ORC3|23595|origin recognition complex, subunit 3##BC035494|ORC3|23595|origin recognition complex, subunit 3##AK315911|ORC3|23595|origin recognition complex, subunit 3##AK303182|ORC3|23595|origin recognition complex, subunit 3##EU446990|ORC3|23595|origin recognition complex, subunit 3##EU831634|ORC3|23595|origin recognition complex, subunit 3##AF135044|ORC3|23595|origin recognition complex, subunit 3##NM_020320|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##AK023550|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##BC022341|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##BC010420|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##BC005051|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2	0.999899	0.0	
chr20	39861139	39861250	reg1004674.p2	7.112	+	TSC_hg19_v1_chr20_-_39766625 BC035080	-94586	-	TSC_hg19_v1_chr20_+_39766146 NM_002660 NM_182811 BC136466 BC144136 M34667	-95006	+	TSC_hg19_v1_chr20_+_39765861 AB210028	-95332	+	AK122905 AK097523 AB081948 BC047070 AK292415 NM_015035	67529	-	TSC_hg19_v1_chr20_-_39946149 AB007855	85021	-	TSC_hg19_v1_chr20_+_39969434 BX647082 NM_022896 BC140806 BC144598	108321	+	NM_002660|PLCG1|5335|phospholipase C, gamma 1##NM_182811|PLCG1|5335|phospholipase C, gamma 1##BC136466|PLCG1|5335|phospholipase C, gamma 1##BC144136|PLCG1|5335|phospholipase C, gamma 1##M34667|PLCG1|5335|phospholipase C, gamma 1##AB210028|PLCG1|5335|phospholipase C, gamma 1##AK122905|ZHX3|23051|zinc fingers and homeoboxes 3##AK097523|ZHX3|23051|zinc fingers and homeoboxes 3##AB081948|ZHX3|23051|zinc fingers and homeoboxes 3##BC047070|ZHX3|23051|zinc fingers and homeoboxes 3##AK292415|ZHX3|23051|zinc fingers and homeoboxes 3##NM_015035|ZHX3|23051|zinc fingers and homeoboxes 3##AB007855|ZHX3|23051|zinc fingers and homeoboxes 3##BX647082|LPIN3|64900|lipin 3##NM_022896|LPIN3|64900|lipin 3##BC140806|LPIN3|64900|lipin 3##BC144598|LPIN3|64900|lipin 3	0.9893	0.781656	CTCF.p2:6:0.782	denovo_WM_7:48:0.989
chr6	48283738	48283888	reg1005077.p2	7.112	+	TSC_hg19_v1_chr6_-_48078931 AK300335	-204888	-	BC136779 AK123835 AK299301 NM_001013732 NM_207499	-247409	-	BC126194 BC126198 NM_181744 AY377391 AY288419 HQ258199	-534025	+	M65131 BC016282 TSC_hg19_v1_chr6_-_49430938 BX647789 AK312611 AK292568 NM_000255	1147132	-	AK293016 NM_018132 BC016279 TSC_hg19_v1_chr6_+_49431119	1147291	+	AK126371 NM_001010904	1183857	+	AK300335|C6orf138|442213|chromosome 6 open reading frame 138##BC136779|C6orf138|442213|chromosome 6 open reading frame 138##AK123835|C6orf138|442213|chromosome 6 open reading frame 138##AK299301|C6orf138|442213|chromosome 6 open reading frame 138##NM_001013732|C6orf138|442213|chromosome 6 open reading frame 138##NM_207499|C6orf138|442213|chromosome 6 open reading frame 138##BC126194|OPN5|221391|opsin 5##BC126198|OPN5|221391|opsin 5##NM_181744|OPN5|221391|opsin 5##AY377391|OPN5|221391|opsin 5##AY288419|OPN5|221391|opsin 5##HQ258199|OPN5|221391|opsin 5##M65131|MUT|4594|methylmalonyl CoA mutase##BC016282|MUT|4594|methylmalonyl CoA mutase##BX647789|MUT|4594|methylmalonyl CoA mutase##AK312611|MUT|4594|methylmalonyl CoA mutase##AK292568|MUT|4594|methylmalonyl CoA mutase##NM_000255|MUT|4594|methylmalonyl CoA mutase##AK293016|CENPQ|55166|centromere protein Q##NM_018132|CENPQ|55166|centromere protein Q##BC016279|CENPQ|55166|centromere protein Q##NM_001010904|GLYATL3|389396|glycine-N-acyltransferase-like 3	0.183894	0.0	
chr13	37574689	37574869	reg1002072.p2	7.111	+	NM_181503	-102	+	TSC_hg19_v1_chr13_-_37573478 AK299085 NM_001142364 NM_013338	-1290	-	CU680348 TSC_hg19_v1_chr13_-_37573465 AF161498 BC012531 AF183413 AK299126	-1326	-	BC020773 TSC_hg19_v1_chr13_+_37574924 AF279901 AB463623 DQ893134 DQ896414	150	+	AK292376 TSC_hg19_v1_chr13_-_37633791 AF445026 AF093250 AK225376 AJ130894 BC001145 AK304227 BC030686 NM_001014286 NM_017569	58934	-	BC028723 NM_145203	105021	-	NM_181503|EXOSC8|11340|exosome component 8##AK299085|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##NM_001142364|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##NM_013338|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##AF161498|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##BC012531|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##AF183413|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##AK299126|ALG5|29880|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)##BC020773|EXOSC8|11340|exosome component 8##AF279901|EXOSC8|11340|exosome component 8##DQ893134|EXOSC8|11340|exosome component 8##DQ896414|EXOSC8|11340|exosome component 8##AK292376|FAM48A|55578|family with sequence similarity 48, member A##AF445026|FAM48A|55578|family with sequence similarity 48, member A##AF093250|FAM48A|55578|family with sequence similarity 48, member A##AK225376|FAM48A|55578|family with sequence similarity 48, member A##AJ130894|FAM48A|55578|family with sequence similarity 48, member A##BC001145|FAM48A|55578|family with sequence similarity 48, member A##AK304227|FAM48A|55578|family with sequence similarity 48, member A##BC030686|FAM48A|55578|family with sequence similarity 48, member A##NM_001014286|FAM48A|55578|family with sequence similarity 48, member A##NM_017569|FAM48A|55578|family with sequence similarity 48, member A##BC028723|CSNK1A1L|122011|casein kinase 1, alpha 1-like##NM_145203|CSNK1A1L|122011|casein kinase 1, alpha 1-like	0.0	0.0	
chr5	116099184	116099306	reg1001379.p1	7.111	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-188731	-	TSC_hg19_v1_chr5_+_115898220 D28352	-201021	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-678524	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2224993	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2307566	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2307920	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.044707	0.0	denovo_WM_7:60:0.457	denovo_WM_7:61:0.457
chr7	104647299	104647443	reg1005378.p1	7.111	+	TSC_hg19_v1_chr7_-_104567089 BC050337	-80281	-	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-678153	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-798940	-	TSC_hg19_v1_chr7_-_104653491 AK124046	6111	-	TSC_hg19_v1_chr7_-_104654062 AK094372	6703	-	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	7131	-	BC050337|LOC723809|723809|uncharacterized LOC723809##AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545	0.999651	0.0	
chr9	33424610	33424733	reg1003222.p2	7.111	+	AK297860 TSC_hg19_v1_chr9_-_33402631 AK301949	-22059	-	BC062701 BC119672 BC119673 AB006190 NM_001170 TSC_hg19_v1_chr9_-_33402526	-22156	-	AK294028 TSC_hg19_v1_chr9_-_33402480 AK297885	-22193	-	BT007199 CR541991 CR542025 TSC_hg19_v1_chr9_-_33447592 AJ493597 BC013566 AB001325 AK292208 AK303206 AK315760 AK095363 NM_004925	22915	-	AK026193 TSC_hg19_v1_chr9_-_33465258	40553	-	TSC_hg19_v1_chr9_-_33473861 BC030139	49182	-	AK297860|AQP7|364|aquaporin 7##AK301949|AQP7|364|aquaporin 7##BC062701|AQP7|364|aquaporin 7##BC119672|AQP7|364|aquaporin 7##BC119673|AQP7|364|aquaporin 7##AB006190|AQP7|364|aquaporin 7##NM_001170|AQP7|364|aquaporin 7##AK294028|AQP7|364|aquaporin 7##AK297885|AQP7|364|aquaporin 7##BT007199|AQP3|360|aquaporin 3 (Gill blood group)##CR541991|AQP3|360|aquaporin 3 (Gill blood group)##CR542025|AQP3|360|aquaporin 3 (Gill blood group)##AJ493597|AQP3|360|aquaporin 3 (Gill blood group)##BC013566|AQP3|360|aquaporin 3 (Gill blood group)##AB001325|AQP3|360|aquaporin 3 (Gill blood group)##AK292208|AQP3|360|aquaporin 3 (Gill blood group)##AK303206|AQP3|360|aquaporin 3 (Gill blood group)##AK315760|AQP3|360|aquaporin 3 (Gill blood group)##AK095363|AQP3|360|aquaporin 3 (Gill blood group)##NM_004925|AQP3|360|aquaporin 3 (Gill blood group)##AK026193|NOL6|65083|nucleolar protein family 6 (RNA-associated)##BC030139|NOL6|65083|nucleolar protein family 6 (RNA-associated)	2.773305	0.0	denovo_WM_7:-19:0.451	denovo_WM_7:-23:0.236	denovo_WM_7:-36:0.200	denovo_WM_7:-37:0.247	denovo_WM_7:71:0.380	denovo_WM_7:78:0.359	denovo_WM_7:107:0.449
chr1	150253744	150253893	reg1006413.p1	7.110	+	AX770999 NM_024579 AX770997 AK026874 BC017761 AM392820 AM392958 AM393066 AM393249 AM393463 AM393548 AM393619 AM393652 AM393742 CU676046	-8617	+	TSC_hg19_v1_chr1_-_150241417 AY358951 AK300640 AK075452 AK298832 AK307358 NM_001077628 NM_001243771 NM_001243772 NM_016022	-12310	-	CU676022 AF508787 AY113698 AY113699 AF151835 AK075295 AX775955 BC017699 TSC_hg19_v1_chr1_-_150241368 BC008732 BC001230 BC015568 AK297680 AK298876 AK027879 AK314490 AX775957 BC020590 BC009501	-12514	-	BC047238 NM_144697 AK098755 AK315397	1425	+	TSC_hg19_v1_chr1_+_150266280 NM_018997 NM_031901 AK289467 AB049955 BC004566 BC006554 U79258	12482	+	TSC_hg19_v1_chr1_+_150293934 NM_004698	40107	+	NM_024579|C1orf54|79630|chromosome 1 open reading frame 54##AX770997|C1orf54|79630|chromosome 1 open reading frame 54##AK026874|C1orf54|79630|chromosome 1 open reading frame 54##BC017761|C1orf54|79630|chromosome 1 open reading frame 54##AM392820|C1orf54|79630|chromosome 1 open reading frame 54##AM392958|C1orf54|79630|chromosome 1 open reading frame 54##AM393066|C1orf54|79630|chromosome 1 open reading frame 54##AM393249|C1orf54|79630|chromosome 1 open reading frame 54##AM393463|C1orf54|79630|chromosome 1 open reading frame 54##AM393548|C1orf54|79630|chromosome 1 open reading frame 54##AM393619|C1orf54|79630|chromosome 1 open reading frame 54##AM393652|C1orf54|79630|chromosome 1 open reading frame 54##AM393742|C1orf54|79630|chromosome 1 open reading frame 54##AY358951|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK300640|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK075452|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK298832|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK307358|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_001077628|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_001243771|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_001243772|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##NM_016022|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AF508787|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AY113698|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AY113699|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AF151835|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK075295|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AX775955|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC017699|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC008732|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC001230|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC015568|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK297680|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK298876|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK027879|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AK314490|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##AX775957|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC020590|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC009501|APH1A|51107|anterior pharynx defective 1 homolog A (C. elegans)##BC047238|C1orf51|148523|chromosome 1 open reading frame 51##NM_144697|C1orf51|148523|chromosome 1 open reading frame 51##AK098755|C1orf51|148523|chromosome 1 open reading frame 51##AK315397|C1orf51|148523|chromosome 1 open reading frame 51##NM_018997|MRPS21|54460|mitochondrial ribosomal protein S21##NM_031901|MRPS21|54460|mitochondrial ribosomal protein S21##AK289467|MRPS21|54460|mitochondrial ribosomal protein S21##AB049955|MRPS21|54460|mitochondrial ribosomal protein S21##BC004566|MRPS21|54460|mitochondrial ribosomal protein S21##BC006554|MRPS21|54460|mitochondrial ribosomal protein S21##U79258|MRPS21|54460|mitochondrial ribosomal protein S21##NM_004698|PRPF3|9129|PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)	0.0	0.819265	CTCF.p2:11:0.819
chr19	7182913	7183093	reg1005626.p1	7.110	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-83452	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-113288	+	AK315405 NM_001044387 NM_001044388 NM_024341	-113541	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	110957	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	277004	+	TSC_hg19_v1_chr19_+_7460061 AB011093	277074	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.995053	0.0	denovo_WM_7:-73:0.332	denovo_WM_7:-74:0.332	denovo_WM_7:-75:0.332
chr9	114837079	114837204	reg1003187.p1	7.109	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-177674	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-178027	+	AL833535 NM_173521	-291366	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	100379	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	258146	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	258708	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.999214	0.329874	denovo_WM_7:-58:0.848	CTCF.p2:73:0.330
chr4	22480200	22480342	reg1005670.p1	7.108	+	NM_147182 TSC_hg19_v1_chr4_-_21950396	-529887	-	BX648990 DQ148490 NM_001035003	-780954	-	DQ148491 NM_001035004	-933993	-	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	37283	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	214321	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1411382	-	NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	0.0	0.0	
chr19	31831221	31831331	reg1005367.p2	7.107	+	BC150171 AB002388 BC146757 NM_014717 BC132720 BC132722	-967896	+	TSC_hg19_v1_chr19_+_30433145 NM_003796 AK226173 AF091095 AK292170 BC067259 AK314313 AK001437 NM_134447 AB385084	-1397994	+	BC026184 NM_001252641	-1416726	+	TSC_hg19_v1_chr19_-_31840331 AB040907 AM393571 AK291466 BX648745 NM_020856	9071	-	FJ211597 NM_001205273	251910	+	TSC_hg19_v1_chr19_+_32836524 NM_001136156 NM_014910 AK292526 AB029007 BX640881 BC136417 AL713775	1005286	+	BC150171|ZNF536|9745|zinc finger protein 536##AB002388|ZNF536|9745|zinc finger protein 536##BC146757|ZNF536|9745|zinc finger protein 536##NM_014717|ZNF536|9745|zinc finger protein 536##BC132720|ZNF536|9745|zinc finger protein 536##BC132722|ZNF536|9745|zinc finger protein 536##NM_003796|URI1|8725|URI1, prefoldin-like chaperone##AK226173|URI1|8725|URI1, prefoldin-like chaperone##AF091095|URI1|8725|URI1, prefoldin-like chaperone##AK292170|URI1|8725|URI1, prefoldin-like chaperone##BC067259|URI1|8725|URI1, prefoldin-like chaperone##AK314313|URI1|8725|URI1, prefoldin-like chaperone##AK001437|URI1|8725|URI1, prefoldin-like chaperone##NM_134447|URI1|8725|URI1, prefoldin-like chaperone##BC026184|URI1|8725|URI1, prefoldin-like chaperone##NM_001252641|URI1|8725|URI1, prefoldin-like chaperone##AB040907|TSHZ3|57616|teashirt zinc finger homeobox 3##AM393571|TSHZ3|57616|teashirt zinc finger homeobox 3##AK291466|TSHZ3|57616|teashirt zinc finger homeobox 3##BX648745|TSHZ3|57616|teashirt zinc finger homeobox 3##NM_020856|TSHZ3|57616|teashirt zinc finger homeobox 3##FJ211597|THEG5|100507527|testis highly expressed protein 5##NM_001205273|THEG5|100507527|testis highly expressed protein 5##NM_001136156|ZNF507|22847|zinc finger protein 507##NM_014910|ZNF507|22847|zinc finger protein 507##AK292526|ZNF507|22847|zinc finger protein 507##AB029007|ZNF507|22847|zinc finger protein 507##BX640881|ZNF507|22847|zinc finger protein 507##BC136417|ZNF507|22847|zinc finger protein 507##AL713775|ZNF507|22847|zinc finger protein 507	1.012889	0.0	
chr11	93379237	93379367	reg1003431.p1	7.106	+	AF197137 TSC_hg19_v1_chr11_-_93276558 BC031564 NM_020179	-102767	-	TSC_hg19_v1_chr11_+_93063782 NM_181645 BC017929	-315459	+	TSC_hg19_v1_chr11_-_92931106 AY162216 NM_152313 BC047374	-448217	-	TSC_hg19_v1_chr11_+_93394847 NM_033395 BC015989 BC017394	15532	+	AB051518 TSC_hg19_v1_chr11_+_93394877	15587	+	AF275800 TSC_hg19_v1_chr11_-_93474661 BC001972 AF086435 AK027016 NM_024116	95304	-	AF197137|C11orf75|56935|chromosome 11 open reading frame 75##BC031564|C11orf75|56935|chromosome 11 open reading frame 75##NM_020179|C11orf75|56935|chromosome 11 open reading frame 75##NM_181645|CCDC67|159989|coiled-coil domain containing 67##BC017929|CCDC67|159989|coiled-coil domain containing 67##AY162216|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_152313|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##BC047374|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_033395|KIAA1731|85459|KIAA1731##BC015989|KIAA1731|85459|KIAA1731##BC017394|KIAA1731|85459|KIAA1731##AB051518|KIAA1731|85459|KIAA1731##AF275800|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##BC001972|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##AF086435|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##AK027016|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##NM_024116|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa	0.998445	0.0	
chr5	121836563	121836670	reg1004512.p2	7.106	+	BC029465 TSC_hg19_v1_chr5_-_121814783	-21833	-	TSC_hg19_v1_chr5_+_121647890 DQ227317 NM_001242935 NM_005460 BC094759 BC040552 AK304646 AK310835 AF076929 BC033743	-188758	+	AK299687 TSC_hg19_v1_chr5_+_121647434	-189204	+	TSC_hg19_v1_chr5_+_122110737 AK023716 NM_003100	274128	+	AK023581 TSC_hg19_v1_chr5_+_122110776 BC003382 AF065482 AK222968	274153	+	TSC_hg19_v1_chr5_+_122110786 AY272044 AK002170 AB464236 BT009841 DQ890933 DQ894096 AF043453	274196	+	DQ227317|SNCAIP|9627|synuclein, alpha interacting protein##NM_001242935|SNCAIP|9627|synuclein, alpha interacting protein##NM_005460|SNCAIP|9627|synuclein, alpha interacting protein##BC094759|SNCAIP|9627|synuclein, alpha interacting protein##BC040552|SNCAIP|9627|synuclein, alpha interacting protein##AK304646|SNCAIP|9627|synuclein, alpha interacting protein##AK310835|SNCAIP|9627|synuclein, alpha interacting protein##AF076929|SNCAIP|9627|synuclein, alpha interacting protein##BC033743|SNCAIP|9627|synuclein, alpha interacting protein##AK299687|SNCAIP|9627|synuclein, alpha interacting protein##AK023716|SNX2|6643|sorting nexin 2##NM_003100|SNX2|6643|sorting nexin 2##AK023581|SNX2|6643|sorting nexin 2##BC003382|SNX2|6643|sorting nexin 2##AF065482|SNX2|6643|sorting nexin 2##AK222968|SNX2|6643|sorting nexin 2##AY272044|SNX2|6643|sorting nexin 2##AK002170|SNX2|6643|sorting nexin 2##BT009841|SNX2|6643|sorting nexin 2##DQ890933|SNX2|6643|sorting nexin 2##DQ894096|SNX2|6643|sorting nexin 2##AF043453|SNX2|6643|sorting nexin 2	1.390422	0.546787	denovo_WM_7:-28:0.904	CTCF.p2:31:0.547	denovo_WM_7:-67:0.203
chr7	77044025	77044171	reg1005018.p1	7.106	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-214962	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-292152	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-787551	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	1620	-	TSC_hg19_v1_chr7_+_77166392 BC050008	122280	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	122708	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	1.995257	0.0	denovo_WM_7:71:0.561	denovo_WM_7:72:0.281	denovo_WM_7:86:0.332	denovo_WM_7:87:0.612
chr1	213005286	213005396	reg1003984.p1	7.104	+	AK293129 NM_001042552 NM_001042553 NM_001146169 NM_001146170 NM_001146171 AK304557 TSC_hg19_v1_chr1_+_212965255 BC113638 BC117485 BC143956 BC143957 AL832248 BC048115 HQ258161	-40123	+	AB528354 CU675531 DQ892899 DQ896149 AK222996 AF201941 TSC_hg19_v1_chr1_-_212965111 BC007067 AK223260 AK303250 BC036048 AF255793 AK313730 NM_001042549 NM_015471	-40220	-	TSC_hg19_v1_chr1_-_212873317 AF255346 NM_018664	-132021	-	AY640234 BC035742 NM_001024601	15627	-	TSC_hg19_v1_chr1_-_213031441 AY030238 AY030239 AK092887	26123	-	AF118637 NM_014053 AK314481 BC048312 TSC_hg19_v1_chr1_+_213031754	26339	+	AK293129|TATDN3|128387|TatD DNase domain containing 3##NM_001042552|TATDN3|128387|TatD DNase domain containing 3##NM_001042553|TATDN3|128387|TatD DNase domain containing 3##NM_001146169|TATDN3|128387|TatD DNase domain containing 3##NM_001146170|TATDN3|128387|TatD DNase domain containing 3##NM_001146171|TATDN3|128387|TatD DNase domain containing 3##AK304557|TATDN3|128387|TatD DNase domain containing 3##BC113638|TATDN3|128387|TatD DNase domain containing 3##BC117485|TATDN3|128387|TatD DNase domain containing 3##BC143956|TATDN3|128387|TatD DNase domain containing 3##BC143957|TATDN3|128387|TatD DNase domain containing 3##AL832248|TATDN3|128387|TatD DNase domain containing 3##BC048115|TATDN3|128387|TatD DNase domain containing 3##HQ258161|TATDN3|128387|TatD DNase domain containing 3##DQ892899|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##DQ896149|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK222996|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF201941|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC007067|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK223260|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK303250|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC036048|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255793|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK313730|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001042549|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_015471|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255346|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##NM_018664|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##AY640234|C1orf227|149643|chromosome 1 open reading frame 227##BC035742|C1orf227|149643|chromosome 1 open reading frame 227##NM_001024601|C1orf227|149643|chromosome 1 open reading frame 227##AY030238|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY030239|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AF118637|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##NM_014053|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##AK314481|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##BC048312|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1	0.998449	0.0	
chr15	34517054	34517201	reg1005671.p2	7.104	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-14826	-	BC026234 AL136908 TSC_hg19_v1_chr15_-_34502237 AK293021 BC111000 AK297904	-14902	-	AK057200 NM_152595 BC130441	-122846	+	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	113	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	93851	-	AF105366 AF531258 NM_001042497 NM_133647	111917	-	BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##BC026234|C15orf29|79768|chromosome 15 open reading frame 29##AL136908|C15orf29|79768|chromosome 15 open reading frame 29##AK293021|C15orf29|79768|chromosome 15 open reading frame 29##BC111000|C15orf29|79768|chromosome 15 open reading frame 29##AK297904|C15orf29|79768|chromosome 15 open reading frame 29##AK057200|PGBD4|161779|piggyBac transposable element derived 4##NM_152595|PGBD4|161779|piggyBac transposable element derived 4##BC130441|PGBD4|161779|piggyBac transposable element derived 4##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.0	0.0	
chr2	8683636	8683816	reg1004390.p1	7.104	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1626139	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1665863	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1677023	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	138477	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	293993	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	460095	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.358242	0.0	denovo_WM_7:0:0.326
chr8	123486838	123486970	reg1003834.p1	7.104	+	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	-833278	-	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-1662398	-	BC098573 TSC_hg19_v1_chr8_-_121824269	-1662634	-	TSC_hg19_v1_chr8_+_123793897 NM_014943	307007	+	BC042145 TSC_hg19_v1_chr8_+_123794000	307090	+	TSC_hg19_v1_chr8_+_123794108 AB020661	307199	+	BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC098573|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##AB020661|ZHX2|22882|zinc fingers and homeoboxes 2	1.99625	0.0	denovo_WM_7:74:0.395	denovo_WM_7:75:0.297
chr16	445399	445520	reg1004808.p2	7.102	+	DQ892035 DQ895226 BC021557 AB045292 TSC_hg19_v1_chr16_-_431979 NM_021259 AK091823	-13538	-	BX647501 BC013829 TSC_hg19_v1_chr16_-_420539 AK226042 AK096844 BC000507 AK315180 NM_006428	-24921	-	TSC_hg19_v1_chr16_-_402657 NM_003502 NM_181050	-42813	-	TSC_hg19_v1_chr16_+_447198 BC017067 NM_005009 BC004880 Y07604 AB528678 BT019438	1752	+	TSC_hg19_v1_chr16_+_451884 AK055839 NM_020664 BC010740 AK128012 AK225961 BC030226	6425	+	TSC_hg19_v1_chr16_+_451944 AJ293009 CU679809	6488	+	DQ892035|TMEM8A|58986|transmembrane protein 8A##DQ895226|TMEM8A|58986|transmembrane protein 8A##BC021557|TMEM8A|58986|transmembrane protein 8A##AB045292|TMEM8A|58986|transmembrane protein 8A##NM_021259|TMEM8A|58986|transmembrane protein 8A##AK091823|TMEM8A|58986|transmembrane protein 8A##BX647501|MRPL28|10573|mitochondrial ribosomal protein L28##BC013829|MRPL28|10573|mitochondrial ribosomal protein L28##AK226042|MRPL28|10573|mitochondrial ribosomal protein L28##AK096844|MRPL28|10573|mitochondrial ribosomal protein L28##BC000507|MRPL28|10573|mitochondrial ribosomal protein L28##AK315180|MRPL28|10573|mitochondrial ribosomal protein L28##NM_006428|MRPL28|10573|mitochondrial ribosomal protein L28##NM_003502|AXIN1|8312|axin 1##NM_181050|AXIN1|8312|axin 1##BC017067|NME4|4833|non-metastatic cells 4, protein expressed in##NM_005009|NME4|4833|non-metastatic cells 4, protein expressed in##BC004880|NME4|4833|non-metastatic cells 4, protein expressed in##Y07604|NME4|4833|non-metastatic cells 4, protein expressed in##BT019438|NME4|4833|non-metastatic cells 4, protein expressed in##AK055839|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##NM_020664|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC010740|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK128012|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK225961|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC030226|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AJ293009|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal	1.231116	0.0	denovo_WM_7:31:0.269	denovo_WM_7:32:0.279	denovo_WM_7:33:0.376
chr1	33288182	33288314	reg1004599.p1	7.101	+	NM_003680 AK125213	-4556	-	TSC_hg19_v1_chr1_+_33283215 BC015175	-4936	+	AK090711 AX746586 TSC_hg19_v1_chr1_+_33283180 BX647916 NM_001017406 NM_022753 BX647667	-5131	+	BX537781 AK092102 AX747354 NM_001171940 NM_153756 TSC_hg19_v1_chr1_-_33336539	48172	-	BC062297 NM_001171941	49833	-	TSC_hg19_v1_chr1_+_33352097 DQ426877 AK313907 BC001777 NM_002143	63836	+	NM_003680|YARS|8565|tyrosyl-tRNA synthetase##AK125213|YARS|8565|tyrosyl-tRNA synthetase##BC015175|S100PBP|64766|S100P binding protein##AK090711|S100PBP|64766|S100P binding protein##BX647916|S100PBP|64766|S100P binding protein##NM_001017406|S100PBP|64766|S100P binding protein##NM_022753|S100PBP|64766|S100P binding protein##BX647667|S100PBP|64766|S100P binding protein##BX537781|FNDC5|252995|fibronectin type III domain containing 5##AK092102|FNDC5|252995|fibronectin type III domain containing 5##NM_001171940|FNDC5|252995|fibronectin type III domain containing 5##NM_153756|FNDC5|252995|fibronectin type III domain containing 5##BC062297|FNDC5|252995|fibronectin type III domain containing 5##NM_001171941|FNDC5|252995|fibronectin type III domain containing 5##DQ426877|HPCA|3208|hippocalcin##AK313907|HPCA|3208|hippocalcin##BC001777|HPCA|3208|hippocalcin##NM_002143|HPCA|3208|hippocalcin	0.992509	0.0	
chr21	47061166	47061302	reg1005517.p1	7.101	+	TSC_hg19_v1_chr21_-_46962344 U17566 U15939 U19720 BC003068 AK313125 AK307623 NM_001205206 NM_194255	-98902	-	AK303168 NM_001205207	-106700	-	AF018081 NM_030582 AK311062 TSC_hg19_v1_chr21_+_46875435	-185816	+	TSC_hg19_v1_chr21_+_47063638 AK310131	2395	+	AF176329 NM_001130141 NM_020528 BC012061 AK310672	208654	+	TSC_hg19_v1_chr21_+_47401683 NM_001848 BC052575 AK298968 AK299396 AK307989 BC032821 X15879	340451	+	U17566|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U15939|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U19720|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##BC003068|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK313125|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK307623|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205206|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_194255|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK303168|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205207|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AF018081|COL18A1|80781|collagen, type XVIII, alpha 1##NM_030582|COL18A1|80781|collagen, type XVIII, alpha 1##AK310131|PCBP3|54039|poly(rC) binding protein 3##AF176329|PCBP3|54039|poly(rC) binding protein 3##NM_001130141|PCBP3|54039|poly(rC) binding protein 3##NM_020528|PCBP3|54039|poly(rC) binding protein 3##BC012061|PCBP3|54039|poly(rC) binding protein 3##AK310672|PCBP3|54039|poly(rC) binding protein 3##NM_001848|COL6A1|1291|collagen, type VI, alpha 1##BC052575|COL6A1|1291|collagen, type VI, alpha 1##AK298968|COL6A1|1291|collagen, type VI, alpha 1##AK299396|COL6A1|1291|collagen, type VI, alpha 1##AK307989|COL6A1|1291|collagen, type VI, alpha 1##BC032821|COL6A1|1291|collagen, type VI, alpha 1##X15879|COL6A1|1291|collagen, type VI, alpha 1	0.0	0.0	
chr1	151168268	151168424	reg1000357.p1	7.100	+	TSC_hg19_v1_chr1_-_151162674 AK310045 DQ655941	-5673	-	DQ892940 DQ896189 AB464341 BT019356 BT019357 AK222935 AK222939 TSC_hg19_v1_chr1_-_151162644 BC003151 D43642 NM_005997 AK225130 AK297565	-5725	-	AF165217 AK313280 AK092700 AK300675 AX747678 BC017810 BX647346 AF177173 NM_013353	-19861	-	TSC_hg19_v1_chr1_+_151171050 AK309826 NM_001135636 NM_001135637 NM_001135638 NM_003557 AK295691 BC007833 U78576 BC007005 U78577 U78575 AK291015	2687	+	TSC_hg19_v1_chr1_+_151227206 NM_002810 U24704	58851	+	TSC_hg19_v1_chr1_+_151227209 BC072008	58875	+	AK310045|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ655941|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ892940|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ896189|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019356|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019357|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222935|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222939|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BC003151|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##D43642|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##NM_005997|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK225130|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK297565|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AF165217|TMOD4|29765|tropomodulin 4 (muscle)##AK313280|TMOD4|29765|tropomodulin 4 (muscle)##AK092700|TMOD4|29765|tropomodulin 4 (muscle)##AK300675|TMOD4|29765|tropomodulin 4 (muscle)##BC017810|TMOD4|29765|tropomodulin 4 (muscle)##BX647346|TMOD4|29765|tropomodulin 4 (muscle)##AF177173|TMOD4|29765|tropomodulin 4 (muscle)##NM_013353|TMOD4|29765|tropomodulin 4 (muscle)##AK309826|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135636|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135637|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135638|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_003557|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK295691|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##BC007833|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78576|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78577|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78575|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK291015|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_002810|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##U24704|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC072008|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	1.676977	0.0	denovo_WM_7:22:0.548	denovo_WM_7:37:0.537
chr1	210001660	210001770	reg1005271.p2	7.099	+	BX648514 CU692760 TSC_hg19_v1_chr1_+_210001421	-305	+	TSC_hg19_v1_chr1_+_210001363 CR749825	-346	+	BC022964 TSC_hg19_v1_chr1_+_210001361	-359	+	NM_001146261 NM_001146262 NM_001146264 NM_153262 TSC_hg19_v1_chr1_+_210111559	109835	+	AJ617623 TSC_hg19_v1_chr1_+_210111595 AK091517 AX747035 BC130323 BC144154 BC144155 BC144157 AJ617625	109874	+	BC012083 NM_019605 AK096381	404496	+	BX648514|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##CR749825|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##BC022964|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##NM_001146261|SYT14|255928|synaptotagmin XIV##NM_001146262|SYT14|255928|synaptotagmin XIV##NM_001146264|SYT14|255928|synaptotagmin XIV##NM_153262|SYT14|255928|synaptotagmin XIV##AJ617623|SYT14|255928|synaptotagmin XIV##AK091517|SYT14|255928|synaptotagmin XIV##BC130323|SYT14|255928|synaptotagmin XIV##BC144154|SYT14|255928|synaptotagmin XIV##BC144155|SYT14|255928|synaptotagmin XIV##BC144157|SYT14|255928|synaptotagmin XIV##AJ617625|SYT14|255928|synaptotagmin XIV##BC012083|SERTAD4|56256|SERTA domain containing 4##NM_019605|SERTAD4|56256|SERTA domain containing 4##AK096381|SERTAD4|56256|SERTA domain containing 4	0.999824	0.0	denovo_WM_7:39:0.457	denovo_WM_7:40:0.457
chr17	4278827	4279007	reg1001160.p2	7.099	+	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	-9009	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	-9206	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-111766	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	58325	+	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	123319	+	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	179757	-	AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a	0.0	0.0	
chr18	60331220	60331357	reg1004429.p1	7.099	+	NM_017742 TSC_hg19_v1_chr18_+_60190696 BC006340	-140534	+	AB209762 AF018253 NM_003839 AB527346	-338738	+	TSC_hg19_v1_chr18_+_59855176 AB384606	-476078	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	51376	+	TSC_hg19_v1_chr18_+_60383911 AB011178	52638	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	53020	+	NM_017742|ZCCHC2|54877|zinc finger, CCHC domain containing 2##BC006340|ZCCHC2|54877|zinc finger, CCHC domain containing 2##AB209762|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##AF018253|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_003839|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1	0.060876	0.0	
chr2	26001842	26001993	reg1005888.p1	7.099	+	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	-105516	-	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-436455	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-436554	-	AB385496 TSC_hg19_v1_chr2_-_26101159	99212	-	TSC_hg19_v1_chr2_-_26101174 AB084279	99256	-	TSC_hg19_v1_chr2_-_26101321 AB051472 NM_018263	99397	-	AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)##AB051472|ASXL2|55252|additional sex combs like 2 (Drosophila)##NM_018263|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.997229	0.0	
chr3	111409191	111409371	reg1005575.p1	7.099	+	AK056141 NM_001185106 NM_153268 TSC_hg19_v1_chr3_+_111393527	-15756	+	NM_024508	-95100	-	AK290719 AK315237 TSC_hg19_v1_chr3_+_111261063 AL833681 CU676690	-148214	+	AK296841 NM_001134437 TSC_hg19_v1_chr3_+_111451348 CR749654 AK307491	42064	+	NM_001134438 NM_145753 AK096151 TSC_hg19_v1_chr3_+_111578114 AK315050	168790	+	TSC_hg19_v1_chr3_+_111578136 BC069194	168856	+	AK056141|PLCXD2|257068|phosphatidylinositol-specific phospholipase C, X domain containing 2##NM_001185106|PLCXD2|257068|phosphatidylinositol-specific phospholipase C, X domain containing 2##NM_153268|PLCXD2|257068|phosphatidylinositol-specific phospholipase C, X domain containing 2##NM_024508|ZBED2|79413|zinc finger, BED-type containing 2##AK290719|CD96|10225|CD96 molecule##AK315237|CD96|10225|CD96 molecule##AL833681|CD96|10225|CD96 molecule##AK296841|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##NM_001134437|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##CR749654|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##AK307491|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##NM_001134438|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##NM_145753|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##AK096151|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##AK315050|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##BC069194|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2	0.0	0.0	
chr3	121977784	121977950	reg1005714.p1	7.099	+	NM_001178065 U20760	-74687	+	NM_000388 U20759	-75338	+	NM_006889 NM_176892 U04343	-181145	+	NM_005213 AK291308 BC010379 X05978 CR456914	66207	+	BC019231 BC109378 TSC_hg19_v1_chr3_-_122102079 BC054051 BC062725 NM_001017928	124210	-	NM_014367 AK026030 BC010896 BC015060 AF201944 AF107495 AF250321 TSC_hg19_v1_chr3_+_122103076 AK293994 AF191020	125201	+	NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule##NM_005213|CSTA|1475|cystatin A (stefin A)##AK291308|CSTA|1475|cystatin A (stefin A)##BC010379|CSTA|1475|cystatin A (stefin A)##X05978|CSTA|1475|cystatin A (stefin A)##CR456914|CSTA|1475|cystatin A (stefin A)##BC109378|CCDC58|131076|coiled-coil domain containing 58##BC054051|CCDC58|131076|coiled-coil domain containing 58##BC062725|CCDC58|131076|coiled-coil domain containing 58##NM_001017928|CCDC58|131076|coiled-coil domain containing 58##NM_014367|FAM162A|26355|family with sequence similarity 162, member A##AK026030|FAM162A|26355|family with sequence similarity 162, member A##BC010896|FAM162A|26355|family with sequence similarity 162, member A##BC015060|FAM162A|26355|family with sequence similarity 162, member A##AF201944|FAM162A|26355|family with sequence similarity 162, member A##AF107495|FAM162A|26355|family with sequence similarity 162, member A##AF250321|FAM162A|26355|family with sequence similarity 162, member A##AK293994|FAM162A|26355|family with sequence similarity 162, member A##AF191020|FAM162A|26355|family with sequence similarity 162, member A	0.0	0.0	
chr10	106098525	106098693	reg1004468.p2	7.098	+	AB051541 TSC_hg19_v1_chr10_-_106098200 AK129877	-420	-	BC070108 NM_033397	-4947	-	BC046194 NM_001191014 NM_001191015 BC023583 AK297522	-63705	+	TSC_hg19_v1_chr10_+_106113521 BC036225 NM_001008723 BX641120 AK093227 AX748000 BC109126	14932	+	AB028982 NM_014978	302249	+	BC117417 TSC_hg19_v1_chr10_+_106401047	302436	+	AB051541|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC070108|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##NM_033397|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC046194|GSTO2|119391|glutathione S-transferase omega 2##NM_001191014|GSTO2|119391|glutathione S-transferase omega 2##NM_001191015|GSTO2|119391|glutathione S-transferase omega 2##BC023583|GSTO2|119391|glutathione S-transferase omega 2##AK297522|GSTO2|119391|glutathione S-transferase omega 2##BC036225|CCDC147|159686|coiled-coil domain containing 147##NM_001008723|CCDC147|159686|coiled-coil domain containing 147##BX641120|CCDC147|159686|coiled-coil domain containing 147##AK093227|CCDC147|159686|coiled-coil domain containing 147##BC109126|CCDC147|159686|coiled-coil domain containing 147##AB028982|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##NM_014978|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3	0.994357	0.0	denovo_WM_7:64:0.982
chr22	31916145	31916279	reg1005550.p2	7.098	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	-23666	+	BC129926 BC129945 TSC_hg19_v1_chr22_+_31892499 AK303362 AK293987	-23771	+	TSC_hg19_v1_chr22_+_31892148 AB011114 NM_001007467 NM_014775	-24040	+	BC033613 TSC_hg19_v1_chr22_+_32010180	93954	+	TSC_hg19_v1_chr22_-_32026821 BC001482 NM_014338	110620	-	TSC_hg19_v1_chr22_-_32058202 AB528208 CU013140 CU013428 CR456540 DQ656048	141996	-	BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC129926|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC129945|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK303362|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK293987|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AB011114|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##NM_001007467|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##NM_014775|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC033613|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC001482|PISD|23761|phosphatidylserine decarboxylase##NM_014338|PISD|23761|phosphatidylserine decarboxylase##CU013140|PISD|23761|phosphatidylserine decarboxylase##CU013428|PISD|23761|phosphatidylserine decarboxylase##CR456540|PISD|23761|phosphatidylserine decarboxylase	0.999842	0.0	denovo_WM_7:-41:0.295	denovo_WM_7:-42:0.295	denovo_WM_7:-43:0.295
chr15	57360176	57360311	reg1005261.p2	7.096	+	TSC_hg19_v1_chr15_+_57210977 M83233	-149243	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-149341	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	-149375	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	151424	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	308474	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	523922	+	M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12##AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1	0.990212	0.0	denovo_WM_7:3:0.990
chr15	75673396	75673515	reg1004651.p2	7.095	+	AK225145 TSC_hg19_v1_chr15_-_75660949 AK294892 AK301170 AK311065	-12498	-	TSC_hg19_v1_chr15_-_75660937 CU690718 AL136876 BC080191 AK295265 BC050550 BC038594 NM_006715	-12533	-	AB209141 TSC_hg19_v1_chr15_-_75660874	-12594	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	70447	-	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	70602	-	AL832463 NM_001145357	74668	-	AK225145|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK294892|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK301170|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK311065|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AL136876|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC080191|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK295265|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC050550|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC038594|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##NM_006715|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AB209141|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)	0.995086	0.0	
chr2	179896642	179896783	reg1004612.p1	7.095	+	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	-224609	-	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	-237011	-	TSC_hg19_v1_chr2_+_179387947 AK093733	-508752	+	AL832777 NM_173648	18073	-	AY209190 TSC_hg19_v1_chr2_-_180129277 AK096232 NM_178123 BC047578	232693	-	AK057999 NM_001113398	530602	-	X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin##X98114|TTN|7273|titin##X98115|TTN|7273|titin##AK093733|LOC100506866|100506866|uncharacterized LOC100506866##AL832777|CCDC141|285025|coiled-coil domain containing 141##NM_173648|CCDC141|285025|coiled-coil domain containing 141##AY209190|SESTD1|91404|SEC14 and spectrin domains 1##AK096232|SESTD1|91404|SEC14 and spectrin domains 1##NM_178123|SESTD1|91404|SEC14 and spectrin domains 1##BC047578|SESTD1|91404|SEC14 and spectrin domains 1##AK057999|ZNF385B|151126|zinc finger protein 385B##NM_001113398|ZNF385B|151126|zinc finger protein 385B	0.0	0.0	
chr5	179720106	179720226	reg1005338.p1	7.095	+	TSC_hg19_v1_chr5_-_179719061 NM_001135044 NM_002752 NM_139068 NM_139069 NM_139070	-1090	-	TSC_hg19_v1_chr5_-_179718968 AK289638	-1199	-	TSC_hg19_v1_chr5_-_179636160 NM_175062 BC036802	-83990	-	AB016789 NM_005110 BC000012 TSC_hg19_v1_chr5_-_179780333 AK022507 AK314551	60159	-	TSC_hg19_v1_chr5_+_179921385 NM_015455	201227	+	TSC_hg19_v1_chr5_+_179921452 AB033020 BC152469	201292	+	NM_001135044|MAPK9|5601|mitogen-activated protein kinase 9##NM_002752|MAPK9|5601|mitogen-activated protein kinase 9##NM_139068|MAPK9|5601|mitogen-activated protein kinase 9##NM_139069|MAPK9|5601|mitogen-activated protein kinase 9##NM_139070|MAPK9|5601|mitogen-activated protein kinase 9##AK289638|MAPK9|5601|mitogen-activated protein kinase 9##NM_175062|RASGEF1C|255426|RasGEF domain family, member 1C##BC036802|RASGEF1C|255426|RasGEF domain family, member 1C##AB016789|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_005110|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##BC000012|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK022507|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK314551|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_015455|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##AB033020|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##BC152469|CNOT6|57472|CCR4-NOT transcription complex, subunit 6	1.991934	0.0	
chr12	99646993	99647110	reg1005248.p1	7.094	+	AK294191 NM_001204067	-98184	-	BC026313 AF164792 BC142669 BC150204 AK289768 NM_001204068 NM_001204069 NM_001204070 NM_020140 NM_181670 BC068451 NM_001204066	-98494	-	AY356353 AK315954 AM980945 AK294994 TSC_hg19_v1_chr12_-_99288638 AK295988 NM_001204065 NM_001204079 NM_001204080 NM_001204081	-358464	-	NM_153364 AK312767 BC031221	394479	+	NM_152788	731380	-	BC127017 AK125813 TSC_hg19_v1_chr12_-_100536637 BC014891	889498	-	AK294191|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204067|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC026313|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AF164792|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC142669|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC150204|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK289768|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204068|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204069|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204070|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_020140|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_181670|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC068451|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204066|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AY356353|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK315954|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AM980945|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK294994|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK295988|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204065|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204079|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204080|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204081|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_153364|FAM71C|196472|family with sequence similarity 71, member C##AK312767|FAM71C|196472|family with sequence similarity 71, member C##BC031221|FAM71C|196472|family with sequence similarity 71, member C##NM_152788|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC127017|UHRF1BP1L|23074|UHRF1 binding protein 1-like##AK125813|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC014891|UHRF1BP1L|23074|UHRF1 binding protein 1-like	0.998975	0.152241	denovo_WM_7:-40:0.219	denovo_WM_7:-41:0.750
chr5	64399325	64399467	reg1005427.p1	7.094	+	BX647971 TSC_hg19_v1_chr5_+_64064766 NM_005869 AK225161 AK225105 AK308223 AK312954 AY358569 AF039692 BC012117	-334612	+	TSC_hg19_v1_chr5_-_64064491 AK094073 AX748442 NM_173829	-334892	-	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	-334950	-	AY692424 NM_197941 AY692422	378328	-	TSC_hg19_v1_chr5_-_64858996 AF315941 BC005400 BC008504 NM_022145	459568	-	TSC_hg19_v1_chr5_+_64859122 AK025679 AK093675 AK300022 AK298175 AK301654 NM_015342 BC015385 AB384434 CU677289 GQ129262 GQ129263 D38552	459722	+	BX647971|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##NM_005869|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225161|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225105|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK308223|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK312954|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AY358569|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AF039692|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##BC012117|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK094073|SREK1IP1|285672|SREK1-interacting protein 1##NM_173829|SREK1IP1|285672|SREK1-interacting protein 1##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1##AY692424|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##NM_197941|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##AY692422|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##AF315941|CENPK|64105|centromere protein K##BC005400|CENPK|64105|centromere protein K##BC008504|CENPK|64105|centromere protein K##NM_022145|CENPK|64105|centromere protein K##AK025679|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK300022|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK298175|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK301654|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##NM_015342|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##BC015385|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129262|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129263|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##D38552|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1	0.0	0.0	
chr1	235268682	235268855	reg1005129.p1	7.093	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-372994	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-523522	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-524910	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	23321	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	23463	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	55795	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.999917	0.0	
chr11	6704725	6704857	reg1006142.p1	7.092	+	TSC_hg19_v1_chr11_-_6704541 CR457177 DQ891581 DQ894774 DQ895036 AB463889 BC012306 AK026857 AF164797 AF141338 NM_022061	-217	-	TSC_hg19_v1_chr11_-_6676982 AB053446 NM_003737	-27828	-	TSC_hg19_v1_chr11_-_6643809 BC038382	-60930	-	NM_001004490 BC140734	85445	-	BC151143 NM_001004489	101456	+	BC101489 BC101491 NM_003696	112284	-	CR457177|MRPL17|63875|mitochondrial ribosomal protein L17##DQ891581|MRPL17|63875|mitochondrial ribosomal protein L17##DQ894774|MRPL17|63875|mitochondrial ribosomal protein L17##DQ895036|MRPL17|63875|mitochondrial ribosomal protein L17##BC012306|MRPL17|63875|mitochondrial ribosomal protein L17##AK026857|MRPL17|63875|mitochondrial ribosomal protein L17##AF164797|MRPL17|63875|mitochondrial ribosomal protein L17##AF141338|MRPL17|63875|mitochondrial ribosomal protein L17##NM_022061|MRPL17|63875|mitochondrial ribosomal protein L17##AB053446|DCHS1|8642|dachsous 1 (Drosophila)##NM_003737|DCHS1|8642|dachsous 1 (Drosophila)##BC038382|DCHS1|8642|dachsous 1 (Drosophila)##NM_001004490|OR2AG2|338755|olfactory receptor, family 2, subfamily AG, member 2##BC140734|OR2AG2|338755|olfactory receptor, family 2, subfamily AG, member 2##BC151143|OR2AG1|144125|olfactory receptor, family 2, subfamily AG, member 1##NM_001004489|OR2AG1|144125|olfactory receptor, family 2, subfamily AG, member 1##BC101489|OR6A2|8590|olfactory receptor, family 6, subfamily A, member 2##BC101491|OR6A2|8590|olfactory receptor, family 6, subfamily A, member 2##NM_003696|OR6A2|8590|olfactory receptor, family 6, subfamily A, member 2	0.0	0.183745	
chr18	57549598	57549748	reg1006069.p1	7.092	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-185023	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-185082	-	TSC_hg19_v1_chr18_-_57026487 DQ891254 DQ894440 U09716 AK223208 AK225108 AK312869 BC008401 BC032330 BC017858 X71661 AK301244 NM_005570	-523187	-	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	17556	+	AK314130 NM_005912	490327	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1608101	+	NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##DQ891254|LMAN1|3998|lectin, mannose-binding, 1##DQ894440|LMAN1|3998|lectin, mannose-binding, 1##U09716|LMAN1|3998|lectin, mannose-binding, 1##AK223208|LMAN1|3998|lectin, mannose-binding, 1##AK225108|LMAN1|3998|lectin, mannose-binding, 1##AK312869|LMAN1|3998|lectin, mannose-binding, 1##BC008401|LMAN1|3998|lectin, mannose-binding, 1##BC032330|LMAN1|3998|lectin, mannose-binding, 1##BC017858|LMAN1|3998|lectin, mannose-binding, 1##X71661|LMAN1|3998|lectin, mannose-binding, 1##AK301244|LMAN1|3998|lectin, mannose-binding, 1##NM_005570|LMAN1|3998|lectin, mannose-binding, 1##NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2	0.011801	0.0	
chr2	80688761	80688867	reg1004792.p1	7.092	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-156971	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-157089	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-157289	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3997556	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3997581	-	NM_003849	3997771	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.018082	0.0	
chr2	55842955	55843111	reg1004929.p1	7.091	+	TSC_hg19_v1_chr2_+_55746786 AY358097 NM_080667 AK309764 AK308776 BC010011 CU679569 DQ893082 DQ896343	-96207	+	TSC_hg19_v1_chr2_-_55646993 BC014905 BC041160 BC142646 BC142700 AK025723 NM_001135597 NM_018084	-196029	-	TSC_hg19_v1_chr2_-_55559749 BC056885	-283247	-	TSC_hg19_v1_chr2_-_55844739 AB037808 BC006215 BC060855 AK296481 AK056036 NM_001122964 NM_020463 BC032531	1761	-	TSC_hg19_v1_chr2_-_55844909 BC045714	1878	-	TSC_hg19_v1_chr2_-_55846016 AK056503	2985	-	AY358097|CCDC104|112942|coiled-coil domain containing 104##NM_080667|CCDC104|112942|coiled-coil domain containing 104##AK309764|CCDC104|112942|coiled-coil domain containing 104##AK308776|CCDC104|112942|coiled-coil domain containing 104##BC010011|CCDC104|112942|coiled-coil domain containing 104##DQ893082|CCDC104|112942|coiled-coil domain containing 104##DQ896343|CCDC104|112942|coiled-coil domain containing 104##BC014905|CCDC88A|55704|coiled-coil domain containing 88A##BC041160|CCDC88A|55704|coiled-coil domain containing 88A##BC142646|CCDC88A|55704|coiled-coil domain containing 88A##BC142700|CCDC88A|55704|coiled-coil domain containing 88A##AK025723|CCDC88A|55704|coiled-coil domain containing 88A##NM_001135597|CCDC88A|55704|coiled-coil domain containing 88A##NM_018084|CCDC88A|55704|coiled-coil domain containing 88A##BC056885|CCDC88A|55704|coiled-coil domain containing 88A##AB037808|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC006215|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC060855|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##AK296481|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##AK056036|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##NM_001122964|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##NM_020463|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC032531|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##BC045714|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)##AK056503|SMEK2|57223|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	0.995235	0.0	
chr17	38646054	38646171	reg1005196.p1	7.090	+	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-46293	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-71988	-	TSC_hg19_v1_chr17_-_38520951 AK125254 NM_152219	-125166	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	11734	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	75606	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	157958	-	NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AK125254|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_152219|GJD3|125111|gap junction protein, delta 3, 31.9kDa##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.997096	0.0	denovo_WM_7:-54:0.313	denovo_WM_7:-55:0.313	denovo_WM_7:-56:0.313
chr16	68071827	68071980	reg1006883.p1	7.089	+	NM_018380	-14134	-	AK290578 TSC_hg19_v1_chr16_+_68057186 AB101210 AK296663 AK000406 BC006527 NM_017803	-14728	+	TSC_hg19_v1_chr16_-_68057129 BC014517	-14775	-	TSC_hg19_v1_chr16_+_68119279 NM_004555 NM_173163 NM_173165	47351	+	TSC_hg19_v1_chr16_+_68119335 AB209824	47435	+	TSC_hg19_v1_chr16_+_68119350 L41067	47466	+	NM_018380|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28##AK290578|DUS2L|54920|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)##AB101210|DUS2L|54920|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)##AK296663|DUS2L|54920|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)##AK000406|DUS2L|54920|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)##BC006527|DUS2L|54920|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)##NM_017803|DUS2L|54920|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)##BC014517|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28##NM_004555|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##NM_173163|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##NM_173165|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##AB209824|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3##L41067|NFATC3|4775|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	0.181497	0.0	
chr7	100293409	100293589	reg1002956.p2	7.089	+	NM_022574	-6630	-	TSC_hg19_v1_chr7_+_100273776 M36429 AB528576 CU679597 AF501883 CR541729	-19667	+	M16538 TSC_hg19_v1_chr7_+_100271486 AK291592	-22005	+	TSC_hg19_v1_chr7_+_100303755 NM_005837 BC001430 U94316	10221	+	NM_000799 X02157 BC093628 BC111937 BC143225 AB463610 JN849371	25013	+	AF332975 AF332976 AF332977 AF332978 AF332979 AF332980 NM_003386 NM_173059	37749	+	NM_022574|GIGYF1|64599|GRB10 interacting GYF protein 1##M36429|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##AF501883|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##CR541729|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##M16538|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##AK291592|GNB2|2783|guanine nucleotide binding protein (G protein), beta polypeptide 2##NM_005837|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##BC001430|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##U94316|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##NM_000799|EPO|2056|erythropoietin##X02157|EPO|2056|erythropoietin##BC093628|EPO|2056|erythropoietin##BC111937|EPO|2056|erythropoietin##BC143225|EPO|2056|erythropoietin##JN849371|EPO|2056|erythropoietin##AF332975|ZAN|7455|zonadhesin##AF332976|ZAN|7455|zonadhesin##AF332977|ZAN|7455|zonadhesin##AF332978|ZAN|7455|zonadhesin##AF332979|ZAN|7455|zonadhesin##AF332980|ZAN|7455|zonadhesin##NM_003386|ZAN|7455|zonadhesin##NM_173059|ZAN|7455|zonadhesin	0.0	0.0	
chr10	61846691	61846836	reg1002775.p1	7.088	+	D90075 BC064391 TSC_hg19_v1_chr10_-_61666249 BC036757 BC022284 AK292593 NM_005436	-180439	-	AB590767 TSC_hg19_v1_chr10_-_61666205 S72869	-180562	-	AK126643 TSC_hg19_v1_chr10_-_61469461 NM_194298	-377039	-	AK292927 AK092527 NM_001149	53953	-	U13616 NM_020987	302797	-	AB209308 TSC_hg19_v1_chr10_-_62332715 AK126851 NM_001204404	485927	-	BC064391|CCDC6|8030|coiled-coil domain containing 6##BC036757|CCDC6|8030|coiled-coil domain containing 6##BC022284|CCDC6|8030|coiled-coil domain containing 6##AK292593|CCDC6|8030|coiled-coil domain containing 6##NM_005436|CCDC6|8030|coiled-coil domain containing 6##S72869|CCDC6|8030|coiled-coil domain containing 6##AK126643|LOC100129721|100129721|uncharacterized LOC100129721##NM_194298|SLC16A9|220963|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)##AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##U13616|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_020987|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AB209308|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK126851|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001204404|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	2.800449	0.0	denovo_WM_7:-2:0.249	denovo_WM_7:-3:0.249	denovo_WM_7:-4:0.249	denovo_WM_7:-5:0.249	denovo_WM_7:-27:0.386	denovo_WM_7:-29:0.248	denovo_WM_7:-76:0.442	denovo_WM_7:-77:0.442
chr1	167599889	167600046	reg1003999.p1	7.088	+	TSC_hg19_v1_chr1_+_167599557 AL137762 BC101536 BC101562 BC143428	-398	+	AF545852 TSC_hg19_v1_chr1_+_167599495 NM_052862 AK130798	-554	+	TSC_hg19_v1_chr1_-_167523043 NM_003851	-76904	-	TSC_hg19_v1_chr1_+_167691226 NM_001146191 NM_003953 NM_024569 AK297112 AK075334 AK307250 AK291249 AY359019 AF181660 AF478447 BC000984 BC007881 AF095727 AF087020 AF092425 AF095726 AK315546 AB527648 AF239756 BT019542 CR542160 HQ447352	91361	+	BC117366 BC117372 AF176813 AF299350 AF331033 AK310395 AK310531 AK302884 NM_001167749 NM_018417	283380	-	AB528078 AM393085 CR407632 CR533473 TSC_hg19_v1_chr1_-_167905197 BC104157 BC104158	305175	-	AL137762|RCSD1|92241|RCSD domain containing 1##BC101536|RCSD1|92241|RCSD domain containing 1##BC101562|RCSD1|92241|RCSD domain containing 1##BC143428|RCSD1|92241|RCSD domain containing 1##AF545852|RCSD1|92241|RCSD domain containing 1##NM_052862|RCSD1|92241|RCSD domain containing 1##NM_003851|CREG1|8804|cellular repressor of E1A-stimulated genes 1##NM_001146191|MPZL1|9019|myelin protein zero-like 1##NM_003953|MPZL1|9019|myelin protein zero-like 1##NM_024569|MPZL1|9019|myelin protein zero-like 1##AK297112|MPZL1|9019|myelin protein zero-like 1##AK075334|MPZL1|9019|myelin protein zero-like 1##AK307250|MPZL1|9019|myelin protein zero-like 1##AK291249|MPZL1|9019|myelin protein zero-like 1##AY359019|MPZL1|9019|myelin protein zero-like 1##AF181660|MPZL1|9019|myelin protein zero-like 1##AF478447|MPZL1|9019|myelin protein zero-like 1##BC000984|MPZL1|9019|myelin protein zero-like 1##BC007881|MPZL1|9019|myelin protein zero-like 1##AF095727|MPZL1|9019|myelin protein zero-like 1##AF087020|MPZL1|9019|myelin protein zero-like 1##AF092425|MPZL1|9019|myelin protein zero-like 1##AF095726|MPZL1|9019|myelin protein zero-like 1##AK315546|MPZL1|9019|myelin protein zero-like 1##AF239756|MPZL1|9019|myelin protein zero-like 1##BT019542|MPZL1|9019|myelin protein zero-like 1##CR542160|MPZL1|9019|myelin protein zero-like 1##HQ447352|MPZL1|9019|myelin protein zero-like 1##BC117366|ADCY10|55811|adenylate cyclase 10 (soluble)##BC117372|ADCY10|55811|adenylate cyclase 10 (soluble)##AF176813|ADCY10|55811|adenylate cyclase 10 (soluble)##AF299350|ADCY10|55811|adenylate cyclase 10 (soluble)##AF331033|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310395|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310531|ADCY10|55811|adenylate cyclase 10 (soluble)##AK302884|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_001167749|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_018417|ADCY10|55811|adenylate cyclase 10 (soluble)##AM393085|BRP44|25874|brain protein 44##CR407632|BRP44|25874|brain protein 44##CR533473|BRP44|25874|brain protein 44##BC104157|BRP44|25874|brain protein 44##BC104158|BRP44|25874|brain protein 44	1.999281	0.0	denovo_WM_7:0:0.294	denovo_WM_7:-1:0.428	denovo_WM_7:14:0.291	denovo_WM_7:15:0.425
chr4	26788635	26788814	reg1005488.p2	7.088	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-203044	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-296739	-	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-466042	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	73816	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3933275	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3933470	+	NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7	0.99692	0.0	
chr12	57080749	57080893	reg1004700.p1	7.087	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-40995	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-41066	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-50695	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	1029	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	1119	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	1180	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	1.706996	0.0	denovo_WM_7:-104:0.689
chr3	44042306	44042418	reg1005096.p1	7.086	+	TSC_hg19_v1_chr3_+_43732466 NM_016006 BC021958 AK313811 AF151816 CU692422 DQ891175 DQ894357	-309941	+	TSC_hg19_v1_chr3_-_43663467 AK131223 AK295969 AK297949 AK096302 NM_001204831 NM_001204832 NM_001204833 NM_001204834 NM_018075	-378849	-	TSC_hg19_v1_chr3_-_43663446 AL832508 AK292368 BC038855	-378924	-	AK093476 AX748152 NM_001145030	241015	+	TSC_hg19_v1_chr3_+_44379620 AK292756 NM_001029840 BC009400	337268	+	TSC_hg19_v1_chr3_+_44379944 AK056593 NM_001029839 NM_173826 BC062587	337585	+	NM_016006|ABHD5|51099|abhydrolase domain containing 5##BC021958|ABHD5|51099|abhydrolase domain containing 5##AK313811|ABHD5|51099|abhydrolase domain containing 5##AF151816|ABHD5|51099|abhydrolase domain containing 5##DQ891175|ABHD5|51099|abhydrolase domain containing 5##DQ894357|ABHD5|51099|abhydrolase domain containing 5##AK131223|ANO10|55129|anoctamin 10##AK295969|ANO10|55129|anoctamin 10##AK297949|ANO10|55129|anoctamin 10##AK096302|ANO10|55129|anoctamin 10##NM_001204831|ANO10|55129|anoctamin 10##NM_001204832|ANO10|55129|anoctamin 10##NM_001204833|ANO10|55129|anoctamin 10##NM_001204834|ANO10|55129|anoctamin 10##NM_018075|ANO10|55129|anoctamin 10##AL832508|ANO10|55129|anoctamin 10##AK292368|ANO10|55129|anoctamin 10##BC038855|ANO10|55129|anoctamin 10##AK093476|C3orf77|375337|chromosome 3 open reading frame 77##NM_001145030|C3orf77|375337|chromosome 3 open reading frame 77##AK292756|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029840|C3orf23|285343|chromosome 3 open reading frame 23##BC009400|C3orf23|285343|chromosome 3 open reading frame 23##AK056593|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029839|C3orf23|285343|chromosome 3 open reading frame 23##NM_173826|C3orf23|285343|chromosome 3 open reading frame 23##BC062587|C3orf23|285343|chromosome 3 open reading frame 23	0.993941	0.0	denovo_WM_7:56:0.459	denovo_WM_7:57:0.535
chr1	29079897	29080061	reg1004712.p2	7.084	+	TSC_hg19_v1_chr1_+_29063503 AK303833 NM_001172828 AF432214 AF155095 AF192968 DQ892157 DQ895352 CU678040 AB451335 AB451484	-16442	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	-16696	+	BC001473 AK315195 AK315436 AF173868 AF203694 AK023126 TSC_hg19_v1_chr1_+_28995361	-84651	+	NM_000911 U07882	58674	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	133612	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	133678	+	AK303833|YTHDF2|51441|YTH domain family, member 2##NM_001172828|YTHDF2|51441|YTH domain family, member 2##AF432214|YTHDF2|51441|YTH domain family, member 2##AF155095|YTHDF2|51441|YTH domain family, member 2##AF192968|YTHDF2|51441|YTH domain family, member 2##DQ892157|YTHDF2|51441|YTH domain family, member 2##DQ895352|YTHDF2|51441|YTH domain family, member 2##AB451335|YTHDF2|51441|YTH domain family, member 2##AB451484|YTHDF2|51441|YTH domain family, member 2##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2##BC001473|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315195|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315436|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF173868|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF203694|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK023126|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_000911|OPRD1|4985|opioid receptor, delta 1##U07882|OPRD1|4985|opioid receptor, delta 1##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	1.994921	0.0	
chr1	38638793	38638957	reg1005475.p1	7.084	+	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	-126426	-	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-160445	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-160490	+	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	686511	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	700141	-	AK312811 BC051675 AK123051 NM_030772	708402	-	L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein##AK312811|GJA9|81025|gap junction protein, alpha 9, 59kDa##BC051675|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##AK123051|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##NM_030772|GJA9|81025|gap junction protein, alpha 9, 59kDa	0.985477	0.0	denovo_WM_7:-20:0.586	denovo_WM_7:-21:0.227
chr16	48387580	48387753	reg1004954.p1	7.084	+	AK074775 AK127125 TSC_hg19_v1_chr16_+_48278216 BC093910 BC093912 BC143246 AK027544 AK294779	-109396	+	TSC_hg19_v1_chr16_+_48278210 AJ548761 NM_031490	-109472	+	AF367202 AF411579 NM_032583 NM_145186	-118579	-	BC042550 TSC_hg19_v1_chr16_-_48399765	12094	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	12125	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	31586	-	AK074775|LONP2|83752|lon peptidase 2, peroxisomal##AK127125|LONP2|83752|lon peptidase 2, peroxisomal##BC093910|LONP2|83752|lon peptidase 2, peroxisomal##BC093912|LONP2|83752|lon peptidase 2, peroxisomal##BC143246|LONP2|83752|lon peptidase 2, peroxisomal##AK027544|LONP2|83752|lon peptidase 2, peroxisomal##AK294779|LONP2|83752|lon peptidase 2, peroxisomal##AJ548761|LONP2|83752|lon peptidase 2, peroxisomal##NM_031490|LONP2|83752|lon peptidase 2, peroxisomal##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)	0.0	0.586291	CTCF.p2:-10:0.576
chr2	219576458	219576586	reg1004966.p2	7.084	+	TSC_hg19_v1_chr2_+_219575684 D79995	-815	+	TSC_hg19_v1_chr2_+_219575602 AK302728 NM_014640 AK291770 BC021707 AL833511	-929	+	TSC_hg19_v1_chr2_+_219536837 NM_001243313 NM_015690 AB033104 BC026158	-39731	+	TSC_hg19_v1_chr2_+_219646471 AK226039 NM_000784 BC017044	69952	+	X59812 TSC_hg19_v1_chr2_+_219646869 AK290418 M62401 BC040430 BC051851 AK310782 CU690866 AY178622	70369	+	AJ249977 BC098102 BC098255 BC098277 BC098306 NM_017431 AK300078 AK300687 AK309865	119996	-	D79995|TTLL4|9654|tubulin tyrosine ligase-like family, member 4##AK302728|TTLL4|9654|tubulin tyrosine ligase-like family, member 4##NM_014640|TTLL4|9654|tubulin tyrosine ligase-like family, member 4##AK291770|TTLL4|9654|tubulin tyrosine ligase-like family, member 4##BC021707|TTLL4|9654|tubulin tyrosine ligase-like family, member 4##AL833511|TTLL4|9654|tubulin tyrosine ligase-like family, member 4##NM_001243313|STK36|27148|serine/threonine kinase 36##NM_015690|STK36|27148|serine/threonine kinase 36##AB033104|STK36|27148|serine/threonine kinase 36##BC026158|STK36|27148|serine/threonine kinase 36##AK226039|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##NM_000784|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##BC017044|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##X59812|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##AK290418|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##M62401|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##BC040430|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##BC051851|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##AK310782|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##AY178622|CYP27A1|1593|cytochrome P450, family 27, subfamily A, polypeptide 1##AJ249977|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##BC098102|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##BC098255|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##BC098277|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##BC098306|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##NM_017431|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##AK300078|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##AK300687|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit##AK309865|PRKAG3|53632|protein kinase, AMP-activated, gamma 3 non-catalytic subunit	0.0	0.0	
chr22	24141213	24141389	reg1002476.p1	7.084	+	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	-12052	+	AK075448 AK129792 NM_005940 X57766 BC057788	-26256	+	TSC_hg19_v1_chr22_-_24110129 BC053570 AK289560 BC065232 NM_213720	-31189	-	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	39884	-	AF443201 AJ271290 NM_001024938 NM_030807 AK314502 AK315937 AK075467 AK296169 AK308602 BC063525 BC100807 BC100808 BC100809 BC100810 AK300196 TSC_hg19_v1_chr22_+_24199338	57897	+	NM_001024939 TSC_hg19_v1_chr22_+_24200061 AK304409 AK308589 AK316049 CR456373 AB463269 CU013078 CU013366	58812	+	AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC053570|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK289560|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##BC065232|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##NM_213720|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3##AF443201|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AJ271290|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024938|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_030807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK314502|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK315937|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK075467|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK296169|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308602|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC063525|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100808|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100809|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100810|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK300196|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024939|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK304409|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308589|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK316049|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CR456373|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013078|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013366|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11	0.999297	0.0	
chr2	44461651	44461799	reg1006503.p1	7.083	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-65615	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-65710	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-238586	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	40910	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	125145	-	DQ023503 DQ023504 DQ023505 NM_006036	126087	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.997281	0.847546	CTCF.p2:-30:0.848	denovo_WM_7:-60:0.745
chr3	46036327	46036469	reg1005170.p1	7.083	+	NM_006564 Y13248	-51426	+	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	-108343	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-152803	-	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	923	-	AB189434 AB189435 NM_001024644 NM_005283	32580	-	BC064991 TSC_hg19_v1_chr3_-_46249804 L10918 BC051306 NM_001295	213411	-	NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1##BC064991|CCR1|1230|chemokine (C-C motif) receptor 1##L10918|CCR1|1230|chemokine (C-C motif) receptor 1##BC051306|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001295|CCR1|1230|chemokine (C-C motif) receptor 1	0.621003	0.0	denovo_WM_7:-9:0.448
chr1	51655183	51655314	reg1005520.p2	7.081	+	AK130995 NM_001136508	-87346	+	TSC_hg19_v1_chr1_+_51435925 U17074 CU674290 AB587581 CR450289 DQ891516 DQ894707	-219273	+	NM_078626	-219607	+	TSC_hg19_v1_chr1_+_51701939 AK293047	46679	+	TSC_hg19_v1_chr1_+_51701944 NM_014372	46701	+	BC036670 TSC_hg19_v1_chr1_+_51701971 BC047654	46726	+	AK130995|C1orf185|284546|chromosome 1 open reading frame 185##NM_001136508|C1orf185|284546|chromosome 1 open reading frame 185##U17074|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##CR450289|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##DQ891516|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##DQ894707|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##NM_078626|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##AK293047|RNF11|26994|ring finger protein 11##NM_014372|RNF11|26994|ring finger protein 11##BC036670|RNF11|26994|ring finger protein 11##BC047654|RNF11|26994|ring finger protein 11	0.846186	0.168141	denovo_WM_7:-43:0.754
chr2	202867953	202868133	reg1000540.p2	7.081	+	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	-196751	+	NM_001135745 NM_020919	-222149	-	TSC_hg19_v1_chr2_-_202645657 BC071576 AB053305 AB053306 AF391100 AK023024 BC029174 AK291029	-222378	-	AB017365 NM_003507 AB010881 BC015915 CU677505	31296	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	235225	-	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	262413	+	AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##NM_001135745|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##NM_020919|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC071576|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053305|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053306|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AF391100|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK023024|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC029174|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK291029|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)	0.058353	0.0	
chrX	51546650	51546792	reg1004646.p1	7.081	+	NM_001005332 TSC_hg19_v1_chrX_+_51546171	-557	+	TSC_hg19_v1_chrX_+_51486493 NM_018094 AK225671 BC036077 AK298868 AK023155 AK001303	-60210	+	BC009942 TSC_hg19_v1_chrX_-_51239444 NM_018159	-307279	-	TSC_hg19_v1_chrX_+_51636723 NM_001005333 NM_006986 AF258554 AK298574 AK308706 BC014070 AK314053 AK074092 AF217963 AF300328	89982	+	BC063838 BC081566 AL136582 AB040527 AB040528 AB040529 NM_001098800 AK098830 AK289458 AK308365 BC001207 AB058762 NM_001242362 NM_030801 NM_177535 NM_177537	265587	-	NM_001242362 NM_030801 NM_177535 NM_177537 AB058762 BC001207 AK098830 AK289458 AK308365 AB040527 AB040528 AB040529 NM_001098800 AL136582 BC081566 BC063838	381256	+	NM_001005332|MAGED1|9500|melanoma antigen family D, 1##NM_018094|GSPT2|23708|G1 to S phase transition 2##BC036077|GSPT2|23708|G1 to S phase transition 2##AK298868|GSPT2|23708|G1 to S phase transition 2##AK023155|GSPT2|23708|G1 to S phase transition 2##AK001303|GSPT2|23708|G1 to S phase transition 2##BC009942|NUDT11|55190|nudix (nucleoside diphosphate linked moiety X)-type motif 11##NM_018159|NUDT11|55190|nudix (nucleoside diphosphate linked moiety X)-type motif 11##NM_001005333|MAGED1|9500|melanoma antigen family D, 1##NM_006986|MAGED1|9500|melanoma antigen family D, 1##AF258554|MAGED1|9500|melanoma antigen family D, 1##AK298574|MAGED1|9500|melanoma antigen family D, 1##AK308706|MAGED1|9500|melanoma antigen family D, 1##BC014070|MAGED1|9500|melanoma antigen family D, 1##AK314053|MAGED1|9500|melanoma antigen family D, 1##AK074092|MAGED1|9500|melanoma antigen family D, 1##AF217963|MAGED1|9500|melanoma antigen family D, 1##AF300328|MAGED1|9500|melanoma antigen family D, 1##BC063838|MAGED4B|81557|melanoma antigen family D, 4B##BC081566|MAGED4B|81557|melanoma antigen family D, 4B##AL136582|MAGED4B|81557|melanoma antigen family D, 4B##AB040527|MAGED4B|81557|melanoma antigen family D, 4B##AB040528|MAGED4B|81557|melanoma antigen family D, 4B##AB040529|MAGED4B|81557|melanoma antigen family D, 4B##NM_001098800|MAGED4|728239|melanoma antigen family D, 4##AK098830|MAGED4B|81557|melanoma antigen family D, 4B##AK289458|MAGED4B|81557|melanoma antigen family D, 4B##AK308365|MAGED4B|81557|melanoma antigen family D, 4B##BC001207|MAGED4B|81557|melanoma antigen family D, 4B##AB058762|MAGED4B|81557|melanoma antigen family D, 4B##NM_001242362|MAGED4B|81557|melanoma antigen family D, 4B##NM_030801|MAGED4B|81557|melanoma antigen family D, 4B##NM_177535|MAGED4B|81557|melanoma antigen family D, 4B##NM_177537|MAGED4B|81557|melanoma antigen family D, 4B##NM_001242362|MAGED4B|81557|melanoma antigen family D, 4B##NM_030801|MAGED4B|81557|melanoma antigen family D, 4B##NM_177535|MAGED4B|81557|melanoma antigen family D, 4B##NM_177537|MAGED4B|81557|melanoma antigen family D, 4B##AB058762|MAGED4B|81557|melanoma antigen family D, 4B##BC001207|MAGED4B|81557|melanoma antigen family D, 4B##AK098830|MAGED4B|81557|melanoma antigen family D, 4B##AK289458|MAGED4B|81557|melanoma antigen family D, 4B##AK308365|MAGED4B|81557|melanoma antigen family D, 4B##AB040527|MAGED4B|81557|melanoma antigen family D, 4B##AB040528|MAGED4B|81557|melanoma antigen family D, 4B##AB040529|MAGED4B|81557|melanoma antigen family D, 4B##NM_001098800|MAGED4|728239|melanoma antigen family D, 4##AL136582|MAGED4B|81557|melanoma antigen family D, 4B##BC081566|MAGED4B|81557|melanoma antigen family D, 4B##BC063838|MAGED4B|81557|melanoma antigen family D, 4B	1.041836	0.33565	CTCF.p2:-85:0.336	denovo_WM_7:107:0.228
chr12	129325605	129325753	reg1004946.p1	7.080	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	-17236	-	NM_001136103	-573732	+	NM_052907	-3514518	+	BC043528 TSC_hg19_v1_chr12_+_129337985	12305	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	12408	+	BC114626 BC114936 NM_133448 AB061814	1062532	-	BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D	0.945601	0.0	denovo_WM_7:-8:0.549	denovo_WM_7:-9:0.201
chr7	76958228	76958385	reg1004176.p1	7.079	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-129170	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-206360	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-701759	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	87412	-	TSC_hg19_v1_chr7_+_77166392 BC050008	208072	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	208500	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.996525	0.0	denovo_WM_7:31:0.879
chr20	42287435	42287599	reg1005832.p1	7.078	+	TSC_hg19_v1_chr20_+_42219576 NM_016004 BC021086 BC039831 AK301915 AF151811 AK001436	-67905	+	AF186470 NM_016276	-92781	+	NM_001199264 BC065511 AK289596	-93703	+	NM_002466 TSC_hg19_v1_chr20_+_42295720 BC007585	8204	+	TSC_hg19_v1_chr20_+_42295753 AK303249 AK314791 BC053555 X13293 AB528519 AK223482 DQ893522 DQ895945	8318	+	BC040049 AK058060 NM_001008901 NM_176791	68086	-	NM_016004|IFT52|51098|intraflagellar transport 52 homolog (Chlamydomonas)##BC039831|IFT52|51098|intraflagellar transport 52 homolog (Chlamydomonas)##AK301915|IFT52|51098|intraflagellar transport 52 homolog (Chlamydomonas)##AF151811|IFT52|51098|intraflagellar transport 52 homolog (Chlamydomonas)##AK001436|IFT52|51098|intraflagellar transport 52 homolog (Chlamydomonas)##AF186470|SGK2|10110|serum/glucocorticoid regulated kinase 2##NM_016276|SGK2|10110|serum/glucocorticoid regulated kinase 2##NM_001199264|SGK2|10110|serum/glucocorticoid regulated kinase 2##BC065511|SGK2|10110|serum/glucocorticoid regulated kinase 2##AK289596|SGK2|10110|serum/glucocorticoid regulated kinase 2##NM_002466|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##BC007585|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##AK303249|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##AK314791|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##BC053555|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##X13293|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##AK223482|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##DQ893522|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##DQ895945|MYBL2|4605|v-myb myeloblastosis viral oncogene homolog (avian)-like 2##BC040049|GTSF1L|149699|gametocyte specific factor 1-like##AK058060|GTSF1L|149699|gametocyte specific factor 1-like##NM_001008901|GTSF1L|149699|gametocyte specific factor 1-like##NM_176791|GTSF1L|149699|gametocyte specific factor 1-like	0.99729	0.0	denovo_WM_7:24:0.378	denovo_WM_7:25:0.376	denovo_WM_7:26:0.216
chr9	132175439	132175533	reg1006400.p1	7.078	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	-92191	+	TSC_hg19_v1_chr9_-_131940541 NM_203434	-234946	-	TSC_hg19_v1_chr9_-_131940534 BC064028	-234979	-	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	75868	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	75955	+	BC112353 AK093122 AX747938 NM_199350	207551	-	AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##NM_203434|IER5L|389792|immediate early response 5-like##BC064028|IER5L|389792|immediate early response 5-like##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190##BC112353|C9orf50|375759|chromosome 9 open reading frame 50##AK093122|C9orf50|375759|chromosome 9 open reading frame 50##NM_199350|C9orf50|375759|chromosome 9 open reading frame 50	0.815291	0.0	denovo_WM_7:12:0.579
chr1	206303041	206303217	reg1004939.p1	7.077	+	AK122631 NM_001007544	-14483	-	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	-78768	+	BC035696 NM_001123168 BC137545 BC137546	-164213	+	NM_001910 NM_148964 AJ250716 AJ250717 BC042537 TSC_hg19_v1_chr1_+_206317529 J05036 AK292057 CU692090 AK298069	14402	+	NM_001193321 NM_001193322 NM_014002	340456	+	TSC_hg19_v1_chr1_+_206643818 AK093798 AK310737 AY660028	340677	+	AK122631|C1orf186|440712|chromosome 1 open reading frame 186##NM_001007544|C1orf186|440712|chromosome 1 open reading frame 186##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B##BC035696|FAM72A|729533|family with sequence similarity 72, member A##NM_001123168|FAM72A|729533|family with sequence similarity 72, member A##BC137545|FAM72A|729533|family with sequence similarity 72, member A##BC137546|FAM72B|653820|family with sequence similarity 72, member B##NM_001910|CTSE|1510|cathepsin E##NM_148964|CTSE|1510|cathepsin E##AJ250716|CTSE|1510|cathepsin E##AJ250717|CTSE|1510|cathepsin E##BC042537|CTSE|1510|cathepsin E##J05036|CTSE|1510|cathepsin E##AK292057|CTSE|1510|cathepsin E##AK298069|CTSE|1510|cathepsin E##NM_001193321|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193322|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_014002|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK093798|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK310737|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AY660028|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	1.991272	0.0	
chr6	21597103	21597258	reg1001916.p2	7.077	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-2808	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1062457	+	CR749285 NM_001243076	-1193147	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	69479	+	BC015850 NM_000948	700549	-	X54394 X54393 GQ305133 M58594 NM_001163558	705867	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	2.370252	0.0	denovo_WM_7:20:0.771	denovo_WM_7:44:0.523	denovo_WM_7:61:0.403
chr6_cox_hap2	4052364	4052483	reg1004941.p1	7.077	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.985112	0.0	denovo_WM_7:-23:0.565	denovo_WM_7:-26:0.376
chr7	151330251	151330364	reg1005041.p1	7.077	+	TSC_hg19_v1_chr7_-_151329284 BT007127 BC020540 AB025580 AF087875 AK314646 AK001887 NM_024429	-1027	-	TSC_hg19_v1_chr7_-_151216982 BC107705 AK125446 BC016155 NM_005614	-113322	-	TSC_hg19_v1_chr7_-_151216769 BC066307	-113538	-	BC068598 TSC_hg19_v1_chr7_-_151511929 NM_001040633	181633	-	AK074675 NM_016203	243955	-	NM_145292 AF440404 AK315667 AK093091 AX747915 BC022021 AF440400 BC025391	323191	+	BT007127|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC020540|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AB025580|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AF087875|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK314646|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK001887|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_024429|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC107705|RHEB|6009|Ras homolog enriched in brain##AK125446|RHEB|6009|Ras homolog enriched in brain##BC016155|RHEB|6009|Ras homolog enriched in brain##NM_005614|RHEB|6009|Ras homolog enriched in brain##BC066307|RHEB|6009|Ras homolog enriched in brain##BC068598|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_001040633|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK074675|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_016203|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_145292|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AF440404|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AK315667|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AK093091|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##BC022021|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AF440400|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##BC025391|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	0.667428	0.0	
chr3	101546590	101546739	reg1004394.p1	7.076	+	AK289689 NM_001134456	-48379	+	TSC_hg19_v1_chr3_+_101498080 BC009431	-48576	+	NM_145037 TSC_hg19_v1_chr3_+_101498054	-48616	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	296	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	21710	+	AY090780 NM_175056 BC143817	607203	+	AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C##NM_145037|FAM55C|91775|family with sequence similarity 55, member C##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1	0.0	0.0	
chr3	196444153	196444286	reg1005331.p2	7.075	+	TSC_hg19_v1_chr3_+_196439214 NM_001166304 NM_017861 AK000529 BC022542	-4960	+	AK058155 TSC_hg19_v1_chr3_-_196439156 BC007827 AY099509 NM_032898 AK314070	-5103	-	BC044233 NM_198565 TSC_hg19_v1_chr3_+_196366658 AY358322	-77557	+	TSC_hg19_v1_chr3_+_196466727 NM_002577	22506	+	TSC_hg19_v1_chr3_+_196466844 AK291339	22606	+	TSC_hg19_v1_chr3_+_196594754 AK302305 NM_152699 AK313764	150513	+	NM_001166304|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_017861|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##AK000529|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##BC022542|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##AK058155|CEP19|84984|centrosomal protein 19kDa##BC007827|CEP19|84984|centrosomal protein 19kDa##AY099509|CEP19|84984|centrosomal protein 19kDa##NM_032898|CEP19|84984|centrosomal protein 19kDa##AK314070|CEP19|84984|centrosomal protein 19kDa##BC044233|LRRC33|375387|leucine rich repeat containing 33##NM_198565|LRRC33|375387|leucine rich repeat containing 33##AY358322|LRRC33|375387|leucine rich repeat containing 33##NM_002577|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2##AK291339|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2##AK302305|SENP5|205564|SUMO1/sentrin specific peptidase 5##NM_152699|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK313764|SENP5|205564|SUMO1/sentrin specific peptidase 5	0.983116	0.0	denovo_WM_7:-40:0.735
chr8	81492181	81492299	reg1004433.p1	7.075	+	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-93756	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-408470	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	-499211	-	AK131274 NM_001033723	294775	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	532074	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	700533	+	AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)	0.982241	0.013003	denovo_WM_7:-19:0.982
chr17	76313081	76313223	reg1003936.p1	7.074	+	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-85689	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-102755	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	-102853	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	43005	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	61578	+	NM_173628	260323	-	BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17	0.992675	0.0	denovo_WM_7:33:0.772
chr5	149048929	149048995	reg1008621.p2	7.074	+	AK300559 AK316002 BC041325 NM_001001669	-87878	+	TSC_hg19_v1_chr5_-_148931006 NM_001025105 NM_001892	-117956	-	TSC_hg19_v1_chr5_-_148930950 AK294942	-117996	-	BC132971 BC132973 BC144251 NM_001172698 NM_133263 TSC_hg19_v1_chr5_+_149109839	60865	+	TSC_hg19_v1_chr5_+_149109872 AY188949 AY188950 AF468496 AF468497 AY188947 AY188948 AK095391	60914	+	AK123614 NM_001172699	102540	+	AK300559|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##AK316002|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##BC041325|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##NM_001001669|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##NM_001025105|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001892|CSNK1A1|1452|casein kinase 1, alpha 1##AK294942|CSNK1A1|1452|casein kinase 1, alpha 1##BC132971|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC132973|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC144251|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_001172698|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_133263|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188949|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188950|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468496|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468497|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188947|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188948|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AK095391|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AK123614|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_001172699|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta	2.377351	0.0	denovo_WM_7:0:0.700	denovo_WM_7:16:0.603	denovo_WM_7:31:0.640
chr7	84918635	84918797	reg1005238.p1	7.073	+	AK309116 TSC_hg19_v1_chr7_-_84816296	-102481	-	NM_152754	-167470	-	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	-1094394	-	TSC_hg19_v1_chr7_+_86273224 BC041407 NM_000840	1354509	+	AK291406 TSC_hg19_v1_chr7_+_86273870	1355155	+	AK294701 TSC_hg19_v1_chr7_+_86274004 BC022496	1355275	+	AK309116|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##NM_152754|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##BC041407|GRM3|2913|glutamate receptor, metabotropic 3##NM_000840|GRM3|2913|glutamate receptor, metabotropic 3##AK291406|GRM3|2913|glutamate receptor, metabotropic 3##AK294701|GRM3|2913|glutamate receptor, metabotropic 3##BC022496|GRM3|2913|glutamate receptor, metabotropic 3	0.996648	0.0	
chr10	88648803	88648972	reg1003610.p2	7.072	+	TSC_hg19_v1_chr10_+_88516526 NM_004329 BC028383 AK291764 Z22535	-132400	+	AK304760 TSC_hg19_v1_chr10_+_88428267 AK300692 AK297871 NM_001080116 AJ133766 BC010929 NM_001080114 NM_001080115 NM_001171611 NM_007078 AB014513 AF276807 AF276808 AF276809 AJ133767 AJ133768	-220532	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	-220701	+	TSC_hg19_v1_chr10_-_88717330 BC072456 AK304727 AK023527 AK293822 BC094744 BC064415 AK308401 NM_024756	68484	-	NM_003087 AK223367 AK311652 BC014098 AK312141 AF017256 AF411524 EU019993 AF010126 DQ892334 DQ892505 DQ895719 EU176715 AB464279 CR541788 CR541790	69483	+	NM_006829 TSC_hg19_v1_chr10_+_88728238 AK304688 AK312031 BC004471 D45370	79341	+	NM_004329|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC028383|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK291764|BMPR1A|657|bone morphogenetic protein receptor, type IA##Z22535|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK304760|LDB3|11155|LIM domain binding 3##AK300692|LDB3|11155|LIM domain binding 3##AK297871|LDB3|11155|LIM domain binding 3##NM_001080116|LDB3|11155|LIM domain binding 3##AJ133766|LDB3|11155|LIM domain binding 3##BC010929|LDB3|11155|LIM domain binding 3##NM_001080114|LDB3|11155|LIM domain binding 3##NM_001080115|LDB3|11155|LIM domain binding 3##NM_001171611|LDB3|11155|LIM domain binding 3##NM_007078|LDB3|11155|LIM domain binding 3##AB014513|LDB3|11155|LIM domain binding 3##AF276807|LDB3|11155|LIM domain binding 3##AF276808|LDB3|11155|LIM domain binding 3##AF276809|LDB3|11155|LIM domain binding 3##AJ133767|LDB3|11155|LIM domain binding 3##AJ133768|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3##BC072456|MMRN2|79812|multimerin 2##AK304727|MMRN2|79812|multimerin 2##AK023527|MMRN2|79812|multimerin 2##AK293822|MMRN2|79812|multimerin 2##BC094744|MMRN2|79812|multimerin 2##BC064415|MMRN2|79812|multimerin 2##AK308401|MMRN2|79812|multimerin 2##NM_024756|MMRN2|79812|multimerin 2##NM_003087|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK223367|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##BC014098|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK312141|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF017256|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF411524|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU019993|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF010126|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892334|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892505|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ895719|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU176715|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541788|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541790|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##NM_006829|C10orf116|10974|chromosome 10 open reading frame 116##AK312031|C10orf116|10974|chromosome 10 open reading frame 116##BC004471|C10orf116|10974|chromosome 10 open reading frame 116##D45370|C10orf116|10974|chromosome 10 open reading frame 116	0.0	0.0	
chr17	64393682	64393844	reg1005341.p2	7.072	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-94836	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-95013	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-168238	-	AK290171 TSC_hg19_v1_chr17_+_64831234	437472	+	BC101633 NM_145811 BC101607 AF361351 AF458898	479657	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	567126	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.990836	0.0	denovo_WM_7:-21:0.606	denovo_WM_7:-22:0.324
chr2	25433057	25433237	reg1000751.p1	7.071	+	NM_000939 NM_001035256	-41589	-	TSC_hg19_v1_chr2_+_25264954 NM_014971 AB023170	-168170	+	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	-238280	-	TSC_hg19_v1_chr2_-_25466801 BC018214	33661	-	TSC_hg19_v1_chr2_-_25467080 BC023612	33988	-	TSC_hg19_v1_chr2_-_25468920 AK025230	35831	-	NM_000939|POMC|5443|proopiomelanocortin##NM_001035256|POMC|5443|proopiomelanocortin##NM_014971|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AB023170|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC018214|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.0	0.0	
chr7	5597166	5597311	reg1005234.p1	7.071	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-27029	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-27992	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-28397	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	35200	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	35272	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	223984	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.998702	0.0	denovo_WM_7:-31:0.450	denovo_WM_7:-32:0.450
chr7	93790170	93790289	reg1005232.p1	7.071	+	BT009853 DQ894078 BC000899 TSC_hg19_v1_chr7_-_93633668 CR749267 AF007551 AK313984 BC012595 NM_005868	-156615	-	NM_004126 BC009709	-239173	+	BC029367 NM_021955	-254410	+	J03464 NM_000089 X02488	233643	+	TSC_hg19_v1_chr7_+_94024206 AK297786 AK223175 AK300194 Z74616 AK226074 BC042586 BC054498 Y00724 CU691094 AB384984	234042	+	TSC_hg19_v1_chr7_+_94139172 BC029543 NM_022900 BC063284 AF397424	348893	+	BT009853|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##DQ894078|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##BC000899|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##CR749267|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##AF007551|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##AK313984|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##BC012595|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##NM_005868|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##NM_004126|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC009709|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC029367|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##NM_021955|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##J03464|COL1A2|1278|collagen, type I, alpha 2##NM_000089|COL1A2|1278|collagen, type I, alpha 2##X02488|COL1A2|1278|collagen, type I, alpha 2##AK297786|COL1A2|1278|collagen, type I, alpha 2##AK223175|COL1A2|1278|collagen, type I, alpha 2##AK300194|COL1A2|1278|collagen, type I, alpha 2##Z74616|COL1A2|1278|collagen, type I, alpha 2##AK226074|COL1A2|1278|collagen, type I, alpha 2##BC042586|COL1A2|1278|collagen, type I, alpha 2##BC054498|COL1A2|1278|collagen, type I, alpha 2##Y00724|COL1A2|1278|collagen, type I, alpha 2##BC029543|CASD1|64921|CAS1 domain containing 1##NM_022900|CASD1|64921|CAS1 domain containing 1##BC063284|CASD1|64921|CAS1 domain containing 1##AF397424|CASD1|64921|CAS1 domain containing 1	0.959172	0.0	denovo_WM_7:74:0.837
chr12	122109750	122109884	reg1005301.p1	7.070	+	BC057760 NM_173855	-2258	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-45174	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-90903	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	40927	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	121757	-	TSC_hg19_v1_chr12_-_122240852 AK311480	131040	-	BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)	0.997639	0.0	denovo_WM_7:-22:0.817
chr12	8000456	8000582	reg1005348.p1	7.070	+	AK290896 TSC_hg19_v1_chr12_+_7942025 BC069807 BC098275 BC099704 EU446847 AY230262 AY578089	-58402	+	AB093576 AK022643 NM_024865 TSC_hg19_v1_chr12_+_7942016	-58514	+	AY151139 NM_001145465	-82708	+	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	24947	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	43249	-	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	88247	-	AK290896|NANOG|79923|Nanog homeobox##BC069807|NANOG|79923|Nanog homeobox##BC098275|NANOG|79923|Nanog homeobox##BC099704|NANOG|79923|Nanog homeobox##EU446847|NANOG|79923|Nanog homeobox##AY230262|NANOG|79923|Nanog homeobox##AY578089|NANOG|79923|Nanog homeobox##AB093576|NANOG|79923|Nanog homeobox##AK022643|NANOG|79923|Nanog homeobox##NM_024865|NANOG|79923|Nanog homeobox##AY151139|NANOGNB|360030|NANOG neighbor homeobox##NM_001145465|NANOGNB|360030|NANOG neighbor homeobox##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3	0.0	0.0	
chr19	10522995	10523157	reg1006499.p1	7.070	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-8820	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-8863	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	-8907	-	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	4427	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	8154	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	18351	+	NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.0	0.0	
chr12	16034681	16034861	reg1005115.p1	7.069	+	TSC_hg19_v1_chr12_-_15942350 AK304860 NM_004447	-92342	-	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	-92539	-	TSC_hg19_v1_chr12_-_15865848 AK292931	-168907	-	NM_007178 TSC_hg19_v1_chr12_+_16035321 AK074607 AK315891 AK297942 BC062306 AF161496 AB024327 AL136691 AK312295	559	+	AJ010025 BC000162 TSC_hg19_v1_chr12_+_16035508 U56430 AY049776 DQ890951 DQ894113 AB385074 CU674068 BT020044 BT020045	797	+	BC041328 NM_015954 TSC_hg19_v1_chr12_+_16064223	29395	+	AK304860|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_004447|EPS8|2059|epidermal growth factor receptor pathway substrate 8##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_007178|STRAP|11171|serine/threonine kinase receptor associated protein##AK315891|STRAP|11171|serine/threonine kinase receptor associated protein##AK297942|STRAP|11171|serine/threonine kinase receptor associated protein##BC062306|STRAP|11171|serine/threonine kinase receptor associated protein##AF161496|STRAP|11171|serine/threonine kinase receptor associated protein##AB024327|STRAP|11171|serine/threonine kinase receptor associated protein##AL136691|STRAP|11171|serine/threonine kinase receptor associated protein##AK312295|STRAP|11171|serine/threonine kinase receptor associated protein##AJ010025|STRAP|11171|serine/threonine kinase receptor associated protein##BC000162|STRAP|11171|serine/threonine kinase receptor associated protein##AY049776|STRAP|11171|serine/threonine kinase receptor associated protein##DQ890951|STRAP|11171|serine/threonine kinase receptor associated protein##DQ894113|STRAP|11171|serine/threonine kinase receptor associated protein##BT020044|STRAP|11171|serine/threonine kinase receptor associated protein##BT020045|STRAP|11171|serine/threonine kinase receptor associated protein##BC041328|DERA|51071|deoxyribose-phosphate aldolase (putative)##NM_015954|DERA|51071|deoxyribose-phosphate aldolase (putative)	0.999822	0.0	denovo_WM_7:-25:0.457	denovo_WM_7:-26:0.457
chr4	185455816	185455944	reg1006029.p1	7.068	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	-60199	-	BC035035 AY358676 AK057370 NM_153343	-316815	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-627969	+	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	114721	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	114953	+	TSC_hg19_v1_chr4_+_185570923 BC064600 AK307317	115049	+	X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111##BC064600|CCDC111|201973|coiled-coil domain containing 111##AK307317|CCDC111|201973|coiled-coil domain containing 111	0.0	0.0	
chr6	26358474	26358654	reg1000273.p1	7.068	+	BC120939 CR542169 CR542187 NM_003543 DQ892790 DQ896037 BC010926 TSC_hg19_v1_chr6_-_26285763	-72819	-	BC101653 BC101655 EU446969 NM_003525	-85391	+	TSC_hg19_v1_chr6_-_26271642 AB591037 EU446974 NM_003534 BC079835	-86947	-	NM_001197247 NM_001197249 NM_007047 TSC_hg19_v1_chr6_+_26365425 AK312847 AK290880 U90546 AK303600 NM_001197248 BC002832 BC020214 AK299417	6888	+	AF257505 NM_001197246	9841	+	NM_001197238 NM_001197239 NM_001197240 NM_006995 NM_181531 AK304744 AK289883 AK293526 AK298570 U90550 BC017497 NM_001197237 BC014021	24828	+	BC120939|HIST1H4H|8365|histone cluster 1, H4h##CR542169|HIST1H4H|8365|histone cluster 1, H4h##CR542187|HIST1H4H|8365|histone cluster 1, H4h##NM_003543|HIST1H4H|8365|histone cluster 1, H4h##DQ892790|HIST1H4H|8365|histone cluster 1, H4h##DQ896037|HIST1H4H|8365|histone cluster 1, H4h##BC010926|HIST1H4H|8365|histone cluster 1, H4h##BC101653|HIST1H2BI|8346|histone cluster 1, H2bi##BC101655|HIST1H2BI|8346|histone cluster 1, H2bi##EU446969|HIST1H2BI|8346|histone cluster 1, H2bi##NM_003525|HIST1H2BI|8346|histone cluster 1, H2bi##EU446974|HIST1H3G|8355|histone cluster 1, H3g##NM_003534|HIST1H3G|8355|histone cluster 1, H3g##BC079835|HIST1H3G|8355|histone cluster 1, H3g##NM_001197247|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197249|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_007047|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK312847|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK290880|BTN3A2|11118|butyrophilin, subfamily 3, member A2##U90546|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK303600|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197248|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC002832|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC020214|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK299417|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AF257505|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197246|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197238|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197239|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197240|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_006995|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_181531|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK304744|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK289883|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK293526|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK298570|BTN2A2|10385|butyrophilin, subfamily 2, member A2##U90550|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC017497|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197237|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC014021|BTN2A2|10385|butyrophilin, subfamily 2, member A2	0.0	0.0	
chr4	38890944	38891070	reg1004067.p1	7.067	+	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-21616	+	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	-32579	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	-84588	-	BC030803 BC060512 AK026888 NM_024943	143003	-	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	155431	+	AK289785 NM_015990 NM_199039	172844	+	NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)	0.990354	0.0	denovo_WM_7:13:0.927
chr15	75261899	75262003	reg1004142.p2	7.066	+	AK000381 NM_017793	-12177	-	CU675593 AY034074 BC002497 BC007270 TSC_hg19_v1_chr15_-_75249114	-12927	-	TSC_hg19_v1_chr15_-_75230386 AK026623 BC024240 NM_004255	-31511	-	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	25956	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	53977	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	54030	+	AK000381|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_017793|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AY034074|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC002497|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC007270|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AK026623|COX5A|9377|cytochrome c oxidase subunit Va##BC024240|COX5A|9377|cytochrome c oxidase subunit Va##NM_004255|COX5A|9377|cytochrome c oxidase subunit Va##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase	1.99802	0.0	denovo_WM_7:22:0.366	denovo_WM_7:23:0.274	denovo_WM_7:39:0.291	denovo_WM_7:40:0.382
chr2	61662327	61662482	reg1004930.p1	7.063	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-257615	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-257762	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-257821	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	35453	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	35539	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	102354	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	0.995032	0.0	
chr3	171209253	171209433	reg1005833.p1	7.062	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-31272	-	NM_000340	-464576	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-464810	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	318912	-	NM_001164436 AK026825	351805	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	548072	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	1.209972	0.0	denovo_WM_7:-1:0.736
chr9	127027068	127027219	reg1004410.p1	7.061	+	TSC_hg19_v1_chr9_+_127020588 AL832574	-6553	+	TSC_hg19_v1_chr9_+_127020519 NM_001166168 AK313071	-6620	+	TSC_hg19_v1_chr9_+_127020255 AB026289	-6879	+	TSC_hg19_v1_chr9_+_127054267 NM_001166170 NM_001166171	27116	+	TSC_hg19_v1_chr9_+_127054570 AK294614 NM_001166169	27489	+	TSC_hg19_v1_chr9_+_127119114 BC042968	92026	+	NM_001166168|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK313071|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166170|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166171|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK294614|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166169|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.994231	0.0	
chr11	19263298	19263461	reg1005978.p2	7.060	+	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	-178	-	TSC_hg19_v1_chr11_-_19262479 AK055206 BC108700 BC126400 BC126402 NM_024680	-904	-	U20324 U72899 U49837 BC057221 NM_001127656 TSC_hg19_v1_chr11_-_19223531 AK313289 NM_003476 AF121260	-39821	-	AB063115 NM_001111018 AJ488205	108936	+	TSC_hg19_v1_chr11_+_19734821 AB037840 BC150290 NM_001244963 NM_145117 NM_182964 AB063116	471487	+	TSC_hg19_v1_chr11_+_20044396 AK298346 AJ488208	781009	+	AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8##AK055206|E2F8|79733|E2F transcription factor 8##BC108700|E2F8|79733|E2F transcription factor 8##BC126400|E2F8|79733|E2F transcription factor 8##BC126402|E2F8|79733|E2F transcription factor 8##NM_024680|E2F8|79733|E2F transcription factor 8##U20324|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U72899|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U49837|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##BC057221|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_001127656|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK313289|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_003476|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AF121260|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AB063115|NAV2|89797|neuron navigator 2##NM_001111018|NAV2|89797|neuron navigator 2##AJ488205|NAV2|89797|neuron navigator 2##AB037840|NAV2|89797|neuron navigator 2##BC150290|NAV2|89797|neuron navigator 2##NM_001244963|NAV2|89797|neuron navigator 2##NM_145117|NAV2|89797|neuron navigator 2##NM_182964|NAV2|89797|neuron navigator 2##AB063116|NAV2|89797|neuron navigator 2##AK298346|NAV2|89797|neuron navigator 2##AJ488208|NAV2|89797|neuron navigator 2	0.991911	0.0	denovo_WM_7:0:0.836
chr15	55022197	55022334	reg1005166.p1	7.059	+	NM_001080534	-717165	+	AK096055 BX537884 NM_182758	-970418	-	AB463985 BC140830 NM_004498 U96173 TSC_hg19_v1_chr15_-_53082301	-1940071	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	466827	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	466914	-	AF125393 NM_183234 U57094 U38654 NM_004580	540272	-	NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AK096055|WDR72|256764|WD repeat domain 72##BX537884|WDR72|256764|WD repeat domain 72##NM_182758|WDR72|256764|WD repeat domain 72##BC140830|ONECUT1|3175|one cut homeobox 1##NM_004498|ONECUT1|3175|one cut homeobox 1##U96173|ONECUT1|3175|one cut homeobox 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family	1.965431	0.0	denovo_WM_7:-3:0.970	denovo_WM_7:-18:0.903
chr17	42176761	42176865	reg1005052.p2	7.059	+	NM_138387 TSC_hg19_v1_chr17_+_42148102 BC021574 BC062596 AK091417 AX746969 BC002494	-28614	+	BC066298 NM_152344	-31827	-	TSC_hg19_v1_chr17_-_42144008 AK055218 BC044587 BC105288	-32797	-	TSC_hg19_v1_chr17_-_42201007 AK294760 AB011172	24169	-	TSC_hg19_v1_chr17_-_42201010 NM_001015053 NM_005474	24203	-	TSC_hg19_v1_chr17_+_42219297 NM_001171251 NM_024032 AK291924	42453	+	NM_138387|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC021574|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC062596|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC002494|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC066298|LSM12|124801|LSM12 homolog (S. cerevisiae)##NM_152344|LSM12|124801|LSM12 homolog (S. cerevisiae)##AK055218|LSM12|124801|LSM12 homolog (S. cerevisiae)##BC044587|LSM12|124801|LSM12 homolog (S. cerevisiae)##BC105288|LSM12|124801|LSM12 homolog (S. cerevisiae)##AK294760|HDAC5|10014|histone deacetylase 5##AB011172|HDAC5|10014|histone deacetylase 5##NM_001015053|HDAC5|10014|histone deacetylase 5##NM_005474|HDAC5|10014|histone deacetylase 5##NM_001171251|C17orf53|78995|chromosome 17 open reading frame 53##NM_024032|C17orf53|78995|chromosome 17 open reading frame 53##AK291924|C17orf53|78995|chromosome 17 open reading frame 53	0.990868	0.0	denovo_WM_7:37:0.544	denovo_WM_7:40:0.363
chr1	6265448	6265573	reg1005945.p1	7.058	+	TSC_hg19_v1_chr1_-_6259655 CR456873 BC046108 BC058887 AK097075 AK311749 D17652 BC066314 BC035566 NM_000983	-5857	-	AK127046 AB527126 AF425231 NM_015557 TSC_hg19_v1_chr1_-_6240331	-25303	-	AK315858 NM_001199863	-159337	+	BC119780 TSC_hg19_v1_chr1_+_6266175 NM_207396	654	+	AK056658 TSC_hg19_v1_chr1_+_6268938 AK294223 BC128237	3487	+	TSC_hg19_v1_chr1_-_6295985 CR541671 CR541711 AB590586	30467	-	CR456873|RPL22|6146|ribosomal protein L22##BC058887|RPL22|6146|ribosomal protein L22##AK097075|RPL22|6146|ribosomal protein L22##AK311749|RPL22|6146|ribosomal protein L22##D17652|RPL22|6146|ribosomal protein L22##BC066314|RPL22|6146|ribosomal protein L22##BC035566|RPL22|6146|ribosomal protein L22##NM_000983|RPL22|6146|ribosomal protein L22##AK127046|CHD5|26038|chromodomain helicase DNA binding protein 5##AF425231|CHD5|26038|chromodomain helicase DNA binding protein 5##NM_015557|CHD5|26038|chromodomain helicase DNA binding protein 5##AK315858|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##NM_001199863|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2##BC119780|RNF207|388591|ring finger protein 207##NM_207396|RNF207|388591|ring finger protein 207##AK056658|RNF207|388591|ring finger protein 207##AK294223|RNF207|388591|ring finger protein 207##BC128237|RNF207|388591|ring finger protein 207##CR541671|ICMT|23463|isoprenylcysteine carboxyl methyltransferase##CR541711|ICMT|23463|isoprenylcysteine carboxyl methyltransferase	0.987442	0.258241	denovo_WM_7:34:0.927	CTCF.p2:-69:0.258
chr1	93002533	93002674	reg1005031.p1	7.058	+	U67369 NM_005263 TSC_hg19_v1_chr1_-_92952458	-50153	-	BC032751 TSC_hg19_v1_chr1_-_92951630 NM_001127216	-50988	-	TSC_hg19_v1_chr1_-_92949508 AK123009	-53071	-	AB449875 AB587441 AF008915 AF042345 NM_005665	255352	-	TSC_hg19_v1_chr1_+_93297596 NM_000969 AK092963 AK095815 AK314720 AB055762	294961	+	TSC_hg19_v1_chr1_+_93297612 BC109370	295002	+	U67369|GFI1|2672|growth factor independent 1 transcription repressor##NM_005263|GFI1|2672|growth factor independent 1 transcription repressor##BC032751|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127216|GFI1|2672|growth factor independent 1 transcription repressor##AK123009|GFI1|2672|growth factor independent 1 transcription repressor##AB449875|EVI5|7813|ecotropic viral integration site 5##AF008915|EVI5|7813|ecotropic viral integration site 5##NM_005665|EVI5|7813|ecotropic viral integration site 5##NM_000969|RPL5|6125|ribosomal protein L5##AK092963|RPL5|6125|ribosomal protein L5##AK095815|RPL5|6125|ribosomal protein L5##AK314720|RPL5|6125|ribosomal protein L5##AB055762|RPL5|6125|ribosomal protein L5##BC109370|RPL5|6125|ribosomal protein L5	0.0	0.0	
chr5	131862561	131862664	reg1004770.p2	7.057	+	X14454 BC009483 AK298770 AK314025 NM_002198 TSC_hg19_v1_chr5_-_131826466	-36131	-	TSC_hg19_v1_chr5_+_131746621 AK096941 AK309191 AK128882	-115984	+	TSC_hg19_v1_chr5_+_131705407 NM_003060 AF057164 BC012325 AB015050 AK313230 CU680286 DQ893671 DQ895818 AB291606	-157104	+	AB591005 BC066279 BC066280 BC066281 BC066282 BC069137 NM_000879 X04688 X12705	16580	-	TSC_hg19_v1_chr5_+_131892670 NM_005732 BC140005 U63139 AK290597 BC108282 AF057299 AF057300 BC062603 BC073850 BC136436	30028	+	BC096138 BC096139 BC096140 BC096141 NM_002188 X69079 AB463799 L06801 AF043334	131278	+	X14454|IRF1|3659|interferon regulatory factor 1##BC009483|IRF1|3659|interferon regulatory factor 1##AK298770|IRF1|3659|interferon regulatory factor 1##AK314025|IRF1|3659|interferon regulatory factor 1##NM_002198|IRF1|3659|interferon regulatory factor 1##AK096941|C5orf56|441108|chromosome 5 open reading frame 56##AK309191|C5orf56|441108|chromosome 5 open reading frame 56##AK128882|C5orf56|441108|chromosome 5 open reading frame 56##NM_003060|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AF057164|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC012325|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB015050|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK313230|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ893671|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ895818|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB291606|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC066279|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066280|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066281|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066282|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC069137|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_000879|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X04688|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X12705|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_005732|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC140005|RAD50|10111|RAD50 homolog (S. cerevisiae)##U63139|RAD50|10111|RAD50 homolog (S. cerevisiae)##AK290597|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC108282|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057299|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057300|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC062603|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC073850|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC136436|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC096138|IL13|3596|interleukin 13##BC096139|IL13|3596|interleukin 13##BC096140|IL13|3596|interleukin 13##BC096141|IL13|3596|interleukin 13##NM_002188|IL13|3596|interleukin 13##X69079|IL13|3596|interleukin 13##L06801|IL13|3596|interleukin 13##AF043334|IL13|3596|interleukin 13	0.0	0.970703	CTCF.p2:20:0.971
chr6_mann_hap4	2083652	2083800	reg1005717.p2	7.056	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.981751	0.0	denovo_WM_7:20:0.337	denovo_WM_7:21:0.355	denovo_WM_7:22:0.266
chr12	12870028	12870160	reg1002257.p2	7.055	+	AK096388 NM_006143	-20974	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-105211	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-105299	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	32	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	8762	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	68483	+	AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1	0.0	0.0	
chrX	46488082	46488234	reg1005655.p2	7.055	+	NM_019886 BC045537 BC023971 AB040711 AB037187 GQ129386 GQ129387	-54880	+	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	-83214	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	-83302	-	AF298591 NM_032591 TSC_hg19_v1_chrX_-_46618577	130371	-	TSC_hg19_v1_chrX_-_46618608 BC094742	130472	-	NM_006915 AJ007590 TSC_hg19_v1_chrX_+_46696391 BC027851	208219	+	NM_019886|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC045537|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC023971|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB040711|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB037187|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129386|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129387|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##AF298591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_032591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##BC094742|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_006915|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AJ007590|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC027851|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)	0.0	0.0	
chr14	79224738	79224918	reg1005979.p2	7.052	+	AB018286 BC152457 NM_004796	-354736	+	TSC_hg19_v1_chr14_+_78266441 NM_001142545 NM_020421 AK299430 BX248292 BC017459 BC058906 AK096919	-958378	+	AB464230 BT020060 BT020061 CR457433 BC051806 BC065286 TSC_hg19_v1_chr14_-_78227500 AK302246 AX775981 U51432 BC105585 BC108903 AF045184 AK292274 NM_012245 AK293619 AK316087	-997319	-	NM_001105250 NM_138970 AK056530 BC059368 BC068469	520876	+	BC136514 AB041843 BC074882 BC063118 NM_001007023 NM_001242502 NM_001242503 U53506 AF093774 NM_013989	1453076	-	AK292210 NM_000793	1472568	-	AB018286|NRXN3|9369|neurexin 3##BC152457|NRXN3|9369|neurexin 3##NM_004796|NRXN3|9369|neurexin 3##NM_001142545|ADCK1|57143|aarF domain containing kinase 1##NM_020421|ADCK1|57143|aarF domain containing kinase 1##AK299430|ADCK1|57143|aarF domain containing kinase 1##BX248292|ADCK1|57143|aarF domain containing kinase 1##BC017459|ADCK1|57143|aarF domain containing kinase 1##BC058906|ADCK1|57143|aarF domain containing kinase 1##AK096919|ADCK1|57143|aarF domain containing kinase 1##BT020060|SNW1|22938|SNW domain containing 1##BT020061|SNW1|22938|SNW domain containing 1##CR457433|SNW1|22938|SNW domain containing 1##BC065286|SNW1|22938|SNW domain containing 1##AK302246|SNW1|22938|SNW domain containing 1##AX775981|SNW1|22938|SNW domain containing 1##U51432|SNW1|22938|SNW domain containing 1##BC105585|SNW1|22938|SNW domain containing 1##BC108903|SNW1|22938|SNW domain containing 1##AF045184|SNW1|22938|SNW domain containing 1##AK292274|SNW1|22938|SNW domain containing 1##NM_012245|SNW1|22938|SNW domain containing 1##AK293619|SNW1|22938|SNW domain containing 1##AK316087|SNW1|22938|SNW domain containing 1##NM_001105250|NRXN3|9369|neurexin 3##NM_138970|NRXN3|9369|neurexin 3##AK056530|NRXN3|9369|neurexin 3##BC059368|NRXN3|9369|neurexin 3##BC068469|NRXN3|9369|neurexin 3##BC136514|DIO2|1734|deiodinase, iodothyronine, type II##AB041843|DIO2|1734|deiodinase, iodothyronine, type II##BC074882|DIO2|1734|deiodinase, iodothyronine, type II##BC063118|DIO2|1734|deiodinase, iodothyronine, type II##NM_001007023|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242502|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242503|DIO2|1734|deiodinase, iodothyronine, type II##U53506|DIO2|1734|deiodinase, iodothyronine, type II##AF093774|DIO2|1734|deiodinase, iodothyronine, type II##NM_013989|DIO2|1734|deiodinase, iodothyronine, type II##AK292210|DIO2|1734|deiodinase, iodothyronine, type II##NM_000793|DIO2|1734|deiodinase, iodothyronine, type II	0.0	0.0	
chr13	47231415	47231595	reg1004060.p2	7.051	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-103998	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-104085	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-104182	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	139810	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	239562	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1343946	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.774137	0.0	denovo_WM_7:90:0.413
chr1	220158387	220158562	reg1005134.p1	7.049	+	TSC_hg19_v1_chr1_-_220101974 AY212919 AK090806 AX746624 NM_018713	-56509	-	AB464233 TSC_hg19_v1_chr1_-_220101784	-56683	-	BC036078 TSC_hg19_v1_chr1_-_220101540	-56945	-	TSC_hg19_v1_chr1_-_220219802 BC136465 BC105983 BC015494 BC034797	61320	-	TSC_hg19_v1_chr1_-_220219848 BC058921 CR933648	61368	-	TSC_hg19_v1_chr1_-_220219873 AK296755 BC067841	61389	-	AY212919|SLC30A10|55532|solute carrier family 30, member 10##AK090806|SLC30A10|55532|solute carrier family 30, member 10##NM_018713|SLC30A10|55532|solute carrier family 30, member 10##BC036078|SLC30A10|55532|solute carrier family 30, member 10##BC136465|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC105983|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC015494|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC034797|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC058921|EPRS|2058|glutamyl-prolyl-tRNA synthetase##CR933648|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AK296755|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC067841|EPRS|2058|glutamyl-prolyl-tRNA synthetase	1.042116	0.0	denovo_WM_7:-74:0.404	denovo_WM_7:-75:0.418
chr3	47554394	47554550	reg1005531.p1	7.049	+	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	-37040	-	TSC_hg19_v1_chr3_-_47517349 AK300311	-37135	-	AB040904 NM_015466 TSC_hg19_v1_chr3_+_47422510 AK055157 AK299906 AK295888 AK289502 AB025194 AF290614 AK295877 BC089042	-131940	+	DQ787088 BC000623 BC014204 TSC_hg19_v1_chr3_-_47555203 AK225721 AK000218 AK298202 NM_001031703	670	-	AB463496 AF059274 TSC_hg19_v1_chr3_-_47620336 NM_001206943 NM_001206944 NM_006574	65817	-	AK294621 NM_001206942 NM_001206945	67257	-	AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone##AK300311|SCAP|22937|SREBF chaperone##AB040904|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_015466|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK055157|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK299906|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295888|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK289502|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AB025194|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AF290614|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295877|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##BC089042|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##DQ787088|C3orf75|54859|chromosome 3 open reading frame 75##BC000623|C3orf75|54859|chromosome 3 open reading frame 75##BC014204|C3orf75|54859|chromosome 3 open reading frame 75##AK225721|C3orf75|54859|chromosome 3 open reading frame 75##AK000218|C3orf75|54859|chromosome 3 open reading frame 75##AK298202|C3orf75|54859|chromosome 3 open reading frame 75##NM_001031703|C3orf75|54859|chromosome 3 open reading frame 75##AF059274|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206943|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206944|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_006574|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##AK294621|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206942|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206945|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)	0.998858	0.0	denovo_WM_7:17:0.314	denovo_WM_7:18:0.314	denovo_WM_7:19:0.314
chr8	141477421	141477573	reg1004044.p1	7.049	+	AK128755 NM_031466	-8820	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	-9639	-	AB067469 TSC_hg19_v1_chr8_-_141467841	-9672	-	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	43895	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	44066	+	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	168127	-	AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2	0.0	0.766245	CTCF.p2:-28:0.766
chr14	65565449	65565576	reg1005607.p2	7.048	+	BC035148 BC052775 TSC_hg19_v1_chr14_+_65453967	-111546	+	TSC_hg19_v1_chr14_+_65453605 BC013574 AK225917 L00635 BC020232 BX248269 DQ892128 DQ895321	-111875	+	AK315714 NM_002028 TSC_hg19_v1_chr14_+_65453591	-111993	+	AB463901 AY353088 CR542191 CU693010 X60287 M64240 AK292630 AK292189 BC003525 BC004516 AK290130 TSC_hg19_v1_chr14_-_65569205 BC036092 BC027924 BC025685	3620	-	TSC_hg19_v1_chr14_-_65569238 BC013669 NM_002382 NM_145112 NM_145113 NM_145114 NM_145116 NM_197957 AK290929 AL833643	3726	-	AJ536056 NM_004480 NM_178155 NM_178156	311797	+	BC013574|FNTB|2342|farnesyltransferase, CAAX box, beta##AK225917|FNTB|2342|farnesyltransferase, CAAX box, beta##L00635|FNTB|2342|farnesyltransferase, CAAX box, beta##BC020232|FNTB|2342|farnesyltransferase, CAAX box, beta##BX248269|FNTB|2342|farnesyltransferase, CAAX box, beta##DQ892128|FNTB|2342|farnesyltransferase, CAAX box, beta##DQ895321|FNTB|2342|farnesyltransferase, CAAX box, beta##AK315714|FNTB|2342|farnesyltransferase, CAAX box, beta##NM_002028|FNTB|2342|farnesyltransferase, CAAX box, beta##AY353088|MAX|4149|MYC associated factor X##CR542191|MAX|4149|MYC associated factor X##X60287|MAX|4149|MYC associated factor X##M64240|MAX|4149|MYC associated factor X##AK292630|MAX|4149|MYC associated factor X##AK292189|MAX|4149|MYC associated factor X##BC003525|MAX|4149|MYC associated factor X##BC004516|MAX|4149|MYC associated factor X##AK290130|MAX|4149|MYC associated factor X##BC036092|MAX|4149|MYC associated factor X##BC027924|MAX|4149|MYC associated factor X##BC025685|MAX|4149|MYC associated factor X##BC013669|MAX|4149|MYC associated factor X##NM_002382|MAX|4149|MYC associated factor X##NM_145112|MAX|4149|MYC associated factor X##NM_145113|MAX|4149|MYC associated factor X##NM_145114|MAX|4149|MYC associated factor X##NM_145116|MAX|4149|MYC associated factor X##NM_197957|MAX|4149|MYC associated factor X##AK290929|MAX|4149|MYC associated factor X##AL833643|MAX|4149|MYC associated factor X##AJ536056|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_004480|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178155|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178156|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)	0.0	0.0	
chr6	42419831	42419920	reg1003587.p2	7.048	+	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	-52	-	TSC_hg19_v1_chr6_-_42185603 NM_018141	-234258	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-234275	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	111875	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	111902	+	TSC_hg19_v1_chr6_+_42531956 AY061884 CU687884	112129	+	AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##AY061884|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.998992	0.0	denovo_WM_7:6:0.518	denovo_WM_7:7:0.462
chr17	53591507	53591626	reg1006274.p1	7.047	+	CR541893 DQ892362 DQ895569 TSC_hg19_v1_chr17_-_53499293 X85750 AK312760 AK303810 BC026324 AY424289 NM_012329	-92311	-	TSC_hg19_v1_chr17_+_53344967 AK295726 AK074289	-246580	+	AK290043 TSC_hg19_v1_chr17_+_53343204	-248379	+	BC010128 AK001832 NM_018286	208583	-	AK095175 NM_001099640	217896	-	NM_021213 TSC_hg19_v1_chr17_+_53828339 AF087857 AF151638	236809	+	CR541893|MMD|23531|monocyte to macrophage differentiation-associated##DQ892362|MMD|23531|monocyte to macrophage differentiation-associated##DQ895569|MMD|23531|monocyte to macrophage differentiation-associated##X85750|MMD|23531|monocyte to macrophage differentiation-associated##AK312760|MMD|23531|monocyte to macrophage differentiation-associated##AK303810|MMD|23531|monocyte to macrophage differentiation-associated##BC026324|MMD|23531|monocyte to macrophage differentiation-associated##AY424289|MMD|23531|monocyte to macrophage differentiation-associated##NM_012329|MMD|23531|monocyte to macrophage differentiation-associated##AK295726|HLF|3131|hepatic leukemia factor##AK074289|HLF|3131|hepatic leukemia factor##AK290043|HLF|3131|hepatic leukemia factor##BC010128|TMEM100|55273|transmembrane protein 100##AK001832|TMEM100|55273|transmembrane protein 100##NM_018286|TMEM100|55273|transmembrane protein 100##AK095175|TMEM100|55273|transmembrane protein 100##NM_001099640|TMEM100|55273|transmembrane protein 100##NM_021213|PCTP|58488|phosphatidylcholine transfer protein##AF087857|PCTP|58488|phosphatidylcholine transfer protein##AF151638|PCTP|58488|phosphatidylcholine transfer protein	0.471927	0.999636	CTCF.p2:-6:1.000	denovo_WM_7:23:0.446
chr10	31871031	31871149	reg1004696.p1	7.046	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-261001	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-262957	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-263133	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	346634	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	346695	-	TSC_hg19_v1_chr10_-_32344938 AB462413	473842	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.054862	0.0	
chr12	109106588	109106768	reg1001402.p2	7.045	+	TSC_hg19_v1_chr12_-_109027671 AK127638 AK298738 AK098315 NM_003006	-79016	-	TSC_hg19_v1_chr12_-_109027639 AK300057 AK290395 BC029782	-79045	-	AK225644 U02297 AK295238 TSC_hg19_v1_chr12_-_109027584	-79104	-	TSC_hg19_v1_chr12_-_109125268 AL162070 AK297463	18585	-	TSC_hg19_v1_chr12_-_109125284 BC002342 AB209909	18602	-	TSC_hg19_v1_chr12_-_109125295 AK023205 AK223073 AK304839 AK311315 AK316065 AB030656 NM_014325	18614	-	AK127638|SELPLG|6404|selectin P ligand##AK098315|SELPLG|6404|selectin P ligand##NM_003006|SELPLG|6404|selectin P ligand##AK290395|SELPLG|6404|selectin P ligand##BC029782|SELPLG|6404|selectin P ligand##AK225644|SELPLG|6404|selectin P ligand##U02297|SELPLG|6404|selectin P ligand##AK295238|SELPLG|6404|selectin P ligand##AL162070|CORO1C|23603|coronin, actin binding protein, 1C##AK297463|CORO1C|23603|coronin, actin binding protein, 1C##BC002342|CORO1C|23603|coronin, actin binding protein, 1C##AB209909|CORO1C|23603|coronin, actin binding protein, 1C##AK023205|CORO1C|23603|coronin, actin binding protein, 1C##AK223073|CORO1C|23603|coronin, actin binding protein, 1C##AK304839|CORO1C|23603|coronin, actin binding protein, 1C##AK311315|CORO1C|23603|coronin, actin binding protein, 1C##AK316065|CORO1C|23603|coronin, actin binding protein, 1C##AB030656|CORO1C|23603|coronin, actin binding protein, 1C##NM_014325|CORO1C|23603|coronin, actin binding protein, 1C	0.996866	0.0	
chr17	29649539	29649681	reg1002593.p4	7.045	+	TSC_hg19_v1_chr17_-_29648631 BC035572 AK295311 AK312348 NM_001003927 NM_014210	-912	-	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	-8499	-	TSC_hg19_v1_chr17_-_29641092 BC005926	-8521	-	AY169244 NM_032932 TSC_hg19_v1_chr17_+_29718692	69057	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	69254	+	TSC_hg19_v1_chr17_+_29815032 AK097424	165451	+	BC035572|EVI2A|2123|ecotropic viral integration site 2A##AK295311|EVI2A|2123|ecotropic viral integration site 2A##AK312348|EVI2A|2123|ecotropic viral integration site 2A##NM_001003927|EVI2A|2123|ecotropic viral integration site 2A##NM_014210|EVI2A|2123|ecotropic viral integration site 2A##AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AY169244|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##NM_032932|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)	2.001403	0.0	denovo_WM_7:-62:0.265	denovo_WM_7:-63:0.221	denovo_WM_7:107:0.714
chr17	41798326	41798444	reg1003841.p2	7.045	+	NM_001040002 AK291139	-59110	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	-59470	-	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-174659	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	37758	-	AK226170 TSC_hg19_v1_chr17_-_41856314 AB451424 BT019522 CU678116 DQ893122 DQ896399 BC035701 AK129822 L05147 BC002682 NM_004090	57899	-	BC054872 BC070324 NM_001136483 BC146971 AK125817	59429	+	NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin##AK226170|DUSP3|1845|dual specificity phosphatase 3##AB451424|DUSP3|1845|dual specificity phosphatase 3##BT019522|DUSP3|1845|dual specificity phosphatase 3##DQ893122|DUSP3|1845|dual specificity phosphatase 3##DQ896399|DUSP3|1845|dual specificity phosphatase 3##BC035701|DUSP3|1845|dual specificity phosphatase 3##AK129822|DUSP3|1845|dual specificity phosphatase 3##L05147|DUSP3|1845|dual specificity phosphatase 3##BC002682|DUSP3|1845|dual specificity phosphatase 3##NM_004090|DUSP3|1845|dual specificity phosphatase 3##BC054872|C17orf105|284067|chromosome 17 open reading frame 105##BC070324|C17orf105|284067|chromosome 17 open reading frame 105##NM_001136483|C17orf105|284067|chromosome 17 open reading frame 105##BC146971|C17orf105|284067|chromosome 17 open reading frame 105##AK125817|C17orf105|284067|chromosome 17 open reading frame 105	1.998395	0.0	denovo_WM_7:37:0.310	denovo_WM_7:38:0.248	denovo_WM_7:55:0.259	denovo_WM_7:56:0.321
chr5	158324575	158324725	reg1004944.p1	7.045	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1038560	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1140270	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1153910	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	201807	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	202092	-	AK304228 NM_001199382	309998	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.411406	0.0	denovo_WM_7:-55:0.208	denovo_WM_7:-56:0.203
chr10	74080161	74080268	reg1004490.p1	7.044	+	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	-46390	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-104103	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-104426	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	34464	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	34712	-	AK298347 AK296086 TSC_hg19_v1_chr10_-_74283734 NM_001195519	203505	-	NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK298347|MICU1|10367|mitochondrial calcium uptake 1##AK296086|MICU1|10367|mitochondrial calcium uptake 1##NM_001195519|MICU1|10367|mitochondrial calcium uptake 1	0.995666	0.0	denovo_WM_7:-12:0.456	denovo_WM_7:-13:0.456
chr16	69601299	69601426	reg1004889.p1	7.044	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	-1181	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	-1446	+	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	-1494	+	AF134870 TSC_hg19_v1_chr16_+_69681070	79652	+	U80231 AK000312 TSC_hg19_v1_chr16_+_69726827	125427	+	TSC_hg19_v1_chr16_-_69760362 AK316246	158998	-	AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF134870|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##U80231|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK000312|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK316246|NQO1|1728|NAD(P)H dehydrogenase, quinone 1	0.0	0.06053	
chr3	171068297	171068462	reg1004815.p1	7.044	+	NM_000340	-323612	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-323846	-	AB528020 J03810 TSC_hg19_v1_chr3_-_170744510 AK313622 BC060041 AK290846 AK292741	-323889	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	109692	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	459876	-	NM_001164436 AK026825	492769	+	NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##J03810|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK313622|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##BC060041|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK290846|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK292741|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212	0.997548	0.0	
chr11	129864350	129864454	reg1004003.p1	7.043	+	AB033057 AB385439 BC117415 BC143612 BC143613 AF503171 AF275817 NM_199438 NM_199439	-46994	-	TSC_hg19_v1_chr11_-_129765482 NM_001143835	-98921	-	TSC_hg19_v1_chr11_-_129765469 AK299794	-98932	-	AK310354 TSC_hg19_v1_chr11_-_129872691	8287	-	TSC_hg19_v1_chr11_-_129872731 BC112934 AL833172 BX648944 NM_020228 NM_199437	8332	-	TSC_hg19_v1_chr11_+_129939755 NM_001142276 NM_001142277 NM_001142278 NM_001642	75312	+	AB033057|PRDM10|56980|PR domain containing 10##BC117415|PRDM10|56980|PR domain containing 10##BC143612|PRDM10|56980|PR domain containing 10##BC143613|PRDM10|56980|PR domain containing 10##AF503171|PRDM10|56980|PR domain containing 10##AF275817|PRDM10|56980|PR domain containing 10##NM_199438|PRDM10|56980|PR domain containing 10##NM_199439|PRDM10|56980|PR domain containing 10##NM_001143835|NFRKB|4798|nuclear factor related to kappaB binding protein##AK310354|PRDM10|56980|PR domain containing 10##BC112934|PRDM10|56980|PR domain containing 10##AL833172|PRDM10|56980|PR domain containing 10##BX648944|PRDM10|56980|PR domain containing 10##NM_020228|PRDM10|56980|PR domain containing 10##NM_199437|PRDM10|56980|PR domain containing 10##NM_001142276|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001142277|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001142278|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001642|APLP2|334|amyloid beta (A4) precursor-like protein 2	1.101863	0.0	denovo_WM_7:-30:0.236	denovo_WM_7:-31:0.236	denovo_WM_7:-32:0.236	denovo_WM_7:-33:0.236
chr1	9687091	9687271	reg1005756.p2	7.043	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-38225	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-87545	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	-87649	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	24623	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	196714	-	TSC_hg19_v1_chr1_-_9884023 AK304813	196840	-	BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1	0.0	1.198273	CTCF.p2:2:0.200	CTCF.p2:69:0.998
chr7	5271326	5271506	reg1003454.p6	7.043	+	BC016912 AF151808 NM_001033520 AY691426	-17524	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-41431	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-41501	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	51190	+	TSC_hg19_v1_chr7_-_5460842 BC140723	189490	-	AY129022 TSC_hg19_v1_chr7_-_5461555	190125	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.999647	0.0	denovo_WM_7:-27:0.842
chr11	72518997	72519144	reg1005738.p1	7.042	+	AB209473 AK095668 BC035482 BC007919 BC014033 AK310301 AK315255 NM_006645	-14374	-	TSC_hg19_v1_chr11_-_72463454 AY553630 NM_001040118	-55604	-	AB018325 NM_001135190 NM_015242	-85680	-	BC137489 BC137490 TSC_hg19_v1_chr11_+_72525455 BC069189 NM_033388 AK090597 AX746524	6335	+	BC142718 BC146660 TSC_hg19_v1_chr11_+_72525476 AK303270 AK091151 AX746810 AK093017 AX747859 BC108672	6412	+	AK296376 TSC_hg19_v1_chr11_-_72853112 AK297928 AB018312 NM_014824	333979	-	AK095668|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC035482|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC007919|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC014033|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##AK315255|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##NM_006645|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##AY553630|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1##NM_001040118|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1##AB018325|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1##NM_001135190|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1##NM_015242|ARAP1|116985|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1##BC137489|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137490|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC069189|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##NM_033388|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK090597|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC142718|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC146660|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK303270|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK091151|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK093017|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC108672|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK296376|FCHSD2|9873|FCH and double SH3 domains 2##AK297928|FCHSD2|9873|FCH and double SH3 domains 2##AB018312|FCHSD2|9873|FCH and double SH3 domains 2##NM_014824|FCHSD2|9873|FCH and double SH3 domains 2	1.226838	0.0	denovo_WM_7:57:0.215
chr13	101195179	101195309	reg1004374.p1	7.042	+	AK091974 BC001077 BC004360 NM_033110	-9245	-	NM_000282 NM_001127692 NM_001178004 TSC_hg19_v1_chr13_+_100741349 AF385926 AK298318 AK225288 AK225299 AK296771 AK315503 BC000140 X14608	-453885	+	TSC_hg19_v1_chr13_+_100634271 AF104902 AF193855	-560957	+	TSC_hg19_v1_chr13_-_101241029 AK095850 NM_001195087	45783	-	AK299859 TSC_hg19_v1_chr13_-_101327050 BX648008 AK056409 AK290345 BX647956	131812	-	NM_001079669 NM_032813 TSC_hg19_v1_chr13_-_101327108	131865	-	AK091974|A2LD1|87769|AIG2-like domain 1##BC001077|A2LD1|87769|AIG2-like domain 1##BC004360|A2LD1|87769|AIG2-like domain 1##NM_033110|A2LD1|87769|AIG2-like domain 1##NM_000282|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##NM_001127692|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##NM_001178004|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AF385926|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK298318|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK225288|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK225299|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK296771|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK315503|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##BC000140|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##X14608|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AF104902|ZIC2|7546|Zic family member 2##AF193855|ZIC2|7546|Zic family member 2##AK095850|A2LD1|87769|AIG2-like domain 1##NM_001195087|A2LD1|87769|AIG2-like domain 1##AK299859|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##BX648008|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK056409|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK290345|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##BX647956|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##NM_001079669|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##NM_032813|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4	0.026473	0.63614	CTCF.p2:21:0.282	CTCF.p2:22:0.354
chr17	44553132	44553274	reg1007251.p1	7.042	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	-114081	-	BC040501 CR749232 NM_014834	-180707	+	AK291259 NM_001193465	-250476	-	BC040501 CR749232 NM_001006607	36872	+	BC020869 AB209344 AF208864 BX647266 NM_001113738 NM_016632	103844	-	NM_006178 AF135168 AF102846 AK294001 AK294727 AK294886 AK299786 BC030613 AK226078 AK290204 AK316057 U03985	114874	+	BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_014834|LRRC37A|9884|leucine rich repeat containing 37A##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AB209344|ARL17A|51326|ADP-ribosylation factor-like 17A##AF208864|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_006178|NSF|4905|N-ethylmaleimide-sensitive factor##AF135168|NSF|4905|N-ethylmaleimide-sensitive factor##AF102846|NSF|4905|N-ethylmaleimide-sensitive factor##AK294001|NSF|4905|N-ethylmaleimide-sensitive factor##AK294727|NSF|4905|N-ethylmaleimide-sensitive factor##AK294886|NSF|4905|N-ethylmaleimide-sensitive factor##AK299786|NSF|4905|N-ethylmaleimide-sensitive factor##BC030613|NSF|4905|N-ethylmaleimide-sensitive factor##AK226078|NSF|4905|N-ethylmaleimide-sensitive factor##AK290204|NSF|4905|N-ethylmaleimide-sensitive factor##AK316057|NSF|4905|N-ethylmaleimide-sensitive factor##U03985|NSF|4905|N-ethylmaleimide-sensitive factor	0.998418	0.0	denovo_WM_7:-16:0.908
chr1	198978759	198978890	reg1005058.p1	7.040	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-72277	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-370494	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-370599	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1018045	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1032900	+	NM_001105517	1203831	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.0	0.0	
chr16	30405289	30405419	reg1005084.p2	7.040	+	AK303390 NM_052838	-11203	-	BC012161 AK301045 AF085235 AY034176 TSC_hg19_v1_chr16_-_30393883	-11478	-	NM_001214906 NM_001214907	-15721	+	NM_001214909	1078	+	TSC_hg19_v1_chr16_+_30406725 NM_152652	1387	+	TSC_hg19_v1_chr16_+_30418616 AK313930 NM_001142305 NM_016643	13301	+	AK303390|SEPT1|1731|septin 1##NM_052838|SEPT1|1731|septin 1##BC012161|SEPT1|1731|septin 1##AK301045|SEPT1|1731|septin 1##AF085235|SEPT1|1731|septin 1##AY034176|SEPT1|1731|septin 1##NM_001214906|ZNF48|197407|zinc finger protein 48##NM_001214907|ZNF48|197407|zinc finger protein 48##NM_001214909|ZNF48|197407|zinc finger protein 48##NM_152652|ZNF48|197407|zinc finger protein 48##AK313930|ZNF771|51333|zinc finger protein 771##NM_001142305|ZNF771|51333|zinc finger protein 771##NM_016643|ZNF771|51333|zinc finger protein 771	0.999393	0.0	denovo_WM_7:5:0.720
chr19	54902756	54902890	reg1004715.p2	7.040	+	AK303261 TSC_hg19_v1_chr19_-_54882123 AK097869	-20731	-	TSC_hg19_v1_chr19_-_54876672 NM_002287 NM_021706	-26128	-	TSC_hg19_v1_chr19_-_54876541 AK290415 AK315419	-26272	-	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	23828	+	AB162930 TSC_hg19_v1_chr19_+_54926723	23899	+	NM_052925	57241	+	AK303261|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK097869|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_002287|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_021706|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK290415|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK315419|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8	0.070181	0.966702	CTCF.p2:-36:0.967
chr4	68416112	68416286	reg1000942.p1	7.040	+	TSC_hg19_v1_chr4_-_68411282 NM_001812	-4921	-	TSC_hg19_v1_chr4_-_68411224 BC030695 BX648166 BC041117 AK307928 AK308170 M95724	-4991	-	CU688992 TSC_hg19_v1_chr4_-_68411171	-5076	-	TSC_hg19_v1_chr4_+_68424444 AB023483 NM_012108 AK313676 BC014958 AB528919 CU677135	8286	+	TSC_hg19_v1_chr4_-_68566842 AB014773 AB463334 AM392673 EF623993	150619	-	TSC_hg19_v1_chr4_-_68566867 AL832015 AL832458 AK094969 AK314371 BC031637 BC126484 BC126486 NM_018227	150672	-	NM_001812|CENPC1|1060|centromere protein C 1##BC030695|CENPC1|1060|centromere protein C 1##BX648166|CENPC1|1060|centromere protein C 1##BC041117|CENPC1|1060|centromere protein C 1##AK307928|CENPC1|1060|centromere protein C 1##AK308170|CENPC1|1060|centromere protein C 1##M95724|CENPC1|1060|centromere protein C 1##AB023483|STAP1|26228|signal transducing adaptor family member 1##NM_012108|STAP1|26228|signal transducing adaptor family member 1##AK313676|STAP1|26228|signal transducing adaptor family member 1##BC014958|STAP1|26228|signal transducing adaptor family member 1##AB014773|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AM392673|UBA6|55236|ubiquitin-like modifier activating enzyme 6##EF623993|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832015|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832458|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK094969|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK314371|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC031637|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126484|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126486|UBA6|55236|ubiquitin-like modifier activating enzyme 6##NM_018227|UBA6|55236|ubiquitin-like modifier activating enzyme 6	0.996443	0.0	
chr1	108345406	108345569	reg1005581.p2	7.039	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	-114363	-	AB023193 TSC_hg19_v1_chr1_+_107683657	-661883	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-662745	+	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	162113	-	AJ619961 NM_213651 AK292567	389909	-	AF123303 EU832524 EU832606 AJ619987 TSC_hg19_v1_chr1_-_108742797 AK316506	397283	-	AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AF123303|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832524|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832606|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AJ619987|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK316506|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.99839	0.0	denovo_WM_7:25:0.794
chr3	8700344	8700480	reg1004826.p1	7.039	+	TSC_hg19_v1_chr3_-_8693765 AB024705 NM_015931 BC052614	-6658	-	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	-156831	+	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	-156897	+	AK291892 NM_001234 NM_033337 BC069368 AF036365 BC102033 BC102036 BC102037 Y14747 CU686780 AF043101	75113	+	X64878 TSC_hg19_v1_chr3_-_8811121 AK313830	110674	-	TSC_hg19_v1_chr3_-_8811300 NM_000916	110872	-	AB024705|C3orf32|51066|chromosome 3 open reading frame 32##NM_015931|C3orf32|51066|chromosome 3 open reading frame 32##BC052614|C3orf32|51066|chromosome 3 open reading frame 32##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK291892|CAV3|859|caveolin 3##NM_001234|CAV3|859|caveolin 3##NM_033337|CAV3|859|caveolin 3##BC069368|CAV3|859|caveolin 3##AF036365|CAV3|859|caveolin 3##BC102033|CAV3|859|caveolin 3##BC102036|CAV3|859|caveolin 3##BC102037|CAV3|859|caveolin 3##Y14747|CAV3|859|caveolin 3##AF043101|CAV3|859|caveolin 3##X64878|OXTR|5021|oxytocin receptor##AK313830|OXTR|5021|oxytocin receptor##NM_000916|OXTR|5021|oxytocin receptor	0.0	0.032545	
chr7	2387688	2387832	reg1004148.p1	7.039	+	TSC_hg19_v1_chr7_-_2354077 CU692368 DQ892508 DQ895722 AK074544 AF121858 AK315670 BC021565 NM_013321	-33686	-	TSC_hg19_v1_chr7_-_2354018 BC007785	-33736	-	BC065367 AB025238 AB025239 AB025242 NM_198953 NM_198954 BC022818 BC040144 CU677071	-105227	+	TSC_hg19_v1_chr7_+_2394488 NM_001037283 NM_003751 AK302058	6702	+	TSC_hg19_v1_chr7_+_2394500 BC096753 U78525 AK300967	6742	+	TSC_hg19_v1_chr7_+_2394509 U62583	6756	+	DQ892508|SNX8|29886|sorting nexin 8##DQ895722|SNX8|29886|sorting nexin 8##AK074544|SNX8|29886|sorting nexin 8##AF121858|SNX8|29886|sorting nexin 8##AK315670|SNX8|29886|sorting nexin 8##BC021565|SNX8|29886|sorting nexin 8##NM_013321|SNX8|29886|sorting nexin 8##BC007785|SNX8|29886|sorting nexin 8##BC065367|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025238|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025239|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025242|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198953|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198954|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC022818|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC040144|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_001037283|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##NM_003751|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK302058|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##U78525|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK300967|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##U62583|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B	0.0	0.072312	
chr14	93602596	93602776	reg1005630.p2	7.038	+	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	-20472	-	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	-21095	-	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-213089	+	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	48514	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	48559	-	AK315522 TSC_hg19_v1_chr14_-_93651261	48582	-	BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##AK315522|MOAP1|64112|modulator of apoptosis 1	0.997709	0.0	denovo_WM_7:55:0.238	denovo_WM_7:56:0.238	denovo_WM_7:57:0.238	denovo_WM_7:58:0.238
chr4	6717619	6717763	reg1005045.p1	7.038	+	AF155654 BC066897 NM_203462 TSC_hg19_v1_chr4_-_6711607	-6085	-	TSC_hg19_v1_chr4_-_6711582 AK312676	-6104	-	TSC_hg19_v1_chr4_-_6711575 BC008087 AF258591	-6134	-	AK002092 NM_018366 TSC_hg19_v1_chr4_+_6717894	177	+	TSC_hg19_v1_chr4_+_6717915 BC067815 BC001818 AB464471 BC009890	231	+	TSC_hg19_v1_chr4_+_6784458 NM_001100590 NM_014743	66764	+	AF155654|MRFAP1L1|114932|Morf4 family associated protein 1-like 1##BC066897|MRFAP1L1|114932|Morf4 family associated protein 1-like 1##NM_203462|MRFAP1L1|114932|Morf4 family associated protein 1-like 1##AK312676|MRFAP1L1|114932|Morf4 family associated protein 1-like 1##BC008087|MRFAP1L1|114932|Morf4 family associated protein 1-like 1##AF258591|MRFAP1L1|114932|Morf4 family associated protein 1-like 1##AK002092|CNO|55330|cappuccino homolog (mouse)##NM_018366|CNO|55330|cappuccino homolog (mouse)##BC067815|CNO|55330|cappuccino homolog (mouse)##BC001818|CNO|55330|cappuccino homolog (mouse)##BC009890|CNO|55330|cappuccino homolog (mouse)##NM_001100590|KIAA0232|9778|KIAA0232##NM_014743|KIAA0232|9778|KIAA0232	0.995703	0.0	denovo_WM_7:1:0.279	denovo_WM_7:2:0.569
chr6	4880074	4880238	reg1005947.p1	7.036	+	AK296985 NM_001143970	-43825	+	TSC_hg19_v1_chr6_+_4776889 BC119682	-103235	+	TSC_hg19_v1_chr6_+_4776647 AK291601 BC108725 NM_004824	-103496	+	BC043397 NM_001143971	10069	+	TSC_hg19_v1_chr6_+_5004043 AK094934	123870	+	TSC_hg19_v1_chr6_-_5004262 BC017871 NM_006638	124114	-	AK296985|CDYL|9425|chromodomain protein, Y-like##NM_001143970|CDYL|9425|chromodomain protein, Y-like##BC119682|CDYL|9425|chromodomain protein, Y-like##AK291601|CDYL|9425|chromodomain protein, Y-like##BC108725|CDYL|9425|chromodomain protein, Y-like##NM_004824|CDYL|9425|chromodomain protein, Y-like##BC043397|CDYL|9425|chromodomain protein, Y-like##NM_001143971|CDYL|9425|chromodomain protein, Y-like##AK094934|LOC285778|285778|uncharacterized LOC285778##BC017871|RPP40|10799|ribonuclease P/MRP 40kDa subunit##NM_006638|RPP40|10799|ribonuclease P/MRP 40kDa subunit	0.0	0.0	
chr20	46067331	46067482	reg1004897.p1	7.035	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-81918	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-90759	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-139837	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	63216	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	63278	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	347346	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	1.566293	0.0	denovo_WM_7:-15:0.431	denovo_WM_7:-16:0.431	denovo_WM_7:-37:0.577
chr10	119412535	119412692	reg1000943.p1	7.034	+	TSC_hg19_v1_chr10_+_119302713 AB463605	-109870	+	AF301598 NM_001165924 NM_004098	-110658	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-110697	-	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	393431	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	393817	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	689211	-	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A	0.0	0.0	
chr1	67911837	67911976	reg1005407.p1	7.034	+	TSC_hg19_v1_chr1_-_67896101 NM_001018067 NM_001018068 NM_001018069 NM_015640	-15789	-	BX647139 TSC_hg19_v1_chr1_-_67896097	-15809	-	TSC_hg19_v1_chr1_-_67896086 AK312256	-15821	-	TSC_hg19_v1_chr1_+_68150883 AK314991 NM_001199741 NM_001199742 NM_001924 M60974 BC011757 DQ008445 EF581092 EF614238	239004	+	TSC_hg19_v1_chr1_+_68151094 AB463698 AM393439 DQ893229 DQ896558	239228	+	AK124028 TSC_hg19_v1_chr1_+_68297985 AK096081	386082	+	NM_001018067|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018068|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018069|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_015640|SERBP1|26135|SERPINE1 mRNA binding protein 1##BX647139|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK314991|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199741|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199742|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001924|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##M60974|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##BC011757|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ008445|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF581092|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF614238|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AM393439|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ893229|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ896558|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AK124028|LOC100289178|100289178|uncharacterized LOC100289178	0.949636	0.0	denovo_WM_7:-33:0.579
chr2	118888759	118888894	reg1004479.p1	7.034	+	AK298599 TSC_hg19_v1_chr2_+_118846046 AK291433 AF527632 BC022475 NM_016133 BX647805 AK021692	-42763	+	TSC_hg19_v1_chr2_-_118771720 NM_019044	-117093	-	TSC_hg19_v1_chr2_-_118771677 BC028609	-117142	-	NM_001426	716932	-	BC016004 NM_006770 AK313139 AK301407 AB590405 AF035819 CU677543 DQ892823 DQ892833 DQ896080 AK297030	810994	+	TSC_hg19_v1_chr2_-_119916341 AF525315 BC043189 BC067896 BC142965 NM_182528	1027578	-	AK298599|INSIG2|51141|insulin induced gene 2##AK291433|INSIG2|51141|insulin induced gene 2##AF527632|INSIG2|51141|insulin induced gene 2##BC022475|INSIG2|51141|insulin induced gene 2##NM_016133|INSIG2|51141|insulin induced gene 2##BX647805|INSIG2|51141|insulin induced gene 2##AK021692|INSIG2|51141|insulin induced gene 2##NM_019044|CCDC93|54520|coiled-coil domain containing 93##BC028609|CCDC93|54520|coiled-coil domain containing 93##NM_001426|EN1|2019|engrailed homeobox 1##BC016004|MARCO|8685|macrophage receptor with collagenous structure##NM_006770|MARCO|8685|macrophage receptor with collagenous structure##AK313139|MARCO|8685|macrophage receptor with collagenous structure##AK301407|MARCO|8685|macrophage receptor with collagenous structure##AF035819|MARCO|8685|macrophage receptor with collagenous structure##DQ892823|MARCO|8685|macrophage receptor with collagenous structure##DQ892833|MARCO|8685|macrophage receptor with collagenous structure##DQ896080|MARCO|8685|macrophage receptor with collagenous structure##AK297030|MARCO|8685|macrophage receptor with collagenous structure##AF525315|C1QL2|165257|complement component 1, q subcomponent-like 2##BC043189|C1QL2|165257|complement component 1, q subcomponent-like 2##BC067896|C1QL2|165257|complement component 1, q subcomponent-like 2##BC142965|C1QL2|165257|complement component 1, q subcomponent-like 2##NM_182528|C1QL2|165257|complement component 1, q subcomponent-like 2	0.998513	0.0	denovo_WM_7:33:0.449	denovo_WM_7:34:0.449
chr4	160858943	160859079	reg1004986.p1	7.034	+	AK294459 NM_014247	-670014	+	AK058100 NM_152543	-902679	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-1168726	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	2226140	-	TSC_hg19_v1_chr4_-_164088002 AK097352	3228981	-	TSC_hg19_v1_chr4_-_164088043 AK308601	3229026	-	AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##AK308601|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.320136	0.0	
chr12	80693883	80694039	reg1005061.p1	7.031	+	NM_173591	-90729	+	AF458589 BC092481 NM_001143885 NM_001244990	-364727	-	TSC_hg19_v1_chr12_-_80328937 NM_002480	-364995	-	NM_001145026	144164	+	NM_002469 AK313287 X52011 BC017834 AB587443 CU676084 DQ893248 DQ896577 CR407641 CR541763	407491	+	TSC_hg19_v1_chr12_+_81110690 NM_005593 BC069373 X14894 AB528948 BT019399	416804	+	NM_173591|OTOGL|283310|otogelin-like##AF458589|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC092481|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001143885|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001244990|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_002480|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001145026|PTPRQ|374462|protein tyrosine phosphatase, receptor type, Q##NM_002469|MYF6|4618|myogenic factor 6 (herculin)##AK313287|MYF6|4618|myogenic factor 6 (herculin)##X52011|MYF6|4618|myogenic factor 6 (herculin)##BC017834|MYF6|4618|myogenic factor 6 (herculin)##DQ893248|MYF6|4618|myogenic factor 6 (herculin)##DQ896577|MYF6|4618|myogenic factor 6 (herculin)##CR407641|MYF6|4618|myogenic factor 6 (herculin)##CR541763|MYF6|4618|myogenic factor 6 (herculin)##NM_005593|MYF5|4617|myogenic factor 5##BC069373|MYF5|4617|myogenic factor 5##X14894|MYF5|4617|myogenic factor 5##BT019399|MYF5|4617|myogenic factor 5	0.995052	0.0	denovo_WM_7:30:0.927
chr10	55599360	55599504	reg1004673.p1	7.030	+	AY826184 AB527950 AF360991 BC096179 BC096180 BC096181 BC096182 BC069338 NM_000242 X15422	-1068006	-	TSC_hg19_v1_chr10_+_54074042 NM_012242 AK314902 BC001539 AY359005 AF127563 AF177394 AB528499 CU674754 DQ892222 DQ895421	-1525317	+	CU688440 TSC_hg19_v1_chr10_-_53459366 AY130299 BC028239 AK222574 AL136747 AK314318 NM_015235	-2140085	-	AL834134 AY029205 AY029237 EU718480 EU718481 EU718482 NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_033056	961566	-	NM_001190478 TSC_hg19_v1_chr10_+_57358800	1759342	+	TSC_hg19_v1_chr10_-_58121017 AF067656 AK225509	2521582	-	AY826184|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##AF360991|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096179|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096180|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096181|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096182|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC069338|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##NM_000242|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##X15422|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##NM_012242|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AK314902|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##BC001539|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AY359005|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AF127563|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AF177394|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##DQ892222|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##DQ895421|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AY130299|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##BC028239|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AK222574|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AL136747|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AK314318|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##NM_015235|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AL834134|PCDH15|65217|protocadherin-related 15##AY029205|PCDH15|65217|protocadherin-related 15##AY029237|PCDH15|65217|protocadherin-related 15##EU718480|PCDH15|65217|protocadherin-related 15##EU718481|PCDH15|65217|protocadherin-related 15##EU718482|PCDH15|65217|protocadherin-related 15##NM_001142763|PCDH15|65217|protocadherin-related 15##NM_001142764|PCDH15|65217|protocadherin-related 15##NM_001142765|PCDH15|65217|protocadherin-related 15##NM_001142766|PCDH15|65217|protocadherin-related 15##NM_001142767|PCDH15|65217|protocadherin-related 15##NM_001142768|PCDH15|65217|protocadherin-related 15##NM_001142769|PCDH15|65217|protocadherin-related 15##NM_001142770|PCDH15|65217|protocadherin-related 15##NM_001142771|PCDH15|65217|protocadherin-related 15##NM_001142772|PCDH15|65217|protocadherin-related 15##NM_001142773|PCDH15|65217|protocadherin-related 15##NM_033056|PCDH15|65217|protocadherin-related 15##NM_001190478|MTRNR2L5|100463289|MT-RNR2-like 5##AF067656|ZWINT|11130|ZW10 interactor##AK225509|ZWINT|11130|ZW10 interactor	0.996151	0.750218	denovo_WM_7:9:0.900	CTCF.p2:-31:0.750
chr12	31756821	31757001	reg1000672.p2	7.030	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-12993	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-277772	-	TSC_hg19_v1_chr12_-_31479085 AF212220	-277810	-	AK290248 NM_001135864	43182	+	BC039535 NM_173802	55209	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	55703	+	BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20	1.94085	0.0	denovo_WM_7:32:0.399	denovo_WM_7:33:0.298	denovo_WM_7:50:0.288	denovo_WM_7:51:0.289	denovo_WM_7:52:0.357
chr14	77428112	77428272	reg1004709.p2	7.030	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-135397	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-148930	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-148982	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	66492	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	66868	-	AK124327 TSC_hg19_v1_chr14_-_77542533	114341	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.0	0.0	
chr21	38834015	38834170	reg1005876.p1	7.029	+	NM_130438 NM_001396 U52373 D85759 U58496	-41472	+	D86550 NM_130436	-42886	+	AF108830 NM_101395 AB015283 AB015284	-94222	+	D87327 NM_002240 TSC_hg19_v1_chr21_-_39288761	454619	-	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	659309	-	BC013327 NM_002243	794571	+	NM_130438|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_001396|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U52373|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D85759|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U58496|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D86550|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_130436|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AF108830|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_101395|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015283|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015284|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D87327|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_002240|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	0.996888	0.0	denovo_WM_7:78:0.424	denovo_WM_7:79:0.424
chr3	150047269	150047400	reg1004888.p1	7.029	+	BC012363 TSC_hg19_v1_chr3_+_149689094	-358254	+	TSC_hg19_v1_chr3_-_149688960 BC043646	-358405	-	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	-358638	-	TSC_hg19_v1_chr3_+_150126084 AK297383 AB014569	78738	+	TSC_hg19_v1_chr3_+_150126774 BC044643 NM_014779	79429	+	X75694 CR533472 TSC_hg19_v1_chr3_-_150264030	216636	-	BC012363|LOC646903|646903|uncharacterized LOC646903##BC043646|PFN2|5217|profilin 2##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##AK297383|TSC22D2|9819|TSC22 domain family, member 2##AB014569|TSC22D2|9819|TSC22 domain family, member 2##BC044643|TSC22D2|9819|TSC22 domain family, member 2##NM_014779|TSC22D2|9819|TSC22 domain family, member 2##X75694|SERP1|27230|stress-associated endoplasmic reticulum protein 1##CR533472|SERP1|27230|stress-associated endoplasmic reticulum protein 1	1.321396	0.0	denovo_WM_7:-22:0.235	denovo_WM_7:-37:0.229
chr15	20973369	20973484	reg1005647.p2	7.027	+	NM_001145004	-226313	-	TSC_hg19_v1_chr15_-_20711449 BC070076 BC033888 BC094757	-261989	-	None	None	None	NM_207355 BC066981	98552	-	NM_207355 BC066981	1109712	-	BC136985 NM_001004719	1395051	+	NM_001145004|GOLGA6L6|727832|golgin A6 family-like 6##BC033888|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##BC094757|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2	1.839066	0.0	denovo_WM_7:-39:0.938	denovo_WM_7:-70:0.632
chr2	147940014	147940149	reg1004719.p1	7.027	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-2662160	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	-2662450	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-2664878	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	662036	+	TSC_hg19_v1_chr2_+_148602300 AK314124	662254	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	662564	+	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA	0.0	0.0	
chr2	25419430	25419550	reg1005220.p2	7.027	+	NM_000939 NM_001035256	-27932	-	TSC_hg19_v1_chr2_+_25264954 NM_014971 AB023170	-154513	+	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	-224623	-	TSC_hg19_v1_chr2_-_25466801 BC018214	47318	-	TSC_hg19_v1_chr2_-_25467080 BC023612	47645	-	TSC_hg19_v1_chr2_-_25468920 AK025230	49488	-	NM_000939|POMC|5443|proopiomelanocortin##NM_001035256|POMC|5443|proopiomelanocortin##NM_014971|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AB023170|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC018214|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.044884	0.9982	CTCF.p2:-9:0.998
chr3	186759931	186760074	reg1006811.p1	7.027	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-20330	+	U67847 TSC_hg19_v1_chr3_+_186714361	-45654	+	X17247 TSC_hg19_v1_chr3_+_186648632	-111425	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	97254	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	155340	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	249637	-	AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)	0.360822	0.0	
chr6	160318777	160318899	reg1005082.p1	7.027	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	-97495	+	TSC_hg19_v1_chr6_+_160211500 NM_014161 AF161556 BC001623 AL136633 AK292647 AB528185 AM393775 CR533491	-107288	+	TSC_hg19_v1_chr6_+_160210978 AK311391	-107835	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	9141	+	TSC_hg19_v1_chr6_+_160390137 NM_000876 Y00285 J03528	71295	+	NM_003057 NM_153187 X98332 BC126364 AK289887 U77086 AB527951 HQ258293	224076	+	AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_014161|MRPL18|29074|mitochondrial ribosomal protein L18##AF161556|MRPL18|29074|mitochondrial ribosomal protein L18##BC001623|MRPL18|29074|mitochondrial ribosomal protein L18##AL136633|MRPL18|29074|mitochondrial ribosomal protein L18##AM393775|MRPL18|29074|mitochondrial ribosomal protein L18##CR533491|MRPL18|29074|mitochondrial ribosomal protein L18##AK311391|MRPL18|29074|mitochondrial ribosomal protein L18##BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene##NM_000876|IGF2R|3482|insulin-like growth factor 2 receptor##Y00285|IGF2R|3482|insulin-like growth factor 2 receptor##J03528|IGF2R|3482|insulin-like growth factor 2 receptor##NM_003057|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##NM_153187|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##X98332|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC126364|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##AK289887|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##U77086|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##HQ258293|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1	0.99896	0.0	denovo_WM_7:95:0.763
chr1	240190431	240190552	reg1005729.p2	7.026	+	AF279779 NM_000740	-398119	+	TSC_hg19_v1_chr1_+_239550016 AK056349	-640549	+	AK314151 NM_021186	-2136270	-	TSC_hg19_v1_chr1_+_240255182 NM_020066	64686	+	BC046632 TSC_hg19_v1_chr1_-_240775431	584918	-	AK024848 TSC_hg19_v1_chr1_-_240775456 NM_022469	584963	-	AF279779|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_000740|CHRM3|1131|cholinergic receptor, muscarinic 3##AK056349|CHRM3|1131|cholinergic receptor, muscarinic 3##AK314151|ZP4|57829|zona pellucida glycoprotein 4##NM_021186|ZP4|57829|zona pellucida glycoprotein 4##NM_020066|FMN2|56776|formin 2##BC046632|GREM2|64388|gremlin 2##AK024848|GREM2|64388|gremlin 2##NM_022469|GREM2|64388|gremlin 2	0.974062	0.696767	denovo_WM_7:26:0.864	CTCF.p2:-36:0.697
chr1	57045147	57045322	reg1000642.p1	7.026	+	AK312439 TSC_hg19_v1_chr1_-_57045216	-17	-	AF017786 U79294 AF480883 TSC_hg19_v1_chr1_-_57045132	-104	-	AF043329 TSC_hg19_v1_chr1_-_57045054 BC009196	-215	-	TSC_hg19_v1_chr1_-_57045237 NM_003713	11	-	TSC_hg19_v1_chr1_+_57110986 AK314011 NM_006252 U06454 BC069680 BC069740 BC069823 EF056019	65668	+	AK125198 NM_001004303 TSC_hg19_v1_chr1_-_57285379	240139	-	AK312439|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF017786|PPAP2B|8613|phosphatidic acid phosphatase type 2B##U79294|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF480883|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF043329|PPAP2B|8613|phosphatidic acid phosphatase type 2B##BC009196|PPAP2B|8613|phosphatidic acid phosphatase type 2B##NM_003713|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK314011|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##NM_006252|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##U06454|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069680|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069740|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069823|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##EF056019|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##AK125198|C1orf168|199920|chromosome 1 open reading frame 168##NM_001004303|C1orf168|199920|chromosome 1 open reading frame 168	0.0	0.0	
chr16	31117077	31117168	reg1005323.p1	7.025	+	TSC_hg19_v1_chr16_-_31106250 AK289790 AK312005 AF176924 AY466113 NM_024006 NM_206824	-10902	-	TSC_hg19_v1_chr16_-_31106093 AK129513	-11015	-	AY423044 AY521634 BC000828 TSC_hg19_v1_chr16_-_31106058 BC002911	-11052	-	NM_001122957 NM_005881 TSC_hg19_v1_chr16_+_31119706	2563	+	TSC_hg19_v1_chr16_+_31119738 BC007363 AK130145	2614	+	TSC_hg19_v1_chr16_+_31119750 BC009872	2627	+	AK289790|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AK312005|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AF176924|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AY466113|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##NM_024006|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##NM_206824|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AK129513|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AY423044|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AY521634|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##BC000828|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##BC002911|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##NM_001122957|BCKDK|10295|branched chain ketoacid dehydrogenase kinase##NM_005881|BCKDK|10295|branched chain ketoacid dehydrogenase kinase##BC007363|BCKDK|10295|branched chain ketoacid dehydrogenase kinase##AK130145|BCKDK|10295|branched chain ketoacid dehydrogenase kinase##BC009872|BCKDK|10295|branched chain ketoacid dehydrogenase kinase	2.599363	0.0	denovo_WM_7:-68:0.710	denovo_WM_7:-85:0.553	denovo_WM_7:-102:0.272
chr16	83480542	83480635	reg1003643.p1	7.025	+	TSC_hg19_v1_chr16_+_82660641 AK304733 BC012615 AB384879 CU688968 DQ891713 DQ894890	-819919	+	AK304592 TSC_hg19_v1_chr16_+_82660573 AK295886 AK298612 AK307862 EU190357 EU190358 BC028624 BC030653	-819999	+	TSC_hg19_v1_chr16_+_82660390 NM_001220488 NM_001220489 NM_001220490 NM_001220491 NM_001220492 NM_001257	-820194	+	TSC_hg19_v1_chr16_+_83841582 NM_001537 BX537440 BX648972 AF068754	361012	+	TSC_hg19_v1_chr16_+_83841642 BC007515 AY320409 AK172732 AB463720 EU831680	361068	+	BC052592 NM_012213 TSC_hg19_v1_chr16_+_83932732 AF090834 AF153679 BC000286 AF097832	452181	+	AK304733|CDH13|1012|cadherin 13, H-cadherin (heart)##BC012615|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ891713|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ894890|CDH13|1012|cadherin 13, H-cadherin (heart)##AK304592|CDH13|1012|cadherin 13, H-cadherin (heart)##AK295886|CDH13|1012|cadherin 13, H-cadherin (heart)##AK298612|CDH13|1012|cadherin 13, H-cadherin (heart)##AK307862|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190357|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190358|CDH13|1012|cadherin 13, H-cadherin (heart)##BC028624|CDH13|1012|cadherin 13, H-cadherin (heart)##BC030653|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220488|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220489|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220490|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220491|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220492|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001257|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001537|HSBP1|3281|heat shock factor binding protein 1##BX537440|HSBP1|3281|heat shock factor binding protein 1##BX648972|HSBP1|3281|heat shock factor binding protein 1##AF068754|HSBP1|3281|heat shock factor binding protein 1##BC007515|HSBP1|3281|heat shock factor binding protein 1##AY320409|HSBP1|3281|heat shock factor binding protein 1##AK172732|HSBP1|3281|heat shock factor binding protein 1##EU831680|HSBP1|3281|heat shock factor binding protein 1##BC052592|MLYCD|23417|malonyl-CoA decarboxylase##NM_012213|MLYCD|23417|malonyl-CoA decarboxylase##AF090834|MLYCD|23417|malonyl-CoA decarboxylase##AF153679|MLYCD|23417|malonyl-CoA decarboxylase##BC000286|MLYCD|23417|malonyl-CoA decarboxylase##AF097832|MLYCD|23417|malonyl-CoA decarboxylase	1.254323	0.874312	CTCF.p2:-14:0.874
chr17	5202879	5203011	reg1004382.p2	7.025	+	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	-17279	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-64844	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-107565	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	119980	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	120015	+	TSC_hg19_v1_chr17_-_5322983 NM_002532	120075	-	NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein##NM_002532|NUP88|4927|nucleoporin 88kDa	2.772097	0.0	denovo_WM_7:56:0.608	denovo_WM_7:72:0.812	denovo_WM_7:89:0.440	denovo_WM_7:90:0.457
chr3	18464982	18465161	reg1002547.p1	7.025	+	TSC_hg19_v1_chr3_-_17784106 NM_001134380	-680904	-	D86965 NM_014744	-682673	-	AK310539 NM_001134381	-723560	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	1726	-	BC001744 NM_001131010	15162	-	AK295633 AY053503 NM_144633 AB209053 AK309034	724933	+	NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8	0.0	0.0	
chr12	111019207	111019306	reg1003838.p1	7.024	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-79181	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-79346	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-112587	+	TSC_hg19_v1_chr12_-_111020755 AY357944	1537	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	1814	-	AK124744 TSC_hg19_v1_chr12_-_111021124	1870	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	0.38341	0.0	denovo_WM_7:-32:0.353
chr17	62295605	62295759	reg1004488.p1	7.024	+	AF059198 AB209869 TSC_hg19_v1_chr17_-_62207502 NM_001433 AK292403	-88166	-	TSC_hg19_v1_chr17_-_62207401 AB385116 BC130405 BC130407	-88284	-	TSC_hg19_v1_chr17_-_62097985 AK295382 AK309953 NM_001099786 NM_001099787 NM_001099788 NM_001099789	-197700	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	44904	-	TSC_hg19_v1_chr17_-_62340645 BC036672	44965	-	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	44972	-	AF059198|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AB209869|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##NM_001433|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK292403|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130405|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130407|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK295382|ICAM2|3384|intercellular adhesion molecule 2##NM_001099786|ICAM2|3384|intercellular adhesion molecule 2##NM_001099787|ICAM2|3384|intercellular adhesion molecule 2##NM_001099788|ICAM2|3384|intercellular adhesion molecule 2##NM_001099789|ICAM2|3384|intercellular adhesion molecule 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2	1.788428	0.0	denovo_WM_7:90:0.232	denovo_WM_7:91:0.671	denovo_WM_7:106:0.683	denovo_WM_7:107:0.209
chr2	191500665	191500809	reg1006478.p1	7.024	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-101271	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-101310	-	AK098085 TSC_hg19_v1_chr2_+_191301120	-199667	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	13229	+	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	244809	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	244820	+	NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK098085|MFSD6|54842|major facilitator superfamily domain containing 6##NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase	0.082038	0.882327	CTCF.p2:-15:0.882
chr19	50041271	50041430	reg1003781.p1	7.021	+	TSC_hg19_v1_chr19_+_50031259 AY358423 BC013436	-10089	+	AY195859 NM_020650	-10476	+	TSC_hg19_v1_chr19_+_50016643 AK075510 BC020421 AK299124 AB463631 DQ893544 DQ893808 BT006828	-24718	+	BC047314 TSC_hg19_v1_chr19_-_50083811 BC009299 BC010077 NM_015953 AK092444 AX747549 AK291535 AK300720	42451	-	AF132959 TSC_hg19_v1_chr19_-_50083814	42464	-	NM_000951 BC026032	43257	+	AY358423|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##BC013436|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##AY195859|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##NM_020650|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##AK075510|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC020421|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##AK299124|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##DQ893544|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##DQ893808|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BT006828|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC047314|NOSIP|51070|nitric oxide synthase interacting protein##BC009299|NOSIP|51070|nitric oxide synthase interacting protein##BC010077|NOSIP|51070|nitric oxide synthase interacting protein##NM_015953|NOSIP|51070|nitric oxide synthase interacting protein##AK092444|NOSIP|51070|nitric oxide synthase interacting protein##AK291535|NOSIP|51070|nitric oxide synthase interacting protein##AK300720|NOSIP|51070|nitric oxide synthase interacting protein##AF132959|NOSIP|51070|nitric oxide synthase interacting protein##NM_000951|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##BC026032|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2	1.983982	0.0	denovo_WM_7:-96:0.929
chr3	151987433	151987613	reg1002202.p4	7.021	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-178	-	TSC_hg19_v1_chr3_+_151986753 BC050535 BC043493	-781	+	NM_021038 NM_207292	-1695	+	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	29670	+	AY358260 NM_001123228	71255	-	NM_002563 Z49205	565212	+	AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##BC050535|MBNL1|4154|muscleblind-like (Drosophila)##BC043493|MBNL1|4154|muscleblind-like (Drosophila)##NM_021038|MBNL1|4154|muscleblind-like (Drosophila)##NM_207292|MBNL1|4154|muscleblind-like (Drosophila)##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1	0.978041	0.0	denovo_WM_7:-1:0.964
chr12	104891585	104891711	reg1005339.p2	7.020	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-40561	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-40840	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-40877	+	TSC_hg19_v1_chr12_+_105153261 AF131762	261629	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	430615	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	488442	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.995478	0.0	
chr1	243890989	243891111	reg1003711.p1	7.020	+	TSC_hg19_v1_chr1_+_243419405 AK297105 AF250731	-471615	+	BC032454 TSC_hg19_v1_chr1_+_243419371 AK299249	-471679	+	TSC_hg19_v1_chr1_+_243419357 AK299212	-471695	+	AF135794 AB463341 AM392791 AM392849 AJ245709 AF124141 AK308052 BC020479 AF085234 AY005799 BC121154 NM_005465 NM_181690	115477	-	AL117525 NM_001206729	115835	-	TSC_hg19_v1_chr1_+_244214553 NM_205768	323506	+	AK297105|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF250731|SDCCAG8|10806|serologically defined colon cancer antigen 8##BC032454|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299249|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299212|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF135794|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392791|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392849|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AJ245709|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF124141|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK308052|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC020479|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF085234|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AY005799|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC121154|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_005465|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_181690|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_205768|ZNF238|10472|zinc finger protein 238	0.361605	0.0	denovo_WM_7:30:0.343
chr16	30346977	30347127	reg1004776.p2	7.020	+	TSC_hg19_v1_chr16_-_30346695 AK289905 BC063703	-353	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-136484	+	BC022832 NM_001031827 NM_001039182	-141426	-	BC013854 NM_001243646	19202	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	19548	-	NM_006110 TSC_hg19_v1_chr16_-_30366682	19630	-	AK289905|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC063703|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##BC013854|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_001243646|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_006110|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2	1.07237	0.0	denovo_WM_7:-30:0.983
chr16	76606405	76606514	reg1005750.p1	7.019	+	NM_138994 AK057327 BC017266	-262704	+	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	-295219	+	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	-924752	+	TSC_hg19_v1_chr16_+_77224857 BC024277 NM_014940	618383	+	AK023374 TSC_hg19_v1_chr16_+_77224865	618426	+	TSC_hg19_v1_chr16_+_77225092 AK023896 AK296467	618615	+	NM_138994|CNTNAP4|85445|contactin associated protein-like 4##AK057327|CNTNAP4|85445|contactin associated protein-like 4##BC017266|CNTNAP4|85445|contactin associated protein-like 4##AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4##AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC024277|MON1B|22879|MON1 homolog B (yeast)##NM_014940|MON1B|22879|MON1 homolog B (yeast)##AK023374|MON1B|22879|MON1 homolog B (yeast)##AK023896|MON1B|22879|MON1 homolog B (yeast)##AK296467|MON1B|22879|MON1 homolog B (yeast)	0.913358	0.0	denovo_WM_7:35:0.240	denovo_WM_7:48:0.262
chr20	3825496	3825594	reg1004051.p1	7.019	+	TSC_hg19_v1_chr20_+_3801202 NM_001204446 NM_001204447 NM_018347 BC011985 AK002030 AK093332 BC043344	-24347	+	TSC_hg19_v1_chr20_+_3776956 S78187 Z68092 BC006395 M81934	-48540	+	AK092713 FR695900 FR695901 NM_004358 NM_021872 NM_021873 TSC_hg19_v1_chr20_+_3776429 BX647988 BC051711	-49112	+	TSC_hg19_v1_chr20_+_3827524 NM_001206491 NM_020746 AK296897 AB097003 AK123956 AK291785 BX649084 AK023799 AX775775 BC044952 AK130992	1951	+	AK021791 NM_024960 TSC_hg19_v1_chr20_+_3869569	43987	+	TSC_hg19_v1_chr20_+_3869593 AF494409 NM_153638	44122	+	NM_001204446|C20orf29|55317|chromosome 20 open reading frame 29##NM_001204447|C20orf29|55317|chromosome 20 open reading frame 29##NM_018347|C20orf29|55317|chromosome 20 open reading frame 29##BC011985|C20orf29|55317|chromosome 20 open reading frame 29##AK002030|C20orf29|55317|chromosome 20 open reading frame 29##AK093332|C20orf29|55317|chromosome 20 open reading frame 29##BC043344|C20orf29|55317|chromosome 20 open reading frame 29##S78187|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##Z68092|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##BC006395|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##M81934|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##AK092713|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##FR695900|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##FR695901|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_004358|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_021872|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_021873|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##BX647988|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##BC051711|CDC25B|994|cell division cycle 25 homolog B (S. pombe)##NM_001206491|MAVS|57506|mitochondrial antiviral signaling protein##NM_020746|MAVS|57506|mitochondrial antiviral signaling protein##AK296897|MAVS|57506|mitochondrial antiviral signaling protein##AB097003|MAVS|57506|mitochondrial antiviral signaling protein##AK123956|MAVS|57506|mitochondrial antiviral signaling protein##AK291785|MAVS|57506|mitochondrial antiviral signaling protein##BX649084|MAVS|57506|mitochondrial antiviral signaling protein##AK023799|MAVS|57506|mitochondrial antiviral signaling protein##BC044952|MAVS|57506|mitochondrial antiviral signaling protein##AK130992|MAVS|57506|mitochondrial antiviral signaling protein##AK021791|PANK2|80025|pantothenate kinase 2##NM_024960|PANK2|80025|pantothenate kinase 2##AF494409|PANK2|80025|pantothenate kinase 2##NM_153638|PANK2|80025|pantothenate kinase 2	0.766255	0.0	denovo_WM_7:-4:0.399
chr12	9822182	9822337	reg1005227.p1	7.018	+	TSC_hg19_v1_chr12_+_9800760 AK096274	-21363	+	BC027885 BC113997 BC114516 U11276 NM_002258 AK292022	-61763	-	TSC_hg19_v1_chr12_-_9600810 BC035635 BC128040 BC111733	-221461	-	BC063128 NM_001197318 NM_013269 AK310150 NM_001004419 AK310554 AK313554 BC019883 AF133299 AF285087 CU676474 FN813349 FN813350 FN813351 NM_001197317 NM_001197319	8	+	AF518873 BC093857 BC093859 NM_001253748 NM_001253750 NM_172004	63617	-	AY238518 CU675505 DQ893175 DQ896474 L07555 AK291869 AK303174 AK303383 BC007037 NM_001781 Z22576	91196	-	AK096274|LOC374443|374443|CLR pseudogene##BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC035635|DDX12P|440081|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC063128|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197318|CLEC2D|29121|C-type lectin domain family 2, member D##NM_013269|CLEC2D|29121|C-type lectin domain family 2, member D##AK310150|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001004419|CLEC2D|29121|C-type lectin domain family 2, member D##AK310554|CLEC2D|29121|C-type lectin domain family 2, member D##AK313554|CLEC2D|29121|C-type lectin domain family 2, member D##BC019883|CLEC2D|29121|C-type lectin domain family 2, member D##AF133299|CLEC2D|29121|C-type lectin domain family 2, member D##AF285087|CLEC2D|29121|C-type lectin domain family 2, member D##FN813349|CLEC2D|29121|C-type lectin domain family 2, member D##FN813350|CLEC2D|29121|C-type lectin domain family 2, member D##FN813351|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197317|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197319|CLEC2D|29121|C-type lectin domain family 2, member D##AF518873|CLECL1|160365|C-type lectin-like 1##BC093857|CLECL1|160365|C-type lectin-like 1##BC093859|CLECL1|160365|C-type lectin-like 1##NM_001253748|CLECL1|160365|C-type lectin-like 1##NM_001253750|CLECL1|160365|C-type lectin-like 1##NM_172004|CLECL1|160365|C-type lectin-like 1##AY238518|CD69|969|CD69 molecule##DQ893175|CD69|969|CD69 molecule##DQ896474|CD69|969|CD69 molecule##L07555|CD69|969|CD69 molecule##AK291869|CD69|969|CD69 molecule##AK303174|CD69|969|CD69 molecule##AK303383|CD69|969|CD69 molecule##BC007037|CD69|969|CD69 molecule##NM_001781|CD69|969|CD69 molecule##Z22576|CD69|969|CD69 molecule	0.943054	0.0	denovo_WM_7:-7:0.838
chr14	75345166	75345265	reg1005710.p2	7.018	+	BC105720 BC105721 BC105927 NM_001080408 NM_001243007	-14680	-	TSC_hg19_v1_chr14_+_75283667 BC023570	-61515	+	TSC_hg19_v1_chr14_+_75230066 AK095760 NM_019589	-115183	+	TSC_hg19_v1_chr14_+_75348624 NM_001244883 NM_001933 AK289414 BX248276 AK299505 AK316463 AK300396 BC000302 BC001922 BC002735 BX248764 D16373 CR456727 CU674146 L37418 BX248774	3410	+	NM_031464	43929	-	TSC_hg19_v1_chr14_-_75389964 BC036574 AK226137 AK054800	44738	-	BC105720|PROX2|283571|prospero homeobox 2##BC105721|PROX2|283571|prospero homeobox 2##BC105927|PROX2|283571|prospero homeobox 2##NM_001080408|PROX2|283571|prospero homeobox 2##NM_001243007|PROX2|283571|prospero homeobox 2##BC023570|YLPM1|56252|YLP motif containing 1##AK095760|YLPM1|56252|YLP motif containing 1##NM_019589|YLPM1|56252|YLP motif containing 1##NM_001244883|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_001933|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK289414|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248276|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK299505|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK316463|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK300396|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC000302|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC001922|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC002735|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248764|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##D16373|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##CR456727|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##L37418|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248774|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_031464|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##BC036574|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK226137|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK054800|RPS6KL1|83694|ribosomal protein S6 kinase-like 1	0.998572	0.403781	CTCF.p2:4:0.404	denovo_WM_7:-53:0.494	denovo_WM_7:-54:0.494
chr10	13967608	13967732	reg1000793.p2	7.017	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-217981	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-338683	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-338727	+	TSC_hg19_v1_chr10_-_14050453 AK001072	82822	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	405180	-	TSC_hg19_v1_chr10_-_14646259 BC064407	678647	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	1.990389	0.0	
chr22	20810670	20810765	reg1005304.p2	7.017	+	TSC_hg19_v1_chr22_-_20792108 AB024433 AF522196 NM_153334 NM_182895	-18591	-	AB052951 TSC_hg19_v1_chr22_-_20792077	-18655	-	TSC_hg19_v1_chr22_+_20748463 BC056902 X92715 AK291358 AK299569 NM_003426 BC048295 BC013741	-62272	+	AK222850 TSC_hg19_v1_chr22_-_20850077 AK290669 AK294682 AK027266 BC015923 NM_032775	39405	-	TSC_hg19_v1_chr22_+_20861871 AK315540	51149	+	TSC_hg19_v1_chr22_+_20861877 AK074268	51159	+	AB024433|SCARF2|91179|scavenger receptor class F, member 2##AF522196|SCARF2|91179|scavenger receptor class F, member 2##NM_153334|SCARF2|91179|scavenger receptor class F, member 2##NM_182895|SCARF2|91179|scavenger receptor class F, member 2##AB052951|SCARF2|91179|scavenger receptor class F, member 2##BC056902|ZNF74|7625|zinc finger protein 74##X92715|ZNF74|7625|zinc finger protein 74##AK291358|ZNF74|7625|zinc finger protein 74##AK299569|ZNF74|7625|zinc finger protein 74##NM_003426|ZNF74|7625|zinc finger protein 74##BC048295|ZNF74|7625|zinc finger protein 74##BC013741|ZNF74|7625|zinc finger protein 74##AK222850|KLHL22|84861|kelch-like 22 (Drosophila)##AK290669|KLHL22|84861|kelch-like 22 (Drosophila)##AK294682|KLHL22|84861|kelch-like 22 (Drosophila)##AK027266|KLHL22|84861|kelch-like 22 (Drosophila)##BC015923|KLHL22|84861|kelch-like 22 (Drosophila)##NM_032775|KLHL22|84861|kelch-like 22 (Drosophila)##AK315540|MED15|51586|mediator complex subunit 15##AK074268|MED15|51586|mediator complex subunit 15	0.0	0.017047	
chr4	71271691	71271840	reg1004684.p2	7.017	+	NM_021225 BC092438 S83198	-8120	+	NM_006685 AK130485 BC094707 D29833 BC015327	-22939	+	AK312075 NM_012390 BC140927 BC144529	-45254	+	NM_001145006	24443	+	NM_001145007	65909	+	NM_152291 AK093828 AK312855 BX647190 BC025688 L13283	66120	+	NM_021225|PROL1|58503|proline rich, lacrimal 1##BC092438|PROL1|58503|proline rich, lacrimal 1##S83198|PROL1|58503|proline rich, lacrimal 1##NM_006685|SMR3B|10879|submaxillary gland androgen regulated protein 3B##BC094707|SMR3B|10879|submaxillary gland androgen regulated protein 3B##D29833|SMR3B|10879|submaxillary gland androgen regulated protein 3B##BC015327|SMR3B|10879|submaxillary gland androgen regulated protein 3B##AK312075|SMR3A|26952|submaxillary gland androgen regulated protein 3A##NM_012390|SMR3A|26952|submaxillary gland androgen regulated protein 3A##BC140927|SMR3A|26952|submaxillary gland androgen regulated protein 3A##BC144529|SMR3B|10879|submaxillary gland androgen regulated protein 3B##NM_001145006|MUC7|4589|mucin 7, secreted##NM_001145007|MUC7|4589|mucin 7, secreted##NM_152291|MUC7|4589|mucin 7, secreted##AK093828|MUC7|4589|mucin 7, secreted##AK312855|MUC7|4589|mucin 7, secreted##BX647190|MUC7|4589|mucin 7, secreted##BC025688|MUC7|4589|mucin 7, secreted##L13283|MUC7|4589|mucin 7, secreted	0.0	0.016228	
chr11	45957234	45957414	reg1005027.p1	7.016	+	TSC_hg19_v1_chr11_+_45944226 BC037291	-13108	+	AK055829 AK096021 NM_152312	-14141	+	TSC_hg19_v1_chr11_-_45939595 AF118240 NM_004813 NM_057174	-17704	-	TSC_hg19_v1_chr11_-_46142986 AK023258 NM_001101802 NM_016621	185673	-	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	341881	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	342236	+	BC037291|GYLTL1B|120071|glycosyltransferase-like 1B##AK055829|GYLTL1B|120071|glycosyltransferase-like 1B##AK096021|GYLTL1B|120071|glycosyltransferase-like 1B##NM_152312|GYLTL1B|120071|glycosyltransferase-like 1B##AF118240|PEX16|9409|peroxisomal biogenesis factor 16##NM_004813|PEX16|9409|peroxisomal biogenesis factor 16##NM_057174|PEX16|9409|peroxisomal biogenesis factor 16##AK023258|PHF21A|51317|PHD finger protein 21A##NM_001101802|PHF21A|51317|PHD finger protein 21A##NM_016621|PHF21A|51317|PHD finger protein 21A##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1	0.999278	0.0	
chr3	169489743	169489923	reg1002573.p1	7.016	+	BC007289 AK055346 NM_032487	-2191	-	BC128029 TSC_hg19_v1_chr3_-_169482848	-6985	-	BC069498 GQ352634 U43292 AK304098 NM_001205194 NM_004991	-108344	-	TSC_hg19_v1_chr3_+_169490577 AK092022	763	+	BX648128 NM_001185118 NM_018657	1019	+	AK312527 BC020610 TSC_hg19_v1_chr3_+_169491186 AK304281 AK021646 AK307916 AF076249 AF155508 AF148848 BC033620	1363	+	BC007289|ARPM1|84517|actin related protein M1##AK055346|ARPM1|84517|actin related protein M1##NM_032487|ARPM1|84517|actin related protein M1##BC128029|TERC|7012|telomerase RNA component##BC069498|MECOM|2122|MDS1 and EVI1 complex locus##GQ352634|MECOM|2122|MDS1 and EVI1 complex locus##U43292|MECOM|2122|MDS1 and EVI1 complex locus##AK304098|MECOM|2122|MDS1 and EVI1 complex locus##NM_001205194|MECOM|2122|MDS1 and EVI1 complex locus##NM_004991|MECOM|2122|MDS1 and EVI1 complex locus##AK092022|MYNN|55892|myoneurin##BX648128|MYNN|55892|myoneurin##NM_001185118|MYNN|55892|myoneurin##NM_018657|MYNN|55892|myoneurin##AK312527|MYNN|55892|myoneurin##BC020610|MYNN|55892|myoneurin##AK304281|MYNN|55892|myoneurin##AK021646|MYNN|55892|myoneurin##AK307916|MYNN|55892|myoneurin##AF076249|MYNN|55892|myoneurin##AF155508|MYNN|55892|myoneurin##AF148848|MYNN|55892|myoneurin##BC033620|MYNN|55892|myoneurin	1.603643	0.0	denovo_WM_7:76:0.394	denovo_WM_7:-77:0.551	denovo_WM_7:-78:0.223
chr15	55095415	55095575	reg1005784.p2	7.014	+	NM_001080534	-790395	+	AK096055 BX537884 NM_182758	-1043648	-	AB463985 BC140830 NM_004498 U96173 TSC_hg19_v1_chr15_-_53082301	-2013301	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	393597	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	393684	-	AF125393 NM_183234 U57094 U38654 NM_004580	467042	-	NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AK096055|WDR72|256764|WD repeat domain 72##BX537884|WDR72|256764|WD repeat domain 72##NM_182758|WDR72|256764|WD repeat domain 72##BC140830|ONECUT1|3175|one cut homeobox 1##NM_004498|ONECUT1|3175|one cut homeobox 1##U96173|ONECUT1|3175|one cut homeobox 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family	0.0	0.0	
chrX	13740315	13740453	reg1004726.p1	7.014	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	-33091	+	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	-33143	+	AK291271 AK315599 NM_152634 AK294465	-69118	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	12324	-	TSC_hg19_v1_chrX_+_13752866 NM_003611 AK290354 AK289677 BC012324 BC030787 BC062432 Y15164 Y16355	12450	+	AK225847 BC042830 TSC_hg19_v1_chrX_+_13752900	12516	+	AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2##NM_003611|OFD1|8481|oral-facial-digital syndrome 1##AK290354|OFD1|8481|oral-facial-digital syndrome 1##AK289677|OFD1|8481|oral-facial-digital syndrome 1##BC012324|OFD1|8481|oral-facial-digital syndrome 1##BC030787|OFD1|8481|oral-facial-digital syndrome 1##BC062432|OFD1|8481|oral-facial-digital syndrome 1##Y15164|OFD1|8481|oral-facial-digital syndrome 1##Y16355|OFD1|8481|oral-facial-digital syndrome 1##AK225847|OFD1|8481|oral-facial-digital syndrome 1##BC042830|OFD1|8481|oral-facial-digital syndrome 1	1.632474	0.0	denovo_WM_7:-32:0.450	denovo_WM_7:-47:0.275	denovo_WM_7:-48:0.371
chr16	48644607	48644787	reg1005038.p2	7.013	+	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	-581	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-225445	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-244906	-	AB527638 TSC_hg19_v1_chr16_-_49315397	670696	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	670803	-	M58583 TSC_hg19_v1_chr16_-_49315772 AK314276 NM_004352	671037	-	BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor##M58583|CBLN1|869|cerebellin 1 precursor##AK314276|CBLN1|869|cerebellin 1 precursor##NM_004352|CBLN1|869|cerebellin 1 precursor	1.989987	0.0	denovo_WM_7:82:0.512	denovo_WM_7:83:0.258	denovo_WM_7:97:0.296	denovo_WM_7:98:0.368	denovo_WM_7:99:0.272
chr4	38763238	38763346	reg1004762.p1	7.011	+	AF289565 TSC_hg19_v1_chr4_-_38666549	-96803	-	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	-97466	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-784275	+	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	21307	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	43127	-	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	95136	-	AF289565|FLJ13197|79667|uncharacterized FLJ13197##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6	0.996942	0.0	denovo_WM_7:-50:0.841
chr5	138062701	138062846	reg1004706.p1	7.010	+	NM_004134	-151456	-	AK222758 TSC_hg19_v1_chr5_-_137911101 BC000478 BC024034 AK297897 AK293990 L11066 AK315177	-151685	-	BC030634 CU674234 TSC_hg19_v1_chr5_-_137911029 AB463063 EU446981 AK297795 L15189	-151754	-	TSC_hg19_v1_chr5_+_138089107 NM_001903 AK296708 AK300439 D14705	26321	+	TSC_hg19_v1_chr5_+_138089137 AK094151 D13866 BC000385 AK304267	26358	+	AK309790 TSC_hg19_v1_chr5_-_138211025 AB007876 BC028172 AK291064 AK297332	148240	-	NM_004134|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK222758|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC000478|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC024034|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK297897|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK293990|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##L11066|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK315177|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC030634|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##EU446981|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK297795|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##L15189|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##NM_001903|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK296708|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK300439|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##D14705|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK094151|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##D13866|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##BC000385|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK304267|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK309790|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AB007876|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##BC028172|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK291064|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK297332|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa	0.988699	0.0	denovo_WM_7:34:0.532	denovo_WM_7:35:0.457
chr18	31801503	31801657	reg1005307.p2	7.009	+	AK296539 NM_001198549	-173014	-	AB051500 TSC_hg19_v1_chr18_+_31319257	-482374	+	NM_030632 AK131454	-643021	+	NM_001198547	853	-	AK297185 BC000313 TSC_hg19_v1_chr18_-_31803319	1663	-	AB017800 NM_001198546 NM_001198548 NM_003787	1934	-	AK296539|NOL4|8715|nucleolar protein 4##NM_001198549|NOL4|8715|nucleolar protein 4##AB051500|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_030632|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK131454|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_001198547|NOL4|8715|nucleolar protein 4##AK297185|NOL4|8715|nucleolar protein 4##BC000313|NOL4|8715|nucleolar protein 4##AB017800|NOL4|8715|nucleolar protein 4##NM_001198546|NOL4|8715|nucleolar protein 4##NM_001198548|NOL4|8715|nucleolar protein 4##NM_003787|NOL4|8715|nucleolar protein 4	0.993986	0.0	denovo_WM_7:-2:0.459	denovo_WM_7:-3:0.459
chr4	4092575	4092686	reg1005128.p1	7.009	+	BC044637 TSC_hg19_v1_chr4_-_3957162	-135475	-	J03853 NM_000683	-324335	+	TSC_hg19_v1_chr4_+_3768111 BC142625	-324512	+	BC130430 BC130432 NM_177998	135987	-	TSC_hg19_v1_chr4_-_4249951 BC007729 NM_032927 AK054701 AK295248 AK296007 BC091482	157318	-	TSC_hg19_v1_chr4_-_4291782 AL136750 NM_001145725	199137	-	BC044637|FAM86EP|348926|family with sequence similarity 86, member A pseudogene##J03853|ADRA2C|152|adrenergic, alpha-2C-, receptor##NM_000683|ADRA2C|152|adrenergic, alpha-2C-, receptor##BC142625|ADRA2C|152|adrenergic, alpha-2C-, receptor##BC130430|OTOP1|133060|otopetrin 1##BC130432|OTOP1|133060|otopetrin 1##NM_177998|OTOP1|133060|otopetrin 1##BC007729|TMEM128|85013|transmembrane protein 128##NM_032927|TMEM128|85013|transmembrane protein 128##AK295248|TMEM128|85013|transmembrane protein 128##BC091482|TMEM128|85013|transmembrane protein 128##AL136750|LYAR|55646|Ly1 antibody reactive homolog (mouse)##NM_001145725|LYAR|55646|Ly1 antibody reactive homolog (mouse)	0.994005	0.0	denovo_WM_7:53:0.305	denovo_WM_7:54:0.305	denovo_WM_7:55:0.305
chr11	57434424	57434604	reg1000004.p1	7.008	+	NM_001142597 NM_006831 TSC_hg19_v1_chr11_+_57425244 AK313007 AK300232 BC000446	-9284	+	BC029228 BC104781 BC112119 BC064995 AB098738 AK054775 AK124577 NM_145008	-17183	-	TSC_hg19_v1_chr11_-_57414981 BC111012	-19501	-	TSC_hg19_v1_chr11_+_57435327 AY894889	857	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	961	+	BC026967 TSC_hg19_v1_chr11_+_57435567	1054	+	NM_001142597|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##NM_006831|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK313007|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK300232|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC000446|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC029228|YPEL4|219539|yippee-like 4 (Drosophila)##BC104781|YPEL4|219539|yippee-like 4 (Drosophila)##BC112119|YPEL4|219539|yippee-like 4 (Drosophila)##BC064995|YPEL4|219539|yippee-like 4 (Drosophila)##AB098738|YPEL4|219539|yippee-like 4 (Drosophila)##AK054775|YPEL4|219539|yippee-like 4 (Drosophila)##AK124577|YPEL4|219539|yippee-like 4 (Drosophila)##NM_145008|YPEL4|219539|yippee-like 4 (Drosophila)##BC111012|YPEL4|219539|yippee-like 4 (Drosophila)##AY894889|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5##BC026967|ZDHHC5|25921|zinc finger, DHHC-type containing 5	0.0	0.0	
chr9	70650512	70650655	reg1003915.p4	7.008	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-160407	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-160433	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-160443	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	206309	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	267241	+	BC033073 NM_021965	321231	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	1.991915	0.0	denovo_WM_7:9:0.902	denovo_WM_7:25:0.771
chr7	73587534	73587680	reg1005385.p1	7.007	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-80090	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	-89273	+	TSC_hg19_v1_chr7_+_73498160 D26309	-89452	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	1034	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	1096	+	NM_014146 NM_032463 NM_032464	36479	+	NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2	0.99496	0.0	
chr8	102920540	102920718	reg1005237.p1	7.006	+	NM_032041	-117191	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-117429	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-117446	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	215894	-	NM_001040630	216505	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	330544	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	0.0	0.0	
chr20	40061673	40061802	reg1004800.p1	7.004	+	AB089149 NM_052846	-66240	-	TSC_hg19_v1_chr20_+_39969434 BX647082 NM_022896 BC140806 BC144598	-92222	+	TSC_hg19_v1_chr20_-_39946149 AB007855	-115522	-	TSC_hg19_v1_chr20_-_40247013 BC039860 BC040016 AK296955 BC012516 AY034072 NM_032221	185324	-	AB006621 BC153300 TSC_hg19_v1_chr20_-_41818547 AF043644 NM_007050 NM_133170	1756773	-	TSC_hg19_v1_chr20_+_42086514 NM_006275	2024755	+	AB089149|EMILIN3|90187|elastin microfibril interfacer 3##NM_052846|EMILIN3|90187|elastin microfibril interfacer 3##BX647082|LPIN3|64900|lipin 3##NM_022896|LPIN3|64900|lipin 3##BC140806|LPIN3|64900|lipin 3##BC144598|LPIN3|64900|lipin 3##AB007855|ZHX3|23051|zinc fingers and homeoboxes 3##BC039860|CHD6|84181|chromodomain helicase DNA binding protein 6##BC040016|CHD6|84181|chromodomain helicase DNA binding protein 6##AK296955|CHD6|84181|chromodomain helicase DNA binding protein 6##BC012516|CHD6|84181|chromodomain helicase DNA binding protein 6##AY034072|CHD6|84181|chromodomain helicase DNA binding protein 6##NM_032221|CHD6|84181|chromodomain helicase DNA binding protein 6##AB006621|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##BC153300|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##AF043644|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_007050|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_133170|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_006275|SRSF6|6431|serine/arginine-rich splicing factor 6	0.994204	0.0	denovo_WM_7:-10:0.635
chr7	93457701	93457881	reg1005609.p1	7.004	+	AB022177 AK313996 NM_001164737 NM_001742	-253753	-	AB022178 NM_001164738	-268670	-	BC017888 NM_017667 NM_024553 TSC_hg19_v1_chr7_+_92861678 AK126478 AL833112 AK055965 AK299582 AB100163 BC108708 BC132740 BC132742 AB058764 BC152424 CU676100 AB385511	-596065	+	CU675117 DQ892533 DQ895744 L27624 AY691946 D29992 AK075427 AK024817 AK075425 AK092499 AK129833 AK313260 BC005330 NM_006528 TSC_hg19_v1_chr7_-_93520066	62238	-	BC029367 NM_021955	78028	+	NM_004126 BC009709	93265	+	AB022177|CALCR|799|calcitonin receptor##AK313996|CALCR|799|calcitonin receptor##NM_001164737|CALCR|799|calcitonin receptor##NM_001742|CALCR|799|calcitonin receptor##AB022178|CALCR|799|calcitonin receptor##NM_001164738|CALCR|799|calcitonin receptor##BC017888|CCDC132|55610|coiled-coil domain containing 132##NM_017667|CCDC132|55610|coiled-coil domain containing 132##NM_024553|CCDC132|55610|coiled-coil domain containing 132##AK126478|CCDC132|55610|coiled-coil domain containing 132##AL833112|CCDC132|55610|coiled-coil domain containing 132##AK055965|CCDC132|55610|coiled-coil domain containing 132##AK299582|CCDC132|55610|coiled-coil domain containing 132##AB100163|CCDC132|55610|coiled-coil domain containing 132##BC108708|CCDC132|55610|coiled-coil domain containing 132##BC132740|CCDC132|55610|coiled-coil domain containing 132##BC132742|CCDC132|55610|coiled-coil domain containing 132##AB058764|CCDC132|55610|coiled-coil domain containing 132##BC152424|CCDC132|55610|coiled-coil domain containing 132##DQ892533|TFPI2|7980|tissue factor pathway inhibitor 2##DQ895744|TFPI2|7980|tissue factor pathway inhibitor 2##L27624|TFPI2|7980|tissue factor pathway inhibitor 2##AY691946|TFPI2|7980|tissue factor pathway inhibitor 2##D29992|TFPI2|7980|tissue factor pathway inhibitor 2##AK075427|TFPI2|7980|tissue factor pathway inhibitor 2##AK024817|TFPI2|7980|tissue factor pathway inhibitor 2##AK075425|TFPI2|7980|tissue factor pathway inhibitor 2##AK092499|TFPI2|7980|tissue factor pathway inhibitor 2##AK129833|TFPI2|7980|tissue factor pathway inhibitor 2##AK313260|TFPI2|7980|tissue factor pathway inhibitor 2##BC005330|TFPI2|7980|tissue factor pathway inhibitor 2##NM_006528|TFPI2|7980|tissue factor pathway inhibitor 2##BC029367|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##NM_021955|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##NM_004126|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC009709|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11	0.995115	0.0	denovo_WM_7:65:0.970
chr12	2977308	2977456	reg1005294.p2	7.003	+	AB528149 AM393084 BC131562 AL136557 AK300944 BC036063 AK098063 NM_031474	-33198	-	NM_018463 TSC_hg19_v1_chr12_+_2921842 AK130319 AK297189 AK291110 AK300905 AK027483 BC006552 BC013399 DQ892711 DQ895963 CU675449 AY599883	-55526	+	TSC_hg19_v1_chr12_+_2904310 AB385011 CU674888 DQ893668 DQ895800	-73080	+	TSC_hg19_v1_chr12_-_2986289 U83113 U74613 U74612 AK313845 BC006192 BC006529 AK291206	8814	-	TSC_hg19_v1_chr12_+_2986385 NM_001252499 NM_001252500 AB073599 AK021945 AK299990 AK304613 AK315364 BC005106	9007	+	TSC_hg19_v1_chr12_-_2986314 NM_001243088 NM_001243089 NM_021953 NM_202002 NM_202003	9075	-	AM393084|NRIP2|83714|nuclear receptor interacting protein 2##BC131562|NRIP2|83714|nuclear receptor interacting protein 2##AL136557|NRIP2|83714|nuclear receptor interacting protein 2##AK300944|NRIP2|83714|nuclear receptor interacting protein 2##BC036063|NRIP2|83714|nuclear receptor interacting protein 2##AK098063|NRIP2|83714|nuclear receptor interacting protein 2##NM_031474|NRIP2|83714|nuclear receptor interacting protein 2##NM_018463|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK130319|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK297189|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK291110|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK300905|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK027483|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##BC006552|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##BC013399|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ892711|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ895963|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AY599883|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ893668|FKBP4|2288|FK506 binding protein 4, 59kDa##DQ895800|FKBP4|2288|FK506 binding protein 4, 59kDa##U83113|FOXM1|2305|forkhead box M1##U74613|FOXM1|2305|forkhead box M1##U74612|FOXM1|2305|forkhead box M1##AK313845|FOXM1|2305|forkhead box M1##BC006192|FOXM1|2305|forkhead box M1##BC006529|FOXM1|2305|forkhead box M1##AK291206|FOXM1|2305|forkhead box M1##NM_001252499|C12orf32|83695|chromosome 12 open reading frame 32##NM_001252500|C12orf32|83695|chromosome 12 open reading frame 32##AB073599|C12orf32|83695|chromosome 12 open reading frame 32##AK021945|C12orf32|83695|chromosome 12 open reading frame 32##AK304613|C12orf32|83695|chromosome 12 open reading frame 32##AK315364|C12orf32|83695|chromosome 12 open reading frame 32##BC005106|C12orf32|83695|chromosome 12 open reading frame 32##NM_001243088|FOXM1|2305|forkhead box M1##NM_001243089|FOXM1|2305|forkhead box M1##NM_021953|FOXM1|2305|forkhead box M1##NM_202002|FOXM1|2305|forkhead box M1##NM_202003|FOXM1|2305|forkhead box M1	0.020825	0.0	
chr17	1470198	1470341	reg1005012.p2	7.003	+	BC082976 TSC_hg19_v1_chr17_-_1466077 BC027177 D30036 M73704 BC045108 BC068538 NM_006224	-4187	-	TSC_hg19_v1_chr17_-_1420177 AK312844 NM_001135642 NM_016532 NM_130766	-50090	-	TSC_hg19_v1_chr17_-_1419907 DQ892815 DQ896061 AB529166 AK297955 AK303907 AK307293 AB036829 AB036830 AK312585 BC004362	-50303	-	AF289592 TSC_hg19_v1_chr17_-_1531711 AB120364	61371	-	TSC_hg19_v1_chr17_-_1532115 BC027923 NM_152346 BC071859	61875	-	D63483 AK310174 AB052950 AB052949 AB052947 D86864 TSC_hg19_v1_chr17_-_1549050 AK291810 AB052948 BC039735 NM_003693 NM_145350 NM_145352 AK298737	78768	-	BC082976|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC027177|PITPNA|5306|phosphatidylinositol transfer protein, alpha##D30036|PITPNA|5306|phosphatidylinositol transfer protein, alpha##M73704|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC045108|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC068538|PITPNA|5306|phosphatidylinositol transfer protein, alpha##NM_006224|PITPNA|5306|phosphatidylinositol transfer protein, alpha##AK312844|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_001135642|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_016532|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_130766|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ892815|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ896061|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK297955|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK303907|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK307293|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036829|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036830|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK312585|INPP5K|51763|inositol polyphosphate-5-phosphatase K##BC004362|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AF289592|SLC43A2|124935|solute carrier family 43, member 2##AB120364|SLC43A2|124935|solute carrier family 43, member 2##BC027923|SLC43A2|124935|solute carrier family 43, member 2##NM_152346|SLC43A2|124935|solute carrier family 43, member 2##BC071859|SLC43A2|124935|solute carrier family 43, member 2##D63483|SCARF1|8578|scavenger receptor class F, member 1##AK310174|SCARF1|8578|scavenger receptor class F, member 1##AB052950|SCARF1|8578|scavenger receptor class F, member 1##AB052949|SCARF1|8578|scavenger receptor class F, member 1##AB052947|SCARF1|8578|scavenger receptor class F, member 1##D86864|SCARF1|8578|scavenger receptor class F, member 1##AK291810|SCARF1|8578|scavenger receptor class F, member 1##AB052948|SCARF1|8578|scavenger receptor class F, member 1##BC039735|SCARF1|8578|scavenger receptor class F, member 1##NM_003693|SCARF1|8578|scavenger receptor class F, member 1##NM_145350|SCARF1|8578|scavenger receptor class F, member 1##NM_145352|SCARF1|8578|scavenger receptor class F, member 1##AK298737|SCARF1|8578|scavenger receptor class F, member 1	0.981591	0.0	denovo_WM_7:32:0.310	denovo_WM_7:33:0.310	denovo_WM_7:34:0.310
chr1	69098898	69099009	reg1005928.p2	7.002	+	TSC_hg19_v1_chr1_-_68962766 AK225735 BC003511 AB281187 AB281274 AK000361 AK299324 NM_001114120 NM_017779	-136172	-	CU688044 BC065304 BC011743 BC035506 BC041580 TSC_hg19_v1_chr1_-_68962723	-136252	-	AK289925 BC075035 BC075036 NM_000329 U18991	-183317	-	TSC_hg19_v1_chr1_+_70032819 BC080568	933885	+	AK294206 TSC_hg19_v1_chr1_+_70033988	935018	+	TSC_hg19_v1_chr1_+_70034033 AF498274	935127	+	AK225735|DEPDC1|55635|DEP domain containing 1##BC003511|DEPDC1|55635|DEP domain containing 1##AB281187|DEPDC1|55635|DEP domain containing 1##AB281274|DEPDC1|55635|DEP domain containing 1##AK000361|DEPDC1|55635|DEP domain containing 1##AK299324|DEPDC1|55635|DEP domain containing 1##NM_001114120|DEPDC1|55635|DEP domain containing 1##NM_017779|DEPDC1|55635|DEP domain containing 1##BC065304|DEPDC1|55635|DEP domain containing 1##BC011743|DEPDC1|55635|DEP domain containing 1##BC035506|DEPDC1|55635|DEP domain containing 1##BC041580|DEPDC1|55635|DEP domain containing 1##AK289925|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##BC075035|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##BC075036|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##NM_000329|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##U18991|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##AF498274|LRRC7|57554|leucine rich repeat containing 7	0.468484	0.0	denovo_WM_7:-28:0.443
chr3	127494372	127494499	reg1005109.p1	7.002	+	TSC_hg19_v1_chr3_+_127391798 NM_032548 NM_172027 BC011858 AK098738 AK130594 AB053324 AB053325 AB053326 AK315148 AF297986 CU680084	-102618	+	TSC_hg19_v1_chr3_+_127348020 BC019330 AY359096 NM_015720 BC052585 AF219137	-146403	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	-177151	+	CR456835 TSC_hg19_v1_chr3_-_127541359 AK304844 BC000551 U67963 AK315529 BC006230 NM_007283	46995	-	TSC_hg19_v1_chr3_-_127542029 AK091314 AK310874 NM_001003794	47707	-	AK307108 BX537865 TSC_hg19_v1_chr3_+_127634319	139883	+	NM_032548|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##NM_172027|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC011858|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK098738|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK130594|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053324|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053325|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053326|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK315148|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AF297986|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC019330|PODXL2|50512|podocalyxin-like 2##AY359096|PODXL2|50512|podocalyxin-like 2##NM_015720|PODXL2|50512|podocalyxin-like 2##BC052585|PODXL2|50512|podocalyxin-like 2##AF219137|PODXL2|50512|podocalyxin-like 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2##CR456835|MGLL|11343|monoglyceride lipase##AK304844|MGLL|11343|monoglyceride lipase##BC000551|MGLL|11343|monoglyceride lipase##U67963|MGLL|11343|monoglyceride lipase##AK315529|MGLL|11343|monoglyceride lipase##BC006230|MGLL|11343|monoglyceride lipase##NM_007283|MGLL|11343|monoglyceride lipase##AK091314|MGLL|11343|monoglyceride lipase##AK310874|MGLL|11343|monoglyceride lipase##NM_001003794|MGLL|11343|monoglyceride lipase##AK307108|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12##BX537865|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	0.02895	0.0	
chr12	32742587	32742705	reg1004723.p2	7.001	+	TSC_hg19_v1_chr12_+_32687260 AK303334	-55383	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	-87607	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	-482473	+	TSC_hg19_v1_chr12_+_32832187 AK302565 NM_005690 NM_012062 NM_012063 AK311606	89511	+	TSC_hg19_v1_chr12_+_32832234 AK299926 AF000430 AK291094 AK293290 AK294533 AK298568 BC107763 AB209070 AB006965 BC024590	89591	+	TSC_hg19_v1_chr12_+_32832277 AF061795 AF151685 AB384831 CU692924 DQ891544 DQ894732 BC000136	89677	+	AK303334|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK302565|DNM1L|10059|dynamin 1-like##NM_005690|DNM1L|10059|dynamin 1-like##NM_012062|DNM1L|10059|dynamin 1-like##NM_012063|DNM1L|10059|dynamin 1-like##AK311606|DNM1L|10059|dynamin 1-like##AK299926|DNM1L|10059|dynamin 1-like##AF000430|DNM1L|10059|dynamin 1-like##AK291094|DNM1L|10059|dynamin 1-like##AK293290|DNM1L|10059|dynamin 1-like##AK294533|DNM1L|10059|dynamin 1-like##AK298568|DNM1L|10059|dynamin 1-like##BC107763|DNM1L|10059|dynamin 1-like##AB209070|DNM1L|10059|dynamin 1-like##AB006965|DNM1L|10059|dynamin 1-like##BC024590|DNM1L|10059|dynamin 1-like##AF061795|DNM1L|10059|dynamin 1-like##AF151685|DNM1L|10059|dynamin 1-like##DQ891544|DNM1L|10059|dynamin 1-like##DQ894732|DNM1L|10059|dynamin 1-like	0.0	0.0	
chr3	15398347	15398455	reg1005143.p2	7.001	+	BC006169 NM_001018009	-15514	-	TSC_hg19_v1_chr3_-_15374094 AL117422 AK313167 NM_004844	-24304	-	BC023195 DQ892875 EU176725 AB005047 AB590534 TSC_hg19_v1_chr3_-_15374053 BC010123	-24460	-	TSC_hg19_v1_chr3_-_15469037 BC022400 AK057791 NM_152396 AK293370	70617	-	TSC_hg19_v1_chr3_+_15469073 NM_033083 AK312330 AK304697 BC041329 AF272973 CU691982	70767	+	AK128401 NM_080538	141977	-	BC006169|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##NM_001018009|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AL117422|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AK313167|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##NM_004844|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC023195|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##DQ892875|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##EU176725|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AB005047|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC010123|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC022400|METTL6|131965|methyltransferase like 6##AK057791|METTL6|131965|methyltransferase like 6##NM_152396|METTL6|131965|methyltransferase like 6##AK293370|METTL6|131965|methyltransferase like 6##NM_033083|EAF1|85403|ELL associated factor 1##AK312330|EAF1|85403|ELL associated factor 1##AK304697|EAF1|85403|ELL associated factor 1##BC041329|EAF1|85403|ELL associated factor 1##AF272973|EAF1|85403|ELL associated factor 1##AK128401|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase##NM_080538|COLQ|8292|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	0.993941	0.0	denovo_WM_7:38:0.384	denovo_WM_7:39:0.248	denovo_WM_7:40:0.205
chr2	201984756	201984936	reg1003695.p2	7.000	+	TSC_hg19_v1_chr2_+_201983419 AK289913 AK315208	-1374	+	AF015450 NM_001127183 AK308767 TSC_hg19_v1_chr2_+_201983395	-1515	+	AF009616 TSC_hg19_v1_chr2_+_201981056 AF010127 U97074 AK315924 BC001602 AB209600	-3805	+	NM_001202518 AK304585 AF041462	12876	+	AF041459 NM_001202515	20151	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	62774	+	AK289913|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315208|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF015450|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001127183|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK308767|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF009616|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF010127|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##U97074|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315924|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##BC001602|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AB209600|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202518|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK304585|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041462|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041459|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202515|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	2.104872	0.0	denovo_WM_7:73:0.975	denovo_WM_7:-87:0.273
chr6	99932474	99932654	reg1002255.p2	7.000	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	-59397	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	-59750	+	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	-83273	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	30705	-	TSC_hg19_v1_chr6_-_99963309 BC005991	30746	-	TSC_hg19_v1_chr6_+_99968921 BX647075 NM_001195131	36335	+	BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45##BC005991|USP45|85015|ubiquitin specific peptidase 45##BX647075|LOC100130890|100130890|uncharacterized LOC100130890##NM_001195131|LOC100130890|100130890|uncharacterized LOC100130890	0.0	0.0	
chr9	117129193	117129290	reg1004746.p2	7.000	+	BC042202 TSC_hg19_v1_chr9_-_117111294	-17952	-	NM_000608 AK312226 BC015964 BC056239 AK303760 CR456930 CU677539	-37115	+	NM_000607 X02544 AK316207 AK312035 BC026238 BC007032 BC104818 BC104820 BC143313 BC143314 M13692 AB463987 BT019790 CU693168	-43884	+	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	21049	-	AY703040 BC055285 NM_030767	27443	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	31510	-	BC042202|AKNA|80709|AT-hook transcription factor##NM_000608|ORM2|5005|orosomucoid 2##AK312226|ORM2|5005|orosomucoid 2##BC015964|ORM2|5005|orosomucoid 2##BC056239|ORM2|5005|orosomucoid 2##AK303760|ORM2|5005|orosomucoid 2##CR456930|ORM2|5005|orosomucoid 2##NM_000607|ORM1|5004|orosomucoid 1##X02544|ORM1|5004|orosomucoid 1##AK316207|ORM1|5004|orosomucoid 1##AK312035|ORM1|5004|orosomucoid 1##BC026238|ORM1|5004|orosomucoid 1##BC007032|ORM1|5004|orosomucoid 1##BC104818|ORM1|5004|orosomucoid 1##BC104820|ORM1|5004|orosomucoid 1##BC143313|ORM1|5004|orosomucoid 1##BC143314|ORM1|5004|orosomucoid 1##M13692|ORM1|5004|orosomucoid 1##BT019790|ORM1|5004|orosomucoid 1##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor	0.667646	0.0	denovo_WM_7:-21:0.572
chr7	24852087	24852218	reg1006235.p1	6.998	+	TSC_hg19_v1_chr7_-_24797557 NM_001127454 NM_004403	-54555	-	TSC_hg19_v1_chr7_-_24797316 BC125065 BC125066 AF073308	-54813	-	TSC_hg19_v1_chr7_-_24797055 AK290775 AK314402 NM_001127453	-55085	-	AF323727 AY008372 TSC_hg19_v1_chr7_-_25019775 AF392444 BC017731 NM_015550 NM_145320 NM_145321 NM_145322 AB014604	167592	-	AL713681 BC005299 BC008475 BC008477 BC009578 BC009579 BC009582 BC009587 BC009602 BC014359 BC014361 BC015130 BC016006 BC021994 BC022330 BC067222 BC068464 BC070156 BC071761 TSC_hg19_v1_chr7_-_25164884 BC070346 BC009607	312725	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	312788	-	NM_001127454|DFNA5|1687|deafness, autosomal dominant 5##NM_004403|DFNA5|1687|deafness, autosomal dominant 5##BC125065|DFNA5|1687|deafness, autosomal dominant 5##BC125066|DFNA5|1687|deafness, autosomal dominant 5##AF073308|DFNA5|1687|deafness, autosomal dominant 5##AK290775|DFNA5|1687|deafness, autosomal dominant 5##AK314402|DFNA5|1687|deafness, autosomal dominant 5##NM_001127453|DFNA5|1687|deafness, autosomal dominant 5##AF323727|OSBPL3|26031|oxysterol binding protein-like 3##AY008372|OSBPL3|26031|oxysterol binding protein-like 3##AF392444|OSBPL3|26031|oxysterol binding protein-like 3##BC017731|OSBPL3|26031|oxysterol binding protein-like 3##NM_015550|OSBPL3|26031|oxysterol binding protein-like 3##NM_145320|OSBPL3|26031|oxysterol binding protein-like 3##NM_145321|OSBPL3|26031|oxysterol binding protein-like 3##NM_145322|OSBPL3|26031|oxysterol binding protein-like 3##AB014604|OSBPL3|26031|oxysterol binding protein-like 3##AL713681|CYCS|54205|cytochrome c, somatic##BC005299|CYCS|54205|cytochrome c, somatic##BC008475|CYCS|54205|cytochrome c, somatic##BC008477|CYCS|54205|cytochrome c, somatic##BC009578|CYCS|54205|cytochrome c, somatic##BC009579|CYCS|54205|cytochrome c, somatic##BC009582|CYCS|54205|cytochrome c, somatic##BC009587|CYCS|54205|cytochrome c, somatic##BC009602|CYCS|54205|cytochrome c, somatic##BC014359|CYCS|54205|cytochrome c, somatic##BC014361|CYCS|54205|cytochrome c, somatic##BC015130|CYCS|54205|cytochrome c, somatic##BC016006|CYCS|54205|cytochrome c, somatic##BC021994|CYCS|54205|cytochrome c, somatic##BC022330|CYCS|54205|cytochrome c, somatic##BC067222|CYCS|54205|cytochrome c, somatic##BC068464|CYCS|54205|cytochrome c, somatic##BC070156|CYCS|54205|cytochrome c, somatic##BC071761|CYCS|54205|cytochrome c, somatic##BC070346|CYCS|54205|cytochrome c, somatic##BC009607|CYCS|54205|cytochrome c, somatic##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic	0.875717	0.951472	CTCF.p2:-9:0.951	denovo_WM_7:28:0.234	denovo_WM_7:35:0.370
chr2	61108013	61108157	reg1005543.p1	6.997	+	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	-124601	+	AF080216 TSC_hg19_v1_chr2_-_60780784	-327307	-	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	-327563	-	TSC_hg19_v1_chr2_+_61108702 AK303926	620	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	652	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	702	+	NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)	0.0	0.359178	CTCF.p2:61:0.359
chr3	128393808	128393953	reg1004500.p1	6.997	+	TSC_hg19_v1_chr3_-_128369724 NM_002950	-24142	-	TSC_hg19_v1_chr3_-_128369662 AK297941 AK312369 AK296905 CR749284 BC010839 AK223595	-24198	-	BC007995 TSC_hg19_v1_chr3_-_128369648 CR456742 AB527671 CU679817	-24294	-	AK297513 TSC_hg19_v1_chr3_-_128399968	6065	-	NM_004637 TSC_hg19_v1_chr3_+_128444978	51102	+	TSC_hg19_v1_chr3_+_128445025 AK094449	51144	+	NM_002950|RPN1|6184|ribophorin I##AK297941|RPN1|6184|ribophorin I##AK312369|RPN1|6184|ribophorin I##AK296905|RPN1|6184|ribophorin I##CR749284|RPN1|6184|ribophorin I##BC010839|RPN1|6184|ribophorin I##AK223595|RPN1|6184|ribophorin I##BC007995|RPN1|6184|ribophorin I##CR456742|RPN1|6184|ribophorin I##AK297513|RPN1|6184|ribophorin I##NM_004637|RAB7A|7879|RAB7A, member RAS oncogene family##AK094449|RAB7A|7879|RAB7A, member RAS oncogene family	1.137382	0.0	
chr11	62200851	62200980	reg1004565.p2	6.996	+	AK312165 NM_003357 BC004481 U01101 DQ893375 DQ896769 X13197 AB590371 CR541780	-14379	+	TSC_hg19_v1_chr11_+_62104919 AK313069 AK091894 AX747239 AK297158 AK090908 AX746674 AK309845 BC064963 BC093070 AF411076 BC021295 AK225802	-95967	+	NM_001083926 NM_025080 TSC_hg19_v1_chr11_+_62104878	-96090	+	TSC_hg19_v1_chr11_-_62314221 BC012477 BC000926 AK095346	113321	-	TSC_hg19_v1_chr11_-_62314314 AK300376 BC128460 NM_001620 NM_024060	113399	-	DQ185040 BT006677 CR407625 BC006509 BC006520 CU674184 CU677463 CU680700 BC000384 DQ891103 DQ894284 Z11531 AB527934 BC009865 BC015813 BC018857 BC018853 BC028179 TSC_hg19_v1_chr11_-_62341334 BC013918 AK092787 AK299876 AY542307 BC067738 AK129569 AK129618 AK300729 X63526 AK130026 AK300686 BC031012	140409	-	AK312165|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##NM_003357|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC004481|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##U01101|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ893375|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ896769|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##X13197|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##CR541780|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##AK313069|ASRGL1|80150|asparaginase like 1##AK091894|ASRGL1|80150|asparaginase like 1##AK297158|ASRGL1|80150|asparaginase like 1##AK090908|ASRGL1|80150|asparaginase like 1##AK309845|ASRGL1|80150|asparaginase like 1##BC064963|ASRGL1|80150|asparaginase like 1##BC093070|ASRGL1|80150|asparaginase like 1##AF411076|ASRGL1|80150|asparaginase like 1##BC021295|ASRGL1|80150|asparaginase like 1##AK225802|ASRGL1|80150|asparaginase like 1##NM_001083926|ASRGL1|80150|asparaginase like 1##NM_025080|ASRGL1|80150|asparaginase like 1##BC012477|AHNAK|79026|AHNAK nucleoprotein##BC000926|AHNAK|79026|AHNAK nucleoprotein##AK095346|AHNAK|79026|AHNAK nucleoprotein##AK300376|AHNAK|79026|AHNAK nucleoprotein##BC128460|AHNAK|79026|AHNAK nucleoprotein##NM_001620|AHNAK|79026|AHNAK nucleoprotein##NM_024060|AHNAK|79026|AHNAK nucleoprotein##DQ185040|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BT006677|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##CR407625|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006509|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006520|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC000384|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ891103|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ894284|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##Z11531|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC009865|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC015813|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018857|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018853|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC028179|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC013918|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK092787|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK299876|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AY542307|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC067738|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129569|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129618|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300729|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##X63526|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK130026|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300686|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC031012|EEF1G|1937|eukaryotic translation elongation factor 1 gamma	0.994874	0.0	denovo_WM_7:-4:0.909
chr22	38791374	38791518	reg1005249.p1	6.995	+	AB024597 NM_001894	-77358	-	TSC_hg19_v1_chr22_-_38713439 NM_152221	-78032	-	BC006490 AB091043 TSC_hg19_v1_chr22_-_38713340 AK223498	-78155	-	TSC_hg19_v1_chr22_-_38794883 AK307225 AK310303	3422	-	NM_004981 S72503 U07364	48586	-	CR456507 BC039618 U24056 NM_152868 BC032562	59662	-	AB024597|CSNK1E|1454|casein kinase 1, epsilon##NM_001894|CSNK1E|1454|casein kinase 1, epsilon##NM_152221|CSNK1E|1454|casein kinase 1, epsilon##BC006490|CSNK1E|1454|casein kinase 1, epsilon##AB091043|CSNK1E|1454|casein kinase 1, epsilon##AK223498|CSNK1E|1454|casein kinase 1, epsilon##AK307225|LOC400927|400927|TPTE and PTEN homologous inositol lipid phosphatase pseudogene##NM_004981|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##S72503|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U07364|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##CR456507|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC039618|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U24056|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##NM_152868|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC032562|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4	0.0	0.0	
chr13	32502330	32502475	reg1005640.p2	6.994	+	TSC_hg19_v1_chr13_+_32420857 BC021729	-81500	+	NM_001166058 NM_130806 AF453828 AB527208 AY899851	-188689	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	-728192	+	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	103039	+	BC146956 BC146965 NM_001136571	383687	-	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	387215	+	BC021729|EEF1DP3|196549|eukaryotic translation elongation factor 1 delta pseudogene 3##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset	1.985382	0.0	
chr2	166060399	166060533	reg1000444.p1	6.994	+	AK293998 AK097141 NM_001199148 NM_173512	-248452	-	AK225849 BC006264 TSC_hg19_v1_chr2_-_165698685 AK294937	-361844	-	TSC_hg19_v1_chr2_-_165698334 AK002054	-362139	-	AF225986 AF225987 AK299757 TSC_hg19_v1_chr2_-_166060561 NM_001081676 NM_001081677 NM_006922 DQ993536	111	-	AK289656 NM_001040142 DQ993531 BC029489 BC047398 BC048417	35466	+	NM_021007	89874	+	AK293998|SLC38A11|151258|solute carrier family 38, member 11##AK097141|SLC38A11|151258|solute carrier family 38, member 11##NM_001199148|SLC38A11|151258|solute carrier family 38, member 11##NM_173512|SLC38A11|151258|solute carrier family 38, member 11##AK225849|COBLL1|22837|COBL-like 1##BC006264|COBLL1|22837|COBL-like 1##AK294937|COBLL1|22837|COBL-like 1##AK002054|COBLL1|22837|COBL-like 1##AF225986|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AF225987|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AK299757|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001081676|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_001081677|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##NM_006922|SCN3A|6328|sodium channel, voltage-gated, type III, alpha subunit##AK289656|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##NM_001040142|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##DQ993531|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC029489|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC047398|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##BC048417|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##NM_021007|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit	1.908562	0.0	denovo_WM_7:18:0.820
chr2	175462543	175462691	reg1005161.p1	6.993	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	-136	-	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-110820	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-202059	+	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	36680	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	85137	-	TSC_hg19_v1_chr2_+_175584527 DQ895855	121961	+	BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1##DQ895855|H3F3A|3020|H3 histone, family 3A	0.058019	0.0	
chr16	28500156	28500287	reg1005964.p2	6.991	+	BC157842 AK292155 NM_001199142	-62503	-	AK055366 AK299421 AK303790 AK304500 TSC_hg19_v1_chr16_-_28415162 AK301233 AK301183 NM_001099661 BC107692 NM_001037808 NM_003752	-85064	-	DQ891632 DQ894822 AB527254 BC157849 BC071705 AK000739 AK293264 AY762099 TSC_hg19_v1_chr16_-_28415133 BC000533 BC001571	-85180	-	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	3019	-	NM_001042432	3401	-	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	5741	+	BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK055366|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK299421|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK303790|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK304500|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301233|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301183|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001099661|EIF3CL|728689|eukaryotic translation initiation factor 3, subunit C-like##BC107692|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001037808|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_003752|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ891632|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ894822|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC157849|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC071705|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK000739|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK293264|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AY762099|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC000533|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC001571|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor	0.189226	0.023775	
chr5	157156976	157157126	reg1004901.p2	6.991	+	NM_001145132	-58491	+	BC035142 AK055284 TSC_hg19_v1_chr5_-_157098473 AK302162	-58586	-	AB022083 AB022441 AK308329 AK225861 BC033492 NM_007017 NM_178424	-77652	-	AY463216 NM_017872 TSC_hg19_v1_chr5_+_157158427 AK000553 AK223119 AK304590 BC023521 AL136669 AK021663 AB528251 AM392629 CR533503 BC001523 BC001852 CU674750	1377	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	13689	+	AK055297 TSC_hg19_v1_chr5_+_157184422	27329	+	NM_001145132|C5orf52|100190949|chromosome 5 open reading frame 52##AK302162|SOX30|11063|SRY (sex determining region Y)-box 30##AB022083|SOX30|11063|SRY (sex determining region Y)-box 30##AB022441|SOX30|11063|SRY (sex determining region Y)-box 30##AK308329|SOX30|11063|SRY (sex determining region Y)-box 30##BC033492|SOX30|11063|SRY (sex determining region Y)-box 30##NM_007017|SOX30|11063|SRY (sex determining region Y)-box 30##NM_178424|SOX30|11063|SRY (sex determining region Y)-box 30##AY463216|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##NM_017872|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK000553|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK223119|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK304590|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC023521|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AL136669|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK021663|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##CR533503|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC001523|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC001852|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated	0.188006	0.0	
chr6	143143634	143143795	reg1005789.p2	6.991	+	TSC_hg19_v1_chr6_+_142623443 BX640873	-520308	+	TSC_hg19_v1_chr6_+_142623145 BC075798 NM_001032394 NM_001032395 NM_020455 NM_198569 AF216967 AB183546 AB183547 AB183548 AB183549 AK307543 AK122617 BX648315	-520645	+	TSC_hg19_v1_chr6_+_142510627 BC013217	-633085	+	TSC_hg19_v1_chr6_-_143266314 CR936782 NM_006734	122614	-	TSC_hg19_v1_chr6_+_143382007 AK298533 AK222475 NM_016108	238281	+	BC009559 TSC_hg19_v1_chr6_+_143382031 AF153605 AK001347 BX640703	238322	+	BX640873|GPR126|57211|G protein-coupled receptor 126##BC075798|GPR126|57211|G protein-coupled receptor 126##NM_001032394|GPR126|57211|G protein-coupled receptor 126##NM_001032395|GPR126|57211|G protein-coupled receptor 126##NM_020455|GPR126|57211|G protein-coupled receptor 126##NM_198569|GPR126|57211|G protein-coupled receptor 126##AF216967|GPR126|57211|G protein-coupled receptor 126##AB183546|GPR126|57211|G protein-coupled receptor 126##AB183547|GPR126|57211|G protein-coupled receptor 126##AB183548|GPR126|57211|G protein-coupled receptor 126##AB183549|GPR126|57211|G protein-coupled receptor 126##AK307543|GPR126|57211|G protein-coupled receptor 126##AK122617|GPR126|57211|G protein-coupled receptor 126##BX648315|GPR126|57211|G protein-coupled receptor 126##BC013217|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##CR936782|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##NM_006734|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##AK298533|AIG1|51390|androgen-induced 1##AK222475|AIG1|51390|androgen-induced 1##NM_016108|AIG1|51390|androgen-induced 1##BC009559|AIG1|51390|androgen-induced 1##AF153605|AIG1|51390|androgen-induced 1##AK001347|AIG1|51390|androgen-induced 1##BX640703|AIG1|51390|androgen-induced 1	0.0	0.0	
chr10	106088844	106088985	reg1005692.p2	6.990	+	BC046194 NM_001191014 NM_001191015 BC023583 AK297522	-54010	+	AK300508 AK296266 TSC_hg19_v1_chr10_+_106034669 CU691188 AY191318	-54252	+	TSC_hg19_v1_chr10_+_106028947 AY209189 AY350731 AK291886	-59973	+	BC070108 NM_033397	4748	-	AB051541 TSC_hg19_v1_chr10_-_106098200 AK129877	9275	-	TSC_hg19_v1_chr10_+_106113521 BC036225 NM_001008723 BX641120 AK093227 AX748000 BC109126	24627	+	BC046194|GSTO2|119391|glutathione S-transferase omega 2##NM_001191014|GSTO2|119391|glutathione S-transferase omega 2##NM_001191015|GSTO2|119391|glutathione S-transferase omega 2##BC023583|GSTO2|119391|glutathione S-transferase omega 2##AK297522|GSTO2|119391|glutathione S-transferase omega 2##AK300508|GSTO2|119391|glutathione S-transferase omega 2##AK296266|GSTO2|119391|glutathione S-transferase omega 2##AY191318|GSTO2|119391|glutathione S-transferase omega 2##AY209189|GSTO2|119391|glutathione S-transferase omega 2##AY350731|GSTO2|119391|glutathione S-transferase omega 2##AK291886|GSTO2|119391|glutathione S-transferase omega 2##BC070108|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##NM_033397|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##AB051541|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC036225|CCDC147|159686|coiled-coil domain containing 147##NM_001008723|CCDC147|159686|coiled-coil domain containing 147##BX641120|CCDC147|159686|coiled-coil domain containing 147##AK093227|CCDC147|159686|coiled-coil domain containing 147##BC109126|CCDC147|159686|coiled-coil domain containing 147	0.0	0.0	
chr2	158269957	158270137	reg1004092.p2	6.990	+	NM_001009959 AK296477	-85891	-	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	-87763	-	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	-155754	+	L06633 AB528875 CU690346 AF068836 BC036449 TSC_hg19_v1_chr2_-_158300602 AK312753 NM_004288	30517	-	TSC_hg19_v1_chr2_-_158454049 AF525679 NM_001111031	184028	-	AB590288 CU692676 DQ895570 EU176205 AF525680 AF525681 AY127050 TSC_hg19_v1_chr2_-_158485239	215151	-	NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##L06633|CYTIP|9595|cytohesin 1 interacting protein##AF068836|CYTIP|9595|cytohesin 1 interacting protein##BC036449|CYTIP|9595|cytohesin 1 interacting protein##AK312753|CYTIP|9595|cytohesin 1 interacting protein##NM_004288|CYTIP|9595|cytohesin 1 interacting protein##AF525679|ACVR1C|130399|activin A receptor, type IC##NM_001111031|ACVR1C|130399|activin A receptor, type IC##DQ895570|ACVR1C|130399|activin A receptor, type IC##EU176205|ACVR1C|130399|activin A receptor, type IC##AF525680|ACVR1C|130399|activin A receptor, type IC##AF525681|ACVR1C|130399|activin A receptor, type IC##AY127050|ACVR1C|130399|activin A receptor, type IC	0.011146	0.0	
chr8	129218199	129218379	reg1005479.p1	6.990	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-411506	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-469799	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-469964	+	AB042405 NM_031415	1580844	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1733626	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1733717	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.0	0.0	
chr10	27443394	27443542	reg1005677.p2	6.989	+	TSC_hg19_v1_chr10_-_27443314 AK297973 AJ132637 NM_001253866 NM_014263 NM_139312	-140	-	TSC_hg19_v1_chr10_-_27443304 BC007795 BC023507 BC024032	-177	-	AB384745 CU692788 BC019602 TSC_hg19_v1_chr10_-_27443272 AY358484 AK314372 AK291292	-261	-	NM_001172303 NM_001172304 NM_032844	284	+	AK022930 TSC_hg19_v1_chr10_-_27444222	740	-	AK074804 TSC_hg19_v1_chr10_+_27444291 AK027719	811	+	AK297973|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AJ132637|YME1L1|10730|YME1-like 1 (S. cerevisiae)##NM_001253866|YME1L1|10730|YME1-like 1 (S. cerevisiae)##NM_014263|YME1L1|10730|YME1-like 1 (S. cerevisiae)##NM_139312|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC007795|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC023507|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC024032|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC019602|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AY358484|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK314372|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK291292|YME1L1|10730|YME1-like 1 (S. cerevisiae)##NM_001172303|MASTL|84930|microtubule associated serine/threonine kinase-like##NM_001172304|MASTL|84930|microtubule associated serine/threonine kinase-like##NM_032844|MASTL|84930|microtubule associated serine/threonine kinase-like##AK022930|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK074804|MASTL|84930|microtubule associated serine/threonine kinase-like##AK027719|MASTL|84930|microtubule associated serine/threonine kinase-like	0.997019	0.0	denovo_WM_7:40:0.667
chr10	97453944	97454086	reg1005434.p1	6.989	+	BC068449 DQ278872 NM_001143973 NM_015631	-116	-	BC061582 TSC_hg19_v1_chr10_-_97453684 CU686635 AY359022 AL050022 AK299141 AK075357 AK098295	-369	-	TSC_hg19_v1_chr10_-_97416598 NM_001017423 NM_002860	-37434	-	AJ133133 AJ133134 NM_001098175	17520	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	61525	+	AK294399 NM_001130446	213706	+	BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##BC061582|TCTN3|26123|tectonic family member 3##AY359022|TCTN3|26123|tectonic family member 3##AL050022|TCTN3|26123|tectonic family member 3##AK299141|TCTN3|26123|tectonic family member 3##AK075357|TCTN3|26123|tectonic family member 3##AK098295|TCTN3|26123|tectonic family member 3##NM_001017423|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##NM_002860|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131	0.0	0.920661	CTCF.p2:-76:0.921
chr1	155682499	155682630	reg1005601.p1	6.989	+	TSC_hg19_v1_chr1_+_155658903 X83544	-23654	+	AK225869 AK302281 NM_001199849 NM_001199850 NM_001199851 TSC_hg19_v1_chr1_+_155658881 AK293117 BC107487 BC107488 NM_004632 NM_033657	-23678	+	AK298201 CR749790 U18321 TSC_hg19_v1_chr1_+_155658873	-23688	+	TSC_hg19_v1_chr1_-_155774769 AK315191 BC071650	92227	-	TSC_hg19_v1_chr1_-_155827003 AB232668 AY335492 BC114629 BC115703 BX537764 NM_001037533 NM_032292 AY335490 BX648043 AK098734 BX648802	144412	-	TSC_hg19_v1_chr1_-_155827021 AB195687 AB195688	144488	-	X83544|DAP3|7818|death associated protein 3##AK225869|DAP3|7818|death associated protein 3##AK302281|DAP3|7818|death associated protein 3##NM_001199849|DAP3|7818|death associated protein 3##NM_001199850|DAP3|7818|death associated protein 3##NM_001199851|DAP3|7818|death associated protein 3##AK293117|DAP3|7818|death associated protein 3##BC107487|DAP3|7818|death associated protein 3##BC107488|DAP3|7818|death associated protein 3##NM_004632|DAP3|7818|death associated protein 3##NM_033657|DAP3|7818|death associated protein 3##AK298201|DAP3|7818|death associated protein 3##CR749790|DAP3|7818|death associated protein 3##U18321|DAP3|7818|death associated protein 3##AK315191|GON4L|54856|gon-4-like (C. elegans)##BC071650|GON4L|54856|gon-4-like (C. elegans)##AB232668|GON4L|54856|gon-4-like (C. elegans)##AY335492|GON4L|54856|gon-4-like (C. elegans)##BC114629|GON4L|54856|gon-4-like (C. elegans)##BC115703|GON4L|54856|gon-4-like (C. elegans)##BX537764|GON4L|54856|gon-4-like (C. elegans)##NM_001037533|GON4L|54856|gon-4-like (C. elegans)##NM_032292|GON4L|54856|gon-4-like (C. elegans)##AY335490|GON4L|54856|gon-4-like (C. elegans)##BX648043|GON4L|54856|gon-4-like (C. elegans)##AK098734|GON4L|54856|gon-4-like (C. elegans)##BX648802|GON4L|54856|gon-4-like (C. elegans)##AB195687|GON4L|54856|gon-4-like (C. elegans)##AB195688|GON4L|54856|gon-4-like (C. elegans)	0.0	0.0	
chr5	141704772	141704894	reg1001956.p2	6.989	+	TSC_hg19_v1_chr5_-_141704587 AK096464 NM_001127496 NM_030964	-199	-	BC125095 BC125096 TSC_hg19_v1_chr5_-_141704555 AF227516 AF227517	-313	-	TSC_hg19_v1_chr5_+_141488389 AB097010 AB097037 BC004317	-216423	+	S67291 S67292 S67294 AB528663 X65778 X65779 M13361 NM_033137 X51943	288875	-	L01487 BC032697 NM_001144892	296069	-	M60516 NM_000800	360786	-	AK096464|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_001127496|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_030964|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125095|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125096|SPRY4|81848|sprouty homolog 4 (Drosophila)##AF227516|SPRY4|81848|sprouty homolog 4 (Drosophila)##AB097010|NDFIP1|80762|Nedd4 family interacting protein 1##AB097037|NDFIP1|80762|Nedd4 family interacting protein 1##BC004317|NDFIP1|80762|Nedd4 family interacting protein 1##S67291|FGF1|2246|fibroblast growth factor 1 (acidic)##S67292|FGF1|2246|fibroblast growth factor 1 (acidic)##S67294|FGF1|2246|fibroblast growth factor 1 (acidic)##X65778|FGF1|2246|fibroblast growth factor 1 (acidic)##X65779|FGF1|2246|fibroblast growth factor 1 (acidic)##M13361|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_033137|FGF1|2246|fibroblast growth factor 1 (acidic)##X51943|FGF1|2246|fibroblast growth factor 1 (acidic)##L01487|FGF1|2246|fibroblast growth factor 1 (acidic)##BC032697|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144892|FGF1|2246|fibroblast growth factor 1 (acidic)##M60516|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_000800|FGF1|2246|fibroblast growth factor 1 (acidic)	0.997906	0.0	denovo_WM_7:15:0.298	denovo_WM_7:16:0.298	denovo_WM_7:17:0.298
chr1	86861714	86861858	reg1005646.p1	6.988	+	BC116180 BC113654 BC117170 BC143715 BC143717 BC143718 AY244357 NM_152890	-239673	-	TSC_hg19_v1_chr1_-_86174088 AL442074 BC026236 AK298149 NM_001170670 NM_017953	-687673	-	EU446811 AK000767 TSC_hg19_v1_chr1_-_86174035 BC110898 AK314566	-687780	-	BC091490 TSC_hg19_v1_chr1_-_86862004 AB033055 BC047368 BC009779 BC012579 AK308351 AK302792 BC026105 AK303209 NM_001007022 NM_001184765 NM_001184766 NM_020729	189	-	NM_006536 AF043977 AK296719 AK290348 AK307937 BC041096 AB026833 AF127980	28063	+	NM_001285 TSC_hg19_v1_chr1_+_86934607 AK314375 AK291999 AK097057 AF127036	72801	+	BC116180|COL24A1|255631|collagen, type XXIV, alpha 1##BC113654|COL24A1|255631|collagen, type XXIV, alpha 1##BC117170|COL24A1|255631|collagen, type XXIV, alpha 1##BC143715|COL24A1|255631|collagen, type XXIV, alpha 1##BC143717|COL24A1|255631|collagen, type XXIV, alpha 1##BC143718|COL24A1|255631|collagen, type XXIV, alpha 1##AY244357|COL24A1|255631|collagen, type XXIV, alpha 1##NM_152890|COL24A1|255631|collagen, type XXIV, alpha 1##AL442074|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC026236|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK298149|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_001170670|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_017953|ZNHIT6|54680|zinc finger, HIT-type containing 6##EU446811|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK000767|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC110898|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK314566|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC091490|ODF2L|57489|outer dense fiber of sperm tails 2-like##AB033055|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC047368|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC009779|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC012579|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK308351|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK302792|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC026105|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK303209|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001007022|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001184765|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001184766|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_020729|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_006536|CLCA2|9635|chloride channel accessory 2##AF043977|CLCA2|9635|chloride channel accessory 2##AK290348|CLCA2|9635|chloride channel accessory 2##AK307937|CLCA2|9635|chloride channel accessory 2##BC041096|CLCA2|9635|chloride channel accessory 2##AB026833|CLCA2|9635|chloride channel accessory 2##AF127980|CLCA2|9635|chloride channel accessory 2##NM_001285|CLCA1|1179|chloride channel accessory 1##AK314375|CLCA1|1179|chloride channel accessory 1##AK291999|CLCA1|1179|chloride channel accessory 1##AK097057|CLCA1|1179|chloride channel accessory 1##AF127036|CLCA1|1179|chloride channel accessory 1	0.0	0.0	
chr6	163835104	163835219	reg1005715.p2	6.988	+	AF546872 NM_001080379 BC030642	-686145	+	TSC_hg19_v1_chr6_-_163148808 NM_004562 NM_013987 NM_013988	-686345	-	TSC_hg19_v1_chr6_-_163148799 AB009973	-686363	-	TSC_hg19_v1_chr6_+_163835675 AB067798 AB067799 AB067800 AB067801 NM_006775 NM_206853 NM_206854 NM_206855	511	+	TSC_hg19_v1_chr6_+_163835795 AF272349	629	+	BC019917 TSC_hg19_v1_chr6_+_163836201 AB590716 DQ323998 EU832828 GQ129383 AY780788 AK027309	1071	+	AF546872|PACRG|135138|PARK2 co-regulated##NM_001080379|PACRG|135138|PARK2 co-regulated##BC030642|PACRG|135138|PARK2 co-regulated##NM_004562|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##NM_013987|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##NM_013988|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##AB009973|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##AB067798|QKI|9444|QKI, KH domain containing, RNA binding##AB067799|QKI|9444|QKI, KH domain containing, RNA binding##AB067800|QKI|9444|QKI, KH domain containing, RNA binding##AB067801|QKI|9444|QKI, KH domain containing, RNA binding##NM_006775|QKI|9444|QKI, KH domain containing, RNA binding##NM_206853|QKI|9444|QKI, KH domain containing, RNA binding##NM_206854|QKI|9444|QKI, KH domain containing, RNA binding##NM_206855|QKI|9444|QKI, KH domain containing, RNA binding##AF272349|QKI|9444|QKI, KH domain containing, RNA binding##BC019917|QKI|9444|QKI, KH domain containing, RNA binding##DQ323998|QKI|9444|QKI, KH domain containing, RNA binding##EU832828|QKI|9444|QKI, KH domain containing, RNA binding##GQ129383|QKI|9444|QKI, KH domain containing, RNA binding##AY780788|QKI|9444|QKI, KH domain containing, RNA binding##AK027309|QKI|9444|QKI, KH domain containing, RNA binding	0.0	0.0	
chr9	134144294	134144406	reg1001073.p1	6.988	+	TSC_hg19_v1_chr9_+_134001016 D14689 AB159230	-143300	+	TSC_hg19_v1_chr9_+_134000975 BC105998 AK307573 NM_005085 AL832609 X64228 BC045620 BC012500	-143376	+	TSC_hg19_v1_chr9_+_133971917 AY359067 AK057789 AK314600 AK022845 AK128526 AK091912 AL136566 AL833896 BC009826 BC021253 AM392853 AM393301 AM393860	-172392	+	BC049388 NM_033387 AK095423	7569	-	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	20878	+	TSC_hg19_v1_chr9_+_134269515 BC002872	125216	+	D14689|NUP214|8021|nucleoporin 214kDa##AB159230|NUP214|8021|nucleoporin 214kDa##BC105998|NUP214|8021|nucleoporin 214kDa##AK307573|NUP214|8021|nucleoporin 214kDa##NM_005085|NUP214|8021|nucleoporin 214kDa##AL832609|NUP214|8021|nucleoporin 214kDa##X64228|NUP214|8021|nucleoporin 214kDa##BC045620|NUP214|8021|nucleoporin 214kDa##BC012500|NUP214|8021|nucleoporin 214kDa##AY359067|AIF1L|83543|allograft inflammatory factor 1-like##AK057789|AIF1L|83543|allograft inflammatory factor 1-like##AK314600|AIF1L|83543|allograft inflammatory factor 1-like##AK022845|AIF1L|83543|allograft inflammatory factor 1-like##AK128526|AIF1L|83543|allograft inflammatory factor 1-like##AK091912|AIF1L|83543|allograft inflammatory factor 1-like##AL136566|AIF1L|83543|allograft inflammatory factor 1-like##AL833896|AIF1L|83543|allograft inflammatory factor 1-like##BC009826|AIF1L|83543|allograft inflammatory factor 1-like##BC021253|AIF1L|83543|allograft inflammatory factor 1-like##AM392853|AIF1L|83543|allograft inflammatory factor 1-like##AM393301|AIF1L|83543|allograft inflammatory factor 1-like##AM393860|AIF1L|83543|allograft inflammatory factor 1-like##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC002872|PRRC2B|84726|proline-rich coiled-coil 2B	0.979918	0.0	denovo_WM_7:-62:0.915
chr1	31364687	31364788	reg1005771.p2	6.987	+	TSC_hg19_v1_chr1_-_31345363 AL049426	-19339	-	TSC_hg19_v1_chr1_-_31230697 NM_006762	-134047	-	AB383742 TSC_hg19_v1_chr1_-_31230622 D42042 U30498 AK297014 AK307303 AK292009 BC106896 BC106897 U51240	-134105	-	AB385258 AF248634 NM_014654 TSC_hg19_v1_chr1_-_31381606	16811	-	TSC_hg19_v1_chr1_-_31538543 BC013398 D43951 AK291779 AK300457 AF315592 AK096476 AK222605	173780	-	TSC_hg19_v1_chr1_-_31538565 GQ334687 GQ334688 NM_001020658 NM_014676 AK294477	173855	-	AL049426|SDC3|9672|syndecan 3##NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##D42042|LAPTM5|7805|lysosomal protein transmembrane 5##U30498|LAPTM5|7805|lysosomal protein transmembrane 5##AK297014|LAPTM5|7805|lysosomal protein transmembrane 5##AK292009|LAPTM5|7805|lysosomal protein transmembrane 5##BC106896|LAPTM5|7805|lysosomal protein transmembrane 5##BC106897|LAPTM5|7805|lysosomal protein transmembrane 5##U51240|LAPTM5|7805|lysosomal protein transmembrane 5##AF248634|SDC3|9672|syndecan 3##NM_014654|SDC3|9672|syndecan 3##BC013398|PUM1|9698|pumilio homolog 1 (Drosophila)##D43951|PUM1|9698|pumilio homolog 1 (Drosophila)##AK291779|PUM1|9698|pumilio homolog 1 (Drosophila)##AK300457|PUM1|9698|pumilio homolog 1 (Drosophila)##AF315592|PUM1|9698|pumilio homolog 1 (Drosophila)##AK096476|PUM1|9698|pumilio homolog 1 (Drosophila)##AK222605|PUM1|9698|pumilio homolog 1 (Drosophila)##NM_001020658|PUM1|9698|pumilio homolog 1 (Drosophila)##NM_014676|PUM1|9698|pumilio homolog 1 (Drosophila)##AK294477|PUM1|9698|pumilio homolog 1 (Drosophila)	0.998539	0.0	denovo_WM_7:-31:0.449	denovo_WM_7:-32:0.449
chr17	44770824	44770964	reg1007435.p1	6.987	+	NM_006178 AF135168 AF102846 AK294001 AK294727 AK294886 AK299786 BC030613 AK226078 AK290204 AK316057 U03985	-102817	+	BC020869 AB209344 AF208864 BX647266 NM_001113738 NM_016632	-113847	-	BC040501 CR749232 NM_001006607	-180819	+	AB464356 AB067628 BC114219 BC112116 BC112118 AY009397 NM_030753	125127	-	AY358217 AK127615 AB063483 NM_003396 BC064534 AB590853	158080	+	TSC_hg19_v1_chr17_+_45000492 NM_001012511 NM_004287 NM_054022	229593	+	NM_006178|NSF|4905|N-ethylmaleimide-sensitive factor##AF135168|NSF|4905|N-ethylmaleimide-sensitive factor##AF102846|NSF|4905|N-ethylmaleimide-sensitive factor##AK294001|NSF|4905|N-ethylmaleimide-sensitive factor##AK294727|NSF|4905|N-ethylmaleimide-sensitive factor##AK294886|NSF|4905|N-ethylmaleimide-sensitive factor##AK299786|NSF|4905|N-ethylmaleimide-sensitive factor##BC030613|NSF|4905|N-ethylmaleimide-sensitive factor##AK226078|NSF|4905|N-ethylmaleimide-sensitive factor##AK290204|NSF|4905|N-ethylmaleimide-sensitive factor##AK316057|NSF|4905|N-ethylmaleimide-sensitive factor##U03985|NSF|4905|N-ethylmaleimide-sensitive factor##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AB209344|ARL17A|51326|ADP-ribosylation factor-like 17A##AF208864|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2##AB067628|WNT3|7473|wingless-type MMTV integration site family, member 3##BC114219|WNT3|7473|wingless-type MMTV integration site family, member 3##BC112116|WNT3|7473|wingless-type MMTV integration site family, member 3##BC112118|WNT3|7473|wingless-type MMTV integration site family, member 3##AY009397|WNT3|7473|wingless-type MMTV integration site family, member 3##NM_030753|WNT3|7473|wingless-type MMTV integration site family, member 3##AY358217|WNT9B|7484|wingless-type MMTV integration site family, member 9B##AK127615|WNT9B|7484|wingless-type MMTV integration site family, member 9B##AB063483|WNT9B|7484|wingless-type MMTV integration site family, member 9B##NM_003396|WNT9B|7484|wingless-type MMTV integration site family, member 9B##BC064534|WNT9B|7484|wingless-type MMTV integration site family, member 9B##NM_001012511|GOSR2|9570|golgi SNAP receptor complex member 2##NM_004287|GOSR2|9570|golgi SNAP receptor complex member 2##NM_054022|GOSR2|9570|golgi SNAP receptor complex member 2	0.996106	0.0	denovo_WM_7:-4:0.715
chr14	34003380	34003556	reg1005417.p1	6.986	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-594978	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1204932	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1456962	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	416681	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	928019	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	1005417	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	0.996948	0.0	denovo_WM_7:-33:0.239	denovo_WM_7:-34:0.239	denovo_WM_7:-35:0.239	denovo_WM_7:-36:0.239
chr14	35312275	35312404	reg1005397.p1	6.986	+	TSC_hg19_v1_chr14_-_35183800 NM_001243645 AF134803 BC022364 BC022876 BC025683 NM_138638	-128464	-	BC011444 AK314157 NM_021914 AF134802	-129351	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	-212984	-	AB593178 TSC_hg19_v1_chr14_+_35343416 BC039097	31137	+	TSC_hg19_v1_chr14_-_35344080 BC020636	31769	-	AF086397 AF213467 TSC_hg19_v1_chr14_-_35344486	32130	-	NM_001243645|CFL2|1073|cofilin 2 (muscle)##AF134803|CFL2|1073|cofilin 2 (muscle)##BC022364|CFL2|1073|cofilin 2 (muscle)##BC022876|CFL2|1073|cofilin 2 (muscle)##BC025683|CFL2|1073|cofilin 2 (muscle)##NM_138638|CFL2|1073|cofilin 2 (muscle)##BC011444|CFL2|1073|cofilin 2 (muscle)##AK314157|CFL2|1073|cofilin 2 (muscle)##NM_021914|CFL2|1073|cofilin 2 (muscle)##AF134802|CFL2|1073|cofilin 2 (muscle)##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6##BC020636|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF086397|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF213467|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A	0.999816	0.0	denovo_WM_7:-5:0.479	denovo_WM_7:-6:0.428
chr15	60619178	60619280	reg1005387.p1	6.985	+	TSC_hg19_v1_chr15_+_60296509 AK314075	-322680	+	EF565104 TSC_hg19_v1_chr15_+_60296453	-322780	+	AK290944 NM_012182 TSC_hg19_v1_chr15_+_60296425	-322801	+	AB587463 BC068065 BC009564 BC021114 BC052567 BC001388 BC013843 D00017 TSC_hg19_v1_chr15_-_60690186 AK222542 BX640598 AK297923 BC015834 BC023990 BC066955 BC093056 D28364 NM_001002857 NM_001002858 NM_001136015 NM_004039 AK309956 BC016774	70932	-	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	152045	-	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	265450	-	AK314075|FOXB1|27023|forkhead box B1##AK290944|FOXB1|27023|forkhead box B1##NM_012182|FOXB1|27023|forkhead box B1##BC068065|ANXA2|302|annexin A2##BC009564|ANXA2|302|annexin A2##BC021114|ANXA2|302|annexin A2##BC052567|ANXA2|302|annexin A2##BC001388|ANXA2|302|annexin A2##BC013843|ANXA2|302|annexin A2##D00017|ANXA2|302|annexin A2##AK222542|ANXA2|302|annexin A2##BX640598|ANXA2|302|annexin A2##AK297923|ANXA2|302|annexin A2##BC015834|ANXA2|302|annexin A2##BC023990|ANXA2|302|annexin A2##BC066955|ANXA2|302|annexin A2##BC093056|ANXA2|302|annexin A2##D28364|ANXA2|302|annexin A2##NM_001002857|ANXA2|302|annexin A2##NM_001002858|ANXA2|302|annexin A2##NM_001136015|ANXA2|302|annexin A2##NM_004039|ANXA2|302|annexin A2##BC016774|ANXA2|302|annexin A2##BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A	0.0	0.40579	CTCF.p2:-12:0.406
chr14	70045259	70045412	reg1007094.p1	6.984	+	TSC_hg19_v1_chr14_+_69951404 AK126770 NM_001161498 BC146872	-93855	+	TSC_hg19_v1_chr14_+_69865419 BC047682	-179899	+	TSC_hg19_v1_chr14_+_69865408 NM_001252148 NM_001252150 NM_018375 AK222547 AK002136 AK311104	-179940	+	AK309302 NM_014734 TSC_hg19_v1_chr14_+_70078312 BC064697	32975	+	TSC_hg19_v1_chr14_+_70078414 AK311470 D87434	33056	+	TSC_hg19_v1_chr14_+_70233809 BX640605	188471	+	AK126770|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##NM_001161498|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC146872|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC047682|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252148|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252150|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_018375|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK222547|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK002136|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK309302|KIAA0247|9766|KIAA0247##NM_014734|KIAA0247|9766|KIAA0247##BC064697|KIAA0247|9766|KIAA0247##D87434|KIAA0247|9766|KIAA0247##BX640605|SRSF5|6430|serine/arginine-rich splicing factor 5	0.980586	0.0	denovo_WM_7:55:0.693
chr19	7186323	7186503	reg1001612.p2	6.983	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-86862	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-116698	+	AK315405 NM_001044387 NM_001044388 NM_024341	-116951	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	107547	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	273594	+	TSC_hg19_v1_chr19_+_7460061 AB011093	273664	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.0	0.031585	
chr7	74596878	74597005	reg1004590.p1	6.981	+	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-88567	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-107249	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-107303	-	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	270579	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	391629	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	428024	+	NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73	0.026859	0.0	
chr14	21776936	21777096	reg1005395.p1	6.980	+	AJ417067 NM_020366	-20881	+	M16342 BC108658 BX247992 BC089438 BC008364 TSC_hg19_v1_chr14_-_21737587 BC003394 BC071943 BX247961 M29063 AB209527 AK223517 BC066932 AK298906 AK312382 D28382 AK297482 AK299923 AK312338 BC103758 AK292619 BC007052 BC008423 AL833432 BC092433 AK225032 AK302213 NM_001077442 NM_001077443 NM_004500 NM_031314	-39445	-	NM_001004731 BC137304 BC137305	-152814	-	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	75106	-	BC000565 BC014046 TSC_hg19_v1_chr14_-_21852177 BC021561 BC111402	75153	-	AK024072 NM_007192	75408	-	AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##M16342|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC108658|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247992|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC089438|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008364|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC003394|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC071943|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247961|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##M29063|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AB209527|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK223517|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC066932|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK298906|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##D28382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK297482|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK299923|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312338|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC103758|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK292619|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC007052|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008423|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AL833432|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC092433|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK225032|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK302213|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077442|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077443|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_004500|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_031314|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001004731|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137304|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137305|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC000565|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC014046|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC111402|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK024072|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##NM_007192|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)	0.0	0.0	
chr2	207110990	207111150	reg1000497.p3	6.980	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	-28372	-	TSC_hg19_v1_chr2_+_207024617 AK291910 AK310096 D28350 BC067787 BC029316 BC004931 AB529032 CU688340 BT007079 CR456825	-86412	+	S81522 X60656 TSC_hg19_v1_chr2_+_207024348 BC000211 X60489	-86671	+	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	28397	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	197263	+	AK129906 TSC_hg19_v1_chr2_+_207406857	295766	+	AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK291910|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK310096|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##D28350|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC067787|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC029316|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC004931|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BT007079|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##CR456825|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##S81522|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60656|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC000211|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60489|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23##AK129906|ADAM23|8745|ADAM metallopeptidase domain 23	0.2368	0.0	
chr6_cox_hap2	2247609	2247750	reg1005870.p2	6.980	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.981751	0.0	denovo_WM_7:21:0.337	denovo_WM_7:22:0.355	denovo_WM_7:23:0.266
chr1	109583549	109583659	reg1005606.p2	6.979	+	TSC_hg19_v1_chr1_-_109506107 AK090563 AX746511 BC002939 AK293786 NM_001048210 NM_015127	-77527	-	TSC_hg19_v1_chr1_+_109419783 AK295563 BC027732	-163817	+	TSC_hg19_v1_chr1_+_109419606 AB445462 NM_013296 AK314249	-163993	+	TSC_hg19_v1_chr1_-_109584725 AK225781 AB020700 AK289789 BC039254 BC034964 NM_001142550 NM_001142551 NM_014969	1115	-	AB587451 TSC_hg19_v1_chr1_-_109618626 X84003 BC017821 BC121180 BC121181 AK312158 NM_005645	34997	-	BC066918 AK075191 TSC_hg19_v1_chr1_+_109633380 AF164793 AK310192 BC008739 BC065186 NM_020141 AK291293 BC067116	49790	+	AK090563|CLCC1|23155|chloride channel CLIC-like 1##BC002939|CLCC1|23155|chloride channel CLIC-like 1##AK293786|AKNAD1|254268|AKNA domain containing 1##NM_001048210|CLCC1|23155|chloride channel CLIC-like 1##NM_015127|CLCC1|23155|chloride channel CLIC-like 1##AK295563|GPSM2|29899|G-protein signaling modulator 2##BC027732|GPSM2|29899|G-protein signaling modulator 2##AB445462|GPSM2|29899|G-protein signaling modulator 2##NM_013296|GPSM2|29899|G-protein signaling modulator 2##AK314249|GPSM2|29899|G-protein signaling modulator 2##AK225781|WDR47|22911|WD repeat domain 47##AB020700|WDR47|22911|WD repeat domain 47##AK289789|WDR47|22911|WD repeat domain 47##BC039254|WDR47|22911|WD repeat domain 47##BC034964|WDR47|22911|WD repeat domain 47##NM_001142550|WDR47|22911|WD repeat domain 47##NM_001142551|WDR47|22911|WD repeat domain 47##NM_014969|WDR47|22911|WD repeat domain 47##X84003|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121180|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121181|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##AK312158|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##NM_005645|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC066918|TMEM167B|56900|transmembrane protein 167B##AK075191|TMEM167B|56900|transmembrane protein 167B##AF164793|TMEM167B|56900|transmembrane protein 167B##AK310192|TMEM167B|56900|transmembrane protein 167B##BC008739|TMEM167B|56900|transmembrane protein 167B##BC065186|TMEM167B|56900|transmembrane protein 167B##NM_020141|TMEM167B|56900|transmembrane protein 167B##AK291293|TMEM167B|56900|transmembrane protein 167B##BC067116|TMEM167B|56900|transmembrane protein 167B	0.912846	0.0	denovo_WM_7:35:0.874
chr11	46402029	46402162	reg1004441.p1	6.979	+	TSC_hg19_v1_chr11_+_46383155 NM_001105540 U94905	-18960	+	TSC_hg19_v1_chr11_+_46369117 NM_001199266 NM_001199267 NM_001199268 NM_003646 AK225774 U51477 BC041770 AK293615 AK294888 AK312398	-33071	+	TSC_hg19_v1_chr11_+_46367020 AK300577	-35059	+	AK309963 AK308210 TSC_hg19_v1_chr11_+_46402507 AK130889 NM_001012334	380	+	TSC_hg19_v1_chr11_+_46403232 DQ323888 DQ323889 DQ323890 NM_002391	1125	+	TSC_hg19_v1_chr11_+_46403264 BC011704	1171	+	NM_001105540|DGKZ|8525|diacylglycerol kinase, zeta##U94905|DGKZ|8525|diacylglycerol kinase, zeta##NM_001199266|DGKZ|8525|diacylglycerol kinase, zeta##NM_001199267|DGKZ|8525|diacylglycerol kinase, zeta##NM_001199268|DGKZ|8525|diacylglycerol kinase, zeta##NM_003646|DGKZ|8525|diacylglycerol kinase, zeta##AK225774|DGKZ|8525|diacylglycerol kinase, zeta##U51477|DGKZ|8525|diacylglycerol kinase, zeta##BC041770|DGKZ|8525|diacylglycerol kinase, zeta##AK293615|DGKZ|8525|diacylglycerol kinase, zeta##AK294888|DGKZ|8525|diacylglycerol kinase, zeta##AK312398|DGKZ|8525|diacylglycerol kinase, zeta##AK300577|DGKZ|8525|diacylglycerol kinase, zeta##AK309963|MDK|4192|midkine (neurite growth-promoting factor 2)##AK308210|MDK|4192|midkine (neurite growth-promoting factor 2)##AK130889|MDK|4192|midkine (neurite growth-promoting factor 2)##NM_001012334|MDK|4192|midkine (neurite growth-promoting factor 2)##DQ323888|MDK|4192|midkine (neurite growth-promoting factor 2)##DQ323889|MDK|4192|midkine (neurite growth-promoting factor 2)##DQ323890|MDK|4192|midkine (neurite growth-promoting factor 2)##NM_002391|MDK|4192|midkine (neurite growth-promoting factor 2)##BC011704|MDK|4192|midkine (neurite growth-promoting factor 2)	0.977234	0.0	denovo_WM_7:3:0.714	denovo_WM_7:4:0.209
chr4	103501060	103501200	reg1005571.p1	6.978	+	TSC_hg19_v1_chr4_+_103422822 AK291450	-78307	+	TSC_hg19_v1_chr4_+_103422737 M55643	-78368	+	TSC_hg19_v1_chr4_+_103422554 M58603	-78575	+	EU009130 TSC_hg19_v1_chr4_-_103682110 AK300015 AB209846 AK312827	180956	-	TSC_hg19_v1_chr4_-_103682126 U60337 AK291598 BC015743	181005	-	NM_005908 TSC_hg19_v1_chr4_-_103682152	181034	-	AK291450|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M55643|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M58603|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##EU009130|MANBA|4126|mannosidase, beta A, lysosomal##AK300015|MANBA|4126|mannosidase, beta A, lysosomal##AB209846|MANBA|4126|mannosidase, beta A, lysosomal##AK312827|MANBA|4126|mannosidase, beta A, lysosomal##U60337|MANBA|4126|mannosidase, beta A, lysosomal##AK291598|MANBA|4126|mannosidase, beta A, lysosomal##BC015743|MANBA|4126|mannosidase, beta A, lysosomal##NM_005908|MANBA|4126|mannosidase, beta A, lysosomal	0.9715	0.0	denovo_WM_7:4:0.844
chr1	2232720	2232830	reg1005008.p2	6.977	+	NM_003036 X15218 TSC_hg19_v1_chr1_+_2160159	-72606	+	AK127994 NM_001146310	-93604	-	TSC_hg19_v1_chr1_-_2126212 BC041041 AF469129 BC066360 AK055593 BC103992 NM_182533	-106596	-	TSC_hg19_v1_chr1_-_2322994 AK024003 NM_024848	90217	-	TSC_hg19_v1_chr1_-_2322997 AK299217 AK310323 BC021704	90295	-	TSC_hg19_v1_chr1_+_2323265 NM_007033 AF157324	90460	+	NM_003036|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##X15218|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##AK127994|C1orf86|199990|chromosome 1 open reading frame 86##NM_001146310|C1orf86|199990|chromosome 1 open reading frame 86##BC041041|C1orf86|199990|chromosome 1 open reading frame 86##AF469129|C1orf86|199990|chromosome 1 open reading frame 86##BC066360|C1orf86|199990|chromosome 1 open reading frame 86##AK055593|C1orf86|199990|chromosome 1 open reading frame 86##BC103992|C1orf86|199990|chromosome 1 open reading frame 86##NM_182533|C1orf86|199990|chromosome 1 open reading frame 86##AK024003|MORN1|79906|MORN repeat containing 1##NM_024848|MORN1|79906|MORN repeat containing 1##AK299217|MORN1|79906|MORN repeat containing 1##AK310323|MORN1|79906|MORN repeat containing 1##BC021704|MORN1|79906|MORN repeat containing 1##NM_007033|RER1|11079|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)##AF157324|RER1|11079|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	0.0	0.0	
chr3	39190635	39190799	reg1005565.p2	6.977	+	NM_001105513 NM_145755 AJ487015 BC062621 BC129948 AK022483 BC039691 AK302408 AK302465 CU687576	-41478	+	TSC_hg19_v1_chr3_-_39149122 BC075854 AK001574 AK057043 AJ409349 NM_031899 AK303847	-41591	-	CU687304 AB527597 TSC_hg19_v1_chr3_-_39149103 BC064624 AK300271 BC103826 BC103827 BC008928	-41646	-	TSC_hg19_v1_chr3_-_39195053 BC038949 AB053121 BC028213	4334	-	NM_033027 TSC_hg19_v1_chr3_-_39195146	4407	-	BC127119 BC139782 AY375160 NM_194293 TSC_hg19_v1_chr3_-_39234085 AJ626899 AJ626900 NM_001198621 AK096421 BX648565 CR749430	43368	-	NM_001105513|TTC21A|199223|tetratricopeptide repeat domain 21A##NM_145755|TTC21A|199223|tetratricopeptide repeat domain 21A##AJ487015|TTC21A|199223|tetratricopeptide repeat domain 21A##BC062621|TTC21A|199223|tetratricopeptide repeat domain 21A##BC129948|TTC21A|199223|tetratricopeptide repeat domain 21A##AK022483|TTC21A|199223|tetratricopeptide repeat domain 21A##BC039691|TTC21A|199223|tetratricopeptide repeat domain 21A##AK302408|TTC21A|199223|tetratricopeptide repeat domain 21A##AK302465|TTC21A|199223|tetratricopeptide repeat domain 21A##BC075854|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK001574|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK057043|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AJ409349|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##NM_031899|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK303847|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC064624|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK300271|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC103826|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC103827|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC008928|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC038949|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##AB053121|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##BC028213|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##NM_033027|CSRNP1|64651|cysteine-serine-rich nuclear protein 1##BC127119|XIRP1|165904|xin actin-binding repeat containing 1##BC139782|XIRP1|165904|xin actin-binding repeat containing 1##AY375160|XIRP1|165904|xin actin-binding repeat containing 1##NM_194293|XIRP1|165904|xin actin-binding repeat containing 1##AJ626899|XIRP1|165904|xin actin-binding repeat containing 1##AJ626900|XIRP1|165904|xin actin-binding repeat containing 1##NM_001198621|XIRP1|165904|xin actin-binding repeat containing 1##AK096421|XIRP1|165904|xin actin-binding repeat containing 1##BX648565|XIRP1|165904|xin actin-binding repeat containing 1##CR749430|XIRP1|165904|xin actin-binding repeat containing 1	0.999618	0.0	denovo_WM_7:-100:0.457	denovo_WM_7:-101:0.457
chr16	12852972	12853152	reg1005501.p1	6.976	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-782489	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-793978	+	NM_001130007	-842544	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	44589	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	44657	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	142406	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	1.821896	0.0	denovo_WM_7:-12:0.238	denovo_WM_7:-14:0.291	denovo_WM_7:-17:0.229	denovo_WM_7:-32:0.228	denovo_WM_7:-33:0.233
chr20	31000323	31000467	reg1004144.p1	6.976	+	TSC_hg19_v1_chr20_+_30946787 AK122923	-53569	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	-54225	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	-134909	+	AB023195 TSC_hg19_v1_chr20_+_31017235	16816	+	TSC_hg19_v1_chr20_+_31037448 AL080086	37107	+	AK056286 TSC_hg19_v1_chr20_-_31071290 NM_080616	70870	-	AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##AB023195|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK056286|C20orf112|140688|chromosome 20 open reading frame 112##NM_080616|C20orf112|140688|chromosome 20 open reading frame 112	1.229536	0.0	denovo_WM_7:-4:0.233
chr11	118767498	118767650	reg1004953.p1	6.974	+	NM_032966 X68829	-3474	+	AK291512 NM_001716 BC110352 X68149 AB464488	-13014	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-105640	-	AB094091 NM_182557	14038	-	NM_006760 Y13645 BC113900 AY455312 AB009454	59489	+	AB094092 NM_181721 BC028191 BC125040 BC038969	74904	+	NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2##AB094092|FOXR1|283150|forkhead box R1##NM_181721|FOXR1|283150|forkhead box R1##BC028191|FOXR1|283150|forkhead box R1##BC125040|FOXR1|283150|forkhead box R1##BC038969|FOXR1|283150|forkhead box R1	0.0	0.0	
chr9	125753820	125753960	reg1004230.p1	6.974	+	AK131449 TSC_hg19_v1_chr9_+_125703299 BC020609 NM_012197 AK022408 BC054492 AF161357 AJ011679	-50662	+	BC018748 NM_020924 TSC_hg19_v1_chr9_-_125693788	-60104	-	X82018 AK292401 BC037282 NM_006626	-78301	-	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	41977	+	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	42955	+	TSC_hg19_v1_chr9_-_125874882 AK025814	121009	-	AK131449|RABGAP1|23637|RAB GTPase activating protein 1##BC020609|RABGAP1|23637|RAB GTPase activating protein 1##NM_012197|RABGAP1|23637|RAB GTPase activating protein 1##AK022408|RABGAP1|23637|RAB GTPase activating protein 1##BC054492|RABGAP1|23637|RAB GTPase activating protein 1##AF161357|RABGAP1|23637|RAB GTPase activating protein 1##AJ011679|RABGAP1|23637|RAB GTPase activating protein 1##BC018748|ZBTB26|57684|zinc finger and BTB domain containing 26##NM_020924|ZBTB26|57684|zinc finger and BTB domain containing 26##X82018|ZBTB6|10773|zinc finger and BTB domain containing 6##AK292401|ZBTB6|10773|zinc finger and BTB domain containing 6##BC037282|ZBTB6|10773|zinc finger and BTB domain containing 6##NM_006626|ZBTB6|10773|zinc finger and BTB domain containing 6##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)	0.998504	0.0	denovo_WM_7:2:0.449	denovo_WM_7:3:0.449
chr20	52273970	52274146	reg1005130.p1	6.972	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-63259	-	AF041259 NM_006526	-74423	-	AK302570 NM_001193421	-472237	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	413004	-	AK315220 NM_003657	413245	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	516462	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.783781	0.0	denovo_WM_7:28:0.400
chr19	14464243	14464394	reg1005244.p1	6.971	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-147270	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-203518	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-216327	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	27731	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	27937	+	TSC_hg19_v1_chr19_-_14529877 AK301847	65571	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.998675	0.461415	CTCF.p2:100:0.461
chr19	7472844	7472956	reg1004422.p2	6.971	+	TSC_hg19_v1_chr19_+_7460061 AB011093	-12823	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	-12893	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-178940	-	AK127045 NM_001130955	31673	+	TSC_hg19_v1_chr19_-_7553914 CU679101 AB095921 BC008780 NM_080662	81002	-	NM_198534 AK093103 AX747925 BC029824 BC034779	89569	+	AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB095921|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##BC008780|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##NM_080662|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##NM_198534|C19orf45|374877|chromosome 19 open reading frame 45##AK093103|C19orf45|374877|chromosome 19 open reading frame 45##BC029824|C19orf45|374877|chromosome 19 open reading frame 45##BC034779|C19orf45|374877|chromosome 19 open reading frame 45	1.120906	0.0	
chr2	80796651	80796755	reg1004824.p2	6.971	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-264860	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-264978	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-265178	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3889667	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3889692	-	NM_003849	3889882	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	1.054331	0.0	
chr13	41635939	41636119	reg1000384.p1	6.970	+	TSC_hg19_v1_chr13_+_41635650 AK000979 AK314525 AK001557 AK297536 BC108310 NM_007187 BC104879	-342	+	BX640798 TSC_hg19_v1_chr13_-_41635093	-944	-	TSC_hg19_v1_chr13_-_41593499 NM_172373	-42530	-	AL833839 EU832523 EU832605 BC051349 TSC_hg19_v1_chr13_-_41706883 BC000560 AK056633 AK299627 AK096608 NM_152903	70766	-	CR533558 CU692470 AB464601 AM393035 AM393575 DQ890838 DQ893994 TSC_hg19_v1_chr13_-_41768505	132428	-	TSC_hg19_v1_chr13_-_41768706 AK299614 AL136782 AK315589 BC022033 FJ150424 NM_032138 AK091344 AX746923	132596	-	AK000979|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK314525|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK001557|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK297536|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BC108310|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##NM_007187|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BC104879|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BX640798|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_172373|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AL833839|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832523|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832605|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC051349|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC000560|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK056633|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK299627|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK096608|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##NM_152903|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##CR533558|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AM393035|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AM393575|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##DQ890838|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##DQ893994|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK299614|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AL136782|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK315589|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##BC022033|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##FJ150424|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##NM_032138|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK091344|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7	0.0	0.01297	
chr15	60952869	60953031	reg1006417.p1	6.970	+	U04899 U04898 NM_002943 NM_134260	-33265	-	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	-68271	-	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	-181676	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	568474	-	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	568547	-	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	1399664	-	U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)	0.987156	0.0	denovo_WM_7:5:0.959
chr6	159528705	159528841	reg1005363.p1	6.969	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-62672	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-107552	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-107954	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	61657	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	585477	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	585589	-	BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial	0.986331	0.0	
chr9	33142703	33142817	reg1003374.p2	6.969	+	TSC_hg19_v1_chr9_-_33076673 NM_018225	-66068	-	CU678268 DQ893005 DQ896251 TSC_hg19_v1_chr9_-_33076667 AK001667 BC002876 EF011613 AK225587 AK304767 AK225559	-66123	-	BT007292 CU678881 DQ891091 EU176556 TSC_hg19_v1_chr9_+_33026519	-116260	+	TSC_hg19_v1_chr9_-_33167158 AK316294	24364	-	AB590749 X55415 TSC_hg19_v1_chr9_-_33167196 AK296928 AK312797	24426	-	D29805 X13223 X14085 M22921 U10474 TSC_hg19_v1_chr9_-_33167262	24487	-	NM_018225|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##DQ893005|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##DQ896251|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK001667|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##BC002876|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##EF011613|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK225587|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK304767|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK225559|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##BT007292|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##DQ891091|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##EU176556|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##AK316294|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X55415|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AK296928|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AK312797|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##D29805|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X13223|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X14085|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##M22921|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##U10474|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	0.0	0.0	
chr11	46498792	46498956	reg1004893.p1	6.968	+	BC119775 BC119817 AF385590 AF498918 NM_000741 BC095546 BC137535	-90743	-	NM_001012333 TSC_hg19_v1_chr11_+_46403310	-95568	+	TSC_hg19_v1_chr11_+_46403285 X55110	-95587	+	BC045609 NM_017749 AK302808	114068	-	AL834190 TSC_hg19_v1_chr11_-_46615568 AK057896 AK000301 AB051523	116661	-	AK304530 TSC_hg19_v1_chr11_-_46615589	116729	-	BC119775|CHRM4|1132|cholinergic receptor, muscarinic 4##BC119817|CHRM4|1132|cholinergic receptor, muscarinic 4##AF385590|CHRM4|1132|cholinergic receptor, muscarinic 4##AF498918|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_000741|CHRM4|1132|cholinergic receptor, muscarinic 4##BC095546|CHRM4|1132|cholinergic receptor, muscarinic 4##BC137535|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_001012333|MDK|4192|midkine (neurite growth-promoting factor 2)##X55110|MDK|4192|midkine (neurite growth-promoting factor 2)##BC045609|AMBRA1|55626|autophagy/beclin-1 regulator 1##NM_017749|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK302808|AMBRA1|55626|autophagy/beclin-1 regulator 1##AL834190|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK057896|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK000301|AMBRA1|55626|autophagy/beclin-1 regulator 1##AB051523|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK304530|AMBRA1|55626|autophagy/beclin-1 regulator 1	0.987341	0.0	denovo_WM_7:4:0.818
chr12	50205733	50205886	reg1004239.p1	6.968	+	TSC_hg19_v1_chr12_+_50156978 AK026605	-48781	+	BC036203 TSC_hg19_v1_chr12_+_50135987	-69838	+	NM_001098576 AK124849	-70217	+	TSC_hg19_v1_chr12_-_50222197 NM_001037806	16390	-	CU690986 BC053560 BC040957 AK292194 NM_181708	31080	-	CU674012 AB463040 TSC_hg19_v1_chr12_-_50297671 AB023167 BC000051 AK290031 AF190461 NM_012306	91858	-	AK026605|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##BC036203|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001098576|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK124849|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001037806|NCKAP5L|57701|NCK-associated protein 5-like##BC053560|BCDIN3D|144233|BCDIN3 domain containing##BC040957|BCDIN3D|144233|BCDIN3 domain containing##AK292194|BCDIN3D|144233|BCDIN3 domain containing##NM_181708|BCDIN3D|144233|BCDIN3 domain containing##AB023167|FAIM2|23017|Fas apoptotic inhibitory molecule 2##BC000051|FAIM2|23017|Fas apoptotic inhibitory molecule 2##AK290031|FAIM2|23017|Fas apoptotic inhibitory molecule 2##AF190461|FAIM2|23017|Fas apoptotic inhibitory molecule 2##NM_012306|FAIM2|23017|Fas apoptotic inhibitory molecule 2	0.0	0.0	
chr4	36244952	36245129	reg1004839.p2	6.968	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-5522581	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-5522846	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-5523041	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	997	-	AK131492 NM_001136536 AK304357 AK316523	38206	+	BC157885 NM_001170700	40603	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	1.039704	0.0	
chr12	54399826	54399990	reg1005383.p1	6.967	+	NM_006897 BC053894 AK315194 AK000445 AB464582 CU691056 BC032769	-5983	+	AK313759 NM_017409 BC001293 AB464578 AF255675 BT009921	-20922	+	NM_014212 AK291946 BC001543 AJ000041 CU674756	-32941	+	TSC_hg19_v1_chr12_+_54402796 BC053898 NM_022658 AK290959	2938	+	NM_014620 NM_153693 TSC_hg19_v1_chr12_+_54410671 X07495	10769	+	BC034922 BC044635 M16938 TSC_hg19_v1_chr12_+_54410917 AK314829	11016	+	NM_006897|HOXC9|3225|homeobox C9##BC053894|HOXC9|3225|homeobox C9##AK315194|HOXC9|3225|homeobox C9##AK000445|HOXC9|3225|homeobox C9##BC032769|HOXC9|3225|homeobox C9##AK313759|HOXC10|3226|homeobox C10##NM_017409|HOXC10|3226|homeobox C10##BC001293|HOXC10|3226|homeobox C10##AF255675|HOXC10|3226|homeobox C10##BT009921|HOXC10|3226|homeobox C10##NM_014212|HOXC11|3227|homeobox C11##AK291946|HOXC11|3227|homeobox C11##BC001543|HOXC11|3227|homeobox C11##AJ000041|HOXC11|3227|homeobox C11##BC053898|HOXC8|3224|homeobox C8##NM_022658|HOXC8|3224|homeobox C8##AK290959|HOXC8|3224|homeobox C8##NM_014620|HOXC4|3221|homeobox C4##NM_153693|HOXC6|3223|homeobox C6##X07495|HOXC4|3221|homeobox C4##BC034922|HOXC5|3222|homeobox C5##BC044635|HOXC5|3222|homeobox C5##M16938|HOXC6|3223|homeobox C6##AK314829|HOXC6|3223|homeobox C6	0.0	0.266623	CTCF.p2:3:0.267
chr14	51206651	51206820	reg1004555.p1	6.967	+	TSC_hg19_v1_chr14_-_51135048 AK225896 AK095903	-71667	-	BC020537 TSC_hg19_v1_chr14_-_51135025 BC006385 NM_021818 AK021500	-71709	-	AJ292969 AK023071 TSC_hg19_v1_chr14_-_51135016 AK290883	-71795	-	AB046785 TSC_hg19_v1_chr14_-_51297860 BC065521 AF223937 AF223938 AF223939 AF302773 AY736182 NM_016350 NM_020921 NM_182944 NM_182946	91085	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	132143	+	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	204447	-	AK225896|SAV1|60485|salvador homolog 1 (Drosophila)##AK095903|SAV1|60485|salvador homolog 1 (Drosophila)##BC020537|SAV1|60485|salvador homolog 1 (Drosophila)##BC006385|SAV1|60485|salvador homolog 1 (Drosophila)##NM_021818|SAV1|60485|salvador homolog 1 (Drosophila)##AK021500|SAV1|60485|salvador homolog 1 (Drosophila)##AJ292969|SAV1|60485|salvador homolog 1 (Drosophila)##AK023071|SAV1|60485|salvador homolog 1 (Drosophila)##AK290883|SAV1|60485|salvador homolog 1 (Drosophila)##AB046785|NIN|51199|ninein (GSK3B interacting protein)##BC065521|NIN|51199|ninein (GSK3B interacting protein)##AF223937|NIN|51199|ninein (GSK3B interacting protein)##AF223938|NIN|51199|ninein (GSK3B interacting protein)##AF223939|NIN|51199|ninein (GSK3B interacting protein)##AF302773|NIN|51199|ninein (GSK3B interacting protein)##AY736182|NIN|51199|ninein (GSK3B interacting protein)##NM_016350|NIN|51199|ninein (GSK3B interacting protein)##NM_020921|NIN|51199|ninein (GSK3B interacting protein)##NM_182944|NIN|51199|ninein (GSK3B interacting protein)##NM_182946|NIN|51199|ninein (GSK3B interacting protein)##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver	0.08727	0.0	
chr16	5026193	5026341	reg1005889.p2	6.967	+	AB007880 NM_014692	-17950	+	AF013717 BC114620 AF001691 NM_002705 TSC_hg19_v1_chr16_-_4987144	-39163	-	NM_016936 AF108461	-124122	+	TSC_hg19_v1_chr16_+_5083673 AK055222	57419	+	TSC_hg19_v1_chr16_-_5083927 AF187072 AK026122 BC012194	57654	-	TSC_hg19_v1_chr16_-_5083937 AK127952 AK314320 AK302916 AK025570 NM_016256	57670	-	AB007880|SEC14L5|9717|SEC14-like 5 (S. cerevisiae)##NM_014692|SEC14L5|9717|SEC14-like 5 (S. cerevisiae)##AF013717|PPL|5493|periplakin##BC114620|PPL|5493|periplakin##AF001691|PPL|5493|periplakin##NM_002705|PPL|5493|periplakin##NM_016936|UBN1|29855|ubinuclein 1##AF108461|UBN1|29855|ubinuclein 1##AK055222|LOC100507589|100507589|uncharacterized LOC100507589##AF187072|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK026122|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##BC012194|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK127952|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK314320|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK302916|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK025570|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##NM_016256|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	0.0	0.0	
chr22	18189050	18189193	reg1003961.p1	6.967	+	TSC_hg19_v1_chr22_+_18121576 AL831982 BC007658	-67556	+	CR456521 TSC_hg19_v1_chr22_+_18121529 NM_015367 AK056248 AK294286 AK314489 AK291449	-67631	+	TSC_hg19_v1_chr22_+_18111627 AF246665	-77482	+	AF250233 AK094795 BC036364 NM_001244572 NM_197966 TSC_hg19_v1_chr22_-_18256811	67659	-	D89803 TSC_hg19_v1_chr22_-_18257188 AY005151 EU678292	68053	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	68086	-	AL831982|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##BC007658|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##CR456521|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##NM_015367|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK056248|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK294286|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK314489|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK291449|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AF246665|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AF250233|BID|637|BH3 interacting domain death agonist##AK094795|BID|637|BH3 interacting domain death agonist##BC036364|BID|637|BH3 interacting domain death agonist##NM_001244572|BID|637|BH3 interacting domain death agonist##NM_197966|BID|637|BH3 interacting domain death agonist##D89803|BID|637|BH3 interacting domain death agonist##AY005151|BID|637|BH3 interacting domain death agonist##EU678292|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist	0.996862	0.0	denovo_WM_7:-18:0.889
chr3	138365484	138365638	reg1004233.p2	6.967	+	AK001444 NM_018147	-37643	+	NM_001033030 NM_001033031 NM_001033032 TSC_hg19_v1_chr3_+_138327638 BC012478	-37945	+	AK125477 TSC_hg19_v1_chr3_+_138327450	-38113	+	AB384841 BC114432 NM_006219 S67334	112623	-	BC062549 NM_023067	300420	-	AK125319 NM_001040061	300514	+	AK001444|FAIM|55179|Fas apoptotic inhibitory molecule##NM_018147|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033030|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033031|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033032|FAIM|55179|Fas apoptotic inhibitory molecule##BC012478|FAIM|55179|Fas apoptotic inhibitory molecule##AK125477|FAIM|55179|Fas apoptotic inhibitory molecule##BC114432|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##NM_006219|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##S67334|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##BC062549|FOXL2|668|forkhead box L2##NM_023067|FOXL2|668|forkhead box L2##AK125319|C3orf72|401089|chromosome 3 open reading frame 72##NM_001040061|C3orf72|401089|chromosome 3 open reading frame 72	0.989367	0.0	denovo_WM_7:39:0.459	denovo_WM_7:41:0.240
chr8	23153738	23153918	reg1005713.p1	6.967	+	TSC_hg19_v1_chr8_+_23145630 AL050297 BC032421	-8150	+	TSC_hg19_v1_chr8_+_23145620 NM_001136108 AK293465	-8231	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	-49586	+	AK098436 TSC_hg19_v1_chr8_-_23177535	23680	-	BC000594 TSC_hg19_v1_chr8_-_23261609	107773	-	TSC_hg19_v1_chr8_-_23261631 U89942	107800	-	AL050297|R3HCC1|203069|R3H domain and coiled-coil containing 1##BC032421|R3HCC1|203069|R3H domain and coiled-coil containing 1##NM_001136108|R3HCC1|203069|R3H domain and coiled-coil containing 1##AK293465|R3HCC1|203069|R3H domain and coiled-coil containing 1##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7##AK098436|LOXL2|4017|lysyl oxidase-like 2##BC000594|LOXL2|4017|lysyl oxidase-like 2##U89942|LOXL2|4017|lysyl oxidase-like 2	0.516077	0.155605	denovo_WM_7:-62:0.348
chr13	41110412	41110551	reg1003384.p1	6.966	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-880620	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-933119	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-933154	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	130231	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	234811	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	234851	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	2.985995	0.0	denovo_WM_7:71:0.745	denovo_WM_7:-97:0.499
chr6	108301666	108301772	reg1004849.p1	6.966	+	TSC_hg19_v1_chr6_-_108279413 NM_007214	-22273	-	TSC_hg19_v1_chr6_-_108279378 BC023598	-22327	-	TSC_hg19_v1_chr6_-_108279366 BC009066	-22350	-	TSC_hg19_v1_chr6_-_108395868 AK075012	94144	-	TSC_hg19_v1_chr6_-_108395920 BC068581	94201	-	TSC_hg19_v1_chr6_-_108395924 AF533891 AY358795 BC059412 AK129854	94211	-	NM_007214|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC023598|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC009066|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK075012|OSTM1|28962|osteopetrosis associated transmembrane protein 1##BC068581|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AF533891|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AY358795|OSTM1|28962|osteopetrosis associated transmembrane protein 1##BC059412|OSTM1|28962|osteopetrosis associated transmembrane protein 1##AK129854|OSTM1|28962|osteopetrosis associated transmembrane protein 1	0.968819	0.0	denovo_WM_7:26:0.915
chr1	245108652	245108829	reg1005548.p1	6.965	+	TSC_hg19_v1_chr1_-_245027820 AF068846 NM_004501 NM_031844	-80916	-	TSC_hg19_v1_chr1_-_245027806 AK126868	-80941	-	TSC_hg19_v1_chr1_-_245027786 AK297119	-80957	-	TSC_hg19_v1_chr1_+_245133091 NM_032328	24378	+	AK090927 AX746687 TSC_hg19_v1_chr1_+_245133411	24622	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	24890	+	AF068846|HNRNPU|3192|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)##NM_004501|HNRNPU|3192|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)##NM_031844|HNRNPU|3192|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)##AK126868|HNRNPU|3192|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)##AK297119|HNRNPU|3192|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)##NM_032328|EFCAB2|84288|EF-hand calcium binding domain 2##AK090927|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2	0.326036	0.0	denovo_WM_7:25:0.232
chr13	24538217	24538340	reg1005112.p2	6.965	+	NM_001007537 CU691876 BC137004 BC137006 BC144450	-67120	-	NM_001135816 BC142999	-74686	+	TSC_hg19_v1_chr13_-_24463540 DQ893610 DQ896839 AK291923 U80034 AK225290 AK308908 BC009934 NM_005932	-74764	-	BX648445 TSC_hg19_v1_chr13_+_24553892	15587	+	TSC_hg19_v1_chr13_+_24553943 BX648244 BC043582	15655	+	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	196617	+	NM_001007537|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137004|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137006|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC144450|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##NM_001135816|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC142999|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##DQ893610|MIPEP|4285|mitochondrial intermediate peptidase##DQ896839|MIPEP|4285|mitochondrial intermediate peptidase##AK291923|MIPEP|4285|mitochondrial intermediate peptidase##U80034|MIPEP|4285|mitochondrial intermediate peptidase##AK225290|MIPEP|4285|mitochondrial intermediate peptidase##AK308908|MIPEP|4285|mitochondrial intermediate peptidase##BC009934|MIPEP|4285|mitochondrial intermediate peptidase##NM_005932|MIPEP|4285|mitochondrial intermediate peptidase##BX648244|SPATA13|221178|spermatogenesis associated 13##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13	0.277176	0.0	denovo_WM_7:-22:0.277
chr12	120970695	120970875	reg1005016.p1	6.964	+	BC004916 AB590926 TSC_hg19_v1_chr12_-_120966955 BX647562 AK057777 AK222610 AK225242 BC107874 AK315681 EU700459 AK298214 NM_032314 AK293656	-3824	-	TSC_hg19_v1_chr12_+_120933916 BC100289 U32944 BC104244 BC104245	-36851	+	TSC_hg19_v1_chr12_+_120933915 AK311790 AK309022	-36872	+	TSC_hg19_v1_chr12_+_120972153 NM_014868 AK315558	1343	+	AK094011 AK097807 TSC_hg19_v1_chr12_+_120972158 AK126274 AK301608 AB027196 BC016622 BC031596 BC101709 BC101715 BC143493 BT006974 CU677651 D87451 DQ890634 DQ893805	1715	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	48403	-	BC004916|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BX647562|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK057777|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK222610|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK225242|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BC107874|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK315681|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##EU700459|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK298214|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##NM_032314|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK293656|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BC100289|DYNLL1|8655|dynein, light chain, LC8-type 1##U32944|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104244|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104245|DYNLL1|8655|dynein, light chain, LC8-type 1##AK311790|DYNLL1|8655|dynein, light chain, LC8-type 1##NM_014868|RNF10|9921|ring finger protein 10##AK315558|RNF10|9921|ring finger protein 10##AK094011|RNF10|9921|ring finger protein 10##AK097807|RNF10|9921|ring finger protein 10##AK126274|RNF10|9921|ring finger protein 10##AK301608|RNF10|9921|ring finger protein 10##AB027196|RNF10|9921|ring finger protein 10##BC016622|RNF10|9921|ring finger protein 10##BC031596|RNF10|9921|ring finger protein 10##BC101709|RNF10|9921|ring finger protein 10##BC101715|RNF10|9921|ring finger protein 10##BC143493|RNF10|9921|ring finger protein 10##BT006974|RNF10|9921|ring finger protein 10##D87451|RNF10|9921|ring finger protein 10##DQ890634|RNF10|9921|ring finger protein 10##DQ893805|RNF10|9921|ring finger protein 10##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)	0.0	0.0	
chr16	19221962	19222142	reg1000580.p2	6.964	+	TSC_hg19_v1_chr16_+_19179561 NM_016524 BC004518 AF220560 AB527504 CU678742	-42301	+	TSC_hg19_v1_chr16_+_19125253 AK096327 NM_001034841	-96804	+	TSC_hg19_v1_chr16_+_19079232 AL136647 NM_001190983 BC043272	-142787	+	BC070101 NM_001105248 NM_001105249	200004	+	AY236494 NM_024780 BC038118 AK097718 BC027602 AK131202	245752	+	AY463154 BC014981 TSC_hg19_v1_chr16_-_19533421 AF306698 BC025273 BC001538 AF212862 BC012153 AK312912 NM_016641	311324	-	NM_016524|SYT17|51760|synaptotagmin XVII##BC004518|SYT17|51760|synaptotagmin XVII##AF220560|SYT17|51760|synaptotagmin XVII##AK096327|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##NM_001034841|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##AL136647|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_001190983|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC043272|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC070101|TMC5|79838|transmembrane channel-like 5##NM_001105248|TMC5|79838|transmembrane channel-like 5##NM_001105249|TMC5|79838|transmembrane channel-like 5##AY236494|TMC5|79838|transmembrane channel-like 5##NM_024780|TMC5|79838|transmembrane channel-like 5##BC038118|TMC5|79838|transmembrane channel-like 5##AK097718|TMC5|79838|transmembrane channel-like 5##BC027602|TMC5|79838|transmembrane channel-like 5##AK131202|TMC5|79838|transmembrane channel-like 5##AY463154|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC014981|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF306698|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC025273|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC001538|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF212862|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC012153|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AK312912|GDE1|51573|glycerophosphodiester phosphodiesterase 1##NM_016641|GDE1|51573|glycerophosphodiester phosphodiesterase 1	0.0	0.0	
chr17	42219764	42219920	reg1005950.p3	6.964	+	TSC_hg19_v1_chr17_+_42219388 BC000121 AK021656	-439	+	TSC_hg19_v1_chr17_+_42219306 AL834295	-508	+	TSC_hg19_v1_chr17_+_42219297 NM_001171251 NM_024032 AK291924	-576	+	AK054727 NM_080863 AK314595 TSC_hg19_v1_chr17_+_42248081 BC118584 BC118585 BC075088 AY557346	28273	+	TSC_hg19_v1_chr17_-_42264070 AK055685	44206	-	TSC_hg19_v1_chr17_-_42264076 NM_178542	44249	-	BC000121|C17orf53|78995|chromosome 17 open reading frame 53##AK021656|C17orf53|78995|chromosome 17 open reading frame 53##AL834295|C17orf53|78995|chromosome 17 open reading frame 53##NM_001171251|C17orf53|78995|chromosome 17 open reading frame 53##NM_024032|C17orf53|78995|chromosome 17 open reading frame 53##AK291924|C17orf53|78995|chromosome 17 open reading frame 53##AK054727|ASB16|92591|ankyrin repeat and SOCS box containing 16##NM_080863|ASB16|92591|ankyrin repeat and SOCS box containing 16##AK314595|ASB16|92591|ankyrin repeat and SOCS box containing 16##BC118584|ASB16|92591|ankyrin repeat and SOCS box containing 16##BC118585|ASB16|92591|ankyrin repeat and SOCS box containing 16##BC075088|ASB16|92591|ankyrin repeat and SOCS box containing 16##AY557346|ASB16|92591|ankyrin repeat and SOCS box containing 16##AK055685|C17orf65|339201|chromosome 17 open reading frame 65##NM_178542|C17orf65|339201|chromosome 17 open reading frame 65	0.99936	0.0	
chr4	185745929	185746109	reg1005525.p2	6.964	+	TSC_hg19_v1_chr4_-_185726866 AK296826	-19116	-	DQ907910 DQ907911 TSC_hg19_v1_chr4_-_185655244 BC067802 AK292297 BC141854 AF469667 BC131556 NM_024629	-90766	-	TSC_hg19_v1_chr4_+_185570923 BC064600 AK307317	-175090	+	TSC_hg19_v1_chr4_-_185747123 L09229 AK292798	1082	-	TSC_hg19_v1_chr4_-_185747201 AK303486 NM_001995	1215	-	BC140795 BC144567 BC144568 BC144569 NM_001029887	194019	+	AK296826|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##DQ907910|MLF1IP|79682|MLF1 interacting protein##DQ907911|MLF1IP|79682|MLF1 interacting protein##BC067802|MLF1IP|79682|MLF1 interacting protein##AK292297|MLF1IP|79682|MLF1 interacting protein##BC141854|MLF1IP|79682|MLF1 interacting protein##AF469667|MLF1IP|79682|MLF1 interacting protein##BC131556|MLF1IP|79682|MLF1 interacting protein##NM_024629|MLF1IP|79682|MLF1 interacting protein##BC064600|CCDC111|201973|coiled-coil domain containing 111##AK307317|CCDC111|201973|coiled-coil domain containing 111##L09229|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##AK292798|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##AK303486|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##NM_001995|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##BC140795|HELT|391723|helt bHLH transcription factor##BC144567|HELT|391723|helt bHLH transcription factor##BC144569|HELT|391723|helt bHLH transcription factor##NM_001029887|HELT|391723|helt bHLH transcription factor	0.987629	0.0	denovo_WM_7:-31:0.201	denovo_WM_7:-33:0.503
chr19	4264321	4264487	reg1001640.p1	6.963	+	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	-17314	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-34884	+	NM_133475	-81054	+	AK056268 NM_020209	14193	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	38000	-	NM_024333 TSC_hg19_v1_chr19_+_4304594 AK315661 AK295523 AK303606 AY032617 BC003124 AK021750 AF316829 DQ891833 DQ895020	40261	+	AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_024333|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK315661|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK295523|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK303606|FSD1|79187|fibronectin type III and SPRY domain containing 1##AY032617|FSD1|79187|fibronectin type III and SPRY domain containing 1##BC003124|FSD1|79187|fibronectin type III and SPRY domain containing 1##AK021750|FSD1|79187|fibronectin type III and SPRY domain containing 1##AF316829|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ891833|FSD1|79187|fibronectin type III and SPRY domain containing 1##DQ895020|FSD1|79187|fibronectin type III and SPRY domain containing 1	1.384404	0.0	denovo_WM_7:92:0.461	denovo_WM_7:93:0.396
chr10	20283091	20283271	reg1005796.p1	6.962	+	TSC_hg19_v1_chr10_+_20105360 AK304591 AY358486 NM_032812	-177808	+	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	-1334760	+	BC033534 TSC_hg19_v1_chr10_-_18948215	-1334984	-	NM_006393 Y16241	903349	-	BC140744 BC144447 NM_001010896 NM_001177483	1152306	-	AB209311 TSC_hg19_v1_chr10_-_21462987	1179806	-	AK304591|PLXDC2|84898|plexin domain containing 2##AY358486|PLXDC2|84898|plexin domain containing 2##NM_032812|PLXDC2|84898|plexin domain containing 2##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B##NM_006393|NEBL|10529|nebulette##Y16241|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113##AB209311|NEBL|10529|nebulette	2.685142	0.0	denovo_WM_7:68:0.543	denovo_WM_7:83:0.532
chr17	55540638	55540771	reg1004947.p1	6.962	+	AK093888 AX748353 NM_170721	-206331	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-206731	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-377561	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	386700	-	AK000746 NM_017949	440045	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	491972	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	0.0	0.0	
chr18	32820305	32820444	reg1004938.p1	6.962	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	-198918	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-262074	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-263415	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	672	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	49798	-	TSC_hg19_v1_chr18_+_32870279 AK023456 AF159567 AK094216	49930	+	NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK023456|ZNF271|10778|zinc finger protein 271##AF159567|ZNF271|10778|zinc finger protein 271##AK094216|ZNF271|10778|zinc finger protein 271	0.998096	0.0	
chr9	71511129	71511309	reg1005433.p1	6.962	+	CU680482 TSC_hg19_v1_chr9_+_71395147	-116103	+	TSC_hg19_v1_chr9_+_71394980 NM_138333 BC013062 AK126379 AK304099	-116268	+	TSC_hg19_v1_chr9_+_71320206 AK295587 AK292734 NM_003558	-190843	+	TSC_hg19_v1_chr9_-_71590760 AK057188	79539	-	DQ890764 DQ893927 AB463461 BC039888 NM_002732	117804	-	NM_000144 NM_001161706 NM_181425	139259	+	NM_138333|FAM122A|116224|family with sequence similarity 122A##BC013062|FAM122A|116224|family with sequence similarity 122A##AK126379|FAM122A|116224|family with sequence similarity 122A##AK295587|PIP5K1B|8395|phosphatidylinositol-4-phosphate 5-kinase, type I, beta##AK292734|PIP5K1B|8395|phosphatidylinositol-4-phosphate 5-kinase, type I, beta##NM_003558|PIP5K1B|8395|phosphatidylinositol-4-phosphate 5-kinase, type I, beta##DQ890764|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##DQ893927|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##BC039888|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##NM_002732|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##NM_000144|FXN|2395|frataxin##NM_001161706|FXN|2395|frataxin##NM_181425|FXN|2395|frataxin	0.997037	0.0	denovo_WM_7:53:0.260	denovo_WM_7:54:0.670
chr8	104385606	104385746	reg1005473.p1	6.961	+	BC014245 NM_138455 AY136825 TSC_hg19_v1_chr8_+_104383792	-1877	+	TSC_hg19_v1_chr8_+_104383774 AK130063 BC021025 AY358914 AK300273	-1936	+	NM_001164616 NM_003506 TSC_hg19_v1_chr8_+_104311103 AK299341 AK296824 BC060836 BC036106 AB012911 AK304092 AK316544	-74585	+	AK027799 NM_015420 AK074725	41282	+	TSC_hg19_v1_chr8_-_104427269 BC021893 AF283645 AK027787 AK300748	41611	-	TSC_hg19_v1_chr8_-_104427336 AK125492 AK027531	41653	-	BC014245|CTHRC1|115908|collagen triple helix repeat containing 1##NM_138455|CTHRC1|115908|collagen triple helix repeat containing 1##AY136825|CTHRC1|115908|collagen triple helix repeat containing 1##AK130063|CTHRC1|115908|collagen triple helix repeat containing 1##BC021025|CTHRC1|115908|collagen triple helix repeat containing 1##AY358914|CTHRC1|115908|collagen triple helix repeat containing 1##AK300273|CTHRC1|115908|collagen triple helix repeat containing 1##NM_001164616|FZD6|8323|frizzled family receptor 6##NM_003506|FZD6|8323|frizzled family receptor 6##AK299341|FZD6|8323|frizzled family receptor 6##AK296824|FZD6|8323|frizzled family receptor 6##BC060836|FZD6|8323|frizzled family receptor 6##BC036106|FZD6|8323|frizzled family receptor 6##AB012911|FZD6|8323|frizzled family receptor 6##AK304092|FZD6|8323|frizzled family receptor 6##AK316544|FZD6|8323|frizzled family receptor 6##AK027799|DCAF13|25879|DDB1 and CUL4 associated factor 13##NM_015420|DCAF13|25879|DDB1 and CUL4 associated factor 13##AK074725|DCAF13|25879|DDB1 and CUL4 associated factor 13##BC021893|SLC25A32|81034|solute carrier family 25, member 32##AF283645|SLC25A32|81034|solute carrier family 25, member 32##AK027787|SLC25A32|81034|solute carrier family 25, member 32##AK300748|SLC25A32|81034|solute carrier family 25, member 32##AK125492|SLC25A32|81034|solute carrier family 25, member 32##AK027531|SLC25A32|81034|solute carrier family 25, member 32	0.388852	0.998696	denovo_WM_7:1:0.217	CTCF.p2:-57:0.999
chr19	1897169	1897349	reg1005430.p1	6.960	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-11755	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-11788	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-11814	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	8093	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	8146	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	43904	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	2.993729	0.0	denovo_WM_7:1:0.269	denovo_WM_7:2:0.359	denovo_WM_7:-14:0.289	denovo_WM_7:-15:0.378	denovo_WM_7:55:0.494	denovo_WM_7:56:0.494
chr14	39643923	39644043	reg1005823.p1	6.959	+	AK310730 TSC_hg19_v1_chr14_-_39639538 AK294339 AL833179 BC047328 BX161510 AK315900 BX248013 AK056690 NM_001079537 NM_177452 BC030604	-4411	-	AF027150 NM_001009182 NM_001009183 NM_003616 BC028095 BC104968 AK313947 AB037701 AB037702 AB037703	-60516	+	TSC_hg19_v1_chr14_-_39572440 AK299862 BC036649 NM_006364 AK303485	-71550	-	TSC_hg19_v1_chr14_+_39644403 NM_002687 AK292579 AK223612 U77718 BC062602 Y09703 Y10351	446	+	AK304622 TSC_hg19_v1_chr14_+_39649841	5793	+	AK314069 BX648228 NM_054024 BC035981 BC130537 BC130563 AB527370 AM393252 AM393582 HQ258350 AF390175	59235	+	AK310730|TRAPPC6B|122553|trafficking protein particle complex 6B##AK294339|TRAPPC6B|122553|trafficking protein particle complex 6B##AL833179|TRAPPC6B|122553|trafficking protein particle complex 6B##BC047328|TRAPPC6B|122553|trafficking protein particle complex 6B##BX161510|TRAPPC6B|122553|trafficking protein particle complex 6B##AK315900|TRAPPC6B|122553|trafficking protein particle complex 6B##BX248013|TRAPPC6B|122553|trafficking protein particle complex 6B##AK056690|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_001079537|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_177452|TRAPPC6B|122553|trafficking protein particle complex 6B##BC030604|TRAPPC6B|122553|trafficking protein particle complex 6B##AF027150|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009182|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009183|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_003616|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC028095|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC104968|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK313947|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037701|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037702|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037703|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK299862|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##BC036649|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_006364|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK303485|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_002687|PNN|5411|pinin, desmosome associated protein##AK292579|PNN|5411|pinin, desmosome associated protein##AK223612|PNN|5411|pinin, desmosome associated protein##U77718|PNN|5411|pinin, desmosome associated protein##BC062602|PNN|5411|pinin, desmosome associated protein##Y09703|PNN|5411|pinin, desmosome associated protein##AK304622|PNN|5411|pinin, desmosome associated protein##AK314069|MIA2|117153|melanoma inhibitory activity 2##BX648228|MIA2|117153|melanoma inhibitory activity 2##NM_054024|MIA2|117153|melanoma inhibitory activity 2##BC035981|MIA2|117153|melanoma inhibitory activity 2##BC130537|MIA2|117153|melanoma inhibitory activity 2##BC130563|MIA2|117153|melanoma inhibitory activity 2##AM393252|MIA2|117153|melanoma inhibitory activity 2##AM393582|MIA2|117153|melanoma inhibitory activity 2##HQ258350|MIA2|117153|melanoma inhibitory activity 2##AF390175|MIA2|117153|melanoma inhibitory activity 2	0.878197	0.0	denovo_WM_7:-35:0.554
chr5	32020638	32020744	reg1004859.p2	6.959	+	NM_178140	-221661	+	TSC_hg19_v1_chr5_+_31639424 AB002298	-381221	+	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	-488256	+	TSC_hg19_v1_chr5_+_32173523 AK055939	152825	+	TSC_hg19_v1_chr5_-_32174291 AJ296152	153577	-	TSC_hg19_v1_chr5_-_32174327 BC063586	153649	-	NM_178140|PDZD2|23037|PDZ domain containing 2##AB002298|PDZD2|23037|PDZ domain containing 2##NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AK055939|LOC153546|153546|uncharacterized LOC153546##AJ296152|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##BC063586|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)	0.993489	0.0	denovo_WM_7:66:0.214	denovo_WM_7:72:0.502
chr9	42255661	42255773	reg1003638.p4	6.958	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-300803	-	BC040528 NM_001113541 NM_015667	-755039	+	BC040528 NM_001113541 NM_015667 NM_001242613	-928338	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	112641	+	NM_001099279 NM_199244	461516	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	877770	-	BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2	0.986342	0.0	
chr4	3539453	3539541	reg1004872.p2	6.957	+	TSC_hg19_v1_chr4_-_3534154 BC105074 BC112067 AK292321 NM_002337	-5309	-	AB463840 AK310598 M63959 TSC_hg19_v1_chr4_-_3534150 AK312698 AK222527 AK222504 AK310851 BX647984	-5352	-	NM_001164673 NM_173660 AK091037 AX746744 BC141852 BC131544 AB220918	-74430	+	TSC_hg19_v1_chr4_+_3768111 BC142625	228621	+	J03853 NM_000683	228798	+	BC044637 TSC_hg19_v1_chr4_-_3957162	417658	-	BC105074|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##BC112067|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##AK292321|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##NM_002337|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##AK310598|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##M63959|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##AK312698|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##AK222527|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##AK222504|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##AK310851|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##BX647984|LRPAP1|4043|low density lipoprotein receptor-related protein associated protein 1##NM_001164673|DOK7|285489|docking protein 7##NM_173660|DOK7|285489|docking protein 7##AK091037|DOK7|285489|docking protein 7##BC141852|DOK7|285489|docking protein 7##BC131544|DOK7|285489|docking protein 7##AB220918|DOK7|285489|docking protein 7##BC142625|ADRA2C|152|adrenergic, alpha-2C-, receptor##J03853|ADRA2C|152|adrenergic, alpha-2C-, receptor##NM_000683|ADRA2C|152|adrenergic, alpha-2C-, receptor##BC044637|FAM86EP|348926|family with sequence similarity 86, member A pseudogene	3.74481	0.0	denovo_WM_7:-34:0.690	denovo_WM_7:-53:0.707	denovo_WM_7:79:0.403	denovo_WM_7:80:0.315	denovo_WM_7:94:0.438	denovo_WM_7:95:0.380
chr1	15066102	15066251	reg1005251.p1	6.955	+	TSC_hg19_v1_chr1_+_14925186 AB028949 AY505119 NM_015209 NM_201628	-140982	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	-990235	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	-990253	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	184543	+	AY505121 NM_001018001	190119	+	AY505122 NM_001017999	206238	+	AB028949|KAZN|23254|kazrin, periplakin interacting protein##AY505119|KAZN|23254|kazrin, periplakin interacting protein##NM_015209|KAZN|23254|kazrin, periplakin interacting protein##NM_201628|KAZN|23254|kazrin, periplakin interacting protein##AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein##AY505122|KAZN|23254|kazrin, periplakin interacting protein##NM_001017999|KAZN|23254|kazrin, periplakin interacting protein	0.385217	0.0	
chr17	42184970	42185118	reg1005705.p2	6.955	+	NM_138387 TSC_hg19_v1_chr17_+_42148102 BC021574 BC062596 AK091417 AX746969 BC002494	-36845	+	BC066298 NM_152344	-40058	-	TSC_hg19_v1_chr17_-_42144008 AK055218 BC044587 BC105288	-41028	-	TSC_hg19_v1_chr17_-_42201007 AK294760 AB011172	15938	-	TSC_hg19_v1_chr17_-_42201010 NM_001015053 NM_005474	15972	-	TSC_hg19_v1_chr17_+_42219297 NM_001171251 NM_024032 AK291924	34222	+	NM_138387|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC021574|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC062596|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC002494|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC066298|LSM12|124801|LSM12 homolog (S. cerevisiae)##NM_152344|LSM12|124801|LSM12 homolog (S. cerevisiae)##AK055218|LSM12|124801|LSM12 homolog (S. cerevisiae)##BC044587|LSM12|124801|LSM12 homolog (S. cerevisiae)##BC105288|LSM12|124801|LSM12 homolog (S. cerevisiae)##AK294760|HDAC5|10014|histone deacetylase 5##AB011172|HDAC5|10014|histone deacetylase 5##NM_001015053|HDAC5|10014|histone deacetylase 5##NM_005474|HDAC5|10014|histone deacetylase 5##NM_001171251|C17orf53|78995|chromosome 17 open reading frame 53##NM_024032|C17orf53|78995|chromosome 17 open reading frame 53##AK291924|C17orf53|78995|chromosome 17 open reading frame 53	0.998675	0.0	
chr11	110209567	110209690	reg1004739.p1	6.954	+	TSC_hg19_v1_chr11_-_110167340 BC002626 BC020751 BC047109 AK312903 AK316061 DQ916738 DQ916739 DQ916740 DQ916741 DQ916742 NM_002906	-42315	-	NM_033390 AK295437 TSC_hg19_v1_chr11_+_109964174	-245498	+	AK095101 TSC_hg19_v1_chr11_+_109963524	-246100	+	TSC_hg19_v1_chr11_+_110300641 NM_004109 BC010284 BC017063 J03548 AB096243 M18003 M34788 AB463632 BT006681	91088	+	AY496266 TSC_hg19_v1_chr11_-_110582834	373175	-	TSC_hg19_v1_chr11_-_110582887 AB037812	373297	-	BC002626|RDX|5962|radixin##BC020751|RDX|5962|radixin##BC047109|RDX|5962|radixin##AK312903|RDX|5962|radixin##AK316061|RDX|5962|radixin##DQ916738|RDX|5962|radixin##DQ916739|RDX|5962|radixin##DQ916740|RDX|5962|radixin##DQ916741|RDX|5962|radixin##DQ916742|RDX|5962|radixin##NM_002906|RDX|5962|radixin##NM_033390|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AK295437|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AK095101|ZC3H12C|85463|zinc finger CCCH-type containing 12C##NM_004109|FDX1|2230|ferredoxin 1##BC010284|FDX1|2230|ferredoxin 1##BC017063|FDX1|2230|ferredoxin 1##J03548|FDX1|2230|ferredoxin 1##AB096243|FDX1|2230|ferredoxin 1##M18003|FDX1|2230|ferredoxin 1##M34788|FDX1|2230|ferredoxin 1##BT006681|FDX1|2230|ferredoxin 1##AY496266|ARHGAP20|57569|Rho GTPase activating protein 20##AB037812|ARHGAP20|57569|Rho GTPase activating protein 20	0.997709	0.0	denovo_WM_7:59:0.449	denovo_WM_7:60:0.449
chr16	18054290	18054399	reg1003324.p1	6.954	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-489539	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-1727814	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-1727856	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	519047	-	TSC_hg19_v1_chr16_-_18798077 AK127316	743752	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	747311	-	AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a	0.996868	0.0	denovo_WM_7:-55:0.985
chr13	91709136	91709316	reg1000320.p3	6.953	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-3384357	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-5335787	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-7252726	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	341678	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	2170201	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	3422600	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	0.0	0.0	
chr2	197042953	197043063	reg1005578.p2	6.953	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-6690	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-6729	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-109513	-	BC117194 BC117198 AB037722 NM_020760	414284	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	461349	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	621405	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	1.996884	0.0	denovo_WM_7:-4:0.314	denovo_WM_7:-5:0.314	denovo_WM_7:-6:0.314	denovo_WM_7:-93:0.348	denovo_WM_7:-96:0.549
chr5	93385252	93385384	reg1004398.p1	6.953	+	CU688688 EU446850 BC029532 AB527965 AK098546 NM_153216	-308066	-	AK309742 TSC_hg19_v1_chr5_-_92957232	-428107	-	TSC_hg19_v1_chr5_+_92920609 BC004154 AB463944 HQ709180 HQ709181 HQ709182 HQ709183 X16155	-464650	+	TSC_hg19_v1_chr5_-_93447341 AL136630 AK312930 AK295879 AK296683 AK296986 AK295127 NM_001163417 NM_001163418 NM_032042	62002	-	TSC_hg19_v1_chr5_-_93954299 BX648338 BC035515 AK308195 NM_001145678 NM_173665	568939	-	BC070332 AK299080 AK297452 CR936768 AL050298 NM_032290 BC054885 BC107571	569055	+	EU446850|POU5F2|134187|POU domain class 5, transcription factor 2##BC029532|POU5F2|134187|POU domain class 5, transcription factor 2##AK098546|POU5F2|134187|POU domain class 5, transcription factor 2##NM_153216|POU5F2|134187|POU domain class 5, transcription factor 2##BC004154|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709180|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709181|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##HQ709182|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709183|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##X16155|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##AL136630|FAM172A|83989|family with sequence similarity 172, member A##AK312930|FAM172A|83989|family with sequence similarity 172, member A##AK295879|FAM172A|83989|family with sequence similarity 172, member A##AK296683|FAM172A|83989|family with sequence similarity 172, member A##AK296986|FAM172A|83989|family with sequence similarity 172, member A##AK295127|FAM172A|83989|family with sequence similarity 172, member A##NM_001163417|FAM172A|83989|family with sequence similarity 172, member A##NM_001163418|FAM172A|83989|family with sequence similarity 172, member A##NM_032042|FAM172A|83989|family with sequence similarity 172, member A##BX648338|KIAA0825|285600|KIAA0825##BC035515|KIAA0825|285600|KIAA0825##AK308195|KIAA0825|285600|KIAA0825##NM_001145678|KIAA0825|285600|KIAA0825##NM_173665|KIAA0825|285600|KIAA0825##BC070332|ANKRD32|84250|ankyrin repeat domain 32##AK299080|ANKRD32|84250|ankyrin repeat domain 32##AK297452|ANKRD32|84250|ankyrin repeat domain 32##CR936768|ANKRD32|84250|ankyrin repeat domain 32##AL050298|ANKRD32|84250|ankyrin repeat domain 32##NM_032290|ANKRD32|84250|ankyrin repeat domain 32##BC054885|ANKRD32|84250|ankyrin repeat domain 32##BC107571|ANKRD32|84250|ankyrin repeat domain 32	0.08002	0.0	
chr1	40192967	40193113	reg1005024.p2	6.952	+	TSC_hg19_v1_chr1_-_40157103 BC030827 AL136591 NM_016257 AK294412 AK312314 AK294813	-35938	-	AF331801 AY028778 BC103879 BC103880 NM_032526	-55331	-	TSC_hg19_v1_chr1_-_40105343 NM_014571	-87695	-	NM_001195007 NM_006112 NM_203456 TSC_hg19_v1_chr1_+_40204553 AK313666 BC008451 AL833576 AF104012 AF104013 AK094660 AK304694 BC107736	11498	+	AK130628 TSC_hg19_v1_chr1_+_40204563 AK293094 BC004898 AB464008 CU678794 DQ160195	11527	+	AK314586 DQ893340 DQ896660 BC030015 AB050193 AK093089 AX747914 BC072388 AY013700 NM_022120	43932	-	BC030827|HPCAL4|51440|hippocalcin like 4##AL136591|HPCAL4|51440|hippocalcin like 4##NM_016257|HPCAL4|51440|hippocalcin like 4##AK294412|HPCAL4|51440|hippocalcin like 4##AK312314|HPCAL4|51440|hippocalcin like 4##AK294813|HPCAL4|51440|hippocalcin like 4##AF331801|NT5C1A|84618|5'-nucleotidase, cytosolic IA##AY028778|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103879|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103880|NT5C1A|84618|5'-nucleotidase, cytosolic IA##NM_032526|NT5C1A|84618|5'-nucleotidase, cytosolic IA##NM_014571|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##NM_001195007|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_006112|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_203456|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK313666|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC008451|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AL833576|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104012|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104013|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK094660|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK304694|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC107736|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK130628|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK293094|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC004898|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##DQ160195|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK314586|OXCT2|64064|3-oxoacid CoA transferase 2##DQ893340|OXCT2|64064|3-oxoacid CoA transferase 2##DQ896660|OXCT2|64064|3-oxoacid CoA transferase 2##BC030015|OXCT2|64064|3-oxoacid CoA transferase 2##AB050193|OXCT2|64064|3-oxoacid CoA transferase 2##AK093089|OXCT2|64064|3-oxoacid CoA transferase 2##BC072388|OXCT2|64064|3-oxoacid CoA transferase 2##AY013700|OXCT2|64064|3-oxoacid CoA transferase 2##NM_022120|OXCT2|64064|3-oxoacid CoA transferase 2	0.019624	0.0	
chr14	71792829	71792956	reg1005902.p2	6.952	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-418441	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-418759	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-517083	-	AF090989 AF090990 NM_015556	203149	+	AK294895 NM_001204423	605924	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	606261	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.995648	0.0	denovo_WM_7:44:0.815
chr16	9226786	9226885	reg1004756.p2	6.952	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-41232	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-41295	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-169540	-	BC143273 U09002 NM_001134408	1048998	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	1049353	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	1049842	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.972818	0.0	denovo_WM_7:-9:0.806
chr10	18136761	18136887	reg1005379.p1	6.951	+	AK308132 AK308167 J05550 NM_002438 X55635 BC146838 DQ663787	-38431	+	NM_001098844 BC157856	-95603	+	AK308132 AK308167 BC142642 J05550 NM_002438 X55635 BC146838 DQ663787	-285421	+	NM_001145195 NM_152725 AK055061 BC035118 BC047635 AK295294 BC094700	104005	+	NM_201593 NM_201596 NM_201597 S60415 BC136409 AF137376 AF423191 AY393860 AY675091 AK296471 AK311694 AK307526 NM_001167945 NM_201571 NM_201572 AK293837	292883	+	NM_000724 AB208917 U95019	412816	+	J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##BC142642|MRC1|4360|mannose receptor, C type 1##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001145195|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##NM_152725|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK055061|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC035118|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC047635|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK295294|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC094700|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##NM_201593|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201596|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201597|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##S60415|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##BC136409|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF137376|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF423191|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY393860|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY675091|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK296471|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK311694|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK307526|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_001167945|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201571|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201572|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK293837|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit	1.904081	0.51397	CTCF.p2:-14:0.514	denovo_WM_7:19:0.923	denovo_WM_7:34:0.765
chr1	154363384	154363536	reg1004649.p1	6.951	+	TSC_hg19_v1_chr1_+_154301249 AK054886	-62204	+	AY302537 NM_020452	-63185	+	TSC_hg19_v1_chr1_+_154298034 NM_001005855 X58235	-65397	+	NM_000565 NM_001206866 NM_181359 X12830 BC089410 TSC_hg19_v1_chr1_+_154377822	14290	+	AK223582 BC132684 BC132686 TSC_hg19_v1_chr1_+_154377856	14392	+	TSC_hg19_v1_chr1_+_154378074 AK293013 X58298 AK312730 BC035327 AB527867 HQ258435 HQ258616	14614	+	AK054886|ATP8B2|57198|ATPase, class I, type 8B, member 2##AY302537|ATP8B2|57198|ATPase, class I, type 8B, member 2##NM_020452|ATP8B2|57198|ATPase, class I, type 8B, member 2##NM_001005855|ATP8B2|57198|ATPase, class I, type 8B, member 2##NM_000565|IL6R|3570|interleukin 6 receptor##NM_001206866|IL6R|3570|interleukin 6 receptor##NM_181359|IL6R|3570|interleukin 6 receptor##X12830|IL6R|3570|interleukin 6 receptor##BC089410|IL6R|3570|interleukin 6 receptor##AK223582|IL6R|3570|interleukin 6 receptor##BC132684|IL6R|3570|interleukin 6 receptor##BC132686|IL6R|3570|interleukin 6 receptor##AK293013|IL6R|3570|interleukin 6 receptor##X58298|IL6R|3570|interleukin 6 receptor##AK312730|IL6R|3570|interleukin 6 receptor##BC035327|IL6R|3570|interleukin 6 receptor##HQ258435|IL6R|3570|interleukin 6 receptor##HQ258616|IL6R|3570|interleukin 6 receptor	1.996542	0.0	denovo_WM_7:-8:0.841
chr1	32610860	32610974	reg1004023.p2	6.951	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	-37270	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	-72343	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	-72413	+	TSC_hg19_v1_chr1_+_32645315 AL832636 AL832338	34370	+	TSC_hg19_v1_chr1_+_32645343 AK096939 NM_175852	34424	+	TSC_hg19_v1_chr1_+_32645661 AL832637	34739	+	NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL832636|TXLNA|200081|taxilin alpha##AL832338|TXLNA|200081|taxilin alpha##AK096939|TXLNA|200081|taxilin alpha##NM_175852|TXLNA|200081|taxilin alpha##AL832637|TXLNA|200081|taxilin alpha	0.976583	0.0	denovo_WM_7:19:0.809
chr17	28602023	28602131	reg1004124.p2	6.951	+	NM_001045	-39124	-	TSC_hg19_v1_chr17_+_28443846 AK297102 AL136806 NM_032141 AK094552 BC062425 AK313963 BC105044 BC105046 BC143417 BC143539 BC046116 BC040118 AF161358 BC016313 AB462988 AM392705 AM392719 CR533555	-158236	+	NM_198529 BX648689 BC137519	-333373	+	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	16882	-	NM_000386 TSC_hg19_v1_chr17_-_28619220	17126	-	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	58985	-	NM_001045|SLC6A4|6532|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4##AK297102|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AL136806|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_032141|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK094552|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC062425|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK313963|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105044|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105046|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143417|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143539|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC046116|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC040118|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AF161358|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC016313|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392705|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392719|NSRP1|84081|nuclear speckle splicing regulatory protein 1##CR533555|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_000386|BLMH|642|bleomycin hydrolase##AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1	0.999781	0.0	
chr1	198648215	198648395	reg1005314.p1	6.950	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-39975	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-40080	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-40132	+	TSC_hg19_v1_chr1_-_198906559 EF413001	258242	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1348564	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1363419	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	0.999132	0.0	denovo_WM_7:65:0.239	denovo_WM_7:66:0.239	denovo_WM_7:67:0.239	denovo_WM_7:68:0.239
chr3	142926220	142926387	reg1005858.p2	6.949	+	BC067737 TSC_hg19_v1_chr3_+_142895211	-31132	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-87652	+	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	-205873	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	640964	-	NM_173552 AK315082	764349	+	TSC_hg19_v1_chr3_+_143690915 BC037293	764687	+	NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58	0.0	0.0	
chr6	30735569	30735711	reg1005730.p2	6.949	+	AF039067 BT006703 AB591006 AF083421 Y14551 BC000844 BC005080 S81914 TSC_hg19_v1_chr6_-_30712325 AK222588 AK314162 NM_003897	-23329	-	TSC_hg19_v1_chr6_-_30710463 AF085357 AF089750 AF117234 NM_005803 AK301291 AK000816 AK222530	-25192	-	BC001896 TSC_hg19_v1_chr6_+_30691264 DQ457058 BC029323 BC015889	-44379	+	AK291621 TSC_hg19_v1_chr6_+_30850729	115073	+	BC008716 BC013400 NM_001954	116220	+	NM_013993 L20817 L57508 TSC_hg19_v1_chr6_+_30852354 BC070070 AB210021 L11315	116745	+	AF039067|IER3|8870|immediate early response 3##BT006703|IER3|8870|immediate early response 3##AF083421|IER3|8870|immediate early response 3##Y14551|IER3|8870|immediate early response 3##BC000844|IER3|8870|immediate early response 3##BC005080|IER3|8870|immediate early response 3##S81914|IER3|8870|immediate early response 3##AK222588|IER3|8870|immediate early response 3##AK314162|IER3|8870|immediate early response 3##NM_003897|IER3|8870|immediate early response 3##AF085357|FLOT1|10211|flotillin 1##AF089750|FLOT1|10211|flotillin 1##AF117234|FLOT1|10211|flotillin 1##NM_005803|FLOT1|10211|flotillin 1##AK301291|FLOT1|10211|flotillin 1##AK000816|FLOT1|10211|flotillin 1##AK222530|FLOT1|10211|flotillin 1##BC001896|TUBB|203068|tubulin, beta class I##DQ457058|TUBB|203068|tubulin, beta class I##BC029323|TUBB|203068|tubulin, beta class I##BC015889|TUBB|203068|tubulin, beta class I##AK291621|DDR1|780|discoidin domain receptor tyrosine kinase 1##BC008716|DDR1|780|discoidin domain receptor tyrosine kinase 1##BC013400|DDR1|780|discoidin domain receptor tyrosine kinase 1##NM_001954|DDR1|780|discoidin domain receptor tyrosine kinase 1##NM_013993|DDR1|780|discoidin domain receptor tyrosine kinase 1##L20817|DDR1|780|discoidin domain receptor tyrosine kinase 1##L57508|DDR1|780|discoidin domain receptor tyrosine kinase 1##BC070070|DDR1|780|discoidin domain receptor tyrosine kinase 1##AB210021|DDR1|780|discoidin domain receptor tyrosine kinase 1##L11315|DDR1|780|discoidin domain receptor tyrosine kinase 1	0.981751	0.0	denovo_WM_7:21:0.337	denovo_WM_7:22:0.355	denovo_WM_7:23:0.266
chr2	223612402	223612540	reg1005679.p1	6.948	+	TSC_hg19_v1_chr2_+_223536376 AF384163 NM_058165	-76062	+	TSC_hg19_v1_chr2_-_223520807 AK294158 BC006502 AF042346 CU676064 BC011261 AK001025 BC008434 BC017783 D84430 AK316497 AK291531 AF161521 BC022273 NM_005687	-91677	-	TSC_hg19_v1_chr2_+_223289285 AF542512 BC134342 NM_152386 BC106905 BC114513 BC106904	-323164	+	TSC_hg19_v1_chr2_+_223725753 NM_004457 NM_203372 BC041692 AK314621 AB061712	113276	+	NM_080671 TSC_hg19_v1_chr2_+_223916907 DQ192293 AK313203 BC014429 AY065987	304426	+	M25756 TSC_hg19_v1_chr2_-_224467083 AK298828 AK312452	854595	-	AF384163|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##NM_058165|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##AK294158|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC006502|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF042346|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC011261|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK001025|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC008434|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC017783|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##D84430|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK316497|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK291531|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF161521|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC022273|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##NM_005687|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF542512|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC134342|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_152386|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106905|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC114513|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106904|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_004457|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_203372|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##BC041692|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AK314621|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AB061712|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_080671|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##DQ192293|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AK313203|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##BC014429|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AY065987|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##M25756|SCG2|7857|secretogranin II##AK298828|SCG2|7857|secretogranin II##AK312452|SCG2|7857|secretogranin II	0.175453	0.0	
chr19	14201374	14201515	reg1005194.p2	6.947	+	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	-168	-	NM_001145028	-31474	-	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-58797	+	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	23610	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	27016	-	TSC_hg19_v1_chr19_-_14228563 AK290147	27125	-	AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##NM_001145028|PALM3|342979|paralemmin 3##BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.993729	0.0	
chr7	120446107	120446248	reg1006880.p1	6.947	+	AK307139 AB028967 NM_012281	-532473	+	NM_019644 AK302407	-2581443	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-2622006	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	51843	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	51983	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	144704	+	AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3	0.0	0.980691	CTCF.p2:-34:0.981
chr14	77491159	77491339	reg1002845.p2	6.946	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-198454	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-211987	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-212039	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	3435	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	3811	-	AK124327 TSC_hg19_v1_chr14_-_77542533	51284	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	3.311841	0.0	denovo_WM_7:16:0.243	denovo_WM_7:17:0.209	denovo_WM_7:36:0.204	denovo_WM_7:37:0.238
chr12	14324209	14324350	reg1004645.p2	6.945	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-191293	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-974550	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-974562	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	194356	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	213993	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	396330	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.993055	0.0	denovo_WM_7:78:0.314	denovo_WM_7:79:0.314	denovo_WM_7:80:0.314
chr15	67394553	67394717	reg1004755.p1	6.945	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-36234	+	TSC_hg19_v1_chr15_+_67358179 AK290881	-36460	+	NM_001142861 U59914	-393706	+	NM_001145102 AK316017	23488	+	AK298139 NM_001145103	35723	+	NM_001145104 AK300614 AK301348	63861	+	NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##AK290881|SMAD3|4088|SMAD family member 3##NM_001142861|SMAD6|4091|SMAD family member 6##U59914|SMAD6|4091|SMAD family member 6##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3	0.016461	0.0	
chrX	20970045	20970173	reg1006129.p1	6.945	+	TSC_hg19_v1_chrX_-_20285141 AK294373	-684945	-	TSC_hg19_v1_chrX_-_20285001 AB208933	-685152	-	AB102662 L07599 AB384785 BC096301 BC096302 BC096303 NM_004586 U08316 AK313932	-685379	-	TSC_hg19_v1_chrX_+_21392535 NM_001168647 NM_001168648 NM_001168649 NM_014927 AB020709 AK294728	422399	+	BC109031 AK092279 AX747450 NM_153270	706322	-	BC005948 AF129505 AJ250584 NM_014332 AK312134	806108	-	AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB102662|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##L07599|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096301|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096302|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096303|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_004586|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##U08316|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK313932|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_001168647|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168648|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168649|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_014927|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AB020709|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AK294728|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##BC109031|KLHL34|257240|kelch-like 34 (Drosophila)##AK092279|KLHL34|257240|kelch-like 34 (Drosophila)##NM_153270|KLHL34|257240|kelch-like 34 (Drosophila)##BC005948|SMPX|23676|small muscle protein, X-linked##AF129505|SMPX|23676|small muscle protein, X-linked##AJ250584|SMPX|23676|small muscle protein, X-linked##NM_014332|SMPX|23676|small muscle protein, X-linked##AK312134|SMPX|23676|small muscle protein, X-linked	0.992257	0.0	denovo_WM_7:-3:0.789
chr2	58120129	58120309	reg1005892.p1	6.943	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-1707310	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-1708453	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-1709014	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	153535	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	153769	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	348263	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	0.0	0.0	
chr7	35075450	35075600	reg1005878.p1	6.941	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	-377606	+	AK289963 NM_133468 AK096150 BC060868	-1130383	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-1906444	+	DQ287932 NM_015283	2127	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	150267	-	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	218205	-	AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20	0.182867	0.0	
chr11	68184802	68184958	reg1004641.p1	6.940	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-69444	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-104791	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-145422	-	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	43329	+	AK001920 TSC_hg19_v1_chr11_+_68367929	182996	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	267103	+	AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide	1.991357	0.0	denovo_WM_7:44:0.270	denovo_WM_7:45:0.727	denovo_WM_7:60:0.860
chr14	23754416	23754552	reg1004955.p1	6.940	+	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-101612	-	TSC_hg19_v1_chr14_-_23652818 AB037669	-101662	-	TSC_hg19_v1_chr14_-_23623523 AK307609 AK300384 BX248288 NM_182728	-130923	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	785	-	NM_020834 TSC_hg19_v1_chr14_-_23755308	841	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	21560	+	AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AB037669|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK307609|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK300384|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##BX248288|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_182728|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2	0.991899	0.0	denovo_WM_7:-13:0.822
chr16	79804287	79804402	reg1001040.p1	6.940	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-169729	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-1670889	+	NM_001244755	-1741359	+	AF125108 NM_130897 BC054892 BC035232	770544	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1033703	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	1235740	+	AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N	0.0	0.0	
chr2	172245958	172246116	reg1005480.p1	6.940	+	AK090779 NM_001136554	-158214	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-228538	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-228941	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	44489	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	44725	+	TSC_hg19_v1_chr2_+_172290824 CR933646	44774	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	1.985823	0.0	denovo_WM_7:-4:0.753	denovo_WM_7:10:0.743
chr13	41582624	41582804	reg1005637.p1	6.939	+	AK304289 BC010575 BC030507 NM_001145353	-26326	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	-26518	-	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	-86849	-	TSC_hg19_v1_chr13_-_41593453 M82882	10729	-	TSC_hg19_v1_chr13_-_41593499 NM_172373	10785	-	BX640798 TSC_hg19_v1_chr13_-_41635093	52371	-	AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##M82882|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_172373|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BX640798|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.98332	0.0	denovo_WM_7:0:0.848
chr16	81871190	81871363	reg1005932.p1	6.939	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-58346	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-58374	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-58379	+	BC019670 AK315652 AK026740 NM_145168	173792	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	197585	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	197656	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.987561	0.0	denovo_WM_7:20:0.243	denovo_WM_7:21:0.243	denovo_WM_7:22:0.243	denovo_WM_7:23:0.243
chr19	47260680	47260808	reg1005996.p2	6.937	+	TSC_hg19_v1_chr19_-_47249708 NM_001039877 NM_013403	-11031	-	TSC_hg19_v1_chr19_-_47249688 AF212940 AB527410 BC034604	-11050	-	BC014278 AB209003 TSC_hg19_v1_chr19_-_47249674	-11089	-	TSC_hg19_v1_chr19_-_47288122 AK316546 AK299137 NM_001145145 AK055630	27356	-	AK293433 AK301661 NM_001145144	29798	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	30529	-	NM_001039877|STRN4|29888|striatin, calmodulin binding protein 4##NM_013403|STRN4|29888|striatin, calmodulin binding protein 4##AF212940|STRN4|29888|striatin, calmodulin binding protein 4##BC034604|STRN4|29888|striatin, calmodulin binding protein 4##BC014278|STRN4|29888|striatin, calmodulin binding protein 4##AB209003|STRN4|29888|striatin, calmodulin binding protein 4##AK316546|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK299137|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145145|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK055630|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK293433|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK301661|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145144|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5	0.0	0.977753	CTCF.p2:-5:0.978
chr4	24659643	24659790	reg1005158.p1	6.935	+	TSC_hg19_v1_chr4_-_24586178 NM_001358	-73527	-	AB001636 TSC_hg19_v1_chr4_-_24586176	-73540	-	TSC_hg19_v1_chr4_-_24586154 AK303506 BC035974	-73556	-	NM_003102 TSC_hg19_v1_chr4_+_24797099 AK313935	137391	+	TSC_hg19_v1_chr4_+_24797207 BC014418 J02947	137502	+	AK125353 BC057761 BC067735 NM_001130726 TSC_hg19_v1_chr4_-_24914655	254865	-	NM_001358|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##AB001636|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##AK303506|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##BC035974|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##NM_003102|SOD3|6649|superoxide dismutase 3, extracellular##AK313935|SOD3|6649|superoxide dismutase 3, extracellular##BC014418|SOD3|6649|superoxide dismutase 3, extracellular##J02947|SOD3|6649|superoxide dismutase 3, extracellular##AK125353|CCDC149|91050|coiled-coil domain containing 149##BC057761|CCDC149|91050|coiled-coil domain containing 149##BC067735|CCDC149|91050|coiled-coil domain containing 149##NM_001130726|CCDC149|91050|coiled-coil domain containing 149	0.995286	0.0	
chr15	65077421	65077510	reg1004387.p1	6.934	+	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-9719	-	TSC_hg19_v1_chr15_-_64995461 BC047755 NM_002537	-81996	-	TSC_hg19_v1_chr15_-_64995415 AF057297 BC063577 BC073877 BC035493 BC092483	-82063	-	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	40370	-	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	56642	+	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	126624	+	BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC047755|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_002537|OAZ2|4947|ornithine decarboxylase antizyme 2##AF057297|OAZ2|4947|ornithine decarboxylase antizyme 2##BC063577|OAZ2|4947|ornithine decarboxylase antizyme 2##BC073877|OAZ2|4947|ornithine decarboxylase antizyme 2##BC035493|OAZ2|4947|ornithine decarboxylase antizyme 2##BC092483|OAZ2|4947|ornithine decarboxylase antizyme 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A	0.994582	0.0	
chr19	7764316	7764474	reg1004754.p1	6.934	+	TSC_hg19_v1_chr19_-_7764328 NM_001207019	-69	-	TSC_hg19_v1_chr19_+_7745742 BC042161 NM_174894 NM_001042461 BC022836	-18640	+	NM_001042462 TSC_hg19_v1_chr19_+_7745726 AK292001	-18678	+	BC064417 BC062591 AK223207 BC014108 M14766 TSC_hg19_v1_chr19_-_7767004 AK310707 AK310071 M15059 NM_001220500 NM_002002 X04772	2609	-	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	32621	-	AY042221 AY042222 AY042223 AY042224 AY042225 AY042226 AY042227 AY042228 AY042229 AY042230 AY042231 AY042232 AY042233 AB527563 BC110615 AF290886 AK293089 TSC_hg19_v1_chr19_-_7812421 M98457 AK304190 AK313585 NM_001144893 NM_001144894 NM_001144895 NM_001144896 NM_001144897 NM_001144899 NM_021155	48034	-	NM_001207019|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC042161|TRAPPC5|126003|trafficking protein particle complex 5##NM_174894|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042461|TRAPPC5|126003|trafficking protein particle complex 5##BC022836|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042462|TRAPPC5|126003|trafficking protein particle complex 5##AK292001|TRAPPC5|126003|trafficking protein particle complex 5##BC064417|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC062591|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK223207|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC014108|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M14766|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310707|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310071|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M15059|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_001220500|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_002002|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##X04772|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G##AY042221|CD209|30835|CD209 molecule##AY042222|CD209|30835|CD209 molecule##AY042223|CD209|30835|CD209 molecule##AY042224|CD209|30835|CD209 molecule##AY042225|CD209|30835|CD209 molecule##AY042226|CD209|30835|CD209 molecule##AY042227|CD209|30835|CD209 molecule##AY042228|CD209|30835|CD209 molecule##AY042229|CD209|30835|CD209 molecule##AY042230|CD209|30835|CD209 molecule##AY042231|CD209|30835|CD209 molecule##AY042232|CD209|30835|CD209 molecule##AY042233|CD209|30835|CD209 molecule##BC110615|CD209|30835|CD209 molecule##AF290886|CD209|30835|CD209 molecule##AK293089|CD209|30835|CD209 molecule##M98457|CD209|30835|CD209 molecule##AK304190|CD209|30835|CD209 molecule##AK313585|CD209|30835|CD209 molecule##NM_001144893|CD209|30835|CD209 molecule##NM_001144894|CD209|30835|CD209 molecule##NM_001144895|CD209|30835|CD209 molecule##NM_001144896|CD209|30835|CD209 molecule##NM_001144897|CD209|30835|CD209 molecule##NM_001144899|CD209|30835|CD209 molecule##NM_021155|CD209|30835|CD209 molecule	1.492675	0.0	denovo_WM_7:-6:0.258	denovo_WM_7:-23:0.788
chr14	64971887	64972048	reg1006027.p1	6.933	+	TSC_hg19_v1_chr14_+_64971513 AK291743	-444	+	TSC_hg19_v1_chr14_+_64971443 AB023214	-524	+	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	-709	+	TSC_hg19_v1_chr14_+_65007187 NM_021979	35267	+	TSC_hg19_v1_chr14_+_65007458 AK097824 BC036107 BC034365 AB527255 BT009815 CU674866 DQ892538 DQ895749	35525	+	TSC_hg19_v1_chr14_+_65016678 AK058044 NM_172365 BC068989	44678	+	AK291743|ZBTB1|22890|zinc finger and BTB domain containing 1##AB023214|ZBTB1|22890|zinc finger and BTB domain containing 1##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_021979|HSPA2|3306|heat shock 70kDa protein 2##AK097824|HSPA2|3306|heat shock 70kDa protein 2##BC036107|HSPA2|3306|heat shock 70kDa protein 2##BC034365|HSPA2|3306|heat shock 70kDa protein 2##BT009815|HSPA2|3306|heat shock 70kDa protein 2##DQ892538|HSPA2|3306|heat shock 70kDa protein 2##DQ895749|HSPA2|3306|heat shock 70kDa protein 2##AK058044|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##NM_172365|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##BC068989|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36	0.03669	0.0	
chr4	101946949	101947098	reg1005439.p1	6.933	+	CU676062 AB590686 AB034695 AK222741 AK304568 AK291831 BC017781 AF205940 AK026875 AK313504 NM_001159694 NM_016242	-507863	-	AL832277 BC013592 TSC_hg19_v1_chr4_-_101111626 AK312926 AK094236 NM_145244	-835393	-	TSC_hg19_v1_chr4_+_100871641 AK123926	-1075377	+	AB385587 AB451338 AB451487 AM393486 AM393713 CU693026 AY904364 BC025714 TSC_hg19_v1_chr4_-_102268080 L14778	321003	-	TSC_hg19_v1_chr4_-_102268343 AL353950	321349	-	AK290532 TSC_hg19_v1_chr4_-_102268547	321492	-	AB034695|EMCN|51705|endomucin##AK222741|EMCN|51705|endomucin##AK304568|EMCN|51705|endomucin##AK291831|EMCN|51705|endomucin##BC017781|EMCN|51705|endomucin##AF205940|EMCN|51705|endomucin##AK026875|EMCN|51705|endomucin##AK313504|EMCN|51705|endomucin##NM_001159694|EMCN|51705|endomucin##NM_016242|EMCN|51705|endomucin##AL832277|DDIT4L|115265|DNA-damage-inducible transcript 4-like##BC013592|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK312926|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK094236|DDIT4L|115265|DNA-damage-inducible transcript 4-like##NM_145244|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK123926|LOC256880|256880|uncharacterized LOC256880##AB451338|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AB451487|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393486|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393713|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AY904364|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##BC025714|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##L14778|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AL353950|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AK290532|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme	1.979542	0.0	denovo_WM_7:-22:0.974	denovo_WM_7:-37:0.975
chr11	33728052	33728212	reg1005546.p1	6.932	+	NM_001166692	-5847	-	TSC_hg19_v1_chr11_+_33563772 AK124395 NM_012194	-164308	+	TSC_hg19_v1_chr11_+_33363104 AK304063	-364988	+	AK309894 NM_001127223 NM_001127225 NM_001127226	16140	-	NM_001127227	16365	-	TSC_hg19_v1_chr11_-_33757970 M27909 AK311778 X16447 X17198 NM_000611 NM_203329 NM_203330 NM_203331	29816	-	NM_001166692|C11orf91|100131378|chromosome 11 open reading frame 91##AK124395|C11orf41|25758|chromosome 11 open reading frame 41##NM_012194|C11orf41|25758|chromosome 11 open reading frame 41##AK304063|HIPK3|10114|homeodomain interacting protein kinase 3##AK309894|CD59|966|CD59 molecule, complement regulatory protein##NM_001127223|CD59|966|CD59 molecule, complement regulatory protein##NM_001127225|CD59|966|CD59 molecule, complement regulatory protein##NM_001127226|CD59|966|CD59 molecule, complement regulatory protein##NM_001127227|CD59|966|CD59 molecule, complement regulatory protein##M27909|CD59|966|CD59 molecule, complement regulatory protein##AK311778|CD59|966|CD59 molecule, complement regulatory protein##X16447|CD59|966|CD59 molecule, complement regulatory protein##X17198|CD59|966|CD59 molecule, complement regulatory protein##NM_000611|CD59|966|CD59 molecule, complement regulatory protein##NM_203329|CD59|966|CD59 molecule, complement regulatory protein##NM_203330|CD59|966|CD59 molecule, complement regulatory protein##NM_203331|CD59|966|CD59 molecule, complement regulatory protein	0.998199	0.0	
chr1	32338572	32338719	reg1005478.p1	6.932	+	BC114430 AK131447 NM_144569 AK091016 AX746730	-57046	-	TSC_hg19_v1_chr1_-_32264318 AK095829	-74324	-	BC029069 AK096192 TSC_hg19_v1_chr1_-_32264233 BC007910	-74405	-	NM_001195100 NM_001195101	46613	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	65286	-	TSC_hg19_v1_chr1_-_32403992 NM_080391	65352	-	BC114430|SPOCD1|90853|SPOC domain containing 1##AK131447|SPOCD1|90853|SPOC domain containing 1##NM_144569|SPOCD1|90853|SPOC domain containing 1##AK091016|SPOCD1|90853|SPOC domain containing 1##AK095829|SPOCD1|90853|SPOC domain containing 1##BC029069|SPOCD1|90853|SPOC domain containing 1##BC007910|SPOCD1|90853|SPOC domain containing 1##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2	0.995926	0.0	denovo_WM_7:-3:0.815
chr20	55582277	55582392	reg1004796.p1	6.932	+	TSC_hg19_v1_chr20_+_55204361 BC051829 NM_003222 AK314272 BC035664 U85658 X95693	-377904	+	BC014951 NM_001013646	-474051	+	AK131203 NM_080615	-481354	-	EU679366 AK094784 CU678997 DQ891494 DQ894685 EU176612 AB528364 CU678634 BC008584 M60316 AK312419 AK291186 TSC_hg19_v1_chr20_-_55841286 X51801	258861	-	TSC_hg19_v1_chr20_-_55841684 BC004248 NM_001719	259354	-	AF169385 NM_012444 NM_198265 BC033591 AF149310	322518	+	BC051829|TFAP2C|7022|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)##NM_003222|TFAP2C|7022|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)##AK314272|TFAP2C|7022|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)##BC035664|TFAP2C|7022|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)##U85658|TFAP2C|7022|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)##X95693|TFAP2C|7022|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)##BC014951|FAM209B|388799|family with sequence similarity 209, member B##NM_001013646|FAM209B|388799|family with sequence similarity 209, member B##AK131203|GCNT7|140687|glucosaminyl (N-acetyl) transferase family member 7##NM_080615|GCNT7|140687|glucosaminyl (N-acetyl) transferase family member 7##EU679366|BMP7|655|bone morphogenetic protein 7##AK094784|BMP7|655|bone morphogenetic protein 7##DQ891494|BMP7|655|bone morphogenetic protein 7##DQ894685|BMP7|655|bone morphogenetic protein 7##EU176612|BMP7|655|bone morphogenetic protein 7##BC008584|BMP7|655|bone morphogenetic protein 7##M60316|BMP7|655|bone morphogenetic protein 7##AK312419|BMP7|655|bone morphogenetic protein 7##AK291186|BMP7|655|bone morphogenetic protein 7##X51801|BMP7|655|bone morphogenetic protein 7##BC004248|BMP7|655|bone morphogenetic protein 7##NM_001719|BMP7|655|bone morphogenetic protein 7##AF169385|SPO11|23626|SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)##NM_012444|SPO11|23626|SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)##NM_198265|SPO11|23626|SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)##BC033591|SPO11|23626|SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)##AF149310|SPO11|23626|SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)	0.0	0.0	
chr17	73074687	73074828	reg1005459.p1	6.931	+	TSC_hg19_v1_chr17_+_73043325 D79998	-31424	+	TSC_hg19_v1_chr17_+_73043288 BC033329 NM_015353	-31528	+	BC032245 TSC_hg19_v1_chr17_-_73043079	-31678	-	TSC_hg19_v1_chr17_+_73084056 BC009684 NM_004695	9298	+	TSC_hg19_v1_chr17_+_73106069 AK300997 AK310697 BC011728 NM_024585	31297	+	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	53100	-	D79998|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC033329|KCTD2|23510|potassium channel tetramerisation domain containing 2##NM_015353|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC032245|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC009684|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##NM_004695|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##AK300997|ARMC7|79637|armadillo repeat containing 7##BC011728|ARMC7|79637|armadillo repeat containing 7##NM_024585|ARMC7|79637|armadillo repeat containing 7##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic	0.0	0.0	
chr3	55641956	55642081	reg1005617.p2	6.931	+	TSC_hg19_v1_chr3_-_55521567 AK090582	-120400	-	BC064694 NM_003392 AK290375 TSC_hg19_v1_chr3_-_55521332	-120686	-	AK290869 TSC_hg19_v1_chr3_-_55515412	-126610	-	BC111550 BC112391 AB002376 NM_015576	860359	-	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	949184	+	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	949228	+	AK090582|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC064694|WNT5A|7474|wingless-type MMTV integration site family, member 5A##NM_003392|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290375|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290869|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC111550|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##BC112391|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##AB002376|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_015576|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66	0.940789	0.0	denovo_WM_7:6:0.322	denovo_WM_7:7:0.368
chr15	90574744	90574863	reg1005702.p1	6.929	+	TSC_hg19_v1_chr15_+_90544707 BC020301 AK094712 NM_198526	-30114	+	AK093274 AX748027 CU691000 TSC_hg19_v1_chr15_-_90456145 AK000495 BC053602 NM_001199058 NM_182616	-118698	-	NM_005829	-137187	-	DQ892817 DQ896063 CU679271 TSC_hg19_v1_chr15_-_90645701 BC071828 BC009244 AK222916 AK299987	70859	-	TSC_hg19_v1_chr15_-_90645704 NM_002168 X69433	70902	-	TSC_hg19_v1_chr15_-_90645713 AK312627	70924	-	BC020301|ZNF710|374655|zinc finger protein 710##AK094712|ZNF710|374655|zinc finger protein 710##NM_198526|ZNF710|374655|zinc finger protein 710##AK093274|C15orf38|348110|chromosome 15 open reading frame 38##AK000495|C15orf38-AP3S2|100526783|C15orf38-AP3S2 readthrough##BC053602|C15orf38|348110|chromosome 15 open reading frame 38##NM_001199058|C15orf38-AP3S2|100526783|C15orf38-AP3S2 readthrough##NM_182616|C15orf38|348110|chromosome 15 open reading frame 38##NM_005829|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##DQ892817|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ896063|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC071828|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC009244|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK222916|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK299987|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_002168|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##X69433|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK312627|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial	0.0	0.0	
chr17	66178221	66178401	reg1002211.p3	6.929	+	TSC_hg19_v1_chr17_+_66097706 BC045718	-80613	+	TSC_hg19_v1_chr17_+_66031889 BC034443	-146423	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	-146471	+	NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_016627 TSC_hg19_v1_chr17_+_66244216 BC056271 BC050709	65869	+	TSC_hg19_v1_chr17_+_66244233 AF208856	65932	+	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	77023	+	BC045718|LOC100499466|100499466|uncharacterized LOC100499466##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_001033569|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033570|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033571|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033572|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033574|AMZ2|51321|archaelysin family metallopeptidase 2##NM_016627|AMZ2|51321|archaelysin family metallopeptidase 2##BC056271|AMZ2|51321|archaelysin family metallopeptidase 2##BC050709|AMZ2|51321|archaelysin family metallopeptidase 2##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G	0.0	0.0	
chr9	125227366	125227489	reg1006412.p1	6.928	+	AK304403 TSC_hg19_v1_chr9_+_125137614	-89820	+	TSC_hg19_v1_chr9_+_125133330 AK290022 M59979 AB590429 DQ180740 DQ180741 DQ180742 S36219 S36271 S78220	-94085	+	NM_000962 NM_080591 TSC_hg19_v1_chr9_+_125133302 BC029840	-94156	+	NM_001004451 AB529234 BC136933 BC136938	12792	-	AB528201 NM_054107	45653	+	AB529305 NM_001004452 BC131606	53992	+	AK304403|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##AK290022|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##M59979|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##DQ180740|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##DQ180741|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##DQ180742|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##S36219|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##S36271|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##S78220|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##NM_000962|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##NM_080591|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##BC029840|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##NM_001004451|OR1J1|347168|olfactory receptor, family 1, subfamily J, member 1##BC136933|OR1J1|347168|olfactory receptor, family 1, subfamily J, member 1##BC136938|OR1J1|347168|olfactory receptor, family 1, subfamily J, member 1##NM_054107|OR1J2|26740|olfactory receptor, family 1, subfamily J, member 2##NM_001004452|OR1J4|26219|olfactory receptor, family 1, subfamily J, member 4##BC131606|OR1J4|26219|olfactory receptor, family 1, subfamily J, member 4	0.0	0.019362	
chr6	11714604	11714718	reg1004037.p1	6.927	+	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-176163	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-332121	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-481751	-	NM_001143948 NM_032744	64618	-	NM_002114	298062	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	575932	+	NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.999219	0.0	denovo_WM_7:-13:0.594	denovo_WM_7:-14:0.230
chr2	61023770	61023917	reg1005175.p1	6.926	+	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	-40359	+	AF080216 TSC_hg19_v1_chr2_-_60780784	-243065	-	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	-243321	-	TSC_hg19_v1_chr2_+_61108702 AK303926	84862	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	84894	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	84944	+	NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)	0.979468	0.0	denovo_WM_7:18:0.499	denovo_WM_7:19:0.400
chr1	151043819	151043958	reg1003292.p4	6.925	+	BC027033 NM_144618 TSC_hg19_v1_chr1_+_151043238 AK092230 AX747418 AK313606 AK301882	-704	+	TSC_hg19_v1_chr1_+_151032908 BC019253	-10979	+	AK057755 TSC_hg19_v1_chr1_+_151032886 BC007079 BC008445	-11002	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	75159	-	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	85242	+	TSC_hg19_v1_chr1_-_151138337 BX647911 NM_212551 AK298706 NM_001136543	94488	-	BC027033|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##NM_144618|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK092230|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK313606|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK301882|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##BC019253|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AK057755|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC007079|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC008445|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BX647911|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_212551|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##AK298706|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001136543|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1	0.99846	0.0	denovo_WM_7:48:0.435	denovo_WM_7:49:0.435
chr15	40942244	40942387	reg1005360.p1	6.925	+	TSC_hg19_v1_chr15_+_40886474 AB022190 BC014306 NM_144508 NM_170589 AK307605 AK307996 AF248041 AF461041 BC029373	-55851	+	AF173994 TSC_hg19_v1_chr15_+_40886230 BC043597	-56090	+	TSC_hg19_v1_chr15_+_40861536 AK055971 AK301706 NM_152260 CU677781	-80731	+	TSC_hg19_v1_chr15_-_40987295 AK125393	44980	-	EU362635 NM_001164270 NM_002875 NM_133487 TSC_hg19_v1_chr15_+_40987377 BC001459 AK291969 AK303089 AK313503 AK131299 NM_001164269	45036	+	TSC_hg19_v1_chr15_+_40987387 D14134 D13804	45101	+	AB022190|CASC5|57082|cancer susceptibility candidate 5##BC014306|CASC5|57082|cancer susceptibility candidate 5##NM_144508|CASC5|57082|cancer susceptibility candidate 5##NM_170589|CASC5|57082|cancer susceptibility candidate 5##AK307605|CASC5|57082|cancer susceptibility candidate 5##AK307996|CASC5|57082|cancer susceptibility candidate 5##AF248041|CASC5|57082|cancer susceptibility candidate 5##AF461041|CASC5|57082|cancer susceptibility candidate 5##BC029373|CASC5|57082|cancer susceptibility candidate 5##AF173994|CASC5|57082|cancer susceptibility candidate 5##BC043597|CASC5|57082|cancer susceptibility candidate 5##AK055971|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK301706|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##NM_152260|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK125393|LOC100505648|100505648|uncharacterized LOC100505648##EU362635|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164270|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_002875|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_133487|RAD51|5888|RAD51 homolog (S. cerevisiae)##BC001459|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK291969|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK303089|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK313503|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK131299|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164269|RAD51|5888|RAD51 homolog (S. cerevisiae)##D14134|RAD51|5888|RAD51 homolog (S. cerevisiae)##D13804|RAD51|5888|RAD51 homolog (S. cerevisiae)	0.997223	0.0	denovo_WM_7:15:0.896
chr6	37097476	37097634	reg1005429.p1	6.925	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-124054	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-143285	-	AK022783 TSC_hg19_v1_chr6_-_36953950 AF176006 AF192559 BC125055 BC153873 NM_014341 BC110914	-143578	-	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	40567	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	127831	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	128044	+	BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK315067|MTCH1|23787|mitochondrial carrier 1##AK022783|MTCH1|23787|mitochondrial carrier 1##AF176006|MTCH1|23787|mitochondrial carrier 1##AF192559|MTCH1|23787|mitochondrial carrier 1##BC125055|MTCH1|23787|mitochondrial carrier 1##BC153873|MTCH1|23787|mitochondrial carrier 1##NM_014341|MTCH1|23787|mitochondrial carrier 1##BC110914|MTCH1|23787|mitochondrial carrier 1##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B	1.026349	0.0	
chr4	113195221	113195383	reg1004096.p2	6.923	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-42218	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-128688	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1632024	-	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	11699	-	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	23225	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	242030	-	NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2	0.999653	0.0	denovo_WM_7:12:0.425	denovo_WM_7:13:0.425
chr6	3279822	3279972	reg1003997.p1	6.921	+	TSC_hg19_v1_chr6_-_3272352 BC090851 BC022217	-7467	-	TSC_hg19_v1_chr6_+_3259232 AK126623 AK095683	-20658	+	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	-20739	+	BC128580 BC128581 BC038748 NM_021945	165310	-	TSC_hg19_v1_chr6_-_3456513 AL110245	176617	-	BC040876 NM_015482	176866	-	BC090851|SLC22A23|63027|solute carrier family 22, member 23##BC022217|SLC22A23|63027|solute carrier family 22, member 23##AK126623|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK095683|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##BC128580|SLC22A23|63027|solute carrier family 22, member 23##BC128581|SLC22A23|63027|solute carrier family 22, member 23##BC038748|SLC22A23|63027|solute carrier family 22, member 23##NM_021945|SLC22A23|63027|solute carrier family 22, member 23##AL110245|SLC22A23|63027|solute carrier family 22, member 23##BC040876|SLC22A23|63027|solute carrier family 22, member 23##NM_015482|SLC22A23|63027|solute carrier family 22, member 23	0.920546	0.983839	denovo_WM_7:-54:0.557	CTCF.p2:73:0.984
chr1	1542638	1542765	reg1005919.p2	6.920	+	TSC_hg19_v1_chr1_-_1535470 AB188495 NM_001242659	-7228	-	TSC_hg19_v1_chr1_-_1510268 NM_014188	-32429	-	TSC_hg19_v1_chr1_-_1510244 BC008070 BC018909	-32470	-	NM_001170686 NM_001170687 NM_001170688 NM_080875 AK302757 AK128553 TSC_hg19_v1_chr1_+_1550895 BC037542 AK122751 AB074480 AB076691 AB076692 AB076693 AK122863 AK123400 BC016490 AB097000	8155	+	TSC_hg19_v1_chr1_-_1551178 BC035078	8420	-	TSC_hg19_v1_chr1_+_1551275 NM_001170689 AK128167 BC035109 AK098785	8599	+	AB188495|LOC643988|643988|uncharacterized LOC643988##NM_001242659|LOC643988|643988|uncharacterized LOC643988##NM_014188|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##BC008070|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##BC018909|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##NM_001170686|MIB2|142678|mindbomb homolog 2 (Drosophila)##NM_001170687|MIB2|142678|mindbomb homolog 2 (Drosophila)##NM_001170688|MIB2|142678|mindbomb homolog 2 (Drosophila)##NM_080875|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK302757|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK128553|MIB2|142678|mindbomb homolog 2 (Drosophila)##BC037542|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK122751|MIB2|142678|mindbomb homolog 2 (Drosophila)##AB074480|MIB2|142678|mindbomb homolog 2 (Drosophila)##AB076691|MIB2|142678|mindbomb homolog 2 (Drosophila)##AB076692|MIB2|142678|mindbomb homolog 2 (Drosophila)##AB076693|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK122863|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK123400|MIB2|142678|mindbomb homolog 2 (Drosophila)##BC016490|MIB2|142678|mindbomb homolog 2 (Drosophila)##AB097000|MIB2|142678|mindbomb homolog 2 (Drosophila)##BC035078|MIB2|142678|mindbomb homolog 2 (Drosophila)##NM_001170689|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK128167|MIB2|142678|mindbomb homolog 2 (Drosophila)##BC035109|MIB2|142678|mindbomb homolog 2 (Drosophila)##AK098785|MIB2|142678|mindbomb homolog 2 (Drosophila)	0.998433	0.0	
chr17	5140917	5141097	reg1005278.p2	6.920	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-2906	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-45627	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-45834	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	44659	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	181918	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	181953	+	DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein	0.0	1.376206	CTCF.p2:18:0.978	CTCF.p2:-68:0.398
chr18	10878711	10878875	reg1005592.p1	6.920	+	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-352696	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-352737	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	-352765	+	NM_022068	269967	-	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	810419	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	872722	+	CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	0.998979	0.0	denovo_WM_7:-4:0.227	denovo_WM_7:-5:0.740
chr18	12839067	12839165	reg1001193.p1	6.919	+	TSC_hg19_v1_chr18_+_12703040 NM_020232 AK225882 AF168712 AK057005 BC013356 CU680576	-136080	+	TSC_hg19_v1_chr18_-_12702776 AK298223	-136352	-	TSC_hg19_v1_chr18_-_12702689 AK022604 BC033026 AL833727 BC026307 NM_024899 AK303117	-136441	-	CU678897 AB590517 BC008244 TSC_hg19_v1_chr18_-_12884237 M25393 AK225706 AK290649 AK292570 BC016727 NM_001207013 NM_002828 NM_080422 NM_080423	45120	-	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	108869	+	TSC_hg19_v1_chr18_+_12948009 AK314403	108890	+	NM_020232|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK225882|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF168712|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK057005|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##BC013356|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK298223|CEP76|79959|centrosomal protein 76kDa##AK022604|CEP76|79959|centrosomal protein 76kDa##BC033026|CEP76|79959|centrosomal protein 76kDa##AL833727|CEP76|79959|centrosomal protein 76kDa##BC026307|CEP76|79959|centrosomal protein 76kDa##NM_024899|CEP76|79959|centrosomal protein 76kDa##AK303117|CEP76|79959|centrosomal protein 76kDa##BC008244|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##M25393|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK225706|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK290649|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK292570|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##BC016727|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001207013|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_002828|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080422|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080423|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)	0.697957	0.0	denovo_WM_7:-52:0.462	denovo_WM_7:-54:0.214
chr2	242786621	242786767	reg1005104.p1	6.918	+	AK091038 AX746745 NM_001167599 NM_001167602 NM_080741 BC012899	-34644	+	TSC_hg19_v1_chr2_+_242750289 AK289421 AK300969 AK025617 AK096992 AK298403 AY203952	-36400	+	NM_001167600 NM_001167601 TSC_hg19_v1_chr2_+_242750226	-36498	+	AY238517 AB590949 AY322430 BC074740 NM_005018 U64863 AK313848	14330	-	AK090909 AX746675 BC113517 BC113519 NM_173821	25188	+	AK309231 TSC_hg19_v1_chr2_+_243030843 AK298283 AK307199	244165	+	AK091038|NEU4|129807|sialidase 4##NM_001167599|NEU4|129807|sialidase 4##NM_001167602|NEU4|129807|sialidase 4##NM_080741|NEU4|129807|sialidase 4##BC012899|NEU4|129807|sialidase 4##AK289421|NEU4|129807|sialidase 4##AK300969|NEU4|129807|sialidase 4##AK025617|NEU4|129807|sialidase 4##AK096992|NEU4|129807|sialidase 4##AK298403|NEU4|129807|sialidase 4##AY203952|NEU4|129807|sialidase 4##NM_001167600|NEU4|129807|sialidase 4##NM_001167601|NEU4|129807|sialidase 4##AY238517|PDCD1|5133|programmed cell death 1##AY322430|PDCD1|5133|programmed cell death 1##BC074740|PDCD1|5133|programmed cell death 1##NM_005018|PDCD1|5133|programmed cell death 1##U64863|PDCD1|5133|programmed cell death 1##AK313848|PDCD1|5133|programmed cell death 1##AK090909|CXXC11|285093|CXXC finger protein 11##BC113517|CXXC11|285093|CXXC finger protein 11##BC113519|CXXC11|285093|CXXC finger protein 11##NM_173821|CXXC11|285093|CXXC finger protein 11##AK298283|LOC728323|728323|uncharacterized LOC728323	0.999365	0.0	
chr4	26828554	26828663	reg1004835.p1	6.918	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-242928	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-336623	-	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-505926	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	33932	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3893391	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3893586	+	NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7	0.0	0.0	
chrX	56791316	56791429	reg1000176.p3	6.918	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-35681	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-201321	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-532462	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	230599	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	356556	-	BC071694 NM_019003	372685	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.40657	CTCF.p2:3:0.407
chr15	59311231	59311348	reg1003195.p2	6.917	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-31010	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-31432	+	TSC_hg19_v1_chr15_-_59225851 BC140851 NM_001013843 NM_024755	-85458	-	TSC_hg19_v1_chr15_+_59359061 AK095327	47789	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	86082	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	187763	+	BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##BC140851|SLTM|79811|SAFB-like, transcription modulator##NM_001013843|SLTM|79811|SAFB-like, transcription modulator##NM_024755|SLTM|79811|SAFB-like, transcription modulator##AK095327|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B	0.990288	0.0	denovo_WM_7:22:0.330	denovo_WM_7:23:0.330	denovo_WM_7:24:0.330
chr3	16592284	16592440	reg1004237.p1	6.917	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-37138	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-37344	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-285654	+	BX648638 AK303026 NM_001190811	53908	-	U65918 U66726 U66078 BC027595 NM_001351	54604	-	AB029015 NM_001144382	334089	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	0.996732	0.429196	denovo_WM_7:-19:0.470	denovo_WM_7:-20:0.527	CTCF.p2:97:0.429
chr9	132789157	132789337	reg1004302.p1	6.916	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-191482	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-191525	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-191563	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	16107	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	16241	-	BC039728 NM_001136557 NM_001136558 NM_020960	26737	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	1.026666	0.0	denovo_WM_7:5:0.239	denovo_WM_7:6:0.239	denovo_WM_7:7:0.239	denovo_WM_7:8:0.239
chr5	81395658	81395813	reg1001092.p1	6.915	+	TSC_hg19_v1_chr5_+_81268100 AL136912	-127637	+	AF318326 TSC_hg19_v1_chr5_+_81267992	-127745	+	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	-127890	+	D14530 TSC_hg19_v1_chr5_-_81574174 AK291132 AK311772 D28396 BC070221	178436	-	TSC_hg19_v1_chr5_-_81574219 NM_001025	178484	-	BC093982 BC112191 NM_001017971	205430	+	AL136912|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AF318326|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##D14530|RPS23|6228|ribosomal protein S23##AK291132|RPS23|6228|ribosomal protein S23##AK311772|RPS23|6228|ribosomal protein S23##D28396|RPS23|6228|ribosomal protein S23##BC070221|RPS23|6228|ribosomal protein S23##NM_001025|RPS23|6228|ribosomal protein S23##BC093982|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC112191|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001017971|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like	2.323709	0.0	denovo_WM_7:34:0.704	denovo_WM_7:102:0.232
chr6	37253935	37254064	reg1004666.p2	6.914	+	TSC_hg19_v1_chr6_+_37252169 BC063523	-1809	+	TSC_hg19_v1_chr6_-_37225916 BC009625 NM_001162900	-28072	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	-28400	+	TSC_hg19_v1_chr6_+_37321758 NM_003958 NM_183078	67759	+	TSC_hg19_v1_chr6_+_37321801 BC007517	67809	+	TSC_hg19_v1_chr6_+_37321829 AB014546 AK222765 AK298319 AK022075 AK308840 AF334675 BT007446 CU675685 DQ890737 DQ893909	67882	+	BC063523|TBC1D22B|55633|TBC1 domain family, member 22B##BC009625|TMEM217|221468|transmembrane protein 217##NM_001162900|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B##NM_003958|RNF8|9025|ring finger protein 8##NM_183078|RNF8|9025|ring finger protein 8##BC007517|RNF8|9025|ring finger protein 8##AB014546|RNF8|9025|ring finger protein 8##AK222765|RNF8|9025|ring finger protein 8##AK298319|RNF8|9025|ring finger protein 8##AK022075|RNF8|9025|ring finger protein 8##AK308840|RNF8|9025|ring finger protein 8##AF334675|RNF8|9025|ring finger protein 8##BT007446|RNF8|9025|ring finger protein 8##DQ890737|RNF8|9025|ring finger protein 8##DQ893909|RNF8|9025|ring finger protein 8	0.99716	0.0	denovo_WM_7:100:0.216	denovo_WM_7:101:0.376	denovo_WM_7:102:0.378
chrX	17036668	17036795	reg1004537.p1	6.914	+	TSC_hg19_v1_chrX_+_16964847 AF010233 NM_001080975 NM_004726 AF511533 AF512951	-71799	+	TSC_hg19_v1_chrX_-_16888462 NM_002893	-148234	-	TSC_hg19_v1_chrX_-_16888456 X72841	-148280	-	TSC_hg19_v1_chrX_+_17393357 AK302437	356623	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	356811	+	TSC_hg19_v1_chrX_+_17393806 BC136415 BC171763	357080	+	AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2##AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2##AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_002893|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7##AK302437|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC136415|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC171763|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)	0.989541	0.0	denovo_WM_7:1:0.713
chr14	75953913	75954018	reg1004173.p1	6.913	+	BC051303 NM_001135049	-55129	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	-58952	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	-59324	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	34825	+	TSC_hg19_v1_chr14_+_75988840 D42106	34887	+	NM_017791 AY260572 AY260577 BC019087 AK000378	91000	+	BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2	0.998397	0.0	denovo_WM_7:3:0.902
chr17	64667358	64667457	reg1005393.p1	6.913	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-368480	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-368657	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-441882	-	AK290171 TSC_hg19_v1_chr17_+_64831234	163828	+	BC101633 NM_145811 BC101607 AF361351 AF458898	206013	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	293482	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.996196	0.0	
chr4	87861042	87861222	reg1005516.p1	6.913	+	TSC_hg19_v1_chr4_+_87857481 L13743	-3649	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-4917	+	BC016746 BC063410 NM_144645	-47572	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	67189	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	107119	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	280530	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	0.0	0.0	
chr13	47224803	47224983	reg1006035.p1	6.911	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-97386	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-97473	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-97570	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	146422	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	246174	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1350558	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.99368	0.0	
chr2	207140282	207140433	reg1005095.p1	6.911	+	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	-890	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	-57659	-	TSC_hg19_v1_chr2_+_207024617 AK291910 AK310096 D28350 BC067787 BC029316 BC004931 AB529032 CU688340 BT007079 CR456825	-115699	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	167976	+	AK129906 TSC_hg19_v1_chr2_+_207406857	266479	+	NM_001102659	366784	+	AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK291910|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK310096|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##D28350|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC067787|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC029316|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC004931|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BT007079|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##CR456825|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23##AK129906|ADAM23|8745|ADAM metallopeptidase domain 23##NM_001102659|LOC200726|200726|hCG1657980	0.903098	0.0	denovo_WM_7:46:0.296	denovo_WM_7:48:0.282
chr7	100777769	100777894	reg1005074.p2	6.911	+	NM_000602 NM_001165413 TSC_hg19_v1_chr7_+_100770384 AK293248 AK297728 AK298048 AK316225 BC020765 X04729 BC010860 X04429 X12701 BC005927 M16006	-7417	+	BC005847 TSC_hg19_v1_chr7_+_100728767 AK092927 AX747810 BC048194 NM_030961 BC011882	-49071	+	TSC_hg19_v1_chr7_+_100663360 AJ606307 AJ606308 NM_001040105	-114466	+	NM_001283 TSC_hg19_v1_chr7_+_100797756 AK312151 BC003561 AB015319	19897	+	BC063835 BC044212 TSC_hg19_v1_chr7_-_100808851 AK225839 NM_003378 BC036537	31021	-	BC037583 BC104841 AK096556 NM_198571	45694	-	NM_000602|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001165413|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK293248|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK297728|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK298048|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK316225|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC020765|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04729|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC010860|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04429|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X12701|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005927|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##M16006|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005847|TRIM56|81844|tripartite motif containing 56##BC048194|TRIM56|81844|tripartite motif containing 56##NM_030961|TRIM56|81844|tripartite motif containing 56##BC011882|TRIM56|81844|tripartite motif containing 56##AJ606307|MUC17|140453|mucin 17, cell surface associated##AJ606308|MUC17|140453|mucin 17, cell surface associated##NM_001040105|MUC17|140453|mucin 17, cell surface associated##NM_001283|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AK312151|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC003561|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AB015319|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC063835|VGF|7425|VGF nerve growth factor inducible##BC044212|VGF|7425|VGF nerve growth factor inducible##AK225839|VGF|7425|VGF nerve growth factor inducible##NM_003378|VGF|7425|VGF nerve growth factor inducible##BC036537|VGF|7425|VGF nerve growth factor inducible##BC037583|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##BC104841|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##AK096556|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##NM_198571|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)	0.994324	0.0	denovo_WM_7:1:0.221	denovo_WM_7:2:0.298	denovo_WM_7:3:0.442
chr7	5721947	5722070	reg1004105.p1	6.910	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	-89498	+	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	-89570	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-151799	-	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	99214	-	BC004947 TSC_hg19_v1_chr7_-_5821284 AK297231 BC063825 AK092767 AX747717 AK297416 BX537406 NM_207111 NM_207116 AK292396	99301	-	TSC_hg19_v1_chr7_+_5862791 AK291169 AK096288	140777	+	BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216##BC004947|RNF216|54476|ring finger protein 216##AK297231|RNF216|54476|ring finger protein 216##BC063825|RNF216|54476|ring finger protein 216##AK092767|RNF216|54476|ring finger protein 216##AK297416|RNF216|54476|ring finger protein 216##BX537406|RNF216|54476|ring finger protein 216##NM_207111|RNF216|54476|ring finger protein 216##NM_207116|RNF216|54476|ring finger protein 216##AK292396|RNF216|54476|ring finger protein 216##AK291169|ZNF815|401303|zinc finger protein 815##AK096288|ZNF815|401303|zinc finger protein 815	1.058272	0.0	denovo_WM_7:42:0.789
chr9	123655060	123655189	reg1004091.p2	6.910	+	BC108663 NM_001009936 NM_015651 TSC_hg19_v1_chr9_-_123639617	-15524	-	TSC_hg19_v1_chr9_-_123639471 AK122744 BC022374 AK303433	-15646	-	AK096706 TSC_hg19_v1_chr9_+_123605361 BX648532 BC028086 BC052374 BC040969	-49750	+	AK295959 NM_001190947	21725	-	AB590501 BT019408 CU692854 TSC_hg19_v1_chr9_-_123688443 U19261 BC024145	33279	-	AK090468 NM_005658	34048	-	BC108663|PHF19|26147|PHD finger protein 19##NM_001009936|PHF19|26147|PHD finger protein 19##NM_015651|PHF19|26147|PHD finger protein 19##AK122744|PHF19|26147|PHD finger protein 19##BC022374|PHF19|26147|PHD finger protein 19##AK303433|PHF19|26147|PHD finger protein 19##AK096706|LOC253039|253039|uncharacterized LOC253039##BX648532|LOC253039|253039|uncharacterized LOC253039##BC028086|LOC253039|253039|uncharacterized LOC253039##BC052374|LOC253039|253039|uncharacterized LOC253039##BC040969|LOC253039|253039|uncharacterized LOC253039##AK295959|TRAF1|7185|TNF receptor-associated factor 1##NM_001190947|TRAF1|7185|TNF receptor-associated factor 1##BT019408|TRAF1|7185|TNF receptor-associated factor 1##U19261|TRAF1|7185|TNF receptor-associated factor 1##BC024145|TRAF1|7185|TNF receptor-associated factor 1##AK090468|TRAF1|7185|TNF receptor-associated factor 1##NM_005658|TRAF1|7185|TNF receptor-associated factor 1	0.0	0.0	
chr12	45241307	45241449	reg1002249.p1	6.909	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-1011472	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-1041266	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-1088599	+	D89629 AK315960 AK299277 NM_001145109	28013	-	BC020544 TSC_hg19_v1_chr12_-_45269991	28599	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	28727	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	1.013071	0.0	denovo_WM_7:-20:0.876
chr6	34314434	34314594	reg1004445.p1	6.908	+	TSC_hg19_v1_chr6_-_34216832 BC009526 NM_001008703 NM_001008704 NM_178508	-97651	-	BC047919 TSC_hg19_v1_chr6_-_34216784 BC023627 AK290164	-97721	-	AK311680 TSC_hg19_v1_chr6_+_34216344	-98164	+	TSC_hg19_v1_chr6_-_34360182 AB463951 BT019984 BT019985 DQ893118 DQ896391 AF062529 AF062530	45687	-	TSC_hg19_v1_chr6_-_34360360 AK313440	45821	-	TSC_hg19_v1_chr6_-_34360425 BC007727	45906	-	BC009526|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008703|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008704|C6orf1|221491|chromosome 6 open reading frame 1##NM_178508|C6orf1|221491|chromosome 6 open reading frame 1##BC047919|C6orf1|221491|chromosome 6 open reading frame 1##BC023627|C6orf1|221491|chromosome 6 open reading frame 1##AK290164|C6orf1|221491|chromosome 6 open reading frame 1##BT019984|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BT019985|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ893118|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ896391|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062529|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062530|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AK313440|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BC007727|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3	0.995975	0.0	denovo_WM_7:7:0.561	denovo_WM_7:9:0.214
chr10	82301112	82301240	reg1005828.p1	6.905	+	AK123978 NM_001145719	-602	+	AK123885 NM_207372	-3519	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-87072	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	1333906	+	DQ857894 NM_001165973	1336266	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	3598081	+	AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##BC002920|TSPAN14|81619|tetraspanin 14##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein	0.0	0.0	
chr14	55566319	55566436	reg1004561.p1	6.905	+	AK025580 TSC_hg19_v1_chr14_+_55518408 BC015621	-47946	+	TSC_hg19_v1_chr14_+_55518382 AL834285	-48000	+	TSC_hg19_v1_chr14_+_55518364 NM_144578 AK315501	-48037	+	TSC_hg19_v1_chr14_+_55595963 NM_001177388 NM_002306 AK314929	29571	+	TSC_hg19_v1_chr14_+_55595969 AB006780 BC053667 BC068068 M36682 BC001120 M35368 M57710	29608	+	TSC_hg19_v1_chr14_-_55650349 BT007344	84029	-	AK025580|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##BC015621|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AL834285|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##NM_144578|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AK315501|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##NM_001177388|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_002306|LGALS3|3958|lectin, galactoside-binding, soluble, 3##AK314929|LGALS3|3958|lectin, galactoside-binding, soluble, 3##AB006780|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC053667|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC068068|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M36682|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC001120|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M35368|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M57710|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BT007344|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5	0.998839	0.0	
chr2	102673951	102674131	reg1003111.p2	6.905	+	BC027733 BC012346 NM_173343	-58584	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-65678	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-165509	+	TSC_hg19_v1_chr2_+_102759205 X16896	85191	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	96379	+	AF284434 NM_003854 U49065 BC107064	129407	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.0	0.0	
chr3	12690132	12690289	reg1005322.p4	6.905	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-91630	+	NM_001195279	-103248	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-163974	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	15257	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	15405	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	15464	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.840001	0.0	denovo_WM_7:40:0.660
chr10	30637897	30638047	reg1000237.p1	6.903	+	TSC_hg19_v1_chr10_-_30348516 AK308850 NM_020848 BC071601	-289478	-	TSC_hg19_v1_chr10_-_30316350 BC047548	-321541	-	TSC_hg19_v1_chr10_-_30025865 AK307640	-612066	-	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	261	-	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	84967	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	85149	+	AK308850|KIAA1462|57608|KIAA1462##NM_020848|KIAA1462|57608|KIAA1462##BC071601|KIAA1462|57608|KIAA1462##BC047548|KIAA1462|57608|KIAA1462##AK307640|SVIL|6840|supervillin##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8	0.0	0.0	
chr2	106799660	106799776	reg1005225.p2	6.903	+	BC021742 AF325503 NM_032411 TSC_hg19_v1_chr2_+_106682146 AY358601 DQ892412 DQ895626	-117554	+	NM_001004720 BC000103	-331457	+	TSC_hg19_v1_chr2_+_106432941 AF047487 BC007195	-366743	+	BC009819 AY147934 AY358541 TSC_hg19_v1_chr2_-_106810753 AK290668 AK304872	11027	-	AK075120 AK075170 TSC_hg19_v1_chr2_-_106810758 AK122696	11040	-	TSC_hg19_v1_chr2_-_106810781 NM_025076	11087	-	BC021742|C2orf40|84417|chromosome 2 open reading frame 40##AF325503|C2orf40|84417|chromosome 2 open reading frame 40##NM_032411|C2orf40|84417|chromosome 2 open reading frame 40##AY358601|C2orf40|84417|chromosome 2 open reading frame 40##DQ892412|C2orf40|84417|chromosome 2 open reading frame 40##DQ895626|C2orf40|84417|chromosome 2 open reading frame 40##NM_001004720|NCK2|8440|NCK adaptor protein 2##BC000103|NCK2|8440|NCK adaptor protein 2##AF047487|NCK2|8440|NCK adaptor protein 2##BC007195|NCK2|8440|NCK adaptor protein 2##BC009819|UXS1|80146|UDP-glucuronate decarboxylase 1##AY147934|UXS1|80146|UDP-glucuronate decarboxylase 1##AY358541|UXS1|80146|UDP-glucuronate decarboxylase 1##AK290668|UXS1|80146|UDP-glucuronate decarboxylase 1##AK304872|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075120|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075170|UXS1|80146|UDP-glucuronate decarboxylase 1##AK122696|UXS1|80146|UDP-glucuronate decarboxylase 1##NM_025076|UXS1|80146|UDP-glucuronate decarboxylase 1	0.999858	0.0	
chr2	162027472	162027628	reg1006600.p1	6.903	+	TSC_hg19_v1_chr2_+_162016938 AK313096 NM_001199135 BC067779	-10601	+	NM_004180 NM_133484 U59863 U63830	-34085	+	BC018951 TSC_hg19_v1_chr2_-_161350319 NM_002897 NM_016836	-677233	-	NM_005805 TSC_hg19_v1_chr2_+_162164936 BC066336	137312	+	TSC_hg19_v1_chr2_+_162164996 U86782	137473	+	NM_006593 BC104844 BC113418 TSC_hg19_v1_chr2_+_162272726	245131	+	AK313096|TANK|10010|TRAF family member-associated NFKB activator##NM_001199135|TANK|10010|TRAF family member-associated NFKB activator##BC067779|TANK|10010|TRAF family member-associated NFKB activator##NM_004180|TANK|10010|TRAF family member-associated NFKB activator##NM_133484|TANK|10010|TRAF family member-associated NFKB activator##U59863|TANK|10010|TRAF family member-associated NFKB activator##U63830|TANK|10010|TRAF family member-associated NFKB activator##BC018951|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_002897|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_016836|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_005805|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##BC066336|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##U86782|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##NM_006593|TBR1|10716|T-box, brain, 1##BC104844|TBR1|10716|T-box, brain, 1##BC113418|TBR1|10716|T-box, brain, 1	0.953806	0.0	denovo_WM_7:-35:0.767
chr2	65352143	65352297	reg1006594.p1	6.903	+	TSC_hg19_v1_chr2_+_65283579 AB011154 NM_015147 AK093846 AK000856 AK299373 AK304110 AK301173 AK098786 BX648774 BC030534 BC002982 BC004873	-68660	+	TSC_hg19_v1_chr2_+_65216532 AK223486 AK313052 BC072423 BC026216 L14595 L19444 AB026689 DQ891127 DQ894306	-135570	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	-135729	+	AF498929 BT019528 BT019529 CR533479 CR536488 AB464118 AB590355 AM392684 CU674450 DQ894084 EU831590 EU831675 TSC_hg19_v1_chr2_-_65357083 M28209	4855	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	4999	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	5121	-	AB011154|CEP68|23177|centrosomal protein 68kDa##NM_015147|CEP68|23177|centrosomal protein 68kDa##AK093846|CEP68|23177|centrosomal protein 68kDa##AK000856|CEP68|23177|centrosomal protein 68kDa##AK299373|CEP68|23177|centrosomal protein 68kDa##AK304110|CEP68|23177|centrosomal protein 68kDa##AK301173|CEP68|23177|centrosomal protein 68kDa##AK098786|CEP68|23177|centrosomal protein 68kDa##BX648774|CEP68|23177|centrosomal protein 68kDa##BC030534|CEP68|23177|centrosomal protein 68kDa##BC002982|CEP68|23177|centrosomal protein 68kDa##BC004873|CEP68|23177|centrosomal protein 68kDa##AK223486|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK313052|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC072423|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC026216|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L14595|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L19444|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB026689|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ891127|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ894306|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AF498929|RAB1A|5861|RAB1A, member RAS oncogene family##BT019528|RAB1A|5861|RAB1A, member RAS oncogene family##BT019529|RAB1A|5861|RAB1A, member RAS oncogene family##CR533479|RAB1A|5861|RAB1A, member RAS oncogene family##CR536488|RAB1A|5861|RAB1A, member RAS oncogene family##AM392684|RAB1A|5861|RAB1A, member RAS oncogene family##DQ894084|RAB1A|5861|RAB1A, member RAS oncogene family##EU831590|RAB1A|5861|RAB1A, member RAS oncogene family##EU831675|RAB1A|5861|RAB1A, member RAS oncogene family##M28209|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family	0.991799	0.0	denovo_WM_7:-27:0.836
chr4	25876852	25877032	reg1004081.p1	6.903	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-12388	-	NM_001177999 AK314514	-218852	+	NM_001177998 NM_006424 AK292675 AF111856 AK075046 TSC_hg19_v1_chr4_+_25657473 AF146796 BC142704 BC146666	-219482	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	38922	+	L07875 BC020780 NM_005349 NM_203283	444377	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	445367	+	BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001177998|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_006424|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK292675|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF111856|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK075046|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF146796|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC142704|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC146666|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.798954	0.0	denovo_WM_7:43:0.693
chr18	2982837	2982988	reg1006854.p1	6.901	+	AB026706 TSC_hg19_v1_chr18_+_2907037	-75911	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	-135881	+	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	-326998	+	BC152448 D87436 NM_014646	29032	-	BC116183 BC116184 TSC_hg19_v1_chr18_-_3219875	236948	-	TSC_hg19_v1_chr18_-_3219987 AJ621424 AK125322 NM_003803 NM_019856	237133	-	AB026706|EMILIN2|84034|elastin microfibril interfacer 2##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##BC152448|LPIN2|9663|lipin 2##D87436|LPIN2|9663|lipin 2##NM_014646|LPIN2|9663|lipin 2##BC116183|MYOM1|8736|myomesin 1, 185kDa##BC116184|MYOM1|8736|myomesin 1, 185kDa##AJ621424|MYOM1|8736|myomesin 1, 185kDa##AK125322|MYOM1|8736|myomesin 1, 185kDa##NM_003803|MYOM1|8736|myomesin 1, 185kDa##NM_019856|MYOM1|8736|myomesin 1, 185kDa	0.996981	0.0	denovo_WM_7:-2:0.972
chr19	50092269	50092415	reg1006716.p1	6.901	+	NM_000951 BC026032	-7735	+	AF132959 TSC_hg19_v1_chr19_-_50083814	-8528	-	BC047314 TSC_hg19_v1_chr19_-_50083811 BC009299 BC010077 NM_015953 AK092444 AX747549 AK291535 AK300720	-8541	-	NM_020719	2569	+	TSC_hg19_v1_chr19_-_50143401 AF493920 BT006805 CR541944 CR541967 AB528722 DQ890730 DQ892428 DQ895642 BC016286 BC016318 NM_006270	51035	-	TSC_hg19_v1_chr19_+_50145476 AK024444 NM_021228 BC011662	53088	+	NM_000951|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##BC026032|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##AF132959|NOSIP|51070|nitric oxide synthase interacting protein##BC047314|NOSIP|51070|nitric oxide synthase interacting protein##BC009299|NOSIP|51070|nitric oxide synthase interacting protein##BC010077|NOSIP|51070|nitric oxide synthase interacting protein##NM_015953|NOSIP|51070|nitric oxide synthase interacting protein##AK092444|NOSIP|51070|nitric oxide synthase interacting protein##AK291535|NOSIP|51070|nitric oxide synthase interacting protein##AK300720|NOSIP|51070|nitric oxide synthase interacting protein##NM_020719|PRR12|57479|proline rich 12##AF493920|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BT006805|RRAS|6237|related RAS viral (r-ras) oncogene homolog##CR541944|RRAS|6237|related RAS viral (r-ras) oncogene homolog##CR541967|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ890730|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ892428|RRAS|6237|related RAS viral (r-ras) oncogene homolog##DQ895642|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BC016286|RRAS|6237|related RAS viral (r-ras) oncogene homolog##BC016318|RRAS|6237|related RAS viral (r-ras) oncogene homolog##NM_006270|RRAS|6237|related RAS viral (r-ras) oncogene homolog##AK024444|SCAF1|58506|SR-related CTD-associated factor 1##NM_021228|SCAF1|58506|SR-related CTD-associated factor 1##BC011662|SCAF1|58506|SR-related CTD-associated factor 1	0.9946	0.0	
chr4	47012916	47013080	reg1005354.p1	6.901	+	AK090780 NM_000809	-16575	-	CU690038 DQ891679 DQ894864 EU176605 U30461 NM_001204266 NM_001204267 BC035055	-17502	-	BC107855 BC035923 AX721204 NM_130902	-101761	-	NM_000812 AK296023	20349	+	TSC_hg19_v1_chr4_-_47465683 AY542163 BC015145 NM_017845 AK000509 BC019826 AF182421	452681	-	TSC_hg19_v1_chr4_-_47465720 BC008371	452730	-	AK090780|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_000809|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ891679|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ894864|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##EU176605|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##U30461|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204266|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204267|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##BC035055|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##BC107855|COX7B2|170712|cytochrome c oxidase subunit VIIb2##BC035923|COX7B2|170712|cytochrome c oxidase subunit VIIb2##NM_130902|COX7B2|170712|cytochrome c oxidase subunit VIIb2##NM_000812|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AK296023|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AY542163|COMMD8|54951|COMM domain containing 8##BC015145|COMMD8|54951|COMM domain containing 8##NM_017845|COMMD8|54951|COMM domain containing 8##AK000509|COMMD8|54951|COMM domain containing 8##BC019826|COMMD8|54951|COMM domain containing 8##AF182421|COMMD8|54951|COMM domain containing 8##BC008371|COMMD8|54951|COMM domain containing 8	0.017822	0.0	
chr6	149794198	149794353	reg1005347.p1	6.901	+	AY340238 NM_001002255 BC130305 HQ258040	-72767	+	AK315038 NM_015093 AK307650	-154834	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	-155172	+	TSC_hg19_v1_chr6_-_149806031 AK127932	11792	-	TSC_hg19_v1_chr6_-_149806151 AB458221 AB458222 BC157832 NM_207360	11868	-	TSC_hg19_v1_chr6_-_149867153 CU676802 GQ129364 GQ129365 BC064134	72869	-	AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK127932|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458221|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458222|ZC3H12D|340152|zinc finger CCCH-type containing 12D##BC157832|ZC3H12D|340152|zinc finger CCCH-type containing 12D##NM_207360|ZC3H12D|340152|zinc finger CCCH-type containing 12D##GQ129364|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129365|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC064134|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4	0.996816	0.056274	denovo_WM_7:2:0.919
chr2	216974927	216975069	reg1005675.p1	6.900	+	TSC_hg19_v1_chr2_+_216974124 J04977 M30938 AK290740 BC095442 BC019027 AB489155 CU676354 DQ892660 DQ895925	-859	+	TSC_hg19_v1_chr2_+_216974112 AK222603	-889	+	TSC_hg19_v1_chr2_+_216974084 NM_021141	-946	+	TSC_hg19_v1_chr2_+_216986829 AK026166	11869	+	TSC_hg19_v1_chr2_-_217236666 AB037820 NM_020814	261709	-	NM_014140 TSC_hg19_v1_chr2_+_217277188 AK023780	302200	+	J04977|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##M30938|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK290740|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC095442|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC019027|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ892660|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ895925|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK222603|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##NM_021141|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK026166|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AB037820|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_020814|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_014140|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AK023780|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	0.2759	0.080519	
chr2	217058887	217059015	reg1005421.p1	6.900	+	TSC_hg19_v1_chr2_+_216986829 AK026166	-72084	+	TSC_hg19_v1_chr2_+_216974124 J04977 M30938 AK290740 BC095442 BC019027 AB489155 CU676354 DQ892660 DQ895925	-84812	+	TSC_hg19_v1_chr2_+_216974112 AK222603	-84842	+	TSC_hg19_v1_chr2_-_217236666 AB037820 NM_020814	177756	-	NM_014140 TSC_hg19_v1_chr2_+_217277188 AK023780	218247	+	TSC_hg19_v1_chr2_+_217277487 NM_001127207 AF432223 BC043341	218527	+	AK026166|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##J04977|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##M30938|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK290740|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC095442|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC019027|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ892660|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ895925|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK222603|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AB037820|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_020814|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_014140|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AK023780|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##NM_001127207|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AF432223|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##BC043341|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	0.0	0.0	
chr10	104941070	104941231	reg1006078.p1	6.899	+	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	-263093	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-311893	+	NM_001136200 NM_144591 AL832477 TSC_hg19_v1_chr10_+_104614015 AK098071 BC015994 BC040069 AK311742	-327149	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	11897	-	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	64523	+	TSC_hg19_v1_chr10_+_105036894 BC006359 NM_032727 S78296 DQ892733 DQ895980	95723	+	BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##NM_001136200|C10orf32|119032|chromosome 10 open reading frame 32##NM_144591|C10orf32|119032|chromosome 10 open reading frame 32##AL832477|C10orf32|119032|chromosome 10 open reading frame 32##AK098071|C10orf32|119032|chromosome 10 open reading frame 32##BC015994|C10orf32|119032|chromosome 10 open reading frame 32##BC040069|C10orf32-AS3MT|100528007|C10orf32-AS3MT readthrough##AK311742|C10orf32|119032|chromosome 10 open reading frame 32##BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE##BC006359|INA|9118|internexin neuronal intermediate filament protein, alpha##NM_032727|INA|9118|internexin neuronal intermediate filament protein, alpha##S78296|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ892733|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ895980|INA|9118|internexin neuronal intermediate filament protein, alpha	0.991227	0.0	denovo_WM_7:-50:0.752
chr2	101628595	101628725	reg1006185.p1	6.899	+	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-9938	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-191894	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	-449224	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	139123	-	TSC_hg19_v1_chr2_+_101869347 NM_017546	240677	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	240732	+	NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29	0.0	0.0	
chr3	130465976	130466078	reg1003553.p2	6.899	+	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	-424	-	AM774225 NM_001102608	-186850	+	EU085556 NM_153264 AM906078	-401609	+	NM_001199180 NM_001199181 NM_001199182 AK296470	103379	+	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	147118	+	AK301388 BC069265 AK027806 NM_014065 AK294156	279613	-	BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##EU085556|COL6A5|256076|collagen, type VI, alpha 5##NM_153264|COL6A5|256076|collagen, type VI, alpha 5##AM906078|COL6A5|256076|collagen, type VI, alpha 5##NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK301388|ASTE1|28990|asteroid homolog 1 (Drosophila)##BC069265|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK027806|ASTE1|28990|asteroid homolog 1 (Drosophila)##NM_014065|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK294156|ASTE1|28990|asteroid homolog 1 (Drosophila)	2.389852	0.0	denovo_WM_7:76:0.586	denovo_WM_7:77:0.293	denovo_WM_7:91:0.299	denovo_WM_7:92:0.395	denovo_WM_7:93:0.296	denovo_WM_7:107:0.299
chr3	45931041	45931221	reg1004415.p2	6.896	+	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	-3076	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-47536	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-92983	-	NM_006564 Y13248	53841	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	106190	-	AB189434 AB189435 NM_001024644 NM_005283	137847	-	NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1	0.996328	0.0	denovo_WM_7:53:0.261	denovo_WM_7:54:0.450
chr8	17785585	17785765	reg1000328.p2	6.895	+	TSC_hg19_v1_chr8_+_17780529 BC065022 BC027477 BC140946	-5152	+	TSC_hg19_v1_chr8_+_17780501 BC000453	-5170	+	TSC_hg19_v1_chr8_+_17780498 AK307583 BC098391	-5180	+	TSC_hg19_v1_chr8_+_17822094 AF068293	36435	+	TSC_hg19_v1_chr8_+_17829865 AK091406 AX746961 AK302378	44294	+	AB528408 CU677637 DQ891071 DQ894254 U70063 TSC_hg19_v1_chr8_-_17941584 U47674	155901	-	BC065022|PCM1|5108|pericentriolar material 1##BC027477|PCM1|5108|pericentriolar material 1##BC140946|PCM1|5108|pericentriolar material 1##BC000453|PCM1|5108|pericentriolar material 1##AK307583|PCM1|5108|pericentriolar material 1##AF068293|PCM1|5108|pericentriolar material 1##AK091406|PCM1|5108|pericentriolar material 1##AK302378|PCM1|5108|pericentriolar material 1##DQ891071|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##DQ894254|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U70063|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U47674|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1	0.0	0.0	
chr12	13365144	13365252	reg1005574.p1	6.894	+	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-15469	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-15481	+	NM_001423 U77085 TSC_hg19_v1_chr12_+_13349659 AK310798 AK308505 BC047300	-15560	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	767788	-	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	1153437	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	1173074	+	AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##NM_001423|EMP1|2012|epithelial membrane protein 1##U77085|EMP1|2012|epithelial membrane protein 1##AK310798|EMP1|2012|epithelial membrane protein 1##AK308505|EMP1|2012|epithelial membrane protein 1##BC047300|EMP1|2012|epithelial membrane protein 1##BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein	0.287601	0.501581	CTCF.p2:5:0.502
chr14	64320824	64320970	reg1004638.p1	6.894	+	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	-1202	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-126148	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-212335	-	NM_182913 AY061758 AK297874	359980	+	NM_182910	361774	+	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	428766	-	NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)	0.998338	0.0	denovo_WM_7:-6:0.457	denovo_WM_7:-7:0.457
chr3	177055706	177055886	reg1005944.p2	6.894	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-140737	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-140845	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-141546	-	BC017825 NM_181361	1198427	+	AF209747 NM_005832	1220756	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	1733769	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	0.991757	0.0	denovo_WM_7:16:0.889
chr3	42881741	42881907	reg1006095.p2	6.894	+	BC011588 BC018716 BC020558 NM_001296 AK313561 BC008816 BC011631	-30855	+	TSC_hg19_v1_chr3_+_42846151 BC033952	-35664	+	TSC_hg19_v1_chr3_-_42845983 AK225461 BC009583 BC009594 BC000601 AF145385 AF077034 BC070277 AK225571 AK311815 AL110233 NM_001099669 NM_014056	-35838	-	AF090318 TSC_hg19_v1_chr3_-_42917348 BC067434 BC067441 BC067442 BC067443 BC067444 AK315330 AK310784	35506	-	NM_004391	35808	-	AK127779 NM_207404	65577	+	BC011588|CCBP2|1238|chemokine binding protein 2##BC018716|CCBP2|1238|chemokine binding protein 2##BC020558|CCBP2|1238|chemokine binding protein 2##NM_001296|CCBP2|1238|chemokine binding protein 2##AK313561|CCBP2|1238|chemokine binding protein 2##BC008816|CCBP2|1238|chemokine binding protein 2##BC011631|CCBP2|1238|chemokine binding protein 2##AK225461|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##BC009583|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##BC009594|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##BC000601|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##AF145385|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##AF077034|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##BC070277|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##AK225571|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##AK311815|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##AL110233|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##NM_001099669|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##NM_014056|HIGD1A|25994|HIG1 hypoxia inducible domain family, member 1A##AF090318|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##BC067434|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##BC067441|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##BC067442|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##BC067443|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##BC067444|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##AK310784|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##NM_004391|CYP8B1|1582|cytochrome P450, family 8, subfamily B, polypeptide 1##AK127779|ZNF662|389114|zinc finger protein 662##NM_207404|ZNF662|389114|zinc finger protein 662	1.548784	0.018009	denovo_WM_7:-48:0.534	denovo_WM_7:-63:0.308	denovo_WM_7:-64:0.318
chr5	142547881	142548037	reg1003690.p1	6.894	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-397651	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-397987	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-470388	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	234864	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	235147	-	BC015610 TSC_hg19_v1_chr5_-_142783214	235252	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	1.986224	0.0	denovo_WM_7:59:0.539	denovo_WM_7:60:0.270	denovo_WM_7:74:0.329	denovo_WM_7:75:0.599
chr11	128189064	128189203	reg1004828.p2	6.893	+	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1315828	+	TSC_hg19_v1_chr11_-_126870685 AY358743 NM_001161707 NM_032531	-1318408	-	AB058770 BC071838 TSC_hg19_v1_chr11_-_126870667	-1318473	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	202830	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	203001	-	BX640634 NM_001143820	268319	-	BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##AY358743|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_001161707|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_032531|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AB058770|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##BC071838|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	1.180115	0.0	denovo_WM_7:49:0.435	denovo_WM_7:50:0.435
chr8	121821572	121821752	reg1005033.p1	6.891	+	TSC_hg19_v1_chr8_+_121457658 AK022122 AK300762 BC013136 NM_022045 EU176294 EU176618	-363986	+	BC021744 NM_014078	-364027	-	TSC_hg19_v1_chr8_-_121457391 AK311924	-364269	-	TSC_hg19_v1_chr8_+_121823539 AK302130	1879	+	TSC_hg19_v1_chr8_-_121823718 AF028828	2099	-	TSC_hg19_v1_chr8_-_121824090 AB590740	2401	-	AK022122|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##AK300762|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC013136|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##NM_022045|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176294|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176618|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##AF028828|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	0.657342	0.0	denovo_WM_7:24:0.385	denovo_WM_7:28:0.240
chr19	54997192	54997343	reg1000535.p2	6.890	+	BC065910 TSC_hg19_v1_chr19_-_54984370 BC024327 NM_145057	-12886	-	BC015921 NM_198988	-22374	-	AL833879 TSC_hg19_v1_chr19_+_54965768	-31555	+	NM_002288 NM_021270 BC057790 AF013250 BC069366 CU686777 HQ448404 EF174570	16806	+	AK310088 TSC_hg19_v1_chr19_+_55084486	87218	+	TSC_hg19_v1_chr19_+_55085256 NM_001130917 NM_006866 U82275 AK130170	87985	+	BC065910|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC024327|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##NM_145057|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC015921|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_198988|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_002288|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##NM_021270|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC057790|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AF013250|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC069366|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##HQ448404|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##EF174570|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AK310088|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_001130917|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_006866|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82275|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##AK130170|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2	1.46345	0.0	denovo_WM_7:99:0.808
chr1	12104737	12104917	reg1006359.p2	6.889	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-25257	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-25293	+	FJ618905 NM_021933	-25529	+	M83554 NM_001243 BC136400 BC171762 S75768	18717	+	D86042 BC063482 NM_152942 BC073839 BC141804	81189	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	122234	+	AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##FJ618905|MIIP|60672|migration and invasion inhibitory protein##NM_021933|MIIP|60672|migration and invasion inhibitory protein##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.97516	0.0	denovo_WM_7:-26:0.808
chr4	164511410	164511545	reg1004412.p2	6.889	+	TSC_hg19_v1_chr4_+_164415868 BC011842	-95604	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-95635	+	TSC_hg19_v1_chr4_+_164415817 BC017418 AK298235	-95661	+	AB463878 AK000675 AK301408 NM_017923	23238	-	NM_012403	607385	-	AK289711 NM_001166373	792929	-	BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##BC017418|C4orf43|55319|chromosome 4 open reading frame 43##AK298235|C4orf43|55319|chromosome 4 open reading frame 43##AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1	0.999977	0.0	denovo_WM_7:-60:0.457	denovo_WM_7:-61:0.457
chr11	65333548	65333684	reg1007650.p1	6.888	+	TSC_hg19_v1_chr11_-_65326129 AK299351	-7426	-	TSC_hg19_v1_chr11_-_65325673 AK024477 NM_001130144 NM_001164266 NM_021070	-7748	-	TSC_hg19_v1_chr11_-_65325391 AF135960 BC136277	-8167	-	AF085877 TSC_hg19_v1_chr11_-_65337892 AK057616	4203	-	TSC_hg19_v1_chr11_+_65337947 AB001740 NM_006396 BC014791 DQ891782 DQ894966	4326	+	BC032373 NM_001098784 NM_001098785 NM_152832 AF052151 TSC_hg19_v1_chr11_+_65340004	6315	+	AK299351|LTBP3|4054|latent transforming growth factor beta binding protein 3##AK024477|LTBP3|4054|latent transforming growth factor beta binding protein 3##NM_001130144|LTBP3|4054|latent transforming growth factor beta binding protein 3##NM_001164266|LTBP3|4054|latent transforming growth factor beta binding protein 3##NM_021070|LTBP3|4054|latent transforming growth factor beta binding protein 3##AF135960|LTBP3|4054|latent transforming growth factor beta binding protein 3##BC136277|LTBP3|4054|latent transforming growth factor beta binding protein 3##AF085877|LOC254100|254100|uncharacterized LOC254100##AK057616|LOC254100|254100|uncharacterized LOC254100##AB001740|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##NM_006396|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##BC014791|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##DQ891782|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##DQ894966|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##BC032373|FAM89B|23625|family with sequence similarity 89, member B##NM_001098784|FAM89B|23625|family with sequence similarity 89, member B##NM_001098785|FAM89B|23625|family with sequence similarity 89, member B##NM_152832|FAM89B|23625|family with sequence similarity 89, member B##AF052151|FAM89B|23625|family with sequence similarity 89, member B	0.993372	0.0	
chr17	38835296	38835476	reg1006738.p1	6.888	+	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	-14036	-	BC069196 TSC_hg19_v1_chr17_-_38804818	-30590	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	-31316	-	BC111964 BC111968 AK000268 NM_019016	24602	-	AB463812 AJ564204 AK129503 NM_181534	76167	-	BC132951 BC136896 AJ564205 NM_181539	93019	-	BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC111964|KRT24|192666|keratin 24##BC111968|KRT24|192666|keratin 24##AK000268|KRT24|192666|keratin 24##NM_019016|KRT24|192666|keratin 24##AJ564204|KRT25|147183|keratin 25##AK129503|KRT25|147183|keratin 25##NM_181534|KRT25|147183|keratin 25##BC132951|KRT26|353288|keratin 26##BC136896|KRT26|353288|keratin 26##AJ564205|KRT26|353288|keratin 26##NM_181539|KRT26|353288|keratin 26	0.984434	0.0	denovo_WM_7:92:0.797
chr7	30370359	30370515	reg1005477.p2	6.888	+	TSC_hg19_v1_chr7_+_30324634 AY054122	-45781	+	TSC_hg19_v1_chr7_+_30324515 AF527533	-45888	+	AF513707 NM_147128	-46515	+	AY128682 AY128683 AY128684 AY128685 AY128686 AF113925 BC040339 AK300367 AK023969 NM_006092	147884	-	CU674304 TSC_hg19_v1_chr7_-_30544445 BC013937 BC005356 AK315608 BC019243 BC000625 NM_001199815 NM_001199816 NM_001199817 NM_024051	173964	-	NM_002047	263743	+	AY054122|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AY128682|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128683|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128684|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128685|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128686|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AF113925|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC040339|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK300367|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK023969|NOD1|10392|nucleotide-binding oligomerization domain containing 1##NM_006092|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC013937|GGCT|79017|gamma-glutamylcyclotransferase##BC005356|GGCT|79017|gamma-glutamylcyclotransferase##AK315608|GGCT|79017|gamma-glutamylcyclotransferase##BC019243|GGCT|79017|gamma-glutamylcyclotransferase##BC000625|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199815|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199816|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199817|GGCT|79017|gamma-glutamylcyclotransferase##NM_024051|GGCT|79017|gamma-glutamylcyclotransferase##NM_002047|GARS|2617|glycyl-tRNA synthetase	0.992909	0.0	denovo_WM_7:-42:0.956
chr11	111919601	111919711	reg1004269.p2	6.887	+	TSC_hg19_v1_chr11_+_111896166 AK296274 AK303930 AK297103 AF317200 AK223596 AL832703 BC039084 DQ892447 DQ895658 CU691660 Y00978 AK299562	-23448	+	AK057299 NM_001931	-24119	+	TSC_hg19_v1_chr11_+_111848069 NM_033425 AK289807 BC033034 AB051522	-71590	+	AK300496 NM_001082619 NM_138789	25169	-	NM_001082969 NM_001082970 NM_018195 BX538107 AK125340 AK094203 BC048133 BC072455 AB096251	25359	+	TSC_hg19_v1_chr11_-_111957481 AF165967 AF152350 AF150087 BC000711 AK312169 AK025397 BC105986 BC106067 NM_012459	37815	-	AK296274|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK303930|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK297103|DLAT|1737|dihydrolipoamide S-acetyltransferase##AF317200|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK223596|DLAT|1737|dihydrolipoamide S-acetyltransferase##AL832703|DLAT|1737|dihydrolipoamide S-acetyltransferase##BC039084|DLAT|1737|dihydrolipoamide S-acetyltransferase##DQ892447|DLAT|1737|dihydrolipoamide S-acetyltransferase##DQ895658|DLAT|1737|dihydrolipoamide S-acetyltransferase##Y00978|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK299562|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK057299|DLAT|1737|dihydrolipoamide S-acetyltransferase##NM_001931|DLAT|1737|dihydrolipoamide S-acetyltransferase##NM_033425|DIXDC1|85458|DIX domain containing 1##AK289807|DIXDC1|85458|DIX domain containing 1##BC033034|DIXDC1|85458|DIX domain containing 1##AB051522|DIXDC1|85458|DIX domain containing 1##AK300496|PIH1D2|120379|PIH1 domain containing 2##NM_001082619|PIH1D2|120379|PIH1 domain containing 2##NM_138789|PIH1D2|120379|PIH1 domain containing 2##NM_001082969|C11orf57|55216|chromosome 11 open reading frame 57##NM_001082970|C11orf57|55216|chromosome 11 open reading frame 57##NM_018195|C11orf57|55216|chromosome 11 open reading frame 57##BX538107|C11orf57|55216|chromosome 11 open reading frame 57##AK125340|C11orf57|55216|chromosome 11 open reading frame 57##AK094203|C11orf57|55216|chromosome 11 open reading frame 57##BC048133|C11orf57|55216|chromosome 11 open reading frame 57##BC072455|C11orf57|55216|chromosome 11 open reading frame 57##AB096251|C11orf57|55216|chromosome 11 open reading frame 57##AF165967|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF152350|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF150087|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC000711|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK312169|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK025397|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC105986|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC106067|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##NM_012459|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)	1.148194	0.0	
chr17	21035811	21035959	reg1005631.p1	6.887	+	TSC_hg19_v1_chr17_+_21030251 NM_015510 AL117567 AF151851 BC004126 BC009679 AK124055 CR457124	-5609	+	TSC_hg19_v1_chr17_+_20978860 AB593144	-57004	+	TSC_hg19_v1_chr17_-_20946322 AB590105 AB028986 NM_015276	-89613	-	TSC_hg19_v1_chr17_-_21117475 BT006768 AK311965 BC020815	81569	-	TSC_hg19_v1_chr17_-_21117480 BC002819	81603	-	TSC_hg19_v1_chr17_-_21117651 X51804	81791	-	NM_015510|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AL117567|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AF151851|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##BC004126|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##BC009679|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AK124055|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##CR457124|DHRS7B|25979|dehydrogenase/reductase (SDR family) member 7B##AB028986|USP22|23326|ubiquitin specific peptidase 22##NM_015276|USP22|23326|ubiquitin specific peptidase 22##BT006768|TMEM11|8834|transmembrane protein 11##AK311965|TMEM11|8834|transmembrane protein 11##BC020815|TMEM11|8834|transmembrane protein 11##BC002819|TMEM11|8834|transmembrane protein 11##X51804|TMEM11|8834|transmembrane protein 11	1.945157	0.0	denovo_WM_7:-18:0.851	denovo_WM_7:-33:0.902
chr5	56125099	56125279	reg1005751.p2	6.887	+	TSC_hg19_v1_chr5_+_56111395 AF042838	-13771	+	TSC_hg19_v1_chr5_+_56111375 AK307828	-13825	+	NM_005921	-14290	+	NM_001171990 NM_153706 BC036528 AK309152	79943	+	TSC_hg19_v1_chr5_-_56247951 BX537798 BX640907 CR749246 CR749805 BX647359 BX648294 BC041348 NM_152622	122755	-	TSC_hg19_v1_chr5_+_56469684 AK311625 NM_001203246 NM_022913	344525	+	AF042838|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##NM_001171990|C5orf35|133383|chromosome 5 open reading frame 35##NM_153706|C5orf35|133383|chromosome 5 open reading frame 35##BC036528|C5orf35|133383|chromosome 5 open reading frame 35##AK309152|C5orf35|133383|chromosome 5 open reading frame 35##BX537798|MIER3|166968|mesoderm induction early response 1, family member 3##BX640907|MIER3|166968|mesoderm induction early response 1, family member 3##CR749246|MIER3|166968|mesoderm induction early response 1, family member 3##CR749805|MIER3|166968|mesoderm induction early response 1, family member 3##BX647359|MIER3|166968|mesoderm induction early response 1, family member 3##BX648294|MIER3|166968|mesoderm induction early response 1, family member 3##BC041348|MIER3|166968|mesoderm induction early response 1, family member 3##NM_152622|MIER3|166968|mesoderm induction early response 1, family member 3##AK311625|GPBP1|65056|GC-rich promoter binding protein 1##NM_001203246|GPBP1|65056|GC-rich promoter binding protein 1##NM_022913|GPBP1|65056|GC-rich promoter binding protein 1	0.994615	0.0	
chr7	148659943	148660102	reg1005587.p1	6.887	+	TSC_hg19_v1_chr7_-_148581422 AK303637 NM_001203247 NM_001203248 NM_004456 NM_152998	-78596	-	TSC_hg19_v1_chr7_-_148581380 AK314291	-78641	-	TSC_hg19_v1_chr7_-_148581377 AK293239 AK303585	-78645	-	CU674214 DQ893573 DQ894347 TSC_hg19_v1_chr7_-_148725561 BC000425 BC001928 J05016 AK290971	65533	-	BC006344 BC011754 AK313299 TSC_hg19_v1_chr7_-_148725753	65721	-	TSC_hg19_v1_chr7_-_148725766 NM_004911	65750	-	AK303637|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203247|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203248|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_004456|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_152998|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK314291|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK293239|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK303585|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##DQ893573|PDIA4|9601|protein disulfide isomerase family A, member 4##DQ894347|PDIA4|9601|protein disulfide isomerase family A, member 4##BC000425|PDIA4|9601|protein disulfide isomerase family A, member 4##BC001928|PDIA4|9601|protein disulfide isomerase family A, member 4##AK290971|PDIA4|9601|protein disulfide isomerase family A, member 4##BC006344|PDIA4|9601|protein disulfide isomerase family A, member 4##BC011754|PDIA4|9601|protein disulfide isomerase family A, member 4##AK313299|PDIA4|9601|protein disulfide isomerase family A, member 4##NM_004911|PDIA4|9601|protein disulfide isomerase family A, member 4	0.68785	0.342249	denovo_WM_7:10:0.608	CTCF.p2:-48:0.342
chr10	26662154	26662302	reg1004113.p2	6.885	+	M74826 BC029517 M81882 TSC_hg19_v1_chr10_+_26505702 BC126327 BC126329 AB527954 HQ258311	-156563	+	NM_000818 NM_001134366	-156993	+	AK310494 TSC_hg19_v1_chr10_+_26223169 AF229172 AY101367 BC036079 BC045538	-439048	+	TSC_hg19_v1_chr10_+_26727269 NM_019043	65043	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	65089	+	TSC_hg19_v1_chr10_+_26727679 BC054516	65440	+	M74826|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC029517|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##M81882|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126327|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126329|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##HQ258311|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_000818|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_001134366|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##AK310494|MYO3A|53904|myosin IIIA##AF229172|MYO3A|53904|myosin IIIA##AY101367|MYO3A|53904|myosin IIIA##BC036079|MYO3A|53904|myosin IIIA##BC045538|MYO3A|53904|myosin IIIA##NM_019043|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	0.137153	0.360425	CTCF.p2:63:0.343
chr2	8685281	8685400	reg1004295.p1	6.885	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1627753	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1667477	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1678637	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	136863	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	292379	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	458481	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.997596	0.0	denovo_WM_7:39:0.738
chrX	40944670	40944778	reg1006459.p2	6.885	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-349595	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-349744	-	TSC_hg19_v1_chrX_-_40594795 AB006651 AF304448 BC098377 NM_004229	-349936	-	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	148	+	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	247926	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	248733	+	AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AB006651|MED14|9282|mediator complex subunit 14##AF304448|MED14|9282|mediator complex subunit 14##BC098377|MED14|9282|mediator complex subunit 14##NM_004229|MED14|9282|mediator complex subunit 14##NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	0.954351	0.0	denovo_WM_7:-34:0.556
chr12	44551316	44551451	reg1005633.p1	6.884	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-321477	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-351271	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-398604	+	D89629 AK315960 AK299277 NM_001145109	718008	-	BC020544 TSC_hg19_v1_chr12_-_45269991	718594	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	718722	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	0.0	0.0	
chr19	40650284	40650464	reg1000310.p3	6.884	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-53562	-	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-88248	-	NM_178544 AK122968 AK292528 BC045649	-147389	+	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	47272	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	73914	-	AK023327 AK301833 NM_024877	82205	-	AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2	0.998623	0.0	denovo_WM_7:68:0.913
chr7	50321891	50322045	reg1005594.p2	6.884	+	NM_001161834	-186287	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	-189144	-	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	-508698	+	TSC_hg19_v1_chr7_+_50344311 BC064594 AY377974 NM_001220765 NM_001220766 NM_001220767 NM_001220768 NM_001220769 NM_001220770 NM_001220771 NM_001220772 NM_001220773 NM_001220774 NM_001220775 NM_001220776 NM_006060 U40462	22385	+	TSC_hg19_v1_chr7_+_50348343 AK303586 AK308411 BC018349 AF180297	26351	+	BC051867 TSC_hg19_v1_chr7_-_50518046 AK308136 AK023142 AK027537 NM_001042762 NM_022116	196086	-	NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BC064594|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##AY377974|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220765|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220766|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220767|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220768|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220769|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220770|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220771|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220772|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220773|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220774|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220775|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220776|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_006060|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##U40462|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##AK303586|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##AK308411|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##BC018349|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##BC051867|FIGNL1|63979|fidgetin-like 1##AK308136|FIGNL1|63979|fidgetin-like 1##AK023142|FIGNL1|63979|fidgetin-like 1##AK027537|FIGNL1|63979|fidgetin-like 1##NM_001042762|FIGNL1|63979|fidgetin-like 1##NM_022116|FIGNL1|63979|fidgetin-like 1	1.968791	0.0	denovo_WM_7:64:0.835	denovo_WM_7:79:0.448	denovo_WM_7:80:0.464
chr9	36190448	36190628	reg1005519.p2	6.884	+	AK313763 NM_005893 AF333334 BC019251 DQ890826 DQ893980 DQ893982 EU176505 Z46967	-21092	+	TSC_hg19_v1_chr9_+_36136731 AK074488 BC017918 AK075091 AK298741 AK307243 CR749781 AY039756 NM_022343	-53806	+	TSC_hg19_v1_chr9_+_36036901 AK292653 NM_021111 AK315073 BC050306 BC032240 BC060806 BC137093 CU687432	-153591	+	NM_001076677 NM_001184760 NM_001184761 NM_001184762 NM_001833 NM_007096 TSC_hg19_v1_chr9_+_36190877	329	+	TSC_hg19_v1_chr9_+_36190919 AK291078	367	+	AK295692 TSC_hg19_v1_chr9_+_36190928 BC009201	393	+	AK313763|CCIN|881|calicin##NM_005893|CCIN|881|calicin##AF333334|CCIN|881|calicin##BC019251|CCIN|881|calicin##DQ890826|CCIN|881|calicin##DQ893980|CCIN|881|calicin##DQ893982|CCIN|881|calicin##EU176505|CCIN|881|calicin##Z46967|CCIN|881|calicin##AK074488|GLIPR2|152007|GLI pathogenesis-related 2##BC017918|GLIPR2|152007|GLI pathogenesis-related 2##AK075091|GLIPR2|152007|GLI pathogenesis-related 2##AK298741|GLIPR2|152007|GLI pathogenesis-related 2##AK307243|GLIPR2|152007|GLI pathogenesis-related 2##CR749781|GLIPR2|152007|GLI pathogenesis-related 2##AY039756|GLIPR2|152007|GLI pathogenesis-related 2##NM_022343|GLIPR2|152007|GLI pathogenesis-related 2##AK292653|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##NM_021111|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##AK315073|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC050306|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC032240|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC060806|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC137093|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##NM_001076677|CLTA|1211|clathrin, light chain A##NM_001184760|CLTA|1211|clathrin, light chain A##NM_001184761|CLTA|1211|clathrin, light chain A##NM_001184762|CLTA|1211|clathrin, light chain A##NM_001833|CLTA|1211|clathrin, light chain A##NM_007096|CLTA|1211|clathrin, light chain A##AK291078|CLTA|1211|clathrin, light chain A##AK295692|CLTA|1211|clathrin, light chain A##BC009201|CLTA|1211|clathrin, light chain A	0.954924	0.038198	denovo_WM_7:-64:0.909
chr15	59390778	59390937	reg1004351.p1	6.883	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-31779	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-110578	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-111000	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	6514	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	108195	+	AB290177 TSC_hg19_v1_chr15_-_59665055	274197	-	AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE	0.99773	0.0	denovo_WM_7:-2:0.527	denovo_WM_7:-3:0.470
chr17	28034131	28034261	reg1004702.p1	6.883	+	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-84345	-	AK096431 NM_032854	-85804	-	TSC_hg19_v1_chr17_+_27920483 NM_152345	-113694	+	TSC_hg19_v1_chr17_-_28088446 BC011636	54262	-	AK302745 AK303060 NM_001145053 AK299608	222700	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	222937	-	BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##NM_152345|ANKRD13B|124930|ankyrin repeat domain 13B##BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)	0.989627	0.0	denovo_WM_7:-17:0.924
chr17	38801635	38801771	reg1005665.p1	6.883	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-79985	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-143857	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-201884	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	2367	-	BC069196 TSC_hg19_v1_chr17_-_38804818	3093	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	19647	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	0.995836	0.0	denovo_WM_7:0:0.713	denovo_WM_7:2:0.228
chr5	139090469	139090626	reg1005544.p1	6.881	+	TSC_hg19_v1_chr5_+_139060403 DQ892589 DQ895807	-30155	+	AF151029 TSC_hg19_v1_chr5_+_139060229	-30335	+	BC002490 TSC_hg19_v1_chr5_+_139060088 AB463548 GQ379202 AK314420	-30463	+	TSC_hg19_v1_chr5_+_139175392 AL136559 NM_032289 BC038233	84859	+	BC103983 BC103984 BC114333 BC114334 TSC_hg19_v1_chr5_-_139422732	332181	-	U92987 TSC_hg19_v1_chr5_-_139422858 AB005060 AK124504 NM_001184935 NM_004883 NM_013981 NM_013982 NM_013983	332298	-	DQ892589|CXXC5|51523|CXXC finger protein 5##DQ895807|CXXC5|51523|CXXC finger protein 5##AF151029|CXXC5|51523|CXXC finger protein 5##BC002490|CXXC5|51523|CXXC finger protein 5##GQ379202|CXXC5|51523|CXXC finger protein 5##AK314420|CXXC5|51523|CXXC finger protein 5##AL136559|PSD2|84249|pleckstrin and Sec7 domain containing 2##NM_032289|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC038233|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC103983|NRG2|9542|neuregulin 2##BC103984|NRG2|9542|neuregulin 2##BC114333|NRG2|9542|neuregulin 2##BC114334|NRG2|9542|neuregulin 2##U92987|NRG2|9542|neuregulin 2##AB005060|NRG2|9542|neuregulin 2##AK124504|NRG2|9542|neuregulin 2##NM_001184935|NRG2|9542|neuregulin 2##NM_004883|NRG2|9542|neuregulin 2##NM_013981|NRG2|9542|neuregulin 2##NM_013982|NRG2|9542|neuregulin 2##NM_013983|NRG2|9542|neuregulin 2	0.996923	0.0	denovo_WM_7:-10:0.229	denovo_WM_7:-11:0.229	denovo_WM_7:-12:0.229	denovo_WM_7:-13:0.229
chr8	11151275	11151450	reg1005963.p1	6.881	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	-9007	+	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	-9350	+	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	-92497	-	AJ291677 NM_054028 BC131696	37148	+	BC038546 TSC_hg19_v1_chr8_-_11205010	53642	-	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	172867	-	AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A	0.999483	0.0	denovo_WM_7:-82:0.975
chr16	1346412	1346561	reg1005852.p1	6.880	+	NM_012217 BC069143	-40210	+	NM_003294 BC074974 BC074975 BC029356	-55795	+	BC065923 AK308208 BC029356 NM_024164 BC074974	-66308	-	NM_194260 NM_194261	12667	+	TSC_hg19_v1_chr16_+_1359631 NM_003345 NM_194259	13142	+	AK291118 TSC_hg19_v1_chr16_+_1359639	13156	+	NM_012217|TPSD1|23430|tryptase delta 1##BC069143|TPSD1|23430|tryptase delta 1##NM_003294|TPSAB1|7177|tryptase alpha/beta 1##BC074974|TPSAB1|7177|tryptase alpha/beta 1##BC074975|TPSAB1|7177|tryptase alpha/beta 1##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC065923|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##AK308208|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##NM_024164|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC074974|TPSAB1|7177|tryptase alpha/beta 1##NM_194260|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194261|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_003345|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194259|UBE2I|7329|ubiquitin-conjugating enzyme E2I##AK291118|UBE2I|7329|ubiquitin-conjugating enzyme E2I	0.996394	0.0	
chr16	23347375	23347555	reg1002264.p1	6.879	+	NM_000336 BC036352 X87159 AK313192	-33838	+	U48936 BC059391 NM_001039 TSC_hg19_v1_chr16_+_23194066	-153413	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	-186916	-	TSC_hg19_v1_chr16_-_23464487 BC000549 BC037563 NM_153603	117030	-	TSC_hg19_v1_chr16_-_23521748 AB384559 CU674130 DQ892534 DQ895745 BC050620 AF165531	174270	-	AF190863 AF323754 AF233522 TSC_hg19_v1_chr16_-_23521769	174297	-	NM_000336|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC036352|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##X87159|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##AK313192|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##U48936|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##BC059391|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##NM_001039|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31##BC000549|COG7|91949|component of oligomeric golgi complex 7##BC037563|COG7|91949|component of oligomeric golgi complex 7##NM_153603|COG7|91949|component of oligomeric golgi complex 7##DQ892534|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##DQ895745|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##BC050620|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF165531|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF190863|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF323754|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF233522|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2	0.0	0.0	
chr6	33643188	33643295	reg1004244.p1	6.879	+	TSC_hg19_v1_chr6_+_33589123 D26351 NM_002224 BC146646 U01062	-54047	+	TSC_hg19_v1_chr6_-_33548037 AK303422 AK293547 NM_001188	-95198	-	U23765 U16811 TSC_hg19_v1_chr6_-_33547998 X84213 BC004431 BC032789 BC110337 AK091807 AK292093	-95326	-	EF139858 AF086234 TSC_hg19_v1_chr6_-_33679476 AK311835	36222	-	TSC_hg19_v1_chr6_-_33679505 AY568085 BC006007 NM_032340	36272	-	AK056586 AK223572 AK289935 BC089389 NM_001142883 NM_054111	71480	-	D26351|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##NM_002224|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##BC146646|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##U01062|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##AK303422|BAK1|578|BCL2-antagonist/killer 1##AK293547|BAK1|578|BCL2-antagonist/killer 1##NM_001188|BAK1|578|BCL2-antagonist/killer 1##U23765|BAK1|578|BCL2-antagonist/killer 1##U16811|BAK1|578|BCL2-antagonist/killer 1##X84213|BAK1|578|BCL2-antagonist/killer 1##BC004431|BAK1|578|BCL2-antagonist/killer 1##BC032789|BAK1|578|BCL2-antagonist/killer 1##BC110337|BAK1|578|BCL2-antagonist/killer 1##AK091807|BAK1|578|BCL2-antagonist/killer 1##AK292093|BAK1|578|BCL2-antagonist/killer 1##AF086234|C6orf125|84300|chromosome 6 open reading frame 125##AK311835|C6orf125|84300|chromosome 6 open reading frame 125##AY568085|C6orf125|84300|chromosome 6 open reading frame 125##BC006007|C6orf125|84300|chromosome 6 open reading frame 125##NM_032340|C6orf125|84300|chromosome 6 open reading frame 125##AK056586|IP6K3|117283|inositol hexakisphosphate kinase 3##AK223572|IP6K3|117283|inositol hexakisphosphate kinase 3##AK289935|IP6K3|117283|inositol hexakisphosphate kinase 3##BC089389|IP6K3|117283|inositol hexakisphosphate kinase 3##NM_001142883|IP6K3|117283|inositol hexakisphosphate kinase 3##NM_054111|IP6K3|117283|inositol hexakisphosphate kinase 3	0.997361	0.0	denovo_WM_7:-31:0.816
chr1	116903506	116903618	reg1004786.p1	6.878	+	AK096035 NM_152367	-249187	+	TSC_hg19_v1_chr1_+_116519194 BC070033 AY358258 AY145501 CU693234 DQ892367 DQ895576	-384333	+	NM_018420 BC026358 TSC_hg19_v1_chr1_+_116519161	-384419	+	NM_000701 TSC_hg19_v1_chr1_+_116915824	12249	+	BC003077 TSC_hg19_v1_chr1_+_116915881 BC050359	12320	+	TSC_hg19_v1_chr1_+_116915952 AK314777	12386	+	AK096035|MAB21L3|126868|mab-21-like 3 (C. elegans)##NM_152367|MAB21L3|126868|mab-21-like 3 (C. elegans)##BC070033|SLC22A15|55356|solute carrier family 22, member 15##AY358258|SLC22A15|55356|solute carrier family 22, member 15##AY145501|SLC22A15|55356|solute carrier family 22, member 15##DQ892367|SLC22A15|55356|solute carrier family 22, member 15##DQ895576|SLC22A15|55356|solute carrier family 22, member 15##NM_018420|SLC22A15|55356|solute carrier family 22, member 15##BC026358|SLC22A15|55356|solute carrier family 22, member 15##NM_000701|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BC003077|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BC050359|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##AK314777|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide	0.998247	0.284707	denovo_WM_7:-14:0.965	CTCF.p2:24:0.285
chr1	156569791	156569916	reg1005829.p1	6.878	+	TSC_hg19_v1_chr1_+_156561594 AK316083	-8251	+	TSC_hg19_v1_chr1_+_156561567 AK294835 AK298222 BC056917 NM_144772 AJ315849 BC100931 BC100932 BC100933 BC100934	-8298	+	NM_001105669	-20335	+	AB528795 BC032436 TSC_hg19_v1_chr1_-_156571275 BC040147 AK125763 BC056904 AK000256 AK293026 AK301232 NM_015590 NM_182679	1404	-	AB049054 NM_021817 AK294131 AK310758 AK308805 AK090712 AK308980 AK293797 BC029864	19333	+	TSC_hg19_v1_chr1_+_156611723 AY358372 NM_021948 NM_198427	41876	+	AK294835|APOA1BP|128240|apolipoprotein A-I binding protein##AK298222|APOA1BP|128240|apolipoprotein A-I binding protein##BC056917|APOA1BP|128240|apolipoprotein A-I binding protein##NM_144772|APOA1BP|128240|apolipoprotein A-I binding protein##AJ315849|APOA1BP|128240|apolipoprotein A-I binding protein##BC100931|APOA1BP|128240|apolipoprotein A-I binding protein##BC100932|APOA1BP|128240|apolipoprotein A-I binding protein##BC100933|APOA1BP|128240|apolipoprotein A-I binding protein##BC100934|APOA1BP|128240|apolipoprotein A-I binding protein##NM_001105669|TTC24|164118|tetratricopeptide repeat domain 24##BC032436|GPATCH4|54865|G patch domain containing 4##BC040147|GPATCH4|54865|G patch domain containing 4##AK125763|GPATCH4|54865|G patch domain containing 4##BC056904|GPATCH4|54865|G patch domain containing 4##AK000256|GPATCH4|54865|G patch domain containing 4##AK293026|GPATCH4|54865|G patch domain containing 4##AK301232|GPATCH4|54865|G patch domain containing 4##NM_015590|GPATCH4|54865|G patch domain containing 4##NM_182679|GPATCH4|54865|G patch domain containing 4##AB049054|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##NM_021817|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK294131|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK310758|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK308805|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK090712|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK308980|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK293797|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##BC029864|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AY358372|BCAN|63827|brevican##NM_021948|BCAN|63827|brevican##NM_198427|BCAN|63827|brevican	0.993766	0.0	
chr11	62408285	62408352	reg1005274.p1	6.878	+	TSC_hg19_v1_chr11_-_62389612 AK075166 NM_012200	-18699	-	TSC_hg19_v1_chr11_-_62389457 AJ005865 CU675855 BC071961 BC007906 AB009598 BC019832 AK297970 AK310200 AK316228	-18901	-	NM_000327 AK313674 DQ426890	-28044	+	TSC_hg19_v1_chr11_-_62414075 D42041 AJ000332 BC065266	5751	-	TSC_hg19_v1_chr11_-_62414079 AK299819	5762	-	TSC_hg19_v1_chr11_-_62414083 AK295806 AK314370	5765	-	AK075166|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##NM_012200|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AJ005865|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##BC071961|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##BC007906|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AB009598|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##BC019832|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AK297970|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AK310200|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AK316228|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##NM_000327|ROM1|6094|retinal outer segment membrane protein 1##AK313674|ROM1|6094|retinal outer segment membrane protein 1##DQ426890|ROM1|6094|retinal outer segment membrane protein 1##D42041|GANAB|23193|glucosidase, alpha; neutral AB##AJ000332|GANAB|23193|glucosidase, alpha; neutral AB##BC065266|GANAB|23193|glucosidase, alpha; neutral AB##AK299819|GANAB|23193|glucosidase, alpha; neutral AB##AK295806|GANAB|23193|glucosidase, alpha; neutral AB##AK314370|GANAB|23193|glucosidase, alpha; neutral AB	0.998675	0.0	
chr19	11315797	11315923	reg1005949.p1	6.878	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-7398	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	-7602	-	AB528156 AY639929 CU687364 NM_015493	-10635	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	34436	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	57278	-	AF133424 NM_012466 BC029908	90973	+	AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16	0.0	0.0	
chr3	138534115	138534295	reg1005528.p1	6.878	+	AB384841 BC114432 NM_006219 S67334	-56021	-	AK001444 NM_018147	-206287	+	NM_001033030 NM_001033031 NM_001033032 TSC_hg19_v1_chr3_+_138327638 BC012478	-206589	+	BC062549 NM_023067	131776	-	AK125319 NM_001040061	131870	+	NM_001134659	190904	-	BC114432|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##NM_006219|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##S67334|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##AK001444|FAIM|55179|Fas apoptotic inhibitory molecule##NM_018147|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033030|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033031|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033032|FAIM|55179|Fas apoptotic inhibitory molecule##BC012478|FAIM|55179|Fas apoptotic inhibitory molecule##BC062549|FOXL2|668|forkhead box L2##NM_023067|FOXL2|668|forkhead box L2##AK125319|C3orf72|401089|chromosome 3 open reading frame 72##NM_001040061|C3orf72|401089|chromosome 3 open reading frame 72##NM_001134659|PRR23A|729627|proline rich 23A	1.981733	0.0	denovo_WM_7:70:0.551	denovo_WM_7:72:0.321
chr1	156743817	156743937	reg1004632.p1	6.877	+	TSC_hg19_v1_chr1_+_156737326 AK289872 BC010450 BC004913 X97124	-6530	+	NM_005973 TSC_hg19_v1_chr1_+_156737306	-6585	+	NM_001126051 AK096411 AK304468 NM_001126050	-21746	-	AK126428 NM_001007792	41628	+	AY763098 NM_001161443	42061	-	AB528908 EU832614 EU832686 AF097744 AK222737 AY763100 AF051325 AJ000553 AY763099 BC012107 AK313706 NM_001161441 NM_001161442 NM_001161444 NM_003975	42692	-	AK289872|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##BC010450|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##BC004913|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##X97124|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##NM_005973|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##NM_001126051|HDGF|3068|hepatoma-derived growth factor##AK096411|HDGF|3068|hepatoma-derived growth factor##AK304468|HDGF|3068|hepatoma-derived growth factor##NM_001126050|HDGF|3068|hepatoma-derived growth factor##AK126428|NTRK1|4914|neurotrophic tyrosine kinase, receptor, type 1##NM_001007792|NTRK1|4914|neurotrophic tyrosine kinase, receptor, type 1##AY763098|SH2D2A|9047|SH2 domain containing 2A##NM_001161443|SH2D2A|9047|SH2 domain containing 2A##EU832614|SH2D2A|9047|SH2 domain containing 2A##EU832686|SH2D2A|9047|SH2 domain containing 2A##AF097744|SH2D2A|9047|SH2 domain containing 2A##AK222737|SH2D2A|9047|SH2 domain containing 2A##AY763100|SH2D2A|9047|SH2 domain containing 2A##AF051325|SH2D2A|9047|SH2 domain containing 2A##AJ000553|SH2D2A|9047|SH2 domain containing 2A##AY763099|SH2D2A|9047|SH2 domain containing 2A##BC012107|SH2D2A|9047|SH2 domain containing 2A##AK313706|SH2D2A|9047|SH2 domain containing 2A##NM_001161441|SH2D2A|9047|SH2 domain containing 2A##NM_001161442|SH2D2A|9047|SH2 domain containing 2A##NM_001161444|SH2D2A|9047|SH2 domain containing 2A##NM_003975|SH2D2A|9047|SH2 domain containing 2A	2.475098	0.0	denovo_WM_7:57:0.438	denovo_WM_7:80:0.237	denovo_WM_7:81:0.203	denovo_WM_7:100:0.209	denovo_WM_7:101:0.243
chr12	46798115	46798249	reg1004961.p2	6.877	+	TSC_hg19_v1_chr12_-_46766619 NM_018976	-31579	-	TSC_hg19_v1_chr12_-_46766555 AK291644 BC040342 AK001700 AJ344099 AF298897	-31893	-	NM_001077484 NM_030674	-134975	-	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	421574	-	TSC_hg19_v1_chr12_+_47473404 BC072670	675215	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	675401	-	NM_018976|SLC38A2|54407|solute carrier family 38, member 2##AK291644|SLC38A2|54407|solute carrier family 38, member 2##BC040342|SLC38A2|54407|solute carrier family 38, member 2##AK001700|SLC38A2|54407|solute carrier family 38, member 2##AJ344099|SLC38A2|54407|solute carrier family 38, member 2##AF298897|SLC38A2|54407|solute carrier family 38, member 2##NM_001077484|SLC38A1|81539|solute carrier family 38, member 1##NM_030674|SLC38A1|81539|solute carrier family 38, member 1##AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2	0.0	0.0	
chr22	36877360	36877480	reg1000594.p1	6.877	+	TSC_hg19_v1_chr22_-_36784062 NM_002473	-93362	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-93412	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	-93441	-	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	259	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	25638	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	25697	-	NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle##BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2	0.0	0.0	
chr5	171794325	171794433	reg1003991.p1	6.877	+	NM_152277 TSC_hg19_v1_chr5_-_171710808	-83564	-	BC019910 TSC_hg19_v1_chr5_-_171710765 AK313274	-83675	-	NM_001171183	-173204	+	AB430862 DQ109556 BC038561 TSC_hg19_v1_chr5_-_171881387	86992	-	TSC_hg19_v1_chr5_-_171881518 AK128871 NM_001017995	87124	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	273874	+	NM_152277|UBTD2|92181|ubiquitin domain containing 2##BC019910|UBTD2|92181|ubiquitin domain containing 2##AK313274|UBTD2|92181|ubiquitin domain containing 2##NM_001171183|EFCAB9|285588|EF-hand calcium binding domain 9##AB430862|SH3PXD2B|285590|SH3 and PX domains 2B##DQ109556|SH3PXD2B|285590|SH3 and PX domains 2B##BC038561|SH3PXD2B|285590|SH3 and PX domains 2B##AK128871|SH3PXD2B|285590|SH3 and PX domains 2B##NM_001017995|SH3PXD2B|285590|SH3 and PX domains 2B##GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)	0.992478	0.0	denovo_WM_7:22:0.479	denovo_WM_7:23:0.479
chr17	44224204	44224297	reg1004962.p1	6.876	+	TSC_hg19_v1_chr17_+_44101553 AB073354	-122680	+	BC130319 BC130321 NM_001007532 AY179170	-147620	+	TSC_hg19_v1_chr17_+_44068829 AY526356	-155416	+	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	45904	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	46059	-	AK291259 NM_001193465	78477	-	AB073354|MAPT|4137|microtubule-associated protein tau##BC130319|STH|246744|saitohin##BC130321|STH|246744|saitohin##NM_001007532|STH|246744|saitohin##AY179170|STH|246744|saitohin##AY526356|MAPT|4137|microtubule-associated protein tau##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267	1.191133	0.0	denovo_WM_7:-29:0.203	denovo_WM_7:-44:0.273
chr17	8869394	8869538	reg1005432.p2	6.876	+	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	-485	-	AY725853 AF128881 NM_014308	-53650	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	-98482	-	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	55501	+	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	609665	-	TSC_hg19_v1_chr17_-_9479156 BC009713 AF062077 AF115323 NM_004853	609740	-	AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8##BC009713|STX8|9482|syntaxin 8##AF062077|STX8|9482|syntaxin 8##AF115323|STX8|9482|syntaxin 8##NM_004853|STX8|9482|syntaxin 8	0.988154	0.0	
chr19	44258029	44258095	reg1002715.p1	6.875	+	BC033853 NM_019612 BC066939	-37837	+	NM_001005376 NM_001005377 NM_002659	-83565	-	AF257789 CR456952 AB464026 DQ893017 DQ896262 M83246 TSC_hg19_v1_chr19_-_44174320 AK290774 AY029180 X51675 X74039 BC002788	-83759	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	958	-	TSC_hg19_v1_chr19_-_44259074 AK022948	1031	-	TSC_hg19_v1_chr19_-_44259117 NM_019108	1066	-	BC033853|IRGC|56269|immunity-related GTPase family, cinema##NM_019612|IRGC|56269|immunity-related GTPase family, cinema##BC066939|IRGC|56269|immunity-related GTPase family, cinema##NM_001005376|PLAUR|5329|plasminogen activator, urokinase receptor##NM_001005377|PLAUR|5329|plasminogen activator, urokinase receptor##NM_002659|PLAUR|5329|plasminogen activator, urokinase receptor##AF257789|PLAUR|5329|plasminogen activator, urokinase receptor##CR456952|PLAUR|5329|plasminogen activator, urokinase receptor##DQ893017|PLAUR|5329|plasminogen activator, urokinase receptor##DQ896262|PLAUR|5329|plasminogen activator, urokinase receptor##M83246|PLAUR|5329|plasminogen activator, urokinase receptor##AK290774|PLAUR|5329|plasminogen activator, urokinase receptor##AY029180|PLAUR|5329|plasminogen activator, urokinase receptor##X51675|PLAUR|5329|plasminogen activator, urokinase receptor##X74039|PLAUR|5329|plasminogen activator, urokinase receptor##BC002788|PLAUR|5329|plasminogen activator, urokinase receptor##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.998546	0.0	denovo_WM_7:14:0.405	denovo_WM_7:16:0.407
chr6	117935363	117935516	reg1003971.p1	6.875	+	TSC_hg19_v1_chr6_-_117923706 NM_001017408 NM_020399	-11725	-	TSC_hg19_v1_chr6_-_117923682 AF450008	-11753	-	TSC_hg19_v1_chr6_-_117923675 AK314486	-11766	-	TSC_hg19_v1_chr6_-_117996469 AK125564	60999	-	NM_138459 BC066910 TSC_hg19_v1_chr6_+_117996631	61185	+	TSC_hg19_v1_chr6_+_117996651 BC150654 BC150655 AK125119	61208	+	NM_001017408|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##NM_020399|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##AF450008|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##AK314486|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##NM_138459|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC066910|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC150654|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC150655|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##AK125119|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	0.858267	0.0	denovo_WM_7:-66:0.414	denovo_WM_7:-67:0.339
chr6	90007542	90007698	reg1004932.p1	6.872	+	AK313609 NM_002042	-80125	-	TSC_hg19_v1_chr6_+_89855838 BC035036 NM_001010853 AK302464 BC045583	-151739	+	AF449428 AB527997 CU692392 TSC_hg19_v1_chr6_-_89827756 AK314008 BC021715 NM_080743	-179918	-	BC130352 BC130354 M86868 NM_002043	17331	-	AB464335 DQ895144 EU176317 AF161502 U93243 TSC_hg19_v1_chr6_-_90062340	54696	-	AJ245898 TSC_hg19_v1_chr6_-_90062433 AF151834	54773	-	AK313609|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##NM_002042|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##BC035036|PM20D2|135293|peptidase M20 domain containing 2##NM_001010853|PM20D2|135293|peptidase M20 domain containing 2##AK302464|PM20D2|135293|peptidase M20 domain containing 2##BC045583|PM20D2|135293|peptidase M20 domain containing 2##AF449428|SRSF12|135295|serine/arginine-rich splicing factor 12##AK314008|SRSF12|135295|serine/arginine-rich splicing factor 12##BC021715|SRSF12|135295|serine/arginine-rich splicing factor 12##NM_080743|SRSF12|135295|serine/arginine-rich splicing factor 12##BC130352|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##BC130354|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##M86868|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##NM_002043|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##DQ895144|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##EU176317|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF161502|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##U93243|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AJ245898|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF151834|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U	0.0	0.0	
chr7	44897902	44898042	reg1005332.p2	6.872	+	TSC_hg19_v1_chr7_-_44887698 NM_012412 NM_138635 NM_201436 NM_201516 NM_201517	-10246	-	TSC_hg19_v1_chr7_-_44887667 AK023973	-10303	-	BC014885 AB209001 AK129989 BC000098 BC070169 TSC_hg19_v1_chr7_-_44887654	-10335	-	AB464680 TSC_hg19_v1_chr7_-_44924953 AY039216 NM_033224 BC101735 BC101737	26997	-	AB463131 TSC_hg19_v1_chr7_-_45018615 AK074050	120615	-	BC113544 BC117241 TSC_hg19_v1_chr7_-_45018675 AB290179 AL832302	120690	-	NM_012412|H2AFV|94239|H2A histone family, member V##NM_138635|H2AFV|94239|H2A histone family, member V##NM_201436|H2AFV|94239|H2A histone family, member V##NM_201516|H2AFV|94239|H2A histone family, member V##NM_201517|H2AFV|94239|H2A histone family, member V##AK023973|H2AFV|94239|H2A histone family, member V##BC014885|H2AFV|94239|H2A histone family, member V##AB209001|H2AFV|94239|H2A histone family, member V##AK129989|H2AFV|94239|H2A histone family, member V##BC000098|H2AFV|94239|H2A histone family, member V##BC070169|H2AFV|94239|H2A histone family, member V##AY039216|PURB|5814|purine-rich element binding protein B##NM_033224|PURB|5814|purine-rich element binding protein B##BC101735|PURB|5814|purine-rich element binding protein B##BC101737|PURB|5814|purine-rich element binding protein B##AK074050|MYO1G|64005|myosin IG##BC113544|MYO1G|64005|myosin IG##BC117241|MYO1G|64005|myosin IG##AB290179|MYO1G|64005|myosin IG##AL832302|MYO1G|64005|myosin IG	1.889996	0.0	denovo_WM_7:28:0.954	denovo_WM_7:68:0.406	denovo_WM_7:69:0.406
chr1	156265465	156265587	reg1004802.p1	6.870	+	TSC_hg19_v1_chr1_-_156265459 BC011575	-67	-	BC036340 AY358450 AK296157 AK075349 BC018757 NM_144580 TSC_hg19_v1_chr1_-_156265450	-102	-	NM_032323 AK315767 AK056816	-11440	+	NM_001004319	3901	-	BC014605 NM_144627	41578	+	DQ893014 DQ896259 X74801 AB529021 AK316387 TSC_hg19_v1_chr1_-_156308031 AY524046 AK293477 AK300765 BC006501	42482	-	BC011575|C1orf85|112770|chromosome 1 open reading frame 85##BC036340|C1orf85|112770|chromosome 1 open reading frame 85##AY358450|C1orf85|112770|chromosome 1 open reading frame 85##AK296157|C1orf85|112770|chromosome 1 open reading frame 85##AK075349|C1orf85|112770|chromosome 1 open reading frame 85##BC018757|C1orf85|112770|chromosome 1 open reading frame 85##NM_144580|C1orf85|112770|chromosome 1 open reading frame 85##NM_032323|TMEM79|84283|transmembrane protein 79##AK315767|TMEM79|84283|transmembrane protein 79##AK056816|TMEM79|84283|transmembrane protein 79##NM_001004319|VHLL|391104|von Hippel-Lindau tumor suppressor-like##BC014605|C1orf182|128229|chromosome 1 open reading frame 182##NM_144627|C1orf182|128229|chromosome 1 open reading frame 182##DQ893014|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##DQ896259|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##X74801|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK316387|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AY524046|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK293477|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##AK300765|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)##BC006501|CCT3|7203|chaperonin containing TCP1, subunit 3 (gamma)	0.0	0.0	
chr13	25916470	25916560	reg1005770.p2	6.870	+	NM_001008564 NM_014089 TSC_hg19_v1_chr13_+_25875768 AK123955 AK303409 AB007870 AK302946 BC001104 CU674550	-40728	+	TSC_hg19_v1_chr13_-_25861621 AL832017 AK093237 AX748005 NM_004685	-54860	-	AK314587 TSC_hg19_v1_chr13_-_25861584 BC040012	-54940	-	TSC_hg19_v1_chr13_+_25946121 AK127263 NM_016529	29637	+	TSC_hg19_v1_chr13_+_26042926 AK126031	126414	+	AK302980 TSC_hg19_v1_chr13_+_26042965	126450	+	NM_001008564|NUPL1|9818|nucleoporin like 1##NM_014089|NUPL1|9818|nucleoporin like 1##AK123955|NUPL1|9818|nucleoporin like 1##AK303409|NUPL1|9818|nucleoporin like 1##AB007870|NUPL1|9818|nucleoporin like 1##AK302946|NUPL1|9818|nucleoporin like 1##BC001104|NUPL1|9818|nucleoporin like 1##AL832017|MTMR6|9107|myotubularin related protein 6##AK093237|MTMR6|9107|myotubularin related protein 6##NM_004685|MTMR6|9107|myotubularin related protein 6##AK314587|MTMR6|9107|myotubularin related protein 6##BC040012|MTMR6|9107|myotubularin related protein 6##AK127263|ATP8A2|51761|ATPase, aminophospholipid transporter, class I, type 8A, member 2##NM_016529|ATP8A2|51761|ATPase, aminophospholipid transporter, class I, type 8A, member 2##AK126031|ATP8A2|51761|ATPase, aminophospholipid transporter, class I, type 8A, member 2##AK302980|ATP8A2|51761|ATPase, aminophospholipid transporter, class I, type 8A, member 2	0.0	0.0	
chr7	28370153	28370316	reg1005635.p2	6.870	+	L05913 NM_182899	-31295	+	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	-149828	-	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	-150033	-	TSC_hg19_v1_chr7_+_28448986 BC087859	78754	+	L05515 NM_182898	81909	+	L05911 NM_004904	104999	+	L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##BC087859|LOC401317|401317|uncharacterized LOC401317##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5	0.852152	0.0	denovo_WM_7:17:0.536	denovo_WM_7:18:0.239
chrX	13099870	13099992	reg1004654.p1	6.870	+	BX647580 AK313776 AF494345 BX648111 BX648919 NM_174901	-37113	-	TSC_hg19_v1_chrX_+_12994293 BC104464 BC104465 BT007090 X02493	-105588	+	BC107789 NM_021109 M17733 AK055976 AK057827 AK311747 BC016732 BC022857 BC062436 BC070248 BC070249 BC083509 BC092437 BC104666 BC061586 BC151215 BC139925 BC101790 BC101792 BC001631 BC064954 BC128103 BC141975 BC141976 BC128102	-106691	+	AB050195 TSC_hg19_v1_chrX_-_13338140 BC137186 BC137187	238207	-	AK302365 NM_001135995	238586	-	TSC_hg19_v1_chrX_-_13397507 D28370	297574	-	BX647580|FAM9C|171484|family with sequence similarity 9, member C##AK313776|FAM9C|171484|family with sequence similarity 9, member C##AF494345|FAM9C|171484|family with sequence similarity 9, member C##BX648111|FAM9C|171484|family with sequence similarity 9, member C##BX648919|FAM9C|171484|family with sequence similarity 9, member C##NM_174901|FAM9C|171484|family with sequence similarity 9, member C##BC104464|TMSB4X|7114|thymosin beta 4, X-linked##BC104465|TMSB4X|7114|thymosin beta 4, X-linked##BT007090|TMSB4X|7114|thymosin beta 4, X-linked##X02493|TMSB4X|7114|thymosin beta 4, X-linked##BC107789|TMSB4X|7114|thymosin beta 4, X-linked##NM_021109|TMSB4X|7114|thymosin beta 4, X-linked##M17733|TMSB4X|7114|thymosin beta 4, X-linked##AK055976|TMSB4X|7114|thymosin beta 4, X-linked##AK057827|TMSB4X|7114|thymosin beta 4, X-linked##AK311747|TMSB4X|7114|thymosin beta 4, X-linked##BC016732|TMSB4X|7114|thymosin beta 4, X-linked##BC022857|TMSB4X|7114|thymosin beta 4, X-linked##BC062436|TMSB4X|7114|thymosin beta 4, X-linked##BC070248|TMSB4X|7114|thymosin beta 4, X-linked##BC070249|TMSB4X|7114|thymosin beta 4, X-linked##BC083509|TMSB4X|7114|thymosin beta 4, X-linked##BC092437|TMSB4X|7114|thymosin beta 4, X-linked##BC104666|TMSB4X|7114|thymosin beta 4, X-linked##BC061586|TMSB4X|7114|thymosin beta 4, X-linked##BC151215|TMSB4X|7114|thymosin beta 4, X-linked##BC139925|TMSB4X|7114|thymosin beta 4, X-linked##BC101790|TMSB4X|7114|thymosin beta 4, X-linked##BC101792|TMSB4X|7114|thymosin beta 4, X-linked##BC001631|TMSB4X|7114|thymosin beta 4, X-linked##BC064954|TMSB4X|7114|thymosin beta 4, X-linked##BC128103|TMSB4X|7114|thymosin beta 4, X-linked##BC141975|TMSB4X|7114|thymosin beta 4, X-linked##BC141976|TMSB4X|7114|thymosin beta 4, X-linked##BC128102|TMSB4X|7114|thymosin beta 4, X-linked##AB050195|ATXN3L|92552|ataxin 3-like##BC137186|ATXN3L|92552|ataxin 3-like##BC137187|ATXN3L|92552|ataxin 3-like##AK302365|ATXN3L|92552|ataxin 3-like##NM_001135995|ATXN3L|92552|ataxin 3-like	0.0	0.0	
chrX	70416245	70416425	reg1000562.p2	6.870	+	TSC_hg19_v1_chrX_+_70364730 BC051715	-51595	+	TSC_hg19_v1_chrX_+_70364710 AF217411 AX773948 AX773949	-51622	+	NM_001166660 NM_018977 NM_181303 BX641059 TSC_hg19_v1_chrX_+_70364698 BC028738 AK299669	-51646	+	TSC_hg19_v1_chrX_+_70435056 NM_001097642	18719	+	TSC_hg19_v1_chrX_+_70435092 BC039198 X04325	18760	+	NM_000166 BC022426 AK313474 BC002805	26765	+	BC051715|NLGN3|54413|neuroligin 3##AF217411|NLGN3|54413|neuroligin 3##NM_001166660|NLGN3|54413|neuroligin 3##NM_018977|NLGN3|54413|neuroligin 3##NM_181303|NLGN3|54413|neuroligin 3##BX641059|NLGN3|54413|neuroligin 3##BC028738|NLGN3|54413|neuroligin 3##AK299669|NLGN3|54413|neuroligin 3##NM_001097642|GJB1|2705|gap junction protein, beta 1, 32kDa##BC039198|GJB1|2705|gap junction protein, beta 1, 32kDa##X04325|GJB1|2705|gap junction protein, beta 1, 32kDa##NM_000166|GJB1|2705|gap junction protein, beta 1, 32kDa##BC022426|GJB1|2705|gap junction protein, beta 1, 32kDa##AK313474|GJB1|2705|gap junction protein, beta 1, 32kDa##BC002805|GJB1|2705|gap junction protein, beta 1, 32kDa	0.0	0.0	
chr17	41665229	41665355	reg1006174.p1	6.869	+	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-41566	-	BC016623 AK290429 AK299019 AK312934 NM_001986	-42017	-	D12765 TSC_hg19_v1_chr17_-_41622738 DQ396626	-42552	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	73623	-	NM_001040002 AK291139	73983	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	170851	-	AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC016623|ETV4|2118|ets variant 4##AK290429|ETV4|2118|ets variant 4##AK299019|ETV4|2118|ets variant 4##AK312934|ETV4|2118|ets variant 4##NM_001986|ETV4|2118|ets variant 4##D12765|ETV4|2118|ets variant 4##DQ396626|ETV4|2118|ets variant 4##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin	0.998126	0.0	denovo_WM_7:-1:0.973
chr7	122087470	122087597	reg1003886.p1	6.869	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-142944	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-303244	-	TSC_hg19_v1_chr7_+_121513214 U88967	-574312	+	BC022038 AF447589 NM_139175 AK098524	251664	-	AK058116 AK098654 BC029264 NM_198085	255459	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	438965	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	1.686336	0.0	denovo_WM_7:71:0.544
chr17	4244306	4244449	reg1005510.p1	6.868	+	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-77226	-	TSC_hg19_v1_chr17_+_4046995 AK313088 AK172844 BC020263 CU690822 DQ891696 DQ894877	-197368	+	TSC_hg19_v1_chr17_+_4046490 NM_144611 BC051697	-197894	+	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	25334	-	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	25531	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	92865	+	AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK313088|CYB5D2|124936|cytochrome b5 domain containing 2##AK172844|CYB5D2|124936|cytochrome b5 domain containing 2##BC020263|CYB5D2|124936|cytochrome b5 domain containing 2##DQ891696|CYB5D2|124936|cytochrome b5 domain containing 2##DQ894877|CYB5D2|124936|cytochrome b5 domain containing 2##NM_144611|CYB5D2|124936|cytochrome b5 domain containing 2##BC051697|CYB5D2|124936|cytochrome b5 domain containing 2##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)	0.992177	0.0	
chr5	126022250	126022409	reg1005005.p1	6.868	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-54914	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-85697	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-91473	-	NM_005573 BC052951	89986	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	90502	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	90553	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.814949	0.0	denovo_WM_7:15:0.758
chr6	15301533	15301683	reg1003959.p1	6.866	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-52495	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-52707	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-55196	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	361569	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	361682	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	827694	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.892046	0.0	denovo_WM_7:56:0.841
chrX	1601136	1601297	reg1001501.p6	6.866	+	AK301844 NM_001173473	-28565	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-29415	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-90247	-	BC043610 GQ280263 NM_178129 AK126147	54822	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	109313	+	NM_004043 U11090	113131	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.992555	0.0	denovo_WM_7:-21:0.479	denovo_WM_7:-22:0.479
chr1	205595649	205595792	reg1005605.p2	6.865	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	-57507	+	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	-57593	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-121898	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	5186	-	NM_001973 NM_021795	6279	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	53848	-	BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3	0.0	0.0	
chr21	38353560	38353727	reg1006289.p2	6.865	+	TSC_hg19_v1_chr21_-_38353235 NM_001242785	-403	-	AJ001864 TSC_hg19_v1_chr21_-_38352974	-693	-	TSC_hg19_v1_chr21_-_38338991 AK307940 NM_001242784	-14784	-	TSC_hg19_v1_chr21_-_38362512 BC060787 D23672 NM_000411	9037	-	AB037158 NM_018962	25219	+	AB463579 TSC_hg19_v1_chr21_+_38379101	25442	+	NM_001242785|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##AJ001864|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##AK307940|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##NM_001242784|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##BC060787|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##D23672|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##NM_000411|HLCS|3141|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)##AB037158|DSCR6|53820|Down syndrome critical region gene 6##NM_018962|DSCR6|53820|Down syndrome critical region gene 6	0.998891	0.0	
chr7	148824548	148824728	reg1006143.p2	6.864	+	TSC_hg19_v1_chr7_+_148823499 AY049743 NM_020781	-1136	+	TSC_hg19_v1_chr7_-_148823395 NM_001001661	-1225	-	TSC_hg19_v1_chr7_-_148823339 AK125575 BC125189 AK056498 AY621067	-1301	-	TSC_hg19_v1_chr7_+_148844532 AK026380 NM_170686 BC043295 AK290499	19891	+	TSC_hg19_v1_chr7_+_148844772 AY049744 AB527270 CU692152	20121	+	D30612 TSC_hg19_v1_chr7_+_148892683 NM_003575 AK299280 BC073805 AK316282 AB587508 BC055287 BC041704	68051	+	AY049743|ZNF398|57541|zinc finger protein 398##NM_020781|ZNF398|57541|zinc finger protein 398##NM_001001661|ZNF425|155054|zinc finger protein 425##BC125189|ZNF425|155054|zinc finger protein 425##AK056498|ZNF425|155054|zinc finger protein 425##AY621067|ZNF425|155054|zinc finger protein 425##AK026380|ZNF398|57541|zinc finger protein 398##NM_170686|ZNF398|57541|zinc finger protein 398##BC043295|ZNF398|57541|zinc finger protein 398##AK290499|ZNF398|57541|zinc finger protein 398##AY049744|ZNF398|57541|zinc finger protein 398##D30612|ZNF282|8427|zinc finger protein 282##NM_003575|ZNF282|8427|zinc finger protein 282##AK299280|ZNF282|8427|zinc finger protein 282##BC073805|ZNF282|8427|zinc finger protein 282##AK316282|ZNF282|8427|zinc finger protein 282##BC055287|ZNF282|8427|zinc finger protein 282##BC041704|ZNF282|8427|zinc finger protein 282	0.994764	0.0	
chr10	69533129	69533278	reg1003956.p2	6.863	+	AF091606 AK313882 NM_013266	-77266	-	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	-107807	-	NM_178011 BX640611 AY358315 BC111492	-847388	+	CR457184 AF176013 BC017018 AK289537 AF176012 NM_021800 NM_201262	64649	-	TSC_hg19_v1_chr10_+_69644413 AF083106 NM_012238 AF235040	111204	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	111589	+	AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##CR457184|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176013|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##BC017018|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AK289537|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176012|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_021800|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_201262|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF083106|SIRT1|23411|sirtuin 1##NM_012238|SIRT1|23411|sirtuin 1##AF235040|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1	0.998517	0.0	
chr20	55964048	55964180	reg1004539.p2	6.863	+	NM_001190472	-29237	-	AK292247 AY349350 NM_001015885	-37513	+	TSC_hg19_v1_chr20_+_55926310 BC103754 AK309743 AK309069 U84720 BC106923 BC106924	-37792	+	TSC_hg19_v1_chr20_+_55966453 NM_017495 NM_183425 AF432218	2343	+	BC130486 AF336042 DQ778111 DQ778124 DQ778125 DQ778126 DQ778127 DQ778128 DQ778129 NM_080618 BC060763 AK313990 AK128070	136087	-	NM_002591 AK290802 TSC_hg19_v1_chr20_+_56136165 AK300072 BC023978 BX648510 L05144	172043	+	NM_001190472|MTRNR2L3|100462983|MT-RNR2-like 3##AK292247|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AY349350|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##NM_001015885|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC103754|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AK309743|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AK309069|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##U84720|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC106923|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC106924|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##NM_017495|RBM38|55544|RNA binding motif protein 38##NM_183425|RBM38|55544|RNA binding motif protein 38##AF432218|RBM38|55544|RNA binding motif protein 38##BC130486|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF336042|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778111|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778124|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778125|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778126|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778127|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778128|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778129|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_080618|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##BC060763|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK313990|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK128070|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_002591|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK290802|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK300072|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC023978|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BX648510|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##L05144|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)	0.999297	0.0	
chr4	109541631	109541804	reg1005515.p2	6.863	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	-451918	-	TSC_hg19_v1_chr4_+_109088684 BC020624	-453033	+	AK303272 NM_001166119	-453803	-	BC106009 NM_000995 D28420 TSC_hg19_v1_chr4_+_109541732 BC070208 NM_033625 AK055920 BC001773	49	+	AY762981 TSC_hg19_v1_chr4_+_109543670	1953	+	TSC_hg19_v1_chr4_+_109571754 NM_021227 BC054857 BC016321 AF161425 AF201937	30036	+	AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC106009|RPL34|6164|ribosomal protein L34##NM_000995|RPL34|6164|ribosomal protein L34##D28420|RPL34|6164|ribosomal protein L34##BC070208|RPL34|6164|ribosomal protein L34##NM_033625|RPL34|6164|ribosomal protein L34##AK055920|RPL34|6164|ribosomal protein L34##BC001773|RPL34|6164|ribosomal protein L34##AY762981|RPL34|6164|ribosomal protein L34##NM_021227|OSTC|58505|oligosaccharyltransferase complex subunit##BC054857|OSTC|58505|oligosaccharyltransferase complex subunit##BC016321|OSTC|58505|oligosaccharyltransferase complex subunit##AF161425|OSTC|58505|oligosaccharyltransferase complex subunit##AF201937|OSTC|58505|oligosaccharyltransferase complex subunit	0.0	0.0	
chr1	156252708	156252832	reg1005291.p1	6.862	+	AK122634 TSC_hg19_v1_chr1_+_156252725 BC005094	-39	+	TSC_hg19_v1_chr1_-_156252617 NM_015327	-150	-	TSC_hg19_v1_chr1_-_156252614 BC038296	-156	-	NM_032323 AK315767 AK056816	1316	+	BC036340 AY358450 AK296157 AK075349 BC018757 NM_144580 TSC_hg19_v1_chr1_-_156265450	12654	-	TSC_hg19_v1_chr1_-_156265459 BC011575	12689	-	AK122634|TMEM79|84283|transmembrane protein 79##BC005094|TMEM79|84283|transmembrane protein 79##NM_015327|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC038296|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_032323|TMEM79|84283|transmembrane protein 79##AK315767|TMEM79|84283|transmembrane protein 79##AK056816|TMEM79|84283|transmembrane protein 79##BC036340|C1orf85|112770|chromosome 1 open reading frame 85##AY358450|C1orf85|112770|chromosome 1 open reading frame 85##AK296157|C1orf85|112770|chromosome 1 open reading frame 85##AK075349|C1orf85|112770|chromosome 1 open reading frame 85##BC018757|C1orf85|112770|chromosome 1 open reading frame 85##NM_144580|C1orf85|112770|chromosome 1 open reading frame 85##BC011575|C1orf85|112770|chromosome 1 open reading frame 85	0.0	0.0	
chr12	95245507	95245665	reg1005189.p1	6.862	+	EU831778 EU831856 BC040535 NM_020698	-201322	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	-391854	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	-391944	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	151884	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	151930	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	221712	-	EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1	0.548039	0.0	denovo_WM_7:58:0.203
chr14	77587977	77588133	reg1004747.p1	6.862	+	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	-23410	+	AK124327 TSC_hg19_v1_chr14_-_77542533	-45522	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-92995	-	BC117676 TSC_hg19_v1_chr14_-_77608072	19960	-	AK294840 TSC_hg19_v1_chr14_-_77608135 AK095612 NM_174976	20080	-	TSC_hg19_v1_chr14_+_77648082 NM_020431	60037	+	NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK294840|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK095612|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_174976|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_020431|TMEM63C|57156|transmembrane protein 63C	0.024456	0.0	
chr19	3877033	3877135	reg1005955.p1	6.862	+	AL365406 TSC_hg19_v1_chr19_-_3869037 AK295037 NM_001145640 NM_015174 BC034005	-8045	-	AK055395 NM_002378	-75275	-	TSC_hg19_v1_chr19_-_3786423 BC000114 BC003109 NM_139354 NM_139355	-90673	-	NM_033064 TSC_hg19_v1_chr19_+_3880650	3551	+	TSC_hg19_v1_chr19_+_3880670 AB058775	3581	+	BC026217 TSC_hg19_v1_chr19_+_3880682 AK027889 AK092309 AK299522 AX747472	3596	+	AL365406|ZFR2|23217|zinc finger RNA binding protein 2##AK295037|ZFR2|23217|zinc finger RNA binding protein 2##NM_001145640|ZFR2|23217|zinc finger RNA binding protein 2##NM_015174|ZFR2|23217|zinc finger RNA binding protein 2##BC034005|ZFR2|23217|zinc finger RNA binding protein 2##AK055395|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_002378|MATK|4145|megakaryocyte-associated tyrosine kinase##BC000114|MATK|4145|megakaryocyte-associated tyrosine kinase##BC003109|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_139354|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_139355|MATK|4145|megakaryocyte-associated tyrosine kinase##NM_033064|ATCAY|85300|ataxia, cerebellar, Cayman type##AB058775|ATCAY|85300|ataxia, cerebellar, Cayman type##BC026217|ATCAY|85300|ataxia, cerebellar, Cayman type##AK027889|ATCAY|85300|ataxia, cerebellar, Cayman type##AK092309|ATCAY|85300|ataxia, cerebellar, Cayman type##AK299522|ATCAY|85300|ataxia, cerebellar, Cayman type	0.026763	0.0	
chr10	45456495	45456637	reg1003985.p2	6.861	+	TSC_hg19_v1_chr10_+_45455249 AY216713 AY216714 AY216715 AY216716 NM_032023 BC032593 AF260335 AK311531	-1334	+	AK056518 TSC_hg19_v1_chr10_-_45455156	-1419	-	BX538120 BC127789 BC127790 NM_001123376 AB235418	-49848	+	BC011402 AB025244 TSC_hg19_v1_chr10_-_45474258 AK002191 AK098476 AL136653 AB022718 AK300839 AK312496 NM_007021	17703	-	NM_006963 AK291508 AK312278 BC053687 BC010642	39761	+	TSC_hg19_v1_chr10_-_45496265 AK311351 HQ258049 BC062568 BC130369 BC130395 AK055129 NM_001039380	39798	-	AY216713|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216714|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216715|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216716|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##NM_032023|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##BC032593|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AF260335|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AK311531|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AK056518|TMEM72-AS1|220980|TMEM72 antisense RNA 1 (non-protein coding)##BX538120|TMEM72|643236|transmembrane protein 72##BC127789|TMEM72|643236|transmembrane protein 72##BC127790|TMEM72|643236|transmembrane protein 72##NM_001123376|TMEM72|643236|transmembrane protein 72##AB235418|TMEM72|643236|transmembrane protein 72##BC011402|C10orf10|11067|chromosome 10 open reading frame 10##AB025244|C10orf10|11067|chromosome 10 open reading frame 10##AK002191|C10orf10|11067|chromosome 10 open reading frame 10##AK098476|C10orf10|11067|chromosome 10 open reading frame 10##AL136653|C10orf10|11067|chromosome 10 open reading frame 10##AB022718|C10orf10|11067|chromosome 10 open reading frame 10##AK300839|C10orf10|11067|chromosome 10 open reading frame 10##AK312496|C10orf10|11067|chromosome 10 open reading frame 10##NM_007021|C10orf10|11067|chromosome 10 open reading frame 10##NM_006963|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK291508|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK312278|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC053687|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC010642|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK311351|C10orf25|220979|chromosome 10 open reading frame 25##HQ258049|C10orf25|220979|chromosome 10 open reading frame 25##BC062568|C10orf25|220979|chromosome 10 open reading frame 25##BC130369|C10orf25|220979|chromosome 10 open reading frame 25##BC130395|C10orf25|220979|chromosome 10 open reading frame 25##AK055129|C10orf25|220979|chromosome 10 open reading frame 25##NM_001039380|C10orf25|220979|chromosome 10 open reading frame 25	0.0	0.0	
chrY	1551136	1551297	reg1001502.p6	6.861	+	AK301844 NM_001173473	-28565	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-29415	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-90247	-	BC043610 GQ280263 NM_178129 AK126147	54822	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	109313	+	NM_004043 U11090	113131	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.992555	0.0	denovo_WM_7:-20:0.479	denovo_WM_7:-21:0.479
chr3	36942238	36942317	reg1000570.p1	6.860	+	NM_033403	-160926	-	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	-520225	+	BC017805 NM_198399 BC066651 BC036548	-1219818	+	TSC_hg19_v1_chr3_-_36986546 NM_014831	44293	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	92294	-	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	92424	-	NM_033403|DCLK3|85443|doublecortin-like kinase 3##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1	1.389704	0.0	denovo_WM_7:73:0.456
chr10	70804431	70804569	reg1005577.p2	6.859	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-55965	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-88568	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-143383	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	43336	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	43384	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	79391	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	0.998929	0.0	denovo_WM_7:27:0.794
chr1	181065656	181065836	reg1005798.p1	6.859	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-7881	+	NM_016545	-8109	+	CU680340 TSC_hg19_v1_chr1_+_181003143 AF031469 AF010447	-62596	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	386954	+	BC137223 BC137224 AK128654 NM_001009992	965051	-	TSC_hg19_v1_chr1_-_182354649 AK301600	1288936	-	BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##AF031469|MR1|3140|major histocompatibility complex, class I-related##AF010447|MR1|3140|major histocompatibility complex, class I-related##NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase	1.992546	0.0	denovo_WM_7:21:0.237	denovo_WM_7:22:0.203	denovo_WM_7:41:0.210	denovo_WM_7:42:0.243
chr18	57529524	57529653	reg1004958.p1	6.859	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-164938	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-164997	-	TSC_hg19_v1_chr18_-_57026487 DQ891254 DQ894440 U09716 AK223208 AK225108 AK312869 BC008401 BC032330 BC017858 X71661 AK301244 NM_005570	-503102	-	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	37641	+	AK314130 NM_005912	510412	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1628186	+	NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##DQ891254|LMAN1|3998|lectin, mannose-binding, 1##DQ894440|LMAN1|3998|lectin, mannose-binding, 1##U09716|LMAN1|3998|lectin, mannose-binding, 1##AK223208|LMAN1|3998|lectin, mannose-binding, 1##AK225108|LMAN1|3998|lectin, mannose-binding, 1##AK312869|LMAN1|3998|lectin, mannose-binding, 1##BC008401|LMAN1|3998|lectin, mannose-binding, 1##BC032330|LMAN1|3998|lectin, mannose-binding, 1##BC017858|LMAN1|3998|lectin, mannose-binding, 1##X71661|LMAN1|3998|lectin, mannose-binding, 1##AK301244|LMAN1|3998|lectin, mannose-binding, 1##NM_005570|LMAN1|3998|lectin, mannose-binding, 1##NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2	1.620925	0.0	denovo_WM_7:9:0.808	denovo_WM_7:-11:0.635
chr10	85440344	85440458	reg1003601.p1	6.858	+	DQ857894 NM_001165973	-1802959	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	-1805319	+	AK123978 NM_001145719	-3139827	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	458856	+	BC033760 BC051760 TSC_hg19_v1_chr10_-_85931861	491391	-	NM_207373 TSC_hg19_v1_chr10_+_85933558 AY358751	493158	+	DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein##BC033760|LOC642934|642934|uncharacterized LOC642934##BC051760|LOC642934|642934|uncharacterized LOC642934##NM_207373|C10orf99|387695|chromosome 10 open reading frame 99##AY358751|C10orf99|387695|chromosome 10 open reading frame 99	0.923865	0.0	denovo_WM_7:-7:0.724
chr18	43518399	43518560	reg1004376.p1	6.858	+	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-112855	+	NM_001146037	-211562	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	-214322	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	28799	-	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	133729	-	TSC_hg19_v1_chr18_-_43668143 AK129804	149698	-	AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.999062	0.0	denovo_WM_7:-41:0.310	denovo_WM_7:-42:0.310	denovo_WM_7:-43:0.310
chr3	60490762	60490898	reg1005035.p2	6.858	+	BC050317 TSC_hg19_v1_chr3_-_59035759	-1455070	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-1455089	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	-1455122	-	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	746260	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	1056381	+	BC047734 TSC_hg19_v1_chr3_+_61547294	1056456	+	BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	0.628308	0.0	denovo_WM_7:17:0.306
chr6	119214845	119215025	reg1005228.p1	6.858	+	BC110835 BC064835 NM_001178035	-183702	-	BC048977 BC052778 NM_001042475 NM_206921 BC036553	-241899	-	NM_002667 M63603 AK311799 BC005269	-345470	+	NM_014034 AK025738 AL050261 BC010878 AB028628 AF279306 CU679835 CR457347	473	+	DQ892465 DQ895678 NM_017696	37959	-	TSC_hg19_v1_chr6_-_119256163 AK122665	41238	-	BC110835|CEP85L|387119|centrosomal protein 85kDa-like##BC064835|CEP85L|387119|centrosomal protein 85kDa-like##NM_001178035|CEP85L|387119|centrosomal protein 85kDa-like##BC048977|CEP85L|387119|centrosomal protein 85kDa-like##BC052778|CEP85L|387119|centrosomal protein 85kDa-like##NM_001042475|CEP85L|387119|centrosomal protein 85kDa-like##NM_206921|CEP85L|387119|centrosomal protein 85kDa-like##BC036553|CEP85L|387119|centrosomal protein 85kDa-like##NM_002667|PLN|5350|phospholamban##M63603|PLN|5350|phospholamban##AK311799|PLN|5350|phospholamban##BC005269|PLN|5350|phospholamban##NM_014034|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AK025738|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AL050261|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##BC010878|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AB028628|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AF279306|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##CR457347|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##DQ892465|MCM9|254394|minichromosome maintenance complex component 9##DQ895678|MCM9|254394|minichromosome maintenance complex component 9##NM_017696|MCM9|254394|minichromosome maintenance complex component 9##AK122665|MCM9|254394|minichromosome maintenance complex component 9	1.142549	0.0	denovo_WM_7:84:0.427
chr14	73492376	73492543	reg1006106.p2	6.857	+	AK098542 AF311602 NM_178441	-38802	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	-99324	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	-131651	-	AB046809 TSC_hg19_v1_chr14_-_73493815 AJ310569 AK027399 BC014902 BC053520 NM_021260	1372	-	TSC_hg19_v1_chr14_+_73525218 BC062440 NM_021239	32750	+	TSC_hg19_v1_chr14_+_73525252 AK026107 AL832314 BC033664 BC083496 BC111066	32789	+	AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AB046809|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AJ310569|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AK027399|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC014902|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC053520|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_021260|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC062440|RBM25|58517|RNA binding motif protein 25##NM_021239|RBM25|58517|RNA binding motif protein 25##AK026107|RBM25|58517|RNA binding motif protein 25##AL832314|RBM25|58517|RNA binding motif protein 25##BC033664|RBM25|58517|RNA binding motif protein 25##BC083496|RBM25|58517|RNA binding motif protein 25##BC111066|RBM25|58517|RNA binding motif protein 25	0.997232	0.0	
chr1	46710869	46711049	reg1000885.p2	6.856	+	CR749700 AK056186 NM_001243766	-24990	-	AK057892 NM_001013615 TSC_hg19_v1_chr1_+_46669021 BC034422 AB463505	-41908	+	TSC_hg19_v1_chr1_-_46664112 BC001471 NM_017739	-46834	-	TSC_hg19_v1_chr1_+_46713362 NM_001142548 NM_003579	2409	+	TSC_hg19_v1_chr1_+_46713388 AK292611	2427	+	TSC_hg19_v1_chr1_+_46713434 AK297204	2480	+	CR749700|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK056186|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_001243766|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK057892|C1orf190|541468|chromosome 1 open reading frame 190##NM_001013615|C1orf190|541468|chromosome 1 open reading frame 190##BC034422|C1orf190|541468|chromosome 1 open reading frame 190##BC001471|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_017739|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_001142548|RAD54L|8438|RAD54-like (S. cerevisiae)##NM_003579|RAD54L|8438|RAD54-like (S. cerevisiae)##AK292611|RAD54L|8438|RAD54-like (S. cerevisiae)##AK297204|RAD54L|8438|RAD54-like (S. cerevisiae)	0.0	0.0	
chr17	29134431	29134611	reg1005642.p1	6.856	+	TSC_hg19_v1_chr17_+_29058664 BC047718	-75833	+	BC096718 BC098126 BC098273 NM_015594	-247938	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-330088	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	17154	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	17242	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	24464	+	BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5	1.991438	0.0	denovo_WM_7:22:0.442	denovo_WM_7:23:0.295	denovo_WM_7:38:0.323	denovo_WM_7:39:0.470
chr10	13916207	13916327	reg1004350.p1	6.855	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-166578	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-287280	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-287324	+	TSC_hg19_v1_chr10_-_14050453 AK001072	134225	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	456583	-	TSC_hg19_v1_chr10_-_14646259 BC064407	730050	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.99575	0.0	
chr12	1582780	1582898	reg1006050.p1	6.855	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-482387	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-524013	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-565757	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	120512	-	AY009399 NM_030775	143382	+	BC001749 NM_032642	155572	+	NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B	0.998449	0.0	
chr7	6725613	6725685	reg1006891.p1	6.854	+	NM_017560	-70123	+	TSC_hg19_v1_chr7_+_6629662 BC001076 BC005121 AK056149 NM_024067	-95863	+	TSC_hg19_v1_chr7_+_6617111 AK223532 NM_001134387 NM_001134388 NM_001134389 NM_018106 AK001341 AK308971 AL136674 BC001239 AY359090	-108531	+	TSC_hg19_v1_chr7_-_6746579 BC051892 BC154414 AB021643 NM_006956 NM_016265 AK293925	20931	-	AK092111 TSC_hg19_v1_chr7_+_6746715	21060	+	TSC_hg19_v1_chr7_+_6769414 AK296451	43766	+	NM_017560|ZNF853|54753|zinc finger protein 853##BC001076|C7orf26|79034|chromosome 7 open reading frame 26##BC005121|C7orf26|79034|chromosome 7 open reading frame 26##AK056149|C7orf26|79034|chromosome 7 open reading frame 26##NM_024067|C7orf26|79034|chromosome 7 open reading frame 26##AK223532|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_001134387|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_001134388|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_001134389|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_018106|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AK001341|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AK308971|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AL136674|ZDHHC4|55146|zinc finger, DHHC-type containing 4##BC001239|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AY359090|ZDHHC4|55146|zinc finger, DHHC-type containing 4##BC051892|ZNF12|7559|zinc finger protein 12##BC154414|ZNF12|7559|zinc finger protein 12##AB021643|ZNF12|7559|zinc finger protein 12##NM_006956|ZNF12|7559|zinc finger protein 12##NM_016265|ZNF12|7559|zinc finger protein 12##AK293925|ZNF12|7559|zinc finger protein 12	0.844445	0.0	
chrX	53794168	53794303	reg1004907.p1	6.852	+	TSC_hg19_v1_chrX_-_53713665 BC018750 BC038184 DQ097177 NM_031407 AK056671	-80558	-	TSC_hg19_v1_chrX_-_53629608 AB071605	-164621	-	CR456723 TSC_hg19_v1_chrX_-_53461318 AF069134 BC008708 BC000372 BC000829 U73514 AF035555 U96132 NM_001037811 NM_004493	-332929	-	BC042108 NM_001184898	275374	-	BC053861 TSC_hg19_v1_chrX_-_54070368	276105	-	TSC_hg19_v1_chrX_-_54070423 AK304272 CR933612	276196	-	BC018750|HUWE1|10075|HECT, UBA and WWE domain containing 1##BC038184|HUWE1|10075|HECT, UBA and WWE domain containing 1##DQ097177|HUWE1|10075|HECT, UBA and WWE domain containing 1##NM_031407|HUWE1|10075|HECT, UBA and WWE domain containing 1##AK056671|HUWE1|10075|HECT, UBA and WWE domain containing 1##AB071605|HUWE1|10075|HECT, UBA and WWE domain containing 1##CR456723|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##AF069134|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC008708|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC000372|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC000829|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##U73514|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##AF035555|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##U96132|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##NM_001037811|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##NM_004493|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC042108|PHF8|23133|PHD finger protein 8##NM_001184898|PHF8|23133|PHD finger protein 8##BC053861|PHF8|23133|PHD finger protein 8##AK304272|PHF8|23133|PHD finger protein 8##CR933612|PHF8|23133|PHD finger protein 8	0.997871	0.0	
chr16	25027231	25027411	reg1006255.p2	6.851	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-629	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-709	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-58429	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	50968	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	95740	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	95876	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	0.988323	0.0	
chr18	42289756	42289918	reg1004743.p1	6.850	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-28969	+	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	-29723	+	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	-1432408	-	NM_001242692 AK292422	503115	+	AF349446 NM_007163	904928	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	1014267	+	AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	0.995904	0.0	
chrX	131874682	131874811	reg1004652.p2	6.850	+	BC042090 NM_001170704 TSC_hg19_v1_chrX_-_131624064	-250713	-	AF491305 EU446986 BC074775 BC074776 AB077698 AB077699 AF467070 AJ427918 AJ427919 AY072692 NM_018388 NM_133486	-301069	-	AY372211 AK002178 NM_001170701 NM_001170702 AK300248 NM_001170703	-327161	-	TSC_hg19_v1_chrX_-_132091486 BC037325 AK295118 AL049679 AB067777 AB067776 AK295041	216655	-	AK075402 TSC_hg19_v1_chrX_-_132092281 BC094718	217510	-	AK056706 NM_001077188 NM_147175	220676	-	BC042090|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170704|MBNL3|55796|muscleblind-like 3 (Drosophila)##AF491305|MBNL3|55796|muscleblind-like 3 (Drosophila)##EU446986|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC074775|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC074776|MBNL3|55796|muscleblind-like 3 (Drosophila)##AB077698|MBNL3|55796|muscleblind-like 3 (Drosophila)##AB077699|MBNL3|55796|muscleblind-like 3 (Drosophila)##AF467070|MBNL3|55796|muscleblind-like 3 (Drosophila)##AJ427918|MBNL3|55796|muscleblind-like 3 (Drosophila)##AJ427919|MBNL3|55796|muscleblind-like 3 (Drosophila)##AY072692|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_018388|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_133486|MBNL3|55796|muscleblind-like 3 (Drosophila)##AY372211|MBNL3|55796|muscleblind-like 3 (Drosophila)##AK002178|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170701|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170702|MBNL3|55796|muscleblind-like 3 (Drosophila)##AK300248|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170703|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC037325|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK295118|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AL049679|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AB067777|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AB067776|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK295041|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK075402|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##BC094718|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK056706|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##NM_001077188|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##NM_147175|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2	0.142012	0.193112	
chr18	5982434	5982566	reg1005389.p1	6.849	+	NM_001080209	-90398	-	TSC_hg19_v1_chr18_-_5630663 BC008377	-351853	-	AF069072 AB023204 NM_012307 TSC_hg19_v1_chr18_-_5543997 AK128531	-438512	-	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	432415	-	NM_001243517	528914	+	NM_001010000 BX648684 AK308259 AK302026	851965	+	NM_001080209|TMEM200C|645369|transmembrane protein 200C##BC008377|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AF069072|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AB023204|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##NM_012307|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AK128531|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28	0.0	0.0	
chr13	111719580	111719750	reg1006112.p1	6.848	+	AK000100 NM_017664 TSC_hg19_v1_chr13_-_111567417	-152249	-	TSC_hg19_v1_chr13_-_111567375 BC001727 AK096083 BC039715	-152300	-	CU674848 CU691752 TSC_hg19_v1_chr13_-_111567293	-152378	-	TSC_hg19_v1_chr13_+_111767658 BC060776 NM_001113511 NM_001113512 NM_145735 BC033905 AL834228 CU687414 CU689800 EU832819 GQ129214	48064	+	AK300157 TSC_hg19_v1_chr13_+_111806035	86371	+	TSC_hg19_v1_chr13_+_111806041 AB177849 NM_003899	86386	+	AK000100|ANKRD10|55608|ankyrin repeat domain 10##NM_017664|ANKRD10|55608|ankyrin repeat domain 10##BC001727|ANKRD10|55608|ankyrin repeat domain 10##AK096083|ANKRD10|55608|ankyrin repeat domain 10##BC039715|ANKRD10|55608|ankyrin repeat domain 10##BC060776|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_001113511|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_001113512|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_145735|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##BC033905|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AL834228|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##EU832819|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##GQ129214|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AK300157|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AB177849|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_003899|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7	1.993468	0.0	
chr15	21980040	21980152	reg1005498.p1	6.847	+	NM_207355 BC066981	-908118	-	NM_001145004	-1232983	-	TSC_hg19_v1_chr15_-_20711449 BC070076 BC033888 BC094757	-1268659	-	NM_207355 BC066981	103042	-	BC136985 NM_001004719	388381	+	BC136597 BC136598 NM_001005241 DQ786223	402349	+	NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##NM_001145004|GOLGA6L6|727832|golgin A6 family-like 6##BC033888|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##BC094757|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##BC136597|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136598|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##NM_001005241|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4	1.839066	0.0	denovo_WM_7:-41:0.938	denovo_WM_7:-72:0.632
chr16	29620665	29620824	reg1006208.p1	6.847	+	TSC_hg19_v1_chr16_-_29606667 AK316536	-14071	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-14399	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-149518	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	4298	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	53588	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	53821	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin	1.161136	0.0	
chr17	40307350	40307450	reg1000435.p2	6.847	+	TSC_hg19_v1_chr17_-_40307015 BC114439 BC106039 NM_001252039 NM_004583 NM_201434	-362	-	TSC_hg19_v1_chr17_-_40307008 AK310234	-402	-	TSC_hg19_v1_chr17_-_40306986 U18420	-439	-	TSC_hg19_v1_chr17_-_40333301 AB022698 NM_012285	25875	-	AB463761 AF041240 NM_001524	30026	-	AK298933 TSC_hg19_v1_chr17_-_40346487 BC022784 AK122777 AK123075 AK307058 BC011056 AK075277 NM_001142622 NM_001142623 NM_032484	39088	-	BC114439|RAB5C|5878|RAB5C, member RAS oncogene family##BC106039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_001252039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_004583|RAB5C|5878|RAB5C, member RAS oncogene family##NM_201434|RAB5C|5878|RAB5C, member RAS oncogene family##AK310234|RAB5C|5878|RAB5C, member RAS oncogene family##U18420|RAB5C|5878|RAB5C, member RAS oncogene family##AB022698|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##NM_012285|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##AF041240|HCRT|3060|hypocretin (orexin) neuropeptide precursor##NM_001524|HCRT|3060|hypocretin (orexin) neuropeptide precursor##AK298933|GHDC|84514|GH3 domain containing##BC022784|GHDC|84514|GH3 domain containing##AK122777|GHDC|84514|GH3 domain containing##AK123075|GHDC|84514|GH3 domain containing##AK307058|GHDC|84514|GH3 domain containing##BC011056|GHDC|84514|GH3 domain containing##AK075277|GHDC|84514|GH3 domain containing##NM_001142622|GHDC|84514|GH3 domain containing##NM_001142623|GHDC|84514|GH3 domain containing##NM_032484|GHDC|84514|GH3 domain containing	0.249205	0.0	denovo_WM_7:33:0.249
chr5	7971133	7971275	reg1006684.p1	6.847	+	TSC_hg19_v1_chr5_+_7869306 BC062577	-101894	+	AF121214 BC109216 BC109217 NM_002454 NM_024010 TSC_hg19_v1_chr5_+_7869273 AK308442 AK311663 AF025794 BC054816 BC035977	-101945	+	TSC_hg19_v1_chr5_-_7869116 AK026927 AF161354 NM_024091	-102072	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	1574990	-	BC095521 NM_019599	1659258	-	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	2278780	-	BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF121214|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109216|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109217|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_002454|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_024010|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK308442|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK311663|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF025794|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC054816|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC035977|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK026927|FASTKD3|79072|FAST kinase domains 3##AF161354|FASTKD3|79072|FAST kinase domains 3##NM_024091|FASTKD3|79072|FAST kinase domains 3##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##BC063406|FAM173B|134145|family with sequence similarity 173, member B	1.714959	0.0	denovo_WM_7:-42:0.442	denovo_WM_7:82:0.719
chr8	120964322	120964479	reg1005437.p1	6.845	+	NM_022783 TSC_hg19_v1_chr8_+_120885965 AK315175 AK225168 AK297822 AL136678 AK225675 BC024746 AK022490 BC012040 AM392576 AM393333 AB527130 AK023916	-78396	+	DQ891267 DQ894455 TSC_hg19_v1_chr8_-_120868155 AK315356 AK074355 BC001531 AY358866 AK054585 BC001316 NM_024094	-96286	-	BC035673 AF026445 BC047732 TSC_hg19_v1_chr8_-_120845082 BC064830 NM_003184 AK316592	-119323	-	TSC_hg19_v1_chr8_+_121137341 NM_021110 Y11709 AK293080 AK307716 AK311498	172955	+	CU692406 DQ893117 DQ893487 DQ896395 AK307322 TSC_hg19_v1_chr8_-_121457370 AB049640 AF112214 BC009190	492955	-	TSC_hg19_v1_chr8_-_121457391 AK311924	492993	-	NM_022783|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK315175|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225168|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK297822|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AL136678|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225675|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC024746|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK022490|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC012040|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM392576|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM393333|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK023916|DEPTOR|64798|DEP domain containing MTOR-interacting protein##DQ891267|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ894455|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK315356|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK074355|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001531|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AY358866|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK054585|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001316|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##NM_024094|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC035673|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##AF026445|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##BC047732|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##BC064830|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##NM_003184|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##AK316592|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##NM_021110|COL14A1|7373|collagen, type XIV, alpha 1##Y11709|COL14A1|7373|collagen, type XIV, alpha 1##AK293080|COL14A1|7373|collagen, type XIV, alpha 1##AK307716|COL14A1|7373|collagen, type XIV, alpha 1##AK311498|COL14A1|7373|collagen, type XIV, alpha 1##DQ893117|MRPL13|28998|mitochondrial ribosomal protein L13##DQ893487|MRPL13|28998|mitochondrial ribosomal protein L13##DQ896395|MRPL13|28998|mitochondrial ribosomal protein L13##AK307322|MRPL13|28998|mitochondrial ribosomal protein L13##AB049640|MRPL13|28998|mitochondrial ribosomal protein L13##AF112214|MRPL13|28998|mitochondrial ribosomal protein L13##BC009190|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13	0.990188	0.0	denovo_WM_7:14:0.902
chr8	23082621	23082801	reg1001026.p2	6.845	+	TSC_hg19_v1_chr8_-_23082664 NM_003844	-45	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	-99	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-61216	-	AK097202 NM_152272 BC042050	18447	+	TSC_hg19_v1_chr8_+_23104147 AK315664 AK021776	21424	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	21531	+	NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7##AK315664|CHMP7|91782|charged multivesicular body protein 7##AK021776|CHMP7|91782|charged multivesicular body protein 7##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7	0.0	0.0	
chr10	58422938	58423060	reg1005224.p2	6.844	+	AK093808 BC020979 AK293416 TSC_hg19_v1_chr10_-_58121021 AK298148 BC110399 NM_001005413 NM_007057 NM_032997	-301973	-	TSC_hg19_v1_chr10_-_58121017 AF067656 AK225509	-301985	-	NM_001190478 TSC_hg19_v1_chr10_+_57358800	-1064225	+	TSC_hg19_v1_chr10_-_60027655 BC016612 BC065709 NM_152230	1604662	-	BC005962 TSC_hg19_v1_chr10_+_60028929 NM_018464 BC059168 AF220049 BC008474 BC007043 AY960578 AK312017	1605947	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	1671837	+	AK093808|ZWINT|11130|ZW10 interactor##BC020979|ZWINT|11130|ZW10 interactor##AK293416|ZWINT|11130|ZW10 interactor##AK298148|ZWINT|11130|ZW10 interactor##BC110399|ZWINT|11130|ZW10 interactor##NM_001005413|ZWINT|11130|ZW10 interactor##NM_007057|ZWINT|11130|ZW10 interactor##NM_032997|ZWINT|11130|ZW10 interactor##AF067656|ZWINT|11130|ZW10 interactor##AK225509|ZWINT|11130|ZW10 interactor##NM_001190478|MTRNR2L5|100463289|MT-RNR2-like 5##BC016612|IPMK|253430|inositol polyphosphate multikinase##BC065709|IPMK|253430|inositol polyphosphate multikinase##NM_152230|IPMK|253430|inositol polyphosphate multikinase##BC005962|CISD1|55847|CDGSH iron sulfur domain 1##NM_018464|CISD1|55847|CDGSH iron sulfur domain 1##BC059168|CISD1|55847|CDGSH iron sulfur domain 1##AF220049|CISD1|55847|CDGSH iron sulfur domain 1##BC008474|CISD1|55847|CDGSH iron sulfur domain 1##BC007043|CISD1|55847|CDGSH iron sulfur domain 1##AY960578|CISD1|55847|CDGSH iron sulfur domain 1##AK312017|CISD1|55847|CDGSH iron sulfur domain 1##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1	0.999406	0.0	
chr9	6757008	6757118	reg1004771.p1	6.844	+	AK310439 NM_001146696	-36201	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-111436	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-343658	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	604	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	976	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1042652	-	AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123	0.055423	0.0	
chr10	48181440	48181585	reg1006007.p1	6.843	+	NM_018232	-287490	+	NM_001630 BC008813 BC073755 AK096715 AK313626 X16662 BC029890 AK300191 AK223149 AK307182 CU679125 CU687256	-434497	+	BC171820 BC171845 BC171847 NM_001190810	-967887	-	BC171820 BC171845 BC171847 NM_001190810	34211	+	BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556 BC146955 BC146968	66152	+	AK298761 NM_001040084 BC073755 AK096715 Z36830 AK296976 BC004376 NM_001098845 X16662 BC029890 AK300158 AK223149 AK296573 AK300139 M81844 AB590156 CU687256 DQ893430 DQ896775	73813	+	NM_018232|FAM21B|55747|family with sequence similarity 21, member B##NM_001630|ANXA8L2|244|annexin A8-like 2##BC008813|ANXA8L2|244|annexin A8-like 2##BC073755|ANXA8|653145|annexin A8##AK313626|ANXA8L2|244|annexin A8-like 2##X16662|ANXA8L2|244|annexin A8-like 2##AK300191|ANXA8L2|244|annexin A8-like 2##AK223149|ANXA8L2|244|annexin A8-like 2##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##AK298761|ANXA8|653145|annexin A8##NM_001040084|ANXA8|653145|annexin A8##BC073755|ANXA8|653145|annexin A8##Z36830|ANXA8|653145|annexin A8##BC004376|ANXA8|653145|annexin A8##NM_001098845|ANXA8L1|728113|annexin A8-like 1##X16662|ANXA8L2|244|annexin A8-like 2##AK300158|ANXA8|653145|annexin A8##AK223149|ANXA8L2|244|annexin A8-like 2##AK296573|ANXA8|653145|annexin A8##AK300139|ANXA8|653145|annexin A8##M81844|ANXA8|653145|annexin A8##DQ893430|ANXA8L2|244|annexin A8-like 2##DQ896775|ANXA8|653145|annexin A8	0.484486	0.0	denovo_WM_7:66:0.302
chr3	23994228	23994409	reg1005940.p1	6.843	+	TSC_hg19_v1_chr3_+_23987516 AK301925 NM_001145425	-6756	+	TSC_hg19_v1_chr3_+_23986776 NM_005126 D16815 AK313464 BC045613 BC070035	-7503	+	NM_001253380 AY347528 L25899 AB529129 BT019672 CU677095 CU687134	-35046	+	GQ456948 GQ456949 GQ869479 GQ919288 AY286469 AY286468 AY286465 AY286471 TSC_hg19_v1_chr3_-_24536294 AY286467 AY286466 AK096628 M26747 NM_000461 NM_001128176 NM_001128177 NM_001252634 X04707	541926	-	AY286470 TSC_hg19_v1_chr3_-_24536493	542159	-	TSC_hg19_v1_chr3_+_25469751 AF157483 NM_016152	1475441	+	AK301925|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001145425|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_005126|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##D16815|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##AK313464|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC045613|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC070035|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001253380|RPL15|6138|ribosomal protein L15##AY347528|RPL15|6138|ribosomal protein L15##L25899|RPL15|6138|ribosomal protein L15##BT019672|RPL15|6138|ribosomal protein L15##GQ456948|THRB|7068|thyroid hormone receptor, beta##GQ456949|THRB|7068|thyroid hormone receptor, beta##GQ869479|THRB|7068|thyroid hormone receptor, beta##GQ919288|THRB|7068|thyroid hormone receptor, beta##AY286469|THRB|7068|thyroid hormone receptor, beta##AY286468|THRB|7068|thyroid hormone receptor, beta##AY286465|THRB|7068|thyroid hormone receptor, beta##AY286471|THRB|7068|thyroid hormone receptor, beta##AY286467|THRB|7068|thyroid hormone receptor, beta##AY286466|THRB|7068|thyroid hormone receptor, beta##AK096628|THRB|7068|thyroid hormone receptor, beta##M26747|THRB|7068|thyroid hormone receptor, beta##NM_000461|THRB|7068|thyroid hormone receptor, beta##NM_001128176|THRB|7068|thyroid hormone receptor, beta##NM_001128177|THRB|7068|thyroid hormone receptor, beta##NM_001252634|THRB|7068|thyroid hormone receptor, beta##X04707|THRB|7068|thyroid hormone receptor, beta##AY286470|THRB|7068|thyroid hormone receptor, beta##AF157483|RARB|5915|retinoic acid receptor, beta##NM_016152|RARB|5915|retinoic acid receptor, beta	0.99858	0.0	denovo_WM_7:-93:0.494	denovo_WM_7:-94:0.494
chr9	40792151	40792289	reg1006447.p1	6.843	+	AK057375 AK292150 NM_033160	-134	-	NM_001083124	-91930	+	AK302569 NM_001040065 NM_001085452 BC146855	-907259	+	BC040528 NM_001113541 NM_015667 NM_001242613	535159	-	BC040528 NM_001113541 NM_015667	708458	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	1162694	-	AK057375|ZNF658|26149|zinc finger protein 658##AK292150|ZNF658|26149|zinc finger protein 658##NM_033160|ZNF658|26149|zinc finger protein 658##NM_001083124|FAM75A3|727830|family with sequence similarity 75, member A3##AK302569|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001040065|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001085452|FAM75A1|647060|family with sequence similarity 75, member A1##BC146855|FAM75A2|642265|family with sequence similarity 75, member A2##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881	0.0	0.0	
chr20	52510760	52510851	reg1003941.p3	6.842	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-300006	-	AF041259 NM_006526	-311170	-	AK302570 NM_001193421	-708984	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	176257	-	AK315220 NM_003657	176498	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	279715	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.948177	0.0	denovo_WM_7:-32:0.626
chr22	40988356	40988536	reg1005569.p1	6.842	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-129016	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-221791	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-221805	+	TSC_hg19_v1_chr22_-_41032681 AF368061	44207	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	44258	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	86775	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	1.995456	0.0	denovo_WM_7:22:0.842	denovo_WM_7:53:0.409	denovo_WM_7:56:0.272
chr5	36720851	36721009	reg1005558.p2	6.842	+	NM_001166695 U03504 AB529121 AY954110 TSC_hg19_v1_chr5_+_36608562	-112434	+	TSC_hg19_v1_chr5_+_36606718 AK312304 BC037310 AK057823 AK293886 BC022285 BC054475 AK295032 AK295754 D26443 L19158	-114202	+	NM_001166696 NM_004172	-114474	+	TSC_hg19_v1_chr5_-_36876762 AK000901	155833	-	TSC_hg19_v1_chr5_+_36876875 NM_015384 NM_133433 AJ627032 AJ640137	155934	+	TSC_hg19_v1_chr5_+_36876945 BC146821 BX640644 BC131490 AK290347 BX538178 BX538177	156140	+	NM_001166695|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##U03504|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AY954110|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK312304|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##BC037310|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK057823|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK293886|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##BC022285|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##BC054475|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK295032|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK295754|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##D26443|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##L19158|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##NM_001166696|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##NM_004172|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK000901|LOC646719|646719|uncharacterized LOC646719##NM_015384|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_133433|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ627032|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ640137|NIPBL|25836|Nipped-B homolog (Drosophila)##BC146821|NIPBL|25836|Nipped-B homolog (Drosophila)##BX640644|NIPBL|25836|Nipped-B homolog (Drosophila)##BC131490|NIPBL|25836|Nipped-B homolog (Drosophila)##AK290347|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538178|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538177|NIPBL|25836|Nipped-B homolog (Drosophila)	0.993828	0.0	denovo_WM_7:0:0.248	denovo_WM_7:0:0.248	denovo_WM_7:-1:0.248	denovo_WM_7:-2:0.248
chr19	1037912	1038041	reg1004261.p1	6.841	+	AK024835 AK057960 AK293171 TSC_hg19_v1_chr19_+_1026627 BC141818 BC141833 D83735 AK222924 AK300788 D86059 BC148264 CR541810 CR541831 AY927510 AY927514	-11314	+	TSC_hg19_v1_chr19_+_1026625 AK297774	-11352	+	TSC_hg19_v1_chr19_+_1026609 AK126391	-11366	+	TSC_hg19_v1_chr19_+_1040105 NM_019112	2116	+	AK310127 TSC_hg19_v1_chr19_+_1040114 AK301108 AK310909	2158	+	TSC_hg19_v1_chr19_+_1067170 BC065223 NM_012292	29167	+	AK024835|CNN2|1265|calponin 2##AK057960|CNN2|1265|calponin 2##AK293171|CNN2|1265|calponin 2##BC141818|CNN2|1265|calponin 2##BC141833|CNN2|1265|calponin 2##D83735|CNN2|1265|calponin 2##AK222924|CNN2|1265|calponin 2##AK300788|CNN2|1265|calponin 2##D86059|CNN2|1265|calponin 2##BC148264|CNN2|1265|calponin 2##CR541810|CNN2|1265|calponin 2##CR541831|CNN2|1265|calponin 2##AY927514|CNN2|1265|calponin 2##AK297774|CNN2|1265|calponin 2##AK126391|CNN2|1265|calponin 2##NM_019112|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310127|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK301108|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310909|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##BC065223|HMHA1|23526|histocompatibility (minor) HA-1##NM_012292|HMHA1|23526|histocompatibility (minor) HA-1	0.998917	0.0	denovo_WM_7:0:0.483
chr4	102005793	102005933	reg1004188.p1	6.840	+	CU676062 AB590686 AB034695 AK222741 AK304568 AK291831 BC017781 AF205940 AK026875 AK313504 NM_001159694 NM_016242	-566703	-	AL832277 BC013592 TSC_hg19_v1_chr4_-_101111626 AK312926 AK094236 NM_145244	-894233	-	TSC_hg19_v1_chr4_+_100871641 AK123926	-1134217	+	AB385587 AB451338 AB451487 AM393486 AM393713 CU693026 AY904364 BC025714 TSC_hg19_v1_chr4_-_102268080 L14778	262163	-	TSC_hg19_v1_chr4_-_102268343 AL353950	262509	-	AK290532 TSC_hg19_v1_chr4_-_102268547	262652	-	AB034695|EMCN|51705|endomucin##AK222741|EMCN|51705|endomucin##AK304568|EMCN|51705|endomucin##AK291831|EMCN|51705|endomucin##BC017781|EMCN|51705|endomucin##AF205940|EMCN|51705|endomucin##AK026875|EMCN|51705|endomucin##AK313504|EMCN|51705|endomucin##NM_001159694|EMCN|51705|endomucin##NM_016242|EMCN|51705|endomucin##AL832277|DDIT4L|115265|DNA-damage-inducible transcript 4-like##BC013592|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK312926|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK094236|DDIT4L|115265|DNA-damage-inducible transcript 4-like##NM_145244|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK123926|LOC256880|256880|uncharacterized LOC256880##AB451338|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AB451487|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393486|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393713|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AY904364|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##BC025714|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##L14778|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AL353950|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AK290532|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme	0.982412	0.0	denovo_WM_7:-54:0.704
chr21	43715449	43715629	reg1004741.p1	6.839	+	TSC_hg19_v1_chr21_+_43710190 AF038175	-5326	+	AK298491 AF323664 NM_207174	-75571	+	TSC_hg19_v1_chr21_+_43639249 AK292152 BC029158 NM_004915 NM_016818 AF323663 EU832827 GQ129336 X91249 DQ891343 EU176570	-76246	+	L08044 DQ891963 DQ895153 L15203 BC017859 TSC_hg19_v1_chr21_-_43735520	19952	-	NM_003226 AF432265	20193	-	X51698 BC032820 NM_005423	55599	-	AF038175|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AK298491|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323664|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207174|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AK292152|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##BC029158|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_004915|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_016818|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323663|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##EU832827|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##GQ129336|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##X91249|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##DQ891343|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##EU176570|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##L08044|TFF3|7033|trefoil factor 3 (intestinal)##DQ891963|TFF3|7033|trefoil factor 3 (intestinal)##DQ895153|TFF3|7033|trefoil factor 3 (intestinal)##L15203|TFF3|7033|trefoil factor 3 (intestinal)##BC017859|TFF3|7033|trefoil factor 3 (intestinal)##NM_003226|TFF3|7033|trefoil factor 3 (intestinal)##AF432265|TFF3|7033|trefoil factor 3 (intestinal)##X51698|TFF2|7032|trefoil factor 2##BC032820|TFF2|7032|trefoil factor 2##NM_005423|TFF2|7032|trefoil factor 2	2.972799	0.0	denovo_WM_7:-57:0.540	denovo_WM_7:-58:0.381	denovo_WM_7:-72:0.486	denovo_WM_7:-73:0.438	denovo_WM_7:-87:0.432	denovo_WM_7:-88:0.498
chr4	3108384	3108503	reg1003742.p1	6.839	+	L12392 TSC_hg19_v1_chr4_+_3076416 AB016794 NM_002111	-32116	+	TSC_hg19_v1_chr4_+_2965297 AK292390 AK223581 NM_001004056 NM_001004057 NM_182982 BC110825 BC027597 BC039732 BC117320 U33054 U33055 U33056 AK293569 X97879 X97880 X97881 X98118 HQ258463 X75897	-142908	+	TSC_hg19_v1_chr4_-_2965155 AK292939	-143249	-	AK126094 NM_001042690	142323	+	TSC_hg19_v1_chr4_+_3294763 AK310999 BC028154	186317	+	AF030111 NM_002926 NM_198229	207430	+	L12392|HTT|3064|huntingtin##AB016794|HTT|3064|huntingtin##NM_002111|HTT|3064|huntingtin##AK292390|GRK4|2868|G protein-coupled receptor kinase 4##AK223581|GRK4|2868|G protein-coupled receptor kinase 4##NM_001004056|GRK4|2868|G protein-coupled receptor kinase 4##NM_001004057|GRK4|2868|G protein-coupled receptor kinase 4##NM_182982|GRK4|2868|G protein-coupled receptor kinase 4##BC027597|GRK4|2868|G protein-coupled receptor kinase 4##BC117320|GRK4|2868|G protein-coupled receptor kinase 4##U33054|GRK4|2868|G protein-coupled receptor kinase 4##U33055|GRK4|2868|G protein-coupled receptor kinase 4##U33056|GRK4|2868|G protein-coupled receptor kinase 4##X97879|GRK4|2868|G protein-coupled receptor kinase 4##X97880|GRK4|2868|G protein-coupled receptor kinase 4##X97881|GRK4|2868|G protein-coupled receptor kinase 4##X98118|GRK4|2868|G protein-coupled receptor kinase 4##HQ258463|GRK4|2868|G protein-coupled receptor kinase 4##X75897|GRK4|2868|G protein-coupled receptor kinase 4##AK292939|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##AK126094|C4orf44|345222|chromosome 4 open reading frame 44##NM_001042690|C4orf44|345222|chromosome 4 open reading frame 44##AK310999|RGS12|6002|regulator of G-protein signaling 12##BC028154|RGS12|6002|regulator of G-protein signaling 12##AF030111|RGS12|6002|regulator of G-protein signaling 12##NM_002926|RGS12|6002|regulator of G-protein signaling 12##NM_198229|RGS12|6002|regulator of G-protein signaling 12	0.0	0.989385	CTCF.p2:66:0.989
chr14	62025742	62025919	reg1005025.p1	6.838	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-237303	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-277308	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-277636	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	136360	+	FJ790247 NM_001243084	138509	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	203289	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	2.985641	0.0	denovo_WM_7:82:0.953	denovo_WM_7:97:0.971
chr12	112566838	112566958	reg1004147.p1	6.837	+	TSC_hg19_v1_chr12_+_112563363 AK122620 AK291331 AK295474 AB007447	-3507	+	TSC_hg19_v1_chr12_+_112563341 AK309916 AK312601 NM_001143906 NM_006700	-3576	+	TSC_hg19_v1_chr12_-_112546588 BC065481 AB054990 AK309772 AK307494 BC095484 BX647450 BC034357 BX641140 AK292485 BC113585 BC113587 NM_024953	-20300	-	TSC_hg19_v1_chr12_-_112630525 AF174498	63630	-	TSC_hg19_v1_chr12_-_112819755 NM_001109662	252927	-	TSC_hg19_v1_chr12_-_112847411 BC022444 X69391 BC004138 BC104824 BC104826 AK308680 NM_000970 NM_001024662	280507	-	AK122620|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK291331|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK295474|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AB007447|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK309916|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK312601|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_001143906|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_006700|TRAFD1|10906|TRAF-type zinc finger domain containing 1##BC065481|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AB054990|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK309772|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK307494|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC095484|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX647450|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC034357|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX641140|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK292485|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113585|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113587|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##NM_024953|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AF174498|C12orf51|283450|chromosome 12 open reading frame 51##NM_001109662|C12orf51|283450|chromosome 12 open reading frame 51##BC022444|RPL6|6128|ribosomal protein L6##X69391|RPL6|6128|ribosomal protein L6##BC004138|RPL6|6128|ribosomal protein L6##BC104824|RPL6|6128|ribosomal protein L6##BC104826|RPL6|6128|ribosomal protein L6##NM_000970|RPL6|6128|ribosomal protein L6##NM_001024662|RPL6|6128|ribosomal protein L6	1.097767	0.0	
chr15	23076258	23076438	reg1000415.p2	6.837	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-41932	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-41981	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-42014	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	10026	-	BC025678 NM_001142275	10494	-	TSC_hg19_v1_chr15_-_23115247 BC044583	38900	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	0.45533	0.0	denovo_WM_7:72:0.271
chr20	49104054	49104164	reg1001690.p1	6.837	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-296479	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-296728	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-296916	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	22767	+	TSC_hg19_v1_chr20_+_49126916 AK316563	22804	+	AK299830 TSC_hg19_v1_chr20_+_49126919	22810	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	0.122794	0.0	
chr2	204762336	204762516	reg1006404.p2	6.837	+	BC070162 AF414120 NM_001037631 NM_005214 AK313732 BC069566 BC074893 BC074842 AB590653 AF486806 AY209009 AY792514 AY999702 DQ785106 L15006	-29839	+	BC093698 BC112085 TSC_hg19_v1_chr2_+_204571384 AK292986 AB590652 AF222341 AF222342 AF222343 AJ295273	-191027	+	NM_001243077 NM_001243078 NM_006139 AJ517504 AK313313 J02988 TSC_hg19_v1_chr2_+_204571361 AK303421	-191146	+	AK314985 AJ277832 NM_012092 BC028006 BC028210 AB023135 AF218312 CU688368 CU688430	39068	+	TSC_hg19_v1_chr2_+_205410465 AB053321 NM_057177 NM_152526 NM_205863	648064	+	TSC_hg19_v1_chr2_+_205410560 AX765687 AX765741 AK056157	648168	+	BC070162|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AF414120|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##NM_001037631|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##NM_005214|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AK313732|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC069566|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC074893|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC074842|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AF486806|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY209009|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY792514|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY999702|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##DQ785106|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##L15006|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC093698|CD28|940|CD28 molecule##BC112085|CD28|940|CD28 molecule##AK292986|CD28|940|CD28 molecule##AF222341|CD28|940|CD28 molecule##AF222342|CD28|940|CD28 molecule##AF222343|CD28|940|CD28 molecule##AJ295273|CD28|940|CD28 molecule##NM_001243077|CD28|940|CD28 molecule##NM_001243078|CD28|940|CD28 molecule##NM_006139|CD28|940|CD28 molecule##AJ517504|CD28|940|CD28 molecule##AK313313|CD28|940|CD28 molecule##J02988|CD28|940|CD28 molecule##AK303421|CD28|940|CD28 molecule##AK314985|ICOS|29851|inducible T-cell co-stimulator##AJ277832|ICOS|29851|inducible T-cell co-stimulator##NM_012092|ICOS|29851|inducible T-cell co-stimulator##BC028006|ICOS|29851|inducible T-cell co-stimulator##BC028210|ICOS|29851|inducible T-cell co-stimulator##AB023135|ICOS|29851|inducible T-cell co-stimulator##AB053321|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##NM_057177|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##NM_152526|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##NM_205863|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AK056157|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)	1.141353	0.0	denovo_WM_7:-28:0.798
chr14	55034322	55034447	reg1005217.p1	6.836	+	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	-40	+	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	-57773	+	TSC_hg19_v1_chr14_-_54955728 AB001106 BX647679 NM_004124	-78629	-	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	252	+	TSC_hg19_v1_chr14_+_55168831 AB028976	134505	+	NM_001161577 BC021726	187143	+	NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##AB001106|GMFB|2764|glia maturation factor, beta##BX647679|GMFB|2764|glia maturation factor, beta##NM_004124|GMFB|2764|glia maturation factor, beta##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_001161577|SAMD4A|23034|sterile alpha motif domain containing 4A##BC021726|SAMD4A|23034|sterile alpha motif domain containing 4A	0.896038	0.0	denovo_WM_7:-3:0.896
chr16	57323653	57323783	reg1005453.p2	6.836	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-5139	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-5207	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-44585	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	68992	+	AK222692 TSC_hg19_v1_chr16_+_57406382	82667	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	82721	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	1.003279	0.0	denovo_WM_7:24:0.377	denovo_WM_7:25:0.394
chr1	32785749	32785895	reg1004526.p1	6.835	+	TSC_hg19_v1_chr1_+_32757740 BC000301 AK299792 AY627042 AB451297 AB451430 AB463736 CR541717 CU674144 DQ891398 DQ894577	-28082	+	D50405 NM_004964 TSC_hg19_v1_chr1_+_32757707	-28114	+	AK225555 TSC_hg19_v1_chr1_+_32757704 AK296308 AK313061	-28119	+	TSC_hg19_v1_chr1_-_32801835 AB528178 CU688192 AM393505 DQ893237 DQ896567 X70326 AL713653 AY007131 BC007904 BC066915 NM_023009	15909	-	BC035354 NM_052841	42007	+	NM_001167676	42021	-	BC000301|HDAC1|3065|histone deacetylase 1##AK299792|HDAC1|3065|histone deacetylase 1##AY627042|HDAC1|3065|histone deacetylase 1##AB451297|HDAC1|3065|histone deacetylase 1##AB451430|HDAC1|3065|histone deacetylase 1##CR541717|HDAC1|3065|histone deacetylase 1##DQ891398|HDAC1|3065|histone deacetylase 1##DQ894577|HDAC1|3065|histone deacetylase 1##D50405|HDAC1|3065|histone deacetylase 1##NM_004964|HDAC1|3065|histone deacetylase 1##AK225555|HDAC1|3065|histone deacetylase 1##AK296308|HDAC1|3065|histone deacetylase 1##AK313061|HDAC1|3065|histone deacetylase 1##AM393505|MARCKSL1|65108|MARCKS-like 1##DQ893237|MARCKSL1|65108|MARCKS-like 1##DQ896567|MARCKSL1|65108|MARCKS-like 1##X70326|MARCKSL1|65108|MARCKS-like 1##AL713653|MARCKSL1|65108|MARCKS-like 1##AY007131|MARCKSL1|65108|MARCKS-like 1##BC007904|MARCKSL1|65108|MARCKS-like 1##BC066915|MARCKSL1|65108|MARCKS-like 1##NM_023009|MARCKSL1|65108|MARCKS-like 1##BC035354|TSSK3|81629|testis-specific serine kinase 3##NM_052841|TSSK3|81629|testis-specific serine kinase 3##NM_001167676|LOC100128071|100128071|uncharacterized LOC100128071	0.990831	0.0	denovo_WM_7:9:0.605
chr6	34649547	34649720	reg1004079.p3	6.835	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-125537	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-166979	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-215729	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	14913	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	14993	-	NM_003093	75237	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.997699	0.0	
chr7	45038809	45038924	reg1004226.p1	6.834	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-12626	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-20169	-	BC113544 BC117241 TSC_hg19_v1_chr7_-_45018675 AB290179 AL832302	-20204	-	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	988	+	NM_001029835 AK298671 AK303216 AK303534	28385	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	89633	-	AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##BC113544|MYO1G|64005|myosin IG##BC117241|MYO1G|64005|myosin IG##AB290179|MYO1G|64005|myosin IG##AL832302|MYO1G|64005|myosin IG##AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing	0.996687	0.0	denovo_WM_7:-44:0.985
chr1	211863385	211863526	reg1006173.p2	6.833	+	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-14547	-	TSC_hg19_v1_chr1_-_211752056 BC121015 BC121016 NM_021194	-111367	-	AB451467 TSC_hg19_v1_chr1_-_211752048	-111455	-	BC034621 TSC_hg19_v1_chr1_-_212003681	140293	-	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	140675	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	345435	-	BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC121015|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC121016|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##NM_021194|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AB451467|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7	1.031635	0.0	
chr12	92602270	92602380	reg1004637.p1	6.832	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-62682	-	NM_001920	-1025520	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-1025745	-	AJ845165 AJ845166 NM_001025233	215409	+	AJ845168 NM_001025232	219598	-	NM_001037671 NM_001178097	494293	+	BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74	1.90068	0.0	denovo_WM_7:-69:0.329	denovo_WM_7:-73:0.229	denovo_WM_7:-88:0.374
chr19	41768921	41769093	reg1006031.p3	6.832	+	TSC_hg19_v1_chr19_+_41768461 NM_144732 AK225850 AK023006 AK308078	-540	+	TSC_hg19_v1_chr19_+_41725293 AK310881 AB385214 DQ894117	-43719	+	TSC_hg19_v1_chr19_+_41725261 S65125 X57019	-43746	+	TSC_hg19_v1_chr19_+_41770226 NM_007040 AJ007509	1142	+	TSC_hg19_v1_chr19_+_41770281 AK022863 AK127057 AK291762 AK308156	1270	+	TSC_hg19_v1_chr19_+_41770326 BC009988	1299	+	NM_144732|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK225850|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK023006|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308078|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK310881|AXL|558|AXL receptor tyrosine kinase##DQ894117|AXL|558|AXL receptor tyrosine kinase##S65125|AXL|558|AXL receptor tyrosine kinase##X57019|AXL|558|AXL receptor tyrosine kinase##NM_007040|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AJ007509|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK022863|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK127057|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK291762|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308156|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##BC009988|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1	1.107327	0.0	
chr14	51326691	51326840	reg1004951.p2	6.830	+	AB046785 TSC_hg19_v1_chr14_-_51297860 BC065521 AF223937 AF223938 AF223939 AF302773 AY736182 NM_016350 NM_020921 NM_182944 NM_182946	-28945	-	TSC_hg19_v1_chr14_-_51135048 AK225896 AK095903	-191697	-	BC020537 TSC_hg19_v1_chr14_-_51135025 BC006385 NM_021818 AK021500	-191739	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	12113	+	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	84417	-	CU680598 TSC_hg19_v1_chr14_-_51561792 BC013414 D87458	235012	-	AB046785|NIN|51199|ninein (GSK3B interacting protein)##BC065521|NIN|51199|ninein (GSK3B interacting protein)##AF223937|NIN|51199|ninein (GSK3B interacting protein)##AF223938|NIN|51199|ninein (GSK3B interacting protein)##AF223939|NIN|51199|ninein (GSK3B interacting protein)##AF302773|NIN|51199|ninein (GSK3B interacting protein)##AY736182|NIN|51199|ninein (GSK3B interacting protein)##NM_016350|NIN|51199|ninein (GSK3B interacting protein)##NM_020921|NIN|51199|ninein (GSK3B interacting protein)##NM_182944|NIN|51199|ninein (GSK3B interacting protein)##NM_182946|NIN|51199|ninein (GSK3B interacting protein)##AK225896|SAV1|60485|salvador homolog 1 (Drosophila)##AK095903|SAV1|60485|salvador homolog 1 (Drosophila)##BC020537|SAV1|60485|salvador homolog 1 (Drosophila)##BC006385|SAV1|60485|salvador homolog 1 (Drosophila)##NM_021818|SAV1|60485|salvador homolog 1 (Drosophila)##AK021500|SAV1|60485|salvador homolog 1 (Drosophila)##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver##BC013414|TRIM9|114088|tripartite motif containing 9##D87458|TRIM9|114088|tripartite motif containing 9	1.992959	0.0	denovo_WM_7:-32:0.250	denovo_WM_7:-33:0.675	denovo_WM_7:-48:0.822
chr11	94829534	94829714	reg1000513.p2	6.829	+	TSC_hg19_v1_chr11_+_94823009 AK291673 NM_015036 BC026191 AB020637 BC071171 AB385387	-6612	+	TSC_hg19_v1_chr11_+_94800406 AF031166	-29216	+	TSC_hg19_v1_chr11_+_94800329 BC057783 BC006181	-29280	+	BC017296 AK096300 NM_144665 TSC_hg19_v1_chr11_-_94964367	134680	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	693027	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	693109	-	AK291673|ENDOD1|23052|endonuclease domain containing 1##NM_015036|ENDOD1|23052|endonuclease domain containing 1##BC026191|ENDOD1|23052|endonuclease domain containing 1##AB020637|ENDOD1|23052|endonuclease domain containing 1##BC071171|ENDOD1|23052|endonuclease domain containing 1##AF031166|SRSF8|10929|serine/arginine-rich splicing factor 8##BC057783|SRSF8|10929|serine/arginine-rich splicing factor 8##BC017296|SESN3|143686|sestrin 3##AK096300|SESN3|143686|sestrin 3##NM_144665|SESN3|143686|sestrin 3##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B	0.0	0.0	
chr21	37682640	37682747	reg1002876.p2	6.829	+	AJ237839 NM_005128	-145855	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	-154062	-	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	-175344	+	TSC_hg19_v1_chr21_+_37692548 BC058002 NM_015358 AK295133 BC007311 D50926 BC094779 BC132731 BC144116 AK292957 AB489143	9826	+	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	74997	+	BC012126 NM_012130 AY355349	156038	-	AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##BC058002|MORC3|23515|MORC family CW-type zinc finger 3##NM_015358|MORC3|23515|MORC family CW-type zinc finger 3##AK295133|MORC3|23515|MORC family CW-type zinc finger 3##BC007311|MORC3|23515|MORC family CW-type zinc finger 3##D50926|MORC3|23515|MORC family CW-type zinc finger 3##BC094779|MORC3|23515|MORC family CW-type zinc finger 3##BC132731|MORC3|23515|MORC family CW-type zinc finger 3##BC144116|MORC3|23515|MORC family CW-type zinc finger 3##AK292957|MORC3|23515|MORC family CW-type zinc finger 3##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14	0.987949	0.0	denovo_WM_7:34:0.975
chr8	74789785	74789929	reg1004186.p1	6.829	+	AK290141 NM_001164384	-129915	-	TSC_hg19_v1_chr8_-_74659707 AK307841 AK293729	-130161	-	TSC_hg19_v1_chr8_-_74659103 AK294466 CR627442 NM_001164380 NM_001164381 NM_001164382 NM_001164383 NM_001164385 NM_014393	-130699	-	TSC_hg19_v1_chr8_-_74791061 AK001873 AK021735 BC010900 EU446497 BX538145	1203	-	TSC_hg19_v1_chr8_-_74791074 BX648427 AK225554	1217	-	TSC_hg19_v1_chr8_-_74791084 AY948289	1224	-	AK290141|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164384|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK307841|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK293729|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK294466|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##CR627442|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164380|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164381|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164382|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164383|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164385|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_014393|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK001873|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AK021735|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BC010900|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##EU446497|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BX538145|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##BX648427|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AK225554|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)##AY948289|UBE2W|55284|ubiquitin-conjugating enzyme E2W (putative)	0.843321	0.0	denovo_WM_7:-37:0.831
chr10	100411448	100411548	reg1005927.p1	6.828	+	TSC_hg19_v1_chr10_-_100206705 NM_000195 NM_182639	-204787	-	TSC_hg19_v1_chr10_-_100206661 U65676 BC000175 AK295821 U96721	-204823	-	BC002514 TSC_hg19_v1_chr10_-_100206650	-204852	-	AJ299720 AK094037 BC112356 AF282885 AF282886 AF282887 AJ299719 AK314759 NM_001166244 NM_001166245 NM_001166246 NM_021828	584096	-	TSC_hg19_v1_chr10_+_101088794 NM_020348	677326	+	TSC_hg19_v1_chr10_+_101089114 AK308618	677628	+	NM_000195|HPS1|3257|Hermansky-Pudlak syndrome 1##NM_182639|HPS1|3257|Hermansky-Pudlak syndrome 1##U65676|HPS1|3257|Hermansky-Pudlak syndrome 1##BC000175|HPS1|3257|Hermansky-Pudlak syndrome 1##AK295821|HPS1|3257|Hermansky-Pudlak syndrome 1##U96721|HPS1|3257|Hermansky-Pudlak syndrome 1##BC002514|HPS1|3257|Hermansky-Pudlak syndrome 1##AJ299720|HPSE2|60495|heparanase 2##AK094037|HPSE2|60495|heparanase 2##BC112356|HPSE2|60495|heparanase 2##AF282885|HPSE2|60495|heparanase 2##AF282886|HPSE2|60495|heparanase 2##AF282887|HPSE2|60495|heparanase 2##AJ299719|HPSE2|60495|heparanase 2##AK314759|HPSE2|60495|heparanase 2##NM_001166244|HPSE2|60495|heparanase 2##NM_001166245|HPSE2|60495|heparanase 2##NM_001166246|HPSE2|60495|heparanase 2##NM_021828|HPSE2|60495|heparanase 2##NM_020348|CNNM1|26507|cyclin M1##AK308618|CNNM1|26507|cyclin M1	0.999695	0.0	denovo_WM_7:39:0.523	denovo_WM_7:40:0.203	denovo_WM_7:42:0.202
chr9	102007455	102007562	reg1003716.p2	6.828	+	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-22921	+	TSC_hg19_v1_chr9_-_101984233 NM_033087	-23265	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	-23291	-	TSC_hg19_v1_chr9_-_102582187 AK057451	574657	-	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	576649	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	661419	+	AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17	0.0	0.0	
chr1	161091744	161091901	reg1005761.p1	6.827	+	NM_001185092 NM_005600 TSC_hg19_v1_chr1_+_161087894 AF069987 AK313323 NM_001185093 BC046149 NM_001185094 AK296606 BC039150	-3872	+	TSC_hg19_v1_chr1_-_161087839 NM_012394	-3970	-	AB464064 CU680334 AF151065 AF117237 TSC_hg19_v1_chr1_-_161087828 BC047042 AF165883 AK024531 BC012464 AK315736	-3997	-	TSC_hg19_v1_chr1_-_161102257 NM_001039712	10439	-	TSC_hg19_v1_chr1_-_161102376 BC016724 AK296629 AK001497	10552	-	BC013910 TSC_hg19_v1_chr1_-_161102470 NM_001039711 NM_032998	10645	-	NM_001185092|NIT1|4817|nitrilase 1##NM_005600|NIT1|4817|nitrilase 1##AF069987|NIT1|4817|nitrilase 1##AK313323|NIT1|4817|nitrilase 1##NM_001185093|NIT1|4817|nitrilase 1##BC046149|NIT1|4817|nitrilase 1##NM_001185094|NIT1|4817|nitrilase 1##AK296606|NIT1|4817|nitrilase 1##NM_012394|PFDN2|5202|prefoldin subunit 2##AF151065|PFDN2|5202|prefoldin subunit 2##AF117237|PFDN2|5202|prefoldin subunit 2##BC047042|PFDN2|5202|prefoldin subunit 2##AF165883|PFDN2|5202|prefoldin subunit 2##AK024531|PFDN2|5202|prefoldin subunit 2##BC012464|PFDN2|5202|prefoldin subunit 2##AK315736|PFDN2|5202|prefoldin subunit 2##NM_001039712|DEDD|9191|death effector domain containing##BC016724|DEDD|9191|death effector domain containing##AK296629|DEDD|9191|death effector domain containing##AK001497|DEDD|9191|death effector domain containing##BC013910|DEDD|9191|death effector domain containing##NM_001039711|DEDD|9191|death effector domain containing##NM_032998|DEDD|9191|death effector domain containing	1.195606	0.0	denovo_WM_7:0:0.249	denovo_WM_7:0:0.324	denovo_WM_7:1:0.324
chr15	93443310	93443416	reg1001689.p1	6.825	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-165974	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-244484	-	AK057393 NM_153040	-428457	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	123	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	217	+	AK295909 TSC_hg19_v1_chr15_+_93447798	4397	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	0.995937	0.0	
chr21	30476565	30476680	reg1005682.p1	6.825	+	AY171599 NM_020152	-23750	+	AK308063 TSC_hg19_v1_chr21_-_30445995 AK298801 BC072001 BC005220 NM_006585	-30633	-	TSC_hg19_v1_chr21_-_30445966 BC012584 BC095470	-30665	-	TSC_hg19_v1_chr21_+_30517918 AK309998 EF219160	41288	+	TSC_hg19_v1_chr21_+_30671158 AK291021 AB002803	194542	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	194598	+	AY171599|C21orf7|56911|chromosome 21 open reading frame 7##NM_020152|C21orf7|56911|chromosome 21 open reading frame 7##AK308063|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK298801|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC072001|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC005220|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##NM_006585|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC012584|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC095470|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK309998|C21orf7|56911|chromosome 21 open reading frame 7##EF219160|C21orf7|56911|chromosome 21 open reading frame 7##AK291021|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AB002803|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1	0.120628	0.0	
chr8	126122949	126123129	reg1004085.p1	6.825	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-18942	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-18982	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-19017	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	319540	+	TSC_hg19_v1_chr8_-_126963395 BX648371	840374	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1447516	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	2.44956	0.0	denovo_WM_7:11:0.687	denovo_WM_7:-17:0.717	denovo_WM_7:-32:0.687
chr5	61603142	61603286	reg1005030.p1	6.823	+	TSC_hg19_v1_chr5_+_61602278 AK297347 AK307880 EF560716 EF560728 EU832810 GQ129246 AK315866	-944	+	TSC_hg19_v1_chr5_+_61602066 BC047544	-1132	+	TSC_hg19_v1_chr5_+_61601970 NM_001098511 NM_001243952 NM_001243953 NM_004520	-1241	+	AB590206 DQ891482 DQ894669 DQ894841 TSC_hg19_v1_chr5_-_61699710 AF102147 BC010874 AK299480	96444	-	TSC_hg19_v1_chr5_-_61699730 BC002841 BC017885 NM_014473 AK292723	96545	-	TSC_hg19_v1_chr5_+_61708589 NM_016338 AK001696 BC033776	105410	+	AK297347|KIF2A|3796|kinesin heavy chain member 2A##AK307880|KIF2A|3796|kinesin heavy chain member 2A##EF560716|KIF2A|3796|kinesin heavy chain member 2A##EF560728|KIF2A|3796|kinesin heavy chain member 2A##EU832810|KIF2A|3796|kinesin heavy chain member 2A##GQ129246|KIF2A|3796|kinesin heavy chain member 2A##AK315866|KIF2A|3796|kinesin heavy chain member 2A##BC047544|KIF2A|3796|kinesin heavy chain member 2A##NM_001098511|KIF2A|3796|kinesin heavy chain member 2A##NM_001243952|KIF2A|3796|kinesin heavy chain member 2A##NM_001243953|KIF2A|3796|kinesin heavy chain member 2A##NM_004520|KIF2A|3796|kinesin heavy chain member 2A##DQ891482|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##DQ894669|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##DQ894841|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##AF102147|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##BC010874|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##AK299480|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##BC002841|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##BC017885|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##NM_014473|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##AK292723|DIMT1|27292|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)##NM_016338|IPO11|51194|importin 11##AK001696|IPO11|51194|importin 11##BC033776|IPO11|51194|importin 11	0.699312	0.0	denovo_WM_7:-8:0.249	denovo_WM_7:-9:0.434
chr5	141404380	141404560	reg1005893.p2	6.822	+	D31766 TSC_hg19_v1_chr5_-_141392593 AK290686 AK022779 AK296452 BC020769 BC022322 NM_005471	-11892	-	TSC_hg19_v1_chr5_+_141348760 BX647955	-55716	+	TSC_hg19_v1_chr5_+_141348705 AK023698 AK023884 AK294262 NM_183401	-55767	+	AK075495 TSC_hg19_v1_chr5_+_141488283	83781	+	TSC_hg19_v1_chr5_+_141488343 NM_030571 AK315481 AY192728	83878	+	AK075524 TSC_hg19_v1_chr5_+_141488384	83914	+	D31766|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK290686|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK022779|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK296452|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC020769|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC022322|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##NM_005471|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BX647955|RNF14|9604|ring finger protein 14##AK023698|RNF14|9604|ring finger protein 14##AK023884|RNF14|9604|ring finger protein 14##AK294262|RNF14|9604|ring finger protein 14##NM_183401|RNF14|9604|ring finger protein 14##AK075495|NDFIP1|80762|Nedd4 family interacting protein 1##NM_030571|NDFIP1|80762|Nedd4 family interacting protein 1##AK315481|NDFIP1|80762|Nedd4 family interacting protein 1##AY192728|NDFIP1|80762|Nedd4 family interacting protein 1##AK075524|NDFIP1|80762|Nedd4 family interacting protein 1	0.994928	0.0	denovo_WM_7:-26:0.995
chr6	166616060	166616187	reg1004831.p2	6.822	+	BC098425 NM_003181	-33994	-	BC008632 BC039614 TSC_hg19_v1_chr6_-_166401541 BX647106	-214589	-	TSC_hg19_v1_chr6_-_166401424 AK289375	-214690	-	BC034775 NM_175922 TSC_hg19_v1_chr6_-_166721880	105753	-	BC018969 NM_145169 TSC_hg19_v1_chr6_-_166756020	139884	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	139911	-	BC098425|T|6862|T, brachyury homolog (mouse)##NM_003181|T|6862|T, brachyury homolog (mouse)##BC008632|LINC00473|90632|long intergenic non-protein coding RNA 473##BC039614|LINC00473|90632|long intergenic non-protein coding RNA 473##AK289375|LINC00473|90632|long intergenic non-protein coding RNA 473##BC034775|PRR18|285800|proline rich 18##NM_175922|PRR18|285800|proline rich 18##BC018969|SFT2D1|113402|SFT2 domain containing 1##NM_145169|SFT2D1|113402|SFT2 domain containing 1##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1	0.992182	0.0	
chr8	137084669	137084849	reg1000995.p1	6.822	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-614558	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-615101	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1359485	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	2424347	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2841485	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3630523	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	1.353749	0.0	denovo_WM_7:-34:0.362	denovo_WM_7:-35:0.315
chr1	199121241	199121421	reg1004290.p2	6.821	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-214784	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-513001	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-513106	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	875538	+	AK316513 TSC_hg19_v1_chr1_+_200011716	890393	+	NM_001105517	1061324	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.0	0.0	
chr12	21833388	21833530	reg1005593.p1	6.821	+	TSC_hg19_v1_chr12_-_21810792 NM_002300	-22664	-	TSC_hg19_v1_chr12_-_21810774 AK312328 BC015122	-22686	-	TSC_hg19_v1_chr12_-_21810756 BC002362 AY189689	-22699	-	BC000544 AK291821 D50312 NM_004982	94221	-	NM_005691 NM_020297	256168	-	AK056519 TSC_hg19_v1_chr12_-_22094251 BC033804	260791	-	NM_002300|LDHB|3945|lactate dehydrogenase B##AK312328|LDHB|3945|lactate dehydrogenase B##BC015122|LDHB|3945|lactate dehydrogenase B##BC002362|LDHB|3945|lactate dehydrogenase B##AY189689|LDHB|3945|lactate dehydrogenase B##BC000544|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##AK291821|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##D50312|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##NM_004982|KCNJ8|3764|potassium inwardly-rectifying channel, subfamily J, member 8##NM_005691|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9##NM_020297|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9##AK056519|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9##BC033804|ABCC9|10060|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	0.99911	0.99736	CTCF.p2:29:0.997	denovo_WM_7:-58:0.310	denovo_WM_7:-59:0.310	denovo_WM_7:-60:0.310
chr11	66789310	66789464	reg1008172.p1	6.820	+	AK026328 NM_001136485	-46637	+	TSC_hg19_v1_chr11_-_66725855 BC011617 AK297705 NM_000920 NM_001040716	-63539	-	U30891 NM_022172 TSC_hg19_v1_chr11_-_66675385 S72370 U30890	-114007	-	AK315810 NM_001177880	802	+	NM_177963 AK289672 AK289727 BC037406	1465	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	34899	+	AK026328|C11orf86|254439|chromosome 11 open reading frame 86##NM_001136485|C11orf86|254439|chromosome 11 open reading frame 86##BC011617|PC|5091|pyruvate carboxylase##AK297705|PC|5091|pyruvate carboxylase##NM_000920|PC|5091|pyruvate carboxylase##NM_001040716|PC|5091|pyruvate carboxylase##U30891|PC|5091|pyruvate carboxylase##NM_022172|PC|5091|pyruvate carboxylase##S72370|PC|5091|pyruvate carboxylase##U30890|PC|5091|pyruvate carboxylase##AK315810|SYT12|91683|synaptotagmin XII##NM_001177880|SYT12|91683|synaptotagmin XII##NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##NM_014578|RHOD|29984|ras homolog gene family, member D	1.964385	0.0	denovo_WM_7:20:0.711	denovo_WM_7:39:0.497	denovo_WM_7:42:0.431
chr16	27410320	27410478	reg1003068.p3	6.820	+	TSC_hg19_v1_chr16_+_27341339 BC136365 BC151131	-69055	+	TSC_hg19_v1_chr16_+_27325301 BC110343 AK223591 X52425	-85081	+	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	-85145	+	AK292663 NM_181078 NM_181079 AK312825	3088	+	NM_021798 AY358826 AF254067	28205	+	TSC_hg19_v1_chr16_-_27561218 BX648143	150819	-	BC136365|IL4R|3566|interleukin 4 receptor##BC151131|IL4R|3566|interleukin 4 receptor##BC110343|IL4R|3566|interleukin 4 receptor##AK223591|IL4R|3566|interleukin 4 receptor##X52425|IL4R|3566|interleukin 4 receptor##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor##AK292663|IL21R|50615|interleukin 21 receptor##NM_181078|IL21R|50615|interleukin 21 receptor##NM_181079|IL21R|50615|interleukin 21 receptor##AK312825|IL21R|50615|interleukin 21 receptor##NM_021798|IL21R|50615|interleukin 21 receptor##AY358826|IL21R|50615|interleukin 21 receptor##AF254067|IL21R|50615|interleukin 21 receptor##BX648143|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa	0.81771	0.0	denovo_WM_7:-19:0.546
chr2	102673736	102673875	reg1003111.p1	6.820	+	BC027733 BC012346 NM_173343	-58348	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-65442	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-165273	+	TSC_hg19_v1_chr2_+_102759205 X16896	85427	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	96615	+	AF284434 NM_003854 U49065 BC107064	129643	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.994362	0.0	
chr19	12886460	12886533	reg1001054.p1	6.819	+	TSC_hg19_v1_chr19_-_12886422 NM_001100176 NM_013312	-69	-	CU680326 DQ891339 DQ893360 DQ894521 DQ896679 AB527820 TSC_hg19_v1_chr19_-_12886342 AF044924 BC012443	-169	-	AF440756 AY515705 NM_017682 AK000139 AK225232	-23058	+	TSC_hg19_v1_chr19_+_12902286 DQ650707	15794	+	AK222532 TSC_hg19_v1_chr19_+_12902299 AK313737 BC110372 BC004250 BC009465 BC009466 NM_002229 X51345	15817	+	BC000452 BC003022 BC064138 TSC_hg19_v1_chr19_-_12912615 Z22548 AK289485 AK293957 BC039428 AK022395 NM_005809 NM_181738	26168	-	NM_001100176|HOOK2|29911|hook homolog 2 (Drosophila)##NM_013312|HOOK2|29911|hook homolog 2 (Drosophila)##DQ891339|HOOK2|29911|hook homolog 2 (Drosophila)##DQ893360|HOOK2|29911|hook homolog 2 (Drosophila)##DQ894521|HOOK2|29911|hook homolog 2 (Drosophila)##DQ896679|HOOK2|29911|hook homolog 2 (Drosophila)##AF044924|HOOK2|29911|hook homolog 2 (Drosophila)##BC012443|HOOK2|29911|hook homolog 2 (Drosophila)##AF440756|BEST2|54831|bestrophin 2##AY515705|BEST2|54831|bestrophin 2##NM_017682|BEST2|54831|bestrophin 2##AK000139|BEST2|54831|bestrophin 2##AK225232|BEST2|54831|bestrophin 2##AK222532|JUNB|3726|jun B proto-oncogene##AK313737|JUNB|3726|jun B proto-oncogene##BC004250|JUNB|3726|jun B proto-oncogene##BC009465|JUNB|3726|jun B proto-oncogene##BC009466|JUNB|3726|jun B proto-oncogene##NM_002229|JUNB|3726|jun B proto-oncogene##X51345|JUNB|3726|jun B proto-oncogene##BC000452|PRDX2|7001|peroxiredoxin 2##BC003022|PRDX2|7001|peroxiredoxin 2##BC064138|PRDX2|7001|peroxiredoxin 2##Z22548|PRDX2|7001|peroxiredoxin 2##AK289485|PRDX2|7001|peroxiredoxin 2##AK293957|PRDX2|7001|peroxiredoxin 2##BC039428|PRDX2|7001|peroxiredoxin 2##AK022395|PRDX2|7001|peroxiredoxin 2##NM_005809|PRDX2|7001|peroxiredoxin 2##NM_181738|PRDX2|7001|peroxiredoxin 2	0.0	0.342508	CTCF.p2:26:0.343
chr21	45557594	45557774	reg1004895.p1	6.819	+	TSC_hg19_v1_chr21_+_45553564 D86062 BC003587 D86061	-4123	+	TSC_hg19_v1_chr21_+_45553491 NM_004649 NM_198155 U53003 BC002370 Y07572	-4179	+	TSC_hg19_v1_chr21_+_45527269 U53346 X95263 BC013309 BC014988	-30385	+	AF216749 CU687930 AB528572 AF199028 BC064637 AF289028 TSC_hg19_v1_chr21_-_45660825 AB014553 NM_015259	103082	-	TSC_hg19_v1_chr21_-_45660850 AK090492 AK290192 AK294031 AK311496 AK314369 AX746477	103173	-	AF194032 NM_013369 NM_175867	124414	-	D86062|C21orf33|8209|chromosome 21 open reading frame 33##BC003587|C21orf33|8209|chromosome 21 open reading frame 33##D86061|C21orf33|8209|chromosome 21 open reading frame 33##NM_004649|C21orf33|8209|chromosome 21 open reading frame 33##NM_198155|C21orf33|8209|chromosome 21 open reading frame 33##U53003|C21orf33|8209|chromosome 21 open reading frame 33##BC002370|C21orf33|8209|chromosome 21 open reading frame 33##Y07572|C21orf33|8209|chromosome 21 open reading frame 33##U53346|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##X95263|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC013309|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC014988|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##AF216749|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF199028|ICOSLG|23308|inducible T-cell co-stimulator ligand##BC064637|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF289028|ICOSLG|23308|inducible T-cell co-stimulator ligand##AB014553|ICOSLG|23308|inducible T-cell co-stimulator ligand##NM_015259|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK090492|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK290192|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK294031|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK311496|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK314369|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF194032|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_013369|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_175867|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like	1.987597	0.0	denovo_WM_7:72:0.946	denovo_WM_7:-99:0.302	denovo_WM_7:-100:0.302	denovo_WM_7:-101:0.302
chr4	129343623	129343740	reg1003785.p1	6.819	+	AK131272 NM_006320	-133698	-	TSC_hg19_v1_chr4_-_129208969 BC092478	-134690	-	AK091741 AX747155 TSC_hg19_v1_chr4_-_129208964 BC016692	-134717	-	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	387189	+	TSC_hg19_v1_chr4_+_129732427 BC032376	388772	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	670909	-	AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC092478|PGRMC2|10424|progesterone receptor membrane component 2##AK091741|PGRMC2|10424|progesterone receptor membrane component 2##BC016692|PGRMC2|10424|progesterone receptor membrane component 2##NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##BC032376|PHF17|79960|PHD finger protein 17##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1	0.996617	0.0	denovo_WM_7:15:0.424	denovo_WM_7:16:0.424
chr6	73392970	73393080	reg1004868.p1	6.819	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	-60964	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	-61136	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	-61455	+	BC004267 NM_001126063	542149	-	TSC_hg19_v1_chr6_-_73972815 BC022080 NM_030568 AK054891	579841	-	TSC_hg19_v1_chr6_+_73972992 BC031876 AK094485	579948	+	AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC004267|KHDC1L|100129128|KH homology domain containing 1-like##NM_001126063|KHDC1L|100129128|KH homology domain containing 1-like##BC022080|KHDC1|80759|KH homology domain containing 1##NM_030568|KHDC1|80759|KH homology domain containing 1	0.999559	0.0	
chr20	5992092	5992248	reg1004999.p1	6.818	+	NM_001127458 AK310368	-4271	+	TSC_hg19_v1_chr20_+_5986970 AL832419	-5201	+	TSC_hg19_v1_chr20_+_5986768 BC069010 AB463464 DQ386730	-5344	+	TSC_hg19_v1_chr20_-_6034626 AK290123 AK172833 BC027720 NM_152611	42486	-	TSC_hg19_v1_chr20_-_6103678 AK314394 BC040545 AF443278	111504	-	BC035882 TSC_hg19_v1_chr20_-_6103891	111707	-	NM_001127458|CRLS1|54675|cardiolipin synthase 1##AK310368|CRLS1|54675|cardiolipin synthase 1##AL832419|CRLS1|54675|cardiolipin synthase 1##BC069010|CRLS1|54675|cardiolipin synthase 1##DQ386730|CRLS1|54675|cardiolipin synthase 1##AK290123|LRRN4|164312|leucine rich repeat neuronal 4##AK172833|LRRN4|164312|leucine rich repeat neuronal 4##BC027720|LRRN4|164312|leucine rich repeat neuronal 4##NM_152611|LRRN4|164312|leucine rich repeat neuronal 4##AK314394|FERMT1|55612|fermitin family member 1##BC040545|FERMT1|55612|fermitin family member 1##AF443278|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1	1.99862	0.0	denovo_WM_7:56:0.310	denovo_WM_7:57:0.248	denovo_WM_7:74:0.259	denovo_WM_7:75:0.321
chr5	108804534	108804673	reg1005066.p1	6.818	+	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	-58982	-	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-719931	+	AK293376 J03358 NM_005246 AK296874	-721041	+	TSC_hg19_v1_chr5_+_109025072 BC031659	220461	+	TSC_hg19_v1_chr5_+_109025096 BC111062	220494	+	TSC_hg19_v1_chr5_+_109025138 NM_002372	220542	+	BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1##NM_002372|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.98689	0.440063	denovo_WM_7:-30:0.837	CTCF.p2:83:0.440
chr10	21903101	21903233	reg1004980.p1	6.817	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-79542	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-79773	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-79891	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	389282	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	389498	-	NM_001199938	595744	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	1.952149	0.0	denovo_WM_7:-19:0.823
chr6	116419159	116419306	reg1005915.p4	6.817	+	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	-37350	-	AF503292 NM_153612 BC093911 BC093913	-2035208	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-2126896	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	2777	+	AK097758 TSC_hg19_v1_chr6_-_116422450	3198	-	BC130621 BC130623 NM_000493	28028	-	BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1##BC130621|COL10A1|1300|collagen, type X, alpha 1##BC130623|COL10A1|1300|collagen, type X, alpha 1##NM_000493|COL10A1|1300|collagen, type X, alpha 1	1.407293	0.0	denovo_WM_7:36:0.217	denovo_WM_7:51:0.224
chr1	151128365	151128545	reg1000173.p1	6.814	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	-9408	-	BC027033 NM_144618 TSC_hg19_v1_chr1_+_151043238 AK092230 AX747418 AK313606 AK301882	-85271	+	TSC_hg19_v1_chr1_+_151032908 BC019253	-95546	+	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	675	+	TSC_hg19_v1_chr1_-_151138337 BX647911 NM_212551 AK298706 NM_001136543	9921	-	NM_001204856 NM_024041 AK301644 TSC_hg19_v1_chr1_+_151138545 AK056322 BC000264 DQ892531 DQ895742	10107	+	AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##BC027033|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##NM_144618|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK092230|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK313606|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK301882|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##BC019253|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BX647911|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_212551|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##AK298706|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001136543|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001204856|SCNM1|79005|sodium channel modifier 1##NM_024041|SCNM1|79005|sodium channel modifier 1##AK301644|SCNM1|79005|sodium channel modifier 1##AK056322|SCNM1|79005|sodium channel modifier 1##BC000264|SCNM1|79005|sodium channel modifier 1##DQ892531|SCNM1|79005|sodium channel modifier 1##DQ895742|SCNM1|79005|sodium channel modifier 1	0.0	0.0	
chr1	205254756	205254936	reg1000936.p1	6.814	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-18212	+	AK293734 NM_001242925	-56788	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-57763	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	35997	-	BC036076 TSC_hg19_v1_chr1_-_205313311	58464	-	AK299227 AK001610 NM_018203 AK096590	71194	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	1.990461	0.0	denovo_WM_7:1:0.841	denovo_WM_7:-28:0.314	denovo_WM_7:-29:0.314	denovo_WM_7:-30:0.314
chr15	89611926	89612045	reg1003897.p2	6.812	+	BC003610 AK095908 AK222735 AK223182 AK304627 AK310357 AK312640 U58516 AY141974 TSC_hg19_v1_chr15_-_89456611 NM_001114614 NM_005928	-155346	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	-155425	-	AY358500 AY037161 TSC_hg19_v1_chr15_-_89438761 BC053689 AY262759 NM_178232 AK292055 BC062320 AK292103	-173187	-	NM_007011 NM_152924	19395	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	19663	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	19718	+	BC003610|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK095908|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK222735|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK223182|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK304627|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK310357|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK312640|MFGE8|4240|milk fat globule-EGF factor 8 protein##U58516|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY141974|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_001114614|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_005928|MFGE8|4240|milk fat globule-EGF factor 8 protein##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY358500|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY037161|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC053689|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY262759|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_178232|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292055|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC062320|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292103|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_007011|ABHD2|11057|abhydrolase domain containing 2##NM_152924|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2	1.980876	0.0	denovo_WM_7:6:0.269	denovo_WM_7:7:0.698	denovo_WM_7:22:0.831
chr17	47030440	47030583	reg1005467.p1	6.812	+	AB464229 CU679209 CU691602 TSC_hg19_v1_chr17_-_47022173 AF156102 BC008976 NM_007241 BC038830	-8375	-	TSC_hg19_v1_chr17_+_46986002 BC015890 EF623992	-44539	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	-44677	+	BC096146 BC096147 BC096148 BC096149 BC069100 BC069663 BC069686 BC069746 M18185 NM_004123	15442	-	TSC_hg19_v1_chr17_+_47074830 NM_001160423 NM_006546 AF198254 AK313229	44319	+	AK302876 NM_001159388	179310	+	AF156102|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC008976|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##NM_007241|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC038830|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC015890|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##EF623992|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##BC096146|GIP|2695|gastric inhibitory polypeptide##BC096147|GIP|2695|gastric inhibitory polypeptide##BC096148|GIP|2695|gastric inhibitory polypeptide##BC096149|GIP|2695|gastric inhibitory polypeptide##BC069100|GIP|2695|gastric inhibitory polypeptide##BC069663|GIP|2695|gastric inhibitory polypeptide##BC069686|GIP|2695|gastric inhibitory polypeptide##BC069746|GIP|2695|gastric inhibitory polypeptide##M18185|GIP|2695|gastric inhibitory polypeptide##NM_004123|GIP|2695|gastric inhibitory polypeptide##NM_001160423|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##NM_006546|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AF198254|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AK313229|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AK302876|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##NM_001159388|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2	0.644458	0.0	denovo_WM_7:70:0.483
chr1	35497743	35497923	reg1001218.p2	6.811	+	TSC_hg19_v1_chr1_-_35497577 BC068534 NM_007167	-234	-	TSC_hg19_v1_chr1_-_35497547 BC107880 BC033903	-284	-	AK092067 AK310938 AL389985 AL832911 AK301461 AK310703 TSC_hg19_v1_chr1_-_35497543 AK299293	-338	-	TSC_hg19_v1_chr1_+_35544983 AK299779 NM_024772	47132	+	TSC_hg19_v1_chr1_+_35544986 AK096206 AK308655 CR936813 BC037313 BX537537 BX648307	47181	+	BC004534 TSC_hg19_v1_chr1_-_35658589	160712	-	BC068534|ZMYM6|9204|zinc finger, MYM-type 6##NM_007167|ZMYM6|9204|zinc finger, MYM-type 6##BC107880|ZMYM6|9204|zinc finger, MYM-type 6##BC033903|ZMYM6|9204|zinc finger, MYM-type 6##AK092067|ZMYM6|9204|zinc finger, MYM-type 6##AK310938|ZMYM6|9204|zinc finger, MYM-type 6##AL389985|ZMYM6|9204|zinc finger, MYM-type 6##AL832911|ZMYM6|9204|zinc finger, MYM-type 6##AK301461|ZMYM6|9204|zinc finger, MYM-type 6##AK310703|ZMYM6|9204|zinc finger, MYM-type 6##AK299293|ZMYM6|9204|zinc finger, MYM-type 6##AK299779|ZMYM1|79830|zinc finger, MYM-type 1##NM_024772|ZMYM1|79830|zinc finger, MYM-type 1##AK096206|ZMYM1|79830|zinc finger, MYM-type 1##AK308655|ZMYM1|79830|zinc finger, MYM-type 1##CR936813|ZMYM1|79830|zinc finger, MYM-type 1##BC037313|ZMYM1|79830|zinc finger, MYM-type 1##BX537537|ZMYM1|79830|zinc finger, MYM-type 1##BX648307|ZMYM1|79830|zinc finger, MYM-type 1##BC004534|SFPQ|6421|splicing factor proline/glutamine-rich	1.982959	0.0	
chr2	206849289	206849468	reg1005171.p1	6.811	+	TSC_hg19_v1_chr2_+_206547371 AK290934	-302017	+	TSC_hg19_v1_chr2_+_206547224 AK130198 AL833606 NM_003872 NM_018534 NM_201264 NM_201266 NM_201267 NM_201279 BX537423	-302200	+	TSC_hg19_v1_chr2_+_205410716 AB073472 AB092439 AF428250 AF428251 AF466152	-1438659	+	TSC_hg19_v1_chr2_-_206950902 AK096585 NM_017759	101533	-	AK295987 NM_001199984	174539	-	X61100 AK098395 BC018900 BC022368 TSC_hg19_v1_chr2_-_207024145 AK300585 BC030833 AK295705 AK295966 AK298320 BC004133 NM_001199981 NM_001199982 NM_001199983 NM_005006	174794	-	AK290934|NRP2|8828|neuropilin 2##AK130198|NRP2|8828|neuropilin 2##AL833606|NRP2|8828|neuropilin 2##NM_003872|NRP2|8828|neuropilin 2##NM_018534|NRP2|8828|neuropilin 2##NM_201264|NRP2|8828|neuropilin 2##NM_201266|NRP2|8828|neuropilin 2##NM_201267|NRP2|8828|neuropilin 2##NM_201279|NRP2|8828|neuropilin 2##BX537423|NRP2|8828|neuropilin 2##AB073472|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AB092439|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428250|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428251|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF466152|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AK096585|INO80D|54891|INO80 complex subunit D##NM_017759|INO80D|54891|INO80 complex subunit D##AK295987|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199984|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##X61100|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK098395|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC018900|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC022368|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK300585|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC030833|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295705|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295966|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK298320|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC004133|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199981|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199982|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199983|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_005006|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)	0.062627	0.0	
chr12	14218138	14218265	reg1005874.p2	6.810	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-85215	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-868472	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-868484	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	300434	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	320071	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	502408	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.997555	0.0	denovo_WM_7:-17:0.493	denovo_WM_7:-18:0.493
chr4	165527724	165527851	reg1006220.p1	6.809	+	AK289711 NM_001166373	-223381	-	NM_012403	-408925	-	AB463878 AK000675 AK301408 NM_017923	-993072	-	TSC_hg19_v1_chr4_+_165878104 AK056221 NM_153027	350315	+	TSC_hg19_v1_chr4_+_165878133 BC022381 CU692592	350364	+	BC089393 NM_001012414	371030	-	AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK056221|C4orf39|152756|chromosome 4 open reading frame 39##NM_153027|C4orf39|152756|chromosome 4 open reading frame 39##BC022381|C4orf39|152756|chromosome 4 open reading frame 39##BC089393|TRIM61|391712|tripartite motif containing 61##NM_001012414|TRIM61|391712|tripartite motif containing 61	0.052282	0.0	
chr8	101514886	101515057	reg1005604.p1	6.809	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-192686	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-192790	-	AB271913 AB271914 AB029316 NM_015435	-199500	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	56969	-	AK093906 AX748361 NM_152628	146921	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	218835	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	0.0	0.0	
chr16	19505159	19505314	reg1006180.p1	6.806	+	AY236494 NM_024780 BC038118 AK097718 BC027602 AK131202	-37432	+	BC070101 NM_001105248 NM_001105249	-83180	+	TSC_hg19_v1_chr16_+_19179561 NM_016524 BC004518 AF220560 AB527504 CU678742	-325485	+	AY463154 BC014981 TSC_hg19_v1_chr16_-_19533421 AF306698 BC025273 BC001538 AF212862 BC012153 AK312912 NM_016641	28140	-	NM_001199022 NM_014711 TSC_hg19_v1_chr16_+_19535277 BC036654 AK300426 AB007879 CR749255 BC030223	29995	+	AK294885 NM_020314	61500	+	AY236494|TMC5|79838|transmembrane channel-like 5##NM_024780|TMC5|79838|transmembrane channel-like 5##BC038118|TMC5|79838|transmembrane channel-like 5##AK097718|TMC5|79838|transmembrane channel-like 5##BC027602|TMC5|79838|transmembrane channel-like 5##AK131202|TMC5|79838|transmembrane channel-like 5##BC070101|TMC5|79838|transmembrane channel-like 5##NM_001105248|TMC5|79838|transmembrane channel-like 5##NM_001105249|TMC5|79838|transmembrane channel-like 5##NM_016524|SYT17|51760|synaptotagmin XVII##BC004518|SYT17|51760|synaptotagmin XVII##AF220560|SYT17|51760|synaptotagmin XVII##AY463154|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC014981|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF306698|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC025273|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC001538|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF212862|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC012153|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AK312912|GDE1|51573|glycerophosphodiester phosphodiesterase 1##NM_016641|GDE1|51573|glycerophosphodiester phosphodiesterase 1##NM_001199022|CCP110|9738|centriolar coiled coil protein 110kDa##NM_014711|CCP110|9738|centriolar coiled coil protein 110kDa##BC036654|CCP110|9738|centriolar coiled coil protein 110kDa##AK300426|CCP110|9738|centriolar coiled coil protein 110kDa##AB007879|CCP110|9738|centriolar coiled coil protein 110kDa##CR749255|CCP110|9738|centriolar coiled coil protein 110kDa##BC030223|CCP110|9738|centriolar coiled coil protein 110kDa##AK294885|C16orf62|57020|chromosome 16 open reading frame 62##NM_020314|C16orf62|57020|chromosome 16 open reading frame 62	1.019121	0.0	denovo_WM_7:-22:0.625	denovo_WM_7:-23:0.345
chr2	237966661	237966788	reg1002483.p2	6.806	+	NM_020311 TSC_hg19_v1_chr2_+_237478467 AK023507 AK291659 AF030297	-488296	+	BC043504 NM_024726 AK294105 BC028699	-550592	-	NM_212556 BX647589	-793730	-	BC036499 NM_006710 NM_198189	27294	+	TSC_hg19_v1_chr2_-_237994424 AK056246	27713	-	TSC_hg19_v1_chr2_+_237994528 AK294078 AK313437	27796	+	NM_020311|CXCR7|57007|chemokine (C-X-C motif) receptor 7##AK291659|CXCR7|57007|chemokine (C-X-C motif) receptor 7##AF030297|CXCR7|57007|chemokine (C-X-C motif) receptor 7##BC043504|IQCA1|79781|IQ motif containing with AAA domain 1##NM_024726|IQCA1|79781|IQ motif containing with AAA domain 1##AK294105|IQCA1|79781|IQ motif containing with AAA domain 1##BC028699|IQCA1|79781|IQ motif containing with AAA domain 1##NM_212556|ASB18|401036|ankyrin repeat and SOCS box containing 18##BX647589|ASB18|401036|ankyrin repeat and SOCS box containing 18##BC036499|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##NM_006710|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##NM_198189|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##AK056246|LOC401037|401037|uncharacterized LOC401037##AK294078|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##AK313437|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)	0.0	0.0	
chr4	25877146	25877326	reg1004081.p2	6.804	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-12682	-	NM_001177999 AK314514	-219146	+	NM_001177998 NM_006424 AK292675 AF111856 AK075046 TSC_hg19_v1_chr4_+_25657473 AF146796 BC142704 BC146666	-219776	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	38628	+	L07875 BC020780 NM_005349 NM_203283	444083	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	445073	+	BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001177998|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_006424|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK292675|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF111856|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK075046|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF146796|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC142704|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC146666|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.835783	0.0	denovo_WM_7:77:0.533
chr11	9528332	9528483	reg1005775.p2	6.803	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	-45864	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-46279	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-122187	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	66806	+	X62048 TSC_hg19_v1_chr11_+_9595313	66918	+	BC051831 TSC_hg19_v1_chr11_+_9595437	67026	+	NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)	1.175411	0.998905	denovo_WM_7:-41:0.382	denovo_WM_7:-42:0.201	CTCF.p2:75:0.999
chr1	90246378	90246529	reg1004275.p1	6.803	+	TSC_hg19_v1_chr1_+_90098707 AK127881 AB081509 BC103929 BC113973	-147689	+	NM_032270 TSC_hg19_v1_chr1_+_90098643	-147808	+	TSC_hg19_v1_chr1_+_90098630 BC036122	-147820	+	TSC_hg19_v1_chr1_+_90286586 NM_001134479	40074	+	TSC_hg19_v1_chr1_+_90286603 AK092238 AX747423	40146	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	41005	+	AK127881|LRRC8C|84230|leucine rich repeat containing 8 family, member C##AB081509|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC103929|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC113973|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_032270|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC036122|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_001134479|LRRC8D|55144|leucine rich repeat containing 8 family, member D##AK092238|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D	0.999664	0.653151	denovo_WM_7:22:0.849	CTCF.p2:-52:0.653
chr1	247368565	247368673	reg1003765.p1	6.802	+	BC032514 BC096349 BC096350 BC096351 BC099661 BC013605 AK054647 NM_001243740 NM_003431	-33335	-	TSC_hg19_v1_chr1_-_247275541 AK127619 NM_207401	-92997	-	TSC_hg19_v1_chr1_-_247267631 AK022668 AX721155 AK056020 AX721139 BC015312 NM_001142572 NM_024804	-100958	-	BC126341 BC126367 NM_173858	50704	+	TSC_hg19_v1_chr1_-_247494994 BC007263 NM_032752	126398	-	AK314998 NM_001079821 NM_001127461 TSC_hg19_v1_chr1_+_247579474 AB208891	210850	+	BC032514|ZNF124|7678|zinc finger protein 124##BC096349|ZNF124|7678|zinc finger protein 124##BC096350|ZNF124|7678|zinc finger protein 124##BC096351|ZNF124|7678|zinc finger protein 124##BC099661|ZNF124|7678|zinc finger protein 124##BC013605|ZNF124|7678|zinc finger protein 124##AK054647|ZNF124|7678|zinc finger protein 124##NM_001243740|ZNF124|7678|zinc finger protein 124##NM_003431|ZNF124|7678|zinc finger protein 124##AK127619|C1orf229|388759|chromosome 1 open reading frame 229##NM_207401|C1orf229|388759|chromosome 1 open reading frame 229##AK022668|ZNF669|79862|zinc finger protein 669##AK056020|ZNF669|79862|zinc finger protein 669##BC015312|ZNF669|79862|zinc finger protein 669##NM_001142572|ZNF669|79862|zinc finger protein 669##NM_024804|ZNF669|79862|zinc finger protein 669##BC126341|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC126367|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##NM_173858|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC007263|ZNF496|84838|zinc finger protein 496##NM_032752|ZNF496|84838|zinc finger protein 496##AK314998|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001079821|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127461|NLRP3|114548|NLR family, pyrin domain containing 3##AB208891|NLRP3|114548|NLR family, pyrin domain containing 3	0.994344	0.0	
chr17	18958828	18958996	reg1005460.p2	6.802	+	BT019981 CR541941 CR541966 AB528891 CU687638 BC035856 U52518 BC063035 NM_006613	-8626	-	TSC_hg19_v1_chr17_-_18908078 NM_001039999	-50833	-	AK057946 NM_001042450 NM_152351 AK298345 BC062617 BC034380	-103408	+	BC157869 NM_001129778	71869	+	TSC_hg19_v1_chr17_+_19140720 NM_001102664 NM_014964 NM_148921 AK092366 AK024115 AB028988 BC070036 AK295652 AK298006 AK307455 BC015488	181796	+	CU678304 TSC_hg19_v1_chr17_-_19265911 BC002944 AK293815 AB030506 AK297782 NM_001243473 NM_015681	307057	-	BT019981|GRAP|10750|GRB2-related adaptor protein##CR541941|GRAP|10750|GRB2-related adaptor protein##CR541966|GRAP|10750|GRB2-related adaptor protein##BC035856|GRAP|10750|GRB2-related adaptor protein##U52518|GRAP|10750|GRB2-related adaptor protein##BC063035|GRAP|10750|GRB2-related adaptor protein##NM_006613|GRAP|10750|GRB2-related adaptor protein##NM_001039999|FAM83G|644815|family with sequence similarity 83, member G##AK057946|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001042450|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_152351|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##AK298345|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC062617|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC034380|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC157869|GRAPL|400581|GRB2-related adaptor protein-like##NM_001129778|GRAPL|400581|GRB2-related adaptor protein-like##NM_001102664|EPN2|22905|epsin 2##NM_014964|EPN2|22905|epsin 2##NM_148921|EPN2|22905|epsin 2##AK092366|EPN2|22905|epsin 2##AK024115|EPN2|22905|epsin 2##AB028988|EPN2|22905|epsin 2##BC070036|EPN2|22905|epsin 2##AK295652|EPN2|22905|epsin 2##AK298006|EPN2|22905|epsin 2##AK307455|EPN2|22905|epsin 2##BC015488|EPN2|22905|epsin 2##BC002944|B9D1|27077|B9 protein domain 1##AK293815|B9D1|27077|B9 protein domain 1##AB030506|B9D1|27077|B9 protein domain 1##AK297782|B9D1|27077|B9 protein domain 1##NM_001243473|B9D1|27077|B9 protein domain 1##NM_015681|B9D1|27077|B9 protein domain 1	0.0	0.128176	
chr2	37772794	37772969	reg1006175.p2	6.801	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-201068	+	BC030706 BC012820 AB015982 NM_005813	-228688	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-314035	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	125898	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	126508	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	379551	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.998994	0.0	denovo_WM_7:-10:0.310	denovo_WM_7:-11:0.310	denovo_WM_7:-12:0.310
chr2	9125137	9125291	reg1005735.p2	6.801	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	-147495	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	-303011	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-2067627	+	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	18607	-	TSC_hg19_v1_chr2_+_9346906 AB007860 NM_001135191 NM_003887	221678	+	TSC_hg19_v1_chr2_+_9346940 BC063308	221745	+	BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AB007860|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##NM_001135191|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##NM_003887|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##BC063308|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	0.776921	0.0	denovo_WM_7:7:0.324	denovo_WM_7:8:0.453
chr6	167537718	167537873	reg1006046.p1	6.801	+	NM_031409 U68031 U68030	-1546	+	NM_004367	-12501	+	TSC_hg19_v1_chr6_+_167412884 NM_007045 NM_194429 Y18046 AK294950 AK289846 BX647686 AK312791 BC011902 AB590215 CU680104 DQ893037 DQ896278 AJ420472	-124942	+	BC095537 NM_005299	33521	-	NM_001145121	46285	+	AK091987 AX747293 NM_001143947 NM_018974 AJ422141 AJ508812 BC098248 BC099718 BC105635	167081	+	NM_031409|CCR6|1235|chemokine (C-C motif) receptor 6##U68031|CCR6|1235|chemokine (C-C motif) receptor 6##U68030|CCR6|1235|chemokine (C-C motif) receptor 6##NM_004367|CCR6|1235|chemokine (C-C motif) receptor 6##NM_007045|FGFR1OP|11116|FGFR1 oncogene partner##NM_194429|FGFR1OP|11116|FGFR1 oncogene partner##Y18046|FGFR1OP|11116|FGFR1 oncogene partner##AK294950|FGFR1OP|11116|FGFR1 oncogene partner##AK289846|FGFR1OP|11116|FGFR1 oncogene partner##AK312791|FGFR1OP|11116|FGFR1 oncogene partner##BC011902|FGFR1OP|11116|FGFR1 oncogene partner##DQ893037|FGFR1OP|11116|FGFR1 oncogene partner##DQ896278|FGFR1OP|11116|FGFR1 oncogene partner##AJ420472|FGFR1OP|11116|FGFR1 oncogene partner##BC095537|GPR31|2853|G protein-coupled receptor 31##NM_005299|GPR31|2853|G protein-coupled receptor 31##NM_001145121|TCP10L2|401285|t-complex 10-like 2 (mouse)##AK091987|UNC93A|54346|unc-93 homolog A (C. elegans)##NM_001143947|UNC93A|54346|unc-93 homolog A (C. elegans)##NM_018974|UNC93A|54346|unc-93 homolog A (C. elegans)##AJ422141|UNC93A|54346|unc-93 homolog A (C. elegans)##AJ508812|UNC93A|54346|unc-93 homolog A (C. elegans)##BC098248|UNC93A|54346|unc-93 homolog A (C. elegans)##BC099718|UNC93A|54346|unc-93 homolog A (C. elegans)##BC105635|UNC93A|54346|unc-93 homolog A (C. elegans)	1.999229	0.0	denovo_WM_7:17:0.871	denovo_WM_7:-34:0.819
chr7	34436130	34436277	reg1004034.p1	6.801	+	AK289963 NM_133468 AK096150 BC060868	-491061	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-1267122	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-1287226	-	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	261716	+	DQ287932 NM_015283	641449	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	789589	-	AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)	0.309447	0.0	denovo_WM_7:-65:0.250
chr21	15918646	15918816	reg1006113.p1	6.800	+	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	-82	-	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-163258	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-330234	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	518486	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	1183594	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	1183810	+	BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25	0.020844	0.0	
chr10	34736377	34736529	reg1003130.p1	6.799	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-1112455	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-1112639	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-1113000	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	367698	-	AK310225 AK300491 NM_001198778 NM_001198779	626759	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	642819	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	1.994489	0.0	
chr1	3781540	3781687	reg1005080.p1	6.799	+	BC048797 NM_004402	-7769	+	TSC_hg19_v1_chr1_-_3773776 BC001640 BC047450 BC026020 BC050721 NM_014704	-7829	-	TSC_hg19_v1_chr1_-_3773757 AB011134 AK308191	-7925	-	TSC_hg19_v1_chr1_-_3816816 CU688284 BC035643 BC047611	35150	-	TSC_hg19_v1_chr1_-_3816823 BC067302 AK125092 AK289493 NM_207356	35232	-	TSC_hg19_v1_chr1_+_4714668 AF175409	933116	+	BC048797|DFFB|1677|DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)##NM_004402|DFFB|1677|DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)##BC001640|CEP104|9731|centrosomal protein 104kDa##BC047450|CEP104|9731|centrosomal protein 104kDa##BC026020|CEP104|9731|centrosomal protein 104kDa##BC050721|CEP104|9731|centrosomal protein 104kDa##NM_014704|CEP104|9731|centrosomal protein 104kDa##AB011134|CEP104|9731|centrosomal protein 104kDa##AK308191|CEP104|9731|centrosomal protein 104kDa##BC035643|C1orf174|339448|chromosome 1 open reading frame 174##BC047611|C1orf174|339448|chromosome 1 open reading frame 174##BC067302|C1orf174|339448|chromosome 1 open reading frame 174##AK125092|C1orf174|339448|chromosome 1 open reading frame 174##AK289493|C1orf174|339448|chromosome 1 open reading frame 174##NM_207356|C1orf174|339448|chromosome 1 open reading frame 174##AF175409|AJAP1|55966|adherens junctions associated protein 1	0.027598	0.0	
chr15	61091069	61091189	reg1004844.p1	6.799	+	U04899 U04898 NM_002943 NM_134260	-171444	-	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	-206450	-	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	-319855	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	430295	-	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	430368	-	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	1261485	-	U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)	0.99951	0.0	denovo_WM_7:13:0.425	denovo_WM_7:14:0.425
chr17	39805130	39805304	reg1005585.p2	6.799	+	AB528302 DQ891101 DQ894283 BC072018 BC072019 BC011901 X62571 BC000159 BC056421 AK304373 AK095342 NM_000422	-24396	-	S79867 DQ891307 DQ896818 AF061812 BC039169 AK290853 AK309296 AK309278 NM_005557	-36209	-	BT007186 AB527765 DQ890733 DQ892997 DQ893905 BC042437 BC002690 BC019097 BC094830 AK309280 NM_000526	-62102	-	NM_005801 TSC_hg19_v1_chr17_+_39845138 AL050005 AK311862	39916	+	AK311209 TSC_hg19_v1_chr17_+_39845141	39924	+	TSC_hg19_v1_chr17_+_39845142 BC005118 L26247 AF083441 BC008710 AF100737 AJ012375 DQ896700 EU176404 BT006645 CR457051	39999	+	DQ891101|KRT17|3872|keratin 17##DQ894283|KRT17|3872|keratin 17##BC072018|KRT17|3872|keratin 17##BC072019|KRT17|3872|keratin 17##BC011901|KRT17|3872|keratin 17##X62571|KRT17|3872|keratin 17##BC000159|KRT17|3872|keratin 17##BC056421|KRT17|3872|keratin 17##AK304373|KRT17|3872|keratin 17##AK095342|KRT17|3872|keratin 17##NM_000422|KRT17|3872|keratin 17##S79867|KRT16|3868|keratin 16##DQ891307|KRT16|3868|keratin 16##DQ896818|KRT16|3868|keratin 16##AF061812|KRT16|3868|keratin 16##BC039169|KRT16|3868|keratin 16##AK290853|KRT16|3868|keratin 16##NM_005557|KRT16|3868|keratin 16##BT007186|KRT14|3861|keratin 14##DQ890733|KRT14|3861|keratin 14##DQ892997|KRT14|3861|keratin 14##DQ893905|KRT14|3861|keratin 14##BC042437|KRT14|3861|keratin 14##BC002690|KRT14|3861|keratin 14##BC019097|KRT14|3861|keratin 14##BC094830|KRT14|3861|keratin 14##NM_000526|KRT14|3861|keratin 14##NM_005801|EIF1|10209|eukaryotic translation initiation factor 1##AL050005|EIF1|10209|eukaryotic translation initiation factor 1##AK311862|EIF1|10209|eukaryotic translation initiation factor 1##AK311209|EIF1|10209|eukaryotic translation initiation factor 1##BC005118|EIF1|10209|eukaryotic translation initiation factor 1##L26247|EIF1|10209|eukaryotic translation initiation factor 1##AF083441|EIF1|10209|eukaryotic translation initiation factor 1##BC008710|EIF1|10209|eukaryotic translation initiation factor 1##AF100737|EIF1|10209|eukaryotic translation initiation factor 1##AJ012375|EIF1|10209|eukaryotic translation initiation factor 1##DQ896700|EIF1|10209|eukaryotic translation initiation factor 1##EU176404|EIF1|10209|eukaryotic translation initiation factor 1##BT006645|EIF1|10209|eukaryotic translation initiation factor 1##CR457051|EIF1|10209|eukaryotic translation initiation factor 1	1.261736	0.0	denovo_WM_7:85:0.267	denovo_WM_7:93:0.253	denovo_WM_7:101:0.429
chr7	23041435	23041615	reg1005887.p1	6.798	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-179082	-	TSC_hg19_v1_chr7_+_22767104 X04403	-274407	+	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	-274702	+	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	12170	-	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	12225	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	103847	+	CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)	0.846136	0.0	denovo_WM_7:-4:0.661
chr16	15071013	15071172	reg1005616.p1	6.797	+	AY203955 TSC_hg19_v1_chr16_+_15069016 DQ111782	-2060	+	AK299111 BC060871 TSC_hg19_v1_chr16_+_15068985	-2107	+	BX648066 TSC_hg19_v1_chr16_+_15068982	-2109	+	CU675948 AF092440 BC017336 NM_173474 AK300557 TSC_hg19_v1_chr16_-_15149897	78785	-	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	117036	-	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	418509	+	AY203955|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ111782|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##AK299111|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##BC060871|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##BX648066|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##AF092440|NTAN1|123803|N-terminal asparagine amidase##BC017336|NTAN1|123803|N-terminal asparagine amidase##NM_173474|NTAN1|123803|N-terminal asparagine amidase##AK300557|NTAN1|123803|N-terminal asparagine amidase##AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like	1.842115	0.0	denovo_WM_7:39:0.344	denovo_WM_7:40:0.228	denovo_WM_7:54:0.398	denovo_WM_7:55:0.201
chr20	52696214	52696378	reg1006282.p1	6.797	+	AK315220 NM_003657	-8993	-	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	-9234	-	TSC_hg19_v1_chr20_-_52210810 AK290350	-485497	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	94224	-	TSC_hg19_v1_chr20_+_52824396 NM_002623	128151	+	TSC_hg19_v1_chr20_+_52824630 AK312059 BC010953 U41816	128341	+	AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK290350|ZNF217|7764|zinc finger protein 217##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_002623|PFDN4|5203|prefoldin subunit 4##AK312059|PFDN4|5203|prefoldin subunit 4##BC010953|PFDN4|5203|prefoldin subunit 4##U41816|PFDN4|5203|prefoldin subunit 4	1.988548	0.0	denovo_WM_7:-46:0.405	denovo_WM_7:-47:0.399	denovo_WM_7:-63:0.924
chr7	101499945	101500051	reg1005939.p1	6.797	+	M74099 NM_181552	-39117	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-40789	+	BC002778 NM_138403	-227423	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	428399	+	TSC_hg19_v1_chr7_+_101928431 AB000520	428445	+	NM_001146210	496890	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.0	0.0	
chr4	124318949	124319043	reg1003722.p1	6.796	+	TSC_hg19_v1_chr4_+_124317949 AY192146 NM_199327	-1040	+	TSC_hg19_v1_chr4_+_123844255 NM_145207 AF361489 AL832175 AF479656 AK091384 AX746949 BC048217 AM392939 AM393832	-474744	+	AF019632 AK294450 NM_198041	-474856	-	AK026960 BC063856 NM_005841	1677	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	1314818	-	NM_024582	1918570	+	AY192146|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_199327|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_145207|SPATA5|166378|spermatogenesis associated 5##AF361489|SPATA5|166378|spermatogenesis associated 5##AL832175|SPATA5|166378|spermatogenesis associated 5##AF479656|SPATA5|166378|spermatogenesis associated 5##AK091384|SPATA5|166378|spermatogenesis associated 5##BC048217|SPATA5|166378|spermatogenesis associated 5##AM392939|SPATA5|166378|spermatogenesis associated 5##AM393832|SPATA5|166378|spermatogenesis associated 5##AF019632|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##AK294450|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##NM_198041|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)	0.998671	0.027026	denovo_WM_7:0:0.290	denovo_WM_7:0:0.290	denovo_WM_7:1:0.290
chr6	46344413	46344538	reg1005982.p1	6.796	+	NM_005822	-50847	-	D83407 TSC_hg19_v1_chr6_-_46293410 BC038509	-51068	-	CU691584 DQ891658 DQ894845 AK312392 TSC_hg19_v1_chr6_-_46293389	-51172	-	TSC_hg19_v1_chr6_-_46459031 AY034086 AK090990 AX746721 NM_001251974	114559	-	AY034085 NM_001251973	115281	-	AK307986 CU679677 DQ892889 EU176719 AF237982 AK301604 BC034323 BC012548 AK292263 BC010358 NM_016593	275900	-	NM_005822|RCAN2|10231|regulator of calcineurin 2##D83407|RCAN2|10231|regulator of calcineurin 2##BC038509|RCAN2|10231|regulator of calcineurin 2##DQ891658|RCAN2|10231|regulator of calcineurin 2##DQ894845|RCAN2|10231|regulator of calcineurin 2##AK312392|RCAN2|10231|regulator of calcineurin 2##AY034086|RCAN2|10231|regulator of calcineurin 2##AK090990|RCAN2|10231|regulator of calcineurin 2##NM_001251974|RCAN2|10231|regulator of calcineurin 2##AY034085|RCAN2|10231|regulator of calcineurin 2##NM_001251973|RCAN2|10231|regulator of calcineurin 2##AK307986|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##DQ892889|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##EU176719|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##AF237982|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##AK301604|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##BC034323|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##BC012548|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##AK292263|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##BC010358|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1##NM_016593|CYP39A1|51302|cytochrome P450, family 39, subfamily A, polypeptide 1	1.016777	0.0	denovo_WM_7:-18:0.249	denovo_WM_7:-19:0.707
chr10	5887128	5887296	reg1004948.p1	6.795	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-31777	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-31946	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-114540	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	44644	-	TSC_hg19_v1_chr10_+_5932205 AK095343	44987	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	44999	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.998702	0.0	denovo_WM_7:46:0.450	denovo_WM_7:47:0.450
chr1	156198054	156198234	reg1006323.p2	6.795	+	TSC_hg19_v1_chr1_+_156182797 NM_001199653 NM_001199654 NM_001199661 NM_001199662 NM_001199663 NM_001199664 NM_007221 AK124646 AK307287 AK022523 AK289490 AK290260 AK310694 BC033656 BC065031 AB464036 CU688008 DQ890582 DQ893741 EU832507 EU832588 AL080101 BC056417 AF141310 BC050735	-15350	+	TSC_hg19_v1_chr1_+_156163911 AB007915 BC039854	-34226	+	TSC_hg19_v1_chr1_+_156163907 AK074912 AK299747 AK307968 AK309678 AK309690 BC008843 AK075002 AK294524 AK293778	-34252	+	BC113432 BC113434 NM_199173 X51699 X53698 HQ258037	13840	+	AK294143 BC058509 NM_198406 AF455047 AF455045 AY424284 TSC_hg19_v1_chr1_-_156217848 AK095197 NM_024897 AK095143 AF455046 AK054682 AK094346 AK316034 AK295915 AK295916	19646	-	AY336728 AB384108 AY168922 AB085691 TSC_hg19_v1_chr1_-_156252597 AK092183 AX747396	54391	-	NM_001199653|PMF1|11243|polyamine-modulated factor 1##NM_001199654|PMF1|11243|polyamine-modulated factor 1##NM_001199661|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199662|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199663|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199664|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_007221|PMF1|11243|polyamine-modulated factor 1##AK124646|PMF1|11243|polyamine-modulated factor 1##AK307287|PMF1|11243|polyamine-modulated factor 1##AK022523|PMF1|11243|polyamine-modulated factor 1##AK289490|PMF1|11243|polyamine-modulated factor 1##AK290260|PMF1|11243|polyamine-modulated factor 1##AK310694|PMF1|11243|polyamine-modulated factor 1##BC033656|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##BC065031|PMF1|11243|polyamine-modulated factor 1##DQ890582|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##DQ893741|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##EU832507|PMF1|11243|polyamine-modulated factor 1##EU832588|PMF1|11243|polyamine-modulated factor 1##AL080101|PMF1|11243|polyamine-modulated factor 1##BC056417|PMF1|11243|polyamine-modulated factor 1##AF141310|PMF1|11243|polyamine-modulated factor 1##BC050735|PMF1|11243|polyamine-modulated factor 1##AB007915|SLC25A44|9673|solute carrier family 25, member 44##BC039854|SLC25A44|9673|solute carrier family 25, member 44##AK074912|SLC25A44|9673|solute carrier family 25, member 44##AK299747|SLC25A44|9673|solute carrier family 25, member 44##AK307968|SLC25A44|9673|solute carrier family 25, member 44##AK309678|SLC25A44|9673|solute carrier family 25, member 44##AK309690|SLC25A44|9673|solute carrier family 25, member 44##BC008843|SLC25A44|9673|solute carrier family 25, member 44##AK075002|SLC25A44|9673|solute carrier family 25, member 44##AK294524|SLC25A44|9673|solute carrier family 25, member 44##BC113432|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##BC113434|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##NM_199173|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##X51699|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##X53698|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##HQ258037|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##AK294143|PAQR6|79957|progestin and adipoQ receptor family member VI##BC058509|PAQR6|79957|progestin and adipoQ receptor family member VI##NM_198406|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455047|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455045|PAQR6|79957|progestin and adipoQ receptor family member VI##AY424284|PAQR6|79957|progestin and adipoQ receptor family member VI##AK095197|PAQR6|79957|progestin and adipoQ receptor family member VI##NM_024897|PAQR6|79957|progestin and adipoQ receptor family member VI##AK095143|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455046|PAQR6|79957|progestin and adipoQ receptor family member VI##AK054682|PAQR6|79957|progestin and adipoQ receptor family member VI##AK094346|PAQR6|79957|progestin and adipoQ receptor family member VI##AK316034|PAQR6|79957|progestin and adipoQ receptor family member VI##AK295915|PAQR6|79957|progestin and adipoQ receptor family member VI##AK295916|PAQR6|79957|progestin and adipoQ receptor family member VI##AY336728|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY168922|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB085691|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK092183|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	1.99662	0.0	denovo_WM_7:-71:0.447	denovo_WM_7:-72:0.299	denovo_WM_7:-87:0.321	denovo_WM_7:-88:0.469
chr15	81316212	81316392	reg1004626.p2	6.794	+	TSC_hg19_v1_chr15_+_81293344 NM_022566	-22958	+	D42039 TSC_hg19_v1_chr15_-_81282157 AK301416 AK026606 BC009210 BC012746 AY359110 NM_015154	-34102	-	TSC_hg19_v1_chr15_+_81071711 AB103330 AK000465 AY581148 AY581149 AY585237 NM_018689 BC020256	-244581	+	AK302120 BC062471 NM_173528 AK307565	110325	+	AK124725 NM_001172128 AK124565 AK131530	172916	+	NM_172217 AY324389	201387	+	NM_022566|MESDC1|59274|mesoderm development candidate 1##D42039|MESDC2|23184|mesoderm development candidate 2##AK026606|MESDC2|23184|mesoderm development candidate 2##BC009210|MESDC2|23184|mesoderm development candidate 2##BC012746|MESDC2|23184|mesoderm development candidate 2##AY359110|MESDC2|23184|mesoderm development candidate 2##NM_015154|MESDC2|23184|mesoderm development candidate 2##AB103330|KIAA1199|57214|KIAA1199##AK000465|KIAA1199|57214|KIAA1199##AY581148|KIAA1199|57214|KIAA1199##AY581149|KIAA1199|57214|KIAA1199##NM_018689|KIAA1199|57214|KIAA1199##BC020256|KIAA1199|57214|KIAA1199##AK302120|C15orf26|161502|chromosome 15 open reading frame 26##BC062471|C15orf26|161502|chromosome 15 open reading frame 26##NM_173528|C15orf26|161502|chromosome 15 open reading frame 26##AK307565|C15orf26|161502|chromosome 15 open reading frame 26##AK124725|IL16|3603|interleukin 16##NM_001172128|IL16|3603|interleukin 16##AK124565|IL16|3603|interleukin 16##AK131530|IL16|3603|interleukin 16##NM_172217|IL16|3603|interleukin 16##AY324389|IL16|3603|interleukin 16	0.0	0.0	
chr17	60626797	60626923	reg1004921.p2	6.791	+	TSC_hg19_v1_chr17_+_60556483 NM_001112707 NM_006852 BC044925 AF162667 AX775745 AX775747	-70265	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	-125597	+	AK098684 NM_173503 BC101752 BC101778	-168934	+	TSC_hg19_v1_chr17_+_60704751 AB014609 BC153884 NM_006039	77897	+	BC146647 TSC_hg19_v1_chr17_+_60705048 AF134838	78185	+	TSC_hg19_v1_chr17_+_60705060 BC150212 AF107292 AB384513	78247	+	NM_001112707|TLK2|11011|tousled-like kinase 2##NM_006852|TLK2|11011|tousled-like kinase 2##BC044925|TLK2|11011|tousled-like kinase 2##AF162667|TLK2|11011|tousled-like kinase 2##NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##AB014609|MRC2|9902|mannose receptor, C type 2##BC153884|MRC2|9902|mannose receptor, C type 2##NM_006039|MRC2|9902|mannose receptor, C type 2##BC146647|MRC2|9902|mannose receptor, C type 2##AF134838|MRC2|9902|mannose receptor, C type 2##BC150212|MRC2|9902|mannose receptor, C type 2##AF107292|MRC2|9902|mannose receptor, C type 2	2.045162	0.0	denovo_WM_7:-92:0.210
chr4	57741410	57741587	reg1005334.p2	6.791	+	CR542135 DQ895533 EU176199 TSC_hg19_v1_chr4_-_57687883 AK312222 NM_021114 X57655 BC022514 GU727622	-53633	-	AF492675 NM_001145460 NM_032495 NM_139212	-193640	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	-218920	-	TSC_hg19_v1_chr4_+_57774035 NM_005612	32557	+	TSC_hg19_v1_chr4_+_57774090 BC038985 U13879 U22680	32665	+	BC132859 BC136491 TSC_hg19_v1_chr4_+_57774509	32939	+	CR542135|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##DQ895533|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##EU176199|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AK312222|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_021114|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##X57655|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##BC022514|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##GU727622|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##NM_005612|REST|5978|RE1-silencing transcription factor##BC038985|REST|5978|RE1-silencing transcription factor##U13879|REST|5978|RE1-silencing transcription factor##BC132859|REST|5978|RE1-silencing transcription factor##BC136491|REST|5978|RE1-silencing transcription factor	1.29313	0.0	denovo_WM_7:32:0.260	denovo_WM_7:47:0.259
chr5	179989754	179989863	reg1005727.p1	6.789	+	TSC_hg19_v1_chr5_+_179921452 AB033020 BC152469	-68350	+	TSC_hg19_v1_chr5_+_179921385 NM_015455	-68415	+	AB016789 NM_005110 BC000012 TSC_hg19_v1_chr5_-_179780333 AK022507 AK314551	-209483	-	AB590701 AF313458 BC029176 AF086152 AF436839 AY040564 BC072673 NM_052863 AY359064	28694	-	EU826564 EU826565 EU826566 X68203 AY233382 AY233383 X69878 TSC_hg19_v1_chr5_-_180076569	86748	-	TSC_hg19_v1_chr5_-_180076572 U43143	86765	-	AB033020|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##BC152469|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##NM_015455|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##AB016789|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_005110|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##BC000012|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK022507|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK314551|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AF313458|SCGB3A1|92304|secretoglobin, family 3A, member 1##BC029176|SCGB3A1|92304|secretoglobin, family 3A, member 1##AF086152|SCGB3A1|92304|secretoglobin, family 3A, member 1##AF436839|SCGB3A1|92304|secretoglobin, family 3A, member 1##AY040564|SCGB3A1|92304|secretoglobin, family 3A, member 1##BC072673|SCGB3A1|92304|secretoglobin, family 3A, member 1##NM_052863|SCGB3A1|92304|secretoglobin, family 3A, member 1##AY359064|SCGB3A1|92304|secretoglobin, family 3A, member 1##EU826564|FLT4|2324|fms-related tyrosine kinase 4##EU826565|FLT4|2324|fms-related tyrosine kinase 4##EU826566|FLT4|2324|fms-related tyrosine kinase 4##X68203|FLT4|2324|fms-related tyrosine kinase 4##AY233382|FLT4|2324|fms-related tyrosine kinase 4##AY233383|FLT4|2324|fms-related tyrosine kinase 4##X69878|FLT4|2324|fms-related tyrosine kinase 4##U43143|FLT4|2324|fms-related tyrosine kinase 4	0.918317	0.0	denovo_WM_7:-58:0.410	denovo_WM_7:-61:0.286
chr8	11154978	11155158	reg1006218.p1	6.789	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	-12713	+	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	-13056	+	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	-96203	-	AJ291677 NM_054028 BC131696	33442	+	BC038546 TSC_hg19_v1_chr8_-_11205010	49936	-	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	169161	-	AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A	0.996302	0.0	denovo_WM_7:-19:0.687
chr1	34368806	34368959	reg1004256.p1	6.786	+	AK097707 NM_145205	-42807	+	NM_145238 AK131405 TSC_hg19_v1_chr1_+_33938251 AK290195 BC008827 BC011404	-430631	+	TSC_hg19_v1_chr1_-_33896604 AJ242730	-472274	-	TSC_hg19_v1_chr1_-_34630856 AB212622	261983	-	AY210418 NM_052896	262560	-	AK123355 NM_032884 BC007637	263717	+	AK097707|HMGB4|127540|high mobility group box 4##NM_145205|HMGB4|127540|high mobility group box 4##NM_145238|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK131405|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK290195|ZSCAN20|7579|zinc finger and SCAN domain containing 20##BC008827|ZSCAN20|7579|zinc finger and SCAN domain containing 20##BC011404|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AJ242730|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##AB212622|CSMD2|114784|CUB and Sushi multiple domains 2##AY210418|CSMD2|114784|CUB and Sushi multiple domains 2##NM_052896|CSMD2|114784|CUB and Sushi multiple domains 2##AK123355|C1orf94|84970|chromosome 1 open reading frame 94##NM_032884|C1orf94|84970|chromosome 1 open reading frame 94##BC007637|C1orf94|84970|chromosome 1 open reading frame 94	1.516569	0.0	denovo_WM_7:-32:0.374	denovo_WM_7:60:0.527	denovo_WM_7:61:0.470
chr9	6619124	6619270	reg1004459.p1	6.785	+	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-205792	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-206000	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	-206053	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	26430	-	AK310439 NM_001146696	101665	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	138470	+	AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C	1.973519	0.0	denovo_WM_7:-26:0.247	denovo_WM_7:-27:0.665	denovo_WM_7:-42:0.813
chr4	41068121	41068271	reg1005962.p2	6.784	+	BC088372 TSC_hg19_v1_chr4_-_40936716	-131518	-	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	-209021	-	BC042401 NM_024677 BC036568 AK024063	-316250	+	TSC_hg19_v1_chr4_-_41216560 BC027946 AK304247 AK226179 NM_001166050 NM_004307 NM_173075	148373	-	TSC_hg19_v1_chr4_+_41258897 NM_004181	190700	+	TSC_hg19_v1_chr4_+_41258913 BC000332 BC018838	190722	+	BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##BC027946|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK304247|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK226179|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166050|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004307|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_173075|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004181|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC000332|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC018838|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	1.006459	0.0	denovo_WM_7:-35:0.315	denovo_WM_7:-36:0.483
chr19	48922660	48922807	reg1006297.p2	6.782	+	NM_000836 U77783	-24602	+	X55885 TSC_hg19_v1_chr19_-_48894809 BC008958 AB097047 BC018778 NM_006801 AK312647	-27935	-	CU676330 DQ891992 DQ895182 TSC_hg19_v1_chr19_-_48894672	-28089	-	NM_031485 TSC_hg19_v1_chr19_+_48949078 AK074676 AK300225	26334	+	TSC_hg19_v1_chr19_+_48949239 AK131055 AK315625	26495	+	TSC_hg19_v1_chr19_+_48949248 AF337808 BC002440 EF011614 AL713729 CU677962 DQ892630 DQ895868 AB075822 BC036281 BC047351	26526	+	NM_000836|GRIN2D|2906|glutamate receptor, ionotropic, N-methyl D-aspartate 2D##U77783|GRIN2D|2906|glutamate receptor, ionotropic, N-methyl D-aspartate 2D##X55885|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##BC008958|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##AB097047|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##BC018778|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##NM_006801|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##AK312647|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##DQ891992|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##DQ895182|KDELR1|10945|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1##NM_031485|GRWD1|83743|glutamate-rich WD repeat containing 1##AK074676|GRWD1|83743|glutamate-rich WD repeat containing 1##AK300225|GRWD1|83743|glutamate-rich WD repeat containing 1##AK131055|GRWD1|83743|glutamate-rich WD repeat containing 1##AK315625|GRWD1|83743|glutamate-rich WD repeat containing 1##AF337808|GRWD1|83743|glutamate-rich WD repeat containing 1##BC002440|GRWD1|83743|glutamate-rich WD repeat containing 1##EF011614|GRWD1|83743|glutamate-rich WD repeat containing 1##AL713729|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ892630|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ895868|GRWD1|83743|glutamate-rich WD repeat containing 1##BC036281|GRWD1|83743|glutamate-rich WD repeat containing 1##BC047351|GRWD1|83743|glutamate-rich WD repeat containing 1	0.996969	0.0	denovo_WM_7:45:0.552	denovo_WM_7:46:0.206
chr13	26760797	26760901	reg1004639.p1	6.781	+	BC132898 BC137092 AY358775 NM_001007538	-135669	-	AK302980 TSC_hg19_v1_chr13_+_26042965	-717884	+	TSC_hg19_v1_chr13_+_26042926 AK126031	-717920	+	AL133621 TSC_hg19_v1_chr13_-_26789203	28286	-	TSC_hg19_v1_chr13_-_26795853 AY009109 NM_183044	35008	-	BC034688 TSC_hg19_v1_chr13_-_26795942 AK293272 AJ010347 NM_183043	35128	-	BC132898|SHISA2|387914|shisa homolog 2 (Xenopus laevis)##BC137092|SHISA2|387914|shisa homolog 2 (Xenopus laevis)##AY358775|SHISA2|387914|shisa homolog 2 (Xenopus laevis)##NM_001007538|SHISA2|387914|shisa homolog 2 (Xenopus laevis)##AK302980|ATP8A2|51761|ATPase, aminophospholipid transporter, class I, type 8A, member 2##AK126031|ATP8A2|51761|ATPase, aminophospholipid transporter, class I, type 8A, member 2##AL133621|RNF6|6049|ring finger protein (C3H2C3 type) 6##AY009109|RNF6|6049|ring finger protein (C3H2C3 type) 6##NM_183044|RNF6|6049|ring finger protein (C3H2C3 type) 6##BC034688|RNF6|6049|ring finger protein (C3H2C3 type) 6##AK293272|RNF6|6049|ring finger protein (C3H2C3 type) 6##AJ010347|RNF6|6049|ring finger protein (C3H2C3 type) 6##NM_183043|RNF6|6049|ring finger protein (C3H2C3 type) 6	0.997621	0.0	denovo_WM_7:71:0.398
chr14	102771639	102771774	reg1005976.p2	6.781	+	TSC_hg19_v1_chr14_-_102771492 AK094747 BC053536 BC026069 AK302349 AK312778 AB022694 NM_014226	-207	-	TSC_hg19_v1_chr14_+_102606250 NM_001242414 NM_001242415 NM_001242416 NM_001242417 NM_001242418 NM_144574 NM_181291 NM_181308 BC030654 AK090580 AK225852 BC028387 AK090978 AX746714 AK297727 AL832242 AL832500 CU688486 DQ891530 DQ894719 EU831767 EU831845 AF327354 BX248274	-165496	+	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	-165667	-	AK093342 AX748064 TSC_hg19_v1_chr14_+_102783841	12071	+	TSC_hg19_v1_chr14_+_102786095 BX248266 NM_018335	14388	+	NM_001177611 AF228148 TSC_hg19_v1_chr14_-_102829228 AF228149 BC000600 AK056112 NM_001177612 NM_032630	57446	-	AK094747|MOK|5891|MOK protein kinase##BC053536|MOK|5891|MOK protein kinase##BC026069|MOK|5891|MOK protein kinase##AK302349|MOK|5891|MOK protein kinase##AK312778|MOK|5891|MOK protein kinase##AB022694|MOK|5891|MOK protein kinase##NM_014226|MOK|5891|MOK protein kinase##NM_001242414|WDR20|91833|WD repeat domain 20##NM_001242415|WDR20|91833|WD repeat domain 20##NM_001242416|WDR20|91833|WD repeat domain 20##NM_001242417|WDR20|91833|WD repeat domain 20##NM_001242418|WDR20|91833|WD repeat domain 20##NM_144574|WDR20|91833|WD repeat domain 20##NM_181291|WDR20|91833|WD repeat domain 20##NM_181308|WDR20|91833|WD repeat domain 20##BC030654|WDR20|91833|WD repeat domain 20##AK090580|WDR20|91833|WD repeat domain 20##AK225852|WDR20|91833|WD repeat domain 20##BC028387|WDR20|91833|WD repeat domain 20##AK090978|WDR20|91833|WD repeat domain 20##AK297727|WDR20|91833|WD repeat domain 20##AL832242|WDR20|91833|WD repeat domain 20##AL832500|WDR20|91833|WD repeat domain 20##DQ891530|WDR20|91833|WD repeat domain 20##DQ894719|WDR20|91833|WD repeat domain 20##EU831767|WDR20|91833|WD repeat domain 20##EU831845|WDR20|91833|WD repeat domain 20##AF327354|WDR20|91833|WD repeat domain 20##BX248274|WDR20|91833|WD repeat domain 20##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK093342|ZNF839|55778|zinc finger protein 839##BX248266|ZNF839|55778|zinc finger protein 839##NM_018335|ZNF839|55778|zinc finger protein 839##NM_001177611|CINP|51550|cyclin-dependent kinase 2 interacting protein##AF228148|CINP|51550|cyclin-dependent kinase 2 interacting protein##AF228149|CINP|51550|cyclin-dependent kinase 2 interacting protein##BC000600|CINP|51550|cyclin-dependent kinase 2 interacting protein##AK056112|CINP|51550|cyclin-dependent kinase 2 interacting protein##NM_001177612|CINP|51550|cyclin-dependent kinase 2 interacting protein##NM_032630|CINP|51550|cyclin-dependent kinase 2 interacting protein	0.99718	0.0	denovo_WM_7:62:0.976
chr19	10346903	10347083	reg1004842.p1	6.781	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-4987	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-41266	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-41388	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	15654	+	TSC_hg19_v1_chr19_+_10362889 BC009858	15905	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	15999	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chr19	47805546	47805726	reg1003908.p1	6.781	+	TSC_hg19_v1_chr19_+_47778141 BC022076 BC045749 NM_178511 BC064510	-27500	+	TSC_hg19_v1_chr19_+_47759811 BC002787 BC009743	-45818	+	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	-45875	+	BC008982 NM_001736 TSC_hg19_v1_chr19_+_47813117 M62505	7466	+	AB038237 NM_018485	34734	+	NM_014681 TSC_hg19_v1_chr19_+_47852571 AK304710	46933	+	BC022076|PRR24|255783|proline rich 24##BC045749|PRR24|255783|proline rich 24##NM_178511|PRR24|255783|proline rich 24##BC064510|PRR24|255783|proline rich 24##BC002787|CCDC9|26093|coiled-coil domain containing 9##BC009743|CCDC9|26093|coiled-coil domain containing 9##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9##BC008982|C5AR1|728|complement component 5a receptor 1##NM_001736|C5AR1|728|complement component 5a receptor 1##M62505|C5AR1|728|complement component 5a receptor 1##AB038237|GPR77|27202|G protein-coupled receptor 77##NM_018485|GPR77|27202|G protein-coupled receptor 77##NM_014681|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34##AK304710|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34	0.993913	0.0	denovo_WM_7:-69:0.981
chr2	37319179	37319359	reg1005319.p2	6.781	+	NM_174931 TSC_hg19_v1_chr2_+_37311662 AK095667 BC071798 AK289504 AK294697	-7622	+	TSC_hg19_v1_chr2_-_37311470 BC150605 NM_019024 AK093937 AX748373	-7777	-	TSC_hg19_v1_chr2_-_37311425 AK096637	-7847	-	AY302136 NM_001135652 BC143228	55688	-	TSC_hg19_v1_chr2_-_37384096 BC022314 BC057805 AK290655	64802	-	TSC_hg19_v1_chr2_-_37384151 BC040851 NM_001135651 NM_002759	64993	-	NM_174931|CCDC75|253635|coiled-coil domain containing 75##AK095667|CCDC75|253635|coiled-coil domain containing 75##BC071798|CCDC75|253635|coiled-coil domain containing 75##AK289504|CCDC75|253635|coiled-coil domain containing 75##AK294697|CCDC75|253635|coiled-coil domain containing 75##BC150605|HEATR5B|54497|HEAT repeat containing 5B##NM_019024|HEATR5B|54497|HEAT repeat containing 5B##AK096637|HEATR5B|54497|HEAT repeat containing 5B##AY302136|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135652|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC143228|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC022314|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC057805|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##AK290655|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC040851|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135651|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_002759|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2	0.0	0.0	
chr10	73132877	73133009	reg1005933.p1	6.779	+	BC063019 TSC_hg19_v1_chr10_+_73079044 AY288928	-53897	+	AX775915 AX775917 AX775919 AX775921 NM_001174098 NM_018344 TSC_hg19_v1_chr10_+_73079015 AK316152 AY358686 BC120996 BC120997 AK304503 BC050589 AK314497	-53918	+	TSC_hg19_v1_chr10_+_72972326 AK128132 NM_001244889 NM_170744 AY358351 AB096256	-160563	+	TSC_hg19_v1_chr10_+_73156683 BC011570 NM_001171930 NM_001171931 NM_001171932 NM_022124 NM_052836 BC032581 BC139903 BC108254 BC065284 BC136976 BC136977	23795	+	AK123442 BC071608 NM_001164375 TSC_hg19_v1_chr10_-_73479685	346649	-	AK074172 NM_001168390	364637	-	BC063019|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY288928|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775915|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775917|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775919|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775921|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_001174098|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_018344|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK316152|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY358686|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120996|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120997|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK304503|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC050589|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK314497|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK128132|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_001244889|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_170744|UNC5B|219699|unc-5 homolog B (C. elegans)##AY358351|UNC5B|219699|unc-5 homolog B (C. elegans)##AB096256|UNC5B|219699|unc-5 homolog B (C. elegans)##BC011570|CDH23|64072|cadherin-related 23##NM_001171930|CDH23|64072|cadherin-related 23##NM_001171931|CDH23|64072|cadherin-related 23##NM_001171932|CDH23|64072|cadherin-related 23##NM_022124|CDH23|64072|cadherin-related 23##NM_052836|CDH23|64072|cadherin-related 23##BC032581|CDH23|64072|cadherin-related 23##BC139903|CDH23|64072|cadherin-related 23##BC108254|CDH23|64072|cadherin-related 23##BC065284|CDH23|64072|cadherin-related 23##BC136976|CDH23|64072|cadherin-related 23##BC136977|CDH23|64072|cadherin-related 23##AK123442|C10orf105|414152|chromosome 10 open reading frame 105##BC071608|C10orf105|414152|chromosome 10 open reading frame 105##NM_001164375|C10orf105|414152|chromosome 10 open reading frame 105##AK074172|C10orf105|414152|chromosome 10 open reading frame 105##NM_001168390|C10orf105|414152|chromosome 10 open reading frame 105	0.0	0.0	
chr1	41633516	41633609	reg1005867.p1	6.779	+	BC021252 NM_001172221	-4874	-	BC009752 NM_001031694	-6488	-	AK301497 AK299383 NM_001172222	-7991	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	74223	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	74274	-	BC034393 X55177 M65199 NM_001956	316757	-	BC021252|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172221|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC009752|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001031694|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK301497|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK299383|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172222|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2	0.983865	0.0	denovo_WM_7:29:0.470	denovo_WM_7:30:0.470
chr17	7359213	7359393	reg1006009.p2	6.779	+	AK298938 TSC_hg19_v1_chr17_+_7348840 AK294880	-10453	+	TSC_hg19_v1_chr17_+_7348379 BC023553 NM_000747 AK308106 BC011371 X14830 DQ894641	-10899	+	BC032502 NM_004112 AB209390 AB590462 AY049782 U66199	-16490	+	TSC_hg19_v1_chr17_-_7382882 AK122971 AY302699	23550	-	AB040971 NM_001128833 TSC_hg19_v1_chr17_-_7382945	23662	-	NM_001102614	25417	+	AK298938|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##AK294880|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##BC023553|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##NM_000747|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##AK308106|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##BC011371|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##X14830|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##DQ894641|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##BC032502|FGF11|2256|fibroblast growth factor 11##NM_004112|FGF11|2256|fibroblast growth factor 11##AB209390|FGF11|2256|fibroblast growth factor 11##AY049782|FGF11|2256|fibroblast growth factor 11##U66199|FGF11|2256|fibroblast growth factor 11##AK122971|ZBTB4|57659|zinc finger and BTB domain containing 4##AY302699|ZBTB4|57659|zinc finger and BTB domain containing 4##AB040971|ZBTB4|57659|zinc finger and BTB domain containing 4##NM_001128833|ZBTB4|57659|zinc finger and BTB domain containing 4##NM_001102614|SLC35G6|643664|solute carrier family 35, member G6	1.023374	0.0	
chr9	6428456	6428634	reg1005240.p1	6.779	+	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-15140	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-15348	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	-15401	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	217082	-	AK310439 NM_001146696	292317	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	329122	+	AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C	1.994954	0.0	denovo_WM_7:19:0.202
chr12	13251032	13251205	reg1006840.p1	6.778	+	AK075311 AY358513 BC112896 AK075288 AK075322 AB593019 AB593020 BC001796 AK027894 NM_001206843 NM_001206845 NM_031289 NM_153823	-2458	-	TSC_hg19_v1_chr12_+_13197325 AK125278 NM_020853 BC039267 CR936647 HQ258331 HQ258475	-53790	+	TSC_hg19_v1_chr12_+_13197145 BC132772 BC132774	-53937	+	BC033854 AK058045 NM_001080554 NM_001080555 NM_001206842	5482	-	NM_001423 U77085 TSC_hg19_v1_chr12_+_13349659 AK310798 AK308505 BC047300	98520	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	98599	+	AK075311|GSG1|83445|germ cell associated 1##AY358513|GSG1|83445|germ cell associated 1##BC112896|GSG1|83445|germ cell associated 1##AK075288|GSG1|83445|germ cell associated 1##AK075322|GSG1|83445|germ cell associated 1##AB593019|GSG1|83445|germ cell associated 1##AB593020|GSG1|83445|germ cell associated 1##BC001796|GSG1|83445|germ cell associated 1##AK027894|GSG1|83445|germ cell associated 1##NM_001206843|GSG1|83445|germ cell associated 1##NM_001206845|GSG1|83445|germ cell associated 1##NM_031289|GSG1|83445|germ cell associated 1##NM_153823|GSG1|83445|germ cell associated 1##AK125278|KIAA1467|57613|KIAA1467##NM_020853|KIAA1467|57613|KIAA1467##BC039267|KIAA1467|57613|KIAA1467##CR936647|KIAA1467|57613|KIAA1467##BC132772|KIAA1467|57613|KIAA1467##BC132774|KIAA1467|57613|KIAA1467##BC033854|GSG1|83445|germ cell associated 1##AK058045|GSG1|83445|germ cell associated 1##NM_001080554|GSG1|83445|germ cell associated 1##NM_001080555|GSG1|83445|germ cell associated 1##NM_001206842|GSG1|83445|germ cell associated 1##NM_001423|EMP1|2012|epithelial membrane protein 1##U77085|EMP1|2012|epithelial membrane protein 1##AK310798|EMP1|2012|epithelial membrane protein 1##AK308505|EMP1|2012|epithelial membrane protein 1##BC047300|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1	0.985541	0.0	denovo_WM_7:-34:0.757
chr12	80009798	80009933	reg1004952.p1	6.778	+	CR627387 NM_001135806 AK308743	-570414	+	TSC_hg19_v1_chr12_+_79258794 BC058917	-751048	+	TSC_hg19_v1_chr12_+_79258597 BC041373	-751273	+	AB590922 CR536549 BC007018 TSC_hg19_v1_chr12_-_80084318	74350	-	U63809 TSC_hg19_v1_chr12_-_80084784 NM_002583	74900	-	AK302692 NM_001143886	297825	-	CR627387|SYT1|6857|synaptotagmin I##NM_001135806|SYT1|6857|synaptotagmin I##AK308743|SYT1|6857|synaptotagmin I##BC058917|SYT1|6857|synaptotagmin I##BC041373|SYT1|6857|synaptotagmin I##CR536549|PAWR|5074|PRKC, apoptosis, WT1, regulator##BC007018|PAWR|5074|PRKC, apoptosis, WT1, regulator##U63809|PAWR|5074|PRKC, apoptosis, WT1, regulator##NM_002583|PAWR|5074|PRKC, apoptosis, WT1, regulator##AK302692|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001143886|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A	0.999414	0.0	
chr5	76958553	76958696	reg1005200.p1	6.778	+	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-24110	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-24195	-	TSC_hg19_v1_chr5_-_76788333 AK001766 BC001807 NM_018268	-170309	-	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	113508	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	631801	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	631853	-	BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##AK001766|WDR41|55255|WD repeat domain 41##BC001807|WDR41|55255|WD repeat domain 41##NM_018268|WDR41|55255|WD repeat domain 41##BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.190851	0.0	
chr8	74585412	74585533	reg1004763.p1	6.778	+	TSC_hg19_v1_chr8_+_74207135 AF456765 BC067131 AY358270	-378203	+	TSC_hg19_v1_chr8_+_74206836 NM_172037	-378663	+	CR456773 L16558 AB529035 BC071671 BC071895 BC087837 BC071894 BC001476 BC006095 X57959 AB055763 AK225246 AK225254 AK291119 AK313365 X52967 BC009599 NM_000971	-379615	-	Y19062 TSC_hg19_v1_chr8_-_74659076 AB210014 AL079285 AK002152 AK126149 AK293496 AK303104 AK314617 BC008369 BC008370	73595	-	TSC_hg19_v1_chr8_-_74659103 AK294466 CR627442 NM_001164380 NM_001164381 NM_001164382 NM_001164383 NM_001164385 NM_014393	73686	-	TSC_hg19_v1_chr8_-_74659707 AK307841 AK293729	74224	-	AF456765|RDH10|157506|retinol dehydrogenase 10 (all-trans)##BC067131|RDH10|157506|retinol dehydrogenase 10 (all-trans)##AY358270|RDH10|157506|retinol dehydrogenase 10 (all-trans)##NM_172037|RDH10|157506|retinol dehydrogenase 10 (all-trans)##CR456773|RPL7|6129|ribosomal protein L7##L16558|RPL7|6129|ribosomal protein L7##BC071671|RPL7|6129|ribosomal protein L7##BC071895|RPL7|6129|ribosomal protein L7##BC087837|RPL7|6129|ribosomal protein L7##BC071894|RPL7|6129|ribosomal protein L7##BC006095|RPL7|6129|ribosomal protein L7##X57959|RPL7|6129|ribosomal protein L7##AK225246|RPL7|6129|ribosomal protein L7##AK225254|RPL7|6129|ribosomal protein L7##AK291119|RPL7|6129|ribosomal protein L7##AK313365|RPL7|6129|ribosomal protein L7##X52967|RPL7|6129|ribosomal protein L7##BC009599|RPL7|6129|ribosomal protein L7##NM_000971|RPL7|6129|ribosomal protein L7##Y19062|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AB210014|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AL079285|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK002152|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK126149|LOC729696|729696|uncharacterized LOC729696##AK293496|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK303104|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK314617|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##BC008369|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##BC008370|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK294466|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##CR627442|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164380|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164381|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164382|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164383|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_001164385|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##NM_014393|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK307841|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)##AK293729|STAU2|27067|staufen, RNA binding protein, homolog 2 (Drosophila)	0.031762	0.904816	CTCF.p2:-56:0.905
chr6	114634179	114634300	reg1005318.p1	6.777	+	AF503292 NM_153612 BC093911 BC093913	-250215	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-341903	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	-341967	-	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	1747643	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	1787770	+	AK097758 TSC_hg19_v1_chr6_-_116422450	1788191	-	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1	1.99645	0.0	denovo_WM_7:-27:0.522	denovo_WM_7:-28:0.234	denovo_WM_7:-42:0.571	denovo_WM_7:-43:0.227
chr8	110657268	110657428	reg1005028.p2	6.777	+	BC012082 AK090559 AK096558 TSC_hg19_v1_chr8_-_110657047 NM_001099753 NM_001099754 NM_001099755	-311	-	AY705385 AB384607 TSC_hg19_v1_chr8_-_110656972	-419	-	NM_001099756	-1930	-	AK055246 NM_001099751 NM_001099752	435	-	AL713645 AB195676 AB195677 AB195678 NM_001099747 NM_001099748 NM_001099749 NM_001099750 NM_017786	3721	-	AK290469 NM_001099745 NM_001099746	35885	-	BC012082|SYBU|55638|syntabulin (syntaxin-interacting)##AK090559|SYBU|55638|syntabulin (syntaxin-interacting)##AK096558|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099753|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099754|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099755|SYBU|55638|syntabulin (syntaxin-interacting)##AY705385|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099756|SYBU|55638|syntabulin (syntaxin-interacting)##AK055246|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099751|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099752|SYBU|55638|syntabulin (syntaxin-interacting)##AL713645|SYBU|55638|syntabulin (syntaxin-interacting)##AB195676|SYBU|55638|syntabulin (syntaxin-interacting)##AB195677|SYBU|55638|syntabulin (syntaxin-interacting)##AB195678|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099747|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099748|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099749|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099750|SYBU|55638|syntabulin (syntaxin-interacting)##NM_017786|SYBU|55638|syntabulin (syntaxin-interacting)##AK290469|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099745|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099746|SYBU|55638|syntabulin (syntaxin-interacting)	0.062386	0.0	
chr16	16712091	16712242	reg1006374.p1	6.776	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-385636	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-385678	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-385684	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	852639	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1861225	-	TSC_hg19_v1_chr16_-_18798077 AK127316	2085930	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	2.970992	0.0	denovo_WM_7:55:0.368	denovo_WM_7:56:0.263	denovo_WM_7:72:0.212	denovo_WM_7:73:0.212	denovo_WM_7:89:0.266	denovo_WM_7:90:0.372
chr12	39300817	39300997	reg1004557.p2	6.775	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-1524	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-590282	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5125434	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	536092	-	AK314254 NM_005164	712935	-	BC038754 NM_001031748 BC048120 AK097445	719088	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	0.935407	0.0	denovo_WM_7:0:0.276	denovo_WM_7:-3:0.649
chr20	361345	361451	reg1004331.p1	6.775	+	TSC_hg19_v1_chr20_+_327754 AK026982	-33649	+	TSC_hg19_v1_chr20_+_327371 NM_024958 AK290527	-33993	+	TSC_hg19_v1_chr20_+_306226 BC067361 NM_006943 U35612 BC028103	-55162	+	AY247738 NM_021158 TSC_hg19_v1_chr20_+_361483 AJ697936 AK026945 AK222837 BC027484	15	+	TSC_hg19_v1_chr20_+_361708 BC019363	310	+	AJ697940 TSC_hg19_v1_chr20_+_361938 AK297546 AJ697937 AJ697938 AJ697939	564	+	AK026982|NRSN2|80023|neurensin 2##NM_024958|NRSN2|80023|neurensin 2##AK290527|NRSN2|80023|neurensin 2##BC067361|SOX12|6666|SRY (sex determining region Y)-box 12##NM_006943|SOX12|6666|SRY (sex determining region Y)-box 12##U35612|SOX12|6666|SRY (sex determining region Y)-box 12##BC028103|SOX12|6666|SRY (sex determining region Y)-box 12##AY247738|TRIB3|57761|tribbles homolog 3 (Drosophila)##NM_021158|TRIB3|57761|tribbles homolog 3 (Drosophila)##AJ697936|TRIB3|57761|tribbles homolog 3 (Drosophila)##AK026945|TRIB3|57761|tribbles homolog 3 (Drosophila)##AK222837|TRIB3|57761|tribbles homolog 3 (Drosophila)##BC027484|TRIB3|57761|tribbles homolog 3 (Drosophila)##BC019363|TRIB3|57761|tribbles homolog 3 (Drosophila)##AK297546|TRIB3|57761|tribbles homolog 3 (Drosophila)	0.998997	0.0	denovo_WM_7:-59:0.310	denovo_WM_7:-60:0.310	denovo_WM_7:-61:0.310
chr8	30013629	30013809	reg1001275.p2	6.775	+	NM_001100916 EU518495	-11519	-	TSC_hg19_v1_chr8_+_29952989 AK075363 AF161461 DQ891897 DQ895083 CR541735 CR541760	-60720	+	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	-60776	+	D84145 NM_006571 TSC_hg19_v1_chr8_+_30013882 AK314128 BC013175 CR456851	136	+	Z36874 TSC_hg19_v1_chr8_+_30209759	196018	+	NM_001008710 NM_001008711 NM_001008712 NM_006867 AK304858 D84107 D84108 D84109 D84110 TSC_hg19_v1_chr8_+_30242056 BC003608	228290	+	NM_001100916|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##EU518495|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##AK075363|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF161461|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ891897|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ895083|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541735|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541760|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##D84145|DCTN6|10671|dynactin 6##NM_006571|DCTN6|10671|dynactin 6##AK314128|DCTN6|10671|dynactin 6##BC013175|DCTN6|10671|dynactin 6##CR456851|DCTN6|10671|dynactin 6##NM_001008710|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008711|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008712|RBPMS|11030|RNA binding protein with multiple splicing##NM_006867|RBPMS|11030|RNA binding protein with multiple splicing##AK304858|RBPMS|11030|RNA binding protein with multiple splicing##D84107|RBPMS|11030|RNA binding protein with multiple splicing##D84108|RBPMS|11030|RNA binding protein with multiple splicing##D84109|RBPMS|11030|RNA binding protein with multiple splicing##D84110|RBPMS|11030|RNA binding protein with multiple splicing##BC003608|RBPMS|11030|RNA binding protein with multiple splicing	0.0	0.0	
chr12	27150691	27150807	reg1006108.p2	6.774	+	NM_001171887 NM_001171888 NM_015633 AK001534 TSC_hg19_v1_chr12_+_27091402 BC032143 AF161472	-59374	+	TSC_hg19_v1_chr12_-_27091213 NM_018164	-59519	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	-59840	-	TSC_hg19_v1_chr12_-_27167274 AK002031 AB032470 BC005176	16409	-	TSC_hg19_v1_chr12_-_27167318 AK023085	16572	-	TSC_hg19_v1_chr12_-_27167332 NM_016551	16586	-	NM_001171887|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_001171888|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_015633|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK001534|FGFR1OP2|26127|FGFR1 oncogene partner 2##BC032143|FGFR1OP2|26127|FGFR1 oncogene partner 2##AF161472|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK002031|TM7SF3|51768|transmembrane 7 superfamily member 3##AB032470|TM7SF3|51768|transmembrane 7 superfamily member 3##BC005176|TM7SF3|51768|transmembrane 7 superfamily member 3##AK023085|TM7SF3|51768|transmembrane 7 superfamily member 3##NM_016551|TM7SF3|51768|transmembrane 7 superfamily member 3	0.998449	0.0	
chr2	138996637	138996805	reg1006140.p2	6.773	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	-274787	+	NM_001080427	-1248260	+	TSC_hg19_v1_chr2_+_137523114 AK299929	-1473605	+	NM_001001664 BC071613 TSC_hg19_v1_chr2_+_139259435	262672	+	TSC_hg19_v1_chr2_+_139259500 AK021919	262769	+	AF043467 AB162675 BC101461 BC101462 BC101463 BC104741 NM_007226	541085	-	NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001001664|SPOPL|339745|speckle-type POZ protein-like##BC071613|SPOPL|339745|speckle-type POZ protein-like##AF043467|NXPH2|11249|neurexophilin 2##AB162675|NXPH2|11249|neurexophilin 2##BC101461|NXPH2|11249|neurexophilin 2##BC101462|NXPH2|11249|neurexophilin 2##BC101463|NXPH2|11249|neurexophilin 2##BC104741|NXPH2|11249|neurexophilin 2##NM_007226|NXPH2|11249|neurexophilin 2	0.0	0.0	
chr4	57845976	57846144	reg1005506.p1	6.773	+	TSC_hg19_v1_chr4_+_57845099 NM_000938 X63563 AB384836	-937	+	TSC_hg19_v1_chr4_+_57845061 AK289823	-992	+	TSC_hg19_v1_chr4_+_57845029 AK294901 AK299090 AK295132 BC023503	-1024	+	TSC_hg19_v1_chr4_-_57976376 AF540057	130339	-	BT006654 L19182 BC017201 S75725 TSC_hg19_v1_chr4_-_57976548	130472	-	AK303915 AK316082 BC066339 NM_001253835 NM_001553 TSC_hg19_v1_chr4_-_57976552	130508	-	NM_000938|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##X63563|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##AK289823|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##AK294901|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##AK299090|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##AK295132|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##BC023503|POLR2B|5431|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa##AF540057|IGFBP7|3490|insulin-like growth factor binding protein 7##BT006654|IGFBP7|3490|insulin-like growth factor binding protein 7##L19182|IGFBP7|3490|insulin-like growth factor binding protein 7##BC017201|IGFBP7|3490|insulin-like growth factor binding protein 7##S75725|IGFBP7|3490|insulin-like growth factor binding protein 7##AK303915|IGFBP7|3490|insulin-like growth factor binding protein 7##AK316082|IGFBP7|3490|insulin-like growth factor binding protein 7##BC066339|IGFBP7|3490|insulin-like growth factor binding protein 7##NM_001253835|IGFBP7|3490|insulin-like growth factor binding protein 7##NM_001553|IGFBP7|3490|insulin-like growth factor binding protein 7	0.993792	0.0	denovo_WM_7:10:0.248	denovo_WM_7:11:0.248	denovo_WM_7:12:0.248	denovo_WM_7:13:0.248
chr13	32437158	32437320	reg1006183.p2	6.772	+	TSC_hg19_v1_chr13_+_32420857 BC021729	-16337	+	NM_001166058 NM_130806 AF453828 AB527208 AY899851	-123526	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	-663029	+	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	168202	+	BC146956 BC146965 NM_001136571	448850	-	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	452378	+	BC021729|EEF1DP3|196549|eukaryotic translation elongation factor 1 delta pseudogene 3##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset	1.120443	0.0	denovo_WM_7:-2:0.802
chr8	110555238	110555418	reg1006491.p1	6.772	+	NM_004215 BC005249 BC022506 AK308950 AB007619 AF006265 AY515724	-2918	+	TSC_hg19_v1_chr8_+_110551942 NM_198120 AK290651 BC017729	-3343	+	AY219181 NM_177531 BC093096 AK128617	-180599	+	AK297182 TSC_hg19_v1_chr8_-_110620232	64898	-	NM_001099756	100090	-	AY705385 AB384607 TSC_hg19_v1_chr8_-_110656972	101601	-	NM_004215|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC005249|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC022506|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK308950|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AB007619|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AF006265|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY515724|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##NM_198120|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK290651|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC017729|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY219181|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_177531|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##BC093096|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##AK297182|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099756|SYBU|55638|syntabulin (syntaxin-interacting)##AY705385|SYBU|55638|syntabulin (syntaxin-interacting)	1.987423	0.0	denovo_WM_7:44:0.510	denovo_WM_7:45:0.275	denovo_WM_7:59:0.288	denovo_WM_7:60:0.524
chr16	11300799	11300938	reg1004781.p1	6.771	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-262425	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-264633	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-264702	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	49182	-	X63758 BC096135 BC096136 BC096137 NM_005425	62270	-	NM_021247	66583	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.981164	0.0	denovo_WM_7:33:0.312	denovo_WM_7:34:0.581
chr5	149519552	149519644	reg1003829.p1	6.771	+	NM_005211 X03663	-26664	-	TSC_hg19_v1_chr5_-_149466188 BC047521 AK304491 M25786	-53365	-	TSC_hg19_v1_chr5_-_149466131 AB208819	-53452	-	M21616 TSC_hg19_v1_chr5_-_149535251 AK293093	15606	-	J03278 M30493 TSC_hg19_v1_chr5_-_149535344	15737	-	BC032224 AB209657 NM_002609 TSC_hg19_v1_chr5_-_149535428	15826	-	NM_005211|CSF1R|1436|colony stimulating factor 1 receptor##X03663|CSF1R|1436|colony stimulating factor 1 receptor##BC047521|CSF1R|1436|colony stimulating factor 1 receptor##AK304491|CSF1R|1436|colony stimulating factor 1 receptor##M25786|CSF1R|1436|colony stimulating factor 1 receptor##AB208819|CSF1R|1436|colony stimulating factor 1 receptor##M21616|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##AK293093|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##J03278|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##M30493|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##BC032224|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##AB209657|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##NM_002609|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide	0.99834	0.017587	denovo_WM_7:-47:0.457	denovo_WM_7:-48:0.457
chr11	131759355	131759478	reg1006044.p1	6.770	+	NM_001048209 AK315964 TSC_hg19_v1_chr11_+_131240520 AK293487 AY358331	-518947	+	TSC_hg19_v1_chr11_-_130786375 NM_014758 AK292457	-973028	-	TSC_hg19_v1_chr11_-_130786371 AK316505 AK304809 AK309202 BC031620 AK316414 D87443	-973071	-	TSC_hg19_v1_chr11_+_131780556 NM_001144058 NM_001144059 NM_016522	21208	+	TSC_hg19_v1_chr11_+_131781303 EF043567 BC050716 CU690778	21923	+	EU562299 BC117254 BC126251 BC143945 BC143946 BC074742 BC074773 L34774 NM_002545 AK289695	1053598	-	NM_001048209|NTM|50863|neurotrimin##AK315964|NTM|50863|neurotrimin##AK293487|NTM|50863|neurotrimin##AY358331|NTM|50863|neurotrimin##NM_014758|SNX19|399979|sorting nexin 19##AK292457|SNX19|399979|sorting nexin 19##AK316505|SNX19|399979|sorting nexin 19##AK304809|SNX19|399979|sorting nexin 19##AK309202|SNX19|399979|sorting nexin 19##BC031620|SNX19|399979|sorting nexin 19##AK316414|SNX19|399979|sorting nexin 19##D87443|SNX19|399979|sorting nexin 19##NM_001144058|NTM|50863|neurotrimin##NM_001144059|NTM|50863|neurotrimin##NM_016522|NTM|50863|neurotrimin##EF043567|NTM|50863|neurotrimin##BC050716|NTM|50863|neurotrimin##EU562299|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC117254|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC126251|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143945|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143946|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074742|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074773|OPCML|4978|opioid binding protein/cell adhesion molecule-like##L34774|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_002545|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK289695|OPCML|4978|opioid binding protein/cell adhesion molecule-like	0.012024	0.0	
chr4	4765026	4765191	reg1005869.p1	6.769	+	TSC_hg19_v1_chr4_+_4543925 BC025734	-221224	+	TSC_hg19_v1_chr4_-_4543750 NM_016930	-221347	-	TSC_hg19_v1_chr4_-_4543741 AK310026	-221377	-	TSC_hg19_v1_chr4_+_4861391 NM_002448 AK290636 M97676 BC021285	96290	+	AF274956 BC031391 DQ890790 DQ890792 DQ893946 NM_018659 AY359101 AF193766	256038	-	TSC_hg19_v1_chr4_+_5053252 AK313846 AK292696 BC069203	288172	+	BC025734|LOC100507266|100507266|uncharacterized LOC100507266##NM_016930|STX18|53407|syntaxin 18##AK310026|STX18|53407|syntaxin 18##NM_002448|MSX1|4487|msh homeobox 1##AK290636|MSX1|4487|msh homeobox 1##M97676|MSX1|4487|msh homeobox 1##BC021285|MSX1|4487|msh homeobox 1##AF274956|CYTL1|54360|cytokine-like 1##BC031391|CYTL1|54360|cytokine-like 1##DQ890790|CYTL1|54360|cytokine-like 1##DQ890792|CYTL1|54360|cytokine-like 1##DQ893946|CYTL1|54360|cytokine-like 1##NM_018659|CYTL1|54360|cytokine-like 1##AY359101|CYTL1|54360|cytokine-like 1##AF193766|CYTL1|54360|cytokine-like 1##AK313846|STK32B|55351|serine/threonine kinase 32B##AK292696|STK32B|55351|serine/threonine kinase 32B##BC069203|STK32B|55351|serine/threonine kinase 32B	0.828758	0.0	denovo_WM_7:3:0.733
chr4	146857521	146857650	reg1003826.p1	6.768	+	NM_001080531	-256230	+	TSC_hg19_v1_chr4_+_146540536 AK126662 NM_172250	-317039	+	U59912 NM_001003688 U54826 AK293055	-453627	+	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	2092	-	BC033879 TSC_hg19_v1_chr4_-_146859976	2383	-	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	239282	+	NM_001080531|C4orf51|646603|chromosome 4 open reading frame 51##AK126662|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##NM_172250|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##U59912|SMAD1|4086|SMAD family member 1##NM_001003688|SMAD1|4086|SMAD family member 1##U54826|SMAD1|4086|SMAD family member 1##AK293055|SMAD1|4086|SMAD family member 1##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.825886	0.0	denovo_WM_7:16:0.730
chr1	151390713	151390893	reg1006073.p1	6.767	+	TSC_hg19_v1_chr1_+_151372038 AK313825 AK294149 D26600 NM_002796 BC008314 BC010088 BC010098 BC011768 BC012168 BC017451 BC017486 BC000331 AB464086 BT006917 CR456820 CU675936 CU678915 CU679615 CU680252 DQ890748 DQ892020 DQ895212 S71381	-18763	+	AK310044 BC009084 NM_003944 TSC_hg19_v1_chr1_-_151345182 AK303815 AK296661 AK309264 AK315643 AK023875 AK298355 BC032997	-45634	-	TSC_hg19_v1_chr1_-_151319726 AK312289 AK302891 NM_000449 NM_001025603 AK311525	-71060	-	TSC_hg19_v1_chr1_-_151414644 AB007930 AB463182 NM_207171 CU691222	23858	-	TSC_hg19_v1_chr1_-_151431656 BX649163 AB037911 AB075477 AK000199 AK300307 BC057773 BX537561 AK299791 AK302501	40873	-	TSC_hg19_v1_chr1_-_151431954 AJ242979 BX537838 NM_001194937 NM_001194938 NM_015100 NM_145796	41128	-	AK313825|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK294149|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##D26600|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##NM_002796|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC008314|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010088|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010098|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC011768|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC012168|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017451|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017486|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC000331|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BT006917|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##CR456820|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ890748|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ892020|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ895212|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##S71381|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK310044|SELENBP1|8991|selenium binding protein 1##BC009084|SELENBP1|8991|selenium binding protein 1##NM_003944|SELENBP1|8991|selenium binding protein 1##AK303815|SELENBP1|8991|selenium binding protein 1##AK296661|SELENBP1|8991|selenium binding protein 1##AK309264|SELENBP1|8991|selenium binding protein 1##AK315643|SELENBP1|8991|selenium binding protein 1##AK023875|SELENBP1|8991|selenium binding protein 1##AK298355|SELENBP1|8991|selenium binding protein 1##BC032997|SELENBP1|8991|selenium binding protein 1##AK312289|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK302891|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_000449|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_001025603|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK311525|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AB007930|POGZ|23126|pogo transposable element with ZNF domain##NM_207171|POGZ|23126|pogo transposable element with ZNF domain##BX649163|POGZ|23126|pogo transposable element with ZNF domain##AB037911|POGZ|23126|pogo transposable element with ZNF domain##AB075477|POGZ|23126|pogo transposable element with ZNF domain##AK000199|POGZ|23126|pogo transposable element with ZNF domain##AK300307|POGZ|23126|pogo transposable element with ZNF domain##BC057773|POGZ|23126|pogo transposable element with ZNF domain##BX537561|POGZ|23126|pogo transposable element with ZNF domain##AK299791|POGZ|23126|pogo transposable element with ZNF domain##AK302501|POGZ|23126|pogo transposable element with ZNF domain##AJ242979|POGZ|23126|pogo transposable element with ZNF domain##BX537838|POGZ|23126|pogo transposable element with ZNF domain##NM_001194937|POGZ|23126|pogo transposable element with ZNF domain##NM_001194938|POGZ|23126|pogo transposable element with ZNF domain##NM_015100|POGZ|23126|pogo transposable element with ZNF domain##NM_145796|POGZ|23126|pogo transposable element with ZNF domain	1.498498	0.0	denovo_WM_7:59:0.572	denovo_WM_7:-103:0.214	denovo_WM_7:-104:0.414	denovo_WM_7:-105:0.298
chr1	214309787	214309938	reg1005090.p1	6.767	+	BC024201 NM_002763	-148003	+	AK298182 TSC_hg19_v1_chr1_+_214161296 U44060	-148573	+	TSC_hg19_v1_chr1_+_213224716 AB070706 EF491805	-1085102	+	TSC_hg19_v1_chr1_+_214454550 BC068511 BC049367 BC094747 BC057793 NM_020197 AF226053 BC098133 BC098276 BC098305 BC098335 BC028104 AK313868 AB590916 BC039890	144575	+	X82676 TSC_hg19_v1_chr1_-_214724620 BC017300 AK090596	414745	-	TSC_hg19_v1_chr1_-_214724946 AK298120 BX538306 AK291641	415037	-	BC024201|PROX1|5629|prospero homeobox 1##NM_002763|PROX1|5629|prospero homeobox 1##AK298182|PROX1|5629|prospero homeobox 1##U44060|PROX1|5629|prospero homeobox 1##AB070706|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC068511|SMYD2|56950|SET and MYND domain containing 2##BC049367|SMYD2|56950|SET and MYND domain containing 2##BC094747|SMYD2|56950|SET and MYND domain containing 2##BC057793|SMYD2|56950|SET and MYND domain containing 2##NM_020197|SMYD2|56950|SET and MYND domain containing 2##AF226053|SMYD2|56950|SET and MYND domain containing 2##BC098133|SMYD2|56950|SET and MYND domain containing 2##BC098276|SMYD2|56950|SET and MYND domain containing 2##BC098305|SMYD2|56950|SET and MYND domain containing 2##BC098335|SMYD2|56950|SET and MYND domain containing 2##BC028104|SMYD2|56950|SET and MYND domain containing 2##AK313868|SMYD2|56950|SET and MYND domain containing 2##BC039890|SMYD2|56950|SET and MYND domain containing 2##X82676|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##BC017300|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK090596|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK298120|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK291641|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14	1.995878	0.0	denovo_WM_7:-2:0.330	denovo_WM_7:-3:0.612	denovo_WM_7:11:0.286	denovo_WM_7:12:0.569
chr15	55550231	55550368	reg1005483.p1	6.767	+	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	-61120	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	-61207	-	NM_001080534	-1245199	+	AF125393 NM_183234 U57094 U38654 NM_004580	12238	-	BC132800 BC136423 BC107680 NM_183236	12799	-	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	31692	-	BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family	0.998433	0.0	
chr6	20292063	20292185	reg1007533.p1	6.767	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	-79452	-	TSC_hg19_v1_chr6_+_19838612 AF085889	-453441	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	-454489	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	109979	+	CR749285 NM_001243076	111909	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	242599	+	BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1	0.0	0.991373	CTCF.p2:-22:0.991
chr12	121636022	121636139	reg1004797.p2	6.766	+	NM_002562 TSC_hg19_v1_chr12_+_121570744 AK294126 AK290405 AK296432 BC011913 BC121157 BC121158 AB209709 BC007679 AK090866 AK225163 AX746656 Y09561 GQ180122 DQ893457 DQ896337 AB590390 CU680114 AY847298 AY847299 AY847300 AY847301 AY847302 AY847303 AY847304 DQ399293	-65379	+	TSC_hg19_v1_chr12_-_121476781 HQ258301 AJ225089 AK314419 NM_003733 NM_198213 AK023956 BC117408 BC117410	-159297	-	TSC_hg19_v1_chr12_-_121454291 AK222630 AK299170 AK301566 AK022510 AK225162 NM_022895 AK307971	-181786	-	U83993 NM_002560	11581	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	11812	+	TSC_hg19_v1_chr12_+_121647948 BC035845 Y07684 BC033826 AB464108 DQ890906 DQ894059 CU689766 AK225604 BT019738 BT019739 AK301080 AF000234	11922	+	NM_002562|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK294126|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK290405|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK296432|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC011913|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121157|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121158|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AB209709|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC007679|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK090866|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK225163|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##Y09561|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##GQ180122|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ893457|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ896337|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847298|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847299|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847300|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847301|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847302|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847303|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847304|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ399293|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##HQ258301|OASL|8638|2'-5'-oligoadenylate synthetase-like##AJ225089|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK314419|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_003733|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_198213|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK023956|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117408|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117410|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK222630|C12orf43|64897|chromosome 12 open reading frame 43##AK299170|C12orf43|64897|chromosome 12 open reading frame 43##AK301566|C12orf43|64897|chromosome 12 open reading frame 43##AK022510|C12orf43|64897|chromosome 12 open reading frame 43##AK225162|C12orf43|64897|chromosome 12 open reading frame 43##NM_022895|C12orf43|64897|chromosome 12 open reading frame 43##AK307971|C12orf43|64897|chromosome 12 open reading frame 43##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC035845|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##Y07684|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC033826|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ890906|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ894059|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK225604|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019738|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019739|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK301080|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AF000234|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4	1.69536	0.0	denovo_WM_7:-19:0.988	denovo_WM_7:22:0.601
chr14	65115188	65115317	reg1006055.p1	6.766	+	TSC_hg19_v1_chr14_+_65016678 AK058044 NM_172365 BC068989	-98607	+	TSC_hg19_v1_chr14_+_65007458 AK097824 BC036107 BC034365 AB527255 BT009815 CU674866 DQ892538 DQ895749	-107760	+	TSC_hg19_v1_chr14_+_65007187 NM_021979	-108018	+	TSC_hg19_v1_chr14_+_65171178 BX248779 NM_015549	55920	+	TSC_hg19_v1_chr14_+_65171243 BC129952 BC129953	56026	+	AB384944 BC136284 BC136285 NM_000347 NM_001024858	174586	-	AK058044|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##NM_172365|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##BC068989|PPP1R36|145376|protein phosphatase 1, regulatory subunit 36##AK097824|HSPA2|3306|heat shock 70kDa protein 2##BC036107|HSPA2|3306|heat shock 70kDa protein 2##BC034365|HSPA2|3306|heat shock 70kDa protein 2##BT009815|HSPA2|3306|heat shock 70kDa protein 2##DQ892538|HSPA2|3306|heat shock 70kDa protein 2##DQ895749|HSPA2|3306|heat shock 70kDa protein 2##NM_021979|HSPA2|3306|heat shock 70kDa protein 2##BX248779|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##NM_015549|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##BC129952|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##BC129953|PLEKHG3|26030|pleckstrin homology domain containing, family G (with RhoGef domain) member 3##BC136284|SPTB|6710|spectrin, beta, erythrocytic##BC136285|SPTB|6710|spectrin, beta, erythrocytic##NM_000347|SPTB|6710|spectrin, beta, erythrocytic##NM_001024858|SPTB|6710|spectrin, beta, erythrocytic	1.980137	0.0	denovo_WM_7:-72:0.208	denovo_WM_7:-94:0.212
chr5	96268766	96268946	reg1005656.p1	6.766	+	TSC_hg19_v1_chr5_+_96212203 AK312864 AB109031 AB163917 BC065240	-56668	+	NM_001130140 NM_022350 AK074281	-57190	+	AK310535 BC030775 NM_001198541	-119031	-	TSC_hg19_v1_chr5_+_96271097 AK096804	2237	+	NM_005575 D50810	2510	+	TSC_hg19_v1_chr5_+_96271783 U62768 AK314226 BC111718 BC113117 BC028692	2938	+	AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_001130140|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_022350|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK074281|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK096804|LNPEP|4012|leucyl/cystinyl aminopeptidase##NM_005575|LNPEP|4012|leucyl/cystinyl aminopeptidase##D50810|LNPEP|4012|leucyl/cystinyl aminopeptidase##U62768|LNPEP|4012|leucyl/cystinyl aminopeptidase##AK314226|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC111718|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC113117|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC028692|LNPEP|4012|leucyl/cystinyl aminopeptidase	0.996181	0.0	
chr9	42254064	42254244	reg1003638.p1	6.765	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-299240	-	BC040528 NM_001113541 NM_015667	-753476	+	BC040528 NM_001113541 NM_015667 NM_001242613	-926775	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	114204	+	NM_001099279 NM_199244	463079	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	879333	-	BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2	0.995772	0.0	denovo_WM_7:-54:0.696
chr11	72807921	72808065	reg1005267.p1	6.764	+	BC142718 BC146660 TSC_hg19_v1_chr11_+_72525476 AK303270 AK091151 AX746810 AK093017 AX747859 BC108672	-282511	+	BC137489 BC137490 TSC_hg19_v1_chr11_+_72525455 BC069189 NM_033388 AK090597 AX746524	-282588	+	AB209473 AK095668 BC035482 BC007919 BC014033 AK310301 AK315255 NM_006645	-303297	-	AK296376 TSC_hg19_v1_chr11_-_72853112 AK297928 AB018312 NM_014824	45056	-	TSC_hg19_v1_chr11_+_72929328 BC012104 NM_002564 NM_176072	121351	+	TSC_hg19_v1_chr11_+_72929414 U07225 BC028135 NM_176071	121453	+	BC142718|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC146660|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK303270|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK091151|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK093017|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC108672|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137489|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137490|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC069189|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##NM_033388|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK090597|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK095668|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC035482|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC007919|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##BC014033|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##AK315255|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##NM_006645|STARD10|10809|StAR-related lipid transfer (START) domain containing 10##AK296376|FCHSD2|9873|FCH and double SH3 domains 2##AK297928|FCHSD2|9873|FCH and double SH3 domains 2##AB018312|FCHSD2|9873|FCH and double SH3 domains 2##NM_014824|FCHSD2|9873|FCH and double SH3 domains 2##BC012104|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_002564|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_176072|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##U07225|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##BC028135|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_176071|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2	1.989692	0.0	denovo_WM_7:46:0.864	denovo_WM_7:61:0.864
chr1	38493861	38494040	reg1005799.p1	6.764	+	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-15520	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-15565	+	TSC_hg19_v1_chr1_-_38471187 BC014501 BC001351 BC011697 AK309179 AK290641 NM_001243878 NM_004468	-22717	-	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	18499	-	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	831436	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	845066	-	AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC014501|FHL3|2275|four and a half LIM domains 3##BC001351|FHL3|2275|four and a half LIM domains 3##BC011697|FHL3|2275|four and a half LIM domains 3##AK309179|FHL3|2275|four and a half LIM domains 3##AK290641|FHL3|2275|four and a half LIM domains 3##NM_001243878|FHL3|2275|four and a half LIM domains 3##NM_004468|FHL3|2275|four and a half LIM domains 3##L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein	0.719393	0.0	denovo_WM_7:6:0.558
chr3	197457377	197457509	reg1001915.p1	6.764	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-102690	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-157242	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-174601	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	6343	-	AK303462 NM_001011537	18980	+	NM_001145642	19124	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	0.9938	0.0	denovo_WM_7:4:0.248	denovo_WM_7:5:0.248	denovo_WM_7:6:0.248	denovo_WM_7:7:0.248
chr7	150064320	150064448	reg1004605.p1	6.764	+	TSC_hg19_v1_chr7_-_150038719 BC000069 L07329 U77594 AB015632 AK092804 AK312197 NM_002889	-25633	-	AL832660 NM_138434	-37477	+	BX640643 NM_001164458	-43675	-	TSC_hg19_v1_chr7_+_150065333 AK292670	961	+	TSC_hg19_v1_chr7_+_150065881 NM_001099695 NM_001099696 NM_013400	1486	+	TSC_hg19_v1_chr7_+_150065968 AK225227 AK025356	1608	+	BC000069|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##U77594|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AB015632|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AK092804|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AK312197|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##NM_002889|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AL832660|C7orf29|113763|chromosome 7 open reading frame 29##NM_138434|C7orf29|113763|chromosome 7 open reading frame 29##BX640643|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164458|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##AK292670|REPIN1|29803|replication initiator 1##NM_001099695|REPIN1|29803|replication initiator 1##NM_001099696|REPIN1|29803|replication initiator 1##NM_013400|REPIN1|29803|replication initiator 1##AK225227|REPIN1|29803|replication initiator 1##AK025356|REPIN1|29803|replication initiator 1	0.999297	0.0	
chr19	1923541	1923668	reg1004969.p1	6.763	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	-18199	+	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	-18252	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-38100	-	TSC_hg19_v1_chr19_+_1941164 NM_001319	17559	+	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	17584	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	92066	-	AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2	0.999941	0.0	
chr2	47171315	47171495	reg1004442.p1	6.763	+	TSC_hg19_v1_chr2_-_47168913 NM_001171508 NM_001171511	-2458	-	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	-2532	-	TSC_hg19_v1_chr2_+_47168400 BC047709 BC111487	-3002	+	AK097491 NM_001163561 NM_173649	211065	-	TSC_hg19_v1_chr2_-_47403624 M19311 BC003354 BC006464	232221	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	232245	-	NM_001171508|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171511|MCFD2|90411|multiple coagulation factor deficiency 2##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2##BC111487|TTC7A|57217|tetratricopeptide repeat domain 7A##AK097491|C2orf61|285051|chromosome 2 open reading frame 61##NM_001163561|C2orf61|285051|chromosome 2 open reading frame 61##NM_173649|C2orf61|285051|chromosome 2 open reading frame 61##M19311|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC003354|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC006464|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)	0.0	0.0	
chr19	2017263	2017437	reg1003760.p1	6.761	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	-1680	-	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	-76162	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	-76187	+	AL137615 TSC_hg19_v1_chr19_-_2039474 AK024347 AK097012	22151	-	TSC_hg19_v1_chr19_-_2041865 AK092536	24546	-	TSC_hg19_v1_chr19_-_2042036 AK001730	24700	-	AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##AL137615|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK024347|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK097012|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK092536|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2	2.816951	0.0	denovo_WM_7:-17:0.594	denovo_WM_7:-35:0.586	denovo_WM_7:69:0.458	denovo_WM_7:70:0.251	denovo_WM_7:84:0.259
chr17	44729818	44729978	reg1006703.p2	6.760	+	NM_006178 AF135168 AF102846 AK294001 AK294727 AK294886 AK299786 BC030613 AK226078 AK290204 AK316057 U03985	-61821	+	BC020869 AB209344 AF208864 BX647266 NM_001113738 NM_016632	-72851	-	BC040501 CR749232 NM_001006607	-139823	+	AB464356 AB067628 BC114219 BC112116 BC112118 AY009397 NM_030753	166123	-	AY358217 AK127615 AB063483 NM_003396 BC064534 AB590853	199076	+	TSC_hg19_v1_chr17_+_45000492 NM_001012511 NM_004287 NM_054022	270589	+	NM_006178|NSF|4905|N-ethylmaleimide-sensitive factor##AF135168|NSF|4905|N-ethylmaleimide-sensitive factor##AF102846|NSF|4905|N-ethylmaleimide-sensitive factor##AK294001|NSF|4905|N-ethylmaleimide-sensitive factor##AK294727|NSF|4905|N-ethylmaleimide-sensitive factor##AK294886|NSF|4905|N-ethylmaleimide-sensitive factor##AK299786|NSF|4905|N-ethylmaleimide-sensitive factor##BC030613|NSF|4905|N-ethylmaleimide-sensitive factor##AK226078|NSF|4905|N-ethylmaleimide-sensitive factor##AK290204|NSF|4905|N-ethylmaleimide-sensitive factor##AK316057|NSF|4905|N-ethylmaleimide-sensitive factor##U03985|NSF|4905|N-ethylmaleimide-sensitive factor##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AB209344|ARL17A|51326|ADP-ribosylation factor-like 17A##AF208864|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2##AB067628|WNT3|7473|wingless-type MMTV integration site family, member 3##BC114219|WNT3|7473|wingless-type MMTV integration site family, member 3##BC112116|WNT3|7473|wingless-type MMTV integration site family, member 3##BC112118|WNT3|7473|wingless-type MMTV integration site family, member 3##AY009397|WNT3|7473|wingless-type MMTV integration site family, member 3##NM_030753|WNT3|7473|wingless-type MMTV integration site family, member 3##AY358217|WNT9B|7484|wingless-type MMTV integration site family, member 9B##AK127615|WNT9B|7484|wingless-type MMTV integration site family, member 9B##AB063483|WNT9B|7484|wingless-type MMTV integration site family, member 9B##NM_003396|WNT9B|7484|wingless-type MMTV integration site family, member 9B##BC064534|WNT9B|7484|wingless-type MMTV integration site family, member 9B##NM_001012511|GOSR2|9570|golgi SNAP receptor complex member 2##NM_004287|GOSR2|9570|golgi SNAP receptor complex member 2##NM_054022|GOSR2|9570|golgi SNAP receptor complex member 2	0.978792	0.0	denovo_WM_7:30:0.954
chr2	80723070	80723178	reg1005381.p1	6.760	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-191281	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-191399	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-191599	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3963246	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3963271	-	NM_003849	3963461	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	1.949456	0.0	denovo_WM_7:-36:0.860	denovo_WM_7:-51:0.860
chr9	112144993	112145101	reg1005345.p1	6.760	+	TSC_hg19_v1_chr9_-_112083330 AB032179	-61757	-	TSC_hg19_v1_chr9_-_112083007 AF153416 AF153418 NM_018424 NM_019114	-62035	-	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	-215518	-	AK296265 AK296388 AK316118 NM_001145371 NM_001145372	46166	-	BX648253 NM_001145369 NM_001145370	68616	-	TSC_hg19_v1_chr9_-_112260588 BC063287 AK295875 AK304434 AK316066 NM_001145368 NM_002829	115542	-	AB032179|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153416|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153418|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_018424|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_019114|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4##AK296265|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK296388|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316118|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145371|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145372|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BX648253|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145369|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145370|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BC063287|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK295875|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK304434|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316066|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145368|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_002829|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	0.988921	0.0	denovo_WM_7:-5:0.322	denovo_WM_7:-6:0.322	denovo_WM_7:-7:0.322
chr6	21589489	21589669	reg1000306.p2	6.759	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1054856	+	CR749285 NM_001243076	-1185546	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-1187476	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	4793	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	77080	+	BC015850 NM_000948	708150	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.706081	CTCF.p2:79:0.706
chr11	69044618	69044774	reg1005748.p2	6.758	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-187170	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-228270	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-228346	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	16926	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	411160	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	411214	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	0.773481	0.0	denovo_WM_7:-66:0.773
chr2	146402529	146402643	reg1003040.p1	6.758	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-1124665	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	-1124955	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-1127383	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	2199531	+	TSC_hg19_v1_chr2_+_148602300 AK314124	2199749	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	2200059	+	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA	0.925915	0.0	denovo_WM_7:63:0.206	denovo_WM_7:70:0.208	denovo_WM_7:71:0.282
chr7	6594642	6594797	reg1005457.p2	6.758	+	NM_001145118	-3653	-	DQ892879 DQ896128 CU675925 CU680460 CU687206 X63745 TSC_hg19_v1_chr7_-_6523784 BC008081 BC012994 BC071982 AK127440 AK315702 NM_001100603 NM_006854	-70951	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	-107111	-	TSC_hg19_v1_chr7_+_6617111 AK223532 NM_001134387 NM_001134388 NM_001134389 NM_018106 AK001341 AK308971 AL136674 BC001239 AY359090	22399	+	TSC_hg19_v1_chr7_+_6629662 BC001076 BC005121 AK056149 NM_024067	35067	+	NM_017560	60807	+	NM_001145118|GRID2IP|392862|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein##DQ892879|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##DQ896128|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##X63745|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##BC008081|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##BC012994|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##BC071982|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##AK315702|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##NM_001100603|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##NM_006854|KDELR2|11014|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta##AK223532|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_001134387|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_001134388|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_001134389|ZDHHC4|55146|zinc finger, DHHC-type containing 4##NM_018106|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AK001341|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AK308971|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AL136674|ZDHHC4|55146|zinc finger, DHHC-type containing 4##BC001239|ZDHHC4|55146|zinc finger, DHHC-type containing 4##AY359090|ZDHHC4|55146|zinc finger, DHHC-type containing 4##BC001076|C7orf26|79034|chromosome 7 open reading frame 26##BC005121|C7orf26|79034|chromosome 7 open reading frame 26##AK056149|C7orf26|79034|chromosome 7 open reading frame 26##NM_024067|C7orf26|79034|chromosome 7 open reading frame 26##NM_017560|ZNF853|54753|zinc finger protein 853	0.986263	0.0	denovo_WM_7:-56:0.807
chr9	42254247	42254367	reg1003638.p2	6.758	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-299393	-	BC040528 NM_001113541 NM_015667	-753629	+	BC040528 NM_001113541 NM_015667 NM_001242613	-926928	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	114051	+	NM_001099279 NM_199244	462926	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	879180	-	BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2	0.992865	0.0	
chr10	35415789	35415916	reg1004759.p1	6.757	+	TSC_hg19_v1_chr10_-_35379513 BC095405 BC110901 AL832733 AK095217 NM_001198777	-36328	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	-36580	-	AK310225 AK300491 NM_001198778 NM_001198779	-52640	-	NM_001881 NM_182850 NM_182853 NM_183013 BC066342 TSC_hg19_v1_chr10_+_35415928 BC017117	10	+	D14825 TSC_hg19_v1_chr10_+_35416154	283	+	NM_181571 NM_183060 BC041810	533	+	BC095405|CUL2|8453|cullin 2##BC110901|CUL2|8453|cullin 2##AL832733|CUL2|8453|cullin 2##AK095217|CUL2|8453|cullin 2##NM_001198777|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##NM_001881|CREM|1390|cAMP responsive element modulator##NM_182850|CREM|1390|cAMP responsive element modulator##NM_182853|CREM|1390|cAMP responsive element modulator##NM_183013|CREM|1390|cAMP responsive element modulator##BC066342|CREM|1390|cAMP responsive element modulator##BC017117|CREM|1390|cAMP responsive element modulator##D14825|CREM|1390|cAMP responsive element modulator##NM_181571|CREM|1390|cAMP responsive element modulator##NM_183060|CREM|1390|cAMP responsive element modulator##BC041810|CREM|1390|cAMP responsive element modulator	0.0	0.950755	CTCF.p2:-37:0.951
chr10	38679947	38680127	reg1000323.p2	6.754	+	AK295332 AY829267 AF165514 AF165517 BC071987 TSC_hg19_v1_chr10_+_38645320 AK293968 AK307174 CU687208	-34700	+	TSC_hg19_v1_chr10_+_38383292 NM_001007094 NM_001178101 NM_003421 AK092012 AX747310 BX647089 AJ492195 BC015858	-296754	+	TSC_hg19_v1_chr10_+_38299631 NM_006954 NM_006974 AK303445 AK292844 BC017760 AK027057 D31763	-380442	+	TSC_hg19_v1_chr10_-_38691741 BC171738 BC042387 BC048143	11719	-	TSC_hg19_v1_chr10_-_42863441 AF519622 AK131313	4183426	-	AX721135 TSC_hg19_v1_chr10_-_43048257 AK308832 AK026980 BC045697 AX721116	4368165	-	AK295332|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AY829267|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AF165514|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AF165517|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##BC071987|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AK293968|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##AK307174|HSD17B7P2|158160|hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2##NM_001007094|ZNF37A|7587|zinc finger protein 37A##NM_001178101|ZNF37A|7587|zinc finger protein 37A##NM_003421|ZNF37A|7587|zinc finger protein 37A##AK092012|ZNF37A|7587|zinc finger protein 37A##BX647089|ZNF37A|7587|zinc finger protein 37A##AJ492195|ZNF37A|7587|zinc finger protein 37A##BC015858|ZNF37A|7587|zinc finger protein 37A##NM_006954|ZNF33A|7581|zinc finger protein 33A##NM_006974|ZNF33A|7581|zinc finger protein 33A##AK303445|ZNF33A|7581|zinc finger protein 33A##AK292844|ZNF33A|7581|zinc finger protein 33A##BC017760|ZNF33A|7581|zinc finger protein 33A##AK027057|ZNF33A|7581|zinc finger protein 33A##D31763|ZNF33A|7581|zinc finger protein 33A##BC171738|SEPT7L|285961|septin 7-like##BC042387|SEPT7L|285961|septin 7-like##BC048143|SEPT7L|285961|septin 7-like##AF519622|LOC441666|441666|zinc finger protein 91 pseudogene##AK308832|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##AK026980|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##BC045697|ZNF37BP|100129482|zinc finger protein 37B, pseudogene	0.784236	0.0	denovo_WM_7:-16:0.423
chr6	37139996	37140165	reg1005297.p2	6.754	+	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	-1958	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-166579	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-185810	-	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	85306	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	85519	+	TSC_hg19_v1_chr6_-_37225916 BC009625 NM_001162900	85847	-	NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK315067|MTCH1|23787|mitochondrial carrier 1##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B##BC009625|TMEM217|221468|transmembrane protein 217##NM_001162900|TMEM217|221468|transmembrane protein 217	0.0	0.973865	CTCF.p2:49:0.974
chr20	43607937	43608117	reg1004892.p2	6.753	+	AK315238 U60207 TSC_hg19_v1_chr20_+_43595176 BC058916 BC039023 U18297	-12836	+	NM_006282 TSC_hg19_v1_chr20_+_43595152 AB209315 BC029511 AK309169 AK225326 BC005231 BC015332 BC038850 CR933633 BC093768	-12881	+	AB590243 BT020008 BT020009 CR456765 CU677113 DQ891151 EU176561 TSC_hg19_v1_chr20_-_43589038 AK129538 U58970 BC014907 AK222952 BC001763 BC007423 AK000594 BC006573 AB085681 AK302128 AK307655 NM_006809	-18973	-	BC132957 BC132959 BC144234 TSC_hg19_v1_chr20_-_43729732 AK289735 NM_002251	121662	-	CU691668 AY038181 BC039173 AY358822 NM_145652	135740	-	AB464352 AY358678 AY037803 NM_080869	145069	-	AK315238|STK4|6789|serine/threonine kinase 4##U60207|STK4|6789|serine/threonine kinase 4##BC058916|STK4|6789|serine/threonine kinase 4##BC039023|STK4|6789|serine/threonine kinase 4##U18297|STK4|6789|serine/threonine kinase 4##NM_006282|STK4|6789|serine/threonine kinase 4##AB209315|STK4|6789|serine/threonine kinase 4##BC029511|STK4|6789|serine/threonine kinase 4##AK309169|STK4|6789|serine/threonine kinase 4##AK225326|STK4|6789|serine/threonine kinase 4##BC005231|STK4|6789|serine/threonine kinase 4##BC015332|STK4|6789|serine/threonine kinase 4##BC038850|STK4|6789|serine/threonine kinase 4##CR933633|STK4|6789|serine/threonine kinase 4##BC093768|STK4|6789|serine/threonine kinase 4##BT020008|TOMM34|10953|translocase of outer mitochondrial membrane 34##BT020009|TOMM34|10953|translocase of outer mitochondrial membrane 34##CR456765|TOMM34|10953|translocase of outer mitochondrial membrane 34##DQ891151|TOMM34|10953|translocase of outer mitochondrial membrane 34##EU176561|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK129538|TOMM34|10953|translocase of outer mitochondrial membrane 34##U58970|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC014907|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK222952|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC001763|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC007423|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK000594|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC006573|TOMM34|10953|translocase of outer mitochondrial membrane 34##AB085681|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK302128|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK307655|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006809|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC132957|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC132959|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC144234|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AK289735|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##NM_002251|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AY038181|WFDC5|149708|WAP four-disulfide core domain 5##BC039173|WFDC5|149708|WAP four-disulfide core domain 5##AY358822|WFDC5|149708|WAP four-disulfide core domain 5##NM_145652|WFDC5|149708|WAP four-disulfide core domain 5##AY358678|WFDC12|128488|WAP four-disulfide core domain 12##AY037803|WFDC12|128488|WAP four-disulfide core domain 12##NM_080869|WFDC12|128488|WAP four-disulfide core domain 12	0.0	0.0	
chr7	73265927	73266029	reg1006150.p1	6.753	+	TSC_hg19_v1_chr7_-_73256847 AK301597 AF534110 NM_152559 AY354928	-9116	-	NM_001305 TSC_hg19_v1_chr7_+_73245327 AK026651 AK124076 BC000671 AB000712	-20707	+	TSC_hg19_v1_chr7_-_73184607 AB000714 BC009083 BC016056 AK313276 NM_001306	-81407	-	AY372053 BC030643 NM_182504 GQ129394 GQ129395 AY372054	9546	+	NM_000501 NM_001081752 NM_001081753 NM_001081754 NM_001081755 AK075554 TSC_hg19_v1_chr7_+_73442441 AK075494	176455	+	TSC_hg19_v1_chr7_+_73442462 AK125511 AK130894	176478	+	AK301597|WBSCR27|155368|Williams Beuren syndrome chromosome region 27##AF534110|WBSCR27|155368|Williams Beuren syndrome chromosome region 27##NM_152559|WBSCR27|155368|Williams Beuren syndrome chromosome region 27##AY354928|WBSCR27|155368|Williams Beuren syndrome chromosome region 27##NM_001305|CLDN4|1364|claudin 4##AK026651|CLDN4|1364|claudin 4##AK124076|CLDN4|1364|claudin 4##BC000671|CLDN4|1364|claudin 4##AB000712|CLDN4|1364|claudin 4##AB000714|CLDN3|1365|claudin 3##BC009083|CLDN3|1365|claudin 3##BC016056|CLDN3|1365|claudin 3##AK313276|CLDN3|1365|claudin 3##NM_001306|CLDN3|1365|claudin 3##AY372053|WBSCR28|135886|Williams-Beuren syndrome chromosome region 28##BC030643|WBSCR28|135886|Williams-Beuren syndrome chromosome region 28##NM_182504|WBSCR28|135886|Williams-Beuren syndrome chromosome region 28##GQ129394|WBSCR28|135886|Williams-Beuren syndrome chromosome region 28##GQ129395|WBSCR28|135886|Williams-Beuren syndrome chromosome region 28##AY372054|WBSCR28|135886|Williams-Beuren syndrome chromosome region 28##NM_000501|ELN|2006|elastin##NM_001081752|ELN|2006|elastin##NM_001081753|ELN|2006|elastin##NM_001081754|ELN|2006|elastin##NM_001081755|ELN|2006|elastin##AK075554|ELN|2006|elastin##AK075494|ELN|2006|elastin##AK125511|ELN|2006|elastin##AK130894|ELN|2006|elastin	0.0	0.0	
chr9	6923193	6923373	reg1006037.p2	6.753	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	-165244	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	-165616	+	AK310439 NM_001146696	-202421	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	876432	-	TSC_hg19_v1_chr9_+_8713275 AY779046	1790009	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	1810636	-	AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123##AY779046|RPL18A|6142|ribosomal protein L18a##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D	1.176299	0.0	denovo_WM_7:-46:0.903
chr19	58330497	58330677	reg1002846.p1	6.752	+	AK097041 AK293445 NM_024762	-4307	-	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-49458	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-49570	+	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	500	+	AK122919 NM_001204818 AK299091	11083	+	NM_001204817 NM_032828 TSC_hg19_v1_chr19_+_58361208	30608	+	AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein##NM_001204817|ZNF587|84914|zinc finger protein 587##NM_032828|ZNF587|84914|zinc finger protein 587	1.012371	0.0	
chr6	2310358	2310507	reg1005695.p1	6.752	+	TSC_hg19_v1_chr6_+_2245995 AK023629	-64419	+	CR541929 CR541947 DQ892789 DQ896036 AF042377 TSC_hg19_v1_chr6_-_2245809 AK130651 AK313953 BC000117 NM_001500	-64634	-	AF040260 NM_001253846	-134208	-	NM_152554	324865	-	BX647582 NM_001012418 AK096893	440744	-	TSC_hg19_v1_chr6_+_2765561 AK315047	455148	+	CR541929|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541947|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ892789|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ896036|GMDS|2762|GDP-mannose 4,6-dehydratase##AF042377|GMDS|2762|GDP-mannose 4,6-dehydratase##AK130651|GMDS|2762|GDP-mannose 4,6-dehydratase##AK313953|GMDS|2762|GDP-mannose 4,6-dehydratase##BC000117|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001500|GMDS|2762|GDP-mannose 4,6-dehydratase##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_152554|C6orf195|154386|chromosome 6 open reading frame 195##BX647582|MYLK4|340156|myosin light chain kinase family, member 4##NM_001012418|MYLK4|340156|myosin light chain kinase family, member 4##AK096893|MYLK4|340156|myosin light chain kinase family, member 4##AK315047|WRNIP1|56897|Werner helicase interacting protein 1	0.999296	0.0	denovo_WM_7:-16:0.629	denovo_WM_7:-17:0.244
chr1	145454634	145454791	reg1005822.p1	6.751	+	TSC_hg19_v1_chr1_+_145438489 NM_006472 AK301203 BX537824 AK226090 S73591 BC093702 BC093704 AB527234 AY594328 BC024305 AK301148	-16036	+	NM_145277 NM_202004 NM_213652 NM_213653 AK223575 AK092682 AK315852 AX747669 BC017926 AK096905 AK290831 AK292742 AK092692 AK124273 AX747673 BC085604	-41449	+	AY894562 AY894570 NM_001039703	-161411	+	TSC_hg19_v1_chr1_-_145470375 AK092209 AK056984 BC004355 NM_032305 BC050418	15676	-	AK128050 NM_001039888 TSC_hg19_v1_chr1_+_145470529	15806	+	TSC_hg19_v1_chr1_+_145472481 AK094282	17810	+	NM_006472|TXNIP|10628|thioredoxin interacting protein##AK301203|TXNIP|10628|thioredoxin interacting protein##BX537824|TXNIP|10628|thioredoxin interacting protein##AK226090|TXNIP|10628|thioredoxin interacting protein##S73591|TXNIP|10628|thioredoxin interacting protein##BC093702|TXNIP|10628|thioredoxin interacting protein##BC093704|TXNIP|10628|thioredoxin interacting protein##AY594328|TXNIP|10628|thioredoxin interacting protein##BC024305|TXNIP|10628|thioredoxin interacting protein##AK301148|TXNIP|10628|thioredoxin interacting protein##NM_145277|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_202004|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213652|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213653|HFE2|148738|hemochromatosis type 2 (juvenile)##AK223575|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092682|HFE2|148738|hemochromatosis type 2 (juvenile)##AK315852|HFE2|148738|hemochromatosis type 2 (juvenile)##BC017926|HFE2|148738|hemochromatosis type 2 (juvenile)##AK096905|HFE2|148738|hemochromatosis type 2 (juvenile)##AK290831|HFE2|148738|hemochromatosis type 2 (juvenile)##AK292742|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092692|HFE2|148738|hemochromatosis type 2 (juvenile)##AK124273|HFE2|148738|hemochromatosis type 2 (juvenile)##BC085604|HFE2|148738|hemochromatosis type 2 (juvenile)##AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894570|NBPF8|728841|neuroblastoma breakpoint family, member 8##NM_001039703|NBPF10|100132406|neuroblastoma breakpoint family, member 10##AK092209|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK056984|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC004355|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##NM_032305|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC050418|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK128050|ANKRD34A|284615|ankyrin repeat domain 34A##NM_001039888|ANKRD34A|284615|ankyrin repeat domain 34A##AK094282|ANKRD34A|284615|ankyrin repeat domain 34A	1.449079	0.0	denovo_WM_7:3:0.497	denovo_WM_7:4:0.328	denovo_WM_7:92:0.613
chr16	1661873	1661975	reg1004339.p1	6.751	+	TSC_hg19_v1_chr16_-_1660720 AB011162 AK299035 AK299115	-1232	-	BC105785 AY358178 NM_024600	-77729	+	TSC_hg19_v1_chr16_+_1583666 BC020425	-78228	+	TSC_hg19_v1_chr16_-_1662054 NM_014714	114	-	NM_020825	2716	+	AK309909 AK296998 NM_144570 TSC_hg19_v1_chr16_+_1728279 AK023154	66344	+	AB011162|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299035|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299115|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##BC105785|TMEM204|79652|transmembrane protein 204##AY358178|TMEM204|79652|transmembrane protein 204##NM_024600|TMEM204|79652|transmembrane protein 204##BC020425|TMEM204|79652|transmembrane protein 204##NM_014714|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##NM_020825|CRAMP1L|57585|Crm, cramped-like (Drosophila)##AK309909|HN1L|90861|hematological and neurological expressed 1-like##AK296998|HN1L|90861|hematological and neurological expressed 1-like##NM_144570|HN1L|90861|hematological and neurological expressed 1-like##AK023154|HN1L|90861|hematological and neurological expressed 1-like	0.986174	0.0	denovo_WM_7:-101:0.807
chr12	111175253	111175433	reg1003173.p1	6.750	+	AK293543 NM_001040107	-47744	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	-48385	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-123418	+	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	5203	-	TSC_hg19_v1_chr12_-_111180641 X74008 BC014073	5313	-	TSC_hg19_v1_chr12_-_111180730 NM_001244974 NM_002710	5413	-	AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##X74008|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##BC014073|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_001244974|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_002710|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	1.914902	0.0	denovo_WM_7:-25:0.277	denovo_WM_7:-52:0.257
chr13	36937095	36937256	reg1006461.p2	6.750	+	TSC_hg19_v1_chr13_-_36920854 BX648004 NM_001142295	-16317	-	TSC_hg19_v1_chr13_-_36920622 BC026284 NM_001142296 NM_015087	-16551	-	TSC_hg19_v1_chr13_-_36920498 AK291724	-16675	-	AK057764 NM_001142294	7127	-	NM_001111046 NM_001111047 TSC_hg19_v1_chr13_+_37006047 AK301897	68844	+	AK314261 NM_001111045 NM_003914	69233	+	BX648004|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_001142295|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##BC026284|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_001142296|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_015087|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AK291724|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AK057764|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_001142294|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_001111046|CCNA1|8900|cyclin A1##NM_001111047|CCNA1|8900|cyclin A1##AK301897|CCNA1|8900|cyclin A1##AK314261|CCNA1|8900|cyclin A1##NM_001111045|CCNA1|8900|cyclin A1##NM_003914|CCNA1|8900|cyclin A1	0.0	0.0	
chr11	63623611	63623791	reg1005069.p1	6.749	+	TSC_hg19_v1_chr11_+_63606599 AK307858	-17097	+	TSC_hg19_v1_chr11_+_63606564 AK225766	-17152	+	TSC_hg19_v1_chr11_+_63606486 AB188493 NM_001039469 NM_001163296 NM_001163297 NM_004954	-17275	+	NM_017490 AK290339 TSC_hg19_v1_chr11_+_63656059 X97630 AY562188	32375	+	BC023587 NM_173587	60614	-	TSC_hg19_v1_chr11_-_63684632 AB593132	60938	-	AK307858|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK225766|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AB188493|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001039469|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163296|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163297|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_004954|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_017490|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK290339|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##X97630|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AY562188|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##AB593132|RCOR2|283248|REST corepressor 2	1.903556	0.0	denovo_WM_7:87:0.825	denovo_WM_7:102:0.840
chr10	75639566	75639706	reg1005230.p1	6.748	+	AB590440 L07044 DQ892365 DQ895574 DQ896692 TSC_hg19_v1_chr10_-_75634275 U66064 AK131199 AK095576 BC034044 AK225771 AK291704 AK301180 NM_001204492 NM_001222 NM_172169 NM_172170 NM_172171 NM_172173	-5317	-	TSC_hg19_v1_chr10_-_75571579 BC018681 AK303648 NM_003635	-68071	-	BC035711 TSC_hg19_v1_chr10_-_75571357 BC052780	-68262	-	NM_001145031 NM_002658 TSC_hg19_v1_chr10_+_75670889 AK297940 AK298560 AK312960	31241	+	BC013575 K03226 M15476 D00244 TSC_hg19_v1_chr10_+_75670948 X02760	31305	+	AB208961 TSC_hg19_v1_chr10_+_75673428	33751	+	L07044|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ892365|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ895574|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ896692|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##U66064|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK131199|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK095576|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##BC034044|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK225771|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK291704|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK301180|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001204492|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001222|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172169|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172170|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172171|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172173|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##BC018681|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##AK303648|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##NM_003635|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##BC035711|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##NM_001145031|PLAU|5328|plasminogen activator, urokinase##NM_002658|PLAU|5328|plasminogen activator, urokinase##AK297940|PLAU|5328|plasminogen activator, urokinase##AK298560|PLAU|5328|plasminogen activator, urokinase##AK312960|PLAU|5328|plasminogen activator, urokinase##BC013575|PLAU|5328|plasminogen activator, urokinase##K03226|PLAU|5328|plasminogen activator, urokinase##M15476|PLAU|5328|plasminogen activator, urokinase##D00244|PLAU|5328|plasminogen activator, urokinase##X02760|PLAU|5328|plasminogen activator, urokinase##AB208961|PLAU|5328|plasminogen activator, urokinase	0.14654	0.857409	CTCF.p2:-43:0.857
chr19	38826237	38826389	reg1006353.p1	6.748	+	AK022344 TSC_hg19_v1_chr19_+_38810861	-15506	+	TSC_hg19_v1_chr19_+_38810572 BC004367 DQ893422 DQ896740 CU678688	-15747	+	TSC_hg19_v1_chr19_+_38810523 EU978937	-15787	+	NM_021185 BC033852 AK128220 BC060889 BC094785 AL133023	200	+	AK301771 NM_002812	38873	+	TSC_hg19_v1_chr19_+_38865427 AK304486 BC001164 BC065006 D38047 AB464081 CU674590 BT019688 AK308809	39223	+	AK022344|KCNK6|9424|potassium channel, subfamily K, member 6##BC004367|KCNK6|9424|potassium channel, subfamily K, member 6##DQ893422|KCNK6|9424|potassium channel, subfamily K, member 6##DQ896740|KCNK6|9424|potassium channel, subfamily K, member 6##EU978937|KCNK6|9424|potassium channel, subfamily K, member 6##NM_021185|CATSPERG|57828|cation channel, sperm-associated, gamma##BC033852|CATSPERG|57828|cation channel, sperm-associated, gamma##AK128220|CATSPERG|57828|cation channel, sperm-associated, gamma##BC060889|CATSPERG|57828|cation channel, sperm-associated, gamma##BC094785|CATSPERG|57828|cation channel, sperm-associated, gamma##AL133023|CATSPERG|57828|cation channel, sperm-associated, gamma##AK301771|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##NM_002812|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##AK304486|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BC001164|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BC065006|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##D38047|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##BT019688|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8##AK308809|PSMD8|5714|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	0.0	0.220681	CTCF.p2:-12:0.221
chr6	12363874	12364013	reg1005667.p1	6.748	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	-73350	+	NM_002114	-351220	+	NM_001143948 NM_032744	-584664	-	TSC_hg19_v1_chr6_+_12514301 D28417	150359	+	AK295263 TSC_hg19_v1_chr6_+_12716998	353000	+	AK290017 NM_001242648 NM_030948 TSC_hg19_v1_chr6_+_12717049	353100	+	NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##AK295263|PHACTR1|221692|phosphatase and actin regulator 1##AK290017|PHACTR1|221692|phosphatase and actin regulator 1##NM_001242648|PHACTR1|221692|phosphatase and actin regulator 1##NM_030948|PHACTR1|221692|phosphatase and actin regulator 1	1.039865	0.0	
chr10	75837857	75837993	reg1005579.p1	6.747	+	TSC_hg19_v1_chr10_+_75757873 AK304823 NM_003373 NM_014000 AK300280 AK296509 BC099919 BC039174 M33308 AB385172 DQ894680	-80019	+	BC049374 NM_001001791	-155391	-	AB208961 TSC_hg19_v1_chr10_+_75673428	-164538	+	TSC_hg19_v1_chr10_-_75910513 BC067127	72587	-	TSC_hg19_v1_chr10_-_75910561 AK315597 AK026983 AK299352 BC026232 NM_012095 NM_207012	72763	-	TSC_hg19_v1_chr10_+_75910978 NM_001202450 NM_006721 AK301590 U90338 U33936	73044	+	AK304823|VCL|7414|vinculin##NM_003373|VCL|7414|vinculin##NM_014000|VCL|7414|vinculin##AK300280|VCL|7414|vinculin##AK296509|VCL|7414|vinculin##BC039174|VCL|7414|vinculin##M33308|VCL|7414|vinculin##DQ894680|VCL|7414|vinculin##BC049374|C10orf55|414236|chromosome 10 open reading frame 55##NM_001001791|C10orf55|414236|chromosome 10 open reading frame 55##AB208961|PLAU|5328|plasminogen activator, urokinase##BC067127|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK315597|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK026983|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK299352|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##BC026232|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_012095|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_207012|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_001202450|ADK|132|adenosine kinase##NM_006721|ADK|132|adenosine kinase##AK301590|ADK|132|adenosine kinase##U90338|ADK|132|adenosine kinase##U33936|ADK|132|adenosine kinase	0.576743	0.0	denovo_WM_7:-29:0.217
chr2	3786135	3786237	reg1005458.p1	6.747	+	AK302299 NM_018436 BC029652	-80389	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-143617	+	X74803 TSC_hg19_v1_chr2_+_3627765	-158441	+	U23752 AB028641 NM_003108 BC025789 AB464713	2046629	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	3219714	-	TSC_hg19_v1_chr2_-_7006650 AK308509	3220517	-	AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##X74803|RPS7|6201|ribosomal protein S7##U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	1.994488	0.033102	denovo_WM_7:-31:0.251	denovo_WM_7:-32:0.699	denovo_WM_7:-47:0.773
chr9	136601139	136601294	reg1006304.p2	6.747	+	NM_000787 Y00096 BC017174 X13255 X13256 DQ893630 EU176683 CU677847	-99708	+	AB528863 BC146946 BC146961 NM_001080515	-155861	-	TSC_hg19_v1_chr9_+_136399879 BC050544 NM_014694	-201291	+	TSC_hg19_v1_chr9_-_136603475 AK291211 AF047004 AF047190 AJ223317 NM_001134707	2262	-	BC136363 BC136364 BC144035 AK223402 TSC_hg19_v1_chr9_-_136605067 AF095735 AF095737 AK298348 AK316494 NM_007101	3770	-	BX640754 TSC_hg19_v1_chr9_-_136857447 AB587478 S76992 BC132965 BC132967 NM_001134398 NM_003371	256230	-	NM_000787|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##Y00096|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BC017174|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13255|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13256|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##DQ893630|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##EU176683|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BC146946|FAM163B|642968|family with sequence similarity 163, member B##BC146961|FAM163B|642968|family with sequence similarity 163, member B##NM_001080515|FAM163B|642968|family with sequence similarity 163, member B##BC050544|ADAMTSL2|9719|ADAMTS-like 2##NM_014694|ADAMTSL2|9719|ADAMTS-like 2##AK291211|SARDH|1757|sarcosine dehydrogenase##AF047004|SARDH|1757|sarcosine dehydrogenase##AF047190|SARDH|1757|sarcosine dehydrogenase##AJ223317|SARDH|1757|sarcosine dehydrogenase##NM_001134707|SARDH|1757|sarcosine dehydrogenase##BC136363|SARDH|1757|sarcosine dehydrogenase##BC136364|SARDH|1757|sarcosine dehydrogenase##BC144035|SARDH|1757|sarcosine dehydrogenase##AK223402|SARDH|1757|sarcosine dehydrogenase##AF095735|SARDH|1757|sarcosine dehydrogenase##AF095737|SARDH|1757|sarcosine dehydrogenase##AK298348|SARDH|1757|sarcosine dehydrogenase##AK316494|SARDH|1757|sarcosine dehydrogenase##NM_007101|SARDH|1757|sarcosine dehydrogenase##BX640754|VAV2|7410|vav 2 guanine nucleotide exchange factor##S76992|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132965|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132967|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_001134398|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_003371|VAV2|7410|vav 2 guanine nucleotide exchange factor	0.999103	0.0	denovo_WM_7:-44:0.310	denovo_WM_7:-45:0.310	denovo_WM_7:-46:0.310
chr9	1759141	1759291	reg1006136.p1	6.747	+	AF130729 NM_181872	-708607	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-708846	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	-708872	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	256080	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	862591	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	862858	+	AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chr2	232175909	232176059	reg1005778.p2	6.746	+	TSC_hg19_v1_chr2_+_232120778 AB055779	-55206	+	TSC_hg19_v1_chr2_+_232063410 AY929062	-112590	+	AY219922 TSC_hg19_v1_chr2_+_232063378	-112606	+	AF502430 NM_145236 TSC_hg19_v1_chr2_+_232260454 AK126207 AB528076	84438	+	AK001314 TSC_hg19_v1_chr2_-_232326464	150445	-	AB385068 CU677918 AK000221 TSC_hg19_v1_chr2_-_232329196 AK091742 AK095897 AK122805 AX747156 NM_005381 AK127608	153151	-	AY929062|ARMC9|80210|armadillo repeat containing 9##AY219922|ARMC9|80210|armadillo repeat containing 9##AF502430|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##NM_145236|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK126207|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK001314|NCL|4691|nucleolin##AK000221|NCL|4691|nucleolin##AK091742|NCL|4691|nucleolin##AK095897|NCL|4691|nucleolin##AK122805|NCL|4691|nucleolin##NM_005381|NCL|4691|nucleolin##AK127608|NCL|4691|nucleolin	0.96005	0.0	denovo_WM_7:26:0.950
chr13	75663222	75663377	reg1006054.p1	6.745	+	TSC_hg19_v1_chr13_-_74708425 AK291397	-954903	-	AF161471 AF113122 NM_007249	-955310	-	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	-2030095	+	CR749622 TSC_hg19_v1_chr13_-_75901948	238623	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	393039	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	448679	-	AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##CR749622|TBC1D4|9882|TBC1 domain family, member 4##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6	0.998039	0.0	denovo_WM_7:-9:0.687
chr2	47402142	47402296	reg1006086.p1	6.745	+	AK097491 NM_001163561 NM_173649	-19749	-	TSC_hg19_v1_chr2_-_47168913 NM_001171508 NM_001171511	-233272	-	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	-233346	-	TSC_hg19_v1_chr2_-_47403624 M19311 BC003354 BC006464	1407	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	1431	-	TSC_hg19_v1_chr2_-_47403656 BC008437	1435	-	AK097491|C2orf61|285051|chromosome 2 open reading frame 61##NM_001163561|C2orf61|285051|chromosome 2 open reading frame 61##NM_173649|C2orf61|285051|chromosome 2 open reading frame 61##NM_001171508|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171511|MCFD2|90411|multiple coagulation factor deficiency 2##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2##M19311|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC003354|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC006464|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)	0.990196	0.0	denovo_WM_7:9:0.322	denovo_WM_7:10:0.322	denovo_WM_7:11:0.322
chr4	1195252	1195383	reg1004179.p1	6.745	+	BC104228 BC104229 BC112991 BC112992 BC044945 AK091779 AX747178 TSC_hg19_v1_chr4_-_1195337	-75	-	TSC_hg19_v1_chr4_-_1166969 NM_001128325	-28339	-	TSC_hg19_v1_chr4_-_1166567 AK074770 BC036341 AB027466 AY358948 NM_012445	-28716	-	CR627052 NM_001199021	7432	-	AB527760 DQ891918 DQ895102 TSC_hg19_v1_chr4_-_1242878 AF091555 BC011655 U37408	47493	-	TSC_hg19_v1_chr4_-_1242910 BC072021 BC053320 NM_001012614 NM_001328 BC098400	47591	-	BC104228|LOC100130872|100130872|uncharacterized LOC100130872##BC104229|LOC100130872|100130872|uncharacterized LOC100130872##BC112991|LOC100130872|100130872|uncharacterized LOC100130872##BC112992|LOC100130872|100130872|uncharacterized LOC100130872##BC044945|LOC100130872|100130872|uncharacterized LOC100130872##AK091779|LOC100130872|100130872|uncharacterized LOC100130872##NM_001128325|SPON2|10417|spondin 2, extracellular matrix protein##AK074770|SPON2|10417|spondin 2, extracellular matrix protein##BC036341|SPON2|10417|spondin 2, extracellular matrix protein##AB027466|SPON2|10417|spondin 2, extracellular matrix protein##AY358948|SPON2|10417|spondin 2, extracellular matrix protein##NM_012445|SPON2|10417|spondin 2, extracellular matrix protein##CR627052|LOC100130872|100130872|uncharacterized LOC100130872##NM_001199021|SPON2|10417|spondin 2, extracellular matrix protein##DQ891918|CTBP1|1487|C-terminal binding protein 1##DQ895102|CTBP1|1487|C-terminal binding protein 1##AF091555|CTBP1|1487|C-terminal binding protein 1##BC011655|CTBP1|1487|C-terminal binding protein 1##U37408|CTBP1|1487|C-terminal binding protein 1##BC072021|CTBP1|1487|C-terminal binding protein 1##BC053320|CTBP1|1487|C-terminal binding protein 1##NM_001012614|CTBP1|1487|C-terminal binding protein 1##NM_001328|CTBP1|1487|C-terminal binding protein 1##BC098400|CTBP1|1487|C-terminal binding protein 1	0.995685	0.0	denovo_WM_7:62:0.983
chr1	113574014	113574151	reg1006018.p1	6.744	+	TSC_hg19_v1_chr1_+_113499054 BC023568 BC047723 BC062295 BX648855	-75049	+	TSC_hg19_v1_chr1_-_113498861 AK303603 AJ438943 NM_003051	-75181	-	BC045664 AK094064 NM_001166496 AF239919 AL162079 TSC_hg19_v1_chr1_-_113498818 AK296688 AK312500 BC026317	-75365	-	TSC_hg19_v1_chr1_+_113615809 AK291031 CR936669 AB018349 NM_014813 AL161998	41733	+	TSC_hg19_v1_chr1_+_113615865 BC117368 BC117370 AB527394	41864	+	BC130409 BC144144 NM_001142782 NM_152900	359392	+	BC062295|LOC100506392|100506392|uncharacterized LOC100506392##BX648855|LOC100506392|100506392|uncharacterized LOC100506392##AK303603|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AJ438943|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##NM_003051|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##BC045664|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK094064|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##NM_001166496|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AF239919|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AL162079|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK296688|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK312500|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##BC026317|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK291031|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##CR936669|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AB018349|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##NM_014813|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##AL161998|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC117368|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC117370|LRIG2|9860|leucine-rich repeats and immunoglobulin-like domains 2##BC130409|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##BC144144|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_001142782|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3##NM_152900|MAGI3|260425|membrane associated guanylate kinase, WW and PDZ domain containing 3	0.0	0.0	
chr11	60679846	60679992	reg1005214.p1	6.744	+	TSC_hg19_v1_chr11_-_60674060 AJ131186 BC008719 BC018665 BC018698 NM_014502	-5868	-	CU679057 DQ893003 DQ896249 AB527521 TSC_hg19_v1_chr11_-_60674025 AF086469	-5976	-	NM_207341	-44905	+	NM_024092 AK303961 TSC_hg19_v1_chr11_+_60681578 AK313913	1560	+	TSC_hg19_v1_chr11_+_60681647 AX775851 BC001309 AX775849	1749	+	TSC_hg19_v1_chr11_+_60691945 NM_017870 NM_178031 AK000546 BC114569 BC032059	12016	+	AJ131186|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##BC008719|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##BC018665|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##BC018698|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##NM_014502|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##DQ893003|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##DQ896249|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##AF086469|PRPF19|27339|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)##NM_207341|ZP1|22917|zona pellucida glycoprotein 1 (sperm receptor)##NM_024092|TMEM109|79073|transmembrane protein 109##AK303961|TMEM109|79073|transmembrane protein 109##AK313913|TMEM109|79073|transmembrane protein 109##AX775851|TMEM109|79073|transmembrane protein 109##BC001309|TMEM109|79073|transmembrane protein 109##AX775849|TMEM109|79073|transmembrane protein 109##NM_017870|TMEM132A|54972|transmembrane protein 132A##NM_178031|TMEM132A|54972|transmembrane protein 132A##AK000546|TMEM132A|54972|transmembrane protein 132A##BC114569|TMEM132A|54972|transmembrane protein 132A##BC032059|TMEM132A|54972|transmembrane protein 132A	0.992948	0.0	denovo_WM_7:0:0.314	denovo_WM_7:0:0.314	denovo_WM_7:1:0.314
chr4	917950	918080	reg1006341.p1	6.744	+	AK126578 TSC_hg19_v1_chr4_-_819894 AK311921 AB593095 BC002471 NM_006651	-98090	-	TSC_hg19_v1_chr4_-_775606 BC040652 AK055583	-142393	-	TSC_hg19_v1_chr4_+_699570 AK225892 NM_006315 AK057124 AK300290 AK125801	-218385	+	TSC_hg19_v1_chr4_-_925898 BT007015 D88435	7906	-	BC063606 TSC_hg19_v1_chr4_-_926081 BC008668	8070	-	TSC_hg19_v1_chr4_-_926104 AK299554	8091	-	AK126578|CPLX1|10815|complexin 1##AK311921|CPLX1|10815|complexin 1##AB593095|CPLX1|10815|complexin 1##BC002471|CPLX1|10815|complexin 1##NM_006651|CPLX1|10815|complexin 1##BC040652|LOC100129917|100129917|uncharacterized LOC100129917##AK055583|LOC100129917|100129917|uncharacterized LOC100129917##AK225892|PCGF3|10336|polycomb group ring finger 3##NM_006315|PCGF3|10336|polycomb group ring finger 3##AK057124|PCGF3|10336|polycomb group ring finger 3##AK300290|PCGF3|10336|polycomb group ring finger 3##AK125801|PCGF3|10336|polycomb group ring finger 3##BT007015|GAK|2580|cyclin G associated kinase##D88435|GAK|2580|cyclin G associated kinase##BC063606|GAK|2580|cyclin G associated kinase##BC008668|GAK|2580|cyclin G associated kinase##AK299554|GAK|2580|cyclin G associated kinase	0.996443	0.0	
chr5	42812268	42812426	reg1005440.p2	6.744	+	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-356	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-55409	+	BC136496 NM_001242460 NM_001242461 NM_001242462	-246383	+	TSC_hg19_v1_chr5_-_42993436 AK056817	181099	-	AB463523 BC067873 AY032883 NM_001014279	227949	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	308654	+	Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC136496|GHR|2690|growth hormone receptor##NM_001242460|GHR|2690|growth hormone receptor##NM_001242461|GHR|2690|growth hormone receptor##NM_001242462|GHR|2690|growth hormone receptor##AK056817|FLJ32255|643977|uncharacterized LOC643977##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131	1.365622	0.0	denovo_WM_7:13:0.419	denovo_WM_7:14:0.419	denovo_WM_7:41:0.366
chr19	57952510	57952629	reg1006064.p2	6.743	+	TSC_hg19_v1_chr19_+_57946689 NM_001023561 AK122794	-5880	+	TSC_hg19_v1_chr19_+_57922528 NM_006959 AK127948 AK098183	-30038	+	TSC_hg19_v1_chr19_+_57901344 AK299069 EU446719	-51171	+	NM_020633	15537	-	AK294941 AK293825 AK302574 AK301562 CR749225 BC150292 BX647068 NM_001024596 NM_001144068	36345	-	NM_001098491 NM_001098492 NM_001098493 NM_001098494 NM_001098495 NM_001098496 NM_024691 TSC_hg19_v1_chr19_+_57999117 AK316297 AK309427 AK307802 AK026886 AK302135 AK316156 AK304569 BC008297 BC024259 AB209371	46636	+	NM_001023561|ZNF749|388567|zinc finger protein 749##AK122794|ZNF749|388567|zinc finger protein 749##NM_006959|ZNF17|7565|zinc finger protein 17##AK127948|ZNF17|7565|zinc finger protein 17##AK098183|ZNF17|7565|zinc finger protein 17##AK299069|ZNF548|147694|zinc finger protein 548##EU446719|ZNF17|7565|zinc finger protein 17##NM_020633|VN1R1|57191|vomeronasal 1 receptor 1##AK294941|ZNF772|400720|zinc finger protein 772##AK293825|ZNF772|400720|zinc finger protein 772##AK302574|ZNF772|400720|zinc finger protein 772##AK301562|ZNF772|400720|zinc finger protein 772##CR749225|ZNF772|400720|zinc finger protein 772##BC150292|ZNF772|400720|zinc finger protein 772##BX647068|ZNF772|400720|zinc finger protein 772##NM_001024596|ZNF772|400720|zinc finger protein 772##NM_001144068|ZNF772|400720|zinc finger protein 772##NM_001098491|ZNF419|79744|zinc finger protein 419##NM_001098492|ZNF419|79744|zinc finger protein 419##NM_001098493|ZNF419|79744|zinc finger protein 419##NM_001098494|ZNF419|79744|zinc finger protein 419##NM_001098495|ZNF419|79744|zinc finger protein 419##NM_001098496|ZNF419|79744|zinc finger protein 419##NM_024691|ZNF419|79744|zinc finger protein 419##AK316297|ZNF419|79744|zinc finger protein 419##AK309427|ZNF419|79744|zinc finger protein 419##AK307802|ZNF419|79744|zinc finger protein 419##AK026886|ZNF419|79744|zinc finger protein 419##AK302135|ZNF419|79744|zinc finger protein 419##AK316156|ZNF419|79744|zinc finger protein 419##AK304569|ZNF419|79744|zinc finger protein 419##BC008297|ZNF419|79744|zinc finger protein 419##BC024259|ZNF419|79744|zinc finger protein 419##AB209371|ZNF419|79744|zinc finger protein 419	0.995758	0.0	
chr2	202016381	202016542	reg1005419.p1	6.743	+	AF041459 NM_001202515	-11464	+	NM_001202518 AK304585 AF041462	-18739	+	TSC_hg19_v1_chr2_+_201983419 AK289913 AK315208	-32989	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	31159	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	31399	+	NM_001080124 NM_001228 NM_033355 NM_033358 AF422927 AF422928 BC010390 AK310630 BC017031 U60520 X98176	81764	+	AF041459|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202515|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202518|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK304585|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041462|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK289913|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315208|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001080124|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001228|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033355|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033358|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422927|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422928|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC010390|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310630|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC017031|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##U60520|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98176|CASP8|841|caspase 8, apoptosis-related cysteine peptidase	0.965353	0.073364	denovo_WM_7:-6:0.803
chr10	52122569	52122717	reg1004416.p1	6.741	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-114303	-	NM_018232	-284758	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-294921	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	261060	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	377067	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	522750	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.0	0.0	
chr16	81850128	81850308	reg1003269.p1	6.741	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-37288	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-37316	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-37321	+	BC019670 AK315652 AK026740 NM_145168	194850	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	218643	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	218714	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	1.999154	0.0	denovo_WM_7:46:0.845	denovo_WM_7:61:0.741	denovo_WM_7:62:0.243
chr6	32603672	32603796	reg1006303.p2	6.741	+	AF010142 M16954 M16955 M16956 M16957 M16958 M16959 M17377 M17378 U31770 U17380 U17379 D86415 X99896 M28584 M30180 AF490771 AJ297582 AJ297583 AJ297584 AJ297585 AJ297587 AJ302075 AY626551 AY770514 AY935719 AY961062 AY961063 AY961064 AY961065 AY961066 AY961067 AY961069 AY961070 AY961071 AY961072 AY961073 AY961074 AY961076 AY961077 AY961078 DQ002917 DQ090958 EU375850 GQ891551 HM067843 HM067844 HM067847 HM067848 HM067849 HM067850 HM067852 HM067853 HM067854 HM067855 HM067856 HM067857 HM067858 HM067859 HM067860 HM067861 HM067862 HM067863 HM627215 M11161 M30179 AB528619 CU678949 CU689080 L02545 X99895 U84892 AJ697892 AJ697893 U95989 BC171883 M11867 M20504 M28583 L76133 U65585 BC033827 M20430 AB062112 M26038 BC007920 TSC_hg19_v1_chr6_-_32557583 M33600 BC108922 X12544 AK291499 X03069 AK225683 AK225690 AK289463 AK290388 BC008403 BC031023 AK291987 NM_001243965 NM_002124 AK293020	-46206	-	AF017439 TSC_hg19_v1_chr6_-_32552033 U56640 AF436097 U83583 U83584 U95818 M21008 AM056024	-51661	-	U17380 M30181 AB463852 M20429 NM_002125 BC009234 AK314834 TSC_hg19_v1_chr6_-_32498065 M57648 M32578 M20503	-105717	-	AK130811 AK313975 NM_002122 TSC_hg19_v1_chr6_+_32605182 BC073977 BC051832 AB209628 X00452 L46875 L46876 L46877 L46878 L46879 L46880 L46881 U77589 M34996 M20431 L34082 L34083 L34084 L34085 L34090 L34094 M59802	1509	+	L34097 L34098 L34101 L34102 L34103 L34105 L34106 L34107 L40180 L42626 M17207 M22550 M59800 M59801 U66400 M17565 X00369 M35982 M57649 AF000447 U83585 AF291674 AY656681 M16996 X96420 M17563 M17564 AF522251 AB209580 TSC_hg19_v1_chr6_-_32634435 AK295476 AK295695 M60028 M20432 AK296613 AK316333 M25327 X03068 NM_001243961 NM_002123 M16276	30706	-	NM_020056 TSC_hg19_v1_chr6_+_32709167 L34094	105491	+	AF010142|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16954|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16955|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16956|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16957|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16959|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M17377|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M17378|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U31770|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##U17379|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##D86415|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28584|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30180|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF490771|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297582|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297587|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY626551|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY770514|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY935719|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961062|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961063|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961064|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961065|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961066|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961067|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961070|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961072|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961073|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961076|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961077|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961078|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ002917|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ090958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11161|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30179|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L02545|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##X99895|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ697892|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ697893|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11867|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20504|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L76133|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U65585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC033827|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20430|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AB062112|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M26038|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC007920|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M33600|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC108922|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291499|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##X03069|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK225683|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK225690|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK289463|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC008403|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC031023|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291987|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_001243965|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_002124|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK293020|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF017439|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##U56640|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AF436097|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U95818|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M21008|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30181|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M20429|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##NM_002125|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##BC009234|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AK314834|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M57648|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M32578|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M20503|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AK130811|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AK313975|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##NM_002122|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC073977|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC051832|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AB209628|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##X00452|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L46875|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##U77589|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M34996|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M20431|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34082|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34083|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34084|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34085|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34090|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M59802|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34097|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34098|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34101|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34102|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34103|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34105|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34106|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34107|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L40180|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L42626|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17207|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M22550|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59800|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59801|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U66400|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17565|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X00369|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M35982|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M57649|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF000447|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U83585|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF291674|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AY656681|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16996|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X96420|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17563|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17564|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AB209580|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295476|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295695|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M60028|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M20432|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK296613|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK316333|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M25327|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X03068|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_001243961|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_002123|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16276|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_020056|HLA-DQA2|3118|major histocompatibility complex, class II, DQ alpha 2##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1	1.09101	0.026864	denovo_WM_7:-27:0.219	denovo_WM_7:-28:0.680
chr10	29879686	29879812	reg1005613.p1	6.739	+	BX648589 TSC_hg19_v1_chr10_-_29754623	-125198	-	BC031656 TSC_hg19_v1_chr10_+_29698527 BC063483 AL832706	-181232	+	TSC_hg19_v1_chr10_+_29698496 BC073888	-181251	+	TSC_hg19_v1_chr10_-_29923841 BC057241 BC070247	44112	-	AF109135 NM_021738 TSC_hg19_v1_chr10_-_29923901	44158	-	TSC_hg19_v1_chr10_-_30024866 AF051850 NM_003174	145015	-	BX648589|SVIL|6840|supervillin##BC031656|LOC387647|387647|patched domain containing 3 pseudogene##BC063483|LOC387647|387647|patched domain containing 3 pseudogene##AL832706|LOC387647|387647|patched domain containing 3 pseudogene##BC073888|LOC387647|387647|patched domain containing 3 pseudogene##AF109135|SVIL|6840|supervillin##NM_021738|SVIL|6840|supervillin##AF051850|SVIL|6840|supervillin##NM_003174|SVIL|6840|supervillin	0.0	0.992095	CTCF.p2:45:0.992
chr5	86636702	86636837	reg1004314.p1	6.739	+	TSC_hg19_v1_chr5_+_86564758 NM_022650 AK300269 BC070063 BC020761 BC107870 AK312739 AK300263 AK300406 M23612 BC054891	-72016	+	TSC_hg19_v1_chr5_+_86564238 CU689592	-72516	+	TSC_hg19_v1_chr5_+_86564146 M23379	-72614	+	AK021812 TSC_hg19_v1_chr5_+_86676755	39918	+	TSC_hg19_v1_chr5_-_86703928 AK094534	67192	-	CU675079 CU677687 CU692576 AB590163 CR407658 DQ892550 DQ895761 U12685 TSC_hg19_v1_chr5_-_86708717 U11791 BC022351 BC016823 BC016705 AK291720 BC005280 BX537673 NM_001199189	71896	-	NM_022650|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AK300269|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC070063|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC020761|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC107870|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AK312739|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AK300263|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AK300406|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##M23612|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC054891|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##M23379|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AK094534|CCNH|902|cyclin H##CR407658|CCNH|902|cyclin H##DQ892550|CCNH|902|cyclin H##DQ895761|CCNH|902|cyclin H##U12685|CCNH|902|cyclin H##U11791|CCNH|902|cyclin H##BC022351|CCNH|902|cyclin H##BC016823|CCNH|902|cyclin H##BC016705|CCNH|902|cyclin H##AK291720|CCNH|902|cyclin H##BC005280|CCNH|902|cyclin H##BX537673|CCNH|902|cyclin H##NM_001199189|CCNH|902|cyclin H	0.878833	0.0	denovo_WM_7:14:0.250	denovo_WM_7:15:0.588
chr17	44512239	44512399	reg1006172.p1	6.738	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	-73197	-	BC040501 CR749232 NM_014834	-139823	+	AK291259 NM_001193465	-209592	-	BC040501 CR749232 NM_001006607	77756	+	BC020869 AB209344 AF208864 BX647266 NM_001113738 NM_016632	144728	-	NM_006178 AF135168 AF102846 AK294001 AK294727 AK294886 AK299786 BC030613 AK226078 AK290204 AK316057 U03985	155758	+	BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_014834|LRRC37A|9884|leucine rich repeat containing 37A##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AB209344|ARL17A|51326|ADP-ribosylation factor-like 17A##AF208864|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_006178|NSF|4905|N-ethylmaleimide-sensitive factor##AF135168|NSF|4905|N-ethylmaleimide-sensitive factor##AF102846|NSF|4905|N-ethylmaleimide-sensitive factor##AK294001|NSF|4905|N-ethylmaleimide-sensitive factor##AK294727|NSF|4905|N-ethylmaleimide-sensitive factor##AK294886|NSF|4905|N-ethylmaleimide-sensitive factor##AK299786|NSF|4905|N-ethylmaleimide-sensitive factor##BC030613|NSF|4905|N-ethylmaleimide-sensitive factor##AK226078|NSF|4905|N-ethylmaleimide-sensitive factor##AK290204|NSF|4905|N-ethylmaleimide-sensitive factor##AK316057|NSF|4905|N-ethylmaleimide-sensitive factor##U03985|NSF|4905|N-ethylmaleimide-sensitive factor	0.978792	0.0	denovo_WM_7:37:0.954
chr19	10769648	10769828	reg1005538.p1	6.737	+	TSC_hg19_v1_chr19_+_10765110 AF141870	-4570	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	-4692	+	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	-4798	+	AB528039 AF167569 AF167570 CU687952 HQ322263 HQ322264 HQ322265 TSC_hg19_v1_chr19_+_10781789	11988	+	TSC_hg19_v1_chr19_+_10791025 AJ271747	21310	+	NM_031209 TSC_hg19_v1_chr19_+_10812129 AK314308 AK057877 AK225173 AK294166 AF302783 AF370379 BC015350 AF302784	42420	+	AF141870|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF167569|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF167570|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322263|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322265|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_031209|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK314308|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK057877|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK225173|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK294166|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302783|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF370379|QTRT1|81890|queuine tRNA-ribosyltransferase 1##BC015350|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302784|QTRT1|81890|queuine tRNA-ribosyltransferase 1	0.99724	0.0	denovo_WM_7:24:0.950
chr9	93955945	93956099	reg1005884.p1	6.737	+	NM_001174167 X73568	-366289	+	TSC_hg19_v1_chr9_+_93564206 NM_001174168 BC011399	-391807	+	TSC_hg19_v1_chr9_+_93564100 AK290927	-391907	+	TSC_hg19_v1_chr9_-_94124185 AB528075 AM393420 CU676666 DQ892036 DQ895227 X79888 AK302453	168148	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	168177	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	230022	-	NM_001174167|SYK|6850|spleen tyrosine kinase##X73568|SYK|6850|spleen tyrosine kinase##NM_001174168|SYK|6850|spleen tyrosine kinase##BC011399|SYK|6850|spleen tyrosine kinase##AK290927|SYK|6850|spleen tyrosine kinase##AM393420|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ892036|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ895227|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##X79888|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK302453|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated	0.999507	0.0	denovo_WM_7:-14:0.749
chr19	14702295	14702412	reg1005019.p1	6.735	+	AK127809 NM_001204118 NM_207390 BC140848 BC144664 BC144665	-8439	+	CR450354 DQ891899 DQ895085 AF217091 TSC_hg19_v1_chr19_-_14682879 M33374 AF112200 BC002595 NM_004146	-19504	-	TSC_hg19_v1_chr19_+_14640435 AK001416 AK315412 BC007801 BC013881 BC005952 AF038958 BC002425 BC034484 AF222742 AX771269 AF038959 AB529027 DQ891949 DQ895135 EU832830 GQ129437	-61894	+	AY358817 AK290909 BC121130 BC121131 BC128053 BC148282 AK298653 AF239764 BC142639 AL832663 NM_032571	83324	-	AK291471 AK094028 AX748419 TSC_hg19_v1_chr19_+_14800878 AK307147 BC064571 NM_032433 BC048107 BX647475 AF372702 AK309208	98411	+	BC082991 AF114491 AK301458 AK222891 AK298700 TSC_hg19_v1_chr19_-_14887654	185285	-	NM_001204118|CLEC17A|388512|C-type lectin domain family 17, member A##NM_207390|CLEC17A|388512|C-type lectin domain family 17, member A##BC140848|CLEC17A|388512|C-type lectin domain family 17, member A##BC144664|CLEC17A|388512|C-type lectin domain family 17, member A##BC144665|CLEC17A|388512|C-type lectin domain family 17, member A##CR450354|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ891899|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ895085|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF217091|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##M33374|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF112200|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##BC002595|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##NM_004146|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AK001416|TECR|9524|trans-2,3-enoyl-CoA reductase##AK315412|TECR|9524|trans-2,3-enoyl-CoA reductase##BC007801|TECR|9524|trans-2,3-enoyl-CoA reductase##BC013881|TECR|9524|trans-2,3-enoyl-CoA reductase##BC005952|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038958|TECR|9524|trans-2,3-enoyl-CoA reductase##BC002425|TECR|9524|trans-2,3-enoyl-CoA reductase##BC034484|TECR|9524|trans-2,3-enoyl-CoA reductase##AF222742|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038959|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ891949|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ895135|TECR|9524|trans-2,3-enoyl-CoA reductase##EU832830|TECR|9524|trans-2,3-enoyl-CoA reductase##GQ129437|TECR|9524|trans-2,3-enoyl-CoA reductase##AY358817|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK290909|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121130|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121131|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC128053|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC148282|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK298653|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AF239764|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC142639|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AL832663|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##NM_032571|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK291471|ZNF333|84449|zinc finger protein 333##AK094028|ZNF333|84449|zinc finger protein 333##AK307147|ZNF333|84449|zinc finger protein 333##BC064571|ZNF333|84449|zinc finger protein 333##NM_032433|ZNF333|84449|zinc finger protein 333##BC048107|ZNF333|84449|zinc finger protein 333##BX647475|ZNF333|84449|zinc finger protein 333##AF372702|ZNF333|84449|zinc finger protein 333##AK309208|ZNF333|84449|zinc finger protein 333##BC082991|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AF114491|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK301458|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK222891|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK298700|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2	0.997348	0.0	denovo_WM_7:23:0.816
chr4	141728992	141729158	reg1005499.p1	6.734	+	NM_015130 TSC_hg19_v1_chr4_-_141677529	-51576	-	U28480 BC069556 BC096736 BC098168 BC098258 BC098352 NM_021833	-239155	-	TSC_hg19_v1_chr4_+_141445351 BX648843 BC015168 AK093087	-283720	+	TSC_hg19_v1_chr4_-_142054516 AB033040 NM_020724	325456	-	TSC_hg19_v1_chr4_+_142142051 NM_014487 AK315463 BC004421	412980	+	TSC_hg19_v1_chr4_+_142142087 AK294089 AK223609 AK002106 AJ006591	413011	+	NM_015130|TBC1D9|23158|TBC1 domain family, member 9 (with GRAM domain)##U28480|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC069556|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC096736|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098168|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098258|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098352|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##NM_021833|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BX648843|ELMOD2|255520|ELMO/CED-12 domain containing 2##BC015168|ELMOD2|255520|ELMO/CED-12 domain containing 2##AK093087|ELMOD2|255520|ELMO/CED-12 domain containing 2##AB033040|RNF150|57484|ring finger protein 150##NM_020724|RNF150|57484|ring finger protein 150##NM_014487|ZNF330|27309|zinc finger protein 330##AK315463|ZNF330|27309|zinc finger protein 330##BC004421|ZNF330|27309|zinc finger protein 330##AK294089|ZNF330|27309|zinc finger protein 330##AK223609|ZNF330|27309|zinc finger protein 330##AK002106|ZNF330|27309|zinc finger protein 330##AJ006591|ZNF330|27309|zinc finger protein 330	0.0	0.0	
chrX	118798810	118798990	reg1001836.p1	6.734	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-59072	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-71918	-	BC042021 NM_181777	-84603	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	28185	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	28232	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	28279	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.9946	0.0	
chrX	71793028	71793208	reg1003694.p1	6.734	+	AK074326 AK296641 NM_001166418 NM_001166419 NM_001166420 NM_001166422 NM_001166448 NM_018486	-194	-	AB527476 CU690678 EU446822 EU832800 GQ129378 AF245664 AY429539 BC050433 BC011800 BC023642 AK300895 AJ277724 TSC_hg19_v1_chrX_-_71792667 AK294903 AF212246 AK298767	-454	-	U65092 TSC_hg19_v1_chrX_-_71527008 NM_001144886	-266100	-	X73878 BC104944 BC143499 BC143501 X73874 NM_001122670 NM_001172436 NM_002637 TSC_hg19_v1_chrX_-_71934110	140825	-	NM_001080851 NM_033053 AB527486 CU688748	271804	+	AB527486 CU688748 NM_001080851 NM_033053	302456	-	AK074326|HDAC8|55869|histone deacetylase 8##AK296641|HDAC8|55869|histone deacetylase 8##NM_001166418|HDAC8|55869|histone deacetylase 8##NM_001166419|HDAC8|55869|histone deacetylase 8##NM_001166420|HDAC8|55869|histone deacetylase 8##NM_001166422|HDAC8|55869|histone deacetylase 8##NM_001166448|HDAC8|55869|histone deacetylase 8##NM_018486|HDAC8|55869|histone deacetylase 8##EU446822|HDAC8|55869|histone deacetylase 8##EU832800|HDAC8|55869|histone deacetylase 8##GQ129378|HDAC8|55869|histone deacetylase 8##AF245664|HDAC8|55869|histone deacetylase 8##AY429539|HDAC8|55869|histone deacetylase 8##BC050433|HDAC8|55869|histone deacetylase 8##AK300895|HDAC8|55869|histone deacetylase 8##AJ277724|HDAC8|55869|histone deacetylase 8##AK294903|HDAC8|55869|histone deacetylase 8##AF212246|HDAC8|55869|histone deacetylase 8##AK298767|HDAC8|55869|histone deacetylase 8##U65092|CITED1|4435|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1##NM_001144886|CITED1|4435|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1##X73878|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##BC104944|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##BC143499|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##BC143501|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##X73874|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##NM_001122670|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##NM_001172436|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##NM_002637|PHKA1|5255|phosphorylase kinase, alpha 1 (muscle)##NM_001080851|DMRTC1B|728656|DMRT-like family C1B##NM_033053|DMRTC1|63947|DMRT-like family C1##NM_001080851|DMRTC1B|728656|DMRT-like family C1B##NM_033053|DMRTC1|63947|DMRT-like family C1	0.999464	0.0	
chr4	170487608	170487761	reg1005983.p1	6.733	+	TSC_hg19_v1_chr4_-_170192202 NM_020870	-295464	-	AK021429 TSC_hg19_v1_chr4_-_170192108	-295577	-	TSC_hg19_v1_chr4_-_170192099 BC053671	-295637	-	BC015147 BC114491 AB067488 CR933642 AL050385 TSC_hg19_v1_chr4_-_170533735 BC068201 CR936672	45952	-	TSC_hg19_v1_chr4_-_170533762 NM_001199397 NM_001199398 NM_001199399 NM_001199400 NM_012224	46085	-	TSC_hg19_v1_chr4_+_170541683 NM_001243372 NM_001829 NM_173872	53987	+	NM_020870|SH3RF1|57630|SH3 domain containing ring finger 1##AK021429|SH3RF1|57630|SH3 domain containing ring finger 1##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1##BC015147|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC114491|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AB067488|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR933642|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AL050385|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC068201|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR936672|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199397|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199398|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199399|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199400|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_012224|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001243372|CLCN3|1182|chloride channel 3##NM_001829|CLCN3|1182|chloride channel 3##NM_173872|CLCN3|1182|chloride channel 3	0.0	0.912891	CTCF.p2:-30:0.913
chr18	39534708	39534827	reg1000162.p1	6.732	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2154499	-	TSC_hg19_v1_chr18_-_36915657 D28405	-2619111	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-4388768	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	432	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	466	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1160802	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.0	0.0	
chr3	159668418	159668581	reg1006269.p2	6.731	+	TSC_hg19_v1_chr3_+_159557745 BC005947 CU675205	-110640	+	NM_001197109 AK091871 TSC_hg19_v1_chr3_+_159557738	-110806	+	TSC_hg19_v1_chr3_+_159481881 AK309223	-186537	+	NM_000882 BC035571 BC104982 BC104984 M65291 M65271 AF180562 AB528728 AF101062	38233	+	TSC_hg19_v1_chr3_+_159943306 NM_001168214	274838	+	BC031660 TSC_hg19_v1_chr3_+_159943777	275204	+	BC005947|SCHIP1|29970|schwannomin interacting protein 1##NM_001197109|SCHIP1|29970|schwannomin interacting protein 1##AK091871|SCHIP1|29970|schwannomin interacting protein 1##AK309223|SCHIP1|29970|schwannomin interacting protein 1##NM_000882|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC035571|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC104982|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC104984|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##M65291|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##M65271|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##AF180562|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##AF101062|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##NM_001168214|C3orf80|401097|chromosome 3 open reading frame 80##BC031660|C3orf80|401097|chromosome 3 open reading frame 80	0.994149	0.0	denovo_WM_7:-27:0.535	denovo_WM_7:-28:0.459
chr8	144646537	144646656	reg1004816.p1	6.731	+	NM_024736 AY008304 BC008904 TSC_hg19_v1_chr8_+_144640515 AK303615 AK022212 AK123985 AK096216 BC069000	-6090	+	AK291817 NM_001166237	-11040	+	TSC_hg19_v1_chr8_-_144623640 NM_015117	-22964	-	TSC_hg19_v1_chr8_-_144650884 AF289596	4307	-	TSC_hg19_v1_chr8_-_144651064 AK292180	4459	-	TSC_hg19_v1_chr8_-_144654943 NM_001100878	8337	-	NM_024736|GSDMD|79792|gasdermin D##AY008304|GSDMD|79792|gasdermin D##BC008904|GSDMD|79792|gasdermin D##AK303615|GSDMD|79792|gasdermin D##AK022212|GSDMD|79792|gasdermin D##AK123985|GSDMD|79792|gasdermin D##AK096216|GSDMD|79792|gasdermin D##BC069000|GSDMD|79792|gasdermin D##AK291817|GSDMD|79792|gasdermin D##NM_001166237|GSDMD|79792|gasdermin D##NM_015117|ZC3H3|23144|zinc finger CCCH-type containing 3##AF289596|C8orf73|642475|chromosome 8 open reading frame 73##AK292180|C8orf73|642475|chromosome 8 open reading frame 73##NM_001100878|C8orf73|642475|chromosome 8 open reading frame 73	0.998892	0.0	
chr13	27913069	27913157	reg1004627.p1	6.730	+	TSC_hg19_v1_chr13_+_27844966 HQ258126	-68106	+	AY439004 NM_206827	-68650	+	TSC_hg19_v1_chr13_+_27825693 D28406 NM_000982 AK130968 AK311795 BC070185 BC070323 BC070330 BC104667 BX647669 AY320407 U25789 BC104478 L25348 U14967 BC070184 BC001603	-87371	+	BC143711 D32257 NM_002097 TSC_hg19_v1_chr13_+_27998761 AB590496 U14134 U20272	85658	+	TSC_hg19_v1_chr13_-_28024327 BC039599 NM_001166262 NM_001166261	111196	-	AF265440 TSC_hg19_v1_chr13_-_28024702 BC046166 NM_001166263 NM_152912	111609	-	HQ258126|RASL11A|387496|RAS-like, family 11, member A##AY439004|RASL11A|387496|RAS-like, family 11, member A##NM_206827|RASL11A|387496|RAS-like, family 11, member A##D28406|RPL21|6144|ribosomal protein L21##NM_000982|RPL21|6144|ribosomal protein L21##AK130968|RPL21|6144|ribosomal protein L21##AK311795|RPL21|6144|ribosomal protein L21##BC070185|RPL21|6144|ribosomal protein L21##BC070323|RPL21|6144|ribosomal protein L21##BC070330|RPL21|6144|ribosomal protein L21##BC104667|RPL21|6144|ribosomal protein L21##BX647669|RPL21|6144|ribosomal protein L21##U25789|RPL21|6144|ribosomal protein L21##BC104478|RPL21|6144|ribosomal protein L21##U14967|RPL21|6144|ribosomal protein L21##BC070184|RPL21|6144|ribosomal protein L21##BC001603|RPL21|6144|ribosomal protein L21##BC143711|GTF3A|2971|general transcription factor IIIA##D32257|GTF3A|2971|general transcription factor IIIA##NM_002097|GTF3A|2971|general transcription factor IIIA##U14134|GTF3A|2971|general transcription factor IIIA##U20272|GTF3A|2971|general transcription factor IIIA##BC039599|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166262|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166261|MTIF3|219402|mitochondrial translational initiation factor 3##BC046166|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166263|MTIF3|219402|mitochondrial translational initiation factor 3##NM_152912|MTIF3|219402|mitochondrial translational initiation factor 3	1.995033	0.0	denovo_WM_7:-35:0.612	denovo_WM_7:-36:0.329	denovo_WM_7:-50:0.286	denovo_WM_7:-51:0.569
chr6	111727379	111727559	reg1005785.p2	6.729	+	TSC_hg19_v1_chr6_+_111580568 BC036115	-146897	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	-146946	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-318674	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	76679	-	BC035823 TSC_hg19_v1_chr6_-_111804371	76884	-	AF071798 NM_002912 TSC_hg19_v1_chr6_-_111804420 AF058701	76955	-	BC036115|KIAA1919|91749|KIAA1919##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##BC035823|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF071798|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##NM_002912|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF058701|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.0	0.0	
chr15	50645504	50645654	reg1004413.p1	6.727	+	AK308833 NM_002112	-87418	-	TSC_hg19_v1_chr15_+_50474425 AK290262 NM_001159629 NM_003645 AF096290 AK222859 D88308 AK223145 BC057770 CU691220	-171089	+	TSC_hg19_v1_chr15_-_50411492 BC144298 BC144297 NM_024837	-234113	-	TSC_hg19_v1_chr15_-_50647062 BC068063 BC009935 AK000900	1490	-	TSC_hg19_v1_chr15_+_50647161 BC014238 BC004103	1581	+	TSC_hg19_v1_chr15_-_50647316 BC016910 D13316 BC050702 AK303901	1721	-	AK308833|HDC|3067|histidine decarboxylase##NM_002112|HDC|3067|histidine decarboxylase##AK290262|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_001159629|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_003645|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AF096290|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK222859|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##D88308|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK223145|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC057770|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC144298|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC144297|ATP8B4|79895|ATPase, class I, type 8B, member 4##NM_024837|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC068063|FLJ10038|55056|uncharacterized protein FLJ10038##BC009935|FLJ10038|55056|uncharacterized protein FLJ10038##AK000900|FLJ10038|55056|uncharacterized protein FLJ10038##BC014238|LOC100129387|100129387|uncharacterized LOC100129387##BC004103|LOC100129387|100129387|uncharacterized LOC100129387##BC016910|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##D13316|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##BC050702|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK303901|GABPB1|2553|GA binding protein transcription factor, beta subunit 1	0.838848	0.0	denovo_WM_7:9:0.326	denovo_WM_7:10:0.335
chr3	28193148	28193301	reg1005295.p1	6.727	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-429023	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-429431	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-667294	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	89874	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	197158	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	197337	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.98628	0.0	denovo_WM_7:-3:0.761
chr7	87574060	87574204	reg1006831.p1	6.727	+	TSC_hg19_v1_chr7_+_87563605 BC036029 BC092465 NM_004194 NM_016351 NM_021721 NM_021722 NM_021723 AK291010 BC062433 BC125118 BC125117 AF073291 AF155381 AF155382	-10549	+	AK302010 TSC_hg19_v1_chr7_+_87505937 BC022811 CU690272	-68152	+	BC036045 TSC_hg19_v1_chr7_+_87505839 AK292569 AF160249 BC014909 AF160876 BC035632 AK303175 BC047693	-68328	+	AB464235 L12387 TSC_hg19_v1_chr7_-_87849352 AK295225 BC011025 M32886	275220	-	TSC_hg19_v1_chr7_-_87849391 AK129770 AK310366 NM_003130	275273	-	TSC_hg19_v1_chr7_-_87856292 AK296601 NM_198901	282162	-	BC036029|ADAM22|53616|ADAM metallopeptidase domain 22##BC092465|ADAM22|53616|ADAM metallopeptidase domain 22##NM_004194|ADAM22|53616|ADAM metallopeptidase domain 22##NM_016351|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021721|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021722|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021723|ADAM22|53616|ADAM metallopeptidase domain 22##AK291010|ADAM22|53616|ADAM metallopeptidase domain 22##BC062433|ADAM22|53616|ADAM metallopeptidase domain 22##BC125118|ADAM22|53616|ADAM metallopeptidase domain 22##BC125117|ADAM22|53616|ADAM metallopeptidase domain 22##AF073291|ADAM22|53616|ADAM metallopeptidase domain 22##AF155381|ADAM22|53616|ADAM metallopeptidase domain 22##AF155382|ADAM22|53616|ADAM metallopeptidase domain 22##AK302010|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC022811|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC036045|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK292569|DBF4|10926|DBF4 homolog (S. cerevisiae)##AF160249|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC014909|DBF4|10926|DBF4 homolog (S. cerevisiae)##AF160876|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC035632|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK303175|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC047693|DBF4|10926|DBF4 homolog (S. cerevisiae)##L12387|SRI|6717|sorcin##AK295225|SRI|6717|sorcin##BC011025|SRI|6717|sorcin##M32886|SRI|6717|sorcin##AK129770|SRI|6717|sorcin##AK310366|SRI|6717|sorcin##NM_003130|SRI|6717|sorcin##AK296601|SRI|6717|sorcin##NM_198901|SRI|6717|sorcin	1.976769	0.0	denovo_WM_7:5:0.858	denovo_WM_7:20:0.773
chr8	29743399	29743560	reg1005568.p1	6.727	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-535409	-	AL137704 NM_057158	-537158	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-622865	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	196995	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	197093	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	209464	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.012254	0.0	
chr1	16333698	16333839	reg1006200.p2	6.726	+	AK127425 BC017946 NM_178840 CU676116	-3005	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	-31298	-	TSC_hg19_v1_chr1_+_16259065 BC172907	-74657	+	TSC_hg19_v1_chr1_-_16344539 DQ892716 DQ895966 EU176383 EU831930 EU832025 AL832181 AF155908 AJ243191 CR749298 BX537990 AK075151 AK095911 CR749419	10745	-	AK057295 NM_014424	11516	-	BC053869 NM_001042704 NM_004070 AK298285 AK225550 AK290814 S80315	14685	+	AK127425|C1orf64|149563|chromosome 1 open reading frame 64##BC017946|C1orf64|149563|chromosome 1 open reading frame 64##NM_178840|C1orf64|149563|chromosome 1 open reading frame 64##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17##DQ892716|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##DQ895966|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU176383|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU831930|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU832025|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AL832181|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AF155908|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AJ243191|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##CR749298|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##BX537990|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK075151|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK095911|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##CR749419|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK057295|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##NM_014424|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##BC053869|CLCNKA|1187|chloride channel Ka##NM_001042704|CLCNKA|1187|chloride channel Ka##NM_004070|CLCNKA|1187|chloride channel Ka##AK298285|CLCNKA|1187|chloride channel Ka##AK225550|CLCNKA|1187|chloride channel Ka##AK290814|CLCNKA|1187|chloride channel Ka##S80315|CLCNKB|1188|chloride channel Kb	0.995704	0.062598	denovo_WM_7:-15:0.456	denovo_WM_7:-16:0.456
chr14	40592335	40592464	reg1006047.p1	6.726	+	BC053537 BC068566 BC030611 NM_203301	-690738	-	TSC_hg19_v1_chr14_-_39901371 BX248772	-691042	-	TSC_hg19_v1_chr14_+_39736592 BC039017 AK315254 BC029513 BC051363 U73682	-855826	+	NM_152447 AK096627	1484368	+	AK302615 CR933626 BC039878 CR933608 AK124110 NM_032135	4384076	-	TSC_hg19_v1_chr14_+_45366532 NM_001017923 BC105030 BC105032 AF250395	4774099	+	BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##BX248772|FBXO33|254170|F-box protein 33##BC039017|CTAGE5|4253|CTAGE family, member 5##AK315254|CTAGE5|4253|CTAGE family, member 5##BC029513|CTAGE5|4253|CTAGE family, member 5##BC051363|CTAGE5|4253|CTAGE family, member 5##U73682|CTAGE5|4253|CTAGE family, member 5##NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK302615|FSCB|84075|fibrous sheath CABYR binding protein##CR933626|FSCB|84075|fibrous sheath CABYR binding protein##BC039878|FSCB|84075|fibrous sheath CABYR binding protein##CR933608|FSCB|84075|fibrous sheath CABYR binding protein##AK124110|FSCB|84075|fibrous sheath CABYR binding protein##NM_032135|FSCB|84075|fibrous sheath CABYR binding protein##NM_001017923|C14orf28|122525|chromosome 14 open reading frame 28##BC105030|C14orf28|122525|chromosome 14 open reading frame 28##BC105032|C14orf28|122525|chromosome 14 open reading frame 28##AF250395|C14orf28|122525|chromosome 14 open reading frame 28	0.0	0.0	
chr5	10579782	10579902	reg1001044.p3	6.726	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-15400	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-137690	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-137839	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	181417	-	TSC_hg19_v1_chr5_-_10761341 BC002726	181500	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	181557	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.520492	0.0	denovo_WM_7:-16:0.246	denovo_WM_7:-17:0.250
chr5	145553348	145553476	reg1006167.p2	6.725	+	U56252 TSC_hg19_v1_chr5_-_145523016	-30403	-	HQ258084 BC130586 BC130588 BC144387 BC144388 BC144389 BC144392 NM_001029869	-69501	-	TSC_hg19_v1_chr5_+_145317317 AL833297	-236044	+	TSC_hg19_v1_chr5_-_145562187 BC131798 BC110084 D84223 BC151214 AK304134 BC068041 AK293750 AK025441 AK295874 AF151026 BC105581 AK315178 BC150213	8727	-	TSC_hg19_v1_chr5_-_145562214 AB037773 BC152422	8809	-	TSC_hg19_v1_chr5_-_145562236 NM_020117	8852	-	U56252|LARS|51520|leucyl-tRNA synthetase##HQ258084|PLAC8L1|153770|PLAC8-like 1##BC130586|PLAC8L1|153770|PLAC8-like 1##BC130588|PLAC8L1|153770|PLAC8-like 1##BC144387|PLAC8L1|153770|PLAC8-like 1##BC144388|PLAC8L1|153770|PLAC8-like 1##BC144389|PLAC8L1|153770|PLAC8-like 1##BC144392|PLAC8L1|153770|PLAC8-like 1##NM_001029869|PLAC8L1|153770|PLAC8-like 1##AL833297|SH3RF2|153769|SH3 domain containing ring finger 2##BC131798|LARS|51520|leucyl-tRNA synthetase##BC110084|LARS|51520|leucyl-tRNA synthetase##D84223|LARS|51520|leucyl-tRNA synthetase##BC151214|LARS|51520|leucyl-tRNA synthetase##AK304134|LARS|51520|leucyl-tRNA synthetase##BC068041|LARS|51520|leucyl-tRNA synthetase##AK293750|LARS|51520|leucyl-tRNA synthetase##AK025441|LARS|51520|leucyl-tRNA synthetase##AK295874|LARS|51520|leucyl-tRNA synthetase##AF151026|LARS|51520|leucyl-tRNA synthetase##BC105581|LARS|51520|leucyl-tRNA synthetase##AK315178|LARS|51520|leucyl-tRNA synthetase##BC150213|LARS|51520|leucyl-tRNA synthetase##AB037773|LARS|51520|leucyl-tRNA synthetase##BC152422|LARS|51520|leucyl-tRNA synthetase##NM_020117|LARS|51520|leucyl-tRNA synthetase	0.0	0.0	
chr10	63805117	63805237	reg1005137.p1	6.724	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-143746	+	NM_032199	-144165	+	BC041932 NM_173554	-382459	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	3919	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	223362	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	328866	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.994212	0.0	denovo_WM_7:37:0.239	denovo_WM_7:38:0.239	denovo_WM_7:39:0.239	denovo_WM_7:40:0.239
chr2	231479632	231479781	reg1005336.p1	6.724	+	AK091898 NM_001206704	-198236	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-198750	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-198787	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	97840	+	TSC_hg19_v1_chr2_+_231577633 BC020570	97938	+	AK292382 NM_001130849 NM_001130850 AK315692	98572	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.989901	0.0	
chr4	87465935	87466115	reg1006033.p2	6.724	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-91702	-	NM_138980 NM_138982	-184651	-	BC022492 TSC_hg19_v1_chr4_-_87281197 BC035057	-184829	-	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	49448	+	AJ583502 BC107051 BC107052 EF437223 NM_197965	304316	-	BC016746 BC063410 NM_144645	347535	-	NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##NM_138980|MAPK10|5602|mitogen-activated protein kinase 10##NM_138982|MAPK10|5602|mitogen-activated protein kinase 10##BC022492|MAPK10|5602|mitogen-activated protein kinase 10##BC035057|MAPK10|5602|mitogen-activated protein kinase 10##AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36	0.99957	0.0	denovo_WM_7:12:0.446	denovo_WM_7:15:0.297
chr5	89735856	89736005	reg1004218.p2	6.724	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	-30391	-	AL833268 AL833274 NM_001131005 NM_001193347	-1536036	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1550666	+	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	34252	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	34648	-	NM_006467 AK295434 U93868	34772	+	BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)	1.152139	0.0	
chr11	57479706	57479854	reg1006991.p1	6.721	+	AY148462 AB463861 BC009723 BC037223 NM_153450 TSC_hg19_v1_chr11_-_57479688	-167	-	BC026967 TSC_hg19_v1_chr11_+_57435567	-44212	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	-44305	+	NM_001144012 NM_015959 TSC_hg19_v1_chr11_+_57480020	229	+	AF132965 TSC_hg19_v1_chr11_+_57480075 AF059753 BC093062 AK075359 AK312990 AY451237 AY451236 BC000666 AX810695 AK297688 AK298065 AK223058 AB002382 AY358501 AB587557 AX810717	290	+	NM_170746 BC111087 AF536829 AJ276250 TSC_hg19_v1_chr11_+_57508954 AJ276249 BC064570	29072	+	AY148462|MED19|219541|mediator complex subunit 19##BC009723|MED19|219541|mediator complex subunit 19##BC037223|MED19|219541|mediator complex subunit 19##NM_153450|MED19|219541|mediator complex subunit 19##BC026967|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_001144012|TMX2|51075|thioredoxin-related transmembrane protein 2##NM_015959|TMX2|51075|thioredoxin-related transmembrane protein 2##AF132965|TMX2|51075|thioredoxin-related transmembrane protein 2##AF059753|TMX2|51075|thioredoxin-related transmembrane protein 2##BC093062|TMX2|51075|thioredoxin-related transmembrane protein 2##AK075359|TMX2|51075|thioredoxin-related transmembrane protein 2##AK312990|TMX2|51075|thioredoxin-related transmembrane protein 2##AY451237|TMX2|51075|thioredoxin-related transmembrane protein 2##AY451236|TMX2|51075|thioredoxin-related transmembrane protein 2##BC000666|TMX2|51075|thioredoxin-related transmembrane protein 2##AK297688|TMX2|51075|thioredoxin-related transmembrane protein 2##AK298065|TMX2|51075|thioredoxin-related transmembrane protein 2##AK223058|TMX2|51075|thioredoxin-related transmembrane protein 2##AB002382|TMX2-CTNND1|100528016|TMX2-CTNND1 readthrough (non-protein coding)##AY358501|TMX2|51075|thioredoxin-related transmembrane protein 2##NM_170746|C11orf31|280636|chromosome 11 open reading frame 31##AF536829|C11orf31|280636|chromosome 11 open reading frame 31##AJ276250|C11orf31|280636|chromosome 11 open reading frame 31##AJ276249|C11orf31|280636|chromosome 11 open reading frame 31##BC064570|C11orf31|280636|chromosome 11 open reading frame 31	0.0	0.0	
chr19	2086725	2086859	reg1006155.p1	6.721	+	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	-1549	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-35559	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-40551	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	9473	-	TSC_hg19_v1_chr19_-_2096297 AL832474	9502	-	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	10068	+	AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4	0.993663	0.0	denovo_WM_7:9:0.975
chr4	42819586	42819701	reg1005557.p2	6.721	+	BC109317 AB013452 AF067820 BC109318 AB587324 TSC_hg19_v1_chr4_-_42659111 AB209687 BC020943 AK295616 NM_001105529 NM_006095	-160555	-	NM_001080505	-419788	+	AB126828 AB126829 NM_001159547 NM_207406	-664749	-	AB528853 NM_001080476	75638	+	AK298831 HQ258617 TSC_hg19_v1_chr4_-_44450559 BC132743 BC136793	1630910	-	AK123347 NM_198353	1631180	-	BC109317|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB013452|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AF067820|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC109318|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB209687|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC020943|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001105529|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_006095|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001080505|SHISA3|152573|shisa homolog 3 (Xenopus laevis)##AB126828|BEND4|389206|BEN domain containing 4##AB126829|BEND4|389206|BEN domain containing 4##NM_001159547|BEND4|389206|BEN domain containing 4##NM_207406|BEND4|389206|BEN domain containing 4##NM_001080476|GRXCR1|389207|glutaredoxin, cysteine rich 1##AK298831|KCTD8|386617|potassium channel tetramerisation domain containing 8##HQ258617|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC132743|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC136793|KCTD8|386617|potassium channel tetramerisation domain containing 8##AK123347|KCTD8|386617|potassium channel tetramerisation domain containing 8##NM_198353|KCTD8|386617|potassium channel tetramerisation domain containing 8	1.99206	0.015158	denovo_WM_7:-39:0.213	denovo_WM_7:-61:0.217
chr22	40221667	40221822	reg1005923.p1	6.720	+	AF129133 AF142567 AF211189 AF393329 NM_001003406 NM_021096	-254987	+	TSC_hg19_v1_chr22_-_39928773 CR456443 BC037573 NM_194326	-292930	-	BC047711 TSC_hg19_v1_chr22_-_39928752 AK025423	-292993	-	BC033895 NM_152512	68049	-	AY069959 NM_004810 TSC_hg19_v1_chr22_+_40297087 AK303332 AK303512 AF236119 AJ011736 BC025692 AF042380 AF102694	75380	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	75503	+	AF129133|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##AF142567|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##AF211189|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##AF393329|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##NM_001003406|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##NM_021096|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##CR456443|RPS19BP1|91582|ribosomal protein S19 binding protein 1##BC037573|RPS19BP1|91582|ribosomal protein S19 binding protein 1##NM_194326|RPS19BP1|91582|ribosomal protein S19 binding protein 1##BC047711|RPS19BP1|91582|ribosomal protein S19 binding protein 1##AK025423|RPS19BP1|91582|ribosomal protein S19 binding protein 1##BC033895|ENTHD1|150350|ENTH domain containing 1##NM_152512|ENTHD1|150350|ENTH domain containing 1##AY069959|GRAP2|9402|GRB2-related adaptor protein 2##NM_004810|GRAP2|9402|GRB2-related adaptor protein 2##AK303332|GRAP2|9402|GRB2-related adaptor protein 2##AK303512|GRAP2|9402|GRB2-related adaptor protein 2##AF236119|GRAP2|9402|GRB2-related adaptor protein 2##AJ011736|GRAP2|9402|GRB2-related adaptor protein 2##BC025692|GRAP2|9402|GRB2-related adaptor protein 2##AF042380|GRAP2|9402|GRB2-related adaptor protein 2##AF102694|GRAP2|9402|GRB2-related adaptor protein 2##AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2	0.989831	0.0	denovo_WM_7:-23:0.232	denovo_WM_7:-24:0.688
chr9	140017238	140017418	reg1003681.p1	6.720	+	NM_013379 TSC_hg19_v1_chr9_-_140009194	-8134	-	AK292112 TSC_hg19_v1_chr9_-_140009178	-8153	-	BC011907 BC016961 DQ891460 DQ894637 TSC_hg19_v1_chr9_-_140009169	-8159	-	TSC_hg19_v1_chr9_-_140024189 BC018639	6907	-	TSC_hg19_v1_chr9_+_140032795 L13266	15479	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	16450	+	NM_013379|DPP7|29952|dipeptidyl-peptidase 7##AK292112|DPP7|29952|dipeptidyl-peptidase 7##BC011907|DPP7|29952|dipeptidyl-peptidase 7##BC016961|DPP7|29952|dipeptidyl-peptidase 7##DQ891460|DPP7|29952|dipeptidyl-peptidase 7##DQ894637|DPP7|29952|dipeptidyl-peptidase 7##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1	1.254432	0.0	denovo_WM_7:55:0.233	denovo_WM_7:70:0.311
chr21	43078107	43078284	reg1006082.p1	6.718	+	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-198112	-	TSC_hg19_v1_chr21_-_42880078 AF329454 EU090249 HM245389 HM245390	-198118	-	AK291813 TSC_hg19_v1_chr21_-_42880030 AK296860 NM_001135099 BC051839 AF270487 BC035623	-198208	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	109027	-	AK027424 TSC_hg19_v1_chr21_-_43187270	109072	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	221303	-	BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AF329454|TMPRSS2|7113|transmembrane protease, serine 2##EU090249|TMPRSS2|7113|transmembrane protease, serine 2##HM245389|TMPRSS2|7113|transmembrane protease, serine 2##HM245390|TMPRSS2|7113|transmembrane protease, serine 2##AK291813|TMPRSS2|7113|transmembrane protease, serine 2##AK296860|TMPRSS2|7113|transmembrane protease, serine 2##NM_001135099|TMPRSS2|7113|transmembrane protease, serine 2##BC051839|TMPRSS2|7113|transmembrane protease, serine 2##AF270487|TMPRSS2|7113|transmembrane protease, serine 2##BC035623|TMPRSS2|7113|transmembrane protease, serine 2##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15	0.998238	0.0	
chr1	197369339	197369477	reg1006104.p1	6.717	+	NM_001193640 NM_201253 AK299368 AK289733 AK307844 AB208923 AF154671 AY043324 AY043325 BC136271 BC143726 AJ748821	-131971	+	BC132818 BC136600 AK128549 AY163816 NM_194314	-199755	-	AF509326 AY099892 AY367065 AY971955 AY971956 AY971957 BC015396 TSC_hg19_v1_chr1_-_197115800 AK226178 AK125107 NM_001206846 NM_018136	-253714	-	AK000061 TSC_hg19_v1_chr1_-_197552357	182924	-	TSC_hg19_v1_chr1_-_197744376 BC022561	374926	-	TSC_hg19_v1_chr1_-_197744396 BC063456	374988	-	NM_001193640|CRB1|23418|crumbs homolog 1 (Drosophila)##NM_201253|CRB1|23418|crumbs homolog 1 (Drosophila)##AK299368|CRB1|23418|crumbs homolog 1 (Drosophila)##AK289733|CRB1|23418|crumbs homolog 1 (Drosophila)##AK307844|CRB1|23418|crumbs homolog 1 (Drosophila)##AB208923|CRB1|23418|crumbs homolog 1 (Drosophila)##AF154671|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043324|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043325|CRB1|23418|crumbs homolog 1 (Drosophila)##BC136271|CRB1|23418|crumbs homolog 1 (Drosophila)##BC143726|CRB1|23418|crumbs homolog 1 (Drosophila)##AJ748821|CRB1|23418|crumbs homolog 1 (Drosophila)##BC132818|ZBTB41|360023|zinc finger and BTB domain containing 41##BC136600|ZBTB41|360023|zinc finger and BTB domain containing 41##AK128549|ZBTB41|360023|zinc finger and BTB domain containing 41##AY163816|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_194314|ZBTB41|360023|zinc finger and BTB domain containing 41##AF509326|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY099892|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY367065|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971955|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971956|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971957|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##BC015396|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK226178|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK125107|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_001206846|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_018136|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK000061|DENND1B|163486|DENN/MADD domain containing 1B##BC022561|DENND1B|163486|DENN/MADD domain containing 1B##BC063456|DENND1B|163486|DENN/MADD domain containing 1B	0.999894	0.936118	CTCF.p2:-39:0.936
chr9	137750121	137750235	reg1004963.p1	6.717	+	TSC_hg19_v1_chr9_+_137533714 M76729 D90279	-216368	+	TSC_hg19_v1_chr9_+_137533652 AB371583 NM_000093	-216531	+	TSC_hg19_v1_chr9_+_137218326 BC110998 X52773 AB463220 EU446653 AB307705 HQ692843	-531778	+	AK290843 BC069572 BC069825 BC113935 D49353 NM_004108 NM_015837 AK308476 AB590757	22482	+	D83920 DQ891426 DQ894436 CR749452 BC020635 AK314867 NM_002003	59579	-	NM_014279 NM_006334 TSC_hg19_v1_chr9_+_137967133	216937	+	D90279|COL5A1|1289|collagen, type V, alpha 1##AB371583|COL5A1|1289|collagen, type V, alpha 1##NM_000093|COL5A1|1289|collagen, type V, alpha 1##BC110998|RXRA|6256|retinoid X receptor, alpha##X52773|RXRA|6256|retinoid X receptor, alpha##EU446653|RXRA|6256|retinoid X receptor, alpha##AB307705|RXRA|6256|retinoid X receptor, alpha##HQ692843|RXRA|6256|retinoid X receptor, alpha##AK290843|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##BC069572|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##BC069825|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##BC113935|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##D49353|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##NM_004108|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##NM_015837|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##AK308476|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##D83920|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##DQ891426|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##DQ894436|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##CR749452|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##BC020635|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##AK314867|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##NM_002003|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##NM_014279|OLFM1|10439|olfactomedin 1##NM_006334|OLFM1|10439|olfactomedin 1	0.957512	0.0	denovo_WM_7:22:0.943
chr20	30506104	30506234	reg1006325.p1	6.716	+	TSC_hg19_v1_chr20_+_30467627 BC036213 AK303963 AK302360 AK302806	-38556	+	AK093491 AX748163 NM_001008409 BC068593 BC104024 BC104025	-47637	+	BC056911 AK097430 NM_080611	-47754	-	TSC_hg19_v1_chr20_-_30539781 BC001856 AB528566	33591	-	TSC_hg19_v1_chr20_-_30539818 BC009334 AK312021	33657	-	TSC_hg19_v1_chr20_-_30539856 NM_030815 AY286301	33702	-	BC036213|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK303963|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK302360|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK302806|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK093491|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##NM_001008409|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC068593|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC104024|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC104025|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC056911|DUSP15|128853|dual specificity phosphatase 15##AK097430|C20orf57|83747|chromosome 20 open reading frame 57##NM_080611|DUSP15|128853|dual specificity phosphatase 15##BC001856|PDRG1|81572|p53 and DNA-damage regulated 1##BC009334|PDRG1|81572|p53 and DNA-damage regulated 1##AK312021|PDRG1|81572|p53 and DNA-damage regulated 1##NM_030815|PDRG1|81572|p53 and DNA-damage regulated 1##AY286301|PDRG1|81572|p53 and DNA-damage regulated 1	0.987044	0.0	denovo_WM_7:17:0.954
chr20	43930446	43930596	reg1005762.p1	6.716	+	AF114471 X04503 AB464192 DQ891365 DQ894545 AK312192 X04470 TSC_hg19_v1_chr20_-_43883206 AX772818 BC020708 NM_003064	-47326	-	BC005262 M81652 NM_003008 AK312932 AX772816 BC056675 BC070306 AB464703	-80502	+	NM_003007 AK291811 BC005229 BC007096 BC011442 BC055416 J04440 AB591040 BT007177 CU691118	-94856	+	NM_014276 AB024964 AB026048 AB027710	5005	+	BC151219 AK074595 BC141811 AK074597 NM_003833 NM_030590 NM_030592	6421	-	CR542045 CR542074 DQ890718 DQ893898 AB464261 TSC_hg19_v1_chr20_-_43977065 X67016 AK222695 AK223243 AK303964 AK312507 BC030805 D13292 NM_002999	46534	-	AF114471|SLPI|6590|secretory leukocyte peptidase inhibitor##X04503|SLPI|6590|secretory leukocyte peptidase inhibitor##DQ891365|SLPI|6590|secretory leukocyte peptidase inhibitor##DQ894545|SLPI|6590|secretory leukocyte peptidase inhibitor##AK312192|SLPI|6590|secretory leukocyte peptidase inhibitor##X04470|SLPI|6590|secretory leukocyte peptidase inhibitor##AX772818|SLPI|6590|secretory leukocyte peptidase inhibitor##BC020708|SLPI|6590|secretory leukocyte peptidase inhibitor##NM_003064|SLPI|6590|secretory leukocyte peptidase inhibitor##BC005262|SEMG2|6407|semenogelin II##M81652|SEMG2|6407|semenogelin II##NM_003008|SEMG2|6407|semenogelin II##AK312932|SEMG2|6407|semenogelin II##BC056675|SEMG2|6407|semenogelin II##BC070306|SEMG2|6407|semenogelin II##NM_003007|SEMG1|6406|semenogelin I##BC005229|SEMG1|6406|semenogelin I##BC007096|SEMG1|6406|semenogelin I##BC011442|SEMG1|6406|semenogelin I##BC055416|SEMG1|6406|semenogelin I##J04440|SEMG1|6406|semenogelin I##BT007177|SEMG1|6406|semenogelin I##NM_014276|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB024964|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB026048|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB027710|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##BC151219|MATN4|8785|matrilin 4##AK074595|MATN4|8785|matrilin 4##BC141811|MATN4|8785|matrilin 4##AK074597|MATN4|8785|matrilin 4##NM_003833|MATN4|8785|matrilin 4##NM_030590|MATN4|8785|matrilin 4##NM_030592|MATN4|8785|matrilin 4##CR542045|SDC4|6385|syndecan 4##CR542074|SDC4|6385|syndecan 4##DQ890718|SDC4|6385|syndecan 4##DQ893898|SDC4|6385|syndecan 4##X67016|SDC4|6385|syndecan 4##AK222695|SDC4|6385|syndecan 4##AK223243|SDC4|6385|syndecan 4##AK303964|SDC4|6385|syndecan 4##AK312507|SDC4|6385|syndecan 4##BC030805|SDC4|6385|syndecan 4##D13292|SDC4|6385|syndecan 4##NM_002999|SDC4|6385|syndecan 4	0.982882	0.0	denovo_WM_7:-9:0.475
chr6	24949238	24949418	reg1006333.p1	6.716	+	TSC_hg19_v1_chr6_-_24936189 AK299047	-13145	-	AB002384 NM_014722	-38134	-	U49187 AK300138 BC001232 NM_015864	-71811	-	TSC_hg19_v1_chr6_+_25279316 BC040903	329990	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	330330	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	330566	+	AK299047|FAM65B|9750|family with sequence similarity 65, member B##AB002384|FAM65B|9750|family with sequence similarity 65, member B##NM_014722|FAM65B|9750|family with sequence similarity 65, member B##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A	0.800117	0.0	denovo_WM_7:-15:0.607
chr5	89705779	89705917	reg1001732.p2	6.714	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	-309	-	AL833268 AL833274 NM_001131005 NM_001193347	-1505954	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1520584	+	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	64334	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	64730	-	NM_006467 AK295434 U93868	64854	+	BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)	0.0	0.0	
chr8	132959714	132959868	reg1005649.p2	6.714	+	TSC_hg19_v1_chr8_+_132916408 AB385283	-43313	+	AK307433 TSC_hg19_v1_chr8_+_132916394	-43401	+	TSC_hg19_v1_chr8_+_132916379 BC108667	-43414	+	BX648595 TSC_hg19_v1_chr8_+_132991247	31418	+	AK297911 NM_001080399	111835	-	NM_001145095	157720	-	AK307433|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC108667|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BX648595|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##AK297911|OC90|729330|otoconin 90##NM_001080399|OC90|729330|otoconin 90##NM_001145095|HHLA1|10086|HERV-H LTR-associating 1	0.991472	0.0	denovo_WM_7:-7:0.557
chr9	131217901	131218079	reg1005132.p1	6.714	+	NM_153436 AK301842	-541	+	BC011811 TSC_hg19_v1_chr9_+_131191208	-26780	+	AK074519 AK074523 AF177203 TSC_hg19_v1_chr9_+_131185231	-32805	+	TSC_hg19_v1_chr9_+_131218395 NM_001242352 NM_001242353 NM_001242354 NM_002540 NM_153432 NM_153435 NM_153439 AK093367 AK301754	348	+	TSC_hg19_v1_chr9_+_131218424 AY366499	423	+	TSC_hg19_v1_chr9_+_131218430 AK302684	438	+	NM_153436|ODF2|4957|outer dense fiber of sperm tails 2##AK301842|ODF2|4957|outer dense fiber of sperm tails 2##BC011811|CERCAM|51148|cerebral endothelial cell adhesion molecule##AK074519|CERCAM|51148|cerebral endothelial cell adhesion molecule##AK074523|CERCAM|51148|cerebral endothelial cell adhesion molecule##AF177203|CERCAM|51148|cerebral endothelial cell adhesion molecule##NM_001242352|ODF2|4957|outer dense fiber of sperm tails 2##NM_001242353|ODF2|4957|outer dense fiber of sperm tails 2##NM_001242354|ODF2|4957|outer dense fiber of sperm tails 2##NM_002540|ODF2|4957|outer dense fiber of sperm tails 2##NM_153432|ODF2|4957|outer dense fiber of sperm tails 2##NM_153435|ODF2|4957|outer dense fiber of sperm tails 2##NM_153439|ODF2|4957|outer dense fiber of sperm tails 2##AK093367|ODF2|4957|outer dense fiber of sperm tails 2##AK301754|ODF2|4957|outer dense fiber of sperm tails 2##AY366499|ODF2|4957|outer dense fiber of sperm tails 2##AK302684|ODF2|4957|outer dense fiber of sperm tails 2	0.0	0.0	
chr1	151857113	151857211	reg1005208.p2	6.713	+	HQ258137 BC101610 BC112239 AK095283 NM_182578	-31055	-	AK293673 NM_001136003	-44130	-	AK298460 TSC_hg19_v1_chr1_-_151804275 AB307696 CR457436 DQ890805 DQ893960 BC031554 AK223137 AK315662 BC110571 U16997 NM_005060	-52876	-	TSC_hg19_v1_chr1_-_151881935 AK314852 AJ313515 BC017339	24765	-	TSC_hg19_v1_chr1_-_151881988 BC065277	24839	-	AK289494 NM_053055	25198	-	HQ258137|THEM5|284486|thioesterase superfamily member 5##BC101610|THEM5|284486|thioesterase superfamily member 5##BC112239|THEM5|284486|thioesterase superfamily member 5##AK095283|THEM5|284486|thioesterase superfamily member 5##NM_182578|THEM5|284486|thioesterase superfamily member 5##AK293673|C2CD4D|100191040|C2 calcium-dependent domain containing 4D##NM_001136003|C2CD4D|100191040|C2 calcium-dependent domain containing 4D##AK298460|RORC|6097|RAR-related orphan receptor C##AB307696|RORC|6097|RAR-related orphan receptor C##CR457436|RORC|6097|RAR-related orphan receptor C##DQ890805|RORC|6097|RAR-related orphan receptor C##DQ893960|RORC|6097|RAR-related orphan receptor C##BC031554|RORC|6097|RAR-related orphan receptor C##AK223137|RORC|6097|RAR-related orphan receptor C##AK315662|RORC|6097|RAR-related orphan receptor C##BC110571|RORC|6097|RAR-related orphan receptor C##U16997|RORC|6097|RAR-related orphan receptor C##NM_005060|RORC|6097|RAR-related orphan receptor C##AK314852|THEM4|117145|thioesterase superfamily member 4##AJ313515|THEM4|117145|thioesterase superfamily member 4##BC017339|THEM4|117145|thioesterase superfamily member 4##BC065277|THEM4|117145|thioesterase superfamily member 4##AK289494|THEM4|117145|thioesterase superfamily member 4##NM_053055|THEM4|117145|thioesterase superfamily member 4	1.532641	0.0	denovo_WM_7:3:0.391	denovo_WM_7:-35:0.274
chr22	40268737	40268917	reg1006324.p1	6.712	+	AF129133 AF142567 AF211189 AF393329 NM_001003406 NM_021096	-302070	+	TSC_hg19_v1_chr22_-_39928773 CR456443 BC037573 NM_194326	-340013	-	BC047711 TSC_hg19_v1_chr22_-_39928752 AK025423	-340076	-	BC033895 NM_152512	20966	-	AY069959 NM_004810 TSC_hg19_v1_chr22_+_40297087 AK303332 AK303512 AF236119 AJ011736 BC025692 AF042380 AF102694	28297	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	28420	+	AF129133|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##AF142567|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##AF211189|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##AF393329|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##NM_001003406|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##NM_021096|CACNA1I|8911|calcium channel, voltage-dependent, T type, alpha 1I subunit##CR456443|RPS19BP1|91582|ribosomal protein S19 binding protein 1##BC037573|RPS19BP1|91582|ribosomal protein S19 binding protein 1##NM_194326|RPS19BP1|91582|ribosomal protein S19 binding protein 1##BC047711|RPS19BP1|91582|ribosomal protein S19 binding protein 1##AK025423|RPS19BP1|91582|ribosomal protein S19 binding protein 1##BC033895|ENTHD1|150350|ENTH domain containing 1##NM_152512|ENTHD1|150350|ENTH domain containing 1##AY069959|GRAP2|9402|GRB2-related adaptor protein 2##NM_004810|GRAP2|9402|GRB2-related adaptor protein 2##AK303332|GRAP2|9402|GRB2-related adaptor protein 2##AK303512|GRAP2|9402|GRB2-related adaptor protein 2##AF236119|GRAP2|9402|GRB2-related adaptor protein 2##AJ011736|GRAP2|9402|GRB2-related adaptor protein 2##BC025692|GRAP2|9402|GRB2-related adaptor protein 2##AF042380|GRAP2|9402|GRB2-related adaptor protein 2##AF102694|GRAP2|9402|GRB2-related adaptor protein 2##AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2	0.999653	0.0	denovo_WM_7:35:0.425	denovo_WM_7:36:0.425
chr8	96127702	96127824	reg1006036.p2	6.712	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	-90459	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-166106	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-220311	-	TSC_hg19_v1_chr8_+_96145948 NM_024613	18182	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	18245	+	TSC_hg19_v1_chr8_+_96146116 AK023249	18373	+	NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.986246	0.0	denovo_WM_7:-8:0.242	denovo_WM_7:-9:0.650
chr7	25917467	25917609	reg1005524.p2	6.711	+	AB040290 AF330057 AF440392 NM_022150	-649458	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-697667	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	-752598	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	274395	+	TSC_hg19_v1_chr7_-_26232151 BX538099	314613	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	322803	-	AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.989937	0.0	denovo_WM_7:-19:0.611
chr8	126166942	126167099	reg1005466.p2	6.711	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-62923	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-62963	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-62998	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	275559	+	TSC_hg19_v1_chr8_-_126963395 BX648371	796393	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1403535	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.0	0.0	
chr8	72809468	72809612	reg1005767.p2	6.711	+	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-52832	-	AF060154 TSC_hg19_v1_chr8_-_72756646	-52912	-	TSC_hg19_v1_chr8_-_72756449 AF087036 AB463900 BT007169	-53101	-	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	178294	-	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	640103	+	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	1111572	+	AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##AF060154|MSC|9242|musculin##AF087036|MSC|9242|musculin##BT007169|MSC|9242|musculin##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1	1.863604	0.0	denovo_WM_7:-47:0.781	denovo_WM_7:-62:0.902
chr20	5627908	5628010	reg1002390.p5	6.710	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-36372	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-332923	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-520264	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	103107	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	264167	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	303164	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.967944	0.0	denovo_WM_7:-50:0.718	denovo_WM_7:-51:0.250
chr9	140045034	140045214	reg1002633.p2	6.710	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	-11346	+	TSC_hg19_v1_chr9_+_140032795 L13266	-12317	+	TSC_hg19_v1_chr9_-_140024189 BC018639	-20889	-	TSC_hg19_v1_chr9_-_140063880 EU588721	18758	-	DQ355157 BC140911 TSC_hg19_v1_chr9_-_140064504 NM_001013653	19341	-	AF191337 DQ890852 DQ894007 BC032503 AK296204 TSC_hg19_v1_chr9_-_140083009	37872	-	NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##DQ355157|LRRC26|389816|leucine rich repeat containing 26##BC140911|LRRC26|389816|leucine rich repeat containing 26##NM_001013653|LRRC26|389816|leucine rich repeat containing 26##AF191337|ANAPC2|29882|anaphase promoting complex subunit 2##DQ890852|ANAPC2|29882|anaphase promoting complex subunit 2##DQ894007|ANAPC2|29882|anaphase promoting complex subunit 2##BC032503|ANAPC2|29882|anaphase promoting complex subunit 2##AK296204|ANAPC2|29882|anaphase promoting complex subunit 2	0.0	0.0	
chr8	95218374	95218496	reg1005864.p2	6.709	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	-288400	+	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	-289255	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-451321	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	2359	-	AK312873 NM_001144663	11095	-	U10550 TSC_hg19_v1_chr8_-_95274525	56087	-	NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK312873|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_001144663|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##U10550|GEM|2669|GTP binding protein overexpressed in skeletal muscle	0.932295	0.0	denovo_WM_7:-32:0.919
chr9	139895000	139895180	reg1004035.p2	6.709	+	AF102166 TSC_hg19_v1_chr9_-_139891017 BC007012 NM_004669	-4087	-	TSC_hg19_v1_chr9_+_139886873 BC002613 NM_183241 CU678068 BC038191	-8198	+	AK127160 NM_207510	-17646	+	BC008755 TSC_hg19_v1_chr9_-_139907635	12539	-	AK124899 NM_207511	26825	+	AB384556 AF327657 BC029282 BC064542 BC090860 TSC_hg19_v1_chr9_-_139922684 AK308738 AF178941	27549	-	AF102166|CLIC3|9022|chloride intracellular channel 3##BC007012|CLIC3|9022|chloride intracellular channel 3##NM_004669|CLIC3|9022|chloride intracellular channel 3##BC002613|C9orf142|286257|chromosome 9 open reading frame 142##NM_183241|C9orf142|286257|chromosome 9 open reading frame 142##BC038191|C9orf142|286257|chromosome 9 open reading frame 142##AK127160|LCNL1|401562|lipocalin-like 1##NM_207510|LCNL1|401562|lipocalin-like 1##BC008755|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##AK124899|C9orf139|401563|chromosome 9 open reading frame 139##NM_207511|C9orf139|401563|chromosome 9 open reading frame 139##AF327657|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##BC029282|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##BC064542|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##BC090860|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##AK308738|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##AF178941|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2	1.737175	0.0	denovo_WM_7:41:0.517	denovo_WM_7:56:0.536
chrX	1655061	1655202	reg1005463.p2	6.709	+	AK301844 NM_001173473	-82480	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-83330	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-144162	-	BC043610 GQ280263 NM_178129 AK126147	907	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	55398	+	NM_004043 U11090	59216	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.984006	0.0	denovo_WM_7:30:0.498
chr22	32048978	32049128	reg1005743.p1	6.708	+	TSC_hg19_v1_chr22_-_32026821 BC001482 NM_014338	-22221	-	BC033613 TSC_hg19_v1_chr22_+_32010180	-38887	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	-156507	+	TSC_hg19_v1_chr22_-_32058202 AB528208 CU013140 CU013428 CR456540 DQ656048	9155	-	NM_173566 TSC_hg19_v1_chr22_-_32146119	97075	-	NM_001242897 TSC_hg19_v1_chr22_+_32149953	100895	+	BC001482|PISD|23761|phosphatidylserine decarboxylase##NM_014338|PISD|23761|phosphatidylserine decarboxylase##BC033613|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##CU013140|PISD|23761|phosphatidylserine decarboxylase##CU013428|PISD|23761|phosphatidylserine decarboxylase##CR456540|PISD|23761|phosphatidylserine decarboxylase##NM_173566|PRR14L|253143|proline rich 14-like##NM_001242897|DEPDC5|9681|DEP domain containing 5	0.998178	0.0	
chr4	122796864	122797001	reg1002344.p1	6.708	+	AB528453 CU689486 DQ890888 DQ896810 BC032691 AF521643 AF521644 AK001577 AK309803 AK308076 NM_018190 NM_176824	-5373	-	TSC_hg19_v1_chr4_-_122745039 BC021067 AK291931 NM_001237	-51891	-	CR407692 TSC_hg19_v1_chr4_-_122744913 BC104783 BC104787 X51688	-52081	-	AB255423 AB255424 BC093682 BC093684 BC143239 NM_003305	57297	-	AY865574 NM_001130698	75976	-	DQ335469 NM_015312	294825	+	DQ890888|BBS7|55212|Bardet-Biedl syndrome 7##DQ896810|BBS7|55212|Bardet-Biedl syndrome 7##BC032691|BBS7|55212|Bardet-Biedl syndrome 7##AF521643|BBS7|55212|Bardet-Biedl syndrome 7##AF521644|BBS7|55212|Bardet-Biedl syndrome 7##AK001577|BBS7|55212|Bardet-Biedl syndrome 7##AK309803|BBS7|55212|Bardet-Biedl syndrome 7##AK308076|BBS7|55212|Bardet-Biedl syndrome 7##NM_018190|BBS7|55212|Bardet-Biedl syndrome 7##NM_176824|BBS7|55212|Bardet-Biedl syndrome 7##AK291931|CCNA2|890|cyclin A2##NM_001237|CCNA2|890|cyclin A2##CR407692|CCNA2|890|cyclin A2##BC104783|CCNA2|890|cyclin A2##BC104787|CCNA2|890|cyclin A2##X51688|CCNA2|890|cyclin A2##AB255423|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##AB255424|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC093682|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC093684|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC143239|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_003305|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##AY865574|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_001130698|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##DQ335469|KIAA1109|84162|KIAA1109##NM_015312|KIAA1109|84162|KIAA1109	0.0	0.0	
chr5	118703289	118703469	reg1004877.p1	6.708	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	-11641	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	-11761	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-98862	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	84817	+	AF427126 AY692447 NM_001163991 NM_182761 BC040622 BC128242 BC128243	261937	+	BC011941 TSC_hg19_v1_chr5_-_119740564	1037171	-	AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AF427126|FAM170A|340069|family with sequence similarity 170, member A##AY692447|FAM170A|340069|family with sequence similarity 170, member A##NM_001163991|FAM170A|340069|family with sequence similarity 170, member A##NM_182761|FAM170A|340069|family with sequence similarity 170, member A##BC040622|FAM170A|340069|family with sequence similarity 170, member A##BC128242|FAM170A|340069|family with sequence similarity 170, member A##BC128243|FAM170A|340069|family with sequence similarity 170, member A	0.0	0.0	
chr6	74364123	74364279	reg1005733.p2	6.708	+	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	-421	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	-571	-	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-133455	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	41364	+	TSC_hg19_v1_chr6_+_74405809 AF410459 AK313636	41595	+	TSC_hg19_v1_chr6_+_74405882 AK095888	41670	+	BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule##AF410459|CD109|135228|CD109 molecule##AK313636|CD109|135228|CD109 molecule##AK095888|CD109|135228|CD109 molecule	0.996121	0.0	
chrX	13683940	13684097	reg1005064.p1	6.708	+	AK291271 AK315599 NM_152634 AK294465	-12752	+	NM_001167890 NM_015507 AK075214 AK300236 AJ245671 AF193055 AF186084 AK300137 AK315018 AY358333 BC038587 AL117610 CU691592 DQ890938	-96182	+	TSC_hg19_v1_chrX_-_13397507 D28370	-286513	-	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	23223	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	23275	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	68690	-	AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_001167890|EGFL6|25975|EGF-like-domain, multiple 6##NM_015507|EGFL6|25975|EGF-like-domain, multiple 6##AK075214|EGFL6|25975|EGF-like-domain, multiple 6##AK300236|EGFL6|25975|EGF-like-domain, multiple 6##AJ245671|EGFL6|25975|EGF-like-domain, multiple 6##AF193055|EGFL6|25975|EGF-like-domain, multiple 6##AF186084|EGFL6|25975|EGF-like-domain, multiple 6##AK300137|EGFL6|25975|EGF-like-domain, multiple 6##AK315018|EGFL6|25975|EGF-like-domain, multiple 6##AY358333|EGFL6|25975|EGF-like-domain, multiple 6##BC038587|EGFL6|25975|EGF-like-domain, multiple 6##AL117610|EGFL6|25975|EGF-like-domain, multiple 6##DQ890938|EGFL6|25975|EGF-like-domain, multiple 6##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2	2.647929	0.0	denovo_WM_7:56:0.692	denovo_WM_7:71:0.692	denovo_WM_7:86:0.699
chrY	1605061	1605202	reg1005464.p2	6.708	+	AK301844 NM_001173473	-82480	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-83330	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-144162	-	BC043610 GQ280263 NM_178129 AK126147	907	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	55398	+	NM_004043 U11090	59216	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.984006	0.0	denovo_WM_7:30:0.498
chr1	211509252	211509396	reg1007098.p1	6.707	+	TSC_hg19_v1_chr1_+_211500174 AK295766 AK303286 AB000509	-9137	+	NM_001033910 TSC_hg19_v1_chr1_+_211500158	-9171	+	BC032830 NM_004619	-9368	+	BC029600 NM_145759	10381	+	TSC_hg19_v1_chr1_+_211556144 AK130858	46823	+	TSC_hg19_v1_chr1_+_211556168 BC005997	46844	+	AK295766|TRAF5|7188|TNF receptor-associated factor 5##AK303286|TRAF5|7188|TNF receptor-associated factor 5##AB000509|TRAF5|7188|TNF receptor-associated factor 5##NM_001033910|TRAF5|7188|TNF receptor-associated factor 5##BC032830|TRAF5|7188|TNF receptor-associated factor 5##NM_004619|TRAF5|7188|TNF receptor-associated factor 5##BC029600|TRAF5|7188|TNF receptor-associated factor 5##NM_145759|TRAF5|7188|TNF receptor-associated factor 5##AK130858|LINC00467|84791|long intergenic non-protein coding RNA 467##BC005997|LINC00467|84791|long intergenic non-protein coding RNA 467	0.077866	0.0	
chr15	42783511	42783667	reg1000050.p2	6.707	+	TSC_hg19_v1_chr15_-_42783322 AK226132 BX649141 AK302735	-265	-	AL831983 BC029366 BC070244 AF205632 BC058023 BC111396 NM_022473 TSC_hg19_v1_chr15_-_42749731 AK294529 AK091929 AX747260	-33852	-	BC107791 BC004883 NM_173089 NM_173090 BC067126 BC003521 BC100782 BC100783 BC100784 BC128605 BC007810	-86597	+	AK290152 AK315279 NM_003825 NM_130798	3891	+	U55936 TSC_hg19_v1_chr15_+_42787875 BC022890 BC003686 AK313161 BC000148 AJ011915	4278	+	BX538324 TSC_hg19_v1_chr15_-_42840973 BC051262 BC058935 AK094131 CR749223 AK309861	57361	-	AK226132|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK302735|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AL831983|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC029366|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC070244|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AF205632|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC058023|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC111396|ZFP106|64397|zinc finger protein 106 homolog (mouse)##NM_022473|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK294529|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK091929|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC107791|CAPN3|825|calpain 3, (p94)##BC004883|CAPN3|825|calpain 3, (p94)##NM_173089|CAPN3|825|calpain 3, (p94)##NM_173090|CAPN3|825|calpain 3, (p94)##BC067126|CAPN3|825|calpain 3, (p94)##BC003521|CAPN3|825|calpain 3, (p94)##BC100782|CAPN3|825|calpain 3, (p94)##BC100783|CAPN3|825|calpain 3, (p94)##BC100784|CAPN3|825|calpain 3, (p94)##BC128605|CAPN3|825|calpain 3, (p94)##BC007810|CAPN3|825|calpain 3, (p94)##AK290152|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK315279|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_003825|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_130798|SNAP23|8773|synaptosomal-associated protein, 23kDa##U55936|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC022890|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC003686|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK313161|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC000148|SNAP23|8773|synaptosomal-associated protein, 23kDa##AJ011915|SNAP23|8773|synaptosomal-associated protein, 23kDa##BX538324|LRRC57|255252|leucine rich repeat containing 57##BC051262|LRRC57|255252|leucine rich repeat containing 57##BC058935|LRRC57|255252|leucine rich repeat containing 57##AK094131|LRRC57|255252|leucine rich repeat containing 57##CR749223|LRRC57|255252|leucine rich repeat containing 57##AK309861|LRRC57|255252|leucine rich repeat containing 57	0.0	0.0	
chr3	152858713	152858824	reg1005972.p1	6.706	+	NM_002563 Z49205	-306033	+	AY358260 NM_001123228	-799990	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-841575	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	21258	+	TSC_hg19_v1_chr3_+_152880058 BC012362	21280	+	AF086445 NM_001101337	343515	+	NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family##AF086445|C3orf79|152118|chromosome 3 open reading frame 79##NM_001101337|C3orf79|152118|chromosome 3 open reading frame 79	0.979628	0.0	denovo_WM_7:57:0.486	denovo_WM_7:59:0.426
chr12	26882099	26882239	reg1004457.p1	6.705	+	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-533584	+	NM_001135823 AK092925 TSC_hg19_v1_chr12_+_26348312	-533878	+	TSC_hg19_v1_chr12_-_26277832 AY665467 AK303677 AB044088 BC025968 NM_030762	-604248	-	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	103911	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	208740	-	TSC_hg19_v1_chr12_-_27091213 NM_018164	209061	-	AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_001135823|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK092925|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AY665467|BHLHE41|79365|basic helix-loop-helix family, member e41##AK303677|BHLHE41|79365|basic helix-loop-helix family, member e41##AB044088|BHLHE41|79365|basic helix-loop-helix family, member e41##BC025968|BHLHE41|79365|basic helix-loop-helix family, member e41##NM_030762|BHLHE41|79365|basic helix-loop-helix family, member e41##AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)	0.0	0.0	
chr15	59596073	59596232	reg1007255.p1	6.705	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-97100	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-198781	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-237074	+	AB290177 TSC_hg19_v1_chr15_-_59665055	68902	-	TSC_hg19_v1_chr15_-_59665065 AK291688	68914	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	68918	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	1.200818	0.0	denovo_WM_7:37:0.207	denovo_WM_7:38:0.231	denovo_WM_7:39:0.235	denovo_WM_7:40:0.235
chr1	185346035	185346178	reg1004899.p2	6.704	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-59636	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-59787	-	TSC_hg19_v1_chr1_+_185126418 AK291443	-219710	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	357470	+	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	919301	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	998151	-	NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##AK291443|SWT1|54823|SWT1 RNA endoribonuclease homolog (S. cerevisiae)##AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)	1.05356	0.0	denovo_WM_7:-28:0.311
chr17	1108119	1108247	reg1004787.p1	6.703	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-17595	-	AK302682 AB384846 TSC_hg19_v1_chr17_-_1083048 NM_021962 U01147	-25114	-	TSC_hg19_v1_chr17_-_1029059 AK307827	-79109	-	NM_001164405	65674	+	AB090231 NM_172367 BC142615	74781	+	TSC_hg19_v1_chr17_-_1248347 L13388	140173	-	AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##AK302682|ABR|29|active BCR-related gene##NM_021962|ABR|29|active BCR-related gene##U01147|ABR|29|active BCR-related gene##AK307827|ABR|29|active BCR-related gene##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	2.170827	0.0	denovo_WM_7:3:0.423	denovo_WM_7:9:0.333	denovo_WM_7:24:0.273	denovo_WM_7:25:0.280
chr3	121982888	121983029	reg1005423.p1	6.703	+	NM_001178065 U20760	-79778	+	NM_000388 U20759	-80429	+	NM_006889 NM_176892 U04343	-186236	+	NM_005213 AK291308 BC010379 X05978 CR456914	61116	+	BC019231 BC109378 TSC_hg19_v1_chr3_-_122102079 BC054051 BC062725 NM_001017928	119119	-	NM_014367 AK026030 BC010896 BC015060 AF201944 AF107495 AF250321 TSC_hg19_v1_chr3_+_122103076 AK293994 AF191020	120110	+	NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule##NM_005213|CSTA|1475|cystatin A (stefin A)##AK291308|CSTA|1475|cystatin A (stefin A)##BC010379|CSTA|1475|cystatin A (stefin A)##X05978|CSTA|1475|cystatin A (stefin A)##CR456914|CSTA|1475|cystatin A (stefin A)##BC109378|CCDC58|131076|coiled-coil domain containing 58##BC054051|CCDC58|131076|coiled-coil domain containing 58##BC062725|CCDC58|131076|coiled-coil domain containing 58##NM_001017928|CCDC58|131076|coiled-coil domain containing 58##NM_014367|FAM162A|26355|family with sequence similarity 162, member A##AK026030|FAM162A|26355|family with sequence similarity 162, member A##BC010896|FAM162A|26355|family with sequence similarity 162, member A##BC015060|FAM162A|26355|family with sequence similarity 162, member A##AF201944|FAM162A|26355|family with sequence similarity 162, member A##AF107495|FAM162A|26355|family with sequence similarity 162, member A##AF250321|FAM162A|26355|family with sequence similarity 162, member A##AK293994|FAM162A|26355|family with sequence similarity 162, member A##AF191020|FAM162A|26355|family with sequence similarity 162, member A	1.003881	0.0	denovo_WM_7:2:0.594	denovo_WM_7:3:0.400
chr16	88869333	88869480	reg1004630.p2	6.702	+	NM_001142864 AB384448 TSC_hg19_v1_chr16_-_88851456	-17988	-	TSC_hg19_v1_chr16_+_88772910 BC121805 BC125269 NM_001012759 NM_001012762 BC157881 AK299521 BC108659 BC021056 BC063512 BC080540	-96483	+	TSC_hg19_v1_chr16_-_88772809 NM_178841	-96584	-	AB053172 NM_030928 TSC_hg19_v1_chr16_+_88870207	791	+	TSC_hg19_v1_chr16_+_88870215 AF321125 BC000137 BC009410 BC008860 BC008676	874	+	TSC_hg19_v1_chr16_-_88878337 BC107151 CR749423 NM_000485 NM_001030018	8929	-	NM_001142864|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##AB384448|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##BC121805|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC125269|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012759|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012762|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC157881|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##AK299521|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC108659|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC021056|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC063512|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC080540|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_178841|RNF166|115992|ring finger protein 166##AB053172|CDT1|81620|chromatin licensing and DNA replication factor 1##NM_030928|CDT1|81620|chromatin licensing and DNA replication factor 1##AF321125|CDT1|81620|chromatin licensing and DNA replication factor 1##BC000137|CDT1|81620|chromatin licensing and DNA replication factor 1##BC009410|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008860|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008676|CDT1|81620|chromatin licensing and DNA replication factor 1##BC107151|APRT|353|adenine phosphoribosyltransferase##CR749423|APRT|353|adenine phosphoribosyltransferase##NM_000485|APRT|353|adenine phosphoribosyltransferase##NM_001030018|APRT|353|adenine phosphoribosyltransferase	0.992338	0.0	denovo_WM_7:56:0.496	denovo_WM_7:57:0.496
chr7	138610611	138610742	reg1005349.p1	6.702	+	BC109304 BC109305 AF245517 AK292945 NM_020632 NM_130840	-127782	-	BC131697 AK055841 NM_001085429 BC058028	-127953	+	NM_130841	-151895	-	TSC_hg19_v1_chr7_-_138666114 AM989468 AM989469 AM989472 AM989473 AM989474 NM_001164665 NM_020910	55557	-	TSC_hg19_v1_chr7_-_138720787 BC008842 NM_080660 BC020784	110158	-	AK055851 BX647974 TSC_hg19_v1_chr7_-_138794101	183425	-	BC109304|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##BC109305|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AF245517|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK292945|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_020632|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_130840|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##BC131697|TMEM213|155006|transmembrane protein 213##AK055841|TMEM213|155006|transmembrane protein 213##NM_001085429|TMEM213|155006|transmembrane protein 213##BC058028|TMEM213|155006|transmembrane protein 213##NM_130841|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AM989468|KIAA1549|57670|KIAA1549##AM989469|KIAA1549|57670|KIAA1549##NM_001164665|KIAA1549|57670|KIAA1549##NM_020910|KIAA1549|57670|KIAA1549##BC008842|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##NM_080660|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##BC020784|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##AK055851|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX647974|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1	1.986749	0.0	denovo_WM_7:-77:0.540	denovo_WM_7:-78:0.270	denovo_WM_7:-92:0.329	denovo_WM_7:-93:0.599
chrX	114877396	114877490	reg1005809.p1	6.702	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-49575	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-80401	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-81837	+	BC003645 TSC_hg19_v1_chrX_-_115085443	207996	-	AK313927 NM_000686 X87723 U16957	424552	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	690324	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.912914	CTCF.p2:-7:0.913
chr1	84899521	84899699	reg1004764.p1	6.701	+	AF333389 NM_058248 BC080621 BC065182	-25519	+	AF274571 NM_021233 BC126136 BC126138 HQ258219	-35374	+	BC037973 NM_001134664	-131277	+	NM_025065 TSC_hg19_v1_chr1_+_84944949 AK022537 BC016051 CU677559 AF322053	45340	+	AF493873 BT006823 TSC_hg19_v1_chr1_-_84971803 AF038955	72187	-	TSC_hg19_v1_chr1_-_84971851 BC003563	72250	-	AF333389|DNASE2B|58511|deoxyribonuclease II beta##NM_058248|DNASE2B|58511|deoxyribonuclease II beta##BC080621|DNASE2B|58511|deoxyribonuclease II beta##BC065182|DNASE2B|58511|deoxyribonuclease II beta##AF274571|DNASE2B|58511|deoxyribonuclease II beta##NM_021233|DNASE2B|58511|deoxyribonuclease II beta##BC126136|DNASE2B|58511|deoxyribonuclease II beta##BC126138|DNASE2B|58511|deoxyribonuclease II beta##HQ258219|DNASE2B|58511|deoxyribonuclease II beta##BC037973|SAMD13|148418|sterile alpha motif domain containing 13##NM_001134664|SAMD13|148418|sterile alpha motif domain containing 13##NM_025065|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##AK022537|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##BC016051|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##AF322053|RPF1|80135|ribosome production factor 1 homolog (S. cerevisiae)##AF493873|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##BT006823|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##AF038955|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##BC003563|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5	0.019228	0.501595	CTCF.p2:58:0.502
chr17	63038466	63038575	reg1006217.p1	6.700	+	TSC_hg19_v1_chr17_-_63009302 AK026902	-29214	-	TSC_hg19_v1_chr17_-_62971685 BX537538 AK056627 BC063466 AK311317	-66900	-	TSC_hg19_v1_chr17_-_62915587 AK294371	-122924	-	TSC_hg19_v1_chr17_-_63052724 AB528470 AF493902 CU691408 DQ893572 DQ894448 AK313672	14198	-	TSC_hg19_v1_chr17_-_63052756 L22075 BC036756	14240	-	BC011925 TSC_hg19_v1_chr17_-_63052851	14313	-	AK026902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BX537538|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK056627|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##BC063466|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK311317|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AF493902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ893572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ894448|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AK313672|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##L22075|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC036756|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13	0.997753	0.0	denovo_WM_7:-35:0.310	denovo_WM_7:-36:0.310	denovo_WM_7:-37:0.310
chr19	1185466	1185614	reg1004853.p1	6.700	+	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	-11261	-	TSC_hg19_v1_chr19_-_1174260 AB023180	-11281	-	TSC_hg19_v1_chr19_-_1174256 BC052799	-11312	-	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	20266	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	21151	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	21633	+	AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2	0.981954	0.0	denovo_WM_7:-13:0.327	denovo_WM_7:-14:0.327	denovo_WM_7:-15:0.327
chr19	14143158	14143288	reg1001484.p1	6.700	+	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-576	+	AF265242 AY358876 TSC_hg19_v1_chr19_+_14142572	-638	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	-709	+	NM_001145028	26747	-	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	58053	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	81831	-	BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF265242|IL27RA|9466|interleukin 27 receptor, alpha##AY358876|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha##NM_001145028|PALM3|342979|paralemmin 3##AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.0	0.011513	
chr22	45683952	45684104	reg1005199.p1	6.700	+	TSC_hg19_v1_chr22_+_45680833 AF085808 BC069544 NM_001167574 NM_006953 BC108900 CR456608 AB010637 AB528272 CU013204 CU013492	-3168	+	TSC_hg19_v1_chr22_-_45636776 AK094937	-47254	-	CU012960 CU013248 CR456402 TSC_hg19_v1_chr22_-_45636622 NM_001009880	-47412	-	TSC_hg19_v1_chr22_+_45704858 AK125027 NM_001104595	20922	+	TSC_hg19_v1_chr22_+_45705838 NM_017911 AK000642	21786	+	TSC_hg19_v1_chr22_+_45705966 BC013696	21968	+	AF085808|UPK3A|7380|uroplakin 3A##BC069544|UPK3A|7380|uroplakin 3A##NM_001167574|UPK3A|7380|uroplakin 3A##NM_006953|UPK3A|7380|uroplakin 3A##BC108900|UPK3A|7380|uroplakin 3A##CR456608|UPK3A|7380|uroplakin 3A##AB010637|UPK3A|7380|uroplakin 3A##CU013204|UPK3A|7380|uroplakin 3A##CU013492|UPK3A|7380|uroplakin 3A##AK094937|KIAA0930|23313|KIAA0930##CU012960|KIAA0930|23313|KIAA0930##CU013248|KIAA0930|23313|KIAA0930##CR456402|KIAA0930|23313|KIAA0930##NM_001009880|KIAA0930|23313|KIAA0930##AK125027|FAM118A|55007|family with sequence similarity 118, member A##NM_001104595|FAM118A|55007|family with sequence similarity 118, member A##NM_017911|FAM118A|55007|family with sequence similarity 118, member A##AK000642|FAM118A|55007|family with sequence similarity 118, member A##BC013696|FAM118A|55007|family with sequence similarity 118, member A	0.871275	0.0	denovo_WM_7:58:0.249	denovo_WM_7:60:0.518
chr17	80503890	80504022	reg1006481.p1	6.699	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-26366	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-87314	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-87393	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	102327	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	152578	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	170650	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	1.022594	0.0	
chr5	88169429	88169588	reg1005877.p2	6.699	+	AB384888 EU446634 EU832832 FM163484 FM180475 GQ129219 GQ129221 GQ129392 GQ129393 NM_001193348 NM_001193349	-49835	-	TSC_hg19_v1_chr5_-_87980643 AK125167	-188801	-	AK311230 TSC_hg19_v1_chr5_-_87969144 AK309800 AK308694 BC036480	-200363	-	TSC_hg19_v1_chr5_-_88179002 AK312472 L08895 AK307883 BC026341	9498	-	TSC_hg19_v1_chr5_-_88179279 NM_001193350 NM_002397	9777	-	TSC_hg19_v1_chr5_+_88185094 AL050132	15612	+	EU446634|MEF2C|4208|myocyte enhancer factor 2C##EU832832|MEF2C|4208|myocyte enhancer factor 2C##FM163484|MEF2C|4208|myocyte enhancer factor 2C##FM180475|MEF2C|4208|myocyte enhancer factor 2C##GQ129219|MEF2C|4208|myocyte enhancer factor 2C##GQ129221|MEF2C|4208|myocyte enhancer factor 2C##GQ129392|MEF2C|4208|myocyte enhancer factor 2C##GQ129393|MEF2C|4208|myocyte enhancer factor 2C##NM_001193348|MEF2C|4208|myocyte enhancer factor 2C##NM_001193349|MEF2C|4208|myocyte enhancer factor 2C##AK311230|LINC00461|645323|long intergenic non-protein coding RNA 461##AK309800|LINC00461|645323|long intergenic non-protein coding RNA 461##AK308694|LINC00461|645323|long intergenic non-protein coding RNA 461##BC036480|LINC00461|645323|long intergenic non-protein coding RNA 461##AK312472|MEF2C|4208|myocyte enhancer factor 2C##L08895|MEF2C|4208|myocyte enhancer factor 2C##AK307883|MEF2C|4208|myocyte enhancer factor 2C##BC026341|MEF2C|4208|myocyte enhancer factor 2C##NM_001193350|MEF2C|4208|myocyte enhancer factor 2C##NM_002397|MEF2C|4208|myocyte enhancer factor 2C	2.032957	0.0	denovo_WM_7:25:0.955	denovo_WM_7:40:0.974
chr5	76017125	76017269	reg1006187.p2	6.698	+	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	-5241	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	-98052	-	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	-318081	+	NM_005242 BC018130 TSC_hg19_v1_chr5_+_76114854 U34038	97655	+	TSC_hg19_v1_chr5_+_76114883 BC012453 AY336105 BT009856 CU676194 CU680330 DQ890966 DQ894139	97747	+	BC022320 NM_130772	128628	+	AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_005242|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC018130|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##U34038|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC012453|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##AY336105|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BT009856|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ890966|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ894139|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC022320|S100Z|170591|S100 calcium binding protein Z##NM_130772|S100Z|170591|S100 calcium binding protein Z	0.041512	0.0	
chr9	116639125	116639267	reg1008076.p1	6.697	+	TSC_hg19_v1_chr9_+_116638585 BC036039 NM_133374 BC136287 BC143826 AK126896 BC053892	-597	+	TSC_hg19_v1_chr9_+_116356408 BC018072 BC019039 CU676160	-282715	+	AF490838 NM_144489 AK054584	-282986	+	TSC_hg19_v1_chr9_-_116840540 CU692002 AB463406 X04494	201304	-	TSC_hg19_v1_chr9_-_116840546 AY544123	201351	-	TSC_hg19_v1_chr9_-_116840581 X04225 AK290837	201373	-	BC036039|ZNF618|114991|zinc finger protein 618##NM_133374|ZNF618|114991|zinc finger protein 618##BC136287|ZNF618|114991|zinc finger protein 618##BC143826|ZNF618|114991|zinc finger protein 618##AK126896|ZNF618|114991|zinc finger protein 618##BC053892|ZNF618|114991|zinc finger protein 618##BC018072|RGS3|5998|regulator of G-protein signaling 3##BC019039|RGS3|5998|regulator of G-protein signaling 3##AF490838|RGS3|5998|regulator of G-protein signaling 3##NM_144489|RGS3|5998|regulator of G-protein signaling 3##AK054584|RGS3|5998|regulator of G-protein signaling 3##X04494|AMBP|259|alpha-1-microglobulin/bikunin precursor##AY544123|AMBP|259|alpha-1-microglobulin/bikunin precursor##X04225|AMBP|259|alpha-1-microglobulin/bikunin precursor##AK290837|AMBP|259|alpha-1-microglobulin/bikunin precursor	0.294334	0.364795	CTCF.p2:45:0.365
chr18	42260823	42260926	reg1006207.p1	6.696	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-6	+	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	-760	+	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	-1403445	-	NM_001242692 AK292422	532078	+	AF349446 NM_007163	933891	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	1043230	+	AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	0.884558	0.0	denovo_WM_7:-32:0.860
chr2	242245048	242245215	reg1005414.p2	6.696	+	TSC_hg19_v1_chr2_-_242212511 AK309075	-32615	-	TSC_hg19_v1_chr2_-_242212245 AK300312 NM_001243900 NM_203346	-32887	-	TSC_hg19_v1_chr2_-_242212216 M64098	-32911	-	BC014455 NM_001008491 NM_006155 TSC_hg19_v1_chr2_+_242254810 D63878	9636	+	TSC_hg19_v1_chr2_-_242255074 BC001179 AK296684 AK312335	9904	-	BX647759 NM_005336 TSC_hg19_v1_chr2_-_242255118	9987	-	AK309075|HDLBP|3069|high density lipoprotein binding protein##AK300312|HDLBP|3069|high density lipoprotein binding protein##NM_001243900|HDLBP|3069|high density lipoprotein binding protein##NM_203346|HDLBP|3069|high density lipoprotein binding protein##M64098|HDLBP|3069|high density lipoprotein binding protein##BC014455|SEPT2|4735|septin 2##NM_001008491|SEPT2|4735|septin 2##NM_006155|SEPT2|4735|septin 2##D63878|SEPT2|4735|septin 2##BC001179|HDLBP|3069|high density lipoprotein binding protein##AK296684|HDLBP|3069|high density lipoprotein binding protein##AK312335|HDLBP|3069|high density lipoprotein binding protein##BX647759|HDLBP|3069|high density lipoprotein binding protein##NM_005336|HDLBP|3069|high density lipoprotein binding protein	0.982008	0.0	denovo_WM_7:51:0.327	denovo_WM_7:52:0.327	denovo_WM_7:53:0.327
chr3	79334031	79334172	reg1006236.p1	6.696	+	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	-265514	-	TSC_hg19_v1_chr3_-_78666943 AK025535	-667116	-	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	-2244821	+	NM_002941	482957	-	TSC_hg19_v1_chr3_-_81810692 EU176342 L07956	2476596	-	TSC_hg19_v1_chr3_-_81810798 AK312245	2476697	-	NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##EU176342|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##L07956|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK312245|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1	0.02368	0.0	
chr7	14754099	14754267	reg1005660.p1	6.696	+	NM_001163148	-723134	-	NM_001163149 X87175	-723315	-	NM_001163147 NM_004956	-724542	-	BC105005 BC143632 BC143633 NM_004080 NM_145695	126831	-	BC108676 AK131284 NM_001004320	847423	-	AB463880 CR536553 CU677801 L36328 TSC_hg19_v1_chr7_-_15726203 BC017021 AK313386	971946	-	NM_001163148|ETV1|2115|ets variant 1##NM_001163149|ETV1|2115|ets variant 1##X87175|ETV1|2115|ets variant 1##NM_001163147|ETV1|2115|ets variant 1##NM_004956|ETV1|2115|ets variant 1##BC105005|DGKB|1607|diacylglycerol kinase, beta 90kDa##BC143632|DGKB|1607|diacylglycerol kinase, beta 90kDa##BC143633|DGKB|1607|diacylglycerol kinase, beta 90kDa##NM_004080|DGKB|1607|diacylglycerol kinase, beta 90kDa##NM_145695|DGKB|1607|diacylglycerol kinase, beta 90kDa##BC108676|AGMO|392636|alkylglycerol monooxygenase##AK131284|AGMO|392636|alkylglycerol monooxygenase##NM_001004320|AGMO|392636|alkylglycerol monooxygenase##CR536553|MEOX2|4223|mesenchyme homeobox 2##L36328|MEOX2|4223|mesenchyme homeobox 2##BC017021|MEOX2|4223|mesenchyme homeobox 2##AK313386|MEOX2|4223|mesenchyme homeobox 2	0.082875	0.0	
chr3	178232031	178232164	reg1005559.p1	6.695	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-1317038	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-1317146	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-1317847	-	BC017825 NM_181361	22126	+	AF209747 NM_005832	44455	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	557468	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	0.011575	0.042138	
chrX	48382014	48382148	reg1003989.p1	6.695	+	NM_006579 TSC_hg19_v1_chrX_+_48380224 BC001549 BC001572 Z37986	-1872	+	AK316378 NM_203474 NM_203475 AF317058 AF317059 AF317060 AF317061 AB529146 CU676372 DQ892632 DQ895869	-13946	+	TSC_hg19_v1_chrX_+_48367379 NM_022825 NM_203473 AK293347 AK056340 BC019080 AK057727 AK314745	-14670	+	TSC_hg19_v1_chrX_+_48398116 NM_002536 AK298884 AK293521 AK293875 AK316199 BC052609 BC101817 BC101819 BC143395 BC041614 BC064334 BC082255 BC125088 BC125089	16022	+	TSC_hg19_v1_chrX_+_48398162 AB449912 AK294776	16123	+	NM_006743 TSC_hg19_v1_chrX_+_48432898 AK000859 AK289614 BX647914 BC006825 AY203954	50751	+	NM_006579|EBP|10682|emopamil binding protein (sterol isomerase)##BC001549|EBP|10682|emopamil binding protein (sterol isomerase)##BC001572|EBP|10682|emopamil binding protein (sterol isomerase)##Z37986|EBP|10682|emopamil binding protein (sterol isomerase)##AK316378|PORCN|64840|porcupine homolog (Drosophila)##NM_203474|PORCN|64840|porcupine homolog (Drosophila)##NM_203475|PORCN|64840|porcupine homolog (Drosophila)##AF317058|PORCN|64840|porcupine homolog (Drosophila)##AF317059|PORCN|64840|porcupine homolog (Drosophila)##AF317060|PORCN|64840|porcupine homolog (Drosophila)##AF317061|PORCN|64840|porcupine homolog (Drosophila)##DQ892632|PORCN|64840|porcupine homolog (Drosophila)##DQ895869|PORCN|64840|porcupine homolog (Drosophila)##NM_022825|PORCN|64840|porcupine homolog (Drosophila)##NM_203473|PORCN|64840|porcupine homolog (Drosophila)##AK293347|PORCN|64840|porcupine homolog (Drosophila)##AK056340|PORCN|64840|porcupine homolog (Drosophila)##BC019080|PORCN|64840|porcupine homolog (Drosophila)##AK057727|PORCN|64840|porcupine homolog (Drosophila)##AK314745|PORCN|64840|porcupine homolog (Drosophila)##NM_002536|TBC1D25|4943|TBC1 domain family, member 25##AK298884|TBC1D25|4943|TBC1 domain family, member 25##AK293521|TBC1D25|4943|TBC1 domain family, member 25##AK293875|TBC1D25|4943|TBC1 domain family, member 25##AK316199|TBC1D25|4943|TBC1 domain family, member 25##BC052609|TBC1D25|4943|TBC1 domain family, member 25##BC101817|TBC1D25|4943|TBC1 domain family, member 25##BC101819|TBC1D25|4943|TBC1 domain family, member 25##BC143395|TBC1D25|4943|TBC1 domain family, member 25##BC041614|TBC1D25|4943|TBC1 domain family, member 25##BC064334|TBC1D25|4943|TBC1 domain family, member 25##BC082255|TBC1D25|4943|TBC1 domain family, member 25##BC125088|TBC1D25|4943|TBC1 domain family, member 25##BC125089|TBC1D25|4943|TBC1 domain family, member 25##AB449912|TBC1D25|4943|TBC1 domain family, member 25##AK294776|TBC1D25|4943|TBC1 domain family, member 25##NM_006743|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AK000859|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AK289614|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##BX647914|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##BC006825|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AY203954|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3	0.998368	0.0	denovo_WM_7:26:0.229	denovo_WM_7:27:0.229	denovo_WM_7:28:0.229	denovo_WM_7:29:0.229
chr10	64493327	64493463	reg1005693.p1	6.694	+	AJ505150 NM_199452	-213189	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-359352	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-464856	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	71147	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	71262	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	82702	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.0	0.0	
chr1	219638787	219638907	reg1005320.p1	6.694	+	TSC_hg19_v1_chr1_+_219347219 AK123628 AK309689 AK291542 BC016711 AK129913 AY341430	-291605	+	TSC_hg19_v1_chr1_+_219347170 NM_138794	-291689	+	M19154 TSC_hg19_v1_chr1_+_218519634	-1119242	+	BC036078 TSC_hg19_v1_chr1_-_220101540	462682	-	AB464233 TSC_hg19_v1_chr1_-_220101784	462944	-	TSC_hg19_v1_chr1_-_220101974 AY212919 AK090806 AX746624 NM_018713	463118	-	AK123628|LYPLAL1|127018|lysophospholipase-like 1##AK309689|LYPLAL1|127018|lysophospholipase-like 1##AK291542|LYPLAL1|127018|lysophospholipase-like 1##BC016711|LYPLAL1|127018|lysophospholipase-like 1##AK129913|LYPLAL1|127018|lysophospholipase-like 1##AY341430|LYPLAL1|127018|lysophospholipase-like 1##NM_138794|LYPLAL1|127018|lysophospholipase-like 1##M19154|TGFB2|7042|transforming growth factor, beta 2##BC036078|SLC30A10|55532|solute carrier family 30, member 10##AY212919|SLC30A10|55532|solute carrier family 30, member 10##AK090806|SLC30A10|55532|solute carrier family 30, member 10##NM_018713|SLC30A10|55532|solute carrier family 30, member 10	0.0	0.0	
chr5	161923484	161923656	reg1005541.p1	6.694	+	NM_000816 NM_198903 NM_198904 BC052926 BC036030 X15376 BC059389 BC069348 BC074795 AK315200 AK299640	-428725	+	NM_001127648 AB590312 DQ890915	-645811	+	NM_001127647	-646179	+	TSC_hg19_v1_chr5_+_162864606 AK316234 NM_004060 NM_199246 AK297190 AK312913 BC007093 BX538035 D78341 L49504 BC000196	941051	+	AB528197 AM392736 AM393438 FJ215684 AK094647 TSC_hg19_v1_chr5_-_162887097	963508	-	AK311957 TSC_hg19_v1_chr5_-_162887119 BC017934 BX538290 NM_145266	963563	-	NM_000816|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198903|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198904|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC052926|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC036030|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##X15376|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC059389|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC069348|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC074795|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK315200|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK299640|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_001127648|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##DQ890915|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_001127647|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK316234|CCNG1|900|cyclin G1##NM_004060|CCNG1|900|cyclin G1##NM_199246|CCNG1|900|cyclin G1##AK297190|CCNG1|900|cyclin G1##AK312913|CCNG1|900|cyclin G1##BC007093|CCNG1|900|cyclin G1##BX538035|CCNG1|900|cyclin G1##D78341|CCNG1|900|cyclin G1##L49504|CCNG1|900|cyclin G1##BC000196|CCNG1|900|cyclin G1##AM392736|NUDCD2|134492|NudC domain containing 2##AM393438|NUDCD2|134492|NudC domain containing 2##FJ215684|NUDCD2|134492|NudC domain containing 2##AK311957|NUDCD2|134492|NudC domain containing 2##BC017934|NUDCD2|134492|NudC domain containing 2##BX538290|NUDCD2|134492|NudC domain containing 2##NM_145266|NUDCD2|134492|NudC domain containing 2	0.039096	0.0	
chr10	120971597	120971726	reg1005820.p1	6.693	+	TSC_hg19_v1_chr10_+_120967098 BC018116 BC064506 BC064506 NM_005308 L15388 AK309761 AK309761 AK313012 AB590773	-4400	+	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	-33314	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	-33358	-	NM_002925	324383	-	AB587433 BC009361 TSC_hg19_v1_chr10_-_121302217 AK290773 NM_001005339	330529	-	AB527493 AY633610 AK295243 M96954 TSC_hg19_v1_chr10_-_121356143 AK290984 AK291239	384447	-	BC018116|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##NM_005308|GRK5|2869|G protein-coupled receptor kinase 5##L15388|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK313012|GRK5|2869|G protein-coupled receptor kinase 5##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##NM_002925|RGS10|6001|regulator of G-protein signaling 10##BC009361|RGS10|6001|regulator of G-protein signaling 10##AK290773|RGS10|6001|regulator of G-protein signaling 10##NM_001005339|RGS10|6001|regulator of G-protein signaling 10##AY633610|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK295243|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##M96954|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK290984|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK291239|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.995389	0.0	denovo_WM_7:13:0.442	denovo_WM_7:14:0.379
chr2	187814549	187814728	reg1005308.p1	6.693	+	AK128006 BC031094 NM_182521	-100742	-	TSC_hg19_v1_chr2_+_187558788 AK091423 AK289737 AX746973 BC060872 NM_177454 AF361495 CU687488	-255862	+	AK302990 NM_001144999	-349707	+	DQ280491 U17473 L76380 AK291630 AK292998 DQ280490 NM_005795	498308	-	J03225 AF021834 TSC_hg19_v1_chr2_-_188419163 AK313562 BC015514 BC014332	604472	-	TSC_hg19_v1_chr2_-_188419185 NM_001032281 NM_006287	604563	-	AK128006|ZSWIM2|151112|zinc finger, SWIM-type containing 2##BC031094|ZSWIM2|151112|zinc finger, SWIM-type containing 2##NM_182521|ZSWIM2|151112|zinc finger, SWIM-type containing 2##AK091423|FAM171B|165215|family with sequence similarity 171, member B##AK289737|FAM171B|165215|family with sequence similarity 171, member B##BC060872|FAM171B|165215|family with sequence similarity 171, member B##NM_177454|FAM171B|165215|family with sequence similarity 171, member B##AF361495|FAM171B|165215|family with sequence similarity 171, member B##AK302990|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##NM_001144999|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##DQ280491|CALCRL|10203|calcitonin receptor-like##U17473|CALCRL|10203|calcitonin receptor-like##L76380|CALCRL|10203|calcitonin receptor-like##AK291630|CALCRL|10203|calcitonin receptor-like##AK292998|CALCRL|10203|calcitonin receptor-like##NM_005795|CALCRL|10203|calcitonin receptor-like##J03225|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AF021834|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AK313562|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC015514|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC014332|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_001032281|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_006287|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)	1.979393	0.0	denovo_WM_7:5:0.487	denovo_WM_7:6:0.487
chr3	177078215	177078373	reg1005958.p2	6.693	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-163235	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-163343	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-164044	-	BC017825 NM_181361	1175929	+	AF209747 NM_005832	1198258	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	1711271	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	1.962464	0.0	denovo_WM_7:-6:0.657	denovo_WM_7:-58:0.289	denovo_WM_7:-59:0.581
chr11	3915384	3915561	reg1004977.p2	6.691	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-38543	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-53273	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-53317	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	200517	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	200594	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	200687	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.0	0.0	
chr15	90722006	90722182	reg1005653.p2	6.691	+	TSC_hg19_v1_chr15_-_90645713 AK312627	-76367	-	TSC_hg19_v1_chr15_-_90645704 NM_002168 X69433	-76389	-	DQ892817 DQ896063 CU679271 TSC_hg19_v1_chr15_-_90645701 BC071828 BC009244 AK222916 AK299987	-76432	-	TSC_hg19_v1_chr15_+_90728151 NM_020210 AK289991 AY358392	6102	+	TSC_hg19_v1_chr15_+_90744561 AY445887 NM_198925 AB051532 BC126438 BC144141 BC110853 AB385501 HQ258520 AK026108	22596	+	TSC_hg19_v1_chr15_-_90777138 AB451276 AB451406 AB463454 CR456955 DQ891196 DQ894379	55034	-	AK312627|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_002168|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##X69433|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ892817|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ896063|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC071828|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC009244|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK222916|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK299987|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_020210|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AK289991|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AY358392|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AY445887|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##NM_198925|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AB051532|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC126438|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC144141|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC110853|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##HQ258520|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AK026108|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AB451276|CIB1|10519|calcium and integrin binding 1 (calmyrin)##AB451406|CIB1|10519|calcium and integrin binding 1 (calmyrin)##CR456955|CIB1|10519|calcium and integrin binding 1 (calmyrin)##DQ891196|CIB1|10519|calcium and integrin binding 1 (calmyrin)##DQ894379|CIB1|10519|calcium and integrin binding 1 (calmyrin)	0.946649	0.0	denovo_WM_7:90:0.490
chr20	48321391	48321571	reg1006040.p1	6.691	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-136792	-	BC110572 BC110573 NM_004975	-222302	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-426286	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	8749	-	AB004550 TSC_hg19_v1_chr20_-_48330359	8875	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	8985	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.930333	0.0	denovo_WM_7:61:0.758
chr9	27588318	27588458	reg1007360.p1	6.691	+	AK057806 JN681271 NM_145005	-14547	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	-14917	-	TSC_hg19_v1_chr9_-_27529809 AL832572 BC033027 AK023266 NM_024761	-58738	-	AK056372 NM_152570	1130914	-	TSC_hg19_v1_chr9_+_32384618 NM_002197 AF261088	4796202	+	TSC_hg19_v1_chr9_+_32384622 AK057904	4796239	+	AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##AL832572|MOB3B|79817|MOB kinase activator 3B##BC033027|MOB3B|79817|MOB kinase activator 3B##AK023266|MOB3B|79817|MOB kinase activator 3B##NM_024761|MOB3B|79817|MOB kinase activator 3B##AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_002197|ACO1|48|aconitase 1, soluble##AF261088|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble	0.997348	0.0	denovo_WM_7:15:0.816
chrX	80745664	80745795	reg1005300.p2	6.691	+	TSC_hg19_v1_chrX_+_80457600 BC016709 AL136718 AK129610 AF042081 AK310011 AB590910 CR533478	-288081	+	TSC_hg19_v1_chrX_+_80457572 AK309351	-288153	+	AK094058 AX748432 NM_030763	-288289	-	AK314967 NM_000307 TSC_hg19_v1_chrX_+_82763302 X82324 AB464667	2017570	+	BC021669 BC058019 BC070355 BC126461 NM_021118 HQ258477	2370442	+	AB587525 CR536566 AK313240 BC143647 BC143648 NM_014496 TSC_hg19_v1_chrX_-_83443024	2697243	-	BC016709|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AL136718|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK129610|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AF042081|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK310011|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##CR533478|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK314967|POU3F4|5456|POU class 3 homeobox 4##NM_000307|POU3F4|5456|POU class 3 homeobox 4##X82324|POU3F4|5456|POU class 3 homeobox 4##BC021669|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC058019|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC070355|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC126461|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##NM_021118|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##HQ258477|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##CR536566|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##AK313240|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##BC143647|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##BC143648|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##NM_014496|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6	0.996177	0.955159	CTCF.p2:-46:0.955
chr11	64068561	64068741	reg1002052.p1	6.690	+	AL117564 NM_001039496 AM392988 AB590987	-780	+	TSC_hg19_v1_chr11_+_64058772 AK309443 NM_033310 BC067791 AF259500 AK296021	-9820	+	AJ250392 NM_001170880 NM_020155	-15070	+	TSC_hg19_v1_chr11_+_64073040 L38487 NM_004451 BC063795 BC073956	4417	+	TSC_hg19_v1_chr11_-_64085009 AK312050 DQ892261 DQ895463 BC105294 BC029482 BC017172 AF161501 AF229068 NM_016404	16370	-	BC110983 NM_012094 NM_181651 NM_181652 TSC_hg19_v1_chr11_+_64085600 AF197952	16928	+	AL117564|C11orf20|25858|chromosome 11 open reading frame 20##NM_001039496|C11orf20|25858|chromosome 11 open reading frame 20##AM392988|C11orf20|25858|chromosome 11 open reading frame 20##AK309443|KCNK4|50801|potassium channel, subfamily K, member 4##NM_033310|KCNK4|50801|potassium channel, subfamily K, member 4##BC067791|KCNK4|50801|potassium channel, subfamily K, member 4##AF259500|KCNK4|50801|potassium channel, subfamily K, member 4##AK296021|KCNK4|50801|potassium channel, subfamily K, member 4##AJ250392|GPR137|56834|G protein-coupled receptor 137##NM_001170880|GPR137|56834|G protein-coupled receptor 137##NM_020155|GPR137|56834|G protein-coupled receptor 137##L38487|ESRRA|2101|estrogen-related receptor alpha##NM_004451|ESRRA|2101|estrogen-related receptor alpha##BC063795|ESRRA|2101|estrogen-related receptor alpha##BC073956|ESRRA|2101|estrogen-related receptor alpha##AK312050|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ892261|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ895463|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC105294|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC029482|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC017172|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF161501|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF229068|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##NM_016404|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC110983|PRDX5|25824|peroxiredoxin 5##NM_012094|PRDX5|25824|peroxiredoxin 5##NM_181651|PRDX5|25824|peroxiredoxin 5##NM_181652|PRDX5|25824|peroxiredoxin 5##AF197952|PRDX5|25824|peroxiredoxin 5	0.521134	0.35642	CTCF.p2:-10:0.356
chr17	32106258	32106379	reg1005500.p1	6.688	+	AL834182 NM_183377	-486313	-	AF216311 NM_173847 BC100886 BC100887	-787416	+	TSC_hg19_v1_chr17_+_31255221 AL117619 AK313569 AY358573 BC000526	-851115	+	EU446513 U50352 BC075042 BC075043 U53212 AK313043 NM_001094 U57352	377369	-	NM_002982 M24545 AK311308 AK311960 BC009716 S71513 X14768 M28226 S69738 DQ893725 EU176175 AB463485 BT007329	476013	+	NM_006273 X71087 BC092436 BC070240 BC112258 BC112260 AB587424 HQ258695	490955	+	AL834182|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_183377|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AF216311|SPACA3|124912|sperm acrosome associated 3##NM_173847|SPACA3|124912|sperm acrosome associated 3##BC100886|SPACA3|124912|sperm acrosome associated 3##BC100887|SPACA3|124912|sperm acrosome associated 3##AL117619|TMEM98|26022|transmembrane protein 98##AK313569|TMEM98|26022|transmembrane protein 98##AY358573|TMEM98|26022|transmembrane protein 98##BC000526|TMEM98|26022|transmembrane protein 98##EU446513|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U50352|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##BC075042|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##BC075043|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U53212|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AK313043|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_001094|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U57352|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_002982|CCL2|6347|chemokine (C-C motif) ligand 2##M24545|CCL2|6347|chemokine (C-C motif) ligand 2##AK311960|CCL2|6347|chemokine (C-C motif) ligand 2##BC009716|CCL2|6347|chemokine (C-C motif) ligand 2##S71513|CCL2|6347|chemokine (C-C motif) ligand 2##X14768|CCL2|6347|chemokine (C-C motif) ligand 2##M28226|CCL2|6347|chemokine (C-C motif) ligand 2##S69738|CCL2|6347|chemokine (C-C motif) ligand 2##DQ893725|CCL2|6347|chemokine (C-C motif) ligand 2##EU176175|CCL2|6347|chemokine (C-C motif) ligand 2##BT007329|CCL2|6347|chemokine (C-C motif) ligand 2##NM_006273|CCL7|6354|chemokine (C-C motif) ligand 7##X71087|CCL7|6354|chemokine (C-C motif) ligand 7##BC092436|CCL7|6354|chemokine (C-C motif) ligand 7##BC070240|CCL7|6354|chemokine (C-C motif) ligand 7##BC112258|CCL7|6354|chemokine (C-C motif) ligand 7##BC112260|CCL7|6354|chemokine (C-C motif) ligand 7##HQ258695|CCL7|6354|chemokine (C-C motif) ligand 7	0.767765	0.955962	CTCF.p2:-2:0.956	denovo_WM_7:60:0.739
chr16	24681137	24681311	reg1006222.p2	6.687	+	BC029649 TSC_hg19_v1_chr16_+_24567629	-113596	+	AF063596 BC101139 BC101140 BC101141 BC101142 BC114353 BC114354 BC118667 BC139830 BC029352 BC063524 AB112074 AB112075 BX648661 TSC_hg19_v1_chr16_+_24552052	-129360	+	TSC_hg19_v1_chr16_+_24550886 NM_006910 NM_018703 NM_032626	-130331	+	TSC_hg19_v1_chr16_+_24741000 NM_014494	59774	+	AY035864 TSC_hg19_v1_chr16_+_24788680	107400	+	TSC_hg19_v1_chr16_+_24802422 AL833757	121257	+	BC029649|RBBP6|5930|retinoblastoma binding protein 6##AF063596|RBBP6|5930|retinoblastoma binding protein 6##BC101139|RBBP6|5930|retinoblastoma binding protein 6##BC101140|RBBP6|5930|retinoblastoma binding protein 6##BC101141|RBBP6|5930|retinoblastoma binding protein 6##BC101142|RBBP6|5930|retinoblastoma binding protein 6##BC114353|RBBP6|5930|retinoblastoma binding protein 6##BC114354|RBBP6|5930|retinoblastoma binding protein 6##BC118667|RBBP6|5930|retinoblastoma binding protein 6##BC139830|RBBP6|5930|retinoblastoma binding protein 6##BC029352|RBBP6|5930|retinoblastoma binding protein 6##BC063524|RBBP6|5930|retinoblastoma binding protein 6##AB112074|RBBP6|5930|retinoblastoma binding protein 6##AB112075|RBBP6|5930|retinoblastoma binding protein 6##BX648661|RBBP6|5930|retinoblastoma binding protein 6##NM_006910|RBBP6|5930|retinoblastoma binding protein 6##NM_018703|RBBP6|5930|retinoblastoma binding protein 6##NM_032626|RBBP6|5930|retinoblastoma binding protein 6##NM_014494|TNRC6A|27327|trinucleotide repeat containing 6A##AY035864|TNRC6A|27327|trinucleotide repeat containing 6A##AL833757|TNRC6A|27327|trinucleotide repeat containing 6A	1.403364	0.0	denovo_WM_7:44:0.388	denovo_WM_7:59:0.398
chr17	76800622	76800707	reg1004974.p1	6.687	+	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	-22311	-	TSC_hg19_v1_chr17_-_76732958 AK311535	-67666	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-80913	-	BC071582 TSC_hg19_v1_chr17_-_76836610	35986	-	TSC_hg19_v1_chr17_-_76836843 AK225426	36119	-	TSC_hg19_v1_chr17_-_76836895 AB040886 BC027992 AK022913 AK225155 BC016487 BC038983 NM_025090 AK001671	36256	-	EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36##AB040886|USP36|57602|ubiquitin specific peptidase 36##BC027992|USP36|57602|ubiquitin specific peptidase 36##AK022913|USP36|57602|ubiquitin specific peptidase 36##AK225155|USP36|57602|ubiquitin specific peptidase 36##BC016487|USP36|57602|ubiquitin specific peptidase 36##BC038983|USP36|57602|ubiquitin specific peptidase 36##NM_025090|USP36|57602|ubiquitin specific peptidase 36##AK001671|USP36|57602|ubiquitin specific peptidase 36	3.864459	0.0	denovo_WM_7:49:0.958	denovo_WM_7:64:0.957	denovo_WM_7:-78:0.497	denovo_WM_7:-79:0.321	denovo_WM_7:-95:0.413	denovo_WM_7:-98:0.271
chr12	69647872	69648015	reg1005768.p1	6.686	+	TSC_hg19_v1_chr12_+_69633357 BC005000 BC000714 X67337 AK292024 CU674352 CU678850 DQ892159 EU176688	-14554	+	NM_007007 TSC_hg19_v1_chr12_+_69633348 AK223568 AK299928	-14610	+	J04970 NM_001874 AK127859	-290924	-	TSC_hg19_v1_chr12_+_69742133 AK130149 NM_000239	94188	+	TSC_hg19_v1_chr12_+_69742163 AK310930 AK311779 J03801 FJ795023 BC004147 M21119 M19045 AB463851 DQ892271 DQ895472 U25677	94266	+	TSC_hg19_v1_chr12_+_69753535 NM_006530 U61384 AJ245746 BC000994 AK001413 AB464359 EU446926	105663	+	BC005000|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##BC000714|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##X67337|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK292024|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##DQ892159|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##EU176688|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##NM_007007|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK223568|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK299928|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##J04970|CPM|1368|carboxypeptidase M##NM_001874|CPM|1368|carboxypeptidase M##AK127859|CPM|1368|carboxypeptidase M##AK130149|LYZ|4069|lysozyme##NM_000239|LYZ|4069|lysozyme##AK311779|LYZ|4069|lysozyme##J03801|LYZ|4069|lysozyme##FJ795023|LYZ|4069|lysozyme##BC004147|LYZ|4069|lysozyme##M21119|LYZ|4069|lysozyme##M19045|LYZ|4069|lysozyme##DQ892271|LYZ|4069|lysozyme##DQ895472|LYZ|4069|lysozyme##U25677|LYZ|4069|lysozyme##NM_006530|YEATS4|8089|YEATS domain containing 4##U61384|YEATS4|8089|YEATS domain containing 4##AJ245746|YEATS4|8089|YEATS domain containing 4##BC000994|YEATS4|8089|YEATS domain containing 4##AK001413|YEATS4|8089|YEATS domain containing 4##EU446926|YEATS4|8089|YEATS domain containing 4	0.0	0.492193	CTCF.p2:-10:0.492
chr7	35846717	35846835	reg1004647.p1	6.686	+	DQ232879 TSC_hg19_v1_chr7_+_35840853 BC067264 AK300601 AB209677	-5924	+	TSC_hg19_v1_chr7_+_35840828 AB073389 AK223225 AK223241 AK297883 AK298453 BC025987 BX571755 S72008 BC093640 BC093642	-5943	+	NM_001011553 NM_001242956 NM_001788 TSC_hg19_v1_chr7_+_35840766 BC107718 AK290545	-6066	+	TSC_hg19_v1_chr7_+_36192789 NM_030636	346029	+	TSC_hg19_v1_chr7_+_36192862 AK027386 BC065518	346107	+	TSC_hg19_v1_chr7_+_36193025 AB051493	346279	+	DQ232879|SEPT7|989|septin 7##BC067264|SEPT7|989|septin 7##AK300601|SEPT7|989|septin 7##AB209677|SEPT7|989|septin 7##AB073389|SEPT7|989|septin 7##AK223225|SEPT7|989|septin 7##AK223241|SEPT7|989|septin 7##AK297883|SEPT7|989|septin 7##AK298453|SEPT7|989|septin 7##BC025987|SEPT7|989|septin 7##BX571755|SEPT7|989|septin 7##S72008|SEPT7|989|septin 7##BC093640|SEPT7|989|septin 7##BC093642|SEPT7|989|septin 7##NM_001011553|SEPT7|989|septin 7##NM_001242956|SEPT7|989|septin 7##NM_001788|SEPT7|989|septin 7##BC107718|SEPT7|989|septin 7##AK290545|SEPT7|989|septin 7##NM_030636|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AK027386|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##BC065518|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AB051493|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1	0.996942	0.0	denovo_WM_7:28:0.841
chr13	100155970	100156101	reg1006266.p1	6.685	+	TSC_hg19_v1_chr13_+_100153777 BC130293	-2253	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	-2335	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-196337	-	BC041830 TSC_hg19_v1_chr13_+_100229390	73342	+	TSC_hg19_v1_chr13_+_100258943 NM_206808 AK300510 BC034360 AK095506 AF428253 CU689862	102885	+	AF378304 NM_033132	468134	-	BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##NM_206808|CLYBL|171425|citrate lyase beta like##AK300510|CLYBL|171425|citrate lyase beta like##BC034360|CLYBL|171425|citrate lyase beta like##AK095506|CLYBL|171425|citrate lyase beta like##AF428253|CLYBL|171425|citrate lyase beta like##AF378304|ZIC5|85416|Zic family member 5##NM_033132|ZIC5|85416|Zic family member 5	1.13736	0.0	
chr15	80194366	80194481	reg1006189.p1	6.684	+	NM_001199758	-4797	-	BC012417 AL110101 AB527712 CU676480 TSC_hg19_v1_chr15_-_80189345 L38928 BC019921 NM_006441	-5043	-	AB028947 NM_015206 BC152466	-469564	+	AL109714 NM_001100879	13174	-	NM_001199760	21024	-	NM_001100880 NM_001199757	21240	-	NM_001199758|MTHFS|10588|5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)##BC012417|MTHFS|10588|5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)##AL110101|MTHFS|10588|5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)##L38928|MTHFS|10588|5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)##BC019921|MTHFS|10588|5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)##NM_006441|MTHFS|10588|5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)##AB028947|KIAA1024|23251|KIAA1024##NM_015206|KIAA1024|23251|KIAA1024##BC152466|KIAA1024|23251|KIAA1024##AL109714|ST20|400410|suppressor of tumorigenicity 20##NM_001100879|ST20|400410|suppressor of tumorigenicity 20##NM_001199760|ST20-MTHFS|100528021|ST20-MTHFS readthrough##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20	0.992962	0.0	denovo_WM_7:-14:0.862
chr19	18140373	18140520	reg1005119.p2	6.684	+	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	-21428	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	-28496	+	NM_002248 U69883	-78336	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	57286	-	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	68163	+	BC063240 TSC_hg19_v1_chr19_+_18263972	123535	+	AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##NM_002248|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##U69883|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3	0.997974	0.0	
chr3	156273263	156273406	reg1000252.p2	6.684	+	TSC_hg19_v1_chr3_-_156272919 AF087907 AF110647 BC017203 NM_007107	-391	-	TSC_hg19_v1_chr3_-_156272894 BT006669 DQ892572 DQ895788 AK304364 AK312935	-453	-	NM_172159 BC043166 AK127240	-264524	+	NM_015508	118870	+	AK291261 TSC_hg19_v1_chr3_+_156392402 BX537965 BC050350	119068	+	CR749647 NM_001184717	119380	+	AF087907|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF110647|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BC017203|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_007107|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BT006669|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ892572|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ895788|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK304364|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK312935|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_015508|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AK291261|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BX537965|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BC050350|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##CR749647|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##NM_001184717|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase	0.0	0.0	
chr6_qbl_hap6	3838826	3838939	reg1005221.p1	6.684	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.985112	0.0	denovo_WM_7:-24:0.565	denovo_WM_7:-27:0.376
chr9	19233434	19233614	reg1003375.p2	6.684	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-105976	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-106047	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-130515	-	NM_017925 BC144484 BC144485	57227	+	TSC_hg19_v1_chr9_-_19378815 BC035447	145342	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	146703	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	0.997023	0.0	denovo_WM_7:43:0.313	denovo_WM_7:44:0.313	denovo_WM_7:45:0.313
chr19	45274057	45274181	reg1002207.p2	6.683	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	-22138	+	BC144608 NM_001039213	-71699	+	BC083499 NM_001127893 NM_020219	-99396	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	7037	+	TSC_hg19_v1_chr19_+_45312359 BC014065 NM_001013257 NM_005581 X83425 BC036745 X80026 BC050450 AB463427 CU690688 HE572749	38237	+	NM_001042724 NM_002856 TSC_hg19_v1_chr19_+_45349482	75323	+	NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##BC083499|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_001127893|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_020219|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001013257|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_005581|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X83425|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC036745|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X80026|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC050450|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_001042724|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_002856|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)	0.291449	0.994792	CTCF.p2:-10:0.995	denovo_WM_7:42:0.212
chr10	82791607	82791775	reg1005075.p1	6.682	+	AK123978 NM_001145719	-491117	+	AK123885 NM_207372	-494034	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-577587	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	843391	+	DQ857894 NM_001165973	845751	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	3107566	+	AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##BC002920|TSPAN14|81619|tetraspanin 14##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein	0.114588	0.0	
chr16	85591137	85591224	reg1003709.p1	6.682	+	BC093665 BC111944 AK126284 NM_198491	-445126	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-529810	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-546051	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	53841	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	55773	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	131362	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.643944	0.0	denovo_WM_7:2:0.378	denovo_WM_7:3:0.245
chr4	87857645	87857751	reg1004837.p1	6.682	+	TSC_hg19_v1_chr4_+_87857481 L13743	-215	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-1483	+	BC016746 BC063410 NM_144645	-44138	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	70623	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	110553	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	283964	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	0.0	0.0	
chr11	120296566	120296744	reg1001005.p2	6.681	+	BC063117 NM_001198665 NM_015313	-89038	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	-89551	+	AK096207 AK304086 TSC_hg19_v1_chr11_+_120196007 AK289680 AK294713 BC015232	-100637	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	85810	+	AB384776 NM_014619 S67803	234372	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	598155	+	BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK096207|TMEM136|219902|transmembrane protein 136##AK304086|TMEM136|219902|transmembrane protein 136##AK289680|TMEM136|219902|transmembrane protein 136##AK294713|TMEM136|219902|transmembrane protein 136##BC015232|TMEM136|219902|transmembrane protein 136##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like	0.0	0.0	
chr20	44638934	44639114	reg1006024.p1	6.680	+	TSC_hg19_v1_chr20_+_44637546 AK298246 AK301446 AK311648 AK313137 AK316145 J05070 NM_004994 AK303080 BC006093 DQ896791 EU176415 AB528343 CU675241	-1472	+	TSC_hg19_v1_chr20_-_44600992 AK296989	-38031	-	TSC_hg19_v1_chr20_-_44600828 AF395833 BC041331 BC142981 NM_022095	-38214	-	TSC_hg19_v1_chr20_+_44650321 NM_001134771	11296	+	TSC_hg19_v1_chr20_+_44657824 NM_020708 AK098371	18799	+	TSC_hg19_v1_chr20_+_44657861 AK289758 AK296331 AK294059 BC132668 BC132670 AK295096 AF208159 AB033002	18907	+	AK298246|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##AK301446|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##AK313137|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##AK316145|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##J05070|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##NM_004994|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##AK303080|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##BC006093|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##DQ896791|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##EU176415|MMP9|4318|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)##AK296989|ZNF335|63925|zinc finger protein 335##AF395833|ZNF335|63925|zinc finger protein 335##BC041331|ZNF335|63925|zinc finger protein 335##BC142981|ZNF335|63925|zinc finger protein 335##NM_022095|ZNF335|63925|zinc finger protein 335##NM_001134771|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##NM_020708|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AK098371|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AK289758|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AK296331|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AK294059|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##BC132668|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##BC132670|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AK295096|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AF208159|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5##AB033002|SLC12A5|57468|solute carrier family 12 (potassium/chloride transporter), member 5	0.994014	0.0	
chr3	15835787	15835967	reg1006751.p1	6.680	+	AY367056 NM_001195099 BC035170 BC048975	-37800	-	TSC_hg19_v1_chr3_+_15643452 AK301838	-192414	+	AK297033 TSC_hg19_v1_chr3_+_15643251 NM_000060 AK313252 AK294301 U03274 BC012099 CU680214	-192629	+	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	3805	-	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	65135	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	380317	+	AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28##AK301838|BTD|686|biotinidase##AK297033|BTD|686|biotinidase##NM_000060|BTD|686|biotinidase##AK313252|BTD|686|biotinidase##AK294301|BTD|686|biotinidase##U03274|BTD|686|biotinidase##BC012099|BTD|686|biotinidase##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	0.046845	0.0	
chr3	171063180	171063273	reg1005698.p2	6.680	+	NM_000340	-318459	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-318693	-	AB528020 J03810 TSC_hg19_v1_chr3_-_170744510 AK313622 BC060041 AK290846 AK292741	-318736	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	114845	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	465029	-	NM_001164436 AK026825	497922	+	NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##J03810|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK313622|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##BC060041|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK290846|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK292741|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212	0.996544	0.0	denovo_WM_7:4:0.921
chr4	39330687	39330849	reg1004681.p1	6.678	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	-146673	+	AK289785 NM_015990 NM_199039	-266917	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-284330	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	37184	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	77716	+	TSC_hg19_v1_chr4_+_39408557 BC104871 BC113653 BC143575	77781	+	AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta##BC104871|KLB|152831|klotho beta##BC113653|KLB|152831|klotho beta##BC143575|KLB|152831|klotho beta	1.008331	0.0	
chr10	69372987	69373110	reg1003574.p1	6.677	+	NM_178011 BX640611 AY358315 BC111492	-687233	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-4091807	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-4091886	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	52348	-	AF091606 AK313882 NM_013266	82889	-	CR457184 AF176013 BC017018 AK289537 AF176012 NM_021800 NM_201262	224804	-	NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##CR457184|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176013|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##BC017018|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AK289537|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176012|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_021800|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_201262|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12	1.011004	0.0	
chr1	155499532	155499712	reg1000527.p3	6.675	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-205330	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-205680	-	BC052277 NM_001105205	-205895	+	AF257305 TSC_hg19_v1_chr1_-_155532251	32584	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	32745	-	TSC_hg19_v1_chr1_-_155532562 AK307595	32959	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.0	0.0	
chr13	30968876	30969056	reg1005622.p1	6.675	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-87397	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-87815	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-544125	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	71027	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	71092	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	222661	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	0.997019	0.0	denovo_WM_7:-33:0.424	denovo_WM_7:-34:0.424
chr15	89959620	89959714	reg1004913.p1	6.675	+	TSC_hg19_v1_chr15_-_89878042 AK291281	-81624	-	BC050559 BC042571 NM_001126131 NM_002693 X98093 TSC_hg19_v1_chr15_-_89878036	-81646	-	TSC_hg19_v1_chr15_+_89787255 AK055176 BC140769 BC144483 BC004277	-172417	+	CU689056 AY257182 AF193809 NM_016321 BC015461 AK298252 AK298641 AF081497 AK301640 AK313238 BC030965 AK290899 AK310222	80128	-	TSC_hg19_v1_chr15_+_90118742 GQ227787 NM_152259	159111	+	TSC_hg19_v1_chr15_-_90198681 BC042063 NM_198525	238953	-	AK291281|POLG|5428|polymerase (DNA directed), gamma##BC050559|POLG|5428|polymerase (DNA directed), gamma##BC042571|POLG|5428|polymerase (DNA directed), gamma##NM_001126131|POLG|5428|polymerase (DNA directed), gamma##NM_002693|POLG|5428|polymerase (DNA directed), gamma##X98093|POLG|5428|polymerase (DNA directed), gamma##AK055176|FANCI|55215|Fanconi anemia, complementation group I##BC140769|FANCI|55215|Fanconi anemia, complementation group I##BC144483|FANCI|55215|Fanconi anemia, complementation group I##BC004277|FANCI|55215|Fanconi anemia, complementation group I##AY257182|RHCG|51458|Rh family, C glycoprotein##AF193809|RHCG|51458|Rh family, C glycoprotein##NM_016321|RHCG|51458|Rh family, C glycoprotein##BC015461|RHCG|51458|Rh family, C glycoprotein##AK298252|RHCG|51458|Rh family, C glycoprotein##AK298641|RHCG|51458|Rh family, C glycoprotein##AF081497|RHCG|51458|Rh family, C glycoprotein##AK301640|RHCG|51458|Rh family, C glycoprotein##AK313238|RHCG|51458|Rh family, C glycoprotein##BC030965|RHCG|51458|Rh family, C glycoprotein##AK290899|RHCG|51458|Rh family, C glycoprotein##AK310222|RHCG|51458|Rh family, C glycoprotein##GQ227787|C15orf42|90381|chromosome 15 open reading frame 42##NM_152259|C15orf42|90381|chromosome 15 open reading frame 42##BC042063|KIF7|374654|kinesin family member 7##NM_198525|KIF7|374654|kinesin family member 7	0.0	0.923087	CTCF.p2:10:0.923
chr1	178628962	178629086	reg1005813.p1	6.674	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	-146758	+	AF047711 NM_004841 AK290308	-318390	+	BC110611 TSC_hg19_v1_chr1_+_178063651	-565383	+	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	65349	+	AK223467 BC050640 AB056476 TSC_hg19_v1_chr1_-_178840178 AY358278 NM_004673	211122	-	TSC_hg19_v1_chr1_+_178995028 AB007944	365996	+	AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##AF047711|RASAL2|9462|RAS protein activator like 2##NM_004841|RASAL2|9462|RAS protein activator like 2##AK290308|RASAL2|9462|RAS protein activator like 2##BC110611|RASAL2|9462|RAS protein activator like 2##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK223467|ANGPTL1|9068|angiopoietin-like 1##BC050640|ANGPTL1|9068|angiopoietin-like 1##AB056476|ANGPTL1|9068|angiopoietin-like 1##AY358278|ANGPTL1|9068|angiopoietin-like 1##NM_004673|ANGPTL1|9068|angiopoietin-like 1##AB007944|FAM20B|9917|family with sequence similarity 20, member B	1.096697	0.0	denovo_WM_7:-1:0.271	denovo_WM_7:-4:0.619
chr19	48759193	48759321	reg1005461.p1	6.674	+	TSC_hg19_v1_chr19_-_48759141 BC056891 BC034564 BC046136 NM_001184902 NM_001184904	-86	-	AK125548 TSC_hg19_v1_chr19_+_48758936 BC060888 BC008448 BC033836	-308	+	AB023172 AF322184 AF511652 TSC_hg19_v1_chr19_-_48753084 BC041697 BC045539 AK302327 AK311079 AK297045 BX648568 AK297069 NM_001184901 NM_001184903 NM_014959	-6233	-	AK075062 NM_153608	15396	+	BC007730 NM_144577	64074	-	TSC_hg19_v1_chr19_-_48825152 AK128144	65913	-	BC056891|CARD8|22900|caspase recruitment domain family, member 8##BC034564|CARD8|22900|caspase recruitment domain family, member 8##BC046136|CARD8|22900|caspase recruitment domain family, member 8##NM_001184902|CARD8|22900|caspase recruitment domain family, member 8##NM_001184904|CARD8|22900|caspase recruitment domain family, member 8##AK125548|LOC100505812|100505812|uncharacterized LOC100505812##BC060888|LOC100505812|100505812|uncharacterized LOC100505812##AB023172|CARD8|22900|caspase recruitment domain family, member 8##AF322184|CARD8|22900|caspase recruitment domain family, member 8##AF511652|CARD8|22900|caspase recruitment domain family, member 8##BC041697|CARD8|22900|caspase recruitment domain family, member 8##BC045539|CARD8|22900|caspase recruitment domain family, member 8##AK302327|CARD8|22900|caspase recruitment domain family, member 8##AK311079|CARD8|22900|caspase recruitment domain family, member 8##AK297045|CARD8|22900|caspase recruitment domain family, member 8##BX648568|CARD8|22900|caspase recruitment domain family, member 8##AK297069|CARD8|22900|caspase recruitment domain family, member 8##NM_001184901|CARD8|22900|caspase recruitment domain family, member 8##NM_001184903|CARD8|22900|caspase recruitment domain family, member 8##NM_014959|CARD8|22900|caspase recruitment domain family, member 8##AK075062|ZNF114|163071|zinc finger protein 114##NM_153608|ZNF114|163071|zinc finger protein 114##BC007730|CCDC114|93233|coiled-coil domain containing 114##NM_144577|CCDC114|93233|coiled-coil domain containing 114##AK128144|CCDC114|93233|coiled-coil domain containing 114	0.0	0.0	
chr5	43137576	43137699	reg1005247.p1	6.674	+	AK057343 NM_003432 TSC_hg19_v1_chr5_+_43121669 AK310735 BC017923	-15953	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	-16023	+	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	-16636	+	BC036422 NM_153361	54689	+	BC000297 BC082234 M15802 X66435 TSC_hg19_v1_chr5_-_43313515 AK095492 AK315593	175894	-	TSC_hg19_v1_chr5_-_43313581 NM_001098272 NM_002130	175959	-	AK057343|ZNF131|7690|zinc finger protein 131##NM_003432|ZNF131|7690|zinc finger protein 131##AK310735|ZNF131|7690|zinc finger protein 131##BC017923|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131##AK307963|ZNF131|7690|zinc finger protein 131##BC036422|NIM1|167359|serine/threonine-protein kinase NIM1##NM_153361|NIM1|167359|serine/threonine-protein kinase NIM1##BC000297|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##BC082234|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##M15802|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##X66435|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##AK095492|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##AK315593|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##NM_001098272|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)##NM_002130|HMGCS1|3157|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)	0.976541	0.0	denovo_WM_7:49:0.953
chr11	66225396	66225506	reg1005664.p1	6.673	+	TSC_hg19_v1_chr11_-_66206308 BC108277 AB049638 AK290084 AK223112 BC005002 AF151871 NM_016050 NM_170738 NM_170739	-19165	-	AK096253 NM_178864 TSC_hg19_v1_chr11_+_66188505 AB049469 BC105001 BC105003 BC143630 EU446888	-36890	+	AF029358 BC093634 BC143335 X86681 TSC_hg19_v1_chr11_-_66139222 AF034102 AF401235 NM_001532	-86274	-	AK094060 AX748433 NM_001243135	8346	+	TSC_hg19_v1_chr11_-_66234176 AK127603	8741	-	TSC_hg19_v1_chr11_+_66234371 NM_001098510 NM_001243136 NM_145065 AL834395 BC021256 AK074201 BC025723	8902	+	BC108277|MRPL11|65003|mitochondrial ribosomal protein L11##AB049638|MRPL11|65003|mitochondrial ribosomal protein L11##AK290084|MRPL11|65003|mitochondrial ribosomal protein L11##AK223112|MRPL11|65003|mitochondrial ribosomal protein L11##BC005002|MRPL11|65003|mitochondrial ribosomal protein L11##AF151871|MRPL11|65003|mitochondrial ribosomal protein L11##NM_016050|MRPL11|65003|mitochondrial ribosomal protein L11##NM_170738|MRPL11|65003|mitochondrial ribosomal protein L11##NM_170739|MRPL11|65003|mitochondrial ribosomal protein L11##AK096253|NPAS4|266743|neuronal PAS domain protein 4##NM_178864|NPAS4|266743|neuronal PAS domain protein 4##AB049469|NPAS4|266743|neuronal PAS domain protein 4##BC105001|NPAS4|266743|neuronal PAS domain protein 4##BC105003|NPAS4|266743|neuronal PAS domain protein 4##BC143630|NPAS4|266743|neuronal PAS domain protein 4##EU446888|NPAS4|266743|neuronal PAS domain protein 4##AF029358|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##BC093634|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##BC143335|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##X86681|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AF034102|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AF401235|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##NM_001532|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AK094060|PELI3|246330|pellino homolog 3 (Drosophila)##NM_001243135|PELI3|246330|pellino homolog 3 (Drosophila)##AK127603|MRPL11|65003|mitochondrial ribosomal protein L11##NM_001098510|PELI3|246330|pellino homolog 3 (Drosophila)##NM_001243136|PELI3|246330|pellino homolog 3 (Drosophila)##NM_145065|PELI3|246330|pellino homolog 3 (Drosophila)##AL834395|PELI3|246330|pellino homolog 3 (Drosophila)##BC021256|PELI3|246330|pellino homolog 3 (Drosophila)##AK074201|PELI3|246330|pellino homolog 3 (Drosophila)##BC025723|PELI3|246330|pellino homolog 3 (Drosophila)	0.803698	0.0	denovo_WM_7:15:0.790
chr17	46914983	46915113	reg1005570.p1	6.673	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-6658	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-20624	-	CU689652 BC033563 NM_173623 AK310321	-43403	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	55137	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	70697	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	70786	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	0.821898	0.0	denovo_WM_7:-34:0.677
chr6	21686849	21687011	reg1006132.p1	6.673	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-20271	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-92558	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1152207	+	BC015850 NM_000948	610799	-	X54394 X54393 GQ305133 M58594 NM_001163558	616117	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	882795	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	1.98611	0.0	denovo_WM_7:85:0.747
chr3	7609495	7609615	reg1005522.p2	6.672	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-706657	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-706756	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-2380064	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	933775	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	933960	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	934026	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	1.132492	0.0	
chr8	99082928	99083108	reg1001153.p1	6.672	+	AK096872 NM_001170806 NM_173549 BC062359	-6241	+	BC095426 TSC_hg19_v1_chr8_-_99057774 AK312102 D28438 AK308890 NM_000989	-25222	-	L05095 TSC_hg19_v1_chr8_-_99057755	-25265	-	CR456844 CR541652 DQ892797 DQ896044 TSC_hg19_v1_chr8_-_99129361	46325	-	BC010280 TSC_hg19_v1_chr8_-_99129395 BC093059 BC012592 NM_005836 X95384	46383	-	TSC_hg19_v1_chr8_+_99129543 NM_001145860 NM_001145861 X99302 AK291434	46520	+	AK096872|C8orf47|203111|chromosome 8 open reading frame 47##NM_001170806|C8orf47|203111|chromosome 8 open reading frame 47##NM_173549|C8orf47|203111|chromosome 8 open reading frame 47##BC062359|C8orf47|203111|chromosome 8 open reading frame 47##BC095426|RPL30|6156|ribosomal protein L30##AK312102|RPL30|6156|ribosomal protein L30##D28438|RPL30|6156|ribosomal protein L30##AK308890|RPL30|6156|ribosomal protein L30##NM_000989|RPL30|6156|ribosomal protein L30##L05095|RPL30|6156|ribosomal protein L30##CR456844|HRSP12|10247|heat-responsive protein 12##CR541652|HRSP12|10247|heat-responsive protein 12##DQ892797|HRSP12|10247|heat-responsive protein 12##DQ896044|HRSP12|10247|heat-responsive protein 12##BC010280|HRSP12|10247|heat-responsive protein 12##BC093059|HRSP12|10247|heat-responsive protein 12##BC012592|HRSP12|10247|heat-responsive protein 12##NM_005836|HRSP12|10247|heat-responsive protein 12##X95384|HRSP12|10247|heat-responsive protein 12##NM_001145860|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145861|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##X99302|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##AK291434|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	1.922426	0.0	denovo_WM_7:-70:0.809	denovo_WM_7:-93:0.897
chr13	115084234	115084372	reg1004633.p1	6.671	+	TSC_hg19_v1_chr13_+_115080005 NM_001164144 NM_001164145 NM_032436 AK096346 BC065237	-4317	+	TSC_hg19_v1_chr13_+_115047085 AY013250 NM_023011 NM_080687 BC023569 BC047735 AK294545 AK302003 AF318575	-37189	+	TSC_hg19_v1_chr13_+_115000402 AK296424 BC017244 BC010875 AK315302 U18291 AB590520 AF164598 CU677877	-83841	+	None	None	None	None	None	None	None	None	None	NM_001164144|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_001164145|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_032436|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AK096346|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##BC065237|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AY013250|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_023011|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_080687|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC023569|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC047735|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK294545|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK302003|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AF318575|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK296424|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC017244|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC010875|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AK315302|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##U18291|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AF164598|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)	2.920659	0.0	denovo_WM_7:-2:0.303	denovo_WM_7:-3:0.621	denovo_WM_7:36:0.545	denovo_WM_7:37:0.418	denovo_WM_7:51:0.484	denovo_WM_7:52:0.497
chr8	123484992	123485136	reg1006234.p1	6.671	+	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	-831438	-	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-1660558	-	BC098573 TSC_hg19_v1_chr8_-_121824269	-1660794	-	TSC_hg19_v1_chr8_+_123793897 NM_014943	308847	+	BC042145 TSC_hg19_v1_chr8_+_123794000	308930	+	TSC_hg19_v1_chr8_+_123794108 AB020661	309039	+	BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC098573|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##AB020661|ZHX2|22882|zinc fingers and homeoboxes 2	1.920354	0.0	denovo_WM_7:-61:0.587	denovo_WM_7:-78:0.211	denovo_WM_7:-79:0.211	denovo_WM_7:-80:0.223	denovo_WM_7:-81:0.348
chr12	25517599	25517732	reg1001488.p2	6.670	+	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-113724	-	TSC_hg19_v1_chr12_-_25403822 BC013572	-113850	-	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-169459	+	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	188531	-	AK296816 NM_001145727	283822	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	594336	+	AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	0.0	0.0	
chr2	153263668	153263830	reg1005187.p1	6.670	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	-71776	+	TSC_hg19_v1_chr2_+_153191687 NM_052905	-72079	+	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	-231399	-	TSC_hg19_v1_chr2_-_153573924 U70667 AF049524 AF049528 BC000273 BC073138 BC011788 AF049523 AK298547 AK024810 BC029414 NM_017892	310171	-	TSC_hg19_v1_chr2_+_153574392 NM_152522 AK023109	310699	+	TSC_hg19_v1_chr2_+_153575123 AK315657	311366	+	BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2##NM_052905|FMNL2|114793|formin-like 2##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##U70667|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049524|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049528|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC000273|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC073138|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC011788|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049523|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK298547|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK024810|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC029414|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_017892|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_152522|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK023109|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK315657|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6	0.987169	0.0	denovo_WM_7:-34:0.723
chr1	83974278	83974390	reg1006119.p1	6.669	+	AF104266 AF104938 AF104939 NM_012302	-1708253	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-2202407	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-4501907	-	AK097722 TSC_hg19_v1_chr1_-_84326308	351934	-	TSC_hg19_v1_chr1_-_84326677 BC036594	352342	-	AK126792 BC048970 BC032829 TSC_hg19_v1_chr1_-_84464848 BC060878 BC028350 NM_024686	490462	-	AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK126792|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC048970|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC032829|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC060878|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC028350|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##NM_024686|TTLL7|79739|tubulin tyrosine ligase-like family, member 7	0.99486	0.0	denovo_WM_7:30:0.980
chr12	112513581	112513710	reg1006388.p2	6.668	+	X94910 TSC_hg19_v1_chr12_+_112451266 CR541667	-62380	+	TSC_hg19_v1_chr12_+_112451229 AK309426	-62415	+	NM_001034025 NM_006817 TSC_hg19_v1_chr12_+_112451212 BC101493 BC101495	-62459	+	TSC_hg19_v1_chr12_-_112546588 BC065481 AB054990 AK309772 AK307494 BC095484 BX647450 BC034357 BX641140 AK292485 BC113585 BC113587 NM_024953	32953	-	TSC_hg19_v1_chr12_+_112563341 AK309916 AK312601 NM_001143906 NM_006700	49677	+	TSC_hg19_v1_chr12_+_112563363 AK122620 AK291331 AK295474 AB007447	49746	+	X94910|ERP29|10961|endoplasmic reticulum protein 29##CR541667|ERP29|10961|endoplasmic reticulum protein 29##NM_001034025|ERP29|10961|endoplasmic reticulum protein 29##NM_006817|ERP29|10961|endoplasmic reticulum protein 29##BC101493|ERP29|10961|endoplasmic reticulum protein 29##BC101495|ERP29|10961|endoplasmic reticulum protein 29##BC065481|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AB054990|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK309772|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK307494|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC095484|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX647450|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC034357|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX641140|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK292485|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113585|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113587|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##NM_024953|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK309916|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK312601|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_001143906|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_006700|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK122620|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK291331|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK295474|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AB007447|TRAFD1|10906|TRAF-type zinc finger domain containing 1	0.971795	0.0	denovo_WM_7:50:0.521
chrX	148206250	148206396	reg1005073.p1	6.668	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	-405711	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	-624135	+	BC034320 NM_152578 AY211917 AK098602	-1143468	+	CU675281 AF050145 BC006170 TSC_hg19_v1_chrX_-_148586837 BX647357 L40586 M58342 AK294541 NM_000202 NM_001166550 NM_006123	380451	-	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	416107	-	NM_001171907 NM_001171908 NM_178124 U66049 AK294153 AY074889 AK291899 BC065539 BC104930 BC104932 BC143660 BC143661 BC143662	416271	+	AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2##NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##AF050145|IDS|3423|iduronate 2-sulfatase##BC006170|IDS|3423|iduronate 2-sulfatase##BX647357|IDS|3423|iduronate 2-sulfatase##L40586|IDS|3423|iduronate 2-sulfatase##M58342|IDS|3423|iduronate 2-sulfatase##AK294541|IDS|3423|iduronate 2-sulfatase##NM_000202|IDS|3423|iduronate 2-sulfatase##NM_001166550|IDS|3423|iduronate 2-sulfatase##NM_006123|IDS|3423|iduronate 2-sulfatase##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434##NM_001171907|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171908|CXorf40A|91966|chromosome X open reading frame 40A##NM_178124|CXorf40A|91966|chromosome X open reading frame 40A##U66049|CXorf40A|91966|chromosome X open reading frame 40A##AK294153|CXorf40A|91966|chromosome X open reading frame 40A##AY074889|CXorf40A|91966|chromosome X open reading frame 40A##AK291899|CXorf40A|91966|chromosome X open reading frame 40A##BC065539|CXorf40A|91966|chromosome X open reading frame 40A##BC104930|CXorf40A|91966|chromosome X open reading frame 40A##BC104932|CXorf40A|91966|chromosome X open reading frame 40A##BC143660|CXorf40A|91966|chromosome X open reading frame 40A##BC143661|CXorf40A|91966|chromosome X open reading frame 40A##BC143662|CXorf40A|91966|chromosome X open reading frame 40A	0.98781	0.0	denovo_WM_7:21:0.459	denovo_WM_7:22:0.484
chr1	14057356	14057536	reg1006060.p2	6.667	+	NM_012231 NM_015866 U17838	-26097	+	TSC_hg19_v1_chr1_+_14026688 BC014468 NM_001135610	-30722	+	NM_001006624 NM_001006625	-145480	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	18439	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	18477	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	18495	+	NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain##U17838|PRDM2|7799|PR domain containing 2, with ZNF domain##BC014468|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001135610|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001006624|PDPN|10630|podoplanin##NM_001006625|PDPN|10630|podoplanin##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain	0.981054	0.0	denovo_WM_7:-14:0.937
chr2	187506596	187506733	reg1007968.p1	6.667	+	AK302990 NM_001144999	-41733	+	TSC_hg19_v1_chr2_+_187455042 EF560727 M14648 AB527165	-51637	+	TSC_hg19_v1_chr2_+_187454760 AK302550 AK309711 NM_001145000 NM_002210 AB209894 BC126231 BC136442 BC144100	-51834	+	TSC_hg19_v1_chr2_+_187558788 AK091423 AK289737 AX746973 BC060872 NM_177454 AF361495 CU687488	52112	+	AK128006 BC031094 NM_182521	207232	-	DQ280491 U17473 L76380 AK291630 AK292998 DQ280490 NM_005795	806282	-	AK302990|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##NM_001144999|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##EF560727|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##M14648|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##AK302550|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##AK309711|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##NM_001145000|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##NM_002210|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##AB209894|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##BC126231|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##BC136442|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##BC144100|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##AK091423|FAM171B|165215|family with sequence similarity 171, member B##AK289737|FAM171B|165215|family with sequence similarity 171, member B##BC060872|FAM171B|165215|family with sequence similarity 171, member B##NM_177454|FAM171B|165215|family with sequence similarity 171, member B##AF361495|FAM171B|165215|family with sequence similarity 171, member B##AK128006|ZSWIM2|151112|zinc finger, SWIM-type containing 2##BC031094|ZSWIM2|151112|zinc finger, SWIM-type containing 2##NM_182521|ZSWIM2|151112|zinc finger, SWIM-type containing 2##DQ280491|CALCRL|10203|calcitonin receptor-like##U17473|CALCRL|10203|calcitonin receptor-like##L76380|CALCRL|10203|calcitonin receptor-like##AK291630|CALCRL|10203|calcitonin receptor-like##AK292998|CALCRL|10203|calcitonin receptor-like##NM_005795|CALCRL|10203|calcitonin receptor-like	0.0	0.935792	CTCF.p2:-14:0.936
chr15	91388461	91388566	reg1004634.p1	6.666	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	-127899	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-315317	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-456974	+	NM_002569 X17094	23371	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	39188	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	39760	+	BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene	0.0	0.0	
chr19	10347372	10347499	reg1004842.p2	6.664	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-5429	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-41708	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-41830	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	15212	+	TSC_hg19_v1_chr19_+_10362889 BC009858	15463	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	15557	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.990819	0.0	denovo_WM_7:42:0.237	denovo_WM_7:43:0.237	denovo_WM_7:44:0.237	denovo_WM_7:45:0.237
chr11	67136278	67136445	reg1005816.p2	6.663	+	AF179890 BC001334 TSC_hg19_v1_chr11_-_67121006 BC070250 AB209274 NM_021173	-15357	-	AK096155 TSC_hg19_v1_chr11_+_67085309	-51047	+	TSC_hg19_v1_chr11_+_67071027 AK074432 AK001790 AK094226 BC007709 AB527672 AB072360 AB099291	-65320	+	DQ891525 DQ894715 AB528390 AY049779 BC066229 BC066230 BC066231 AF172854 BC012939 AF176911 NM_013246	4745	-	AK298052 NM_001166212	5286	-	TSC_hg19_v1_chr11_+_67159464 BC014848 NM_004584 U53174 AK315348 CR536508	23107	+	AF179890|POLD4|57804|polymerase (DNA-directed), delta 4##BC001334|POLD4|57804|polymerase (DNA-directed), delta 4##BC070250|POLD4|57804|polymerase (DNA-directed), delta 4##AB209274|POLD4|57804|polymerase (DNA-directed), delta 4##NM_021173|POLD4|57804|polymerase (DNA-directed), delta 4##AK096155|LOC100130987|100130987|uncharacterized LOC100130987##AK074432|SSH3|54961|slingshot homolog 3 (Drosophila)##AK001790|SSH3|54961|slingshot homolog 3 (Drosophila)##AK094226|SSH3|54961|slingshot homolog 3 (Drosophila)##BC007709|SSH3|54961|slingshot homolog 3 (Drosophila)##AB072360|SSH3|54961|slingshot homolog 3 (Drosophila)##AB099291|SSH3|54961|slingshot homolog 3 (Drosophila)##DQ891525|CLCF1|23529|cardiotrophin-like cytokine factor 1##DQ894715|CLCF1|23529|cardiotrophin-like cytokine factor 1##AY049779|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066229|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066230|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066231|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF172854|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC012939|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF176911|CLCF1|23529|cardiotrophin-like cytokine factor 1##NM_013246|CLCF1|23529|cardiotrophin-like cytokine factor 1##AK298052|CLCF1|23529|cardiotrophin-like cytokine factor 1##NM_001166212|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC014848|RAD9A|5883|RAD9 homolog A (S. pombe)##NM_004584|RAD9A|5883|RAD9 homolog A (S. pombe)##U53174|RAD9A|5883|RAD9 homolog A (S. pombe)##AK315348|RAD9A|5883|RAD9 homolog A (S. pombe)##CR536508|RAD9A|5883|RAD9 homolog A (S. pombe)	1.342541	0.0	denovo_WM_7:32:0.253	denovo_WM_7:33:0.345
chr19	45957834	45957934	reg1005145.p1	6.663	+	TSC_hg19_v1_chr19_-_45927176 NM_001166049 NM_001983	-30709	-	TSC_hg19_v1_chr19_-_45927167 AF433652 AF001925 M13194 M28650	-30727	-	TSC_hg19_v1_chr19_-_45927109 BC008930 AB069681 AK314884	-30774	-	TSC_hg19_v1_chr19_+_45971253 EU178109 EU178110 EU178111 EU178112 EU178113 EU178114 EU178115 EU178116 L49169 NM_001114171 NM_006732 AK097324 AK225070 BC051767 BC036724 BC063042	13385	+	AF004224 TSC_hg19_v1_chr19_-_45996506 NM_206901	38609	-	TSC_hg19_v1_chr19_-_46000271 AF004222 BC014244 BC073874 AK291967 NM_005619 NM_206900	42363	-	NM_001166049|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##NM_001983|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AF433652|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AF001925|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##M13194|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##M28650|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##BC008930|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AB069681|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AK314884|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##EU178109|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178110|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178111|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178112|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178113|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178114|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178115|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178116|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##L49169|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##NM_001114171|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##NM_006732|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##AK225070|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##BC036724|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##BC063042|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##AF004224|RTN2|6253|reticulon 2##NM_206901|RTN2|6253|reticulon 2##AF004222|RTN2|6253|reticulon 2##BC014244|RTN2|6253|reticulon 2##BC073874|RTN2|6253|reticulon 2##AK291967|RTN2|6253|reticulon 2##NM_005619|RTN2|6253|reticulon 2##NM_206900|RTN2|6253|reticulon 2	0.979865	0.0	denovo_WM_7:-37:0.703
chr7	73898118	73898255	reg1006604.p2	6.663	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-29751	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-29878	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-30022	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	173835	+	TSC_hg19_v1_chr7_+_74072046 BC070484	173858	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	173936	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.989591	0.0	denovo_WM_7:8:0.904
chr1	24966981	24967156	reg1005539.p1	6.661	+	TSC_hg19_v1_chr1_+_24882611 NM_001010980 AK124519	-84469	+	HQ317426 JN203053 NM_001251980 NM_001251982 NM_001251985 EF467309 EF431960 EF529733 AF176116 TSC_hg19_v1_chr1_+_24840858 AY906854 DQ892434 DQ895645 AF176117	-126209	+	HQ317423 HQ317445 HQ317446 NM_001251978	-132985	+	AF419855 NM_005839 TSC_hg19_v1_chr1_+_24969669	2565	+	TSC_hg19_v1_chr1_+_24969763 BC011019 BC036187	2670	+	TSC_hg19_v1_chr1_+_24969792 AK302498	2711	+	NM_001010980|C1orf130|400746|chromosome 1 open reading frame 130##AK124519|C1orf130|400746|chromosome 1 open reading frame 130##HQ317426|RCAN3|11123|RCAN family member 3##JN203053|RCAN3|11123|RCAN family member 3##NM_001251980|RCAN3|11123|RCAN family member 3##NM_001251982|RCAN3|11123|RCAN family member 3##NM_001251985|RCAN3|11123|RCAN family member 3##EF467309|RCAN3|11123|RCAN family member 3##EF431960|RCAN3|11123|RCAN family member 3##EF529733|RCAN3|11123|RCAN family member 3##AF176116|RCAN3|11123|RCAN family member 3##AY906854|RCAN3|11123|RCAN family member 3##DQ892434|RCAN3|11123|RCAN family member 3##DQ895645|RCAN3|11123|RCAN family member 3##AF176117|RCAN3|11123|RCAN family member 3##HQ317423|RCAN3|11123|RCAN family member 3##NM_001251978|RCAN3|11123|RCAN family member 3##AF419855|SRRM1|10250|serine/arginine repetitive matrix 1##NM_005839|SRRM1|10250|serine/arginine repetitive matrix 1##BC011019|SRRM1|10250|serine/arginine repetitive matrix 1##BC036187|SRRM1|10250|serine/arginine repetitive matrix 1##AK302498|SRRM1|10250|serine/arginine repetitive matrix 1	1.986092	0.0	denovo_WM_7:6:0.253	denovo_WM_7:7:0.678
chr16	70097572	70097716	reg1004196.p1	6.661	+	AF521893 NM_182619 BC141808 AF428259 AF448856 AL833339 AK289884 AK298310 AK074773 EU831776 EU831854 CU687316 AK096051	-112552	+	BC078143 NM_001136214	-113019	+	AK126332 NM_199424 TSC_hg19_v1_chr16_+_69958904	-138742	+	AK292860 TSC_hg19_v1_chr16_-_70099722	2081	-	TSC_hg19_v1_chr16_-_70099842 AK027135 AL833251	2176	-	AB082521 BC150251 NM_017990	49884	+	AF521893|CLEC18A|348174|C-type lectin domain family 18, member A##NM_182619|CLEC18A|348174|C-type lectin domain family 18, member A##BC141808|CLEC18A|348174|C-type lectin domain family 18, member A##AF428259|CLEC18A|348174|C-type lectin domain family 18, member A##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK289884|CLEC18A|348174|C-type lectin domain family 18, member A##AK298310|CLEC18A|348174|C-type lectin domain family 18, member A##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##EU831776|CLEC18A|348174|C-type lectin domain family 18, member A##EU831854|CLEC18A|348174|C-type lectin domain family 18, member A##AK096051|CLEC18A|348174|C-type lectin domain family 18, member A##BC078143|CLEC18A|348174|C-type lectin domain family 18, member A##NM_001136214|CLEC18A|348174|C-type lectin domain family 18, member A##AK126332|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_199424|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AK292860|PDXDC2P|283970|pyridoxal-dependent decarboxylase domain containing 2, pseudogene##AL833251|PDXDC2P|283970|pyridoxal-dependent decarboxylase domain containing 2, pseudogene##AB082521|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##BC150251|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##NM_017990|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit	0.996849	0.0	denovo_WM_7:-41:0.841
chr3	88191482	88191633	reg1004810.p2	6.661	+	AF543494 NM_018293	-3296	+	BC052980 TSC_hg19_v1_chr3_-_88108150 AL117392 NM_001008390 NM_003663	-83414	-	NM_000866	-159832	+	NM_001195308 BC005222	7467	-	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	7471	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	965164	+	AF543494|ZNF654|55279|zinc finger protein 654##NM_018293|ZNF654|55279|zinc finger protein 654##BC052980|CGGBP1|8545|CGG triplet repeat binding protein 1##AL117392|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_001008390|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_003663|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_000866|HTR1F|3355|5-hydroxytryptamine (serotonin) receptor 1F##NM_001195308|CGGBP1|8545|CGG triplet repeat binding protein 1##BC005222|CGGBP1|8545|CGG triplet repeat binding protein 1##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3	0.146689	0.0	
chr7	36312013	36312138	reg1006572.p1	6.661	+	TSC_hg19_v1_chr7_+_36193025 AB051493	-119020	+	TSC_hg19_v1_chr7_+_36192862 AK027386 BC065518	-119192	+	TSC_hg19_v1_chr7_+_36192789 NM_030636	-119270	+	TSC_hg19_v1_chr7_-_36406811 BC056191 AB384038 BC136362 BC144032 AB020702 BC110422 NM_001199707 AK293912 AK294686 AK302559 NM_001199706 NM_015314 NM_001199708	94597	-	TSC_hg19_v1_chr7_+_36429470 BC070066 NM_018685 AK299803 AK291254 AF273437	117365	+	BC028678 NM_001100425	117639	-	AB051493|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AK027386|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##BC065518|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##NM_030636|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##BC056191|KIAA0895|23366|KIAA0895##BC136362|KIAA0895|23366|KIAA0895##BC144032|KIAA0895|23366|KIAA0895##AB020702|KIAA0895|23366|KIAA0895##BC110422|KIAA0895|23366|KIAA0895##NM_001199707|KIAA0895|23366|KIAA0895##AK293912|KIAA0895|23366|KIAA0895##AK294686|KIAA0895|23366|KIAA0895##AK302559|KIAA0895|23366|KIAA0895##NM_001199706|KIAA0895|23366|KIAA0895##NM_015314|KIAA0895|23366|KIAA0895##NM_001199708|KIAA0895|23366|KIAA0895##BC070066|ANLN|54443|anillin, actin binding protein##NM_018685|ANLN|54443|anillin, actin binding protein##AK299803|ANLN|54443|anillin, actin binding protein##AK291254|ANLN|54443|anillin, actin binding protein##AF273437|ANLN|54443|anillin, actin binding protein##BC028678|KIAA0895|23366|KIAA0895##NM_001100425|KIAA0895|23366|KIAA0895	0.984419	0.0	denovo_WM_7:48:0.487	denovo_WM_7:49:0.487
chr10	76658153	76658333	reg1006156.p1	6.659	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	-71889	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-721656	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-721713	+	AY686755 NM_001003892 BC137321 BC137322	160062	-	AB027004 AB103375 NM_016364	201004	-	BC009778 AY040091 AK057012 AY674051 AK291897 AK300679 AK127886 NM_001007271 NM_001007272 NM_001007273 AK291891	210671	-	AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13##BC009778|DUSP13|51207|dual specificity phosphatase 13##AY040091|DUSP13|51207|dual specificity phosphatase 13##AK057012|DUSP13|51207|dual specificity phosphatase 13##AY674051|DUSP13|51207|dual specificity phosphatase 13##AK291897|DUSP13|51207|dual specificity phosphatase 13##AK300679|DUSP13|51207|dual specificity phosphatase 13##AK127886|DUSP13|51207|dual specificity phosphatase 13##NM_001007271|DUSP13|51207|dual specificity phosphatase 13##NM_001007272|DUSP13|51207|dual specificity phosphatase 13##NM_001007273|DUSP13|51207|dual specificity phosphatase 13##AK291891|DUSP13|51207|dual specificity phosphatase 13	0.646374	0.0	denovo_WM_7:-24:0.246	denovo_WM_7:-25:0.250
chrX	13703563	13703702	reg1006270.p1	6.659	+	AK291271 AK315599 NM_152634 AK294465	-32366	+	NM_001167890 NM_015507 AK075214 AK300236 AJ245671 AF193055 AF186084 AK300137 AK315018 AY358333 BC038587 AL117610 CU691592 DQ890938	-115796	+	TSC_hg19_v1_chrX_-_13397507 D28370	-306127	-	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	3609	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	3661	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	49076	-	AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_001167890|EGFL6|25975|EGF-like-domain, multiple 6##NM_015507|EGFL6|25975|EGF-like-domain, multiple 6##AK075214|EGFL6|25975|EGF-like-domain, multiple 6##AK300236|EGFL6|25975|EGF-like-domain, multiple 6##AJ245671|EGFL6|25975|EGF-like-domain, multiple 6##AF193055|EGFL6|25975|EGF-like-domain, multiple 6##AF186084|EGFL6|25975|EGF-like-domain, multiple 6##AK300137|EGFL6|25975|EGF-like-domain, multiple 6##AK315018|EGFL6|25975|EGF-like-domain, multiple 6##AY358333|EGFL6|25975|EGF-like-domain, multiple 6##BC038587|EGFL6|25975|EGF-like-domain, multiple 6##AL117610|EGFL6|25975|EGF-like-domain, multiple 6##DQ890938|EGFL6|25975|EGF-like-domain, multiple 6##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2	0.0	0.0	
chr11	65325829	65325924	reg1005746.p1	6.658	+	TSC_hg19_v1_chr11_-_65325673 AK024477 NM_001130144 NM_001164266 NM_021070	-8	-	TSC_hg19_v1_chr11_-_65325391 AF135960 BC136277	-427	-	TSC_hg19_v1_chr11_-_65314049 AK090750	-11767	-	TSC_hg19_v1_chr11_-_65326129 AK299351	314	-	AF085877 TSC_hg19_v1_chr11_-_65337892 AK057616	11943	-	TSC_hg19_v1_chr11_+_65337947 AB001740 NM_006396 BC014791 DQ891782 DQ894966	12066	+	AK024477|LTBP3|4054|latent transforming growth factor beta binding protein 3##NM_001130144|LTBP3|4054|latent transforming growth factor beta binding protein 3##NM_001164266|LTBP3|4054|latent transforming growth factor beta binding protein 3##NM_021070|LTBP3|4054|latent transforming growth factor beta binding protein 3##AF135960|LTBP3|4054|latent transforming growth factor beta binding protein 3##BC136277|LTBP3|4054|latent transforming growth factor beta binding protein 3##AK090750|LTBP3|4054|latent transforming growth factor beta binding protein 3##AK299351|LTBP3|4054|latent transforming growth factor beta binding protein 3##AF085877|LOC254100|254100|uncharacterized LOC254100##AK057616|LOC254100|254100|uncharacterized LOC254100##AB001740|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##NM_006396|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##BC014791|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##DQ891782|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1##DQ894966|SSSCA1|10534|Sjogren syndrome/scleroderma autoantigen 1	0.98037	0.0	denovo_WM_7:42:0.445	denovo_WM_7:43:0.465
chr20	35012465	35012590	reg1005123.p1	6.658	+	NM_014902	-17084	+	TSC_hg19_v1_chr20_+_34894262 AB023181	-118272	+	TSC_hg19_v1_chr20_+_34824402 BC001751 BC019311 NM_015511	-188104	+	TSC_hg19_v1_chr20_+_35089870 NM_001042486 AK001681	77342	+	NM_183006 BC153874 TSC_hg19_v1_chr20_+_35090197 BC108706	77648	+	TSC_hg19_v1_chr20_+_35169892 NM_006097 NM_181526	157359	+	NM_014902|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##AB023181|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC001751|C20orf4|25980|chromosome 20 open reading frame 4##BC019311|C20orf4|25980|chromosome 20 open reading frame 4##NM_015511|C20orf4|25980|chromosome 20 open reading frame 4##NM_001042486|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##AK001681|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_183006|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC153874|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC108706|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_006097|MYL9|10398|myosin, light chain 9, regulatory##NM_181526|MYL9|10398|myosin, light chain 9, regulatory	0.695116	0.0	denovo_WM_7:-47:0.511
chr7	84922649	84922772	reg1004931.p2	6.658	+	AK309116 TSC_hg19_v1_chr7_-_84816296	-106475	-	NM_152754	-171464	-	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	-1098388	-	TSC_hg19_v1_chr7_+_86273224 BC041407 NM_000840	1350515	+	AK291406 TSC_hg19_v1_chr7_+_86273870	1351161	+	AK294701 TSC_hg19_v1_chr7_+_86274004 BC022496	1351281	+	AK309116|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##NM_152754|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##BC041407|GRM3|2913|glutamate receptor, metabotropic 3##NM_000840|GRM3|2913|glutamate receptor, metabotropic 3##AK291406|GRM3|2913|glutamate receptor, metabotropic 3##AK294701|GRM3|2913|glutamate receptor, metabotropic 3##BC022496|GRM3|2913|glutamate receptor, metabotropic 3	0.877059	0.0	denovo_WM_7:-18:0.809
chr8	141603614	141603794	reg1005961.p2	6.657	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-82141	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-82312	+	AK128755 NM_031466	-135027	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	41920	-	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	407552	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	535033	+	AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3	0.9982	0.0	
chr16	3173521	3173589	reg1007322.p1	6.655	+	TSC_hg19_v1_chr16_+_3162586 NM_001042428 NM_003456 AK313009 AF060865 BC002810	-10960	+	TSC_hg19_v1_chr16_-_3149286 AK074736	-24273	-	BC114452 AK027455 NM_032805	-30706	-	TSC_hg19_v1_chr16_-_3184862 AF098968	11316	-	AF017433 TSC_hg19_v1_chr16_+_3184980	11397	+	TSC_hg19_v1_chr16_+_3185058 NM_004220	11497	+	NM_001042428|ZNF205|7755|zinc finger protein 205##NM_003456|ZNF205|7755|zinc finger protein 205##AK313009|ZNF205|7755|zinc finger protein 205##AF060865|ZNF205|7755|zinc finger protein 205##BC002810|ZNF205|7755|zinc finger protein 205##AK074736|ZSCAN10|84891|zinc finger and SCAN domain containing 10##BC114452|ZSCAN10|84891|zinc finger and SCAN domain containing 10##AK027455|ZSCAN10|84891|zinc finger and SCAN domain containing 10##NM_032805|ZSCAN10|84891|zinc finger and SCAN domain containing 10##AF017433|ZNF213|7760|zinc finger protein 213##NM_004220|ZNF213|7760|zinc finger protein 213	0.0	0.0	
chr12	92517948	92518079	reg1004440.p2	6.653	+	NM_001920	-941208	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-941433	-	AK291309 BX571756 TSC_hg19_v1_chr12_-_91573325 NM_133503	-944702	-	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	21630	-	AJ845165 AJ845166 NM_001025233	299721	+	AJ845168 NM_001025232	303910	-	NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AK291309|DCN|1634|decorin##BX571756|DCN|1634|decorin##NM_133503|DCN|1634|decorin##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand	1.410012	0.0	denovo_WM_7:-23:0.511	denovo_WM_7:-24:0.330
chr16	20886047	20886191	reg1006012.p1	6.653	+	TSC_hg19_v1_chr16_+_20818060 AK314458 BC068503	-68075	+	NM_001144924 NM_001199053 NM_030941 TSC_hg19_v1_chr16_+_20817848 BC007646 AF332193 AL136763	-68303	+	AK292594 TSC_hg19_v1_chr16_-_20817795 AK304347 BC010503 NM_001142725 NM_080663 AK127391	-68334	-	AK308690 NM_020424	25437	+	BX648998 NM_173475 TSC_hg19_v1_chr16_-_20911681 BC040442 BX648185	25531	-	AK311415 NM_001128301 NM_001128302 TSC_hg19_v1_chr16_+_20912121 AK311881	26002	+	AK314458|LOC81691|81691|exonuclease NEF-sp##BC068503|LOC81691|81691|exonuclease NEF-sp##NM_001144924|LOC81691|81691|exonuclease NEF-sp##NM_001199053|LOC81691|81691|exonuclease NEF-sp##NM_030941|LOC81691|81691|exonuclease NEF-sp##BC007646|LOC81691|81691|exonuclease NEF-sp##AF332193|LOC81691|81691|exonuclease NEF-sp##AL136763|LOC81691|81691|exonuclease NEF-sp##AK292594|ERI2|112479|ERI1 exoribonuclease family member 2##AK304347|ERI2|112479|ERI1 exoribonuclease family member 2##BC010503|ERI2|112479|ERI1 exoribonuclease family member 2##NM_001142725|ERI2|112479|ERI1 exoribonuclease family member 2##NM_080663|ERI2|112479|ERI1 exoribonuclease family member 2##AK127391|ERI2|112479|ERI1 exoribonuclease family member 2##AK308690|LYRM1|57149|LYR motif containing 1##NM_020424|LYRM1|57149|LYR motif containing 1##BX648998|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##NM_173475|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##BC040442|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##AK311415|LYRM1|57149|LYR motif containing 1##NM_001128301|LYRM1|57149|LYR motif containing 1##NM_001128302|LYRM1|57149|LYR motif containing 1##AK311881|LYRM1|57149|LYR motif containing 1	0.939839	0.0	denovo_WM_7:28:0.903
chr10	91406754	91406896	reg1005684.p1	6.652	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-1501	-	TSC_hg19_v1_chr10_-_91404973 AK125428	-1882	-	AF355198 AY027662 AY027663 NM_138316 NM_148978	-3187	-	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	54550	+	TSC_hg19_v1_chr10_+_91498725 AK025628	91942	+	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	1210621	-	AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AK125428|PANK1|53354|pantothenate kinase 1##AF355198|PANK1|53354|pantothenate kinase 1##AY027662|PANK1|53354|pantothenate kinase 1##AY027663|PANK1|53354|pantothenate kinase 1##NM_138316|PANK1|53354|pantothenate kinase 1##NM_148978|PANK1|53354|pantothenate kinase 1##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AK025628|KIF20B|9585|kinesin family member 20B##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)	0.999844	0.0	
chr12	105503368	105503533	reg1006038.p1	6.651	+	TSC_hg19_v1_chr12_+_105501556 AB385420	-1883	+	TSC_hg19_v1_chr12_+_105501554 BC012556 BC104992 BC104994 BC143373	-1901	+	TSC_hg19_v1_chr12_+_105501539 BC110850	-1910	+	NM_001251905	123732	-	CU689714 AB527678 DQ892107 DQ895301 TSC_hg19_v1_chr12_-_105629989 AK001521 AK290562 AK297100 BC033731 BC028008 AY113704 NM_001251904 NM_018171	126460	-	TSC_hg19_v1_chr12_+_105724468 BC013920 NM_001145199 BC067897 BC045812 BC061920 AK056999 AJ311377	221021	+	BC012556|KIAA1033|23325|KIAA1033##BC104992|KIAA1033|23325|KIAA1033##BC104994|KIAA1033|23325|KIAA1033##BC143373|KIAA1033|23325|KIAA1033##BC110850|KIAA1033|23325|KIAA1033##NM_001251905|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ892107|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ895301|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK001521|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK290562|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK297100|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC033731|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC028008|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AY113704|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251904|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_018171|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC013920|C12orf75|387882|chromosome 12 open reading frame 75##NM_001145199|C12orf75|387882|chromosome 12 open reading frame 75##BC067897|C12orf75|387882|chromosome 12 open reading frame 75##BC045812|C12orf75|387882|chromosome 12 open reading frame 75##BC061920|C12orf75|387882|chromosome 12 open reading frame 75##AK056999|C12orf75|387882|chromosome 12 open reading frame 75##AJ311377|C12orf75|387882|chromosome 12 open reading frame 75	0.985014	0.0	
chr16	68772754	68772878	reg1003552.p1	6.651	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-1505	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-1571	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-1597	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	104689	+	AK291400 NM_001199280	366650	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	367324	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	1.987642	0.0	denovo_WM_7:30:0.967	denovo_WM_7:45:0.967
chr10	43105454	43105575	reg1006375.p1	6.650	+	AX721135 TSC_hg19_v1_chr10_-_43048257 AK308832 AK026980 BC045697 AX721116	-57312	-	TSC_hg19_v1_chr10_-_42863441 AF519622 AK131313	-242051	-	TSC_hg19_v1_chr10_-_38691741 BC171738 BC042387 BC048143	-4413758	-	TSC_hg19_v1_chr10_-_43134018 BC109232 BC160932 BC065181 BC107726 BC048313 AJ491697 NM_006955 AK096683 AK309564 AK304306 BC036398	28484	-	TSC_hg19_v1_chr10_-_43187188 AK123067	81676	-	NM_014753	172439	+	AK308832|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##AK026980|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##BC045697|ZNF37BP|100129482|zinc finger protein 37B, pseudogene##AF519622|LOC441666|441666|zinc finger protein 91 pseudogene##BC171738|SEPT7L|285961|septin 7-like##BC042387|SEPT7L|285961|septin 7-like##BC048143|SEPT7L|285961|septin 7-like##BC109232|ZNF33B|7582|zinc finger protein 33B##BC160932|ZNF33B|7582|zinc finger protein 33B##BC065181|ZNF33B|7582|zinc finger protein 33B##BC107726|ZNF33B|7582|zinc finger protein 33B##BC048313|ZNF33B|7582|zinc finger protein 33B##AJ491697|ZNF33B|7582|zinc finger protein 33B##NM_006955|ZNF33B|7582|zinc finger protein 33B##AK096683|ZNF33B|7582|zinc finger protein 33B##AK309564|ZNF33B|7582|zinc finger protein 33B##AK304306|ZNF33B|7582|zinc finger protein 33B##BC036398|ZNF33B|7582|zinc finger protein 33B##NM_014753|BMS1|9790|BMS1 homolog, ribosome assembly protein (yeast)	0.0	0.0	
chr12	102877471	102877619	reg1006710.p1	6.649	+	AB209184 NM_000618 NM_001111283 NM_001111285 TSC_hg19_v1_chr12_-_102874389	-3163	-	M11568 TSC_hg19_v1_chr12_-_102874344	-3203	-	AK312231 X57025 TSC_hg19_v1_chr12_-_102874323	-3223	-	TSC_hg19_v1_chr12_-_103310998 CU693178 AK298419 AK313383	433421	-	TSC_hg19_v1_chr12_-_103311062 BC026251	433518	-	L47726 NM_000277 U49897	433835	-	AB209184|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_000618|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111283|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111285|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##M11568|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK312231|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X57025|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK298419|PAH|5053|phenylalanine hydroxylase##AK313383|PAH|5053|phenylalanine hydroxylase##BC026251|PAH|5053|phenylalanine hydroxylase##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase	0.858151	0.0	denovo_WM_7:60:0.757
chr1	236116432	236116575	reg1005845.p1	6.649	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-86259	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-86320	-	BC022485 NM_001098721 NM_004485	-302450	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	111874	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	111922	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	111975	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	0.0	0.0	
chr6	111800630	111800806	reg1005472.p2	6.649	+	TSC_hg19_v1_chr6_+_111580568 BC036115	-220146	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	-220195	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-391923	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	3430	-	BC035823 TSC_hg19_v1_chr6_-_111804371	3635	-	AF071798 NM_002912 TSC_hg19_v1_chr6_-_111804420 AF058701	3706	-	BC036115|KIAA1919|91749|KIAA1919##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##BC035823|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF071798|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##NM_002912|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF058701|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.998388	0.0	denovo_WM_7:2:0.229	denovo_WM_7:3:0.229	denovo_WM_7:4:0.229	denovo_WM_7:5:0.229
chr2	70026521	70026665	reg1005868.p1	6.648	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	-57328	+	BC063672 NM_001153 BC000182 TSC_hg19_v1_chr2_+_69969232 AK293177	-57423	+	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	-155501	-	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	30214	+	TSC_hg19_v1_chr2_+_70056924 AB527982 EU832645 EU832722 CU675651	30378	+	NM_006857 TSC_hg19_v1_chr2_+_70121093 BC017890 X76302 AK291128 AK312041 CU676102	94506	+	BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##BC063672|ANXA4|307|annexin A4##NM_001153|ANXA4|307|annexin A4##BC000182|ANXA4|307|annexin A4##AK293177|ANXA4|307|annexin A4##NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832645|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832722|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_006857|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##BC017890|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##X76302|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK291128|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK312041|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)	0.0	0.0	
chr5	56482156	56482336	reg1006665.p1	6.648	+	BC113004 NM_001127235	-10973	+	TSC_hg19_v1_chr5_+_56469911 AL161991 AY226828	-12349	+	TSC_hg19_v1_chr5_+_56469684 AK311625 NM_001203246 NM_022913	-12532	+	NM_001127236 AL136844 AB463051 AM392551 AM393442	27682	+	BC137470 BC137473 BX648504 NM_001017992	296348	-	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	1273690	-	BC113004|GPBP1|65056|GC-rich promoter binding protein 1##NM_001127235|GPBP1|65056|GC-rich promoter binding protein 1##AL161991|GPBP1|65056|GC-rich promoter binding protein 1##AY226828|GPBP1|65056|GC-rich promoter binding protein 1##AK311625|GPBP1|65056|GC-rich promoter binding protein 1##NM_001203246|GPBP1|65056|GC-rich promoter binding protein 1##NM_022913|GPBP1|65056|GC-rich promoter binding protein 1##NM_001127236|GPBP1|65056|GC-rich promoter binding protein 1##AL136844|GPBP1|65056|GC-rich promoter binding protein 1##AM392551|GPBP1|65056|GC-rich promoter binding protein 1##AM393442|GPBP1|65056|GC-rich promoter binding protein 1##BC137470|ACTBL2|345651|actin, beta-like 2##BC137473|ACTBL2|345651|actin, beta-like 2##BX648504|ACTBL2|345651|actin, beta-like 2##NM_001017992|ACTBL2|345651|actin, beta-like 2##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2	1.440154	0.0	denovo_WM_7:-7:0.237	denovo_WM_7:-22:0.683	denovo_WM_7:-23:0.305
chr7	852949	853129	reg1005081.p2	6.647	+	BC026734 NM_001164758 NM_001164759	-85740	-	TSC_hg19_v1_chr7_-_766907 NM_001164760	-86113	-	TSC_hg19_v1_chr7_+_766769 AK056233	-86248	+	BC013613 NM_001171946	2154	+	NM_001171944 NM_001171945 NM_025154 TSC_hg19_v1_chr7_+_856279 AK022816 AK302896 AK309120 AK022469 BX538211 BC151827 AB018353 BC152418	3243	+	BC142707 NM_001130965 AB463335 CU680640	19109	+	BC026734|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##NM_001164758|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##NM_001164759|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##NM_001164760|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##AK056233|HEATR2|54919|HEAT repeat containing 2##BC013613|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171946|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171944|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171945|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_025154|SUN1|23353|Sad1 and UNC84 domain containing 1##AK022816|SUN1|23353|Sad1 and UNC84 domain containing 1##AK302896|SUN1|23353|Sad1 and UNC84 domain containing 1##AK309120|SUN1|23353|Sad1 and UNC84 domain containing 1##AK022469|SUN1|23353|Sad1 and UNC84 domain containing 1##BX538211|SUN1|23353|Sad1 and UNC84 domain containing 1##BC151827|SUN1|23353|Sad1 and UNC84 domain containing 1##AB018353|SUN1|23353|Sad1 and UNC84 domain containing 1##BC152418|SUN1|23353|Sad1 and UNC84 domain containing 1##BC142707|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001130965|SUN1|23353|Sad1 and UNC84 domain containing 1	0.0	0.0	
chr13	44333169	44333277	reg1004589.p1	6.646	+	BC024178 NM_001127615	-129613	-	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	-735521	+	AF126743 AY248898 NM_013238	-735874	+	TSC_hg19_v1_chr13_-_44361107 BC068521 NM_001242863 NM_017993	27860	-	NM_001128303	120196	+	NM_144974 AK056408	120602	-	BC024178|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001127615|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC068521|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001242863|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_017993|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001128303|LACC1|144811|laccase (multicopper oxidoreductase) domain containing 1##NM_144974|CCDC122|160857|coiled-coil domain containing 122##AK056408|CCDC122|160857|coiled-coil domain containing 122	0.991669	0.0	
chr17	60535302	60535413	reg1006848.p1	6.646	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	-34094	+	AK098684 NM_173503 BC101752 BC101778	-77431	+	NM_001144933	-87779	+	TSC_hg19_v1_chr17_+_60556483 NM_001112707 NM_006852 BC044925 AF162667 AX775745 AX775747	21238	+	TSC_hg19_v1_chr17_+_60704751 AB014609 BC153884 NM_006039	169400	+	BC146647 TSC_hg19_v1_chr17_+_60705048 AF134838	169688	+	NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##NM_001112707|TLK2|11011|tousled-like kinase 2##NM_006852|TLK2|11011|tousled-like kinase 2##BC044925|TLK2|11011|tousled-like kinase 2##AF162667|TLK2|11011|tousled-like kinase 2##AB014609|MRC2|9902|mannose receptor, C type 2##BC153884|MRC2|9902|mannose receptor, C type 2##NM_006039|MRC2|9902|mannose receptor, C type 2##BC146647|MRC2|9902|mannose receptor, C type 2##AF134838|MRC2|9902|mannose receptor, C type 2	0.866592	0.0	denovo_WM_7:41:0.249	denovo_WM_7:42:0.603
chr13	47162616	47162783	reg1006232.p2	6.645	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-35192	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-35279	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-35376	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	208616	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	308368	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1412752	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.994601	0.0	
chr2	197535189	197535323	reg1006574.p2	6.645	+	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	-30899	+	BC117194 BC117198 AB037722 NM_020760	-77964	-	TSC_hg19_v1_chr2_-_197036310 NM_004226	-498938	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	129157	-	BC137150 BC137151 AY358249 NM_213608	139681	-	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	256188	-	AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_004226|STK17B|9262|serine/threonine kinase 17b##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1	0.990402	0.0	denovo_WM_7:25:0.776
chr6	89949198	89949326	reg1005566.p1	6.645	+	AK313609 NM_002042	-21767	-	TSC_hg19_v1_chr6_+_89855838 BC035036 NM_001010853 AK302464 BC045583	-93381	+	AF449428 AB527997 CU692392 TSC_hg19_v1_chr6_-_89827756 AK314008 BC021715 NM_080743	-121560	-	BC130352 BC130354 M86868 NM_002043	75689	-	AB464335 DQ895144 EU176317 AF161502 U93243 TSC_hg19_v1_chr6_-_90062340	113054	-	AJ245898 TSC_hg19_v1_chr6_-_90062433 AF151834	113131	-	AK313609|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##NM_002042|GABRR1|2569|gamma-aminobutyric acid (GABA) receptor, rho 1##BC035036|PM20D2|135293|peptidase M20 domain containing 2##NM_001010853|PM20D2|135293|peptidase M20 domain containing 2##AK302464|PM20D2|135293|peptidase M20 domain containing 2##BC045583|PM20D2|135293|peptidase M20 domain containing 2##AF449428|SRSF12|135295|serine/arginine-rich splicing factor 12##AK314008|SRSF12|135295|serine/arginine-rich splicing factor 12##BC021715|SRSF12|135295|serine/arginine-rich splicing factor 12##NM_080743|SRSF12|135295|serine/arginine-rich splicing factor 12##BC130352|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##BC130354|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##M86868|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##NM_002043|GABRR2|2570|gamma-aminobutyric acid (GABA) receptor, rho 2##DQ895144|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##EU176317|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF161502|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##U93243|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AJ245898|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AF151834|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U	1.670132	0.841559	denovo_WM_7:18:0.530	denovo_WM_7:33:0.546	CTCF.p2:-39:0.842
chr1	11186081	11186186	reg1001980.p1	6.643	+	TSC_hg19_v1_chr1_-_11159916 AB209236 AB527852 EU832630 EU832705 AK294058 AK296559 BC039901 BC008460 AK308778 X66113 L01457 BC028687 NM_001001998 NM_002685 BC073788	-26242	-	TSC_hg19_v1_chr1_-_11120090 NM_003132	-66047	-	TSC_hg19_v1_chr1_-_11120076 M34338	-66055	-	AK024393 TSC_hg19_v1_chr1_-_11188945	2741	-	AB593027 AK313716 BC001881 NM_021146 AB593026 AY358301	63250	+	TSC_hg19_v1_chr1_-_11322572 L34075 U88966	136429	-	AB209236|EXOSC10|5394|exosome component 10##EU832630|EXOSC10|5394|exosome component 10##EU832705|EXOSC10|5394|exosome component 10##AK294058|EXOSC10|5394|exosome component 10##AK296559|EXOSC10|5394|exosome component 10##BC039901|EXOSC10|5394|exosome component 10##BC008460|EXOSC10|5394|exosome component 10##AK308778|EXOSC10|5394|exosome component 10##X66113|EXOSC10|5394|exosome component 10##L01457|EXOSC10|5394|exosome component 10##BC028687|EXOSC10|5394|exosome component 10##NM_001001998|EXOSC10|5394|exosome component 10##NM_002685|EXOSC10|5394|exosome component 10##BC073788|EXOSC10|5394|exosome component 10##NM_003132|SRM|6723|spermidine synthase##M34338|SRM|6723|spermidine synthase##AB593027|ANGPTL7|10218|angiopoietin-like 7##AK313716|ANGPTL7|10218|angiopoietin-like 7##BC001881|ANGPTL7|10218|angiopoietin-like 7##NM_021146|ANGPTL7|10218|angiopoietin-like 7##AB593026|ANGPTL7|10218|angiopoietin-like 7##AY358301|ANGPTL7|10218|angiopoietin-like 7##L34075|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)##U88966|MTOR|2475|mechanistic target of rapamycin (serine/threonine kinase)	0.999663	0.0	
chr4	116436979	116437152	reg1004994.p1	6.643	+	BC113075 BC012326 AK289670 AB036429 NM_022569	-402084	-	NM_003360 U30930	-893543	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-917482	+	AK074617 BC030831 NM_152402	1569668	-	TSC_hg19_v1_chr4_+_118954764 AY358852	2517706	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	2518510	+	BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	0.999661	0.0	denovo_WM_7:-69:0.425	denovo_WM_7:-70:0.425
chr5	169228743	169228913	reg1003645.p4	6.643	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-164528	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-164584	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-218107	+	AK055998 NM_001129891	178915	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	304143	+	BC030767 NM_001102609 BC092511	431168	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.997348	0.0	denovo_WM_7:-3:0.793
chr17	48290468	48290608	reg1004335.p1	6.640	+	TSC_hg19_v1_chr17_-_48278993 BC036531 Z74615 NM_000088	-11545	-	AB384988 DQ893571 EU176569 CU691368 M36546 X07884 AB209597 TSC_hg19_v1_chr17_-_48278986	-11608	-	S67495 TSC_hg19_v1_chr17_-_48274424	-16125	-	AY358204 NM_001168215	58228	+	NM_153229 AK090637 AX746552 BC064507	61285	+	TSC_hg19_v1_chr17_+_48423495 AJ277442 NM_022167 BC052262 AK299999 BC036069 AY358090	132928	+	BC036531|COL1A1|1277|collagen, type I, alpha 1##Z74615|COL1A1|1277|collagen, type I, alpha 1##NM_000088|COL1A1|1277|collagen, type I, alpha 1##DQ893571|COL1A1|1277|collagen, type I, alpha 1##EU176569|COL1A1|1277|collagen, type I, alpha 1##M36546|COL1A1|1277|collagen, type I, alpha 1##X07884|COL1A1|1277|collagen, type I, alpha 1##AB209597|COL1A1|1277|collagen, type I, alpha 1##AY358204|TMEM92|162461|transmembrane protein 92##NM_001168215|TMEM92|162461|transmembrane protein 92##NM_153229|TMEM92|162461|transmembrane protein 92##AK090637|TMEM92|162461|transmembrane protein 92##BC064507|TMEM92|162461|transmembrane protein 92##AJ277442|XYLT2|64132|xylosyltransferase II##NM_022167|XYLT2|64132|xylosyltransferase II##BC052262|XYLT2|64132|xylosyltransferase II##AK299999|XYLT2|64132|xylosyltransferase II##BC036069|XYLT2|64132|xylosyltransferase II##AY358090|XYLT2|64132|xylosyltransferase II	0.999939	0.0	denovo_WM_7:-96:0.842
chr5	111922416	111922558	reg1006542.p2	6.640	+	AB030240 BC114942 BC114632 TSC_hg19_v1_chr5_-_111754966 BC031042 NM_022140	-167614	-	TSC_hg19_v1_chr5_+_111496560 AB002437	-425918	+	AK298779 NM_001142474 NM_001142475	-609913	-	TSC_hg19_v1_chr5_+_112043199 NM_001127511 AK294544	120724	+	NM_000038 NM_001127510 TSC_hg19_v1_chr5_+_112073584 BC034955 BC056268 AB210001	151086	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	274442	+	AB030240|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114942|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114632|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC031042|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##NM_022140|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##AB002437|EPB41L4A-AS1|114915|EPB41L4A antisense RNA 1 (non-protein coding)##AK298779|C5orf13|9315|chromosome 5 open reading frame 13##NM_001142474|C5orf13|9315|chromosome 5 open reading frame 13##NM_001142475|C5orf13|9315|chromosome 5 open reading frame 13##NM_001127511|APC|324|adenomatous polyposis coli##AK294544|APC|324|adenomatous polyposis coli##NM_000038|APC|324|adenomatous polyposis coli##NM_001127510|APC|324|adenomatous polyposis coli##BC034955|APC|324|adenomatous polyposis coli##BC056268|APC|324|adenomatous polyposis coli##AB210001|APC|324|adenomatous polyposis coli##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa	0.0	0.0	
chr6	157886052	157886232	reg1004724.p1	6.640	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-83603	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-140925	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-141558	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	358147	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	358232	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	516745	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	1.054385	0.0	
chr1	45933002	45933128	reg1003322.p1	6.638	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-127165	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-127192	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-127236	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	23768	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	32874	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	54513	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	0.962433	0.0	denovo_WM_7:-38:0.840
chr5	17315173	17315349	reg1005811.p1	6.638	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-97421	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-97649	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-378876	-	AK295087 BC031051 NM_001167667 NM_004934	2673061	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4144348	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4144387	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.985164	0.0	denovo_WM_7:3:0.766
chr7	100464910	100465053	reg1006771.p1	6.638	+	AF284422 TSC_hg19_v1_chr7_+_100450374 AK128873 AB033284	-14588	+	NM_020246 BC000154 TSC_hg19_v1_chr7_+_100450361	-14617	+	TSC_hg19_v1_chr7_+_100450340 AK301411	-14641	+	NM_003302 AF000974 CR749505 TSC_hg19_v1_chr7_+_100465027 AK309312 AK056773 AK291906 BC028985 BC004249 BC021540 BC002680 BC004999 AJ001902 AB529171 DQ892893 DQ896140 CU678636 AB628085 AB628086 AB628087 AB628088	53	+	TSC_hg19_v1_chr7_+_100472697 AK302820 NM_001128852 NM_001128853 NM_001128854 NM_015908	7715	+	TSC_hg19_v1_chr7_+_100472725 AK311728	7743	+	AF284422|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##AK128873|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##AB033284|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##NM_020246|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##BC000154|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##AK301411|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##NM_003302|TRIP6|7205|thyroid hormone receptor interactor 6##AF000974|TRIP6|7205|thyroid hormone receptor interactor 6##CR749505|TRIP6|7205|thyroid hormone receptor interactor 6##AK309312|TRIP6|7205|thyroid hormone receptor interactor 6##AK056773|TRIP6|7205|thyroid hormone receptor interactor 6##AK291906|TRIP6|7205|thyroid hormone receptor interactor 6##BC028985|TRIP6|7205|thyroid hormone receptor interactor 6##BC004249|TRIP6|7205|thyroid hormone receptor interactor 6##BC021540|TRIP6|7205|thyroid hormone receptor interactor 6##BC002680|TRIP6|7205|thyroid hormone receptor interactor 6##BC004999|TRIP6|7205|thyroid hormone receptor interactor 6##AJ001902|TRIP6|7205|thyroid hormone receptor interactor 6##DQ892893|TRIP6|7205|thyroid hormone receptor interactor 6##DQ896140|TRIP6|7205|thyroid hormone receptor interactor 6##AB628085|TRIP6|7205|thyroid hormone receptor interactor 6##AB628086|TRIP6|7205|thyroid hormone receptor interactor 6##AB628087|TRIP6|7205|thyroid hormone receptor interactor 6##AB628088|TRIP6|7205|thyroid hormone receptor interactor 6##AK302820|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001128852|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001128853|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001128854|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_015908|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##AK311728|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)	0.33	0.0	
chr9	132769510	132769690	reg1002519.p1	6.638	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-171835	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-171878	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-171916	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	35754	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	35888	-	BC039728 NM_001136557 NM_001136558 NM_020960	46384	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	1.975718	0.0	denovo_WM_7:-57:0.840	denovo_WM_7:-72:0.448	denovo_WM_7:-73:0.513
chr9	117372192	117372320	reg1006653.p2	6.637	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	-22149	+	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	-22218	+	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	-104526	-	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	1513	+	NM_001199233	72112	-	AY434464 NM_001204344	182553	-	CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91##NM_001199233|LOC100505478|100505478|uncharacterized LOC100505478##AY434464|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001204344|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15	0.9975	0.0	denovo_WM_7:73:0.884
chr17	40757924	40757990	reg1006967.p2	6.636	+	TSC_hg19_v1_chr17_-_40729727 AB528689 GQ851964 GQ851965 AF440240 AB030304 NM_013290 NM_016556 FJ952179 FJ952180 FJ952181 FJ952182 FJ952183 BC008792	-28209	-	TSC_hg19_v1_chr17_+_40719130 AF203978 AK314378 AB527756 BT009812	-38819	+	TSC_hg19_v1_chr17_+_40719119 NM_170607 NM_198204 NM_198205 AF213666 AF213667 AF213668 BC010689 AK290258 AK296114 BC014537 AK000150 AK303221 AK309628 AK315432	-38861	+	BX647175 CU690614 TSC_hg19_v1_chr17_-_40761363	3394	-	NM_001070	3400	+	TSC_hg19_v1_chr17_-_40761382 AK294791	3418	-	GQ851964|PSMC3IP|29893|PSMC3 interacting protein##GQ851965|PSMC3IP|29893|PSMC3 interacting protein##AF440240|PSMC3IP|29893|PSMC3 interacting protein##AB030304|PSMC3IP|29893|PSMC3 interacting protein##NM_013290|PSMC3IP|29893|PSMC3 interacting protein##NM_016556|PSMC3IP|29893|PSMC3 interacting protein##FJ952179|PSMC3IP|29893|PSMC3 interacting protein##FJ952180|PSMC3IP|29893|PSMC3 interacting protein##FJ952181|PSMC3IP|29893|PSMC3 interacting protein##FJ952182|PSMC3IP|29893|PSMC3 interacting protein##FJ952183|PSMC3IP|29893|PSMC3 interacting protein##BC008792|PSMC3IP|29893|PSMC3 interacting protein##AF203978|MLX|6945|MAX-like protein X##AK314378|MLX|6945|MAX-like protein X##BT009812|MLX|6945|MAX-like protein X##NM_170607|MLX|6945|MAX-like protein X##NM_198204|MLX|6945|MAX-like protein X##NM_198205|MLX|6945|MAX-like protein X##AF213666|MLX|6945|MAX-like protein X##AF213667|MLX|6945|MAX-like protein X##AF213668|MLX|6945|MAX-like protein X##BC010689|MLX|6945|MAX-like protein X##AK290258|MLX|6945|MAX-like protein X##AK296114|MLX|6945|MAX-like protein X##BC014537|MLX|6945|MAX-like protein X##AK000150|MLX|6945|MAX-like protein X##AK303221|MLX|6945|MAX-like protein X##AK309628|MLX|6945|MAX-like protein X##AK315432|MLX|6945|MAX-like protein X##BX647175|FAM134C|162427|family with sequence similarity 134, member C##NM_001070|TUBG1|7283|tubulin, gamma 1##AK294791|FAM134C|162427|family with sequence similarity 134, member C	0.0	0.0	
chr5	158608227	158608407	reg1005610.p2	6.636	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	-81575	-	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-81860	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1322227	-	AK304228 NM_001199382	26331	-	AK056513 NM_144726	26516	-	AK311433 AK304435 NM_001199381	26792	-	BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145##AK311433|RNF145|153830|ring finger protein 145##AK304435|RNF145|153830|ring finger protein 145##NM_001199381|RNF145|153830|ring finger protein 145	0.0	0.0	
chr7	122055601	122055753	reg1007727.p1	6.636	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-111088	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-271388	-	TSC_hg19_v1_chr7_+_121513214 U88967	-542456	+	BC022038 AF447589 NM_139175 AK098524	283520	-	AK058116 AK098654 BC029264 NM_198085	287315	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	470821	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	0.991864	0.041421	
chr12	123942581	123942719	reg1000637.p1	6.635	+	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	-21409	-	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	-21638	-	AY064546 TSC_hg19_v1_chr12_+_123873657	-69021	+	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	53	+	BC093671 BC111955 NM_180699	1735	+	BC089444 TSC_hg19_v1_chr12_-_124018263 NM_178314	75524	-	AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC093671|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC111955|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##NM_180699|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC089444|RILPL1|353116|Rab interacting lysosomal protein-like 1##NM_178314|RILPL1|353116|Rab interacting lysosomal protein-like 1	0.0	0.0	
chr22	18632654	18632800	reg1005830.p1	6.635	+	TSC_hg19_v1_chr22_+_18593574 AJ245922 CR456600 BC104845 BC074827 AK315316	-39144	+	TSC_hg19_v1_chr22_+_18593455 AK056947 NM_001193414 NM_018943	-39264	+	TSC_hg19_v1_chr22_+_18560755 NM_001127649 BC016280 BC047320	-71960	+	TSC_hg19_v1_chr22_+_18632731 NM_017414	7	+	TSC_hg19_v1_chr22_+_18632936 AK313385 AL136690 BC014896	175	+	NM_005675 AF228707 TSC_hg19_v1_chr22_+_18893832 AK315115 BC047039 CR456434 AK098780 AB528122 CU012994 CU013282	261083	+	AJ245922|TUBA8|51807|tubulin, alpha 8##CR456600|TUBA8|51807|tubulin, alpha 8##BC104845|TUBA8|51807|tubulin, alpha 8##BC074827|TUBA8|51807|tubulin, alpha 8##AK315316|TUBA8|51807|tubulin, alpha 8##AK056947|TUBA8|51807|tubulin, alpha 8##NM_001193414|TUBA8|51807|tubulin, alpha 8##NM_018943|TUBA8|51807|tubulin, alpha 8##NM_001127649|PEX26|55670|peroxisomal biogenesis factor 26##BC016280|PEX26|55670|peroxisomal biogenesis factor 26##BC047320|PEX26|55670|peroxisomal biogenesis factor 26##NM_017414|USP18|11274|ubiquitin specific peptidase 18##AK313385|USP18|11274|ubiquitin specific peptidase 18##AL136690|USP18|11274|ubiquitin specific peptidase 18##BC014896|USP18|11274|ubiquitin specific peptidase 18##NM_005675|DGCR6|8214|DiGeorge syndrome critical region gene 6##AF228707|DGCR6|8214|DiGeorge syndrome critical region gene 6##AK315115|DGCR6|8214|DiGeorge syndrome critical region gene 6##BC047039|DGCR6|8214|DiGeorge syndrome critical region gene 6##CR456434|DGCR6|8214|DiGeorge syndrome critical region gene 6##AK098780|DGCR6|8214|DiGeorge syndrome critical region gene 6##CU012994|DGCR6|8214|DiGeorge syndrome critical region gene 6##CU013282|DGCR6|8214|DiGeorge syndrome critical region gene 6	0.999644	0.0	
chr4	116871264	116871421	reg1005879.p1	6.635	+	BC113075 BC012326 AK289670 AB036429 NM_022569	-836361	-	NM_003360 U30930	-1327820	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-1351759	+	AK074617 BC030831 NM_152402	1135391	-	TSC_hg19_v1_chr4_+_118954764 AY358852	2083429	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	2084233	+	BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	0.998648	0.0	denovo_WM_7:-12:0.457	denovo_WM_7:-13:0.457
chr3	10021620	10021747	reg1005620.p2	6.634	+	BC089447 AK296317 TSC_hg19_v1_chr3_-_9994093 AY358158 AK090993 AX746722 BC040508 NM_207351	-27605	-	TSC_hg19_v1_chr3_+_9975538 AL050275 NM_015513 NM_001031717 NM_001077415 BC008720 AY358363 AK314113	-46137	+	NM_001203263 NM_001203264 NM_001203265 NM_032732 NM_153460 AK092907 AK290670 AK294616 AK295377 AK315024 AX747801 AY359098 NM_153461 AK075534 AK096824 AK308241 AF458065 BC006411 AK225650 AY358840 AK315053 AK303171 EF676032	-62882	+	CU692722 TSC_hg19_v1_chr3_-_10028505 BC022807	6742	-	BC010883 TSC_hg19_v1_chr3_-_10028526 AK312008 AK172843 AF157321 AK222953 NM_018447	6843	-	TSC_hg19_v1_chr3_+_10028599 AK092352 AX747493	6907	+	BC089447|PRRT3|285368|proline-rich transmembrane protein 3##AY358158|PRRT3|285368|proline-rich transmembrane protein 3##AK090993|PRRT3|285368|proline-rich transmembrane protein 3##BC040508|PRRT3|285368|proline-rich transmembrane protein 3##NM_207351|PRRT3|285368|proline-rich transmembrane protein 3##AL050275|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_015513|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001031717|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001077415|CRELD1|78987|cysteine-rich with EGF-like domains 1##BC008720|CRELD1|78987|cysteine-rich with EGF-like domains 1##AY358363|CRELD1|78987|cysteine-rich with EGF-like domains 1##AK314113|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001203263|IL17RC|84818|interleukin 17 receptor C##NM_001203264|IL17RC|84818|interleukin 17 receptor C##NM_001203265|IL17RC|84818|interleukin 17 receptor C##NM_032732|IL17RC|84818|interleukin 17 receptor C##NM_153460|IL17RC|84818|interleukin 17 receptor C##AK092907|IL17RC|84818|interleukin 17 receptor C##AK290670|IL17RC|84818|interleukin 17 receptor C##AK294616|IL17RC|84818|interleukin 17 receptor C##AK295377|IL17RC|84818|interleukin 17 receptor C##AK315024|IL17RC|84818|interleukin 17 receptor C##AY359098|IL17RC|84818|interleukin 17 receptor C##NM_153461|IL17RC|84818|interleukin 17 receptor C##AK075534|IL17RC|84818|interleukin 17 receptor C##AK096824|IL17RC|84818|interleukin 17 receptor C##AK308241|IL17RC|84818|interleukin 17 receptor C##AF458065|IL17RC|84818|interleukin 17 receptor C##BC006411|IL17RC|84818|interleukin 17 receptor C##AK225650|IL17RC|84818|interleukin 17 receptor C##AY358840|IL17RC|84818|interleukin 17 receptor C##AK315053|IL17RC|84818|interleukin 17 receptor C##AK303171|IL17RC|84818|interleukin 17 receptor C##EF676032|IL17RC|84818|interleukin 17 receptor C##BC022807|TMEM111|55831|transmembrane protein 111##BC010883|TMEM111|55831|transmembrane protein 111##AK312008|TMEM111|55831|transmembrane protein 111##AK172843|TMEM111|55831|transmembrane protein 111##AF157321|TMEM111|55831|transmembrane protein 111##AK222953|TMEM111|55831|transmembrane protein 111##NM_018447|TMEM111|55831|transmembrane protein 111##AK092352|LOC442075|442075|uncharacterized LOC442075	0.991002	0.0	denovo_WM_7:22:0.330	denovo_WM_7:23:0.330	denovo_WM_7:24:0.330
chr2	241981057	241981221	reg1005426.p1	6.633	+	NM_001080437	-42885	+	AK056601 NM_001085437	-145567	-	BC125154 BC125155 AK026324 NM_024861 AK096434	-149720	-	TSC_hg19_v1_chr2_-_242041703 BC053533 AK093695 AK291665 AK294192 BX648184 AK131298 AF161359 AK296515 NM_182501	60587	-	TSC_hg19_v1_chr2_-_242088865 D50925 AF387103 BC063585 AK056516 AK302417 BC050565 AK302561 NM_001252119 NM_001252122 NM_001252124 NM_015148	107732	-	AK308015 BC051689 TSC_hg19_v1_chr2_+_242089094	107919	+	NM_001080437|SNED1|25992|sushi, nidogen and EGF-like domains 1##AK056601|C2orf54|79919|chromosome 2 open reading frame 54##NM_001085437|C2orf54|79919|chromosome 2 open reading frame 54##BC125154|C2orf54|79919|chromosome 2 open reading frame 54##BC125155|C2orf54|79919|chromosome 2 open reading frame 54##AK026324|C2orf54|79919|chromosome 2 open reading frame 54##NM_024861|C2orf54|79919|chromosome 2 open reading frame 54##AK096434|C2orf54|79919|chromosome 2 open reading frame 54##BC053533|MTERFD2|130916|MTERF domain containing 2##AK093695|MTERFD2|130916|MTERF domain containing 2##AK291665|MTERFD2|130916|MTERF domain containing 2##AK294192|MTERFD2|130916|MTERF domain containing 2##BX648184|MTERFD2|130916|MTERF domain containing 2##AK131298|MTERFD2|130916|MTERF domain containing 2##AF161359|MTERFD2|130916|MTERF domain containing 2##AK296515|MTERFD2|130916|MTERF domain containing 2##NM_182501|MTERFD2|130916|MTERF domain containing 2##D50925|PASK|23178|PAS domain containing serine/threonine kinase##AF387103|PASK|23178|PAS domain containing serine/threonine kinase##BC063585|PASK|23178|PAS domain containing serine/threonine kinase##AK056516|PASK|23178|PAS domain containing serine/threonine kinase##AK302417|PASK|23178|PAS domain containing serine/threonine kinase##BC050565|PASK|23178|PAS domain containing serine/threonine kinase##AK302561|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252119|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252122|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252124|PASK|23178|PAS domain containing serine/threonine kinase##NM_015148|PASK|23178|PAS domain containing serine/threonine kinase##AK308015|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC051689|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7	0.995018	0.0	denovo_WM_7:-26:0.857
chr2	12757613	12757750	reg1005801.p1	6.631	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-870906	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-947390	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-1074838	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	99572	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	100235	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	100716	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.99937	0.0	denovo_WM_7:-15:0.739
chr6	16655131	16655234	reg1005100.p1	6.631	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-416331	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-511872	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-525745	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	106515	-	NM_001190766	447306	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	626672	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.714142	0.0	denovo_WM_7:-21:0.701
chr3	27526346	27526499	reg1004152.p1	6.630	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-492	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-597	-	AF047033 AF089726 NM_003615	-28178	-	AB031038 BC131712 NM_005442 AB463608 BC037568	237371	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	237779	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	756676	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	0.374085	0.0	
chr2	219221368	219221490	reg1005293.p1	6.629	+	TSC_hg19_v1_chr2_+_219188021 AY358753 CU678300 AM393075 AM393168 BC002937 AK309308	-33392	+	TSC_hg19_v1_chr2_+_219187970 NM_022572	-33514	+	TSC_hg19_v1_chr2_-_219157237 AF193045 BC007980 AK095270 AK300597 AK298123 BC026348 AK130713 AK298500 BC026693 AK130380 BC013428 NM_022152	-64174	-	BC052750 NM_198559 CU690932	162	+	AK307954 NM_000578 TSC_hg19_v1_chr2_+_219246995 D50402 AB209650 AK303398 AK310914 AK298667 AK311405 D50403 AK294707 BC041787 L32185 BC071165 BC033754	25480	+	NM_001206878	41631	+	AY358753|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393075|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393168|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC002937|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK309308|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_022572|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AF193045|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC007980|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK300597|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK298123|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC026348|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK130713|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK298500|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC026693|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK130380|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC013428|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##NM_022152|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC052750|C2orf62|375307|chromosome 2 open reading frame 62##NM_198559|C2orf62|375307|chromosome 2 open reading frame 62##AK307954|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_000578|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50402|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AB209650|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK303398|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK310914|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK298667|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK311405|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50403|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK294707|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC041787|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##L32185|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC071165|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC033754|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_001206878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	0.80884	0.444128	CTCF.p2:12:0.444	denovo_WM_7:-13:0.557
chr3	61876015	61876160	reg1005416.p1	6.629	+	AB055764 TSC_hg19_v1_chr3_-_61728812	-147276	-	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-328111	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-328801	+	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	428619	+	BC017772 NM_020685	429308	+	AK290464 NM_018008	483102	-	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14##AK290464|FEZF2|55079|FEZ family zinc finger 2##NM_018008|FEZF2|55079|FEZ family zinc finger 2	1.956919	0.0	denovo_WM_7:1:0.548	denovo_WM_7:2:0.416	denovo_WM_7:18:0.836
chr4	112190119	112190249	reg1004725.p1	6.629	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-626906	-	BC106010 TSC_hg19_v1_chr4_-_111558185 AK291591 AF048720 AF048721	-632015	-	BC007987 AF048722 TSC_hg19_v1_chr4_-_111544234 BC013998 NM_000325	-645909	-	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	876430	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	962900	+	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	1016817	-	NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC106010|PITX2|5308|paired-like homeodomain 2##AK291591|PITX2|5308|paired-like homeodomain 2##AF048720|PITX2|5308|paired-like homeodomain 2##AF048721|PITX2|5308|paired-like homeodomain 2##AF048722|PITX2|5308|paired-like homeodomain 2##BC013998|PITX2|5308|paired-like homeodomain 2##NM_000325|PITX2|5308|paired-like homeodomain 2##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain	0.994944	0.0	denovo_WM_7:8:0.332	denovo_WM_7:9:0.332	denovo_WM_7:10:0.332
chr5	34919333	34919485	reg1005723.p1	6.628	+	AK303311 TSC_hg19_v1_chr5_+_34915820 AK001962 BC006014 BC001546 NM_018321 AK289610 BX648902 DQ892108 DQ895302 AF347667 AY364243 AY364244	-3597	+	TSC_hg19_v1_chr5_-_34915716 AK002112 NM_002853	-3663	-	AF074717 TSC_hg19_v1_chr5_-_34915671 BC009804 AJ004974 AJ004975 BC006837 AF073524 AF076841 AF090170 AF084512 AF084513 AF011905	-3779	-	TSC_hg19_v1_chr5_+_34929697 AY177688 AY258422 BC065745 NM_001012339 NM_194283	10283	+	NM_031900	128830	-	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	198814	-	AK303311|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AK001962|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##BC006014|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##BC001546|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##NM_018321|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AK289610|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##BX648902|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##DQ892108|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##DQ895302|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AF347667|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AY364243|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AY364244|BRIX1|55299|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)##AK002112|RAD1|5810|RAD1 homolog (S. pombe)##NM_002853|RAD1|5810|RAD1 homolog (S. pombe)##AF074717|RAD1|5810|RAD1 homolog (S. pombe)##BC009804|RAD1|5810|RAD1 homolog (S. pombe)##AJ004974|RAD1|5810|RAD1 homolog (S. pombe)##AJ004975|RAD1|5810|RAD1 homolog (S. pombe)##BC006837|RAD1|5810|RAD1 homolog (S. pombe)##AF073524|RAD1|5810|RAD1 homolog (S. pombe)##AF076841|RAD1|5810|RAD1 homolog (S. pombe)##AF090170|RAD1|5810|RAD1 homolog (S. pombe)##AF084512|RAD1|5810|RAD1 homolog (S. pombe)##AF084513|RAD1|5810|RAD1 homolog (S. pombe)##AF011905|RAD1|5810|RAD1 homolog (S. pombe)##AY177688|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##AY258422|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##BC065745|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_001012339|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_194283|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_031900|AGXT2|64902|alanine--glyoxylate aminotransferase 2##NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor	1.943425	0.0	
chr1	155828847	155829027	reg1000490.p3	6.627	+	TSC_hg19_v1_chr1_-_155827021 AB195687 AB195688	-1885	-	TSC_hg19_v1_chr1_-_155827003 AB232668 AY335492 BC114629 BC115703 BX537764 NM_001037533 NM_032292 AY335490 BX648043 AK098734 BX648802	-1961	-	TSC_hg19_v1_chr1_-_155774769 AK315191 BC071650	-54146	-	NM_152280 TSC_hg19_v1_chr1_+_155829357 BC039205 BC013690 D38522 AK296378 CR749792 AK027540 AK074931 BC004291 CU691678	468	+	TSC_hg19_v1_chr1_+_155853548 AK026178	24636	+	BC104186 BC104187 AF084462 U71203 U78165 Y07566 TSC_hg19_v1_chr1_-_155881141	52167	-	AB195687|GON4L|54856|gon-4-like (C. elegans)##AB195688|GON4L|54856|gon-4-like (C. elegans)##AB232668|GON4L|54856|gon-4-like (C. elegans)##AY335492|GON4L|54856|gon-4-like (C. elegans)##BC114629|GON4L|54856|gon-4-like (C. elegans)##BC115703|GON4L|54856|gon-4-like (C. elegans)##BX537764|GON4L|54856|gon-4-like (C. elegans)##NM_001037533|GON4L|54856|gon-4-like (C. elegans)##NM_032292|GON4L|54856|gon-4-like (C. elegans)##AY335490|GON4L|54856|gon-4-like (C. elegans)##BX648043|GON4L|54856|gon-4-like (C. elegans)##AK098734|GON4L|54856|gon-4-like (C. elegans)##BX648802|GON4L|54856|gon-4-like (C. elegans)##AK315191|GON4L|54856|gon-4-like (C. elegans)##BC071650|GON4L|54856|gon-4-like (C. elegans)##NM_152280|SYT11|23208|synaptotagmin XI##BC039205|SYT11|23208|synaptotagmin XI##BC013690|SYT11|23208|synaptotagmin XI##D38522|SYT11|23208|synaptotagmin XI##AK296378|SYT11|23208|synaptotagmin XI##CR749792|SYT11|23208|synaptotagmin XI##AK027540|SYT11|23208|synaptotagmin XI##AK074931|SYT11|23208|synaptotagmin XI##BC004291|SYT11|23208|synaptotagmin XI##AK026178|SYT11|23208|synaptotagmin XI##BC104186|RIT1|6016|Ras-like without CAAX 1##BC104187|RIT1|6016|Ras-like without CAAX 1##AF084462|RIT1|6016|Ras-like without CAAX 1##U71203|RIT1|6016|Ras-like without CAAX 1##U78165|RIT1|6016|Ras-like without CAAX 1##Y07566|RIT1|6016|Ras-like without CAAX 1	0.058697	0.0	
chr6	124086314	124086435	reg1004406.p1	6.627	+	U18985 BC139910 AK291867 BC012590 BC029393 BC057222 BC070290 AJ489257 AK307619 NM_001251987 NM_006073	-128285	-	BC101377 BC101376 NM_001010852	-768794	+	TSC_hg19_v1_chr6_+_123317379 AK295158	-768991	+	NM_001040214 NM_153355 TSC_hg19_v1_chr6_+_124125147 AB070452 BC035062 AK310763 AK309385	38830	+	AK093417 AX748113 BC026087 NM_152553	1218137	+	TSC_hg19_v1_chr6_+_125474909 NM_001003396 NM_001003397 NM_003287 AK291866 U44427 BC002375 AK291872 AF208012 AK291887	1388565	+	U18985|TRDN|10345|triadin##BC139910|TRDN|10345|triadin##AK291867|TRDN|10345|triadin##BC012590|TRDN|10345|triadin##BC029393|TRDN|10345|triadin##BC057222|TRDN|10345|triadin##BC070290|TRDN|10345|triadin##AJ489257|TRDN|10345|triadin##AK307619|TRDN|10345|triadin##NM_001251987|TRDN|10345|triadin##NM_006073|TRDN|10345|triadin##BC101377|CLVS2|134829|clavesin 2##BC101376|CLVS2|134829|clavesin 2##NM_001010852|CLVS2|134829|clavesin 2##AK295158|CLVS2|134829|clavesin 2##NM_001040214|NKAIN2|154215|Na+/K+ transporting ATPase interacting 2##NM_153355|NKAIN2|154215|Na+/K+ transporting ATPase interacting 2##AB070452|NKAIN2|154215|Na+/K+ transporting ATPase interacting 2##BC035062|NKAIN2|154215|Na+/K+ transporting ATPase interacting 2##AK310763|NKAIN2|154215|Na+/K+ transporting ATPase interacting 2##AK309385|NKAIN2|154215|Na+/K+ transporting ATPase interacting 2##AK093417|RNF217|154214|ring finger protein 217##BC026087|RNF217|154214|ring finger protein 217##NM_152553|RNF217|154214|ring finger protein 217##NM_001003396|TPD52L1|7164|tumor protein D52-like 1##NM_001003397|TPD52L1|7164|tumor protein D52-like 1##NM_003287|TPD52L1|7164|tumor protein D52-like 1##AK291866|TPD52L1|7164|tumor protein D52-like 1##U44427|TPD52L1|7164|tumor protein D52-like 1##BC002375|TPD52L1|7164|tumor protein D52-like 1##AK291872|TPD52L1|7164|tumor protein D52-like 1##AF208012|TPD52L1|7164|tumor protein D52-like 1##AK291887|TPD52L1|7164|tumor protein D52-like 1	1.987604	0.0	denovo_WM_7:-2:0.221	denovo_WM_7:-4:0.459	denovo_WM_7:-5:0.247
chr2	10818477	10818604	reg1006624.p1	6.626	+	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	-230088	-	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	-230180	-	AK000596 NM_134421	-374715	+	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	11504	-	TSC_hg19_v1_chr2_-_10830102 NM_024894	11579	-	TSC_hg19_v1_chr2_+_10861755 NM_001039362 NM_144583 AK292952	43235	+	AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10##NM_024894|NOL10|79954|nucleolar protein 10##NM_001039362|ATP6V1C2|245973|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2##NM_144583|ATP6V1C2|245973|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2##AK292952|ATP6V1C2|245973|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2	0.999623	0.019298	denovo_WM_7:15:0.838
chr8	91638720	91638865	reg1006332.p1	6.626	+	AB529128 X06661 BC006478 AK054881 AK312491 BC020864 NM_004929	-543777	-	NM_001359 BC105080 BC105082 BC143669 TSC_hg19_v1_chr8_+_91013704 AK300069 L26050	-625143	+	TSC_hg19_v1_chr8_-_90996896 AK001017 AK289848 BC071590 BC040519 BX640816 NM_002485 AK312410	-641888	-	AK300583 AK123958 AL834364 TSC_hg19_v1_chr8_-_91657856	19006	-	TSC_hg19_v1_chr8_-_91657970 AY147881 NM_001008495 NM_001146273	19223	-	AF414126 TSC_hg19_v1_chr8_+_91803956 NM_022351 AK095533 BC068448 AY224210	165153	+	X06661|CALB1|793|calbindin 1, 28kDa##BC006478|CALB1|793|calbindin 1, 28kDa##AK054881|CALB1|793|calbindin 1, 28kDa##AK312491|CALB1|793|calbindin 1, 28kDa##BC020864|CALB1|793|calbindin 1, 28kDa##NM_004929|CALB1|793|calbindin 1, 28kDa##NM_001359|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105080|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105082|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC143669|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK300069|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##L26050|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK001017|NBN|4683|nibrin##AK289848|NBN|4683|nibrin##BC071590|NBN|4683|nibrin##BC040519|NBN|4683|nibrin##BX640816|NBN|4683|nibrin##NM_002485|NBN|4683|nibrin##AK312410|NBN|4683|nibrin##AK300583|TMEM64|169200|transmembrane protein 64##AK123958|TMEM64|169200|transmembrane protein 64##AL834364|TMEM64|169200|transmembrane protein 64##AY147881|TMEM64|169200|transmembrane protein 64##NM_001008495|TMEM64|169200|transmembrane protein 64##NM_001146273|TMEM64|169200|transmembrane protein 64##AF414126|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##NM_022351|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AK095533|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##BC068448|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AY224210|NECAB1|64168|N-terminal EF-hand calcium binding protein 1	1.957901	0.0	denovo_WM_7:58:0.668	denovo_WM_7:75:0.222	denovo_WM_7:76:0.228	denovo_WM_7:77:0.249
chr14	91502248	91502389	reg1005542.p2	6.625	+	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-219553	-	AB527232 TSC_hg19_v1_chr14_-_91282750	-219620	-	TSC_hg19_v1_chr14_+_90863372 BC011834 BC047523 U16851 BC000454 BC008597 AK289937 M27319	-638891	+	TSC_hg19_v1_chr14_-_91526731 CU677851	24436	-	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	24652	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	78087	+	NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##BC011834|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC047523|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##U16851|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC000454|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008597|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AK289937|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##M27319|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159	2.878805	0.0	denovo_WM_7:-12:0.291	denovo_WM_7:-13:0.634	denovo_WM_7:45:0.766	denovo_WM_7:-100:0.331	denovo_WM_7:-101:0.265
chr6	34187753	34187852	reg1005400.p1	6.625	+	AB385221 EU432124 HQ258665 HQ258669 U92457 BC130526 BC130528 BC144057 NM_000841 X80818 AK308669	-86400	-	BC112314 BC143981 Y00695 BC069675 NM_001040109 NM_001184698 NM_002418	-416028	-	BC039864 NM_181336 TSC_hg19_v1_chr6_-_33756906	-430892	-	NM_002131 NM_145899 NM_145903 TSC_hg19_v1_chr6_+_34204617	16809	+	TSC_hg19_v1_chr6_+_34204649 AK096863 M23616 M23617 NM_145901 NM_145902 AK301434	16848	+	TSC_hg19_v1_chr6_+_34204678 X14957 X14958 AK308245	16869	+	EU432124|GRM4|2914|glutamate receptor, metabotropic 4##HQ258665|GRM4|2914|glutamate receptor, metabotropic 4##HQ258669|GRM4|2914|glutamate receptor, metabotropic 4##U92457|GRM4|2914|glutamate receptor, metabotropic 4##BC130526|GRM4|2914|glutamate receptor, metabotropic 4##BC130528|GRM4|2914|glutamate receptor, metabotropic 4##BC144057|GRM4|2914|glutamate receptor, metabotropic 4##NM_000841|GRM4|2914|glutamate receptor, metabotropic 4##X80818|GRM4|2914|glutamate receptor, metabotropic 4##BC112314|MLN|4295|motilin##BC143981|MLN|4295|motilin##Y00695|MLN|4295|motilin##BC069675|MLN|4295|motilin##NM_001040109|MLN|4295|motilin##NM_001184698|MLN|4295|motilin##NM_002418|MLN|4295|motilin##BC039864|LEMD2|221496|LEM domain containing 2##NM_181336|LEMD2|221496|LEM domain containing 2##NM_002131|HMGA1|3159|high mobility group AT-hook 1##NM_145899|HMGA1|3159|high mobility group AT-hook 1##NM_145903|HMGA1|3159|high mobility group AT-hook 1##AK096863|HMGA1|3159|high mobility group AT-hook 1##M23616|HMGA1|3159|high mobility group AT-hook 1##M23617|HMGA1|3159|high mobility group AT-hook 1##NM_145901|HMGA1|3159|high mobility group AT-hook 1##NM_145902|HMGA1|3159|high mobility group AT-hook 1##AK301434|HMGA1|3159|high mobility group AT-hook 1##X14957|HMGA1|3159|high mobility group AT-hook 1##X14958|HMGA1|3159|high mobility group AT-hook 1##AK308245|HMGA1|3159|high mobility group AT-hook 1	1.983638	0.0	denovo_WM_7:-10:0.297	denovo_WM_7:-11:0.614	denovo_WM_7:-26:0.715
chr7	75370170	75370271	reg1004086.p2	6.624	+	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	-1910	-	AF365404 AB385224 TSC_hg19_v1_chr7_-_75368255 AK094866 AK304738 BC110545	-1980	-	BC101598 BC143635 BC087844 BC022886 BC007683 BC014421 BC029646 TSC_hg19_v1_chr7_-_75157432 BC046153	-213035	-	NM_006072 AY358893	48918	-	AJ223461 BC069072 BC069391 NM_002991 U85768 AB590965 CU686790	72809	-	AF226732 TSC_hg19_v1_chr7_+_75508369 NM_001040456 NM_001040457 BC069017 AK026590	138114	+	AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##AF365404|HIP1|3092|huntingtin interacting protein 1##AK094866|HIP1|3092|huntingtin interacting protein 1##AK304738|HIP1|3092|huntingtin interacting protein 1##BC110545|HIP1|3092|huntingtin interacting protein 1##BC101598|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC143635|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC087844|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC007683|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC014421|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC046153|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26##AJ223461|CCL24|6369|chemokine (C-C motif) ligand 24##BC069072|CCL24|6369|chemokine (C-C motif) ligand 24##BC069391|CCL24|6369|chemokine (C-C motif) ligand 24##NM_002991|CCL24|6369|chemokine (C-C motif) ligand 24##U85768|CCL24|6369|chemokine (C-C motif) ligand 24##AF226732|RHBDD2|57414|rhomboid domain containing 2##NM_001040456|RHBDD2|57414|rhomboid domain containing 2##NM_001040457|RHBDD2|57414|rhomboid domain containing 2##BC069017|RHBDD2|57414|rhomboid domain containing 2##AK026590|RHBDD2|57414|rhomboid domain containing 2	1.957176	0.0	denovo_WM_7:-52:0.526	denovo_WM_7:-53:0.423
chr21	34756136	34756316	reg1003228.p1	6.623	+	AK222770 AK222812 AK312631 TSC_hg19_v1_chr21_+_34697277 BC021825 J03171 BC002590 AB528746 CU692410 DQ891323 DQ894507	-58908	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	-59008	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	-117472	+	TSC_hg19_v1_chr21_+_34775192 NM_005534 U05875	18970	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	19506	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	19522	+	AK222770|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK222812|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK312631|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC021825|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##J03171|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC002590|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ891323|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ894507|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_005534|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05875|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)	0.99487	0.0	denovo_WM_7:1:0.688
chr6	106968754	106968881	reg1004348.p1	6.623	+	TSC_hg19_v1_chr6_+_106960443 U83115	-8406	+	AK056705 NM_001624	-9088	+	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	-195154	-	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	108463	-	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	108680	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	380655	+	U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203	0.0	0.0	
chr8	28904983	28905114	reg1006426.p1	6.623	+	TSC_hg19_v1_chr8_+_28748135 AY522342 DQ269478 BC069242 NM_024567	-156921	+	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	-157131	+	NM_001145159 NM_018250	-157351	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	215566	-	AL137704 NM_057158	301273	-	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	303022	-	AY522342|HMBOX1|79618|homeobox containing 1##DQ269478|HMBOX1|79618|homeobox containing 1##BC069242|HMBOX1|79618|homeobox containing 1##NM_024567|HMBOX1|79618|homeobox containing 1##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4	0.993686	0.0	
chr17	9945592	9945738	reg1006438.p2	6.622	+	TSC_hg19_v1_chr17_-_9940004 AK057761 BC006454 NM_201432	-5632	-	TSC_hg19_v1_chr17_-_9939883 AK292987	-5787	-	TSC_hg19_v1_chr17_-_9929603 AB007854 AK225165 AK299574 NM_001130831	-16044	-	TSC_hg19_v1_chr17_-_10101924 AY327406 NM_201433	156241	-	AF111782 NM_003802	330656	-	AK303395 NM_002472	379601	-	AK057761|GAS7|8522|growth arrest-specific 7##BC006454|GAS7|8522|growth arrest-specific 7##NM_201432|GAS7|8522|growth arrest-specific 7##AK292987|GAS7|8522|growth arrest-specific 7##AB007854|GAS7|8522|growth arrest-specific 7##AK225165|GAS7|8522|growth arrest-specific 7##AK299574|GAS7|8522|growth arrest-specific 7##NM_001130831|GAS7|8522|growth arrest-specific 7##AY327406|GAS7|8522|growth arrest-specific 7##NM_201433|GAS7|8522|growth arrest-specific 7##AF111782|MYH13|8735|myosin, heavy chain 13, skeletal muscle##NM_003802|MYH13|8735|myosin, heavy chain 13, skeletal muscle##AK303395|MYH8|4626|myosin, heavy chain 8, skeletal muscle, perinatal##NM_002472|MYH8|4626|myosin, heavy chain 8, skeletal muscle, perinatal	0.99549	0.0	
chr19	1038521	1038646	reg1004261.p3	6.622	+	AK024835 AK057960 AK293171 TSC_hg19_v1_chr19_+_1026627 BC141818 BC141833 D83735 AK222924 AK300788 D86059 BC148264 CR541810 CR541831 AY927510 AY927514	-11921	+	TSC_hg19_v1_chr19_+_1026625 AK297774	-11959	+	TSC_hg19_v1_chr19_+_1026609 AK126391	-11973	+	TSC_hg19_v1_chr19_+_1040105 NM_019112	1509	+	AK310127 TSC_hg19_v1_chr19_+_1040114 AK301108 AK310909	1551	+	TSC_hg19_v1_chr19_+_1067170 BC065223 NM_012292	28560	+	AK024835|CNN2|1265|calponin 2##AK057960|CNN2|1265|calponin 2##AK293171|CNN2|1265|calponin 2##BC141818|CNN2|1265|calponin 2##BC141833|CNN2|1265|calponin 2##D83735|CNN2|1265|calponin 2##AK222924|CNN2|1265|calponin 2##AK300788|CNN2|1265|calponin 2##D86059|CNN2|1265|calponin 2##BC148264|CNN2|1265|calponin 2##CR541810|CNN2|1265|calponin 2##CR541831|CNN2|1265|calponin 2##AY927514|CNN2|1265|calponin 2##AK297774|CNN2|1265|calponin 2##AK126391|CNN2|1265|calponin 2##NM_019112|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310127|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK301108|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310909|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##BC065223|HMHA1|23526|histocompatibility (minor) HA-1##NM_012292|HMHA1|23526|histocompatibility (minor) HA-1	0.0	0.032785	
chr3	36940301	36940481	reg1006151.p1	6.622	+	NM_033403	-159040	-	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	-518339	+	BC017805 NM_198399 BC066651 BC036548	-1217932	+	TSC_hg19_v1_chr3_-_36986546 NM_014831	46179	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	94180	-	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	94310	-	NM_033403|DCLK3|85443|doublecortin-like kinase 3##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1	0.9938	0.0	denovo_WM_7:-39:0.248	denovo_WM_7:-40:0.248	denovo_WM_7:-41:0.248	denovo_WM_7:-42:0.248
chr2	54569768	54569834	reg1019176.p1	6.621	+	AK097617 NM_001100396 BC126244 BC126246 BC144191 BC144192 BC031669	-11713	+	BC068576 AK097417 NM_001003937	-86426	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	-227207	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	113811	+	TSC_hg19_v1_chr2_+_54684338 BC032061	114566	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	215764	+	AK097617|C2orf73|129852|chromosome 2 open reading frame 73##NM_001100396|C2orf73|129852|chromosome 2 open reading frame 73##BC126244|C2orf73|129852|chromosome 2 open reading frame 73##BC126246|C2orf73|129852|chromosome 2 open reading frame 73##BC144191|C2orf73|129852|chromosome 2 open reading frame 73##BC144192|C2orf73|129852|chromosome 2 open reading frame 73##BC031669|C2orf73|129852|chromosome 2 open reading frame 73##BC068576|TSPYL6|388951|TSPY-like 6##AK097417|TSPYL6|388951|TSPY-like 6##NM_001003937|TSPYL6|388951|TSPY-like 6##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1	0.997829	0.0	denovo_WM_7:-43:0.998
chr1	206888085	206888230	reg1007228.p1	6.620	+	TSC_hg19_v1_chr1_+_206858308 BC036060 NM_004759 NM_032960 BC052584 AB590627 X75346	-29686	+	AB529015 BC037269 AF327561 TSC_hg19_v1_chr1_+_206809124 AF186774	-79047	+	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	-79313	+	AF043333 AY029171 CR541993 CR542028 AB587432 M57627 BC104252 BC104253 BC022315 NM_000572 EU751618 EU751619	57722	-	AY040367 NM_153758 AB463800	84069	+	AF453946 NM_013371	114064	+	BC036060|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_004759|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_032960|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC052584|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##X75346|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC037269|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF327561|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186774|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF043333|IL10|3586|interleukin 10##AY029171|IL10|3586|interleukin 10##CR541993|IL10|3586|interleukin 10##CR542028|IL10|3586|interleukin 10##M57627|IL10|3586|interleukin 10##BC104252|IL10|3586|interleukin 10##BC104253|IL10|3586|interleukin 10##BC022315|IL10|3586|interleukin 10##NM_000572|IL10|3586|interleukin 10##AY040367|IL19|29949|interleukin 19##NM_153758|IL19|29949|interleukin 19##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19	0.997802	0.0	denovo_WM_7:-37:0.310	denovo_WM_7:-38:0.310	denovo_WM_7:-39:0.310
chr12	123360320	123360500	reg1005724.p1	6.619	+	TSC_hg19_v1_chr12_+_123320050 AK298387 BC067085 NM_003959 AB014555	-40357	+	TSC_hg19_v1_chr12_+_123319294 AK090537	-41108	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	-101309	+	CU675175 TSC_hg19_v1_chr12_-_123380621	20205	-	TSC_hg19_v1_chr12_-_123380645 BC005882	20229	-	TSC_hg19_v1_chr12_-_123380691 AK022812 NM_024667	20286	-	AK298387|HIP1R|9026|huntingtin interacting protein 1 related##BC067085|HIP1R|9026|huntingtin interacting protein 1 related##NM_003959|HIP1R|9026|huntingtin interacting protein 1 related##AB014555|HIP1R|9026|huntingtin interacting protein 1 related##AK090537|HIP1R|9026|huntingtin interacting protein 1 related##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62##BC005882|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##AK022812|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##NM_024667|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)	0.996917	0.0	
chr16	12104708	12104888	reg1006088.p2	6.619	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-34225	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-45714	+	NM_001130007	-94280	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	792853	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	792921	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	890670	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	0.773909	0.0	denovo_WM_7:-12:0.719
chr10	35630629	35630801	reg1006126.p1	6.618	+	TSC_hg19_v1_chr10_+_35625609 AF413522 AY504868 NM_145012 AK303283 AL834355 BC094815 BC069224 BC050310 AF465728 AF465729 AB462996 AM392857	-4921	+	TSC_hg19_v1_chr10_+_35625400 AK314666	-5259	+	AF429969 AK057280 NM_181698	-94763	+	AK074504 NM_153368	263622	+	AB587328 AB043703 NM_031866	299644	-	AF269087 NM_052997	1784069	+	AF413522|CCNY|219771|cyclin Y##AY504868|CCNY|219771|cyclin Y##NM_145012|CCNY|219771|cyclin Y##AK303283|CCNY|219771|cyclin Y##AL834355|CCNY|219771|cyclin Y##BC094815|CCNY|219771|cyclin Y##BC069224|CCNY|219771|cyclin Y##BC050310|CCNY|219771|cyclin Y##AF465728|CCNY|219771|cyclin Y##AF465729|CCNY|219771|cyclin Y##AK314666|CCNY|219771|cyclin Y##AF429969|CCNY|219771|cyclin Y##AK057280|CCNY|219771|cyclin Y##NM_181698|CCNY|219771|cyclin Y##AK074504|GJD4|219770|gap junction protein, delta 4, 40.1kDa##NM_153368|GJD4|219770|gap junction protein, delta 4, 40.1kDa##AB043703|FZD8|8325|frizzled family receptor 8##NM_031866|FZD8|8325|frizzled family receptor 8##AF269087|ANKRD30A|91074|ankyrin repeat domain 30A##NM_052997|ANKRD30A|91074|ankyrin repeat domain 30A	0.810234	0.0	denovo_WM_7:26:0.774
chr4	76523690	76523810	reg1006165.p2	6.618	+	AK074237 AK172776 BC117342 BC144003 BC144005 NM_001206981 NM_178497 AK300227 BC061701 HQ258050	-42477	+	NM_144721 TSC_hg19_v1_chr4_+_76439670 AK310575 AK056959 AK303658 AK308914 AK309187 AL833350 BX647579 AK313765	-84059	+	TSC_hg19_v1_chr4_-_76439614 AK091501 AX747022 BC031057 BC047393 NM_001008925 NM_001009922 NM_015436	-84136	-	U35146 BC017417 AK294866 AK312490 NM_003948	31895	-	TSC_hg19_v1_chr4_-_76598333 AB014560 AK291786 NM_012297	74566	-	AF053535 AF145284 TSC_hg19_v1_chr4_-_76598560	74810	-	AK074237|C4orf26|152816|chromosome 4 open reading frame 26##AK172776|C4orf26|152816|chromosome 4 open reading frame 26##BC117342|C4orf26|152816|chromosome 4 open reading frame 26##BC144003|C4orf26|152816|chromosome 4 open reading frame 26##BC144005|C4orf26|152816|chromosome 4 open reading frame 26##NM_001206981|C4orf26|152816|chromosome 4 open reading frame 26##NM_178497|C4orf26|152816|chromosome 4 open reading frame 26##AK300227|C4orf26|152816|chromosome 4 open reading frame 26##BC061701|C4orf26|152816|chromosome 4 open reading frame 26##HQ258050|C4orf26|152816|chromosome 4 open reading frame 26##NM_144721|THAP6|152815|THAP domain containing 6##AK310575|THAP6|152815|THAP domain containing 6##AK056959|THAP6|152815|THAP domain containing 6##AK303658|THAP6|152815|THAP domain containing 6##AK308914|THAP6|152815|THAP domain containing 6##AK309187|THAP6|152815|THAP domain containing 6##AL833350|THAP6|152815|THAP domain containing 6##BX647579|THAP6|152815|THAP domain containing 6##AK313765|THAP6|152815|THAP domain containing 6##AK091501|RCHY1|25898|ring finger and CHY zinc finger domain containing 1##BC031057|RCHY1|25898|ring finger and CHY zinc finger domain containing 1##BC047393|RCHY1|25898|ring finger and CHY zinc finger domain containing 1##NM_001008925|RCHY1|25898|ring finger and CHY zinc finger domain containing 1##NM_001009922|RCHY1|25898|ring finger and CHY zinc finger domain containing 1##NM_015436|RCHY1|25898|ring finger and CHY zinc finger domain containing 1##U35146|CDKL2|8999|cyclin-dependent kinase-like 2 (CDC2-related kinase)##BC017417|CDKL2|8999|cyclin-dependent kinase-like 2 (CDC2-related kinase)##AK294866|CDKL2|8999|cyclin-dependent kinase-like 2 (CDC2-related kinase)##AK312490|CDKL2|8999|cyclin-dependent kinase-like 2 (CDC2-related kinase)##NM_003948|CDKL2|8999|cyclin-dependent kinase-like 2 (CDC2-related kinase)##AB014560|G3BP2|9908|GTPase activating protein (SH3 domain) binding protein 2##AK291786|G3BP2|9908|GTPase activating protein (SH3 domain) binding protein 2##NM_012297|G3BP2|9908|GTPase activating protein (SH3 domain) binding protein 2##AF053535|G3BP2|9908|GTPase activating protein (SH3 domain) binding protein 2##AF145284|G3BP2|9908|GTPase activating protein (SH3 domain) binding protein 2	1.058839	0.0	denovo_WM_7:33:0.896
chr5	14252025	14252182	reg1005999.p1	6.618	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-108431	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-240233	-	AX800026 AY045575 NM_001369	-307515	-	TSC_hg19_v1_chr5_+_14488527 AK131423	236436	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	329797	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	329861	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	0.999661	0.0	denovo_WM_7:-15:0.425	denovo_WM_7:-16:0.425
chr11	65129896	65130074	reg1000775.p1	6.617	+	NM_145719	-7704	+	TSC_hg19_v1_chr11_+_65101347 BC014889 AK291944 U94585 AB463002 BT006718 DQ892397 DQ895612	-28634	+	NM_006268 TSC_hg19_v1_chr11_+_65101322 AK313408 AK300061 BX641135	-28701	+	BC036869 BX648573 NM_001077241 NM_182556	20139	-	NM_031904 TSC_hg19_v1_chr11_+_65154083 BC021094	24079	+	TSC_hg19_v1_chr11_+_65154127 AK074850 BC033851 AK056778 BC044658 AK291678 AK304363 BC051695	24126	+	NM_145719|TIGD3|220359|tigger transposable element derived 3##BC014889|DPF2|5977|D4, zinc and double PHD fingers family 2##AK291944|DPF2|5977|D4, zinc and double PHD fingers family 2##U94585|DPF2|5977|D4, zinc and double PHD fingers family 2##BT006718|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ892397|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ895612|DPF2|5977|D4, zinc and double PHD fingers family 2##NM_006268|DPF2|5977|D4, zinc and double PHD fingers family 2##AK313408|DPF2|5977|D4, zinc and double PHD fingers family 2##AK300061|DPF2|5977|D4, zinc and double PHD fingers family 2##BX641135|DPF2|5977|D4, zinc and double PHD fingers family 2##BC036869|SLC25A45|283130|solute carrier family 25, member 45##BX648573|SLC25A45|283130|solute carrier family 25, member 45##NM_001077241|SLC25A45|283130|solute carrier family 25, member 45##NM_182556|SLC25A45|283130|solute carrier family 25, member 45##NM_031904|FRMD8|83786|FERM domain containing 8##AK074850|FRMD8|83786|FERM domain containing 8##BC033851|FRMD8|83786|FERM domain containing 8##AK056778|FRMD8|83786|FERM domain containing 8##BC044658|FRMD8|83786|FERM domain containing 8##AK291678|FRMD8|83786|FERM domain containing 8##AK304363|FRMD8|83786|FERM domain containing 8##BC051695|FRMD8|83786|FERM domain containing 8	0.0	0.0	
chr12	8113382	8113494	reg1003712.p1	6.616	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-24672	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-69670	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-87972	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	72052	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	105515	-	TSC_hg19_v1_chr12_-_8219032 U62027	105578	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.0	0.0	
chr20	58524090	58524270	reg1001036.p1	6.616	+	TSC_hg19_v1_chr20_+_58515434 AK304220 NM_001190827 NM_022106 BC020771 BC054002	-8692	+	TSC_hg19_v1_chr20_-_58515355 BC047502 NM_006242	-8856	-	AK125073 NM_001190826	-15362	+	NM_177980 AK055202	9295	+	BC062570 NM_021810 AK074477	47242	+	TSC_hg19_v1_chr20_+_58630979 AK091179 AX746831 NM_173644	106815	+	AK304220|C20orf177|63939|chromosome 20 open reading frame 177##NM_001190827|C20orf177|63939|chromosome 20 open reading frame 177##NM_022106|C20orf177|63939|chromosome 20 open reading frame 177##BC020771|C20orf177|63939|chromosome 20 open reading frame 177##BC054002|C20orf177|63939|chromosome 20 open reading frame 177##BC047502|PPP1R3D|5509|protein phosphatase 1, regulatory subunit 3D##NM_006242|PPP1R3D|5509|protein phosphatase 1, regulatory subunit 3D##AK125073|C20orf177|63939|chromosome 20 open reading frame 177##NM_001190826|C20orf177|63939|chromosome 20 open reading frame 177##NM_177980|CDH26|60437|cadherin 26##AK055202|CDH26|60437|cadherin 26##BC062570|CDH26|60437|cadherin 26##NM_021810|CDH26|60437|cadherin 26##AK074477|CDH26|60437|cadherin 26##AK091179|C20orf197|284756|chromosome 20 open reading frame 197##NM_173644|C20orf197|284756|chromosome 20 open reading frame 197	0.0	0.0	
chr9	106590973	106591121	reg1007930.p1	6.616	+	BC058038 NM_001340 AK313349 BC114547 Z46788	-833420	+	AB075853 BC167432 NM_133445 TSC_hg19_v1_chr9_-_104500930	-2090146	-	TSC_hg19_v1_chr9_-_104500218 AB385519 AF416558 AJ416950	-2090802	-	TSC_hg19_v1_chr9_+_106856601 AL833191 NM_001042551 NM_006444 BC055081 BC061906 AK307752 AK292599 BC017845 AF092563	265524	+	TSC_hg19_v1_chr9_+_106856625 AY739716 BC130385 BC144163	265606	+	TSC_hg19_v1_chr9_+_106856844 BC071750 NM_001042550 AK001485 BC032705 BC107891	265825	+	BC058038|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##NM_001340|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##AK313349|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##BC114547|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##Z46788|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##AB075853|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##BC167432|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##NM_133445|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##AF416558|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##AJ416950|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##AL833191|SMC2|10592|structural maintenance of chromosomes 2##NM_001042551|SMC2|10592|structural maintenance of chromosomes 2##NM_006444|SMC2|10592|structural maintenance of chromosomes 2##BC055081|SMC2|10592|structural maintenance of chromosomes 2##BC061906|SMC2|10592|structural maintenance of chromosomes 2##AK307752|SMC2|10592|structural maintenance of chromosomes 2##AK292599|SMC2|10592|structural maintenance of chromosomes 2##BC017845|SMC2|10592|structural maintenance of chromosomes 2##AF092563|SMC2|10592|structural maintenance of chromosomes 2##AY739716|SMC2|10592|structural maintenance of chromosomes 2##BC130385|SMC2|10592|structural maintenance of chromosomes 2##BC144163|SMC2|10592|structural maintenance of chromosomes 2##BC071750|SMC2|10592|structural maintenance of chromosomes 2##NM_001042550|SMC2|10592|structural maintenance of chromosomes 2##AK001485|SMC2|10592|structural maintenance of chromosomes 2##BC032705|SMC2|10592|structural maintenance of chromosomes 2##BC107891|SMC2|10592|structural maintenance of chromosomes 2	0.999111	0.0	denovo_WM_7:4:0.235	denovo_WM_7:5:0.235	denovo_WM_7:6:0.235	denovo_WM_7:7:0.235
chr12	51896310	51896411	reg1005726.p2	6.615	+	TSC_hg19_v1_chr12_+_51818698 BC025994 AF069512 AF107099 CU693092 AL831915	-77576	+	AK299545 TSC_hg19_v1_chr12_+_51818596 NM_001039960 NM_004858 DQ063579	-77762	+	TSC_hg19_v1_chr12_+_51785519 AK128321	-110839	+	TSC_hg19_v1_chr12_+_51985016 AB027567 NM_014191	88657	+	NM_001177984 AF225988 FJ611941	160214	+	AK129980 NM_001013690	329340	-	BC025994|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AF069512|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AF107099|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AL831915|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AK299545|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##NM_001039960|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##NM_004858|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##DQ063579|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AK128321|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AB027567|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit##NM_014191|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit##NM_001177984|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit##AF225988|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit##FJ611941|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit##AK129980|FIGNL2|401720|fidgetin-like 2##NM_001013690|FIGNL2|401720|fidgetin-like 2	0.645868	0.0	denovo_WM_7:-33:0.294	denovo_WM_7:-35:0.328
chr6	27470746	27470863	reg1005946.p1	6.615	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-30103	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-114249	+	AF352327 AF336874 BC107050 NM_032030	-178246	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	304919	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	305137	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	306978	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.0	0.0	
chr14	89974069	89974208	reg1004832.p2	6.614	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-90728	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-95362	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-683145	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	111457	-	BC001787 BX247991 AK298930 AK094740 NM_145231	446922	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	448108	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.99954	0.0	denovo_WM_7:0:0.667
chr8	131147051	131147189	reg1005905.p2	6.614	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-118237	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-118426	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-118461	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	308911	-	NM_001115	905714	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1769237	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.99182	0.0	denovo_WM_7:-39:0.992
chr1	155516027	155516162	reg1005043.p1	6.613	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-221802	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-222152	-	BC052277 NM_001105205	-222367	+	AF257305 TSC_hg19_v1_chr1_-_155532251	16112	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	16273	-	TSC_hg19_v1_chr1_-_155532562 AK307595	16487	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.991437	0.0	denovo_WM_7:34:0.853
chr3	47018151	47018300	reg1000117.p1	6.612	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-94483	+	BC112221 BC112247 NM_000316 U17418 X68596	-98976	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-113300	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	20	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	3022	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	11245	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.0	0.0	
chr12	12714083	12714216	reg1006194.p2	6.611	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-203984	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-210977	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-294307	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	1251	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	50646	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	50734	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.0	0.0	
chr14	55348116	55348249	reg1004940.p2	6.611	+	NM_001161577 BC021726	-126655	+	TSC_hg19_v1_chr14_+_55168831 AB028976	-179293	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	-313546	+	AY137463 AY137464 AY137465 Z16418 S44049 CR536551 DQ892998 DQ896245 S43856 S44053 TSC_hg19_v1_chr14_-_55369545 Z29433 Z29434 U66095 BC025415 U19523 U66097 NM_000161 NM_001024024 NM_001024070 NM_001024071	21232	-	TSC_hg19_v1_chr14_-_55493780 BC000622 BC005040 AK293005 BC063041	145603	-	TSC_hg19_v1_chr14_-_55493818 BC043349 NM_001008396 NM_007086	145629	-	NM_001161577|SAMD4A|23034|sterile alpha motif domain containing 4A##BC021726|SAMD4A|23034|sterile alpha motif domain containing 4A##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##AY137463|GCH1|2643|GTP cyclohydrolase 1##AY137464|GCH1|2643|GTP cyclohydrolase 1##AY137465|GCH1|2643|GTP cyclohydrolase 1##Z16418|GCH1|2643|GTP cyclohydrolase 1##S44049|GCH1|2643|GTP cyclohydrolase 1##CR536551|GCH1|2643|GTP cyclohydrolase 1##DQ892998|GCH1|2643|GTP cyclohydrolase 1##DQ896245|GCH1|2643|GTP cyclohydrolase 1##S43856|GCH1|2643|GTP cyclohydrolase 1##S44053|GCH1|2643|GTP cyclohydrolase 1##Z29433|GCH1|2643|GTP cyclohydrolase 1##Z29434|GCH1|2643|GTP cyclohydrolase 1##U66095|GCH1|2643|GTP cyclohydrolase 1##BC025415|GCH1|2643|GTP cyclohydrolase 1##U19523|GCH1|2643|GTP cyclohydrolase 1##U66097|GCH1|2643|GTP cyclohydrolase 1##NM_000161|GCH1|2643|GTP cyclohydrolase 1##NM_001024024|GCH1|2643|GTP cyclohydrolase 1##NM_001024070|GCH1|2643|GTP cyclohydrolase 1##NM_001024071|GCH1|2643|GTP cyclohydrolase 1##BC000622|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC005040|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##AK293005|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC063041|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC043349|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_001008396|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_007086|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1	0.185593	0.285539	CTCF.p2:-95:0.286
chr16	29691189	29691324	reg1005663.p2	6.611	+	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-774	+	AK293195 NM_014298 TSC_hg19_v1_chr16_+_29690460	-862	+	TSC_hg19_v1_chr16_+_29674982 AB464706 DQ892262 DQ895464	-16242	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	66045	-	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	98330	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	110795	+	BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK293195|QPRT|23475|quinolinate phosphoribosyltransferase##NM_014298|QPRT|23475|quinolinate phosphoribosyltransferase##DQ892262|SPN|6693|sialophorin##DQ895464|SPN|6693|sialophorin##BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22	0.990819	0.0	denovo_WM_7:31:0.237	denovo_WM_7:32:0.237	denovo_WM_7:33:0.237	denovo_WM_7:34:0.237
chr2	30645105	30645208	reg1004820.p1	6.611	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	-190654	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-275280	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	-275323	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	24992	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	385137	-	AK122747 NM_001253827	707341	-	AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)##BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13##AK122747|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253827|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)	0.994037	0.0	denovo_WM_7:-7:0.487	denovo_WM_7:-9:0.255
chr1	51978441	51978582	reg1005269.p1	6.610	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-90745	-	AF007170 NM_001144832	-167773	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-182279	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	6412	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	6513	-	NM_024586 NM_148906 NM_148908 NM_148909	104034	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.995327	0.0	
chr17	8030212	8030356	reg1005462.p1	6.609	+	BC039887 AB049064 AB463716 NM_001165967 NM_032580	-2882	-	AK296416 AK299742 NM_001165960	-8101	-	AJ269499 AK313677 NM_021628	-8452	-	TSC_hg19_v1_chr17_-_8055723 AB088477 AF022991 AK291061 NM_002616	25436	-	BC028207 TSC_hg19_v1_chr17_-_8059648 AK295410	29451	-	AL050223 TSC_hg19_v1_chr17_-_8064059	33718	-	BC039887|HES7|84667|hairy and enhancer of split 7 (Drosophila)##AB049064|HES7|84667|hairy and enhancer of split 7 (Drosophila)##NM_001165967|HES7|84667|hairy and enhancer of split 7 (Drosophila)##NM_032580|HES7|84667|hairy and enhancer of split 7 (Drosophila)##AK296416|ALOXE3|59344|arachidonate lipoxygenase 3##AK299742|ALOXE3|59344|arachidonate lipoxygenase 3##NM_001165960|ALOXE3|59344|arachidonate lipoxygenase 3##AJ269499|ALOXE3|59344|arachidonate lipoxygenase 3##AK313677|ALOXE3|59344|arachidonate lipoxygenase 3##NM_021628|ALOXE3|59344|arachidonate lipoxygenase 3##AB088477|PER1|5187|period homolog 1 (Drosophila)##AF022991|PER1|5187|period homolog 1 (Drosophila)##AK291061|PER1|5187|period homolog 1 (Drosophila)##NM_002616|PER1|5187|period homolog 1 (Drosophila)##BC028207|PER1|5187|period homolog 1 (Drosophila)##AK295410|PER1|5187|period homolog 1 (Drosophila)##AL050223|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)	0.01788	0.0	
chr2	120620044	120620194	reg1004937.p1	6.609	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	-102719	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	-183338	+	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	-183385	+	TSC_hg19_v1_chr2_+_120770604 NM_001184937 NM_001184939 NM_020909	150484	+	TSC_hg19_v1_chr2_+_120770652 AK023019 BC054508 AK290895 BC032822 NM_001184938	150614	+	TSC_hg19_v1_chr2_-_120980957 BC016849 AK289880 BC080607 AK024632	360818	-	M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##NM_001184937|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184939|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_020909|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK023019|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC054508|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK290895|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC032822|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184938|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC016849|TMEM185B|79134|transmembrane protein 185B##BC080607|TMEM185B|79134|transmembrane protein 185B##AK024632|TMEM185B|79134|transmembrane protein 185B	0.999815	0.0	denovo_WM_7:-18:0.842
chr11	114030907	114031040	reg1006425.p2	6.608	+	BC026902 NM_001018011	-99716	+	NM_006006 TSC_hg19_v1_chr11_+_113930432 AB208916 BC029812	-100534	+	TSC_hg19_v1_chr11_+_113930296 BX648973	-100668	+	NM_006169	135561	+	AK026845 TSC_hg19_v1_chr11_+_114167171 U08021	136199	+	TSC_hg19_v1_chr11_+_114167214 AB590349 CR541907 DQ892841 DQ896088	136264	+	BC026902|ZBTB16|7704|zinc finger and BTB domain containing 16##NM_001018011|ZBTB16|7704|zinc finger and BTB domain containing 16##NM_006006|ZBTB16|7704|zinc finger and BTB domain containing 16##AB208916|ZBTB16|7704|zinc finger and BTB domain containing 16##BC029812|ZBTB16|7704|zinc finger and BTB domain containing 16##BX648973|ZBTB16|7704|zinc finger and BTB domain containing 16##NM_006169|NNMT|4837|nicotinamide N-methyltransferase##AK026845|NNMT|4837|nicotinamide N-methyltransferase##U08021|NNMT|4837|nicotinamide N-methyltransferase##CR541907|NNMT|4837|nicotinamide N-methyltransferase##DQ892841|NNMT|4837|nicotinamide N-methyltransferase##DQ896088|NNMT|4837|nicotinamide N-methyltransferase	0.148032	0.0	
chr20	33684294	33684474	reg1000225.p2	6.608	+	TSC_hg19_v1_chr20_-_33680611 AK298958 AK303476 AK315582 NM_015638 NM_199368	-3744	-	TSC_hg19_v1_chr20_-_33680600 AK074106	-3788	-	TSC_hg19_v1_chr20_-_33680592 AB590540 CU680522 BC013144	-3912	-	AK096016 AK298794 TSC_hg19_v1_chr20_-_33734933	50529	-	CR457266 CU674674 TSC_hg19_v1_chr20_-_33735112 BC016184 AK300212 AY358580 BC001371 AK023931 AK303816 AK001645 NM_001145025 NM_018217	50740	-	AK314887 NM_006404 BC014451 X89079 L35545 CR456948 DQ892834 DQ896081	75481	+	AK298958|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK303476|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK315582|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##NM_015638|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##NM_199368|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK074106|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##BC013144|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK096016|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK298794|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##CR457266|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC016184|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK300212|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AY358580|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC001371|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK023931|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK303816|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK001645|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_001145025|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_018217|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK314887|PROCR|10544|protein C receptor, endothelial##NM_006404|PROCR|10544|protein C receptor, endothelial##BC014451|PROCR|10544|protein C receptor, endothelial##X89079|PROCR|10544|protein C receptor, endothelial##L35545|PROCR|10544|protein C receptor, endothelial##CR456948|PROCR|10544|protein C receptor, endothelial##DQ892834|PROCR|10544|protein C receptor, endothelial##DQ896081|PROCR|10544|protein C receptor, endothelial	0.999559	0.0	
chr6	364990	365170	reg1000298.p2	6.608	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-72583	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-72995	+	None	None	None	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	26684	+	AF508547 BC101697 BC101699 NM_148959	291873	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	328010	-	AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2	0.0	0.0	
chr19	10349684	10349864	reg1000045.p1	6.607	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-7768	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-44047	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-44169	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	12873	+	TSC_hg19_v1_chr19_+_10362889 BC009858	13124	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	13218	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chr6	150955354	150955492	reg1006307.p1	6.607	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-34403	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-265265	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-491182	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	231409	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	231498	+	TSC_hg19_v1_chr6_+_151187064 AL117452	231678	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	1.972572	0.0	denovo_WM_7:-1:0.792	denovo_WM_7:-26:0.782
chr11	697078	697258	reg1005111.p2	6.606	+	NM_001042463 NM_174940 BC008671 TSC_hg19_v1_chr11_+_695815 AK302585 AK124309	-1446	+	AF049460 AK291383 TSC_hg19_v1_chr11_-_695598 NM_021008	-1598	-	BC042135 BC053322 FJ985253 TSC_hg19_v1_chr11_-_695223	-1958	-	TSC_hg19_v1_chr11_+_706230 NM_022772 AK025588 AK025824 AK225311 AK294041 AK222903	9001	+	TSC_hg19_v1_chr11_+_706613 BC080636	9457	+	AK027765 TSC_hg19_v1_chr11_+_722322	25134	+	NM_001042463|TMEM80|283232|transmembrane protein 80##NM_174940|TMEM80|283232|transmembrane protein 80##BC008671|TMEM80|283232|transmembrane protein 80##AK302585|TMEM80|283232|transmembrane protein 80##AK124309|TMEM80|283232|transmembrane protein 80##AF049460|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##AK291383|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##NM_021008|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##BC042135|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##BC053322|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##FJ985253|DEAF1|10522|deformed epidermal autoregulatory factor 1 (Drosophila)##NM_022772|EPS8L2|64787|EPS8-like 2##AK025588|EPS8L2|64787|EPS8-like 2##AK025824|EPS8L2|64787|EPS8-like 2##AK225311|EPS8L2|64787|EPS8-like 2##AK294041|EPS8L2|64787|EPS8-like 2##AK222903|EPS8L2|64787|EPS8-like 2##BC080636|EPS8L2|64787|EPS8-like 2##AK027765|EPS8L2|64787|EPS8-like 2	0.997346	0.0	denovo_WM_7:-59:0.884
chr7	100787329	100787468	reg1006501.p1	6.606	+	NM_000602 NM_001165413 TSC_hg19_v1_chr7_+_100770384 AK293248 AK297728 AK298048 AK316225 BC020765 X04729 BC010860 X04429 X12701 BC005927 M16006	-16984	+	BC005847 TSC_hg19_v1_chr7_+_100728767 AK092927 AX747810 BC048194 NM_030961 BC011882	-58638	+	TSC_hg19_v1_chr7_+_100663360 AJ606307 AJ606308 NM_001040105	-124033	+	NM_001283 TSC_hg19_v1_chr7_+_100797756 AK312151 BC003561 AB015319	10330	+	BC063835 BC044212 TSC_hg19_v1_chr7_-_100808851 AK225839 NM_003378 BC036537	21454	-	BC037583 BC104841 AK096556 NM_198571	36127	-	NM_000602|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001165413|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK293248|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK297728|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK298048|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK316225|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC020765|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04729|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC010860|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04429|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X12701|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005927|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##M16006|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005847|TRIM56|81844|tripartite motif containing 56##BC048194|TRIM56|81844|tripartite motif containing 56##NM_030961|TRIM56|81844|tripartite motif containing 56##BC011882|TRIM56|81844|tripartite motif containing 56##AJ606307|MUC17|140453|mucin 17, cell surface associated##AJ606308|MUC17|140453|mucin 17, cell surface associated##NM_001040105|MUC17|140453|mucin 17, cell surface associated##NM_001283|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AK312151|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC003561|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AB015319|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC063835|VGF|7425|VGF nerve growth factor inducible##BC044212|VGF|7425|VGF nerve growth factor inducible##AK225839|VGF|7425|VGF nerve growth factor inducible##NM_003378|VGF|7425|VGF nerve growth factor inducible##BC036537|VGF|7425|VGF nerve growth factor inducible##BC037583|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##BC104841|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##AK096556|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)##NM_198571|NAT16|375607|N-acetyltransferase 16 (GCN5-related, putative)	0.999297	0.602134	CTCF.p2:77:0.602
chr4	132371828	132372008	reg1005654.p1	6.604	+	NM_001099783	-2354637	+	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	-2357051	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	-2357328	-	TSC_hg19_v1_chr4_+_134070448 AB037821 AY013874 NM_020815 NM_032961	1698538	+	AK024636 TSC_hg19_v1_chr4_+_134073255 AL157470	1701365	+	NM_001114734 TSC_hg19_v1_chr4_-_135122935	2751000	-	NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##AB037821|PCDH10|57575|protocadherin 10##AY013874|PCDH10|57575|protocadherin 10##NM_020815|PCDH10|57575|protocadherin 10##NM_032961|PCDH10|57575|protocadherin 10##AK024636|PCDH10|57575|protocadherin 10##AL157470|PCDH10|57575|protocadherin 10##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like	0.994921	0.0	denovo_WM_7:-8:0.324	denovo_WM_7:-9:0.324	denovo_WM_7:-10:0.324
chr11	18643598	18643710	reg1004733.p1	6.603	+	TSC_hg19_v1_chr11_-_18610229 AK295501 BC011011 BC064566 AF503350 AK296835 AK316191 AK301537 NM_001040697 NM_018314 AK314521	-33403	-	AB464330 DQ892792 DQ896039 CU677988 AY207473 AY207474 TSC_hg19_v1_chr11_-_18548471 BC002487 U82130 AK130787 NM_006292	-95222	-	AY581313 BC014340 NM_001144071 NM_144972 AK131523	-166253	+	TSC_hg19_v1_chr11_-_18655915 BC056261 BX641102	12251	-	TSC_hg19_v1_chr11_-_18655926 AK304078 BX648478	12287	-	TSC_hg19_v1_chr11_-_18655962 BX647798 NM_194285 AK096760	12346	-	AK295501|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##BC011011|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##BC064566|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##AF503350|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##AK296835|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##AK316191|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##AK301537|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##NM_001040697|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##NM_018314|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##AK314521|UEVLD|55293|UEV and lactate/malate dehyrogenase domains##DQ892792|TSG101|7251|tumor susceptibility gene 101##DQ896039|TSG101|7251|tumor susceptibility gene 101##AY207473|TSG101|7251|tumor susceptibility gene 101##AY207474|TSG101|7251|tumor susceptibility gene 101##BC002487|TSG101|7251|tumor susceptibility gene 101##U82130|TSG101|7251|tumor susceptibility gene 101##AK130787|TSG101|7251|tumor susceptibility gene 101##NM_006292|TSG101|7251|tumor susceptibility gene 101##AY581313|LDHAL6A|160287|lactate dehydrogenase A-like 6A##BC014340|LDHAL6A|160287|lactate dehydrogenase A-like 6A##NM_001144071|LDHAL6A|160287|lactate dehydrogenase A-like 6A##NM_144972|LDHAL6A|160287|lactate dehydrogenase A-like 6A##AK131523|LDHAL6A|160287|lactate dehydrogenase A-like 6A##BC056261|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)##BX641102|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)##AK304078|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)##BX648478|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)##BX647798|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)##NM_194285|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)##AK096760|SPTY2D1|144108|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	0.996099	0.0	denovo_WM_7:-9:0.249	denovo_WM_7:-10:0.249	denovo_WM_7:-11:0.249	denovo_WM_7:-12:0.249
chr3	119013891	119014064	reg1006114.p2	6.603	+	TSC_hg19_v1_chr3_+_119013513 AK293726 BC112163 BC112165 AB384581 HQ258543	-357	+	TSC_hg19_v1_chr3_+_119013229 AB033030 NM_020754	-746	+	TSC_hg19_v1_chr3_-_118959726 AK001006 AK301688 AK314425 BX647468 CR749555 NM_003778 NM_212543	-54240	-	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	168492	-	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	173848	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	203496	+	AK293726|ARHGAP31|57514|Rho GTPase activating protein 31##BC112163|ARHGAP31|57514|Rho GTPase activating protein 31##BC112165|ARHGAP31|57514|Rho GTPase activating protein 31##HQ258543|ARHGAP31|57514|Rho GTPase activating protein 31##AB033030|ARHGAP31|57514|Rho GTPase activating protein 31##NM_020754|ARHGAP31|57514|Rho GTPase activating protein 31##AK001006|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK301688|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK314425|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BX647468|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##CR749555|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_003778|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_212543|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1	0.993753	0.0	denovo_WM_7:12:0.702
chr6	16759693	16759873	reg1005736.p2	6.603	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-520932	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-616473	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-630346	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	1914	-	NM_001190766	342705	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	522071	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	2.169866	0.0	denovo_WM_7:0:0.802	denovo_WM_7:-15:0.624	denovo_WM_7:-16:0.359
chr7	30264256	30264367	reg1006548.p1	6.602	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	-89729	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-196020	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-196310	+	AF513707 NM_147128	59611	+	TSC_hg19_v1_chr7_+_30324515 AF527533	60238	+	TSC_hg19_v1_chr7_+_30324634 AY054122	60345	+	NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AY054122|ZNRF2|223082|zinc and ring finger 2	0.0	0.0	
chr9	38107418	38107536	reg1005866.p1	6.602	+	X75342 NM_003028 TSC_hg19_v1_chr9_-_38069225 BC094765	-38236	-	BC136581 BC136582 TSC_hg19_v1_chr9_-_38069194	-38336	-	TSC_hg19_v1_chr9_-_37904351 AK098185 NM_033412	-203111	-	TSC_hg19_v1_chr9_+_38392669 NM_000692	285196	+	TSC_hg19_v1_chr9_+_38392698 AK313344	285220	+	TSC_hg19_v1_chr9_+_38392760 AK297020 BC001619 AK225950	285265	+	X75342|SHB|6461|Src homology 2 domain containing adaptor protein B##NM_003028|SHB|6461|Src homology 2 domain containing adaptor protein B##BC136581|SHB|6461|Src homology 2 domain containing adaptor protein B##BC136582|SHB|6461|Src homology 2 domain containing adaptor protein B##AK098185|MCART1|92014|mitochondrial carrier triple repeat 1##NM_033412|MCART1|92014|mitochondrial carrier triple repeat 1##NM_000692|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##AK313344|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##AK297020|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##BC001619|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1##AK225950|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1	0.998263	0.0	denovo_WM_7:-28:0.522	denovo_WM_7:-29:0.203	denovo_WM_7:-31:0.202
chr9	5768450	5768618	reg1005821.p2	6.602	+	BC036853 TSC_hg19_v1_chr9_-_5630098	-138444	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	-139407	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-257871	+	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	64417	-	TSC_hg19_v1_chr9_-_5833067 AK127218	64533	-	TSC_hg19_v1_chr9_-_5833082 NM_024896	64544	-	BC036853|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AK127218|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##NM_024896|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.105164	0.0	
chr8	81351641	81351752	reg1004965.p1	6.601	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-267926	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	-358667	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	-409194	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	46788	+	AK131274 NM_001033723	435319	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	672618	-	BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1	0.979111	0.0	denovo_WM_7:-42:0.811
chr1	108954230	108954336	reg1006468.p1	6.600	+	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	-167601	-	TSC_hg19_v1_chr1_+_108742987 AK130480	-211274	+	TSC_hg19_v1_chr1_-_108742975 AK304165 NM_013386	-211298	-	NM_001143987 NM_001143988 BC125161 BC125162	38639	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	148759	+	BC088366 TSC_hg19_v1_chr1_-_109203698 NM_001102592 BC012198	249485	-	BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK304165|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_013386|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B##BC088366|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_001102592|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##BC012198|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)	1.013411	0.0	denovo_WM_7:34:0.951
chr17	33701372	33701487	reg1006339.p1	6.599	+	AL831964 BC052586 AK092241 AX747425 TSC_hg19_v1_chr17_-_33700641 NM_001104587 NM_001104588 NM_001104589 NM_001104590 NM_152270	-760	-	TSC_hg19_v1_chr17_+_33570090 NM_144975 AK303632 BX647942 AK054668 AK303299 BC021238	-131336	+	AK097473 BC136422 BC140700 NM_152462	-180036	-	AK001122 BC035605 NM_018042	58101	-	TSC_hg19_v1_chr17_-_33775787 CR749630 AK056514 AL832726 AK122750 NM_144682	74382	-	NM_001195790	113328	-	AL831964|SLFN11|91607|schlafen family member 11##BC052586|SLFN11|91607|schlafen family member 11##AK092241|SLFN11|91607|schlafen family member 11##NM_001104587|SLFN11|91607|schlafen family member 11##NM_001104588|SLFN11|91607|schlafen family member 11##NM_001104589|SLFN11|91607|schlafen family member 11##NM_001104590|SLFN11|91607|schlafen family member 11##NM_152270|SLFN11|91607|schlafen family member 11##NM_144975|SLFN5|162394|schlafen family member 5##AK303632|SLFN5|162394|schlafen family member 5##BX647942|SLFN5|162394|schlafen family member 5##AK054668|SLFN5|162394|schlafen family member 5##AK303299|SLFN5|162394|schlafen family member 5##BC021238|SLFN5|162394|schlafen family member 5##AK097473|SLC35G3|146861|solute carrier family 35, member G3##BC136422|SLC35G3|146861|solute carrier family 35, member G3##BC140700|SLC35G3|146861|solute carrier family 35, member G3##NM_152462|SLC35G3|146861|solute carrier family 35, member G3##AK001122|SLFN12|55106|schlafen family member 12##BC035605|SLFN12|55106|schlafen family member 12##NM_018042|SLFN12|55106|schlafen family member 12##CR749630|SLFN13|146857|schlafen family member 13##AK056514|SLFN13|146857|schlafen family member 13##AL832726|SLFN13|146857|schlafen family member 13##AK122750|SLFN13|146857|schlafen family member 13##NM_144682|SLFN13|146857|schlafen family member 13##NM_001195790|SLFN12L|100506736|schlafen family member 12-like	0.0	0.0	
chr5	63491966	63492099	reg1006500.p1	6.599	+	TSC_hg19_v1_chr5_+_63461666 AK090756 AX746601 NM_001113561 NM_178532 BC101277 BC101278 BC101279 AL832580 BC101397	-30351	+	AK314187 TSC_hg19_v1_chr5_-_63258084	-234010	-	AF498978 BC069159 NM_000524 AB464441 BC136263 TSC_hg19_v1_chr5_-_63257719 AK291429 AK311460	-234370	-	BC140707 NM_001029875 BX640900	310449	+	NM_001164442 TSC_hg19_v1_chr5_+_63986235	494153	+	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	572414	-	AK090756|RNF180|285671|ring finger protein 180##NM_001113561|RNF180|285671|ring finger protein 180##NM_178532|RNF180|285671|ring finger protein 180##BC101277|RNF180|285671|ring finger protein 180##BC101278|RNF180|285671|ring finger protein 180##BC101279|RNF180|285671|ring finger protein 180##AL832580|RNF180|285671|ring finger protein 180##BC101397|RNF180|285671|ring finger protein 180##AK314187|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AF498978|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC069159|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##NM_000524|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC136263|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK291429|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC140707|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##NM_001029875|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##BX640900|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##NM_001164442|FAM159B|100132916|family with sequence similarity 159, member B##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1	0.991285	0.0	denovo_WM_7:-6:0.495	denovo_WM_7:-7:0.323
chr1	25096253	25096433	reg1006835.p1	6.598	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-24338	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-24410	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-24512	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	160082	-	TSC_hg19_v1_chr1_-_25256761 AK301044	160396	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	160443	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.983929	0.0	denovo_WM_7:18:0.973
chr1	67804072	67804252	reg1004560.p1	6.598	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-30599	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-31081	+	AF461422 NM_144701	-171994	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	91861	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	91910	-	TSC_hg19_v1_chr1_-_67896086 AK312256	91923	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.910169	0.0	denovo_WM_7:7:0.880
chr6	106964676	106964856	reg1005415.p1	6.597	+	TSC_hg19_v1_chr6_+_106960443 U83115	-4355	+	AK056705 NM_001624	-5037	+	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	-191103	-	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	112514	-	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	112731	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	384706	+	U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203	0.0	0.0	
chrX	11792783	11792892	reg1005078.p1	6.597	+	NM_006800 AK025642	-15090	+	NM_001193270 AK300814	-16120	+	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	-16494	+	AB002314 NM_014728 AK289694	363753	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	1016660	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	1016731	+	NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AB002314|FRMPD4|9758|FERM and PDZ domain containing 4##NM_014728|FRMPD4|9758|FERM and PDZ domain containing 4##AK289694|FRMPD4|9758|FERM and PDZ domain containing 4##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2	0.0	0.952115	CTCF.p2:11:0.952
chr12	121647476	121647656	reg1006463.p1	6.596	+	NM_002562 TSC_hg19_v1_chr12_+_121570744 AK294126 AK290405 AK296432 BC011913 BC121157 BC121158 AB209709 BC007679 AK090866 AK225163 AX746656 Y09561 GQ180122 DQ893457 DQ896337 AB590390 CU680114 AY847298 AY847299 AY847300 AY847301 AY847302 AY847303 AY847304 DQ399293	-76865	+	TSC_hg19_v1_chr12_-_121476781 HQ258301 AJ225089 AK314419 NM_003733 NM_198213 AK023956 BC117408 BC117410	-170783	-	TSC_hg19_v1_chr12_-_121454291 AK222630 AK299170 AK301566 AK022510 AK225162 NM_022895 AK307971	-193272	-	U83993 NM_002560	95	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	326	+	TSC_hg19_v1_chr12_+_121647948 BC035845 Y07684 BC033826 AB464108 DQ890906 DQ894059 CU689766 AK225604 BT019738 BT019739 AK301080 AF000234	436	+	NM_002562|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK294126|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK290405|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK296432|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC011913|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121157|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121158|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AB209709|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC007679|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK090866|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK225163|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##Y09561|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##GQ180122|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ893457|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ896337|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847298|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847299|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847300|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847301|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847302|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847303|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847304|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ399293|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##HQ258301|OASL|8638|2'-5'-oligoadenylate synthetase-like##AJ225089|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK314419|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_003733|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_198213|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK023956|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117408|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117410|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK222630|C12orf43|64897|chromosome 12 open reading frame 43##AK299170|C12orf43|64897|chromosome 12 open reading frame 43##AK301566|C12orf43|64897|chromosome 12 open reading frame 43##AK022510|C12orf43|64897|chromosome 12 open reading frame 43##AK225162|C12orf43|64897|chromosome 12 open reading frame 43##NM_022895|C12orf43|64897|chromosome 12 open reading frame 43##AK307971|C12orf43|64897|chromosome 12 open reading frame 43##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC035845|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##Y07684|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC033826|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ890906|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ894059|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK225604|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019738|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019739|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK301080|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AF000234|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4	1.818025	0.0	denovo_WM_7:-1:0.360	denovo_WM_7:-2:0.410	denovo_WM_7:12:0.344	denovo_WM_7:13:0.380
chr12	57077760	57077881	reg1003867.p1	6.596	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-37994	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-38065	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-47694	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	4030	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	4120	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	4181	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	1.756014	0.0	denovo_WM_7:-53:0.305	denovo_WM_7:-69:0.302	denovo_WM_7:-70:0.206	denovo_WM_7:-71:0.280
chr12	8796997	8797177	reg1005197.p2	6.596	+	AB040431 BC006296 NM_020661	-31648	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-103613	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-130856	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	18209	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	18314	-	AK124368 TSC_hg19_v1_chr12_-_8815486	18395	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	1.215196	0.0	denovo_WM_7:23:0.507	denovo_WM_7:43:0.314
chr2	123498280	123498414	reg1005054.p2	6.596	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-985110	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-1003882	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-1090702	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1284517	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	3915360	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	3915445	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.998872	0.0	
chr11	68024973	68025094	reg1006875.p1	6.595	+	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	-44054	-	NM_001277 NM_212469 TSC_hg19_v1_chr11_-_67888859	-136145	-	D10704 BC036471 TSC_hg19_v1_chr11_-_67888844	-136276	-	TSC_hg19_v1_chr11_-_68039418 AF264781	14353	-	TSC_hg19_v1_chr11_-_68039453 NM_022338	14425	-	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	55056	+	AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_001277|CHKA|1119|choline kinase alpha##NM_212469|CHKA|1119|choline kinase alpha##D10704|CHKA|1119|choline kinase alpha##BC036471|CHKA|1119|choline kinase alpha##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5	0.874765	0.646529	CTCF.p2:1:0.647	denovo_WM_7:-34:0.365	denovo_WM_7:-35:0.236
chr12	12954732	12954858	reg1006512.p1	6.595	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	-16218	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	-75939	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-84669	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	11495	+	NM_003979	89160	+	AK001761 TSC_hg19_v1_chr12_+_13044469	89616	+	BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_003979|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A##AK001761|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A	1.686329	0.0	denovo_WM_7:47:0.544	denovo_WM_7:62:0.533
chr12	49628982	49629114	reg1003395.p1	6.595	+	TSC_hg19_v1_chr12_-_49582864 BC006468 BC050637 AF141347 AK057842 AK297775 BC057823 NM_006009 AK298838	-46216	-	TSC_hg19_v1_chr12_-_49582309 AK289483	-46664	-	TSC_hg19_v1_chr12_-_49525284 NM_006082	-103761	-	TSC_hg19_v1_chr12_+_49658864 D28390 AK223024 BC005946 NM_032704	29815	+	TSC_hg19_v1_chr12_+_49658867 BC011790 BC004949 BC033064 BC051297 BC019298 BC021088	29836	+	NM_006262 TSC_hg19_v1_chr12_+_49688929 BC032703 AB528454 CU689492 DQ893358 DQ896677	59897	+	BC006468|TUBA1A|7846|tubulin, alpha 1a##BC050637|TUBA1A|7846|tubulin, alpha 1a##AF141347|TUBA1A|7846|tubulin, alpha 1a##AK057842|TUBA1A|7846|tubulin, alpha 1a##AK297775|TUBA1A|7846|tubulin, alpha 1a##BC057823|TUBA1A|7846|tubulin, alpha 1a##NM_006009|TUBA1A|7846|tubulin, alpha 1a##AK298838|TUBA1A|7846|tubulin, alpha 1a##AK289483|TUBA1A|7846|tubulin, alpha 1a##NM_006082|TUBA1B|10376|tubulin, alpha 1b##D28390|TUBA1C|84790|tubulin, alpha 1c##AK223024|TUBA1C|84790|tubulin, alpha 1c##BC005946|TUBA1C|84790|tubulin, alpha 1c##NM_032704|TUBA1C|84790|tubulin, alpha 1c##BC011790|TUBA1C|84790|tubulin, alpha 1c##BC004949|TUBA1C|84790|tubulin, alpha 1c##BC033064|TUBA1C|84790|tubulin, alpha 1c##BC051297|TUBA1C|84790|tubulin, alpha 1c##BC019298|TUBA1C|84790|tubulin, alpha 1c##BC021088|TUBA1C|84790|tubulin, alpha 1c##NM_006262|PRPH|5630|peripherin##BC032703|PRPH|5630|peripherin##DQ893358|PRPH|5630|peripherin##DQ896677|PRPH|5630|peripherin	0.997839	0.994859	denovo_WM_7:-4:0.881	CTCF.p2:78:0.995
chr3	169897874	169898054	reg1002482.p1	6.595	+	TSC_hg19_v1_chr3_+_169755984 AK311293	-142012	+	TSC_hg19_v1_chr3_+_169755782 BC000181	-142174	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	-142210	+	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	1481	-	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	1564	-	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	42253	+	AK311293|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota	0.988181	0.0	denovo_WM_7:-19:0.833
chrX	149197115	149197229	reg1005193.p2	6.595	+	L43575 TSC_hg19_v1_chrX_-_149106661 U66042 NM_001013845	-90490	-	AK313943 NM_001166400 NM_001166401 NM_005364 BC002455 BC012744	-187202	+	AK292272 AK313321 NM_001080790 BC002351 NM_005365	-333577	+	TSC_hg19_v1_chrX_+_149529838 AK302612	332661	+	TSC_hg19_v1_chrX_+_149531583 NM_001177465 AK294478	334390	+	NM_001177466 NM_005491 U46023 BC136324 AB527434 AK315217	416610	+	L43575|CXorf40B|541578|chromosome X open reading frame 40B##U66042|CXorf40B|541578|chromosome X open reading frame 40B##NM_001013845|CXorf40B|541578|chromosome X open reading frame 40B##AK313943|MAGEA8|4107|melanoma antigen family A, 8##NM_001166400|MAGEA8|4107|melanoma antigen family A, 8##NM_001166401|MAGEA8|4107|melanoma antigen family A, 8##NM_005364|MAGEA8|4107|melanoma antigen family A, 8##BC002455|MAGEA8|4107|melanoma antigen family A, 8##BC012744|MAGEA8|4107|melanoma antigen family A, 8##AK292272|MAGEA9|4108|melanoma antigen family A, 9##AK313321|MAGEA9|4108|melanoma antigen family A, 9##NM_001080790|MAGEA9B|728269|melanoma antigen family A, 9B##BC002351|MAGEA9|4108|melanoma antigen family A, 9##NM_005365|MAGEA9|4108|melanoma antigen family A, 9##AK302612|MAMLD1|10046|mastermind-like domain containing 1##NM_001177465|MAMLD1|10046|mastermind-like domain containing 1##AK294478|MAMLD1|10046|mastermind-like domain containing 1##NM_001177466|MAMLD1|10046|mastermind-like domain containing 1##NM_005491|MAMLD1|10046|mastermind-like domain containing 1##U46023|MAMLD1|10046|mastermind-like domain containing 1##BC136324|MAMLD1|10046|mastermind-like domain containing 1##AK315217|MAMLD1|10046|mastermind-like domain containing 1	1.467119	0.0	denovo_WM_7:8:0.367	denovo_WM_7:10:0.304	denovo_WM_7:-72:0.595
chr14	55375069	55375206	reg1005256.p2	6.594	+	AY137463 AY137464 AY137465 Z16418 S44049 CR536551 DQ892998 DQ896245 S43856 S44053 TSC_hg19_v1_chr14_-_55369545 Z29433 Z29434 U66095 BC025415 U19523 U66097 NM_000161 NM_001024024 NM_001024070 NM_001024071	-5723	-	NM_001161577 BC021726	-153610	+	TSC_hg19_v1_chr14_+_55168831 AB028976	-206248	+	TSC_hg19_v1_chr14_-_55493780 BC000622 BC005040 AK293005 BC063041	118648	-	TSC_hg19_v1_chr14_-_55493818 BC043349 NM_001008396 NM_007086	118674	-	TSC_hg19_v1_chr14_+_55493974 NM_080867 NM_199421 BX161418 CR933659 BC060790 AK124083	118792	+	AY137463|GCH1|2643|GTP cyclohydrolase 1##AY137464|GCH1|2643|GTP cyclohydrolase 1##AY137465|GCH1|2643|GTP cyclohydrolase 1##Z16418|GCH1|2643|GTP cyclohydrolase 1##S44049|GCH1|2643|GTP cyclohydrolase 1##CR536551|GCH1|2643|GTP cyclohydrolase 1##DQ892998|GCH1|2643|GTP cyclohydrolase 1##DQ896245|GCH1|2643|GTP cyclohydrolase 1##S43856|GCH1|2643|GTP cyclohydrolase 1##S44053|GCH1|2643|GTP cyclohydrolase 1##Z29433|GCH1|2643|GTP cyclohydrolase 1##Z29434|GCH1|2643|GTP cyclohydrolase 1##U66095|GCH1|2643|GTP cyclohydrolase 1##BC025415|GCH1|2643|GTP cyclohydrolase 1##U19523|GCH1|2643|GTP cyclohydrolase 1##U66097|GCH1|2643|GTP cyclohydrolase 1##NM_000161|GCH1|2643|GTP cyclohydrolase 1##NM_001024024|GCH1|2643|GTP cyclohydrolase 1##NM_001024070|GCH1|2643|GTP cyclohydrolase 1##NM_001024071|GCH1|2643|GTP cyclohydrolase 1##NM_001161577|SAMD4A|23034|sterile alpha motif domain containing 4A##BC021726|SAMD4A|23034|sterile alpha motif domain containing 4A##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A##BC000622|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC005040|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##AK293005|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC063041|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC043349|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_001008396|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_007086|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_080867|SOCS4|122809|suppressor of cytokine signaling 4##NM_199421|SOCS4|122809|suppressor of cytokine signaling 4##BX161418|SOCS4|122809|suppressor of cytokine signaling 4##CR933659|SOCS4|122809|suppressor of cytokine signaling 4##BC060790|SOCS4|122809|suppressor of cytokine signaling 4##AK124083|SOCS4|122809|suppressor of cytokine signaling 4	0.0	0.0	
chr17	76373643	76373823	reg1003629.p2	6.594	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-17576	-	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-146270	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-163336	+	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	997	+	NM_173628	199742	-	AK316277 TSC_hg19_v1_chr17_-_76719649	345914	-	AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316277|CYTH1|9267|cytohesin 1	1.446567	0.0	denovo_WM_7:39:0.212	denovo_WM_7:54:0.254
chr20	52634513	52634693	reg1003714.p3	6.594	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-423804	-	AF041259 NM_006526	-434968	-	AK302570 NM_001193421	-832782	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	52459	-	AK315220 NM_003657	52700	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	155917	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.365548	0.0	denovo_WM_7:29:0.338
chr4	151951225	151951338	reg1005142.p1	6.594	+	TSC_hg19_v1_chr4_-_151936880 AK098039	-14391	-	AF216648 NM_006726	-14633	-	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	-14863	-	TSC_hg19_v1_chr4_+_152020753 NM_001006 BC001708 M84711 AK308947 BC070211 AK291075 AK296121 BC066926 D28374 AK129825 AK311788 M77234 BC009404 BC018954 BC000204 BC004981 BC009219 BC017123 BC071916 L13802 BC006298 DQ891143 DQ894322 AB464167 CU688198	69486	+	X75686 BC108890 BC108891 BC108892 BC108893 NM_001128924	145398	-	BC032404 BX647422 NM_001009555 NM_001128923	196308	-	AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001006|RPS3A|6189|ribosomal protein S3A##BC001708|RPS3A|6189|ribosomal protein S3A##M84711|RPS3A|6189|ribosomal protein S3A##AK308947|RPS3A|6189|ribosomal protein S3A##BC070211|RPS3A|6189|ribosomal protein S3A##AK291075|RPS3A|6189|ribosomal protein S3A##BC066926|RPS3A|6189|ribosomal protein S3A##D28374|RPS3A|6189|ribosomal protein S3A##AK129825|RPS3A|6189|ribosomal protein S3A##AK311788|RPS3A|6189|ribosomal protein S3A##M77234|RPS3A|6189|ribosomal protein S3A##BC009404|RPS3A|6189|ribosomal protein S3A##BC018954|RPS3A|6189|ribosomal protein S3A##BC000204|RPS3A|6189|ribosomal protein S3A##BC004981|RPS3A|6189|ribosomal protein S3A##BC009219|RPS3A|6189|ribosomal protein S3A##BC017123|RPS3A|6189|ribosomal protein S3A##BC071916|RPS3A|6189|ribosomal protein S3A##L13802|RPS3A|6189|ribosomal protein S3A##BC006298|RPS3A|6189|ribosomal protein S3A##DQ891143|RPS3A|6189|ribosomal protein S3A##DQ894322|RPS3A|6189|ribosomal protein S3A##BC108890|SH3D19|152503|SH3 domain containing 19##BC108891|SH3D19|152503|SH3 domain containing 19##BC108892|SH3D19|152503|SH3 domain containing 19##BC108893|SH3D19|152503|SH3 domain containing 19##NM_001128924|SH3D19|152503|SH3 domain containing 19##BC032404|SH3D19|152503|SH3 domain containing 19##BX647422|SH3D19|152503|SH3 domain containing 19##NM_001009555|SH3D19|152503|SH3 domain containing 19##NM_001128923|SH3D19|152503|SH3 domain containing 19	0.016165	0.0	
chr4	89885650	89885820	reg1005446.p1	6.594	+	AB385402 AB020721 TSC_hg19_v1_chr4_-_89744384 AK027138 BC033006 BC086875 BC058029 AK296932 NM_001015045 AK091787 AX747185	-141454	-	BC104883 TSC_hg19_v1_chr4_-_89618996 AL834329 AK054689 BC022544 NM_153757	-266760	-	AK296379 TSC_hg19_v1_chr4_+_89513611 AK289990 BC038960 D25215 NM_014606	-372114	+	CU687656 BC063126 BC041029 BC053569 BX647410 NM_014883	92484	-	AK091881 AX747234 TSC_hg19_v1_chr4_-_90032571	146824	-	AK027653 NM_145715	148232	+	AB020721|FAM13A|10144|family with sequence similarity 13, member A##AK027138|FAM13A|10144|family with sequence similarity 13, member A##BC033006|FAM13A|10144|family with sequence similarity 13, member A##BC086875|FAM13A|10144|family with sequence similarity 13, member A##BC058029|FAM13A|10144|family with sequence similarity 13, member A##AK296932|FAM13A|10144|family with sequence similarity 13, member A##NM_001015045|FAM13A|10144|family with sequence similarity 13, member A##AK091787|FAM13A|10144|family with sequence similarity 13, member A##BC104883|NAP1L5|266812|nucleosome assembly protein 1-like 5##AL834329|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK054689|NAP1L5|266812|nucleosome assembly protein 1-like 5##BC022544|NAP1L5|266812|nucleosome assembly protein 1-like 5##NM_153757|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK296379|HERC3|8916|hect domain and RLD 3##AK289990|HERC3|8916|hect domain and RLD 3##BC038960|HERC3|8916|hect domain and RLD 3##D25215|HERC3|8916|hect domain and RLD 3##NM_014606|HERC3|8916|hect domain and RLD 3##BC063126|FAM13A|10144|family with sequence similarity 13, member A##BC041029|FAM13A|10144|family with sequence similarity 13, member A##BC053569|FAM13A|10144|family with sequence similarity 13, member A##BX647410|FAM13A|10144|family with sequence similarity 13, member A##NM_014883|FAM13A|10144|family with sequence similarity 13, member A##AK091881|FAM13A|10144|family with sequence similarity 13, member A##AK027653|TIGD2|166815|tigger transposable element derived 2##NM_145715|TIGD2|166815|tigger transposable element derived 2	1.993515	0.0	denovo_WM_7:-53:0.944	denovo_WM_7:57:0.310	denovo_WM_7:58:0.310	denovo_WM_7:59:0.310
chr1	51967042	51967157	reg1005986.p2	6.593	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-79333	-	AF007170 NM_001144832	-156361	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-170867	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	17824	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	17925	-	NM_024586 NM_148906 NM_148908 NM_148909	115446	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.963693	0.0	denovo_WM_7:-10:0.821
chr3	171532040	171532206	reg1001079.p2	6.592	+	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	-3868	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-354052	-	NM_000340	-787356	-	NM_001164436 AK026825	29025	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	225292	+	TSC_hg19_v1_chr3_+_171757437 AK127826	225311	+	AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B	0.0	0.0	
chr19	18574066	18574162	reg1006377.p1	6.591	+	AK296022 TSC_hg19_v1_chr19_-_18548975 AK092179 AX747394 NM_001170938 NM_016368	-25074	-	CU676344 DQ893465 DQ896336 AK001325 TSC_hg19_v1_chr19_-_18548942 AK093461 NM_001170939 AF207640 BC018952 AF086921 BC017189 BC066902 AF220530 AK021526	-25238	-	AL137749 NM_001253389	-25996	-	AB208794 TSC_hg19_v1_chr19_-_18632875 AK293105 AK225481 U16282	58752	-	TSC_hg19_v1_chr19_-_18632948 BC049195 NM_006532	58813	-	TSC_hg19_v1_chr19_-_18653874 AK300571	79663	-	AK296022|ISYNA1|51477|inositol-3-phosphate synthase 1##AK092179|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001170938|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_016368|ISYNA1|51477|inositol-3-phosphate synthase 1##DQ893465|ISYNA1|51477|inositol-3-phosphate synthase 1##DQ896336|ISYNA1|51477|inositol-3-phosphate synthase 1##AK001325|ISYNA1|51477|inositol-3-phosphate synthase 1##AK093461|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001170939|ISYNA1|51477|inositol-3-phosphate synthase 1##AF207640|ISYNA1|51477|inositol-3-phosphate synthase 1##BC018952|ISYNA1|51477|inositol-3-phosphate synthase 1##AF086921|ISYNA1|51477|inositol-3-phosphate synthase 1##BC066902|ISYNA1|51477|inositol-3-phosphate synthase 1##AF220530|ISYNA1|51477|inositol-3-phosphate synthase 1##AK021526|ISYNA1|51477|inositol-3-phosphate synthase 1##AL137749|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001253389|ISYNA1|51477|inositol-3-phosphate synthase 1##AB208794|ELL|8178|elongation factor RNA polymerase II##AK293105|ELL|8178|elongation factor RNA polymerase II##AK225481|ELL|8178|elongation factor RNA polymerase II##U16282|ELL|8178|elongation factor RNA polymerase II##BC049195|ELL|8178|elongation factor RNA polymerase II##NM_006532|ELL|8178|elongation factor RNA polymerase II##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa	1.51734	0.109009	denovo_WM_7:27:0.249	denovo_WM_7:42:0.218
chr5	81147819	81147996	reg1005492.p2	6.591	+	TSC_hg19_v1_chr5_-_81046990 NM_012446	-100799	-	TSC_hg19_v1_chr5_-_81046929 AB528651 CU677799 DQ891620 DQ894812 EU176592 EU831646 EU831730 AK293544 AK074537 AK294864 AK297494 AF161465 AF077048 AK299858 AK312337 CR936787 AL080076 BC017020	-101008	-	BC075011 BC075010 AK122960 AB078619 BC089437 NM_130767 TSC_hg19_v1_chr5_-_80690052	-457905	-	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	119938	+	AF318326 TSC_hg19_v1_chr5_+_81267992	120083	+	TSC_hg19_v1_chr5_+_81268100 AL136912	120191	+	NM_012446|SSBP2|23635|single-stranded DNA binding protein 2##DQ891620|SSBP2|23635|single-stranded DNA binding protein 2##DQ894812|SSBP2|23635|single-stranded DNA binding protein 2##EU176592|SSBP2|23635|single-stranded DNA binding protein 2##EU831646|SSBP2|23635|single-stranded DNA binding protein 2##EU831730|SSBP2|23635|single-stranded DNA binding protein 2##AK293544|SSBP2|23635|single-stranded DNA binding protein 2##AK074537|SSBP2|23635|single-stranded DNA binding protein 2##AK294864|SSBP2|23635|single-stranded DNA binding protein 2##AK297494|SSBP2|23635|single-stranded DNA binding protein 2##AF161465|SSBP2|23635|single-stranded DNA binding protein 2##AF077048|SSBP2|23635|single-stranded DNA binding protein 2##AK299858|SSBP2|23635|single-stranded DNA binding protein 2##AK312337|SSBP2|23635|single-stranded DNA binding protein 2##CR936787|SSBP2|23635|single-stranded DNA binding protein 2##AL080076|SSBP2|23635|single-stranded DNA binding protein 2##BC017020|SSBP2|23635|single-stranded DNA binding protein 2##BC075011|ACOT12|134526|acyl-CoA thioesterase 12##BC075010|ACOT12|134526|acyl-CoA thioesterase 12##AK122960|ACOT12|134526|acyl-CoA thioesterase 12##AB078619|ACOT12|134526|acyl-CoA thioesterase 12##BC089437|ACOT12|134526|acyl-CoA thioesterase 12##NM_130767|ACOT12|134526|acyl-CoA thioesterase 12##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AF318326|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AL136912|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)	0.0	0.0	
chr20	52085202	52085342	reg1005481.p1	6.589	+	AK302570 NM_001193421	-283451	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-495494	+	BX640770 NM_173485	-496327	+	AF041259 NM_006526	114363	-	TSC_hg19_v1_chr20_-_52210810 AK290350	125527	-	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	601790	-	AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK290350|ZNF217|7764|zinc finger protein 217##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1	1.034269	0.0	
chr2	228250259	228250422	reg1001107.p1	6.589	+	AY358671 BC137256 BC137257 BC035754 TSC_hg19_v1_chr2_-_228244023 AK026453 NM_024795	-6326	-	AF246239 NM_020194	-58113	+	TSC_hg19_v1_chr2_+_228189983 AK026137 BC093024 AF258660	-60296	+	TSC_hg19_v1_chr2_+_228336861 AK097451	86502	+	TSC_hg19_v1_chr2_+_228336877 NM_001135187 NM_001135188 NM_001135189 NM_004504 BC030592 X89478 BC096272 BC096273 BC096274 BC096275 AB527534 CU688928	86666	+	TSC_hg19_v1_chr2_+_228356287 AK295030	105951	+	AY358671|TM4SF20|79853|transmembrane 4 L six family member 20##BC137256|TM4SF20|79853|transmembrane 4 L six family member 20##BC137257|TM4SF20|79853|transmembrane 4 L six family member 20##BC035754|TM4SF20|79853|transmembrane 4 L six family member 20##AK026453|TM4SF20|79853|transmembrane 4 L six family member 20##NM_024795|TM4SF20|79853|transmembrane 4 L six family member 20##AF246239|MFF|56947|mitochondrial fission factor##NM_020194|MFF|56947|mitochondrial fission factor##AK026137|MFF|56947|mitochondrial fission factor##BC093024|MFF|56947|mitochondrial fission factor##AF258660|MFF|56947|mitochondrial fission factor##AK097451|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135187|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135188|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135189|AGFG1|3267|ArfGAP with FG repeats 1##NM_004504|AGFG1|3267|ArfGAP with FG repeats 1##BC030592|AGFG1|3267|ArfGAP with FG repeats 1##X89478|AGFG1|3267|ArfGAP with FG repeats 1##BC096272|AGFG1|3267|ArfGAP with FG repeats 1##BC096273|AGFG1|3267|ArfGAP with FG repeats 1##BC096274|AGFG1|3267|ArfGAP with FG repeats 1##BC096275|AGFG1|3267|ArfGAP with FG repeats 1##AK295030|AGFG1|3267|ArfGAP with FG repeats 1	0.999701	0.0	denovo_WM_7:-83:0.326	denovo_WM_7:-88:0.435
chr3	25691065	25691163	reg1004491.p1	6.589	+	AB208879 TSC_hg19_v1_chr3_-_25683850	-7276	-	TSC_hg19_v1_chr3_-_25679768 M27504	-11400	-	TSC_hg19_v1_chr3_+_25470068 BC060794 AK292032 AB590663 CU687428 AB307688 HQ692864	-220970	+	TSC_hg19_v1_chr3_-_25706085 NM_001068 X68060 Z15111	14861	-	TSC_hg19_v1_chr3_-_25706395 AK296510 AK307450	15279	-	TSC_hg19_v1_chr3_-_25824906 BC000963 AK022471 DQ893509 DQ896501 AK310473	133773	-	AB208879|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##M27504|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##BC060794|RARB|5915|retinoic acid receptor, beta##AK292032|RARB|5915|retinoic acid receptor, beta##AB307688|RARB|5915|retinoic acid receptor, beta##HQ692864|RARB|5915|retinoic acid receptor, beta##NM_001068|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##X68060|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##Z15111|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##AK296510|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##AK307450|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##BC000963|NGLY1|55768|N-glycanase 1##AK022471|NGLY1|55768|N-glycanase 1##DQ893509|NGLY1|55768|N-glycanase 1##DQ896501|NGLY1|55768|N-glycanase 1##AK310473|NGLY1|55768|N-glycanase 1	0.989916	0.0	denovo_WM_7:-6:0.372	denovo_WM_7:-8:0.371
chr4	169931057	169931237	reg1000473.p1	6.589	+	TSC_hg19_v1_chr4_+_169753245 NM_001166110 AB023209	-177970	+	TSC_hg19_v1_chr4_+_169552755 NM_001166109 AK095512	-378351	+	TSC_hg19_v1_chr4_+_169418204 AF464873 NM_001166108 NM_016081 BC140850 BC144666	-512927	+	BC021973 BC033650 TSC_hg19_v1_chr4_-_169931407 AK027337 AK291756 AK299847 AL833393 NM_032783	311	-	BC041023 TSC_hg19_v1_chr4_-_170077830	146672	-	TSC_hg19_v1_chr4_-_170192099 BC053671	260900	-	NM_001166110|PALLD|23022|palladin, cytoskeletal associated protein##AB023209|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166109|PALLD|23022|palladin, cytoskeletal associated protein##AK095512|PALLD|23022|palladin, cytoskeletal associated protein##AF464873|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166108|PALLD|23022|palladin, cytoskeletal associated protein##NM_016081|PALLD|23022|palladin, cytoskeletal associated protein##BC140850|PALLD|23022|palladin, cytoskeletal associated protein##BC144666|PALLD|23022|palladin, cytoskeletal associated protein##BC021973|CBR4|84869|carbonyl reductase 4##BC033650|CBR4|84869|carbonyl reductase 4##AK027337|CBR4|84869|carbonyl reductase 4##AK291756|CBR4|84869|carbonyl reductase 4##AL833393|CBR4|84869|carbonyl reductase 4##NM_032783|CBR4|84869|carbonyl reductase 4##BC041023|SH3RF1|57630|SH3 domain containing ring finger 1##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1	0.0	0.0	
chr6	122093230	122093392	reg1005703.p1	6.589	+	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	-336486	+	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	-437668	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	-2422390	-	TSC_hg19_v1_chr6_+_122720699 NM_001135564 NM_001243094 NM_004506	627384	+	TSC_hg19_v1_chr6_+_122720796 AK225593 AK225594 BC112323 M65217 AK294624 BC005329 BC064622 BC121050 BC121051 BC128420 AK316377 AB463722 CU675115 EU446897	627505	+	CU688532 CU689596 AL137261 TSC_hg19_v1_chr6_-_122792947 AF164794 AB033079 BC014412 BC028607 BC033029 NM_020755 AK075339 AY358429 AK128781 AF087902	699642	-	NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_001135564|HSF2|3298|heat shock transcription factor 2##NM_001243094|HSF2|3298|heat shock transcription factor 2##NM_004506|HSF2|3298|heat shock transcription factor 2##AK225593|HSF2|3298|heat shock transcription factor 2##AK225594|HSF2|3298|heat shock transcription factor 2##BC112323|HSF2|3298|heat shock transcription factor 2##M65217|HSF2|3298|heat shock transcription factor 2##AK294624|HSF2|3298|heat shock transcription factor 2##BC005329|HSF2|3298|heat shock transcription factor 2##BC064622|HSF2|3298|heat shock transcription factor 2##BC121050|HSF2|3298|heat shock transcription factor 2##BC121051|HSF2|3298|heat shock transcription factor 2##BC128420|HSF2|3298|heat shock transcription factor 2##AK316377|HSF2|3298|heat shock transcription factor 2##EU446897|HSF2|3298|heat shock transcription factor 2##AL137261|SERINC1|57515|serine incorporator 1##AF164794|SERINC1|57515|serine incorporator 1##AB033079|SERINC1|57515|serine incorporator 1##BC014412|SERINC1|57515|serine incorporator 1##BC028607|SERINC1|57515|serine incorporator 1##BC033029|SERINC1|57515|serine incorporator 1##NM_020755|SERINC1|57515|serine incorporator 1##AK075339|SERINC1|57515|serine incorporator 1##AY358429|SERINC1|57515|serine incorporator 1##AF087902|SERINC1|57515|serine incorporator 1	0.322552	0.0	
chr9	134498073	134498198	reg1006460.p2	6.589	+	AK057848 TSC_hg19_v1_chr9_-_134406625 BC091495 BC015547 AK022317 NM_001135954 NM_031432	-91485	-	TSC_hg19_v1_chr9_-_134406578 AF254133 CR457281 CU677347 AF237290 AF125106 AK295471 AK307475	-91588	-	AK315218 TSC_hg19_v1_chr9_+_134378402 AK293529 BC022877	-119700	+	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	87067	-	D21239 NM_005312	114789	-	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	117155	-	AK057848|UCK1|83549|uridine-cytidine kinase 1##BC091495|UCK1|83549|uridine-cytidine kinase 1##BC015547|UCK1|83549|uridine-cytidine kinase 1##AK022317|UCK1|83549|uridine-cytidine kinase 1##NM_001135954|UCK1|83549|uridine-cytidine kinase 1##NM_031432|UCK1|83549|uridine-cytidine kinase 1##AF254133|UCK1|83549|uridine-cytidine kinase 1##CR457281|UCK1|83549|uridine-cytidine kinase 1##AF237290|UCK1|83549|uridine-cytidine kinase 1##AF125106|UCK1|83549|uridine-cytidine kinase 1##AK295471|UCK1|83549|uridine-cytidine kinase 1##AK307475|UCK1|83549|uridine-cytidine kinase 1##AK315218|POMT1|10585|protein-O-mannosyltransferase 1##AK293529|POMT1|10585|protein-O-mannosyltransferase 1##BC022877|POMT1|10585|protein-O-mannosyltransferase 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1	0.984867	0.0	denovo_WM_7:29:0.879
chr11	116893445	116893575	reg1006685.p1	6.588	+	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-185155	-	TSC_hg19_v1_chr11_+_116700622 BC121081 BC134419 NM_000040 BC027977	-192886	+	HQ258218 HQ258399 BC113594 BC113596 BC074764 X13629 M13654 NM_000482 TSC_hg19_v1_chr11_-_116694025	-199544	-	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	75523	-	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	121523	+	TSC_hg19_v1_chr11_+_117049458 AK292501	156047	+	X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##BC121081|APOC3|345|apolipoprotein C-III##BC134419|APOC3|345|apolipoprotein C-III##NM_000040|APOC3|345|apolipoprotein C-III##BC027977|APOC3|345|apolipoprotein C-III##HQ258218|APOA4|337|apolipoprotein A-IV##HQ258399|APOA4|337|apolipoprotein A-IV##BC113594|APOA4|337|apolipoprotein A-IV##BC113596|APOA4|337|apolipoprotein A-IV##BC074764|APOA4|337|apolipoprotein A-IV##X13629|APOA4|337|apolipoprotein A-IV##M13654|APOA4|337|apolipoprotein A-IV##NM_000482|APOA4|337|apolipoprotein A-IV##BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292501|SIDT2|51092|SID1 transmembrane family, member 2	0.99899	0.0	denovo_WM_7:47:0.462	denovo_WM_7:48:0.518
chr1	14926534	14926665	reg1004779.p1	6.588	+	TSC_hg19_v1_chr1_+_14925186 AB028949 AY505119 NM_015209 NM_201628	-1405	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	-850658	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	-850676	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	324120	+	AY505121 NM_001018001	329696	+	AY505122 NM_001017999	345815	+	AB028949|KAZN|23254|kazrin, periplakin interacting protein##AY505119|KAZN|23254|kazrin, periplakin interacting protein##NM_015209|KAZN|23254|kazrin, periplakin interacting protein##NM_201628|KAZN|23254|kazrin, periplakin interacting protein##AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein##AY505122|KAZN|23254|kazrin, periplakin interacting protein##NM_001017999|KAZN|23254|kazrin, periplakin interacting protein	0.997271	0.0	denovo_WM_7:5:0.915
chr2	102268567	102268661	reg1000136.p2	6.588	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-177421	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-264625	-	TSC_hg19_v1_chr2_-_102003859 AK094970	-264751	-	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	45738	+	TSC_hg19_v1_chr2_+_102508334 BC045694	239728	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	239918	+	AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AK094970|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4	0.075196	0.0	
chr11	30364795	30364936	reg1003495.p2	6.587	+	TSC_hg19_v1_chr11_+_30344653 AK096287 NM_152316 BX647617 BC047775	-20213	+	NM_000510 NM_001018080	-112303	+	M55514 TSC_hg19_v1_chr11_-_30038533 AK311228 NM_002233	-326334	-	CU689190 NM_001584 U57911	237114	-	TSC_hg19_v1_chr11_-_30605748 AK309809	240883	-	TSC_hg19_v1_chr11_-_30607762 AB209163 AK314833 NM_001145399	242980	-	AK096287|C11orf46|120534|chromosome 11 open reading frame 46##NM_152316|C11orf46|120534|chromosome 11 open reading frame 46##BX647617|C11orf46|120534|chromosome 11 open reading frame 46##BC047775|C11orf46|120534|chromosome 11 open reading frame 46##NM_000510|FSHB|2488|follicle stimulating hormone, beta polypeptide##NM_001018080|FSHB|2488|follicle stimulating hormone, beta polypeptide##M55514|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##AK311228|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_002233|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_001584|MPPED2|744|metallophosphoesterase domain containing 2##U57911|MPPED2|744|metallophosphoesterase domain containing 2##AK309809|MPPED2|744|metallophosphoesterase domain containing 2##AB209163|MPPED2|744|metallophosphoesterase domain containing 2##AK314833|MPPED2|744|metallophosphoesterase domain containing 2##NM_001145399|MPPED2|744|metallophosphoesterase domain containing 2	1.842244	0.0	denovo_WM_7:92:0.919	denovo_WM_7:107:0.924
chr16	71928508	71928642	reg1005841.p1	6.587	+	TSC_hg19_v1_chr16_-_71918084 BC012116 AK313693 BC004563 NM_001201552 NM_001201554 NM_001201556	-10531	-	AF070588 AK296603 NM_001201553 NM_017530	-11148	-	TSC_hg19_v1_chr16_+_71879908 NM_001137675	-48654	+	TSC_hg19_v1_chr16_+_71929421 AK291388 AK297336 BC103745	839	+	TSC_hg19_v1_chr16_+_71929438 AK295066 AK301918 AK057902 AK293022 AK297088 AB097052 D79996 BC000430 BC004359 NM_014761 BC000116	868	+	AY164485 NM_181536	105301	-	BC012116|ZNF821|55565|zinc finger protein 821##AK313693|ZNF821|55565|zinc finger protein 821##BC004563|ZNF821|55565|zinc finger protein 821##NM_001201552|ZNF821|55565|zinc finger protein 821##NM_001201554|ZNF821|55565|zinc finger protein 821##NM_001201556|ZNF821|55565|zinc finger protein 821##AF070588|ZNF821|55565|zinc finger protein 821##AK296603|ZNF821|55565|zinc finger protein 821##NM_001201553|ZNF821|55565|zinc finger protein 821##NM_017530|ZNF821|55565|zinc finger protein 821##NM_001137675|ATXN1L|342371|ataxin 1-like##AK291388|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297336|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC103745|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK295066|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK301918|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK057902|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK293022|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297088|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AB097052|IST1|9798|increased sodium tolerance 1 homolog (yeast)##D79996|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000430|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC004359|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_014761|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000116|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AY164485|PKD1L3|342372|polycystic kidney disease 1-like 3##NM_181536|PKD1L3|342372|polycystic kidney disease 1-like 3	0.99863	0.0	denovo_WM_7:34:0.239	denovo_WM_7:35:0.239	denovo_WM_7:36:0.239	denovo_WM_7:37:0.239
chr17	58227992	58228127	reg1005856.p1	6.587	+	TSC_hg19_v1_chr17_+_58227333 BC069649 M83670 BC074768 CR541766 CU691238	-697	+	TSC_hg19_v1_chr17_+_58227302 BC057792 NM_000717 AK289715 AK298710	-769	+	TSC_hg19_v1_chr17_-_58213006 AK311448	-15048	-	CU691084 TSC_hg19_v1_chr17_-_58469313 BC054344	241259	-	TSC_hg19_v1_chr17_-_58469447 AF533230	241399	-	TSC_hg19_v1_chr17_-_58469580 NM_032582 AK057301	241613	-	BC069649|CA4|762|carbonic anhydrase IV##M83670|CA4|762|carbonic anhydrase IV##BC074768|CA4|762|carbonic anhydrase IV##CR541766|CA4|762|carbonic anhydrase IV##BC057792|CA4|762|carbonic anhydrase IV##NM_000717|CA4|762|carbonic anhydrase IV##AK289715|CA4|762|carbonic anhydrase IV##AK298710|CA4|762|carbonic anhydrase IV##BC054344|USP32|84669|ubiquitin specific peptidase 32##AF533230|USP32|84669|ubiquitin specific peptidase 32##NM_032582|USP32|84669|ubiquitin specific peptidase 32##AK057301|USP32|84669|ubiquitin specific peptidase 32	1.986045	0.0	denovo_WM_7:-14:0.232	denovo_WM_7:-34:0.200	denovo_WM_7:-35:0.233
chr16	61931726	61931853	reg1005561.p2	6.585	+	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-3163592	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-3213133	-	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	-3268044	-	AK124734 NM_001796	138949	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	3224113	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	3224179	-	DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	0.0	0.0	
chr8	110604894	110605063	reg1006445.p2	6.585	+	NM_004215 BC005249 BC022506 AK308950 AB007619 AF006265 AY515724	-52568	+	TSC_hg19_v1_chr8_+_110551942 NM_198120 AK290651 BC017729	-52993	+	AY219181 NM_177531 BC093096 AK128617	-230249	+	AK297182 TSC_hg19_v1_chr8_-_110620232	15248	-	NM_001099756	50440	-	AY705385 AB384607 TSC_hg19_v1_chr8_-_110656972	51951	-	NM_004215|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC005249|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC022506|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK308950|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AB007619|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AF006265|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY515724|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##NM_198120|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK290651|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC017729|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY219181|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_177531|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##BC093096|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##AK297182|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099756|SYBU|55638|syntabulin (syntaxin-interacting)##AY705385|SYBU|55638|syntabulin (syntaxin-interacting)	0.0	0.0	
chr1	205257450	205257630	reg1000781.p1	6.584	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-20906	+	AK293734 NM_001242925	-59482	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-60457	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	33303	-	BC036076 TSC_hg19_v1_chr1_-_205313311	55770	-	AK299227 AK001610 NM_018203 AK096590	68500	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.0	0.0	
chr19	5927329	5927454	reg1006277.p2	6.584	+	AK226026 NM_004058 NM_080590 BC080599 BC019065 BC101513 BC104766 X97966 BC011961	-13050	+	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	-22522	+	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	-23384	-	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	50721	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	50760	-	AK299856 TSC_hg19_v1_chr19_-_5978306 NM_003624 NM_007320 NM_007322	50893	-	AK226026|CAPS|828|calcyphosine##NM_004058|CAPS|828|calcyphosine##NM_080590|CAPS|828|calcyphosine##BC080599|CAPS|828|calcyphosine##BC019065|CAPS|828|calcyphosine##BC101513|CAPS|828|calcyphosine##BC104766|CAPS|828|calcyphosine##X97966|CAPS|828|calcyphosine##BC011961|CAPS|828|calcyphosine##NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3##AK299856|RANBP3|8498|RAN binding protein 3##NM_003624|RANBP3|8498|RAN binding protein 3##NM_007320|RANBP3|8498|RAN binding protein 3##NM_007322|RANBP3|8498|RAN binding protein 3	0.170673	0.061739	
chr12	65009400	65009529	reg1004190.p2	6.583	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-5203	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-163571	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-205686	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	143633	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	143695	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	143720	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.987129	0.0	denovo_WM_7:-1:0.554	denovo_WM_7:1:0.369
chr17	27117779	27117893	reg1005689.p2	6.582	+	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	-46767	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	-62022	+	NM_001160407	-63888	-	TSC_hg19_v1_chr17_-_27139467 AK095569	21611	-	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	51954	-	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	64187	+	NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_001160407|TLCD1|116238|TLC domain containing 1##AK095569|C17orf63|55731|chromosome 17 open reading frame 63##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63##AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)	1.998883	0.0	denovo_WM_7:74:0.530	denovo_WM_7:75:0.285	denovo_WM_7:89:0.290	denovo_WM_7:90:0.535
chr7	100168465	100168634	reg1006571.p2	6.582	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	-31642	+	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	-31738	+	AK124773 NM_173564	-87000	+	NM_001168682	2720	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	15188	-	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	15226	-	AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4	1.987298	0.0	
chr22	43045849	43045946	reg1008972.p1	6.581	+	TSC_hg19_v1_chr22_-_43045399 NM_000398	-494	-	TSC_hg19_v1_chr22_-_43045347 AJ010116 AJ010117 AJ010118 BT009821 AB463000 CU012995 CU013283 CR456435 AF361370 Y09501 BC004821	-565	-	TSC_hg19_v1_chr22_-_43042979 NM_001129819 NM_001171661 NM_007326	-2912	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	44010	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	70958	-	TSC_hg19_v1_chr22_-_43117270 AK312927	71380	-	NM_000398|CYB5R3|1727|cytochrome b5 reductase 3##AJ010116|CYB5R3|1727|cytochrome b5 reductase 3##AJ010117|CYB5R3|1727|cytochrome b5 reductase 3##AJ010118|CYB5R3|1727|cytochrome b5 reductase 3##BT009821|CYB5R3|1727|cytochrome b5 reductase 3##CU012995|CYB5R3|1727|cytochrome b5 reductase 3##CU013283|CYB5R3|1727|cytochrome b5 reductase 3##CR456435|CYB5R3|1727|cytochrome b5 reductase 3##AF361370|CYB5R3|1727|cytochrome b5 reductase 3##Y09501|CYB5R3|1727|cytochrome b5 reductase 3##BC004821|CYB5R3|1727|cytochrome b5 reductase 3##NM_001129819|CYB5R3|1727|cytochrome b5 reductase 3##NM_001171661|CYB5R3|1727|cytochrome b5 reductase 3##NM_007326|CYB5R3|1727|cytochrome b5 reductase 3##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase	0.0	0.0	
chr19	15261344	15261489	reg1005995.p1	6.580	+	TSC_hg19_v1_chr19_-_15236518 U61263 BC011761 BC011722 NM_006844	-24880	-	BC000109 TSC_hg19_v1_chr19_-_15236004	-25428	-	BC126913 CU680024 CU680048 TSC_hg19_v1_chr19_-_15235944	-25570	-	TSC_hg19_v1_chr19_-_15311808 AB209447 NM_000435 U97669	50382	-	BC132958 BC132960 AK026061 NM_024794	81796	-	BC115002 NM_001142886	82396	-	U61263|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC011761|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC011722|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##NM_006844|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC000109|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##BC126913|ILVBL|10994|ilvB (bacterial acetolactate synthase)-like##AB209447|NOTCH3|4854|notch 3##NM_000435|NOTCH3|4854|notch 3##U97669|NOTCH3|4854|notch 3##BC132958|EPHX3|79852|epoxide hydrolase 3##BC132960|EPHX3|79852|epoxide hydrolase 3##AK026061|EPHX3|79852|epoxide hydrolase 3##NM_024794|EPHX3|79852|epoxide hydrolase 3##BC115002|EPHX3|79852|epoxide hydrolase 3##NM_001142886|EPHX3|79852|epoxide hydrolase 3	0.0	0.810465	CTCF.p2:5:0.810
chr19	39495898	39496041	reg1006385.p2	6.580	+	BC012385 AF386743 NM_024907	-29635	-	AK057934 NM_148169	-52643	-	TSC_hg19_v1_chr19_+_39421608 NM_021107 NM_033363 Y11681 BC007499 BC001617	-74366	+	CU677033 TSC_hg19_v1_chr19_-_39522905	26930	-	TSC_hg19_v1_chr19_-_39523185 BC030060 AF436061 BC014527 NM_178820	27264	-	AK131245 NM_001004318	78975	+	BC012385|FBXO17|115290|F-box protein 17##AF386743|FBXO17|115290|F-box protein 17##NM_024907|FBXO17|115290|F-box protein 17##AK057934|FBXO17|115290|F-box protein 17##NM_148169|FBXO17|115290|F-box protein 17##NM_021107|MRPS12|6183|mitochondrial ribosomal protein S12##NM_033363|MRPS12|6183|mitochondrial ribosomal protein S12##Y11681|MRPS12|6183|mitochondrial ribosomal protein S12##BC007499|MRPS12|6183|mitochondrial ribosomal protein S12##BC001617|MRPS12|6183|mitochondrial ribosomal protein S12##BC030060|FBXO27|126433|F-box protein 27##AF436061|FBXO27|126433|F-box protein 27##BC014527|FBXO27|126433|F-box protein 27##NM_178820|FBXO27|126433|F-box protein 27##AK131245|PAPL|390928|iron/zinc purple acid phosphatase-like protein##NM_001004318|PAPL|390928|iron/zinc purple acid phosphatase-like protein	1.047158	0.0	
chr10	82680930	82681072	reg1006516.p1	6.579	+	AK123978 NM_001145719	-380427	+	AK123885 NM_207372	-383344	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-466897	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	954081	+	DQ857894 NM_001165973	956441	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	3218256	+	AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##BC002920|TSPAN14|81619|tetraspanin 14##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein	1.96	0.0	denovo_WM_7:2:0.925	denovo_WM_7:70:0.463	denovo_WM_7:71:0.511
chr1	154838195	154838339	reg1005659.p1	6.579	+	CU692066 HQ448417 AF438203 BC042147 NM_170782	-6005	-	TSC_hg19_v1_chr1_-_154600448 NM_001025107 AK097241	-237802	-	X98561 TSC_hg19_v1_chr1_-_154600438 AB209891 AF084516 BX640741 BX538232	-237853	-	BX649146 TSC_hg19_v1_chr1_-_154840541	2234	-	AF031815 Y08263 TSC_hg19_v1_chr1_-_154842763 AJ251016 AK310077 NM_001204087 NM_002249	4479	-	BT019976 CR541998 TSC_hg19_v1_chr1_-_154909187 L77213	70907	-	HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001025107|ADAR|103|adenosine deaminase, RNA-specific##AK097241|ADAR|103|adenosine deaminase, RNA-specific##AB209891|ADAR|103|adenosine deaminase, RNA-specific##AF084516|ADAR|103|adenosine deaminase, RNA-specific##BX640741|ADAR|103|adenosine deaminase, RNA-specific##BX538232|ADAR|103|adenosine deaminase, RNA-specific##AF031815|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##Y08263|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AJ251016|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AK310077|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001204087|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_002249|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BT019976|PMVK|10654|phosphomevalonate kinase##CR541998|PMVK|10654|phosphomevalonate kinase##L77213|PMVK|10654|phosphomevalonate kinase	0.0	0.0	
chr12	14797288	14797405	reg1005627.p1	6.579	+	NM_024829 TSC_hg19_v1_chr12_-_14720806	-76542	-	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	-76737	-	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	-259074	+	BC136544 BC136545 M73489 TSC_hg19_v1_chr12_-_14849534 S57551 AK310034 NM_004963	52139	-	AB527963 TSC_hg19_v1_chr12_-_14924064 AK311916 BC020884 NM_175054	126695	-	NM_177925 TSC_hg19_v1_chr12_+_14927302	129939	+	NM_024829|PLBD1|79887|phospholipase B domain containing 1##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##BC136544|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##BC136545|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##M73489|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##S57551|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##AK310034|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##NM_004963|GUCY2C|2984|guanylate cyclase 2C (heat stable enterotoxin receptor)##BC020884|HIST4H4|121504|histone cluster 4, H4##NM_175054|HIST4H4|121504|histone cluster 4, H4##NM_177925|H2AFJ|55766|H2A histone family, member J	0.982258	0.017067	denovo_WM_7:-31:0.323	denovo_WM_7:-32:0.588
chr14	89882025	89882205	reg1005223.p1	6.579	+	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-3339	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-591122	+	BC150639 NM_183387 BC032685 TSC_hg19_v1_chr14_-_89259288	-622905	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	1295	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	203480	-	BC001787 BX247991 AK298930 AK094740 NM_145231	538945	-	EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##BC150639|EML5|161436|echinoderm microtubule associated protein like 5##NM_183387|EML5|161436|echinoderm microtubule associated protein like 5##BC032685|EML5|161436|echinoderm microtubule associated protein like 5##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11	0.013207	0.0	
chr4	180046203	180046378	reg1006787.p2	6.578	+	TSC_hg19_v1_chr4_-_178363633 NM_000027 NM_001171988	-1682647	-	AK303370 TSC_hg19_v1_chr4_-_178363567 BC012392 AK312982	-1682697	-	AB528385 CR541715 DQ891353 DQ894534 M64073 TSC_hg19_v1_chr4_-_178363547 X55762	-1682749	-	TSC_hg19_v1_chr4_+_183065111 AK308489	3018835	+	NM_001080477 HE578284 HE578285	3198864	+	TSC_hg19_v1_chr4_-_183838533 BC001286 BC088357 AK293135 AK313221 AK310788	3792240	-	NM_000027|AGA|175|aspartylglucosaminidase##NM_001171988|AGA|175|aspartylglucosaminidase##AK303370|AGA|175|aspartylglucosaminidase##BC012392|AGA|175|aspartylglucosaminidase##AK312982|AGA|175|aspartylglucosaminidase##CR541715|AGA|175|aspartylglucosaminidase##DQ891353|AGA|175|aspartylglucosaminidase##DQ894534|AGA|175|aspartylglucosaminidase##M64073|AGA|175|aspartylglucosaminidase##X55762|AGA|175|aspartylglucosaminidase##AK308489|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##NM_001080477|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##BC001286|DCTD|1635|dCMP deaminase##BC088357|DCTD|1635|dCMP deaminase##AK293135|DCTD|1635|dCMP deaminase##AK313221|DCTD|1635|dCMP deaminase##AK310788|DCTD|1635|dCMP deaminase	0.986851	0.0	denovo_WM_7:-14:0.685
chr1	39505328	39505508	reg1006656.p1	6.577	+	NM_001184979 NM_004552 TSC_hg19_v1_chr1_+_39492021 AK312188 AF047434 BC093057 AF020352 AF086268 BC001884	-13410	+	TSC_hg19_v1_chr1_+_39456956 NM_001136275 NM_024595 AK022728 AK092624 AX747634 AK124799 AK126262 AK223276 AK298890 AK303098 BC001498 BC119745 BC119746 AY326465	-48356	+	BC065247 NM_017821 BC013103	-97959	-	AK299010 NM_012090 TSC_hg19_v1_chr1_+_39547088	41670	+	NM_015038	369757	+	TSC_hg19_v1_chr1_+_39922264 AK023821	416901	+	NM_001184979|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_004552|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AK312188|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF047434|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC093057|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF020352|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF086268|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC001884|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_001136275|AKIRIN1|79647|akirin 1##NM_024595|AKIRIN1|79647|akirin 1##AK022728|AKIRIN1|79647|akirin 1##AK092624|AKIRIN1|79647|akirin 1##AK124799|AKIRIN1|79647|akirin 1##AK126262|AKIRIN1|79647|akirin 1##AK223276|AKIRIN1|79647|akirin 1##AK298890|AKIRIN1|79647|akirin 1##AK303098|AKIRIN1|79647|akirin 1##BC001498|AKIRIN1|79647|akirin 1##BC119745|AKIRIN1|79647|akirin 1##BC119746|AKIRIN1|79647|akirin 1##AY326465|AKIRIN1|79647|akirin 1##NM_017821|RHBDL2|54933|rhomboid, veinlet-like 2 (Drosophila)##BC013103|RHBDL2|54933|rhomboid, veinlet-like 2 (Drosophila)##AK299010|MACF1|23499|microtubule-actin crosslinking factor 1##NM_012090|MACF1|23499|microtubule-actin crosslinking factor 1##NM_015038|KIAA0754|643314|KIAA0754##AK023821|MACF1|23499|microtubule-actin crosslinking factor 1	3.838145	0.0	denovo_WM_7:-87:0.854	denovo_WM_7:-103:0.824
chr19	14192000	14192176	reg1005424.p1	6.577	+	NM_001145028	-22118	-	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-49441	+	AF265242 AY358876 TSC_hg19_v1_chr19_+_14142572	-49503	+	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	9188	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	32966	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	36372	-	NM_001145028|PALM3|342979|paralemmin 3##BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF265242|IL27RA|9466|interleukin 27 receptor, alpha##AY358876|IL27RA|9466|interleukin 27 receptor, alpha##AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.952612	0.0	denovo_WM_7:-31:0.953
chr2	120070599	120070719	reg1005352.p1	6.577	+	TSC_hg19_v1_chr2_+_119981409 AF423424 AK001691 AY029585 AY214461 BX538047 AK291608 AF238864 AF262322 AY082673 BC095421 BC042150	-89232	+	AL833624 NM_001008410 NM_018234 NM_182915 TSC_hg19_v1_chr2_+_119981388	-89274	+	TSC_hg19_v1_chr2_-_119916341 AF525315 BC043189 BC067896 BC142965 NM_182528	-154255	-	BC126395 BC126397 BC144012 BC144014 BC171737 NM_001017927 TSC_hg19_v1_chr2_-_120124372 BC047365 BC105805	53679	-	NM_001079862 TSC_hg19_v1_chr2_+_120124552 FM213122 FM213123 FM213124 FM213125 FM213126 FM213128 NM_001178041 NM_001178042 NM_001178043 NM_020548	53870	+	TSC_hg19_v1_chr2_+_120124566 M15887 BC006466	53925	+	AF423424|STEAP3|55240|STEAP family member 3, metalloreductase##AK001691|STEAP3|55240|STEAP family member 3, metalloreductase##AY029585|STEAP3|55240|STEAP family member 3, metalloreductase##AY214461|STEAP3|55240|STEAP family member 3, metalloreductase##BX538047|STEAP3|55240|STEAP family member 3, metalloreductase##AK291608|STEAP3|55240|STEAP family member 3, metalloreductase##AF238864|STEAP3|55240|STEAP family member 3, metalloreductase##AF262322|STEAP3|55240|STEAP family member 3, metalloreductase##AY082673|STEAP3|55240|STEAP family member 3, metalloreductase##BC095421|STEAP3|55240|STEAP family member 3, metalloreductase##BC042150|STEAP3|55240|STEAP family member 3, metalloreductase##AL833624|STEAP3|55240|STEAP family member 3, metalloreductase##NM_001008410|STEAP3|55240|STEAP family member 3, metalloreductase##NM_018234|STEAP3|55240|STEAP family member 3, metalloreductase##NM_182915|STEAP3|55240|STEAP family member 3, metalloreductase##AF525315|C1QL2|165257|complement component 1, q subcomponent-like 2##BC043189|C1QL2|165257|complement component 1, q subcomponent-like 2##BC067896|C1QL2|165257|complement component 1, q subcomponent-like 2##BC142965|C1QL2|165257|complement component 1, q subcomponent-like 2##NM_182528|C1QL2|165257|complement component 1, q subcomponent-like 2##BC126395|C2orf76|130355|chromosome 2 open reading frame 76##BC126397|C2orf76|130355|chromosome 2 open reading frame 76##BC144012|C2orf76|130355|chromosome 2 open reading frame 76##BC144014|C2orf76|130355|chromosome 2 open reading frame 76##BC171737|C2orf76|130355|chromosome 2 open reading frame 76##NM_001017927|C2orf76|130355|chromosome 2 open reading frame 76##BC047365|C2orf76|130355|chromosome 2 open reading frame 76##BC105805|C2orf76|130355|chromosome 2 open reading frame 76##NM_001079862|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213122|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213123|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213124|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213125|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213126|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213128|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001178041|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001178042|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001178043|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_020548|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##M15887|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##BC006466|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)	0.999132	0.0	denovo_WM_7:-45:0.239	denovo_WM_7:-46:0.239	denovo_WM_7:-47:0.239	denovo_WM_7:-48:0.239
chr3	122871712	122871882	reg1006197.p1	6.577	+	NM_006810 TSC_hg19_v1_chr3_+_122785922 BC001625 D49490	-85879	+	TSC_hg19_v1_chr3_-_122746605 AK309848	-125189	-	TSC_hg19_v1_chr3_-_122746576 AK291407 NM_001031702	-125223	-	NM_012430 TSC_hg19_v1_chr3_+_122920787 AK315771 AF100749	48993	+	AK303070 NM_001199642	263391	-	AB527359 NM_183357	295594	-	NM_006810|PDIA5|10954|protein disulfide isomerase family A, member 5##BC001625|PDIA5|10954|protein disulfide isomerase family A, member 5##D49490|PDIA5|10954|protein disulfide isomerase family A, member 5##AK309848|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##AK291407|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##NM_001031702|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##NM_012430|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK315771|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AF100749|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK303070|ADCY5|111|adenylate cyclase 5##NM_001199642|ADCY5|111|adenylate cyclase 5##NM_183357|ADCY5|111|adenylate cyclase 5	0.998993	0.0	denovo_WM_7:22:0.518	denovo_WM_7:23:0.462
chr7	134627675	134627855	reg1006881.p2	6.577	+	BC014035 TSC_hg19_v1_chr7_+_134576197 BC061926 BC005006 D90452 D90453	-51492	+	NM_033139 NM_033140 TSC_hg19_v1_chr7_+_134576161	-51610	+	TSC_hg19_v1_chr7_+_134464419 BC040354	-163343	+	TSC_hg19_v1_chr7_+_134671258 AK302827 NM_178563 BC030651 AL832281 AK023045 AK311252	43520	+	NM_018295 TSC_hg19_v1_chr7_+_134832838 AK001862 AK225055 AK301268 BC020942	205082	+	NM_001243753 NM_001243755	226460	-	BC014035|CALD1|800|caldesmon 1##BC061926|CALD1|800|caldesmon 1##BC005006|CALD1|800|caldesmon 1##D90452|CALD1|800|caldesmon 1##D90453|CALD1|800|caldesmon 1##NM_033139|CALD1|800|caldesmon 1##NM_033140|CALD1|800|caldesmon 1##BC040354|CALD1|800|caldesmon 1##AK302827|AGBL3|340351|ATP/GTP binding protein-like 3##NM_178563|AGBL3|340351|ATP/GTP binding protein-like 3##BC030651|AGBL3|340351|ATP/GTP binding protein-like 3##AL832281|AGBL3|340351|ATP/GTP binding protein-like 3##AK023045|AGBL3|340351|ATP/GTP binding protein-like 3##NM_018295|TMEM140|55281|transmembrane protein 140##AK001862|TMEM140|55281|transmembrane protein 140##AK225055|TMEM140|55281|transmembrane protein 140##AK301268|TMEM140|55281|transmembrane protein 140##BC020942|TMEM140|55281|transmembrane protein 140##NM_001243753|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243755|C7orf49|78996|chromosome 7 open reading frame 49	0.055131	0.0	
chr8	67319363	67319450	reg1005918.p2	6.576	+	BC002599 BC011031 AK075431 NM_000756	-228639	-	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	-280066	+	NM_033105 BC016742 AF368276 AL133660	-385587	+	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	21900	+	NM_144650 AY033237 AK056992 AK300881 BC047492 BC064634 AK293530 AK300243 AK294114 BC110290	25326	+	NM_152765	86084	+	BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_144650|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AY033237|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK056992|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300881|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC047492|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC064634|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK293530|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300243|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK294114|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC110290|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##NM_152765|C8orf46|254778|chromosome 8 open reading frame 46	1.763047	0.0	denovo_WM_7:-27:0.868	denovo_WM_7:83:0.638
chr20	34328819	34328975	reg1005275.p1	6.575	+	NM_080748 TSC_hg19_v1_chr20_+_34287326 AK000548 AM397245 BC105281 GU727625 AM397244 BC008488 AM397246	-41568	+	TSC_hg19_v1_chr20_-_34287275 AK056242 CU688074 BC018471 BC065560 AK001470 AK301969 AK001265 AK223239 AF097025 AK295215 AK297969 AK302023 AK312293 NM_001198989 NM_021100	-41656	-	TSC_hg19_v1_chr20_-_34252864 NM_001198838 NM_001198840 NM_001198863 NM_006047 NM_152838 NM_152925 NM_152926 NM_152927 NM_152928	-76021	-	L10911 BC107886 TSC_hg19_v1_chr20_-_34329965 L10910 BC131543	1050	-	BC008204 U92990 BC141835 BC158172 TSC_hg19_v1_chr20_-_34330144 AK303910 AK297060 AL833168 AK299165 CR749443 AK299678 BX640714 BX640812	1237	-	BX537770 TSC_hg19_v1_chr20_-_34330177	1280	-	NM_080748|ROMO1|140823|reactive oxygen species modulator 1##AK000548|ROMO1|140823|reactive oxygen species modulator 1##AM397245|ROMO1|140823|reactive oxygen species modulator 1##BC105281|ROMO1|140823|reactive oxygen species modulator 1##GU727625|ROMO1|140823|reactive oxygen species modulator 1##AM397244|ROMO1|140823|reactive oxygen species modulator 1##BC008488|ROMO1|140823|reactive oxygen species modulator 1##AM397246|ROMO1|140823|reactive oxygen species modulator 1##AK056242|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##BC018471|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##BC065560|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK001470|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK301969|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK001265|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK223239|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AF097025|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK295215|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK297969|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK302023|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK312293|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##NM_001198989|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##NM_021100|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##NM_001198838|RBM12|10137|RNA binding motif protein 12##NM_001198840|RBM12|10137|RNA binding motif protein 12##NM_001198863|CPNE1|8904|copine I##NM_006047|RBM12|10137|RNA binding motif protein 12##NM_152838|RBM12|10137|RNA binding motif protein 12##NM_152925|CPNE1|8904|copine I##NM_152926|CPNE1|8904|copine I##NM_152927|CPNE1|8904|copine I##NM_152928|CPNE1|8904|copine I##L10911|RBM39|9584|RNA binding motif protein 39##BC107886|RBM39|9584|RNA binding motif protein 39##L10910|RBM39|9584|RNA binding motif protein 39##BC131543|RBM39|9584|RNA binding motif protein 39##BC008204|RBM39|9584|RNA binding motif protein 39##U92990|RBM39|9584|RNA binding motif protein 39##BC141835|RBM39|9584|RNA binding motif protein 39##BC158172|RBM39|9584|RNA binding motif protein 39##AK303910|RBM39|9584|RNA binding motif protein 39##AL833168|RBM39|9584|RNA binding motif protein 39##AK299165|RBM39|9584|RNA binding motif protein 39##CR749443|RBM39|9584|RNA binding motif protein 39##AK299678|RBM39|9584|RNA binding motif protein 39##BX640714|RBM39|9584|RNA binding motif protein 39##BX640812|RBM39|9584|RNA binding motif protein 39##BX537770|RBM39|9584|RNA binding motif protein 39	0.98621	0.0	
chr5	169232552	169232732	reg1000115.p2	6.575	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-168342	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-168398	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-221921	+	AK055998 NM_001129891	175101	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	300329	+	BC030767 NM_001102609 BC092511	427354	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.0	0.0	
chr10	12319918	12320098	reg1005346.p1	6.574	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-81782	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-81809	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-81826	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	71567	+	TSC_hg19_v1_chr10_+_12391709 BC035745	71709	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	71769	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	0.99708	0.0	denovo_WM_7:-7:0.841
chr1	46562477	46562645	reg1006485.p1	6.574	+	TSC_hg19_v1_chr1_+_46379267 AK027123 AK309510	-183299	+	TSC_hg19_v1_chr1_+_46269283 AB047005 NM_015112 BC065499	-293263	+	BC032544 TSC_hg19_v1_chr1_-_46216325 AK023880 NM_001145349 NM_005897	-346162	-	TSC_hg19_v1_chr1_-_46598298 CR749649 BC021622 NM_003629 EU832448 EU832531 BX537388 BC094768 AK313726 NM_001114172	35917	-	NM_005727 AK313774	78192	+	TSC_hg19_v1_chr1_+_46646203 BC007290 BC000695 BC013404 AF065388 AF133425	83649	+	AK027123|MAST2|23139|microtubule associated serine/threonine kinase 2##AK309510|MAST2|23139|microtubule associated serine/threonine kinase 2##AB047005|MAST2|23139|microtubule associated serine/threonine kinase 2##NM_015112|MAST2|23139|microtubule associated serine/threonine kinase 2##BC065499|MAST2|23139|microtubule associated serine/threonine kinase 2##BC032544|IPP|3652|intracisternal A particle-promoted polypeptide##AK023880|IPP|3652|intracisternal A particle-promoted polypeptide##NM_001145349|IPP|3652|intracisternal A particle-promoted polypeptide##NM_005897|IPP|3652|intracisternal A particle-promoted polypeptide##CR749649|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC021622|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_003629|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832448|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832531|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BX537388|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC094768|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AK313726|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_001114172|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_005727|TSPAN1|10103|tetraspanin 1##AK313774|TSPAN1|10103|tetraspanin 1##BC007290|TSPAN1|10103|tetraspanin 1##BC000695|TSPAN1|10103|tetraspanin 1##BC013404|TSPAN1|10103|tetraspanin 1##AF065388|TSPAN1|10103|tetraspanin 1##AF133425|TSPAN1|10103|tetraspanin 1	2.335536	0.0	denovo_WM_7:-40:0.722	denovo_WM_7:105:0.254	denovo_WM_7:106:0.392
chr3	41244564	41244733	reg1006631.p2	6.574	+	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-3624	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-3699	+	TSC_hg19_v1_chr3_+_40566471 BC101619 BC113415 CR749268	-678148	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	758911	-	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	888185	+	TSC_hg19_v1_chr3_+_42190749 AK294221	946100	+	AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC101619|ZNF621|285268|zinc finger protein 621##BC113415|ZNF621|285268|zinc finger protein 621##CR749268|ZNF621|285268|zinc finger protein 621##BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1	0.979444	0.777244	CTCF.p2:26:0.777	denovo_WM_7:58:0.895
chr6	130214929	130215069	reg1006350.p1	6.574	+	NM_001010876	-32584	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	-183673	-	NM_000426 NM_001079823 Z26653	-1010686	+	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	124726	+	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	321456	-	AK091882 AX747235 NM_001017373	329099	-	NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3	1.042769	0.937748	denovo_WM_7:-23:0.527	denovo_WM_7:-24:0.470	CTCF.p2:50:0.938
chrX	10065638	10065779	reg1002676.p1	6.574	+	BC098455 NM_015691	-81915	+	NM_001195081	-130311	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-311165	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	59346	+	AF041210 AB384764 AY539988 AY539994 AY540022 AY540023 EU446510 NM_001193278 NM_001193279 NM_001193280 NM_001193281	469851	-	AF035360 NM_001193277 AY112903	479196	-	BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC140866|SHROOM2|357|shroom family member 2##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4##AF041210|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539988|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539994|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540022|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540023|MID1|4281|midline 1 (Opitz/BBB syndrome)##EU446510|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193278|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193279|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193280|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193281|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)	0.992182	0.0	
chr10	11287183	11287325	reg1006698.p1	6.573	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-79762	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-79808	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-79829	+	NM_001080491	287019	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	366382	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	497144	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	0.0	0.0	
chr12	4084120	4084271	reg1005824.p1	6.573	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-101695	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-221813	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-221927	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	298849	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	346196	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	404605	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	1.991079	0.0	denovo_WM_7:-13:0.783	denovo_WM_7:-33:0.331	denovo_WM_7:-34:0.331	denovo_WM_7:-35:0.331
chr3	122202055	122202188	reg1004270.p1	6.573	+	BC025762 NM_019069 TSC_hg19_v1_chr3_-_122134925	-67204	-	NM_014367 AK026030 BC010896 BC015060 AF201944 AF107495 AF250321 TSC_hg19_v1_chr3_+_122103076 AK293994 AF191020	-99053	+	BC019231 BC109378 TSC_hg19_v1_chr3_-_122102079 BC054051 BC062725 NM_001017928	-100044	-	S75295 TSC_hg19_v1_chr3_-_122233757 BC090864	31579	-	TSC_hg19_v1_chr3_-_122233764 BC002374 BC003009 AK312713	31651	-	TSC_hg19_v1_chr3_-_122233782 NM_002264	31665	-	BC025762|WDR5B|54554|WD repeat domain 5B##NM_019069|WDR5B|54554|WD repeat domain 5B##NM_014367|FAM162A|26355|family with sequence similarity 162, member A##AK026030|FAM162A|26355|family with sequence similarity 162, member A##BC010896|FAM162A|26355|family with sequence similarity 162, member A##BC015060|FAM162A|26355|family with sequence similarity 162, member A##AF201944|FAM162A|26355|family with sequence similarity 162, member A##AF107495|FAM162A|26355|family with sequence similarity 162, member A##AF250321|FAM162A|26355|family with sequence similarity 162, member A##AK293994|FAM162A|26355|family with sequence similarity 162, member A##AF191020|FAM162A|26355|family with sequence similarity 162, member A##BC109378|CCDC58|131076|coiled-coil domain containing 58##BC054051|CCDC58|131076|coiled-coil domain containing 58##BC062725|CCDC58|131076|coiled-coil domain containing 58##NM_001017928|CCDC58|131076|coiled-coil domain containing 58##S75295|KPNA1|3836|karyopherin alpha 1 (importin alpha 5)##BC090864|KPNA1|3836|karyopherin alpha 1 (importin alpha 5)##BC002374|KPNA1|3836|karyopherin alpha 1 (importin alpha 5)##BC003009|KPNA1|3836|karyopherin alpha 1 (importin alpha 5)##AK312713|KPNA1|3836|karyopherin alpha 1 (importin alpha 5)##NM_002264|KPNA1|3836|karyopherin alpha 1 (importin alpha 5)	0.872988	0.0	denovo_WM_7:78:0.354	denovo_WM_7:79:0.233	denovo_WM_7:80:0.221
chr4	99071630	99071791	reg1006766.p2	6.573	+	CU691442 BC036870 NM_174952	-7365	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	-2310452	+	BC034747 BC041156 TSC_hg19_v1_chr4_-_96470369 NM_003728	-2601334	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	110884	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	508049	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	778550	-	BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC034747|UNC5C|8633|unc-5 homolog C (C. elegans)##BC041156|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_003728|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E	0.232972	0.301427	CTCF.p2:-6:0.301	denovo_WM_7:-26:0.214
chr9	37567068	37567210	reg1006360.p4	6.573	+	TSC_hg19_v1_chr9_+_37485944 BC014331 AK023452 AK302345 AK303167 NM_022490 AK301347 AK024032 AK225050 BC017766 BC001337 CR457313 AK091294 AX746899	-81109	+	TSC_hg19_v1_chr9_-_37465448 AK292404	-101698	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	-101744	-	AF174598 AF176705 NM_012166 TSC_hg19_v1_chr9_-_37576280	9126	-	CR627326 AB435233 TSC_hg19_v1_chr9_-_37592574 BC034247	25380	-	TSC_hg19_v1_chr9_-_37592575 BC029423 NM_001001790 NM_001134484 NM_001134485	25466	-	BC014331|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK023452|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK302345|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK303167|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##NM_022490|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK301347|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK024032|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK225050|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC017766|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC001337|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##CR457313|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK091294|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK292404|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5##AF174598|FBXO10|26267|F-box protein 10##AF176705|FBXO10|26267|F-box protein 10##NM_012166|FBXO10|26267|F-box protein 10##AB435233|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC034247|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC029423|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001001790|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001134484|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001134485|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)	1.965194	0.0	denovo_WM_7:-4:0.347	denovo_WM_7:-6:0.544	denovo_WM_7:9:0.567	denovo_WM_7:11:0.204
chr1	117267532	117267666	reg1005969.p1	6.571	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-57216	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	-153922	-	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	-153984	-	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	29508	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	185043	+	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	276806	+	NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule	0.551775	0.160509	denovo_WM_7:23:0.367
chr16	10832402	10832582	reg1001551.p1	6.571	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-43727	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-158002	-	NM_024997 BC137079 BC144468	-309752	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	5212	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	80056	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	138620	+	HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator	0.994937	0.0	denovo_WM_7:100:0.982
chr17_ctg5_hap1	1586610	1586770	reg1006877.p2	6.571	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.978792	0.0	denovo_WM_7:30:0.954
chr2	157394651	157394831	reg1001539.p1	6.571	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-101787	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-101875	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-102507	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	719552	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	787543	-	NM_001009959 AK296477	789415	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	0.0	0.0	
chrX	52925575	52925707	reg1001693.p1	6.571	+	AF318372 BC062680 NM_133179	-28533	-	AJ318881 NM_130776	-29310	-	BC069129 BC103962 BC103963 BC103964 NM_130775	-84414	+	TSC_hg19_v1_chrX_+_52926321 NM_001242491	681	+	TSC_hg19_v1_chrX_+_52926355 AK057692 BX649013	703	+	TSC_hg19_v1_chrX_+_52926366 AK091598 AX747084	750	+	AF318372|XAGE3|170626|X antigen family, member 3##BC062680|XAGE3|170626|X antigen family, member 3##NM_133179|XAGE3|170626|X antigen family, member 3##AJ318881|XAGE3|170626|X antigen family, member 3##NM_130776|XAGE3|170626|X antigen family, member 3##BC069129|XAGE5|170627|X antigen family, member 5##BC103962|XAGE5|170627|X antigen family, member 5##BC103963|XAGE5|170627|X antigen family, member 5##BC103964|XAGE5|170627|X antigen family, member 5##NM_130775|XAGE5|170627|X antigen family, member 5##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##BX649013|FAM156B|727866|family with sequence similarity 156, member B##AK091598|FAM156B|727866|family with sequence similarity 156, member B	0.997478	0.0	denovo_WM_7:-7:0.758
chr18	3595403	3595583	reg1005981.p1	6.570	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-1351	+	NM_173211	-141722	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-143862	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	249837	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	278791	-	AK294777 AK294717 NM_001242762 NM_001242763	279234	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.801177	0.0	denovo_WM_7:11:0.451	denovo_WM_7:14:0.271
chr2	42866933	42867078	reg1004146.p5	6.570	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-71108	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-71284	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-145303	+	AY158687 AB528920 AB083055 BC063549 NM_148962	124295	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	152746	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	586340	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.660655	0.0	denovo_WM_7:15:0.628
chr7	140602638	140602749	reg1005886.p2	6.570	+	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	-206190	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-229755	+	AB033103 TSC_hg19_v1_chr7_-_140340614	-262083	-	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	21814	-	AF151897 AK024776 NM_016071	111774	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	112057	-	AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AB033103|DENND2A|27147|DENN/MADD domain containing 2A##AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33	0.999494	0.0	
chr3	139656683	139656780	reg1006669.p2	6.569	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-2479	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-2713	+	TSC_hg19_v1_chr3_-_139396815 AK123208 BC034374 BC036218 NM_001200047 NM_178177	-259903	-	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	740228	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	1004036	+	TSC_hg19_v1_chr3_+_140770412 BC051354	1113747	+	AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##AK123208|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC034374|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC036218|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_001200047|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_178177|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.0	0.077096	
chr7	155469842	155469959	reg1005374.p1	6.568	+	TSC_hg19_v1_chr7_+_155437354 AK307515	-32532	+	TSC_hg19_v1_chr7_+_155437182 NM_053043	-32692	+	TSC_hg19_v1_chr7_+_155437147 BC011923	-32749	+	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	131898	-	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	134990	-	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	963331	-	AK307515|RBM33|155435|RNA binding motif protein 33##NM_053043|RBM33|155435|RNA binding motif protein 33##BC011923|RBM33|155435|RNA binding motif protein 33##AY927450|SHH|6469|sonic hedgehog##L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13	1.076222	0.0	denovo_WM_7:22:0.725
chr7	24886698	24886878	reg1004992.p2	6.568	+	TSC_hg19_v1_chr7_-_24797557 NM_001127454 NM_004403	-89191	-	TSC_hg19_v1_chr7_-_24797316 BC125065 BC125066 AF073308	-89449	-	TSC_hg19_v1_chr7_-_24797055 AK290775 AK314402 NM_001127453	-89721	-	AF323727 AY008372 TSC_hg19_v1_chr7_-_25019775 AF392444 BC017731 NM_015550 NM_145320 NM_145321 NM_145322 AB014604	132956	-	AL713681 BC005299 BC008475 BC008477 BC009578 BC009579 BC009582 BC009587 BC009602 BC014359 BC014361 BC015130 BC016006 BC021994 BC022330 BC067222 BC068464 BC070156 BC071761 TSC_hg19_v1_chr7_-_25164884 BC070346 BC009607	278089	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	278152	-	NM_001127454|DFNA5|1687|deafness, autosomal dominant 5##NM_004403|DFNA5|1687|deafness, autosomal dominant 5##BC125065|DFNA5|1687|deafness, autosomal dominant 5##BC125066|DFNA5|1687|deafness, autosomal dominant 5##AF073308|DFNA5|1687|deafness, autosomal dominant 5##AK290775|DFNA5|1687|deafness, autosomal dominant 5##AK314402|DFNA5|1687|deafness, autosomal dominant 5##NM_001127453|DFNA5|1687|deafness, autosomal dominant 5##AF323727|OSBPL3|26031|oxysterol binding protein-like 3##AY008372|OSBPL3|26031|oxysterol binding protein-like 3##AF392444|OSBPL3|26031|oxysterol binding protein-like 3##BC017731|OSBPL3|26031|oxysterol binding protein-like 3##NM_015550|OSBPL3|26031|oxysterol binding protein-like 3##NM_145320|OSBPL3|26031|oxysterol binding protein-like 3##NM_145321|OSBPL3|26031|oxysterol binding protein-like 3##NM_145322|OSBPL3|26031|oxysterol binding protein-like 3##AB014604|OSBPL3|26031|oxysterol binding protein-like 3##AL713681|CYCS|54205|cytochrome c, somatic##BC005299|CYCS|54205|cytochrome c, somatic##BC008475|CYCS|54205|cytochrome c, somatic##BC008477|CYCS|54205|cytochrome c, somatic##BC009578|CYCS|54205|cytochrome c, somatic##BC009579|CYCS|54205|cytochrome c, somatic##BC009582|CYCS|54205|cytochrome c, somatic##BC009587|CYCS|54205|cytochrome c, somatic##BC009602|CYCS|54205|cytochrome c, somatic##BC014359|CYCS|54205|cytochrome c, somatic##BC014361|CYCS|54205|cytochrome c, somatic##BC015130|CYCS|54205|cytochrome c, somatic##BC016006|CYCS|54205|cytochrome c, somatic##BC021994|CYCS|54205|cytochrome c, somatic##BC022330|CYCS|54205|cytochrome c, somatic##BC067222|CYCS|54205|cytochrome c, somatic##BC068464|CYCS|54205|cytochrome c, somatic##BC070156|CYCS|54205|cytochrome c, somatic##BC071761|CYCS|54205|cytochrome c, somatic##BC070346|CYCS|54205|cytochrome c, somatic##BC009607|CYCS|54205|cytochrome c, somatic##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic	1.226547	0.0	denovo_WM_7:-84:0.235	denovo_WM_7:-99:0.224	denovo_WM_7:-100:0.224	denovo_WM_7:-101:0.225
chr4	71615326	71615475	reg1001957.p2	6.567	+	TSC_hg19_v1_chr4_+_71587713 NM_001037442 NM_014961 BC051716 BC053837 BC098433 AB020678 BC071988	-27680	+	BC030809 TSC_hg19_v1_chr4_-_71571018	-44402	-	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	-44581	+	AK094806 NM_001098477	89803	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	90177	-	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	90237	-	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3##NM_014961|RUFY3|22902|RUN and FYVE domain containing 3##BC051716|RUFY3|22902|RUN and FYVE domain containing 3##BC053837|RUFY3|22902|RUN and FYVE domain containing 3##BC098433|RUFY3|22902|RUN and FYVE domain containing 3##AB020678|RUFY3|22902|RUN and FYVE domain containing 3##BC071988|RUFY3|22902|RUN and FYVE domain containing 3##BC030809|LOC641510|641510|uncharacterized LOC641510##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1	1.009438	0.013555	denovo_WM_7:-16:0.449	denovo_WM_7:-17:0.449
chr6	18260676	18260839	reg1005629.p1	6.567	+	TSC_hg19_v1_chr6_+_18155652 BC113093 NM_153042 AK125318	-105102	+	S62904 AK310420 TSC_hg19_v1_chr6_-_18155309 U12387 BC005339 BC009596 NM_000367	-105429	-	AY324850 BC103888 BC103889 BC103890 NM_198586	-137907	-	X64229 TSC_hg19_v1_chr6_-_18264759 BC012442 AK312616 AK298089 AK294079 BC035259 AK297749 NM_001134709 NM_003472	3964	-	AK096832 NM_182757 AB076367 BC063311 AL832329	126910	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	1576878	+	BC113093|KDM1B|221656|lysine (K)-specific demethylase 1B##NM_153042|KDM1B|221656|lysine (K)-specific demethylase 1B##AK125318|KDM1B|221656|lysine (K)-specific demethylase 1B##S62904|TPMT|7172|thiopurine S-methyltransferase##AK310420|TPMT|7172|thiopurine S-methyltransferase##U12387|TPMT|7172|thiopurine S-methyltransferase##BC005339|TPMT|7172|thiopurine S-methyltransferase##BC009596|TPMT|7172|thiopurine S-methyltransferase##NM_000367|TPMT|7172|thiopurine S-methyltransferase##AY324850|NHLRC1|378884|NHL repeat containing 1##BC103888|NHLRC1|378884|NHL repeat containing 1##BC103889|NHLRC1|378884|NHL repeat containing 1##BC103890|NHLRC1|378884|NHL repeat containing 1##NM_198586|NHLRC1|378884|NHL repeat containing 1##X64229|DEK|7913|DEK oncogene##BC012442|DEK|7913|DEK oncogene##AK312616|DEK|7913|DEK oncogene##AK298089|DEK|7913|DEK oncogene##AK294079|DEK|7913|DEK oncogene##BC035259|DEK|7913|DEK oncogene##AK297749|DEK|7913|DEK oncogene##NM_001134709|DEK|7913|DEK oncogene##NM_003472|DEK|7913|DEK oncogene##AK096832|RNF144B|255488|ring finger protein 144B##NM_182757|RNF144B|255488|ring finger protein 144B##AB076367|RNF144B|255488|ring finger protein 144B##BC063311|RNF144B|255488|ring finger protein 144B##AL832329|RNF144B|255488|ring finger protein 144B##BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	0.0	0.0	
chr7	37749723	37749852	reg1004297.p1	6.567	+	BC043356 TSC_hg19_v1_chr7_+_37723380	-26405	+	NM_001206480	-260893	-	NM_014800 TSC_hg19_v1_chr7_-_37488556	-261232	-	AB529245 AY288420 BC120951 BC120952 NM_181791	30208	+	BC036816 NM_016616	138411	+	AF026692 BC047684 BC058911 AK313029 TSC_hg19_v1_chr7_-_37956420 AK303977 AK302357	206624	-	NM_001206480|ELMO1|9844|engulfment and cell motility 1##NM_014800|ELMO1|9844|engulfment and cell motility 1##AY288420|GPR141|353345|G protein-coupled receptor 141##BC120951|GPR141|353345|G protein-coupled receptor 141##BC120952|GPR141|353345|G protein-coupled receptor 141##NM_181791|GPR141|353345|G protein-coupled receptor 141##BC036816|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##NM_016616|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##AF026692|SFRP4|6424|secreted frizzled-related protein 4##BC047684|SFRP4|6424|secreted frizzled-related protein 4##BC058911|SFRP4|6424|secreted frizzled-related protein 4##AK313029|SFRP4|6424|secreted frizzled-related protein 4##AK303977|SFRP4|6424|secreted frizzled-related protein 4##AK302357|SFRP4|6424|secreted frizzled-related protein 4	0.053522	0.0	
chr17	76195357	76195481	reg1005744.p2	6.566	+	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	-11996	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	-12240	-	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	-30759	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	14880	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	14978	+	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	32044	+	BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235	1.323498	0.013774	denovo_WM_7:36:0.369	denovo_WM_7:40:0.507	denovo_WM_7:51:0.339
chr17	78074409	78074557	reg1005883.p1	6.565	+	NM_001243342 NM_017950 TSC_hg19_v1_chr17_+_78010456 BC035251 AK000760 BC058288	-64035	+	TSC_hg19_v1_chr17_-_78009672 BC028290 NM_019020	-64881	-	BC044939 TSC_hg19_v1_chr17_+_77893233	-181284	+	TSC_hg19_v1_chr17_+_78075349 NM_000152 NM_001079803 NM_001079804	843	+	AK299462 TSC_hg19_v1_chr17_+_78075368	881	+	TSC_hg19_v1_chr17_+_78075395 BC040431 BC065262 Y00839	987	+	NM_001243342|CCDC40|55036|coiled-coil domain containing 40##NM_017950|CCDC40|55036|coiled-coil domain containing 40##BC035251|CCDC40|55036|coiled-coil domain containing 40##AK000760|CCDC40|55036|coiled-coil domain containing 40##BC058288|CCDC40|55036|coiled-coil domain containing 40##BC028290|TBC1D16|125058|TBC1 domain family, member 16##NM_019020|TBC1D16|125058|TBC1 domain family, member 16##NM_000152|GAA|2548|glucosidase, alpha; acid##NM_001079803|GAA|2548|glucosidase, alpha; acid##NM_001079804|GAA|2548|glucosidase, alpha; acid##AK299462|GAA|2548|glucosidase, alpha; acid##BC040431|GAA|2548|glucosidase, alpha; acid##Y00839|GAA|2548|glucosidase, alpha; acid	0.991307	0.0	denovo_WM_7:14:0.509	denovo_WM_7:15:0.329
chr21	16106641	16106777	reg1006272.p2	6.565	+	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	-188060	-	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-351236	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-518212	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	330508	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	995616	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	995832	+	BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25	0.987836	0.0	denovo_WM_7:-11:0.423	denovo_WM_7:-12:0.474
chr4	15471390	15471541	reg1005953.p2	6.565	+	NM_031911 AF329839	-41818	+	NM_001135171	-95291	+	BX647781 NM_001135170 AK314802 BC022187 BC024015	-129880	+	NM_001080522 NM_001164720 NM_020785 AK096047 AK309178 BX647334 BC061921 BC053865 BC070395 EU450799	109	+	TSC_hg19_v1_chr4_+_15480833 AB037766 BC103710	9384	+	AF157323 AM392665 AM393475 CU688970 DQ892452 DQ895664 AF176700 AF199420 TSC_hg19_v1_chr4_-_15656935	185450	-	NM_031911|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##AF329839|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001135171|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BX647781|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001135170|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##AK314802|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BC022187|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BC024015|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001080522|CC2D2A|57545|coiled-coil and C2 domain containing 2A##NM_001164720|CC2D2A|57545|coiled-coil and C2 domain containing 2A##NM_020785|CC2D2A|57545|coiled-coil and C2 domain containing 2A##AK096047|CC2D2A|57545|coiled-coil and C2 domain containing 2A##AK309178|CC2D2A|57545|coiled-coil and C2 domain containing 2A##BX647334|CC2D2A|57545|coiled-coil and C2 domain containing 2A##BC061921|CC2D2A|57545|coiled-coil and C2 domain containing 2A##BC053865|CC2D2A|57545|coiled-coil and C2 domain containing 2A##BC070395|CC2D2A|57545|coiled-coil and C2 domain containing 2A##EU450799|CC2D2A|57545|coiled-coil and C2 domain containing 2A##AB037766|CC2D2A|57545|coiled-coil and C2 domain containing 2A##BC103710|CC2D2A|57545|coiled-coil and C2 domain containing 2A##AF157323|FBXL5|26234|F-box and leucine-rich repeat protein 5##AM392665|FBXL5|26234|F-box and leucine-rich repeat protein 5##AM393475|FBXL5|26234|F-box and leucine-rich repeat protein 5##DQ892452|FBXL5|26234|F-box and leucine-rich repeat protein 5##DQ895664|FBXL5|26234|F-box and leucine-rich repeat protein 5##AF176700|FBXL5|26234|F-box and leucine-rich repeat protein 5##AF199420|FBXL5|26234|F-box and leucine-rich repeat protein 5	0.987334	0.0	denovo_WM_7:-1:0.729
chr7	20190638	20190774	reg1006702.p2	6.564	+	BX648384 NM_152774	-378303	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-442060	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-1005693	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	66274	-	AK295044 TSC_hg19_v1_chr7_+_20370337	179631	+	BC002630 NM_002214 M73780	180028	+	BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8	0.98364	0.0	denovo_WM_7:-19:0.429	denovo_WM_7:-20:0.429
chr13	40621584	40621758	reg1006517.p2	6.563	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-391810	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-444309	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-444344	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	619041	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	723621	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	723661	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.0	0.0	
chr2	65209655	65209819	reg1006522.p2	6.563	+	TSC_hg19_v1_chr2_-_65159574 BC037562	-50160	-	TSC_hg19_v1_chr2_-_65090764 AK097952	-118996	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-328690	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	5863	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	6754	+	TSC_hg19_v1_chr2_+_65216532 AK223486 AK313052 BC072423 BC026216 L14595 L19444 AB026689 DQ891127 DQ894306	6913	+	BC037562|LOC400958|400958|uncharacterized LOC400958##D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK223486|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK313052|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC072423|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC026216|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L14595|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L19444|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB026689|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ891127|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ894306|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.873773	0.0	denovo_WM_7:10:0.546
chr3	155761701	155761851	reg1006505.p1	6.563	+	TSC_hg19_v1_chr3_+_155588481 AK315832 U10860 DQ896621 EU176462	-173207	+	TSC_hg19_v1_chr3_+_155588447 AK291504 BC012178	-173321	+	TSC_hg19_v1_chr3_+_155588438 AK302148 AK223399 AK300787	-173342	+	NM_172160 L47665 AK292693 AK303287	76575	+	NM_003471 AK292999 L39833 U16953 U17968	99086	+	NM_172159 BC043166 AK127240	247034	+	AK315832|GMPS|8833|guanine monphosphate synthetase##U10860|GMPS|8833|guanine monphosphate synthetase##DQ896621|GMPS|8833|guanine monphosphate synthetase##EU176462|GMPS|8833|guanine monphosphate synthetase##AK291504|GMPS|8833|guanine monphosphate synthetase##BC012178|GMPS|8833|guanine monphosphate synthetase##AK302148|GMPS|8833|guanine monphosphate synthetase##AK223399|GMPS|8833|guanine monphosphate synthetase##AK300787|GMPS|8833|guanine monphosphate synthetase##NM_172160|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##L47665|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK292693|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK303287|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_003471|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK292999|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##L39833|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##U16953|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##U17968|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1	0.991922	0.215313	denovo_WM_7:-7:0.496	CTCF.p2:72:0.215
chr5	142600913	142601043	reg1005728.p1	6.563	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-450670	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-451006	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-523407	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	181845	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	182128	-	BC015610 TSC_hg19_v1_chr5_-_142783214	182233	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.997518	0.0	
chr8	33356116	33356281	reg1006797.p2	6.563	+	NM_032509 TSC_hg19_v1_chr8_+_33342703 AK314491 AK225476 AK027469 BC015965 AF251062 BC039740 BC028230 BC050528 CU690708	-13494	+	AK098505 AK297132 TSC_hg19_v1_chr8_-_33330636 AK303231 AJ512465 AJ535838 AJ535839 AK292993 AJ582015 NM_032664	-25552	-	TSC_hg19_v1_chr8_-_33330616 BC004884	-25585	-	AK026916 TSC_hg19_v1_chr8_-_33370644 BX648410 BC007387 BC066935 NM_025115 NM_001102401	14429	-	AK022588 NM_024787 TSC_hg19_v1_chr8_-_33424647	68465	-	TSC_hg19_v1_chr8_-_33457295 BC067804	101089	-	NM_032509|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK314491|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK225476|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK027469|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC015965|MAK16|84549|MAK16 homolog (S. cerevisiae)##AF251062|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC039740|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC028230|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC050528|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK098505|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK297132|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK303231|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ512465|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535838|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535839|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK292993|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ582015|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##NM_032664|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##BC004884|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK026916|TTI2|80185|TELO2 interacting protein 2##BX648410|TTI2|80185|TELO2 interacting protein 2##BC007387|TTI2|80185|TELO2 interacting protein 2##BC066935|TTI2|80185|TELO2 interacting protein 2##NM_025115|TTI2|80185|TELO2 interacting protein 2##NM_001102401|TTI2|80185|TELO2 interacting protein 2##AK022588|RNF122|79845|ring finger protein 122##NM_024787|RNF122|79845|ring finger protein 122##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)	0.984673	0.0	denovo_WM_7:0:0.455	denovo_WM_7:1:0.455
chr9	21789811	21789937	reg1004998.p2	6.563	+	AK124391 TSC_hg19_v1_chr9_-_21559834	-230092	-	AY358570 NM_176891	-307563	-	NM_024013 V00538 V00537 BC112300 BC112302 BC074928 BC074929 AB464595 CU686802 HQ258738 JN848523	-349395	+	TSC_hg19_v1_chr9_+_21802647 AF109294 AY712791 NM_002451 U22233 L40432 AK300592 AK309365	12766	+	BC026106 TSC_hg19_v1_chr9_+_21802660 BC012316 BC018625	12790	+	TSC_hg19_v1_chr9_+_21802691 CU693136 CR541670 CR541710	12843	+	AK124391|MIR31HG|554202|MIR31 host gene (non-protein coding)##AY358570|IFNE|338376|interferon, epsilon##NM_176891|IFNE|338376|interferon, epsilon##NM_024013|IFNA1|3439|interferon, alpha 1##V00538|IFNA1|3439|interferon, alpha 1##V00537|IFNA1|3439|interferon, alpha 1##BC112300|IFNA1|3439|interferon, alpha 1##BC112302|IFNA1|3439|interferon, alpha 1##BC074928|IFNA1|3439|interferon, alpha 1##BC074929|IFNA1|3439|interferon, alpha 1##HQ258738|IFNA1|3439|interferon, alpha 1##AF109294|MTAP|4507|methylthioadenosine phosphorylase##AY712791|MTAP|4507|methylthioadenosine phosphorylase##NM_002451|MTAP|4507|methylthioadenosine phosphorylase##U22233|MTAP|4507|methylthioadenosine phosphorylase##L40432|MTAP|4507|methylthioadenosine phosphorylase##AK300592|MTAP|4507|methylthioadenosine phosphorylase##AK309365|MTAP|4507|methylthioadenosine phosphorylase##BC026106|MTAP|4507|methylthioadenosine phosphorylase##BC012316|MTAP|4507|methylthioadenosine phosphorylase##BC018625|MTAP|4507|methylthioadenosine phosphorylase##CR541670|MTAP|4507|methylthioadenosine phosphorylase##CR541710|MTAP|4507|methylthioadenosine phosphorylase	0.999085	0.892419	CTCF.p2:6:0.892	denovo_WM_7:-18:0.394	denovo_WM_7:-23:0.203
chr10	21868376	21868498	reg1006537.p2	6.561	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-44812	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-45043	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-45161	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	424012	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	424228	-	NM_001199938	630474	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	1.976492	0.0	denovo_WM_7:12:0.987	denovo_WM_7:64:0.820
chr5	14220042	14220203	reg1005443.p1	6.561	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-76450	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-208252	-	AX800026 AY045575 NM_001369	-275534	-	TSC_hg19_v1_chr5_+_14488527 AK131423	268417	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	361778	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	361842	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	2.900831	0.0	denovo_WM_7:15:0.876	denovo_WM_7:-31:0.975	denovo_WM_7:43:0.718
chr16	88077973	88078116	reg1006262.p2	6.560	+	AK094158 NM_001173543	-74421	+	AK315535 NM_001173542	-84568	+	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	-92876	+	NM_001127464	415834	+	TSC_hg19_v1_chr16_+_88519687 AF488691	441661	+	TSC_hg19_v1_chr16_+_88519921 NM_153813	441921	+	AK094158|BANP|54971|BTG3 associated nuclear protein##NM_001173543|BANP|54971|BTG3 associated nuclear protein##AK315535|BANP|54971|BTG3 associated nuclear protein##NM_001173542|BANP|54971|BTG3 associated nuclear protein##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein##NM_001127464|ZNF469|84627|zinc finger protein 469##AF488691|ZFPM1|161882|zinc finger protein, multitype 1##NM_153813|ZFPM1|161882|zinc finger protein, multitype 1	0.194784	0.0	
chr9	130150712	130150890	reg1001528.p2	6.560	+	NM_032293 AK293732 AK095679	-123994	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-265771	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-265839	-	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	8645	+	TSC_hg19_v1_chr9_-_130186602 AK124330	35765	-	NM_007135 TSC_hg19_v1_chr9_+_130186700 AK054606 BC062309 AK302284	35880	+	NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_007135|ZNF79|7633|zinc finger protein 79##AK054606|ZNF79|7633|zinc finger protein 79##BC062309|ZNF79|7633|zinc finger protein 79##AK302284|ZNF79|7633|zinc finger protein 79	0.0	0.0	
chr16	50186643	50186823	reg1005002.p2	6.559	+	TSC_hg19_v1_chr16_+_50099915 AK289949 BC018730 BC033077	-86773	+	NM_182922 TSC_hg19_v1_chr16_+_50099906 AF462442 AK000725 BC014415	-86840	+	TSC_hg19_v1_chr16_+_50059172 AK095420 AK301610 BC022550 CR933600 AK307309 BC036683 FJ516381 NM_153261	-127593	+	TSC_hg19_v1_chr16_+_50186838 AK300918 NM_001040284 NM_001040285	102	+	AK093706 TSC_hg19_v1_chr16_+_50300480 BC028085	113743	+	TSC_hg19_v1_chr16_+_50308041 BC039891	121320	+	AK289949|HEATR3|55027|HEAT repeat containing 3##BC018730|HEATR3|55027|HEAT repeat containing 3##BC033077|HEATR3|55027|HEAT repeat containing 3##NM_182922|HEATR3|55027|HEAT repeat containing 3##AF462442|HEATR3|55027|HEAT repeat containing 3##AK000725|HEATR3|55027|HEAT repeat containing 3##BC014415|HEATR3|55027|HEAT repeat containing 3##AK095420|TMEM188|255919|transmembrane protein 188##AK301610|TMEM188|255919|transmembrane protein 188##BC022550|TMEM188|255919|transmembrane protein 188##CR933600|TMEM188|255919|transmembrane protein 188##AK307309|TMEM188|255919|transmembrane protein 188##BC036683|TMEM188|255919|transmembrane protein 188##FJ516381|TMEM188|255919|transmembrane protein 188##NM_153261|TMEM188|255919|transmembrane protein 188##AK300918|PAPD5|64282|PAP associated domain containing 5##NM_001040284|PAPD5|64282|PAP associated domain containing 5##NM_001040285|PAPD5|64282|PAP associated domain containing 5##AK093706|ADCY7|113|adenylate cyclase 7##BC039891|ADCY7|113|adenylate cyclase 7	0.996558	0.0	
chr17	36852461	36852596	reg1006260.p1	6.559	+	TSC_hg19_v1_chr17_-_36831211 NM_001130677	-21343	-	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	-90332	-	BC029278 TSC_hg19_v1_chr17_-_36760969	-91590	-	TSC_hg19_v1_chr17_+_36861421 BC064612	9071	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	9362	+	TSC_hg19_v1_chr17_+_36886574 NM_001136498 AK097047 BC062294	34104	+	NM_001130677|C17orf96|100170841|chromosome 17 open reading frame 96##AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_001136498|CISD3|284106|CDGSH iron sulfur domain 3##AK097047|CISD3|284106|CDGSH iron sulfur domain 3##BC062294|CISD3|284106|CDGSH iron sulfur domain 3	1.988665	0.0	denovo_WM_7:51:0.931	denovo_WM_7:66:0.954
chr6	27447512	27447578	reg1005034.p1	6.559	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-6844	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-90990	+	AF352327 AF336874 BC107050 NM_032030	-154987	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	328178	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	328396	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	330237	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.028036	0.0	
chr7	98468116	98468272	reg1005185.p2	6.559	+	TSC_hg19_v1_chr7_-_98467663 NM_001134450 NM_001134451 NM_152913 AY358583	-518	-	AK225783 AK295543 BC030793 TSC_hg19_v1_chr7_-_98467638	-567	-	AM392947 AM393244 AM393838 AM393874 AB528254 AL834349 AL834348 AK312364 TSC_hg19_v1_chr7_-_98467565 BC037895	-664	-	TSC_hg19_v1_chr7_+_98476154 AF076974 NM_001244580 NM_003496 AF110377	7956	+	AF199364 AB385491 AF464850 TSC_hg19_v1_chr7_-_98741471	273229	-	TSC_hg19_v1_chr7_-_98741637 BC136804 BC144414	273436	-	NM_001134450|TMEM130|222865|transmembrane protein 130##NM_001134451|TMEM130|222865|transmembrane protein 130##NM_152913|TMEM130|222865|transmembrane protein 130##AY358583|TMEM130|222865|transmembrane protein 130##AK225783|TMEM130|222865|transmembrane protein 130##AK295543|TMEM130|222865|transmembrane protein 130##BC030793|TMEM130|222865|transmembrane protein 130##AM392947|TMEM130|222865|transmembrane protein 130##AM393244|TMEM130|222865|transmembrane protein 130##AM393838|TMEM130|222865|transmembrane protein 130##AM393874|TMEM130|222865|transmembrane protein 130##AL834349|TMEM130|222865|transmembrane protein 130##AL834348|TMEM130|222865|transmembrane protein 130##AK312364|TMEM130|222865|transmembrane protein 130##BC037895|TMEM130|222865|transmembrane protein 130##AF076974|TRRAP|8295|transformation/transcription domain-associated protein##NM_001244580|TRRAP|8295|transformation/transcription domain-associated protein##NM_003496|TRRAP|8295|transformation/transcription domain-associated protein##AF110377|TRRAP|8295|transformation/transcription domain-associated protein##AF199364|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##AF464850|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC136804|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC144414|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1	0.997962	0.0	denovo_WM_7:41:0.409	denovo_WM_7:42:0.409
chr1	23658308	23658474	reg1006694.p2	6.558	+	BC007720 NM_000864	-137170	-	TSC_hg19_v1_chr1_-_23504281 AK093016 AX747858	-154105	-	TSC_hg19_v1_chr1_-_23495350 NM_001142546 NM_033631	-163041	-	TSC_hg19_v1_chr1_-_23670794 BX647784 AF000364 AK297405 AK311519 AK297382 BC110389 AK300029 BX640912 BC001449 AK313142 NM_001102397 NM_001102398 NM_001102399 NM_005826	12427	-	CU691148 EU446536 TSC_hg19_v1_chr1_-_23694804 AK308173 BC056400 AK092364 AX747503 AL834485 NM_030634	36307	-	TSC_hg19_v1_chr1_+_23695456 BC054115 BC068594 AK074989	37104	+	BC007720|HTR1D|3352|5-hydroxytryptamine (serotonin) receptor 1D##NM_000864|HTR1D|3352|5-hydroxytryptamine (serotonin) receptor 1D##AK093016|LUZP1|7798|leucine zipper protein 1##NM_001142546|LUZP1|7798|leucine zipper protein 1##NM_033631|LUZP1|7798|leucine zipper protein 1##BX647784|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AF000364|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK297405|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK311519|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK297382|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC110389|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK300029|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BX640912|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##BC001449|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##AK313142|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102397|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102398|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_001102399|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##NM_005826|HNRNPR|10236|heterogeneous nuclear ribonucleoprotein R##EU446536|ZNF436|80818|zinc finger protein 436##AK308173|ZNF436|80818|zinc finger protein 436##BC056400|ZNF436|80818|zinc finger protein 436##AK092364|ZNF436|80818|zinc finger protein 436##AL834485|ZNF436|80818|zinc finger protein 436##NM_030634|ZNF436|80818|zinc finger protein 436##BC054115|C1orf213|148898|chromosome 1 open reading frame 213##BC068594|C1orf213|148898|chromosome 1 open reading frame 213##AK074989|C1orf213|148898|chromosome 1 open reading frame 213	1.98065	0.0	denovo_WM_7:-41:0.787	denovo_WM_7:-56:0.814
chr9	114731509	114731677	reg1006367.p1	6.558	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-72126	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-72479	+	AL833535 NM_173521	-185818	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	205927	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	363694	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	364256	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.0	0.0	
chr17	60531059	60531200	reg1006067.p1	6.557	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	-29866	+	AK098684 NM_173503 BC101752 BC101778	-73203	+	NM_001144933	-83551	+	TSC_hg19_v1_chr17_+_60556483 NM_001112707 NM_006852 BC044925 AF162667 AX775745 AX775747	25466	+	TSC_hg19_v1_chr17_+_60704751 AB014609 BC153884 NM_006039	173628	+	BC146647 TSC_hg19_v1_chr17_+_60705048 AF134838	173916	+	NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##NM_001112707|TLK2|11011|tousled-like kinase 2##NM_006852|TLK2|11011|tousled-like kinase 2##BC044925|TLK2|11011|tousled-like kinase 2##AF162667|TLK2|11011|tousled-like kinase 2##AB014609|MRC2|9902|mannose receptor, C type 2##BC153884|MRC2|9902|mannose receptor, C type 2##NM_006039|MRC2|9902|mannose receptor, C type 2##BC146647|MRC2|9902|mannose receptor, C type 2##AF134838|MRC2|9902|mannose receptor, C type 2	0.994741	0.0	denovo_WM_7:-42:0.309	denovo_WM_7:-43:0.309	denovo_WM_7:-44:0.309
chr20	50267479	50267583	reg1005083.p1	6.557	+	AK304147 AK226146 EU887575 EU887579 TSC_hg19_v1_chr20_-_50179379	-88147	-	EU887574 EU887577 NM_001136021	-88364	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	-108256	-	BC110591 BC110592 BC063701 TSC_hg19_v1_chr20_-_50314160	46547	-	TSC_hg19_v1_chr20_-_50384875 AB385363 AB014511 AK299064	117347	-	TSC_hg19_v1_chr20_-_50384925 NM_006045	117397	-	AK304147|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##AK226146|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887575|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887579|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC110591|ATP9A|10079|ATPase, class II, type 9A##BC110592|ATP9A|10079|ATPase, class II, type 9A##BC063701|ATP9A|10079|ATPase, class II, type 9A##AB014511|ATP9A|10079|ATPase, class II, type 9A##AK299064|ATP9A|10079|ATPase, class II, type 9A##NM_006045|ATP9A|10079|ATPase, class II, type 9A	0.196849	0.0	
chr12	122998697	122998825	reg1006691.p1	6.556	+	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	-13243	-	TSC_hg19_v1_chr12_-_122985404 BC065918	-13334	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	-91524	-	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	12747	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	13043	+	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	189111	-	AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2	0.956817	0.0	denovo_WM_7:61:0.762
chr15	59294706	59294846	reg1007774.p1	6.556	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-14497	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-14919	+	TSC_hg19_v1_chr15_-_59225851 BC140851 NM_001013843 NM_024755	-68945	-	TSC_hg19_v1_chr15_+_59359061 AK095327	64302	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	102595	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	204276	+	BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##BC140851|SLTM|79811|SAFB-like, transcription modulator##NM_001013843|SLTM|79811|SAFB-like, transcription modulator##NM_024755|SLTM|79811|SAFB-like, transcription modulator##AK095327|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B	0.987373	0.0	denovo_WM_7:-13:0.531	denovo_WM_7:-14:0.456
chr6	15023699	15023879	reg1003335.p3	6.556	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-905767	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-905884	+	NM_001251901	-906303	+	TSC_hg19_v1_chr6_+_15245702 AK302624	221928	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	222623	+	BC033996 TSC_hg19_v1_chr6_-_15248900	225112	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	0.0	0.0	
chr8	22300985	22301151	reg1006186.p1	6.556	+	TSC_hg19_v1_chr8_+_22298813 AY007249 AB385002 CU678778	-2224	+	TSC_hg19_v1_chr8_+_22298590 BC004864 S46622 AK299415	-2431	+	AK055013 TSC_hg19_v1_chr8_+_22298511 NM_001243974 NM_001243975 NM_005605	-2622	+	TSC_hg19_v1_chr8_+_22409237 BC091514 NM_005775	108170	+	TSC_hg19_v1_chr8_+_22409439 AK303950 AF037261 BC067260	108385	+	TSC_hg19_v1_chr8_+_22423258 NM_001018003 AF064807 BC010146	122169	+	AY007249|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##BC004864|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##S46622|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##AK299415|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##AK055013|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_001243974|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_001243975|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_005605|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##BC091514|SORBS3|10174|sorbin and SH3 domain containing 3##NM_005775|SORBS3|10174|sorbin and SH3 domain containing 3##AK303950|SORBS3|10174|sorbin and SH3 domain containing 3##AF037261|SORBS3|10174|sorbin and SH3 domain containing 3##BC067260|SORBS3|10174|sorbin and SH3 domain containing 3##NM_001018003|SORBS3|10174|sorbin and SH3 domain containing 3##AF064807|SORBS3|10174|sorbin and SH3 domain containing 3##BC010146|SORBS3|10174|sorbin and SH3 domain containing 3	0.999931	0.0	
chr10	6600310	6600433	reg1006301.p1	6.555	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-355495	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-413459	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-413487	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	21890	-	TSC_hg19_v1_chr10_+_6622460 AY007155	22109	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	850879	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.799549	0.0	denovo_WM_7:-28:0.719
chr15	64235223	64235391	reg1005766.p1	6.555	+	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	-109167	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	-109187	-	TSC_hg19_v1_chr15_-_64126081 U50078	-109223	-	AB018001 AF052941 GU056176 NM_014326 TSC_hg19_v1_chr15_-_64338641 AK310967	103303	-	TSC_hg19_v1_chr15_-_64386038 AK304202 AK026528 BC008865 AK312171 NM_001014812 NM_032231	150790	-	NM_001242933 NM_003099 NM_148955 TSC_hg19_v1_chr15_+_64388198 AB209013 AK128179 AK222561 AK291752	152833	+	AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AB018001|DAPK2|23604|death-associated protein kinase 2##AF052941|DAPK2|23604|death-associated protein kinase 2##GU056176|DAPK2|23604|death-associated protein kinase 2##NM_014326|DAPK2|23604|death-associated protein kinase 2##AK310967|DAPK2|23604|death-associated protein kinase 2##AK304202|FAM96A|84191|family with sequence similarity 96, member A##BC008865|FAM96A|84191|family with sequence similarity 96, member A##AK312171|FAM96A|84191|family with sequence similarity 96, member A##NM_001014812|FAM96A|84191|family with sequence similarity 96, member A##NM_032231|FAM96A|84191|family with sequence similarity 96, member A##NM_001242933|SNX1|6642|sorting nexin 1##NM_003099|SNX1|6642|sorting nexin 1##NM_148955|SNX1|6642|sorting nexin 1##AB209013|SNX1|6642|sorting nexin 1##AK128179|SNX1|6642|sorting nexin 1##AK222561|SNX1|6642|sorting nexin 1##AK291752|SNX1|6642|sorting nexin 1	0.986093	0.0	denovo_WM_7:13:0.877
chr2	13670507	13670660	reg1007872.p1	6.555	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-812186	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-812667	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-813330	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1102238	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1102268	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2030846	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	0.995928	0.0	
chr8	98596831	98596972	reg1005765.p1	6.555	+	TSC_hg19_v1_chr8_-_98290193 AK091445 AX746987	-306682	-	TSC_hg19_v1_chr8_-_98290171 BC045630 NM_033512	-306728	-	CU692280 AB384285 AB051537 TSC_hg19_v1_chr8_-_98290135	-306793	-	TSC_hg19_v1_chr8_+_98656416 BC045642 NM_178812 BC001815	59476	+	TSC_hg19_v1_chr8_+_98656437 BC014977 AF501310	59558	+	BC022825 TSC_hg19_v1_chr8_+_98656510 BC009324 AF411226 AY082966 AY974040	59712	+	AK091445|TSPYL5|85453|TSPY-like 5##BC045630|TSPYL5|85453|TSPY-like 5##NM_033512|TSPYL5|85453|TSPY-like 5##AB051537|TSPYL5|85453|TSPY-like 5##BC045642|MTDH|92140|metadherin##NM_178812|MTDH|92140|metadherin##BC001815|MTDH|92140|metadherin##BC014977|MTDH|92140|metadherin##AF501310|MTDH|92140|metadherin##BC022825|MTDH|92140|metadherin##BC009324|MTDH|92140|metadherin##AF411226|MTDH|92140|metadherin##AY082966|MTDH|92140|metadherin##AY974040|MTDH|92140|metadherin	0.996471	0.0	
chr21	35310422	35310566	reg1005474.p1	6.554	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-22402	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-119824	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-295639	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	135347	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	135435	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	425852	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.998832	0.0	
chr5	126922202	126922327	reg1005549.p1	6.554	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-63070	+	NM_130809 TSC_hg19_v1_chr5_+_126853331 AL831963 AL832056 AL832600 AJ427339 AJ441110 AJ496322 AJ515158 AJ515428 AJ515429 AK057437 BC017066	-68913	+	NM_032446 CR749437 AK307919 BC020198 AB058676 BC152478	-295730	+	NM_001048252 AB219764	62459	+	NM_001127385 AB219832 BC071790	66461	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	496499	-	AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##NM_130809|PRRC1|133619|proline-rich coiled-coil 1##AL831963|PRRC1|133619|proline-rich coiled-coil 1##AL832056|PRRC1|133619|proline-rich coiled-coil 1##AL832600|PRRC1|133619|proline-rich coiled-coil 1##AJ427339|PRRC1|133619|proline-rich coiled-coil 1##AJ441110|PRRC1|133619|proline-rich coiled-coil 1##AJ496322|PRRC1|133619|proline-rich coiled-coil 1##AJ515158|PRRC1|133619|proline-rich coiled-coil 1##AJ515428|PRRC1|133619|proline-rich coiled-coil 1##AJ515429|PRRC1|133619|proline-rich coiled-coil 1##AK057437|PRRC1|133619|proline-rich coiled-coil 1##BC017066|PRRC1|133619|proline-rich coiled-coil 1##NM_032446|MEGF10|84466|multiple EGF-like-domains 10##CR749437|MEGF10|84466|multiple EGF-like-domains 10##AK307919|MEGF10|84466|multiple EGF-like-domains 10##BC020198|MEGF10|84466|multiple EGF-like-domains 10##AB058676|MEGF10|84466|multiple EGF-like-domains 10##BC152478|MEGF10|84466|multiple EGF-like-domains 10##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873	0.0	0.0	
chr10	3790553	3790732	reg1006524.p2	6.552	+	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-575637	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	-575672	-	BC045577 TSC_hg19_v1_chr10_-_3214936	-575717	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	36669	-	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	36867	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1077776	+	BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2	3.210225	0.0	denovo_WM_7:-26:0.767	denovo_WM_7:-63:0.271
chr18	5059769	5059884	reg1005235.p2	6.552	+	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	-604556	-	AK304101 TSC_hg19_v1_chr18_-_4455255	-604573	-	AK294777 AK294717 NM_001242762 NM_001242763	-1185099	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	137426	-	TSC_hg19_v1_chr18_+_5238098 AK056929 BC041875	178277	+	TSC_hg19_v1_chr18_-_5295610 NM_001243702	235827	-	AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42##NM_001243702|ZFP161|7541|zinc finger protein 161 homolog (mouse)	1.970547	0.0	denovo_WM_7:-48:0.747	denovo_WM_7:-63:0.778
chr4	186178311	186178429	reg1005409.p2	6.552	+	NM_031953	-47087	+	TSC_hg19_v1_chr4_-_186125137 AK091993 BC020772 BC030535 NM_020827	-53226	-	NM_001151 TSC_hg19_v1_chr4_+_186064419 J02966 AK291902 BC063643 BC008664 AB209764 BC061589 J03593 DQ891547 DQ894735 AB464231	-113900	+	AB037746 BC152444 NM_018409 AL161975	121791	-	TSC_hg19_v1_chr4_+_186317840 AY296056 NM_181726	139469	+	TSC_hg19_v1_chr4_+_186317892 BC088376	139525	+	NM_031953|SNX25|83891|sorting nexin 25##AK091993|KIAA1430|57587|KIAA1430##BC020772|KIAA1430|57587|KIAA1430##BC030535|KIAA1430|57587|KIAA1430##NM_020827|KIAA1430|57587|KIAA1430##NM_001151|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J02966|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK291902|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC063643|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC008664|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB209764|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC061589|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J03593|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ891547|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ894735|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB037746|LRP2BP|55805|LRP2 binding protein##BC152444|LRP2BP|55805|LRP2 binding protein##NM_018409|LRP2BP|55805|LRP2 binding protein##AL161975|LRP2BP|55805|LRP2 binding protein##AY296056|ANKRD37|353322|ankyrin repeat domain 37##NM_181726|ANKRD37|353322|ankyrin repeat domain 37##BC088376|ANKRD37|353322|ankyrin repeat domain 37	0.996943	0.0	
chr14	51204038	51204213	reg1007055.p2	6.551	+	TSC_hg19_v1_chr14_-_51135048 AK225896 AK095903	-69057	-	BC020537 TSC_hg19_v1_chr14_-_51135025 BC006385 NM_021818 AK021500	-69099	-	AJ292969 AK023071 TSC_hg19_v1_chr14_-_51135016 AK290883	-69185	-	AB046785 TSC_hg19_v1_chr14_-_51297860 BC065521 AF223937 AF223938 AF223939 AF302773 AY736182 NM_016350 NM_020921 NM_182944 NM_182946	93695	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	134753	+	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	207057	-	AK225896|SAV1|60485|salvador homolog 1 (Drosophila)##AK095903|SAV1|60485|salvador homolog 1 (Drosophila)##BC020537|SAV1|60485|salvador homolog 1 (Drosophila)##BC006385|SAV1|60485|salvador homolog 1 (Drosophila)##NM_021818|SAV1|60485|salvador homolog 1 (Drosophila)##AK021500|SAV1|60485|salvador homolog 1 (Drosophila)##AJ292969|SAV1|60485|salvador homolog 1 (Drosophila)##AK023071|SAV1|60485|salvador homolog 1 (Drosophila)##AK290883|SAV1|60485|salvador homolog 1 (Drosophila)##AB046785|NIN|51199|ninein (GSK3B interacting protein)##BC065521|NIN|51199|ninein (GSK3B interacting protein)##AF223937|NIN|51199|ninein (GSK3B interacting protein)##AF223938|NIN|51199|ninein (GSK3B interacting protein)##AF223939|NIN|51199|ninein (GSK3B interacting protein)##AF302773|NIN|51199|ninein (GSK3B interacting protein)##AY736182|NIN|51199|ninein (GSK3B interacting protein)##NM_016350|NIN|51199|ninein (GSK3B interacting protein)##NM_020921|NIN|51199|ninein (GSK3B interacting protein)##NM_182944|NIN|51199|ninein (GSK3B interacting protein)##NM_182946|NIN|51199|ninein (GSK3B interacting protein)##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver	1.075967	0.0	
chr5	17343977	17344085	reg1005406.p2	6.551	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-126191	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-126419	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-407646	-	AK295087 BC031051 NM_001167667 NM_004934	2644291	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4115578	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4115617	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.0	0.0	
chr19	8259886	8260066	reg1001811.p5	6.550	+	AB384635 AB053450 BC153882 NM_032447	-47601	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-142029	+	AK292662 NM_001201359 NM_005624	-142331	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	14272	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	113233	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	126281	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.0	0.0	
chr10	70074220	70074363	reg1007657.p1	6.549	+	AK312275 AB528615 TSC_hg19_v1_chr10_-_70066624 AK092826 AX747753	-7677	-	BC032621 NM_145178 AB593108 AB593109	-82430	-	NM_032578 TSC_hg19_v1_chr10_+_69869249 AK027343 BX647637 AL832002 AL834247 BC142609 BC144333 BC144334	-204953	+	NM_012207 NM_021644 AK223441 AK291547 TSC_hg19_v1_chr10_+_70091820 BC039824 AX810704 AK295316 AF132361	17531	+	AK027673 BC009738 NM_001033083 NM_022129	18374	-	TSC_hg19_v1_chr10_-_70167035 AK127019 NM_017987 BC062660 AY528716 BC041092 AK000925 AK294211 NM_001042417	92694	-	AK312275|PBLD|64081|phenazine biosynthesis-like protein domain containing##AK092826|PBLD|64081|phenazine biosynthesis-like protein domain containing##BC032621|ATOH7|220202|atonal homolog 7 (Drosophila)##NM_145178|ATOH7|220202|atonal homolog 7 (Drosophila)##AB593108|ATOH7|220202|atonal homolog 7 (Drosophila)##AB593109|ATOH7|220202|atonal homolog 7 (Drosophila)##NM_032578|MYPN|84665|myopalladin##AK027343|MYPN|84665|myopalladin##BX647637|MYPN|84665|myopalladin##AL832002|MYPN|84665|myopalladin##AL834247|MYPN|84665|myopalladin##BC142609|MYPN|84665|myopalladin##BC144333|MYPN|84665|myopalladin##BC144334|MYPN|84665|myopalladin##NM_012207|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##NM_021644|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK223441|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK291547|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##BC039824|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK295316|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AF132361|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK027673|PBLD|64081|phenazine biosynthesis-like protein domain containing##BC009738|PBLD|64081|phenazine biosynthesis-like protein domain containing##NM_001033083|PBLD|64081|phenazine biosynthesis-like protein domain containing##NM_022129|PBLD|64081|phenazine biosynthesis-like protein domain containing##AK127019|RUFY2|55680|RUN and FYVE domain containing 2##NM_017987|RUFY2|55680|RUN and FYVE domain containing 2##BC062660|RUFY2|55680|RUN and FYVE domain containing 2##AY528716|RUFY2|55680|RUN and FYVE domain containing 2##BC041092|RUFY2|55680|RUN and FYVE domain containing 2##AK294211|RUFY2|55680|RUN and FYVE domain containing 2##NM_001042417|RUFY2|55680|RUN and FYVE domain containing 2	0.998609	0.0	denovo_WM_7:70:0.315	denovo_WM_7:72:0.541
chr7	5405972	5406088	reg1001105.p2	6.549	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	-83424	+	BC016912 AF151808 NM_001033520 AY691426	-152138	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-176045	+	TSC_hg19_v1_chr7_-_5460842 BC140723	54876	-	AY129022 TSC_hg19_v1_chr7_-_5461555	55511	-	NM_001080495	57146	-	AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY129022|TNRC18|84629|trinucleotide repeat containing 18##NM_001080495|TNRC18|84629|trinucleotide repeat containing 18	1.645229	0.0	denovo_WM_7:-59:0.278	denovo_WM_7:-74:0.280	denovo_WM_7:98:0.334
chr12	39667073	39667187	reg1006415.p1	6.548	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-367747	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-956505	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5491657	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	169869	-	AK314254 NM_005164	346712	-	BC038754 NM_001031748 BC048120 AK097445	352865	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	0.99772	0.998643	denovo_WM_7:-17:0.932	CTCF.p2:44:0.999
chr19	19774726	19774850	reg1005172.p2	6.548	+	TSC_hg19_v1_chr19_-_19774501 NM_020410	-279	-	AB058728 AB385506 TSC_hg19_v1_chr19_-_19774486 AK056420	-304	-	TSC_hg19_v1_chr19_-_19754452 NM_016573	-20333	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	4869	+	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	69059	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	112417	-	NM_020410|ATP13A1|57130|ATPase type 13A1##AB058728|ATP13A1|57130|ATPase type 13A1##AK056420|ATP13A1|57130|ATPase type 13A1##NM_016573|GMIP|51291|GEM interacting protein##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440	0.0	0.0	
chr4	110955290	110955470	reg1005608.p1	6.548	+	AK299306 NM_001178130 NM_001178131 NM_001963 X04571	-121333	+	AK126648 NM_198506	-182895	+	NM_006583 BC128120 BC128121 BC128401	-206227	+	TSC_hg19_v1_chr4_-_111119772 BC001305 AK027031 NM_001130721 NM_024090	164405	-	TSC_hg19_v1_chr4_+_111397181 AM888273 AM888274 AM888275 AM888276 AM888277 AM888278 AM888279 AM888280 AM888281 AM888282 AM888283 NM_001977 BC094770 L12468 BX641012 L14721 AK313412	441993	+	AK313987 TSC_hg19_v1_chr4_-_111543909	588530	-	AK299306|EGF|1950|epidermal growth factor##NM_001178130|EGF|1950|epidermal growth factor##NM_001178131|EGF|1950|epidermal growth factor##NM_001963|EGF|1950|epidermal growth factor##X04571|EGF|1950|epidermal growth factor##AK126648|LRIT3|345193|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3##NM_198506|LRIT3|345193|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3##NM_006583|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC128120|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC128121|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC128401|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC001305|ELOVL6|79071|ELOVL fatty acid elongase 6##AK027031|ELOVL6|79071|ELOVL fatty acid elongase 6##NM_001130721|ELOVL6|79071|ELOVL fatty acid elongase 6##NM_024090|ELOVL6|79071|ELOVL fatty acid elongase 6##AM888273|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888274|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888275|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888276|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888277|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888278|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888279|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888280|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888281|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888282|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888283|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##NM_001977|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##BC094770|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##L12468|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##BX641012|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##L14721|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AK313412|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AK313987|PITX2|5308|paired-like homeodomain 2	0.0	0.0	
chr1	79934456	79934553	reg1004793.p1	6.546	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-462077	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-819006	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	-848373	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	1837423	+	AF104266 AF104938 AF104939 NM_012302	2331577	+	AK097722 TSC_hg19_v1_chr1_-_84326308	4391764	-	BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	1.339593	0.0	
chr5	110566193	110566359	reg1005837.p1	6.546	+	L24959 TSC_hg19_v1_chr5_+_110560081 NM_001744 AK311662 AK312840 BC025687 BC016695 D30742 L17000 AB529005 CU677679 DQ892902 DQ893195 DQ893196 DQ896523 DQ896524 DQ896525 DQ896526	-6327	+	AF385437 NM_139281 BC133025 BC136517 AK095312 TSC_hg19_v1_chr5_+_110428045 AL832494	-138317	+	AY037115 NM_033035	-158887	+	AK054566 NM_139164 TSC_hg19_v1_chr5_-_110848234 AK290312 AK310848 BC019632 AK125317 AK308851 AK315863 AK315869	281926	-	BC042956 TSC_hg19_v1_chr5_-_110848300	282018	-	NM_001142483	525671	-	L24959|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##NM_001744|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AK311662|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AK312840|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##BC025687|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##BC016695|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##D30742|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##L17000|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ892902|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ893195|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ893196|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896523|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896524|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896525|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896526|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AF385437|WDR36|134430|WD repeat domain 36##NM_139281|WDR36|134430|WD repeat domain 36##BC133025|WDR36|134430|WD repeat domain 36##BC136517|WDR36|134430|WD repeat domain 36##AK095312|WDR36|134430|WD repeat domain 36##AL832494|WDR36|134430|WD repeat domain 36##AY037115|TSLP|85480|thymic stromal lymphopoietin##NM_033035|TSLP|85480|thymic stromal lymphopoietin##AK054566|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_139164|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK290312|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK310848|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC019632|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK125317|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK308851|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315863|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315869|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC042956|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_001142483|C5orf13|9315|chromosome 5 open reading frame 13	0.994807	0.0	denovo_WM_7:-4:0.629	denovo_WM_7:-5:0.244
chr5	156580510	156580636	reg1006591.p1	6.545	+	NM_001100816 TSC_hg19_v1_chr5_-_156569881 AK123613 AF031383 BC005250 BC006968 AK308393 NM_004270	-10721	-	TSC_hg19_v1_chr5_-_156536188 NM_032782	-44357	-	AK027334 TSC_hg19_v1_chr5_-_156536052 AF450242 AF450243 AK314406 BC020843 AF251707 BC063431	-44470	-	AY973323 CU692472 AF465821 BC025397 AK057543 BC022035 BC025409 BC025998 NM_130899	12655	-	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	27344	+	TSC_hg19_v1_chr5_+_156693105 AL136549 NM_001037333 AK294220 AK295865 AK297401 AK303702 AB032994 AF160973 NM_001037332	112679	+	NM_001100816|MED7|9443|mediator complex subunit 7##AF031383|MED7|9443|mediator complex subunit 7##BC005250|MED7|9443|mediator complex subunit 7##BC006968|MED7|9443|mediator complex subunit 7##AK308393|MED7|9443|mediator complex subunit 7##NM_004270|MED7|9443|mediator complex subunit 7##NM_032782|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK027334|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450242|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450243|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK314406|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC020843|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF251707|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC063431|HAVCR2|84868|hepatitis A virus cellular receptor 2##AY973323|FAM71B|153745|family with sequence similarity 71, member B##AF465821|FAM71B|153745|family with sequence similarity 71, member B##BC025397|FAM71B|153745|family with sequence similarity 71, member B##AK057543|FAM71B|153745|family with sequence similarity 71, member B##BC022035|FAM71B|153745|family with sequence similarity 71, member B##BC025409|FAM71B|153745|family with sequence similarity 71, member B##BC025998|FAM71B|153745|family with sequence similarity 71, member B##NM_130899|FAM71B|153745|family with sequence similarity 71, member B##AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase##AL136549|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_001037333|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK294220|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK295865|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK297401|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK303702|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AB032994|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AF160973|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_001037332|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2	1.031314	0.0	
chr10	47918435	47918605	reg1005652.p1	6.544	+	NM_018232	-24498	+	NM_001630 BC008813 BC073755 AK096715 AK313626 X16662 BC029890 AK300191 AK223149 AK307182 CU679125 CU687256	-171505	+	BC171820 BC171845 BC171847 NM_001190810	-704895	-	BC171820 BC171845 BC171847 NM_001190810	297203	+	BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556 BC146955 BC146968	329144	+	AK298761 NM_001040084 BC073755 AK096715 Z36830 AK296976 BC004376 NM_001098845 X16662 BC029890 AK300158 AK223149 AK296573 AK300139 M81844 AB590156 CU687256 DQ893430 DQ896775	336805	+	NM_018232|FAM21B|55747|family with sequence similarity 21, member B##NM_001630|ANXA8L2|244|annexin A8-like 2##BC008813|ANXA8L2|244|annexin A8-like 2##BC073755|ANXA8|653145|annexin A8##AK313626|ANXA8L2|244|annexin A8-like 2##X16662|ANXA8L2|244|annexin A8-like 2##AK300191|ANXA8L2|244|annexin A8-like 2##AK223149|ANXA8L2|244|annexin A8-like 2##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##AK298761|ANXA8|653145|annexin A8##NM_001040084|ANXA8|653145|annexin A8##BC073755|ANXA8|653145|annexin A8##Z36830|ANXA8|653145|annexin A8##BC004376|ANXA8|653145|annexin A8##NM_001098845|ANXA8L1|728113|annexin A8-like 1##X16662|ANXA8L2|244|annexin A8-like 2##AK300158|ANXA8|653145|annexin A8##AK223149|ANXA8L2|244|annexin A8-like 2##AK296573|ANXA8|653145|annexin A8##AK300139|ANXA8|653145|annexin A8##M81844|ANXA8|653145|annexin A8##DQ893430|ANXA8L2|244|annexin A8-like 2##DQ896775|ANXA8|653145|annexin A8	0.996052	0.0	denovo_WM_7:50:0.928
chr9	71783877	71784057	reg1002432.p2	6.544	+	AF083893 TSC_hg19_v1_chr9_+_71736397	-47556	+	NM_001170414 TSC_hg19_v1_chr9_+_71736198 AK295016	-47766	+	TSC_hg19_v1_chr9_+_71650693 BC048097 BC023633 CU690546	-133280	+	NM_001170630 NM_004817 NM_201629 BC027592 TSC_hg19_v1_chr9_+_71789110	5073	+	TSC_hg19_v1_chr9_+_71789197 AF083892 BC028426 AF489824 L27476 AB385223 AM392689 AM392712 AM392803 AM392967	5252	+	NM_001170415 AK302483 AK295034 NM_001170416	36034	+	AF083893|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170414|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295016|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC048097|FXN|2395|frataxin##BC023633|FXN|2395|frataxin##NM_001170630|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_004817|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_201629|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC027592|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF083892|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC028426|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF489824|TJP2|9414|tight junction protein 2 (zona occludens 2)##L27476|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392689|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392712|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392803|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392967|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170415|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK302483|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295034|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170416|TJP2|9414|tight junction protein 2 (zona occludens 2)	0.0	0.0	
chr1	109708239	109708399	reg1004236.p1	6.543	+	BC125208 TSC_hg19_v1_chr1_+_109656794 AK297221 AK297478 AK304003	-51532	+	TSC_hg19_v1_chr1_+_109656726 AK057647	-51593	+	TSC_hg19_v1_chr1_+_109656574 NM_020775	-51719	+	TSC_hg19_v1_chr1_+_109756523 NM_006513	48180	+	BC111398 X91257 TSC_hg19_v1_chr1_+_109756539	48220	+	TSC_hg19_v1_chr1_+_109756553 AK222677 AK312771	48231	+	BC125208|KIAA1324|57535|KIAA1324##AK297221|KIAA1324|57535|KIAA1324##AK297478|KIAA1324|57535|KIAA1324##AK304003|KIAA1324|57535|KIAA1324##AK057647|KIAA1324|57535|KIAA1324##NM_020775|KIAA1324|57535|KIAA1324##NM_006513|SARS|6301|seryl-tRNA synthetase##BC111398|SARS|6301|seryl-tRNA synthetase##X91257|SARS|6301|seryl-tRNA synthetase##AK222677|SARS|6301|seryl-tRNA synthetase##AK312771|SARS|6301|seryl-tRNA synthetase	2.838274	0.0	denovo_WM_7:58:0.811	denovo_WM_7:-85:0.763	denovo_WM_7:-103:0.417	denovo_WM_7:-104:0.419
chr15	99984470	99984625	reg1006356.p1	6.543	+	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	-192905	+	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	-193131	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	-194841	-	NM_001130926 NM_001130927 NM_001171894 NM_005587 TSC_hg19_v1_chr15_+_100106173 AB208985	121606	+	TSC_hg19_v1_chr15_+_100106196 AL831995 AK294207	121647	+	BC013437 TSC_hg19_v1_chr15_+_100106231 AK291835 X68504	121688	+	BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##NM_001130926|MEF2A|4205|myocyte enhancer factor 2A##NM_001130927|MEF2A|4205|myocyte enhancer factor 2A##NM_001171894|MEF2A|4205|myocyte enhancer factor 2A##NM_005587|MEF2A|4205|myocyte enhancer factor 2A##AB208985|MEF2A|4205|myocyte enhancer factor 2A##AL831995|MEF2A|4205|myocyte enhancer factor 2A##AK294207|MEF2A|4205|myocyte enhancer factor 2A##BC013437|MEF2A|4205|myocyte enhancer factor 2A##AK291835|MEF2A|4205|myocyte enhancer factor 2A##X68504|MEF2A|4205|myocyte enhancer factor 2A	1.160637	0.0	denovo_WM_7:12:0.239	denovo_WM_7:25:0.411
chr17	26867802	26867934	reg1006396.p2	6.543	+	NM_003593 Y11739	-16910	+	TSC_hg19_v1_chr17_+_26800661 AK314684 NM_001145975 NM_001145976 NM_003984 U26209 BC096276 BC096277 BC096278 BC096279 AK091926 AK298388 AK303909 AK303936	-67162	+	CU678258 TSC_hg19_v1_chr17_+_26794963	-72965	+	AF028788 AF028789 TSC_hg19_v1_chr17_-_26879616 AK292329 BC027176 U40998	11742	-	NM_005148 NM_054035 TSC_hg19_v1_chr17_-_26879647 AB593014	11784	-	AY359112 AB057723 AB527641 CU686718 TSC_hg19_v1_chr17_-_26898525 AK055512 BC069228 AK075428 AK297046 AK314583	30661	-	NM_003593|FOXN1|8456|forkhead box N1##Y11739|FOXN1|8456|forkhead box N1##AK314684|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##NM_001145975|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##NM_001145976|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##NM_003984|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##U26209|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096276|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096277|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096278|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##BC096279|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK091926|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK298388|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK303909|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AK303936|SLC13A2|9058|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2##AF028788|UNC119|9094|unc-119 homolog (C. elegans)##AF028789|UNC119|9094|unc-119 homolog (C. elegans)##AK292329|UNC119|9094|unc-119 homolog (C. elegans)##BC027176|UNC119|9094|unc-119 homolog (C. elegans)##U40998|UNC119|9094|unc-119 homolog (C. elegans)##NM_005148|UNC119|9094|unc-119 homolog (C. elegans)##NM_054035|UNC119|9094|unc-119 homolog (C. elegans)##AB593014|UNC119|9094|unc-119 homolog (C. elegans)##AY359112|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AB057723|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK055512|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##BC069228|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK075428|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK297046|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S##AK314583|PIGS|94005|phosphatidylinositol glycan anchor biosynthesis, class S	0.0	0.999776	CTCF.p2:46:1.000
chr5	139731380	139731544	reg1006198.p2	6.543	+	M60278 BC033097 TSC_hg19_v1_chr5_-_139726189 AK222688 AK307310 AK313202 NM_001945	-5279	-	TSC_hg19_v1_chr5_-_139725861 EU832647 EU832724	-5574	-	TSC_hg19_v1_chr5_-_139682680 BC011869 BC003620 BC006202 AK223394 NM_002622	-48778	-	AF332961 NM_031467 AF336237 BC136262 BC143602 AF313465 AB032762	8344	+	TSC_hg19_v1_chr5_-_139780719 BC079833	49255	-	TSC_hg19_v1_chr5_-_139781027 BC030152	49579	-	M60278|HBEGF|1839|heparin-binding EGF-like growth factor##BC033097|HBEGF|1839|heparin-binding EGF-like growth factor##AK222688|HBEGF|1839|heparin-binding EGF-like growth factor##AK307310|HBEGF|1839|heparin-binding EGF-like growth factor##AK313202|HBEGF|1839|heparin-binding EGF-like growth factor##NM_001945|HBEGF|1839|heparin-binding EGF-like growth factor##EU832647|HBEGF|1839|heparin-binding EGF-like growth factor##EU832724|HBEGF|1839|heparin-binding EGF-like growth factor##BC011869|PFDN1|5201|prefoldin subunit 1##BC003620|PFDN1|5201|prefoldin subunit 1##BC006202|PFDN1|5201|prefoldin subunit 1##AK223394|PFDN1|5201|prefoldin subunit 1##NM_002622|PFDN1|5201|prefoldin subunit 1##AF332961|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##NM_031467|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AF336237|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##BC136262|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##BC143602|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AF313465|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9##AB032762|SLC4A9|83697|solute carrier family 4, sodium bicarbonate cotransporter, member 9	0.0	0.798695	CTCF.p2:39:0.799
chr10	81513479	81513627	reg1006298.p1	6.542	+	AK290703 AK298002 AK298029 AK298034 NM_001093770 NM_001164644 NM_001164645 NM_001164646 NM_001164647 NM_005411 S69686 AK316196 HQ021433 HQ021434 HQ021435 HQ021436 HQ021437 HQ021438 HQ021439 HQ021440 HQ021441 HQ021442 S69680 S69681 AK298092 AK309518 S69685 S69687 S69688 S69690 BC026229 M13686 BC111570	-142849	+	BC111571 K03475 BC157866 BC157890 BC171875 S69685 S69686 AK225599 AK298041 AK298074 AK298114 AK313179 AK316192 HQ021421 HQ021422 HQ021423 HQ021424 HQ021425 HQ021426 HQ021427 HQ021428 HQ021429 HQ021430 HQ021431 HQ021432 NM_001098668 S69680 S69681 S69683 S69791	-193402	-	BC070048 NM_001099692	-241197	+	BC022318 NM_003019	195307	-	TSC_hg19_v1_chr10_+_81838420 AK222536 AK023325 BC022252 NM_025125 CR457310	324883	+	BC066348 BC090922 NM_001012973	378704	+	AK290703|SFTPA1|653509|surfactant protein A1##AK298002|SFTPA1|653509|surfactant protein A1##AK298029|SFTPA1|653509|surfactant protein A1##AK298034|SFTPA1|653509|surfactant protein A1##NM_001093770|SFTPA1|653509|surfactant protein A1##NM_001164644|SFTPA1|653509|surfactant protein A1##NM_001164645|SFTPA1|653509|surfactant protein A1##NM_001164646|SFTPA1|653509|surfactant protein A1##NM_001164647|SFTPA1|653509|surfactant protein A1##NM_005411|SFTPA1|653509|surfactant protein A1##AK316196|SFTPA1|653509|surfactant protein A1##HQ021433|SFTPA1|653509|surfactant protein A1##HQ021434|SFTPA1|653509|surfactant protein A1##HQ021435|SFTPA1|653509|surfactant protein A1##HQ021436|SFTPA1|653509|surfactant protein A1##HQ021437|SFTPA1|653509|surfactant protein A1##HQ021438|SFTPA1|653509|surfactant protein A1##HQ021439|SFTPA1|653509|surfactant protein A1##HQ021440|SFTPA1|653509|surfactant protein A1##HQ021441|SFTPA1|653509|surfactant protein A1##HQ021442|SFTPA1|653509|surfactant protein A1##AK298092|SFTPA1|653509|surfactant protein A1##AK309518|SFTPA1|653509|surfactant protein A1##BC026229|SFTPA1|653509|surfactant protein A1##BC111570|SFTPA1|653509|surfactant protein A1##BC111571|SFTPA2|729238|surfactant protein A2##K03475|SFTPA2|729238|surfactant protein A2##BC157866|SFTPA2|729238|surfactant protein A2##BC157890|SFTPA2|729238|surfactant protein A2##BC171875|SFTPA1|653509|surfactant protein A1##AK225599|SFTPA2|729238|surfactant protein A2##AK298041|SFTPA2|729238|surfactant protein A2##AK298074|SFTPA2|729238|surfactant protein A2##AK298114|SFTPA2|729238|surfactant protein A2##AK313179|SFTPA2|729238|surfactant protein A2##AK316192|SFTPA2|729238|surfactant protein A2##HQ021421|SFTPA2|729238|surfactant protein A2##HQ021422|SFTPA2|729238|surfactant protein A2##HQ021423|SFTPA2|729238|surfactant protein A2##HQ021424|SFTPA2|729238|surfactant protein A2##HQ021425|SFTPA2|729238|surfactant protein A2##HQ021426|SFTPA2|729238|surfactant protein A2##HQ021427|SFTPA2|729238|surfactant protein A2##HQ021428|SFTPA2|729238|surfactant protein A2##HQ021429|SFTPA2|729238|surfactant protein A2##HQ021430|SFTPA2|729238|surfactant protein A2##HQ021431|SFTPA2|729238|surfactant protein A2##HQ021432|SFTPA2|729238|surfactant protein A2##NM_001098668|SFTPA2|729238|surfactant protein A2##BC070048|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##NM_001099692|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##BC022318|SFTPD|6441|surfactant protein D##NM_003019|SFTPD|6441|surfactant protein D##AK222536|FAM213A|80195|family with sequence similarity 213, member A##AK023325|FAM213A|80195|family with sequence similarity 213, member A##BC022252|FAM213A|80195|family with sequence similarity 213, member A##NM_025125|FAM213A|80195|family with sequence similarity 213, member A##CR457310|FAM213A|80195|family with sequence similarity 213, member A##BC066348|PLAC9|219348|placenta-specific 9##BC090922|PLAC9|219348|placenta-specific 9##NM_001012973|PLAC9|219348|placenta-specific 9	1.241175	0.0	denovo_WM_7:0:0.235	denovo_WM_7:-1:0.329	denovo_WM_7:-2:0.364
chr15	44061933	44062077	reg1007007.p1	6.542	+	TSC_hg19_v1_chr15_+_44038685 U42068 D16234 D83485 AB527303 CU690254 DQ893070 DQ896325	-23223	+	TSC_hg19_v1_chr15_+_44038656 AK075455	-23352	+	TSC_hg19_v1_chr15_+_44038635 NM_005313 AK075481 AK293249 BC036000 Z49835 BC071878 BC014433	-23440	+	TSC_hg19_v1_chr15_+_44069338 NM_001199877 BC009869	7300	+	NM_025165	7496	-	BC008214 NM_001018108 NM_001199875 NM_001199876 TSC_hg19_v1_chr15_+_44084335	22214	+	U42068|PDIA3|2923|protein disulfide isomerase family A, member 3##D16234|PDIA3|2923|protein disulfide isomerase family A, member 3##D83485|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ893070|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ896325|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075455|PDIA3|2923|protein disulfide isomerase family A, member 3##NM_005313|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075481|PDIA3|2923|protein disulfide isomerase family A, member 3##AK293249|PDIA3|2923|protein disulfide isomerase family A, member 3##BC036000|PDIA3|2923|protein disulfide isomerase family A, member 3##Z49835|PDIA3|2923|protein disulfide isomerase family A, member 3##BC071878|PDIA3|2923|protein disulfide isomerase family A, member 3##BC014433|PDIA3|2923|protein disulfide isomerase family A, member 3##NM_001199877|SERF2|10169|small EDRK-rich factor 2##BC009869|SERF2|10169|small EDRK-rich factor 2##NM_025165|ELL3|80237|elongation factor RNA polymerase II-like 3##BC008214|SERF2|10169|small EDRK-rich factor 2##NM_001018108|SERF2|10169|small EDRK-rich factor 2##NM_001199875|SERF2|10169|small EDRK-rich factor 2##NM_001199876|SERF2|10169|small EDRK-rich factor 2	0.0	0.430065	CTCF.p2:-7:0.430
chr4	116977769	116977835	reg1007239.p1	6.542	+	BC113075 BC012326 AK289670 AB036429 NM_022569	-942821	-	NM_003360 U30930	-1434280	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-1458219	+	AK074617 BC030831 NM_152402	1028931	-	TSC_hg19_v1_chr4_+_118954764 AY358852	1976969	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	1977773	+	BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	0.813117	0.705008	CTCF.p2:-21:0.705	denovo_WM_7:74:0.750
chr10	7562726	7562837	reg1005562.p2	6.541	+	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	-109347	-	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-111531	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-940301	+	AK027849 TSC_hg19_v1_chr10_-_7659249	96436	-	BC004282 NM_032817	98843	-	AK027831 AB075833 TSC_hg19_v1_chr10_-_7682819	119999	-	BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AK027831|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AB075833|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	0.0	0.0	
chr2	231337101	231337262	reg1006745.p1	6.541	+	AK091898 NM_001206704	-55711	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-56225	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-56262	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	240365	+	TSC_hg19_v1_chr2_+_231577633 BC020570	240463	+	AK292382 NM_001130849 NM_001130850 AK315692	241097	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	1.071369	0.0	
chr2	9782992	9783135	reg1004446.p1	6.541	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-11938	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	-12014	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	-12450	-	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	200557	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	308787	+	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	400729	+	NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11	1.818213	0.0	denovo_WM_7:66:0.813	denovo_WM_7:81:0.438	denovo_WM_7:82:0.450
chr12	12957457	12957602	reg1005355.p1	6.539	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	-18952	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	-78673	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-87403	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	8761	+	NM_003979	86426	+	AK001761 TSC_hg19_v1_chr12_+_13044469	86882	+	BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_003979|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A##AK001761|GPRC5A|9052|G protein-coupled receptor, family C, group 5, member A	0.998499	0.0	denovo_WM_7:24:0.772
chr19	973002	973130	reg1005590.p2	6.537	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-47055	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-55673	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-59842	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	11268	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	27299	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	47992	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	0.996443	0.0	
chr19	11047567	11047712	reg1000191.p2	6.536	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-8182	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-8400	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-65203	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	24007	+	TSC_hg19_v1_chr19_+_11071717 BC007302	24076	+	TSC_hg19_v1_chr19_+_11071720 BC035916	24111	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.0	0.0	
chr1	8556171	8556333	reg1006209.p1	6.535	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-72235	-	NM_001080397	-171863	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-469854	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	321340	-	GU170215 NM_001201483	375382	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	382455	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.998688	0.0	
chr3	112766522	112766658	reg1006577.p1	6.535	+	BC067743 TSC_hg19_v1_chr3_-_112738514 AK295954 AK293218 BC014673 NM_015412 CR749341	-28044	-	TSC_hg19_v1_chr3_-_112738512 AK301161 EU831596 EU831683 EU831956 EU832050 CU688320 AL117573 BC056663 AK295165 AK304022 AK024325 AK300811 AK304083	-28092	-	NM_014170 NM_138485 BC037163 TSC_hg19_v1_chr3_+_112709842 BC000003 AF161484 BC010137 AK289611 CU691454 DQ892307 DQ895506	-56768	+	AY358328 NM_033254 AK309055	164809	+	BC101582 BC113553 AK056472 NM_001164496 NM_018338	393749	-	TSC_hg19_v1_chr3_-_113233690 AK296160	467096	-	BC067743|C3orf17|25871|chromosome 3 open reading frame 17##AK295954|C3orf17|25871|chromosome 3 open reading frame 17##AK293218|C3orf17|25871|chromosome 3 open reading frame 17##BC014673|C3orf17|25871|chromosome 3 open reading frame 17##NM_015412|C3orf17|25871|chromosome 3 open reading frame 17##CR749341|C3orf17|25871|chromosome 3 open reading frame 17##AK301161|C3orf17|25871|chromosome 3 open reading frame 17##EU831596|C3orf17|25871|chromosome 3 open reading frame 17##EU831683|C3orf17|25871|chromosome 3 open reading frame 17##EU831956|C3orf17|25871|chromosome 3 open reading frame 17##EU832050|C3orf17|25871|chromosome 3 open reading frame 17##AL117573|C3orf17|25871|chromosome 3 open reading frame 17##BC056663|C3orf17|25871|chromosome 3 open reading frame 17##AK295165|C3orf17|25871|chromosome 3 open reading frame 17##AK304022|C3orf17|25871|chromosome 3 open reading frame 17##AK024325|C3orf17|25871|chromosome 3 open reading frame 17##AK300811|C3orf17|25871|chromosome 3 open reading frame 17##AK304083|C3orf17|25871|chromosome 3 open reading frame 17##NM_014170|GTPBP8|29083|GTP-binding protein 8 (putative)##NM_138485|GTPBP8|29083|GTP-binding protein 8 (putative)##BC037163|GTPBP8|29083|GTP-binding protein 8 (putative)##BC000003|GTPBP8|29083|GTP-binding protein 8 (putative)##AF161484|GTPBP8|29083|GTP-binding protein 8 (putative)##BC010137|GTPBP8|29083|GTP-binding protein 8 (putative)##AK289611|GTPBP8|29083|GTP-binding protein 8 (putative)##DQ892307|GTPBP8|29083|GTP-binding protein 8 (putative)##DQ895506|GTPBP8|29083|GTP-binding protein 8 (putative)##AY358328|BOC|91653|Boc homolog (mouse)##NM_033254|BOC|91653|Boc homolog (mouse)##AK309055|BOC|91653|Boc homolog (mouse)##BC101582|WDR52|55779|WD repeat domain 52##BC113553|WDR52|55779|WD repeat domain 52##AK056472|WDR52|55779|WD repeat domain 52##NM_001164496|WDR52|55779|WD repeat domain 52##NM_018338|WDR52|55779|WD repeat domain 52##AK296160|SPICE1|152185|spindle and centriole associated protein 1	0.995854	0.0	
chr4	44929555	44929679	reg1005537.p1	6.535	+	TSC_hg19_v1_chr4_-_44728574 AK296051 AB209904 AK055639 AY173948 AK129655 AK308920 AF247786 NM_138335	-201053	-	TSC_hg19_v1_chr4_+_44680469 NM_021927 BX647242 BC036768 BC012338 AK225314 AK023282 AK308667	-249157	+	AK096895 BC103995 BC103996 NM_182592	-275960	-	CU689108 DQ890976 DQ894150 CR933628 BC031087 AK289806 AK299884 BX648937 NM_173536 AK122845	1196396	-	TSC_hg19_v1_chr4_-_46391400 AK125179 NM_001114175	1461782	-	TSC_hg19_v1_chr4_-_46391484 AK307128	1461896	-	AK296051|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AB209904|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AK055639|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AY173948|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AK129655|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##AF247786|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##NM_138335|GNPDA2|132789|glucosamine-6-phosphate deaminase 2##NM_021927|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##BX647242|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##BC036768|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##BC012338|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK225314|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK023282|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK308667|GUF1|60558|GUF1 GTPase homolog (S. cerevisiae)##AK096895|YIPF7|285525|Yip1 domain family, member 7##BC103995|YIPF7|285525|Yip1 domain family, member 7##BC103996|YIPF7|285525|Yip1 domain family, member 7##NM_182592|YIPF7|285525|Yip1 domain family, member 7##DQ890976|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##DQ894150|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##CR933628|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##BC031087|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##AK289806|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##AK299884|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##BX648937|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##NM_173536|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##AK122845|GABRG1|2565|gamma-aminobutyric acid (GABA) A receptor, gamma 1##AK125179|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##NM_001114175|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2##AK307128|GABRA2|2555|gamma-aminobutyric acid (GABA) A receptor, alpha 2	1.77159	0.975048	denovo_WM_7:-1:0.238	denovo_WM_7:6:0.659	denovo_WM_7:23:0.228	denovo_WM_7:24:0.383	CTCF.p2:-34:0.975
chr5	137529670	137529774	reg1007182.p2	6.535	+	TSC_hg19_v1_chr5_+_137514857 AK296879 AK025790 AF153329 BC012999	-14907	+	NM_005733	-15306	+	BC008039 BC008076 AB384833 AB209079 TSC_hg19_v1_chr5_-_137514319 AK310380 AK289951 AK293621 AK297756 AK299694 AK312333 AK225928 AL136823 NM_001164326 NM_006696 NM_139199	-15389	-	AF191341 BT009810 AB590268 DQ891686 DQ894870 TSC_hg19_v1_chr5_-_137549013 BC017713 AF053977 BC005258 BC010944 AK291610 AB011472 AK223250	19281	-	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	19309	-	AF051767 DQ890850 DQ894004 BC037951 AY358997 AK314022 AK297693 NM_001496 AY359037 TSC_hg19_v1_chr5_-_137610343	80506	-	AK296879|KIF20A|10112|kinesin family member 20A##AK025790|KIF20A|10112|kinesin family member 20A##AF153329|KIF20A|10112|kinesin family member 20A##BC012999|KIF20A|10112|kinesin family member 20A##NM_005733|KIF20A|10112|kinesin family member 20A##BC008039|BRD8|10902|bromodomain containing 8##BC008076|BRD8|10902|bromodomain containing 8##AB209079|BRD8|10902|bromodomain containing 8##AK310380|BRD8|10902|bromodomain containing 8##AK289951|BRD8|10902|bromodomain containing 8##AK293621|BRD8|10902|bromodomain containing 8##AK297756|BRD8|10902|bromodomain containing 8##AK312333|BRD8|10902|bromodomain containing 8##AK225928|BRD8|10902|bromodomain containing 8##AL136823|BRD8|10902|bromodomain containing 8##NM_001164326|BRD8|10902|bromodomain containing 8##NM_006696|BRD8|10902|bromodomain containing 8##NM_139199|BRD8|10902|bromodomain containing 8##AF191341|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BT009810|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ891686|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ894870|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC017713|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF053977|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC005258|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC010944|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK291610|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AB011472|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK223250|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF051767|GFRA3|2676|GDNF family receptor alpha 3##DQ890850|GFRA3|2676|GDNF family receptor alpha 3##DQ894004|GFRA3|2676|GDNF family receptor alpha 3##BC037951|GFRA3|2676|GDNF family receptor alpha 3##AY358997|GFRA3|2676|GDNF family receptor alpha 3##AK314022|GFRA3|2676|GDNF family receptor alpha 3##AK297693|GFRA3|2676|GDNF family receptor alpha 3##NM_001496|GFRA3|2676|GDNF family receptor alpha 3##AY359037|GFRA3|2676|GDNF family receptor alpha 3	0.999885	0.0	denovo_WM_7:-65:0.953
chr19	54608448	54608598	reg1006331.p1	6.534	+	TSC_hg19_v1_chr19_+_54606162 AF070653 BC061644 NM_004542 AK289489 BC011021 BC022369 AF044955 CR542143	-2357	+	TSC_hg19_v1_chr19_-_54604114 AF391163 AF474153 DQ893697 DQ894733 AF391162 AK091111 AX746784 AK311307 AK130199 AF391164 AF474152 AF251702 NM_130771 NM_133168 NM_133169 NM_206818	-4404	-	DQ479398 NM_001135686	-23890	-	NM_015629 DQ426885 AY040822 BC117389	10304	+	AK310647 AF052052 AK310627 NM_013342	10516	-	TSC_hg19_v1_chr19_+_54619133 AK301709 AB593025	10607	+	AF070653|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC061644|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##NM_004542|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AK289489|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC011021|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC022369|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AF044955|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##CR542143|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AF391163|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474153|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ893697|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ894733|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391162|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK091111|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK311307|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK130199|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391164|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474152|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF251702|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_130771|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133168|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133169|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_206818|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ479398|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##NM_001135686|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##NM_015629|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AY040822|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##BC117389|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK310647|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AF052052|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK310627|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_013342|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK301709|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AB593025|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)	0.999525	0.0	
chr4	171178179	171178310	reg1006862.p1	6.534	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-166830	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-167046	-	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	-230739	-	NM_001034845 BC047551 BC144036 BC144037 BC063015	1556400	+	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	2911708	+	BC043556 TSC_hg19_v1_chr4_-_174090314	2912066	-	BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	1.081225	0.0	denovo_WM_7:15:0.639
chr1	153395037	153395152	reg1006687.p1	6.533	+	AY189118 NM_176823	-6095	+	Y00278 AK291328 X06234 NM_002964	-31491	-	X97859 BC070294 D83664 NM_005621	-47029	-	NM_001045479	17408	-	BC034687 M86757 NM_002963	38026	-	TSC_hg19_v1_chr1_-_153508468 AK312088 D28464	113371	-	AY189118|S100A7A|338324|S100 calcium binding protein A7A##NM_176823|S100A7A|338324|S100 calcium binding protein A7A##Y00278|S100A8|6279|S100 calcium binding protein A8##AK291328|S100A8|6279|S100 calcium binding protein A8##X06234|S100A8|6279|S100 calcium binding protein A8##NM_002964|S100A8|6279|S100 calcium binding protein A8##X97859|S100A12|6283|S100 calcium binding protein A12##BC070294|S100A12|6283|S100 calcium binding protein A12##D83664|S100A12|6283|S100 calcium binding protein A12##NM_005621|S100A12|6283|S100 calcium binding protein A12##NM_001045479|S100A7L2|645922|S100 calcium binding protein A7-like 2##BC034687|S100A7|6278|S100 calcium binding protein A7##M86757|S100A7|6278|S100 calcium binding protein A7##NM_002963|S100A7|6278|S100 calcium binding protein A7##AK312088|S100A6|6277|S100 calcium binding protein A6##D28464|S100A6|6277|S100 calcium binding protein A6	0.0	0.0	
chr5	55965951	55966090	reg1003356.p1	6.533	+	AK123389 NM_024669	-436835	-	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-675257	-	NM_001242636 NM_001242639	-816871	+	NM_005921	144879	+	TSC_hg19_v1_chr5_+_56111375 AK307828	145344	+	TSC_hg19_v1_chr5_+_56111395 AF042838	145398	+	AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AF042838|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.0	
chr4	124319084	124319193	reg1003722.p2	6.531	+	TSC_hg19_v1_chr4_+_124317949 AY192146 NM_199327	-1182	+	TSC_hg19_v1_chr4_+_123844255 NM_145207 AF361489 AL832175 AF479656 AK091384 AX746949 BC048217 AM392939 AM393832	-474886	+	AF019632 AK294450 NM_198041	-474998	-	AK026960 BC063856 NM_005841	1535	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	1314676	-	NM_024582	1918428	+	AY192146|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_199327|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_145207|SPATA5|166378|spermatogenesis associated 5##AF361489|SPATA5|166378|spermatogenesis associated 5##AL832175|SPATA5|166378|spermatogenesis associated 5##AF479656|SPATA5|166378|spermatogenesis associated 5##AK091384|SPATA5|166378|spermatogenesis associated 5##BC048217|SPATA5|166378|spermatogenesis associated 5##AM392939|SPATA5|166378|spermatogenesis associated 5##AM393832|SPATA5|166378|spermatogenesis associated 5##AF019632|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##AK294450|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##NM_198041|NUDT6|11162|nudix (nucleoside diphosphate linked moiety X)-type motif 6##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)	0.0	0.027026	
chr15	65923279	65923407	reg1005853.p1	6.530	+	AF062922 NM_004727	-9074	+	BC012630 TSC_hg19_v1_chr15_+_65903706 AB014602 BC029407 AK304006	-19688	+	AL136662 TSC_hg19_v1_chr15_-_65903462 BC007991 AK296134 AK027475 AK301033 AK301742 AK310857 AK301222 AK293207 NM_001207058 NM_001207059	-19827	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	161130	-	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	161250	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	238504	+	AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC012630|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AB014602|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC029407|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK304006|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AL136662|C15orf44|81556|chromosome 15 open reading frame 44##BC007991|C15orf44|81556|chromosome 15 open reading frame 44##AK296134|C15orf44|81556|chromosome 15 open reading frame 44##AK027475|C15orf44|81556|chromosome 15 open reading frame 44##AK301033|C15orf44|81556|chromosome 15 open reading frame 44##AK301742|C15orf44|81556|chromosome 15 open reading frame 44##AK310857|C15orf44|81556|chromosome 15 open reading frame 44##AK301222|C15orf44|81556|chromosome 15 open reading frame 44##AK293207|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207058|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207059|C15orf44|81556|chromosome 15 open reading frame 44##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family	0.095143	0.031343	
chr16	71852055	71852235	reg1002222.p1	6.530	+	TSC_hg19_v1_chr16_-_71842963 BC036283 AK128078 NM_001030007 NM_001128 AK314484	-9167	-	TSC_hg19_v1_chr16_-_71842738 AK293233 AK225906 AK294546 AK299630	-9392	-	TSC_hg19_v1_chr16_-_71842690 AB015317 Y12226	-9511	-	TSC_hg19_v1_chr16_+_71879878 AB621810	27730	+	TSC_hg19_v1_chr16_+_71879908 NM_001137675	27776	+	AF070588 AK296603 NM_001201553 NM_017530	65282	-	BC036283|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK128078|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001030007|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001128|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK314484|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK293233|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK225906|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK294546|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK299630|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AB015317|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##Y12226|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001137675|ATXN1L|342371|ataxin 1-like##AF070588|ZNF821|55565|zinc finger protein 821##AK296603|ZNF821|55565|zinc finger protein 821##NM_001201553|ZNF821|55565|zinc finger protein 821##NM_017530|ZNF821|55565|zinc finger protein 821	0.0	0.0	
chr20	30335522	30335682	reg1006285.p1	6.530	+	NM_012112 TSC_hg19_v1_chr20_+_30327092 AK312549 AB024704 AF098158 AF287265 BC020207 BC004136	-8565	+	TSC_hg19_v1_chr20_-_30311772 BX647525	-23862	-	TSC_hg19_v1_chr20_-_30310672 AY263336 BC019307 NM_001191 NM_138578 AK290968 AY263335 CR936637	-24936	-	AJ272502 BC092413 NM_033118 BX647635	71582	+	AF042831 BT009768 AB464535 DQ896105 EU176391 BC013408 NM_004118	97767	-	NM_001012644	122198	-	NM_012112|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AK312549|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AB024704|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF098158|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF287265|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC020207|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC004136|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BX647525|BCL2L1|598|BCL2-like 1##AY263336|BCL2L1|598|BCL2-like 1##BC019307|BCL2L1|598|BCL2-like 1##NM_001191|BCL2L1|598|BCL2-like 1##NM_138578|BCL2L1|598|BCL2-like 1##AK290968|BCL2L1|598|BCL2-like 1##AY263335|BCL2L1|598|BCL2-like 1##CR936637|BCL2L1|598|BCL2-like 1##AJ272502|MYLK2|85366|myosin light chain kinase 2##BC092413|MYLK2|85366|myosin light chain kinase 2##NM_033118|MYLK2|85366|myosin light chain kinase 2##BX647635|MYLK2|85366|myosin light chain kinase 2##AF042831|FOXS1|2307|forkhead box S1##BT009768|FOXS1|2307|forkhead box S1##DQ896105|FOXS1|2307|forkhead box S1##EU176391|FOXS1|2307|forkhead box S1##BC013408|FOXS1|2307|forkhead box S1##NM_004118|FOXS1|2307|forkhead box S1##NM_001012644|DUSP15|128853|dual specificity phosphatase 15	0.998517	0.0	
chr5	142944170	142944331	reg1006870.p1	6.530	+	NM_001018074 NM_001018075 NM_001018077	-129174	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-160084	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-160218	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	247508	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	605885	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	605926	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr7	5534399	5534556	reg1006393.p1	6.530	+	NM_001080495	-71301	-	AY129022 TSC_hg19_v1_chr7_-_5461555	-72936	-	TSC_hg19_v1_chr7_-_5460842 BC140723	-73571	-	CU692902 TSC_hg19_v1_chr7_-_5553380 AK057042 BC006426 BC024256 NM_024963	18874	-	TSC_hg19_v1_chr7_-_5553435 AK130444 AK294949	18950	-	M28424 V00478 TSC_hg19_v1_chr7_-_5567980 HQ154074 DQ407611 EF036500	33535	-	NM_001080495|TNRC18|84629|trinucleotide repeat containing 18##AY129022|TNRC18|84629|trinucleotide repeat containing 18##AK057042|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC006426|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC024256|FBXL18|80028|F-box and leucine-rich repeat protein 18##NM_024963|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK130444|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK294949|FBXL18|80028|F-box and leucine-rich repeat protein 18##M28424|ACTB|60|actin, beta##V00478|ACTB|60|actin, beta##DQ407611|ACTB|60|actin, beta##EF036500|ACTB|60|actin, beta	0.0	0.856538	CTCF.p2:-52:0.857
chr6	111105309	111105441	reg1002198.p1	6.529	+	TSC_hg19_v1_chr6_-_110797837 BC047565 NM_033125	-307512	-	TSC_hg19_v1_chr6_-_110797817 AK304546	-307557	-	BC012014 AF268892 AY145502 BC037247 TSC_hg19_v1_chr6_-_110797794	-307587	-	AK304351 TSC_hg19_v1_chr6_+_111135843	30458	+	BC047513 TSC_hg19_v1_chr6_-_111136246	30843	-	AJ420571 TSC_hg19_v1_chr6_-_111136300	30924	-	BC047565|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##NM_033125|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304546|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC012014|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AF268892|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AY145502|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC037247|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304351|AMD1|262|adenosylmethionine decarboxylase 1##BC047513|CDK19|23097|cyclin-dependent kinase 19##AJ420571|CDK19|23097|cyclin-dependent kinase 19	1.33149	0.0	denovo_WM_7:46:0.200
chr12	38811853	38811988	reg1005600.p1	6.528	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-101295	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4636447	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4636534	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	487463	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1025079	-	AK314254 NM_005164	1201922	-	NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2	1.2075	0.0	denovo_WM_7:-53:0.342	denovo_WM_7:-54:0.419
chr17	56779400	56779580	reg1006314.p1	6.528	+	TSC_hg19_v1_chr17_+_56769962 AF029669 AK290487 BC073161 NM_002876 NM_058216 BC064578 BC093930 BC101485 BC143259 BC000667 AF029670 AB528656 BT007339 AK129738 AK303363	-9489	+	TSC_hg19_v1_chr17_+_56769933 BC107753	-9555	+	AK308299 BC040526 AK125896 BC045647 AL834143 NM_001201457 NM_031272 NM_198393	-10095	-	TSC_hg19_v1_chr17_+_56833220 AK289966	53727	+	AB028995 AF260269 BC151228 NM_014906 TSC_hg19_v1_chr17_+_56833235 BC136290 BC143845 AF520614	53804	+	TSC_hg19_v1_chr17_-_57184098 AF213365 AK289674 BX537955	404583	-	AF029669|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK290487|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC073161|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_002876|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_058216|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC093930|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC101485|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC143259|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC000667|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF029670|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BT007339|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK303363|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC107753|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK308299|TEX14|56155|testis expressed 14##BC040526|TEX14|56155|testis expressed 14##AK125896|TEX14|56155|testis expressed 14##BC045647|TEX14|56155|testis expressed 14##AL834143|TEX14|56155|testis expressed 14##NM_001201457|TEX14|56155|testis expressed 14##NM_031272|TEX14|56155|testis expressed 14##NM_198393|TEX14|56155|testis expressed 14##AK289966|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AB028995|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF260269|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC151228|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##NM_014906|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC136290|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC143845|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF520614|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF213365|TRIM37|4591|tripartite motif containing 37##AK289674|TRIM37|4591|tripartite motif containing 37##BX537955|TRIM37|4591|tripartite motif containing 37	0.0	0.0	
chr18	67563715	67563873	reg1007231.p2	6.528	+	TSC_hg19_v1_chr18_+_67068214 NM_152721 AY599248 BC096744	-495564	+	NM_024781 CR749520	-1098452	+	NM_001093729 AK308114 AK091108	-1181275	+	AK313199 TSC_hg19_v1_chr18_-_67615110	51305	-	GU935335 GU935336 U56102 NM_006566	60401	-	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	309144	-	NM_152721|DOK6|220164|docking protein 6##AY599248|DOK6|220164|docking protein 6##BC096744|DOK6|220164|docking protein 6##NM_024781|CCDC102B|79839|coiled-coil domain containing 102B##CR749520|CCDC102B|79839|coiled-coil domain containing 102B##NM_001093729|CCDC102B|79839|coiled-coil domain containing 102B##AK308114|CCDC102B|79839|coiled-coil domain containing 102B##AK091108|CCDC102B|79839|coiled-coil domain containing 102B##AK313199|CD226|10666|CD226 molecule##GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin	0.970358	0.0	denovo_WM_7:-39:0.876
chr8	10872629	10872768	reg1005422.p1	6.528	+	TSC_hg19_v1_chr8_-_10697386 AF205718 AF418553 AJ344104	-175289	-	AY238941 AY523566 BC093762 BC143382 NM_017884 TSC_hg19_v1_chr8_-_10697379 AY029161 AK313715 BC015479 AK296724	-175364	-	AJ409320 BT006693 CU687196 AB464717 BC071947 BC004299 AK055556 AK223574 NM_031439 TSC_hg19_v1_chr8_-_10588025	-284714	-	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	186167	-	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	269314	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	269657	+	AF205718|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AF418553|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ344104|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY238941|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY523566|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC093762|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC143382|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##NM_017884|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AK313715|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC015479|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ409320|SOX7|83595|SRY (sex determining region Y)-box 7##BT006693|SOX7|83595|SRY (sex determining region Y)-box 7##BC071947|SOX7|83595|SRY (sex determining region Y)-box 7##BC004299|SOX7|83595|SRY (sex determining region Y)-box 7##AK055556|SOX7|83595|SRY (sex determining region Y)-box 7##AK223574|SOX7|83595|SRY (sex determining region Y)-box 7##NM_031439|SOX7|83595|SRY (sex determining region Y)-box 7##AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9	0.999147	0.0	denovo_WM_7:15:0.739
chrX	149647279	149647421	reg1003551.p1	6.528	+	NM_001177466 NM_005491 U46023 BC136324 AB527434 AK315217	-33568	+	TSC_hg19_v1_chrX_+_149531583 NM_001177465 AK294478	-115788	+	TSC_hg19_v1_chrX_+_149529838 AK302612	-117517	+	TSC_hg19_v1_chrX_+_149737070 NM_000252 AK291710 U46024 AK297057 AK304036	89696	+	AL832715 AK297021 BC030779 TSC_hg19_v1_chrX_+_149737092	89754	+	TSC_hg19_v1_chrX_+_149861868 BC032947 NM_003828 AK226109 AF057354 AJ224979	214571	+	NM_001177466|MAMLD1|10046|mastermind-like domain containing 1##NM_005491|MAMLD1|10046|mastermind-like domain containing 1##U46023|MAMLD1|10046|mastermind-like domain containing 1##BC136324|MAMLD1|10046|mastermind-like domain containing 1##AK315217|MAMLD1|10046|mastermind-like domain containing 1##NM_001177465|MAMLD1|10046|mastermind-like domain containing 1##AK294478|MAMLD1|10046|mastermind-like domain containing 1##AK302612|MAMLD1|10046|mastermind-like domain containing 1##NM_000252|MTM1|4534|myotubularin 1##AK291710|MTM1|4534|myotubularin 1##U46024|MTM1|4534|myotubularin 1##AK297057|MTM1|4534|myotubularin 1##AK304036|MTM1|4534|myotubularin 1##AL832715|MTM1|4534|myotubularin 1##AK297021|MTM1|4534|myotubularin 1##BC030779|MTM1|4534|myotubularin 1##BC032947|MTMR1|8776|myotubularin related protein 1##NM_003828|MTMR1|8776|myotubularin related protein 1##AK226109|MTMR1|8776|myotubularin related protein 1##AF057354|MTMR1|8776|myotubularin related protein 1##AJ224979|MTMR1|8776|myotubularin related protein 1	0.020062	0.0	
chr4	48344651	48344790	reg1005552.p1	6.527	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	-1107	+	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	-1309	+	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	-72885	-	TSC_hg19_v1_chr4_+_48485353 AK126542 NM_152679 BC019066 BC012048 DQ892628 EU176704 AY704414	140707	+	TSC_hg19_v1_chr4_+_48492278 BC136265 AY191416 NM_175619	147561	+	TSC_hg19_v1_chr4_-_48782266 AL833444	437549	-	BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##AK126542|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##NM_152679|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##BC019066|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##BC012048|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##DQ892628|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##EU176704|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##AY704414|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##BC136265|ZAR1|326340|zygote arrest 1##AY191416|ZAR1|326340|zygote arrest 1##NM_175619|ZAR1|326340|zygote arrest 1##AL833444|FRYL|285527|FRY-like	0.995262	0.0	
chr22	40905878	40906033	reg1005169.p1	6.526	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-46525	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-139300	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-139314	+	TSC_hg19_v1_chr22_-_41032681 AF368061	126698	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	126749	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	169266	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	1.99709	0.0	denovo_WM_7:-30:0.389	denovo_WM_7:-32:0.388	denovo_WM_7:38:0.739
chr9	37566459	37566573	reg1006360.p2	6.526	+	TSC_hg19_v1_chr9_+_37485944 BC014331 AK023452 AK302345 AK303167 NM_022490 AK301347 AK024032 AK225050 BC017766 BC001337 CR457313 AK091294 AX746899	-80486	+	TSC_hg19_v1_chr9_-_37465448 AK292404	-101075	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	-101121	-	AF174598 AF176705 NM_012166 TSC_hg19_v1_chr9_-_37576280	9749	-	CR627326 AB435233 TSC_hg19_v1_chr9_-_37592574 BC034247	26003	-	TSC_hg19_v1_chr9_-_37592575 BC029423 NM_001001790 NM_001134484 NM_001134485	26089	-	BC014331|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK023452|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK302345|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK303167|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##NM_022490|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK301347|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK024032|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK225050|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC017766|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC001337|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##CR457313|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK091294|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK292404|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5##AF174598|FBXO10|26267|F-box protein 10##AF176705|FBXO10|26267|F-box protein 10##NM_012166|FBXO10|26267|F-box protein 10##AB435233|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC034247|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC029423|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001001790|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001134484|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001134485|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)	1.032456	0.0	denovo_WM_7:-49:0.307	denovo_WM_7:-50:0.307	denovo_WM_7:-51:0.307
chr7	12624696	12624800	reg1006254.p1	6.525	+	AB067492 NM_001112706 AK290363 AK075123 TSC_hg19_v1_chr7_+_12610346 BC021090 AB590413 DQ892033 DQ895224 AF276507	-14441	+	NM_001135924	-180897	-	TSC_hg19_v1_chr7_-_12443512 AK075525 BC144316 BC144319	-181216	-	AK027778 NM_033128	4399	+	TSC_hg19_v1_chr7_+_12726499 NM_001037164 NM_212460 BC039123 BC001111 BC003027	101738	+	NM_001195396 NM_005738	102162	+	AB067492|SCIN|85477|scinderin##NM_001112706|SCIN|85477|scinderin##AK290363|SCIN|85477|scinderin##AK075123|SCIN|85477|scinderin##BC021090|SCIN|85477|scinderin##DQ892033|SCIN|85477|scinderin##DQ895224|SCIN|85477|scinderin##AF276507|SCIN|85477|scinderin##NM_001135924|VWDE|221806|von Willebrand factor D and EGF domains##AK075525|VWDE|221806|von Willebrand factor D and EGF domains##BC144316|VWDE|221806|von Willebrand factor D and EGF domains##BC144319|VWDE|221806|von Willebrand factor D and EGF domains##AK027778|SCIN|85477|scinderin##NM_033128|SCIN|85477|scinderin##NM_001037164|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_212460|ARL4A|10124|ADP-ribosylation factor-like 4A##BC039123|ARL4A|10124|ADP-ribosylation factor-like 4A##BC001111|ARL4A|10124|ADP-ribosylation factor-like 4A##BC003027|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_001195396|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_005738|ARL4A|10124|ADP-ribosylation factor-like 4A	0.0	0.0	
chr11	75037666	75037806	reg1004631.p1	6.524	+	NM_001195528	-85787	+	FM209054 FM209053 AF205073 NM_001145211 AK294503	-166895	+	NM_001145212 NM_007256 FM209050 TSC_hg19_v1_chr11_+_74862151 AK304783 AK302492 AK290234 AK300134 AB020687 BC127254 BC041095 AB026256 AL117465	-175592	+	AF084040 AF084940 FJ348262 CU678548 AB462955 TSC_hg19_v1_chr11_-_75062708 AK289718 BC003636 NM_004041 NM_020251	25080	-	TSC_hg19_v1_chr11_+_75110562 D28344 AK130960 BC034149 NM_001005 AK129794 AK313051 BC013231 BC100284 X55715 BC071917 AK223048 BC003137 BC071669 S42658 AB464166 CU678394 DQ892888 DQ896136 U14990 U14991 U14992 BC003577 BC013196 AB062288	72839	+	HQ258227 BC132708 BC132710 TSC_hg19_v1_chr11_-_75141083 AK091109 AX746783	103324	-	NM_001195528|LOC100507050|100507050|uncharacterized LOC100507050##FM209053|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF205073|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145211|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK294503|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145212|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_007256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209050|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK304783|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK302492|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK290234|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK300134|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB020687|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC127254|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC041095|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB026256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AL117465|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF084040|ARRB1|408|arrestin, beta 1##AF084940|ARRB1|408|arrestin, beta 1##FJ348262|ARRB1|408|arrestin, beta 1##AK289718|ARRB1|408|arrestin, beta 1##BC003636|ARRB1|408|arrestin, beta 1##NM_004041|ARRB1|408|arrestin, beta 1##NM_020251|ARRB1|408|arrestin, beta 1##D28344|RPS3|6188|ribosomal protein S3##AK130960|RPS3|6188|ribosomal protein S3##BC034149|RPS3|6188|ribosomal protein S3##NM_001005|RPS3|6188|ribosomal protein S3##AK129794|RPS3|6188|ribosomal protein S3##AK313051|RPS3|6188|ribosomal protein S3##BC013231|RPS3|6188|ribosomal protein S3##BC100284|RPS3|6188|ribosomal protein S3##X55715|RPS3|6188|ribosomal protein S3##BC071917|RPS3|6188|ribosomal protein S3##AK223048|RPS3|6188|ribosomal protein S3##BC003137|RPS3|6188|ribosomal protein S3##BC071669|RPS3|6188|ribosomal protein S3##S42658|RPS3|6188|ribosomal protein S3##DQ892888|RPS3|6188|ribosomal protein S3##DQ896136|RPS3|6188|ribosomal protein S3##U14990|RPS3|6188|ribosomal protein S3##U14991|RPS3|6188|ribosomal protein S3##U14992|RPS3|6188|ribosomal protein S3##BC003577|RPS3|6188|ribosomal protein S3##BC013196|RPS3|6188|ribosomal protein S3##AB062288|RPS3|6188|ribosomal protein S3##HQ258227|KLHL35|283212|kelch-like 35 (Drosophila)##BC132708|KLHL35|283212|kelch-like 35 (Drosophila)##BC132710|KLHL35|283212|kelch-like 35 (Drosophila)##AK091109|KLHL35|283212|kelch-like 35 (Drosophila)	0.99253	0.0	
chr14	68715216	68715385	reg1005788.p2	6.524	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-428780	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-432001	-	AK315462 NM_152443	-546698	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	544420	-	NM_001244698 NM_004926	545330	-	NM_001244701 AB528867	547684	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	1.267933	0.708097	CTCF.p2:-6:0.708	denovo_WM_7:-40:0.205	denovo_WM_7:-104:0.947
chr17	61629197	61629377	reg1005285.p1	6.524	+	TSC_hg19_v1_chr17_+_61628000 DQ891233 DQ894417 AB590131	-1275	+	TSC_hg19_v1_chr17_+_61627929 U94747	-1343	+	TSC_hg19_v1_chr17_+_61627855 AK303212	-1423	+	TSC_hg19_v1_chr17_+_61678230 AK315375 NM_016360 AK094052 AX748431 BC005049	48945	+	TSC_hg19_v1_chr17_+_61678277 BC007744 CU675789	49072	+	TSC_hg19_v1_chr17_+_61699772 AX775739 AX775741 AK315305	70459	+	DQ891233|DCAF7|10238|DDB1 and CUL4 associated factor 7##DQ894417|DCAF7|10238|DDB1 and CUL4 associated factor 7##U94747|DCAF7|10238|DDB1 and CUL4 associated factor 7##AK303212|DCAF7|10238|DDB1 and CUL4 associated factor 7##AK315375|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##NM_016360|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AK094052|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##BC005049|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##BC007744|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AX775739|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AX775741|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AK315305|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3	2.032419	0.0	
chr19	11079031	11079211	reg1005840.p1	6.524	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-7297	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-7371	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-7406	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	15755	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	120956	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	121011	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	1.959344	0.0	denovo_WM_7:60:0.385	denovo_WM_7:62:0.598	denovo_WM_7:79:0.977
chr11	118069178	118069343	reg1005586.p1	6.523	+	NM_004588 TSC_hg19_v1_chr11_-_118047340	-21918	-	AF007783 BT019487 DQ892426 DQ892634 DQ895640 U87555 AY358945 BC036793 AF049498 AK308834 AK313891 TSC_hg19_v1_chr11_-_118047330	-22023	-	AY149967 AK314531 NM_001142348 NM_174934	-45679	-	AK094399 NM_153206	14813	-	AK090409 AY138965 AY358362 AY093686 AK298722 AK300851 AK301099 AJ515553 NM_001098526	26498	-	TSC_hg19_v1_chr11_-_118123036 HQ258603 AY358626 NM_198275 AK095399 AK289390 AK296951 BC031223 AK304292 AK310966 BC113586 BC143897	53790	-	NM_004588|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AF007783|SCN2B|6327|sodium channel, voltage-gated, type II, beta##BT019487|SCN2B|6327|sodium channel, voltage-gated, type II, beta##DQ892426|SCN2B|6327|sodium channel, voltage-gated, type II, beta##DQ892634|SCN2B|6327|sodium channel, voltage-gated, type II, beta##DQ895640|SCN2B|6327|sodium channel, voltage-gated, type II, beta##U87555|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AY358945|SCN2B|6327|sodium channel, voltage-gated, type II, beta##BC036793|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AF049498|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AK308834|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AK313891|SCN2B|6327|sodium channel, voltage-gated, type II, beta##AY149967|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##AK314531|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##NM_001142348|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##NM_174934|SCN4B|6330|sodium channel, voltage-gated, type IV, beta##AK094399|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##NM_153206|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK090409|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AY138965|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AY358362|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AY093686|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK298722|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK300851|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AK301099|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##AJ515553|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##NM_001098526|AMICA1|120425|adhesion molecule, interacts with CXADR antigen 1##HQ258603|MPZL3|196264|myelin protein zero-like 3##AY358626|MPZL3|196264|myelin protein zero-like 3##NM_198275|MPZL3|196264|myelin protein zero-like 3##AK095399|MPZL3|196264|myelin protein zero-like 3##AK289390|MPZL3|196264|myelin protein zero-like 3##AK296951|MPZL3|196264|myelin protein zero-like 3##BC031223|MPZL3|196264|myelin protein zero-like 3##AK304292|MPZL3|196264|myelin protein zero-like 3##AK310966|MPZL3|196264|myelin protein zero-like 3##BC113586|MPZL3|196264|myelin protein zero-like 3##BC143897|MPZL3|196264|myelin protein zero-like 3	0.882111	0.99351	CTCF.p2:-78:0.994	denovo_WM_7:102:0.882
chr6	38743813	38743991	reg1006615.p2	6.523	+	AF527621 NM_001206927	-60786	+	TSC_hg19_v1_chr6_-_38670922 NM_006708	-72965	-	AK312662 TSC_hg19_v1_chr6_-_38670921	-72982	-	BC112126 BC113493 NM_002062 TSC_hg19_v1_chr6_+_39016556 U01104 L23503 AB463688 U01156 U01157	272684	+	AF086405 TSC_hg19_v1_chr6_-_39072506	328557	-	TSC_hg19_v1_chr6_-_39082938 CR627244 AK001963 NM_018322 EU832483 EU832563 BC022007	338944	-	AF527621|DNAH8|1769|dynein, axonemal, heavy chain 8##NM_001206927|DNAH8|1769|dynein, axonemal, heavy chain 8##NM_006708|GLO1|2739|glyoxalase I##AK312662|GLO1|2739|glyoxalase I##BC112126|GLP1R|2740|glucagon-like peptide 1 receptor##BC113493|GLP1R|2740|glucagon-like peptide 1 receptor##NM_002062|GLP1R|2740|glucagon-like peptide 1 receptor##U01104|GLP1R|2740|glucagon-like peptide 1 receptor##L23503|GLP1R|2740|glucagon-like peptide 1 receptor##U01156|GLP1R|2740|glucagon-like peptide 1 receptor##U01157|GLP1R|2740|glucagon-like peptide 1 receptor##AF086405|C6orf64|55776|chromosome 6 open reading frame 64##CR627244|C6orf64|55776|chromosome 6 open reading frame 64##AK001963|C6orf64|55776|chromosome 6 open reading frame 64##NM_018322|C6orf64|55776|chromosome 6 open reading frame 64##EU832483|C6orf64|55776|chromosome 6 open reading frame 64##EU832563|C6orf64|55776|chromosome 6 open reading frame 64##BC022007|C6orf64|55776|chromosome 6 open reading frame 64	0.996984	0.0	denovo_WM_7:99:0.449	denovo_WM_7:100:0.449
chr7	73050685	73050846	reg1006908.p2	6.523	+	TSC_hg19_v1_chr7_-_73038853 AF245470 AF245471 AF245472 AF245473 AF245474 AB527610 BC012925 AF156603 NM_032951 NM_032952 NM_032953 NM_032954	-11895	-	TSC_hg19_v1_chr7_-_72993012 NM_012453	-57740	-	TSC_hg19_v1_chr7_-_72992936 BC047354 AL080162	-57803	-	TSC_hg19_v1_chr7_+_73082160 AY081952 BC029730 NM_001077621	31449	+	TSC_hg19_v1_chr7_+_73082320 BC064621	31558	+	TSC_hg19_v1_chr7_-_73097770 AK303989 CU674979 AK058113 AF412025 BC005056 AK094305 NM_032317	46993	-	AF245470|MLXIPL|51085|MLX interacting protein-like##AF245471|MLXIPL|51085|MLX interacting protein-like##AF245472|MLXIPL|51085|MLX interacting protein-like##AF245473|MLXIPL|51085|MLX interacting protein-like##AF245474|MLXIPL|51085|MLX interacting protein-like##BC012925|MLXIPL|51085|MLX interacting protein-like##AF156603|MLXIPL|51085|MLX interacting protein-like##NM_032951|MLXIPL|51085|MLX interacting protein-like##NM_032952|MLXIPL|51085|MLX interacting protein-like##NM_032953|MLXIPL|51085|MLX interacting protein-like##NM_032954|MLXIPL|51085|MLX interacting protein-like##NM_012453|TBL2|26608|transducin (beta)-like 2##BC047354|TBL2|26608|transducin (beta)-like 2##AL080162|TBL2|26608|transducin (beta)-like 2##AY081952|VPS37D|155382|vacuolar protein sorting 37 homolog D (S. cerevisiae)##BC029730|VPS37D|155382|vacuolar protein sorting 37 homolog D (S. cerevisiae)##NM_001077621|VPS37D|155382|vacuolar protein sorting 37 homolog D (S. cerevisiae)##BC064621|VPS37D|155382|vacuolar protein sorting 37 homolog D (S. cerevisiae)##AK058113|DNAJC30|84277|DnaJ (Hsp40) homolog, subfamily C, member 30##AF412025|DNAJC30|84277|DnaJ (Hsp40) homolog, subfamily C, member 30##BC005056|DNAJC30|84277|DnaJ (Hsp40) homolog, subfamily C, member 30##AK094305|DNAJC30|84277|DnaJ (Hsp40) homolog, subfamily C, member 30##NM_032317|DNAJC30|84277|DnaJ (Hsp40) homolog, subfamily C, member 30	0.997616	0.0	denovo_WM_7:-18:0.817
chr15	75164754	75164863	reg1006058.p1	6.522	+	TSC_hg19_v1_chr15_-_75135524 BC157884 NM_001099436 AL117482	-29203	-	TSC_hg19_v1_chr15_-_75135498 AK293181 BC036117	-29308	-	BC048289 TSC_hg19_v1_chr15_-_75135479	-29329	-	CR456800 AF005038 TSC_hg19_v1_chr15_-_75165693 AK315516 BC001376 BC004385 NM_005697 AK096794 AK096376 AK291884	847	-	TSC_hg19_v1_chr15_+_75182388 AK294030 AK301370 AK302354 BX648475 AF504648 AK225149 BC046357 AK292374 BC017351 NM_002435 X76057 CU692334 AB529030	17584	+	AK025373 TSC_hg19_v1_chr15_-_75194610	29768	-	BC157884|ULK3|25989|unc-51-like kinase 3 (C. elegans)##NM_001099436|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AL117482|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AK293181|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC036117|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC048289|ULK3|25989|unc-51-like kinase 3 (C. elegans)##CR456800|SCAMP2|10066|secretory carrier membrane protein 2##AF005038|SCAMP2|10066|secretory carrier membrane protein 2##AK315516|SCAMP2|10066|secretory carrier membrane protein 2##BC001376|SCAMP2|10066|secretory carrier membrane protein 2##BC004385|SCAMP2|10066|secretory carrier membrane protein 2##NM_005697|SCAMP2|10066|secretory carrier membrane protein 2##AK096794|SCAMP2|10066|secretory carrier membrane protein 2##AK096376|SCAMP2|10066|secretory carrier membrane protein 2##AK291884|SCAMP2|10066|secretory carrier membrane protein 2##AK294030|MPI|4351|mannose phosphate isomerase##AK301370|MPI|4351|mannose phosphate isomerase##AK302354|MPI|4351|mannose phosphate isomerase##BX648475|MPI|4351|mannose phosphate isomerase##AF504648|MPI|4351|mannose phosphate isomerase##AK225149|MPI|4351|mannose phosphate isomerase##BC046357|MPI|4351|mannose phosphate isomerase##AK292374|MPI|4351|mannose phosphate isomerase##BC017351|MPI|4351|mannose phosphate isomerase##NM_002435|MPI|4351|mannose phosphate isomerase##X76057|MPI|4351|mannose phosphate isomerase##AK025373|C15orf17|57184|chromosome 15 open reading frame 17	0.998338	0.0	denovo_WM_7:-45:0.457	denovo_WM_7:-46:0.457
chr19	11428473	11428578	reg1004022.p1	6.522	+	AF133424 NM_012466 BC029908	-21692	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-55387	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-78229	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	21775	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	28408	-	TSC_hg19_v1_chr19_+_11457194 NM_001080503 AK301653 AK316339 AK303641	28667	+	NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205##NM_001080503|CCDC159|126075|coiled-coil domain containing 159##AK301653|CCDC159|126075|coiled-coil domain containing 159##AK316339|CCDC159|126075|coiled-coil domain containing 159##AK303641|CCDC159|126075|coiled-coil domain containing 159	0.99391	0.0	denovo_WM_7:-19:0.981
chr3	53347441	53347568	reg1006633.p1	6.522	+	TSC_hg19_v1_chr3_-_53290099 NM_001064 NM_001135055	-57390	-	U55017 CU679545 DQ893078 EU176764 TSC_hg19_v1_chr3_-_53290039 AK309482 AK289454 X67688 BX647248 BC009970 BC002433 AK093667 AK223614 AK293438 AK301231 AK303191 AX748252 L12711	-57493	-	BC043350 TSC_hg19_v1_chr3_+_53195224 NM_006254 NM_212539	-152285	+	TSC_hg19_v1_chr3_-_53381571 AB590177 CU675659 DQ893260 DQ896589 BC007439 AK295205 AB075507 AK001969 AY146651 AJ275986 NM_018403	34089	-	TSC_hg19_v1_chr3_+_53528709 M76558	181155	+	NM_000720 NM_001128839 NM_001128840 M83566 EU363339	181607	+	NM_001064|TKT|7086|transketolase##NM_001135055|TKT|7086|transketolase##U55017|TKT|7086|transketolase##DQ893078|TKT|7086|transketolase##EU176764|TKT|7086|transketolase##AK309482|TKT|7086|transketolase##AK289454|TKT|7086|transketolase##X67688|TKT|7086|transketolase##BX647248|TKT|7086|transketolase##BC009970|TKT|7086|transketolase##BC002433|TKT|7086|transketolase##AK093667|TKT|7086|transketolase##AK223614|TKT|7086|transketolase##AK293438|TKT|7086|transketolase##AK301231|TKT|7086|transketolase##AK303191|TKT|7086|transketolase##L12711|TKT|7086|transketolase##BC043350|PRKCD|5580|protein kinase C, delta##NM_006254|PRKCD|5580|protein kinase C, delta##NM_212539|PRKCD|5580|protein kinase C, delta##DQ893260|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##DQ896589|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##BC007439|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK295205|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AB075507|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK001969|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AY146651|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AJ275986|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018403|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##M76558|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_000720|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128839|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128840|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M83566|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##EU363339|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit	0.997498	0.0	denovo_WM_7:-46:0.976
chr7	26207075	26207220	reg1006295.p1	6.522	+	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	-15214	+	AB040290 AF330057 AF440392 NM_022150	-939067	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-987276	-	TSC_hg19_v1_chr7_-_26232151 BX538099	25004	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	33194	-	TSC_hg19_v1_chr7_-_26240364 AK129839 AK289429	33217	-	NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##AK129839|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##AK289429|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.485935	0.112939	denovo_WM_7:4:0.280
chr9	97097035	97097158	reg1006141.p1	6.522	+	HQ258506 BC130390 BC143798 NM_017561	-6182	-	TSC_hg19_v1_chr9_+_97021599 NM_194320 AK289742 AK093956	-75506	+	TSC_hg19_v1_chr9_+_96846806 AK124912	-250282	+	TSC_hg19_v1_chr9_+_97136850 NM_032558	39737	+	CR536483 HQ258389 BC113632 BC117477 NM_003837 Y10812	258944	-	AF073475 CU680450 D26054 D26055 D26056 AY544122 TSC_hg19_v1_chr9_-_97401681	304540	-	HQ258506|FAM22F|54754|family with sequence similarity 22, member F##BC130390|FAM22F|54754|family with sequence similarity 22, member F##BC143798|FAM22F|54754|family with sequence similarity 22, member F##NM_017561|FAM22F|54754|family with sequence similarity 22, member F##NM_194320|ZNF169|169841|zinc finger protein 169##AK289742|ZNF169|169841|zinc finger protein 169##AK093956|ZNF169|169841|zinc finger protein 169##AK124912|PTPDC1|138639|protein tyrosine phosphatase domain containing 1##NM_032558|HIATL1|84641|hippocampus abundant transcript-like 1##CR536483|FBP2|8789|fructose-1,6-bisphosphatase 2##HQ258389|FBP2|8789|fructose-1,6-bisphosphatase 2##BC113632|FBP2|8789|fructose-1,6-bisphosphatase 2##BC117477|FBP2|8789|fructose-1,6-bisphosphatase 2##NM_003837|FBP2|8789|fructose-1,6-bisphosphatase 2##Y10812|FBP2|8789|fructose-1,6-bisphosphatase 2##AF073475|FBP1|2203|fructose-1,6-bisphosphatase 1##D26054|FBP1|2203|fructose-1,6-bisphosphatase 1##D26055|FBP1|2203|fructose-1,6-bisphosphatase 1##D26056|FBP1|2203|fructose-1,6-bisphosphatase 1##AY544122|FBP1|2203|fructose-1,6-bisphosphatase 1	0.997335	0.0	denovo_WM_7:54:0.884
chr11	128589079	128589252	reg1006651.p2	6.521	+	TSC_hg19_v1_chr11_+_128564132 AB385119 AY029368 CU674822 DQ892582 DQ896858	-25023	+	TSC_hg19_v1_chr11_+_128563997 X67001 S45205 BC010115 BC001670	-25110	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	-25185	+	BC136360 BC136361 BC074752 NM_000220 U12541 AK314267 AK290797	123213	-	U12544 U12545 AK308032 U12543 U03884 AK308033 BC063109 NM_153764 NM_153765 NM_153766 NM_153767 U12542	148034	-	AK312837 NM_000890 D50134 BC069386 BC069482 BC069499 BC069571 U39195	172175	+	AY029368|FLI1|2313|Friend leukemia virus integration 1##DQ892582|FLI1|2313|Friend leukemia virus integration 1##DQ896858|FLI1|2313|Friend leukemia virus integration 1##X67001|FLI1|2313|Friend leukemia virus integration 1##S45205|FLI1|2313|Friend leukemia virus integration 1##BC010115|FLI1|2313|Friend leukemia virus integration 1##BC001670|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1##BC136360|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC136361|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC074752|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_000220|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12541|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK314267|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK290797|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12544|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12545|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308032|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12543|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U03884|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308033|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC063109|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153764|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153765|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153766|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153767|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12542|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK312837|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##NM_000890|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##D50134|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069386|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069482|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069499|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069571|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##U39195|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5	0.998143	0.0	denovo_WM_7:15:0.840
chr16	85343467	85343620	reg1006714.p1	6.520	+	BC093665 BC111944 AK126284 NM_198491	-197489	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-282173	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-298414	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	301478	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	303410	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	378999	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.957441	0.0	denovo_WM_7:10:0.809
chr2	199162246	199162373	reg1005700.p1	6.520	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	-492939	+	NM_197970 AK302817	-511323	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-512269	-	TSC_hg19_v1_chr2_-_200213802 AK025127	1051541	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	1158493	-	TSC_hg19_v1_chr2_-_200322238 AJ438951	1159941	-	AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2##AJ438951|SATB2|23314|SATB homeobox 2	0.999877	0.0	denovo_WM_7:24:0.295	denovo_WM_7:25:0.295	denovo_WM_7:26:0.295
chr8	141519402	141519582	reg1004102.p1	6.520	+	AK128755 NM_031466	-50815	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	-51634	-	AB067469 TSC_hg19_v1_chr8_-_141467841	-51667	-	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	1900	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	2071	+	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	126132	-	AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2	0.996608	0.0	
chr15	55582717	55582887	reg1003449.p1	6.519	+	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	-811	-	BC132800 BC136423 BC107680 NM_183236	-19704	-	AF125393 NM_183234 U57094 U38654 NM_004580	-20265	-	NM_004855 AK293666 AK314706 BC017711	28361	+	TSC_hg19_v1_chr15_-_55611322 AB593170	28538	-	D42138 TSC_hg19_v1_chr15_+_55611429 AK223330	28622	+	AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family##BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004855|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK293666|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK314706|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##BC017711|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##D42138|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK223330|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B	0.0	0.214378	CTCF.p2:21:0.214
chr8	56836579	56836751	reg1005759.p1	6.519	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-44145	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-44270	+	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	-44300	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	150421	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	189875	-	TSC_hg19_v1_chr8_-_57123833 U65002	287170	-	AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1	1.873615	0.0	denovo_WM_7:-32:0.213	denovo_WM_7:-34:0.411	denovo_WM_7:-37:0.218	denovo_WM_7:-49:0.411	denovo_WM_7:-52:0.334
chr5	74532827	74532946	reg1006420.p1	6.518	+	AK097510 NM_001164443	-184	-	AF132035 NM_016591	-206163	-	AB020695 NM_015566 AK290004	-370248	-	NM_000859 NM_001130996 TSC_hg19_v1_chr5_+_74633004	100118	+	TSC_hg19_v1_chr5_+_74633022 BC024180	100143	+	TSC_hg19_v1_chr5_+_74633061 AK299655 BC033692 AK292892	100166	+	AK097510|ANKRD31|256006|ankyrin repeat domain 31##NM_001164443|ANKRD31|256006|ankyrin repeat domain 31##AF132035|GCNT4|51301|glucosaminyl (N-acetyl) transferase 4, core 2##NM_016591|GCNT4|51301|glucosaminyl (N-acetyl) transferase 4, core 2##AB020695|FAM169A|26049|family with sequence similarity 169, member A##NM_015566|FAM169A|26049|family with sequence similarity 169, member A##AK290004|FAM169A|26049|family with sequence similarity 169, member A##NM_000859|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##NM_001130996|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##BC024180|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##AK299655|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##BC033692|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase##AK292892|HMGCR|3156|3-hydroxy-3-methylglutaryl-CoA reductase	0.0	0.0	
chr17	62981924	62982045	reg1005697.p2	6.517	+	TSC_hg19_v1_chr17_-_62971685 BX537538 AK056627 BC063466 AK311317	-10364	-	TSC_hg19_v1_chr17_-_62915587 AK294371	-66388	-	AB011135 NM_199340	-67082	-	TSC_hg19_v1_chr17_-_63009302 AK026902	27322	-	TSC_hg19_v1_chr17_-_63052724 AB528470 AF493902 CU691408 DQ893572 DQ894448 AK313672	70734	-	TSC_hg19_v1_chr17_-_63052756 L22075 BC036756	70776	-	BX537538|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK056627|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##BC063466|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK311317|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AB011135|LRRC37A3|374819|leucine rich repeat containing 37, member A3##NM_199340|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AK026902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AF493902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ893572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ894448|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AK313672|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##L22075|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC036756|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13	0.89896	0.0	denovo_WM_7:-4:0.685
chr3	69292140	69292251	reg1005582.p1	6.517	+	AM393202 BC121019 BC017925 AL832033 AK300096 AL832709 BC039202 NM_198271	-120555	-	TSC_hg19_v1_chr3_+_69134171 NM_006407 AF070523 AF115965 AF125530 AB097051 AF161476 AK301637 AK303148 AK074612 BC005143 BC107899 BC020797 AB014765 AK223566 AK312731 AB052638 AY102608	-158068	+	TSC_hg19_v1_chr3_-_69129517 AB463332 AM392893 AM393088 CR533537 CU692738 DQ893167 DQ896465 AK314751 AK289392 AK002159 AL117566 BC022853 NM_003968 NM_198195 AK298878 AK316540	-162672	-	TSC_hg19_v1_chr3_-_69299315 AK295045	7115	-	AB023230 TSC_hg19_v1_chr3_-_69435240	143036	-	NM_015123 BC057836	143246	-	AM393202|LMOD3|56203|leiomodin 3 (fetal)##BC121019|LMOD3|56203|leiomodin 3 (fetal)##BC017925|LMOD3|56203|leiomodin 3 (fetal)##AL832033|LMOD3|56203|leiomodin 3 (fetal)##AK300096|LMOD3|56203|leiomodin 3 (fetal)##AL832709|LMOD3|56203|leiomodin 3 (fetal)##BC039202|LMOD3|56203|leiomodin 3 (fetal)##NM_198271|LMOD3|56203|leiomodin 3 (fetal)##NM_006407|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF070523|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF115965|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF125530|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AB097051|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF161476|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK301637|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK074612|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##BC005143|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##BC107899|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##BC020797|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AB014765|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK223566|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK312731|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AB052638|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AY102608|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AM392893|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AM393088|UBA3|9039|ubiquitin-like modifier activating enzyme 3##CR533537|UBA3|9039|ubiquitin-like modifier activating enzyme 3##DQ893167|UBA3|9039|ubiquitin-like modifier activating enzyme 3##DQ896465|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK314751|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK289392|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK002159|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AL117566|UBA3|9039|ubiquitin-like modifier activating enzyme 3##BC022853|UBA3|9039|ubiquitin-like modifier activating enzyme 3##NM_003968|UBA3|9039|ubiquitin-like modifier activating enzyme 3##NM_198195|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK298878|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK316540|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK295045|FRMD4B|23150|FERM domain containing 4B##AB023230|FRMD4B|23150|FERM domain containing 4B##NM_015123|FRMD4B|23150|FERM domain containing 4B##BC057836|FRMD4B|23150|FERM domain containing 4B	0.999216	0.0	denovo_WM_7:-38:0.239	denovo_WM_7:-39:0.239	denovo_WM_7:-40:0.239	denovo_WM_7:-41:0.239
chr7	19794252	19794377	reg1007667.p1	6.517	+	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-45668	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-609301	-	TSC_hg19_v1_chr7_-_19157262 BC036704 NM_000474	-637036	-	BX648384 NM_152774	18089	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	462666	-	AK295044 TSC_hg19_v1_chr7_+_20370337	576023	+	HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC036704|TWIST1|7291|twist homolog 1 (Drosophila)##NM_000474|TWIST1|7291|twist homolog 1 (Drosophila)##BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8	0.990846	0.047518	denovo_WM_7:-15:0.896
chr8	141442192	141442346	reg1006263.p1	6.517	+	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	-726987	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	-1516025	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	-1933163	-	AB067469 TSC_hg19_v1_chr8_-_141467841	25556	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	25589	-	AK128755 NM_031466	26408	-	AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9	0.0	0.0	
chr3	179150068	179150187	reg1003931.p2	6.516	+	BC040557 NM_033540 TSC_hg19_v1_chr3_+_179065522 BC020661 AB043589 AK000700 AK314306	-84613	+	AB097862 AF003924 NM_016331	-108577	+	TSC_hg19_v1_chr3_+_179040818 BC026181	-109261	+	BC000873 TSC_hg19_v1_chr3_-_179169227 AK297174	19117	-	TSC_hg19_v1_chr3_-_179169361 AK001890 NM_021629	19238	-	TSC_hg19_v1_chr3_+_179280713 AB060168 NM_004301 NM_177989 NM_178042 AK098691 BC000949 AL136608 BC036371	130582	+	BC040557|MFN1|55669|mitofusin 1##NM_033540|MFN1|55669|mitofusin 1##BC020661|MFN1|55669|mitofusin 1##AB043589|MFN1|55669|mitofusin 1##AK000700|MFN1|55669|mitofusin 1##AK314306|MFN1|55669|mitofusin 1##AB097862|ZNF639|51193|zinc finger protein 639##AF003924|ZNF639|51193|zinc finger protein 639##NM_016331|ZNF639|51193|zinc finger protein 639##BC026181|ZNF639|51193|zinc finger protein 639##BC000873|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK297174|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK001890|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##NM_021629|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AB060168|ACTL6A|86|actin-like 6A##NM_004301|ACTL6A|86|actin-like 6A##NM_177989|ACTL6A|86|actin-like 6A##NM_178042|ACTL6A|86|actin-like 6A##AK098691|ACTL6A|86|actin-like 6A##BC000949|ACTL6A|86|actin-like 6A##AL136608|ACTL6A|86|actin-like 6A##BC036371|ACTL6A|86|actin-like 6A	0.366002	0.0	denovo_WM_7:7:0.350
chr10	97579424	97579573	reg1006664.p1	6.515	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-63958	+	AJ133133 AJ133134 NM_001098175	-107963	+	BC068449 DQ278872 NM_001143973 NM_015631	-125599	-	AK294399 NM_001130446	88223	+	NM_001001732 NM_001159747 AK302377 BC075861	180366	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	223883	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.057062	0.0	
chr12	110411433	110411552	reg1006011.p2	6.515	+	AY007230 NM_032300 BC022838	-73121	+	TSC_hg19_v1_chr12_+_110338090 AK092736 AX747696 NM_001143852 BC004285 AK301262	-73390	+	AY372530 AY372531 CU679533 AK313457 AF209704 TSC_hg19_v1_chr12_-_110318304 AY372532 BC009932 NM_016433	-93214	-	AB451294 AB451428 AF124491 AK303198 BT007312 CR533568 AB385285 TSC_hg19_v1_chr12_-_110434050	22547	-	TSC_hg19_v1_chr12_-_110434107 BC001379 D63482 AK222736 AK308304	22590	-	AK304240 TSC_hg19_v1_chr12_-_110434185	22689	-	AY007230|TCHP|84260|trichoplein, keratin filament binding##NM_032300|TCHP|84260|trichoplein, keratin filament binding##BC022838|TCHP|84260|trichoplein, keratin filament binding##AK092736|TCHP|84260|trichoplein, keratin filament binding##NM_001143852|TCHP|84260|trichoplein, keratin filament binding##BC004285|TCHP|84260|trichoplein, keratin filament binding##AK301262|TCHP|84260|trichoplein, keratin filament binding##AY372530|GLTP|51228|glycolipid transfer protein##AY372531|GLTP|51228|glycolipid transfer protein##AK313457|GLTP|51228|glycolipid transfer protein##AF209704|GLTP|51228|glycolipid transfer protein##AY372532|GLTP|51228|glycolipid transfer protein##BC009932|GLTP|51228|glycolipid transfer protein##NM_016433|GLTP|51228|glycolipid transfer protein##AB451294|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##AB451428|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##AF124491|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##AK303198|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##BT007312|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##CR533568|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##BC001379|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##D63482|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##AK222736|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##AK308304|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2##AK304240|GIT2|9815|G protein-coupled receptor kinase interacting ArfGAP 2	0.828483	0.0	denovo_WM_7:27:0.680
chr15	44959060	44959226	reg1006120.p1	6.515	+	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	-3263	-	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	-3299	-	TSC_hg19_v1_chr15_+_44829374 AK300659	-129761	+	BC036924 NM_001145112	9942	-	AK130783 TSC_hg19_v1_chr15_-_45003540	44403	-	TSC_hg19_v1_chr15_+_45003710 NM_004048 AK303560 AK315776 S82297 S82300 S54761 BC032589 BC064910 X07621 AY007153 AB021288 AB463439 AY187687 CR457066 DQ839493 DQ839494 DQ884406 DQ890551 DQ893711 V00567	44578	+	BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_004048|B2M|567|beta-2-microglobulin##AK303560|B2M|567|beta-2-microglobulin##AK315776|B2M|567|beta-2-microglobulin##S82297|B2M|567|beta-2-microglobulin##S82300|B2M|567|beta-2-microglobulin##S54761|B2M|567|beta-2-microglobulin##BC032589|B2M|567|beta-2-microglobulin##BC064910|B2M|567|beta-2-microglobulin##X07621|B2M|567|beta-2-microglobulin##AY007153|B2M|567|beta-2-microglobulin##AB021288|B2M|567|beta-2-microglobulin##AY187687|B2M|567|beta-2-microglobulin##CR457066|B2M|567|beta-2-microglobulin##DQ839493|B2M|567|beta-2-microglobulin##DQ839494|B2M|567|beta-2-microglobulin##DQ884406|B2M|567|beta-2-microglobulin##DQ890551|B2M|567|beta-2-microglobulin##DQ893711|B2M|567|beta-2-microglobulin##V00567|B2M|567|beta-2-microglobulin	0.0	0.0	
chr10	51862323	51862482	reg1004971.p1	6.514	+	NM_018232	-24517	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-34680	+	TSC_hg19_v1_chr10_+_51827685 BC150611 AK001686 NM_001005751 AK295129	-34722	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	145938	-	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	521301	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	637308	+	NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##BC150611|FAM21C|253725|family with sequence similarity 21, member C##AK001686|FAM21A|387680|family with sequence similarity 21, member A##NM_001005751|FAM21A|387680|family with sequence similarity 21, member A##AK295129|FAM21A|387680|family with sequence similarity 21, member A##AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B	0.996052	0.0	denovo_WM_7:27:0.928
chr12	112547350	112547441	reg1005975.p2	6.514	+	TSC_hg19_v1_chr12_-_112546588 BC065481 AB054990 AK309772 AK307494 BC095484 BX647450 BC034357 BX641140 AK292485 BC113585 BC113587 NM_024953	-797	-	X94910 TSC_hg19_v1_chr12_+_112451266 CR541667	-96130	+	TSC_hg19_v1_chr12_+_112451229 AK309426	-96165	+	TSC_hg19_v1_chr12_+_112563341 AK309916 AK312601 NM_001143906 NM_006700	15927	+	TSC_hg19_v1_chr12_+_112563363 AK122620 AK291331 AK295474 AB007447	15996	+	TSC_hg19_v1_chr12_-_112630525 AF174498	83133	-	BC065481|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AB054990|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK309772|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK307494|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC095484|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX647450|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC034357|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX641140|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK292485|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113585|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113587|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##NM_024953|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##X94910|ERP29|10961|endoplasmic reticulum protein 29##CR541667|ERP29|10961|endoplasmic reticulum protein 29##AK309916|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK312601|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_001143906|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_006700|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK122620|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK291331|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK295474|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AB007447|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AF174498|C12orf51|283450|chromosome 12 open reading frame 51	0.990878	0.0	
chr12	739250	739419	reg1006686.p1	6.513	+	AB089940 NM_173593	-169792	+	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	-228553	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-240732	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	12844	+	TSC_hg19_v1_chr12_-_752800 AK298043	13485	-	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	33381	-	AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2	0.331318	0.0	
chr13	100072668	100072822	reg1005734.p1	6.513	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-113047	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-162131	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-219626	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	80955	+	TSC_hg19_v1_chr13_+_100153777 BC130293	81037	+	BC041830 TSC_hg19_v1_chr13_+_100229390	156632	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.895165	0.0	denovo_WM_7:-12:0.773
chr19	44267606	44267753	reg1006366.p2	6.513	+	TSC_hg19_v1_chr19_-_44259117 NM_019108	-8551	-	TSC_hg19_v1_chr19_-_44259074 AK022948	-8586	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	-8659	-	AB128983 AB128984 AB128985 AF000972 AF022150 BT007426 CU677271 DQ891493 DQ894684 BC015337 AF395661 TSC_hg19_v1_chr19_-_44285137 AF033021	17396	-	TSC_hg19_v1_chr19_-_44285437 AF022797 NM_002250	17761	-	CU691254 AY358719 BC057816 AK301693 NM_001031749	38889	-	NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB128983|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128984|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128985|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF000972|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022150|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BT007426|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ891493|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ894684|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BC015337|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF395661|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF033021|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022797|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##NM_002250|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AY358719|LYPD5|284348|LY6/PLAUR domain containing 5##BC057816|LYPD5|284348|LY6/PLAUR domain containing 5##AK301693|LYPD5|284348|LY6/PLAUR domain containing 5##NM_001031749|LYPD5|284348|LY6/PLAUR domain containing 5	0.010034	0.0	
chr2	198017885	198018065	reg1006293.p2	6.513	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-226531	-	BC137150 BC137151 AY358249 NM_213608	-343038	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-353562	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	157407	-	TSC_hg19_v1_chr2_-_198175459 BC063622	157498	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	157544	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	1.026568	0.0	
chr22	31102209	31102389	reg1006504.p2	6.513	+	AF323731 NM_030758 AK097581 AK294007 BC118914 AB051451 AB384622 AF288741	-11454	+	BC031973 TSC_hg19_v1_chr22_+_31063955	-38365	+	TSC_hg19_v1_chr22_-_31063837 BC030987 BC028724 AF461689 AK056074 NM_152511	-38464	-	AB020659 NM_014941	261887	-	AK056480 TSC_hg19_v1_chr22_+_31366813	264438	+	TSC_hg19_v1_chr22_+_31477303 NM_006932 NM_134269 NM_134270 AK128719 AF064238 AJ010306 AY061971 AY061972 Y13492 AK096953 AK293681 BC034237 AK300854	374983	+	AF323731|OSBP2|23762|oxysterol binding protein 2##NM_030758|OSBP2|23762|oxysterol binding protein 2##AK097581|OSBP2|23762|oxysterol binding protein 2##AK294007|OSBP2|23762|oxysterol binding protein 2##BC118914|OSBP2|23762|oxysterol binding protein 2##AB051451|OSBP2|23762|oxysterol binding protein 2##AF288741|OSBP2|23762|oxysterol binding protein 2##BC030987|DUSP18|150290|dual specificity phosphatase 18##BC028724|DUSP18|150290|dual specificity phosphatase 18##AF461689|DUSP18|150290|dual specificity phosphatase 18##AK056074|DUSP18|150290|dual specificity phosphatase 18##NM_152511|DUSP18|150290|dual specificity phosphatase 18##AB020659|MORC2|22880|MORC family CW-type zinc finger 2##NM_014941|MORC2|22880|MORC family CW-type zinc finger 2##NM_006932|SMTN|6525|smoothelin##NM_134269|SMTN|6525|smoothelin##NM_134270|SMTN|6525|smoothelin##AK128719|SMTN|6525|smoothelin##AF064238|SMTN|6525|smoothelin##AJ010306|SMTN|6525|smoothelin##AY061971|SMTN|6525|smoothelin##AY061972|SMTN|6525|smoothelin##Y13492|SMTN|6525|smoothelin##AK096953|SMTN|6525|smoothelin##AK293681|SMTN|6525|smoothelin##BC034237|SMTN|6525|smoothelin##AK300854|SMTN|6525|smoothelin	0.936501	0.0	denovo_WM_7:30:0.870
chr3	101426325	101426505	reg1006899.p2	6.512	+	CR456729 TSC_hg19_v1_chr3_-_101405541 BC070193 BC000690 M94314 AK311992 NM_000986	-20933	-	TSC_hg19_v1_chr3_-_101395977 BC111700 U69274 BC028062 AK312859 NM_014415	-30595	-	TSC_hg19_v1_chr3_+_101395318 BC016930	-31104	+	AK309806 AL833269 BC041085 NM_024548 AK294784	17052	+	NM_145037 TSC_hg19_v1_chr3_+_101498054	71633	+	TSC_hg19_v1_chr3_+_101498080 BC009431	71673	+	CR456729|RPL24|6152|ribosomal protein L24##BC070193|RPL24|6152|ribosomal protein L24##BC000690|RPL24|6152|ribosomal protein L24##M94314|RPL24|6152|ribosomal protein L24##AK311992|RPL24|6152|ribosomal protein L24##NM_000986|RPL24|6152|ribosomal protein L24##BC111700|ZBTB11|27107|zinc finger and BTB domain containing 11##U69274|ZBTB11|27107|zinc finger and BTB domain containing 11##BC028062|ZBTB11|27107|zinc finger and BTB domain containing 11##AK312859|ZBTB11|27107|zinc finger and BTB domain containing 11##NM_014415|ZBTB11|27107|zinc finger and BTB domain containing 11##BC016930|LOC100009676|100009676|uncharacterized LOC100009676##AK309806|CEP97|79598|centrosomal protein 97kDa##AL833269|CEP97|79598|centrosomal protein 97kDa##BC041085|CEP97|79598|centrosomal protein 97kDa##NM_024548|CEP97|79598|centrosomal protein 97kDa##AK294784|CEP97|79598|centrosomal protein 97kDa##NM_145037|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C	0.998477	0.0	denovo_WM_7:7:0.457	denovo_WM_7:8:0.457
chr6	149802424	149802556	reg1006763.p1	6.512	+	AY340238 NM_001002255 BC130305 HQ258040	-80982	+	AK315038 NM_015093 AK307650	-163049	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	-163387	+	TSC_hg19_v1_chr6_-_149806031 AK127932	3577	-	TSC_hg19_v1_chr6_-_149806151 AB458221 AB458222 BC157832 NM_207360	3653	-	TSC_hg19_v1_chr6_-_149867153 CU676802 GQ129364 GQ129365 BC064134	64654	-	AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK127932|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458221|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458222|ZC3H12D|340152|zinc finger CCCH-type containing 12D##BC157832|ZC3H12D|340152|zinc finger CCCH-type containing 12D##NM_207360|ZC3H12D|340152|zinc finger CCCH-type containing 12D##GQ129364|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129365|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC064134|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4	1.135894	0.0	denovo_WM_7:30:0.842
chr20	52207526	52207700	reg1006895.p1	6.511	+	AF041259 NM_006526	-7978	-	AK302570 NM_001193421	-405792	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-617835	+	TSC_hg19_v1_chr20_-_52210810 AK290350	3186	-	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	479449	-	AK315220 NM_003657	479690	-	AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##AK290350|ZNF217|7764|zinc finger protein 217##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1	0.0	0.0	
chr6	157253213	157253372	reg1005482.p1	6.511	+	TSC_hg19_v1_chr6_+_157099876 AF253515	-153417	+	TSC_hg19_v1_chr6_+_157099283 AF521671	-154008	+	TSC_hg19_v1_chr6_+_157099206 AB587572	-154067	+	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	491292	-	TSC_hg19_v1_chr6_-_157745183 NM_018452	491925	-	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	549247	+	AF253515|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_018452|TMEM242|729515|transmembrane protein 242##AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14	0.998957	0.0	denovo_WM_7:-18:0.518	denovo_WM_7:-19:0.462
chr17	73860983	73861163	reg1005619.p1	6.510	+	AB464357 CU679759 DQ891052 DQ894231 TSC_hg19_v1_chr17_-_73851417 AK293214 AF087866 BC007452 AK057881 BC010616 AK294082 AK294155 AK300875 NM_012478	-9635	-	TSC_hg19_v1_chr17_-_73840622 BC067084 NM_199242 AK300316	-20289	-	TSC_hg19_v1_chr17_-_73840495 AK024474	-20562	-	TSC_hg19_v1_chr17_-_73874063 BC017299	12990	-	TSC_hg19_v1_chr17_-_73874663 AY026763 NM_033452	13578	-	TSC_hg19_v1_chr17_-_73893051 BC021259 NM_173547	31990	-	DQ891052|WBP2|23558|WW domain binding protein 2##DQ894231|WBP2|23558|WW domain binding protein 2##AK293214|WBP2|23558|WW domain binding protein 2##AF087866|WBP2|23558|WW domain binding protein 2##BC007452|WBP2|23558|WW domain binding protein 2##AK057881|WBP2|23558|WW domain binding protein 2##BC010616|WBP2|23558|WW domain binding protein 2##AK294082|WBP2|23558|WW domain binding protein 2##AK294155|WBP2|23558|WW domain binding protein 2##AK300875|WBP2|23558|WW domain binding protein 2##NM_012478|WBP2|23558|WW domain binding protein 2##BC067084|UNC13D|201294|unc-13 homolog D (C. elegans)##NM_199242|UNC13D|201294|unc-13 homolog D (C. elegans)##AK300316|UNC13D|201294|unc-13 homolog D (C. elegans)##AK024474|UNC13D|201294|unc-13 homolog D (C. elegans)##BC017299|TRIM47|91107|tripartite motif containing 47##AY026763|TRIM47|91107|tripartite motif containing 47##NM_033452|TRIM47|91107|tripartite motif containing 47##BC021259|TRIM65|201292|tripartite motif containing 65##NM_173547|TRIM65|201292|tripartite motif containing 65	0.996073	0.0	denovo_WM_7:30:0.889
chr8	61825317	61825430	reg1005708.p1	6.510	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-233971	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-234085	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-395623	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	375177	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	776973	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	801645	-	BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase	1.921033	0.0	denovo_WM_7:-5:0.294	denovo_WM_7:-7:0.492	denovo_WM_7:7:0.474	denovo_WM_7:9:0.301
chr20	31382065	31382245	reg1006909.p2	6.508	+	TSC_hg19_v1_chr20_+_31367638 AF176228 NM_175850	-14508	+	TSC_hg19_v1_chr20_+_31350397 AK300857 AK299915 AF156487 AF156488 AK295176 AK299821 AK299776	-31736	+	AF331857 DQ321787 NM_001207055 NM_001207056 NM_006892 NM_175848 NM_175849 TSC_hg19_v1_chr20_+_31350190	-31963	+	TSC_hg19_v1_chr20_+_31407759 NM_012325 AK297273 BC106068 U24166 BC109281 BC040410	25580	+	TSC_hg19_v1_chr20_+_31407780 AK312590 BC128442	25641	+	BC029528 AF401350 BC026118 NM_080675	210079	-	AF176228|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_175850|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AK300857|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AK299915|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AF156487|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AF156488|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AK295176|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AK299821|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AK299776|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##AF331857|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##DQ321787|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_001207055|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_001207056|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_006892|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_175848|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_175849|DNMT3B|1789|DNA (cytosine-5-)-methyltransferase 3 beta##NM_012325|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##AK297273|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##BC106068|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##U24166|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##BC109281|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##BC040410|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##AK312590|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##BC128442|MAPRE1|22919|microtubule-associated protein, RP/EB family, member 1##BC029528|SUN5|140732|Sad1 and UNC84 domain containing 5##AF401350|SUN5|140732|Sad1 and UNC84 domain containing 5##BC026118|SUN5|140732|Sad1 and UNC84 domain containing 5##NM_080675|SUN5|140732|Sad1 and UNC84 domain containing 5	1.923512	0.0	denovo_WM_7:33:0.242	denovo_WM_7:37:0.432
chr17	10679882	10680049	reg1006809.p2	6.507	+	AY550194 NM_001004313	-46320	-	NM_020233 BC070155 AB073393 AK292629 BC001294	-79017	+	TSC_hg19_v1_chr17_-_10600869 DQ891605 DQ894798 AF026852 AF183424 BC015504 AK098826 AK315595 AK074588 NM_004589	-79112	-	AK021549 TSC_hg19_v1_chr17_-_10741398 AK299808 NM_001101387	61442	-	NM_001173461 NM_001173462 NM_207386	464774	+	AK094349 TSC_hg19_v1_chr17_+_11465221 BC105704 BC105705 BC105707 BC105706	785231	+	AY550194|TMEM220|388335|transmembrane protein 220##NM_001004313|TMEM220|388335|transmembrane protein 220##NM_020233|C17orf48|56985|chromosome 17 open reading frame 48##BC070155|C17orf48|56985|chromosome 17 open reading frame 48##AB073393|C17orf48|56985|chromosome 17 open reading frame 48##AK292629|C17orf48|56985|chromosome 17 open reading frame 48##BC001294|C17orf48|56985|chromosome 17 open reading frame 48##DQ891605|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##DQ894798|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AF026852|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AF183424|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##BC015504|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK098826|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK315595|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK074588|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##NM_004589|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK021549|PIRT|644139|phosphoinositide-interacting regulator of transient receptor potential channels##AK299808|PIRT|644139|phosphoinositide-interacting regulator of transient receptor potential channels##NM_001101387|PIRT|644139|phosphoinositide-interacting regulator of transient receptor potential channels##NM_001173461|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##NM_001173462|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##NM_207386|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##AK094349|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105704|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105705|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105707|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105706|SHISA6|388336|shisa homolog 6 (Xenopus laevis)	1.276378	0.0	
chr15	94796981	94797143	reg1006101.p1	6.506	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-22204	+	AB463222 AM392685 BC146682 AK074980 BC140838 BC151132 AL136826 TSC_hg19_v1_chr15_-_93632430 AK074910 AK291365 NM_020211	-1164709	-	NM_001166287	-1165311	-	NM_001159643 NM_018349 AY656717 BC131527	44399	+	NM_001159644 BC025708 BC111024 AK002037	102247	+	TSC_hg19_v1_chr15_-_95870310 BC040875	1073257	-	AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##AM392685|RGMA|56963|RGM domain family, member A##BC146682|RGMA|56963|RGM domain family, member A##AK074980|RGMA|56963|RGM domain family, member A##BC140838|RGMA|56963|RGM domain family, member A##BC151132|RGMA|56963|RGM domain family, member A##AL136826|RGMA|56963|RGM domain family, member A##AK074910|RGMA|56963|RGM domain family, member A##NM_020211|RGMA|56963|RGM domain family, member A##NM_001166287|RGMA|56963|RGM domain family, member A##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456	0.915767	0.0	denovo_WM_7:-94:0.342	denovo_WM_7:-95:0.396
chr3	122747516	122747638	reg1006661.p1	6.506	+	TSC_hg19_v1_chr3_-_122746605 AK309848	-969	-	TSC_hg19_v1_chr3_-_122746576 AK291407 NM_001031702	-1003	-	AK309834 TSC_hg19_v1_chr3_-_122746553 AK294528	-1026	-	NM_006810 TSC_hg19_v1_chr3_+_122785922 BC001625 D49490	38341	+	NM_012430 TSC_hg19_v1_chr3_+_122920787 AK315771 AF100749	173213	+	AK303070 NM_001199642	387611	-	AK309848|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##AK291407|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##NM_001031702|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##AK309834|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##AK294528|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##NM_006810|PDIA5|10954|protein disulfide isomerase family A, member 5##BC001625|PDIA5|10954|protein disulfide isomerase family A, member 5##D49490|PDIA5|10954|protein disulfide isomerase family A, member 5##NM_012430|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK315771|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AF100749|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK303070|ADCY5|111|adenylate cyclase 5##NM_001199642|ADCY5|111|adenylate cyclase 5	0.0	0.258576	CTCF.p2:-5:0.259
chr8	11151916	11152096	reg1005963.p3	6.506	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	-9651	+	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	-9994	+	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	-93141	-	AJ291677 NM_054028 BC131696	36504	+	BC038546 TSC_hg19_v1_chr8_-_11205010	52998	-	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	172223	-	AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A	0.999132	0.0	denovo_WM_7:11:0.239	denovo_WM_7:12:0.239	denovo_WM_7:13:0.239	denovo_WM_7:14:0.239
chr17	63225136	63225283	reg1006493.p2	6.505	+	TSC_hg19_v1_chr17_+_63133501 AK309061 AK290535 BC022504 AK301719 AF071476 AK289876 AF493933 AY585191	-91630	+	NM_001081955 NM_001165933 NM_003835 TSC_hg19_v1_chr17_+_63133479	-91739	+	TSC_hg19_v1_chr17_-_63052903 AK301699 NM_006572	-172308	-	BC006295 TSC_hg19_v1_chr17_-_63556453	331266	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	332470	-	CR933657 TSC_hg19_v1_chr17_-_63557767	332559	-	AK309061|RGS9|8787|regulator of G-protein signaling 9##AK290535|RGS9|8787|regulator of G-protein signaling 9##BC022504|RGS9|8787|regulator of G-protein signaling 9##AK301719|RGS9|8787|regulator of G-protein signaling 9##AF071476|RGS9|8787|regulator of G-protein signaling 9##AK289876|RGS9|8787|regulator of G-protein signaling 9##AF493933|RGS9|8787|regulator of G-protein signaling 9##AY585191|RGS9|8787|regulator of G-protein signaling 9##NM_001081955|RGS9|8787|regulator of G-protein signaling 9##NM_001165933|RGS9|8787|regulator of G-protein signaling 9##NM_003835|RGS9|8787|regulator of G-protein signaling 9##AK301699|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##NM_006572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC006295|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##CR933657|AXIN2|8313|axin 2	0.0	0.0	
chr20	45861565	45861668	reg1004689.p1	6.505	+	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-338064	+	TSC_hg19_v1_chr20_+_45523505 BC008803	-338108	+	TSC_hg19_v1_chr20_+_45523254 BC013882 NM_005244 NM_172110	-338334	+	TSC_hg19_v1_chr20_-_45927496 BC030721	65953	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	115031	-	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	123872	-	AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC008803|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC013882|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_005244|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_172110|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8	1.975978	0.0	denovo_WM_7:24:0.348	denovo_WM_7:25:0.335	denovo_WM_7:40:0.301	denovo_WM_7:41:0.288	denovo_WM_7:42:0.317
chr13	43562805	43562920	reg1003963.p1	6.504	+	NM_182508 AK310859 AK098238 BC093659 BC112237	-207138	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	-414528	+	BC040889 NM_033012	-425991	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	3508	-	AF126743 AY248898 NM_013238	34487	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	34840	+	NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15	0.995946	0.0	denovo_WM_7:12:0.815
chr7	8016488	8016633	reg1006638.p2	6.502	+	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	-8127	+	BC009868 NM_002947	-258323	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-336187	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	285156	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	285231	-	TSC_hg19_v1_chr7_-_8302174 U38260 L01100 BC008640 BC005922 NM_004968	285613	-	NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa##U38260|ICA1|3382|islet cell autoantigen 1, 69kDa##L01100|ICA1|3382|islet cell autoantigen 1, 69kDa##BC008640|ICA1|3382|islet cell autoantigen 1, 69kDa##BC005922|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_004968|ICA1|3382|islet cell autoantigen 1, 69kDa	0.996941	0.0	denovo_WM_7:0:0.841
chr17	42298978	42299134	reg1006617.p1	6.500	+	AK292577 TSC_hg19_v1_chr17_-_42298971 AK292518	-119	-	TSC_hg19_v1_chr17_-_42298282 BC042297 NM_001076683	-777	-	TSC_hg19_v1_chr17_-_42297051 NM_001076684 NM_014233	-2012	-	BC050302 TSC_hg19_v1_chr17_+_42299409	289	+	BC101574 BC101570 M27819 NM_000342 X12609 TSC_hg19_v1_chr17_-_42345504	46413	-	AL133657 NM_001144825 NM_001144826 NM_006695 TSC_hg19_v1_chr17_+_42385950 AB209802 AK226045 BC006194 AK313669 BX537443 AF055026 CR456748 CU675291 U93871	86934	+	AK292577|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292518|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC042297|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076683|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076684|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_014233|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC101574|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##BC101570|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##M27819|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##NM_000342|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##X12609|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##AL133657|RUNDC3A|10900|RUN domain containing 3A##NM_001144825|RUNDC3A|10900|RUN domain containing 3A##NM_001144826|RUNDC3A|10900|RUN domain containing 3A##NM_006695|RUNDC3A|10900|RUN domain containing 3A##AB209802|RUNDC3A|10900|RUN domain containing 3A##AK226045|RUNDC3A|10900|RUN domain containing 3A##BC006194|RUNDC3A|10900|RUN domain containing 3A##AK313669|RUNDC3A|10900|RUN domain containing 3A##BX537443|RUNDC3A|10900|RUN domain containing 3A##AF055026|RUNDC3A|10900|RUN domain containing 3A##CR456748|RUNDC3A|10900|RUN domain containing 3A##U93871|RUNDC3A|10900|RUN domain containing 3A	0.877387	0.0	denovo_WM_7:-41:0.248	denovo_WM_7:-42:0.520
chr2	44855626	44855781	reg1003615.p1	6.500	+	NM_024766 TSC_hg19_v1_chr2_+_44589085 BC029359 AK027104 BC053733	-266611	+	AK131463 NM_001171603 NM_001171617	-266732	-	AB007896 TSC_hg19_v1_chr2_-_44588634 BC151236 AK025649 NM_001171606 NM_001171613	-267023	-	AJ012611 NM_005413 AL162671	313343	+	BC024033 TSC_hg19_v1_chr2_-_45236562 AF332197 NM_016932	380847	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	939425	-	NM_024766|CAMKMT|79823|calmodulin-lysine N-methyltransferase##BC029359|CAMKMT|79823|calmodulin-lysine N-methyltransferase##AK027104|CAMKMT|79823|calmodulin-lysine N-methyltransferase##BC053733|CAMKMT|79823|calmodulin-lysine N-methyltransferase##AK131463|PREPL|9581|prolyl endopeptidase-like##NM_001171603|PREPL|9581|prolyl endopeptidase-like##NM_001171617|PREPL|9581|prolyl endopeptidase-like##AB007896|PREPL|9581|prolyl endopeptidase-like##BC151236|PREPL|9581|prolyl endopeptidase-like##AK025649|PREPL|9581|prolyl endopeptidase-like##NM_001171606|PREPL|9581|prolyl endopeptidase-like##NM_001171613|PREPL|9581|prolyl endopeptidase-like##AJ012611|SIX3|6496|SIX homeobox 3##NM_005413|SIX3|6496|SIX homeobox 3##AL162671|SIX3|6496|SIX homeobox 3##BC024033|SIX2|10736|SIX homeobox 2##AF332197|SIX2|10736|SIX homeobox 2##NM_016932|SIX2|10736|SIX homeobox 2##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1	0.998045	0.0	denovo_WM_7:-6:0.930
chr12	123209202	123209382	reg1006212.p2	6.499	+	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-7914	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-21420	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-197488	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	5713	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	28099	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	49809	+	AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62	0.0	0.0	
chrX	62418640	62418788	reg1005310.p2	6.499	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-4481755	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-4800254	+	NM_007157	-4800446	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	152485	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	229553	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	362153	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	0.0	
chr15	66446387	66446521	reg1007030.p1	6.498	+	TSC_hg19_v1_chr15_-_66321664 AK054827	-124761	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-284607	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-361861	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	99623	-	NM_133375 AK295392 BC022089	139191	+	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	139445	+	AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like	0.775297	0.022162	denovo_WM_7:-24:0.450
chr5	78123665	78123802	reg1004735.p2	6.498	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-179167	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-278710	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-317537	-	J05225 TSC_hg19_v1_chr5_-_78281101	157355	-	AK290865 TSC_hg19_v1_chr5_-_78281134	157400	-	TSC_hg19_v1_chr5_-_78281142 AK314903	157413	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	0.999617	0.0	denovo_WM_7:-40:0.842
chr6	131520998	131521150	reg1006593.p1	6.498	+	NM_016377 TSC_hg19_v1_chr6_+_131456855 AK300587	-64227	+	TSC_hg19_v1_chr6_-_131384387 AK295124 NM_001135554 NM_001135555 NM_001199388 NM_001431	-136650	-	AF027299 TSC_hg19_v1_chr6_-_131384381 BC034718 AB209522	-136723	-	NM_004842 NM_138633	50224	+	NM_000045 NM_001244438 AY074488 BC005321 TSC_hg19_v1_chr6_+_131894365 M14502 BC020653 CU676606 AB590280 DQ892039 DQ895230 BT006741	373308	+	AB385438 AF135022 AM393572 EU832308 EU832392 EU392526 EU392528 EU392529 EU392530 EU392531 AK315030 AF105332 EU392520 EU392522 EU392527 EU392532 BC060759 TSC_hg19_v1_chr6_-_131949372 AF104255 AL136776 AB033042 BC007088 NM_004830 NM_015979	428213	-	NM_016377|AKAP7|9465|A kinase (PRKA) anchor protein 7##AK300587|AKAP7|9465|A kinase (PRKA) anchor protein 7##AK295124|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001135554|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001135555|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199388|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001431|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AF027299|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##BC034718|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AB209522|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_004842|AKAP7|9465|A kinase (PRKA) anchor protein 7##NM_138633|AKAP7|9465|A kinase (PRKA) anchor protein 7##NM_000045|ARG1|383|arginase, liver##NM_001244438|ARG1|383|arginase, liver##AY074488|ARG1|383|arginase, liver##BC005321|ARG1|383|arginase, liver##M14502|ARG1|383|arginase, liver##BC020653|ARG1|383|arginase, liver##DQ892039|ARG1|383|arginase, liver##DQ895230|ARG1|383|arginase, liver##BT006741|ARG1|383|arginase, liver##AF135022|MED23|9439|mediator complex subunit 23##AM393572|MED23|9439|mediator complex subunit 23##EU832308|MED23|9439|mediator complex subunit 23##EU832392|MED23|9439|mediator complex subunit 23##EU392526|MED23|9439|mediator complex subunit 23##EU392528|MED23|9439|mediator complex subunit 23##EU392529|MED23|9439|mediator complex subunit 23##EU392530|MED23|9439|mediator complex subunit 23##EU392531|MED23|9439|mediator complex subunit 23##AK315030|MED23|9439|mediator complex subunit 23##AF105332|MED23|9439|mediator complex subunit 23##EU392520|MED23|9439|mediator complex subunit 23##EU392522|MED23|9439|mediator complex subunit 23##EU392527|MED23|9439|mediator complex subunit 23##EU392532|MED23|9439|mediator complex subunit 23##BC060759|MED23|9439|mediator complex subunit 23##AF104255|MED23|9439|mediator complex subunit 23##AL136776|MED23|9439|mediator complex subunit 23##AB033042|MED23|9439|mediator complex subunit 23##BC007088|MED23|9439|mediator complex subunit 23##NM_004830|MED23|9439|mediator complex subunit 23##NM_015979|MED23|9439|mediator complex subunit 23	0.0	0.083635	
chr8	29274871	29275033	reg1006299.p2	6.498	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-66882	-	AL137704 NM_057158	-68631	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-154338	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	665522	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	665620	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	677991	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.993008	0.0	denovo_WM_7:0:0.314	denovo_WM_7:0:0.314	denovo_WM_7:1:0.314
chr1	247095382	247095562	reg1005455.p1	6.496	+	AK057394 AY157619 AB059277 NM_015446	-780	-	TSC_hg19_v1_chr1_-_247054277 AL833491	-41177	-	TSC_hg19_v1_chr1_+_246887713 AK075178 BC026185 CU693152 AF151807	-207815	+	BC023527 AF242519 TSC_hg19_v1_chr1_-_247171319	75840	-	TSC_hg19_v1_chr1_-_247171329 BC041082 AX721130	75859	-	BC055096 TSC_hg19_v1_chr1_-_247171375 NM_001204221 NM_020394	75902	-	AK057394|AHCTF1P1|285116|AT hook containing transcription factor 1 pseudogene 1##AY157619|AHCTF1|25909|AT hook containing transcription factor 1##AB059277|AHCTF1|25909|AT hook containing transcription factor 1##NM_015446|AHCTF1|25909|AT hook containing transcription factor 1##AL833491|AHCTF1|25909|AT hook containing transcription factor 1##AK075178|SCCPDH|51097|saccharopine dehydrogenase (putative)##BC026185|SCCPDH|51097|saccharopine dehydrogenase (putative)##AF151807|SCCPDH|51097|saccharopine dehydrogenase (putative)##BC023527|ZNF695|57116|zinc finger protein 695##BC041082|ZNF695|57116|zinc finger protein 695##BC055096|ZNF695|57116|zinc finger protein 695##NM_001204221|ZNF695|57116|zinc finger protein 695##NM_020394|ZNF695|57116|zinc finger protein 695	0.0	0.0	
chr2	102372459	102372578	reg1000771.p3	6.496	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-58166	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-281325	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-368529	-	TSC_hg19_v1_chr2_+_102508334 BC045694	135824	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	136014	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	235845	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.781604	0.0	
chr1	205280648	205280809	reg1004960.p2	6.495	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-44094	+	AK293734 NM_001242925	-82670	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-83645	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	10115	-	BC036076 TSC_hg19_v1_chr1_-_205313311	32582	-	AK299227 AK001610 NM_018203 AK096590	45312	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.052568	0.0	
chr3	73022251	73022368	reg1005279.p2	6.495	+	TSC_hg19_v1_chr3_+_72937356 NM_001080393	-85033	+	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	-124717	-	BC017274 TSC_hg19_v1_chr3_-_72897575	-124734	-	TSC_hg19_v1_chr3_+_73045961 AK289901 BC100281	23648	+	TSC_hg19_v1_chr3_+_73045984 BC110889	23682	+	TSC_hg19_v1_chr3_+_73046081 AF327345 NM_174907 BC128136 BC128137	23811	+	NM_001080393|GXYLT2|727936|glucoside xylosyltransferase 2##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK289901|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC100281|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##AF327345|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##NM_174907|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128136|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128137|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2	0.960708	0.056452	denovo_WM_7:-55:0.961
chr9	74331241	74331349	reg1004586.p1	6.495	+	AL136545 TSC_hg19_v1_chr9_-_74061901	-269412	-	AJ505025 AJ505026 NM_001007471 TSC_hg19_v1_chr9_-_73736559	-594759	-	BC067733 AF325212 AK021788 AK225732 BC094699 NM_001007470 NM_020952 NM_024971 NM_206944 NM_206945 NM_206946 NM_206947 NM_206948 BC142972	-847335	-	BC140773 BC144510 BC171782 AB037833 BC146780 TSC_hg19_v1_chr9_-_74383430 AF137030 AK300405 AK056807 NM_001135820 NM_013390	52283	-	AF151825 TSC_hg19_v1_chr9_-_74525994	194630	-	TSC_hg19_v1_chr9_-_74526110 BC044576 NM_001025780 NM_016014 AK293060	194861	-	AL136545|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505025|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505026|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007471|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC067733|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AF325212|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK021788|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK225732|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC094699|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007470|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_020952|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_024971|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206944|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206945|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206946|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206947|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206948|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC142972|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC140773|TMEM2|23670|transmembrane protein 2##BC144510|TMEM2|23670|transmembrane protein 2##BC171782|TMEM2|23670|transmembrane protein 2##AB037833|TMEM2|23670|transmembrane protein 2##BC146780|TMEM2|23670|transmembrane protein 2##AF137030|TMEM2|23670|transmembrane protein 2##AK300405|TMEM2|23670|transmembrane protein 2##NM_001135820|TMEM2|23670|transmembrane protein 2##NM_013390|TMEM2|23670|transmembrane protein 2##AF151825|FAM108B1|51104|family with sequence similarity 108, member B1##BC044576|FAM108B1|51104|family with sequence similarity 108, member B1##NM_001025780|FAM108B1|51104|family with sequence similarity 108, member B1##NM_016014|FAM108B1|51104|family with sequence similarity 108, member B1##AK293060|FAM108B1|51104|family with sequence similarity 108, member B1	1.595964	0.054579	denovo_WM_7:-21:0.280	denovo_WM_7:46:0.919	denovo_WM_7:79:0.230
chr2	76642891	76643071	reg1006498.p1	6.493	+	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-704930	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-705262	-	TSC_hg19_v1_chr2_+_75873908 NM_014763 AK295578 AK291250 BC030144 CU688824 AB463123 BC021051 D14660 DQ892303 DQ895502	-769043	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	1106437	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	2609857	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	2672152	-	BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_014763|MRPL19|9801|mitochondrial ribosomal protein L19##AK295578|MRPL19|9801|mitochondrial ribosomal protein L19##AK291250|MRPL19|9801|mitochondrial ribosomal protein L19##BC030144|MRPL19|9801|mitochondrial ribosomal protein L19##BC021051|MRPL19|9801|mitochondrial ribosomal protein L19##D14660|MRPL19|9801|mitochondrial ribosomal protein L19##DQ892303|MRPL19|9801|mitochondrial ribosomal protein L19##DQ895502|MRPL19|9801|mitochondrial ribosomal protein L19##BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta	0.997209	0.0	denovo_WM_7:-49:0.841
chr19	11617223	11617398	reg1006319.p2	6.492	+	TSC_hg19_v1_chr19_-_11616689 AK131037 NM_138783	-589	-	TSC_hg19_v1_chr19_-_11616637 HQ258023 AY072704 BC014187 AK314986 BC016816	-783	-	AY036909 L26405 D26158 BC014144 NM_001420 NM_032281 TSC_hg19_v1_chr19_-_11591862	-25657	-	AK314905 NM_001243204	22369	-	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	22647	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	32349	+	AK131037|ZNF653|115950|zinc finger protein 653##NM_138783|ZNF653|115950|zinc finger protein 653##HQ258023|ZNF653|115950|zinc finger protein 653##AY072704|ZNF653|115950|zinc finger protein 653##BC014187|ZNF653|115950|zinc finger protein 653##AK314986|ZNF653|115950|zinc finger protein 653##BC016816|ZNF653|115950|zinc finger protein 653##AY036909|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##L26405|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##D26158|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC014144|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_001420|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_032281|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##AK314905|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001243204|ECSIT|51295|ECSIT homolog (Drosophila)##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle	0.9989	0.0	
chr7	116598169	116598281	reg1004942.p1	6.492	+	AK292372 BC030954 TSC_hg19_v1_chr7_+_116593554 AK298540 CU687306 CU689046 DQ892647 DQ895886	-4652	+	TSC_hg19_v1_chr7_+_116593397 BC075855 NM_018412 NM_021908 AF234882 AF234883	-4840	+	TSC_hg19_v1_chr7_+_116502640 BC005338 AK293405 AK294409 AK315915 AK222989 AK223004 U03269 BC015963 BT006735 CU675123 U03851	-95593	+	TSC_hg19_v1_chr7_+_116660271 AK093212	62042	+	TSC_hg19_v1_chr7_+_116660294 AY009152 AY009153 AK297510	62140	+	BC078170 AK056742 NM_003391 X07876	365110	-	AK292372|ST7|7982|suppression of tumorigenicity 7##BC030954|ST7|7982|suppression of tumorigenicity 7##AK298540|ST7|7982|suppression of tumorigenicity 7##DQ892647|ST7|7982|suppression of tumorigenicity 7##DQ895886|ST7|7982|suppression of tumorigenicity 7##BC075855|ST7|7982|suppression of tumorigenicity 7##NM_018412|ST7|7982|suppression of tumorigenicity 7##NM_021908|ST7|7982|suppression of tumorigenicity 7##AF234882|ST7|7982|suppression of tumorigenicity 7##AF234883|ST7|7982|suppression of tumorigenicity 7##BC005338|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##AK293405|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##AK294409|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##AK315915|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##AK222989|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##AK223004|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##U03269|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##BC015963|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##BT006735|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##U03851|CAPZA2|830|capping protein (actin filament) muscle Z-line, alpha 2##AK093212|ST7|7982|suppression of tumorigenicity 7##AY009152|ST7|7982|suppression of tumorigenicity 7##AY009153|ST7|7982|suppression of tumorigenicity 7##AK297510|ST7|7982|suppression of tumorigenicity 7##BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2	0.99722	0.0	
chr9	76256113	76256216	reg1004304.p2	6.492	+	TSC_hg19_v1_chr9_+_75766797 BC001275	-489361	+	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	-489386	+	NM_000689	-687932	-	NM_006914 BC051830 Y08639	856110	+	AY333284 NM_001177311	1246098	-	AY333283 NM_001177310 AF448232 AY333282 AY333285 AY333286 AY333287 AY333288	1246570	-	BC001275|ANXA1|301|annexin A1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1##NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##NM_006914|RORB|6096|RAR-related orphan receptor B##BC051830|RORB|6096|RAR-related orphan receptor B##Y08639|RORB|6096|RAR-related orphan receptor B##AY333284|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177311|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333283|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177310|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AF448232|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333282|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333285|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333286|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333287|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333288|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6	0.460503	0.0	denovo_WM_7:29:0.461
chr10	82260788	82260968	reg1006879.p4	6.491	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-46774	+	TSC_hg19_v1_chr10_+_82214071 AF311903	-46807	+	AK074558 AK295321 AL136638 TSC_hg19_v1_chr10_+_82214066	-46810	+	AK123885 NM_207372	36779	+	AK123978 NM_001145719	39696	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	1374204	+	BC002920|TSPAN14|81619|tetraspanin 14##AF311903|TSPAN14|81619|tetraspanin 14##AK074558|TSPAN14|81619|tetraspanin 14##AK295321|TSPAN14|81619|tetraspanin 14##AL136638|TSPAN14|81619|tetraspanin 14##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3	0.955026	0.0	denovo_WM_7:-6:0.308	denovo_WM_7:-8:0.309
chr20	31072787	31072967	reg1002369.p1	6.491	+	BC038088 TSC_hg19_v1_chr20_-_31071385	-1486	-	AK056286 TSC_hg19_v1_chr20_-_31071290 NM_080616	-1612	-	TSC_hg19_v1_chr20_+_31037448 AL080086	-35375	+	BC023657 BC065483 TSC_hg19_v1_chr20_-_31172902	100046	-	BC105014 BC105042 AK091025 AX746738 NM_182584	166793	-	AY542162 TSC_hg19_v1_chr20_-_31331262 BC000628 AK097059 AK027893	258376	-	BC038088|C20orf112|140688|chromosome 20 open reading frame 112##AK056286|C20orf112|140688|chromosome 20 open reading frame 112##NM_080616|C20orf112|140688|chromosome 20 open reading frame 112##BC023657|LOC284804|284804|uncharacterized LOC284804##BC065483|LOC284804|284804|uncharacterized LOC284804##BC105014|C20orf203|284805|chromosome 20 open reading frame 203##BC105042|C20orf203|284805|chromosome 20 open reading frame 203##AK091025|C20orf203|284805|chromosome 20 open reading frame 203##NM_182584|C20orf203|284805|chromosome 20 open reading frame 203##AY542162|COMMD7|149951|COMM domain containing 7##BC000628|COMMD7|149951|COMM domain containing 7##AK097059|COMMD7|149951|COMM domain containing 7##AK027893|COMMD7|149951|COMM domain containing 7	1.995189	0.0	denovo_WM_7:-5:0.202	denovo_WM_7:-6:0.333	denovo_WM_7:-7:0.440	denovo_WM_7:8:0.261	denovo_WM_7:9:0.606
chr5	116006857	116007030	reg1006543.p1	6.491	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-96429	-	TSC_hg19_v1_chr5_+_115898220 D28352	-108719	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-586222	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2317295	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2399868	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2400222	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.652254	0.0	denovo_WM_7:-53:0.433
chr17	65712622	65712748	reg1006496.p2	6.490	+	BC007905 NM_012417 NM_181671	-338762	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-339097	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-339276	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	1365	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	109017	+	AK293224 TSC_hg19_v1_chr17_+_65822221	109532	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.995722	0.0	
chr9	82790349	82790466	reg1007241.p1	6.490	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-602722	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-602883	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-603521	+	BC010100 NM_005077	1513188	-	TSC_hg19_v1_chr9_-_84304463 AB209854	1514020	-	NM_001145197 AK125847 AK308327	1752964	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	0.478787	0.764566	CTCF.p2:-10:0.285	CTCF.p2:-11:0.480	denovo_WM_7:-40:0.281
chr13	24554275	24554421	reg1006264.p2	6.489	+	TSC_hg19_v1_chr13_+_24553943 BX648244 BC043582	-415	+	BX648445 TSC_hg19_v1_chr13_+_24553892	-483	+	NM_001007537 CU691876 BC137004 BC137006 BC144450	-83190	-	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	180547	+	AK299981 AK301149 TSC_hg19_v1_chr13_+_24825840	271487	+	TSC_hg19_v1_chr13_+_24844889 AK297394 AK298717 AK123031	290550	+	BX648244|SPATA13|221178|spermatogenesis associated 13##NM_001007537|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137004|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137006|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC144450|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13##AK299981|SPATA13|221178|spermatogenesis associated 13##AK301149|SPATA13|221178|spermatogenesis associated 13##AK297394|SPATA13|221178|spermatogenesis associated 13##AK298717|SPATA13|221178|spermatogenesis associated 13##AK123031|SPATA13|221178|spermatogenesis associated 13	0.984969	0.0	denovo_WM_7:-16:0.842
chr5	177581047	177581190	reg1005375.p2	6.489	+	TSC_hg19_v1_chr5_-_177580916 NM_001034833 NM_017838	-182	-	CR457238 AF401219 TSC_hg19_v1_chr5_-_177580868 AK000486 BC000009 AF161404 AJ293309 BC006387	-261	-	TSC_hg19_v1_chr5_+_177558026 BC009911 DQ494789 NM_022762	-23086	+	TSC_hg19_v1_chr5_+_177631530 AK097657 NM_004499 NM_031266	50396	+	AK054600 TSC_hg19_v1_chr5_+_177631533	50415	+	AK223425 TSC_hg19_v1_chr5_+_177631534 BC004561 BC009359 BC001616 BC002625 BC015556 BC036708 M65028	50454	+	NM_001034833|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##NM_017838|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##CR457238|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF401219|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AK000486|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC000009|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF161404|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AJ293309|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC006387|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC009911|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##DQ494789|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##NM_022762|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK097657|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_004499|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_031266|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK054600|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##AK223425|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC004561|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC009359|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC001616|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC002625|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC015556|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##BC036708|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##M65028|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B	0.98511	0.0	denovo_WM_7:44:0.945
chr10	14701860	14701965	reg1004385.p1	6.488	+	TSC_hg19_v1_chr10_-_14646423 BC072452	-55483	-	TSC_hg19_v1_chr10_-_14646259 BC064407	-55595	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	-329062	-	AK127413 NM_031453	114983	-	TSC_hg19_v1_chr10_-_14880025 BC133042 BC133044 BC144619 NM_001029954 AK301259	178110	-	TSC_hg19_v1_chr10_+_14880314 BC108738 NM_016299 AK225265 AK225651 AK302452 AK000880 BC065281 BC038845	178323	+	BC072452|FAM107B|83641|family with sequence similarity 107, member B##BC064407|FAM107B|83641|family with sequence similarity 107, member B##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##AK127413|FAM107B|83641|family with sequence similarity 107, member B##NM_031453|FAM107B|83641|family with sequence similarity 107, member B##BC133042|CDNF|441549|cerebral dopamine neurotrophic factor##BC133044|CDNF|441549|cerebral dopamine neurotrophic factor##BC144619|CDNF|441549|cerebral dopamine neurotrophic factor##NM_001029954|CDNF|441549|cerebral dopamine neurotrophic factor##BC108738|HSPA14|51182|heat shock 70kDa protein 14##NM_016299|HSPA14|51182|heat shock 70kDa protein 14##AK225265|HSPA14|51182|heat shock 70kDa protein 14##AK225651|HSPA14|51182|heat shock 70kDa protein 14##AK302452|HSPA14|51182|heat shock 70kDa protein 14##AK000880|HSPA14|51182|heat shock 70kDa protein 14##BC065281|HSPA14|51182|heat shock 70kDa protein 14##BC038845|HSPA14|51182|heat shock 70kDa protein 14	0.755919	0.0	denovo_WM_7:-3:0.582
chr8	38221121	38221281	reg1006190.p3	6.488	+	TSC_hg19_v1_chr8_-_38205660 AB384816 CU680186 BC073858	-15509	-	BC033025 AK292118 TSC_hg19_v1_chr8_-_38126733 AF212238 BC106014 NM_001102559 NM_001102560 NM_032483	-94485	-	TSC_hg19_v1_chr8_+_38089233 AK125904 NM_001164232	-131884	+	TSC_hg19_v1_chr8_-_38239339 BC101717 BC113469 BC143510 BC115006 BC115007	18152	-	AK022560 TSC_hg19_v1_chr8_-_38239782 AJ295990 AJ295991 AJ295992 BC062631 BC012059 AF255649 BC007787	18425	-	TSC_hg19_v1_chr8_-_38239790 AF332468 AF332469 NM_017778 NM_023034 BC000030	18595	-	BC073858|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC033025|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AK292118|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AF212238|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##BC106014|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_001102559|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_001102560|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_032483|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AK125904|DDHD2|23259|DDHD domain containing 2##NM_001164232|DDHD2|23259|DDHD domain containing 2##BC101717|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC113469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC143510|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115006|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115007|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AK022560|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295990|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295991|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295992|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC062631|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC012059|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF255649|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC007787|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF332468|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF332469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_017778|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_023034|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC000030|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1	0.999063	0.0	
chr10	104661296	104661388	reg1005284.p1	6.487	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-32085	+	NM_001136200 NM_144591 AL832477 TSC_hg19_v1_chr10_+_104614015 AK098071 BC015994 BC040069 AK311742	-47341	+	AK308466 BT020000 CU687686 BC062997 BC063388 BC032843 M14564 TSC_hg19_v1_chr10_-_104597171 AK289898 AK094106 AK312235 NM_000102	-64158	-	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	16715	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	291705	-	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	344331	+	NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##NM_001136200|C10orf32|119032|chromosome 10 open reading frame 32##NM_144591|C10orf32|119032|chromosome 10 open reading frame 32##AL832477|C10orf32|119032|chromosome 10 open reading frame 32##AK098071|C10orf32|119032|chromosome 10 open reading frame 32##BC015994|C10orf32|119032|chromosome 10 open reading frame 32##BC040069|C10orf32-AS3MT|100528007|C10orf32-AS3MT readthrough##AK311742|C10orf32|119032|chromosome 10 open reading frame 32##AK308466|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BT020000|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC062997|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC063388|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC032843|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##M14564|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK289898|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK094106|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK312235|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##NM_000102|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE	0.020248	0.547537	CTCF.p2:9:0.548
chr12	31904842	31904996	reg1005598.p1	6.487	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-22863	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-22945	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-92305	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	40285	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	207412	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	207475	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	1.961492	0.0	denovo_WM_7:-19:0.768	denovo_WM_7:-34:0.586	denovo_WM_7:-35:0.390
chr6	144665117	144665204	reg1003685.p1	6.486	+	NM_007124 X69086	-52242	+	TSC_hg19_v1_chr6_+_144607461 AK292506	-57680	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-193439	+	AK124757 TSC_hg19_v1_chr6_+_146056061	1390874	+	TSC_hg19_v1_chr6_-_146056437 AJ130763 AJ130764	1391253	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	1391441	-	NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK292506|UTRN|7402|utrophin##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK124757|LOC100507557|100507557|uncharacterized LOC100507557##AJ130763|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AJ130764|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	1.958841	0.0	denovo_WM_7:-49:0.885
chr10	60808293	60808453	reg1005555.p2	6.484	+	TSC_hg19_v1_chr10_+_60272869 NM_001080512 AY726586	-535461	+	BC029815 TSC_hg19_v1_chr10_+_60145169 AK312558 M62810 NM_003201 BC018628 BC104482 BC126366 EU279428 HQ258758 AB451241 AB451366 AB464302 BT019658 BT019659 CR407653	-663168	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	-713537	+	TSC_hg19_v1_chr10_-_60936189 AK055418	127833	-	AL834339 NM_032439 TSC_hg19_v1_chr10_+_60936408 CR749429	128015	+	BC011268 AK054956 TSC_hg19_v1_chr10_+_60936573 AB384640 AM392743	128187	+	NM_001080512|BICC1|80114|bicaudal C homolog 1 (Drosophila)##AY726586|BICC1|80114|bicaudal C homolog 1 (Drosophila)##BC029815|TFAM|7019|transcription factor A, mitochondrial##AK312558|TFAM|7019|transcription factor A, mitochondrial##M62810|TFAM|7019|transcription factor A, mitochondrial##NM_003201|TFAM|7019|transcription factor A, mitochondrial##BC018628|TFAM|7019|transcription factor A, mitochondrial##BC104482|TFAM|7019|transcription factor A, mitochondrial##BC126366|TFAM|7019|transcription factor A, mitochondrial##EU279428|TFAM|7019|transcription factor A, mitochondrial##HQ258758|TFAM|7019|transcription factor A, mitochondrial##AB451241|TFAM|7019|transcription factor A, mitochondrial##AB451366|TFAM|7019|transcription factor A, mitochondrial##BT019658|TFAM|7019|transcription factor A, mitochondrial##BT019659|TFAM|7019|transcription factor A, mitochondrial##CR407653|TFAM|7019|transcription factor A, mitochondrial##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AL834339|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##NM_032439|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##CR749429|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##BC011268|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AK054956|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AM392743|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like	0.990855	0.0	denovo_WM_7:33:0.473	denovo_WM_7:34:0.473
chr13	111367828	111367944	reg1001169.p2	6.484	+	AB024402 AF181849 NM_005537	-543	+	AB024401 AF149721 TSC_hg19_v1_chr13_+_111366061	-1831	+	NM_198218 AF181850 NM_198219	-2270	+	CU674848 CU691752 TSC_hg19_v1_chr13_-_111567293	199401	-	TSC_hg19_v1_chr13_-_111567375 BC001727 AK096083 BC039715	199479	-	AK000100 NM_017664 TSC_hg19_v1_chr13_-_111567417	199530	-	AB024402|ING1|3621|inhibitor of growth family, member 1##AF181849|ING1|3621|inhibitor of growth family, member 1##NM_005537|ING1|3621|inhibitor of growth family, member 1##AB024401|ING1|3621|inhibitor of growth family, member 1##AF149721|ING1|3621|inhibitor of growth family, member 1##NM_198218|ING1|3621|inhibitor of growth family, member 1##AF181850|ING1|3621|inhibitor of growth family, member 1##NM_198219|ING1|3621|inhibitor of growth family, member 1##BC001727|ANKRD10|55608|ankyrin repeat domain 10##AK096083|ANKRD10|55608|ankyrin repeat domain 10##BC039715|ANKRD10|55608|ankyrin repeat domain 10##AK000100|ANKRD10|55608|ankyrin repeat domain 10##NM_017664|ANKRD10|55608|ankyrin repeat domain 10	0.599709	0.0	denovo_WM_7:20:0.236
chr19	6538319	6538414	reg1003555.p2	6.484	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-7340	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-36049	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-56583	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	52666	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	52740	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	52792	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.99689	0.0	
chr2	13635254	13635410	reg1005791.p2	6.484	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-776935	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-777416	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-778079	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1137489	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1137519	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2066097	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	0.99655	0.0	
chr18	43773513	43773639	reg1006565.p1	6.483	+	TSC_hg19_v1_chr18_+_43754065 AK289738	-19494	+	TSC_hg19_v1_chr18_+_43754007 BC084579	-19561	+	TSC_hg19_v1_chr18_+_43754002 NM_001008239 NM_145055 AK292981	-19582	+	TSC_hg19_v1_chr18_+_43913942 AK055997	140356	+	AK091537 AK122819 AK127467 AX747044 NM_152470	140610	+	AK057232 BC047720 NM_001145473 NM_001173129	325464	-	AK289738|C18orf25|147339|chromosome 18 open reading frame 25##BC084579|C18orf25|147339|chromosome 18 open reading frame 25##NM_001008239|C18orf25|147339|chromosome 18 open reading frame 25##NM_145055|C18orf25|147339|chromosome 18 open reading frame 25##AK292981|C18orf25|147339|chromosome 18 open reading frame 25##AK055997|RNF165|494470|ring finger protein 165##AK091537|RNF165-IT1|147341|RNF165 intronic transcript 1 (non-protein coding)##AK122819|RNF165|494470|ring finger protein 165##AK127467|RNF165|494470|ring finger protein 165##NM_152470|RNF165|494470|ring finger protein 165##AK057232|LOXHD1|125336|lipoxygenase homology domains 1##BC047720|LOXHD1|125336|lipoxygenase homology domains 1##NM_001145473|LOXHD1|125336|lipoxygenase homology domains 1##NM_001173129|LOXHD1|125336|lipoxygenase homology domains 1	0.998747	0.0	
chr6	71125064	71125179	reg1005071.p1	6.483	+	TSC_hg19_v1_chr6_+_71123224 CR749254 BC131782	-1907	+	TSC_hg19_v1_chr6_+_71123122 NM_001105531 NM_020819	-2008	+	X54412 BC015409 TSC_hg19_v1_chr6_-_71012827 NM_001851	-112321	-	NM_001162529 AB037832	11036	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	151504	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	252402	+	CR749254|FAM135A|57579|family with sequence similarity 135, member A##BC131782|FAM135A|57579|family with sequence similarity 135, member A##NM_001105531|FAM135A|57579|family with sequence similarity 135, member A##NM_020819|FAM135A|57579|family with sequence similarity 135, member A##X54412|COL9A1|1297|collagen, type IX, alpha 1##BC015409|COL9A1|1297|collagen, type IX, alpha 1##NM_001851|COL9A1|1297|collagen, type IX, alpha 1##NM_001162529|FAM135A|57579|family with sequence similarity 135, member A##AB037832|FAM135A|57579|family with sequence similarity 135, member A##BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1	0.111426	0.0	
chr14	50862922	50863102	reg1006547.p1	6.482	+	BC104977 NM_004196	-396	-	TSC_hg19_v1_chr14_+_50779043 BC011549 NM_001003803 NM_001003805 NM_015684 AF052186 U79253	-83971	+	TSC_hg19_v1_chr14_-_50778948 CU675259 AY757363 BC006117 AK309294 AK022680 AK292627 NM_024884	-84132	-	TSC_hg19_v1_chr14_-_50999306 BC036013 NM_006575 NM_198794 U77129	136298	-	NM_001127713	136787	+	NM_015915 NM_181598 AY032844 TSC_hg19_v1_chr14_+_51026833 AK223436 AK290185 BC010708	163778	+	BC104977|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##NM_004196|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##BC011549|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003803|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003805|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_015684|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AF052186|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##U79253|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AY757363|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC006117|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK309294|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK022680|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK292627|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##NM_024884|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC036013|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_006575|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_198794|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##U77129|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_001127713|ATL1|51062|atlastin GTPase 1##NM_015915|ATL1|51062|atlastin GTPase 1##NM_181598|ATL1|51062|atlastin GTPase 1##AY032844|ATL1|51062|atlastin GTPase 1##AK223436|ATL1|51062|atlastin GTPase 1##AK290185|ATL1|51062|atlastin GTPase 1##BC010708|ATL1|51062|atlastin GTPase 1	2.171815	0.0	denovo_WM_7:-82:0.420	denovo_WM_7:-85:0.441	denovo_WM_7:-100:0.594
chr1	205255107	205255192	reg1000936.p3	6.481	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-18515	+	AK293734 NM_001242925	-57091	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-58066	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	35694	-	BC036076 TSC_hg19_v1_chr1_-_205313311	58161	-	AK299227 AK001610 NM_018203 AK096590	70891	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.997003	0.0	
chr13	59069974	59070061	reg1004699.p1	6.479	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-862121	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-864070	+	NM_001040429	-864229	+	BC041395 TSC_hg19_v1_chr13_-_60325215	1255127	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	1517303	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	1667964	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	1.362196	0.0	denovo_WM_7:-11:0.819	denovo_WM_7:96:0.345
chr3	133968702	133968845	reg1004904.p1	6.477	+	BC051347 TSC_hg19_v1_chr3_-_133748836 NM_005630	-219900	-	U70867 BC041140 AK303550 AK309561 TSC_hg19_v1_chr3_-_133748770	-220023	-	AK025826 AK225383 BC051274 BC064502 BC082257 NM_025041	-320187	-	TSC_hg19_v1_chr3_-_133969397 AB527382	691	-	TSC_hg19_v1_chr3_-_133969650 NM_001005861 NM_002958 X69970 X96588	853	-	TSC_hg19_v1_chr3_-_134093290 AK223598 AK001343 AB023206 AK291616 NM_016201	124592	-	BC051347|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##NM_005630|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##U70867|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##BC041140|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##AK303550|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##AK309561|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##AK025826|C3orf36|80111|chromosome 3 open reading frame 36##AK225383|C3orf36|80111|chromosome 3 open reading frame 36##BC051274|C3orf36|80111|chromosome 3 open reading frame 36##BC064502|C3orf36|80111|chromosome 3 open reading frame 36##BC082257|C3orf36|80111|chromosome 3 open reading frame 36##NM_025041|C3orf36|80111|chromosome 3 open reading frame 36##NM_001005861|RYK|6259|RYK receptor-like tyrosine kinase##NM_002958|RYK|6259|RYK receptor-like tyrosine kinase##X69970|RYK|6259|RYK receptor-like tyrosine kinase##X96588|RYK|6259|RYK receptor-like tyrosine kinase##AK223598|AMOTL2|51421|angiomotin like 2##AK001343|AMOTL2|51421|angiomotin like 2##AB023206|AMOTL2|51421|angiomotin like 2##AK291616|AMOTL2|51421|angiomotin like 2##NM_016201|AMOTL2|51421|angiomotin like 2	1.087898	0.022822	
chr7	46192342	46192515	reg1005508.p1	6.477	+	DQ884396 DQ884397 DQ884398 AB590345 DQ895344 BC018962 BC000013 M31159 BC064987 TSC_hg19_v1_chr7_-_45960872 AK075483 AK095991 AK123735 AK055632 AK056274 AK091706 AK091745 AK092447 AK095408 AK095864 AK095869 AK095900 AK095907 AK095974 AK097201 AK122873 AK125224 AK127537 AK129951 AK130884 AK297767 AK298143 AK315668 AX747551 NM_000598 NM_001013398 X64875	-231622	-	AF042356 TSC_hg19_v1_chr7_+_45933167	-259294	+	NM_000596 TSC_hg19_v1_chr7_+_45928086 AK314925 BC057806 M31145 BC035263 X12385 M20841 X13405 Y00856 BT019685 FJ795026	-264323	+	TSC_hg19_v1_chr7_-_47579207 BC071791	1386781	-	TSC_hg19_v1_chr7_-_47621681 CR749644	1429235	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	1429355	-	DQ884396|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884397|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884398|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ895344|IGFBP3|3486|insulin-like growth factor binding protein 3##BC018962|IGFBP3|3486|insulin-like growth factor binding protein 3##BC000013|IGFBP3|3486|insulin-like growth factor binding protein 3##M31159|IGFBP3|3486|insulin-like growth factor binding protein 3##BC064987|IGFBP3|3486|insulin-like growth factor binding protein 3##AK075483|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095991|IGFBP3|3486|insulin-like growth factor binding protein 3##AK123735|IGFBP3|3486|insulin-like growth factor binding protein 3##AK055632|IGFBP3|3486|insulin-like growth factor binding protein 3##AK056274|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091706|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091745|IGFBP3|3486|insulin-like growth factor binding protein 3##AK092447|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095408|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095864|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095869|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095900|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095907|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095974|IGFBP3|3486|insulin-like growth factor binding protein 3##AK097201|IGFBP3|3486|insulin-like growth factor binding protein 3##AK122873|IGFBP3|3486|insulin-like growth factor binding protein 3##AK125224|IGFBP3|3486|insulin-like growth factor binding protein 3##AK127537|IGFBP3|3486|insulin-like growth factor binding protein 3##AK129951|IGFBP3|3486|insulin-like growth factor binding protein 3##AK130884|IGFBP3|3486|insulin-like growth factor binding protein 3##AK297767|IGFBP3|3486|insulin-like growth factor binding protein 3##AK298143|IGFBP3|3486|insulin-like growth factor binding protein 3##AK315668|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000598|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_001013398|IGFBP3|3486|insulin-like growth factor binding protein 3##X64875|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000596|IGFBP1|3484|insulin-like growth factor binding protein 1##AK314925|IGFBP1|3484|insulin-like growth factor binding protein 1##BC057806|IGFBP1|3484|insulin-like growth factor binding protein 1##M31145|IGFBP1|3484|insulin-like growth factor binding protein 1##BC035263|IGFBP1|3484|insulin-like growth factor binding protein 1##X12385|IGFBP1|3484|insulin-like growth factor binding protein 1##M20841|IGFBP1|3484|insulin-like growth factor binding protein 1##X13405|IGFBP1|3484|insulin-like growth factor binding protein 1##Y00856|IGFBP1|3484|insulin-like growth factor binding protein 1##BT019685|IGFBP1|3484|insulin-like growth factor binding protein 1##FJ795026|IGFBP1|3484|insulin-like growth factor binding protein 1##BC071791|TNS3|64759|tensin 3##CR749644|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3	0.989541	0.046411	denovo_WM_7:-15:0.930
chr9	6723430	6723610	reg1004117.p1	6.477	+	AK310439 NM_001146696	-2658	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-77893	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-310115	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	34147	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	34519	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1076195	-	AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123	0.0	0.0	
chr13	115105428	115105534	reg1005753.p1	6.476	+	TSC_hg19_v1_chr13_+_115080005 NM_001164144 NM_001164145 NM_032436 AK096346 BC065237	-25495	+	TSC_hg19_v1_chr13_+_115047085 AY013250 NM_023011 NM_080687 BC023569 BC047735 AK294545 AK302003 AF318575	-58367	+	TSC_hg19_v1_chr13_+_115000402 AK296424 BC017244 BC010875 AK315302 U18291 AB590520 AF164598 CU677877	-105019	+	None	None	None	None	None	None	None	None	None	NM_001164144|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_001164145|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_032436|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AK096346|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##BC065237|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AY013250|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_023011|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_080687|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC023569|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC047735|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK294545|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK302003|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AF318575|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK296424|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC017244|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC010875|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AK315302|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##U18291|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AF164598|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)	1.248509	0.906749	CTCF.p2:-16:0.907	denovo_WM_7:95:0.896
chr4	17386035	17386181	reg1004578.p1	6.476	+	AF052389 TSC_hg19_v1_chr4_-_16900372 NM_001130834 NM_001290	-485723	-	AK226029 TSC_hg19_v1_chr4_-_16900258	-485849	-	AK300119 AB463834 DQ891981 DQ895171 AK312881 TSC_hg19_v1_chr4_-_16900210 AF068651 AF047337 AF064492 AF064493 BC034019	-485982	-	AB528218 AM393718 DQ891926 DQ895113 CU674280 TSC_hg19_v1_chr4_-_17513714 X04882 BC000576 AK124382 AK296622 AK223437 AK289773 NM_000320	127658	-	BC127863 NM_001079827	130679	+	TSC_hg19_v1_chr4_+_17578852 NM_015907	192774	+	AF052389|LDB2|9079|LIM domain binding 2##NM_001130834|LDB2|9079|LIM domain binding 2##NM_001290|LDB2|9079|LIM domain binding 2##AK226029|LDB2|9079|LIM domain binding 2##AK300119|LDB2|9079|LIM domain binding 2##DQ891981|LDB2|9079|LIM domain binding 2##DQ895171|LDB2|9079|LIM domain binding 2##AK312881|LDB2|9079|LIM domain binding 2##AF068651|LDB2|9079|LIM domain binding 2##AF047337|LDB2|9079|LIM domain binding 2##AF064492|LDB2|9079|LIM domain binding 2##AF064493|LDB2|9079|LIM domain binding 2##BC034019|LDB2|9079|LIM domain binding 2##AM393718|QDPR|5860|quinoid dihydropteridine reductase##DQ891926|QDPR|5860|quinoid dihydropteridine reductase##DQ895113|QDPR|5860|quinoid dihydropteridine reductase##X04882|QDPR|5860|quinoid dihydropteridine reductase##BC000576|QDPR|5860|quinoid dihydropteridine reductase##AK124382|QDPR|5860|quinoid dihydropteridine reductase##AK296622|QDPR|5860|quinoid dihydropteridine reductase##AK223437|QDPR|5860|quinoid dihydropteridine reductase##AK289773|QDPR|5860|quinoid dihydropteridine reductase##NM_000320|QDPR|5860|quinoid dihydropteridine reductase##BC127863|CLRN2|645104|clarin 2##NM_001079827|CLRN2|645104|clarin 2##NM_015907|LAP3|51056|leucine aminopeptidase 3	0.997198	0.0	denovo_WM_7:-89:0.976	denovo_WM_7:107:0.979
chr17	74263689	74263849	reg1004088.p2	6.475	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	-2262	+	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	-2485	+	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	-27321	-	EU832276 EU832361 BC131559 AL136774 NM_032134	39901	-	TSC_hg19_v1_chr17_-_74349591 CU679229 BC009012	85880	-	TSC_hg19_v1_chr17_-_74349948 D61391 AK312637	86160	-	BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##EU832276|QRICH2|84074|glutamine rich 2##EU832361|QRICH2|84074|glutamine rich 2##BC131559|QRICH2|84074|glutamine rich 2##AL136774|QRICH2|84074|glutamine rich 2##NM_032134|QRICH2|84074|glutamine rich 2##BC009012|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1##D61391|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1##AK312637|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1	0.994169	0.026454	denovo_WM_7:-12:0.779
chr8	41587946	41588060	reg1006635.p1	6.475	+	AK223578 AK129864 BC007930 BC030957 BC014467 NM_001142445 NM_020478 NM_020480	-65240	-	AB587362 AK057898 NM_152568	-83128	-	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	-152309	+	M28880 NM_000037 NM_020475 NM_020476 NM_020477 X16609 TSC_hg19_v1_chr8_-_41655141	67137	-	AK026601 TSC_hg19_v1_chr8_+_41685847	97822	+	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	166307	-	AK223578|ANK1|286|ankyrin 1, erythrocytic##AK129864|ANK1|286|ankyrin 1, erythrocytic##BC007930|ANK1|286|ankyrin 1, erythrocytic##BC030957|ANK1|286|ankyrin 1, erythrocytic##BC014467|ANK1|286|ankyrin 1, erythrocytic##NM_001142445|ANK1|286|ankyrin 1, erythrocytic##NM_020478|ANK1|286|ankyrin 1, erythrocytic##NM_020480|ANK1|286|ankyrin 1, erythrocytic##AK057898|NKX6-3|157848|NK6 homeobox 3##NM_152568|NKX6-3|157848|NK6 homeobox 3##NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##M28880|ANK1|286|ankyrin 1, erythrocytic##NM_000037|ANK1|286|ankyrin 1, erythrocytic##NM_020475|ANK1|286|ankyrin 1, erythrocytic##NM_020476|ANK1|286|ankyrin 1, erythrocytic##NM_020477|ANK1|286|ankyrin 1, erythrocytic##X16609|ANK1|286|ankyrin 1, erythrocytic##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic	1.026731	0.0	denovo_WM_7:-24:0.416	denovo_WM_7:-25:0.416
chr1	17468466	17468619	reg1007027.p3	6.474	+	AB587350 AB023211 AB030176 BC009701 TSC_hg19_v1_chr1_-_17445947 AK295783 NM_007365	-22635	-	DQ403007 TSC_hg19_v1_chr1_-_17380528 AK312056 U17248 BC007840 NM_003000	-87967	-	AL354615 AY461712 TSC_hg19_v1_chr1_-_17338424 BC030267 AK290210 NM_001141973 NM_001141974 NM_022089	-130159	-	AK314644 AK026652 AK225541 NM_013358 AB033768 BC130574 BC136402 HQ258487	63123	+	AB026831 NM_016233 BC109091 BC041592 BC109092	107057	+	AF229067 AK314839 NM_012387 AB017919 AK290507 AK309637 BC025718 AB527709 CU693030	166161	+	AB023211|PADI2|11240|peptidyl arginine deiminase, type II##AB030176|PADI2|11240|peptidyl arginine deiminase, type II##BC009701|PADI2|11240|peptidyl arginine deiminase, type II##AK295783|PADI2|11240|peptidyl arginine deiminase, type II##NM_007365|PADI2|11240|peptidyl arginine deiminase, type II##DQ403007|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AK312056|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##U17248|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##BC007840|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##NM_003000|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AL354615|ATP13A2|23400|ATPase type 13A2##AY461712|ATP13A2|23400|ATPase type 13A2##BC030267|ATP13A2|23400|ATPase type 13A2##AK290210|ATP13A2|23400|ATPase type 13A2##NM_001141973|ATP13A2|23400|ATPase type 13A2##NM_001141974|ATP13A2|23400|ATPase type 13A2##NM_022089|ATP13A2|23400|ATPase type 13A2##AK314644|PADI1|29943|peptidyl arginine deiminase, type I##AK026652|PADI1|29943|peptidyl arginine deiminase, type I##AK225541|PADI1|29943|peptidyl arginine deiminase, type I##NM_013358|PADI1|29943|peptidyl arginine deiminase, type I##AB033768|PADI1|29943|peptidyl arginine deiminase, type I##BC130574|PADI1|29943|peptidyl arginine deiminase, type I##BC136402|PADI1|29943|peptidyl arginine deiminase, type I##HQ258487|PADI1|29943|peptidyl arginine deiminase, type I##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III##AF229067|PADI4|23569|peptidyl arginine deiminase, type IV##AK314839|PADI4|23569|peptidyl arginine deiminase, type IV##NM_012387|PADI4|23569|peptidyl arginine deiminase, type IV##AB017919|PADI4|23569|peptidyl arginine deiminase, type IV##AK290507|PADI4|23569|peptidyl arginine deiminase, type IV##AK309637|PADI4|23569|peptidyl arginine deiminase, type IV##BC025718|PADI4|23569|peptidyl arginine deiminase, type IV	0.572543	0.0	denovo_WM_7:-7:0.552
chr7	100148067	100148247	reg1001489.p2	6.472	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	-11250	+	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	-11346	+	AK124773 NM_173564	-66608	+	NM_001168682	23112	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	35580	-	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	35618	-	AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4	0.0	0.0	
chr7	30323781	30323895	reg1004475.p2	6.472	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	-149256	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-255547	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-255837	+	AF513707 NM_147128	84	+	TSC_hg19_v1_chr7_+_30324515 AF527533	711	+	TSC_hg19_v1_chr7_+_30324634 AY054122	818	+	NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AY054122|ZNRF2|223082|zinc and ring finger 2	0.962448	0.0	denovo_WM_7:-35:0.871
chr9	33159113	33159257	reg1007577.p1	6.472	+	TSC_hg19_v1_chr9_-_33076673 NM_018225	-82493	-	CU678268 DQ893005 DQ896251 TSC_hg19_v1_chr9_-_33076667 AK001667 BC002876 EF011613 AK225587 AK304767 AK225559	-82548	-	BT007292 CU678881 DQ891091 EU176556 TSC_hg19_v1_chr9_+_33026519	-132685	+	TSC_hg19_v1_chr9_-_33167158 AK316294	7939	-	AB590749 X55415 TSC_hg19_v1_chr9_-_33167196 AK296928 AK312797	8001	-	D29805 X13223 X14085 M22921 U10474 TSC_hg19_v1_chr9_-_33167262	8062	-	NM_018225|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##DQ893005|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##DQ896251|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK001667|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##BC002876|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##EF011613|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK225587|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK304767|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK225559|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##BT007292|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##DQ891091|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##EU176556|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##AK316294|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X55415|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AK296928|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AK312797|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##D29805|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X13223|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X14085|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##M22921|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##U10474|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	0.115251	0.0	
chr10	65043062	65043147	reg1005009.p1	6.471	+	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	-14189	-	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	-149958	+	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	-150073	+	TSC_hg19_v1_chr10_+_65224979 BC007866 AK314171	181880	+	AK027280 EF068222 NM_032776 TSC_hg19_v1_chr10_-_65225738	182574	-	BC067238 TSC_hg19_v1_chr10_-_65225775	182671	-	BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C##AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##BC007866|LOC84989|84989|uncharacterized LOC84989##AK314171|LOC84989|84989|uncharacterized LOC84989##AK027280|JMJD1C|221037|jumonji domain containing 1C##EF068222|JMJD1C|221037|jumonji domain containing 1C##NM_032776|JMJD1C|221037|jumonji domain containing 1C##BC067238|JMJD1C|221037|jumonji domain containing 1C	0.997023	0.0	denovo_WM_7:30:0.313	denovo_WM_7:31:0.313	denovo_WM_7:32:0.313
chr8	11395265	11395331	reg1005368.p1	6.471	+	S76617 NM_001715 BC018703 BC004473 BC038555	-43705	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-71069	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-190294	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	166422	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	231970	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	264886	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.0	0.0	
chr16	70322389	70322537	reg1005987.p1	6.470	+	TSC_hg19_v1_chr16_-_70285844 BC052252 NM_058219 BC039194	-36630	-	AF448856 BC039068 NM_173619 AL833339 AK074773 CU687316 BC062573	-114359	+	TSC_hg19_v1_chr16_+_70148247 AK292502 AK302987	-174216	+	BC011451 TSC_hg19_v1_chr16_-_70323364 AK299098	904	-	TSC_hg19_v1_chr16_-_70323413 AK222824 AK225116 AK307782 D32050 NM_001605	948	-	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	10613	+	BC052252|EXOSC6|118460|exosome component 6##NM_058219|EXOSC6|118460|exosome component 6##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##BC039068|CLEC18C|283971|C-type lectin domain family 18, member C##NM_173619|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##BC062573|CLEC18C|283971|C-type lectin domain family 18, member C##AK292502|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##AK302987|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##BC011451|AARS|16|alanyl-tRNA synthetase##AK299098|AARS|16|alanyl-tRNA synthetase##AK222824|AARS|16|alanyl-tRNA synthetase##AK225116|AARS|16|alanyl-tRNA synthetase##AK307782|AARS|16|alanyl-tRNA synthetase##D32050|AARS|16|alanyl-tRNA synthetase##NM_001605|AARS|16|alanyl-tRNA synthetase##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B	0.992509	0.0	
chr19	4088988	4089168	reg1006034.p2	6.470	+	BC113511 TSC_hg19_v1_chr19_-_4066828 AF000561 NM_015898 BC064505	-22261	-	TSC_hg19_v1_chr19_-_4065504 BC084568	-23582	-	TSC_hg19_v1_chr19_+_4007733 BC066895 AK022481 BC029874 NM_015897 AK222726 AB464092 AF077952 DQ892419 DQ895633 BC010047	-81349	+	TSC_hg19_v1_chr19_-_4103205 AK093125	14134	-	AB463893 DQ893601 DQ895060 L11285 BC018645 TSC_hg19_v1_chr19_-_4124114 BX538081	34914	-	TSC_hg19_v1_chr19_-_4124145 BC000471 NM_030662	35055	-	BC113511|ZBTB7A|51341|zinc finger and BTB domain containing 7A##AF000561|ZBTB7A|51341|zinc finger and BTB domain containing 7A##NM_015898|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC084568|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC066895|PIAS4|51588|protein inhibitor of activated STAT, 4##AK022481|PIAS4|51588|protein inhibitor of activated STAT, 4##BC029874|PIAS4|51588|protein inhibitor of activated STAT, 4##NM_015897|PIAS4|51588|protein inhibitor of activated STAT, 4##AK222726|PIAS4|51588|protein inhibitor of activated STAT, 4##AF077952|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ892419|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ895633|PIAS4|51588|protein inhibitor of activated STAT, 4##BC010047|PIAS4|51588|protein inhibitor of activated STAT, 4##AK093125|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ893601|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ895060|MAP2K2|5605|mitogen-activated protein kinase kinase 2##L11285|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BC018645|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BX538081|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BC000471|MAP2K2|5605|mitogen-activated protein kinase kinase 2##NM_030662|MAP2K2|5605|mitogen-activated protein kinase kinase 2	1.996143	0.0	denovo_WM_7:-101:0.230	denovo_WM_7:-102:0.230	denovo_WM_7:-103:0.230	denovo_WM_7:-104:0.230
chr3	58938374	58938494	reg1006096.p2	6.470	+	BC015359 TSC_hg19_v1_chr3_-_58652501 AK127546 NM_138805 AY358677	-285913	-	AF035283 NM_001076778 NM_007177	-374944	-	AB023811 TSC_hg19_v1_chr3_-_58563116 BC010561 AL050264 AK055443 AK128791 BC093012	-375325	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	97274	-	BC075863 TSC_hg19_v1_chr3_-_59035746	97307	-	BC050317 TSC_hg19_v1_chr3_-_59035759	97326	-	BC015359|FAM3D|131177|family with sequence similarity 3, member D##AK127546|FAM3D|131177|family with sequence similarity 3, member D##NM_138805|FAM3D|131177|family with sequence similarity 3, member D##AY358677|FAM3D|131177|family with sequence similarity 3, member D##AF035283|FAM107A|11170|family with sequence similarity 107, member A##NM_001076778|FAM107A|11170|family with sequence similarity 107, member A##NM_007177|FAM107A|11170|family with sequence similarity 107, member A##AB023811|FAM107A|11170|family with sequence similarity 107, member A##BC010561|FAM107A|11170|family with sequence similarity 107, member A##AL050264|FAM107A|11170|family with sequence similarity 107, member A##AK055443|FAM107A|11170|family with sequence similarity 107, member A##AK128791|FAM107A|11170|family with sequence similarity 107, member A##BC093012|FAM107A|11170|family with sequence similarity 107, member A##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##BC050317|C3orf67|200844|chromosome 3 open reading frame 67	0.0	0.0	
chr6	135409061	135409210	reg1004470.p2	6.470	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-33141	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-33247	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-137903	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	93313	+	TSC_hg19_v1_chr6_+_135502507 BC064955	93360	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	93451	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr16	75044488	75044628	reg1006910.p1	6.469	+	TSC_hg19_v1_chr16_+_75033257 AK294434 BC007235 AF378524 AL136903	-11298	+	TSC_hg19_v1_chr16_+_75032911 NM_032268	-11664	+	TSC_hg19_v1_chr16_-_75019011 NM_030581	-25533	-	CU690528 TSC_hg19_v1_chr16_-_75150650 BC040279	106079	-	AY092767 BC047902 NM_153486 NM_194436 TSC_hg19_v1_chr16_-_75150679	106121	-	AK296560 TSC_hg19_v1_chr16_+_75182389 AK291372 NM_153688 AK094761 AK308134 BC064604	137876	+	AK294434|ZNRF1|84937|zinc and ring finger 1##BC007235|ZNRF1|84937|zinc and ring finger 1##AF378524|ZNRF1|84937|zinc and ring finger 1##AL136903|ZNRF1|84937|zinc and ring finger 1##NM_032268|ZNRF1|84937|zinc and ring finger 1##NM_030581|WDR59|79726|WD repeat domain 59##BC040279|LDHD|197257|lactate dehydrogenase D##AY092767|LDHD|197257|lactate dehydrogenase D##BC047902|LDHD|197257|lactate dehydrogenase D##NM_153486|LDHD|197257|lactate dehydrogenase D##NM_194436|LDHD|197257|lactate dehydrogenase D##AK296560|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK291372|ZFP1|162239|zinc finger protein 1 homolog (mouse)##NM_153688|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK094761|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK308134|ZFP1|162239|zinc finger protein 1 homolog (mouse)##BC064604|ZFP1|162239|zinc finger protein 1 homolog (mouse)	1.961417	0.0	denovo_WM_7:49:0.671	denovo_WM_7:50:0.268	denovo_WM_7:64:0.431	denovo_WM_7:65:0.539
chr2	64810341	64810521	reg1005897.p2	6.469	+	TSC_hg19_v1_chr2_+_64751580 AL833962	-58829	+	TSC_hg19_v1_chr2_+_64751481 NM_001002243 NM_017657 NM_203437 BC047529 AK000087 AK222821	-58947	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	-128783	+	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	70418	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	70616	-	TSC_hg19_v1_chr2_-_65090764 AK097952	280310	-	AL833962|AFTPH|54812|aftiphilin##NM_001002243|AFTPH|54812|aftiphilin##NM_017657|AFTPH|54812|aftiphilin##NM_203437|AFTPH|54812|aftiphilin##BC047529|AFTPH|54812|aftiphilin##AK000087|AFTPH|54812|aftiphilin##AK222821|AFTPH|54812|aftiphilin##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2	0.999003	0.0	denovo_WM_7:26:0.427	denovo_WM_7:27:0.479
chr9	132355606	132355745	reg1005971.p1	6.469	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	-104234	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	-104321	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	-272380	+	BC112353 AK093122 AX747938 NM_199350	27362	-	TSC_hg19_v1_chr9_+_132388441 NM_014064 AK290957 AK292332 AK298840 AK307056 AK313829	32750	+	TSC_hg19_v1_chr9_+_132388461 BC001396 BC033234 AF110776	32795	+	BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##BC112353|C9orf50|375759|chromosome 9 open reading frame 50##AK093122|C9orf50|375759|chromosome 9 open reading frame 50##NM_199350|C9orf50|375759|chromosome 9 open reading frame 50##NM_014064|METTL11A|28989|methyltransferase like 11A##AK290957|METTL11A|28989|methyltransferase like 11A##AK292332|METTL11A|28989|methyltransferase like 11A##AK298840|METTL11A|28989|methyltransferase like 11A##AK307056|METTL11A|28989|methyltransferase like 11A##AK313829|METTL11A|28989|methyltransferase like 11A##BC001396|METTL11A|28989|methyltransferase like 11A##BC033234|METTL11A|28989|methyltransferase like 11A##AF110776|METTL11A|28989|methyltransferase like 11A	0.996973	0.0	denovo_WM_7:8:0.932
chrX	97164424	97164554	reg1005917.p1	6.468	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	-1025519	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	-1224535	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	-1224738	+	EF676096 NM_001105243 NM_001184880 NM_020766 TSC_hg19_v1_chrX_-_99665272	2500784	-	NM_022144 AF191770 BC034030 AF291656 AF234259 AY358706 AB055421 AB590911 CU689814	2675412	+	BT006977 CR457115 AB527646 DQ890668 DQ893849 TSC_hg19_v1_chrX_-_99891804 AF053453 AK299176 AF133426 AK309581 AY358825 AB097016 AF043906 U84895 BC012389 NM_003270 AK075072 AB209876 AK315773 AK300852	2727279	-	NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa##BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##EF676096|PCDH19|57526|protocadherin 19##NM_001105243|PCDH19|57526|protocadherin 19##NM_001184880|PCDH19|57526|protocadherin 19##NM_020766|PCDH19|57526|protocadherin 19##NM_022144|TNMD|64102|tenomodulin##AF191770|TNMD|64102|tenomodulin##BC034030|TNMD|64102|tenomodulin##AF291656|TNMD|64102|tenomodulin##AF234259|TNMD|64102|tenomodulin##AY358706|TNMD|64102|tenomodulin##AB055421|TNMD|64102|tenomodulin##BT006977|TSPAN6|7105|tetraspanin 6##CR457115|TSPAN6|7105|tetraspanin 6##DQ890668|TSPAN6|7105|tetraspanin 6##DQ893849|TSPAN6|7105|tetraspanin 6##AF053453|TSPAN6|7105|tetraspanin 6##AK299176|TSPAN6|7105|tetraspanin 6##AF133426|TSPAN6|7105|tetraspanin 6##AK309581|TSPAN6|7105|tetraspanin 6##AY358825|TSPAN6|7105|tetraspanin 6##AB097016|TSPAN6|7105|tetraspanin 6##AF043906|TSPAN6|7105|tetraspanin 6##U84895|TSPAN6|7105|tetraspanin 6##BC012389|TSPAN6|7105|tetraspanin 6##NM_003270|TSPAN6|7105|tetraspanin 6##AK075072|TSPAN6|7105|tetraspanin 6##AB209876|TSPAN6|7105|tetraspanin 6##AK315773|TSPAN6|7105|tetraspanin 6##AK300852|TSPAN6|7105|tetraspanin 6	1.001541	0.0	denovo_WM_7:95:0.757
chr17	7787084	7787264	reg1006580.p1	6.467	+	TSC_hg19_v1_chr17_+_7761320 BC060779 AK289520	-25829	+	BC033861 NM_032356 BC051846 TSC_hg19_v1_chr17_-_7761246	-25966	-	AK057061 NM_144607	-26111	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	937	+	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	4927	+	TSC_hg19_v1_chr17_+_7812703 AK096555	25586	+	BC060779|CYB5D1|124637|cytochrome b5 domain containing 1##AK289520|CYB5D1|124637|cytochrome b5 domain containing 1##BC033861|LSMD1|84316|LSM domain containing 1##NM_032356|LSMD1|84316|LSM domain containing 1##BC051846|LSMD1|84316|LSM domain containing 1##AK057061|CYB5D1|124637|cytochrome b5 domain containing 1##NM_144607|CYB5D1|124637|cytochrome b5 domain containing 1##NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3	1.742373	0.0	denovo_WM_7:-16:0.787	denovo_WM_7:39:0.570
chr19	19250512	19250656	reg1006028.p1	6.467	+	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	-1309	-	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	-1330	-	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	-75775	+	TSC_hg19_v1_chr19_-_19281067 AK057210	30483	-	TSC_hg19_v1_chr19_-_19281094 NM_001145785	30509	-	TSC_hg19_v1_chr19_-_19302962 X68502 EU831418 EU831443 EU831511 EU831535 X63380 BC064537 BC000489 BC004449 BC010178 BC010931 AK301086 AK316328 BC157868 BC171869	52380	-	BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK057210|MEF2B|100271849|myocyte enhancer factor 2B##NM_001145785|MEF2B|100271849|myocyte enhancer factor 2B##X68502|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##EU831418|MEF2BNB|729991|MEF2B neighbor##EU831443|MEF2BNB|729991|MEF2B neighbor##EU831511|MEF2BNB|729991|MEF2B neighbor##EU831535|MEF2BNB|729991|MEF2B neighbor##X63380|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC064537|MEF2BNB|729991|MEF2B neighbor##BC000489|MEF2BNB|729991|MEF2B neighbor##BC004449|MEF2BNB|729991|MEF2B neighbor##BC010178|MEF2BNB|729991|MEF2B neighbor##BC010931|MEF2BNB|729991|MEF2B neighbor##AK301086|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##AK316328|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC157868|MEF2BNB|729991|MEF2B neighbor##BC171869|MEF2BNB|729991|MEF2B neighbor	0.345926	0.078614	denovo_WM_7:-12:0.346
chr10	30530167	30530319	reg1006259.p1	6.466	+	TSC_hg19_v1_chr10_-_30348516 AK308850 NM_020848 BC071601	-181749	-	TSC_hg19_v1_chr10_-_30316350 BC047548	-213812	-	TSC_hg19_v1_chr10_-_30025865 AK307640	-504337	-	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	107990	-	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	192696	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	192878	+	AK308850|KIAA1462|57608|KIAA1462##NM_020848|KIAA1462|57608|KIAA1462##BC071601|KIAA1462|57608|KIAA1462##BC047548|KIAA1462|57608|KIAA1462##AK307640|SVIL|6840|supervillin##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8	0.720123	0.49818	CTCF.p2:3:0.498	denovo_WM_7:-23:0.646
chr1	204486338	204486473	reg1005920.p2	6.466	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	-795	+	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	-903	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-22640	-	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	168186	-	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	311407	+	TSC_hg19_v1_chr1_+_204839989 AK308686	353578	+	AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AK308686|NFASC|23114|neurofascin	0.990341	0.0	denovo_WM_7:-24:0.544	denovo_WM_7:-27:0.362
chr16	14700173	14700353	reg1006954.p1	6.466	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-406065	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-419745	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-535177	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	23765	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	23870	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	26476	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	0.991452	0.0	denovo_WM_7:0:0.548	denovo_WM_7:6:0.233
chr7	137713336	137713487	reg1004588.p2	6.466	+	TSC_hg19_v1_chr7_-_137686833 NM_001253775 NM_194071	-26559	-	AK131517 TSC_hg19_v1_chr7_-_137686812	-26599	-	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	-26617	-	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	47807	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	431581	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	431825	+	NM_001253775|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_194071|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK131517|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24	0.683205	0.0	denovo_WM_7:0:0.511
chr7	38945016	38945195	reg1007114.p1	6.466	+	TSC_hg19_v1_chr7_-_38671019 X81438 AF034996 NM_001635 NM_139316	-274028	-	AF498097 CU689866 BC034376 AK291447 TSC_hg19_v1_chr7_-_38670974	-274143	-	TSC_hg19_v1_chr7_-_38389583 BC035592	-555516	-	HQ257912 TSC_hg19_v1_chr7_-_38948792 BX648347 BC044851 AK314556 NM_014396 NM_080631 U87309	3688	-	NM_001166018 NM_007252	72503	+	TSC_hg19_v1_chr7_+_39606002 AK314937 NM_020192 AK293511 AF226046 BC022043 CR457198 DQ892829 DQ896074 DQ896075	660864	+	X81438|AMPH|273|amphiphysin##AF034996|AMPH|273|amphiphysin##NM_001635|AMPH|273|amphiphysin##NM_139316|AMPH|273|amphiphysin##AF498097|AMPH|273|amphiphysin##BC034376|AMPH|273|amphiphysin##AK291447|AMPH|273|amphiphysin##BC035592|TRGV5|6978|T cell receptor gamma variable 5##HQ257912|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BX648347|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BC044851|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##AK314556|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_014396|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_080631|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##U87309|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_001166018|POU6F2|11281|POU class 6 homeobox 2##NM_007252|POU6F2|11281|POU class 6 homeobox 2##AK314937|YAE1D1|57002|Yae1 domain containing 1##NM_020192|YAE1D1|57002|Yae1 domain containing 1##AF226046|YAE1D1|57002|Yae1 domain containing 1##BC022043|YAE1D1|57002|Yae1 domain containing 1##CR457198|YAE1D1|57002|Yae1 domain containing 1##DQ892829|YAE1D1|57002|Yae1 domain containing 1##DQ896074|YAE1D1|57002|Yae1 domain containing 1##DQ896075|YAE1D1|57002|Yae1 domain containing 1	0.0	0.0	
chr10	13789047	13789178	reg1004246.p1	6.465	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-39423	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-160125	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-160169	+	TSC_hg19_v1_chr10_-_14050453 AK001072	261380	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	583738	-	TSC_hg19_v1_chr10_-_14646259 BC064407	857205	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.993966	0.0	
chr1	159797534	159797688	reg1007086.p1	6.464	+	TSC_hg19_v1_chr1_+_159796662 BC109194	-942	+	TSC_hg19_v1_chr1_+_159796539 AK074669 AF146761	-1033	+	NM_020125 TSC_hg19_v1_chr1_+_159796486	-1128	+	AK096506 NM_001134233	27525	-	HQ258612 BC132893 BC132895 NM_001013661	34767	-	BC089391 BC027874 NM_012337 BC064386 AF094758 AK308262 AK225566 AK225582 AK292249	72314	-	BC109194|SLAMF8|56833|SLAM family member 8##AK074669|SLAMF8|56833|SLAM family member 8##AF146761|SLAMF8|56833|SLAM family member 8##NM_020125|SLAMF8|56833|SLAM family member 8##AK096506|C1orf204|284677|chromosome 1 open reading frame 204##NM_001134233|C1orf204|284677|chromosome 1 open reading frame 204##HQ258612|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC132893|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC132895|VSIG8|391123|V-set and immunoglobulin domain containing 8##NM_001013661|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC089391|CCDC19|25790|coiled-coil domain containing 19##BC027874|CCDC19|25790|coiled-coil domain containing 19##NM_012337|CCDC19|25790|coiled-coil domain containing 19##BC064386|CCDC19|25790|coiled-coil domain containing 19##AF094758|CCDC19|25790|coiled-coil domain containing 19##AK308262|CCDC19|25790|coiled-coil domain containing 19##AK225566|CCDC19|25790|coiled-coil domain containing 19##AK225582|CCDC19|25790|coiled-coil domain containing 19##AK292249|CCDC19|25790|coiled-coil domain containing 19	0.992857	0.0	denovo_WM_7:23:0.922
chr12	113504294	113504426	reg1006578.p1	6.462	+	NM_004416 BC048216	-8670	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	-88020	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-128020	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	69052	-	AF086713 AB208935 AK294350 NM_001193520 NM_004658	69671	-	AK308987 NM_001144872	83244	+	NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B	0.988997	0.0	denovo_WM_7:-19:0.820
chr10	52213787	52213913	reg1006340.p1	6.461	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-205510	-	NM_018232	-375965	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-386128	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	169853	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	285860	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	431543	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	1.054748	0.0	
chr12	25887572	25887693	reg1006203.p1	6.461	+	AK296816 NM_001145727	-86145	-	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	-181436	-	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-483691	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	224369	+	AK290055 NM_001164747	239055	+	NM_001164746 AK292333	317861	+	AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AK290055|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_001164747|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_001164746|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AK292333|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	0.0	0.0	
chr5	133968497	133968611	reg1006863.p1	6.461	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	-57	-	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-106749	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-107191	+	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	15877	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	105756	+	NM_014829 TSC_hg19_v1_chr5_+_134094470 AK126011 AK291788 BC105598 AF106680 AB018344 BC012304 CU680282	125989	+	BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand##NM_014829|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK126011|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK291788|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC105598|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AF106680|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AB018344|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC012304|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.0	0.0	
chr5	33423273	33423387	reg1005725.p2	6.461	+	BC131540 X52282 TSC_hg19_v1_chr5_+_32711843 AF025998	-711525	+	AK290870 NM_000908 NM_001204375 M59305	-711842	+	NM_001204376 AK300094 AK308301	-712580	+	AK292346 TSC_hg19_v1_chr5_+_33440874 NM_152295	17526	+	TSC_hg19_v1_chr5_+_33441070 AK095852 AK293620 AK311361 AK315713 AK296783 M63180 BC010578 AK308342 BC000517 BC088355 AK222804 AB384811 CU674250 EU831444 DQ891416 DQ894590	17809	+	BC139900 BC131733 AY358745 TSC_hg19_v1_chr5_-_33892090 BC058841 NM_030955	468715	-	BC131540|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##X52282|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AF025998|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK292346|TARS|6897|threonyl-tRNA synthetase##NM_152295|TARS|6897|threonyl-tRNA synthetase##AK095852|TARS|6897|threonyl-tRNA synthetase##AK293620|TARS|6897|threonyl-tRNA synthetase##AK311361|TARS|6897|threonyl-tRNA synthetase##AK315713|TARS|6897|threonyl-tRNA synthetase##AK296783|TARS|6897|threonyl-tRNA synthetase##M63180|TARS|6897|threonyl-tRNA synthetase##BC010578|TARS|6897|threonyl-tRNA synthetase##AK308342|TARS|6897|threonyl-tRNA synthetase##BC000517|TARS|6897|threonyl-tRNA synthetase##BC088355|TARS|6897|threonyl-tRNA synthetase##AK222804|TARS|6897|threonyl-tRNA synthetase##EU831444|TARS|6897|threonyl-tRNA synthetase##DQ891416|TARS|6897|threonyl-tRNA synthetase##DQ894590|TARS|6897|threonyl-tRNA synthetase##BC139900|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC131733|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AY358745|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC058841|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##NM_030955|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12	0.499907	0.179958	denovo_WM_7:-37:0.267
chr6	119469864	119469992	reg1006355.p1	6.461	+	TSC_hg19_v1_chr6_-_119399821 BC060769 NM_024581 AK308316	-70020	-	CU687406 AB385245 EU832813 GQ129264 TSC_hg19_v1_chr6_-_119399478	-70504	-	TSC_hg19_v1_chr6_-_119256325 NM_153255	-213601	-	BX538186 AK091682 AX747126 NM_001100411	418	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	200993	-	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	2185715	-	BC060769|FAM184A|79632|family with sequence similarity 184, member A##NM_024581|FAM184A|79632|family with sequence similarity 184, member A##AK308316|FAM184A|79632|family with sequence similarity 184, member A##EU832813|FAM184A|79632|family with sequence similarity 184, member A##GQ129264|FAM184A|79632|family with sequence similarity 184, member A##NM_153255|MCM9|254394|minichromosome maintenance complex component 9##BX538186|FAM184A|79632|family with sequence similarity 184, member A##AK091682|FAM184A|79632|family with sequence similarity 184, member A##NM_001100411|FAM184A|79632|family with sequence similarity 184, member A##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170	0.991445	0.955375	denovo_WM_7:38:0.335	denovo_WM_7:39:0.578	CTCF.p2:-40:0.955
chr8	105395757	105395904	reg1006972.p1	6.461	+	TSC_hg19_v1_chr8_+_105352053 AF277290 AF305068 AK095417 BC069349 NM_030788	-43778	+	NM_014677 AK307790 AB018294 BC043144 AK308831 BC018057 AB384521 CU692140	-564255	+	AK126939 NM_001100117	-882855	+	CU689878 BC034395 D78011 NM_001385 TSC_hg19_v1_chr8_-_105479284	83385	-	CU689274 DQ892323 DQ895525 BC032109 AK289752 AF166350 TSC_hg19_v1_chr8_-_105601191 CR749434 AF064841	205345	-	TSC_hg19_v1_chr8_-_105601235 AK299374 NM_001135703 NM_013437	205417	-	AF277290|TM7SF4|81501|transmembrane 7 superfamily member 4##AF305068|TM7SF4|81501|transmembrane 7 superfamily member 4##AK095417|TM7SF4|81501|transmembrane 7 superfamily member 4##BC069349|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_030788|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_014677|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK307790|RIMS2|9699|regulating synaptic membrane exocytosis 2##AB018294|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC043144|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK308831|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC018057|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK126939|RIMS2|9699|regulating synaptic membrane exocytosis 2##NM_001100117|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC034395|DPYS|1807|dihydropyrimidinase##D78011|DPYS|1807|dihydropyrimidinase##NM_001385|DPYS|1807|dihydropyrimidinase##DQ892323|LRP12|29967|low density lipoprotein receptor-related protein 12##DQ895525|LRP12|29967|low density lipoprotein receptor-related protein 12##BC032109|LRP12|29967|low density lipoprotein receptor-related protein 12##AK289752|LRP12|29967|low density lipoprotein receptor-related protein 12##AF166350|LRP12|29967|low density lipoprotein receptor-related protein 12##CR749434|LRP12|29967|low density lipoprotein receptor-related protein 12##AF064841|LRP12|29967|low density lipoprotein receptor-related protein 12##AK299374|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_001135703|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_013437|LRP12|29967|low density lipoprotein receptor-related protein 12	0.996553	0.0	denovo_WM_7:9:0.718	denovo_WM_7:10:0.278
chr19	4400675	4400782	reg1005444.p1	6.460	+	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	-175	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	-335	-	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-57169	+	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	1988	+	AF272894 BC008288 NM_001171091	54561	-	AF272893 NM_025241	57061	-	BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6	0.0	1.249963	CTCF.p2:15:0.453	CTCF.p2:-92:0.797
chr3	167548009	167548131	reg1006765.p1	6.460	+	NM_001122752 TSC_hg19_v1_chr3_+_167453508 AK290082 BC018043 NM_005025 CR627434 Z81326	-94581	+	BC002506 NM_007217 AF022385 NM_145860 TSC_hg19_v1_chr3_-_167452681 BC016353 NM_145859 AK291130	-95419	-	TSC_hg19_v1_chr3_-_167371732 AK097556	-176347	-	TSC_hg19_v1_chr3_-_167813072 U55853 BC143232 BC143233 BC171748	265045	-	TSC_hg19_v1_chr3_-_167813684 AK307718 AK307557 NM_014498	265361	-	BC130520 BC143951 BC143952 AF164154 AF164155 AF164156 AF164157 NM_001105077 NM_001163999 NM_005241 X54989	1316009	-	NM_001122752|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##AK290082|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC018043|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##NM_005025|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##CR627434|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##Z81326|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC002506|PDCD10|11235|programmed cell death 10##NM_007217|PDCD10|11235|programmed cell death 10##AF022385|PDCD10|11235|programmed cell death 10##NM_145860|PDCD10|11235|programmed cell death 10##BC016353|PDCD10|11235|programmed cell death 10##NM_145859|PDCD10|11235|programmed cell death 10##AK291130|PDCD10|11235|programmed cell death 10##AK097556|WDR49|151790|WD repeat domain 49##U55853|GOLIM4|27333|golgi integral membrane protein 4##BC143232|GOLIM4|27333|golgi integral membrane protein 4##BC143233|GOLIM4|27333|golgi integral membrane protein 4##BC171748|GOLIM4|27333|golgi integral membrane protein 4##AK307718|GOLIM4|27333|golgi integral membrane protein 4##AK307557|GOLIM4|27333|golgi integral membrane protein 4##NM_014498|GOLIM4|27333|golgi integral membrane protein 4##BC130520|MECOM|2122|MDS1 and EVI1 complex locus##BC143951|MECOM|2122|MDS1 and EVI1 complex locus##BC143952|MECOM|2122|MDS1 and EVI1 complex locus##AF164154|MECOM|2122|MDS1 and EVI1 complex locus##AF164155|MECOM|2122|MDS1 and EVI1 complex locus##AF164156|MECOM|2122|MDS1 and EVI1 complex locus##AF164157|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105077|MECOM|2122|MDS1 and EVI1 complex locus##NM_001163999|MECOM|2122|MDS1 and EVI1 complex locus##NM_005241|MECOM|2122|MDS1 and EVI1 complex locus##X54989|MECOM|2122|MDS1 and EVI1 complex locus	0.990506	0.0	denovo_WM_7:-2:0.821
chr7	2598466	2598618	reg1006818.p1	6.460	+	AK131083 TSC_hg19_v1_chr7_-_2595352 NM_152743	-3177	-	TSC_hg19_v1_chr7_-_2595139 AK024482 BC015632	-3414	-	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	-39105	+	TSC_hg19_v1_chr7_+_2598633 BC071858 NM_001100390 NM_152558	85	+	TSC_hg19_v1_chr7_+_2598649 AK302053	113	+	TSC_hg19_v1_chr7_+_2598682 AK309646 BC043150	147	+	AK131083|BRAT1|221927|BRCA1-associated ATM activator 1##NM_152743|BRAT1|221927|BRCA1-associated ATM activator 1##AK024482|BRAT1|221927|BRCA1-associated ATM activator 1##BC015632|BRAT1|221927|BRCA1-associated ATM activator 1##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC071858|IQCE|23288|IQ motif containing E##NM_001100390|IQCE|23288|IQ motif containing E##NM_152558|IQCE|23288|IQ motif containing E##AK302053|IQCE|23288|IQ motif containing E##AK309646|IQCE|23288|IQ motif containing E##BC043150|IQCE|23288|IQ motif containing E	0.0	0.0	
chr1	160607921	160608038	reg1004997.p1	6.459	+	AK313496 TSC_hg19_v1_chr1_-_160549273 AF054815 AF054816 AF054817 AF054818 U96627 Y12632 NM_001184879 NM_001184881 NM_001184882 NM_003874	-58691	-	AB590277 CR541847 CU676492 DQ891708 DQ894872 BC020063 U82988 TSC_hg19_v1_chr1_-_160549268 AJ223324 AK296290 CR933666	-58732	-	AB590474 AJ306388 AJ277141 AK313549 BC113893 BC114495 AK310085 AL832854 BC090928 AK300013 AK301026 AY358159 TSC_hg19_v1_chr1_-_160493043 AK303990 AK125624 NM_001184714 NM_001184715 NM_001184716 NM_052931	-114950	-	AK314244 NM_003037 BC012602	9084	-	BT019813 CR457012 AB590257 CU688852 DQ896316 EU176422 M59904 M37766 BC016182 NM_001778 X06341 BC030224 AK225636 AK310624 AK310744	73607	-	AK298548 AK298499 AY358512 AL834424 AK301438 TSC_hg19_v1_chr1_+_160709067 AK290706 AK292097 AK292148 AK301137 AK301432 AF390894 AB027233 NM_021181 AF291815 AJ271869 AJ276429 BC027867 AB590100 AM392941 AM393275 EU832487 EU832567	101085	+	AK313496|CD84|8832|CD84 molecule##AF054815|CD84|8832|CD84 molecule##AF054816|CD84|8832|CD84 molecule##AF054817|CD84|8832|CD84 molecule##AF054818|CD84|8832|CD84 molecule##U96627|CD84|8832|CD84 molecule##Y12632|CD84|8832|CD84 molecule##NM_001184879|CD84|8832|CD84 molecule##NM_001184881|CD84|8832|CD84 molecule##NM_001184882|CD84|8832|CD84 molecule##NM_003874|CD84|8832|CD84 molecule##CR541847|CD84|8832|CD84 molecule##DQ891708|CD84|8832|CD84 molecule##DQ894872|CD84|8832|CD84 molecule##BC020063|CD84|8832|CD84 molecule##U82988|CD84|8832|CD84 molecule##AJ223324|CD84|8832|CD84 molecule##AK296290|CD84|8832|CD84 molecule##CR933666|CD84|8832|CD84 molecule##AJ306388|SLAMF6|114836|SLAM family member 6##AJ277141|SLAMF6|114836|SLAM family member 6##AK313549|SLAMF6|114836|SLAM family member 6##BC113893|SLAMF6|114836|SLAM family member 6##BC114495|SLAMF6|114836|SLAM family member 6##AK310085|SLAMF6|114836|SLAM family member 6##AL832854|SLAMF6|114836|SLAM family member 6##BC090928|SLAMF6|114836|SLAM family member 6##AK300013|SLAMF6|114836|SLAM family member 6##AK301026|SLAMF6|114836|SLAM family member 6##AY358159|SLAMF6|114836|SLAM family member 6##AK303990|SLAMF6|114836|SLAM family member 6##AK125624|SLAMF6|114836|SLAM family member 6##NM_001184714|SLAMF6|114836|SLAM family member 6##NM_001184715|SLAMF6|114836|SLAM family member 6##NM_001184716|SLAMF6|114836|SLAM family member 6##NM_052931|SLAMF6|114836|SLAM family member 6##AK314244|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_003037|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BC012602|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BT019813|CD48|962|CD48 molecule##CR457012|CD48|962|CD48 molecule##DQ896316|CD48|962|CD48 molecule##EU176422|CD48|962|CD48 molecule##M59904|CD48|962|CD48 molecule##M37766|CD48|962|CD48 molecule##BC016182|CD48|962|CD48 molecule##NM_001778|CD48|962|CD48 molecule##X06341|CD48|962|CD48 molecule##BC030224|CD48|962|CD48 molecule##AK225636|CD48|962|CD48 molecule##AK310624|CD48|962|CD48 molecule##AK310744|CD48|962|CD48 molecule##AK298548|SLAMF7|57823|SLAM family member 7##AK298499|SLAMF7|57823|SLAM family member 7##AY358512|SLAMF7|57823|SLAM family member 7##AL834424|SLAMF7|57823|SLAM family member 7##AK301438|SLAMF7|57823|SLAM family member 7##AK290706|SLAMF7|57823|SLAM family member 7##AK292097|SLAMF7|57823|SLAM family member 7##AK292148|SLAMF7|57823|SLAM family member 7##AK301137|SLAMF7|57823|SLAM family member 7##AK301432|SLAMF7|57823|SLAM family member 7##AF390894|SLAMF7|57823|SLAM family member 7##AB027233|SLAMF7|57823|SLAM family member 7##NM_021181|SLAMF7|57823|SLAM family member 7##AF291815|SLAMF7|57823|SLAM family member 7##AJ271869|SLAMF7|57823|SLAM family member 7##AJ276429|SLAMF7|57823|SLAM family member 7##BC027867|SLAMF7|57823|SLAM family member 7##AM392941|SLAMF7|57823|SLAM family member 7##AM393275|SLAMF7|57823|SLAM family member 7##EU832487|SLAMF7|57823|SLAM family member 7##EU832567|SLAMF7|57823|SLAM family member 7	0.336036	0.0	
chr1	205207276	205207456	reg1006540.p1	6.459	+	AK293734 NM_001242925	-9308	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-10283	+	TSC_hg19_v1_chr1_-_205180700 AY429674 BC060870 NM_015375 NM_199462	-26647	-	AY358192 TSC_hg19_v1_chr1_+_205236667	29268	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	83477	-	BC036076 TSC_hg19_v1_chr1_-_205313311	105944	-	AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AY429674|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC060870|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_015375|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_199462|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A	0.791692	0.0	denovo_WM_7:6:0.725
chr19	13068277	13068457	reg1003982.p2	6.459	+	TSC_hg19_v1_chr19_-_13068038 AF479749 NM_052850	-322	-	AJ295986 BC004944 BC013027 BC013039 AF412816 AF475095 AJ429498 CU686712 BC069200 TSC_hg19_v1_chr19_-_13068030	-348	-	TSC_hg19_v1_chr19_+_13056675 AK289908 BC088364 BC014026 AB209713 D21235 AB463210 L37720	-11636	+	AK095926 NM_152654 BC101800 BC113476 AB070695 HQ258091	12085	+	TSC_hg19_v1_chr19_+_13106288 BC052801 NM_002501 AB385580 BT019732	38035	+	TSC_hg19_v1_chr19_+_13134807 AK297261 U18759	66437	+	AF479749|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##NM_052850|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AJ295986|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC004944|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC013027|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC013039|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AF412816|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AF475095|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AJ429498|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC069200|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AK289908|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC088364|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC014026|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AB209713|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##D21235|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AK095926|DAND5|199699|DAN domain family, member 5##NM_152654|DAND5|199699|DAN domain family, member 5##BC101800|DAND5|199699|DAN domain family, member 5##BC113476|DAND5|199699|DAN domain family, member 5##AB070695|DAND5|199699|DAN domain family, member 5##HQ258091|DAND5|199699|DAN domain family, member 5##NM_002501|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BT019732|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK297261|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##U18759|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)	0.991614	0.0	denovo_WM_7:20:0.233	denovo_WM_7:21:0.233	denovo_WM_7:22:0.233	denovo_WM_7:23:0.233
chr3	183903682	183903862	reg1005991.p2	6.459	+	U36188 TSC_hg19_v1_chr3_+_183894817 AB385280 CU678848 CU680684 DQ892876 DQ895915 BT007308	-8986	+	TSC_hg19_v1_chr3_+_183892700 D63475 BC013796	-11044	+	TSC_hg19_v1_chr3_+_183892692 AK297578	-11081	+	NM_018358 AK002060 AK092415 TSC_hg19_v1_chr3_+_183903963 AK097073	142	+	TSC_hg19_v1_chr3_+_183903978 AK299433 AK299256 BC009253 AK027288 BC035652 BC051754 BC051884 AK290106 CU679275 CU690830	209	+	BC136609 NM_138345	44494	+	U36188|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##DQ892876|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##DQ895915|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##BT007308|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##D63475|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##BC013796|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##AK297578|AP2M1|1173|adaptor-related protein complex 2, mu 1 subunit##NM_018358|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK002060|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK092415|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK097073|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK299433|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK299256|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##BC009253|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK027288|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##BC035652|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##BC051754|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##BC051884|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##AK290106|ABCF3|55324|ATP-binding cassette, sub-family F (GCN20), member 3##BC136609|VWA5B2|90113|von Willebrand factor A domain containing 5B2##NM_138345|VWA5B2|90113|von Willebrand factor A domain containing 5B2	0.0	0.0	
chr7	35683417	35683597	reg1006934.p1	6.459	+	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	-389777	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	-457715	-	DQ287932 NM_015283	-605855	-	TSC_hg19_v1_chr7_-_35734533 BC005091	51089	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	51232	-	TSC_hg19_v1_chr7_-_35734795 NM_022373	51271	-	NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC005091|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##NM_022373|HERPUD2|64224|HERPUD family member 2	1.40796	0.0	denovo_WM_7:-54:0.314	denovo_WM_7:-55:0.350	denovo_WM_7:-77:0.283
chr16	71934165	71934345	reg1006423.p2	6.458	+	TSC_hg19_v1_chr16_+_71929438 AK295066 AK301918 AK057902 AK293022 AK297088 AB097052 D79996 BC000430 BC004359 NM_014761 BC000116	-4812	+	TSC_hg19_v1_chr16_+_71929421 AK291388 AK297336 BC103745	-4841	+	TSC_hg19_v1_chr16_-_71918084 BC012116 AK313693 BC004563 NM_001201552 NM_001201554 NM_001201556	-16211	-	AY164485 NM_181536	99621	-	AK292293 TSC_hg19_v1_chr16_+_72042642 NM_001361 BC065245	108339	+	NM_001126102 NM_005143 AK314700 BC107587 AK055872 BC017862 BC058031 BC070299 K01763 L29394 BC121124 BC121125 X00637 K00422	154268	+	AK295066|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK301918|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK057902|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK293022|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297088|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AB097052|IST1|9798|increased sodium tolerance 1 homolog (yeast)##D79996|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000430|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC004359|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_014761|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000116|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK291388|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297336|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC103745|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC012116|ZNF821|55565|zinc finger protein 821##AK313693|ZNF821|55565|zinc finger protein 821##BC004563|ZNF821|55565|zinc finger protein 821##NM_001201552|ZNF821|55565|zinc finger protein 821##NM_001201554|ZNF821|55565|zinc finger protein 821##NM_001201556|ZNF821|55565|zinc finger protein 821##AY164485|PKD1L3|342372|polycystic kidney disease 1-like 3##NM_181536|PKD1L3|342372|polycystic kidney disease 1-like 3##AK292293|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001361|DHODH|1723|dihydroorotate dehydrogenase (quinone)##BC065245|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001126102|HP|3240|haptoglobin##NM_005143|HP|3240|haptoglobin##AK314700|HP|3240|haptoglobin##BC107587|HP|3240|haptoglobin##AK055872|HP|3240|haptoglobin##BC017862|HP|3240|haptoglobin##BC058031|HP|3240|haptoglobin##BC070299|HP|3240|haptoglobin##K01763|HP|3240|haptoglobin##L29394|HP|3240|haptoglobin##BC121124|HP|3240|haptoglobin##BC121125|HP|3240|haptoglobin##X00637|HP|3240|haptoglobin##K00422|HP|3240|haptoglobin	0.995795	0.0	
chr11	67211736	67211850	reg1002591.p3	6.457	+	NM_001018070	-502	-	TSC_hg19_v1_chr11_-_67210953 AB209579 AK309267 AK000860 NM_020441	-826	-	TSC_hg19_v1_chr11_-_67210939 BC006449 AK315399 AK295782	-864	-	AY569571 BC119779 BC122869 NM_206997	8406	-	AY039217 NM_145200	11024	+	AK310743 TSC_hg19_v1_chr11_-_67236717 AK296988 AY007143 BC013883 BC051854 BC125134 AK303342 NM_001078650 NM_001078651 NM_025124 AK025402	24908	-	NM_001018070|CORO1B|57175|coronin, actin binding protein, 1B##AK309267|CORO1B|57175|coronin, actin binding protein, 1B##AK000860|CORO1B|57175|coronin, actin binding protein, 1B##NM_020441|CORO1B|57175|coronin, actin binding protein, 1B##BC006449|CORO1B|57175|coronin, actin binding protein, 1B##AK315399|CORO1B|57175|coronin, actin binding protein, 1B##AK295782|CORO1B|57175|coronin, actin binding protein, 1B##AY569571|GPR152|390212|G protein-coupled receptor 152##BC119779|GPR152|390212|G protein-coupled receptor 152##BC122869|GPR152|390212|G protein-coupled receptor 152##NM_206997|GPR152|390212|G protein-coupled receptor 152##AY039217|CABP4|57010|calcium binding protein 4##NM_145200|CABP4|57010|calcium binding protein 4##AK310743|TMEM134|80194|transmembrane protein 134##AK296988|TMEM134|80194|transmembrane protein 134##AY007143|TMEM134|80194|transmembrane protein 134##BC013883|TMEM134|80194|transmembrane protein 134##BC051854|TMEM134|80194|transmembrane protein 134##BC125134|TMEM134|80194|transmembrane protein 134##AK303342|TMEM134|80194|transmembrane protein 134##NM_001078650|TMEM134|80194|transmembrane protein 134##NM_001078651|TMEM134|80194|transmembrane protein 134##NM_025124|TMEM134|80194|transmembrane protein 134##AK025402|TMEM134|80194|transmembrane protein 134	1.010431	0.0	denovo_WM_7:-4:0.332	denovo_WM_7:-5:0.332	denovo_WM_7:-6:0.332
chr10	102694205	102694298	reg1005290.p2	6.456	+	TSC_hg19_v1_chr10_+_102672719 AK292565 AL832343 AL833126 BC015131 BC047715 BC030565 BC064526 BC020915 BC073832 AL832383 AB385255	-21476	+	AF460991 AF460992 NM_001136123 NM_001243770 NM_018121	-21926	+	TSC_hg19_v1_chr10_+_102505338 L25597 M89470 NM_000278 NM_003987 NM_003988 NM_003989 NM_003990	-188849	+	TSC_hg19_v1_chr10_+_102729286 BC051030 AK297431	35025	+	NM_001203244 NM_017893	38034	+	AF086122 TSC_hg19_v1_chr10_-_102747046 BC031287	52791	-	AK292565|FAM178A|55719|family with sequence similarity 178, member A##AL832343|FAM178A|55719|family with sequence similarity 178, member A##AL833126|FAM178A|55719|family with sequence similarity 178, member A##BC015131|FAM178A|55719|family with sequence similarity 178, member A##BC047715|FAM178A|55719|family with sequence similarity 178, member A##BC030565|FAM178A|55719|family with sequence similarity 178, member A##BC064526|FAM178A|55719|family with sequence similarity 178, member A##BC020915|FAM178A|55719|family with sequence similarity 178, member A##BC073832|FAM178A|55719|family with sequence similarity 178, member A##AL832383|FAM178A|55719|family with sequence similarity 178, member A##AF460991|FAM178A|55719|family with sequence similarity 178, member A##AF460992|FAM178A|55719|family with sequence similarity 178, member A##NM_001136123|FAM178A|55719|family with sequence similarity 178, member A##NM_001243770|FAM178A|55719|family with sequence similarity 178, member A##NM_018121|FAM178A|55719|family with sequence similarity 178, member A##L25597|PAX2|5076|paired box 2##M89470|PAX2|5076|paired box 2##NM_000278|PAX2|5076|paired box 2##NM_003987|PAX2|5076|paired box 2##NM_003988|PAX2|5076|paired box 2##NM_003989|PAX2|5076|paired box 2##NM_003990|PAX2|5076|paired box 2##BC051030|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##AK297431|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##NM_001203244|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##NM_017893|SEMA4G|57715|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G##AF086122|MRPL43|84545|mitochondrial ribosomal protein L43##BC031287|MRPL43|84545|mitochondrial ribosomal protein L43	0.310908	0.685985	CTCF.p2:-29:0.686
chr1	168379796	168379910	reg1005276.p1	6.454	+	AJ010277 NM_005149 BC093664 BC093666 EU446671	-129551	+	TSC_hg19_v1_chr1_+_168195262 BC068098 CU686619	-184560	+	TSC_hg19_v1_chr1_+_168195254 AK290325 NM_199344	-184602	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	133364	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	165939	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	318576	-	AJ010277|TBX19|9095|T-box 19##NM_005149|TBX19|9095|T-box 19##BC093664|TBX19|9095|T-box 19##BC093666|TBX19|9095|T-box 19##EU446671|TBX19|9095|T-box 19##BC068098|SFT2D2|375035|SFT2 domain containing 2##AK290325|SFT2D2|375035|SFT2 domain containing 2##NM_199344|SFT2D2|375035|SFT2 domain containing 2##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin	0.0	0.0	
chr16	11171800	11171936	reg1007323.p1	6.454	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-133425	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-135633	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-135702	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	178182	-	X63758 BC096135 BC096136 BC096137 NM_005425	191270	-	NM_021247	195583	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.0	0.0	
chr2	111433077	111433257	reg1006418.p2	6.454	+	AL136868 NM_001037866 NM_001123363 NM_032260	-96859	-	NM_005054 U64675	-98490	-	BC094740 NM_001205288 NM_033514	-202516	-	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	2476	-	TSC_hg19_v1_chr2_+_111435820 BC040607	2655	+	AK300513 NM_001142807 BC022268	57012	+	AL136868|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001037866|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_001123363|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_032260|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##BC094740|LIMS3-LOC440895|100271835|LIMS3-LOC440895 readthrough##NM_001205288|LIMS3L|100288695|LIM and senescent cell antigen-like domains 3-like##NM_033514|LIMS3|96626|LIM and senescent cell antigen-like domains 3##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like	1.880428	0.0	denovo_WM_7:24:0.885	denovo_WM_7:72:0.601
chr5	112262875	112263055	reg1006801.p1	6.454	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	-4978	-	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	-65941	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	-66036	+	TSC_hg19_v1_chr5_+_112312407 NM_001242377 NM_152624	49440	+	TSC_hg19_v1_chr5_+_112312506 AY135173 AY146650 BC017965 AK296361 AK090564 AX746512 BC064593 BC068042 CU687920	49563	+	M62397 AK096212 TSC_hg19_v1_chr5_-_112630346	367360	-	AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##NM_001242377|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##NM_152624|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY135173|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY146650|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC017965|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK296361|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK090564|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC064593|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC068042|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##M62397|MCC|4163|mutated in colorectal cancers##AK096212|MCC|4163|mutated in colorectal cancers	2.605013	0.0	denovo_WM_7:-9:0.767	denovo_WM_7:20:0.535	denovo_WM_7:35:0.524
chr1	208412469	208412577	reg1005203.p1	6.453	+	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	-327966	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	-328140	-	BX640941 TSC_hg19_v1_chr1_-_208059392	-353200	-	TSC_hg19_v1_chr1_-_208417635 NM_025179	5126	-	AK091113 AX746785 NM_001104548	1189642	+	NM_020439 AK095713 AK289675 AF428261 BC032787	1344537	+	BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##NM_025179|PLXNA2|5362|plexin A2##NM_001104548|MIR205HG|642587|MIR205 host gene (non-protein coding)##NM_020439|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK095713|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK289675|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AF428261|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##BC032787|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG	1.029893	0.543596	denovo_WM_7:-15:0.542	denovo_WM_7:-16:0.456	CTCF.p2:39:0.544
chr1	224192234	224192347	reg1001696.p1	6.452	+	NM_001031685 NM_005426 TSC_hg19_v1_chr1_-_224033682	-158596	-	TSC_hg19_v1_chr1_-_224033620 BC046150 AJ318888 U58334 BC058918	-158667	-	AB384887 TSC_hg19_v1_chr1_-_224033497 AK294432	-158827	-	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	109520	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	178632	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	178697	+	NM_001031685|TP53BP2|7159|tumor protein p53 binding protein, 2##NM_005426|TP53BP2|7159|tumor protein p53 binding protein, 2##BC046150|TP53BP2|7159|tumor protein p53 binding protein, 2##AJ318888|TP53BP2|7159|tumor protein p53 binding protein, 2##U58334|TP53BP2|7159|tumor protein p53 binding protein, 2##BC058918|TP53BP2|7159|tumor protein p53 binding protein, 2##AK294432|TP53BP2|7159|tumor protein p53 binding protein, 2##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1	1.752814	0.0	denovo_WM_7:-49:0.423
chr1	1624522	1624702	reg1000814.p2	6.451	+	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-395	-	BC092507 TSC_hg19_v1_chr1_-_1624149 AK125619	-454	-	TSC_hg19_v1_chr1_-_1623947 CR936618 BC062371	-647	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	31164	-	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	52849	-	AK296722 NM_001198995	65468	-	AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##BC092507|SLC35E2B|728661|solute carrier family 35, member E2B##AK125619|SLC35E2B|728661|solute carrier family 35, member E2B##CR936618|SLC35E2B|728661|solute carrier family 35, member E2B##BC062371|SLC35E2|9906|solute carrier family 35, member E2##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase	0.0	0.0	
chr14	71635892	71635974	reg1012828.p2	6.451	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-261482	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-261800	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-360124	-	AF090989 AF090990 NM_015556	360108	+	AK294895 NM_001204423	762883	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	763220	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.997985	0.0	denovo_WM_7:60:0.998
chr1	52834089	52834201	reg1005786.p2	6.451	+	TSC_hg19_v1_chr1_-_52831829 BC039308 AK130874 NM_032449	-2299	-	AF130419 AF130420 NM_004799 NM_007323 NM_007324	-226100	+	AK027582 TSC_hg19_v1_chr1_+_52521975 BC022371 BC021004	-312147	+	BC011539 AK303420 U43416 AK291909 U40152 TSC_hg19_v1_chr1_-_52870133 NM_001190818 NM_001190819 NM_004153	35955	-	TSC_hg19_v1_chr1_+_52870235 NM_032864 AK092038 AK315621 AX747327	36079	+	TSC_hg19_v1_chr1_+_52870238 BC063655	36095	+	BC039308|CC2D1B|200014|coiled-coil and C2 domain containing 1B##AK130874|CC2D1B|200014|coiled-coil and C2 domain containing 1B##NM_032449|CC2D1B|200014|coiled-coil and C2 domain containing 1B##AF130419|ZFYVE9|9372|zinc finger, FYVE domain containing 9##AF130420|ZFYVE9|9372|zinc finger, FYVE domain containing 9##NM_004799|ZFYVE9|9372|zinc finger, FYVE domain containing 9##NM_007323|ZFYVE9|9372|zinc finger, FYVE domain containing 9##NM_007324|ZFYVE9|9372|zinc finger, FYVE domain containing 9##AK027582|BTF3L4|91408|basic transcription factor 3-like 4##BC022371|BTF3L4|91408|basic transcription factor 3-like 4##BC021004|BTF3L4|91408|basic transcription factor 3-like 4##BC011539|ORC1|4998|origin recognition complex, subunit 1##AK303420|ORC1|4998|origin recognition complex, subunit 1##U43416|ORC1|4998|origin recognition complex, subunit 1##AK291909|ORC1|4998|origin recognition complex, subunit 1##U40152|ORC1|4998|origin recognition complex, subunit 1##NM_001190818|ORC1|4998|origin recognition complex, subunit 1##NM_001190819|ORC1|4998|origin recognition complex, subunit 1##NM_004153|ORC1|4998|origin recognition complex, subunit 1##NM_032864|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##AK092038|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##AK315621|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##BC063655|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	0.26204	0.0	
chr17	2256994	2257121	reg1006246.p1	6.451	+	TSC_hg19_v1_chr17_+_2240796 NM_014853 AB007857 NM_001098509 BC039204 AK294955 AB275762 AB385325 AB449878 AK304263	-16155	+	NM_018128 AB037822	-16319	-	AB463326 TSC_hg19_v1_chr17_-_2239749 AK026565	-17313	-	X96401 NM_020310 TSC_hg19_v1_chr17_-_2304355 AK291596	47259	-	TSC_hg19_v1_chr17_-_2415189 BX647255 AK294547 BC050603 BC001213 AL832612 AK027410 AK296464 NM_024086	158088	-	TSC_hg19_v1_chr17_+_2496944 NM_000430 L13386	239913	+	NM_014853|SGSM2|9905|small G protein signaling modulator 2##AB007857|SGSM2|9905|small G protein signaling modulator 2##NM_001098509|SGSM2|9905|small G protein signaling modulator 2##BC039204|SGSM2|9905|small G protein signaling modulator 2##AK294955|SGSM2|9905|small G protein signaling modulator 2##AB275762|SGSM2|9905|small G protein signaling modulator 2##AB449878|SGSM2|9905|small G protein signaling modulator 2##AK304263|SGSM2|9905|small G protein signaling modulator 2##NM_018128|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##AB037822|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##AK026565|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##X96401|MNT|4335|MAX binding protein##NM_020310|MNT|4335|MAX binding protein##AK291596|MNT|4335|MAX binding protein##BX647255|METTL16|79066|methyltransferase like 16##AK294547|METTL16|79066|methyltransferase like 16##BC050603|METTL16|79066|methyltransferase like 16##BC001213|METTL16|79066|methyltransferase like 16##AL832612|METTL16|79066|methyltransferase like 16##AK027410|METTL16|79066|methyltransferase like 16##AK296464|METTL16|79066|methyltransferase like 16##NM_024086|METTL16|79066|methyltransferase like 16##NM_000430|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13386|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.0	0.0	
chr3	111834353	111834482	reg1006544.p2	6.451	+	TSC_hg19_v1_chr3_+_111805267 AK303588 NM_001171747 NM_024616 AY830714 AK026839 BC017064 AK298076	-29189	+	AK131211 NM_001042575 BC117322	-75909	+	NM_001008273 BC004477 TSC_hg19_v1_chr3_+_111718179 AF112201 BT007408 CU677265	-116280	+	CU688884 BC030506 AY212246 AK313368 AK128276 AF521911 NM_001190259 NM_001190260 NM_152785	17642	-	BC044801 NM_183061 AK128084	178671	-	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	217541	+	AK303588|C3orf52|79669|chromosome 3 open reading frame 52##NM_001171747|C3orf52|79669|chromosome 3 open reading frame 52##NM_024616|C3orf52|79669|chromosome 3 open reading frame 52##AY830714|C3orf52|79669|chromosome 3 open reading frame 52##AK026839|C3orf52|79669|chromosome 3 open reading frame 52##BC017064|C3orf52|79669|chromosome 3 open reading frame 52##AK298076|C3orf52|79669|chromosome 3 open reading frame 52##AK131211|TMPRSS7|344805|transmembrane protease, serine 7##NM_001042575|TMPRSS7|344805|transmembrane protease, serine 7##BC117322|TMPRSS7|344805|transmembrane protease, serine 7##NM_001008273|TAGLN3|29114|transgelin 3##AF112201|TAGLN3|29114|transgelin 3##BT007408|TAGLN3|29114|transgelin 3##BC030506|GCET2|257144|germinal center expressed transcript 2##AY212246|GCET2|257144|germinal center expressed transcript 2##AK313368|GCET2|257144|germinal center expressed transcript 2##AF521911|GCET2|257144|germinal center expressed transcript 2##NM_001190259|GCET2|257144|germinal center expressed transcript 2##NM_001190260|GCET2|257144|germinal center expressed transcript 2##NM_152785|GCET2|257144|germinal center expressed transcript 2##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule	0.0	0.0	
chr5	114910302	114910417	reg1004693.p1	6.451	+	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	-29796	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	-30002	-	AB587510 AJ580807 NM_001040440	-278011	-	BC109265 BC109266 NM_021649	27758	-	TSC_hg19_v1_chr5_-_114961697 AK074962	51333	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	51435	-	BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##AJ580807|CCDC112|153733|coiled-coil domain containing 112##NM_001040440|CCDC112|153733|coiled-coil domain containing 112##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7	1.239629	0.027922	
chr12	123419318	123419447	reg1005855.p2	6.450	+	TSC_hg19_v1_chr12_-_123380691 AK022812 NM_024667	-38686	-	TSC_hg19_v1_chr12_-_123380645 BC005882	-38743	-	CU675175 TSC_hg19_v1_chr12_-_123380621	-38767	-	TSC_hg19_v1_chr12_-_123450999 AK027624 AB177852 AB112582 AB112583	31596	-	AF216494 AK304295 TSC_hg19_v1_chr12_-_123451051 NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444	31665	-	BC009181 BC071172 BC015605 BC047676 AK095481 AK023553 NM_024623 BC033857	39924	+	AK022812|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##NM_024667|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##BC005882|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##AK027624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB177852|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112582|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112583|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AF216494|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK304295|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243013|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243014|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019625|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_203444|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##BC009181|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC071172|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC015605|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC047676|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK095481|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK023553|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##NM_024623|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC033857|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2	0.034791	0.0	
chr15	42763921	42764037	reg1006780.p1	6.450	+	AL831983 BC029366 BC070244 AF205632 BC058023 BC111396 NM_022473 TSC_hg19_v1_chr15_-_42749731 AK294529 AK091929 AX747260	-14242	-	BC107791 BC004883 NM_173089 NM_173090 BC067126 BC003521 BC100782 BC100783 BC100784 BC128605 BC007810	-66987	+	BC003169 NM_173088	-69392	+	TSC_hg19_v1_chr15_-_42783322 AK226132 BX649141 AK302735	19345	-	AK290152 AK315279 NM_003825 NM_130798	23501	+	U55936 TSC_hg19_v1_chr15_+_42787875 BC022890 BC003686 AK313161 BC000148 AJ011915	23888	+	AL831983|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC029366|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC070244|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AF205632|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC058023|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC111396|ZFP106|64397|zinc finger protein 106 homolog (mouse)##NM_022473|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK294529|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK091929|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC107791|CAPN3|825|calpain 3, (p94)##BC004883|CAPN3|825|calpain 3, (p94)##NM_173089|CAPN3|825|calpain 3, (p94)##NM_173090|CAPN3|825|calpain 3, (p94)##BC067126|CAPN3|825|calpain 3, (p94)##BC003521|CAPN3|825|calpain 3, (p94)##BC100782|CAPN3|825|calpain 3, (p94)##BC100783|CAPN3|825|calpain 3, (p94)##BC100784|CAPN3|825|calpain 3, (p94)##BC128605|CAPN3|825|calpain 3, (p94)##BC007810|CAPN3|825|calpain 3, (p94)##BC003169|CAPN3|825|calpain 3, (p94)##NM_173088|CAPN3|825|calpain 3, (p94)##AK226132|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK302735|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK290152|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK315279|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_003825|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_130798|SNAP23|8773|synaptosomal-associated protein, 23kDa##U55936|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC022890|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC003686|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK313161|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC000148|SNAP23|8773|synaptosomal-associated protein, 23kDa##AJ011915|SNAP23|8773|synaptosomal-associated protein, 23kDa	0.0	0.125561	
chr1	9620268	9620403	reg1007019.p1	6.450	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-20699	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	-20803	+	TSC_hg19_v1_chr1_+_9415945 CU677397	-204389	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	28621	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	91469	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	263560	-	BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1	1.710855	0.0	denovo_WM_7:-2:0.603	denovo_WM_7:-17:0.916
chr7	126336993	126337173	reg1005894.p1	6.450	+	NM_001042594 NM_015450	-1767047	-	BC130600 BC130604 NM_001024603	-1906281	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1931287	-	NM_000845	546485	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	555282	-	TSC_hg19_v1_chr7_-_126893165 AK290197	556069	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.992566	0.0	denovo_WM_7:22:0.956
chr16	51611805	51611941	reg1005722.p1	6.449	+	BC113881 BC113906 BC131548 Y18265 TSC_hg19_v1_chr16_-_51185251 AK295103 NM_002968	-426461	-	AK307835 NM_001127892	-427366	-	TSC_hg19_v1_chr16_+_50776066 AF161542 NM_001042412 BC012342	-835815	+	NM_001242473	495973	-	NM_001080430	968932	-	AK299202 NM_001146188	969840	-	BC113881|SALL1|6299|sal-like 1 (Drosophila)##BC113906|SALL1|6299|sal-like 1 (Drosophila)##BC131548|SALL1|6299|sal-like 1 (Drosophila)##Y18265|SALL1|6299|sal-like 1 (Drosophila)##AK295103|SALL1|6299|sal-like 1 (Drosophila)##NM_002968|SALL1|6299|sal-like 1 (Drosophila)##AK307835|SALL1|6299|sal-like 1 (Drosophila)##NM_001127892|SALL1|6299|sal-like 1 (Drosophila)##AF161542|CYLD|1540|cylindromatosis (turban tumor syndrome)##NM_001042412|CYLD|1540|cylindromatosis (turban tumor syndrome)##BC012342|CYLD|1540|cylindromatosis (turban tumor syndrome)##NM_001242473|LOC388276|388276|hCG2045437##NM_001080430|TOX3|27324|TOX high mobility group box family member 3##AK299202|TOX3|27324|TOX high mobility group box family member 3##NM_001146188|TOX3|27324|TOX high mobility group box family member 3	0.215109	0.0	
chr2	169051420	169051563	reg1006349.p1	6.449	+	NM_020981	-376310	+	EF119711 EF119717 NM_001199144 NM_001199145	-1007699	+	EF119718 EF119719 EF119720 EF119721 EF119722 NM_001079810 NM_001199143 NM_152381 AK097519	-1306495	+	TSC_hg19_v1_chr2_-_169104075 BC146813 AY629298 AF099989 NM_013233 AF030403	52582	-	TSC_hg19_v1_chr2_+_169312764 AK172775	261268	+	TSC_hg19_v1_chr2_+_169312801 NM_203463 BC109284 BC109285 AB527953	261384	+	NM_020981|B3GALT1|8708|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1##EF119711|XIRP2|129446|xin actin-binding repeat containing 2##EF119717|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199144|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199145|XIRP2|129446|xin actin-binding repeat containing 2##EF119718|XIRP2|129446|xin actin-binding repeat containing 2##EF119719|XIRP2|129446|xin actin-binding repeat containing 2##EF119720|XIRP2|129446|xin actin-binding repeat containing 2##EF119721|XIRP2|129446|xin actin-binding repeat containing 2##EF119722|XIRP2|129446|xin actin-binding repeat containing 2##NM_001079810|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199143|XIRP2|129446|xin actin-binding repeat containing 2##NM_152381|XIRP2|129446|xin actin-binding repeat containing 2##AK097519|XIRP2|129446|xin actin-binding repeat containing 2##BC146813|STK39|27347|serine threonine kinase 39##AF099989|STK39|27347|serine threonine kinase 39##NM_013233|STK39|27347|serine threonine kinase 39##AF030403|STK39|27347|serine threonine kinase 39##AK172775|CERS6|253782|ceramide synthase 6##NM_203463|CERS6|253782|ceramide synthase 6##BC109284|CERS6|253782|ceramide synthase 6##BC109285|CERS6|253782|ceramide synthase 6	0.012793	0.0	
chr6	34642685	34642851	reg1005147.p2	6.448	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-118672	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-160114	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-208864	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	21778	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	21858	-	NM_003093	82102	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.0	0.0	
chr1	36698367	36698498	reg1005564.p1	6.447	+	TSC_hg19_v1_chr1_+_36690047 BC065519 BC010997 AF117756 BC002501 BC019076 BC112330 BC112350	-8370	+	TSC_hg19_v1_chr1_+_36690029 NM_005119	-8418	+	TSC_hg19_v1_chr1_+_36636693 AF218002 BC111428	-61656	+	EU446755 TSC_hg19_v1_chr1_+_36748231	49768	+	TSC_hg19_v1_chr1_+_36771968 NM_001162530	73545	+	TSC_hg19_v1_chr1_+_36772696 NM_024676 AK297015 AK056459	74274	+	BC065519|THRAP3|9967|thyroid hormone receptor associated protein 3##BC010997|THRAP3|9967|thyroid hormone receptor associated protein 3##AF117756|THRAP3|9967|thyroid hormone receptor associated protein 3##BC002501|THRAP3|9967|thyroid hormone receptor associated protein 3##BC019076|THRAP3|9967|thyroid hormone receptor associated protein 3##BC112330|THRAP3|9967|thyroid hormone receptor associated protein 3##BC112350|THRAP3|9967|thyroid hormone receptor associated protein 3##NM_005119|THRAP3|9967|thyroid hormone receptor associated protein 3##AF218002|MAP7D1|55700|MAP7 domain containing 1##BC111428|MAP7D1|55700|MAP7 domain containing 1##EU446755|THRAP3|9967|thyroid hormone receptor associated protein 3##NM_001162530|SH3D21|79729|SH3 domain containing 21##NM_024676|SH3D21|79729|SH3 domain containing 21##AK297015|SH3D21|79729|SH3 domain containing 21##AK056459|SH3D21|79729|SH3 domain containing 21	0.997634	0.0	denovo_WM_7:55:0.817
chr17	8088913	8089035	reg1006825.p2	6.447	+	CU687070 BC006292 TSC_hg19_v1_chr17_-_8079699 AK127891 AK315666 AK027813 BC119730 BC119731 BC127649 BC127650 AY358525 BC070231 NM_032354 NM_183065	-9314	-	TSC_hg19_v1_chr17_-_8066267 BC002737 AK289555 BC019608 BC033870 AK225777 NM_014232	-22682	-	AL050223 TSC_hg19_v1_chr17_-_8064059	-24972	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	4430	-	TSC_hg19_v1_chr17_-_8093499 NM_017622	4553	-	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	24909	-	BC006292|TMEM107|84314|transmembrane protein 107##AK315666|TMEM107|84314|transmembrane protein 107##AK027813|TMEM107|84314|transmembrane protein 107##BC119730|TMEM107|84314|transmembrane protein 107##BC119731|TMEM107|84314|transmembrane protein 107##BC127649|TMEM107|84314|transmembrane protein 107##BC127650|TMEM107|84314|transmembrane protein 107##AY358525|TMEM107|84314|transmembrane protein 107##BC070231|TMEM107|84314|transmembrane protein 107##NM_032354|TMEM107|84314|transmembrane protein 107##NM_183065|TMEM107|84314|transmembrane protein 107##BC002737|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK289555|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC019608|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC033870|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK225777|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##NM_014232|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AL050223|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B	1.96961	0.0	denovo_WM_7:-76:0.246	denovo_WM_7:-77:0.663	denovo_WM_7:-92:0.812
chr6	105237880	105238036	reg1006598.p1	6.447	+	NM_001166247 NM_021956 NM_175768 AK291965 AK289542 BC063814	-3391053	+	BC037954 TSC_hg19_v1_chr6_+_101846686	-3391281	+	HM149340 TSC_hg19_v1_chr6_+_101841583	-3396452	+	TSC_hg19_v1_chr6_-_105307736 AK291760	69767	-	TSC_hg19_v1_chr6_-_105307774 BC038119 BC034982	69804	-	TSC_hg19_v1_chr6_-_105307783 AK131207 NM_020771	69830	-	NM_001166247|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##NM_021956|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##NM_175768|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK291965|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK289542|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##BC063814|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##BC037954|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK291760|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##BC038119|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##BC034982|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##AK131207|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##NM_020771|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	0.993071	0.81135	denovo_WM_7:-4:0.393	denovo_WM_7:-9:0.525	CTCF.p2:-28:0.811
chr10	1776394	1776523	reg1004571.p1	6.446	+	TSC_hg19_v1_chr10_+_1102822 AK292591	-673632	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-673689	+	BC057827 TSC_hg19_v1_chr10_-_1102645	-673806	-	AF034837 NM_018702	3211	-	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	1333289	+	AK092597 AX747622 NM_001242339	1334360	+	AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC057827|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet	0.995538	0.0	
chr7	99648821	99648936	reg1008071.p1	6.446	+	NM_145914 TSC_hg19_v1_chr7_+_99647416 CR749301 BC047309 AK301871	-1448	+	AK075324 TSC_hg19_v1_chr7_+_99647394 AK292267 AK313884	-1480	+	TSC_hg19_v1_chr7_+_99627917 U09848	-20940	+	TSC_hg19_v1_chr7_-_99679347 BC011887 BC025265 BC013603 AK297625 AF193057 AF217988 AK315479 AK091984 AX747291 NM_017715 NM_032924	30449	-	BC041695 TSC_hg19_v1_chr7_-_99680201	31309	-	AK309719 TSC_hg19_v1_chr7_-_99680369	31490	-	NM_145914|ZSCAN21|7589|zinc finger and SCAN domain containing 21##CR749301|ZSCAN21|7589|zinc finger and SCAN domain containing 21##BC047309|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK301871|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK075324|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK292267|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK313884|ZSCAN21|7589|zinc finger and SCAN domain containing 21##U09848|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC011887|ZNF3|7551|zinc finger protein 3##BC025265|ZNF3|7551|zinc finger protein 3##BC013603|ZNF3|7551|zinc finger protein 3##AK297625|ZNF3|7551|zinc finger protein 3##AF193057|ZNF3|7551|zinc finger protein 3##AF217988|ZNF3|7551|zinc finger protein 3##AK315479|ZNF3|7551|zinc finger protein 3##AK091984|ZNF3|7551|zinc finger protein 3##NM_017715|ZNF3|7551|zinc finger protein 3##NM_032924|ZNF3|7551|zinc finger protein 3##AK309719|ZNF3|7551|zinc finger protein 3	3.132515	0.0	denovo_WM_7:30:0.494	denovo_WM_7:34:0.341	denovo_WM_7:49:0.512	denovo_WM_7:-68:0.203
chr2	43003058	43003238	reg1003109.p3	6.445	+	AY158687 AB528920 AB083055 BC063549 NM_148962	-11848	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-207251	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-207427	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	16603	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	450197	-	TSC_hg19_v1_chr2_-_43453736 BC020369	450582	-	AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.0	0.0	
chr7	28725218	28725387	reg1005935.p1	6.445	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-194537	+	L05911 NM_004904	-250069	+	L05515 NM_182898	-273159	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	381	+	CU690330 TSC_hg19_v1_chr7_-_28997732	272395	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	272627	-	AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats	1.933116	0.0	denovo_WM_7:-8:0.228	denovo_WM_7:-9:0.228	denovo_WM_7:-10:0.228	denovo_WM_7:-11:0.228	denovo_WM_7:13:0.442	denovo_WM_7:14:0.485
chr9	34097956	34098063	reg1004811.p2	6.445	+	TSC_hg19_v1_chr9_-_34048895 BC111409 AK302335 NM_018449	-49093	-	AB209911 TSC_hg19_v1_chr9_-_34048886 AK302754 AK294952 AK299183 AK303493 CR933678	-49132	-	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	-280337	+	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	28577	-	BC063823 TSC_hg19_v1_chr9_-_34126702 AB067479 DQ518909	28686	-	TSC_hg19_v1_chr9_-_34126703 NM_015397	28727	-	BC111409|UBAP2|55833|ubiquitin associated protein 2##AK302335|UBAP2|55833|ubiquitin associated protein 2##NM_018449|UBAP2|55833|ubiquitin associated protein 2##AB209911|UBAP2|55833|ubiquitin associated protein 2##AK302754|UBAP2|55833|ubiquitin associated protein 2##AK294952|UBAP2|55833|ubiquitin associated protein 2##AK299183|UBAP2|55833|ubiquitin associated protein 2##AK303493|UBAP2|55833|ubiquitin associated protein 2##CR933678|UBAP2|55833|ubiquitin associated protein 2##AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12##BC063823|DCAF12|25853|DDB1 and CUL4 associated factor 12##AB067479|DCAF12|25853|DDB1 and CUL4 associated factor 12##DQ518909|DCAF12|25853|DDB1 and CUL4 associated factor 12##NM_015397|DCAF12|25853|DDB1 and CUL4 associated factor 12	0.99212	0.0	
chr22	20098832	20098956	reg1006102.p2	6.444	+	TSC_hg19_v1_chr22_+_20067801 NM_001190326 NM_022720 AK313357 BC037564 BC009984	-31112	+	AK297922 AK298593 TSC_hg19_v1_chr22_+_20008634 AK297075 AK316020 AK092484 AX747566 CR627452	-90251	+	TSC_hg19_v1_chr22_+_20008632 AK316056 BC041339 NM_152906 AK301054 AK301366 AK311676	-90277	+	AB527162 CU013064 CU013352 CU680570 BC013352 BC108251 TSC_hg19_v1_chr22_-_20104501 CR456354	5589	-	TSC_hg19_v1_chr22_-_20104718 BC017184	5817	-	TSC_hg19_v1_chr22_-_20104748 AK304068 AK057029 NM_022727 NM_182984	5874	-	NM_001190326|DGCR8|54487|DiGeorge syndrome critical region gene 8##NM_022720|DGCR8|54487|DiGeorge syndrome critical region gene 8##AK313357|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC037564|DGCR8|54487|DiGeorge syndrome critical region gene 8##BC009984|DGCR8|54487|DiGeorge syndrome critical region gene 8##AK297922|C22orf25|128989|chromosome 22 open reading frame 25##AK298593|C22orf25|128989|chromosome 22 open reading frame 25##AK297075|C22orf25|128989|chromosome 22 open reading frame 25##AK316020|C22orf25|128989|chromosome 22 open reading frame 25##AK092484|C22orf25|128989|chromosome 22 open reading frame 25##CR627452|C22orf25|128989|chromosome 22 open reading frame 25##AK316056|C22orf25|128989|chromosome 22 open reading frame 25##BC041339|C22orf25|128989|chromosome 22 open reading frame 25##NM_152906|C22orf25|128989|chromosome 22 open reading frame 25##AK301054|C22orf25|128989|chromosome 22 open reading frame 25##AK301366|C22orf25|128989|chromosome 22 open reading frame 25##AK311676|C22orf25|128989|chromosome 22 open reading frame 25##BC013352|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##BC108251|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##CR456354|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##BC017184|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##AK304068|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##AK057029|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##NM_022727|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##NM_182984|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	0.997672	0.173446	denovo_WM_7:0:0.670	denovo_WM_7:1:0.260
chr5	6389525	6389667	reg1005842.p1	6.444	+	AB591030 AY277599 AY598325 TSC_hg19_v1_chr5_-_6378661 AY453397 BC003353 NM_032286	-10946	-	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	-966687	+	TSC_hg19_v1_chr5_+_5422777 AK126937	-966821	+	NM_001145161 TSC_hg19_v1_chr5_+_6448927 BC150554 BC127723 AK308577	59257	+	TSC_hg19_v1_chr5_+_6449114 AK057805	59593	+	TSC_hg19_v1_chr5_-_6633158 AK291144 BC137083 AK298980	243558	-	AY277599|MED10|84246|mediator complex subunit 10##AY598325|MED10|84246|mediator complex subunit 10##AY453397|MED10|84246|mediator complex subunit 10##BC003353|MED10|84246|mediator complex subunit 10##NM_032286|MED10|84246|mediator complex subunit 10##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947##NM_001145161|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##BC150554|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##BC127723|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##AK308577|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##AK057805|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##AK291144|NSUN2|54888|NOP2/Sun domain family, member 2##BC137083|NSUN2|54888|NOP2/Sun domain family, member 2##AK298980|NSUN2|54888|NOP2/Sun domain family, member 2	0.997488	0.0	
chr12	97769121	97769279	reg1006435.p1	6.443	+	BC027605 NM_001135175	-467957	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	-468169	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-974883	-	TSC_hg19_v1_chr12_-_98897622 AK126817	1128427	-	TSC_hg19_v1_chr12_+_98909388 NM_001032283 NM_001032284 NM_003276 BC050383 BC053675	1140167	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	1140207	+	BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK126817|LOC643770|643770|uncharacterized LOC643770##NM_001032283|TMPO|7112|thymopoietin##NM_001032284|TMPO|7112|thymopoietin##NM_003276|TMPO|7112|thymopoietin##BC050383|TMPO|7112|thymopoietin##BC053675|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin	1.953396	0.0	denovo_WM_7:0:0.956
chr19	1661037	1661217	reg1000495.p1	6.443	+	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	-8788	-	AB385055 BC110579 BC110580 M31523 NM_001136139	-10862	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-55654	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	92625	+	TSC_hg19_v1_chr19_+_1776120 AK074606	115060	+	AY302538 NM_001178002 TSC_hg19_v1_chr19_-_1812276 BC035162 NM_138813 AK125225 AK125969	151110	-	M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##NM_001080488|ONECUT3|390874|one cut homeobox 3##AY302538|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_001178002|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##BC035162|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_138813|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125225|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125969|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3	0.0	0.0	
chr3	197539248	197539400	reg1004984.p1	6.443	+	TSC_hg19_v1_chr3_+_197518134 AK300466 AK303521 BC007504 NM_032773 CU675675 DQ893268 DQ896598	-21185	+	TSC_hg19_v1_chr3_+_197518124 AK293745	-21227	+	TSC_hg19_v1_chr3_+_197477223 AK302546	-62083	+	BC068973 TSC_hg19_v1_chr3_-_197676768 AK027224 NM_001134435	137451	-	BC010949 TSC_hg19_v1_chr3_+_197677063 AY871273 NM_000996 AB055768 X52966 AK026542 BC001037 BC061890 BC017093	137752	+	BC016156 TSC_hg19_v1_chr3_-_197686873 AK095094 AL136889 NM_032263	147540	-	AK300466|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##AK303521|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##BC007504|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##NM_032773|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##DQ893268|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##DQ896598|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##AK293745|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##AK302546|FYTTD1|84248|forty-two-three domain containing 1##BC068973|IQCG|84223|IQ motif containing G##AK027224|IQCG|84223|IQ motif containing G##NM_001134435|IQCG|84223|IQ motif containing G##BC010949|RPL35A|6165|ribosomal protein L35a##AY871273|RPL35A|6165|ribosomal protein L35a##NM_000996|RPL35A|6165|ribosomal protein L35a##AB055768|RPL35A|6165|ribosomal protein L35a##X52966|RPL35A|6165|ribosomal protein L35a##AK026542|RPL35A|6165|ribosomal protein L35a##BC001037|RPL35A|6165|ribosomal protein L35a##BC061890|RPL35A|6165|ribosomal protein L35a##BC017093|RPL35A|6165|ribosomal protein L35a##BC016156|IQCG|84223|IQ motif containing G##AK095094|IQCG|84223|IQ motif containing G##AL136889|IQCG|84223|IQ motif containing G##NM_032263|IQCG|84223|IQ motif containing G	0.998968	0.0	
chr11	120804934	120805030	reg1005645.p1	6.442	+	AB384776 NM_014619 S67803	-273955	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-422517	+	BC063117 NM_001198665 NM_015313	-597365	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	89828	+	NM_005422	168392	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	358423	+	NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_005422|TECTA|7007|tectorin alpha##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like	1.296381	0.185249	denovo_WM_7:-47:0.239	denovo_WM_7:-62:0.237
chr1	166839071	166839179	reg1006509.p1	6.442	+	TSC_hg19_v1_chr1_+_166808734 AB040946 NM_017542 AK056711 BC131624	-30380	+	AK293946 AK299537 TSC_hg19_v1_chr1_+_166808680	-30433	+	TSC_hg19_v1_chr1_-_166136076 BC114214	-702985	-	AB590621 EU446601 AK290964 TSC_hg19_v1_chr1_-_166845502 BC015401 AK309250	6373	-	TSC_hg19_v1_chr1_-_166845533 AK291922 NM_053053	6468	-	AB527117 AF503509 NM_199351 TSC_hg19_v1_chr1_-_166944658	105557	-	AB040946|POGK|57645|pogo transposable element with KRAB domain##NM_017542|POGK|57645|pogo transposable element with KRAB domain##AK056711|POGK|57645|pogo transposable element with KRAB domain##BC131624|POGK|57645|pogo transposable element with KRAB domain##AK293946|POGK|57645|pogo transposable element with KRAB domain##AK299537|POGK|57645|pogo transposable element with KRAB domain##BC114214|FAM78B|149297|family with sequence similarity 78, member B##EU446601|TADA1|117143|transcriptional adaptor 1##AK290964|TADA1|117143|transcriptional adaptor 1##BC015401|TADA1|117143|transcriptional adaptor 1##AK309250|TADA1|117143|transcriptional adaptor 1##AK291922|TADA1|117143|transcriptional adaptor 1##NM_053053|TADA1|117143|transcriptional adaptor 1##AF503509|ILDR2|387597|immunoglobulin-like domain containing receptor 2##NM_199351|ILDR2|387597|immunoglobulin-like domain containing receptor 2	0.828897	0.0	denovo_WM_7:33:0.500
chr11	74715407	74715555	reg1006343.p1	6.441	+	TSC_hg19_v1_chr11_+_74699955 NM_006656 AK022450 AK290442 AK303540	-15517	+	TSC_hg19_v1_chr11_+_74660321 BC064957 BC106066 AB587348 CU687980 D14658	-55141	+	TSC_hg19_v1_chr11_+_74660317 BC067821	-55163	+	NM_001005285 BC136958 BC136959	85296	-	NM_001145212 NM_007256 FM209050 TSC_hg19_v1_chr11_+_74862151 AK304783 AK302492 AK290234 AK300134 AB020687 BC127254 BC041095 AB026256 AL117465	146663	+	FM209054 FM209053 AF205073 NM_001145211 AK294503	155360	+	NM_006656|NEU3|10825|sialidase 3 (membrane sialidase)##AK022450|NEU3|10825|sialidase 3 (membrane sialidase)##AK290442|NEU3|10825|sialidase 3 (membrane sialidase)##AK303540|NEU3|10825|sialidase 3 (membrane sialidase)##BC064957|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##BC106066|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##D14658|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##BC067821|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##NM_001005285|OR2AT4|341152|olfactory receptor, family 2, subfamily AT, member 4##BC136958|OR2AT4|341152|olfactory receptor, family 2, subfamily AT, member 4##BC136959|OR2AT4|341152|olfactory receptor, family 2, subfamily AT, member 4##NM_001145212|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_007256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209050|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK304783|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK302492|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK290234|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK300134|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB020687|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC127254|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC041095|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB026256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AL117465|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209053|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF205073|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145211|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK294503|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1	0.278669	0.0	
chr2	149572716	149572855	reg1006668.p1	6.441	+	NM_015630 AF286904 BC093818 BC093820	-170182	+	TSC_hg19_v1_chr2_+_149402332 AK125789	-170449	+	NM_181742	-793613	-	TSC_hg19_v1_chr2_+_149632795 NM_004522 BC002721 BC025961 AB011103	60011	+	BC017298 TSC_hg19_v1_chr2_+_149632844	60055	+	TSC_hg19_v1_chr2_+_149633176 AB384491	60394	+	NM_015630|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##AF286904|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##BC093818|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##BC093820|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##AK125789|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##NM_181742|ORC4|5000|origin recognition complex, subunit 4##NM_004522|KIF5C|3800|kinesin family member 5C##BC002721|KIF5C|3800|kinesin family member 5C##BC025961|KIF5C|3800|kinesin family member 5C##AB011103|KIF5C|3800|kinesin family member 5C##BC017298|KIF5C|3800|kinesin family member 5C	1.817905	0.0	denovo_WM_7:-9:0.621	denovo_WM_7:-28:0.311
chr2	26120489	26120636	reg1005936.p1	6.441	+	TSC_hg19_v1_chr2_-_26101329 BX648218 CR933613 BX647527	-19139	-	TSC_hg19_v1_chr2_-_26101321 AB051472 NM_018263	-19248	-	TSC_hg19_v1_chr2_-_26101174 AB084279	-19389	-	BC092406 TSC_hg19_v1_chr2_-_26205366 AK293738 AK315324 BC042486 BX571741	84785	-	TSC_hg19_v1_chr2_-_26205437 NM_002254	84878	-	NM_016131 TSC_hg19_v1_chr2_+_26256952 AL136650 AK023223	136292	+	BX648218|ASXL2|55252|additional sex combs like 2 (Drosophila)##CR933613|ASXL2|55252|additional sex combs like 2 (Drosophila)##BX647527|ASXL2|55252|additional sex combs like 2 (Drosophila)##AB051472|ASXL2|55252|additional sex combs like 2 (Drosophila)##NM_018263|ASXL2|55252|additional sex combs like 2 (Drosophila)##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)##BC092406|KIF3C|3797|kinesin family member 3C##AK293738|KIF3C|3797|kinesin family member 3C##AK315324|KIF3C|3797|kinesin family member 3C##BC042486|KIF3C|3797|kinesin family member 3C##BX571741|KIF3C|3797|kinesin family member 3C##NM_002254|KIF3C|3797|kinesin family member 3C##NM_016131|RAB10|10890|RAB10, member RAS oncogene family##AL136650|RAB10|10890|RAB10, member RAS oncogene family##AK023223|RAB10|10890|RAB10, member RAS oncogene family	0.986746	0.0	denovo_WM_7:4:0.567
chrX	3858167	3858291	reg1006371.p2	6.441	+	TSC_hg19_v1_chrX_-_3631668 NM_005044	-226511	-	TSC_hg19_v1_chrX_-_3631645 X85545	-226584	-	TSC_hg19_v1_chrX_-_3631619 BC041073	-226687	-	AB033086 AF376803 AX773938 NM_020742	2287658	-	AK055471 BC034018 NM_181332	2288451	-	AF167078 AF167079 NM_016379	2594929	-	NM_005044|PRKX|5613|protein kinase, X-linked##X85545|PRKX|5613|protein kinase, X-linked##BC041073|PRKX|5613|protein kinase, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A	0.0	0.958188	CTCF.p2:-17:0.958
chr22	31111275	31111405	reg1005186.p1	6.439	+	AF323731 NM_030758 AK097581 AK294007 BC118914 AB051451 AB384622 AF288741	-20495	+	BC031973 TSC_hg19_v1_chr22_+_31063955	-47406	+	TSC_hg19_v1_chr22_-_31063837 BC030987 BC028724 AF461689 AK056074 NM_152511	-47505	-	AB020659 NM_014941	252846	-	AK056480 TSC_hg19_v1_chr22_+_31366813	255397	+	TSC_hg19_v1_chr22_+_31477303 NM_006932 NM_134269 NM_134270 AK128719 AF064238 AJ010306 AY061971 AY061972 Y13492 AK096953 AK293681 BC034237 AK300854	365942	+	AF323731|OSBP2|23762|oxysterol binding protein 2##NM_030758|OSBP2|23762|oxysterol binding protein 2##AK097581|OSBP2|23762|oxysterol binding protein 2##AK294007|OSBP2|23762|oxysterol binding protein 2##BC118914|OSBP2|23762|oxysterol binding protein 2##AB051451|OSBP2|23762|oxysterol binding protein 2##AF288741|OSBP2|23762|oxysterol binding protein 2##BC030987|DUSP18|150290|dual specificity phosphatase 18##BC028724|DUSP18|150290|dual specificity phosphatase 18##AF461689|DUSP18|150290|dual specificity phosphatase 18##AK056074|DUSP18|150290|dual specificity phosphatase 18##NM_152511|DUSP18|150290|dual specificity phosphatase 18##AB020659|MORC2|22880|MORC family CW-type zinc finger 2##NM_014941|MORC2|22880|MORC family CW-type zinc finger 2##NM_006932|SMTN|6525|smoothelin##NM_134269|SMTN|6525|smoothelin##NM_134270|SMTN|6525|smoothelin##AK128719|SMTN|6525|smoothelin##AF064238|SMTN|6525|smoothelin##AJ010306|SMTN|6525|smoothelin##AY061971|SMTN|6525|smoothelin##AY061972|SMTN|6525|smoothelin##Y13492|SMTN|6525|smoothelin##AK096953|SMTN|6525|smoothelin##AK293681|SMTN|6525|smoothelin##BC034237|SMTN|6525|smoothelin##AK300854|SMTN|6525|smoothelin	1.67746	0.0	denovo_WM_7:21:0.974	denovo_WM_7:-89:0.593
chr14	52333190	52333346	reg1006846.p2	6.437	+	TSC_hg19_v1_chr14_+_52327416 BC020774	-5832	+	TSC_hg19_v1_chr14_+_52327387 AL832878	-5876	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	-5904	+	AF087877 AF100755 AF151857 DQ525179 NM_016039 TSC_hg19_v1_chr14_+_52456231 AK312004 BC001722	122986	+	TSC_hg19_v1_chr14_+_52456323 EU446806 AB463506 AY817175	123071	+	AJ223500 D86425 AB385187 CU690132 TSC_hg19_v1_chr14_-_52535721	202454	-	BC020774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AL832878|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AF087877|C14orf166|51637|chromosome 14 open reading frame 166##AF100755|C14orf166|51637|chromosome 14 open reading frame 166##AF151857|C14orf166|51637|chromosome 14 open reading frame 166##DQ525179|C14orf166|51637|chromosome 14 open reading frame 166##NM_016039|C14orf166|51637|chromosome 14 open reading frame 166##AK312004|C14orf166|51637|chromosome 14 open reading frame 166##BC001722|C14orf166|51637|chromosome 14 open reading frame 166##EU446806|C14orf166|51637|chromosome 14 open reading frame 166##AY817175|C14orf166|51637|chromosome 14 open reading frame 166##AJ223500|NID2|22795|nidogen 2 (osteonidogen)##D86425|NID2|22795|nidogen 2 (osteonidogen)	0.996745	0.0	denovo_WM_7:26:0.536	denovo_WM_7:27:0.460
chr6	156957338	156957468	reg1005456.p1	6.437	+	AF190122 NM_015718	-1180367	-	TSC_hg19_v1_chr6_-_155635619 BC005183 BC017788 NM_016020 AF151833 BC054007 AK289484	-1321780	-	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	-1321818	-	TSC_hg19_v1_chr6_+_157099052 NM_017519 NM_020732 Y08266	141660	+	TSC_hg19_v1_chr6_+_157099206 AB587572	141822	+	TSC_hg19_v1_chr6_+_157099283 AF521671	141881	+	AF190122|NOX3|50508|NADPH oxidase 3##NM_015718|NOX3|50508|NADPH oxidase 3##BC005183|TFB1M|51106|transcription factor B1, mitochondrial##BC017788|TFB1M|51106|transcription factor B1, mitochondrial##NM_016020|TFB1M|51106|transcription factor B1, mitochondrial##AF151833|TFB1M|51106|transcription factor B1, mitochondrial##BC054007|TFB1M|51106|transcription factor B1, mitochondrial##AK289484|TFB1M|51106|transcription factor B1, mitochondrial##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial##NM_017519|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##NM_020732|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##Y08266|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)	1.868662	0.0	denovo_WM_7:4:0.878	denovo_WM_7:21:0.935
chr20	4956389	4956519	reg1006628.p1	6.436	+	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-152260	-	AY154472 NM_170774	-160686	-	AK313404 TSC_hg19_v1_chr20_+_4702555 BC043644 NM_012409 AF187843 AY358985	-253920	+	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	25706	-	BC013112 AF164142 NM_203327	34471	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	137161	-	CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154472|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_170774|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK313404|PRND|23627|prion protein 2 (dublet)##BC043644|PRND|23627|prion protein 2 (dublet)##NM_012409|PRND|23627|prion protein 2 (dublet)##AF187843|PRND|23627|prion protein 2 (dublet)##AY358985|PRND|23627|prion protein 2 (dublet)##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30	0.981688	0.0	denovo_WM_7:56:0.704
chr3	29321824	29322004	reg1000715.p1	6.436	+	NM_001040432	-889928	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-931353	-	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	-931532	-	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	1050	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	1326108	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	1326489	+	NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)	0.996353	0.0	
chr7	105494846	105495026	reg1005333.p1	6.436	+	AK300338 NM_138495	-175328	-	TSC_hg19_v1_chr7_-_105221933 BC062748 BC105284	-273001	-	BC068483 NM_021930 AK055508 TSC_hg19_v1_chr7_+_105172647 AK308126 AF317622 HQ257980	-322290	+	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	22049	-	TSC_hg19_v1_chr7_+_105517250 AK125261	22328	+	NM_152750 AK126338 AK131293 AK304118 BC111696 BC111738 AK304352	108762	+	AK300338|ATXN7L1|222255|ataxin 7-like 1##NM_138495|ATXN7L1|222255|ataxin 7-like 1##BC105284|EFCAB10|100130771|EF-hand calcium binding domain 10##BC068483|RINT1|60561|RAD50 interactor 1##NM_021930|RINT1|60561|RAD50 interactor 1##AK055508|RINT1|60561|RAD50 interactor 1##AK308126|RINT1|60561|RAD50 interactor 1##AF317622|RINT1|60561|RAD50 interactor 1##HQ257980|RINT1|60561|RAD50 interactor 1##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##AK125261|CDHR3|222256|cadherin-related family member 3##NM_152750|CDHR3|222256|cadherin-related family member 3##AK126338|CDHR3|222256|cadherin-related family member 3##AK131293|CDHR3|222256|cadherin-related family member 3##AK304118|CDHR3|222256|cadherin-related family member 3##BC111696|CDHR3|222256|cadherin-related family member 3##BC111738|CDHR3|222256|cadherin-related family member 3##AK304352|CDHR3|222256|cadherin-related family member 3	1.991602	0.0	denovo_WM_7:-7:0.235	denovo_WM_7:-8:0.235	denovo_WM_7:-9:0.235	denovo_WM_7:-10:0.235	denovo_WM_7:48:0.787
chr11	71367124	71367235	reg1007512.p1	6.435	+	BC130498 BC130502 AB126080 NM_001005405	-73265	-	AB126079 BC137550 BC137566 NM_001012710	-90571	+	NM_005553 X63755 BC101744 AB126078 CU686892 BC069531	-107595	+	TSC_hg19_v1_chr11_+_71498567 NM_001099653 NM_018172 NM_152563 AK130709 AK311675 AK311518 BC032519 AK001523 AK293221 AK311428 AK315454	131428	+	BC073927 TSC_hg19_v1_chr11_-_71524901 BC054093	157727	-	AF529416 NM_001002035	177066	+	BC130498|KRTAP5-11|440051|keratin associated protein 5-11##BC130502|KRTAP5-11|440051|keratin associated protein 5-11##AB126080|KRTAP5-11|440051|keratin associated protein 5-11##NM_001005405|KRTAP5-11|440051|keratin associated protein 5-11##AB126079|KRTAP5-10|387273|keratin associated protein 5-10##BC137550|KRTAP5-10|387273|keratin associated protein 5-10##BC137566|KRTAP5-10|387273|keratin associated protein 5-10##NM_001012710|KRTAP5-10|387273|keratin associated protein 5-10##NM_005553|KRTAP5-9|3846|keratin associated protein 5-9##X63755|KRTAP5-9|3846|keratin associated protein 5-9##BC101744|KRTAP5-9|3846|keratin associated protein 5-9##AB126078|KRTAP5-9|3846|keratin associated protein 5-9##BC069531|KRTAP5-9|3846|keratin associated protein 5-9##NM_001099653|FAM86C1|55199|family with sequence similarity 86, member C1##NM_018172|FAM86C1|55199|family with sequence similarity 86, member C1##NM_152563|FAM86C1|55199|family with sequence similarity 86, member C1##AK130709|FAM86C1|55199|family with sequence similarity 86, member C1##AK311675|FAM86C1|55199|family with sequence similarity 86, member C1##AK311518|FAM86C1|55199|family with sequence similarity 86, member C1##BC032519|FAM86C1|55199|family with sequence similarity 86, member C1##AK001523|FAM86C1|55199|family with sequence similarity 86, member C1##AK293221|FAM86C1|55199|family with sequence similarity 86, member C1##AK311428|FAM86C1|55199|family with sequence similarity 86, member C1##AK315454|FAM86C1|55199|family with sequence similarity 86, member C1##BC073927|LOC285407|285407|asparagine-linked glycosylation 1 homolog pseudogene##AF529416|DEFB108B|245911|defensin, beta 108B##NM_001002035|DEFB108B|245911|defensin, beta 108B	1.232517	0.0	
chr2	148671343	148671517	reg1004549.p1	6.435	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	-68785	+	TSC_hg19_v1_chr2_+_148602300 AK314124	-69095	+	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	-69313	+	TSC_hg19_v1_chr2_-_148778310 AK225092 BC005388 AF022108 AF047598 AF132596 BC014847 AK295721 AK291989 AK294878 AK298862 NM_001190882 NM_001190879 AK299749 NM_002552 NM_001190881 NM_181741	106932	-	TSC_hg19_v1_chr2_+_148778636 NM_018328 EF542797	107179	+	NM_181742	107742	-	BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK225092|ORC4|5000|origin recognition complex, subunit 4##BC005388|ORC4|5000|origin recognition complex, subunit 4##AF022108|ORC4|5000|origin recognition complex, subunit 4##AF047598|ORC4|5000|origin recognition complex, subunit 4##AF132596|ORC4|5000|origin recognition complex, subunit 4##BC014847|ORC4|5000|origin recognition complex, subunit 4##AK295721|ORC4|5000|origin recognition complex, subunit 4##AK291989|ORC4|5000|origin recognition complex, subunit 4##AK294878|ORC4|5000|origin recognition complex, subunit 4##AK298862|ORC4|5000|origin recognition complex, subunit 4##NM_001190882|ORC4|5000|origin recognition complex, subunit 4##NM_001190879|ORC4|5000|origin recognition complex, subunit 4##AK299749|ORC4|5000|origin recognition complex, subunit 4##NM_002552|ORC4|5000|origin recognition complex, subunit 4##NM_001190881|ORC4|5000|origin recognition complex, subunit 4##NM_181741|ORC4|5000|origin recognition complex, subunit 4##NM_018328|MBD5|55777|methyl-CpG binding domain protein 5##EF542797|MBD5|55777|methyl-CpG binding domain protein 5##NM_181742|ORC4|5000|origin recognition complex, subunit 4	2.004282	0.0	denovo_WM_7:-15:0.951	denovo_WM_7:-30:0.951
chr1	37973381	37973510	reg1006689.p1	6.434	+	FJ695517 TSC_hg19_v1_chr1_+_37940180 AK093343 AX748065 BC005001	-33258	+	TSC_hg19_v1_chr1_+_37940140 AK026884	-33295	+	TSC_hg19_v1_chr1_+_37940118 NM_025079	-33348	+	AY211926 AY007166 DQ099384 TSC_hg19_v1_chr1_-_37980356 AB463504 CU677607 EU831681 EU832519 EU832600 AK021792 AK225434 AK225598 AK308118 BX538212 BX640719 NM_022756 BC016328 BC056406 AK309663	6922	-	CU693250 AB464215 AY081909 TSC_hg19_v1_chr1_-_38019895 AK297176 AK300796 AK027622 AK022615 BC027040 NM_024700 AK293229 AK315574	46446	-	TSC_hg19_v1_chr1_+_38022531 BX647913 NM_003462 BC039074 AF006386 AK225935 AK299918 BC046117 AK290502 AK295199	49115	+	FJ695517|ZC3H12A|80149|zinc finger CCCH-type containing 12A##AK093343|ZC3H12A|80149|zinc finger CCCH-type containing 12A##BC005001|ZC3H12A|80149|zinc finger CCCH-type containing 12A##AK026884|ZC3H12A|80149|zinc finger CCCH-type containing 12A##NM_025079|ZC3H12A|80149|zinc finger CCCH-type containing 12A##AY211926|MEAF6|64769|MYST/Esa1-associated factor 6##AY007166|MEAF6|64769|MYST/Esa1-associated factor 6##DQ099384|MEAF6|64769|MYST/Esa1-associated factor 6##EU831681|MEAF6|64769|MYST/Esa1-associated factor 6##EU832519|MEAF6|64769|MYST/Esa1-associated factor 6##EU832600|MEAF6|64769|MYST/Esa1-associated factor 6##AK021792|MEAF6|64769|MYST/Esa1-associated factor 6##AK225434|MEAF6|64769|MYST/Esa1-associated factor 6##AK225598|MEAF6|64769|MYST/Esa1-associated factor 6##AK308118|MEAF6|64769|MYST/Esa1-associated factor 6##BX538212|MEAF6|64769|MYST/Esa1-associated factor 6##BX640719|MEAF6|64769|MYST/Esa1-associated factor 6##NM_022756|MEAF6|64769|MYST/Esa1-associated factor 6##BC016328|MEAF6|64769|MYST/Esa1-associated factor 6##BC056406|MEAF6|64769|MYST/Esa1-associated factor 6##AK309663|MEAF6|64769|MYST/Esa1-associated factor 6##AY081909|SNIP1|79753|Smad nuclear interacting protein 1##AK297176|SNIP1|79753|Smad nuclear interacting protein 1##AK300796|SNIP1|79753|Smad nuclear interacting protein 1##AK027622|SNIP1|79753|Smad nuclear interacting protein 1##AK022615|SNIP1|79753|Smad nuclear interacting protein 1##BC027040|SNIP1|79753|Smad nuclear interacting protein 1##NM_024700|SNIP1|79753|Smad nuclear interacting protein 1##AK293229|SNIP1|79753|Smad nuclear interacting protein 1##AK315574|SNIP1|79753|Smad nuclear interacting protein 1##BX647913|DNALI1|7802|dynein, axonemal, light intermediate chain 1##NM_003462|DNALI1|7802|dynein, axonemal, light intermediate chain 1##BC039074|DNALI1|7802|dynein, axonemal, light intermediate chain 1##AF006386|DNALI1|7802|dynein, axonemal, light intermediate chain 1##AK225935|DNALI1|7802|dynein, axonemal, light intermediate chain 1##AK299918|DNALI1|7802|dynein, axonemal, light intermediate chain 1##BC046117|DNALI1|7802|dynein, axonemal, light intermediate chain 1##AK290502|DNALI1|7802|dynein, axonemal, light intermediate chain 1##AK295199|DNALI1|7802|dynein, axonemal, light intermediate chain 1	0.999686	0.0	denovo_WM_7:-12:0.721
chr18	13610097	13610277	reg1005790.p1	6.433	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-391402	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-618842	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-662123	+	NM_001003674 NM_001003675	1477	+	AF009426 AF009427 NM_004338 NM_181483	10679	+	TSC_hg19_v1_chr18_-_13726549 AK055618	116319	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	2.110245	0.0	denovo_WM_7:-60:0.555
chr4	123074245	123074409	reg1005452.p2	6.433	+	AY865574 NM_001130698	-201419	-	AB255423 AB255424 BC093682 BC093684 BC143239 NM_003305	-220098	-	AB528453 CU689486 DQ890888 DQ896810 BC032691 AF521643 AF521644 AK001577 AK309803 AK308076 NM_018190 NM_176824	-282768	-	DQ335469 NM_015312	17430	+	CR936613 TSC_hg19_v1_chr4_+_123161129	86797	+	NM_139243 AK057303	225816	+	AY865574|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_001130698|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##AB255423|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##AB255424|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC093682|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC093684|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##BC143239|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_003305|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##DQ890888|BBS7|55212|Bardet-Biedl syndrome 7##DQ896810|BBS7|55212|Bardet-Biedl syndrome 7##BC032691|BBS7|55212|Bardet-Biedl syndrome 7##AF521643|BBS7|55212|Bardet-Biedl syndrome 7##AF521644|BBS7|55212|Bardet-Biedl syndrome 7##AK001577|BBS7|55212|Bardet-Biedl syndrome 7##AK309803|BBS7|55212|Bardet-Biedl syndrome 7##AK308076|BBS7|55212|Bardet-Biedl syndrome 7##NM_018190|BBS7|55212|Bardet-Biedl syndrome 7##NM_176824|BBS7|55212|Bardet-Biedl syndrome 7##DQ335469|KIAA1109|84162|KIAA1109##NM_015312|KIAA1109|84162|KIAA1109##CR936613|KIAA1109|84162|KIAA1109##NM_139243|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK057303|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)	0.997414	0.0	
chr6	74232217	74232374	reg1006688.p1	6.433	+	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-1549	-	TSC_hg19_v1_chr6_-_74230163 AY043301	-2125	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	-3126	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	131335	-	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	131485	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	173270	+	BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule	1.906197	0.0	denovo_WM_7:28:0.775	denovo_WM_7:45:0.232	denovo_WM_7:46:0.232	denovo_WM_7:47:0.242	denovo_WM_7:48:0.242
chr12	6553996	6554151	reg1006397.p1	6.432	+	TSC_hg19_v1_chr12_+_6493333 AK095418 BC026262 AK027080 L04270 NM_002342 AB527559 DQ891995 DQ895185 CU693188	-60701	+	AK304379 NM_001159575	-67551	-	NM_001038	-69169	-	AK315732 NM_001242 BC012160 M63928 DQ892296 EU176659 AB590221 CU680244	73	+	NM_018009 TSC_hg19_v1_chr12_+_6561272 BC015017 AK223163 AK001005 AK002056 AK222956 AK098035 HQ258015	7221	+	TSC_hg19_v1_chr12_-_6579844 AF060538 BC023286 AK289498 AK296294 AK303137 AK309184 NM_014231 NM_016830 NM_199245	25741	-	AK095418|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##BC026262|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK027080|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##L04270|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##NM_002342|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ891995|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ895185|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK304379|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001159575|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001038|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##AK315732|CD27|939|CD27 molecule##NM_001242|CD27|939|CD27 molecule##BC012160|CD27|939|CD27 molecule##M63928|CD27|939|CD27 molecule##DQ892296|CD27|939|CD27 molecule##EU176659|CD27|939|CD27 molecule##NM_018009|TAPBPL|55080|TAP binding protein-like##BC015017|TAPBPL|55080|TAP binding protein-like##AK223163|TAPBPL|55080|TAP binding protein-like##AK001005|TAPBPL|55080|TAP binding protein-like##AK002056|TAPBPL|55080|TAP binding protein-like##AK222956|TAPBPL|55080|TAP binding protein-like##AK098035|TAPBPL|55080|TAP binding protein-like##HQ258015|TAPBPL|55080|TAP binding protein-like##AF060538|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##BC023286|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK289498|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK296294|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK303137|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK309184|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_014231|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_016830|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_199245|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)	0.946036	0.0	denovo_WM_7:19:0.408	denovo_WM_7:21:0.263	denovo_WM_7:22:0.275
chr21	43348572	43348752	reg1004559.p1	6.432	+	BC062323 AL833323 NM_199050	-1873	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-49164	-	AK027424 TSC_hg19_v1_chr21_-_43187270	-161395	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	25421	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	81809	-	AB051810 AB051811 NM_001199527 NM_001199528	134405	+	BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1	1.113472	0.0	
chr4	156536649	156536795	reg1006619.p2	6.432	+	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	-238611	-	TSC_hg19_v1_chr4_-_156297990 AK301075 BC146864 BC128540 BC128541 BC056683	-238714	-	TSC_hg19_v1_chr4_-_156297959 BC022852	-238767	-	NM_000856 NM_001130682 NM_001130686 NM_001130687 X66534 Y15723 AK312952 BC095395 TSC_hg19_v1_chr4_+_156587999 AK309950 AK096588 NM_001130683 NM_001130685 BX649180 AK226125 BX647200 BC012627	51453	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	52095	+	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	143482	+	AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9##AK301075|MAP9|79884|microtubule-associated protein 9##BC146864|MAP9|79884|microtubule-associated protein 9##BC128540|MAP9|79884|microtubule-associated protein 9##BC128541|MAP9|79884|microtubule-associated protein 9##BC056683|MAP9|79884|microtubule-associated protein 9##BC022852|MAP9|79884|microtubule-associated protein 9##NM_000856|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130682|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130686|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130687|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##X66534|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##Y15723|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK312952|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC095395|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK309950|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK096588|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130683|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130685|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX649180|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK226125|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX647200|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC012627|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3	1.167558	0.0	denovo_WM_7:-1:0.271	denovo_WM_7:-2:0.556
chr19	18197967	18198065	reg1001219.p2	6.431	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	-284	-	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	-78998	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	-86066	+	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	10593	+	BC063240 TSC_hg19_v1_chr19_+_18263972	65965	+	TSC_hg19_v1_chr19_+_18264004 BC070082 NM_005027 BC090249	66016	+	EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3##BC070082|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_005027|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##BC090249|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)	0.991743	0.0	denovo_WM_7:12:0.331	denovo_WM_7:13:0.331	denovo_WM_7:14:0.331
chr16	4577003	4577104	reg1005425.p2	6.430	+	AK311295 BC007604 TSC_hg19_v1_chr16_-_4563123	-14002	-	AK093388 NM_001127205	-31195	+	NM_001127204 NM_002134 AK313660 TSC_hg19_v1_chr16_+_4526411 BC002396 S34389 AK222629	-50650	+	TSC_hg19_v1_chr16_-_4588442 AF195661 AL833853 NM_001199054	11384	-	TSC_hg19_v1_chr16_-_4588775 BC002882 AK292036 AK302297 AL136698 AK294257 DQ167023 NM_001199055 NM_001199056 NM_013399 AK307067 AK308532	11739	-	NM_001145011	29437	+	AK311295|C16orf5|29965|chromosome 16 open reading frame 5##BC007604|C16orf5|29965|chromosome 16 open reading frame 5##AK093388|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127205|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127204|HMOX2|3163|heme oxygenase (decycling) 2##NM_002134|HMOX2|3163|heme oxygenase (decycling) 2##AK313660|HMOX2|3163|heme oxygenase (decycling) 2##BC002396|HMOX2|3163|heme oxygenase (decycling) 2##S34389|HMOX2|3163|heme oxygenase (decycling) 2##AK222629|HMOX2|3163|heme oxygenase (decycling) 2##AF195661|C16orf5|29965|chromosome 16 open reading frame 5##AL833853|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199054|C16orf5|29965|chromosome 16 open reading frame 5##BC002882|C16orf5|29965|chromosome 16 open reading frame 5##AK292036|C16orf5|29965|chromosome 16 open reading frame 5##AK302297|C16orf5|29965|chromosome 16 open reading frame 5##AL136698|C16orf5|29965|chromosome 16 open reading frame 5##AK294257|C16orf5|29965|chromosome 16 open reading frame 5##DQ167023|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199055|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199056|C16orf5|29965|chromosome 16 open reading frame 5##NM_013399|C16orf5|29965|chromosome 16 open reading frame 5##AK307067|C16orf5|29965|chromosome 16 open reading frame 5##AK308532|C16orf5|29965|chromosome 16 open reading frame 5##NM_001145011|C16orf96|342346|chromosome 16 open reading frame 96	0.999649	0.0	denovo_WM_7:45:0.425	denovo_WM_7:46:0.425
chr19	10764611	10764773	reg1006790.p2	6.430	+	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	-181	-	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	-28473	+	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	-51559	+	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	248	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	354	+	TSC_hg19_v1_chr19_+_10765110 AF141870	476	+	BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727##FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF141870|ILF3|3609|interleukin enhancer binding factor 3, 90kDa	0.0	0.0	
chr4	111189612	111189738	reg1006238.p1	6.430	+	TSC_hg19_v1_chr4_-_111119772 BC001305 AK027031 NM_001130721 NM_024090	-69890	-	AK299306 NM_001178130 NM_001178131 NM_001963 X04571	-355628	+	AK126648 NM_198506	-417190	+	TSC_hg19_v1_chr4_+_111397181 AM888273 AM888274 AM888275 AM888276 AM888277 AM888278 AM888279 AM888280 AM888281 AM888282 AM888283 NM_001977 BC094770 L12468 BX641012 L14721 AK313412	207698	+	AK313987 TSC_hg19_v1_chr4_-_111543909	354235	-	BC007987 AF048722 TSC_hg19_v1_chr4_-_111544234 BC013998 NM_000325	354600	-	BC001305|ELOVL6|79071|ELOVL fatty acid elongase 6##AK027031|ELOVL6|79071|ELOVL fatty acid elongase 6##NM_001130721|ELOVL6|79071|ELOVL fatty acid elongase 6##NM_024090|ELOVL6|79071|ELOVL fatty acid elongase 6##AK299306|EGF|1950|epidermal growth factor##NM_001178130|EGF|1950|epidermal growth factor##NM_001178131|EGF|1950|epidermal growth factor##NM_001963|EGF|1950|epidermal growth factor##X04571|EGF|1950|epidermal growth factor##AK126648|LRIT3|345193|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3##NM_198506|LRIT3|345193|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3##AM888273|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888274|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888275|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888276|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888277|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888278|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888279|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888280|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888281|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888282|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888283|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##NM_001977|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##BC094770|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##L12468|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##BX641012|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##L14721|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AK313412|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AK313987|PITX2|5308|paired-like homeodomain 2##AF048722|PITX2|5308|paired-like homeodomain 2##BC013998|PITX2|5308|paired-like homeodomain 2##NM_000325|PITX2|5308|paired-like homeodomain 2	0.998605	0.0	
chr12	31910044	31910207	reg1005704.p1	6.429	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-28069	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-28151	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-97511	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	35079	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	202206	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	202269	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.996445	0.0	
chr19	18439237	18439355	reg1005583.p1	6.429	+	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	-5330	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	-5409	-	TSC_hg19_v1_chr19_-_18392451 X56681	-46828	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	12111	+	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	57686	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	69124	-	AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##X56681|JUND|3727|jun D proto-oncogene##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25	0.0	0.381156	CTCF.p2:14:0.381
chr9	109521530	109521641	reg1000811.p2	6.429	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-1064667	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-1064732	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-1096828	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	103779	+	TSC_hg19_v1_chr9_+_109686439 CR749850	164884	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	523947	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.985861	0.0	
chr4	2854547	2854727	reg1001994.p2	6.428	+	TSC_hg19_v1_chr4_+_2845627 AH004561 S70310 BC013393 AK309186	-8971	+	TSC_hg19_v1_chr4_+_2845589 NM_001119 NM_014189 NM_014190 NM_176801	-9058	+	AB000462 AB000463 NM_003023	-34097	+	AK025413 TSC_hg19_v1_chr4_+_2883766	29064	+	CU677155 EU176393 EU176739 L11669 TSC_hg19_v1_chr4_-_2935840	81110	-	TSC_hg19_v1_chr4_-_2935854 NM_001120	81270	-	S70310|ADD1|118|adducin 1 (alpha)##BC013393|ADD1|118|adducin 1 (alpha)##AK309186|ADD1|118|adducin 1 (alpha)##NM_001119|ADD1|118|adducin 1 (alpha)##NM_014189|ADD1|118|adducin 1 (alpha)##NM_014190|ADD1|118|adducin 1 (alpha)##NM_176801|ADD1|118|adducin 1 (alpha)##AB000462|SH3BP2|6452|SH3-domain binding protein 2##AB000463|SH3BP2|6452|SH3-domain binding protein 2##NM_003023|SH3BP2|6452|SH3-domain binding protein 2##AK025413|ADD1|118|adducin 1 (alpha)##EU176393|MFSD10|10227|major facilitator superfamily domain containing 10##EU176739|MFSD10|10227|major facilitator superfamily domain containing 10##L11669|MFSD10|10227|major facilitator superfamily domain containing 10##NM_001120|MFSD10|10227|major facilitator superfamily domain containing 10	0.0	0.0	
chr3	179367526	179367628	reg1005136.p1	6.427	+	TSC_hg19_v1_chr3_+_179322594 NM_001199957 NM_001199958 NM_002492 BX648034 BC005271 BC009796 AK313822 AF047181 BC093071 BC017909 CU679497	-44984	+	AY212270 BC032522 TSC_hg19_v1_chr3_-_179322427 BC021575 NM_020409 NM_177988	-45155	-	AB061315 AK223212 TSC_hg19_v1_chr3_+_179280751 AK021756 AB015907 BC001391 AB590675 EU832285 EU832370 CR533529 CU674682	-86764	+	TSC_hg19_v1_chr3_+_179370901 NM_003940 U75362 BC016146 AK290338 AM393315 AM393392 AM393610 AM393780 DQ892472 DQ895684	3318	+	AB032593 NM_016559 AB032592 TSC_hg19_v1_chr3_-_179754937 AK299633 AK294501 AK314283 BC036183	387149	-	TSC_hg19_v1_chr3_+_180319985 NM_001042601 NM_133462 AK055984 AL832052 AL833086 BX648669 BC027990 AL833103 AY358762 AK074095 EU832789 GQ129409 CU693360	952426	+	NM_001199957|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_001199958|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_002492|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BX648034|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC005271|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC009796|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AK313822|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AF047181|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC093071|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC017909|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AY212270|MRPL47|57129|mitochondrial ribosomal protein L47##BC032522|MRPL47|57129|mitochondrial ribosomal protein L47##BC021575|MRPL47|57129|mitochondrial ribosomal protein L47##NM_020409|MRPL47|57129|mitochondrial ribosomal protein L47##NM_177988|MRPL47|57129|mitochondrial ribosomal protein L47##AB061315|ACTL6A|86|actin-like 6A##AK223212|ACTL6A|86|actin-like 6A##AK021756|ACTL6A|86|actin-like 6A##AB015907|ACTL6A|86|actin-like 6A##BC001391|ACTL6A|86|actin-like 6A##EU832285|ACTL6A|86|actin-like 6A##EU832370|ACTL6A|86|actin-like 6A##CR533529|ACTL6A|86|actin-like 6A##NM_003940|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##U75362|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##BC016146|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AK290338|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393315|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393392|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393610|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393780|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ892472|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ895684|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AB032593|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_016559|PEX5L|51555|peroxisomal biogenesis factor 5-like##AB032592|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK299633|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK294501|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK314283|PEX5L|51555|peroxisomal biogenesis factor 5-like##BC036183|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_001042601|TTC14|151613|tetratricopeptide repeat domain 14##NM_133462|TTC14|151613|tetratricopeptide repeat domain 14##AK055984|TTC14|151613|tetratricopeptide repeat domain 14##AL832052|TTC14|151613|tetratricopeptide repeat domain 14##AL833086|TTC14|151613|tetratricopeptide repeat domain 14##BX648669|TTC14|151613|tetratricopeptide repeat domain 14##BC027990|TTC14|151613|tetratricopeptide repeat domain 14##AL833103|TTC14|151613|tetratricopeptide repeat domain 14##AY358762|TTC14|151613|tetratricopeptide repeat domain 14##EU832789|TTC14|151613|tetratricopeptide repeat domain 14##GQ129409|TTC14|151613|tetratricopeptide repeat domain 14	1.9223	0.959747	CTCF.p2:-12:0.960	denovo_WM_7:46:0.542	denovo_WM_7:69:0.482	denovo_WM_7:70:0.482
chr6	90994420	90994586	reg1006605.p1	6.427	+	AB527151 AF296766 NM_032602	-390317	+	BC012574 TSC_hg19_v1_chr6_+_90539629 BC027850 AF154415 BC029386 BC132828 BC132830	-454804	+	TSC_hg19_v1_chr6_+_90539598 BC056685 NM_001137667 NM_001137668 NM_012115	-454909	+	AJ271878 TSC_hg19_v1_chr6_-_91006556 NM_021813	12008	-	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	12109	-	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	302180	-	AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa##BC012574|CASP8AP2|9994|caspase 8 associated protein 2##BC027850|CASP8AP2|9994|caspase 8 associated protein 2##AF154415|CASP8AP2|9994|caspase 8 associated protein 2##BC029386|CASP8AP2|9994|caspase 8 associated protein 2##BC132828|CASP8AP2|9994|caspase 8 associated protein 2##BC132830|CASP8AP2|9994|caspase 8 associated protein 2##BC056685|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137667|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137668|CASP8AP2|9994|caspase 8 associated protein 2##NM_012115|CASP8AP2|9994|caspase 8 associated protein 2##AJ271878|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_021813|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7	0.071287	0.0	
chr1	180997891	180998019	reg1006446.p2	6.426	+	TSC_hg19_v1_chr1_-_180992052 NM_005819	-5906	-	BC009944 TSC_hg19_v1_chr1_-_180992009 AK299063 AK312440	-5945	-	TSC_hg19_v1_chr1_+_180897572 BC000118	-100374	+	NM_001194999 NM_001195000 NM_001195035 NM_001531	4605	+	AK304645 AK290374 TSC_hg19_v1_chr1_+_181003128 AK222910	5146	+	AF010446 AJ249778 BC012485 U22963 TSC_hg19_v1_chr1_+_181003139	5184	+	NM_005819|STX6|10228|syntaxin 6##BC009944|STX6|10228|syntaxin 6##AK299063|STX6|10228|syntaxin 6##AK312440|STX6|10228|syntaxin 6##NM_001194999|MR1|3140|major histocompatibility complex, class I-related##NM_001195000|MR1|3140|major histocompatibility complex, class I-related##NM_001195035|MR1|3140|major histocompatibility complex, class I-related##NM_001531|MR1|3140|major histocompatibility complex, class I-related##AK304645|MR1|3140|major histocompatibility complex, class I-related##AK290374|MR1|3140|major histocompatibility complex, class I-related##AK222910|MR1|3140|major histocompatibility complex, class I-related##AF010446|MR1|3140|major histocompatibility complex, class I-related##AJ249778|MR1|3140|major histocompatibility complex, class I-related##BC012485|MR1|3140|major histocompatibility complex, class I-related##U22963|MR1|3140|major histocompatibility complex, class I-related	0.925287	0.0	denovo_WM_7:19:0.333	denovo_WM_7:21:0.329	denovo_WM_7:22:0.201
chr9	125707367	125707542	reg1006730.p1	6.426	+	AK131449 TSC_hg19_v1_chr9_+_125703299 BC020609 NM_012197 AK022408 BC054492 AF161357 AJ011679	-4226	+	BC018748 NM_020924 TSC_hg19_v1_chr9_-_125693788	-13668	-	X82018 AK292401 BC037282 NM_006626	-31865	-	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	88413	+	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	89391	+	TSC_hg19_v1_chr9_-_125874882 AK025814	167445	-	AK131449|RABGAP1|23637|RAB GTPase activating protein 1##BC020609|RABGAP1|23637|RAB GTPase activating protein 1##NM_012197|RABGAP1|23637|RAB GTPase activating protein 1##AK022408|RABGAP1|23637|RAB GTPase activating protein 1##BC054492|RABGAP1|23637|RAB GTPase activating protein 1##AF161357|RABGAP1|23637|RAB GTPase activating protein 1##AJ011679|RABGAP1|23637|RAB GTPase activating protein 1##BC018748|ZBTB26|57684|zinc finger and BTB domain containing 26##NM_020924|ZBTB26|57684|zinc finger and BTB domain containing 26##X82018|ZBTB6|10773|zinc finger and BTB domain containing 6##AK292401|ZBTB6|10773|zinc finger and BTB domain containing 6##BC037282|ZBTB6|10773|zinc finger and BTB domain containing 6##NM_006626|ZBTB6|10773|zinc finger and BTB domain containing 6##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)	0.999771	0.0	denovo_WM_7:-19:0.425	denovo_WM_7:-20:0.425
chr2	111604670	111604835	reg1006964.p1	6.425	+	AK300513 NM_001142807 BC022268	-114573	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-168930	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-169109	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	273735	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	1036874	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	1037009	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.774955	0.017692	denovo_WM_7:17:0.537
chr15	46590133	46590262	reg1007088.p1	6.424	+	TSC_hg19_v1_chr15_+_45927245 AK222463 AF042284 NM_021199 AF151802 AK313111 BC016836	-662948	+	TSC_hg19_v1_chr15_+_45879759 AK128626	-710424	+	TSC_hg19_v1_chr15_+_45879576 AK057545 BC004819 AK315581 AB527698	-710590	+	TSC_hg19_v1_chr15_+_47476294 AB040912 BC150253 NM_001198999	886190	+	TSC_hg19_v1_chr15_+_48009541 AK290032	1419391	+	AF389426 AF389427 AF389428 AF389429 AF389430 NM_020858 NM_024966 NM_153616 NM_153617 NM_153618 NM_153619	1420488	+	AK222463|SQRDL|58472|sulfide quinone reductase-like (yeast)##AF042284|SQRDL|58472|sulfide quinone reductase-like (yeast)##NM_021199|SQRDL|58472|sulfide quinone reductase-like (yeast)##AF151802|SQRDL|58472|sulfide quinone reductase-like (yeast)##AK313111|SQRDL|58472|sulfide quinone reductase-like (yeast)##BC016836|SQRDL|58472|sulfide quinone reductase-like (yeast)##AK128626|PLDN|26258|pallidin homolog (mouse)##AK057545|PLDN|26258|pallidin homolog (mouse)##BC004819|PLDN|26258|pallidin homolog (mouse)##AK315581|PLDN|26258|pallidin homolog (mouse)##AB040912|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##BC150253|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_001198999|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##AK290032|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##AF389426|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##AF389427|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##AF389428|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##AF389429|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##AF389430|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_020858|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_024966|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_153616|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_153617|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_153618|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D##NM_153619|SEMA6D|80031|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	0.0	0.0	
chr15	64851049	64851229	reg1003122.p2	6.424	+	NM_015042	-59521	+	TSC_hg19_v1_chr15_+_64752786 BC142647	-98280	+	NM_016213 TSC_hg19_v1_chr15_+_64680041 BC012448 AK314319 AB464298 EU446746	-171103	+	AB056456 TSC_hg19_v1_chr15_+_64885153	34014	+	BC119629 BC119630 BC148316 BC127630 TSC_hg19_v1_chr15_-_64995360 BC127631 AF242520 AF242521	144221	-	TSC_hg19_v1_chr15_-_64995415 AF057297 BC063577 BC073877 BC035493 BC092483	144263	-	NM_015042|ZNF609|23060|zinc finger protein 609##BC142647|ZNF609|23060|zinc finger protein 609##NM_016213|TRIP4|9325|thyroid hormone receptor interactor 4##BC012448|TRIP4|9325|thyroid hormone receptor interactor 4##AK314319|TRIP4|9325|thyroid hormone receptor interactor 4##EU446746|TRIP4|9325|thyroid hormone receptor interactor 4##BC119629|OAZ2|4947|ornithine decarboxylase antizyme 2##BC119630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC148316|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127631|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242520|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242521|OAZ2|4947|ornithine decarboxylase antizyme 2##AF057297|OAZ2|4947|ornithine decarboxylase antizyme 2##BC063577|OAZ2|4947|ornithine decarboxylase antizyme 2##BC073877|OAZ2|4947|ornithine decarboxylase antizyme 2##BC035493|OAZ2|4947|ornithine decarboxylase antizyme 2##BC092483|OAZ2|4947|ornithine decarboxylase antizyme 2	0.994099	0.0	denovo_WM_7:-45:0.817
chr1	205202085	205202248	reg1006625.p1	6.423	+	AK293734 NM_001242925	-4108	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-5083	+	TSC_hg19_v1_chr1_-_205180700 AY429674 BC060870 NM_015375 NM_199462	-21447	-	AY358192 TSC_hg19_v1_chr1_+_205236667	34468	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	88677	-	BC036076 TSC_hg19_v1_chr1_-_205313311	111144	-	AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AY429674|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC060870|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_015375|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_199462|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A	2.687091	0.0	denovo_WM_7:-34:0.480	denovo_WM_7:-35:0.480	denovo_WM_7:-76:0.237	denovo_WM_7:-94:0.218	denovo_WM_7:-95:0.267
chr17	72439012	72439175	reg1007329.p1	6.423	+	AJ276102 NM_018653	-9258	+	AK075397 AF207989 AK222909 TSC_hg19_v1_chr17_+_72428254 AK000249	-10838	+	BC110848 BC004925 BC069202 NM_022036 BC125080 BC125081	-11489	+	TSC_hg19_v1_chr17_+_72439191 AK126429	112	+	NM_007261 AJ224864 BC032352	23445	+	AF020314 TSC_hg19_v1_chr17_+_72462772	23677	+	AJ276102|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##NM_018653|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK075397|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AF207989|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK222909|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK000249|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC110848|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC004925|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC069202|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##NM_022036|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC125080|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##BC125081|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##AK126429|GPRC5C|55890|G protein-coupled receptor, family C, group 5, member C##NM_007261|CD300A|11314|CD300a molecule##AJ224864|CD300A|11314|CD300a molecule##BC032352|CD300A|11314|CD300a molecule##AF020314|CD300A|11314|CD300a molecule	0.980657	0.0	denovo_WM_7:22:0.928
chr19	10358870	10359050	reg1003531.p2	6.423	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-16954	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-53233	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-53355	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	3687	+	TSC_hg19_v1_chr19_+_10362889 BC009858	3938	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	4032	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.34537	0.0	denovo_WM_7:-97:0.229
chr6	71248176	71248316	reg1005576.p2	6.423	+	NM_001162529 AB037832	-112089	+	TSC_hg19_v1_chr6_+_71123224 CR749254 BC131782	-125032	+	TSC_hg19_v1_chr6_+_71123122 NM_001105531 NM_020819	-125133	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	28379	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	129277	+	TSC_hg19_v1_chr6_+_71377620 AK315579 BC028074 BC008672 AK303387 BC036123 AK023221 AY055003 AY055004 AK222711 AK290448 CU688386	129409	+	NM_001162529|FAM135A|57579|family with sequence similarity 135, member A##AB037832|FAM135A|57579|family with sequence similarity 135, member A##CR749254|FAM135A|57579|family with sequence similarity 135, member A##BC131782|FAM135A|57579|family with sequence similarity 135, member A##NM_001105531|FAM135A|57579|family with sequence similarity 135, member A##NM_020819|FAM135A|57579|family with sequence similarity 135, member A##BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1##AK315579|SMAP1|60682|small ArfGAP 1##BC028074|SMAP1|60682|small ArfGAP 1##BC008672|SMAP1|60682|small ArfGAP 1##AK303387|SMAP1|60682|small ArfGAP 1##BC036123|SMAP1|60682|small ArfGAP 1##AK023221|SMAP1|60682|small ArfGAP 1##AY055003|SMAP1|60682|small ArfGAP 1##AY055004|SMAP1|60682|small ArfGAP 1##AK222711|SMAP1|60682|small ArfGAP 1##AK290448|SMAP1|60682|small ArfGAP 1	0.0	0.0	
chr14	68938148	68938328	reg1000430.p1	6.422	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-651718	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-654939	-	AK315462 NM_152443	-769636	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	321482	-	NM_001244698 NM_004926	322392	-	NM_001244701 AB528867	324746	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr19	17493653	17493833	reg1005881.p1	6.422	+	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	-5611	-	NM_001128855 NM_032620 NM_133644 AF360742 AF360743 AY078987 AY078988 AK298485 AK027606 AK291929 BC019261 TSC_hg19_v1_chr19_+_17448396 BC017207 AK311442 AF360744 DQ892217 DQ895413 CU676414 CU677863	-45371	+	NM_001195422 AK297953	-47944	+	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	22676	-	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	22823	+	TSC_hg19_v1_chr19_+_17530855 AK057057 AK289487	37105	+	AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##NM_001128855|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_032620|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_133644|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360742|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360743|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078987|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078988|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK298485|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK027606|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK291929|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC019261|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC017207|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK311442|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360744|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ892217|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ895413|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_001195422|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK297953|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535##AK057057|FAM125A|93343|family with sequence similarity 125, member A##AK289487|FAM125A|93343|family with sequence similarity 125, member A	0.983205	0.0	denovo_WM_7:-5:0.347	denovo_WM_7:-6:0.537	denovo_WM_7:-107:0.462
chr4	140392547	140392680	reg1004207.p1	6.422	+	AL136904 NM_031296	-17653	+	TSC_hg19_v1_chr4_-_140374867 AK097885	-17739	-	TSC_hg19_v1_chr4_-_140223626 AK023115 NM_001184987 NM_001184988 NM_001184989 NM_001184990	-168956	-	AF462150 TSC_hg19_v1_chr4_-_140477374 AB385499 BC066361 AK310856 BC121055 BC121056 AB051504 AF448510 NM_030648	84820	-	NM_001204366 NM_001204367 NM_001204368 NM_002413 TSC_hg19_v1_chr4_+_140587003 AK130948 BC025416	194377	+	AK307231 TSC_hg19_v1_chr4_+_140587164 U77604 CR407640 DQ893384 DQ896704	194521	+	AL136904|RAB33B|83452|RAB33B, member RAS oncogene family##NM_031296|RAB33B|83452|RAB33B, member RAS oncogene family##AK023115|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184987|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184988|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184989|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184990|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AF462150|SETD7|80854|SET domain containing (lysine methyltransferase) 7##BC066361|SETD7|80854|SET domain containing (lysine methyltransferase) 7##AK310856|SETD7|80854|SET domain containing (lysine methyltransferase) 7##BC121055|SETD7|80854|SET domain containing (lysine methyltransferase) 7##BC121056|SETD7|80854|SET domain containing (lysine methyltransferase) 7##AB051504|SETD7|80854|SET domain containing (lysine methyltransferase) 7##AF448510|SETD7|80854|SET domain containing (lysine methyltransferase) 7##NM_030648|SETD7|80854|SET domain containing (lysine methyltransferase) 7##NM_001204366|MGST2|4258|microsomal glutathione S-transferase 2##NM_001204367|MGST2|4258|microsomal glutathione S-transferase 2##NM_001204368|MGST2|4258|microsomal glutathione S-transferase 2##NM_002413|MGST2|4258|microsomal glutathione S-transferase 2##AK130948|MGST2|4258|microsomal glutathione S-transferase 2##BC025416|MGST2|4258|microsomal glutathione S-transferase 2##AK307231|MGST2|4258|microsomal glutathione S-transferase 2##U77604|MGST2|4258|microsomal glutathione S-transferase 2##CR407640|MGST2|4258|microsomal glutathione S-transferase 2##DQ893384|MGST2|4258|microsomal glutathione S-transferase 2##DQ896704|MGST2|4258|microsomal glutathione S-transferase 2	0.996267	0.0	denovo_WM_7:70:0.245	denovo_WM_7:71:0.245	denovo_WM_7:72:0.245	denovo_WM_7:73:0.245
chrX	69556681	69556816	reg1006642.p1	6.422	+	NM_012310 AK313133 BC003664 BC038459 AF071592 BC049218 AB208797 BC050548 BC011801	-46817	+	TSC_hg19_v1_chrX_-_69509768 BC012996 AY358829 AK024746 AK311539 AF151061 NM_016484 BX537725	-46956	-	BC117239 BC143888 NM_001032726	-54727	+	NM_001171191 NM_001171192 NM_001171193 NM_017711 AB048363 AK299255 AK310090 AK301025 AK316035 AK000214 AK307778 BC032009 AY358986	86284	+	AB209328 NM_021120 AK315041 U49089	108013	+	TSC_hg19_v1_chrX_+_69672143 AB033058 NM_020730	115427	+	NM_012310|KIF4A|24137|kinesin family member 4A##AK313133|KIF4A|24137|kinesin family member 4A##BC003664|KIF4A|24137|kinesin family member 4A##BC038459|KIF4A|24137|kinesin family member 4A##AF071592|KIF4A|24137|kinesin family member 4A##BC049218|KIF4A|24137|kinesin family member 4A##AB208797|KIF4A|24137|kinesin family member 4A##BC050548|KIF4A|24137|kinesin family member 4A##BC011801|KIF4A|24137|kinesin family member 4A##BC012996|PDZD11|51248|PDZ domain containing 11##AY358829|PDZD11|51248|PDZ domain containing 11##AK024746|PDZD11|51248|PDZ domain containing 11##AK311539|PDZD11|51248|PDZ domain containing 11##AF151061|PDZD11|51248|PDZ domain containing 11##NM_016484|PDZD11|51248|PDZ domain containing 11##BX537725|PDZD11|51248|PDZ domain containing 11##BC117239|RAB41|347517|RAB41, member RAS oncogene family##BC143888|RAB41|347517|RAB41, member RAS oncogene family##NM_001032726|RAB41|347517|RAB41, member RAS oncogene family##NM_001171191|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_001171192|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_001171193|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_017711|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AB048363|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK299255|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK310090|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK301025|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK316035|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK000214|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK307778|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##BC032009|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AY358986|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AB209328|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_021120|DLG3|1741|discs, large homolog 3 (Drosophila)##AK315041|DLG3|1741|discs, large homolog 3 (Drosophila)##U49089|DLG3|1741|discs, large homolog 3 (Drosophila)##AB033058|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_020730|DLG3|1741|discs, large homolog 3 (Drosophila)	0.0	0.0	
chr10	11206558	11206705	reg1008187.p1	6.420	+	U69546 TSC_hg19_v1_chr10_+_11060121	-146515	+	AF090694 TSC_hg19_v1_chr10_+_11060072	-146560	+	TSC_hg19_v1_chr10_+_11059882 AK314087 NM_006561 BC036391	-146741	+	AK299983 NM_001025076 NM_001083591 TSC_hg19_v1_chr10_+_11207008	338	+	AK297313 TSC_hg19_v1_chr10_+_11207057 AK299992 AF036956 AK293164 AF432906	465	+	TSC_hg19_v1_chr10_+_11207244 AK316354	614	+	U69546|CELF2|10659|CUGBP, Elav-like family member 2##AF090694|CELF2|10659|CUGBP, Elav-like family member 2##AK314087|CELF2|10659|CUGBP, Elav-like family member 2##NM_006561|CELF2|10659|CUGBP, Elav-like family member 2##BC036391|CELF2|10659|CUGBP, Elav-like family member 2##AK299983|CELF2|10659|CUGBP, Elav-like family member 2##NM_001025076|CELF2|10659|CUGBP, Elav-like family member 2##NM_001083591|CELF2|10659|CUGBP, Elav-like family member 2##AK297313|CELF2|10659|CUGBP, Elav-like family member 2##AK299992|CELF2|10659|CUGBP, Elav-like family member 2##AF036956|CELF2|10659|CUGBP, Elav-like family member 2##AK293164|CELF2|10659|CUGBP, Elav-like family member 2##AF432906|CELF2|10659|CUGBP, Elav-like family member 2##AK316354|CELF2|10659|CUGBP, Elav-like family member 2	0.999644	0.0	denovo_WM_7:3:0.425	denovo_WM_7:4:0.425
chr13	80547674	80547801	reg1006039.p2	6.420	+	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-492182	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	-492315	+	TSC_hg19_v1_chr13_+_80055257 NM_001161407 NM_019080 AB097019 AB097028 AB097029	-492466	+	BC004205 TSC_hg19_v1_chr13_-_80913114	365305	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	367327	-	TSC_hg19_v1_chr13_-_84456424 BC051738	3908688	-	AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##NM_001161407|NDFIP2|54602|Nedd4 family interacting protein 2##NM_019080|NDFIP2|54602|Nedd4 family interacting protein 2##AB097019|NDFIP2|54602|Nedd4 family interacting protein 2##AB097028|NDFIP2|54602|Nedd4 family interacting protein 2##AB097029|NDFIP2|54602|Nedd4 family interacting protein 2##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1	0.998013	0.164049	denovo_WM_7:-22:0.852
chr14	89831965	89832117	reg1006842.p2	6.420	+	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-541048	+	BC150639 NM_183387 BC032685 TSC_hg19_v1_chr14_-_89259288	-572831	-	NM_207662 BC027607 AF474376	-771288	+	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	46735	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	51369	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	253554	-	AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##BC150639|EML5|161436|echinoderm microtubule associated protein like 5##NM_183387|EML5|161436|echinoderm microtubule associated protein like 5##BC032685|EML5|161436|echinoderm microtubule associated protein like 5##NM_207662|ZC3H14|79882|zinc finger CCCH-type containing 14##BC027607|ZC3H14|79882|zinc finger CCCH-type containing 14##AF474376|ZC3H14|79882|zinc finger CCCH-type containing 14##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3	0.0	0.0	
chr17	73397534	73397646	reg1005156.p1	6.420	+	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	-7813	-	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-112061	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-112118	-	AK091010 TSC_hg19_v1_chr17_-_73401721	4054	-	TSC_hg19_v1_chr17_-_73401738 BC000631	4144	-	TSC_hg19_v1_chr17_-_73401781 AK315565	4189	-	AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2	0.998839	0.0	
chr22	31932973	31933128	reg1007450.p1	6.420	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	-40504	+	BC129926 BC129945 TSC_hg19_v1_chr22_+_31892499 AK303362 AK293987	-40609	+	TSC_hg19_v1_chr22_+_31892148 AB011114 NM_001007467 NM_014775	-40878	+	BC033613 TSC_hg19_v1_chr22_+_32010180	77116	+	TSC_hg19_v1_chr22_-_32026821 BC001482 NM_014338	93782	-	TSC_hg19_v1_chr22_-_32058202 AB528208 CU013140 CU013428 CR456540 DQ656048	125158	-	BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC129926|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC129945|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK303362|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK293987|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AB011114|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##NM_001007467|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##NM_014775|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC033613|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC001482|PISD|23761|phosphatidylserine decarboxylase##NM_014338|PISD|23761|phosphatidylserine decarboxylase##CU013140|PISD|23761|phosphatidylserine decarboxylase##CU013428|PISD|23761|phosphatidylserine decarboxylase##CR456540|PISD|23761|phosphatidylserine decarboxylase	0.412	0.0	denovo_WM_7:-15:0.278
chr5	180260419	180260561	reg1006852.p2	6.420	+	TSC_hg19_v1_chr5_+_180258018 BC047586	-2485	+	TSC_hg19_v1_chr5_+_180257959 AK308536	-2538	+	AK057194 AK124428 TSC_hg19_v1_chr5_-_180242542	-17948	-	AK295714 TSC_hg19_v1_chr5_-_180288277 AK303450 BC029573 AK091376 AX746945 NM_001172638 NM_152283	27801	-	NM_001040462 NM_001159707 NM_001159708 NM_001159709 NM_024850 AK296597 AY358523 AK025111 AK225213 BC119696 BC119697	65684	+	AK298687 NM_001159710 AK309639 AK308012	76080	+	BC047586|LOC729678|729678|uncharacterized LOC729678##AK057194|MGAT1|4245|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK295714|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK303450|ZFP62|643836|zinc finger protein 62 homolog (mouse)##BC029573|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK091376|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001172638|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_152283|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001040462|BTNL8|79908|butyrophilin-like 8##NM_001159707|BTNL8|79908|butyrophilin-like 8##NM_001159708|BTNL8|79908|butyrophilin-like 8##NM_001159709|BTNL8|79908|butyrophilin-like 8##NM_024850|BTNL8|79908|butyrophilin-like 8##AK296597|BTNL8|79908|butyrophilin-like 8##AY358523|BTNL8|79908|butyrophilin-like 8##AK025111|BTNL8|79908|butyrophilin-like 8##AK225213|BTNL8|79908|butyrophilin-like 8##BC119696|BTNL8|79908|butyrophilin-like 8##BC119697|BTNL8|79908|butyrophilin-like 8##AK298687|BTNL8|79908|butyrophilin-like 8##NM_001159710|BTNL8|79908|butyrophilin-like 8##AK309639|BTNL8|79908|butyrophilin-like 8##AK308012|BTNL8|79908|butyrophilin-like 8	0.992478	0.0	
chr11	128528562	128528661	reg1010964.p1	6.417	+	BX640634 NM_001143820	-71159	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-136477	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-136648	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	35187	+	TSC_hg19_v1_chr11_+_128563966 AK313370	35350	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	35369	+	BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1	0.99856	0.0	denovo_WM_7:11:0.494	denovo_WM_7:12:0.494
chr15	77536238	77536379	reg1005085.p1	6.417	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-63580	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-172764	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-172825	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	176235	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	176723	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	176954	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	0.962025	0.0	denovo_WM_7:13:0.361	denovo_WM_7:14:0.405
chr17	7253830	7253963	reg1006977.p2	6.417	+	NM_014716 TSC_hg19_v1_chr17_+_7239850 D30758 BC018543	-14037	+	TSC_hg19_v1_chr17_-_7232655 AL136870 AB058690 NM_001005408 NM_032442 AL833570	-21209	-	TSC_hg19_v1_chr17_-_7218697 AK301877 U28963 BC107738 BC103901 BC103902 BC103903	-35123	-	BC103744 NM_001002914	1311	+	TSC_hg19_v1_chr17_+_7255480 AK056227 AY646650	1646	+	BC040900 AY358218 BC107110 NM_198154	4579	+	NM_014716|ACAP1|9744|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1##D30758|ACAP1|9744|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1##BC018543|ACAP1|9744|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1##AL136870|NEURL4|84461|neuralized homolog 4 (Drosophila)##AB058690|NEURL4|84461|neuralized homolog 4 (Drosophila)##NM_001005408|NEURL4|84461|neuralized homolog 4 (Drosophila)##NM_032442|NEURL4|84461|neuralized homolog 4 (Drosophila)##AL833570|NEURL4|84461|neuralized homolog 4 (Drosophila)##AK301877|GPS2|2874|G protein pathway suppressor 2##U28963|GPS2|2874|G protein pathway suppressor 2##BC107738|GPS2|2874|G protein pathway suppressor 2##BC103901|GPS2|2874|G protein pathway suppressor 2##BC103902|GPS2|2874|G protein pathway suppressor 2##BC103903|GPS2|2874|G protein pathway suppressor 2##BC103744|KCTD11|147040|potassium channel tetramerisation domain containing 11##NM_001002914|KCTD11|147040|potassium channel tetramerisation domain containing 11##AK056227|KCTD11|147040|potassium channel tetramerisation domain containing 11##AY646650|KCTD11|147040|potassium channel tetramerisation domain containing 11##BC040900|TMEM95|339168|transmembrane protein 95##AY358218|TMEM95|339168|transmembrane protein 95##BC107110|TMEM95|339168|transmembrane protein 95##NM_198154|TMEM95|339168|transmembrane protein 95	0.997654	0.0	denovo_WM_7:41:0.817
chr3	190862465	190862602	reg1006804.p1	6.417	+	NM_001146686	-282069	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	-630656	+	CU687168 BC071780 AY358607 NM_207316	-694903	-	AY398681 AY573933 BC128106 BC128107 NM_198184	67788	+	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	184633	+	AK090630 AX746546 NM_198152	185791	-	NM_001146686|GMNC|647309|geminin coiled-coil domain containing##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##BC071780|TMEM207|131920|transmembrane protein 207##AY358607|TMEM207|131920|transmembrane protein 207##NM_207316|TMEM207|131920|transmembrane protein 207##AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing	0.995711	0.0	
chr3	105517496	105517648	reg1006889.p1	6.416	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-96518	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-431750	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-431992	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	70235	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1441907	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1442020	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.0	0.0	
chr8	68071603	68071769	reg1007146.p2	6.416	+	TSC_hg19_v1_chr8_+_67976626 AM156947 BX649147 NM_024790 BC029445 AK096205 AB527449 AK127108	-95050	+	TSC_hg19_v1_chr8_-_67974551 NM_006837 BX648542	-97127	-	TSC_hg19_v1_chr8_-_67974369 BC007272 BC001859 U70734 U65928 AK310434 AK311071 BC001187 AK056967	-97333	-	NM_006421 TSC_hg19_v1_chr8_-_68256017	184279	-	BC030256 TSC_hg19_v1_chr8_+_68256207	184469	+	AF221594 AY044833 BC033684 NM_020361	586912	-	AM156947|CSPP1|79848|centrosome and spindle pole associated protein 1##BX649147|CSPP1|79848|centrosome and spindle pole associated protein 1##NM_024790|CSPP1|79848|centrosome and spindle pole associated protein 1##BC029445|CSPP1|79848|centrosome and spindle pole associated protein 1##AK096205|CSPP1|79848|centrosome and spindle pole associated protein 1##AK127108|CSPP1|79848|centrosome and spindle pole associated protein 1##NM_006837|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##BX648542|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##BC007272|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##BC001859|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##U70734|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##U65928|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##AK310434|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##AK311071|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##BC001187|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##AK056967|COPS5|10987|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)##NM_006421|ARFGEF1|10565|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)##AF221594|CPA6|57094|carboxypeptidase A6##AY044833|CPA6|57094|carboxypeptidase A6##BC033684|CPA6|57094|carboxypeptidase A6##NM_020361|CPA6|57094|carboxypeptidase A6	1.982149	0.0	denovo_WM_7:64:0.268	denovo_WM_7:65:0.694	denovo_WM_7:80:0.834
chr3	72587778	72587947	reg1006160.p1	6.415	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-753591	-	AK313656 NM_173359	-783939	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-784340	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	309686	-	BC017274 TSC_hg19_v1_chr3_-_72897575	309713	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	309730	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	1.937011	0.0	denovo_WM_7:11:0.479	denovo_WM_7:12:0.427	denovo_WM_7:65:0.739
chr6	108199236	108199372	reg1006646.p1	6.415	+	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	-53788	-	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	-387876	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	-418574	-	AF100141 CU690382 CU690568 BC001153 TSC_hg19_v1_chr6_-_108279282 AK074835	79953	-	TSC_hg19_v1_chr6_-_108279316 AJ011779	80008	-	TSC_hg19_v1_chr6_-_108279346 BC048287 AK001465 BC047221	80029	-	AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AF100141|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC001153|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK074835|SEC63|11231|SEC63 homolog (S. cerevisiae)##AJ011779|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC048287|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK001465|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC047221|SEC63|11231|SEC63 homolog (S. cerevisiae)	0.0	0.0	
chr19	2019495	2019654	reg1003096.p1	6.414	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	-3904	-	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	-78386	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	-78411	+	AL137615 TSC_hg19_v1_chr19_-_2039474 AK024347 AK097012	19927	-	TSC_hg19_v1_chr19_-_2041865 AK092536	22322	-	TSC_hg19_v1_chr19_-_2042036 AK001730	22476	-	AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##AL137615|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK024347|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK097012|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK092536|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2	1.998515	0.0	denovo_WM_7:51:0.310	denovo_WM_7:52:0.248	denovo_WM_7:69:0.259	denovo_WM_7:70:0.321
chr2	68606604	68606749	reg1005529.p2	6.414	+	TSC_hg19_v1_chr2_+_68592449 DQ893586 DQ894896 CU676266 AB528939 CR542056 CR542079	-14219	+	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	-14304	+	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	-59576	-	BC089423 DQ904332 NM_001024680 TSC_hg19_v1_chr2_-_68694427	87734	-	TSC_hg19_v1_chr2_+_68694716 AK290841 NM_173545 AK308186 BC041144 CU691972	88088	+	AB084080 AF506287 AY089976 BC100960 EF577399 NM_138964	266277	+	DQ893586|PLEK|5341|pleckstrin##DQ894896|PLEK|5341|pleckstrin##CR542056|PLEK|5341|pleckstrin##CR542079|PLEK|5341|pleckstrin##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##BC089423|FBXO48|554251|F-box protein 48##DQ904332|FBXO48|554251|F-box protein 48##NM_001024680|FBXO48|554251|F-box protein 48##AK290841|APLF|200558|aprataxin and PNKP like factor##NM_173545|APLF|200558|aprataxin and PNKP like factor##AK308186|APLF|200558|aprataxin and PNKP like factor##BC041144|APLF|200558|aprataxin and PNKP like factor##AB084080|PROKR1|10887|prokineticin receptor 1##AF506287|PROKR1|10887|prokineticin receptor 1##AY089976|PROKR1|10887|prokineticin receptor 1##BC100960|PROKR1|10887|prokineticin receptor 1##EF577399|PROKR1|10887|prokineticin receptor 1##NM_138964|PROKR1|10887|prokineticin receptor 1	0.072295	0.0	
chr7	6296696	6296839	reg1006152.p2	6.414	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-152169	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-152224	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-197920	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	15464	-	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	91743	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	117460	+	AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.0	0.0	
chr8	57013444	57013575	reg1006448.p1	6.414	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	-26423	-	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-220989	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-221114	+	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	13031	-	TSC_hg19_v1_chr8_-_57123833 U65002	110326	-	AK296933 AK313663 NM_001114634 NM_001114635 NM_002655 TSC_hg19_v1_chr8_-_57123860	110352	-	BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1##AK296933|PLAG1|5324|pleiomorphic adenoma gene 1##AK313663|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114634|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114635|PLAG1|5324|pleiomorphic adenoma gene 1##NM_002655|PLAG1|5324|pleiomorphic adenoma gene 1	0.994968	0.0	
chr12	76328118	76328292	reg1000103.p1	6.413	+	BC005225 TSC_hg19_v1_chr12_-_75905414 NM_007043	-422786	-	BC033887 TSC_hg19_v1_chr12_-_75905393 BC014034 BC026107	-422810	-	AK022133 TSC_hg19_v1_chr12_-_75905382 BC016778 U55766	-422820	-	AF220656 TSC_hg19_v1_chr12_-_76424608	96342	-	TSC_hg19_v1_chr12_-_76425369 BC126425 BC130427 BC110820 U92983 BC018929	97085	-	TSC_hg19_v1_chr12_-_76425376 AK304224 AB587598 NM_007350 Z50194	97322	-	BC005225|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##NM_007043|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC033887|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC014034|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC026107|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AK022133|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC016778|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##U55766|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AF220656|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC126425|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC130427|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC110820|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##U92983|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC018929|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##AK304224|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##NM_007350|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##Z50194|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1	1.979512	0.0	denovo_WM_7:-68:0.949	denovo_WM_7:-83:0.319	denovo_WM_7:-84:0.331	denovo_WM_7:-85:0.343
chr15	75387616	75387765	reg1006898.p1	6.413	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-71709	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-71762	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-99783	+	AK128205 TSC_hg19_v1_chr15_+_75491259	103556	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	106522	+	BC110367 TSC_hg19_v1_chr15_+_75494233	106543	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.0	0.0	
chr3	187455530	187455668	reg1004783.p1	6.413	+	S67779 NM_001130845	-1334	-	EU139066 NM_001134738	-2918	-	BC068081 NM_001004312	-35255	-	BC142705 BC150184 Z21943 AK304325 AK308162 TSC_hg19_v1_chr3_-_187463257 BC146796	7645	-	U00115 NM_001706	7894	-	AL833171 TSC_hg19_v1_chr3_+_187870843	415228	+	S67779|BCL6|604|B-cell CLL/lymphoma 6##NM_001130845|BCL6|604|B-cell CLL/lymphoma 6##EU139066|BCL6|604|B-cell CLL/lymphoma 6##NM_001134738|BCL6|604|B-cell CLL/lymphoma 6##BC068081|RTP2|344892|receptor (chemosensory) transporter protein 2##NM_001004312|RTP2|344892|receptor (chemosensory) transporter protein 2##BC142705|BCL6|604|B-cell CLL/lymphoma 6##BC150184|BCL6|604|B-cell CLL/lymphoma 6##Z21943|BCL6|604|B-cell CLL/lymphoma 6##AK304325|BCL6|604|B-cell CLL/lymphoma 6##AK308162|BCL6|604|B-cell CLL/lymphoma 6##BC146796|BCL6|604|B-cell CLL/lymphoma 6##U00115|BCL6|604|B-cell CLL/lymphoma 6##NM_001706|BCL6|604|B-cell CLL/lymphoma 6##AL833171|LPP|4026|LIM domain containing preferred translocation partner in lipoma	0.991204	0.0	
chr5	156884929	156885042	reg1006376.p1	6.413	+	TSC_hg19_v1_chr5_+_156820161 AK172724	-64797	+	AK289701 BC022570 NM_001001343	-112285	-	BC011762 BC021008 NM_014376	-188629	+	AK296972 NM_001099287 NM_001172292	2041	+	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	2285	+	AB462931 TSC_hg19_v1_chr5_-_157002728	117731	-	AK172724|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK289701|FNDC9|408263|fibronectin type III domain containing 9##BC022570|FNDC9|408263|fibronectin type III domain containing 9##NM_001001343|FNDC9|408263|fibronectin type III domain containing 9##BC011762|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##BC021008|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_014376|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK296972|NIPAL4|348938|NIPA-like domain containing 4##NM_001099287|NIPAL4|348938|NIPA-like domain containing 4##NM_001172292|NIPAL4|348938|NIPA-like domain containing 4##AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4	0.999596	0.0	
chr10	47247757	47247897	reg1005929.p1	6.412	+	BC171820 BC171845 BC171847 NM_001190810	-34202	-	BC146955 BC146968 BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556	-66143	-	AB590156 CU687256 DQ893430 DQ896775 M81844 AK296573 AK300139 AK300158 BC021910 BC004376 NM_001098845 AK296976 Z36830 BC073755 NM_001040084 AK298761	-73808	-	NM_001630 BC008813 BC073755 AK096715 AK313626 X16662 BC029890 AK300191 AK223149 AK307182 CU679125 CU687256	499188	+	NM_018232	646195	+	BC171820 BC171845 BC171847 NM_001190810	967896	+	BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##DQ893430|ANXA8L2|244|annexin A8-like 2##DQ896775|ANXA8|653145|annexin A8##M81844|ANXA8|653145|annexin A8##AK296573|ANXA8|653145|annexin A8##AK300139|ANXA8|653145|annexin A8##AK300158|ANXA8|653145|annexin A8##BC004376|ANXA8|653145|annexin A8##NM_001098845|ANXA8L1|728113|annexin A8-like 1##Z36830|ANXA8|653145|annexin A8##BC073755|ANXA8|653145|annexin A8##NM_001040084|ANXA8|653145|annexin A8##AK298761|ANXA8|653145|annexin A8##NM_001630|ANXA8L2|244|annexin A8-like 2##BC008813|ANXA8L2|244|annexin A8-like 2##BC073755|ANXA8|653145|annexin A8##AK313626|ANXA8L2|244|annexin A8-like 2##X16662|ANXA8L2|244|annexin A8-like 2##AK300191|ANXA8L2|244|annexin A8-like 2##AK223149|ANXA8L2|244|annexin A8-like 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9	0.484486	0.0	denovo_WM_7:-48:0.302
chr14	45715953	45716103	reg1007680.p1	6.412	+	TSC_hg19_v1_chr14_+_45605166 DQ140356 BC140776 BC144511 CU690276	-110839	+	AK093422 AX748116 TSC_hg19_v1_chr14_+_45605142	-110886	+	TSC_hg19_v1_chr14_+_45605134 NM_020937 BC036056	-110903	+	TSC_hg19_v1_chr14_-_45722374 BC051885 BC065544 AK002048	6339	-	AB067490 NM_018353 TSC_hg19_v1_chr14_-_45722681	6618	-	AM392934 AB528225 AB063608 BC066312 AK130863 BC014310 NM_080746	1404955	-	DQ140356|FANCM|57697|Fanconi anemia, complementation group M##BC140776|FANCM|57697|Fanconi anemia, complementation group M##BC144511|FANCM|57697|Fanconi anemia, complementation group M##AK093422|FANCM|57697|Fanconi anemia, complementation group M##NM_020937|FANCM|57697|Fanconi anemia, complementation group M##BC036056|FANCM|57697|Fanconi anemia, complementation group M##BC051885|MIS18BP1|55320|MIS18 binding protein 1##BC065544|MIS18BP1|55320|MIS18 binding protein 1##AK002048|MIS18BP1|55320|MIS18 binding protein 1##AB067490|MIS18BP1|55320|MIS18 binding protein 1##NM_018353|MIS18BP1|55320|MIS18 binding protein 1##AM392934|RPL10L|140801|ribosomal protein L10-like##AB063608|RPL10L|140801|ribosomal protein L10-like##BC066312|RPL10L|140801|ribosomal protein L10-like##AK130863|RPL10L|140801|ribosomal protein L10-like##BC014310|RPL10L|140801|ribosomal protein L10-like##NM_080746|RPL10L|140801|ribosomal protein L10-like	0.035174	0.0	
chr19	16705477	16705623	reg1006442.p2	6.412	+	TSC_hg19_v1_chr19_+_16683381 AK094229	-22153	+	TSC_hg19_v1_chr19_-_16683205 BC062562 NM_024881	-22354	-	TSC_hg19_v1_chr19_-_16653256 NM_006387	-52287	-	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	33450	-	TSC_hg19_v1_chr19_-_16770944 AK025602 BC069279 BX648276	65379	-	TSC_hg19_v1_chr19_-_16770956 NM_024104	65412	-	BC062562|SLC35E1|79939|solute carrier family 35, member E1##NM_024881|SLC35E1|79939|solute carrier family 35, member E1##NM_006387|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26##AK025602|C19orf42|79086|chromosome 19 open reading frame 42##BC069279|C19orf42|79086|chromosome 19 open reading frame 42##BX648276|C19orf42|79086|chromosome 19 open reading frame 42##NM_024104|C19orf42|79086|chromosome 19 open reading frame 42	0.0	0.0	
chr5	145585852	145585976	reg1005827.p1	6.412	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	-2748	+	AK128738 TSC_hg19_v1_chr5_+_145583122	-2797	+	TSC_hg19_v1_chr5_-_145562236 NM_020117	-23650	-	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	132716	+	TSC_hg19_v1_chr5_+_145826895 NM_001040006 NM_006706 AK304319 BC006109 BC014151 BC062351 AK126455 BC111727 AB209910 AB464301 AF017789	240980	+	AB463658 AY351676 NM_194251 AK122627	309799	-	BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##AK128738|RBM27|54439|RNA binding motif protein 27##NM_020117|LARS|51520|leucyl-tRNA synthetase##BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3##NM_001040006|TCERG1|10915|transcription elongation regulator 1##NM_006706|TCERG1|10915|transcription elongation regulator 1##AK304319|TCERG1|10915|transcription elongation regulator 1##BC006109|TCERG1|10915|transcription elongation regulator 1##BC014151|TCERG1|10915|transcription elongation regulator 1##BC062351|TCERG1|10915|transcription elongation regulator 1##AK126455|TCERG1|10915|transcription elongation regulator 1##BC111727|TCERG1|10915|transcription elongation regulator 1##AB209910|TCERG1|10915|transcription elongation regulator 1##AF017789|TCERG1|10915|transcription elongation regulator 1##AY351676|GPR151|134391|G protein-coupled receptor 151##NM_194251|GPR151|134391|G protein-coupled receptor 151	2.962292	0.0	denovo_WM_7:23:0.749	denovo_WM_7:-41:0.243	denovo_WM_7:-42:0.376	denovo_WM_7:-45:0.238	denovo_WM_7:-100:0.446	denovo_WM_7:-101:0.506
chr10	101619530	101619646	reg1006614.p1	6.411	+	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	-77025	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	-77093	+	BX537557 NM_004376 NM_078470	-127166	-	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	71115	-	TSC_hg19_v1_chr10_-_101769671 AL833283 NM_015221	150073	-	X14329 BC027897 NM_001308 AK313972	222037	-	X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BX537557|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_004376|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_078470|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##AK128576|DNMBP|23268|dynamin binding protein##AL833283|DNMBP|23268|dynamin binding protein##NM_015221|DNMBP|23268|dynamin binding protein##X14329|CPN1|1369|carboxypeptidase N, polypeptide 1##BC027897|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_001308|CPN1|1369|carboxypeptidase N, polypeptide 1##AK313972|CPN1|1369|carboxypeptidase N, polypeptide 1	0.996729	0.0	denovo_WM_7:45:0.527	denovo_WM_7:46:0.470
chr14	96192418	96192577	reg1005954.p1	6.411	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	-12030	-	BC051000 NM_004918 AF137027 AB018563 AF110466 BC041616 AB590931 CR457087	-39719	+	TSC_hg19_v1_chr14_+_96001402 DQ083331	-191064	+	AK023027 TSC_hg19_v1_chr14_+_96342762	150248	+	TSC_hg19_v1_chr14_+_96505698 NM_001252507 BC043593 AB621830 AK001590	313149	+	CR749338 U35875 TSC_hg19_v1_chr14_+_96671131 NM_000623	478580	+	CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC051000|TCL1B|9623|T-cell leukemia/lymphoma 1B##NM_004918|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF137027|TCL1B|9623|T-cell leukemia/lymphoma 1B##AB018563|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF110466|TCL1B|9623|T-cell leukemia/lymphoma 1B##BC041616|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR457087|TCL1B|9623|T-cell leukemia/lymphoma 1B##DQ083331|GLRX5|51218|glutaredoxin 5##AK023027|LOC100507043|100507043|uncharacterized LOC100507043##NM_001252507|C14orf132|56967|chromosome 14 open reading frame 132##BC043593|C14orf132|56967|chromosome 14 open reading frame 132##AB621830|C14orf132|56967|chromosome 14 open reading frame 132##AK001590|C14orf132|56967|chromosome 14 open reading frame 132##CR749338|BDKRB2|624|bradykinin receptor B2##NM_000623|BDKRB2|624|bradykinin receptor B2	0.0	0.0	
chr17	73744013	73744163	reg1006851.p1	6.411	+	BC109238 TSC_hg19_v1_chr17_+_73723807	-20317	+	NM_001005619 X52186 AF011375	-23309	+	BC118916 TSC_hg19_v1_chr17_+_73717603 AB208913	-26487	+	BT007005 CU674592 TSC_hg19_v1_chr17_-_73761274 U26401 AK316181 AK314890 AK303748 BC001166 AK130064 AK310203 NM_000154 AK303832	17193	-	L05088 TSC_hg19_v1_chr17_-_73774461	30367	-	BC108701 AF218029 BC001124 BC006497 BC012813 BC017558 TSC_hg19_v1_chr17_-_73775861 BX647280 AK130772 AK304607 AK312762 BX537379 NM_005324	31753	-	BC109238|ITGB4|3691|integrin, beta 4##NM_001005619|ITGB4|3691|integrin, beta 4##X52186|ITGB4|3691|integrin, beta 4##AF011375|ITGB4|3691|integrin, beta 4##BC118916|ITGB4|3691|integrin, beta 4##AB208913|ITGB4|3691|integrin, beta 4##BT007005|GALK1|2584|galactokinase 1##U26401|GALK1|2584|galactokinase 1##AK316181|GALK1|2584|galactokinase 1##AK314890|GALK1|2584|galactokinase 1##AK303748|GALK1|2584|galactokinase 1##BC001166|GALK1|2584|galactokinase 1##AK130064|GALK1|2584|galactokinase 1##AK310203|GALK1|2584|galactokinase 1##NM_000154|GALK1|2584|galactokinase 1##AK303832|GALK1|2584|galactokinase 1##BC108701|H3F3B|3021|H3 histone, family 3B (H3.3B)##AF218029|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC001124|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC006497|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC012813|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC017558|H3F3B|3021|H3 histone, family 3B (H3.3B)##BX647280|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK130772|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK304607|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK312762|H3F3B|3021|H3 histone, family 3B (H3.3B)##BX537379|H3F3B|3021|H3 histone, family 3B (H3.3B)##NM_005324|H3F3B|3021|H3 histone, family 3B (H3.3B)	0.0	0.927597	CTCF.p2:-7:0.928
chr3	90231821	90231974	reg1005959.p1	6.411	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-1075047	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-1075176	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-2032869	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	3460779	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	3461021	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	3467130	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.999301	0.419758	CTCF.p2:-22:0.420	denovo_WM_7:35:0.921
chr5	45793733	45793913	reg1007361.p1	6.411	+	AF488549 NM_021072	-97604	-	AF064876 TSC_hg19_v1_chr5_-_45695947	-97932	-	TSC_hg19_v1_chr5_+_44809056 AF146192 AL355715 NM_016640 AK222704 BC007735 AK222894 AL136706 AK074777 CU675783 BC002460	-984796	+	AK300860 TSC_hg19_v1_chr5_-_49737200 BC059398	3943376	-	TSC_hg19_v1_chr5_-_49737229 NM_198449	3943420	-	AK298680 AK314466 BC105789 NM_001178055	4167909	+	AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF064876|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF146192|MRPS30|10884|mitochondrial ribosomal protein S30##AL355715|MRPS30|10884|mitochondrial ribosomal protein S30##NM_016640|MRPS30|10884|mitochondrial ribosomal protein S30##AK222704|MRPS30|10884|mitochondrial ribosomal protein S30##BC007735|MRPS30|10884|mitochondrial ribosomal protein S30##AK222894|MRPS30|10884|mitochondrial ribosomal protein S30##AL136706|MRPS30|10884|mitochondrial ribosomal protein S30##AK074777|MRPS30|10884|mitochondrial ribosomal protein S30##BC002460|MRPS30|10884|mitochondrial ribosomal protein S30##AK300860|EMB|133418|embigin##BC059398|EMB|133418|embigin##NM_198449|EMB|133418|embigin##AK298680|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK314466|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##BC105789|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_001178055|PARP8|79668|poly (ADP-ribose) polymerase family, member 8	0.994851	0.0	denovo_WM_7:-62:0.364	denovo_WM_7:-63:0.631
chr12	46860750	46860879	reg1006937.p1	6.410	+	TSC_hg19_v1_chr12_-_46766619 NM_018976	-94211	-	TSC_hg19_v1_chr12_-_46766555 AK291644 BC040342 AK001700 AJ344099 AF298897	-94525	-	NM_001077484 NM_030674	-197607	-	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	358942	-	TSC_hg19_v1_chr12_+_47473404 BC072670	612583	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	612769	-	NM_018976|SLC38A2|54407|solute carrier family 38, member 2##AK291644|SLC38A2|54407|solute carrier family 38, member 2##BC040342|SLC38A2|54407|solute carrier family 38, member 2##AK001700|SLC38A2|54407|solute carrier family 38, member 2##AJ344099|SLC38A2|54407|solute carrier family 38, member 2##AF298897|SLC38A2|54407|solute carrier family 38, member 2##NM_001077484|SLC38A1|81539|solute carrier family 38, member 1##NM_030674|SLC38A1|81539|solute carrier family 38, member 1##AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2	0.989807	0.0	denovo_WM_7:-9:0.944
chr17	57286828	57286961	reg1004163.p2	6.410	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	-53774	+	NM_018304	-54035	+	NM_001100595 NM_182620	-54095	-	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	503	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	11004	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	122124	+	AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11##NM_018304|PRR11|55771|proline rich 11##NM_001100595|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_182620|SKA2|348235|spindle and kinetochore associated complex subunit 2##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)	1.9543	0.0	denovo_WM_7:12:0.950	denovo_WM_7:27:0.953
chr22	38573028	38573195	reg1001380.p1	6.410	+	TSC_hg19_v1_chr22_-_38506676 AY358164 NM_025045	-66434	-	CU677367 TSC_hg19_v1_chr22_-_38506639 AK026235 BC015619	-66509	-	AF132610 NM_013356	-93953	-	CR456543 TSC_hg19_v1_chr22_-_38577838 AK291212 BC036742 AL080187 NM_001004426 NM_003560 AF064594 AK308308 BC051904 AK096521 AK290825 NM_001199562 AK300459	4682	-	NM_001161572 NM_001161574 NM_012323 TSC_hg19_v1_chr22_+_38597996 AK002001 BC067751 AK300932 AJ010857	24866	+	BC015037 TSC_hg19_v1_chr22_+_38598094 AB025247	24975	+	AY358164|BAIAP2L2|80115|BAI1-associated protein 2-like 2##NM_025045|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AK026235|BAIAP2L2|80115|BAI1-associated protein 2-like 2##BC015619|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AF132610|SLC16A8|23539|solute carrier family 16, member 8 (monocarboxylic acid transporter 3)##NM_013356|SLC16A8|23539|solute carrier family 16, member 8 (monocarboxylic acid transporter 3)##CR456543|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK291212|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC036742|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AL080187|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001004426|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_003560|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AF064594|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK308308|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC051904|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK096521|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK290825|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001199562|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK300459|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001161572|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_001161574|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_012323|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK002001|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC067751|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK300932|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AJ010857|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC015037|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AB025247|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)	0.993702	0.0	denovo_WM_7:-54:0.813
chr1	32282622	32282802	reg1006658.p1	6.409	+	BC114430 AK131447 NM_144569 AK091016 AX746730	-1113	-	TSC_hg19_v1_chr1_-_32264318 AK095829	-18391	-	BC029069 AK096192 TSC_hg19_v1_chr1_-_32264233 BC007910	-18472	-	NM_001195100 NM_001195101	102546	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	121219	-	TSC_hg19_v1_chr1_-_32403992 NM_080391	121285	-	BC114430|SPOCD1|90853|SPOC domain containing 1##AK131447|SPOCD1|90853|SPOC domain containing 1##NM_144569|SPOCD1|90853|SPOC domain containing 1##AK091016|SPOCD1|90853|SPOC domain containing 1##AK095829|SPOCD1|90853|SPOC domain containing 1##BC029069|SPOCD1|90853|SPOC domain containing 1##BC007910|SPOCD1|90853|SPOC domain containing 1##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2	0.997519	0.0	denovo_WM_7:17:0.493	denovo_WM_7:18:0.493
chr13	99959854	99960034	reg1000440.p2	6.408	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-246	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-49330	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-106825	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	193756	+	TSC_hg19_v1_chr13_+_100153777 BC130293	193838	+	BC041830 TSC_hg19_v1_chr13_+_100229390	269433	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.0	0.0	
chr12	31963989	31964139	reg1006634.p1	6.407	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	-18860	-	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-82008	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-82090	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	148267	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	148330	+	TSC_hg19_v1_chr12_+_32259750 BC010091	295650	+	BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)	0.986104	0.0	denovo_WM_7:-90:0.807
chr3	33180853	33180964	reg1005298.p2	6.407	+	TSC_hg19_v1_chr3_+_33155562 AJ006470 CU679079 DQ893221 DQ896550	-25335	+	TSC_hg19_v1_chr3_+_33155553 NM_006371 AK314719 AK298250 AK075401 AK126433 AK001634 AK091772 BC008745 AK097650 AK092990	-25408	+	AK223091 AK300753 TSC_hg19_v1_chr3_-_33138639 NM_000404 NM_001135602	-42227	-	AB011099 NM_015551	79798	-	TSC_hg19_v1_chr3_+_33318965 AK001271 NM_012157 AK302218 NM_001171713 AK303764 AK299665 AK294209 AF174589 AK316229 AK001438 AK298967 AK297534 AF186273 BC031556	138042	+	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	300628	-	AJ006470|CRTAP|10491|cartilage associated protein##DQ893221|CRTAP|10491|cartilage associated protein##DQ896550|CRTAP|10491|cartilage associated protein##NM_006371|CRTAP|10491|cartilage associated protein##AK314719|CRTAP|10491|cartilage associated protein##AK298250|CRTAP|10491|cartilage associated protein##AK075401|CRTAP|10491|cartilage associated protein##AK126433|CRTAP|10491|cartilage associated protein##AK001634|CRTAP|10491|cartilage associated protein##AK091772|CRTAP|10491|cartilage associated protein##BC008745|CRTAP|10491|cartilage associated protein##AK097650|CRTAP|10491|cartilage associated protein##AK092990|CRTAP|10491|cartilage associated protein##AK223091|GLB1|2720|galactosidase, beta 1##AK300753|GLB1|2720|galactosidase, beta 1##NM_000404|GLB1|2720|galactosidase, beta 1##NM_001135602|GLB1|2720|galactosidase, beta 1##AB011099|SUSD5|26032|sushi domain containing 5##NM_015551|SUSD5|26032|sushi domain containing 5##AK001271|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_012157|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK302218|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_001171713|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK303764|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK299665|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK294209|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF174589|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK316229|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK001438|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK298967|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK297534|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF186273|FBXL2|25827|F-box and leucine-rich repeat protein 2##BC031556|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)	1.209107	0.0	denovo_WM_7:66:0.248	denovo_WM_7:67:0.248	denovo_WM_7:68:0.248	denovo_WM_7:69:0.248
chr8	60873200	60873325	reg1006706.p1	6.407	+	AB385385 DQ891665 DQ894852 AK000971 BC016665 AK302331 AB018351 NM_014729 TSC_hg19_v1_chr8_-_60031796	-841590	-	NM_003580 TSC_hg19_v1_chr8_-_59572413	-1300851	-	BC041124 TSC_hg19_v1_chr8_-_59572386	-1300876	-	BC015531 BC108929 BC082971 TSC_hg19_v1_chr8_-_61193958 BC069744 AK090655 AK289470 AK314538 AY075022 NM_004056	320659	-	TSC_hg19_v1_chr8_+_61429488 NM_001242644 NM_002865	556178	+	AK297576 TSC_hg19_v1_chr8_+_61429494	556232	+	DQ891665|TOX|9760|thymocyte selection-associated high mobility group box##DQ894852|TOX|9760|thymocyte selection-associated high mobility group box##AK000971|TOX|9760|thymocyte selection-associated high mobility group box##BC016665|TOX|9760|thymocyte selection-associated high mobility group box##AK302331|TOX|9760|thymocyte selection-associated high mobility group box##AB018351|TOX|9760|thymocyte selection-associated high mobility group box##NM_014729|TOX|9760|thymocyte selection-associated high mobility group box##NM_003580|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC041124|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC015531|CA8|767|carbonic anhydrase VIII##BC108929|CA8|767|carbonic anhydrase VIII##BC069744|CA8|767|carbonic anhydrase VIII##AK090655|CA8|767|carbonic anhydrase VIII##AK289470|CA8|767|carbonic anhydrase VIII##AK314538|CA8|767|carbonic anhydrase VIII##AY075022|CA8|767|carbonic anhydrase VIII##NM_004056|CA8|767|carbonic anhydrase VIII##NM_001242644|RAB2A|5862|RAB2A, member RAS oncogene family##NM_002865|RAB2A|5862|RAB2A, member RAS oncogene family##AK297576|RAB2A|5862|RAB2A, member RAS oncogene family	1.072198	0.0	
chr5	118704053	118704160	reg1004877.p3	6.406	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	-12368	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	-12488	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-99589	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	84090	+	AF427126 AY692447 NM_001163991 NM_182761 BC040622 BC128242 BC128243	261210	+	BC011941 TSC_hg19_v1_chr5_-_119740564	1036444	-	AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AF427126|FAM170A|340069|family with sequence similarity 170, member A##AY692447|FAM170A|340069|family with sequence similarity 170, member A##NM_001163991|FAM170A|340069|family with sequence similarity 170, member A##NM_182761|FAM170A|340069|family with sequence similarity 170, member A##BC040622|FAM170A|340069|family with sequence similarity 170, member A##BC128242|FAM170A|340069|family with sequence similarity 170, member A##BC128243|FAM170A|340069|family with sequence similarity 170, member A	0.08533	0.0	
chr9	130753789	130753883	reg1005182.p1	6.405	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-11027	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-40905	-	BC015233 NM_003863	-53074	-	AK122729 NM_197956	75762	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	76647	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	76783	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.999575	0.0	denovo_WM_7:0:0.425	denovo_WM_7:1:0.425
chr19	18215025	18215205	reg1006536.p2	6.404	+	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	-6506	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	-17383	-	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	-96097	+	BC063240 TSC_hg19_v1_chr19_+_18263972	48866	+	TSC_hg19_v1_chr19_+_18264004 BC070082 NM_005027 BC090249	48917	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	69476	+	NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3##EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##BC070082|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_005027|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##BC090249|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30	1.011357	0.0	
chr22	40598231	40598330	reg1006513.p1	6.404	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-24281	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-156848	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	-157371	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	144252	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	168309	+	TSC_hg19_v1_chr22_+_40766619 AK295469	168339	+	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3	1.013905	0.0	denovo_WM_7:-10:0.201	denovo_WM_7:-11:0.297
chr6	23224926	23225063	reg1006921.p1	6.404	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	-655269	+	X54394 X54393 GQ305133 M58594 NM_001163558	-921947	-	BC015850 NM_000948	-927265	-	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	901436	+	AF181722 NM_181337	1132136	+	AF181721 NM_016356	1133285	-	NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1##AF181721|DCDC2|51473|doublecortin domain containing 2##NM_016356|DCDC2|51473|doublecortin domain containing 2	0.973605	0.0	denovo_WM_7:13:0.456	denovo_WM_7:14:0.247	denovo_WM_7:16:0.204
chr18	4468783	4468936	reg1008648.p1	6.403	+	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	-13589	-	AK304101 TSC_hg19_v1_chr18_-_4455255	-13606	-	AK294777 AK294717 NM_001242762 NM_001242763	-594132	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	728393	-	TSC_hg19_v1_chr18_+_5238098 AK056929 BC041875	769244	+	TSC_hg19_v1_chr18_-_5295610 NM_001243702	826794	-	AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42##NM_001243702|ZFP161|7541|zinc finger protein 161 homolog (mouse)	1.763781	0.0	denovo_WM_7:6:0.454	denovo_WM_7:-15:0.233	denovo_WM_7:-16:0.233	denovo_WM_7:-17:0.233	denovo_WM_7:-18:0.233
chr21	37873494	37873663	reg1005941.p1	6.403	+	AF314090 AY355348 NM_001146079 NM_144492	-21191	-	BC012126 NM_012130 AY355349	-34847	-	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	-115888	+	AJ566765 NM_001146078	41319	-	AJ566766 NM_001146077	75288	-	BC052313 BC067104 TSC_hg19_v1_chr21_+_38071448	197862	+	AF314090|CLDN14|23562|claudin 14##AY355348|CLDN14|23562|claudin 14##NM_001146079|CLDN14|23562|claudin 14##NM_144492|CLDN14|23562|claudin 14##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AJ566765|CLDN14|23562|claudin 14##NM_001146078|CLDN14|23562|claudin 14##AJ566766|CLDN14|23562|claudin 14##NM_001146077|CLDN14|23562|claudin 14	1.9883	0.0	denovo_WM_7:60:0.232	denovo_WM_7:80:0.201	denovo_WM_7:81:0.233
chr22	38785436	38785589	reg1006181.p2	6.403	+	AB024597 NM_001894	-71424	-	TSC_hg19_v1_chr22_-_38713439 NM_152221	-72098	-	BC006490 AB091043 TSC_hg19_v1_chr22_-_38713340 AK223498	-72221	-	TSC_hg19_v1_chr22_-_38794883 AK307225 AK310303	9356	-	NM_004981 S72503 U07364	54520	-	CR456507 BC039618 U24056 NM_152868 BC032562	65596	-	AB024597|CSNK1E|1454|casein kinase 1, epsilon##NM_001894|CSNK1E|1454|casein kinase 1, epsilon##NM_152221|CSNK1E|1454|casein kinase 1, epsilon##BC006490|CSNK1E|1454|casein kinase 1, epsilon##AB091043|CSNK1E|1454|casein kinase 1, epsilon##AK223498|CSNK1E|1454|casein kinase 1, epsilon##AK307225|LOC400927|400927|TPTE and PTEN homologous inositol lipid phosphatase pseudogene##NM_004981|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##S72503|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U07364|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##CR456507|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC039618|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U24056|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##NM_152868|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC032562|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4	0.99757	0.0	denovo_WM_7:-28:0.339	denovo_WM_7:-31:0.535
chr4	39933427	39933579	reg1006003.p2	6.403	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-233699	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-292947	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-403877	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	45835	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	46090	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	125029	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.999734	0.0	denovo_WM_7:16:0.230	denovo_WM_7:17:0.230	denovo_WM_7:18:0.230	denovo_WM_7:19:0.230
chr17	72660098	72660268	reg1006523.p2	6.402	+	BC100888 BC100889 BC100890 AK298031 AF395839 BX648376 AK303545 NM_181449	-40338	-	EF137868 NM_001115152 AY358148	-71788	-	AK056444 NM_152460	-79127	+	NM_175738 TSC_hg19_v1_chr17_+_72667269 BC040547 AK290202	7084	+	TSC_hg19_v1_chr17_+_72667316 AK054846	7134	+	AF251706 AY303545 AK315165 TSC_hg19_v1_chr17_-_72709081 AK298752 AY358545 AK092757 AX747710 NM_139018 BC028199	48884	-	BC100888|CD300E|342510|CD300e molecule##BC100889|CD300E|342510|CD300e molecule##BC100890|CD300E|342510|CD300e molecule##AK298031|CD300E|342510|CD300e molecule##AF395839|CD300E|342510|CD300e molecule##BX648376|CD300E|342510|CD300e molecule##AK303545|CD300E|342510|CD300e molecule##NM_181449|CD300E|342510|CD300e molecule##EF137868|CD300LD|100131439|CD300 molecule-like family member d##NM_001115152|CD300LD|100131439|CD300 molecule-like family member d##AY358148|CD300LD|100131439|CD300 molecule-like family member d##AK056444|C17orf77|146723|chromosome 17 open reading frame 77##NM_152460|C17orf77|146723|chromosome 17 open reading frame 77##NM_175738|RAB37|326624|RAB37, member RAS oncogene family##BC040547|RAB37|326624|RAB37, member RAS oncogene family##AK290202|RAB37|326624|RAB37, member RAS oncogene family##AK054846|RAB37|326624|RAB37, member RAS oncogene family##AF251706|CD300LF|146722|CD300 molecule-like family member f##AY303545|CD300LF|146722|CD300 molecule-like family member f##AK315165|CD300LF|146722|CD300 molecule-like family member f##AK298752|CD300LF|146722|CD300 molecule-like family member f##AY358545|CD300LF|146722|CD300 molecule-like family member f##AK092757|CD300LF|146722|CD300 molecule-like family member f##NM_139018|CD300LF|146722|CD300 molecule-like family member f##BC028199|CD300LF|146722|CD300 molecule-like family member f	2.036585	0.0	denovo_WM_7:-41:0.545	denovo_WM_7:-42:0.417	denovo_WM_7:-56:0.485	denovo_WM_7:-57:0.498
chr5	110673134	110673283	reg1006292.p1	6.402	+	L24959 TSC_hg19_v1_chr5_+_110560081 NM_001744 AK311662 AK312840 BC025687 BC016695 D30742 L17000 AB529005 CU677679 DQ892902 DQ893195 DQ893196 DQ896523 DQ896524 DQ896525 DQ896526	-113259	+	AF385437 NM_139281 BC133025 BC136517 AK095312 TSC_hg19_v1_chr5_+_110428045 AL832494	-245249	+	AY037115 NM_033035	-265819	+	AK054566 NM_139164 TSC_hg19_v1_chr5_-_110848234 AK290312 AK310848 BC019632 AK125317 AK308851 AK315863 AK315869	174994	-	BC042956 TSC_hg19_v1_chr5_-_110848300	175086	-	NM_001142483	418739	-	L24959|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##NM_001744|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AK311662|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AK312840|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##BC025687|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##BC016695|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##D30742|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##L17000|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ892902|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ893195|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ893196|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896523|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896524|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896525|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896526|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AF385437|WDR36|134430|WD repeat domain 36##NM_139281|WDR36|134430|WD repeat domain 36##BC133025|WDR36|134430|WD repeat domain 36##BC136517|WDR36|134430|WD repeat domain 36##AK095312|WDR36|134430|WD repeat domain 36##AL832494|WDR36|134430|WD repeat domain 36##AY037115|TSLP|85480|thymic stromal lymphopoietin##NM_033035|TSLP|85480|thymic stromal lymphopoietin##AK054566|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_139164|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK290312|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK310848|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC019632|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK125317|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK308851|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315863|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315869|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC042956|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_001142483|C5orf13|9315|chromosome 5 open reading frame 13	0.995075	0.0	denovo_WM_7:3:0.736
chr3	189819050	189819230	reg1004668.p1	6.401	+	AK304127 NM_001114980 NM_001114981 NM_001114982 GQ202689 GQ202690 AF091627 AB010153 AB042841 AF075429 AF075431 AF075433	-311622	+	BC039815 NM_001114978 NM_001114979 NM_003722 AB016072 AB016073 AF116771 Y16961 CU691766 EU446669	-469881	+	AK125682 NM_198485 BC101550 BC101552	-929329	+	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	19555	-	NM_018192	19767	-	NM_001134418	21085	-	AK304127|TP63|8626|tumor protein p63##NM_001114980|TP63|8626|tumor protein p63##NM_001114981|TP63|8626|tumor protein p63##NM_001114982|TP63|8626|tumor protein p63##GQ202689|TP63|8626|tumor protein p63##GQ202690|TP63|8626|tumor protein p63##AF091627|TP63|8626|tumor protein p63##AB010153|TP63|8626|tumor protein p63##AB042841|TP63|8626|tumor protein p63##AF075429|TP63|8626|tumor protein p63##AF075431|TP63|8626|tumor protein p63##AF075433|TP63|8626|tumor protein p63##BC039815|TP63|8626|tumor protein p63##NM_001114978|TP63|8626|tumor protein p63##NM_001114979|TP63|8626|tumor protein p63##NM_003722|TP63|8626|tumor protein p63##AB016072|TP63|8626|tumor protein p63##AB016073|TP63|8626|tumor protein p63##AF116771|TP63|8626|tumor protein p63##Y16961|TP63|8626|tumor protein p63##EU446669|TP63|8626|tumor protein p63##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1##NM_001134418|LEPREL1|55214|leprecan-like 1	0.99928	0.0	
chr7	73688841	73688937	reg1002937.p1	6.401	+	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	-20153	-	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	-20178	-	TSC_hg19_v1_chr7_+_73624361 AF252613	-64535	+	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	14898	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	179275	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	179419	+	NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AF252613|LAT2|7462|linker for activation of T cells family, member 2##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1	0.915304	0.0	denovo_WM_7:-6:0.481
chr22	43515266	43515420	reg1006553.p1	6.400	+	NM_001197 TSC_hg19_v1_chr22_+_43506755 BC001599 U49730 U34584	-8571	+	TSC_hg19_v1_chr22_-_43485410 AF104927 AF173935 AK315658 BC009058 AK095996 BC014968 AL136687 NM_012263	-29956	-	TSC_hg19_v1_chr22_-_43411156 NM_001184970	-104166	-	TSC_hg19_v1_chr22_-_43539355 BC030985 AL359401 AL359403 AK314059	24009	-	TSC_hg19_v1_chr22_-_43539392 BC042195	24049	-	NM_014507 NM_173467 TSC_hg19_v1_chr22_-_43539405	24060	-	NM_001197|BIK|638|BCL2-interacting killer (apoptosis-inducing)##BC001599|BIK|638|BCL2-interacting killer (apoptosis-inducing)##U49730|BIK|638|BCL2-interacting killer (apoptosis-inducing)##U34584|BIK|638|BCL2-interacting killer (apoptosis-inducing)##AF104927|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AF173935|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AK315658|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##BC009058|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AK095996|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##BC014968|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AL136687|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##NM_012263|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##NM_001184970|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##BC030985|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359401|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359403|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AK314059|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##BC042195|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##NM_014507|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##NM_173467|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)	0.376986	0.0	denovo_WM_7:-33:0.337
chr21	32727449	32727568	reg1005686.p2	6.399	+	AB096964 NM_001099219	-316714	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-473650	-	AJ457063 AB096962 NM_181606	-525520	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	203850	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	304499	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	346610	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.995817	0.0	denovo_WM_7:-10:0.456	denovo_WM_7:-11:0.456
chr6	16482179	16482359	reg1005584.p3	6.399	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-243418	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-338959	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-352832	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	279428	-	NM_001190766	620219	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	799585	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.994421	0.0	denovo_WM_7:-18:0.944
chr22	18281069	18281249	reg1006061.p1	6.398	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-23825	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-23936	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-23952	-	TSC_hg19_v1_chr22_-_18484268 AK127487	203069	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	226102	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	279529	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.0	0.0	
chr2	219148871	219149001	reg1006853.p2	6.398	+	AF318057 AF417001 NM_001077399 NM_015488 AK289867 TSC_hg19_v1_chr2_+_219135241 BC036457 AY039043 BC021118 AL080092 CU676836 EU831585 EU831670 AB033010	-13743	+	AK131047 TSC_hg19_v1_chr2_-_219134886 NM_001087	-14056	-	TSC_hg19_v1_chr2_-_219134861 BC039866 CR456755 M95627	-14082	-	TSC_hg19_v1_chr2_-_219157237 AF193045 BC007980 AK095270 AK300597 AK298123 BC026348 AK130713 AK298500 BC026693 AK130380 BC013428 NM_022152	8319	-	TSC_hg19_v1_chr2_+_219187970 NM_022572	38979	+	TSC_hg19_v1_chr2_+_219188021 AY358753 CU678300 AM393075 AM393168 BC002937 AK309308	39101	+	AF318057|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AF417001|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_001077399|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_015488|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK289867|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC036457|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AY039043|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC021118|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AL080092|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##EU831585|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##EU831670|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AB033010|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK131047|AAMP|14|angio-associated, migratory cell protein##NM_001087|AAMP|14|angio-associated, migratory cell protein##BC039866|AAMP|14|angio-associated, migratory cell protein##CR456755|AAMP|14|angio-associated, migratory cell protein##M95627|AAMP|14|angio-associated, migratory cell protein##AF193045|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC007980|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK300597|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK298123|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC026348|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK130713|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK298500|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC026693|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##AK130380|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##BC013428|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##NM_022152|TMBIM1|64114|transmembrane BAX inhibitor motif containing 1##NM_022572|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AY358753|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393075|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393168|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC002937|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK309308|PNKD|25953|paroxysmal nonkinesigenic dyskinesia	0.993167	0.0	denovo_WM_7:-36:0.497
chr1	114402211	114402391	reg1001183.p4	6.397	+	TSC_hg19_v1_chr1_-_114354906 AK002082 BC026155 NM_018364 AK292552	-47300	-	TSC_hg19_v1_chr1_-_114354898 CU693140 CR627402	-47420	-	TSC_hg19_v1_chr1_-_114302096 BC002447	-100161	-	AB587398 JN084012 AF001846 AF001847 GU479452 AF150732 AF077031 BC071670 AK303124 TSC_hg19_v1_chr1_-_114414332 AK310570 AK310698 BC017785 NM_001193431 NM_012411 NM_015967	12008	-	AY265861 AY265862 AY265863 AY265864 BC127719 BC127720 TSC_hg19_v1_chr1_-_114430038 BC132904 BC132906 CR749373	27737	-	NM_001010922 TSC_hg19_v1_chr1_-_114430204 AK289439	27885	-	AK002082|RSBN1|54665|round spermatid basic protein 1##BC026155|RSBN1|54665|round spermatid basic protein 1##NM_018364|RSBN1|54665|round spermatid basic protein 1##AK292552|RSBN1|54665|round spermatid basic protein 1##CR627402|RSBN1|54665|round spermatid basic protein 1##BC002447|PHTF1|10745|putative homeodomain transcription factor 1##JN084012|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF001846|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##GU479452|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF150732|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF077031|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC071670|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK303124|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310570|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310698|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC017785|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_001193431|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_012411|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_015967|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AY265861|BCL2L15|440603|BCL2-like 15##AY265862|BCL2L15|440603|BCL2-like 15##AY265863|BCL2L15|440603|BCL2-like 15##AY265864|BCL2L15|440603|BCL2-like 15##BC127719|BCL2L15|440603|BCL2-like 15##BC127720|BCL2L15|440603|BCL2-like 15##BC132904|BCL2L15|440603|BCL2-like 15##BC132906|BCL2L15|440603|BCL2-like 15##CR749373|BCL2L15|440603|BCL2-like 15##NM_001010922|BCL2L15|440603|BCL2-like 15##AK289439|BCL2L15|440603|BCL2-like 15	0.0	0.0	
chr14	106913049	106913217	reg1004773.p1	6.397	+	M26436 AF460777 AF460681 AF460752 AF460755 AF460757 AF460765 AF460810 AF460812 AF460831 DQ523929 DQ454948 AY671729 DQ454947 DQ454726 DQ523868 GU552769 DQ454532 DQ454722 DQ455007 AY003768 DQ454459 DQ454476 DQ454521 DQ454576 DQ454700 DQ454857 DQ454950 DQ454951 DQ454992 AY003754 AY003755 DQ454385 DQ454512 DQ454519 DQ454523 DQ454525 DQ454871 DQ454911 DQ454957 DQ454995 DQ523886 DQ523909 DQ454708 DQ454834 DQ454952 Z30547 AY003759 AY003846 DQ454513 DQ454543 DQ454553 DQ454573 DQ454584 DQ454861 DQ454999 DQ523882 DQ523894 Z30596 Z30671 Z30678 DQ454574 DQ454641 DQ523872 DQ523875 DQ523877 DQ523881 DQ523885 DQ523893 DQ523931 GQ232855 DQ454511 DQ454569 DQ454914 AY671731 DQ454648 DQ454670 DQ454712 DQ454826 DQ454910 DQ523930 DQ454724 DQ523928 EF583668 FJ873953 FJ874088 FJ874094 HM116105 HM116162 HM116163 HM116170 HM116175 HM116205 HM116208 HM116216 HM116219 HM116221 HM116222 AF017461 AY003739 EF566908 EU433882 EF566910 EF175421 EF091928 EF175407 EF175434 JF810279 DQ454890 EU099169 GQ232853 GQ232860 EU099112 AY577306 AY671269 EU099238 EU099255 EU099278 EU099267 AY393182 DQ454516 DQ523927 EU099061 EU099227 EU099280 AY393164 AY393167 AY393170 AY393173 AY393175 AY393184 DQ454761 DQ454509 U86799 U86800 AM279538 AM279578 AF103061 AF103313 AF103094 AF103102 AF103108 AF103178 AF103316 AF103344 AF103175 FJ385434 Z46857 AF103048 AY671390 AF103191 AF103306 DQ454773 FJ385373 FJ385423 JN110934 FJ385353 FJ385377 FJ385435 DQ100712 S56197 Y14936 AF103053 AF103287 AF103337 AF103362 EF624226 EU146343 AB266512 AJ233696 AJ233713 AJ241346 AJ241354 AJ241355 AY671271 DQ926071 L06023 Y08143 AY062315 AY671071 AY671083 AY671086 AY671327 AY671329 AY671334 AY671338 AY671339 AY671340 AY671350 AY671352 AY671355 AY671358 AY671360 AY671361 AY671363 AY671466 AY671475 AY671490 AY671495 AY671496 AY671497 AY671504 HM995782 HM995595 HM996519 Z75393 HM996222 HM996265 HM996480 AB067362 AF408717 AJ579116 DQ454486 DQ454510 DQ524001 DQ524017 DQ524030 DQ524032 DQ524038 DQ524060 DQ524061 DQ524131 HQ378355 DQ100921 AB363103 AF062292 AF103242 AJ271556 AJ300809 AM233765 AM233768 AY640481 AY670800 AY670844 AY686871 AY686878 AY686881 AY686888 AY998731 DQ065717 DQ100791 DQ100892 DQ100903 DQ100904 DQ100916 DQ454483 DQ454484 DQ523946 DQ523952 DQ523955 DQ523965 DQ523972 DQ523999 DQ524000 DQ524037 DQ524114 DQ926103 DQ926425 EF178068 EF178083 FJ385292 HM995356 HM995357 HM995358 HM995359 HM995360 HM995369 HM995387 HM995526 HM995565 HM995594 HM995596 HM995842 HM995844 HM996018 HM996190 HM996196 HM996243 HM996279 HM996460 HM996487 HM996520 AY866815 Z70624 DQ100809 AY671701 AB063791 AB063873 AB066905 AB066909 AB067120 AB067278 AB067279 AB067284 AB067289 AB067299 AB363098 AB363104 AB363113 AB374205 AF021958 AF021975 AF021980 AF022006 AF062128 AF062176 AF107238 AF174053 AF174078 AF174082 AF174087 AF174124 AF396470 AF396472 AF396478 AF398963 AF455548 AJ244932 AJ244933 AJ244945 AJ244947 AJ244948 AJ244957 AJ244974 AJ244980 AJ244981 AJ244986 AJ244993 AJ244995 AJ245001 AJ245006 AJ245014 AJ245018 AJ245021 AJ245023 AJ245024 AJ245030 AJ245033 AJ245034 AJ245038 AJ245056 AJ245060 AJ245061 AJ245071 AJ249629 AJ279514 AJ279515 AJ279525 AJ279530 AJ308449 AJ389175 AJ389176 AJ414019 AJ416561 AJ555264 AJ556674 AJ556675 AJ556676 AJ556691 AJ556693 AJ574781 AJ579117 AJ579126 AJ579130 AJ579131 AJ579134 AJ579138 AJ579166 AJ579168 AJ579169 AJ579170 AJ579179 AJ579200 AJ579202 AJ579205 AJ579209 AJ579210 AJ579214 AJ579244 AJ579245 AJ579292 AJ579293 AJ579297 AJ617569 AY165854 AY268372 AY268373 AY300037 AY577300 AY640552 AY670713 AY670734 AY670740 AY670742 AY670747 AY670751 AY670754 AY670758 AY670762 AY670771 AY670774 AY670799 AY670802 AY670805 AY670817 AY670822 AY670823 AY670825 AY670849 AY670850 AY670858 AY670859 AY670865 AY670874 AY670881 AY670894 AY670896 AY670897 AY670902 AY670914 AY670920 AY670922 AY670947 AY670950 AY670955 AY670960 AY670961 AY670970 AY670972 AY670978 AY670980 AY670986 AY670991 AY671017 AY671060 AY671089 AY671090 AY671101 AY671109 AY671112 AY671114 AY671119 AY671124 AY671126 AY671136 AY671137 AY671140 AY671146 AY671264 AY671318 AY671368 AY671369 AY671384 AY671392 AY671418 AY671433 AY671439 AY671482 AY671489 AY671517 AY671524 AY671534 AY671536 AY671545 AY671552 AY671560 AY671562 AY671563 AY671567 AY671572 AY671576 AY671578 AY671582 AY671583 AY671588 AY671598 AY671599 AY671600 AY671602 AY671616 AY671624 AY671626 AY671635 AY671638 AY671661 AY671672 AY671677 AY671681 AY671730 AY671736 AY671744 AY671752 AY671773 AY671774 AY671778 AY671780 AY671786 AY781849 AY885184 AY941931 AY941962 AY941975 AY960198 AY960201 AY971014 AY971044 AY971045 AY971080 AY971086 AY998723 DQ005257 DQ065676 DQ100673 DQ100687 DQ100701 DQ100784 DQ100821 DQ100822 DQ100824 DQ100825 DQ100897 DQ100953 DQ205162 DQ205173 DQ212518 DQ212520 DQ328872 DQ431572 DQ431610 DQ926162 DQ926290 DQ926291 DQ926302 DQ926317 DQ926323 DQ926515 DQ926519 DQ926521 DQ926608 FJ039783 FJ039790 FJ039791 FJ385371 FJ385402 FR820867 FR820868 FR820869 FR820870 FR820871 FR820872 FR820873 FR820875 GU570374 HM152512 HM152521 HQ689769 JN201901 L12190 L43117 U00494 U00566 U00571 U00578 U00581 U64496 U96278 U96280 U96285 U96287 U97243 X84336 X84339 Y08428 Y09249 Y09390 Z18316 Z46285 Z70608 Z70621 Z70622 Z70623 Z70631 Z70632 Z70654 Z70655 Z70656 Z70657 DQ926182 DQ926347 DQ926348 AY944695 DQ535289 DQ535393 DQ535427 DQ535433 DQ535456 EF177973 EF178111 EF178132 FJ385279 AJ579303 X54447 AY392937 X17678 S63731 X54437 Z14197 AY671021 AY670994 AY671000 AY671001 AY671009 AY671012 AY671016 AY671023 AY671031 AY671036 AY671054 AY671142 AY671197 AY671335 AY671182 AF013622 AY671048 AY671052 AY671159 AY671179 AY671239 AY671263 AY671276 AY671279 AY671282 AF013619 AF062204 AF062240 AF247737 AY671165 AY671185 AY671217 AY671297 AY671693 AY671723 AY671725 CU677619 EU937522 L23556 L38425 M99607 U86523 U86524 X65903 X65911 Z14198 Z75364 Z75388 AY671162 X52895 TSC_hg19_v1_chr14_-_106878091 X56158 M97921 AF417843 AK057754 AK057775 AK130529 BC025985 BX640824 AK130609 Z14206 AK126352 AK129514 AK129592 AK129637 AK130589 AK130611 BC016369 BX538077 BX648082 BX648874 Z14195 AK095222 AK303185	-35226	-	AF460708 AF460709 AF460785 AY003807 AY003817 DQ454548 M33859 M33860 DQ454427 DQ454852 DQ454425 DQ454627 DQ454856 GU552743 DQ454416 DQ454458 GQ232904 GU552731 GU552736 AY003787 AF017463 GU552721 GU552724 GU552725 GU552726 GU552727 GU552728 GU552729 GU552730 AY003850 DQ454418 DQ454671 GQ232774 DQ454432 DQ454433 DQ454901 DQ454979 DQ454980 GQ232865 HM995239 JF810276 AY003855 DQ454422 DQ454434 DQ454622 DQ454870 DQ523887 HM116153 HM116169 HM116182 Z30552 Z30557 Z30561 Z30562 Z30573 Z30576 Z30578 Z30580 Z30581 Z30591 Z30599 Z30674 Z30675 Z30677 DQ454531 DQ454860 DQ454903 EU099089 AF004937 AY003796 AY003804 DQ454392 DQ454610 DQ454833 EU620002 FJ840008 FJ840011 FJ840012 FJ840020 FJ840055 FJ874002 FJ874054 FJ874065 FJ874072 FJ874075 FJ874095 HM116113 HM116114 HM116155 HM116159 HM116160 HM116168 HM116177 HM116195 HM116199 HM116226 AF017459 AF017460 EU619988 AJ487490 AY003825 AJ253061 EU350428 DQ454982 X75022 EF091922 EF175396 EF175402 EF407849 EF441754 GU358660 JF810277 GQ232847 GQ232867 GQ232891 GQ232893 GQ232895 GQ232896 GQ232900 GQ232901 GQ232902 DQ454645 EU099068 EU099071 AF103299 EU090244 EU099076 EU099098 HQ392881 HQ392885 HQ392917 AJ253080 EU099079 EU099096 EU099156 EU099191 EU099252 AJ253066 AM183974 AM183975 AM183976 AM183977 AM183978 AM183995 AF484411 AF103180 AJ253083 AF103278 EF624236 AJ240558 AJ253067 S79918 AJ253059 AJ253072 AJ253074 AJ253079 AJ253081 AJ253082 AJ253084 AJ253087 AJ253088 AJ253089 AJ253090 AJ253091 AJ253092 AJ253093 AJ253094 AJ253095 AJ253098 AJ253102 AJ253103 AJ253104 AJ253108 AJ253109 AJ253110 AJ253112 AJ240555 AJ240556 AJ240557 AJ240560 AJ240561 AJ240566 AJ240574 AJ240575 AJ240576 AJ240577 AJ240580 AJ240581 AJ240590 AJ240595 AJ240604 AJ253044 AJ253050 AJ253054 AJ253077 AJ253085 AY671386 HM996508 Y17927 Y17928 Y17930 Y17931 Y17932 Y17933 Y17934 Y17943 Y17944 Y17945 Y17947 Y17948 Y17949 AY998719 DQ100788 DQ100796 JN110760 JN110800 JN110847 FJ385331 FJ385337 FJ385351 FJ385378 HM774705 HM774878 AF103173 AY193818 EU146315 EU146358 EU146377 EU146394 U21257 U21267 U21268 HM774736 AJ222555 HM995235 X87438 AJ222547 AJ222548 AJ222549 AJ222550 AJ222552 AJ222556 AJ222557 AJ222558 AJ222559 AJ222560 AJ222561 AJ222562 AJ222563 AJ222564 AJ222565 AJ222566 AJ222567 AJ222568 AJ222569 AJ222570 AJ222571 AJ222573 AJ222574 AJ222575 AJ222576 AJ222577 AJ222578 Z46300 Z46301 Z46302 Z46315 Z46316 Z46317 Z46318 Z46319 Z46320 Z46321 Z46322 Z46323 Z46324 Z46325 Z46326 Z46327 Z46328 Z46329 Z46330 Z46331 Z46332 Z46333 Z46334 Z46335 Z46336 Z46337 Z46338 Z46339 Z49139 AJ244942 AJ579251 X64156 X64159 AB063716 AJ244940 AJ279524 AJ279537 AJ556751 AJ579178 AY268371 DQ523935 DQ523975 DQ523980 DQ523984 DQ523987 DQ523990 DQ524003 DQ524006 DQ524007 DQ524018 DQ524044 DQ524065 DQ524068 DQ524074 DQ524077 AB067135 AB067136 AJ244997 AM233792 AM233793 AM233795 AM233801 DQ926349 DQ926350 L34163 X64235 AJ300804 AY670741 AY670790 AY670791 AY670810 AY670816 HM994959 HM995182 HM995183 HM995184 HM995185 HM995187 HM995189 HM995203 HM995204 HM995205 HM995206 HM995207 HM995211 HM995216 HM995244 HM995246 HM995249 HM995308 HM995310 HM995472 HM995477 HM995479 HM995481 HM995550 HM995553 HM995554 HM995743 HM995982 HM996230 HM996238 HM996535 AB063661 AB063671 AB063674 AB066914 AB066915 AB066916 AB066917 AB066918 AB066919 AB066920 AB066921 AB066923 AB066924 AB067034 AB067035 AB067036 AB067037 AB067038 AB067039 AB067040 AB067041 AB067044 AB067046 AB067049 AB067052 AB067053 AB067054 AB067055 AB067056 AB067057 AB067058 AB067059 AB067060 AB067064 AB067066 AB067067 AB067068 AB067084 AB067085 AB067088 AB067089 AB067090 AB067091 AB067092 AB067093 AB067132 AB067133 AB067134 AB067137 AB067142 AB067143 AB067144 AB067145 AB067146 AB067148 AB067149 AB067151 AB110646 AB363152 AB363153 AB363154 AF021948 AF021957 AF021990 AF021991 AF021997 AF022004 AF022005 AF052527 AF062104 AF062113 AF062231 AF062234 AF107233 AF107239 AF107241 AF174041 AF174049 AF174054 AF174085 AF174086 AF174088 AF245309 AF262072 AF262097 AF262100 AF262125 AF262174 AF372845 AJ239335 AJ239362 AJ239377 AJ244929 AJ244931 AJ244935 AJ244937 AJ244938 AJ244939 AJ244941 AJ244943 AJ244944 AJ244951 AJ244959 AJ244960 AJ244962 AJ244966 AJ244967 AJ244968 AJ244969 AJ244972 AJ244973 AJ244975 AJ244978 AJ244982 AJ244984 AJ244985 AJ244987 AJ244988 AJ244990 AJ244991 AJ244992 AJ244994 AJ245008 AJ245009 AJ245011 AJ245013 AJ245017 AJ245028 AJ245035 AJ245036 AJ245039 AJ245040 AJ245041 AJ245042 AJ245043 AJ245044 AJ245046 AJ245049 AJ245051 AJ245052 AJ245054 AJ245057 AJ245065 AJ245236 AJ245238 AJ249631 AJ279513 AJ279519 AJ279521 AJ279526 AJ279531 AJ279535 AJ556773 AJ574778 AJ579118 AJ579121 AJ579122 AJ579124 AJ579129 AJ579135 AJ579164 AJ579165 AJ579167 AJ579175 AJ579176 AJ579201 AJ579206 AJ579208 AJ579211 AJ579213 AJ579240 AJ579241 AJ579242 AJ579243 AJ579246 AJ579248 AJ579249 AJ579250 AJ579253 AJ579255 AJ579256 AJ579257 AJ579258 AJ579259 AJ579260 AJ579286 AJ579287 AJ579289 AJ579290 AJ579302 AJ579304 AY033257 AY062304 AY553641 AY553646 AY670708 AY670709 AY670710 AY670711 AY670716 AY670717 AY670718 AY670720 AY670721 AY670722 AY670723 AY670724 AY670730 AY670736 AY670738 AY670739 AY670743 AY670749 AY670750 AY670755 AY670757 AY670760 AY670761 AY670763 AY670766 AY670767 AY670768 AY670772 AY670775 AY670777 AY670779 AY670781 AY670782 AY670785 AY670787 AY670789 AY670794 AY670795 AY670796 AY670798 AY670801 AY670803 AY670804 AY670811 AY670813 AY670814 AY670815 AY670824 AY670826 AY670827 AY670828 AY670833 AY670834 AY670835 AY670838 AY670839 AY670840 AY670841 AY670842 AY670843 AY670845 AY670846 AY670851 AY670853 AY670855 AY670856 AY670860 AY670863 AY670864 AY670867 AY670870 AY670871 AY670873 AY670875 AY670878 AY670879 AY670882 AY670883 AY670884 AY670885 AY670890 AY670892 AY670893 AY670898 AY670899 AY670900 AY670903 AY670904 AY670905 AY670907 AY670911 AY670913 AY670916 AY670918 AY670919 AY670924 AY670928 AY670929 AY670931 AY670932 AY670935 AY670940 AY670943 AY670944 AY670946 AY670949 AY670952 AY670953 AY670954 AY670962 AY670965 AY670973 AY670974 AY670975 AY670976 AY670977 AY670981 AY670990 AY671010 AY671015 AY671024 AY671047 AY671065 AY671073 AY671078 AY671079 AY671087 AY671093 AY671094 AY671095 AY671096 AY671097 AY671099 AY671100 AY671103 AY671104 AY671105 AY671106 AY671107 AY671108 AY671110 AY671113 AY671115 AY671117 AY671118 AY671120 AY671121 AY671122 AY671123 AY671125 AY671128 AY671129 AY671132 AY671134 AY671135 AY671139 AY671145 AY671153 AY671155 AY671161 AY671209 AY671240 AY671245 AY671257 AY671274 AY671277 AY671283 AY671313 AY671314 AY671315 AY671316 AY671317 AY671319 AY671321 AY671322 AY671323 AY671328 AY671330 AY671332 AY671341 AY671345 AY671347 AY671348 AY671349 AY671354 AY671364 AY671366 AY671370 AY671371 AY671380 AY671382 AY671383 AY671393 AY671409 AY671413 AY671416 AY671422 AY671424 AY671425 AY671427 AY671428 AY671429 AY671430 AY671434 AY671435 AY671436 AY671438 AY671441 AY671443 AY671444 AY671445 AY671446 AY671447 AY671449 AY671452 AY671453 AY671454 AY671455 AY671461 AY671462 AY671464 AY671468 AY671471 AY671478 AY671480 AY671481 AY671483 AY671486 AY671487 AY671491 AY671492 AY671503 AY671505 AY671507 AY671508 AY671510 AY671511 AY671515 AY671518 AY671519 AY671525 AY671527 AY671528 AY671530 AY671532 AY671535 AY671538 AY671539 AY671540 AY671541 AY671543 AY671544 AY671548 AY671555 AY671556 AY671561 AY671564 AY671565 AY671566 AY671568 AY671573 AY671574 AY671577 AY671579 AY671580 AY671581 AY671585 AY671587 AY671591 AY671593 AY671595 AY671612 AY671614 AY671617 AY671619 AY671620 AY671625 AY671629 AY671630 AY671632 AY671634 AY671637 AY671640 AY671642 AY671644 AY671648 AY671650 AY671651 AY671653 AY671658 AY671659 AY671660 AY671663 AY671668 AY671671 AY671676 AY671682 AY671684 AY671685 AY671688 AY671690 AY671691 AY671694 AY671697 AY671698 AY671699 AY671700 AY671702 AY671704 AY671706 AY671707 AY671708 AY671712 AY671716 AY671718 AY671724 AY671732 AY671733 AY671734 AY671735 AY671737 AY671739 AY671741 AY671746 AY671749 AY671750 AY671751 AY671753 AY671756 AY671763 AY671764 AY671765 AY671766 AY671767 AY671769 AY671771 AY671776 AY671781 AY671784 AY885181 AY941889 AY941914 AY941957 DQ005274 DQ005285 DQ100660 DQ100674 DQ100703 DQ100725 DQ100792 DQ100829 DQ100832 DQ100964 DQ926158 DQ926198 DQ926208 DQ926421 DQ926458 DQ926468 DQ926470 DQ926478 DQ926497 DQ926599 DQ926603 EF544907 EF544958 EF544959 EF544973 FJ208782 FJ492903 FJ492909 FJ492910 GU570373 HM152498 HM152511 HM152516 HQ392880 HQ689741 L12192 L23518 L23934 L25293 M26998 M74468 S64473 S66098 S67110 U00497 U00556 U22391 U71103 U89766 U97246 X56592 X87440 Z35492 Z46269 Z46271 Z46272 Z46273 Z46275 Z46277 Z46279 Z46282 Z46304 Z46305 Z46306 Z46307 Z46308 Z46340 Z46341 Z46342 Z49135 Z49140 Z49141 Z49143 Z70604 Z70605 Z70610 Z70616 Z70617 Z70625 Z70626 Z70627 Z70637 Z70638 Z70639 Z70640 Z70641 Z70642 Z70643 Z70644 Z70650 Z74665 Z74695 AY670806 AY670808 AY957532 AY686937 AY957534 DQ535279 DQ535294 DQ535296 DQ535314 DQ535320 DQ535326 DQ535459 EF178028 EF178136 HM996258 M84508 FJ039792 M84512 X54441 AY671298 AY670999 AY671028 AF283780 AF283781 M74018 M74021 AY670983 AY670985 AY670987 AY670989 AY670992 AY670993 AY670995 AY670997 AY670998 AY671018 AY671025 AY671033 AY671043 AY671307 AY671310 AY671046 AY671049 AY671205 AF283784 AY671151 AY671233 AJ579207 AY670982 AY671003 AY671029 AY671050 AY671156 AY671160 AY671171 AY671177 AY671190 AY671199 AY671201 AY671212 AY671226 AY671232 AY671235 AY671236 AY671250 AY671251 AY671261 AY671262 AY671270 AY671272 AY671278 AY671281 AY671287 AY671308 Z47229 AF062101 AF062146 AF062152 AF062158 AF062173 AF062181 AF062183 AF062187 AF062192 AF062196 AF062217 AF062218 AF062250 AJ579203 AY204755 AY204757 AY204759 AY204761 AY671006 AY671008 AY671061 AY671064 AY671168 AY671175 AY671183 AY671200 AY671207 AY671220 AY671238 AY671258 AY671268 AY671275 AY671289 AY671290 AY671303 AY671305 AY671696 AY671705 AY671713 AY671722 AY671727 AY671728 S59161 X64152 X64153 X65904 Z47228 Z47234 Z47241 Z75362 Z75374 Z75376 Z75379 Z75386 Z75389 Z75392 Z75394 Z75398 CU674902 CU678316 BC002963 BC073767 CU675962 BC017356 BC019235 BC001872 BC006180 BX538126 AK301454 TSC_hg19_v1_chr14_-_106830060 AK126280 AK128649 AK127921 CR933690	-83227	-	U64504 Z14180 DQ454781 M18509 AF460668 AF460673 AF460675 AF460688 AF460707 AF460760 AF460782 AF460788 DQ454502 DQ100920 EF566906 DQ454582 DQ523854 DQ100716 DQ454403 DQ454402 DQ454906 DQ523890 AY003793 BX640623 DQ454507 DQ454695 DQ454742 DQ523911 EU099159 GQ232763 GQ232780 GQ232864 GQ232888 GU552761 GU552780 DQ454405 DQ454406 DQ454589 AY003801 AY003839 DQ454419 DQ454490 DQ454706 DQ454907 GQ232854 GQ232856 GQ232911 GQ232924 GU552697 AY003712 AY003723 DQ454398 DQ454639 DQ454719 DQ454820 DQ454904 DQ454921 DQ454987 DQ523878 DQ523898 GU552703 AY003789 DQ454393 DQ454414 DQ454460 DQ454473 DQ454496 DQ454497 DQ454503 DQ454590 DQ454624 DQ454678 DQ454694 DQ454845 DQ454864 DQ454869 DQ454974 DQ523914 DQ523916 GU552705 GU552738 GU552768 GU552776 AY003776 AY003811 AY998717 AY003831 DQ454394 DQ454395 DQ454400 DQ454407 DQ454412 DQ454474 DQ454499 DQ454506 DQ454604 DQ454666 DQ454734 DQ454823 DQ454835 DQ454934 DQ454976 DQ455003 DQ455006 DQ523851 DQ523859 DQ523899 AY003735 DQ454597 DQ454844 FJ874077 EF175416 AF004938 DQ454716 DQ523876 FJ840036 FJ840067 FJ840079 FJ840129 FJ840148 FJ840231 FJ840268 FJ873887 FJ873897 FJ873904 FJ873915 FJ873930 FJ873932 FJ873948 FJ873956 FJ873969 FJ873988 FJ873989 FJ874009 FJ874019 FJ874024 FJ874052 FJ874057 FJ874073 AJ008230 AY003803 DQ454836 EF407824 AF103200 AJ487485 EU433876 EU814968 FJ694879 AF103305 FJ694880 DQ524171 EF091915 EF091916 EF175387 EF175401 EF175415 EU350419 EU667605 EU814961 JF810266 JF810269 EF407832 AF103085 AY003859 AY003864 DQ100848 EU090243 EU099132 EU099242 EU099251 EU099260 EU099118 EU099097 EU099122 HQ392876 DQ524166 DQ524169 EU099073 EU099134 EU099139 EU099217 EU099229 EU099240 EU099265 EU099284 AF343360 EU099291 EU099226 AJ002393 AF103298 AF103364 AF103074 AF103080 HM214899 AF103059 TSC_hg19_v1_chr14_-_106791270 AF103084 AF103157 AF103220 AF103317 AF103318 AF103365 U00579 AF103357 HM774788 AF103068 AY062326 AY180387 JN110656 JN110735 JN110757 JN110843 JN110854 L03815 L03823 L03826 L03827 L03828 L03829 L04339 L04346 S49240 FJ385359 FJ385425 GQ504925 HM774036 HM774067 HM774092 HM774095 HM774162 HM774174 HM774347 HM774351 HM774398 HM774443 HM774457 HM774465 HM774539 HM774563 HM774565 HM774593 HM774616 HM774641 HM774647 HM774679 HM774792 HM774794 HM774813 HM774842 HM774881 HM774913 HM774944 HM774955 HM775040 HQ703997 HQ704043 HQ704044 FJ385327 HM774124 AF103044 AF103063 AF103097 AF103138 AF103296 AF103368 HM774710 AF082197 AF103267 EF624221 EU146340 EU146376 DQ100926 AB608263 AF029330 AF485477 AJ233695 AJ233700 AJ233703 AJ233708 AJ300790 AJ300797 AM259131 AM259137 AY960863 DQ100942 L03139 U50344 AF485445 AY062325 AY960870 AF092502 AF485421 AJ132851 AJ300795 AY847516 FJ492935 HM995018 L03163 L38560 HM996250 HM996014 AY423179 AY423181 AY423182 AY423200 X75021 AF035795 AJ245225 AJ245227 AJ245263 AJ245272 DQ431474 DQ431477 DQ431481 DQ431496 DQ431498 DQ431500 DQ431502 DQ431503 DQ431504 DQ431581 DQ431599 DQ431629 DQ431635 DQ431649 DQ431652 HM995402 HM995022 HM996475 DQ109964 DQ109966 AF035021 AF062287 AF062288 AF062302 AJ308462 AJ389191 AY640480 AY941849 AY941855 AY941909 AY941928 AY941961 AY941971 AY941981 AY941984 DQ100679 DQ100699 DQ100757 DQ100938 DQ187599 DQ187600 DQ187608 DQ187648 DQ187710 DQ431659 DQ454487 DQ454488 DQ490738 DQ490740 DQ523943 DQ524050 DQ524136 DQ524162 HM994893 HM994896 HM994917 HM994919 HM994947 HM994954 HM994984 HM994985 HM994986 HM995021 HM995023 HM995024 HM995029 HM995030 HM995032 HM995051 HM995074 HM995075 HM995077 HM995078 HM995079 HM995080 HM995116 HM995119 HM995166 HM995250 HM995337 HM995342 HM995343 HM995344 HM995362 HM995364 HM995394 HM995399 HM995400 HM995404 HM995410 HM995426 HM995432 HM995464 HM995465 HM995469 HM995493 HM995494 HM995497 HM995537 HM995540 HM995567 HM995572 HM995574 HM995576 HM995702 HM995745 HM995951 HM995965 HM995979 HM996084 HM996100 HM996110 HM996139 HM996205 HM996210 HM996212 HM996221 HM996240 HM996242 HM996249 HM996252 HM996260 HM996262 HM996271 HM996418 HM996551 AJ245221 AY640576 DQ187667 DQ187669 DQ187670 DQ187671 DQ187674 DQ187676 DQ187705 DQ187732 DQ187733 DQ322735 DQ322736 DQ322737 DQ322749 DQ322750 DQ322753 DQ322754 DQ322765 DQ322766 DQ322767 DQ322778 DQ322779 DQ322780 DQ322781 DQ322782 DQ322796 DQ322798 DQ322824 DQ322826 DQ322827 DQ322870 DQ322871 DQ322872 DQ322873 DQ322875 DQ322876 DQ322882 DQ322883 DQ322884 DQ322891 DQ322893 DQ322942 DQ322943 DQ322944 DQ322945 DQ322946 DQ322947 DQ322951 DQ322954 DQ322981 DQ323006 DQ323028 DQ840661 DQ840662 DQ840664 DQ840665 DQ840666 DQ840667 DQ840669 DQ840670 DQ840672 DQ840673 DQ840684 DQ840685 DQ840686 DQ840688 DQ840689 DQ840694 DQ840695 DQ840697 DQ840699 DQ840700 DQ840701 DQ840717 DQ840719 DQ840726 DQ840728 DQ840730 DQ840732 DQ840735 DQ840740 DQ840741 DQ840742 DQ840772 DQ840776 DQ840777 DQ840778 DQ840780 DQ840804 DQ840807 DQ840810 DQ840818 DQ840819 DQ840821 DQ840826 DQ840829 DQ840831 DQ840833 DQ840838 DQ840843 DQ840865 DQ840866 DQ840868 DQ840870 DQ840871 DQ840873 DQ840874 DQ840878 DQ840879 DQ840882 DQ840883 DQ840886 DQ840889 DQ840891 DQ840892 DQ840893 DQ840899 DQ840900 DQ840906 DQ840907 DQ840909 DQ840911 DQ840912 DQ840913 DQ840914 DQ840915 DQ840916 DQ840919 DQ840920 AB012909 AB063658 AB063660 AB063698 AB063713 AB063792 AB063798 AB063805 AB063808 AB063830 AB063833 AB063839 AB063842 AB063888 AB063889 AB063893 AB063894 AB063913 AB063915 AB066889 AB066895 AB066988 AB067003 AB067023 AB067071 AB067097 AB067108 AB067236 AB067238 AB067239 AB095272 AB355876 AB363091 AB363100 AB363105 AB363110 AB363112 AB363118 AB363123 AB363124 AB363144 AB363147 AB363157 AB373609 AB373615 AB373618 AB373631 AB373635 AB374184 AB374186 AF035024 AF035030 AF044419 AF044420 AF044422 AF044425 AF044427 AF044442 AF090355 AF099201 AF174074 AF471431 AJ132850 AJ271549 AJ300787 AJ300793 AJ300798 AJ300803 AJ308463 AJ633622 AJ633623 AY028777 AY033265 AY033266 AY033267 AY530317 AY554176 AY640472 AY640475 AY640477 AY640483 AY640501 AY640511 AY640535 AY640539 AY640541 AY640544 AY640549 AY640550 AY640557 AY640558 AY640561 AY640568 AY640569 AY640573 AY640577 AY685306 AY781859 AY846266 AY846267 AY866744 AY941844 AY941856 AY941857 AY941860 AY941863 AY941865 AY941866 AY941868 AY941892 AY941896 AY941898 AY941901 AY941907 AY941913 AY941935 AY941942 AY941950 AY941953 AY941968 AY941970 AY941982 AY941983 AY941985 AY941986 AY941988 AY941989 AY944708 AY944716 AY971015 AY971027 AY971037 AY971078 AY971081 AY971115 AY971120 AY971130 AY971135 DQ065629 DQ065669 DQ065674 DQ065689 DQ065692 DQ065718 DQ065725 DQ431499 DQ431621 DQ431627 DQ840705 DQ840715 DQ840744 DQ926087 DQ926091 DQ926150 DQ926207 DQ926222 DQ926372 DQ926388 DQ926512 DQ926569 DQ926578 DQ926634 EF177978 EF178004 EF178010 EF178073 EF178090 EF178124 EU169674 EU549731 EU794421 FJ195515 FJ385278 FJ385287 FJ385289 FJ385366 FJ481088 FJ492912 GU570325 GU570328 HM047071 Z46771 Z80839 AB021507 AB021508 AB021511 AB021512 AB021513 AB021516 AB021524 AB021531 AB021532 AB021535 AB027433 AB027441 AB030639 AB063789 AB063790 AB063793 AB063802 AB063813 AB063815 AB063900 AB063901 AB084083 AF021942 AF021960 AF021971 AF062116 AF107235 AF115111 AF115121 AF115125 AF115126 AF115127 AF123353 AF123362 AF174093 AF174116 AF174121 AF212993 AF471391 AF471392 AF471394 AF471403 AF471420 AF471424 AF471425 AF471427 AF471428 AF471432 AF471433 AF471435 AF471436 AF471437 AF471438 AF471441 AF471445 AF471446 AF471448 AF471450 AF471457 AJ233701 AJ233705 AJ233707 AJ239331 AJ239332 AJ239336 AJ239349 AJ239361 AJ245258 AJ245265 AJ245268 AJ245270 AJ245273 AJ245274 AJ245275 AJ245276 AJ245280 AJ245282 AJ245286 AJ245287 AJ245288 AJ245289 AJ245290 AJ245291 AJ245292 AJ245293 AJ245301 AJ245302 AJ245303 AJ245304 AJ245306 AJ245307 AJ245308 AJ245309 AJ245315 AJ245316 AJ245342 AJ245347 AJ245350 AJ245351 AJ245357 AJ245358 AJ249376 AJ389171 AJ413996 AJ413997 AJ414012 AJ491904 AJ491905 AJ508768 AJ555253 AJ556715 AJ579099 AJ579110 AJ579114 AJ579139 AJ579144 AJ579145 AJ579146 AJ579147 AJ579148 AJ579151 AJ579152 AJ579154 AJ579158 AJ579193 AJ579194 AJ579199 AJ579220 AJ579230 AJ579276 AJ579279 AJ579284 AJ617572 AJ617575 AJ627229 AJ627230 AJ627232 AJ627235 AJ627239 AJ627243 AJ627244 AJ627245 AM279604 AY033241 AY345918 AY345922 AY543586 AY640536 AY781813 AY781816 AY781879 AY781880 AY781883 AY866854 AY882579 AY927661 AY941847 AY941848 AY941861 AY941864 AY941867 AY941869 AY941871 AY941872 AY941874 AY941875 AY941893 AY941894 AY941895 AY941897 AY941904 AY941908 AY941922 AY941932 AY941933 AY941934 AY941944 AY941946 AY941951 AY941954 AY941956 AY941963 AY941964 AY941966 AY941967 AY941969 AY944690 AY971127 D83678 D83681 D83684 D83685 D83694 DQ005284 DQ065696 DQ100659 DQ100685 DQ100775 DQ100819 DQ100846 DQ100857 DQ100907 DQ100930 DQ212508 DQ212509 DQ431475 DQ431476 DQ431501 DQ431573 DQ431575 DQ431576 DQ431580 DQ431582 DQ431606 DQ431607 DQ431622 DQ431628 DQ431633 DQ431634 DQ431637 DQ431642 DQ431643 DQ431646 DQ431653 DQ431658 DQ535263 DQ535266 DQ535268 DQ535293 DQ535308 DQ535373 DQ535382 DQ535397 DQ535424 DQ535426 DQ535429 DQ535437 DQ535439 DQ535440 DQ535461 DQ535466 DQ840703 DQ840706 DQ840712 DQ840713 DQ840745 DQ840782 DQ840813 DQ923052 DQ926032 DQ926064 DQ926133 DQ926340 DQ926374 DQ926384 DQ926552 EF177969 EF177975 EF177991 EF178015 EF178075 EF178091 EF178098 EF178099 EF221755 EF633749 EF633750 EF633753 EF633754 EF633779 EF633780 EU794440 EU835548 FJ195507 FJ195508 FJ195513 FJ195514 FJ208792 FJ385280 FJ385302 FJ385307 FJ385312 FJ385365 HQ378334 HQ393907 JN234430 JN234435 M85255 S64471 S73507 S80860 U70238 U96391 U96392 X61646 X62961 X62966 X62970 X64238 X72744 X72745 X79169 X79171 X87444 X87459 X87891 X99357 X99358 X99359 Y12720 Y13056 Y15772 Y17139 Z14172 Z18826 Z98730 Z98731 Z98732 Z98733 Z98734 Z98735 Z98736 L03636 AB021514 S73961 HM995878 HM995746 HM995875 HM995879 HQ420175 X69865 M28074 AY392931 AY393061 Z14168 Z14192 L23566 L23568 Z14174 DQ322776 AB159728 AF027159 AF062099 AF062277 AF062281 AY190820 AY190824 AY894992 L03681 L26399 L38427 L38429 M62726 M62728 M62729 M62737 U43757 U43763 X65901 X80305 X81696 X81738 X81745 Z14177 Z80846 CU676522 M81848 Z14204 Z14203 M81847 M34030 M18508 M34026 M34031 M31607 AJ010443 BC019046 CR749861 M18517 BC020240 AK098153 AK093721 AX748278 AK057614 AK097350 AK125633 AK128477 AK128614 AK128658 AK130577 BX538118	-121839	-	GQ232933 AY003798 FJ840151 FJ873995 EF407840 AM279492 AM279629 HM774186 AY957513 EF633772 AY062305 DQ524058 AF174122 AY944701 DQ065664 DQ065670 DQ065719 DQ065726 DQ926522 EF178118 EF633803 FJ385316 GU570332 HM995173 HM995251 HM995315 HM995321 HM995523 AB021518 AB021527 AF035043 AF471473 AJ579183 DQ535349 DQ535444 GU570331 GU570333 X95661 Z47231 BC092518 TSC_hg19_v1_chr14_-_106926725 BX647160 AK123783 AK097306 AK097329	13426	-	AK058096 TSC_hg19_v1_chr14_+_106938444 BX248748	25325	+	AF267810 AJ437675 AF460791 DQ454635 DQ454884 DQ454865 AY003769 DQ454594 GQ232992 AY003745 DQ454832 GQ232765 AJ487487 EF175435 EF407821 GQ232961 EF441745 HM995164 AF211927 AJ007324 Y11325 EU620026 HM775060 AF103302 GQ232964 L33027 AF103133 AY393603 AF103050 FJ385397 HM774702 HM774015 HM774234 JN110957 EU099230 Z46851 FJ385343 FJ385415 HM773990 HM774046 HM774271 HM774309 HM774755 HM774756 HM774760 HM774764 HM774779 HM774783 HM774818 HM774827 HM774854 HM774920 HM774972 HM775016 HQ704041 AF103336 AF008566 EU099186 AY062327 EF624219 EU099222 EU146311 AY392845 AY392853 AY392861 AY393021 AY393022 AY393105 AY393109 AY393112 AY393117 AY393118 AY393119 AY393120 AY393126 AY393129 AY393132 AY393340 AY393626 AY393630 AY393647 AY393665 AY393668 AY393680 DQ926548 EF178065 AY885180 AJ555255 AF103269 GU570259 DQ524005 DQ524026 DQ524034 DQ524051 DQ524111 DQ524118 DQ524130 DQ524137 HM994931 HM994936 HM994937 HM995039 HM995040 HM995041 HM995076 HM995081 HM995161 HM995163 HM995167 HM995169 HM995170 HM995171 HM995199 HM995200 HM995268 HM995269 HM995271 HM995273 HM995275 HM995276 HM995328 HM995329 HM995338 HM995339 HM995340 HM995341 HM995489 HM995555 HM995581 HM995584 HM995825 HQ378379 FJ195581 AB063827 AB066880 AB066986 AB067101 AF035022 AF174075 AF455923 AY033271 AY033272 AY686900 AY686901 AY686904 AY686905 AY686914 AY686934 AY686936 AY882008 AY944697 AY944705 AY944706 AY944712 AY955068 DQ065671 DQ100732 DQ926199 DQ926325 DQ926442 DQ926564 DQ926601 DQ926652 EF177961 EF177968 EF177981 EF177982 EF177999 EF178001 EF178007 EF178027 EF178055 EF178063 EF178077 FJ195457 FJ195459 FJ195473 FJ195584 FJ195585 FJ195588 FJ195589 FJ195591 FJ773243 GU570252 AB063685 AB063709 AB066828 AB066927 AB066941 AB066965 AB067153 AB067164 AB067173 AB067312 AB067313 AB067321 AB067323 AB067325 AB067379 AB114449 AB114451 AB114458 AB289326 AF006519 AF021940 AF021974 AF062160 AF115128 AF174039 AF359365 AJ272399 AJ413988 AY165858 AY781814 AY781869 AY885174 AY971019 AY971047 AY971049 AY971069 DQ100812 DQ205160 DQ926068 DQ926243 DQ926567 GU570249 GU570251 GU570255 GU570258 HM152508 HQ378325 HQ378393 JN158507 JN158798 JN159083 JN159296 JN159297 L43089 U00492 U00559 X79159 X99367 Z92890 Z95481 Z97033 AY686893 AY686903 AY686911 AY686917 AY686920 AY686923 AY944689 AY944691 AY944699 AY944700 DQ535291 DQ535411 DQ535431 EF177955 EF177972 EF177994 EF177995 EF178000 EF178008 EF178012 EF178057 EF178058 EF178070 FJ195460 FJ195461 FJ195465 FJ195476 FJ195570 FJ195573 FJ195574 FJ195576 FJ195577 FJ195578 FJ195579 FJ195582 FJ195583 FJ195590 AF062145 AY392862 AY392875 L02325 S77600 U43756 X65884 X65886 Z11957 Z47230 CU676428 L23560 M26463 BX640621 TSC_hg19_v1_chr14_-_106967517 AY039026 BC019337	54167	-	AK057754|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK057775|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK130529|IGHA1|3493|immunoglobulin heavy constant alpha 1##BC025985|IGHG4|3503|immunoglobulin heavy constant gamma 4 (G4m marker)##BX640824|IGHG4|3503|immunoglobulin heavy constant gamma 4 (G4m marker)##AK126352|IGH@|3492|immunoglobulin heavy locus##AK129514|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK129592|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK129637|IGHM|3507|immunoglobulin heavy constant mu##AK130589|IGHV4-31|28396|immunoglobulin heavy variable 4-31##AK130611|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC016369|IGHA1|3493|immunoglobulin heavy constant alpha 1##BX538077|IGHA2|3494|immunoglobulin heavy constant alpha 2 (A2m marker)##AK095222|IGHA1|3493|immunoglobulin heavy constant alpha 1##AF174049|SKAP2|8935|src kinase associated phosphoprotein 2##BC002963|IGHM|3507|immunoglobulin heavy constant mu##BC073767|IGHM|3507|immunoglobulin heavy constant mu##BC017356|IGHM|3507|immunoglobulin heavy constant mu##BC019235|IGHM|3507|immunoglobulin heavy constant mu##BC001872|IGHM|3507|immunoglobulin heavy constant mu##BC006180|IGHM|3507|immunoglobulin heavy constant mu##BX538126|IGHG3|3502|immunoglobulin heavy constant gamma 3 (G3m marker)##AK126280|IGHD|3495|immunoglobulin heavy constant delta##AK128649|IGHD|3495|immunoglobulin heavy constant delta##AK127921|IGHA1|3493|immunoglobulin heavy constant alpha 1##BX640623|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##AF035024|IGHV3-30|28439|immunoglobulin heavy variable 3-30##Y13056|SCFV|652070|single-chain Fv fragment##AY894992|IGHV4-31|28396|immunoglobulin heavy variable 4-31##BC019046|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##CR749861|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##BC020240|IGHM|3507|immunoglobulin heavy constant mu##AK098153|IGHG3|3502|immunoglobulin heavy constant gamma 3 (G3m marker)##AK093721|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK125633|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK128614|IGHD|3495|immunoglobulin heavy constant delta##AK128658|IGHD|3495|immunoglobulin heavy constant delta##AK130577|IGHM|3507|immunoglobulin heavy constant mu##BX538118|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC092518|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK123783|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK097329|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK058096|LINC00221|338005|long intergenic non-protein coding RNA 221##BX248748|LINC00221|338005|long intergenic non-protein coding RNA 221##BX640621|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC019337|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)	2.962397	0.0	denovo_WM_7:44:0.445	denovo_WM_7:45:0.380	denovo_WM_7:77:0.355	denovo_WM_7:78:0.640	denovo_WM_7:92:0.237	denovo_WM_7:93:0.756
chr3	27137265	27137396	reg1004993.p1	6.397	+	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-473030	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1305750	+	AK296047 NM_001145294	-1305818	-	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	273583	-	AF047033 AF089726 NM_003615	360914	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	388495	-	BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK296047|NGLY1|55768|N-glycanase 1##NM_001145294|NGLY1|55768|N-glycanase 1##AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.988592	0.0	denovo_WM_7:-39:0.811
chr1	155517454	155517634	reg1005043.p4	6.396	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-223252	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-223602	-	BC052277 NM_001105205	-223817	+	AF257305 TSC_hg19_v1_chr1_-_155532251	14662	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	14823	-	TSC_hg19_v1_chr1_-_155532562 AK307595	15037	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.383212	0.0	denovo_WM_7:63:0.213
chr22	45559786	45559922	reg1006227.p3	6.396	+	NM_007172 TSC_hg19_v1_chr22_+_45559808	-83	+	TSC_hg19_v1_chr22_-_45405781 AK092243 AX747427 NM_001135862	-154060	-	AB489146 CU012999 CU013287 CU680262 CR456448 BC012187 NM_138415	-154350	-	TSC_hg19_v1_chr22_+_45559866 AK314454 BC070133	12	+	AK304223 TSC_hg19_v1_chr22_+_45559883 BC016055 AF107840 AL389949 AL389950	166	+	TSC_hg19_v1_chr22_+_45560534 BC028125 NM_153645	686	+	NM_007172|NUP50|10762|nucleoporin 50kDa##AK092243|PHF21B|112885|PHD finger protein 21B##NM_001135862|PHF21B|112885|PHD finger protein 21B##CU012999|PHF21B|112885|PHD finger protein 21B##CU013287|PHF21B|112885|PHD finger protein 21B##CR456448|PHF21B|112885|PHD finger protein 21B##BC012187|PHF21B|112885|PHD finger protein 21B##NM_138415|PHF21B|112885|PHD finger protein 21B##AK314454|NUP50|10762|nucleoporin 50kDa##BC070133|NUP50|10762|nucleoporin 50kDa##AK304223|NUP50|10762|nucleoporin 50kDa##BC016055|NUP50|10762|nucleoporin 50kDa##AF107840|NUP50|10762|nucleoporin 50kDa##AL389949|NUP50|10762|nucleoporin 50kDa##AL389950|NUP50|10762|nucleoporin 50kDa##BC028125|NUP50|10762|nucleoporin 50kDa##NM_153645|NUP50|10762|nucleoporin 50kDa	0.0	0.010271	
chrX	100176704	100176805	reg1007180.p2	6.396	+	AJ438989 DQ424904 BC075014 BC075015 AF166326 AF166327 AF166328 AK313678 AK292201 AF127763 NM_007052 NM_013955 TSC_hg19_v1_chrX_-_100129349	-47516	-	EU616679 M85085 TSC_hg19_v1_chrX_+_100075384 BC017712 AK095684 AK300600 DQ891532 DQ894721 AB528418 BT009778 BC033135	-101359	+	NM_001325 TSC_hg19_v1_chrX_+_100075379	-101390	+	AY589511 NM_212559	7143	-	AK301813 NM_001012990 NM_001162490 NM_001162491	47942	+	AK315780 TSC_hg19_v1_chrX_-_100306914 AK022749	130135	-	AJ438989|NOX1|27035|NADPH oxidase 1##DQ424904|NOX1|27035|NADPH oxidase 1##BC075014|NOX1|27035|NADPH oxidase 1##BC075015|NOX1|27035|NADPH oxidase 1##AF166326|NOX1|27035|NADPH oxidase 1##AF166327|NOX1|27035|NADPH oxidase 1##AF166328|NOX1|27035|NADPH oxidase 1##AK313678|NOX1|27035|NADPH oxidase 1##AK292201|NOX1|27035|NADPH oxidase 1##AF127763|NOX1|27035|NADPH oxidase 1##NM_007052|NOX1|27035|NADPH oxidase 1##NM_013955|NOX1|27035|NADPH oxidase 1##EU616679|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##M85085|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##BC017712|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##AK095684|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##AK300600|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##DQ891532|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##DQ894721|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##BT009778|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##BC033135|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##NM_001325|CSTF2|1478|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa##AY589511|XKRX|402415|XK, Kell blood group complex subunit-related, X-linked##NM_212559|XKRX|402415|XK, Kell blood group complex subunit-related, X-linked##AK301813|ARL13A|392509|ADP-ribosylation factor-like 13A##NM_001012990|ARL13A|392509|ADP-ribosylation factor-like 13A##NM_001162490|ARL13A|392509|ADP-ribosylation factor-like 13A##NM_001162491|ARL13A|392509|ADP-ribosylation factor-like 13A##AK315780|TRMT2B|79979|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)##AK022749|TRMT2B|79979|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	1.257965	0.0	denovo_WM_7:65:0.251	denovo_WM_7:80:0.241
chr12	125903625	125903789	reg1006821.p2	6.395	+	NM_052907	-92546	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-353639	+	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	-353766	+	NM_001136103	2848240	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	3404736	-	BC043528 TSC_hg19_v1_chr12_+_129337985	3434277	+	NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##NM_001136103|TMEM132C|92293|transmembrane protein 132C##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1	0.0	0.0	
chr20	47448615	47448733	reg1006847.p1	6.394	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-4235	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-4388	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1033356	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	89644	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	214152	+	TSC_hg19_v1_chr20_+_47662875 AF053640	214214	+	AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)	1.258675	0.0	denovo_WM_7:8:0.275	denovo_WM_7:-19:0.984
chr12	121104256	121104414	reg1002900.p2	6.393	+	AF169148 AF169149 NM_004276 NM_031205	-15965	+	BC030201 NM_001033677	-25914	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	-85147	-	TSC_hg19_v1_chr12_+_121124951 NM_014730	20603	+	TSC_hg19_v1_chr12_+_121124973 D63486 BC016297 BC000371	20704	+	CR936818 TSC_hg19_v1_chr12_+_121132759	28383	+	AF169148|CABP1|9478|calcium binding protein 1##AF169149|CABP1|9478|calcium binding protein 1##NM_004276|CABP1|9478|calcium binding protein 1##NM_031205|CABP1|9478|calcium binding protein 1##BC030201|CABP1|9478|calcium binding protein 1##NM_001033677|CABP1|9478|calcium binding protein 1##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_014730|MLEC|9761|malectin##D63486|MLEC|9761|malectin##BC016297|MLEC|9761|malectin##BC000371|MLEC|9761|malectin	0.996848	0.0	
chr19	50964613	50964727	reg1007275.p2	6.393	+	BC094690 NM_004533 BC130536 BC136389 X73113 HQ258536	-28486	+	AK225720 NM_001243998 NM_001243999 NM_001244000 NM_003121 TSC_hg19_v1_chr19_+_50922194 AK225225 AK292644 AK300639 EU446656 X66079 X96998 BC007921	-42466	+	NM_002691 TSC_hg19_v1_chr19_+_50887592 M80397 M81735 BC008800	-77066	+	AK131032 BC004941 TSC_hg19_v1_chr19_-_50979494 BC012203 AK125745	14839	-	BC062607 TSC_hg19_v1_chr19_+_50979762 NM_175063 NM_206538 AY761095 AY761097	15039	+	TSC_hg19_v1_chr19_+_50979781 AY358710	15106	+	NM_004533|MYBPC2|4606|myosin binding protein C, fast type##BC130536|MYBPC2|4606|myosin binding protein C, fast type##BC136389|MYBPC2|4606|myosin binding protein C, fast type##X73113|MYBPC2|4606|myosin binding protein C, fast type##HQ258536|MYBPC2|4606|myosin binding protein C, fast type##AK225720|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##NM_001243998|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##NM_001243999|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##NM_001244000|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##NM_003121|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##AK225225|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##AK292644|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##AK300639|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##EU446656|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##X66079|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##X96998|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##BC007921|SPIB|6689|Spi-B transcription factor (Spi-1/PU.1 related)##NM_002691|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M80397|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M81735|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##BC008800|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##AK131032|FAM71E1|112703|family with sequence similarity 71, member E1##BC004941|FAM71E1|112703|family with sequence similarity 71, member E1##BC012203|FAM71E1|112703|family with sequence similarity 71, member E1##AK125745|FAM71E1|112703|family with sequence similarity 71, member E1##BC062607|C19orf63|284361|chromosome 19 open reading frame 63##NM_175063|C19orf63|284361|chromosome 19 open reading frame 63##NM_206538|C19orf63|284361|chromosome 19 open reading frame 63##AY761095|C19orf63|284361|chromosome 19 open reading frame 63##AY761097|C19orf63|284361|chromosome 19 open reading frame 63##AY358710|C19orf63|284361|chromosome 19 open reading frame 63	0.0	0.823085	CTCF.p2:-18:0.823
chr5	157025037	157025190	reg1007105.p1	6.393	+	AF311317 AF326918 TSC_hg19_v1_chr5_-_157002784 Y13786 AK091464 AK308182 AX747000 NM_033274	-22308	-	AB462931 TSC_hg19_v1_chr5_-_157002728	-22397	-	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	-137843	+	AB527685 TSC_hg19_v1_chr5_-_157079170	54015	-	AB022083 AB022441 AK308329 AK225861 BC033492 NM_007017 NM_178424	54286	-	BC035142 AK055284 TSC_hg19_v1_chr5_-_157098473 AK302162	73352	-	AF311317|ADAM19|8728|ADAM metallopeptidase domain 19##AF326918|ADAM19|8728|ADAM metallopeptidase domain 19##Y13786|ADAM19|8728|ADAM metallopeptidase domain 19##AK091464|ADAM19|8728|ADAM metallopeptidase domain 19##AK308182|ADAM19|8728|ADAM metallopeptidase domain 19##NM_033274|ADAM19|8728|ADAM metallopeptidase domain 19##AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4##AB022083|SOX30|11063|SRY (sex determining region Y)-box 30##AB022441|SOX30|11063|SRY (sex determining region Y)-box 30##AK308329|SOX30|11063|SRY (sex determining region Y)-box 30##BC033492|SOX30|11063|SRY (sex determining region Y)-box 30##NM_007017|SOX30|11063|SRY (sex determining region Y)-box 30##NM_178424|SOX30|11063|SRY (sex determining region Y)-box 30##AK302162|SOX30|11063|SRY (sex determining region Y)-box 30	1.013123	0.039904	denovo_WM_7:-41:0.951
chr6	27720749	27720876	reg1007230.p1	6.393	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-280111	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-364257	+	AF352327 AF336874 BC107050 NM_032030	-428254	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	54911	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	55129	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	56970	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.999414	0.0	
chr10	104814010	104814132	reg1005792.p2	6.392	+	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	-136014	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-184814	+	NM_001136200 NM_144591 AL832477 TSC_hg19_v1_chr10_+_104614015 AK098071 BC015994 BC040069 AK311742	-200070	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	138976	-	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	191602	+	TSC_hg19_v1_chr10_+_105036894 BC006359 NM_032727 S78296 DQ892733 DQ895980	222802	+	BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##NM_001136200|C10orf32|119032|chromosome 10 open reading frame 32##NM_144591|C10orf32|119032|chromosome 10 open reading frame 32##AL832477|C10orf32|119032|chromosome 10 open reading frame 32##AK098071|C10orf32|119032|chromosome 10 open reading frame 32##BC015994|C10orf32|119032|chromosome 10 open reading frame 32##BC040069|C10orf32-AS3MT|100528007|C10orf32-AS3MT readthrough##AK311742|C10orf32|119032|chromosome 10 open reading frame 32##BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE##BC006359|INA|9118|internexin neuronal intermediate filament protein, alpha##NM_032727|INA|9118|internexin neuronal intermediate filament protein, alpha##S78296|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ892733|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ895980|INA|9118|internexin neuronal intermediate filament protein, alpha	0.903253	0.0	denovo_WM_7:-13:0.218	denovo_WM_7:-14:0.482
chr11	67797619	67797756	reg1005666.p2	6.392	+	TSC_hg19_v1_chr11_+_67777796 AK092029 AX747322 U10868 BC013584 BC033099	-19872	+	TSC_hg19_v1_chr11_+_67777790 NM_000694 NM_001030010 BC002553 AK291505	-19897	+	TSC_hg19_v1_chr11_+_67776039 EF411198 NM_001161473	-21656	+	TSC_hg19_v1_chr11_+_67798158 AK302449 NM_002496 AK223114 BC119753 BC119754 AK314546 U65579 AK002110	471	+	TSC_hg19_v1_chr11_+_67806477 NM_006019 BC018133 BC032465	8785	+	TSC_hg19_v1_chr11_+_67806519 U45285 AY548967	8857	+	AK092029|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##U10868|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC013584|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC033099|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_000694|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001030010|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC002553|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK291505|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##EF411198|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001161473|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK302449|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##NM_002496|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK223114|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##BC119753|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##BC119754|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK314546|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##U65579|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##AK002110|NDUFS8|4728|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)##NM_006019|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC018133|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC032465|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##U45285|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##AY548967|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3	1.99379	0.0	denovo_WM_7:-83:0.566	denovo_WM_7:-98:0.400	denovo_WM_7:-101:0.418
chr3	101532726	101532862	reg1006383.p1	6.392	+	AK289689 NM_001134456	-34509	+	TSC_hg19_v1_chr3_+_101498080 BC009431	-34706	+	NM_145037 TSC_hg19_v1_chr3_+_101498054	-34746	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	14166	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	35580	+	AY090780 NM_175056 BC143817	621073	+	AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C##NM_145037|FAM55C|91775|family with sequence similarity 55, member C##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1	0.0	0.392435	CTCF.p2:-36:0.392
chr6	39949147	39949327	reg1000109.p2	6.392	+	TSC_hg19_v1_chr6_-_39902202 AK300300 AF034374 AK091306 AK056740 NM_001075098	-47023	-	AB527188 AJ224328 NM_005943	-53852	-	NM_015345 AL833083 BC128388	-188419	+	BC142616 AB033072 NM_020737 AK291474	605907	-	BC035284 NM_173561 TSC_hg19_v1_chr6_-_41006954	1057712	-	NM_001010873 BC104440 BC104441 BC137560 BC137565 BC144710 NM_001159726	1061109	+	AK300300|MOCS1|4337|molybdenum cofactor synthesis 1##AF034374|MOCS1|4337|molybdenum cofactor synthesis 1##AK091306|MOCS1|4337|molybdenum cofactor synthesis 1##AK056740|MOCS1|4337|molybdenum cofactor synthesis 1##NM_001075098|MOCS1|4337|molybdenum cofactor synthesis 1##AJ224328|MOCS1|4337|molybdenum cofactor synthesis 1##NM_005943|MOCS1|4337|molybdenum cofactor synthesis 1##NM_015345|DAAM2|23500|dishevelled associated activator of morphogenesis 2##AL833083|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC128388|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC142616|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AB033072|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##NM_020737|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK291474|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##BC035284|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_173561|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_001010873|TSPO2|222642|translocator protein 2##BC104440|TSPO2|222642|translocator protein 2##BC104441|TSPO2|222642|translocator protein 2##BC137560|TSPO2|222642|translocator protein 2##BC137565|TSPO2|222642|translocator protein 2##BC144710|TSPO2|222642|translocator protein 2##NM_001159726|TSPO2|222642|translocator protein 2	0.0	0.0	
chr11	64836661	64836823	reg1006184.p2	6.391	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	-10740	-	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	-28324	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	-28361	+	DQ893251 DQ896580 TSC_hg19_v1_chr11_-_64851515 BC011000 AK291490	14758	-	TSC_hg19_v1_chr11_-_64851564 NM_080668	14843	-	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	14964	+	AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##NM_013299|SAC3D1|29901|SAC3 domain containing 1##DQ893251|CDCA5|113130|cell division cycle associated 5##DQ896580|CDCA5|113130|cell division cycle associated 5##BC011000|CDCA5|113130|cell division cycle associated 5##AK291490|CDCA5|113130|cell division cycle associated 5##NM_080668|CDCA5|113130|cell division cycle associated 5##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1	0.999544	0.0	
chr17	4103236	4103367	reg1006176.p1	6.391	+	TSC_hg19_v1_chr17_+_4046995 AK313088 AK172844 BC020263 CU690822 DQ891696 DQ894877	-56292	+	TSC_hg19_v1_chr17_+_4046490 NM_144611 BC051697	-56818	+	TSC_hg19_v1_chr17_-_4046308 AK127482	-56991	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	63850	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	166410	-	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	166607	-	AK313088|CYB5D2|124936|cytochrome b5 domain containing 2##AK172844|CYB5D2|124936|cytochrome b5 domain containing 2##BC020263|CYB5D2|124936|cytochrome b5 domain containing 2##DQ891696|CYB5D2|124936|cytochrome b5 domain containing 2##DQ894877|CYB5D2|124936|cytochrome b5 domain containing 2##NM_144611|CYB5D2|124936|cytochrome b5 domain containing 2##BC051697|CYB5D2|124936|cytochrome b5 domain containing 2##AK127482|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1	0.995187	0.910464	CTCF.p2:13:0.910	denovo_WM_7:64:0.485	denovo_WM_7:65:0.478
chr20	47439473	47439625	reg1006589.p1	6.391	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1024231	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-1024797	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-1308865	+	AB037836 TSC_hg19_v1_chr20_-_47444291	4737	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	4890	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	98769	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.573024	0.0	denovo_WM_7:-17:0.361
chr7	77330367	77330508	reg1003094.p1	6.391	+	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	-4680	+	TSC_hg19_v1_chr7_-_77325573 BC037783	-4876	-	AK303602 NM_001131008 NM_001131009 AK296764	-163069	+	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	97231	-	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	97310	-	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	97704	+	NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##AK303602|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131009|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK296764|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2	1.297615	0.0	denovo_WM_7:70:0.207
chr1	112242021	112242152	reg1006057.p1	6.389	+	TSC_hg19_v1_chr1_+_112162449 NM_001010935 NM_002884 BC014086	-79619	+	BC041707 BC064411 NM_001081976	-135507	-	NM_000677 NM_020683	-195344	-	AB528568 CU689180 AL137198 AK295012 BC031558 TSC_hg19_v1_chr1_-_112282012 AK055667 NM_019099	39869	-	TSC_hg19_v1_chr1_+_112298189 NM_007204 BC034953 AF171063	56133	+	AL137199 NM_198926 AK293989 TSC_hg19_v1_chr1_-_112298450	56349	-	NM_001010935|RAP1A|5906|RAP1A, member of RAS oncogene family##NM_002884|RAP1A|5906|RAP1A, member of RAS oncogene family##BC014086|RAP1A|5906|RAP1A, member of RAS oncogene family##BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##AL137198|FAM212B|55924|family with sequence similarity 212, member B##AK295012|FAM212B|55924|family with sequence similarity 212, member B##BC031558|FAM212B|55924|family with sequence similarity 212, member B##AK055667|FAM212B|55924|family with sequence similarity 212, member B##NM_019099|FAM212B|55924|family with sequence similarity 212, member B##NM_007204|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC034953|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF171063|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AL137199|FAM212B|55924|family with sequence similarity 212, member B##NM_198926|FAM212B|55924|family with sequence similarity 212, member B##AK293989|FAM212B|55924|family with sequence similarity 212, member B	0.998539	0.0	denovo_WM_7:7:0.449	denovo_WM_7:8:0.449
chr15	41624890	41625021	reg1006640.p2	6.388	+	NM_001243142 NM_001243143 NM_001243144 NM_016359 NM_018454	-64	+	TSC_hg19_v1_chr15_-_41624771 AF025441 BC015050 NM_007280	-166	-	TSC_hg19_v1_chr15_+_41576202 BC037835 BX647764 AK172729 AY007106	-48765	+	AK307728 AK222819 AK290879 AK293168 BC011008 AF217513 TSC_hg19_v1_chr15_+_41625080 AK225703 AL833611 AK023483 BC024772 AF090915 AF290612 BC001308 BC012887	126	+	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	210	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	69707	-	NM_001243142|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243143|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_001243144|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_016359|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_018454|NUSAP1|51203|nucleolar and spindle associated protein 1##AF025441|OIP5|11339|Opa interacting protein 5##BC015050|OIP5|11339|Opa interacting protein 5##NM_007280|OIP5|11339|Opa interacting protein 5##BC037835|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##BX647764|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK172729|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AY007106|OIP5-AS1|729082|OIP5 antisense RNA 1 (non-protein coding)##AK307728|NUSAP1|51203|nucleolar and spindle associated protein 1##AK222819|NUSAP1|51203|nucleolar and spindle associated protein 1##AK290879|NUSAP1|51203|nucleolar and spindle associated protein 1##AK293168|NUSAP1|51203|nucleolar and spindle associated protein 1##BC011008|NUSAP1|51203|nucleolar and spindle associated protein 1##AF217513|NUSAP1|51203|nucleolar and spindle associated protein 1##AK225703|NUSAP1|51203|nucleolar and spindle associated protein 1##AL833611|NUSAP1|51203|nucleolar and spindle associated protein 1##AK023483|NUSAP1|51203|nucleolar and spindle associated protein 1##BC024772|NUSAP1|51203|nucleolar and spindle associated protein 1##AF090915|NUSAP1|51203|nucleolar and spindle associated protein 1##AF290612|NUSAP1|51203|nucleolar and spindle associated protein 1##BC001308|NUSAP1|51203|nucleolar and spindle associated protein 1##BC012887|NUSAP1|51203|nucleolar and spindle associated protein 1##AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	0.0	0.0	
chr8	116680467	116680596	reg1005844.p1	6.388	+	TSC_hg19_v1_chr8_-_116680208 AK304046	-311	-	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-2231402	-	AB114605 NM_198124	-2291150	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	634	-	TSC_hg19_v1_chr8_-_116681365 AF183810	804	-	TSC_hg19_v1_chr8_-_117768041 BC000386 BT019594 CR456906 CU674186 AK222620 U54559 BC090880	1087506	-	AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I##BC000386|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##BT019594|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##CR456906|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##AK222620|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##U54559|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##BC090880|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H	1.090558	0.0	
chr16	19386993	19387115	reg1007903.p1	6.387	+	TSC_hg19_v1_chr16_+_19179561 NM_016524 BC004518 AF220560 AB527504 CU678742	-207303	+	TSC_hg19_v1_chr16_+_19125253 AK096327 NM_001034841	-261806	+	TSC_hg19_v1_chr16_+_19079232 AL136647 NM_001190983 BC043272	-307789	+	BC070101 NM_001105248 NM_001105249	35002	+	AY236494 NM_024780 BC038118 AK097718 BC027602 AK131202	80750	+	AY463154 BC014981 TSC_hg19_v1_chr16_-_19533421 AF306698 BC025273 BC001538 AF212862 BC012153 AK312912 NM_016641	146322	-	NM_016524|SYT17|51760|synaptotagmin XVII##BC004518|SYT17|51760|synaptotagmin XVII##AF220560|SYT17|51760|synaptotagmin XVII##AK096327|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##NM_001034841|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##AL136647|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_001190983|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC043272|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC070101|TMC5|79838|transmembrane channel-like 5##NM_001105248|TMC5|79838|transmembrane channel-like 5##NM_001105249|TMC5|79838|transmembrane channel-like 5##AY236494|TMC5|79838|transmembrane channel-like 5##NM_024780|TMC5|79838|transmembrane channel-like 5##BC038118|TMC5|79838|transmembrane channel-like 5##AK097718|TMC5|79838|transmembrane channel-like 5##BC027602|TMC5|79838|transmembrane channel-like 5##AK131202|TMC5|79838|transmembrane channel-like 5##AY463154|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC014981|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF306698|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC025273|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC001538|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF212862|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC012153|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AK312912|GDE1|51573|glycerophosphodiester phosphodiesterase 1##NM_016641|GDE1|51573|glycerophosphodiester phosphodiesterase 1	0.012794	0.874675	CTCF.p2:48:0.875
chr17	40730483	40730642	reg1007015.p1	6.387	+	TSC_hg19_v1_chr17_-_40729727 AB528689 GQ851964 GQ851965 AF440240 AB030304 NM_013290 NM_016556 FJ952179 FJ952180 FJ952181 FJ952182 FJ952183 BC008792	-814	-	TSC_hg19_v1_chr17_+_40719130 AF203978 AK314378 AB527756 BT009812	-11424	+	TSC_hg19_v1_chr17_+_40719119 NM_170607 NM_198204 NM_198205 AF213666 AF213667 AF213668 BC010689 AK290258 AK296114 BC014537 AK000150 AK303221 AK309628 AK315432	-11466	+	BX647175 CU690614 TSC_hg19_v1_chr17_-_40761363	30789	-	NM_001070	30795	+	TSC_hg19_v1_chr17_-_40761382 AK294791	30813	-	GQ851964|PSMC3IP|29893|PSMC3 interacting protein##GQ851965|PSMC3IP|29893|PSMC3 interacting protein##AF440240|PSMC3IP|29893|PSMC3 interacting protein##AB030304|PSMC3IP|29893|PSMC3 interacting protein##NM_013290|PSMC3IP|29893|PSMC3 interacting protein##NM_016556|PSMC3IP|29893|PSMC3 interacting protein##FJ952179|PSMC3IP|29893|PSMC3 interacting protein##FJ952180|PSMC3IP|29893|PSMC3 interacting protein##FJ952181|PSMC3IP|29893|PSMC3 interacting protein##FJ952182|PSMC3IP|29893|PSMC3 interacting protein##FJ952183|PSMC3IP|29893|PSMC3 interacting protein##BC008792|PSMC3IP|29893|PSMC3 interacting protein##AF203978|MLX|6945|MAX-like protein X##AK314378|MLX|6945|MAX-like protein X##BT009812|MLX|6945|MAX-like protein X##NM_170607|MLX|6945|MAX-like protein X##NM_198204|MLX|6945|MAX-like protein X##NM_198205|MLX|6945|MAX-like protein X##AF213666|MLX|6945|MAX-like protein X##AF213667|MLX|6945|MAX-like protein X##AF213668|MLX|6945|MAX-like protein X##BC010689|MLX|6945|MAX-like protein X##AK290258|MLX|6945|MAX-like protein X##AK296114|MLX|6945|MAX-like protein X##BC014537|MLX|6945|MAX-like protein X##AK000150|MLX|6945|MAX-like protein X##AK303221|MLX|6945|MAX-like protein X##AK309628|MLX|6945|MAX-like protein X##AK315432|MLX|6945|MAX-like protein X##BX647175|FAM134C|162427|family with sequence similarity 134, member C##NM_001070|TUBG1|7283|tubulin, gamma 1##AK294791|FAM134C|162427|family with sequence similarity 134, member C	0.997353	0.0	denovo_WM_7:-25:0.349	denovo_WM_7:-26:0.364
chr1	93646320	93646500	reg1000230.p1	6.387	+	TSC_hg19_v1_chr1_+_93646280 BC056667 NM_206886	-129	+	BC070051 NM_001167830 NM_016040	-165	-	AY359039 BC016556 AF151858 TSC_hg19_v1_chr1_-_93645971 AK293308 BC016365 AK312787 CR936808 AK125882	-423	-	TSC_hg19_v1_chr1_-_93811348 Z36846 AL832786	164942	-	AK223442 TSC_hg19_v1_chr1_+_93811463	165053	+	TSC_hg19_v1_chr1_+_93811479 BC035507 NM_001938 BC068553	165068	+	BC056667|CCDC18|343099|coiled-coil domain containing 18##NM_206886|CCDC18|343099|coiled-coil domain containing 18##BC070051|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_001167830|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_016040|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AY359039|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016556|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AF151858|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK293308|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016365|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK312787|TMED5|50999|transmembrane emp24 protein transport domain containing 5##CR936808|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK125882|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AL832786|LOC100131564|100131564|uncharacterized LOC100131564##AK223442|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##BC035507|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##NM_001938|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##BC068553|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)	0.0	0.0	
chr2	225786960	225787140	reg1002471.p2	6.386	+	TSC_hg19_v1_chr2_-_225450116 NM_003590	-336930	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-336975	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	-337009	-	TSC_hg19_v1_chr2_-_225811768 EU236710	24704	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	120298	-	NM_020864 BC131727 AB040919	478595	+	NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##EU236710|DOCK10|55619|dedicator of cytokinesis 10##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	0.0	0.0	
chr1	118745084	118745226	reg1004369.p1	6.384	+	AB527095 AK091816 AX747199 AY555274 BX648110 NM_206996	-17342	-	TSC_hg19_v1_chr1_+_118472364 NM_006784 AK292438 AF083217 BC128385 BC128454 BC148244	-272777	+	BC058836 TSC_hg19_v1_chr1_+_118472357	-272802	+	AK127536 NM_152380	787023	-	TSC_hg19_v1_chr1_+_119683039 BC063600 BC043601	937871	+	TSC_hg19_v1_chr1_-_119683274 BC021722 CU692202 BC039889 AK223197 AJ242739 AK296799 BC044575 AK313740 AK300295 NM_015836 NM_201263	938114	-	AK091816|SPAG17|200162|sperm associated antigen 17##AY555274|SPAG17|200162|sperm associated antigen 17##BX648110|SPAG17|200162|sperm associated antigen 17##NM_206996|SPAG17|200162|sperm associated antigen 17##NM_006784|WDR3|10885|WD repeat domain 3##AK292438|WDR3|10885|WD repeat domain 3##AF083217|WDR3|10885|WD repeat domain 3##BC058836|WDR3|10885|WD repeat domain 3##AK127536|TBX15|6913|T-box 15##NM_152380|TBX15|6913|T-box 15##BC021722|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC039889|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK223197|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AJ242739|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK296799|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC044575|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK313740|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK300295|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_015836|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_201263|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial	2.063921	0.0	denovo_WM_7:28:0.794	denovo_WM_7:43:0.881
chr17	5103625	5103805	reg1002578.p1	6.384	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-8335	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-8542	-	AY143550 NM_004505 X63546 X63547	-72029	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	34386	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	81951	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	219210	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.982623	0.0	denovo_WM_7:-47:0.408	denovo_WM_7:-48:0.274
chr20	43596709	43596852	reg1006886.p1	6.384	+	AK315238 U60207 TSC_hg19_v1_chr20_+_43595176 BC058916 BC039023 U18297	-1589	+	NM_006282 TSC_hg19_v1_chr20_+_43595152 AB209315 BC029511 AK309169 AK225326 BC005231 BC015332 BC038850 CR933633 BC093768	-1634	+	AB590243 BT020008 BT020009 CR456765 CU677113 DQ891151 EU176561 TSC_hg19_v1_chr20_-_43589038 AK129538 U58970 BC014907 AK222952 BC001763 BC007423 AK000594 BC006573 AB085681 AK302128 AK307655 NM_006809	-7726	-	BC132957 BC132959 BC144234 TSC_hg19_v1_chr20_-_43729732 AK289735 NM_002251	132909	-	CU691668 AY038181 BC039173 AY358822 NM_145652	146987	-	AB464352 AY358678 AY037803 NM_080869	156316	-	AK315238|STK4|6789|serine/threonine kinase 4##U60207|STK4|6789|serine/threonine kinase 4##BC058916|STK4|6789|serine/threonine kinase 4##BC039023|STK4|6789|serine/threonine kinase 4##U18297|STK4|6789|serine/threonine kinase 4##NM_006282|STK4|6789|serine/threonine kinase 4##AB209315|STK4|6789|serine/threonine kinase 4##BC029511|STK4|6789|serine/threonine kinase 4##AK309169|STK4|6789|serine/threonine kinase 4##AK225326|STK4|6789|serine/threonine kinase 4##BC005231|STK4|6789|serine/threonine kinase 4##BC015332|STK4|6789|serine/threonine kinase 4##BC038850|STK4|6789|serine/threonine kinase 4##CR933633|STK4|6789|serine/threonine kinase 4##BC093768|STK4|6789|serine/threonine kinase 4##BT020008|TOMM34|10953|translocase of outer mitochondrial membrane 34##BT020009|TOMM34|10953|translocase of outer mitochondrial membrane 34##CR456765|TOMM34|10953|translocase of outer mitochondrial membrane 34##DQ891151|TOMM34|10953|translocase of outer mitochondrial membrane 34##EU176561|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK129538|TOMM34|10953|translocase of outer mitochondrial membrane 34##U58970|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC014907|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK222952|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC001763|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC007423|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK000594|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC006573|TOMM34|10953|translocase of outer mitochondrial membrane 34##AB085681|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK302128|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK307655|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006809|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC132957|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC132959|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC144234|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AK289735|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##NM_002251|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AY038181|WFDC5|149708|WAP four-disulfide core domain 5##BC039173|WFDC5|149708|WAP four-disulfide core domain 5##AY358822|WFDC5|149708|WAP four-disulfide core domain 5##NM_145652|WFDC5|149708|WAP four-disulfide core domain 5##AY358678|WFDC12|128488|WAP four-disulfide core domain 12##AY037803|WFDC12|128488|WAP four-disulfide core domain 12##NM_080869|WFDC12|128488|WAP four-disulfide core domain 12	0.990248	0.0	denovo_WM_7:9:0.906
chr6_qbl_hap6	2028474	2028604	reg1006279.p1	6.384	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.981751	0.0	denovo_WM_7:30:0.337	denovo_WM_7:31:0.355	denovo_WM_7:32:0.266
chr16	87802921	87803063	reg1008567.p1	6.383	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-3422	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-3477	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-166282	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	100083	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	167155	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	182176	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.056073	0.033594	
chr12	93337936	93338096	reg1005812.p2	6.382	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-14918	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-14973	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	-15078	-	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	433876	+	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	497670	-	TSC_hg19_v1_chr12_-_93835718 D83004	497702	-	NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N	1.99974	0.0	denovo_WM_7:19:0.828	denovo_WM_7:34:0.822
chr8	1683747	1683884	reg1005973.p1	6.381	+	AF119818 AF119817 NM_004745	-234266	+	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	-1002584	-	TSC_hg19_v1_chr8_-_681204 AK297476	-1002604	-	NM_018941 TSC_hg19_v1_chr8_+_1711937 AK312486 AF123757 AF123758 AF123759 AF123760 AF123761	28095	+	TSC_hg19_v1_chr8_+_1712012 BC007725	28221	+	TSC_hg19_v1_chr8_+_1772112 AB002292 NM_014629 BC112926 CR749570	88324	+	AF119818|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AF119817|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_004745|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##NM_018941|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AK312486|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123757|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123758|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123759|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123760|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123761|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##BC007725|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AB002292|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##NM_014629|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##BC112926|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##CR749570|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10	0.0	0.976184	CTCF.p2:-22:0.976
chr14	106554918	106555036	reg1007074.p1	6.380	+	AF028100 AF460781 AF460830 DQ523918 DQ454686 DQ454784 AY003751 GQ232926 GQ232842 DQ454536 DQ454572 DQ454577 DQ523874 GU552698 DQ100996 AY003834 AY003866 DQ454881 DQ454918 GQ232935 GU552747 AY003780 DQ454841 DQ523891 FJ694882 FJ839966 FJ839976 FJ839978 FJ839985 FJ839992 FJ840024 FJ840027 FJ840030 FJ840039 FJ840068 FJ840074 FJ840076 FJ840077 FJ840081 FJ840084 FJ840087 FJ840121 FJ840122 FJ840152 FJ840211 FJ840345 FJ840372 FJ840374 FJ840382 FJ840393 FJ873873 FJ873898 FJ873903 FJ873918 FJ873976 FJ873981 FJ874020 FJ874039 FJ874070 AJ008190 AY003813 AY003814 EF175404 EF091903 EF091904 EF175384 EU350416 EU350417 AF035027 EU099275 EU099133 AM183981 AM183982 AM183983 HQ704031 HM774241 L04343 U63211 AF103184 FJ385385 HM774328 HM774349 HM774514 HM774642 HM774682 HM774840 HM774998 HQ704030 HQ704032 HQ704033 HQ704034 AF032360 HM774930 S56184 L03385 Y15773 AJ306670 AY376085 DQ926534 HM994910 HM995374 HM995381 AB063655 AB063669 AB063676 AB063796 AB063804 AB063927 AB066885 AB066886 AB066890 AB066980 AB066983 AB067006 AB067010 AB067016 AB067028 AB067069 AB067083 AB067103 AB067234 AB067266 AB363180 AF174058 AF174062 AJ306669 AJ309318 AM279602 AY376074 AY376080 AY944687 DQ100830 DQ100852 DQ100869 DQ100889 DQ100935 DQ926042 DQ926211 DQ926238 DQ926293 DQ926337 DQ926445 DQ926545 DQ926589 DQ926594 DQ926641 EF177963 EF177965 EU117415 FJ385303 FJ385304 FJ385360 FJ490203 GU570287 GU570291 GU570293 GU570294 HM994902 HM994970 HM994971 HM994973 HM994974 HM994975 HM994976 HM994999 HM995000 HM995001 HM995002 HM995003 HM995005 HM995006 HM995007 HM995008 HM995009 HM995010 HM995011 HM995229 HM995234 HM995240 HM995300 HM995301 HM995302 HM995303 HM995305 HM995350 HM995352 HM995354 HM995372 HM995378 HM995379 HM995382 HM995383 HM995384 HM995385 HM995386 HM995423 HM995430 HM995431 HM995449 HM995453 HM995454 HM995455 HM995458 HM995459 HM995507 HM995509 HM995510 HM995511 HM995575 HM995632 HM995835 HM995836 HM995838 HM995839 HM995840 HM995841 HM995954 HM996284 HM996494 HQ378378 U07985 Z18834 X98899 AB021529 AB021539 AF035796 AF471223 AF471224 AF471226 AF471227 AF471231 AF471235 AF471238 AF471239 AJ239353 AJ245321 AJ579149 AJ579153 AJ579156 AJ579215 AJ579229 AJ617571 AY379733 AY941939 D83676 D83677 DQ225095 DQ535264 DQ535301 DQ535363 DQ535409 DQ535438 DQ535483 EF633755 EF633756 EF633757 EF633758 EF633787 EF633789 EF633790 EF633816 EU835550 EU835551 GU570285 GU570286 HM152494 U00488 U00506 U00546 U00577 U00588 X62968 X62969 X63080 X64239 X73605 X79166 X99360 Z18318 Z33899 Z33901 Z14176 Z14171 AY994080 EU883655 DQ234395 DQ234396 DQ234397 DQ234398 DQ234399 DQ234401 EU883644 EU883645 EU883646 EU883647 EU883648 EU883649 EU883650 EU883651 EU883652 EU883653 EU883654 EU883656 EU883657 EU883658 EU883659 L23565 X53613 Z80840 CU675389 CU676902 BC021276 BC006402 TSC_hg19_v1_chr14_-_106552810 AK097367 AK123546 AK128565 AK128625 AK129508 BX640627	-2416	-	U49659 U32203 U32487 U32607 U32954 U33784 AF028116 AF267845 AJ437672 AJ437673 AJ437676 AJ437677 AY155561 AY155552 AY155553 AY155554 AY155555 AY155556 AY155558 AY155559 AY155560 DQ454893 DQ454501 DQ454556 AY003840 DQ454563 DQ454673 DQ454929 DQ454579 DQ454828 DQ523913 DQ454847 AF017458 FJ873972 FJ873986 HM995044 AJ487486 FJ694876 GQ232843 AF209886 AJ007327 AF209893 HQ392873 AF343406 AM279474 AM279478 AM279560 AM279563 AF308547 AF308555 HM773982 HM775023 AY515010 JN110874 L04323 HM774154 HM774400 HM774451 HM774458 HM774741 HM774744 HM774802 HM774806 HM775008 HM775009 HM775022 DQ097897 EU099249 AB067193 HM995129 AM183997 AY393237 AY393510 AY393524 AY193810 AY392846 AY392882 AY393110 AY393131 AY393136 AY393222 AY393234 AY393247 AY393248 AY393260 AY393499 AY393502 AY393529 AY393530 AY393534 AY393607 AY393631 AY393634 HM996282 HM996256 DQ100826 AF062290 DQ100689 DQ523985 EU620053 GU570225 HM995043 HM995045 HM995046 HM995047 HM995049 HM995050 HM995122 HM995127 HM995128 HM995148 HM995149 HM995150 HM995151 HM995152 HM995153 HM995154 HM995155 HM995208 HM995254 HM995311 HM995312 HM995363 HM995366 HM995694 HM995695 HM995698 HM995700 HM995703 HM995706 HM995708 HM995973 HM995974 HM995975 HM995976 HM995980 HM995983 HM995988 HM995989 HM995993 HM996202 HM996204 HM996241 HM996510 AB066887 AB067030 AB067098 AB067233 AF115112 AF115117 AF174060 AJ306682 AY376094 AY515000 DQ926131 DQ926568 DQ926621 EF178040 FJ195456 FJ195503 Z92895 Z92896 AB063690 AB063704 AB063736 AB066827 AB066831 AB066838 AB067161 AB067182 AB067304 AB067306 AB067324 AB289325 AB289327 AF021988 AF115130 AJ617574 AY640556 AY781858 AY971028 AY971058 AY971094 DQ005271 DQ100828 DQ100854 DQ205183 DQ535305 DQ768422 DQ926187 DQ926367 DQ926378 DQ926488 FJ385322 GU570224 HM152497 JN158499 M26435 U00547 U00560 U00561 Z18321 Z97032 DQ926181 DQ535306 DQ535339 EF178019 EF178022 FJ195500 FJ195523 L26892 HM995872 HM995895 HM995898 HM995899 AF062115 AF062177 AF062190 AF062211 AF062222 AF062223 AF062261 AF062263 AY392866 U43760 X65919 Z47216 Z47238 Z47240 BC067091 AF283666 BC075846 BC037361 Z14165 Z14166 Z14167 TSC_hg19_v1_chr14_-_106539571 AK097906 AK301334	-15638	-	AY035373 AY885209 AY885216 X61021 DQ454578 DQ523921 AF460677 AF460684 AF460701 AF460706 AF460802 DQ454428 GQ232803 GQ232912 GQ232954 GU552749 GQ232920 AY003818 AY003835 AY003844 AY003714 AY003809 DQ454647 DQ454454 DQ454471 DQ454492 DQ454915 GU552745 GU552756 GU552770 DQ454424 DQ454524 DQ454812 DQ454885 DQ454891 DQ454983 DQ454662 DQ454913 FJ840305 FJ840316 FJ873819 FJ873835 FJ873939 FJ873998 FJ874018 FJ874053 FJ874076 EU350415 AJ008237 AY003828 AJ487494 AJ487503 AY003805 DQ100698 EF175433 EF441757 EU814965 EU814969 DQ454482 EU099127 AM183996 HQ392896 AJ239383 AM279491 GQ903488 HM995750 AF103301 AF103037 AF103086 AF103146 AF165100 HM774111 AF103361 JN110905 HM775055 HM773993 FJ385329 HM774299 HM774454 HM774805 JN110797 JN111157 L04326 GQ504865 GQ504893 GQ504963 GQ504975 HM773970 HM774033 HM774184 HM774282 HM774312 HM774358 HM774362 HM774394 HM774602 HM774747 HM774807 HM774864 HM774872 HM774884 HM774902 HM774908 HM774914 HM774917 HM774979 HM774993 HM775020 HM775028 HQ703988 HQ704021 HQ704022 JN111201 DQ100741 HM775041 HM775050 S56604 AF103104 AF103221 AY866717 EF624097 EF624098 EF624099 EF624100 EF624101 EF624102 EF624103 EF624104 EF624105 EF624106 EF624107 EF624108 EF624109 EF624110 EF624111 EF624222 AJ300779 AJ300783 AJ300785 AY960861 DQ926366 AF001791 DQ100888 AF485461 AF485467 AF485475 AJ290433 AY376111 AF471523 AY423164 AY423165 AY423166 AY423167 AY423168 AY423196 AY423201 DQ100661 AJ556637 AY165857 AY885183 DQ109964 DQ109966 L37310 U00590 AF471185 AJ389182 AY866729 AY941943 DQ187554 DQ187558 DQ187672 GU570324 HM994886 HM995057 HM995131 HM995134 HM995135 HM995636 HM995660 HM995664 HM995773 HM995858 HM995860 HM996049 HM996147 HM996163 HM996317 HM996335 HM996371 HM996422 HM996433 HM996484 HM996538 U00584 DQ187677 DQ187708 DQ322751 DQ322797 DQ322802 DQ322804 DQ322860 DQ322861 DQ322862 DQ322863 DQ322864 DQ322865 DQ322866 DQ322867 DQ322894 DQ322895 DQ322896 DQ322897 DQ322905 DQ322906 DQ322909 DQ322910 DQ322922 DQ322957 DQ322958 DQ840698 DQ840723 DQ840725 DQ840754 DQ840755 DQ840757 DQ840759 DQ840761 DQ840762 DQ840763 DQ840764 DQ840765 DQ840767 DQ840768 DQ840779 DQ840854 DQ840860 DQ840862 DQ840867 DQ840872 DQ840875 DQ926106 HM996194 AF098360 AF115120 AF151699 AF151701 AF471405 AF471406 AF471470 AJ488539 AJ606116 AJ606117 AY530318 AY686908 DQ100752 DQ100787 DQ100790 DQ100827 DQ100850 DQ926039 DQ926040 DQ926061 DQ926074 DQ926108 DQ926127 DQ926145 DQ926175 DQ926381 DQ926443 DQ926559 DQ926611 EF177960 EF178018 EF178108 EU794412 FJ195533 FJ385315 HQ378333 HQ378408 L19913 X87893 X95740 Z18836 AB021510 AB021520 AB063665 AB063803 AB063812 AB063892 AB066987 AB067027 AB067099 AB067112 AB067123 AB067237 AB067268 AF021995 AF022001 AF052526 AF062119 AF062188 AF062241 AF109406 AF174118 AF408728 AF471169 AF471171 AF471172 AF471177 AF471179 AF471180 AF471181 AF471182 AF471184 AF471186 AF471189 AF471194 AF471195 AF471198 AF471199 AF471203 AF471204 AF471205 AF471208 AF471212 AF471214 AF471220 AF471386 AF471522 AF471527 AF471533 AF471543 AJ238036 AJ238038 AJ238040 AJ239359 AJ245208 AJ245317 AJ271601 AJ300781 AJ300786 AJ300796 AJ414013 AJ488543 AJ491910 AJ555273 AJ556638 AJ556640 AJ556645 AJ556649 AJ556658 AJ556659 AJ556660 AJ556664 AJ556667 AJ556668 AJ556669 AJ574777 AJ574779 AJ579141 AJ579162 AJ579198 AJ579216 AJ579217 AJ579233 AJ579234 AJ579239 AJ579269 AJ627231 AJ627236 AJ627237 AY033247 AY033256 AY033273 AY148344 AY281326 AY640478 AY685255 AY685317 AY955072 AY971017 AY971018 AY971074 AY971101 AY971123 DQ021409 DQ065716 DQ065724 DQ535273 DQ535337 DQ535344 DQ535374 DQ535415 DQ535435 DQ535457 DQ535480 DQ926153 DQ926159 DQ926221 DQ926410 DQ926544 DQ926553 DQ926573 DQ926614 EF177979 EF178025 EF178029 EF178039 EF178120 EF178121 EF178134 EF633799 EF633800 EU549723 EU794426 FJ385367 FJ481089 FJ492901 GQ856061 GQ903508 GQ903515 HM152524 HQ689704 JF806286 JF806288 JF806292 L39958 U00487 U00538 U03400 U76679 U85242 U85243 U96279 U96282 U96284 X62965 X99356 X99361 Z18822 Z95482 Z96960 Z96961 Z96962 Z96971 HM995657 AF283801 AJ249633 HM995748 HM995753 HM995770 HM995771 HM995772 HM995775 HM995873 Z14175 X69864 AY392917 AY393072 AY393151 AY393154 AY393160 X69863 X67908 Z14189 AF062138 AF062243 AF174030 AF174034 U79585 X59134 X65896 CU676308 BC041037 BC018747 BC062335 BC064496 TSC_hg19_v1_chr14_-_106518933 AK130614 AK097345 AK123975 AK126132 AK225676 BX640822	-36298	-	DQ454787 U64487 AF460704 AF460740 AF460807 DQ454554 AL389978 FJ385400 DQ454728 DQ454993 DQ454902 GQ232943 GU552699 AY003824 AY003849 DQ454431 EF566904 AY003777 DQ454493 DQ454848 GU552714 GU552717 DQ454498 DQ454515 DQ454965 DQ523862 EF407823 DQ454754 DQ454849 DQ454990 FJ840311 FJ840313 FJ840317 FJ840329 FJ840349 FJ873842 FJ873857 FJ873909 FJ873912 FJ873925 FJ874051 FJ874081 FJ874083 FJ874089 HM116118 AY003786 EU433870 EF175391 EF175399 EF175431 EF175439 EF441746 EU433865 EU667604 EU099143 EU099237 EU099244 EU099063 EU099194 EU099113 EU099200 AM183985 AM183986 EU099292 HQ392870 AF103124 DQ100718 AF103028 AF103040 AF103322 HM774410 L07309 L07310 L07312 JN110741 L03824 L03825 L04325 HM774027 HM774097 HM774142 HM774318 HM774446 HM774453 HM774557 HM774576 HM774604 HM774628 HM774645 HM774671 HM774698 HM774809 HM774847 HM774858 HM775011 HM775058 AF165102 HM775038 HM775039 HM775042 AF082199 EU146392 EU146393 EU146395 AY376083 AY376084 AF103217 AY485363 DQ100667 DQ926397 DQ926487 AF062294 DQ187521 DQ187649 DQ523968 DQ523986 DQ524059 DQ926170 DQ926613 GU570296 GU570301 HM995316 HM995318 HM995367 HM995592 HM995658 HM995661 HM995663 HM995671 HM995696 HM995697 HM995699 HM995792 HM995793 HM995795 HM995911 HM995912 HM995913 HM995914 HM995915 HM995916 HM995917 HM995918 HM996161 HM996278 DQ187668 DQ322752 DQ322795 DQ322799 DQ322834 DQ322835 DQ322836 DQ322837 DQ322838 DQ322839 DQ322840 DQ322841 DQ322842 DQ322843 DQ322847 DQ322848 DQ322849 DQ322850 DQ322851 DQ322852 DQ322853 DQ322854 DQ322907 DQ322908 DQ322924 DQ322985 DQ322986 DQ322987 DQ840668 DQ840696 DQ840724 DQ840738 DQ840869 DQ840885 DQ840898 DQ840902 DQ926246 DQ926249 DQ926313 DQ926315 AB063717 AB063810 AB066882 AB066982 AB067264 AB067265 AB363130 AB363133 AB363178 AB363229 AB363239 AF234248 AJ306671 AY033239 AY033240 AY376073 AY376086 AY376088 AY422530 AY530313 AY640532 AY846271 AY971070 AY971132 AY986395 AY986402 DQ065641 DQ065715 DQ100950 DQ926227 DQ926469 DQ926491 DQ926596 EF178046 EU549734 FJ195526 GU570302 HQ378386 Z46761 AB021522 AB063668 AB363134 AB363177 AB363231 AF021996 AF035794 AF115122 AF119800 AF119801 AF119802 AF119803 AF119804 AF151704 AF174095 AF471243 AF471244 AF471245 AF471248 AF471251 AF471252 AF471253 AJ389186 AJ414018 AJ555260 AJ579155 AJ579190 AJ579223 AJ579232 AJ579237 AJ627246 AY530315 AY685254 AY971117 DQ065650 DQ100894 DQ100911 DQ205140 DQ205152 DQ212511 DQ431495 DQ535391 DQ535412 DQ535423 DQ535428 DQ840729 DQ840811 DQ926123 DQ926333 DQ926625 EF178050 EF633766 EF633767 EF633768 EF633798 FJ492898 GU570300 GU570349 S77136 U64493 U64507 U85230 U96395 X62972 X63081 X64241 X99352 X99366 Z96969 Z96970 Z97036 HM995655 HM995787 HM995788 HM995789 HM995870 L33033 X67907 AY392930 AY393153 AY393157 AY393162 L08089 AF062269 L06912 S72664 X65897 X81736 X81744 X81754 Z11959 BC090940 X61013 X61014 BC073758 AK097320 AK125582 AK130539 AK130586 AK130844 AK301403 TSC_hg19_v1_chr14_-_106573761	18578	-	GU552766 DQ454945 DQ454680 DQ454800 DQ100736 HQ392877 AY062313 JN110910 JN111168 L03821 L04324 FJ385334 FJ385335 HM774019 HM774079 HM774175 HM774429 HM774436 HM774460 HM774566 HM774691 HM774780 HM774984 AF165105 AY062308 DQ100831 AJ300807 AB063700 AY423173 AY062309 DQ100870 GU570344 HM994897 HM994907 HM994915 HM995019 HM995419 HM995424 HM995733 HM995761 HM995921 HM995935 HM995953 HM996087 HM996247 HM996409 DQ840731 DQ840896 AB374202 AM279603 AY866783 DQ431491 EF178033 FJ385392 GU570335 AB021538 AB063673 AB066975 AB067002 AB067017 AB067076 AB067261 AB363102 AB363150 AF062210 AF098364 AF174056 AF174100 AF174120 AF301484 AF455549 AF471257 AF471259 AF471261 AF471262 AF471264 AF471363 AF471478 AF471487 AF471497 AJ007956 AJ389180 AJ399809 AJ413989 AJ555276 AJ556639 AJ579273 AM040537 AY268370 AY466509 AY685302 AY685304 AY921574 AY921575 AY927662 AY941906 D83675 DQ065617 DQ065728 DQ535267 DQ535281 DQ535298 DQ535334 DQ535408 DQ535485 DQ926436 DQ926504 DQ926507 DQ926513 DQ926550 EF178020 GU570303 GU570338 GU570343 GU570348 L33984 S65535 Z33898 AY670714 HM995884 AF062141 L03683 L38431 X65894 X81740 M18515 BC053984 TSC_hg19_v1_chr14_-_106586668	31524	-	AF028103 AF028108 Z11951 FJ840130 AF460713 AF460734 DQ454527 DQ454388 DQ454699 GQ232866 DQ454529 GQ232862 GQ232892 GU552777 EF407836 AY003841 DQ454714 GU552715 GU552744 DQ454664 DQ454668 DQ454679 DQ454889 DQ523850 AF209741 FJ385398 FJ873853 GU552716 GU552740 FJ840399 FJ840405 FJ873982 FJ840136 FJ840137 FJ840146 FJ873844 FJ873859 FJ873968 AJ008185 AJ008243 DQ454505 AY003713 AY003823 AY003842 EU433861 AF103214 EF441758 AF209733 AF209739 M18511 EU099088 EU099091 EU099108 EU099125 EU099214 DQ100874 AF103360 AF103031 AF103055 AF103172 AF103027 AY062317 HM773987 JN110484 JN110743 JN110870 JN110880 JN110904 JN111065 FJ385409 FJ385427 GQ504866 HM774017 HM774087 HM774308 HM774638 HM774746 HM774912 HM774921 AF032354 AF103227 AF103255 AF082194 EU146316 EU146375 EU146379 EU146381 EU146388 EU146390 EU146391 AJ271553 AJ300806 DQ926562 L38566 AB066857 HM995144 AF035789 AF035799 AF035798 L26034 AF062296 AF062303 AF471268 DQ454900 DQ524054 HM995097 HM995098 HM995245 HM995265 HM995270 HM995272 HM995274 HM995569 HM995686 HM995688 HM995689 HM995690 HM995691 HM995692 HM995930 HM995937 HM995946 HM996125 HM996208 HM996383 HM996458 DQ322777 DQ840774 DQ840820 DQ840842 DQ840897 AJ278771 AY686927 AY866567 AY998725 DQ100923 DQ100931 DQ926186 DQ926328 DQ926496 EF178079 FJ195531 FJ195532 FJ385300 FJ385301 FJ385374 FJ385399 HM995143 L39128 X79165 AB021509 AB021517 AB021528 AB021540 AB063657 AB063800 AB063845 AB066984 AB067025 AB067128 AB363162 AB363202 AB363206 AB373605 AB373606 AB373610 AB373616 AB373630 AB373634 AF021972 AF035026 AF174091 AF471269 AF471270 AF471271 AF471274 AF471276 AF471277 AF471278 AF471279 AJ249632 AJ401163 AJ401164 AJ556720 AJ579094 AJ579101 AJ579115 AJ579140 AJ579160 AJ579180 AJ579219 AJ579227 AJ579235 AJ579263 AJ579275 AJ579285 AJ627238 AY055479 AY376081 AY971142 D83688 D83689 DQ065634 DQ535287 DQ535290 DQ535292 DQ535322 DQ535337 DQ535365 DQ535372 DQ535396 DQ535403 DQ535404 DQ926160 DQ926428 DQ926446 DQ926474 DQ926484 DQ926537 DQ926556 EF028218 EF178024 FJ195520 FJ195538 FJ385323 GU570304 HM152485 HQ689757 U97245 X62954 X62960 X87453 X99364 Y12699 Z18319 Z18322 Z18323 Z75557 Z98737 Z98738 Z98739 Z98740 AJ401161 M34023 L14818 X56523 X56524 AF431053 AF431055 Z14169 AY505570 X81723 X81743 Z14216 Z80843 L29153 L29154 Z14960 M34032 BC065820 BC014667 TSC_hg19_v1_chr14_-_106610847 AK123981 AK301228 AK130434 AK289373	55618	-	BC021276|IGHD|3495|immunoglobulin heavy constant delta##BC006402|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK097367|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK123546|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK128565|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK128625|IGHD|3495|immunoglobulin heavy constant delta##AK129508|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BX640627|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC067091|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AF283666|IGHA1|3493|immunoglobulin heavy constant alpha 1##BC075846|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC037361|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK097906|IGHG3|3502|immunoglobulin heavy constant gamma 3 (G3m marker)##BC041037|IGHM|3507|immunoglobulin heavy constant mu##BC018747|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC062335|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##BC064496|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK097345|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK123975|IGH@|3492|immunoglobulin heavy locus##BX640822|IGH@|3492|immunoglobulin heavy locus##AL389978|IGHA2|3494|immunoglobulin heavy constant alpha 2 (A2m marker)##BC090940|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC073758|IGHM|3507|immunoglobulin heavy constant mu##AK097320|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK125582|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK130539|IGHM|3507|immunoglobulin heavy constant mu##AK130586|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK130844|IGHV4-31|28396|immunoglobulin heavy variable 4-31##AK301403|IGHG3|3502|immunoglobulin heavy constant gamma 3 (G3m marker)##BC053984|IGHV4-31|28396|immunoglobulin heavy variable 4-31##BC065820|IGHV4-31|28396|immunoglobulin heavy variable 4-31##BC014667|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK130434|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)	0.0	0.847096	CTCF.p2:-14:0.847
chr3	30645699	30645847	reg1007925.p1	6.379	+	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	-1322809	+	NM_001040432	-2213787	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-2255212	-	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	2249	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	2630	+	AL832766 NM_207359	290379	-	NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1	0.980242	0.0	denovo_WM_7:-37:0.943
chr3	47365780	47365960	reg1004851.p2	6.379	+	NM_025010 TSC_hg19_v1_chr3_+_47324433 AK023765 AK291477 AK295292 BX537953 BC015962 AB527175 AM393269 AM393767 BC032620	-41442	+	BC015311 NM_001134878 NM_022342 NM_182902	-41575	-	AB384629 TSC_hg19_v1_chr3_-_47205422 AK131371 NM_014159	-160431	-	AB040904 NM_015466 TSC_hg19_v1_chr3_+_47422510 AK055157 AK299906 AK295888 AK289502 AB025194 AF290614 AK295877 BC089042	56662	+	TSC_hg19_v1_chr3_-_47517349 AK300311	151467	-	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	151562	-	NM_025010|KLHL18|23276|kelch-like 18 (Drosophila)##AK023765|KLHL18|23276|kelch-like 18 (Drosophila)##AK291477|KLHL18|23276|kelch-like 18 (Drosophila)##AK295292|KLHL18|23276|kelch-like 18 (Drosophila)##BX537953|KLHL18|23276|kelch-like 18 (Drosophila)##BC015962|KLHL18|23276|kelch-like 18 (Drosophila)##AM393269|KLHL18|23276|kelch-like 18 (Drosophila)##AM393767|KLHL18|23276|kelch-like 18 (Drosophila)##BC032620|KLHL18|23276|kelch-like 18 (Drosophila)##BC015311|KIF9|64147|kinesin family member 9##NM_001134878|KIF9|64147|kinesin family member 9##NM_022342|KIF9|64147|kinesin family member 9##NM_182902|KIF9|64147|kinesin family member 9##AK131371|SETD2|29072|SET domain containing 2##NM_014159|SETD2|29072|SET domain containing 2##AB040904|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_015466|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK055157|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK299906|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295888|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK289502|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AB025194|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AF290614|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295877|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##BC089042|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK300311|SCAP|22937|SREBF chaperone##AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone	2.881747	0.0	denovo_WM_7:-62:0.503	denovo_WM_7:-63:0.387	denovo_WM_7:-78:0.802	denovo_WM_7:-94:0.736
chr13	23952528	23952639	reg1005233.p1	6.378	+	TSC_hg19_v1_chr13_-_23949652 AK125458	-2933	-	NM_000231 U34976 BC109321 AK290620 AK316579 BC074777 BC074778	-197468	+	TSC_hg19_v1_chr13_+_22245083 AK290792 NM_002010	-1707435	+	TSC_hg19_v1_chr13_-_24007842 NM_014363	55257	-	TSC_hg19_v1_chr13_+_24144402 NM_001204459 NM_148957	191872	+	TSC_hg19_v1_chr13_+_24153521 BC035796 NM_001204458 NM_018647 AY358888 AF167555	200949	+	AK125458|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##NM_000231|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##U34976|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC109321|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK290620|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK316579|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074777|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074778|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK290792|FGF9|2254|fibroblast growth factor 9 (glia-activating factor)##NM_002010|FGF9|2254|fibroblast growth factor 9 (glia-activating factor)##NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##NM_001204459|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_148957|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##BC035796|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204458|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_018647|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AY358888|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AF167555|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19	0.997064	0.0	denovo_WM_7:40:0.845
chr15	39785695	39785848	reg1006449.p2	6.377	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	-242846	+	AK093014 AX747856 BC119016 BC119810 NM_207444	-796973	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	-928840	-	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	87558	+	AK093308 AX748045 BC045191 NM_152597	289257	-	AK091251 TSC_hg19_v1_chr15_+_40075106	289335	+	BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1	0.0	0.0	
chr15	66764449	66764547	reg1000417.p1	6.375	+	TSC_hg19_v1_chr15_+_66694219 AK294322	-70281	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	-85225	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	-85336	+	AF093593 AB464224 AK292051 TSC_hg19_v1_chr15_-_66790104 BC014315 AK024763 AK312018 NM_006049	25608	-	L20868 BC005817 BC009888 BC014653 BC010151 BC007996 BC040610 AB208977 BC001365 BC018840 BC095427 TSC_hg19_v1_chr15_-_66797186 AK297490 AK291117 AK297484 AK130784 AK223057 AK291859 AK294113 AK298224 BC066925 D23660 NM_000968	32674	-	AK023175 NM_017975 BX640701	32944	+	AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AF093593|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK292051|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##BC014315|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK024763|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK312018|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##NM_006049|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##L20868|RPL4|6124|ribosomal protein L4##BC005817|RPL4|6124|ribosomal protein L4##BC009888|RPL4|6124|ribosomal protein L4##BC014653|RPL4|6124|ribosomal protein L4##BC010151|RPL4|6124|ribosomal protein L4##BC007996|RPL4|6124|ribosomal protein L4##BC040610|RPL4|6124|ribosomal protein L4##AB208977|RPL4|6124|ribosomal protein L4##BC001365|RPL4|6124|ribosomal protein L4##BC018840|RPL4|6124|ribosomal protein L4##BC095427|RPL4|6124|ribosomal protein L4##AK291117|RPL4|6124|ribosomal protein L4##AK297484|RPL4|6124|ribosomal protein L4##AK130784|RPL4|6124|ribosomal protein L4##AK223057|RPL4|6124|ribosomal protein L4##AK291859|RPL4|6124|ribosomal protein L4##AK294113|RPL4|6124|ribosomal protein L4##BC066925|RPL4|6124|ribosomal protein L4##D23660|RPL4|6124|ribosomal protein L4##NM_000968|RPL4|6124|ribosomal protein L4##AK023175|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##NM_017975|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##BX640701|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)	1.240024	0.0	denovo_WM_7:-12:0.249	denovo_WM_7:-73:0.237	denovo_WM_7:-74:0.237	denovo_WM_7:-75:0.237	denovo_WM_7:-76:0.237
chr4	8223187	8223367	reg1006032.p1	6.375	+	TSC_hg19_v1_chr4_+_8201038 BC030283 AK074093 NM_018986 BC068094 AK074402 AK126165 BC131785	-22245	+	DQ413176 AJ748600 AJ748601 TSC_hg19_v1_chr4_-_8160541 BC122567 AK130044 AK094754 BC067214 NM_001130083 NM_001130084 NM_001130085 NM_001130086 NM_001130087 NM_001130088 NM_032432	-62743	-	TSC_hg19_v1_chr4_-_8129388 AK301060	-93892	-	TSC_hg19_v1_chr4_+_8271480 NM_053044 AY040094 BC034390 BC035717 AY280665 AY280666 AB528940 DQ891188 DQ894371	48298	+	TSC_hg19_v1_chr4_-_8430196 AK313242	206924	-	Y11411 BC017053 TSC_hg19_v1_chr4_-_8442447 AK225080 NM_001101667 NM_003501	219179	-	BC030283|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074093|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##NM_018986|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC068094|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074402|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK126165|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC131785|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##DQ413176|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748600|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748601|ABLIM2|84448|actin binding LIM protein family, member 2##BC122567|ABLIM2|84448|actin binding LIM protein family, member 2##AK130044|ABLIM2|84448|actin binding LIM protein family, member 2##AK094754|ABLIM2|84448|actin binding LIM protein family, member 2##BC067214|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130083|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130084|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130085|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130086|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130087|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130088|ABLIM2|84448|actin binding LIM protein family, member 2##NM_032432|ABLIM2|84448|actin binding LIM protein family, member 2##AK301060|ABLIM2|84448|actin binding LIM protein family, member 2##NM_053044|HTRA3|94031|HtrA serine peptidase 3##AY040094|HTRA3|94031|HtrA serine peptidase 3##BC034390|HTRA3|94031|HtrA serine peptidase 3##BC035717|HTRA3|94031|HtrA serine peptidase 3##AY280665|HTRA3|94031|HtrA serine peptidase 3##AY280666|HTRA3|94031|HtrA serine peptidase 3##DQ891188|HTRA3|94031|HtrA serine peptidase 3##DQ894371|HTRA3|94031|HtrA serine peptidase 3##AK313242|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##Y11411|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##BC017053|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##AK225080|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##NM_001101667|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##NM_003501|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl	0.99255	0.0	denovo_WM_7:-97:0.597
chrX	58377738	58377817	reg1004300.p1	6.375	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-440818	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-759317	+	NM_007157	-759509	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4193422	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4270490	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4403090	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	0.0	
chr20	17485395	17485530	reg1000315.p1	6.374	+	TSC_hg19_v1_chr20_+_17207684 BC005815 AK294200 AK312341 J05252 AB528512 DQ892675 DQ895917	-277647	+	BC001905 TSC_hg19_v1_chr20_+_17207673	-277791	+	NM_001201529 NM_002594 TSC_hg19_v1_chr20_+_17207617	-277852	+	AF039655 Y16717 TSC_hg19_v1_chr20_-_17512006 NM_001195	26530	-	AK316247 BC041483 NM_001161705	54080	-	NM_001011546 NM_006870 TSC_hg19_v1_chr20_+_17550756 AK315994 BC009477 AK312645 BX647319 S65738 AK302338	65277	+	BC005815|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##AK294200|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##AK312341|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##J05252|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##DQ892675|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##DQ895917|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##BC001905|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##NM_001201529|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##NM_002594|PCSK2|5126|proprotein convertase subtilisin/kexin type 2##AF039655|BFSP1|631|beaded filament structural protein 1, filensin##Y16717|BFSP1|631|beaded filament structural protein 1, filensin##NM_001195|BFSP1|631|beaded filament structural protein 1, filensin##AK316247|BFSP1|631|beaded filament structural protein 1, filensin##BC041483|BFSP1|631|beaded filament structural protein 1, filensin##NM_001161705|BFSP1|631|beaded filament structural protein 1, filensin##NM_001011546|DSTN|11034|destrin (actin depolymerizing factor)##NM_006870|DSTN|11034|destrin (actin depolymerizing factor)##AK315994|DSTN|11034|destrin (actin depolymerizing factor)##BC009477|DSTN|11034|destrin (actin depolymerizing factor)##AK312645|DSTN|11034|destrin (actin depolymerizing factor)##BX647319|DSTN|11034|destrin (actin depolymerizing factor)##S65738|DSTN|11034|destrin (actin depolymerizing factor)##AK302338|DSTN|11034|destrin (actin depolymerizing factor)	0.988417	0.0	
chr15	21164807	21164939	reg1006987.p1	6.373	+	NM_207355 BC066981	-92895	-	NM_001145004	-417760	-	TSC_hg19_v1_chr15_-_20711449 BC070076 BC033888 BC094757	-453436	-	NM_207355 BC066981	918265	-	BC136985 NM_001004719	1203604	+	BC136597 BC136598 NM_001005241 DQ786223	1217572	+	NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##NM_001145004|GOLGA6L6|727832|golgin A6 family-like 6##BC033888|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##BC094757|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##BC136597|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136598|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##NM_001005241|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4	0.999355	0.0	
chr3	8399156	8399336	reg1000411.p2	6.373	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-1496348	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-1496447	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-3169755	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	144084	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	144269	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	144335	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	0.0	0.0	
chr12	11721162	11721342	reg1000355.p1	6.372	+	BC044827 NM_006248	-172761	-	BC044827 K03205 K03206 BC141917 K03204 NM_005039 NM_199353 NM_199354 AX772842	-212736	-	BC130386 BC035362 K03207 NM_002723 BC128191	-257892	-	TSC_hg19_v1_chr12_+_11802659 AK289441	81421	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	81522	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	81734	+	BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_006248|PRB2|653247|proline-rich protein BstNI subfamily 2##BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##K03205|PRB1|5542|proline-rich protein BstNI subfamily 1##K03206|PRB1|5542|proline-rich protein BstNI subfamily 1##BC141917|PRB1|5542|proline-rich protein BstNI subfamily 1##K03204|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_005039|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199353|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199354|PRB1|5542|proline-rich protein BstNI subfamily 1##BC130386|PRB4|5545|proline-rich protein BstNI subfamily 4##BC035362|PRB4|5545|proline-rich protein BstNI subfamily 4##K03207|PRB4|5545|proline-rich protein BstNI subfamily 4##NM_002723|PRB4|5545|proline-rich protein BstNI subfamily 4##BC128191|PRB4|5545|proline-rich protein BstNI subfamily 4##AK289441|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6	0.060999	0.0	
chr16	72536150	72536294	reg1006726.p1	6.372	+	AK122925 NM_001160213	-329874	-	AL136795 AK315004 BC028423 AK093285 AX748032 NM_031293	-330179	-	NM_001142318	-408008	-	TSC_hg19_v1_chr16_+_72699031 AK021563	162842	+	TSC_hg19_v1_chr16_-_72991733 BC029653	455483	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	545999	-	AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AL136795|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK315004|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##BC028423|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##AK093285|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_031293|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001142318|TXNL4B|54957|thioredoxin-like 4B##BC029653|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3	0.879333	0.630018	CTCF.p2:-39:0.630	denovo_WM_7:46:0.461	denovo_WM_7:47:0.369
chr6	41501177	41501323	reg1006419.p1	6.371	+	NM_001199509 NM_001199510 NM_004828 AJ010099 AJ010100 BC166647	-197684	+	CU676054 DQ892009 DQ895198 AY074783 TSC_hg19_v1_chr6_-_41254418 AK223264 AK292162 AK301519 AK313104 BC017773 AF287008 NM_001242589 NM_001242590 NM_018643	-246826	-	AY358271 NM_198153 BC101780 BC105101 BC143652	-305182	+	TSC_hg19_v1_chr6_+_41514135 BC040962 NM_001012426 NM_001012427 NM_138457	12909	+	TSC_hg19_v1_chr6_+_41514342 BC052803	13087	+	TSC_hg19_v1_chr6_+_41606198 NM_005586 AK290735 BC007836 U78313	104972	+	NM_001199509|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_001199510|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_004828|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010099|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010100|NCR2|9436|natural cytotoxicity triggering receptor 2##BC166647|NCR2|9436|natural cytotoxicity triggering receptor 2##DQ892009|TREM1|54210|triggering receptor expressed on myeloid cells 1##DQ895198|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY074783|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK223264|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK292162|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK301519|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK313104|TREM1|54210|triggering receptor expressed on myeloid cells 1##BC017773|TREM1|54210|triggering receptor expressed on myeloid cells 1##AF287008|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242589|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242590|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_018643|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY358271|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##NM_198153|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC101780|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC105101|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC143652|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC040962|FOXP4|116113|forkhead box P4##NM_001012426|FOXP4|116113|forkhead box P4##NM_001012427|FOXP4|116113|forkhead box P4##NM_138457|FOXP4|116113|forkhead box P4##BC052803|FOXP4|116113|forkhead box P4##NM_005586|MDFI|4188|MyoD family inhibitor##AK290735|MDFI|4188|MyoD family inhibitor##BC007836|MDFI|4188|MyoD family inhibitor##U78313|MDFI|4188|MyoD family inhibitor	0.993706	0.0	denovo_WM_7:-35:0.784
chr14	104157461	104157641	reg1001966.p1	6.370	+	TSC_hg19_v1_chr14_+_104095547 NM_001130107 NM_005552 NM_182923 AK294508 BC008881 L04733 AF527736 AY180164	-61900	+	TSC_hg19_v1_chr14_+_104029325 AK299527 NM_032374 AK223092 AK223103 BC007412	-128240	+	TSC_hg19_v1_chr14_-_104028984 AB020680 NM_001015048	-128490	-	AK124498 TSC_hg19_v1_chr14_-_104178577	20957	-	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	24232	-	TSC_hg19_v1_chr14_+_104182144 NM_001198953 NM_024071 BC005999 AK057816 BC001130 AY395756 AK290519 BX248261	24565	+	NM_001130107|KLC1|3831|kinesin light chain 1##NM_005552|KLC1|3831|kinesin light chain 1##NM_182923|KLC1|3831|kinesin light chain 1##AK294508|KLC1|3831|kinesin light chain 1##BC008881|KLC1|3831|kinesin light chain 1##L04733|KLC1|3831|kinesin light chain 1##AF527736|KLC1|3831|kinesin light chain 1##AY180164|KLC1|3831|kinesin light chain 1##NM_032374|APOPT1|84334|apoptogenic 1##AK223092|APOPT1|84334|apoptogenic 1##AK223103|APOPT1|84334|apoptogenic 1##BC007412|APOPT1|84334|apoptogenic 1##AB020680|BAG5|9529|BCL2-associated athanogene 5##NM_001015048|BAG5|9529|BCL2-associated athanogene 5##AK124498|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001198953|ZFYVE21|79038|zinc finger, FYVE domain containing 21##NM_024071|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC005999|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK057816|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC001130|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AY395756|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK290519|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BX248261|ZFYVE21|79038|zinc finger, FYVE domain containing 21	0.996264	0.0	
chr17	59350125	59350282	reg1002987.p2	6.370	+	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	-594990	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-672514	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-672659	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	127033	+	TSC_hg19_v1_chr17_+_59477477 U28049	127293	+	TSC_hg19_v1_chr17_+_59477713 AL832900 AB209378	127514	+	NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2##AL832900|TBX2|6909|T-box 2##AB209378|TBX2|6909|T-box 2	0.0	0.0	
chr12	111841410	111841557	reg1004272.p2	6.369	+	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	-34573	-	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	-34637	-	BC151245 NM_015267 AB006631 AF271236	-369611	+	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	2266	+	AK126309 TSC_hg19_v1_chr12_-_111893987	52440	-	TSC_hg19_v1_chr12_-_112036257 AK095017	194792	-	BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##BC151245|CUX2|23316|cut-like homeobox 2##NM_015267|CUX2|23316|cut-like homeobox 2##AB006631|CUX2|23316|cut-like homeobox 2##AF271236|CUX2|23316|cut-like homeobox 2##AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3##AK095017|ATXN2|6311|ataxin 2	0.999849	0.0	
chr3	20119951	20120086	reg1006134.p1	6.369	+	BC070075 TSC_hg19_v1_chr3_+_20081907 BC060823 AB527402	-38108	+	NM_003884 U57317	-38495	+	BC105097 BC105099 BC021717 AK058178 NM_001252657	-66327	-	AB193056 AB193057 AB193058 AB193059 AB193060 AB193061 AB193062 AB193063 AB193064 AB193065 AB193066 TSC_hg19_v1_chr3_-_20227699 AB187577 AB187578 AB187579 AB187580 AB187581 AB187582 AB567656 AB567657 BC017867 BX648516 NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_138484 AK308095 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257	107656	-	AK026072 NM_024697	1672797	-	AK310298 TSC_hg19_v1_chr3_-_22414124	2294116	-	BC070075|KAT2B|8850|K(lysine) acetyltransferase 2B##BC060823|KAT2B|8850|K(lysine) acetyltransferase 2B##NM_003884|KAT2B|8850|K(lysine) acetyltransferase 2B##U57317|KAT2B|8850|K(lysine) acetyltransferase 2B##BC105097|PP2D1|151649|protein phosphatase 2C-like domain containing 1##BC105099|PP2D1|151649|protein phosphatase 2C-like domain containing 1##BC021717|PP2D1|151649|protein phosphatase 2C-like domain containing 1##AK058178|PP2D1|151649|protein phosphatase 2C-like domain containing 1##NM_001252657|PP2D1|151649|protein phosphatase 2C-like domain containing 1##AB193056|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193057|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193058|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193059|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193060|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193061|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193062|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193063|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193064|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193065|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193066|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187577|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187578|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187579|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187580|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187581|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187582|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567656|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567657|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC017867|SGOL1|151648|shugoshin-like 1 (S. pombe)##BX648516|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012409|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012410|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012411|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012412|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012413|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_138484|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK308095|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199251|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199252|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199253|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199254|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199255|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199256|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199257|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK026072|ZNF385D|79750|zinc finger protein 385D##NM_024697|ZNF385D|79750|zinc finger protein 385D##AK310298|ZNF385D|79750|zinc finger protein 385D	0.945712	0.0	denovo_WM_7:21:0.813
chr4	153605341	153605486	reg1007854.p1	6.368	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	-4213	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-147980	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-149119	-	BC037869 NM_145720	95490	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	95608	+	TSC_hg19_v1_chr4_+_153701117 AK290472 U52521 BC103759 BC105114 BC105116 BC143675 BC143676 AK096509	95714	+	BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK290472|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##U52521|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC103759|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105114|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105116|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143675|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143676|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK096509|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	0.0	0.0	
chr16	30470203	30470383	reg1005047.p1	6.367	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-13064	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-13111	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-28954	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	13707	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	13779	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	13840	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.0	0.0	
chr6	90545051	90545203	reg1007574.p1	6.367	+	BC012574 TSC_hg19_v1_chr6_+_90539629 BC027850 AF154415 BC029386 BC132828 BC132830	-5428	+	TSC_hg19_v1_chr6_+_90539598 BC056685 NM_001137667 NM_001137668 NM_012115	-5533	+	TSC_hg19_v1_chr6_-_90529484 AK124025	-15621	-	AB527151 AF296766 NM_032602	59059	+	AJ271878 TSC_hg19_v1_chr6_-_91006556 NM_021813	461384	-	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	461485	-	BC012574|CASP8AP2|9994|caspase 8 associated protein 2##BC027850|CASP8AP2|9994|caspase 8 associated protein 2##AF154415|CASP8AP2|9994|caspase 8 associated protein 2##BC029386|CASP8AP2|9994|caspase 8 associated protein 2##BC132828|CASP8AP2|9994|caspase 8 associated protein 2##BC132830|CASP8AP2|9994|caspase 8 associated protein 2##BC056685|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137667|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137668|CASP8AP2|9994|caspase 8 associated protein 2##NM_012115|CASP8AP2|9994|caspase 8 associated protein 2##AK124025|MDN1|23195|MDN1, midasin homolog (yeast)##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa##AJ271878|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_021813|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2	0.873375	0.0	denovo_WM_7:0:0.861
chr14	93639539	93639633	reg1008166.p1	6.366	+	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	-57372	-	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	-57995	-	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-249989	+	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	11614	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	11659	-	AK315522 TSC_hg19_v1_chr14_-_93651261	11682	-	BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##AK315522|MOAP1|64112|modulator of apoptosis 1	0.994096	0.0	denovo_WM_7:38:0.814
chr18	54338450	54338546	reg1005990.p2	6.366	+	TSC_hg19_v1_chr18_+_54318593 AK057141 NM_015285 NM_052834 AB011113 BC150282	-19892	+	TSC_hg19_v1_chr18_-_54305956 BC001156 AF003938 NM_004786	-32584	-	AB209263 DQ891846 DQ895034 EU176640 TSC_hg19_v1_chr18_-_54305824 AF051896 AF052659 AK313653	-32751	-	TSC_hg19_v1_chr18_+_54424445 BC050352	85950	+	AK127964 TSC_hg19_v1_chr18_+_54814333 BC021740 BC035018 AK301799	475841	+	AB208996 NM_015879	681222	+	AK057141|WDR7|23335|WD repeat domain 7##NM_015285|WDR7|23335|WD repeat domain 7##NM_052834|WDR7|23335|WD repeat domain 7##AB011113|WDR7|23335|WD repeat domain 7##BC150282|WDR7|23335|WD repeat domain 7##BC001156|TXNL1|9352|thioredoxin-like 1##AF003938|TXNL1|9352|thioredoxin-like 1##NM_004786|TXNL1|9352|thioredoxin-like 1##AB209263|TXNL1|9352|thioredoxin-like 1##DQ891846|TXNL1|9352|thioredoxin-like 1##DQ895034|TXNL1|9352|thioredoxin-like 1##EU176640|TXNL1|9352|thioredoxin-like 1##AF051896|TXNL1|9352|thioredoxin-like 1##AF052659|TXNL1|9352|thioredoxin-like 1##AK313653|TXNL1|9352|thioredoxin-like 1##BC050352|WDR7|23335|WD repeat domain 7##AK127964|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##BC021740|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##BC035018|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##AK301799|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##AB208996|ST8SIA3|51046|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3##NM_015879|ST8SIA3|51046|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	0.992524	0.0	denovo_WM_7:32:0.248	denovo_WM_7:33:0.248	denovo_WM_7:34:0.248	denovo_WM_7:35:0.248
chr19	4868103	4868194	reg1004920.p2	6.366	+	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	-406	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	-483	-	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	-503	-	NM_001080523	34730	-	TSC_hg19_v1_chr19_+_4909512 AK307239 AK303361 NM_001048201 AK074377 AK314579	41351	+	TSC_hg19_v1_chr19_+_4910185 AK289389	42030	+	AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##NM_001080523|ARRDC5|645432|arrestin domain containing 5##AK307239|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK303361|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_001048201|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK074377|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK314579|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1	0.996942	0.0	denovo_WM_7:14:0.841
chr16	75657325	75657504	reg1006182.p2	6.365	+	AK001687 AK314652 TSC_hg19_v1_chr16_-_75657163 BC002758 AK296834 NM_012091	-228	-	AK289788 TSC_hg19_v1_chr16_+_75600276 AF087848 AK311266 AF077046 AJ010569 BC014594 BC005985 AB463663 AM393324 DQ893101 DQ896373 CR542217	-57084	+	AB030710 NM_007285 TSC_hg19_v1_chr16_+_75600274 BC029601	-57153	+	BC013246 CU678582 DQ892301 DQ895500 TSC_hg19_v1_chr16_-_75681564 BC004132 D31890 AF285758 AK126584 D32053 AK315687 NM_001130089 NM_005548	24147	-	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	24293	+	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	653826	+	AK001687|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK314652|ADAT1|23536|adenosine deaminase, tRNA-specific 1##BC002758|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK296834|ADAT1|23536|adenosine deaminase, tRNA-specific 1##NM_012091|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK289788|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AF087848|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AK311266|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AF077046|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AJ010569|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC014594|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC005985|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AM393324|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##DQ893101|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##DQ896373|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##CR542217|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AB030710|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##NM_007285|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC029601|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC013246|KARS|3735|lysyl-tRNA synthetase##DQ892301|KARS|3735|lysyl-tRNA synthetase##DQ895500|KARS|3735|lysyl-tRNA synthetase##BC004132|KARS|3735|lysyl-tRNA synthetase##D31890|KARS|3735|lysyl-tRNA synthetase##AF285758|KARS|3735|lysyl-tRNA synthetase##AK126584|KARS|3735|lysyl-tRNA synthetase##D32053|KARS|3735|lysyl-tRNA synthetase##AK315687|KARS|3735|lysyl-tRNA synthetase##NM_001130089|KARS|3735|lysyl-tRNA synthetase##NM_005548|KARS|3735|lysyl-tRNA synthetase##AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4	0.983053	0.0	denovo_WM_7:21:0.863
chr1	207578378	207578484	reg1005280.p2	6.363	+	TSC_hg19_v1_chr1_+_207495092 AB240566 AB240567 AB240568 DQ890776 DQ893935 CU674648 BT007159 M15799	-83326	+	TSC_hg19_v1_chr1_+_207495084 AB240569 AB240570	-83354	+	TSC_hg19_v1_chr1_+_207495024 AK312448 AK300621 AK298549 BC001288 M30142 M31516	-83396	+	X68990 NM_001006658 NM_001877 BC136394 BC032548 AK223627 AK301496 M26004 J03565 BC090937 Y00649	49230	+	NM_000573 NM_000651 AK309342 AK298486 Y00816 BC032550 X14362	91147	+	NM_175710 BC109190 BC109191	240056	+	AB240566|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AB240567|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AB240568|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##DQ890776|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##DQ893935|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##BT007159|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M15799|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AB240569|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AB240570|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK312448|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK300621|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK298549|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##BC001288|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M30142|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M31516|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##NM_001006658|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##NM_001877|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##BC136394|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##BC032548|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##AK223627|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##AK301496|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##M26004|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##J03565|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##BC090937|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##Y00649|CR2|1380|complement component (3d/Epstein Barr virus) receptor 2##NM_000573|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##NM_000651|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##AK309342|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##AK298486|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##Y00816|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##BC032550|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##X14362|CR1|1378|complement component (3b/4b) receptor 1 (Knops blood group)##NM_175710|CR1L|1379|complement component (3b/4b) receptor 1-like##BC109190|CR1L|1379|complement component (3b/4b) receptor 1-like##BC109191|CR1L|1379|complement component (3b/4b) receptor 1-like	0.08096	0.682895	CTCF.p2:23:0.683
chr9	33000752	33000905	reg1007125.p1	6.363	+	AK125320 NM_212558 BX647550	-217312	+	BC116181 BC116182 AF390562 NM_153809	-365188	-	CR456920 TSC_hg19_v1_chr9_-_32573139 AF035840 BC029247 AK289702 AF067167 BC009801 NM_001199987 NM_002493 NM_182739	-427706	-	AY208839 AY208836 AY208835 AY208833 NM_001195249 AK131046 AB528955 TSC_hg19_v1_chr9_-_33001627 AY208831 AY208837 AY208834 NM_001195254 AY040777 AY208829 AY208832 BC068107 AY208840 AJ565850 AJ565851 AJ565852 BX538161 AK055672 AY208830 NM_001195248 NM_001195250 NM_001195251 NM_001195252 NM_175069 NM_175073	750	-	TSC_hg19_v1_chr9_+_33025226 NM_001539	24400	+	TSC_hg19_v1_chr9_+_33025272 AK289623 AK298725 AY186741 D13388 BC008182	24450	+	AK125320|TMEM215|401498|transmembrane protein 215##NM_212558|TMEM215|401498|transmembrane protein 215##BX647550|TMEM215|401498|transmembrane protein 215##BC116181|TAF1L|138474|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like##BC116182|TAF1L|138474|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like##AF390562|TAF1L|138474|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like##NM_153809|TAF1L|138474|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like##CR456920|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##AF035840|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##BC029247|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##AK289702|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##AF067167|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##BC009801|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##NM_001199987|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##NM_002493|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##NM_182739|NDUFB6|4712|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa##AY208839|APTX|54840|aprataxin##AY208836|APTX|54840|aprataxin##AY208835|APTX|54840|aprataxin##AY208833|APTX|54840|aprataxin##NM_001195249|APTX|54840|aprataxin##AK131046|APTX|54840|aprataxin##AY208831|APTX|54840|aprataxin##AY208837|APTX|54840|aprataxin##AY208834|APTX|54840|aprataxin##NM_001195254|APTX|54840|aprataxin##AY040777|APTX|54840|aprataxin##AY208829|APTX|54840|aprataxin##AY208832|APTX|54840|aprataxin##BC068107|APTX|54840|aprataxin##AY208840|APTX|54840|aprataxin##AJ565850|APTX|54840|aprataxin##AJ565851|APTX|54840|aprataxin##AJ565852|APTX|54840|aprataxin##BX538161|APTX|54840|aprataxin##AK055672|APTX|54840|aprataxin##AY208830|APTX|54840|aprataxin##NM_001195248|APTX|54840|aprataxin##NM_001195250|APTX|54840|aprataxin##NM_001195251|APTX|54840|aprataxin##NM_001195252|APTX|54840|aprataxin##NM_175069|APTX|54840|aprataxin##NM_175073|APTX|54840|aprataxin##NM_001539|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##AK289623|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##AK298725|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##AY186741|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##D13388|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##BC008182|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1	1.987699	0.0	denovo_WM_7:7:0.266	denovo_WM_7:8:0.248	denovo_WM_7:9:0.476	denovo_WM_7:23:0.215	denovo_WM_7:24:0.690
chr1	230348521	230348635	reg1005849.p2	6.362	+	TSC_hg19_v1_chr1_+_230203016 AK296886 AK290048 AK304029 AB591001 X85019	-145582	+	TSC_hg19_v1_chr1_+_230202957 BC041120 NM_004481	-145636	+	TSC_hg19_v1_chr1_+_229761993 BC114559 BC114963	-586564	+	BC150638 NM_024554	164812	-	TSC_hg19_v1_chr1_+_230778205 NM_001145036 NM_007357	429618	+	TSC_hg19_v1_chr1_+_230778250 AL832190 BC014960 AK302791	429655	+	AK296886|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK290048|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK304029|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##X85019|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC041120|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##NM_004481|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC114559|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC114963|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC150638|PGBD5|79605|piggyBac transposable element derived 5##NM_024554|PGBD5|79605|piggyBac transposable element derived 5##NM_001145036|COG2|22796|component of oligomeric golgi complex 2##NM_007357|COG2|22796|component of oligomeric golgi complex 2##AL832190|COG2|22796|component of oligomeric golgi complex 2##BC014960|COG2|22796|component of oligomeric golgi complex 2##AK302791|COG2|22796|component of oligomeric golgi complex 2	0.789698	0.0	denovo_WM_7:-61:0.653
chr12	46124603	46124753	reg1006924.p2	6.362	+	TSC_hg19_v1_chr12_+_46123498 AB527360 AY727870 DQ096628 NM_152641 CR749833	-1081	+	TSC_hg19_v1_chr12_+_46123488 AK127872	-1195	+	TSC_hg19_v1_chr12_-_46121531 BC047417	-3148	-	AB463286 TSC_hg19_v1_chr12_-_46357972	233282	-	BC017851 TSC_hg19_v1_chr12_-_46384277	259575	-	TSC_hg19_v1_chr12_-_46384319 AK302999	259647	-	AY727870|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##DQ096628|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##NM_152641|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##CR749833|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##BC047417|LOC400027|400027|uncharacterized LOC400027##BC017851|SCAF11|9169|SR-related CTD-associated factor 11##AK302999|SCAF11|9169|SR-related CTD-associated factor 11	0.999901	0.0	
chr17	5129068	5129248	reg1002121.p1	6.362	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-33778	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-33985	-	AY143550 NM_004505 X63546 X63547	-97472	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	8943	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	56508	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	193767	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.996914	0.0	denovo_WM_7:-92:0.907
chr2	44419097	44419243	reg1006828.p2	6.362	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-23060	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-23155	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-196031	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	83465	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	167700	-	DQ023503 DQ023504 DQ023505 NM_006036	168642	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.97166	0.0	denovo_WM_7:69:0.560
chr17	77812327	77812470	reg1006051.p2	6.360	+	TSC_hg19_v1_chr17_-_77770845 AB384672 CU679333 EU446831 BC008937 BC019289 AF266479 BC009376 AF174482 AK074560 NM_020649	-41491	-	TSC_hg19_v1_chr17_+_77751988 AX721084 AX721090 NM_005189 NM_032647 BC004252 BC119759 BC119760 AB463499 CU678640 EU446542	-60417	+	AY230663 BC041453 NM_178543 AY358622	-107509	+	AY390430 CU677141 AB463501 BC014967 TSC_hg19_v1_chr17_-_77813168 NM_003655 EU439707 AF013956	744	-	BC044939 TSC_hg19_v1_chr17_+_77893233	80801	+	TSC_hg19_v1_chr17_-_78009672 BC028290 NM_019020	197204	-	EU446831|CBX8|57332|chromobox homolog 8##BC008937|CBX8|57332|chromobox homolog 8##BC019289|CBX8|57332|chromobox homolog 8##AF266479|CBX8|57332|chromobox homolog 8##BC009376|CBX8|57332|chromobox homolog 8##AF174482|CBX8|57332|chromobox homolog 8##AK074560|CBX8|57332|chromobox homolog 8##NM_020649|CBX8|57332|chromobox homolog 8##NM_005189|CBX2|84733|chromobox homolog 2##NM_032647|CBX2|84733|chromobox homolog 2##BC004252|CBX2|84733|chromobox homolog 2##BC119759|CBX2|84733|chromobox homolog 2##BC119760|CBX2|84733|chromobox homolog 2##EU446542|CBX2|84733|chromobox homolog 2##AY230663|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##BC041453|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##NM_178543|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##AY358622|ENPP7|339221|ectonucleotide pyrophosphatase/phosphodiesterase 7##AY390430|CBX4|8535|chromobox homolog 4##BC014967|CBX4|8535|chromobox homolog 4##NM_003655|CBX4|8535|chromobox homolog 4##EU439707|CBX4|8535|chromobox homolog 4##AF013956|CBX4|8535|chromobox homolog 4##BC028290|TBC1D16|125058|TBC1 domain family, member 16##NM_019020|TBC1D16|125058|TBC1 domain family, member 16	0.916934	0.0	denovo_WM_7:15:0.296
chr19	54884044	54884141	reg1005131.p2	6.360	+	AK303261 TSC_hg19_v1_chr19_-_54882123 AK097869	-2000	-	TSC_hg19_v1_chr19_-_54876672 NM_002287 NM_021706	-7397	-	TSC_hg19_v1_chr19_-_54876541 AK290415 AK315419	-7541	-	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	42559	+	AB162930 TSC_hg19_v1_chr19_+_54926723	42630	+	NM_052925	75972	+	AK303261|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK097869|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_002287|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_021706|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK290415|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK315419|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8	1.036205	0.0	denovo_WM_7:14:0.300	denovo_WM_7:15:0.300	denovo_WM_7:16:0.329
chr3	47085841	47086021	reg1006754.p1	6.360	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	-56461	+	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	-64684	+	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	-67686	-	TSC_hg19_v1_chr3_-_47098906 AK026837	13012	-	AB384629 TSC_hg19_v1_chr3_-_47205422 AK131371 NM_014159	119508	-	BC015311 NM_001134878 NM_022342 NM_182902	238364	-	AK092871|NBEAL2|23218|neurobeachin-like 2##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##AK026837|SETD2|29072|SET domain containing 2##AK131371|SETD2|29072|SET domain containing 2##NM_014159|SETD2|29072|SET domain containing 2##BC015311|KIF9|64147|kinesin family member 9##NM_001134878|KIF9|64147|kinesin family member 9##NM_022342|KIF9|64147|kinesin family member 9##NM_182902|KIF9|64147|kinesin family member 9	2.057872	0.0	
chr14	75988615	75988785	reg1006928.p2	6.359	+	BC051303 NM_001135049	-89864	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	-93687	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	-94059	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	90	+	TSC_hg19_v1_chr14_+_75988840 D42106	152	+	NM_017791 AY260572 AY260577 BC019087 AK000378	56265	+	BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2	0.781794	0.0	denovo_WM_7:-27:0.540
chr19	19778889	19779069	reg1006953.p1	6.359	+	TSC_hg19_v1_chr19_-_19774501 NM_020410	-4470	-	AB058728 AB385506 TSC_hg19_v1_chr19_-_19774486 AK056420	-4495	-	TSC_hg19_v1_chr19_-_19754452 NM_016573	-24524	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	678	+	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	64868	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	108226	-	NM_020410|ATP13A1|57130|ATPase type 13A1##AB058728|ATP13A1|57130|ATPase type 13A1##AK056420|ATP13A1|57130|ATPase type 13A1##NM_016573|GMIP|51291|GEM interacting protein##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440	0.998957	0.0	denovo_WM_7:-74:0.314	denovo_WM_7:-75:0.314	denovo_WM_7:-76:0.314
chr3	168251405	168251543	reg1006075.p1	6.359	+	TSC_hg19_v1_chr3_-_167813684 AK307718 AK307557 NM_014498	-438043	-	TSC_hg19_v1_chr3_-_167813072 U55853 BC143232 BC143233 BC171748	-438359	-	NM_001122752 TSC_hg19_v1_chr3_+_167453508 AK290082 BC018043 NM_005025 CR627434 Z81326	-797985	+	BC130520 BC143951 BC143952 AF164154 AF164155 AF164156 AF164157 NM_001105077 NM_001163999 NM_005241 X54989	612605	-	TSC_hg19_v1_chr3_-_168864325 AK292865 AF487422 NM_001105078	612888	-	BX640908 NM_001164000	614047	-	AK307718|GOLIM4|27333|golgi integral membrane protein 4##AK307557|GOLIM4|27333|golgi integral membrane protein 4##NM_014498|GOLIM4|27333|golgi integral membrane protein 4##U55853|GOLIM4|27333|golgi integral membrane protein 4##BC143232|GOLIM4|27333|golgi integral membrane protein 4##BC143233|GOLIM4|27333|golgi integral membrane protein 4##BC171748|GOLIM4|27333|golgi integral membrane protein 4##NM_001122752|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##AK290082|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC018043|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##NM_005025|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##CR627434|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##Z81326|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC130520|MECOM|2122|MDS1 and EVI1 complex locus##BC143951|MECOM|2122|MDS1 and EVI1 complex locus##BC143952|MECOM|2122|MDS1 and EVI1 complex locus##AF164154|MECOM|2122|MDS1 and EVI1 complex locus##AF164155|MECOM|2122|MDS1 and EVI1 complex locus##AF164156|MECOM|2122|MDS1 and EVI1 complex locus##AF164157|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105077|MECOM|2122|MDS1 and EVI1 complex locus##NM_001163999|MECOM|2122|MDS1 and EVI1 complex locus##NM_005241|MECOM|2122|MDS1 and EVI1 complex locus##X54989|MECOM|2122|MDS1 and EVI1 complex locus##AK292865|MECOM|2122|MDS1 and EVI1 complex locus##AF487422|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105078|MECOM|2122|MDS1 and EVI1 complex locus##BX640908|MECOM|2122|MDS1 and EVI1 complex locus##NM_001164000|MECOM|2122|MDS1 and EVI1 complex locus	0.999147	0.0	denovo_WM_7:-12:0.841
chr5	28544843	28544991	reg1006575.p2	6.359	+	TSC_hg19_v1_chr5_+_27472410 BC039509 BC046201 BC101438 BC101441 BC101982 BC122523	-1072514	+	BC107594 BC109384 BC113745 AB035302 AK307779 NM_016279 AK308697	-1506246	-	NM_006727	-3899833	-	NM_004932 TSC_hg19_v1_chr5_+_31193792 AK291290	2648879	+	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	2648960	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	2987305	-	BC039509|LOC643401|643401|uncharacterized LOC643401##BC046201|LOC643401|643401|uncharacterized LOC643401##BC101438|LOC643401|643401|uncharacterized LOC643401##BC101982|LOC643401|643401|uncharacterized LOC643401##BC122523|LOC643401|643401|uncharacterized LOC643401##BC107594|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC109384|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC113745|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AB035302|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK307779|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_016279|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK308697|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_006727|CDH10|1008|cadherin 10, type 2 (T2-cadherin)##NM_004932|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK291290|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III	0.91357	0.0	denovo_WM_7:52:0.676
chr7	102107163	102107331	reg1007012.p1	6.359	+	TSC_hg19_v1_chr7_+_102105459 AB209379 CU688900	-1755	+	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	-1839	+	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	-1930	-	DQ893151 DQ896446 TSC_hg19_v1_chr7_-_102119367 X98433 BC040116 BC024165 BC141830 BC139902 BC065711 L37127 X82385 AK290515 NM_006234	12096	-	AK302217 NM_001031618 NM_001166339	84431	+	AJ277739 AJ277740 AJ277741 AB384935 BC056864 BC071870 TSC_hg19_v1_chr7_-_102212997 BC044209 BC050598	105740	-	AB209379|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##DQ893151|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##DQ896446|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##X98433|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC040116|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC024165|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC141830|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC139902|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC065711|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##L37127|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##X82385|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##AK290515|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##NM_006234|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##AJ277739|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AJ277740|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##AJ277741|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2	1.988895	0.0	denovo_WM_7:-9:0.209	denovo_WM_7:-31:0.208
chr3	44552505	44552639	reg1007053.p2	6.358	+	TSC_hg19_v1_chr3_-_44552121 AK296954	-449	-	TSC_hg19_v1_chr3_-_44552109 BC014381	-476	-	TSC_hg19_v1_chr3_-_44519163 AY295873 NM_181489	-33413	-	TSC_hg19_v1_chr3_+_44596684 AK291285 AY280798 NM_018651 NM_025169 BC063020 AK022800 BC010555	44100	+	TSC_hg19_v1_chr3_+_44626458 AK094189 NM_173658	73884	+	TSC_hg19_v1_chr3_+_44666527 AY279353 NM_001024855 NM_006991 AK314196 AY074878 BC031209	113971	+	AK296954|ZNF852|285346|zinc finger protein 852##BC014381|ZNF852|285346|zinc finger protein 852##AY295873|ZNF445|353274|zinc finger protein 445##NM_181489|ZNF445|353274|zinc finger protein 445##AK291285|ZNF167|55888|zinc finger protein 167##AY280798|ZNF167|55888|zinc finger protein 167##NM_018651|ZNF167|55888|zinc finger protein 167##NM_025169|ZNF167|55888|zinc finger protein 167##BC063020|ZNF167|55888|zinc finger protein 167##AK022800|ZNF167|55888|zinc finger protein 167##BC010555|ZNF167|55888|zinc finger protein 167##AK094189|ZNF660|285349|zinc finger protein 660##NM_173658|ZNF660|285349|zinc finger protein 660##AY279353|ZNF197|10168|zinc finger protein 197##NM_001024855|ZNF197|10168|zinc finger protein 197##NM_006991|ZNF197|10168|zinc finger protein 197##AK314196|ZNF197|10168|zinc finger protein 197##AY074878|ZNF197|10168|zinc finger protein 197##BC031209|ZNF197|10168|zinc finger protein 197	0.994069	0.0	denovo_WM_7:10:0.734
chr9	37163375	37163534	reg1006508.p2	6.358	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-42871	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-42946	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-42968	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	259252	+	BC010007 TSC_hg19_v1_chr9_-_37465267	301806	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	301941	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	1.933373	0.0	denovo_WM_7:-46:0.876	denovo_WM_7:-61:0.308	denovo_WM_7:-62:0.311	denovo_WM_7:-63:0.343
chr1	212336313	212336482	reg1005825.p2	6.357	+	TSC_hg19_v1_chr1_+_212209137 AF195765 AK299649 BC033297 AK027651 CU689622 CU689648 DQ641253	-127217	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	-127279	+	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	-127383	+	TSC_hg19_v1_chr1_+_212458776 AK312530	122381	+	TSC_hg19_v1_chr1_+_212458867 L42373 NM_006243	122475	+	BC110883 TSC_hg19_v1_chr1_+_212459259	122817	+	AF195765|DTL|51514|denticleless homolog (Drosophila)##AK299649|DTL|51514|denticleless homolog (Drosophila)##BC033297|DTL|51514|denticleless homolog (Drosophila)##AK027651|DTL|51514|denticleless homolog (Drosophila)##DQ641253|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##AK312530|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##L42373|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##NM_006243|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC110883|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha	0.999414	0.0	
chr5	157289777	157289898	reg1005004.p2	6.357	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-3747	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-105457	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-119097	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	1236620	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	1236905	-	AK304228 NM_001199382	1344811	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.986175	0.025493	denovo_WM_7:59:0.807
chr2	70347480	70347644	reg1000808.p1	6.356	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-32564	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-32645	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-32735	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	70559	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	128157	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	137688	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	1.926096	0.0	denovo_WM_7:31:0.358	denovo_WM_7:33:0.346	denovo_WM_7:-55:0.449	denovo_WM_7:-56:0.449
chr11	70129200	70129337	reg1006719.p1	6.354	+	TSC_hg19_v1_chr11_+_70116841 BC034046 AB209314	-12407	+	TSC_hg19_v1_chr11_+_70116795 NM_003626 NM_177423	-12464	+	NM_003824 TSC_hg19_v1_chr11_+_70049420 AK291005 AK293320 BC000334 X84709 U24231 BC025733 EU176185 AB587588 AY423721 BT006927 CR456738	-79852	+	D49354 TSC_hg19_v1_chr11_+_70194450	65153	+	TSC_hg19_v1_chr11_-_70244476 AK125463	115247	-	TSC_hg19_v1_chr11_+_70244653 NM_001184740 NM_005231 NM_138565 AK222613 AK291097 BC033889 BC008799 M98343	115385	+	BC034046|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##AB209314|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##NM_003626|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##NM_177423|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##NM_003824|FADD|8772|Fas (TNFRSF6)-associated via death domain##AK291005|FADD|8772|Fas (TNFRSF6)-associated via death domain##BC000334|FADD|8772|Fas (TNFRSF6)-associated via death domain##X84709|FADD|8772|Fas (TNFRSF6)-associated via death domain##U24231|FADD|8772|Fas (TNFRSF6)-associated via death domain##BC025733|FADD|8772|Fas (TNFRSF6)-associated via death domain##EU176185|FADD|8772|Fas (TNFRSF6)-associated via death domain##AY423721|FADD|8772|Fas (TNFRSF6)-associated via death domain##BT006927|FADD|8772|Fas (TNFRSF6)-associated via death domain##CR456738|FADD|8772|Fas (TNFRSF6)-associated via death domain##D49354|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##NM_001184740|CTTN|2017|cortactin##NM_005231|CTTN|2017|cortactin##NM_138565|CTTN|2017|cortactin##AK222613|CTTN|2017|cortactin##AK291097|CTTN|2017|cortactin##BC033889|CTTN|2017|cortactin##BC008799|CTTN|2017|cortactin##M98343|CTTN|2017|cortactin	0.997642	0.0	denovo_WM_7:0:0.470	denovo_WM_7:-1:0.527
chr19	14495656	14495794	reg1003571.p1	6.354	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	-3470	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	-3676	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-178677	-	TSC_hg19_v1_chr19_-_14529877 AK301847	34164	-	TSC_hg19_v1_chr19_-_14530152 BC001009 BC032128 BC010455 AK293911	34415	-	TSC_hg19_v1_chr19_-_14530193 U90426 NM_005804	34449	-	AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC001009|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC032128|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC010455|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK293911|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##U90426|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##NM_005804|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	1.491615	0.0	
chr19	41258447	41258601	reg1004804.p2	6.354	+	TSC_hg19_v1_chr19_+_41257100 AK293140 AK313182 X06347 BC008290 AB464219 CU674198	-1325	+	NM_004596 TSC_hg19_v1_chr19_+_41256782 BC000405	-1748	+	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	-2122	-	NM_001202553	22557	+	NM_006533 X75450 BC005910 BT007044 CR541648	22840	+	TSC_hg19_v1_chr19_+_41284141 NM_016154	25580	+	AK293140|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK313182|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##X06347|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC008290|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##NM_004596|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC000405|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54##NM_001202553|MIA|8190|melanoma inhibitory activity##NM_006533|MIA|8190|melanoma inhibitory activity##X75450|MIA|8190|melanoma inhibitory activity##BC005910|MIA|8190|melanoma inhibitory activity##BT007044|MIA|8190|melanoma inhibitory activity##CR541648|MIA|8190|melanoma inhibitory activity##NM_016154|RAB4B|53916|RAB4B, member RAS oncogene family	0.998862	0.0	
chr22	31873382	31873517	reg1005741.p2	6.353	+	TSC_hg19_v1_chr22_+_31795589 AK315659 BC019285 AJ005940 BC020803 AF078103 AK098576 CR456488 DQ890690 DQ893872 CU013048 CU013336 CU676724 AB463011 BT007237 CR542059	-77824	+	NM_004147 TSC_hg19_v1_chr22_+_31795576	-77892	+	TSC_hg19_v1_chr22_+_31742744 BC004550 CR456348 AK000471 CU013058 CU013346	-130619	+	BC033028 NM_001164501 TSC_hg19_v1_chr22_-_31885678 AF240775	12158	-	TSC_hg19_v1_chr22_-_31885761 BC012734	12295	-	TSC_hg19_v1_chr22_-_31885787 BC032941 AK314636 NM_001164502 NM_019843 DQ655937	12398	-	AK315659|DRG1|4733|developmentally regulated GTP binding protein 1##BC019285|DRG1|4733|developmentally regulated GTP binding protein 1##AJ005940|DRG1|4733|developmentally regulated GTP binding protein 1##BC020803|DRG1|4733|developmentally regulated GTP binding protein 1##AF078103|DRG1|4733|developmentally regulated GTP binding protein 1##AK098576|DRG1|4733|developmentally regulated GTP binding protein 1##CR456488|DRG1|4733|developmentally regulated GTP binding protein 1##DQ890690|DRG1|4733|developmentally regulated GTP binding protein 1##DQ893872|DRG1|4733|developmentally regulated GTP binding protein 1##CU013048|DRG1|4733|developmentally regulated GTP binding protein 1##CU013336|DRG1|4733|developmentally regulated GTP binding protein 1##BT007237|DRG1|4733|developmentally regulated GTP binding protein 1##CR542059|DRG1|4733|developmentally regulated GTP binding protein 1##NM_004147|DRG1|4733|developmentally regulated GTP binding protein 1##BC004550|FLJ20464|54944|uncharacterized protein FLJ20464##CR456348|FLJ20464|54944|uncharacterized protein FLJ20464##AK000471|FLJ20464|54944|uncharacterized protein FLJ20464##BC033028|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_001164501|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AF240775|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##BC012734|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##BC032941|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AK314636|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_001164502|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_019843|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##DQ655937|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1	1.979483	0.0	
chr2	47151377	47151499	reg1004392.p2	6.352	+	NM_001171507 NM_001171510	-8188	-	TSC_hg19_v1_chr2_-_47142950 NM_001171506 NM_001171509 NM_139279	-8450	-	TSC_hg19_v1_chr2_-_47142939 AL833900 AF537214 CR749562	-8495	-	AL834383 NM_020458 TSC_hg19_v1_chr2_+_47168358	16898	+	TSC_hg19_v1_chr2_+_47168400 BC047709 BC111487	16965	+	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	17435	-	NM_001171507|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171510|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171506|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171509|MCFD2|90411|multiple coagulation factor deficiency 2##NM_139279|MCFD2|90411|multiple coagulation factor deficiency 2##AL833900|MCFD2|90411|multiple coagulation factor deficiency 2##AF537214|MCFD2|90411|multiple coagulation factor deficiency 2##CR749562|MCFD2|90411|multiple coagulation factor deficiency 2##AL834383|TTC7A|57217|tetratricopeptide repeat domain 7A##NM_020458|TTC7A|57217|tetratricopeptide repeat domain 7A##BC111487|TTC7A|57217|tetratricopeptide repeat domain 7A##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2	1.563562	0.0	denovo_WM_7:-58:0.389
chr5	68007401	68007522	reg1006453.p1	6.352	+	AK094785 NM_001242466 AK294919	-419009	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	-420915	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	-423167	+	NM_001251969 NM_022902 NM_024055 BC017441 TSC_hg19_v1_chr5_+_68389821	382342	+	TSC_hg19_v1_chr5_+_68389892 AY358505 AF461760	382421	+	AK292925 TSC_hg19_v1_chr5_+_68389913	382452	+	AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001251969|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_022902|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_024055|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC017441|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AY358505|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AF461760|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK292925|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5	0.447654	0.0	denovo_WM_7:-18:0.350
chr20	52346538	52346668	reg1004818.p2	6.351	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-135804	-	AF041259 NM_006526	-146968	-	AK302570 NM_001193421	-544782	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	340459	-	AK315220 NM_003657	340700	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	443917	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.961695	0.0	denovo_WM_7:35:0.648
chr4	36992237	36992350	reg1006514.p1	6.351	+	BC157885 NM_001170700	-706650	+	AK131492 NM_001136536 AK304357 AK316523	-709047	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	-746256	-	NM_001144990	254396	+	NM_001104629 BC037906	463282	+	AK001879 NM_018302 AK225192	593576	+	BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_001144990|KIAA1239|57495|KIAA1239##NM_001104629|C4orf19|55286|chromosome 4 open reading frame 19##BC037906|C4orf19|55286|chromosome 4 open reading frame 19##AK001879|C4orf19|55286|chromosome 4 open reading frame 19##NM_018302|C4orf19|55286|chromosome 4 open reading frame 19##AK225192|C4orf19|55286|chromosome 4 open reading frame 19	0.0	0.0	
chr3	45699940	45700078	reg1005023.p1	6.350	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	-63738	+	TSC_hg19_v1_chr3_+_45635397 M80651	-64424	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-269945	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	30724	+	TSC_hg19_v1_chr3_+_45730846 AK291142	30848	+	TSC_hg19_v1_chr3_+_45730887 AB020658 AK301248	30880	+	BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##M80651|LIMD1|8994|LIM domains containing 1##AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK291142|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AB020658|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK301248|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	1.990075	0.0	denovo_WM_7:26:0.432	denovo_WM_7:27:0.288	denovo_WM_7:42:0.320	denovo_WM_7:43:0.464
chr6	72093737	72093838	reg1005523.p2	6.350	+	TSC_hg19_v1_chr6_+_71998514 BC110999	-95263	+	TSC_hg19_v1_chr6_+_71998513 BC018688	-95277	+	NM_024576 TSC_hg19_v1_chr6_+_71998479	-95301	+	AK023251 TSC_hg19_v1_chr6_-_72130545	36713	-	AB045726 AB051866 TSC_hg19_v1_chr6_+_72596447	502641	+	BC151853 AB002338 BC152435 NM_014989 TSC_hg19_v1_chr6_+_72596658	502866	+	BC110999|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##AK023251|LINC00472|79940|long intergenic non-protein coding RNA 472##AB045726|RIMS1|22999|regulating synaptic membrane exocytosis 1##AB051866|RIMS1|22999|regulating synaptic membrane exocytosis 1##BC151853|RIMS1|22999|regulating synaptic membrane exocytosis 1##AB002338|RIMS1|22999|regulating synaptic membrane exocytosis 1##BC152435|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_014989|RIMS1|22999|regulating synaptic membrane exocytosis 1	0.966197	0.862631	CTCF.p2:-4:0.863	denovo_WM_7:-60:0.950
chr8	119511476	119511656	reg1006839.p1	6.350	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-387605	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-978524	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-978608	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	122559	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	122641	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	452654	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.0	0.0	
chr10	62702551	62702685	reg1005535.p1	6.349	+	TSC_hg19_v1_chr10_+_62538253 BC107750 AK291939	-164347	+	NM_001170406 AK295741 NM_001170407 NM_001786 NM_033379 X05360 Y00272 TSC_hg19_v1_chr10_+_62538235	-164455	+	TSC_hg19_v1_chr10_-_62493282 NM_001204403	-209334	-	BC041791 AB018283 BC032848 TSC_hg19_v1_chr10_-_62704033 NM_001242359 NM_014836 AK307630	1334	-	AK075129 BC093035 TSC_hg19_v1_chr10_-_62761269	58622	-	BC042872 TSC_hg19_v1_chr10_-_63212971 AK125611	510341	-	BC107750|CDK1|983|cyclin-dependent kinase 1##AK291939|CDK1|983|cyclin-dependent kinase 1##NM_001170406|CDK1|983|cyclin-dependent kinase 1##AK295741|CDK1|983|cyclin-dependent kinase 1##NM_001170407|CDK1|983|cyclin-dependent kinase 1##NM_001786|CDK1|983|cyclin-dependent kinase 1##NM_033379|CDK1|983|cyclin-dependent kinase 1##X05360|CDK1|983|cyclin-dependent kinase 1##Y00272|CDK1|983|cyclin-dependent kinase 1##NM_001204403|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##BC041791|RHOBTB1|9886|Rho-related BTB domain containing 1##AB018283|RHOBTB1|9886|Rho-related BTB domain containing 1##BC032848|RHOBTB1|9886|Rho-related BTB domain containing 1##NM_001242359|RHOBTB1|9886|Rho-related BTB domain containing 1##NM_014836|RHOBTB1|9886|Rho-related BTB domain containing 1##AK307630|RHOBTB1|9886|Rho-related BTB domain containing 1##AK075129|RHOBTB1|9886|Rho-related BTB domain containing 1##BC093035|RHOBTB1|9886|Rho-related BTB domain containing 1##BC042872|TMEM26|219623|transmembrane protein 26##AK125611|TMEM26|219623|transmembrane protein 26	0.987323	0.0	denovo_WM_7:7:0.824
chr16	12053013	12053170	reg1006407.p1	6.348	+	NM_001130007	-42573	-	TSC_hg19_v1_chr16_-_12009919 AK315267	-43163	-	TSC_hg19_v1_chr16_-_12009814 X17644 NM_001130006 NM_002094	-43253	-	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	5993	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	17482	+	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	844560	-	NM_001130007|GSPT1|2935|G1 to S phase transition 1##AK315267|GSPT1|2935|G1 to S phase transition 1##X17644|GSPT1|2935|G1 to S phase transition 1##NM_001130006|GSPT1|2935|G1 to S phase transition 1##NM_002094|GSPT1|2935|G1 to S phase transition 1##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1	0.0	0.0	
chr19	16555005	16555099	reg1001066.p2	6.348	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-119283	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-119411	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-246302	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	27724	-	TSC_hg19_v1_chr19_-_16582810 AK291359	27800	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	51918	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.996588	0.0	denovo_WM_7:-61:0.826
chr12	113517194	113517374	reg1007226.p1	6.347	+	NM_004416 BC048216	-21594	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	-100944	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-140944	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	56128	-	AF086713 AB208935 AK294350 NM_001193520 NM_004658	56747	-	AK308987 NM_001144872	70320	+	NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B	1.990793	0.0	denovo_WM_7:43:0.250	denovo_WM_7:44:0.674	denovo_WM_7:59:0.821
chr14	93631272	93631436	reg1004580.p1	6.347	+	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	-49140	-	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	-49763	-	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-241757	+	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	19846	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	19891	-	AK315522 TSC_hg19_v1_chr14_-_93651261	19914	-	BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##AK315522|MOAP1|64112|modulator of apoptosis 1	1.800403	0.0	denovo_WM_7:-68:0.288	denovo_WM_7:-69:0.346	denovo_WM_7:-70:0.236	denovo_WM_7:-83:0.298	denovo_WM_7:-84:0.303	denovo_WM_7:-85:0.268
chr19	57781081	57781261	reg1006557.p1	6.347	+	TSC_hg19_v1_chr19_+_57752051 NM_001023563 NM_001145078	-29114	+	AK297977 TSC_hg19_v1_chr19_+_57751999	-29183	+	AY661554 NM_001015879 NM_003160 AK301886 NM_001015878 AF054621	-38768	+	TSC_hg19_v1_chr19_+_57791351 AK298106	10185	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	10716	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	50743	+	NM_001023563|ZNF805|390980|zinc finger protein 805##NM_001145078|ZNF805|390980|zinc finger protein 805##AK297977|ZNF805|390980|zinc finger protein 805##AY661554|AURKC|6795|aurora kinase C##NM_001015879|AURKC|6795|aurora kinase C##NM_003160|AURKC|6795|aurora kinase C##NM_001015878|AURKC|6795|aurora kinase C##AF054621|AURKC|6795|aurora kinase C##AK298106|ZNF460|10794|zinc finger protein 460##AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543	0.997423	0.0	
chr2	73087030	73087183	reg1006424.p1	6.347	+	TSC_hg19_v1_chr2_-_73053163 AB384543 AB023136 NM_015189	-34002	-	TSC_hg19_v1_chr2_-_72374955 AF252297 AK294814 BC069443 BC109205 FJ467289 NM_019885 CU686818 AK313433	-712164	-	AK295683 TSC_hg19_v1_chr2_-_72371202	-715907	-	TSC_hg19_v1_chr2_+_73114529 NM_003124 AK222942 M76231 BC017310 AK291856 DQ891699 DQ894880	27424	+	BC045762 NM_004097 TSC_hg19_v1_chr2_+_73144689	57547	+	TSC_hg19_v1_chr2_-_73298414 AK024193	211330	-	AB023136|EXOC6B|23233|exocyst complex component 6B##NM_015189|EXOC6B|23233|exocyst complex component 6B##AF252297|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK294814|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC069443|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC109205|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##FJ467289|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_019885|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK313433|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_003124|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK222942|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##M76231|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC017310|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK291856|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ891699|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ894880|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC045762|EMX1|2016|empty spiracles homeobox 1##NM_004097|EMX1|2016|empty spiracles homeobox 1##AK024193|SFXN5|94097|sideroflexin 5	0.994363	0.992954	CTCF.p2:-33:0.993
chr6	155095076	155095181	reg1005242.p2	6.347	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-40303	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-40574	+	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	-40603	+	NM_012454	316294	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	443000	+	BC020838 NM_001001346	490018	+	AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20	0.0	0.0	
chr1	155548008	155548145	reg1004772.p1	6.346	+	TSC_hg19_v1_chr1_+_155533036 BC104640 BC065229 BC009847	-15042	+	TSC_hg19_v1_chr1_-_155532562 AK307595	-15495	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	-15709	-	AK295146 AK290610 NM_018116 BX537684 BC002535 AK001366 AK056128 AK092950 AK297140 AX747823 AK222863 CR749791 AB587518 AK309573 AM393003 CU678024 EU832296 EU832380 AF272833	31954	+	TSC_hg19_v1_chr1_-_155649249 CU674814	101190	-	AK303386 NM_001198899	101532	-	BC104640|LOC645676|645676|uncharacterized LOC645676##BC065229|LOC645676|645676|uncharacterized LOC645676##BC009847|LOC645676|645676|uncharacterized LOC645676##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK295146|MSTO1|55154|misato homolog 1 (Drosophila)##AK290610|MSTO1|55154|misato homolog 1 (Drosophila)##NM_018116|MSTO1|55154|misato homolog 1 (Drosophila)##BX537684|MSTO1|55154|misato homolog 1 (Drosophila)##BC002535|MSTO1|55154|misato homolog 1 (Drosophila)##AK001366|MSTO1|55154|misato homolog 1 (Drosophila)##AK056128|MSTO1|55154|misato homolog 1 (Drosophila)##AK092950|MSTO1|55154|misato homolog 1 (Drosophila)##AK297140|MSTO1|55154|misato homolog 1 (Drosophila)##AK222863|MSTO1|55154|misato homolog 1 (Drosophila)##CR749791|MSTO1|55154|misato homolog 1 (Drosophila)##AK309573|MSTO1|55154|misato homolog 1 (Drosophila)##AM393003|MSTO1|55154|misato homolog 1 (Drosophila)##EU832296|MSTO1|55154|misato homolog 1 (Drosophila)##EU832380|MSTO1|55154|misato homolog 1 (Drosophila)##AF272833|MSTO1|55154|misato homolog 1 (Drosophila)##AK303386|YY1AP1|55249|YY1 associated protein 1##NM_001198899|YY1AP1|55249|YY1 associated protein 1	1.973429	0.0	denovo_WM_7:53:0.457	denovo_WM_7:56:0.411	denovo_WM_7:71:0.572
chr1	222971591	222971762	reg1006803.p1	6.346	+	AK125494 NM_207468	-61119	+	TSC_hg19_v1_chr1_+_222886732 AK315930 AK293974	-84943	+	TSC_hg19_v1_chr1_+_222886714 AK304445	-84988	+	TSC_hg19_v1_chr1_+_222988422 NM_032890	16715	+	TSC_hg19_v1_chr1_-_223316591 NM_003268	344930	-	AK096265 AK000914 BC004888 AK296923 EF560748 AK295553 AY358495 NM_001037175 NM_017982	565795	-	AK125494|FAM177B|400823|family with sequence similarity 177, member B##NM_207468|FAM177B|400823|family with sequence similarity 177, member B##AK315930|BROX|148362|BRO1 domain and CAAX motif containing##AK293974|BROX|148362|BRO1 domain and CAAX motif containing##AK304445|BROX|148362|BRO1 domain and CAAX motif containing##NM_032890|DISP1|84976|dispatched homolog 1 (Drosophila)##NM_003268|TLR5|7100|toll-like receptor 5##AK096265|SUSD4|55061|sushi domain containing 4##AK000914|SUSD4|55061|sushi domain containing 4##BC004888|SUSD4|55061|sushi domain containing 4##AK296923|SUSD4|55061|sushi domain containing 4##EF560748|SUSD4|55061|sushi domain containing 4##AK295553|SUSD4|55061|sushi domain containing 4##AY358495|SUSD4|55061|sushi domain containing 4##NM_001037175|SUSD4|55061|sushi domain containing 4##NM_017982|SUSD4|55061|sushi domain containing 4	1.044389	0.0	denovo_WM_7:-28:0.239	denovo_WM_7:-29:0.239	denovo_WM_7:-30:0.239	denovo_WM_7:-31:0.239
chr17	29117526	29117706	reg1005282.p2	6.346	+	TSC_hg19_v1_chr17_+_29058664 BC047718	-58928	+	BC096718 BC098126 BC098273 NM_015594	-231033	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-313183	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	34059	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	34147	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	41369	+	BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5	1.819159	0.0	denovo_WM_7:11:0.229
chr1	203307655	203307784	reg1007190.p1	6.345	+	TSC_hg19_v1_chr1_+_203274646 NM_006763 U72649 Y09943 BC105948 BC105949 AB463451 EU446924	-33030	+	U62662 BC103695 BC105680 BC105681 BC105682 U29615 TSC_hg19_v1_chr1_-_203198802 AK055165 AK309341 AK225245 AK314331 NM_003465	-108904	-	TSC_hg19_v1_chr1_-_203155913 NM_001276	-151793	-	TSC_hg19_v1_chr1_-_203317366 AB590335 DQ892112 DQ895306 X75546	9665	-	TSC_hg19_v1_chr1_-_203320217 AK291632 AK303866 AK092899 AX747797 BC035281	12490	-	AK172740 TSC_hg19_v1_chr1_-_203320256	12542	-	NM_006763|BTG2|7832|BTG family, member 2##U72649|BTG2|7832|BTG family, member 2##Y09943|BTG2|7832|BTG family, member 2##BC105948|BTG2|7832|BTG family, member 2##BC105949|BTG2|7832|BTG family, member 2##EU446924|BTG2|7832|BTG family, member 2##U62662|CHIT1|1118|chitinase 1 (chitotriosidase)##BC103695|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105680|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105681|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105682|CHIT1|1118|chitinase 1 (chitotriosidase)##U29615|CHIT1|1118|chitinase 1 (chitotriosidase)##AK055165|CHIT1|1118|chitinase 1 (chitotriosidase)##AK309341|CHIT1|1118|chitinase 1 (chitotriosidase)##AK225245|CHIT1|1118|chitinase 1 (chitotriosidase)##AK314331|CHIT1|1118|chitinase 1 (chitotriosidase)##NM_003465|CHIT1|1118|chitinase 1 (chitotriosidase)##NM_001276|CHI3L1|1116|chitinase 3-like 1 (cartilage glycoprotein-39)##DQ892112|FMOD|2331|fibromodulin##DQ895306|FMOD|2331|fibromodulin##X75546|FMOD|2331|fibromodulin##AK291632|FMOD|2331|fibromodulin##AK303866|FMOD|2331|fibromodulin##AK092899|FMOD|2331|fibromodulin##BC035281|FMOD|2331|fibromodulin	0.9989	0.645833	CTCF.p2:16:0.646
chr19	45931276	45931456	reg1005848.p2	6.345	+	TSC_hg19_v1_chr19_-_45927176 NM_001166049 NM_001983	-4191	-	TSC_hg19_v1_chr19_-_45927167 AF433652 AF001925 M13194 M28650	-4209	-	TSC_hg19_v1_chr19_-_45927109 BC008930 AB069681 AK314884	-4256	-	TSC_hg19_v1_chr19_+_45971253 EU178109 EU178110 EU178111 EU178112 EU178113 EU178114 EU178115 EU178116 L49169 NM_001114171 NM_006732 AK097324 AK225070 BC051767 BC036724 BC063042	39903	+	AF004224 TSC_hg19_v1_chr19_-_45996506 NM_206901	65127	-	TSC_hg19_v1_chr19_-_46000271 AF004222 BC014244 BC073874 AK291967 NM_005619 NM_206900	68881	-	NM_001166049|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##NM_001983|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AF433652|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AF001925|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##M13194|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##M28650|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##BC008930|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AB069681|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##AK314884|ERCC1|2067|excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)##EU178109|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178110|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178111|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178112|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178113|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178114|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178115|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##EU178116|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##L49169|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##NM_001114171|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##NM_006732|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##AK225070|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##BC036724|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##BC063042|FOSB|2354|FBJ murine osteosarcoma viral oncogene homolog B##AF004224|RTN2|6253|reticulon 2##NM_206901|RTN2|6253|reticulon 2##AF004222|RTN2|6253|reticulon 2##BC014244|RTN2|6253|reticulon 2##BC073874|RTN2|6253|reticulon 2##AK291967|RTN2|6253|reticulon 2##NM_005619|RTN2|6253|reticulon 2##NM_206900|RTN2|6253|reticulon 2	2.004973	0.0	denovo_WM_7:-13:0.247	denovo_WM_7:-14:0.247	denovo_WM_7:-15:0.226	denovo_WM_7:-16:0.226	denovo_WM_7:-47:0.873
chr2	137067589	137067678	reg1003125.p1	6.345	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-191957	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-193835	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-324417	-	TSC_hg19_v1_chr2_+_137523114 AK299929	455483	+	NM_001080427	680828	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1654301	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	1.993739	0.0	
chr2	24800429	24800556	reg1007036.p1	6.345	+	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	-217012	-	BC050462 NM_001040710	-402521	+	TSC_hg19_v1_chr2_+_24346339 NM_001145710	-454133	+	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	6885	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	215746	-	NM_001199803 AK027859 TSC_hg19_v1_chr2_+_25016332 NM_024322 BC002870 AK315483	215779	+	AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##NM_001145710|LOC375190|375190|UPF0638 protein B##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001199803|CENPO|79172|centromere protein O##AK027859|CENPO|79172|centromere protein O##NM_024322|CENPO|79172|centromere protein O##BC002870|CENPO|79172|centromere protein O##AK315483|CENPO|79172|centromere protein O	0.0	0.0	
chr2	99701996	99702130	reg1005742.p1	6.345	+	BC068277 NM_207362	-149383	-	NM_012214 TSC_hg19_v1_chr2_-_99347596	-354450	-	TSC_hg19_v1_chr2_-_99347557 AK314024	-354567	-	BC028366 NM_182911	55972	-	AK126402 AK314133 BC021264 NM_144706	56002	+	NM_025244	69123	-	BC068277|C2orf55|343990|chromosome 2 open reading frame 55##NM_207362|C2orf55|343990|chromosome 2 open reading frame 55##NM_012214|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK314024|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##BC028366|TSGA10|80705|testis specific, 10##NM_182911|TSGA10|80705|testis specific, 10##AK314133|C2orf15|150590|chromosome 2 open reading frame 15##BC021264|C2orf15|150590|chromosome 2 open reading frame 15##NM_144706|C2orf15|150590|chromosome 2 open reading frame 15##NM_025244|TSGA10|80705|testis specific, 10	1.018227	0.017566	
chr16	17462898	17462992	reg1005283.p1	6.344	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-1136415	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-1136457	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-1136463	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	101860	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1110446	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1335151	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	1.981393	0.0	denovo_WM_7:-26:0.804
chr3	119356927	119357093	reg1006761.p1	6.344	+	NM_001206960 NM_001206961 NM_015900 AK301880 AK222705 AK313519 BC035347 BC047703 U37591 AF035268 AF035269 AB527604 CU690470	-40283	+	BC063883 NM_001125 TSC_hg19_v1_chr3_+_119298606	-58445	+	TSC_hg19_v1_chr3_+_119298355 AK304560 AK291787	-58615	+	CU692240 AF204173 NM_022135 AK314819 BC044929	22342	-	TSC_hg19_v1_chr3_-_119396232 AK312143 BC105280 BC010933 L77701 NM_005694 BC108317	39236	-	TSC_hg19_v1_chr3_+_119421876 AF440403 BC035248 CR749242 NM_033364 AF497717 AK055558 BC126394 AK302699 AK309317 AK294413 AK303997 AK289914 HQ258654	64892	+	NM_001206960|PLA1A|51365|phospholipase A1 member A##NM_001206961|PLA1A|51365|phospholipase A1 member A##NM_015900|PLA1A|51365|phospholipase A1 member A##AK301880|PLA1A|51365|phospholipase A1 member A##AK222705|PLA1A|51365|phospholipase A1 member A##AK313519|PLA1A|51365|phospholipase A1 member A##BC035347|PLA1A|51365|phospholipase A1 member A##BC047703|PLA1A|51365|phospholipase A1 member A##U37591|PLA1A|51365|phospholipase A1 member A##AF035268|PLA1A|51365|phospholipase A1 member A##AF035269|PLA1A|51365|phospholipase A1 member A##BC063883|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001125|ADPRH|141|ADP-ribosylarginine hydrolase##AK304560|ADPRH|141|ADP-ribosylarginine hydrolase##AK291787|ADPRH|141|ADP-ribosylarginine hydrolase##AF204173|POPDC2|64091|popeye domain containing 2##NM_022135|POPDC2|64091|popeye domain containing 2##AK314819|POPDC2|64091|popeye domain containing 2##BC044929|POPDC2|64091|popeye domain containing 2##AK312143|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC105280|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC010933|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##L77701|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_005694|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC108317|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##AF440403|C3orf15|89876|chromosome 3 open reading frame 15##BC035248|C3orf15|89876|chromosome 3 open reading frame 15##CR749242|C3orf15|89876|chromosome 3 open reading frame 15##NM_033364|C3orf15|89876|chromosome 3 open reading frame 15##AF497717|C3orf15|89876|chromosome 3 open reading frame 15##AK055558|C3orf15|89876|chromosome 3 open reading frame 15##BC126394|C3orf15|89876|chromosome 3 open reading frame 15##AK302699|C3orf15|89876|chromosome 3 open reading frame 15##AK309317|C3orf15|89876|chromosome 3 open reading frame 15##AK294413|C3orf15|89876|chromosome 3 open reading frame 15##AK303997|C3orf15|89876|chromosome 3 open reading frame 15##AK289914|C3orf15|89876|chromosome 3 open reading frame 15##HQ258654|C3orf15|89876|chromosome 3 open reading frame 15	0.999653	0.0	denovo_WM_7:-44:0.425	denovo_WM_7:-45:0.425
chr3	71394924	71395099	reg1004925.p1	6.343	+	AK092383 AX747510 NM_001244812	-41101	-	TSC_hg19_v1_chr3_-_71294229 AK074321 NM_001244814	-100739	-	TSC_hg19_v1_chr3_-_71180072 NM_001244815	-214932	-	TSC_hg19_v1_chr3_-_71542628 AF146696 BC054505	147656	-	AF250920 NM_001244816	197696	-	TSC_hg19_v1_chr3_-_71632874 AK122710 NM_001244808 BC005055 BC054815 BC071893 BC080521 BC068481 NM_001012505 NM_001244810 NM_032682	237967	-	AK092383|FOXP1|27086|forkhead box P1##NM_001244812|FOXP1|27086|forkhead box P1##AK074321|FOXP1|27086|forkhead box P1##NM_001244814|FOXP1|27086|forkhead box P1##NM_001244815|FOXP1|27086|forkhead box P1##AF146696|FOXP1|27086|forkhead box P1##BC054505|FOXP1|27086|forkhead box P1##AF250920|FOXP1|27086|forkhead box P1##NM_001244816|FOXP1|27086|forkhead box P1##AK122710|FOXP1|27086|forkhead box P1##NM_001244808|FOXP1|27086|forkhead box P1##BC005055|FOXP1|27086|forkhead box P1##BC054815|FOXP1|27086|forkhead box P1##BC071893|FOXP1|27086|forkhead box P1##BC080521|FOXP1|27086|forkhead box P1##BC068481|FOXP1|27086|forkhead box P1##NM_001012505|FOXP1|27086|forkhead box P1##NM_001244810|FOXP1|27086|forkhead box P1##NM_032682|FOXP1|27086|forkhead box P1	1.922077	0.0	denovo_WM_7:18:0.901	denovo_WM_7:33:0.891
chr1	24863214	24863359	reg1006395.p1	6.342	+	HQ317426 JN203053 NM_001251980 NM_001251982 NM_001251985 EF467309 EF431960 EF529733 AF176116 TSC_hg19_v1_chr1_+_24840858 AY906854 DQ892434 DQ895645 AF176117	-22427	+	HQ317423 HQ317445 HQ317446 NM_001251978	-29203	+	TSC_hg19_v1_chr1_+_24829420 BC035854 NM_001251977 NM_001251981 NM_001251983 NM_013441 HQ287726	-33835	+	TSC_hg19_v1_chr1_+_24882611 NM_001010980 AK124519	19313	+	AF419855 NM_005839 TSC_hg19_v1_chr1_+_24969669	106347	+	TSC_hg19_v1_chr1_+_24969763 BC011019 BC036187	106452	+	HQ317426|RCAN3|11123|RCAN family member 3##JN203053|RCAN3|11123|RCAN family member 3##NM_001251980|RCAN3|11123|RCAN family member 3##NM_001251982|RCAN3|11123|RCAN family member 3##NM_001251985|RCAN3|11123|RCAN family member 3##EF467309|RCAN3|11123|RCAN family member 3##EF431960|RCAN3|11123|RCAN family member 3##EF529733|RCAN3|11123|RCAN family member 3##AF176116|RCAN3|11123|RCAN family member 3##AY906854|RCAN3|11123|RCAN family member 3##DQ892434|RCAN3|11123|RCAN family member 3##DQ895645|RCAN3|11123|RCAN family member 3##AF176117|RCAN3|11123|RCAN family member 3##HQ317423|RCAN3|11123|RCAN family member 3##NM_001251978|RCAN3|11123|RCAN family member 3##BC035854|RCAN3|11123|RCAN family member 3##NM_001251977|RCAN3|11123|RCAN family member 3##NM_001251981|RCAN3|11123|RCAN family member 3##NM_001251983|RCAN3|11123|RCAN family member 3##NM_013441|RCAN3|11123|RCAN family member 3##HQ287726|RCAN3|11123|RCAN family member 3##NM_001010980|C1orf130|400746|chromosome 1 open reading frame 130##AK124519|C1orf130|400746|chromosome 1 open reading frame 130##AF419855|SRRM1|10250|serine/arginine repetitive matrix 1##NM_005839|SRRM1|10250|serine/arginine repetitive matrix 1##BC011019|SRRM1|10250|serine/arginine repetitive matrix 1##BC036187|SRRM1|10250|serine/arginine repetitive matrix 1	0.950788	0.0	denovo_WM_7:23:0.655	denovo_WM_7:24:0.282
chr19	56165064	56165186	reg1006378.p1	6.342	+	AF054984 U79303 AK097095 TSC_hg19_v1_chr19_+_56159577 GU354321 GU354322 GU354323	-5617	+	NM_013301	-6172	+	TSC_hg19_v1_chr19_+_56155014 AF151023 AK026203 NM_016535 BC010097 AK315603 BC001219 BC071845	-10123	+	NM_001012478 NM_007279 TSC_hg19_v1_chr19_+_56165489 AK311672 BC030574	338	+	TSC_hg19_v1_chr19_+_56166394 BC008740	1273	+	TSC_hg19_v1_chr19_+_56166422 X64044 CU679069 AB527505 AB451261 AB451387	1319	+	AF054984|CCDC106|29903|coiled-coil domain containing 106##U79303|CCDC106|29903|coiled-coil domain containing 106##AK097095|CCDC106|29903|coiled-coil domain containing 106##GU354321|CCDC106|29903|coiled-coil domain containing 106##GU354322|CCDC106|29903|coiled-coil domain containing 106##GU354323|CCDC106|29903|coiled-coil domain containing 106##NM_013301|CCDC106|29903|coiled-coil domain containing 106##AF151023|ZNF581|51545|zinc finger protein 581##AK026203|ZNF581|51545|zinc finger protein 581##NM_016535|ZNF581|51545|zinc finger protein 581##BC010097|ZNF581|51545|zinc finger protein 581##AK315603|ZNF581|51545|zinc finger protein 581##BC001219|ZNF581|51545|zinc finger protein 581##BC071845|ZNF581|51545|zinc finger protein 581##NM_001012478|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##NM_007279|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AK311672|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##BC030574|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##BC008740|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##X64044|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AB451261|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2##AB451387|U2AF2|11338|U2 small nuclear RNA auxiliary factor 2	0.998988	1.008342	CTCF.p2:57:0.992	denovo_WM_7:-87:0.239	denovo_WM_7:-88:0.239	denovo_WM_7:-89:0.239	denovo_WM_7:-90:0.239
chr6	119635078	119635176	reg1003824.p1	6.342	+	BX538186 AK091682 AX747126 NM_001100411	-164781	-	TSC_hg19_v1_chr6_-_119399821 BC060769 NM_024581 AK308316	-235219	-	CU687406 AB385245 EU832813 GQ129264 TSC_hg19_v1_chr6_-_119399478	-235703	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	35794	-	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	2020516	-	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	2121698	+	BX538186|FAM184A|79632|family with sequence similarity 184, member A##AK091682|FAM184A|79632|family with sequence similarity 184, member A##NM_001100411|FAM184A|79632|family with sequence similarity 184, member A##BC060769|FAM184A|79632|family with sequence similarity 184, member A##NM_024581|FAM184A|79632|family with sequence similarity 184, member A##AK308316|FAM184A|79632|family with sequence similarity 184, member A##EU832813|FAM184A|79632|family with sequence similarity 184, member A##GQ129264|FAM184A|79632|family with sequence similarity 184, member A##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa	1.041669	0.0	denovo_WM_7:-17:0.457	denovo_WM_7:-18:0.457
chr1	108825287	108825393	reg1006538.p1	6.341	+	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	-38658	-	TSC_hg19_v1_chr1_+_108742987 AK130480	-82331	+	TSC_hg19_v1_chr1_-_108742975 AK304165 NM_013386	-82355	-	NM_001143987 NM_001143988 BC125161 BC125162	167582	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	277702	+	BC088366 TSC_hg19_v1_chr1_-_109203698 NM_001102592 BC012198	378428	-	BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK304165|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_013386|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B##BC088366|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_001102592|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##BC012198|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)	1.013411	0.0	denovo_WM_7:-33:0.951
chr12	56366355	56366488	reg1006210.p2	6.341	+	TSC_hg19_v1_chr12_+_56360579 NM_001798 NM_052827 M68520 AK293246 AK291941 X62071 BC003065	-5832	+	AK092881 AK130180 NM_006928	-5945	-	BT007202 U01874 EU176186 BC001414 M32295 M77348 S73003 TSC_hg19_v1_chr12_-_56359827 AK300150 NM_001200053 NM_001200054	-6602	-	NM_001252036 BC032740 TSC_hg19_v1_chr12_+_56367813 NM_001252037 NM_002868	1341	+	TSC_hg19_v1_chr12_+_56367857 BC040143 BX647808 BX537408	1429	+	TSC_hg19_v1_chr12_+_56367880 BC050558	1458	+	NM_001798|CDK2|1017|cyclin-dependent kinase 2##NM_052827|CDK2|1017|cyclin-dependent kinase 2##M68520|CDK2|1017|cyclin-dependent kinase 2##AK293246|CDK2|1017|cyclin-dependent kinase 2##AK291941|CDK2|1017|cyclin-dependent kinase 2##X62071|CDK2|1017|cyclin-dependent kinase 2##BC003065|CDK2|1017|cyclin-dependent kinase 2##AK092881|PMEL|6490|premelanosome protein##AK130180|PMEL|6490|premelanosome protein##NM_006928|PMEL|6490|premelanosome protein##BT007202|PMEL|6490|premelanosome protein##U01874|PMEL|6490|premelanosome protein##EU176186|PMEL|6490|premelanosome protein##BC001414|PMEL|6490|premelanosome protein##M32295|PMEL|6490|premelanosome protein##M77348|PMEL|6490|premelanosome protein##S73003|PMEL|6490|premelanosome protein##AK300150|PMEL|6490|premelanosome protein##NM_001200053|PMEL|6490|premelanosome protein##NM_001200054|PMEL|6490|premelanosome protein##NM_001252036|RAB5B|5869|RAB5B, member RAS oncogene family##BC032740|RAB5B|5869|RAB5B, member RAS oncogene family##NM_001252037|RAB5B|5869|RAB5B, member RAS oncogene family##NM_002868|RAB5B|5869|RAB5B, member RAS oncogene family##BC040143|RAB5B|5869|RAB5B, member RAS oncogene family##BX647808|RAB5B|5869|RAB5B, member RAS oncogene family##BX537408|RAB5B|5869|RAB5B, member RAS oncogene family##BC050558|RAB5B|5869|RAB5B, member RAS oncogene family	1.291605	0.0	denovo_WM_7:30:0.243	denovo_WM_7:-41:0.314	denovo_WM_7:-42:0.314	denovo_WM_7:-43:0.314
chr2	111903043	111903157	reg1005934.p1	6.341	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-24613	+	AK300513 NM_001142807 BC022268	-412921	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-467278	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	738526	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	738661	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	753085	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.0	0.0	
chr22	29188030	29188210	reg1008396.p1	6.341	+	TSC_hg19_v1_chr22_+_29168732 AK091133 AX746797 AK295140 CR456461 AB528096 CU013012 CU013300 CU691050	-19341	+	TSC_hg19_v1_chr22_+_29168718 BC065549 BC053874 BC040488 AK302925	-19421	+	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	-19476	+	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	8371	-	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	8447	-	TSC_hg19_v1_chr22_+_29196668 AF086143	8563	+	AK091133|CCDC117|150275|coiled-coil domain containing 117##AK295140|CCDC117|150275|coiled-coil domain containing 117##CR456461|CCDC117|150275|coiled-coil domain containing 117##BC065549|CCDC117|150275|coiled-coil domain containing 117##BC053874|CCDC117|150275|coiled-coil domain containing 117##BC040488|CCDC117|150275|coiled-coil domain containing 117##AK302925|CCDC117|150275|coiled-coil domain containing 117##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1	0.999322	0.0	denovo_WM_7:-72:0.720
chr7	140570376	140570556	reg1007010.p2	6.341	+	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	-173963	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-197528	+	AB033103 TSC_hg19_v1_chr7_-_140340614	-229856	-	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	54041	-	AF151897 AK024776 NM_016071	144001	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	144284	-	AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AB033103|DENND2A|27147|DENN/MADD domain containing 2A##AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33	0.979636	0.0	denovo_WM_7:-25:0.473	denovo_WM_7:-26:0.473
chr6	156372156	156372222	reg1019221.p2	6.339	+	AF190122 NM_015718	-595153	-	TSC_hg19_v1_chr6_-_155635619 BC005183 BC017788 NM_016020 AF151833 BC054007 AK289484	-736566	-	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	-736604	-	TSC_hg19_v1_chr6_+_157099052 NM_017519 NM_020732 Y08266	726874	+	TSC_hg19_v1_chr6_+_157099206 AB587572	727036	+	TSC_hg19_v1_chr6_+_157099283 AF521671	727095	+	AF190122|NOX3|50508|NADPH oxidase 3##NM_015718|NOX3|50508|NADPH oxidase 3##BC005183|TFB1M|51106|transcription factor B1, mitochondrial##BC017788|TFB1M|51106|transcription factor B1, mitochondrial##NM_016020|TFB1M|51106|transcription factor B1, mitochondrial##AF151833|TFB1M|51106|transcription factor B1, mitochondrial##BC054007|TFB1M|51106|transcription factor B1, mitochondrial##AK289484|TFB1M|51106|transcription factor B1, mitochondrial##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial##NM_017519|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##NM_020732|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##Y08266|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)	0.0	0.0	
chr7	128789346	128789463	reg1006777.p1	6.339	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-94199	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-94256	-	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	-94509	-	BC009989 NM_005631	39308	+	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	75425	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	218582	+	AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2	0.98769	0.0	denovo_WM_7:-1:0.369	denovo_WM_7:-2:0.364
chrX	44112606	44112764	reg1006758.p2	6.339	+	NM_000266	-279765	-	AK294306 M69177 TSC_hg19_v1_chrX_-_43741666 BC022494 AK310458 AK312679 NM_000898	-371018	-	TSC_hg19_v1_chrX_-_43741500 S62734 CU692654 GQ129432 GQ129433	-371162	-	CU689086 AK292967 AK026496 AK297714 BC031039 NM_025184 AK291187	90263	-	TSC_hg19_v1_chrX_-_44402101 BC035015 BC042813 NM_173794	289469	-	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	590628	+	NM_000266|NDP|4693|Norrie disease (pseudoglioma)##AK294306|MAOB|4129|monoamine oxidase B##M69177|MAOB|4129|monoamine oxidase B##BC022494|MAOB|4129|monoamine oxidase B##AK310458|MAOB|4129|monoamine oxidase B##AK312679|MAOB|4129|monoamine oxidase B##NM_000898|MAOB|4129|monoamine oxidase B##S62734|MAOB|4129|monoamine oxidase B##GQ129432|MAOB|4129|monoamine oxidase B##GQ129433|MAOB|4129|monoamine oxidase B##AK292967|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK026496|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK297714|EFHC2|80258|EF-hand domain (C-terminal) containing 2##BC031039|EFHC2|80258|EF-hand domain (C-terminal) containing 2##NM_025184|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK291187|EFHC2|80258|EF-hand domain (C-terminal) containing 2##BC035015|FUNDC1|139341|FUN14 domain containing 1##BC042813|FUNDC1|139341|FUN14 domain containing 1##NM_173794|FUNDC1|139341|FUN14 domain containing 1##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21	0.0	0.0	
chr12	129273961	129274098	reg1006495.p1	6.338	+	NM_001136103	-522082	+	NM_052907	-3462868	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-3723961	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	34414	-	BC043528 TSC_hg19_v1_chr12_+_129337985	63955	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	64058	+	NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1	0.993912	0.0	denovo_WM_7:-45:0.981
chr12	66150760	66150900	reg1007758.p1	6.338	+	TSC_hg19_v1_chr12_+_65672705 NM_001193461	-478106	+	NM_001031679 NM_001193460 NM_198080 TSC_hg19_v1_chr12_+_65672483 AK316365 AK293084 AK299065 AY358229 BX648776 AL833622 BC040053	-478305	+	TSC_hg19_v1_chr12_+_65563362 AK312473 NM_001167614 NM_014319 AK304317 AF112299	-587476	+	TSC_hg19_v1_chr12_+_66218262 AY601861 AY601862 AY601863 AY601864 AY601865 AY601866 AY601867 NM_003483 NM_003484 U28749 Z31595	67377	+	TSC_hg19_v1_chr12_+_66218605 AK311399	67777	+	TSC_hg19_v1_chr12_+_66218882 JF268496 S80262 GQ272323 AF533652 AF533653 AF533654	68183	+	NM_001193461|MSRB3|253827|methionine sulfoxide reductase B3##NM_001031679|MSRB3|253827|methionine sulfoxide reductase B3##NM_001193460|MSRB3|253827|methionine sulfoxide reductase B3##NM_198080|MSRB3|253827|methionine sulfoxide reductase B3##AK316365|MSRB3|253827|methionine sulfoxide reductase B3##AK293084|MSRB3|253827|methionine sulfoxide reductase B3##AK299065|MSRB3|253827|methionine sulfoxide reductase B3##AY358229|MSRB3|253827|methionine sulfoxide reductase B3##BX648776|MSRB3|253827|methionine sulfoxide reductase B3##AL833622|MSRB3|253827|methionine sulfoxide reductase B3##BC040053|MSRB3|253827|methionine sulfoxide reductase B3##AK312473|LEMD3|23592|LEM domain containing 3##NM_001167614|LEMD3|23592|LEM domain containing 3##NM_014319|LEMD3|23592|LEM domain containing 3##AK304317|LEMD3|23592|LEM domain containing 3##AF112299|LEMD3|23592|LEM domain containing 3##AY601861|HMGA2|8091|high mobility group AT-hook 2##AY601862|HMGA2|8091|high mobility group AT-hook 2##AY601863|HMGA2|8091|high mobility group AT-hook 2##AY601864|HMGA2|8091|high mobility group AT-hook 2##AY601865|HMGA2|8091|high mobility group AT-hook 2##AY601866|HMGA2|8091|high mobility group AT-hook 2##AY601867|HMGA2|8091|high mobility group AT-hook 2##NM_003483|HMGA2|8091|high mobility group AT-hook 2##NM_003484|HMGA2|8091|high mobility group AT-hook 2##U28749|HMGA2|8091|high mobility group AT-hook 2##Z31595|HMGA2|8091|high mobility group AT-hook 2##AK311399|HMGA2|8091|high mobility group AT-hook 2##AF533652|HMGA2|8091|high mobility group AT-hook 2##AF533653|HMGA2|8091|high mobility group AT-hook 2##AF533654|HMGA2|8091|high mobility group AT-hook 2	0.0	0.0	
chr22	45645365	45645528	reg1006475.p1	6.338	+	TSC_hg19_v1_chr22_-_45636776 AK094937	-8672	-	CU012960 CU013248 CR456402 TSC_hg19_v1_chr22_-_45636622 NM_001009880	-8830	-	AK315883 AK297058 TSC_hg19_v1_chr22_-_45609417	-36078	-	TSC_hg19_v1_chr22_+_45680833 AF085808 BC069544 NM_001167574 NM_006953 BC108900 CR456608 AB010637 AB528272 CU013204 CU013492	35414	+	TSC_hg19_v1_chr22_+_45704858 AK125027 NM_001104595	59504	+	TSC_hg19_v1_chr22_+_45705838 NM_017911 AK000642	60368	+	AK094937|KIAA0930|23313|KIAA0930##CU012960|KIAA0930|23313|KIAA0930##CU013248|KIAA0930|23313|KIAA0930##CR456402|KIAA0930|23313|KIAA0930##NM_001009880|KIAA0930|23313|KIAA0930##AK315883|KIAA0930|23313|KIAA0930##AK297058|KIAA0930|23313|KIAA0930##AF085808|UPK3A|7380|uroplakin 3A##BC069544|UPK3A|7380|uroplakin 3A##NM_001167574|UPK3A|7380|uroplakin 3A##NM_006953|UPK3A|7380|uroplakin 3A##BC108900|UPK3A|7380|uroplakin 3A##CR456608|UPK3A|7380|uroplakin 3A##AB010637|UPK3A|7380|uroplakin 3A##CU013204|UPK3A|7380|uroplakin 3A##CU013492|UPK3A|7380|uroplakin 3A##AK125027|FAM118A|55007|family with sequence similarity 118, member A##NM_001104595|FAM118A|55007|family with sequence similarity 118, member A##NM_017911|FAM118A|55007|family with sequence similarity 118, member A##AK000642|FAM118A|55007|family with sequence similarity 118, member A	0.998582	0.0	denovo_WM_7:90:0.494	denovo_WM_7:91:0.494
chr2	68430727	68430891	reg1005989.p1	6.338	+	TSC_hg19_v1_chr2_+_68384999 BC008304 NM_020143 AK291715 AF349314 AF164799 AK313204 AK223118 L48692 AK225641 BC018152	-45712	+	CU680746 EU831464 EU831551 EU832799 GQ129363 TSC_hg19_v1_chr2_-_68384660 BC036904 BC014022 AL834142 BC066657 BC020271 AK056303 NM_138458 AY541587 AK058090	-46175	-	NM_001190263 NM_001190265 NM_006333 NM_173177 TSC_hg19_v1_chr2_-_68290160	-140649	-	TSC_hg19_v1_chr2_-_68479665 AK307136 AK314893 BC027913 NM_000945	48786	-	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	116291	-	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	161563	+	BC008304|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##NM_020143|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK291715|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF349314|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF164799|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK313204|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK223118|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK225641|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##BC018152|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##EU831464|WDR92|116143|WD repeat domain 92##EU831551|WDR92|116143|WD repeat domain 92##EU832799|WDR92|116143|WD repeat domain 92##GQ129363|WDR92|116143|WD repeat domain 92##BC036904|WDR92|116143|WD repeat domain 92##BC014022|WDR92|116143|WD repeat domain 92##AL834142|WDR92|116143|WD repeat domain 92##BC066657|WDR92|116143|WD repeat domain 92##BC020271|WDR92|116143|WD repeat domain 92##AK056303|WDR92|116143|WD repeat domain 92##NM_138458|WDR92|116143|WD repeat domain 92##AY541587|WDR92|116143|WD repeat domain 92##AK058090|WDR92|116143|WD repeat domain 92##NM_001190263|C1D|10438|C1D nuclear receptor corepressor##NM_001190265|C1D|10438|C1D nuclear receptor corepressor##NM_006333|C1D|10438|C1D nuclear receptor corepressor##NM_173177|C1D|10438|C1D nuclear receptor corepressor##AK307136|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##AK314893|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC027913|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_000945|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin	0.980553	0.0	denovo_WM_7:-67:0.486	denovo_WM_7:-69:0.426
chr2	228670309	228670445	reg1005931.p1	6.337	+	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	-87656	-	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	-172459	-	TSC_hg19_v1_chr2_+_228356287 AK295030	-314086	+	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	8214	+	AK097409 NM_178821 BC036377 AK098821 AK301861	65975	+	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	375985	-	AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AK295030|AGFG1|3267|ArfGAP with FG repeats 1##BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing	0.750048	0.0	denovo_WM_7:-27:0.316	denovo_WM_7:-29:0.362
chr1	200835572	200835752	reg1005057.p1	6.336	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-126991	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-196554	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	-196633	-	BC126386 BC126388 AK315339 NM_005298	6461	+	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	24984	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	28335	+	AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106	0.031161	0.0	
chr1	29203775	29203902	reg1007430.p1	6.336	+	NM_000911 U07882	-65185	+	TSC_hg19_v1_chr1_+_29063503 AK303833 NM_001172828 AF432214 AF155095 AF192968 DQ892157 DQ895352 CU678040 AB451335 AB451484	-140301	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	-140555	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	9753	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	9819	+	TSC_hg19_v1_chr1_+_29241080 NM_001166006 BC039079 AK310655	37243	+	NM_000911|OPRD1|4985|opioid receptor, delta 1##U07882|OPRD1|4985|opioid receptor, delta 1##AK303833|YTHDF2|51441|YTH domain family, member 2##NM_001172828|YTHDF2|51441|YTH domain family, member 2##AF432214|YTHDF2|51441|YTH domain family, member 2##AF155095|YTHDF2|51441|YTH domain family, member 2##AF192968|YTHDF2|51441|YTH domain family, member 2##DQ892157|YTHDF2|51441|YTH domain family, member 2##DQ895352|YTHDF2|51441|YTH domain family, member 2##AB451335|YTHDF2|51441|YTH domain family, member 2##AB451484|YTHDF2|51441|YTH domain family, member 2##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166006|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##BC039079|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##AK310655|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.0	0.976701	CTCF.p2:44:0.977
chr14	67218950	67219083	reg1004774.p1	6.336	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-243791	+	TSC_hg19_v1_chr14_+_66974870 AK315569	-244147	+	TSC_hg19_v1_chr14_+_66974859 AK025169	-244163	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	437127	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	489147	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	607550	-	AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	0.040518	0.0	
chr16	74528111	74528270	reg1004624.p1	6.336	+	AK074773 AY358373 AK293982 NM_001011880 AL833339 AF448856	-72850	-	TSC_hg19_v1_chr16_-_74402059 BC037579 AK096768	-126092	-	TSC_hg19_v1_chr16_-_74401811 AK124154	-126378	-	TSC_hg19_v1_chr16_-_74640996 BC040133 U64791 BC031836	112765	-	TSC_hg19_v1_chr16_-_74641004 AK027032 AK304156 U28811 BC060822	112814	-	TSC_hg19_v1_chr16_-_74641016 NM_001145666 NM_001145667 NM_012201	112837	-	AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##AY358373|CLEC18B|497190|C-type lectin domain family 18, member B##AK293982|CLEC18B|497190|C-type lectin domain family 18, member B##NM_001011880|CLEC18B|497190|C-type lectin domain family 18, member B##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##BC037579|LOC283922|283922|pyruvate dehydrogenase phosphatase regulatory subunit pseudogene##AK096768|LOC283922|283922|pyruvate dehydrogenase phosphatase regulatory subunit pseudogene##BC040133|GLG1|2734|golgi glycoprotein 1##U64791|GLG1|2734|golgi glycoprotein 1##BC031836|GLG1|2734|golgi glycoprotein 1##AK027032|GLG1|2734|golgi glycoprotein 1##AK304156|GLG1|2734|golgi glycoprotein 1##U28811|GLG1|2734|golgi glycoprotein 1##BC060822|GLG1|2734|golgi glycoprotein 1##NM_001145666|GLG1|2734|golgi glycoprotein 1##NM_001145667|GLG1|2734|golgi glycoprotein 1##NM_012201|GLG1|2734|golgi glycoprotein 1	0.666334	0.0	denovo_WM_7:-95:0.666
chr3	128448389	128448513	reg1006693.p1	6.336	+	TSC_hg19_v1_chr3_+_128445036 AK298344	-3414	+	TSC_hg19_v1_chr3_+_128445035 AK000826 AK308934 BC008721	-3417	+	TSC_hg19_v1_chr3_+_128445026 AK290721	-3423	+	TSC_hg19_v1_chr3_+_128532268 AF119891	83884	+	NM_014049 TSC_hg19_v1_chr3_+_128598429	149930	+	TSC_hg19_v1_chr3_+_128598453 BC007970	149997	+	AK298344|RAB7A|7879|RAB7A, member RAS oncogene family##AK000826|RAB7A|7879|RAB7A, member RAS oncogene family##AK308934|RAB7A|7879|RAB7A, member RAS oncogene family##BC008721|RAB7A|7879|RAB7A, member RAS oncogene family##AK290721|RAB7A|7879|RAB7A, member RAS oncogene family##NM_014049|ACAD9|28976|acyl-CoA dehydrogenase family, member 9##BC007970|ACAD9|28976|acyl-CoA dehydrogenase family, member 9	0.999297	0.0	
chr6	110116453	110116633	reg1000303.p2	6.336	+	TSC_hg19_v1_chr6_+_110012521 AK222732	-104019	+	TSC_hg19_v1_chr6_+_110012514 AK291671 AK293422 D87464	-104035	+	NM_014845 TSC_hg19_v1_chr6_+_110012488 BC041338	-104087	+	BC126301 BC117298 BC043414 NM_005284 HQ258210 HQ258216 HQ709190 HQ709191	183713	+	TSC_hg19_v1_chr6_-_110500864 BC019019 BC021022 BC044591 AK097838 BC068546	384300	-	TSC_hg19_v1_chr6_-_110501166 NM_001024934 NM_001024935 NM_001024936 NM_003931	384642	-	AK222732|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##AK291671|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##AK293422|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##D87464|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##NM_014845|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##BC041338|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##BC126301|GPR6|2830|G protein-coupled receptor 6##BC117298|GPR6|2830|G protein-coupled receptor 6##BC043414|GPR6|2830|G protein-coupled receptor 6##NM_005284|GPR6|2830|G protein-coupled receptor 6##HQ258210|GPR6|2830|G protein-coupled receptor 6##HQ258216|GPR6|2830|G protein-coupled receptor 6##HQ709190|GPR6|2830|G protein-coupled receptor 6##BC044591|WASF1|8936|WAS protein family, member 1##AK097838|WASF1|8936|WAS protein family, member 1##BC068546|WASF1|8936|WAS protein family, member 1##NM_001024934|WASF1|8936|WAS protein family, member 1##NM_001024935|WASF1|8936|WAS protein family, member 1##NM_001024936|WASF1|8936|WAS protein family, member 1##NM_003931|WASF1|8936|WAS protein family, member 1	0.0	0.0	
chr11	35034414	35034594	reg1004809.p1	6.335	+	TSC_hg19_v1_chr11_+_34938187 BX648910 U82328 BC010389 AK312463 AK301384 AF001437 CU679691 Y13145	-96347	+	CU678963 AB590513 TSC_hg19_v1_chr11_-_34937923 BC017594 BC009077 AK302225 AK225249 AF132963 BC008440 AK292648 NM_015957	-96615	-	NM_001135024 NM_001166158 NM_003477	-96828	+	TSC_hg19_v1_chr11_+_35160385 AL832642 NM_000610 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001202555 NM_001202556 NM_001202557	125896	+	TSC_hg19_v1_chr11_+_35160717 AK297776 D28447 X66733 X55150 BC004372 BC052287 AY101193 BC067348 AY101192 M24915 X56794 U40373 S66400	126230	+	TSC_hg19_v1_chr11_+_35160821 M59040	126314	+	BX648910|PDHX|8050|pyruvate dehydrogenase complex, component X##U82328|PDHX|8050|pyruvate dehydrogenase complex, component X##BC010389|PDHX|8050|pyruvate dehydrogenase complex, component X##AK312463|PDHX|8050|pyruvate dehydrogenase complex, component X##AK301384|PDHX|8050|pyruvate dehydrogenase complex, component X##AF001437|PDHX|8050|pyruvate dehydrogenase complex, component X##Y13145|PDHX|8050|pyruvate dehydrogenase complex, component X##BC017594|APIP|51074|APAF1 interacting protein##BC009077|APIP|51074|APAF1 interacting protein##AK302225|APIP|51074|APAF1 interacting protein##AK225249|APIP|51074|APAF1 interacting protein##AF132963|APIP|51074|APAF1 interacting protein##BC008440|APIP|51074|APAF1 interacting protein##AK292648|APIP|51074|APAF1 interacting protein##NM_015957|APIP|51074|APAF1 interacting protein##NM_001135024|PDHX|8050|pyruvate dehydrogenase complex, component X##NM_001166158|PDHX|8050|pyruvate dehydrogenase complex, component X##NM_003477|PDHX|8050|pyruvate dehydrogenase complex, component X##AL832642|CD44|960|CD44 molecule (Indian blood group)##NM_000610|CD44|960|CD44 molecule (Indian blood group)##NM_001001389|CD44|960|CD44 molecule (Indian blood group)##NM_001001390|CD44|960|CD44 molecule (Indian blood group)##NM_001001391|CD44|960|CD44 molecule (Indian blood group)##NM_001001392|CD44|960|CD44 molecule (Indian blood group)##NM_001202555|CD44|960|CD44 molecule (Indian blood group)##NM_001202556|CD44|960|CD44 molecule (Indian blood group)##NM_001202557|CD44|960|CD44 molecule (Indian blood group)##AK297776|CD44|960|CD44 molecule (Indian blood group)##D28447|CD44|960|CD44 molecule (Indian blood group)##X66733|CD44|960|CD44 molecule (Indian blood group)##X55150|CD44|960|CD44 molecule (Indian blood group)##BC004372|CD44|960|CD44 molecule (Indian blood group)##BC052287|CD44|960|CD44 molecule (Indian blood group)##AY101193|CD44|960|CD44 molecule (Indian blood group)##BC067348|CD44|960|CD44 molecule (Indian blood group)##AY101192|CD44|960|CD44 molecule (Indian blood group)##M24915|CD44|960|CD44 molecule (Indian blood group)##X56794|CD44|960|CD44 molecule (Indian blood group)##U40373|CD44|960|CD44 molecule (Indian blood group)##S66400|CD44|960|CD44 molecule (Indian blood group)##M59040|CD44|960|CD44 molecule (Indian blood group)	1.924002	0.0	denovo_WM_7:18:0.514	denovo_WM_7:19:0.255	denovo_WM_7:33:0.516	denovo_WM_7:34:0.266
chr16	85591271	85591451	reg1003709.p2	6.335	+	BC093665 BC111944 AK126284 NM_198491	-445307	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-529991	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-546232	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	53660	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	55592	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	131181	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.998992	0.0	denovo_WM_7:29:0.462	denovo_WM_7:30:0.518
chr20	37504526	37504662	reg1004574.p2	6.335	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-70240	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-127482	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-151435	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	50395	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	50474	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	86395	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.999414	0.0	
chr2	85233096	85233242	reg1004494.p1	6.335	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	-34678	+	TSC_hg19_v1_chr2_+_85198299 NM_020122	-34885	+	TSC_hg19_v1_chr2_+_85133055 M92381	-100107	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	127490	+	TSC_hg19_v1_chr2_-_85555100 CU678967 EU176441 EU176775 X94333 BC028219	321903	-	AK223063 TSC_hg19_v1_chr2_-_85555113 AK126465 AK222829 BX640733 AK312479 BC008461 AF027515 AF027516 U62390	321961	-	BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##M92381|TMSB10|9168|thymosin beta 10##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##EU176441|TGOLN2|10618|trans-golgi network protein 2##EU176775|TGOLN2|10618|trans-golgi network protein 2##X94333|TGOLN2|10618|trans-golgi network protein 2##BC028219|TGOLN2|10618|trans-golgi network protein 2##AK223063|TGOLN2|10618|trans-golgi network protein 2##AK126465|TGOLN2|10618|trans-golgi network protein 2##AK222829|TGOLN2|10618|trans-golgi network protein 2##BX640733|TGOLN2|10618|trans-golgi network protein 2##AK312479|TGOLN2|10618|trans-golgi network protein 2##BC008461|TGOLN2|10618|trans-golgi network protein 2##AF027515|TGOLN2|10618|trans-golgi network protein 2##AF027516|TGOLN2|10618|trans-golgi network protein 2##U62390|TGOLN2|10618|trans-golgi network protein 2	0.984214	0.0	denovo_WM_7:12:0.984
chr13	37879360	37879487	reg1005055.p1	6.334	+	BC028723 NM_145203	-199623	-	AK292376 TSC_hg19_v1_chr13_-_37633791 AF445026 AF093250 AK225376 AJ130894 BC001145 AK304227 BC030686 NM_001014286 NM_017569	-245710	-	BC020773 TSC_hg19_v1_chr13_+_37574924 AF279901 AB463623 DQ893134 DQ896414	-304494	+	EU262883 EU262884 EU262885 EU262886 AY140646 AY918092 BC106709 BC106710 D13666 GU354210 D13665 TSC_hg19_v1_chr13_-_38172906 NM_001135934 NM_001135935 NM_001135936 NM_006475	293498	-	BC104725 BC105306 BC105641 BC105917 AK312524 AF175406 AF063822 AF063823 AF063824 AF063825 NM_001135955 NM_001135956 NM_001135957 NM_001135958 NM_003306 NM_016179	564475	-	NM_016617 TSC_hg19_v1_chr13_+_38923946	1044528	+	BC028723|CSNK1A1L|122011|casein kinase 1, alpha 1-like##NM_145203|CSNK1A1L|122011|casein kinase 1, alpha 1-like##AK292376|FAM48A|55578|family with sequence similarity 48, member A##AF445026|FAM48A|55578|family with sequence similarity 48, member A##AF093250|FAM48A|55578|family with sequence similarity 48, member A##AK225376|FAM48A|55578|family with sequence similarity 48, member A##AJ130894|FAM48A|55578|family with sequence similarity 48, member A##BC001145|FAM48A|55578|family with sequence similarity 48, member A##AK304227|FAM48A|55578|family with sequence similarity 48, member A##BC030686|FAM48A|55578|family with sequence similarity 48, member A##NM_001014286|FAM48A|55578|family with sequence similarity 48, member A##NM_017569|FAM48A|55578|family with sequence similarity 48, member A##BC020773|EXOSC8|11340|exosome component 8##AF279901|EXOSC8|11340|exosome component 8##DQ893134|EXOSC8|11340|exosome component 8##DQ896414|EXOSC8|11340|exosome component 8##EU262883|POSTN|10631|periostin, osteoblast specific factor##EU262884|POSTN|10631|periostin, osteoblast specific factor##EU262885|POSTN|10631|periostin, osteoblast specific factor##EU262886|POSTN|10631|periostin, osteoblast specific factor##AY140646|POSTN|10631|periostin, osteoblast specific factor##AY918092|POSTN|10631|periostin, osteoblast specific factor##BC106709|POSTN|10631|periostin, osteoblast specific factor##BC106710|POSTN|10631|periostin, osteoblast specific factor##D13666|POSTN|10631|periostin, osteoblast specific factor##GU354210|POSTN|10631|periostin, osteoblast specific factor##D13665|POSTN|10631|periostin, osteoblast specific factor##NM_001135934|POSTN|10631|periostin, osteoblast specific factor##NM_001135935|POSTN|10631|periostin, osteoblast specific factor##NM_001135936|POSTN|10631|periostin, osteoblast specific factor##NM_006475|POSTN|10631|periostin, osteoblast specific factor##BC104725|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105306|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105641|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105917|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AK312524|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF175406|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063822|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063823|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063824|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063825|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135955|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135956|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135957|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135958|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_003306|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_016179|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_016617|UFM1|51569|ubiquitin-fold modifier 1	0.988713	0.042178	denovo_WM_7:-13:0.330	denovo_WM_7:-14:0.330	denovo_WM_7:-15:0.330
chr3	130446007	130446133	reg1005960.p2	6.334	+	AM774225 NM_001102608	-166893	+	EU085556 NM_153264 AM906078	-381652	+	TSC_hg19_v1_chr3_-_129830331 BC071676	-615721	-	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	19533	-	NM_001199180 NM_001199181 NM_001199182 AK296470	123336	+	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	167075	+	AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##EU085556|COL6A5|256076|collagen, type VI, alpha 5##NM_153264|COL6A5|256076|collagen, type VI, alpha 5##AM906078|COL6A5|256076|collagen, type VI, alpha 5##BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	1.088901	0.0	denovo_WM_7:5:0.827
chr2	202660745	202660849	reg1007058.p1	6.333	+	NM_001135745 NM_020919	-14903	-	TSC_hg19_v1_chr2_-_202645657 BC071576 AB053305 AB053306 AF391100 AK023024 BC029174 AK291029	-15132	-	AK090992 TSC_hg19_v1_chr2_-_202645631	-15185	-	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	10495	+	AB017365 NM_003507 AB010881 BC015915 CU677505	238542	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	442471	-	NM_001135745|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##NM_020919|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC071576|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053305|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053306|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AF391100|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK023024|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##BC029174|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AK291029|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)	0.0	0.0	
chr6	64597092	64597272	reg1006188.p1	6.333	+	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-240740	+	TSC_hg19_v1_chr6_+_64346027 BX648268 AK290491	-251165	+	TSC_hg19_v1_chr6_+_64345729 AK315868 AK298580	-251359	+	AY358133 NM_198283 AK310478	1692523	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	1819911	-	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	4001846	-	AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##BX648268|PHF3|23469|PHD finger protein 3##AK290491|PHF3|23469|PHD finger protein 3##AK315868|PHF3|23469|PHD finger protein 3##AK298580|PHF3|23469|PHD finger protein 3##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3	0.991988	0.0	denovo_WM_7:33:0.248	denovo_WM_7:34:0.248	denovo_WM_7:35:0.248	denovo_WM_7:36:0.248
chr9	131479250	131479400	reg1006611.p1	6.333	+	TSC_hg19_v1_chr9_+_131465139 BC032794 BC041581 BC062558 EU831416 EU831509	-14225	+	TSC_hg19_v1_chr9_+_131464821 BC023327 NM_013355	-14482	+	AK300609 NM_001248001	-27072	+	CU690564 BC009280 BC048251 TSC_hg19_v1_chr9_-_131486407 AK027430 AK075332 AK315746 AK092843 AX747760 NM_032799	7064	-	TSC_hg19_v1_chr9_-_131534148 AK314911 BC033884	54692	-	TSC_hg19_v1_chr9_-_131534207 BC052563 NM_006336	54933	-	BC032794|PKN3|29941|protein kinase N3##BC041581|PKN3|29941|protein kinase N3##BC062558|PKN3|29941|protein kinase N3##EU831416|PKN3|29941|protein kinase N3##EU831509|PKN3|29941|protein kinase N3##BC023327|PKN3|29941|protein kinase N3##NM_013355|PKN3|29941|protein kinase N3##AK300609|SET|6418|SET nuclear oncogene##NM_001248001|SET|6418|SET nuclear oncogene##BC009280|ZDHHC12|84885|zinc finger, DHHC-type containing 12##BC048251|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK027430|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK075332|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK315746|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK092843|ZDHHC12|84885|zinc finger, DHHC-type containing 12##NM_032799|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK314911|ZER1|10444|zer-1 homolog (C. elegans)##BC033884|ZER1|10444|zer-1 homolog (C. elegans)##BC052563|ZER1|10444|zer-1 homolog (C. elegans)##NM_006336|ZER1|10444|zer-1 homolog (C. elegans)	1.901315	0.0	denovo_WM_7:74:0.359	denovo_WM_7:75:0.567	denovo_WM_7:90:0.748
chr21	39641261	39641383	reg1002765.p4	6.332	+	D87291 NM_170736 AK292812	-12393	+	BC013327 NM_002243	-12659	+	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	-147921	-	NM_170737	3106	+	AB489170 AM392572 CU691828 EU446470 AK304662 AK303518 BC040168 AK300395 NM_001136155 NM_182918	229043	-	M21535 NM_001243429	315523	-	D87291|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_170736|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AK292812|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##NM_170737|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AM392572|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##EU446470|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK304662|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK303518|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##BC040168|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK300395|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_001136155|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_182918|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##M21535|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_001243429|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)	0.0	0.0	
chr4	171619645	171619791	reg1005818.p1	6.330	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-608304	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-608520	-	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	-672213	-	NM_001034845 BC047551 BC144036 BC144037 BC063015	1114926	+	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	2470234	+	BC043556 TSC_hg19_v1_chr4_-_174090314	2470592	-	BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.0	0.0	
chr4	38134081	38134212	reg1006930.p1	6.330	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-155129	+	AF095288 BC069114 BC069400 NM_006607	-172091	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-241357	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	531680	+	AF289565 TSC_hg19_v1_chr4_-_38666549	532343	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	650453	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.0	0.0	
chr5	175964567	175964724	reg1000911.p2	6.330	+	TSC_hg19_v1_chr5_-_175964314 AB029023 BC039833 BC063297 NM_014901	-318	-	TSC_hg19_v1_chr5_+_175875393 BC006145 BC014001 AB088120 AB020694	-89246	+	TSC_hg19_v1_chr5_+_175875385 AK304346	-89263	+	TSC_hg19_v1_chr5_-_175964932 AK302385	279	-	AK315055 NM_001171976	4866	+	NM_017675	11697	+	AB029023|RNF44|22838|ring finger protein 44##BC039833|RNF44|22838|ring finger protein 44##BC063297|RNF44|22838|ring finger protein 44##NM_014901|RNF44|22838|ring finger protein 44##BC006145|FAF2|23197|Fas associated factor family member 2##BC014001|FAF2|23197|Fas associated factor family member 2##AB088120|FAF2|23197|Fas associated factor family member 2##AB020694|FAF2|23197|Fas associated factor family member 2##AK304346|FAF2|23197|Fas associated factor family member 2##AK302385|RNF44|22838|ring finger protein 44##AK315055|CDHR2|54825|cadherin-related family member 2##NM_001171976|CDHR2|54825|cadherin-related family member 2##NM_017675|CDHR2|54825|cadherin-related family member 2	0.0	0.0	
chr8	102989369	102989549	reg1006005.p1	6.330	+	NM_032041	-186021	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-186259	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-186276	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	147064	-	NM_001040630	147675	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	261714	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	1.008637	0.0	denovo_WM_7:13:0.959
chr11	46141250	46141369	reg1003599.p2	6.329	+	TSC_hg19_v1_chr11_+_45944226 BC037291	-197093	+	AK055829 AK096021 NM_152312	-198126	+	TSC_hg19_v1_chr11_-_45939595 AF118240 NM_004813 NM_057174	-201689	-	TSC_hg19_v1_chr11_-_46142986 AK023258 NM_001101802 NM_016621	1688	-	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	157896	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	158251	+	BC037291|GYLTL1B|120071|glycosyltransferase-like 1B##AK055829|GYLTL1B|120071|glycosyltransferase-like 1B##AK096021|GYLTL1B|120071|glycosyltransferase-like 1B##NM_152312|GYLTL1B|120071|glycosyltransferase-like 1B##AF118240|PEX16|9409|peroxisomal biogenesis factor 16##NM_004813|PEX16|9409|peroxisomal biogenesis factor 16##NM_057174|PEX16|9409|peroxisomal biogenesis factor 16##AK023258|PHF21A|51317|PHD finger protein 21A##NM_001101802|PHF21A|51317|PHD finger protein 21A##NM_016621|PHF21A|51317|PHD finger protein 21A##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1	0.977336	0.0	denovo_WM_7:-5:0.618	denovo_WM_7:-6:0.240
chr13	99978409	99978554	reg1005505.p1	6.329	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-18783	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-67867	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-125362	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	175219	+	TSC_hg19_v1_chr13_+_100153777 BC130293	175301	+	BC041830 TSC_hg19_v1_chr13_+_100229390	250896	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.964021	0.0	denovo_WM_7:-12:0.773
chr16	29743820	29743961	reg1005401.p2	6.329	+	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-53408	+	AK293195 NM_014298 TSC_hg19_v1_chr16_+_29690460	-53496	+	TSC_hg19_v1_chr16_+_29674982 AB464706 DQ892262 DQ895464	-68876	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	13411	-	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	45696	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	58161	+	BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK293195|QPRT|23475|quinolinate phosphoribosyltransferase##NM_014298|QPRT|23475|quinolinate phosphoribosyltransferase##DQ892262|SPN|6693|sialophorin##DQ895464|SPN|6693|sialophorin##BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22	0.9984	0.0	denovo_WM_7:32:0.494	denovo_WM_7:33:0.494
chr19	10547225	10547343	reg1006791.p1	6.329	+	AF073745 NM_001111309	-4174	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	-5857	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	-16054	+	TSC_hg19_v1_chr19_+_10563605 BC038234 NM_006202 BC019864	16384	+	TSC_hg19_v1_chr19_-_10613392 BC002930 AF361886 D50922 NM_012289	66154	-	TSC_hg19_v1_chr19_-_10614033 NM_203500	66630	-	AF073745|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111309|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC038234|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_006202|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC019864|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC002930|KEAP1|9817|kelch-like ECH-associated protein 1##AF361886|KEAP1|9817|kelch-like ECH-associated protein 1##D50922|KEAP1|9817|kelch-like ECH-associated protein 1##NM_012289|KEAP1|9817|kelch-like ECH-associated protein 1##NM_203500|KEAP1|9817|kelch-like ECH-associated protein 1	0.695654	0.020978	denovo_WM_7:-43:0.606
chrX	128688027	128688165	reg1004891.p1	6.329	+	TSC_hg19_v1_chrX_+_128674247 AK226116 BC094726 NM_000276 NM_001587 U57627 AK293107 BC130612 BC144106 BC025253 AB384825	-13798	+	TSC_hg19_v1_chrX_-_128657468 NM_003069 NM_139035	-30634	-	EU636009 TSC_hg19_v1_chrX_-_128657443	-30652	-	BC021104 NM_017413	100826	-	AK300954 U90724 NM_003399 BC126174 BC143901	184880	+	TSC_hg19_v1_chrX_+_128913891 NM_018990 AK296665	225791	+	AK226116|OCRL|4952|oculocerebrorenal syndrome of Lowe##BC094726|OCRL|4952|oculocerebrorenal syndrome of Lowe##NM_000276|OCRL|4952|oculocerebrorenal syndrome of Lowe##NM_001587|OCRL|4952|oculocerebrorenal syndrome of Lowe##U57627|OCRL|4952|oculocerebrorenal syndrome of Lowe##AK293107|OCRL|4952|oculocerebrorenal syndrome of Lowe##BC130612|OCRL|4952|oculocerebrorenal syndrome of Lowe##BC144106|OCRL|4952|oculocerebrorenal syndrome of Lowe##BC025253|OCRL|4952|oculocerebrorenal syndrome of Lowe##NM_003069|SMARCA1|6594|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1##NM_139035|SMARCA1|6594|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1##EU636009|SMARCA1|6594|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1##BC021104|APLN|8862|apelin##NM_017413|APLN|8862|apelin##AK300954|XPNPEP2|7512|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound##U90724|XPNPEP2|7512|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound##NM_003399|XPNPEP2|7512|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound##BC126174|XPNPEP2|7512|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound##BC143901|XPNPEP2|7512|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound##NM_018990|SASH3|54440|SAM and SH3 domain containing 3##AK296665|SASH3|54440|SAM and SH3 domain containing 3	0.996198	0.0	denovo_WM_7:40:0.364	denovo_WM_7:41:0.632
chr1	15898585	15898714	reg1006837.p2	6.328	+	TSC_hg19_v1_chr1_+_15853357 AK091848 AX747219 AB023179 NM_015291 CR749259 CR749567 AL833299 AK292479 BX648982	-45284	+	BC047363 TSC_hg19_v1_chr1_+_15853342	-45324	+	TSC_hg19_v1_chr1_-_15850843 BC006463 AB209147 NM_001229 AK303743 NM_032996	-47619	-	DQ893530 DQ896746 TSC_hg19_v1_chr1_-_15911519 AY057097 AK027037 AK130034 AK225366 BC005090 NM_024758	12891	-	TSC_hg19_v1_chr1_+_15943952 AK293006 NM_032341	45303	+	TSC_hg19_v1_chr1_+_15944018 BC006011	45388	+	AK091848|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AB023179|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##NM_015291|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749259|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749567|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AL833299|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK292479|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BX648982|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BC047363|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BC006463|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AB209147|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##NM_001229|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AK303743|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##NM_032996|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##DQ893530|AGMAT|79814|agmatine ureohydrolase (agmatinase)##DQ896746|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AY057097|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK130034|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK225366|AGMAT|79814|agmatine ureohydrolase (agmatinase)##BC005090|AGMAT|79814|agmatine ureohydrolase (agmatinase)##NM_024758|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK293006|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##NM_032341|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##BC006011|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)	2.319212	0.0	denovo_WM_7:60:0.206	denovo_WM_7:61:0.476	denovo_WM_7:79:0.243
chr1	238223374	238223553	reg1005668.p1	6.328	+	AK314151 NM_021186	-169242	-	NM_001035 X98330 Y08218	-1017690	+	TSC_hg19_v1_chr1_+_236958699 U75743 U71285 BC130616 BC136440 BC144095 BC144097 BC144098	-1264628	+	TSC_hg19_v1_chr1_+_239550016 AK056349	1326479	+	AF279779 NM_000740	1568909	+	TSC_hg19_v1_chr1_+_240255182 NM_020066	2031714	+	AK314151|ZP4|57829|zona pellucida glycoprotein 4##NM_021186|ZP4|57829|zona pellucida glycoprotein 4##NM_001035|RYR2|6262|ryanodine receptor 2 (cardiac)##X98330|RYR2|6262|ryanodine receptor 2 (cardiac)##Y08218|RYR2|6262|ryanodine receptor 2 (cardiac)##U75743|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U71285|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC130616|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC136440|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144095|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144097|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144098|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK056349|CHRM3|1131|cholinergic receptor, muscarinic 3##AF279779|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_000740|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_020066|FMN2|56776|formin 2	0.702591	0.0	denovo_WM_7:-8:0.703
chr10	7527276	7527441	reg1006317.p3	6.327	+	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	-73924	-	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-76108	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-904878	+	AK027849 TSC_hg19_v1_chr10_-_7659249	131859	-	BC004282 NM_032817	134266	-	AK027831 AB075833 TSC_hg19_v1_chr10_-_7682819	155422	-	BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AK027831|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AB075833|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	0.998054	0.0	denovo_WM_7:11:0.438	denovo_WM_7:12:0.254	denovo_WM_7:13:0.250
chr1	67804390	67804545	reg1004560.p2	6.327	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-30904	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-31386	+	AF461422 NM_144701	-172299	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	91556	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	91605	-	TSC_hg19_v1_chr1_-_67896086 AK312256	91618	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.0	0.0	
chr1	78247567	78247725	reg1006673.p1	6.327	+	TSC_hg19_v1_chr1_+_78245342 BX537792 NM_198549 BC130387 BC144167 AK296411 AK092412 AX747532	-2312	+	TSC_hg19_v1_chr1_-_78225538 BC016663 AK308402 AB029020 AF383172 AF383173 AK022864 NM_015017 NM_201624 NM_201626	-22194	-	TSC_hg19_v1_chr1_-_78149099 BC035079 BC035079	-98448	-	NM_001172309 NM_144573 AK298565 AK300728 AK307487 CR936630 BX648546 DQ464902 AF176780 AY211912 TSC_hg19_v1_chr1_+_78354351 BC055084	106666	+	DQ895919 EU176379 U05040 TSC_hg19_v1_chr1_-_78444757 BC010083 BC017247 AK300032 AK301581 AK303568	197080	-	TSC_hg19_v1_chr1_-_78444772 NM_003902	197129	-	BX537792|FAM73A|374986|family with sequence similarity 73, member A##NM_198549|FAM73A|374986|family with sequence similarity 73, member A##BC130387|FAM73A|374986|family with sequence similarity 73, member A##BC144167|FAM73A|374986|family with sequence similarity 73, member A##AK296411|FAM73A|374986|family with sequence similarity 73, member A##AK092412|FAM73A|374986|family with sequence similarity 73, member A##BC016663|USP33|23032|ubiquitin specific peptidase 33##AK308402|USP33|23032|ubiquitin specific peptidase 33##AB029020|USP33|23032|ubiquitin specific peptidase 33##AF383172|USP33|23032|ubiquitin specific peptidase 33##AF383173|USP33|23032|ubiquitin specific peptidase 33##AK022864|USP33|23032|ubiquitin specific peptidase 33##NM_015017|USP33|23032|ubiquitin specific peptidase 33##NM_201624|USP33|23032|ubiquitin specific peptidase 33##NM_201626|USP33|23032|ubiquitin specific peptidase 33##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##NM_001172309|NEXN|91624|nexilin (F actin binding protein)##NM_144573|NEXN|91624|nexilin (F actin binding protein)##AK298565|NEXN|91624|nexilin (F actin binding protein)##AK300728|NEXN|91624|nexilin (F actin binding protein)##AK307487|NEXN|91624|nexilin (F actin binding protein)##CR936630|NEXN|91624|nexilin (F actin binding protein)##BX648546|NEXN|91624|nexilin (F actin binding protein)##DQ464902|NEXN|91624|nexilin (F actin binding protein)##AF176780|NEXN|91624|nexilin (F actin binding protein)##AY211912|NEXN|91624|nexilin (F actin binding protein)##BC055084|NEXN|91624|nexilin (F actin binding protein)##DQ895919|FUBP1|8880|far upstream element (FUSE) binding protein 1##EU176379|FUBP1|8880|far upstream element (FUSE) binding protein 1##U05040|FUBP1|8880|far upstream element (FUSE) binding protein 1##BC010083|FUBP1|8880|far upstream element (FUSE) binding protein 1##BC017247|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK300032|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK301581|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK303568|FUBP1|8880|far upstream element (FUSE) binding protein 1##NM_003902|FUBP1|8880|far upstream element (FUSE) binding protein 1	0.996906	0.0	denovo_WM_7:35:0.896
chr11	22359291	22359396	reg1005862.p1	6.326	+	TSC_hg19_v1_chr11_+_22214577 AB125267 AL832374 AL833271 NM_001142649 NM_213599	-144696	+	AK127805 AK299558 NM_006157 NM_201551 AK313445 AK303736 D83017 BC069674 BC096100 BC096101 BC096102 BC096103 CU686968	-1668151	+	NM_004211 AF085412	-1738396	+	AB032435 NM_020346	323	+	TSC_hg19_v1_chr11_-_22647372 AF181995 AB464520 BC047028 AF181994 AK223277 AK001716 AK023153 BX640996 BC093867 BC101807 BC035346 BC063038 NM_022725	288018	-	TSC_hg19_v1_chr11_+_22688156 NM_001143830 AK313734	328815	+	AB125267|ANO5|203859|anoctamin 5##AL832374|ANO5|203859|anoctamin 5##AL833271|ANO5|203859|anoctamin 5##NM_001142649|ANO5|203859|anoctamin 5##NM_213599|ANO5|203859|anoctamin 5##AK127805|NELL1|4745|NEL-like 1 (chicken)##AK299558|NELL1|4745|NEL-like 1 (chicken)##NM_006157|NELL1|4745|NEL-like 1 (chicken)##NM_201551|NELL1|4745|NEL-like 1 (chicken)##AK313445|NELL1|4745|NEL-like 1 (chicken)##AK303736|NELL1|4745|NEL-like 1 (chicken)##D83017|NELL1|4745|NEL-like 1 (chicken)##BC069674|NELL1|4745|NEL-like 1 (chicken)##BC096100|NELL1|4745|NEL-like 1 (chicken)##BC096101|NELL1|4745|NEL-like 1 (chicken)##BC096102|NELL1|4745|NEL-like 1 (chicken)##BC096103|NELL1|4745|NEL-like 1 (chicken)##NM_004211|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AF085412|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AB032435|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##NM_020346|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##AF181995|FANCF|2188|Fanconi anemia, complementation group F##BC047028|FANCF|2188|Fanconi anemia, complementation group F##AF181994|FANCF|2188|Fanconi anemia, complementation group F##AK223277|FANCF|2188|Fanconi anemia, complementation group F##AK001716|FANCF|2188|Fanconi anemia, complementation group F##AK023153|FANCF|2188|Fanconi anemia, complementation group F##BX640996|FANCF|2188|Fanconi anemia, complementation group F##BC093867|FANCF|2188|Fanconi anemia, complementation group F##BC101807|FANCF|2188|Fanconi anemia, complementation group F##BC063038|FANCF|2188|Fanconi anemia, complementation group F##NM_022725|FANCF|2188|Fanconi anemia, complementation group F##NM_001143830|GAS2|2620|growth arrest-specific 2##AK313734|GAS2|2620|growth arrest-specific 2	0.0	0.0	
chr17	37132189	37132289	reg1007087.p1	6.325	+	BC140879 BC140880 NM_001008777 AY700575	-8600	-	TSC_hg19_v1_chr17_+_37026351 X82456 BC012460 DQ891539 DQ894728 AB463833 CU675705 AK289847	-105843	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	-105925	+	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	175493	-	TSC_hg19_v1_chr17_-_37307863 BC036059	175608	-	TSC_hg19_v1_chr17_-_37307891 NM_020405	175656	-	BC140879|FBXO47|494188|F-box protein 47##BC140880|FBXO47|494188|F-box protein 47##NM_001008777|FBXO47|494188|F-box protein 47##AY700575|FBXO47|494188|F-box protein 47##X82456|LASP1|3927|LIM and SH3 protein 1##BC012460|LASP1|3927|LIM and SH3 protein 1##DQ891539|LASP1|3927|LIM and SH3 protein 1##DQ894728|LASP1|3927|LIM and SH3 protein 1##AK289847|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1##NM_020405|PLXDC1|57125|plexin domain containing 1	0.998855	0.0	denovo_WM_7:25:0.314	denovo_WM_7:26:0.314	denovo_WM_7:27:0.314
chr8	95586242	95586387	reg1003896.p1	6.325	+	AB037850 AF116724 HQ258534 TSC_hg19_v1_chr8_-_95565696 AL832487 BC112288 BC113380 NM_015496 NM_183009	-20607	-	BC001965 AF112481 BC020668 AK290437 TSC_hg19_v1_chr8_-_95487344 NM_001205262 NM_012415	-98995	-	AF007866 NM_001205263	-137159	-	AK057998 TSC_hg19_v1_chr8_-_95651772	65420	-	TSC_hg19_v1_chr8_+_95653284 BX647570	66978	+	TSC_hg19_v1_chr8_+_95653392 NM_001034915 NM_001122825 NM_001122826 NM_001122827 NM_017697	67052	+	AB037850|KIAA1429|25962|KIAA1429##AF116724|KIAA1429|25962|KIAA1429##AL832487|KIAA1429|25962|KIAA1429##BC112288|KIAA1429|25962|KIAA1429##BC113380|KIAA1429|25962|KIAA1429##NM_015496|KIAA1429|25962|KIAA1429##NM_183009|KIAA1429|25962|KIAA1429##BC001965|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AF112481|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##BC020668|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AK290437|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205262|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_012415|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AF007866|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205263|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AK057998|LOC100288748|100288748|uncharacterized LOC100288748##BX647570|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001034915|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001122825|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001122826|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001122827|ESRP1|54845|epithelial splicing regulatory protein 1##NM_017697|ESRP1|54845|epithelial splicing regulatory protein 1	2.724207	0.0	denovo_WM_7:-17:0.687	denovo_WM_7:-32:0.706	denovo_WM_7:-101:0.868
chr14	34009393	34009542	reg1008147.p1	6.324	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-600977	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1210931	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1462961	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	410682	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	922020	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	999418	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	0.0	0.0	
chr18	3594391	3594490	reg1000151.p3	6.324	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-298	+	NM_173211	-140669	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-142809	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	250890	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	279844	-	AK294777 AK294717 NM_001242762 NM_001242763	280287	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.011512	0.810198	CTCF.p2:-15:0.810
chr2	73297504	73297621	reg1007301.p1	6.324	+	BC045762 NM_004097 TSC_hg19_v1_chr2_+_73144689	-152909	+	TSC_hg19_v1_chr2_+_73114529 NM_003124 AK222942 M76231 BC017310 AK291856 DQ891699 DQ894880	-183032	+	TSC_hg19_v1_chr2_-_73053163 AB384543 AB023136 NM_015189	-244458	-	TSC_hg19_v1_chr2_-_73298414 AK024193	874	-	TSC_hg19_v1_chr2_-_73298842 AL833454 AK314770 AK289731 AY044437 BC101311 BC101312 BC101313 NM_144579	1327	-	AK023823 TSC_hg19_v1_chr2_-_73316784	19221	-	BC045762|EMX1|2016|empty spiracles homeobox 1##NM_004097|EMX1|2016|empty spiracles homeobox 1##NM_003124|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK222942|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##M76231|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC017310|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK291856|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ891699|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ894880|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AB023136|EXOC6B|23233|exocyst complex component 6B##NM_015189|EXOC6B|23233|exocyst complex component 6B##AK024193|SFXN5|94097|sideroflexin 5##AL833454|SFXN5|94097|sideroflexin 5##AK314770|SFXN5|94097|sideroflexin 5##AK289731|SFXN5|94097|sideroflexin 5##AY044437|SFXN5|94097|sideroflexin 5##BC101311|SFXN5|94097|sideroflexin 5##BC101312|SFXN5|94097|sideroflexin 5##BC101313|SFXN5|94097|sideroflexin 5##NM_144579|SFXN5|94097|sideroflexin 5##AK023823|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)	0.99022	0.0	denovo_WM_7:3:0.417	denovo_WM_7:6:0.292
chr3	52738471	52738619	reg1006228.p1	6.324	+	BC119670 BC119671 AK027517 NM_152932 AY358579	-929	-	AF191018 NM_014366 NM_206825 NM_206826 TSC_hg19_v1_chr3_+_52720047 AK315484 AK027514 AK297634 AK027516 BC001024 AB463711 CU674504 EU831969 EU832062	-18524	+	TSC_hg19_v1_chr3_-_52719930 AF197569 NM_018313	-18776	-	TSC_hg19_v1_chr3_-_52739602 AF157318 AF175227 AF176777	1032	-	TSC_hg19_v1_chr3_-_52739724 L13435 AK311674 CR749821	1207	-	NM_014041	1311	+	BC119670|GLT8D1|55830|glycosyltransferase 8 domain containing 1##BC119671|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK027517|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_152932|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AY358579|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AF191018|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_014366|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206825|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206826|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK315484|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027514|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027516|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC001024|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU831969|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU832062|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AF197569|PBRM1|55193|polybromo 1##NM_018313|PBRM1|55193|polybromo 1##AF157318|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AF175227|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AF176777|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK311674|GLT8D1|55830|glycosyltransferase 8 domain containing 1##CR749821|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_014041|SPCS1|28972|signal peptidase complex subunit 1 homolog (S. cerevisiae)	1.095795	0.0	
chr6	53213943	53214086	reg1005435.p1	6.324	+	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	-153	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	-293	-	AK125098 TSC_hg19_v1_chr6_-_53213676	-375	-	TSC_hg19_v1_chr6_-_53409483 AB516284 CU691792 CU692650 EU832317 EU832402	195452	-	TSC_hg19_v1_chr6_-_53409528 BC039894 M90656	195503	-	TSC_hg19_v1_chr6_-_53409821 AB262176 BC022487	195799	-	AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB516284|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832317|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832402|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC039894|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##M90656|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AB262176|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC022487|GCLC|2729|glutamate-cysteine ligase, catalytic subunit	0.0	0.0	
chr10	17553769	17553925	reg1005764.p2	6.323	+	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	-57482	-	TSC_hg19_v1_chr10_-_17496178 AB062101 AJ621583 NM_001004470	-57633	-	TSC_hg19_v1_chr10_-_17271978 BC078172	-281861	-	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	105526	-	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	132383	+	NM_001098844 BC157856	240407	+	BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AB062101|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AJ621583|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001004470|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236	0.994295	0.0	denovo_WM_7:1:0.898
chr11	125851745	125851866	reg1006153.p1	6.323	+	NM_013264 BC031098 BC050360 AK312772 TSC_hg19_v1_chr11_+_125774406 AK295121 BC035388	-77463	+	TSC_hg19_v1_chr11_-_125773094 AK055702 BC004822 AK314251 NM_031307	-78694	-	TSC_hg19_v1_chr11_+_125757594 BC015047	-94192	+	BC098583 NM_001243597 NM_016952	81381	-	CU680792 TSC_hg19_v1_chr11_-_126081542 AK027400 AK308059 AK225320 BC014131 NM_001144827 NM_032795	229754	-	NM_024556 TSC_hg19_v1_chr11_+_126081676 AK315615 AK024756 AK225081 BC001647	229857	+	NM_013264|DDX25|29118|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25##BC031098|DDX25|29118|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25##BC050360|DDX25|29118|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25##AK312772|DDX25|29118|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25##AK295121|DDX25|29118|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25##BC035388|DDX25|29118|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25##AK055702|PUS3|83480|pseudouridylate synthase 3##BC004822|PUS3|83480|pseudouridylate synthase 3##AK314251|PUS3|83480|pseudouridylate synthase 3##NM_031307|PUS3|83480|pseudouridylate synthase 3##BC015047|HYLS1|219844|hydrolethalus syndrome 1##BC098583|CDON|50937|Cdon homolog (mouse)##NM_001243597|CDON|50937|Cdon homolog (mouse)##NM_016952|CDON|50937|Cdon homolog (mouse)##AK027400|RPUSD4|84881|RNA pseudouridylate synthase domain containing 4##AK308059|RPUSD4|84881|RNA pseudouridylate synthase domain containing 4##AK225320|RPUSD4|84881|RNA pseudouridylate synthase domain containing 4##BC014131|RPUSD4|84881|RNA pseudouridylate synthase domain containing 4##NM_001144827|RPUSD4|84881|RNA pseudouridylate synthase domain containing 4##NM_032795|RPUSD4|84881|RNA pseudouridylate synthase domain containing 4##NM_024556|FAM118B|79607|family with sequence similarity 118, member B##AK315615|FAM118B|79607|family with sequence similarity 118, member B##AK024756|FAM118B|79607|family with sequence similarity 118, member B##AK225081|FAM118B|79607|family with sequence similarity 118, member B##BC001647|FAM118B|79607|family with sequence similarity 118, member B	1.983862	0.0	denovo_WM_7:66:0.203	denovo_WM_7:67:0.548	denovo_WM_7:82:0.700
chr17	70261380	70261525	reg1004621.p1	6.323	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-144212	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-144282	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-144293	+	AK000477 TSC_hg19_v1_chr17_-_70588944	327491	-	AF331643 TSC_hg19_v1_chr17_-_71088816	827364	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	827371	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	1.021546	0.0	
chr20	15298678	15298813	reg1006286.p2	6.323	+	BC018687 NM_001033087	-121242	+	AB040902 AF169677 TSC_hg19_v1_chr20_-_14318278 BC020870 AK027297 AK074883 NM_013281 NM_198391	-980489	-	TSC_hg19_v1_chr20_+_13976263 BC101216 BC101217 BC101218 BC101219 BC126936 BC128036 EF159161	-1322409	+	TSC_hg19_v1_chr20_-_16553995 AB385485 CU690726 AK307399 AB046810 BC150261 BX647572 AK095322 AY166853 BC050577 NM_001199865 NM_001199866 NM_024704	1255268	-	NM_003092 NM_198220 TSC_hg19_v1_chr20_+_16710679 BC018022 BC036737 AK313004 BC022311 BC008311 M15841	1411918	+	BC101688 BC101690 AF233261 NM_020157 AY359082 AF243505 AJ242552	1430276	+	BC018687|MACROD2|140733|MACRO domain containing 2##NM_001033087|MACROD2|140733|MACRO domain containing 2##AB040902|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AF169677|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC020870|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK027297|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK074883|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_013281|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_198391|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC101216|MACROD2|140733|MACRO domain containing 2##BC101217|MACROD2|140733|MACRO domain containing 2##BC101218|MACROD2|140733|MACRO domain containing 2##BC101219|MACROD2|140733|MACRO domain containing 2##BC126936|MACROD2|140733|MACRO domain containing 2##BC128036|MACROD2|140733|MACRO domain containing 2##EF159161|MACROD2|140733|MACRO domain containing 2##AK307399|KIF16B|55614|kinesin family member 16B##AB046810|KIF16B|55614|kinesin family member 16B##BC150261|KIF16B|55614|kinesin family member 16B##BX647572|KIF16B|55614|kinesin family member 16B##AK095322|KIF16B|55614|kinesin family member 16B##AY166853|KIF16B|55614|kinesin family member 16B##BC050577|KIF16B|55614|kinesin family member 16B##NM_001199865|KIF16B|55614|kinesin family member 16B##NM_001199866|KIF16B|55614|kinesin family member 16B##NM_024704|KIF16B|55614|kinesin family member 16B##NM_003092|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##NM_198220|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC018022|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC036737|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##AK313004|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC022311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC008311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##M15841|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC101688|OTOR|56914|otoraplin##BC101690|OTOR|56914|otoraplin##AF233261|OTOR|56914|otoraplin##NM_020157|OTOR|56914|otoraplin##AY359082|OTOR|56914|otoraplin##AF243505|OTOR|56914|otoraplin##AJ242552|OTOR|56914|otoraplin	0.021144	0.0	
chr8	23081848	23081972	reg1001026.p1	6.323	+	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-60415	-	NM_003841 AK298664 BC017852 TSC_hg19_v1_chr8_+_22960433 AK313213 AK298718 AF012536 AY358281 AF016267 AF033854 AF014794 BC125041 BC125042 AF020502 AF012629 CR541857	-121430	+	TSC_hg19_v1_chr8_-_22926545 AF192548 AF016266 AF016268 AF153687 AK291216 AF012535 AF016849 AY358277 BX538104 AK298602 BC001281 NM_003842 NM_147187	-155316	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	702	-	TSC_hg19_v1_chr8_-_23082664 NM_003844	756	-	AK097202 NM_152272 BC042050	19248	+	AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003841|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AK298664|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##BC017852|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AK313213|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AK298718|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF012536|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AY358281|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF016267|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF033854|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF014794|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##BC125041|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##BC125042|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF020502|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF012629|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##CR541857|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF192548|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF016266|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF016268|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF153687|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AK291216|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF012535|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF016849|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AY358277|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##BX538104|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AK298602|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##BC001281|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##NM_003842|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##NM_147187|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7	0.990582	0.0	
chr17	41150054	41150227	reg1003698.p1	6.322	+	BC014873 TSC_hg19_v1_chr17_+_41132589 AK303115 AL831813 AY189284	-17546	+	AK310125 BC039247 NM_173079 TSC_hg19_v1_chr17_+_41132581	-17559	+	AK295447 NM_001136042 NM_001142653 NM_001142654	-17596	-	TSC_hg19_v1_chr17_+_41150435 AK124148 NM_000988 BC098560 AK311792	291	+	BC002588 TSC_hg19_v1_chr17_+_41150484	340	+	NM_005533 TSC_hg19_v1_chr17_+_41158831 BC001356 AB463796 DQ892598 DQ895826 U72882	8712	+	BC014873|RUNDC1|146923|RUN domain containing 1##AL831813|RUNDC1|146923|RUN domain containing 1##AY189284|RUNDC1|146923|RUN domain containing 1##BC039247|RUNDC1|146923|RUN domain containing 1##NM_173079|RUNDC1|146923|RUN domain containing 1##AK295447|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001136042|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001142653|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001142654|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##AK124148|RPL27|6155|ribosomal protein L27##NM_000988|RPL27|6155|ribosomal protein L27##BC098560|RPL27|6155|ribosomal protein L27##AK311792|RPL27|6155|ribosomal protein L27##BC002588|RPL27|6155|ribosomal protein L27##NM_005533|IFI35|3430|interferon-induced protein 35##BC001356|IFI35|3430|interferon-induced protein 35##DQ892598|IFI35|3430|interferon-induced protein 35##DQ895826|IFI35|3430|interferon-induced protein 35##U72882|IFI35|3430|interferon-induced protein 35	0.058433	0.015514	
chr12	38710482	38710574	reg1000241.p2	6.321	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4535055	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4535142	+	AJ312278 NM_032834	-4535313	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	97	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	588855	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1126471	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.0	0.0	
chr12	56220545	56220698	reg1007855.p1	6.321	+	TSC_hg19_v1_chr12_+_56211873 AK223180	-8751	+	AF395707 NM_014182 TSC_hg19_v1_chr12_+_56211824 AK314046 AF173375 AF161509	-8834	+	TSC_hg19_v1_chr12_-_56211511 NM_033082	-9088	-	AK057354 BC117146 BC117148 TSC_hg19_v1_chr12_-_56223333 BC050271 AY188447 EF560741	2652	-	TSC_hg19_v1_chr12_-_56223400 NM_032364	2796	-	AK095340 TSC_hg19_v1_chr12_+_56223576	2931	+	AK223180|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF395707|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_014182|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK314046|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF173375|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF161509|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_033082|SARNP|84324|SAP domain containing ribonucleoprotein##AK057354|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117146|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117148|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AY188447|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##EF560741|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##NM_032364|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AK095340|TMEM198B|440104|transmembrane protein 198B, pseudogene	0.997101	0.0	denovo_WM_7:-28:0.249	denovo_WM_7:-31:0.498
chr1	45933269	45933377	reg1003322.p2	6.321	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-127423	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-127450	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-127494	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	23510	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	32616	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	54255	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	0.996106	0.0	denovo_WM_7:-6:0.928
chr20	52211615	52211713	reg1001410.p2	6.321	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-865	-	AF041259 NM_006526	-12029	-	AK302570 NM_001193421	-409843	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	475398	-	AK315220 NM_003657	475639	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	578856	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.008367	0.0	
chr2	228371176	228371314	reg1006083.p1	6.321	+	TSC_hg19_v1_chr2_+_228356287 AK295030	-14954	+	TSC_hg19_v1_chr2_+_228336877 NM_001135187 NM_001135188 NM_001135189 NM_004504 BC030592 X89478 BC096272 BC096273 BC096274 BC096275 AB527534 CU688928	-34239	+	TSC_hg19_v1_chr2_+_228336861 AK097451	-34403	+	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	126673	-	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	211476	-	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	307346	+	AK295030|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135187|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135188|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135189|AGFG1|3267|ArfGAP with FG repeats 1##NM_004504|AGFG1|3267|ArfGAP with FG repeats 1##BC030592|AGFG1|3267|ArfGAP with FG repeats 1##X89478|AGFG1|3267|ArfGAP with FG repeats 1##BC096272|AGFG1|3267|ArfGAP with FG repeats 1##BC096273|AGFG1|3267|ArfGAP with FG repeats 1##BC096274|AGFG1|3267|ArfGAP with FG repeats 1##BC096275|AGFG1|3267|ArfGAP with FG repeats 1##AK097451|AGFG1|3267|ArfGAP with FG repeats 1##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3##BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20	0.999887	0.0	
chr22	43773280	43773460	reg1002016.p2	6.321	+	AB528481 AF525689 BC127263 BC047916 TSC_hg19_v1_chr22_-_43739356 AK127719 NM_173050	-34032	-	TSC_hg19_v1_chr22_-_43583141 NM_015140	-190214	-	D63487 AL590888 CT841516 TSC_hg19_v1_chr22_-_43583100 BC001070	-190276	-	TSC_hg19_v1_chr22_+_43808019 AK290541 AK297276 AK299516 AK299531 NM_001044370	34647	+	TSC_hg19_v1_chr22_+_43808109 AK289774	34747	+	BC039315 TSC_hg19_v1_chr22_-_44208121 AK296679 AK292498 AK292411 AK058069 NM_022785 NM_198856	434771	-	AF525689|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##BC127263|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##BC047916|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##AK127719|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##NM_173050|SCUBE1|80274|signal peptide, CUB domain, EGF-like 1##NM_015140|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##D63487|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##AL590888|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##CT841516|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##BC001070|TTLL12|23170|tubulin tyrosine ligase-like family, member 12##AK290541|MPPED1|758|metallophosphoesterase domain containing 1##AK297276|MPPED1|758|metallophosphoesterase domain containing 1##AK299516|MPPED1|758|metallophosphoesterase domain containing 1##AK299531|MPPED1|758|metallophosphoesterase domain containing 1##NM_001044370|MPPED1|758|metallophosphoesterase domain containing 1##AK289774|MPPED1|758|metallophosphoesterase domain containing 1##BC039315|EFCAB6|64800|EF-hand calcium binding domain 6##AK296679|EFCAB6|64800|EF-hand calcium binding domain 6##AK292498|EFCAB6|64800|EF-hand calcium binding domain 6##AK292411|EFCAB6|64800|EF-hand calcium binding domain 6##AK058069|EFCAB6|64800|EF-hand calcium binding domain 6##NM_022785|EFCAB6|64800|EF-hand calcium binding domain 6##NM_198856|EFCAB6|64800|EF-hand calcium binding domain 6	1.979166	0.0	denovo_WM_7:-71:0.948	denovo_WM_7:-86:0.928
chr2	9796392	9796572	reg1004192.p1	6.321	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-25357	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	-25433	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	-25869	-	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	187138	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	295368	+	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	387310	+	NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11	1.058308	0.0	denovo_WM_7:-9:0.690
chr5	90458830	90458971	reg1005201.p1	6.321	+	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-604286	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-633534	-	NM_006467 AK295434 U93868	-688198	+	AK091866 TSC_hg19_v1_chr5_-_90610220	151345	-	TSC_hg19_v1_chr5_+_90676181 BC043415	217262	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	220232	-	AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3	0.90644	0.0	denovo_WM_7:-20:0.788
chr17	16850937	16851069	reg1006995.p1	6.320	+	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-257399	+	AK131401 NM_020787	-293842	-	AF217227 TSC_hg19_v1_chr17_-_16472519 BC041159 BC057791 NM_020653	-378507	-	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	24401	-	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	94961	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	258610	-	EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK131401|ZNF624|57547|zinc finger protein 624##NM_020787|ZNF624|57547|zinc finger protein 624##AF217227|ZNF287|57336|zinc finger protein 287##BC041159|ZNF287|57336|zinc finger protein 287##BC057791|ZNF287|57336|zinc finger protein 287##NM_020653|ZNF287|57336|zinc finger protein 287##AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AK090899|PLD6|201164|phospholipase D family, member 6	0.0	0.0	
chr2	65454831	65455011	reg1000727.p1	6.320	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-185	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-97580	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	-97702	-	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	14	+	TSC_hg19_v1_chr2_-_65593766 AK299079	138852	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	138977	-	AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family##NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2	0.0	0.0	
chr12	50016797	50016953	reg1007949.p1	6.319	+	AM393365 AL136748 BC035621 AK302702 AK093242 AX748009 NM_032130	-17530	-	TSC_hg19_v1_chr12_-_49961916 AK123187 BC011794 NM_006337 BX538079 AK308581	-54957	-	AY336730 NM_001012300	-56654	-	TSC_hg19_v1_chr12_+_50017344 AK123353 BC050398 AL834216 NM_012272	496	+	BC067364 NM_001031698	7451	+	AB384661 TSC_hg19_v1_chr12_-_50101046	84135	-	AM393365|FAM186B|84070|family with sequence similarity 186, member B##AL136748|FAM186B|84070|family with sequence similarity 186, member B##BC035621|FAM186B|84070|family with sequence similarity 186, member B##AK302702|FAM186B|84070|family with sequence similarity 186, member B##AK093242|FAM186B|84070|family with sequence similarity 186, member B##NM_032130|FAM186B|84070|family with sequence similarity 186, member B##BC011794|MCRS1|10445|microspherule protein 1##NM_006337|MCRS1|10445|microspherule protein 1##BX538079|MCRS1|10445|microspherule protein 1##AY336730|MCRS1|10445|microspherule protein 1##NM_001012300|MCRS1|10445|microspherule protein 1##AK123353|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##BC050398|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##AL834216|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##NM_012272|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##BC067364|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##NM_001031698|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)	0.999126	0.0	denovo_WM_7:-28:0.303	denovo_WM_7:-29:0.303	denovo_WM_7:-30:0.303
chr19	39356420	39356558	reg1001237.p4	6.319	+	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	-13513	-	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-15864	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-15913	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	12421	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	33812	+	TSC_hg19_v1_chr19_-_39390229 AK314492 AB009274 AF160214 AY030277 AF095714 AK025876 AK225824 AK054642 AK094810 BC003012 BC003547 AF083107 NM_012237 NM_001193286 NM_030593	33845	-	AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK314492|SIRT2|22933|sirtuin 2##AB009274|SIRT2|22933|sirtuin 2##AF160214|SIRT2|22933|sirtuin 2##AY030277|SIRT2|22933|sirtuin 2##AF095714|SIRT2|22933|sirtuin 2##AK025876|SIRT2|22933|sirtuin 2##AK225824|SIRT2|22933|sirtuin 2##AK054642|SIRT2|22933|sirtuin 2##AK094810|SIRT2|22933|sirtuin 2##BC003012|SIRT2|22933|sirtuin 2##BC003547|SIRT2|22933|sirtuin 2##AF083107|SIRT2|22933|sirtuin 2##NM_012237|SIRT2|22933|sirtuin 2##NM_001193286|SIRT2|22933|sirtuin 2##NM_030593|SIRT2|22933|sirtuin 2	0.991648	0.0	denovo_WM_7:-6:0.228	denovo_WM_7:-7:0.228	denovo_WM_7:-8:0.228	denovo_WM_7:-9:0.228
chrX	52988333	52988460	reg1001604.p2	6.319	+	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	-734	-	AL834135 NM_001099684	-2768	-	AL834135 NM_001099684	-59988	+	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	36250	-	BC009861 NM_018969	90109	+	TSC_hg19_v1_chrX_+_53111548 NM_022117 AK131220 AK292462 AY040871 AF273046 BC024270 AL713652 AB463325 AM392716 AF254794	123246	+	AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##AL834135|FAM156A|29057|family with sequence similarity 156, member A##NM_001099684|FAM156B|727866|family with sequence similarity 156, member B##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A##BC009861|GPR173|54328|G protein-coupled receptor 173##NM_018969|GPR173|54328|G protein-coupled receptor 173##NM_022117|TSPYL2|64061|TSPY-like 2##AK131220|TSPYL2|64061|TSPY-like 2##AK292462|TSPYL2|64061|TSPY-like 2##AY040871|TSPYL2|64061|TSPY-like 2##AF273046|TSPYL2|64061|TSPY-like 2##BC024270|TSPYL2|64061|TSPY-like 2##AL713652|TSPYL2|64061|TSPY-like 2##AM392716|TSPYL2|64061|TSPY-like 2##AF254794|TSPYL2|64061|TSPY-like 2	0.997478	0.0	denovo_WM_7:3:0.758
chr3	178914040	178914153	reg1006430.p1	6.318	+	TSC_hg19_v1_chr3_+_178866144 NM_006218 AK292940	-47858	+	TSC_hg19_v1_chr3_-_178789598 NM_022470 NM_152240	-124470	-	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	-124531	-	AF160968 NM_014407 BC113851	55313	-	NM_171830	55548	-	BC082272 NM_171829	63582	-	NM_006218|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##AK292940|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##NM_022470|ZMAT3|64393|zinc finger, matrin-type 3##NM_152240|ZMAT3|64393|zinc finger, matrin-type 3##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3##AF160968|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_014407|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC113851|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171830|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC082272|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171829|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3	0.0	0.0	
chr3	36953649	36953767	reg1007066.p1	6.318	+	NM_033403	-172357	-	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	-531656	+	BC017805 NM_198399 BC066651 BC036548	-1231249	+	TSC_hg19_v1_chr3_-_36986546 NM_014831	32862	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	80863	-	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	80993	-	NM_033403|DCLK3|85443|doublecortin-like kinase 3##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1	0.993908	0.0	denovo_WM_7:-21:0.981
chr7	8006410	8006506	reg1001919.p2	6.318	+	BC009868 NM_002947	-248221	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-326085	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-326371	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	1975	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	295258	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	295333	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	2.049014	0.0	denovo_WM_7:-74:0.519	denovo_WM_7:-75:0.433
chr22	23130388	23130568	reg1007393.p1	6.316	+	TSC_hg19_v1_chr22_+_23063107 M18645 X53070 BC073786 X57805 X57813 AF026926 L35916 L35917 L35918 L35920 U43769 X64165 X64166 X54442	-67347	+	TSC_hg19_v1_chr22_+_23054863 BC054883 BC070352 BC070353 M97924 BC028090 BC073787 BC073794 X64132 BC007782 X57812 X57821 AY172962 AY190829 X52112	-75596	+	TSC_hg19_v1_chr22_+_23040397 AK129585 BC015833 M87790 BC064491 DQ896079 AF026923 AF026924 AF490949 L03626 AF490945 AF490951 HM996488 HM995992 AY686896 FJ385438 AY530325 AB063990 AB064017 AB064030 AF194613 AF194614 AF194615 AF194616 AF194617 AF194618 AF194619 AF194620 AF194621 AF194622 AF194623 AF194624 AF194625 AF194626 AF194627 AF194628 AF194629 AF194630 AF194631 AF194632 AF194633 AF194634 AF194635 AF194636 AF194637 AF194638 AF194639 AF194640 AF194641 AJ308461 AY942000 AY942037 AY942071 DQ098707 DQ098770 DQ098796 DQ098798 DQ322734 EF589529 EU599339 EU599357 EU599358 FJ385462 U76684 X91805 X99990 AY062362 AY955080 L38436 AJ132425 U09900 Y15770 AF044487 AF029338 AJ132856 AJ233735 AF103601 AF052820 AY062360 AF052819 AF052821 AF052822 AF052825 AF052826 S73510 FJ385555 AF103669 AF103612 AF103629 AF103639 AF103646 AF103689 U86669 AF103720	-89960	+	AK130461 TSC_hg19_v1_chr22_+_23134980 BC030983 AY172960 CU689066 L03628 HM996388 FJ385443 AF336988 AB063978 AF194578 AF194579 AF462664 AM181367 AM183999 AM184016 AM184069 AY043153 AY043162 AY485364 D84140 D84141 DQ098759 DQ109967 DQ490733 DQ840953 DQ841099 FJ385525 L03630 U38662 U76676 X87894 DQ098783 M98325 AF103614 DQ098785 DQ098825 DQ098752 AF490947 FJ385558 S66100	4628	+	TSC_hg19_v1_chr22_+_23154240 L29158 L29159 L29160 L29161 L29164 BC032452 BC089414 AY190827 X57810 L26902	23797	+	X62125 TSC_hg19_v1_chr22_+_23165276 AK129603 BC071804 BC033102 CU689610 L03633 HM996064 HM996172 AF124174 AF194540 AF194541 AF194542 AF194543 AF194544 AF194545 AF194546 AF194547 AF194548 AF194549 AF194550 AF194551 AF194552 AF194553 AF194554 AF194555 AF194556 AF194557 AF194558 AF194559 AF194560 AF194561 AF194562 AF194563 AF194564 AF194565 AF194566 AF194567 AF194568 AF194569 AF194570 AF194571 AF194572 AF194573 AF194574 AF194575 AF194576 AF194577 AJ388658 AJ697911 AM181371 AM183998 AM184000 AM184018 AY685383 AY942038 DQ098709 DQ098711 DQ098766 DQ098772 DQ098775 DQ098778 DQ098782 DQ322816 DQ322984 DQ322992 EF589387 EF589498 EF589544 GU086862 L26532 Y09387 AM184068 DQ098712 DQ098779 AJ399866 AY050712 DQ322899 DQ322900 DQ322979 L21956 S67988 AY950800 U09888 U09892 Y08149 AF103683 AF044486 AY962389 AF092503 AJ408283 DQ098753 Z46858 DQ098738 DQ098739 DQ098762 L38428 DQ098710 AF103704 AF103701 AF103718 AF490954 AF490947 AF103709 AF103640 AF103644 AF103645 AF103647 AF103697 AF103698 AF103700 U87151	34917	+	L35918|IGLJ3|28831|immunoglobulin lambda joining 3##BC070352|IGLV3-21|28796|immunoglobulin lambda variable 3-21##BC007782|IGLC1|3537|immunoglobulin lambda constant 1 (Mcg marker)##X57812|IGLJ3|28831|immunoglobulin lambda joining 3##X57821|IGLJ3|28831|immunoglobulin lambda joining 3##DQ896079|IGL@|3535|immunoglobulin lambda locus	0.038094	0.0	
chr3	28078261	28078378	reg1006998.p1	6.315	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-314118	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-314526	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-552389	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	204779	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	312063	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	312242	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.995636	0.0	denovo_WM_7:24:0.456	denovo_WM_7:25:0.456
chr4	86581740	86581916	reg1000368.p1	6.314	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-185485	+	NM_014991	-694285	-	NM_001263 U65887	-1077735	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	118020	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	118070	+	AK307423 TSC_hg19_v1_chr4_+_86749064	167226	+	NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24	0.0	0.0	
chr7	105701841	105702017	reg1004471.p1	6.314	+	NM_152750 AK126338 AK131293 AK304118 BC111696 BC111738 AK304352	-98231	+	TSC_hg19_v1_chr7_+_105517250 AK125261	-184665	+	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	-184944	-	X61382 CU677735 TSC_hg19_v1_chr7_-_105752712	50752	-	TSC_hg19_v1_chr7_-_105752748 BC020938 BC016835 NM_182715	50815	-	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	51086	-	NM_152750|CDHR3|222256|cadherin-related family member 3##AK126338|CDHR3|222256|cadherin-related family member 3##AK131293|CDHR3|222256|cadherin-related family member 3##AK304118|CDHR3|222256|cadherin-related family member 3##BC111696|CDHR3|222256|cadherin-related family member 3##BC111738|CDHR3|222256|cadherin-related family member 3##AK304352|CDHR3|222256|cadherin-related family member 3##AK125261|CDHR3|222256|cadherin-related family member 3##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##X61382|SYPL1|6856|synaptophysin-like 1##BC020938|SYPL1|6856|synaptophysin-like 1##BC016835|SYPL1|6856|synaptophysin-like 1##NM_182715|SYPL1|6856|synaptophysin-like 1##EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1	1.010056	0.0	denovo_WM_7:14:0.626	denovo_WM_7:15:0.243
chr16	69605040	69605164	reg1006556.p2	6.313	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	-4921	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	-5186	+	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	-5234	+	AF134870 TSC_hg19_v1_chr16_+_69681070	75912	+	U80231 AK000312 TSC_hg19_v1_chr16_+_69726827	121687	+	TSC_hg19_v1_chr16_-_69760362 AK316246	155258	-	AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF134870|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##U80231|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK000312|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK316246|NQO1|1728|NAD(P)H dehydrogenase, quinone 1	1.985798	0.0	denovo_WM_7:-47:0.976	denovo_WM_7:-62:0.979
chr3	59222206	59222386	reg1005732.p1	6.313	+	BC050317 TSC_hg19_v1_chr3_-_59035759	-186536	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-186555	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	-186588	-	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	2014794	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	2324915	+	BC047734 TSC_hg19_v1_chr3_+_61547294	2324990	+	BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	1.286236	0.0	denovo_WM_7:24:0.246	denovo_WM_7:39:0.212
chr7	69243255	69243435	reg1007045.p1	6.313	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-178757	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-179016	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-179509	+	TSC_hg19_v1_chr7_+_70231164 AK296981	987860	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1354443	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2558433	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.997981	0.0	denovo_WM_7:-104:0.840
chr16	21527378	21527534	reg1006015.p1	6.312	+	BC036263 NM_130464	-90799	-	BX648477 NM_001014444 NM_001888	-213069	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-237808	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	4296	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	83434	+	AF151839 TSC_hg19_v1_chr16_+_21611174	83698	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	1.159176	0.0	denovo_WM_7:-2:0.841
chr12	56377373	56377518	reg1005943.p1	6.311	+	AK292597 AK296517 TSC_hg19_v1_chr12_+_56367884 BC065298 BC056422	-9537	+	TSC_hg19_v1_chr12_+_56367880 BC050558	-9566	+	TSC_hg19_v1_chr12_+_56367857 BC040143 BX647808 BX537408	-9595	+	TSC_hg19_v1_chr12_+_56391069 NM_000456 NM_001032386 NM_001032387 AK312763 AK309669	13624	+	NM_022465 AK122880	37314	+	NM_001029 BC002604	58258	+	AK292597|RAB5B|5869|RAB5B, member RAS oncogene family##AK296517|RAB5B|5869|RAB5B, member RAS oncogene family##BC065298|RAB5B|5869|RAB5B, member RAS oncogene family##BC056422|RAB5B|5869|RAB5B, member RAS oncogene family##BC050558|RAB5B|5869|RAB5B, member RAS oncogene family##BC040143|RAB5B|5869|RAB5B, member RAS oncogene family##BX647808|RAB5B|5869|RAB5B, member RAS oncogene family##BX537408|RAB5B|5869|RAB5B, member RAS oncogene family##NM_000456|SUOX|6821|sulfite oxidase##NM_001032386|SUOX|6821|sulfite oxidase##NM_001032387|SUOX|6821|sulfite oxidase##AK312763|SUOX|6821|sulfite oxidase##NM_022465|IKZF4|64375|IKAROS family zinc finger 4 (Eos)##AK122880|IKZF4|64375|IKAROS family zinc finger 4 (Eos)##NM_001029|RPS26|6231|ribosomal protein S26##BC002604|RPS26|6231|ribosomal protein S26	0.998667	0.0	
chr19	18427036	18427206	reg1005513.p1	6.311	+	TSC_hg19_v1_chr19_-_18392451 X56681	-34653	-	TSC_hg19_v1_chr19_-_18392431 BC052571 AK223630 NM_005354	-34697	-	BC169273 TSC_hg19_v1_chr19_-_18392160 X51346	-35016	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	6766	-	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	6845	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	24286	+	X56681|JUND|3727|jun D proto-oncogene##AK223630|JUND|3727|jun D proto-oncogene##NM_005354|JUND|3727|jun D proto-oncogene##BC169273|JUND|3727|jun D proto-oncogene##X51346|JUND|3727|jun D proto-oncogene##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I	0.996888	0.0	
chr4	115307912	115308068	reg1006618.p2	6.311	+	AK307532 TSC_hg19_v1_chr4_-_114900840 AY358647 NM_024590	-407151	-	TSC_hg19_v1_chr4_-_114682923 NM_001221 NM_172114 NM_172115 NM_172127 NM_172128 NM_172129	-625020	-	TSC_hg19_v1_chr4_-_114682619 AK055642 AB209288	-625334	-	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	211593	+	NM_003360 U30930	235532	+	BC113075 BC012326 AK289670 AB036429 NM_022569	726991	-	AK307532|ARSJ|79642|arylsulfatase family, member J##AY358647|ARSJ|79642|arylsulfatase family, member J##NM_024590|ARSJ|79642|arylsulfatase family, member J##NM_001221|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172114|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172115|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172127|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172128|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172129|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK055642|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AB209288|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4	0.15436	0.997519	CTCF.p2:-7:0.998
chr6	34623990	34624168	reg1007026.p1	6.311	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-99983	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-141425	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-190175	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	40467	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	40547	-	NM_003093	100791	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.993717	0.0	
chr1	145396793	145396918	reg1004903.p2	6.308	+	AY894562 AY894570 NM_001039703	-103554	+	TSC_hg19_v1_chr1_+_145209107 NM_203458 BC010154 AK075065 BC090943 BC019835 AK092351 AK098372 AX747492 BC065219 AK293876 BC084572	-187734	+	TSC_hg19_v1_chr1_+_145096519 CU674670 DQ892584 DQ895801	-300323	+	NM_145277 NM_202004 NM_213652 NM_213653 AK223575 AK092682 AK315852 AX747669 BC017926 AK096905 AK290831 AK292742 AK092692 AK124273 AX747673 BC085604	16408	+	TSC_hg19_v1_chr1_+_145438489 NM_006472 AK301203 BX537824 AK226090 S73591 BC093702 BC093704 AB527234 AY594328 BC024305 AK301148	41821	+	TSC_hg19_v1_chr1_-_145470375 AK092209 AK056984 BC004355 NM_032305 BC050418	73533	-	AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894570|NBPF8|728841|neuroblastoma breakpoint family, member 8##NM_001039703|NBPF10|100132406|neuroblastoma breakpoint family, member 10##NM_203458|NOTCH2NL|388677|notch 2 N-terminal like##BC010154|NOTCH2NL|388677|notch 2 N-terminal like##AK075065|NOTCH2NL|388677|notch 2 N-terminal like##BC090943|NOTCH2NL|388677|notch 2 N-terminal like##BC019835|NOTCH2NL|388677|notch 2 N-terminal like##BC065219|NOTCH2NL|388677|notch 2 N-terminal like##BC084572|NOTCH2NL|388677|notch 2 N-terminal like##DQ892584|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##DQ895801|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##NM_145277|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_202004|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213652|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213653|HFE2|148738|hemochromatosis type 2 (juvenile)##AK223575|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092682|HFE2|148738|hemochromatosis type 2 (juvenile)##AK315852|HFE2|148738|hemochromatosis type 2 (juvenile)##BC017926|HFE2|148738|hemochromatosis type 2 (juvenile)##AK096905|HFE2|148738|hemochromatosis type 2 (juvenile)##AK290831|HFE2|148738|hemochromatosis type 2 (juvenile)##AK292742|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092692|HFE2|148738|hemochromatosis type 2 (juvenile)##AK124273|HFE2|148738|hemochromatosis type 2 (juvenile)##BC085604|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_006472|TXNIP|10628|thioredoxin interacting protein##AK301203|TXNIP|10628|thioredoxin interacting protein##BX537824|TXNIP|10628|thioredoxin interacting protein##AK226090|TXNIP|10628|thioredoxin interacting protein##S73591|TXNIP|10628|thioredoxin interacting protein##BC093702|TXNIP|10628|thioredoxin interacting protein##BC093704|TXNIP|10628|thioredoxin interacting protein##AY594328|TXNIP|10628|thioredoxin interacting protein##BC024305|TXNIP|10628|thioredoxin interacting protein##AK301148|TXNIP|10628|thioredoxin interacting protein##AK092209|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK056984|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC004355|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##NM_032305|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC050418|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like	0.996566	0.0	denovo_WM_7:-9:0.928
chr1	157522267	157522419	reg1008012.p1	6.308	+	AF397453 BC101066 BC101067 BC101068 BC101069 AF343662 AF343663 AF343664 AF343665 AK301356 AL834187 AY358085 AK311561 AK300010 AF369794 NM_001195388 NM_031281	-113	-	TSC_hg19_v1_chr1_-_157108169 BC022868 NM_005240 AK304789 AK316274 NM_001145312	-414060	-	TSC_hg19_v1_chr1_-_157108158 L16464	-414193	-	AF329490 AF397452 BC143628 BC125173 BC125174 AF343659 AF343660 AF343661 NM_031282	45458	-	DQ892459 DQ895672 AY043466 AF416901 AF416902 AF416903 AF416904 AF416905 BC028933 BC013698 AK301257 AF459027 NM_052939 AK098122	148184	-	CU686705 AK301113 AY043465 AF459633 AY358130 AK303549 BC069185 NM_030764	224549	-	AF397453|FCRL5|83416|Fc receptor-like 5##BC101066|FCRL5|83416|Fc receptor-like 5##BC101067|FCRL5|83416|Fc receptor-like 5##BC101068|FCRL5|83416|Fc receptor-like 5##BC101069|FCRL5|83416|Fc receptor-like 5##AF343662|FCRL5|83416|Fc receptor-like 5##AF343663|FCRL5|83416|Fc receptor-like 5##AF343664|FCRL5|83416|Fc receptor-like 5##AF343665|FCRL5|83416|Fc receptor-like 5##AK301356|FCRL5|83416|Fc receptor-like 5##AL834187|FCRL5|83416|Fc receptor-like 5##AY358085|FCRL5|83416|Fc receptor-like 5##AK300010|FCRL5|83416|Fc receptor-like 5##AF369794|FCRL5|83416|Fc receptor-like 5##NM_001195388|FCRL5|83416|Fc receptor-like 5##NM_031281|FCRL5|83416|Fc receptor-like 5##BC022868|ETV3|2117|ets variant 3##NM_005240|ETV3|2117|ets variant 3##AK304789|ETV3|2117|ets variant 3##AK316274|ETV3|2117|ets variant 3##NM_001145312|ETV3|2117|ets variant 3##L16464|ETV3|2117|ets variant 3##AF329490|FCRL4|83417|Fc receptor-like 4##AF397452|FCRL4|83417|Fc receptor-like 4##BC143628|FCRL4|83417|Fc receptor-like 4##BC125173|FCRL4|83417|Fc receptor-like 4##BC125174|FCRL4|83417|Fc receptor-like 4##AF343659|FCRL4|83417|Fc receptor-like 4##AF343660|FCRL4|83417|Fc receptor-like 4##AF343661|FCRL4|83417|Fc receptor-like 4##NM_031282|FCRL4|83417|Fc receptor-like 4##DQ892459|FCRL3|115352|Fc receptor-like 3##DQ895672|FCRL3|115352|Fc receptor-like 3##AY043466|FCRL3|115352|Fc receptor-like 3##AF416901|FCRL3|115352|Fc receptor-like 3##AF416902|FCRL3|115352|Fc receptor-like 3##AF416903|FCRL3|115352|Fc receptor-like 3##AF416904|FCRL3|115352|Fc receptor-like 3##AF416905|FCRL3|115352|Fc receptor-like 3##BC028933|FCRL3|115352|Fc receptor-like 3##BC013698|FCRL3|115352|Fc receptor-like 3##AK301257|FCRL3|115352|Fc receptor-like 3##AF459027|FCRL3|115352|Fc receptor-like 3##NM_052939|FCRL3|115352|Fc receptor-like 3##AK098122|FCRL3|115352|Fc receptor-like 3##AK301113|FCRL2|79368|Fc receptor-like 2##AY043465|FCRL2|79368|Fc receptor-like 2##AF459633|FCRL2|79368|Fc receptor-like 2##AY358130|FCRL2|79368|Fc receptor-like 2##AK303549|FCRL2|79368|Fc receptor-like 2##BC069185|FCRL2|79368|Fc receptor-like 2##NM_030764|FCRL2|79368|Fc receptor-like 2	0.967502	0.0	denovo_WM_7:36:0.746
chr12	103763842	103763978	reg1005036.p2	6.308	+	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	-411818	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-412389	+	L47726 NM_000277 U49897	-452530	-	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	125836	-	AY311388 AJ295695 NM_017564 AB052958	217151	+	AB032773 TSC_hg19_v1_chr12_-_104234857	470914	-	DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3	0.0	0.0	
chr13	27722161	27722341	reg1001712.p2	6.308	+	AK312602 AK294378 AK311107 AK307756 AK290220 NM_005288 TSC_hg19_v1_chr13_-_27334929	-387398	-	TSC_hg19_v1_chr13_+_27131892 AF454702	-590349	+	TSC_hg19_v1_chr13_+_27131854 AK289845 BC050283 NM_006646	-590417	+	DQ894074 AF022789 TSC_hg19_v1_chr13_-_27745948 AK289685	23610	-	TSC_hg19_v1_chr13_-_27746003 BC026072 NM_182488	23835	-	TSC_hg19_v1_chr13_+_27825693 D28406 NM_000982 AK130968 AK311795 BC070185 BC070323 BC070330 BC104667 BX647669 AY320407 U25789 BC104478 L25348 U14967 BC070184 BC001603	103491	+	AK312602|GPR12|2835|G protein-coupled receptor 12##AK294378|GPR12|2835|G protein-coupled receptor 12##AK311107|GPR12|2835|G protein-coupled receptor 12##AK307756|GPR12|2835|G protein-coupled receptor 12##AK290220|GPR12|2835|G protein-coupled receptor 12##NM_005288|GPR12|2835|G protein-coupled receptor 12##AF454702|WASF3|10810|WAS protein family, member 3##AK289845|WASF3|10810|WAS protein family, member 3##BC050283|WASF3|10810|WAS protein family, member 3##NM_006646|WASF3|10810|WAS protein family, member 3##DQ894074|USP12|219333|ubiquitin specific peptidase 12##AF022789|USP12|219333|ubiquitin specific peptidase 12##AK289685|USP12|219333|ubiquitin specific peptidase 12##BC026072|USP12|219333|ubiquitin specific peptidase 12##NM_182488|USP12|219333|ubiquitin specific peptidase 12##D28406|RPL21|6144|ribosomal protein L21##NM_000982|RPL21|6144|ribosomal protein L21##AK130968|RPL21|6144|ribosomal protein L21##AK311795|RPL21|6144|ribosomal protein L21##BC070185|RPL21|6144|ribosomal protein L21##BC070323|RPL21|6144|ribosomal protein L21##BC070330|RPL21|6144|ribosomal protein L21##BC104667|RPL21|6144|ribosomal protein L21##BX647669|RPL21|6144|ribosomal protein L21##U25789|RPL21|6144|ribosomal protein L21##BC104478|RPL21|6144|ribosomal protein L21##U14967|RPL21|6144|ribosomal protein L21##BC070184|RPL21|6144|ribosomal protein L21##BC001603|RPL21|6144|ribosomal protein L21	0.919968	0.0	denovo_WM_7:19:0.330	denovo_WM_7:20:0.459
chr15	74746649	74746804	reg1006712.p2	6.308	+	AF071542 AM180445 AM180446 AM180447 AM180448 AM180449 AM180450 AM180451 TSC_hg19_v1_chr15_-_74726300 AF030698 AF069493 BC101643 BC101647 AK293280 AK312257 NM_001146029 NM_003612	-20414	-	NM_001146030 TSC_hg19_v1_chr15_-_74726050	-20697	-	AB528448 DQ891578 DQ894771 CU689338 M14565 BC032329 TSC_hg19_v1_chr15_-_74659988 AK225715 AK292300 AK293204 AK293211 AK300178 AK310362 NM_000781	-86723	-	AY037166 BC033919 BC007913 TSC_hg19_v1_chr15_-_74753464	6721	-	TSC_hg19_v1_chr15_-_74753521 BC030055 NM_032907 NM_201265	6786	-	TSC_hg19_v1_chr15_+_74753647 BC014373 AF085896	6925	+	AF071542|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180445|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180446|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180447|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180448|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180449|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180450|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180451|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF030698|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF069493|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##BC101643|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##BC101647|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AK293280|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AK312257|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_001146029|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_003612|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_001146030|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##DQ891578|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##DQ894771|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##M14565|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##BC032329|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK225715|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK292300|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK293204|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK293211|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK300178|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK310362|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##NM_000781|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AY037166|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##BC033919|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##BC007913|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##BC030055|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##NM_032907|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##NM_201265|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##BC014373|LOC440288|440288|uncharacterized LOC440288##AF085896|LOC440288|440288|uncharacterized LOC440288	0.816283	0.0	denovo_WM_7:24:0.792
chr16	11464708	11464861	reg1007135.p1	6.308	+	TSC_hg19_v1_chr16_+_11439315 BC013040	-25466	+	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	-25490	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-89642	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	215403	-	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	216005	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	297514	+	BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin	0.999494	0.0	
chr3	9821577	9821704	reg1006063.p2	6.308	+	BC106754 BC106755 TSC_hg19_v1_chr3_-_9811662 NM_003656	-9987	-	TSC_hg19_v1_chr3_-_9811623 L41816	-10016	-	TSC_hg19_v1_chr3_-_9811611 AK314917	-10038	-	BC001480 TSC_hg19_v1_chr3_-_9834130 AK000228	12468	-	NM_001024959 NM_001024960 TSC_hg19_v1_chr3_+_9834178	12547	+	TSC_hg19_v1_chr3_+_9834219 NM_001198793 NM_005718 AK024110	12582	+	BC106754|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##BC106755|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##NM_003656|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##L41816|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##AK314917|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##BC001480|TADA3|10474|transcriptional adaptor 3##AK000228|TADA3|10474|transcriptional adaptor 3##NM_001024959|ARPC4|10093|actin related protein 2/3 complex, subunit 4, 20kDa##NM_001024960|ARPC4|10093|actin related protein 2/3 complex, subunit 4, 20kDa##NM_001198793|ARPC4-TTLL3|100526693|ARPC4-TTLL3 readthrough##NM_005718|ARPC4|10093|actin related protein 2/3 complex, subunit 4, 20kDa##AK024110|ARPC4-TTLL3|100526693|ARPC4-TTLL3 readthrough	0.0	0.0	
chr12	95967339	95967519	reg1001162.p1	6.307	+	AL136825 NM_032147	-22185	-	AK027434 TSC_hg19_v1_chr12_-_95942575 BC030704 NM_001042403	-24815	-	NM_006838 AK300836 TSC_hg19_v1_chr12_+_95867927 AK315559 U13261 AK055692 U29607 BC013782 AK091730 AX747149 AB463882 DQ891013 DQ894193	-99532	+	TSC_hg19_v1_chr12_-_96184346 AF297711 AK226070 AK315796	216940	-	BC136798 BC136799 AF278532 NM_021229 AF119916 TSC_hg19_v1_chr12_-_96184542	217097	-	TSC_hg19_v1_chr12_+_96252729 NM_003095 BC002505 X85372 AK311752 BC063397	285304	+	AL136825|USP44|84101|ubiquitin specific peptidase 44##NM_032147|USP44|84101|ubiquitin specific peptidase 44##AK027434|USP44|84101|ubiquitin specific peptidase 44##BC030704|USP44|84101|ubiquitin specific peptidase 44##NM_001042403|USP44|84101|ubiquitin specific peptidase 44##NM_006838|METAP2|10988|methionyl aminopeptidase 2##AK300836|METAP2|10988|methionyl aminopeptidase 2##AK315559|METAP2|10988|methionyl aminopeptidase 2##U13261|METAP2|10988|methionyl aminopeptidase 2##AK055692|METAP2|10988|methionyl aminopeptidase 2##BC013782|METAP2|10988|methionyl aminopeptidase 2##AK091730|METAP2|10988|methionyl aminopeptidase 2##DQ891013|METAP2|10988|methionyl aminopeptidase 2##DQ894193|METAP2|10988|methionyl aminopeptidase 2##AF297711|NTN4|59277|netrin 4##AK226070|NTN4|59277|netrin 4##AK315796|NTN4|59277|netrin 4##BC136798|NTN4|59277|netrin 4##BC136799|NTN4|59277|netrin 4##AF278532|NTN4|59277|netrin 4##NM_021229|NTN4|59277|netrin 4##AF119916|NTN4|59277|netrin 4##NM_003095|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC002505|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##X85372|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##AK311752|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC063397|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F	2.979821	0.0	denovo_WM_7:-65:0.355	denovo_WM_7:-66:0.640	denovo_WM_7:-80:0.237	denovo_WM_7:-81:0.756	denovo_WM_7:-96:0.873
chr21	47078935	47079115	reg1006233.p1	6.307	+	TSC_hg19_v1_chr21_+_47063638 AK310131	-15396	+	TSC_hg19_v1_chr21_-_46962344 U17566 U15939 U19720 BC003068 AK313125 AK307623 NM_001205206 NM_194255	-116693	-	AK303168 NM_001205207	-124491	-	AF176329 NM_001130141 NM_020528 BC012061 AK310672	190863	+	TSC_hg19_v1_chr21_+_47401683 NM_001848 BC052575 AK298968 AK299396 AK307989 BC032821 X15879	322660	+	TSC_hg19_v1_chr21_+_47518062 NM_001849 NM_058174 NM_058175 BC065509	439025	+	AK310131|PCBP3|54039|poly(rC) binding protein 3##U17566|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U15939|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U19720|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##BC003068|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK313125|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK307623|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205206|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_194255|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK303168|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205207|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AF176329|PCBP3|54039|poly(rC) binding protein 3##NM_001130141|PCBP3|54039|poly(rC) binding protein 3##NM_020528|PCBP3|54039|poly(rC) binding protein 3##BC012061|PCBP3|54039|poly(rC) binding protein 3##AK310672|PCBP3|54039|poly(rC) binding protein 3##NM_001848|COL6A1|1291|collagen, type VI, alpha 1##BC052575|COL6A1|1291|collagen, type VI, alpha 1##AK298968|COL6A1|1291|collagen, type VI, alpha 1##AK299396|COL6A1|1291|collagen, type VI, alpha 1##AK307989|COL6A1|1291|collagen, type VI, alpha 1##BC032821|COL6A1|1291|collagen, type VI, alpha 1##X15879|COL6A1|1291|collagen, type VI, alpha 1##NM_001849|COL6A2|1292|collagen, type VI, alpha 2##NM_058174|COL6A2|1292|collagen, type VI, alpha 2##NM_058175|COL6A2|1292|collagen, type VI, alpha 2##BC065509|COL6A2|1292|collagen, type VI, alpha 2	0.750577	0.0	denovo_WM_7:47:0.589
chr8	42645525	42645705	reg1004682.p1	6.307	+	NM_001199279 NM_004198	-21687	-	BC069681 BC069703 BC069788 NM_000749 Y08417 U62438 CU686976 CU686982	-92990	+	TSC_hg19_v1_chr8_-_42397069 BC028600 NM_006749	-248554	-	AL832077 BC021721 AK223231 TSC_hg19_v1_chr8_-_42698469 AK001339 NM_018105 NM_199003	52846	-	BC039461 BC032393 BC013422 AK225086 AL136620 AK225568 AK027748 AK090864 AX746655 BC058289 BC044566 NM_001160223 NM_001160224 NM_001160225 NM_030954	106128	-	TSC_hg19_v1_chr8_+_42752068 BC048304 NM_032410	106437	+	NM_001199279|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##NM_004198|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##BC069681|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069703|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069788|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##NM_000749|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##Y08417|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##U62438|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC028600|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_006749|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##AL832077|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC021721|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK223231|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK001339|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_018105|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_199003|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC039461|RNF170|81790|ring finger protein 170##BC032393|RNF170|81790|ring finger protein 170##BC013422|RNF170|81790|ring finger protein 170##AK225086|RNF170|81790|ring finger protein 170##AL136620|RNF170|81790|ring finger protein 170##AK225568|RNF170|81790|ring finger protein 170##AK027748|RNF170|81790|ring finger protein 170##AK090864|RNF170|81790|ring finger protein 170##BC058289|RNF170|81790|ring finger protein 170##BC044566|RNF170|81790|ring finger protein 170##NM_001160223|RNF170|81790|ring finger protein 170##NM_001160224|RNF170|81790|ring finger protein 170##NM_001160225|RNF170|81790|ring finger protein 170##NM_030954|RNF170|81790|ring finger protein 170##BC048304|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032410|HOOK3|84376|hook homolog 3 (Drosophila)	0.0	0.0	
chr1	29256504	29256684	reg1005641.p2	6.306	+	TSC_hg19_v1_chr1_+_29241080 NM_001166006 BC039079 AK310655	-15513	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	-42937	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	-43003	+	TSC_hg19_v1_chr1_-_29309157 D28453	52531	-	BC110336 NM_001171868	192418	-	BC064375 BC082989 NM_001003682	193819	-	NM_001166006|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##BC039079|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##AK310655|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##BC110336|TMEM200B|399474|transmembrane protein 200B##NM_001171868|TMEM200B|399474|transmembrane protein 200B##BC064375|TMEM200B|399474|transmembrane protein 200B##BC082989|TMEM200B|399474|transmembrane protein 200B##NM_001003682|TMEM200B|399474|transmembrane protein 200B	0.999028	0.0	
chr19	2163504	2163651	reg1006351.p1	6.306	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-12024	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-12035	-	CU679595 AB384738 BC005142 TSC_hg19_v1_chr19_-_2151519	-12152	-	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	561	+	BC021037 TSC_hg19_v1_chr19_+_2222534	58897	+	BC032803 TSC_hg19_v1_chr19_+_2232168	68544	+	NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC005142|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	0.990302	0.0	denovo_WM_7:-78:0.835
chr2	47563912	47564048	reg1008040.p1	6.305	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-160271	-	TSC_hg19_v1_chr2_-_47403656 BC008437	-160326	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	-160330	-	NM_002354 TSC_hg19_v1_chr2_+_47596376	32362	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	32565	+	TSC_hg19_v1_chr2_+_47630218 AK304496	66224	+	NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	0.0	0.0	
chr6	150282916	150283066	reg1006049.p1	6.305	+	AK299895 AB052906 NM_025217 TSC_hg19_v1_chr6_+_150263162 AX772820 BC034689 AY358665 AF304378 AY026825 CU689938	-19827	+	AY172580 BC096719 BC098152 AY172579 NM_001001788 AK310157	-38791	-	AY359075 NM_001243328	-65797	-	AK292519 AK316582 TSC_hg19_v1_chr6_+_150285142 BC035416 NM_025218 AB052907 AF304377 AF346416 AF425265 AF346595	2171	+	BC131600 AB528849 AY039682 NM_130900	63642	-	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	107222	-	AK299895|ULBP2|80328|UL16 binding protein 2##AB052906|ULBP2|80328|UL16 binding protein 2##NM_025217|ULBP2|80328|UL16 binding protein 2##AX772820|ULBP2|80328|UL16 binding protein 2##BC034689|ULBP2|80328|UL16 binding protein 2##AY358665|ULBP2|80328|UL16 binding protein 2##AF304378|ULBP2|80328|UL16 binding protein 2##AY026825|ULBP2|80328|UL16 binding protein 2##AY172580|RAET1G|353091|retinoic acid early transcript 1G##BC096719|RAET1G|353091|retinoic acid early transcript 1G##BC098152|RAET1G|353091|retinoic acid early transcript 1G##AY172579|RAET1G|353091|retinoic acid early transcript 1G##NM_001001788|RAET1G|353091|retinoic acid early transcript 1G##AK310157|RAET1G|353091|retinoic acid early transcript 1G##AY359075|RAET1E|135250|retinoic acid early transcript 1E##NM_001243328|RAET1E|135250|retinoic acid early transcript 1E##AK292519|ULBP1|80329|UL16 binding protein 1##AK316582|ULBP1|80329|UL16 binding protein 1##BC035416|ULBP1|80329|UL16 binding protein 1##NM_025218|ULBP1|80329|UL16 binding protein 1##AB052907|ULBP1|80329|UL16 binding protein 1##AF304377|ULBP1|80329|UL16 binding protein 1##AF346416|ULBP1|80329|UL16 binding protein 1##AF425265|ULBP1|80329|UL16 binding protein 1##AF346595|ULBP1|80329|UL16 binding protein 1##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3	0.998959	0.076982	denovo_WM_7:-48:0.722
chr6	158245037	158245202	reg1007449.p1	6.305	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	-745	+	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	-830	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-442580	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	157768	+	TSC_hg19_v1_chr6_+_158402923 AF318616	157800	+	TSC_hg19_v1_chr6_+_158402928 AY152396 AB384465	157890	+	AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2##AF318616|SYNJ2|8871|synaptojanin 2##AY152396|SYNJ2|8871|synaptojanin 2	0.837751	0.0	denovo_WM_7:-70:0.497
chr9	42817055	42817198	reg1007712.p1	6.305	+	NM_001099279 NM_199244	-99893	+	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	-448768	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-862212	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	316361	-	NM_001145196	813603	-	TSC_hg19_v1_chr9_+_43684876 NM_001201380	867717	+	NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B	0.996044	0.0	denovo_WM_7:-5:0.315	denovo_WM_7:-6:0.315	denovo_WM_7:-7:0.315
chrX	46615227	46615338	reg1007229.p1	6.305	+	NM_019886 BC045537 BC023971 AB040711 AB037187 GQ129386 GQ129387	-182004	+	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	-210338	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	-210426	-	AF298591 NM_032591 TSC_hg19_v1_chrX_-_46618577	3247	-	TSC_hg19_v1_chrX_-_46618608 BC094742	3348	-	NM_006915 AJ007590 TSC_hg19_v1_chrX_+_46696391 BC027851	81095	+	NM_019886|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC045537|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC023971|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB040711|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB037187|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129386|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129387|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##AF298591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_032591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##BC094742|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_006915|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AJ007590|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC027851|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)	0.999524	0.0	denovo_WM_7:-12:0.235	denovo_WM_7:-13:0.235	denovo_WM_7:-14:0.235	denovo_WM_7:-15:0.235
chr6	5261606	5261761	reg1000692.p2	6.303	+	TSC_hg19_v1_chr6_+_5261294 AK312454	-421	+	TSC_hg19_v1_chr6_-_5261177 NM_001164840 NM_001164841 NM_020408	-517	-	AF088060 EU831799 EU831876 TSC_hg19_v1_chr6_-_5260976 AK309661 AK291158 BC067762 AF170070 AF285118 BC009552	-686	-	TSC_hg19_v1_chr6_+_5261758 NM_006567 AK223423 BC020239 BC021112 BC014273	7	+	AJ420483 TSC_hg19_v1_chr6_-_6007133 BC002683 AF136631 AF114833 AK314095	745458	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	746014	-	AK312454|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##NM_001164840|LYRM4|57128|LYR motif containing 4##NM_001164841|LYRM4|57128|LYR motif containing 4##NM_020408|LYRM4|57128|LYR motif containing 4##AF088060|LYRM4|57128|LYR motif containing 4##EU831799|LYRM4|57128|LYR motif containing 4##EU831876|LYRM4|57128|LYR motif containing 4##AK309661|LYRM4|57128|LYR motif containing 4##AK291158|LYRM4|57128|LYR motif containing 4##BC067762|LYRM4|57128|LYR motif containing 4##AF170070|LYRM4|57128|LYR motif containing 4##AF285118|LYRM4|57128|LYR motif containing 4##BC009552|LYRM4|57128|LYR motif containing 4##NM_006567|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK223423|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC020239|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC021112|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AJ420483|NRN1|51299|neuritin 1##BC002683|NRN1|51299|neuritin 1##AF136631|NRN1|51299|neuritin 1##AF114833|NRN1|51299|neuritin 1##AK314095|NRN1|51299|neuritin 1##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1	0.0	0.0	
chr7	128858495	128858629	reg1004730.p1	6.303	+	BC009989 NM_005631	-29850	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-163357	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-163414	-	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	6267	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	149424	+	TSC_hg19_v1_chr7_+_129008062 AK025372	149526	+	BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2##AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2	0.0	0.996658	CTCF.p2:8:0.997
chr1	68626719	68626855	reg1006310.p1	6.302	+	BC005362 U96750 NM_004675	-110402	-	TSC_hg19_v1_chr1_-_68299145 AF365871 AK293101 AK223000 AL832431 AF119663 AF123766 BC005940 NM_018841	-327677	-	AK124028 TSC_hg19_v1_chr1_+_68297985 AK096081	-328799	+	TSC_hg19_v1_chr1_-_68698207 BC137109 BC137113 BC110826 AB097018 AK074984 AK301613 BX648748 BX538320 NM_001002292 NM_001193334 AK074583 AK309779 DQ323735 AY359035 NM_024911	71370	-	AK289925 BC075035 BC075036 NM_000329 U18991	288849	-	CU688044 BC065304 BC011743 BC035506 BC041580 TSC_hg19_v1_chr1_-_68962723	335914	-	BC005362|DIRAS3|9077|DIRAS family, GTP-binding RAS-like 3##U96750|DIRAS3|9077|DIRAS family, GTP-binding RAS-like 3##NM_004675|DIRAS3|9077|DIRAS family, GTP-binding RAS-like 3##AF365871|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AK293101|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AK223000|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AL832431|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AF119663|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AF123766|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##BC005940|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##NM_018841|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AK124028|LOC100289178|100289178|uncharacterized LOC100289178##BC137109|WLS|79971|wntless homolog (Drosophila)##BC137113|WLS|79971|wntless homolog (Drosophila)##BC110826|WLS|79971|wntless homolog (Drosophila)##AB097018|WLS|79971|wntless homolog (Drosophila)##AK074984|WLS|79971|wntless homolog (Drosophila)##AK301613|WLS|79971|wntless homolog (Drosophila)##BX648748|WLS|79971|wntless homolog (Drosophila)##BX538320|WLS|79971|wntless homolog (Drosophila)##NM_001002292|WLS|79971|wntless homolog (Drosophila)##NM_001193334|WLS|79971|wntless homolog (Drosophila)##AK074583|WLS|79971|wntless homolog (Drosophila)##AK309779|WLS|79971|wntless homolog (Drosophila)##DQ323735|WLS|79971|wntless homolog (Drosophila)##AY359035|WLS|79971|wntless homolog (Drosophila)##NM_024911|WLS|79971|wntless homolog (Drosophila)##AK289925|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##BC075035|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##BC075036|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##NM_000329|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##U18991|RPE65|6121|retinal pigment epithelium-specific protein 65kDa##BC065304|DEPDC1|55635|DEP domain containing 1##BC011743|DEPDC1|55635|DEP domain containing 1##BC035506|DEPDC1|55635|DEP domain containing 1##BC041580|DEPDC1|55635|DEP domain containing 1	0.0	0.0	
chr8	68646038	68646174	reg1007611.p1	6.302	+	BC030256 TSC_hg19_v1_chr8_+_68256207	-389951	+	NM_006421 TSC_hg19_v1_chr8_-_68256017	-390141	-	TSC_hg19_v1_chr8_+_67976626 AM156947 BX649147 NM_024790 BC029445 AK096205 AB527449 AK127108	-669470	+	AF221594 AY044833 BC033684 NM_020361	12492	-	TSC_hg19_v1_chr8_+_68864347 BC068571 BC036055 AJ437636	218246	+	TSC_hg19_v1_chr8_+_68864598 AY508996 AY508997 NM_024870 NM_025170	218489	+	NM_006421|ARFGEF1|10565|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)##AM156947|CSPP1|79848|centrosome and spindle pole associated protein 1##BX649147|CSPP1|79848|centrosome and spindle pole associated protein 1##NM_024790|CSPP1|79848|centrosome and spindle pole associated protein 1##BC029445|CSPP1|79848|centrosome and spindle pole associated protein 1##AK096205|CSPP1|79848|centrosome and spindle pole associated protein 1##AK127108|CSPP1|79848|centrosome and spindle pole associated protein 1##AF221594|CPA6|57094|carboxypeptidase A6##AY044833|CPA6|57094|carboxypeptidase A6##BC033684|CPA6|57094|carboxypeptidase A6##NM_020361|CPA6|57094|carboxypeptidase A6##AJ437636|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508996|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508997|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_024870|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_025170|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	0.995278	0.0	
chr11	71134443	71134597	reg1007122.p1	6.301	+	TSC_hg19_v1_chr11_-_70963627 AK096045	-170895	-	AB208025 NM_012309	-198713	-	TSC_hg19_v1_chr11_-_70858244 DQ152234	-276214	-	TSC_hg19_v1_chr11_-_71159417 AF034544 BC000054 AK312775 AK289497	24885	-	TSC_hg19_v1_chr11_-_71159471 AK303881 NM_001163817 NM_001360	24942	-	NM_018161 TSC_hg19_v1_chr11_+_71164256 AK022436 BC003638 BC003666	29716	+	AK096045|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##AB208025|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##NM_012309|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##DQ152234|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##AF034544|DHCR7|1717|7-dehydrocholesterol reductase##BC000054|DHCR7|1717|7-dehydrocholesterol reductase##AK312775|DHCR7|1717|7-dehydrocholesterol reductase##AK289497|DHCR7|1717|7-dehydrocholesterol reductase##AK303881|DHCR7|1717|7-dehydrocholesterol reductase##NM_001163817|DHCR7|1717|7-dehydrocholesterol reductase##NM_001360|DHCR7|1717|7-dehydrocholesterol reductase##NM_018161|NADSYN1|55191|NAD synthetase 1##AK022436|NADSYN1|55191|NAD synthetase 1##BC003638|NADSYN1|55191|NAD synthetase 1##BC003666|NADSYN1|55191|NAD synthetase 1	0.9863	0.0	denovo_WM_7:-16:0.976
chr12	4378597	4378710	reg1000554.p1	6.301	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-396153	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-516271	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-516385	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	4391	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	51738	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	110147	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	0.0	0.0	
chr2	99453831	99453959	reg1000146.p2	6.301	+	NM_012214 TSC_hg19_v1_chr2_-_99347596	-106282	-	TSC_hg19_v1_chr2_-_99347557 AK314024	-106399	-	AK304393 AK309852 NM_001160154	-173960	-	BC068277 NM_207362	98785	-	BC028366 NM_182911	304140	-	AK126402 AK314133 BC021264 NM_144706	304170	+	NM_012214|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK314024|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK304393|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK309852|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##NM_001160154|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##BC068277|C2orf55|343990|chromosome 2 open reading frame 55##NM_207362|C2orf55|343990|chromosome 2 open reading frame 55##BC028366|TSGA10|80705|testis specific, 10##NM_182911|TSGA10|80705|testis specific, 10##AK314133|C2orf15|150590|chromosome 2 open reading frame 15##BC021264|C2orf15|150590|chromosome 2 open reading frame 15##NM_144706|C2orf15|150590|chromosome 2 open reading frame 15	0.211024	0.0	
chr17	30216812	30216925	reg1005851.p2	6.300	+	AF407672 AJ272196 TSC_hg19_v1_chr17_-_30186264 AK024772 BC012386 BC035483 NM_018405	-30597	-	TSC_hg19_v1_chr17_+_29815032 AK097424	-401807	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	-498004	+	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	11798	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	11863	-	TSC_hg19_v1_chr17_-_30228769 AK299806	11896	-	AF407672|C17orf79|55352|chromosome 17 open reading frame 79##AJ272196|C17orf79|55352|chromosome 17 open reading frame 79##AK024772|C17orf79|55352|chromosome 17 open reading frame 79##BC012386|C17orf79|55352|chromosome 17 open reading frame 79##BC035483|C17orf79|55352|chromosome 17 open reading frame 79##NM_018405|C17orf79|55352|chromosome 17 open reading frame 79##AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)	0.0	0.0	
chr7	74039702	74039882	reg1003151.p1	6.300	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-171357	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-171484	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-171628	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	32229	+	TSC_hg19_v1_chr7_+_74072046 BC070484	32252	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	32330	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.93883	0.0	denovo_WM_7:-95:0.592
chr17	29136088	29136268	reg1006974.p2	6.299	+	TSC_hg19_v1_chr17_+_29058664 BC047718	-77490	+	BC096718 BC098126 BC098273 NM_015594	-249595	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-331745	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	15497	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	15585	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	22807	+	BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5	0.087472	0.0	
chr2	11301309	11301457	reg1006660.p2	6.298	+	AK301439 AK313402 TSC_hg19_v1_chr2_+_11295602	-5781	+	TSC_hg19_v1_chr2_+_11295592 AK001091	-5802	+	BC027625 NM_152391 TSC_hg19_v1_chr2_+_11295562	-5832	+	TSC_hg19_v1_chr2_-_11484762 AB014519 NM_004850	183362	-	BC107740 TSC_hg19_v1_chr2_-_11606272 BC008348 BC062610 AK290413 AK293504	304861	-	TSC_hg19_v1_chr2_-_11606278 AK223407 AY083996 NM_198256	304903	-	AK301439|PQLC3|130814|PQ loop repeat containing 3##AK313402|PQLC3|130814|PQ loop repeat containing 3##AK001091|PQLC3|130814|PQ loop repeat containing 3##BC027625|PQLC3|130814|PQ loop repeat containing 3##NM_152391|PQLC3|130814|PQ loop repeat containing 3##AB014519|ROCK2|9475|Rho-associated, coiled-coil containing protein kinase 2##NM_004850|ROCK2|9475|Rho-associated, coiled-coil containing protein kinase 2##BC107740|E2F6|1876|E2F transcription factor 6##BC008348|E2F6|1876|E2F transcription factor 6##BC062610|E2F6|1876|E2F transcription factor 6##AK290413|E2F6|1876|E2F transcription factor 6##AK293504|E2F6|1876|E2F transcription factor 6##AK223407|E2F6|1876|E2F transcription factor 6##AY083996|E2F6|1876|E2F transcription factor 6##NM_198256|E2F6|1876|E2F transcription factor 6	0.992118	0.0	denovo_WM_7:11:0.575	denovo_WM_7:15:0.241
chr17	16102453	16102619	reg1006510.p1	6.297	+	AB385422 AB028970 BC167431 NM_001190438 NM_001190440 AF087856 AF303586	-4618	-	TSC_hg19_v1_chr17_-_15973765 AL137641	-128750	-	TSC_hg19_v1_chr17_+_15903137 AK055780 AK297783 BC073796 BC011698	-199379	+	BC056862 BC035748 BC142648 BC026028 AK307614 TSC_hg19_v1_chr17_-_16118849 AF044209 BC050594 BC068996 BC058511 BC107772 NM_006311	16304	-	TSC_hg19_v1_chr17_+_16120523 NM_004278 AK292932 AK302523 AK296120 BC068197 AB017165 CU686621	17970	+	TSC_hg19_v1_chr17_-_16256747 AF514992 NM_181716 BC052604	154226	-	AB028970|NCOR1|9611|nuclear receptor corepressor 1##BC167431|NCOR1|9611|nuclear receptor corepressor 1##NM_001190438|NCOR1|9611|nuclear receptor corepressor 1##NM_001190440|NCOR1|9611|nuclear receptor corepressor 1##AF087856|NCOR1|9611|nuclear receptor corepressor 1##AF303586|NCOR1|9611|nuclear receptor corepressor 1##AL137641|NCOR1|9611|nuclear receptor corepressor 1##AK055780|TTC19|54902|tetratricopeptide repeat domain 19##AK297783|TTC19|54902|tetratricopeptide repeat domain 19##BC073796|TTC19|54902|tetratricopeptide repeat domain 19##BC011698|TTC19|54902|tetratricopeptide repeat domain 19##BC056862|NCOR1|9611|nuclear receptor corepressor 1##BC035748|NCOR1|9611|nuclear receptor corepressor 1##BC142648|NCOR1|9611|nuclear receptor corepressor 1##BC026028|NCOR1|9611|nuclear receptor corepressor 1##AK307614|NCOR1|9611|nuclear receptor corepressor 1##AF044209|NCOR1|9611|nuclear receptor corepressor 1##BC050594|NCOR1|9611|nuclear receptor corepressor 1##BC068996|NCOR1|9611|nuclear receptor corepressor 1##BC058511|NCOR1|9611|nuclear receptor corepressor 1##BC107772|NCOR1|9611|nuclear receptor corepressor 1##NM_006311|NCOR1|9611|nuclear receptor corepressor 1##NM_004278|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AK292932|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AK302523|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AK296120|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##BC068197|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AB017165|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AF514992|CENPV|201161|centromere protein V##NM_181716|CENPV|201161|centromere protein V##BC052604|CENPV|201161|centromere protein V	1.978732	0.0	denovo_WM_7:-9:0.785	denovo_WM_7:-63:0.490	denovo_WM_7:-64:0.285	denovo_WM_7:-65:0.214
chr1	171575477	171575657	reg1007708.p1	6.296	+	AF253978 AL096857 TSC_hg19_v1_chr1_+_171481269 AF488829	-94315	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	-120873	+	BC002780 NM_002022 Z11737	-292139	+	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	46233	-	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	135668	-	AK092254 TSC_hg19_v1_chr1_+_171711293	135720	+	AF253978|PRRC2C|23215|proline-rich coiled-coil 2C##AL096857|PRRC2C|23215|proline-rich coiled-coil 2C##AF488829|PRRC2C|23215|proline-rich coiled-coil 2C##BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4	0.974287	0.0	denovo_WM_7:-16:0.910
chr12	69290997	69291166	reg1006454.p1	6.295	+	EU076746 EU076747 EU076748 EU076749 TSC_hg19_v1_chr12_+_69202803	-88280	+	TSC_hg19_v1_chr12_+_69201980 AK290341	-89089	+	TSC_hg19_v1_chr12_+_69201958 BC009893 BC013887 BC067077 M92424 NM_002392 Z12020	-89170	+	TSC_hg19_v1_chr12_-_69326952 AF368463 AK313180 BC022276 NM_001005502 NM_198320	35881	-	J04970 NM_001874 AK127859	65938	-	NM_007007 TSC_hg19_v1_chr12_+_69633348 AK223568 AK299928	342252	+	EU076746|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076747|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076748|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076749|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AK290341|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##M92424|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##NM_002392|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##Z12020|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AF368463|CPM|1368|carboxypeptidase M##AK313180|CPM|1368|carboxypeptidase M##BC022276|CPM|1368|carboxypeptidase M##NM_001005502|CPM|1368|carboxypeptidase M##NM_198320|CPM|1368|carboxypeptidase M##J04970|CPM|1368|carboxypeptidase M##NM_001874|CPM|1368|carboxypeptidase M##AK127859|CPM|1368|carboxypeptidase M##NM_007007|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK223568|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK299928|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa	0.997324	0.0	denovo_WM_7:-21:0.920
chr12	69753348	69753488	reg1006539.p2	6.295	+	TSC_hg19_v1_chr12_+_69742163 AK310930 AK311779 J03801 FJ795023 BC004147 M21119 M19045 AB463851 DQ892271 DQ895472 U25677	-11209	+	TSC_hg19_v1_chr12_+_69742133 AK130149 NM_000239	-11287	+	TSC_hg19_v1_chr12_+_69633357 BC005000 BC000714 X67337 AK292024 CU674352 CU678850 DQ892159 EU176688	-120029	+	TSC_hg19_v1_chr12_+_69753535 NM_006530 U61384 AJ245746 BC000994 AK001413 AB464359 EU446926	188	+	TSC_hg19_v1_chr12_+_69864170 NM_001042555 NM_006654 BC021562 AK312477	110724	+	TSC_hg19_v1_chr12_+_69979238 NM_006431 AK290767 BC113514 BC113516 AK297685 AF026166	225806	+	AK311779|LYZ|4069|lysozyme##J03801|LYZ|4069|lysozyme##FJ795023|LYZ|4069|lysozyme##BC004147|LYZ|4069|lysozyme##M21119|LYZ|4069|lysozyme##M19045|LYZ|4069|lysozyme##DQ892271|LYZ|4069|lysozyme##DQ895472|LYZ|4069|lysozyme##U25677|LYZ|4069|lysozyme##AK130149|LYZ|4069|lysozyme##NM_000239|LYZ|4069|lysozyme##BC005000|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##BC000714|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##X67337|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK292024|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##DQ892159|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##EU176688|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##NM_006530|YEATS4|8089|YEATS domain containing 4##U61384|YEATS4|8089|YEATS domain containing 4##AJ245746|YEATS4|8089|YEATS domain containing 4##BC000994|YEATS4|8089|YEATS domain containing 4##AK001413|YEATS4|8089|YEATS domain containing 4##EU446926|YEATS4|8089|YEATS domain containing 4##NM_001042555|FRS2|10818|fibroblast growth factor receptor substrate 2##NM_006654|FRS2|10818|fibroblast growth factor receptor substrate 2##BC021562|FRS2|10818|fibroblast growth factor receptor substrate 2##AK312477|FRS2|10818|fibroblast growth factor receptor substrate 2##NM_006431|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK290767|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##BC113514|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##BC113516|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK297685|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AF026166|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)	0.711169	0.0	denovo_WM_7:-15:0.241	denovo_WM_7:-21:0.387
chr12	123010229	123010341	reg1004701.p1	6.294	+	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	-24767	-	TSC_hg19_v1_chr12_-_122985404 BC065918	-24858	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	-103048	-	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	1223	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	1519	+	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	177587	-	AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2	1.996209	0.0	
chr19	47328939	47329091	reg1001286.p2	6.293	+	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-37293	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-37742	-	AK293433 AK301661 NM_001145144	-38473	-	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	25116	-	AB051509 AF159851 BC131565 BC150257 NM_004491	92917	+	TSC_hg19_v1_chr19_+_47523068 BC039016	194061	+	AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK293433|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK301661|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145144|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1	1.619372	0.0	denovo_WM_7:67:0.536	denovo_WM_7:70:0.281
chr4	71049421	71049554	reg1005110.p1	6.293	+	NM_214711 BX640924 BX648724 BX648895 BX647185 BX640892 BX647183 BX648872 AB528838 AM393471 BC146696	-29490	+	BC017835 NM_002159	-133329	+	NM_000200 BC009791 BC095438 M26665	-155335	+	EF113908 NM_017855	12755	+	AY190326 NM_152997 AY358958 BC062213 AF435080 AF086120	42335	+	BC010935 NM_005212 X66417	58844	+	NM_214711|C4orf40|401137|chromosome 4 open reading frame 40##BX640924|C4orf40|401137|chromosome 4 open reading frame 40##BX648724|C4orf40|401137|chromosome 4 open reading frame 40##BX648895|C4orf40|401137|chromosome 4 open reading frame 40##BX647185|C4orf40|401137|chromosome 4 open reading frame 40##BX640892|C4orf40|401137|chromosome 4 open reading frame 40##BX647183|C4orf40|401137|chromosome 4 open reading frame 40##BX648872|C4orf40|401137|chromosome 4 open reading frame 40##AM393471|C4orf40|401137|chromosome 4 open reading frame 40##BC146696|C4orf40|401137|chromosome 4 open reading frame 40##BC017835|HTN1|3346|histatin 1##NM_002159|HTN1|3346|histatin 1##NM_000200|HTN3|3347|histatin 3##BC009791|HTN3|3347|histatin 3##BC095438|HTN3|3347|histatin 3##M26665|HTN3|3347|histatin 3##EF113908|ODAM|54959|odontogenic, ameloblast asssociated##NM_017855|ODAM|54959|odontogenic, ameloblast asssociated##AY190326|C4orf7|260436|chromosome 4 open reading frame 7##NM_152997|C4orf7|260436|chromosome 4 open reading frame 7##AY358958|C4orf7|260436|chromosome 4 open reading frame 7##BC062213|C4orf7|260436|chromosome 4 open reading frame 7##AF435080|C4orf7|260436|chromosome 4 open reading frame 7##AF086120|C4orf7|260436|chromosome 4 open reading frame 7##BC010935|CSN3|1448|casein kappa##NM_005212|CSN3|1448|casein kappa##X66417|CSN3|1448|casein kappa	1.08546	0.743112	denovo_WM_7:-20:0.798	CTCF.p2:61:0.743
chr10	74008560	74008740	reg1001942.p2	6.292	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-32539	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-32862	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-32886	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	25174	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	106028	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	106276	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	0.020366	0.0	
chr1	219348172	219348339	reg1006409.p1	6.291	+	TSC_hg19_v1_chr1_+_219347219 AK123628 AK309689 AK291542 BC016711 AK129913 AY341430	-1013	+	TSC_hg19_v1_chr1_+_219347170 NM_138794	-1097	+	M19154 TSC_hg19_v1_chr1_+_218519634	-828650	+	BC036078 TSC_hg19_v1_chr1_-_220101540	753274	-	AB464233 TSC_hg19_v1_chr1_-_220101784	753536	-	TSC_hg19_v1_chr1_-_220101974 AY212919 AK090806 AX746624 NM_018713	753710	-	AK123628|LYPLAL1|127018|lysophospholipase-like 1##AK309689|LYPLAL1|127018|lysophospholipase-like 1##AK291542|LYPLAL1|127018|lysophospholipase-like 1##BC016711|LYPLAL1|127018|lysophospholipase-like 1##AK129913|LYPLAL1|127018|lysophospholipase-like 1##AY341430|LYPLAL1|127018|lysophospholipase-like 1##NM_138794|LYPLAL1|127018|lysophospholipase-like 1##M19154|TGFB2|7042|transforming growth factor, beta 2##BC036078|SLC30A10|55532|solute carrier family 30, member 10##AY212919|SLC30A10|55532|solute carrier family 30, member 10##AK090806|SLC30A10|55532|solute carrier family 30, member 10##NM_018713|SLC30A10|55532|solute carrier family 30, member 10	0.343629	0.0	denovo_WM_7:-65:0.344
chr14	93143573	93143753	reg1001287.p1	6.291	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-24840	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-25027	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-163704	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	71296	-	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	117023	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	245781	+	AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	0.0	0.0	
chr5	139107360	139107473	reg1006158.p2	6.291	+	TSC_hg19_v1_chr5_+_139060403 DQ892589 DQ895807	-47024	+	AF151029 TSC_hg19_v1_chr5_+_139060229	-47204	+	BC002490 TSC_hg19_v1_chr5_+_139060088 AB463548 GQ379202 AK314420	-47332	+	TSC_hg19_v1_chr5_+_139175392 AL136559 NM_032289 BC038233	67990	+	BC103983 BC103984 BC114333 BC114334 TSC_hg19_v1_chr5_-_139422732	315312	-	U92987 TSC_hg19_v1_chr5_-_139422858 AB005060 AK124504 NM_001184935 NM_004883 NM_013981 NM_013982 NM_013983	315429	-	DQ892589|CXXC5|51523|CXXC finger protein 5##DQ895807|CXXC5|51523|CXXC finger protein 5##AF151029|CXXC5|51523|CXXC finger protein 5##BC002490|CXXC5|51523|CXXC finger protein 5##GQ379202|CXXC5|51523|CXXC finger protein 5##AK314420|CXXC5|51523|CXXC finger protein 5##AL136559|PSD2|84249|pleckstrin and Sec7 domain containing 2##NM_032289|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC038233|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC103983|NRG2|9542|neuregulin 2##BC103984|NRG2|9542|neuregulin 2##BC114333|NRG2|9542|neuregulin 2##BC114334|NRG2|9542|neuregulin 2##U92987|NRG2|9542|neuregulin 2##AB005060|NRG2|9542|neuregulin 2##AK124504|NRG2|9542|neuregulin 2##NM_001184935|NRG2|9542|neuregulin 2##NM_004883|NRG2|9542|neuregulin 2##NM_013981|NRG2|9542|neuregulin 2##NM_013982|NRG2|9542|neuregulin 2##NM_013983|NRG2|9542|neuregulin 2	0.99174	0.0	denovo_WM_7:33:0.331	denovo_WM_7:34:0.331	denovo_WM_7:35:0.331
chr14	58725094	58725256	reg1007382.p1	6.290	+	TSC_hg19_v1_chr14_+_58711605 BC038990 D00762 DQ892645 DQ895883 AB464085 BT006711 BT019715 CR456933 CU688640	-13545	+	TSC_hg19_v1_chr14_+_58711570 AK315158 BC029402 BC005265	-13601	+	TSC_hg19_v1_chr14_+_58711551 NM_002788 NM_152132	-13670	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	39658	-	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	40066	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	40143	+	BC038990|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##D00762|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ892645|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ895883|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT006711|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT019715|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##CR456933|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK315158|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC029402|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC005265|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_002788|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_152132|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)	1.012394	0.0	
chr20	7368615	7368700	reg1003363.p2	6.290	+	BC069214 NM_001200	-619913	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-1264494	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-1264780	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	552445	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	631643	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	631750	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	1.994639	0.0	
chr4	25881999	25882179	reg1003986.p2	6.290	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-17535	-	NM_001177999 AK314514	-223999	+	NM_001177998 NM_006424 AK292675 AF111856 AK075046 TSC_hg19_v1_chr4_+_25657473 AF146796 BC142704 BC146666	-224629	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	33775	+	L07875 BC020780 NM_005349 NM_203283	439230	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	440220	+	BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001177998|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_006424|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK292675|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF111856|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK075046|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF146796|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC142704|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC146666|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.994412	0.0	denovo_WM_7:41:0.668	denovo_WM_7:42:0.259
chr4	40057387	40057567	reg1005634.p2	6.290	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-77884	-	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	-78139	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-357673	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	1055	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	141164	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	279968	+	BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9	0.0	0.016407	
chr22	18457982	18458162	reg1006345.p2	6.289	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-200738	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-200849	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-200865	-	TSC_hg19_v1_chr22_-_18484268 AK127487	26156	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	49189	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	102616	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.0	0.0	
chr18	4354858	4355030	reg1006127.p2	6.288	+	AK294777 AK294717 NM_001242762 NM_001242763	-480217	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-480660	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-509614	-	AK304101 TSC_hg19_v1_chr18_-_4455255	100309	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	100326	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	842308	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	1.993189	0.0	denovo_WM_7:-26:0.221	denovo_WM_7:-48:0.221
chr2	20187590	20187751	reg1003247.p1	6.288	+	CU691276 BC070381 TSC_hg19_v1_chr2_-_20101717 BC057850 NM_001008237	-85989	-	TSC_hg19_v1_chr2_-_20101456 BC050088	-86242	-	AK022396 BC068572 TSC_hg19_v1_chr2_+_20068650 AK097927	-119035	+	AB385451 AK122917 AK315094 BC036659 NM_001006657 NM_020779 AB037757 TSC_hg19_v1_chr2_-_20189911	2173	-	AJ224741 BC139907 TSC_hg19_v1_chr2_-_20212430 EU541440	24750	-	TSC_hg19_v1_chr2_-_20212456 AK290856 NM_002381	24795	-	BC070381|TTC32|130502|tetratricopeptide repeat domain 32##BC057850|TTC32|130502|tetratricopeptide repeat domain 32##NM_001008237|TTC32|130502|tetratricopeptide repeat domain 32##AK022396|FLJ12334|400946|uncharacterized LOC400946##BC068572|FLJ12334|400946|uncharacterized LOC400946##AK097927|FLJ12334|400946|uncharacterized LOC400946##AK122917|WDR35|57539|WD repeat domain 35##AK315094|WDR35|57539|WD repeat domain 35##BC036659|WDR35|57539|WD repeat domain 35##NM_001006657|WDR35|57539|WD repeat domain 35##NM_020779|WDR35|57539|WD repeat domain 35##AB037757|WDR35|57539|WD repeat domain 35##AJ224741|MATN3|4148|matrilin 3##BC139907|MATN3|4148|matrilin 3##EU541440|MATN3|4148|matrilin 3##AK290856|MATN3|4148|matrilin 3##NM_002381|MATN3|4148|matrilin 3	0.998289	0.0	
chr3	196168516	196168634	reg1004972.p1	6.288	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-9242	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-9276	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-9292	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	62003	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	73638	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	126815	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.996984	0.0	
chr5	74819942	74820084	reg1006240.p1	6.288	+	NM_001130105	-12208	-	AF163570 NM_016218 TSC_hg19_v1_chr5_+_74807715 AK091659 AK314610 AK026316 AF194973 AF315601 AF318313	-12277	+	TSC_hg19_v1_chr5_-_74807448 AK091851 AK292087 AX747221 NM_005713 NM_031361	-12544	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	188249	-	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	193247	-	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	559258	+	NM_001130105|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AF163570|POLK|51426|polymerase (DNA directed) kappa##NM_016218|POLK|51426|polymerase (DNA directed) kappa##AK091659|POLK|51426|polymerase (DNA directed) kappa##AK314610|POLK|51426|polymerase (DNA directed) kappa##AK026316|POLK|51426|polymerase (DNA directed) kappa##AF194973|POLK|51426|polymerase (DNA directed) kappa##AF318313|POLK|51426|polymerase (DNA directed) kappa##AK091851|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AK292087|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##NM_005713|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##NM_031361|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C	0.992424	0.0	denovo_WM_7:-51:0.978
chr1	192443350	192443494	reg1008900.p1	6.287	+	AY643711 NM_001039152	-157301	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-315819	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-1996687	-	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	101486	+	NM_002927 NM_144766 AF030107 BC016667	161862	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	334762	+	AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa	0.0	0.755347	CTCF.p2:-23:0.755
chr14	54863305	54863461	reg1008903.p1	6.287	+	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	-439850	-	NM_130851	-442114	-	TSC_hg19_v1_chr14_-_53620035 NM_001160147 NM_001160148 NM_030637	-1243333	-	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	338	+	TSC_hg19_v1_chr14_-_54908095 BX248284 AY358635 AK074781 AK307074 AK311897 AF070654 AF104398 NM_005776 BC103741	44733	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	92302	-	BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##NM_130851|BMP4|652|bone morphogenetic protein 4##NM_001160147|DDHD1|80821|DDHD domain containing 1##NM_001160148|DDHD1|80821|DDHD domain containing 1##NM_030637|DDHD1|80821|DDHD domain containing 1##AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BX248284|CNIH|10175|cornichon homolog (Drosophila)##AY358635|CNIH|10175|cornichon homolog (Drosophila)##AK074781|CNIH|10175|cornichon homolog (Drosophila)##AK307074|CNIH|10175|cornichon homolog (Drosophila)##AK311897|CNIH|10175|cornichon homolog (Drosophila)##AF070654|CNIH|10175|cornichon homolog (Drosophila)##AF104398|CNIH|10175|cornichon homolog (Drosophila)##NM_005776|CNIH|10175|cornichon homolog (Drosophila)##BC103741|CNIH|10175|cornichon homolog (Drosophila)##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta	0.999052	0.0	denovo_WM_7:-26:0.203	denovo_WM_7:-27:0.779
chr6	43348715	43348859	reg1007028.p1	6.287	+	TSC_hg19_v1_chr6_-_43337215 BC098434 AF090114 NM_014345 BC030687	-11545	-	AB463553 AY555741 AY555742 AY555743 AY555744 NM_206922	-72258	-	TSC_hg19_v1_chr6_+_43266009 AK290806 AK309570 AK314822 BC033805 AK290796 BC017963 DQ893614 DQ896844 AF210455 AY050498	-82735	+	TSC_hg19_v1_chr6_+_43395310 AK000002 NM_001198934	46526	+	AY032599 NM_033450	50701	+	AY358126 NM_023932 BC110320	74485	-	BC098434|ZNF318|24149|zinc finger protein 318##AF090114|ZNF318|24149|zinc finger protein 318##NM_014345|ZNF318|24149|zinc finger protein 318##BC030687|ZNF318|24149|zinc finger protein 318##AY555741|CRIP3|401262|cysteine-rich protein 3##AY555742|CRIP3|401262|cysteine-rich protein 3##AY555743|CRIP3|401262|cysteine-rich protein 3##AY555744|CRIP3|401262|cysteine-rich protein 3##NM_206922|CRIP3|401262|cysteine-rich protein 3##AK290806|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK309570|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK314822|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC033805|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK290796|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC017963|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ893614|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ896844|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF210455|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AY050498|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK000002|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_001198934|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##AY032599|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_033450|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##AY358126|DLK2|65989|delta-like 2 homolog (Drosophila)##NM_023932|DLK2|65989|delta-like 2 homolog (Drosophila)##BC110320|DLK2|65989|delta-like 2 homolog (Drosophila)	0.963978	0.0	denovo_WM_7:37:0.225	denovo_WM_7:39:0.515
chr10	121484365	121484541	reg1005694.p1	6.286	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-73317	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-73378	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-73400	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	1085	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	1161	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	1252	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	1.120412	0.0	
chr17	3814375	3814555	reg1002165.p1	6.286	+	AL136576 NM_032294 NM_172207 TSC_hg19_v1_chr17_-_3796348	-18122	-	BC031647 TSC_hg19_v1_chr17_-_3796278 AF425232 BC043487	-18174	-	AF425301 NM_172206	-20429	-	X83688 U45448 BC044657 BC027949 TSC_hg19_v1_chr17_-_3819762 AK310981 AK313264 AF020498	5283	-	NM_002558	5494	-	AB462957 DQ893317 EU176809 Z69881 TSC_hg19_v1_chr17_-_3867744 AF068220 BC035729 AK292716 NM_005173 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958	53236	-	AL136576|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_032294|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172207|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC031647|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AF425232|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC043487|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AF425301|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172206|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##X83688|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##U45448|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC044657|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC027949|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AK313264|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AF020498|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##NM_002558|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##DQ893317|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##EU176809|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##Z69881|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AF068220|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##BC035729|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AK292716|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_005173|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174953|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174954|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174955|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174956|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174957|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174958|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous	0.993049	0.0	denovo_WM_7:-7:0.314	denovo_WM_7:-8:0.314	denovo_WM_7:-9:0.314
chr11	62625196	62625302	reg1004469.p2	6.285	+	TSC_hg19_v1_chr11_+_62623580 NM_001012662 NM_001012664 NM_002394 BC001061 AK025584 BC003000	-1699	+	BC000839 BC027980 BC011809 BC017253 BC063571 TSC_hg19_v1_chr11_-_62623358 AK095849	-1964	-	AK001301 NM_018093	-17622	-	TSC_hg19_v1_chr11_+_62648367 NM_001013251 AK304685 AK090758 AX746603 J03569 AK304497 AB018010 J02939 AK225304 J02769 EU832612 EU832683	23258	+	TSC_hg19_v1_chr11_+_62649170 AK308797 AK311592 AF055031	23943	+	BC007740 AK312374 TSC_hg19_v1_chr11_-_62688827	63534	-	NM_001012662|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_001012664|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_002394|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC001061|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK025584|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC003000|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC000839|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC027980|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC011809|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC017253|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC063571|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK095849|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK001301|WDR74|54663|WD repeat domain 74##NM_018093|WDR74|54663|WD repeat domain 74##NM_001013251|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304685|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK090758|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J03569|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304497|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AB018010|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02939|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK225304|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02769|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832612|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832683|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK308797|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK311592|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AF055031|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC007740|CHRM1|1128|cholinergic receptor, muscarinic 1##AK312374|CHRM1|1128|cholinergic receptor, muscarinic 1	1.791811	0.0	denovo_WM_7:-58:0.390	denovo_WM_7:-60:0.355	denovo_WM_7:-73:0.405	denovo_WM_7:-75:0.348
chr15	50670153	50670323	reg1007179.p1	6.285	+	TSC_hg19_v1_chr15_+_50647681 BX537481	-22567	+	NM_002041 NM_005254 NM_016654 NM_016655 NM_181427	-22634	-	D13317 TSC_hg19_v1_chr15_-_50647396 AK301350 BC036080	-22846	-	TSC_hg19_v1_chr15_+_50716601 AK292400 BX537420 NM_001128610 NM_001128611 NM_005154 AK296480 BC038801 D29956 BC015545 BC110590 BC092443 BC026954 BC051345	46383	+	NM_203494	168663	-	TSC_hg19_v1_chr15_-_50978746 BC128987 BC128988	308528	-	BX537481|LOC100129387|100129387|uncharacterized LOC100129387##NM_002041|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_005254|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016654|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016655|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_181427|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##D13317|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK301350|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##BC036080|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK292400|USP8|9101|ubiquitin specific peptidase 8##BX537420|USP8|9101|ubiquitin specific peptidase 8##NM_001128610|USP8|9101|ubiquitin specific peptidase 8##NM_001128611|USP8|9101|ubiquitin specific peptidase 8##NM_005154|USP8|9101|ubiquitin specific peptidase 8##AK296480|USP8|9101|ubiquitin specific peptidase 8##BC038801|USP8|9101|ubiquitin specific peptidase 8##D29956|USP8|9101|ubiquitin specific peptidase 8##BC015545|USP8|9101|ubiquitin specific peptidase 8##BC110590|USP8|9101|ubiquitin specific peptidase 8##BC092443|USP8|9101|ubiquitin specific peptidase 8##BC026954|USP8|9101|ubiquitin specific peptidase 8##BC051345|USP8|9101|ubiquitin specific peptidase 8##NM_203494|USP50|373509|ubiquitin specific peptidase 50##BC128987|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##BC128988|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7	0.0	0.0	
chr15	80310250	80310410	reg1004573.p1	6.285	+	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	-46779	-	TSC_hg19_v1_chr15_-_80216042 AF249277	-94292	-	NM_001100880 NM_001199757	-94667	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	41612	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	41699	+	TSC_hg19_v1_chr15_+_80352046 AL136598	41737	+	BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6##AL136598|ZFAND6|54469|zinc finger, AN1-type domain 6	0.0	0.0	
chr17	27608599	27608779	reg1008284.p1	6.285	+	NM_005208 BC113693 BC069537 CU686900 HQ258110	-34812	+	TSC_hg19_v1_chr17_-_27507417 CR933614 NM_078471 NM_203318 D86970	-101339	-	TSC_hg19_v1_chr17_-_27467408 AB177860 AY703984 AK303522 AK302725	-141278	-	AB385448 AJ493465 BC129989 BC129990 BC108307 AK297732 TSC_hg19_v1_chr17_-_27621134 AB037742 AY232289	12421	-	TSC_hg19_v1_chr17_-_27621167 AK293075 NM_020772	12476	-	NM_020791 NM_025142 BC133039 BC144067	109256	+	NM_005208|CRYBA1|1411|crystallin, beta A1##BC113693|CRYBA1|1411|crystallin, beta A1##BC069537|CRYBA1|1411|crystallin, beta A1##HQ258110|CRYBA1|1411|crystallin, beta A1##CR933614|MYO18A|399687|myosin XVIIIA##NM_078471|MYO18A|399687|myosin XVIIIA##NM_203318|MYO18A|399687|myosin XVIIIA##D86970|MYO18A|399687|myosin XVIIIA##AB177860|MYO18A|399687|myosin XVIIIA##AY703984|MYO18A|399687|myosin XVIIIA##AK303522|MYO18A|399687|myosin XVIIIA##AK302725|MYO18A|399687|myosin XVIIIA##AJ493465|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129989|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129990|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC108307|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK297732|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AB037742|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AY232289|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK293075|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020772|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020791|TAOK1|57551|TAO kinase 1##NM_025142|TAOK1|57551|TAO kinase 1##BC133039|TAOK1|57551|TAO kinase 1##BC144067|TAOK1|57551|TAO kinase 1	1.128314	0.0	
chr17	42425262	42425399	reg1007044.p1	6.285	+	TSC_hg19_v1_chr17_+_42422669 AK000607 AK222522 AK296090 X62320 AK303830	-2654	+	TSC_hg19_v1_chr17_+_42422640 AF055008	-2693	+	BC000324 NM_002087 TSC_hg19_v1_chr17_+_42422623	-2774	+	TSC_hg19_v1_chr17_-_42441222 BC030200 NM_198475	15892	-	AB528003 J02764 BC117443 BC126442 AK297155 AK315335 M34480 NM_000419	41526	-	TSC_hg19_v1_chr17_-_42580760 BC136629 BC144323 AK025600 BC140010	155434	-	AK000607|GRN|2896|granulin##AK222522|GRN|2896|granulin##AK296090|GRN|2896|granulin##X62320|GRN|2896|granulin##AK303830|GRN|2896|granulin##AF055008|GRN|2896|granulin##BC000324|GRN|2896|granulin##NM_002087|GRN|2896|granulin##BC030200|FAM171A2|284069|family with sequence similarity 171, member A2##NM_198475|FAM171A2|284069|family with sequence similarity 171, member A2##J02764|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##BC117443|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##BC126442|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##AK297155|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##AK315335|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##M34480|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##NM_000419|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##BC136629|GPATCH8|23131|G patch domain containing 8##BC144323|GPATCH8|23131|G patch domain containing 8##AK025600|GPATCH8|23131|G patch domain containing 8##BC140010|GPATCH8|23131|G patch domain containing 8	0.99702	0.0	denovo_WM_7:-25:0.313	denovo_WM_7:-26:0.313	denovo_WM_7:-27:0.313
chr21	38564438	38564575	reg1005716.p1	6.285	+	D83077 NM_003316	-109260	+	TSC_hg19_v1_chr21_+_38445570 AK297921 BC092466 NM_001001894 AK291992 AK299991	-118889	+	AB035742 AB037162 TSC_hg19_v1_chr21_-_38445400 NM_153682	-119083	-	BC029827 TSC_hg19_v1_chr21_+_38593064	28553	+	TSC_hg19_v1_chr21_-_38639617 AK316460 AK299662	75102	-	TSC_hg19_v1_chr21_-_38639642 AJ001867 AK300024 AK312707 D87343 NM_006052 AK303624	75322	-	D83077|TTC3|7267|tetratricopeptide repeat domain 3##NM_003316|TTC3|7267|tetratricopeptide repeat domain 3##AK297921|TTC3|7267|tetratricopeptide repeat domain 3##BC092466|TTC3|7267|tetratricopeptide repeat domain 3##NM_001001894|TTC3|7267|tetratricopeptide repeat domain 3##AK291992|TTC3|7267|tetratricopeptide repeat domain 3##AK299991|TTC3|7267|tetratricopeptide repeat domain 3##AB035742|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB037162|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##NM_153682|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##BC029827|DSCR9|257203|Down syndrome critical region gene 9 (non-protein coding)##AK316460|DSCR3|10311|Down syndrome critical region gene 3##AK299662|DSCR3|10311|Down syndrome critical region gene 3##AJ001867|DSCR3|10311|Down syndrome critical region gene 3##AK300024|DSCR3|10311|Down syndrome critical region gene 3##AK312707|DSCR3|10311|Down syndrome critical region gene 3##D87343|DSCR3|10311|Down syndrome critical region gene 3##NM_006052|DSCR3|10311|Down syndrome critical region gene 3##AK303624|DSCR3|10311|Down syndrome critical region gene 3	0.998949	0.0	denovo_WM_7:30:0.479	denovo_WM_7:31:0.427
chr6	88435308	88435432	reg1006480.p2	6.285	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-23382	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-23422	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-23461	-	BC029488 NM_030960 AF203447	322160	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	419666	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	440396	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.0	0.0	
chr19	2019687	2019822	reg1003096.p2	6.284	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	-4084	-	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	-78566	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	-78591	+	AL137615 TSC_hg19_v1_chr19_-_2039474 AK024347 AK097012	19747	-	TSC_hg19_v1_chr19_-_2041865 AK092536	22142	-	TSC_hg19_v1_chr19_-_2042036 AK001730	22296	-	AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##AL137615|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK024347|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK097012|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK092536|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2	0.0	0.101867	
chr2	97001249	97001409	reg1007079.p1	6.284	+	NM_178495 NM_001163524 BC034503	-9381	+	TSC_hg19_v1_chr2_+_96991042 NM_001008949 NM_001163523 BC073153	-10243	+	BC015425 TSC_hg19_v1_chr2_-_96987632 BC053735	-13699	-	TSC_hg19_v1_chr2_+_97001479 NM_015341	147	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	207	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	201156	+	NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001008949|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163523|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC073153|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)	0.992549	0.0	denovo_WM_7:-76:0.447	denovo_WM_7:-77:0.447
chr2	168821561	168821700	reg1007326.p1	6.283	+	NM_020981	-146449	+	EF119711 EF119717 NM_001199144 NM_001199145	-777838	+	EF119718 EF119719 EF119720 EF119721 EF119722 NM_001079810 NM_001199143 NM_152381 AK097519	-1076634	+	TSC_hg19_v1_chr2_-_169104075 BC146813 AY629298 AF099989 NM_013233 AF030403	282443	-	TSC_hg19_v1_chr2_+_169312764 AK172775	491129	+	TSC_hg19_v1_chr2_+_169312801 NM_203463 BC109284 BC109285 AB527953	491245	+	NM_020981|B3GALT1|8708|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1##EF119711|XIRP2|129446|xin actin-binding repeat containing 2##EF119717|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199144|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199145|XIRP2|129446|xin actin-binding repeat containing 2##EF119718|XIRP2|129446|xin actin-binding repeat containing 2##EF119719|XIRP2|129446|xin actin-binding repeat containing 2##EF119720|XIRP2|129446|xin actin-binding repeat containing 2##EF119721|XIRP2|129446|xin actin-binding repeat containing 2##EF119722|XIRP2|129446|xin actin-binding repeat containing 2##NM_001079810|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199143|XIRP2|129446|xin actin-binding repeat containing 2##NM_152381|XIRP2|129446|xin actin-binding repeat containing 2##AK097519|XIRP2|129446|xin actin-binding repeat containing 2##BC146813|STK39|27347|serine threonine kinase 39##AF099989|STK39|27347|serine threonine kinase 39##NM_013233|STK39|27347|serine threonine kinase 39##AF030403|STK39|27347|serine threonine kinase 39##AK172775|CERS6|253782|ceramide synthase 6##NM_203463|CERS6|253782|ceramide synthase 6##BC109284|CERS6|253782|ceramide synthase 6##BC109285|CERS6|253782|ceramide synthase 6	0.979654	0.985431	denovo_WM_7:12:0.561	CTCF.p2:-33:0.985
chr8	119633131	119633257	reg1007264.p2	6.283	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-509233	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-1100152	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-1100236	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	931	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	1013	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	331026	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.903966	0.0	denovo_WM_7:17:0.873
chr19	3305066	3305161	reg1005942.p1	6.281	+	BC047522 DQ891648 DQ894837 TSC_hg19_v1_chr19_+_3224751 CU690430 AF329266	-80370	+	BC028101 NM_021938 AB209067 NM_001172673 TSC_hg19_v1_chr19_+_3224705	-80409	+	TSC_hg19_v1_chr19_+_3198814 BC008920	-106288	+	TSC_hg19_v1_chr19_+_3359531 NM_001245005 NM_205843 X12492 AK304816 AK289885	54343	+	TSC_hg19_v1_chr19_+_3366562 NM_001245002 NM_001245004 NM_005597 BC012120	61442	+	TSC_hg19_v1_chr19_+_3366580 AK297867 AK297825	61467	+	BC047522|CELF5|60680|CUGBP, Elav-like family member 5##DQ891648|CELF5|60680|CUGBP, Elav-like family member 5##DQ894837|CELF5|60680|CUGBP, Elav-like family member 5##AF329266|CELF5|60680|CUGBP, Elav-like family member 5##BC028101|CELF5|60680|CUGBP, Elav-like family member 5##NM_021938|CELF5|60680|CUGBP, Elav-like family member 5##AB209067|CELF5|60680|CUGBP, Elav-like family member 5##NM_001172673|CELF5|60680|CUGBP, Elav-like family member 5##BC008920|NCLN|56926|nicalin##NM_001245005|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_205843|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##X12492|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK304816|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK289885|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_001245002|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_001245004|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##NM_005597|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##BC012120|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK297867|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)##AK297825|NFIC|4782|nuclear factor I/C (CCAAT-binding transcription factor)	0.0	0.999281	CTCF.p2:-8:0.999
chr22	17431050	17431192	reg1007487.p1	6.280	+	BC137521 BC137522 BC144679 AY989815 AK098608 AY534240 BC045548 NM_175878	-128552	-	CU689750 BC139842 BC139926 CU013107 CU013395 DQ892082 DQ895275 GQ129410 GQ129411 AB462978 CR456508 BC100811 BC100812 BC100813 BC022006 BC033797 NM_014406	-357552	-	NM_001005239	-981318	-	AB076978 NM_001037814	57990	-	TSC_hg19_v1_chr22_+_17565850 NM_014339	134730	+	TSC_hg19_v1_chr22_+_17565906 BC011624	134781	+	BC137521|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC137522|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC144679|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AY989815|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AK098608|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AY534240|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC045548|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##NM_175878|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC139842|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC139926|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##DQ892082|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##DQ895275|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##GQ129410|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##GQ129411|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##CR456508|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100811|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100812|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100813|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC022006|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC033797|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##NM_014406|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##NM_001005239|OR11H1|81061|olfactory receptor, family 11, subfamily H, member 1##AB076978|GAB4|128954|GRB2-associated binding protein family, member 4##NM_001037814|GAB4|128954|GRB2-associated binding protein family, member 4##NM_014339|IL17RA|23765|interleukin 17 receptor A##BC011624|IL17RA|23765|interleukin 17 receptor A	1.217892	0.0	denovo_WM_7:-11:0.818	denovo_WM_7:-53:0.231
chr9	6681757	6681884	reg1005588.p2	6.280	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-36193	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-268415	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-268623	+	AK310439 NM_001146696	39042	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	75847	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	76219	+	BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C	1.549252	0.0	denovo_WM_7:19:0.727	denovo_WM_7:34:0.552
chr10	23135342	23135456	reg1005358.p1	6.278	+	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	-131909	-	AK294817 TSC_hg19_v1_chr10_-_23003038	-132362	-	TSC_hg19_v1_chr10_+_22726003 AK295718	-409400	+	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	81582	+	BC117471 BC130380 NM_012228 BC018030 TSC_hg19_v1_chr10_+_23384507 AF151889 BC066305 AF122004 EU446941	249084	+	AB463998 NM_178161	346059	+	BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3##BC117471|MSRB2|22921|methionine sulfoxide reductase B2##BC130380|MSRB2|22921|methionine sulfoxide reductase B2##NM_012228|MSRB2|22921|methionine sulfoxide reductase B2##BC018030|MSRB2|22921|methionine sulfoxide reductase B2##AF151889|MSRB2|22921|methionine sulfoxide reductase B2##BC066305|MSRB2|22921|methionine sulfoxide reductase B2##AF122004|MSRB2|22921|methionine sulfoxide reductase B2##EU446941|MSRB2|22921|methionine sulfoxide reductase B2##NM_178161|PTF1A|256297|pancreas specific transcription factor, 1a	0.993714	0.043103	
chr12	28049462	28049596	reg1005490.p1	6.278	+	TSC_hg19_v1_chr12_+_27933193 AK095405 NM_020782 BC137116 BC137117 BC108669 AB528162 AB587405 EU446834	-116318	+	NM_001146221	-125321	-	TSC_hg19_v1_chr12_+_27863764 BC015862 AK075378 AK075515 BC109372 BC063515 BC028346	-185755	+	M26958 J03802 NM_198964 NM_198966 AK313476 M26960 BC005961 M26959	73436	-	NM_002820 NM_198965	75386	-	TSC_hg19_v1_chr12_+_28343404 BC035168	293882	+	AK095405|KLHDC5|57542|kelch domain containing 5##NM_020782|KLHDC5|57542|kelch domain containing 5##BC137116|KLHDC5|57542|kelch domain containing 5##BC137117|KLHDC5|57542|kelch domain containing 5##BC108669|KLHDC5|57542|kelch domain containing 5##EU446834|KLHDC5|57542|kelch domain containing 5##NM_001146221|MANSC4|100287284|MANSC domain containing 4##BC015862|MRPS35|60488|mitochondrial ribosomal protein S35##AK075378|MRPS35|60488|mitochondrial ribosomal protein S35##AK075515|MRPS35|60488|mitochondrial ribosomal protein S35##BC109372|MRPS35|60488|mitochondrial ribosomal protein S35##BC063515|MRPS35|60488|mitochondrial ribosomal protein S35##BC028346|MRPS35|60488|mitochondrial ribosomal protein S35##M26958|PTHLH|5744|parathyroid hormone-like hormone##J03802|PTHLH|5744|parathyroid hormone-like hormone##NM_198964|PTHLH|5744|parathyroid hormone-like hormone##NM_198966|PTHLH|5744|parathyroid hormone-like hormone##AK313476|PTHLH|5744|parathyroid hormone-like hormone##M26960|PTHLH|5744|parathyroid hormone-like hormone##BC005961|PTHLH|5744|parathyroid hormone-like hormone##M26959|PTHLH|5744|parathyroid hormone-like hormone##NM_002820|PTHLH|5744|parathyroid hormone-like hormone##NM_198965|PTHLH|5744|parathyroid hormone-like hormone	0.966919	0.0	denovo_WM_7:-48:0.747
chr10	94304172	94304317	reg1007391.p1	6.277	+	AK302578 AK093287 AK316407 AX748033 NM_001165946	-46751	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	-253190	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	-253408	-	TSC_hg19_v1_chr10_-_94333800 AB527891 AK312810 BC096336 BC096337 BC096338 BC096339 BC036188	29530	-	TSC_hg19_v1_chr10_-_94333845 M21188	29593	-	TSC_hg19_v1_chr10_-_94333847 NM_004969	29623	-	AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK312810|IDE|3416|insulin-degrading enzyme##BC096336|IDE|3416|insulin-degrading enzyme##BC096337|IDE|3416|insulin-degrading enzyme##BC096338|IDE|3416|insulin-degrading enzyme##BC096339|IDE|3416|insulin-degrading enzyme##BC036188|IDE|3416|insulin-degrading enzyme##M21188|IDE|3416|insulin-degrading enzyme##NM_004969|IDE|3416|insulin-degrading enzyme	0.989958	0.0	denovo_WM_7:-30:0.405	denovo_WM_7:-33:0.330
chr12	14392963	14393123	reg1005149.p2	6.277	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-260057	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-1043314	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-1043326	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	125592	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	145229	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	327566	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.0	0.0	
chr19	49156098	49156195	reg1006103.p2	6.276	+	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	-6795	-	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-15542	-	BC010671 NM_001204160 EF107108 AK125560	-27900	+	BC018654 BC018697 BC033207 NM_145807 BC021210	20127	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	43115	+	AK093389 AX748093 NM_182574 BC106047	64099	-	AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC010671|SPHK2|56848|sphingosine kinase 2##NM_001204160|SPHK2|56848|sphingosine kinase 2##EF107108|SPHK2|56848|sphingosine kinase 2##AK125560|SPHK2|56848|sphingosine kinase 2##BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK093389|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_182574|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##BC106047|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator	1.818211	0.0	denovo_WM_7:-40:0.226	denovo_WM_7:-101:0.226
chr22	18477452	18477632	reg1006455.p1	6.276	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-220208	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-220319	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-220335	-	TSC_hg19_v1_chr22_-_18484268 AK127487	6686	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	29719	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	83146	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.994794	0.0	denovo_WM_7:-44:0.699
chr3	115984778	115984904	reg1006925.p1	6.276	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-642422	+	NM_001130064 NM_002045	-642691	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-1118727	-	AK315286 TSC_hg19_v1_chr3_-_116164338	179490	-	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	179532	-	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2768692	-	AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315286|LSAMP|4045|limbic system-associated membrane protein##BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11	0.026814	0.0	
chr1	12218009	12218166	reg1005476.p2	6.275	+	D86042 BC063482 NM_152942 BC073839 BC141804	-32071	+	M83554 NM_001243 BC136400 BC171762 S75768	-94543	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-138517	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	8974	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	9024	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	72020	+	D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)	0.994256	0.0	
chr1	238169835	238169920	reg1000571.p2	6.275	+	AK314151 NM_021186	-115656	-	NM_001035 X98330 Y08218	-964104	+	TSC_hg19_v1_chr1_+_236958699 U75743 U71285 BC130616 BC136440 BC144095 BC144097 BC144098	-1211042	+	TSC_hg19_v1_chr1_+_239550016 AK056349	1380065	+	AF279779 NM_000740	1622495	+	TSC_hg19_v1_chr1_+_240255182 NM_020066	2085300	+	AK314151|ZP4|57829|zona pellucida glycoprotein 4##NM_021186|ZP4|57829|zona pellucida glycoprotein 4##NM_001035|RYR2|6262|ryanodine receptor 2 (cardiac)##X98330|RYR2|6262|ryanodine receptor 2 (cardiac)##Y08218|RYR2|6262|ryanodine receptor 2 (cardiac)##U75743|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U71285|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC130616|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC136440|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144095|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144097|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144098|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK056349|CHRM3|1131|cholinergic receptor, muscarinic 3##AF279779|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_000740|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_020066|FMN2|56776|formin 2	0.98472	0.0	
chr13	99220181	99220298	reg1006191.p1	6.275	+	AF083420 NM_003576	-45944	-	TSC_hg19_v1_chr13_+_99058147 AF339817	-162033	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-390734	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	8815	-	AF024636 AK297583 AK299140 TSC_hg19_v1_chr13_-_99229127	8883	-	TSC_hg19_v1_chr13_-_99229363 BC035578 BC065378 NM_001032296	9072	-	AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24##AF024636|STK24|8428|serine/threonine kinase 24##AK297583|STK24|8428|serine/threonine kinase 24##AK299140|STK24|8428|serine/threonine kinase 24##BC035578|STK24|8428|serine/threonine kinase 24##BC065378|STK24|8428|serine/threonine kinase 24##NM_001032296|STK24|8428|serine/threonine kinase 24	1.219016	0.0	denovo_WM_7:23:0.622	denovo_WM_7:24:0.362
chr19	16493693	16493845	reg1007040.p2	6.275	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-58000	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-58128	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-185019	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	89007	-	TSC_hg19_v1_chr19_-_16582810 AK291359	89083	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	113201	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.990463	0.0	denovo_WM_7:1:0.457	denovo_WM_7:2:0.457
chr1	208260066	208260245	reg1006273.p1	6.274	+	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	-175598	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	-175772	-	BX640941 TSC_hg19_v1_chr1_-_208059392	-200832	-	TSC_hg19_v1_chr1_-_208417635 NM_025179	157494	-	AK091113 AX746785 NM_001104548	1342010	+	NM_020439 AK095713 AK289675 AF428261 BC032787	1496905	+	BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##NM_025179|PLXNA2|5362|plexin A2##NM_001104548|MIR205HG|642587|MIR205 host gene (non-protein coding)##NM_020439|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK095713|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK289675|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AF428261|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##BC032787|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG	0.990899	0.0	denovo_WM_7:-9:0.237	denovo_WM_7:-10:0.237	denovo_WM_7:-11:0.237	denovo_WM_7:-12:0.237
chr19	6602155	6602335	reg1006819.p2	6.274	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-11087	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-11139	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-11213	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	67879	-	AF064090 NM_003807 NM_172014	68353	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	118411	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.995607	0.0	
chr6	399780	399906	reg1006195.p1	6.274	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	-8079	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-107346	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-107758	+	AF508547 BC101697 BC101699 NM_148959	257110	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	293247	-	BC053850 NM_033260	912831	+	NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1	0.0	0.0	
chr7	148842945	148843073	reg1004690.p1	6.274	+	TSC_hg19_v1_chr7_+_148823499 AY049743 NM_020781	-19507	+	TSC_hg19_v1_chr7_-_148823395 NM_001001661	-19596	-	TSC_hg19_v1_chr7_-_148823339 AK125575 BC125189 AK056498 AY621067	-19672	-	TSC_hg19_v1_chr7_+_148844532 AK026380 NM_170686 BC043295 AK290499	1520	+	TSC_hg19_v1_chr7_+_148844772 AY049744 AB527270 CU692152	1750	+	D30612 TSC_hg19_v1_chr7_+_148892683 NM_003575 AK299280 BC073805 AK316282 AB587508 BC055287 BC041704	49680	+	AY049743|ZNF398|57541|zinc finger protein 398##NM_020781|ZNF398|57541|zinc finger protein 398##NM_001001661|ZNF425|155054|zinc finger protein 425##BC125189|ZNF425|155054|zinc finger protein 425##AK056498|ZNF425|155054|zinc finger protein 425##AY621067|ZNF425|155054|zinc finger protein 425##AK026380|ZNF398|57541|zinc finger protein 398##NM_170686|ZNF398|57541|zinc finger protein 398##BC043295|ZNF398|57541|zinc finger protein 398##AK290499|ZNF398|57541|zinc finger protein 398##AY049744|ZNF398|57541|zinc finger protein 398##D30612|ZNF282|8427|zinc finger protein 282##NM_003575|ZNF282|8427|zinc finger protein 282##AK299280|ZNF282|8427|zinc finger protein 282##BC073805|ZNF282|8427|zinc finger protein 282##AK316282|ZNF282|8427|zinc finger protein 282##BC055287|ZNF282|8427|zinc finger protein 282##BC041704|ZNF282|8427|zinc finger protein 282	0.999034	0.021099	
chr7	151536042	151536215	reg1007545.p1	6.274	+	BC068598 TSC_hg19_v1_chr7_-_151511929 NM_001040633	-24188	-	TSC_hg19_v1_chr7_-_151329284 BT007127 BC020540 AB025580 AF087875 AK314646 AK001887 NM_024429	-206848	-	TSC_hg19_v1_chr7_-_151216982 BC107705 AK125446 BC016155 NM_005614	-319143	-	AK074675 NM_016203	38134	-	NM_145292 AF440404 AK315667 AK093091 AX747915 BC022021 AF440400 BC025391	117370	+	TSC_hg19_v1_chr7_+_151722782 NM_022087	186669	+	BC068598|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_001040633|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BT007127|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC020540|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AB025580|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AF087875|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK314646|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK001887|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_024429|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC107705|RHEB|6009|Ras homolog enriched in brain##AK125446|RHEB|6009|Ras homolog enriched in brain##BC016155|RHEB|6009|Ras homolog enriched in brain##NM_005614|RHEB|6009|Ras homolog enriched in brain##AK074675|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_016203|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_145292|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AF440404|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AK315667|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AK093091|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##BC022021|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##AF440400|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##BC025391|GALNTL5|168391|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5##NM_022087|GALNT11|63917|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	0.994225	0.0	
chr8	102965064	102965221	reg1006092.p2	6.274	+	NM_032041	-161704	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-161942	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-161959	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	171381	-	NM_001040630	171992	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	286031	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	0.985758	0.0	denovo_WM_7:12:0.244	denovo_WM_7:13:0.696
chr12	12158744	12158861	reg1006306.p1	6.273	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	-355816	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	-356028	+	TSC_hg19_v1_chr12_+_11802659 AK289441	-356129	+	AK292995 TSC_hg19_v1_chr12_+_12223872 BC025778 NM_138723 AK223415	65081	+	AF281254 AF281255 NM_030766 NM_138722	65599	+	AK074543 TSC_hg19_v1_chr12_-_12291395	132582	-	U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##AK289441|ETV6|2120|ets variant 6##AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281254|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281255|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_030766|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138722|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK074543|LRP6|4040|low density lipoprotein receptor-related protein 6	0.996888	0.0	
chr17	76691392	76691548	reg1006674.p2	6.273	+	NM_173628	-117995	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-316740	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-335313	-	AK316277 TSC_hg19_v1_chr17_-_76719649	28177	-	TSC_hg19_v1_chr17_-_76719676 AK293894	28281	-	TSC_hg19_v1_chr17_-_76732958 AK311535	41528	-	NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	0.0	0.0	
chr2	208153445	208153562	reg1006941.p1	6.273	+	BC012919 TSC_hg19_v1_chr2_-_208031680	-121878	-	AB015132 NM_003709 TSC_hg19_v1_chr2_-_208030685 AK314439	-122847	-	BC112076 BC112078 NM_173077 AJ422118	-349203	+	NM_004379 NM_134442 TSC_hg19_v1_chr2_+_208394671 BC095407	241140	+	TSC_hg19_v1_chr2_+_208394709 X55545 M27691	241218	+	TSC_hg19_v1_chr2_+_208394772 BC010636 AK298740	241278	+	BC012919|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AB015132|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_003709|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AK314439|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##BC112076|CPO|130749|carboxypeptidase O##BC112078|CPO|130749|carboxypeptidase O##NM_173077|CPO|130749|carboxypeptidase O##AJ422118|CPO|130749|carboxypeptidase O##NM_004379|CREB1|1385|cAMP responsive element binding protein 1##NM_134442|CREB1|1385|cAMP responsive element binding protein 1##BC095407|CREB1|1385|cAMP responsive element binding protein 1##X55545|CREB1|1385|cAMP responsive element binding protein 1##M27691|CREB1|1385|cAMP responsive element binding protein 1##BC010636|CREB1|1385|cAMP responsive element binding protein 1##AK298740|CREB1|1385|cAMP responsive element binding protein 1	0.939965	0.0	denovo_WM_7:-31:0.704
chr2	225808364	225808495	reg1005968.p1	6.272	+	TSC_hg19_v1_chr2_-_225450116 NM_003590	-358309	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-358354	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	-358388	-	TSC_hg19_v1_chr2_-_225811768 EU236710	3325	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	98919	-	NM_020864 BC131727 AB040919	457216	+	NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##EU236710|DOCK10|55619|dedicator of cytokinesis 10##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	1.982176	0.0	denovo_WM_7:40:0.499	denovo_WM_7:43:0.279	denovo_WM_7:61:0.208
chr2	32414952	32415069	reg1006372.p2	6.272	+	TSC_hg19_v1_chr2_+_32390932 NM_001193513 NM_001193514 NM_001193515 NM_017964 AK055663 AK096672 AK127716 AK304225 BC066903 EF560719 EF560726 AL832755 AF173387	-24081	+	TSC_hg19_v1_chr2_+_32288665 AB029006 BC150260 NM_014946 NM_199436 AJ246001	-126310	+	TSC_hg19_v1_chr2_-_32264863 AF226998 NM_032574 AK295755 BC015970	-150142	-	AY358152 BC031555 AK292673 AK314762 AK095467 NM_001199138	74919	-	AY035391 NM_001199139 AY027787 AY027788 AY027789 AY027790 NM_021209 AF376061	75795	-	TSC_hg19_v1_chr2_+_32502966 NM_032312	87952	+	NM_001193513|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193514|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193515|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_017964|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK055663|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK096672|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK127716|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK304225|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##BC066903|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560719|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560726|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AL832755|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AF173387|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AB029006|SPAST|6683|spastin##BC150260|SPAST|6683|spastin##NM_014946|SPAST|6683|spastin##NM_199436|SPAST|6683|spastin##AJ246001|SPAST|6683|spastin##AF226998|DPY30|84661|dpy-30 homolog (C. elegans)##NM_032574|DPY30|84661|dpy-30 homolog (C. elegans)##BC015970|DPY30|84661|dpy-30 homolog (C. elegans)##AY358152|NLRC4|58484|NLR family, CARD domain containing 4##BC031555|NLRC4|58484|NLR family, CARD domain containing 4##AK292673|NLRC4|58484|NLR family, CARD domain containing 4##AK314762|NLRC4|58484|NLR family, CARD domain containing 4##AK095467|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199138|NLRC4|58484|NLR family, CARD domain containing 4##AY035391|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199139|NLRC4|58484|NLR family, CARD domain containing 4##AY027787|NLRC4|58484|NLR family, CARD domain containing 4##AY027788|NLRC4|58484|NLR family, CARD domain containing 4##AY027789|NLRC4|58484|NLR family, CARD domain containing 4##AY027790|NLRC4|58484|NLR family, CARD domain containing 4##NM_021209|NLRC4|58484|NLR family, CARD domain containing 4##AF376061|NLRC4|58484|NLR family, CARD domain containing 4##NM_032312|YIPF4|84272|Yip1 domain family, member 4	0.0	0.0	
chr1	46813899	46814026	reg1007250.p1	6.270	+	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	-7519	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-44575	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-44914	-	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	46014	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	158710	+	NM_001097611	202924	-	NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_001097611|KNCN|148930|kinocilin	0.0	1.042263	CTCF.p2:11:0.269	CTCF.p2:-14:0.749
chr2	20187761	20187883	reg1003247.p2	6.270	+	CU691276 BC070381 TSC_hg19_v1_chr2_-_20101717 BC057850 NM_001008237	-86141	-	TSC_hg19_v1_chr2_-_20101456 BC050088	-86394	-	AK022396 BC068572 TSC_hg19_v1_chr2_+_20068650 AK097927	-119187	+	AB385451 AK122917 AK315094 BC036659 NM_001006657 NM_020779 AB037757 TSC_hg19_v1_chr2_-_20189911	2021	-	AJ224741 BC139907 TSC_hg19_v1_chr2_-_20212430 EU541440	24598	-	TSC_hg19_v1_chr2_-_20212456 AK290856 NM_002381	24643	-	BC070381|TTC32|130502|tetratricopeptide repeat domain 32##BC057850|TTC32|130502|tetratricopeptide repeat domain 32##NM_001008237|TTC32|130502|tetratricopeptide repeat domain 32##AK022396|FLJ12334|400946|uncharacterized LOC400946##BC068572|FLJ12334|400946|uncharacterized LOC400946##AK097927|FLJ12334|400946|uncharacterized LOC400946##AK122917|WDR35|57539|WD repeat domain 35##AK315094|WDR35|57539|WD repeat domain 35##BC036659|WDR35|57539|WD repeat domain 35##NM_001006657|WDR35|57539|WD repeat domain 35##NM_020779|WDR35|57539|WD repeat domain 35##AB037757|WDR35|57539|WD repeat domain 35##AJ224741|MATN3|4148|matrilin 3##BC139907|MATN3|4148|matrilin 3##EU541440|MATN3|4148|matrilin 3##AK290856|MATN3|4148|matrilin 3##NM_002381|MATN3|4148|matrilin 3	0.0	0.072431	
chr8	26466973	26467120	reg1007068.p1	6.270	+	NM_001244604 TSC_hg19_v1_chr8_+_26435921 AK299077	-31119	+	TSC_hg19_v1_chr8_+_26435604 U17279 AB370194 AB590733 BT006944 CU691152	-31366	+	TSC_hg19_v1_chr8_+_26435468 AK223557 BC056408 D78013 BC010880 AK291287	-31519	+	U02569 AY491775 AY491776 AY491777 AY491778 AY491779 AY491780 AY491781 D25235 D32201 D32202 NM_000680 NM_033302 NM_033303 NM_033304	255872	-	AK311558 TSC_hg19_v1_chr8_-_26724735	257688	-	TSC_hg19_v1_chr8_-_26724764 AK289548	257712	-	NM_001244604|DPYSL2|1808|dihydropyrimidinase-like 2##AK299077|DPYSL2|1808|dihydropyrimidinase-like 2##U17279|DPYSL2|1808|dihydropyrimidinase-like 2##AB370194|DPYSL2|1808|dihydropyrimidinase-like 2##AK223557|DPYSL2|1808|dihydropyrimidinase-like 2##BC056408|DPYSL2|1808|dihydropyrimidinase-like 2##D78013|DPYSL2|1808|dihydropyrimidinase-like 2##AK291287|DPYSL2|1808|dihydropyrimidinase-like 2##U02569|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491775|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491776|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491777|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491778|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491780|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491781|ADRA1A|148|adrenergic, alpha-1A-, receptor##D25235|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32201|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32202|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_000680|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033302|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033303|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033304|ADRA1A|148|adrenergic, alpha-1A-, receptor##AK289548|ADRA1A|148|adrenergic, alpha-1A-, receptor	0.0	0.0	
chr10	116257437	116257564	reg1006566.p2	6.269	+	CU677968 TSC_hg19_v1_chr10_-_116251632	-5893	-	BC024314 NM_001001936 NM_032550	-92986	-	AK123108 BC033212 AK027470 TSC_hg19_v1_chr10_-_116164254 AK294969 AK291712 AF474151	-93258	-	TSC_hg19_v1_chr10_-_116286631 AK298709 BC002448	29102	-	TSC_hg19_v1_chr10_-_116286673 CR749819 NM_006720 AK098277	29179	-	AK297344 TSC_hg19_v1_chr10_-_116392101	134600	-	BC024314|AFAP1L2|84632|actin filament associated protein 1-like 2##NM_001001936|AFAP1L2|84632|actin filament associated protein 1-like 2##NM_032550|AFAP1L2|84632|actin filament associated protein 1-like 2##AK123108|AFAP1L2|84632|actin filament associated protein 1-like 2##BC033212|AFAP1L2|84632|actin filament associated protein 1-like 2##AK294969|AFAP1L2|84632|actin filament associated protein 1-like 2##AK291712|AFAP1L2|84632|actin filament associated protein 1-like 2##AF474151|AFAP1L2|84632|actin filament associated protein 1-like 2##AK298709|ABLIM1|3983|actin binding LIM protein 1##BC002448|ABLIM1|3983|actin binding LIM protein 1##CR749819|ABLIM1|3983|actin binding LIM protein 1##NM_006720|ABLIM1|3983|actin binding LIM protein 1##AK098277|ABLIM1|3983|actin binding LIM protein 1##AK297344|ABLIM1|3983|actin binding LIM protein 1	0.997621	0.0	
chr10	93971925	93972068	reg1001797.p4	6.269	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-288304	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-288480	+	AK315427 BC025966 AK075410 NM_152429	-302776	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	31023	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	78840	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	79058	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.99033	0.0	denovo_WM_7:-17:0.237	denovo_WM_7:-18:0.237	denovo_WM_7:-19:0.237	denovo_WM_7:-20:0.237
chr9	125932328	125932438	reg1005174.p1	6.269	+	TSC_hg19_v1_chr9_-_125874882 AK025814	-57484	-	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-135538	+	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	-136516	+	TSC_hg19_v1_chr9_-_125941308 BC002693	8937	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	98437	-	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	98505	-	AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein	0.989103	0.0	denovo_WM_7:3:0.832
chr15	101488647	101488804	reg1007309.p2	6.268	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-29213	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-29251	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-68654	+	AB071402 TSC_hg19_v1_chr15_-_101791795	303011	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	303410	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	328938	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.0	0.0	
chr20	48421553	48421733	reg1004507.p1	6.268	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-91177	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-91287	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-91413	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	7665	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	7775	+	AK289644 NM_001135773	108632	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	1.062983	0.0	
chr7	77372747	77372873	reg1006637.p1	6.268	+	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	-47053	+	TSC_hg19_v1_chr7_-_77325573 BC037783	-47249	-	AK303602 NM_001131008 NM_001131009 AK296764	-205442	+	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	54858	-	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	54937	-	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	55331	+	NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##AK303602|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131009|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK296764|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2	1.65702	0.0	denovo_WM_7:-20:0.254	denovo_WM_7:-22:0.201	denovo_WM_7:-23:0.311	denovo_WM_7:-48:0.483
chr14	50502146	50502268	reg1005802.p2	6.267	+	AK091232 AX746864 NM_001012706	-27970	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-141801	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-142374	+	AF390030 NM_001014830	57153	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	81063	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	195776	-	AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)	2.528355	0.0	denovo_WM_7:39:0.470	denovo_WM_7:54:0.461	denovo_WM_7:69:0.577
chr3	133296110	133296238	reg1006764.p2	6.267	+	TSC_hg19_v1_chr3_+_133293256 AK096865 NM_001134423	-2896	+	TSC_hg19_v1_chr3_+_133292835 BC007338	-3380	+	TSC_hg19_v1_chr3_+_133292588 AF103803	-3602	+	BC126209 TSC_hg19_v1_chr3_-_133380768 AB019397 BC151237 D87448 AK302584 BC032633 NM_007027	84524	-	AJ252279 NM_001063 TSC_hg19_v1_chr3_+_133465083	168809	+	BC045772 TSC_hg19_v1_chr3_+_133465111	168937	+	AK096865|CDV3|55573|CDV3 homolog (mouse)##NM_001134423|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC126209|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AB019397|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##BC151237|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##D87448|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AK302584|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##BC032633|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##NM_007027|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AJ252279|TF|7018|transferrin##NM_001063|TF|7018|transferrin##BC045772|TF|7018|transferrin	0.987884	0.0	denovo_WM_7:37:0.511	denovo_WM_7:40:0.340
chr10	114150002	114150116	reg1007064.p1	6.266	+	TSC_hg19_v1_chr10_+_114136043 AB033899	-13980	+	TSC_hg19_v1_chr10_+_114135984 AK223288 BC007985 AY358520	-14071	+	AK222782 TSC_hg19_v1_chr10_+_114135962 NM_016234 AK024932	-14110	+	TSC_hg19_v1_chr10_+_114154539 AM262166 DQ893266 DQ896596	4554	+	TSC_hg19_v1_chr10_-_114206706 BX647270 BC007213 BC017434 AF267740 AK223086 AK025605 NM_022494	56629	-	TSC_hg19_v1_chr10_+_114206756 AK095476 NM_145206 BC064614	56705	+	AB033899|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK223288|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##BC007985|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AY358520|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK222782|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_016234|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK024932|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AM262166|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##DQ893266|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##DQ896596|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##BX647270|ZDHHC6|64429|zinc finger, DHHC-type containing 6##BC007213|ZDHHC6|64429|zinc finger, DHHC-type containing 6##BC017434|ZDHHC6|64429|zinc finger, DHHC-type containing 6##AF267740|ZDHHC6|64429|zinc finger, DHHC-type containing 6##AK223086|ZDHHC6|64429|zinc finger, DHHC-type containing 6##AK025605|ZDHHC6|64429|zinc finger, DHHC-type containing 6##NM_022494|ZDHHC6|64429|zinc finger, DHHC-type containing 6##NM_145206|VTI1A|143187|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	0.0	0.0	
chr7	100751580	100751728	reg1005157.p1	6.266	+	BC005847 TSC_hg19_v1_chr7_+_100728767 AK092927 AX747810 BC048194 NM_030961 BC011882	-22894	+	TSC_hg19_v1_chr7_+_100663360 AJ606307 AJ606308 NM_001040105	-88289	+	NM_001164462	-138751	+	NM_000602 NM_001165413 TSC_hg19_v1_chr7_+_100770384 AK293248 AK297728 AK298048 AK316225 BC020765 X04729 BC010860 X04429 X12701 BC005927 M16006	18760	+	NM_001283 TSC_hg19_v1_chr7_+_100797756 AK312151 BC003561 AB015319	46074	+	BC063835 BC044212 TSC_hg19_v1_chr7_-_100808851 AK225839 NM_003378 BC036537	57198	-	BC005847|TRIM56|81844|tripartite motif containing 56##BC048194|TRIM56|81844|tripartite motif containing 56##NM_030961|TRIM56|81844|tripartite motif containing 56##BC011882|TRIM56|81844|tripartite motif containing 56##AJ606307|MUC17|140453|mucin 17, cell surface associated##AJ606308|MUC17|140453|mucin 17, cell surface associated##NM_001040105|MUC17|140453|mucin 17, cell surface associated##NM_001164462|MUC12|10071|mucin 12, cell surface associated##NM_000602|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001165413|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK293248|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK297728|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK298048|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK316225|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC020765|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04729|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC010860|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04429|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X12701|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005927|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##M16006|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001283|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AK312151|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC003561|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AB015319|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC063835|VGF|7425|VGF nerve growth factor inducible##BC044212|VGF|7425|VGF nerve growth factor inducible##AK225839|VGF|7425|VGF nerve growth factor inducible##NM_003378|VGF|7425|VGF nerve growth factor inducible##BC036537|VGF|7425|VGF nerve growth factor inducible	0.995758	0.0	
chrX	1401076	1401204	reg1006979.p1	6.266	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-13426	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-69556	-	NM_000451 NM_006883 U89331	-816062	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	443	+	BC035407 NM_002183	54368	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	109829	-	NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	1.270563	0.0	denovo_WM_7:-6:0.275	denovo_WM_7:-32:0.507	denovo_WM_7:-33:0.245	denovo_WM_7:-34:0.245
chr2	197134179	197134321	reg1006629.p1	6.265	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-97932	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-97971	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-200755	-	BC117194 BC117198 AB037722 NM_020760	323042	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	370107	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	530163	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	1.137373	0.0	denovo_WM_7:-21:0.217
chr20	44415803	44415920	reg1007166.p1	6.264	+	AY372173 AY372174 NM_178455	-64874	+	BC121071 BC121072 AF454506 AF454507 NM_172006 NM_172131	-82205	-	AF454505 NM_172005	-85207	+	BC026014 BC102013 BC102014 AF488306 NM_080614	4681	-	NM_052951 TSC_hg19_v1_chr20_+_44420592 AB035676	4729	+	AK314003 TSC_hg19_v1_chr20_+_44420609	4746	+	AY372173|SPINT4|391253|serine peptidase inhibitor, Kunitz type 4##AY372174|SPINT4|391253|serine peptidase inhibitor, Kunitz type 4##NM_178455|SPINT4|391253|serine peptidase inhibitor, Kunitz type 4##BC121071|WFDC10B|280664|WAP four-disulfide core domain 10B##BC121072|WFDC10B|280664|WAP four-disulfide core domain 10B##AF454506|WFDC10B|280664|WAP four-disulfide core domain 10B##AF454507|WFDC10B|280664|WAP four-disulfide core domain 10B##NM_172006|WFDC10B|280664|WAP four-disulfide core domain 10B##NM_172131|WFDC10B|280664|WAP four-disulfide core domain 10B##AF454505|WFDC13|164237|WAP four-disulfide core domain 13##NM_172005|WFDC13|164237|WAP four-disulfide core domain 13##BC026014|WFDC3|140686|WAP four-disulfide core domain 3##BC102013|WFDC3|140686|WAP four-disulfide core domain 3##BC102014|WFDC3|140686|WAP four-disulfide core domain 3##AF488306|WFDC3|140686|WAP four-disulfide core domain 3##NM_080614|WFDC3|140686|WAP four-disulfide core domain 3##NM_052951|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1##AB035676|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1##AK314003|DNTTIP1|116092|deoxynucleotidyltransferase, terminal, interacting protein 1	2.968584	0.0	denovo_WM_7:-38:0.414	denovo_WM_7:-39:0.308	denovo_WM_7:-40:0.248	denovo_WM_7:62:0.815	denovo_WM_7:77:0.449	denovo_WM_7:78:0.465
chr3	194973410	194973565	reg1006327.p1	6.264	+	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-565984	+	TSC_hg19_v1_chr3_+_194406619 NM_153690	-566864	+	NM_018385	-580282	-	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	18363	-	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	190215	-	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	296626	-	BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##NM_018385|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2	0.906596	0.0	denovo_WM_7:-75:0.869
chr6	74289757	74289898	reg1007459.p1	6.264	+	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-59081	-	TSC_hg19_v1_chr6_-_74230163 AY043301	-59657	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	-60658	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	73803	-	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	73953	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	115738	+	BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule	0.990412	0.0	denovo_WM_7:-1:0.776
chr9	87324677	87324838	reg1006832.p1	6.264	+	U12140 TSC_hg19_v1_chr9_+_87285349	-39425	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-40005	+	TSC_hg19_v1_chr9_+_87284681 AF410899 AF410900 AF410901	-40061	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	1032114	-	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	1231317	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	1231421	+	U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410899|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410900|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410901|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	0.0	0.0	
chr7	7745761	7745922	reg1006128.p1	6.263	+	TSC_hg19_v1_chr7_+_7680382 AK295253	-65468	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-65754	-	TSC_hg19_v1_chr7_+_7606667 AK294561	-139155	+	BC009868 NM_002947	12396	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	262592	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	555875	-	AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##AK294561|MIOS|54468|missing oocyte, meiosis regulator, homolog (Drosophila)##BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chr9	139941182	139941307	reg1006871.p1	6.263	+	TSC_hg19_v1_chr9_-_139940630 AF327349 AK074793 AF285836 NM_015392	-605	-	TSC_hg19_v1_chr9_-_139940559 BC004217	-682	-	TSC_hg19_v1_chr9_-_139940543 AK225091 AF272357	-735	-	AF144748 EF495152 CU690182 DQ892410 DQ895623 U91510 BC035738 NM_001246 NM_203468	7231	-	TSC_hg19_v1_chr9_-_139965024 BC048267 NM_178448 DQ150361	23789	-	TSC_hg19_v1_chr9_+_139971968 NM_207309	30709	+	AF327349|NPDC1|56654|neural proliferation, differentiation and control, 1##AK074793|NPDC1|56654|neural proliferation, differentiation and control, 1##AF285836|NPDC1|56654|neural proliferation, differentiation and control, 1##NM_015392|NPDC1|56654|neural proliferation, differentiation and control, 1##BC004217|NPDC1|56654|neural proliferation, differentiation and control, 1##AK225091|NPDC1|56654|neural proliferation, differentiation and control, 1##AF272357|NPDC1|56654|neural proliferation, differentiation and control, 1##AF144748|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##EF495152|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ892410|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ895623|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##U91510|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##BC035738|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_001246|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_203468|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##BC048267|C9orf140|89958|chromosome 9 open reading frame 140##NM_178448|C9orf140|89958|chromosome 9 open reading frame 140##DQ150361|C9orf140|89958|chromosome 9 open reading frame 140##NM_207309|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	0.998425	0.969182	denovo_WM_7:28:0.721	CTCF.p2:-86:0.969
chr10	51811705	51811885	reg1006488.p1	6.262	+	NM_001077665	-63718	+	CU687598 CU688220 AK304883 AK223331 BC066951 NM_006327 TSC_hg19_v1_chr10_-_51623335 AF030162 AY442341 BC062707	-188496	-	AK292480 NM_001145262	-235511	+	TSC_hg19_v1_chr10_+_51827685 BC150611 AK001686 NM_001005751 AK295129	15885	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	15927	+	NM_018232	26090	+	NM_001077665|AGAP6|414189|ArfGAP with GTPase domain, ankyrin repeat and PH domain 6##AK304883|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AK223331|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##BC066951|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##NM_006327|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AF030162|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AY442341|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##BC062707|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AK292480|NCOA4|8031|nuclear receptor coactivator 4##NM_001145262|NCOA4|8031|nuclear receptor coactivator 4##BC150611|FAM21C|253725|family with sequence similarity 21, member C##AK001686|FAM21A|387680|family with sequence similarity 21, member A##NM_001005751|FAM21A|387680|family with sequence similarity 21, member A##AK295129|FAM21A|387680|family with sequence similarity 21, member A##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##NM_018232|FAM21B|55747|family with sequence similarity 21, member B	0.999409	0.0	denovo_WM_7:-12:0.848
chr15	89601018	89601114	reg1001509.p2	6.262	+	BC003610 AK095908 AK222735 AK223182 AK304627 AK310357 AK312640 U58516 AY141974 TSC_hg19_v1_chr15_-_89456611 NM_001114614 NM_005928	-144427	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	-144506	-	AY358500 AY037161 TSC_hg19_v1_chr15_-_89438761 BC053689 AY262759 NM_178232 AK292055 BC062320 AK292103	-162268	-	NM_007011 NM_152924	30314	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	30582	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	30637	+	BC003610|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK095908|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK222735|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK223182|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK304627|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK310357|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK312640|MFGE8|4240|milk fat globule-EGF factor 8 protein##U58516|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY141974|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_001114614|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_005928|MFGE8|4240|milk fat globule-EGF factor 8 protein##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY358500|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY037161|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC053689|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY262759|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_178232|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292055|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC062320|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292103|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_007011|ABHD2|11057|abhydrolase domain containing 2##NM_152924|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2	0.984873	0.01525	denovo_WM_7:-53:0.569
chr5	55360943	55361089	reg1006476.p1	6.262	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-70253	-	NM_001242636 NM_001242639	-211867	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-213747	+	AK123389 NM_024669	168169	-	NM_005921	749883	+	TSC_hg19_v1_chr5_+_56111375 AK307828	750348	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.999227	0.0	denovo_WM_7:-45:0.886
chr8	17995620	17995708	reg1008045.p2	6.262	+	TSC_hg19_v1_chr8_-_17942455 AK025732 BC016828 NM_001127505 NM_004315	-53206	-	TSC_hg19_v1_chr8_-_17942339 CU677731 AY305384	-53336	-	TSC_hg19_v1_chr8_-_17941617 AK289481 NM_177924	-53917	-	NM_001160179	32306	+	AJ581152 NM_000662 NM_001160170 NM_001160171 NM_001160172 NM_001160173 NM_001160175 NM_001160176 BC047666 BX647521 BC013732 AJ581135 TSC_hg19_v1_chr8_+_18067655	71970	+	AJ581141 NM_001160174	83512	+	AK025732|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##BC016828|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##NM_001127505|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##NM_004315|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##AY305384|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##AK289481|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##NM_177924|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##NM_001160179|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##AJ581152|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_000662|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160170|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160171|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160172|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160173|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160175|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160176|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##BC047666|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##BX647521|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##BC013732|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##AJ581135|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##AJ581141|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)##NM_001160174|NAT1|9|N-acetyltransferase 1 (arylamine N-acetyltransferase)	0.988865	0.0	denovo_WM_7:24:0.327	denovo_WM_7:27:0.517
chr12	111000098	111000278	reg1006511.p1	6.261	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-60113	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-60278	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-93519	+	TSC_hg19_v1_chr12_-_111020755 AY357944	20605	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	20882	-	AK124744 TSC_hg19_v1_chr12_-_111021124	20938	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	1.990658	0.0	denovo_WM_7:-73:0.955	denovo_WM_7:-88:0.973
chr2	37879344	37879463	reg1005661.p1	6.261	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-307590	+	BC030706 BC012820 AB015982 NM_005813	-335210	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-420557	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	19376	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	19986	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	273029	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	1.993266	0.0	denovo_WM_7:-61:0.959	denovo_WM_7:-76:0.320	denovo_WM_7:-77:0.332	denovo_WM_7:-78:0.345
chr3	130785674	130785787	reg1006196.p1	6.261	+	AK297300 NM_001146003 NM_024800 NM_145910 AK123021 AL833472 AB071996 AB071997 BC026195 AK293261 AK316352	-39995	+	AK301388 BC069265 AK027806 NM_014065 AK294156	-40090	-	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	-172585	+	TSC_hg19_v1_chr3_+_131080714 AK297126	294968	+	TSC_hg19_v1_chr3_+_131080737 AK000532 BC015593	295013	+	NM_001171905 TSC_hg19_v1_chr3_+_131100637 NM_001171906 NM_152395 BC031215 AK295852 AK304650 BC009546 AK055827	314921	+	AK297300|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##NM_001146003|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##NM_024800|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##NM_145910|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK123021|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AL833472|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AB071996|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AB071997|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##BC026195|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK293261|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK316352|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK301388|ASTE1|28990|asteroid homolog 1 (Drosophila)##BC069265|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK027806|ASTE1|28990|asteroid homolog 1 (Drosophila)##NM_014065|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK294156|ASTE1|28990|asteroid homolog 1 (Drosophila)##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK297126|NUDT16P1|152195|nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1##AK000532|NUDT16P1|152195|nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1##BC015593|NUDT16P1|152195|nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1##NM_001171905|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##NM_001171906|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##NM_152395|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##BC031215|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK295852|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK304650|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##BC009546|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16##AK055827|NUDT16|131870|nudix (nucleoside diphosphate linked moiety X)-type motif 16	1.309161	0.0	denovo_WM_7:-22:0.326	denovo_WM_7:-37:0.318	denovo_WM_7:-38:0.326
chr8	90701534	90701671	reg1004795.p1	6.261	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1361856	-	BC035011 AL833507 BC111778 AK093094 AX747918 NM_152418	-1815343	-	AK093121 AX747937 BC117326 BC117328 NM_173538	-2822929	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	68428	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	68682	+	AF061326 NM_004337	212493	+	AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##BC035011|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AL833507|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##BC111778|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093094|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##NM_152418|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093121|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117326|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117328|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_173538|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2	0.0	0.248178	CTCF.p2:-20:0.248
chr3	64336822	64336925	reg1004982.p1	6.260	+	BC119002 AL833539 NM_198859	-125753	-	AF530062 AB463196 TSC_hg19_v1_chr3_-_64009149 BC000630 AK095059 AY568086 D14663 NM_014814 BC012369 BC000904 AK290205 BX647742 AF215935	-327723	-	NM_001128149 AK310745 AK304062	-383416	+	AK057923 TSC_hg19_v1_chr3_+_64670789 BC040632	333918	+	AB037733 TSC_hg19_v1_chr3_-_64672299	335422	-	TSC_hg19_v1_chr3_-_64673334 AF261918 BC130578 BC171764 AF488803 NM_182920	336474	-	BC119002|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AL833539|PRICKLE2|166336|prickle homolog 2 (Drosophila)##NM_198859|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AF530062|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000630|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK095059|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AY568086|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##D14663|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_014814|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC012369|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000904|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK290205|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BX647742|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AF215935|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_001128149|ATXN7|6314|ataxin 7##AK310745|ATXN7|6314|ataxin 7##AK304062|ATXN7|6314|ataxin 7##AK057923|ADAMTS9-AS2|100507098|ADAMTS9 antisense RNA 2 (non-protein coding)##BC040632|ADAMTS9-AS2|100507098|ADAMTS9 antisense RNA 2 (non-protein coding)##AB037733|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##AF261918|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##BC130578|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##BC171764|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##AF488803|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##NM_182920|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9	0.999887	0.0	
chr9	33227142	33227251	reg1006773.p2	6.260	+	NM_001497 TSC_hg19_v1_chr9_-_33167361	-59835	-	TSC_hg19_v1_chr9_-_33167335 BC045773	-59870	-	D29805 X13223 X14085 M22921 U10474 TSC_hg19_v1_chr9_-_33167262	-59949	-	TSC_hg19_v1_chr9_+_33240166 AF048700 BC110068 NM_014471	12984	+	AM392568 BC014774 TSC_hg19_v1_chr9_-_33264707 AK096038 AK316577 AF116273 BC002407 AK222749 AF022224 U46917 BC001936 Z35491 NM_001172415 NM_004323	37412	-	NM_001195536 NM_016410 TSC_hg19_v1_chr9_+_33265035 BC016698 BC007457 AK315455 AK024753 BC018603 BC021168 AK295744	37760	+	NM_001497|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##BC045773|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##D29805|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X13223|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X14085|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##M22921|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##U10474|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AF048700|SPINK4|27290|serine peptidase inhibitor, Kazal type 4##BC110068|SPINK4|27290|serine peptidase inhibitor, Kazal type 4##NM_014471|SPINK4|27290|serine peptidase inhibitor, Kazal type 4##AM392568|BAG1|573|BCL2-associated athanogene##BC014774|BAG1|573|BCL2-associated athanogene##AK096038|BAG1|573|BCL2-associated athanogene##AK316577|BAG1|573|BCL2-associated athanogene##AF116273|BAG1|573|BCL2-associated athanogene##AK222749|BAG1|573|BCL2-associated athanogene##AF022224|BAG1|573|BCL2-associated athanogene##U46917|BAG1|573|BCL2-associated athanogene##BC001936|BAG1|573|BCL2-associated athanogene##Z35491|BAG1|573|BCL2-associated athanogene##NM_001172415|BAG1|573|BCL2-associated athanogene##NM_004323|BAG1|573|BCL2-associated athanogene##NM_001195536|CHMP5|51510|charged multivesicular body protein 5##NM_016410|CHMP5|51510|charged multivesicular body protein 5##BC016698|CHMP5|51510|charged multivesicular body protein 5##BC007457|CHMP5|51510|charged multivesicular body protein 5##AK315455|CHMP5|51510|charged multivesicular body protein 5##AK024753|CHMP5|51510|charged multivesicular body protein 5##BC018603|CHMP5|51510|charged multivesicular body protein 5##BC021168|CHMP5|51510|charged multivesicular body protein 5##AK295744|CHMP5|51510|charged multivesicular body protein 5	0.907939	0.0	denovo_WM_7:18:0.274	denovo_WM_7:19:0.321
chr1	14020566	14020710	reg1006659.p2	6.259	+	NM_001006624 NM_001006625	-108672	+	NM_006474 NM_198389 BC014668 BC022812 TSC_hg19_v1_chr1_+_13910326 AY194238 AK075327 AK075345 AK312607 AF390106 AF030428 AJ225022 AB127958	-110249	+	BC016048 NM_001010847	-180439	-	TSC_hg19_v1_chr1_+_14026688 BC014468 NM_001135610	6086	+	NM_012231 NM_015866 U17838	10711	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	55247	+	NM_001006624|PDPN|10630|podoplanin##NM_001006625|PDPN|10630|podoplanin##NM_006474|PDPN|10630|podoplanin##NM_198389|PDPN|10630|podoplanin##BC014668|PDPN|10630|podoplanin##BC022812|PDPN|10630|podoplanin##AY194238|PDPN|10630|podoplanin##AK075327|PDPN|10630|podoplanin##AK075345|PDPN|10630|podoplanin##AK312607|PDPN|10630|podoplanin##AF390106|PDPN|10630|podoplanin##AF030428|PDPN|10630|podoplanin##AJ225022|PDPN|10630|podoplanin##AB127958|PDPN|10630|podoplanin##BC016048|LRRC38|126755|leucine rich repeat containing 38##NM_001010847|LRRC38|126755|leucine rich repeat containing 38##BC014468|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001135610|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain##U17838|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain	1.994168	0.0	denovo_WM_7:9:0.249	denovo_WM_7:10:0.213	denovo_WM_7:29:0.214	denovo_WM_7:30:0.249
chr1	200379710	200379841	reg1007165.p2	6.259	+	BC060820 NM_012482 TSC_hg19_v1_chr1_-_200379187 AK027284	-581	-	TSC_hg19_v1_chr1_-_200379155 AK297233 AK022916 AK094701	-658	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	-866	-	TSC_hg19_v1_chr1_-_200589869 D26361 NM_014875	210104	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	259254	-	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	259333	-	BC060820|ZNF281|23528|zinc finger protein 281##NM_012482|ZNF281|23528|zinc finger protein 281##AK027284|ZNF281|23528|zinc finger protein 281##AK297233|ZNF281|23528|zinc finger protein 281##AK022916|ZNF281|23528|zinc finger protein 281##AK094701|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281##D26361|KIF14|9928|kinesin family member 14##NM_014875|KIF14|9928|kinesin family member 14##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	1.147872	0.0	denovo_WM_7:14:0.547
chr2	197015862	197016014	reg1003234.p3	6.259	+	AB463018 AF327442 AK094515 NM_018897 AB023161	-82443	-	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	-494030	+	BC029413 NM_001127257 CR749813	-494363	+	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	20341	-	TSC_hg19_v1_chr2_-_197036310 NM_004226	20380	-	BC117194 BC117198 AB037722 NM_020760	441354	-	AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##NM_004226|STK17B|9262|serine/threonine kinase 17b##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	0.291565	0.0	denovo_WM_7:43:0.202
chr4	177414320	177414424	reg1004360.p1	6.259	+	TSC_hg19_v1_chr4_-_177241652 AK096223	-172741	-	TSC_hg19_v1_chr4_+_177241122 AK026302 AL136660 AY359044 BC043490 BC053883 BC047290 CU690386 EU831652 EU831735	-173204	+	TSC_hg19_v1_chr4_+_177241098 NM_021928	-173319	+	AK313879 BC035212 U58111 X94216 U43142 BC063685 NM_005429 TSC_hg19_v1_chr4_-_177713956	299438	-	TSC_hg19_v1_chr4_+_178231006 NM_018248	816621	+	TSC_hg19_v1_chr4_+_178231027 AK001720 BC025954 AK307692 AB079071	816688	+	AK026302|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AL136660|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AY359044|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC043490|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC053883|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC047290|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831652|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831735|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##NM_021928|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AK313879|VEGFC|7424|vascular endothelial growth factor C##BC035212|VEGFC|7424|vascular endothelial growth factor C##U58111|VEGFC|7424|vascular endothelial growth factor C##X94216|VEGFC|7424|vascular endothelial growth factor C##U43142|VEGFC|7424|vascular endothelial growth factor C##BC063685|VEGFC|7424|vascular endothelial growth factor C##NM_005429|VEGFC|7424|vascular endothelial growth factor C##NM_018248|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##AK001720|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##BC025954|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##AK307692|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)##AB079071|NEIL3|55247|nei endonuclease VIII-like 3 (E. coli)	0.726154	0.0	denovo_WM_7:21:0.384	denovo_WM_7:22:0.342
chrY	1351066	1351189	reg1006980.p1	6.259	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-13413	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-69543	-	NM_000451 NM_006883 U89331	-816049	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	456	+	BC035407 NM_002183	54381	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	109842	-	NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	1.270563	0.0	denovo_WM_7:6:0.275	denovo_WM_7:-19:0.507	denovo_WM_7:-20:0.245	denovo_WM_7:-21:0.245
chrX	118820151	118820289	reg1006410.p1	6.258	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-80392	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-93238	-	BC042021 NM_181777	-105923	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	6865	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	6912	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	6959	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.0	0.0	
chr3	20366628	20366781	reg1008169.p1	6.257	+	AB193056 AB193057 AB193058 AB193059 AB193060 AB193061 AB193062 AB193063 AB193064 AB193065 AB193066 TSC_hg19_v1_chr3_-_20227699 AB187577 AB187578 AB187579 AB187580 AB187581 AB187582 AB567656 AB567657 BC017867 BX648516 NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_138484 AK308095 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257	-139030	-	BC070075 TSC_hg19_v1_chr3_+_20081907 BC060823 AB527402	-284794	+	NM_003884 U57317	-285181	+	AK026072 NM_024697	1426111	-	AK310298 TSC_hg19_v1_chr3_-_22414124	2047430	-	TSC_hg19_v1_chr3_+_23244600 AK307075	2877879	+	AB193056|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193057|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193058|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193059|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193060|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193061|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193062|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193063|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193064|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193065|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193066|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187577|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187578|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187579|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187580|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187581|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187582|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567656|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567657|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC017867|SGOL1|151648|shugoshin-like 1 (S. pombe)##BX648516|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012409|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012410|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012411|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012412|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012413|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_138484|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK308095|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199251|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199252|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199253|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199254|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199255|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199256|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199257|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC070075|KAT2B|8850|K(lysine) acetyltransferase 2B##BC060823|KAT2B|8850|K(lysine) acetyltransferase 2B##NM_003884|KAT2B|8850|K(lysine) acetyltransferase 2B##U57317|KAT2B|8850|K(lysine) acetyltransferase 2B##AK026072|ZNF385D|79750|zinc finger protein 385D##NM_024697|ZNF385D|79750|zinc finger protein 385D##AK310298|ZNF385D|79750|zinc finger protein 385D##AK307075|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2	0.997589	0.0	denovo_WM_7:-25:0.840
chr10	50508261	50508405	reg1004278.p1	6.255	+	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	-1122	+	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	-111907	-	BC029839 BC047597 NM_001164484	-166275	-	NM_001080520	91573	-	BC028954 AK074682 BC063690 NM_170753	223917	-	TSC_hg19_v1_chr10_-_50747072 BC127104 L04791	238724	-	AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##NM_001080520|DRGX|644168|dorsal root ganglia homeobox##BC028954|PGBD3|267004|piggyBac transposable element derived 3##AK074682|PGBD3|267004|piggyBac transposable element derived 3##BC063690|PGBD3|267004|piggyBac transposable element derived 3##NM_170753|PGBD3|267004|piggyBac transposable element derived 3##BC127104|ERCC6|2074|excision repair cross-complementing rodent repair deficiency, complementation group 6##L04791|ERCC6|2074|excision repair cross-complementing rodent repair deficiency, complementation group 6	0.0	0.0	
chr1	179098846	179099014	reg1007470.p1	6.255	+	TSC_hg19_v1_chr1_+_179051236 BC011746 AK316530 AK299966 CU675711 CU676228 CR457354	-47682	+	BC088368 BC001085 TSC_hg19_v1_chr1_+_179051232 BC018292 AJ299403 AJ299441 BC007571 AK025998	-47705	+	NM_022371 TSC_hg19_v1_chr1_+_179051147	-47796	+	FJ542283 BC065912 AK225255 TSC_hg19_v1_chr1_-_179112210 AK309549 NM_001136000 NM_001168239 NM_005158	13270	-	M35296 TSC_hg19_v1_chr1_-_179198813	99844	-	TSC_hg19_v1_chr1_-_179198815 AK311045 NM_001136001 NM_001168236 NM_001168237 NM_001168238 NM_007314	99889	-	BC011746|TOR3A|64222|torsin family 3, member A##AK316530|TOR3A|64222|torsin family 3, member A##AK299966|TOR3A|64222|torsin family 3, member A##CR457354|TOR3A|64222|torsin family 3, member A##BC088368|TOR3A|64222|torsin family 3, member A##BC001085|TOR3A|64222|torsin family 3, member A##BC018292|TOR3A|64222|torsin family 3, member A##AJ299403|TOR3A|64222|torsin family 3, member A##AJ299441|TOR3A|64222|torsin family 3, member A##BC007571|TOR3A|64222|torsin family 3, member A##AK025998|TOR3A|64222|torsin family 3, member A##NM_022371|TOR3A|64222|torsin family 3, member A##FJ542283|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##BC065912|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##AK225255|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##AK309549|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001136000|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168239|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_005158|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##M35296|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##AK311045|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001136001|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168236|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168237|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168238|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_007314|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2	0.99503	0.0	
chr3	179405466	179405633	reg1005755.p2	6.255	+	TSC_hg19_v1_chr3_+_179370901 NM_003940 U75362 BC016146 AK290338 AM393315 AM393392 AM393610 AM393780 DQ892472 DQ895684	-34654	+	TSC_hg19_v1_chr3_+_179322594 NM_001199957 NM_001199958 NM_002492 BX648034 BC005271 BC009796 AK313822 AF047181 BC093071 BC017909 CU679497	-82956	+	AY212270 BC032522 TSC_hg19_v1_chr3_-_179322427 BC021575 NM_020409 NM_177988	-83127	-	AB032593 NM_016559 AB032592 TSC_hg19_v1_chr3_-_179754937 AK299633 AK294501 AK314283 BC036183	349177	-	TSC_hg19_v1_chr3_+_180319985 NM_001042601 NM_133462 AK055984 AL832052 AL833086 BX648669 BC027990 AL833103 AY358762 AK074095 EU832789 GQ129409 CU693360	914454	+	AB075860 TSC_hg19_v1_chr3_+_180320970	915414	+	NM_003940|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##U75362|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##BC016146|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AK290338|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393315|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393392|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393610|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393780|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ892472|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ895684|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##NM_001199957|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_001199958|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_002492|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BX648034|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC005271|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC009796|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AK313822|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AF047181|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC093071|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC017909|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AY212270|MRPL47|57129|mitochondrial ribosomal protein L47##BC032522|MRPL47|57129|mitochondrial ribosomal protein L47##BC021575|MRPL47|57129|mitochondrial ribosomal protein L47##NM_020409|MRPL47|57129|mitochondrial ribosomal protein L47##NM_177988|MRPL47|57129|mitochondrial ribosomal protein L47##AB032593|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_016559|PEX5L|51555|peroxisomal biogenesis factor 5-like##AB032592|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK299633|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK294501|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK314283|PEX5L|51555|peroxisomal biogenesis factor 5-like##BC036183|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_001042601|TTC14|151613|tetratricopeptide repeat domain 14##NM_133462|TTC14|151613|tetratricopeptide repeat domain 14##AK055984|TTC14|151613|tetratricopeptide repeat domain 14##AL832052|TTC14|151613|tetratricopeptide repeat domain 14##AL833086|TTC14|151613|tetratricopeptide repeat domain 14##BX648669|TTC14|151613|tetratricopeptide repeat domain 14##BC027990|TTC14|151613|tetratricopeptide repeat domain 14##AL833103|TTC14|151613|tetratricopeptide repeat domain 14##AY358762|TTC14|151613|tetratricopeptide repeat domain 14##EU832789|TTC14|151613|tetratricopeptide repeat domain 14##GQ129409|TTC14|151613|tetratricopeptide repeat domain 14##AB075860|TTC14|151613|tetratricopeptide repeat domain 14	1.011342	0.0	
chr5	90565184	90565364	reg1007580.p1	6.255	+	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-710660	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-739908	-	NM_006467 AK295434 U93868	-794572	+	AK091866 TSC_hg19_v1_chr5_-_90610220	44971	-	TSC_hg19_v1_chr5_+_90676181 BC043415	110888	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	113858	-	AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3	1.516	0.0	denovo_WM_7:30:0.480	denovo_WM_7:46:0.665
chr15	34618979	34619159	reg1002849.p1	6.254	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-8091	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-101829	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-116768	-	AF105366 AF531258 NM_001042497 NM_133647	9975	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	10894	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	11188	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	1.911666	0.0	denovo_WM_7:-1:0.551	denovo_WM_7:-2:0.206	denovo_WM_7:13:0.554
chr4	17474097	17474225	reg1006931.p1	6.254	+	AF052389 TSC_hg19_v1_chr4_-_16900372 NM_001130834 NM_001290	-573776	-	AK226029 TSC_hg19_v1_chr4_-_16900258	-573902	-	AK300119 AB463834 DQ891981 DQ895171 AK312881 TSC_hg19_v1_chr4_-_16900210 AF068651 AF047337 AF064492 AF064493 BC034019	-574035	-	AB528218 AM393718 DQ891926 DQ895113 CU674280 TSC_hg19_v1_chr4_-_17513714 X04882 BC000576 AK124382 AK296622 AK223437 AK289773 NM_000320	39605	-	BC127863 NM_001079827	42626	+	TSC_hg19_v1_chr4_+_17578852 NM_015907	104721	+	AF052389|LDB2|9079|LIM domain binding 2##NM_001130834|LDB2|9079|LIM domain binding 2##NM_001290|LDB2|9079|LIM domain binding 2##AK226029|LDB2|9079|LIM domain binding 2##AK300119|LDB2|9079|LIM domain binding 2##DQ891981|LDB2|9079|LIM domain binding 2##DQ895171|LDB2|9079|LIM domain binding 2##AK312881|LDB2|9079|LIM domain binding 2##AF068651|LDB2|9079|LIM domain binding 2##AF047337|LDB2|9079|LIM domain binding 2##AF064492|LDB2|9079|LIM domain binding 2##AF064493|LDB2|9079|LIM domain binding 2##BC034019|LDB2|9079|LIM domain binding 2##AM393718|QDPR|5860|quinoid dihydropteridine reductase##DQ891926|QDPR|5860|quinoid dihydropteridine reductase##DQ895113|QDPR|5860|quinoid dihydropteridine reductase##X04882|QDPR|5860|quinoid dihydropteridine reductase##BC000576|QDPR|5860|quinoid dihydropteridine reductase##AK124382|QDPR|5860|quinoid dihydropteridine reductase##AK296622|QDPR|5860|quinoid dihydropteridine reductase##AK223437|QDPR|5860|quinoid dihydropteridine reductase##AK289773|QDPR|5860|quinoid dihydropteridine reductase##NM_000320|QDPR|5860|quinoid dihydropteridine reductase##BC127863|CLRN2|645104|clarin 2##NM_001079827|CLRN2|645104|clarin 2##NM_015907|LAP3|51056|leucine aminopeptidase 3	0.998947	0.304246	CTCF.p2:-6:0.304	denovo_WM_7:35:0.874
chr1	213033599	213033745	reg1008312.p1	6.253	+	AF118637 NM_014053 AK314481 BC048312 TSC_hg19_v1_chr1_+_213031754	-1992	+	TSC_hg19_v1_chr1_-_213031441 AY030238 AY030239 AK092887	-2208	-	AY640234 BC035742 NM_001024601	-12704	-	TSC_hg19_v1_chr1_+_213123945 AK290973 NM_001136474 NM_001136475 NM_024749 AK022567 AK096605 BC053836 BC051856 BC028194	90245	+	AK302675 TSC_hg19_v1_chr1_+_213124038	90351	+	TSC_hg19_v1_chr1_-_213188830 AK299208	155139	-	AF118637|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##NM_014053|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##AK314481|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##BC048312|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##AY030238|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY030239|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY640234|C1orf227|149643|chromosome 1 open reading frame 227##BC035742|C1orf227|149643|chromosome 1 open reading frame 227##NM_001024601|C1orf227|149643|chromosome 1 open reading frame 227##AK290973|VASH2|79805|vasohibin 2##NM_001136474|VASH2|79805|vasohibin 2##NM_001136475|VASH2|79805|vasohibin 2##NM_024749|VASH2|79805|vasohibin 2##AK022567|VASH2|79805|vasohibin 2##AK096605|VASH2|79805|vasohibin 2##BC053836|VASH2|79805|vasohibin 2##BC051856|VASH2|79805|vasohibin 2##BC028194|VASH2|79805|vasohibin 2##AK302675|VASH2|79805|vasohibin 2##AK299208|ANGEL2|90806|angel homolog 2 (Drosophila)	0.9956	0.0	denovo_WM_7:28:0.249	denovo_WM_7:29:0.249	denovo_WM_7:30:0.249	denovo_WM_7:31:0.249
chr7	105318471	105318577	reg1005907.p1	6.253	+	TSC_hg19_v1_chr7_-_105221933 BC062748 BC105284	-96589	-	BC068483 NM_021930 AK055508 TSC_hg19_v1_chr7_+_105172647 AK308126 AF317622 HQ257980	-145878	+	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	-155863	-	AK300338 NM_138495	1084	-	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	198461	-	TSC_hg19_v1_chr7_+_105517250 AK125261	198740	+	BC105284|EFCAB10|100130771|EF-hand calcium binding domain 10##BC068483|RINT1|60561|RAD50 interactor 1##NM_021930|RINT1|60561|RAD50 interactor 1##AK055508|RINT1|60561|RAD50 interactor 1##AK308126|RINT1|60561|RAD50 interactor 1##AF317622|RINT1|60561|RAD50 interactor 1##HQ257980|RINT1|60561|RAD50 interactor 1##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK300338|ATXN7L1|222255|ataxin 7-like 1##NM_138495|ATXN7L1|222255|ataxin 7-like 1##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##AK125261|CDHR3|222256|cadherin-related family member 3	0.998862	0.0	denovo_WM_7:23:0.307	denovo_WM_7:24:0.307	denovo_WM_7:25:0.307
chr12	118765779	118765911	reg1007266.p1	6.252	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-191867	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-191922	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-191970	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	44783	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	44885	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	48557	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.99389	0.0	denovo_WM_7:24:0.981
chr14	96119112	96119243	reg1003717.p2	6.252	+	TSC_hg19_v1_chr14_+_96001402 DQ083331	-117744	+	AB223038 TSC_hg19_v1_chr14_+_96001383	-117794	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	-117809	+	BC051000 NM_004918 AF137027 AB018563 AF110466 BC041616 AB590931 CR457087	33601	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	61290	-	AK023027 TSC_hg19_v1_chr14_+_96342762	223568	+	DQ083331|GLRX5|51218|glutaredoxin 5##AB223038|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5##BC051000|TCL1B|9623|T-cell leukemia/lymphoma 1B##NM_004918|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF137027|TCL1B|9623|T-cell leukemia/lymphoma 1B##AB018563|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF110466|TCL1B|9623|T-cell leukemia/lymphoma 1B##BC041616|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR457087|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##AK023027|LOC100507043|100507043|uncharacterized LOC100507043	2.058434	0.0	denovo_WM_7:-30:0.582	denovo_WM_7:-32:0.339	denovo_WM_7:-77:0.418	denovo_WM_7:-79:0.380
chr17	30677597	30677777	reg1001200.p1	6.252	+	TSC_hg19_v1_chr17_+_30677187 AK291801 AK309979 BC008023 AB209215 BC000962 AB385067 BT007365 CU675901	-442	+	TSC_hg19_v1_chr17_+_30677178 AK298950 AK226172	-506	+	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	-531	+	TSC_hg19_v1_chr17_+_30771493 AK290602	93802	+	TSC_hg19_v1_chr17_+_30771512 AF001212 NM_002815	93818	+	TSC_hg19_v1_chr17_+_30771521 AK300342	93833	+	AK291801|ZNF207|7756|zinc finger protein 207##AK309979|ZNF207|7756|zinc finger protein 207##BC008023|ZNF207|7756|zinc finger protein 207##AB209215|ZNF207|7756|zinc finger protein 207##BC000962|ZNF207|7756|zinc finger protein 207##BT007365|ZNF207|7756|zinc finger protein 207##AK298950|ZNF207|7756|zinc finger protein 207##AK226172|ZNF207|7756|zinc finger protein 207##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207##AK290602|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11##AF001212|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11##NM_002815|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11##AK300342|PSMD11|5717|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	0.016089	0.0	
chr17	55821692	55821835	reg1005795.p1	6.252	+	AK093888 AX748353 NM_170721	-487390	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-487790	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-658620	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	105641	-	AK000746 NM_017949	158986	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	210913	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	0.133147	0.0	
chr17	74402647	74402774	reg1006755.p2	6.252	+	TSC_hg19_v1_chr17_+_74381419 AF266756	-21269	+	CU676993 CU688902 NM_001142602 TSC_hg19_v1_chr17_+_74381358 AK292614 AK023393	-21415	+	TSC_hg19_v1_chr17_+_74380953 AK292294	-21756	+	BC007822 TSC_hg19_v1_chr17_-_74449235	46533	-	TSC_hg19_v1_chr17_-_74449273 AB051521 NM_022066	46578	-	BC092430 NM_001166579	46722	+	AF266756|SPHK1|8877|sphingosine kinase 1##NM_001142602|SPHK1|8877|sphingosine kinase 1##AK292614|SPHK1|8877|sphingosine kinase 1##AK023393|SPHK1|8877|sphingosine kinase 1##AK292294|SPHK1|8877|sphingosine kinase 1##BC007822|UBE2O|63893|ubiquitin-conjugating enzyme E2O##AB051521|UBE2O|63893|ubiquitin-conjugating enzyme E2O##NM_022066|UBE2O|63893|ubiquitin-conjugating enzyme E2O##BC092430|AANAT|15|aralkylamine N-acetyltransferase##NM_001166579|AANAT|15|aralkylamine N-acetyltransferase	1.945772	0.0	denovo_WM_7:-12:0.660
chr5	12110893	12111014	reg1006405.p2	6.252	+	TSC_hg19_v1_chr5_-_11904184 AK296232	-206769	-	U96136 EU328348 TSC_hg19_v1_chr5_-_11904098 AB013805 NM_001332	-206917	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	-1349554	-	AX800026 AY045575 NM_001369	1833635	-	AY050643 TSC_hg19_v1_chr5_-_14011873	1900917	-	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	2032719	+	AK296232|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##U96136|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##EU328348|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AB013805|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_001332|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_004394|DAP|1611|death-associated protein##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)	0.998168	0.0	denovo_WM_7:0:0.528	denovo_WM_7:1:0.471
chr1	12678221	12678388	reg1000365.p3	6.251	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	-721	-	TSC_hg19_v1_chr1_+_12403045 AK057675	-275234	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	-388197	+	NM_001013630	26261	+	AK127828 NM_001103169 NM_001103170	97813	+	BC029894 NM_152290 AK026705 AK298760	127862	+	DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_001013630|AADACL4|343066|arylacetamide deacetylase-like 4##AK127828|AADACL3|126767|arylacetamide deacetylase-like 3##NM_001103169|AADACL3|126767|arylacetamide deacetylase-like 3##NM_001103170|AADACL3|126767|arylacetamide deacetylase-like 3##BC029894|C1orf158|93190|chromosome 1 open reading frame 158##NM_152290|C1orf158|93190|chromosome 1 open reading frame 158##AK026705|C1orf158|93190|chromosome 1 open reading frame 158##AK298760|C1orf158|93190|chromosome 1 open reading frame 158	0.0	0.0	
chr11	118973439	118973619	reg1006008.p4	6.250	+	NM_001382 AK095718	-712	-	AK225994 BC000325 BC047771 BC008817 TSC_hg19_v1_chr11_-_118972586 AK301973 AK312783	-971	-	TSC_hg19_v1_chr11_-_118966176 NM_002105 X14850	-7354	-	TSC_hg19_v1_chr11_+_118978097 AB094094 AK025223 NM_014807	4598	+	TSC_hg19_v1_chr11_+_118978191 BC022219	4654	+	NM_001243259 NM_015517 NM_198971 TSC_hg19_v1_chr11_+_118992297 AK300288 BC017234 AK056362 BC012856 AK301452	18754	+	NM_001382|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK095718|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK225994|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC000325|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC047771|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK301973|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK312783|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##NM_002105|H2AFX|3014|H2A histone family, member X##X14850|H2AFX|3014|H2A histone family, member X##AB094094|C2CD2L|9854|C2CD2-like##AK025223|C2CD2L|9854|C2CD2-like##NM_014807|C2CD2L|9854|C2CD2-like##BC022219|C2CD2L|9854|C2CD2-like##NM_001243259|HINFP|25988|histone H4 transcription factor##NM_015517|HINFP|25988|histone H4 transcription factor##NM_198971|HINFP|25988|histone H4 transcription factor##AK300288|HINFP|25988|histone H4 transcription factor##BC017234|HINFP|25988|histone H4 transcription factor##AK056362|HINFP|25988|histone H4 transcription factor##BC012856|HINFP|25988|histone H4 transcription factor##AK301452|HINFP|25988|histone H4 transcription factor	1.985109	0.0	denovo_WM_7:48:0.978	denovo_WM_7:63:0.977
chr13	43385926	43386062	reg1007217.p2	6.250	+	NM_182508 AK310859 AK098238 BC093659 BC112237	-30270	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	-237660	+	BC040889 NM_033012	-249123	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	180376	-	AF126743 AY248898 NM_013238	211355	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	211708	+	NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15	0.0	0.0	
chr17	6656444	6656624	reg1006381.p1	6.250	+	AJ489980 AY151833 AK172785 AK297612 TSC_hg19_v1_chr17_-_6616686 AK127797 BC104795 BC112151 BC143689 NM_001143838 NM_177550	-39839	-	BC038956 TSC_hg19_v1_chr17_+_6555051 BC052606 BC067087 BC082254 NM_001105520 BC028174	-101471	+	TSC_hg19_v1_chr17_-_6554926 AB527483 AK094033 AX748423 AK311875 BC012539 AF151883 AK130946 NM_016060	-101637	-	NM_017523 NM_199139	2621	+	BC073156 TSC_hg19_v1_chr17_+_6659364 AK292710 AK292848 BC032776 BC058017 EF028165 EF028166 X99699	2844	+	NM_153230 BC034782	23027	+	AJ489980|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AY151833|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK172785|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK297612|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK127797|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC104795|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC112151|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC143689|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_001143838|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_177550|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC038956|C17orf100|388327|chromosome 17 open reading frame 100##BC052606|C17orf100|388327|chromosome 17 open reading frame 100##BC067087|C17orf100|388327|chromosome 17 open reading frame 100##BC082254|C17orf100|388327|chromosome 17 open reading frame 100##NM_001105520|C17orf100|388327|chromosome 17 open reading frame 100##BC028174|C17orf100|388327|chromosome 17 open reading frame 100##AK094033|MED31|51003|mediator complex subunit 31##AK311875|MED31|51003|mediator complex subunit 31##BC012539|MED31|51003|mediator complex subunit 31##AF151883|MED31|51003|mediator complex subunit 31##AK130946|MED31|51003|mediator complex subunit 31##NM_016060|MED31|51003|mediator complex subunit 31##NM_017523|XAF1|54739|XIAP associated factor 1##NM_199139|XAF1|54739|XIAP associated factor 1##BC073156|XAF1|54739|XIAP associated factor 1##AK292710|XAF1|54739|XIAP associated factor 1##AK292848|XAF1|54739|XIAP associated factor 1##BC032776|XAF1|54739|XIAP associated factor 1##BC058017|XAF1|54739|XIAP associated factor 1##EF028165|XAF1|54739|XIAP associated factor 1##EF028166|XAF1|54739|XIAP associated factor 1##X99699|XAF1|54739|XIAP associated factor 1##NM_153230|FBXO39|162517|F-box protein 39##BC034782|FBXO39|162517|F-box protein 39	0.993031	0.0	denovo_WM_7:53:0.238	denovo_WM_7:56:0.376	denovo_WM_7:57:0.243
chr6	106205591	106205771	reg1004106.p2	6.250	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-354686	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-354723	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-354835	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	328515	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	328554	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	341123	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.508561	0.0	denovo_WM_7:0:0.347
chr5	139782467	139782578	reg1005311.p2	6.249	+	BC117677 BC117678 BC127127 BC150486 TSC_hg19_v1_chr5_+_139781478 AF521882 AF521883 BC009420	-1034	+	TSC_hg19_v1_chr5_+_139781454 BC004457 BC009909 BC144623	-1063	+	TSC_hg19_v1_chr5_+_139781428 AK098574 AK074173 AF258557	-1089	+	TSC_hg19_v1_chr5_+_139876504 AF217646	94043	+	TSC_hg19_v1_chr5_+_139889636 BC073958	107142	+	TSC_hg19_v1_chr5_+_139927246 AF038869 NM_003732 BC010881 BC069293 BC073751	144720	+	BC117677|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC117678|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC127127|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC150486|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF521882|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF521883|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough##BC009420|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC004457|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC009909|ANKHD1|54882|ankyrin repeat and KH domain containing 1##BC144623|ANKHD1-EIF4EBP3|404734|ANKHD1-EIF4EBP3 readthrough##AK098574|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AK074173|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF258557|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF217646|ANKHD1|54882|ankyrin repeat and KH domain containing 1##AF038869|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##NM_003732|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##BC010881|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##BC069293|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3##BC073751|EIF4EBP3|8637|eukaryotic translation initiation factor 4E binding protein 3	1.915054	0.0	denovo_WM_7:29:0.868	denovo_WM_7:44:0.437	denovo_WM_7:45:0.523
chr5	14651161	14651272	reg1005740.p1	6.249	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	-69252	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	-69316	+	TSC_hg19_v1_chr5_+_14488527 AK131423	-162677	+	AK123396 TSC_hg19_v1_chr5_-_14664742	13511	-	TSC_hg19_v1_chr5_+_14664772 NM_138348	13560	+	TSC_hg19_v1_chr5_+_14664826 BC015392	13625	+	AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##AK123396|LOC728178|728178|uncharacterized LOC728178##NM_138348|FAM105B|90268|family with sequence similarity 105, member B##BC015392|FAM105B|90268|family with sequence similarity 105, member B	0.0	0.0	
chr7	149580568	149580704	reg1008010.p1	6.249	+	TSC_hg19_v1_chr7_+_149571066 BX640846 AK290086 AK094602 AK098362 AK172725 DQ995344 AY037164	-9555	+	BC023225 TSC_hg19_v1_chr7_-_149570892 BC028735	-9741	-	TSC_hg19_v1_chr7_+_149570049 AF452639 AK057700 NM_001100592 NM_145230	-10594	+	AB039791 NM_001164459	419432	-	TSC_hg19_v1_chr7_+_150020443 NM_001142928 NM_023942 AK055954	439768	+	TSC_hg19_v1_chr7_+_150020552 BC001354	439940	+	BX640846|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK290086|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK094602|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK098362|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK172725|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##DQ995344|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AY037164|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##BC023225|LOC401431|401431|uncharacterized LOC401431##BC028735|LOC401431|401431|uncharacterized LOC401431##AF452639|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK057700|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##NM_001100592|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##NM_145230|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AB039791|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164459|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001142928|LRRC61|65999|leucine rich repeat containing 61##NM_023942|LRRC61|65999|leucine rich repeat containing 61##AK055954|LRRC61|65999|leucine rich repeat containing 61##BC001354|LRRC61|65999|leucine rich repeat containing 61	0.412305	0.977583	denovo_WM_7:-9:0.412	CTCF.p2:43:0.978
chr6	116418217	116418379	reg1005915.p1	6.248	+	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	-36416	-	AF503292 NM_153612 BC093911 BC093913	-2034274	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-2125962	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	3711	+	AK097758 TSC_hg19_v1_chr6_-_116422450	4132	-	BC130621 BC130623 NM_000493	28962	-	BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1##BC130621|COL10A1|1300|collagen, type X, alpha 1##BC130623|COL10A1|1300|collagen, type X, alpha 1##NM_000493|COL10A1|1300|collagen, type X, alpha 1	0.997422	0.15469	denovo_WM_7:9:0.901
chr6	15439230	15439410	reg1007022.p2	6.248	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-190207	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-190419	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-192908	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	223857	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	223970	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	689982	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.997023	0.0	denovo_WM_7:-47:0.313	denovo_WM_7:-48:0.313	denovo_WM_7:-49:0.313
chr9	139303505	139303635	reg1005763.p1	6.248	+	NM_003086	-10682	-	BC035805 TSC_hg19_v1_chr9_-_139268130 BC008877 AK024001 NM_052813 NM_052814	-35443	-	AF311287 AK292081 TSC_hg19_v1_chr9_-_139268093 AK295647 BC070091 AK309043	-35479	-	TSC_hg19_v1_chr9_-_139304915 BC014515	1346	-	TSC_hg19_v1_chr9_-_139305058 NM_001039707 NM_001039708 NM_006643	1485	-	TSC_hg19_v1_chr9_+_139305083 BC132724 BC136599	1510	+	NM_003086|SNAPC4|6621|small nuclear RNA activating complex, polypeptide 4, 190kDa##BC035805|CARD9|64170|caspase recruitment domain family, member 9##BC008877|CARD9|64170|caspase recruitment domain family, member 9##AK024001|CARD9|64170|caspase recruitment domain family, member 9##NM_052813|CARD9|64170|caspase recruitment domain family, member 9##NM_052814|CARD9|64170|caspase recruitment domain family, member 9##AF311287|CARD9|64170|caspase recruitment domain family, member 9##AK292081|CARD9|64170|caspase recruitment domain family, member 9##AK295647|CARD9|64170|caspase recruitment domain family, member 9##AK309043|CARD9|64170|caspase recruitment domain family, member 9##BC014515|SDCCAG3|10807|serologically defined colon cancer antigen 3##NM_001039707|SDCCAG3|10807|serologically defined colon cancer antigen 3##NM_001039708|SDCCAG3|10807|serologically defined colon cancer antigen 3##NM_006643|SDCCAG3|10807|serologically defined colon cancer antigen 3##BC132724|PMPCA|23203|peptidase (mitochondrial processing) alpha##BC136599|PMPCA|23203|peptidase (mitochondrial processing) alpha	1.347743	0.0	denovo_WM_7:14:0.337	denovo_WM_7:73:0.841
chr13	43563197	43563377	reg1003963.p2	6.247	+	NM_182508 AK310859 AK098238 BC093659 BC112237	-207563	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	-414953	+	BC040889 NM_033012	-426416	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	3083	-	AF126743 AY248898 NM_013238	34062	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	34415	+	NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15	0.635267	0.0	
chr3	194125511	194125628	reg1006124.p1	6.246	+	NM_004488	-5575	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	-35102	-	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	-53495	-	NM_024524	63398	-	TSC_hg19_v1_chr3_+_194207865 AK091527	82233	+	TSC_hg19_v1_chr3_+_194304750 AK124168	179164	+	NM_004488|GP5|2814|glycoprotein V (platelet)##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_024524|ATP13A3|79572|ATPase type 13A3##AK091527|FLJ34208|401106|uncharacterized LOC401106	0.0	0.510518	CTCF.p2:-2:0.511
chr6	137546085	137546213	reg1008327.p1	6.246	+	TSC_hg19_v1_chr6_-_137540556 NM_000416	-5591	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-5604	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	-5637	-	BC051352 AK096362 NM_175747	269376	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	642388	+	TSC_hg19_v1_chr6_-_138189314 AK124173	643201	-	NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3	0.0	0.0	
chr6	766704	766848	reg1006965.p1	6.246	+	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	-73686	-	AF508547 BC101697 BC101699 NM_148959	-109823	-	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	-375012	+	BC053850 NM_033260	545898	+	NM_001452 U13220 AB463646	623349	+	BC134421 NM_001453	843904	+	AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1##NM_001452|FOXF2|2295|forkhead box F2##U13220|FOXF2|2295|forkhead box F2##BC134421|FOXC1|2296|forkhead box C1##NM_001453|FOXC1|2296|forkhead box C1	0.99673	0.0	denovo_WM_7:-23:0.470	denovo_WM_7:-24:0.527
chr8	30583392	30583557	reg1007471.p2	6.245	+	S67861 TSC_hg19_v1_chr8_-_30515718 X63469 BC030572 BC001775 NM_002095	-67738	-	NM_001206847	-87358	+	NM_001008710 NM_001008711 NM_001008712 NM_006867 AK304858 D84107 D84108 D84109 D84110 TSC_hg19_v1_chr8_+_30242056 BC003608	-341465	+	BC035691 TSC_hg19_v1_chr8_-_30585320 X15722 AB519179 AB519180 AB519181 AF228704 CU686724	1812	-	BC069244 TSC_hg19_v1_chr8_-_30585478 NM_000637 NM_001195102 NM_001195103 NM_001195104	1992	-	TSC_hg19_v1_chr8_+_30601674 NM_005671 AK296600 BC020694 D83767 CU676648 AY302140	18212	+	S67861|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##X63469|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC030572|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC001775|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_002095|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_001206847|LOC100507341|100507341|uncharacterized LOC100507341##NM_001008710|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008711|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008712|RBPMS|11030|RNA binding protein with multiple splicing##NM_006867|RBPMS|11030|RNA binding protein with multiple splicing##AK304858|RBPMS|11030|RNA binding protein with multiple splicing##D84107|RBPMS|11030|RNA binding protein with multiple splicing##D84108|RBPMS|11030|RNA binding protein with multiple splicing##D84109|RBPMS|11030|RNA binding protein with multiple splicing##D84110|RBPMS|11030|RNA binding protein with multiple splicing##BC003608|RBPMS|11030|RNA binding protein with multiple splicing##BC035691|GSR|2936|glutathione reductase##X15722|GSR|2936|glutathione reductase##AB519179|GSR|2936|glutathione reductase##AB519180|GSR|2936|glutathione reductase##AB519181|GSR|2936|glutathione reductase##AF228704|GSR|2936|glutathione reductase##BC069244|GSR|2936|glutathione reductase##NM_000637|GSR|2936|glutathione reductase##NM_001195102|GSR|2936|glutathione reductase##NM_001195103|GSR|2936|glutathione reductase##NM_001195104|GSR|2936|glutathione reductase##NM_005671|UBXN8|7993|UBX domain protein 8##AK296600|UBXN8|7993|UBX domain protein 8##BC020694|UBXN8|7993|UBX domain protein 8##D83767|UBXN8|7993|UBX domain protein 8##AY302140|UBXN8|7993|UBX domain protein 8	0.992182	0.0	
chr19	35643761	35643900	reg1006733.p1	6.244	+	NM_022006 TSC_hg19_v1_chr19_+_35634167 AK296405 BC018619 AK057825 DQ892489 DQ895700 AB528536	-9636	+	BC029943 TSC_hg19_v1_chr19_-_35633495	-10405	-	NM_005031	-13439	+	TSC_hg19_v1_chr19_+_35645637 NM_014164 AK304012	1796	+	TSC_hg19_v1_chr19_+_35645641 AB072911 BC013834 NM_144779 AY358991 BC018798 AF161462 NM_001164605	1912	+	BC009642 TSC_hg19_v1_chr19_+_35646116	2253	+	NM_022006|FXYD7|53822|FXYD domain containing ion transport regulator 7##BC018619|FXYD7|53822|FXYD domain containing ion transport regulator 7##AK057825|FXYD7|53822|FXYD domain containing ion transport regulator 7##DQ892489|FXYD7|53822|FXYD domain containing ion transport regulator 7##DQ895700|FXYD7|53822|FXYD domain containing ion transport regulator 7##BC029943|LGI4|163175|leucine-rich repeat LGI family, member 4##NM_005031|FXYD1|5348|FXYD domain containing ion transport regulator 1##NM_014164|FXYD5|53827|FXYD domain containing ion transport regulator 5##AK304012|FXYD5|53827|FXYD domain containing ion transport regulator 5##AB072911|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC013834|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_144779|FXYD5|53827|FXYD domain containing ion transport regulator 5##AY358991|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC018798|FXYD5|53827|FXYD domain containing ion transport regulator 5##AF161462|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_001164605|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC009642|FXYD5|53827|FXYD domain containing ion transport regulator 5	1.043906	0.0	
chr2	143628017	143628118	reg1004686.p2	6.244	+	AF176832 NM_018557	-738798	-	TSC_hg19_v1_chr2_-_142888540 AK054663	-739511	-	AF043467 AB162675 BC101461 BC101462 BC101463 BC104741 NM_007226	-4090261	-	NM_001032998 NM_001199241 NM_003937 AK223426 TSC_hg19_v1_chr2_+_143635213 U57721	7139	+	BC000879 TSC_hg19_v1_chr2_+_143635232 AK292095 AK315343 AK290900	7173	+	NM_018460 BC029346 TSC_hg19_v1_chr2_+_143886947 AK308219 AF212222 AF217507 AF217522 AY219338 AK226014	258863	+	AF176832|LRP1B|53353|low density lipoprotein receptor-related protein 1B##NM_018557|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AK054663|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AF043467|NXPH2|11249|neurexophilin 2##AB162675|NXPH2|11249|neurexophilin 2##BC101461|NXPH2|11249|neurexophilin 2##BC101462|NXPH2|11249|neurexophilin 2##BC101463|NXPH2|11249|neurexophilin 2##BC104741|NXPH2|11249|neurexophilin 2##NM_007226|NXPH2|11249|neurexophilin 2##NM_001032998|KYNU|8942|kynureninase##NM_001199241|KYNU|8942|kynureninase##NM_003937|KYNU|8942|kynureninase##AK223426|KYNU|8942|kynureninase##U57721|KYNU|8942|kynureninase##BC000879|KYNU|8942|kynureninase##AK292095|KYNU|8942|kynureninase##AK315343|KYNU|8942|kynureninase##AK290900|KYNU|8942|kynureninase##NM_018460|ARHGAP15|55843|Rho GTPase activating protein 15##AK308219|ARHGAP15|55843|Rho GTPase activating protein 15##AF212222|ARHGAP15|55843|Rho GTPase activating protein 15##AF217507|ARHGAP15|55843|Rho GTPase activating protein 15##AF217522|ARHGAP15|55843|Rho GTPase activating protein 15##AY219338|ARHGAP15|55843|Rho GTPase activating protein 15##AK226014|ARHGAP15|55843|Rho GTPase activating protein 15	0.996295	0.0	denovo_WM_7:-98:0.584	denovo_WM_7:-99:0.293
chr12	98912188	98912317	reg1006081.p2	6.242	+	TSC_hg19_v1_chr12_+_98909434 AK315221 U09086 S76736	-2810	+	TSC_hg19_v1_chr12_+_98909412 AB209297	-2841	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	-2845	+	TSC_hg19_v1_chr12_+_98987424 NM_002635 NM_005888 NM_213611 AK092689 BX647062	75161	+	AK074759 AK222658 AK316598 TSC_hg19_v1_chr12_+_98987463	75211	+	TSC_hg19_v1_chr12_+_98987497 BC001328 BC068067 BC006455 BC011641 X60036 BC051367 AB064666 BC004345 BC011574 BC000998 BC003504	75231	+	AK315221|TMPO|7112|thymopoietin##U09086|TMPO|7112|thymopoietin##S76736|TMPO|7112|thymopoietin##AB209297|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin##NM_002635|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##NM_005888|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##NM_213611|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##AK092689|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BX647062|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##AK074759|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##AK222658|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##AK316598|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC001328|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC068067|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC006455|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC011641|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##X60036|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC051367|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##AB064666|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC004345|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC011574|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC000998|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3##BC003504|SLC25A3|5250|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3	0.995705	0.0	
chr1	33164319	33164451	reg1006070.p1	6.242	+	NM_001135255 NM_005610 TSC_hg19_v1_chr1_+_33116808 AK312571 AK299410 BC003092 X74262 X71810 BC053904 AK222779 BC075836 AB527301 DQ892499 DQ895712 CU678370 BT007309 AK299251 NM_001135256	-47532	+	AY099494 TSC_hg19_v1_chr1_-_33116147 BC058843 AY158005 AY099493 AY151084 AY151085 NM_178547	-48248	-	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	-159341	+	AB590598 AK302275 TSC_hg19_v1_chr1_-_33168346	3921	-	AK297958 TSC_hg19_v1_chr1_-_33168379 NM_001161708 NM_030786	3982	-	TSC_hg19_v1_chr1_+_33207423 NM_020888	43182	+	NM_001135255|RBBP4|5928|retinoblastoma binding protein 4##NM_005610|RBBP4|5928|retinoblastoma binding protein 4##AK312571|RBBP4|5928|retinoblastoma binding protein 4##AK299410|RBBP4|5928|retinoblastoma binding protein 4##BC003092|RBBP4|5928|retinoblastoma binding protein 4##X74262|RBBP4|5928|retinoblastoma binding protein 4##X71810|RBBP4|5928|retinoblastoma binding protein 4##BC053904|RBBP4|5928|retinoblastoma binding protein 4##AK222779|RBBP4|5928|retinoblastoma binding protein 4##BC075836|RBBP4|5928|retinoblastoma binding protein 4##DQ892499|RBBP4|5928|retinoblastoma binding protein 4##DQ895712|RBBP4|5928|retinoblastoma binding protein 4##BT007309|RBBP4|5928|retinoblastoma binding protein 4##AK299251|RBBP4|5928|retinoblastoma binding protein 4##NM_001135256|RBBP4|5928|retinoblastoma binding protein 4##AY099494|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##BC058843|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY158005|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY099493|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151084|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151085|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_178547|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AK302275|SYNC|81493|syncoilin, intermediate filament protein##AK297958|SYNC|81493|syncoilin, intermediate filament protein##NM_001161708|SYNC|81493|syncoilin, intermediate filament protein##NM_030786|SYNC|81493|syncoilin, intermediate filament protein##NM_020888|KIAA1522|57648|KIAA1522	1.730808	0.0	denovo_WM_7:7:0.819	denovo_WM_7:-10:0.514
chr14	50475492	50475630	reg1005769.p2	6.242	+	AK091232 AX746864 NM_001012706	-1324	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-115155	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-115728	+	AF390030 NM_001014830	83799	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	107709	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	222422	-	AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)	0.988908	0.424924	CTCF.p2:14:0.425	denovo_WM_7:-34:0.820
chr6	16640905	16641031	reg1007448.p1	6.242	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-402117	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-497658	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-511531	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	120729	-	NM_001190766	461520	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	640886	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.998255	0.0	denovo_WM_7:-42:0.657	denovo_WM_7:-44:0.210
chrX	9987399	9987540	reg1006087.p1	6.242	+	BC098455 NM_015691	-3676	+	NM_001195081	-52072	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-232926	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	137585	+	AF041210 AB384764 AY539988 AY539994 AY540022 AY540023 EU446510 NM_001193278 NM_001193279 NM_001193280 NM_001193281	548090	-	AF035360 NM_001193277 AY112903	557435	-	BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC140866|SHROOM2|357|shroom family member 2##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4##AF041210|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539988|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539994|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540022|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540023|MID1|4281|midline 1 (Opitz/BBB syndrome)##EU446510|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193278|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193279|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193280|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193281|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)	0.988927	0.0	denovo_WM_7:-22:0.238	denovo_WM_7:-23:0.750
chr10	104885117	104885297	reg1006796.p1	6.241	+	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	-207150	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-255950	+	NM_001136200 NM_144591 AL832477 TSC_hg19_v1_chr10_+_104614015 AK098071 BC015994 BC040069 AK311742	-271206	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	67840	-	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	120466	+	TSC_hg19_v1_chr10_+_105036894 BC006359 NM_032727 S78296 DQ892733 DQ895980	151666	+	BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##NM_001136200|C10orf32|119032|chromosome 10 open reading frame 32##NM_144591|C10orf32|119032|chromosome 10 open reading frame 32##AL832477|C10orf32|119032|chromosome 10 open reading frame 32##AK098071|C10orf32|119032|chromosome 10 open reading frame 32##BC015994|C10orf32|119032|chromosome 10 open reading frame 32##BC040069|C10orf32-AS3MT|100528007|C10orf32-AS3MT readthrough##AK311742|C10orf32|119032|chromosome 10 open reading frame 32##BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE##BC006359|INA|9118|internexin neuronal intermediate filament protein, alpha##NM_032727|INA|9118|internexin neuronal intermediate filament protein, alpha##S78296|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ892733|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ895980|INA|9118|internexin neuronal intermediate filament protein, alpha	0.729466	0.0	denovo_WM_7:-2:0.642
chr12	122751327	122751507	reg1005372.p2	6.241	+	TSC_hg19_v1_chr12_-_122751044 NM_022916	-362	-	AB527663 EU176253 TSC_hg19_v1_chr12_-_122750984 AL833244 BC016617 AF439857 AK026840 AK315545	-419	-	BC046209 NM_019887 NM_138929	-39374	-	AF045652 AF045653 AY563000 TSC_hg19_v1_chr12_-_122839059	87620	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	155820	-	TSC_hg19_v1_chr12_-_122985404 BC065918	234010	-	NM_022916|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##EU176253|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC016617|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AF439857|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AK026840|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AK315545|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC046209|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_019887|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_138929|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AF045652|CLIP1|6249|CAP-GLY domain containing linker protein 1##AF045653|CLIP1|6249|CAP-GLY domain containing linker protein 1##AY563000|CLIP1|6249|CAP-GLY domain containing linker protein 1##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8	1.814573	0.0	denovo_WM_7:-52:0.450	denovo_WM_7:-53:0.450	denovo_WM_7:69:0.792
chr17	50224848	50224972	reg1006428.p2	6.241	+	AF151806 TSC_hg19_v1_chr17_+_49337913 AK314399 BC025276 BC001535	-886985	+	TSC_hg19_v1_chr17_+_49337906 NM_016001	-887011	+	TSC_hg19_v1_chr17_+_49337888 AK026355	-887024	+	TSC_hg19_v1_chr17_-_50235676 AK294652 AK313001	10778	-	TSC_hg19_v1_chr17_-_50236075 BC047456 BC068462	11130	-	CR936674 TSC_hg19_v1_chr17_-_50236127 NM_020178	11228	-	AF151806|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK314399|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC025276|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC001535|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##NM_016001|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK026355|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK294652|CA10|56934|carbonic anhydrase X##AK313001|CA10|56934|carbonic anhydrase X##BC047456|CA10|56934|carbonic anhydrase X##BC068462|CA10|56934|carbonic anhydrase X##NM_020178|CA10|56934|carbonic anhydrase X	0.999409	0.0	denovo_WM_7:-50:0.739
chr19	49152597	49152737	reg1006390.p2	6.241	+	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	-3316	-	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-12063	-	BC010671 NM_001204160 EF107108 AK125560	-24421	+	BC018654 BC018697 BC033207 NM_145807 BC021210	23606	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	46594	+	AK093389 AX748093 NM_182574 BC106047	67578	-	AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC010671|SPHK2|56848|sphingosine kinase 2##NM_001204160|SPHK2|56848|sphingosine kinase 2##EF107108|SPHK2|56848|sphingosine kinase 2##AK125560|SPHK2|56848|sphingosine kinase 2##BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK093389|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_182574|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##BC106047|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator	0.97546	0.0	denovo_WM_7:-24:0.482	denovo_WM_7:-25:0.482
chr7	45067172	45067327	reg1007688.p1	6.241	+	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	-27395	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-41009	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-48552	-	NM_001029835 AK298671 AK303216 AK303534	2	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	61250	-	BC017235 BC014918 AK022575 AK222943 TSC_hg19_v1_chr7_-_45151294	84034	-	AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing##BC017235|TBRG4|9238|transforming growth factor beta regulator 4##BC014918|TBRG4|9238|transforming growth factor beta regulator 4##AK022575|TBRG4|9238|transforming growth factor beta regulator 4##AK222943|TBRG4|9238|transforming growth factor beta regulator 4	0.0	0.0	
chr12	44409277	44409389	reg1005651.p1	6.240	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-179427	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-209221	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-256554	+	D89629 AK315960 AK299277 NM_001145109	860058	-	BC020544 TSC_hg19_v1_chr12_-_45269991	860644	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	860772	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	0.0	0.14315	
chr1	8878177	8878357	reg1000188.p3	6.240	+	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	-675	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-394250	-	NM_001080397	-493878	+	GU170215 NM_001201483	53367	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	60440	-	BC015641 BC027725 TSC_hg19_v1_chr1_-_8938743 BC004458 BC009912 AK222517 BC022545 D28437	60468	-	BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)##BC015641|ENO1|2023|enolase 1, (alpha)##BC027725|ENO1|2023|enolase 1, (alpha)##BC004458|ENO1|2023|enolase 1, (alpha)##BC009912|ENO1|2023|enolase 1, (alpha)##AK222517|ENO1|2023|enolase 1, (alpha)##BC022545|ENO1|2023|enolase 1, (alpha)##D28437|ENO1|2023|enolase 1, (alpha)	0.289717	0.0	
chr2	197042521	197042601	reg1005578.p1	6.239	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-6243	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-6282	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-109066	-	BC117194 BC117198 AB037722 NM_020760	414731	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	461796	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	621852	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.0	0.0	
chr2	34902165	34902345	reg1006885.p1	6.239	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	-1077910	-	AB020653 NM_015376	-1163314	+	TSC_hg19_v1_chr2_+_33701715 BX647990	-1200559	+	TSC_hg19_v1_chr2_+_36582920 AY358371	1680707	+	AB209139 NM_016441 AF167706 BC111989 BC113371 AB384861	1681147	+	AF113124 BC064484 BC054043 BC089390 BC047020 BC110386 TSC_hg19_v1_chr2_-_36825294 BC037566 BC018032 AB076184 NM_001042548 NM_005102	1923027	-	BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AB209139|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##NM_016441|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF167706|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC111989|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC113371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF113124|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC064484|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC054043|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC089390|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC047020|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC110386|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC037566|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC018032|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##AB076184|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_001042548|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_005102|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)	0.712564	0.0	denovo_WM_7:-101:0.207
chr1	64079391	64079484	reg1005403.p2	6.238	+	AK293298 NM_001172819 AK298505	-19923	+	TSC_hg19_v1_chr1_+_64059081 AK294186 BC019920 NM_002633 BC001756 BC067763 AK312254 M83088 BC090856 DQ890618 DQ893786 CU676478 BT006961	-20412	+	AK292220 NM_032437 AK092219 TSC_hg19_v1_chr1_+_63989242 AK315850 AB058702 BC015814	-90298	+	NM_001172818 AK300100	9456	+	TSC_hg19_v1_chr1_+_64239705 AK308088 BC080541 NM_001083592 NM_005012 BC006374 M97675	160222	+	BC029895 NM_152489	590052	+	AK293298|PGM1|5236|phosphoglucomutase 1##NM_001172819|PGM1|5236|phosphoglucomutase 1##AK298505|PGM1|5236|phosphoglucomutase 1##AK294186|PGM1|5236|phosphoglucomutase 1##BC019920|PGM1|5236|phosphoglucomutase 1##NM_002633|PGM1|5236|phosphoglucomutase 1##BC001756|PGM1|5236|phosphoglucomutase 1##BC067763|PGM1|5236|phosphoglucomutase 1##AK312254|PGM1|5236|phosphoglucomutase 1##M83088|PGM1|5236|phosphoglucomutase 1##BC090856|PGM1|5236|phosphoglucomutase 1##DQ890618|PGM1|5236|phosphoglucomutase 1##DQ893786|PGM1|5236|phosphoglucomutase 1##BT006961|PGM1|5236|phosphoglucomutase 1##AK292220|EFCAB7|84455|EF-hand calcium binding domain 7##NM_032437|EFCAB7|84455|EF-hand calcium binding domain 7##AK092219|EFCAB7|84455|EF-hand calcium binding domain 7##AK315850|EFCAB7|84455|EF-hand calcium binding domain 7##AB058702|EFCAB7|84455|EF-hand calcium binding domain 7##BC015814|EFCAB7|84455|EF-hand calcium binding domain 7##NM_001172818|PGM1|5236|phosphoglucomutase 1##AK300100|PGM1|5236|phosphoglucomutase 1##AK308088|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC080541|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_001083592|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_005012|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC006374|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##M97675|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC029895|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)##NM_152489|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)	0.992639	0.0	
chr2	208021943	208022070	reg1005103.p2	6.238	+	BC112076 BC112078 NM_173077 AJ422118	-217706	+	AK021557 TSC_hg19_v1_chr2_+_207630326 AK001516 AF223470 AL833877	-391683	+	NM_001136193 NM_001136194 NM_014929	-391895	+	AB015132 NM_003709 TSC_hg19_v1_chr2_-_208030685 AK314439	8650	-	BC012919 TSC_hg19_v1_chr2_-_208031680	9619	-	NM_004379 NM_134442 TSC_hg19_v1_chr2_+_208394671 BC095407	372637	+	BC112076|CPO|130749|carboxypeptidase O##BC112078|CPO|130749|carboxypeptidase O##NM_173077|CPO|130749|carboxypeptidase O##AJ422118|CPO|130749|carboxypeptidase O##AK021557|FASTKD2|22868|FAST kinase domains 2##AK001516|FASTKD2|22868|FAST kinase domains 2##AF223470|FASTKD2|22868|FAST kinase domains 2##AL833877|FASTKD2|22868|FAST kinase domains 2##NM_001136193|FASTKD2|22868|FAST kinase domains 2##NM_001136194|FASTKD2|22868|FAST kinase domains 2##NM_014929|FASTKD2|22868|FAST kinase domains 2##AB015132|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_003709|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AK314439|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##BC012919|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_004379|CREB1|1385|cAMP responsive element binding protein 1##NM_134442|CREB1|1385|cAMP responsive element binding protein 1##BC095407|CREB1|1385|cAMP responsive element binding protein 1	1.101333	0.0	
chr4	82415487	82415591	reg1006520.p1	6.238	+	TSC_hg19_v1_chr4_-_82393062 AK291459 BC036784 AK303625 AK056257 NM_152545	-22479	-	TSC_hg19_v1_chr4_-_82392993 BX648337 BC121003 BC121004	-22556	-	AB528214 D70899 NM_006259 X94612	-289332	-	D55671 TSC_hg19_v1_chr4_-_83294725	879136	-	AF039575 X03910 AB463729 DQ892240 DQ895440 BC002401 TSC_hg19_v1_chr4_-_83294907	879333	-	TSC_hg19_v1_chr4_-_83295122 D55674 AK057836 D55672 BC023977 BC026015	879541	-	AK291459|RASGEF1B|153020|RasGEF domain family, member 1B##BC036784|RASGEF1B|153020|RasGEF domain family, member 1B##AK303625|RASGEF1B|153020|RasGEF domain family, member 1B##AK056257|RASGEF1B|153020|RasGEF domain family, member 1B##NM_152545|RASGEF1B|153020|RasGEF domain family, member 1B##BX648337|RASGEF1B|153020|RasGEF domain family, member 1B##BC121003|RASGEF1B|153020|RasGEF domain family, member 1B##BC121004|RASGEF1B|153020|RasGEF domain family, member 1B##D70899|PRKG2|5593|protein kinase, cGMP-dependent, type II##NM_006259|PRKG2|5593|protein kinase, cGMP-dependent, type II##X94612|PRKG2|5593|protein kinase, cGMP-dependent, type II##D55671|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AF039575|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##X03910|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ892240|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ895440|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC002401|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55674|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK057836|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55672|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC023977|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC026015|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	0.0	0.0	
chr17	61820231	61820356	reg1006802.p1	6.237	+	TSC_hg19_v1_chr17_-_61819199 AF308302 AK074771 AK293160 AY290821 NM_001003786 NM_001003787 NM_001003788 NM_001165969 NM_001165970 NM_153335	-1046	-	BC043641 TSC_hg19_v1_chr17_-_61819160 AL832407 AK301331 AK075005	-1152	-	TSC_hg19_v1_chr17_-_61777486 AK092301 AX747464 BC004400 NM_030576 AY037154	-42775	-	TSC_hg19_v1_chr17_-_61850935 BC008905 AK027844 AK027786 AK075387 AF226054 AK314328	30624	-	TSC_hg19_v1_chr17_-_61850958 AK225813 NM_020198	30727	-	TSC_hg19_v1_chr17_+_61851529 AK125169	31229	+	AF308302|STRADA|92335|STE20-related kinase adaptor alpha##AK074771|STRADA|92335|STE20-related kinase adaptor alpha##AK293160|STRADA|92335|STE20-related kinase adaptor alpha##AY290821|STRADA|92335|STE20-related kinase adaptor alpha##NM_001003786|STRADA|92335|STE20-related kinase adaptor alpha##NM_001003787|STRADA|92335|STE20-related kinase adaptor alpha##NM_001003788|STRADA|92335|STE20-related kinase adaptor alpha##NM_001165969|STRADA|92335|STE20-related kinase adaptor alpha##NM_001165970|STRADA|92335|STE20-related kinase adaptor alpha##NM_153335|STRADA|92335|STE20-related kinase adaptor alpha##BC043641|STRADA|92335|STE20-related kinase adaptor alpha##AL832407|STRADA|92335|STE20-related kinase adaptor alpha##AK301331|STRADA|92335|STE20-related kinase adaptor alpha##AK075005|STRADA|92335|STE20-related kinase adaptor alpha##AK092301|LIMD2|80774|LIM domain containing 2##BC004400|LIMD2|80774|LIM domain containing 2##NM_030576|LIMD2|80774|LIM domain containing 2##AY037154|LIMD2|80774|LIM domain containing 2##BC008905|CCDC47|57003|coiled-coil domain containing 47##AK027844|CCDC47|57003|coiled-coil domain containing 47##AK027786|CCDC47|57003|coiled-coil domain containing 47##AK075387|CCDC47|57003|coiled-coil domain containing 47##AF226054|CCDC47|57003|coiled-coil domain containing 47##AK314328|CCDC47|57003|coiled-coil domain containing 47##AK225813|CCDC47|57003|coiled-coil domain containing 47##NM_020198|CCDC47|57003|coiled-coil domain containing 47	2.238286	0.0	denovo_WM_7:4:0.488	denovo_WM_7:19:0.307	denovo_WM_7:23:0.343
chr11	78021755	78021875	reg1000802.p2	6.236	+	AK056231 NM_020798 AK301048 AK307875 TSC_hg19_v1_chr11_+_77899953	-121890	+	TSC_hg19_v1_chr11_-_77899673 AK300320 BC036058 NM_001029859 AK095233	-122159	-	TSC_hg19_v1_chr11_+_77850827 AK124949	-170955	+	AB011143 BC152459 NM_012296	31110	-	AB018413 BC131711 TSC_hg19_v1_chr11_-_78128848	106991	-	TSC_hg19_v1_chr11_-_78128866 NM_080491	107061	-	AK056231|USP35|57558|ubiquitin specific peptidase 35##NM_020798|USP35|57558|ubiquitin specific peptidase 35##AK301048|USP35|57558|ubiquitin specific peptidase 35##AK307875|USP35|57558|ubiquitin specific peptidase 35##AK300320|KCTD21|283219|potassium channel tetramerisation domain containing 21##BC036058|KCTD21|283219|potassium channel tetramerisation domain containing 21##NM_001029859|KCTD21|283219|potassium channel tetramerisation domain containing 21##AK095233|KCTD21|283219|potassium channel tetramerisation domain containing 21##AK124949|LOC100289388|100289388|uncharacterized LOC100289388##AB011143|GAB2|9846|GRB2-associated binding protein 2##BC152459|GAB2|9846|GRB2-associated binding protein 2##NM_012296|GAB2|9846|GRB2-associated binding protein 2##AB018413|GAB2|9846|GRB2-associated binding protein 2##BC131711|GAB2|9846|GRB2-associated binding protein 2##NM_080491|GAB2|9846|GRB2-associated binding protein 2	0.0	0.0	
chr19	14496437	14496617	reg1003571.p3	6.235	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	-4272	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	-4478	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-179479	-	TSC_hg19_v1_chr19_-_14529877 AK301847	33362	-	TSC_hg19_v1_chr19_-_14530152 BC001009 BC032128 BC010455 AK293911	33613	-	TSC_hg19_v1_chr19_-_14530193 U90426 NM_005804	33647	-	AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC001009|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC032128|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC010455|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK293911|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##U90426|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##NM_005804|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.986672	0.0	denovo_WM_7:62:0.321	denovo_WM_7:63:0.321	denovo_WM_7:64:0.321
chr6	84411774	84411840	reg1015805.p1	6.235	+	TSC_hg19_v1_chr6_+_84222252 AY358661 BC037170 AK291928	-189527	+	NM_001170423 NM_153362 TSC_hg19_v1_chr6_+_84222226	-189597	+	TSC_hg19_v1_chr6_-_84140899 NM_002395	-270903	-	TSC_hg19_v1_chr6_-_84418505 AK294898	6692	-	TSC_hg19_v1_chr6_-_84418819 AB014556 AK289582 NM_001242792	6970	-	BC044579 TSC_hg19_v1_chr6_-_84419072 CR749348	7248	-	AY358661|PRSS35|167681|protease, serine, 35##BC037170|PRSS35|167681|protease, serine, 35##AK291928|PRSS35|167681|protease, serine, 35##NM_001170423|PRSS35|167681|protease, serine, 35##NM_153362|PRSS35|167681|protease, serine, 35##NM_002395|ME1|4199|malic enzyme 1, NADP(+)-dependent, cytosolic##AK294898|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##AB014556|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##AK289582|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##NM_001242792|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##BC044579|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##CR749348|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)	0.0	0.0	
chr13	42986957	42987137	reg1006823.p1	6.234	+	TSC_hg19_v1_chr13_+_42846292 AF176555 NM_016248	-140762	+	AK302727 NM_001204505 NM_001204506 AK122909 AK302631 BC043292 BC044822	-274837	+	NM_152910 NM_178009 AB078967 AB078968	-364182	+	BC040889 NM_033012	149824	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	161287	+	NM_182508 AK310859 AK098238 BC093659 BC112237	368677	+	AF176555|AKAP11|11215|A kinase (PRKA) anchor protein 11##NM_016248|AKAP11|11215|A kinase (PRKA) anchor protein 11##AK302727|DGKH|160851|diacylglycerol kinase, eta##NM_001204505|DGKH|160851|diacylglycerol kinase, eta##NM_001204506|DGKH|160851|diacylglycerol kinase, eta##AK122909|DGKH|160851|diacylglycerol kinase, eta##AK302631|DGKH|160851|diacylglycerol kinase, eta##BC043292|DGKH|160851|diacylglycerol kinase, eta##BC044822|DGKH|160851|diacylglycerol kinase, eta##NM_152910|DGKH|160851|diacylglycerol kinase, eta##NM_178009|DGKH|160851|diacylglycerol kinase, eta##AB078967|DGKH|160851|diacylglycerol kinase, eta##AB078968|DGKH|160851|diacylglycerol kinase, eta##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30	0.0	0.0	
chr20	48402181	48402361	reg1005428.p1	6.234	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-71805	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-71915	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-72041	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	27037	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	27147	+	AK289644 NM_001135773	128004	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	0.980737	0.0	denovo_WM_7:-39:0.778
chr3	119071318	119071443	reg1007196.p1	6.234	+	TSC_hg19_v1_chr3_+_119013513 AK293726 BC112163 BC112165 AB384581 HQ258543	-57760	+	TSC_hg19_v1_chr3_+_119013229 AB033030 NM_020754	-58149	+	TSC_hg19_v1_chr3_-_118959726 AK001006 AK301688 AK314425 BX647468 CR749555 NM_003778 NM_212543	-111643	-	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	111089	-	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	116445	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	146093	+	AK293726|ARHGAP31|57514|Rho GTPase activating protein 31##BC112163|ARHGAP31|57514|Rho GTPase activating protein 31##BC112165|ARHGAP31|57514|Rho GTPase activating protein 31##HQ258543|ARHGAP31|57514|Rho GTPase activating protein 31##AB033030|ARHGAP31|57514|Rho GTPase activating protein 31##NM_020754|ARHGAP31|57514|Rho GTPase activating protein 31##AK001006|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK301688|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK314425|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BX647468|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##CR749555|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_003778|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_212543|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1	0.823861	0.0	denovo_WM_7:26:0.564
chr5	116099649	116099829	reg1001379.p3	6.234	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-189225	-	TSC_hg19_v1_chr5_+_115898220 D28352	-201515	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-679018	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2224499	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2307072	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2307426	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr5	171405136	171405267	reg1007215.p2	6.233	+	BC006245 TSC_hg19_v1_chr5_+_170847089 AB007422 AB528345 AF211188 AM393798 BT019570 BT019571 DQ892736 DQ895983	-558070	+	AY358811 AF075292 NM_003862	-558539	+	AB042278 AB451236 AB451361 AB463949 BT007011 CU676967 CU677717 CU680364 CU692436 DQ892032 DQ895223 EF429251 X16934 TSC_hg19_v1_chr5_+_170815031	-590210	+	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	28327	-	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	28443	-	BC026213 NM_012300 NM_033644 NM_033645	28675	-	BC006245|FGF18|8817|fibroblast growth factor 18##AB007422|FGF18|8817|fibroblast growth factor 18##AF211188|FGF18|8817|fibroblast growth factor 18##AM393798|FGF18|8817|fibroblast growth factor 18##BT019570|FGF18|8817|fibroblast growth factor 18##BT019571|FGF18|8817|fibroblast growth factor 18##DQ892736|FGF18|8817|fibroblast growth factor 18##DQ895983|FGF18|8817|fibroblast growth factor 18##AY358811|FGF18|8817|fibroblast growth factor 18##AF075292|FGF18|8817|fibroblast growth factor 18##NM_003862|FGF18|8817|fibroblast growth factor 18##AB042278|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB451236|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB451361|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BT007011|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ892032|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ895223|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##EF429251|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##X16934|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11	0.990085	0.0	denovo_WM_7:-21:0.721
chr12	79413597	79413754	reg1007039.p1	6.232	+	TSC_hg19_v1_chr12_+_79258794 BC058917	-154858	+	TSC_hg19_v1_chr12_+_79258597 BC041373	-155083	+	TSC_hg19_v1_chr12_+_79258517 BX647240	-155139	+	CR627387 NM_001135806 AK308743	25776	+	AB590922 CR536549 BC007018 TSC_hg19_v1_chr12_-_80084318	670540	-	U63809 TSC_hg19_v1_chr12_-_80084784 NM_002583	671090	-	BC058917|SYT1|6857|synaptotagmin I##BC041373|SYT1|6857|synaptotagmin I##BX647240|SYT1|6857|synaptotagmin I##CR627387|SYT1|6857|synaptotagmin I##NM_001135806|SYT1|6857|synaptotagmin I##AK308743|SYT1|6857|synaptotagmin I##CR536549|PAWR|5074|PRKC, apoptosis, WT1, regulator##BC007018|PAWR|5074|PRKC, apoptosis, WT1, regulator##U63809|PAWR|5074|PRKC, apoptosis, WT1, regulator##NM_002583|PAWR|5074|PRKC, apoptosis, WT1, regulator	0.082968	0.0	
chr15	44677081	44677230	reg1003756.p1	6.232	+	TSC_hg19_v1_chr15_+_44581110 AK298564 AL832333 AK291026 CU680228 CU687742	-96020	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	-96196	+	AK098265 TSC_hg19_v1_chr15_+_44580937	-96214	+	NM_016396	42423	+	TSC_hg19_v1_chr15_+_44719826 AK291230 AF161478 AF161543	42641	+	TSC_hg19_v1_chr15_+_44719836 BC018623 AK226094 DQ128104 BC035744	42755	+	AK298564|CASC4|113201|cancer susceptibility candidate 4##AL832333|CASC4|113201|cancer susceptibility candidate 4##AK291026|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##NM_016396|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK291230|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161478|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161543|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC018623|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK226094|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##DQ128104|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC035744|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	1.101592	0.0	denovo_WM_7:-40:0.314	denovo_WM_7:-41:0.314	denovo_WM_7:-42:0.314
chr15	62319262	62319397	reg1005376.p1	6.232	+	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	-797832	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	-797905	-	U04899 U04898 NM_002943 NM_134260	-1399644	-	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	33285	-	NM_207322 AF504646	39859	+	NM_001007595	138152	-	NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_207322|C2CD4A|145741|C2 calcium-dependent domain containing 4A##AF504646|C2CD4A|145741|C2 calcium-dependent domain containing 4A##NM_001007595|C2CD4B|388125|C2 calcium-dependent domain containing 4B	0.2341	0.0	denovo_WM_7:-66:0.234
chr8	8293297	8293422	reg1005572.p1	6.231	+	AK122582 NM_001080826	-54137	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-117471	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-207217	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	266339	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	457579	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	567006	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.0	0.0	
chr7	75993749	75993929	reg1003248.p1	6.230	+	BC020963 TSC_hg19_v1_chr7_-_75988335 NM_012479	-5509	-	AK295029 TSC_hg19_v1_chr7_-_75988309 AB024334 AK024230 AK293505	-5546	-	AB384983 AF142498 CR541904 CR541925 CU676788 TSC_hg19_v1_chr7_-_75988268	-5641	-	TSC_hg19_v1_chr7_+_76026838 AK292763 NM_007155 BC113949	33004	+	BC113840 AK172783 AJ312755 NM_080744	45113	-	X56777 M60504 NM_001110354	60422	+	BC020963|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##NM_012479|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK295029|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AB024334|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK024230|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK293505|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AF142498|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541904|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541925|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK292763|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_007155|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##BC113949|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##BC113840|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AK172783|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##AJ312755|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##NM_080744|SRCRB4D|136853|scavenger receptor cysteine rich domain containing, group B (4 domains)##X56777|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##M60504|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)##NM_001110354|ZP3|7784|zona pellucida glycoprotein 3 (sperm receptor)	0.992024	0.0	denovo_WM_7:0:0.244	denovo_WM_7:0:0.244	denovo_WM_7:-1:0.244	denovo_WM_7:1:0.244
chr18	4391860	4392015	reg1005365.p1	6.229	+	AK294777 AK294717 NM_001242762 NM_001242763	-517210	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-517653	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-546607	-	AK304101 TSC_hg19_v1_chr18_-_4455255	63316	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	63333	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	805315	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.0	0.0	
chr19	55127600	55127725	reg1006434.p1	6.229	+	BC047007 AK290919 AK311226 AF025530 NM_006863 BC032238 BC063009 AF025529	-22577	+	TSC_hg19_v1_chr19_+_55085279 U70665 BC017412 AK222651 AF025531 U82276 BC027916 EU915609 EU915610 CU675976 AF041034 U82277 U82278	-42353	+	TSC_hg19_v1_chr19_+_55085256 NM_001130917 NM_006866 U82275 AK130170	-42410	+	AK311555 BC015731 NM_006669 AK292028	975	+	NM_001081638 NM_001081639 TSC_hg19_v1_chr19_+_55141934 AK223310 AF283984 AF004230 NM_001081637 AF283985	14305	+	NM_001081438 NM_006847	46461	+	BC047007|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##AK290919|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##AK311226|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##AF025530|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##NM_006863|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##BC032238|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##BC063009|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##AF025529|LILRA1|11024|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1##U70665|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##BC017412|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##AK222651|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##AF025531|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82276|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##BC027916|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##EU915609|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##EU915610|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82277|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82278|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_001130917|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_006866|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82275|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##AK130170|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##BC015731|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##NM_006669|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##AK292028|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##NM_001081638|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##NM_001081639|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##AK223310|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##AF283984|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##NM_001081637|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##AF283985|LILRB1|10859|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1##NM_001081438|LILRB4|11006|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4##NM_006847|LILRB4|11006|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4	0.0	0.0	
chrX	123096856	123096991	reg1006620.p1	6.229	+	TSC_hg19_v1_chrX_+_123095638 BC001765	-1286	+	NM_001042750 NM_001042751 NM_006603 TSC_hg19_v1_chrX_+_123095573 AL831939 BX641002 CR749433 BX641003	-1350	+	TSC_hg19_v1_chrX_+_123094397 NM_001042749 AK098737 BX640970 AK298633 AK313559	-2399	+	AK026678 TSC_hg19_v1_chrX_+_123234596	137607	+	NM_001114937 NM_002351 AL023657 AK311645	383252	+	HE578281 BC140783 BC144542 BC144543 AF100772 NM_001163278 NM_001163279 NM_014253	1000710	-	BC001765|STAG2|10735|stromal antigen 2##NM_001042750|STAG2|10735|stromal antigen 2##NM_001042751|STAG2|10735|stromal antigen 2##NM_006603|STAG2|10735|stromal antigen 2##AL831939|STAG2|10735|stromal antigen 2##BX641002|STAG2|10735|stromal antigen 2##CR749433|STAG2|10735|stromal antigen 2##BX641003|STAG2|10735|stromal antigen 2##NM_001042749|STAG2|10735|stromal antigen 2##AK098737|STAG2|10735|stromal antigen 2##BX640970|STAG2|10735|stromal antigen 2##AK298633|STAG2|10735|stromal antigen 2##AK313559|STAG2|10735|stromal antigen 2##AK026678|STAG2|10735|stromal antigen 2##NM_001114937|SH2D1A|4068|SH2 domain containing 1A##NM_002351|SH2D1A|4068|SH2 domain containing 1A##AL023657|SH2D1A|4068|SH2 domain containing 1A##AK311645|SH2D1A|4068|SH2 domain containing 1A##BC140783|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##BC144542|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##BC144543|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##AF100772|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001163278|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001163279|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_014253|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)	0.0	0.0	
chr10	103746148	103746311	reg1006110.p1	6.228	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-142622	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-146617	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-168011	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	69683	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	78913	+	AK300588 TSC_hg19_v1_chr10_-_103874641	128390	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.998388	0.0	denovo_WM_7:-16:0.466	denovo_WM_7:-19:0.233
chr16	23304584	23304730	reg1000374.p2	6.228	+	U48936 BC059391 NM_001039 TSC_hg19_v1_chr16_+_23194066	-110605	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	-144108	-	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	-478806	+	NM_000336 BC036352 X87159 AK313192	8970	+	TSC_hg19_v1_chr16_-_23464487 BC000549 BC037563 NM_153603	159838	-	TSC_hg19_v1_chr16_-_23521748 AB384559 CU674130 DQ892534 DQ895745 BC050620 AF165531	217078	-	U48936|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##BC059391|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##NM_001039|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_000336|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC036352|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##X87159|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##AK313192|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC000549|COG7|91949|component of oligomeric golgi complex 7##BC037563|COG7|91949|component of oligomeric golgi complex 7##NM_153603|COG7|91949|component of oligomeric golgi complex 7##DQ892534|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##DQ895745|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##BC050620|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF165531|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2	0.0	0.0	
chr2	95729103	95729283	reg1004075.p2	6.228	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	-37711	+	AK097438 BC021716 NM_144705 AK296678 CU692394	-191943	+	TSC_hg19_v1_chr2_-_91847997 BC030764	-3881190	-	TSC_hg19_v1_chr2_-_95787546 CU680814 DQ892620 DQ895860 AK058160 AK295812	58349	-	AB049940 TSC_hg19_v1_chr2_-_95787749 BC014172 NM_031902	58519	-	AK027363 NM_032788	96069	-	BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##DQ892620|MRPS5|64969|mitochondrial ribosomal protein S5##DQ895860|MRPS5|64969|mitochondrial ribosomal protein S5##AK058160|MRPS5|64969|mitochondrial ribosomal protein S5##AB049940|MRPS5|64969|mitochondrial ribosomal protein S5##BC014172|MRPS5|64969|mitochondrial ribosomal protein S5##NM_031902|MRPS5|64969|mitochondrial ribosomal protein S5##AK027363|ZNF514|84874|zinc finger protein 514##NM_032788|ZNF514|84874|zinc finger protein 514	1.944235	0.0	denovo_WM_7:0:0.494	denovo_WM_7:1:0.494	denovo_WM_7:-76:0.318
chr5	162533281	162533428	reg1007815.p1	6.228	+	NM_000816 NM_198903 NM_198904 BC052926 BC036030 X15376 BC059389 BC069348 BC074795 AK315200 AK299640	-1038509	+	NM_001127648 AB590312 DQ890915	-1255595	+	NM_001127647	-1255963	+	TSC_hg19_v1_chr5_+_162864606 AK316234 NM_004060 NM_199246 AK297190 AK312913 BC007093 BX538035 D78341 L49504 BC000196	331267	+	AB528197 AM392736 AM393438 FJ215684 AK094647 TSC_hg19_v1_chr5_-_162887097	353724	-	AK311957 TSC_hg19_v1_chr5_-_162887119 BC017934 BX538290 NM_145266	353779	-	NM_000816|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198903|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198904|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC052926|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC036030|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##X15376|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC059389|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC069348|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC074795|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK315200|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK299640|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_001127648|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##DQ890915|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_001127647|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK316234|CCNG1|900|cyclin G1##NM_004060|CCNG1|900|cyclin G1##NM_199246|CCNG1|900|cyclin G1##AK297190|CCNG1|900|cyclin G1##AK312913|CCNG1|900|cyclin G1##BC007093|CCNG1|900|cyclin G1##BX538035|CCNG1|900|cyclin G1##D78341|CCNG1|900|cyclin G1##L49504|CCNG1|900|cyclin G1##BC000196|CCNG1|900|cyclin G1##AM392736|NUDCD2|134492|NudC domain containing 2##AM393438|NUDCD2|134492|NudC domain containing 2##FJ215684|NUDCD2|134492|NudC domain containing 2##AK311957|NUDCD2|134492|NudC domain containing 2##BC017934|NUDCD2|134492|NudC domain containing 2##BX538290|NUDCD2|134492|NudC domain containing 2##NM_145266|NUDCD2|134492|NudC domain containing 2	0.012473	0.0	
chr6	27832750	27832930	reg1005328.p2	6.228	+	BC009783 TSC_hg19_v1_chr6_+_27806346 AK312228 BC011372 CU679487 DQ891028 DQ894207 BC101411 BC101412 BC101413 NM_003520	-26460	+	BC104198 BC104199 NM_003510 AK311941 BC034487	-26706	-	BC111093 BC111434 BC128033 NM_003541 BC148271 DQ892605 DQ895845 EU446976 AB463742 AK312028	-33520	-	BC105129 BC112072 TSC_hg19_v1_chr6_+_27833095 BC069306 NM_003511 CU686736 EU446965	242	+	AB464568 EU446959 BC101583 BC101581 BC069101 NM_005322 TSC_hg19_v1_chr6_-_27835367	2499	-	BC067494 BC066884 BC067493 BC069305 NM_003533 TSC_hg19_v1_chr6_-_27840125	7268	-	BC009783|HIST1H2BN|8341|histone cluster 1, H2bn##AK312228|HIST1H2BN|8341|histone cluster 1, H2bn##BC011372|HIST1H2BN|8341|histone cluster 1, H2bn##DQ891028|HIST1H2BN|8341|histone cluster 1, H2bn##DQ894207|HIST1H2BN|8341|histone cluster 1, H2bn##BC101411|HIST1H2BN|8341|histone cluster 1, H2bn##BC101412|HIST1H2BN|8341|histone cluster 1, H2bn##BC101413|HIST1H2BN|8341|histone cluster 1, H2bn##NM_003520|HIST1H2BN|8341|histone cluster 1, H2bn##BC104198|HIST1H2AK|8330|histone cluster 1, H2ak##BC104199|HIST1H2AK|8330|histone cluster 1, H2ak##NM_003510|HIST1H2AK|8330|histone cluster 1, H2ak##AK311941|HIST1H2AK|8330|histone cluster 1, H2ak##BC034487|HIST1H2AK|8330|histone cluster 1, H2ak##NM_003541|HIST1H4K|8362|histone cluster 1, H4k##BC148271|HIST1H4J|8363|histone cluster 1, H4j##DQ892605|HIST1H4F|8361|histone cluster 1, H4f##DQ895845|HIST1H4F|8361|histone cluster 1, H4f##EU446976|HIST1H4A|8359|histone cluster 1, H4a##AK312028|HIST1H4K|8362|histone cluster 1, H4k##BC112072|HIST1H2AL|8332|histone cluster 1, H2al##BC069306|HIST1H2AL|8332|histone cluster 1, H2al##NM_003511|HIST1H2AL|8332|histone cluster 1, H2al##EU446965|HIST1H2AI|8329|histone cluster 1, H2ai##EU446959|HIST1H1B|3009|histone cluster 1, H1b##BC101583|HIST1H1B|3009|histone cluster 1, H1b##BC101581|HIST1H1B|3009|histone cluster 1, H1b##BC069101|HIST1H1B|3009|histone cluster 1, H1b##NM_005322|HIST1H1B|3009|histone cluster 1, H1b##BC067494|HIST1H3I|8354|histone cluster 1, H3i##BC066884|HIST1H3I|8354|histone cluster 1, H3i##BC067493|HIST1H3I|8354|histone cluster 1, H3i##BC069305|HIST1H3I|8354|histone cluster 1, H3i##NM_003533|HIST1H3I|8354|histone cluster 1, H3i	0.985231	0.0	denovo_WM_7:-7:0.708
chrX	18692941	18693096	reg1005814.p1	6.228	+	AB464151 AF014459 DQ426892 NM_000330	-2814	-	BC036091 NM_001037343	-232675	+	BC010966 TSC_hg19_v1_chrX_+_18443727 NM_003159 AK307444 AY217744 Y15057	-249289	+	NM_006240 NM_152224 NM_152226 X97867 AK292235 BC036026	16026	+	TSC_hg19_v1_chrX_-_19002476 NM_000292	309444	-	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	447649	-	AF014459|RS1|6247|retinoschisin 1##DQ426892|RS1|6247|retinoschisin 1##NM_000330|RS1|6247|retinoschisin 1##BC036091|CDKL5|6792|cyclin-dependent kinase-like 5##NM_001037343|CDKL5|6792|cyclin-dependent kinase-like 5##BC010966|CDKL5|6792|cyclin-dependent kinase-like 5##NM_003159|CDKL5|6792|cyclin-dependent kinase-like 5##AK307444|CDKL5|6792|cyclin-dependent kinase-like 5##AY217744|CDKL5|6792|cyclin-dependent kinase-like 5##Y15057|CDKL5|6792|cyclin-dependent kinase-like 5##NM_006240|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152224|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152226|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##X97867|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##AK292235|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##BC036026|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_000292|PHKA2|5256|phosphorylase kinase, alpha 2 (liver)##BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64	1.760303	0.0	denovo_WM_7:-45:0.922	denovo_WM_7:-77:0.459
chr14	96539681	96539787	reg1006807.p1	6.227	+	TSC_hg19_v1_chr14_+_96505698 NM_001252507 BC043593 AB621830 AK001590	-34088	+	AK023027 TSC_hg19_v1_chr14_+_96342762	-196989	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	-359267	-	CR749338 U35875 TSC_hg19_v1_chr14_+_96671131 NM_000623	131343	+	TSC_hg19_v1_chr14_+_96671180 AK299316 AK311049 M88714	131462	+	AK291970 AK309528 NM_000710 TSC_hg19_v1_chr14_+_96722546 U30271 AJ238044	182820	+	NM_001252507|C14orf132|56967|chromosome 14 open reading frame 132##BC043593|C14orf132|56967|chromosome 14 open reading frame 132##AB621830|C14orf132|56967|chromosome 14 open reading frame 132##AK001590|C14orf132|56967|chromosome 14 open reading frame 132##AK023027|LOC100507043|100507043|uncharacterized LOC100507043##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##CR749338|BDKRB2|624|bradykinin receptor B2##NM_000623|BDKRB2|624|bradykinin receptor B2##AK299316|BDKRB2|624|bradykinin receptor B2##AK311049|BDKRB2|624|bradykinin receptor B2##M88714|BDKRB2|624|bradykinin receptor B2##AK291970|BDKRB1|623|bradykinin receptor B1##AK309528|BDKRB1|623|bradykinin receptor B1##NM_000710|BDKRB1|623|bradykinin receptor B1##U30271|BDKRB1|623|bradykinin receptor B1##AJ238044|BDKRB1|623|bradykinin receptor B1	0.0	0.0	
chr2	172403886	172404028	reg1007990.p1	6.227	+	TSC_hg19_v1_chr2_+_172379020 NM_001127383 NM_024843 AK128495 AK316588 AL136693 BC016900 AK291731 AK027115 AK225459 BC065290 HQ257890	-25002	+	AK301485 TSC_hg19_v1_chr2_+_172378762	-25198	+	TSC_hg19_v1_chr2_-_172374248 AB055776	-29711	-	TSC_hg19_v1_chr2_+_172543981 BX537412 AK055491 NM_001378 AK225759 BC091498 AY037160 AK308008 AK298561	140067	+	TSC_hg19_v1_chr2_+_172544264 AK096579 AK075323 AF250307 BC109375 AF134477 AK316119 BC015038	140334	+	AB527259 DQ891540 EU176607 TSC_hg19_v1_chr2_-_172750755 AK091071 BC016932 AJ496568 Y14494 AK022828 AK294638 NM_003705	346826	-	NM_001127383|CYBRD1|79901|cytochrome b reductase 1##NM_024843|CYBRD1|79901|cytochrome b reductase 1##AK128495|CYBRD1|79901|cytochrome b reductase 1##AK316588|CYBRD1|79901|cytochrome b reductase 1##AL136693|CYBRD1|79901|cytochrome b reductase 1##BC016900|CYBRD1|79901|cytochrome b reductase 1##AK291731|CYBRD1|79901|cytochrome b reductase 1##AK027115|CYBRD1|79901|cytochrome b reductase 1##AK225459|CYBRD1|79901|cytochrome b reductase 1##BC065290|CYBRD1|79901|cytochrome b reductase 1##HQ257890|CYBRD1|79901|cytochrome b reductase 1##AK301485|CYBRD1|79901|cytochrome b reductase 1##BX537412|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK055491|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##NM_001378|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK225759|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC091498|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AY037160|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK308008|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK298561|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK096579|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK075323|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AF250307|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC109375|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AF134477|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK316119|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC015038|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##DQ891540|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##EU176607|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK091071|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##BC016932|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AJ496568|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##Y14494|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK022828|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK294638|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##NM_003705|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	0.997633	0.0	denovo_WM_7:-2:0.449	denovo_WM_7:-3:0.449
chr5	32536403	32536566	reg1007720.p2	6.227	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-91548	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-91706	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-133131	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	49172	+	NM_001204376 AK300094 AK308301	174266	+	AK290870 NM_000908 NM_001204375 M59305	175004	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.982735	0.0	denovo_WM_7:-30:0.901
chr10	120846576	120846709	reg1005361.p1	6.226	+	AK307610 AK307610 TSC_hg19_v1_chr10_-_120840323 D50929 D50929 BC064926 BC107776 AK309542 AK309542 NM_003750	-6309	-	TSC_hg19_v1_chr10_-_120840299 U78311 U78311	-6343	-	BC114429 BC114429 TSC_hg19_v1_chr10_-_120840295 U58046 U58046 BC054342 BC033769	-6374	-	TSC_hg19_v1_chr10_+_120863593 AK293365	16938	+	NM_207009 TSC_hg19_v1_chr10_+_120863621	16975	+	TSC_hg19_v1_chr10_+_120863628 AF168713 AK000031 AK297633 AK297971 AK293136 BC022271 CU687018 CU692524	16998	+	AK307610|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK307610|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##D50929|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##D50929|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC064926|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC107776|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK309542|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK309542|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##NM_003750|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U78311|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U78311|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC114429|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC114429|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U58046|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U58046|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC054342|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC033769|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK293365|FAM45A|404636|family with sequence similarity 45, member A##NM_207009|FAM45A|404636|family with sequence similarity 45, member A##AF168713|FAM45A|404636|family with sequence similarity 45, member A##AK000031|FAM45A|404636|family with sequence similarity 45, member A##AK297633|FAM45A|404636|family with sequence similarity 45, member A##AK297971|FAM45B|55855|family with sequence similarity 45, member A pseudogene##AK293136|FAM45A|404636|family with sequence similarity 45, member A##BC022271|FAM45A|404636|family with sequence similarity 45, member A	0.999978	0.0	denovo_WM_7:-6:0.457	denovo_WM_7:-7:0.457
chr17	36807539	36807632	reg1002984.p1	6.226	+	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	-45389	-	BC029278 TSC_hg19_v1_chr17_-_36760969	-46647	-	TSC_hg19_v1_chr17_-_36729122 AK295027	-78463	-	TSC_hg19_v1_chr17_-_36831211 NM_001130677	23600	-	TSC_hg19_v1_chr17_+_36861421 BC064612	54014	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	54305	+	AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##AK295027|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_001130677|C17orf96|100170841|chromosome 17 open reading frame 96##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6	1.992235	0.0	denovo_WM_7:58:0.573	denovo_WM_7:59:0.422
chr19	1184126	1184268	reg1005105.p2	6.226	+	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	-9918	-	TSC_hg19_v1_chr19_-_1174260 AB023180	-9938	-	TSC_hg19_v1_chr19_-_1174256 BC052799	-9969	-	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	21609	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	22494	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	22976	+	AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2	0.998364	0.0	denovo_WM_7:30:0.494	denovo_WM_7:31:0.494
chr4	57303988	57304122	reg1005014.p2	6.226	+	TSC_hg19_v1_chr4_+_57302451 X53793 BT006988 CU679667 DQ890605 DQ893056 DQ893776 DQ896305 AK308527	-1518	+	TSC_hg19_v1_chr4_+_57302425 D28431	-1637	+	NM_001079524 NM_001079525 TSC_hg19_v1_chr4_+_57302303 CR749824 BC019255	-1750	+	TSC_hg19_v1_chr4_+_57333762 NM_006947 BC017057 BC056901 BC105583	29706	+	TSC_hg19_v1_chr4_+_57333798 BC040134 BX537991 AF038851 BC046143 BC065018 AF069765 BC032609 AK225430 AK307397 AB590681 AF077019	29735	+	AY439003 NM_206919	67319	+	X53793|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BT006988|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ890605|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893056|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893776|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ896305|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK308527|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##D28431|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079524|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079525|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##CR749824|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC019255|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_006947|SRP72|6731|signal recognition particle 72kDa##BC017057|SRP72|6731|signal recognition particle 72kDa##BC056901|SRP72|6731|signal recognition particle 72kDa##BC105583|SRP72|6731|signal recognition particle 72kDa##BC040134|SRP72|6731|signal recognition particle 72kDa##BX537991|SRP72|6731|signal recognition particle 72kDa##AF038851|SRP72|6731|signal recognition particle 72kDa##BC046143|SRP72|6731|signal recognition particle 72kDa##BC065018|SRP72|6731|signal recognition particle 72kDa##AF069765|SRP72|6731|signal recognition particle 72kDa##BC032609|SRP72|6731|signal recognition particle 72kDa##AK225430|SRP72|6731|signal recognition particle 72kDa##AK307397|SRP72|6731|signal recognition particle 72kDa##AF077019|SRP72|6731|signal recognition particle 72kDa##AY439003|ARL9|132946|ADP-ribosylation factor-like 9##NM_206919|ARL9|132946|ADP-ribosylation factor-like 9	0.998883	0.0	
chr2	96988007	96988125	reg1005688.p2	6.225	+	BC015425 TSC_hg19_v1_chr2_-_96987632 BC053735	-436	-	NM_014014 TSC_hg19_v1_chr2_-_96971311	-16743	-	TSC_hg19_v1_chr2_-_96971269 AK090671 AX746566	-16790	-	TSC_hg19_v1_chr2_+_96991042 NM_001008949 NM_001163523 BC073153	3020	+	NM_178495 NM_001163524 BC034503	3882	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	13410	+	NM_014014|SNRNP200|23020|small nuclear ribonucleoprotein 200kDa (U5)##AK090671|SNRNP200|23020|small nuclear ribonucleoprotein 200kDa (U5)##NM_001008949|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163523|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC073153|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H	0.97623	0.0	denovo_WM_7:43:0.413	denovo_WM_7:44:0.413
chr3	193411708	193411851	reg1007032.p1	6.225	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-100614	+	TSC_hg19_v1_chr3_+_193311006 BC043443 BC075805 AB011139	-100712	+	TSC_hg19_v1_chr3_+_193310928 NM_015560 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837	-100824	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	442154	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	442176	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	660295	-	BC043443|OPA1|4976|optic atrophy 1 (autosomal dominant)##BC075805|OPA1|4976|optic atrophy 1 (autosomal dominant)##AB011139|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_015560|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130831|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130832|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130833|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130834|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130835|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130836|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130837|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2	0.027157	0.0	
chr6	15048734	15048844	reg1007023.p1	6.225	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-930767	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-930884	+	NM_001251901	-931303	+	TSC_hg19_v1_chr6_+_15245702 AK302624	196928	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	197623	+	BC033996 TSC_hg19_v1_chr6_-_15248900	200112	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	0.356969	0.0	denovo_WM_7:16:0.330
chr14	76090345	76090458	reg1006068.p1	6.224	+	AK297002 NM_001195283	-18597	+	NM_017791 AY260572 AY260577 BC019087 AK000378	-45436	+	TSC_hg19_v1_chr14_+_75988840 D42106	-101549	+	AF134159 TSC_hg19_v1_chr14_-_76127220 AK311764 AL136658 AF136971 AF161406 BC002444	36795	-	TSC_hg19_v1_chr14_-_76127535 BX248022 NM_007176	37154	-	NM_015072 TSC_hg19_v1_chr14_+_76127588 BC110652	37168	+	AK297002|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_001195283|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##AF134159|C14orf1|11161|chromosome 14 open reading frame 1##AK311764|C14orf1|11161|chromosome 14 open reading frame 1##AL136658|C14orf1|11161|chromosome 14 open reading frame 1##AF136971|C14orf1|11161|chromosome 14 open reading frame 1##AF161406|C14orf1|11161|chromosome 14 open reading frame 1##BC002444|C14orf1|11161|chromosome 14 open reading frame 1##BX248022|C14orf1|11161|chromosome 14 open reading frame 1##NM_007176|C14orf1|11161|chromosome 14 open reading frame 1##NM_015072|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##BC110652|TTLL5|23093|tubulin tyrosine ligase-like family, member 5	0.992504	0.0	denovo_WM_7:0:0.993
chr6	25279804	25279915	reg1002863.p1	6.223	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	-201	+	TSC_hg19_v1_chr6_+_25279316 BC040903	-541	+	TSC_hg19_v1_chr6_-_24936189 AK299047	-343676	-	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	35	+	TSC_hg19_v1_chr6_-_25571218 Y10205	291399	-	AK289477 NM_006998 BC000336 BC003036 Y16752	372564	+	AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK299047|FAM65B|9750|family with sequence similarity 65, member B##BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A##AK289477|SCGN|10590|secretagogin, EF-hand calcium binding protein##NM_006998|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC000336|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC003036|SCGN|10590|secretagogin, EF-hand calcium binding protein##Y16752|SCGN|10590|secretagogin, EF-hand calcium binding protein	0.998158	0.0	denovo_WM_7:-12:0.827
chr6	138296875	138297012	reg1007246.p2	6.222	+	TSC_hg19_v1_chr6_-_138189314 AK124173	-107593	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	-108406	+	BC051352 AK096362 NM_175747	-481418	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	131625	-	TSC_hg19_v1_chr6_+_138483075 AB252196 NM_020340	186193	+	BC069109 NM_021635 AF189269 AF189270	242683	-	AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector##AB252196|KIAA1244|57221|KIAA1244##NM_020340|KIAA1244|57221|KIAA1244##BC069109|PBOV1|59351|prostate and breast cancer overexpressed 1##NM_021635|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189269|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189270|PBOV1|59351|prostate and breast cancer overexpressed 1	0.073414	0.927229	CTCF.p2:32:0.927
chr10	13377964	13378102	reg1006470.p1	6.221	+	TSC_hg19_v1_chr10_-_13342064 AF023462 BC029512 AF112977 BC021011 NM_006214	-35937	-	TSC_hg19_v1_chr10_-_13342061 CR542055 DQ891007 DQ894185	-35984	-	NM_001037537	-36288	-	TSC_hg19_v1_chr10_-_13390036 AK301568 AK309829	12006	-	TSC_hg19_v1_chr10_-_13390214 U34044 BC063816 GU954545 GU954546 GU954547 GU954548 GU954549 NM_001195602 NM_001195604 NM_012247	12234	-	BC031618 AK097602 NM_001100912 NM_152751	166926	-	AF023462|PHYH|5264|phytanoyl-CoA 2-hydroxylase##BC029512|PHYH|5264|phytanoyl-CoA 2-hydroxylase##AF112977|PHYH|5264|phytanoyl-CoA 2-hydroxylase##BC021011|PHYH|5264|phytanoyl-CoA 2-hydroxylase##NM_006214|PHYH|5264|phytanoyl-CoA 2-hydroxylase##CR542055|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ891007|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ894185|PHYH|5264|phytanoyl-CoA 2-hydroxylase##NM_001037537|PHYH|5264|phytanoyl-CoA 2-hydroxylase##AK301568|SEPHS1|22929|selenophosphate synthetase 1##AK309829|SEPHS1|22929|selenophosphate synthetase 1##U34044|SEPHS1|22929|selenophosphate synthetase 1##BC063816|SEPHS1|22929|selenophosphate synthetase 1##GU954545|SEPHS1|22929|selenophosphate synthetase 1##GU954546|SEPHS1|22929|selenophosphate synthetase 1##GU954547|SEPHS1|22929|selenophosphate synthetase 1##GU954548|SEPHS1|22929|selenophosphate synthetase 1##GU954549|SEPHS1|22929|selenophosphate synthetase 1##NM_001195602|SEPHS1|22929|selenophosphate synthetase 1##NM_001195604|SEPHS1|22929|selenophosphate synthetase 1##NM_012247|SEPHS1|22929|selenophosphate synthetase 1##BC031618|BEND7|222389|BEN domain containing 7##AK097602|BEND7|222389|BEN domain containing 7##NM_001100912|BEND7|222389|BEN domain containing 7##NM_152751|BEND7|222389|BEN domain containing 7	0.999297	0.0	
chr4	128972456	128972573	reg1006144.p1	6.221	+	AK294184 AK294527 BC029503 AK294957 NM_152778	-85399	-	TSC_hg19_v1_chr4_+_128886618 AK024759 BC058847 BC075793 BC128142 BC128143	-85875	+	TSC_hg19_v1_chr4_+_128886524 BC111400 NM_001039717 BC058898 BC034253	-86058	+	TSC_hg19_v1_chr4_+_128982466 AK310421 AK092764 AX747714	9928	+	TSC_hg19_v1_chr4_+_128982483 BC002840 BC018794 BC110300	9972	+	AL832170 NM_018078 NM_032239 NM_178043 TSC_hg19_v1_chr4_+_128982502	9988	+	AK294184|MFSD8|256471|major facilitator superfamily domain containing 8##AK294527|MFSD8|256471|major facilitator superfamily domain containing 8##BC029503|MFSD8|256471|major facilitator superfamily domain containing 8##AK294957|MFSD8|256471|major facilitator superfamily domain containing 8##NM_152778|MFSD8|256471|major facilitator superfamily domain containing 8##AK024759|C4orf29|80167|chromosome 4 open reading frame 29##BC058847|C4orf29|80167|chromosome 4 open reading frame 29##BC075793|C4orf29|80167|chromosome 4 open reading frame 29##BC128142|C4orf29|80167|chromosome 4 open reading frame 29##BC128143|C4orf29|80167|chromosome 4 open reading frame 29##BC111400|C4orf29|80167|chromosome 4 open reading frame 29##NM_001039717|C4orf29|80167|chromosome 4 open reading frame 29##BC058898|C4orf29|80167|chromosome 4 open reading frame 29##BC034253|C4orf29|80167|chromosome 4 open reading frame 29##AK310421|LARP1B|55132|La ribonucleoprotein domain family, member 1B##AK092764|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC002840|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC018794|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC110300|LARP1B|55132|La ribonucleoprotein domain family, member 1B##AL832170|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_018078|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_032239|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_178043|LARP1B|55132|La ribonucleoprotein domain family, member 1B	1.411034	0.017805	denovo_WM_7:6:0.486	denovo_WM_7:8:0.426	denovo_WM_7:-60:0.336
chr6	21438540	21438665	reg1004885.p1	6.221	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-903879	+	CR749285 NM_001243076	-1034569	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-1036499	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	155770	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	228057	+	BC015850 NM_000948	859127	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.0	
chr12	92270988	92271168	reg1007139.p1	6.220	+	NM_001920	-694273	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-694498	-	AK291309 BX571756 TSC_hg19_v1_chr12_-_91573325 NM_133503	-697767	-	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	268565	-	AJ845165 AJ845166 NM_001025233	546656	+	AJ845168 NM_001025232	550845	-	NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AK291309|DCN|1634|decorin##BX571756|DCN|1634|decorin##NM_133503|DCN|1634|decorin##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand	0.0	0.0	
chr2	196440612	196440758	reg1008319.p1	6.220	+	BC008973 AB017269 AY358907 AK074632 AL157430 AF179274 NM_016192 TSC_hg19_v1_chr2_-_193059657 AF242222 AK222691 AK315376	-3381056	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	-3381371	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	-3728714	-	BC029413 NM_001127257 CR749813	80890	+	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	81223	+	AB463018 AF327442 AK094515 NM_018897 AB023161	492810	-	BC008973|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB017269|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AY358907|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074632|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AL157430|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF179274|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##NM_016192|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF242222|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK222691|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK315376|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7	0.97781	0.0	denovo_WM_7:-37:0.869
chr8	37992474	37992651	reg1007354.p2	6.220	+	NM_001105214 AK291938 AF056717 BC015936	-29160	+	TSC_hg19_v1_chr8_+_37963046 AK291750 AK293699 AB020982 AF056718 AK298483 AB385056 AK311336	-29478	+	NM_004674 TSC_hg19_v1_chr8_+_37963033	-29541	+	CU679741 CR456803 CR541850 DQ891806 DQ894990 BC010550 AF035277 TSC_hg19_v1_chr8_-_38008471 U17280 AK315122 BX647744 AK090513 S79669 NM_000349	15903	-	AB527991 BC001767 TSC_hg19_v1_chr8_-_38034002 AF000177 AK312159 AJ238094	41372	-	TSC_hg19_v1_chr8_+_38034068 BC000800 NM_001204878 NM_004874	41532	+	NM_001105214|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK291938|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AF056717|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##BC015936|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK291750|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK293699|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AB020982|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AF056718|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK298483|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK311336|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##NM_004674|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##CR456803|STAR|6770|steroidogenic acute regulatory protein##CR541850|STAR|6770|steroidogenic acute regulatory protein##DQ891806|STAR|6770|steroidogenic acute regulatory protein##DQ894990|STAR|6770|steroidogenic acute regulatory protein##BC010550|STAR|6770|steroidogenic acute regulatory protein##AF035277|STAR|6770|steroidogenic acute regulatory protein##U17280|STAR|6770|steroidogenic acute regulatory protein##AK315122|STAR|6770|steroidogenic acute regulatory protein##BX647744|STAR|6770|steroidogenic acute regulatory protein##AK090513|STAR|6770|steroidogenic acute regulatory protein##S79669|STAR|6770|steroidogenic acute regulatory protein##NM_000349|STAR|6770|steroidogenic acute regulatory protein##BC001767|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF000177|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312159|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238094|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000800|BAG4|9530|BCL2-associated athanogene 4##NM_001204878|BAG4|9530|BCL2-associated athanogene 4##NM_004874|BAG4|9530|BCL2-associated athanogene 4	0.999657	0.0	denovo_WM_7:16:0.842
chr1	182618398	182618562	reg1005342.p2	6.219	+	AF493937 BT006638 CU675307 AB528682 U94829 U70426 BC006243 TSC_hg19_v1_chr1_-_182573525 AK301261 AK311880 NM_002928	-45010	-	CU675308 TSC_hg19_v1_chr1_+_182569465	-49034	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	-60097	-	BC069677 BC069718 BC103865 BC103866 BC103867 AF297015 NM_001102450 NM_033345	23561	-	NM_001200050 NM_001200051 NM_001200052 NM_001200056 NM_030769 BC042003	140104	+	BC034966 AK313225 BC058003 TSC_hg19_v1_chr1_+_182758907 AK297017 AK301068 AY336748	140411	+	AF493937|RGS16|6004|regulator of G-protein signaling 16##BT006638|RGS16|6004|regulator of G-protein signaling 16##U94829|RGS16|6004|regulator of G-protein signaling 16##U70426|RGS16|6004|regulator of G-protein signaling 16##BC006243|RGS16|6004|regulator of G-protein signaling 16##AK301261|RGS16|6004|regulator of G-protein signaling 16##AK311880|RGS16|6004|regulator of G-protein signaling 16##NM_002928|RGS16|6004|regulator of G-protein signaling 16##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC069677|RGS8|85397|regulator of G-protein signaling 8##BC069718|RGS8|85397|regulator of G-protein signaling 8##BC103865|RGS8|85397|regulator of G-protein signaling 8##BC103866|RGS8|85397|regulator of G-protein signaling 8##BC103867|RGS8|85397|regulator of G-protein signaling 8##AF297015|RGS8|85397|regulator of G-protein signaling 8##NM_001102450|RGS8|85397|regulator of G-protein signaling 8##NM_033345|RGS8|85397|regulator of G-protein signaling 8##NM_001200050|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200051|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200052|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200056|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_030769|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC042003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC034966|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK313225|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC058003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK297017|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK301068|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AY336748|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)	0.0	0.0	
chr11	47876315	47876446	reg1008857.p1	6.218	+	TSC_hg19_v1_chr11_-_47869903 BC125227 BC125228 BC009822 NM_015231	-6402	-	AB385295 D83781 TSC_hg19_v1_chr11_-_47869883 AK026236 BX647634 AK302396 AK304308 AL832029	-6499	-	EU832174 EU832267 TSC_hg19_v1_chr11_-_47788867 AK054636 BC037404 BC006557 NM_015308 AB023231	-87428	-	TSC_hg19_v1_chr11_+_48002110 NM_001098503 NM_002843 U10886	125711	+	D37781 TSC_hg19_v1_chr11_+_48002120	125740	+	TSC_hg19_v1_chr11_+_48002270 AL359057 BC063417	125979	+	BC125227|NUP160|23279|nucleoporin 160kDa##BC125228|NUP160|23279|nucleoporin 160kDa##BC009822|NUP160|23279|nucleoporin 160kDa##NM_015231|NUP160|23279|nucleoporin 160kDa##D83781|NUP160|23279|nucleoporin 160kDa##AK026236|NUP160|23279|nucleoporin 160kDa##BX647634|NUP160|23279|nucleoporin 160kDa##AK302396|NUP160|23279|nucleoporin 160kDa##AK304308|NUP160|23279|nucleoporin 160kDa##AL832029|NUP160|23279|nucleoporin 160kDa##EU832174|FNBP4|23360|formin binding protein 4##EU832267|FNBP4|23360|formin binding protein 4##AK054636|FNBP4|23360|formin binding protein 4##BC037404|FNBP4|23360|formin binding protein 4##BC006557|FNBP4|23360|formin binding protein 4##NM_015308|FNBP4|23360|formin binding protein 4##AB023231|FNBP4|23360|formin binding protein 4##NM_001098503|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_002843|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##U10886|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##D37781|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##AL359057|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##BC063417|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J	0.269668	0.0	
chr1	204256322	204256442	reg1005534.p2	6.218	+	CU691306 TSC_hg19_v1_chr1_-_204183117 AB075871 BC058832 AK124645 NM_198447	-73255	-	AF218017 BC022819 AK291695 NM_002256 TSC_hg19_v1_chr1_-_204165620	-90801	-	CR536498 AB464139 CU690486 BC033474 BC047752 NM_000537	-120940	-	AB023186 BC152475 NM_014935 TSC_hg19_v1_chr1_-_204329058	72668	-	TSC_hg19_v1_chr1_+_204380508 BC009873	124139	+	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	124558	-	AB075871|GOLT1A|127845|golgi transport 1A##BC058832|GOLT1A|127845|golgi transport 1A##AK124645|GOLT1A|127845|golgi transport 1A##NM_198447|GOLT1A|127845|golgi transport 1A##AF218017|KISS1|3814|KiSS-1 metastasis-suppressor##BC022819|KISS1|3814|KiSS-1 metastasis-suppressor##AK291695|KISS1|3814|KiSS-1 metastasis-suppressor##NM_002256|KISS1|3814|KiSS-1 metastasis-suppressor##CR536498|REN|5972|renin##BC033474|REN|5972|renin##BC047752|REN|5972|renin##NM_000537|REN|5972|renin##AB023186|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC152475|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##NM_014935|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B	0.99945	0.0	denovo_WM_7:-11:0.720
chr19	41225301	41225451	reg1006962.p2	6.218	+	TSC_hg19_v1_chr19_+_41223285 D38169	-2085	+	TSC_hg19_v1_chr19_+_41223016 BC060788 NM_025194 AJ290975	-2285	+	TSC_hg19_v1_chr19_-_41222801 AK022291 NM_024876	-2570	-	BC020262 NM_198476	30451	-	TSC_hg19_v1_chr19_-_41256350 AK298068 AK310021	30981	-	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	31026	-	D38169|ITPKC|80271|inositol-trisphosphate 3-kinase C##BC060788|ITPKC|80271|inositol-trisphosphate 3-kinase C##NM_025194|ITPKC|80271|inositol-trisphosphate 3-kinase C##AJ290975|ITPKC|80271|inositol-trisphosphate 3-kinase C##AK022291|ADCK4|79934|aarF domain containing kinase 4##NM_024876|ADCK4|79934|aarF domain containing kinase 4##BC020262|C19orf54|284325|chromosome 19 open reading frame 54##NM_198476|C19orf54|284325|chromosome 19 open reading frame 54##AK298068|C19orf54|284325|chromosome 19 open reading frame 54##AK310021|C19orf54|284325|chromosome 19 open reading frame 54##BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54	0.994008	0.0	denovo_WM_7:30:0.404	denovo_WM_7:31:0.566
chr2	74692556	74692736	reg1005860.p1	6.218	+	TSC_hg19_v1_chr2_-_74692541 AK313355 NM_001146158 NM_006302	-96	-	TSC_hg19_v1_chr2_-_74692510 X87237 BC002804 BC028337 AK307991	-134	-	BC117250 BC117252 BC143934 TSC_hg19_v1_chr2_-_74692487 AK292553 AK304655	-192	-	TSC_hg19_v1_chr2_-_74699815 BC012163 NM_053050	7213	-	HQ258495 TSC_hg19_v1_chr2_-_74710051 BC117269 BC143398 BC143399 AK075543	17414	-	TSC_hg19_v1_chr2_+_74710207 BC060805 NM_022492 BC045536 AK090520 AX746494 AK022850 AK225626 AK303105 AK303245 BC096709 BC098114 BC098365 BC099729 AK223355 AK301585 BC036017 BX648131 BC047084	17561	+	AK313355|MOGS|7841|mannosyl-oligosaccharide glucosidase##NM_001146158|MOGS|7841|mannosyl-oligosaccharide glucosidase##NM_006302|MOGS|7841|mannosyl-oligosaccharide glucosidase##X87237|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC002804|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC028337|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK307991|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117250|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117252|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC143934|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK292553|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK304655|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC012163|MRPL53|116540|mitochondrial ribosomal protein L53##NM_053050|MRPL53|116540|mitochondrial ribosomal protein L53##HQ258495|CCDC142|84865|coiled-coil domain containing 142##BC117269|CCDC142|84865|coiled-coil domain containing 142##BC143398|CCDC142|84865|coiled-coil domain containing 142##BC143399|CCDC142|84865|coiled-coil domain containing 142##AK075543|CCDC142|84865|coiled-coil domain containing 142##BC060805|TTC31|64427|tetratricopeptide repeat domain 31##NM_022492|TTC31|64427|tetratricopeptide repeat domain 31##BC045536|TTC31|64427|tetratricopeptide repeat domain 31##AK090520|TTC31|64427|tetratricopeptide repeat domain 31##AK022850|TTC31|64427|tetratricopeptide repeat domain 31##AK225626|TTC31|64427|tetratricopeptide repeat domain 31##AK303105|TTC31|64427|tetratricopeptide repeat domain 31##AK303245|TTC31|64427|tetratricopeptide repeat domain 31##BC096709|TTC31|64427|tetratricopeptide repeat domain 31##BC098114|TTC31|64427|tetratricopeptide repeat domain 31##BC098365|TTC31|64427|tetratricopeptide repeat domain 31##BC099729|TTC31|64427|tetratricopeptide repeat domain 31##AK223355|TTC31|64427|tetratricopeptide repeat domain 31##AK301585|TTC31|64427|tetratricopeptide repeat domain 31##BC036017|TTC31|64427|tetratricopeptide repeat domain 31##BX648131|TTC31|64427|tetratricopeptide repeat domain 31##BC047084|TTC31|64427|tetratricopeptide repeat domain 31	0.0	0.0	
chr4	162209293	162209397	reg1005835.p2	6.218	+	AK294459 NM_014247	-2020348	+	AK058100 NM_152543	-2253013	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-2519060	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	875806	-	TSC_hg19_v1_chr4_-_164088002 AK097352	1878647	-	TSC_hg19_v1_chr4_-_164088043 AK308601	1878692	-	AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##AK308601|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.886792	0.0	denovo_WM_7:7:0.339	denovo_WM_7:8:0.340
chr10	82259928	82260098	reg1006879.p1	6.217	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-45909	+	TSC_hg19_v1_chr10_+_82214071 AF311903	-45942	+	AK074558 AK295321 AL136638 TSC_hg19_v1_chr10_+_82214066	-45945	+	AK123885 NM_207372	37644	+	AK123978 NM_001145719	40561	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	1375069	+	BC002920|TSPAN14|81619|tetraspanin 14##AF311903|TSPAN14|81619|tetraspanin 14##AK074558|TSPAN14|81619|tetraspanin 14##AK295321|TSPAN14|81619|tetraspanin 14##AL136638|TSPAN14|81619|tetraspanin 14##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3	1.989862	0.0	denovo_WM_7:65:0.432	denovo_WM_7:66:0.288	denovo_WM_7:81:0.320	denovo_WM_7:82:0.464
chr12	31916143	31916272	reg1006558.p1	6.217	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-34151	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-34233	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-103593	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	28997	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	196124	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	196187	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.997596	0.0	denovo_WM_7:-50:0.310	denovo_WM_7:-51:0.310	denovo_WM_7:-52:0.310
chr3	193583208	193583347	reg1005113.p1	6.216	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-272112	+	TSC_hg19_v1_chr3_+_193311006 BC043443 BC075805 AB011139	-272210	+	TSC_hg19_v1_chr3_+_193310928 NM_015560 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837	-272322	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	270656	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	270678	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	488797	-	BC043443|OPA1|4976|optic atrophy 1 (autosomal dominant)##BC075805|OPA1|4976|optic atrophy 1 (autosomal dominant)##AB011139|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_015560|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130831|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130832|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130833|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130834|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130835|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130836|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130837|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2	0.998074	0.0	denovo_WM_7:-14:0.957
chrX	147612077	147612214	reg1006529.p2	6.216	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	-29957	+	BC034320 NM_152578 AY211917 AK098602	-549290	+	TSC_hg19_v1_chrX_+_146993685 CU691632	-618452	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	188467	+	CU675281 AF050145 BC006170 TSC_hg19_v1_chrX_-_148586837 BX647357 L40586 M58342 AK294541 NM_000202 NM_001166550 NM_006123	974629	-	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	1010285	-	NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2##AF050145|IDS|3423|iduronate 2-sulfatase##BC006170|IDS|3423|iduronate 2-sulfatase##BX647357|IDS|3423|iduronate 2-sulfatase##L40586|IDS|3423|iduronate 2-sulfatase##M58342|IDS|3423|iduronate 2-sulfatase##AK294541|IDS|3423|iduronate 2-sulfatase##NM_000202|IDS|3423|iduronate 2-sulfatase##NM_001166550|IDS|3423|iduronate 2-sulfatase##NM_006123|IDS|3423|iduronate 2-sulfatase##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434	0.956641	0.0	denovo_WM_7:-25:0.957
chr1	40509847	40509970	reg1006021.p1	6.215	+	TSC_hg19_v1_chr1_+_40506457 L12168	-3450	+	TSC_hg19_v1_chr1_+_40506444 BC013963	-3467	+	AK295396 AK298110 TSC_hg19_v1_chr1_+_40506430 M98474 AK298094	-3480	+	CR542053 CU678959 AK301682 TSC_hg19_v1_chr1_-_40562915 AK075496 AK312287 U44772	53004	-	TSC_hg19_v1_chr1_-_40562918 BC008426	53011	-	AK302232 AK310799 TSC_hg19_v1_chr1_-_40562925	53019	-	L12168|CAP1|10487|CAP, adenylate cyclase-associated protein 1 (yeast)##BC013963|CAP1|10487|CAP, adenylate cyclase-associated protein 1 (yeast)##AK295396|CAP1|10487|CAP, adenylate cyclase-associated protein 1 (yeast)##AK298110|CAP1|10487|CAP, adenylate cyclase-associated protein 1 (yeast)##M98474|CAP1|10487|CAP, adenylate cyclase-associated protein 1 (yeast)##AK298094|CAP1|10487|CAP, adenylate cyclase-associated protein 1 (yeast)##CR542053|PPT1|5538|palmitoyl-protein thioesterase 1##AK301682|PPT1|5538|palmitoyl-protein thioesterase 1##AK075496|PPT1|5538|palmitoyl-protein thioesterase 1##AK312287|PPT1|5538|palmitoyl-protein thioesterase 1##U44772|PPT1|5538|palmitoyl-protein thioesterase 1##BC008426|PPT1|5538|palmitoyl-protein thioesterase 1##AK302232|PPT1|5538|palmitoyl-protein thioesterase 1##AK310799|PPT1|5538|palmitoyl-protein thioesterase 1	0.073689	0.0	
chr19	49314683	49314863	reg1003259.p3	6.215	+	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	-525	-	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-55355	+	D87935 D87936 D87937 NM_000148	-56127	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	25001	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	25150	-	BC064601 AB208908 BC025259 AY007233 BC024157 NM_001161354 NM_020904	57023	-	AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC064601|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AB208908|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC025259|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AY007233|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC024157|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_001161354|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_020904|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	0.999414	0.0	
chr18	8696940	8697052	reg1006135.p1	6.214	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	-87250	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	-87560	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-750090	+	AK131528 NM_015210	20372	+	AB384528 TSC_hg19_v1_chr18_+_8718600	21528	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	405626	+	BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	1.984911	0.989014	CTCF.p2:-60:0.989	denovo_WM_7:64:0.213	denovo_WM_7:65:0.370	denovo_WM_7:66:0.373
chr2	158280009	158280121	reg1007291.p2	6.214	+	NM_001009959 AK296477	-95909	-	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	-97781	-	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	-165772	+	L06633 AB528875 CU690346 AF068836 BC036449 TSC_hg19_v1_chr2_-_158300602 AK312753 NM_004288	20499	-	TSC_hg19_v1_chr2_-_158454049 AF525679 NM_001111031	174010	-	AB590288 CU692676 DQ895570 EU176205 AF525680 AF525681 AY127050 TSC_hg19_v1_chr2_-_158485239	205133	-	NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##L06633|CYTIP|9595|cytohesin 1 interacting protein##AF068836|CYTIP|9595|cytohesin 1 interacting protein##BC036449|CYTIP|9595|cytohesin 1 interacting protein##AK312753|CYTIP|9595|cytohesin 1 interacting protein##NM_004288|CYTIP|9595|cytohesin 1 interacting protein##AF525679|ACVR1C|130399|activin A receptor, type IC##NM_001111031|ACVR1C|130399|activin A receptor, type IC##DQ895570|ACVR1C|130399|activin A receptor, type IC##EU176205|ACVR1C|130399|activin A receptor, type IC##AF525680|ACVR1C|130399|activin A receptor, type IC##AF525681|ACVR1C|130399|activin A receptor, type IC##AY127050|ACVR1C|130399|activin A receptor, type IC	0.0	0.0	
chr3	125314455	125314602	reg1001512.p1	6.214	+	TSC_hg19_v1_chr3_-_125314371 NM_022776	-155	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	-75475	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	-75497	-	TSC_hg19_v1_chr3_+_125635451 BC032772 BC041080	320928	+	BC073816 NM_001015050 NM_001195223	341355	-	AF231410 NM_001012337 BC141849 AK302014	373526	+	NM_022776|OSBPL11|114885|oxysterol binding protein-like 11##NM_003794|SNX4|8723|sorting nexin 4##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##BC032772|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC041080|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC073816|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001015050|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001195223|ALG1L|200810|asparagine-linked glycosylation 1-like##AF231410|ROPN1B|152015|rhophilin associated tail protein 1B##NM_001012337|ROPN1B|152015|rhophilin associated tail protein 1B##BC141849|ROPN1B|152015|rhophilin associated tail protein 1B	0.0	0.035708	
chr4	39613660	39613819	reg1007097.p2	6.214	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-84113	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-84564	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-84732	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	26817	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	86065	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	365599	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.987025	0.0	denovo_WM_7:2:0.922
chr4	40319252	40319432	reg1005211.p4	6.214	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-120701	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-260810	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-339749	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	18103	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	197242	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	198616	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.0	0.013569	
chr3	49341575	49341726	reg1007155.p3	6.213	+	BC032616 CU687502 CU691014 AK125642 BC061697 BC053629 NM_198562	-27256	-	AK303033 NM_001135197 BC015057 AK058049	-104690	+	BC036202 NM_178173	-105790	+	TSC_hg19_v1_chr3_-_49377456 AF017306	35797	-	AF017305 U20657 TSC_hg19_v1_chr3_-_49377473 AK222725 AK223292 BC068017	35818	-	TSC_hg19_v1_chr3_-_49377482 AK291795	35830	-	BC032616|C3orf62|375341|chromosome 3 open reading frame 62##AK125642|C3orf62|375341|chromosome 3 open reading frame 62##BC061697|C3orf62|375341|chromosome 3 open reading frame 62##BC053629|C3orf62|375341|chromosome 3 open reading frame 62##NM_198562|C3orf62|375341|chromosome 3 open reading frame 62##AK303033|CCDC36|339834|coiled-coil domain containing 36##NM_001135197|CCDC36|339834|coiled-coil domain containing 36##BC015057|CCDC36|339834|coiled-coil domain containing 36##AK058049|CCDC36|339834|coiled-coil domain containing 36##BC036202|CCDC36|339834|coiled-coil domain containing 36##NM_178173|CCDC36|339834|coiled-coil domain containing 36##AF017306|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AF017305|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##U20657|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK222725|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK223292|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##BC068017|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK291795|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)	0.0	0.0	
chr8	70650533	70650713	reg1006138.p1	6.213	+	AY101175 TSC_hg19_v1_chr8_+_70405081 AK055607 BX571746	-245534	+	NM_001128205 NM_001128206 TSC_hg19_v1_chr8_+_70405045	-245584	+	TSC_hg19_v1_chr8_+_70379077 AK307951	-271543	+	BC137424 BC144618 NM_001146009	94780	-	AK022760 NM_001146008	95001	-	AK308488 AF205075 AK096879 NM_030958	96626	-	AY101175|SULF1|23213|sulfatase 1##AK055607|SULF1|23213|sulfatase 1##BX571746|SULF1|23213|sulfatase 1##NM_001128205|SULF1|23213|sulfatase 1##NM_001128206|SULF1|23213|sulfatase 1##AK307951|SULF1|23213|sulfatase 1##BC137424|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC144618|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146009|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK022760|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146008|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1	1.025602	0.0	denovo_WM_7:1:0.705
chr12	10515452	10515614	reg1007476.p2	6.212	+	NM_002262 NM_007334 AF498040 AF498041 AY327501 U30610 BC028009 AB009597 AJ000001	-55001	+	AK291506 AY227806 NM_001114396	-58487	+	AF287012 TSC_hg19_v1_chr12_+_10365506 AF087847 AK303581 AK315418 AK074195 BC028315 NM_031412 BC009309 AL136676 BX648781 BC008891	-150057	+	BC039836 AK226161 AK292059 NM_007360	27101	-	TSC_hg19_v1_chr12_-_10562143 AK292020 AK310717 AB590270 AF350018 AF350019 CU676066 DQ891978 DQ895169 BC017784 U96845 AJ001683 NM_013431	46715	-	AF461811 NM_001199805	47211	-	NM_002262|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_007334|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498040|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498041|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY327501|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##U30610|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC028009|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AB009597|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AJ000001|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AK291506|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY227806|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_001114396|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF287012|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AF087847|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK303581|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK315418|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK074195|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC028315|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_031412|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC009309|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AL136676|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BX648781|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC008891|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC039836|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK226161|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292059|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##NM_007360|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292020|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##AK310717|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##AF350018|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AF350019|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##DQ891978|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##DQ895169|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##BC017784|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##U96845|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AJ001683|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##NM_013431|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AF461811|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##NM_001199805|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough	0.999938	0.0	
chr16	15734942	15735116	reg1007334.p1	6.211	+	BC023603 NM_001142469	-138907	+	AK057180 NM_033201 TSC_hg19_v1_chr16_+_15528363 AK293431 BC008967	-206629	+	TSC_hg19_v1_chr16_+_15489637 AK096918 AK293380 BC061514	-245379	+	BC137165 BC137170 BC144514 BC144515 TSC_hg19_v1_chr16_-_15737004 AK302667 AK095840 BC064914 NM_001184998 NM_001184999 NM_014647	1964	-	BC033900 NM_001143979	2094	+	NM_017668 BC001421 TSC_hg19_v1_chr16_+_15744101 AK000108 AK025815	9078	+	BC023603|C16orf45|89927|chromosome 16 open reading frame 45##NM_001142469|C16orf45|89927|chromosome 16 open reading frame 45##AK057180|C16orf45|89927|chromosome 16 open reading frame 45##NM_033201|C16orf45|89927|chromosome 16 open reading frame 45##AK293431|C16orf45|89927|chromosome 16 open reading frame 45##BC008967|C16orf45|89927|chromosome 16 open reading frame 45##AK096918|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK293380|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC061514|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC137165|KIAA0430|9665|KIAA0430##BC137170|KIAA0430|9665|KIAA0430##BC144514|KIAA0430|9665|KIAA0430##BC144515|KIAA0430|9665|KIAA0430##AK302667|KIAA0430|9665|KIAA0430##AK095840|KIAA0430|9665|KIAA0430##BC064914|KIAA0430|9665|KIAA0430##NM_001184998|KIAA0430|9665|KIAA0430##NM_001184999|KIAA0430|9665|KIAA0430##NM_014647|KIAA0430|9665|KIAA0430##BC033900|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##NM_001143979|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##NM_017668|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC001421|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK000108|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK025815|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)	0.296077	0.0	
chr3	105525272	105525452	reg1006229.p1	6.211	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-104308	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-439540	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-439782	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	62445	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1434117	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1434230	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.983176	0.0	denovo_WM_7:-29:0.492	denovo_WM_7:-30:0.492
chr3	124370410	124370536	reg1006737.p1	6.211	+	NM_007064 TSC_hg19_v1_chr3_+_124303522 BC058015 AB011422	-66945	+	TSC_hg19_v1_chr3_+_124103674 AK131379	-266850	+	AK314126 AK311154 NM_001024660 NM_003947 AK311581 U94190 BC037924 AB384665	-556868	+	J03626 NM_000373 TSC_hg19_v1_chr3_+_124449256	78766	+	TSC_hg19_v1_chr3_+_124449303 AL080099 AB062285 BC000364 BC007511 EU832341 EU832426 EU921886 EU921887 EU921888 EU921889 EU921890 EU921891 EU921892 EU921893 EU921894 EU921895 AK291306 D86227 D86228 D86230 CR456787 M36661	78843	+	TSC_hg19_v1_chr3_-_124605863 AB587397 DQ892778 DQ896025 M35011 AK315429 J05633	235393	-	NM_007064|KALRN|8997|kalirin, RhoGEF kinase##BC058015|KALRN|8997|kalirin, RhoGEF kinase##AB011422|KALRN|8997|kalirin, RhoGEF kinase##AK131379|KALRN|8997|kalirin, RhoGEF kinase##AK314126|KALRN|8997|kalirin, RhoGEF kinase##AK311154|KALRN|8997|kalirin, RhoGEF kinase##NM_001024660|KALRN|8997|kalirin, RhoGEF kinase##NM_003947|KALRN|8997|kalirin, RhoGEF kinase##AK311581|KALRN|8997|kalirin, RhoGEF kinase##U94190|KALRN|8997|kalirin, RhoGEF kinase##BC037924|KALRN|8997|kalirin, RhoGEF kinase##J03626|UMPS|7372|uridine monophosphate synthetase##NM_000373|UMPS|7372|uridine monophosphate synthetase##AL080099|UMPS|7372|uridine monophosphate synthetase##AB062285|UMPS|7372|uridine monophosphate synthetase##BC000364|UMPS|7372|uridine monophosphate synthetase##BC007511|UMPS|7372|uridine monophosphate synthetase##EU832341|UMPS|7372|uridine monophosphate synthetase##EU832426|UMPS|7372|uridine monophosphate synthetase##EU921886|UMPS|7372|uridine monophosphate synthetase##EU921887|UMPS|7372|uridine monophosphate synthetase##EU921888|UMPS|7372|uridine monophosphate synthetase##EU921889|UMPS|7372|uridine monophosphate synthetase##EU921890|UMPS|7372|uridine monophosphate synthetase##EU921891|UMPS|7372|uridine monophosphate synthetase##EU921892|UMPS|7372|uridine monophosphate synthetase##EU921893|UMPS|7372|uridine monophosphate synthetase##EU921894|UMPS|7372|uridine monophosphate synthetase##EU921895|UMPS|7372|uridine monophosphate synthetase##AK291306|UMPS|7372|uridine monophosphate synthetase##D86227|UMPS|7372|uridine monophosphate synthetase##D86228|UMPS|7372|uridine monophosphate synthetase##D86230|UMPS|7372|uridine monophosphate synthetase##CR456787|UMPS|7372|uridine monophosphate synthetase##M36661|UMPS|7372|uridine monophosphate synthetase##DQ892778|ITGB5|3693|integrin, beta 5##DQ896025|ITGB5|3693|integrin, beta 5##M35011|ITGB5|3693|integrin, beta 5##AK315429|ITGB5|3693|integrin, beta 5##J05633|ITGB5|3693|integrin, beta 5	1.976087	0.0	denovo_WM_7:0:0.985	denovo_WM_7:19:0.237	denovo_WM_7:20:0.237	denovo_WM_7:21:0.237	denovo_WM_7:22:0.237
chr3	46954568	46954672	reg1003975.p1	6.211	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-30878	+	BC112221 BC112247 NM_000316 U17418 X68596	-35371	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-49695	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	63625	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	66627	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	74850	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.995036	0.0	denovo_WM_7:-1:0.247	denovo_WM_7:-2:0.704
chr1	90146756	90146871	reg1006834.p1	6.210	+	TSC_hg19_v1_chr1_+_90098707 AK127881 AB081509 BC103929 BC113973	-48049	+	NM_032270 TSC_hg19_v1_chr1_+_90098643	-48168	+	TSC_hg19_v1_chr1_+_90098630 BC036122	-48180	+	TSC_hg19_v1_chr1_+_90286586 NM_001134479	139714	+	TSC_hg19_v1_chr1_+_90286603 AK092238 AX747423	139786	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	140645	+	AK127881|LRRC8C|84230|leucine rich repeat containing 8 family, member C##AB081509|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC103929|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC113973|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_032270|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC036122|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_001134479|LRRC8D|55144|leucine rich repeat containing 8 family, member D##AK092238|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D	0.0	0.0	
chr1	93643116	93643270	reg1005165.p1	6.210	+	TSC_hg19_v1_chr1_+_93544836 NM_001164391 NM_001164392 NM_001164393 NM_007358 AK290318 AK302900 AJ010014 AK302776 AF086908 BC010013 BC001897	-98360	+	TSC_hg19_v1_chr1_-_93427020 BC070342 NM_001006605 NM_001252269 NM_001252270 NM_001252273	-216155	-	TSC_hg19_v1_chr1_-_93399531 BX648424	-243601	-	AY359039 BC016556 AF151858 TSC_hg19_v1_chr1_-_93645971 AK293308 BC016365 AK312787 CR936808 AK125882	2794	-	BC070051 NM_001167830 NM_016040	3052	-	TSC_hg19_v1_chr1_+_93646280 BC056667 NM_206886	3088	+	NM_001164391|MTF2|22823|metal response element binding transcription factor 2##NM_001164392|MTF2|22823|metal response element binding transcription factor 2##NM_001164393|MTF2|22823|metal response element binding transcription factor 2##NM_007358|MTF2|22823|metal response element binding transcription factor 2##AK290318|MTF2|22823|metal response element binding transcription factor 2##AK302900|MTF2|22823|metal response element binding transcription factor 2##AJ010014|MTF2|22823|metal response element binding transcription factor 2##AK302776|MTF2|22823|metal response element binding transcription factor 2##AF086908|MTF2|22823|metal response element binding transcription factor 2##BC010013|MTF2|22823|metal response element binding transcription factor 2##BC001897|MTF2|22823|metal response element binding transcription factor 2##BC070342|FAM69A|388650|family with sequence similarity 69, member A##NM_001006605|FAM69A|388650|family with sequence similarity 69, member A##NM_001252269|FAM69A|388650|family with sequence similarity 69, member A##NM_001252270|FAM69A|388650|family with sequence similarity 69, member A##NM_001252273|FAM69A|388650|family with sequence similarity 69, member A##AY359039|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016556|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AF151858|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK293308|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016365|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK312787|TMED5|50999|transmembrane emp24 protein transport domain containing 5##CR936808|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK125882|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC070051|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_001167830|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_016040|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC056667|CCDC18|343099|coiled-coil domain containing 18##NM_206886|CCDC18|343099|coiled-coil domain containing 18	1.475904	0.0	denovo_WM_7:-28:0.201	denovo_WM_7:-43:0.260
chr1	241695000	241695134	reg1003478.p2	6.209	+	AK312415 TSC_hg19_v1_chr1_-_241683076 NM_000143	-11987	-	TSC_hg19_v1_chr1_-_241683023 BT009839 AB590519 EU176358 BC017444 BC003108 U48857 U59309	-12035	-	TSC_hg19_v1_chr1_-_241520469 BC022009 NM_002924	-174595	-	NM_003679 AK310937 BC005297 AK291558 AF056032 Y13153 CU675097	520	+	BC117360 NM_001821 X64728	104099	-	TSC_hg19_v1_chr1_-_241803669 BC051900 AF140242 BC073872 BC062622 AF303588 BC036773 BC026242 NM_014322	108408	-	AK312415|FH|2271|fumarate hydratase##NM_000143|FH|2271|fumarate hydratase##BT009839|FH|2271|fumarate hydratase##EU176358|FH|2271|fumarate hydratase##BC017444|FH|2271|fumarate hydratase##BC003108|FH|2271|fumarate hydratase##U48857|FH|2271|fumarate hydratase##U59309|FH|2271|fumarate hydratase##BC022009|RGS7|6000|regulator of G-protein signaling 7##NM_002924|RGS7|6000|regulator of G-protein signaling 7##NM_003679|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##AK310937|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##BC005297|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##AK291558|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##AF056032|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##Y13153|KMO|8564|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)##BC117360|CHML|1122|choroideremia-like (Rab escort protein 2)##NM_001821|CHML|1122|choroideremia-like (Rab escort protein 2)##X64728|CHML|1122|choroideremia-like (Rab escort protein 2)##BC051900|OPN3|23596|opsin 3##AF140242|OPN3|23596|opsin 3##BC073872|OPN3|23596|opsin 3##BC062622|OPN3|23596|opsin 3##AF303588|OPN3|23596|opsin 3##BC036773|OPN3|23596|opsin 3##NM_014322|OPN3|23596|opsin 3	0.084507	0.0	
chr16	74614952	74615130	reg1007385.p1	6.209	+	AK074773 AY358373 AK293982 NM_001011880 AL833339 AF448856	-159701	-	TSC_hg19_v1_chr16_-_74402059 BC037579 AK096768	-212943	-	TSC_hg19_v1_chr16_-_74401811 AK124154	-213229	-	TSC_hg19_v1_chr16_-_74640996 BC040133 U64791 BC031836	25914	-	TSC_hg19_v1_chr16_-_74641004 AK027032 AK304156 U28811 BC060822	25963	-	TSC_hg19_v1_chr16_-_74641016 NM_001145666 NM_001145667 NM_012201	25986	-	AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##AY358373|CLEC18B|497190|C-type lectin domain family 18, member B##AK293982|CLEC18B|497190|C-type lectin domain family 18, member B##NM_001011880|CLEC18B|497190|C-type lectin domain family 18, member B##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##BC037579|LOC283922|283922|pyruvate dehydrogenase phosphatase regulatory subunit pseudogene##AK096768|LOC283922|283922|pyruvate dehydrogenase phosphatase regulatory subunit pseudogene##BC040133|GLG1|2734|golgi glycoprotein 1##U64791|GLG1|2734|golgi glycoprotein 1##BC031836|GLG1|2734|golgi glycoprotein 1##AK027032|GLG1|2734|golgi glycoprotein 1##AK304156|GLG1|2734|golgi glycoprotein 1##U28811|GLG1|2734|golgi glycoprotein 1##BC060822|GLG1|2734|golgi glycoprotein 1##NM_001145666|GLG1|2734|golgi glycoprotein 1##NM_001145667|GLG1|2734|golgi glycoprotein 1##NM_012201|GLG1|2734|golgi glycoprotein 1	0.0	0.0	
chr4	77996248	77996413	reg1008722.p1	6.209	+	AK124592 CR627457 TSC_hg19_v1_chr4_+_77954068	-42325	+	TSC_hg19_v1_chr4_+_77871005 AK001711 AL110300 AK302700 BC063615 GU727629 AB587498	-125330	+	TSC_hg19_v1_chr4_+_77870908 BC064934	-125418	+	TSC_hg19_v1_chr4_-_77997145 BC000420 BC004975 NM_006835 AB209766 AK301111 AK312632	822	-	TSC_hg19_v1_chr4_+_78078359 NM_004354 AK292029 BC032518	82031	+	TSC_hg19_v1_chr4_+_78078398 U47414	82130	+	AK124592|SEPT11|55752|septin 11##AK001711|SEPT11|55752|septin 11##AL110300|SEPT11|55752|septin 11##AK302700|SEPT11|55752|septin 11##BC063615|SEPT11|55752|septin 11##GU727629|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11##BC000420|CCNI|10983|cyclin I##BC004975|CCNI|10983|cyclin I##NM_006835|CCNI|10983|cyclin I##AB209766|CCNI|10983|cyclin I##AK301111|CCNI|10983|cyclin I##AK312632|CCNI|10983|cyclin I##NM_004354|CCNG2|901|cyclin G2##AK292029|CCNG2|901|cyclin G2##BC032518|CCNG2|901|cyclin G2##U47414|CCNG2|901|cyclin G2	0.0	0.0	
chr9	132083128	132083269	reg1006369.p2	6.209	+	TSC_hg19_v1_chr9_-_131940541 NM_203434	-142658	-	TSC_hg19_v1_chr9_-_131940534 BC064028	-142691	-	AK310328 TSC_hg19_v1_chr9_+_131902359	-180888	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	97	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	168156	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	168243	+	NM_203434|IER5L|389792|immediate early response 5-like##BC064028|IER5L|389792|immediate early response 5-like##AK310328|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190	0.099036	0.0	
chr14	31776965	31777119	reg1006479.p2	6.208	+	TSC_hg19_v1_chr14_-_31676920 BC016947	-100107	-	TSC_hg19_v1_chr14_-_31676690 NM_015382	-100357	-	BC126221 BC132673 BC143933 AK314041 TSC_hg19_v1_chr14_-_31495586 AK290229 U17989 NM_001083893 NM_014574	-281472	-	BC062720 TSC_hg19_v1_chr14_-_31889757 NM_015473	112719	-	TSC_hg19_v1_chr14_-_31926633 BC010618 AK302829 AK055367 NM_080664	149633	-	GQ981321 GQ981322 NM_001197184	180108	-	NM_015382|HECTD1|25831|HECT domain containing 1##BC126221|STRN3|29966|striatin, calmodulin binding protein 3##BC132673|STRN3|29966|striatin, calmodulin binding protein 3##BC143933|STRN3|29966|striatin, calmodulin binding protein 3##AK314041|STRN3|29966|striatin, calmodulin binding protein 3##AK290229|STRN3|29966|striatin, calmodulin binding protein 3##U17989|STRN3|29966|striatin, calmodulin binding protein 3##NM_001083893|STRN3|29966|striatin, calmodulin binding protein 3##NM_014574|STRN3|29966|striatin, calmodulin binding protein 3##BC062720|HEATR5A|25938|HEAT repeat containing 5A##NM_015473|HEATR5A|25938|HEAT repeat containing 5A##BC010618|C14orf126|112487|chromosome 14 open reading frame 126##AK055367|C14orf126|112487|chromosome 14 open reading frame 126##NM_080664|C14orf126|112487|chromosome 14 open reading frame 126##GQ981321|GPR33|2856|G protein-coupled receptor 33 (gene/pseudogene)##GQ981322|GPR33|2856|G protein-coupled receptor 33 (gene/pseudogene)##NM_001197184|GPR33|2856|G protein-coupled receptor 33 (gene/pseudogene)	0.0	0.0	
chr2	42329250	42329430	reg1006237.p2	6.208	+	AB528999 TSC_hg19_v1_chr2_+_42275979	-53379	+	TSC_hg19_v1_chr2_+_42275160 NM_138370	-54208	+	AK124893 NM_001242815	-148398	-	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	67235	+	AF127788 BT007371 CR542208 CU675543 DQ890566 DQ893729 TSC_hg19_v1_chr2_-_42588354 AB007618 BC005251 BC007095 NM_004718	258993	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	391218	-	NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4##AF127788|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BT007371|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##CR542208|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ890566|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ893729|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB007618|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC005251|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC007095|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##NM_004718|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3	0.012792	0.0	
chr5	126115977	126116157	reg1005236.p2	6.208	+	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-2943	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-3185	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	-3236	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	250108	-	NM_178450	250372	-	AK126569 NM_001164478 NM_001164479	293110	-	DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63	0.0	0.041586	
chr7	74002213	74002393	reg1007038.p2	6.208	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-133868	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-133995	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-134139	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	69718	+	TSC_hg19_v1_chr7_+_74072046 BC070484	69741	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	69819	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.0	0.0	
chr9	132801913	132802051	reg1005491.p1	6.208	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-204217	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-204260	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-204298	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	3372	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	3506	-	BC039728 NM_001136557 NM_001136558 NM_020960	14002	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	1.294768	0.0	denovo_WM_7:-16:0.309	denovo_WM_7:-17:0.309	denovo_WM_7:-18:0.309
chr1	235491553	235491719	reg1007306.p2	6.207	+	TSC_hg19_v1_chr1_-_235491495 AF214114 AK057552 NM_016374 NM_031371	-124	-	TSC_hg19_v1_chr1_-_235491491 BC048959	-145	-	BC130418 BC143719 TSC_hg19_v1_chr1_-_235491484 BC062536 BX648820	-169	-	NM_001037277 TSC_hg19_v1_chr1_+_235491884 AF057698 AK025139 BC005252 AK293278 AB019036 AB016043 AF125394	225	+	AK309831 TSC_hg19_v1_chr1_+_235492306	659	+	NM_001079515 NM_003193 TSC_hg19_v1_chr1_+_235530744 AK296185 AK298050	39107	+	AF214114|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##AK057552|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_016374|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_031371|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC048959|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC130418|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC143719|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC062536|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BX648820|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001037277|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF057698|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK025139|GGPS1|9453|geranylgeranyl diphosphate synthase 1##BC005252|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK293278|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB019036|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB016043|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF125394|GGPS1|9453|geranylgeranyl diphosphate synthase 1##NM_001079515|TBCE|6905|tubulin folding cofactor E##NM_003193|TBCE|6905|tubulin folding cofactor E##AK296185|TBCE|6905|tubulin folding cofactor E##AK298050|TBCE|6905|tubulin folding cofactor E	0.0	0.0	
chr16	34828511	34828691	reg1006276.p2	6.207	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-1566468	+	AL133588 NM_016212	-1567087	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-1623003	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	11826671	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	11826705	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	11894461	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	1.978641	0.0	denovo_WM_7:-24:0.529	denovo_WM_7:-25:0.390	denovo_WM_7:-39:0.485	denovo_WM_7:-40:0.470
chr19	41768285	41768415	reg1006031.p1	6.207	+	TSC_hg19_v1_chr19_+_41725293 AK310881 AB385214 DQ894117	-43062	+	TSC_hg19_v1_chr19_+_41725261 S65125 X57019	-43089	+	TSC_hg19_v1_chr19_+_41725146 M76125	-43204	+	TSC_hg19_v1_chr19_+_41768461 NM_144732 AK225850 AK023006 AK308078	117	+	TSC_hg19_v1_chr19_+_41770226 NM_007040 AJ007509	1799	+	TSC_hg19_v1_chr19_+_41770281 AK022863 AK127057 AK291762 AK308156	1927	+	AK310881|AXL|558|AXL receptor tyrosine kinase##DQ894117|AXL|558|AXL receptor tyrosine kinase##S65125|AXL|558|AXL receptor tyrosine kinase##X57019|AXL|558|AXL receptor tyrosine kinase##M76125|AXL|558|AXL receptor tyrosine kinase##NM_144732|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK225850|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK023006|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308078|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##NM_007040|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AJ007509|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK022863|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK127057|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK291762|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##AK308156|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1	0.0	0.194013	
chr9	82186899	82187079	reg1004874.p1	6.207	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-103	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	-1274931	+	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	-1335959	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	535	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	696	+	BC010100 NM_005077	2116606	-	NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	0.153257	0.0	
chr5	58187669	58187849	reg1007042.p2	6.206	+	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-308840	+	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	-400465	+	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	-431823	-	BC036319 NM_001197223	107999	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	147619	-	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	384171	-	AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.997719	0.976184	CTCF.p2:-15:0.976	denovo_WM_7:58:0.831
chr12	11903410	11903528	reg1006013.p2	6.205	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	-100483	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	-100695	+	TSC_hg19_v1_chr12_+_11802659 AK289441	-100796	+	AK292995 TSC_hg19_v1_chr12_+_12223872 BC025778 NM_138723 AK223415	320414	+	AF281254 AF281255 NM_030766 NM_138722	320932	+	AK074543 TSC_hg19_v1_chr12_-_12291395	387915	-	U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##AK289441|ETV6|2120|ets variant 6##AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281254|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281255|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_030766|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138722|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK074543|LRP6|4040|low density lipoprotein receptor-related protein 6	0.288059	0.0	denovo_WM_7:-27:0.266
chr2	176949082	176949244	reg1006146.p2	6.205	+	NM_001080458	-474	-	TSC_hg19_v1_chr2_-_176866988 AB051502 AK056532 BC110329 BC105132 BC105134 BC143681 BC143683 AK302833 BC064661 NM_030650 CR936742	-82188	-	CR407601 EU832770 GQ129314 BC106881 U09813 NM_001002258 TSC_hg19_v1_chr2_-_176046438 AK311999 NM_001190329 NM_001689	-902859	-	TSC_hg19_v1_chr2_+_176957451 NM_000523 AB463753	8381	+	BC069088 BC121103 BC121104 NM_021193	15366	+	TSC_hg19_v1_chr2_+_176969236 AK309681	20078	+	NM_001080458|EVX2|344191|even-skipped homeobox 2##AB051502|KIAA1715|80856|KIAA1715##AK056532|KIAA1715|80856|KIAA1715##BC110329|KIAA1715|80856|KIAA1715##BC105132|KIAA1715|80856|KIAA1715##BC105134|KIAA1715|80856|KIAA1715##BC143681|KIAA1715|80856|KIAA1715##BC143683|KIAA1715|80856|KIAA1715##AK302833|KIAA1715|80856|KIAA1715##BC064661|KIAA1715|80856|KIAA1715##NM_030650|KIAA1715|80856|KIAA1715##CR936742|KIAA1715|80856|KIAA1715##CR407601|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##EU832770|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##GQ129314|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC106881|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##U09813|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001002258|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##AK311999|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001190329|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001689|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_000523|HOXD13|3239|homeobox D13##BC069088|HOXD12|3238|homeobox D12##BC121103|HOXD12|3238|homeobox D12##BC121104|HOXD12|3238|homeobox D12##NM_021193|HOXD12|3238|homeobox D12	1.980273	0.0	denovo_WM_7:-5:0.911	denovo_WM_7:9:0.921
chr5	14810116	14810279	reg1006855.p2	6.205	+	TSC_hg19_v1_chr5_+_14664826 BC015392	-145356	+	TSC_hg19_v1_chr5_+_14664772 NM_138348	-145421	+	AK123396 TSC_hg19_v1_chr5_-_14664742	-145470	-	DQ892588 DQ895806 AK222631 AK315012 BC014526 AF274753 AY358503 TSC_hg19_v1_chr5_-_14871888 AL833238 AB046801 BC009835 NM_054027	61658	-	TSC_hg19_v1_chr5_+_15500291 AB020647 NM_012304	690102	+	BC136424 TSC_hg19_v1_chr5_+_15500549	690347	+	BC015392|FAM105B|90268|family with sequence similarity 105, member B##NM_138348|FAM105B|90268|family with sequence similarity 105, member B##AK123396|LOC728178|728178|uncharacterized LOC728178##DQ892588|ANKH|56172|ankylosis, progressive homolog (mouse)##DQ895806|ANKH|56172|ankylosis, progressive homolog (mouse)##AK222631|ANKH|56172|ankylosis, progressive homolog (mouse)##AK315012|ANKH|56172|ankylosis, progressive homolog (mouse)##BC014526|ANKH|56172|ankylosis, progressive homolog (mouse)##AF274753|ANKH|56172|ankylosis, progressive homolog (mouse)##AY358503|ANKH|56172|ankylosis, progressive homolog (mouse)##AB046801|ANKH|56172|ankylosis, progressive homolog (mouse)##BC009835|ANKH|56172|ankylosis, progressive homolog (mouse)##NM_054027|ANKH|56172|ankylosis, progressive homolog (mouse)##AB020647|FBXL7|23194|F-box and leucine-rich repeat protein 7##NM_012304|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC136424|FBXL7|23194|F-box and leucine-rich repeat protein 7	0.993846	0.0	denovo_WM_7:79:0.981
chr8	67447875	67448055	reg1007321.p2	6.205	+	NM_152765	-42475	+	NM_144650 AY033237 AK056992 AK300881 BC047492 BC064634 AK293530 AK300243 AK294114 BC110290	-103233	+	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	-106659	+	BC032233 NM_001080416 NM_001144755 TSC_hg19_v1_chr8_-_67525502	77509	-	AM392649 AM393766 TSC_hg19_v1_chr8_-_67579266	131266	-	TSC_hg19_v1_chr8_-_67579368 BC118917 AL832606	131401	-	NM_152765|C8orf46|254778|chromosome 8 open reading frame 46##NM_144650|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AY033237|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK056992|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300881|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC047492|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC064634|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK293530|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300243|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK294114|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC110290|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC032233|LOC645895|645895|uncharacterized LOC645895##NM_001080416|MYBL1|4603|v-myb myeloblastosis viral oncogene homolog (avian)-like 1##NM_001144755|MYBL1|4603|v-myb myeloblastosis viral oncogene homolog (avian)-like 1##AM392649|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##AM393766|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##BC118917|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##AL832606|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1	0.993835	0.0	denovo_WM_7:0:0.410	denovo_WM_7:-1:0.408
chr5	126099106	126099263	reg1002533.p3	6.204	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-131769	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-162552	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-168328	-	NM_005573 BC052951	13131	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	13647	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	13698	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.995747	0.0	
chr5	88579915	88580093	reg1006813.p2	6.204	+	AL833268 AL833274 NM_001131005 NM_001193347	-380110	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-394740	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-394884	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	1125535	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1190178	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1190574	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	1.563714	0.0	denovo_WM_7:19:0.335	denovo_WM_7:34:0.339	denovo_WM_7:36:0.230
chr11	85904596	85904776	reg1005674.p2	6.203	+	AK300275 NM_001206947	-123776	-	TSC_hg19_v1_chr11_-_85780127 AB210017 NM_001008660 NM_001206946 NM_007166 AK291414	-124562	-	TSC_hg19_v1_chr11_-_85780088 BC064357	-124591	-	TSC_hg19_v1_chr11_+_85955830 NM_003797 NM_152991 AK292120 AF080227	51173	+	AF070418 TSC_hg19_v1_chr11_+_85956058	51363	+	AF099032 U90651 TSC_hg19_v1_chr11_+_85956254	51531	+	AK300275|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206947|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AB210017|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001008660|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206946|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_007166|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AK291414|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC064357|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_003797|EED|8726|embryonic ectoderm development##NM_152991|EED|8726|embryonic ectoderm development##AK292120|EED|8726|embryonic ectoderm development##AF080227|EED|8726|embryonic ectoderm development##AF070418|EED|8726|embryonic ectoderm development##AF099032|EED|8726|embryonic ectoderm development##U90651|EED|8726|embryonic ectoderm development	0.0	0.47827	CTCF.p2:74:0.478
chr16	66623479	66623659	reg1006344.p1	6.203	+	AY862139 NM_001199317 NM_144673 AF479260 BC025354 AK098598 CU692974 DQ892836 EU176735	-10140	+	NM_181269 NM_181270 NM_181271 NM_181272 NM_181283 NM_181296 AY174118 AY174119 AY174120 AY174121 AY174122 AY174123 AY174124 AY174125 AY174126 AY174127 AY174128 AY174129 AY174130 AY174131 AY174132 AY174133 TSC_hg19_v1_chr16_+_66600302 BC057852 NM_052999 NM_181268 BC018586	-23217	+	TSC_hg19_v1_chr16_+_66586551 AB590157 DQ893388 DQ896708	-37001	+	AK056324 TSC_hg19_v1_chr16_+_66638053	14427	+	TSC_hg19_v1_chr16_+_66638261 NM_144601 AF479813	14678	+	TSC_hg19_v1_chr16_+_66638606 BC047701 NM_181553 BC036042 BC040227	15005	+	AY862139|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_001199317|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_144673|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##AF479260|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##BC025354|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##AK098598|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##DQ892836|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##EU176735|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_181269|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181270|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181271|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181272|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181283|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181296|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174118|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174119|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174120|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174121|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174122|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174123|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174124|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174125|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174126|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174127|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174128|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174129|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174130|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174131|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174132|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174133|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##BC057852|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_052999|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181268|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##BC018586|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##DQ893388|CKLF|51192|chemokine-like factor##DQ896708|CKLF|51192|chemokine-like factor##AK056324|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##NM_144601|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##AF479813|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC047701|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##NM_181553|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC036042|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC040227|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3	0.0	0.023938	
chr8	41160593	41160670	reg1003076.p2	6.202	+	BC019598 TSC_hg19_v1_chr8_-_40755346 AK023904 NM_001135731 NM_024645	-405294	-	BC021672 NM_020130 BC020623 TSC_hg19_v1_chr8_+_40011000 AF268037 AK026240 EU832636 EU832712	-1149613	+	AK128691 NM_194294	-1368158	+	TSC_hg19_v1_chr8_-_41166991 BC004466 AF017987 AF001900 AF056087 AK293090 BC036503 NM_003012	6399	-	TSC_hg19_v1_chr8_+_41348077 NM_001174124 NM_016099	187442	+	TSC_hg19_v1_chr8_+_41348100 AK026613	187468	+	BC019598|ZMAT4|79698|zinc finger, matrin-type 4##AK023904|ZMAT4|79698|zinc finger, matrin-type 4##NM_001135731|ZMAT4|79698|zinc finger, matrin-type 4##NM_024645|ZMAT4|79698|zinc finger, matrin-type 4##BC021672|C8orf4|56892|chromosome 8 open reading frame 4##NM_020130|C8orf4|56892|chromosome 8 open reading frame 4##BC020623|C8orf4|56892|chromosome 8 open reading frame 4##AF268037|C8orf4|56892|chromosome 8 open reading frame 4##AK026240|C8orf4|56892|chromosome 8 open reading frame 4##EU832636|C8orf4|56892|chromosome 8 open reading frame 4##EU832712|C8orf4|56892|chromosome 8 open reading frame 4##AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2##BC004466|SFRP1|6422|secreted frizzled-related protein 1##AF017987|SFRP1|6422|secreted frizzled-related protein 1##AF001900|SFRP1|6422|secreted frizzled-related protein 1##AF056087|SFRP1|6422|secreted frizzled-related protein 1##AK293090|SFRP1|6422|secreted frizzled-related protein 1##BC036503|SFRP1|6422|secreted frizzled-related protein 1##NM_003012|SFRP1|6422|secreted frizzled-related protein 1##NM_001174124|GOLGA7|51125|golgin A7##NM_016099|GOLGA7|51125|golgin A7##AK026613|GOLGA7|51125|golgin A7	0.995041	0.033158	
chr12	110442602	110442749	reg1007156.p1	6.201	+	AK302535 BC032833 TSC_hg19_v1_chr12_+_110437393 CU691256 AY364251	-5232	+	TSC_hg19_v1_chr12_+_110437339 AF064604	-5342	+	TSC_hg19_v1_chr12_+_110437234 AK025261 BC057817 NM_033121	-5414	+	TSC_hg19_v1_chr12_-_110486328 AK021447 BC041968	43654	-	AK097461 NM_207435	62824	-	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	119546	+	AK302535|ANKRD13A|88455|ankyrin repeat domain 13A##BC032833|ANKRD13A|88455|ankyrin repeat domain 13A##AY364251|ANKRD13A|88455|ankyrin repeat domain 13A##AF064604|ANKRD13A|88455|ankyrin repeat domain 13A##AK025261|ANKRD13A|88455|ankyrin repeat domain 13A##BC057817|ANKRD13A|88455|ankyrin repeat domain 13A##NM_033121|ANKRD13A|88455|ankyrin repeat domain 13A##AK021447|C12orf76|400073|chromosome 12 open reading frame 76##BC041968|C12orf76|400073|chromosome 12 open reading frame 76##AK097461|C12orf76|400073|chromosome 12 open reading frame 76##NM_207435|C12orf76|400073|chromosome 12 open reading frame 76##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)	0.058056	0.0	
chr10	109964352	109964459	reg1005632.p1	6.200	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-1040029	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1505346	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3563360	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1718804	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1718872	-	NM_019903 AB209810 BC057285	1801376	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	0.993092	0.0	
chr12	51157316	51157496	reg1004068.p1	6.200	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-258507	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-258651	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-287819	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	472	+	TSC_hg19_v1_chr12_+_51158275 AK299240	852	+	NM_182559 BC035123 BC048112 CU690554	79317	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	1.326929	0.0	denovo_WM_7:1:0.241
chr15	64162366	64162546	reg1007795.p1	6.200	+	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	-36316	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	-36336	-	TSC_hg19_v1_chr15_-_64126081 U50078	-36372	-	AB018001 AF052941 GU056176 NM_014326 TSC_hg19_v1_chr15_-_64338641 AK310967	176154	-	TSC_hg19_v1_chr15_-_64386038 AK304202 AK026528 BC008865 AK312171 NM_001014812 NM_032231	223641	-	NM_001242933 NM_003099 NM_148955 TSC_hg19_v1_chr15_+_64388198 AB209013 AK128179 AK222561 AK291752	225684	+	AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AB018001|DAPK2|23604|death-associated protein kinase 2##AF052941|DAPK2|23604|death-associated protein kinase 2##GU056176|DAPK2|23604|death-associated protein kinase 2##NM_014326|DAPK2|23604|death-associated protein kinase 2##AK310967|DAPK2|23604|death-associated protein kinase 2##AK304202|FAM96A|84191|family with sequence similarity 96, member A##BC008865|FAM96A|84191|family with sequence similarity 96, member A##AK312171|FAM96A|84191|family with sequence similarity 96, member A##NM_001014812|FAM96A|84191|family with sequence similarity 96, member A##NM_032231|FAM96A|84191|family with sequence similarity 96, member A##NM_001242933|SNX1|6642|sorting nexin 1##NM_003099|SNX1|6642|sorting nexin 1##NM_148955|SNX1|6642|sorting nexin 1##AB209013|SNX1|6642|sorting nexin 1##AK128179|SNX1|6642|sorting nexin 1##AK222561|SNX1|6642|sorting nexin 1##AK291752|SNX1|6642|sorting nexin 1	0.996732	0.0	denovo_WM_7:48:0.470	denovo_WM_7:49:0.527
chr6	27203284	27203415	reg1006951.p1	6.200	+	BC093849 BC093851 TSC_hg19_v1_chr6_+_27114884 AK312232 AB528147 BC134366 BC148293 NM_080596	-88466	+	AB590085 EU446970 TSC_hg19_v1_chr6_-_27114635 AJ223352 BC051872 BC064959 BC108737 BC000893 AK292062 NM_080593	-88742	-	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	-96276	+	AK097918 AK314037 NM_005865 AF052514 AK303106 AB590521	12147	+	NM_033482	76661	-	AF352327 AF336874 BC107050 NM_032030	89209	+	BC093849|HIST1H2AH|85235|histone cluster 1, H2ah##BC093851|HIST1H2AH|85235|histone cluster 1, H2ah##AK312232|HIST1H2AH|85235|histone cluster 1, H2ah##BC134366|HIST1H2AH|85235|histone cluster 1, H2ah##BC148293|HIST1H2AH|85235|histone cluster 1, H2ah##NM_080596|HIST1H2AH|85235|histone cluster 1, H2ah##EU446970|HIST1H2BK|85236|histone cluster 1, H2bk##AJ223352|HIST1H2BK|85236|histone cluster 1, H2bk##BC051872|HIST1H2BK|85236|histone cluster 1, H2bk##BC064959|HIST1H2BK|85236|histone cluster 1, H2bk##BC108737|HIST1H2BK|85236|histone cluster 1, H2bk##BC000893|HIST1H2BK|85236|histone cluster 1, H2bk##AK292062|HIST1H2BK|85236|histone cluster 1, H2bk##NM_080593|HIST1H2BK|85236|histone cluster 1, H2bk##BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i##AK097918|PRSS16|10279|protease, serine, 16 (thymus)##AK314037|PRSS16|10279|protease, serine, 16 (thymus)##NM_005865|PRSS16|10279|protease, serine, 16 (thymus)##AF052514|PRSS16|10279|protease, serine, 16 (thymus)##AK303106|PRSS16|10279|protease, serine, 16 (thymus)##NM_033482|POM121L2|94026|POM121 membrane glycoprotein-like 2##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83	1.972843	0.0	denovo_WM_7:43:0.558	denovo_WM_7:44:0.300	denovo_WM_7:58:0.271	denovo_WM_7:59:0.529
chr8	101562720	101562884	reg1007841.p2	6.200	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-240517	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-240621	-	AB271913 AB271914 AB029316 NM_015435	-247331	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	9138	-	AK093906 AX748361 NM_152628	99090	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	171004	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	0.998065	0.0	denovo_WM_7:-39:0.827
chr8	1684706	1684841	reg1007658.p1	6.200	+	AF119818 AF119817 NM_004745	-235224	+	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	-1003542	-	TSC_hg19_v1_chr8_-_681204 AK297476	-1003562	-	NM_018941 TSC_hg19_v1_chr8_+_1711937 AK312486 AF123757 AF123758 AF123759 AF123760 AF123761	27137	+	TSC_hg19_v1_chr8_+_1712012 BC007725	27263	+	TSC_hg19_v1_chr8_+_1772112 AB002292 NM_014629 BC112926 CR749570	87366	+	AF119818|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AF119817|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_004745|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##NM_018941|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AK312486|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123757|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123758|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123759|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123760|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123761|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##BC007725|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AB002292|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##NM_014629|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##BC112926|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10##CR749570|ARHGEF10|9639|Rho guanine nucleotide exchange factor (GEF) 10	0.0	0.0	
chr9	100361063	100361197	reg1005781.p2	6.200	+	TSC_hg19_v1_chr9_+_100263947 BC002660 NM_003275	-97192	+	NM_001166116 AK314533	-97668	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	-186751	+	TSC_hg19_v1_chr9_-_100395642 AK094043 AK291199 AX748426 BC035604 BX648493 BX538308 AK128615	34499	-	NM_002486 AK312807 TSC_hg19_v1_chr9_+_100395897 D32002	34696	+	NM_139246	34831	-	BC002660|TMOD1|7111|tropomodulin 1##NM_003275|TMOD1|7111|tropomodulin 1##NM_001166116|TMOD1|7111|tropomodulin 1##AK314533|TMOD1|7111|tropomodulin 1##AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7##AK094043|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK291199|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BC035604|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX648493|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX538308|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK128615|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##NM_002486|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##AK312807|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##D32002|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##NM_139246|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	0.0	0.982839	CTCF.p2:25:0.983
chr1	108383438	108383594	reg1006826.p1	6.199	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	-152392	-	AB023193 TSC_hg19_v1_chr1_+_107683657	-699912	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-700774	+	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	124084	-	AJ619961 NM_213651 AK292567	351880	-	AF123303 EU832524 EU832606 AJ619987 TSC_hg19_v1_chr1_-_108742797 AK316506	359254	-	AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AF123303|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832524|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832606|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AJ619987|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK316506|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.997833	0.0	denovo_WM_7:34:0.881
chr16	16680174	16680337	reg1006443.p1	6.199	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-353725	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-353767	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-353773	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	884550	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1893136	-	TSC_hg19_v1_chr16_-_18798077 AK127316	2117841	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.0	0.0	
chr19	16477303	16477483	reg1000406.p1	6.199	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-41624	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-41752	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-168643	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	105383	-	TSC_hg19_v1_chr19_-_16582810 AK291359	105459	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	129577	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.0	0.0	
chr1	36757737	36757846	reg1007426.p1	6.198	+	EU446755 TSC_hg19_v1_chr1_+_36748231	-9591	+	TSC_hg19_v1_chr1_+_36690047 BC065519 BC010997 AF117756 BC002501 BC019076 BC112330 BC112350	-67729	+	TSC_hg19_v1_chr1_+_36690029 NM_005119	-67777	+	TSC_hg19_v1_chr1_+_36771968 NM_001162530	14186	+	TSC_hg19_v1_chr1_+_36772696 NM_024676 AK297015 AK056459	14915	+	AK001509 NM_018166	31963	-	EU446755|THRAP3|9967|thyroid hormone receptor associated protein 3##BC065519|THRAP3|9967|thyroid hormone receptor associated protein 3##BC010997|THRAP3|9967|thyroid hormone receptor associated protein 3##AF117756|THRAP3|9967|thyroid hormone receptor associated protein 3##BC002501|THRAP3|9967|thyroid hormone receptor associated protein 3##BC019076|THRAP3|9967|thyroid hormone receptor associated protein 3##BC112330|THRAP3|9967|thyroid hormone receptor associated protein 3##BC112350|THRAP3|9967|thyroid hormone receptor associated protein 3##NM_005119|THRAP3|9967|thyroid hormone receptor associated protein 3##NM_001162530|SH3D21|79729|SH3 domain containing 21##NM_024676|SH3D21|79729|SH3 domain containing 21##AK297015|SH3D21|79729|SH3 domain containing 21##AK056459|SH3D21|79729|SH3 domain containing 21##AK001509|FAM176B|55194|family with sequence similarity 176, member B##NM_018166|FAM176B|55194|family with sequence similarity 176, member B	1.821059	0.0	denovo_WM_7:77:0.600	denovo_WM_7:92:0.696
chr14	69865121	69865247	reg1006874.p2	6.198	+	NM_001252151 NM_001252152 AK293222 AK316381 TSC_hg19_v1_chr14_+_69865137	-66	+	BC071709 TSC_hg19_v1_chr14_-_69865012 BC014301 AK130850 AK312186 D85758 NM_004450 U66871	-181	-	AK299588 TSC_hg19_v1_chr14_+_69726876 AB032956 BC122545 BC098578 AK315848 AK289745 BC036812 AB384119 AB078143 AJ505951	-138247	+	TSC_hg19_v1_chr14_+_69865408 NM_001252148 NM_001252150 NM_018375 AK222547 AK002136 AK311104	211	+	TSC_hg19_v1_chr14_+_69865419 BC047682	252	+	TSC_hg19_v1_chr14_+_69951404 AK126770 NM_001161498 BC146872	86296	+	NM_001252151|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252152|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK293222|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK316381|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##BC071709|ERH|2079|enhancer of rudimentary homolog (Drosophila)##BC014301|ERH|2079|enhancer of rudimentary homolog (Drosophila)##AK130850|ERH|2079|enhancer of rudimentary homolog (Drosophila)##AK312186|ERH|2079|enhancer of rudimentary homolog (Drosophila)##D85758|ERH|2079|enhancer of rudimentary homolog (Drosophila)##NM_004450|ERH|2079|enhancer of rudimentary homolog (Drosophila)##U66871|ERH|2079|enhancer of rudimentary homolog (Drosophila)##AK299588|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AB032956|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##BC122545|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##BC098578|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AK315848|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AK289745|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##BC036812|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AB078143|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AJ505951|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##NM_001252148|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252150|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_018375|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK222547|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK002136|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##BC047682|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK126770|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##NM_001161498|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC146872|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	0.0	0.0	
chr14	78047639	78047795	reg1006205.p2	6.198	+	BX248771 BX248277 BX248770 AK056709 AK291600 AK300214 BC101019 BC101020 BC101021 BC101022 CR749863 AJ583024 AK075445 NM_182509 NM_199296	-82563	-	TSC_hg19_v1_chr14_+_77924438 BC000321 AK313824 AF164791	-123275	+	TSC_hg19_v1_chr14_+_77924412 NM_012111 AK300766 AJ243310	-123327	+	CU675001 DQ893297 DQ896786 TSC_hg19_v1_chr14_-_78082949	35218	-	Y08686 TSC_hg19_v1_chr14_-_78082981 BC005123	35277	-	AB011098 NM_004863 TSC_hg19_v1_chr14_-_78083124	35409	-	BX248771|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248277|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248770|ISM2|145501|isthmin 2 homolog (zebrafish)##AK056709|ISM2|145501|isthmin 2 homolog (zebrafish)##AK291600|ISM2|145501|isthmin 2 homolog (zebrafish)##AK300214|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101019|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101020|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101021|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101022|ISM2|145501|isthmin 2 homolog (zebrafish)##CR749863|ISM2|145501|isthmin 2 homolog (zebrafish)##AJ583024|ISM2|145501|isthmin 2 homolog (zebrafish)##AK075445|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_182509|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_199296|ISM2|145501|isthmin 2 homolog (zebrafish)##BC000321|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK313824|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AF164791|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##NM_012111|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK300766|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AJ243310|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##DQ893297|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##DQ896786|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##Y08686|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##BC005123|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##AB011098|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##NM_004863|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2	0.995229	0.0	
chr2	54195380	54195541	reg1004890.p2	6.198	+	AF072693 BC110915 TSC_hg19_v1_chr2_-_54087105 AK314885 NM_001164165 NM_006794	-108342	-	NM_001127397 NM_001127398 NM_015701 TSC_hg19_v1_chr2_+_54014180 AY358717 AK001913 AY453410 BC013129 BC022228 AK315477 DQ894762	-181253	+	AK056069 NM_001201965 BC009569 AB209795 TSC_hg19_v1_chr2_-_54014091 AK000985 AK303133 AK001283 NM_016115 NM_145863	-181382	-	D38521 TSC_hg19_v1_chr2_-_54197945 AY894756 AY894754 AY894755 NM_014614	2421	-	TSC_hg19_v1_chr2_-_54198154 AB621805	2672	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	147134	+	AF072693|GPR75|10936|G protein-coupled receptor 75##BC110915|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##AK314885|GPR75|10936|G protein-coupled receptor 75##NM_001164165|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##NM_006794|GPR75|10936|G protein-coupled receptor 75##NM_001127397|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_001127398|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_015701|ERLEC1|27248|endoplasmic reticulum lectin 1##AY358717|ERLEC1|27248|endoplasmic reticulum lectin 1##AK001913|ERLEC1|27248|endoplasmic reticulum lectin 1##AY453410|ERLEC1|27248|endoplasmic reticulum lectin 1##BC013129|ERLEC1|27248|endoplasmic reticulum lectin 1##BC022228|ERLEC1|27248|endoplasmic reticulum lectin 1##AK315477|ERLEC1|27248|endoplasmic reticulum lectin 1##DQ894762|ERLEC1|27248|endoplasmic reticulum lectin 1##AK056069|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_001201965|ASB3|51130|ankyrin repeat and SOCS box containing 3##BC009569|ASB3|51130|ankyrin repeat and SOCS box containing 3##AB209795|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK000985|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK303133|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK001283|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_016115|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_145863|ASB3|51130|ankyrin repeat and SOCS box containing 3##D38521|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894756|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894754|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894755|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_014614|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type	0.998456	0.0	denovo_WM_7:-38:0.310	denovo_WM_7:-39:0.310	denovo_WM_7:-40:0.310
chr2	70361894	70362019	reg1007358.p1	6.197	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-46958	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-47039	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-47129	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	56165	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	113763	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	123294	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.997726	0.0	
chr8	33418930	33419088	reg1006892.p1	6.197	+	AK026916 TSC_hg19_v1_chr8_-_33370644 BX648410 BC007387 BC066935 NM_025115 NM_001102401	-48382	-	NM_032509 TSC_hg19_v1_chr8_+_33342703 AK314491 AK225476 AK027469 BC015965 AF251062 BC039740 BC028230 BC050528 CU690708	-76305	+	AK098505 AK297132 TSC_hg19_v1_chr8_-_33330636 AK303231 AJ512465 AJ535838 AJ535839 AK292993 AJ582015 NM_032664	-88363	-	AK022588 NM_024787 TSC_hg19_v1_chr8_-_33424647	5654	-	TSC_hg19_v1_chr8_-_33457295 BC067804	38278	-	AB237597 AB103376 AY902194 BC001613 NM_024025 TSC_hg19_v1_chr8_-_33457473	38450	-	AK026916|TTI2|80185|TELO2 interacting protein 2##BX648410|TTI2|80185|TELO2 interacting protein 2##BC007387|TTI2|80185|TELO2 interacting protein 2##BC066935|TTI2|80185|TELO2 interacting protein 2##NM_025115|TTI2|80185|TELO2 interacting protein 2##NM_001102401|TTI2|80185|TELO2 interacting protein 2##NM_032509|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK314491|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK225476|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK027469|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC015965|MAK16|84549|MAK16 homolog (S. cerevisiae)##AF251062|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC039740|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC028230|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC050528|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK098505|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK297132|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK303231|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ512465|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535838|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535839|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK292993|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ582015|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##NM_032664|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK022588|RNF122|79845|ring finger protein 122##NM_024787|RNF122|79845|ring finger protein 122##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB237597|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB103376|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY902194|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC001613|DUSP26|78986|dual specificity phosphatase 26 (putative)##NM_024025|DUSP26|78986|dual specificity phosphatase 26 (putative)	0.889661	0.0	denovo_WM_7:61:0.323	denovo_WM_7:62:0.326
chr8	39749624	39749774	reg1009089.p1	6.197	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	-53959	-	NM_001190956 NM_014237 AK313961 AY358321 BC070279 BC034624 CU687082 AJ133004 BC121045 BC121046 AK225744	-307582	+	NM_145004 AK300148 AY172952 AY358739 AK313864 BC026169 BC030698 BC034975 AK122608 BC028702 BC030014 BC026085 DQ890910 DQ894061 CU693126	-784529	+	NM_002164 AK313259 BC027882 X17668 AY221100 CU693308 JF772862	21685	+	AK128691 NM_194294	42774	+	BC021672 NM_020130 BC020623 TSC_hg19_v1_chr8_+_40011000 AF268037 AK026240 EU832636 EU832712	261319	+	X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001190956|ADAM18|8749|ADAM metallopeptidase domain 18##NM_014237|ADAM18|8749|ADAM metallopeptidase domain 18##AK313961|ADAM18|8749|ADAM metallopeptidase domain 18##AY358321|ADAM18|8749|ADAM metallopeptidase domain 18##BC070279|ADAM18|8749|ADAM metallopeptidase domain 18##BC034624|ADAM18|8749|ADAM metallopeptidase domain 18##AJ133004|ADAM18|8749|ADAM metallopeptidase domain 18##BC121045|ADAM18|8749|ADAM metallopeptidase domain 18##BC121046|ADAM18|8749|ADAM metallopeptidase domain 18##AK225744|ADAM18|8749|ADAM metallopeptidase domain 18##NM_145004|ADAM32|203102|ADAM metallopeptidase domain 32##AK300148|ADAM32|203102|ADAM metallopeptidase domain 32##AY172952|ADAM32|203102|ADAM metallopeptidase domain 32##AY358739|ADAM32|203102|ADAM metallopeptidase domain 32##AK313864|ADAM32|203102|ADAM metallopeptidase domain 32##BC026169|ADAM32|203102|ADAM metallopeptidase domain 32##BC030698|ADAM32|203102|ADAM metallopeptidase domain 32##BC034975|ADAM32|203102|ADAM metallopeptidase domain 32##AK122608|ADAM32|203102|ADAM metallopeptidase domain 32##BC028702|ADAM32|203102|ADAM metallopeptidase domain 32##BC030014|ADAM32|203102|ADAM metallopeptidase domain 32##BC026085|ADAM32|203102|ADAM metallopeptidase domain 32##DQ890910|ADAM32|203102|ADAM metallopeptidase domain 32##DQ894061|ADAM32|203102|ADAM metallopeptidase domain 32##NM_002164|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK313259|IDO1|3620|indoleamine 2,3-dioxygenase 1##BC027882|IDO1|3620|indoleamine 2,3-dioxygenase 1##X17668|IDO1|3620|indoleamine 2,3-dioxygenase 1##AY221100|IDO1|3620|indoleamine 2,3-dioxygenase 1##JF772862|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2##BC021672|C8orf4|56892|chromosome 8 open reading frame 4##NM_020130|C8orf4|56892|chromosome 8 open reading frame 4##BC020623|C8orf4|56892|chromosome 8 open reading frame 4##AF268037|C8orf4|56892|chromosome 8 open reading frame 4##AK026240|C8orf4|56892|chromosome 8 open reading frame 4##EU832636|C8orf4|56892|chromosome 8 open reading frame 4##EU832712|C8orf4|56892|chromosome 8 open reading frame 4	0.0	0.441666	CTCF.p2:14:0.442
chr1	206603779	206603895	reg1005152.p1	6.196	+	NM_001910 NM_148964 AJ250716 AJ250717 BC042537 TSC_hg19_v1_chr1_+_206317529 J05036 AK292057 CU692090 AK298069	-286306	+	AK122631 NM_001007544	-315191	-	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	-379476	+	NM_001193321 NM_001193322 NM_014002	39748	+	TSC_hg19_v1_chr1_+_206643818 AK093798 AK310737 AY660028	39969	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	40008	+	NM_001910|CTSE|1510|cathepsin E##NM_148964|CTSE|1510|cathepsin E##AJ250716|CTSE|1510|cathepsin E##AJ250717|CTSE|1510|cathepsin E##BC042537|CTSE|1510|cathepsin E##J05036|CTSE|1510|cathepsin E##AK292057|CTSE|1510|cathepsin E##AK298069|CTSE|1510|cathepsin E##AK122631|C1orf186|440712|chromosome 1 open reading frame 186##NM_001007544|C1orf186|440712|chromosome 1 open reading frame 186##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B##NM_001193321|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193322|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_014002|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK093798|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK310737|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AY660028|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	0.0	0.0	
chr12	122220215	122220348	reg1006707.p1	6.196	+	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	-69537	+	BC057760 NM_173855	-112722	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-155638	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	11293	-	TSC_hg19_v1_chr12_-_122240852 AK311480	20576	-	TSC_hg19_v1_chr12_+_122242580 NM_015048 JF813787	22330	+	AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_015048|SETD1B|23067|SET domain containing 1B##JF813787|SETD1B|23067|SET domain containing 1B	0.0	0.0	
chr12	42693878	42694008	reg1004166.p3	6.195	+	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-61772	-	CU691510 EU446625 EU446756 AB527838 TSC_hg19_v1_chr12_-_42632024 BC037777 AK127531 AK291355 AK296191 AK294260 NM_001190977	-61908	-	TSC_hg19_v1_chr12_-_42538503 AK125141 NM_001099650 NM_173601 BC030023	-155364	-	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	25932	-	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	26035	+	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	183473	-	NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##EU446625|YAF2|10138|YY1 associated factor 2##EU446756|YAF2|10138|YY1 associated factor 2##BC037777|YAF2|10138|YY1 associated factor 2##AK127531|YAF2|10138|YY1 associated factor 2##AK291355|YAF2|10138|YY1 associated factor 2##AK296191|YAF2|10138|YY1 associated factor 2##AK294260|YAF2|10138|YY1 associated factor 2##NM_001190977|YAF2|10138|YY1 associated factor 2##AK125141|GXYLT1|283464|glucoside xylosyltransferase 1##NM_001099650|GXYLT1|283464|glucoside xylosyltransferase 1##NM_173601|GXYLT1|283464|glucoside xylosyltransferase 1##BC030023|GXYLT1|283464|glucoside xylosyltransferase 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)	0.0	0.0	
chr22	29305374	29305551	reg1006938.p1	6.195	+	TSC_hg19_v1_chr22_+_29279579 NM_001206998 AB051436 CR456397	-25685	+	TSC_hg19_v1_chr22_+_29196668 AF086143	-108779	+	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	-108895	-	AK096397 NM_032173	7914	+	TSC_hg19_v1_chr22_+_29449893 BC042614	144463	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	152387	-	NM_001206998|ZNRF3|84133|zinc and ring finger 3##AB051436|ZNRF3|84133|zinc and ring finger 3##CR456397|ZNRF3|84133|zinc and ring finger 3##BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1##AK096397|ZNRF3|84133|zinc and ring finger 3##NM_032173|ZNRF3|84133|zinc and ring finger 3##BC042614|ZNRF3|84133|zinc and ring finger 3##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31	0.913471	0.0	denovo_WM_7:-30:0.636	denovo_WM_7:-31:0.221
chr16	17120724	17120894	reg1002692.p2	6.194	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-794279	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-794321	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-794327	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	443996	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1452582	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1677287	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.0	0.0	
chr3	196659808	196659925	reg1000525.p2	6.194	+	TSC_hg19_v1_chr3_+_196594770 BC030705	-65096	+	TSC_hg19_v1_chr3_+_196594754 AK302305 NM_152699 AK313764	-65134	+	TSC_hg19_v1_chr3_+_196466844 AK291339	-193041	+	AK093216 AK297506 TSC_hg19_v1_chr3_-_196669320	9425	-	AB528874 BT006842 CU674628 TSC_hg19_v1_chr3_-_196669398 DQ890703 DQ893887 AY644767 BX647994 D59253 BC001255 X84157 AK296144 AK316601 BX537372 NM_001042540 NM_007362 AK308192	9554	-	TSC_hg19_v1_chr3_+_196669529 BC062368 AK123020	9644	+	BC030705|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK302305|SENP5|205564|SUMO1/sentrin specific peptidase 5##NM_152699|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK313764|SENP5|205564|SUMO1/sentrin specific peptidase 5##AK291339|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2##AK093216|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK297506|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BT006842|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##DQ890703|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##DQ893887|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AY644767|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BX647994|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##D59253|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BC001255|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##X84157|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK296144|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK316601|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BX537372|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##NM_001042540|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##NM_007362|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##AK308192|NCBP2|22916|nuclear cap binding protein subunit 2, 20kDa##BC062368|LOC152217|152217|uncharacterized LOC152217##AK123020|LOC152217|152217|uncharacterized LOC152217	0.991436	0.0	denovo_WM_7:33:0.931
chr6	101041536	101041679	reg1006291.p1	6.194	+	NM_005068 U70212	-130057	-	AK123634 NM_001040179 NM_032503 AF347063	-599497	-	AY004253 NM_021620	-986958	+	BC125211 BC125212 BC130038 TSC_hg19_v1_chr6_-_101329178 BC050681 AK307903 AK315197	287493	-	TSC_hg19_v1_chr6_-_101329201 NM_006828 NM_022091	287609	-	TSC_hg19_v1_chr6_-_101329241 BC026066 AK299117	287636	-	NM_005068|SIM1|6492|single-minded homolog 1 (Drosophila)##U70212|SIM1|6492|single-minded homolog 1 (Drosophila)##AK123634|MCHR2|84539|melanin-concentrating hormone receptor 2##NM_001040179|MCHR2|84539|melanin-concentrating hormone receptor 2##NM_032503|MCHR2|84539|melanin-concentrating hormone receptor 2##AF347063|MCHR2|84539|melanin-concentrating hormone receptor 2##AY004253|PRDM13|59336|PR domain containing 13##NM_021620|PRDM13|59336|PR domain containing 13##BC125211|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC125212|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC130038|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC050681|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##AK307903|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##AK315197|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##NM_006828|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##NM_022091|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC026066|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##AK299117|ASCC3|10973|activating signal cointegrator 1 complex subunit 3	0.0	0.0	
chr8	12615580	12615737	reg1005533.p1	6.194	+	TSC_hg19_v1_chr8_-_12612974 NM_152271	-2654	-	BC085016 TSC_hg19_v1_chr8_-_12293910 AK291001 AK298940	-321754	-	AK309984 NM_001137610 AK098138 AK308513 TSC_hg19_v1_chr8_-_12293868 AK297741 AK308439	-321815	-	AK296010 NM_020844	187508	+	AB040889 NM_001099677	254114	+	AK299049 NM_001164271	358094	-	NM_152271|LONRF1|91694|LON peptidase N-terminal domain and ring finger 1##BC085016|FAM86B1|85002|family with sequence similarity 86, member B1##AK291001|FAM86B2|653333|family with sequence similarity 86, member B2##AK298940|FAM86B2|653333|family with sequence similarity 86, member B2##AK309984|FAM86B2|653333|family with sequence similarity 86, member B2##NM_001137610|FAM86B2|653333|family with sequence similarity 86, member B2##AK098138|FAM86B1|85002|family with sequence similarity 86, member B1##AK308513|FAM86B1|85002|family with sequence similarity 86, member B1##AK297741|FAM86B2|653333|family with sequence similarity 86, member B2##AK308439|FAM86B1|85002|family with sequence similarity 86, member B1##AK296010|KIAA1456|57604|KIAA1456##NM_020844|KIAA1456|57604|KIAA1456##AB040889|KIAA1456|57604|KIAA1456##NM_001099677|KIAA1456|57604|KIAA1456##AK299049|DLC1|10395|deleted in liver cancer 1##NM_001164271|DLC1|10395|deleted in liver cancer 1	1.974662	0.0	denovo_WM_7:68:0.953	denovo_WM_7:83:0.962
chr1	212360094	212360274	reg1005782.p1	6.193	+	TSC_hg19_v1_chr1_+_212209137 AF195765 AK299649 BC033297 AK027651 CU689622 CU689648 DQ641253	-151004	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	-151066	+	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	-151170	+	TSC_hg19_v1_chr1_+_212458776 AK312530	98594	+	TSC_hg19_v1_chr1_+_212458867 L42373 NM_006243	98688	+	BC110883 TSC_hg19_v1_chr1_+_212459259	99030	+	AF195765|DTL|51514|denticleless homolog (Drosophila)##AK299649|DTL|51514|denticleless homolog (Drosophila)##BC033297|DTL|51514|denticleless homolog (Drosophila)##AK027651|DTL|51514|denticleless homolog (Drosophila)##DQ641253|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##AK312530|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##L42373|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##NM_006243|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC110883|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha	0.993663	0.0	denovo_WM_7:28:0.880
chr1	43693098	43693203	reg1005486.p1	6.193	+	TSC_hg19_v1_chr1_-_43637988 AK299476 AK295006 NM_006824 AB590504 NM_001159936	-55046	-	NM_001167965 NM_001195831 NM_152498 AK056562 TSC_hg19_v1_chr1_+_43638044 BC117280 BC117306 BC143804	-55104	+	TSC_hg19_v1_chr1_-_43637958 AK223455	-55188	-	NM_144626 BC072393	42529	+	TSC_hg19_v1_chr1_-_43736601 BC073924	43453	-	BC041633 NM_182517 NM_001164829	58112	-	AK299476|EBNA1BP2|10969|EBNA1 binding protein 2##AK295006|EBNA1BP2|10969|EBNA1 binding protein 2##NM_006824|EBNA1BP2|10969|EBNA1 binding protein 2##NM_001159936|EBNA1BP2|10969|EBNA1 binding protein 2##NM_001167965|WDR65|149465|WD repeat domain 65##NM_001195831|WDR65|149465|WD repeat domain 65##NM_152498|WDR65|149465|WD repeat domain 65##AK056562|WDR65|149465|WD repeat domain 65##BC117280|WDR65|149465|WD repeat domain 65##BC117306|WDR65|149465|WD repeat domain 65##BC143804|WDR65|149465|WD repeat domain 65##AK223455|EBNA1BP2|10969|EBNA1 binding protein 2##NM_144626|TMEM125|128218|transmembrane protein 125##BC072393|TMEM125|128218|transmembrane protein 125##BC073924|EBNA1BP2|10969|EBNA1 binding protein 2##BC041633|C1orf210|149466|chromosome 1 open reading frame 210##NM_182517|C1orf210|149466|chromosome 1 open reading frame 210##NM_001164829|C1orf210|149466|chromosome 1 open reading frame 210	0.0	0.999754	CTCF.p2:-36:1.000
chr7	156340246	156340365	reg1002091.p1	6.193	+	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	-735415	-	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	-738507	-	TSC_hg19_v1_chr7_+_155437354 AK307515	-902937	+	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	92926	-	NM_030936 TSC_hg19_v1_chr7_+_156433487 AK314067 NM_001184996 AL136874 BC028120 AK307316	93160	+	NM_001184997 AF325690	95390	+	L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AY927450|SHH|6469|sonic hedgehog##AK307515|RBM33|155435|RNA binding motif protein 33##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13##NM_030936|RNF32|140545|ring finger protein 32##AK314067|RNF32|140545|ring finger protein 32##NM_001184996|RNF32|140545|ring finger protein 32##AL136874|RNF32|140545|ring finger protein 32##BC028120|RNF32|140545|ring finger protein 32##AK307316|RNF32|140545|ring finger protein 32##NM_001184997|RNF32|140545|ring finger protein 32##AF325690|RNF32|140545|ring finger protein 32	1.135578	0.0	
chr11	36500390	36500503	reg1007185.p2	6.192	+	NM_001160169	-77900	+	NM_001160168 NM_024841 BX640959 AK024275	-102886	+	NM_001160167 AK055042	-182666	+	TSC_hg19_v1_chr11_-_36531820 U78798 BC031052 AK292978 NM_004620 NM_145803	31368	-	NM_000448 M29474	89122	+	TSC_hg19_v1_chr11_+_36616072 AK290833 DQ121386 AK095997 AK299642 BC009561 BC051031 NM_138787 AK302634	115658	+	NM_001160169|PRR5L|79899|proline rich 5 like##NM_001160168|PRR5L|79899|proline rich 5 like##NM_024841|PRR5L|79899|proline rich 5 like##BX640959|PRR5L|79899|proline rich 5 like##AK024275|PRR5L|79899|proline rich 5 like##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like##U78798|TRAF6|7189|TNF receptor-associated factor 6##BC031052|TRAF6|7189|TNF receptor-associated factor 6##AK292978|TRAF6|7189|TNF receptor-associated factor 6##NM_004620|TRAF6|7189|TNF receptor-associated factor 6##NM_145803|TRAF6|7189|TNF receptor-associated factor 6##NM_000448|RAG1|5896|recombination activating gene 1##M29474|RAG1|5896|recombination activating gene 1##AK290833|C11orf74|119710|chromosome 11 open reading frame 74##DQ121386|C11orf74|119710|chromosome 11 open reading frame 74##AK095997|C11orf74|119710|chromosome 11 open reading frame 74##AK299642|C11orf74|119710|chromosome 11 open reading frame 74##BC009561|C11orf74|119710|chromosome 11 open reading frame 74##BC051031|C11orf74|119710|chromosome 11 open reading frame 74##NM_138787|C11orf74|119710|chromosome 11 open reading frame 74##AK302634|C11orf74|119710|chromosome 11 open reading frame 74	0.031438	0.440548	CTCF.p2:9:0.441
chr1	13985652	13985807	reg1005344.p1	6.192	+	NM_001006624 NM_001006625	-73763	+	NM_006474 NM_198389 BC014668 BC022812 TSC_hg19_v1_chr1_+_13910326 AY194238 AK075327 AK075345 AK312607 AF390106 AF030428 AJ225022 AB127958	-75340	+	BC016048 NM_001010847	-145530	-	TSC_hg19_v1_chr1_+_14026688 BC014468 NM_001135610	40995	+	NM_012231 NM_015866 U17838	45620	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	90156	+	NM_001006624|PDPN|10630|podoplanin##NM_001006625|PDPN|10630|podoplanin##NM_006474|PDPN|10630|podoplanin##NM_198389|PDPN|10630|podoplanin##BC014668|PDPN|10630|podoplanin##BC022812|PDPN|10630|podoplanin##AY194238|PDPN|10630|podoplanin##AK075327|PDPN|10630|podoplanin##AK075345|PDPN|10630|podoplanin##AK312607|PDPN|10630|podoplanin##AF390106|PDPN|10630|podoplanin##AF030428|PDPN|10630|podoplanin##AJ225022|PDPN|10630|podoplanin##AB127958|PDPN|10630|podoplanin##BC016048|LRRC38|126755|leucine rich repeat containing 38##NM_001010847|LRRC38|126755|leucine rich repeat containing 38##BC014468|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001135610|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain##U17838|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain	2.98267	0.0	denovo_WM_7:-16:0.765	denovo_WM_7:-45:0.211	denovo_WM_7:-46:0.566	denovo_WM_7:-47:0.213	denovo_WM_7:-61:0.628	denovo_WM_7:-62:0.249
chr6	24522635	24522774	reg1007773.p1	6.192	+	TSC_hg19_v1_chr6_+_24495196 AK314357 BC034321 NM_001080 NM_170740 DQ891671 DQ894857 AJ427355 Y11192	-27509	+	TSC_hg19_v1_chr6_+_24495080 AK290800 AK294699 AK315380	-27626	+	L11702 CU676688 AY007546 BC093645 BC112001 L11701 AK310692 BC020748 NM_177483 AJ308108 NM_001503	-32911	-	AK310289 NM_001252328	60750	-	AK296310 AK295008 AK307503 AK296426 BC140821 BC144628 NM_001168375 NM_001168376 TSC_hg19_v1_chr6_-_24646374 AB002317 BC152460 NM_001168374 NM_001168377 NM_014809	123464	-	AJ420495 TSC_hg19_v1_chr6_-_24667106 AK296623 AB587417 AK002168 EU446614 BC110375 AF223469 AJ269473 AF201687 BC017553 NM_016614 AK308836	144266	-	AK314357|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##BC034321|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##NM_001080|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##NM_170740|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##DQ891671|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##DQ894857|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##AJ427355|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##Y11192|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##AK290800|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##AK294699|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##AK315380|ALDH5A1|7915|aldehyde dehydrogenase 5 family, member A1##L11702|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##AY007546|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##BC093645|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##BC112001|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##L11701|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##AK310692|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##BC020748|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##NM_177483|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##AJ308108|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##NM_001503|GPLD1|2822|glycosylphosphatidylinositol specific phospholipase D1##AK310289|KIAA0319|9856|KIAA0319##NM_001252328|KIAA0319|9856|KIAA0319##AK296310|KIAA0319|9856|KIAA0319##AK295008|KIAA0319|9856|KIAA0319##AK307503|KIAA0319|9856|KIAA0319##AK296426|KIAA0319|9856|KIAA0319##BC140821|KIAA0319|9856|KIAA0319##BC144628|KIAA0319|9856|KIAA0319##NM_001168375|KIAA0319|9856|KIAA0319##NM_001168376|KIAA0319|9856|KIAA0319##AB002317|KIAA0319|9856|KIAA0319##BC152460|KIAA0319|9856|KIAA0319##NM_001168374|KIAA0319|9856|KIAA0319##NM_001168377|KIAA0319|9856|KIAA0319##NM_014809|KIAA0319|9856|KIAA0319##AJ420495|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AK296623|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AK002168|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##EU446614|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##BC110375|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AF223469|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AJ269473|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AF201687|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##BC017553|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##NM_016614|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AK308836|TDP2|51567|tyrosyl-DNA phosphodiesterase 2	0.957791	0.0	denovo_WM_7:-6:0.816
chr8	8245796	8245955	reg1006030.p1	6.192	+	AK122582 NM_001080826	-6653	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-69987	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-159733	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	313823	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	505063	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	614490	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.998822	0.0	
chr2	16438652	16438777	reg1006736.p2	6.190	+	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-356547	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-356719	+	BC002892 TSC_hg19_v1_chr2_-_16081802 S49953	-356941	-	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	408430	-	DQ860102 NM_001099218	1260991	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	1283173	+	BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002892|MYCNOS|10408|MYCN opposite strand/antisense RNA (non-protein coding)##S49953|MYCNOS|10408|MYCN opposite strand/antisense RNA (non-protein coding)##BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1	0.997871	0.0	
chr14	103322384	103322504	reg1007638.p1	6.188	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-78544	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-78625	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-263283	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	66554	+	TSC_hg19_v1_chr14_-_103430941 BX248752	108514	-	AB384568 TSC_hg19_v1_chr14_-_103523568	201097	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	1.017839	0.0	
chr1	226738252	226738361	reg1005993.p2	6.187	+	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	-1689	+	AL137507 NM_001003665 TSC_hg19_v1_chr1_+_226736500	-1805	+	TSC_hg19_v1_chr1_-_226595798 NM_001618	-142503	-	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	188632	-	TSC_hg19_v1_chr1_+_227058316 NM_000447 NM_012486 AK292299 AK301143	319974	+	NM_020247 TSC_hg19_v1_chr1_+_227127955	389640	+	AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##AL137507|C1orf95|375057|chromosome 1 open reading frame 95##NM_001003665|C1orf95|375057|chromosome 1 open reading frame 95##NM_001618|PARP1|142|poly (ADP-ribose) polymerase 1##BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_000447|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_012486|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK292299|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK301143|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_020247|ADCK3|56997|aarF domain containing kinase 3	0.994824	0.169185	denovo_WM_7:-1:0.736
chr3	178979319	178979485	reg1007702.p1	6.187	+	BC082272 NM_171829	-1724	-	NM_171830	-9758	-	AF160968 NM_014407 BC113851	-9993	-	AK304837 NM_001163677 NM_171828	5411	-	TSC_hg19_v1_chr3_+_179040818 BC026181	61464	+	AB097862 AF003924 NM_016331	62148	+	BC082272|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171829|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171830|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##AF160968|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_014407|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC113851|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##AK304837|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_001163677|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171828|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC026181|ZNF639|51193|zinc finger protein 639##AB097862|ZNF639|51193|zinc finger protein 639##AF003924|ZNF639|51193|zinc finger protein 639##NM_016331|ZNF639|51193|zinc finger protein 639	0.0	0.0	
chr4	13789488	13789644	reg1007676.p1	6.187	+	TSC_hg19_v1_chr4_-_13629350 BC065546 BC043603 AF528529 NM_148894 BC087835	-160249	-	TSC_hg19_v1_chr4_-_13549425 BC035174 AK058104 BC048110 BC053955	-240152	-	AB463932 AF009801 EU446467 BC111966 NM_001189	-243491	-	BC039114 BC044764 BC047127 TSC_hg19_v1_chr4_-_15003743	1214143	-	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	1214429	-	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	1214731	+	BC065546|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC043603|BOD1L|259282|biorientation of chromosomes in cell division 1-like##AF528529|BOD1L|259282|biorientation of chromosomes in cell division 1-like##NM_148894|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC087835|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC035174|LOC285548|285548|uncharacterized LOC285548##AK058104|LOC285548|285548|uncharacterized LOC285548##BC048110|LOC285548|285548|uncharacterized LOC285548##BC053955|LOC285548|285548|uncharacterized LOC285548##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2##BC039114|LOC441009|441009|uncharacterized LOC441009##BC044764|LOC441009|441009|uncharacterized LOC441009##BC047127|LOC441009|441009|uncharacterized LOC441009##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2	0.98591	0.0	denovo_WM_7:-12:0.249	denovo_WM_7:-14:0.388	denovo_WM_7:-17:0.291
chr3	72973315	72973437	reg1008031.p1	6.186	+	TSC_hg19_v1_chr3_+_72937356 NM_001080393	-36100	+	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	-75784	-	BC017274 TSC_hg19_v1_chr3_-_72897575	-75801	-	TSC_hg19_v1_chr3_+_73045961 AK289901 BC100281	72581	+	TSC_hg19_v1_chr3_+_73045984 BC110889	72615	+	TSC_hg19_v1_chr3_+_73046081 AF327345 NM_174907 BC128136 BC128137	72744	+	NM_001080393|GXYLT2|727936|glucoside xylosyltransferase 2##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK289901|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC100281|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##AF327345|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##NM_174907|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128136|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128137|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2	0.999511	0.0	denovo_WM_7:-22:0.295	denovo_WM_7:-23:0.295	denovo_WM_7:-24:0.295
chr10	5476567	5476709	reg1005511.p1	6.185	+	TSC_hg19_v1_chr10_+_5454547 NM_001047160 AK299335 BC053553 S82401 AB587387 CU690984	-22053	+	TSC_hg19_v1_chr10_-_5446792 BC098247 BC099716 BC105634 AK296616 AK025318 NM_001171864 NM_024803	-29850	-	NM_053049 BC100867 BC100868 BC100869 BC100870	-69624	+	TSC_hg19_v1_chr10_+_5488571 NM_005863 AK294244 AK304028 AK315566 AK024919 AJ010046 BC010285 CU679671	11985	+	AB590761 AF172852 BC039172 AK222744 NM_017422	64828	-	AK313934 M58026 NM_005185 BC031889 AB590316	90347	+	NM_001047160|NET1|10276|neuroepithelial cell transforming 1##AK299335|NET1|10276|neuroepithelial cell transforming 1##BC053553|NET1|10276|neuroepithelial cell transforming 1##S82401|NET1|10276|neuroepithelial cell transforming 1##BC098247|TUBAL3|79861|tubulin, alpha-like 3##BC099716|TUBAL3|79861|tubulin, alpha-like 3##BC105634|TUBAL3|79861|tubulin, alpha-like 3##AK296616|TUBAL3|79861|tubulin, alpha-like 3##AK025318|TUBAL3|79861|tubulin, alpha-like 3##NM_001171864|TUBAL3|79861|tubulin, alpha-like 3##NM_024803|TUBAL3|79861|tubulin, alpha-like 3##NM_053049|UCN3|114131|urocortin 3 (stresscopin)##BC100867|UCN3|114131|urocortin 3 (stresscopin)##BC100868|UCN3|114131|urocortin 3 (stresscopin)##BC100869|UCN3|114131|urocortin 3 (stresscopin)##BC100870|UCN3|114131|urocortin 3 (stresscopin)##NM_005863|NET1|10276|neuroepithelial cell transforming 1##AK294244|NET1|10276|neuroepithelial cell transforming 1##AK304028|NET1|10276|neuroepithelial cell transforming 1##AK315566|NET1|10276|neuroepithelial cell transforming 1##AK024919|NET1|10276|neuroepithelial cell transforming 1##AJ010046|NET1|10276|neuroepithelial cell transforming 1##BC010285|NET1|10276|neuroepithelial cell transforming 1##AF172852|CALML5|51806|calmodulin-like 5##BC039172|CALML5|51806|calmodulin-like 5##AK222744|CALML5|51806|calmodulin-like 5##NM_017422|CALML5|51806|calmodulin-like 5##AK313934|CALML3|810|calmodulin-like 3##M58026|CALML3|810|calmodulin-like 3##NM_005185|CALML3|810|calmodulin-like 3##BC031889|CALML3|810|calmodulin-like 3	1.99256	0.0	denovo_WM_7:28:0.780	denovo_WM_7:62:0.278	denovo_WM_7:63:0.512
chr1	169884872	169884993	reg1002742.p1	6.185	+	TSC_hg19_v1_chr1_-_169863059 NM_020423 NM_181093	-21870	-	AL117233 TSC_hg19_v1_chr1_-_169863038 BC014662 AK292507	-21919	-	AL354614 NM_018186	-120383	+	AK122897 NM_001204517	153123	-	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	158811	-	BC157860 BC171858 NM_001136107	230255	+	NM_020423|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##NM_181093|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL117233|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##BC014662|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AK292507|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL354614|C1orf112|55732|chromosome 1 open reading frame 112##NM_018186|C1orf112|55732|chromosome 1 open reading frame 112##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B	0.0	0.0	
chr12	68840870	68841050	reg1005258.p2	6.185	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-114854	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-193656	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-221408	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	163686	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	163735	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	163748	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	1.919815	0.0	denovo_WM_7:-6:0.385	denovo_WM_7:-7:0.571	denovo_WM_7:-21:0.337	denovo_WM_7:-22:0.627
chr14	39584572	39584709	reg1006354.p1	6.185	+	AF027150 NM_001009182 NM_001009183 NM_003616 BC028095 BC104968 AK313947 AB037701 AB037702 AB037703	-1173	+	TSC_hg19_v1_chr14_-_39572440 AK299862 BC036649 NM_006364 AK303485	-12207	-	AK293944 TSC_hg19_v1_chr14_-_39572386 AK312259 X97064	-12296	-	AK310730 TSC_hg19_v1_chr14_-_39639538 AK294339 AL833179 BC047328 BX161510 AK315900 BX248013 AK056690 NM_001079537 NM_177452 BC030604	54932	-	TSC_hg19_v1_chr14_+_39644403 NM_002687 AK292579 AK223612 U77718 BC062602 Y09703 Y10351	59789	+	AK304622 TSC_hg19_v1_chr14_+_39649841	65136	+	AF027150|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009182|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_001009183|GEMIN2|8487|gem (nuclear organelle) associated protein 2##NM_003616|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC028095|GEMIN2|8487|gem (nuclear organelle) associated protein 2##BC104968|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK313947|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037701|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037702|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AB037703|GEMIN2|8487|gem (nuclear organelle) associated protein 2##AK299862|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##BC036649|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##NM_006364|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK303485|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK293944|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK312259|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##X97064|SEC23A|10484|Sec23 homolog A (S. cerevisiae)##AK310730|TRAPPC6B|122553|trafficking protein particle complex 6B##AK294339|TRAPPC6B|122553|trafficking protein particle complex 6B##AL833179|TRAPPC6B|122553|trafficking protein particle complex 6B##BC047328|TRAPPC6B|122553|trafficking protein particle complex 6B##BX161510|TRAPPC6B|122553|trafficking protein particle complex 6B##AK315900|TRAPPC6B|122553|trafficking protein particle complex 6B##BX248013|TRAPPC6B|122553|trafficking protein particle complex 6B##AK056690|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_001079537|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_177452|TRAPPC6B|122553|trafficking protein particle complex 6B##BC030604|TRAPPC6B|122553|trafficking protein particle complex 6B##NM_002687|PNN|5411|pinin, desmosome associated protein##AK292579|PNN|5411|pinin, desmosome associated protein##AK223612|PNN|5411|pinin, desmosome associated protein##U77718|PNN|5411|pinin, desmosome associated protein##BC062602|PNN|5411|pinin, desmosome associated protein##Y09703|PNN|5411|pinin, desmosome associated protein##AK304622|PNN|5411|pinin, desmosome associated protein	0.999297	0.0	
chr19	47158230	47158350	reg1007186.p2	6.185	+	AF493875 NM_033258 BC095514	-20351	-	BC017857 L29016 D29634 BC110342 BC075814 D25418 TSC_hg19_v1_chr19_-_47128333 AK315278 NM_000960	-29967	-	AK310762 AK295927 TSC_hg19_v1_chr19_+_47105407	-52923	+	TSC_hg19_v1_chr19_-_47164311 BC034052 NM_145056	6080	-	BC015472 TSC_hg19_v1_chr19_-_47197232	38909	-	NM_001079882	59286	-	AF493875|GNG8|94235|guanine nucleotide binding protein (G protein), gamma 8##NM_033258|GNG8|94235|guanine nucleotide binding protein (G protein), gamma 8##BC095514|GNG8|94235|guanine nucleotide binding protein (G protein), gamma 8##L29016|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##D29634|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##BC110342|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##BC075814|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##D25418|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##AK315278|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##NM_000960|PTGIR|5739|prostaglandin I2 (prostacyclin) receptor (IP)##AK310762|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)##AK295927|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)##BC034052|DACT3|147906|dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis)##NM_145056|DACT3|147906|dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis)##BC015472|PRKD2|25865|protein kinase D2##NM_001079882|PRKD2|25865|protein kinase D2	0.0	0.0	
chr10	3916093	3916232	reg1006532.p2	6.184	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-88653	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-88851	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-701157	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	952256	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1089352	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1089461	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.0	0.0	
chr11	96072483	96072621	reg1007860.p1	6.184	+	BC052990 BC012086 TSC_hg19_v1_chr11_-_95657272 BC034474 BX647997 NM_001243571 NM_016156 NM_201278 NM_201281 AB028996	-415196	-	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	-415501	-	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	-548712	+	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	3851	-	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	50490	-	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	50622	+	BC052990|MTMR2|8898|myotubularin related protein 2##BC012086|MTMR2|8898|myotubularin related protein 2##BC034474|MTMR2|8898|myotubularin related protein 2##BX647997|MTMR2|8898|myotubularin related protein 2##NM_001243571|MTMR2|8898|myotubularin related protein 2##NM_016156|MTMR2|8898|myotubularin related protein 2##NM_201278|MTMR2|8898|myotubularin related protein 2##NM_201281|MTMR2|8898|myotubularin related protein 2##AB028996|MTMR2|8898|myotubularin related protein 2##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)	0.0	0.0	
chr11	118224064	118224220	reg1004663.p1	6.183	+	AK299997 NM_000073 AK313966 AK315895 AK310622 BC069685 X04145 X60492 AK223314 AK310578 BC113830	-9058	+	JN392069 BC039035 AK311971 TSC_hg19_v1_chr11_-_118213368 BC070321 NM_000732 NM_001040651	-10753	-	NM_000733 AK301255 AK311641 AK292612 BC033578 BC049847 X03884 CU690624	-48662	+	TSC_hg19_v1_chr11_+_118230314 NM_001204077 NM_004788 BC112367	6163	+	BC062695 TSC_hg19_v1_chr11_+_118230319	6177	+	TSC_hg19_v1_chr11_+_118230324 BC111417 BC052643 BC010938	6190	+	NM_000073|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK313966|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK315895|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK310622|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##BC069685|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##X04145|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK223314|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK310578|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##BC113830|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##BC039035|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##AK311971|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##BC070321|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##NM_000732|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##NM_001040651|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##NM_000733|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##AK301255|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##AK311641|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##AK292612|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##BC049847|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##X03884|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##NM_001204077|UBE4A|9354|ubiquitination factor E4A##NM_004788|UBE4A|9354|ubiquitination factor E4A##BC112367|UBE4A|9354|ubiquitination factor E4A##BC062695|UBE4A|9354|ubiquitination factor E4A##BC111417|UBE4A|9354|ubiquitination factor E4A##BC052643|UBE4A|9354|ubiquitination factor E4A##BC010938|UBE4A|9354|ubiquitination factor E4A	0.786755	0.077547	denovo_WM_7:100:0.439
chr17	3614355	3614535	reg1000994.p1	6.183	+	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-14853	-	BC006220 BC028084 TSC_hg19_v1_chr17_-_3599406 BC039015	-15041	-	DQ234349 CU691640 AB528606 TSC_hg19_v1_chr17_-_3599311 AF070573 AF016709 U49395 U49396	-15133	-	TSC_hg19_v1_chr17_-_3627077 AF289864	12657	-	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	12771	+	HQ258689 TSC_hg19_v1_chr17_-_3704463	90008	-	AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC006220|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC028084|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC039015|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##DQ234349|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF070573|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF016709|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49395|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49396|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)	0.0	0.0	
chr22	47164410	47164567	reg1004595.p1	6.183	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-5888	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-30333	-	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	-30409	-	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	863015	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	1720792	+	AK125256 NM_015381 AK123443 AY358847	1807673	+	NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##AK093107|LOC284930|284930|uncharacterized LOC284930##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5	1.017129	0.0	
chr1	113167253	113167326	reg1005167.p1	6.182	+	TSC_hg19_v1_chr1_+_113162456 BT019364 CR407657 CR541819 DQ890754 DQ893919 U56637	-4824	+	BC000144 TSC_hg19_v1_chr1_+_113162453 AK223226	-4838	+	TSC_hg19_v1_chr1_+_113162439 AK289654	-4856	+	TSC_hg19_v1_chr1_+_113217108 AL833353 NM_001130079 NM_020963 AK310512 AK226011	49826	+	TSC_hg19_v1_chr1_+_113217295 AK023297 AB046851 BX647787 BC009312 BC025339 AK074174	50043	+	BC002548 TSC_hg19_v1_chr1_+_113217490	50189	+	BT019364|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR407657|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR541819|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ890754|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ893919|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##U56637|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##BC000144|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK223226|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK289654|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AL833353|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_001130079|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_020963|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK310512|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK226011|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK023297|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AB046851|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BX647787|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC009312|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC025339|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK074174|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC002548|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)	1.120297	0.0	
chr11	120930418	120930565	reg1006783.p1	6.180	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	-35681	+	AB384776 NM_014619 S67803	-399464	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-548026	+	NM_005422	42883	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	232914	+	TSC_hg19_v1_chr11_+_121163484 AK096847 AK223141 AK222686	232991	+	AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##NM_005422|TECTA|7007|tectorin alpha##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK096847|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK223141|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK222686|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like	0.0	0.0	
chr11	46544019	46544156	reg1007402.p1	6.180	+	BC119775 BC119817 AF385590 AF498918 NM_000741 BC095546 BC137535	-135956	-	NM_001012333 TSC_hg19_v1_chr11_+_46403310	-140781	+	TSC_hg19_v1_chr11_+_46403285 X55110	-140800	+	BC045609 NM_017749 AK302808	68855	-	AL834190 TSC_hg19_v1_chr11_-_46615568 AK057896 AK000301 AB051523	71448	-	AK304530 TSC_hg19_v1_chr11_-_46615589	71516	-	BC119775|CHRM4|1132|cholinergic receptor, muscarinic 4##BC119817|CHRM4|1132|cholinergic receptor, muscarinic 4##AF385590|CHRM4|1132|cholinergic receptor, muscarinic 4##AF498918|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_000741|CHRM4|1132|cholinergic receptor, muscarinic 4##BC095546|CHRM4|1132|cholinergic receptor, muscarinic 4##BC137535|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_001012333|MDK|4192|midkine (neurite growth-promoting factor 2)##X55110|MDK|4192|midkine (neurite growth-promoting factor 2)##BC045609|AMBRA1|55626|autophagy/beclin-1 regulator 1##NM_017749|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK302808|AMBRA1|55626|autophagy/beclin-1 regulator 1##AL834190|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK057896|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK000301|AMBRA1|55626|autophagy/beclin-1 regulator 1##AB051523|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK304530|AMBRA1|55626|autophagy/beclin-1 regulator 1	0.0	0.0	
chr2	102720456	102720634	reg1006639.p1	6.180	+	BC027733 BC012346 NM_173343	-105088	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-112182	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-212013	+	TSC_hg19_v1_chr2_+_102759205 X16896	38687	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	49875	+	AF284434 NM_003854 U49065 BC107064	82903	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.984686	0.0	
chr14	52347461	52347609	reg1000536.p1	6.179	+	TSC_hg19_v1_chr14_+_52327416 BC020774	-20099	+	TSC_hg19_v1_chr14_+_52327387 AL832878	-20143	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	-20171	+	AF087877 AF100755 AF151857 DQ525179 NM_016039 TSC_hg19_v1_chr14_+_52456231 AK312004 BC001722	108719	+	TSC_hg19_v1_chr14_+_52456323 EU446806 AB463506 AY817175	108804	+	AJ223500 D86425 AB385187 CU690132 TSC_hg19_v1_chr14_-_52535721	188187	-	BC020774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AL832878|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AF087877|C14orf166|51637|chromosome 14 open reading frame 166##AF100755|C14orf166|51637|chromosome 14 open reading frame 166##AF151857|C14orf166|51637|chromosome 14 open reading frame 166##DQ525179|C14orf166|51637|chromosome 14 open reading frame 166##NM_016039|C14orf166|51637|chromosome 14 open reading frame 166##AK312004|C14orf166|51637|chromosome 14 open reading frame 166##BC001722|C14orf166|51637|chromosome 14 open reading frame 166##EU446806|C14orf166|51637|chromosome 14 open reading frame 166##AY817175|C14orf166|51637|chromosome 14 open reading frame 166##AJ223500|NID2|22795|nidogen 2 (osteonidogen)##D86425|NID2|22795|nidogen 2 (osteonidogen)	0.0	0.0	
chr17	18432380	18432540	reg1007943.p1	6.179	+	AK296659 NM_001040078 AK315818 BC073889 BC105943 TSC_hg19_v1_chr17_+_18380141 CU687266	-52328	+	BC036791 NM_001145127 AK298286 BC026998	-151373	+	TSC_hg19_v1_chr17_-_18266810 BC007979 BC022874 BC038598 AK223552 AK298415 AK302834 AF017065 NM_004169 NM_148918	-165676	-	BC101585 BC104815 BC143561 TSC_hg19_v1_chr17_-_18528914 BC062767 BX647826 AK093811 AX748319	96447	-	NM_001039397	115279	-	NM_001145045	153111	-	AK296659|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##NM_001040078|LGALS9C|654346|lectin, galactoside-binding, soluble, 9C##AK315818|LGALS9C|654346|lectin, galactoside-binding, soluble, 9C##BC073889|LGALS9C|654346|lectin, galactoside-binding, soluble, 9C##BC105943|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##BC036791|EVPLL|645027|envoplakin-like##NM_001145127|EVPLL|645027|envoplakin-like##AK298286|EVPLL|645027|envoplakin-like##BC026998|EVPLL|645027|envoplakin-like##BC007979|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##BC022874|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##BC038598|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AK223552|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AK298415|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AK302834|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AF017065|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##NM_004169|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##NM_148918|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##BC101585|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC104815|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC143561|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC062767|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BX647826|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##AK093811|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##NM_001039397|TBC1D28|254272|TBC1 domain family, member 28##NM_001145045|ZNF286B|729288|zinc finger protein 286B	0.990759	0.0	denovo_WM_7:-83:0.837
chr12	44383142	44383267	reg1005155.p1	6.178	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-153298	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-183092	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-230425	+	D89629 AK315960 AK299277 NM_001145109	886187	-	BC020544 TSC_hg19_v1_chr12_-_45269991	886773	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	886901	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	0.0	0.0	
chr16	11862862	11863042	reg1007736.p1	6.178	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-26296	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-100654	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-182163	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	28099	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	28163	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	82452	-	AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1	0.446534	0.0	denovo_WM_7:8:0.287
chr22	42267866	42267973	reg1007654.p2	6.178	+	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-38648	+	TSC_hg19_v1_chr22_+_42229253 BC056158 U02031 BC051385 CT841522 AK299914	-38718	+	TSC_hg19_v1_chr22_+_42229114 BC051799	-38807	+	NM_001207020	42751	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	54880	-	EU035297 NM_001110215	68303	-	CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC056158|SREBF2|6721|sterol regulatory element binding transcription factor 2##U02031|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051385|SREBF2|6721|sterol regulatory element binding transcription factor 2##CT841522|SREBF2|6721|sterol regulatory element binding transcription factor 2##AK299914|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051799|SREBF2|6721|sterol regulatory element binding transcription factor 2##NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M	0.998499	0.0	denovo_WM_7:-8:0.457	denovo_WM_7:-9:0.457
chr8	9610466	9610560	reg1007407.p1	6.178	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	-197032	+	TSC_hg19_v1_chr8_+_9413423 AK302031	-197090	+	TSC_hg19_v1_chr8_+_9413421 BC098394	-197108	+	TSC_hg19_v1_chr8_+_9911765 AY958429	301256	+	TSC_hg19_v1_chr8_+_9911861 AJ242973 BC054033 NM_001135670 NM_012331 AF086925 AF183420	301366	+	AK293488 AY958430 AY958431 BC047552 NM_001135671 NM_001199729	342550	+	BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AY958429|MSRA|4482|methionine sulfoxide reductase A##AJ242973|MSRA|4482|methionine sulfoxide reductase A##BC054033|MSRA|4482|methionine sulfoxide reductase A##NM_001135670|MSRA|4482|methionine sulfoxide reductase A##NM_012331|MSRA|4482|methionine sulfoxide reductase A##AF086925|MSRA|4482|methionine sulfoxide reductase A##AF183420|MSRA|4482|methionine sulfoxide reductase A##AK293488|MSRA|4482|methionine sulfoxide reductase A##AY958430|MSRA|4482|methionine sulfoxide reductase A##AY958431|MSRA|4482|methionine sulfoxide reductase A##BC047552|MSRA|4482|methionine sulfoxide reductase A##NM_001135671|MSRA|4482|methionine sulfoxide reductase A##NM_001199729|MSRA|4482|methionine sulfoxide reductase A	0.99379	0.0	denovo_WM_7:-28:0.433	denovo_WM_7:-29:0.433
chr3	196001615	196001753	reg1007292.p2	6.176	+	AK172837 NM_152672 TSC_hg19_v1_chr3_+_195943404 AK300996	-58290	+	BC034801 BC022078 NM_001039617 AK122907	-63403	-	TSC_hg19_v1_chr3_-_195808999 NM_001128148	-192668	-	L28957 TSC_hg19_v1_chr3_-_196014549 AK309300 AK313450	12851	-	BC046355 NM_005017 TSC_hg19_v1_chr3_-_196014591 AK304534 AK309073	12934	-	TSC_hg19_v1_chr3_-_196045112 BC015348 BC021177 NM_152773	43429	-	AK172837|OSTalpha|200931|organic solute transporter alpha##NM_152672|OSTalpha|200931|organic solute transporter alpha##AK300996|OSTalpha|200931|organic solute transporter alpha##BC034801|ZDHHC19|131540|zinc finger, DHHC-type containing 19##BC022078|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001039617|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK122907|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001128148|TFRC|7037|transferrin receptor (p90, CD71)##L28957|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309300|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK313450|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##BC046355|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##NM_005017|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK304534|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309073|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##BC015348|TCTEX1D2|255758|Tctex1 domain containing 2##BC021177|TCTEX1D2|255758|Tctex1 domain containing 2##NM_152773|TCTEX1D2|255758|Tctex1 domain containing 2	0.0	0.0	
chr4	12731158	12731263	reg1005405.p2	6.176	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-1300678	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-2044809	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-2272200	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	754741	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	754765	-	AB463932 AF009801 EU446467 BC111966 NM_001189	814865	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	1.984831	0.99173	CTCF.p2:-30:0.992	denovo_WM_7:-54:0.352	denovo_WM_7:-55:0.605	denovo_WM_7:-70:0.427	denovo_WM_7:-71:0.257	denovo_WM_7:-72:0.269
chr8	11276795	11276943	reg1005591.p1	6.176	+	BC038546 TSC_hg19_v1_chr8_-_11205010	-71865	-	AJ291677 NM_054028 BC131696	-88359	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	-134514	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	47360	-	S76617 NM_001715 BC018703 BC004473 BC038555	74724	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	284851	+	BC038546|LOC100129129|100129129|uncharacterized LOC100129129##AJ291677|SLC35G5|83650|solute carrier family 35, member G5##NM_054028|SLC35G5|83650|solute carrier family 35, member G5##BC131696|SLC35G5|83650|solute carrier family 35, member G5##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4	1.989253	0.0	denovo_WM_7:43:0.814	denovo_WM_7:60:0.309	denovo_WM_7:61:0.310	denovo_WM_7:62:0.312
chr9	108713402	108713567	reg1007260.p2	6.176	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-256566	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-256631	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-288727	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	911880	+	TSC_hg19_v1_chr9_+_109686439 CR749850	972985	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	1332048	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.959566	0.0	denovo_WM_7:-10:0.851
chr9	133922339	133922493	reg1007761.p2	6.176	+	AF041835 NM_006059 TSC_hg19_v1_chr9_+_133884573 AK075536	-37866	+	AK300287 NM_001145106 TSC_hg19_v1_chr9_-_133814549	-107925	-	BC032953 NM_032843 TSC_hg19_v1_chr9_-_133814253	-108172	-	NM_001185095 NM_001185096 NM_031426 TSC_hg19_v1_chr9_+_133971890	49462	+	TSC_hg19_v1_chr9_+_133971917 AY359067 AK057789 AK314600 AK022845 AK128526 AK091912 AL136566 AL833896 BC009826 BC021253 AM392853 AM393301 AM393860	49542	+	TSC_hg19_v1_chr9_+_134000975 BC105998 AK307573 NM_005085 AL832609 X64228 BC045620 BC012500	78558	+	AF041835|LAMC3|10319|laminin, gamma 3##NM_006059|LAMC3|10319|laminin, gamma 3##AK075536|LAMC3|10319|laminin, gamma 3##AK300287|FIBCD1|84929|fibrinogen C domain containing 1##NM_001145106|FIBCD1|84929|fibrinogen C domain containing 1##BC032953|FIBCD1|84929|fibrinogen C domain containing 1##NM_032843|FIBCD1|84929|fibrinogen C domain containing 1##NM_001185095|AIF1L|83543|allograft inflammatory factor 1-like##NM_001185096|AIF1L|83543|allograft inflammatory factor 1-like##NM_031426|AIF1L|83543|allograft inflammatory factor 1-like##AY359067|AIF1L|83543|allograft inflammatory factor 1-like##AK057789|AIF1L|83543|allograft inflammatory factor 1-like##AK314600|AIF1L|83543|allograft inflammatory factor 1-like##AK022845|AIF1L|83543|allograft inflammatory factor 1-like##AK128526|AIF1L|83543|allograft inflammatory factor 1-like##AK091912|AIF1L|83543|allograft inflammatory factor 1-like##AL136566|AIF1L|83543|allograft inflammatory factor 1-like##AL833896|AIF1L|83543|allograft inflammatory factor 1-like##BC009826|AIF1L|83543|allograft inflammatory factor 1-like##BC021253|AIF1L|83543|allograft inflammatory factor 1-like##AM392853|AIF1L|83543|allograft inflammatory factor 1-like##AM393301|AIF1L|83543|allograft inflammatory factor 1-like##AM393860|AIF1L|83543|allograft inflammatory factor 1-like##BC105998|NUP214|8021|nucleoporin 214kDa##AK307573|NUP214|8021|nucleoporin 214kDa##NM_005085|NUP214|8021|nucleoporin 214kDa##AL832609|NUP214|8021|nucleoporin 214kDa##X64228|NUP214|8021|nucleoporin 214kDa##BC045620|NUP214|8021|nucleoporin 214kDa##BC012500|NUP214|8021|nucleoporin 214kDa	0.0	0.0	
chr7	5581627	5581800	reg1007247.p2	6.175	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-11504	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-12467	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-12872	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	50725	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	50797	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	239509	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.063023	0.0	
chr9	21802422	21802595	reg1006679.p1	6.175	+	AK124391 TSC_hg19_v1_chr9_-_21559834	-242726	-	AY358570 NM_176891	-320197	-	NM_024013 V00538 V00537 BC112300 BC112302 BC074928 BC074929 AB464595 CU686802 HQ258738 JN848523	-362029	+	TSC_hg19_v1_chr9_+_21802647 AF109294 AY712791 NM_002451 U22233 L40432 AK300592 AK309365	132	+	BC026106 TSC_hg19_v1_chr9_+_21802660 BC012316 BC018625	156	+	TSC_hg19_v1_chr9_+_21802691 CU693136 CR541670 CR541710	209	+	AK124391|MIR31HG|554202|MIR31 host gene (non-protein coding)##AY358570|IFNE|338376|interferon, epsilon##NM_176891|IFNE|338376|interferon, epsilon##NM_024013|IFNA1|3439|interferon, alpha 1##V00538|IFNA1|3439|interferon, alpha 1##V00537|IFNA1|3439|interferon, alpha 1##BC112300|IFNA1|3439|interferon, alpha 1##BC112302|IFNA1|3439|interferon, alpha 1##BC074928|IFNA1|3439|interferon, alpha 1##BC074929|IFNA1|3439|interferon, alpha 1##HQ258738|IFNA1|3439|interferon, alpha 1##AF109294|MTAP|4507|methylthioadenosine phosphorylase##AY712791|MTAP|4507|methylthioadenosine phosphorylase##NM_002451|MTAP|4507|methylthioadenosine phosphorylase##U22233|MTAP|4507|methylthioadenosine phosphorylase##L40432|MTAP|4507|methylthioadenosine phosphorylase##AK300592|MTAP|4507|methylthioadenosine phosphorylase##AK309365|MTAP|4507|methylthioadenosine phosphorylase##BC026106|MTAP|4507|methylthioadenosine phosphorylase##BC012316|MTAP|4507|methylthioadenosine phosphorylase##BC018625|MTAP|4507|methylthioadenosine phosphorylase##CR541670|MTAP|4507|methylthioadenosine phosphorylase##CR541710|MTAP|4507|methylthioadenosine phosphorylase	0.991727	0.0	denovo_WM_7:-31:0.458	denovo_WM_7:-32:0.458
chr20	45753492	45753648	reg1005850.p1	6.174	+	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-230018	+	TSC_hg19_v1_chr20_+_45523505 BC008803	-230062	+	TSC_hg19_v1_chr20_+_45523254 BC013882 NM_005244 NM_172110	-230288	+	TSC_hg19_v1_chr20_-_45927496 BC030721	173999	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	223077	-	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	231918	-	AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC008803|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC013882|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_005244|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_172110|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8	0.995062	0.0	denovo_WM_7:-48:0.899
chr2	12186207	12186385	reg1006019.p1	6.174	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-299521	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-376005	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-503453	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	670957	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	671620	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	672101	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.972044	0.0	denovo_WM_7:0:0.329	denovo_WM_7:0:0.643
chr4	143215901	143216060	reg1006249.p1	6.174	+	AK290619 NM_000585 NM_172175 BC018149 U14407	-658214	+	TSC_hg19_v1_chr4_+_142142087 AK294089 AK223609 AK002106 AJ006591	-1073894	+	TSC_hg19_v1_chr4_+_142142051 NM_014487 AK315463 BC004421	-1073925	+	NM_001101669 NM_003866	551623	-	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	890084	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	890145	+	AK290619|IL15|3600|interleukin 15##NM_000585|IL15|3600|interleukin 15##NM_172175|IL15|3600|interleukin 15##BC018149|IL15|3600|interleukin 15##U14407|IL15|3600|interleukin 15##AK294089|ZNF330|27309|zinc finger protein 330##AK223609|ZNF330|27309|zinc finger protein 330##AK002106|ZNF330|27309|zinc finger protein 330##AJ006591|ZNF330|27309|zinc finger protein 330##NM_014487|ZNF330|27309|zinc finger protein 330##AK315463|ZNF330|27309|zinc finger protein 330##BC004421|ZNF330|27309|zinc finger protein 330##NM_001101669|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##NM_003866|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38	1.295524	0.0	denovo_WM_7:7:0.237	denovo_WM_7:22:0.238
chr21	15825841	15826000	reg1005514.p1	6.173	+	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-70447	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-237423	+	AB463838 AY197607 NM_198996	-246672	-	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	92729	-	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	611297	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	1276405	+	AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25	0.048663	0.0	
chr3	160939664	160939844	reg1006121.p1	6.173	+	AK308865 BC013317 NM_015938 TSC_hg19_v1_chr3_+_160939098 AF132941 AK296710	-633	+	AK225664 TSC_hg19_v1_chr3_+_160939097	-658	+	AB050856 NM_033169 TSC_hg19_v1_chr3_-_160823138 AY359049 BC047618 AK223439 BC028571 AF154848 AK022491 AK095917 NM_001038628 NM_003781 NM_033167 NM_033168	-116817	-	AF458592 BC037817 NM_001040100	150054	-	NM_001080440	274841	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	3856524	-	AK308865|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC013317|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_015938|NMD3|51068|NMD3 homolog (S. cerevisiae)##AF132941|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK296710|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK225664|NMD3|51068|NMD3 homolog (S. cerevisiae)##AB050856|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_033169|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AY359049|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##BC047618|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AK223439|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##BC028571|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AF154848|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AK022491|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AK095917|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_001038628|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_003781|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_033167|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_033168|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001080440|OTOL1|131149|otolin 1##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)	1.997064	0.0	denovo_WM_7:0:0.217	denovo_WM_7:0:0.630	denovo_WM_7:15:0.660
chr5	156558004	156558141	reg1005898.p2	6.173	+	TSC_hg19_v1_chr5_-_156536188 NM_032782	-21856	-	AK027334 TSC_hg19_v1_chr5_-_156536052 AF450242 AF450243 AK314406 BC020843 AF251707 BC063431	-21969	-	AY069944 CU687712 TSC_hg19_v1_chr5_-_156536016	-22061	-	NM_001100816 TSC_hg19_v1_chr5_-_156569881 AK123613 AF031383 BC005250 BC006968 AK308393 NM_004270	11780	-	AY973323 CU692472 AF465821 BC025397 AK057543 BC022035 BC025409 BC025998 NM_130899	35156	-	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	49845	+	NM_032782|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK027334|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450242|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450243|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK314406|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC020843|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF251707|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC063431|HAVCR2|84868|hepatitis A virus cellular receptor 2##AY069944|HAVCR2|84868|hepatitis A virus cellular receptor 2##NM_001100816|MED7|9443|mediator complex subunit 7##AF031383|MED7|9443|mediator complex subunit 7##BC005250|MED7|9443|mediator complex subunit 7##BC006968|MED7|9443|mediator complex subunit 7##AK308393|MED7|9443|mediator complex subunit 7##NM_004270|MED7|9443|mediator complex subunit 7##AY973323|FAM71B|153745|family with sequence similarity 71, member B##AF465821|FAM71B|153745|family with sequence similarity 71, member B##BC025397|FAM71B|153745|family with sequence similarity 71, member B##AK057543|FAM71B|153745|family with sequence similarity 71, member B##BC022035|FAM71B|153745|family with sequence similarity 71, member B##BC025409|FAM71B|153745|family with sequence similarity 71, member B##BC025998|FAM71B|153745|family with sequence similarity 71, member B##NM_130899|FAM71B|153745|family with sequence similarity 71, member B##AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase	0.993098	0.0	
chr1	14927097	14927275	reg1004779.p2	6.172	+	TSC_hg19_v1_chr1_+_14925186 AB028949 AY505119 NM_015209 NM_201628	-1992	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	-851245	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	-851263	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	323533	+	AY505121 NM_001018001	329109	+	AY505122 NM_001017999	345228	+	AB028949|KAZN|23254|kazrin, periplakin interacting protein##AY505119|KAZN|23254|kazrin, periplakin interacting protein##NM_015209|KAZN|23254|kazrin, periplakin interacting protein##NM_201628|KAZN|23254|kazrin, periplakin interacting protein##AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein##AY505122|KAZN|23254|kazrin, periplakin interacting protein##NM_001017999|KAZN|23254|kazrin, periplakin interacting protein	0.995263	0.0	
chr17	73085847	73085969	reg1005974.p1	6.172	+	TSC_hg19_v1_chr17_+_73084056 BC009684 NM_004695	-1853	+	TSC_hg19_v1_chr17_+_73043325 D79998	-42575	+	TSC_hg19_v1_chr17_+_73043288 BC033329 NM_015353	-42679	+	TSC_hg19_v1_chr17_+_73106069 AK300997 AK310697 BC011728 NM_024585	20146	+	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	41949	-	DQ891909 DQ895094 DQ896835 EU176653 CU674698 AF177862 BC001420 TSC_hg19_v1_chr17_-_73150608 AF266846 AK223321 AK312613	64644	-	BC009684|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##NM_004695|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##D79998|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC033329|KCTD2|23510|potassium channel tetramerisation domain containing 2##NM_015353|KCTD2|23510|potassium channel tetramerisation domain containing 2##AK300997|ARMC7|79637|armadillo repeat containing 7##BC011728|ARMC7|79637|armadillo repeat containing 7##NM_024585|ARMC7|79637|armadillo repeat containing 7##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic##DQ891909|HN1|51155|hematological and neurological expressed 1##DQ895094|HN1|51155|hematological and neurological expressed 1##DQ896835|HN1|51155|hematological and neurological expressed 1##EU176653|HN1|51155|hematological and neurological expressed 1##AF177862|HN1|51155|hematological and neurological expressed 1##BC001420|HN1|51155|hematological and neurological expressed 1##AF266846|HN1|51155|hematological and neurological expressed 1##AK223321|HN1|51155|hematological and neurological expressed 1##AK312613|HN1|51155|hematological and neurological expressed 1	0.986595	0.0	
chr19	11679001	11679181	reg1001230.p3	6.172	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-9058	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-29432	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-39134	-	X14618 TSC_hg19_v1_chr19_-_11688461	9360	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	9399	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	9439	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.0	0.0	
chr10	72250668	72250776	reg1007528.p2	6.171	+	TSC_hg19_v1_chr10_+_72238575 NM_014431 AB033100 BC136375 BC136376	-12107	+	TSC_hg19_v1_chr10_-_72201438 BC104976 NM_018055 BC112025	-49271	-	BC033585 TSC_hg19_v1_chr10_-_72201372	-49356	-	BC047695 TSC_hg19_v1_chr10_-_72362497 AK312754	111747	-	BC063043 TSC_hg19_v1_chr10_-_72362518 FJ555237 NM_001083116 NM_005041	111804	-	AB462932 AF358666 AJ345098 NM_080722 NM_139155	181835	+	NM_014431|KIAA1274|27143|KIAA1274##AB033100|KIAA1274|27143|KIAA1274##BC136375|KIAA1274|27143|KIAA1274##BC136376|KIAA1274|27143|KIAA1274##BC104976|NODAL|4838|nodal homolog (mouse)##NM_018055|NODAL|4838|nodal homolog (mouse)##BC112025|NODAL|4838|nodal homolog (mouse)##BC033585|NODAL|4838|nodal homolog (mouse)##BC047695|PRF1|5551|perforin 1 (pore forming protein)##AK312754|PRF1|5551|perforin 1 (pore forming protein)##BC063043|PRF1|5551|perforin 1 (pore forming protein)##FJ555237|PRF1|5551|perforin 1 (pore forming protein)##NM_001083116|PRF1|5551|perforin 1 (pore forming protein)##NM_005041|PRF1|5551|perforin 1 (pore forming protein)##AF358666|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##AJ345098|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_080722|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_139155|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14	0.746359	0.0	denovo_WM_7:-1:0.730
chr16	57079763	57079923	reg1007153.p1	6.170	+	AF389420 EF452236 TSC_hg19_v1_chr16_+_57054697	-25183	+	AK074182 NM_032206	-28858	+	TSC_hg19_v1_chr16_+_57023474 AK097030	-56383	+	TSC_hg19_v1_chr16_+_57126462 NM_152727	46622	+	TSC_hg19_v1_chr16_+_57126513 AF492484 BC053658	46665	+	TSC_hg19_v1_chr16_+_57126530 AK315394	46730	+	AF389420|NLRC5|84166|NLR family, CARD domain containing 5##EF452236|NLRC5|84166|NLR family, CARD domain containing 5##AK074182|NLRC5|84166|NLR family, CARD domain containing 5##NM_032206|NLRC5|84166|NLR family, CARD domain containing 5##AK097030|NLRC5|84166|NLR family, CARD domain containing 5##NM_152727|CPNE2|221184|copine II##AF492484|CPNE2|221184|copine II##BC053658|CPNE2|221184|copine II##AK315394|CPNE2|221184|copine II	0.0	0.958262	CTCF.p2:42:0.958
chr2	190628136	190628316	reg1002554.p2	6.170	+	AK314565 NM_022353 AK055441	-289	-	AK126073 NM_144708	-87516	+	TSC_hg19_v1_chr2_+_190539326 BC037215 AK307328 BC047413	-88866	+	NM_000534 NM_001128143 NM_001128144	20584	+	TSC_hg19_v1_chr2_-_190649062 AF151036 AF395704 AK313533 BC005200	20808	-	TSC_hg19_v1_chr2_-_190649075 AK074756 NM_001128150 NM_016467	20872	-	AK314565|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##NM_022353|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##AK055441|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##AK126073|ANKAR|150709|ankyrin and armadillo repeat containing##NM_144708|ANKAR|150709|ankyrin and armadillo repeat containing##BC037215|ANKAR|150709|ankyrin and armadillo repeat containing##AK307328|ANKAR|150709|ankyrin and armadillo repeat containing##BC047413|ANKAR|150709|ankyrin and armadillo repeat containing##NM_000534|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128143|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128144|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AF151036|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF395704|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK313533|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##BC005200|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK074756|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_001128150|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_016467|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)	1.993601	0.0	denovo_WM_7:89:0.421	denovo_WM_7:90:0.421
chr5	86524822	86524923	reg1006677.p1	6.170	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-611055	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-611114	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2844208	-	TSC_hg19_v1_chr5_+_86563706 CR749722	38813	+	TSC_hg19_v1_chr5_+_86563831 BC131816	38954	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	39194	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	3.074747	0.0	denovo_WM_7:28:0.221	denovo_WM_7:32:0.374	denovo_WM_7:33:0.297
chr12	867465	867565	reg1004481.p2	6.169	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-4759	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	-5359	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-94800	-	BC013629 TSC_hg19_v1_chr12_+_1017145	149567	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	191311	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	232937	+	AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1	1.087671	0.0	
chr19	8569298	8569478	reg1006856.p2	6.169	+	TSC_hg19_v1_chr19_-_8567525 AB590302 DQ891057 EU176810 BC028012 AK308227 AJ272324 NM_032152	-1877	-	AK310661 TSC_hg19_v1_chr19_+_8509876 BC018916 CU674058 AB209733	-59505	+	TSC_hg19_v1_chr19_+_8509869 L03532 BC058893 BC019580 L32611	-59517	+	BC071937 BC007310 TSC_hg19_v1_chr19_-_8579045 AK074191 AK225034 NM_001146175 NM_032370	9653	-	AJ310570 AK092877 AX747785 TSC_hg19_v1_chr19_-_8642295	72876	-	TSC_hg19_v1_chr19_-_8642306 BC028071	72913	-	DQ891057|PRAM1|84106|PML-RARA regulated adaptor molecule 1##EU176810|PRAM1|84106|PML-RARA regulated adaptor molecule 1##BC028012|PRAM1|84106|PML-RARA regulated adaptor molecule 1##AK308227|PRAM1|84106|PML-RARA regulated adaptor molecule 1##AJ272324|PRAM1|84106|PML-RARA regulated adaptor molecule 1##NM_032152|PRAM1|84106|PML-RARA regulated adaptor molecule 1##BC018916|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##AB209733|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##L03532|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##BC058893|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##BC019580|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##L32611|HNRNPM|4670|heterogeneous nuclear ribonucleoprotein M##BC071937|ZNF414|84330|zinc finger protein 414##BC007310|ZNF414|84330|zinc finger protein 414##AK074191|ZNF414|84330|zinc finger protein 414##AK225034|ZNF414|84330|zinc finger protein 414##NM_001146175|ZNF414|84330|zinc finger protein 414##NM_032370|ZNF414|84330|zinc finger protein 414##AJ310570|MYO1F|4542|myosin IF##BC028071|MYO1F|4542|myosin IF	0.998961	0.0	denovo_WM_7:6:0.418	denovo_WM_7:7:0.418
chr2	173306234	173306407	reg1006473.p1	6.169	+	TSC_hg19_v1_chr2_+_173292395 X53586 BC136455 BC136456 X59512 AB208842	-13841	+	TSC_hg19_v1_chr2_+_173292316 NM_000210 NM_001079818 BC007002	-14000	+	AK311695 AK296496 TSC_hg19_v1_chr2_+_173292147	-14193	+	TSC_hg19_v1_chr2_+_173420776 NM_002610	114461	+	TSC_hg19_v1_chr2_+_173420856 AK312700 AK304388 BC039158	114505	+	AB528474 CU691664 TSC_hg19_v1_chr2_+_173420875 DQ891300 DQ893348 DQ894484 DQ896668 DQ234350	114555	+	X53586|ITGA6|3655|integrin, alpha 6##BC136455|ITGA6|3655|integrin, alpha 6##BC136456|ITGA6|3655|integrin, alpha 6##X59512|ITGA6|3655|integrin, alpha 6##AB208842|ITGA6|3655|integrin, alpha 6##NM_000210|ITGA6|3655|integrin, alpha 6##NM_001079818|ITGA6|3655|integrin, alpha 6##BC007002|ITGA6|3655|integrin, alpha 6##AK311695|ITGA6|3655|integrin, alpha 6##AK296496|ITGA6|3655|integrin, alpha 6##NM_002610|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##AK312700|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##AK304388|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##BC039158|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##DQ891300|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##DQ893348|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##DQ894484|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##DQ896668|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1##DQ234350|PDK1|5163|pyruvate dehydrogenase kinase, isozyme 1	1.987228	0.0	denovo_WM_7:-3:0.243	denovo_WM_7:-4:0.209	denovo_WM_7:-23:0.204	denovo_WM_7:-24:0.238
chr3	48849823	48849938	reg1007141.p2	6.169	+	TSC_hg19_v1_chr3_-_48754622 BC019694 AK291501 AY007091 BC001864 BC065533 BC004469 AK304714 AK315204 AK024045 AK290526 AL137514 BX537544 NM_001005909 NM_001005910 NM_001005911 NM_001146178 NM_001146179 NM_001190316 NM_001190317 NM_016291	-95231	-	AB384897 CU677561 BC016052 BC006255 TSC_hg19_v1_chr3_-_48723349 AF303581 BC026280 AF178432 AJ242655 AY453794 NM_016453 NM_184231	-126585	-	TSC_hg19_v1_chr3_-_48700322 AF231023 NM_001407	-149545	-	BT007225 AB464095 CU678176 TSC_hg19_v1_chr3_-_48885175	35229	-	X14968 TSC_hg19_v1_chr3_-_48885238 AK293042	35355	-	TSC_hg19_v1_chr3_-_48885271 BC002763 NM_004157	35408	-	BC019694|IP6K2|51447|inositol hexakisphosphate kinase 2##AK291501|IP6K2|51447|inositol hexakisphosphate kinase 2##AY007091|IP6K2|51447|inositol hexakisphosphate kinase 2##BC001864|IP6K2|51447|inositol hexakisphosphate kinase 2##BC065533|IP6K2|51447|inositol hexakisphosphate kinase 2##BC004469|IP6K2|51447|inositol hexakisphosphate kinase 2##AK304714|IP6K2|51447|inositol hexakisphosphate kinase 2##AK315204|IP6K2|51447|inositol hexakisphosphate kinase 2##AK024045|IP6K2|51447|inositol hexakisphosphate kinase 2##AK290526|IP6K2|51447|inositol hexakisphosphate kinase 2##AL137514|IP6K2|51447|inositol hexakisphosphate kinase 2##BX537544|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001005909|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001005910|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001005911|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001146178|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001146179|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001190316|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_001190317|IP6K2|51447|inositol hexakisphosphate kinase 2##NM_016291|IP6K2|51447|inositol hexakisphosphate kinase 2##BC016052|NCKIPSD|51517|NCK interacting protein with SH3 domain##BC006255|NCKIPSD|51517|NCK interacting protein with SH3 domain##AF303581|NCKIPSD|51517|NCK interacting protein with SH3 domain##BC026280|NCKIPSD|51517|NCK interacting protein with SH3 domain##AF178432|NCKIPSD|51517|NCK interacting protein with SH3 domain##AJ242655|NCKIPSD|51517|NCK interacting protein with SH3 domain##AY453794|NCKIPSD|51517|NCK interacting protein with SH3 domain##NM_016453|NCKIPSD|51517|NCK interacting protein with SH3 domain##NM_184231|NCKIPSD|51517|NCK interacting protein with SH3 domain##AF231023|CELSR3|1951|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)##NM_001407|CELSR3|1951|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)##BT007225|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##X14968|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##AK293042|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##BC002763|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##NM_004157|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha	0.999768	0.0	denovo_WM_7:47:0.443	denovo_WM_7:48:0.443
chr16	22065383	22065506	reg1006225.p2	6.168	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-45956	+	BC039562 BC021724 BC028605 NM_173806	-53016	-	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	-100723	+	AK098260 AK128606 AK307544 NM_173615	38417	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	152229	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	243304	+	NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##BC039562|PDZD9|255762|PDZ domain containing 9##BC021724|PDZD9|255762|PDZ domain containing 9##BC028605|PDZD9|255762|PDZ domain containing 9##NM_173806|PDZD9|255762|PDZ domain containing 9##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)	1.048309	0.0	denovo_WM_7:-23:0.693	denovo_WM_7:-24:0.244
chr18	77283806	77283931	reg1006466.p2	6.168	+	BC045628 TSC_hg19_v1_chr18_+_77253425	-30488	+	TSC_hg19_v1_chr18_+_77160328 NM_172387 NM_172389 U59736 AK293760 U80918 X99829 EU887560 EU887562 EU887564 EU887566	-123551	+	TSC_hg19_v1_chr18_+_77155967 U08015 BC104753 BC112243 BC143457 EU887559 EU887561 EU887563 EU887565	-127773	+	TSC_hg19_v1_chr18_-_77439359 AK002023	155445	-	TSC_hg19_v1_chr18_-_77439740 AK098581	155873	-	TSC_hg19_v1_chr18_+_77439801 BC047999 NM_004715 NM_048368	155933	+	BC045628|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172387|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172389|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U59736|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK293760|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80918|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887560|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887562|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887564|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887566|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U08015|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC104753|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC112243|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC143457|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887559|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887561|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887563|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887565|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK098581|FLJ25715|284241|uncharacterized protein FLJ25715##BC047999|CTDP1|9150|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1##NM_004715|CTDP1|9150|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1##NM_048368|CTDP1|9150|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	0.0	0.0	
chr16	27410094	27410228	reg1003068.p2	6.167	+	TSC_hg19_v1_chr16_+_27341339 BC136365 BC151131	-68817	+	TSC_hg19_v1_chr16_+_27325301 BC110343 AK223591 X52425	-84843	+	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	-84907	+	AK292663 NM_181078 NM_181079 AK312825	3326	+	NM_021798 AY358826 AF254067	28443	+	TSC_hg19_v1_chr16_-_27561218 BX648143	151057	-	BC136365|IL4R|3566|interleukin 4 receptor##BC151131|IL4R|3566|interleukin 4 receptor##BC110343|IL4R|3566|interleukin 4 receptor##AK223591|IL4R|3566|interleukin 4 receptor##X52425|IL4R|3566|interleukin 4 receptor##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor##AK292663|IL21R|50615|interleukin 21 receptor##NM_181078|IL21R|50615|interleukin 21 receptor##NM_181079|IL21R|50615|interleukin 21 receptor##AK312825|IL21R|50615|interleukin 21 receptor##NM_021798|IL21R|50615|interleukin 21 receptor##AY358826|IL21R|50615|interleukin 21 receptor##AF254067|IL21R|50615|interleukin 21 receptor##BX648143|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa	0.950147	0.0	denovo_WM_7:-14:0.245	denovo_WM_7:-18:0.548
chr16	88850669	88850795	reg1005846.p1	6.167	+	TSC_hg19_v1_chr16_+_88772910 BC121805 BC125269 NM_001012759 NM_001012762 BC157881 AK299521 BC108659 BC021056 BC063512 BC080540	-77809	+	TSC_hg19_v1_chr16_-_88772809 NM_178841	-77910	-	CU680704 HQ258016 TSC_hg19_v1_chr16_-_88772797 BC013948 AK290920 BC017226 NM_001171815	-77964	-	NM_001142864 AB384448 TSC_hg19_v1_chr16_-_88851456	686	-	AB053172 NM_030928 TSC_hg19_v1_chr16_+_88870207	19465	+	TSC_hg19_v1_chr16_+_88870215 AF321125 BC000137 BC009410 BC008860 BC008676	19548	+	BC121805|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC125269|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012759|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_001012762|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC157881|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##AK299521|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC108659|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC021056|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC063512|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##BC080540|CTU2|348180|cytosolic thiouridylase subunit 2 homolog (S. pombe)##NM_178841|RNF166|115992|ring finger protein 166##HQ258016|RNF166|115992|ring finger protein 166##BC013948|RNF166|115992|ring finger protein 166##AK290920|RNF166|115992|ring finger protein 166##BC017226|RNF166|115992|ring finger protein 166##NM_001171815|RNF166|115992|ring finger protein 166##NM_001142864|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##AB384448|PIEZO1|9780|piezo-type mechanosensitive ion channel component 1##AB053172|CDT1|81620|chromatin licensing and DNA replication factor 1##NM_030928|CDT1|81620|chromatin licensing and DNA replication factor 1##AF321125|CDT1|81620|chromatin licensing and DNA replication factor 1##BC000137|CDT1|81620|chromatin licensing and DNA replication factor 1##BC009410|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008860|CDT1|81620|chromatin licensing and DNA replication factor 1##BC008676|CDT1|81620|chromatin licensing and DNA replication factor 1	0.0	0.030216	
chr18	36191117	36191297	reg1001898.p2	6.167	+	NM_001025087 NM_001025088 NM_001025089 NM_020180	-1045208	-	AF329265 AK295009 BC045711 TSC_hg19_v1_chr18_-_35145684 AK074596 AF248650 BC001946 BC004167 AB209774	-1045511	-	TSC_hg19_v1_chr18_-_34409124 BC087845 NM_015476	-1782087	-	TSC_hg19_v1_chr18_-_36915657 D28405	724449	-	TSC_hg19_v1_chr18_-_37380279 AK090603	1189061	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	3343992	+	NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##AF329265|CELF4|56853|CUGBP, Elav-like family member 4##AK295009|CELF4|56853|CUGBP, Elav-like family member 4##BC045711|CELF4|56853|CUGBP, Elav-like family member 4##AK074596|CELF4|56853|CUGBP, Elav-like family member 4##AF248650|CELF4|56853|CUGBP, Elav-like family member 4##BC001946|CELF4|56853|CUGBP, Elav-like family member 4##BC004167|CELF4|56853|CUGBP, Elav-like family member 4##AB209774|CELF4|56853|CUGBP, Elav-like family member 4##BC087845|TPGS2|25941|tubulin polyglutamylase complex subunit 2##NM_015476|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK090603|LOC647946|647946|uncharacterized LOC647946##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3	0.0	0.0	
chr7	28612808	28612940	reg1005595.p1	6.167	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-82109	+	L05911 NM_004904	-137641	+	L05515 NM_182898	-160731	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	112809	+	CU690330 TSC_hg19_v1_chr7_-_28997732	384823	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	385055	-	AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats	0.398394	0.122371	denovo_WM_7:11:0.310
chr10	4665414	4665574	reg1006456.p2	6.166	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-837985	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-838183	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-1450489	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	202924	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	340020	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	340129	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.981374	0.0	denovo_WM_7:-14:0.534
chr1	95428027	95428201	reg1001777.p1	6.165	+	TSC_hg19_v1_chr1_-_95392690 S80562 BC025372 AK312370 AK298145 NM_001839	-35474	-	CR541848 CU692978 DQ893013 DQ896258 TSC_hg19_v1_chr1_-_95392498	-35641	-	TSC_hg19_v1_chr1_+_95286194 AK300193	-141915	+	TSC_hg19_v1_chr1_-_95538474 BC011706 AK289395 NM_144988	110372	-	BC108263 NM_001199679	129958	+	TSC_hg19_v1_chr1_+_95582939 NM_152487 AK056404 BC137457 BC137458 BC139737	154846	+	S80562|CNN3|1266|calponin 3, acidic##BC025372|CNN3|1266|calponin 3, acidic##AK312370|CNN3|1266|calponin 3, acidic##AK298145|CNN3|1266|calponin 3, acidic##NM_001839|CNN3|1266|calponin 3, acidic##CR541848|CNN3|1266|calponin 3, acidic##DQ893013|CNN3|1266|calponin 3, acidic##DQ896258|CNN3|1266|calponin 3, acidic##AK300193|SLC44A3|126969|solute carrier family 44, member 3##BC011706|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##AK289395|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##NM_144988|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##BC108263|TMEM56|148534|transmembrane protein 56##NM_001199679|TMEM56|148534|transmembrane protein 56##NM_152487|TMEM56|148534|transmembrane protein 56##AK056404|TMEM56|148534|transmembrane protein 56##BC137457|TMEM56|148534|transmembrane protein 56##BC137458|TMEM56|148534|transmembrane protein 56##BC139737|TMEM56|148534|transmembrane protein 56	1.999001	0.0	denovo_WM_7:1:0.740	denovo_WM_7:2:0.243	denovo_WM_7:-13:0.845
chr15	40842786	40842931	reg1007191.p1	6.164	+	NM_130468 AB066595 BC049214 TSC_hg19_v1_chr15_+_40763222 BC053633 AF282905 AK074739 CU690606 AF401222 AY358446 BC023653	-79516	+	TSC_hg19_v1_chr15_+_40733353 BC022782 NM_014952	-109495	+	TSC_hg19_v1_chr15_+_40698024 AK315296 BT007145 DQ892577 DQ895793	-144810	+	AK092214 AX747411 AL832032 AK098781 TSC_hg19_v1_chr15_-_40857211	14344	-	TSC_hg19_v1_chr15_-_40857235 AK312842 AK293079 NM_001080791 NM_001080792 NM_052849	14382	-	TSC_hg19_v1_chr15_+_40861497 AK301383	18640	+	NM_130468|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AB066595|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC049214|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC053633|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF282905|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AK074739|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF401222|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AY358446|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC023653|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC022782|BAHD1|22893|bromo adjacent homology domain containing 1##NM_014952|BAHD1|22893|bromo adjacent homology domain containing 1##AK315296|IVD|3712|isovaleryl-CoA dehydrogenase##BT007145|IVD|3712|isovaleryl-CoA dehydrogenase##DQ892577|IVD|3712|isovaleryl-CoA dehydrogenase##DQ895793|IVD|3712|isovaleryl-CoA dehydrogenase##AK092214|C15orf57|90416|chromosome 15 open reading frame 57##AL832032|C15orf57|90416|chromosome 15 open reading frame 57##AK098781|C15orf57|90416|chromosome 15 open reading frame 57##AK312842|C15orf57|90416|chromosome 15 open reading frame 57##AK293079|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080791|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080792|C15orf57|90416|chromosome 15 open reading frame 57##NM_052849|C15orf57|90416|chromosome 15 open reading frame 57##AK301383|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2	0.0	0.0	
chr4	112881830	112881979	reg1004978.p2	6.164	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1318626	-	BC106010 TSC_hg19_v1_chr4_-_111558185 AK291591 AF048720 AF048721	-1323735	-	BC007987 AF048722 TSC_hg19_v1_chr4_-_111544234 BC013998 NM_000325	-1337629	-	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	184710	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	271180	+	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	325097	-	NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC106010|PITX2|5308|paired-like homeodomain 2##AK291591|PITX2|5308|paired-like homeodomain 2##AF048720|PITX2|5308|paired-like homeodomain 2##AF048721|PITX2|5308|paired-like homeodomain 2##AF048722|PITX2|5308|paired-like homeodomain 2##BC013998|PITX2|5308|paired-like homeodomain 2##NM_000325|PITX2|5308|paired-like homeodomain 2##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain	1.823508	0.0	denovo_WM_7:-7:0.607	denovo_WM_7:-8:0.261	denovo_WM_7:-37:0.396	denovo_WM_7:-39:0.377
chr1	179006395	179006575	reg1007221.p2	6.163	+	AK289989 BC046441 TSC_hg19_v1_chr1_+_178995259	-11267	+	TSC_hg19_v1_chr1_+_178995055 AB480690 BC051794 NM_014864	-11421	+	TSC_hg19_v1_chr1_+_178995028 AB007944	-11465	+	NM_022371 TSC_hg19_v1_chr1_+_179051147	44649	+	BC088368 BC001085 TSC_hg19_v1_chr1_+_179051232 BC018292 AJ299403 AJ299441 BC007571 AK025998	44740	+	TSC_hg19_v1_chr1_+_179051236 BC011746 AK316530 AK299966 CU675711 CU676228 CR457354	44763	+	AK289989|FAM20B|9917|family with sequence similarity 20, member B##BC046441|FAM20B|9917|family with sequence similarity 20, member B##AB480690|FAM20B|9917|family with sequence similarity 20, member B##BC051794|FAM20B|9917|family with sequence similarity 20, member B##NM_014864|FAM20B|9917|family with sequence similarity 20, member B##AB007944|FAM20B|9917|family with sequence similarity 20, member B##NM_022371|TOR3A|64222|torsin family 3, member A##BC088368|TOR3A|64222|torsin family 3, member A##BC001085|TOR3A|64222|torsin family 3, member A##BC018292|TOR3A|64222|torsin family 3, member A##AJ299403|TOR3A|64222|torsin family 3, member A##AJ299441|TOR3A|64222|torsin family 3, member A##BC007571|TOR3A|64222|torsin family 3, member A##AK025998|TOR3A|64222|torsin family 3, member A##BC011746|TOR3A|64222|torsin family 3, member A##AK316530|TOR3A|64222|torsin family 3, member A##AK299966|TOR3A|64222|torsin family 3, member A##CR457354|TOR3A|64222|torsin family 3, member A	0.015121	0.0	
chr15	66089808	66089966	reg1006559.p2	6.162	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-5294	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-5414	-	AF062922 NM_004727	-175618	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	71960	+	TSC_hg19_v1_chr15_-_66321664 AK054827	231806	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	456190	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	1.990266	0.0	denovo_WM_7:-61:0.269	denovo_WM_7:-62:0.726	denovo_WM_7:-77:0.859
chr17	64701179	64701345	reg1007124.p1	6.162	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-402335	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-402512	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-475737	-	AK290171 TSC_hg19_v1_chr17_+_64831234	129973	+	BC101633 NM_145811 BC101607 AF361351 AF458898	172158	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	259627	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.0	0.0	
chr1	235292279	235292411	reg1006521.p1	6.161	+	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	-114	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	-256	-	TSC_hg19_v1_chr1_-_234895746 AF193050	-396571	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	32218	-	AB210032 NM_001206794	198456	-	BC130418 BC143719 TSC_hg19_v1_chr1_-_235491484 BC062536 BX648820	199122	-	AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AF193050|PP2672|100130249|uncharacterized LOC100130249##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34##AB210032|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001206794|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC130418|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC143719|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC062536|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BX648820|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)	0.0	0.0	
chr20	47542939	47543062	reg1005636.p1	6.161	+	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	-4682	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-98561	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-98714	-	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	119826	+	TSC_hg19_v1_chr20_+_47662875 AF053640	119888	+	TSC_hg19_v1_chr20_-_47804876 AK292859 BC001893 BC010169 AY529074 AK291487 BC007532 AK057739 AK025519 BC095397 AL136601	261786	-	BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK292859|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC001893|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC010169|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY529074|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK291487|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC007532|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK057739|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK025519|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC095397|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AL136601|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)	0.996754	0.0	denovo_WM_7:0:0.893
chr22	30474645	30474825	reg1006267.p1	6.161	+	BC142713 TSC_hg19_v1_chr22_+_30279201 AB002369 BC152455	-195474	+	TSC_hg19_v1_chr22_+_30279167 BC151217 AK289581 NM_021090 NM_153050 NM_153051	-195606	+	BC025368 TSC_hg19_v1_chr22_-_30234264 AK303257 NM_001242906 NM_032204	-240463	-	BC030013 NM_152510	1717	+	AB527710 X13967 BC093733 BC093735 BC143305 BC069540 TSC_hg19_v1_chr22_-_30642749 AK315310 NM_002309	168004	-	CR541703 AB463155 CU013134 CU013422 DQ892537 DQ895748 CR456534 BC011589 NM_020530 TSC_hg19_v1_chr22_-_30662841	188080	-	BC142713|MTMR3|8897|myotubularin related protein 3##AB002369|MTMR3|8897|myotubularin related protein 3##BC152455|MTMR3|8897|myotubularin related protein 3##BC151217|MTMR3|8897|myotubularin related protein 3##AK289581|MTMR3|8897|myotubularin related protein 3##NM_021090|MTMR3|8897|myotubularin related protein 3##NM_153050|MTMR3|8897|myotubularin related protein 3##NM_153051|MTMR3|8897|myotubularin related protein 3##BC025368|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##AK303257|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##NM_001242906|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##NM_032204|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##BC030013|HORMAD2|150280|HORMA domain containing 2##NM_152510|HORMAD2|150280|HORMA domain containing 2##X13967|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC093733|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC093735|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC143305|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC069540|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##AK315310|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##NM_002309|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##CR541703|OSM|5008|oncostatin M##CU013134|OSM|5008|oncostatin M##CU013422|OSM|5008|oncostatin M##DQ892537|OSM|5008|oncostatin M##DQ895748|OSM|5008|oncostatin M##CR456534|OSM|5008|oncostatin M##BC011589|OSM|5008|oncostatin M##NM_020530|OSM|5008|oncostatin M	0.0	0.0	
chr8	103252068	103252201	reg1006109.p1	6.161	+	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-961	-	NM_001040630	-115000	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	-115611	-	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	172777	-	NM_024410 AK315276 BC104456 BC104457	311727	+	BC011538 NM_001032282 S81439	413958	-	AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001040630|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10	0.0	0.0	
chr4	33412990	33413100	reg1006902.p1	6.159	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-2690586	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-2690851	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-2691046	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	2832992	-	AK131492 NM_001136536 AK304357 AK316523	2870201	+	BC157885 NM_001170700	2872598	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.997574	0.0	denovo_WM_7:44:0.206	denovo_WM_7:46:0.206	denovo_WM_7:47:0.532
chr15	63783457	63783582	reg1007029.p1	6.158	+	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	-109444	-	BT006656 DQ893188 DQ896511 EU831616 EU831623 EU831703 EU831708 AF051882 BC000278 AF037335 BC011691 TSC_hg19_v1_chr15_-_63674046 AK096845 BC023981	-109527	-	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	-213706	+	TSC_hg19_v1_chr15_+_63796791 AK314223	13263	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	13358	+	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	106060	+	AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##BT006656|CA12|771|carbonic anhydrase XII##DQ893188|CA12|771|carbonic anhydrase XII##DQ896511|CA12|771|carbonic anhydrase XII##EU831616|CA12|771|carbonic anhydrase XII##EU831623|CA12|771|carbonic anhydrase XII##EU831703|CA12|771|carbonic anhydrase XII##EU831708|CA12|771|carbonic anhydrase XII##AF051882|CA12|771|carbonic anhydrase XII##BC000278|CA12|771|carbonic anhydrase XII##AF037335|CA12|771|carbonic anhydrase XII##BC011691|CA12|771|carbonic anhydrase XII##AK096845|CA12|771|carbonic anhydrase XII##BC023981|CA12|771|carbonic anhydrase XII##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK314223|USP3|9960|ubiquitin specific peptidase 3##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22	0.999377	0.0	denovo_WM_7:1:0.739
chr19	1894924	1895104	reg1006250.p1	6.158	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-9510	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-9543	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-9569	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	10338	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	10391	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	46149	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	1.994155	0.0	denovo_WM_7:0:0.290	denovo_WM_7:1:0.424	denovo_WM_7:-14:0.293	denovo_WM_7:-15:0.427
chr2	43612680	43612860	reg1007159.p1	6.158	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-159028	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-159040	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-159425	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	210378	-	TSC_hg19_v1_chr2_+_43864411 BC063310	251643	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	251669	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	1.088459	0.0	
chr8	59677411	59677555	reg1007067.p2	6.157	+	NM_003580 TSC_hg19_v1_chr8_-_59572413	-105072	-	BC041124 TSC_hg19_v1_chr8_-_59572386	-105097	-	TSC_hg19_v1_chr8_-_59572336 AK292679 AK313991	-105170	-	AB385385 DQ891665 DQ894852 AK000971 BC016665 AK302331 AB018351 NM_014729 TSC_hg19_v1_chr8_-_60031796	354189	-	BC015531 BC108929 BC082971 TSC_hg19_v1_chr8_-_61193958 BC069744 AK090655 AK289470 AK314538 AY075022 NM_004056	1516438	-	TSC_hg19_v1_chr8_+_61429488 NM_001242644 NM_002865	1751957	+	NM_003580|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC041124|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK292679|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK313991|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##DQ891665|TOX|9760|thymocyte selection-associated high mobility group box##DQ894852|TOX|9760|thymocyte selection-associated high mobility group box##AK000971|TOX|9760|thymocyte selection-associated high mobility group box##BC016665|TOX|9760|thymocyte selection-associated high mobility group box##AK302331|TOX|9760|thymocyte selection-associated high mobility group box##AB018351|TOX|9760|thymocyte selection-associated high mobility group box##NM_014729|TOX|9760|thymocyte selection-associated high mobility group box##BC015531|CA8|767|carbonic anhydrase VIII##BC108929|CA8|767|carbonic anhydrase VIII##BC069744|CA8|767|carbonic anhydrase VIII##AK090655|CA8|767|carbonic anhydrase VIII##AK289470|CA8|767|carbonic anhydrase VIII##AK314538|CA8|767|carbonic anhydrase VIII##AY075022|CA8|767|carbonic anhydrase VIII##NM_004056|CA8|767|carbonic anhydrase VIII##NM_001242644|RAB2A|5862|RAB2A, member RAS oncogene family##NM_002865|RAB2A|5862|RAB2A, member RAS oncogene family	0.0	0.0	
chr2	75325852	75326006	reg1000806.p1	6.156	+	TSC_hg19_v1_chr2_+_75185771 NM_019896 BC031331	-140144	+	TSC_hg19_v1_chr2_-_75062285 BC013295	-263678	-	TSC_hg19_v1_chr2_+_75061273 AF148513 BC021116 BC064369 AK290357	-264669	+	AK289765 NM_001058 NM_015727	100699	-	BC016157 TSC_hg19_v1_chr2_-_75788066	462118	-	TSC_hg19_v1_chr2_-_75788091 NM_001135032	462161	-	NM_019896|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC031331|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##AF148513|HK2|3099|hexokinase 2##BC021116|HK2|3099|hexokinase 2##BC064369|HK2|3099|hexokinase 2##AK290357|HK2|3099|hexokinase 2##AK289765|TACR1|6869|tachykinin receptor 1##NM_001058|TACR1|6869|tachykinin receptor 1##NM_015727|TACR1|6869|tachykinin receptor 1##BC016157|FAM176A|84141|family with sequence similarity 176, member A##NM_001135032|FAM176A|84141|family with sequence similarity 176, member A	0.0	0.0	
chr9	11338303	11338404	reg1006982.p1	6.156	+	BC028038 NM_002839	-725631	-	TSC_hg19_v1_chr9_+_8858136 AK094342	-2480220	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-2604434	-	NM_000550 X51420 BC052608	1355072	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	1436663	+	HQ257895 TSC_hg19_v1_chr9_+_12775847	1437428	+	BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150##HQ257895|C9orf150|286343|chromosome 9 open reading frame 150	0.601477	0.0	denovo_WM_7:44:0.566
chr22	32034543	32034723	reg1002755.p1	6.154	+	TSC_hg19_v1_chr22_-_32026821 BC001482 NM_014338	-7801	-	BC033613 TSC_hg19_v1_chr22_+_32010180	-24467	+	TSC_hg19_v1_chr22_+_31892521 BC110814 AK292408 BC041101	-142087	+	TSC_hg19_v1_chr22_-_32058202 AB528208 CU013140 CU013428 CR456540 DQ656048	23575	-	NM_173566 TSC_hg19_v1_chr22_-_32146119	111495	-	NM_001242897 TSC_hg19_v1_chr22_+_32149953	115315	+	BC001482|PISD|23761|phosphatidylserine decarboxylase##NM_014338|PISD|23761|phosphatidylserine decarboxylase##BC033613|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC110814|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##AK292408|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##BC041101|SFI1|9814|Sfi1 homolog, spindle assembly associated (yeast)##CU013140|PISD|23761|phosphatidylserine decarboxylase##CU013428|PISD|23761|phosphatidylserine decarboxylase##CR456540|PISD|23761|phosphatidylserine decarboxylase##NM_173566|PRR14L|253143|proline rich 14-like##NM_001242897|DEPDC5|9681|DEP domain containing 5	0.0	0.0	
chr6	26536906	26537048	reg1006915.p1	6.154	+	U39576 BC096312 BC096313 BC096314 BC096315 NM_001732	-35506	+	NM_001197234 NM_007049 NM_078476 TSC_hg19_v1_chr6_+_26458182 AK297098 NM_001197233 BC016661 AB209777 U90543	-78787	+	NM_001242803 NM_006994 NM_197974 AK291722 AK301553 AB209581 BC015815 AK223279 AK223301 U90548	-96238	+	TSC_hg19_v1_chr6_+_26538630 NM_006353 AK311841 BC001282	1653	+	TSC_hg19_v1_chr6_+_26597203 NM_013375 BC066313 BC048812 AB027258 AB463399 CU688138 CU690582 EU446795	60230	+	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	122975	-	U39576|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096312|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096313|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096314|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096315|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001732|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001197234|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_007049|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_078476|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AK297098|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001197233|BTN2A1|11120|butyrophilin, subfamily 2, member A1##BC016661|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AB209777|BTN2A1|11120|butyrophilin, subfamily 2, member A1##U90543|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001242803|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_006994|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_197974|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK291722|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK301553|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AB209581|BTN3A3|10384|butyrophilin, subfamily 3, member A3##BC015815|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK223279|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK223301|BTN3A3|10384|butyrophilin, subfamily 3, member A3##U90548|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_006353|HMGN4|10473|high mobility group nucleosomal binding domain 4##AK311841|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC001282|HMGN4|10473|high mobility group nucleosomal binding domain 4##NM_013375|ABT1|29777|activator of basal transcription 1##BC066313|ABT1|29777|activator of basal transcription 1##BC048812|ABT1|29777|activator of basal transcription 1##AB027258|ABT1|29777|activator of basal transcription 1##EU446795|ABT1|29777|activator of basal transcription 1##NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322	0.998139	0.0	denovo_WM_7:-1:0.513	denovo_WM_7:1:0.256
chrX	138636008	138636149	reg1006171.p2	6.154	+	BC109214 BC109215 NM_000133 TSC_hg19_v1_chrX_+_138612919 J00137 AB186358 AK292749 FR846238 FR846239 FR846240 J00136 M11309	-23168	+	TSC_hg19_v1_chrX_-_138287186 AK303685 NM_001139498 NM_001139500 NM_001139501 AK297545	-348881	-	AF199613 TSC_hg19_v1_chrX_-_138287166	-348919	-	X12556 AK313900 AK296488 NM_001171877 NM_001171878 NM_001171879 NM_005369	88847	-	AK302957 AK316416 NM_001099855 NM_001171876	154276	-	BC132728 BC132730 AJ580093 AJ580094 NM_001010986 NM_173694	278337	-	BC109214|F9|2158|coagulation factor IX##BC109215|F9|2158|coagulation factor IX##NM_000133|F9|2158|coagulation factor IX##J00137|F9|2158|coagulation factor IX##AB186358|F9|2158|coagulation factor IX##AK292749|F9|2158|coagulation factor IX##FR846238|F9|2158|coagulation factor IX##FR846239|F9|2158|coagulation factor IX##FR846240|F9|2158|coagulation factor IX##J00136|F9|2158|coagulation factor IX##M11309|F9|2158|coagulation factor IX##AK303685|FGF13|2258|fibroblast growth factor 13##NM_001139498|FGF13|2258|fibroblast growth factor 13##NM_001139500|FGF13|2258|fibroblast growth factor 13##NM_001139501|FGF13|2258|fibroblast growth factor 13##AK297545|FGF13|2258|fibroblast growth factor 13##AF199613|FGF13|2258|fibroblast growth factor 13##X12556|MCF2|4168|MCF.2 cell line derived transforming sequence##AK313900|MCF2|4168|MCF.2 cell line derived transforming sequence##AK296488|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001171877|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001171878|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001171879|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_005369|MCF2|4168|MCF.2 cell line derived transforming sequence##AK302957|MCF2|4168|MCF.2 cell line derived transforming sequence##AK316416|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001099855|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001171876|MCF2|4168|MCF.2 cell line derived transforming sequence##BC132728|ATP11C|286410|ATPase, class VI, type 11C##BC132730|ATP11C|286410|ATPase, class VI, type 11C##AJ580093|ATP11C|286410|ATPase, class VI, type 11C##AJ580094|ATP11C|286410|ATPase, class VI, type 11C##NM_001010986|ATP11C|286410|ATPase, class VI, type 11C##NM_173694|ATP11C|286410|ATPase, class VI, type 11C	1.997861	0.0	denovo_WM_7:-64:0.229	denovo_WM_7:-65:0.229	denovo_WM_7:-66:0.229	denovo_WM_7:-67:0.229
chr19	14123555	14123710	reg1006742.p1	6.153	+	BC049826 TSC_hg19_v1_chr19_-_14117133 AK309824 NM_002918	-6503	-	TSC_hg19_v1_chr19_-_14116878 X58964	-6718	-	AK027100 AK298489 NM_001146254 NM_001146255	-59435	-	BC140935 AB076563 AF447451 BC110069 NM_080864	15355	+	NM_004843	18629	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	18882	+	BC049826|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK309824|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##NM_002918|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##X58964|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK027100|PODNL1|79883|podocan-like 1##AK298489|PODNL1|79883|podocan-like 1##NM_001146254|PODNL1|79883|podocan-like 1##NM_001146255|PODNL1|79883|podocan-like 1##BC140935|RLN3|117579|relaxin 3##AB076563|RLN3|117579|relaxin 3##AF447451|RLN3|117579|relaxin 3##BC110069|RLN3|117579|relaxin 3##NM_080864|RLN3|117579|relaxin 3##NM_004843|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha	0.358156	0.0	
chr21	26859621	26859776	reg1008095.p1	6.153	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1058630	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4488925	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4489008	+	TSC_hg19_v1_chr21_+_26934442 AF402776	74774	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	120117	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	151955	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.062573	0.0	
chr6	135504066	135504236	reg1006041.p1	6.153	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-1565	+	TSC_hg19_v1_chr6_+_135502507 BC064955	-1656	+	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	-1703	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	12755	+	TSC_hg19_v1_chr6_+_135517056 X17469	12938	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	314674	-	AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1	0.987224	0.0	
chr6	9710826	9710957	reg1007541.p2	6.153	+	TSC_hg19_v1_chr6_+_8435870 BC040612	-1275003	+	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	-1275183	-	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-1608101	-	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	701725	-	FJ794945 M61156 M36711 X52611 TSC_hg19_v1_chr6_-_10415305	704384	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	704577	-	BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##FJ794945|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M61156|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M36711|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##X52611|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.997447	0.0	
chr15	55401542	55401696	reg1001331.p2	6.152	+	NM_001080534	-1096519	+	AK096055 BX537884 NM_182758	-1349772	-	AB463985 BC140830 NM_004498 U96173 TSC_hg19_v1_chr15_-_53082301	-2319425	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	87473	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	87560	-	AF125393 NM_183234 U57094 U38654 NM_004580	160918	-	NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AK096055|WDR72|256764|WD repeat domain 72##BX537884|WDR72|256764|WD repeat domain 72##NM_182758|WDR72|256764|WD repeat domain 72##BC140830|ONECUT1|3175|one cut homeobox 1##NM_004498|ONECUT1|3175|one cut homeobox 1##U96173|ONECUT1|3175|one cut homeobox 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family	0.79663	0.0	denovo_WM_7:41:0.457	denovo_WM_7:47:0.227
chr17	69738148	69738286	reg1006933.p2	6.152	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1572521	+	BC033038 NM_170742	-1637223	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1666787	+	TSC_hg19_v1_chr17_-_70116937 AL833139	378721	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	378942	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	378953	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.0	0.0	
chr3	130465793	130465973	reg1003553.p1	6.152	+	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	-280	-	AM774225 NM_001102608	-186706	+	EU085556 NM_153264 AM906078	-401465	+	NM_001199180 NM_001199181 NM_001199182 AK296470	103523	+	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	147262	+	AK301388 BC069265 AK027806 NM_014065 AK294156	279757	-	BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##EU085556|COL6A5|256076|collagen, type VI, alpha 5##NM_153264|COL6A5|256076|collagen, type VI, alpha 5##AM906078|COL6A5|256076|collagen, type VI, alpha 5##NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK301388|ASTE1|28990|asteroid homolog 1 (Drosophila)##BC069265|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK027806|ASTE1|28990|asteroid homolog 1 (Drosophila)##NM_014065|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK294156|ASTE1|28990|asteroid homolog 1 (Drosophila)	0.0	0.0	
chr9	140632655	140632824	reg1004156.p1	6.152	+	TSC_hg19_v1_chr9_+_140513456 BC025772 AK022941	-119272	+	BC047504 NM_001145527 NM_024757 TSC_hg19_v1_chr9_+_140513443	-119296	+	TSC_hg19_v1_chr9_-_140513273 BC011781 AF267857 NM_032937	-119446	-	AB028932 AB058779 TSC_hg19_v1_chr9_+_140638543	5790	+	TSC_hg19_v1_chr9_+_140772233 M94172 M94173 NM_000718 NM_001243812	139495	+	TSC_hg19_v1_chr9_+_140918045 AB209467	285335	+	BC025772|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##AK022941|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##BC047504|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##NM_001145527|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##NM_024757|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##BC011781|C9orf37|85026|chromosome 9 open reading frame 37##AF267857|C9orf37|85026|chromosome 9 open reading frame 37##NM_032937|C9orf37|85026|chromosome 9 open reading frame 37##AB028932|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##AB058779|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##M94172|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##M94173|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##NM_000718|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##NM_001243812|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##AB209467|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit	0.962693	0.0	denovo_WM_7:-70:0.630
chr10	105127460	105127640	reg1006169.p2	6.151	+	TSC_hg19_v1_chr10_-_105110898 AK309105	-16648	-	BC010235 NM_001011663 NM_032154 TSC_hg19_v1_chr10_-_105110895	-16657	-	AK290679 TSC_hg19_v1_chr10_-_105110844	-16690	-	AK291229 TSC_hg19_v1_chr10_+_105127732 NM_006951 X95525 BC136340 BC136348 BC052268 U80191 AK223615 U75309 AB464281	177	+	TSC_hg19_v1_chr10_-_105156222 AL110185 AK311888 BC091507 BC072683 BC007087 AJ272056 NM_001206426 NM_001206427 NM_032747	28677	-	AK293772 AK294971 TSC_hg19_v1_chr10_+_105156399 AK307418 BC049838 NM_014976	28847	+	AK309105|PCGF6|84108|polycomb group ring finger 6##BC010235|PCGF6|84108|polycomb group ring finger 6##NM_001011663|PCGF6|84108|polycomb group ring finger 6##NM_032154|PCGF6|84108|polycomb group ring finger 6##AK290679|PCGF6|84108|polycomb group ring finger 6##AK291229|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##NM_006951|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##X95525|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##BC136340|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##BC136348|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##BC052268|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##U80191|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##AK223615|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##U75309|TAF5|6877|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa##AL110185|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##AK311888|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##BC091507|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##BC072683|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##BC007087|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##AJ272056|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##NM_001206426|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##NM_001206427|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##NM_032747|USMG5|84833|up-regulated during skeletal muscle growth 5 homolog (mouse)##AK294971|PDCD11|22984|programmed cell death 11##AK307418|PDCD11|22984|programmed cell death 11##BC049838|PDCD11|22984|programmed cell death 11##NM_014976|PDCD11|22984|programmed cell death 11	0.0	0.0	
chr22	36839592	36839728	reg1004145.p1	6.151	+	TSC_hg19_v1_chr22_-_36784062 NM_002473	-55602	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-55652	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	-55681	-	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	38019	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	63398	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	63457	-	NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle##BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2	0.999705	0.0	
chr16	12064325	12064465	reg1007798.p2	6.150	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-5311	+	NM_001130007	-53877	-	TSC_hg19_v1_chr16_-_12009919 AK315267	-54467	-	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	6178	+	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	833256	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	833324	-	NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AK315267|GSPT1|2935|G1 to S phase transition 1##AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1	0.986189	0.0	denovo_WM_7:3:0.831
chr17	8151554	8151734	reg1001401.p3	6.150	+	TSC_hg19_v1_chr17_-_8151373 NM_025099	-252	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	-282	-	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	-37761	-	TSC_hg19_v1_chr17_+_8152624 AK292804 NM_012393 AK295895 AK292402 AB002359 BC146768 BC167158	973	+	AF168714 TSC_hg19_v1_chr17_+_8191987 NM_001177801 NM_001177802 NM_016492 AK290399 BC100017 AF151070 AF265205 AF265206 CR749387 AF161514 BC012552 BC006486 CR457206	40316	+	AY498866 BC101330 BC101329 AK097536 NM_201520	46502	-	NM_025099|CTC1|80169|CTS telomere maintenance complex component 1##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##AK292804|PFAS|5198|phosphoribosylformylglycinamidine synthase##NM_012393|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK295895|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK292402|PFAS|5198|phosphoribosylformylglycinamidine synthase##AB002359|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC146768|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC167158|PFAS|5198|phosphoribosylformylglycinamidine synthase##AF168714|RANGRF|29098|RAN guanine nucleotide release factor##NM_001177801|RANGRF|29098|RAN guanine nucleotide release factor##NM_001177802|RANGRF|29098|RAN guanine nucleotide release factor##NM_016492|RANGRF|29098|RAN guanine nucleotide release factor##AK290399|RANGRF|29098|RAN guanine nucleotide release factor##BC100017|RANGRF|29098|RAN guanine nucleotide release factor##AF151070|RANGRF|29098|RAN guanine nucleotide release factor##AF265205|RANGRF|29098|RAN guanine nucleotide release factor##AF265206|RANGRF|29098|RAN guanine nucleotide release factor##CR749387|RANGRF|29098|RAN guanine nucleotide release factor##AF161514|RANGRF|29098|RAN guanine nucleotide release factor##BC012552|RANGRF|29098|RAN guanine nucleotide release factor##BC006486|RANGRF|29098|RAN guanine nucleotide release factor##CR457206|RANGRF|29098|RAN guanine nucleotide release factor##AY498866|SLC25A35|399512|solute carrier family 25, member 35##BC101330|SLC25A35|399512|solute carrier family 25, member 35##BC101329|SLC25A35|399512|solute carrier family 25, member 35##AK097536|SLC25A35|399512|solute carrier family 25, member 35##NM_201520|SLC25A35|399512|solute carrier family 25, member 35	1.977884	0.0	denovo_WM_7:-73:0.888
chr2	157192062	157192201	reg1005673.p1	6.150	+	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	-2968	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	-5441	-	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1636942	+	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	99827	+	TSC_hg19_v1_chr2_+_157291981 AK290057	99874	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	100103	+	S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK290057|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.998992	0.0	denovo_WM_7:-14:0.518	denovo_WM_7:-15:0.462
chr6	135484665	135484845	reg1002620.p3	6.150	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-108761	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-108867	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-213523	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	17693	+	TSC_hg19_v1_chr6_+_135502507 BC064955	17740	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	17831	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr1	118878207	118878352	reg1007100.p1	6.149	+	AB527095 AK091816 AX747199 AY555274 BX648110 NM_206996	-150466	-	TSC_hg19_v1_chr1_+_118472364 NM_006784 AK292438 AF083217 BC128385 BC128454 BC148244	-405901	+	BC058836 TSC_hg19_v1_chr1_+_118472357	-405926	+	AK127536 NM_152380	653899	-	TSC_hg19_v1_chr1_+_119683039 BC063600 BC043601	804747	+	TSC_hg19_v1_chr1_-_119683274 BC021722 CU692202 BC039889 AK223197 AJ242739 AK296799 BC044575 AK313740 AK300295 NM_015836 NM_201263	804990	-	AK091816|SPAG17|200162|sperm associated antigen 17##AY555274|SPAG17|200162|sperm associated antigen 17##BX648110|SPAG17|200162|sperm associated antigen 17##NM_206996|SPAG17|200162|sperm associated antigen 17##NM_006784|WDR3|10885|WD repeat domain 3##AK292438|WDR3|10885|WD repeat domain 3##AF083217|WDR3|10885|WD repeat domain 3##BC058836|WDR3|10885|WD repeat domain 3##AK127536|TBX15|6913|T-box 15##NM_152380|TBX15|6913|T-box 15##BC021722|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC039889|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK223197|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AJ242739|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK296799|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC044575|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK313740|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK300295|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_015836|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_201263|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial	0.0	0.0	
chr16	89400536	89400716	reg1005776.p2	6.148	+	AK293862 NM_001242885	-13086	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-49670	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-50552	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	156305	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	174188	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	226439	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	2.284218	0.0	denovo_WM_7:-51:0.733	denovo_WM_7:-66:0.754
chr19	41905202	41905322	reg1006822.p2	6.148	+	TSC_hg19_v1_chr19_+_41903725 AK313300 AK298188 BC007878 BC008933 AB209828 J04474	-1530	+	TSC_hg19_v1_chr19_+_41903722 AL833143 BC023983 Z14093	-1542	+	NM_000709 NM_001164783 TSC_hg19_v1_chr19_+_41903714	-1558	+	TSC_hg19_v1_chr19_-_41933283 BC128258 BC128410	28096	-	AY277592 NM_198540	29372	-	AK123631 AK293132 AK301940 AK294249 NM_001167867 NM_001167868	40198	-	AK313300|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AK298188|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC007878|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC008933|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AB209828|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##J04474|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AL833143|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC023983|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##Z14093|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##NM_000709|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##NM_001164783|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AY277592|B3GNT8|374907|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8##NM_198540|B3GNT8|374907|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8##AK123631|ATP5SL|55101|ATP5S-like##AK293132|ATP5SL|55101|ATP5S-like##AK301940|ATP5SL|55101|ATP5S-like##AK294249|ATP5SL|55101|ATP5S-like##NM_001167867|ATP5SL|55101|ATP5S-like##NM_001167868|ATP5SL|55101|ATP5S-like	0.999548	0.0	
chr6	58287759	58287939	reg1007288.p1	6.148	+	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-170	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-1105434	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-1200778	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	4708152	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	5742015	-	TSC_hg19_v1_chr6_+_64231650 CR749458	5943806	+	BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.994815	0.943982	denovo_WM_7:42:0.736	CTCF.p2:-48:0.944
chr7	5273817	5273938	reg1004063.p1	6.148	+	BC016912 AF151808 NM_001033520 AY691426	-19985	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-43892	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-43962	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	48729	+	TSC_hg19_v1_chr7_-_5460842 BC140723	187029	-	AY129022 TSC_hg19_v1_chr7_-_5461555	187664	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.018135	0.0	
chr11	3802693	3802873	reg1007355.p2	6.146	+	AB528800 AJ278118 AJ295237 BC136250 BC143303 AF199235 NM_020402	-110205	-	BC017828 BC069102 NM_004314 S74683 BC111729	-136413	+	NM_053017 NM_001079536 Y16835	-139269	-	TSC_hg19_v1_chr11_-_3803317 EF071958	545	-	TSC_hg19_v1_chr11_-_3818730 AF071076 AF071077	15936	-	TSC_hg19_v1_chr11_-_3818785 AF231130 U41815 AK292882 BC041136 AB038155 AB040538 AK301512	15977	-	AJ278118|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AJ295237|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC136250|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC143303|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AF199235|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##NM_020402|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC017828|ART1|417|ADP-ribosyltransferase 1##BC069102|ART1|417|ADP-ribosyltransferase 1##NM_004314|ART1|417|ADP-ribosyltransferase 1##S74683|ART1|417|ADP-ribosyltransferase 1##BC111729|ART1|417|ADP-ribosyltransferase 1##NM_053017|ART5|116969|ADP-ribosyltransferase 5##NM_001079536|ART5|116969|ADP-ribosyltransferase 5##Y16835|ART5|116969|ADP-ribosyltransferase 5##EF071958|NUP98|4928|nucleoporin 98kDa##AF071076|NUP98|4928|nucleoporin 98kDa##AF071077|NUP98|4928|nucleoporin 98kDa##AF231130|NUP98|4928|nucleoporin 98kDa##U41815|NUP98|4928|nucleoporin 98kDa##AK292882|NUP98|4928|nucleoporin 98kDa##BC041136|NUP98|4928|nucleoporin 98kDa##AB040538|NUP98|4928|nucleoporin 98kDa##AK301512|NUP98|4928|nucleoporin 98kDa	0.998844	0.0	
chr18	49157484	49157600	reg1004791.p2	6.146	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-433502	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-433830	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-434316	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	708999	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	709571	+	TSC_hg19_v1_chr18_-_51690988 AL110266	2533450	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	0.615074	0.0	denovo_WM_7:-17:0.286	denovo_WM_7:-19:0.288
chr19	1372106	1372229	reg1008123.p1	6.146	+	TSC_hg19_v1_chr19_+_1354979 NM_032853 AK310721 U20897	-17166	+	TSC_hg19_v1_chr19_+_1286081 AJ007292 NM_001405 AB463609	-86202	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	-96600	+	TSC_hg19_v1_chr19_+_1383882 AK092169 AX747389 NM_024407 AK128713	11719	+	AK293917 AK297611 TSC_hg19_v1_chr19_+_1383902 AF115969 AK091623 AK127759 AX747100	11733	+	TSC_hg19_v1_chr19_+_1383905 AK222738 BC005954 AF060512	11743	+	NM_032853|MUM1|84939|melanoma associated antigen (mutated) 1##AK310721|MUM1|84939|melanoma associated antigen (mutated) 1##U20897|MUM1|84939|melanoma associated antigen (mutated) 1##AJ007292|EFNA2|1943|ephrin-A2##NM_001405|EFNA2|1943|ephrin-A2##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24##AK092169|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##NM_024407|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK128713|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK293917|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AF115969|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK091623|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK127759|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK222738|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##BC005954|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AF060512|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)	0.0	0.674963	CTCF.p2:1:0.675
chr9	70329428	70329569	reg1007622.p1	6.146	+	NM_001126334	-150684	-	AL136793 NM_001098805	-947518	+	AF265442 BC069006 AK293173 NM_001085457	-1066944	-	NM_001099279 NM_199244	100232	-	CU688346 TSC_hg19_v1_chr9_-_70490092	160583	-	AF265442 TSC_hg19_v1_chr9_-_70490099	160600	-	NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AF265442|CBWD5|220869|COBW domain containing 5	0.996044	0.0	denovo_WM_7:5:0.315	denovo_WM_7:6:0.315	denovo_WM_7:7:0.315
chr2	198172823	198172951	reg1002832.p3	6.144	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-381443	-	BC137150 BC137151 AY358249 NM_213608	-497950	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-508474	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	2495	-	TSC_hg19_v1_chr2_-_198175459 BC063622	2586	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	2632	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.968052	0.0	denovo_WM_7:15:0.754
chr6	42661565	42661730	reg1006278.p1	6.144	+	TSC_hg19_v1_chr6_+_42531956 AY061884 CU687884	-129643	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	-129870	+	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	-129897	+	M62958 M73531 NM_000322 DQ426889	28691	-	TSC_hg19_v1_chr6_-_42713800 BT007002	52149	-	TSC_hg19_v1_chr6_-_42713833 BC020170 AK312681 U61234	52181	-	AY061884|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##M62958|PRPH2|5961|peripherin 2 (retinal degeneration, slow)##M73531|PRPH2|5961|peripherin 2 (retinal degeneration, slow)##NM_000322|PRPH2|5961|peripherin 2 (retinal degeneration, slow)##BT007002|TBCC|6903|tubulin folding cofactor C##BC020170|TBCC|6903|tubulin folding cofactor C##AK312681|TBCC|6903|tubulin folding cofactor C##U61234|TBCC|6903|tubulin folding cofactor C	0.985749	0.0	denovo_WM_7:-8:0.642
chrX	20079215	20079376	reg1006320.p1	6.144	+	AY092822 TSC_hg19_v1_chrX_-_20009180	-70187	-	NM_198279	-90914	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	-173591	-	AK294788 NM_001168467	55457	-	AK027409 TSC_hg19_v1_chrX_-_20135017 AK303019 AK316117 AK296319 BC136379 BC089400 NM_001168465 NM_001168466 NM_152780	55769	-	BT007064 EU831819 EU831896 TSC_hg19_v1_chrX_-_20159957 BC000793 BC110421 AK312320 BC067851 L18960 NM_001412	80581	-	AY092822|LOC729609|729609|uncharacterized LOC729609##NM_198279|CXorf23|256643|chromosome X open reading frame 23##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK294788|MAP7D2|256714|MAP7 domain containing 2##NM_001168467|MAP7D2|256714|MAP7 domain containing 2##AK027409|MAP7D2|256714|MAP7 domain containing 2##AK303019|MAP7D2|256714|MAP7 domain containing 2##AK316117|MAP7D2|256714|MAP7 domain containing 2##AK296319|MAP7D2|256714|MAP7 domain containing 2##BC136379|MAP7D2|256714|MAP7 domain containing 2##BC089400|MAP7D2|256714|MAP7 domain containing 2##NM_001168465|MAP7D2|256714|MAP7 domain containing 2##NM_001168466|MAP7D2|256714|MAP7 domain containing 2##NM_152780|MAP7D2|256714|MAP7 domain containing 2##BT007064|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##EU831819|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##EU831896|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC000793|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC110421|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##AK312320|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC067851|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##L18960|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##NM_001412|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked	0.995824	0.0	
chr11	65479270	65479450	reg1002614.p2	6.143	+	TSC_hg19_v1_chr11_-_65430567 U88316	-48803	-	TSC_hg19_v1_chr11_-_65430427 NM_001145138 NM_001243984 NM_001243985 NM_021975	-48919	-	TSC_hg19_v1_chr11_-_65430388 BC033522 BC011603 BC110830 BC014095 M62399 BC069248 AK308020 AK308478 AK303262	-49046	-	NM_001206833 NM_006388 NM_182709 NM_182710 AK313297 U74667 AK225100 AK226002	137	+	BC117167 BC143290 BC143296 BC093032 TSC_hg19_v1_chr11_+_65479722 AK304664 BC064912 U67734 AB463743 HQ258620 BC013211 BC000166 U40989	415	+	TSC_hg19_v1_chr11_-_65487976 L08647	8609	-	NM_001145138|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243984|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001243985|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_021975|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC033522|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC011603|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC110830|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC014095|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##M62399|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##BC069248|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308020|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK308478|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##AK303262|RELA|5970|v-rel reticuloendotheliosis viral oncogene homolog A (avian)##NM_001206833|KAT5|10524|K(lysine) acetyltransferase 5##NM_006388|KAT5|10524|K(lysine) acetyltransferase 5##NM_182709|KAT5|10524|K(lysine) acetyltransferase 5##NM_182710|KAT5|10524|K(lysine) acetyltransferase 5##AK313297|KAT5|10524|K(lysine) acetyltransferase 5##U74667|KAT5|10524|K(lysine) acetyltransferase 5##AK225100|KAT5|10524|K(lysine) acetyltransferase 5##AK226002|KAT5|10524|K(lysine) acetyltransferase 5##BC117167|KAT5|10524|K(lysine) acetyltransferase 5##BC143290|KAT5|10524|K(lysine) acetyltransferase 5##BC143296|KAT5|10524|K(lysine) acetyltransferase 5##BC093032|KAT5|10524|K(lysine) acetyltransferase 5##AK304664|KAT5|10524|K(lysine) acetyltransferase 5##BC064912|KAT5|10524|K(lysine) acetyltransferase 5##U67734|KAT5|10524|K(lysine) acetyltransferase 5##HQ258620|KAT5|10524|K(lysine) acetyltransferase 5##BC013211|KAT5|10524|K(lysine) acetyltransferase 5##BC000166|KAT5|10524|K(lysine) acetyltransferase 5##U40989|KAT5|10524|K(lysine) acetyltransferase 5##L08647|RNASEH2C|84153|ribonuclease H2, subunit C	0.0	0.0	
chr15	44925554	44925676	reg1006708.p2	6.142	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-96233	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-96273	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-96303	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	30229	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	30265	-	BC036924 NM_001145112	43470	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	1.970449	0.0	
chr7	75943697	75943877	reg1007298.p1	6.142	+	TSC_hg19_v1_chr7_+_75933019 S74571	-10733	+	TSC_hg19_v1_chr7_+_75932877 AK311446	-10877	+	AK311894 TSC_hg19_v1_chr7_+_75931991 BC012768 BC073768 AB020027 AL050380 DQ891304 DQ893349 DQ894489 DQ896669 AB528488 BT019888 CR407614 CR536489 BC014920	-11757	+	AB384983 AF142498 CR541904 CR541925 CU676788 TSC_hg19_v1_chr7_-_75988268	44411	-	AK295029 TSC_hg19_v1_chr7_-_75988309 AB024334 AK024230 AK293505	44506	-	BC020963 TSC_hg19_v1_chr7_-_75988335 NM_012479	44543	-	S74571|HSPB1|3315|heat shock 27kDa protein 1##AK311446|HSPB1|3315|heat shock 27kDa protein 1##AK311894|HSPB1|3315|heat shock 27kDa protein 1##BC012768|HSPB1|3315|heat shock 27kDa protein 1##BC073768|HSPB1|3315|heat shock 27kDa protein 1##AB020027|HSPB1|3315|heat shock 27kDa protein 1##AL050380|HSPB1|3315|heat shock 27kDa protein 1##DQ891304|HSPB1|3315|heat shock 27kDa protein 1##DQ893349|HSPB1|3315|heat shock 27kDa protein 1##DQ894489|HSPB1|3315|heat shock 27kDa protein 1##DQ896669|HSPB1|3315|heat shock 27kDa protein 1##BT019888|HSPB1|3315|heat shock 27kDa protein 1##CR407614|HSPB1|3315|heat shock 27kDa protein 1##CR536489|HSPB1|3315|heat shock 27kDa protein 1##BC014920|HSPB1|3315|heat shock 27kDa protein 1##AF142498|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541904|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##CR541925|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK295029|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AB024334|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK024230|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##AK293505|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##BC020963|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide##NM_012479|YWHAG|7532|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	0.0	1.655865	CTCF.p2:19:0.693	CTCF.p2:-56:0.963
chrX	2699840	2699991	reg1007678.p1	6.142	+	AK304164 NM_001141919 NM_001141920 NM_175569 AF380356 AF534880 BC100764 BC100765 BC100766 BC100767 Z48517 Z48518 Z48519	-29701	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	-90603	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-280927	-	TSC_hg19_v1_chrX_+_2746813 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 U94362 AK098046 AK292496 U94363 BC023152	46987	+	AF160499 TSC_hg19_v1_chrX_-_2847338 AB590968 BC080179 BC020229	147416	-	TSC_hg19_v1_chrX_-_2847384 AK314479 AK021472 X83572 NM_001669	147473	-	AK304164|XG|7499|Xg blood group##NM_001141919|XG|7499|Xg blood group##NM_001141920|XG|7499|Xg blood group##NM_175569|XG|7499|Xg blood group##AF380356|XG|7499|Xg blood group##BC100764|XG|7499|Xg blood group##BC100765|XG|7499|Xg blood group##BC100766|XG|7499|Xg blood group##BC100767|XG|7499|Xg blood group##Z48517|XG|7499|Xg blood group##Z48518|XGPY2|100132596|Xg pseudogene, Y-linked 2##Z48519|XGPY2|100132596|Xg pseudogene, Y-linked 2##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##NM_001079855|GYG2|8908|glycogenin 2##NM_001184702|GYG2|8908|glycogenin 2##NM_001184703|GYG2|8908|glycogenin 2##NM_001184704|GYG2|8908|glycogenin 2##NM_003918|GYG2|8908|glycogenin 2##U94362|GYG2|8908|glycogenin 2##AK098046|GYG2|8908|glycogenin 2##AK292496|GYG2|8908|glycogenin 2##U94363|GYG2|8908|glycogenin 2##BC023152|GYG2|8908|glycogenin 2##AF160499|ARSD|414|arylsulfatase D##BC080179|ARSD|414|arylsulfatase D##BC020229|ARSD|414|arylsulfatase D##AK314479|ARSD|414|arylsulfatase D##AK021472|ARSD|414|arylsulfatase D##X83572|ARSD|414|arylsulfatase D##NM_001669|ARSD|414|arylsulfatase D	0.0	0.0	
chr5	10962360	10962501	reg1007400.p2	6.141	+	TSC_hg19_v1_chr5_-_10761361 NM_004394	-201031	-	TSC_hg19_v1_chr5_-_10761341 BC002726	-201088	-	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	-201171	-	U96136 EU328348 TSC_hg19_v1_chr5_-_11904098 AB013805 NM_001332	941606	-	TSC_hg19_v1_chr5_-_11904184 AK296232	941754	-	AX800026 AY045575 NM_001369	2982158	-	NM_004394|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##U96136|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##EU328348|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AB013805|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_001332|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AK296232|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5	0.170165	0.0	
chrX	94187380	94187542	reg1006820.p2	6.141	+	NM_001171109 NM_001171110 NM_001171111 NM_173698	-1258450	+	AK090772 D50370 TSC_hg19_v1_chrX_-_92928576 BC034954 AK315176 AK223621 BC094729 AK095682 NM_004538	-1258838	-	AJ564931 NM_001168360 NM_001168361 NM_001168362 NM_001168363 AF206516 AF217288 AY861432 AY861433 AY861434 AY861435	-3096980	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	1752290	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	1752493	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	1951509	+	NM_001171109|FAM133A|286499|family with sequence similarity 133, member A##NM_001171110|FAM133A|286499|family with sequence similarity 133, member A##NM_001171111|FAM133A|286499|family with sequence similarity 133, member A##NM_173698|FAM133A|286499|family with sequence similarity 133, member A##AK090772|NAP1L3|4675|nucleosome assembly protein 1-like 3##D50370|NAP1L3|4675|nucleosome assembly protein 1-like 3##BC034954|NAP1L3|4675|nucleosome assembly protein 1-like 3##AK315176|NAP1L3|4675|nucleosome assembly protein 1-like 3##AK223621|NAP1L3|4675|nucleosome assembly protein 1-like 3##BC094729|NAP1L3|4675|nucleosome assembly protein 1-like 3##AK095682|NAP1L3|4675|nucleosome assembly protein 1-like 3##NM_004538|NAP1L3|4675|nucleosome assembly protein 1-like 3##AJ564931|PCDH11X|27328|protocadherin 11 X-linked##NM_001168360|PCDH11X|27328|protocadherin 11 X-linked##NM_001168361|PCDH11X|27328|protocadherin 11 X-linked##NM_001168362|PCDH11X|27328|protocadherin 11 X-linked##NM_001168363|PCDH11X|27328|protocadherin 11 X-linked##AF206516|PCDH11X|27328|protocadherin 11 X-linked##AF217288|PCDH11X|27328|protocadherin 11 X-linked##AY861432|PCDH11X|27328|protocadherin 11 X-linked##AY861433|PCDH11X|27328|protocadherin 11 X-linked##AY861434|PCDH11X|27328|protocadherin 11 X-linked##AY861435|PCDH11X|27328|protocadherin 11 X-linked##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa	0.0	0.0	
chr13	41484561	41484739	reg1006494.p1	6.140	+	AF177333 TSC_hg19_v1_chr13_+_41363756	-120884	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-120966	+	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	-121061	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	11215	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	71546	-	AK304289 BC010575 BC030507 NM_001145353	71738	-	AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.961789	0.0	denovo_WM_7:3:0.552
chr17	40313903	40314014	reg1007389.p2	6.140	+	TSC_hg19_v1_chr17_-_40307015 BC114439 BC106039 NM_001252039 NM_004583 NM_201434	-6920	-	TSC_hg19_v1_chr17_-_40307008 AK310234	-6960	-	TSC_hg19_v1_chr17_-_40306986 U18420	-6997	-	TSC_hg19_v1_chr17_-_40333301 AB022698 NM_012285	19317	-	AB463761 AF041240 NM_001524	23468	-	AK298933 TSC_hg19_v1_chr17_-_40346487 BC022784 AK122777 AK123075 AK307058 BC011056 AK075277 NM_001142622 NM_001142623 NM_032484	32530	-	BC114439|RAB5C|5878|RAB5C, member RAS oncogene family##BC106039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_001252039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_004583|RAB5C|5878|RAB5C, member RAS oncogene family##NM_201434|RAB5C|5878|RAB5C, member RAS oncogene family##AK310234|RAB5C|5878|RAB5C, member RAS oncogene family##U18420|RAB5C|5878|RAB5C, member RAS oncogene family##AB022698|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##NM_012285|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##AF041240|HCRT|3060|hypocretin (orexin) neuropeptide precursor##NM_001524|HCRT|3060|hypocretin (orexin) neuropeptide precursor##AK298933|GHDC|84514|GH3 domain containing##BC022784|GHDC|84514|GH3 domain containing##AK122777|GHDC|84514|GH3 domain containing##AK123075|GHDC|84514|GH3 domain containing##AK307058|GHDC|84514|GH3 domain containing##BC011056|GHDC|84514|GH3 domain containing##AK075277|GHDC|84514|GH3 domain containing##NM_001142622|GHDC|84514|GH3 domain containing##NM_001142623|GHDC|84514|GH3 domain containing##NM_032484|GHDC|84514|GH3 domain containing	0.99124	0.0	
chr13	28133890	28134038	reg1006769.p2	6.139	+	AF265440 TSC_hg19_v1_chr13_-_28024702 BC046166 NM_001166263 NM_152912	-109242	-	TSC_hg19_v1_chr13_-_28024327 BC039599 NM_001166262 NM_001166261	-109655	-	BC143711 D32257 NM_002097 TSC_hg19_v1_chr13_+_27998761 AB590496 U14134 U20272	-135193	+	BC036755 TSC_hg19_v1_chr13_-_28194667	60640	-	TSC_hg19_v1_chr13_-_28194723 AK313394 NM_153371	60763	-	TSC_hg19_v1_chr13_+_28194948 NM_001206559 AK307356	61001	+	BC046166|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166263|MTIF3|219402|mitochondrial translational initiation factor 3##NM_152912|MTIF3|219402|mitochondrial translational initiation factor 3##BC039599|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166262|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166261|MTIF3|219402|mitochondrial translational initiation factor 3##BC143711|GTF3A|2971|general transcription factor IIIA##D32257|GTF3A|2971|general transcription factor IIIA##NM_002097|GTF3A|2971|general transcription factor IIIA##U14134|GTF3A|2971|general transcription factor IIIA##U20272|GTF3A|2971|general transcription factor IIIA##BC036755|LNX2|222484|ligand of numb-protein X 2##AK313394|LNX2|222484|ligand of numb-protein X 2##NM_153371|LNX2|222484|ligand of numb-protein X 2##NM_001206559|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa##AK307356|POLR1D|51082|polymerase (RNA) I polypeptide D, 16kDa	0.998211	0.0	denovo_WM_7:0:0.840
chr22	17279050	17279199	reg1007034.p2	6.139	+	CU689750 BC139842 BC139926 CU013107 CU013395 DQ892082 DQ895275 GQ129410 GQ129411 AB462978 CR456508 BC100811 BC100812 BC100813 BC022006 BC033797 NM_014406	-205555	-	NM_001005239	-829321	-	BC127623 AY465171 AY465172 AY466021 NM_001136213	-991198	-	BC137521 BC137522 BC144679 AY989815 AK098608 AY534240 BC045548 NM_175878	23445	-	AB076978 NM_001037814	209987	-	TSC_hg19_v1_chr22_+_17565850 NM_014339	286727	+	BC139842|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC139926|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##DQ892082|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##DQ895275|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##GQ129410|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##GQ129411|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##CR456508|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100811|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100812|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100813|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC022006|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC033797|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##NM_014406|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##NM_001005239|OR11H1|81061|olfactory receptor, family 11, subfamily H, member 1##BC127623|POTEG|404785|POTE ankyrin domain family, member G##AY465171|POTEG|404785|POTE ankyrin domain family, member G##AY465172|POTEG|404785|POTE ankyrin domain family, member G##AY466021|POTEH|23784|POTE ankyrin domain family, member H##NM_001136213|POTEH|23784|POTE ankyrin domain family, member H##BC137521|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC137522|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC144679|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AY989815|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AK098608|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AY534240|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC045548|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##NM_175878|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AB076978|GAB4|128954|GRB2-associated binding protein family, member 4##NM_001037814|GAB4|128954|GRB2-associated binding protein family, member 4##NM_014339|IL17RA|23765|interleukin 17 receptor A	0.979708	0.0	denovo_WM_7:-44:0.595	denovo_WM_7:-45:0.384
chr3	75612325	75612462	reg1009500.p1	6.139	+	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	-128244	-	AB384611 BC150608 NM_020872	-1042091	-	AB384112 BC014432 BC150623 AB029018 BC152417 NM_015009 TSC_hg19_v1_chr3_-_73674093	-1938355	-	AK000525 NM_001124759	101090	+	BC111371 TSC_hg19_v1_chr3_+_75721431 BC039495	109093	+	NM_001128223	221861	-	BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC014432|PDZRN3|23024|PDZ domain containing ring finger 3##BC150623|PDZRN3|23024|PDZ domain containing ring finger 3##AB029018|PDZRN3|23024|PDZ domain containing ring finger 3##BC152417|PDZRN3|23024|PDZ domain containing ring finger 3##NM_015009|PDZRN3|23024|PDZ domain containing ring finger 3##AK000525|FLJ20518|647476|FSHD region gene 2 family, member C pseudogene##NM_001124759|FRG2C|100288801|FSHD region gene 2 family, member C##BC111371|LOC401074|401074|uncharacterized LOC401074##BC039495|LOC401074|401074|uncharacterized LOC401074##NM_001128223|ZNF717|100131827|zinc finger protein 717	1.062223	0.0	
chr5	140795272	140795428	reg1004926.p2	6.139	+	TSC_hg19_v1_chr5_+_140792580 BC014509 BC093873 BC093875 AF152319 AF152503 NM_018913 NM_032090	-2726	+	AF152335 AF152522 NM_018926 NM_032100	-7581	+	TSC_hg19_v1_chr5_+_140782367 BC132769 AF152329 AF152516 NM_018921 NM_032089	-12907	+	TSC_hg19_v1_chr5_+_140797217 NM_032101	1866	+	TSC_hg19_v1_chr5_+_140797246 NM_018927	1901	+	TSC_hg19_v1_chr5_+_140797279 AF152336 AF152523	1998	+	BC014509|PCDHGA10|56106|protocadherin gamma subfamily A, 10##BC093873|PCDHGA10|56106|protocadherin gamma subfamily A, 10##BC093875|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152319|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152503|PCDHGA10|56106|protocadherin gamma subfamily A, 10##NM_018913|PCDHGA10|56106|protocadherin gamma subfamily A, 10##NM_032090|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152335|PCDHGB6|56100|protocadherin gamma subfamily B, 6##AF152522|PCDHGB6|56100|protocadherin gamma subfamily B, 6##NM_018926|PCDHGB6|56100|protocadherin gamma subfamily B, 6##NM_032100|PCDHGB6|56100|protocadherin gamma subfamily B, 6##BC132769|PCDHGA9|56107|protocadherin gamma subfamily A, 9##AF152329|PCDHGA9|56107|protocadherin gamma subfamily A, 9##AF152516|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_018921|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_032089|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_032101|PCDHGB7|56099|protocadherin gamma subfamily B, 7##NM_018927|PCDHGB7|56099|protocadherin gamma subfamily B, 7##AF152336|PCDHGB7|56099|protocadherin gamma subfamily B, 7##AF152523|PCDHGB7|56099|protocadherin gamma subfamily B, 7	1.989914	0.0	denovo_WM_7:-17:0.448	denovo_WM_7:-18:0.300	denovo_WM_7:-33:0.322	denovo_WM_7:-34:0.471
chr7	100209481	100209575	reg1006177.p1	6.139	+	NM_002593 TSC_hg19_v1_chr7_+_100199985 AK313748 BC000574 L33799 AB008549 AK298364 BC033205 DQ891923 DQ895108	-9549	+	AK302252 NM_001163499 NM_012172 AK301864	-22305	+	TSC_hg19_v1_chr7_+_100183929 AK292240 NM_033506 BC032497 AK310487 AL136811 BC067293 BC051745	-25526	+	NM_001040097 TSC_hg19_v1_chr7_+_100209784	241	+	TSC_hg19_v1_chr7_+_100210156 NM_001040098 NM_001040099 NM_023948 BC011653 BC009482 BC028475 BC005042	544	+	TSC_hg19_v1_chr7_-_100230676 AK000421	21173	-	NM_002593|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK313748|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC000574|PCOLCE|5118|procollagen C-endopeptidase enhancer##L33799|PCOLCE|5118|procollagen C-endopeptidase enhancer##AB008549|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK298364|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC033205|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ891923|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ895108|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK302252|FBXO24|26261|F-box protein 24##NM_001163499|FBXO24|26261|F-box protein 24##NM_012172|FBXO24|26261|F-box protein 24##AK301864|FBXO24|26261|F-box protein 24##AK292240|FBXO24|26261|F-box protein 24##NM_033506|FBXO24|26261|F-box protein 24##BC032497|FBXO24|26261|F-box protein 24##AK310487|FBXO24|26261|F-box protein 24##AL136811|FBXO24|26261|F-box protein 24##BC067293|FBXO24|26261|F-box protein 24##BC051745|FBXO24|26261|F-box protein 24##NM_001040097|MOSPD3|64598|motile sperm domain containing 3##NM_001040098|MOSPD3|64598|motile sperm domain containing 3##NM_001040099|MOSPD3|64598|motile sperm domain containing 3##NM_023948|MOSPD3|64598|motile sperm domain containing 3##BC011653|MOSPD3|64598|motile sperm domain containing 3##BC009482|MOSPD3|64598|motile sperm domain containing 3##BC028475|MOSPD3|64598|motile sperm domain containing 3##BC005042|MOSPD3|64598|motile sperm domain containing 3##AK000421|TFR2|7036|transferrin receptor 2	0.999169	0.0	denovo_WM_7:-68:0.239	denovo_WM_7:-69:0.239	denovo_WM_7:-70:0.239	denovo_WM_7:-71:0.239
chr8	119520583	119520726	reg1007994.p2	6.139	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-396693	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-987612	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-987696	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	113471	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	113553	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	443566	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.704392	0.0	denovo_WM_7:36:0.286
chr8	12445802	12445920	reg1007436.p1	6.139	+	BC085016 TSC_hg19_v1_chr8_-_12293910 AK291001 AK298940	-151957	-	AK309984 NM_001137610 AK098138 AK308513 TSC_hg19_v1_chr8_-_12293868 AK297741 AK308439	-152018	-	DQ012022 NM_001037804 NM_001195257	-270037	-	TSC_hg19_v1_chr8_-_12612974 NM_152271	167143	-	AK296010 NM_020844	357305	+	AB040889 NM_001099677	423911	+	BC085016|FAM86B1|85002|family with sequence similarity 86, member B1##AK291001|FAM86B2|653333|family with sequence similarity 86, member B2##AK298940|FAM86B2|653333|family with sequence similarity 86, member B2##AK309984|FAM86B2|653333|family with sequence similarity 86, member B2##NM_001137610|FAM86B2|653333|family with sequence similarity 86, member B2##AK098138|FAM86B1|85002|family with sequence similarity 86, member B1##AK308513|FAM86B1|85002|family with sequence similarity 86, member B1##AK297741|FAM86B2|653333|family with sequence similarity 86, member B2##AK308439|FAM86B1|85002|family with sequence similarity 86, member B1##DQ012022|DEFB130|245940|defensin, beta 130##NM_001037804|DEFB130|245940|defensin, beta 130##NM_001195257|LOC100133267|100133267|defensin, beta 130-like##NM_152271|LONRF1|91694|LON peptidase N-terminal domain and ring finger 1##AK296010|KIAA1456|57604|KIAA1456##NM_020844|KIAA1456|57604|KIAA1456##AB040889|KIAA1456|57604|KIAA1456##NM_001099677|KIAA1456|57604|KIAA1456	0.992077	0.0	denovo_WM_7:10:0.442	denovo_WM_7:11:0.442
chr9	21465962	21466115	reg1007514.p1	6.139	+	NM_024013 V00538 V00537 BC112300 BC112302 BC074928 BC074929 AB464595 CU686802 HQ258738 JN848523	-25559	+	K01900 NM_002170 BC104828 BC104830 V00545 V00550	-56898	+	AY255838 V00548 AB590747 CR541921 JN848522 BC074936 BC074937 BC104163 BC104164 M54886 V00544 V00549 NM_000605	-80712	-	AY358570 NM_176891	16273	-	AK124391 TSC_hg19_v1_chr9_-_21559834	93744	-	TSC_hg19_v1_chr9_+_21802647 AF109294 AY712791 NM_002451 U22233 L40432 AK300592 AK309365	336602	+	NM_024013|IFNA1|3439|interferon, alpha 1##V00538|IFNA1|3439|interferon, alpha 1##V00537|IFNA1|3439|interferon, alpha 1##BC112300|IFNA1|3439|interferon, alpha 1##BC112302|IFNA1|3439|interferon, alpha 1##BC074928|IFNA1|3439|interferon, alpha 1##BC074929|IFNA1|3439|interferon, alpha 1##HQ258738|IFNA1|3439|interferon, alpha 1##K01900|IFNA8|3445|interferon, alpha 8##NM_002170|IFNA8|3445|interferon, alpha 8##BC104828|IFNA8|3445|interferon, alpha 8##BC104830|IFNA8|3445|interferon, alpha 8##V00545|IFNA8|3445|interferon, alpha 8##V00550|IFNA8|3445|interferon, alpha 8##AY255838|IFNA2|3440|interferon, alpha 2##V00548|IFNA2|3440|interferon, alpha 2##CR541921|IFNA2|3440|interferon, alpha 2##BC074936|IFNA2|3440|interferon, alpha 2##BC074937|IFNA2|3440|interferon, alpha 2##BC104163|IFNA2|3440|interferon, alpha 2##BC104164|IFNA2|3440|interferon, alpha 2##M54886|IFNA2|3440|interferon, alpha 2##V00544|IFNA2|3440|interferon, alpha 2##V00549|IFNA2|3440|interferon, alpha 2##NM_000605|IFNA2|3440|interferon, alpha 2##AY358570|IFNE|338376|interferon, epsilon##NM_176891|IFNE|338376|interferon, epsilon##AK124391|MIR31HG|554202|MIR31 host gene (non-protein coding)##AF109294|MTAP|4507|methylthioadenosine phosphorylase##AY712791|MTAP|4507|methylthioadenosine phosphorylase##NM_002451|MTAP|4507|methylthioadenosine phosphorylase##U22233|MTAP|4507|methylthioadenosine phosphorylase##L40432|MTAP|4507|methylthioadenosine phosphorylase##AK300592|MTAP|4507|methylthioadenosine phosphorylase##AK309365|MTAP|4507|methylthioadenosine phosphorylase	0.963116	0.957091	denovo_WM_7:-4:0.400	denovo_WM_7:-5:0.357	CTCF.p2:75:0.957
chr17	715094	715195	reg1005007.p2	6.138	+	BC011550 TSC_hg19_v1_chr17_+_685611 BC050614 AK225128 AB590841 CU679954 CU690740	-29530	+	AF177344 NM_018146 TSC_hg19_v1_chr17_+_685592 AK001443 AK222900	-29586	+	TSC_hg19_v1_chr17_-_685521 AK226083 AK292315 BC008605 CU677471 AK296584 AF061730 AF177342 AK301751 BC010902 BC015848 AK001488 AF177343 NM_016080	-29664	-	BC009327 AK302073 NM_001205319	52174	-	TSC_hg19_v1_chr17_-_882986 AB590045 NM_022463	167856	-	TSC_hg19_v1_chr17_+_900368 BC002324 NM_013337 AK000830 AK225453 AF155330	185211	+	BC011550|RNMTL1|55178|RNA methyltransferase like 1##BC050614|RNMTL1|55178|RNA methyltransferase like 1##AK225128|RNMTL1|55178|RNA methyltransferase like 1##AF177344|RNMTL1|55178|RNA methyltransferase like 1##NM_018146|RNMTL1|55178|RNA methyltransferase like 1##AK001443|RNMTL1|55178|RNA methyltransferase like 1##AK222900|RNMTL1|55178|RNA methyltransferase like 1##AK226083|GLOD4|51031|glyoxalase domain containing 4##AK292315|GLOD4|51031|glyoxalase domain containing 4##BC008605|GLOD4|51031|glyoxalase domain containing 4##AK296584|GLOD4|51031|glyoxalase domain containing 4##AF061730|GLOD4|51031|glyoxalase domain containing 4##AF177342|GLOD4|51031|glyoxalase domain containing 4##AK301751|GLOD4|51031|glyoxalase domain containing 4##BC010902|GLOD4|51031|glyoxalase domain containing 4##BC015848|GLOD4|51031|glyoxalase domain containing 4##AK001488|GLOD4|51031|glyoxalase domain containing 4##AF177343|GLOD4|51031|glyoxalase domain containing 4##NM_016080|GLOD4|51031|glyoxalase domain containing 4##BC009327|NXN|64359|nucleoredoxin##AK302073|NXN|64359|nucleoredoxin##NM_001205319|NXN|64359|nucleoredoxin##NM_022463|NXN|64359|nucleoredoxin##BC002324|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##NM_013337|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK000830|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK225453|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AF155330|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)	1.023115	0.0	
chr6	149387433	149387565	reg1006130.p2	6.138	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-319290	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-723308	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-723509	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	251604	+	AK315038 NM_015093 AK307650	251942	+	AY340238 NM_001002255 BC130305 HQ258040	334009	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.0	0.0	
chr17	44221243	44221421	reg1007536.p1	6.137	+	TSC_hg19_v1_chr17_+_44101553 AB073354	-119762	+	BC130319 BC130321 NM_001007532 AY179170	-144702	+	TSC_hg19_v1_chr17_+_44068829 AY526356	-152498	+	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	48822	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	48977	-	AK291259 NM_001193465	81395	-	AB073354|MAPT|4137|microtubule-associated protein tau##BC130319|STH|246744|saitohin##BC130321|STH|246744|saitohin##NM_001007532|STH|246744|saitohin##AY179170|STH|246744|saitohin##AY526356|MAPT|4137|microtubule-associated protein tau##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267	0.0	0.0	
chr3	56829934	56830087	reg1006724.p2	6.137	+	AK293864 AB209661 NM_001128616	-20341	-	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-112803	-	BC029354 NM_015224	-131937	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	5901	-	AY221117 NM_181727 BC126274 BC136498	264493	+	AF433662 AK302493 NM_001128615	283303	-	AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3	0.987599	0.0	denovo_WM_7:1:0.812
chr17_ctg5_hap1	493777	493957	reg1005222.p2	6.136	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.351	0.0	denovo_WM_7:-5:0.327
chr2	214030951	214031121	reg1006382.p1	6.136	+	BC028936 NM_001079526	-14704	-	AK301503 AF130863 NM_016260	-15981	-	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	-627721	-	AK124960 NM_001242575	117892	-	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	118121	+	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	1245424	+	BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like	0.0	0.0	
chr5	21459376	21459540	reg1006154.p1	6.136	+	AK295087 BC031051 NM_001167667 NM_004934	-1471136	-	TSC_hg19_v1_chr5_+_17217804 AF039656	-4241618	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-4241846	+	TSC_hg19_v1_chr5_+_21459621 AK290693	151	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	190	+	TSC_hg19_v1_chr5_-_22212879 AK314800	753423	-	AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK314800|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)	0.998956	0.939176	CTCF.p2:37:0.939	denovo_WM_7:-49:0.518	denovo_WM_7:-50:0.462
chr9	132979005	132979089	reg1004511.p1	6.135	+	NM_001128826	-16176	+	TSC_hg19_v1_chr9_+_132934685 BC004856 NM_014286 AF134479 AF186409 X84048 AB463656	-44234	+	AK024651 TSC_hg19_v1_chr9_+_132897386	-81683	+	NM_000050 NM_054012	341046	+	TSC_hg19_v1_chr9_+_133320348 BC009243 AK304625 AK293114 AK315093 AK027126 BC021676 BC013224	341255	+	TSC_hg19_v1_chr9_-_133454851 AK056037	475802	-	NM_001128826|NCS1|23413|neuronal calcium sensor 1##BC004856|NCS1|23413|neuronal calcium sensor 1##NM_014286|NCS1|23413|neuronal calcium sensor 1##AF134479|NCS1|23413|neuronal calcium sensor 1##AF186409|NCS1|23413|neuronal calcium sensor 1##X84048|NCS1|23413|neuronal calcium sensor 1##AK024651|GPR107|57720|G protein-coupled receptor 107##NM_000050|ASS1|445|argininosuccinate synthase 1##NM_054012|ASS1|445|argininosuccinate synthase 1##BC009243|ASS1|445|argininosuccinate synthase 1##AK304625|ASS1|445|argininosuccinate synthase 1##AK293114|ASS1|445|argininosuccinate synthase 1##AK315093|ASS1|445|argininosuccinate synthase 1##AK027126|ASS1|445|argininosuccinate synthase 1##BC021676|ASS1|445|argininosuccinate synthase 1##BC013224|ASS1|445|argininosuccinate synthase 1##AK056037|LOC100272217|100272217|uncharacterized LOC100272217	0.995666	0.0	denovo_WM_7:-43:0.456	denovo_WM_7:-44:0.456
chr10	76888848	76888975	reg1004975.p2	6.134	+	TSC_hg19_v1_chr10_+_76871413 BC080593 NM_001174156 NM_144660 AK057811	-17494	+	BC009778 AY040091 AK057012 AY674051 AK291897 AK300679 AK127886 NM_001007271 NM_001007272 NM_001007273 AK291891	-19997	-	AB027004 AB103375 NM_016364	-29664	-	NM_001184823	81000	+	NM_001184783 NM_003375	81388	+	TSC_hg19_v1_chr10_+_76970563 BC000165 BC072407 AK315919 AK296635	81643	+	BC080593|SAMD8|142891|sterile alpha motif domain containing 8##NM_001174156|SAMD8|142891|sterile alpha motif domain containing 8##NM_144660|SAMD8|142891|sterile alpha motif domain containing 8##AK057811|SAMD8|142891|sterile alpha motif domain containing 8##BC009778|DUSP13|51207|dual specificity phosphatase 13##AY040091|DUSP13|51207|dual specificity phosphatase 13##AK057012|DUSP13|51207|dual specificity phosphatase 13##AY674051|DUSP13|51207|dual specificity phosphatase 13##AK291897|DUSP13|51207|dual specificity phosphatase 13##AK300679|DUSP13|51207|dual specificity phosphatase 13##AK127886|DUSP13|51207|dual specificity phosphatase 13##NM_001007271|DUSP13|51207|dual specificity phosphatase 13##NM_001007272|DUSP13|51207|dual specificity phosphatase 13##NM_001007273|DUSP13|51207|dual specificity phosphatase 13##AK291891|DUSP13|51207|dual specificity phosphatase 13##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13##NM_001184823|VDAC2|7417|voltage-dependent anion channel 2##NM_001184783|VDAC2|7417|voltage-dependent anion channel 2##NM_003375|VDAC2|7417|voltage-dependent anion channel 2##BC000165|VDAC2|7417|voltage-dependent anion channel 2##BC072407|VDAC2|7417|voltage-dependent anion channel 2##AK315919|VDAC2|7417|voltage-dependent anion channel 2##AK296635|VDAC2|7417|voltage-dependent anion channel 2	1.522965	0.0	denovo_WM_7:-8:0.357	denovo_WM_7:-9:0.207	denovo_WM_7:-10:0.204	denovo_WM_7:97:0.397
chr11	73239988	73240105	reg1007037.p1	6.134	+	TSC_hg19_v1_chr11_+_73087683 AF319553 NM_032871	-152355	+	TSC_hg19_v1_chr11_+_73087471 AK027899 NM_152222 BC051810 BC017279	-152609	+	TSC_hg19_v1_chr11_-_73020422 AK300095	-219623	-	D87470 TSC_hg19_v1_chr11_-_73309158 AK292054 EF197985 BC052341 EF363480 NM_015159	69152	-	AF101054 NM_001130033 NM_021200 U89715	117176	+	NM_001130034 NM_001130035 BC008075 AB209716 AK289620 TSC_hg19_v1_chr11_+_73358695 AK296033 AK301299 AF093249 AF100612 AK289909 AK311158	118617	+	AF319553|RELT|84957|RELT tumor necrosis factor receptor##NM_032871|RELT|84957|RELT tumor necrosis factor receptor##AK027899|RELT|84957|RELT tumor necrosis factor receptor##NM_152222|RELT|84957|RELT tumor necrosis factor receptor##BC051810|RELT|84957|RELT tumor necrosis factor receptor##BC017279|RELT|84957|RELT tumor necrosis factor receptor##AK300095|LOC100287837|100287837|uncharacterized LOC100287837##D87470|FAM168A|23201|family with sequence similarity 168, member A##AK292054|FAM168A|23201|family with sequence similarity 168, member A##EF197985|FAM168A|23201|family with sequence similarity 168, member A##BC052341|FAM168A|23201|family with sequence similarity 168, member A##EF363480|FAM168A|23201|family with sequence similarity 168, member A##NM_015159|FAM168A|23201|family with sequence similarity 168, member A##AF101054|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_021200|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##U89715|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130034|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130035|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##BC008075|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AB209716|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289620|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK296033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK301299|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF093249|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF100612|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289909|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK311158|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1	0.0	0.0	
chr19	14202619	14202799	reg1000222.p2	6.134	+	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	-1433	-	NM_001145028	-32739	-	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-60062	+	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	22345	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	25751	-	TSC_hg19_v1_chr19_-_14228563 AK290147	25860	-	AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##NM_001145028|PALM3|342979|paralemmin 3##BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK290147|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.0	0.0	
chr2	143962830	143962958	reg1005623.p2	6.134	+	TSC_hg19_v1_chr2_+_143886987 AK303490 BC016701 BC038976	-75903	+	NM_018460 BC029346 TSC_hg19_v1_chr2_+_143886947 AK308219 AF212222 AF217507 AF217522 AY219338 AK226014	-75964	+	BC000879 TSC_hg19_v1_chr2_+_143635232 AK292095 AK315343 AK290900	-327654	+	NM_024659	1032011	-	AY281366 NM_001006636	1089165	-	BC017741 AK291357 TSC_hg19_v1_chr2_-_145090037 BC061699	1127138	-	AK303490|ARHGAP15|55843|Rho GTPase activating protein 15##BC016701|ARHGAP15|55843|Rho GTPase activating protein 15##BC038976|ARHGAP15|55843|Rho GTPase activating protein 15##NM_018460|ARHGAP15|55843|Rho GTPase activating protein 15##AK308219|ARHGAP15|55843|Rho GTPase activating protein 15##AF212222|ARHGAP15|55843|Rho GTPase activating protein 15##AF217507|ARHGAP15|55843|Rho GTPase activating protein 15##AF217522|ARHGAP15|55843|Rho GTPase activating protein 15##AY219338|ARHGAP15|55843|Rho GTPase activating protein 15##AK226014|ARHGAP15|55843|Rho GTPase activating protein 15##BC000879|KYNU|8942|kynureninase##AK292095|KYNU|8942|kynureninase##AK315343|KYNU|8942|kynureninase##AK290900|KYNU|8942|kynureninase##NM_024659|GTDC1|79712|glycosyltransferase-like domain containing 1##AY281366|GTDC1|79712|glycosyltransferase-like domain containing 1##NM_001006636|GTDC1|79712|glycosyltransferase-like domain containing 1##BC017741|GTDC1|79712|glycosyltransferase-like domain containing 1##AK291357|GTDC1|79712|glycosyltransferase-like domain containing 1##BC061699|GTDC1|79712|glycosyltransferase-like domain containing 1	0.997868	0.883334	CTCF.p2:44:0.883	denovo_WM_7:-59:0.295	denovo_WM_7:-60:0.295	denovo_WM_7:-61:0.295
chr7	74554477	74554648	reg1007161.p1	6.133	+	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-46188	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-64870	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-64924	-	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	312958	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	434008	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	470403	+	NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73	1.981564	0.0	denovo_WM_7:79:0.302	denovo_WM_7:80:0.302	denovo_WM_7:81:0.302	denovo_WM_7:-84:0.331	denovo_WM_7:-85:0.331	denovo_WM_7:-86:0.331
chr16	31056052	31056196	reg1008443.p1	6.132	+	TSC_hg19_v1_chr16_+_31044881 AK296652 BC002436 NM_004604	-11231	+	TSC_hg19_v1_chr16_+_31044856 AK315716	-11269	+	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	-11708	+	AK308239 NM_001172669 NM_001172670	20284	-	NM_001172668	28698	-	TSC_hg19_v1_chr16_-_31085074 AK315623 AK027398	29011	-	AK296652|STX4|6810|syntaxin 4##BC002436|STX4|6810|syntaxin 4##NM_004604|STX4|6810|syntaxin 4##AK315716|STX4|6810|syntaxin 4##AK091833|STX4|6810|syntaxin 4##AK308239|ZNF668|79759|zinc finger protein 668##NM_001172669|ZNF668|79759|zinc finger protein 668##NM_001172670|ZNF668|79759|zinc finger protein 668##NM_001172668|ZNF668|79759|zinc finger protein 668##AK315623|ZNF668|79759|zinc finger protein 668##AK027398|ZNF668|79759|zinc finger protein 668	0.995666	0.0	denovo_WM_7:-22:0.456	denovo_WM_7:-23:0.456
chr1	75153882	75154002	reg1005712.p2	6.132	+	AK127470 NM_001002912	-14521	-	NM_015978 AF116826 AK307984 BC113539 BC117262 AY303691 HQ258528	-452840	+	NM_001112808 NM_001199327 NM_001199328 NM_001199329 NM_003838 TSC_hg19_v1_chr1_+_74663927 BC020720 AK294948 AF017445 AK304490 BC032865 AK223254 BC032308 AK299468	-490006	+	TSC_hg19_v1_chr1_-_75198733 AK128794 BX647883 BC039578 AK223150 AK223201 AB209714 AK314813 BC070058	44770	-	NM_001162916 AK098237 BC071765 NM_138467 AK294264 AK299849 BC009514 AK311272 AB590606	44938	+	NM_001130042 NM_001130043 NM_001134759 NM_001889	45149	-	AK127470|C1orf173|127254|chromosome 1 open reading frame 173##NM_001002912|C1orf173|127254|chromosome 1 open reading frame 173##NM_015978|TNNI3K|51086|TNNI3 interacting kinase##AF116826|TNNI3K|51086|TNNI3 interacting kinase##AK307984|TNNI3K|51086|TNNI3 interacting kinase##BC113539|TNNI3K|51086|TNNI3 interacting kinase##BC117262|TNNI3K|51086|TNNI3 interacting kinase##AY303691|TNNI3K|51086|TNNI3 interacting kinase##HQ258528|TNNI3K|51086|TNNI3 interacting kinase##NM_001112808|FPGT-TNNI3K|100526835|FPGT-TNNI3K readthrough##NM_001199327|FPGT-TNNI3K|100526835|FPGT-TNNI3K readthrough##NM_001199328|FPGT|8790|fucose-1-phosphate guanylyltransferase##NM_001199329|FPGT|8790|fucose-1-phosphate guanylyltransferase##NM_003838|FPGT|8790|fucose-1-phosphate guanylyltransferase##BC020720|FPGT|8790|fucose-1-phosphate guanylyltransferase##AK294948|FPGT|8790|fucose-1-phosphate guanylyltransferase##AF017445|FPGT|8790|fucose-1-phosphate guanylyltransferase##AK304490|FPGT|8790|fucose-1-phosphate guanylyltransferase##BC032865|FPGT-TNNI3K|100526835|FPGT-TNNI3K readthrough##AK223254|FPGT|8790|fucose-1-phosphate guanylyltransferase##BC032308|FPGT|8790|fucose-1-phosphate guanylyltransferase##AK299468|FPGT|8790|fucose-1-phosphate guanylyltransferase##AK128794|CRYZ|1429|crystallin, zeta (quinone reductase)##BX647883|CRYZ|1429|crystallin, zeta (quinone reductase)##BC039578|CRYZ|1429|crystallin, zeta (quinone reductase)##AK223150|CRYZ|1429|crystallin, zeta (quinone reductase)##AK223201|CRYZ|1429|crystallin, zeta (quinone reductase)##AB209714|CRYZ|1429|crystallin, zeta (quinone reductase)##AK314813|CRYZ|1429|crystallin, zeta (quinone reductase)##BC070058|CRYZ|1429|crystallin, zeta (quinone reductase)##NM_001162916|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##AK098237|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##BC071765|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##NM_138467|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##AK294264|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##AK299849|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##BC009514|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##AK311272|TYW3|127253|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)##NM_001130042|CRYZ|1429|crystallin, zeta (quinone reductase)##NM_001130043|CRYZ|1429|crystallin, zeta (quinone reductase)##NM_001134759|CRYZ|1429|crystallin, zeta (quinone reductase)##NM_001889|CRYZ|1429|crystallin, zeta (quinone reductase)	0.21761	0.0	
chr22	45224198	45224324	reg1007262.p1	6.132	+	AK001306 NM_001017526 NM_001198726 NM_181335 BC059382 BC067824 BC048280	-75800	+	AK291564 TSC_hg19_v1_chr22_+_45098246 AF177331 AL355192 NM_181334	-126008	+	TSC_hg19_v1_chr22_+_45098090 NM_181333	-126193	+	TSC_hg19_v1_chr22_-_45404785 AK299836 AK297317 AK091480 AX747013 NM_001242450	180568	-	AB489146 CU012999 CU013287 CU680262 CR456448 BC012187 NM_138415	181243	-	TSC_hg19_v1_chr22_-_45405781 AK092243 AX747427 NM_001135862	181533	-	AK001306|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001017526|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001198726|ARHGAP8|23779|Rho GTPase activating protein 8##NM_181335|ARHGAP8|23779|Rho GTPase activating protein 8##BC059382|ARHGAP8|23779|Rho GTPase activating protein 8##BC067824|ARHGAP8|23779|Rho GTPase activating protein 8##BC048280|ARHGAP8|23779|Rho GTPase activating protein 8##AK291564|PRR5|55615|proline rich 5 (renal)##AF177331|PRR5|55615|proline rich 5 (renal)##AL355192|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181334|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181333|PRR5|55615|proline rich 5 (renal)##AK299836|PHF21B|112885|PHD finger protein 21B##AK297317|PHF21B|112885|PHD finger protein 21B##AK091480|PHF21B|112885|PHD finger protein 21B##NM_001242450|PHF21B|112885|PHD finger protein 21B##CU012999|PHF21B|112885|PHD finger protein 21B##CU013287|PHF21B|112885|PHD finger protein 21B##CR456448|PHF21B|112885|PHD finger protein 21B##BC012187|PHF21B|112885|PHD finger protein 21B##NM_138415|PHF21B|112885|PHD finger protein 21B##AK092243|PHF21B|112885|PHD finger protein 21B##NM_001135862|PHF21B|112885|PHD finger protein 21B	0.997734	0.301743	CTCF.p2:-8:0.302
chr4	153469237	153469376	reg1005288.p2	6.132	+	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-11873	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-13012	-	NM_001013415 AY008274	-165642	-	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	131894	-	BC037869 NM_145720	231597	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	231715	+	AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	1.992584	0.0	denovo_WM_7:-71:0.331	denovo_WM_7:-72:0.265	denovo_WM_7:-89:0.266	denovo_WM_7:-90:0.332
chr7	3079833	3079989	reg1009153.p1	6.132	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-196103	-	AK289723 AB075830 BC146753 NM_133463	-360753	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-408208	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	3551	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	261088	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1641927	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	1.962941	0.0	denovo_WM_7:59:0.484	denovo_WM_7:60:0.490	denovo_WM_7:76:0.477	denovo_WM_7:77:0.477
chrX	58052513	58052693	reg1009174.p1	6.132	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-115644	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-434143	+	NM_007157	-434335	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4518596	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4595664	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4728264	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	0.836288	CTCF.p2:33:0.836
chr16	88522731	88522865	reg1004421.p1	6.131	+	TSC_hg19_v1_chr16_+_88519921 NM_153813	-2833	+	TSC_hg19_v1_chr16_+_88519687 AF488691	-3093	+	NM_001127464	-28920	+	TSC_hg19_v1_chr16_+_88636807 NM_144604	113934	+	AK300254 AK302716 TSC_hg19_v1_chr16_+_88636810	114012	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	114030	+	NM_153813|ZFPM1|161882|zinc finger protein, multitype 1##AF488691|ZFPM1|161882|zinc finger protein, multitype 1##NM_001127464|ZNF469|84627|zinc finger protein 469##NM_144604|ZC3H18|124245|zinc finger CCCH-type containing 18##AK300254|ZC3H18|124245|zinc finger CCCH-type containing 18##AK302716|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18	0.953774	0.128661	denovo_WM_7:14:0.626
chr21	39640480	39640597	reg1002765.p2	6.131	+	D87291 NM_170736 AK292812	-11609	+	BC013327 NM_002243	-11875	+	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	-147137	-	NM_170737	3890	+	AB489170 AM392572 CU691828 EU446470 AK304662 AK303518 BC040168 AK300395 NM_001136155 NM_182918	229827	-	M21535 NM_001243429	316307	-	D87291|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_170736|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AK292812|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##NM_170737|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AM392572|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##EU446470|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK304662|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK303518|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##BC040168|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##AK300395|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_001136155|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_182918|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##M21535|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)##NM_001243429|ERG|2078|v-ets erythroblastosis virus E26 oncogene homolog (avian)	1.991318	0.0	denovo_WM_7:-40:0.754	denovo_WM_7:-55:0.246	denovo_WM_7:-56:0.297	denovo_WM_7:-57:0.348
chr10	23012537	23012717	reg1006636.p1	6.130	+	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	-9137	-	AK294817 TSC_hg19_v1_chr10_-_23003038	-9590	-	TSC_hg19_v1_chr10_+_22726003 AK295718	-286628	+	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	204354	+	BC117471 BC130380 NM_012228 BC018030 TSC_hg19_v1_chr10_+_23384507 AF151889 BC066305 AF122004 EU446941	371856	+	AB463998 NM_178161	468831	+	BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3##BC117471|MSRB2|22921|methionine sulfoxide reductase B2##BC130380|MSRB2|22921|methionine sulfoxide reductase B2##NM_012228|MSRB2|22921|methionine sulfoxide reductase B2##BC018030|MSRB2|22921|methionine sulfoxide reductase B2##AF151889|MSRB2|22921|methionine sulfoxide reductase B2##BC066305|MSRB2|22921|methionine sulfoxide reductase B2##AF122004|MSRB2|22921|methionine sulfoxide reductase B2##EU446941|MSRB2|22921|methionine sulfoxide reductase B2##NM_178161|PTF1A|256297|pancreas specific transcription factor, 1a	1.946156	0.0	denovo_WM_7:34:0.637	denovo_WM_7:39:0.269	denovo_WM_7:62:0.649
chr1	235488603	235488756	reg1006838.p1	6.130	+	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	-164116	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	-196448	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	-196590	-	AB210032 NM_001206794	2122	-	BC130418 BC143719 TSC_hg19_v1_chr1_-_235491484 BC062536 BX648820	2788	-	TSC_hg19_v1_chr1_-_235491491 BC048959	2812	-	D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AB210032|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001206794|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC130418|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC143719|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC062536|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BX648820|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC048959|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)	0.95537	0.0	denovo_WM_7:9:0.760
chr6	34720431	34720579	reg1007353.p1	6.130	+	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	-55879	-	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	-55959	-	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-196409	-	NM_003093	4365	+	TSC_hg19_v1_chr6_+_34725281 AK311955 AK223098 BC121082 BC121083 X12517	4783	+	TSC_hg19_v1_chr6_+_34759793 NM_017754 BC026164	39265	+	NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##AK311955|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##AK223098|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##BC121082|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##BC121083|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##X12517|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C##NM_017754|UHRF1BP1|54887|UHRF1 binding protein 1##BC026164|UHRF1BP1|54887|UHRF1 binding protein 1	2.907636	0.0	denovo_WM_7:0:0.899	denovo_WM_7:-21:0.265	denovo_WM_7:-22:0.221	denovo_WM_7:-40:0.231	denovo_WM_7:-41:0.275
chr12	22848140	22848248	reg1006090.p2	6.129	+	TSC_hg19_v1_chr12_+_22778130 CU688188 BC006111 AL137750 AK074425	-70047	+	AF207600 TSC_hg19_v1_chr12_+_22778077 BC066907 NM_001039481 NM_018638	-70151	+	TSC_hg19_v1_chr12_-_22697446 AY166851 NM_014802 AK310753	-150728	-	NM_178010 AK098610 AK223536	889332	-	AK074317 TSC_hg19_v1_chr12_-_24102605 BC065532 AB081589 NM_006940	1254408	-	TSC_hg19_v1_chr12_-_24103855 AK299607 AK096569	1255660	-	BC006111|ETNK1|55500|ethanolamine kinase 1##AL137750|ETNK1|55500|ethanolamine kinase 1##AK074425|ETNK1|55500|ethanolamine kinase 1##AF207600|ETNK1|55500|ethanolamine kinase 1##BC066907|ETNK1|55500|ethanolamine kinase 1##NM_001039481|ETNK1|55500|ethanolamine kinase 1##NM_018638|ETNK1|55500|ethanolamine kinase 1##AY166851|KIAA0528|9847|KIAA0528##NM_014802|KIAA0528|9847|KIAA0528##AK310753|KIAA0528|9847|KIAA0528##NM_178010|SOX5|6660|SRY (sex determining region Y)-box 5##AK098610|SOX5|6660|SRY (sex determining region Y)-box 5##AK223536|SOX5|6660|SRY (sex determining region Y)-box 5##AK074317|SOX5|6660|SRY (sex determining region Y)-box 5##BC065532|SOX5|6660|SRY (sex determining region Y)-box 5##AB081589|SOX5|6660|SRY (sex determining region Y)-box 5##NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5##AK299607|SOX5|6660|SRY (sex determining region Y)-box 5##AK096569|SOX5|6660|SRY (sex determining region Y)-box 5	1.990788	0.0	denovo_WM_7:25:0.238	denovo_WM_7:26:0.238	denovo_WM_7:27:0.238	denovo_WM_7:28:0.238	denovo_WM_7:-66:0.233	denovo_WM_7:-68:0.446
chr16	68900858	68900972	reg1006623.p2	6.129	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	-23410	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-129604	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-129670	+	AK291400 NM_001199280	238551	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	239225	+	AF234839 NM_005329	240527	+	BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3##AF234839|HAS3|3038|hyaluronan synthase 3##NM_005329|HAS3|3038|hyaluronan synthase 3	1.025998	0.0	
chr16	74641215	74641395	reg1005903.p2	6.129	+	TSC_hg19_v1_chr16_-_74641016 NM_001145666 NM_001145667 NM_012201	-278	-	TSC_hg19_v1_chr16_-_74641004 AK027032 AK304156 U28811 BC060822	-301	-	TSC_hg19_v1_chr16_-_74640996 BC040133 U64791 BC031836	-350	-	TSC_hg19_v1_chr16_-_74700738 BC059371	59425	-	TSC_hg19_v1_chr16_-_74700758 AK291200	59447	-	TSC_hg19_v1_chr16_-_74700775 NM_018124	59472	-	NM_001145666|GLG1|2734|golgi glycoprotein 1##NM_001145667|GLG1|2734|golgi glycoprotein 1##NM_012201|GLG1|2734|golgi glycoprotein 1##AK027032|GLG1|2734|golgi glycoprotein 1##AK304156|GLG1|2734|golgi glycoprotein 1##U28811|GLG1|2734|golgi glycoprotein 1##BC060822|GLG1|2734|golgi glycoprotein 1##BC040133|GLG1|2734|golgi glycoprotein 1##U64791|GLG1|2734|golgi glycoprotein 1##BC031836|GLG1|2734|golgi glycoprotein 1##BC059371|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##NM_018124|RFWD3|55159|ring finger and WD repeat domain 3	0.929319	0.0	denovo_WM_7:-32:0.929
chr17	70001703	70001869	reg1000706.p3	6.128	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1836090	+	BC033038 NM_170742	-1900792	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1930356	+	TSC_hg19_v1_chr17_-_70116937 AL833139	115152	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	115373	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	115384	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.047656	0.0	
chr2	233470907	233471030	reg1000142.p2	6.128	+	AK310565 NM_001243252	-202	+	TSC_hg19_v1_chr2_+_233415410 NM_004846 BC005874 AB209519 AK022518 AK303802 BC005392 BC021690 AF038957 AF047695 BC000360 AF068117 BC021226 CU676880	-55523	+	TSC_hg19_v1_chr2_-_233415301 BC035143	-55649	-	TSC_hg19_v1_chr2_+_233497966 AK293581	27002	+	NM_025202 TSC_hg19_v1_chr2_+_233498314 AK315442 BC035476 AK023674 BC002449 AB209715 BC004128 AF218006 BC071886 AB385018	27340	+	TSC_hg19_v1_chr2_+_233562019 NM_001103146 NM_001103147 NM_001103148 NM_015575	91041	+	AK310565|EFHD1|80303|EF-hand domain family, member D1##NM_001243252|EFHD1|80303|EF-hand domain family, member D1##NM_004846|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC005874|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AB209519|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AK022518|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AK303802|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC005392|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC021690|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF038957|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF047695|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC000360|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF068117|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC021226|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC035143|TIGD1|200765|tigger transposable element derived 1##AK293581|EFHD1|80303|EF-hand domain family, member D1##NM_025202|EFHD1|80303|EF-hand domain family, member D1##AK315442|EFHD1|80303|EF-hand domain family, member D1##BC035476|EFHD1|80303|EF-hand domain family, member D1##AK023674|EFHD1|80303|EF-hand domain family, member D1##BC002449|EFHD1|80303|EF-hand domain family, member D1##AB209715|EFHD1|80303|EF-hand domain family, member D1##BC004128|EFHD1|80303|EF-hand domain family, member D1##AF218006|EFHD1|80303|EF-hand domain family, member D1##BC071886|EFHD1|80303|EF-hand domain family, member D1##NM_001103146|GIGYF2|26058|GRB10 interacting GYF protein 2##NM_001103147|GIGYF2|26058|GRB10 interacting GYF protein 2##NM_001103148|GIGYF2|26058|GRB10 interacting GYF protein 2##NM_015575|GIGYF2|26058|GRB10 interacting GYF protein 2	0.0	0.967045	CTCF.p2:31:0.967
chr22	38004196	38004376	reg1002638.p4	6.128	+	M87842 BC059782 NM_006498 CR456512	-28286	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-47813	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-88979	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	276	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	484	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	597	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	0.0	0.0	
chr12	123717284	123717435	reg1006607.p1	6.126	+	BC130440 BC144016 BC144017 AK091181 AX746832 NM_022782	-10943	-	AB040890 TSC_hg19_v1_chr12_-_123635595	-81861	-	NM_020845	-122385	-	TSC_hg19_v1_chr12_+_123717463 AK095982	113	+	TSC_hg19_v1_chr12_-_123717684 AK096541	305	-	NM_152269 TSC_hg19_v1_chr12_+_123717982 BC020885 BC062329 AF061733 AK025908 NM_001194995 BC018145	591	+	BC130440|MPHOSPH9|10198|M-phase phosphoprotein 9##BC144016|MPHOSPH9|10198|M-phase phosphoprotein 9##BC144017|MPHOSPH9|10198|M-phase phosphoprotein 9##AK091181|MPHOSPH9|10198|M-phase phosphoprotein 9##NM_022782|MPHOSPH9|10198|M-phase phosphoprotein 9##AB040890|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2##NM_020845|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2##AK095982|C12orf65|91574|chromosome 12 open reading frame 65##AK096541|MPHOSPH9|10198|M-phase phosphoprotein 9##NM_152269|C12orf65|91574|chromosome 12 open reading frame 65##BC020885|C12orf65|91574|chromosome 12 open reading frame 65##BC062329|C12orf65|91574|chromosome 12 open reading frame 65##AF061733|C12orf65|91574|chromosome 12 open reading frame 65##AK025908|C12orf65|91574|chromosome 12 open reading frame 65##NM_001194995|C12orf65|91574|chromosome 12 open reading frame 65##BC018145|C12orf65|91574|chromosome 12 open reading frame 65	0.019988	0.0	
chr2	112212150	112212299	reg1007419.p2	6.126	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-333737	+	AK300513 NM_001142807 BC022268	-722045	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-776402	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	429402	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	429537	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	443961	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.016085	0.077248	
chr4	18106826	18106960	reg1005504.p1	6.126	+	AK096181 TSC_hg19_v1_chr4_-_18023379 CU691482 BC037322 AK299939 NM_001166139 NM_153686	-83427	-	AF331796 NM_022346 TSC_hg19_v1_chr4_+_17812610 AB013299 AK022512 BC068467 AF235023 BC143383 BC101476 CU686641	-294282	+	TSC_hg19_v1_chr4_-_17812353 AK056116 NM_017741	-294620	-	AB017168 NM_004787 BC117190 BC143978 AF133270	2148443	+	TSC_hg19_v1_chr4_+_20702080 AK307786 NM_001130727 NM_145048 AK294077 AK297556 AK307355 AK315482 AK291544 AK307092	2595174	+	DQ148492 AK294188 TSC_hg19_v1_chr4_-_20985711	2878736	-	AK096181|LCORL|254251|ligand dependent nuclear receptor corepressor-like##BC037322|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AK299939|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_001166139|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_153686|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AF331796|NCAPG|64151|non-SMC condensin I complex, subunit G##NM_022346|NCAPG|64151|non-SMC condensin I complex, subunit G##AB013299|NCAPG|64151|non-SMC condensin I complex, subunit G##AK022512|NCAPG|64151|non-SMC condensin I complex, subunit G##BC068467|NCAPG|64151|non-SMC condensin I complex, subunit G##AF235023|NCAPG|64151|non-SMC condensin I complex, subunit G##BC143383|NCAPG|64151|non-SMC condensin I complex, subunit G##BC101476|NCAPG|64151|non-SMC condensin I complex, subunit G##AK056116|DCAF16|54876|DDB1 and CUL4 associated factor 16##NM_017741|DCAF16|54876|DDB1 and CUL4 associated factor 16##AB017168|SLIT2|9353|slit homolog 2 (Drosophila)##NM_004787|SLIT2|9353|slit homolog 2 (Drosophila)##BC117190|SLIT2|9353|slit homolog 2 (Drosophila)##BC143978|SLIT2|9353|slit homolog 2 (Drosophila)##AF133270|SLIT2|9353|slit homolog 2 (Drosophila)##AK307786|PACRGL|133015|PARK2 co-regulated-like##NM_001130727|PACRGL|133015|PARK2 co-regulated-like##NM_145048|PACRGL|133015|PARK2 co-regulated-like##AK294077|PACRGL|133015|PARK2 co-regulated-like##AK297556|PACRGL|133015|PARK2 co-regulated-like##AK307355|PACRGL|133015|PARK2 co-regulated-like##AK315482|PACRGL|133015|PARK2 co-regulated-like##AK291544|PACRGL|133015|PARK2 co-regulated-like##AK307092|PACRGL|133015|PARK2 co-regulated-like##DQ148492|KCNIP4|80333|Kv channel interacting protein 4##AK294188|KCNIP4|80333|Kv channel interacting protein 4	0.994998	0.0	denovo_WM_7:7:0.921
chr8	90838579	90838759	reg1007363.p2	6.126	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	-68385	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	-68639	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1498923	-	AF061326 NM_004337	75426	+	BC031054 NM_001126111 TSC_hg19_v1_chr8_+_90914816	76125	+	TSC_hg19_v1_chr8_-_90996804 AB528582 BC143065 BC143066 BC108650 BC016762 BC005293 AF058696 AF051334 AK223256 BC146797 BC136802 BC136803 BC144413	158163	-	AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC031054|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001126111|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC143065|NBN|4683|nibrin##BC143066|NBN|4683|nibrin##BC108650|NBN|4683|nibrin##BC016762|NBN|4683|nibrin##BC005293|NBN|4683|nibrin##AF058696|NBN|4683|nibrin##AF051334|NBN|4683|nibrin##AK223256|NBN|4683|nibrin##BC146797|NBN|4683|nibrin##BC136802|NBN|4683|nibrin##BC136803|NBN|4683|nibrin##BC144413|NBN|4683|nibrin	1.804511	0.0	denovo_WM_7:-4:0.628	denovo_WM_7:10:0.801
chrX	87672164	87672301	reg1006065.p1	6.126	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-899427	+	AK055953 AK298787 NM_001139515	-2154262	+	AK091842 AX747214 TSC_hg19_v1_chrX_+_85403461	-2268767	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	330008	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	1504779	+	NM_080832	3017364	+	NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##AK055953|DACH2|117154|dachshund homolog 2 (Drosophila)##AK298787|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001139515|DACH2|117154|dachshund homolog 2 (Drosophila)##AK091842|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5	0.992604	0.0	denovo_WM_7:14:0.219	denovo_WM_7:15:0.636
chr15	57011509	57011639	reg1007081.p1	6.125	+	TSC_hg19_v1_chr15_-_56757262 BC031046 AK310029 BC012554 BC034991 AK002084 NM_018365	-254288	-	TSC_hg19_v1_chr15_+_56657623 AK294960 BC028119 NM_198524 AL832050	-353945	+	TSC_hg19_v1_chr15_-_56535479 NM_022841	-476092	-	TSC_hg19_v1_chr15_-_57025690 AB046804 BC053649 BC064359 AK310882 AK289739 BC130451 BC136412	14138	-	TSC_hg19_v1_chr15_-_57025818 BX641000 BX640707 NM_001002843 NM_001002844 NM_017661 AK295159	14258	-	TSC_hg19_v1_chr15_-_57210733 AK096657 BC036541	199162	-	BC031046|MNS1|55329|meiosis-specific nuclear structural 1##BC012554|MNS1|55329|meiosis-specific nuclear structural 1##BC034991|MNS1|55329|meiosis-specific nuclear structural 1##AK002084|MNS1|55329|meiosis-specific nuclear structural 1##NM_018365|MNS1|55329|meiosis-specific nuclear structural 1##AK294960|TEX9|374618|testis expressed 9##BC028119|TEX9|374618|testis expressed 9##NM_198524|TEX9|374618|testis expressed 9##AL832050|TEX9|374618|testis expressed 9##NM_022841|RFX7|64864|regulatory factor X, 7##AB046804|ZNF280D|54816|zinc finger protein 280D##BC053649|ZNF280D|54816|zinc finger protein 280D##BC064359|ZNF280D|54816|zinc finger protein 280D##AK310882|ZNF280D|54816|zinc finger protein 280D##AK289739|ZNF280D|54816|zinc finger protein 280D##BC130451|ZNF280D|54816|zinc finger protein 280D##BC136412|ZNF280D|54816|zinc finger protein 280D##BX641000|ZNF280D|54816|zinc finger protein 280D##BX640707|ZNF280D|54816|zinc finger protein 280D##NM_001002843|ZNF280D|54816|zinc finger protein 280D##NM_001002844|ZNF280D|54816|zinc finger protein 280D##NM_017661|ZNF280D|54816|zinc finger protein 280D##AK295159|ZNF280D|54816|zinc finger protein 280D##AK096657|LOC145783|145783|uncharacterized LOC145783	1.497191	0.0	denovo_WM_7:-35:0.585
chr1	236036554	236036720	reg1006750.p1	6.124	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-6393	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-6454	-	BC022485 NM_001098721 NM_004485	-222584	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	191740	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	191788	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	191841	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	0.0	0.0	
chr4	144476000	144476164	reg1006530.p1	6.124	+	AB384709 TSC_hg19_v1_chr4_+_144435139	-40968	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	-41354	+	NM_002039 NM_207123 AK289767 BC064848	-218067	+	TSC_hg19_v1_chr4_+_144480613 AX721285 AX721289 BC025996	4534	+	NM_001168235	145745	-	EU176664 BC064396 BC017864 M29610 NM_002102 NM_198682	350605	-	NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##BC025996|GUSBP5|441046|glucuronidase, beta pseudogene 5##NM_001168235|FREM3|166752|FRAS1 related extracellular matrix 3##EU176664|GYPE|2996|glycophorin E (MNS blood group)##BC064396|GYPE|2996|glycophorin E (MNS blood group)##BC017864|GYPE|2996|glycophorin E (MNS blood group)##M29610|GYPE|2996|glycophorin E (MNS blood group)##NM_002102|GYPE|2996|glycophorin E (MNS blood group)##NM_198682|GYPE|2996|glycophorin E (MNS blood group)	0.0	0.0	
chr9	114840950	114841094	reg1008001.p1	6.124	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-181555	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-181908	+	AL833535 NM_173521	-295247	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	96498	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	254265	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	254827	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	1.071479	0.0	denovo_WM_7:81:0.219
chr11	62495139	62495245	reg1000283.p1	6.122	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-257	-	TSC_hg19_v1_chr11_-_62494900 DQ470474 AK122942 NM_001079559	-345	-	TSC_hg19_v1_chr11_-_62476984 BC009866 AK315423	-18199	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	835	+	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	26402	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	33836	+	BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##DQ470474|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##AK122942|HNRNPUL2-BSCL2|100534595|HNRNPUL2-BSCL2 readthrough##NM_001079559|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##BC009866|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##AK315423|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G	0.0	0.0	
chr12	31961876	31962003	reg1004483.p1	6.122	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	-16735	-	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-79883	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-79965	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	150392	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	150455	+	TSC_hg19_v1_chr12_+_32259750 BC010091	297775	+	BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)	0.998096	0.0	
chr15	35277335	35277511	reg1005286.p1	6.122	+	AB384497 AK291615 BC127111 BC127112 TSC_hg19_v1_chr15_-_35261899 AB011132 AK315815 BX647820 EF553519 NM_014691	-15496	-	AK129892 AK056592 AK129902 AK290616 TSC_hg19_v1_chr15_-_35087751 BC009978 NM_005159	-189586	-	BC069131 BC069339 NM_020660 BC112110 BC112114 BC143788	-230689	-	TSC_hg19_v1_chr15_-_35280489 BC071603 AK291438	3031	-	NM_014106 TSC_hg19_v1_chr15_-_35280498	3089	-	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	560963	-	AK291615|AQR|9716|aquarius homolog (mouse)##BC127111|AQR|9716|aquarius homolog (mouse)##BC127112|AQR|9716|aquarius homolog (mouse)##AB011132|AQR|9716|aquarius homolog (mouse)##AK315815|AQR|9716|aquarius homolog (mouse)##BX647820|AQR|9716|aquarius homolog (mouse)##EF553519|AQR|9716|aquarius homolog (mouse)##NM_014691|AQR|9716|aquarius homolog (mouse)##AK129892|ACTC1|70|actin, alpha, cardiac muscle 1##AK056592|ACTC1|70|actin, alpha, cardiac muscle 1##AK129902|ACTC1|70|actin, alpha, cardiac muscle 1##AK290616|ACTC1|70|actin, alpha, cardiac muscle 1##BC009978|ACTC1|70|actin, alpha, cardiac muscle 1##NM_005159|ACTC1|70|actin, alpha, cardiac muscle 1##BC069131|GJD2|57369|gap junction protein, delta 2, 36kDa##BC069339|GJD2|57369|gap junction protein, delta 2, 36kDa##NM_020660|GJD2|57369|gap junction protein, delta 2, 36kDa##BC112110|GJD2|57369|gap junction protein, delta 2, 36kDa##BC112114|GJD2|57369|gap junction protein, delta 2, 36kDa##BC143788|GJD2|57369|gap junction protein, delta 2, 36kDa##BC071603|ZNF770|54989|zinc finger protein 770##AK291438|ZNF770|54989|zinc finger protein 770##NM_014106|ZNF770|54989|zinc finger protein 770##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4	1.468943	0.0	denovo_WM_7:59:0.310
chrX	111112294	111112416	reg1007475.p1	6.122	+	NM_001039210 NM_001099922 NM_001168385 NM_018466 TSC_hg19_v1_chrX_+_110924425 AK300394 AK302729 AK311608 AK312229 BC005336 AF220051 AK316306 AK316522 AK304712 AK302890	-187936	+	AF040254 AF040255 TSC_hg19_v1_chrX_-_110655421 BC027925 AK290455 AK299822 NM_178151 NM_001195553 NM_178152 NM_178153	-456934	-	AJ003112 NM_000555	-457982	-	NM_001195576 NM_001195578	6997	+	BC034811 NM_001195577	12769	+	AF054568 NM_012471	213648	-	NM_001039210|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##NM_001099922|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##NM_001168385|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##NM_018466|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK300394|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK302729|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK311608|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK312229|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##BC005336|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AF220051|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK316306|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK316522|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK304712|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AK302890|ALG13|79868|asparagine-linked glycosylation 13 homolog (S. cerevisiae)##AF040254|DCX|1641|doublecortin##AF040255|DCX|1641|doublecortin##BC027925|DCX|1641|doublecortin##AK290455|DCX|1641|doublecortin##AK299822|DCX|1641|doublecortin##NM_178151|DCX|1641|doublecortin##NM_001195553|DCX|1641|doublecortin##NM_178152|DCX|1641|doublecortin##NM_178153|DCX|1641|doublecortin##AJ003112|DCX|1641|doublecortin##NM_000555|DCX|1641|doublecortin##NM_001195576|LOC100329135|100329135|uncharacterized LOC100329135##NM_001195578|LOC100329135|100329135|uncharacterized LOC100329135##BC034811|LOC100329135|100329135|uncharacterized LOC100329135##NM_001195577|LOC100329135|100329135|uncharacterized LOC100329135##AF054568|TRPC5|7224|transient receptor potential cation channel, subfamily C, member 5##NM_012471|TRPC5|7224|transient receptor potential cation channel, subfamily C, member 5	0.997367	0.0	denovo_WM_7:31:0.493	denovo_WM_7:32:0.493
chr8	38220288	38220468	reg1006190.p1	6.121	+	TSC_hg19_v1_chr8_-_38205660 AB384816 CU680186 BC073858	-14686	-	BC033025 AK292118 TSC_hg19_v1_chr8_-_38126733 AF212238 BC106014 NM_001102559 NM_001102560 NM_032483	-93662	-	TSC_hg19_v1_chr8_+_38089233 AK125904 NM_001164232	-131061	+	TSC_hg19_v1_chr8_-_38239339 BC101717 BC113469 BC143510 BC115006 BC115007	18975	-	AK022560 TSC_hg19_v1_chr8_-_38239782 AJ295990 AJ295991 AJ295992 BC062631 BC012059 AF255649 BC007787	19248	-	TSC_hg19_v1_chr8_-_38239790 AF332468 AF332469 NM_017778 NM_023034 BC000030	19418	-	BC073858|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC033025|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AK292118|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AF212238|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##BC106014|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_001102559|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_001102560|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_032483|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AK125904|DDHD2|23259|DDHD domain containing 2##NM_001164232|DDHD2|23259|DDHD domain containing 2##BC101717|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC113469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC143510|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115006|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115007|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AK022560|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295990|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295991|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295992|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC062631|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC012059|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF255649|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC007787|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF332468|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF332469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_017778|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_023034|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC000030|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1	0.0	0.0	
chr11	30364457	30364637	reg1003495.p1	6.120	+	TSC_hg19_v1_chr11_+_30344653 AK096287 NM_152316 BX647617 BC047775	-19895	+	NM_000510 NM_001018080	-111985	+	M55514 TSC_hg19_v1_chr11_-_30038533 AK311228 NM_002233	-326016	-	CU689190 NM_001584 U57911	237432	-	TSC_hg19_v1_chr11_-_30605748 AK309809	241201	-	TSC_hg19_v1_chr11_-_30607762 AB209163 AK314833 NM_001145399	243298	-	AK096287|C11orf46|120534|chromosome 11 open reading frame 46##NM_152316|C11orf46|120534|chromosome 11 open reading frame 46##BX647617|C11orf46|120534|chromosome 11 open reading frame 46##BC047775|C11orf46|120534|chromosome 11 open reading frame 46##NM_000510|FSHB|2488|follicle stimulating hormone, beta polypeptide##NM_001018080|FSHB|2488|follicle stimulating hormone, beta polypeptide##M55514|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##AK311228|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_002233|KCNA4|3739|potassium voltage-gated channel, shaker-related subfamily, member 4##NM_001584|MPPED2|744|metallophosphoesterase domain containing 2##U57911|MPPED2|744|metallophosphoesterase domain containing 2##AK309809|MPPED2|744|metallophosphoesterase domain containing 2##AB209163|MPPED2|744|metallophosphoesterase domain containing 2##AK314833|MPPED2|744|metallophosphoesterase domain containing 2##NM_001145399|MPPED2|744|metallophosphoesterase domain containing 2	0.0	0.0	
chr1	151371899	151372079	reg1006052.p2	6.120	+	AK310044 BC009084 NM_003944 TSC_hg19_v1_chr1_-_151345182 AK303815 AK296661 AK309264 AK315643 AK023875 AK298355 BC032997	-26820	-	TSC_hg19_v1_chr1_-_151319726 AK312289 AK302891 NM_000449 NM_001025603 AK311525	-52246	-	TSC_hg19_v1_chr1_-_151319685 X85786 BC017471	-52301	-	TSC_hg19_v1_chr1_+_151372038 AK313825 AK294149 D26600 NM_002796 BC008314 BC010088 BC010098 BC011768 BC012168 BC017451 BC017486 BC000331 AB464086 BT006917 CR456820 CU675936 CU678915 CU679615 CU680252 DQ890748 DQ892020 DQ895212 S71381	51	+	TSC_hg19_v1_chr1_-_151414644 AB007930 AB463182 NM_207171 CU691222	42672	-	TSC_hg19_v1_chr1_-_151431656 BX649163 AB037911 AB075477 AK000199 AK300307 BC057773 BX537561 AK299791 AK302501	59687	-	AK310044|SELENBP1|8991|selenium binding protein 1##BC009084|SELENBP1|8991|selenium binding protein 1##NM_003944|SELENBP1|8991|selenium binding protein 1##AK303815|SELENBP1|8991|selenium binding protein 1##AK296661|SELENBP1|8991|selenium binding protein 1##AK309264|SELENBP1|8991|selenium binding protein 1##AK315643|SELENBP1|8991|selenium binding protein 1##AK023875|SELENBP1|8991|selenium binding protein 1##AK298355|SELENBP1|8991|selenium binding protein 1##BC032997|SELENBP1|8991|selenium binding protein 1##AK312289|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK302891|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_000449|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_001025603|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK311525|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##X85786|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##BC017471|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK313825|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK294149|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##D26600|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##NM_002796|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC008314|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010088|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010098|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC011768|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC012168|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017451|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017486|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC000331|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BT006917|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##CR456820|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ890748|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ892020|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ895212|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##S71381|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AB007930|POGZ|23126|pogo transposable element with ZNF domain##NM_207171|POGZ|23126|pogo transposable element with ZNF domain##BX649163|POGZ|23126|pogo transposable element with ZNF domain##AB037911|POGZ|23126|pogo transposable element with ZNF domain##AB075477|POGZ|23126|pogo transposable element with ZNF domain##AK000199|POGZ|23126|pogo transposable element with ZNF domain##AK300307|POGZ|23126|pogo transposable element with ZNF domain##BC057773|POGZ|23126|pogo transposable element with ZNF domain##BX537561|POGZ|23126|pogo transposable element with ZNF domain##AK299791|POGZ|23126|pogo transposable element with ZNF domain##AK302501|POGZ|23126|pogo transposable element with ZNF domain	0.01174	0.0	
chr3	190003939	190004075	reg1007531.p2	6.120	+	NM_001134418	-163782	-	NM_018192	-165100	-	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	-165312	-	BC012471 AF114837 AY358652 AF101051 AF134160 AK312866 AK225963 AK296934 TSC_hg19_v1_chr3_-_190040231 NM_021101	36207	-	AK314955 NM_006580	101653	+	CU687168 BC071780 AY358607 NM_207316	163623	-	NM_001134418|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##BC012471|CLDN1|9076|claudin 1##AF114837|CLDN1|9076|claudin 1##AY358652|CLDN1|9076|claudin 1##AF101051|CLDN1|9076|claudin 1##AF134160|CLDN1|9076|claudin 1##AK312866|CLDN1|9076|claudin 1##AK296934|CLDN1|9076|claudin 1##NM_021101|CLDN1|9076|claudin 1##AK314955|CLDN16|10686|claudin 16##NM_006580|CLDN16|10686|claudin 16##BC071780|TMEM207|131920|transmembrane protein 207##AY358607|TMEM207|131920|transmembrane protein 207##NM_207316|TMEM207|131920|transmembrane protein 207	1.604384	0.0	denovo_WM_7:-10:0.287	denovo_WM_7:88:0.223	denovo_WM_7:-93:0.644	denovo_WM_7:-95:0.213
chr1	214783712	214783860	reg1007472.p1	6.119	+	TSC_hg19_v1_chr1_+_214776585 U30872	-7168	+	TSC_hg19_v1_chr1_+_214776547 NM_016343 U19769 AK307690	-7265	+	TSC_hg19_v1_chr1_-_214724977 NM_005401	-58788	-	NM_001017424	395098	+	NM_001017425 NM_014217 AK294780 AK291483 BC143586 BC101693 BC101695 AF004711 EF165334 AF171068 BC069462 EF165335	472824	+	TSC_hg19_v1_chr1_+_215740717 BC013868 NM_016121 BC094879 BC117188 BC126173 BC143963 HQ258497	957077	+	U30872|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##NM_016343|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##U19769|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##AK307690|CENPF|1063|centromere protein F, 350/400kDa (mitosin)##NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_001017424|KCNK2|3776|potassium channel, subfamily K, member 2##NM_001017425|KCNK2|3776|potassium channel, subfamily K, member 2##NM_014217|KCNK2|3776|potassium channel, subfamily K, member 2##AK294780|KCNK2|3776|potassium channel, subfamily K, member 2##AK291483|KCNK2|3776|potassium channel, subfamily K, member 2##BC143586|KCNK2|3776|potassium channel, subfamily K, member 2##BC101693|KCNK2|3776|potassium channel, subfamily K, member 2##BC101695|KCNK2|3776|potassium channel, subfamily K, member 2##AF004711|KCNK2|3776|potassium channel, subfamily K, member 2##EF165334|KCNK2|3776|potassium channel, subfamily K, member 2##AF171068|KCNK2|3776|potassium channel, subfamily K, member 2##BC069462|KCNK2|3776|potassium channel, subfamily K, member 2##EF165335|KCNK2|3776|potassium channel, subfamily K, member 2##BC013868|KCTD3|51133|potassium channel tetramerisation domain containing 3##NM_016121|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC094879|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC117188|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC126173|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC143963|KCTD3|51133|potassium channel tetramerisation domain containing 3##HQ258497|KCTD3|51133|potassium channel tetramerisation domain containing 3	0.998941	0.0	denovo_WM_7:44:0.457	denovo_WM_7:45:0.457
chr6	35996529	35996709	reg1006966.p1	6.119	+	TSC_hg19_v1_chr6_+_35995587 BC000092 BC031574 L35264	-963	+	AK303414 TSC_hg19_v1_chr6_+_35995584	-1036	+	TSC_hg19_v1_chr6_+_35995536 AK291709 L35263	-1074	+	NM_002754 TSC_hg19_v1_chr6_+_36098292 AK308018 BC085196 AF004709 BC000433 BC001641 BC004428 Y10488 AF092535 U93232 AF100546 AB451221 AB451344 AB463892 BT007221 CR536490 CR541687 DQ891372 DQ894551 EU832156 EU832250 AK222922	101695	+	TSC_hg19_v1_chr6_+_36164569 AB033112 NM_015695	167941	+	TSC_hg19_v1_chr6_-_36164979 BC042825	168365	-	BC000092|MAPK14|1432|mitogen-activated protein kinase 14##BC031574|MAPK14|1432|mitogen-activated protein kinase 14##L35264|MAPK14|1432|mitogen-activated protein kinase 14##AK303414|MAPK14|1432|mitogen-activated protein kinase 14##AK291709|MAPK14|1432|mitogen-activated protein kinase 14##L35263|MAPK14|1432|mitogen-activated protein kinase 14##NM_002754|MAPK13|5603|mitogen-activated protein kinase 13##AK308018|MAPK13|5603|mitogen-activated protein kinase 13##BC085196|MAPK13|5603|mitogen-activated protein kinase 13##AF004709|MAPK13|5603|mitogen-activated protein kinase 13##BC000433|MAPK13|5603|mitogen-activated protein kinase 13##BC001641|MAPK13|5603|mitogen-activated protein kinase 13##BC004428|MAPK13|5603|mitogen-activated protein kinase 13##Y10488|MAPK13|5603|mitogen-activated protein kinase 13##AF092535|MAPK13|5603|mitogen-activated protein kinase 13##U93232|MAPK13|5603|mitogen-activated protein kinase 13##AF100546|MAPK13|5603|mitogen-activated protein kinase 13##AB451221|MAPK13|5603|mitogen-activated protein kinase 13##AB451344|MAPK13|5603|mitogen-activated protein kinase 13##BT007221|MAPK13|5603|mitogen-activated protein kinase 13##CR536490|MAPK13|5603|mitogen-activated protein kinase 13##CR541687|MAPK13|5603|mitogen-activated protein kinase 13##DQ891372|MAPK13|5603|mitogen-activated protein kinase 13##DQ894551|MAPK13|5603|mitogen-activated protein kinase 13##EU832156|MAPK13|5603|mitogen-activated protein kinase 13##EU832250|MAPK13|5603|mitogen-activated protein kinase 13##AK222922|MAPK13|5603|mitogen-activated protein kinase 13##AB033112|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_015695|BRPF3|27154|bromodomain and PHD finger containing, 3	0.988737	0.0	
chrX	46653765	46653877	reg1007158.p1	6.119	+	TSC_hg19_v1_chrX_-_46618608 BC094742	-35191	-	AF298591 NM_032591 TSC_hg19_v1_chrX_-_46618577	-35292	-	NM_019886 BC045537 BC023971 AB040711 AB037187 GQ129386 GQ129387	-220543	+	NM_006915 AJ007590 TSC_hg19_v1_chrX_+_46696391 BC027851	42556	+	BC043348 BC053530 TSC_hg19_v1_chrX_+_46696426	42605	+	TSC_hg19_v1_chrX_+_46696479 AK312555 CU692158	42683	+	BC094742|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##AF298591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_032591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_019886|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC045537|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC023971|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB040711|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB037187|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129386|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129387|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##NM_006915|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AJ007590|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC027851|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC043348|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC053530|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AK312555|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)	1.987721	0.0	denovo_WM_7:3:0.981	denovo_WM_7:-42:0.692
chr18	32090483	32090599	reg1000946.p3	6.118	+	AJ009668 TSC_hg19_v1_chr18_+_32073374	-17178	+	TSC_hg19_v1_chr18_+_32073264 NM_001198945 NM_001392 NM_032975 NM_032979 AK294746 U26742	-17277	+	AB017800 NM_001198546 NM_001198548 NM_003787	-287027	-	NM_001128175 NM_001198938 NM_001198939 NM_001198940 AK308410 AL833285 BC005300 AB209102	82763	+	NM_001198941 NM_032978 TSC_hg19_v1_chr18_+_32290229 AK291156	199705	+	NM_001390 NM_001391 AB463020 BT006937 EU831587 EU831619 EU831672 EU831705	245398	+	AJ009668|DTNA|1837|dystrobrevin, alpha##NM_001198945|DTNA|1837|dystrobrevin, alpha##NM_001392|DTNA|1837|dystrobrevin, alpha##NM_032975|DTNA|1837|dystrobrevin, alpha##NM_032979|DTNA|1837|dystrobrevin, alpha##AK294746|DTNA|1837|dystrobrevin, alpha##U26742|DTNA|1837|dystrobrevin, alpha##AB017800|NOL4|8715|nucleolar protein 4##NM_001198546|NOL4|8715|nucleolar protein 4##NM_001198548|NOL4|8715|nucleolar protein 4##NM_003787|NOL4|8715|nucleolar protein 4##NM_001128175|DTNA|1837|dystrobrevin, alpha##NM_001198938|DTNA|1837|dystrobrevin, alpha##NM_001198939|DTNA|1837|dystrobrevin, alpha##NM_001198940|DTNA|1837|dystrobrevin, alpha##AK308410|DTNA|1837|dystrobrevin, alpha##AL833285|DTNA|1837|dystrobrevin, alpha##BC005300|DTNA|1837|dystrobrevin, alpha##AB209102|DTNA|1837|dystrobrevin, alpha##NM_001198941|DTNA|1837|dystrobrevin, alpha##NM_032978|DTNA|1837|dystrobrevin, alpha##AK291156|DTNA|1837|dystrobrevin, alpha##NM_001390|DTNA|1837|dystrobrevin, alpha##NM_001391|DTNA|1837|dystrobrevin, alpha##BT006937|DTNA|1837|dystrobrevin, alpha##EU831587|DTNA|1837|dystrobrevin, alpha##EU831619|DTNA|1837|dystrobrevin, alpha##EU831672|DTNA|1837|dystrobrevin, alpha##EU831705|DTNA|1837|dystrobrevin, alpha	0.995068	0.0	
chr1	206133017	206133194	reg1007488.p1	6.117	+	BC151208 BC136538 BC144233 AF331525 NM_052934 NM_134325	-220539	-	BC039170 BC063477 AK057131 AK290786 TSC_hg19_v1_chr1_-_205819261 NM_152491	-313846	-	TSC_hg19_v1_chr1_+_205782474 AK097788	-350604	+	TSC_hg19_v1_chr1_-_206137445 AK124556	4343	-	BC035696 NM_001123168 BC137545 BC137546	5811	+	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	91256	+	BC151208|SLC26A9|115019|solute carrier family 26, member 9##BC136538|SLC26A9|115019|solute carrier family 26, member 9##BC144233|SLC26A9|115019|solute carrier family 26, member 9##AF331525|SLC26A9|115019|solute carrier family 26, member 9##NM_052934|SLC26A9|115019|solute carrier family 26, member 9##NM_134325|SLC26A9|115019|solute carrier family 26, member 9##BC039170|PM20D1|148811|peptidase M20 domain containing 1##BC063477|PM20D1|148811|peptidase M20 domain containing 1##AK057131|PM20D1|148811|peptidase M20 domain containing 1##AK290786|PM20D1|148811|peptidase M20 domain containing 1##NM_152491|PM20D1|148811|peptidase M20 domain containing 1##AK124556|LOC100132966|100132966|uncharacterized LOC100132966##BC035696|FAM72A|729533|family with sequence similarity 72, member A##NM_001123168|FAM72A|729533|family with sequence similarity 72, member A##BC137545|FAM72A|729533|family with sequence similarity 72, member A##BC137546|FAM72B|653820|family with sequence similarity 72, member B##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B	0.989257	0.0	denovo_WM_7:-11:0.962
chr14	106144210	106144390	reg1000134.p2	6.117	+	TSC_hg19_v1_chr14_-_106111114 AJ294731	-33184	-	BC040042 TSC_hg19_v1_chr14_-_106110945	-33377	-	TSC_hg19_v1_chr14_-_106092257 AJ294733 L13487	-51964	-	TSC_hg19_v1_chr14_-_106174914 BC113815 AJ294729	30653	-	TSC_hg19_v1_chr14_-_106208542 AF487336	64249	-	AF150959 TSC_hg19_v1_chr14_-_106208714 S76144	64410	-	AJ294731|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##BC040042|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##AJ294733|IGHG4|3503|immunoglobulin heavy constant gamma 4 (G4m marker)##AJ294729|IGHA1|3493|immunoglobulin heavy constant alpha 1	0.0	0.0	
chr22	32188515	32188622	reg1002909.p1	6.117	+	NM_001136029 AB014545 BC146766 AJ698950 AJ698951 AJ704764 AB383936 CU691240	-37691	+	TSC_hg19_v1_chr22_+_32150004 NM_001007188 NM_001242896 NM_014662 AK300737 BC057797 BC136612 BC144291	-38520	+	TSC_hg19_v1_chr22_+_32149962 AK294987	-38605	+	TSC_hg19_v1_chr22_+_32340520 NM_003405 X78138 BC003047 S80794	151920	+	TSC_hg19_v1_chr22_+_32340608 AK312650 CR456612 AB385077 L20422 CU013208 CU013496	152087	+	AJ704765 AJ704766 AL050256 NM_015372 AK315264	152753	-	NM_001136029|DEPDC5|9681|DEP domain containing 5##AB014545|DEPDC5|9681|DEP domain containing 5##BC146766|DEPDC5|9681|DEP domain containing 5##AJ698950|DEPDC5|9681|DEP domain containing 5##AJ698951|DEPDC5|9681|DEP domain containing 5##AJ704764|DEPDC5|9681|DEP domain containing 5##NM_001007188|DEPDC5|9681|DEP domain containing 5##NM_001242896|DEPDC5|9681|DEP domain containing 5##NM_014662|DEPDC5|9681|DEP domain containing 5##AK300737|DEPDC5|9681|DEP domain containing 5##BC057797|DEPDC5|9681|DEP domain containing 5##BC136612|DEPDC5|9681|DEP domain containing 5##BC144291|DEPDC5|9681|DEP domain containing 5##AK294987|DEPDC5|9681|DEP domain containing 5##NM_003405|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##X78138|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##BC003047|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##S80794|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AK312650|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CR456612|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##L20422|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013208|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013496|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AJ704765|C22orf24|25775|chromosome 22 open reading frame 24##AJ704766|C22orf24|25775|chromosome 22 open reading frame 24##AL050256|C22orf24|25775|chromosome 22 open reading frame 24##NM_015372|C22orf24|25775|chromosome 22 open reading frame 24##AK315264|C22orf24|25775|chromosome 22 open reading frame 24	1.853156	0.0	denovo_WM_7:31:0.264	denovo_WM_7:32:0.242	denovo_WM_7:33:0.215	denovo_WM_7:48:0.606
chr7	5246930	5247047	reg1007071.p1	6.117	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-17003	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-17073	+	TSC_hg19_v1_chr7_+_5229890 AK315468 BC004116 BC021200	-17091	+	BC016912 AF151808 NM_001033520 AY691426	6904	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	75618	+	TSC_hg19_v1_chr7_-_5460842 BC140723	213918	-	AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AK315468|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC004116|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021200|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4	0.0	0.0	
chr12	110752146	110752277	reg1007922.p1	6.116	+	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-32843	+	TSC_hg19_v1_chr12_+_110719041 NM_001681 NM_170665	-33176	+	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	-189990	+	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	89228	-	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	89300	-	TSC_hg19_v1_chr12_-_110888079 AF006086	135874	-	M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001681|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_170665|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	0.989248	0.0	denovo_WM_7:-62:0.721
chr17	71206587	71206732	reg1005988.p1	6.116	+	TSC_hg19_v1_chr17_+_71189203 DQ896029 AB462989 BC021985 AB037802	-17442	+	TSC_hg19_v1_chr17_+_71189196 AK098224	-17468	+	TSC_hg19_v1_chr17_+_71189175 NM_018714	-17499	+	BC011054 U92989 BC025238 TSC_hg19_v1_chr17_-_71228403	21674	-	TSC_hg19_v1_chr17_-_71228422 AK027681 AK074755 BX537858	21766	-	TSC_hg19_v1_chr17_-_71228458 BX648968	21799	-	DQ896029|COG1|9382|component of oligomeric golgi complex 1##BC021985|COG1|9382|component of oligomeric golgi complex 1##AB037802|COG1|9382|component of oligomeric golgi complex 1##AK098224|COG1|9382|component of oligomeric golgi complex 1##NM_018714|COG1|9382|component of oligomeric golgi complex 1##BC011054|FAM104A|84923|family with sequence similarity 104, member A##U92989|FAM104A|84923|family with sequence similarity 104, member A##BC025238|FAM104A|84923|family with sequence similarity 104, member A##AK027681|FAM104A|84923|family with sequence similarity 104, member A##AK074755|FAM104A|84923|family with sequence similarity 104, member A##BX537858|FAM104A|84923|family with sequence similarity 104, member A##BX648968|FAM104A|84923|family with sequence similarity 104, member A	0.999734	0.0	denovo_WM_7:-14:0.230	denovo_WM_7:-15:0.230	denovo_WM_7:-16:0.230	denovo_WM_7:-17:0.230
chr12	52517904	52517993	reg1005493.p2	6.115	+	TSC_hg19_v1_chr12_+_52463790 BC064533 BC005151 AF218031 BC009937	-54150	+	TSC_hg19_v1_chr12_+_52463754 NM_001098673 NM_021934 AK021835	-54194	+	NM_002135 NM_173157 TSC_hg19_v1_chr12_+_52445225 AK075491 AK075054 AK314437 BC016147 L13740 D49728	-72732	+	CU688016 AJ717743 BC033114 BC065180 NM_001081492 NM_182507 TSC_hg19_v1_chr12_-_52585799	67796	-	BC117348 BC126393 BC038743 NM_001242696	86615	-	NM_005556 TSC_hg19_v1_chr12_+_52626966	109014	+	BC005151|C12orf44|60673|chromosome 12 open reading frame 44##AF218031|C12orf44|60673|chromosome 12 open reading frame 44##BC009937|C12orf44|60673|chromosome 12 open reading frame 44##NM_001098673|C12orf44|60673|chromosome 12 open reading frame 44##NM_021934|C12orf44|60673|chromosome 12 open reading frame 44##AK021835|C12orf44|60673|chromosome 12 open reading frame 44##NM_002135|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_173157|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075491|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075054|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK314437|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC016147|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##L13740|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##D49728|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AJ717743|KRT80|144501|keratin 80##BC033114|KRT80|144501|keratin 80##BC065180|KRT80|144501|keratin 80##NM_001081492|KRT80|144501|keratin 80##NM_182507|KRT80|144501|keratin 80##BC117348|LOC283403|283403|uncharacterized LOC283403##BC126393|LOC283403|283403|uncharacterized LOC283403##BC038743|LOC283403|283403|uncharacterized LOC283403##NM_001242696|LOC283403|283403|uncharacterized LOC283403##NM_005556|KRT7|3855|keratin 7	0.99642	0.0	
chr21	36421588	36421768	reg1002815.p2	6.115	+	AK310646 TSC_hg19_v1_chr21_-_36421641 D43969	-43	-	TSC_hg19_v1_chr21_-_36421598 NM_001754	-75	-	TSC_hg19_v1_chr21_-_36421585 AK310587 D89788 D89789 D89790	-97	-	AK095215 BC002898 TSC_hg19_v1_chr21_-_37432613 AB004853 NM_001007259 AF391112 AK001660	1010942	-	BC036556 TSC_hg19_v1_chr21_-_37432809 AK300009 NM_017438	1011138	-	AB124848 TSC_hg19_v1_chr21_+_37442272 NM_001757	1020575	+	D43969|RUNX1|861|runt-related transcription factor 1##NM_001754|RUNX1|861|runt-related transcription factor 1##AK310587|RUNX1|861|runt-related transcription factor 1##D89788|RUNX1|861|runt-related transcription factor 1##D89789|RUNX1|861|runt-related transcription factor 1##D89790|RUNX1|861|runt-related transcription factor 1##AK095215|SETD4|54093|SET domain containing 4##BC002898|SETD4|54093|SET domain containing 4##AB004853|SETD4|54093|SET domain containing 4##NM_001007259|SETD4|54093|SET domain containing 4##AF391112|SETD4|54093|SET domain containing 4##AK001660|SETD4|54093|SET domain containing 4##BC036556|SETD4|54093|SET domain containing 4##AK300009|SETD4|54093|SET domain containing 4##NM_017438|SETD4|54093|SET domain containing 4##AB124848|CBR1|873|carbonyl reductase 1##NM_001757|CBR1|873|carbonyl reductase 1	0.992371	0.0	denovo_WM_7:23:0.856
chr7	83097791	83097955	reg1006817.p1	6.114	+	TSC_hg19_v1_chr7_-_82792195 NM_014510 NM_033026 AK297315	-305637	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	-306004	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	-1024793	-	AK303925 NM_001178129	172873	-	NM_012431	180605	-	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	726449	-	NM_014510|PCLO|27445|piccolo (presynaptic cytomatrix protein)##NM_033026|PCLO|27445|piccolo (presynaptic cytomatrix protein)##AK297315|PCLO|27445|piccolo (presynaptic cytomatrix protein)##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##AK303925|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_001178129|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_012431|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	0.99444	0.0	denovo_WM_7:1:0.734
chr7	95129028	95129196	reg1001600.p1	6.113	+	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	-13819	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-64751	-	L48516 AF320003 AF329433 CU687094 TSC_hg19_v1_chr7_-_95025687 AK301772 BC070374 AK304282 NM_000940	-103456	-	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	96751	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	272796	+	CU675453 DQ892851 DQ896098 Y17571 AK294629 TSC_hg19_v1_chr7_-_95951381 BC006566 AJ496569 AK000766 AK222864 AF118838 NM_001160210 NM_014251	822290	-	BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##L48516|PON3|5446|paraoxonase 3##AF320003|PON3|5446|paraoxonase 3##AF329433|PON3|5446|paraoxonase 3##BC070374|PON3|5446|paraoxonase 3##AK304282|PON3|5446|paraoxonase 3##NM_000940|PON3|5446|paraoxonase 3##BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##DQ892851|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##DQ896098|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##Y17571|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK294629|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC006566|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AJ496569|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK000766|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK222864|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AF118838|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_001160210|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_014251|SLC25A13|10165|solute carrier family 25, member 13 (citrin)	1.153791	0.0	
chr1	193081386	193081525	reg1007969.p2	6.112	+	NM_001243399 AF290514 NM_016066	-6241	-	AF151891 BC028113 TSC_hg19_v1_chr1_-_193074545 AF132495 BC009669 AY038988 NM_197962	-6905	-	BC036658 AY205314 AY205315 M25077 TSC_hg19_v1_chr1_+_193029273	-52231	+	TSC_hg19_v1_chr1_+_193091115 NM_024529	9633	+	TSC_hg19_v1_chr1_+_193091187 AK226038	9724	+	TSC_hg19_v1_chr1_+_193091197 AK026969	9742	+	NM_001243399|GLRX2|51022|glutaredoxin 2##AF290514|GLRX2|51022|glutaredoxin 2##NM_016066|GLRX2|51022|glutaredoxin 2##AF151891|GLRX2|51022|glutaredoxin 2##BC028113|GLRX2|51022|glutaredoxin 2##AF132495|GLRX2|51022|glutaredoxin 2##BC009669|GLRX2|51022|glutaredoxin 2##AY038988|GLRX2|51022|glutaredoxin 2##NM_197962|GLRX2|51022|glutaredoxin 2##BC036658|TROVE2|6738|TROVE domain family, member 2##AY205314|TROVE2|6738|TROVE domain family, member 2##AY205315|TROVE2|6738|TROVE domain family, member 2##M25077|TROVE2|6738|TROVE domain family, member 2##NM_024529|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK226038|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK026969|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.998855	0.0	denovo_WM_7:46:0.314	denovo_WM_7:47:0.314	denovo_WM_7:48:0.314
chr15	101667600	101667780	reg1001217.p1	6.112	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-208178	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-208216	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-247619	+	AB071402 TSC_hg19_v1_chr15_-_101791795	124046	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	124445	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	149973	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.0	0.0	
chr17	46469083	46469239	reg1008415.p1	6.112	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-284009	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-284176	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-290340	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	38377	-	TSC_hg19_v1_chr17_-_46507604 BC039040	38456	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	139110	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	1.111423	0.0	
chr7	134321894	134322046	reg1006010.p1	6.111	+	NM_001080538	-88122	+	AF524864 NM_020299 BC008837	-109600	+	TSC_hg19_v1_chr7_-_134143878 AK313439 BC000260 NM_001628 AK311339	-178006	-	NM_001724 NM_199186 TSC_hg19_v1_chr7_+_134331586 BC017050 AK315439 AK097778 X04327	9615	+	TSC_hg19_v1_chr7_+_134464170 NM_004342 NM_033138 NM_033157 AK289686	142196	+	TSC_hg19_v1_chr7_+_134464387 AK298524 AK304729 AF247820 M83216	142419	+	NM_001080538|AKR1B15|441282|aldo-keto reductase family 1, member B15##AF524864|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##NM_020299|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##BC008837|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##AK313439|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##BC000260|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##NM_001628|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##AK311339|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##NM_001724|BPGM|669|2,3-bisphosphoglycerate mutase##NM_199186|BPGM|669|2,3-bisphosphoglycerate mutase##BC017050|BPGM|669|2,3-bisphosphoglycerate mutase##AK315439|BPGM|669|2,3-bisphosphoglycerate mutase##AK097778|BPGM|669|2,3-bisphosphoglycerate mutase##X04327|BPGM|669|2,3-bisphosphoglycerate mutase##NM_004342|CALD1|800|caldesmon 1##NM_033138|CALD1|800|caldesmon 1##NM_033157|CALD1|800|caldesmon 1##AK289686|CALD1|800|caldesmon 1##AK298524|CALD1|800|caldesmon 1##AK304729|CALD1|800|caldesmon 1##AF247820|CALD1|800|caldesmon 1##M83216|CALD1|800|caldesmon 1	0.990622	0.0	denovo_WM_7:-6:0.834
chr8	28205773	28205953	reg1005011.p2	6.110	+	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-31138	+	NM_018091 TSC_hg19_v1_chr8_+_27950679 AK302140 AK296475 AK022626 AK295574 AK001284 AK293424 AK315985 AK316053 AK298265 BC001240 AL834273 AB463602 AM392633	-255206	+	AB075870 NM_001010906	-264476	-	BC001237 TSC_hg19_v1_chr8_-_28243694	37779	-	AK002050 AK023418 NM_018660 AB057659 AB073627	38098	-	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	141916	-	NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##NM_018091|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK302140|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK296475|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK022626|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK295574|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK001284|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK293424|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK315985|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK316053|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK298265|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##BC001240|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AL834273|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AM392633|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AB075870|C8orf80|389643|chromosome 8 open reading frame 80##NM_001010906|C8orf80|389643|chromosome 8 open reading frame 80##BC001237|ZNF395|55893|zinc finger protein 395##AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16	1.942954	0.0	denovo_WM_7:-65:0.901
chr16	58280536	58280656	reg1006857.p2	6.109	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	-48885	-	TSC_hg19_v1_chr16_-_58163286 NM_013242	-117286	-	TSC_hg19_v1_chr16_-_58163283 AK027099 AK297819 BC005152 AF087845 AF093680	-117364	-	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	3272	+	AK302175 AK058068 BC057843 NM_001080492	48318	-	NM_001126129 NM_001126130 NM_022770 TSC_hg19_v1_chr16_+_58426340 AK315622 AK023974 BC014437 BC005879 CR457283	145805	+	DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_013242|C16orf80|29105|chromosome 16 open reading frame 80##AK027099|C16orf80|29105|chromosome 16 open reading frame 80##AK297819|C16orf80|29105|chromosome 16 open reading frame 80##BC005152|C16orf80|29105|chromosome 16 open reading frame 80##AF087845|C16orf80|29105|chromosome 16 open reading frame 80##AF093680|C16orf80|29105|chromosome 16 open reading frame 80##AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54##NM_001126129|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_001126130|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_022770|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK315622|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK023974|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC014437|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC005879|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##CR457283|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)	0.987341	0.0	denovo_WM_7:0:0.818
chr8	47868342	47868522	reg1007320.p1	6.108	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-4720827	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-4872785	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-4872799	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	305063	+	TSC_hg19_v1_chr8_+_48173521 AK303579	305087	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	305100	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.912892	0.0	denovo_WM_7:-10:0.300	denovo_WM_7:-18:0.248	denovo_WM_7:-19:0.250
chr10	50385428	50385590	reg1006206.p1	6.105	+	BC029839 BC047597 NM_001164484	-43451	-	TSC_hg19_v1_chr10_-_50323537 BC041414 AK297931 AK056299 NM_001031746 NM_144984	-61986	-	NM_001006939 BC036722	-263229	-	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	10917	-	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	121702	+	NM_001080520	214397	-	BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##BC041414|VSTM4|196740|V-set and transmembrane domain containing 4##AK297931|VSTM4|196740|V-set and transmembrane domain containing 4##AK056299|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001031746|VSTM4|196740|V-set and transmembrane domain containing 4##NM_144984|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001006939|LRRC18|474354|leucine rich repeat containing 18##BC036722|LRRC18|474354|leucine rich repeat containing 18##DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##NM_001080520|DRGX|644168|dorsal root ganglia homeobox	0.979278	0.0	denovo_WM_7:-10:0.937
chr15	78725088	78725264	reg1006211.p1	6.105	+	TSC_hg19_v1_chr15_+_78632694 NM_004378 AB593091 BC022069 S74445 DQ896830 EU176284 CR457017 AL110113	-92473	+	TSC_hg19_v1_chr15_-_78591935 AF127799 AF100786 BC010080 AK311320 BC002565 AK024754 NM_025234 AK300838 AK304617 AK310477	-133203	-	BC031044 NM_001130183	-166636	+	TSC_hg19_v1_chr15_+_78730557 NM_004136	5345	+	TSC_hg19_v1_chr15_+_78730595 AB209403 BC017880 AK292992 BC117481 BC117483 BC143948 AB586699 HQ258663 M58511	5447	+	TSC_hg19_v1_chr15_+_78799930 NM_001013619 NM_001083612 AK126453 BC132753 BC144383	74751	+	NM_004378|CRABP1|1381|cellular retinoic acid binding protein 1##AB593091|CRABP1|1381|cellular retinoic acid binding protein 1##BC022069|CRABP1|1381|cellular retinoic acid binding protein 1##S74445|CRABP1|1381|cellular retinoic acid binding protein 1##DQ896830|CRABP1|1381|cellular retinoic acid binding protein 1##EU176284|CRABP1|1381|cellular retinoic acid binding protein 1##CR457017|CRABP1|1381|cellular retinoic acid binding protein 1##AL110113|CRABP1|1381|cellular retinoic acid binding protein 1##AF127799|WDR61|80349|WD repeat domain 61##AF100786|WDR61|80349|WD repeat domain 61##BC010080|WDR61|80349|WD repeat domain 61##AK311320|WDR61|80349|WD repeat domain 61##AK024754|WDR61|80349|WD repeat domain 61##NM_025234|WDR61|80349|WD repeat domain 61##AK300838|WDR61|80349|WD repeat domain 61##AK304617|WDR61|80349|WD repeat domain 61##BC031044|DNAJA4|55466|DnaJ (Hsp40) homolog, subfamily A, member 4##NM_001130183|DNAJA4|55466|DnaJ (Hsp40) homolog, subfamily A, member 4##NM_004136|IREB2|3658|iron-responsive element binding protein 2##AB209403|IREB2|3658|iron-responsive element binding protein 2##BC017880|IREB2|3658|iron-responsive element binding protein 2##AK292992|IREB2|3658|iron-responsive element binding protein 2##BC117481|IREB2|3658|iron-responsive element binding protein 2##BC117483|IREB2|3658|iron-responsive element binding protein 2##BC143948|IREB2|3658|iron-responsive element binding protein 2##HQ258663|IREB2|3658|iron-responsive element binding protein 2##M58511|IREB2|3658|iron-responsive element binding protein 2##NM_001013619|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##NM_001083612|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##AK126453|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC132753|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC144383|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1	1.118672	0.0	
chr1	155499259	155499439	reg1000527.p2	6.103	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-205057	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-205407	-	BC052277 NM_001105205	-205622	+	AF257305 TSC_hg19_v1_chr1_-_155532251	32857	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	33018	-	TSC_hg19_v1_chr1_-_155532562 AK307595	33232	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.0	0.0	
chr1	16300991	16301142	reg1006569.p1	6.103	+	TSC_hg19_v1_chr1_+_16259065 BC172907	-41955	+	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	-126687	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-138710	-	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	1404	-	AK127425 BC017946 NM_178840 CU676116	29697	+	TSC_hg19_v1_chr1_-_16344539 DQ892716 DQ895966 EU176383 EU831930 EU832025 AL832181 AF155908 AJ243191 CR749298 BX537990 AK075151 AK095911 CR749419	43447	-	AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##AK094772|FLJ37453|729614|uncharacterized LOC729614##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17##AK127425|C1orf64|149563|chromosome 1 open reading frame 64##BC017946|C1orf64|149563|chromosome 1 open reading frame 64##NM_178840|C1orf64|149563|chromosome 1 open reading frame 64##DQ892716|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##DQ895966|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU176383|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU831930|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##EU832025|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AL832181|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AF155908|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AJ243191|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##CR749298|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##BX537990|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK075151|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##AK095911|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)##CR749419|HSPB7|27129|heat shock 27kDa protein family, member 7 (cardiovascular)	0.996188	0.0	denovo_WM_7:9:0.538
chr12	74881965	74882135	reg1006098.p1	6.103	+	TSC_hg19_v1_chr12_-_72667288 BC040230	-2214780	-	AF126372 TSC_hg19_v1_chr12_+_72666537 BC142706 BC150181 NM_013381 AY358765	-2215546	+	AK095156 TSC_hg19_v1_chr12_-_72666355	-2215707	-	NM_001136262 TSC_hg19_v1_chr12_+_74931614 AK056642	49535	+	TSC_hg19_v1_chr12_+_74931622 BC009111 AL713650	49589	+	AK054742 TSC_hg19_v1_chr12_+_74933681	51570	+	BC040230|LOC283392|283392|uncharacterized LOC283392##AF126372|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##BC142706|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##BC150181|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##NM_013381|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##AY358765|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##AK095156|LOC283392|283392|uncharacterized LOC283392##NM_001136262|ATXN7L3B|552889|ataxin 7-like 3B##AK056642|ATXN7L3B|552889|ataxin 7-like 3B##BC009111|ATXN7L3B|552889|ataxin 7-like 3B##AL713650|ATXN7L3B|552889|ataxin 7-like 3B	0.0	0.0	
chr12	108694705	108694866	reg1008111.p1	6.102	+	BC110330 AB018332 NM_014653	-171298	+	AY238895 NM_203436	-526624	+	TSC_hg19_v1_chr12_-_108154938 BC068562	-539784	-	NM_001142345	19653	-	U79526 U79527 AK291800 NM_001142343 NM_001142344 NM_004072	38299	-	TSC_hg19_v1_chr12_+_108909056 AK026074 NM_007076 AK000014 AY358992 BC001342 BC064629	214297	+	BC110330|WSCD2|9671|WSC domain containing 2##AB018332|WSCD2|9671|WSC domain containing 2##NM_014653|WSCD2|9671|WSC domain containing 2##AY238895|ASCL4|121549|achaete-scute complex homolog 4 (Drosophila)##NM_203436|ASCL4|121549|achaete-scute complex homolog 4 (Drosophila)##BC068562|PRDM4|11108|PR domain containing 4##NM_001142345|CMKLR1|1240|chemokine-like receptor 1##U79526|CMKLR1|1240|chemokine-like receptor 1##U79527|CMKLR1|1240|chemokine-like receptor 1##AK291800|CMKLR1|1240|chemokine-like receptor 1##NM_001142343|CMKLR1|1240|chemokine-like receptor 1##NM_001142344|CMKLR1|1240|chemokine-like receptor 1##NM_004072|CMKLR1|1240|chemokine-like receptor 1##AK026074|FICD|11153|FIC domain containing##NM_007076|FICD|11153|FIC domain containing##AK000014|FICD|11153|FIC domain containing##AY358992|FICD|11153|FIC domain containing##BC001342|FICD|11153|FIC domain containing##BC064629|FICD|11153|FIC domain containing	0.995795	0.0	
chr12	113660885	113661065	reg1003474.p1	6.102	+	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	-1672	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	-1695	+	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	-1732	+	BC098174 BC098360 TSC_hg19_v1_chr12_-_113772887	111886	-	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	111950	-	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	135396	+	BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##BC098360|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2	0.0	0.0	
chr1	27481967	27482147	reg1000091.p2	6.102	+	M96066 S68616 NM_003047 TSC_hg19_v1_chr1_-_27481521	-596	-	TSC_hg19_v1_chr1_-_27339448 AK122816	-142603	-	BC012790 BC014160 NM_052943 TSC_hg19_v1_chr1_-_27339338	-142723	-	NM_015023 TSC_hg19_v1_chr1_+_27561056	78977	+	TSC_hg19_v1_chr1_+_27561124 AK315564	79070	+	TSC_hg19_v1_chr1_+_27561153 BC032523	79105	+	M96066|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##S68616|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##NM_003047|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##AK122816|FAM46B|115572|family with sequence similarity 46, member B##BC012790|FAM46B|115572|family with sequence similarity 46, member B##BC014160|FAM46B|115572|family with sequence similarity 46, member B##NM_052943|FAM46B|115572|family with sequence similarity 46, member B##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1	0.0	0.0	
chr5	148799111	148799291	reg1006616.p1	6.102	+	TSC_hg19_v1_chr5_+_148786440 AK126481 CR933654 BX640700	-12719	+	AB590699 CR457192 BC113925 BC113946 AF152098 AF184969 AF218727 AY358931 AF110385 AF212311 NM_014443 TSC_hg19_v1_chr5_-_148758856	-40379	-	TSC_hg19_v1_chr5_+_148737613 AF451985 BC000014	-61578	+	AF218004 TSC_hg19_v1_chr5_-_148930935 AK303794 BC021971 BC025371 BC007246	131723	-	TSC_hg19_v1_chr5_-_148930950 AK294942	131765	-	TSC_hg19_v1_chr5_-_148931006 NM_001025105 NM_001892	131805	-	AK126481|MIR143HG|728264|MIR143 host gene (non-protein coding)##CR933654|MIR143HG|728264|MIR143 host gene (non-protein coding)##CR457192|IL17B|27190|interleukin 17B##BC113925|IL17B|27190|interleukin 17B##BC113946|IL17B|27190|interleukin 17B##AF152098|IL17B|27190|interleukin 17B##AF184969|IL17B|27190|interleukin 17B##AF218727|IL17B|27190|interleukin 17B##AY358931|IL17B|27190|interleukin 17B##AF110385|IL17B|27190|interleukin 17B##AF212311|IL17B|27190|interleukin 17B##NM_014443|IL17B|27190|interleukin 17B##AF451985|PCYOX1L|78991|prenylcysteine oxidase 1 like##BC000014|PCYOX1L|78991|prenylcysteine oxidase 1 like##AF218004|CSNK1A1|1452|casein kinase 1, alpha 1##AK303794|CSNK1A1|1452|casein kinase 1, alpha 1##BC021971|CSNK1A1|1452|casein kinase 1, alpha 1##BC025371|CSNK1A1|1452|casein kinase 1, alpha 1##BC007246|CSNK1A1|1452|casein kinase 1, alpha 1##AK294942|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001025105|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001892|CSNK1A1|1452|casein kinase 1, alpha 1	0.988556	0.0	denovo_WM_7:-48:0.416	denovo_WM_7:-49:0.371
chr14	34114264	34114378	reg1005890.p1	6.101	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-705831	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1315785	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1567815	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	305828	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	817166	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	894564	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	1.400279	0.0	denovo_WM_7:-8:0.209	denovo_WM_7:-25:0.833
chr6	109127034	109127179	reg1006944.p1	6.101	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	-244849	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	-245031	+	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	-246083	+	TSC_hg19_v1_chr6_+_109169624 AK294574 NM_032131 AK292499 BC030603	42515	+	AF033121 NM_001199934	203084	-	TSC_hg19_v1_chr6_-_109330747 AF033120	203610	-	AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##AK294574|ARMC2|84071|armadillo repeat containing 2##NM_032131|ARMC2|84071|armadillo repeat containing 2##AK292499|ARMC2|84071|armadillo repeat containing 2##BC030603|ARMC2|84071|armadillo repeat containing 2##AF033121|SESN1|27244|sestrin 1##NM_001199934|SESN1|27244|sestrin 1##AF033120|SESN1|27244|sestrin 1	0.054359	0.0	
chr9	19138413	19138593	reg1004316.p2	6.101	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-10955	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-11026	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-35494	-	NM_017925 BC144484 BC144485	152248	+	TSC_hg19_v1_chr9_-_19378815 BC035447	240363	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	241724	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	0.997722	0.0	denovo_WM_7:59:0.305	denovo_WM_7:60:0.305	denovo_WM_7:61:0.305
chr1	236043505	236043673	reg1004991.p1	6.100	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-13345	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-13406	-	BC022485 NM_001098721 NM_004485	-229536	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	184788	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	184836	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	184889	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	0.0	0.0	
chr6	37530814	37530912	reg1006584.p1	6.100	+	TSC_hg19_v1_chr6_-_37467691 BC104835 AF161383 NM_138493	-63167	-	TSC_hg19_v1_chr6_-_37467667 BC003515 BC108655	-63211	-	AB385274 TSC_hg19_v1_chr6_+_37403469	-127426	+	TSC_hg19_v1_chr6_-_37665660 AF478693 NM_153487	134843	-	TSC_hg19_v1_chr6_+_37787274 NM_021943	256427	+	TSC_hg19_v1_chr6_+_37787655 AK023284 BC031481 DQ891133 DQ894312	256827	+	BC104835|CCDC167|154467|coiled-coil domain containing 167##AF161383|CCDC167|154467|coiled-coil domain containing 167##NM_138493|CCDC167|154467|coiled-coil domain containing 167##BC003515|CCDC167|154467|coiled-coil domain containing 167##BC108655|CCDC167|154467|coiled-coil domain containing 167##AF478693|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_153487|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_021943|ZFAND3|60685|zinc finger, AN1-type domain 3##AK023284|ZFAND3|60685|zinc finger, AN1-type domain 3##BC031481|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ891133|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ894312|ZFAND3|60685|zinc finger, AN1-type domain 3	0.996143	0.0	denovo_WM_7:-45:0.889
chr11	108535529	108535668	reg1010104.p1	6.099	+	BC113119 BC117701 TSC_hg19_v1_chr11_-_108464372 AY099469 NM_015065 AB014524	-71194	-	TSC_hg19_v1_chr11_-_108369112 AK313534 AF533708 BC036526 NM_153705	-166403	-	BC059411 BC029536 AK303096 NM_152587	-197356	-	TSC_hg19_v1_chr11_+_108535795 AK296752 BC091521 AB040537 NM_004398 U28042 AK315216 BC093654 BC093656 AB209884 BC064921 BC049217	216	+	TSC_hg19_v1_chr11_+_109292850 AK303693 NM_207645	757245	+	BC068577 TSC_hg19_v1_chr11_+_109292911 BC035798	757301	+	BC113119|EXPH5|23086|exophilin 5##BC117701|EXPH5|23086|exophilin 5##AY099469|EXPH5|23086|exophilin 5##NM_015065|EXPH5|23086|exophilin 5##AB014524|EXPH5|23086|exophilin 5##AK313534|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##AF533708|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC036526|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##NM_153705|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC029536|C11orf65|160140|chromosome 11 open reading frame 65##AK303096|C11orf65|160140|chromosome 11 open reading frame 65##NM_152587|C11orf65|160140|chromosome 11 open reading frame 65##AK296752|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC091521|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB040537|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##NM_004398|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##U28042|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK315216|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093654|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093656|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB209884|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC064921|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC049217|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK303693|C11orf87|399947|chromosome 11 open reading frame 87##NM_207645|C11orf87|399947|chromosome 11 open reading frame 87##BC068577|C11orf87|399947|chromosome 11 open reading frame 87##BC035798|C11orf87|399947|chromosome 11 open reading frame 87	0.0	0.0	
chr11	312563	312701	reg1006896.p1	6.098	+	NM_006435 TSC_hg19_v1_chr11_+_308199 BC009696 DQ891667 DQ894615 BT009859 CR456894 CR541874 X02490	-4462	+	BC150562 BC150563 NM_001025295	-13111	-	TSC_hg19_v1_chr11_+_289125 AK074155 NM_025092 BC066641	-23490	+	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	1379	+	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	8212	-	TSC_hg19_v1_chr11_-_320925 X57352	8355	-	NM_006435|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BC009696|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##DQ891667|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##DQ894615|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BT009859|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##CR456894|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##CR541874|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##X02490|IFITM2|10581|interferon induced transmembrane protein 2 (1-8D)##BC150562|IFITM5|387733|interferon induced transmembrane protein 5##BC150563|IFITM5|387733|interferon induced transmembrane protein 5##NM_001025295|IFITM5|387733|interferon induced transmembrane protein 5##AK074155|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##NM_025092|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC066641|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##X57352|IFITM3|10410|interferon induced transmembrane protein 3	0.998452	0.0	denovo_WM_7:-14:0.720
chr2	224662767	224662911	reg1007406.p1	6.098	+	TSC_hg19_v1_chr2_-_224467145 NM_003469	-195660	-	TSC_hg19_v1_chr2_-_224467100 BC022509	-195732	-	M25756 TSC_hg19_v1_chr2_-_224467083 AK298828 AK312452	-195773	-	AF393369 BC021898 TSC_hg19_v1_chr2_-_224702284 AK025338 AK299026	39410	-	TSC_hg19_v1_chr2_-_224702300 BC009606 NM_001039569	39471	-	TSC_hg19_v1_chr2_-_224810010 AF411977 AB527455 CU691898	147154	-	NM_003469|SCG2|7857|secretogranin II##BC022509|SCG2|7857|secretogranin II##M25756|SCG2|7857|secretogranin II##AK298828|SCG2|7857|secretogranin II##AK312452|SCG2|7857|secretogranin II##AF393369|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC021898|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK025338|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK299026|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC009606|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_001039569|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AF411977|WDFY1|57590|WD repeat and FYVE domain containing 1	0.0	0.0	
chr1	3582119	3582234	reg1000575.p1	6.097	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-13050	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-15560	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-40567	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	25082	+	AK310432 NM_001204192 AK302118	32439	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	81741	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	0.998103	0.0	denovo_WM_7:53:0.409	denovo_WM_7:54:0.409
chr15	52298632	52298753	reg1007214.p2	6.097	+	TSC_hg19_v1_chr15_-_52263976 BC018147 NM_138792 AK055762 AK297972 AY302186	-34730	-	TSC_hg19_v1_chr15_+_52201590 AK025704	-97082	+	TSC_hg19_v1_chr15_+_52121876 BX647277 AF177171 BC020542	-176673	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	12727	+	TSC_hg19_v1_chr15_+_52311432 CR749401	12742	+	TSC_hg19_v1_chr15_+_52311442 BC035492	12769	+	BC018147|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_138792|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK055762|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK297972|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AY302186|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK025704|TMOD3|29766|tropomodulin 3 (ubiquitous)##BX647277|TMOD3|29766|tropomodulin 3 (ubiquitous)##AF177171|TMOD3|29766|tropomodulin 3 (ubiquitous)##BC020542|TMOD3|29766|tropomodulin 3 (ubiquitous)##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##BC035492|MAPK6|5597|mitogen-activated protein kinase 6	0.0	0.0	
chr16	69603147	69603322	reg1007316.p2	6.097	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	-3053	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	-3318	+	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	-3366	+	AF134870 TSC_hg19_v1_chr16_+_69681070	77780	+	U80231 AK000312 TSC_hg19_v1_chr16_+_69726827	123555	+	TSC_hg19_v1_chr16_-_69760362 AK316246	157126	-	AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF134870|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##U80231|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK000312|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK316246|NQO1|1728|NAD(P)H dehydrogenase, quinone 1	0.995535	0.0	denovo_WM_7:1:0.982
chr19	10978247	10978410	reg1006115.p1	6.097	+	BC157863 NM_001136482	-19223	+	AB528501 DQ892640 DQ895878 BC002443 BC018831 TSC_hg19_v1_chr19_-_10946889 U41804 NM_006858	-31404	-	TSC_hg19_v1_chr19_+_10828827 BC039596 AK289831	-149469	+	TSC_hg19_v1_chr19_+_10982255 NM_199141	3922	+	TSC_hg19_v1_chr19_+_10982381 AL833242	4108	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	60911	-	BC157863|C19orf38|255809|chromosome 19 open reading frame 38##NM_001136482|C19orf38|255809|chromosome 19 open reading frame 38##DQ892640|TMED1|11018|transmembrane emp24 protein transport domain containing 1##DQ895878|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC002443|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC018831|TMED1|11018|transmembrane emp24 protein transport domain containing 1##U41804|TMED1|11018|transmembrane emp24 protein transport domain containing 1##NM_006858|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC039596|DNM2|1785|dynamin 2##AK289831|DNM2|1785|dynamin 2##NM_199141|CARM1|10498|coactivator-associated arginine methyltransferase 1##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2	2.626662	0.0	denovo_WM_7:-4:0.695	denovo_WM_7:-5:0.268	denovo_WM_7:10:0.835	denovo_WM_7:-25:0.487
chr22	20979748	20979890	reg1007175.p1	6.097	+	TSC_hg19_v1_chr22_+_20918811 U80745	-60995	+	BC017110 TSC_hg19_v1_chr22_+_20909388	-70512	+	AB463109 CU013137 CU013425 AF328769 TSC_hg19_v1_chr22_+_20861965	-117855	+	L36151 NM_002650	109135	-	TSC_hg19_v1_chr22_+_21128411 NM_000185 AK314200 AK225292 BC035028	148577	+	AB384703 TSC_hg19_v1_chr22_-_21213029 AK302424	233211	-	U80745|MED15|51586|mediator complex subunit 15##BC017110|MED15|51586|mediator complex subunit 15##CU013137|MED15|51586|mediator complex subunit 15##CU013425|MED15|51586|mediator complex subunit 15##AF328769|MED15|51586|mediator complex subunit 15##L36151|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha##NM_002650|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha##NM_000185|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK314200|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK225292|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##BC035028|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK302424|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha	0.96058	0.0	denovo_WM_7:-6:0.648
chr1	224037133	224037273	reg1006370.p2	6.096	+	NM_001031685 NM_005426 TSC_hg19_v1_chr1_-_224033682	-3509	-	TSC_hg19_v1_chr1_-_224033620 BC046150 AJ318888 U58334 BC058918	-3580	-	AB384887 TSC_hg19_v1_chr1_-_224033497 AK294432	-3740	-	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	264607	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	333719	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	333784	+	NM_001031685|TP53BP2|7159|tumor protein p53 binding protein, 2##NM_005426|TP53BP2|7159|tumor protein p53 binding protein, 2##BC046150|TP53BP2|7159|tumor protein p53 binding protein, 2##AJ318888|TP53BP2|7159|tumor protein p53 binding protein, 2##U58334|TP53BP2|7159|tumor protein p53 binding protein, 2##BC058918|TP53BP2|7159|tumor protein p53 binding protein, 2##AK294432|TP53BP2|7159|tumor protein p53 binding protein, 2##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1	0.929402	0.0	denovo_WM_7:-9:0.298	denovo_WM_7:-10:0.610
chr10	94870465	94870615	reg1008126.p1	6.095	+	AK075374 NM_000783 AF005418	-36884	+	AK027560 NM_057157	-37309	+	AY356349 NM_183374	-49520	+	TSC_hg19_v1_chr10_-_95242092 AB033033 AF207990 AB384582 AF182316 BC052617 BC040110 NM_013451 NM_133337	371508	-	TSC_hg19_v1_chr10_+_95256395 NM_001127182 AY788918 NM_018131 AK315536 BX640718 AK223495 AB091343 BC008947	385848	+	TSC_hg19_v1_chr10_+_95326409 NM_001195755 NM_181745 AK301525 AB115768 AY288417 BC101175 AY255573	455969	+	AK075374|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_000783|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AF005418|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AK027560|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_057157|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##AB033033|MYOF|26509|myoferlin##AF207990|MYOF|26509|myoferlin##AF182316|MYOF|26509|myoferlin##BC052617|MYOF|26509|myoferlin##BC040110|MYOF|26509|myoferlin##NM_013451|MYOF|26509|myoferlin##NM_133337|MYOF|26509|myoferlin##NM_001127182|CEP55|55165|centrosomal protein 55kDa##AY788918|CEP55|55165|centrosomal protein 55kDa##NM_018131|CEP55|55165|centrosomal protein 55kDa##AK315536|CEP55|55165|centrosomal protein 55kDa##BX640718|CEP55|55165|centrosomal protein 55kDa##AK223495|CEP55|55165|centrosomal protein 55kDa##AB091343|CEP55|55165|centrosomal protein 55kDa##BC008947|CEP55|55165|centrosomal protein 55kDa##NM_001195755|O3FAR1|338557|omega-3 fatty acid receptor 1##NM_181745|O3FAR1|338557|omega-3 fatty acid receptor 1##AK301525|O3FAR1|338557|omega-3 fatty acid receptor 1##AB115768|O3FAR1|338557|omega-3 fatty acid receptor 1##AY288417|O3FAR1|338557|omega-3 fatty acid receptor 1##BC101175|O3FAR1|338557|omega-3 fatty acid receptor 1##AY255573|O3FAR1|338557|omega-3 fatty acid receptor 1	0.0	0.0	
chr13	78132951	78133080	reg1005168.p1	6.095	+	NM_001160706 NM_003843 NM_144777 BC020726 AF045941 AK025320 AK222720 AK301659	-23164	+	NM_015057 TSC_hg19_v1_chr13_-_77901230	-231812	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	-531684	-	TSC_hg19_v1_chr13_+_78271822 NM_001242868	138889	+	AK294201 NM_001040153	140000	+	NM_001242869 NM_001242870 NM_001242871 NM_144595 AL834203 AK289600 BC045177 AK289714 AK295423	182391	+	NM_001160706|SCEL|8796|sciellin##NM_003843|SCEL|8796|sciellin##NM_144777|SCEL|8796|sciellin##BC020726|SCEL|8796|sciellin##AF045941|SCEL|8796|sciellin##AK025320|SCEL|8796|sciellin##AK222720|SCEL|8796|sciellin##AK301659|SCEL|8796|sciellin##NM_015057|MYCBP2|23077|MYC binding protein 2##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1##AK294201|SLAIN1|122060|SLAIN motif family, member 1##NM_001040153|SLAIN1|122060|SLAIN motif family, member 1##NM_001242869|SLAIN1|122060|SLAIN motif family, member 1##NM_001242870|SLAIN1|122060|SLAIN motif family, member 1##NM_001242871|SLAIN1|122060|SLAIN motif family, member 1##NM_144595|SLAIN1|122060|SLAIN motif family, member 1##AL834203|SLAIN1|122060|SLAIN motif family, member 1##AK289600|SLAIN1|122060|SLAIN motif family, member 1##BC045177|SLAIN1|122060|SLAIN motif family, member 1##AK289714|SLAIN1|122060|SLAIN motif family, member 1##AK295423|SLAIN1|122060|SLAIN motif family, member 1	0.998387	0.0	
chr21	45640645	45640778	reg1007261.p2	6.095	+	TSC_hg19_v1_chr21_+_45553564 D86062 BC003587 D86061	-87150	+	TSC_hg19_v1_chr21_+_45553491 NM_004649 NM_198155 U53003 BC002370 Y07572	-87206	+	TSC_hg19_v1_chr21_+_45527269 U53346 X95263 BC013309 BC014988	-113412	+	AF216749 CU687930 AB528572 AF199028 BC064637 AF289028 TSC_hg19_v1_chr21_-_45660825 AB014553 NM_015259	20055	-	TSC_hg19_v1_chr21_-_45660850 AK090492 AK290192 AK294031 AK311496 AK314369 AX746477	20146	-	AF194032 NM_013369 NM_175867	41387	-	D86062|C21orf33|8209|chromosome 21 open reading frame 33##BC003587|C21orf33|8209|chromosome 21 open reading frame 33##D86061|C21orf33|8209|chromosome 21 open reading frame 33##NM_004649|C21orf33|8209|chromosome 21 open reading frame 33##NM_198155|C21orf33|8209|chromosome 21 open reading frame 33##U53003|C21orf33|8209|chromosome 21 open reading frame 33##BC002370|C21orf33|8209|chromosome 21 open reading frame 33##Y07572|C21orf33|8209|chromosome 21 open reading frame 33##U53346|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##X95263|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC013309|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC014988|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##AF216749|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF199028|ICOSLG|23308|inducible T-cell co-stimulator ligand##BC064637|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF289028|ICOSLG|23308|inducible T-cell co-stimulator ligand##AB014553|ICOSLG|23308|inducible T-cell co-stimulator ligand##NM_015259|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK090492|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK290192|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK294031|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK311496|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK314369|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF194032|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_013369|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_175867|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like	0.969867	0.0	denovo_WM_7:-31:0.883
chr6	149228930	149229086	reg1006079.p1	6.095	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-160799	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-564817	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-565018	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	410095	+	AK315038 NM_015093 AK307650	410433	+	AY340238 NM_001002255 BC130305 HQ258040	492500	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.998889	0.0	
chr9	94476590	94476724	reg1005484.p1	6.095	+	TSC_hg19_v1_chr9_-_94186159 NM_005384	-290475	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	-290613	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-352458	-	TSC_hg19_v1_chr9_-_94711095 BC033697	234471	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	235732	-	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	401007	-	NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1	0.997547	0.0	
chr16	57557162	57557342	reg1001170.p2	6.094	+	BC003541 TSC_hg19_v1_chr16_-_57520403 NM_018110 AK001350	-36867	-	TSC_hg19_v1_chr16_+_57496590 BC003159 AK300124 AK293112 BC028157 AJ224143 AJ224144 J05448 BC000409 AB464040 AF008443 CR542041 DQ891411 DQ894586 EU176305	-60647	+	TSC_hg19_v1_chr16_+_57496570 AK295582	-60681	+	BC008285 BC009941 NM_033212	13213	-	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	19302	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	19336	+	BC003541|DOK4|55715|docking protein 4##NM_018110|DOK4|55715|docking protein 4##AK001350|DOK4|55715|docking protein 4##BC003159|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK300124|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK293112|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC028157|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224143|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224144|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##J05448|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC000409|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AF008443|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##CR542041|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ891411|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ894586|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##EU176305|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114	0.0	0.0	
chr20	35098925	35099076	reg1007950.p2	6.093	+	NM_183006 BC153874 TSC_hg19_v1_chr20_+_35090197 BC108706	-8825	+	TSC_hg19_v1_chr20_+_35089870 NM_001042486 AK001681	-9131	+	NM_014902	-103557	+	TSC_hg19_v1_chr20_+_35169892 NM_006097 NM_181526	70886	+	TSC_hg19_v1_chr20_+_35169921 D82057 AK130879 AK097235 BC002648 AF176042 AF176043	70923	+	BC039668 TSC_hg19_v1_chr20_-_35201701	102691	-	NM_183006|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC153874|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC108706|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_001042486|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##AK001681|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_014902|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_006097|MYL9|10398|myosin, light chain 9, regulatory##NM_181526|MYL9|10398|myosin, light chain 9, regulatory##D82057|MYL9|10398|myosin, light chain 9, regulatory##AK130879|MYL9|10398|myosin, light chain 9, regulatory##AK097235|MYL9|10398|myosin, light chain 9, regulatory##BC002648|MYL9|10398|myosin, light chain 9, regulatory##AF176042|MYL9|10398|myosin, light chain 9, regulatory##AF176043|MYL9|10398|myosin, light chain 9, regulatory	0.99941	0.0	denovo_WM_7:-14:0.739
chr2	95728808	95728971	reg1004075.p1	6.093	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	-37407	+	AK097438 BC021716 NM_144705 AK296678 CU692394	-191639	+	TSC_hg19_v1_chr2_-_91847997 BC030764	-3880886	-	TSC_hg19_v1_chr2_-_95787546 CU680814 DQ892620 DQ895860 AK058160 AK295812	58653	-	AB049940 TSC_hg19_v1_chr2_-_95787749 BC014172 NM_031902	58823	-	AK027363 NM_032788	96373	-	BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##DQ892620|MRPS5|64969|mitochondrial ribosomal protein S5##DQ895860|MRPS5|64969|mitochondrial ribosomal protein S5##AK058160|MRPS5|64969|mitochondrial ribosomal protein S5##AB049940|MRPS5|64969|mitochondrial ribosomal protein S5##BC014172|MRPS5|64969|mitochondrial ribosomal protein S5##NM_031902|MRPS5|64969|mitochondrial ribosomal protein S5##AK027363|ZNF514|84874|zinc finger protein 514##NM_032788|ZNF514|84874|zinc finger protein 514	0.90139	0.0	denovo_WM_7:-78:0.292	denovo_WM_7:-79:0.290
chr4	25881798	25881978	reg1003986.p1	6.093	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-17334	-	NM_001177999 AK314514	-223798	+	NM_001177998 NM_006424 AK292675 AF111856 AK075046 TSC_hg19_v1_chr4_+_25657473 AF146796 BC142704 BC146666	-224428	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	33976	+	L07875 BC020780 NM_005349 NM_203283	439431	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	440421	+	BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001177998|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_006424|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK292675|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF111856|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK075046|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AF146796|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC142704|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##BC146666|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.0	0.0	
chrX	122547530	122547710	reg1000391.p2	6.093	+	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	-229380	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-2366180	+	BC029540 NM_001080141 NM_001080146	-2427983	-	TSC_hg19_v1_chrX_-_122866885 AK001758	319263	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	319277	-	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	446322	+	NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2##AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis	0.0	0.0	
chr14	103278136	103278316	reg1006394.p3	6.092	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-34326	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-34407	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-219065	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	110772	+	TSC_hg19_v1_chr14_-_103430941 BX248752	152732	-	AB384568 TSC_hg19_v1_chr14_-_103523568	245315	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	1.979702	0.0	denovo_WM_7:31:0.265	denovo_WM_7:32:0.715	denovo_WM_7:47:0.848
chr2	80818497	80818637	reg1006789.p1	6.092	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-286724	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-286842	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-287042	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3867803	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3867828	-	NM_003849	3868018	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.995176	0.0	
chr4	57299664	57299844	reg1007844.p2	6.091	+	AF516672 AY422212 BC142709 TSC_hg19_v1_chr4_-_57253644 AF161436 AK303733 BC141824 AK294332 AY314787 BC015096 NM_181806 AK316296 AK304309 BX648853	-46127	-	AK126014 NM_020722	-263394	+	AK023683 NM_025009 TSC_hg19_v1_chr4_+_56815093 BC136535 BC136536	-484663	+	AB590152 CU678610 DQ893484 DQ896410 TSC_hg19_v1_chr4_-_57301775 AK290942 BC004200 U00238 AK222759 D13757 AK312297 NM_002703	2002	-	TSC_hg19_v1_chr4_+_57301910 NM_006452 AK294821 BC010273	2165	+	NM_001079524 NM_001079525 TSC_hg19_v1_chr4_+_57302303 CR749824 BC019255	2551	+	AF516672|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY422212|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC142709|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AF161436|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK303733|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC141824|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK294332|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY314787|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC015096|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##NM_181806|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK316296|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK304309|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BX648853|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK126014|KIAA1211|57482|KIAA1211##NM_020722|KIAA1211|57482|KIAA1211##AK023683|CEP135|9662|centrosomal protein 135kDa##NM_025009|CEP135|9662|centrosomal protein 135kDa##BC136535|CEP135|9662|centrosomal protein 135kDa##BC136536|CEP135|9662|centrosomal protein 135kDa##DQ893484|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##DQ896410|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK290942|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##BC004200|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##U00238|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK222759|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##D13757|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK312297|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_002703|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_006452|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK294821|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC010273|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079524|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079525|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##CR749824|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC019255|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase	0.99773	0.0	denovo_WM_7:-84:0.527	denovo_WM_7:-85:0.470
chr3	171889516	171889657	reg1004606.p1	6.090	+	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-131249	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-132128	+	TSC_hg19_v1_chr3_+_171757437 AK127826	-132152	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	276637	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	351592	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	539304	-	AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1	0.980423	0.0	denovo_WM_7:1:0.628	denovo_WM_7:2:0.322
chr10	102026874	102027033	reg1007337.p1	6.089	+	TSC_hg19_v1_chr10_-_101989343 NM_001278 AF080157	-37595	-	U22512 AF012890 AB590489 BC092514 TSC_hg19_v1_chr10_-_101989331 AF009225 AB209028	-37687	-	TSC_hg19_v1_chr10_-_101945787 AF064093 NM_001100626	-81151	-	AL832515 CU679081 AK023984 BC008746 AK001860 AK225590 TSC_hg19_v1_chr10_-_102027422 AK295303 AK097895 NM_018294	433	-	BC020494 AY278457 AK054697 NM_001001342	19077	-	AY531265 AB463442 TSC_hg19_v1_chr10_-_102046438 AB593084 AK298969 NM_173809	19485	-	NM_001278|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF080157|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##U22512|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF012890|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC092514|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF009225|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AB209028|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF064093|ERLIN1|10613|ER lipid raft associated 1##NM_001100626|ERLIN1|10613|ER lipid raft associated 1##AL832515|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK023984|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC008746|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK001860|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK225590|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK295303|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK097895|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##NM_018294|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC020494|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY278457|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK054697|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_001001342|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY531265|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AB593084|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK298969|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_173809|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2	0.996872	0.0	
chr8	104108855	104109035	reg1004122.p1	6.089	+	TSC_hg19_v1_chr8_+_104033310 AK308632 BC010960 X69151 AK000064	-75625	+	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	-75678	+	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	-232550	-	TSC_hg19_v1_chr8_+_104152984 NM_001024372 NM_024812 BC035038 AK022077 BC011517 AK093819 AF371319 AF371323 DQ893318 DQ896633	44055	+	NM_001164615 BX640609 AK313789	201729	+	NM_001164616 NM_003506 TSC_hg19_v1_chr8_+_104311103 AK299341 AK296824 BC060836 BC036106 AB012911 AK304092 AK316544	202146	+	AK308632|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BC010960|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##X69151|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK000064|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001024372|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_024812|BAALC|79870|brain and acute leukemia, cytoplasmic##BC035038|BAALC|79870|brain and acute leukemia, cytoplasmic##AK022077|BAALC|79870|brain and acute leukemia, cytoplasmic##BC011517|BAALC|79870|brain and acute leukemia, cytoplasmic##AK093819|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371319|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371323|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ893318|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ896633|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_001164615|FZD6|8323|frizzled family receptor 6##BX640609|FZD6|8323|frizzled family receptor 6##AK313789|FZD6|8323|frizzled family receptor 6##NM_001164616|FZD6|8323|frizzled family receptor 6##NM_003506|FZD6|8323|frizzled family receptor 6##AK299341|FZD6|8323|frizzled family receptor 6##AK296824|FZD6|8323|frizzled family receptor 6##BC060836|FZD6|8323|frizzled family receptor 6##BC036106|FZD6|8323|frizzled family receptor 6##AB012911|FZD6|8323|frizzled family receptor 6##AK304092|FZD6|8323|frizzled family receptor 6##AK316544|FZD6|8323|frizzled family receptor 6	0.099484	0.0	
chr12	93984912	93985092	reg1002986.p2	6.087	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-19401	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-20182	+	TSC_hg19_v1_chr12_-_93964654 AK123812	-20339	-	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	86181	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	557502	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	868529	-	AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41	1.952395	0.0	denovo_WM_7:22:0.791	denovo_WM_7:46:0.304	denovo_WM_7:47:0.471
chr1	93392581	93392746	reg1007314.p1	6.087	+	NM_001252271	-49957	-	TSC_hg19_v1_chr1_+_93300359 BC012937	-92263	+	AF113210 TSC_hg19_v1_chr1_+_93297627 BC132970 BC132972 BC001882 AK222604 U14966 AB208980	-95026	+	TSC_hg19_v1_chr1_-_93399531 BX648424	6929	-	TSC_hg19_v1_chr1_-_93427020 BC070342 NM_001006605 NM_001252269 NM_001252270 NM_001252273	34375	-	TSC_hg19_v1_chr1_+_93544836 NM_001164391 NM_001164392 NM_001164393 NM_007358 AK290318 AK302900 AJ010014 AK302776 AF086908 BC010013 BC001897	152170	+	NM_001252271|FAM69A|388650|family with sequence similarity 69, member A##BC012937|RPL5|6125|ribosomal protein L5##AF113210|RPL5|6125|ribosomal protein L5##BC132970|RPL5|6125|ribosomal protein L5##BC132972|RPL5|6125|ribosomal protein L5##BC001882|RPL5|6125|ribosomal protein L5##AK222604|RPL5|6125|ribosomal protein L5##U14966|RPL5|6125|ribosomal protein L5##AB208980|RPL5|6125|ribosomal protein L5##BC070342|FAM69A|388650|family with sequence similarity 69, member A##NM_001006605|FAM69A|388650|family with sequence similarity 69, member A##NM_001252269|FAM69A|388650|family with sequence similarity 69, member A##NM_001252270|FAM69A|388650|family with sequence similarity 69, member A##NM_001252273|FAM69A|388650|family with sequence similarity 69, member A##NM_001164391|MTF2|22823|metal response element binding transcription factor 2##NM_001164392|MTF2|22823|metal response element binding transcription factor 2##NM_001164393|MTF2|22823|metal response element binding transcription factor 2##NM_007358|MTF2|22823|metal response element binding transcription factor 2##AK290318|MTF2|22823|metal response element binding transcription factor 2##AK302900|MTF2|22823|metal response element binding transcription factor 2##AJ010014|MTF2|22823|metal response element binding transcription factor 2##AK302776|MTF2|22823|metal response element binding transcription factor 2##AF086908|MTF2|22823|metal response element binding transcription factor 2##BC010013|MTF2|22823|metal response element binding transcription factor 2##BC001897|MTF2|22823|metal response element binding transcription factor 2	0.0	0.0	
chr7	71659455	71659620	reg1007956.p1	6.087	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	-1061749	+	TSC_hg19_v1_chr7_+_70231164 AK296981	-1428332	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-2594949	+	AK123862 TSC_hg19_v1_chr7_-_71801809	142241	-	NM_001017440 TSC_hg19_v1_chr7_-_71802376	142767	-	NM_031468	217822	-	AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK296981|AUTS2|26053|autism susceptibility candidate 2##BC011643|AUTS2|26053|autism susceptibility candidate 2##AK123862|CALN1|83698|calneuron 1##NM_001017440|CALN1|83698|calneuron 1##NM_031468|CALN1|83698|calneuron 1	1.848116	0.0	denovo_WM_7:-15:0.854
chr9	131397599	131397759	reg1009897.p1	6.087	+	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-8936	+	X86901 TSC_hg19_v1_chr9_+_131388179	-9501	+	TSC_hg19_v1_chr9_+_131314868 NM_001130438 NM_001195532 NM_003127 AK294753 AK300386 AK307676 BC034956 AB191262 AB209860 BC051801 J05243 BC053521 U83867	-82889	+	TSC_hg19_v1_chr9_-_131418938 BC001614	21284	-	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	21387	-	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	48325	+	AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##X86901|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001130438|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001195532|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_003127|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK294753|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK300386|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK307676|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC034956|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB191262|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB209860|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC051801|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##J05243|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC053521|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##U83867|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC001614|WDR34|89891|WD repeat domain 34##BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene	0.66102	0.945414	CTCF.p2:-4:0.945	denovo_WM_7:-47:0.661
chr18	60960509	60960604	reg1008750.p1	6.086	+	TSC_hg19_v1_chr18_-_60795898 AF401211	-164621	-	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-576248	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-576630	+	BC027258 NM_000633 NM_000657	26004	-	TSC_hg19_v1_chr18_-_60986977 X06487	26437	-	TSC_hg19_v1_chr18_-_60987309 M13994	26730	-	AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2##M13994|BCL2|596|B-cell CLL/lymphoma 2	0.0	0.0	
chr2	3606863	3607040	reg1006541.p1	6.086	+	TSC_hg19_v1_chr2_-_3605926 AF039652 NM_002936	-1009	-	TSC_hg19_v1_chr2_-_3605921 BC002973	-1030	-	AJ224117 BT019670 CR541820 DQ892597 DQ895824 TSC_hg19_v1_chr2_-_3605880 AF048994 AK096913 AF048995 AK075490	-1072	-	TSC_hg19_v1_chr2_-_3622741 AK125306	15828	-	TSC_hg19_v1_chr2_+_3622852 NM_001011 BC061901	15902	+	TSC_hg19_v1_chr2_+_3622901 BC002866	15948	+	AF039652|RNASEH1|246243|ribonuclease H1##NM_002936|RNASEH1|246243|ribonuclease H1##BC002973|RNASEH1|246243|ribonuclease H1##AJ224117|RNASEH1|246243|ribonuclease H1##BT019670|RNASEH1|246243|ribonuclease H1##CR541820|RNASEH1|246243|ribonuclease H1##DQ892597|RNASEH1|246243|ribonuclease H1##DQ895824|RNASEH1|246243|ribonuclease H1##AF048994|RNASEH1|246243|ribonuclease H1##AK096913|RNASEH1|246243|ribonuclease H1##AF048995|RNASEH1|246243|ribonuclease H1##AK075490|RNASEH1|246243|ribonuclease H1##NM_001011|RPS7|6201|ribosomal protein S7##BC061901|RPS7|6201|ribosomal protein S7##BC002866|RPS7|6201|ribosomal protein S7	0.996942	0.0	denovo_WM_7:-28:0.841
chr17	73660121	73660252	reg1004928.p1	6.084	+	BC062771 NM_001162997 AK131023	-17505	+	BC027861 NM_001162995	-30673	+	TSC_hg19_v1_chr17_+_73598147 BC033247	-61975	+	BC063440 EF560729 TSC_hg19_v1_chr17_-_73663235 BC016911 AK075084 AK304168 AB042823 AB042824 AB042825 NM_001003715 NM_001003716 NM_004259	3062	-	NM_013260 TSC_hg19_v1_chr17_+_73663441 AK095265 AK298060 BC030233 AY082382 BC007592 AF119664 BC063793 AK002202 AK310177 BC011724 AB464187 AF087869 CU675719 EU446793 BC013409 AK023157	3247	+	NM_000213 NM_001005731 X53587 TSC_hg19_v1_chr17_+_73717539	57345	+	BC062771|C17orf110|100130933|chromosome 17 open reading frame 110##NM_001162997|C17orf110|100130933|chromosome 17 open reading frame 110##AK131023|C17orf110|100130933|chromosome 17 open reading frame 110##BC027861|C17orf109|643008|chromosome 17 open reading frame 109##NM_001162995|C17orf109|643008|chromosome 17 open reading frame 109##BC033247|MYO15B|80022|myosin XVB pseudogene##BC063440|RECQL5|9400|RecQ protein-like 5##EF560729|RECQL5|9400|RecQ protein-like 5##BC016911|RECQL5|9400|RecQ protein-like 5##AK075084|RECQL5|9400|RecQ protein-like 5##AK304168|RECQL5|9400|RecQ protein-like 5##AB042823|RECQL5|9400|RecQ protein-like 5##AB042824|RECQL5|9400|RecQ protein-like 5##AB042825|RECQL5|9400|RecQ protein-like 5##NM_001003715|RECQL5|9400|RecQ protein-like 5##NM_001003716|RECQL5|9400|RecQ protein-like 5##NM_004259|RECQL5|9400|RecQ protein-like 5##NM_013260|SAP30BP|29115|SAP30 binding protein##AK095265|SAP30BP|29115|SAP30 binding protein##AK298060|SAP30BP|29115|SAP30 binding protein##BC030233|SAP30BP|29115|SAP30 binding protein##AY082382|SAP30BP|29115|SAP30 binding protein##BC007592|SAP30BP|29115|SAP30 binding protein##AF119664|SAP30BP|29115|SAP30 binding protein##BC063793|SAP30BP|29115|SAP30 binding protein##AK002202|SAP30BP|29115|SAP30 binding protein##AK310177|SAP30BP|29115|SAP30 binding protein##BC011724|SAP30BP|29115|SAP30 binding protein##AF087869|SAP30BP|29115|SAP30 binding protein##EU446793|SAP30BP|29115|SAP30 binding protein##BC013409|SAP30BP|29115|SAP30 binding protein##AK023157|SAP30BP|29115|SAP30 binding protein##NM_000213|ITGB4|3691|integrin, beta 4##NM_001005731|ITGB4|3691|integrin, beta 4##X53587|ITGB4|3691|integrin, beta 4	0.989861	0.0	
chr6	15658719	15658849	reg1006926.p1	6.084	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-409671	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-409883	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-412372	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	4393	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	4506	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	470518	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.0	0.0	
chrX	20243239	20243419	reg1004030.p2	6.084	+	BT007064 EU831819 EU831896 TSC_hg19_v1_chrX_-_20159957 BC000793 BC110421 AK312320 BC067851 L18960 NM_001412	-83453	-	AK027409 TSC_hg19_v1_chrX_-_20135017 AK303019 AK316117 AK296319 BC136379 BC089400 NM_001168465 NM_001168466 NM_152780	-108265	-	AK294788 NM_001168467	-108577	-	AB102662 L07599 AB384785 BC096301 BC096302 BC096303 NM_004586 U08316 AK313932	41401	-	TSC_hg19_v1_chrX_-_20285001 AB208933	41628	-	TSC_hg19_v1_chrX_-_20285141 AK294373	41835	-	BT007064|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##EU831819|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##EU831896|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC000793|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC110421|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##AK312320|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC067851|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##L18960|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##NM_001412|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##AK027409|MAP7D2|256714|MAP7 domain containing 2##AK303019|MAP7D2|256714|MAP7 domain containing 2##AK316117|MAP7D2|256714|MAP7 domain containing 2##AK296319|MAP7D2|256714|MAP7 domain containing 2##BC136379|MAP7D2|256714|MAP7 domain containing 2##BC089400|MAP7D2|256714|MAP7 domain containing 2##NM_001168465|MAP7D2|256714|MAP7 domain containing 2##NM_001168466|MAP7D2|256714|MAP7 domain containing 2##NM_152780|MAP7D2|256714|MAP7 domain containing 2##AK294788|MAP7D2|256714|MAP7 domain containing 2##NM_001168467|MAP7D2|256714|MAP7 domain containing 2##AB102662|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##L07599|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096301|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096302|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096303|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_004586|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##U08316|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK313932|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3	1.978446	0.0	denovo_WM_7:34:0.376	denovo_WM_7:52:0.746
chr1	27113693	27113854	reg1008173.p1	6.083	+	TSC_hg19_v1_chr1_+_27101218 AK074940 AK308363	-12485	+	AB210022 AF219114 AB051293 AF265208 TSC_hg19_v1_chr1_+_27024003	-89804	+	NM_006015 NM_139135 AF231056	-91251	+	TSC_hg19_v1_chr1_+_27114455 NM_017837 BC013568	683	+	AK000484 AK225521 AK301626 NM_001202554 AK056539	908	+	TSC_hg19_v1_chr1_+_27153178 BC066776 NM_032283	39424	+	AK074940|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK308363|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AB210022|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF219114|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF265208|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_006015|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_139135|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF231056|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_017837|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##BC013568|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK000484|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK225521|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK301626|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_001202554|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK056539|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##BC066776|ZDHHC18|84243|zinc finger, DHHC-type containing 18##NM_032283|ZDHHC18|84243|zinc finger, DHHC-type containing 18	0.956035	0.0	denovo_WM_7:-2:0.434
chr17	42092269	42092449	reg1005731.p1	6.083	+	AK314432 AK300923 BC111713 AY116538 NM_153006 AK074407	-10341	+	BC041057 NM_004160	-10523	-	X00491 NM_002722	-72543	-	CU675657 AB097008 AK130810 AK313855 TSC_hg19_v1_chr17_-_42092332 BC007438 NM_032376 AK172826 AK294237	7	-	TSC_hg19_v1_chr17_-_42143970 AK300637 AL832076	51607	-	TSC_hg19_v1_chr17_-_42144008 AK055218 BC044587 BC105288	51657	-	AK314432|NAGS|162417|N-acetylglutamate synthase##AK300923|NAGS|162417|N-acetylglutamate synthase##BC111713|NAGS|162417|N-acetylglutamate synthase##AY116538|NAGS|162417|N-acetylglutamate synthase##NM_153006|NAGS|162417|N-acetylglutamate synthase##AK074407|NAGS|162417|N-acetylglutamate synthase##BC041057|PYY|5697|peptide YY##NM_004160|PYY|5697|peptide YY##X00491|PPY|5539|pancreatic polypeptide##NM_002722|PPY|5539|pancreatic polypeptide##AB097008|TMEM101|84336|transmembrane protein 101##AK130810|TMEM101|84336|transmembrane protein 101##AK313855|TMEM101|84336|transmembrane protein 101##BC007438|TMEM101|84336|transmembrane protein 101##NM_032376|TMEM101|84336|transmembrane protein 101##AK172826|TMEM101|84336|transmembrane protein 101##AK294237|TMEM101|84336|transmembrane protein 101##AK300637|LSM12|124801|LSM12 homolog (S. cerevisiae)##AL832076|LSM12|124801|LSM12 homolog (S. cerevisiae)##AK055218|LSM12|124801|LSM12 homolog (S. cerevisiae)##BC044587|LSM12|124801|LSM12 homolog (S. cerevisiae)##BC105288|LSM12|124801|LSM12 homolog (S. cerevisiae)	0.034152	0.0	
chr14	75690792	75690972	reg1006288.p2	6.081	+	TSC_hg19_v1_chr14_-_75643341 NM_006827	-47530	-	BC001496 BC001825 TSC_hg19_v1_chr14_-_75643334	-47549	-	TSC_hg19_v1_chr14_-_75643322 AK296800 AK312384	-47562	-	NM_005252 TSC_hg19_v1_chr14_+_75745530 AK097379 AK291326 AK298659 BX647104 BC004490 S65138 DQ893444 DQ896750 AB385594 CR541785 CR542267 CU678740	54700	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	203759	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	204131	+	NM_006827|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001496|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001825|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK296800|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK312384|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##NM_005252|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK097379|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK291326|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK298659|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BX647104|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BC004490|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##S65138|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ893444|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ896750|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR541785|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR542267|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2	1.403679	0.0	denovo_WM_7:9:0.289	denovo_WM_7:25:0.798
chr16	3234119	3234236	reg1008583.p1	6.081	+	CU675598 TSC_hg19_v1_chr16_-_3191371	-42818	-	TSC_hg19_v1_chr16_+_3185119 NM_001134655 BC007287 BC116445 AK291789 AK055337 AK289834	-49018	+	TSC_hg19_v1_chr16_+_3185058 NM_004220	-49125	+	BC069335 NM_012360 Y14442	20069	+	AK315036 BC032575 AF060866 TSC_hg19_v1_chr16_-_3285159 BC025293 BC012909 AK056010 NM_001145447 NM_003454	50951	-	Y14443 BC054005 NM_001145448 NM_198088 NM_001145446 NM_198087	51230	-	NM_001134655|ZNF213|7760|zinc finger protein 213##BC007287|ZNF213|7760|zinc finger protein 213##AK291789|ZNF213|7760|zinc finger protein 213##AK055337|ZNF213|7760|zinc finger protein 213##AK289834|ZNF213|7760|zinc finger protein 213##NM_004220|ZNF213|7760|zinc finger protein 213##BC069335|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##NM_012360|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##Y14442|OR1F1|4992|olfactory receptor, family 1, subfamily F, member 1##AK315036|ZNF200|7752|zinc finger protein 200##BC032575|ZNF200|7752|zinc finger protein 200##AF060866|ZNF200|7752|zinc finger protein 200##BC025293|ZNF200|7752|zinc finger protein 200##BC012909|ZNF200|7752|zinc finger protein 200##AK056010|ZNF200|7752|zinc finger protein 200##NM_001145447|ZNF200|7752|zinc finger protein 200##NM_003454|ZNF200|7752|zinc finger protein 200##Y14443|ZNF200|7752|zinc finger protein 200##BC054005|ZNF200|7752|zinc finger protein 200##NM_001145448|ZNF200|7752|zinc finger protein 200##NM_198088|ZNF200|7752|zinc finger protein 200##NM_001145446|ZNF200|7752|zinc finger protein 200##NM_198087|ZNF200|7752|zinc finger protein 200	0.044107	0.0	
chr13	25563014	25563167	reg1009968.p1	6.079	+	TSC_hg19_v1_chr13_-_25497054 NM_018451	-66021	-	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	-66121	-	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	-224771	+	NM_030979 AL136900 AK313336 BC045608 BC027617 AF132026 DQ892103 DQ895297	107215	+	AK098343 BC032653 TSC_hg19_v1_chr13_-_25745701	182570	-	TSC_hg19_v1_chr13_-_25745778 NM_152704 NM_199138	182727	-	NM_018451|CENPJ|55835|centromere protein J##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##NM_030979|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AL136900|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AK313336|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##BC045608|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##BC027617|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AF132026|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##DQ892103|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##DQ895297|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AK098343|FAM123A|219287|family with sequence similarity 123A##BC032653|FAM123A|219287|family with sequence similarity 123A##NM_152704|FAM123A|219287|family with sequence similarity 123A##NM_199138|FAM123A|219287|family with sequence similarity 123A	0.993939	0.0	denovo_WM_7:26:0.331	denovo_WM_7:27:0.331	denovo_WM_7:28:0.331
chr6	108081181	108081247	reg1007249.p2	6.079	+	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	-269786	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	-300484	-	BC131628 NM_001080450	-645579	-	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	64302	-	AF100141 CU690382 CU690568 BC001153 TSC_hg19_v1_chr6_-_108279282 AK074835	198043	-	TSC_hg19_v1_chr6_-_108279316 AJ011779	198098	-	NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AF100141|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC001153|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK074835|SEC63|11231|SEC63 homolog (S. cerevisiae)##AJ011779|SEC63|11231|SEC63 homolog (S. cerevisiae)	0.0	0.0	
chr9	70650673	70650814	reg1003915.p5	6.079	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-160567	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-160593	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-160603	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	206149	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	267081	+	BC033073 NM_021965	321071	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.994278	0.0	denovo_WM_7:66:0.331	denovo_WM_7:67:0.331	denovo_WM_7:68:0.331
chr10	64630852	64631003	reg1007080.p1	6.078	+	AK312813 NM_001136178	-52001	-	TSC_hg19_v1_chr10_-_64576127 NM_000399 NM_001136177 NM_001136179	-54780	-	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	-54830	-	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	262104	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	262219	+	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	397988	-	AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##NM_000399|EGR2|1959|early growth response 2##NM_001136177|EGR2|1959|early growth response 2##NM_001136179|EGR2|1959|early growth response 2##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C	0.986736	0.0	denovo_WM_7:32:0.818
chr4	81796825	81796938	reg1005908.p1	6.078	+	BC034296 NM_001206997 NM_152770 AK128642 AY349359 DQ893197 DQ893198 DQ896152 DQ896153 DQ896154 DQ896534 DQ896535	-539984	+	NM_004464 NM_033143 AK312065 TSC_hg19_v1_chr4_+_81187819 AK291962 AF535149 AF171928 M37825 BC131502 BC074858 BC074859 AB016517 AB463636 AF355187	-609022	+	TSC_hg19_v1_chr4_+_81118656 NM_001099403 BC071584 AK292137 BC027929	-678227	+	M22491 NM_001201 BC096269 BC096270 BC096271 BC117514	155261	+	AB528214 D70899 NM_006259 X94612	329326	-	TSC_hg19_v1_chr4_-_82392993 BX648337 BC121003 BC121004	596102	-	BC034296|C4orf22|255119|chromosome 4 open reading frame 22##NM_001206997|C4orf22|255119|chromosome 4 open reading frame 22##NM_152770|C4orf22|255119|chromosome 4 open reading frame 22##AK128642|C4orf22|255119|chromosome 4 open reading frame 22##AY349359|C4orf22|255119|chromosome 4 open reading frame 22##DQ893197|C4orf22|255119|chromosome 4 open reading frame 22##DQ893198|C4orf22|255119|chromosome 4 open reading frame 22##DQ896152|C4orf22|255119|chromosome 4 open reading frame 22##DQ896153|C4orf22|255119|chromosome 4 open reading frame 22##DQ896154|C4orf22|255119|chromosome 4 open reading frame 22##DQ896534|C4orf22|255119|chromosome 4 open reading frame 22##DQ896535|C4orf22|255119|chromosome 4 open reading frame 22##NM_004464|FGF5|2250|fibroblast growth factor 5##NM_033143|FGF5|2250|fibroblast growth factor 5##AK312065|FGF5|2250|fibroblast growth factor 5##AK291962|FGF5|2250|fibroblast growth factor 5##AF535149|FGF5|2250|fibroblast growth factor 5##AF171928|FGF5|2250|fibroblast growth factor 5##M37825|FGF5|2250|fibroblast growth factor 5##BC131502|FGF5|2250|fibroblast growth factor 5##BC074858|FGF5|2250|fibroblast growth factor 5##BC074859|FGF5|2250|fibroblast growth factor 5##AB016517|FGF5|2250|fibroblast growth factor 5##AF355187|FGF5|2250|fibroblast growth factor 5##NM_001099403|PRDM8|56978|PR domain containing 8##BC071584|PRDM8|56978|PR domain containing 8##AK292137|PRDM8|56978|PR domain containing 8##BC027929|PRDM8|56978|PR domain containing 8##M22491|BMP3|651|bone morphogenetic protein 3##NM_001201|BMP3|651|bone morphogenetic protein 3##BC096269|BMP3|651|bone morphogenetic protein 3##BC096270|BMP3|651|bone morphogenetic protein 3##BC096271|BMP3|651|bone morphogenetic protein 3##BC117514|BMP3|651|bone morphogenetic protein 3##D70899|PRKG2|5593|protein kinase, cGMP-dependent, type II##NM_006259|PRKG2|5593|protein kinase, cGMP-dependent, type II##X94612|PRKG2|5593|protein kinase, cGMP-dependent, type II##BX648337|RASGEF1B|153020|RasGEF domain family, member 1B##BC121003|RASGEF1B|153020|RasGEF domain family, member 1B##BC121004|RASGEF1B|153020|RasGEF domain family, member 1B	0.990819	0.0	denovo_WM_7:-51:0.237	denovo_WM_7:-52:0.237	denovo_WM_7:-53:0.237	denovo_WM_7:-54:0.237
chr2	27008792	27008935	reg1006721.p2	6.077	+	TSC_hg19_v1_chr2_+_26987155 AK000562 NM_017877 BC028081 BC035519 BX647807 AK075164 AK296996 BC011013 AK299598 AY358820 AK222929 BX648017 CU688388 CR457243	-21694	+	TSC_hg19_v1_chr2_+_26915710 BC140701 NM_002246 AF006823 AF065163	-93220	+	BC140923 NM_001029881 BC127685 BC127684	-144641	-	NM_001809 NM_001042426 TSC_hg19_v1_chr2_+_27008894	29	+	TSC_hg19_v1_chr2_+_27008924 U14518 BC000881 BC002703 CU674442 BT007246	125	+	AF264015 NM_020134 TSC_hg19_v1_chr2_+_27070999 BC002874 NM_001253723 NM_001253724	62263	+	AK000562|C2orf18|54978|chromosome 2 open reading frame 18##NM_017877|C2orf18|54978|chromosome 2 open reading frame 18##BC028081|C2orf18|54978|chromosome 2 open reading frame 18##BC035519|C2orf18|54978|chromosome 2 open reading frame 18##BX647807|C2orf18|54978|chromosome 2 open reading frame 18##AK075164|C2orf18|54978|chromosome 2 open reading frame 18##AK296996|C2orf18|54978|chromosome 2 open reading frame 18##BC011013|CENPA|1058|centromere protein A##AK299598|C2orf18|54978|chromosome 2 open reading frame 18##AY358820|C2orf18|54978|chromosome 2 open reading frame 18##AK222929|C2orf18|54978|chromosome 2 open reading frame 18##BX648017|C2orf18|54978|chromosome 2 open reading frame 18##CR457243|C2orf18|54978|chromosome 2 open reading frame 18##BC140701|KCNK3|3777|potassium channel, subfamily K, member 3##NM_002246|KCNK3|3777|potassium channel, subfamily K, member 3##AF006823|KCNK3|3777|potassium channel, subfamily K, member 3##AF065163|KCNK3|3777|potassium channel, subfamily K, member 3##BC140923|CIB4|130106|calcium and integrin binding family member 4##NM_001029881|CIB4|130106|calcium and integrin binding family member 4##BC127685|CIB4|130106|calcium and integrin binding family member 4##BC127684|CIB4|130106|calcium and integrin binding family member 4##NM_001809|CENPA|1058|centromere protein A##NM_001042426|CENPA|1058|centromere protein A##U14518|CENPA|1058|centromere protein A##BC000881|CENPA|1058|centromere protein A##BC002703|CENPA|1058|centromere protein A##BT007246|CENPA|1058|centromere protein A##AF264015|DPYSL5|56896|dihydropyrimidinase-like 5##NM_020134|DPYSL5|56896|dihydropyrimidinase-like 5##BC002874|DPYSL5|56896|dihydropyrimidinase-like 5##NM_001253723|DPYSL5|56896|dihydropyrimidinase-like 5##NM_001253724|DPYSL5|56896|dihydropyrimidinase-like 5	0.0	0.0	
chr12	54833551	54833687	reg1007733.p1	6.076	+	TSC_hg19_v1_chr12_-_54813025 BC008786 AK312414 NM_002205	-20584	-	TSC_hg19_v1_chr12_-_54813005 AK304696 X06256	-20615	-	M13918 TSC_hg19_v1_chr12_-_54813000 CU679109 DQ892690 EU176722 AB385038 AK291570 AK311051	-20651	-	BC021179 TSC_hg19_v1_chr12_-_54867359	33733	-	TSC_hg19_v1_chr12_-_54867387 BC105587 AK098819 NM_144594	33765	-	TSC_hg19_v1_chr12_+_54891516 NM_005337	57886	+	BC008786|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##AK312414|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##NM_002205|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##AK304696|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##X06256|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##M13918|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##DQ892690|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##EU176722|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##AK291570|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##AK311051|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##BC021179|GTSF1|121355|gametocyte specific factor 1##BC105587|GTSF1|121355|gametocyte specific factor 1##AK098819|GTSF1|121355|gametocyte specific factor 1##NM_144594|GTSF1|121355|gametocyte specific factor 1##NM_005337|NCKAP1L|3071|NCK-associated protein 1-like	0.0	0.788199	CTCF.p2:-12:0.788
chr16	89558073	89558219	reg1006281.p1	6.076	+	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	-1215	-	AK293862 NM_001242885	-170606	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-207190	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	16668	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	68919	+	TSC_hg19_v1_chr16_+_89627089 BC093063 AK026501 AK093246 AK130964 AK290893 AK294655 AK308545 BC066320 D28432 X64707 AK025405 AK127579 AK130963 AK297198 BC007345 BC004954 BC006179 BC063378 BC007805 BC013078 BC014167 BC027463 BC010994 BC000851 BC020804 NM_033251 BC007563	68961	+	BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13##BC093063|RPL13|6137|ribosomal protein L13##AK026501|RPL13|6137|ribosomal protein L13##AK130964|RPL13|6137|ribosomal protein L13##AK290893|RPL13|6137|ribosomal protein L13##AK294655|RPL13|6137|ribosomal protein L13##AK308545|RPL13|6137|ribosomal protein L13##BC066320|RPL13|6137|ribosomal protein L13##D28432|RPL13|6137|ribosomal protein L13##X64707|RPL13|6137|ribosomal protein L13##AK025405|RPL13|6137|ribosomal protein L13##AK127579|RPL13|6137|ribosomal protein L13##AK130963|RPL13|6137|ribosomal protein L13##AK297198|RPL13|6137|ribosomal protein L13##BC007345|RPL13|6137|ribosomal protein L13##BC004954|RPL13|6137|ribosomal protein L13##BC006179|RPL13|6137|ribosomal protein L13##BC063378|RPL13|6137|ribosomal protein L13##BC007805|RPL13|6137|ribosomal protein L13##BC013078|RPL13|6137|ribosomal protein L13##BC014167|RPL13|6137|ribosomal protein L13##BC027463|RPL13|6137|ribosomal protein L13##BC010994|RPL13|6137|ribosomal protein L13##BC000851|RPL13|6137|ribosomal protein L13##BC020804|RPL13|6137|ribosomal protein L13##NM_033251|RPL13|6137|ribosomal protein L13##BC007563|RPL13|6137|ribosomal protein L13	0.990304	0.0	denovo_WM_7:30:0.237	denovo_WM_7:31:0.237	denovo_WM_7:32:0.237	denovo_WM_7:33:0.237
chr4	16230334	16230467	reg1006486.p2	6.076	+	TSC_hg19_v1_chr4_+_16228615 AK093550 AX748197 BC010030	-1764	+	TSC_hg19_v1_chr4_+_16228285 AK096972 BC132927	-2105	+	TSC_hg19_v1_chr4_-_16228103 BC066899 NM_153365	-2263	-	AK300119 AB463834 DQ891981 DQ895171 AK312881 TSC_hg19_v1_chr4_-_16900210 AF068651 AF047337 AF064492 AF064493 BC034019	669726	-	AK226029 TSC_hg19_v1_chr4_-_16900258	669859	-	AF052389 TSC_hg19_v1_chr4_-_16900372 NM_001130834 NM_001290	669985	-	AK093550|FLJ39653|202020|uncharacterized FLJ39653##BC010030|FLJ39653|202020|uncharacterized FLJ39653##AK096972|FLJ39653|202020|uncharacterized FLJ39653##BC132927|FLJ39653|202020|uncharacterized FLJ39653##BC066899|TAPT1|202018|transmembrane anterior posterior transformation 1##NM_153365|TAPT1|202018|transmembrane anterior posterior transformation 1##AK300119|LDB2|9079|LIM domain binding 2##DQ891981|LDB2|9079|LIM domain binding 2##DQ895171|LDB2|9079|LIM domain binding 2##AK312881|LDB2|9079|LIM domain binding 2##AF068651|LDB2|9079|LIM domain binding 2##AF047337|LDB2|9079|LIM domain binding 2##AF064492|LDB2|9079|LIM domain binding 2##AF064493|LDB2|9079|LIM domain binding 2##BC034019|LDB2|9079|LIM domain binding 2##AK226029|LDB2|9079|LIM domain binding 2##AF052389|LDB2|9079|LIM domain binding 2##NM_001130834|LDB2|9079|LIM domain binding 2##NM_001290|LDB2|9079|LIM domain binding 2	3.97173	0.0	denovo_WM_7:-33:0.310	denovo_WM_7:-34:0.310	denovo_WM_7:-35:0.310	denovo_WM_7:-73:0.702	denovo_WM_7:-88:0.236	denovo_WM_7:-92:0.244	denovo_WM_7:-106:0.230	denovo_WM_7:-107:0.473
chr16	67784550	67784699	reg1007001.p2	6.075	+	TSC_hg19_v1_chr16_-_67753220 AK074382 BC107585 BC000757 AK307280 AK225997 NM_001243650 NM_030819	-31395	-	TSC_hg19_v1_chr16_+_67700716 NM_001012984 AK123796 BC032064 BC041612 BC064498 BC082249	-83903	+	TSC_hg19_v1_chr16_-_67700634 BC008284 AL136786 NM_032140	-84009	-	TSC_hg19_v1_chr16_-_67840456 AB384605 AB040897 AK055727 AK298806 AK304030 BC099917 AK295171 AK295530	55780	-	TSC_hg19_v1_chr16_-_67840464 BC121176 BC121177 AY337313 NM_020850	55885	-	AF132730 AK303841 BC050693 AK302300 AK301920 NM_018430 BC111018 BC035320 AK027245	56395	+	AK074382|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC107585|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC000757|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK307280|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK225997|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_001243650|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_030819|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_001012984|C16orf86|388284|chromosome 16 open reading frame 86##AK123796|C16orf86|388284|chromosome 16 open reading frame 86##BC032064|C16orf86|388284|chromosome 16 open reading frame 86##BC041612|C16orf86|388284|chromosome 16 open reading frame 86##BC064498|C16orf86|388284|chromosome 16 open reading frame 86##BC082249|C16orf86|388284|chromosome 16 open reading frame 86##BC008284|C16orf48|84080|chromosome 16 open reading frame 48##AL136786|C16orf48|84080|chromosome 16 open reading frame 48##NM_032140|C16orf48|84080|chromosome 16 open reading frame 48##AB040897|RANBP10|57610|RAN binding protein 10##AK055727|RANBP10|57610|RAN binding protein 10##AK298806|RANBP10|57610|RAN binding protein 10##AK304030|RANBP10|57610|RAN binding protein 10##BC099917|RANBP10|57610|RAN binding protein 10##AK295171|RANBP10|57610|RAN binding protein 10##AK295530|RANBP10|57610|RAN binding protein 10##BC121176|RANBP10|57610|RAN binding protein 10##BC121177|RANBP10|57610|RAN binding protein 10##AY337313|RANBP10|57610|RAN binding protein 10##NM_020850|RANBP10|57610|RAN binding protein 10##AF132730|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK303841|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC050693|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK302300|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK301920|TSNAXIP1|55815|translin-associated factor X interacting protein 1##NM_018430|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC111018|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC035320|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK027245|TSNAXIP1|55815|translin-associated factor X interacting protein 1	1.020117	0.0	
chr1	11035603	11035732	reg1006552.p1	6.074	+	DQ217660 AK092289 AX747454 NM_001079843 NM_017766	-178962	-	TSC_hg19_v1_chr1_-_10754567 AK311700 AK293839	-281116	-	TSC_hg19_v1_chr1_+_10535017 AK293684 AK307416 NM_004565 AK298136 AK002194 BC006327 AK310726 BC017848 BC054017 AB017546 AF045186 AK313046 AB527589 CR450321 CR542083 CU675355 DQ892775 DQ895905	-500656	+	NM_001170754	6426	-	NM_007375 TSC_hg19_v1_chr1_+_11072715 AK299454 AK312416 BC001487 BC095435 BC071657 AL050265 AK222754 AK295920	37043	+	Y18282 TSC_hg19_v1_chr1_-_11107270 Y18283 X98400 Y09926 BC052299 BC067359 BC080556 Y18281 Y18284 AB008047	71552	-	DQ217660|CASZ1|54897|castor zinc finger 1##AK092289|CASZ1|54897|castor zinc finger 1##NM_001079843|CASZ1|54897|castor zinc finger 1##NM_017766|CASZ1|54897|castor zinc finger 1##AK311700|CASZ1|54897|castor zinc finger 1##AK293839|CASZ1|54897|castor zinc finger 1##AK293684|PEX14|5195|peroxisomal biogenesis factor 14##AK307416|PEX14|5195|peroxisomal biogenesis factor 14##NM_004565|PEX14|5195|peroxisomal biogenesis factor 14##AK298136|PEX14|5195|peroxisomal biogenesis factor 14##AK002194|PEX14|5195|peroxisomal biogenesis factor 14##BC006327|PEX14|5195|peroxisomal biogenesis factor 14##AK310726|PEX14|5195|peroxisomal biogenesis factor 14##BC017848|PEX14|5195|peroxisomal biogenesis factor 14##BC054017|PEX14|5195|peroxisomal biogenesis factor 14##AB017546|PEX14|5195|peroxisomal biogenesis factor 14##AF045186|PEX14|5195|peroxisomal biogenesis factor 14##AK313046|PEX14|5195|peroxisomal biogenesis factor 14##CR450321|PEX14|5195|peroxisomal biogenesis factor 14##CR542083|PEX14|5195|peroxisomal biogenesis factor 14##DQ892775|PEX14|5195|peroxisomal biogenesis factor 14##DQ895905|PEX14|5195|peroxisomal biogenesis factor 14##NM_001170754|C1orf127|148345|chromosome 1 open reading frame 127##NM_007375|TARDBP|23435|TAR DNA binding protein##AK299454|TARDBP|23435|TAR DNA binding protein##AK312416|TARDBP|23435|TAR DNA binding protein##BC001487|TARDBP|23435|TAR DNA binding protein##BC095435|TARDBP|23435|TAR DNA binding protein##BC071657|TARDBP|23435|TAR DNA binding protein##AL050265|TARDBP|23435|TAR DNA binding protein##AK222754|TARDBP|23435|TAR DNA binding protein##AK295920|TARDBP|23435|TAR DNA binding protein##Y18282|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18283|MASP2|10747|mannan-binding lectin serine peptidase 2##X98400|MASP2|10747|mannan-binding lectin serine peptidase 2##Y09926|MASP2|10747|mannan-binding lectin serine peptidase 2##BC052299|MASP2|10747|mannan-binding lectin serine peptidase 2##BC067359|MASP2|10747|mannan-binding lectin serine peptidase 2##BC080556|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18281|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18284|MASP2|10747|mannan-binding lectin serine peptidase 2##AB008047|MASP2|10747|mannan-binding lectin serine peptidase 2	0.994503	0.0	denovo_WM_7:-11:0.779
chr11	70489690	70489830	reg1007142.p1	6.074	+	TSC_hg19_v1_chr11_+_70244653 NM_001184740 NM_005231 NM_138565 AK222613 AK291097 BC033889 BC008799 M98343	-245107	+	TSC_hg19_v1_chr11_-_70244476 AK125463	-245245	-	D49354 TSC_hg19_v1_chr11_+_70194450	-295339	+	AF141901 BC114484 BC113876 TSC_hg19_v1_chr11_-_70507895	18107	-	TSC_hg19_v1_chr11_-_70507919 AB208027 NM_133266	18158	-	BC093885 BC112097 BC143389 TSC_hg19_v1_chr11_-_70507947	18190	-	NM_001184740|CTTN|2017|cortactin##NM_005231|CTTN|2017|cortactin##NM_138565|CTTN|2017|cortactin##AK222613|CTTN|2017|cortactin##AK291097|CTTN|2017|cortactin##BC033889|CTTN|2017|cortactin##BC008799|CTTN|2017|cortactin##M98343|CTTN|2017|cortactin##D49354|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##AF141901|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC114484|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC113876|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##AB208027|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##NM_133266|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC093885|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC112097|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC143389|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2	0.999706	0.015591	
chr16	48091176	48091299	reg1005394.p2	6.074	+	TSC_hg19_v1_chr16_+_47495241 X84908 CR936710 BC033657 AK309226	-595998	+	TSC_hg19_v1_chr16_+_47495206 NM_000293 NM_001031835 AK298588	-596049	+	TSC_hg19_v1_chr16_-_47495158 AF212247 AK301908	-596080	-	AY196326 AY040220 NM_033226	89383	-	AY040219 NM_033151	174944	-	AF367202 AF411579 NM_032583 NM_145186	177850	-	X84908|PHKB|5257|phosphorylase kinase, beta##CR936710|PHKB|5257|phosphorylase kinase, beta##BC033657|PHKB|5257|phosphorylase kinase, beta##AK309226|PHKB|5257|phosphorylase kinase, beta##NM_000293|PHKB|5257|phosphorylase kinase, beta##NM_001031835|PHKB|5257|phosphorylase kinase, beta##AF212247|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK301908|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AY196326|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040220|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##NM_033226|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040219|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_033151|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11	2.590052	0.0	denovo_WM_7:1:0.247	denovo_WM_7:2:0.247	denovo_WM_7:3:0.247	denovo_WM_7:4:0.247	denovo_WM_7:83:0.549	denovo_WM_7:107:0.716
chr1	83951140	83951289	reg1006048.p1	6.073	+	AF104266 AF104938 AF104939 NM_012302	-1685133	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-2179287	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-4478787	-	AK097722 TSC_hg19_v1_chr1_-_84326308	375054	-	TSC_hg19_v1_chr1_-_84326677 BC036594	375462	-	AK126792 BC048970 BC032829 TSC_hg19_v1_chr1_-_84464848 BC060878 BC028350 NM_024686	513582	-	AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK126792|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC048970|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC032829|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC060878|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC028350|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##NM_024686|TTLL7|79739|tubulin tyrosine ligase-like family, member 7	0.992495	0.0	denovo_WM_7:29:0.992
chr19	14394615	14394787	reg1007454.p2	6.073	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-77653	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-133901	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-146710	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	97348	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	97554	+	TSC_hg19_v1_chr19_-_14529877 AK301847	135188	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.087408	0.0	
chr2	227637531	227637675	reg1005178.p2	6.073	+	NM_020864 BC131727 AB040919	-1371958	+	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	-1730255	-	TSC_hg19_v1_chr2_-_225811768 EU236710	-1825849	-	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	25876	-	TSC_hg19_v1_chr2_-_227664534 S62539	26896	-	NM_001167608 NM_032276 TSC_hg19_v1_chr2_+_227700769 BC030293 AX775823 BC111056 AK074258 AX775825	63127	+	NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##EU236710|DOCK10|55619|dedicator of cytokinesis 10##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1##S62539|IRS1|3667|insulin receptor substrate 1##NM_001167608|RHBDD1|84236|rhomboid domain containing 1##NM_032276|RHBDD1|84236|rhomboid domain containing 1##BC111056|RHBDD1|84236|rhomboid domain containing 1##AK074258|RHBDD1|84236|rhomboid domain containing 1	0.0	0.0	
chr2	70322420	70322558	reg1007710.p1	6.073	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-7491	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-7572	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-7662	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	95632	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	153230	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	162761	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.0	0.0	
chr12	11803389	11803560	reg1008046.p2	6.072	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	-488	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	-700	+	TSC_hg19_v1_chr12_+_11802659 AK289441	-801	+	AK292995 TSC_hg19_v1_chr12_+_12223872 BC025778 NM_138723 AK223415	420409	+	AF281254 AF281255 NM_030766 NM_138722	420927	+	AK074543 TSC_hg19_v1_chr12_-_12291395	487910	-	U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##AK289441|ETV6|2120|ets variant 6##AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281254|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281255|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_030766|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138722|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK074543|LRP6|4040|low density lipoprotein receptor-related protein 6	2.966886	0.0	denovo_WM_7:-32:0.442	denovo_WM_7:-51:0.793	denovo_WM_7:88:0.886
chr19	40410399	40410513	reg1005469.p1	6.072	+	AK296950 TSC_hg19_v1_chr19_-_40337020 NM_001436	-73421	-	TSC_hg19_v1_chr19_-_40337007 BC019260 AK308649	-73450	-	AB463635 M59849 TSC_hg19_v1_chr19_-_40336992	-73488	-	D84239 NM_003890	30076	-	TSC_hg19_v1_chr19_+_40477090 AF020736 AK313183 NM_006503 NM_153001 BC010396 AK310135 AF038965 BC000343 BC014488 BC018811 U27515 AK290285 DQ891875 DQ894876 BT007232 CU679695	66614	+	NM_178544 AK122968 AK292528 BC045649	92529	+	AK296950|FBL|2091|fibrillarin##NM_001436|FBL|2091|fibrillarin##BC019260|FBL|2091|fibrillarin##AK308649|FBL|2091|fibrillarin##M59849|FBL|2091|fibrillarin##D84239|FCGBP|8857|Fc fragment of IgG binding protein##NM_003890|FCGBP|8857|Fc fragment of IgG binding protein##AF020736|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK313183|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_006503|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_153001|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC010396|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK310135|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AF038965|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC000343|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC014488|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC018811|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##U27515|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK290285|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ891875|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ894876|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BT007232|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546	0.999607	0.0	
chr5	108101583	108101682	reg1005357.p1	6.072	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-16960	+	AK293376 J03358 NM_005246 AK296874	-18070	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-37652	-	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	643989	-	TSC_hg19_v1_chr5_+_109025072 BC031659	923432	+	TSC_hg19_v1_chr5_+_109025096 BC111062	923465	+	AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.997179	0.0	denovo_WM_7:9:0.976
chr15	62352787	62352898	reg1004985.p1	6.070	+	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	-228	-	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	-831345	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	-831418	-	NM_207322 AF504646	6346	+	NM_001007595	104639	-	TSC_hg19_v1_chr15_+_62682748 AB621808	329876	+	AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##NM_207322|C2CD4A|145741|C2 calcium-dependent domain containing 4A##AF504646|C2CD4A|145741|C2 calcium-dependent domain containing 4A##NM_001007595|C2CD4B|388125|C2 calcium-dependent domain containing 4B##AB621808|TLN2|83660|talin 2	0.0	0.044623	
chr15	64170208	64170388	reg1007177.p1	6.070	+	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	-44158	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	-44178	-	TSC_hg19_v1_chr15_-_64126081 U50078	-44214	-	AB018001 AF052941 GU056176 NM_014326 TSC_hg19_v1_chr15_-_64338641 AK310967	168312	-	TSC_hg19_v1_chr15_-_64386038 AK304202 AK026528 BC008865 AK312171 NM_001014812 NM_032231	215799	-	NM_001242933 NM_003099 NM_148955 TSC_hg19_v1_chr15_+_64388198 AB209013 AK128179 AK222561 AK291752	217842	+	AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AB018001|DAPK2|23604|death-associated protein kinase 2##AF052941|DAPK2|23604|death-associated protein kinase 2##GU056176|DAPK2|23604|death-associated protein kinase 2##NM_014326|DAPK2|23604|death-associated protein kinase 2##AK310967|DAPK2|23604|death-associated protein kinase 2##AK304202|FAM96A|84191|family with sequence similarity 96, member A##BC008865|FAM96A|84191|family with sequence similarity 96, member A##AK312171|FAM96A|84191|family with sequence similarity 96, member A##NM_001014812|FAM96A|84191|family with sequence similarity 96, member A##NM_032231|FAM96A|84191|family with sequence similarity 96, member A##NM_001242933|SNX1|6642|sorting nexin 1##NM_003099|SNX1|6642|sorting nexin 1##NM_148955|SNX1|6642|sorting nexin 1##AB209013|SNX1|6642|sorting nexin 1##AK128179|SNX1|6642|sorting nexin 1##AK222561|SNX1|6642|sorting nexin 1##AK291752|SNX1|6642|sorting nexin 1	1.998164	0.0	denovo_WM_7:89:0.366	denovo_WM_7:90:0.274	denovo_WM_7:106:0.291	denovo_WM_7:107:0.382
chr3	16309727	16309829	reg1005326.p1	6.070	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-3070	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-3389	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-93584	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	245240	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	245446	-	BX648638 AK303026 NM_001190811	336492	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	1.993989	0.996567	CTCF.p2:-19:0.997	denovo_WM_7:50:0.364	denovo_WM_7:51:0.273	denovo_WM_7:67:0.291	denovo_WM_7:68:0.382
chr16	30482540	30482665	reg1002116.p2	6.069	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-25373	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-25420	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-41263	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	1398	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	1470	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	1531	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.0	0.0	
chr1	65534320	65534469	reg1009556.p1	6.069	+	TSC_hg19_v1_chr1_-_65432203 BC111401	-102166	-	TSC_hg19_v1_chr1_-_65432181 BC062431 BC009079 NM_002227	-102380	-	TSC_hg19_v1_chr1_+_65210850 AB046799 NM_018211 AB463230	-323595	+	TSC_hg19_v1_chr1_+_65613263 NM_203464 BC146653 BC016180 AK309057 BC066944 NM_001005353	78967	+	TSC_hg19_v1_chr1_+_65613835 NM_013410 AK025926 AK313611 X60673	79454	+	TSC_hg19_v1_chr1_+_65613971 BC040224 BC136886 BC136887 BC148270 CR456830 CU688216 DQ892294 DQ895494	79636	+	BC111401|JAK1|3716|Janus kinase 1##BC062431|JAK1|3716|Janus kinase 1##BC009079|JAK1|3716|Janus kinase 1##NM_002227|JAK1|3716|Janus kinase 1##AB046799|RAVER2|55225|ribonucleoprotein, PTB-binding 2##NM_018211|RAVER2|55225|ribonucleoprotein, PTB-binding 2##NM_203464|AK4|205|adenylate kinase 4##BC146653|AK4|205|adenylate kinase 4##BC016180|AK4|205|adenylate kinase 4##AK309057|AK4|205|adenylate kinase 4##BC066944|AK4|205|adenylate kinase 4##NM_001005353|AK4|205|adenylate kinase 4##NM_013410|AK4|205|adenylate kinase 4##AK025926|AK4|205|adenylate kinase 4##AK313611|AK4|205|adenylate kinase 4##X60673|AK4|205|adenylate kinase 4##BC040224|AK4|205|adenylate kinase 4##BC136886|AK4|205|adenylate kinase 4##BC136887|AK4|205|adenylate kinase 4##BC148270|AK4|205|adenylate kinase 4##CR456830|AK4|205|adenylate kinase 4##DQ892294|AK4|205|adenylate kinase 4##DQ895494|AK4|205|adenylate kinase 4	0.991268	0.0	denovo_WM_7:10:0.213	denovo_WM_7:11:0.327	denovo_WM_7:12:0.326
chr1	6948844	6949000	reg1006116.p1	6.069	+	TSC_hg19_v1_chr1_+_6845513 AB020640 BC151835 NM_001195563 NM_001242701 NM_015215 BC116457	-103431	+	TSC_hg19_v1_chr1_-_6761903 NM_018198	-186991	-	AF306695 TSC_hg19_v1_chr1_-_6761883	-187040	-	TSC_hg19_v1_chr1_+_7831355 BC005941 NM_004781 AK316558 BC007050 BC003570 U64520	882454	+	BC026102 TSC_hg19_v1_chr1_+_7844403 AK308303	895487	+	AB047686 BC146781 AL157954 NM_016831 BC144137 AK307760 AY493418 AB463163	895903	+	AB020640|CAMTA1|23261|calmodulin binding transcription activator 1##BC151835|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001195563|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001242701|CAMTA1|23261|calmodulin binding transcription activator 1##NM_015215|CAMTA1|23261|calmodulin binding transcription activator 1##BC116457|CAMTA1|23261|calmodulin binding transcription activator 1##NM_018198|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AF306695|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC005941|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##NM_004781|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##AK316558|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC007050|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC003570|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##U64520|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC026102|PER3|8863|period homolog 3 (Drosophila)##AK308303|PER3|8863|period homolog 3 (Drosophila)##AB047686|PER3|8863|period homolog 3 (Drosophila)##BC146781|PER3|8863|period homolog 3 (Drosophila)##AL157954|PER3|8863|period homolog 3 (Drosophila)##NM_016831|PER3|8863|period homolog 3 (Drosophila)##BC144137|PER3|8863|period homolog 3 (Drosophila)##AK307760|PER3|8863|period homolog 3 (Drosophila)##AY493418|PER3|8863|period homolog 3 (Drosophila)	1.968669	0.0	denovo_WM_7:-30:0.973	denovo_WM_7:-45:0.972
chr10	3023399	3023547	reg1006866.p2	6.068	+	AF034837 NM_018702	-1243804	-	TSC_hg19_v1_chr10_+_1102822 AK292591	-1920647	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-1920704	+	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	86274	+	AK092597 AX747622 NM_001242339	87345	+	BC021698 TSC_hg19_v1_chr10_+_3151628	128139	+	AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet##BC021698|PFKP|5214|phosphofructokinase, platelet	0.993561	0.0	denovo_WM_7:34:0.308	denovo_WM_7:35:0.308	denovo_WM_7:36:0.308
chr7	112404231	112404387	reg1006760.p1	6.068	+	NM_001134468 BC031976 AK096894 NM_182597	-283323	+	NM_001197079	-312197	+	TSC_hg19_v1_chr7_+_112090514 NM_001550 AK225222 BC001272 Y10313 AK297509 AB527574 BT019889 BT019890 CU674634	-313706	+	AK293311 TSC_hg19_v1_chr7_-_112430447 AK314460 AL136626 AK025482 NM_022484	26134	-	AL834437 AK299901 TSC_hg19_v1_chr7_-_112579931 BC114615 AK056380 NM_152556	175521	-	AK297464 AK312587 NM_001146266 AL161959 NM_001146267 TSC_hg19_v1_chr7_-_112726667	322186	-	NM_001134468|C7orf53|286006|chromosome 7 open reading frame 53##BC031976|C7orf53|286006|chromosome 7 open reading frame 53##AK096894|C7orf53|286006|chromosome 7 open reading frame 53##NM_182597|C7orf53|286006|chromosome 7 open reading frame 53##NM_001197079|IFRD1|3475|interferon-related developmental regulator 1##NM_001550|IFRD1|3475|interferon-related developmental regulator 1##AK225222|IFRD1|3475|interferon-related developmental regulator 1##BC001272|IFRD1|3475|interferon-related developmental regulator 1##AK297509|IFRD1|3475|interferon-related developmental regulator 1##BT019889|IFRD1|3475|interferon-related developmental regulator 1##BT019890|IFRD1|3475|interferon-related developmental regulator 1##AK293311|TMEM168|64418|transmembrane protein 168##AK314460|TMEM168|64418|transmembrane protein 168##AL136626|TMEM168|64418|transmembrane protein 168##AK025482|TMEM168|64418|transmembrane protein 168##NM_022484|TMEM168|64418|transmembrane protein 168##AL834437|C7orf60|154743|chromosome 7 open reading frame 60##AK299901|C7orf60|154743|chromosome 7 open reading frame 60##BC114615|C7orf60|154743|chromosome 7 open reading frame 60##AK056380|C7orf60|154743|chromosome 7 open reading frame 60##NM_152556|C7orf60|154743|chromosome 7 open reading frame 60##AK297464|GPR85|54329|G protein-coupled receptor 85##AK312587|GPR85|54329|G protein-coupled receptor 85##NM_001146266|GPR85|54329|G protein-coupled receptor 85##AL161959|GPR85|54329|G protein-coupled receptor 85##NM_001146267|GPR85|54329|G protein-coupled receptor 85	0.791131	0.0	denovo_WM_7:-85:0.429	denovo_WM_7:-86:0.256
chr8	39545633	39545761	reg1009748.p1	6.068	+	NM_001190956 NM_014237 AK313961 AY358321 BC070279 BC034624 CU687082 AJ133004 BC121045 BC121046 AK225744	-103580	+	NM_145004 AK300148 AY172952 AY358739 AK313864 BC026169 BC030698 BC034975 AK122608 BC028702 BC030014 BC026085 DQ890910 DQ894061 CU693126	-580527	+	TSC_hg19_v1_chr8_+_38854524 BC126406 BC143923 BC143924 AF495383	-691151	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	150043	-	NM_002164 AK313259 BC027882 X17668 AY221100 CU693308 JF772862	225687	+	AK128691 NM_194294	246776	+	NM_001190956|ADAM18|8749|ADAM metallopeptidase domain 18##NM_014237|ADAM18|8749|ADAM metallopeptidase domain 18##AK313961|ADAM18|8749|ADAM metallopeptidase domain 18##AY358321|ADAM18|8749|ADAM metallopeptidase domain 18##BC070279|ADAM18|8749|ADAM metallopeptidase domain 18##BC034624|ADAM18|8749|ADAM metallopeptidase domain 18##AJ133004|ADAM18|8749|ADAM metallopeptidase domain 18##BC121045|ADAM18|8749|ADAM metallopeptidase domain 18##BC121046|ADAM18|8749|ADAM metallopeptidase domain 18##AK225744|ADAM18|8749|ADAM metallopeptidase domain 18##NM_145004|ADAM32|203102|ADAM metallopeptidase domain 32##AK300148|ADAM32|203102|ADAM metallopeptidase domain 32##AY172952|ADAM32|203102|ADAM metallopeptidase domain 32##AY358739|ADAM32|203102|ADAM metallopeptidase domain 32##AK313864|ADAM32|203102|ADAM metallopeptidase domain 32##BC026169|ADAM32|203102|ADAM metallopeptidase domain 32##BC030698|ADAM32|203102|ADAM metallopeptidase domain 32##BC034975|ADAM32|203102|ADAM metallopeptidase domain 32##AK122608|ADAM32|203102|ADAM metallopeptidase domain 32##BC028702|ADAM32|203102|ADAM metallopeptidase domain 32##BC030014|ADAM32|203102|ADAM metallopeptidase domain 32##BC026085|ADAM32|203102|ADAM metallopeptidase domain 32##DQ890910|ADAM32|203102|ADAM metallopeptidase domain 32##DQ894061|ADAM32|203102|ADAM metallopeptidase domain 32##BC126406|ADAM9|8754|ADAM metallopeptidase domain 9##BC143923|ADAM9|8754|ADAM metallopeptidase domain 9##BC143924|ADAM9|8754|ADAM metallopeptidase domain 9##AF495383|ADAM9|8754|ADAM metallopeptidase domain 9##X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2##NM_002164|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK313259|IDO1|3620|indoleamine 2,3-dioxygenase 1##BC027882|IDO1|3620|indoleamine 2,3-dioxygenase 1##X17668|IDO1|3620|indoleamine 2,3-dioxygenase 1##AY221100|IDO1|3620|indoleamine 2,3-dioxygenase 1##JF772862|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2	0.12678	0.0	
chr14	23369566	23369662	reg1006256.p2	6.066	+	AK299238 AK096283 NM_173527 BC035663	-17179	+	TSC_hg19_v1_chr14_+_23341364 AL834518 AK291030 BC113714 BC113716	-28192	+	TSC_hg19_v1_chr14_+_23340981 NM_014045 AY358399 BX161500	-28593	+	TSC_hg19_v1_chr14_-_23388350 BX161440 BC024208 BC106012 AL834198 AF087905 AK001344 AF275678 AK125593 AK225792 AK295448 AK303668 AK308055 AK315620	18712	-	TSC_hg19_v1_chr14_-_23388359 BC002566	18753	-	TSC_hg19_v1_chr14_-_23388390 NM_001077351 NM_001077352 NM_018107	18778	-	AK299238|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##AK096283|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##NM_173527|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##BC035663|REM2|161253|RAS (RAD and GEM)-like GTP binding 2##AL834518|LRP10|26020|low density lipoprotein receptor-related protein 10##AK291030|LRP10|26020|low density lipoprotein receptor-related protein 10##BC113714|LRP10|26020|low density lipoprotein receptor-related protein 10##BC113716|LRP10|26020|low density lipoprotein receptor-related protein 10##NM_014045|LRP10|26020|low density lipoprotein receptor-related protein 10##AY358399|LRP10|26020|low density lipoprotein receptor-related protein 10##BX161500|LRP10|26020|low density lipoprotein receptor-related protein 10##BX161440|RBM23|55147|RNA binding motif protein 23##BC024208|RBM23|55147|RNA binding motif protein 23##BC106012|RBM23|55147|RNA binding motif protein 23##AL834198|RBM23|55147|RNA binding motif protein 23##AF087905|RBM23|55147|RNA binding motif protein 23##AK001344|RBM23|55147|RNA binding motif protein 23##AF275678|RBM23|55147|RNA binding motif protein 23##AK125593|RBM23|55147|RNA binding motif protein 23##AK225792|RBM23|55147|RNA binding motif protein 23##AK295448|RBM23|55147|RNA binding motif protein 23##AK303668|RBM23|55147|RNA binding motif protein 23##AK308055|RBM23|55147|RNA binding motif protein 23##AK315620|RBM23|55147|RNA binding motif protein 23##BC002566|RBM23|55147|RNA binding motif protein 23##NM_001077351|RBM23|55147|RNA binding motif protein 23##NM_001077352|RBM23|55147|RNA binding motif protein 23##NM_018107|RBM23|55147|RNA binding motif protein 23	0.0	0.997997	CTCF.p2:-4:0.998
chr17	38324756	38324933	reg1008161.p1	6.066	+	TSC_hg19_v1_chr17_+_38296796 CU690706	-28048	+	TSC_hg19_v1_chr17_+_38296779 BC030008	-28067	+	NM_007359 TSC_hg19_v1_chr17_+_38296550 AK292425 AK310635 X80199 BC050526 BC044656	-28278	+	NM_016339	9397	+	TSC_hg19_v1_chr17_+_38375614 AK289779 AK311544 AL834239 NM_133264 BC025965 AK315836 AK055057 AK290301 BC065551 AF370396	50770	+	AK313620 TSC_hg19_v1_chr17_+_38444130	119286	+	BC030008|CASC3|22794|cancer susceptibility candidate 3##NM_007359|CASC3|22794|cancer susceptibility candidate 3##AK292425|CASC3|22794|cancer susceptibility candidate 3##AK310635|CASC3|22794|cancer susceptibility candidate 3##X80199|CASC3|22794|cancer susceptibility candidate 3##BC050526|CASC3|22794|cancer susceptibility candidate 3##BC044656|CASC3|22794|cancer susceptibility candidate 3##NM_016339|RAPGEFL1|51195|Rap guanine nucleotide exchange factor (GEF)-like 1##AK289779|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK311544|WIPF2|147179|WAS/WASL interacting protein family, member 2##AL834239|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_133264|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC025965|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK315836|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK055057|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK290301|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC065551|WIPF2|147179|WAS/WASL interacting protein family, member 2##AF370396|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK313620|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)	0.0	0.0	
chr2	214402413	214402593	reg1004250.p2	6.066	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-253346	+	AK124960 NM_001242575	-253575	-	BC028936 NM_001079526	-386171	-	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	873957	+	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	1271856	-	AY033486 NM_015657	1494306	-	BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	0.012157	0.0	
chr2	97194064	97194136	reg1002278.p2	6.065	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-192564	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-192624	+	NM_178495 NM_001163524 BC034503	-202152	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	8385	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	109919	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	109967	-	BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	1.025455	0.0	
chr8	104275646	104275803	reg1008026.p2	6.065	+	TSC_hg19_v1_chr8_+_104152984 NM_001024372 NM_024812 BC035038 AK022077 BC011517 AK093819 AF371319 AF371323 DQ893318 DQ896633	-122724	+	TSC_hg19_v1_chr8_+_104033310 AK308632 BC010960 X69151 AK000064	-242404	+	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	-242457	+	NM_001164615 BX640609 AK313789	34950	+	NM_001164616 NM_003506 TSC_hg19_v1_chr8_+_104311103 AK299341 AK296824 BC060836 BC036106 AB012911 AK304092 AK316544	35367	+	TSC_hg19_v1_chr8_+_104383774 AK130063 BC021025 AY358914 AK300273	108016	+	NM_001024372|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_024812|BAALC|79870|brain and acute leukemia, cytoplasmic##BC035038|BAALC|79870|brain and acute leukemia, cytoplasmic##AK022077|BAALC|79870|brain and acute leukemia, cytoplasmic##BC011517|BAALC|79870|brain and acute leukemia, cytoplasmic##AK093819|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371319|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371323|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ893318|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ896633|BAALC|79870|brain and acute leukemia, cytoplasmic##AK308632|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BC010960|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##X69151|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK000064|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##NM_001164615|FZD6|8323|frizzled family receptor 6##BX640609|FZD6|8323|frizzled family receptor 6##AK313789|FZD6|8323|frizzled family receptor 6##NM_001164616|FZD6|8323|frizzled family receptor 6##NM_003506|FZD6|8323|frizzled family receptor 6##AK299341|FZD6|8323|frizzled family receptor 6##AK296824|FZD6|8323|frizzled family receptor 6##BC060836|FZD6|8323|frizzled family receptor 6##BC036106|FZD6|8323|frizzled family receptor 6##AB012911|FZD6|8323|frizzled family receptor 6##AK304092|FZD6|8323|frizzled family receptor 6##AK316544|FZD6|8323|frizzled family receptor 6##AK130063|CTHRC1|115908|collagen triple helix repeat containing 1##BC021025|CTHRC1|115908|collagen triple helix repeat containing 1##AY358914|CTHRC1|115908|collagen triple helix repeat containing 1##AK300273|CTHRC1|115908|collagen triple helix repeat containing 1	0.998341	0.0	denovo_WM_7:22:0.885
chr1	200855107	200855287	reg1008537.p2	6.064	+	BC126386 BC126388 AK315339 NM_005298	-13074	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-146526	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-216089	-	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	5449	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	8800	+	AM177180 AB527174 BC137281 BC144557 TSC_hg19_v1_chr1_-_200992598	137357	-	BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106##AM177180|KIF21B|23046|kinesin family member 21B##BC137281|KIF21B|23046|kinesin family member 21B##BC144557|KIF21B|23046|kinesin family member 21B	0.875081	0.0	denovo_WM_7:6:0.875
chr19	1672485	1672608	reg1007936.p1	6.064	+	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	-20207	-	AB385055 BC110579 BC110580 M31523 NM_001136139	-22281	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-67073	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	81206	+	TSC_hg19_v1_chr19_+_1776120 AK074606	103641	+	AY302538 NM_001178002 TSC_hg19_v1_chr19_-_1812276 BC035162 NM_138813 AK125225 AK125969	139691	-	M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##NM_001080488|ONECUT3|390874|one cut homeobox 3##AY302538|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_001178002|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##BC035162|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_138813|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125225|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125969|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3	0.834907	0.321843	denovo_WM_7:54:0.335	CTCF.p2:-60:0.322
chr20	50236413	50236521	reg1006907.p1	6.064	+	AK304147 AK226146 EU887575 EU887579 TSC_hg19_v1_chr20_-_50179379	-57083	-	EU887574 EU887577 NM_001136021	-57300	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	-77192	-	BC110591 BC110592 BC063701 TSC_hg19_v1_chr20_-_50314160	77611	-	TSC_hg19_v1_chr20_-_50384875 AB385363 AB014511 AK299064	148411	-	TSC_hg19_v1_chr20_-_50384925 NM_006045	148461	-	AK304147|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##AK226146|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887575|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887579|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC110591|ATP9A|10079|ATPase, class II, type 9A##BC110592|ATP9A|10079|ATPase, class II, type 9A##BC063701|ATP9A|10079|ATPase, class II, type 9A##AB014511|ATP9A|10079|ATPase, class II, type 9A##AK299064|ATP9A|10079|ATPase, class II, type 9A##NM_006045|ATP9A|10079|ATPase, class II, type 9A	0.999365	0.0	
chr4	86531569	86531749	reg1006433.p1	6.064	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-135316	+	NM_014991	-644116	-	NM_001263 U65887	-1027566	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	168189	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	168239	+	AK307423 TSC_hg19_v1_chr4_+_86749064	217395	+	NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24	1.977431	0.0	denovo_WM_7:-30:0.526	denovo_WM_7:-31:0.264	denovo_WM_7:-45:0.324	denovo_WM_7:-46:0.586
chr16	15384315	15384428	reg1007101.p1	6.063	+	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	-196243	-	CU675948 AF092440 BC017336 NM_173474 AK300557 TSC_hg19_v1_chr16_-_15149897	-234494	-	AY203955 TSC_hg19_v1_chr16_+_15069016 DQ111782	-315339	+	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	105230	+	TSC_hg19_v1_chr16_+_15489637 AK096918 AK293380 BC061514	105279	+	AK057180 NM_033201 TSC_hg19_v1_chr16_+_15528363 AK293431 BC008967	144029	+	AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF092440|NTAN1|123803|N-terminal asparagine amidase##BC017336|NTAN1|123803|N-terminal asparagine amidase##NM_173474|NTAN1|123803|N-terminal asparagine amidase##AK300557|NTAN1|123803|N-terminal asparagine amidase##AY203955|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ111782|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK096918|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK293380|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC061514|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK057180|C16orf45|89927|chromosome 16 open reading frame 45##NM_033201|C16orf45|89927|chromosome 16 open reading frame 45##AK293431|C16orf45|89927|chromosome 16 open reading frame 45##BC008967|C16orf45|89927|chromosome 16 open reading frame 45	0.995095	0.0	
chr17	37039953	37040130	reg1004698.p1	6.063	+	TSC_hg19_v1_chr17_+_37026351 X82456 BC012460 DQ891539 DQ894728 AB463833 CU675705 AK289847	-13645	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	-13727	+	AK307868 TSC_hg19_v1_chr17_+_37026294 AK294704	-13760	+	BC140879 BC140880 NM_001008777 AY700575	83598	-	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	267691	-	TSC_hg19_v1_chr17_-_37307863 BC036059	267806	-	X82456|LASP1|3927|LIM and SH3 protein 1##BC012460|LASP1|3927|LIM and SH3 protein 1##DQ891539|LASP1|3927|LIM and SH3 protein 1##DQ894728|LASP1|3927|LIM and SH3 protein 1##AK289847|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1##AK307868|LASP1|3927|LIM and SH3 protein 1##BC140879|FBXO47|494188|F-box protein 47##BC140880|FBXO47|494188|F-box protein 47##NM_001008777|FBXO47|494188|F-box protein 47##AY700575|FBXO47|494188|F-box protein 47##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1	0.989869	0.0	denovo_WM_7:-37:0.228	denovo_WM_7:-38:0.228	denovo_WM_7:-39:0.228	denovo_WM_7:-40:0.228
chr19	4399429	4399609	reg1000898.p2	6.063	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-55960	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-56769	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-60721	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	874	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	1034	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	3197	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.0	0.0	
chr20	5778843	5778981	reg1007009.p1	6.063	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	-47846	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-187325	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-483876	-	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	113214	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	152211	-	AJ439063 NM_032485 NM_182802 AK297806 BC101054 BC101055 BC101056 BC101057 BC080656 AY158211 BC005170 AK314654	152571	+	AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AJ439063|MCM8|84515|minichromosome maintenance complex component 8##NM_032485|MCM8|84515|minichromosome maintenance complex component 8##NM_182802|MCM8|84515|minichromosome maintenance complex component 8##AK297806|MCM8|84515|minichromosome maintenance complex component 8##BC101054|MCM8|84515|minichromosome maintenance complex component 8##BC101055|MCM8|84515|minichromosome maintenance complex component 8##BC101056|MCM8|84515|minichromosome maintenance complex component 8##BC101057|MCM8|84515|minichromosome maintenance complex component 8##BC080656|MCM8|84515|minichromosome maintenance complex component 8##AY158211|MCM8|84515|minichromosome maintenance complex component 8##BC005170|MCM8|84515|minichromosome maintenance complex component 8##AK314654|MCM8|84515|minichromosome maintenance complex component 8	0.985333	0.0	denovo_WM_7:49:0.963
chr1	33967042	33967159	reg1006251.p1	6.062	+	NM_145238 AK131405 TSC_hg19_v1_chr1_+_33938251 AK290195 BC008827 BC011404	-28849	+	TSC_hg19_v1_chr1_-_33896604 AJ242730	-70492	-	AB527842 AJ419231 BC130630 BC144121 NM_198040	-125933	-	AK097707 NM_145205	358975	+	TSC_hg19_v1_chr1_-_34630856 AB212622	663765	-	AY210418 NM_052896	664342	-	NM_145238|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK131405|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AK290195|ZSCAN20|7579|zinc finger and SCAN domain containing 20##BC008827|ZSCAN20|7579|zinc finger and SCAN domain containing 20##BC011404|ZSCAN20|7579|zinc finger and SCAN domain containing 20##AJ242730|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##AJ419231|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC130630|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##BC144121|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##NM_198040|PHC2|1912|polyhomeotic homolog 2 (Drosophila)##AK097707|HMGB4|127540|high mobility group box 4##NM_145205|HMGB4|127540|high mobility group box 4##AB212622|CSMD2|114784|CUB and Sushi multiple domains 2##AY210418|CSMD2|114784|CUB and Sushi multiple domains 2##NM_052896|CSMD2|114784|CUB and Sushi multiple domains 2	0.993864	0.0	denovo_WM_7:43:0.711
chr17	71584523	71584654	reg1004232.p2	6.062	+	BC010451 TSC_hg19_v1_chr17_-_71308141 AK097835 AK027385 AK312536 BC002774 NM_012121	-276448	-	BC157870 NM_001129885	-326570	-	BC005005 TSC_hg19_v1_chr17_+_71229423	-355198	+	NM_001144952	55638	-	NM_000999 NM_001035258 AK097905 TSC_hg19_v1_chr17_+_72199816 AB055771 AK312119	615227	+	TSC_hg19_v1_chr17_+_72199849 BC000603	615265	+	BC010451|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK097835|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK027385|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK312536|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##BC002774|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##NM_012121|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##BC157870|CPSF4L|642843|cleavage and polyadenylation specific factor 4-like##NM_001129885|CPSF4L|642843|cleavage and polyadenylation specific factor 4-like##BC005005|C17orf80|55028|chromosome 17 open reading frame 80##NM_001144952|SDK2|54549|sidekick cell adhesion molecule 2##NM_000999|RPL38|6169|ribosomal protein L38##NM_001035258|RPL38|6169|ribosomal protein L38##AB055771|RPL38|6169|ribosomal protein L38##AK312119|RPL38|6169|ribosomal protein L38##BC000603|RPL38|6169|ribosomal protein L38	1.95616	0.0	denovo_WM_7:-38:0.962	denovo_WM_7:-53:0.970
chr4	74439548	74439728	reg1007707.p2	6.062	+	AK290556 NM_001133 BC109020 BC109021 L35486	-92168	+	NM_001134 V01514 AK297669 TSC_hg19_v1_chr4_+_74301937 AK297674 AK314817 BC027881 DQ890942 DQ894103 CU693306	-137683	+	X51365 X51363 X51364 TSC_hg19_v1_chr4_+_74286879	-152776	+	AY217664 BC058835 NM_177532 AY217665 CR749283 AK126346 NM_201431	46581	-	NM_000584 Y00787 AK131067 AK311874 M17017 M26383 BC013615 AF043337 AB590232 DQ890564 DQ893727 BT007067 CR542151 Z11686	166660	+	NM_002993 AK311981 U81234 BC013744 DQ891500 DQ894692 AB463491	262731	+	AK290556|AFM|173|afamin##NM_001133|AFM|173|afamin##BC109020|AFM|173|afamin##BC109021|AFM|173|afamin##L35486|AFM|173|afamin##NM_001134|AFP|174|alpha-fetoprotein##V01514|AFP|174|alpha-fetoprotein##AK297669|AFP|174|alpha-fetoprotein##AK297674|AFP|174|alpha-fetoprotein##AK314817|AFP|174|alpha-fetoprotein##BC027881|AFP|174|alpha-fetoprotein##DQ890942|AFP|174|alpha-fetoprotein##DQ894103|AFP|174|alpha-fetoprotein##X51365|ALB|213|albumin##X51363|ALB|213|albumin##X51364|ALB|213|albumin##AY217664|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##BC058835|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_177532|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AY217665|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##CR749283|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK126346|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_201431|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_000584|IL8|3576|interleukin 8##Y00787|IL8|3576|interleukin 8##AK131067|IL8|3576|interleukin 8##AK311874|IL8|3576|interleukin 8##M17017|IL8|3576|interleukin 8##M26383|IL8|3576|interleukin 8##BC013615|IL8|3576|interleukin 8##DQ890564|IL8|3576|interleukin 8##DQ893727|IL8|3576|interleukin 8##BT007067|IL8|3576|interleukin 8##CR542151|IL8|3576|interleukin 8##Z11686|IL8|3576|interleukin 8##NM_002993|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##AK311981|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##U81234|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##BC013744|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ891500|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ894692|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)	0.0	0.951733	CTCF.p2:-35:0.952
chr7	6415453	6415633	reg1003323.p2	6.062	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	-1316	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-27033	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-103312	-	TSC_hg19_v1_chr7_-_6474593 AK298910	59047	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	71996	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	72065	-	NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta	0.0	0.0	
chr8	81235244	81235391	reg1005259.p2	6.062	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-151547	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	-242288	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	-292815	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	163167	+	AK131274 NM_001033723	551698	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	788997	-	BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1	0.0	0.106913	
chr2	161263454	161263561	reg1005218.p1	6.061	+	BC069687 BC069706 BC069763 BC080620 BC065192 TSC_hg19_v1_chr2_-_161130216	-133318	-	AK304203 AL831998 TSC_hg19_v1_chr2_-_161056784 AK290300 AK313944	-206712	-	AB463075 AM393800 M35198 NM_000888 BC121178 BC143656	-206920	-	CU676342 D28482 X77494 AK225887 L11289 TSC_hg19_v1_chr2_-_161350025 AK309949 BC012992 BC012993 AK297812	86452	-	BC018951 TSC_hg19_v1_chr2_-_161350319 NM_002897 NM_016836	86810	-	NM_004180 NM_133484 U59863 U63830	729958	+	BC069687|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069706|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069763|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC080620|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC065192|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK304203|ITGB6|3694|integrin, beta 6##AL831998|ITGB6|3694|integrin, beta 6##AK290300|ITGB6|3694|integrin, beta 6##AK313944|ITGB6|3694|integrin, beta 6##AM393800|ITGB6|3694|integrin, beta 6##M35198|ITGB6|3694|integrin, beta 6##NM_000888|ITGB6|3694|integrin, beta 6##BC121178|ITGB6|3694|integrin, beta 6##BC143656|ITGB6|3694|integrin, beta 6##D28482|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##X77494|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK225887|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##L11289|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK309949|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC012992|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC012993|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK297812|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC018951|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_002897|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_016836|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_004180|TANK|10010|TRAF family member-associated NFKB activator##NM_133484|TANK|10010|TRAF family member-associated NFKB activator##U59863|TANK|10010|TRAF family member-associated NFKB activator##U63830|TANK|10010|TRAF family member-associated NFKB activator	0.965244	0.0	denovo_WM_7:-17:0.822
chr6	155648847	155648991	reg1007411.p2	6.061	+	TSC_hg19_v1_chr6_-_155635619 BC005183 BC017788 NM_016020 AF151833 BC054007 AK289484	-13296	-	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	-13334	-	BC020838 NM_001001346	-63773	+	AF190122 NM_015718	128117	-	TSC_hg19_v1_chr6_+_157099052 NM_017519 NM_020732 Y08266	1450144	+	TSC_hg19_v1_chr6_+_157099206 AB587572	1450306	+	BC005183|TFB1M|51106|transcription factor B1, mitochondrial##BC017788|TFB1M|51106|transcription factor B1, mitochondrial##NM_016020|TFB1M|51106|transcription factor B1, mitochondrial##AF151833|TFB1M|51106|transcription factor B1, mitochondrial##BC054007|TFB1M|51106|transcription factor B1, mitochondrial##AK289484|TFB1M|51106|transcription factor B1, mitochondrial##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20##AF190122|NOX3|50508|NADPH oxidase 3##NM_015718|NOX3|50508|NADPH oxidase 3##NM_017519|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##NM_020732|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##Y08266|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)	0.0	0.734417	CTCF.p2:-87:0.734
chr7	74221463	74221643	reg1007662.p1	6.061	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	-33201	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-149431	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-149509	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	46286	-	TSC_hg19_v1_chr7_-_74306679 BC002581	85122	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	85130	-	BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2##AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2	1.938649	0.0	denovo_WM_7:77:0.331	denovo_WM_7:78:0.331	denovo_WM_7:79:0.331	denovo_WM_7:-86:0.625
chr14	68785667	68785773	reg1007445.p1	6.060	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-499200	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-502421	-	AK315462 NM_152443	-617118	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	474000	-	NM_001244698 NM_004926	474910	-	NM_001244701 AB528867	477264	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.08697	0.0	
chr19	17517253	17517390	reg1005454.p3	6.060	+	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	-755	+	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	-902	-	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	-29189	-	TSC_hg19_v1_chr19_+_17530855 AK057057 AK289487	13527	+	TSC_hg19_v1_chr19_+_17530872 BC011840 NM_138401 BC007883	13578	+	NM_001190844	42054	-	AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##AK057057|FAM125A|93343|family with sequence similarity 125, member A##AK289487|FAM125A|93343|family with sequence similarity 125, member A##BC011840|FAM125A|93343|family with sequence similarity 125, member A##NM_138401|FAM125A|93343|family with sequence similarity 125, member A##BC007883|FAM125A|93343|family with sequence similarity 125, member A##NM_001190844|TMEM221|100130519|transmembrane protein 221	0.97126	0.0	denovo_WM_7:19:0.543	denovo_WM_7:20:0.287
chr22	41465022	41465148	reg1007072.p1	6.060	+	TSC_hg19_v1_chr22_+_41347389 BC017370 CR456560 AK315722 AF140598 BC001466 AB590096 AF142059 CU013160 CU013448 CU674722 AF085906 AY099360	-117679	+	TSC_hg19_v1_chr22_+_41347364 NM_014248	-117737	+	AB528124 CU013018 CU013306 CR456468 BC112135 AF085232 NM_145174	-207022	-	TSC_hg19_v1_chr22_+_41487787 U01877	22705	+	TSC_hg19_v1_chr22_+_41488610 NM_001429 BC053889	23541	+	TSC_hg19_v1_chr22_-_41593483 BC040700	128404	-	BC017370|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CR456560|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK315722|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF140598|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC001466|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF142059|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013160|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013448|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF085906|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AY099360|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##NM_014248|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013018|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CU013306|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CR456468|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##BC112135|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##AF085232|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_145174|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##U01877|EP300|2033|E1A binding protein p300##NM_001429|EP300|2033|E1A binding protein p300##BC053889|EP300|2033|E1A binding protein p300	0.0	0.0	
chr3	150103236	150103416	reg1002537.p2	6.059	+	BC012363 TSC_hg19_v1_chr3_+_149689094	-414246	+	TSC_hg19_v1_chr3_-_149688960 BC043646	-414397	-	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	-414630	-	TSC_hg19_v1_chr3_+_150126084 AK297383 AB014569	22746	+	TSC_hg19_v1_chr3_+_150126774 BC044643 NM_014779	23437	+	X75694 CR533472 TSC_hg19_v1_chr3_-_150264030	160644	-	BC012363|LOC646903|646903|uncharacterized LOC646903##BC043646|PFN2|5217|profilin 2##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##AK297383|TSC22D2|9819|TSC22 domain family, member 2##AB014569|TSC22D2|9819|TSC22 domain family, member 2##BC044643|TSC22D2|9819|TSC22 domain family, member 2##NM_014779|TSC22D2|9819|TSC22 domain family, member 2##X75694|SERP1|27230|stress-associated endoplasmic reticulum protein 1##CR533472|SERP1|27230|stress-associated endoplasmic reticulum protein 1	0.0	0.0	
chr10	96104631	96104802	reg1006526.p1	6.058	+	AK297779 AK289852 NM_001165979 AF170071	-255885	+	TSC_hg19_v1_chr10_+_95753696 AB040949 BC151854 NM_016341	-351002	+	TSC_hg19_v1_chr10_+_95653753 AK091309 AX746907 NM_001134658 NM_153226 BC036382 BC058549 BC143283 BC143284 BC104814 BC047102	-450976	+	AB077992 TSC_hg19_v1_chr10_-_96122697 BC049850 NM_022451 AK091246 AX746873 BC030999 AK292520	17960	-	NM_015188 TSC_hg19_v1_chr10_+_96162185	57470	+	TSC_hg19_v1_chr10_+_96162276 AB011180 AB449898	57605	+	AK297779|PLCE1|51196|phospholipase C, epsilon 1##AK289852|PLCE1|51196|phospholipase C, epsilon 1##NM_001165979|PLCE1|51196|phospholipase C, epsilon 1##AF170071|PLCE1|51196|phospholipase C, epsilon 1##AB040949|PLCE1|51196|phospholipase C, epsilon 1##BC151854|PLCE1|51196|phospholipase C, epsilon 1##NM_016341|PLCE1|51196|phospholipase C, epsilon 1##AK091309|SLC35G1|159371|solute carrier family 35, member G1##NM_001134658|SLC35G1|159371|solute carrier family 35, member G1##NM_153226|SLC35G1|159371|solute carrier family 35, member G1##BC036382|SLC35G1|159371|solute carrier family 35, member G1##BC143284|SLC35G1|159371|solute carrier family 35, member G1##BC104814|SLC35G1|159371|solute carrier family 35, member G1##BC047102|SLC35G1|159371|solute carrier family 35, member G1##AB077992|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##BC049850|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##NM_022451|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK091246|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##BC030999|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK292520|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##NM_015188|TBC1D12|23232|TBC1 domain family, member 12##AB011180|TBC1D12|23232|TBC1 domain family, member 12##AB449898|TBC1D12|23232|TBC1 domain family, member 12	0.0	0.0	
chr1	46509262	46509392	reg1006667.p1	6.058	+	TSC_hg19_v1_chr1_+_46379267 AK027123 AK309510	-130065	+	TSC_hg19_v1_chr1_+_46269283 AB047005 NM_015112 BC065499	-240029	+	BC032544 TSC_hg19_v1_chr1_-_46216325 AK023880 NM_001145349 NM_005897	-292928	-	TSC_hg19_v1_chr1_-_46598298 CR749649 BC021622 NM_003629 EU832448 EU832531 BX537388 BC094768 AK313726 NM_001114172	89151	-	NM_005727 AK313774	131426	+	TSC_hg19_v1_chr1_+_46646203 BC007290 BC000695 BC013404 AF065388 AF133425	136883	+	AK027123|MAST2|23139|microtubule associated serine/threonine kinase 2##AK309510|MAST2|23139|microtubule associated serine/threonine kinase 2##AB047005|MAST2|23139|microtubule associated serine/threonine kinase 2##NM_015112|MAST2|23139|microtubule associated serine/threonine kinase 2##BC065499|MAST2|23139|microtubule associated serine/threonine kinase 2##BC032544|IPP|3652|intracisternal A particle-promoted polypeptide##AK023880|IPP|3652|intracisternal A particle-promoted polypeptide##NM_001145349|IPP|3652|intracisternal A particle-promoted polypeptide##NM_005897|IPP|3652|intracisternal A particle-promoted polypeptide##CR749649|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC021622|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_003629|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832448|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832531|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BX537388|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC094768|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AK313726|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_001114172|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_005727|TSPAN1|10103|tetraspanin 1##AK313774|TSPAN1|10103|tetraspanin 1##BC007290|TSPAN1|10103|tetraspanin 1##BC000695|TSPAN1|10103|tetraspanin 1##BC013404|TSPAN1|10103|tetraspanin 1##AF065388|TSPAN1|10103|tetraspanin 1##AF133425|TSPAN1|10103|tetraspanin 1	0.0	0.0	
chr3	17192925	17193105	reg1002725.p1	6.057	+	BC036392 NM_015184	-218434	+	AB029015 NM_001144382	-266564	+	U65918 U66726 U66078 BC027595 NM_001351	-546049	-	AK310539 NM_001134381	548496	-	D86965 NM_014744	589383	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	591152	-	BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5	0.0	0.0	
chr15	90932078	90932258	reg1007504.p1	6.056	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-629	+	TSC_hg19_v1_chr15_+_90931506 BC005906	-662	+	TSC_hg19_v1_chr15_+_90931499 AK304337	-674	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	141028	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	328446	+	NM_002569 X17094	479716	+	BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC005906|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK304337|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)	0.983093	0.0	denovo_WM_7:13:0.552	denovo_WM_7:15:0.375
chr12	125402036	125402216	reg1001756.p1	6.055	+	NM_021009	-2540	-	AY732488 AY819759 BC008955 BC080583 AB209782 BC000449 AK056939 AK098827 AK129749 AK291539 BC039193 BC093445 AB009010 TSC_hg19_v1_chr12_-_125399197 AK026846	-2953	-	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	-53653	-	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	71518	-	TSC_hg19_v1_chr12_+_125478217 NM_080626 BC034525	76064	+	TSC_hg19_v1_chr12_+_125478249 AF284094	76134	+	NM_021009|UBC|7316|ubiquitin C##AY732488|UBC|7316|ubiquitin C##AY819759|UBC|7316|ubiquitin C##BC008955|UBC|7316|ubiquitin C##BC080583|UBC|7316|ubiquitin C##AB209782|UBC|7316|ubiquitin C##BC000449|UBC|7316|ubiquitin C##AK056939|UBC|7316|ubiquitin C##AK098827|UBC|7316|ubiquitin C##AK129749|UBC|7316|ubiquitin C##AK291539|UBC|7316|ubiquitin C##BC039193|UBC|7316|ubiquitin C##BC093445|UBC|7316|ubiquitin C##AB009010|UBC|7316|ubiquitin C##AK026846|UBC|7316|ubiquitin C##NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_080626|BRI3BP|140707|BRI3 binding protein##BC034525|BRI3BP|140707|BRI3 binding protein##AF284094|BRI3BP|140707|BRI3 binding protein	0.0	0.037605	
chr22	45077431	45077575	reg1007890.p1	6.054	+	AK091884 TSC_hg19_v1_chr22_+_45072964 AK055848	-4533	+	NM_001017530 NM_001198721 NM_015366	-4816	+	TSC_hg19_v1_chr22_+_45064630 AY859540 NM_001017528 NM_001017529	-13008	+	TSC_hg19_v1_chr22_+_45098090 NM_181333	20565	+	AK291564 TSC_hg19_v1_chr22_+_45098246 AF177331 AL355192 NM_181334	20750	+	AK001306 NM_001017526 NM_001198726 NM_181335 BC059382 BC067824 BC048280	70958	+	AK091884|PRR5|55615|proline rich 5 (renal)##AK055848|PRR5|55615|proline rich 5 (renal)##NM_001017530|PRR5|55615|proline rich 5 (renal)##NM_001198721|PRR5|55615|proline rich 5 (renal)##NM_015366|PRR5|55615|proline rich 5 (renal)##AY859540|PRR5|55615|proline rich 5 (renal)##NM_001017528|PRR5|55615|proline rich 5 (renal)##NM_001017529|PRR5|55615|proline rich 5 (renal)##NM_181333|PRR5|55615|proline rich 5 (renal)##AK291564|PRR5|55615|proline rich 5 (renal)##AF177331|PRR5|55615|proline rich 5 (renal)##AL355192|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181334|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##AK001306|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001017526|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001198726|ARHGAP8|23779|Rho GTPase activating protein 8##NM_181335|ARHGAP8|23779|Rho GTPase activating protein 8##BC059382|ARHGAP8|23779|Rho GTPase activating protein 8##BC067824|ARHGAP8|23779|Rho GTPase activating protein 8##BC048280|ARHGAP8|23779|Rho GTPase activating protein 8	0.997832	0.0	denovo_WM_7:-22:0.740
chr5	106716110	106716290	reg1003157.p2	6.053	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3817719	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4121743	+	BC024591 NM_015216 AB463068	-4250926	+	AK308672 NM_001962 U26403	290390	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1000930	-	BC063316 NM_001163315	1001598	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	1.994553	0.0	denovo_WM_7:86:0.750	denovo_WM_7:87:0.219	denovo_WM_7:-94:0.208
chr19	4180166	4180339	reg1006157.p2	6.051	+	TSC_hg19_v1_chr19_+_4153636 AK313099 AB050902 AK172839 NM_032607 AB073612 BC101504 BC143609 BC143610 BC101508 EU446882	-26585	+	TSC_hg19_v1_chr19_-_4124145 BC000471 NM_030662	-56119	-	AB463893 DQ893601 DQ895060 L11285 BC018645 TSC_hg19_v1_chr19_-_4124114 BX538081	-56260	-	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	2293	-	NM_133475	3098	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	49268	+	AK313099|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AB050902|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AK172839|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##NM_032607|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AB073612|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC101504|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC143609|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC143610|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC101508|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##EU446882|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC000471|MAP2K2|5605|mitogen-activated protein kinase kinase 2##NM_030662|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ893601|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ895060|MAP2K2|5605|mitogen-activated protein kinase kinase 2##L11285|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BC018645|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BX538081|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3	0.0	0.0	
chr3	33294378	33294475	reg1007378.p2	6.051	+	AB011099 NM_015551	-33720	-	TSC_hg19_v1_chr3_+_33155562 AJ006470 CU679079 DQ893221 DQ896550	-138853	+	TSC_hg19_v1_chr3_+_33155553 NM_006371 AK314719 AK298250 AK075401 AK126433 AK001634 AK091772 BC008745 AK097650 AK092990	-138926	+	TSC_hg19_v1_chr3_+_33318965 AK001271 NM_012157 AK302218 NM_001171713 AK303764 AK299665 AK294209 AF174589 AK316229 AK001438 AK298967 AK297534 AF186273 BC031556	24524	+	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	187110	-	TSC_hg19_v1_chr3_-_33481868 BC047235 NM_001128160 NM_014517	187439	-	AB011099|SUSD5|26032|sushi domain containing 5##NM_015551|SUSD5|26032|sushi domain containing 5##AJ006470|CRTAP|10491|cartilage associated protein##DQ893221|CRTAP|10491|cartilage associated protein##DQ896550|CRTAP|10491|cartilage associated protein##NM_006371|CRTAP|10491|cartilage associated protein##AK314719|CRTAP|10491|cartilage associated protein##AK298250|CRTAP|10491|cartilage associated protein##AK075401|CRTAP|10491|cartilage associated protein##AK126433|CRTAP|10491|cartilage associated protein##AK001634|CRTAP|10491|cartilage associated protein##AK091772|CRTAP|10491|cartilage associated protein##BC008745|CRTAP|10491|cartilage associated protein##AK097650|CRTAP|10491|cartilage associated protein##AK092990|CRTAP|10491|cartilage associated protein##AK001271|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_012157|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK302218|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_001171713|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK303764|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK299665|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK294209|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF174589|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK316229|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK001438|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK298967|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK297534|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF186273|FBXL2|25827|F-box and leucine-rich repeat protein 2##BC031556|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)##BC047235|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128160|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_014517|UBP1|7342|upstream binding protein 1 (LBP-1a)	1.662466	0.0	denovo_WM_7:26:0.258	denovo_WM_7:27:0.735	denovo_WM_7:48:0.669
chr20	47940262	47940418	reg1005861.p1	6.050	+	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-45145	+	TSC_hg19_v1_chr20_+_47895176 BC042807 CR936805	-45168	+	TSC_hg19_v1_chr20_-_47894629 BC030789 NM_021035	-45667	-	BC110572 BC110573 NM_004975	158839	-	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	244349	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	389890	-	BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC042807|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##CR936805|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC030789|ZNFX1|57169|zinc finger, NFX1-type containing 1##NM_021035|ZNFX1|57169|zinc finger, NFX1-type containing 1##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.0	0.0	
chr22	17702043	17702145	reg1007451.p1	6.050	+	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-1731	-	AF190746 NM_017424	-11316	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-21580	-	TSC_hg19_v1_chr22_-_17747522 AF277398	45477	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	341125	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	409351	-	AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.996668	0.0	denovo_WM_7:-53:0.826
chr3	52730937	52731089	reg1007207.p1	6.050	+	AF191018 NM_014366 NM_206825 NM_206826 TSC_hg19_v1_chr3_+_52720047 AK315484 AK027514 AK297634 AK027516 BC001024 AB463711 CU674504 EU831969 EU832062	-10992	+	TSC_hg19_v1_chr3_-_52719930 AF197569 NM_018313	-11244	-	AY281068 AF177387 AF225870 AF225871 AF225872 BC115009 BC115010 BC115011 BC116450 BC129934 BC129935 NM_018165 NM_181042	-17280	-	BC119670 BC119671 AK027517 NM_152932 AY358579	6603	-	TSC_hg19_v1_chr3_-_52739602 AF157318 AF175227 AF176777	8564	-	TSC_hg19_v1_chr3_-_52739724 L13435 AK311674 CR749821	8739	-	AF191018|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_014366|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206825|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206826|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK315484|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027514|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027516|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC001024|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU831969|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU832062|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AF197569|PBRM1|55193|polybromo 1##NM_018313|PBRM1|55193|polybromo 1##AY281068|PBRM1|55193|polybromo 1##AF177387|PBRM1|55193|polybromo 1##AF225870|PBRM1|55193|polybromo 1##AF225871|PBRM1|55193|polybromo 1##AF225872|PBRM1|55193|polybromo 1##BC115009|PBRM1|55193|polybromo 1##BC115010|PBRM1|55193|polybromo 1##BC115011|PBRM1|55193|polybromo 1##BC116450|PBRM1|55193|polybromo 1##BC129934|PBRM1|55193|polybromo 1##BC129935|PBRM1|55193|polybromo 1##NM_018165|PBRM1|55193|polybromo 1##NM_181042|PBRM1|55193|polybromo 1##BC119670|GLT8D1|55830|glycosyltransferase 8 domain containing 1##BC119671|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK027517|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_152932|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AY358579|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AF157318|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AF175227|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AF176777|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK311674|GLT8D1|55830|glycosyltransferase 8 domain containing 1##CR749821|GLT8D1|55830|glycosyltransferase 8 domain containing 1	0.0	0.0	
chr8	19502231	19502341	reg1006326.p1	6.050	+	BX649103 NM_001130518	-42256	-	TSC_hg19_v1_chr8_+_19171505 NM_001174160 NM_022071 AK024799 AK293301 BC082982 NM_001174159	-331003	+	TSC_hg19_v1_chr8_-_18871214 AK091317 AX746913 NM_015310	-631000	-	AY358441 NM_018371	37807	-	AK314625 TSC_hg19_v1_chr8_-_19615422	113131	-	TSC_hg19_v1_chr8_+_19674936 NM_018142	172635	+	BX649103|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001130518|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001174160|SH2D4A|63898|SH2 domain containing 4A##NM_022071|SH2D4A|63898|SH2 domain containing 4A##AK024799|SH2D4A|63898|SH2 domain containing 4A##AK293301|SH2D4A|63898|SH2 domain containing 4A##BC082982|SH2D4A|63898|SH2 domain containing 4A##NM_001174159|SH2D4A|63898|SH2 domain containing 4A##AK091317|PSD3|23362|pleckstrin and Sec7 domain containing 3##NM_015310|PSD3|23362|pleckstrin and Sec7 domain containing 3##AY358441|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018371|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##AK314625|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018142|INTS10|55174|integrator complex subunit 10	1.750974	0.0	denovo_WM_7:-42:0.491	denovo_WM_7:-57:0.532
chr1	180878634	180878814	reg1008144.p2	6.047	+	AF099082 TSC_hg19_v1_chr1_+_180601194 AF115389 CU691970	-277447	+	TSC_hg19_v1_chr1_+_180601171 BC041142 AF089744	-277556	+	AK309750 TSC_hg19_v1_chr1_+_180601157	-277565	+	NM_020950 AB046834	3594	+	TSC_hg19_v1_chr1_+_180897572 BC000118	18857	+	BC009944 TSC_hg19_v1_chr1_-_180992009 AK299063 AK312440	113286	-	AF099082|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##AF115389|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##BC041142|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##AF089744|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##AK309750|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##NM_020950|KIAA1614|57710|KIAA1614##AB046834|KIAA1614|57710|KIAA1614##BC009944|STX6|10228|syntaxin 6##AK299063|STX6|10228|syntaxin 6##AK312440|STX6|10228|syntaxin 6	0.963258	0.0	denovo_WM_7:13:0.476	denovo_WM_7:14:0.476
chr20	48285177	48285334	reg1000874.p1	6.047	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-100566	-	BC110572 BC110573 NM_004975	-186076	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-390060	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	44975	-	AB004550 TSC_hg19_v1_chr20_-_48330359	45101	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	45211	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.0	0.0	
chr20	796812	796917	reg1006793.p1	6.047	+	AK074650 BC009750 AK291706 NM_033409	-47687	-	AY129025 NM_033129	-140042	-	AK125343 TSC_hg19_v1_chr20_-_656445	-140419	-	AK314165 NM_001042353 TSC_hg19_v1_chr20_+_814388	17520	+	BC004222 NM_207121	19846	+	NM_031424 BC022238 AB196290 DQ431181	28501	+	AK074650|C20orf54|113278|chromosome 20 open reading frame 54##BC009750|C20orf54|113278|chromosome 20 open reading frame 54##AK291706|C20orf54|113278|chromosome 20 open reading frame 54##NM_033409|C20orf54|113278|chromosome 20 open reading frame 54##AY129025|SCRT2|85508|scratch homolog 2, zinc finger protein (Drosophila)##NM_033129|SCRT2|85508|scratch homolog 2, zinc finger protein (Drosophila)##AK314165|FAM110A|83541|family with sequence similarity 110, member A##NM_001042353|FAM110A|83541|family with sequence similarity 110, member A##BC004222|FAM110A|83541|family with sequence similarity 110, member A##NM_207121|FAM110A|83541|family with sequence similarity 110, member A##NM_031424|FAM110A|83541|family with sequence similarity 110, member A##BC022238|FAM110A|83541|family with sequence similarity 110, member A##AB196290|FAM110A|83541|family with sequence similarity 110, member A##DQ431181|FAM110A|83541|family with sequence similarity 110, member A	0.0	0.418083	CTCF.p2:-15:0.418
chr3	72715443	72715575	reg1009213.p1	6.047	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-881238	-	AK313656 NM_173359	-911586	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-911987	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	182039	-	BC017274 TSC_hg19_v1_chr3_-_72897575	182066	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	182083	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.0	0.0	
chr12	126073890	126073956	reg1007502.p2	6.046	+	NM_052907	-262762	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-523855	+	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	-523982	+	NM_001136103	2678024	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	3234520	-	BC043528 TSC_hg19_v1_chr12_+_129337985	3264061	+	NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##NM_001136103|TMEM132C|92293|transmembrane protein 132C##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1	0.045776	0.0	
chr15	68517381	68517527	reg1008482.p2	6.046	+	TSC_hg19_v1_chr15_-_68498423 BX640817 NM_001031733 NM_033429	-19038	-	TSC_hg19_v1_chr15_-_68497633 BX640702 BC009516 AK092628 AK296804 AX747637	-19817	-	TSC_hg19_v1_chr15_+_68346659 BC053685 AB590990 AF077951 EF487997 EF487998 FJ997900 AY826819	-170793	+	CR457244 DQ891480 EU176598 BC013130 BC010849 TSC_hg19_v1_chr15_-_68522011 AK291175 AK293155 AK000568 AK027604 NM_017882	4552	-	TSC_hg19_v1_chr15_+_68570141 BC010122 BC014558 NM_015322	52639	+	TSC_hg19_v1_chr15_+_68570434 AK290167	52970	+	BX640817|CALML4|91860|calmodulin-like 4##NM_001031733|CALML4|91860|calmodulin-like 4##NM_033429|CALML4|91860|calmodulin-like 4##BX640702|CALML4|91860|calmodulin-like 4##BC009516|CALML4|91860|calmodulin-like 4##AK092628|CALML4|91860|calmodulin-like 4##AK296804|CALML4|91860|calmodulin-like 4##BC053685|PIAS1|8554|protein inhibitor of activated STAT, 1##AF077951|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487997|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487998|PIAS1|8554|protein inhibitor of activated STAT, 1##FJ997900|PIAS1|8554|protein inhibitor of activated STAT, 1##AY826819|PIAS1|8554|protein inhibitor of activated STAT, 1##CR457244|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##DQ891480|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##EU176598|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##BC013130|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##BC010849|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##AK291175|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##AK293155|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##AK000568|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##AK027604|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##NM_017882|CLN6|54982|ceroid-lipofuscinosis, neuronal 6, late infantile, variant##BC010122|FEM1B|10116|fem-1 homolog b (C. elegans)##BC014558|FEM1B|10116|fem-1 homolog b (C. elegans)##NM_015322|FEM1B|10116|fem-1 homolog b (C. elegans)##AK290167|FEM1B|10116|fem-1 homolog b (C. elegans)	0.0	0.0	
chr3	171779589	171779769	reg1001829.p1	6.046	+	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-21342	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-22221	+	TSC_hg19_v1_chr3_+_171757437 AK127826	-22245	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	386544	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	461499	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	649211	-	AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1	0.0	0.0	
chr9	133689614	133689735	reg1006066.p1	6.046	+	NM_007313 AB209642 M14753	-100355	+	TSC_hg19_v1_chr9_+_133569166 AK001916 AK296605 NM_014285 AK022460 AK090512 AK303163 BC000747 DQ892753 EU176744 AB463621	-120510	+	AY004252 NM_021619	-149694	+	TSC_hg19_v1_chr9_+_133710665 M30833 X16416	20993	+	TSC_hg19_v1_chr9_+_133710748 M14754 NM_005157	21114	+	AB109625 BC101127 BC101128 EU832764 GQ129307 NM_198180	79550	-	NM_007313|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##AB209642|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M14753|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##AK001916|EXOSC2|23404|exosome component 2##AK296605|EXOSC2|23404|exosome component 2##NM_014285|EXOSC2|23404|exosome component 2##AK022460|EXOSC2|23404|exosome component 2##AK090512|EXOSC2|23404|exosome component 2##AK303163|EXOSC2|23404|exosome component 2##BC000747|EXOSC2|23404|exosome component 2##DQ892753|EXOSC2|23404|exosome component 2##EU176744|EXOSC2|23404|exosome component 2##AY004252|PRDM12|59335|PR domain containing 12##NM_021619|PRDM12|59335|PR domain containing 12##M30833|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##X16416|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M14754|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##NM_005157|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##AB109625|QRFP|347148|pyroglutamylated RFamide peptide##BC101127|QRFP|347148|pyroglutamylated RFamide peptide##BC101128|QRFP|347148|pyroglutamylated RFamide peptide##EU832764|QRFP|347148|pyroglutamylated RFamide peptide##GQ129307|QRFP|347148|pyroglutamylated RFamide peptide##NM_198180|QRFP|347148|pyroglutamylated RFamide peptide	1.824194	0.0	denovo_WM_7:5:0.989	denovo_WM_7:23:0.836
chr7	27940647	27940796	reg1006816.p2	6.045	+	TSC_hg19_v1_chr7_+_27779811 U33821 BC050358	-160902	+	BC001764 TSC_hg19_v1_chr7_+_27779809	-160912	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	-160946	+	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	279480	-	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	279685	-	L05913 NM_182899	398218	+	U33821|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC050358|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5	0.0	0.0	
chr1	181881006	181881111	reg1006300.p1	6.044	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	-428358	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-823193	+	NM_016545	-823421	+	BC137223 BC137224 AK128654 NM_001009992	149739	-	TSC_hg19_v1_chr1_-_182354649 AK301600	473624	-	TSC_hg19_v1_chr1_-_182357758 BC127883	476705	-	NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase##BC127883|GLUL|2752|glutamate-ammonia ligase	0.996848	0.0	denovo_WM_7:6:0.312	denovo_WM_7:7:0.608
chr14	77788220	77788347	reg1008021.p2	6.044	+	NM_001513	-578	+	NM_145870 NM_145871 AK315154 BC001453 TSC_hg19_v1_chr14_+_77787378 AK309054 AK315609 BC052245 BC069047 AJ001838 U86529 CR456987	-913	+	CU689220 AB209114 BC031651 TSC_hg19_v1_chr14_-_77787215 BX248027 AF105020 AY090480 NM_013382	-1153	-	AY598329 NM_213601 TSC_hg19_v1_chr14_-_77843438 AK095650 BC101510	55143	-	BC104834 BC104836 AK093282 NM_001010860	55468	+	CU688228 BC066965 AK057371 NM_001113475	101031	-	NM_001513|GSTZ1|2954|glutathione transferase zeta 1##NM_145870|GSTZ1|2954|glutathione transferase zeta 1##NM_145871|GSTZ1|2954|glutathione transferase zeta 1##AK315154|GSTZ1|2954|glutathione transferase zeta 1##BC001453|GSTZ1|2954|glutathione transferase zeta 1##AK309054|GSTZ1|2954|glutathione transferase zeta 1##AK315609|GSTZ1|2954|glutathione transferase zeta 1##BC052245|GSTZ1|2954|glutathione transferase zeta 1##AJ001838|GSTZ1|2954|glutathione transferase zeta 1##U86529|GSTZ1|2954|glutathione transferase zeta 1##CR456987|GSTZ1|2954|glutathione transferase zeta 1##AB209114|POMT2|29954|protein-O-mannosyltransferase 2##BC031651|POMT2|29954|protein-O-mannosyltransferase 2##BX248027|POMT2|29954|protein-O-mannosyltransferase 2##AF105020|POMT2|29954|protein-O-mannosyltransferase 2##AY090480|POMT2|29954|protein-O-mannosyltransferase 2##NM_013382|POMT2|29954|protein-O-mannosyltransferase 2##AY598329|TMED8|283578|transmembrane emp24 protein transport domain containing 8##NM_213601|TMED8|283578|transmembrane emp24 protein transport domain containing 8##AK095650|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC101510|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC104834|SAMD15|161394|sterile alpha motif domain containing 15##BC104836|SAMD15|161394|sterile alpha motif domain containing 15##AK093282|SAMD15|161394|sterile alpha motif domain containing 15##NM_001010860|SAMD15|161394|sterile alpha motif domain containing 15##BC066965|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##AK057371|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##NM_001113475|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1	0.995666	0.0	denovo_WM_7:-49:0.456	denovo_WM_7:-50:0.456
chr16	29605669	29605786	reg1006786.p1	6.044	+	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-134501	+	BC022832 NM_001031827 NM_001039182	-139443	-	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	-139876	+	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	618	-	TSC_hg19_v1_chr16_-_29606667 AK316536	946	-	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	19315	-	AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene	0.0	0.0	
chr7	30485513	30485678	reg1006960.p2	6.044	+	TSC_hg19_v1_chr7_+_30324634 AY054122	-160939	+	TSC_hg19_v1_chr7_+_30324515 AF527533	-161046	+	AF513707 NM_147128	-161673	+	AY128682 AY128683 AY128684 AY128685 AY128686 AF113925 BC040339 AK300367 AK023969 NM_006092	32726	-	CU674304 TSC_hg19_v1_chr7_-_30544445 BC013937 BC005356 AK315608 BC019243 BC000625 NM_001199815 NM_001199816 NM_001199817 NM_024051	58806	-	NM_002047	148585	+	AY054122|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AY128682|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128683|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128684|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128685|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128686|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AF113925|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC040339|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK300367|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK023969|NOD1|10392|nucleotide-binding oligomerization domain containing 1##NM_006092|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC013937|GGCT|79017|gamma-glutamylcyclotransferase##BC005356|GGCT|79017|gamma-glutamylcyclotransferase##AK315608|GGCT|79017|gamma-glutamylcyclotransferase##BC019243|GGCT|79017|gamma-glutamylcyclotransferase##BC000625|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199815|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199816|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199817|GGCT|79017|gamma-glutamylcyclotransferase##NM_024051|GGCT|79017|gamma-glutamylcyclotransferase##NM_002047|GARS|2617|glycyl-tRNA synthetase	0.0	0.0	
chr12	120549474	120549603	reg1008698.p1	6.043	+	TSC_hg19_v1_chr12_+_120427616 AK129960 NM_207311 U88834	-121940	+	TSC_hg19_v1_chr12_-_120315112 AY209000 AY257469 BC008127 AY681966 NM_001206999 NM_007174	-234445	-	AK123136 TSC_hg19_v1_chr12_-_120241305	-308241	-	AF498960 BT020024 CR536486 CR541683 CU677517 DQ890586 DQ890603 DQ893750 AB528529 TSC_hg19_v1_chr12_-_120554547 X79781 AK304620	4963	-	TSC_hg19_v1_chr12_-_120554551 AK312538	5015	-	BC015931 TSC_hg19_v1_chr12_-_120554557	5019	-	AK129960|CCDC64|92558|coiled-coil domain containing 64##NM_207311|CCDC64|92558|coiled-coil domain containing 64##U88834|CCDC64|92558|coiled-coil domain containing 64##AY209000|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY257469|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##BC008127|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY681966|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_001206999|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_007174|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK123136|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AF498960|RAB35|11021|RAB35, member RAS oncogene family##BT020024|RAB35|11021|RAB35, member RAS oncogene family##CR536486|RAB35|11021|RAB35, member RAS oncogene family##CR541683|RAB35|11021|RAB35, member RAS oncogene family##DQ890586|RAB35|11021|RAB35, member RAS oncogene family##DQ890603|RAB35|11021|RAB35, member RAS oncogene family##DQ893750|RAB35|11021|RAB35, member RAS oncogene family##X79781|RAB35|11021|RAB35, member RAS oncogene family##AK304620|RAB35|11021|RAB35, member RAS oncogene family##AK312538|RAB35|11021|RAB35, member RAS oncogene family##BC015931|RAB35|11021|RAB35, member RAS oncogene family	0.044737	0.0	
chr2	146402684	146402864	reg1003040.p2	6.043	+	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	-1124853	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	-1125143	-	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-1127571	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	2199343	+	TSC_hg19_v1_chr2_+_148602300 AK314124	2199561	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	2199871	+	AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA	0.529693	0.0	denovo_WM_7:25:0.392
chr19	1929713	1929893	reg1003197.p2	6.042	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	-24398	+	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	-24451	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-44299	-	TSC_hg19_v1_chr19_+_1941164 NM_001319	11360	+	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	11385	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	85867	-	AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2	1.947924	0.0	denovo_WM_7:-77:0.774
chr19	35868625	35868756	reg1006670.p1	6.042	+	AK290710 NM_005304 BC035657	-19196	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	-26240	+	TSC_hg19_v1_chr19_+_35820089 NM_001185099 NM_001185100 NM_001185101 NM_001771 AK026467 AK225625 AK225694 AK301177 X59350 BC109307	-48599	+	AB378083 AB464537 BC096198 BC096199 BC096200 BC096201 NM_005306 BC095535	71927	+	AM392574 AM392667 AM392672 AM392738 AM392847 AM392851 AM393397 AM393477 AY359007 HQ258707 BC130501 NM_001244847 NM_207392	112698	-	AY622964 AY789707 AF086315 AL832080 NM_001035516	124115	-	AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3##NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##NM_001185099|CD22|933|CD22 molecule##NM_001185100|CD22|933|CD22 molecule##NM_001185101|CD22|933|CD22 molecule##NM_001771|CD22|933|CD22 molecule##AK026467|CD22|933|CD22 molecule##AK225625|CD22|933|CD22 molecule##AK225694|CD22|933|CD22 molecule##AK301177|CD22|933|CD22 molecule##X59350|CD22|933|CD22 molecule##BC109307|CD22|933|CD22 molecule##AB378083|FFAR2|2867|free fatty acid receptor 2##BC096198|FFAR2|2867|free fatty acid receptor 2##BC096199|FFAR2|2867|free fatty acid receptor 2##BC096200|FFAR2|2867|free fatty acid receptor 2##BC096201|FFAR2|2867|free fatty acid receptor 2##NM_005306|FFAR2|2867|free fatty acid receptor 2##BC095535|FFAR2|2867|free fatty acid receptor 2##AM392574|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392667|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392672|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392738|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392847|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392851|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393397|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393477|KRTDAP|388533|keratinocyte differentiation-associated protein##AY359007|KRTDAP|388533|keratinocyte differentiation-associated protein##HQ258707|KRTDAP|388533|keratinocyte differentiation-associated protein##BC130501|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_001244847|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_207392|KRTDAP|388533|keratinocyte differentiation-associated protein##AY622964|DMKN|93099|dermokine##AY789707|DMKN|93099|dermokine##AF086315|DMKN|93099|dermokine##AL832080|DMKN|93099|dermokine##NM_001035516|DMKN|93099|dermokine	1.082387	0.0	
chr9	37994756	37994868	reg1006986.p1	6.042	+	TSC_hg19_v1_chr9_-_37904351 AK098185 NM_033412	-90446	-	AK091407 AX746962 TSC_hg19_v1_chr9_-_37904125 BC008500 BC063563	-90683	-	TSC_hg19_v1_chr9_+_37800815 BC108686	-194004	+	BC136581 BC136582 TSC_hg19_v1_chr9_-_38069194	74329	-	X75342 NM_003028 TSC_hg19_v1_chr9_-_38069225 BC094765	74429	-	TSC_hg19_v1_chr9_+_38392669 NM_000692	397861	+	AK098185|MCART1|92014|mitochondrial carrier triple repeat 1##NM_033412|MCART1|92014|mitochondrial carrier triple repeat 1##AK091407|MCART1|92014|mitochondrial carrier triple repeat 1##BC008500|MCART1|92014|mitochondrial carrier triple repeat 1##BC063563|MCART1|92014|mitochondrial carrier triple repeat 1##BC108686|DCAF10|79269|DDB1 and CUL4 associated factor 10##BC136581|SHB|6461|Src homology 2 domain containing adaptor protein B##BC136582|SHB|6461|Src homology 2 domain containing adaptor protein B##X75342|SHB|6461|Src homology 2 domain containing adaptor protein B##NM_003028|SHB|6461|Src homology 2 domain containing adaptor protein B##NM_000692|ALDH1B1|219|aldehyde dehydrogenase 1 family, member B1	0.859857	0.0	denovo_WM_7:-9:0.547
chr7	43769153	43769333	reg1007304.p2	6.041	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	-149	-	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	-146549	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-617017	+	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	29024	+	TSC_hg19_v1_chr7_+_43798283 AK291862 X93086 U34877	29073	+	AF161453 CU680250 BC012167 TSC_hg19_v1_chr7_-_43909107 AK054982 BC054865 NM_032014	139873	-	BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A##AK291862|BLVRA|644|biliverdin reductase A##X93086|BLVRA|644|biliverdin reductase A##U34877|BLVRA|644|biliverdin reductase A##AF161453|MRPS24|64951|mitochondrial ribosomal protein S24##BC012167|MRPS24|64951|mitochondrial ribosomal protein S24##BC054865|MRPS24|64951|mitochondrial ribosomal protein S24##NM_032014|MRPS24|64951|mitochondrial ribosomal protein S24	0.9995	0.0	denovo_WM_7:98:0.783
chr8	119903877	119904033	reg1007219.p1	6.041	+	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	-269748	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	-269830	-	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-779994	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	60265	-	AK291791 NM_006438 BC103815 BC103816 AY359038 AB002631	175514	+	TSC_hg19_v1_chr8_+_120220616 BC012367 NM_052886 AY007723 AK172820 AK312030 DQ890584 DQ893743	316684	+	NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK291791|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##NM_006438|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103815|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103816|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AY359038|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AB002631|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC012367|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_052886|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AY007723|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK172820|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK312030|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ890584|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ893743|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)	0.997171	0.0	denovo_WM_7:14:0.976
chr11	7374360	7374499	reg1007004.p2	6.040	+	AK055003 AB527847 CU692338 TSC_hg19_v1_chr11_+_7273475	-100992	+	TSC_hg19_v1_chr11_+_7273164 BC046367 NM_175733 AK315013	-101236	+	NM_014469 AK292271 AF069682 BC057796 BC029295 AB527964	-264172	+	NM_198474 BX647908 BC092488 TSC_hg19_v1_chr11_+_7506763 AK298137 BC035895 AK297778	132288	+	NM_003621 BC021714 TSC_hg19_v1_chr11_+_7535171	160674	+	TSC_hg19_v1_chr11_+_7535229 AK001131 AK308398	160814	+	AK055003|SYT9|143425|synaptotagmin IX##BC046367|SYT9|143425|synaptotagmin IX##NM_175733|SYT9|143425|synaptotagmin IX##AK315013|SYT9|143425|synaptotagmin IX##NM_014469|RBMXL2|27288|RNA binding motif protein, X-linked-like 2##AK292271|RBMXL2|27288|RNA binding motif protein, X-linked-like 2##AF069682|RBMXL2|27288|RNA binding motif protein, X-linked-like 2##BC057796|RBMXL2|27288|RNA binding motif protein, X-linked-like 2##BC029295|RBMXL2|27288|RNA binding motif protein, X-linked-like 2##NM_198474|OLFML1|283298|olfactomedin-like 1##BX647908|OLFML1|283298|olfactomedin-like 1##BC092488|OLFML1|283298|olfactomedin-like 1##AK298137|OLFML1|283298|olfactomedin-like 1##BC035895|OLFML1|283298|olfactomedin-like 1##AK297778|OLFML1|283298|olfactomedin-like 1##NM_003621|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##BC021714|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##AK001131|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)##AK308398|PPFIBP2|8495|PTPRF interacting protein, binding protein 2 (liprin beta 2)	0.0	0.887871	CTCF.p2:-7:0.888
chr12	27459259	27459373	reg1006231.p2	6.040	+	TSC_hg19_v1_chr12_+_27397225 AK304755	-62091	+	TSC_hg19_v1_chr12_+_27397187 AK291055	-62129	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	-62192	+	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	26563	+	BC043511 TSC_hg19_v1_chr12_-_27599649	140288	-	NM_001145010	160426	+	AK304755|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70	0.191531	0.901644	CTCF.p2:24:0.902
chr16	15497560	15497678	reg1005553.p2	6.040	+	TSC_hg19_v1_chr16_+_15489637 AK096918 AK293380 BC061514	-7969	+	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	-8018	+	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	-309491	-	AK057180 NM_033201 TSC_hg19_v1_chr16_+_15528363 AK293431 BC008967	30781	+	BC023603 NM_001142469	98503	+	BC137165 BC137170 BC144514 BC144515 TSC_hg19_v1_chr16_-_15737004 AK302667 AK095840 BC064914 NM_001184998 NM_001184999 NM_014647	239374	-	AK096918|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK293380|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC061514|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK057180|C16orf45|89927|chromosome 16 open reading frame 45##NM_033201|C16orf45|89927|chromosome 16 open reading frame 45##AK293431|C16orf45|89927|chromosome 16 open reading frame 45##BC008967|C16orf45|89927|chromosome 16 open reading frame 45##BC023603|C16orf45|89927|chromosome 16 open reading frame 45##NM_001142469|C16orf45|89927|chromosome 16 open reading frame 45##BC137165|KIAA0430|9665|KIAA0430##BC137170|KIAA0430|9665|KIAA0430##BC144514|KIAA0430|9665|KIAA0430##BC144515|KIAA0430|9665|KIAA0430##AK302667|KIAA0430|9665|KIAA0430##AK095840|KIAA0430|9665|KIAA0430##BC064914|KIAA0430|9665|KIAA0430##NM_001184998|KIAA0430|9665|KIAA0430##NM_001184999|KIAA0430|9665|KIAA0430##NM_014647|KIAA0430|9665|KIAA0430	1.088172	0.0	
chr2	197107268	197107428	reg1005404.p2	6.040	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-71030	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-71069	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-173853	-	BC117194 BC117198 AB037722 NM_020760	349944	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	397009	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	557065	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.99968	0.0	
chr9	115480343	115480517	reg1008167.p2	6.040	+	TSC_hg19_v1_chr9_-_115480398 BC065210 AK310007 BC014881 NM_021218 AK000637	-42	-	AF161411 TSC_hg19_v1_chr9_-_115480339 AF161409	-92	-	TSC_hg19_v1_chr9_+_115336888 AK056181	-143500	+	TSC_hg19_v1_chr9_+_115513056 NM_001012994	32661	+	TSC_hg19_v1_chr9_+_115631819 AK129991	151435	+	CU690566 BC048285 AK314414 AK055571 AF242557 NM_033051	172646	-	BC065210|C9orf80|58493|chromosome 9 open reading frame 80##AK310007|C9orf80|58493|chromosome 9 open reading frame 80##BC014881|C9orf80|58493|chromosome 9 open reading frame 80##NM_021218|C9orf80|58493|chromosome 9 open reading frame 80##AK000637|C9orf80|58493|chromosome 9 open reading frame 80##AF161411|C9orf80|58493|chromosome 9 open reading frame 80##AF161409|C9orf80|58493|chromosome 9 open reading frame 80##AK056181|KIAA1958|158405|KIAA1958##NM_001012994|SNX30|401548|sorting nexin family member 30##AK129991|SNX30|401548|sorting nexin family member 30##BC048285|SLC46A2|57864|solute carrier family 46, member 2##AK314414|SLC46A2|57864|solute carrier family 46, member 2##AK055571|SLC46A2|57864|solute carrier family 46, member 2##AF242557|SLC46A2|57864|solute carrier family 46, member 2##NM_033051|SLC46A2|57864|solute carrier family 46, member 2	0.0	0.0	
chr12	54422114	54422231	reg1007770.p2	6.039	+	BC034922 BC044635 M16938 TSC_hg19_v1_chr12_+_54410917 AK314829	-11248	+	NM_014620 NM_153693 TSC_hg19_v1_chr12_+_54410671 X07495	-11495	+	TSC_hg19_v1_chr12_+_54402796 BC053898 NM_022658 AK290959	-19326	+	NM_004503 S82986 BC074844 BC074845 AB587587 CR456954	77	+	NM_018953 AB463752	4694	+	BC050442 NM_153633 AB464580 CU690682 EU446482	25511	+	BC034922|HOXC5|3222|homeobox C5##BC044635|HOXC5|3222|homeobox C5##M16938|HOXC6|3223|homeobox C6##AK314829|HOXC6|3223|homeobox C6##NM_014620|HOXC4|3221|homeobox C4##NM_153693|HOXC6|3223|homeobox C6##X07495|HOXC4|3221|homeobox C4##BC053898|HOXC8|3224|homeobox C8##NM_022658|HOXC8|3224|homeobox C8##AK290959|HOXC8|3224|homeobox C8##NM_004503|HOXC6|3223|homeobox C6##S82986|HOXC6|3223|homeobox C6##BC074844|HOXC6|3223|homeobox C6##BC074845|HOXC6|3223|homeobox C6##CR456954|HOXC6|3223|homeobox C6##NM_018953|HOXC5|3222|homeobox C5##BC050442|HOXC4|3221|homeobox C4##NM_153633|HOXC4|3221|homeobox C4##EU446482|HOXC6|3223|homeobox C6	0.0	0.0	
chr12	66377547	66377631	reg1009190.p1	6.039	+	TSC_hg19_v1_chr12_+_66218882 JF268496 S80262 GQ272323 AF533652 AF533653 AF533654	-158576	+	TSC_hg19_v1_chr12_+_66218605 AK311399	-158982	+	TSC_hg19_v1_chr12_+_66218262 AY601861 AY601862 AY601863 AY601864 AY601865 AY601866 AY601867 NM_003483 NM_003484 U28749 Z31595	-159382	+	TSC_hg19_v1_chr12_-_66524536 BC070232 BC006002 BC107780 AK091568 AX747065 NM_032338	146936	-	AB464309 TSC_hg19_v1_chr12_-_66563773 AF182414 AF161526 BC020613 AF113127 AK301359 AF182041 AK075069 AK225158 BC070366 BC052273 BC094852	186165	-	TSC_hg19_v1_chr12_-_66563806 BC004401 NM_016056	186213	-	AF533652|HMGA2|8091|high mobility group AT-hook 2##AF533653|HMGA2|8091|high mobility group AT-hook 2##AF533654|HMGA2|8091|high mobility group AT-hook 2##AK311399|HMGA2|8091|high mobility group AT-hook 2##AY601861|HMGA2|8091|high mobility group AT-hook 2##AY601862|HMGA2|8091|high mobility group AT-hook 2##AY601863|HMGA2|8091|high mobility group AT-hook 2##AY601864|HMGA2|8091|high mobility group AT-hook 2##AY601865|HMGA2|8091|high mobility group AT-hook 2##AY601866|HMGA2|8091|high mobility group AT-hook 2##AY601867|HMGA2|8091|high mobility group AT-hook 2##NM_003483|HMGA2|8091|high mobility group AT-hook 2##NM_003484|HMGA2|8091|high mobility group AT-hook 2##U28749|HMGA2|8091|high mobility group AT-hook 2##Z31595|HMGA2|8091|high mobility group AT-hook 2##BC070232|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##BC006002|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##BC107780|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##AK091568|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##NM_032338|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##AF182414|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF161526|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC020613|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF113127|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF182041|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AK075069|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AK225158|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC070366|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC052273|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC094852|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC004401|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##NM_016056|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4	0.0	0.986026	CTCF.p2:30:0.986
chr18	3527321	3527447	reg1005243.p2	6.039	+	NM_173211	-73613	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-75753	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-77304	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	66758	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	317946	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	346900	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.999576	0.0	
chr19	10493759	10493918	reg1007699.p1	6.037	+	TSC_hg19_v1_chr19_-_10491245 AK308360 NM_003331 AK303627 AK308379	-2559	-	TSC_hg19_v1_chr19_-_10491192 X54637 AK222672 BC014243	-2647	-	AF340060 AF340061 AB463787 BC040123 S50015 AK309643 BC058903 X69819 TSC_hg19_v1_chr19_-_10450307 AK301071 AX746321 X69711 BC034409 BC046121 AK312826 AK226023 NM_002162	-43529	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	20331	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	20375	-	TSC_hg19_v1_chr19_-_10514250 NM_007065	20418	-	AK308360|TYK2|7297|tyrosine kinase 2##NM_003331|TYK2|7297|tyrosine kinase 2##AK303627|TYK2|7297|tyrosine kinase 2##AK308379|TYK2|7297|tyrosine kinase 2##X54637|TYK2|7297|tyrosine kinase 2##AK222672|TYK2|7297|tyrosine kinase 2##BC014243|TYK2|7297|tyrosine kinase 2##AF340060|ICAM3|3385|intercellular adhesion molecule 3##AF340061|ICAM3|3385|intercellular adhesion molecule 3##BC040123|ICAM3|3385|intercellular adhesion molecule 3##S50015|ICAM3|3385|intercellular adhesion molecule 3##AK309643|ICAM3|3385|intercellular adhesion molecule 3##BC058903|ICAM3|3385|intercellular adhesion molecule 3##X69819|ICAM3|3385|intercellular adhesion molecule 3##AX746321|ICAM3|3385|intercellular adhesion molecule 3##X69711|ICAM3|3385|intercellular adhesion molecule 3##BC034409|ICAM3|3385|intercellular adhesion molecule 3##BC046121|ICAM3|3385|intercellular adhesion molecule 3##AK312826|ICAM3|3385|intercellular adhesion molecule 3##AK226023|ICAM3|3385|intercellular adhesion molecule 3##NM_002162|ICAM3|3385|intercellular adhesion molecule 3##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)	0.989571	0.0	denovo_WM_7:3:0.713
chr21	14713117	14713240	reg1008183.p2	6.037	+	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	-3614279	-	AK308254 AK314285 TSC_hg19_v1_chr21_-_10990898 AF007118 AF495908 AY219886 AY219887 AY219888 AL833345 BC028719 NM_199259 NM_199260 NM_199261	-3722280	-	None	None	None	AY172978 NM_174981 AY465173	269321	+	TSC_hg19_v1_chr21_+_15399763 BC070147 BC024173 BC048201	686586	+	AB463838 AY197607 NM_198996	866070	-	BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AK308254|TPTE|7179|transmembrane phosphatase with tensin homology##AK314285|TPTE|7179|transmembrane phosphatase with tensin homology##AF007118|TPTE|7179|transmembrane phosphatase with tensin homology##AF495908|TPTE|7179|transmembrane phosphatase with tensin homology##AY219886|TPTE|7179|transmembrane phosphatase with tensin homology##AY219887|TPTE|7179|transmembrane phosphatase with tensin homology##AY219888|TPTE|7179|transmembrane phosphatase with tensin homology##AL833345|TPTE|7179|transmembrane phosphatase with tensin homology##BC028719|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199259|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199260|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199261|TPTE|7179|transmembrane phosphatase with tensin homology##AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I	0.783451	0.014948	denovo_WM_7:-18:0.452
chr2	225411103	225411248	reg1006867.p1	6.037	+	U58089 TSC_hg19_v1_chr2_-_225378353	-32839	-	AF052147 BC031844 TSC_hg19_v1_chr2_-_225370764	-40447	-	BC025754 NM_001122779 NM_024785 AK026399	-144445	-	AK299644 AK291151 AF064087 AF062537 TSC_hg19_v1_chr2_-_225449842	38608	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	38866	-	TSC_hg19_v1_chr2_-_225450056 BC039598	38900	-	U58089|CUL3|8452|cullin 3##AF052147|CUL3|8452|cullin 3##BC031844|CUL3|8452|cullin 3##BC025754|FAM124B|79843|family with sequence similarity 124B##NM_001122779|FAM124B|79843|family with sequence similarity 124B##NM_024785|FAM124B|79843|family with sequence similarity 124B##AK026399|FAM124B|79843|family with sequence similarity 124B##AK299644|CUL3|8452|cullin 3##AK291151|CUL3|8452|cullin 3##AF064087|CUL3|8452|cullin 3##AF062537|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3	0.327433	0.0	
chr3	61546613	61546735	reg1006403.p2	6.037	+	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	-309584	-	BC050317 TSC_hg19_v1_chr3_-_59035759	-2510914	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-2510933	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	537	+	BC047734 TSC_hg19_v1_chr3_+_61547294	612	+	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	1302	+	BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	0.979348	0.0	denovo_WM_7:-19:0.340	denovo_WM_7:-21:0.339
chr10	120879176	120879313	reg1001611.p1	6.036	+	TSC_hg19_v1_chr10_+_120863628 AF168713 AK000031 AK297633 AK297971 AK293136 BC022271 CU687018 CU692524	-15604	+	NM_207009 TSC_hg19_v1_chr10_+_120863621	-15627	+	TSC_hg19_v1_chr10_+_120863593 AK293365	-15664	+	CU687762 AY269785 TSC_hg19_v1_chr10_-_120925213 AK095295 BC063562 BC050475 NM_213649	45943	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	59059	-	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	59103	-	AF168713|FAM45A|404636|family with sequence similarity 45, member A##AK000031|FAM45A|404636|family with sequence similarity 45, member A##AK297633|FAM45A|404636|family with sequence similarity 45, member A##AK297971|FAM45B|55855|family with sequence similarity 45, member A pseudogene##AK293136|FAM45A|404636|family with sequence similarity 45, member A##BC022271|FAM45A|404636|family with sequence similarity 45, member A##NM_207009|FAM45A|404636|family with sequence similarity 45, member A##AK293365|FAM45A|404636|family with sequence similarity 45, member A##AY269785|SFXN4|119559|sideroflexin 4##AK095295|SFXN4|119559|sideroflexin 4##BC063562|SFXN4|119559|sideroflexin 4##BC050475|SFXN4|119559|sideroflexin 4##NM_213649|SFXN4|119559|sideroflexin 4##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3	0.992837	0.0	denovo_WM_7:-1:0.314	denovo_WM_7:-2:0.314	denovo_WM_7:-3:0.314
chr12	110855087	110855252	reg1007905.p1	6.035	+	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	-13658	-	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	-13730	-	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-135801	+	TSC_hg19_v1_chr12_-_110888079 AF006086	32916	-	BC078162 TSC_hg19_v1_chr12_-_110888104	32932	-	TSC_hg19_v1_chr12_-_110888123 BC067747 AL357196	32949	-	BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##BC078162|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##BC067747|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	0.94818	0.0	denovo_WM_7:-41:0.500
chr12	123964646	123964767	reg1007575.p2	6.035	+	BC093671 BC111955 NM_180699	-20321	+	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	-22003	+	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	-43465	-	BC089444 TSC_hg19_v1_chr12_-_124018263 NM_178314	53468	-	TSC_hg19_v1_chr12_-_124018501 AK096697	53791	-	TSC_hg19_v1_chr12_-_124068867 AK125282	104169	-	BC093671|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC111955|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##NM_180699|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC089444|RILPL1|353116|Rab interacting lysosomal protein-like 1##NM_178314|RILPL1|353116|Rab interacting lysosomal protein-like 1##AK096697|RILPL1|353116|Rab interacting lysosomal protein-like 1	0.994806	0.0	
chr16	57367420	57367552	reg1006971.p1	6.035	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-48907	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-48975	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-88353	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	25224	+	AK222692 TSC_hg19_v1_chr16_+_57406382	38899	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	38953	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	0.900014	0.0	denovo_WM_7:12:0.882
chr17	63563597	63563747	reg1004923.p1	6.035	+	CR933657 TSC_hg19_v1_chr17_-_63557767	-5904	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	-5993	-	BC006295 TSC_hg19_v1_chr17_-_63556453	-7197	-	BC029524 NM_001037325	258988	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	624509	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	661853	-	CR933657|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##BC006295|AXIN2|8313|axin 2##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)	0.997523	0.0	denovo_WM_7:16:0.493	denovo_WM_7:17:0.493
chr3	185277353	185277472	reg1006836.p2	6.035	+	CU687970 TSC_hg19_v1_chr3_-_185270374 AK298380 AY036912 AY093498 EF186228 EF186229 BC064941 AK122651 NM_139248	-7084	-	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	-60713	-	BC026249 NM_004721 AK296961 AB001872 BC111726	-196480	+	AK304402 TSC_hg19_v1_chr3_+_185304106 AF151697 NM_021627 AK296772 AK027599 AK296744 BC040609 CU691906 AB037752 AB385449 AL834380	26671	+	CU676908 DQ892161 EU176689 TSC_hg19_v1_chr3_-_185542803 AK309611 AF117107 BC012322	265362	-	TSC_hg19_v1_chr3_-_185542828 BC021290 AK290664 NM_001007225 NM_006548	265419	-	AK298380|LIPH|200879|lipase, member H##AY036912|LIPH|200879|lipase, member H##AY093498|LIPH|200879|lipase, member H##EF186228|LIPH|200879|lipase, member H##EF186229|LIPH|200879|lipase, member H##BC064941|LIPH|200879|lipase, member H##AK122651|LIPH|200879|lipase, member H##NM_139248|LIPH|200879|lipase, member H##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK304402|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AF151697|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##NM_021627|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296772|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK027599|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296744|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##BC040609|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AL834380|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##DQ892161|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##EU176689|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK309611|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AF117107|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##BC021290|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK290664|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##NM_001007225|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##NM_006548|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2	0.991747	0.0	
chr1	3594216	3594366	reg1007652.p2	6.034	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-25165	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-27675	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-52682	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	12967	+	AK310432 NM_001204192 AK302118	20324	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	69626	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	0.998943	0.0	
chr2	101070639	101070819	reg1004576.p2	6.034	+	TSC_hg19_v1_chr2_-_101034114 BC010441 AF033827 NM_004854	-36632	-	DQ020495 NM_198461	-131535	-	BC036895 TSC_hg19_v1_chr2_-_100759026 NM_002285	-311726	-	AB164464 NM_001011717	16214	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	108707	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	366037	+	BC010441|CHST10|9486|carbohydrate sulfotransferase 10##AF033827|CHST10|9486|carbohydrate sulfotransferase 10##NM_004854|CHST10|9486|carbohydrate sulfotransferase 10##DQ020495|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##NM_198461|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##BC036895|AFF3|3899|AF4/FMR2 family, member 3##NM_002285|AFF3|3899|AF4/FMR2 family, member 3##AB164464|NMS|129521|neuromedin S##NM_001011717|NMS|129521|neuromedin S##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2	1.261324	0.0	denovo_WM_7:48:0.721
chr4	96471149	96471297	reg1009651.p1	6.034	+	BC034747 BC041156 TSC_hg19_v1_chr4_-_96470369 NM_003728	-847	-	TSC_hg19_v1_chr4_-_96470125 AK308421 AF055634 AK290500	-1044	-	TSC_hg19_v1_chr4_+_95679109 NM_001203 U89326	-792117	+	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	290035	+	CU691442 BC036870 NM_174952	2593122	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	2711371	+	BC034747|UNC5C|8633|unc-5 homolog C (C. elegans)##BC041156|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_003728|UNC5C|8633|unc-5 homolog C (C. elegans)##AK308421|UNC5C|8633|unc-5 homolog C (C. elegans)##AF055634|UNC5C|8633|unc-5 homolog C (C. elegans)##AK290500|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_001203|BMPR1B|658|bone morphogenetic protein receptor, type IB##U89326|BMPR1B|658|bone morphogenetic protein receptor, type IB##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1	0.247153	0.0	denovo_WM_7:16:0.236
chr7	81863892	81864016	reg1006585.p2	6.034	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-464580	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1315280	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1315520	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	208892	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	209126	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	927915	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	0.0	0.628115	CTCF.p2:2:0.628
chr19	2292347	2292437	reg1007270.p2	6.033	+	TSC_hg19_v1_chr19_+_2289998 AK091795 AX747191	-2395	+	AK127680 BC107678 NM_198532	-10215	-	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	-22850	+	NM_001101391	15763	-	BC018621 AF182293 TSC_hg19_v1_chr19_-_2328581 AK092837 AX747757 NM_016199	36197	-	BC093046 NM_001077238 NM_152988 TSC_hg19_v1_chr19_+_2328668	36258	+	AK127680|C19orf35|374872|chromosome 19 open reading frame 35##BC107678|C19orf35|374872|chromosome 19 open reading frame 35##NM_198532|C19orf35|374872|chromosome 19 open reading frame 35##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_001101391|LINGO3|645191|leucine rich repeat and Ig domain containing 3##BC018621|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182293|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_016199|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC093046|SPPL2B|56928|signal peptide peptidase-like 2B##NM_001077238|SPPL2B|56928|signal peptide peptidase-like 2B##NM_152988|SPPL2B|56928|signal peptide peptidase-like 2B	1.803305	0.0	denovo_WM_7:84:0.207	denovo_WM_7:85:0.481
chr8	97607668	97607780	reg1008060.p2	6.033	+	TSC_hg19_v1_chr8_+_97506496 HQ257944	-101228	+	TSC_hg19_v1_chr8_+_97506146 BC049836	-101568	+	TSC_hg19_v1_chr8_+_97506071 AK074530	-101641	+	TSC_hg19_v1_chr8_+_97657537 BC020689 NM_016134 AK075132 AK304008 AK315447	49770	+	TSC_hg19_v1_chr8_+_97657589 AK296013	49862	+	TSC_hg19_v1_chr8_+_97657592 AF107834	49878	+	HQ257944|SDC2|6383|syndecan 2##BC049836|SDC2|6383|syndecan 2##AK074530|SDC2|6383|syndecan 2##BC020689|PGCP|10404|plasma glutamate carboxypeptidase##NM_016134|PGCP|10404|plasma glutamate carboxypeptidase##AK075132|PGCP|10404|plasma glutamate carboxypeptidase##AK304008|PGCP|10404|plasma glutamate carboxypeptidase##AK315447|PGCP|10404|plasma glutamate carboxypeptidase##AK296013|PGCP|10404|plasma glutamate carboxypeptidase##AF107834|PGCP|10404|plasma glutamate carboxypeptidase	0.995286	0.0	denovo_WM_7:16:0.934
chr13	109814694	109814874	reg1001547.p1	6.032	+	AB290159 AK127806 NM_001198950	-533215	+	AB020672 BC146791 NM_015011 AL834447	-566270	+	DQ857728 TSC_hg19_v1_chr13_+_108955871	-858967	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	624124	-	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	987951	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	1144725	-	AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1	0.0	0.0	
chr1	35622543	35622675	reg1005745.p1	6.032	+	TSC_hg19_v1_chr1_+_35544986 AK096206 AK308655 CR936813 BC037313 BX537537 BX648307	-77595	+	TSC_hg19_v1_chr1_+_35544983 AK299779 NM_024772	-77644	+	TSC_hg19_v1_chr1_-_35497577 BC068534 NM_007167	-125010	-	BC004534 TSC_hg19_v1_chr1_-_35658589	35936	-	BC027717 TSC_hg19_v1_chr1_-_35658734 BC000546 BC027708 X70944 AK307985	36127	-	NM_005066 TSC_hg19_v1_chr1_-_35658747 BC051192	36136	-	AK096206|ZMYM1|79830|zinc finger, MYM-type 1##AK308655|ZMYM1|79830|zinc finger, MYM-type 1##CR936813|ZMYM1|79830|zinc finger, MYM-type 1##BC037313|ZMYM1|79830|zinc finger, MYM-type 1##BX537537|ZMYM1|79830|zinc finger, MYM-type 1##BX648307|ZMYM1|79830|zinc finger, MYM-type 1##AK299779|ZMYM1|79830|zinc finger, MYM-type 1##NM_024772|ZMYM1|79830|zinc finger, MYM-type 1##BC068534|ZMYM6|9204|zinc finger, MYM-type 6##NM_007167|ZMYM6|9204|zinc finger, MYM-type 6##BC004534|SFPQ|6421|splicing factor proline/glutamine-rich##BC027717|SFPQ|6421|splicing factor proline/glutamine-rich##BC000546|SFPQ|6421|splicing factor proline/glutamine-rich##BC027708|SFPQ|6421|splicing factor proline/glutamine-rich##X70944|SFPQ|6421|splicing factor proline/glutamine-rich##AK307985|SFPQ|6421|splicing factor proline/glutamine-rich##NM_005066|SFPQ|6421|splicing factor proline/glutamine-rich##BC051192|SFPQ|6421|splicing factor proline/glutamine-rich	0.994344	0.0	
chr17	76777266	76777434	reg1004979.p2	6.031	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-44352	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-57599	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-57703	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	1003	-	BC071582 TSC_hg19_v1_chr17_-_76836610	59300	-	TSC_hg19_v1_chr17_-_76836843 AK225426	59433	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	0.997288	0.0	
chr5	130710232	130710352	reg1002953.p1	6.031	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-110492	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-110524	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-110536	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	260465	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	260527	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	260586	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.999559	0.0	
chr7	148325776	148325910	reg1008520.p1	6.031	+	BC021251 NM_145304	-38187	+	TSC_hg19_v1_chr7_+_148036552 CR933671	-289278	+	AF319045 AK315113 TSC_hg19_v1_chr7_+_145813941	-2511959	+	TSC_hg19_v1_chr7_+_148395994 NM_003592 AK096163 AK296909	70097	+	TSC_hg19_v1_chr7_+_148396012 BX537409	70161	+	TSC_hg19_v1_chr7_+_148396016 BC125119 BC125120	70200	+	BC021251|C7orf33|202865|chromosome 7 open reading frame 33##NM_145304|C7orf33|202865|chromosome 7 open reading frame 33##CR933671|CNTNAP2|26047|contactin associated protein-like 2##AF319045|CNTNAP2|26047|contactin associated protein-like 2##AK315113|CNTNAP2|26047|contactin associated protein-like 2##NM_003592|CUL1|8454|cullin 1##AK096163|CUL1|8454|cullin 1##AK296909|CUL1|8454|cullin 1##BX537409|CUL1|8454|cullin 1##BC125119|CUL1|8454|cullin 1##BC125120|CUL1|8454|cullin 1	0.996967	0.0	denovo_WM_7:-56:0.971
chr9	35080175	35080355	reg1006657.p1	6.031	+	TSC_hg19_v1_chr9_-_35079753 BC011623 AK293427 AK312987 AJ007669 NM_004629	-384	-	BT009813 CU674000 AB464437 DQ892166 DQ895360 U70310 BC000032 TSC_hg19_v1_chr9_-_35079678 AK311348	-661	-	TSC_hg19_v1_chr9_-_35072646 NM_007126	-7575	-	NM_001201484 NM_032634 AK090433 TSC_hg19_v1_chr9_-_35096578 AK074064 NM_152850	16335	-	TSC_hg19_v1_chr9_-_35103065 AF161458	22799	-	TSC_hg19_v1_chr9_-_35103124 CU677964 DQ895920 DQ892677 BC003025 AK130546 AK308552 BC014990 AF282596 AK027405 AK225114 BC010152 AK307343 BC002442 AK303883 AK223102	22851	-	BC011623|FANCG|2189|Fanconi anemia, complementation group G##AK293427|FANCG|2189|Fanconi anemia, complementation group G##AK312987|FANCG|2189|Fanconi anemia, complementation group G##AJ007669|FANCG|2189|Fanconi anemia, complementation group G##NM_004629|FANCG|2189|Fanconi anemia, complementation group G##BT009813|FANCG|2189|Fanconi anemia, complementation group G##DQ892166|FANCG|2189|Fanconi anemia, complementation group G##DQ895360|FANCG|2189|Fanconi anemia, complementation group G##U70310|FANCG|2189|Fanconi anemia, complementation group G##BC000032|FANCG|2189|Fanconi anemia, complementation group G##AK311348|FANCG|2189|Fanconi anemia, complementation group G##NM_007126|VCP|7415|valosin containing protein##NM_001201484|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##NM_032634|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AK090433|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AK074064|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##NM_152850|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AF161458|STOML2|30968|stomatin (EPB72)-like 2##DQ895920|STOML2|30968|stomatin (EPB72)-like 2##DQ892677|STOML2|30968|stomatin (EPB72)-like 2##BC003025|STOML2|30968|stomatin (EPB72)-like 2##AK130546|STOML2|30968|stomatin (EPB72)-like 2##BC014990|STOML2|30968|stomatin (EPB72)-like 2##AF282596|STOML2|30968|stomatin (EPB72)-like 2##AK027405|STOML2|30968|stomatin (EPB72)-like 2##AK225114|STOML2|30968|stomatin (EPB72)-like 2##BC010152|STOML2|30968|stomatin (EPB72)-like 2##AK307343|STOML2|30968|stomatin (EPB72)-like 2##BC002442|STOML2|30968|stomatin (EPB72)-like 2##AK303883|STOML2|30968|stomatin (EPB72)-like 2##AK223102|STOML2|30968|stomatin (EPB72)-like 2	0.992566	0.0	
chr18	9082807	9082969	reg1009092.p1	6.030	+	AB384528 TSC_hg19_v1_chr18_+_8718600	-364364	+	AK131528 NM_015210	-365520	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	-473142	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	19734	+	TSC_hg19_v1_chr18_+_9102715 AK312129 BC001632 BC017487 M22538 AK291865 AB590136 BC071689 DQ892593 DQ895813 CR456928	19832	+	TSC_hg19_v1_chr18_+_9136811 NM_001083625 NM_015208 BC070234 AK024808 AY373757 BC057225 AL834204	53903	+	AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##AK312129|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC001632|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC017487|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##M22538|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##AK291865|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC071689|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##DQ892593|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##DQ895813|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##CR456928|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##NM_001083625|ANKRD12|23253|ankyrin repeat domain 12##NM_015208|ANKRD12|23253|ankyrin repeat domain 12##BC070234|ANKRD12|23253|ankyrin repeat domain 12##AK024808|ANKRD12|23253|ankyrin repeat domain 12##AY373757|ANKRD12|23253|ankyrin repeat domain 12##BC057225|ANKRD12|23253|ankyrin repeat domain 12##AL834204|ANKRD12|23253|ankyrin repeat domain 12	0.0	0.0	
chr16	50310797	50310977	reg1008333.p2	6.029	+	TSC_hg19_v1_chr16_+_50308041 BC039891	-2834	+	AK093706 TSC_hg19_v1_chr16_+_50300480 BC028085	-10411	+	TSC_hg19_v1_chr16_+_50186838 AK300918 NM_001040284 NM_001040285	-124052	+	NM_001114 D25538	10936	+	AB527472 AF213969 AF152604 AJ271881 TSC_hg19_v1_chr16_-_50402868 BC050728 NM_001173984 NM_013263 BC094706	91943	-	TSC_hg19_v1_chr16_+_50582303 BC051288 NM_033119 AK314930 AY061883 AF358135 AB062886	271439	+	BC039891|ADCY7|113|adenylate cyclase 7##AK093706|ADCY7|113|adenylate cyclase 7##AK300918|PAPD5|64282|PAP associated domain containing 5##NM_001040284|PAPD5|64282|PAP associated domain containing 5##NM_001040285|PAPD5|64282|PAP associated domain containing 5##NM_001114|ADCY7|113|adenylate cyclase 7##D25538|ADCY7|113|adenylate cyclase 7##AF213969|BRD7|29117|bromodomain containing 7##AF152604|BRD7|29117|bromodomain containing 7##AJ271881|BRD7|29117|bromodomain containing 7##BC050728|BRD7|29117|bromodomain containing 7##NM_001173984|BRD7|29117|bromodomain containing 7##NM_013263|BRD7|29117|bromodomain containing 7##BC094706|BRD7|29117|bromodomain containing 7##BC051288|NKD1|85407|naked cuticle homolog 1 (Drosophila)##NM_033119|NKD1|85407|naked cuticle homolog 1 (Drosophila)##AK314930|NKD1|85407|naked cuticle homolog 1 (Drosophila)##AY061883|NKD1|85407|naked cuticle homolog 1 (Drosophila)##AF358135|NKD1|85407|naked cuticle homolog 1 (Drosophila)##AB062886|NKD1|85407|naked cuticle homolog 1 (Drosophila)	0.9935	0.0	denovo_WM_7:-22:0.897
chr16	67514102	67514197	reg1004268.p1	6.029	+	TSC_hg19_v1_chr16_+_67465023 U26726 BC036780 BC064536 NM_000196 U14631	-49119	+	TSC_hg19_v1_chr16_-_67450360 NM_013304 U90653 BC021908	-63852	-	TSC_hg19_v1_chr16_-_67427402 AF132972 AF078846 BC000691 NM_015964 NM_016140	-86770	-	CU679153 DQ893270 DQ896601 X71490 TSC_hg19_v1_chr16_-_67515051 AK300570 AK313035 AK125522 BC008861 NM_004691	895	-	NM_001138 U88063	3566	-	TSC_hg19_v1_chr16_+_67562734 NM_024519 AK127792 NM_001193522 AK307467 BC012730	48592	+	U26726|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC036780|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC064536|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_000196|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##U14631|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_013304|ZDHHC1|29800|zinc finger, DHHC-type containing 1##U90653|ZDHHC1|29800|zinc finger, DHHC-type containing 1##BC021908|ZDHHC1|29800|zinc finger, DHHC-type containing 1##AF132972|TPPP3|51673|tubulin polymerization-promoting protein family member 3##AF078846|TPPP3|51673|tubulin polymerization-promoting protein family member 3##BC000691|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_015964|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_016140|TPPP3|51673|tubulin polymerization-promoting protein family member 3##DQ893270|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##DQ896601|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##X71490|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK300570|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK313035|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK125522|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##BC008861|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##NM_004691|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##NM_001138|AGRP|181|agouti related protein homolog (mouse)##U88063|AGRP|181|agouti related protein homolog (mouse)##NM_024519|FAM65A|79567|family with sequence similarity 65, member A##AK127792|FAM65A|79567|family with sequence similarity 65, member A##NM_001193522|FAM65A|79567|family with sequence similarity 65, member A##AK307467|FAM65A|79567|family with sequence similarity 65, member A	0.995428	0.0	
chr19	4381635	4381762	reg1005179.p2	6.029	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-38139	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-38948	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-42900	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	18695	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	18855	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	21018	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.998839	0.0	
chr9	129951308	129951401	reg1001910.p2	6.029	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-66324	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-66392	-	TSC_hg19_v1_chr9_-_129884914 AK074726 BC012368 AK307175	-66446	-	NM_032293 AK293732 AK095679	75453	+	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	208092	+	TSC_hg19_v1_chr9_-_130186602 AK124330	235212	-	NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##AK074726|ANGPTL2|23452|angiopoietin-like 2##BC012368|ANGPTL2|23452|angiopoietin-like 2##NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8	1.989926	0.0	denovo_WM_7:-55:0.972	denovo_WM_7:-70:0.982
chr12	1762311	1762453	reg1000232.p2	6.028	+	BC001749 NM_032642	-23971	+	AY009399 NM_030775	-36161	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	-59031	-	AK127196 TSC_hg19_v1_chr12_+_1800187	37784	+	TSC_hg19_v1_chr12_+_1800235 AK128511 AK127111 BC051858 NM_024551	37835	+	BC048288 TSC_hg19_v1_chr12_-_1920907 AK301234	158542	-	BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AK127196|ADIPOR2|79602|adiponectin receptor 2##AK128511|ADIPOR2|79602|adiponectin receptor 2##BC051858|ADIPOR2|79602|adiponectin receptor 2##NM_024551|ADIPOR2|79602|adiponectin receptor 2##BC048288|CACNA2D4|93589|calcium channel, voltage-dependent, alpha 2/delta subunit 4##AK301234|CACNA2D4|93589|calcium channel, voltage-dependent, alpha 2/delta subunit 4	0.248886	0.0	denovo_WM_7:7:0.213
chr2	61111231	61111351	reg1006595.p2	6.028	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	-2504	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	-2554	+	TSC_hg19_v1_chr2_+_61108702 AK303926	-2586	+	TSC_hg19_v1_chr2_-_61244326 AK291729 BC065197	133026	-	AK311426 NM_002618 TSC_hg19_v1_chr2_+_61244828	133478	+	TSC_hg19_v1_chr2_+_61244858 AK315244 AB022192 AF048755 BC067090 BC020547 BC040953 BC048804 BC035584 AB528913 CU688242 U71374	133583	+	BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK291729|PUS10|150962|pseudouridylate synthase 10##NM_002618|PEX13|5194|peroxisomal biogenesis factor 13##AK315244|PEX13|5194|peroxisomal biogenesis factor 13##AB022192|PEX13|5194|peroxisomal biogenesis factor 13##AF048755|PEX13|5194|peroxisomal biogenesis factor 13##BC067090|PEX13|5194|peroxisomal biogenesis factor 13##U71374|PEX13|5194|peroxisomal biogenesis factor 13	0.997567	0.0	denovo_WM_7:-46:0.310	denovo_WM_7:-47:0.310	denovo_WM_7:-48:0.310
chr4	175286409	175286560	reg1001978.p2	6.028	+	BC014903 NM_012180 AK123740	-81077	-	TSC_hg19_v1_chr4_+_175205073 NM_001145314 BC038667 AB051499 AK094961 AK292484	-81371	+	NM_001040157 TSC_hg19_v1_chr4_+_175204877	-81624	+	U63296 X82460 BC007691 BC018986 J05594 L76465 AK058013 AK300940 AK314624 AK300125 TSC_hg19_v1_chr4_-_175443639	157136	-	AK300524 NM_000860 NM_001145816	157307	-	U93917 BC036086 NM_001042543 NM_006529	463936	-	BC014903|FBXO8|26269|F-box protein 8##NM_012180|FBXO8|26269|F-box protein 8##AK123740|FBXO8|26269|F-box protein 8##NM_001145314|CEP44|80817|centrosomal protein 44kDa##BC038667|CEP44|80817|centrosomal protein 44kDa##AB051499|CEP44|80817|centrosomal protein 44kDa##AK094961|CEP44|80817|centrosomal protein 44kDa##AK292484|CEP44|80817|centrosomal protein 44kDa##NM_001040157|CEP44|80817|centrosomal protein 44kDa##U63296|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##X82460|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC007691|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC018986|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##J05594|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##L76465|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK058013|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300940|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK314624|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300125|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3	1.627593	0.0	
chr5	106715913	106716093	reg1003157.p1	6.028	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3817522	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4121546	+	BC024591 NM_015216 AB463068	-4250729	+	AK308672 NM_001962 U26403	290587	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1001127	-	BC063316 NM_001163315	1001795	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	1.990667	0.0	denovo_WM_7:80:0.209
chr5	55497031	55497182	reg1009117.p1	6.028	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-206343	-	NM_001242636 NM_001242639	-347957	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-349837	+	AK123389 NM_024669	32079	-	NM_005921	613793	+	TSC_hg19_v1_chr5_+_56111375 AK307828	614258	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.467376	CTCF.p2:30:0.467
chr6	21598240	21598420	reg1001916.p5	6.028	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-3958	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1063607	+	CR749285 NM_001243076	-1194297	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	68329	+	BC015850 NM_000948	699399	-	X54394 X54393 GQ305133 M58594 NM_001163558	704717	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.0	0.0	
chr15	91530221	91530401	reg1006328.p1	6.027	+	BC064606 BC113826 TSC_hg19_v1_chr15_+_91499981	-30336	+	TSC_hg19_v1_chr15_+_91498113 NM_001017919 NM_033544 BC140708 BC140709 BC094739	-32220	+	TSC_hg19_v1_chr15_+_91478539 AK000905 AK293538 BC037992 DQ892953 DQ896200 CU691534	-51757	+	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	7455	-	CU677627 TSC_hg19_v1_chr15_-_91565525	35191	-	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	35459	-	BC064606|RCCD1|91433|RCC1 domain containing 1##BC113826|RCCD1|91433|RCC1 domain containing 1##NM_001017919|RCCD1|91433|RCC1 domain containing 1##NM_033544|RCCD1|91433|RCC1 domain containing 1##BC140708|RCCD1|91433|RCC1 domain containing 1##BC140709|RCCD1|91433|RCC1 domain containing 1##BC094739|RCCD1|91433|RCC1 domain containing 1##AK000905|UNC45A|55898|unc-45 homolog A (C. elegans)##AK293538|UNC45A|55898|unc-45 homolog A (C. elegans)##BC037992|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ892953|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ896200|UNC45A|55898|unc-45 homolog A (C. elegans)##AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)	0.997253	0.0	
chr19	2055047	2055168	reg1004419.p1	6.027	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-3874	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-8866	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-13057	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	30136	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	41158	-	TSC_hg19_v1_chr19_-_2096297 AL832474	41187	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	0.996888	0.0	
chr20	36720706	36720860	reg1006213.p1	6.027	+	TSC_hg19_v1_chr20_+_36662228 AB463518 CU689672	-58506	+	TSC_hg19_v1_chr20_+_36662168 BC033629 AK312468 BC001696	-58616	+	TSC_hg19_v1_chr20_+_36661917 NM_021215 DQ372938	-58822	+	TSC_hg19_v1_chr20_-_36758362 M98479	37608	-	TSC_hg19_v1_chr20_-_36793673 AK291714 AK058031 AK295775 AK300292 AK314618 BC003551 NM_004613 NM_198951	72896	-	AK096202 NM_001029864	168390	-	BC033629|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##AK312468|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##BC001696|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##NM_021215|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##DQ372938|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##M98479|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK291714|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK058031|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK295775|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK300292|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK314618|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC003551|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##NM_004613|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##NM_198951|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK096202|KIAA1755|85449|KIAA1755##NM_001029864|KIAA1755|85449|KIAA1755	0.031289	0.0	
chr16	31006034	31006168	reg1002221.p2	6.026	+	TSC_hg19_v1_chr16_+_30996538 NM_001142777 NM_001142778 NM_025193 AK057436 BC004929 AK290950 AK292068	-9572	+	TSC_hg19_v1_chr16_+_30969464 BC108673	-36564	+	AB002337 NM_014712	-37487	+	AB527655 AY995211 BC062298 AY028792 NM_052874 TSC_hg19_v1_chr16_-_31021950	15748	-	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	38315	+	TSC_hg19_v1_chr16_+_31044856 AK315716	38754	+	NM_001142777|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_001142778|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_025193|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK057436|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##BC004929|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK290950|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK292068|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AB002337|SETD1A|9739|SET domain containing 1A##NM_014712|SETD1A|9739|SET domain containing 1A##AY995211|STX1B|112755|syntaxin 1B##BC062298|STX1B|112755|syntaxin 1B##AY028792|STX1B|112755|syntaxin 1B##NM_052874|STX1B|112755|syntaxin 1B##AK091833|STX4|6810|syntaxin 4##AK315716|STX4|6810|syntaxin 4	0.0	0.0	
chr17	33498599	33498741	reg1006845.p1	6.026	+	AK095929 BX647642 NM_001033576 NM_173167 AL832355 AL833281	-23823	+	AB209111 BC002884 TSC_hg19_v1_chr17_-_33469323 BC012075 AK303253 AK001320 AK304508 NM_001014445 NM_018096	-29350	-	AK313775 NM_017559 BC024002 AK225743 AL133054 EU831600 EU831687	-50016	+	AK097473 BC136422 BC140700 NM_152462	22723	-	TSC_hg19_v1_chr17_+_33570090 NM_144975 AK303632 BX647942 AK054668 AK303299 BC021238	71423	+	AL831964 BC052586 AK092241 AX747425 TSC_hg19_v1_chr17_-_33700641 NM_001104587 NM_001104588 NM_001104589 NM_001104590 NM_152270	201999	-	AK095929|UNC45B|146862|unc-45 homolog B (C. elegans)##BX647642|UNC45B|146862|unc-45 homolog B (C. elegans)##NM_001033576|UNC45B|146862|unc-45 homolog B (C. elegans)##NM_173167|UNC45B|146862|unc-45 homolog B (C. elegans)##AL832355|UNC45B|146862|unc-45 homolog B (C. elegans)##AL833281|UNC45B|146862|unc-45 homolog B (C. elegans)##AB209111|NLE1|54475|notchless homolog 1 (Drosophila)##BC002884|NLE1|54475|notchless homolog 1 (Drosophila)##BC012075|NLE1|54475|notchless homolog 1 (Drosophila)##AK303253|NLE1|54475|notchless homolog 1 (Drosophila)##AK001320|NLE1|54475|notchless homolog 1 (Drosophila)##AK304508|NLE1|54475|notchless homolog 1 (Drosophila)##NM_001014445|NLE1|54475|notchless homolog 1 (Drosophila)##NM_018096|NLE1|54475|notchless homolog 1 (Drosophila)##AK313775|FNDC8|54752|fibronectin type III domain containing 8##NM_017559|FNDC8|54752|fibronectin type III domain containing 8##BC024002|FNDC8|54752|fibronectin type III domain containing 8##AK225743|FNDC8|54752|fibronectin type III domain containing 8##AL133054|FNDC8|54752|fibronectin type III domain containing 8##EU831600|FNDC8|54752|fibronectin type III domain containing 8##EU831687|FNDC8|54752|fibronectin type III domain containing 8##AK097473|SLC35G3|146861|solute carrier family 35, member G3##BC136422|SLC35G3|146861|solute carrier family 35, member G3##BC140700|SLC35G3|146861|solute carrier family 35, member G3##NM_152462|SLC35G3|146861|solute carrier family 35, member G3##NM_144975|SLFN5|162394|schlafen family member 5##AK303632|SLFN5|162394|schlafen family member 5##BX647942|SLFN5|162394|schlafen family member 5##AK054668|SLFN5|162394|schlafen family member 5##AK303299|SLFN5|162394|schlafen family member 5##BC021238|SLFN5|162394|schlafen family member 5##AL831964|SLFN11|91607|schlafen family member 11##BC052586|SLFN11|91607|schlafen family member 11##AK092241|SLFN11|91607|schlafen family member 11##NM_001104587|SLFN11|91607|schlafen family member 11##NM_001104588|SLFN11|91607|schlafen family member 11##NM_001104589|SLFN11|91607|schlafen family member 11##NM_001104590|SLFN11|91607|schlafen family member 11##NM_152270|SLFN11|91607|schlafen family member 11	0.626017	0.931462	denovo_WM_7:-1:0.438	CTCF.p2:-23:0.931
chr6	135501520	135501586	reg1007748.p1	6.026	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-125559	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-125665	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-230321	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	895	+	TSC_hg19_v1_chr6_+_135502507 BC064955	942	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	1033	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	1.98712	0.0	denovo_WM_7:-2:0.264	denovo_WM_7:-3:0.330	denovo_WM_7:14:0.265	denovo_WM_7:15:0.331
chr16	87905404	87905527	reg1005615.p2	6.025	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	-2390	-	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-105895	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-105950	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	64682	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	79703	+	AK315535 NM_001173542	88011	+	DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein##AK315535|BANP|54971|BTG3 associated nuclear protein##NM_001173542|BANP|54971|BTG3 associated nuclear protein	2.461296	0.819411	denovo_WM_7:6:0.356	denovo_WM_7:21:0.720	denovo_WM_7:82:0.656	CTCF.p2:-102:0.819
chr8	128569402	128569551	reg1007970.p2	6.025	+	DQ486513 NM_001159542	-141620	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-998752	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-998921	-	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	178849	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	179014	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	237307	+	DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)	0.036841	0.0	
chr13	43598931	43599111	reg1005854.p4	6.024	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	-1319	+	AF126743 AY248898 NM_013238	-1672	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	-32651	-	BC024178 NM_001127615	604589	-	TSC_hg19_v1_chr13_-_44361107 BC068521 NM_001242863 NM_017993	762062	-	NM_001128303	854398	+	BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC024178|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001127615|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##BC068521|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001242863|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_017993|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001128303|LACC1|144811|laccase (multicopper oxidoreductase) domain containing 1	0.994707	0.0	denovo_WM_7:16:0.239	denovo_WM_7:17:0.239	denovo_WM_7:18:0.239	denovo_WM_7:19:0.239
chr2	238807599	238807724	reg1004919.p2	6.024	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	-39409	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	-100241	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-206586	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	67963	+	TSC_hg19_v1_chr2_+_238875673 AK290063	68019	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	68042	+	NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.992983	0.0	denovo_WM_7:60:0.965
chr6	126161874	126162023	reg1008080.p1	6.024	+	TSC_hg19_v1_chr6_+_126112105 BC036461 AK127512 AB074157 AK294558 BX537385 AL832621 AL832628 AB074156	-49840	+	TSC_hg19_v1_chr6_+_126111841 NM_001122842 NM_001199621 NM_181782	-50095	+	TSC_hg19_v1_chr6_+_126102306 AF493978 NM_001199619 NM_001199620 AK307395 BC137094 BC137095	-59614	+	NM_001199622 TSC_hg19_v1_chr6_+_126240392 AK094706	78475	+	TSC_hg19_v1_chr6_+_126277915 NM_138571 BX647228 AK309857 BC015732 AK057688 AJ420577 AY035387 AY035388 AY486460 AY486461 DQ892201 DQ895396	116037	+	BC056878 NM_001031712 TSC_hg19_v1_chr6_+_126307625 AF532977 BC017696 AF182423	145654	+	BC036461|NCOA7|135112|nuclear receptor coactivator 7##AK127512|NCOA7|135112|nuclear receptor coactivator 7##AB074157|NCOA7|135112|nuclear receptor coactivator 7##AK294558|NCOA7|135112|nuclear receptor coactivator 7##BX537385|NCOA7|135112|nuclear receptor coactivator 7##AL832621|NCOA7|135112|nuclear receptor coactivator 7##AL832628|NCOA7|135112|nuclear receptor coactivator 7##AB074156|NCOA7|135112|nuclear receptor coactivator 7##NM_001122842|NCOA7|135112|nuclear receptor coactivator 7##NM_001199621|NCOA7|135112|nuclear receptor coactivator 7##NM_181782|NCOA7|135112|nuclear receptor coactivator 7##AF493978|NCOA7|135112|nuclear receptor coactivator 7##NM_001199619|NCOA7|135112|nuclear receptor coactivator 7##NM_001199620|NCOA7|135112|nuclear receptor coactivator 7##AK307395|NCOA7|135112|nuclear receptor coactivator 7##BC137094|NCOA7|135112|nuclear receptor coactivator 7##BC137095|NCOA7|135112|nuclear receptor coactivator 7##NM_001199622|NCOA7|135112|nuclear receptor coactivator 7##AK094706|NCOA7|135112|nuclear receptor coactivator 7##NM_138571|HINT3|135114|histidine triad nucleotide binding protein 3##BX647228|HINT3|135114|histidine triad nucleotide binding protein 3##AK309857|HINT3|135114|histidine triad nucleotide binding protein 3##BC015732|HINT3|135114|histidine triad nucleotide binding protein 3##AK057688|HINT3|135114|histidine triad nucleotide binding protein 3##AJ420577|HINT3|135114|histidine triad nucleotide binding protein 3##AY035387|HINT3|135114|histidine triad nucleotide binding protein 3##AY035388|HINT3|135114|histidine triad nucleotide binding protein 3##AY486460|HINT3|135114|histidine triad nucleotide binding protein 3##AY486461|HINT3|135114|histidine triad nucleotide binding protein 3##DQ892201|HINT3|135114|histidine triad nucleotide binding protein 3##DQ895396|HINT3|135114|histidine triad nucleotide binding protein 3##BC056878|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##NM_001031712|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##AF532977|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##AF182423|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)	2.385198	0.0	denovo_WM_7:86:0.218	denovo_WM_7:101:0.340
chr6	43053721	43053901	reg1006071.p1	6.024	+	TSC_hg19_v1_chr6_+_43044048 NM_002821 NM_152880 NM_152881 NM_152882 U33635 BC071557 BC002377 BC014626 AK292589 AF531868 AF531869 AF531870 AF531871 AF531872 U40271 AB209350 AK291016	-9734	+	NM_201522 AK127894	-25573	+	AK094102 NM_201523 AK055293 BX640717	-26181	+	NM_003131 TSC_hg19_v1_chr6_+_43139027 BC052572 J03161	85242	+	TSC_hg19_v1_chr6_+_43139192 BC048211	85382	+	TSC_hg19_v1_chr6_+_43139204 AB209128 AB464198	85482	+	NM_002821|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152880|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152881|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152882|PTK7|5754|PTK7 protein tyrosine kinase 7##U33635|PTK7|5754|PTK7 protein tyrosine kinase 7##BC071557|PTK7|5754|PTK7 protein tyrosine kinase 7##BC002377|PTK7|5754|PTK7 protein tyrosine kinase 7##BC014626|PTK7|5754|PTK7 protein tyrosine kinase 7##AK292589|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531868|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531869|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531870|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531871|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531872|PTK7|5754|PTK7 protein tyrosine kinase 7##U40271|PTK7|5754|PTK7 protein tyrosine kinase 7##AB209350|PTK7|5754|PTK7 protein tyrosine kinase 7##AK291016|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_201522|KLC4|89953|kinesin light chain 4##AK127894|KLC4|89953|kinesin light chain 4##AK094102|KLC4|89953|kinesin light chain 4##NM_201523|KLC4|89953|kinesin light chain 4##AK055293|KLC4|89953|kinesin light chain 4##BX640717|KLC4|89953|kinesin light chain 4##NM_003131|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC052572|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##J03161|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC048211|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##AB209128|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)	0.0	0.0	
chr2	102508561	102508688	reg1006776.p1	6.023	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-92	+	TSC_hg19_v1_chr2_+_102508334 BC045694	-282	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-194272	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	99739	+	BC027733 BC012346 NM_173343	106833	+	TSC_hg19_v1_chr2_+_102759205 X16896	250608	+	BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##X16896|IL1R1|3554|interleukin 1 receptor, type I	1.114222	0.0	denovo_WM_7:36:0.280	denovo_WM_7:37:0.240	denovo_WM_7:38:0.235
chr3	125100746	125100883	reg1007293.p1	6.021	+	AF039019 AL833616 AF432210 AJ236885 L04282 BC035591 BC018971 AK314203 TSC_hg19_v1_chr3_-_125094153 BC050260 NM_021964	-6714	-	AK123001 TSC_hg19_v1_chr3_-_124931591 AX721165 AK131070 NM_024628	-169229	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	-170597	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	138217	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	138239	-	TSC_hg19_v1_chr3_-_125314371 NM_022776	213559	-	AF039019|ZNF148|7707|zinc finger protein 148##AL833616|ZNF148|7707|zinc finger protein 148##AF432210|ZNF148|7707|zinc finger protein 148##AJ236885|ZNF148|7707|zinc finger protein 148##L04282|ZNF148|7707|zinc finger protein 148##BC035591|ZNF148|7707|zinc finger protein 148##BC018971|ZNF148|7707|zinc finger protein 148##AK314203|ZNF148|7707|zinc finger protein 148##BC050260|ZNF148|7707|zinc finger protein 148##NM_021964|ZNF148|7707|zinc finger protein 148##AK123001|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_024628|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##NM_003794|SNX4|8723|sorting nexin 4##NM_022776|OSBPL11|114885|oxysterol binding protein-like 11	0.996783	0.0	denovo_WM_7:4:0.815
chr3	72184203	72184371	reg1006994.p2	6.021	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-350016	-	AK313656 NM_173359	-380364	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-380765	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	713261	-	BC017274 TSC_hg19_v1_chr3_-_72897575	713288	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	713305	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.0	0.0	
chr8	117885831	117885932	reg1007538.p1	6.021	+	TSC_hg19_v1_chr8_+_117778793 AK055279 AK315770	-107087	+	BC005955 BC022441 NM_032334 TSC_hg19_v1_chr8_+_117778752	-107130	+	AK222520 TSC_hg19_v1_chr8_-_117768063 AK296162 NM_003756	-117810	-	AK289505 BC050381 TSC_hg19_v1_chr8_-_117887011 D38551	1066	-	TSC_hg19_v1_chr8_-_117887068 NM_006265	1201	-	BC140924 BC142621 NM_001025357 AB463771 AB181519	64578	+	AK055279|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##AK315770|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##BC005955|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##BC022441|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##NM_032334|UTP23|84294|UTP23, small subunit (SSU) processome component, homolog (yeast)##AK222520|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##AK296162|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##NM_003756|EIF3H|8667|eukaryotic translation initiation factor 3, subunit H##AK289505|RAD21|5885|RAD21 homolog (S. pombe)##BC050381|RAD21|5885|RAD21 homolog (S. pombe)##D38551|RAD21|5885|RAD21 homolog (S. pombe)##NM_006265|RAD21|5885|RAD21 homolog (S. pombe)##BC140924|C8orf85|441376|chromosome 8 open reading frame 85##BC142621|C8orf85|441376|chromosome 8 open reading frame 85##NM_001025357|C8orf85|441376|chromosome 8 open reading frame 85##AB181519|C8orf85|441376|chromosome 8 open reading frame 85	0.467859	0.0	denovo_WM_7:0:0.468
chr12	129399540	129399720	reg1006352.p1	6.020	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	-61543	+	BC043528 TSC_hg19_v1_chr12_+_129337985	-61646	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	-91187	-	BC114626 BC114936 NM_133448 AB061814	988581	-	AK056047 TSC_hg19_v1_chr12_-_130646911	1247226	-	TSC_hg19_v1_chr12_+_130647008 BC070037 NM_007197	1247380	+	AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D##AK056047|FLJ31485|440119|uncharacterized LOC440119##BC070037|FZD10|11211|frizzled family receptor 10##NM_007197|FZD10|11211|frizzled family receptor 10	0.0	0.0	
chr10	121468573	121468700	reg1005911.p3	6.019	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-57500	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-57561	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-57583	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	16902	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	16978	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	17069	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.967726	0.0	
chr4	172672729	172672849	reg1005951.p1	6.019	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-1661375	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-1661591	-	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	-1725284	-	NM_001034845 BC047551 BC144036 BC144037 BC063015	61855	+	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	1417163	+	BC043556 TSC_hg19_v1_chr4_-_174090314	1417521	-	BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.999346	0.0	denovo_WM_7:-8:0.872
chrX	122964376	122964508	reg1009627.p1	6.019	+	TSC_hg19_v1_chrX_-_122866897 NM_001081550	-97545	-	TSC_hg19_v1_chrX_-_122866885 AK001758	-97559	-	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	-646202	+	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	29500	+	TSC_hg19_v1_chrX_+_123094397 NM_001042749 AK098737 BX640970 AK298633 AK313559	130082	+	NM_001042750 NM_001042751 NM_006603 TSC_hg19_v1_chrX_+_123095573 AL831939 BX641002 CR749433 BX641003	131131	+	NM_001081550|THOC2|57187|THO complex 2##AK001758|THOC2|57187|THO complex 2##NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis##NM_001042749|STAG2|10735|stromal antigen 2##AK098737|STAG2|10735|stromal antigen 2##BX640970|STAG2|10735|stromal antigen 2##AK298633|STAG2|10735|stromal antigen 2##AK313559|STAG2|10735|stromal antigen 2##NM_001042750|STAG2|10735|stromal antigen 2##NM_001042751|STAG2|10735|stromal antigen 2##NM_006603|STAG2|10735|stromal antigen 2##AL831939|STAG2|10735|stromal antigen 2##BX641002|STAG2|10735|stromal antigen 2##CR749433|STAG2|10735|stromal antigen 2##BX641003|STAG2|10735|stromal antigen 2	0.999708	0.0	
chr1	202896670	202896850	reg1003613.p2	6.018	+	AF306689 TSC_hg19_v1_chr1_-_202896398 AK027656 NM_021633	-376	-	TSC_hg19_v1_chr1_-_202896338 AF190900 AK223072 BC003183 BC004175	-427	-	AB464114 BT007133 U74324 TSC_hg19_v1_chr1_-_202858251 S78873 BC018488 BC037392 AK311900 AK223538 NM_002871	-38456	-	TSC_hg19_v1_chr1_-_202927406 AY424279 AF125179 AF125180 AK222503 AF151803	30578	-	BC010743 TSC_hg19_v1_chr1_-_202927413 BC001594	30653	-	AK001484 AK058114 TSC_hg19_v1_chr1_-_202927441	30687	-	AF306689|KLHL12|59349|kelch-like 12 (Drosophila)##AK027656|KLHL12|59349|kelch-like 12 (Drosophila)##NM_021633|KLHL12|59349|kelch-like 12 (Drosophila)##AF190900|KLHL12|59349|kelch-like 12 (Drosophila)##AK223072|KLHL12|59349|kelch-like 12 (Drosophila)##BC003183|KLHL12|59349|kelch-like 12 (Drosophila)##BC004175|KLHL12|59349|kelch-like 12 (Drosophila)##BT007133|RABIF|5877|RAB interacting factor##U74324|RABIF|5877|RAB interacting factor##S78873|RABIF|5877|RAB interacting factor##BC018488|RABIF|5877|RAB interacting factor##BC037392|RABIF|5877|RAB interacting factor##AK311900|RABIF|5877|RAB interacting factor##AK223538|RABIF|5877|RAB interacting factor##NM_002871|RABIF|5877|RAB interacting factor##AY424279|ADIPOR1|51094|adiponectin receptor 1##AF125179|ADIPOR1|51094|adiponectin receptor 1##AK222503|ADIPOR1|51094|adiponectin receptor 1##AF151803|ADIPOR1|51094|adiponectin receptor 1##BC010743|ADIPOR1|51094|adiponectin receptor 1##BC001594|ADIPOR1|51094|adiponectin receptor 1##AK001484|ADIPOR1|51094|adiponectin receptor 1##AK058114|ADIPOR1|51094|adiponectin receptor 1	1.993861	0.0	
chr13	103453569	103453707	reg1007305.p2	6.018	+	AF411385 NM_001159596 NM_017693 TSC_hg19_v1_chr13_+_103451468 AK290658 AK304391 BC112339	-1997	+	BC051860 TSC_hg19_v1_chr13_-_103451388 AY358959 AK074974 AK222567 AK225103 AK309238 BC001297 NM_024089	-2301	-	NM_138779 TSC_hg19_v1_chr13_-_103426169	-27480	-	NM_001204425 BC075084 BC075085 AB209312 AK000166 AK225229 BC020663 BC051813	6022	+	TSC_hg19_v1_chr13_+_103498240 NM_000123 BC031522 AF462447	44571	+	AK294708 TSC_hg19_v1_chr13_+_103498254	44616	+	AF411385|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_001159596|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_017693|BIVM|54841|basic, immunoglobulin-like variable motif containing##AK290658|BIVM|54841|basic, immunoglobulin-like variable motif containing##AK304391|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC112339|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC051860|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AY358959|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK074974|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK222567|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK225103|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##AK309238|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##BC001297|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##NM_024089|KDELC1|79070|KDEL (Lys-Asp-Glu-Leu) containing 1##NM_138779|C13orf27|93081|chromosome 13 open reading frame 27##NM_001204425|BIVM-ERCC5|100533467|BIVM-ERCC5 readthrough##BC075084|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC075085|BIVM|54841|basic, immunoglobulin-like variable motif containing##AB209312|BIVM-ERCC5|100533467|BIVM-ERCC5 readthrough##AK000166|BIVM|54841|basic, immunoglobulin-like variable motif containing##AK225229|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC020663|BIVM|54841|basic, immunoglobulin-like variable motif containing##BC051813|BIVM|54841|basic, immunoglobulin-like variable motif containing##NM_000123|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##BC031522|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AF462447|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK294708|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5	0.99503	0.0	
chr6	132004731	132004863	reg1005162.p1	6.018	+	AK024899 AK296080 AK310691 AK315893 NM_005021 AK292903 EF560735 AF005632 AB587329 DQ234347	-46315	+	AB385438 AF135022 AM393572 EU832308 EU832392 EU392526 EU392528 EU392529 EU392530 EU392531 AK315030 AF105332 EU392520 EU392522 EU392527 EU392532 BC060759 TSC_hg19_v1_chr6_-_131949372 AF104255 AL136776 AB033042 BC007088 NM_004830 NM_015979	-55510	-	NM_000045 NM_001244438 AY074488 BC005321 TSC_hg19_v1_chr6_+_131894365 M14502 BC020653 CU676606 AB590280 DQ892039 DQ895230 BT006741	-110415	+	BC120953 BC120954 NM_030908	17743	-	NM_001145659	27359	-	TSC_hg19_v1_chr6_+_132129157 NM_006208 BC059375 D12485 M57736	124364	+	AK024899|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK296080|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK310691|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK315893|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##NM_005021|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK292903|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##EF560735|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##DQ234347|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AF135022|MED23|9439|mediator complex subunit 23##AM393572|MED23|9439|mediator complex subunit 23##EU832308|MED23|9439|mediator complex subunit 23##EU832392|MED23|9439|mediator complex subunit 23##EU392526|MED23|9439|mediator complex subunit 23##EU392528|MED23|9439|mediator complex subunit 23##EU392529|MED23|9439|mediator complex subunit 23##EU392530|MED23|9439|mediator complex subunit 23##EU392531|MED23|9439|mediator complex subunit 23##AK315030|MED23|9439|mediator complex subunit 23##AF105332|MED23|9439|mediator complex subunit 23##EU392520|MED23|9439|mediator complex subunit 23##EU392522|MED23|9439|mediator complex subunit 23##EU392527|MED23|9439|mediator complex subunit 23##EU392532|MED23|9439|mediator complex subunit 23##BC060759|MED23|9439|mediator complex subunit 23##AF104255|MED23|9439|mediator complex subunit 23##AL136776|MED23|9439|mediator complex subunit 23##AB033042|MED23|9439|mediator complex subunit 23##BC007088|MED23|9439|mediator complex subunit 23##NM_004830|MED23|9439|mediator complex subunit 23##NM_015979|MED23|9439|mediator complex subunit 23##NM_000045|ARG1|383|arginase, liver##NM_001244438|ARG1|383|arginase, liver##AY074488|ARG1|383|arginase, liver##BC005321|ARG1|383|arginase, liver##M14502|ARG1|383|arginase, liver##BC020653|ARG1|383|arginase, liver##DQ892039|ARG1|383|arginase, liver##DQ895230|ARG1|383|arginase, liver##BT006741|ARG1|383|arginase, liver##BC120953|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##BC120954|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##NM_030908|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##NM_001145659|CTAGE9|643854|CTAGE family, member 9##NM_006208|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##BC059375|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##D12485|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##M57736|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1	0.99696	0.0	
chr19	39050286	39050466	reg1000707.p1	6.017	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-126032	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-133504	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-156475	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	58212	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	59337	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	59440	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.0	0.0	
chr4	154361867	154362047	reg1002770.p2	6.017	+	AK312172 BC032142 TSC_hg19_v1_chr4_+_154265868 AY028916	-96082	+	TSC_hg19_v1_chr4_+_154265799 NM_001253861 NM_032117	-96170	+	TSC_hg19_v1_chr4_+_154178530 BC025417	-183418	+	TSC_hg19_v1_chr4_+_154387511 NM_001131007 NM_015196 AK092270 AX747443 AK308448	25535	+	TSC_hg19_v1_chr4_+_154605403 AF424049 AF424050 AF424051 AF424052 AF424053	243441	+	TSC_hg19_v1_chr4_+_154605431 NM_003264	243473	+	AK312172|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC032142|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##AY028916|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_001253861|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_032117|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC025417|TRIM2|23321|tripartite motif containing 2##NM_001131007|KIAA0922|23240|KIAA0922##NM_015196|KIAA0922|23240|KIAA0922##AK092270|KIAA0922|23240|KIAA0922##AK308448|KIAA0922|23240|KIAA0922##AF424049|TLR2|7097|toll-like receptor 2##NM_003264|TLR2|7097|toll-like receptor 2	1.071485	0.0	
chr3	113551523	113551685	reg1006943.p1	6.015	+	TSC_hg19_v1_chr3_+_113465913 BC013138 AF113129	-85680	+	TSC_hg19_v1_chr3_+_113465902 AK314779	-85700	+	TSC_hg19_v1_chr3_+_113465881 NM_001690 AK293804	-85729	+	BC035040 NM_017577 TSC_hg19_v1_chr3_+_113557732 AK293884 AK292846	6107	+	AK304142 NM_001172105 AY358725 AK292964	64755	+	TSC_hg19_v1_chr3_+_113666756 BC035230 NM_173570 AK127996 AK127025	115123	+	BC013138|ATP6V1A|523|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A##AF113129|ATP6V1A|523|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A##AK314779|ATP6V1A|523|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A##NM_001690|ATP6V1A|523|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A##AK293804|ATP6V1A|523|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A##BC035040|GRAMD1C|54762|GRAM domain containing 1C##NM_017577|GRAMD1C|54762|GRAM domain containing 1C##AK293884|GRAMD1C|54762|GRAM domain containing 1C##AK292846|GRAMD1C|54762|GRAM domain containing 1C##AK304142|GRAMD1C|54762|GRAM domain containing 1C##NM_001172105|GRAMD1C|54762|GRAM domain containing 1C##AY358725|GRAMD1C|54762|GRAM domain containing 1C##AK292964|GRAMD1C|54762|GRAM domain containing 1C##BC035230|ZDHHC23|254887|zinc finger, DHHC-type containing 23##NM_173570|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK127996|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK127025|ZDHHC23|254887|zinc finger, DHHC-type containing 23	0.846433	0.0	denovo_WM_7:-1:0.390	denovo_WM_7:-2:0.257
chr7	110162521	110162701	reg1006025.p1	6.015	+	NM_001024607	-1637975	-	TSC_hg19_v1_chr7_+_108210317 AL080081 AB026908 AF083247 BC028912 AF115512 AF093824	-1952237	+	TSC_hg19_v1_chr7_+_108210292 AK092204	-1952313	+	NM_001099658 NM_001099660 NM_018334 AK001991 BC035133 TSC_hg19_v1_chr7_+_110731182	568512	+	AF359563 NM_032549 TSC_hg19_v1_chr7_-_111202539 AK311968 BC008497 NM_001244606	1039873	-	TSC_hg19_v1_chr7_-_111428948 AK294820	1266400	-	NM_001024607|C7orf66|154907|chromosome 7 open reading frame 66##AL080081|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AB026908|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF083247|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##BC028912|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF093824|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AK092204|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##NM_001099658|LRRN3|54674|leucine rich repeat neuronal 3##NM_001099660|LRRN3|54674|leucine rich repeat neuronal 3##NM_018334|LRRN3|54674|leucine rich repeat neuronal 3##AK001991|LRRN3|54674|leucine rich repeat neuronal 3##BC035133|LRRN3|54674|leucine rich repeat neuronal 3##AF359563|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_032549|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK311968|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC008497|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001244606|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK294820|DOCK4|9732|dedicator of cytokinesis 4	1.337365	0.0	denovo_WM_7:-31:0.308	denovo_WM_7:-32:0.308	denovo_WM_7:-33:0.308	denovo_WM_7:-66:0.333
chr11	20694299	20694403	reg1005087.p1	6.014	+	AK127805 AK299558 NM_006157 NM_201551 AK313445 AK303736 D83017 BC069674 BC096100 BC096101 BC096102 BC096103 CU686968	-3159	+	NM_004211 AF085412	-73404	+	BC047226 TSC_hg19_v1_chr11_+_20409261 AK301449 AK298185 AK300591 BC037544 AB590779 EU831425 EU831518	-285091	+	TSC_hg19_v1_chr11_+_22214577 AB125267 AL832374 AL833271 NM_001142649 NM_213599	1520296	+	AB032435 NM_020346	1665315	+	TSC_hg19_v1_chr11_-_22647372 AF181995 AB464520 BC047028 AF181994 AK223277 AK001716 AK023153 BX640996 BC093867 BC101807 BC035346 BC063038 NM_022725	1953010	-	AK127805|NELL1|4745|NEL-like 1 (chicken)##AK299558|NELL1|4745|NEL-like 1 (chicken)##NM_006157|NELL1|4745|NEL-like 1 (chicken)##NM_201551|NELL1|4745|NEL-like 1 (chicken)##AK313445|NELL1|4745|NEL-like 1 (chicken)##AK303736|NELL1|4745|NEL-like 1 (chicken)##D83017|NELL1|4745|NEL-like 1 (chicken)##BC069674|NELL1|4745|NEL-like 1 (chicken)##BC096100|NELL1|4745|NEL-like 1 (chicken)##BC096101|NELL1|4745|NEL-like 1 (chicken)##BC096102|NELL1|4745|NEL-like 1 (chicken)##BC096103|NELL1|4745|NEL-like 1 (chicken)##NM_004211|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AF085412|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##BC047226|PRMT3|10196|protein arginine methyltransferase 3##AK301449|PRMT3|10196|protein arginine methyltransferase 3##AK298185|PRMT3|10196|protein arginine methyltransferase 3##AK300591|PRMT3|10196|protein arginine methyltransferase 3##BC037544|PRMT3|10196|protein arginine methyltransferase 3##EU831425|PRMT3|10196|protein arginine methyltransferase 3##EU831518|PRMT3|10196|protein arginine methyltransferase 3##AB125267|ANO5|203859|anoctamin 5##AL832374|ANO5|203859|anoctamin 5##AL833271|ANO5|203859|anoctamin 5##NM_001142649|ANO5|203859|anoctamin 5##NM_213599|ANO5|203859|anoctamin 5##AB032435|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##NM_020346|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##AF181995|FANCF|2188|Fanconi anemia, complementation group F##BC047028|FANCF|2188|Fanconi anemia, complementation group F##AF181994|FANCF|2188|Fanconi anemia, complementation group F##AK223277|FANCF|2188|Fanconi anemia, complementation group F##AK001716|FANCF|2188|Fanconi anemia, complementation group F##AK023153|FANCF|2188|Fanconi anemia, complementation group F##BX640996|FANCF|2188|Fanconi anemia, complementation group F##BC093867|FANCF|2188|Fanconi anemia, complementation group F##BC101807|FANCF|2188|Fanconi anemia, complementation group F##BC063038|FANCF|2188|Fanconi anemia, complementation group F##NM_022725|FANCF|2188|Fanconi anemia, complementation group F	0.991743	0.997851	CTCF.p2:30:0.998	denovo_WM_7:54:0.331	denovo_WM_7:55:0.331	denovo_WM_7:56:0.331
chr12	80687327	80687506	reg1006945.p1	6.014	+	NM_173591	-84184	+	AF458589 BC092481 NM_001143885 NM_001244990	-358182	-	TSC_hg19_v1_chr12_-_80328937 NM_002480	-358450	-	NM_001145026	150709	+	NM_002469 AK313287 X52011 BC017834 AB587443 CU676084 DQ893248 DQ896577 CR407641 CR541763	414036	+	TSC_hg19_v1_chr12_+_81110690 NM_005593 BC069373 X14894 AB528948 BT019399	423349	+	NM_173591|OTOGL|283310|otogelin-like##AF458589|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC092481|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001143885|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001244990|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_002480|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001145026|PTPRQ|374462|protein tyrosine phosphatase, receptor type, Q##NM_002469|MYF6|4618|myogenic factor 6 (herculin)##AK313287|MYF6|4618|myogenic factor 6 (herculin)##X52011|MYF6|4618|myogenic factor 6 (herculin)##BC017834|MYF6|4618|myogenic factor 6 (herculin)##DQ893248|MYF6|4618|myogenic factor 6 (herculin)##DQ896577|MYF6|4618|myogenic factor 6 (herculin)##CR407641|MYF6|4618|myogenic factor 6 (herculin)##CR541763|MYF6|4618|myogenic factor 6 (herculin)##NM_005593|MYF5|4617|myogenic factor 5##BC069373|MYF5|4617|myogenic factor 5##X14894|MYF5|4617|myogenic factor 5##BT019399|MYF5|4617|myogenic factor 5	0.87266	0.0	denovo_WM_7:26:0.597	denovo_WM_7:27:0.229
chr12	56584116	56584260	reg1009549.p1	6.013	+	TSC_hg19_v1_chr12_-_56583357 AB209006 NM_001130420 NM_003075 NM_139067	-841	-	AB384911 BT009924 EU176256 AK315153 TSC_hg19_v1_chr12_-_56583268 BC026222 AK293896 AB209293 U66616 BC013045	-916	-	TSC_hg19_v1_chr12_-_56563972 BC009067	-20211	-	NM_001242826 BC011626 BC095418 TSC_hg19_v1_chr12_-_56615651 BC036267	31384	-	TSC_hg19_v1_chr12_-_56615718 BC024284 AK300752 NM_005785 NM_194358 AK314811 AK304576 NM_194359	31537	-	TSC_hg19_v1_chr12_+_56618125 NM_024068	33935	+	AB209006|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_001130420|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_003075|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_139067|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BT009924|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##EU176256|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##AK315153|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BC026222|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##AK293896|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##AB209293|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##U66616|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BC013045|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##BC009067|SMARCC2|6601|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2##NM_001242826|RNF41|10193|ring finger protein 41##BC011626|RNF41|10193|ring finger protein 41##BC095418|RNF41|10193|ring finger protein 41##BC036267|RNF41|10193|ring finger protein 41##BC024284|RNF41|10193|ring finger protein 41##AK300752|RNF41|10193|ring finger protein 41##NM_005785|RNF41|10193|ring finger protein 41##NM_194358|RNF41|10193|ring finger protein 41##AK314811|RNF41|10193|ring finger protein 41##AK304576|RNF41|10193|ring finger protein 41##NM_194359|RNF41|10193|ring finger protein 41##NM_024068|OBFC2B|79035|oligonucleotide/oligosaccharide-binding fold containing 2B	0.988605	0.0	denovo_WM_7:51:0.403	denovo_WM_7:53:0.401
chr2	3426159	3426339	reg1007602.p1	6.013	+	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	-42744	+	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	-44693	-	TSC_hg19_v1_chr2_-_2335085 AK307797	-1091165	-	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	97049	-	TSC_hg19_v1_chr2_-_3523345 NM_018269	97102	-	AJ224117 BT019670 CR541820 DQ892597 DQ895824 TSC_hg19_v1_chr2_-_3605880 AF048994 AK096913 AF048995 AK075490	179630	-	AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK307797|MYT1L|23040|myelin transcription factor 1-like##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1##NM_018269|ADI1|55256|acireductone dioxygenase 1##AJ224117|RNASEH1|246243|ribonuclease H1##BT019670|RNASEH1|246243|ribonuclease H1##CR541820|RNASEH1|246243|ribonuclease H1##DQ892597|RNASEH1|246243|ribonuclease H1##DQ895824|RNASEH1|246243|ribonuclease H1##AF048994|RNASEH1|246243|ribonuclease H1##AK096913|RNASEH1|246243|ribonuclease H1##AF048995|RNASEH1|246243|ribonuclease H1##AK075490|RNASEH1|246243|ribonuclease H1	0.980693	0.0	denovo_WM_7:-48:0.615
chr3	28118936	28119096	reg1008098.p1	6.013	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-354815	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-355223	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-593086	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	164082	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	271366	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	271545	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.996897	0.0	denovo_WM_7:3:0.793
chr6	139648245	139648374	reg1006322.p1	6.013	+	TSC_hg19_v1_chr6_-_139613136 BX647633 AL834248 AL831988 AK314725 BX647477 BC115383 BC115384 AB085905 NM_153235	-35149	-	BC070068 AB033492 NM_016217 TSC_hg19_v1_chr6_+_139456250	-192053	+	TSC_hg19_v1_chr6_+_139349935 AK309402 AF116682 BC014953	-298391	+	NM_001168389 NM_001168388	47114	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	47452	-	NM_006079 TSC_hg19_v1_chr6_-_139695784	47475	-	BX647633|TXLNB|167838|taxilin beta##AL834248|TXLNB|167838|taxilin beta##AL831988|TXLNB|167838|taxilin beta##AK314725|TXLNB|167838|taxilin beta##BX647477|TXLNB|167838|taxilin beta##BC115383|TXLNB|167838|taxilin beta##BC115384|TXLNB|167838|taxilin beta##AB085905|TXLNB|167838|taxilin beta##NM_153235|TXLNB|167838|taxilin beta##BC070068|HECA|51696|headcase homolog (Drosophila)##AB033492|HECA|51696|headcase homolog (Drosophila)##NM_016217|HECA|51696|headcase homolog (Drosophila)##AF116682|C6orf115|58527|chromosome 6 open reading frame 115##BC014953|C6orf115|58527|chromosome 6 open reading frame 115##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_006079|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	0.788076	0.0	denovo_WM_7:-77:0.395	denovo_WM_7:-78:0.327
chr7	158387917	158387986	reg1004189.p1	6.013	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	-7498	-	TSC_hg19_v1_chr7_+_157647233 BC034557	-740677	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-1258240	+	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	109526	-	TSC_hg19_v1_chr7_-_158611303 AK126214	223419	-	TSC_hg19_v1_chr7_-_158622198 AB033054	234240	-	DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK126214|ESYT2|57488|extended synaptotagmin-like protein 2##AB033054|ESYT2|57488|extended synaptotagmin-like protein 2	0.0	0.0	
chr11	102184171	102184310	reg1007371.p2	6.012	+	NM_001195045 AK316116	-201033	+	TSC_hg19_v1_chr11_+_101981177 AK300414 NM_001130145 NM_001195044 NM_006106 BC038235 AB528588 AB567720 AB567721 AY316529	-203038	+	NM_001195005 NM_032930 AK094851 BC054869 TSC_hg19_v1_chr11_+_101918188 BC006128	-266057	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	3962	+	TSC_hg19_v1_chr11_+_102217944 AK303197	33689	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	33788	+	NM_001195045|YAP1|10413|Yes-associated protein 1##AK316116|YAP1|10413|Yes-associated protein 1##AK300414|YAP1|10413|Yes-associated protein 1##NM_001130145|YAP1|10413|Yes-associated protein 1##NM_001195044|YAP1|10413|Yes-associated protein 1##NM_006106|YAP1|10413|Yes-associated protein 1##BC038235|YAP1|10413|Yes-associated protein 1##AB567720|YAP1|10413|Yes-associated protein 1##AB567721|YAP1|10413|Yes-associated protein 1##AY316529|YAP1|10413|Yes-associated protein 1##NM_001195005|C11orf70|85016|chromosome 11 open reading frame 70##NM_032930|C11orf70|85016|chromosome 11 open reading frame 70##AK094851|C11orf70|85016|chromosome 11 open reading frame 70##BC054869|C11orf70|85016|chromosome 11 open reading frame 70##BC006128|C11orf70|85016|chromosome 11 open reading frame 70##NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2	0.16822	0.0	
chr10	104532142	104532322	reg1006906.p2	6.011	+	TSC_hg19_v1_chr10_+_104503740 AY656172	-28474	+	TSC_hg19_v1_chr10_+_104503724 NM_001083913	-28507	+	TSC_hg19_v1_chr10_+_104503723 AK308843 AK316452	-28515	+	NM_017787 TSC_hg19_v1_chr10_+_104535970 AY656171 AK056285 BC113857 BC114465	3723	+	TSC_hg19_v1_chr10_+_104590431 CU687687	58212	+	AK308466 BT020000 CU687686 BC062997 BC063388 BC032843 M14564 TSC_hg19_v1_chr10_-_104597171 AK289898 AK094106 AK312235 NM_000102	64952	-	AY656172|C10orf26|54838|chromosome 10 open reading frame 26##NM_001083913|C10orf26|54838|chromosome 10 open reading frame 26##AK308843|C10orf26|54838|chromosome 10 open reading frame 26##AK316452|C10orf26|54838|chromosome 10 open reading frame 26##NM_017787|C10orf26|54838|chromosome 10 open reading frame 26##AY656171|C10orf26|54838|chromosome 10 open reading frame 26##AK056285|C10orf26|54838|chromosome 10 open reading frame 26##BC113857|C10orf26|54838|chromosome 10 open reading frame 26##BC114465|C10orf26|54838|chromosome 10 open reading frame 26##AK308466|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BT020000|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC062997|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC063388|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC032843|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##M14564|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK289898|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK094106|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK312235|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##NM_000102|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1	1.992318	0.0	denovo_WM_7:90:0.917	denovo_WM_7:105:0.948
chr15	34626668	34626848	reg1001220.p4	6.011	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-15780	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-109518	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-124457	-	AF105366 AF531258 NM_001042497 NM_133647	2286	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	3205	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	3499	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.962783	0.0	denovo_WM_7:15:0.498
chr19	10501422	10501585	reg1007244.p1	6.011	+	TSC_hg19_v1_chr19_-_10491245 AK308360 NM_003331 AK303627 AK308379	-10224	-	TSC_hg19_v1_chr19_-_10491192 X54637 AK222672 BC014243	-10312	-	AF340060 AF340061 AB463787 BC040123 S50015 AK309643 BC058903 X69819 TSC_hg19_v1_chr19_-_10450307 AK301071 AX746321 X69711 BC034409 BC046121 AK312826 AK226023 NM_002162	-51194	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	12666	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	12710	-	TSC_hg19_v1_chr19_-_10514250 NM_007065	12753	-	AK308360|TYK2|7297|tyrosine kinase 2##NM_003331|TYK2|7297|tyrosine kinase 2##AK303627|TYK2|7297|tyrosine kinase 2##AK308379|TYK2|7297|tyrosine kinase 2##X54637|TYK2|7297|tyrosine kinase 2##AK222672|TYK2|7297|tyrosine kinase 2##BC014243|TYK2|7297|tyrosine kinase 2##AF340060|ICAM3|3385|intercellular adhesion molecule 3##AF340061|ICAM3|3385|intercellular adhesion molecule 3##BC040123|ICAM3|3385|intercellular adhesion molecule 3##S50015|ICAM3|3385|intercellular adhesion molecule 3##AK309643|ICAM3|3385|intercellular adhesion molecule 3##BC058903|ICAM3|3385|intercellular adhesion molecule 3##X69819|ICAM3|3385|intercellular adhesion molecule 3##AX746321|ICAM3|3385|intercellular adhesion molecule 3##X69711|ICAM3|3385|intercellular adhesion molecule 3##BC034409|ICAM3|3385|intercellular adhesion molecule 3##BC046121|ICAM3|3385|intercellular adhesion molecule 3##AK312826|ICAM3|3385|intercellular adhesion molecule 3##AK226023|ICAM3|3385|intercellular adhesion molecule 3##NM_002162|ICAM3|3385|intercellular adhesion molecule 3##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)	0.0	0.999343	CTCF.p2:40:0.999
chr22	17700266	17700424	reg1001270.p1	6.011	+	AF190746 NM_017424	-9567	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-19831	-	AF273270 NM_017829	-54169	-	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	18	-	TSC_hg19_v1_chr22_-_17747522 AF277398	47226	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	342874	+	AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF273270|CECR5|27440|cat eye syndrome chromosome region, candidate 5##NM_017829|CECR5|27440|cat eye syndrome chromosome region, candidate 5##AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18	0.0	0.0	
chr2	235199465	235199607	reg1007539.p1	6.011	+	AJ308099 NM_006944 BC069401 BC106705 BC112438 BC113972 U20530	-240149	+	AY090109 NM_024080 BC126342 BC143819	-373491	+	TSC_hg19_v1_chr2_-_234777033 AK301707	-422499	-	NM_005737 TSC_hg19_v1_chr2_-_235405698 BC089043	206183	-	BC057396 TSC_hg19_v1_chr2_+_235860669 NM_014521 DQ232895 AK291209 AF147747	661122	+	TSC_hg19_v1_chr2_+_236402701 NM_001037131 NM_001244888 NM_014914 BC060814 BC167157 AB029022 BC167153 AY033765	1203267	+	AJ308099|SPP2|6694|secreted phosphoprotein 2, 24kDa##NM_006944|SPP2|6694|secreted phosphoprotein 2, 24kDa##BC069401|SPP2|6694|secreted phosphoprotein 2, 24kDa##BC106705|SPP2|6694|secreted phosphoprotein 2, 24kDa##BC112438|SPP2|6694|secreted phosphoprotein 2, 24kDa##BC113972|SPP2|6694|secreted phosphoprotein 2, 24kDa##U20530|SPP2|6694|secreted phosphoprotein 2, 24kDa##AY090109|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##NM_024080|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##BC126342|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##BC143819|TRPM8|79054|transient receptor potential cation channel, subfamily M, member 8##AK301707|MSL3P1|151507|male-specific lethal 3 homolog (Drosophila) pseudogene 1##NM_005737|ARL4C|10123|ADP-ribosylation factor-like 4C##BC089043|ARL4C|10123|ADP-ribosylation factor-like 4C##BC057396|SH3BP4|23677|SH3-domain binding protein 4##NM_014521|SH3BP4|23677|SH3-domain binding protein 4##DQ232895|SH3BP4|23677|SH3-domain binding protein 4##AK291209|SH3BP4|23677|SH3-domain binding protein 4##AF147747|SH3BP4|23677|SH3-domain binding protein 4##NM_001037131|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001244888|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_014914|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC060814|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167157|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AB029022|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167153|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AY033765|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	0.0	0.0	
chr6	71424508	71424654	reg1006824.p1	6.011	+	TSC_hg19_v1_chr6_+_71377620 AK315579 BC028074 BC008672 AK303387 BC036123 AK023221 AY055003 AY055004 AK222711 AK290448 CU688386	-46926	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	-47058	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	-147956	+	AB075843 NM_080742	242182	-	NM_024576 TSC_hg19_v1_chr6_+_71998479	573905	+	TSC_hg19_v1_chr6_+_71998513 BC018688	573929	+	AK315579|SMAP1|60682|small ArfGAP 1##BC028074|SMAP1|60682|small ArfGAP 1##BC008672|SMAP1|60682|small ArfGAP 1##AK303387|SMAP1|60682|small ArfGAP 1##BC036123|SMAP1|60682|small ArfGAP 1##AK023221|SMAP1|60682|small ArfGAP 1##AY055003|SMAP1|60682|small ArfGAP 1##AY055004|SMAP1|60682|small ArfGAP 1##AK222711|SMAP1|60682|small ArfGAP 1##AK290448|SMAP1|60682|small ArfGAP 1##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1##BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##AB075843|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_080742|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1	0.830263	0.0	denovo_WM_7:22:0.404	denovo_WM_7:23:0.427
chr7	104652252	104652386	reg1005901.p2	6.011	+	TSC_hg19_v1_chr7_-_104567089 BC050337	-85229	-	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-683101	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-803888	-	TSC_hg19_v1_chr7_-_104653491 AK124046	1163	-	TSC_hg19_v1_chr7_-_104654062 AK094372	1755	-	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	2183	-	BC050337|LOC723809|723809|uncharacterized LOC723809##AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545	0.999653	0.0	
chr18	60513704	60513837	reg1006876.p1	6.010	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-129462	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-129844	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	-131106	+	TSC_hg19_v1_chr18_-_60795898 AF401211	282165	-	BC027258 NM_000633 NM_000657	472790	-	TSC_hg19_v1_chr18_-_60986977 X06487	473223	-	BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2	0.974994	0.0	denovo_WM_7:14:0.908
chr20	9393108	9393217	reg1007959.p1	6.010	+	NM_000933 AB384821	-104709	+	NM_182797 BC117458 BC143868	-195104	+	AK307482 TSC_hg19_v1_chr20_+_9049806	-343364	+	TSC_hg19_v1_chr20_+_9458460 AK057634	65351	+	TSC_hg19_v1_chr20_+_9494997 AK295336 AK316114 NM_001199897 NM_012261	101837	+	AL121740 BC050727 TSC_hg19_v1_chr20_+_9495326	102150	+	NM_000933|PLCB4|5332|phospholipase C, beta 4##NM_182797|PLCB4|5332|phospholipase C, beta 4##BC117458|PLCB4|5332|phospholipase C, beta 4##BC143868|PLCB4|5332|phospholipase C, beta 4##AK307482|PLCB4|5332|phospholipase C, beta 4##AK057634|PLCB4|5332|phospholipase C, beta 4##AK295336|LAMP5|24141|lysosomal-associated membrane protein family, member 5##AK316114|LAMP5|24141|lysosomal-associated membrane protein family, member 5##NM_001199897|LAMP5|24141|lysosomal-associated membrane protein family, member 5##NM_012261|LAMP5|24141|lysosomal-associated membrane protein family, member 5##AL121740|LAMP5|24141|lysosomal-associated membrane protein family, member 5##BC050727|LAMP5|24141|lysosomal-associated membrane protein family, member 5	0.0	0.0	
chr3	42289144	42289257	reg1007737.p2	6.010	+	TSC_hg19_v1_chr3_+_42201684 BX647199 NM_014965 BC015922 AK000754 AM392573 AM393596 CU677507 EU446989	-87445	+	AL713787 TSC_hg19_v1_chr3_+_42190865	-98353	+	TSC_hg19_v1_chr3_+_42190749 AK294221	-98452	+	BC008283 NM_001174138	16238	-	BC111026 NM_000729	18461	-	AF326749 BC016747 NM_144634	162843	-	BX647199|TRAK1|22906|trafficking protein, kinesin binding 1##NM_014965|TRAK1|22906|trafficking protein, kinesin binding 1##BC015922|TRAK1|22906|trafficking protein, kinesin binding 1##AK000754|TRAK1|22906|trafficking protein, kinesin binding 1##AM392573|TRAK1|22906|trafficking protein, kinesin binding 1##AM393596|TRAK1|22906|trafficking protein, kinesin binding 1##EU446989|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##BC008283|CCK|885|cholecystokinin##NM_001174138|CCK|885|cholecystokinin##BC111026|CCK|885|cholecystokinin##NM_000729|CCK|885|cholecystokinin##AF326749|LYZL4|131375|lysozyme-like 4##BC016747|LYZL4|131375|lysozyme-like 4##NM_144634|LYZL4|131375|lysozyme-like 4	0.0	0.813895	CTCF.p2:-33:0.814
chr7	128731625	128731805	reg1006567.p1	6.010	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-36510	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-36567	-	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	-36820	-	BC009989 NM_005631	96997	+	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	133114	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	276271	+	AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2	0.0	0.708107	CTCF.p2:21:0.708
chr10	17272783	17272875	reg1006913.p1	6.008	+	TSC_hg19_v1_chr10_-_17271978 BC078172	-843	-	TSC_hg19_v1_chr10_+_17271962 AK093924	-850	+	TSC_hg19_v1_chr10_+_17271887 M25246	-941	+	TSC_hg19_v1_chr10_-_17496178 AB062101 AJ621583 NM_001004470	223385	-	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	223536	-	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	386544	-	AK093924|VIM|7431|vimentin##M25246|VIM|7431|vimentin##AB062101|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AJ621583|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001004470|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A	0.99858	0.315666	CTCF.p2:5:0.316	denovo_WM_7:82:0.494	denovo_WM_7:83:0.494
chr21	15906668	15906810	reg1004716.p1	6.008	+	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-151266	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-318242	+	AB463838 AY197607 NM_198996	-327491	-	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	11910	-	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	530478	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	1195586	+	AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25	0.122817	0.0	
chr5	106996765	106996904	reg1006458.p1	6.008	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4098353	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4402377	+	BC024591 NM_015216 AB463068	-4531560	+	AK308672 NM_001962 U26403	9756	-	TSC_hg19_v1_chr5_-_107717106 AK126722	720296	-	BC063316 NM_001163315	720964	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	1.922748	0.0	denovo_WM_7:-11:0.474	denovo_WM_7:-12:0.423	denovo_WM_7:12:0.600	denovo_WM_7:13:0.324
chr19	37808006	37808116	reg1008630.p1	6.007	+	AK093182 AX747975 AY438646 NM_152604	-90696	+	TSC_hg19_v1_chr19_+_37709098 AK122892	-98913	+	BC051277 BC067088 BC080550 TSC_hg19_v1_chr19_-_37701446 AY147015 NM_152279	-106644	-	TSC_hg19_v1_chr19_+_37808794 AK056243	764	+	TSC_hg19_v1_chr19_+_37825560 AK301601 AB013897 AK299969 AK223616 BC017256 NM_181786 BC010024	17494	+	TSC_hg19_v1_chr19_+_37862089 NM_032453 BC014325 AK301135 AK091585 AX747074	54020	+	AK093182|ZNF383|163087|zinc finger protein 383##AY438646|ZNF383|163087|zinc finger protein 383##NM_152604|ZNF383|163087|zinc finger protein 383##AK122892|ZNF383|163087|zinc finger protein 383##BC051277|ZNF585B|92285|zinc finger protein 585B##BC067088|ZNF585B|92285|zinc finger protein 585B##BC080550|ZNF585B|92285|zinc finger protein 585B##AY147015|ZNF585B|92285|zinc finger protein 585B##NM_152279|ZNF585B|92285|zinc finger protein 585B##AK056243|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK301601|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AB013897|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK299969|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK223616|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC017256|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_181786|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC010024|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_032453|ZNF527|84503|zinc finger protein 527##BC014325|ZNF527|84503|zinc finger protein 527##AK301135|ZNF527|84503|zinc finger protein 527##AK091585|ZNF527|84503|zinc finger protein 527	1.602642	0.0	denovo_WM_7:-3:0.564
chr6	6544011	6544174	reg1005205.p2	6.007	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-223182	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	-223207	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	-536395	-	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	44858	+	BC039678 TSC_hg19_v1_chr6_+_6725205	181069	+	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	563734	+	NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1	0.92725	0.0	denovo_WM_7:16:0.362
chr10	9052170	9052281	reg1007812.p1	6.006	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-954742	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-955450	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-955576	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	1995032	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	1995060	+	AK299548 TSC_hg19_v1_chr10_+_11047339	1995115	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	1.736847	0.0	denovo_WM_7:-27:0.425	denovo_WM_7:-28:0.425	denovo_WM_7:-72:0.530
chr3	114229280	114229414	reg1006201.p1	6.006	+	AF139460 NM_001164342	-126859	-	EU675310 NM_173799 AK097192 BC101288 BC101289 BC101290 BC101291	-216494	+	NM_007136 X65233	-272923	-	BC029041 NM_001164347	113705	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	114447	-	AK225788 NM_001164344 NM_001164345	248773	-	AF139460|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164342|ZBTB20|26137|zinc finger and BTB domain containing 20##EU675310|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_173799|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AK097192|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101288|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101289|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101290|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101291|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_007136|ZNF80|7634|zinc finger protein 80##X65233|ZNF80|7634|zinc finger protein 80##BC029041|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164347|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20	0.993453	0.0	denovo_WM_7:4:0.400	denovo_WM_7:5:0.594
chr9	140515980	140516121	reg1006472.p1	6.006	+	TSC_hg19_v1_chr9_+_140513456 BC025772 AK022941	-2583	+	BC047504 NM_001145527 NM_024757 TSC_hg19_v1_chr9_+_140513443	-2607	+	TSC_hg19_v1_chr9_-_140513273 BC011781 AF267857 NM_032937	-2757	-	AB028932 AB058779 TSC_hg19_v1_chr9_+_140638543	122479	+	TSC_hg19_v1_chr9_+_140772233 M94172 M94173 NM_000718 NM_001243812	256184	+	TSC_hg19_v1_chr9_+_140918045 AB209467	402024	+	BC025772|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##AK022941|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##BC047504|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##NM_001145527|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##NM_024757|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##BC011781|C9orf37|85026|chromosome 9 open reading frame 37##AF267857|C9orf37|85026|chromosome 9 open reading frame 37##NM_032937|C9orf37|85026|chromosome 9 open reading frame 37##AB028932|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##AB058779|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##M94172|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##M94173|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##NM_000718|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##NM_001243812|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##AB209467|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit	0.996267	0.0	denovo_WM_7:24:0.811
chr20	30844999	30845155	reg1008757.p1	6.004	+	TSC_hg19_v1_chr20_+_30795710 CU674282 AL832023	-49346	+	D80002 TSC_hg19_v1_chr20_+_30795698	-49379	+	TSC_hg19_v1_chr20_+_30795686 AK291033 AF375884 AK300810 AK303068 BC000582 NM_015352 NM_172236	-49442	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	20409	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	101093	+	TSC_hg19_v1_chr20_+_30946787 AK122923	101749	+	AL832023|POFUT1|23509|protein O-fucosyltransferase 1##D80002|POFUT1|23509|protein O-fucosyltransferase 1##AK291033|POFUT1|23509|protein O-fucosyltransferase 1##AF375884|POFUT1|23509|protein O-fucosyltransferase 1##AK300810|POFUT1|23509|protein O-fucosyltransferase 1##AK303068|POFUT1|23509|protein O-fucosyltransferase 1##BC000582|POFUT1|23509|protein O-fucosyltransferase 1##NM_015352|POFUT1|23509|protein O-fucosyltransferase 1##NM_172236|POFUT1|23509|protein O-fucosyltransferase 1##NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)	0.998256	0.0	
chr17	78965220	78965357	reg1007172.p1	6.003	+	TSC_hg19_v1_chr17_+_78935064 BC073898	-30156	+	BC008754 AK055912 TSC_hg19_v1_chr17_+_78518849	-446470	+	TSC_hg19_v1_chr17_+_78518628 AK295964 NM_001163034 NM_020761 AK296321 BC064515	-446639	+	TSC_hg19_v1_chr17_+_78965640 NM_024591	353	+	TSC_hg19_v1_chr17_+_78965674 AK292105 AK223187 BC010108 AK021811 CU679625 AY329087 CR457284	406	+	AK124762 TSC_hg19_v1_chr17_-_79008489 AK056555	43159	-	BC073898|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK055912|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK295964|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_001163034|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_020761|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK296321|RPTOR|57521|regulatory associated protein of MTOR, complex 1##BC064515|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_024591|CHMP6|79643|charged multivesicular body protein 6##AK292105|CHMP6|79643|charged multivesicular body protein 6##AK223187|CHMP6|79643|charged multivesicular body protein 6##BC010108|CHMP6|79643|charged multivesicular body protein 6##AK021811|CHMP6|79643|charged multivesicular body protein 6##AY329087|CHMP6|79643|charged multivesicular body protein 6##CR457284|CHMP6|79643|charged multivesicular body protein 6##AK124762|FLJ90757|440465|uncharacterized LOC440465##AK056555|FLJ90757|440465|uncharacterized LOC440465	0.999906	0.0	
chr3	101538709	101538855	reg1008533.p1	6.003	+	AK289689 NM_001134456	-40497	+	TSC_hg19_v1_chr3_+_101498080 BC009431	-40694	+	NM_145037 TSC_hg19_v1_chr3_+_101498054	-40734	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	8178	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	29592	+	AY090780 NM_175056 BC143817	615085	+	AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C##NM_145037|FAM55C|91775|family with sequence similarity 55, member C##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1	0.0	0.0	
chr6	24719308	24719448	reg1006671.p1	6.003	+	AK022681 AB075502 AL136632 NM_030939	-34	-	NM_001160094 NM_018473 TSC_hg19_v1_chr6_+_24667281 AF155649 AF220186 AK000508 AF274952 AK309738 BC000894	-52042	+	TSC_hg19_v1_chr6_-_24667128 AK298699	-52156	-	TSC_hg19_v1_chr6_+_24775164 AK021685 NM_001251989 NM_001251990 NM_015895 AK315743 BC005389 BC005185	55816	+	NM_001251991	56262	+	U49187 AK300138 BC001232 NM_015864	158139	-	AK022681|C6orf62|81688|chromosome 6 open reading frame 62##AB075502|C6orf62|81688|chromosome 6 open reading frame 62##AL136632|C6orf62|81688|chromosome 6 open reading frame 62##NM_030939|C6orf62|81688|chromosome 6 open reading frame 62##NM_001160094|ACOT13|55856|acyl-CoA thioesterase 13##NM_018473|ACOT13|55856|acyl-CoA thioesterase 13##AF155649|ACOT13|55856|acyl-CoA thioesterase 13##AF220186|ACOT13|55856|acyl-CoA thioesterase 13##AK000508|ACOT13|55856|acyl-CoA thioesterase 13##AF274952|ACOT13|55856|acyl-CoA thioesterase 13##AK309738|ACOT13|55856|acyl-CoA thioesterase 13##BC000894|ACOT13|55856|acyl-CoA thioesterase 13##AK298699|TDP2|51567|tyrosyl-DNA phosphodiesterase 2##AK021685|GMNN|51053|geminin, DNA replication inhibitor##NM_001251989|GMNN|51053|geminin, DNA replication inhibitor##NM_001251990|GMNN|51053|geminin, DNA replication inhibitor##NM_015895|GMNN|51053|geminin, DNA replication inhibitor##AK315743|GMNN|51053|geminin, DNA replication inhibitor##BC005389|GMNN|51053|geminin, DNA replication inhibitor##BC005185|GMNN|51053|geminin, DNA replication inhibitor##NM_001251991|GMNN|51053|geminin, DNA replication inhibitor##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B	0.9975	0.0	
chr11	130002199	130002346	reg1006599.p1	6.002	+	TSC_hg19_v1_chr11_+_129991591 L23113	-10644	+	L23114 TSC_hg19_v1_chr11_+_129979349	-22933	+	AK128162 NM_001243299	-61810	+	TSC_hg19_v1_chr11_+_130029676 NM_021978	27405	+	AK314173 TSC_hg19_v1_chr11_+_130029706	27432	+	TSC_hg19_v1_chr11_+_130029713 BC030532	27469	+	L23113|APLP2|334|amyloid beta (A4) precursor-like protein 2##L23114|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK128162|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001243299|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_021978|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AK314173|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##BC030532|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)	0.46748	0.011183	denovo_WM_7:-12:0.314
chr16	48352780	48352928	reg1006652.p1	6.002	+	AK074775 AK127125 TSC_hg19_v1_chr16_+_48278216 BC093910 BC093912 BC143246 AK027544 AK294779	-74584	+	TSC_hg19_v1_chr16_+_48278210 AJ548761 NM_031490	-74660	+	AF367202 AF411579 NM_032583 NM_145186	-83767	-	BC042550 TSC_hg19_v1_chr16_-_48399765	46906	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	46937	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	66398	-	AK074775|LONP2|83752|lon peptidase 2, peroxisomal##AK127125|LONP2|83752|lon peptidase 2, peroxisomal##BC093910|LONP2|83752|lon peptidase 2, peroxisomal##BC093912|LONP2|83752|lon peptidase 2, peroxisomal##BC143246|LONP2|83752|lon peptidase 2, peroxisomal##AK027544|LONP2|83752|lon peptidase 2, peroxisomal##AK294779|LONP2|83752|lon peptidase 2, peroxisomal##AJ548761|LONP2|83752|lon peptidase 2, peroxisomal##NM_031490|LONP2|83752|lon peptidase 2, peroxisomal##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)	0.987204	0.0	denovo_WM_7:41:0.348	denovo_WM_7:42:0.366	denovo_WM_7:43:0.274
chr2	20155680	20155822	reg1006683.p2	6.002	+	CU691276 BC070381 TSC_hg19_v1_chr2_-_20101717 BC057850 NM_001008237	-54070	-	TSC_hg19_v1_chr2_-_20101456 BC050088	-54323	-	AK022396 BC068572 TSC_hg19_v1_chr2_+_20068650 AK097927	-87116	+	AB385451 AK122917 AK315094 BC036659 NM_001006657 NM_020779 AB037757 TSC_hg19_v1_chr2_-_20189911	34092	-	AJ224741 BC139907 TSC_hg19_v1_chr2_-_20212430 EU541440	56669	-	TSC_hg19_v1_chr2_-_20212456 AK290856 NM_002381	56714	-	BC070381|TTC32|130502|tetratricopeptide repeat domain 32##BC057850|TTC32|130502|tetratricopeptide repeat domain 32##NM_001008237|TTC32|130502|tetratricopeptide repeat domain 32##AK022396|FLJ12334|400946|uncharacterized LOC400946##BC068572|FLJ12334|400946|uncharacterized LOC400946##AK097927|FLJ12334|400946|uncharacterized LOC400946##AK122917|WDR35|57539|WD repeat domain 35##AK315094|WDR35|57539|WD repeat domain 35##BC036659|WDR35|57539|WD repeat domain 35##NM_001006657|WDR35|57539|WD repeat domain 35##NM_020779|WDR35|57539|WD repeat domain 35##AB037757|WDR35|57539|WD repeat domain 35##AJ224741|MATN3|4148|matrilin 3##BC139907|MATN3|4148|matrilin 3##EU541440|MATN3|4148|matrilin 3##AK290856|MATN3|4148|matrilin 3##NM_002381|MATN3|4148|matrilin 3	0.099664	0.060256	
chr8	8869554	8869682	reg1005904.p1	6.002	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-9113	+	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	-9253	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	-118680	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	138560	-	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	139482	-	TSC_hg19_v1_chr8_+_9413421 BC098394	543787	+	AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.892671	0.0	denovo_WM_7:-71:0.795
chr17	68295401	68295536	reg1008036.p2	6.001	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-129772	+	BC033038 NM_170742	-194474	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-224038	+	TSC_hg19_v1_chr17_-_70116937 AL833139	1821470	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	1821691	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	1821702	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.015439	0.0	
chr18	13569184	13569364	reg1003127.p2	6.001	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-350489	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-577929	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-621210	+	NM_001003674 NM_001003675	42390	+	AF009426 AF009427 NM_004338 NM_181483	51592	+	TSC_hg19_v1_chr18_-_13726549 AK055618	157232	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr6	147523674	147523844	reg1007197.p1	6.001	+	AK097570 NM_024694 AL832192	-603622	+	TSC_hg19_v1_chr6_+_146864968 AK312202 U71127 AB529170 CU677203 DQ892882 DQ896131 AF498958 BT020016 U59878	-658751	+	BC015061 NM_006834 TSC_hg19_v1_chr6_+_146864864	-658890	+	TSC_hg19_v1_chr6_+_147524880 BC043645	1115	+	NM_001127715 NM_139244 AL834152 BC107737 BC113382 BC113408	1797	+	TSC_hg19_v1_chr6_+_147527118 AK128121	3351	+	AK097570|C6orf103|79747|chromosome 6 open reading frame 103##NM_024694|C6orf103|79747|chromosome 6 open reading frame 103##AL832192|C6orf103|79747|chromosome 6 open reading frame 103##AK312202|RAB32|10981|RAB32, member RAS oncogene family##U71127|RAB32|10981|RAB32, member RAS oncogene family##DQ892882|RAB32|10981|RAB32, member RAS oncogene family##DQ896131|RAB32|10981|RAB32, member RAS oncogene family##AF498958|RAB32|10981|RAB32, member RAS oncogene family##BT020016|RAB32|10981|RAB32, member RAS oncogene family##U59878|RAB32|10981|RAB32, member RAS oncogene family##BC015061|RAB32|10981|RAB32, member RAS oncogene family##NM_006834|RAB32|10981|RAB32, member RAS oncogene family##BC043645|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##NM_001127715|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##NM_139244|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##AL834152|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC107737|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC113382|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC113408|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##AK128121|STXBP5|134957|syntaxin binding protein 5 (tomosyn)	0.0	0.0	
chr7	140396324	140396436	reg1004611.p2	6.001	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-23442	+	AB033103 TSC_hg19_v1_chr7_-_140340614	-55770	-	BC132875 BC144190 NM_015689	-94054	-	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	123	+	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	228127	-	AF151897 AK024776 NM_016071	318087	-	AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AB033103|DENND2A|27147|DENN/MADD domain containing 2A##BC132875|DENND2A|27147|DENN/MADD domain containing 2A##BC144190|DENND2A|27147|DENN/MADD domain containing 2A##NM_015689|DENND2A|27147|DENN/MADD domain containing 2A##AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33	0.0	0.0	
chr2	37858052	37858175	reg1007717.p1	6.000	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-286300	+	BC030706 BC012820 AB015982 NM_005813	-313920	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-399267	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	40666	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	41276	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	294319	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.995743	0.0	denovo_WM_7:25:0.583
chr1	33281698	33281857	reg1008130.p1	5.999	+	TSC_hg19_v1_chr1_+_33231274 AB040955	-50506	+	TSC_hg19_v1_chr1_+_33231234 AK298965 NM_001198972 NM_001198973	-50546	+	TSC_hg19_v1_chr1_+_33219620 AB384615	-62162	+	U40714 U89436 DQ891666 DQ894853 TSC_hg19_v1_chr1_-_33282932 BC001933 BC004151 BC016689 AK026535 AK223608	1142	-	AK090711 AX746586 TSC_hg19_v1_chr1_+_33283180 BX647916 NM_001017406 NM_022753 BX647667	1340	+	TSC_hg19_v1_chr1_+_33283215 BC015175	1535	+	AB040955|KIAA1522|57648|KIAA1522##AK298965|KIAA1522|57648|KIAA1522##NM_001198972|KIAA1522|57648|KIAA1522##NM_001198973|KIAA1522|57648|KIAA1522##U40714|YARS|8565|tyrosyl-tRNA synthetase##U89436|YARS|8565|tyrosyl-tRNA synthetase##DQ891666|YARS|8565|tyrosyl-tRNA synthetase##DQ894853|YARS|8565|tyrosyl-tRNA synthetase##BC001933|YARS|8565|tyrosyl-tRNA synthetase##BC004151|YARS|8565|tyrosyl-tRNA synthetase##BC016689|YARS|8565|tyrosyl-tRNA synthetase##AK026535|YARS|8565|tyrosyl-tRNA synthetase##AK223608|YARS|8565|tyrosyl-tRNA synthetase##AK090711|S100PBP|64766|S100P binding protein##BX647916|S100PBP|64766|S100P binding protein##NM_001017406|S100PBP|64766|S100P binding protein##NM_022753|S100PBP|64766|S100P binding protein##BX647667|S100PBP|64766|S100P binding protein##BC015175|S100PBP|64766|S100P binding protein	1.504813	0.0	denovo_WM_7:57:0.288
chr1	12213602	12213768	reg1008086.p2	5.998	+	D86042 BC063482 NM_152942 BC073839 BC141804	-27669	+	M83554 NM_001243 BC136400 BC171762 S75768	-90141	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-134115	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	13376	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	13426	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	76422	+	D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)	0.0	0.0	
chr21	45557955	45558135	reg1004895.p2	5.998	+	TSC_hg19_v1_chr21_+_45553564 D86062 BC003587 D86061	-4484	+	TSC_hg19_v1_chr21_+_45553491 NM_004649 NM_198155 U53003 BC002370 Y07572	-4540	+	TSC_hg19_v1_chr21_+_45527269 U53346 X95263 BC013309 BC014988	-30746	+	AF216749 CU687930 AB528572 AF199028 BC064637 AF289028 TSC_hg19_v1_chr21_-_45660825 AB014553 NM_015259	102721	-	TSC_hg19_v1_chr21_-_45660850 AK090492 AK290192 AK294031 AK311496 AK314369 AX746477	102812	-	AF194032 NM_013369 NM_175867	124053	-	D86062|C21orf33|8209|chromosome 21 open reading frame 33##BC003587|C21orf33|8209|chromosome 21 open reading frame 33##D86061|C21orf33|8209|chromosome 21 open reading frame 33##NM_004649|C21orf33|8209|chromosome 21 open reading frame 33##NM_198155|C21orf33|8209|chromosome 21 open reading frame 33##U53003|C21orf33|8209|chromosome 21 open reading frame 33##BC002370|C21orf33|8209|chromosome 21 open reading frame 33##Y07572|C21orf33|8209|chromosome 21 open reading frame 33##U53346|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##X95263|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC013309|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC014988|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##AF216749|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF199028|ICOSLG|23308|inducible T-cell co-stimulator ligand##BC064637|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF289028|ICOSLG|23308|inducible T-cell co-stimulator ligand##AB014553|ICOSLG|23308|inducible T-cell co-stimulator ligand##NM_015259|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK090492|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK290192|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK294031|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK311496|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK314369|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF194032|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_013369|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_175867|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like	0.0	0.0	
chr5	126020920	126021071	reg1007379.p1	5.997	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-53580	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-84363	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-90139	-	NM_005573 BC052951	91320	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	91836	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	91887	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.996237	0.0	denovo_WM_7:20:0.907
chr6	82462299	82462475	reg1006948.p1	5.997	+	AY740520 FJ211061 CU674334 CU675631 TSC_hg19_v1_chr6_-_82461975	-466	-	TSC_hg19_v1_chr6_+_80816397 AK289977 BC040139 M55575 AB529112 BT020063 X52446	-1645950	+	TSC_hg19_v1_chr6_+_80816387 AK316545 BC034481	-1646004	+	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	24	-	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	495026	-	TSC_hg19_v1_chr6_-_82957441 NM_015525 DQ005633 DQ005634	495081	-	AY740520|FAM46A|55603|family with sequence similarity 46, member A##AK289977|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC040139|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##M55575|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BT020063|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##X52446|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK316545|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC034481|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##NM_015525|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##DQ005633|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##DQ005634|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase	0.0	0.0	
chr15	50777685	50777821	reg1005857.p1	5.996	+	TSC_hg19_v1_chr15_+_50716601 AK292400 BX537420 NM_001128610 NM_001128611 NM_005154 AK296480 BC038801 D29956 BC015545 BC110590 BC092443 BC026954 BC051345	-61132	+	TSC_hg19_v1_chr15_+_50647681 BX537481	-130082	+	NM_002041 NM_005254 NM_016654 NM_016655 NM_181427	-130149	-	NM_203494	61148	-	TSC_hg19_v1_chr15_-_50978746 BC128987 BC128988	201013	-	TSC_hg19_v1_chr15_-_50978923 AK000124	201186	-	AK292400|USP8|9101|ubiquitin specific peptidase 8##BX537420|USP8|9101|ubiquitin specific peptidase 8##NM_001128610|USP8|9101|ubiquitin specific peptidase 8##NM_001128611|USP8|9101|ubiquitin specific peptidase 8##NM_005154|USP8|9101|ubiquitin specific peptidase 8##AK296480|USP8|9101|ubiquitin specific peptidase 8##BC038801|USP8|9101|ubiquitin specific peptidase 8##D29956|USP8|9101|ubiquitin specific peptidase 8##BC015545|USP8|9101|ubiquitin specific peptidase 8##BC110590|USP8|9101|ubiquitin specific peptidase 8##BC092443|USP8|9101|ubiquitin specific peptidase 8##BC026954|USP8|9101|ubiquitin specific peptidase 8##BC051345|USP8|9101|ubiquitin specific peptidase 8##BX537481|LOC100129387|100129387|uncharacterized LOC100129387##NM_002041|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_005254|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016654|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016655|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_181427|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_203494|USP50|373509|ubiquitin specific peptidase 50##BC128987|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##BC128988|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK000124|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7	2.995684	0.0	denovo_WM_7:2:0.381	denovo_WM_7:3:0.289	denovo_WM_7:19:0.276	denovo_WM_7:20:0.368	denovo_WM_7:-98:0.890
chr12	96608835	96609015	reg1003210.p1	5.995	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-20658	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-20799	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-179510	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	185058	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	185392	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	692106	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.998986	0.0	denovo_WM_7:-32:0.462	denovo_WM_7:-33:0.518
chr19	44252015	44252152	reg1006045.p1	5.995	+	BC033853 NM_019612 BC066939	-31858	+	NM_001005376 NM_001005377 NM_002659	-77586	-	AF257789 CR456952 AB464026 DQ893017 DQ896262 M83246 TSC_hg19_v1_chr19_-_44174320 AK290774 AY029180 X51675 X74039 BC002788	-77780	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	6937	-	TSC_hg19_v1_chr19_-_44259074 AK022948	7010	-	TSC_hg19_v1_chr19_-_44259117 NM_019108	7045	-	BC033853|IRGC|56269|immunity-related GTPase family, cinema##NM_019612|IRGC|56269|immunity-related GTPase family, cinema##BC066939|IRGC|56269|immunity-related GTPase family, cinema##NM_001005376|PLAUR|5329|plasminogen activator, urokinase receptor##NM_001005377|PLAUR|5329|plasminogen activator, urokinase receptor##NM_002659|PLAUR|5329|plasminogen activator, urokinase receptor##AF257789|PLAUR|5329|plasminogen activator, urokinase receptor##CR456952|PLAUR|5329|plasminogen activator, urokinase receptor##DQ893017|PLAUR|5329|plasminogen activator, urokinase receptor##DQ896262|PLAUR|5329|plasminogen activator, urokinase receptor##M83246|PLAUR|5329|plasminogen activator, urokinase receptor##AK290774|PLAUR|5329|plasminogen activator, urokinase receptor##AY029180|PLAUR|5329|plasminogen activator, urokinase receptor##X51675|PLAUR|5329|plasminogen activator, urokinase receptor##X74039|PLAUR|5329|plasminogen activator, urokinase receptor##BC002788|PLAUR|5329|plasminogen activator, urokinase receptor##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.0	0.0	
chr2	160689560	160689698	reg1005984.p1	5.995	+	TSC_hg19_v1_chr2_-_160654754 AK304422 AY314007 NM_001198763 NM_001198764 NM_014880	-34873	-	TSC_hg19_v1_chr2_-_160654668 D14664 AF499000 AK291279 AK125081	-34930	-	TSC_hg19_v1_chr2_+_160569027 BC065014	-120589	+	AF064827 AY184222 AY314006 TSC_hg19_v1_chr2_-_160761248 AF011333 AK310678 BC057232	71597	-	NM_001198759 NM_001198760 NM_002349 TSC_hg19_v1_chr2_-_160761270	71661	-	BC140823 BC144631 TSC_hg19_v1_chr2_-_160919021	229350	-	AK304422|CD302|9936|CD302 molecule##AY314007|CD302|9936|CD302 molecule##NM_001198763|CD302|9936|CD302 molecule##NM_001198764|CD302|9936|CD302 molecule##NM_014880|CD302|9936|CD302 molecule##D14664|CD302|9936|CD302 molecule##AF499000|CD302|9936|CD302 molecule##AK291279|CD302|9936|CD302 molecule##AK125081|CD302|9936|CD302 molecule##BC065014|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AF064827|LY75|4065|lymphocyte antigen 75##AY184222|LY75-CD302|100526664|LY75-CD302 readthrough##AY314006|LY75-CD302|100526664|LY75-CD302 readthrough##AF011333|LY75|4065|lymphocyte antigen 75##AK310678|LY75|4065|lymphocyte antigen 75##BC057232|LY75|4065|lymphocyte antigen 75##NM_001198759|LY75-CD302|100526664|LY75-CD302 readthrough##NM_001198760|LY75-CD302|100526664|LY75-CD302 readthrough##NM_002349|LY75|4065|lymphocyte antigen 75##BC140823|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##BC144631|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa	0.997096	0.0	denovo_WM_7:19:0.313	denovo_WM_7:20:0.313	denovo_WM_7:21:0.313
chr7	149297925	149298105	reg1000659.p3	5.995	+	TSC_hg19_v1_chr7_-_149194899 NM_001163474 NM_152557 AK128244	-103117	-	TSC_hg19_v1_chr7_-_149194830 AK291814	-103175	-	TSC_hg19_v1_chr7_-_149194795 BC068505 BC035586	-103230	-	AB590454 AK295771 TSC_hg19_v1_chr7_-_149321793 AK022762	23727	-	TSC_hg19_v1_chr7_-_149321856 BC047675	23839	-	TSC_hg19_v1_chr7_+_149412043 BC142722 BC146667 AB058765 BC150330 BC152409 NM_032534	114072	+	NM_001163474|ZNF746|155061|zinc finger protein 746##NM_152557|ZNF746|155061|zinc finger protein 746##AK128244|ZNF746|155061|zinc finger protein 746##AK291814|ZNF746|155061|zinc finger protein 746##BC068505|ZNF746|155061|zinc finger protein 746##BC035586|ZNF746|155061|zinc finger protein 746##AK295771|ZNF767|79970|zinc finger family member 767##AK022762|ZNF767|79970|zinc finger family member 767##BC047675|ZNF767|79970|zinc finger family member 767##BC142722|KRBA1|84626|KRAB-A domain containing 1##BC146667|KRBA1|84626|KRAB-A domain containing 1##AB058765|KRBA1|84626|KRAB-A domain containing 1##BC150330|KRBA1|84626|KRAB-A domain containing 1##BC152409|KRBA1|84626|KRAB-A domain containing 1##NM_032534|KRBA1|84626|KRAB-A domain containing 1	0.120163	0.0	
chr9	140177471	140177629	reg1005489.p1	5.995	+	TSC_hg19_v1_chr9_+_140172277 AK000252 NM_017723	-5265	+	TSC_hg19_v1_chr9_+_140149888 AF464935 AB384577 AM393289	-27627	+	TSC_hg19_v1_chr9_+_140149768 BC019029	-27751	+	BC053618 NM_001004354 TSC_hg19_v1_chr9_-_140196724	19170	-	BC065002 TSC_hg19_v1_chr9_-_140317615 BC110879 AK000440 AK094438 BC039252 BC037355	140060	-	TSC_hg19_v1_chr9_-_140317652 BC033079 BC069205	140126	-	AK000252|C9orf167|54863|chromosome 9 open reading frame 167##NM_017723|C9orf167|54863|chromosome 9 open reading frame 167##AF464935|COBRA1|25920|cofactor of BRCA1##AM393289|COBRA1|25920|cofactor of BRCA1##BC019029|COBRA1|25920|cofactor of BRCA1##BC053618|NRARP|441478|NOTCH-regulated ankyrin repeat protein##NM_001004354|NRARP|441478|NOTCH-regulated ankyrin repeat protein##BC065002|EXD3|54932|exonuclease 3'-5' domain containing 3##BC110879|EXD3|54932|exonuclease 3'-5' domain containing 3##AK000440|EXD3|54932|exonuclease 3'-5' domain containing 3##AK094438|EXD3|54932|exonuclease 3'-5' domain containing 3##BC039252|EXD3|54932|exonuclease 3'-5' domain containing 3##BC037355|EXD3|54932|exonuclease 3'-5' domain containing 3##BC033079|EXD3|54932|exonuclease 3'-5' domain containing 3##BC069205|EXD3|54932|exonuclease 3'-5' domain containing 3	0.99834	0.0	denovo_WM_7:53:0.457	denovo_WM_7:54:0.457
chr4	156560865	156561028	reg1007832.p2	5.994	+	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	-262835	-	TSC_hg19_v1_chr4_-_156297990 AK301075 BC146864 BC128540 BC128541 BC056683	-262938	-	TSC_hg19_v1_chr4_-_156297959 BC022852	-262991	-	NM_000856 NM_001130682 NM_001130686 NM_001130687 X66534 Y15723 AK312952 BC095395 TSC_hg19_v1_chr4_+_156587999 AK309950 AK096588 NM_001130683 NM_001130685 BX649180 AK226125 BX647200 BC012627	27229	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	27871	+	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	119258	+	AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9##AK301075|MAP9|79884|microtubule-associated protein 9##BC146864|MAP9|79884|microtubule-associated protein 9##BC128540|MAP9|79884|microtubule-associated protein 9##BC128541|MAP9|79884|microtubule-associated protein 9##BC056683|MAP9|79884|microtubule-associated protein 9##BC022852|MAP9|79884|microtubule-associated protein 9##NM_000856|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130682|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130686|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130687|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##X66534|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##Y15723|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK312952|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC095395|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK309950|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK096588|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130683|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130685|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX649180|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK226125|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX647200|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC012627|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3	0.0	0.0	
chr5	139027540	139027720	reg1007006.p1	5.994	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	-86282	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-86705	+	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	-86857	+	TSC_hg19_v1_chr5_+_139027874 AK024338	244	+	TSC_hg19_v1_chr5_+_139027942 BC006428	300	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	354	+	U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK024338|CXXC5|51523|CXXC finger protein 5##BC006428|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5	0.994681	0.0	denovo_WM_7:14:0.455	denovo_WM_7:15:0.455
chr6	18261101	18261281	reg1005629.p2	5.993	+	TSC_hg19_v1_chr6_+_18155652 BC113093 NM_153042 AK125318	-105536	+	S62904 AK310420 TSC_hg19_v1_chr6_-_18155309 U12387 BC005339 BC009596 NM_000367	-105863	-	AY324850 BC103888 BC103889 BC103890 NM_198586	-138341	-	X64229 TSC_hg19_v1_chr6_-_18264759 BC012442 AK312616 AK298089 AK294079 BC035259 AK297749 NM_001134709 NM_003472	3530	-	AK096832 NM_182757 AB076367 BC063311 AL832329	126476	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	1576444	+	BC113093|KDM1B|221656|lysine (K)-specific demethylase 1B##NM_153042|KDM1B|221656|lysine (K)-specific demethylase 1B##AK125318|KDM1B|221656|lysine (K)-specific demethylase 1B##S62904|TPMT|7172|thiopurine S-methyltransferase##AK310420|TPMT|7172|thiopurine S-methyltransferase##U12387|TPMT|7172|thiopurine S-methyltransferase##BC005339|TPMT|7172|thiopurine S-methyltransferase##BC009596|TPMT|7172|thiopurine S-methyltransferase##NM_000367|TPMT|7172|thiopurine S-methyltransferase##AY324850|NHLRC1|378884|NHL repeat containing 1##BC103888|NHLRC1|378884|NHL repeat containing 1##BC103889|NHLRC1|378884|NHL repeat containing 1##BC103890|NHLRC1|378884|NHL repeat containing 1##NM_198586|NHLRC1|378884|NHL repeat containing 1##X64229|DEK|7913|DEK oncogene##BC012442|DEK|7913|DEK oncogene##AK312616|DEK|7913|DEK oncogene##AK298089|DEK|7913|DEK oncogene##AK294079|DEK|7913|DEK oncogene##BC035259|DEK|7913|DEK oncogene##AK297749|DEK|7913|DEK oncogene##NM_001134709|DEK|7913|DEK oncogene##NM_003472|DEK|7913|DEK oncogene##AK096832|RNF144B|255488|ring finger protein 144B##NM_182757|RNF144B|255488|ring finger protein 144B##AB076367|RNF144B|255488|ring finger protein 144B##BC063311|RNF144B|255488|ring finger protein 144B##AL832329|RNF144B|255488|ring finger protein 144B##BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	0.987548	0.0	denovo_WM_7:33:0.236	denovo_WM_7:34:0.236	denovo_WM_7:35:0.236	denovo_WM_7:36:0.236
chr8	39746946	39747075	reg1008054.p1	5.993	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	-51270	-	NM_001190956 NM_014237 AK313961 AY358321 BC070279 BC034624 CU687082 AJ133004 BC121045 BC121046 AK225744	-304893	+	NM_145004 AK300148 AY172952 AY358739 AK313864 BC026169 BC030698 BC034975 AK122608 BC028702 BC030014 BC026085 DQ890910 DQ894061 CU693126	-781840	+	NM_002164 AK313259 BC027882 X17668 AY221100 CU693308 JF772862	24374	+	AK128691 NM_194294	45463	+	BC021672 NM_020130 BC020623 TSC_hg19_v1_chr8_+_40011000 AF268037 AK026240 EU832636 EU832712	264008	+	X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001190956|ADAM18|8749|ADAM metallopeptidase domain 18##NM_014237|ADAM18|8749|ADAM metallopeptidase domain 18##AK313961|ADAM18|8749|ADAM metallopeptidase domain 18##AY358321|ADAM18|8749|ADAM metallopeptidase domain 18##BC070279|ADAM18|8749|ADAM metallopeptidase domain 18##BC034624|ADAM18|8749|ADAM metallopeptidase domain 18##AJ133004|ADAM18|8749|ADAM metallopeptidase domain 18##BC121045|ADAM18|8749|ADAM metallopeptidase domain 18##BC121046|ADAM18|8749|ADAM metallopeptidase domain 18##AK225744|ADAM18|8749|ADAM metallopeptidase domain 18##NM_145004|ADAM32|203102|ADAM metallopeptidase domain 32##AK300148|ADAM32|203102|ADAM metallopeptidase domain 32##AY172952|ADAM32|203102|ADAM metallopeptidase domain 32##AY358739|ADAM32|203102|ADAM metallopeptidase domain 32##AK313864|ADAM32|203102|ADAM metallopeptidase domain 32##BC026169|ADAM32|203102|ADAM metallopeptidase domain 32##BC030698|ADAM32|203102|ADAM metallopeptidase domain 32##BC034975|ADAM32|203102|ADAM metallopeptidase domain 32##AK122608|ADAM32|203102|ADAM metallopeptidase domain 32##BC028702|ADAM32|203102|ADAM metallopeptidase domain 32##BC030014|ADAM32|203102|ADAM metallopeptidase domain 32##BC026085|ADAM32|203102|ADAM metallopeptidase domain 32##DQ890910|ADAM32|203102|ADAM metallopeptidase domain 32##DQ894061|ADAM32|203102|ADAM metallopeptidase domain 32##NM_002164|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK313259|IDO1|3620|indoleamine 2,3-dioxygenase 1##BC027882|IDO1|3620|indoleamine 2,3-dioxygenase 1##X17668|IDO1|3620|indoleamine 2,3-dioxygenase 1##AY221100|IDO1|3620|indoleamine 2,3-dioxygenase 1##JF772862|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2##BC021672|C8orf4|56892|chromosome 8 open reading frame 4##NM_020130|C8orf4|56892|chromosome 8 open reading frame 4##BC020623|C8orf4|56892|chromosome 8 open reading frame 4##AF268037|C8orf4|56892|chromosome 8 open reading frame 4##AK026240|C8orf4|56892|chromosome 8 open reading frame 4##EU832636|C8orf4|56892|chromosome 8 open reading frame 4##EU832712|C8orf4|56892|chromosome 8 open reading frame 4	0.99888	0.0	
chr8	81977445	81977625	reg1007216.p1	5.993	+	AK131274 NM_001033723	-190520	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-579051	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-893765	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	46779	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	215238	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	382134	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	1.294107	0.0	denovo_WM_7:4:0.479	denovo_WM_7:6:0.382	denovo_WM_7:34:0.434
chr10	112563066	112563196	reg1005044.p1	5.992	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-159002	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-219016	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-235639	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	68481	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	68583	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	115565	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	0.0	0.0	
chr14	66870016	66870142	reg1006311.p1	5.992	+	TSC_hg19_v1_chr14_+_65879739 BC025385	-990354	+	TSC_hg19_v1_chr14_+_65879525 Y17978 Y17979	-990591	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	-990753	-	AB037806 AF272663 NM_001024218 NM_020806	104045	+	TSC_hg19_v1_chr14_+_66974859 AK025169	104774	+	TSC_hg19_v1_chr14_+_66974870 AK315569	104790	+	BC025385|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17978|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17979|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431##AB037806|GPHN|10243|gephyrin##AF272663|GPHN|10243|gephyrin##NM_001024218|GPHN|10243|gephyrin##NM_020806|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin	0.0	0.949218	CTCF.p2:39:0.949
chr2	38305191	38305347	reg1008050.p2	5.992	+	TSC_hg19_v1_chr2_-_38303315 AK312686 NM_000104	-1949	-	U03688 BC012049 TSC_hg19_v1_chr2_-_38303294 AK297039 AK303862	-1987	-	NM_001170793 NM_144713 AK057516 AF435956	-127669	+	AK316179 TSC_hg19_v1_chr2_-_38525609	220300	-	TSC_hg19_v1_chr2_-_38604411 BC053508 AK026946 AK225190 AK303985 AK308894	299135	-	TSC_hg19_v1_chr2_-_38604430 NM_001135673 NM_022374	299162	-	AK312686|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##NM_000104|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##U03688|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##BC012049|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##AK303862|CYP1B1|1545|cytochrome P450, family 1, subfamily B, polypeptide 1##NM_001170793|FAM82A1|151393|family with sequence similarity 82, member A1##NM_144713|FAM82A1|151393|family with sequence similarity 82, member A1##AK057516|FAM82A1|151393|family with sequence similarity 82, member A1##AF435956|FAM82A1|151393|family with sequence similarity 82, member A1##AK316179|ATL2|64225|atlastin GTPase 2##BC053508|ATL2|64225|atlastin GTPase 2##AK026946|ATL2|64225|atlastin GTPase 2##AK225190|ATL2|64225|atlastin GTPase 2##AK303985|ATL2|64225|atlastin GTPase 2##AK308894|ATL2|64225|atlastin GTPase 2##NM_001135673|ATL2|64225|atlastin GTPase 2##NM_022374|ATL2|64225|atlastin GTPase 2	1.009245	0.0	
chr1	198125573	198125743	reg1006131.p2	5.990	+	TSC_hg19_v1_chr1_+_197886502 AY273889 NM_020204	-239151	+	AJ296272 NM_001014434 AJ277915	-244019	+	BC130608 BC130634 NM_001024594 HQ258066 BC038214	-253927	+	TSC_hg19_v1_chr1_+_198126162 NM_133494 AK313411	396	+	NM_133262 NM_133326	384416	-	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	482515	+	AY273889|LHX9|56956|LIM homeobox 9##NM_020204|LHX9|56956|LIM homeobox 9##AJ296272|LHX9|56956|LIM homeobox 9##NM_001014434|LHX9|56956|LIM homeobox 9##AJ277915|LHX9|56956|LIM homeobox 9##BC130608|C1orf53|388722|chromosome 1 open reading frame 53##BC130634|C1orf53|388722|chromosome 1 open reading frame 53##NM_001024594|C1orf53|388722|chromosome 1 open reading frame 53##HQ258066|C1orf53|388722|chromosome 1 open reading frame 53##BC038214|C1orf53|388722|chromosome 1 open reading frame 53##NM_133494|NEK7|140609|NIMA (never in mitosis gene a)-related kinase 7##AK313411|NEK7|140609|NIMA (never in mitosis gene a)-related kinase 7##NM_133262|ATP6V1G3|127124|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3##NM_133326|ATP6V1G3|127124|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	0.999416	0.0	denovo_WM_7:13:0.304	denovo_WM_7:14:0.426
chr1	243277663	243277817	reg1007966.p2	5.990	+	AK098092 NM_152666	-589743	-	AK091691 AX747130 AK307857 AK295421 AY461578 NM_001195811 NM_001195812	-664970	-	BC132986 BC132988 AF276659 BC127722 NM_001004343	-1115366	-	TSC_hg19_v1_chr1_-_243418369 AK296812 AK299552	140616	-	TSC_hg19_v1_chr1_-_243418566 AK310003 BC050722	140832	-	TSC_hg19_v1_chr1_-_243418675 NM_001042404 NM_001042405 NM_014812	140951	-	AK098092|PLD5|200150|phospholipase D family, member 5##NM_152666|PLD5|200150|phospholipase D family, member 5##AK091691|PLD5|200150|phospholipase D family, member 5##AK307857|PLD5|200150|phospholipase D family, member 5##AK295421|PLD5|200150|phospholipase D family, member 5##AY461578|PLD5|200150|phospholipase D family, member 5##NM_001195811|PLD5|200150|phospholipase D family, member 5##NM_001195812|PLD5|200150|phospholipase D family, member 5##BC132986|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##BC132988|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##AF276659|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##BC127722|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##NM_001004343|MAP1LC3C|440738|microtubule-associated protein 1 light chain 3 gamma##AK296812|CEP170|9859|centrosomal protein 170kDa##AK299552|CEP170|9859|centrosomal protein 170kDa##AK310003|CEP170|9859|centrosomal protein 170kDa##BC050722|CEP170|9859|centrosomal protein 170kDa##NM_001042404|CEP170|9859|centrosomal protein 170kDa##NM_001042405|CEP170|9859|centrosomal protein 170kDa##NM_014812|CEP170|9859|centrosomal protein 170kDa	0.015692	0.0	
chr17	57902491	57902561	reg1002941.p2	5.990	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-117453	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-117491	+	BC009758 TSC_hg19_v1_chr17_+_57785014 AK024969	-117510	+	TSC_hg19_v1_chr17_+_57915291 AK310806	12780	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	67665	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	67936	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##BC009758|VMP1|81671|vacuole membrane protein 1##AK024969|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	1.18575	0.0	denovo_WM_7:-67:0.205
chr7	6415730	6415841	reg1003323.p3	5.990	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	-1558	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-27275	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-103554	-	TSC_hg19_v1_chr7_-_6474593 AK298910	58805	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	71754	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	71823	-	NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta	0.999675	0.0	
chr20	42836985	42837160	reg1008115.p1	5.989	+	BC029957 NM_020433 NM_175913	-20855	-	AL132999 TSC_hg19_v1_chr20_-_42815818 AK304863	-21279	-	NM_001098798	-262537	+	TSC_hg19_v1_chr20_-_42839412 BC064973 AK315155 AF217514	2284	-	TSC_hg19_v1_chr20_-_42839428 AF151041 AF161517 AL133000 AK000476 NM_016470	2412	-	BC048277 BC067866 BC094781 BC032458 BC036500 AK055067 BC019858 TSC_hg19_v1_chr20_+_42839737	2599	+	BC029957|JPH2|57158|junctophilin 2##NM_020433|JPH2|57158|junctophilin 2##NM_175913|JPH2|57158|junctophilin 2##AL132999|JPH2|57158|junctophilin 2##AK304863|JPH2|57158|junctophilin 2##NM_001098798|TOX2|84969|TOX high mobility group box family member 2##BC064973|C20orf111|51526|chromosome 20 open reading frame 111##AK315155|C20orf111|51526|chromosome 20 open reading frame 111##AF217514|C20orf111|51526|chromosome 20 open reading frame 111##AF151041|C20orf111|51526|chromosome 20 open reading frame 111##AF161517|C20orf111|51526|chromosome 20 open reading frame 111##AL133000|C20orf111|51526|chromosome 20 open reading frame 111##AK000476|C20orf111|51526|chromosome 20 open reading frame 111##NM_016470|C20orf111|51526|chromosome 20 open reading frame 111##BC048277|LOC100505783|100505783|uncharacterized LOC100505783##BC067866|LOC100505783|100505783|uncharacterized LOC100505783##BC094781|LOC100505783|100505783|uncharacterized LOC100505783##BC032458|LOC100505783|100505783|uncharacterized LOC100505783##BC036500|LOC100505783|100505783|uncharacterized LOC100505783##AK055067|LOC100505783|100505783|uncharacterized LOC100505783##BC019858|LOC100505783|100505783|uncharacterized LOC100505783	0.993049	0.0	denovo_WM_7:0:0.314	denovo_WM_7:0:0.314	denovo_WM_7:-1:0.314
chr10	22894223	22894403	reg1001909.p1	5.988	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-168314	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-259857	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-284148	+	AK294817 TSC_hg19_v1_chr10_-_23003038	108724	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	109177	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	322668	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	0.0	0.0	
chr15	48874622	48874779	reg1009418.p1	5.988	+	TSC_hg19_v1_chr15_+_48624363 AK291515 NM_001948 AK312122 U31930 U62891 L11877 AB049113 M89913 DQ891191 DQ894375 CR541720 CR541781	-250299	+	TSC_hg19_v1_chr15_+_48623625 NM_001025248 NM_001025249 AK000629 BC070339 BC110377 AK298464 U90223 AB528727	-251036	+	NM_000338 NM_001184832 AK129998 AK298312 BC020860	-376203	+	TSC_hg19_v1_chr15_-_48937070 L13923	62383	-	TSC_hg19_v1_chr15_-_48937907 BC146854 AK304737 BC094721 NM_000138 X63556	63229	-	BC117182 TSC_hg19_v1_chr15_-_49103277 AB020719 BC069186 AK303805 BX648822 BC107721 NM_001194998 NM_014985	228562	-	AK291515|DUT|1854|deoxyuridine triphosphatase##NM_001948|DUT|1854|deoxyuridine triphosphatase##AK312122|DUT|1854|deoxyuridine triphosphatase##U31930|DUT|1854|deoxyuridine triphosphatase##U62891|DUT|1854|deoxyuridine triphosphatase##L11877|DUT|1854|deoxyuridine triphosphatase##AB049113|DUT|1854|deoxyuridine triphosphatase##M89913|DUT|1854|deoxyuridine triphosphatase##DQ891191|DUT|1854|deoxyuridine triphosphatase##DQ894375|DUT|1854|deoxyuridine triphosphatase##CR541720|DUT|1854|deoxyuridine triphosphatase##CR541781|DUT|1854|deoxyuridine triphosphatase##NM_001025248|DUT|1854|deoxyuridine triphosphatase##NM_001025249|DUT|1854|deoxyuridine triphosphatase##AK000629|DUT|1854|deoxyuridine triphosphatase##BC070339|DUT|1854|deoxyuridine triphosphatase##BC110377|DUT|1854|deoxyuridine triphosphatase##AK298464|DUT|1854|deoxyuridine triphosphatase##U90223|DUT|1854|deoxyuridine triphosphatase##NM_000338|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##NM_001184832|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK129998|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK298312|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##L13923|FBN1|2200|fibrillin 1##BC146854|FBN1|2200|fibrillin 1##AK304737|FBN1|2200|fibrillin 1##BC094721|FBN1|2200|fibrillin 1##NM_000138|FBN1|2200|fibrillin 1##X63556|FBN1|2200|fibrillin 1##BC117182|CEP152|22995|centrosomal protein 152kDa##AB020719|CEP152|22995|centrosomal protein 152kDa##BC069186|CEP152|22995|centrosomal protein 152kDa##AK303805|CEP152|22995|centrosomal protein 152kDa##BX648822|CEP152|22995|centrosomal protein 152kDa##BC107721|CEP152|22995|centrosomal protein 152kDa##NM_001194998|CEP152|22995|centrosomal protein 152kDa##NM_014985|CEP152|22995|centrosomal protein 152kDa	0.0	0.0	
chr20	2654839	2654935	reg1007586.p1	5.988	+	TSC_hg19_v1_chr20_-_2644844 BC019037 CU674954 DQ892561 DQ895776 DQ895816 EU831924 EU832019 AK001905 BC001960 NM_006899 NM_174855 NM_174856 AK309488 AK315641 AK300485	-10053	-	AL050094 TSC_hg19_v1_chr20_-_2641583	-13351	-	BC104791 BC104793 NM_006392 TSC_hg19_v1_chr20_+_2633277 AK292721 BX647439 BC035369	-21636	+	TSC_hg19_v1_chr20_+_2673520 AB037863 NM_001110514	18795	+	AK027661 BC032692 AY358956 TSC_hg19_v1_chr20_-_2781253	126356	-	AK075527 BC063430 AK075508 TSC_hg19_v1_chr20_-_2781274 AK315027 NM_001184699 NM_019609	126396	-	BC019037|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##DQ892561|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##DQ895776|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##DQ895816|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##EU831924|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##EU832019|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##AK001905|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##BC001960|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##NM_006899|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##NM_174855|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##NM_174856|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##AK309488|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##AK315641|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##AK300485|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##AL050094|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta##BC104791|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BC104793|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##NM_006392|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##AK292721|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BX647439|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BC035369|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##AB037863|EBF4|57593|early B-cell factor 4##NM_001110514|EBF4|57593|early B-cell factor 4##AK027661|CPXM1|56265|carboxypeptidase X (M14 family), member 1##BC032692|CPXM1|56265|carboxypeptidase X (M14 family), member 1##AY358956|CPXM1|56265|carboxypeptidase X (M14 family), member 1##AK075527|CPXM1|56265|carboxypeptidase X (M14 family), member 1##BC063430|CPXM1|56265|carboxypeptidase X (M14 family), member 1##AK075508|CPXM1|56265|carboxypeptidase X (M14 family), member 1##AK315027|CPXM1|56265|carboxypeptidase X (M14 family), member 1##NM_001184699|CPXM1|56265|carboxypeptidase X (M14 family), member 1##NM_019609|CPXM1|56265|carboxypeptidase X (M14 family), member 1	0.993824	0.0	denovo_WM_7:-79:0.244	denovo_WM_7:-80:0.244	denovo_WM_7:-81:0.244	denovo_WM_7:-82:0.244
chr1	118197309	118197470	reg1008179.p2	5.987	+	TSC_hg19_v1_chr1_+_118148669 AK000209 BC036516 BC131726	-48710	+	TSC_hg19_v1_chr1_+_118148542 NM_017709	-48803	+	TSC_hg19_v1_chr1_+_117910083 BC052954 AK307842 NM_006699 BC063300	-287296	+	TSC_hg19_v1_chr1_-_118472186 BC013132	274793	-	AK000149 BC013324 TSC_hg19_v1_chr1_-_118472244 NM_001135589 NM_017686	274864	-	BC058836 TSC_hg19_v1_chr1_+_118472357	274964	+	AK000209|FAM46C|54855|family with sequence similarity 46, member C##BC036516|FAM46C|54855|family with sequence similarity 46, member C##BC131726|FAM46C|54855|family with sequence similarity 46, member C##NM_017709|FAM46C|54855|family with sequence similarity 46, member C##BC052954|MAN1A2|10905|mannosidase, alpha, class 1A, member 2##AK307842|MAN1A2|10905|mannosidase, alpha, class 1A, member 2##NM_006699|MAN1A2|10905|mannosidase, alpha, class 1A, member 2##BC063300|MAN1A2|10905|mannosidase, alpha, class 1A, member 2##BC013132|GDAP2|54834|ganglioside induced differentiation associated protein 2##AK000149|GDAP2|54834|ganglioside induced differentiation associated protein 2##BC013324|GDAP2|54834|ganglioside induced differentiation associated protein 2##NM_001135589|GDAP2|54834|ganglioside induced differentiation associated protein 2##NM_017686|GDAP2|54834|ganglioside induced differentiation associated protein 2##BC058836|WDR3|10885|WD repeat domain 3	0.0	0.0	
chr17	5146367	5146511	reg1000742.p2	5.986	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-8338	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-51059	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-51266	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	39227	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	176486	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	176521	+	DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein	0.0	0.0	
chr5	98362977	98363157	reg1007372.p1	5.986	+	BC054860 BC117134 NM_001270 AF006513	-100839	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	-258026	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-1844080	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	1508006	+	AF529367 TSC_hg19_v1_chr5_+_99871306	1508203	+	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	1875861	-	BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF529367|FAM174A|345757|family with sequence similarity 174, member A##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	0.154482	0.0	
chr10	12117270	12117418	reg1005847.p2	5.985	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	-6337	+	TSC_hg19_v1_chr10_+_12110952 NM_018706	-6408	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-32262	-	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	54309	+	TSC_hg19_v1_chr10_-_12237861 AF218818 AK291131 AF155832 AF161464	120522	-	TSC_hg19_v1_chr10_+_12237965 NM_006023 D14878 AK225634	120617	+	BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF218818|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AK291131|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF155832|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF161464|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##NM_006023|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##D14878|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK225634|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)	0.398057	0.0	
chr3	179064404	179064533	reg1006609.p1	5.985	+	AB097862 AF003924 NM_016331	-22918	+	TSC_hg19_v1_chr3_+_179040818 BC026181	-23602	+	AK304837 NM_001163677 NM_171828	-79655	-	BC040557 NM_033540 TSC_hg19_v1_chr3_+_179065522 BC020661 AB043589 AK000700 AK314306	1046	+	BC000873 TSC_hg19_v1_chr3_-_179169227 AK297174	104776	-	TSC_hg19_v1_chr3_-_179169361 AK001890 NM_021629	104897	-	AB097862|ZNF639|51193|zinc finger protein 639##AF003924|ZNF639|51193|zinc finger protein 639##NM_016331|ZNF639|51193|zinc finger protein 639##BC026181|ZNF639|51193|zinc finger protein 639##AK304837|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_001163677|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171828|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC040557|MFN1|55669|mitofusin 1##NM_033540|MFN1|55669|mitofusin 1##BC020661|MFN1|55669|mitofusin 1##AB043589|MFN1|55669|mitofusin 1##AK000700|MFN1|55669|mitofusin 1##AK314306|MFN1|55669|mitofusin 1##BC000873|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK297174|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK001890|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##NM_021629|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4	1.992625	0.0	denovo_WM_7:79:0.237	denovo_WM_7:80:0.203	denovo_WM_7:99:0.210	denovo_WM_7:100:0.243
chr14	68110525	68110675	reg1006373.p1	5.982	+	U75667 AK312484 TSC_hg19_v1_chr14_+_68086666 D86724 BC001350 U82256 AB587380 CR536550	-23926	+	AY074489 BC008464 TSC_hg19_v1_chr14_+_68086636	-23964	+	TSC_hg19_v1_chr14_+_68086582 BC029050 NM_001172	-24011	+	BT019348 BT019960 CR456757 CR542095 CU678400 AF035824 TSC_hg19_v1_chr14_-_68141319 AK310839	30665	-	TSC_hg19_v1_chr14_-_68141331 AK291689 AK316572 BC003142 BC001598 AF060902 NM_006370	30864	-	CR457180 CU680026 CU691474 CU693194 BC011727 BC000112 TSC_hg19_v1_chr14_-_68162477 AK289427 BC026274 DQ426886 AK057195 AK293355 BC051291 AF151840 AF167438 AF395068 AK307500 AK314465 BC037302 AK074749 NM_001252650 NM_016026	51864	-	U75667|ARG2|384|arginase, type II##AK312484|ARG2|384|arginase, type II##D86724|ARG2|384|arginase, type II##BC001350|ARG2|384|arginase, type II##U82256|ARG2|384|arginase, type II##CR536550|ARG2|384|arginase, type II##AY074489|ARG2|384|arginase, type II##BC008464|ARG2|384|arginase, type II##BC029050|ARG2|384|arginase, type II##NM_001172|ARG2|384|arginase, type II##BT019348|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##BT019960|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##CR456757|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##CR542095|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AF035824|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AK310839|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AK291689|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AK316572|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##BC003142|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AF060902|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##NM_006370|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##CR457180|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC011727|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC000112|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK289427|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC026274|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##DQ426886|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK057195|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK293355|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC051291|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF151840|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF167438|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF395068|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK307500|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK314465|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC037302|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK074749|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_001252650|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_016026|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)	1.99918	0.0	denovo_WM_7:-6:0.218	denovo_WM_7:-7:0.631	denovo_WM_7:-22:0.661
chr2	10264131	10264287	reg1008246.p1	5.982	+	TSC_hg19_v1_chr2_+_10262865 NM_001034 AK092671 AK123010 AK313719 BC030154 BC001886 DQ891863 DQ895052 AB529158	-1320	+	NM_001165931 S40301 X59618 TSC_hg19_v1_chr2_+_10262805	-1450	+	TSC_hg19_v1_chr2_-_10220367 AB590068 AF544983 NM_001037160	-43780	-	BC093999 BC094001 NM_182626	17770	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	178840	+	AK000596 NM_134421	179616	+	NM_001034|RRM2|6241|ribonucleotide reductase M2##AK092671|RRM2|6241|ribonucleotide reductase M2##AK123010|RRM2|6241|ribonucleotide reductase M2##AK313719|RRM2|6241|ribonucleotide reductase M2##BC030154|RRM2|6241|ribonucleotide reductase M2##BC001886|RRM2|6241|ribonucleotide reductase M2##DQ891863|RRM2|6241|ribonucleotide reductase M2##DQ895052|RRM2|6241|ribonucleotide reductase M2##NM_001165931|RRM2|6241|ribonucleotide reductase M2##S40301|RRM2|6241|ribonucleotide reductase M2##X59618|RRM2|6241|ribonucleotide reductase M2##AF544983|CYS1|192668|cystin 1##NM_001037160|CYS1|192668|cystin 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1	0.998994	0.0	denovo_WM_7:34:0.310	denovo_WM_7:35:0.310	denovo_WM_7:36:0.310
chr11	63438850	63439019	reg1006630.p1	5.981	+	TSC_hg19_v1_chr11_-_63438892 AK023383 CU687312 AL117600 BC005096	-81	-	NM_001128203 TSC_hg19_v1_chr11_-_63381941	-56993	-	AK313075 NM_007069 TSC_hg19_v1_chr11_-_63381909	-57025	-	TSC_hg19_v1_chr11_-_63439066 NM_015459 CR936784 BC077727	136	-	TSC_hg19_v1_chr11_+_63448971 NM_006054 NM_201428 NM_201429 NM_201430 AY427821 AY750848 AK309766 AK075412 AK297533 AK304100 AK307811 BC011394 AK295534 AK308083 BC022993 AB209771 AF059524 AK222898 AF119297 BC100822 BC100823 BC118550 BC118628 AK295758 BC010556 BC105982 BC000634 AK295361 BC105981 AK297529 AB591013 CU679745 AK127079	10112	+	NM_001144936 TSC_hg19_v1_chr11_-_63536248	97262	-	AK023383|ATL3|25923|atlastin GTPase 3##AL117600|ATL3|25923|atlastin GTPase 3##NM_001128203|PLA2G16|11145|phospholipase A2, group XVI##AK313075|PLA2G16|11145|phospholipase A2, group XVI##NM_007069|PLA2G16|11145|phospholipase A2, group XVI##NM_015459|ATL3|25923|atlastin GTPase 3##CR936784|ATL3|25923|atlastin GTPase 3##BC077727|ATL3|25923|atlastin GTPase 3##NM_006054|RTN3|10313|reticulon 3##NM_201428|RTN3|10313|reticulon 3##NM_201429|RTN3|10313|reticulon 3##NM_201430|RTN3|10313|reticulon 3##AY427821|RTN3|10313|reticulon 3##AY750848|RTN3|10313|reticulon 3##AK309766|RTN3|10313|reticulon 3##AK075412|RTN3|10313|reticulon 3##AK297533|RTN3|10313|reticulon 3##AK304100|RTN3|10313|reticulon 3##AK307811|RTN3|10313|reticulon 3##BC011394|RTN3|10313|reticulon 3##AK295534|RTN3|10313|reticulon 3##AK308083|RTN3|10313|reticulon 3##BC022993|RTN3|10313|reticulon 3##AB209771|RTN3|10313|reticulon 3##AF059524|RTN3|10313|reticulon 3##AK222898|RTN3|10313|reticulon 3##AF119297|RTN3|10313|reticulon 3##BC100822|RTN3|10313|reticulon 3##BC100823|RTN3|10313|reticulon 3##BC118550|RTN3|10313|reticulon 3##BC118628|RTN3|10313|reticulon 3##AK295758|RTN3|10313|reticulon 3##BC010556|RTN3|10313|reticulon 3##BC105982|RTN3|10313|reticulon 3##BC000634|RTN3|10313|reticulon 3##AK295361|RTN3|10313|reticulon 3##BC105981|RTN3|10313|reticulon 3##AK297529|RTN3|10313|reticulon 3##AK127079|RTN3|10313|reticulon 3##NM_001144936|C11orf95|65998|chromosome 11 open reading frame 95	0.0	0.103354	
chr13	34651350	34651490	reg1009366.p1	5.981	+	TSC_hg19_v1_chr13_+_34392276 AK296527 BC000149 AK222572 AK312544 L07541 AB528646 DQ890955 DQ894118 BT019668	-259136	+	NM_002915 NM_181558 TSC_hg19_v1_chr13_+_34392248	-259193	+	TSC_hg19_v1_chr13_-_34250932 BX647695 NM_001243476	-400485	-	TSC_hg19_v1_chr13_+_35516429 NM_015678 AF467288	865038	+	BC028170 AB593021 TSC_hg19_v1_chr13_-_36050827 AB593022 AK313185 AB073388 NM_005584	1399376	-	AK294737 NM_001204197 TSC_hg19_v1_chr13_+_36050945 AK315939	1399505	+	AK296527|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BC000149|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK222572|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK312544|RFC3|5983|replication factor C (activator 1) 3, 38kDa##L07541|RFC3|5983|replication factor C (activator 1) 3, 38kDa##DQ890955|RFC3|5983|replication factor C (activator 1) 3, 38kDa##DQ894118|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BT019668|RFC3|5983|replication factor C (activator 1) 3, 38kDa##NM_002915|RFC3|5983|replication factor C (activator 1) 3, 38kDa##NM_181558|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BX647695|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243476|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_015678|NBEA|26960|neurobeachin##AF467288|NBEA|26960|neurobeachin##BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK294737|NBEA|26960|neurobeachin##NM_001204197|NBEA|26960|neurobeachin##AK315939|NBEA|26960|neurobeachin	0.018838	0.973729	CTCF.p2:26:0.974
chr17	34361288	34361437	reg1008861.p1	5.981	+	AB590848 U67128 U85767 BC093970 BC143310 NM_005064 NM_145898 U58913	-16394	-	NM_032965 TSC_hg19_v1_chr17_-_34329160	-32240	-	TSC_hg19_v1_chr17_-_34328607 BC140941	-32729	-	AB000221 NM_002988 Y13710 BC096124 BC096125 BC096126 BC096127 BC069700 AB590849 AB451458 CR407660	30308	+	D63785 AB463487 BC171831 BC171891 BC071834 M25315 D00044 M23452 X03754 NM_002983	56083	-	AY766446 AY766448 NM_002984 BC107433 M23502 BC104226 BC104227 M25316 X53683 BC027961 X16166 AY312578 CR542119 M57503	69905	+	U67128|CCL23|6368|chemokine (C-C motif) ligand 23##U85767|CCL23|6368|chemokine (C-C motif) ligand 23##BC093970|CCL23|6368|chemokine (C-C motif) ligand 23##BC143310|CCL23|6368|chemokine (C-C motif) ligand 23##NM_005064|CCL23|6368|chemokine (C-C motif) ligand 23##NM_145898|CCL23|6368|chemokine (C-C motif) ligand 23##U58913|CCL23|6368|chemokine (C-C motif) ligand 23##NM_032965|CCL15|6359|chemokine (C-C motif) ligand 15##BC140941|CCL14-CCL15|348249|CCL14-CCL15 readthrough##AB000221|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##NM_002988|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##Y13710|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096124|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096125|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096126|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096127|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC069700|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##AB451458|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##CR407660|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##D63785|CCL3|6348|chemokine (C-C motif) ligand 3##BC171831|CCL3|6348|chemokine (C-C motif) ligand 3##BC171891|CCL3|6348|chemokine (C-C motif) ligand 3##BC071834|CCL3|6348|chemokine (C-C motif) ligand 3##M25315|CCL3|6348|chemokine (C-C motif) ligand 3##D00044|CCL3|6348|chemokine (C-C motif) ligand 3##M23452|CCL3|6348|chemokine (C-C motif) ligand 3##X03754|CCL3|6348|chemokine (C-C motif) ligand 3##NM_002983|CCL3|6348|chemokine (C-C motif) ligand 3##AY766446|CCL4|6351|chemokine (C-C motif) ligand 4##AY766448|CCL4|6351|chemokine (C-C motif) ligand 4##NM_002984|CCL4|6351|chemokine (C-C motif) ligand 4##BC107433|CCL4|6351|chemokine (C-C motif) ligand 4##M23502|CCL4|6351|chemokine (C-C motif) ligand 4##BC104226|CCL4|6351|chemokine (C-C motif) ligand 4##BC104227|CCL4|6351|chemokine (C-C motif) ligand 4##M25316|CCL4|6351|chemokine (C-C motif) ligand 4##X53683|CCL4|6351|chemokine (C-C motif) ligand 4##BC027961|CCL4|6351|chemokine (C-C motif) ligand 4##X16166|CCL4|6351|chemokine (C-C motif) ligand 4##AY312578|CCL4|6351|chemokine (C-C motif) ligand 4##CR542119|CCL4|6351|chemokine (C-C motif) ligand 4##M57503|CCL4|6351|chemokine (C-C motif) ligand 4	0.0	0.0	
chr6	3389112	3389242	reg1008039.p1	5.981	+	TSC_hg19_v1_chr6_-_3272352 BC090851 BC022217	-116747	-	TSC_hg19_v1_chr6_+_3259232 AK126623 AK095683	-129938	+	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	-130019	+	BC128580 BC128581 BC038748 NM_021945	56030	-	TSC_hg19_v1_chr6_-_3456513 AL110245	67337	-	BC040876 NM_015482	67586	-	BC090851|SLC22A23|63027|solute carrier family 22, member 23##BC022217|SLC22A23|63027|solute carrier family 22, member 23##AK126623|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK095683|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##BC128580|SLC22A23|63027|solute carrier family 22, member 23##BC128581|SLC22A23|63027|solute carrier family 22, member 23##BC038748|SLC22A23|63027|solute carrier family 22, member 23##NM_021945|SLC22A23|63027|solute carrier family 22, member 23##AL110245|SLC22A23|63027|solute carrier family 22, member 23##BC040876|SLC22A23|63027|solute carrier family 22, member 23##NM_015482|SLC22A23|63027|solute carrier family 22, member 23	0.0	0.0	
chr1	94215133	94215258	reg1006347.p1	5.980	+	U92715 TSC_hg19_v1_chr1_-_94147394 BC039895 AF124250 NM_003567	-67868	-	TSC_hg19_v1_chr1_+_94057602 BC084562	-157588	+	TSC_hg19_v1_chr1_+_94057524 AK307291	-157655	+	TSC_hg19_v1_chr1_-_94344731 HQ258657 AK302909 AY394925 U15552 BC063040 BC047688	129519	-	AK222722 AK292379 AK308808 TSC_hg19_v1_chr1_-_94344763 BC001784 BC130622 AB046574 BC020634 AY336729 NM_014597	129553	-	TSC_hg19_v1_chr1_-_94374956 BC041809 L35546	159767	-	U92715|BCAR3|8412|breast cancer anti-estrogen resistance 3##BC039895|BCAR3|8412|breast cancer anti-estrogen resistance 3##AF124250|BCAR3|8412|breast cancer anti-estrogen resistance 3##NM_003567|BCAR3|8412|breast cancer anti-estrogen resistance 3##BC084562|LOC100129046|100129046|uncharacterized LOC100129046##AK307291|LOC100129046|100129046|uncharacterized LOC100129046##HQ258657|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK302909|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AY394925|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##U15552|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC063040|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC047688|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK222722|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK292379|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK308808|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC001784|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC130622|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AB046574|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC020634|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AY336729|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##NM_014597|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC041809|GCLM|2730|glutamate-cysteine ligase, modifier subunit##L35546|GCLM|2730|glutamate-cysteine ligase, modifier subunit	0.989205	0.0	denovo_WM_7:-42:0.233	denovo_WM_7:-43:0.233	denovo_WM_7:-44:0.233	denovo_WM_7:-45:0.233
chr5	179104923	179105103	reg1007187.p1	5.980	+	BC043435 BC040992 BC130442 BC130444 BC144274 BC144275 NM_001142306	-32988	-	TSC_hg19_v1_chr5_-_179051599 AK124530	-53386	-	TSC_hg19_v1_chr5_-_179050676 NM_005520	-54312	-	NM_001164444	2961	-	TSC_hg19_v1_chr5_+_179125381 AK294702	20421	+	TSC_hg19_v1_chr5_+_179125927 NM_001024649 NM_001746	20851	+	BC043435|C5orf60|285679|chromosome 5 open reading frame 60##BC040992|C5orf60|285679|chromosome 5 open reading frame 60##BC130442|C5orf60|285679|chromosome 5 open reading frame 60##BC130444|C5orf60|285679|chromosome 5 open reading frame 60##BC144274|C5orf60|285679|chromosome 5 open reading frame 60##BC144275|C5orf60|285679|chromosome 5 open reading frame 60##NM_001142306|C5orf60|285679|chromosome 5 open reading frame 60##AK124530|HNRNPH1|3187|heterogeneous nuclear ribonucleoprotein H1 (H)##NM_005520|HNRNPH1|3187|heterogeneous nuclear ribonucleoprotein H1 (H)##NM_001164444|CBY3|646019|chibby homolog 3 (Drosophila)##AK294702|CANX|821|calnexin##NM_001024649|CANX|821|calnexin##NM_001746|CANX|821|calnexin	0.999352	0.0	
chr20	10539648	10539826	reg1006348.p2	5.979	+	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-123761	+	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	-124898	-	AF221993 NM_018848	-127168	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	114467	-	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	114832	-	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	1331712	+	BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3	0.991009	0.0	denovo_WM_7:45:0.787
chr12	57145703	57145848	reg1007963.p1	5.978	+	TSC_hg19_v1_chr12_-_57119316 NM_001113202 NM_001113203	-26457	-	BC105120 BC105122 TSC_hg19_v1_chr12_-_57119084 BC106041 AF054187 AY605660 AY911673 X80909 AK311904 AK096699 AK223085 AK293209	-26733	-	TSC_hg19_v1_chr12_-_57118269 AB463919 CR450295 AY034001	-27491	-	AB528338 CU675073 EU176421 EU176762 TSC_hg19_v1_chr12_-_57146108 AK223391 AK314866 X74330 BC005266 NM_000946	351	-	AK313423 BC020710 NM_003725 TSC_hg19_v1_chr12_+_57157107 U89281 AF223225	11336	+	AY044434 BC101551 BC101553 AK122782 NM_148897	182341	-	NM_001113202|NACA|4666|nascent polypeptide-associated complex alpha subunit##NM_001113203|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105120|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105122|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC106041|NACA|4666|nascent polypeptide-associated complex alpha subunit##AF054187|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY605660|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY911673|NACA|4666|nascent polypeptide-associated complex alpha subunit##X80909|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK311904|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK096699|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK223085|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK293209|NACA|4666|nascent polypeptide-associated complex alpha subunit##CR450295|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY034001|NACA|4666|nascent polypeptide-associated complex alpha subunit##EU176421|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##EU176762|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##AK223391|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##AK314866|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##X74330|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##BC005266|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##NM_000946|PRIM1|5557|primase, DNA, polypeptide 1 (49kDa)##AK313423|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##BC020710|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##NM_003725|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##U89281|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##AF223225|HSD17B6|8630|hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)##AY044434|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##BC101551|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##BC101553|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##AK122782|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7##NM_148897|SDR9C7|121214|short chain dehydrogenase/reductase family 9C, member 7	1.807439	0.0	denovo_WM_7:-5:0.737	denovo_WM_7:-20:0.722
chr12	745783	745963	reg1007752.p1	5.977	+	AB089940 NM_173593	-176331	+	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	-235092	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-247271	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	6305	+	TSC_hg19_v1_chr12_-_752800 AK298043	6946	-	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	26842	-	AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2	0.895417	0.0	denovo_WM_7:24:0.835
chr1	28929251	28929367	reg1001464.p1	5.977	+	NM_001193532 AK026009	-10293	+	BC033175 NM_152304 AK312176	-10567	+	BC064589 BC068048 AK092096 BC045792 TSC_hg19_v1_chr1_-_28908385	-20939	-	BC011986 TSC_hg19_v1_chr1_-_28969617 U57693 X84002 AK310097 NM_001135218 NM_005644	40271	-	TSC_hg19_v1_chr1_+_28995244 NM_006582 NM_024482 AK000892	65920	+	BC001473 AK315195 AK315436 AF173868 AF203694 AK023126 TSC_hg19_v1_chr1_+_28995361	66019	+	NM_001193532|RAB42|115273|RAB42, member RAS oncogene family##BC033175|RAB42|115273|RAB42, member RAS oncogene family##NM_152304|RAB42|115273|RAB42, member RAS oncogene family##AK312176|RAB42|115273|RAB42, member RAS oncogene family##BC064589|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC068048|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##AK092096|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC045792|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC011986|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##U57693|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##X84002|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##AK310097|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_001135218|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_005644|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_006582|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_024482|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK000892|GMEB1|10691|glucocorticoid modulatory element binding protein 1##BC001473|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315195|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315436|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF173868|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF203694|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK023126|GMEB1|10691|glucocorticoid modulatory element binding protein 1	1.946763	0.0	denovo_WM_7:-4:0.736	denovo_WM_7:12:0.675
chr12	95337738	95337850	reg1006850.p2	5.977	+	EU831778 EU831856 BC040535 NM_020698	-293530	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	-484062	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	-484152	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	59676	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	59722	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	129504	-	EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1	1.907432	0.0	denovo_WM_7:50:0.863	denovo_WM_7:65:0.436	denovo_WM_7:66:0.522
chr19	5907631	5907739	reg1007438.p2	5.977	+	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	-2816	+	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	-3678	-	AJ539081 TSC_hg19_v1_chr19_-_5903795 AX775861 BC069045 AY726561 AK127692 AK291087	-3925	-	AK226026 NM_004058 NM_080590 BC080599 BC019065 BC101513 BC104766 X97966 BC011961	6656	+	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	70427	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	70466	-	NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AJ539081|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC069045|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AY726561|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK127692|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK226026|CAPS|828|calcyphosine##NM_004058|CAPS|828|calcyphosine##NM_080590|CAPS|828|calcyphosine##BC080599|CAPS|828|calcyphosine##BC019065|CAPS|828|calcyphosine##BC101513|CAPS|828|calcyphosine##BC104766|CAPS|828|calcyphosine##X97966|CAPS|828|calcyphosine##BC011961|CAPS|828|calcyphosine##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3	1.022694	0.0	
chr2	75064726	75064862	reg1007810.p1	5.977	+	TSC_hg19_v1_chr2_-_75062285 BC013295	-2543	-	TSC_hg19_v1_chr2_+_75061273 AF148513 BC021116 BC064369 AK290357	-3534	+	AF086198 NM_000189	-5013	+	TSC_hg19_v1_chr2_+_75185771 NM_019896 BC031331	120991	+	AK289765 NM_001058 NM_015727	361834	-	BC016157 TSC_hg19_v1_chr2_-_75788066	723253	-	AF148513|HK2|3099|hexokinase 2##BC021116|HK2|3099|hexokinase 2##BC064369|HK2|3099|hexokinase 2##AK290357|HK2|3099|hexokinase 2##AF086198|HK2|3099|hexokinase 2##NM_000189|HK2|3099|hexokinase 2##NM_019896|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC031331|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##AK289765|TACR1|6869|tachykinin receptor 1##NM_001058|TACR1|6869|tachykinin receptor 1##NM_015727|TACR1|6869|tachykinin receptor 1##BC016157|FAM176A|84141|family with sequence similarity 176, member A	0.995132	0.0	
chr11	118785817	118785916	reg1006338.p1	5.976	+	AB094091 NM_182557	-4254	-	NM_032966 X68829	-21766	+	AK291512 NM_001716 BC110352 X68149 AB464488	-31306	+	NM_006760 Y13645 BC113900 AY455312 AB009454	41197	+	AB094092 NM_181721 BC028191 BC125040 BC038969	56612	+	TSC_hg19_v1_chr11_+_118868847 AB094093 NM_198489	82983	+	AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2##AB094092|FOXR1|283150|forkhead box R1##NM_181721|FOXR1|283150|forkhead box R1##BC028191|FOXR1|283150|forkhead box R1##BC125040|FOXR1|283150|forkhead box R1##BC038969|FOXR1|283150|forkhead box R1##AB094093|CCDC84|338657|coiled-coil domain containing 84##NM_198489|CCDC84|338657|coiled-coil domain containing 84	0.767427	0.0	denovo_WM_7:-18:0.741
chr12	111051437	111051585	reg1004981.p1	5.976	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-30385	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-30441	-	TSC_hg19_v1_chr12_-_111020755 AY357944	-30718	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	414	+	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	75447	-	AK293543 NM_001040107	76088	-	AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1	0.992922	0.0	
chr19	10358720	10358806	reg1003531.p1	5.976	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-16757	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-53036	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-53158	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	3884	+	TSC_hg19_v1_chr19_+_10362889 BC009858	4135	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	4229	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	1.345035	0.0	
chr2	113456652	113456813	reg1006321.p1	5.976	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-53212	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-114543	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	-114694	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	65490	-	NM_000575 BC035169	86240	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	137612	-	NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta	1.975398	0.0	denovo_WM_7:48:0.958	denovo_WM_7:-67:0.367	denovo_WM_7:-68:0.343
chr8	23098773	23098918	reg1008074.p1	5.976	+	TSC_hg19_v1_chr8_-_23082664 NM_003844	-16179	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	-16233	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-77350	-	AK097202 NM_152272 BC042050	2313	+	TSC_hg19_v1_chr8_+_23104147 AK315664 AK021776	5290	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	5397	+	NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7##AK315664|CHMP7|91782|charged multivesicular body protein 7##AK021776|CHMP7|91782|charged multivesicular body protein 7##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7	1.662525	0.0	denovo_WM_7:-40:0.278	denovo_WM_7:41:0.208	denovo_WM_7:56:0.200
chr19	39935997	39936166	reg1005468.p2	5.975	+	CU678668 CU687136 DQ893449 DQ896219 TSC_hg19_v1_chr19_-_39926589 BC024970 BC007977 BC071674 M60854 BC095429 BC004324 AK055869 AK315498 D28392 NM_001020	-9505	-	AK024429 NM_022835	-32332	+	TSC_hg19_v1_chr19_+_39899749 AJ227917	-36288	+	NM_001111020 NM_001130824 NM_001130825 TSC_hg19_v1_chr19_+_39936212 AB000516	117	+	TSC_hg19_v1_chr19_+_39936221 AK295137 AK296117 AK302954 Y12790	146	+	TSC_hg19_v1_chr19_+_39936247 U56402	164	+	DQ893449|RPS16|6217|ribosomal protein S16##DQ896219|RPS16|6217|ribosomal protein S16##BC024970|RPS16|6217|ribosomal protein S16##BC007977|RPS16|6217|ribosomal protein S16##BC071674|RPS16|6217|ribosomal protein S16##M60854|RPS16|6217|ribosomal protein S16##BC095429|RPS16|6217|ribosomal protein S16##BC004324|RPS16|6217|ribosomal protein S16##AK055869|RPS16|6217|ribosomal protein S16##AK315498|RPS16|6217|ribosomal protein S16##D28392|RPS16|6217|ribosomal protein S16##NM_001020|RPS16|6217|ribosomal protein S16##AK024429|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_022835|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_001111020|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130824|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130825|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AB000516|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK295137|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK296117|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK302954|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##Y12790|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##U56402|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)	0.0	0.0	
chr22	21942385	21942526	reg1007176.p1	5.975	+	TSC_hg19_v1_chr22_+_21922030 AB528270 CU013202 CU013490 X92962	-20412	+	TSC_hg19_v1_chr22_+_21922021 AK311761 AK291083 AK293179	-20433	+	TSC_hg19_v1_chr22_+_21922018 AJ000519 AK125396 S81003	-20439	+	TSC_hg19_v1_chr22_-_21984304 BC064568 BC053663 BC017281 BC110075 BC110799 BC057814 NM_001017964 BC096754	41860	-	TSC_hg19_v1_chr22_-_21984367 BC133043 BC133047	41945	-	TSC_hg19_v1_chr22_+_21987057 AK302030 AK093365 AX748079 BC033499 NM_152612	44571	+	CU013202|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##CU013490|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##X92962|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK311761|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK291083|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK293179|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AJ000519|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK125396|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##S81003|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##BC064568|YDJC|150223|YdjC homolog (bacterial)##BC053663|YDJC|150223|YdjC homolog (bacterial)##BC017281|YDJC|150223|YdjC homolog (bacterial)##BC110075|YDJC|150223|YdjC homolog (bacterial)##BC110799|YDJC|150223|YdjC homolog (bacterial)##BC057814|YDJC|150223|YdjC homolog (bacterial)##NM_001017964|YDJC|150223|YdjC homolog (bacterial)##BC096754|YDJC|150223|YdjC homolog (bacterial)##BC133043|YDJC|150223|YdjC homolog (bacterial)##BC133047|YDJC|150223|YdjC homolog (bacterial)##AK302030|CCDC116|164592|coiled-coil domain containing 116##AK093365|CCDC116|164592|coiled-coil domain containing 116##BC033499|CCDC116|164592|coiled-coil domain containing 116##NM_152612|CCDC116|164592|coiled-coil domain containing 116	0.0	0.0	
chr2	73902119	73902241	reg1008041.p1	5.975	+	AB019551 BC012626 AF187813 NM_003960	-32666	-	TSC_hg19_v1_chr2_+_73613119 AJ417593 AX751581 NM_015120	-289122	+	AB463596 BC136252 BC143379 X60104 BC034462 TSC_hg19_v1_chr2_-_73520677 NM_001965 AK314154	-381540	-	AF185571 BC069564 BC121101 BC121102 NM_016347	26286	-	TSC_hg19_v1_chr2_-_73964473 AK291071 AF060921 AK097254 AY643713 BC029492 AK295239 AF151879 NM_016058	62291	-	CU674166 DQ891356 DQ894537 TSC_hg19_v1_chr2_-_74007231 BC000346 AF023917 AK315271 CR627368 NM_003584	105013	-	AB019551|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##BC012626|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##AF187813|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##NM_003960|NAT8|9027|N-acetyltransferase 8 (GCN5-related, putative)##AJ417593|ALMS1|7840|Alstrom syndrome 1##AX751581|ALMS1|7840|Alstrom syndrome 1##NM_015120|ALMS1|7840|Alstrom syndrome 1##BC136252|EGR4|1961|early growth response 4##BC143379|EGR4|1961|early growth response 4##X60104|EGR4|1961|early growth response 4##BC034462|EGR4|1961|early growth response 4##NM_001965|EGR4|1961|early growth response 4##AK314154|EGR4|1961|early growth response 4##AF185571|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##BC069564|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##BC121101|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##BC121102|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##NM_016347|NAT8B|51471|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)##AK291071|TPRKB|51002|TP53RK binding protein##AF060921|TPRKB|51002|TP53RK binding protein##AK097254|TPRKB|51002|TP53RK binding protein##AY643713|TPRKB|51002|TP53RK binding protein##BC029492|TPRKB|51002|TP53RK binding protein##AK295239|TPRKB|51002|TP53RK binding protein##AF151879|TPRKB|51002|TP53RK binding protein##NM_016058|TPRKB|51002|TP53RK binding protein##DQ891356|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)##DQ894537|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)##BC000346|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)##AF023917|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)##AK315271|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)##CR627368|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)##NM_003584|DUSP11|8446|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	0.0	0.0	
chr18	39516987	39517102	reg1006747.p1	5.974	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2136776	-	TSC_hg19_v1_chr18_-_36915657 D28405	-2601388	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-4371045	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	18155	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	18189	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1178525	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.998685	0.0	denovo_WM_7:60:0.528	denovo_WM_7:61:0.471
chr10	121464058	121464237	reg1000582.p2	5.973	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-53011	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-53072	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-53094	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	21391	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	21467	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	21558	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.0	0.0	
chr15	23031506	23031625	reg1006650.p1	5.973	+	AK127094 AY763579 NM_001033028	-75811	+	TSC_hg19_v1_chr15_+_22892723 D38549 BC005097	-138828	+	TSC_hg19_v1_chr15_+_22892718 AY763578	-138849	+	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	2769	-	TSC_hg19_v1_chr15_-_23034365 AK300843	2802	-	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	2851	-	AK127094|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AY763579|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##NM_001033028|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##D38549|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##BC005097|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AY763578|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2	0.840827	0.0	denovo_WM_7:-14:0.831
chr19	633873	634053	reg1007589.p2	5.973	+	TSC_hg19_v1_chr19_-_633564 BC070057 NM_005035	-363	-	TSC_hg19_v1_chr19_-_633538 AK225723 AK225865 BC098387 U75370	-420	-	TSC_hg19_v1_chr19_-_633520 AK307525 BC030829	-465	-	BC041334 BC137444 BC137445 BC144645 AY359084 AB021925 NM_020637	5938	+	BC025374 TSC_hg19_v1_chr19_-_663155	29193	-	TSC_hg19_v1_chr19_-_663185 AK000559	29212	-	BC070057|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##NM_005035|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##AK225723|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##AK225865|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##BC098387|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##U75370|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##AK307525|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##BC030829|POLRMT|5442|polymerase (RNA) mitochondrial (DNA directed)##BC137444|FGF22|27006|fibroblast growth factor 22##BC137445|FGF22|27006|fibroblast growth factor 22##AY359084|FGF22|27006|fibroblast growth factor 22##AB021925|FGF22|27006|fibroblast growth factor 22##NM_020637|FGF22|27006|fibroblast growth factor 22##BC025374|RNF126|55658|ring finger protein 126##AK000559|RNF126|55658|ring finger protein 126	0.998901	0.0	denovo_WM_7:7:0.307	denovo_WM_7:8:0.307	denovo_WM_7:9:0.307
chr3	143696968	143697100	reg1007537.p1	5.973	+	NM_001134470 AK294020	-4817	+	TSC_hg19_v1_chr3_+_143690915 BC037293	-6044	+	NM_173552 AK315082	-6382	+	AB527423 U84573 AK295084 TSC_hg19_v1_chr3_-_145878818	2181773	-	TSC_hg19_v1_chr3_-_145878972 BC037169 AB209879	2181922	-	TSC_hg19_v1_chr3_-_145879223 NM_000935 NM_182943	2182217	-	NM_001134470|C3orf58|205428|chromosome 3 open reading frame 58##AK294020|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##U84573|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##AK295084|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##BC037169|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##AB209879|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##NM_000935|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2##NM_182943|PLOD2|5352|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	0.242019	0.0	
chr16	30461225	30461353	reg1007888.p1	5.972	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-4060	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-4107	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-19950	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	22711	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	22783	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	22844	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.130484	0.888945	CTCF.p2:-24:0.889
chr1	236324173	236324305	reg1005758.p2	5.971	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-18363	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-95499	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-95741	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	120949	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	121077	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	233444	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	1.241475	0.0	denovo_WM_7:-19:0.934	denovo_WM_7:-37:0.203
chr4	2920536	2920621	reg1004552.p1	5.971	+	AK025413 TSC_hg19_v1_chr4_+_2883766	-36877	+	TSC_hg19_v1_chr4_+_2845627 AH004561 S70310 BC013393 AK309186	-74912	+	TSC_hg19_v1_chr4_+_2845589 NM_001119 NM_014189 NM_014190 NM_176801	-74999	+	CU677155 EU176393 EU176739 L11669 TSC_hg19_v1_chr4_-_2935840	15169	-	TSC_hg19_v1_chr4_-_2935854 NM_001120	15329	-	TSC_hg19_v1_chr4_-_2936515 BC001502 BC014979	15909	-	AK025413|ADD1|118|adducin 1 (alpha)##S70310|ADD1|118|adducin 1 (alpha)##BC013393|ADD1|118|adducin 1 (alpha)##AK309186|ADD1|118|adducin 1 (alpha)##NM_001119|ADD1|118|adducin 1 (alpha)##NM_014189|ADD1|118|adducin 1 (alpha)##NM_014190|ADD1|118|adducin 1 (alpha)##NM_176801|ADD1|118|adducin 1 (alpha)##EU176393|MFSD10|10227|major facilitator superfamily domain containing 10##EU176739|MFSD10|10227|major facilitator superfamily domain containing 10##L11669|MFSD10|10227|major facilitator superfamily domain containing 10##NM_001120|MFSD10|10227|major facilitator superfamily domain containing 10##BC001502|MFSD10|10227|major facilitator superfamily domain containing 10##BC014979|MFSD10|10227|major facilitator superfamily domain containing 10	0.984632	0.0	denovo_WM_7:7:0.750
chr4	99429583	99429702	reg1005922.p1	5.971	+	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-247048	+	CU691442 BC036870 NM_174952	-365297	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	-2668384	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	150117	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	420618	-	M15353 TSC_hg19_v1_chr4_-_99850288	420649	-	NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E	0.98372	0.0	
chr10	79805149	79805304	reg1007581.p1	5.970	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	-11595	+	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	-11670	+	TSC_hg19_v1_chr10_-_79789304 NM_007055	-15912	-	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	1023562	+	TSC_hg19_v1_chr10_+_80899458 AK025812	1094258	+	TSC_hg19_v1_chr10_+_81003207 AB033050	1197904	+	AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##NM_007055|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK025812|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AB033050|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.977026	0.0	denovo_WM_7:18:0.823
chr12	32674305	32674442	reg1006004.p1	5.970	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	-19334	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	-414200	+	TSC_hg19_v1_chr12_+_32259750 BC010091	-414659	+	TSC_hg19_v1_chr12_+_32687260 AK303334	12890	+	TSC_hg19_v1_chr12_+_32832187 AK302565 NM_005690 NM_012062 NM_012063 AK311606	157784	+	TSC_hg19_v1_chr12_+_32832234 AK299926 AF000430 AK291094 AK293290 AK294533 AK298568 BC107763 AB209070 AB006965 BC024590	157864	+	BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK303334|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK302565|DNM1L|10059|dynamin 1-like##NM_005690|DNM1L|10059|dynamin 1-like##NM_012062|DNM1L|10059|dynamin 1-like##NM_012063|DNM1L|10059|dynamin 1-like##AK311606|DNM1L|10059|dynamin 1-like##AK299926|DNM1L|10059|dynamin 1-like##AF000430|DNM1L|10059|dynamin 1-like##AK291094|DNM1L|10059|dynamin 1-like##AK293290|DNM1L|10059|dynamin 1-like##AK294533|DNM1L|10059|dynamin 1-like##AK298568|DNM1L|10059|dynamin 1-like##BC107763|DNM1L|10059|dynamin 1-like##AB209070|DNM1L|10059|dynamin 1-like##AB006965|DNM1L|10059|dynamin 1-like##BC024590|DNM1L|10059|dynamin 1-like	0.997713	0.0	denovo_WM_7:-56:0.238	denovo_WM_7:-57:0.238	denovo_WM_7:-58:0.238	denovo_WM_7:-59:0.238
chr1	26642096	26642198	reg1007946.p1	5.970	+	AY007163 TSC_hg19_v1_chr1_-_26633128 AF521018 AK291503 AF520989 AF521017 AK090792 AX746618 AK293910 CR749413 AK094198 AK296179 BX647774 BX648412 BC038106 AK093258 AX748018 NM_001077262 NM_183008	-8995	-	TSC_hg19_v1_chr1_+_26606633 DQ893377 DQ896698	-35516	+	TSC_hg19_v1_chr1_+_26606589 AK024884 AF304163	-35549	+	TSC_hg19_v1_chr1_+_26644396 NM_001803 AK311554	2253	+	TSC_hg19_v1_chr1_+_26644458 BC000644 X62466 X67699 BT007116 CR456874	2336	+	NM_145345 AK097368	2657	-	AY007163|UBXN11|91544|UBX domain protein 11##AF521018|UBXN11|91544|UBX domain protein 11##AK291503|UBXN11|91544|UBX domain protein 11##AF520989|UBXN11|91544|UBX domain protein 11##AF521017|UBXN11|91544|UBX domain protein 11##AK090792|UBXN11|91544|UBX domain protein 11##AK293910|UBXN11|91544|UBX domain protein 11##CR749413|UBXN11|91544|UBX domain protein 11##AK094198|UBXN11|91544|UBX domain protein 11##AK296179|UBXN11|91544|UBX domain protein 11##BX647774|UBXN11|91544|UBX domain protein 11##BX648412|UBXN11|91544|UBX domain protein 11##BC038106|UBXN11|91544|UBX domain protein 11##AK093258|UBXN11|91544|UBX domain protein 11##NM_001077262|UBXN11|91544|UBX domain protein 11##NM_183008|UBXN11|91544|UBX domain protein 11##DQ893377|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##DQ896698|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##AK024884|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##AF304163|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##NM_001803|CD52|1043|CD52 molecule##BC000644|CD52|1043|CD52 molecule##X62466|CD52|1043|CD52 molecule##X67699|CD52|1043|CD52 molecule##BT007116|CD52|1043|CD52 molecule##CR456874|CD52|1043|CD52 molecule##NM_145345|UBXN11|91544|UBX domain protein 11##AK097368|UBXN11|91544|UBX domain protein 11	0.0	0.0	
chr2	213551138	213551266	reg1009708.p1	5.970	+	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	-147887	-	AK316425 NM_001122634 AK302778 AY317138	-2093117	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	-2129813	+	AK301503 AF130863 NM_016260	463853	-	BC028936 NM_001079526	465130	-	AK124960 NM_001242575	597726	-	BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK316425|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122634|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK302778|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AY317138|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451	0.0	0.785177	CTCF.p2:6:0.785
chr5	92413935	92414090	reg1007804.p1	5.970	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	-1734880	-	TSC_hg19_v1_chr5_+_90676181 BC043415	-1737850	+	AK091866 TSC_hg19_v1_chr5_-_90610220	-1803767	-	AK311143 BC042879 TSC_hg19_v1_chr5_-_92916977 BC010610 BC018089 AK095719	502951	-	TSC_hg19_v1_chr5_+_92918927 BC017493 NM_005654	504971	+	TSC_hg19_v1_chr5_+_92920609 BC004154 AB463944 HQ709180 HQ709181 HQ709182 HQ709183 X16155	506656	+	BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##AK311143|FLJ42709|441094|uncharacterized LOC441094##BC042879|FLJ42709|441094|uncharacterized LOC441094##BC010610|FLJ42709|441094|uncharacterized LOC441094##BC018089|FLJ42709|441094|uncharacterized LOC441094##AK095719|FLJ42709|441094|uncharacterized LOC441094##BC017493|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##NM_005654|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##BC004154|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709180|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709181|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##HQ709182|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##HQ709183|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1##X16155|NR2F1|7025|nuclear receptor subfamily 2, group F, member 1	0.0	0.0	
chr12	104357796	104357940	reg1009230.p1	5.968	+	TSC_hg19_v1_chr12_-_104350994 BC039467 BC073939 AK024037 BC063467 NM_001135570	-6923	-	TSC_hg19_v1_chr12_+_104324215 AB209534 BC009195	-33647	+	TSC_hg19_v1_chr12_+_104324199 BC066656	-33669	+	BC044618 TSC_hg19_v1_chr12_-_104359508	1623	-	TSC_hg19_v1_chr12_+_104359670 NM_003211 AK311673 AK303631 AK309792 BC010945 BC019925 BC037557 AK313234 BC071714 AK299832 BC104477 AB590808	1818	+	AY358763 AK027310 TSC_hg19_v1_chr12_-_104443809	85886	-	BC039467|C12orf73|728568|chromosome 12 open reading frame 73##BC073939|C12orf73|728568|chromosome 12 open reading frame 73##AK024037|C12orf73|728568|chromosome 12 open reading frame 73##BC063467|C12orf73|728568|chromosome 12 open reading frame 73##NM_001135570|C12orf73|728568|chromosome 12 open reading frame 73##AB209534|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC009195|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC066656|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC044618|C12orf73|728568|chromosome 12 open reading frame 73##NM_003211|TDG|6996|thymine-DNA glycosylase##AK311673|TDG|6996|thymine-DNA glycosylase##AK303631|TDG|6996|thymine-DNA glycosylase##AK309792|TDG|6996|thymine-DNA glycosylase##BC010945|TDG|6996|thymine-DNA glycosylase##BC019925|TDG|6996|thymine-DNA glycosylase##BC037557|TDG|6996|thymine-DNA glycosylase##AK313234|TDG|6996|thymine-DNA glycosylase##BC071714|TDG|6996|thymine-DNA glycosylase##AK299832|TDG|6996|thymine-DNA glycosylase##BC104477|TDG|6996|thymine-DNA glycosylase##AY358763|GLT8D2|83468|glycosyltransferase 8 domain containing 2##AK027310|GLT8D2|83468|glycosyltransferase 8 domain containing 2	1.996014	0.0	
chr15	101462520	101462616	reg1004263.p1	5.968	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-3056	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-3094	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-42497	+	AB071402 TSC_hg19_v1_chr15_-_101791795	329168	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	329567	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	355095	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.987241	0.0	
chr7	156447702	156447829	reg1007632.p1	5.968	+	NM_001184997 AF325690	-12070	+	NM_030936 TSC_hg19_v1_chr7_+_156433487 AK314067 NM_001184996 AL136874 BC028120 AK307316	-14300	+	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	-14534	-	TSC_hg19_v1_chr7_-_156468370 CU688401	20657	-	TSC_hg19_v1_chr7_-_156685868 AL834394 AB463099 AM392621 AM393143 AM393254 AM393828 CU676016 AF402318 BC017663 BC063649 AF107454 AK021727 AK291037 AK299753	237982	-	TSC_hg19_v1_chr7_-_156685878 NM_022458	238151	-	NM_001184997|RNF32|140545|ring finger protein 32##AF325690|RNF32|140545|ring finger protein 32##NM_030936|RNF32|140545|ring finger protein 32##AK314067|RNF32|140545|ring finger protein 32##NM_001184996|RNF32|140545|ring finger protein 32##AL136874|RNF32|140545|ring finger protein 32##BC028120|RNF32|140545|ring finger protein 32##AK307316|RNF32|140545|ring finger protein 32##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13##AL834394|LMBR1|64327|limb region 1 homolog (mouse)##AM392621|LMBR1|64327|limb region 1 homolog (mouse)##AM393143|LMBR1|64327|limb region 1 homolog (mouse)##AM393254|LMBR1|64327|limb region 1 homolog (mouse)##AM393828|LMBR1|64327|limb region 1 homolog (mouse)##AF402318|LMBR1|64327|limb region 1 homolog (mouse)##BC017663|LMBR1|64327|limb region 1 homolog (mouse)##BC063649|LMBR1|64327|limb region 1 homolog (mouse)##AK021727|LMBR1|64327|limb region 1 homolog (mouse)##AK291037|LMBR1|64327|limb region 1 homolog (mouse)##AK299753|LMBR1|64327|limb region 1 homolog (mouse)##NM_022458|LMBR1|64327|limb region 1 homolog (mouse)	0.989151	0.0	denovo_WM_7:21:0.989
chr8	110574033	110574147	reg1005309.p1	5.967	+	NM_004215 BC005249 BC022506 AK308950 AB007619 AF006265 AY515724	-21680	+	TSC_hg19_v1_chr8_+_110551942 NM_198120 AK290651 BC017729	-22105	+	AY219181 NM_177531 BC093096 AK128617	-199361	+	AK297182 TSC_hg19_v1_chr8_-_110620232	46136	-	NM_001099756	81328	-	AY705385 AB384607 TSC_hg19_v1_chr8_-_110656972	82839	-	NM_004215|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC005249|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC022506|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK308950|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AB007619|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AF006265|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY515724|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##NM_198120|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK290651|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC017729|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY219181|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_177531|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##BC093096|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##AK297182|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099756|SYBU|55638|syntabulin (syntaxin-interacting)##AY705385|SYBU|55638|syntabulin (syntaxin-interacting)	1.631404	0.797297	denovo_WM_7:3:0.475	CTCF.p2:-41:0.797
chr9	97254582	97254684	reg1005977.p1	5.967	+	TSC_hg19_v1_chr9_+_97136850 NM_032558	-117800	+	HQ258506 BC130390 BC143798 NM_017561	-163719	-	TSC_hg19_v1_chr9_+_97021599 NM_194320 AK289742 AK093956	-233043	+	CR536483 HQ258389 BC113632 BC117477 NM_003837 Y10812	101407	-	AF073475 CU680450 D26054 D26055 D26056 AY544122 TSC_hg19_v1_chr9_-_97401681	147003	-	TSC_hg19_v1_chr9_-_97401794 BC012927 M19922	147153	-	NM_032558|HIATL1|84641|hippocampus abundant transcript-like 1##HQ258506|FAM22F|54754|family with sequence similarity 22, member F##BC130390|FAM22F|54754|family with sequence similarity 22, member F##BC143798|FAM22F|54754|family with sequence similarity 22, member F##NM_017561|FAM22F|54754|family with sequence similarity 22, member F##NM_194320|ZNF169|169841|zinc finger protein 169##AK289742|ZNF169|169841|zinc finger protein 169##AK093956|ZNF169|169841|zinc finger protein 169##CR536483|FBP2|8789|fructose-1,6-bisphosphatase 2##HQ258389|FBP2|8789|fructose-1,6-bisphosphatase 2##BC113632|FBP2|8789|fructose-1,6-bisphosphatase 2##BC117477|FBP2|8789|fructose-1,6-bisphosphatase 2##NM_003837|FBP2|8789|fructose-1,6-bisphosphatase 2##Y10812|FBP2|8789|fructose-1,6-bisphosphatase 2##AF073475|FBP1|2203|fructose-1,6-bisphosphatase 1##D26054|FBP1|2203|fructose-1,6-bisphosphatase 1##D26055|FBP1|2203|fructose-1,6-bisphosphatase 1##D26056|FBP1|2203|fructose-1,6-bisphosphatase 1##AY544122|FBP1|2203|fructose-1,6-bisphosphatase 1##BC012927|FBP1|2203|fructose-1,6-bisphosphatase 1##M19922|FBP1|2203|fructose-1,6-bisphosphatase 1	0.98577	0.0	denovo_WM_7:28:0.477
chrX	77181361	77181507	reg1007319.p2	5.967	+	AB117973 TSC_hg19_v1_chrX_+_77166237 AK096667 AB208828	-15192	+	TSC_hg19_v1_chrX_+_77166193 AK310748 NM_000052 L06133	-15241	+	TSC_hg19_v1_chrX_+_77154964 NM_001866 Z14244 BC018386 AK311879 DQ890544 EU176472 BT009767 CR450332 CR542124	-26431	+	NM_001029891 AB528771	43702	-	NM_000291 TSC_hg19_v1_chrX_+_77359707	178253	+	TSC_hg19_v1_chrX_+_77359742 AK301632 AK303848 AK291081 AK295014 AK295182 AK298855 AK310756 AK312280 BC103752 D28371	178297	+	AB117973|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##AB208828|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##NM_000052|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##L06133|ATP7A|538|ATPase, Cu++ transporting, alpha polypeptide##NM_001866|COX7B|1349|cytochrome c oxidase subunit VIIb##Z14244|COX7B|1349|cytochrome c oxidase subunit VIIb##BC018386|COX7B|1349|cytochrome c oxidase subunit VIIb##AK311879|COX7B|1349|cytochrome c oxidase subunit VIIb##DQ890544|COX7B|1349|cytochrome c oxidase subunit VIIb##EU176472|COX7B|1349|cytochrome c oxidase subunit VIIb##BT009767|COX7B|1349|cytochrome c oxidase subunit VIIb##CR450332|COX7B|1349|cytochrome c oxidase subunit VIIb##CR542124|COX7B|1349|cytochrome c oxidase subunit VIIb##NM_001029891|PGAM4|441531|phosphoglycerate mutase family member 4##NM_000291|PGK1|5230|phosphoglycerate kinase 1##AK301632|PGK1|5230|phosphoglycerate kinase 1##AK303848|PGK1|5230|phosphoglycerate kinase 1##AK291081|PGK1|5230|phosphoglycerate kinase 1##AK295014|PGK1|5230|phosphoglycerate kinase 1##AK295182|PGK1|5230|phosphoglycerate kinase 1##AK298855|PGK1|5230|phosphoglycerate kinase 1##AK310756|PGK1|5230|phosphoglycerate kinase 1##AK312280|PGK1|5230|phosphoglycerate kinase 1##BC103752|PGK1|5230|phosphoglycerate kinase 1##D28371|PGK1|5230|phosphoglycerate kinase 1	0.999509	0.0	denovo_WM_7:-11:0.975
chrX	9696436	9696582	reg1005912.p1	5.967	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	-263275	+	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	-265162	+	BC120955 BC120956 NM_205849	-695407	-	Z48804 BC015657 BC068977 NM_000273	37451	-	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	57971	+	BC140866 TSC_hg19_v1_chrX_+_9754543	58034	+	Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##BC140866|SHROOM2|357|shroom family member 2	0.997385	0.0	denovo_WM_7:-61:0.753
chr12	123218297	123218453	reg1006929.p1	5.966	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	-3370	-	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-16997	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-30503	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	19016	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	40726	+	TSC_hg19_v1_chr12_+_123319294 AK090537	100927	+	BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62##AK090537|HIP1R|9026|huntingtin interacting protein 1 related	0.995108	0.0	denovo_WM_7:10:0.681	denovo_WM_7:12:0.217
chr3	19581576	19581695	reg1004536.p1	5.965	+	AK295633 AY053503 NM_144633 AB209053 AK309034	-391631	+	BC001744 NM_001131010	-1101402	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	-1114838	-	BC028198 AK097644 NM_144715	394053	-	TSC_hg19_v1_chr3_+_19988586 NM_004162	407054	+	TSC_hg19_v1_chr3_+_19988870 AK312618 BC018288 AK309287 AK295992 BC001267	407266	+	AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC028198|EFHB|151651|EF-hand domain family, member B##AK097644|EFHB|151651|EF-hand domain family, member B##NM_144715|EFHB|151651|EF-hand domain family, member B##NM_004162|RAB5A|5868|RAB5A, member RAS oncogene family##AK312618|RAB5A|5868|RAB5A, member RAS oncogene family##BC018288|RAB5A|5868|RAB5A, member RAS oncogene family##AK309287|RAB5A|5868|RAB5A, member RAS oncogene family##AK295992|RAB5A|5868|RAB5A, member RAS oncogene family##BC001267|RAB5A|5868|RAB5A, member RAS oncogene family	0.092806	0.0	
chr3	32470682	32470844	reg1007223.p2	5.965	+	TSC_hg19_v1_chr3_+_32433370 BC010116 AY174113 DQ132881 AK308878	-37360	+	TSC_hg19_v1_chr3_+_32433162 AF479263 NM_138410 NM_181472 AL832450	-37594	+	TSC_hg19_v1_chr3_+_32280215 BC041390	-190544	+	CR457231 TSC_hg19_v1_chr3_-_32544290	73509	-	TSC_hg19_v1_chr3_-_32544335 AK000403	73570	-	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	73617	-	BC010116|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AY174113|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##DQ132881|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AK308878|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AF479263|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_138410|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_181472|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AL832450|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##BC041390|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6	0.994995	0.0	denovo_WM_7:33:0.973
chr5	139409279	139409393	reg1006105.p2	5.965	+	TSC_hg19_v1_chr5_+_139175392 AL136559 NM_032289 BC038233	-233930	+	TSC_hg19_v1_chr5_+_139060403 DQ892589 DQ895807	-348944	+	AF151029 TSC_hg19_v1_chr5_+_139060229	-349124	+	BC103983 BC103984 BC114333 BC114334 TSC_hg19_v1_chr5_-_139422732	13392	-	U92987 TSC_hg19_v1_chr5_-_139422858 AB005060 AK124504 NM_001184935 NM_004883 NM_013981 NM_013982 NM_013983	13509	-	TSC_hg19_v1_chr5_+_139493703 M96684 NM_005859 BC110574 BC110594 BC036087 AB464679 BT019388	84391	+	AL136559|PSD2|84249|pleckstrin and Sec7 domain containing 2##NM_032289|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC038233|PSD2|84249|pleckstrin and Sec7 domain containing 2##DQ892589|CXXC5|51523|CXXC finger protein 5##DQ895807|CXXC5|51523|CXXC finger protein 5##AF151029|CXXC5|51523|CXXC finger protein 5##BC103983|NRG2|9542|neuregulin 2##BC103984|NRG2|9542|neuregulin 2##BC114333|NRG2|9542|neuregulin 2##BC114334|NRG2|9542|neuregulin 2##U92987|NRG2|9542|neuregulin 2##AB005060|NRG2|9542|neuregulin 2##AK124504|NRG2|9542|neuregulin 2##NM_001184935|NRG2|9542|neuregulin 2##NM_004883|NRG2|9542|neuregulin 2##NM_013981|NRG2|9542|neuregulin 2##NM_013982|NRG2|9542|neuregulin 2##NM_013983|NRG2|9542|neuregulin 2##M96684|PURA|5813|purine-rich element binding protein A##NM_005859|PURA|5813|purine-rich element binding protein A##BC110574|PURA|5813|purine-rich element binding protein A##BC110594|PURA|5813|purine-rich element binding protein A##BC036087|PURA|5813|purine-rich element binding protein A##BT019388|PURA|5813|purine-rich element binding protein A	0.998499	0.0	denovo_WM_7:-54:0.457	denovo_WM_7:-55:0.457
chr6	24274854	24274952	reg1005737.p2	5.965	+	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	-148473	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	-1705178	+	X54394 X54393 GQ305133 M58594 NM_001163558	-1971856	-	AF181722 NM_181337	82227	+	AF181721 NM_016356	83376	-	BC050704 NM_001195610	108616	-	AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1##AF181721|DCDC2|51473|doublecortin domain containing 2##NM_016356|DCDC2|51473|doublecortin domain containing 2##BC050704|DCDC2|51473|doublecortin domain containing 2##NM_001195610|DCDC2|51473|doublecortin domain containing 2	2.046965	0.06817	denovo_WM_7:-31:0.321	denovo_WM_7:-44:0.363
chrX	118740376	118740515	reg1008151.p2	5.965	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-617	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-13463	-	BC042021 NM_181777	-26148	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	86640	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	86687	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	86734	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.0	0.0	
chr21	32704963	32705143	reg1007078.p2	5.964	+	AB096964 NM_001099219	-294259	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-451195	-	AJ457063 AB096962 NM_181606	-503065	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	226305	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	326954	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	369065	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.995988	0.0	denovo_WM_7:62:0.561	denovo_WM_7:64:0.214
chrX	24100044	24100201	reg1002498.p2	5.964	+	TSC_hg19_v1_chrX_+_24073072 AK222577 AK290397 AK312247 AB590041 CU676476 DQ891794 DQ894977 AB451230 AB451353 L19161	-27044	+	TSC_hg19_v1_chrX_+_24073062 BC019906 NM_001415	-27058	+	AK057298 NM_030624	-54820	-	AB209892 NM_001178086 NM_001178095 X59738 TSC_hg19_v1_chrX_+_24167845 NM_001178084 NM_001178085 NM_003410	67670	+	X59739 X59740 TSC_hg19_v1_chrX_+_24167864	67750	+	NM_001136233	231309	-	AK222577|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK290397|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK312247|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ891794|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ894977|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451230|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451353|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##L19161|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##BC019906|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##NM_001415|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK057298|KLHL15|80311|kelch-like 15 (Drosophila)##NM_030624|KLHL15|80311|kelch-like 15 (Drosophila)##AB209892|ZFX|7543|zinc finger protein, X-linked##NM_001178086|ZFX|7543|zinc finger protein, X-linked##NM_001178095|ZFX|7543|zinc finger protein, X-linked##X59738|ZFX|7543|zinc finger protein, X-linked##NM_001178084|ZFX|7543|zinc finger protein, X-linked##NM_001178085|ZFX|7543|zinc finger protein, X-linked##NM_003410|ZFX|7543|zinc finger protein, X-linked##X59739|ZFX|7543|zinc finger protein, X-linked##X59740|ZFX|7543|zinc finger protein, X-linked##NM_001136233|FAM48B2|170067|family with sequence similarity 48, member B2	1.180617	0.0	denovo_WM_7:-58:0.841
chr22	17090183	17090285	reg1007664.p2	5.963	+	CU689750 BC139842 BC139926 CU013107 CU013395 DQ892082 DQ895275 GQ129410 GQ129411 AB462978 CR456508 BC100811 BC100812 BC100813 BC022006 BC033797 NM_014406	-16665	-	NM_001005239	-640431	-	BC127623 AY465171 AY465172 AY466021 NM_001136213	-802308	-	BC137521 BC137522 BC144679 AY989815 AK098608 AY534240 BC045548 NM_175878	212335	-	AB076978 NM_001037814	398877	-	TSC_hg19_v1_chr22_+_17565850 NM_014339	475617	+	BC139842|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC139926|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##DQ892082|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##DQ895275|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##GQ129410|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##GQ129411|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##CR456508|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100811|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100812|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC100813|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC022006|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##BC033797|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##NM_014406|CCT8L2|150160|chaperonin containing TCP1, subunit 8 (theta)-like 2##NM_001005239|OR11H1|81061|olfactory receptor, family 11, subfamily H, member 1##BC127623|POTEG|404785|POTE ankyrin domain family, member G##AY465171|POTEG|404785|POTE ankyrin domain family, member G##AY465172|POTEG|404785|POTE ankyrin domain family, member G##AY466021|POTEH|23784|POTE ankyrin domain family, member H##NM_001136213|POTEH|23784|POTE ankyrin domain family, member H##BC137521|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC137522|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC144679|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AY989815|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AK098608|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AY534240|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##BC045548|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##NM_175878|XKR3|150165|XK, Kell blood group complex subunit-related family, member 3##AB076978|GAB4|128954|GRB2-associated binding protein family, member 4##NM_001037814|GAB4|128954|GRB2-associated binding protein family, member 4##NM_014339|IL17RA|23765|interleukin 17 receptor A	0.951166	0.0	denovo_WM_7:-60:0.339	denovo_WM_7:-63:0.230
chr3	9794070	9794250	reg1006315.p1	5.963	+	TSC_hg19_v1_chr3_+_9791972 AF003595 U96710 AB384844 DQ896107 EU176392	-2218	+	TSC_hg19_v1_chr3_+_9791635 NM_002542 NM_016819 NM_016820 NM_016821 NM_016826 NM_016827 NM_016828 NM_016829 U88527 U88620 Y11731 Y11838 Y13277 BC000657 AK289858 AB000410 AF026691	-2461	+	TSC_hg19_v1_chr3_+_9773769 M91585	-20374	+	TSC_hg19_v1_chr3_-_9811611 AK314917	17442	-	TSC_hg19_v1_chr3_-_9811623 L41816	17464	-	BC106754 BC106755 TSC_hg19_v1_chr3_-_9811662 NM_003656	17493	-	AF003595|OGG1|4968|8-oxoguanine DNA glycosylase##U96710|OGG1|4968|8-oxoguanine DNA glycosylase##DQ896107|OGG1|4968|8-oxoguanine DNA glycosylase##EU176392|OGG1|4968|8-oxoguanine DNA glycosylase##NM_002542|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016819|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016820|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016821|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016826|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016827|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016828|OGG1|4968|8-oxoguanine DNA glycosylase##NM_016829|OGG1|4968|8-oxoguanine DNA glycosylase##U88527|OGG1|4968|8-oxoguanine DNA glycosylase##U88620|OGG1|4968|8-oxoguanine DNA glycosylase##Y11731|OGG1|4968|8-oxoguanine DNA glycosylase##Y11838|OGG1|4968|8-oxoguanine DNA glycosylase##Y13277|OGG1|4968|8-oxoguanine DNA glycosylase##BC000657|OGG1|4968|8-oxoguanine DNA glycosylase##AK289858|OGG1|4968|8-oxoguanine DNA glycosylase##AB000410|OGG1|4968|8-oxoguanine DNA glycosylase##AF026691|OGG1|4968|8-oxoguanine DNA glycosylase##M91585|BRPF1|7862|bromodomain and PHD finger containing, 1##AK314917|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##L41816|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##BC106754|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##BC106755|CAMK1|8536|calcium/calmodulin-dependent protein kinase I##NM_003656|CAMK1|8536|calcium/calmodulin-dependent protein kinase I	0.997228	0.0	
chr6	42198093	42198253	reg1006662.p1	5.963	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-12556	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-12573	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-12576	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	221650	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	333577	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	333604	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.077383	0.471235	CTCF.p2:17:0.471
chr1	21291468	21291612	reg1007521.p1	5.962	+	AK304065 TSC_hg19_v1_chr1_-_21113801	-177721	-	TSC_hg19_v1_chr1_-_21113791 BC046170	-177763	-	TSC_hg19_v1_chr1_-_21113163 AK023129 NM_016287	-178368	-	TSC_hg19_v1_chr1_-_21377387 BC094683	85850	-	BC136643 BC144335 TSC_hg19_v1_chr1_-_21377462 AK225489	85926	-	TSC_hg19_v1_chr1_-_21415672 AK302087	124146	-	AK304065|HP1BP3|50809|heterochromatin protein 1, binding protein 3##BC046170|HP1BP3|50809|heterochromatin protein 1, binding protein 3##AK023129|HP1BP3|50809|heterochromatin protein 1, binding protein 3##NM_016287|HP1BP3|50809|heterochromatin protein 1, binding protein 3##BC094683|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC136643|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC144335|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK225489|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK302087|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3	0.0	0.114931	
chr22	47122956	47123136	reg1006923.p1	5.962	+	CR456470 NM_015124 BC129837 AB463563 CU013020 CU013308	-100370	+	AF231024 NM_014246 TSC_hg19_v1_chr22_-_46933142	-189932	-	TSC_hg19_v1_chr22_+_46731810 AK303020	-391236	+	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	11033	-	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	11109	-	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	35554	+	CR456470|GRAMD4|23151|GRAM domain containing 4##NM_015124|GRAMD4|23151|GRAM domain containing 4##BC129837|GRAMD4|23151|GRAM domain containing 4##AF231024|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##NM_014246|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##AK303020|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A	0.295333	0.0	denovo_WM_7:-95:0.295
chr9	132789406	132789586	reg1004302.p2	5.962	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-191731	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-191774	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-191812	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	15858	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	15992	-	BC039728 NM_001136557 NM_001136558 NM_020960	26488	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.0	0.0	
chr14	99736153	99736333	reg1006735.p1	5.961	+	AK098639 NM_182560	-558294	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-2472528	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-2767459	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1374	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1647	-	BC120967 BC120968 BC127624 BC127625 TSC_hg19_v1_chr14_-_99947104	210851	-	AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##BC120967|SETD3|84193|SET domain containing 3##BC120968|SETD3|84193|SET domain containing 3##BC127624|SETD3|84193|SET domain containing 3##BC127625|SETD3|84193|SET domain containing 3	1.981981	0.0	denovo_WM_7:-2:0.262	denovo_WM_7:-3:0.219	denovo_WM_7:-21:0.220	denovo_WM_7:-22:0.263
chr1	56799158	56799289	reg1008865.p3	5.961	+	TSC_hg19_v1_chr1_+_55681088 BC040313	-1118139	+	TSC_hg19_v1_chr1_-_55681045 NM_015306	-1118187	-	TSC_hg19_v1_chr1_+_55505220 AK075365	-1293999	+	AF043329 TSC_hg19_v1_chr1_-_57045054 BC009196	245796	-	AF017786 U79294 AF480883 TSC_hg19_v1_chr1_-_57045132	245907	-	AK312439 TSC_hg19_v1_chr1_-_57045216	245994	-	BC040313|LOC100507634|100507634|uncharacterized LOC100507634##NM_015306|USP24|23358|ubiquitin specific peptidase 24##AK075365|PCSK9|255738|proprotein convertase subtilisin/kexin type 9##AF043329|PPAP2B|8613|phosphatidic acid phosphatase type 2B##BC009196|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF017786|PPAP2B|8613|phosphatidic acid phosphatase type 2B##U79294|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF480883|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK312439|PPAP2B|8613|phosphatidic acid phosphatase type 2B	1.668627	0.0	denovo_WM_7:0:0.563	denovo_WM_7:15:0.585
chr19	10212996	10213162	reg1000824.p4	5.961	+	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-16017	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-16082	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	-16293	+	AY358276 BC142632 AB054064 NM_031917 AF230330	321	-	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	3910	+	NM_002566 BC073827	9125	+	AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66##AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11	0.0	0.0	
chr19	14480642	14480822	reg1000566.p1	5.961	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-163684	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-219932	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-232741	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	11317	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	11523	+	TSC_hg19_v1_chr19_-_14529877 AK301847	49157	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.0	0.0	
chr20	46133900	46134076	reg1001577.p4	5.961	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-3304	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-3366	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-148500	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	280764	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	281330	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1310298	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	0.0	0.0	
chr2	63799822	63799951	reg1006597.p2	5.961	+	NM_014562 TSC_hg19_v1_chr2_+_63277964 AK095680 AK297308 BC007621	-521921	+	NM_001199770	-522695	+	BC029477 NM_001142614	-865856	+	TSC_hg19_v1_chr2_-_63815560 AK310290	15654	-	TSC_hg19_v1_chr2_-_63815583 BX538331 AK055030 AL833623	15731	-	NM_005917	15856	+	NM_014562|OTX1|5013|orthodenticle homeobox 1##AK095680|OTX1|5013|orthodenticle homeobox 1##AK297308|OTX1|5013|orthodenticle homeobox 1##BC007621|OTX1|5013|orthodenticle homeobox 1##NM_001199770|OTX1|5013|orthodenticle homeobox 1##BC029477|EHBP1|23301|EH domain binding protein 1##NM_001142614|EHBP1|23301|EH domain binding protein 1##AK310290|WDPCP|51057|WD repeat containing planar cell polarity effector##BX538331|WDPCP|51057|WD repeat containing planar cell polarity effector##AK055030|WDPCP|51057|WD repeat containing planar cell polarity effector##AL833623|WDPCP|51057|WD repeat containing planar cell polarity effector##NM_005917|MDH1|4190|malate dehydrogenase 1, NAD (soluble)	0.999671	0.0	
chr2	98527946	98528092	reg1007958.p1	5.961	+	AK025852 TSC_hg19_v1_chr2_-_98408976	-119097	-	AB083211 NM_207519	-177151	+	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	-197977	+	AK297450 TSC_hg19_v1_chr2_-_98612338 NM_015348	84167	-	TSC_hg19_v1_chr2_-_98612395 AK098792	84384	-	NM_144992 AL832761 BC095480 TSC_hg19_v1_chr2_+_98703652 AK292397 AK057248 AL832635 BC150653 AK302390 BC026091	175627	+	AK025852|TMEM131|23505|transmembrane protein 131##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK297450|TMEM131|23505|transmembrane protein 131##NM_015348|TMEM131|23505|transmembrane protein 131##AK098792|TMEM131|23505|transmembrane protein 131##NM_144992|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832761|VWA3B|200403|von Willebrand factor A domain containing 3B##BC095480|VWA3B|200403|von Willebrand factor A domain containing 3B##AK292397|VWA3B|200403|von Willebrand factor A domain containing 3B##AK057248|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832635|VWA3B|200403|von Willebrand factor A domain containing 3B##BC150653|VWA3B|200403|von Willebrand factor A domain containing 3B##AK302390|VWA3B|200403|von Willebrand factor A domain containing 3B##BC026091|VWA3B|200403|von Willebrand factor A domain containing 3B	0.0	0.0	
chr11	62360828	62361008	reg1004533.p1	5.960	+	TSC_hg19_v1_chr11_-_62359020 BC110910 BC128263 AK074061 AK026000 AK292610 NM_022830	-1880	-	TSC_hg19_v1_chr11_+_62341675 AK125351	-19252	+	TSC_hg19_v1_chr11_-_62341364 NM_001404	-19515	-	TSC_hg19_v1_chr11_-_62368746 AK301569	7815	-	AF295807 AB527681 TSC_hg19_v1_chr11_-_62368932	8011	-	TSC_hg19_v1_chr11_-_62369137 BC023656 BC053650	8219	-	BC110910|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##BC128263|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##AK026000|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##AK292610|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##NM_022830|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##NM_001404|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK301569|MTA2|9219|metastasis associated 1 family, member 2##AF295807|MTA2|9219|metastasis associated 1 family, member 2##BC023656|MTA2|9219|metastasis associated 1 family, member 2##BC053650|MTA2|9219|metastasis associated 1 family, member 2	1.914392	0.0	denovo_WM_7:0:0.523	denovo_WM_7:-1:0.332	denovo_WM_7:13:0.280	denovo_WM_7:15:0.542
chr12	95965139	95965319	reg1005909.p2	5.960	+	AL136825 NM_032147	-19985	-	AK027434 TSC_hg19_v1_chr12_-_95942575 BC030704 NM_001042403	-22615	-	NM_006838 AK300836 TSC_hg19_v1_chr12_+_95867927 AK315559 U13261 AK055692 U29607 BC013782 AK091730 AX747149 AB463882 DQ891013 DQ894193	-97332	+	TSC_hg19_v1_chr12_-_96184346 AF297711 AK226070 AK315796	219140	-	BC136798 BC136799 AF278532 NM_021229 AF119916 TSC_hg19_v1_chr12_-_96184542	219297	-	TSC_hg19_v1_chr12_+_96252729 NM_003095 BC002505 X85372 AK311752 BC063397	287504	+	AL136825|USP44|84101|ubiquitin specific peptidase 44##NM_032147|USP44|84101|ubiquitin specific peptidase 44##AK027434|USP44|84101|ubiquitin specific peptidase 44##BC030704|USP44|84101|ubiquitin specific peptidase 44##NM_001042403|USP44|84101|ubiquitin specific peptidase 44##NM_006838|METAP2|10988|methionyl aminopeptidase 2##AK300836|METAP2|10988|methionyl aminopeptidase 2##AK315559|METAP2|10988|methionyl aminopeptidase 2##U13261|METAP2|10988|methionyl aminopeptidase 2##AK055692|METAP2|10988|methionyl aminopeptidase 2##BC013782|METAP2|10988|methionyl aminopeptidase 2##AK091730|METAP2|10988|methionyl aminopeptidase 2##DQ891013|METAP2|10988|methionyl aminopeptidase 2##DQ894193|METAP2|10988|methionyl aminopeptidase 2##AF297711|NTN4|59277|netrin 4##AK226070|NTN4|59277|netrin 4##AK315796|NTN4|59277|netrin 4##BC136798|NTN4|59277|netrin 4##BC136799|NTN4|59277|netrin 4##AF278532|NTN4|59277|netrin 4##NM_021229|NTN4|59277|netrin 4##AF119916|NTN4|59277|netrin 4##NM_003095|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC002505|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##X85372|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##AK311752|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC063397|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F	0.087962	0.0	
chr2	10222673	10222765	reg1006975.p2	5.960	+	TSC_hg19_v1_chr2_-_10220367 AB590068 AF544983 NM_001037160	-2290	-	AK091299 TSC_hg19_v1_chr2_-_10220297	-2483	-	AB463821 TSC_hg19_v1_chr2_+_10186406	-36374	+	NM_001165931 S40301 X59618 TSC_hg19_v1_chr2_+_10262805	40040	+	TSC_hg19_v1_chr2_+_10262865 NM_001034 AK092671 AK123010 AK313719 BC030154 BC001886 DQ891863 DQ895052 AB529158	40170	+	BC093999 BC094001 NM_182626	59260	+	AF544983|CYS1|192668|cystin 1##NM_001037160|CYS1|192668|cystin 1##AK091299|CYS1|192668|cystin 1##NM_001165931|RRM2|6241|ribonucleotide reductase M2##S40301|RRM2|6241|ribonucleotide reductase M2##X59618|RRM2|6241|ribonucleotide reductase M2##NM_001034|RRM2|6241|ribonucleotide reductase M2##AK092671|RRM2|6241|ribonucleotide reductase M2##AK123010|RRM2|6241|ribonucleotide reductase M2##AK313719|RRM2|6241|ribonucleotide reductase M2##BC030154|RRM2|6241|ribonucleotide reductase M2##BC001886|RRM2|6241|ribonucleotide reductase M2##DQ891863|RRM2|6241|ribonucleotide reductase M2##DQ895052|RRM2|6241|ribonucleotide reductase M2##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48	1.022758	0.0	denovo_WM_7:-58:0.666
chr5	33676086	33676243	reg1006675.p1	5.960	+	TSC_hg19_v1_chr5_+_33441070 AK095852 AK293620 AK311361 AK315713 AK296783 M63180 BC010578 AK308342 BC000517 BC088355 AK222804 AB384811 CU674250 EU831444 DQ891416 DQ894590	-235025	+	AK292346 TSC_hg19_v1_chr5_+_33440874 NM_152295	-235308	+	BC131540 X52282 TSC_hg19_v1_chr5_+_32711843 AF025998	-964359	+	BC139900 BC131733 AY358745 TSC_hg19_v1_chr5_-_33892090 BC058841 NM_030955	215881	-	TSC_hg19_v1_chr5_-_33892294 AJ250725	216131	-	D88437 NM_016568	260326	+	AK095852|TARS|6897|threonyl-tRNA synthetase##AK293620|TARS|6897|threonyl-tRNA synthetase##AK311361|TARS|6897|threonyl-tRNA synthetase##AK315713|TARS|6897|threonyl-tRNA synthetase##AK296783|TARS|6897|threonyl-tRNA synthetase##M63180|TARS|6897|threonyl-tRNA synthetase##BC010578|TARS|6897|threonyl-tRNA synthetase##AK308342|TARS|6897|threonyl-tRNA synthetase##BC000517|TARS|6897|threonyl-tRNA synthetase##BC088355|TARS|6897|threonyl-tRNA synthetase##AK222804|TARS|6897|threonyl-tRNA synthetase##EU831444|TARS|6897|threonyl-tRNA synthetase##DQ891416|TARS|6897|threonyl-tRNA synthetase##DQ894590|TARS|6897|threonyl-tRNA synthetase##AK292346|TARS|6897|threonyl-tRNA synthetase##NM_152295|TARS|6897|threonyl-tRNA synthetase##BC131540|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##X52282|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AF025998|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##BC139900|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC131733|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AY358745|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC058841|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##NM_030955|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AJ250725|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##D88437|RXFP3|51289|relaxin/insulin-like family peptide receptor 3##NM_016568|RXFP3|51289|relaxin/insulin-like family peptide receptor 3	0.953246	0.0	denovo_WM_7:3:0.901
chr12	9100387	9100548	reg1007123.p2	5.959	+	TSC_hg19_v1_chr12_+_9067153 AB209063 AK293893 NM_004426 BC073964 U89277 BC157850	-33198	+	NM_144670 AK122624 AK290355 AL832139 BX648231	-125285	+	TSC_hg19_v1_chr12_+_8850570 AK302847 NM_020734 BC006368	-249863	+	TSC_hg19_v1_chr12_-_9102242 AK291143 M16985 AK222792 BC024206 AK312689	1751	-	TSC_hg19_v1_chr12_-_9102262 NM_001207024 NM_002355	1842	-	AK316337 BC012621 AK301367 AF081675 AF097358 NM_005810 AF034952 DQ892820 DQ896066	41716	+	AB209063|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##AK293893|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##NM_004426|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC073964|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##U89277|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC157850|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##NM_144670|A2ML1|144568|alpha-2-macroglobulin-like 1##AK122624|A2ML1|144568|alpha-2-macroglobulin-like 1##AK290355|A2ML1|144568|alpha-2-macroglobulin-like 1##AL832139|A2ML1|144568|alpha-2-macroglobulin-like 1##BX648231|A2ML1|144568|alpha-2-macroglobulin-like 1##AK302847|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_020734|RIMKLB|57494|ribosomal modification protein rimK-like family member B##BC006368|RIMKLB|57494|ribosomal modification protein rimK-like family member B##AK291143|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##M16985|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##AK222792|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##BC024206|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##AK312689|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##NM_001207024|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##NM_002355|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##AK316337|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##BC012621|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##AK301367|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##AF081675|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##AF097358|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##NM_005810|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##AF034952|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##DQ892820|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1##DQ896066|KLRG1|10219|killer cell lectin-like receptor subfamily G, member 1	0.993643	0.0	denovo_WM_7:-26:0.375	denovo_WM_7:-27:0.591
chr20	5061114	5061272	reg1006692.p1	5.959	+	BC013112 AF164142 NM_203327	-70268	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-79033	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-256999	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	32422	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	39362	-	AK300558 AK311014 NM_002592	46033	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.982523	0.0	denovo_WM_7:30:0.970
chr6	129927916	129928038	reg1005451.p1	5.959	+	NM_000426 NM_001079823 Z26653	-723664	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1086321	-	AK124031 NM_001164687	-1688219	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	103349	-	NM_001010876	254438	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	411748	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.985987	0.0	denovo_WM_7:39:0.921
chr1	45859427	45859562	reg1000159.p1	5.958	+	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-53594	+	AB032924 AB032925 AB032926 AB025227 NM_001048174 AB032927 AB032928 AB032929 NM_001048172 NM_001048173 CU678424 AB590565 AB032920 AB032921 AB032922 AB032923 BC003178 AK293830 NM_001048171 NM_001128425 NM_012222	-53621	-	TSC_hg19_v1_chr1_+_45805845 AK024011	-53665	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	97339	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	106445	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	128084	-	AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##AB032924|MUTYH|4595|mutY homolog (E. coli)##AB032925|MUTYH|4595|mutY homolog (E. coli)##AB032926|MUTYH|4595|mutY homolog (E. coli)##AB025227|MUTYH|4595|mutY homolog (E. coli)##NM_001048174|MUTYH|4595|mutY homolog (E. coli)##AB032927|MUTYH|4595|mutY homolog (E. coli)##AB032928|MUTYH|4595|mutY homolog (E. coli)##AB032929|MUTYH|4595|mutY homolog (E. coli)##NM_001048172|MUTYH|4595|mutY homolog (E. coli)##NM_001048173|MUTYH|4595|mutY homolog (E. coli)##AB032920|MUTYH|4595|mutY homolog (E. coli)##AB032921|MUTYH|4595|mutY homolog (E. coli)##AB032922|MUTYH|4595|mutY homolog (E. coli)##AB032923|MUTYH|4595|mutY homolog (E. coli)##BC003178|MUTYH|4595|mutY homolog (E. coli)##AK293830|MUTYH|4595|mutY homolog (E. coli)##NM_001048171|MUTYH|4595|mutY homolog (E. coli)##NM_001128425|MUTYH|4595|mutY homolog (E. coli)##NM_012222|MUTYH|4595|mutY homolog (E. coli)##AK024011|TOE1|114034|target of EGR1, member 1 (nuclear)##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1	0.998997	0.0	denovo_WM_7:-73:0.310	denovo_WM_7:-74:0.310	denovo_WM_7:-75:0.310
chr3	101736651	101736772	reg1007671.p2	5.958	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-168337	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-189751	+	AK289689 NM_001134456	-238426	+	AY090780 NM_175056 BC143817	417156	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3348869	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3349111	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	0.987699	0.0	denovo_WM_7:-18:0.988
chr6	88204593	88204744	reg1006275.p1	5.958	+	TSC_hg19_v1_chr6_+_88182707 AJ810302 AJ810303 AB528735 AJ851888 AJ851889 AJ851890	-21956	+	TSC_hg19_v1_chr6_+_88182694 AK293696 AK299432 BC008372 BC017807 D87969	-21982	+	TSC_hg19_v1_chr6_+_88182658 NM_001168398 NM_006416	-22017	+	TSC_hg19_v1_chr6_-_88299686 AF143874 CU679707 BC105784 AK315669	95010	-	AK023550 TSC_hg19_v1_chr6_-_88299696 BC022341 BC010420	95039	-	TSC_hg19_v1_chr6_-_88299726 NM_020320	95071	-	AJ810302|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AJ810303|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AJ851888|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AJ851889|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AJ851890|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AK293696|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AK299432|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##BC008372|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##BC017807|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##D87969|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##NM_001168398|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##NM_006416|SLC35A1|10559|solute carrier family 35 (CMP-sialic acid transporter), member A1##AF143874|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##BC105784|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##AK315669|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##AK023550|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##BC022341|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##BC010420|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial##NM_020320|RARS2|57038|arginyl-tRNA synthetase 2, mitochondrial	0.018092	0.0	
chr11	107730280	107730391	reg1002804.p2	5.957	+	NM_017515	-422	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	-747	-	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	-830	-	TSC_hg19_v1_chr11_+_107799171 AK292969 BC028064 NM_017516 X99962	68900	+	NM_003478 AK125294	149097	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	149292	+	NM_017515|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK292969|RAB39A|54734|RAB39A, member RAS oncogene family##BC028064|RAB39A|54734|RAB39A, member RAS oncogene family##NM_017516|RAB39A|54734|RAB39A, member RAS oncogene family##X99962|RAB39A|54734|RAB39A, member RAS oncogene family##NM_003478|CUL5|8065|cullin 5##AK125294|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5	0.998598	0.0	
chr12	123868621	123868740	reg1004677.p2	5.957	+	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	-25	+	AK122703 TSC_hg19_v1_chr12_-_123849766	-18915	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	-19287	-	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	43	+	AY064546 TSC_hg19_v1_chr12_+_123873657	4949	+	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	52332	-	AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AK122703|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2	0.0	0.0	
chr10	98476996	98477134	reg1007240.p1	5.956	+	TSC_hg19_v1_chr10_-_98346798 AF269150 BC136788 BC136789 BC144412 NM_020123	-130242	-	TSC_hg19_v1_chr10_-_98346770 AK314348	-130287	-	TSC_hg19_v1_chr10_-_98346739 AF160213	-130393	-	BX648550 TSC_hg19_v1_chr10_-_98480272 AK125635 NM_152309	3176	-	TSC_hg19_v1_chr10_+_98592020 NM_001170765 NM_001170766 AL832106 AK308356 BC053359	114988	+	TSC_hg19_v1_chr10_-_98592186 AB593180	115135	-	AF269150|TM9SF3|56889|transmembrane 9 superfamily member 3##BC136788|TM9SF3|56889|transmembrane 9 superfamily member 3##BC136789|TM9SF3|56889|transmembrane 9 superfamily member 3##BC144412|TM9SF3|56889|transmembrane 9 superfamily member 3##NM_020123|TM9SF3|56889|transmembrane 9 superfamily member 3##AK314348|TM9SF3|56889|transmembrane 9 superfamily member 3##AF160213|TM9SF3|56889|transmembrane 9 superfamily member 3##BX648550|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##AK125635|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##NM_152309|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##NM_001170765|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170766|LCOR|84458|ligand dependent nuclear receptor corepressor##AL832106|LCOR|84458|ligand dependent nuclear receptor corepressor##BC053359|LCOR|84458|ligand dependent nuclear receptor corepressor	0.99693	0.0	
chr1	67807908	67808088	reg1004125.p1	5.956	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-34435	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-34917	+	AF461422 NM_144701	-175830	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	88025	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	88074	-	TSC_hg19_v1_chr1_-_67896086 AK312256	88087	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	1.710981	0.0	denovo_WM_7:-78:0.320	denovo_WM_7:-94:0.463
chr1	9847379	9847493	reg1007550.p1	5.956	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-135632	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-198480	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-247800	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	36459	-	TSC_hg19_v1_chr1_-_9884023 AK304813	36585	-	TSC_hg19_v1_chr1_-_9884024 BC033902	36608	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	0.995025	0.0	
chr3	161170018	161170157	reg1007287.p1	5.956	+	AF458592 BC037817 NM_001040100	-80279	-	AK308865 BC013317 NM_015938 TSC_hg19_v1_chr3_+_160939098 AF132941 AK296710	-230966	+	AK225664 TSC_hg19_v1_chr3_+_160939097	-230991	+	NM_001080440	44508	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	3626191	-	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	3744418	-	AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##AK308865|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC013317|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_015938|NMD3|51068|NMD3 homolog (S. cerevisiae)##AF132941|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK296710|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK225664|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_001080440|OTOL1|131149|otolin 1##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3	0.988006	0.0	
chr7	100738311	100738404	reg1004208.p1	5.956	+	BC005847 TSC_hg19_v1_chr7_+_100728767 AK092927 AX747810 BC048194 NM_030961 BC011882	-9597	+	TSC_hg19_v1_chr7_+_100663360 AJ606307 AJ606308 NM_001040105	-74992	+	NM_001164462	-125454	+	NM_000602 NM_001165413 TSC_hg19_v1_chr7_+_100770384 AK293248 AK297728 AK298048 AK316225 BC020765 X04729 BC010860 X04429 X12701 BC005927 M16006	32057	+	NM_001283 TSC_hg19_v1_chr7_+_100797756 AK312151 BC003561 AB015319	59371	+	BC063835 BC044212 TSC_hg19_v1_chr7_-_100808851 AK225839 NM_003378 BC036537	70495	-	BC005847|TRIM56|81844|tripartite motif containing 56##BC048194|TRIM56|81844|tripartite motif containing 56##NM_030961|TRIM56|81844|tripartite motif containing 56##BC011882|TRIM56|81844|tripartite motif containing 56##AJ606307|MUC17|140453|mucin 17, cell surface associated##AJ606308|MUC17|140453|mucin 17, cell surface associated##NM_001040105|MUC17|140453|mucin 17, cell surface associated##NM_001164462|MUC12|10071|mucin 12, cell surface associated##NM_000602|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001165413|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK293248|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK297728|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK298048|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##AK316225|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC020765|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04729|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC010860|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X04429|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##X12701|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##BC005927|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##M16006|SERPINE1|5054|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1##NM_001283|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AK312151|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC003561|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##AB015319|AP1S1|1174|adaptor-related protein complex 1, sigma 1 subunit##BC063835|VGF|7425|VGF nerve growth factor inducible##BC044212|VGF|7425|VGF nerve growth factor inducible##AK225839|VGF|7425|VGF nerve growth factor inducible##NM_003378|VGF|7425|VGF nerve growth factor inducible##BC036537|VGF|7425|VGF nerve growth factor inducible	0.993688	0.9939	denovo_WM_7:0:0.248	denovo_WM_7:0:0.248	denovo_WM_7:-1:0.248	denovo_WM_7:1:0.248	CTCF.p2:-62:0.994
chr10	11237927	11238107	reg1007826.p1	5.955	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-30525	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-30571	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-30592	+	NM_001080491	336256	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	415619	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	546381	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	0.998852	0.0	denovo_WM_7:-13:0.745	denovo_WM_7:-14:0.206
chr18	47715172	47715343	reg1008143.p1	5.955	+	TSC_hg19_v1_chr18_-_47376221 BC033527	-339068	-	TSC_hg19_v1_chr18_+_47340396 AK123464	-374866	+	TSC_hg19_v1_chr18_-_47340253 AK054673 NM_006111 AK314462	-374987	-	AB384567 AB032945 TSC_hg19_v1_chr18_-_47721518 AB290160 BC032511 NM_001080467	6115	-	AB527886 BC030606 NM_145020 AK302114	77575	-	AF078830 AF078831 AF078832 AF078833 EF488685 AB527669 NM_001204151	91116	-	BC033527|MYO5B|4645|myosin VB##AK054673|ACAA2|10449|acetyl-CoA acyltransferase 2##NM_006111|ACAA2|10449|acetyl-CoA acyltransferase 2##AK314462|ACAA2|10449|acetyl-CoA acyltransferase 2##AB032945|MYO5B|4645|myosin VB##AB290160|MYO5B|4645|myosin VB##BC032511|MYO5B|4645|myosin VB##NM_001080467|MYO5B|4645|myosin VB##BC030606|CCDC11|220136|coiled-coil domain containing 11##NM_145020|CCDC11|220136|coiled-coil domain containing 11##AK302114|CCDC11|220136|coiled-coil domain containing 11##AF078830|MBD1|4152|methyl-CpG binding domain protein 1##AF078831|MBD1|4152|methyl-CpG binding domain protein 1##AF078832|MBD1|4152|methyl-CpG binding domain protein 1##AF078833|MBD1|4152|methyl-CpG binding domain protein 1##EF488685|MBD1|4152|methyl-CpG binding domain protein 1##NM_001204151|MBD1|4152|methyl-CpG binding domain protein 1	1.984021	0.0	denovo_WM_7:-77:0.466	denovo_WM_7:-78:0.319	denovo_WM_7:-93:0.298	denovo_WM_7:-94:0.445
chr5	133473117	133473256	reg1007743.p1	5.955	+	NM_001134851 NM_201632 NM_201634 NM_213648 X59869 X59870 X59871 AK057580 AK093530	-21825	+	TSC_hg19_v1_chr5_+_133450435 BC048769 NM_003202 BC072023 EU446661 AL832816	-22667	+	AK095989 NM_003374	-132363	-	BC009839 U33760 BC025673 TSC_hg19_v1_chr5_-_133512639 BC065730	39437	-	TSC_hg19_v1_chr5_-_133512642 Z47087 BC020798 NM_006930 NM_170679	39496	-	AB451240 AB451365 CR457417 AB385080 X12646 TSC_hg19_v1_chr5_-_133561733 J03804	88458	-	NM_001134851|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201632|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201634|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_213648|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59869|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59870|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59871|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK057580|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK093530|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC048769|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_003202|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC072023|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##EU446661|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AL832816|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK095989|VDAC1|7416|voltage-dependent anion channel 1##NM_003374|VDAC1|7416|voltage-dependent anion channel 1##BC009839|SKP1|6500|S-phase kinase-associated protein 1##U33760|SKP1|6500|S-phase kinase-associated protein 1##BC025673|SKP1|6500|S-phase kinase-associated protein 1##BC065730|SKP1|6500|S-phase kinase-associated protein 1##Z47087|SKP1|6500|S-phase kinase-associated protein 1##BC020798|SKP1|6500|S-phase kinase-associated protein 1##NM_006930|SKP1|6500|S-phase kinase-associated protein 1##NM_170679|SKP1|6500|S-phase kinase-associated protein 1##AB451240|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##AB451365|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##CR457417|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##X12646|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##J03804|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme	1.218867	0.0	
chr9	100801328	100801448	reg1006756.p1	5.955	+	TSC_hg19_v1_chr9_+_100745672 Y07569	-55661	+	TSC_hg19_v1_chr9_+_100745652 BC019658 Y07570 BC013003	-55736	+	TSC_hg19_v1_chr9_+_100745633 AK223454 AK313733 U70439	-55775	+	TSC_hg19_v1_chr9_+_100819020 NM_018946 AK316608 BC000008 AK001659 BC019315 AF257466 CU676426 DQ892167 DQ895361	17627	+	TSC_hg19_v1_chr9_-_100881503 AB529155 DQ893293 DQ896623 AF220130 AF220131 D50919 NM_014788 NM_033219 BC006333 NM_033220 AK292825	80097	-	TSC_hg19_v1_chr9_-_100881526 AK055833	80156	-	Y07569|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC019658|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##Y07570|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC013003|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##AK223454|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##AK313733|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##U70439|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##NM_018946|NANS|54187|N-acetylneuraminic acid synthase##AK316608|NANS|54187|N-acetylneuraminic acid synthase##BC000008|NANS|54187|N-acetylneuraminic acid synthase##AK001659|NANS|54187|N-acetylneuraminic acid synthase##BC019315|NANS|54187|N-acetylneuraminic acid synthase##AF257466|NANS|54187|N-acetylneuraminic acid synthase##DQ892167|NANS|54187|N-acetylneuraminic acid synthase##DQ895361|NANS|54187|N-acetylneuraminic acid synthase##DQ893293|TRIM14|9830|tripartite motif containing 14##DQ896623|TRIM14|9830|tripartite motif containing 14##AF220130|TRIM14|9830|tripartite motif containing 14##AF220131|TRIM14|9830|tripartite motif containing 14##D50919|TRIM14|9830|tripartite motif containing 14##NM_014788|TRIM14|9830|tripartite motif containing 14##NM_033219|TRIM14|9830|tripartite motif containing 14##BC006333|TRIM14|9830|tripartite motif containing 14##NM_033220|TRIM14|9830|tripartite motif containing 14##AK292825|TRIM14|9830|tripartite motif containing 14##AK055833|TRIM14|9830|tripartite motif containing 14	0.924696	0.0	denovo_WM_7:-50:0.240	denovo_WM_7:-51:0.284
chr7	37581541	37581666	reg1008302.p1	5.954	+	NM_001206480	-92709	-	NM_014800 TSC_hg19_v1_chr7_-_37488556	-93048	-	TSC_hg19_v1_chr7_-_37488468 AL136787 AK001084 AK314349	-93135	-	BC043356 TSC_hg19_v1_chr7_+_37723380	141779	+	AB529245 AY288420 BC120951 BC120952 NM_181791	198392	+	BC036816 NM_016616	306595	+	NM_001206480|ELMO1|9844|engulfment and cell motility 1##NM_014800|ELMO1|9844|engulfment and cell motility 1##AL136787|ELMO1|9844|engulfment and cell motility 1##AK001084|ELMO1|9844|engulfment and cell motility 1##AK314349|ELMO1|9844|engulfment and cell motility 1##AY288420|GPR141|353345|G protein-coupled receptor 141##BC120951|GPR141|353345|G protein-coupled receptor 141##BC120952|GPR141|353345|G protein-coupled receptor 141##NM_181791|GPR141|353345|G protein-coupled receptor 141##BC036816|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##NM_016616|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)	0.514551	0.0	denovo_WM_7:-34:0.422
chr8	119447358	119447470	reg1007238.p1	5.954	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-323453	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-914372	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-914456	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	186711	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	186793	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	516806	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.998858	0.0	denovo_WM_7:-62:0.314	denovo_WM_7:-63:0.314	denovo_WM_7:-64:0.314
chr10	103762850	103762946	reg1006043.p1	5.952	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-159291	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-163286	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-184680	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	53014	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	62244	+	AK300588 TSC_hg19_v1_chr10_-_103874641	111721	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.921497	0.0	denovo_WM_7:32:0.229	denovo_WM_7:33:0.670
chr13	111006928	111007059	reg1007997.p1	5.952	+	TSC_hg19_v1_chr13_+_110959631 AK294920 NM_001846 X05562	-47372	+	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	-47484	-	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	-204258	-	BX648393 TSC_hg19_v1_chr13_+_111134980	127965	+	AK025912 TSC_hg19_v1_chr13_+_111137262	130271	+	TSC_hg19_v1_chr13_+_111138079 M24766	131095	+	AK294920|COL4A2|1284|collagen, type IV, alpha 2##NM_001846|COL4A2|1284|collagen, type IV, alpha 2##X05562|COL4A2|1284|collagen, type IV, alpha 2##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BX648393|COL4A2|1284|collagen, type IV, alpha 2##AK025912|COL4A2|1284|collagen, type IV, alpha 2##M24766|COL4A2|1284|collagen, type IV, alpha 2	0.966147	0.0	denovo_WM_7:-11:0.791
chr15	65523741	65523871	reg1007906.p1	5.952	+	BC035776 AF035408 AY358904 AK225652 AK225926 AK313352 TSC_hg19_v1_chr15_-_65503811 NM_003613	-19994	-	TSC_hg19_v1_chr15_-_65477676 AL136922 AK308133 AK292316 AK310614	-46120	-	TSC_hg19_v1_chr15_-_65477471 BC130373 BC136487 BC144166 AJ006267 NM_006660	-46305	-	BC006389 NM_017851 TSC_hg19_v1_chr15_-_65579223 AK000516	55354	-	BC042054 TSC_hg19_v1_chr15_-_65670341 BC067107 NM_004884	146545	-	TSC_hg19_v1_chr15_-_65715258 AB529157	191439	-	BC035776|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AF035408|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AY358904|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225652|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225926|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK313352|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##NM_003613|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AL136922|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK308133|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK292316|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK310614|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC130373|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC136487|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC144166|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AJ006267|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##NM_006660|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC006389|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##NM_017851|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##AK000516|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##BC042054|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##BC067107|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##NM_004884|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3	1.142673	0.0	denovo_WM_7:-5:0.951
chr12	54880089	54880207	reg1006648.p1	5.951	+	TSC_hg19_v1_chr12_-_54867387 BC105587 AK098819 NM_144594	-12764	-	BC021179 TSC_hg19_v1_chr12_-_54867359	-12796	-	TSC_hg19_v1_chr12_-_54813025 BC008786 AK312414 NM_002205	-67113	-	TSC_hg19_v1_chr12_+_54891516 NM_005337	11357	+	TSC_hg19_v1_chr12_+_54891535 M58285	11381	+	TSC_hg19_v1_chr12_+_54891545 BC093769 BC093771 BC143355	11394	+	BC105587|GTSF1|121355|gametocyte specific factor 1##AK098819|GTSF1|121355|gametocyte specific factor 1##NM_144594|GTSF1|121355|gametocyte specific factor 1##BC021179|GTSF1|121355|gametocyte specific factor 1##BC008786|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##AK312414|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##NM_002205|ITGA5|3678|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)##NM_005337|NCKAP1L|3071|NCK-associated protein 1-like##M58285|NCKAP1L|3071|NCK-associated protein 1-like##BC093769|NCKAP1L|3071|NCK-associated protein 1-like##BC093771|NCKAP1L|3071|NCK-associated protein 1-like##BC143355|NCKAP1L|3071|NCK-associated protein 1-like	0.994886	0.0	denovo_WM_7:-15:0.713	denovo_WM_7:-17:0.227
chr18	12948729	12948815	reg1007021.p2	5.951	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-708	+	TSC_hg19_v1_chr18_+_12948009 AK314403	-766	+	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	-787	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	42573	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	270013	+	NM_001003674 NM_001003675	662892	+	AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1	0.991684	0.0	
chr2	215368417	215368549	reg1007999.p2	5.951	+	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	-92023	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-1219326	+	AK124960 NM_001242575	-1219555	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	305876	-	AY033486 NM_015657	528326	-	BC144073 AY219711 NM_173076	634626	-	BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	0.996904	0.0	denovo_WM_7:-20:0.336	denovo_WM_7:-22:0.426
chr5	72287402	72287521	reg1004662.p1	5.951	+	TSC_hg19_v1_chr5_+_72251897 AK291782 BC006004 AK295141 BC014311 AL831971 AM393291 AM393840 CU676963	-35560	+	TSC_hg19_v1_chr5_+_72251873 AK056770	-35590	+	TSC_hg19_v1_chr5_+_72251813 BC137070 NM_001146032 NM_138782	-35676	+	TSC_hg19_v1_chr5_+_72416401 NM_001161342 NM_173490 BC018083	128975	+	AK315460 NM_153217 AK055830	181570	+	U13222 TSC_hg19_v1_chr5_-_72743884	456398	-	AK291782|FCHO2|115548|FCH domain only 2##BC006004|FCHO2|115548|FCH domain only 2##AK295141|FCHO2|115548|FCH domain only 2##BC014311|FCHO2|115548|FCH domain only 2##AL831971|FCHO2|115548|FCH domain only 2##AM393291|FCHO2|115548|FCH domain only 2##AM393840|FCHO2|115548|FCH domain only 2##BC137070|FCHO2|115548|FCH domain only 2##NM_001146032|FCHO2|115548|FCH domain only 2##NM_138782|FCHO2|115548|FCH domain only 2##NM_001161342|TMEM171|134285|transmembrane protein 171##NM_173490|TMEM171|134285|transmembrane protein 171##BC018083|TMEM171|134285|transmembrane protein 171##AK315460|TMEM174|134288|transmembrane protein 174##NM_153217|TMEM174|134288|transmembrane protein 174##AK055830|TMEM174|134288|transmembrane protein 174##U13222|FOXD1|2297|forkhead box D1	0.287862	0.0	denovo_WM_7:6:0.273
chr9	36555951	36556074	reg1007409.p2	5.951	+	TSC_hg19_v1_chr9_-_36401191 NM_194330	-154837	-	TSC_hg19_v1_chr9_-_36400891 AK093480 AX748155 AF394047 NM_194328 NM_194332	-155115	-	AL136817 BC033786 NM_022781 NM_194329	-155759	-	TSC_hg19_v1_chr9_+_36572891 AK222811 AK296820 D79997 AK302374 AK293284 AK293423 AK300761 AK293447 AK309470 BC014039 NM_014791 AB183428 AK299164 AK300821 AB183427 AK301131	16912	+	TSC_hg19_v1_chr9_-_37034361 NM_016734	478404	-	TSC_hg19_v1_chr9_+_37079908 AK091718	523894	+	NM_194330|RNF38|152006|ring finger protein 38##AK093480|RNF38|152006|ring finger protein 38##AX748155|RNF38|152006|ring finger protein 38##AF394047|RNF38|152006|ring finger protein 38##NM_194328|RNF38|152006|ring finger protein 38##NM_194332|RNF38|152006|ring finger protein 38##AL136817|RNF38|152006|ring finger protein 38##BC033786|RNF38|152006|ring finger protein 38##NM_022781|RNF38|152006|ring finger protein 38##NM_194329|RNF38|152006|ring finger protein 38##AK222811|MELK|9833|maternal embryonic leucine zipper kinase##AK296820|MELK|9833|maternal embryonic leucine zipper kinase##D79997|MELK|9833|maternal embryonic leucine zipper kinase##AK302374|MELK|9833|maternal embryonic leucine zipper kinase##AK293284|MELK|9833|maternal embryonic leucine zipper kinase##AK293423|MELK|9833|maternal embryonic leucine zipper kinase##AK300761|MELK|9833|maternal embryonic leucine zipper kinase##AK293447|MELK|9833|maternal embryonic leucine zipper kinase##AK309470|MELK|9833|maternal embryonic leucine zipper kinase##BC014039|MELK|9833|maternal embryonic leucine zipper kinase##NM_014791|MELK|9833|maternal embryonic leucine zipper kinase##AB183428|MELK|9833|maternal embryonic leucine zipper kinase##AK299164|MELK|9833|maternal embryonic leucine zipper kinase##AK300821|MELK|9833|maternal embryonic leucine zipper kinase##AB183427|MELK|9833|maternal embryonic leucine zipper kinase##AK301131|MELK|9833|maternal embryonic leucine zipper kinase##NM_016734|PAX5|5079|paired box 5##AK091718|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene	0.0	0.788749	CTCF.p2:2:0.223	CTCF.p2:3:0.566
chr3	140432577	140432691	reg1001423.p1	5.950	+	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	-35675	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-778382	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-778616	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	228133	+	TSC_hg19_v1_chr3_+_140770412 BC051354	337844	+	AF403029 BC008324 NM_080862 AK056367	338123	+	NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AF403029|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##BC008324|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##NM_080862|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AK056367|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.991641	0.0	denovo_WM_7:-50:0.432	denovo_WM_7:-51:0.432
chr7	134787310	134787439	reg1005711.p1	5.950	+	TSC_hg19_v1_chr7_+_134671258 AK302827 NM_178563 BC030651 AL832281 AK023045 AK311252	-116089	+	BC014035 TSC_hg19_v1_chr7_+_134576197 BC061926 BC005006 D90452 D90453	-211101	+	NM_033139 NM_033140 TSC_hg19_v1_chr7_+_134576161	-211219	+	NM_018295 TSC_hg19_v1_chr7_+_134832838 AK001862 AK225055 AK301268 BC020942	45473	+	NM_001243753 NM_001243755	66851	-	TSC_hg19_v1_chr7_-_134855252 NM_001243752	67893	-	AK302827|AGBL3|340351|ATP/GTP binding protein-like 3##NM_178563|AGBL3|340351|ATP/GTP binding protein-like 3##BC030651|AGBL3|340351|ATP/GTP binding protein-like 3##AL832281|AGBL3|340351|ATP/GTP binding protein-like 3##AK023045|AGBL3|340351|ATP/GTP binding protein-like 3##BC014035|CALD1|800|caldesmon 1##BC061926|CALD1|800|caldesmon 1##BC005006|CALD1|800|caldesmon 1##D90452|CALD1|800|caldesmon 1##D90453|CALD1|800|caldesmon 1##NM_033139|CALD1|800|caldesmon 1##NM_033140|CALD1|800|caldesmon 1##NM_018295|TMEM140|55281|transmembrane protein 140##AK001862|TMEM140|55281|transmembrane protein 140##AK225055|TMEM140|55281|transmembrane protein 140##AK301268|TMEM140|55281|transmembrane protein 140##BC020942|TMEM140|55281|transmembrane protein 140##NM_001243753|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243755|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243752|C7orf49|78996|chromosome 7 open reading frame 49	0.962889	0.0	denovo_WM_7:8:0.605	denovo_WM_7:11:0.267
chr8	8475646	8475826	reg1005839.p2	5.950	+	AK122582 NM_001080826	-236514	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-299848	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-389594	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	83962	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	275202	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	384629	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.0	0.0	
chr1	115053992	115054097	reg1006978.p1	5.949	+	TSC_hg19_v1_chr1_-_115053767 AF119043 AF220136 AF220137 NM_015906 NM_033020	-266	-	TSC_hg19_v1_chr1_-_115053724 AB384564 AB029036	-334	-	BC044948 NM_001253772	-357573	-	AB451245 AB451369 AB528339 AF081788 BT019390 CR542037 CU675083 DQ892529 EU176700 EU832613 EU832684 TSC_hg19_v1_chr1_-_115124237 BC005285 BC012623 BC039238 AK222637 AK313141 BC022880 AB020623 NM_005872	70199	-	TSC_hg19_v1_chr1_-_115212683 CR749576 BX647950 NM_198459	158636	-	AB527106 AK291349 AK314252 BC056678 TSC_hg19_v1_chr1_-_115238168 BC022290 M60092 AK097077 NM_000036 NM_001172626	184120	-	AF119043|TRIM33|51592|tripartite motif containing 33##AF220136|TRIM33|51592|tripartite motif containing 33##AF220137|TRIM33|51592|tripartite motif containing 33##NM_015906|TRIM33|51592|tripartite motif containing 33##NM_033020|TRIM33|51592|tripartite motif containing 33##AB029036|TRIM33|51592|tripartite motif containing 33##BC044948|SYT6|148281|synaptotagmin VI##NM_001253772|SYT6|148281|synaptotagmin VI##AB451245|BCAS2|10286|breast carcinoma amplified sequence 2##AB451369|BCAS2|10286|breast carcinoma amplified sequence 2##AF081788|BCAS2|10286|breast carcinoma amplified sequence 2##BT019390|BCAS2|10286|breast carcinoma amplified sequence 2##CR542037|BCAS2|10286|breast carcinoma amplified sequence 2##DQ892529|BCAS2|10286|breast carcinoma amplified sequence 2##EU176700|BCAS2|10286|breast carcinoma amplified sequence 2##EU832613|BCAS2|10286|breast carcinoma amplified sequence 2##EU832684|BCAS2|10286|breast carcinoma amplified sequence 2##BC005285|BCAS2|10286|breast carcinoma amplified sequence 2##BC012623|BCAS2|10286|breast carcinoma amplified sequence 2##BC039238|BCAS2|10286|breast carcinoma amplified sequence 2##AK222637|BCAS2|10286|breast carcinoma amplified sequence 2##AK313141|BCAS2|10286|breast carcinoma amplified sequence 2##BC022880|BCAS2|10286|breast carcinoma amplified sequence 2##AB020623|BCAS2|10286|breast carcinoma amplified sequence 2##NM_005872|BCAS2|10286|breast carcinoma amplified sequence 2##CR749576|DENND2C|163259|DENN/MADD domain containing 2C##BX647950|DENND2C|163259|DENN/MADD domain containing 2C##NM_198459|DENND2C|163259|DENN/MADD domain containing 2C##AK291349|AMPD1|270|adenosine monophosphate deaminase 1##AK314252|AMPD1|270|adenosine monophosphate deaminase 1##BC056678|AMPD1|270|adenosine monophosphate deaminase 1##M60092|AMPD1|270|adenosine monophosphate deaminase 1##AK097077|AMPD1|270|adenosine monophosphate deaminase 1##NM_000036|AMPD1|270|adenosine monophosphate deaminase 1##NM_001172626|AMPD1|270|adenosine monophosphate deaminase 1	0.0	0.0	
chr1	65525728	65525850	reg1007952.p1	5.949	+	TSC_hg19_v1_chr1_-_65432203 BC111401	-93561	-	TSC_hg19_v1_chr1_-_65432181 BC062431 BC009079 NM_002227	-93775	-	TSC_hg19_v1_chr1_+_65210850 AB046799 NM_018211 AB463230	-314990	+	TSC_hg19_v1_chr1_+_65613263 NM_203464 BC146653 BC016180 AK309057 BC066944 NM_001005353	87572	+	TSC_hg19_v1_chr1_+_65613835 NM_013410 AK025926 AK313611 X60673	88059	+	TSC_hg19_v1_chr1_+_65613971 BC040224 BC136886 BC136887 BC148270 CR456830 CU688216 DQ892294 DQ895494	88241	+	BC111401|JAK1|3716|Janus kinase 1##BC062431|JAK1|3716|Janus kinase 1##BC009079|JAK1|3716|Janus kinase 1##NM_002227|JAK1|3716|Janus kinase 1##AB046799|RAVER2|55225|ribonucleoprotein, PTB-binding 2##NM_018211|RAVER2|55225|ribonucleoprotein, PTB-binding 2##NM_203464|AK4|205|adenylate kinase 4##BC146653|AK4|205|adenylate kinase 4##BC016180|AK4|205|adenylate kinase 4##AK309057|AK4|205|adenylate kinase 4##BC066944|AK4|205|adenylate kinase 4##NM_001005353|AK4|205|adenylate kinase 4##NM_013410|AK4|205|adenylate kinase 4##AK025926|AK4|205|adenylate kinase 4##AK313611|AK4|205|adenylate kinase 4##X60673|AK4|205|adenylate kinase 4##BC040224|AK4|205|adenylate kinase 4##BC136886|AK4|205|adenylate kinase 4##BC136887|AK4|205|adenylate kinase 4##BC148270|AK4|205|adenylate kinase 4##CR456830|AK4|205|adenylate kinase 4##DQ892294|AK4|205|adenylate kinase 4##DQ895494|AK4|205|adenylate kinase 4	0.994046	0.044301	denovo_WM_7:33:0.919
chrX	78514704	78514884	reg1000789.p1	5.949	+	AF345567 BC104922 BC104924 NM_032553	-88326	+	NM_014499 NM_198333 AK313218 AK292138 BC051875	-313922	+	NM_005296 AK314134	-511586	+	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	107989	-	AK313154 NM_001171581 NM_004867	108233	-	AK097514 NM_001109878 NM_001109879	755460	+	AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##NM_014499|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_198333|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK313218|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK292138|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##BC051875|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_005296|LPAR4|2846|lysophosphatidic acid receptor 4##AK314134|LPAR4|2846|lysophosphatidic acid receptor 4##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A##AK313154|ITM2A|9452|integral membrane protein 2A##NM_001171581|ITM2A|9452|integral membrane protein 2A##NM_004867|ITM2A|9452|integral membrane protein 2A##AK097514|TBX22|50945|T-box 22##NM_001109878|TBX22|50945|T-box 22##NM_001109879|TBX22|50945|T-box 22	0.0	0.0	
chr15	59311087	59311188	reg1003195.p1	5.948	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-30858	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-31280	+	TSC_hg19_v1_chr15_-_59225851 BC140851 NM_001013843 NM_024755	-85306	-	TSC_hg19_v1_chr15_+_59359061 AK095327	47941	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	86234	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	187915	+	BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##BC140851|SLTM|79811|SAFB-like, transcription modulator##NM_001013843|SLTM|79811|SAFB-like, transcription modulator##NM_024755|SLTM|79811|SAFB-like, transcription modulator##AK095327|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B	0.977051	0.0	denovo_WM_7:-4:0.592	denovo_WM_7:-5:0.319
chr4	2600859	2601002	reg1007955.p1	5.948	+	NM_001185009 BC031935	-129750	+	TSC_hg19_v1_chr4_+_2470846 AK312534 AK309509 U95140	-130054	+	TSC_hg19_v1_chr4_+_2470845 AB000468	-130086	+	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	26243	+	AK026176 NM_001161527	156820	-	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	157133	-	NM_001185009|RNF4|6047|ring finger protein 4##BC031935|RNF4|6047|ring finger protein 4##AK312534|RNF4|6047|ring finger protein 4##AK309509|RNF4|6047|ring finger protein 4##U95140|RNF4|6047|ring finger protein 4##AB000468|RNF4|6047|ring finger protein 4##AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2	0.999017	0.0	denovo_WM_7:18:0.244	denovo_WM_7:21:0.681
chr8	9226600	9226721	reg1007109.p2	5.948	+	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	-217560	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	-218482	-	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-366155	+	TSC_hg19_v1_chr8_+_9413421 BC098394	186745	+	TSC_hg19_v1_chr8_+_9413423 AK302031	186763	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	186821	+	AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.0	0.340255	CTCF.p2:19:0.340
chr11	111269093	111269212	reg1006990.p1	5.947	+	NM_006235	-18996	-	CU689418 DQ890869 EU176491 AB464058 X83504 BC032549 Z47550 AK313573 TSC_hg19_v1_chr11_-_111250000	-19200	-	TSC_hg19_v1_chr11_+_111170033 AK292195 NM_001136105	-99119	+	BC031045 NM_017589	113918	-	AK128145 NM_001100388 NM_207430 BC039505	116370	+	AK055539 NM_178834	142080	+	NM_006235|POU2AF1|5450|POU class 2 associating factor 1##DQ890869|POU2AF1|5450|POU class 2 associating factor 1##EU176491|POU2AF1|5450|POU class 2 associating factor 1##X83504|POU2AF1|5450|POU class 2 associating factor 1##BC032549|POU2AF1|5450|POU class 2 associating factor 1##Z47550|POU2AF1|5450|POU class 2 associating factor 1##AK313573|POU2AF1|5450|POU class 2 associating factor 1##AK292195|C11orf93|120376|chromosome 11 open reading frame 93##NM_001136105|C11orf93|120376|chromosome 11 open reading frame 93##BC031045|BTG4|54766|B-cell translocation gene 4##NM_017589|BTG4|54766|B-cell translocation gene 4##AK128145|C11orf88|399949|chromosome 11 open reading frame 88##NM_001100388|C11orf88|399949|chromosome 11 open reading frame 88##NM_207430|C11orf88|399949|chromosome 11 open reading frame 88##BC039505|C11orf88|399949|chromosome 11 open reading frame 88##AK055539|LAYN|143903|layilin##NM_178834|LAYN|143903|layilin	0.994553	0.0	denovo_WM_7:36:0.684
chr1	205140579	205140695	reg1008854.p1	5.947	+	TSC_hg19_v1_chr1_-_205091144 NM_001193272 NM_001193273 NM_005057	-49490	-	AB527310 CU691040 DQ891205 DQ894388 BC075059 BC075060 AK290137 BC037284 AK296978 TSC_hg19_v1_chr1_-_205091104 X85134 BC053856	-49570	-	BC061592 AY359081 NM_203376 AK303432	-87050	-	TSC_hg19_v1_chr1_-_205180683 AB384485 AY208850 EU832787 GQ129280 BC072406 AK298011 BC117411 BC143603 BC053627	40036	-	TSC_hg19_v1_chr1_-_205180700 AY429674 BC060870 NM_015375 NM_199462	40082	-	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	56446	+	NM_001193272|RBBP5|5929|retinoblastoma binding protein 5##NM_001193273|RBBP5|5929|retinoblastoma binding protein 5##NM_005057|RBBP5|5929|retinoblastoma binding protein 5##DQ891205|RBBP5|5929|retinoblastoma binding protein 5##DQ894388|RBBP5|5929|retinoblastoma binding protein 5##BC075059|RBBP5|5929|retinoblastoma binding protein 5##BC075060|RBBP5|5929|retinoblastoma binding protein 5##AK290137|RBBP5|5929|retinoblastoma binding protein 5##BC037284|RBBP5|5929|retinoblastoma binding protein 5##AK296978|RBBP5|5929|retinoblastoma binding protein 5##X85134|RBBP5|5929|retinoblastoma binding protein 5##BC053856|RBBP5|5929|retinoblastoma binding protein 5##BC061592|TMEM81|388730|transmembrane protein 81##AY359081|TMEM81|388730|transmembrane protein 81##NM_203376|TMEM81|388730|transmembrane protein 81##AK303432|TMEM81|388730|transmembrane protein 81##AY208850|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##EU832787|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##GQ129280|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC072406|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AK298011|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC117411|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC143603|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC053627|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AY429674|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC060870|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_015375|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_199462|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2	0.995086	0.0	
chr4	87994797	87994938	reg1000623.p2	5.947	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-26616	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-66546	+	TSC_hg19_v1_chr4_+_87857481 L13743	-137384	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	146795	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	249158	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	317404	-	AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11	0.443665	0.0	denovo_WM_7:-4:0.363
chr10	18948921	18949092	reg1007433.p2	5.946	+	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	-585	+	BC033534 TSC_hg19_v1_chr10_-_18948215	-809	-	AK074323 BC035778 NM_182543	-8474	-	TSC_hg19_v1_chr10_+_20105360 AK304591 AY358486 NM_032812	1156367	+	NM_006393 Y16241	2237524	-	BC140744 BC144447 NM_001010896 NM_001177483	2486481	-	NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6##AK304591|PLXDC2|84898|plexin domain containing 2##AY358486|PLXDC2|84898|plexin domain containing 2##NM_032812|PLXDC2|84898|plexin domain containing 2##NM_006393|NEBL|10529|nebulette##Y16241|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113	0.815637	0.0	denovo_WM_7:-8:0.791
chr13	77600021	77600106	reg1000079.p2	5.946	+	TSC_hg19_v1_chr13_+_77566215 NM_006493 AB528107 AK075109 AK304001	-33894	+	TSC_hg19_v1_chr13_-_77460541 AF359381 AK128363 AK311268 AK311543 NM_138444	-139456	-	BC013764 TSC_hg19_v1_chr13_-_77460431	-139663	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	1219	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	1268	-	NM_015057 TSC_hg19_v1_chr13_-_77901230	301140	-	NM_006493|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK075109|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK304001|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AF359381|KCTD12|115207|potassium channel tetramerisation domain containing 12##AK128363|KCTD12|115207|potassium channel tetramerisation domain containing 12##NM_138444|KCTD12|115207|potassium channel tetramerisation domain containing 12##BC013764|KCTD12|115207|potassium channel tetramerisation domain containing 12##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_015057|MYCBP2|23077|MYC binding protein 2	0.0	0.0	
chr3	71447413	71447556	reg1006957.p2	5.946	+	AK092383 AX747510 NM_001244812	-93574	-	TSC_hg19_v1_chr3_-_71294229 AK074321 NM_001244814	-153212	-	TSC_hg19_v1_chr3_-_71180072 NM_001244815	-267405	-	TSC_hg19_v1_chr3_-_71542628 AF146696 BC054505	95183	-	AF250920 NM_001244816	145223	-	TSC_hg19_v1_chr3_-_71632874 AK122710 NM_001244808 BC005055 BC054815 BC071893 BC080521 BC068481 NM_001012505 NM_001244810 NM_032682	185494	-	AK092383|FOXP1|27086|forkhead box P1##NM_001244812|FOXP1|27086|forkhead box P1##AK074321|FOXP1|27086|forkhead box P1##NM_001244814|FOXP1|27086|forkhead box P1##NM_001244815|FOXP1|27086|forkhead box P1##AF146696|FOXP1|27086|forkhead box P1##BC054505|FOXP1|27086|forkhead box P1##AF250920|FOXP1|27086|forkhead box P1##NM_001244816|FOXP1|27086|forkhead box P1##AK122710|FOXP1|27086|forkhead box P1##NM_001244808|FOXP1|27086|forkhead box P1##BC005055|FOXP1|27086|forkhead box P1##BC054815|FOXP1|27086|forkhead box P1##BC071893|FOXP1|27086|forkhead box P1##BC080521|FOXP1|27086|forkhead box P1##BC068481|FOXP1|27086|forkhead box P1##NM_001012505|FOXP1|27086|forkhead box P1##NM_001244810|FOXP1|27086|forkhead box P1##NM_032682|FOXP1|27086|forkhead box P1	0.0	0.0	
chr4	85671536	85671684	reg1009934.p1	5.946	+	NM_001263 U65887	-167517	+	NM_006168	-252224	-	TSC_hg19_v1_chr4_+_84457420 DQ345298 BC090956 AY358100 NM_032717 DQ324782	-1214029	+	NM_014991	215933	-	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	724733	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	1028238	+	NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_006168|NKX6-1|4825|NK6 homeobox 1##DQ345298|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9##BC090956|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9##AY358100|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9##NM_032717|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9##DQ324782|AGPAT9|84803|1-acylglycerol-3-phosphate O-acyltransferase 9##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24	0.779172	0.826064	CTCF.p2:2:0.826	denovo_WM_7:18:0.676
chr1	150743582	150743672	reg1006427.p1	5.945	+	TSC_hg19_v1_chr1_-_150738295 AK226095 M90696 NM_001199739 NM_004079	-5265	-	TSC_hg19_v1_chr1_-_150738255 AK301472 AK314482	-5359	-	TSC_hg19_v1_chr1_-_150738233 BC002642	-5395	-	U20280 AY429530 AK312880 AK130134 TSC_hg19_v1_chr1_-_150780787 U13665 AK308229 BC016058 NM_000396	37183	-	AK304772 CU687456 AB385121 TSC_hg19_v1_chr1_-_150849057 AB209877 BC041121	105425	-	TSC_hg19_v1_chr1_-_150849073 AK315812 AK291705 AF001307 M69238 AK223459	105459	-	AK226095|CTSS|1520|cathepsin S##M90696|CTSS|1520|cathepsin S##NM_001199739|CTSS|1520|cathepsin S##NM_004079|CTSS|1520|cathepsin S##AK301472|CTSS|1520|cathepsin S##AK314482|CTSS|1520|cathepsin S##BC002642|CTSS|1520|cathepsin S##U20280|CTSK|1513|cathepsin K##AY429530|CTSK|1513|cathepsin K##AK312880|CTSK|1513|cathepsin K##AK130134|CTSK|1513|cathepsin K##U13665|CTSK|1513|cathepsin K##AK308229|CTSK|1513|cathepsin K##BC016058|CTSK|1513|cathepsin K##NM_000396|CTSK|1513|cathepsin K##AK304772|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AB209877|ARNT|405|aryl hydrocarbon receptor nuclear translocator##BC041121|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK315812|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK291705|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AF001307|ARNT|405|aryl hydrocarbon receptor nuclear translocator##M69238|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK223459|ARNT|405|aryl hydrocarbon receptor nuclear translocator	0.998858	0.0	denovo_WM_7:49:0.314	denovo_WM_7:50:0.314	denovo_WM_7:51:0.314
chr1	229298661	229298788	reg1008930.p1	5.945	+	TSC_hg19_v1_chr1_+_228871199 AB209511 AK289971 BC040076 AF282258 AB074878 AB051826 AF378087	-427425	+	TSC_hg19_v1_chr1_+_228870806 NM_021205 AF211836	-427880	+	AK055963 TSC_hg19_v1_chr1_+_228783500	-515293	+	AK313807 TSC_hg19_v1_chr1_+_229406857 BC004309 NM_004578 AY585832	108161	+	BC002438 TSC_hg19_v1_chr1_+_229407039 AK223009 M28211 AB463206 AF498934 AM392940 AM393585 DQ892636 DQ895874	108326	+	BC107681 NM_006542	141404	+	AB209511|RHOU|58480|ras homolog gene family, member U##AK289971|RHOU|58480|ras homolog gene family, member U##BC040076|RHOU|58480|ras homolog gene family, member U##AF282258|RHOU|58480|ras homolog gene family, member U##AB074878|RHOU|58480|ras homolog gene family, member U##AB051826|RHOU|58480|ras homolog gene family, member U##AF378087|RHOU|58480|ras homolog gene family, member U##NM_021205|RHOU|58480|ras homolog gene family, member U##AF211836|RHOU|58480|ras homolog gene family, member U##AK055963|DUSP5P|574029|dual specificity phosphatase 5 pseudogene##AK313807|RAB4A|5867|RAB4A, member RAS oncogene family##BC004309|RAB4A|5867|RAB4A, member RAS oncogene family##NM_004578|RAB4A|5867|RAB4A, member RAS oncogene family##AY585832|RAB4A|5867|RAB4A, member RAS oncogene family##BC002438|RAB4A|5867|RAB4A, member RAS oncogene family##AK223009|RAB4A|5867|RAB4A, member RAS oncogene family##M28211|RAB4A|5867|RAB4A, member RAS oncogene family##AF498934|RAB4A|5867|RAB4A, member RAS oncogene family##AM392940|RAB4A|5867|RAB4A, member RAS oncogene family##AM393585|RAB4A|5867|RAB4A, member RAS oncogene family##DQ892636|RAB4A|5867|RAB4A, member RAS oncogene family##DQ895874|RAB4A|5867|RAB4A, member RAS oncogene family##BC107681|SPHAR|10638|S-phase response (cyclin related)##NM_006542|SPHAR|10638|S-phase response (cyclin related)	1.098237	0.0	
chr17	29822318	29822469	reg1006893.p1	5.944	+	TSC_hg19_v1_chr17_+_29815032 AK097424	-7332	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	-103529	+	AY169244 NM_032932 TSC_hg19_v1_chr17_+_29718692	-103726	+	AF407672 AJ272196 TSC_hg19_v1_chr17_-_30186264 AK024772 BC012386 BC035483 NM_018405	363878	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	406273	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	406338	-	AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AY169244|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##NM_032932|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AF407672|C17orf79|55352|chromosome 17 open reading frame 79##AJ272196|C17orf79|55352|chromosome 17 open reading frame 79##AK024772|C17orf79|55352|chromosome 17 open reading frame 79##BC012386|C17orf79|55352|chromosome 17 open reading frame 79##BC035483|C17orf79|55352|chromosome 17 open reading frame 79##NM_018405|C17orf79|55352|chromosome 17 open reading frame 79##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)	1.19627	0.0	denovo_WM_7:9:0.265
chr2	232542592	232542750	reg1005863.p2	5.944	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-85054	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-147517	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-163589	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	30563	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	30661	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	103254	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	0.998017	0.0	denovo_WM_7:97:0.929
chr11	47875063	47875221	reg1006561.p1	5.943	+	TSC_hg19_v1_chr11_-_47869903 BC125227 BC125228 BC009822 NM_015231	-5164	-	AB385295 D83781 TSC_hg19_v1_chr11_-_47869883 AK026236 BX647634 AK302396 AK304308 AL832029	-5261	-	EU832174 EU832267 TSC_hg19_v1_chr11_-_47788867 AK054636 BC037404 BC006557 NM_015308 AB023231	-86190	-	TSC_hg19_v1_chr11_+_48002110 NM_001098503 NM_002843 U10886	126949	+	D37781 TSC_hg19_v1_chr11_+_48002120	126978	+	TSC_hg19_v1_chr11_+_48002270 AL359057 BC063417	127217	+	BC125227|NUP160|23279|nucleoporin 160kDa##BC125228|NUP160|23279|nucleoporin 160kDa##BC009822|NUP160|23279|nucleoporin 160kDa##NM_015231|NUP160|23279|nucleoporin 160kDa##D83781|NUP160|23279|nucleoporin 160kDa##AK026236|NUP160|23279|nucleoporin 160kDa##BX647634|NUP160|23279|nucleoporin 160kDa##AK302396|NUP160|23279|nucleoporin 160kDa##AK304308|NUP160|23279|nucleoporin 160kDa##AL832029|NUP160|23279|nucleoporin 160kDa##EU832174|FNBP4|23360|formin binding protein 4##EU832267|FNBP4|23360|formin binding protein 4##AK054636|FNBP4|23360|formin binding protein 4##BC037404|FNBP4|23360|formin binding protein 4##BC006557|FNBP4|23360|formin binding protein 4##NM_015308|FNBP4|23360|formin binding protein 4##AB023231|FNBP4|23360|formin binding protein 4##NM_001098503|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_002843|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##U10886|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##D37781|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##AL359057|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##BC063417|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J	0.998861	0.983119	CTCF.p2:-42:0.983	denovo_WM_7:43:0.773
chr7	100401246	100401396	reg1008078.p1	5.943	+	AF332975 AF332976 AF332977 AF332978 AF332979 AF332980 NM_003386 NM_173059	-70073	+	NM_000799 X02157 BC093628 BC111937 BC143225 AB463610 JN849371	-82809	+	TSC_hg19_v1_chr7_+_100303755 NM_005837 BC001430 U94316	-97601	+	TSC_hg19_v1_chr7_-_100425146 NM_004444	23771	-	TSC_hg19_v1_chr7_+_100450340 AK301411	49019	+	NM_020246 BC000154 TSC_hg19_v1_chr7_+_100450361	49043	+	AF332975|ZAN|7455|zonadhesin##AF332976|ZAN|7455|zonadhesin##AF332977|ZAN|7455|zonadhesin##AF332978|ZAN|7455|zonadhesin##AF332979|ZAN|7455|zonadhesin##AF332980|ZAN|7455|zonadhesin##NM_003386|ZAN|7455|zonadhesin##NM_173059|ZAN|7455|zonadhesin##NM_000799|EPO|2056|erythropoietin##X02157|EPO|2056|erythropoietin##BC093628|EPO|2056|erythropoietin##BC111937|EPO|2056|erythropoietin##BC143225|EPO|2056|erythropoietin##JN849371|EPO|2056|erythropoietin##NM_005837|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##BC001430|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##U94316|POP7|10248|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)##NM_004444|EPHB4|2050|EPH receptor B4##AK301411|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##NM_020246|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9##BC000154|SLC12A9|56996|solute carrier family 12 (potassium/chloride transporters), member 9	0.0	0.0	
chr8	29991292	29991472	reg1004197.p1	5.943	+	TSC_hg19_v1_chr8_+_29952989 AK075363 AF161461 DQ891897 DQ895083 CR541735 CR541760	-38383	+	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	-38439	+	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	-50810	-	NM_001100916 EU518495	10818	-	D84145 NM_006571 TSC_hg19_v1_chr8_+_30013882 AK314128 BC013175 CR456851	22473	+	Z36874 TSC_hg19_v1_chr8_+_30209759	218355	+	AK075363|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF161461|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ891897|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ895083|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541735|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541760|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001100916|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##EU518495|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##D84145|DCTN6|10671|dynactin 6##NM_006571|DCTN6|10671|dynactin 6##AK314128|DCTN6|10671|dynactin 6##BC013175|DCTN6|10671|dynactin 6##CR456851|DCTN6|10671|dynactin 6	1.045856	0.0	denovo_WM_7:-67:0.309	denovo_WM_7:-68:0.309	denovo_WM_7:-69:0.309
chr6	16592033	16592205	reg1007641.p2	5.941	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-353268	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-448809	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-462682	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	169578	-	NM_001190766	510369	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	689735	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr12	122102682	122102862	reg1004710.p1	5.940	+	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-38129	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-83858	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-84513	-	BC057760 NM_173855	4787	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	47972	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	128802	-	BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)	1.987268	0.0	denovo_WM_7:12:0.310	denovo_WM_7:13:0.310	denovo_WM_7:-14:0.329	denovo_WM_7:14:0.310	denovo_WM_7:-15:0.329	denovo_WM_7:-16:0.329
chr1	55083291	55083437	reg1006533.p2	5.940	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	-69470	+	TSC_hg19_v1_chr1_+_55007956 AK091112	-75403	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-211280	-	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	5784	-	NM_001039464 BC028620 CR749830 AK302446 AK302703 BX648088 AK093272 AX748025 BC144516 AK301894	24089	+	AK025524 NM_004623 TSC_hg19_v1_chr1_+_55181537 AF063602 AK292426 AK090964 AX746706 AK222562 AF073887 BC001276 BT006817 CU674642	98173	+	NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A##NM_001039464|HEATR8|374977|HEAT repeat containing 8##BC028620|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##CR749830|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##AK302446|HEATR8|374977|HEAT repeat containing 8##AK302703|HEATR8|374977|HEAT repeat containing 8##BX648088|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##AK093272|HEATR8|374977|HEAT repeat containing 8##BC144516|HEATR8|374977|HEAT repeat containing 8##AK301894|HEATR8|374977|HEAT repeat containing 8##AK025524|TTC4|7268|tetratricopeptide repeat domain 4##NM_004623|TTC4|7268|tetratricopeptide repeat domain 4##AF063602|TTC4|7268|tetratricopeptide repeat domain 4##AK292426|TTC4|7268|tetratricopeptide repeat domain 4##AK090964|TTC4|7268|tetratricopeptide repeat domain 4##AK222562|TTC4|7268|tetratricopeptide repeat domain 4##AF073887|TTC4|7268|tetratricopeptide repeat domain 4##BC001276|TTC4|7268|tetratricopeptide repeat domain 4##BT006817|TTC4|7268|tetratricopeptide repeat domain 4	1.983532	0.0	denovo_WM_7:26:0.276	denovo_WM_7:27:0.231	denovo_WM_7:45:0.225	denovo_WM_7:46:0.270
chr1	88581512	88581647	reg1007343.p1	5.940	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-784164	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-784254	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-786898	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	568516	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	775632	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	775694	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	0.999138	0.0	
chr13	115058823	115059003	reg1008266.p2	5.939	+	TSC_hg19_v1_chr13_+_115047085 AY013250 NM_023011 NM_080687 BC023569 BC047735 AK294545 AK302003 AF318575	-11799	+	TSC_hg19_v1_chr13_+_115000402 AK296424 BC017244 BC010875 AK315302 U18291 AB590520 AF164598 CU677877	-58451	+	TSC_hg19_v1_chr13_+_115000360 NM_001078645 NM_003903	-58554	+	TSC_hg19_v1_chr13_+_115080005 NM_001164144 NM_001164145 NM_032436 AK096346 BC065237	21073	+	None	None	None	None	None	None	AY013250|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_023011|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_080687|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC023569|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC047735|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK294545|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK302003|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AF318575|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK296424|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC017244|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC010875|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AK315302|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##U18291|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AF164598|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_001078645|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_003903|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_001164144|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_001164145|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_032436|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AK096346|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##BC065237|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1	0.929144	0.0	denovo_WM_7:-47:0.624	denovo_WM_7:-48:0.305
chr3	129179193	129179373	reg1008192.p2	5.939	+	TSC_hg19_v1_chr3_+_129159160 AK298526 AK299903 CU678342 EU832629 EU832704	-20121	+	BC028353 TSC_hg19_v1_chr3_+_129159138	-20145	+	TSC_hg19_v1_chr3_+_129159089 AF302154	-20171	+	NM_000539 BX537381 BC112104 BC112106 AB464154 AM392780	68244	+	AY158091 NM_153833	82773	+	TSC_hg19_v1_chr3_-_129325518 NM_015103 AB014520 AY116661 BC150280	146156	-	AK298526|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##AK299903|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##EU832629|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##EU832704|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##BC028353|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##AF302154|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##NM_000539|RHO|6010|rhodopsin##BX537381|RHO|6010|rhodopsin##BC112104|RHO|6010|rhodopsin##BC112106|RHO|6010|rhodopsin##AM392780|RHO|6010|rhodopsin##AY158091|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_153833|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_015103|PLXND1|23129|plexin D1##AB014520|PLXND1|23129|plexin D1##AY116661|PLXND1|23129|plexin D1##BC150280|PLXND1|23129|plexin D1	0.906888	0.0	denovo_WM_7:-2:0.498
chr10	69645572	69645752	reg1007587.p2	5.938	+	AK289743 NM_001142498 TSC_hg19_v1_chr10_+_69644954	-713	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	-870	+	TSC_hg19_v1_chr10_+_69644413 AF083106 NM_012238 AF235040	-1255	+	AK027835 TSC_hg19_v1_chr10_-_69752431	106746	-	TSC_hg19_v1_chr10_-_69834956 AK292809 BC015043	189318	-	BC039600 TSC_hg19_v1_chr10_-_69835041 AK026808 AY221963 AY650032 AY650033 AY650034	189364	-	AK289743|SIRT1|23411|sirtuin 1##NM_001142498|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1##AF083106|SIRT1|23411|sirtuin 1##NM_012238|SIRT1|23411|sirtuin 1##AF235040|SIRT1|23411|sirtuin 1##AK027835|HERC4|26091|hect domain and RLD 4##AK292809|HERC4|26091|hect domain and RLD 4##BC015043|HERC4|26091|hect domain and RLD 4##BC039600|HERC4|26091|hect domain and RLD 4##AK026808|HERC4|26091|hect domain and RLD 4##AY221963|HERC4|26091|hect domain and RLD 4##AY650032|HERC4|26091|hect domain and RLD 4##AY650033|HERC4|26091|hect domain and RLD 4##AY650034|HERC4|26091|hect domain and RLD 4	0.993622	0.0	
chr12	27437837	27437995	reg1008672.p1	5.937	+	TSC_hg19_v1_chr12_+_27397225 AK304755	-40691	+	TSC_hg19_v1_chr12_+_27397187 AK291055	-40729	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	-40792	+	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	47963	+	BC043511 TSC_hg19_v1_chr12_-_27599649	161688	-	NM_001145010	181826	+	AK304755|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70	0.0	0.0	
chrX	48869345	48869462	reg1005720.p1	5.937	+	TSC_hg19_v1_chrX_-_48858674 AB032993 AB527837 AK292158 BC101544 BC101546 BX647801 BX647804 NM_020137 NM_207672	-10755	-	BC045659 NM_004979 TSC_hg19_v1_chrX_-_48828252	-41152	-	TSC_hg19_v1_chrX_-_48815644 NM_001136159	-53759	-	AB527281 EU446500 EU831602 EU831689 AK313540 BC001532 TSC_hg19_v1_chrX_-_48900884	31423	-	TSC_hg19_v1_chrX_-_48900948 AL161985 X96717 BC026027 NM_006521	31557	-	BC008769 NM_001163322 NM_033626 NM_001163321 NM_001163323 AK315837 AK294024 AK300366 AK293898	47130	+	AB032993|GRIPAP1|56850|GRIP1 associated protein 1##AK292158|GRIPAP1|56850|GRIP1 associated protein 1##BC101544|GRIPAP1|56850|GRIP1 associated protein 1##BC101546|GRIPAP1|56850|GRIP1 associated protein 1##BX647801|GRIPAP1|56850|GRIP1 associated protein 1##BX647804|GRIPAP1|56850|GRIP1 associated protein 1##NM_020137|GRIPAP1|56850|GRIP1 associated protein 1##NM_207672|GRIPAP1|56850|GRIP1 associated protein 1##BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_001136159|OTUD5|55593|OTU domain containing 5##EU446500|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831602|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831689|TFE3|7030|transcription factor binding to IGHM enhancer 3##AK313540|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC001532|TFE3|7030|transcription factor binding to IGHM enhancer 3##AL161985|TFE3|7030|transcription factor binding to IGHM enhancer 3##X96717|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC026027|TFE3|7030|transcription factor binding to IGHM enhancer 3##NM_006521|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC008769|CCDC120|90060|coiled-coil domain containing 120##NM_001163322|CCDC120|90060|coiled-coil domain containing 120##NM_033626|CCDC120|90060|coiled-coil domain containing 120##NM_001163321|CCDC120|90060|coiled-coil domain containing 120##NM_001163323|CCDC120|90060|coiled-coil domain containing 120##AK315837|CCDC120|90060|coiled-coil domain containing 120##AK294024|CCDC120|90060|coiled-coil domain containing 120##AK300366|CCDC120|90060|coiled-coil domain containing 120##AK293898|CCDC120|90060|coiled-coil domain containing 120	1.842845	0.0	denovo_WM_7:-2:0.837	denovo_WM_7:13:0.850
chr11	67887675	67887827	reg1007416.p1	5.936	+	AF025374 NM_006053	-77305	+	TSC_hg19_v1_chr11_+_67806519 U45285 AY548967	-81207	+	TSC_hg19_v1_chr11_+_67806477 NM_006019 BC018133 BC032465	-81279	+	D10704 BC036471 TSC_hg19_v1_chr11_-_67888844	1006	-	NM_001277 NM_212469 TSC_hg19_v1_chr11_-_67888859	1137	-	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	93228	-	AF025374|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##NM_006053|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##U45285|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##AY548967|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##NM_006019|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC018133|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC032465|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##D10704|CHKA|1119|choline kinase alpha##BC036471|CHKA|1119|choline kinase alpha##NM_001277|CHKA|1119|choline kinase alpha##NM_212469|CHKA|1119|choline kinase alpha##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)	0.995522	0.0	denovo_WM_7:-45:0.455	denovo_WM_7:-46:0.455
chr19	5322214	5322366	reg1007364.p2	5.935	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-289391	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-353117	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-353166	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	18504	-	AK098722 NM_181710 AK292251 BC017592	133136	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	300468	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	0.0	0.0	
chr3	64211518	64211671	reg1007721.p2	5.935	+	BC119002 AL833539 NM_198859	-474	-	AF530062 AB463196 TSC_hg19_v1_chr3_-_64009149 BC000630 AK095059 AY568086 D14663 NM_014814 BC012369 BC000904 AK290205 BX647742 AF215935	-202444	-	NM_001128149 AK310745 AK304062	-258137	+	AK057923 TSC_hg19_v1_chr3_+_64670789 BC040632	459197	+	AB037733 TSC_hg19_v1_chr3_-_64672299	460701	-	TSC_hg19_v1_chr3_-_64673334 AF261918 BC130578 BC171764 AF488803 NM_182920	461753	-	BC119002|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AL833539|PRICKLE2|166336|prickle homolog 2 (Drosophila)##NM_198859|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AF530062|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000630|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK095059|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AY568086|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##D14663|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_014814|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC012369|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000904|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK290205|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BX647742|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AF215935|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_001128149|ATXN7|6314|ataxin 7##AK310745|ATXN7|6314|ataxin 7##AK304062|ATXN7|6314|ataxin 7##AK057923|ADAMTS9-AS2|100507098|ADAMTS9 antisense RNA 2 (non-protein coding)##BC040632|ADAMTS9-AS2|100507098|ADAMTS9 antisense RNA 2 (non-protein coding)##AB037733|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##AF261918|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##BC130578|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##BC171764|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##AF488803|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9##NM_182920|ADAMTS9|56999|ADAM metallopeptidase with thrombospondin type 1 motif, 9	0.988243	0.0	denovo_WM_7:-25:0.773
chr14	74551428	74551608	reg1006963.p2	5.934	+	TSC_hg19_v1_chr14_-_74551167 BC032371 NM_005589	-329	-	AF038011 TSC_hg19_v1_chr14_-_74551122 AF159889 CU678802 DQ892921 DQ893680 EU176729 AK223244 AJ249994 BC004909 AK222687 AF148505 AK312389 AK294243 AK311478	-403	-	TSC_hg19_v1_chr14_+_74486065 NM_025057 BC044808	-65433	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	150	+	AY336059 NM_182894 BC128153	154678	+	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	218172	-	BC032371|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_005589|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF038011|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF159889|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ892921|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ893680|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##EU176729|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK223244|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AJ249994|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##BC004909|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK222687|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF148505|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK312389|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK294243|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK311478|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_025057|C14orf45|80127|chromosome 14 open reading frame 45##BC044808|C14orf45|80127|chromosome 14 open reading frame 45##NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4	0.0	0.0	
chr6	34633697	34633831	reg1006844.p1	5.934	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-109668	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-151110	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-199860	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	30782	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	30862	-	NM_003093	91106	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.994545	0.0	denovo_WM_7:-26:0.239	denovo_WM_7:-27:0.239	denovo_WM_7:-28:0.239	denovo_WM_7:-29:0.239
chr20	52543074	52543223	reg1008233.p1	5.933	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-332349	-	AF041259 NM_006526	-343513	-	AK302570 NM_001193421	-741327	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	143914	-	AK315220 NM_003657	144155	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	247372	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.186877	0.0	
chr5	31599101	31599281	reg1006900.p2	5.933	+	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	-66756	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	-66969	-	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	-405314	+	TSC_hg19_v1_chr5_+_31639424 AB002298	40279	+	NM_178140	199839	+	TSC_hg19_v1_chr5_+_32173523 AK055939	574325	+	NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III##BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AB002298|PDZD2|23037|PDZ domain containing 2##NM_178140|PDZD2|23037|PDZ domain containing 2##AK055939|LOC153546|153546|uncharacterized LOC153546	0.998499	0.0	denovo_WM_7:-31:0.457	denovo_WM_7:-32:0.457
chr10	11304819	11304986	reg1008654.p2	5.931	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-97410	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-97456	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-97477	+	NM_001080491	269371	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	348734	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	479496	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	1.809023	0.0	denovo_WM_7:4:0.884	denovo_WM_7:19:0.303	denovo_WM_7:20:0.305	denovo_WM_7:21:0.307
chr19	2148122	2148270	reg1006346.p1	5.931	+	TSC_hg19_v1_chr19_+_2096982 CU677067 DQ424900 AK294083	-51233	+	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	-51336	+	TSC_hg19_v1_chr19_-_2096297 AL832474	-51902	-	CU679595 AB384738 BC005142 TSC_hg19_v1_chr19_-_2151519	3229	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	3346	-	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	3357	-	DQ424900|IZUMO4|113177|IZUMO family member 4##AK294083|IZUMO4|113177|IZUMO family member 4##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4##AL832474|MOB3A|126308|MOB kinase activator 3A##BC005142|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit	1.748032	0.0	denovo_WM_7:-27:0.735	denovo_WM_7:-42:0.818
chr4	139590906	139591075	reg1007771.p2	5.931	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-427626	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-1137348	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-1137398	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	346003	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	414413	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	414621	-	AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.991776	0.0	denovo_WM_7:-20:0.331	denovo_WM_7:-21:0.331	denovo_WM_7:-22:0.331
chr4	52761315	52761478	reg1007989.p1	5.931	+	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	-52110	+	AK025164 NM_025087 BC137387 BC137388	-3773124	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	-3852617	-	CR749811 NM_001024611	122389	-	BT019433 CR456810 DQ893140 DQ896425 EU176433 U29586 TSC_hg19_v1_chr4_-_52904447 AK299765 BC020709 AK289892 U31116 NM_000232	143061	-	TSC_hg19_v1_chr4_+_52917480 AK304386 AK057468 BC025396 NM_145263 AK314799	156137	+	AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66##BT019433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##CR456810|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ893140|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ896425|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##EU176433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U29586|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK299765|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##BC020709|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK289892|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U31116|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##NM_000232|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK304386|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK057468|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##BC025396|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##NM_145263|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK314799|SPATA18|132671|spermatogenesis associated 18 homolog (rat)	0.990431	0.0	denovo_WM_7:-21:0.814
chr20	24935671	24935826	reg1005872.p1	5.930	+	TSC_hg19_v1_chr20_+_24929907 AF031824 BC015507 AB015225 CU677327 BT009825 AF036342 CR541860 CR541878	-5726	+	TSC_hg19_v1_chr20_+_24929865 NM_003650	-5885	+	TSC_hg19_v1_chr20_+_24450295 BC030637	-485446	+	TSC_hg19_v1_chr20_-_24973355 CU678464 BC003501	37582	-	TSC_hg19_v1_chr20_-_24973366 AB033767 AK291129	37633	-	TSC_hg19_v1_chr20_-_24973410 NM_020531 AK301959	37739	-	AF031824|CST7|8530|cystatin F (leukocystatin)##BC015507|CST7|8530|cystatin F (leukocystatin)##AB015225|CST7|8530|cystatin F (leukocystatin)##BT009825|CST7|8530|cystatin F (leukocystatin)##AF036342|CST7|8530|cystatin F (leukocystatin)##CR541860|CST7|8530|cystatin F (leukocystatin)##CR541878|CST7|8530|cystatin F (leukocystatin)##NM_003650|CST7|8530|cystatin F (leukocystatin)##BC030637|SYNDIG1|79953|synapse differentiation inducing 1##BC003501|C20orf3|57136|chromosome 20 open reading frame 3##AB033767|C20orf3|57136|chromosome 20 open reading frame 3##AK291129|C20orf3|57136|chromosome 20 open reading frame 3##NM_020531|C20orf3|57136|chromosome 20 open reading frame 3##AK301959|C20orf3|57136|chromosome 20 open reading frame 3	0.229947	0.0	denovo_WM_7:-54:0.230
chr6	118872380	118872508	reg1007848.p1	5.930	+	NM_002667 M63603 AK311799 BC005269	-2979	+	BC028615 NM_001029858 BC114925	-643754	+	TSC_hg19_v1_chr6_+_117996664 AK126335 BC013026	-875778	+	BC048977 BC052778 NM_001042475 NM_206921 BC036553	100592	-	BC110835 BC064835 NM_001178035	158789	-	NM_014034 AK025738 AL050261 BC010878 AB028628 AF279306 CU679835 CR457347	342964	+	NM_002667|PLN|5350|phospholamban##M63603|PLN|5350|phospholamban##AK311799|PLN|5350|phospholamban##BC005269|PLN|5350|phospholamban##BC028615|SLC35F1|222553|solute carrier family 35, member F1##NM_001029858|SLC35F1|222553|solute carrier family 35, member F1##BC114925|SLC35F1|222553|solute carrier family 35, member F1##AK126335|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC013026|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC048977|CEP85L|387119|centrosomal protein 85kDa-like##BC052778|CEP85L|387119|centrosomal protein 85kDa-like##NM_001042475|CEP85L|387119|centrosomal protein 85kDa-like##NM_206921|CEP85L|387119|centrosomal protein 85kDa-like##BC036553|CEP85L|387119|centrosomal protein 85kDa-like##BC110835|CEP85L|387119|centrosomal protein 85kDa-like##BC064835|CEP85L|387119|centrosomal protein 85kDa-like##NM_001178035|CEP85L|387119|centrosomal protein 85kDa-like##NM_014034|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AK025738|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AL050261|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##BC010878|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AB028628|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##AF279306|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)##CR457347|ASF1A|25842|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	0.0	0.0	
chr9	91092337	91092513	reg1008085.p2	5.930	+	TSC_hg19_v1_chr9_+_91003988 AK315854	-88427	+	TSC_hg19_v1_chr9_+_91003366 NM_006717 BC013571 AL136719 AK092017 AX747313 AF087864 AF106682 AK290009	-89092	+	AK302448 NM_001166137	-342526	-	NM_001161625 NM_145283 BC022521	57592	+	BC101432 BC101439 BC101440 BC101442 AK098532 NM_001100111	174614	-	AK094842 NM_001001938 NM_001142413 AK127854 BC144432 BC136895 AY333281	513418	+	AK315854|SPIN1|10927|spindlin 1##NM_006717|SPIN1|10927|spindlin 1##BC013571|SPIN1|10927|spindlin 1##AL136719|SPIN1|10927|spindlin 1##AK092017|SPIN1|10927|spindlin 1##AF087864|SPIN1|10927|spindlin 1##AF106682|SPIN1|10927|spindlin 1##AK290009|SPIN1|10927|spindlin 1##AK302448|FAM75C2|645961|family with sequence similarity 75, member C2##NM_001166137|FAM75C2|645961|family with sequence similarity 75, member C2##NM_001161625|NXNL2|158046|nucleoredoxin-like 2##NM_145283|NXNL2|158046|nucleoredoxin-like 2##BC022521|NXNL2|158046|nucleoredoxin-like 2##BC101432|LOC286238|286238|uncharacterized LOC286238##BC101439|LOC286238|286238|uncharacterized LOC286238##BC101440|LOC286238|286238|uncharacterized LOC286238##BC101442|LOC286238|286238|uncharacterized LOC286238##AK098532|LOC286238|286238|uncharacterized LOC286238##NM_001100111|LOC286238|286238|uncharacterized LOC286238##AK094842|C9orf47|286223|chromosome 9 open reading frame 47##NM_001001938|C9orf47|286223|chromosome 9 open reading frame 47##NM_001142413|C9orf47|286223|chromosome 9 open reading frame 47##AK127854|C9orf47|286223|chromosome 9 open reading frame 47##BC144432|C9orf47|286223|chromosome 9 open reading frame 47##BC136895|C9orf47|286223|chromosome 9 open reading frame 47##AY333281|C9orf47|286223|chromosome 9 open reading frame 47	0.915775	0.0	denovo_WM_7:34:0.220	denovo_WM_7:35:0.670
chr19	38917851	38918014	reg1001457.p1	5.929	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-1060	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-24031	+	TSC_hg19_v1_chr19_+_38893817 BC100033	-24119	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	6412	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	190656	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	191781	+	AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##BC100033|FAM98C|147965|family with sequence similarity 98, member C##NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	1.011076	0.0	denovo_WM_7:87:0.408
chr12	15842006	15842124	reg1006942.p2	5.928	+	TSC_hg19_v1_chr12_-_15815073 AK316134	-26925	-	TSC_hg19_v1_chr12_+_15699551 AK290982	-142488	+	NM_030668 NM_030669 NM_030670 NM_030671 AF152378 AF187042 AF187043 AF187044	-142784	+	TSC_hg19_v1_chr12_-_15865848 AK292931	23799	-	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	100167	-	TSC_hg19_v1_chr12_-_15942350 AK304860 NM_004447	100364	-	AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030668|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030669|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030670|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030671|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF152378|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187042|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187043|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187044|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK304860|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_004447|EPS8|2059|epidermal growth factor receptor pathway substrate 8	0.590554	0.0	denovo_WM_7:10:0.563
chr5	115910797	115910925	reg1004048.p2	5.928	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-347	-	TSC_hg19_v1_chr5_+_115898220 D28352	-12637	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-490140	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2413377	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2495950	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2496304	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.283072	0.0	denovo_WM_7:2:0.244	denovo_WM_7:-3:0.575	denovo_WM_7:51:0.204
chr12	6832945	6833125	reg1007682.p1	5.926	+	AK056295 NM_001244014 NM_153685	-23049	-	AK095854 NM_001244015	-23440	-	BC053361 AK298962 TSC_hg19_v1_chr12_-_6798677 NM_001039920 NM_001135734	-34357	-	NM_001164094 TSC_hg19_v1_chr12_+_6833211 NM_016319 AK128792 BC093015 AK021721 AF210052 NM_001164095	166	+	AK001318 AK022488 TSC_hg19_v1_chr12_+_6833275	238	+	BC011789 TSC_hg19_v1_chr12_+_6833295 AB033603	286	+	AK056295|C12orf53|196500|chromosome 12 open reading frame 53##NM_001244014|C12orf53|196500|chromosome 12 open reading frame 53##NM_153685|C12orf53|196500|chromosome 12 open reading frame 53##AK095854|C12orf53|196500|chromosome 12 open reading frame 53##NM_001244015|C12orf53|196500|chromosome 12 open reading frame 53##BC053361|ZNF384|171017|zinc finger protein 384##AK298962|ZNF384|171017|zinc finger protein 384##NM_001039920|ZNF384|171017|zinc finger protein 384##NM_001135734|ZNF384|171017|zinc finger protein 384##NM_001164094|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##NM_016319|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##AK128792|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##BC093015|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##AK021721|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##AF210052|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##NM_001164095|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##AK001318|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##AK022488|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##BC011789|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)##AB033603|COPS7A|50813|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)	0.0	0.0	
chr3	67050642	67050782	reg1007367.p1	5.925	+	NM_032505 AK096640 AK300397	-1984	+	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	-499248	-	AF381545 BC140907 NM_015541 AY730707	-499860	-	BC007716 BC047024 TSC_hg19_v1_chr3_-_67705027 AK294598 AK310527 BC068602 NM_001177599 NM_003848	654350	-	BC038210 TSC_hg19_v1_chr3_+_67705138 AL832184	654438	+	AY325114 NM_001252216	990021	+	NM_032505|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK096640|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK300397|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC007716|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##BC047024|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AK294598|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AK310527|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##BC068602|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##NM_001177599|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##NM_003848|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AY325114|FAM19A1|407738|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1##NM_001252216|FAM19A1|407738|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	0.618575	0.0	denovo_WM_7:11:0.518
chr7	77570059	77570198	reg1006770.p1	5.925	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	-100619	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	-141918	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	-141987	+	AB014605 BC150277 AK297353 AF038563 NM_012301	1512751	-	TSC_hg19_v1_chr7_+_79083303 AK311103	1513029	+	TSC_hg19_v1_chr7_+_79764166 NM_002069 BC026326 AL049933 AK292953	2194011	+	BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##AB014605|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##BC150277|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK297353|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AF038563|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##NM_012301|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK311103|MAGI2-AS3|100505881|MAGI2 antisense RNA 3 (non-protein coding)##NM_002069|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##BC026326|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AL049933|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AK292953|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	0.067108	0.806025	CTCF.p2:15:0.806
chr3	178684439	178684573	reg1007254.p1	5.924	+	AF209747 NM_005832	-407954	+	BC017825 NM_181361	-430283	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-1769447	-	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	105059	-	TSC_hg19_v1_chr3_-_178789598 NM_022470 NM_152240	105120	-	TSC_hg19_v1_chr3_+_178866144 NM_006218 AK292940	181732	+	AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3##NM_022470|ZMAT3|64393|zinc finger, matrin-type 3##NM_152240|ZMAT3|64393|zinc finger, matrin-type 3##NM_006218|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##AK292940|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide	0.659235	0.078495	denovo_WM_7:-8:0.482
chr7	22005985	22006129	reg1007630.p1	5.924	+	AB463479 AY161168 AY161169 CU691768 CU692942 BC009352 TSC_hg19_v1_chr7_-_21985500 AK095965 BC025242 BC032576 AK300781 BC039823 AK022955 AK292490 NM_001127370 NM_001127371 NM_018719	-20575	-	AJ320497 NM_003777	-423225	+	AB591008 TSC_hg19_v1_chr7_+_21468356	-537733	+	AL833195 NM_012294	390464	-	BC066301 TSC_hg19_v1_chr7_-_22539806 AK308991 NM_001164460 NM_207342	533790	-	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	760766	+	AY161168|CDCA7L|55536|cell division cycle associated 7-like##AY161169|CDCA7L|55536|cell division cycle associated 7-like##BC009352|CDCA7L|55536|cell division cycle associated 7-like##AK095965|CDCA7L|55536|cell division cycle associated 7-like##BC025242|CDCA7L|55536|cell division cycle associated 7-like##BC032576|CDCA7L|55536|cell division cycle associated 7-like##AK300781|CDCA7L|55536|cell division cycle associated 7-like##BC039823|CDCA7L|55536|cell division cycle associated 7-like##AK022955|CDCA7L|55536|cell division cycle associated 7-like##AK292490|CDCA7L|55536|cell division cycle associated 7-like##NM_001127370|CDCA7L|55536|cell division cycle associated 7-like##NM_001127371|CDCA7L|55536|cell division cycle associated 7-like##NM_018719|CDCA7L|55536|cell division cycle associated 7-like##AJ320497|DNAH11|8701|dynein, axonemal, heavy chain 11##NM_003777|DNAH11|8701|dynein, axonemal, heavy chain 11##AL833195|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##NM_012294|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##BC066301|STEAP1B|256227|STEAP family member 1B##AK308991|STEAP1B|256227|STEAP family member 1B##NM_001164460|STEAP1B|256227|STEAP family member 1B##NM_207342|STEAP1B|256227|STEAP family member 1B##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)	0.0	0.0	
chr15	77280807	77280970	reg1002302.p2	5.923	+	TSC_hg19_v1_chr15_+_77224095 NM_002902 AK313833 X78669 BC004892 BT009790 CU678788	-56816	+	AB040887 TSC_hg19_v1_chr15_-_77197781 AK056095	-83117	-	TSC_hg19_v1_chr15_-_77197682 BC070197 BC107415 AK056515	-83224	-	TSC_hg19_v1_chr15_+_77287465 AK309856 NM_003978 AK310126 BC008602	6602	+	AK304052 U94778 AK316220 TSC_hg19_v1_chr15_+_77287720 AK298733	6818	+	TSC_hg19_v1_chr15_+_77287743 AK310072 AB451310 AB451440 AF038602 AF038603 DQ891779 DQ894963 AB528365	6939	+	NM_002902|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AK313833|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##X78669|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BC004892|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BT009790|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AB040887|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056095|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC070197|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC107415|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056515|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK309856|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##NM_003978|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310126|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##BC008602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK304052|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##U94778|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK316220|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK298733|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310072|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451310|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451440|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038603|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ891779|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ894963|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1	0.0	0.0	
chr18	13576973	13577153	reg1007035.p1	5.923	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-358278	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-585718	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-628999	+	NM_001003674 NM_001003675	34601	+	AF009426 AF009427 NM_004338 NM_181483	43803	+	TSC_hg19_v1_chr18_-_13726549 AK055618	149443	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.667148	0.0	denovo_WM_7:-2:0.667
chr18	39527686	39527823	reg1008435.p2	5.923	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2147486	-	TSC_hg19_v1_chr18_-_36915657 D28405	-2612098	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-4381755	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	7445	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	7479	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1167815	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.979677	0.0	denovo_WM_7:59:0.407	denovo_WM_7:60:0.363
chr2	7571149	7571297	reg1009933.p1	5.922	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-513636	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-553360	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-564520	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1250980	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1406496	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	1572598	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr9	80597600	80597780	reg1006244.p1	5.922	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-334459	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-629342	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-805182	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	48494	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	253340	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	314368	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.999733	0.0	denovo_WM_7:-29:0.230	denovo_WM_7:-30:0.230	denovo_WM_7:-31:0.230	denovo_WM_7:-32:0.230
chr22	17749399	17749544	reg1008103.p2	5.921	+	TSC_hg19_v1_chr22_-_17747522 AF277398	-1900	-	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-49108	-	AF190746 NM_017424	-58693	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	293748	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	361974	-	TSC_hg19_v1_chr22_-_18111509 AK312394	362035	-	AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##AK312394|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.982717	0.491464	denovo_WM_7:-20:0.484	CTCF.p2:45:0.491
chr3	48966210	48966342	reg1010294.p1	5.921	+	AK097724 NM_001123040	-9459	-	TSC_hg19_v1_chr3_+_48956280 NM_006321 BC000422	-9993	+	TSC_hg19_v1_chr3_+_48956261 AK223550	-10020	+	TSC_hg19_v1_chr3_+_49027682 BC047566 NM_177938 NM_177939 AL713728 BC011710 AY198406 BC018731	61225	+	BC060321 TSC_hg19_v1_chr3_+_49027877 CU680020 AK000269	61584	+	AK295145 NM_018031 TSC_hg19_v1_chr3_+_49044739	78340	+	AK097724|C3orf71|646450|chromosome 3 open reading frame 71##NM_001123040|C3orf71|646450|chromosome 3 open reading frame 71##NM_006321|ARIH2|10425|ariadne homolog 2 (Drosophila)##BC000422|ARIH2|10425|ariadne homolog 2 (Drosophila)##AK223550|ARIH2|10425|ariadne homolog 2 (Drosophila)##BC047566|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##NM_177938|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##NM_177939|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AL713728|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC011710|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AY198406|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC018731|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##BC060321|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AK000269|P4HTM|54681|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)##AK295145|WDR6|11180|WD repeat domain 6##NM_018031|WDR6|11180|WD repeat domain 6	1.876322	0.0	denovo_WM_7:-7:0.218	denovo_WM_7:-8:0.402	denovo_WM_7:-104:0.438	denovo_WM_7:-105:0.517
chr1	178575210	178575390	reg1003231.p2	5.920	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	-93034	+	AF047711 NM_004841 AK290308	-264666	+	BC110611 TSC_hg19_v1_chr1_+_178063651	-511659	+	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	119073	+	AK223467 BC050640 AB056476 TSC_hg19_v1_chr1_-_178840178 AY358278 NM_004673	264846	-	TSC_hg19_v1_chr1_+_178995028 AB007944	419720	+	AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##AF047711|RASAL2|9462|RAS protein activator like 2##NM_004841|RASAL2|9462|RAS protein activator like 2##AK290308|RASAL2|9462|RAS protein activator like 2##BC110611|RASAL2|9462|RAS protein activator like 2##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK223467|ANGPTL1|9068|angiopoietin-like 1##BC050640|ANGPTL1|9068|angiopoietin-like 1##AB056476|ANGPTL1|9068|angiopoietin-like 1##AY358278|ANGPTL1|9068|angiopoietin-like 1##NM_004673|ANGPTL1|9068|angiopoietin-like 1##AB007944|FAM20B|9917|family with sequence similarity 20, member B	0.0	0.0	
chr9	126960269	126960410	reg1005442.p2	5.920	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-186268	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-186456	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-268028	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	59671	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	59906	+	TSC_hg19_v1_chr9_+_127020255 AB026289	59925	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.990525	0.0	denovo_WM_7:40:0.228	denovo_WM_7:41:0.228	denovo_WM_7:42:0.228	denovo_WM_7:43:0.228
chr1	162609711	162609862	reg1008484.p1	5.919	+	AK225063 TSC_hg19_v1_chr1_+_162602308	-7475	+	TSC_hg19_v1_chr1_+_162602235 NM_001014796 NM_006182 AK095975 AK225196 X74764 BX640899 BC052998 AK314388	-7540	+	TSC_hg19_v1_chr1_+_162531349 AK312685 S73498	-78413	+	AK022929 AF145023 NM_016371 BC065246 AK290741 BC007068 AJ249179 AF098786 AY358962 BT007075 CU675533 CU688024 GQ129366 GQ129367	150754	+	BC040018 AK123573 NM_178550	228791	-	NM_001102445	428609	+	AK225063|DDR2|4921|discoidin domain receptor tyrosine kinase 2##NM_001014796|DDR2|4921|discoidin domain receptor tyrosine kinase 2##NM_006182|DDR2|4921|discoidin domain receptor tyrosine kinase 2##AK095975|DDR2|4921|discoidin domain receptor tyrosine kinase 2##AK225196|DDR2|4921|discoidin domain receptor tyrosine kinase 2##X74764|DDR2|4921|discoidin domain receptor tyrosine kinase 2##BX640899|DDR2|4921|discoidin domain receptor tyrosine kinase 2##BC052998|DDR2|4921|discoidin domain receptor tyrosine kinase 2##AK314388|DDR2|4921|discoidin domain receptor tyrosine kinase 2##AK312685|UAP1|6675|UDP-N-acteylglucosamine pyrophosphorylase 1##S73498|UAP1|6675|UDP-N-acteylglucosamine pyrophosphorylase 1##AK022929|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##AF145023|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##NM_016371|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##BC065246|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##AK290741|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##BC007068|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##AJ249179|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##AF098786|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##AY358962|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##BT007075|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##GQ129366|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##GQ129367|HSD17B7|51478|hydroxysteroid (17-beta) dehydrogenase 7##BC040018|C1orf110|339512|chromosome 1 open reading frame 110##AK123573|C1orf110|339512|chromosome 1 open reading frame 110##NM_178550|C1orf110|339512|chromosome 1 open reading frame 110##NM_001102445|RGS4|5999|regulator of G-protein signaling 4	0.997164	0.0	denovo_WM_7:56:0.976
chr14	56666970	56667105	reg1008385.p1	5.919	+	TSC_hg19_v1_chr14_+_56585163 AF302502	-81863	+	TSC_hg19_v1_chr14_+_56585131 BC009476 NM_021255 AK315727	-82043	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	-588288	+	TSC_hg19_v1_chr14_+_57046539 AK056291 NM_017799 BC045556 AK293099 AK295989 AK309920 BC008949 BC023579 BC121163 BC121164	379508	+	NM_172337 AB593056	605326	-	AK314271 BC032579 NM_021728 AB593058	610107	-	AF302502|PELI2|57161|pellino homolog 2 (Drosophila)##BC009476|PELI2|57161|pellino homolog 2 (Drosophila)##NM_021255|PELI2|57161|pellino homolog 2 (Drosophila)##AK315727|PELI2|57161|pellino homolog 2 (Drosophila)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)##AK056291|C14orf101|54916|chromosome 14 open reading frame 101##NM_017799|C14orf101|54916|chromosome 14 open reading frame 101##BC045556|C14orf101|54916|chromosome 14 open reading frame 101##AK293099|C14orf101|54916|chromosome 14 open reading frame 101##AK295989|C14orf101|54916|chromosome 14 open reading frame 101##AK309920|C14orf101|54916|chromosome 14 open reading frame 101##BC008949|C14orf101|54916|chromosome 14 open reading frame 101##BC023579|C14orf101|54916|chromosome 14 open reading frame 101##BC121163|C14orf101|54916|chromosome 14 open reading frame 101##BC121164|C14orf101|54916|chromosome 14 open reading frame 101##NM_172337|OTX2|5015|orthodenticle homeobox 2##AB593056|OTX2|5015|orthodenticle homeobox 2##AK314271|OTX2|5015|orthodenticle homeobox 2##BC032579|OTX2|5015|orthodenticle homeobox 2##NM_021728|OTX2|5015|orthodenticle homeobox 2##AB593058|OTX2|5015|orthodenticle homeobox 2	0.199077	0.0	
chr16	89518788	89518968	reg1008480.p1	5.919	+	AK293862 NM_001242885	-131338	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-167922	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-168804	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	38053	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	55936	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	108187	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.856455	0.0	denovo_WM_7:31:0.856
chr7	130126904	130127009	reg1007432.p2	5.919	+	TSC_hg19_v1_chr7_+_130126173 AK098397 NM_177524 CR627364 BC090049	-840	+	BC056162 AK314676 TSC_hg19_v1_chr7_-_130080886 BC018789 AK026098 AJ278890 NM_018718 AK298618 AK311382 AF429308 AF429309	-46079	-	NM_001868 AK131054 AK291493 AK293366 BC005279 X67318 CU675077 DQ890565 DQ893728 BT007313	-106631	+	NM_177525	4216	+	TSC_hg19_v1_chr7_+_130131926 D87367 BC011908 D78611 Y11534 BC002413 BC014564 BC018695 NM_002402 AK298984 AK312688	5010	+	TSC_hg19_v1_chr7_+_130132096 AB590216 DQ890762 DQ892764 DQ893925 DQ896009 CU680110 BT007056 CR457040	5168	+	AK098397|MEST|4232|mesoderm specific transcript homolog (mouse)##NM_177524|MEST|4232|mesoderm specific transcript homolog (mouse)##CR627364|MEST|4232|mesoderm specific transcript homolog (mouse)##BC090049|MEST|4232|mesoderm specific transcript homolog (mouse)##BC056162|CEP41|95681|centrosomal protein 41kDa##AK314676|CEP41|95681|centrosomal protein 41kDa##BC018789|CEP41|95681|centrosomal protein 41kDa##AK026098|CEP41|95681|centrosomal protein 41kDa##AJ278890|CEP41|95681|centrosomal protein 41kDa##NM_018718|CEP41|95681|centrosomal protein 41kDa##AK298618|CEP41|95681|centrosomal protein 41kDa##AK311382|CEP41|95681|centrosomal protein 41kDa##AF429308|CEP41|95681|centrosomal protein 41kDa##AF429309|CEP41|95681|centrosomal protein 41kDa##NM_001868|CPA1|1357|carboxypeptidase A1 (pancreatic)##AK131054|CPA1|1357|carboxypeptidase A1 (pancreatic)##AK291493|CPA1|1357|carboxypeptidase A1 (pancreatic)##AK293366|CPA1|1357|carboxypeptidase A1 (pancreatic)##BC005279|CPA1|1357|carboxypeptidase A1 (pancreatic)##X67318|CPA1|1357|carboxypeptidase A1 (pancreatic)##DQ890565|CPA1|1357|carboxypeptidase A1 (pancreatic)##DQ893728|CPA1|1357|carboxypeptidase A1 (pancreatic)##BT007313|CPA1|1357|carboxypeptidase A1 (pancreatic)##NM_177525|MEST|4232|mesoderm specific transcript homolog (mouse)##D87367|MEST|4232|mesoderm specific transcript homolog (mouse)##BC011908|MEST|4232|mesoderm specific transcript homolog (mouse)##D78611|MEST|4232|mesoderm specific transcript homolog (mouse)##Y11534|MEST|4232|mesoderm specific transcript homolog (mouse)##BC002413|MEST|4232|mesoderm specific transcript homolog (mouse)##BC014564|MEST|4232|mesoderm specific transcript homolog (mouse)##BC018695|MEST|4232|mesoderm specific transcript homolog (mouse)##NM_002402|MEST|4232|mesoderm specific transcript homolog (mouse)##AK298984|MEST|4232|mesoderm specific transcript homolog (mouse)##AK312688|MEST|4232|mesoderm specific transcript homolog (mouse)##DQ890762|MEST|4232|mesoderm specific transcript homolog (mouse)##DQ892764|MEST|4232|mesoderm specific transcript homolog (mouse)##DQ893925|MEST|4232|mesoderm specific transcript homolog (mouse)##DQ896009|MEST|4232|mesoderm specific transcript homolog (mouse)##BT007056|MEST|4232|mesoderm specific transcript homolog (mouse)##CR457040|MEST|4232|mesoderm specific transcript homolog (mouse)	0.987901	0.0	denovo_WM_7:-8:0.712	denovo_WM_7:-9:0.276
chr17	4965862	4965983	reg1007500.p2	5.918	+	AB362534 AK023570 AB362533 BC060810 NM_001104577 NM_017986	-27210	-	TSC_hg19_v1_chr17_+_4901226 NM_006612 AB014606 BC034993 AK307401	-64612	+	AY601906 AY601907 NM_001167985 NM_001167986 NM_001167987 NM_213726	-65018	-	TSC_hg19_v1_chr17_+_4981751 AK055288 NM_153018	15815	+	TSC_hg19_v1_chr17_+_4981774 AK290549 BC142962 BX647638	15863	+	NM_014519 AK316369 TSC_hg19_v1_chr17_-_5026412	60482	-	AB362534|GPR172B|55065|G protein-coupled receptor 172B##AK023570|GPR172B|55065|G protein-coupled receptor 172B##AB362533|GPR172B|55065|G protein-coupled receptor 172B##BC060810|GPR172B|55065|G protein-coupled receptor 172B##NM_001104577|GPR172B|55065|G protein-coupled receptor 172B##NM_017986|GPR172B|55065|G protein-coupled receptor 172B##NM_006612|KIF1C|10749|kinesin family member 1C##AB014606|KIF1C|10749|kinesin family member 1C##BC034993|KIF1C|10749|kinesin family member 1C##AK307401|KIF1C|10749|kinesin family member 1C##AY601906|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AY601907|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167985|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167986|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167987|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_213726|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AK055288|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_153018|ZFP3|124961|zinc finger protein 3 homolog (mouse)##AK290549|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BC142962|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BX647638|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_014519|ZNF232|7775|zinc finger protein 232##AK316369|ZNF232|7775|zinc finger protein 232	0.985294	0.055968	denovo_WM_7:49:0.963
chr5	32276844	32276964	reg1006296.p2	5.917	+	TSC_hg19_v1_chr5_-_32174429 BC033725 AK057544 AK075156 NM_022130	-102473	-	TSC_hg19_v1_chr5_-_32174396 AK092604	-102514	-	TSC_hg19_v1_chr5_-_32174383 AK301588 BC012123 AK293368	-102535	-	AB385495 CU691208 TSC_hg19_v1_chr5_-_32313046 BC057393 AB051469 AY028703	36101	-	TSC_hg19_v1_chr5_-_32313095 AK000483 NM_001040446	36229	-	TSC_hg19_v1_chr5_-_32388605 AK295297	111716	-	BC033725|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK057544|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK075156|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##NM_022130|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK092604|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK301588|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##BC012123|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK293368|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##BC057393|MTMR12|54545|myotubularin related protein 12##AB051469|MTMR12|54545|myotubularin related protein 12##AY028703|MTMR12|54545|myotubularin related protein 12##AK000483|MTMR12|54545|myotubularin related protein 12##NM_001040446|MTMR12|54545|myotubularin related protein 12##AK295297|ZFR|51663|zinc finger RNA binding protein	1.995246	0.0	denovo_WM_7:83:0.561	denovo_WM_7:84:0.281	denovo_WM_7:98:0.332	denovo_WM_7:99:0.612
chr10	13141265	13141359	reg1005998.p1	5.915	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	-97613	-	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-749535	+	TSC_hg19_v1_chr10_+_12391709 BC035745	-749595	+	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	833	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	62256	+	BC018068 NM_145314	135015	-	AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10##BC018068|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_145314|UCMA|221044|upper zone of growth plate and cartilage matrix associated	0.896985	0.075237	denovo_WM_7:31:0.294	denovo_WM_7:34:0.252
chr12	113854230	113854383	reg1005709.p1	5.915	+	J05037 TSC_hg19_v1_chr12_-_113841693 AK292760 BC020750 NM_006843	-12632	-	TSC_hg19_v1_chr12_+_113796394 BC030618	-57920	+	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	-57935	+	TSC_hg19_v1_chr12_+_113860217 BC009849 NM_138432 BC091479 AF134473	5891	+	AF291181 NM_022363	55570	-	CU678656 EU831458 EU831545 AB385372 AB014582 BC004289 BC006137 AL117547 TSC_hg19_v1_chr12_-_114404131 AK291444 AK314606 NM_001146698 NM_001146699 NM_016196	549798	-	J05037|SDS|10993|serine dehydratase##AK292760|SDS|10993|serine dehydratase##BC020750|SDS|10993|serine dehydratase##NM_006843|SDS|10993|serine dehydratase##BC030618|PLBD2|196463|phospholipase B domain containing 2##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2##BC009849|SDSL|113675|serine dehydratase-like##NM_138432|SDSL|113675|serine dehydratase-like##BC091479|SDSL|113675|serine dehydratase-like##AF134473|SDSL|113675|serine dehydratase-like##AF291181|LHX5|64211|LIM homeobox 5##NM_022363|LHX5|64211|LIM homeobox 5##EU831458|RBM19|9904|RNA binding motif protein 19##EU831545|RBM19|9904|RNA binding motif protein 19##AB014582|RBM19|9904|RNA binding motif protein 19##BC004289|RBM19|9904|RNA binding motif protein 19##BC006137|RBM19|9904|RNA binding motif protein 19##AL117547|RBM19|9904|RNA binding motif protein 19##AK291444|RBM19|9904|RNA binding motif protein 19##AK314606|RBM19|9904|RNA binding motif protein 19##NM_001146698|RBM19|9904|RNA binding motif protein 19##NM_001146699|RBM19|9904|RNA binding motif protein 19##NM_016196|RBM19|9904|RNA binding motif protein 19	0.998968	0.0	denovo_WM_7:12:0.310	denovo_WM_7:13:0.310	denovo_WM_7:14:0.310
chr12	12576322	12576495	reg1006159.p1	5.915	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-66243	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-73236	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-156566	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	138992	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	188387	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	188475	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	2.959161	0.0	denovo_WM_7:-14:0.721	denovo_WM_7:-29:0.746	denovo_WM_7:82:0.752
chr18	2960432	2960578	reg1007111.p1	5.915	+	AB026706 TSC_hg19_v1_chr18_+_2907037	-53504	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	-113474	+	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	-304591	+	BC152448 D87436 NM_014646	51439	-	BC116183 BC116184 TSC_hg19_v1_chr18_-_3219875	259355	-	TSC_hg19_v1_chr18_-_3219987 AJ621424 AK125322 NM_003803 NM_019856	259540	-	AB026706|EMILIN2|84034|elastin microfibril interfacer 2##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##BC152448|LPIN2|9663|lipin 2##D87436|LPIN2|9663|lipin 2##NM_014646|LPIN2|9663|lipin 2##BC116183|MYOM1|8736|myomesin 1, 185kDa##BC116184|MYOM1|8736|myomesin 1, 185kDa##AJ621424|MYOM1|8736|myomesin 1, 185kDa##AK125322|MYOM1|8736|myomesin 1, 185kDa##NM_003803|MYOM1|8736|myomesin 1, 185kDa##NM_019856|MYOM1|8736|myomesin 1, 185kDa	0.990451	0.0	denovo_WM_7:14:0.814
chr19	16230959	16231138	reg1000655.p5	5.915	+	AK293676 TSC_hg19_v1_chr19_+_16222706 X56741 AF498943 BT007184 CR536583 CR542274 DQ892523 DQ895735 AB209767	-8326	+	TSC_hg19_v1_chr19_+_16222683 BC002977	-8432	+	TSC_hg19_v1_chr19_+_16222463 AK025165 NM_005370	-8574	+	TSC_hg19_v1_chr19_-_16243033 AY927516	12014	-	AY319652 NM_032855	13789	+	TSC_hg19_v1_chr19_-_16250705 AK095221	19656	-	AK293676|RAB8A|4218|RAB8A, member RAS oncogene family##X56741|RAB8A|4218|RAB8A, member RAS oncogene family##AF498943|RAB8A|4218|RAB8A, member RAS oncogene family##BT007184|RAB8A|4218|RAB8A, member RAS oncogene family##CR536583|RAB8A|4218|RAB8A, member RAS oncogene family##CR542274|RAB8A|4218|RAB8A, member RAS oncogene family##DQ892523|RAB8A|4218|RAB8A, member RAS oncogene family##DQ895735|RAB8A|4218|RAB8A, member RAS oncogene family##AB209767|RAB8A|4218|RAB8A, member RAS oncogene family##BC002977|RAB8A|4218|RAB8A, member RAS oncogene family##AK025165|RAB8A|4218|RAB8A, member RAS oncogene family##NM_005370|RAB8A|4218|RAB8A, member RAS oncogene family##AY319652|HSH2D|84941|hematopoietic SH2 domain containing##NM_032855|HSH2D|84941|hematopoietic SH2 domain containing	0.99502	0.0	
chr1	202536458	202536602	reg1007567.p1	5.914	+	AB588820 NM_001197131 TSC_hg19_v1_chr1_+_202509319	-27250	+	AB050641 AB050642 NM_032103 NM_032104	-104660	+	TSC_hg19_v1_chr1_+_202317826 AK307591 NM_001167857 NM_001167858 NM_002481 AB003062 AF324888 BC144699 BC110907 BC034430 BC071166	-218657	+	AK094430 NM_001136504	76050	-	BC100814 BC100815 BC100816 BC100817 AK090672 NM_177402 TSC_hg19_v1_chr1_-_202679575	142969	-	TSC_hg19_v1_chr1_-_202776401 AK122752	239914	-	AB588820|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001197131|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB050641|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB050642|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_032103|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_032104|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AK307591|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167857|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167858|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_002481|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB003062|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF324888|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC144699|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC110907|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC034430|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC071166|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AK094430|SYT2|127833|synaptotagmin II##NM_001136504|SYT2|127833|synaptotagmin II##BC100814|SYT2|127833|synaptotagmin II##BC100815|SYT2|127833|synaptotagmin II##BC100816|SYT2|127833|synaptotagmin II##BC100817|SYT2|127833|synaptotagmin II##AK090672|SYT2|127833|synaptotagmin II##NM_177402|SYT2|127833|synaptotagmin II##AK122752|KDM5B|10765|lysine (K)-specific demethylase 5B	0.994729	0.0	denovo_WM_7:-14:0.928
chr3	45082321	45082477	reg1007453.p1	5.914	+	AK312093 NM_003278 X64559 TSC_hg19_v1_chr3_+_45067794 BC011024 CU679874 CR541981 CR542009	-14597	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	-64639	+	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	-64662	+	AB527383 CU676820 TSC_hg19_v1_chr3_-_45187791	105387	-	TSC_hg19_v1_chr3_-_45187849 AY375452 AY026461	105452	-	TSC_hg19_v1_chr3_-_45187871 BC069254 AY167484 AY358779 AK314441 AF468010 AK026622	105476	-	AK312093|CLEC3B|7123|C-type lectin domain family 3, member B##NM_003278|CLEC3B|7123|C-type lectin domain family 3, member B##X64559|CLEC3B|7123|C-type lectin domain family 3, member B##BC011024|CLEC3B|7123|C-type lectin domain family 3, member B##CR541981|CLEC3B|7123|C-type lectin domain family 3, member B##CR542009|CLEC3B|7123|C-type lectin domain family 3, member B##BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##AY375452|CDCP1|64866|CUB domain containing protein 1##AY026461|CDCP1|64866|CUB domain containing protein 1##BC069254|CDCP1|64866|CUB domain containing protein 1##AY167484|CDCP1|64866|CUB domain containing protein 1##AY358779|CDCP1|64866|CUB domain containing protein 1##AK314441|CDCP1|64866|CUB domain containing protein 1##AF468010|CDCP1|64866|CUB domain containing protein 1##AK026622|CDCP1|64866|CUB domain containing protein 1	0.919591	0.750563	CTCF.p2:-4:0.751	denovo_WM_7:75:0.767
chr10	26769937	26770109	reg1003379.p2	5.913	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-42317	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-42355	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-42706	+	AK096048 TSC_hg19_v1_chr10_-_26986612	216561	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	216623	+	TSC_hg19_v1_chr10_-_27057776 AK315914	287794	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	0.041592	0.0	
chr17	58219577	58219696	reg1003585.p1	5.913	+	TSC_hg19_v1_chr17_-_58213006 AK311448	-6625	-	TSC_hg19_v1_chr17_-_58156283 AK127708 AK314655 BC119771 BC119813 BX640819 BX640831 CR627418 NM_022070 AF349752	-63282	-	BC006971 TSC_hg19_v1_chr17_-_58042099 AK294806 AK296197 NM_016125	-177529	-	TSC_hg19_v1_chr17_+_58227302 BC057792 NM_000717 AK289715 AK298710	7654	+	TSC_hg19_v1_chr17_+_58227333 BC069649 M83670 BC074768 CR541766 CU691238	7726	+	CU691084 TSC_hg19_v1_chr17_-_58469313 BC054344	249682	-	AK127708|HEATR6|63897|HEAT repeat containing 6##AK314655|HEATR6|63897|HEAT repeat containing 6##BC119771|HEATR6|63897|HEAT repeat containing 6##BC119813|HEATR6|63897|HEAT repeat containing 6##BX640819|HEATR6|63897|HEAT repeat containing 6##BX640831|HEATR6|63897|HEAT repeat containing 6##CR627418|HEATR6|63897|HEAT repeat containing 6##NM_022070|HEATR6|63897|HEAT repeat containing 6##AF349752|HEATR6|63897|HEAT repeat containing 6##BC006971|RNFT1|51136|ring finger protein, transmembrane 1##AK294806|RNFT1|51136|ring finger protein, transmembrane 1##AK296197|RNFT1|51136|ring finger protein, transmembrane 1##NM_016125|RNFT1|51136|ring finger protein, transmembrane 1##BC057792|CA4|762|carbonic anhydrase IV##NM_000717|CA4|762|carbonic anhydrase IV##AK289715|CA4|762|carbonic anhydrase IV##AK298710|CA4|762|carbonic anhydrase IV##BC069649|CA4|762|carbonic anhydrase IV##M83670|CA4|762|carbonic anhydrase IV##BC074768|CA4|762|carbonic anhydrase IV##CR541766|CA4|762|carbonic anhydrase IV##BC054344|USP32|84669|ubiquitin specific peptidase 32	1.093524	0.0	
chr19	6538137	6538317	reg1003555.p1	5.913	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-7201	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-35910	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-56444	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	52805	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	52879	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	52931	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.996946	0.0	denovo_WM_7:2:0.232	denovo_WM_7:5:0.465
chr12	3287329	3287465	reg1005154.p1	5.912	+	NM_001168320 NM_006675 TSC_hg19_v1_chr12_+_3186544 AK223179 AK027366 AF089749 BC071881	-100835	+	TSC_hg19_v1_chr12_+_3069109 BX640921	-218336	+	TSC_hg19_v1_chr12_+_3068645 NM_003213 NM_201441 AY101179 BC015497 AK222947 U63824 NM_201443	-218803	+	AB209027 NM_019854 TSC_hg19_v1_chr12_+_3600458	313044	+	AK125333 TSC_hg19_v1_chr12_-_3601984	314588	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	574871	-	NM_001168320|TSPAN9|10867|tetraspanin 9##NM_006675|TSPAN9|10867|tetraspanin 9##AK223179|TSPAN9|10867|tetraspanin 9##AK027366|TSPAN9|10867|tetraspanin 9##AF089749|TSPAN9|10867|tetraspanin 9##BC071881|TSPAN9|10867|tetraspanin 9##BX640921|TEAD4|7004|TEA domain family member 4##NM_003213|TEAD4|7004|TEA domain family member 4##NM_201441|TEAD4|7004|TEA domain family member 4##AY101179|TEAD4|7004|TEA domain family member 4##BC015497|TEAD4|7004|TEA domain family member 4##AK222947|TEAD4|7004|TEA domain family member 4##U63824|TEAD4|7004|TEA domain family member 4##NM_201443|TEAD4|7004|TEA domain family member 4##AB209027|PRMT8|56341|protein arginine methyltransferase 8##NM_019854|PRMT8|56341|protein arginine methyltransferase 8##AK125333|LOC100129223|100129223|uncharacterized LOC100129223##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B	0.985088	0.0	denovo_WM_7:63:0.553	denovo_WM_7:66:0.368
chr16	11907499	11907609	reg1006053.p1	5.912	+	TSC_hg19_v1_chr16_-_11891103 NM_014153	-16439	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	-16503	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-70898	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	37850	-	TSC_hg19_v1_chr16_-_12009569 AB590486	102049	-	BC009503 TSC_hg19_v1_chr16_-_12009763 AK095483	102194	-	NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1##BC009503|GSPT1|2935|G1 to S phase transition 1##AK095483|GSPT1|2935|G1 to S phase transition 1	1.236818	0.0	denovo_WM_7:65:0.246	denovo_WM_7:80:0.255
chr16	89482228	89482371	reg1007325.p1	5.912	+	AK293862 NM_001242885	-94759	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-131343	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-132225	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	74632	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	92515	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	144766	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.99251	0.0	
chr2	214927144	214927248	reg1005760.p1	5.912	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-778039	+	AK124960 NM_001242575	-778268	-	BC028936 NM_001079526	-910864	-	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	349264	+	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	747163	-	AY033486 NM_015657	969613	-	BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	1.89289	0.0	denovo_WM_7:-29:0.366	denovo_WM_7:-30:0.577	denovo_WM_7:-45:0.763
chr3	61880794	61880958	reg1004325.p1	5.912	+	AB055764 TSC_hg19_v1_chr3_-_61728812	-152065	-	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-332900	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-333590	+	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	423830	+	BC017772 NM_020685	424519	+	AK290464 NM_018008	478313	-	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14##AK290464|FEZF2|55079|FEZ family zinc finger 2##NM_018008|FEZF2|55079|FEZ family zinc finger 2	0.0	0.0	
chr5	116054249	116054410	reg1009150.p1	5.912	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-143815	-	TSC_hg19_v1_chr5_+_115898220 D28352	-156105	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-633608	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2269909	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2352482	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2352836	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.995981	0.0	denovo_WM_7:15:0.895
chr6	21180523	21180703	reg1008032.p1	5.912	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-645890	+	CR749285 NM_001243076	-776580	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-778510	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	413759	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	486046	+	BC015850 NM_000948	1117116	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.993767	0.0	denovo_WM_7:-29:0.813
chr8	90738121	90738265	reg1009932.p1	5.912	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1398447	-	BC035011 AL833507 BC111778 AK093094 AX747918 NM_152418	-1851934	-	AK093121 AX747937 BC117326 BC117328 NM_173538	-2859520	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	31837	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	32091	+	AF061326 NM_004337	175902	+	AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##BC035011|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AL833507|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##BC111778|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093094|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##NM_152418|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093121|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117326|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117328|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_173538|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2	0.0	0.0	
chr19	12443078	12443218	reg1006700.p1	5.911	+	TSC_hg19_v1_chr19_-_12405615 BC136502 AK297528 BC032246 AB021642 BC001868 NM_001164276 NM_016264	-37496	-	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	-137242	+	AK023304 TSC_hg19_v1_chr19_+_12305836	-137315	+	AK313755 BC022523 AK092116 AX747362 NM_145276	1336	-	AK024418 AK295923 NM_030824	33312	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	68906	-	BC136502|ZNF44|51710|zinc finger protein 44##AK297528|ZNF44|51710|zinc finger protein 44##BC032246|ZNF44|51710|zinc finger protein 44##AB021642|ZNF44|51710|zinc finger protein 44##BC001868|ZNF44|51710|zinc finger protein 44##NM_001164276|ZNF44|51710|zinc finger protein 44##NM_016264|ZNF44|51710|zinc finger protein 44##AK023304|LOC100289333|100289333|uncharacterized LOC100289333##AK313755|ZNF563|147837|zinc finger protein 563##BC022523|ZNF563|147837|zinc finger protein 563##AK092116|ZNF563|147837|zinc finger protein 563##NM_145276|ZNF563|147837|zinc finger protein 563##AK024418|ZNF442|79973|zinc finger protein 442##AK295923|ZNF442|79973|zinc finger protein 442##NM_030824|ZNF442|79973|zinc finger protein 442##NM_001080821|ZNF799|90576|zinc finger protein 799	2.09888	0.0	denovo_WM_7:5:0.656	denovo_WM_7:21:0.308	denovo_WM_7:22:0.312	denovo_WM_7:23:0.327
chr22	45346688	45346802	reg1008242.p1	5.911	+	AK001306 NM_001017526 NM_001198726 NM_181335 BC059382 BC067824 BC048280	-198284	+	AK291564 TSC_hg19_v1_chr22_+_45098246 AF177331 AL355192 NM_181334	-248492	+	TSC_hg19_v1_chr22_+_45098090 NM_181333	-248677	+	TSC_hg19_v1_chr22_-_45404785 AK299836 AK297317 AK091480 AX747013 NM_001242450	58084	-	AB489146 CU012999 CU013287 CU680262 CR456448 BC012187 NM_138415	58759	-	TSC_hg19_v1_chr22_-_45405781 AK092243 AX747427 NM_001135862	59049	-	AK001306|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001017526|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001198726|ARHGAP8|23779|Rho GTPase activating protein 8##NM_181335|ARHGAP8|23779|Rho GTPase activating protein 8##BC059382|ARHGAP8|23779|Rho GTPase activating protein 8##BC067824|ARHGAP8|23779|Rho GTPase activating protein 8##BC048280|ARHGAP8|23779|Rho GTPase activating protein 8##AK291564|PRR5|55615|proline rich 5 (renal)##AF177331|PRR5|55615|proline rich 5 (renal)##AL355192|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181334|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181333|PRR5|55615|proline rich 5 (renal)##AK299836|PHF21B|112885|PHD finger protein 21B##AK297317|PHF21B|112885|PHD finger protein 21B##AK091480|PHF21B|112885|PHD finger protein 21B##NM_001242450|PHF21B|112885|PHD finger protein 21B##CU012999|PHF21B|112885|PHD finger protein 21B##CU013287|PHF21B|112885|PHD finger protein 21B##CR456448|PHF21B|112885|PHD finger protein 21B##BC012187|PHF21B|112885|PHD finger protein 21B##NM_138415|PHF21B|112885|PHD finger protein 21B##AK092243|PHF21B|112885|PHD finger protein 21B##NM_001135862|PHF21B|112885|PHD finger protein 21B	0.0	0.0	
chrX	115064444	115064601	reg1008106.p1	5.911	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-236654	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-267480	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-268916	+	BC003645 TSC_hg19_v1_chrX_-_115085443	20917	-	AK313927 NM_000686 X87723 U16957	237473	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	503245	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.157218	
chr11	74703989	74704118	reg1006386.p1	5.910	+	TSC_hg19_v1_chr11_+_74699955 NM_006656 AK022450 AK290442 AK303540	-4089	+	TSC_hg19_v1_chr11_+_74660321 BC064957 BC106066 AB587348 CU687980 D14658	-43713	+	TSC_hg19_v1_chr11_+_74660317 BC067821	-43735	+	NM_001005285 BC136958 BC136959	96724	-	NM_001145212 NM_007256 FM209050 TSC_hg19_v1_chr11_+_74862151 AK304783 AK302492 AK290234 AK300134 AB020687 BC127254 BC041095 AB026256 AL117465	158091	+	FM209054 FM209053 AF205073 NM_001145211 AK294503	166788	+	NM_006656|NEU3|10825|sialidase 3 (membrane sialidase)##AK022450|NEU3|10825|sialidase 3 (membrane sialidase)##AK290442|NEU3|10825|sialidase 3 (membrane sialidase)##AK303540|NEU3|10825|sialidase 3 (membrane sialidase)##BC064957|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##BC106066|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##D14658|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##BC067821|SPCS2|9789|signal peptidase complex subunit 2 homolog (S. cerevisiae)##NM_001005285|OR2AT4|341152|olfactory receptor, family 2, subfamily AT, member 4##BC136958|OR2AT4|341152|olfactory receptor, family 2, subfamily AT, member 4##BC136959|OR2AT4|341152|olfactory receptor, family 2, subfamily AT, member 4##NM_001145212|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_007256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209050|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK304783|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK302492|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK290234|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK300134|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB020687|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC127254|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##BC041095|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AB026256|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AL117465|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##FM209053|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AF205073|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##NM_001145211|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1##AK294503|SLCO2B1|11309|solute carrier organic anion transporter family, member 2B1	0.868052	0.0	denovo_WM_7:-35:0.362	denovo_WM_7:-40:0.376
chr1	22778381	22778484	reg1004817.p2	5.910	+	TSC_hg19_v1_chr1_+_22778350 AB007947 BC114607	-6	+	AK091019 AK095273 AX746732 NM_001083621 NM_014870 TSC_hg19_v1_chr1_+_22778343	-88	+	AY009398 BT020125 AB590593 AB061675 AY358947 AF316543 NM_030761 BC057781	-308921	-	TSC_hg19_v1_chr1_+_22889990 BC072417 NM_001006943 NM_020526 BC038796 AB527136	111624	+	TSC_hg19_v1_chr1_+_22963170 NM_015991 BC030153 AK311980 BC071986	184707	+	NM_001114101 NM_172369 AK057792 TSC_hg19_v1_chr1_+_22970125 AF087892 AK226152 BC009016 AK130613	191755	+	AB007947|ZBTB40|9923|zinc finger and BTB domain containing 40##BC114607|ZBTB40|9923|zinc finger and BTB domain containing 40##AK091019|ZBTB40|9923|zinc finger and BTB domain containing 40##AK095273|ZBTB40|9923|zinc finger and BTB domain containing 40##NM_001083621|ZBTB40|9923|zinc finger and BTB domain containing 40##NM_014870|ZBTB40|9923|zinc finger and BTB domain containing 40##AY009398|WNT4|54361|wingless-type MMTV integration site family, member 4##BT020125|WNT4|54361|wingless-type MMTV integration site family, member 4##AB061675|WNT4|54361|wingless-type MMTV integration site family, member 4##AY358947|WNT4|54361|wingless-type MMTV integration site family, member 4##AF316543|WNT4|54361|wingless-type MMTV integration site family, member 4##NM_030761|WNT4|54361|wingless-type MMTV integration site family, member 4##BC057781|WNT4|54361|wingless-type MMTV integration site family, member 4##BC072417|EPHA8|2046|EPH receptor A8##NM_001006943|EPHA8|2046|EPH receptor A8##NM_020526|EPHA8|2046|EPH receptor A8##BC038796|EPHA8|2046|EPH receptor A8##NM_015991|C1QA|712|complement component 1, q subcomponent, A chain##BC030153|C1QA|712|complement component 1, q subcomponent, A chain##AK311980|C1QA|712|complement component 1, q subcomponent, A chain##BC071986|C1QA|712|complement component 1, q subcomponent, A chain##NM_001114101|C1QC|714|complement component 1, q subcomponent, C chain##NM_172369|C1QC|714|complement component 1, q subcomponent, C chain##AK057792|C1QC|714|complement component 1, q subcomponent, C chain##AF087892|C1QC|714|complement component 1, q subcomponent, C chain##AK226152|C1QC|714|complement component 1, q subcomponent, C chain##BC009016|C1QC|714|complement component 1, q subcomponent, C chain##AK130613|C1QC|714|complement component 1, q subcomponent, C chain	0.0	0.078657	
chr14	96763509	96763652	reg1006949.p2	5.910	+	AK291970 AK309528 NM_000710 TSC_hg19_v1_chr14_+_96722546 U30271 AJ238044	-41026	+	TSC_hg19_v1_chr14_+_96671180 AK299316 AK311049 M88714	-92384	+	CR749338 U35875 TSC_hg19_v1_chr14_+_96671131 NM_000623	-92503	+	TSC_hg19_v1_chr14_-_96829651 AK055200 NM_018036	66082	-	TSC_hg19_v1_chr14_+_96829862 AK000796 AK314423 AF151044	66288	+	BC004818 NM_016472	82441	+	AK291970|BDKRB1|623|bradykinin receptor B1##AK309528|BDKRB1|623|bradykinin receptor B1##NM_000710|BDKRB1|623|bradykinin receptor B1##U30271|BDKRB1|623|bradykinin receptor B1##AJ238044|BDKRB1|623|bradykinin receptor B1##AK299316|BDKRB2|624|bradykinin receptor B2##AK311049|BDKRB2|624|bradykinin receptor B2##M88714|BDKRB2|624|bradykinin receptor B2##CR749338|BDKRB2|624|bradykinin receptor B2##NM_000623|BDKRB2|624|bradykinin receptor B2##AK055200|ATG2B|55102|ATG2 autophagy related 2 homolog B (S. cerevisiae)##NM_018036|ATG2B|55102|ATG2 autophagy related 2 homolog B (S. cerevisiae)##AK000796|C14orf129|51527|chromosome 14 open reading frame 129##AK314423|C14orf129|51527|chromosome 14 open reading frame 129##AF151044|C14orf129|51527|chromosome 14 open reading frame 129##BC004818|C14orf129|51527|chromosome 14 open reading frame 129##NM_016472|C14orf129|51527|chromosome 14 open reading frame 129	0.986857	0.959916	CTCF.p2:-36:0.960	denovo_WM_7:56:0.922
chr5	73687331	73687475	reg1006762.p1	5.910	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-578053	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-765418	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-825821	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	249060	-	AK096578 NM_003633	249845	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	293605	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	0.057628	0.0	
chr7	18032031	18032125	reg1006000.p2	5.910	+	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	-51951	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	-52029	-	TSC_hg19_v1_chr7_+_17382906 BC021696	-649172	+	BC062797 BC005309 M57423 NM_175886	35387	-	TSC_hg19_v1_chr7_+_18126583 AK304298 NM_001204144	94513	+	AK097178 TSC_hg19_v1_chr7_+_18330071	297981	+	AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##BC021696|AHR|196|aryl hydrocarbon receptor##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##AK304298|HDAC9|9734|histone deacetylase 9##NM_001204144|HDAC9|9734|histone deacetylase 9##AK097178|HDAC9|9734|histone deacetylase 9	1.120769	0.01547	denovo_WM_7:-48:0.340	denovo_WM_7:-49:0.338
chr1	153959235	153959397	reg1008127.p1	5.907	+	BC009227 AF498948 BT019700 BT019701 AY423722 CU674404 AB464116 TSC_hg19_v1_chr1_-_153958723 AM392651 AM393152 AM393265 AM393465 AM393739 AM393810 AK128675 BC073168 AK291580 BC000799 NM_002870 X75593 BC094846	-542	-	NM_006694	-8866	-	TSC_hg19_v1_chr1_-_153950145 AF115850 AB016488 BC000499	-9161	-	AK312070 BC070219 TSC_hg19_v1_chr1_+_153963237 D28454 NM_001030 L19739 BC002658 U57847	3932	+	AK128000 NM_001159484 NM_207308	168275	-	AF474157 AB529194 TSC_hg19_v1_chr1_-_154155632 AY004867 AK125367	196297	-	BC009227|RAB13|5872|RAB13, member RAS oncogene family##AF498948|RAB13|5872|RAB13, member RAS oncogene family##BT019700|RAB13|5872|RAB13, member RAS oncogene family##BT019701|RAB13|5872|RAB13, member RAS oncogene family##AY423722|RAB13|5872|RAB13, member RAS oncogene family##AM392651|RAB13|5872|RAB13, member RAS oncogene family##AM393152|RAB13|5872|RAB13, member RAS oncogene family##AM393265|RAB13|5872|RAB13, member RAS oncogene family##AM393465|RAB13|5872|RAB13, member RAS oncogene family##AM393739|RAB13|5872|RAB13, member RAS oncogene family##AM393810|RAB13|5872|RAB13, member RAS oncogene family##AK128675|RAB13|5872|RAB13, member RAS oncogene family##BC073168|RAB13|5872|RAB13, member RAS oncogene family##AK291580|RAB13|5872|RAB13, member RAS oncogene family##BC000799|RAB13|5872|RAB13, member RAS oncogene family##NM_002870|RAB13|5872|RAB13, member RAS oncogene family##X75593|RAB13|5872|RAB13, member RAS oncogene family##BC094846|RAB13|5872|RAB13, member RAS oncogene family##NM_006694|JTB|10899|jumping translocation breakpoint##AF115850|JTB|10899|jumping translocation breakpoint##AB016488|JTB|10899|jumping translocation breakpoint##BC000499|JTB|10899|jumping translocation breakpoint##AK312070|RPS27|6232|ribosomal protein S27##BC070219|RPS27|6232|ribosomal protein S27##D28454|RPS27|6232|ribosomal protein S27##NM_001030|RPS27|6232|ribosomal protein S27##L19739|RPS27|6232|ribosomal protein S27##BC002658|RPS27|6232|ribosomal protein S27##U57847|RPS27|6232|ribosomal protein S27##AK128000|NUP210L|91181|nucleoporin 210kDa-like##NM_001159484|NUP210L|91181|nucleoporin 210kDa-like##NM_207308|NUP210L|91181|nucleoporin 210kDa-like##AF474157|TPM3|7170|tropomyosin 3##AY004867|TPM3|7170|tropomyosin 3##AK125367|TPM3|7170|tropomyosin 3	0.0	0.971487	CTCF.p2:70:0.971
chr14	34484389	34484567	reg1006722.p1	5.907	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-64329	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1075988	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1685942	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	447009	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	524407	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	614877	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.0	0.0	
chr19	10517538	10517718	reg1005060.p1	5.907	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-3372	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-3415	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	-3459	-	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	9875	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	13602	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	23799	+	NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.990015	0.0	
chr3	182903624	182903759	reg1006810.p2	5.905	+	TSC_hg19_v1_chr3_-_182880523 AB013924 AK313172 BC032940 NM_014398	-23127	-	TSC_hg19_v1_chr3_-_182880435 DQ892118	-23252	-	BC036395 TSC_hg19_v1_chr3_-_182833987	-69768	-	TSC_hg19_v1_chr3_+_182970969 NM_032047 AK074424	67257	+	AB209517 TSC_hg19_v1_chr3_+_182971343	67587	+	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	67915	+	AB013924|LAMP3|27074|lysosomal-associated membrane protein 3##AK313172|LAMP3|27074|lysosomal-associated membrane protein 3##BC032940|LAMP3|27074|lysosomal-associated membrane protein 3##NM_014398|LAMP3|27074|lysosomal-associated membrane protein 3##DQ892118|LAMP3|27074|lysosomal-associated membrane protein 3##BC036395|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##NM_032047|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK074424|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AB209517|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	0.0	0.0	
chr7	140098361	140098527	reg1006757.p1	5.905	+	AL136583 AL136583 TSC_hg19_v1_chr7_-_140098295 AK299276 BC028380 BC028380 BC046567 BC046567 AK296543 AK300265 AK074823 AK074823 NM_032295 NM_207113	-145	-	TSC_hg19_v1_chr7_+_139877154 AK026372	-221288	+	TSC_hg19_v1_chr7_-_139876751 AB528281 AK131497 NM_030647	-221582	-	NM_001008749	5398	+	TSC_hg19_v1_chr7_-_140179165 AB209298 AB527778 DQ892404 EU176516 BC064838 AM236048 BC037400 BC051821 BC012398 AK297361 AK315552	80718	-	TSC_hg19_v1_chr7_-_140179306 AF192784 AL136812 AF117233 BC025955	80826	-	AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK299276|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK296543|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK300265|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_032295|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_207113|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK026372|LOC100134229|100134229|uncharacterized LOC100134229##AK131497|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##NM_030647|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##NM_001008749|RAB19|401409|RAB19, member RAS oncogene family##AB209298|MKRN1|23608|makorin ring finger protein 1##DQ892404|MKRN1|23608|makorin ring finger protein 1##EU176516|MKRN1|23608|makorin ring finger protein 1##BC064838|MKRN1|23608|makorin ring finger protein 1##AM236048|MKRN1|23608|makorin ring finger protein 1##BC037400|MKRN1|23608|makorin ring finger protein 1##BC051821|MKRN1|23608|makorin ring finger protein 1##BC012398|MKRN1|23608|makorin ring finger protein 1##AK297361|MKRN1|23608|makorin ring finger protein 1##AK315552|MKRN1|23608|makorin ring finger protein 1##AF192784|MKRN1|23608|makorin ring finger protein 1##AL136812|MKRN1|23608|makorin ring finger protein 1##AF117233|MKRN1|23608|makorin ring finger protein 1##BC025955|MKRN1|23608|makorin ring finger protein 1	0.945518	0.0	denovo_WM_7:98:0.362	denovo_WM_7:99:0.422
chr10	22622253	22622422	reg1007942.p1	5.904	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-12172	+	TSC_hg19_v1_chr10_+_22605316 NM_001204062 NM_012071 BX647275 AF201948 BC022898 AF078848 AK128789 AK313235 AK295109 AY542159	-17012	+	TSC_hg19_v1_chr10_+_22540999 AK094582	-81324	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	12119	+	TSC_hg19_v1_chr10_+_22726003 AK295718	103662	+	AK294817 TSC_hg19_v1_chr10_-_23003038	380700	-	NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##NM_001204062|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##NM_012071|COMMD3|23412|COMM domain containing 3##BX647275|COMMD3|23412|COMM domain containing 3##AF201948|COMMD3|23412|COMM domain containing 3##BC022898|COMMD3|23412|COMM domain containing 3##AF078848|COMMD3|23412|COMM domain containing 3##AK128789|COMMD3|23412|COMM domain containing 3##AK313235|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##AY542159|COMMD3|23412|COMM domain containing 3##AK094582|LOC100130992|100130992|uncharacterized LOC100130992##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	0.901219	0.0	denovo_WM_7:2:0.901
chr17	8761206	8761351	reg1004801.p1	5.904	+	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-58726	-	BC146949 BC146966 BC171861 NM_001128076	-99402	-	BC029224 AK057296 NM_001158261 NM_144681	-113150	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	9706	-	AY725853 AF128881 NM_014308	54538	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	107703	-	BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5	0.99773	0.0	denovo_WM_7:-50:0.238	denovo_WM_7:-51:0.238	denovo_WM_7:-52:0.238	denovo_WM_7:-53:0.238
chr4	140129781	140129939	reg1006245.p1	5.904	+	TSC_hg19_v1_chr4_-_140098351 AK311505	-31523	-	U43188 NM_201999	-69257	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	-124249	-	BC037987 BC104173 BC104174 AF329088 AF484960 NM_032623	71555	-	CR457005 AF047184 TSC_hg19_v1_chr4_-_140216970 AF047435 AK291147 BC101798 BC112061	87113	-	BC107682 NM_001184986 NM_001184991 NM_002494	92512	-	U43188|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_201999|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC037987|C4orf49|84709|chromosome 4 open reading frame 49##BC104173|C4orf49|84709|chromosome 4 open reading frame 49##BC104174|C4orf49|84709|chromosome 4 open reading frame 49##AF329088|C4orf49|84709|chromosome 4 open reading frame 49##AF484960|C4orf49|84709|chromosome 4 open reading frame 49##NM_032623|C4orf49|84709|chromosome 4 open reading frame 49##CR457005|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AF047184|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AF047435|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AK291147|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##BC101798|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##BC112061|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##BC107682|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184986|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184991|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_002494|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa	1.362274	0.0	denovo_WM_7:-9:0.328	denovo_WM_7:-10:0.320	denovo_WM_7:-11:0.320	denovo_WM_7:16:0.334
chr21	43348918	43349059	reg1004559.p2	5.903	+	BC062323 AL833323 NM_199050	-2199	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-49490	-	AK027424 TSC_hg19_v1_chr21_-_43187270	-161721	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	25095	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	81483	-	AB051810 AB051811 NM_001199527 NM_001199528	134079	+	BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1	0.0	0.0	
chr10	17711254	17711434	reg1001032.p1	5.902	+	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	-25114	+	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	-51971	-	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	-214979	-	NM_001098844 BC157856	82910	+	AK308132 AK308167 BC142642 J05550 NM_002438 X55635 BC146838 DQ663787	140059	+	NM_001098844 BC157856	329877	+	NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##BC142642|MRC1|4360|mannose receptor, C type 1##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236	1.011927	0.0	denovo_WM_7:17:0.921
chr13	68311263	68311424	reg1007205.p1	5.902	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	-506839	-	AK289924 NM_022843	-6321689	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-6322090	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	2371198	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	4128916	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	4129420	-	BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)	0.012813	0.0	
chr19	44281789	44281907	reg1006888.p1	5.902	+	TSC_hg19_v1_chr19_-_44259117 NM_019108	-22720	-	TSC_hg19_v1_chr19_-_44259074 AK022948	-22755	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	-22828	-	AB128983 AB128984 AB128985 AF000972 AF022150 BT007426 CU677271 DQ891493 DQ894684 BC015337 AF395661 TSC_hg19_v1_chr19_-_44285137 AF033021	3227	-	TSC_hg19_v1_chr19_-_44285437 AF022797 NM_002250	3592	-	CU691254 AY358719 BC057816 AK301693 NM_001031749	24720	-	NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB128983|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128984|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128985|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF000972|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022150|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BT007426|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ891493|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ894684|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BC015337|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF395661|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF033021|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022797|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##NM_002250|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AY358719|LYPD5|284348|LY6/PLAUR domain containing 5##BC057816|LYPD5|284348|LY6/PLAUR domain containing 5##AK301693|LYPD5|284348|LY6/PLAUR domain containing 5##NM_001031749|LYPD5|284348|LY6/PLAUR domain containing 5	0.995233	0.0	denovo_WM_7:-16:0.586	denovo_WM_7:-17:0.292
chr3	111372600	111372759	reg1006261.p1	5.902	+	NM_024508	-58498	-	AK290719 AK315237 TSC_hg19_v1_chr3_+_111261063 AL833681 CU676690	-111612	+	NM_005816 NM_198196 TSC_hg19_v1_chr3_+_111260970 BC020749 BC027914	-111713	+	AK056141 NM_001185106 NM_153268 TSC_hg19_v1_chr3_+_111393527	20846	+	AK296841 NM_001134437 TSC_hg19_v1_chr3_+_111451348 CR749654 AK307491	78666	+	NM_001134438 NM_145753 AK096151 TSC_hg19_v1_chr3_+_111578114 AK315050	205392	+	NM_024508|ZBED2|79413|zinc finger, BED-type containing 2##AK290719|CD96|10225|CD96 molecule##AK315237|CD96|10225|CD96 molecule##AL833681|CD96|10225|CD96 molecule##NM_005816|CD96|10225|CD96 molecule##NM_198196|CD96|10225|CD96 molecule##BC020749|CD96|10225|CD96 molecule##BC027914|CD96|10225|CD96 molecule##AK056141|PLCXD2|257068|phosphatidylinositol-specific phospholipase C, X domain containing 2##NM_001185106|PLCXD2|257068|phosphatidylinositol-specific phospholipase C, X domain containing 2##NM_153268|PLCXD2|257068|phosphatidylinositol-specific phospholipase C, X domain containing 2##AK296841|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##NM_001134437|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##CR749654|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##AK307491|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##NM_001134438|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##NM_145753|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##AK096151|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2##AK315050|PHLDB2|90102|pleckstrin homology-like domain, family B, member 2	0.802837	0.0	denovo_WM_7:-12:0.581
chr5	172662348	172662493	reg1008075.p2	5.902	+	AB021133 CU693024 AB464641 DQ893313 DQ894104 DQ896627 BC025711 AK290615 AK307249 AK297844 AK307218 AK309495 U34962 AK307247 NM_001166175 NM_001166176 NM_004387	-221	-	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	-90924	+	TSC_hg19_v1_chr5_+_172484383 AK297424	-178037	+	AF031036 BT019591 CR541825 CU674324 EU832632 EU832707 BC006352 BC013958 TSC_hg19_v1_chr5_-_172755285 AF055460 AB012664 AF098462	92842	-	AK075406 TSC_hg19_v1_chr5_-_172755420 BC000658 AK027390 AK027663	93023	-	AK095891 NM_003714	94085	-	AB021133|NKX2-5|1482|NK2 homeobox 5##DQ893313|NKX2-5|1482|NK2 homeobox 5##DQ894104|NKX2-5|1482|NK2 homeobox 5##DQ896627|NKX2-5|1482|NK2 homeobox 5##BC025711|NKX2-5|1482|NK2 homeobox 5##AK290615|NKX2-5|1482|NK2 homeobox 5##AK307249|NKX2-5|1482|NK2 homeobox 5##AK297844|NKX2-5|1482|NK2 homeobox 5##AK307218|NKX2-5|1482|NK2 homeobox 5##AK309495|NKX2-5|1482|NK2 homeobox 5##U34962|NKX2-5|1482|NK2 homeobox 5##AK307247|NKX2-5|1482|NK2 homeobox 5##NM_001166175|NKX2-5|1482|NK2 homeobox 5##NM_001166176|NKX2-5|1482|NK2 homeobox 5##NM_004387|NKX2-5|1482|NK2 homeobox 5##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AK297424|C5orf41|153222|chromosome 5 open reading frame 41##AF031036|STC2|8614|stanniocalcin 2##BT019591|STC2|8614|stanniocalcin 2##CR541825|STC2|8614|stanniocalcin 2##EU832632|STC2|8614|stanniocalcin 2##EU832707|STC2|8614|stanniocalcin 2##BC006352|STC2|8614|stanniocalcin 2##BC013958|STC2|8614|stanniocalcin 2##AF055460|STC2|8614|stanniocalcin 2##AB012664|STC2|8614|stanniocalcin 2##AF098462|STC2|8614|stanniocalcin 2##AK075406|STC2|8614|stanniocalcin 2##BC000658|STC2|8614|stanniocalcin 2##AK027390|STC2|8614|stanniocalcin 2##AK027663|STC2|8614|stanniocalcin 2##AK095891|STC2|8614|stanniocalcin 2##NM_003714|STC2|8614|stanniocalcin 2	1.996552	0.0	
chr10	69373141	69373244	reg1003574.p2	5.901	+	NM_178011 BX640611 AY358315 BC111492	-687377	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-4091951	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-4092030	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	52204	-	AF091606 AK313882 NM_013266	82745	-	CR457184 AF176013 BC017018 AK289537 AF176012 NM_021800 NM_201262	224660	-	NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##CR457184|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176013|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##BC017018|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AK289537|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176012|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_021800|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_201262|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12	1.011004	0.0	denovo_WM_7:-53:0.372	denovo_WM_7:-54:0.461
chr13	99164565	99164706	reg1001808.p2	5.901	+	TSC_hg19_v1_chr13_+_99058147 AF339817	-106429	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-335130	-	TSC_hg19_v1_chr13_+_98795717 AB008430 BC065020	-368917	+	AF083420 NM_003576	9660	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	64419	-	AF024636 AK297583 AK299140 TSC_hg19_v1_chr13_-_99229127	64487	-	EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##AB008430|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC065020|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24##AF024636|STK24|8428|serine/threonine kinase 24##AK297583|STK24|8428|serine/threonine kinase 24##AK299140|STK24|8428|serine/threonine kinase 24	0.0	0.0	
chr19	19726004	19726170	reg1007685.p1	5.901	+	TSC_hg19_v1_chr19_+_19649101 AK314213 AF542080	-76981	+	AK127735 BC068256 NM_153221 TSC_hg19_v1_chr19_+_19649088	-77015	+	NM_001190328 NM_198537 TSC_hg19_v1_chr19_+_19639680 AK126916 BC020948 AB464360 DQ778079 DQ778080	-86382	+	BC033067 BC143092 AK097427 AK301631 BC143588 BC143589 TSC_hg19_v1_chr19_-_19729548 BC141859 NM_025245	3494	-	AF011466 AK316573 BC025695 AF197929 TSC_hg19_v1_chr19_-_19739025 NM_004720	12920	-	BC126436 BC144142 TSC_hg19_v1_chr19_-_19754416 BC032057 AK297220 AF132541	28306	-	AK314213|CILP2|148113|cartilage intermediate layer protein 2##AF542080|CILP2|148113|cartilage intermediate layer protein 2##AK127735|CILP2|148113|cartilage intermediate layer protein 2##BC068256|CILP2|148113|cartilage intermediate layer protein 2##NM_153221|CILP2|148113|cartilage intermediate layer protein 2##NM_001190328|YJEFN3|374887|YjeF N-terminal domain containing 3##NM_198537|YJEFN3|374887|YjeF N-terminal domain containing 3##AK126916|YJEFN3|374887|YjeF N-terminal domain containing 3##BC020948|YJEFN3|374887|YjeF N-terminal domain containing 3##DQ778079|YJEFN3|374887|YjeF N-terminal domain containing 3##DQ778080|YJEFN3|374887|YjeF N-terminal domain containing 3##BC033067|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143092|PBX4|80714|pre-B-cell leukemia homeobox 4##AK097427|PBX4|80714|pre-B-cell leukemia homeobox 4##AK301631|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143588|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143589|PBX4|80714|pre-B-cell leukemia homeobox 4##BC141859|PBX4|80714|pre-B-cell leukemia homeobox 4##NM_025245|PBX4|80714|pre-B-cell leukemia homeobox 4##AF011466|LPAR2|9170|lysophosphatidic acid receptor 2##AK316573|LPAR2|9170|lysophosphatidic acid receptor 2##BC025695|LPAR2|9170|lysophosphatidic acid receptor 2##AF197929|LPAR2|9170|lysophosphatidic acid receptor 2##NM_004720|LPAR2|9170|lysophosphatidic acid receptor 2##BC126436|GMIP|51291|GEM interacting protein##BC144142|GMIP|51291|GEM interacting protein##BC032057|GMIP|51291|GEM interacting protein##AK297220|GMIP|51291|GEM interacting protein##AF132541|GMIP|51291|GEM interacting protein	2.942296	0.0	denovo_WM_7:72:0.427	denovo_WM_7:73:0.458	denovo_WM_7:-88:0.890	denovo_WM_7:-103:0.448	denovo_WM_7:-104:0.540
chr3	151000875	151000980	reg1006216.p1	5.901	+	BC034989 D13626 NM_014879	-4736	-	AK289617 NM_001081455	-33978	-	AF002986 BC036815 NM_013308	-79961	-	AF237763 BC112941 BC117565 AB031548 BC132888 BC132890 AK027784 NM_023915	33647	-	BC041116 JF810883 BC029363 AK313208 NM_176894	46395	-	AF313449 AF321815 NM_176876	57584	-	BC034989|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##D13626|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_014879|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##AK289617|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_001081455|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##AF002986|GPR171|29909|G protein-coupled receptor 171##BC036815|GPR171|29909|G protein-coupled receptor 171##NM_013308|GPR171|29909|G protein-coupled receptor 171##AF237763|GPR87|53836|G protein-coupled receptor 87##BC112941|GPR87|53836|G protein-coupled receptor 87##BC117565|GPR87|53836|G protein-coupled receptor 87##AB031548|GPR87|53836|G protein-coupled receptor 87##BC132888|GPR87|53836|G protein-coupled receptor 87##BC132890|GPR87|53836|G protein-coupled receptor 87##AK027784|GPR87|53836|G protein-coupled receptor 87##NM_023915|GPR87|53836|G protein-coupled receptor 87##BC041116|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##BC029363|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##AK313208|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##NM_176894|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##AF313449|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AF321815|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##NM_176876|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	0.0	0.638914	CTCF.p2:-18:0.639
chr4	2956345	2956499	reg1007492.p2	5.901	+	TSC_hg19_v1_chr4_+_2936642 AK054619 BC020978 BC032331 BC041605	-19768	+	TSC_hg19_v1_chr4_-_2936577 NM_001146069	-19847	-	TSC_hg19_v1_chr4_-_2936515 BC001502 BC014979	-19935	-	TSC_hg19_v1_chr4_-_2965083 CU693114 BC026035	8641	-	TSC_hg19_v1_chr4_-_2965091 AF040965	8676	-	BC053635 TSC_hg19_v1_chr4_-_2965134 BC017358 NM_003703	8701	-	BC020978|C4orf10|317648|chromosome 4 open reading frame 10##BC041605|C4orf10|317648|chromosome 4 open reading frame 10##NM_001146069|MFSD10|10227|major facilitator superfamily domain containing 10##BC001502|MFSD10|10227|major facilitator superfamily domain containing 10##BC014979|MFSD10|10227|major facilitator superfamily domain containing 10##BC026035|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##AF040965|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##BC053635|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##BC017358|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##NM_003703|NOP14|8602|NOP14 nucleolar protein homolog (yeast)	0.0	0.0	
chr16	55237296	55237476	reg1004687.p2	5.900	+	AY335945 BC131510 NM_001252197 NM_005853	-272276	+	AF275804 TSC_hg19_v1_chr16_-_54962719	-274671	-	TSC_hg19_v1_chr16_-_54320368 AY335943 NM_024336	-916993	-	AY335937 NM_024335	121084	+	TSC_hg19_v1_chr16_+_55513109 NM_004530 X58968 AK312711 BC002576 DQ891952 DQ895138 AB385158 CU678050 J03210	275734	+	AK310314 NM_001127891	278084	+	AY335945|IRX5|10265|iroquois homeobox 5##BC131510|IRX5|10265|iroquois homeobox 5##NM_001252197|IRX5|10265|iroquois homeobox 5##NM_005853|IRX5|10265|iroquois homeobox 5##AF275804|CRNDE|643911|colorectal neoplasia differentially expressed (non-protein coding)##AY335943|IRX3|79191|iroquois homeobox 3##NM_024336|IRX3|79191|iroquois homeobox 3##AY335937|IRX6|79190|iroquois homeobox 6##NM_024335|IRX6|79190|iroquois homeobox 6##NM_004530|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##X58968|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK312711|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##BC002576|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ891952|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ895138|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##J03210|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK310314|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##NM_001127891|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	0.33279	0.0	denovo_WM_7:-97:0.333
chr19	38396401	38396467	reg1007933.p2	5.900	+	TSC_hg19_v1_chr19_+_38308124 AK092337	-88295	+	TSC_hg19_v1_chr19_+_38307973 AK309685	-88425	+	BC064962 AK074539 NM_001172689 NM_001172690 NM_001172691 NM_001172692 NM_152360	-126220	-	AK302913 AY026504 AK128826 NM_031951	840	-	TSC_hg19_v1_chr19_+_38397847 NM_015073	1423	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	1478	+	AK092337|LOC644554|644554|uncharacterized LOC644554##AK309685|LOC644554|644554|uncharacterized LOC644554##BC064962|ZNF573|126231|zinc finger protein 573##AK074539|ZNF573|126231|zinc finger protein 573##NM_001172689|ZNF573|126231|zinc finger protein 573##NM_001172690|ZNF573|126231|zinc finger protein 573##NM_001172691|ZNF573|126231|zinc finger protein 573##NM_001172692|ZNF573|126231|zinc finger protein 573##NM_152360|ZNF573|126231|zinc finger protein 573##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3	0.0	0.0	
chr2	102332938	102333072	reg1007000.p1	5.900	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-18653	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-241812	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-329016	-	TSC_hg19_v1_chr2_+_102508334 BC045694	175337	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	175527	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	275358	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	1.524591	0.012561	denovo_WM_7:-24:0.981	denovo_WM_7:-79:0.380
chr12	120875223	120875331	reg1007381.p1	5.899	+	AB463899 AB012851 NM_002442 TSC_hg19_v1_chr12_-_120806968	-68341	-	AB464016 EU832774 GQ129318 AK311830 BC005386 BC013384 BC106725 BC106726 M21054 NM_000928	-109704	-	NM_012240 TSC_hg19_v1_chr12_+_120740123 BC034736 AF083109 BC109319 BC109320	-135135	+	TSC_hg19_v1_chr12_+_120875920 AK312009 NM_004373 BC107861 BC070186 BC007723 DQ893099 DQ896371	633	+	U75688 DQ893091 DQ896363 AF161481 AK312006 BC055313 BC002638 NM_016399	8912	-	TSC_hg19_v1_chr12_+_120884261 NM_176818 AK094319	8943	+	AB012851|MSI1|4440|musashi homolog 1 (Drosophila)##NM_002442|MSI1|4440|musashi homolog 1 (Drosophila)##EU832774|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##GQ129318|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##AK311830|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC005386|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC013384|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC106725|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC106726|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##M21054|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##NM_000928|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##NM_012240|SIRT4|23409|sirtuin 4##BC034736|SIRT4|23409|sirtuin 4##AF083109|SIRT4|23409|sirtuin 4##BC109319|SIRT4|23409|sirtuin 4##BC109320|SIRT4|23409|sirtuin 4##AK312009|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##NM_004373|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC107861|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC070186|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC007723|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##DQ893099|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##DQ896371|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##U75688|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##DQ893091|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##DQ896363|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##AF161481|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##AK312006|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##BC055313|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##BC002638|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##NM_016399|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##NM_176818|GATC|283459|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)##AK094319|GATC|283459|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	1.99294	0.0	denovo_WM_7:-55:0.250	denovo_WM_7:-56:0.675	denovo_WM_7:-71:0.822
chr12	648609	648758	reg1007193.p1	5.899	+	AB089940 NM_173593	-79141	+	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	-137902	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-150081	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	103495	+	TSC_hg19_v1_chr12_-_752800 AK298043	104136	-	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	124032	-	AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2	0.9957	0.0	denovo_WM_7:24:0.294	denovo_WM_7:25:0.294	denovo_WM_7:26:0.294
chr21	32480269	32480393	reg1006379.p1	5.899	+	AB096964 NM_001099219	-69537	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-226473	-	AJ457063 AB096962 NM_181606	-278343	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	451027	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	551676	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	593787	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.881656	0.0	denovo_WM_7:-1:0.370	denovo_WM_7:1:0.237
chrX	106961366	106961508	reg1009536.p1	5.899	+	AF153603 AF228339 AB025432 AF183393 BC072446 TSC_hg19_v1_chrX_-_106960293 AL110191 NM_004089 CR933650	-1156	-	CR533450 EU831656 EU831739 TSC_hg19_v1_chrX_-_106960193 AK311834 AY007119 AK127938	-1308	-	BC018148 Z50781 NM_001015881	-1784	-	AK300535 TSC_hg19_v1_chrX_-_107018990 AK092669 AX747661	57502	-	TSC_hg19_v1_chrX_-_107019012 NM_198057	57571	-	TSC_hg19_v1_chrX_+_107069107 NM_012216 NM_052817	107666	+	AF153603|TSC22D3|1831|TSC22 domain family, member 3##AF228339|TSC22D3|1831|TSC22 domain family, member 3##AB025432|TSC22D3|1831|TSC22 domain family, member 3##AF183393|TSC22D3|1831|TSC22 domain family, member 3##BC072446|TSC22D3|1831|TSC22 domain family, member 3##AL110191|TSC22D3|1831|TSC22 domain family, member 3##NM_004089|TSC22D3|1831|TSC22 domain family, member 3##CR933650|TSC22D3|1831|TSC22 domain family, member 3##CR533450|TSC22D3|1831|TSC22 domain family, member 3##EU831656|TSC22D3|1831|TSC22 domain family, member 3##EU831739|TSC22D3|1831|TSC22 domain family, member 3##AK311834|TSC22D3|1831|TSC22 domain family, member 3##AY007119|TSC22D3|1831|TSC22 domain family, member 3##AK127938|TSC22D3|1831|TSC22 domain family, member 3##BC018148|TSC22D3|1831|TSC22 domain family, member 3##Z50781|TSC22D3|1831|TSC22 domain family, member 3##NM_001015881|TSC22D3|1831|TSC22 domain family, member 3##AK300535|TSC22D3|1831|TSC22 domain family, member 3##AK092669|TSC22D3|1831|TSC22 domain family, member 3##NM_198057|TSC22D3|1831|TSC22 domain family, member 3##NM_012216|MID2|11043|midline 2##NM_052817|MID2|11043|midline 2	0.146269	0.475624	CTCF.p2:41:0.327
chr10	21807399	21807548	reg1008549.p1	5.898	+	AK303207 TSC_hg19_v1_chr10_-_21807188	-319	-	AL834446 TSC_hg19_v1_chr10_-_21805813	-1682	-	TSC_hg19_v1_chr10_-_21786207 NM_001010911	-21248	-	AK131456 NM_207371	7137	-	BC032532 NM_001195627 NM_001195628 NM_001195630 NM_004641 TSC_hg19_v1_chr10_+_21823160	15654	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	15803	+	AL834446|C10orf140|387640|chromosome 10 open reading frame 140##NM_001010911|C10orf114|399726|chromosome 10 open reading frame 114##AK131456|C10orf140|387640|chromosome 10 open reading frame 140##NM_207371|C10orf140|387640|chromosome 10 open reading frame 140##BC032532|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195627|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195628|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195630|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_004641|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	0.989483	0.0	denovo_WM_7:1:0.206	denovo_WM_7:2:0.748
chr5	130603656	130603787	reg1002687.p5	5.898	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-3921	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-3953	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-3965	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	367036	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	367098	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	367157	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	1.865398	0.0	denovo_WM_7:30:0.715	denovo_WM_7:45:0.776
chr2	37425237	37425402	reg1007747.p1	5.897	+	TSC_hg19_v1_chr2_+_37423638 BC065768 AK001814	-1686	+	BC140797 BC144573 BC144574 NM_001032377	-9630	-	TSC_hg19_v1_chr2_-_37384151 BC040851 NM_001135651 NM_002759	-41057	-	TSC_hg19_v1_chr2_-_37458740 M37197 AK312322 NM_005760 BC034475	33409	-	NM_001083946 NM_144736 TSC_hg19_v1_chr2_+_37458800 AK303555 AK299015 BC065206 BC004548	33471	+	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	33527	+	BC065768|LOC100505876|100505876|uncharacterized LOC100505876##AK001814|LOC100505876|100505876|uncharacterized LOC100505876##BC140797|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##BC144573|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##BC144574|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##NM_001032377|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##BC040851|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135651|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_002759|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##M37197|CEBPZ|10153|CCAAT/enhancer binding protein (C/EBP), zeta##AK312322|CEBPZ|10153|CCAAT/enhancer binding protein (C/EBP), zeta##NM_005760|CEBPZ|10153|CCAAT/enhancer binding protein (C/EBP), zeta##BC034475|CEBPZ|10153|CCAAT/enhancer binding protein (C/EBP), zeta##NM_001083946|C2orf56|55471|chromosome 2 open reading frame 56##NM_144736|C2orf56|55471|chromosome 2 open reading frame 56##AK303555|C2orf56|55471|chromosome 2 open reading frame 56##AK299015|C2orf56|55471|chromosome 2 open reading frame 56##BC065206|C2orf56|55471|chromosome 2 open reading frame 56##BC004548|C2orf56|55471|chromosome 2 open reading frame 56##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56	0.975683	0.0	denovo_WM_7:-1:0.808
chr19	2900313	2900418	reg1005159.p1	5.896	+	AK021699 AK225297 NM_024967 BC009374	-33023	+	NM_001172775 NM_152791 AK093163 AX747966 AL832140 BX647423 BC022022 AK292954	-58907	+	TSC_hg19_v1_chr19_+_2819942 BC000113 CU690506	-80360	+	EF534355 NM_173480 TSC_hg19_v1_chr19_+_2900954 BX537601 BC028974 AK314848	570	+	TSC_hg19_v1_chr19_-_2944927 AK290979 BC043354 BC062561 NM_021217	44578	-	TSC_hg19_v1_chr19_+_2977532 NM_001143986 NM_024760 AK024071 BC013986 BC020206 BC007329 BC068052	77201	+	AK021699|ZNF556|80032|zinc finger protein 556##AK225297|ZNF556|80032|zinc finger protein 556##NM_024967|ZNF556|80032|zinc finger protein 556##BC009374|ZNF556|80032|zinc finger protein 556##NM_001172775|ZNF555|148254|zinc finger protein 555##NM_152791|ZNF555|148254|zinc finger protein 555##AK093163|ZNF555|148254|zinc finger protein 555##AL832140|ZNF555|148254|zinc finger protein 555##BX647423|ZNF555|148254|zinc finger protein 555##BC022022|ZNF555|148254|zinc finger protein 555##AK292954|ZNF555|148254|zinc finger protein 555##BC000113|ZNF554|115196|zinc finger protein 554##EF534355|ZNF57|126295|zinc finger protein 57##NM_173480|ZNF57|126295|zinc finger protein 57##BX537601|ZNF57|126295|zinc finger protein 57##BC028974|ZNF57|126295|zinc finger protein 57##AK314848|ZNF57|126295|zinc finger protein 57##AK290979|ZNF77|58492|zinc finger protein 77##BC043354|ZNF77|58492|zinc finger protein 77##BC062561|ZNF77|58492|zinc finger protein 77##NM_021217|ZNF77|58492|zinc finger protein 77##NM_001143986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##NM_024760|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##AK024071|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC013986|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC020206|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC007329|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)##BC068052|TLE6|79816|transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila)	1.963611	0.011282	denovo_WM_7:-59:0.856	denovo_WM_7:-74:0.858
chr12	65124131	65124287	reg1007501.p1	5.895	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-119948	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-278316	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-320431	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	28888	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	28950	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	28975	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	1.67258	0.0	denovo_WM_7:-60:0.657
chr13	43814598	43814727	reg1008281.p1	5.895	+	BC010910 AY512565 TSC_hg19_v1_chr13_+_43597741 AK311866 BC095400	-216960	+	AF126743 AY248898 NM_013238	-217313	+	CU692822 DQ892268 DQ895469 TSC_hg19_v1_chr13_-_43566378 AL831953 AF396928 BC023660 AK313877 AK292461 NM_001002264 NM_033255	-248292	-	BC024178 NM_001127615	388948	-	TSC_hg19_v1_chr13_-_44361107 BC068521 NM_001242863 NM_017993	546421	-	NM_001128303	638757	+	BC010910|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY512565|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AK311866|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##BC095400|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AF126743|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##AY248898|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##NM_013238|DNAJC15|29103|DnaJ (Hsp40) homolog, subfamily C, member 15##DQ892268|EPSTI1|94240|epithelial stromal interaction 1 (breast)##DQ895469|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AL831953|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AF396928|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC023660|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK313877|EPSTI1|94240|epithelial stromal interaction 1 (breast)##AK292461|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_001002264|EPSTI1|94240|epithelial stromal interaction 1 (breast)##NM_033255|EPSTI1|94240|epithelial stromal interaction 1 (breast)##BC024178|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001127615|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##BC068521|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001242863|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_017993|ENOX1|55068|ecto-NOX disulfide-thiol exchanger 1##NM_001128303|LACC1|144811|laccase (multicopper oxidoreductase) domain containing 1	0.263925	0.0	denovo_WM_7:45:0.219
chr18	56212385	56212543	reg1008269.p2	5.895	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-323614	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-323661	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-323702	+	BX647796 NM_052947	83724	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	126177	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	126264	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.995628	0.0	denovo_WM_7:-1:0.841
chr3	149248604	149248743	reg1007873.p2	5.895	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-56184	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-56271	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-153131	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	127062	-	AK022036 NM_001168278	172386	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	221566	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.99535	0.0	denovo_WM_7:59:0.982
chr5	81364688	81364798	reg1007056.p1	5.894	+	TSC_hg19_v1_chr5_+_81268100 AL136912	-96645	+	AF318326 TSC_hg19_v1_chr5_+_81267992	-96753	+	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	-96898	+	D14530 TSC_hg19_v1_chr5_-_81574174 AK291132 AK311772 D28396 BC070221	209428	-	TSC_hg19_v1_chr5_-_81574219 NM_001025	209476	-	BC093982 BC112191 NM_001017971	236422	+	AL136912|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AF318326|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##D14530|RPS23|6228|ribosomal protein S23##AK291132|RPS23|6228|ribosomal protein S23##AK311772|RPS23|6228|ribosomal protein S23##D28396|RPS23|6228|ribosomal protein S23##BC070221|RPS23|6228|ribosomal protein S23##NM_001025|RPS23|6228|ribosomal protein S23##BC093982|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC112191|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001017971|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like	0.967879	0.0	denovo_WM_7:2:0.331	denovo_WM_7:6:0.481
chr2	207142397	207142522	reg1007698.p1	5.893	+	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	-2992	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	-59761	-	TSC_hg19_v1_chr2_+_207024617 AK291910 AK310096 D28350 BC067787 BC029316 BC004931 AB529032 CU688340 BT007079 CR456825	-117801	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	165874	+	AK129906 TSC_hg19_v1_chr2_+_207406857	264377	+	NM_001102659	364682	+	AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK291910|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK310096|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##D28350|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC067787|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC029316|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC004931|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BT007079|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##CR456825|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23##AK129906|ADAM23|8745|ADAM metallopeptidase domain 23##NM_001102659|LOC200726|200726|hCG1657980	0.998619	0.0	denovo_WM_7:2:0.457	denovo_WM_7:3:0.457
chr21	44834599	44834720	reg1005625.p1	5.892	+	NM_000394 U05569 BC069528 BC113598 X14789 CU686888 HQ258067 CR407691 U66584	-245485	+	TSC_hg19_v1_chr21_-_44527681 NM_001025203 NM_001025204 NM_006758	-306975	-	AB451244 AB528900 TSC_hg19_v1_chr21_-_44527638 BC001177 BC001923 AJ627978 AL832665 BC005915 M96982 AK307560	-307034	-	TSC_hg19_v1_chr21_-_44845958 AK131076 CU691580 DQ892466 DQ895679	11330	-	TSC_hg19_v1_chr21_-_44847012 AB047786 NM_173354 BC038504	12336	-	TSC_hg19_v1_chr21_-_45079376 BC000153 AK314121 AB007131 NM_007031	244703	-	NM_000394|CRYAA|1409|crystallin, alpha A##U05569|CRYAA|1409|crystallin, alpha A##BC069528|CRYAA|1409|crystallin, alpha A##BC113598|CRYAA|1409|crystallin, alpha A##X14789|CRYAA|1409|crystallin, alpha A##HQ258067|CRYAA|1409|crystallin, alpha A##CR407691|CRYAA|1409|crystallin, alpha A##U66584|CRYAA|1409|crystallin, alpha A##NM_001025203|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##NM_001025204|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##NM_006758|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AB451244|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001177|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001923|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AJ627978|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AL832665|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC005915|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##M96982|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AK307560|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AK131076|SIK1|150094|salt-inducible kinase 1##DQ892466|SIK1|150094|salt-inducible kinase 1##DQ895679|SIK1|150094|salt-inducible kinase 1##AB047786|SIK1|150094|salt-inducible kinase 1##NM_173354|SIK1|150094|salt-inducible kinase 1##BC038504|SIK1|150094|salt-inducible kinase 1##BC000153|HSF2BP|11077|heat shock transcription factor 2 binding protein##AK314121|HSF2BP|11077|heat shock transcription factor 2 binding protein##AB007131|HSF2BP|11077|heat shock transcription factor 2 binding protein##NM_007031|HSF2BP|11077|heat shock transcription factor 2 binding protein	1.055887	0.0	denovo_WM_7:30:0.984
chr9	39464562	39464687	reg1007509.p1	5.892	+	AK302569 NM_001040065 NM_001085452 BC146855	-108939	+	AB385498 AK294281 AB051501 BC132737 BC144130 AK056833 NM_033655	-176444	-	TSC_hg19_v1_chr9_-_38620602 BC056266	-844001	-	AK302569 NM_001040065 NM_001085452 BC146855	420337	+	NM_001083124	1235666	+	AK057375 AK292150 NM_033160	1327462	-	AK302569|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001040065|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001085452|FAM75A1|647060|family with sequence similarity 75, member A1##BC146855|FAM75A2|642265|family with sequence similarity 75, member A2##AK294281|CNTNAP3|79937|contactin associated protein-like 3##AB051501|CNTNAP3|79937|contactin associated protein-like 3##BC132737|CNTNAP3|79937|contactin associated protein-like 3##BC144130|CNTNAP3|79937|contactin associated protein-like 3##AK056833|CNTNAP3|79937|contactin associated protein-like 3##NM_033655|CNTNAP3|79937|contactin associated protein-like 3##BC056266|ANKRD18A|253650|ankyrin repeat domain 18A##AK302569|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001040065|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001085452|FAM75A1|647060|family with sequence similarity 75, member A1##BC146855|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001083124|FAM75A3|727830|family with sequence similarity 75, member A3##AK057375|ZNF658|26149|zinc finger protein 658##AK292150|ZNF658|26149|zinc finger protein 658##NM_033160|ZNF658|26149|zinc finger protein 658	0.0	0.0	
chr18	61616269	61616424	reg1007397.p2	5.891	+	BC096217 BC096218 BC096219 BC096220 NM_005024 U35459	-33602	+	TSC_hg19_v1_chr18_+_61575223 AK314936	-41132	+	AK313159 BC012609 NM_001143818 NM_002575 Y00630 J02685 J03603 M18082	-61383	+	NM_001123366	241	+	NM_001031848 NM_002640 NM_198833 AK300391 L40377 TSC_hg19_v1_chr18_+_61637345 BC034528 U92984 BX571754 AK313782	20967	+	AJ007611 NM_033646	1801141	+	BC096217|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096218|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096219|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096220|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_005024|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##U35459|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##AK314936|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##AK313159|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##BC012609|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##NM_001143818|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##NM_002575|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##Y00630|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##J02685|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##J03603|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##M18082|SERPINB2|5055|serpin peptidase inhibitor, clade B (ovalbumin), member 2##NM_001123366|HMSD|284293|histocompatibility (minor) serpin domain containing##NM_001031848|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_002640|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_198833|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK300391|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##L40377|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BC034528|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##U92984|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BX571754|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK313782|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AJ007611|CDH7|1005|cadherin 7, type 2##NM_033646|CDH7|1005|cadherin 7, type 2	0.991862	0.0	denovo_WM_7:-38:0.590	denovo_WM_7:-39:0.375
chr8	134522344	134522447	reg1006869.p1	5.891	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-212898	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-319065	+	NM_001045556 NM_001045557	-407086	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	61702	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1186399	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1202684	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.995448	0.0	
chr10	103669146	103669326	reg1008267.p3	5.890	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-65629	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-69624	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-91018	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	146676	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	155906	+	AK300588 TSC_hg19_v1_chr10_-_103874641	205383	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	1.994579	0.0	denovo_WM_7:-55:0.449	denovo_WM_7:-56:0.449
chr12	111017809	111017949	reg1007639.p2	5.890	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-77804	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-77969	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-111210	+	TSC_hg19_v1_chr12_-_111020755 AY357944	2914	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	3191	-	AK124744 TSC_hg19_v1_chr12_-_111021124	3247	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	1.008934	0.0	denovo_WM_7:-33:0.901
chr3	185017808	185017988	reg1006573.p1	5.890	+	TSC_hg19_v1_chr3_+_185000783 NM_001242314 NM_001242317 AK297646 BC036593 AK312714 BC015996	-17149	+	BC038948 BC110460 L07077 AK301521 TSC_hg19_v1_chr3_-_184971838 AK223460 AK291798 BC011030 BC030982 NM_001166415 NM_001966	-46048	-	TSC_hg19_v1_chr3_-_184870849 AK091454 AX746993 NM_001025266	-147100	-	AK302951 TSC_hg19_v1_chr3_+_185046682 BC031677	28793	+	BC026249 NM_004721 AK296961 AB001872 BC111726	63034	+	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	198801	-	NM_001242314|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_001242317|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK297646|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC036593|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK312714|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC015996|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC038948|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC110460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##L07077|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK301521|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK223460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK291798|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC011030|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC030982|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001166415|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001966|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001025266|C3orf70|285382|chromosome 3 open reading frame 70##AK302951|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC031677|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A	0.989957	0.0	denovo_WM_7:87:0.229	denovo_WM_7:88:0.229	denovo_WM_7:89:0.230	denovo_WM_7:90:0.230
chr6	64375312	64375474	reg1005994.p1	5.890	+	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-18951	+	TSC_hg19_v1_chr6_+_64346027 BX648268 AK290491	-29376	+	TSC_hg19_v1_chr6_+_64345729 AK315868 AK298580	-29570	+	AY358133 NM_198283 AK310478	1914312	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	2041700	-	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	4223635	-	AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##BX648268|PHF3|23469|PHD finger protein 3##AK290491|PHF3|23469|PHD finger protein 3##AK315868|PHF3|23469|PHD finger protein 3##AK298580|PHF3|23469|PHD finger protein 3##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3	1.074112	0.0	denovo_WM_7:2:0.233	denovo_WM_7:3:0.233	denovo_WM_7:4:0.244	denovo_WM_7:5:0.261
chr12	12764651	12764783	reg1007623.p2	5.889	+	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	-49317	-	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-254552	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-261545	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	78	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	166	+	AK096388 NM_006143	84403	-	AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19	0.0	0.0	
chr19	4829607	4829764	reg1005151.p1	5.889	+	AF070530 TSC_hg19_v1_chr19_-_4817612	-12127	-	TSC_hg19_v1_chr19_+_4791757 AK074232 BC004988 AY356352 EU446817 AB384759 AJ311359	-37873	+	AK126532 AK315554 TSC_hg19_v1_chr19_+_4791756	-37929	+	TSC_hg19_v1_chr19_-_4831725 BC035331 NM_182919	2040	-	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	37960	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	37980	-	AF070530|TICAM1|148022|toll-like receptor adaptor molecule 1##AK074232|FEM1A|55527|fem-1 homolog a (C. elegans)##BC004988|FEM1A|55527|fem-1 homolog a (C. elegans)##AY356352|FEM1A|55527|fem-1 homolog a (C. elegans)##EU446817|FEM1A|55527|fem-1 homolog a (C. elegans)##AJ311359|FEM1A|55527|fem-1 homolog a (C. elegans)##AK126532|FEM1A|55527|fem-1 homolog a (C. elegans)##AK315554|FEM1A|55527|fem-1 homolog a (C. elegans)##BC035331|TICAM1|148022|toll-like receptor adaptor molecule 1##NM_182919|TICAM1|148022|toll-like receptor adaptor molecule 1##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3	0.0	0.0	
chr4	70201259	70201410	reg1008369.p1	5.889	+	AF177272 AF177273 AF177274 NM_001207004 NM_053039 AB451456	-55117	+	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	-120877	-	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	-239120	+	AY529122 DQ895203 AF064200 AF081793 AJ005162 Y00317 BC026264 TSC_hg19_v1_chr4_-_70361624 AK292748 NM_021139	160268	-	FJ664272 FJ664273 NM_001105677	304025	-	AK314209 AK304249 NM_001252274 NM_001252275 NM_006798	317631	-	AF177272|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177273|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177274|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_001207004|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_053039|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AB451456|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AY529122|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##DQ895203|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AF064200|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AF081793|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AJ005162|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##Y00317|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##BC026264|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##AK292748|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##NM_021139|UGT2B4|7363|UDP glucuronosyltransferase 2 family, polypeptide B4##FJ664272|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##FJ664273|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##NM_001105677|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##AK314209|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##AK304249|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_001252274|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_001252275|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_006798|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus	0.914966	0.0	denovo_WM_7:-1:0.915
chr7	125875459	125875581	reg1004600.p1	5.889	+	NM_001042594 NM_015450	-1305484	-	BC130600 BC130604 NM_001024603	-1444718	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1469724	-	NM_000845	1008048	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	1016845	-	TSC_hg19_v1_chr7_-_126893165 AK290197	1017632	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	2.959303	0.0	denovo_WM_7:66:0.477	denovo_WM_7:67:0.239	denovo_WM_7:81:0.291	denovo_WM_7:82:0.353	denovo_WM_7:83:0.257	denovo_WM_7:97:0.294	denovo_WM_7:98:0.549
chr1	147533147	147533327	reg1007780.p2	5.887	+	NM_001097616	-107671	+	TSC_hg19_v1_chr1_+_147400563 BC146880 AK316371 BC003187 AB528816 DQ890650 DQ893830 BT006679	-132636	+	TSC_hg19_v1_chr1_+_147400532 AK021758 NM_016334 AL133020 AY358966 AB097024 AB097025 AK223223 AK299995 AK302266 BC067816 AF132947 U78723	-132715	+	AF419617 NM_001101663	76843	-	BX648497 TSC_hg19_v1_chr1_-_147624379	91108	-	TSC_hg19_v1_chr1_-_147624593 BC136292 NM_183372	91279	-	NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BT006679|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##NM_016334|GPR89B|51463|G protein-coupled receptor 89B##AL133020|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##BX648497|NBPF11|200030|neuroblastoma breakpoint family, member 11##BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11	0.997808	0.0	
chr3	189483107	189483270	reg1007912.p2	5.887	+	BC039815 NM_001114978 NM_001114979 NM_003722 AB016072 AB016073 AF116771 Y16961 CU691766 EU446669	-133929	+	AK125682 NM_198485 BC101550 BC101552	-593377	+	TSC_hg19_v1_chr3_+_188664993 AK123232	-818218	+	AK304127 NM_001114980 NM_001114981 NM_001114982 GQ202689 GQ202690 AF091627 AB010153 AB042841 AF075429 AF075431 AF075433	24330	+	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	355507	-	NM_018192	355719	-	BC039815|TP63|8626|tumor protein p63##NM_001114978|TP63|8626|tumor protein p63##NM_001114979|TP63|8626|tumor protein p63##NM_003722|TP63|8626|tumor protein p63##AB016072|TP63|8626|tumor protein p63##AB016073|TP63|8626|tumor protein p63##AF116771|TP63|8626|tumor protein p63##Y16961|TP63|8626|tumor protein p63##EU446669|TP63|8626|tumor protein p63##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1##AK123232|TPRG1|285386|tumor protein p63 regulated 1##AK304127|TP63|8626|tumor protein p63##NM_001114980|TP63|8626|tumor protein p63##NM_001114981|TP63|8626|tumor protein p63##NM_001114982|TP63|8626|tumor protein p63##GQ202689|TP63|8626|tumor protein p63##GQ202690|TP63|8626|tumor protein p63##AF091627|TP63|8626|tumor protein p63##AB010153|TP63|8626|tumor protein p63##AB042841|TP63|8626|tumor protein p63##AF075429|TP63|8626|tumor protein p63##AF075431|TP63|8626|tumor protein p63##AF075433|TP63|8626|tumor protein p63##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1	0.999537	0.0	
chrX	118663436	118663559	reg1007757.p1	5.887	+	TSC_hg19_v1_chrX_+_118602407 BC068199 J02683 BC056160 CU691128	-61063	+	NM_001152 TSC_hg19_v1_chrX_+_118602390 AK315292	-61121	+	TSC_hg19_v1_chrX_+_118533353 AK091304 AK303932 AX746905 AK292035 CU676444 AL590525	-130091	+	CU692786 TSC_hg19_v1_chrX_-_118699348 AK096297 BC023506 AK026618 AK298877 NM_001170569	35847	-	TSC_hg19_v1_chrX_-_118699373 NM_001170570 NM_022101	35887	-	TSC_hg19_v1_chrX_+_118708527 AK301675 NM_003336 NM_181762 D28459 AK313092 AK223045 AK297696 AK223064	45008	+	BC068199|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##J02683|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##BC056160|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##NM_001152|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK315292|SLC25A5|292|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5##AK091304|SLC25A43|203427|solute carrier family 25, member 43##AK303932|SLC25A43|203427|solute carrier family 25, member 43##AK292035|SLC25A43|203427|solute carrier family 25, member 43##AL590525|SLC25A43|203427|solute carrier family 25, member 43##AK096297|CXorf56|63932|chromosome X open reading frame 56##BC023506|CXorf56|63932|chromosome X open reading frame 56##AK026618|CXorf56|63932|chromosome X open reading frame 56##AK298877|CXorf56|63932|chromosome X open reading frame 56##NM_001170569|CXorf56|63932|chromosome X open reading frame 56##NM_001170570|CXorf56|63932|chromosome X open reading frame 56##NM_022101|CXorf56|63932|chromosome X open reading frame 56##AK301675|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_003336|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181762|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D28459|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK313092|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223045|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK297696|UBE2A|7319|ubiquitin-conjugating enzyme E2A##AK223064|UBE2A|7319|ubiquitin-conjugating enzyme E2A	0.996918	0.0	
chr6	37818796	37818914	reg1006308.p1	5.886	+	TSC_hg19_v1_chr6_+_37787655 AK023284 BC031481 DQ891133 DQ894312	-31165	+	TSC_hg19_v1_chr6_+_37787274 NM_021943	-31565	+	TSC_hg19_v1_chr6_-_37665660 AF478693 NM_153487	-153149	-	BC101354 BC101355 BC101356 BC101357 AK057507 NM_001172418 NM_152733	744947	-	AB067467 TSC_hg19_v1_chr6_-_38607611	788750	-	TSC_hg19_v1_chr6_-_38607697 BX537534	788811	-	AK023284|ZFAND3|60685|zinc finger, AN1-type domain 3##BC031481|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ891133|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ894312|ZFAND3|60685|zinc finger, AN1-type domain 3##NM_021943|ZFAND3|60685|zinc finger, AN1-type domain 3##AF478693|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_153487|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##BC101354|BTBD9|114781|BTB (POZ) domain containing 9##BC101355|BTBD9|114781|BTB (POZ) domain containing 9##BC101356|BTBD9|114781|BTB (POZ) domain containing 9##BC101357|BTBD9|114781|BTB (POZ) domain containing 9##AK057507|BTBD9|114781|BTB (POZ) domain containing 9##NM_001172418|BTBD9|114781|BTB (POZ) domain containing 9##NM_152733|BTBD9|114781|BTB (POZ) domain containing 9##AB067467|BTBD9|114781|BTB (POZ) domain containing 9##BX537534|BTBD9|114781|BTB (POZ) domain containing 9	1.973774	0.0	denovo_WM_7:-27:0.449	denovo_WM_7:76:0.880
chr8	81949138	81949296	reg1006727.p1	5.886	+	AK131274 NM_001033723	-162202	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-550733	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-865447	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	75097	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	243556	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	410452	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.921984	0.019722	denovo_WM_7:-24:0.775
chr4	140159220	140159339	reg1006586.p1	5.885	+	TSC_hg19_v1_chr4_-_140098351 AK311505	-60942	-	U43188 NM_201999	-98676	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	-153668	-	BC037987 BC104173 BC104174 AF329088 AF484960 NM_032623	42136	-	CR457005 AF047184 TSC_hg19_v1_chr4_-_140216970 AF047435 AK291147 BC101798 BC112061	57694	-	BC107682 NM_001184986 NM_001184991 NM_002494	63093	-	U43188|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_201999|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC037987|C4orf49|84709|chromosome 4 open reading frame 49##BC104173|C4orf49|84709|chromosome 4 open reading frame 49##BC104174|C4orf49|84709|chromosome 4 open reading frame 49##AF329088|C4orf49|84709|chromosome 4 open reading frame 49##AF484960|C4orf49|84709|chromosome 4 open reading frame 49##NM_032623|C4orf49|84709|chromosome 4 open reading frame 49##CR457005|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AF047184|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AF047435|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##AK291147|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##BC101798|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##BC112061|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##BC107682|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184986|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_001184991|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa##NM_002494|NDUFC1|4717|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa	0.996747	0.0	denovo_WM_7:-12:0.449	denovo_WM_7:-13:0.449
chr12	46064398	46064556	reg1007349.p2	5.884	+	AL832340 NM_001142678	-378012	+	TSC_hg19_v1_chr12_+_45609916 BC098410	-454570	+	TSC_hg19_v1_chr12_+_45609867 AK302819 NM_001142680	-454606	+	TSC_hg19_v1_chr12_-_46121280 BC037237 BC008245	56796	-	TSC_hg19_v1_chr12_-_46121531 BC047417	57053	-	TSC_hg19_v1_chr12_+_46123488 AK127872	59006	+	AL832340|ANO6|196527|anoctamin 6##NM_001142678|ANO6|196527|anoctamin 6##BC098410|ANO6|196527|anoctamin 6##AK302819|ANO6|196527|anoctamin 6##NM_001142680|ANO6|196527|anoctamin 6##BC037237|LOC400027|400027|uncharacterized LOC400027##BC008245|LOC400027|400027|uncharacterized LOC400027##BC047417|LOC400027|400027|uncharacterized LOC400027##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)	1.754137	0.0	denovo_WM_7:9:0.504
chr16	46923113	46923278	reg1008446.p2	5.884	+	NM_001142466 AK094971	-4093	+	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	-4914	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	-58107	-	TSC_hg19_v1_chr16_-_47005340 Y13350	82153	-	CU677459 AF011793 AJ001309 TSC_hg19_v1_chr16_-_47007561	84327	-	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	84400	-	NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##Y13350|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AJ001309|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2	1.119391	0.0	
chr5	106599515	106599643	reg1006958.p1	5.884	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3701098	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4005122	+	BC024591 NM_015216 AB463068	-4134305	+	AK308672 NM_001962 U26403	407011	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1117551	-	BC063316 NM_001163315	1118219	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.0	0.0	
chr12	49370378	49370480	reg1007095.p1	5.883	+	U81787 NM_003394 AK312906	-4831	-	TSC_hg19_v1_chr12_-_49351310 M74491	-19125	-	TSC_hg19_v1_chr12_-_49351269 AK300080	-19163	-	NM_005430	1806	+	AB527129 AB018292 BC136398 BC136399 TSC_hg19_v1_chr12_-_49393076 NM_015086 BC039264	22571	-	TSC_hg19_v1_chr12_-_49412538 AK293332 NM_001206710 AK303276 AK307994 AK310250 BC000358 AK097606 NM_001206709 NM_002733	42142	-	U81787|WNT10B|7480|wingless-type MMTV integration site family, member 10B##NM_003394|WNT10B|7480|wingless-type MMTV integration site family, member 10B##AK312906|WNT10B|7480|wingless-type MMTV integration site family, member 10B##M74491|ARF3|377|ADP-ribosylation factor 3##NM_005430|WNT1|7471|wingless-type MMTV integration site family, member 1##AB018292|DDN|23109|dendrin##BC136398|DDN|23109|dendrin##BC136399|DDN|23109|dendrin##NM_015086|DDN|23109|dendrin##BC039264|DDN|23109|dendrin##AK293332|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##NM_001206710|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK303276|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK307994|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK310250|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##BC000358|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK097606|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##NM_001206709|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##NM_002733|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	0.996896	0.0	denovo_WM_7:35:0.793
chr14	94596547	94596663	reg1006774.p1	5.883	+	TSC_hg19_v1_chr14_-_94595942 NM_032036	-665	-	BC032626 TSC_hg19_v1_chr14_-_94595922 AF208232	-687	-	NM_001130080 NM_005532 TSC_hg19_v1_chr14_+_94577081 AK289535 AK097084 AK312089 BX647330 AJ294851 AY126456 AY126457 AY126458 BC015492	-19486	+	NM_020958 NM_058237 BC002650 BC068491 AB046842 AB385489 CU686649	44119	+	AF181467 NM_016186	162755	-	TSC_hg19_v1_chr14_-_94759564 AY358597 AK314877	162957	-	NM_032036|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##BC032626|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##AF208232|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##NM_001130080|IFI27|3429|interferon, alpha-inducible protein 27##NM_005532|IFI27|3429|interferon, alpha-inducible protein 27##AK289535|IFI27|3429|interferon, alpha-inducible protein 27##AK097084|IFI27|3429|interferon, alpha-inducible protein 27##AK312089|IFI27|3429|interferon, alpha-inducible protein 27##BX647330|IFI27|3429|interferon, alpha-inducible protein 27##AJ294851|IFI27|3429|interferon, alpha-inducible protein 27##AY126456|IFI27|3429|interferon, alpha-inducible protein 27##AY126457|IFI27|3429|interferon, alpha-inducible protein 27##AY126458|IFI27|3429|interferon, alpha-inducible protein 27##BC015492|IFI27|3429|interferon, alpha-inducible protein 27##NM_020958|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##NM_058237|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##BC002650|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##BC068491|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##AB046842|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##AF181467|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##NM_016186|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##AY358597|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##AK314877|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	0.0	0.0	
chr2	54907168	54907333	reg1008339.p1	5.883	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-121685	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-222883	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-223638	+	NM_001039753	44898	+	TSC_hg19_v1_chr2_-_55199899 BC131571	292658	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	330122	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	1.343308	0.0	denovo_WM_7:24:0.298	denovo_WM_7:25:0.298	denovo_WM_7:26:0.298	denovo_WM_7:98:0.344
chr16	85970070	85970199	reg1004061.p2	5.882	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-37348	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-136799	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-136829	+	TSC_hg19_v1_chr16_-_86542463 AK091834	572330	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	574022	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	574106	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.981606	0.0	denovo_WM_7:-25:0.982
chr2	42865404	42865584	reg1004146.p2	5.882	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-69597	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-69773	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-143792	+	AY158687 AB528920 AB083055 BC063549 NM_148962	125806	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	154257	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	587851	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.990321	0.0	denovo_WM_7:43:0.919
chr15	29598759	29598865	reg1005701.p1	5.881	+	TSC_hg19_v1_chr15_-_29562011 AK056957 AF490510 NM_138704	-36783	-	TSC_hg19_v1_chr15_-_29561989 BC041166 BC053999 BC035458	-36842	-	NM_001130414 NM_005503 AF047348 BC082986	-384963	+	NM_015307	264114	-	AK304758 TSC_hg19_v1_chr15_-_30114336	515530	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	515811	-	AK056957|NDNL2|56160|necdin-like 2##AF490510|NDNL2|56160|necdin-like 2##NM_138704|NDNL2|56160|necdin-like 2##BC041166|NDNL2|56160|necdin-like 2##BC053999|NDNL2|56160|necdin-like 2##BC035458|NDNL2|56160|necdin-like 2##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)	1.995564	0.0	
chr16	88674689	88674782	reg1005805.p1	5.881	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-37866	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	-37907	+	AK300254 AK302716 TSC_hg19_v1_chr16_+_88636810	-37925	+	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	30268	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	42714	-	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	54782	-	BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18##AK300254|ZC3H18|124245|zinc finger CCCH-type containing 18##AK302716|ZC3H18|124245|zinc finger CCCH-type containing 18##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase	0.985499	0.0	denovo_WM_7:35:0.940
chr1	97307896	97308004	reg1008256.p2	5.881	+	BC030757 TSC_hg19_v1_chr1_+_97260652	-47367	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-120666	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-162754	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	1078539	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	1078609	-	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	1078656	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase	0.998943	0.0	denovo_WM_7:-31:0.518	denovo_WM_7:-32:0.462
chr20	48311556	48311659	reg1005774.p1	5.881	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-126918	-	BC110572 BC110573 NM_004975	-212428	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-416412	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	18623	-	AB004550 TSC_hg19_v1_chr20_-_48330359	18749	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	18859	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.996225	0.0	denovo_WM_7:35:0.815
chr16	10423723	10423903	reg1000553.p2	5.880	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-147136	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-147625	-	BC143273 U09002 NM_001134408	-147980	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	56104	+	NM_024997 BC137079 BC144468	98927	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	250677	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	1.711479	0.0	denovo_WM_7:98:0.692
chr17	19022221	19022382	reg1005098.p1	5.879	+	BT019981 CR541941 CR541966 AB528891 CU687638 BC035856 U52518 BC063035 NM_006613	-72015	-	TSC_hg19_v1_chr17_-_18908078 NM_001039999	-114222	-	AK057946 NM_001042450 NM_152351 AK298345 BC062617 BC034380	-166797	+	BC157869 NM_001129778	8480	+	TSC_hg19_v1_chr17_+_19140720 NM_001102664 NM_014964 NM_148921 AK092366 AK024115 AB028988 BC070036 AK295652 AK298006 AK307455 BC015488	118407	+	CU678304 TSC_hg19_v1_chr17_-_19265911 BC002944 AK293815 AB030506 AK297782 NM_001243473 NM_015681	243668	-	BT019981|GRAP|10750|GRB2-related adaptor protein##CR541941|GRAP|10750|GRB2-related adaptor protein##CR541966|GRAP|10750|GRB2-related adaptor protein##BC035856|GRAP|10750|GRB2-related adaptor protein##U52518|GRAP|10750|GRB2-related adaptor protein##BC063035|GRAP|10750|GRB2-related adaptor protein##NM_006613|GRAP|10750|GRB2-related adaptor protein##NM_001039999|FAM83G|644815|family with sequence similarity 83, member G##AK057946|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001042450|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_152351|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##AK298345|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC062617|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC034380|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC157869|GRAPL|400581|GRB2-related adaptor protein-like##NM_001129778|GRAPL|400581|GRB2-related adaptor protein-like##NM_001102664|EPN2|22905|epsin 2##NM_014964|EPN2|22905|epsin 2##NM_148921|EPN2|22905|epsin 2##AK092366|EPN2|22905|epsin 2##AK024115|EPN2|22905|epsin 2##AB028988|EPN2|22905|epsin 2##BC070036|EPN2|22905|epsin 2##AK295652|EPN2|22905|epsin 2##AK298006|EPN2|22905|epsin 2##AK307455|EPN2|22905|epsin 2##BC015488|EPN2|22905|epsin 2##BC002944|B9D1|27077|B9 protein domain 1##AK293815|B9D1|27077|B9 protein domain 1##AB030506|B9D1|27077|B9 protein domain 1##AK297782|B9D1|27077|B9 protein domain 1##NM_001243473|B9D1|27077|B9 protein domain 1##NM_015681|B9D1|27077|B9 protein domain 1	0.0	0.128176	
chr4	155543882	155544003	reg1008262.p2	5.879	+	TSC_hg19_v1_chr4_-_155533903 NM_000509 NM_021870	-10021	-	AK290824 TSC_hg19_v1_chr4_-_155533868	-10081	-	TSC_hg19_v1_chr4_-_155533809 AK289422 BC021674 BC007044 BX538098	-10134	-	TSC_hg19_v1_chr4_+_155665114 AK292598	121176	+	TSC_hg19_v1_chr4_+_155665151 AY546085 AY546086 NM_004744 AF071510	121274	+	NM_144979 AK302720 BC028588	158520	+	NM_000509|FGG|2266|fibrinogen gamma chain##NM_021870|FGG|2266|fibrinogen gamma chain##AK290824|FGG|2266|fibrinogen gamma chain##AK289422|FGG|2266|fibrinogen gamma chain##BC021674|FGG|2266|fibrinogen gamma chain##BC007044|FGG|2266|fibrinogen gamma chain##BX538098|FGG|2266|fibrinogen gamma chain##AK292598|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AY546085|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AY546086|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##NM_004744|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AF071510|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##NM_144979|RBM46|166863|RNA binding motif protein 46##AK302720|RBM46|166863|RNA binding motif protein 46##BC028588|RBM46|166863|RNA binding motif protein 46	0.990526	0.929692	denovo_WM_7:-35:0.237	denovo_WM_7:-36:0.237	denovo_WM_7:-37:0.237	denovo_WM_7:-38:0.237	CTCF.p2:48:0.930
chr9	41609580	41609704	reg1007333.p1	5.879	+	BC040528 NM_001113541 NM_015667	-108964	+	BC040528 NM_001113541 NM_015667 NM_001242613	-282263	-	AK057375 AK292150 NM_033160	-817556	-	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	345272	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	758716	+	NM_001099279 NM_199244	1107591	+	BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AK057375|ZNF658|26149|zinc finger protein 658##AK292150|ZNF658|26149|zinc finger protein 658##NM_033160|ZNF658|26149|zinc finger protein 658##BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.0	0.0	
chr15	63884460	63884634	reg1007947.p1	5.878	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	-87670	+	TSC_hg19_v1_chr15_+_63796791 AK314223	-87765	+	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	-210472	-	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	5032	+	BC017581 BC036918 AK093077 TSC_hg19_v1_chr15_-_63893135	8495	-	TSC_hg19_v1_chr15_-_64126081 U50078	241537	-	AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##AK314223|USP3|9960|ubiquitin specific peptidase 3##AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC017581|LOC100130855|100130855|uncharacterized LOC100130855##BC036918|LOC100130855|100130855|uncharacterized LOC100130855##AK093077|LOC100130855|100130855|uncharacterized LOC100130855##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	0.994513	0.0	denovo_WM_7:-4:0.209	denovo_WM_7:-6:0.655
chr15	97244780	97244928	reg1006946.p1	5.878	+	NM_001145157	-368286	+	AK316086 NM_001145156	-369061	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	-370877	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	81818	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1259065	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	1259097	+	NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4	1.022255	0.018021	denovo_WM_7:-7:0.450
chr4	146728540	146728661	reg1002199.p1	5.878	+	NM_001080531	-127245	+	TSC_hg19_v1_chr4_+_146540536 AK126662 NM_172250	-188054	+	U59912 NM_001003688 U54826 AK293055	-324642	+	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	131077	-	BC033879 TSC_hg19_v1_chr4_-_146859976	131368	-	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	368267	+	NM_001080531|C4orf51|646603|chromosome 4 open reading frame 51##AK126662|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##NM_172250|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##U59912|SMAD1|4086|SMAD family member 1##NM_001003688|SMAD1|4086|SMAD family member 1##U54826|SMAD1|4086|SMAD family member 1##AK293055|SMAD1|4086|SMAD family member 1##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.037069	0.0	
chr5	108746183	108746317	reg1004535.p5	5.878	+	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	-629	-	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-661578	+	AK293376 J03358 NM_005246 AK296874	-662688	+	TSC_hg19_v1_chr5_+_109025072 BC031659	278814	+	TSC_hg19_v1_chr5_+_109025096 BC111062	278847	+	TSC_hg19_v1_chr5_+_109025138 NM_002372	278895	+	BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1##NM_002372|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.961588	0.0	denovo_WM_7:43:0.276	denovo_WM_7:44:0.373
chr1	76192372	76192529	reg1006392.p2	5.877	+	AK312629 TSC_hg19_v1_chr1_+_76190445 AK296045 AK311022 M16827 AF251043 DQ892341 DQ895710 CU675151	-1994	+	TSC_hg19_v1_chr1_+_76190393 AK309843 AK311185 AK301039 AK315946 BX647734 BC005377 AK301717	-2045	+	NM_000016 NM_001127328 TSC_hg19_v1_chr1_+_76190106	-2376	+	AK293057 AK128861 BC020790 NM_004582 TSC_hg19_v1_chr1_+_76251940	59463	+	NM_002440 BC033030 U89293 AF104243 AB528458 CU689598 DQ891259 DQ894445	70162	+	AF403035 CU691378 BC022517 AF429968 BC036573 AK098606 NM_080868	205595	-	AK312629|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK296045|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK311022|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##M16827|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AF251043|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##DQ892341|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##DQ895710|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK309843|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK311185|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK301039|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK315946|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##BX647734|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##BC005377|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK301717|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##NM_000016|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##NM_001127328|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK293057|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##AK128861|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##BC020790|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##NM_004582|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##NM_002440|MSH4|4438|mutS homolog 4 (E. coli)##BC033030|MSH4|4438|mutS homolog 4 (E. coli)##U89293|MSH4|4438|mutS homolog 4 (E. coli)##AF104243|MSH4|4438|mutS homolog 4 (E. coli)##DQ891259|MSH4|4438|mutS homolog 4 (E. coli)##DQ894445|MSH4|4438|mutS homolog 4 (E. coli)##AF403035|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC022517|ASB17|127247|ankyrin repeat and SOCS box containing 17##AF429968|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC036573|ASB17|127247|ankyrin repeat and SOCS box containing 17##AK098606|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_080868|ASB17|127247|ankyrin repeat and SOCS box containing 17	0.999554	0.0	
chr20	49186927	49187107	reg1006815.p2	5.877	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	-60012	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-60085	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-60098	+	AK056792 NM_080829	66408	-	TSC_hg19_v1_chr20_-_49308074 AK124347	121060	-	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	161052	+	BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)	0.0	0.0	
chr2	58251034	58251214	reg1006017.p2	5.877	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-1838215	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-1839358	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-1839919	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	22630	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	22864	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	217358	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	0.993792	0.0	denovo_WM_7:0:0.248	denovo_WM_7:0:0.248	denovo_WM_7:-1:0.248	denovo_WM_7:-2:0.248
chr4	30007660	30007789	reg1007719.p2	5.876	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-3145184	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-3422044	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-3515739	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	714275	+	AB006757 TSC_hg19_v1_chr4_+_30722198	714470	+	TSC_hg19_v1_chr4_+_30722465 AB006756	714735	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.157002	0.0	
chr10	27148977	27149132	reg1000338.p2	5.875	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-91237	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-162408	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-162470	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	786	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	885	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	951	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	0.018418	0.0	
chr3	82991421	82991526	reg1008084.p2	5.875	+	BC031255 TSC_hg19_v1_chr3_+_82035308	-956171	+	TSC_hg19_v1_chr3_-_81810971 NM_000158	-1180531	-	TSC_hg19_v1_chr3_-_81810866 AB209731 BC012098	-1180625	-	TSC_hg19_v1_chr3_+_85008139 AB646739 BC105999 NM_001167674 NM_001167675 AK295885 BC063484 AL834270	2016656	+	AF538973 NM_153184	2784158	+	TSC_hg19_v1_chr3_-_87040249 NM_016206	4048778	-	NM_000158|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB209731|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##BC012098|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB646739|CADM2|253559|cell adhesion molecule 2##BC105999|CADM2|253559|cell adhesion molecule 2##NM_001167674|CADM2|253559|cell adhesion molecule 2##NM_001167675|CADM2|253559|cell adhesion molecule 2##AK295885|CADM2|253559|cell adhesion molecule 2##AL834270|CADM2|253559|cell adhesion molecule 2##AF538973|CADM2|253559|cell adhesion molecule 2##NM_153184|CADM2|253559|cell adhesion molecule 2##NM_016206|VGLL3|389136|vestigial like 3 (Drosophila)	0.975709	0.0	denovo_WM_7:16:0.606	denovo_WM_7:17:0.246
chr4	153340660	153340784	reg1008226.p2	5.875	+	NM_001013415 AY008274	-37058	-	AF383178 AK001933 BC037320 AB209725 AB527140 TSC_hg19_v1_chr4_-_153273893 AK315142 BC059373 AK223449 AK299722 AF411972 AY033553 NM_018315	-66826	-	TSC_hg19_v1_chr4_-_152682144 AB019410 AK303461 AK222887 AK225241 AK312957 AF151033 AF026851 BC067838 BC130348 BC136547 NM_004564	-658581	-	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	115572	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	116711	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	260478	-	NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##AF383178|FBXW7|55294|F-box and WD repeat domain containing 7##AK001933|FBXW7|55294|F-box and WD repeat domain containing 7##BC037320|FBXW7|55294|F-box and WD repeat domain containing 7##AB209725|FBXW7|55294|F-box and WD repeat domain containing 7##AK315142|FBXW7|55294|F-box and WD repeat domain containing 7##BC059373|FBXW7|55294|F-box and WD repeat domain containing 7##AK223449|FBXW7|55294|F-box and WD repeat domain containing 7##AK299722|FBXW7|55294|F-box and WD repeat domain containing 7##AF411972|FBXW7|55294|F-box and WD repeat domain containing 7##AY033553|FBXW7|55294|F-box and WD repeat domain containing 7##NM_018315|FBXW7|55294|F-box and WD repeat domain containing 7##AB019410|PET112|5188|PET112 homolog (yeast)##AK303461|PET112|5188|PET112 homolog (yeast)##AK222887|PET112|5188|PET112 homolog (yeast)##AK225241|PET112|5188|PET112 homolog (yeast)##AK312957|PET112|5188|PET112 homolog (yeast)##AF151033|PET112|5188|PET112 homolog (yeast)##AF026851|PET112|5188|PET112 homolog (yeast)##BC067838|PET112|5188|PET112 homolog (yeast)##BC130348|PET112|5188|PET112 homolog (yeast)##BC136547|PET112|5188|PET112 homolog (yeast)##NM_004564|PET112|5188|PET112 homolog (yeast)##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154	0.0	0.0	
chr12	40562789	40562930	reg1005231.p2	5.874	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-62987	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-63170	-	BC038754 NM_001031748 BC048120 AK097445	-542864	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	56000	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	523423	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	1019349	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.028791	0.0	
chr5	124068148	124068290	reg1005121.p1	5.874	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1220337	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1309075	-	NM_001136239 AK297992 AF272898 AF272899	-1643375	+	BC131507 AB033107 BC151226 NM_020747	12569	-	NM_001146319 AK316288 AK300154	1627595	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1690624	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	1.056782	0.0	denovo_WM_7:26:0.449	denovo_WM_7:27:0.450
chr18	48357109	48357270	reg1008138.p2	5.873	+	BC029860 NM_001127174	-5447	-	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	-10824	-	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	-270692	+	TSC_hg19_v1_chr18_+_48405434 NM_001168335 NM_002396	48245	+	TSC_hg19_v1_chr18_+_48405496 BC000147 AK313391 M55905	48354	+	TSC_hg19_v1_chr18_+_48494384 NM_018696	137161	+	BC029860|MRO|83876|maestro##NM_001127174|MRO|83876|maestro##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##NM_001168335|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##NM_002396|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##BC000147|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##AK313391|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##M55905|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##NM_018696|ELAC1|55520|elaC homolog 1 (E. coli)	0.992229	0.0	denovo_WM_7:44:0.786
chr17	35754795	35754915	reg1008421.p1	5.872	+	AK096966 BC034672 NM_173625 CU689930	-21875	+	TSC_hg19_v1_chr17_-_35716040 AB371587 AK309084 AY315621 AY315622 NM_198836	-38803	-	AY315619 AY315620 NM_198837 NM_198838	-98164	-	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	12020	-	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	12107	+	AK022767 NM_001488 NM_133439	12456	+	AK096966|C17orf78|284099|chromosome 17 open reading frame 78##BC034672|C17orf78|284099|chromosome 17 open reading frame 78##NM_173625|C17orf78|284099|chromosome 17 open reading frame 78##AB371587|ACACA|31|acetyl-CoA carboxylase alpha##AK309084|ACACA|31|acetyl-CoA carboxylase alpha##AY315621|ACACA|31|acetyl-CoA carboxylase alpha##AY315622|ACACA|31|acetyl-CoA carboxylase alpha##NM_198836|ACACA|31|acetyl-CoA carboxylase alpha##AY315619|ACACA|31|acetyl-CoA carboxylase alpha##AY315620|ACACA|31|acetyl-CoA carboxylase alpha##NM_198837|ACACA|31|acetyl-CoA carboxylase alpha##NM_198838|ACACA|31|acetyl-CoA carboxylase alpha##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A##AK022767|TADA2A|6871|transcriptional adaptor 2A##NM_001488|TADA2A|6871|transcriptional adaptor 2A##NM_133439|TADA2A|6871|transcriptional adaptor 2A	0.0	0.143476	
chr6	17704746	17704926	reg1003581.p2	5.872	+	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	-104237	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-311054	+	AK055391 NM_153020 BC104808 BC104810 BC040928	-421832	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	2066	-	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	282924	-	TSC_hg19_v1_chr6_-_17987867 BC062673 NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113	283030	-	NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK055391|RBM24|221662|RNA binding motif protein 24##NM_153020|RBM24|221662|RNA binding motif protein 24##BC104808|RBM24|221662|RNA binding motif protein 24##BC104810|RBM24|221662|RNA binding motif protein 24##BC040928|RBM24|221662|RNA binding motif protein 24##Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A##BC062673|KIF13A|63971|kinesin family member 13A##NM_001105566|KIF13A|63971|kinesin family member 13A##NM_001105567|KIF13A|63971|kinesin family member 13A##NM_001105568|KIF13A|63971|kinesin family member 13A##NM_001243423|KIF13A|63971|kinesin family member 13A##NM_022113|KIF13A|63971|kinesin family member 13A	0.0	0.0	
chr15	78731191	78731344	reg1007554.p1	5.871	+	TSC_hg19_v1_chr15_+_78730595 AB209403 BC017880 AK292992 BC117481 BC117483 BC143948 AB586699 HQ258663 M58511	-644	+	TSC_hg19_v1_chr15_+_78730557 NM_004136	-746	+	TSC_hg19_v1_chr15_+_78632694 NM_004378 AB593091 BC022069 S74445 DQ896830 EU176284 CR457017 AL110113	-98564	+	TSC_hg19_v1_chr15_+_78799930 NM_001013619 NM_001083612 AK126453 BC132753 BC144383	68660	+	NM_001102667 NM_001102668 NM_002789 TSC_hg19_v1_chr15_+_78832785 BC005361 AK055714 AK315526	101498	+	TSC_hg19_v1_chr15_+_78832790 D28362 BC030529 AL110100 BC022445 BC093069 BC047667 D00763	101549	+	AB209403|IREB2|3658|iron-responsive element binding protein 2##BC017880|IREB2|3658|iron-responsive element binding protein 2##AK292992|IREB2|3658|iron-responsive element binding protein 2##BC117481|IREB2|3658|iron-responsive element binding protein 2##BC117483|IREB2|3658|iron-responsive element binding protein 2##BC143948|IREB2|3658|iron-responsive element binding protein 2##HQ258663|IREB2|3658|iron-responsive element binding protein 2##M58511|IREB2|3658|iron-responsive element binding protein 2##NM_004136|IREB2|3658|iron-responsive element binding protein 2##NM_004378|CRABP1|1381|cellular retinoic acid binding protein 1##AB593091|CRABP1|1381|cellular retinoic acid binding protein 1##BC022069|CRABP1|1381|cellular retinoic acid binding protein 1##S74445|CRABP1|1381|cellular retinoic acid binding protein 1##DQ896830|CRABP1|1381|cellular retinoic acid binding protein 1##EU176284|CRABP1|1381|cellular retinoic acid binding protein 1##CR457017|CRABP1|1381|cellular retinoic acid binding protein 1##AL110113|CRABP1|1381|cellular retinoic acid binding protein 1##NM_001013619|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##NM_001083612|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##AK126453|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC132753|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC144383|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##NM_001102667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102668|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_002789|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC005361|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK055714|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK315526|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D28362|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC030529|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AL110100|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC022445|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC093069|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC047667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D00763|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4	0.972229	0.0	denovo_WM_7:0:0.908
chr2	137067704	137067884	reg1003125.p2	5.871	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-192118	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-193996	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-324578	-	TSC_hg19_v1_chr2_+_137523114 AK299929	455322	+	NM_001080427	680667	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1654140	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	0.0	0.0	
chr11	78128009	78128122	reg1001301.p2	5.870	+	AB011143 BC152459 NM_012296	-75140	-	AK056231 NM_020798 AK301048 AK307875 TSC_hg19_v1_chr11_+_77899953	-228140	+	TSC_hg19_v1_chr11_-_77899673 AK300320 BC036058 NM_001029859 AK095233	-228409	-	AB018413 BC131711 TSC_hg19_v1_chr11_-_78128848	741	-	TSC_hg19_v1_chr11_-_78128866 NM_080491	811	-	BC007800 TSC_hg19_v1_chr11_-_78285839 AK056980	157727	-	AB011143|GAB2|9846|GRB2-associated binding protein 2##BC152459|GAB2|9846|GRB2-associated binding protein 2##NM_012296|GAB2|9846|GRB2-associated binding protein 2##AK056231|USP35|57558|ubiquitin specific peptidase 35##NM_020798|USP35|57558|ubiquitin specific peptidase 35##AK301048|USP35|57558|ubiquitin specific peptidase 35##AK307875|USP35|57558|ubiquitin specific peptidase 35##AK300320|KCTD21|283219|potassium channel tetramerisation domain containing 21##BC036058|KCTD21|283219|potassium channel tetramerisation domain containing 21##NM_001029859|KCTD21|283219|potassium channel tetramerisation domain containing 21##AK095233|KCTD21|283219|potassium channel tetramerisation domain containing 21##AB018413|GAB2|9846|GRB2-associated binding protein 2##BC131711|GAB2|9846|GRB2-associated binding protein 2##NM_080491|GAB2|9846|GRB2-associated binding protein 2##BC007800|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AK056980|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)	0.0	0.0	
chr17	48262515	48262695	reg1008238.p1	5.869	+	AK300710 TSC_hg19_v1_chr17_+_48243372 L34355 L35853 L46810 NM_000023 NM_001135697 AK293614 AK290622 BC025702 U08895 AB464188 DQ893777 CU693018	-19223	+	AJ401189 NM_032595 TSC_hg19_v1_chr17_-_48227977	-34679	-	TSC_hg19_v1_chr17_-_48207145 BC142728 BC136485 AY148482 NM_174920 AK291482 AK094209 AK225767 BC141822	-55456	-	TSC_hg19_v1_chr17_+_48262817 CU691369	234	+	J00113 TSC_hg19_v1_chr17_-_48262921 M32790 M32798	314	-	TSC_hg19_v1_chr17_-_48264068 X06269 S64596	1556	-	AK300710|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##L34355|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##L35853|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##L46810|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##NM_000023|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##NM_001135697|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##AK290622|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##BC025702|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##U08895|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##DQ893777|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##AJ401189|PPP1R9B|84687|protein phosphatase 1, regulatory subunit 9B##NM_032595|PPP1R9B|84687|protein phosphatase 1, regulatory subunit 9B##BC142728|SAMD14|201191|sterile alpha motif domain containing 14##BC136485|SAMD14|201191|sterile alpha motif domain containing 14##AY148482|SAMD14|201191|sterile alpha motif domain containing 14##NM_174920|SAMD14|201191|sterile alpha motif domain containing 14##AK291482|SAMD14|201191|sterile alpha motif domain containing 14##AK094209|SAMD14|201191|sterile alpha motif domain containing 14##AK225767|SAMD14|201191|sterile alpha motif domain containing 14##BC141822|SAMD14|201191|sterile alpha motif domain containing 14##J00113|COL1A1|1277|collagen, type I, alpha 1##M32798|COL1A1|1277|collagen, type I, alpha 1##X06269|COL1A1|1277|collagen, type I, alpha 1##S64596|COL1A1|1277|collagen, type I, alpha 1	0.992248	0.0	
chr10	70847343	70847454	reg1003202.p1	5.868	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-98863	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-131466	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-186281	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	438	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	486	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	36493	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	1.9364	0.0	denovo_WM_7:-86:0.261	denovo_WM_7:-89:0.626	denovo_WM_7:-104:0.370	denovo_WM_7:-105:0.433
chr16	12749926	12750020	reg1008571.p2	5.868	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-679400	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-690889	+	NM_001130007	-739455	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	147678	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	147746	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	245495	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	0.986798	0.0	denovo_WM_7:24:0.976
chr16	62673467	62673599	reg1007865.p1	5.868	+	AK124734 NM_001796	-602795	-	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-3905336	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-3954877	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	2482369	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	2482435	-	TSC_hg19_v1_chr16_-_65155987 AK297377	2482461	-	AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK297377|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	0.991701	0.0	denovo_WM_7:12:0.560
chr14	97849256	97849436	reg1005153.p2	5.867	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-585631	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-880562	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-880600	+	AK098639 NM_182560	1328603	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1888271	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1888544	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.0	0.0	
chr17	726631	726746	reg1005749.p1	5.867	+	BC011550 TSC_hg19_v1_chr17_+_685611 BC050614 AK225128 AB590841 CU679954 CU690740	-41074	+	AF177344 NM_018146 TSC_hg19_v1_chr17_+_685592 AK001443 AK222900	-41130	+	TSC_hg19_v1_chr17_-_685521 AK226083 AK292315 BC008605 CU677471 AK296584 AF061730 AF177342 AK301751 BC010902 BC015848 AK001488 AF177343 NM_016080	-41208	-	BC009327 AK302073 NM_001205319	40630	-	TSC_hg19_v1_chr17_-_882986 AB590045 NM_022463	156312	-	TSC_hg19_v1_chr17_+_900368 BC002324 NM_013337 AK000830 AK225453 AF155330	173667	+	BC011550|RNMTL1|55178|RNA methyltransferase like 1##BC050614|RNMTL1|55178|RNA methyltransferase like 1##AK225128|RNMTL1|55178|RNA methyltransferase like 1##AF177344|RNMTL1|55178|RNA methyltransferase like 1##NM_018146|RNMTL1|55178|RNA methyltransferase like 1##AK001443|RNMTL1|55178|RNA methyltransferase like 1##AK222900|RNMTL1|55178|RNA methyltransferase like 1##AK226083|GLOD4|51031|glyoxalase domain containing 4##AK292315|GLOD4|51031|glyoxalase domain containing 4##BC008605|GLOD4|51031|glyoxalase domain containing 4##AK296584|GLOD4|51031|glyoxalase domain containing 4##AF061730|GLOD4|51031|glyoxalase domain containing 4##AF177342|GLOD4|51031|glyoxalase domain containing 4##AK301751|GLOD4|51031|glyoxalase domain containing 4##BC010902|GLOD4|51031|glyoxalase domain containing 4##BC015848|GLOD4|51031|glyoxalase domain containing 4##AK001488|GLOD4|51031|glyoxalase domain containing 4##AF177343|GLOD4|51031|glyoxalase domain containing 4##NM_016080|GLOD4|51031|glyoxalase domain containing 4##BC009327|NXN|64359|nucleoredoxin##AK302073|NXN|64359|nucleoredoxin##NM_001205319|NXN|64359|nucleoredoxin##NM_022463|NXN|64359|nucleoredoxin##BC002324|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##NM_013337|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK000830|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK225453|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AF155330|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)	0.995485	0.0	denovo_WM_7:-41:0.388	denovo_WM_7:-42:0.523
chr17	8768843	8768974	reg1008411.p2	5.867	+	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-66356	-	BC146949 BC146966 BC171861 NM_001128076	-107032	-	BC029224 AK057296 NM_001158261 NM_144681	-120780	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	2076	-	AY725853 AF128881 NM_014308	46908	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	100073	-	BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5	0.988584	0.0	denovo_WM_7:23:0.496	denovo_WM_7:24:0.410
chr20	33307574	33307754	reg1001266.p2	5.867	+	AL122050 TSC_hg19_v1_chr20_+_33299806	-7871	+	AK027153 AK025412 TSC_hg19_v1_chr20_+_33299500	-8254	+	TSC_hg19_v1_chr20_+_33292147 AY422170 NM_021202 AJ297792 AK292443 BC035639	-15461	+	TSC_hg19_v1_chr20_-_33413434 BC069829 BC035676 NM_001242539 NM_014071 BC047886	105750	-	TSC_hg19_v1_chr20_-_33460644 AY138815 BC040030 AK124788 AK098355 BC101371 BC141843 BC101370 BC101372 AK299494 BC033745 NM_178026	152961	-	NM_001242393 TSC_hg19_v1_chr20_+_33462793 AK000162	155138	+	AL122050|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK027153|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK025412|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AY422170|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##NM_021202|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AJ297792|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##AK292443|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC035639|TP53INP2|58476|tumor protein p53 inducible nuclear protein 2##BC069829|NCOA6|23054|nuclear receptor coactivator 6##BC035676|NCOA6|23054|nuclear receptor coactivator 6##NM_001242539|NCOA6|23054|nuclear receptor coactivator 6##NM_014071|NCOA6|23054|nuclear receptor coactivator 6##BC047886|NCOA6|23054|nuclear receptor coactivator 6##AY138815|GGT7|2686|gamma-glutamyltransferase 7##BC040030|GGT7|2686|gamma-glutamyltransferase 7##AK124788|GGT7|2686|gamma-glutamyltransferase 7##BC101371|GGT7|2686|gamma-glutamyltransferase 7##BC141843|GGT7|2686|gamma-glutamyltransferase 7##BC101370|GGT7|2686|gamma-glutamyltransferase 7##BC101372|GGT7|2686|gamma-glutamyltransferase 7##AK299494|GGT7|2686|gamma-glutamyltransferase 7##BC033745|GGT7|2686|gamma-glutamyltransferase 7##NM_178026|GGT7|2686|gamma-glutamyltransferase 7##NM_001242393|ACSS2|55902|acyl-CoA synthetase short-chain family member 2##AK000162|ACSS2|55902|acyl-CoA synthetase short-chain family member 2	0.012448	0.0	
chr14	77427456	77427600	reg1004709.p1	5.865	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-134733	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-148266	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-148318	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	67156	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	67532	-	AK124327 TSC_hg19_v1_chr14_-_77542533	115005	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	1.944352	0.0	denovo_WM_7:53:0.799	denovo_WM_7:68:0.463	denovo_WM_7:69:0.524
chr4	177116883	177117063	reg1007468.p2	5.865	+	CU692400 TSC_hg19_v1_chr4_-_177116722 BC021731 BC029428 AY040204 NM_144644	-206	-	TSC_hg19_v1_chr4_+_176987148 BC118549 BC118627 AK098748 DQ426895 DQ426896	-129804	+	BC146812 NM_170710 NM_181265 AF492460 TSC_hg19_v1_chr4_+_176987137	-129912	+	AY057053 CU688084 AK096441 BC065710 BX647857 NM_080874	73342	-	TSC_hg19_v1_chr4_+_177241098 NM_021928	124080	+	TSC_hg19_v1_chr4_+_177241122 AK026302 AL136660 AY359044 BC043490 BC053883 BC047290 CU690386 EU831652 EU831735	124195	+	BC021731|SPATA4|132851|spermatogenesis associated 4##BC029428|SPATA4|132851|spermatogenesis associated 4##AY040204|SPATA4|132851|spermatogenesis associated 4##NM_144644|SPATA4|132851|spermatogenesis associated 4##BC118549|WDR17|116966|WD repeat domain 17##BC118627|WDR17|116966|WD repeat domain 17##AK098748|WDR17|116966|WD repeat domain 17##DQ426895|WDR17|116966|WD repeat domain 17##DQ426896|WDR17|116966|WD repeat domain 17##BC146812|WDR17|116966|WD repeat domain 17##NM_170710|WDR17|116966|WD repeat domain 17##NM_181265|WDR17|116966|WD repeat domain 17##AF492460|WDR17|116966|WD repeat domain 17##AY057053|ASB5|140458|ankyrin repeat and SOCS box containing 5##AK096441|ASB5|140458|ankyrin repeat and SOCS box containing 5##BC065710|ASB5|140458|ankyrin repeat and SOCS box containing 5##BX647857|ASB5|140458|ankyrin repeat and SOCS box containing 5##NM_080874|ASB5|140458|ankyrin repeat and SOCS box containing 5##NM_021928|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AK026302|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AL136660|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##AY359044|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC043490|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC053883|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##BC047290|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831652|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)##EU831735|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)	0.371082	0.0	denovo_WM_7:23:0.371
chr7	45035484	45035638	reg1007327.p1	5.865	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-9321	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-16864	-	BC113544 BC117241 TSC_hg19_v1_chr7_-_45018675 AB290179 AL832302	-16899	-	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	4293	+	NM_001029835 AK298671 AK303216 AK303534	31690	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	92938	-	AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##BC113544|MYO1G|64005|myosin IG##BC117241|MYO1G|64005|myosin IG##AB290179|MYO1G|64005|myosin IG##AL832302|MYO1G|64005|myosin IG##AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing	0.0	0.0	
chr11	59383917	59384049	reg1007330.p2	5.864	+	AF185696 M86917 NM_002556	-367	-	TSC_hg19_v1_chr11_-_59383232 BC011581	-773	-	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	-814	-	AM392959 AB527197 TSC_hg19_v1_chr11_-_59436483 AL831992 AK127943	52442	-	TSC_hg19_v1_chr11_-_59436490 NM_152716	52524	-	NM_001005324 AB529286	97334	-	AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein##BC011581|OSBP|5007|oxysterol binding protein##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##AM392959|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AL831992|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##AK127943|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##NM_152716|PATL1|219988|protein associated with topoisomerase II homolog 1 (yeast)##NM_001005324|OR10V1|390201|olfactory receptor, family 10, subfamily V, member 1	0.0	0.0	
chr20	46105106	46105246	reg1006554.p2	5.864	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-119688	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-128529	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-177607	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	25446	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	25508	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	309576	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	1.989387	0.0	denovo_WM_7:4:0.824	denovo_WM_7:-78:0.290	denovo_WM_7:-81:0.414
chr12	31902475	31902603	reg1005509.p2	5.863	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-20483	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-20565	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-89925	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	42665	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	209792	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	209855	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	1.063355	0.0	denovo_WM_7:91:0.284	denovo_WM_7:92:0.284	denovo_WM_7:93:0.350
chr15	97129380	97129557	reg1008650.p2	5.863	+	NM_001145157	-252900	+	AK316086 NM_001145156	-253675	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	-255491	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	197204	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1374451	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	1374483	+	NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4	0.999325	0.0	
chr19	7463579	7463722	reg1007624.p1	5.863	+	TSC_hg19_v1_chr19_+_7460061 AB011093	-3573	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	-3643	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-169690	-	AK127045 NM_001130955	40923	+	TSC_hg19_v1_chr19_-_7553914 CU679101 AB095921 BC008780 NM_080662	90252	-	NM_198534 AK093103 AX747925 BC029824 BC034779	98819	+	AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB095921|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##BC008780|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##NM_080662|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##NM_198534|C19orf45|374877|chromosome 19 open reading frame 45##AK093103|C19orf45|374877|chromosome 19 open reading frame 45##BC029824|C19orf45|374877|chromosome 19 open reading frame 45##BC034779|C19orf45|374877|chromosome 19 open reading frame 45	1.333601	0.0	denovo_WM_7:-47:0.345	denovo_WM_7:-64:0.329	denovo_WM_7:-65:0.329	denovo_WM_7:-66:0.330
chr2	158300572	158300752	reg1001274.p1	5.863	+	L06633 AB528875 CU690346 AF068836 BC036449 TSC_hg19_v1_chr2_-_158300602 AK312753 NM_004288	-98	-	NM_001009959 AK296477	-116506	-	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	-118378	-	TSC_hg19_v1_chr2_-_158454049 AF525679 NM_001111031	153413	-	AB590288 CU692676 DQ895570 EU176205 AF525680 AF525681 AY127050 TSC_hg19_v1_chr2_-_158485239	184536	-	BC022530 NM_001111032 NM_001111033 NM_145259 TSC_hg19_v1_chr2_-_158485400	184735	-	L06633|CYTIP|9595|cytohesin 1 interacting protein##AF068836|CYTIP|9595|cytohesin 1 interacting protein##BC036449|CYTIP|9595|cytohesin 1 interacting protein##AK312753|CYTIP|9595|cytohesin 1 interacting protein##NM_004288|CYTIP|9595|cytohesin 1 interacting protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##AF525679|ACVR1C|130399|activin A receptor, type IC##NM_001111031|ACVR1C|130399|activin A receptor, type IC##DQ895570|ACVR1C|130399|activin A receptor, type IC##EU176205|ACVR1C|130399|activin A receptor, type IC##AF525680|ACVR1C|130399|activin A receptor, type IC##AF525681|ACVR1C|130399|activin A receptor, type IC##AY127050|ACVR1C|130399|activin A receptor, type IC##BC022530|ACVR1C|130399|activin A receptor, type IC##NM_001111032|ACVR1C|130399|activin A receptor, type IC##NM_001111033|ACVR1C|130399|activin A receptor, type IC##NM_145259|ACVR1C|130399|activin A receptor, type IC	0.0	0.0	
chr14	102284942	102285043	reg1006672.p1	5.862	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-8683	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	-8809	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-56806	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	145836	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	145969	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	268372	-	AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.998338	0.0	denovo_WM_7:-12:0.457	denovo_WM_7:-13:0.457
chr9	37187708	37187866	reg1006387.p1	5.862	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-67204	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-67279	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-67301	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	234919	+	BC010007 TSC_hg19_v1_chr9_-_37465267	277473	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	277608	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.995965	0.0	denovo_WM_7:3:0.900
chr6	108972125	108972249	reg1007735.p1	5.861	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	-89930	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	-90112	+	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	-91164	+	TSC_hg19_v1_chr6_+_109169624 AK294574 NM_032131 AK292499 BC030603	197434	+	AF033121 NM_001199934	358003	-	TSC_hg19_v1_chr6_-_109330747 AF033120	358529	-	AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##AK294574|ARMC2|84071|armadillo repeat containing 2##NM_032131|ARMC2|84071|armadillo repeat containing 2##AK292499|ARMC2|84071|armadillo repeat containing 2##BC030603|ARMC2|84071|armadillo repeat containing 2##AF033121|SESN1|27244|sestrin 1##NM_001199934|SESN1|27244|sestrin 1##AF033120|SESN1|27244|sestrin 1	0.302004	0.0	denovo_WM_7:0:0.210
chr6	137987523	137987661	reg1005873.p1	5.861	+	BC051352 AK096362 NM_175747	-172067	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-447034	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-447047	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	200945	+	TSC_hg19_v1_chr6_-_138189314 AK124173	201758	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	440976	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	0.0	0.0	
chr7	55133412	55133592	reg1007668.p1	5.861	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-46556	+	TSC_hg19_v1_chr7_+_55086710 BC057802 BC094761 HQ912715 NM_005228 NM_201282 NM_201283 NM_201284 AF125253 U48722 X00588 BC070081 AK225422 K03193 AB209442 BC134346	-46757	+	TSC_hg19_v1_chr7_-_54826929 AF054184 AK311845 NM_001012456 NM_014302	-306581	-	AK095857 NM_018697	299638	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	300070	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	506538	-	AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##BC094761|EGFR|1956|epidermal growth factor receptor##HQ912715|EGFR|1956|epidermal growth factor receptor##NM_005228|EGFR|1956|epidermal growth factor receptor##NM_201282|EGFR|1956|epidermal growth factor receptor##NM_201283|EGFR|1956|epidermal growth factor receptor##NM_201284|EGFR|1956|epidermal growth factor receptor##AF125253|EGFR|1956|epidermal growth factor receptor##U48722|EGFR|1956|epidermal growth factor receptor##X00588|EGFR|1956|epidermal growth factor receptor##BC070081|EGFR|1956|epidermal growth factor receptor##AK225422|EGFR|1956|epidermal growth factor receptor##K03193|EGFR|1956|epidermal growth factor receptor##AB209442|EGFR|1956|epidermal growth factor receptor##AF054184|SEC61G|23480|Sec61 gamma subunit##AK311845|SEC61G|23480|Sec61 gamma subunit##NM_001012456|SEC61G|23480|Sec61 gamma subunit##NM_014302|SEC61G|23480|Sec61 gamma subunit##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.999262	0.0	denovo_WM_7:29:0.239	denovo_WM_7:30:0.239	denovo_WM_7:31:0.239	denovo_WM_7:32:0.239
chr7	73645437	73645583	reg1007562.p2	5.861	+	TSC_hg19_v1_chr7_+_73624361 AF252613	-21156	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	-21174	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	-21228	+	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	23201	-	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	23226	-	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	58277	+	AF252613|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2	1.686455	0.0	denovo_WM_7:-35:0.953	denovo_WM_7:-72:0.636
chr18	43830440	43830586	reg1007571.p1	5.860	+	TSC_hg19_v1_chr18_+_43754065 AK289738	-76431	+	TSC_hg19_v1_chr18_+_43754007 BC084579	-76498	+	TSC_hg19_v1_chr18_+_43754002 NM_001008239 NM_145055 AK292981	-76519	+	TSC_hg19_v1_chr18_+_43913942 AK055997	83419	+	AK091537 AK122819 AK127467 AX747044 NM_152470	83673	+	AK057232 BC047720 NM_001145473 NM_001173129	268527	-	AK289738|C18orf25|147339|chromosome 18 open reading frame 25##BC084579|C18orf25|147339|chromosome 18 open reading frame 25##NM_001008239|C18orf25|147339|chromosome 18 open reading frame 25##NM_145055|C18orf25|147339|chromosome 18 open reading frame 25##AK292981|C18orf25|147339|chromosome 18 open reading frame 25##AK055997|RNF165|494470|ring finger protein 165##AK091537|RNF165-IT1|147341|RNF165 intronic transcript 1 (non-protein coding)##AK122819|RNF165|494470|ring finger protein 165##AK127467|RNF165|494470|ring finger protein 165##NM_152470|RNF165|494470|ring finger protein 165##AK057232|LOXHD1|125336|lipoxygenase homology domains 1##BC047720|LOXHD1|125336|lipoxygenase homology domains 1##NM_001145473|LOXHD1|125336|lipoxygenase homology domains 1##NM_001173129|LOXHD1|125336|lipoxygenase homology domains 1	0.665494	0.0	denovo_WM_7:-12:0.665
chr7	56133799	56133925	reg1002081.p4	5.860	+	AK297793 TSC_hg19_v1_chr7_+_56132003 AY323911 BC006159 BC015600 BC000224	-1841	+	BC065222 TSC_hg19_v1_chr7_+_56131978 CR936757 AK298605 CR936749 AY359103 BC084539 AK297042 AK301627 AL050037	-1877	+	NM_001042469 NM_001042470 NM_001130069 NM_001146333 NM_015411 TSC_hg19_v1_chr7_+_56131966 AK075477 AK300488 BC111092	-1921	+	BC069655 BC069679 BC069738 BC069754 X80590 BC051327 AK300928 AK293180 AK299429 AK309503 AK312851 NM_006213	26784	-	AY605046 CU688146 EU832651 EU832729 AY633613 BC015639 TSC_hg19_v1_chr7_-_56174144 BC100275 Z36851 BC003079 BC071985 BC066331	40263	-	TSC_hg19_v1_chr7_-_56174151 AF078845	40297	-	AK297793|SUMF2|25870|sulfatase modifying factor 2##AY323911|SUMF2|25870|sulfatase modifying factor 2##BC006159|SUMF2|25870|sulfatase modifying factor 2##BC015600|SUMF2|25870|sulfatase modifying factor 2##BC000224|SUMF2|25870|sulfatase modifying factor 2##BC065222|SUMF2|25870|sulfatase modifying factor 2##CR936757|SUMF2|25870|sulfatase modifying factor 2##AK298605|SUMF2|25870|sulfatase modifying factor 2##CR936749|SUMF2|25870|sulfatase modifying factor 2##AY359103|SUMF2|25870|sulfatase modifying factor 2##BC084539|SUMF2|25870|sulfatase modifying factor 2##AK297042|SUMF2|25870|sulfatase modifying factor 2##AK301627|SUMF2|25870|sulfatase modifying factor 2##AL050037|SUMF2|25870|sulfatase modifying factor 2##NM_001042469|SUMF2|25870|sulfatase modifying factor 2##NM_001042470|SUMF2|25870|sulfatase modifying factor 2##NM_001130069|SUMF2|25870|sulfatase modifying factor 2##NM_001146333|SUMF2|25870|sulfatase modifying factor 2##NM_015411|SUMF2|25870|sulfatase modifying factor 2##AK075477|SUMF2|25870|sulfatase modifying factor 2##AK300488|SUMF2|25870|sulfatase modifying factor 2##BC111092|SUMF2|25870|sulfatase modifying factor 2##BC069655|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069679|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069738|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069754|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##X80590|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC051327|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK300928|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK293180|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK299429|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK309503|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK312851|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##NM_006213|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AY605046|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832651|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832729|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AY633613|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC015639|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC100275|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC003079|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC071985|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC066331|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AF078845|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2	2.519745	0.0	denovo_WM_7:-47:0.351	denovo_WM_7:-63:0.694	denovo_WM_7:-78:0.725
chr10	65282173	65282289	reg1006782.p1	5.859	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-990	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-1069	+	TSC_hg19_v1_chr10_+_65281112 BC068557 NM_001001330	-1116	+	NM_178011 BX640611 AY358315 BC111492	3403584	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	4143165	-	AF091606 AK313882 NM_013266	4173706	-	BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##BC068557|REEP3|221035|receptor accessory protein 3##NM_001001330|REEP3|221035|receptor accessory protein 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	0.0	0.0	
chr1	153537931	153538111	reg1004100.p2	5.859	+	BC012893 NM_002960 Z18948	-16296	-	BC000838 BC024974 AK292083 BC016300 NM_002961 NM_019554 TSC_hg19_v1_chr1_-_153518283	-19747	-	BC093955 BC093957 NM_002962 Z18954	-23853	-	BC002829 NM_005978	284	-	BC095462 U92985 TSC_hg19_v1_chr1_-_153581484 AK290804	43444	-	TSC_hg19_v1_chr1_-_153585546 BC010541 NM_080388 AY221961 BC019099 AY762098	47543	-	BC012893|S100A3|6274|S100 calcium binding protein A3##NM_002960|S100A3|6274|S100 calcium binding protein A3##Z18948|S100A3|6274|S100 calcium binding protein A3##BC000838|S100A4|6275|S100 calcium binding protein A4##BC024974|S100A4|6275|S100 calcium binding protein A4##AK292083|S100A4|6275|S100 calcium binding protein A4##BC016300|S100A4|6275|S100 calcium binding protein A4##NM_002961|S100A4|6275|S100 calcium binding protein A4##NM_019554|S100A4|6275|S100 calcium binding protein A4##BC093955|S100A5|6276|S100 calcium binding protein A5##BC093957|S100A5|6276|S100 calcium binding protein A5##NM_002962|S100A5|6276|S100 calcium binding protein A5##Z18954|S100A5|6276|S100 calcium binding protein A5##BC002829|S100A2|6273|S100 calcium binding protein A2##NM_005978|S100A2|6273|S100 calcium binding protein A2##BC095462|S100A16|140576|S100 calcium binding protein A16##U92985|S100A16|140576|S100 calcium binding protein A16##AK290804|S100A16|140576|S100 calcium binding protein A16##BC010541|S100A16|140576|S100 calcium binding protein A16##NM_080388|S100A16|140576|S100 calcium binding protein A16##AY221961|S100A16|140576|S100 calcium binding protein A16##BC019099|S100A16|140576|S100 calcium binding protein A16##AY762098|S100A16|140576|S100 calcium binding protein A16	0.0	0.117667	
chr11	86002742	86002861	reg1000169.p1	5.859	+	TSC_hg19_v1_chr11_+_85956277 BC068995 AK294133 CU686693 AB463023 EU446743 AF078933 AK301265 BC047672	-46515	+	AF099032 U90651 TSC_hg19_v1_chr11_+_85956254	-46584	+	AF070418 TSC_hg19_v1_chr11_+_85956058	-46752	+	NM_016401 TSC_hg19_v1_chr11_+_86013281 AF161487 AF161527 AK001447 AK223198 BC015991 BC021621 AK298763 BC018080 BC001677 BC006476 DQ892731 DQ895977 CU674828 CU676162	10568	+	AK131331 NM_001156474 NM_021827	82976	+	TSC_hg19_v1_chr11_-_86383218 BC022472 NM_001014811 AK092181	380404	-	BC068995|EED|8726|embryonic ectoderm development##AK294133|EED|8726|embryonic ectoderm development##EU446743|EED|8726|embryonic ectoderm development##AF078933|EED|8726|embryonic ectoderm development##AK301265|EED|8726|embryonic ectoderm development##BC047672|EED|8726|embryonic ectoderm development##AF099032|EED|8726|embryonic ectoderm development##U90651|EED|8726|embryonic ectoderm development##AF070418|EED|8726|embryonic ectoderm development##NM_016401|C11orf73|51501|chromosome 11 open reading frame 73##AF161487|C11orf73|51501|chromosome 11 open reading frame 73##AF161527|C11orf73|51501|chromosome 11 open reading frame 73##AK001447|C11orf73|51501|chromosome 11 open reading frame 73##AK223198|C11orf73|51501|chromosome 11 open reading frame 73##BC015991|C11orf73|51501|chromosome 11 open reading frame 73##BC021621|C11orf73|51501|chromosome 11 open reading frame 73##AK298763|C11orf73|51501|chromosome 11 open reading frame 73##BC018080|C11orf73|51501|chromosome 11 open reading frame 73##BC001677|C11orf73|51501|chromosome 11 open reading frame 73##BC006476|C11orf73|51501|chromosome 11 open reading frame 73##DQ892731|C11orf73|51501|chromosome 11 open reading frame 73##DQ895977|C11orf73|51501|chromosome 11 open reading frame 73##AK131331|CCDC81|60494|coiled-coil domain containing 81##NM_001156474|CCDC81|60494|coiled-coil domain containing 81##NM_021827|CCDC81|60494|coiled-coil domain containing 81##BC022472|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##NM_001014811|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##AK092181|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial	0.0	0.0	
chr2	112656955	112657109	reg1006363.p2	5.859	+	TSC_hg19_v1_chr2_+_112656224 BC114917 BC114918	-812	+	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	-847	+	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	-15271	-	NM_032824 AK027587 TSC_hg19_v1_chr2_+_112812871	155809	+	TSC_hg19_v1_chr2_+_112812903 BC115373	155915	+	TSC_hg19_v1_chr2_+_112813153 AK290294 AY429534 AY429535	156155	+	BC114917|MERTK|10461|c-mer proto-oncogene tyrosine kinase##BC114918|MERTK|10461|c-mer proto-oncogene tyrosine kinase##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##NM_032824|TMEM87B|84910|transmembrane protein 87B##AK027587|TMEM87B|84910|transmembrane protein 87B##BC115373|TMEM87B|84910|transmembrane protein 87B##AK290294|TMEM87B|84910|transmembrane protein 87B##AY429534|TMEM87B|84910|transmembrane protein 87B##AY429535|TMEM87B|84910|transmembrane protein 87B	0.908043	0.0	denovo_WM_7:69:0.440	denovo_WM_7:70:0.388
chr2	228675998	228676160	reg1008584.p1	5.859	+	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	-93358	-	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	-178161	-	TSC_hg19_v1_chr2_+_228356287 AK295030	-319788	+	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	2512	+	AK097409 NM_178821 BC036377 AK098821 AK301861	60273	+	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	370283	-	AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AK295030|AGFG1|3267|ArfGAP with FG repeats 1##BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing	1.396263	0.0	
chr2	69875579	69875686	reg1005216.p1	5.859	+	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	-4540	-	TSC_hg19_v1_chr2_-_69870872 AB028971	-4775	-	TSC_hg19_v1_chr2_-_69870783 AK310951 AK056043	-4864	-	BC063672 NM_001153 BC000182 TSC_hg19_v1_chr2_+_69969232 AK293177	93538	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	93633	+	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	181175	+	NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1##AB028971|AAK1|22848|AP2 associated kinase 1##AK310951|AAK1|22848|AP2 associated kinase 1##AK056043|AAK1|22848|AP2 associated kinase 1##BC063672|ANXA4|307|annexin A4##NM_001153|ANXA4|307|annexin A4##BC000182|ANXA4|307|annexin A4##AK293177|ANXA4|307|annexin A4##BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)	0.0	0.0	
chr5	10249734	10249888	reg1000065.p2	5.859	+	BC095521 NM_019599	-619349	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	-703617	-	TSC_hg19_v1_chr5_+_7869306 BC062577	-2380501	+	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	173	-	AK300042 TSC_hg19_v1_chr5_-_10250001 AK316317 AK055604 AK302012 NM_199133	194	-	NM_012073 AK302368 TSC_hg19_v1_chr5_+_10250368	514	+	BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC063406|FAM173B|134145|family with sequence similarity 173, member B##AK300042|FAM173B|134145|family with sequence similarity 173, member B##AK316317|FAM173B|134145|family with sequence similarity 173, member B##AK055604|FAM173B|134145|family with sequence similarity 173, member B##AK302012|FAM173B|134145|family with sequence similarity 173, member B##NM_199133|FAM173B|134145|family with sequence similarity 173, member B##NM_012073|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK302368|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)	0.0	0.0	
chr5	96794753	96794871	reg1007052.p2	5.858	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-275825	-	TSC_hg19_v1_chr5_-_96518945 AK002021	-275870	-	TSC_hg19_v1_chr5_-_96518934 AK225348 BC000953	-275904	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	1310229	+	BC054860 BC117134 NM_001270 AF006513	1467416	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	3076261	+	NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AK002021|RIOK2|55781|RIO kinase 2 (yeast)##AK225348|RIOK2|55781|RIO kinase 2 (yeast)##BC000953|RIOK2|55781|RIO kinase 2 (yeast)##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A	1.28385	0.0	denovo_WM_7:28:0.681	denovo_WM_7:79:0.222
chr9	102857185	102857317	reg1007526.p1	5.858	+	TSC_hg19_v1_chr9_+_102677458 BC101564 BC101566 BC143430 BC039048	-179791	+	TSC_hg19_v1_chr9_+_102668954 BC111009 AK000658 BC070269 AK095262 AL833620	-188250	+	AK311412 TSC_hg19_v1_chr9_+_102668952	-188299	+	AB383909 AJ344330 TSC_hg19_v1_chr9_-_102861281 AB011145 AY359048 BX648519	3951	-	TSC_hg19_v1_chr9_-_102861295 BC005374	4042	-	TSC_hg19_v1_chr9_-_102861305 AK075024 NM_015051	4070	-	BC101564|STX17|55014|syntaxin 17##BC101566|STX17|55014|syntaxin 17##BC143430|STX17|55014|syntaxin 17##BC111009|STX17|55014|syntaxin 17##AK000658|STX17|55014|syntaxin 17##BC070269|STX17|55014|syntaxin 17##AK095262|STX17|55014|syntaxin 17##AL833620|STX17|55014|syntaxin 17##AK311412|STX17|55014|syntaxin 17##AJ344330|ERP44|23071|endoplasmic reticulum protein 44##AB011145|ERP44|23071|endoplasmic reticulum protein 44##AY359048|ERP44|23071|endoplasmic reticulum protein 44##BX648519|ERP44|23071|endoplasmic reticulum protein 44##BC005374|ERP44|23071|endoplasmic reticulum protein 44##AK075024|ERP44|23071|endoplasmic reticulum protein 44##NM_015051|ERP44|23071|endoplasmic reticulum protein 44	0.994157	0.0	denovo_WM_7:13:0.299	denovo_WM_7:14:0.299	denovo_WM_7:15:0.299
chr9	116282954	116283078	reg1000326.p4	5.858	+	AF463495 NM_130795 AK096840 BC042555 CU692096 AF490840	-19235	+	TSC_hg19_v1_chr9_+_116226007 AK125059 NM_017790 AK074977	-57002	+	AK128127 NM_144488	-76006	+	TSC_hg19_v1_chr9_+_116327336 AK289666 AK301515 AK310705 NM_134427	44316	+	AF006609 NM_021106	59923	+	U27655 AK125094 TSC_hg19_v1_chr9_+_116343207	60172	+	AF463495|RGS3|5998|regulator of G-protein signaling 3##NM_130795|RGS3|5998|regulator of G-protein signaling 3##AK096840|RGS3|5998|regulator of G-protein signaling 3##BC042555|RGS3|5998|regulator of G-protein signaling 3##AF490840|RGS3|5998|regulator of G-protein signaling 3##AK125059|RGS3|5998|regulator of G-protein signaling 3##NM_017790|RGS3|5998|regulator of G-protein signaling 3##AK074977|RGS3|5998|regulator of G-protein signaling 3##AK128127|RGS3|5998|regulator of G-protein signaling 3##NM_144488|RGS3|5998|regulator of G-protein signaling 3##AK289666|RGS3|5998|regulator of G-protein signaling 3##AK301515|RGS3|5998|regulator of G-protein signaling 3##AK310705|RGS3|5998|regulator of G-protein signaling 3##NM_134427|RGS3|5998|regulator of G-protein signaling 3##AF006609|RGS3|5998|regulator of G-protein signaling 3##NM_021106|RGS3|5998|regulator of G-protein signaling 3##U27655|RGS3|5998|regulator of G-protein signaling 3##AK125094|RGS3|5998|regulator of G-protein signaling 3	0.0	0.0	
chr10	101526240	101526406	reg1002612.p3	5.857	+	BX537557 NM_004376 NM_078470	-33901	-	TSC_hg19_v1_chr10_+_101491990 BC028948 BC011016 AF132966 AK302507 AK314687 AK001142 BC015059 BC021105	-34290	+	TSC_hg19_v1_chr10_+_101491984 NM_015960	-34356	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	16172	+	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	16240	+	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	164380	-	BX537557|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_004376|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_078470|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC028948|CUTC|51076|cutC copper transporter homolog (E. coli)##BC011016|CUTC|51076|cutC copper transporter homolog (E. coli)##AF132966|CUTC|51076|cutC copper transporter homolog (E. coli)##AK302507|CUTC|51076|cutC copper transporter homolog (E. coli)##AK314687|CUTC|51076|cutC copper transporter homolog (E. coli)##AK001142|CUTC|51076|cutC copper transporter homolog (E. coli)##BC015059|CUTC|51076|cutC copper transporter homolog (E. coli)##BC021105|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_015960|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##AK128576|DNMBP|23268|dynamin binding protein	0.0	0.0	
chr11	10463953	10464053	reg1006744.p2	5.857	+	TSC_hg19_v1_chr11_+_10326623 AK312893 BC015961 D14874 NM_001124	-137374	+	TSC_hg19_v1_chr11_-_10315755 BC101466 AY234241 NM_030962	-148237	-	AK098060 TSC_hg19_v1_chr11_+_9779882	-684141	+	AK295046 NM_001172431	7864	+	NM_000480 BC126118 TSC_hg19_v1_chr11_+_10472246 AK311436 M84720 AK289998 AK294444 AK313039 HQ258646	8392	+	NM_001025389 D12775 AK308181 M84721 AK299113 TSC_hg19_v1_chr11_+_10476953	12816	+	AK312893|ADM|133|adrenomedullin##BC015961|ADM|133|adrenomedullin##D14874|ADM|133|adrenomedullin##NM_001124|ADM|133|adrenomedullin##BC101466|SBF2|81846|SET binding factor 2##AY234241|SBF2|81846|SET binding factor 2##NM_030962|SBF2|81846|SET binding factor 2##AK098060|LOC283104|283104|uncharacterized LOC283104##AK295046|AMPD3|272|adenosine monophosphate deaminase 3##NM_001172431|AMPD3|272|adenosine monophosphate deaminase 3##NM_000480|AMPD3|272|adenosine monophosphate deaminase 3##BC126118|AMPD3|272|adenosine monophosphate deaminase 3##AK311436|AMPD3|272|adenosine monophosphate deaminase 3##M84720|AMPD3|272|adenosine monophosphate deaminase 3##AK289998|AMPD3|272|adenosine monophosphate deaminase 3##AK294444|AMPD3|272|adenosine monophosphate deaminase 3##AK313039|AMPD3|272|adenosine monophosphate deaminase 3##HQ258646|AMPD3|272|adenosine monophosphate deaminase 3##NM_001025389|AMPD3|272|adenosine monophosphate deaminase 3##D12775|AMPD3|272|adenosine monophosphate deaminase 3##AK308181|AMPD3|272|adenosine monophosphate deaminase 3##M84721|AMPD3|272|adenosine monophosphate deaminase 3##AK299113|AMPD3|272|adenosine monophosphate deaminase 3	0.998542	0.0	denovo_WM_7:47:0.449	denovo_WM_7:48:0.449
chr1	1150155	1150335	reg1008028.p2	5.857	+	S76792 AB590584 X75962 BC040257 TSC_hg19_v1_chr1_-_1149534 BC105070 BC105072 NM_003327	-724	-	AX781599 AX781601 AF117297 AF125304 AF241229 AX781595 AX781597 BT019531 BT019532 BC152381 BC152386 AY358877 NM_004195 NM_148901 NM_148902	-8235	-	AK093438 AX748126 NM_153254 BC126152 BC126154	-35153	+	TSC_hg19_v1_chr1_-_1167331 BC011244 AK299810 BC006211 BC008917	17064	-	TSC_hg19_v1_chr1_-_1167367 AK223079 AK222521 AK315517 AF132749	17119	-	TSC_hg19_v1_chr1_-_1167386 AK075352 BC022375 AK027277 AF153686 AF178986	17147	-	S76792|TNFRSF4|7293|tumor necrosis factor receptor superfamily, member 4##BC040257|TNFRSF4|7293|tumor necrosis factor receptor superfamily, member 4##BC105070|TNFRSF4|7293|tumor necrosis factor receptor superfamily, member 4##BC105072|TNFRSF4|7293|tumor necrosis factor receptor superfamily, member 4##NM_003327|TNFRSF4|7293|tumor necrosis factor receptor superfamily, member 4##AF117297|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##AF125304|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##AF241229|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##BT019531|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##BT019532|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##BC152381|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##BC152386|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##AY358877|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##NM_004195|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##NM_148901|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##NM_148902|TNFRSF18|8784|tumor necrosis factor receptor superfamily, member 18##AK093438|TTLL10|254173|tubulin tyrosine ligase-like family, member 10##NM_153254|TTLL10|254173|tubulin tyrosine ligase-like family, member 10##BC126152|TTLL10|254173|tubulin tyrosine ligase-like family, member 10##BC126154|TTLL10|254173|tubulin tyrosine ligase-like family, member 10##BC011244|SDF4|51150|stromal cell derived factor 4##AK299810|SDF4|51150|stromal cell derived factor 4##BC006211|SDF4|51150|stromal cell derived factor 4##BC008917|SDF4|51150|stromal cell derived factor 4##AK223079|SDF4|51150|stromal cell derived factor 4##AK222521|SDF4|51150|stromal cell derived factor 4##AK315517|SDF4|51150|stromal cell derived factor 4##AF132749|SDF4|51150|stromal cell derived factor 4##AK075352|SDF4|51150|stromal cell derived factor 4##BC022375|SDF4|51150|stromal cell derived factor 4##AK027277|SDF4|51150|stromal cell derived factor 4##AF153686|SDF4|51150|stromal cell derived factor 4##AF178986|SDF4|51150|stromal cell derived factor 4	0.99762	0.0	denovo_WM_7:-11:0.817
chr15	44101367	44101531	reg1001300.p2	5.857	+	TSC_hg19_v1_chr15_+_44092806 AK022435 AF161485 AF049613	-8647	+	NM_001199885 NM_016400 BC019262	-8830	+	BC113988 DQ103711 NM_001033517 BX647438	-9235	-	AB463886 CU690792 DQ893389 DQ896709 TSC_hg19_v1_chr15_-_44116882 U04209 BC023557 BC050742 AK312867 NM_005926	15409	-	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	17738	+	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	385901	-	AK022435|C15orf63|25764|chromosome 15 open reading frame 63##AF161485|C15orf63|25764|chromosome 15 open reading frame 63##AF049613|C15orf63|25764|chromosome 15 open reading frame 63##NM_001199885|C15orf63|25764|chromosome 15 open reading frame 63##NM_016400|C15orf63|25764|chromosome 15 open reading frame 63##BC019262|C15orf63|25764|chromosome 15 open reading frame 63##DQ103711|SERINC4|619189|serine incorporator 4##NM_001033517|SERINC4|619189|serine incorporator 4##BX647438|SERINC4|619189|serine incorporator 4##DQ893389|MFAP1|4236|microfibrillar-associated protein 1##DQ896709|MFAP1|4236|microfibrillar-associated protein 1##U04209|MFAP1|4236|microfibrillar-associated protein 1##BC023557|MFAP1|4236|microfibrillar-associated protein 1##BC050742|MFAP1|4236|microfibrillar-associated protein 1##AK312867|MFAP1|4236|microfibrillar-associated protein 1##NM_005926|MFAP1|4236|microfibrillar-associated protein 1##NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5	1.684555	0.0	denovo_WM_7:78:0.418	denovo_WM_7:94:0.839
chr2	8369926	8370106	reg1007851.p2	5.857	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1312429	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1352153	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1363313	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	452187	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	607703	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	773805	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	1.499623	0.0	denovo_WM_7:-4:0.472	denovo_WM_7:13:0.932
chr3	57676394	57676519	reg1007796.p1	5.857	+	TSC_hg19_v1_chr3_-_57583171 NM_001660	-93266	-	BC022866 TSC_hg19_v1_chr3_-_57583106 BC016325	-93337	-	TSC_hg19_v1_chr3_-_57583086 BC008753	-93373	-	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	2283	-	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	66746	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	317691	+	NM_001660|ARF4|378|ADP-ribosylation factor 4##BC022866|ARF4|378|ADP-ribosylation factor 4##BC016325|ARF4|378|ADP-ribosylation factor 4##BC008753|ARF4|378|ADP-ribosylation factor 4##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta	0.992926	0.0	denovo_WM_7:-34:0.314	denovo_WM_7:-35:0.314	denovo_WM_7:-36:0.314
chr2	12004162	12004274	reg1002491.p2	5.856	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-117443	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-193927	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-321375	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	853035	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	853698	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	854179	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	1.910212	0.0	denovo_WM_7:-30:0.436	denovo_WM_7:-54:0.427	denovo_WM_7:-55:0.426
chr1	212781188	212781363	reg1007553.p1	5.855	+	NM_001030287	-42600	+	TSC_hg19_v1_chr1_+_212606264 AF173937 NM_013349 AK074431 AK223135 AY762102 BC008823 AB126219 AF049672	-174963	+	TSC_hg19_v1_chr1_-_212588248 AK297200 NM_001198862 AK024066 NM_018252	-193023	-	NM_001040619 NM_001206484 NM_001206488 NM_001674 TSC_hg19_v1_chr1_+_212782102 AK294296	760	+	AK312998 TSC_hg19_v1_chr1_+_212782105 BC006322 L19871	832	+	NM_001206486 AB066566 AB078026 AB078027 AB528347 AY313926 AY313927 BT006996 CR450334 DQ892723 DQ895972 AB209032	7132	+	NM_001030287|ATF3|467|activating transcription factor 3##AF173937|NENF|29937|neudesin neurotrophic factor##NM_013349|NENF|29937|neudesin neurotrophic factor##AK074431|NENF|29937|neudesin neurotrophic factor##AK223135|NENF|29937|neudesin neurotrophic factor##AY762102|NENF|29937|neudesin neurotrophic factor##BC008823|NENF|29937|neudesin neurotrophic factor##AB126219|NENF|29937|neudesin neurotrophic factor##AF049672|NENF|29937|neudesin neurotrophic factor##AK297200|TMEM206|55248|transmembrane protein 206##NM_001198862|TMEM206|55248|transmembrane protein 206##AK024066|TMEM206|55248|transmembrane protein 206##NM_018252|TMEM206|55248|transmembrane protein 206##NM_001040619|ATF3|467|activating transcription factor 3##NM_001206484|ATF3|467|activating transcription factor 3##NM_001206488|ATF3|467|activating transcription factor 3##NM_001674|ATF3|467|activating transcription factor 3##AK294296|ATF3|467|activating transcription factor 3##AK312998|ATF3|467|activating transcription factor 3##BC006322|ATF3|467|activating transcription factor 3##L19871|ATF3|467|activating transcription factor 3##NM_001206486|ATF3|467|activating transcription factor 3##AB066566|ATF3|467|activating transcription factor 3##AB078026|ATF3|467|activating transcription factor 3##AB078027|ATF3|467|activating transcription factor 3##AY313926|ATF3|467|activating transcription factor 3##AY313927|ATF3|467|activating transcription factor 3##BT006996|ATF3|467|activating transcription factor 3##CR450334|ATF3|467|activating transcription factor 3##DQ892723|ATF3|467|activating transcription factor 3##DQ895972|ATF3|467|activating transcription factor 3##AB209032|ATF3|467|activating transcription factor 3	0.984051	0.0	denovo_WM_7:-18:0.945
chr19	14420897	14421024	reg1006336.p1	5.855	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-103912	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-160160	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-172969	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	71089	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	71295	+	TSC_hg19_v1_chr19_-_14529877 AK301847	108929	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.978438	0.0	denovo_WM_7:-63:0.931
chr16	63395095	63395225	reg1007351.p1	5.854	+	AK124734 NM_001796	-1324422	-	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-4626963	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-4676504	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	1760742	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	1760808	-	TSC_hg19_v1_chr16_-_65155987 AK297377	1760834	-	AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK297377|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	0.981431	0.996604	denovo_WM_7:30:0.981	CTCF.p2:-41:0.997
chr18	13893483	13893631	reg1008025.p1	5.854	+	BC095531 NM_005913	-68015	+	TSC_hg19_v1_chr18_+_13726671 AK296370 BC017816 BX647977 AK303842 BC005290 AK292561 AB007858 AF067791 NM_003799 AB020966 BC036798	-166867	+	TSC_hg19_v1_chr18_-_13726582 AK309506 NM_001098801 NM_152352	-166971	-	AK315319 BC094710 NM_000529 AK289381	21979	-	BC010705 AK096748 BC024227 BC037787 NM_145287	238900	-	TSC_hg19_v1_chr18_+_14179298 BC127726	285752	+	BC095531|MC5R|4161|melanocortin 5 receptor##NM_005913|MC5R|4161|melanocortin 5 receptor##AK296370|RNMT|8731|RNA (guanine-7-) methyltransferase##BC017816|RNMT|8731|RNA (guanine-7-) methyltransferase##BX647977|RNMT|8731|RNA (guanine-7-) methyltransferase##AK303842|RNMT|8731|RNA (guanine-7-) methyltransferase##BC005290|RNMT|8731|RNA (guanine-7-) methyltransferase##AK292561|RNMT|8731|RNA (guanine-7-) methyltransferase##AB007858|RNMT|8731|RNA (guanine-7-) methyltransferase##AF067791|RNMT|8731|RNA (guanine-7-) methyltransferase##NM_003799|RNMT|8731|RNA (guanine-7-) methyltransferase##AB020966|RNMT|8731|RNA (guanine-7-) methyltransferase##BC036798|RNMT|8731|RNA (guanine-7-) methyltransferase##AK309506|FAM210A|125228|family with sequence similarity 210, member A##NM_001098801|FAM210A|125228|family with sequence similarity 210, member A##NM_152352|FAM210A|125228|family with sequence similarity 210, member A##AK315319|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC094710|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##NM_000529|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##AK289381|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC010705|ZNF519|162655|zinc finger protein 519##AK096748|ZNF519|162655|zinc finger protein 519##BC024227|ZNF519|162655|zinc finger protein 519##BC037787|ZNF519|162655|zinc finger protein 519##NM_145287|ZNF519|162655|zinc finger protein 519##BC127726|ANKRD20A5P|440482|ankyrin repeat domain 20 family, member A5, pseudogene	0.0	0.576182	CTCF.p2:34:0.576
chr20	21529500	21529643	reg1009027.p1	5.854	+	NM_002509	-34908	-	NM_033176 TSC_hg19_v1_chr20_-_21378181	-151457	-	BC142960 TSC_hg19_v1_chr20_+_21283980 NM_012255 AK001573 AF064257 BC131775 AY382900 AK303312 AK314602 AL136841 AF152169 BC000315	-245596	+	TSC_hg19_v1_chr20_+_21686296 NM_006192	156723	+	TSC_hg19_v1_chr20_+_21686519 BC143791 BC143793	156962	+	BC006545 BC019288 AB464525 DQ892883 DQ896132 TSC_hg19_v1_chr20_-_22564902 AK301611 BC011780	1035345	-	NM_002509|NKX2-2|4821|NK2 homeobox 2##NM_033176|NKX2-4|644524|NK2 homeobox 4##BC142960|XRN2|22803|5'-3' exoribonuclease 2##NM_012255|XRN2|22803|5'-3' exoribonuclease 2##AK001573|XRN2|22803|5'-3' exoribonuclease 2##AF064257|XRN2|22803|5'-3' exoribonuclease 2##BC131775|XRN2|22803|5'-3' exoribonuclease 2##AY382900|XRN2|22803|5'-3' exoribonuclease 2##AK303312|XRN2|22803|5'-3' exoribonuclease 2##AK314602|XRN2|22803|5'-3' exoribonuclease 2##AL136841|XRN2|22803|5'-3' exoribonuclease 2##AF152169|XRN2|22803|5'-3' exoribonuclease 2##BC000315|XRN2|22803|5'-3' exoribonuclease 2##NM_006192|PAX1|5075|paired box 1##BC143791|PAX1|5075|paired box 1##BC143793|PAX1|5075|paired box 1##BC006545|FOXA2|3170|forkhead box A2##BC019288|FOXA2|3170|forkhead box A2##DQ892883|FOXA2|3170|forkhead box A2##DQ896132|FOXA2|3170|forkhead box A2##AK301611|FOXA2|3170|forkhead box A2##BC011780|FOXA2|3170|forkhead box A2	0.992695	0.0	denovo_WM_7:58:0.476	denovo_WM_7:59:0.425
chr12	15569172	15569276	reg1008609.p2	5.853	+	AK289784 TSC_hg19_v1_chr12_+_15475476 BC035960 U20489 BC126201 BC126203 Z48541 CU690232	-93673	+	NM_002848 NM_030667 TSC_hg19_v1_chr12_+_15475264 AB209729	-93964	+	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	-194874	-	NM_030668 NM_030669 NM_030670 NM_030671 AF152378 AF187042 AF187043 AF187044	130057	+	TSC_hg19_v1_chr12_+_15699551 AK290982	130353	+	TSC_hg19_v1_chr12_-_15815073 AK316134	245916	-	AK289784|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC035960|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U20489|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126201|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126203|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##Z48541|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_002848|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030667|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AB209729|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_030668|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030669|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030670|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030671|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF152378|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187042|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187043|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187044|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8	0.983083	0.0	denovo_WM_7:38:0.695
chr3	130466487	130466620	reg1003553.p3	5.852	+	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	-950	-	AM774225 NM_001102608	-187376	+	EU085556 NM_153264 AM906078	-402135	+	NM_001199180 NM_001199181 NM_001199182 AK296470	102853	+	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	146592	+	AK301388 BC069265 AK027806 NM_014065 AK294156	279087	-	BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##EU085556|COL6A5|256076|collagen, type VI, alpha 5##NM_153264|COL6A5|256076|collagen, type VI, alpha 5##AM906078|COL6A5|256076|collagen, type VI, alpha 5##NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK301388|ASTE1|28990|asteroid homolog 1 (Drosophila)##BC069265|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK027806|ASTE1|28990|asteroid homolog 1 (Drosophila)##NM_014065|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK294156|ASTE1|28990|asteroid homolog 1 (Drosophila)	0.994604	0.0	denovo_WM_7:43:0.203	denovo_WM_7:46:0.320	denovo_WM_7:47:0.207
chr5	113754559	113754704	reg1005718.p1	5.851	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	-56170	+	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	-56582	+	TSC_hg19_v1_chr5_+_112849405 AK096486 NM_022828 AK310855 BC019100 BC137285	-905235	+	BC015371 NM_170775 BC040722	14618	+	TSC_hg19_v1_chr5_-_114505606 AK316422 AK296389	750973	-	AB196558 AJ272269 BC130334 AK125426 BC045164 BC046096 NM_001017397 NM_001017398 NM_018700	761356	-	BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK096486|YTHDC2|64848|YTH domain containing 2##NM_022828|YTHDC2|64848|YTH domain containing 2##AK310855|YTHDC2|64848|YTH domain containing 2##BC019100|YTHDC2|64848|YTH domain containing 2##BC137285|YTHDC2|64848|YTH domain containing 2##BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK316422|TRIM36|55521|tripartite motif containing 36##AK296389|TRIM36|55521|tripartite motif containing 36##AB196558|TRIM36|55521|tripartite motif containing 36##AJ272269|TRIM36|55521|tripartite motif containing 36##BC130334|TRIM36|55521|tripartite motif containing 36##AK125426|TRIM36|55521|tripartite motif containing 36##BC045164|TRIM36|55521|tripartite motif containing 36##BC046096|TRIM36|55521|tripartite motif containing 36##NM_001017397|TRIM36|55521|tripartite motif containing 36##NM_001017398|TRIM36|55521|tripartite motif containing 36##NM_018700|TRIM36|55521|tripartite motif containing 36	0.0	0.0	
chr12	15724037	15724188	reg1004486.p2	5.850	+	TSC_hg19_v1_chr12_+_15699551 AK290982	-24535	+	NM_030668 NM_030669 NM_030670 NM_030671 AF152378 AF187042 AF187043 AF187044	-24831	+	AK289784 TSC_hg19_v1_chr12_+_15475476 BC035960 U20489 BC126201 BC126203 Z48541 CU690232	-248561	+	TSC_hg19_v1_chr12_-_15815073 AK316134	91028	-	TSC_hg19_v1_chr12_-_15865848 AK292931	141752	-	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	218120	-	AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030668|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030669|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030670|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030671|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF152378|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187042|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187043|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187044|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK289784|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC035960|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U20489|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126201|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126203|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##Z48541|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8	0.0	0.0	
chr17	18820621	18820788	reg1007129.p2	5.850	+	NM_001243940 AB007851 BC101670 BC101672 BC143475	-51883	+	TSC_hg19_v1_chr17_+_18761445 BC106050 AK304544	-59234	+	NM_001243941 NM_002767 TSC_hg19_v1_chr17_+_18761443 AK313087	-59292	+	AK057946 NM_001042450 NM_152351 AK298345 BC062617 BC034380	34800	+	TSC_hg19_v1_chr17_-_18908078 NM_001039999	87375	-	BT019981 CR541941 CR541966 AB528891 CU687638 BC035856 U52518 BC063035 NM_006613	129582	-	NM_001243940|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AB007851|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101670|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101672|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC143475|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC106050|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK304544|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243941|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_002767|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK313087|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK057946|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001042450|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_152351|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##AK298345|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC062617|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC034380|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001039999|FAM83G|644815|family with sequence similarity 83, member G##BT019981|GRAP|10750|GRB2-related adaptor protein##CR541941|GRAP|10750|GRB2-related adaptor protein##CR541966|GRAP|10750|GRB2-related adaptor protein##BC035856|GRAP|10750|GRB2-related adaptor protein##U52518|GRAP|10750|GRB2-related adaptor protein##BC063035|GRAP|10750|GRB2-related adaptor protein##NM_006613|GRAP|10750|GRB2-related adaptor protein	0.995632	0.0	denovo_WM_7:13:0.815
chr20	62605394	62605539	reg1008120.p2	5.850	+	TSC_hg19_v1_chr20_-_62601275 BC125129 BC125128 NM_020713	-4193	-	TSC_hg19_v1_chr20_-_62587770 BC033078 AJ605558 AK000524 AK223220 AK301602 AK222559 NM_017859	-17691	-	AK303688 NM_001193379	-22964	-	TSC_hg19_v1_chr20_-_62610996 BC067362 NM_080621	5528	-	TSC_hg19_v1_chr20_-_62611342 BC041436	5877	-	TSC_hg19_v1_chr20_+_62612424 NM_012469	6956	+	BC125129|ZNF512B|57473|zinc finger protein 512B##BC125128|ZNF512B|57473|zinc finger protein 512B##NM_020713|ZNF512B|57473|zinc finger protein 512B##BC033078|UCKL1|54963|uridine-cytidine kinase 1-like 1##AJ605558|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK000524|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK223220|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK301602|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK222559|UCKL1|54963|uridine-cytidine kinase 1-like 1##NM_017859|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK303688|UCKL1|54963|uridine-cytidine kinase 1-like 1##NM_001193379|UCKL1|54963|uridine-cytidine kinase 1-like 1##BC067362|SAMD10|140700|sterile alpha motif domain containing 10##NM_080621|SAMD10|140700|sterile alpha motif domain containing 10##BC041436|SAMD10|140700|sterile alpha motif domain containing 10##NM_012469|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)	0.949712	0.999575	denovo_WM_7:34:0.501	CTCF.p2:-50:1.000
chr22	29276107	29276259	reg1006746.p2	5.850	+	TSC_hg19_v1_chr22_+_29196668 AF086143	-79500	+	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	-79616	-	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	-79692	-	TSC_hg19_v1_chr22_+_29279579 NM_001206998 AB051436 CR456397	3594	+	AK096397 NM_032173	37193	+	TSC_hg19_v1_chr22_+_29449893 BC042614	173742	+	BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##NM_001206998|ZNRF3|84133|zinc and ring finger 3##AB051436|ZNRF3|84133|zinc and ring finger 3##CR456397|ZNRF3|84133|zinc and ring finger 3##AK096397|ZNRF3|84133|zinc and ring finger 3##NM_032173|ZNRF3|84133|zinc and ring finger 3##BC042614|ZNRF3|84133|zinc and ring finger 3	0.99858	0.0	denovo_WM_7:55:0.494	denovo_WM_7:56:0.494
chrX	9309586	9309766	reg1000869.p1	5.850	+	BC120955 BC120956 NM_205849	-308574	-	BC113449 BC143805 NM_001171186 BC112022 AF494343 NM_174951	-540276	-	TSC_hg19_v1_chrX_-_8700193 BC137426 BC137427 M97252 NM_000216 S60085	-609469	-	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	121671	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	123558	+	Z48804 BC015657 BC068977 NM_000273	424284	-	BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##BC113449|FAM9A|171482|family with sequence similarity 9, member A##BC143805|FAM9A|171482|family with sequence similarity 9, member A##NM_001171186|FAM9A|171482|family with sequence similarity 9, member A##BC112022|FAM9A|171482|family with sequence similarity 9, member A##AF494343|FAM9A|171482|family with sequence similarity 9, member A##NM_174951|FAM9A|171482|family with sequence similarity 9, member A##BC137426|KAL1|3730|Kallmann syndrome 1 sequence##BC137427|KAL1|3730|Kallmann syndrome 1 sequence##M97252|KAL1|3730|Kallmann syndrome 1 sequence##NM_000216|KAL1|3730|Kallmann syndrome 1 sequence##S60085|KAL1|3730|Kallmann syndrome 1 sequence##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143	0.991811	0.0	denovo_WM_7:89:0.560	denovo_WM_7:90:0.322
chr10	80838237	80838390	reg1004661.p1	5.849	+	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	-9525	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	-1044682	+	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	-1044757	+	TSC_hg19_v1_chr10_+_80899458 AK025812	61171	+	TSC_hg19_v1_chr10_+_81003207 AB033050	164817	+	AK299728 TSC_hg19_v1_chr10_+_81065901	227575	+	BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##AK025812|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AB033050|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK299728|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.9996	0.0	
chr2	16899598	16899735	reg1002451.p1	5.849	+	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	-52522	-	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-817499	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-817671	+	DQ860102 NM_001099218	800039	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	822221	+	TSC_hg19_v1_chr2_+_17721989 AF039555 U14747 AB001104	822354	+	BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1##AF039555|VSNL1|7447|visinin-like 1##U14747|VSNL1|7447|visinin-like 1##AB001104|VSNL1|7447|visinin-like 1	0.0	0.0	
chr2	47979629	47979798	reg1001011.p1	5.849	+	TSC_hg19_v1_chr2_-_47918421 D28393	-61294	-	AF287302 NM_022055 BC047749	-182230	-	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	-349396	+	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	30583	+	AK304140 AK315108 NM_025133	136138	-	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	153080	-	D28393|RPL18A|6142|ribosomal protein L18a##AF287302|KCNK12|56660|potassium channel, subfamily K, member 12##NM_022055|KCNK12|56660|potassium channel, subfamily K, member 12##BC047749|KCNK12|56660|potassium channel, subfamily K, member 12##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11	0.0	0.0	
chr5	89317009	89317164	reg1008604.p1	5.849	+	AL833268 AL833274 NM_001131005 NM_001193347	-1117192	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1131822	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-1131966	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	388453	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	453096	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	453492	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.982289	0.0	denovo_WM_7:-27:0.451	denovo_WM_7:-28:0.451
chr9	132697331	132697452	reg1006961.p2	5.849	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-99626	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-99669	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-99707	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	107963	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	108097	-	BC039728 NM_001136557 NM_001136558 NM_020960	118593	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.996296	0.0	
chr1	161734595	161734772	reg1008534.p2	5.848	+	TSC_hg19_v1_chr1_+_161719575 BC006286 AF119226 NM_007240 DQ892766 DQ896011 CU675333 BT006633	-15117	+	AY670683 AY670684 AY670685 AY670686 AY670687 NM_001002901 AY786314	-42228	+	AF531423 NM_001184866 NM_001184867 NM_001184870 NM_001184871 NM_001184872 NM_001184873 NM_032738	-57922	+	NM_007348 TSC_hg19_v1_chr1_+_161736080 AB015856	1387	+	AF005887 AK290498 TSC_hg19_v1_chr1_+_161736109	1427	+	TSC_hg19_v1_chr1_+_161736145 BC014969 BC071997 AB208929 CU677145	1453	+	BC006286|DUSP12|11266|dual specificity phosphatase 12##AF119226|DUSP12|11266|dual specificity phosphatase 12##NM_007240|DUSP12|11266|dual specificity phosphatase 12##DQ892766|DUSP12|11266|dual specificity phosphatase 12##DQ896011|DUSP12|11266|dual specificity phosphatase 12##BT006633|DUSP12|11266|dual specificity phosphatase 12##AY670683|FCRLB|127943|Fc receptor-like B##AY670684|FCRLB|127943|Fc receptor-like B##AY670685|FCRLB|127943|Fc receptor-like B##AY670686|FCRLB|127943|Fc receptor-like B##AY670687|FCRLB|127943|Fc receptor-like B##NM_001002901|FCRLB|127943|Fc receptor-like B##AY786314|FCRLB|127943|Fc receptor-like B##AF531423|FCRLA|84824|Fc receptor-like A##NM_001184866|FCRLA|84824|Fc receptor-like A##NM_001184867|FCRLA|84824|Fc receptor-like A##NM_001184870|FCRLA|84824|Fc receptor-like A##NM_001184871|FCRLA|84824|Fc receptor-like A##NM_001184872|FCRLA|84824|Fc receptor-like A##NM_001184873|FCRLA|84824|Fc receptor-like A##NM_032738|FCRLA|84824|Fc receptor-like A##NM_007348|ATF6|22926|activating transcription factor 6##AB015856|ATF6|22926|activating transcription factor 6##AF005887|ATF6|22926|activating transcription factor 6##AK290498|ATF6|22926|activating transcription factor 6##BC014969|ATF6|22926|activating transcription factor 6##BC071997|ATF6|22926|activating transcription factor 6##AB208929|ATF6|22926|activating transcription factor 6	1.045062	0.0	
chr8	66706596	66706710	reg1007557.p2	5.848	+	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	-5402	-	NM_001145838 CU692168 BX537854 D13634	-124486	+	NM_001145839 NM_014637 TSC_hg19_v1_chr8_+_66556973 AK316202 BX647507 AK304716 BC036116 BC043498 AK298945	-149693	+	NM_001242318	47315	-	TSC_hg19_v1_chr8_-_66754300 AK292680	47639	-	NM_033105 BC016742 AF368276 AL133660	227166	+	HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_001145838|MTFR1|9650|mitochondrial fission regulator 1##BX537854|MTFR1|9650|mitochondrial fission regulator 1##D13634|MTFR1|9650|mitochondrial fission regulator 1##NM_001145839|MTFR1|9650|mitochondrial fission regulator 1##NM_014637|MTFR1|9650|mitochondrial fission regulator 1##AK316202|MTFR1|9650|mitochondrial fission regulator 1##BX647507|MTFR1|9650|mitochondrial fission regulator 1##AK304716|MTFR1|9650|mitochondrial fission regulator 1##BC036116|MTFR1|9650|mitochondrial fission regulator 1##BC043498|MTFR1|9650|mitochondrial fission regulator 1##AK298945|MTFR1|9650|mitochondrial fission regulator 1##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK292680|PDE7A|5150|phosphodiesterase 7A##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	0.896578	0.0	denovo_WM_7:15:0.622
chr1	119764981	119765125	reg1006860.p1	5.847	+	TSC_hg19_v1_chr1_-_119683274 BC021722 CU692202 BC039889 AK223197 AJ242739 AK296799 BC044575 AK313740 AK300295 NM_015836 NM_201263	-81784	-	TSC_hg19_v1_chr1_+_119683039 BC063600 BC043601	-82027	+	AK127536 NM_152380	-232875	-	TSC_hg19_v1_chr1_+_119911431 AK298289 NM_001005783 NM_016527 BC020863 AF231917 AF203975 AY513277	146391	+	NM_001166120	192500	+	NM_000198 AK222997 BC038419 AK313413 CR627415 M67466	192708	+	BC021722|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC039889|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK223197|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AJ242739|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK296799|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC044575|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK313740|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK300295|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_015836|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_201263|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK127536|TBX15|6913|T-box 15##NM_152380|TBX15|6913|T-box 15##AK298289|HAO2|51179|hydroxyacid oxidase 2 (long chain)##NM_001005783|HAO2|51179|hydroxyacid oxidase 2 (long chain)##NM_016527|HAO2|51179|hydroxyacid oxidase 2 (long chain)##BC020863|HAO2|51179|hydroxyacid oxidase 2 (long chain)##AF231917|HAO2|51179|hydroxyacid oxidase 2 (long chain)##AF203975|HAO2|51179|hydroxyacid oxidase 2 (long chain)##AY513277|HAO2|51179|hydroxyacid oxidase 2 (long chain)##NM_001166120|HSD3B2|3284|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2##NM_000198|HSD3B2|3284|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2##AK222997|HSD3B2|3284|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2##BC038419|HSD3B2|3284|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2##AK313413|HSD3B2|3284|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2##M67466|HSD3B2|3284|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	0.0	0.0	
chr8	19528123	19528283	reg1008124.p1	5.847	+	BX649103 NM_001130518	-68173	-	TSC_hg19_v1_chr8_+_19171505 NM_001174160 NM_022071 AK024799 AK293301 BC082982 NM_001174159	-356920	+	TSC_hg19_v1_chr8_-_18871214 AK091317 AX746913 NM_015310	-656917	-	AY358441 NM_018371	11890	-	AK314625 TSC_hg19_v1_chr8_-_19615422	87214	-	TSC_hg19_v1_chr8_+_19674936 NM_018142	146718	+	BX649103|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001130518|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001174160|SH2D4A|63898|SH2 domain containing 4A##NM_022071|SH2D4A|63898|SH2 domain containing 4A##AK024799|SH2D4A|63898|SH2 domain containing 4A##AK293301|SH2D4A|63898|SH2 domain containing 4A##BC082982|SH2D4A|63898|SH2 domain containing 4A##NM_001174159|SH2D4A|63898|SH2 domain containing 4A##AK091317|PSD3|23362|pleckstrin and Sec7 domain containing 3##NM_015310|PSD3|23362|pleckstrin and Sec7 domain containing 3##AY358441|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018371|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##AK314625|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018142|INTS10|55174|integrator complex subunit 10	1.459066	0.0	denovo_WM_7:-18:0.442	denovo_WM_7:-33:0.499
chr10	173975	174155	reg1006740.p1	5.846	+	BC101270 BC101271 NM_177987	-78892	-	None	None	None	None	None	None	NM_006624 NM_001202465 NM_001202466 NM_212479 TSC_hg19_v1_chr10_+_180423	6348	+	TSC_hg19_v1_chr10_+_181412 BC091489 NM_001202464	7355	+	BC012586 X86098 NM_001202467 NM_001202468 AB385196 DQ335452 DQ335453 DQ335454 DQ335455 AK296427	51881	+	BC101270|TUBB8|347688|tubulin, beta 8 class VIII##BC101271|TUBB8|347688|tubulin, beta 8 class VIII##NM_177987|TUBB8|347688|tubulin, beta 8 class VIII##NM_006624|ZMYND11|10771|zinc finger, MYND-type containing 11##NM_001202465|ZMYND11|10771|zinc finger, MYND-type containing 11##NM_001202466|ZMYND11|10771|zinc finger, MYND-type containing 11##NM_212479|ZMYND11|10771|zinc finger, MYND-type containing 11##BC091489|ZMYND11|10771|zinc finger, MYND-type containing 11##NM_001202464|ZMYND11|10771|zinc finger, MYND-type containing 11##BC012586|ZMYND11|10771|zinc finger, MYND-type containing 11##X86098|ZMYND11|10771|zinc finger, MYND-type containing 11##NM_001202467|ZMYND11|10771|zinc finger, MYND-type containing 11##NM_001202468|ZMYND11|10771|zinc finger, MYND-type containing 11##DQ335452|ZMYND11|10771|zinc finger, MYND-type containing 11##DQ335453|ZMYND11|10771|zinc finger, MYND-type containing 11##DQ335454|ZMYND11|10771|zinc finger, MYND-type containing 11##DQ335455|ZMYND11|10771|zinc finger, MYND-type containing 11##AK296427|ZMYND11|10771|zinc finger, MYND-type containing 11	0.881257	0.0	denovo_WM_7:26:0.522
chr1	151169121	151169207	reg1000357.p3	5.846	+	TSC_hg19_v1_chr1_-_151162674 AK310045 DQ655941	-6491	-	DQ892940 DQ896189 AB464341 BT019356 BT019357 AK222935 AK222939 TSC_hg19_v1_chr1_-_151162644 BC003151 D43642 NM_005997 AK225130 AK297565	-6543	-	AF165217 AK313280 AK092700 AK300675 AX747678 BC017810 BX647346 AF177173 NM_013353	-20679	-	TSC_hg19_v1_chr1_+_151171050 AK309826 NM_001135636 NM_001135637 NM_001135638 NM_003557 AK295691 BC007833 U78576 BC007005 U78577 U78575 AK291015	1869	+	TSC_hg19_v1_chr1_+_151227206 NM_002810 U24704	58033	+	TSC_hg19_v1_chr1_+_151227209 BC072008	58057	+	AK310045|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ655941|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ892940|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##DQ896189|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019356|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BT019357|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222935|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK222939|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##BC003151|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##D43642|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##NM_005997|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK225130|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AK297565|VPS72|6944|vacuolar protein sorting 72 homolog (S. cerevisiae)##AF165217|TMOD4|29765|tropomodulin 4 (muscle)##AK313280|TMOD4|29765|tropomodulin 4 (muscle)##AK092700|TMOD4|29765|tropomodulin 4 (muscle)##AK300675|TMOD4|29765|tropomodulin 4 (muscle)##BC017810|TMOD4|29765|tropomodulin 4 (muscle)##BX647346|TMOD4|29765|tropomodulin 4 (muscle)##AF177173|TMOD4|29765|tropomodulin 4 (muscle)##NM_013353|TMOD4|29765|tropomodulin 4 (muscle)##AK309826|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135636|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135637|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_001135638|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_003557|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK295691|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##BC007833|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78576|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78577|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##U78575|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##AK291015|PIP5K1A|8394|phosphatidylinositol-4-phosphate 5-kinase, type I, alpha##NM_002810|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##U24704|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC072008|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	0.0	0.0	
chr15	90325148	90325303	reg1007670.p1	5.846	+	BC111413 NM_001039958	-5637	+	AL357571 TSC_hg19_v1_chr15_-_90294395 EU446875 NM_018670 BC006219	-30776	-	BC064626 NM_020212 AK304683 AK097525	-91182	+	AK298134 TSC_hg19_v1_chr15_-_90347178	21950	-	AK298339 TSC_hg19_v1_chr15_-_90347590	22345	-	AB462940 X13276 TSC_hg19_v1_chr15_-_90349860 BC058928 M22324	24651	-	BC111413|MESP2|145873|mesoderm posterior 2 homolog (mouse)##NM_001039958|MESP2|145873|mesoderm posterior 2 homolog (mouse)##AL357571|MESP1|55897|mesoderm posterior 1 homolog (mouse)##EU446875|MESP1|55897|mesoderm posterior 1 homolog (mouse)##NM_018670|MESP1|55897|mesoderm posterior 1 homolog (mouse)##BC006219|MESP1|55897|mesoderm posterior 1 homolog (mouse)##BC064626|WDR93|56964|WD repeat domain 93##NM_020212|WDR93|56964|WD repeat domain 93##AK304683|WDR93|56964|WD repeat domain 93##AK097525|WDR93|56964|WD repeat domain 93##AK298134|ANPEP|290|alanyl (membrane) aminopeptidase##AK298339|ANPEP|290|alanyl (membrane) aminopeptidase##X13276|ANPEP|290|alanyl (membrane) aminopeptidase##BC058928|ANPEP|290|alanyl (membrane) aminopeptidase##M22324|ANPEP|290|alanyl (membrane) aminopeptidase	1.287785	0.0	denovo_WM_7:-32:0.947
chr9	71773194	71773313	reg1007236.p1	5.846	+	AF083893 TSC_hg19_v1_chr9_+_71736397	-36842	+	NM_001170414 TSC_hg19_v1_chr9_+_71736198 AK295016	-37052	+	TSC_hg19_v1_chr9_+_71650693 BC048097 BC023633 CU690546	-122566	+	NM_001170630 NM_004817 NM_201629 BC027592 TSC_hg19_v1_chr9_+_71789110	15787	+	TSC_hg19_v1_chr9_+_71789197 AF083892 BC028426 AF489824 L27476 AB385223 AM392689 AM392712 AM392803 AM392967	15966	+	NM_001170415 AK302483 AK295034 NM_001170416	46748	+	AF083893|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170414|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295016|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC048097|FXN|2395|frataxin##BC023633|FXN|2395|frataxin##NM_001170630|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_004817|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_201629|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC027592|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF083892|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC028426|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF489824|TJP2|9414|tight junction protein 2 (zona occludens 2)##L27476|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392689|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392712|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392803|TJP2|9414|tight junction protein 2 (zona occludens 2)##AM392967|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170415|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK302483|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295034|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170416|TJP2|9414|tight junction protein 2 (zona occludens 2)	0.999703	0.0	
chr1	20244690	20244839	reg1004403.p1	5.844	+	TSC_hg19_v1_chr1_+_20208923 AB385337	-35801	+	TSC_hg19_v1_chr1_+_20208920 AB007928	-35850	+	TSC_hg19_v1_chr1_+_20208887 NM_015207	-35900	+	AB464018 AF189279 BC069116 NM_014589	5316	-	M22430 AK291302 NM_001161729	61358	-	BC005919 NM_000300 NM_001161727 NM_001161728	62155	-	AB007928|OTUD3|23252|OTU domain containing 3##NM_015207|OTUD3|23252|OTU domain containing 3##AF189279|PLA2G2E|30814|phospholipase A2, group IIE##BC069116|PLA2G2E|30814|phospholipase A2, group IIE##NM_014589|PLA2G2E|30814|phospholipase A2, group IIE##M22430|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##AK291302|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161729|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##BC005919|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_000300|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161727|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161728|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)	0.0	0.921784	CTCF.p2:-85:0.922
chr12	120451779	120451959	reg1009268.p1	5.844	+	TSC_hg19_v1_chr12_+_120427616 AK129960 NM_207311 U88834	-24271	+	TSC_hg19_v1_chr12_-_120315112 AY209000 AY257469 BC008127 AY681966 NM_001206999 NM_007174	-136776	-	AK123136 TSC_hg19_v1_chr12_-_120241305	-210572	-	AF498960 BT020024 CR536486 CR541683 CU677517 DQ890586 DQ890603 DQ893750 AB528529 TSC_hg19_v1_chr12_-_120554547 X79781 AK304620	102632	-	TSC_hg19_v1_chr12_-_120554551 AK312538	102684	-	BC015931 TSC_hg19_v1_chr12_-_120554557	102688	-	AK129960|CCDC64|92558|coiled-coil domain containing 64##NM_207311|CCDC64|92558|coiled-coil domain containing 64##U88834|CCDC64|92558|coiled-coil domain containing 64##AY209000|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY257469|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##BC008127|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY681966|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_001206999|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_007174|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK123136|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AF498960|RAB35|11021|RAB35, member RAS oncogene family##BT020024|RAB35|11021|RAB35, member RAS oncogene family##CR536486|RAB35|11021|RAB35, member RAS oncogene family##CR541683|RAB35|11021|RAB35, member RAS oncogene family##DQ890586|RAB35|11021|RAB35, member RAS oncogene family##DQ890603|RAB35|11021|RAB35, member RAS oncogene family##DQ893750|RAB35|11021|RAB35, member RAS oncogene family##X79781|RAB35|11021|RAB35, member RAS oncogene family##AK304620|RAB35|11021|RAB35, member RAS oncogene family##AK312538|RAB35|11021|RAB35, member RAS oncogene family##BC015931|RAB35|11021|RAB35, member RAS oncogene family	0.0	0.0	
chr3	331545	331725	reg1005382.p1	5.844	+	TSC_hg19_v1_chr3_+_239671 AK055236	-91964	+	TSC_hg19_v1_chr3_+_238541 AF002246	-93043	+	TSC_hg19_v1_chr3_+_238445 AB209329	-93186	+	NM_001253388 BC104918 BC143496 BC143498 AB384920	29777	+	AK126307 TSC_hg19_v1_chr3_+_577916	246280	+	AK314220 BC036338 AB003592 NM_014461 BC113118 AK307814	803028	+	AK055236|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##AF002246|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##AB209329|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##NM_001253388|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##BC104918|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##BC143496|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##BC143498|CHL1|10752|cell adhesion molecule with homology to L1CAM (close homolog of L1)##AK314220|CNTN6|27255|contactin 6##BC036338|CNTN6|27255|contactin 6##AB003592|CNTN6|27255|contactin 6##NM_014461|CNTN6|27255|contactin 6##BC113118|CNTN6|27255|contactin 6##AK307814|CNTN6|27255|contactin 6	0.994629	0.0	
chr8	67400745	67400884	reg1004924.p1	5.844	+	NM_144650 AY033237 AK056992 AK300881 BC047492 BC064634 AK293530 AK300243 AK294114 BC110290	-56082	+	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	-59508	+	BC002599 BC011031 AK075431 NM_000756	-310047	-	NM_152765	4676	+	BC032233 NM_001080416 NM_001144755 TSC_hg19_v1_chr8_-_67525502	124660	-	AM392649 AM393766 TSC_hg19_v1_chr8_-_67579266	178417	-	NM_144650|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AY033237|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK056992|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300881|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC047492|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC064634|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK293530|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300243|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK294114|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC110290|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##NM_152765|C8orf46|254778|chromosome 8 open reading frame 46##BC032233|LOC645895|645895|uncharacterized LOC645895##NM_001080416|MYBL1|4603|v-myb myeloblastosis viral oncogene homolog (avian)-like 1##NM_001144755|MYBL1|4603|v-myb myeloblastosis viral oncogene homolog (avian)-like 1##AM392649|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##AM393766|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1	0.0	0.0	
chr1	244766893	244767014	reg1006705.p1	5.843	+	NM_001130957 NM_001242340 NM_173807 TSC_hg19_v1_chr1_+_244624690 BC032859 BC028392 AK303059 BX648685 AK302609 DQ891006 EU176575 CU689566	-142252	+	TSC_hg19_v1_chr1_-_244615392 AK308749 NM_001126	-151615	-	CU680302 EU831433 EU831525 TSC_hg19_v1_chr1_-_244615212 AK025514 AK303886 BC012356	-151777	-	TSC_hg19_v1_chr1_+_244816350 NM_016076	49398	+	AK314664 TSC_hg19_v1_chr1_+_244816381	49428	+	TSC_hg19_v1_chr1_+_244816428 BC004485 BC020640	49455	+	NM_001130957|C1orf101|257044|chromosome 1 open reading frame 101##NM_001242340|C1orf101|257044|chromosome 1 open reading frame 101##NM_173807|C1orf101|257044|chromosome 1 open reading frame 101##BC032859|C1orf101|257044|chromosome 1 open reading frame 101##BC028392|C1orf101|257044|chromosome 1 open reading frame 101##AK303059|C1orf101|257044|chromosome 1 open reading frame 101##BX648685|C1orf101|257044|chromosome 1 open reading frame 101##AK302609|C1orf101|257044|chromosome 1 open reading frame 101##DQ891006|C1orf101|257044|chromosome 1 open reading frame 101##EU176575|C1orf101|257044|chromosome 1 open reading frame 101##AK308749|ADSS|159|adenylosuccinate synthase##NM_001126|ADSS|159|adenylosuccinate synthase##EU831433|ADSS|159|adenylosuccinate synthase##EU831525|ADSS|159|adenylosuccinate synthase##AK025514|ADSS|159|adenylosuccinate synthase##AK303886|ADSS|159|adenylosuccinate synthase##BC012356|ADSS|159|adenylosuccinate synthase##NM_016076|PPPDE1|51029|PPPDE peptidase domain containing 1##AK314664|PPPDE1|51029|PPPDE peptidase domain containing 1##BC004485|PPPDE1|51029|PPPDE peptidase domain containing 1##BC020640|PPPDE1|51029|PPPDE peptidase domain containing 1	0.99967	0.998793	denovo_WM_7:19:0.842	CTCF.p2:-43:0.999
chr6	105910470	105910620	reg1006164.p1	5.843	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-59550	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-59587	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-59699	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	623651	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	623690	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	636259	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.745215	0.0	denovo_WM_7:-15:0.622
chr1	8877497	8877642	reg1000188.p1	5.842	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-393552	-	NM_001080397	-493180	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-791171	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	23	-	GU170215 NM_001201483	54065	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	61138	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.999643	0.0	denovo_WM_7:-41:0.842
chr2	238907371	238907551	reg1000923.p2	5.842	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	-31758	+	TSC_hg19_v1_chr2_+_238875673 AK290063	-31781	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	-31837	+	AB209458 NM_016510 TSC_hg19_v1_chr2_+_238969639	62140	+	TSC_hg19_v1_chr2_+_238969669 AK301009 BC007891 AF175767 AK298409 DQ893234 DQ896564 CU675851	62219	+	TSC_hg19_v1_chr2_+_238969747 BC000586 AK293283	62306	+	BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AB209458|SCLY|51540|selenocysteine lyase##NM_016510|SCLY|51540|selenocysteine lyase##AK301009|SCLY|51540|selenocysteine lyase##BC007891|SCLY|51540|selenocysteine lyase##AF175767|SCLY|51540|selenocysteine lyase##AK298409|SCLY|51540|selenocysteine lyase##DQ893234|SCLY|51540|selenocysteine lyase##DQ896564|SCLY|51540|selenocysteine lyase##BC000586|SCLY|51540|selenocysteine lyase##AK293283|SCLY|51540|selenocysteine lyase	0.0	0.0	
chr2	242264312	242264463	reg1009428.p1	5.842	+	TSC_hg19_v1_chr2_+_242255366 AK294563	-9021	+	TSC_hg19_v1_chr2_+_242255355 D28540	-9032	+	TSC_hg19_v1_chr2_+_242255342 BX648000	-9046	+	TSC_hg19_v1_chr2_+_242295703 NM_014808 AK300435 AB018336 BC021301	31313	+	BT019961 CU675833 CU677445 DQ893230 DQ896559 AB529004 D63780 X99325 TSC_hg19_v1_chr2_-_242447784 BC015793	183240	-	TSC_hg19_v1_chr2_-_242447969 AK092161 AK302751 AK297374 AK301214 AK291808 AK291947	183572	-	AK294563|SEPT2|4735|septin 2##D28540|SEPT2|4735|septin 2##BX648000|SEPT2|4735|septin 2##NM_014808|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AK300435|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AB018336|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##BC021301|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##BT019961|STK25|10494|serine/threonine kinase 25##DQ893230|STK25|10494|serine/threonine kinase 25##DQ896559|STK25|10494|serine/threonine kinase 25##D63780|STK25|10494|serine/threonine kinase 25##X99325|STK25|10494|serine/threonine kinase 25##BC015793|STK25|10494|serine/threonine kinase 25##AK092161|STK25|10494|serine/threonine kinase 25##AK302751|STK25|10494|serine/threonine kinase 25##AK297374|STK25|10494|serine/threonine kinase 25##AK301214|STK25|10494|serine/threonine kinase 25##AK291808|STK25|10494|serine/threonine kinase 25##AK291947|STK25|10494|serine/threonine kinase 25	1.771266	0.0	denovo_WM_7:3:0.651	denovo_WM_7:106:0.838
chr1	235151365	235151523	reg1004121.p1	5.841	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-255670	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-406198	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-407586	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	140645	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	140787	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	173119	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.996211	0.0	denovo_WM_7:-53:0.347	denovo_WM_7:-55:0.596
chr12	42877589	42877769	reg1002917.p1	5.841	+	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	-263	-	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	-157701	+	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	-157804	-	AK122881 TSC_hg19_v1_chr12_-_42877772	79	-	TSC_hg19_v1_chr12_-_42877811 NM_001144882 NM_001144883	120	-	BC114939 BC114940 AF399844 AF543759 AF543760 AK056499 TSC_hg19_v1_chr12_-_42983549 NM_153026	105813	-	AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AK122881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144882|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144883|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114939|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114940|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF399844|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543759|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543760|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK056499|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_153026|PRICKLE1|144165|prickle homolog 1 (Drosophila)	0.0	0.0	
chr16	47507163	47507303	reg1004283.p2	5.841	+	TSC_hg19_v1_chr16_+_47495241 X84908 CR936710 BC033657 AK309226	-11994	+	TSC_hg19_v1_chr16_+_47495206 NM_000293 NM_001031835 AK298588	-12045	+	TSC_hg19_v1_chr16_-_47495158 AF212247 AK301908	-12076	-	AY196326 AY040220 NM_033226	673387	-	AY040219 NM_033151	758948	-	AF367202 AF411579 NM_032583 NM_145186	761854	-	X84908|PHKB|5257|phosphorylase kinase, beta##CR936710|PHKB|5257|phosphorylase kinase, beta##BC033657|PHKB|5257|phosphorylase kinase, beta##AK309226|PHKB|5257|phosphorylase kinase, beta##NM_000293|PHKB|5257|phosphorylase kinase, beta##NM_001031835|PHKB|5257|phosphorylase kinase, beta##AF212247|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK301908|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AY196326|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040220|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##NM_033226|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040219|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_033151|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11	1.987753	0.0	
chr3	177035752	177035880	reg1005930.p1	5.841	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-120757	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-120865	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-121566	-	BC017825 NM_181361	1218407	+	AF209747 NM_005832	1240736	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	1753749	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	1.021611	0.0	denovo_WM_7:69:0.237	denovo_WM_7:70:0.237	denovo_WM_7:71:0.237	denovo_WM_7:72:0.237
chr6	137037213	137037332	reg1008821.p1	5.841	+	NM_001198616 NM_001198617 NM_003980	-165316	-	TSC_hg19_v1_chr6_-_136871561 AJ242501 AJ242502 CU693064 AB384694 DQ890946 DQ896812 BC025777 AK312789 X73882	-165651	-	AK296483 AK311270 NM_001198614 NM_001198618 TSC_hg19_v1_chr6_-_136847745 AK311114 AK311236 AK316062 NM_001198619 AK311234	-189475	-	TSC_hg19_v1_chr6_-_137113169 AB384845	75958	-	TSC_hg19_v1_chr6_-_137113545 AK310942 D84476	76276	-	BC054503 TSC_hg19_v1_chr6_-_137113611	76338	-	NM_001198616|MAP7|9053|microtubule-associated protein 7##NM_001198617|MAP7|9053|microtubule-associated protein 7##NM_003980|MAP7|9053|microtubule-associated protein 7##AJ242501|MAP7|9053|microtubule-associated protein 7##AJ242502|MAP7|9053|microtubule-associated protein 7##DQ890946|MAP7|9053|microtubule-associated protein 7##DQ896812|MAP7|9053|microtubule-associated protein 7##BC025777|MAP7|9053|microtubule-associated protein 7##AK312789|MAP7|9053|microtubule-associated protein 7##X73882|MAP7|9053|microtubule-associated protein 7##AK296483|MAP7|9053|microtubule-associated protein 7##AK311270|MAP7|9053|microtubule-associated protein 7##NM_001198614|MAP7|9053|microtubule-associated protein 7##NM_001198618|MAP7|9053|microtubule-associated protein 7##AK311114|MAP7|9053|microtubule-associated protein 7##AK311236|MAP7|9053|microtubule-associated protein 7##AK316062|MAP7|9053|microtubule-associated protein 7##NM_001198619|MAP7|9053|microtubule-associated protein 7##AK311234|MAP7|9053|microtubule-associated protein 7##AK310942|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##D84476|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##BC054503|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5	1.994553	0.0	
chr7	33714637	33714798	reg1005967.p1	5.841	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-545636	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-565740	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-612395	-	AK289963 NM_133468 AK096150 BC060868	230425	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	983202	+	DQ287932 NM_015283	1362935	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	0.030068	0.819877	CTCF.p2:-78:0.820
chrX	113318402	113318547	reg1008445.p1	5.841	+	TSC_hg19_v1_chrX_-_112084116 AF286598 NM_133265 AK301573	-1234412	-	AB384557 AY987378 NM_001113490	-1252121	-	BC100785 BC100786 BC100787 AY217350 NM_178175 AK289946	-1395135	-	NM_000868 U49516 BC028688 AK295753 TSC_hg19_v1_chrX_+_113818558 M81778	500098	+	X95302 AK308523 GQ494004 U70981 AK291957 NM_000640 Y08768 AK309444	933700	-	NM_001145346 AK301904	1105501	+	AF286598|AMOT|154796|angiomotin##NM_133265|AMOT|154796|angiomotin##AK301573|AMOT|154796|angiomotin##AY987378|AMOT|154796|angiomotin##NM_001113490|AMOT|154796|angiomotin##BC100785|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##BC100786|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##BC100787|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AY217350|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##NM_178175|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AK289946|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##NM_000868|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##U49516|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##BC028688|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##AK295753|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##M81778|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##X95302|IL13RA2|3598|interleukin 13 receptor, alpha 2##AK308523|IL13RA2|3598|interleukin 13 receptor, alpha 2##GQ494004|IL13RA2|3598|interleukin 13 receptor, alpha 2##U70981|IL13RA2|3598|interleukin 13 receptor, alpha 2##AK291957|IL13RA2|3598|interleukin 13 receptor, alpha 2##NM_000640|IL13RA2|3598|interleukin 13 receptor, alpha 2##Y08768|IL13RA2|3598|interleukin 13 receptor, alpha 2##AK309444|IL13RA2|3598|interleukin 13 receptor, alpha 2##NM_001145346|RBMXL3|139804|RNA binding motif protein, X-linked-like 3##AK301904|RBMXL3|139804|RNA binding motif protein, X-linked-like 3	0.998963	0.851402	CTCF.p2:-12:0.851	denovo_WM_7:13:0.314	denovo_WM_7:14:0.314	denovo_WM_7:15:0.314
chr11	269410	269590	reg1002020.p1	5.840	+	TSC_hg19_v1_chr11_+_236975 AK295944 AK094775 AK222895 AB009398 BC001100 AF083245 AK307447 AF107837 BC001747 BX647314 AB528493 DQ892171 DQ895365 AF086708 BT007307	-32493	+	AK316175 TSC_hg19_v1_chr11_-_236906 AK308681	-32611	-	NM_002817 NM_175932	-32693	+	AF479748 AY154461 NM_138329	9069	+	TSC_hg19_v1_chr11_+_289125 AK074155 NM_025092 BC066641	19642	+	BC150562 BC150563 NM_001025295	30021	-	AK295944|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK094775|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK222895|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AB009398|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BC001100|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF083245|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK307447|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF107837|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BC001747|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BX647314|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##DQ892171|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##DQ895365|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF086708|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##BT007307|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AK316175|SIRT3|23410|sirtuin 3##AK308681|SIRT3|23410|sirtuin 3##NM_002817|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##NM_175932|PSMD13|5719|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13##AF479748|NLRP6|171389|NLR family, pyrin domain containing 6##AY154461|NLRP6|171389|NLR family, pyrin domain containing 6##NM_138329|NLRP6|171389|NLR family, pyrin domain containing 6##AK074155|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##NM_025092|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC066641|ATHL1|80162|ATH1, acid trehalase-like 1 (yeast)##BC150562|IFITM5|387733|interferon induced transmembrane protein 5##BC150563|IFITM5|387733|interferon induced transmembrane protein 5##NM_001025295|IFITM5|387733|interferon induced transmembrane protein 5	0.022442	0.0	
chr16	25050319	25050463	reg1005262.p2	5.840	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-23699	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-23779	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-81499	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	27898	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	72670	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	72806	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	0.995632	0.0	denovo_WM_7:4:0.456	denovo_WM_7:5:0.456
chr6	21594315	21594463	reg1006313.p2	5.840	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-17	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1059666	+	CR749285 NM_001243076	-1190356	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	72270	+	BC015850 NM_000948	703340	-	X54394 X54393 GQ305133 M58594 NM_001163558	708658	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.980937	0.0	denovo_WM_7:-23:0.415	denovo_WM_7:-24:0.415
chr7	127552255	127552379	reg1007779.p1	5.839	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	-259981	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	-260081	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	-260135	+	BC111561 BC111745 AF196976 AJ297858 NM_022143 AK172751 TSC_hg19_v1_chr7_-_127671066 AK314047	118719	-	NM_000230 U43653 TSC_hg19_v1_chr7_+_127881332 AK313553 BC060830 BC069323 BC069452 BC069527	329016	+	CU680694 TSC_hg19_v1_chr7_-_127983862	431537	-	BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC111561|LRRC4|64101|leucine rich repeat containing 4##BC111745|LRRC4|64101|leucine rich repeat containing 4##AF196976|LRRC4|64101|leucine rich repeat containing 4##AJ297858|LRRC4|64101|leucine rich repeat containing 4##NM_022143|LRRC4|64101|leucine rich repeat containing 4##AK172751|LRRC4|64101|leucine rich repeat containing 4##AK314047|LRRC4|64101|leucine rich repeat containing 4##NM_000230|LEP|3952|leptin##U43653|LEP|3952|leptin##AK313553|LEP|3952|leptin##BC060830|LEP|3952|leptin##BC069323|LEP|3952|leptin##BC069452|LEP|3952|leptin##BC069527|LEP|3952|leptin	0.0	0.0	
chrX	129065351	129065478	reg1008204.p2	5.839	+	TSC_hg19_v1_chrX_+_129040144 NM_001166221 NM_006649 AK291918 AK298578 BC009649 BC001149 AK304563 BC014987 AF039694 AB590128 CU679427 DQ892549 DQ895760	-25283	+	TSC_hg19_v1_chrX_-_128977856 AL161962 AK096967 AF151847 AY358558 BC006200 BC012826 BC003128 AK001112 AY952881 NM_016032	-87586	-	AK001524 BC000035 AB209807 TSC_hg19_v1_chrX_-_128977481 NM_001008222	-87989	-	NM_021946 TSC_hg19_v1_chrX_+_129139243 AK074089	73792	+	TSC_hg19_v1_chrX_-_129244438 U32645	179030	-	TSC_hg19_v1_chrX_-_129244474 NM_001421	179064	-	NM_001166221|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##NM_006649|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##AK291918|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##AK298578|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##BC009649|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##BC001149|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##AK304563|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##BC014987|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##DQ892549|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##DQ895760|UTP14A|10813|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)##AL161962|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AK096967|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AF151847|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AY358558|ZDHHC9|51114|zinc finger, DHHC-type containing 9##BC006200|ZDHHC9|51114|zinc finger, DHHC-type containing 9##BC012826|ZDHHC9|51114|zinc finger, DHHC-type containing 9##BC003128|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AK001112|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AY952881|ZDHHC9|51114|zinc finger, DHHC-type containing 9##NM_016032|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AK001524|ZDHHC9|51114|zinc finger, DHHC-type containing 9##BC000035|ZDHHC9|51114|zinc finger, DHHC-type containing 9##AB209807|ZDHHC9|51114|zinc finger, DHHC-type containing 9##NM_001008222|ZDHHC9|51114|zinc finger, DHHC-type containing 9##NM_021946|BCORL1|63035|BCL6 corepressor-like 1##AK074089|BCORL1|63035|BCL6 corepressor-like 1##U32645|ELF4|2000|E74-like factor 4 (ets domain transcription factor)##NM_001421|ELF4|2000|E74-like factor 4 (ets domain transcription factor)	0.97099	0.0	denovo_WM_7:7:0.827
chr18	74210183	74210292	reg1007751.p2	5.838	+	D86975 NM_014643 TSC_hg19_v1_chr18_-_74207166	-3082	-	BC108287 TSC_hg19_v1_chr18_-_74092260	-117987	-	BC105945 BC107486 NM_001037331 BC037871 AK093452 AX748136	-1070615	-	TSC_hg19_v1_chr18_-_74534239 BC032908	324002	-	TSC_hg19_v1_chr18_+_74534512 BX648028	324273	+	AF085243 AF085244 NM_007345	325878	+	D86975|ZNF516|9658|zinc finger protein 516##NM_014643|ZNF516|9658|zinc finger protein 516##BC108287|ZNF516|9658|zinc finger protein 516##BC105945|C18orf62|284274|chromosome 18 open reading frame 62##BC107486|C18orf62|284274|chromosome 18 open reading frame 62##NM_001037331|C18orf62|284274|chromosome 18 open reading frame 62##BC037871|C18orf62|284274|chromosome 18 open reading frame 62##AK093452|C18orf62|284274|chromosome 18 open reading frame 62##BC032908|LOC100131655|100131655|uncharacterized LOC100131655##BX648028|ZNF236|7776|zinc finger protein 236##AF085243|ZNF236|7776|zinc finger protein 236##AF085244|ZNF236|7776|zinc finger protein 236##NM_007345|ZNF236|7776|zinc finger protein 236	0.0	0.0	
chr6	154926686	154926866	reg1006147.p2	5.837	+	D28359 TSC_hg19_v1_chr6_+_154897429	-29346	+	TSC_hg19_v1_chr6_-_154831788 AK055911	-94974	-	TSC_hg19_v1_chr6_-_154831721 AY328891 AY328892 AY328893 NM_173515	-95041	-	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	127749	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	127778	+	TSC_hg19_v1_chr6_+_155054812 AB029039	128049	+	AK055911|CNKSR3|154043|CNKSR family member 3##AY328891|CNKSR3|154043|CNKSR family member 3##AY328892|CNKSR3|154043|CNKSR family member 3##AY328893|CNKSR3|154043|CNKSR family member 3##NM_173515|CNKSR3|154043|CNKSR family member 3##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##AB029039|SCAF8|22828|SR-related CTD-associated factor 8	1.915871	0.0	denovo_WM_7:-66:0.205	denovo_WM_7:-67:0.205	denovo_WM_7:-68:0.205	denovo_WM_7:-94:0.360	denovo_WM_7:-99:0.271
chr1	17758039	17758219	reg1008239.p1	5.836	+	AY443100 AB527380 AY422079 NM_207421	-59414	+	AF229067 AK314839 NM_012387 AB017919 AK290507 AK309637 BC025718 AB527709 CU693030	-123426	+	AB026831 NM_016233 BC109091 BC041592 BC109092	-182530	+	BC142946 TSC_hg19_v1_chr1_-_17764885	6733	-	TSC_hg19_v1_chr1_-_17765031 AB384219 BC042141	6881	-	TSC_hg19_v1_chr1_-_17765069 BC053908 NM_001136204	6932	-	AY443100|PADI6|353238|peptidyl arginine deiminase, type VI##AY422079|PADI6|353238|peptidyl arginine deiminase, type VI##NM_207421|PADI6|353238|peptidyl arginine deiminase, type VI##AF229067|PADI4|23569|peptidyl arginine deiminase, type IV##AK314839|PADI4|23569|peptidyl arginine deiminase, type IV##NM_012387|PADI4|23569|peptidyl arginine deiminase, type IV##AB017919|PADI4|23569|peptidyl arginine deiminase, type IV##AK290507|PADI4|23569|peptidyl arginine deiminase, type IV##AK309637|PADI4|23569|peptidyl arginine deiminase, type IV##BC025718|PADI4|23569|peptidyl arginine deiminase, type IV##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III##BC142946|RCC2|55920|regulator of chromosome condensation 2##BC042141|RCC2|55920|regulator of chromosome condensation 2##BC053908|RCC2|55920|regulator of chromosome condensation 2##NM_001136204|RCC2|55920|regulator of chromosome condensation 2	0.918188	0.0	denovo_WM_7:-97:0.511	denovo_WM_7:-99:0.301
chr6	106205408	106205552	reg1004106.p1	5.836	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-354485	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-354522	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-354634	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	328716	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	328755	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	341324	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.010984	0.0	
chrUn_gl000223	149473	149653	reg1008180.p1	5.836	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.991265	0.02003	
chr15	74268171	74268345	reg1007724.p1	5.835	+	TSC_hg19_v1_chr15_+_74218979 DQ893331	-49217	+	TSC_hg19_v1_chr15_+_74218813 BC015090 L21186	-49443	+	TSC_hg19_v1_chr15_+_74218802 BC068542 AK303982 AK314222	-49457	+	AL109664 AF074953 AL109665 CR542089 DQ064605 AB587381 AK300799 AK222665 AK075244 Y16522 BC034379 BC065249 NM_004809 AF111800 AK302051 TSC_hg19_v1_chr15_-_74284672 AF156557	16345	-	TSC_hg19_v1_chr15_-_74286928 AK091531	18676	-	TSC_hg19_v1_chr15_+_74287096 NM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250 X63131 AB209411 S50913 M73778 AF230401 AF230402 AF230403 AF230404 AF230405 AF230406 AF230407 AF230408 AF230409 AF230410 AF230411 BC000080 BC020994	18792	+	DQ893331|LOXL1|4016|lysyl oxidase-like 1##BC015090|LOXL1|4016|lysyl oxidase-like 1##L21186|LOXL1|4016|lysyl oxidase-like 1##BC068542|LOXL1|4016|lysyl oxidase-like 1##AK303982|LOXL1|4016|lysyl oxidase-like 1##AK314222|LOXL1|4016|lysyl oxidase-like 1##AL109664|STOML1|9399|stomatin (EPB72)-like 1##AF074953|STOML1|9399|stomatin (EPB72)-like 1##AL109665|STOML1|9399|stomatin (EPB72)-like 1##CR542089|STOML1|9399|stomatin (EPB72)-like 1##DQ064605|STOML1|9399|stomatin (EPB72)-like 1##AK300799|STOML1|9399|stomatin (EPB72)-like 1##AK222665|STOML1|9399|stomatin (EPB72)-like 1##AK075244|STOML1|9399|stomatin (EPB72)-like 1##Y16522|STOML1|9399|stomatin (EPB72)-like 1##BC034379|STOML1|9399|stomatin (EPB72)-like 1##BC065249|STOML1|9399|stomatin (EPB72)-like 1##NM_004809|STOML1|9399|stomatin (EPB72)-like 1##AF111800|STOML1|9399|stomatin (EPB72)-like 1##AK302051|STOML1|9399|stomatin (EPB72)-like 1##AF156557|STOML1|9399|stomatin (EPB72)-like 1##AK091531|STOML1|9399|stomatin (EPB72)-like 1##NM_002675|PML|5371|promyelocytic leukemia##NM_033238|PML|5371|promyelocytic leukemia##NM_033239|PML|5371|promyelocytic leukemia##NM_033240|PML|5371|promyelocytic leukemia##NM_033244|PML|5371|promyelocytic leukemia##NM_033246|PML|5371|promyelocytic leukemia##NM_033247|PML|5371|promyelocytic leukemia##NM_033249|PML|5371|promyelocytic leukemia##NM_033250|PML|5371|promyelocytic leukemia##X63131|PML|5371|promyelocytic leukemia##AB209411|PML|5371|promyelocytic leukemia##S50913|PML|5371|promyelocytic leukemia##M73778|PML|5371|promyelocytic leukemia##AF230401|PML|5371|promyelocytic leukemia##AF230402|PML|5371|promyelocytic leukemia##AF230403|PML|5371|promyelocytic leukemia##AF230404|PML|5371|promyelocytic leukemia##AF230405|PML|5371|promyelocytic leukemia##AF230406|PML|5371|promyelocytic leukemia##AF230407|PML|5371|promyelocytic leukemia##AF230408|PML|5371|promyelocytic leukemia##AF230409|PML|5371|promyelocytic leukemia##AF230410|PML|5371|promyelocytic leukemia##AF230411|PML|5371|promyelocytic leukemia##BC000080|PML|5371|promyelocytic leukemia##BC020994|PML|5371|promyelocytic leukemia	0.999132	0.0	denovo_WM_7:-68:0.239	denovo_WM_7:-69:0.239	denovo_WM_7:-70:0.239	denovo_WM_7:-71:0.239
chr6	79960269	79960377	reg1000387.p2	5.835	+	TSC_hg19_v1_chr6_-_79944400 AK315391 AY043282 NM_001201362 NM_001201363 NM_004242 NM_138730	-15898	-	L40357 TSC_hg19_v1_chr6_-_79944391 AF401520 AF274949 BC009529	-15965	-	TSC_hg19_v1_chr6_-_79787972 AK057039 NM_017934	-172266	-	TSC_hg19_v1_chr6_-_80247114 AK299314 BX648161 BC050327 NM_001122769 NM_181714	286806	-	TSC_hg19_v1_chr6_+_80341019 AF340151 NM_031469 BC109043 BC109044 AK311757 BC040489 AK074506 BC052987 BC060799 BC070059 AJ297972	380751	+	NM_001243308	619813	-	AK315391|HMGN3|9324|high mobility group nucleosomal binding domain 3##AY043282|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201362|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201363|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_004242|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_138730|HMGN3|9324|high mobility group nucleosomal binding domain 3##L40357|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF401520|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF274949|HMGN3|9324|high mobility group nucleosomal binding domain 3##BC009529|HMGN3|9324|high mobility group nucleosomal binding domain 3##AK057039|PHIP|55023|pleckstrin homology domain interacting protein##NM_017934|PHIP|55023|pleckstrin homology domain interacting protein##AK299314|LCA5|167691|Leber congenital amaurosis 5##BX648161|LCA5|167691|Leber congenital amaurosis 5##BC050327|LCA5|167691|Leber congenital amaurosis 5##NM_001122769|LCA5|167691|Leber congenital amaurosis 5##NM_181714|LCA5|167691|Leber congenital amaurosis 5##AF340151|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_031469|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109043|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109044|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK311757|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC040489|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK074506|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC052987|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC060799|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC070059|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AJ297972|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_001243308|C6orf7|89758|chromosome 6 open reading frame 7	0.0	0.0	
chr7	17022091	17022226	reg1000121.p1	5.835	+	AY359065 BC058284 NM_176813	-100554	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-177487	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-228702	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	316111	+	TSC_hg19_v1_chr7_+_17382906 BC021696	360748	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	957891	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.0	0.0	
chr9	7976397	7976547	reg1005117.p1	5.835	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	-176757	-	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	-1218433	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	-1218805	+	TSC_hg19_v1_chr9_+_8713275 AY779046	736820	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	757447	-	TSC_hg19_v1_chr9_+_8858136 AK094342	881661	+	AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AY779046|RPL18A|6142|ribosomal protein L18a##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D	0.0	0.0	
chr2	37641646	37641786	reg1008193.p1	5.834	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-69903	+	BC030706 BC012820 AB015982 NM_005813	-97523	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-182870	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	257063	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	257673	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	510716	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.0	0.0	
chr6	130028735	130028857	reg1006467.p1	5.834	+	NM_000426 NM_001079823 Z26653	-824483	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1187140	-	AK124031 NM_001164687	-1789038	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	2530	-	NM_001010876	153619	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	310929	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.981855	0.0	denovo_WM_7:7:0.327	denovo_WM_7:8:0.327	denovo_WM_7:9:0.327
chr6	16305451	16305631	reg1002749.p1	5.834	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-66690	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-162231	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-176104	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	456156	-	NM_001190766	796947	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	976313	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.999073	0.0	denovo_WM_7:-28:0.774
chr19	40649894	40650074	reg1000310.p2	5.833	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-53172	-	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-87858	-	NM_178544 AK122968 AK292528 BC045649	-146999	+	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	47662	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	74304	-	AK023327 AK301833 NM_024877	82595	-	AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2	0.024698	0.0	
chr7	20879769	20879901	reg1009979.p1	5.833	+	TSC_hg19_v1_chr7_-_20826527 AK056857 AK307969 AY167047 BC038669 AK290465 NM_182700 NM_198956	-53301	-	TSC_hg19_v1_chr7_-_20826429 AK299947	-53407	-	TSC_hg19_v1_chr7_-_20825382 AB464710	-54453	-	TSC_hg19_v1_chr7_+_21467717 AK289728 AK296749 NM_003112 X68561 BC109300 BC109301	587984	+	AB591008 TSC_hg19_v1_chr7_+_21468356	588489	+	AJ320497 NM_003777	702997	+	AK056857|SP8|221833|Sp8 transcription factor##AK307969|SP8|221833|Sp8 transcription factor##AY167047|SP8|221833|Sp8 transcription factor##BC038669|SP8|221833|Sp8 transcription factor##AK290465|SP8|221833|Sp8 transcription factor##NM_182700|SP8|221833|Sp8 transcription factor##NM_198956|SP8|221833|Sp8 transcription factor##AK299947|SP8|221833|Sp8 transcription factor##AK289728|SP4|6671|Sp4 transcription factor##AK296749|SP4|6671|Sp4 transcription factor##NM_003112|SP4|6671|Sp4 transcription factor##X68561|SP4|6671|Sp4 transcription factor##BC109300|SP4|6671|Sp4 transcription factor##BC109301|SP4|6671|Sp4 transcription factor##AJ320497|DNAH11|8701|dynein, axonemal, heavy chain 11##NM_003777|DNAH11|8701|dynein, axonemal, heavy chain 11	0.991021	0.0	denovo_WM_7:57:0.618
chr13	78293358	78293495	reg1008129.p2	5.832	+	AK294201 NM_001040153	-20411	+	TSC_hg19_v1_chr13_+_78271822 NM_001242868	-21522	+	NM_001160706 NM_003843 NM_144777 BC020726 AF045941 AK025320 AK222720 AK301659	-183575	+	NM_001242869 NM_001242870 NM_001242871 NM_144595 AL834203 AK289600 BC045177 AK289714 AK295423	21980	+	TSC_hg19_v1_chr13_-_78492936 L06623 X99250 S44866 BC014472 AB209198 AK290699 NM_001122659 NM_003991	199526	-	AF114163 AF114164 TSC_hg19_v1_chr13_-_78493569	200125	-	AK294201|SLAIN1|122060|SLAIN motif family, member 1##NM_001040153|SLAIN1|122060|SLAIN motif family, member 1##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1##NM_001160706|SCEL|8796|sciellin##NM_003843|SCEL|8796|sciellin##NM_144777|SCEL|8796|sciellin##BC020726|SCEL|8796|sciellin##AF045941|SCEL|8796|sciellin##AK025320|SCEL|8796|sciellin##AK222720|SCEL|8796|sciellin##AK301659|SCEL|8796|sciellin##NM_001242869|SLAIN1|122060|SLAIN motif family, member 1##NM_001242870|SLAIN1|122060|SLAIN motif family, member 1##NM_001242871|SLAIN1|122060|SLAIN motif family, member 1##NM_144595|SLAIN1|122060|SLAIN motif family, member 1##AL834203|SLAIN1|122060|SLAIN motif family, member 1##AK289600|SLAIN1|122060|SLAIN motif family, member 1##BC045177|SLAIN1|122060|SLAIN motif family, member 1##AK289714|SLAIN1|122060|SLAIN motif family, member 1##AK295423|SLAIN1|122060|SLAIN motif family, member 1##L06623|EDNRB|1910|endothelin receptor type B##X99250|EDNRB|1910|endothelin receptor type B##S44866|EDNRB|1910|endothelin receptor type B##BC014472|EDNRB|1910|endothelin receptor type B##AB209198|EDNRB|1910|endothelin receptor type B##AK290699|EDNRB|1910|endothelin receptor type B##NM_001122659|EDNRB|1910|endothelin receptor type B##NM_003991|EDNRB|1910|endothelin receptor type B	0.99941	0.0	denovo_WM_7:-25:0.739
chr12	85819119	85819299	reg1008397.p3	5.831	+	U31986 TSC_hg19_v1_chr12_+_85673999 BC010923 NM_006982	-145250	+	AK022365 NM_001079910 BC005399 BC093088 AK307799	-389086	+	AK126325 NM_001100917	-389155	-	DQ890787 DQ893943 AF056209 TSC_hg19_v1_chr12_-_86230094 BC031589	410836	-	AK022089 TSC_hg19_v1_chr12_-_86230188 NM_005447	411028	-	AK312066 NM_006183 BC010918 AF157682 U91618 AB587429 CR541936 CU679849	448917	+	U31986|ALX1|8092|ALX homeobox 1##BC010923|ALX1|8092|ALX homeobox 1##NM_006982|ALX1|8092|ALX homeobox 1##AK022365|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##NM_001079910|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##BC005399|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##BC093088|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##AK307799|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##AK126325|TSPAN19|144448|tetraspanin 19##NM_001100917|TSPAN19|144448|tetraspanin 19##DQ890787|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##DQ893943|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AF056209|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##BC031589|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AK022089|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##NM_005447|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AK312066|NTS|4922|neurotensin##NM_006183|NTS|4922|neurotensin##BC010918|NTS|4922|neurotensin##AF157682|NTS|4922|neurotensin##U91618|NTS|4922|neurotensin##CR541936|NTS|4922|neurotensin	1.971418	0.0	denovo_WM_7:0:0.782	denovo_WM_7:15:0.793
chr2	111984670	111984813	reg1006439.p1	5.831	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-106254	+	AK300513 NM_001142807 BC022268	-494562	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-548919	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	656885	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	657020	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	671444	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.0	0.0	
chr6	83216886	83217047	reg1008434.p1	5.831	+	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	-142989	+	TSC_hg19_v1_chr6_+_83073565 BC037161 AK074786	-143433	+	AK291170 NM_006670	-144044	+	TSC_hg19_v1_chr6_-_83775541 BC101512 BC101538 BC143617 BC036049 AB126062 NM_198920 BC053645 AK298205 BC057845	558559	-	TSC_hg19_v1_chr6_+_83777389 BX648667 NM_001199942 NM_015018 AK094766	560431	+	AF102265 AB032081 AF180371 TSC_hg19_v1_chr6_-_83902977 AK314512 AK225363 AK001365 AK023432 BC001258 NM_001199918 NM_001199919 NM_015599	686006	-	AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein##BC037161|TPBG|7162|trophoblast glycoprotein##AK074786|TPBG|7162|trophoblast glycoprotein##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein##BC101512|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC101538|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC143617|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC036049|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AB126062|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##NM_198920|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC053645|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK298205|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC057845|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BX648667|DOPEY1|23033|dopey family member 1##NM_001199942|DOPEY1|23033|dopey family member 1##NM_015018|DOPEY1|23033|dopey family member 1##AK094766|DOPEY1|23033|dopey family member 1##AF102265|PGM3|5238|phosphoglucomutase 3##AB032081|PGM3|5238|phosphoglucomutase 3##AF180371|PGM3|5238|phosphoglucomutase 3##AK314512|PGM3|5238|phosphoglucomutase 3##AK225363|PGM3|5238|phosphoglucomutase 3##AK001365|PGM3|5238|phosphoglucomutase 3##AK023432|PGM3|5238|phosphoglucomutase 3##BC001258|PGM3|5238|phosphoglucomutase 3##NM_001199918|PGM3|5238|phosphoglucomutase 3##NM_001199919|PGM3|5238|phosphoglucomutase 3##NM_015599|PGM3|5238|phosphoglucomutase 3	0.970474	0.0	denovo_WM_7:-41:0.970
chr8	57594927	57595066	reg1008363.p1	5.831	+	BC107706 TSC_hg19_v1_chr8_-_57359201 AK309758 AK314908 NM_001135690	-235767	-	CR541808 CR541828 DQ890865 DQ890871 DQ894027 BC032505 NM_006211	-236445	-	TSC_hg19_v1_chr8_+_57358383 AK091563 AX747062	-236624	+	AY032885 TSC_hg19_v1_chr8_-_57906227	311260	-	TSC_hg19_v1_chr8_-_57906381 BC017797	311382	-	BC067814 TSC_hg19_v1_chr8_-_57906402	311406	-	BC107706|PENK|5179|proenkephalin##AK314908|PENK|5179|proenkephalin##NM_001135690|PENK|5179|proenkephalin##CR541808|PENK|5179|proenkephalin##CR541828|PENK|5179|proenkephalin##DQ890865|PENK|5179|proenkephalin##DQ890871|PENK|5179|proenkephalin##DQ894027|PENK|5179|proenkephalin##BC032505|PENK|5179|proenkephalin##NM_006211|PENK|5179|proenkephalin##AY032885|IMPAD1|54928|inositol monophosphatase domain containing 1##BC017797|IMPAD1|54928|inositol monophosphatase domain containing 1##BC067814|IMPAD1|54928|inositol monophosphatase domain containing 1	0.461742	0.0	denovo_WM_7:-21:0.285
chr10	98679866	98680004	reg1007376.p1	5.830	+	TSC_hg19_v1_chr10_+_98592758 NM_032440 AL834245 AB058698	-87207	+	TSC_hg19_v1_chr10_-_98592186 AB593180	-87735	-	TSC_hg19_v1_chr10_+_98592020 NM_001170765 NM_001170766 AL832106 AK308356 BC053359	-87882	+	AK126886 BC024315 NM_015652 CU692918	61132	+	AY029183 AB383997 TSC_hg19_v1_chr10_-_98945570	265539	-	TSC_hg19_v1_chr10_-_98945606 BC146851	265660	-	NM_032440|LCOR|84458|ligand dependent nuclear receptor corepressor##AL834245|LCOR|84458|ligand dependent nuclear receptor corepressor##AB058698|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170765|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170766|LCOR|84458|ligand dependent nuclear receptor corepressor##AL832106|LCOR|84458|ligand dependent nuclear receptor corepressor##BC053359|LCOR|84458|ligand dependent nuclear receptor corepressor##AK126886|C10orf12|26148|chromosome 10 open reading frame 12##BC024315|C10orf12|26148|chromosome 10 open reading frame 12##NM_015652|C10orf12|26148|chromosome 10 open reading frame 12##AY029183|SLIT1|6585|slit homolog 1 (Drosophila)##BC146851|SLIT1|6585|slit homolog 1 (Drosophila)	0.902648	0.0	denovo_WM_7:-1:0.878
chr12	110888211	110888391	reg1003452.p1	5.830	+	TSC_hg19_v1_chr12_-_110888163 AK311789	-132	-	TSC_hg19_v1_chr12_-_110888152 NM_005719	-147	-	TSC_hg19_v1_chr12_-_110888134 AK297309	-159	-	AM992619 AM992620 AY364262 CU678955 CU689082 AB528074 AM393009 AM393821 TSC_hg19_v1_chr12_-_110906038 AF117229	17729	-	TSC_hg19_v1_chr12_-_110906063 AK223209 AK314946 BC008416 BC031024 AY359078 BX537973 NM_001164373 NM_016301	17771	-	TSC_hg19_v1_chr12_+_110906228 AK296280 AK297684 NM_013300 AK225731 U79274 BC020967	18008	+	AK311789|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##NM_005719|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AK297309|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AM992619|GPN3|51184|GPN-loop GTPase 3##AM992620|GPN3|51184|GPN-loop GTPase 3##AY364262|GPN3|51184|GPN-loop GTPase 3##AM393009|GPN3|51184|GPN-loop GTPase 3##AM393821|GPN3|51184|GPN-loop GTPase 3##AF117229|GPN3|51184|GPN-loop GTPase 3##AK223209|GPN3|51184|GPN-loop GTPase 3##AK314946|GPN3|51184|GPN-loop GTPase 3##BC008416|GPN3|51184|GPN-loop GTPase 3##BC031024|GPN3|51184|GPN-loop GTPase 3##AY359078|GPN3|51184|GPN-loop GTPase 3##BX537973|GPN3|51184|GPN-loop GTPase 3##NM_001164373|GPN3|51184|GPN-loop GTPase 3##NM_016301|GPN3|51184|GPN-loop GTPase 3##AK296280|C12orf24|29902|chromosome 12 open reading frame 24##AK297684|C12orf24|29902|chromosome 12 open reading frame 24##NM_013300|C12orf24|29902|chromosome 12 open reading frame 24##AK225731|C12orf24|29902|chromosome 12 open reading frame 24##U79274|C12orf24|29902|chromosome 12 open reading frame 24##BC020967|C12orf24|29902|chromosome 12 open reading frame 24	0.376778	0.0	denovo_WM_7:48:0.231
chr16	11405194	11405374	reg1007346.p1	5.830	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-30142	-	BC042671 X07862 AK130957 AK131573 AK292447 AK307320 AK311798 BC005303 BC066338 NM_002762	-34964	-	NM_021247	-37833	-	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	34010	+	TSC_hg19_v1_chr16_+_11439315 BC013040	34034	+	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	274903	-	BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC042671|PRM2|5620|protamine 2##X07862|PRM2|5620|protamine 2##AK130957|PRM2|5620|protamine 2##AK131573|PRM2|5620|protamine 2##AK292447|PRM2|5620|protamine 2##AK311798|PRM2|5620|protamine 2##BC005303|PRM2|5620|protamine 2##BC066338|PRM2|5620|protamine 2##NM_002762|PRM2|5620|protamine 2##NM_021247|PRM3|58531|protamine 3##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor	0.0	0.0	
chr20	31957253	31957344	reg1005277.p1	5.830	+	NM_033197 AK290243 AF364078 AK310964 TSC_hg19_v1_chr20_+_31871019 AK313176 BC008429 AY358595	-86314	+	AF417256 AF417257 BC012549 NM_001243193 NM_016583 NM_130852 AK292778 AY359020 AB024937 AF158745 AF439448 AF172993	-133486	+	BC041904 NM_001042439 NM_178466 BC066354	-152161	+	BC001215 TSC_hg19_v1_chr20_-_31989326 AF152097 BC050706 AK027449 AF161516 AK023992 AK222745 AK292075 AK295342 AK309906 AK314532 AY462283 AY462284	32016	-	TSC_hg19_v1_chr20_-_31989330 NM_016082 NM_016408	32041	-	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	74263	-	NM_033197|BPIFB1|92747|BPI fold containing family B, member 1##AK290243|BPIFB1|92747|BPI fold containing family B, member 1##AF364078|BPIFB1|92747|BPI fold containing family B, member 1##AK310964|BPIFB1|92747|BPI fold containing family B, member 1##AK313176|BPIFB1|92747|BPI fold containing family B, member 1##BC008429|BPIFB1|92747|BPI fold containing family B, member 1##AY358595|BPIFB1|92747|BPI fold containing family B, member 1##AF417256|BPIFA1|51297|BPI fold containing family A, member 1##AF417257|BPIFA1|51297|BPI fold containing family A, member 1##BC012549|BPIFA1|51297|BPI fold containing family A, member 1##NM_001243193|BPIFA1|51297|BPI fold containing family A, member 1##NM_016583|BPIFA1|51297|BPI fold containing family A, member 1##NM_130852|BPIFA1|51297|BPI fold containing family A, member 1##AK292778|BPIFA1|51297|BPI fold containing family A, member 1##AY359020|BPIFA1|51297|BPI fold containing family A, member 1##AB024937|BPIFA1|51297|BPI fold containing family A, member 1##AF158745|BPIFA1|51297|BPI fold containing family A, member 1##AF439448|BPIFA1|51297|BPI fold containing family A, member 1##AF172993|BPIFA1|51297|BPI fold containing family A, member 1##BC041904|BPIFA3|128861|BPI fold containing family A, member 3##NM_001042439|BPIFA3|128861|BPI fold containing family A, member 3##NM_178466|BPIFA3|128861|BPI fold containing family A, member 3##BC066354|BPIFA3|128861|BPI fold containing family A, member 3##BC001215|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF152097|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC050706|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK027449|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF161516|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK023992|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK222745|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK292075|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK295342|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK309906|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK314532|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462283|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462284|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016082|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016408|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)	0.964555	0.0	denovo_WM_7:4:0.871
chr5	101559643	101559788	reg1009522.p1	5.830	+	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-1320787	-	AF529367 TSC_hg19_v1_chr5_+_99871306	-1688445	+	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	-1688642	+	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	72393	-	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	274918	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	641815	+	L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AF529367|FAM174A|345757|family with sequence similarity 174, member A##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase	2.013767	0.889434	CTCF.p2:5:0.889	denovo_WM_7:64:0.931	denovo_WM_7:79:0.656	denovo_WM_7:80:0.207
chr19	8390080	8390192	reg1006887.p1	5.829	+	TSC_hg19_v1_chr19_+_8386383 AB055779 AK293636 AK301638 AK311925 BC070217 NM_001031 BC070218 BC000354 BC018810 L05091 U58682 BC021239 DQ891357 DQ894538 CR457055	-3742	+	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	-3850	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	-3879	-	BC035849 TSC_hg19_v1_chr19_-_8408147 AB284126 AK097023 AK128815 BC066124 BC066775 NM_198471	17999	-	NM_001039667 NM_139314 TSC_hg19_v1_chr19_+_8429039 AB056477 AF202636 AK222489 AK303269 AK222524 AY358275 AF153606 BC023647 AF169312 CU692818	38971	+	TSC_hg19_v1_chr19_+_8455237 NM_004218 AK310573	65083	+	AK293636|RPS28|6234|ribosomal protein S28##AK301638|RPS28|6234|ribosomal protein S28##AK311925|RPS28|6234|ribosomal protein S28##BC070217|RPS28|6234|ribosomal protein S28##NM_001031|RPS28|6234|ribosomal protein S28##BC070218|RPS28|6234|ribosomal protein S28##BC000354|RPS28|6234|ribosomal protein S28##BC018810|RPS28|6234|ribosomal protein S28##L05091|RPS28|6234|ribosomal protein S28##U58682|RPS28|6234|ribosomal protein S28##BC021239|RPS28|6234|ribosomal protein S28##DQ891357|RPS28|6234|ribosomal protein S28##DQ894538|RPS28|6234|ribosomal protein S28##CR457055|RPS28|6234|ribosomal protein S28##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC035849|KANK3|256949|KN motif and ankyrin repeat domains 3##AB284126|KANK3|256949|KN motif and ankyrin repeat domains 3##AK128815|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066124|KANK3|256949|KN motif and ankyrin repeat domains 3##BC066775|KANK3|256949|KN motif and ankyrin repeat domains 3##NM_198471|KANK3|256949|KN motif and ankyrin repeat domains 3##NM_001039667|ANGPTL4|51129|angiopoietin-like 4##NM_139314|ANGPTL4|51129|angiopoietin-like 4##AB056477|ANGPTL4|51129|angiopoietin-like 4##AF202636|ANGPTL4|51129|angiopoietin-like 4##AK222489|ANGPTL4|51129|angiopoietin-like 4##AK303269|ANGPTL4|51129|angiopoietin-like 4##AK222524|ANGPTL4|51129|angiopoietin-like 4##AY358275|ANGPTL4|51129|angiopoietin-like 4##AF153606|ANGPTL4|51129|angiopoietin-like 4##BC023647|ANGPTL4|51129|angiopoietin-like 4##AF169312|ANGPTL4|51129|angiopoietin-like 4##NM_004218|RAB11B|9230|RAB11B, member RAS oncogene family	1.100229	0.0	
chr6	57298253	57298380	reg1007339.p1	5.829	+	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-115901	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-211245	-	AB034244 AK313796 NM_183227	-212086	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	989363	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	5697685	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	6731548	-	BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AB034244|RAB23|51715|RAB23, member RAS oncogene family##AK313796|RAB23|51715|RAB23, member RAS oncogene family##NM_183227|RAB23|51715|RAB23, member RAS oncogene family##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	0.0	0.0	
chrX	148203253	148203391	reg1007144.p1	5.829	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	-402710	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	-621134	+	BC034320 NM_152578 AY211917 AK098602	-1140467	+	CU675281 AF050145 BC006170 TSC_hg19_v1_chrX_-_148586837 BX647357 L40586 M58342 AK294541 NM_000202 NM_001166550 NM_006123	383452	-	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	419108	-	NM_001171907 NM_001171908 NM_178124 U66049 AK294153 AY074889 AK291899 BC065539 BC104930 BC104932 BC143660 BC143661 BC143662	419272	+	AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2##NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##AF050145|IDS|3423|iduronate 2-sulfatase##BC006170|IDS|3423|iduronate 2-sulfatase##BX647357|IDS|3423|iduronate 2-sulfatase##L40586|IDS|3423|iduronate 2-sulfatase##M58342|IDS|3423|iduronate 2-sulfatase##AK294541|IDS|3423|iduronate 2-sulfatase##NM_000202|IDS|3423|iduronate 2-sulfatase##NM_001166550|IDS|3423|iduronate 2-sulfatase##NM_006123|IDS|3423|iduronate 2-sulfatase##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434##NM_001171907|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171908|CXorf40A|91966|chromosome X open reading frame 40A##NM_178124|CXorf40A|91966|chromosome X open reading frame 40A##U66049|CXorf40A|91966|chromosome X open reading frame 40A##AK294153|CXorf40A|91966|chromosome X open reading frame 40A##AY074889|CXorf40A|91966|chromosome X open reading frame 40A##AK291899|CXorf40A|91966|chromosome X open reading frame 40A##BC065539|CXorf40A|91966|chromosome X open reading frame 40A##BC104930|CXorf40A|91966|chromosome X open reading frame 40A##BC104932|CXorf40A|91966|chromosome X open reading frame 40A##BC143660|CXorf40A|91966|chromosome X open reading frame 40A##BC143661|CXorf40A|91966|chromosome X open reading frame 40A##BC143662|CXorf40A|91966|chromosome X open reading frame 40A	0.992559	0.0	denovo_WM_7:17:0.959
chr13	41386393	41386524	reg1009439.p1	5.827	+	AF177333 TSC_hg19_v1_chr13_+_41363756	-22692	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-22774	+	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	-22869	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	109407	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	169738	-	AK304289 BC010575 BC030507 NM_001145353	169930	-	AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.494536	0.0	denovo_WM_7:5:0.218
chr18	2637424	2637570	reg1000640.p3	5.827	+	TSC_hg19_v1_chr18_+_2571589 AF017790	-65902	+	NM_006101 BC005239 TSC_hg19_v1_chr18_+_2571579 AK289396 AK313184 BC035617 BC010171	-65952	+	AK290001 BC111020 NM_022840	-66042	-	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	18417	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	209534	+	AB026706 TSC_hg19_v1_chr18_+_2907037	269504	+	AF017790|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##NM_006101|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC005239|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK289396|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK313184|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC035617|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC010171|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK290001|METTL4|64863|methyltransferase like 4##BC111020|METTL4|64863|methyltransferase like 4##NM_022840|METTL4|64863|methyltransferase like 4##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##AB026706|EMILIN2|84034|elastin microfibril interfacer 2	0.998703	0.184197	
chr19	19601329	19601451	reg1007089.p2	5.827	+	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	-104684	+	TSC_hg19_v1_chr19_+_19431662 AB385396	-169726	+	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	-169756	+	AB464723 DQ891603 DQ894797 AF329483 AK058166 AK313767 BC014611 NM_032037 AF348077	24975	-	TSC_hg19_v1_chr19_+_19626536 AF261134	25175	+	NM_015965 TSC_hg19_v1_chr19_+_19627033 BC009189 AK298891 AK293859 AK293965 BC000589 AF286697	25646	+	NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A##NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##DQ891603|TSSK6|83983|testis-specific serine kinase 6##DQ894797|TSSK6|83983|testis-specific serine kinase 6##AF329483|TSSK6|83983|testis-specific serine kinase 6##AK058166|TSSK6|83983|testis-specific serine kinase 6##AK313767|TSSK6|83983|testis-specific serine kinase 6##BC014611|TSSK6|83983|testis-specific serine kinase 6##NM_032037|TSSK6|83983|testis-specific serine kinase 6##AF348077|TSSK6|83983|testis-specific serine kinase 6##AF261134|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##NM_015965|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC009189|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AK293859|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC000589|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AF286697|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	0.0	0.963374	CTCF.p2:-16:0.963
chr8	80605654	80605766	reg1002458.p2	5.827	+	AK292737 TSC_hg19_v1_chr8_+_80523376 BC006302 S82024 AB528346 BT020034 CR456833 DQ892719 DQ895968 CU675343	-82307	+	TSC_hg19_v1_chr8_+_80523354 AK297594 AK308557 AK297485	-82351	+	AK299500 TSC_hg19_v1_chr8_+_80523339	-82371	+	AF311883 BT020065 AB489173 CU674904 AF151522 AF176422 AJ272214 BC001873 AK074641 AK313271 AF232239 TSC_hg19_v1_chr8_-_80680006 AK092437 AK226041 AF254637 NM_001040708 NM_012258	74287	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	336792	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	387319	-	AK292737|STMN2|11075|stathmin-like 2##BC006302|STMN2|11075|stathmin-like 2##S82024|STMN2|11075|stathmin-like 2##BT020034|STMN2|11075|stathmin-like 2##CR456833|STMN2|11075|stathmin-like 2##DQ892719|STMN2|11075|stathmin-like 2##DQ895968|STMN2|11075|stathmin-like 2##AK297594|STMN2|11075|stathmin-like 2##AK308557|STMN2|11075|stathmin-like 2##AK297485|STMN2|11075|stathmin-like 2##AK299500|STMN2|11075|stathmin-like 2##AF311883|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT020065|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF151522|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF176422|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AJ272214|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BC001873|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK074641|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK313271|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF232239|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK092437|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK226041|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF254637|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_001040708|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_012258|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52	0.0	0.0	
chr11	60213968	60214148	reg1000907.p1	5.826	+	BC029884 NM_023945 AF237907 AF321127 AB013103	-16980	+	NM_001079692 NM_032597	-50572	+	TSC_hg19_v1_chr11_+_60146063 BC020673 AF237916 AF201951 AF350501	-67999	+	NM_021950 NM_152866 AK225630 AK292168 AK300025 AK310118 BC002807 X07203 X12530	9255	+	AK000224 AK309275 NM_001164470 NM_017716 BC029793	46198	+	AY324188 AY324189 AY324190 NM_001012417 NM_001100909 BC140799 BC171746	68890	+	BC029884|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##NM_023945|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##AF237907|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##AF321127|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##AB013103|MS4A5|64232|membrane-spanning 4-domains, subfamily A, member 5##NM_001079692|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14##NM_032597|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14##BC020673|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF237916|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF201951|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF350501|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_021950|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##NM_152866|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK225630|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK292168|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK300025|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK310118|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##BC002807|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X07203|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X12530|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK000224|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_001164470|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_017716|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##BC029793|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##AY324188|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324189|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324190|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001012417|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001100909|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC140799|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC171746|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13	0.0	0.0	
chr14	102554177	102554357	reg1007051.p2	5.826	+	TSC_hg19_v1_chr14_-_102553513 NM_005348	-761	-	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	-903	-	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	-123306	+	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	51772	-	TSC_hg19_v1_chr14_+_102606250 NM_001242414 NM_001242415 NM_001242416 NM_001242417 NM_001242418 NM_144574 NM_181291 NM_181308 BC030654 AK090580 AK225852 BC028387 AK090978 AX746714 AK297727 AL832242 AL832500 CU688486 DQ891530 DQ894719 EU831767 EU831845 AF327354 BX248274	51943	+	TSC_hg19_v1_chr14_-_102771492 AK094747 BC053536 BC026069 AK302349 AK312778 AB022694 NM_014226	217232	-	NM_005348|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001242414|WDR20|91833|WD repeat domain 20##NM_001242415|WDR20|91833|WD repeat domain 20##NM_001242416|WDR20|91833|WD repeat domain 20##NM_001242417|WDR20|91833|WD repeat domain 20##NM_001242418|WDR20|91833|WD repeat domain 20##NM_144574|WDR20|91833|WD repeat domain 20##NM_181291|WDR20|91833|WD repeat domain 20##NM_181308|WDR20|91833|WD repeat domain 20##BC030654|WDR20|91833|WD repeat domain 20##AK090580|WDR20|91833|WD repeat domain 20##AK225852|WDR20|91833|WD repeat domain 20##BC028387|WDR20|91833|WD repeat domain 20##AK090978|WDR20|91833|WD repeat domain 20##AK297727|WDR20|91833|WD repeat domain 20##AL832242|WDR20|91833|WD repeat domain 20##AL832500|WDR20|91833|WD repeat domain 20##DQ891530|WDR20|91833|WD repeat domain 20##DQ894719|WDR20|91833|WD repeat domain 20##EU831767|WDR20|91833|WD repeat domain 20##EU831845|WDR20|91833|WD repeat domain 20##AF327354|WDR20|91833|WD repeat domain 20##BX248274|WDR20|91833|WD repeat domain 20##AK094747|MOK|5891|MOK protein kinase##BC053536|MOK|5891|MOK protein kinase##BC026069|MOK|5891|MOK protein kinase##AK302349|MOK|5891|MOK protein kinase##AK312778|MOK|5891|MOK protein kinase##AB022694|MOK|5891|MOK protein kinase##NM_014226|MOK|5891|MOK protein kinase	1.987595	0.0	denovo_WM_7:9:0.245	denovo_WM_7:28:0.808
chr14	76005880	76006060	reg1001809.p2	5.826	+	TSC_hg19_v1_chr14_+_75988840 D42106	-17118	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	-17180	+	BC051303 NM_001135049	-107134	+	NM_017791 AY260572 AY260577 BC019087 AK000378	38995	+	AK297002 NM_001195283	65834	+	AF134159 TSC_hg19_v1_chr14_-_76127220 AK311764 AL136658 AF136971 AF161406 BC002444	121226	-	D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK297002|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##NM_001195283|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AF134159|C14orf1|11161|chromosome 14 open reading frame 1##AK311764|C14orf1|11161|chromosome 14 open reading frame 1##AL136658|C14orf1|11161|chromosome 14 open reading frame 1##AF136971|C14orf1|11161|chromosome 14 open reading frame 1##AF161406|C14orf1|11161|chromosome 14 open reading frame 1##BC002444|C14orf1|11161|chromosome 14 open reading frame 1	0.0	0.0	
chr17	4316529	4316709	reg1008399.p2	5.826	+	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	-46711	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	-46908	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-149468	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	20623	+	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	85617	+	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	142055	-	AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a	0.0	0.999609	CTCF.p2:55:1.000
chr19	1605483	1605595	reg1006525.p1	5.826	+	TSC_hg19_v1_chr19_-_1605464 NM_006830	-66	-	AK312053 TSC_hg19_v1_chr19_-_1605462	-77	-	TSC_hg19_v1_chr19_-_1605429 BC000462 BC003594 D55636	-108	-	AB385055 BC110579 BC110580 M31523 NM_001136139	44726	-	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	46800	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	148213	+	NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##AK312053|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##BC000462|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##BC003594|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##D55636|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001080488|ONECUT3|390874|one cut homeobox 3	0.053343	0.0	
chr20	5990677	5990857	reg1007686.p2	5.826	+	NM_001127458 AK310368	-2868	+	TSC_hg19_v1_chr20_+_5986970 AL832419	-3798	+	TSC_hg19_v1_chr20_+_5986768 BC069010 AB463464 DQ386730	-3941	+	TSC_hg19_v1_chr20_-_6034626 AK290123 AK172833 BC027720 NM_152611	43889	-	TSC_hg19_v1_chr20_-_6103678 AK314394 BC040545 AF443278	112907	-	BC035882 TSC_hg19_v1_chr20_-_6103891	113110	-	NM_001127458|CRLS1|54675|cardiolipin synthase 1##AK310368|CRLS1|54675|cardiolipin synthase 1##AL832419|CRLS1|54675|cardiolipin synthase 1##BC069010|CRLS1|54675|cardiolipin synthase 1##DQ386730|CRLS1|54675|cardiolipin synthase 1##AK290123|LRRN4|164312|leucine rich repeat neuronal 4##AK172833|LRRN4|164312|leucine rich repeat neuronal 4##BC027720|LRRN4|164312|leucine rich repeat neuronal 4##NM_152611|LRRN4|164312|leucine rich repeat neuronal 4##AK314394|FERMT1|55612|fermitin family member 1##BC040545|FERMT1|55612|fermitin family member 1##AF443278|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1	0.991802	0.0	denovo_WM_7:-33:0.323	denovo_WM_7:-34:0.323	denovo_WM_7:-35:0.323
chr3	94124278	94124430	reg1008099.p1	5.826	+	AK122674 NM_001195643	-342288	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-342510	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-342610	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	2409076	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	3034117	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	3359246	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.0	0.0	
chr7	72941749	72941929	reg1006806.p2	5.826	+	TSC_hg19_v1_chr7_-_72936624 AB032253 AF072810 NM_032408	-5224	-	TSC_hg19_v1_chr7_-_72936538 AF084479	-5290	-	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	-5356	-	TSC_hg19_v1_chr7_-_72971945 CU679393 DQ890556 DQ893716 BC001967 AJ223979 X89985 AK290091 BC009548	30094	-	TSC_hg19_v1_chr7_-_72972023 BC000956 NM_001197244 NM_001707	30203	-	TSC_hg19_v1_chr7_-_72992678 AK302265	50880	-	AB032253|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF072810|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##NM_032408|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##DQ890556|BCL7B|9275|B-cell CLL/lymphoma 7B##DQ893716|BCL7B|9275|B-cell CLL/lymphoma 7B##BC001967|BCL7B|9275|B-cell CLL/lymphoma 7B##AJ223979|BCL7B|9275|B-cell CLL/lymphoma 7B##X89985|BCL7B|9275|B-cell CLL/lymphoma 7B##AK290091|BCL7B|9275|B-cell CLL/lymphoma 7B##BC009548|BCL7B|9275|B-cell CLL/lymphoma 7B##BC000956|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001197244|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001707|BCL7B|9275|B-cell CLL/lymphoma 7B##AK302265|TBL2|26608|transducin (beta)-like 2	1.647499	0.0	denovo_WM_7:21:0.517	denovo_WM_7:38:0.218	denovo_WM_7:39:0.253
chr20	2435491	2435632	reg1009413.p1	5.824	+	AF540969 AF540970 NM_198994	-74008	+	NM_003245 AK298637 AK299447 AK308249 AK290324 AK291351 AK315236 L10386 BC109075 BC109076	-158912	+	TSC_hg19_v1_chr20_-_2083527 BC034792	-352035	-	TSC_hg19_v1_chr20_-_2451416 X17568 X17567 BC080516	15829	-	TSC_hg19_v1_chr20_-_2451436 AK301034 AK312620 AK301206 AK307093 AK307266	15871	-	TSC_hg19_v1_chr20_-_2451439 BC003530 J04564 NM_003091 NM_198216	15912	-	AF540969|TGM6|343641|transglutaminase 6##AF540970|TGM6|343641|transglutaminase 6##NM_198994|TGM6|343641|transglutaminase 6##NM_003245|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK298637|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK299447|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK308249|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK290324|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK291351|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK315236|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##L10386|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC109075|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC109076|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##X17568|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##X17567|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##BC080516|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK301034|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK312620|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK301206|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK307093|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##BC003530|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##J04564|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##NM_003091|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##NM_198216|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1	0.0	0.03047	
chr20	2506568	2506723	reg1004575.p2	5.824	+	AK096911 NM_024325	-16868	-	BC002897 TSC_hg19_v1_chr20_-_2489551	-17082	-	TSC_hg19_v1_chr20_-_2451439 BC003530 J04564 NM_003091 NM_198216	-55172	-	AF417580 NM_080751 AB463320	10613	+	BC104791 BC104793 NM_006392 TSC_hg19_v1_chr20_+_2633277 AK292721 BX647439 BC035369	126606	+	AL050094 TSC_hg19_v1_chr20_-_2641583	134891	-	AK096911|ZNF343|79175|zinc finger protein 343##NM_024325|ZNF343|79175|zinc finger protein 343##BC002897|ZNF343|79175|zinc finger protein 343##BC003530|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##J04564|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##NM_003091|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##NM_198216|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AF417580|TMC2|117532|transmembrane channel-like 2##NM_080751|TMC2|117532|transmembrane channel-like 2##BC104791|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BC104793|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##NM_006392|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##AK292721|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BX647439|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BC035369|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##AL050094|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta	1.986949	0.0	denovo_WM_7:-55:0.540	denovo_WM_7:-56:0.270	denovo_WM_7:-70:0.329	denovo_WM_7:-71:0.599
chr16	11675930	11676013	reg1000564.p1	5.823	+	TSC_hg19_v1_chr16_+_11439315 BC013040	-236653	+	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	-236677	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-300829	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	4216	-	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	4818	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	86327	+	BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin	0.0	0.0	
chr2	56565838	56566006	reg1008100.p2	5.823	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-153013	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-154156	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-154717	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	1707832	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	1708066	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	1902560	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	0.568851	0.0	denovo_WM_7:-41:0.308	denovo_WM_7:-44:0.223
chr5	106805258	106805414	reg1010307.p1	5.823	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3906855	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4210879	+	BC024591 NM_015216 AB463068	-4340062	+	AK308672 NM_001962 U26403	201254	-	TSC_hg19_v1_chr5_-_107717106 AK126722	911794	-	BC063316 NM_001163315	912462	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.997305	0.023025	denovo_WM_7:28:0.783
chr6	17704521	17704658	reg1003581.p1	5.823	+	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	-103990	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-310807	+	AK055391 NM_153020 BC104808 BC104810 BC040928	-421585	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	2313	-	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	283171	-	TSC_hg19_v1_chr6_-_17987867 BC062673 NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113	283277	-	NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK055391|RBM24|221662|RNA binding motif protein 24##NM_153020|RBM24|221662|RNA binding motif protein 24##BC104808|RBM24|221662|RNA binding motif protein 24##BC104810|RBM24|221662|RNA binding motif protein 24##BC040928|RBM24|221662|RNA binding motif protein 24##Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A##BC062673|KIF13A|63971|kinesin family member 13A##NM_001105566|KIF13A|63971|kinesin family member 13A##NM_001105567|KIF13A|63971|kinesin family member 13A##NM_001105568|KIF13A|63971|kinesin family member 13A##NM_001243423|KIF13A|63971|kinesin family member 13A##NM_022113|KIF13A|63971|kinesin family member 13A	0.998499	0.0	denovo_WM_7:-58:0.457	denovo_WM_7:-59:0.457
chr13	101326145	101326295	reg1006091.p1	5.822	+	TSC_hg19_v1_chr13_-_101241029 AK095850 NM_001195087	-85193	-	AK091974 BC001077 BC004360 NM_033110	-140221	-	NM_000282 NM_001127692 NM_001178004 TSC_hg19_v1_chr13_+_100741349 AF385926 AK298318 AK225288 AK225299 AK296771 AK315503 BC000140 X14608	-584861	+	AK299859 TSC_hg19_v1_chr13_-_101327050 BX648008 AK056409 AK290345 BX647956	836	-	NM_001079669 NM_032813 TSC_hg19_v1_chr13_-_101327108	889	-	AY141972 AK094669 BC012128 NM_052867 TSC_hg19_v1_chr13_-_102068817	742541	-	AK095850|A2LD1|87769|AIG2-like domain 1##NM_001195087|A2LD1|87769|AIG2-like domain 1##AK091974|A2LD1|87769|AIG2-like domain 1##BC001077|A2LD1|87769|AIG2-like domain 1##BC004360|A2LD1|87769|AIG2-like domain 1##NM_033110|A2LD1|87769|AIG2-like domain 1##NM_000282|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##NM_001127692|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##NM_001178004|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AF385926|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK298318|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK225288|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK225299|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK296771|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK315503|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##BC000140|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##X14608|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK299859|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##BX648008|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK056409|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AK290345|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##BX647956|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##NM_001079669|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##NM_032813|TMTC4|84899|transmembrane and tetratricopeptide repeat containing 4##AY141972|NALCN|259232|sodium leak channel, non-selective##AK094669|NALCN|259232|sodium leak channel, non-selective##BC012128|NALCN|259232|sodium leak channel, non-selective##NM_052867|NALCN|259232|sodium leak channel, non-selective	0.968666	0.0	denovo_WM_7:57:0.697
chr5	138956874	138957043	reg1005391.p2	5.822	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	-15610	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-16033	+	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	-16185	+	TSC_hg19_v1_chr5_+_139027874 AK024338	70916	+	TSC_hg19_v1_chr5_+_139027942 BC006428	70972	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	71026	+	U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK024338|CXXC5|51523|CXXC finger protein 5##BC006428|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5	1.106306	0.0	
chr12	40014773	40014953	reg1004544.p1	5.821	+	AK314254 NM_005164	-1021	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	-177864	-	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-715480	-	BC038754 NM_001031748 BC048120 AK097445	5132	+	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	484826	-	TSC_hg19_v1_chr12_-_40499870 BC047507	485009	-	AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13	1.98785	0.0	denovo_WM_7:33:0.917	denovo_WM_7:48:0.908
chr9	140632857	140633037	reg1004156.p2	5.821	+	TSC_hg19_v1_chr9_+_140513456 BC025772 AK022941	-119480	+	BC047504 NM_001145527 NM_024757 TSC_hg19_v1_chr9_+_140513443	-119504	+	TSC_hg19_v1_chr9_-_140513273 BC011781 AF267857 NM_032937	-119654	-	AB028932 AB058779 TSC_hg19_v1_chr9_+_140638543	5582	+	TSC_hg19_v1_chr9_+_140772233 M94172 M94173 NM_000718 NM_001243812	139287	+	TSC_hg19_v1_chr9_+_140918045 AB209467	285127	+	BC025772|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##AK022941|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##BC047504|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##NM_001145527|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##NM_024757|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##BC011781|C9orf37|85026|chromosome 9 open reading frame 37##AF267857|C9orf37|85026|chromosome 9 open reading frame 37##NM_032937|C9orf37|85026|chromosome 9 open reading frame 37##AB028932|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##AB058779|EHMT1|79813|euchromatic histone-lysine N-methyltransferase 1##M94172|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##M94173|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##NM_000718|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##NM_001243812|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit##AB209467|CACNA1B|774|calcium channel, voltage-dependent, N type, alpha 1B subunit	0.0	0.0	
chr17	30232605	30232785	reg1005691.p1	5.820	+	TSC_hg19_v1_chr17_-_30228769 AK299806	-3931	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	-3964	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	-4029	-	TSC_hg19_v1_chr17_+_30264046 NM_015355	31348	+	TSC_hg19_v1_chr17_+_30264057 AK290014	31362	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	31380	+	AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)	0.816337	0.0	denovo_WM_7:9:0.567
chr6	108025814	108025937	reg1005819.p2	5.820	+	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	-214447	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	-245145	-	BC131628 NM_001080450	-590240	-	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	119641	-	AF100141 CU690382 CU690568 BC001153 TSC_hg19_v1_chr6_-_108279282 AK074835	253382	-	TSC_hg19_v1_chr6_-_108279316 AJ011779	253437	-	NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AF100141|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC001153|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK074835|SEC63|11231|SEC63 homolog (S. cerevisiae)##AJ011779|SEC63|11231|SEC63 homolog (S. cerevisiae)	0.989624	0.77606	denovo_WM_7:-16:0.294	denovo_WM_7:-17:0.295	denovo_WM_7:-18:0.348
chr5	73622955	73623089	reg1007653.p2	5.819	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-513672	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-701037	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-761440	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	313441	-	AK096578 NM_003633	314226	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	357986	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	0.278411	0.0	
chr6	365596	365720	reg1000298.p3	5.819	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-73161	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-73573	+	None	None	None	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	26106	+	AF508547 BC101697 BC101699 NM_148959	291295	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	327432	-	AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2	0.997236	0.0	
chr9	135226487	135226636	reg1007054.p1	5.819	+	AB058760 NM_032536 TSC_hg19_v1_chr9_+_135037469	-189158	+	TSC_hg19_v1_chr9_+_135037083 AY358165	-189470	+	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	-271311	-	TSC_hg19_v1_chr9_-_135230312 AK125448	3669	-	TSC_hg19_v1_chr9_-_135230352 AK307608 BX537849	3787	-	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	3846	-	AB058760|NTNG2|84628|netrin G2##NM_032536|NTNG2|84628|netrin G2##AY358165|NTNG2|84628|netrin G2##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AK125448|SETX|23064|senataxin##AK307608|SETX|23064|senataxin##BX537849|SETX|23064|senataxin##BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin	0.0	0.0	
chr3	101707833	101707950	reg1007069.p1	5.818	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-139517	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-160931	+	AK289689 NM_001134456	-209606	+	AY090780 NM_175056 BC143817	445976	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3377689	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3377931	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	0.998585	0.0	
chr7	65381065	65381223	reg1008800.p2	5.818	+	TSC_hg19_v1_chr7_+_65338352 AK304077	-42768	+	AK289522 TSC_hg19_v1_chr7_+_65338347	-42799	+	TSC_hg19_v1_chr7_+_65338277 BC027734 NM_173517 BX647631 AY423045	-42895	+	TSC_hg19_v1_chr7_+_65419443 AK001747	38372	+	AK000750 TSC_hg19_v1_chr7_+_65420514	39368	+	TSC_hg19_v1_chr7_-_65447185 BC014142 DQ892941 DQ896190 CU680802	66030	-	AK304077|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK289522|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BC027734|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##NM_173517|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BX647631|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AY423045|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK001747|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK000750|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BC014142|GUSB|2990|glucuronidase, beta##DQ892941|GUSB|2990|glucuronidase, beta##DQ896190|GUSB|2990|glucuronidase, beta	1.027568	0.0	denovo_WM_7:-30:0.228	denovo_WM_7:-31:0.228	denovo_WM_7:-32:0.228	denovo_WM_7:-33:0.228
chr12	51058333	51058464	reg1001513.p1	5.817	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-159499	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-159643	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-188811	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	99480	+	TSC_hg19_v1_chr12_+_51158275 AK299240	99860	+	NM_182559 BC035123 BC048112 CU690554	178325	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	0.0	0.016172	
chr4	185240855	185241000	reg1006956.p2	5.816	+	BC035035 AY358676 AK057370 NM_153343	-101862	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-413016	+	TSC_hg19_v1_chr4_+_184827807 AK289840	-413107	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	154754	-	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	329674	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	329906	+	BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK289840|STOX2|56977|storkhead box 2##X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111	0.056508	0.0	
chr12	53297858	53298026	reg1007235.p1	5.815	+	AB463817 AX721217 AK298636 AK096419 AK290901 NM_173352	-55196	-	AJ564105 BC063648 NM_175834 BC039148	-69873	-	CU692074 EU832356 EU832441 BC042174 X67683 BC012867 AK098110 AK296582 AK299394 AK299400 AK299451 AK307941 NM_002272	-90071	-	CU687300 AB528612 AM392826 AM392892 DQ892637 DQ895875 U76549 M34225 M26512 BC075839 BC073760 X74929 BC000654 Z36777 BC063513 TSC_hg19_v1_chr12_-_53298839 AK222941 D28446 NM_002273	874	-	NM_199187 AK308506	44719	+	NM_000224 TSC_hg19_v1_chr12_+_53342874	44919	+	AK298636|KRT78|196374|keratin 78##AK096419|KRT78|196374|keratin 78##AK290901|KRT78|196374|keratin 78##NM_173352|KRT78|196374|keratin 78##AJ564105|KRT79|338785|keratin 79##BC063648|KRT79|338785|keratin 79##NM_175834|KRT79|338785|keratin 79##BC039148|KRT79|338785|keratin 79##EU832356|KRT4|3851|keratin 4##EU832441|KRT4|3851|keratin 4##BC042174|KRT4|3851|keratin 4##X67683|KRT4|3851|keratin 4##BC012867|KRT4|3851|keratin 4##AK098110|KRT4|3851|keratin 4##AK296582|KRT4|3851|keratin 4##AK299394|KRT4|3851|keratin 4##AK299400|KRT4|3851|keratin 4##AK299451|KRT4|3851|keratin 4##AK307941|KRT4|3851|keratin 4##NM_002272|KRT4|3851|keratin 4##AM392826|KRT8|3856|keratin 8##AM392892|KRT8|3856|keratin 8##DQ892637|KRT8|3856|keratin 8##DQ895875|KRT8|3856|keratin 8##U76549|KRT8|3856|keratin 8##M34225|KRT8|3856|keratin 8##M26512|KRT8|3856|keratin 8##BC075839|KRT8|3856|keratin 8##BC073760|KRT8|3856|keratin 8##X74929|KRT8|3856|keratin 8##BC000654|KRT8|3856|keratin 8##Z36777|KRT8|3856|keratin 8##BC063513|KRT8|3856|keratin 8##AK222941|KRT8|3856|keratin 8##NM_002273|KRT8|3856|keratin 8##NM_199187|KRT18|3875|keratin 18##AK308506|KRT18|3875|keratin 18##NM_000224|KRT18|3875|keratin 18	0.970608	0.0	denovo_WM_7:-10:0.347
chr13	30767535	30767694	reg1004357.p1	5.815	+	TSC_hg19_v1_chr13_-_30424811 NM_007106	-342773	-	TSC_hg19_v1_chr13_-_30424719 AK056580	-342912	-	BC059385 BC044582 TSC_hg19_v1_chr13_-_30424481	-343208	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	113537	-	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	113955	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	272379	-	NM_007106|UBL3|5412|ubiquitin-like 3##AK056580|UBL3|5412|ubiquitin-like 3##BC059385|UBL3|5412|ubiquitin-like 3##BC044582|UBL3|5412|ubiquitin-like 3##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1	0.998232	0.0	
chr1	39681250	39681415	reg1005810.p2	5.815	+	AK299010 NM_012090 TSC_hg19_v1_chr1_+_39547088	-134244	+	NM_001184979 NM_004552 TSC_hg19_v1_chr1_+_39492021 AK312188 AF047434 BC093057 AF020352 AF086268 BC001884	-189324	+	TSC_hg19_v1_chr1_+_39456956 NM_001136275 NM_024595 AK022728 AK092624 AX747634 AK124799 AK126262 AK223276 AK298890 AK303098 BC001498 BC119745 BC119746 AY326465	-224270	+	NM_015038	193843	+	TSC_hg19_v1_chr1_+_39922264 AK023821	240987	+	TSC_hg19_v1_chr1_+_39957300 AY303954 NM_181809 BC131617	276013	+	AK299010|MACF1|23499|microtubule-actin crosslinking factor 1##NM_012090|MACF1|23499|microtubule-actin crosslinking factor 1##NM_001184979|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_004552|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AK312188|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF047434|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC093057|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF020352|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF086268|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC001884|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_001136275|AKIRIN1|79647|akirin 1##NM_024595|AKIRIN1|79647|akirin 1##AK022728|AKIRIN1|79647|akirin 1##AK092624|AKIRIN1|79647|akirin 1##AK124799|AKIRIN1|79647|akirin 1##AK126262|AKIRIN1|79647|akirin 1##AK223276|AKIRIN1|79647|akirin 1##AK298890|AKIRIN1|79647|akirin 1##AK303098|AKIRIN1|79647|akirin 1##BC001498|AKIRIN1|79647|akirin 1##BC119745|AKIRIN1|79647|akirin 1##BC119746|AKIRIN1|79647|akirin 1##AY326465|AKIRIN1|79647|akirin 1##NM_015038|KIAA0754|643314|KIAA0754##AK023821|MACF1|23499|microtubule-actin crosslinking factor 1##AY303954|BMP8A|353500|bone morphogenetic protein 8a##NM_181809|BMP8A|353500|bone morphogenetic protein 8a##BC131617|BMP8A|353500|bone morphogenetic protein 8a	0.0	0.0	
chr16	89551687	89551867	reg1006697.p2	5.815	+	AK293862 NM_001242885	-164237	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-200821	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-201703	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	5154	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	23037	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	75288	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.994675	0.0	
chr19	39452788	39452968	reg1008345.p1	5.815	+	AK057934 NM_148169	-9552	-	TSC_hg19_v1_chr19_+_39421608 NM_021107 NM_033363 Y11681 BC007499 BC001617	-31275	+	NM_033362	-31531	+	BC012385 AF386743 NM_024907	13456	-	CU677033 TSC_hg19_v1_chr19_-_39522905	70021	-	TSC_hg19_v1_chr19_-_39523185 BC030060 AF436061 BC014527 NM_178820	70355	-	AK057934|FBXO17|115290|F-box protein 17##NM_148169|FBXO17|115290|F-box protein 17##NM_021107|MRPS12|6183|mitochondrial ribosomal protein S12##NM_033363|MRPS12|6183|mitochondrial ribosomal protein S12##Y11681|MRPS12|6183|mitochondrial ribosomal protein S12##BC007499|MRPS12|6183|mitochondrial ribosomal protein S12##BC001617|MRPS12|6183|mitochondrial ribosomal protein S12##NM_033362|MRPS12|6183|mitochondrial ribosomal protein S12##BC012385|FBXO17|115290|F-box protein 17##AF386743|FBXO17|115290|F-box protein 17##NM_024907|FBXO17|115290|F-box protein 17##BC030060|FBXO27|126433|F-box protein 27##AF436061|FBXO27|126433|F-box protein 27##BC014527|FBXO27|126433|F-box protein 27##NM_178820|FBXO27|126433|F-box protein 27	0.995454	0.859401	denovo_WM_7:-35:0.494	denovo_WM_7:-38:0.227	CTCF.p2:50:0.859
chr20	19975976	19976131	reg1007739.p1	5.815	+	TSC_hg19_v1_chr20_+_19955789 M37190	-20194	+	TSC_hg19_v1_chr20_+_19915762 BC034698 AL136924	-60304	+	BC128065 NM_018993 TSC_hg19_v1_chr20_+_19870217 AB060339	-105826	+	TSC_hg19_v1_chr20_+_19997934 NM_016100 NM_181528	21880	+	TSC_hg19_v1_chr20_+_19997975 AF085355 AK311819 BC008446	21916	+	TSC_hg19_v1_chr20_+_19998005 AL136641 BC005181	21946	+	M37190|RIN2|54453|Ras and Rab interactor 2##BC034698|RIN2|54453|Ras and Rab interactor 2##AL136924|RIN2|54453|Ras and Rab interactor 2##BC128065|RIN2|54453|Ras and Rab interactor 2##NM_018993|RIN2|54453|Ras and Rab interactor 2##AB060339|RIN2|54453|Ras and Rab interactor 2##NM_016100|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##NM_181528|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##AF085355|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##AK311819|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##BC008446|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##AL136641|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##BC005181|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit	0.0	0.635971	CTCF.p2:53:0.636
chr9	5626839	5626984	reg1007331.p2	5.815	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-116248	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-176404	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-189031	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	2216	+	BC036853 TSC_hg19_v1_chr9_-_5630098	3179	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	206040	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.98619	0.0	denovo_WM_7:-56:0.807
chrX	109129471	109129602	reg1008458.p1	5.815	+	TSC_hg19_v1_chrX_-_108976528 AB061713 AK292070 AF030555 NM_004458 NM_022977	-152972	-	TSC_hg19_v1_chrX_-_108976464 Y12777 Y13058 AB061714 BC034959 AK307566 AK294915	-153057	-	DQ891287 DQ894471 DQ896649 DQ896656 DQ896659 DQ896664 EF535525 BC035330 AJ012743 NM_012282 AK223306 AK314923 DQ192294 TSC_hg19_v1_chrX_-_108868398	-261212	-	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	116334	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	116804	+	TSC_hg19_v1_chrX_+_109246360 BC085605	116819	+	AB061713|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK292070|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AF030555|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_004458|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_022977|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y12777|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y13058|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AB061714|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##BC034959|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK307566|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK294915|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##DQ891287|KCNE1L|23630|KCNE1-like##DQ894471|KCNE1L|23630|KCNE1-like##DQ896649|KCNE1L|23630|KCNE1-like##DQ896656|KCNE1L|23630|KCNE1-like##DQ896659|KCNE1L|23630|KCNE1-like##DQ896664|KCNE1L|23630|KCNE1-like##EF535525|KCNE1L|23630|KCNE1-like##BC035330|KCNE1L|23630|KCNE1-like##AJ012743|KCNE1L|23630|KCNE1-like##NM_012282|KCNE1L|23630|KCNE1-like##AK223306|KCNE1L|23630|KCNE1-like##AK314923|KCNE1L|23630|KCNE1-like##DQ192294|KCNE1L|23630|KCNE1-like##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##BC085605|TMEM164|84187|transmembrane protein 164	0.949389	0.988387	CTCF.p2:15:0.988	denovo_WM_7:-58:0.462	denovo_WM_7:-59:0.225
chr15	37204992	37205158	reg1007511.p1	5.814	+	NM_032499	-272270	+	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	-333176	+	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	-1366689	-	CU674744 EU831754 EU831831 TSC_hg19_v1_chr15_-_37390403 AK294411 AK311546 AK056038 NM_172315	185391	-	AK056620 NM_172316 AB463111 CU690674 EU446635 EU831824 AK055936	186564	-	TSC_hg19_v1_chr15_-_37391935 AF178948 AF179896 AF179897 AF179898 AF179899	186844	-	NM_032499|C15orf41|84529|chromosome 15 open reading frame 41##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##EU831754|MEIS2|4212|Meis homeobox 2##EU831831|MEIS2|4212|Meis homeobox 2##AK294411|MEIS2|4212|Meis homeobox 2##AK311546|MEIS2|4212|Meis homeobox 2##AK056038|MEIS2|4212|Meis homeobox 2##NM_172315|MEIS2|4212|Meis homeobox 2##AK056620|MEIS2|4212|Meis homeobox 2##NM_172316|MEIS2|4212|Meis homeobox 2##EU446635|MEIS2|4212|Meis homeobox 2##EU831824|MEIS2|4212|Meis homeobox 2##AK055936|MEIS2|4212|Meis homeobox 2##AF178948|MEIS2|4212|Meis homeobox 2##AF179896|MEIS2|4212|Meis homeobox 2##AF179897|MEIS2|4212|Meis homeobox 2##AF179898|MEIS2|4212|Meis homeobox 2##AF179899|MEIS2|4212|Meis homeobox 2	0.991498	0.0	denovo_WM_7:-33:0.422	denovo_WM_7:-34:0.422
chr20	62184160	62184322	reg1007276.p2	5.814	+	AB527384 NM_080823	-5406	-	TSC_hg19_v1_chr20_-_62168681 AB527573 X78549 AK301691 AK315232 BC035843 NM_005975 AK301364	-15537	-	TSC_hg19_v1_chr20_+_62152117 BC002531 NM_024299 AK024699 AK311318	-32108	+	BC000912 NM_024059	131	+	AB051556 BC150283 NM_033405	14865	-	TSC_hg19_v1_chr20_-_62205593 AB232667 BC035130 AK023724 NM_001037335	21347	-	NM_080823|SRMS|6725|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites##X78549|PTK6|5753|PTK6 protein tyrosine kinase 6##AK301691|PTK6|5753|PTK6 protein tyrosine kinase 6##AK315232|PTK6|5753|PTK6 protein tyrosine kinase 6##BC035843|PTK6|5753|PTK6 protein tyrosine kinase 6##NM_005975|PTK6|5753|PTK6 protein tyrosine kinase 6##AK301364|PTK6|5753|PTK6 protein tyrosine kinase 6##BC002531|PPDPF|79144|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)##NM_024299|PPDPF|79144|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)##AK024699|PPDPF|79144|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)##BC000912|C20orf195|79025|chromosome 20 open reading frame 195##NM_024059|C20orf195|79025|chromosome 20 open reading frame 195##AB051556|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##BC150283|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##NM_033405|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##AB232667|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##BC035130|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##AK023724|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##NM_001037335|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285	0.0	0.0	
chr7	73516718	73516844	reg1008659.p2	5.814	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-9264	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	-18447	+	TSC_hg19_v1_chr7_+_73498160 D26309	-18626	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	71860	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	71922	+	NM_014146 NM_032463 NM_032464	107305	+	NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2	0.990773	0.0	denovo_WM_7:41:0.237	denovo_WM_7:42:0.237	denovo_WM_7:43:0.237	denovo_WM_7:44:0.237
chrX	148654808	148654921	reg1007762.p2	5.814	+	AK300334 NM_001171909	-28799	+	NM_001171907 NM_001171908 NM_178124 U66049 AK294153 AY074889 AK291899 BC065539 BC104930 BC104932 BC143660 BC143661 BC143662	-32270	+	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	-32434	-	BC002351 NM_005365 AK292272 AK313321 NM_001080790	14247	-	NM_001164415 NM_016153	22109	-	TSC_hg19_v1_chrX_-_148713302 BC103820 BC103821 BC103822	58435	-	AK300334|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171909|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171907|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171908|CXorf40A|91966|chromosome X open reading frame 40A##NM_178124|CXorf40A|91966|chromosome X open reading frame 40A##U66049|CXorf40A|91966|chromosome X open reading frame 40A##AK294153|CXorf40A|91966|chromosome X open reading frame 40A##AY074889|CXorf40A|91966|chromosome X open reading frame 40A##AK291899|CXorf40A|91966|chromosome X open reading frame 40A##BC065539|CXorf40A|91966|chromosome X open reading frame 40A##BC104930|CXorf40A|91966|chromosome X open reading frame 40A##BC104932|CXorf40A|91966|chromosome X open reading frame 40A##BC143660|CXorf40A|91966|chromosome X open reading frame 40A##BC143661|CXorf40A|91966|chromosome X open reading frame 40A##BC143662|CXorf40A|91966|chromosome X open reading frame 40A##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434##BC002351|MAGEA9|4108|melanoma antigen family A, 9##NM_005365|MAGEA9|4108|melanoma antigen family A, 9##AK292272|MAGEA9|4108|melanoma antigen family A, 9##AK313321|MAGEA9|4108|melanoma antigen family A, 9##NM_001080790|MAGEA9B|728269|melanoma antigen family A, 9B##NM_001164415|HSFX2|100130086|heat shock transcription factor family, X linked 2##NM_016153|HSFX1|100506164|heat shock transcription factor family, X linked 1##BC103820|TMEM185A|84548|transmembrane protein 185A##BC103821|TMEM185A|84548|transmembrane protein 185A##BC103822|TMEM185A|84548|transmembrane protein 185A	0.984154	0.0	denovo_WM_7:12:0.492	denovo_WM_7:13:0.492
chr13	41110595	41110704	reg1003384.p2	5.813	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-880788	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-933287	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-933322	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	130063	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	234643	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	234683	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	3.00798	0.0	denovo_WM_7:-49:0.271	denovo_WM_7:-70:0.224
chr3	181427331	181427503	reg1008874.p2	5.813	+	BC016393 TSC_hg19_v1_chr3_+_181417398 AL157425	-10025	+	NM_001190233 TSC_hg19_v1_chr3_-_180707525 AK311765 BC073989 BC009702 AK309019 AK307097 NM_145261	-719984	-	TSC_hg19_v1_chr3_+_180630462 AK294603 AK297254 AK297331 AK225334 AK292633 U25165 BC028983 AM393057 AM393164 AM393496 AB463046	-796939	+	NM_003106 TSC_hg19_v1_chr3_+_181429713 AK312595	2296	+	BC013923 L07335 Z31560 AB464715 EU446654 TSC_hg19_v1_chr3_+_181430202	2721	+	TSC_hg19_v1_chr3_+_182511288 BC042180 NM_014616	1083870	+	BC016393|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##AL157425|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##NM_001190233|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##AK311765|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##BC073989|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##BC009702|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##AK307097|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##NM_145261|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##AK294603|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK297254|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK297331|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK225334|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK292633|FXR1|8087|fragile X mental retardation, autosomal homolog 1##U25165|FXR1|8087|fragile X mental retardation, autosomal homolog 1##BC028983|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AM393057|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AM393164|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AM393496|FXR1|8087|fragile X mental retardation, autosomal homolog 1##NM_003106|SOX2|6657|SRY (sex determining region Y)-box 2##BC013923|SOX2|6657|SRY (sex determining region Y)-box 2##L07335|SOX2|6657|SRY (sex determining region Y)-box 2##Z31560|SOX2|6657|SRY (sex determining region Y)-box 2##EU446654|SOX2|6657|SRY (sex determining region Y)-box 2##BC042180|ATP11B|23200|ATPase, class VI, type 11B##NM_014616|ATP11B|23200|ATPase, class VI, type 11B	0.998021	0.988265	denovo_WM_7:0:0.427	denovo_WM_7:-1:0.479	CTCF.p2:76:0.988
chr5	142418636	142418788	reg1008680.p2	5.813	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-268404	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-268740	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-341141	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	364111	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	364394	-	BC015610 TSC_hg19_v1_chr5_-_142783214	364499	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.946613	0.0	denovo_WM_7:60:0.291	denovo_WM_7:61:0.217	denovo_WM_7:66:0.294
chr6	44186989	44187118	reg1002076.p2	5.813	+	NM_007058 AK314054 BC033733	-60492	+	TSC_hg19_v1_chr6_+_44095393 AK093629 AX748232 NM_018426 AK309791	-91647	+	TSC_hg19_v1_chr6_-_44095190 NM_032111	-91855	-	NM_001078174 NM_004955 TSC_hg19_v1_chr6_+_44187322 BC095398 AK090491 AK304285 AX746476 AB490708 AX775997 U81375 AF079117	303	+	TSC_hg19_v1_chr6_+_44191331 NM_001078175 NM_001078176 BC001382 AK293558 BC008954 NM_001078177	4290	+	TSC_hg19_v1_chr6_+_44191517 AK090615 AB490709	4525	+	NM_007058|CAPN11|11131|calpain 11##AK314054|CAPN11|11131|calpain 11##BC033733|CAPN11|11131|calpain 11##AK093629|TMEM63B|55362|transmembrane protein 63B##NM_018426|TMEM63B|55362|transmembrane protein 63B##AK309791|TMEM63B|55362|transmembrane protein 63B##NM_032111|MRPL14|64928|mitochondrial ribosomal protein L14##NM_001078174|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_004955|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC095398|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK090491|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK304285|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AB490708|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AX775997|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##U81375|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AF079117|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078175|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078176|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC001382|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK293558|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC008954|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078177|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK090615|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AB490709|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1	0.0	0.0	
chr18	43246490	43246669	reg1006312.p1	5.812	+	AF349446 NM_007163	-51814	+	NM_001242692 AK292422	-453627	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-985711	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	57525	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	57578	+	NM_001146037	60338	+	AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	0.994195	0.0	denovo_WM_7:-4:0.535	denovo_WM_7:-5:0.459
chr10	27148845	27148954	reg1000338.p1	5.811	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-91082	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-162253	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-162315	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	941	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	1040	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	1106	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	0.99251	0.0	denovo_WM_7:30:0.282	denovo_WM_7:31:0.355	denovo_WM_7:32:0.355
chr14	37348987	37349095	reg1007218.p2	5.811	+	AK313627 TSC_hg19_v1_chr14_+_37131133 AB248958	-217916	+	TSC_hg19_v1_chr14_+_37131069 BC001159	-217957	+	NM_006194	-222269	+	AJ278148 NM_001171170 NM_030631	292823	-	TSC_hg19_v1_chr14_+_37667116 NM_001195296 NM_001195297 NM_138731	318077	+	TSC_hg19_v1_chr14_+_37667148 BC035870 BX537396 AK291850 BC036523 BC036124 BX647795 AY059470	318179	+	AK313627|PAX9|5083|paired box 9##AB248958|PAX9|5083|paired box 9##BC001159|PAX9|5083|paired box 9##NM_006194|PAX9|5083|paired box 9##AJ278148|SLC25A21|89874|solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21##NM_001171170|SLC25A21|89874|solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21##NM_030631|SLC25A21|89874|solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21##NM_001195296|MIPOL1|145282|mirror-image polydactyly 1##NM_001195297|MIPOL1|145282|mirror-image polydactyly 1##NM_138731|MIPOL1|145282|mirror-image polydactyly 1##BC035870|MIPOL1|145282|mirror-image polydactyly 1##BX537396|MIPOL1|145282|mirror-image polydactyly 1##AK291850|MIPOL1|145282|mirror-image polydactyly 1##BC036523|MIPOL1|145282|mirror-image polydactyly 1##BC036124|MIPOL1|145282|mirror-image polydactyly 1##BX647795|MIPOL1|145282|mirror-image polydactyly 1##AY059470|MIPOL1|145282|mirror-image polydactyly 1	0.522067	0.0	denovo_WM_7:-7:0.264
chr20	37437660	37437771	reg1008261.p1	5.811	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-3361	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-60603	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-84556	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	117274	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	117353	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	153274	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.98179	0.0	denovo_WM_7:-25:0.846
chr5	32574169	32574279	reg1003243.p3	5.811	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-129288	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-129446	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-170871	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	11432	+	NM_001204376 AK300094 AK308301	136526	+	AK290870 NM_000908 NM_001204375 M59305	137264	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.997498	0.0	denovo_WM_7:30:0.884
chr8	96001314	96001437	reg1005530.p1	5.811	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-39718	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-93923	-	TSC_hg19_v1_chr8_+_95835588 BC136754 BC144396 BC144397	-165675	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	35929	+	TSC_hg19_v1_chr8_+_96145948 NM_024613	144570	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	144633	+	AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##BC136754|INTS8|55656|integrator complex subunit 8##BC144396|INTS8|55656|integrator complex subunit 8##BC144397|INTS8|55656|integrator complex subunit 8##NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.898252	0.0	denovo_WM_7:27:0.713
chr18	32290034	32290192	reg1008202.p2	5.810	+	NM_001128175 NM_001198938 NM_001198939 NM_001198940 AK308410 AL833285 BC005300 AB209102	-116809	+	AJ009668 TSC_hg19_v1_chr18_+_32073374	-216750	+	TSC_hg19_v1_chr18_+_32073264 NM_001198945 NM_001392 NM_032975 NM_032979 AK294746 U26742	-216849	+	NM_001198941 NM_032978 TSC_hg19_v1_chr18_+_32290229 AK291156	133	+	NM_001390 NM_001391 AB463020 BT006937 EU831587 EU831619 EU831672 EU831705	45826	+	AK296450 NM_001198943	107812	+	NM_001128175|DTNA|1837|dystrobrevin, alpha##NM_001198938|DTNA|1837|dystrobrevin, alpha##NM_001198939|DTNA|1837|dystrobrevin, alpha##NM_001198940|DTNA|1837|dystrobrevin, alpha##AK308410|DTNA|1837|dystrobrevin, alpha##AL833285|DTNA|1837|dystrobrevin, alpha##BC005300|DTNA|1837|dystrobrevin, alpha##AB209102|DTNA|1837|dystrobrevin, alpha##AJ009668|DTNA|1837|dystrobrevin, alpha##NM_001198945|DTNA|1837|dystrobrevin, alpha##NM_001392|DTNA|1837|dystrobrevin, alpha##NM_032975|DTNA|1837|dystrobrevin, alpha##NM_032979|DTNA|1837|dystrobrevin, alpha##AK294746|DTNA|1837|dystrobrevin, alpha##U26742|DTNA|1837|dystrobrevin, alpha##NM_001198941|DTNA|1837|dystrobrevin, alpha##NM_032978|DTNA|1837|dystrobrevin, alpha##AK291156|DTNA|1837|dystrobrevin, alpha##NM_001390|DTNA|1837|dystrobrevin, alpha##NM_001391|DTNA|1837|dystrobrevin, alpha##BT006937|DTNA|1837|dystrobrevin, alpha##EU831587|DTNA|1837|dystrobrevin, alpha##EU831619|DTNA|1837|dystrobrevin, alpha##EU831672|DTNA|1837|dystrobrevin, alpha##EU831705|DTNA|1837|dystrobrevin, alpha##AK296450|DTNA|1837|dystrobrevin, alpha##NM_001198943|DTNA|1837|dystrobrevin, alpha	0.142447	0.0	
chr20	13312249	13312429	reg1008710.p1	5.810	+	NM_080826 TSC_hg19_v1_chr20_+_13202422	-109916	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-322698	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	-1413782	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	307225	-	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	453202	-	TSC_hg19_v1_chr20_+_13765698 NM_001039375 NM_024120 AK289781 AK091060 AX746757 BC073158 CU687252 BC005984	453414	+	NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_001039375|C20orf7|79133|chromosome 20 open reading frame 7##NM_024120|C20orf7|79133|chromosome 20 open reading frame 7##AK289781|C20orf7|79133|chromosome 20 open reading frame 7##AK091060|C20orf7|79133|chromosome 20 open reading frame 7##BC073158|C20orf7|79133|chromosome 20 open reading frame 7##BC005984|C20orf7|79133|chromosome 20 open reading frame 7	0.999499	0.0	denovo_WM_7:-10:0.783
chr3	165286943	165287096	reg1008600.p1	5.810	+	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	-372514	-	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	-490741	-	NM_001080440	-4072424	+	M16474 BC018141 BC008396 TSC_hg19_v1_chr3_-_165555212 AK292063 M16541	268174	-	NM_000055 TSC_hg19_v1_chr3_-_165555283	268248	-	AK093296 AX748039 BC034229 NM_001199202 NM_001199201 NM_024687	1811058	-	BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001080440|OTOL1|131149|otolin 1##M16474|BCHE|590|butyrylcholinesterase##BC018141|BCHE|590|butyrylcholinesterase##BC008396|BCHE|590|butyrylcholinesterase##AK292063|BCHE|590|butyrylcholinesterase##M16541|BCHE|590|butyrylcholinesterase##NM_000055|BCHE|590|butyrylcholinesterase##AK093296|ZBBX|79740|zinc finger, B-box domain containing##BC034229|ZBBX|79740|zinc finger, B-box domain containing##NM_001199202|ZBBX|79740|zinc finger, B-box domain containing##NM_001199201|ZBBX|79740|zinc finger, B-box domain containing##NM_024687|ZBBX|79740|zinc finger, B-box domain containing	0.595296	0.0	denovo_WM_7:-14:0.379
chr6	135664052	135664168	reg1006280.p1	5.810	+	TSC_hg19_v1_chr6_+_135517056 X17469	-147021	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	-147204	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-161524	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	154715	-	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	154775	-	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	154854	+	X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271	0.973847	0.0	denovo_WM_7:-19:0.961
chr6	92156960	92157086	reg1007957.p1	5.810	+	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	-860185	-	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	-860340	-	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-1150411	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	1972160	-	TSC_hg19_v1_chr6_-_96025325 BC047582	3868266	-	TSC_hg19_v1_chr6_+_96025418 NM_024641 BX640869 AY048774 AY048775 BC146671 BC150199 CR936827 AK291940 BX537398	3868378	+	BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7##NM_024641|MANEA|79694|mannosidase, endo-alpha##BX640869|MANEA|79694|mannosidase, endo-alpha##AY048774|MANEA|79694|mannosidase, endo-alpha##AY048775|MANEA|79694|mannosidase, endo-alpha##BC146671|MANEA|79694|mannosidase, endo-alpha##BC150199|MANEA|79694|mannosidase, endo-alpha##CR936827|MANEA|79694|mannosidase, endo-alpha##AK291940|MANEA|79694|mannosidase, endo-alpha##BX537398|MANEA|79694|mannosidase, endo-alpha	1.038511	0.0	denovo_WM_7:40:0.706
chr1	36661189	36661287	reg1006384.p1	5.809	+	TSC_hg19_v1_chr1_+_36636693 AF218002 BC111428	-24462	+	TSC_hg19_v1_chr1_+_36621782 BC057293 AF064852 AK096341 BC106053 NM_018067	-39426	+	TSC_hg19_v1_chr1_+_36621723 AB033013	-39636	+	TSC_hg19_v1_chr1_+_36690029 NM_005119	28776	+	TSC_hg19_v1_chr1_+_36690047 BC065519 BC010997 AF117756 BC002501 BC019076 BC112330 BC112350	28824	+	EU446755 TSC_hg19_v1_chr1_+_36748231	86962	+	AF218002|MAP7D1|55700|MAP7 domain containing 1##BC111428|MAP7D1|55700|MAP7 domain containing 1##BC057293|MAP7D1|55700|MAP7 domain containing 1##AF064852|MAP7D1|55700|MAP7 domain containing 1##AK096341|MAP7D1|55700|MAP7 domain containing 1##BC106053|MAP7D1|55700|MAP7 domain containing 1##NM_018067|MAP7D1|55700|MAP7 domain containing 1##AB033013|MAP7D1|55700|MAP7 domain containing 1##NM_005119|THRAP3|9967|thyroid hormone receptor associated protein 3##BC065519|THRAP3|9967|thyroid hormone receptor associated protein 3##BC010997|THRAP3|9967|thyroid hormone receptor associated protein 3##AF117756|THRAP3|9967|thyroid hormone receptor associated protein 3##BC002501|THRAP3|9967|thyroid hormone receptor associated protein 3##BC019076|THRAP3|9967|thyroid hormone receptor associated protein 3##BC112330|THRAP3|9967|thyroid hormone receptor associated protein 3##BC112350|THRAP3|9967|thyroid hormone receptor associated protein 3##EU446755|THRAP3|9967|thyroid hormone receptor associated protein 3	0.997995	0.013958	denovo_WM_7:23:0.625	denovo_WM_7:24:0.242
chr6_ssto_hap7	3501166	3501301	reg1008671.p2	5.809	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.095536	0.0	denovo_WM_7:-25:0.963
chrX	53102389	53102547	reg1006059.p1	5.809	+	BC009861 NM_018969	-23963	+	BC067819 NM_001242489 NM_001242490 NM_001242492 NM_001242493 NM_001242494 NM_001242495 NM_001242496 NM_001242497 NM_014138	-77822	-	AK091598 AX747084 BX649013 CR749619 TSC_hg19_v1_chrX_-_52987693 AK057692 NM_001242491	-114806	-	TSC_hg19_v1_chrX_+_53111548 NM_022117 AK131220 AK292462 AY040871 AF273046 BC024270 AL713652 AB463325 AM392716 AF254794	9174	+	TSC_hg19_v1_chrX_+_53123332 EF565109	20938	+	BC054499 BC047751 TSC_hg19_v1_chrX_-_53254393 AK308077 AK304732	151919	-	BC009861|GPR173|54328|G protein-coupled receptor 173##NM_018969|GPR173|54328|G protein-coupled receptor 173##BC067819|FAM156A|29057|family with sequence similarity 156, member A##NM_001242489|FAM156A|29057|family with sequence similarity 156, member A##NM_001242490|FAM156A|29057|family with sequence similarity 156, member A##NM_001242492|FAM156A|29057|family with sequence similarity 156, member A##NM_001242493|FAM156A|29057|family with sequence similarity 156, member A##NM_001242494|FAM156A|29057|family with sequence similarity 156, member A##NM_001242495|FAM156A|29057|family with sequence similarity 156, member A##NM_001242496|FAM156A|29057|family with sequence similarity 156, member A##NM_001242497|FAM156A|29057|family with sequence similarity 156, member A##NM_014138|FAM156A|29057|family with sequence similarity 156, member A##AK091598|FAM156B|727866|family with sequence similarity 156, member B##BX649013|FAM156B|727866|family with sequence similarity 156, member B##CR749619|FAM156A|29057|family with sequence similarity 156, member A##AK057692|FAM156A|29057|family with sequence similarity 156, member A##NM_001242491|FAM156A|29057|family with sequence similarity 156, member A##NM_022117|TSPYL2|64061|TSPY-like 2##AK131220|TSPYL2|64061|TSPY-like 2##AK292462|TSPYL2|64061|TSPY-like 2##AY040871|TSPYL2|64061|TSPY-like 2##AF273046|TSPYL2|64061|TSPY-like 2##BC024270|TSPYL2|64061|TSPY-like 2##AL713652|TSPYL2|64061|TSPY-like 2##AM392716|TSPYL2|64061|TSPY-like 2##AF254794|TSPYL2|64061|TSPY-like 2##EF565109|LOC100132984|100132984|uncharacterized LOC100132984##BC054499|KDM5C|8242|lysine (K)-specific demethylase 5C##BC047751|KDM5C|8242|lysine (K)-specific demethylase 5C##AK308077|KDM5C|8242|lysine (K)-specific demethylase 5C##AK304732|KDM5C|8242|lysine (K)-specific demethylase 5C	0.997163	0.071218	denovo_WM_7:-55:0.424	denovo_WM_7:-56:0.424
chr15	78339456	78339618	reg1006872.p2	5.808	+	TSC_hg19_v1_chr15_-_77924732 AK291363	-414757	-	AY358284 TSC_hg19_v1_chr15_-_77924705 AY324320 BC011057 NM_032808	-414838	-	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	-626275	+	TSC_hg19_v1_chr15_-_78370032 AB028978 BC152465 NM_015079 NM_144572	30416	-	NM_001101404	45389	+	BT019962 CU690402 AB528675 AB012955 TSC_hg19_v1_chr15_-_78423867 AK293167 BC047381 BC057292 BC033108 NM_006383	84225	-	AK291363|LINGO1|84894|leucine rich repeat and Ig domain containing 1##AY358284|LINGO1|84894|leucine rich repeat and Ig domain containing 1##AY324320|LINGO1|84894|leucine rich repeat and Ig domain containing 1##BC011057|LINGO1|84894|leucine rich repeat and Ig domain containing 1##NM_032808|LINGO1|84894|leucine rich repeat and Ig domain containing 1##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A##AB028978|TBC1D2B|23102|TBC1 domain family, member 2B##BC152465|TBC1D2B|23102|TBC1 domain family, member 2B##NM_015079|TBC1D2B|23102|TBC1 domain family, member 2B##NM_144572|TBC1D2B|23102|TBC1 domain family, member 2B##NM_001101404|SH2D7|646892|SH2 domain containing 7##BT019962|CIB2|10518|calcium and integrin binding family member 2##AB012955|CIB2|10518|calcium and integrin binding family member 2##AK293167|CIB2|10518|calcium and integrin binding family member 2##BC047381|CIB2|10518|calcium and integrin binding family member 2##BC057292|CIB2|10518|calcium and integrin binding family member 2##BC033108|CIB2|10518|calcium and integrin binding family member 2##NM_006383|CIB2|10518|calcium and integrin binding family member 2	0.999132	0.0	denovo_WM_7:-20:0.239	denovo_WM_7:-21:0.239	denovo_WM_7:-22:0.239	denovo_WM_7:-23:0.239
chr3	9836590	9836723	reg1008431.p2	5.807	+	TSC_hg19_v1_chr3_+_9834779 AF006087 NM_001198780	-1867	+	AL117487 BC013433 BC009240 NM_006354 NM_133480	-2268	-	TSC_hg19_v1_chr3_+_9834219 NM_001198793 NM_005718 AK024110	-2434	+	NM_001025930	14987	+	TSC_hg19_v1_chr3_+_9852019 AK023960	15323	+	TSC_hg19_v1_chr3_-_9885680 CU687542 CU689290 AK092026 AX747321 BC032135 BC049846 BC062362	49014	-	AF006087|ARPC4|10093|actin related protein 2/3 complex, subunit 4, 20kDa##NM_001198780|ARPC4|10093|actin related protein 2/3 complex, subunit 4, 20kDa##AL117487|TADA3|10474|transcriptional adaptor 3##BC013433|TADA3|10474|transcriptional adaptor 3##BC009240|TADA3|10474|transcriptional adaptor 3##NM_006354|TADA3|10474|transcriptional adaptor 3##NM_133480|TADA3|10474|transcriptional adaptor 3##NM_001198793|ARPC4-TTLL3|100526693|ARPC4-TTLL3 readthrough##NM_005718|ARPC4|10093|actin related protein 2/3 complex, subunit 4, 20kDa##AK024110|ARPC4-TTLL3|100526693|ARPC4-TTLL3 readthrough##NM_001025930|TTLL3|26140|tubulin tyrosine ligase-like family, member 3##AK023960|TTLL3|26140|tubulin tyrosine ligase-like family, member 3##AK092026|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC032135|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC049846|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3##BC062362|RPUSD3|285367|RNA pseudouridylate synthase domain containing 3	0.997651	0.0	denovo_WM_7:44:0.694
chr7	2926780	2926886	reg1007133.p1	5.807	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-43025	-	AK289723 AB075830 BC146753 NM_133463	-207675	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-255130	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	156629	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	414166	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1795005	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	0.889243	0.0	denovo_WM_7:64:0.870
chr16	1755863	1756043	reg1003600.p2	5.806	+	TSC_hg19_v1_chr16_+_1728290 BC014438 AK296888 AK303927 AY598330 AK309930	-27647	+	BC060853 TSC_hg19_v1_chr16_+_1728289	-27667	+	AK309909 AK296998 NM_144570 TSC_hg19_v1_chr16_+_1728279 AK023154	-27685	+	TSC_hg19_v1_chr16_+_1756229 AB621811 AB028989 BC150266 NM_001040439 NM_015133 AK024437 BC137123 BC137124 BC144486 CR749696	317	+	TSC_hg19_v1_chr16_-_1821542 AK308663 AB528303 DQ892515 EU176697 U29656	65586	-	BC000250 NM_002513 TSC_hg19_v1_chr16_-_1821728	65786	-	BC014438|HN1L|90861|hematological and neurological expressed 1-like##AK296888|HN1L|90861|hematological and neurological expressed 1-like##AK303927|HN1L|90861|hematological and neurological expressed 1-like##AY598330|HN1L|90861|hematological and neurological expressed 1-like##AK309930|HN1L|90861|hematological and neurological expressed 1-like##BC060853|HN1L|90861|hematological and neurological expressed 1-like##AK309909|HN1L|90861|hematological and neurological expressed 1-like##AK296998|HN1L|90861|hematological and neurological expressed 1-like##NM_144570|HN1L|90861|hematological and neurological expressed 1-like##AK023154|HN1L|90861|hematological and neurological expressed 1-like##AB028989|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC150266|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##NM_001040439|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##NM_015133|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##AK024437|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC137123|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC137124|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##BC144486|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##CR749696|MAPK8IP3|23162|mitogen-activated protein kinase 8 interacting protein 3##AK308663|NME3|4832|non-metastatic cells 3, protein expressed in##DQ892515|NME3|4832|non-metastatic cells 3, protein expressed in##EU176697|NME3|4832|non-metastatic cells 3, protein expressed in##U29656|NME3|4832|non-metastatic cells 3, protein expressed in##BC000250|NME3|4832|non-metastatic cells 3, protein expressed in##NM_002513|NME3|4832|non-metastatic cells 3, protein expressed in	0.0	0.0	
chr17	36134780	36134932	reg1007561.p1	5.806	+	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	-29805	-	AB528419 BT007126 CR536572 DQ891528 EU176615 TSC_hg19_v1_chr17_-_36104898	-29970	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	-131379	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	149137	+	BC033670 BC047739 AL136860 AK301823 BC071680 BC078140 AK302064 AK313329 NM_001123391 NM_032258	213769	-	BC067792 TSC_hg19_v1_chr17_-_36413224	278381	-	HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##BT007126|HNF1B|6928|HNF1 homeobox B##CR536572|HNF1B|6928|HNF1 homeobox B##DQ891528|HNF1B|6928|HNF1 homeobox B##EU176615|HNF1B|6928|HNF1 homeobox B##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##AK302064|TBC1D3|729873|TBC1 domain family, member 3##AK313329|TBC1D3|729873|TBC1 domain family, member 3##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##BC067792|LOC440434|440434|aminopeptidase puromycin sensitive pseudogene	0.0	0.0	
chr22	35704820	35704945	reg1000817.p2	5.806	+	TSC_hg19_v1_chr22_+_35695886 AK097066 AK297827 AK295918 AK296670 AK314522 AK097926 CR456595 BC005144 BC040006 BC046151 AB463301 CU013195 CU013483 CU692314	-8986	+	TSC_hg19_v1_chr22_+_35695855 NM_001135730 NM_001135732 NM_005488 AK026576 AJ006973 AY358980	-9051	+	AK293694 NM_001135729	-9615	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	72186	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	72244	+	AF051791 TSC_hg19_v1_chr22_+_35779219	74280	+	AK097066|TOM1|10043|target of myb1 (chicken)##AK297827|TOM1|10043|target of myb1 (chicken)##AK295918|TOM1|10043|target of myb1 (chicken)##AK296670|TOM1|10043|target of myb1 (chicken)##AK314522|TOM1|10043|target of myb1 (chicken)##AK097926|TOM1|10043|target of myb1 (chicken)##CR456595|TOM1|10043|target of myb1 (chicken)##BC040006|TOM1|10043|target of myb1 (chicken)##BC046151|TOM1|10043|target of myb1 (chicken)##CU013195|TOM1|10043|target of myb1 (chicken)##CU013483|TOM1|10043|target of myb1 (chicken)##NM_001135730|TOM1|10043|target of myb1 (chicken)##NM_001135732|TOM1|10043|target of myb1 (chicken)##NM_005488|TOM1|10043|target of myb1 (chicken)##AK026576|TOM1|10043|target of myb1 (chicken)##AJ006973|TOM1|10043|target of myb1 (chicken)##AY358980|TOM1|10043|target of myb1 (chicken)##AK293694|TOM1|10043|target of myb1 (chicken)##NM_001135729|TOM1|10043|target of myb1 (chicken)##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##AF051791|HMOX1|3162|heme oxygenase (decycling) 1	0.0	0.0	
chr3	47014041	47014219	reg1007635.p1	5.806	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-90388	+	BC112221 BC112247 NM_000316 U17418 X68596	-94881	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-109205	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	4115	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	7117	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	15340	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.336645	0.0	
chr14	68808637	68808771	reg1006696.p1	5.805	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-522184	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-525405	-	AK315462 NM_152443	-640102	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	451016	-	NM_001244698 NM_004926	451926	-	NM_001244701 AB528867	454280	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.459882	0.0	denovo_WM_7:11:0.270
chr19	5322921	5323040	reg1007364.p4	5.805	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-290081	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-353807	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-353856	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	17814	-	AK098722 NM_181710 AK292251 BC017592	132446	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	299778	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	1.901306	0.0	denovo_WM_7:-48:0.740
chr5	10249403	10249563	reg1000065.p1	5.805	+	BC095521 NM_019599	-619021	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	-703289	-	TSC_hg19_v1_chr5_+_7869306 BC062577	-2380173	+	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	501	-	AK300042 TSC_hg19_v1_chr5_-_10250001 AK316317 AK055604 AK302012 NM_199133	522	-	NM_012073 AK302368 TSC_hg19_v1_chr5_+_10250368	842	+	BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC063406|FAM173B|134145|family with sequence similarity 173, member B##AK300042|FAM173B|134145|family with sequence similarity 173, member B##AK316317|FAM173B|134145|family with sequence similarity 173, member B##AK055604|FAM173B|134145|family with sequence similarity 173, member B##AK302012|FAM173B|134145|family with sequence similarity 173, member B##NM_199133|FAM173B|134145|family with sequence similarity 173, member B##NM_012073|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK302368|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)	0.994586	0.0	
chr12	50523182	50523361	reg1007234.p1	5.804	+	TSC_hg19_v1_chr12_+_50506018 BC007849 NM_032901 AK312180	-17355	+	AK130162 TSC_hg19_v1_chr12_+_50497790 BC032234 NM_005276 AK295911 L34041 AK312516 DQ890626 DQ893793 CU689308	-25460	+	TSC_hg19_v1_chr12_+_50479124 AK292700 AK293932 AK130517 AB527887 CU679327 EU447009 BC000063 AF109733	-44158	+	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	37820	-	TSC_hg19_v1_chr12_-_50561112 AK026014	37854	-	TSC_hg19_v1_chr12_-_50561153 AK298924	37954	-	BC007849|C12orf62|84987|chromosome 12 open reading frame 62##NM_032901|C12orf62|84987|chromosome 12 open reading frame 62##AK312180|C12orf62|84987|chromosome 12 open reading frame 62##AK130162|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##BC032234|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##NM_005276|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK295911|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##L34041|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK312516|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ890626|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ893793|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK292700|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK293932|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130517|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##EU447009|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC000063|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AF109733|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5##AK298924|CERS5|91012|ceramide synthase 5	0.997584	0.0	
chr16	84661920	84662100	reg1007867.p2	5.804	+	TSC_hg19_v1_chr16_-_84651682 L54057 BC053682 BC010039 NM_021149 AK315675 BC016702 BC042970	-10350	-	AB590839 BT006968 EU832743 TSC_hg19_v1_chr16_-_84651627 BC010884	-10434	-	BC023251 TSC_hg19_v1_chr16_-_84538263 AB046829 BC060844 AK291237 NM_020947 AK300132 AK310887	-123719	-	TSC_hg19_v1_chr16_+_84682127 BC033821 NM_024731 BC032400	20124	+	NM_005153 TSC_hg19_v1_chr16_+_84733587 BC000263	71564	+	TSC_hg19_v1_chr16_+_84733603 AK315570 CR749515	71590	+	L54057|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC053682|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010039|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_021149|COTL1|23406|coactosin-like 1 (Dictyostelium)##AK315675|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC016702|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC042970|COTL1|23406|coactosin-like 1 (Dictyostelium)##BT006968|COTL1|23406|coactosin-like 1 (Dictyostelium)##EU832743|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010884|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC023251|KIAA1609|57707|KIAA1609##AB046829|KIAA1609|57707|KIAA1609##BC060844|KIAA1609|57707|KIAA1609##AK291237|KIAA1609|57707|KIAA1609##NM_020947|KIAA1609|57707|KIAA1609##AK300132|KIAA1609|57707|KIAA1609##AK310887|KIAA1609|57707|KIAA1609##BC033821|KLHL36|79786|kelch-like 36 (Drosophila)##NM_024731|KLHL36|79786|kelch-like 36 (Drosophila)##BC032400|KLHL36|79786|kelch-like 36 (Drosophila)##NM_005153|USP10|9100|ubiquitin specific peptidase 10##BC000263|USP10|9100|ubiquitin specific peptidase 10##AK315570|USP10|9100|ubiquitin specific peptidase 10##CR749515|USP10|9100|ubiquitin specific peptidase 10	1.055673	0.0	
chr18	48354339	48354465	reg1010775.p1	5.804	+	BC029860 NM_001127174	-2660	-	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	-8037	-	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	-267905	+	TSC_hg19_v1_chr18_+_48405434 NM_001168335 NM_002396	51032	+	TSC_hg19_v1_chr18_+_48405496 BC000147 AK313391 M55905	51141	+	TSC_hg19_v1_chr18_+_48494384 NM_018696	139948	+	BC029860|MRO|83876|maestro##NM_001127174|MRO|83876|maestro##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##NM_001168335|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##NM_002396|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##BC000147|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##AK313391|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##M55905|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##NM_018696|ELAC1|55520|elaC homolog 1 (E. coli)	0.987518	0.0	denovo_WM_7:66:0.236	denovo_WM_7:67:0.236	denovo_WM_7:68:0.236	denovo_WM_7:69:0.236
chr8	30514350	30514530	reg1008625.p1	5.804	+	NM_001206847	-18324	+	NM_001008710 NM_001008711 NM_001008712 NM_006867 AK304858 D84107 D84108 D84109 D84110 TSC_hg19_v1_chr8_+_30242056 BC003608	-272431	+	Z36874 TSC_hg19_v1_chr8_+_30209759	-304703	+	S67861 TSC_hg19_v1_chr8_-_30515718 X63469 BC030572 BC001775 NM_002095	1296	-	BC035691 TSC_hg19_v1_chr8_-_30585320 X15722 AB519179 AB519180 AB519181 AF228704 CU686724	70846	-	BC069244 TSC_hg19_v1_chr8_-_30585478 NM_000637 NM_001195102 NM_001195103 NM_001195104	71026	-	NM_001206847|LOC100507341|100507341|uncharacterized LOC100507341##NM_001008710|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008711|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008712|RBPMS|11030|RNA binding protein with multiple splicing##NM_006867|RBPMS|11030|RNA binding protein with multiple splicing##AK304858|RBPMS|11030|RNA binding protein with multiple splicing##D84107|RBPMS|11030|RNA binding protein with multiple splicing##D84108|RBPMS|11030|RNA binding protein with multiple splicing##D84109|RBPMS|11030|RNA binding protein with multiple splicing##D84110|RBPMS|11030|RNA binding protein with multiple splicing##BC003608|RBPMS|11030|RNA binding protein with multiple splicing##S67861|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##X63469|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC030572|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC001775|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_002095|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC035691|GSR|2936|glutathione reductase##X15722|GSR|2936|glutathione reductase##AB519179|GSR|2936|glutathione reductase##AB519180|GSR|2936|glutathione reductase##AB519181|GSR|2936|glutathione reductase##AF228704|GSR|2936|glutathione reductase##BC069244|GSR|2936|glutathione reductase##NM_000637|GSR|2936|glutathione reductase##NM_001195102|GSR|2936|glutathione reductase##NM_001195103|GSR|2936|glutathione reductase##NM_001195104|GSR|2936|glutathione reductase	0.995254	0.0	denovo_WM_7:-102:0.234	denovo_WM_7:-103:0.234	denovo_WM_7:-104:0.234	denovo_WM_7:-105:0.234
chr11	74479290	74479410	reg1008335.p1	5.803	+	TSC_hg19_v1_chr11_+_74459915 AB082522 NM_001098638	-19442	+	BC142623 TSC_hg19_v1_chr11_-_74442472	-36897	-	NM_015424 AK304519 AY358522 AY279090 AY279091	-37145	-	TSC_hg19_v1_chr11_-_74660137 AK056364	180774	-	TSC_hg19_v1_chr11_-_74660150 BC064584 BC037294 BC040541	180806	-	TSC_hg19_v1_chr11_-_74660177 NM_182969 CR749605	180854	-	AB082522|RNF169|254225|ring finger protein 169##NM_001098638|RNF169|254225|ring finger protein 169##BC142623|CHRDL2|25884|chordin-like 2##NM_015424|CHRDL2|25884|chordin-like 2##AK304519|CHRDL2|25884|chordin-like 2##AY358522|CHRDL2|25884|chordin-like 2##AY279090|CHRDL2|25884|chordin-like 2##AY279091|CHRDL2|25884|chordin-like 2##AK056364|XRRA1|143570|X-ray radiation resistance associated 1##BC064584|XRRA1|143570|X-ray radiation resistance associated 1##BC037294|XRRA1|143570|X-ray radiation resistance associated 1##BC040541|XRRA1|143570|X-ray radiation resistance associated 1##NM_182969|XRRA1|143570|X-ray radiation resistance associated 1##CR749605|XRRA1|143570|X-ray radiation resistance associated 1	0.0	0.0	
chr12	68985726	68985813	reg1004349.p2	5.803	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-259663	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-338465	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-366217	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	18877	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	18926	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	18939	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.047513	0.0	
chr17	1534871	1535050	reg1008207.p1	5.803	+	TSC_hg19_v1_chr17_-_1532115 BC027923 NM_152346 BC071859	-2816	-	AF289592 TSC_hg19_v1_chr17_-_1531711 AB120364	-3320	-	BC082976 TSC_hg19_v1_chr17_-_1466077 BC027177 D30036 M73704 BC045108 BC068538 NM_006224	-68878	-	D63483 AK310174 AB052950 AB052949 AB052947 D86864 TSC_hg19_v1_chr17_-_1549050 AK291810 AB052948 BC039735 NM_003693 NM_145350 NM_145352 AK298737	14077	-	DQ892467 DQ895680 TSC_hg19_v1_chr17_-_1553162 BC031621 AF370391 AJ404317 AK055755 AK314767 AJ278711 NM_031430	18285	-	TSC_hg19_v1_chr17_-_1588115 AB007510 AF092565	53148	-	BC027923|SLC43A2|124935|solute carrier family 43, member 2##NM_152346|SLC43A2|124935|solute carrier family 43, member 2##BC071859|SLC43A2|124935|solute carrier family 43, member 2##AF289592|SLC43A2|124935|solute carrier family 43, member 2##AB120364|SLC43A2|124935|solute carrier family 43, member 2##BC082976|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC027177|PITPNA|5306|phosphatidylinositol transfer protein, alpha##D30036|PITPNA|5306|phosphatidylinositol transfer protein, alpha##M73704|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC045108|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC068538|PITPNA|5306|phosphatidylinositol transfer protein, alpha##NM_006224|PITPNA|5306|phosphatidylinositol transfer protein, alpha##D63483|SCARF1|8578|scavenger receptor class F, member 1##AK310174|SCARF1|8578|scavenger receptor class F, member 1##AB052950|SCARF1|8578|scavenger receptor class F, member 1##AB052949|SCARF1|8578|scavenger receptor class F, member 1##AB052947|SCARF1|8578|scavenger receptor class F, member 1##D86864|SCARF1|8578|scavenger receptor class F, member 1##AK291810|SCARF1|8578|scavenger receptor class F, member 1##AB052948|SCARF1|8578|scavenger receptor class F, member 1##BC039735|SCARF1|8578|scavenger receptor class F, member 1##NM_003693|SCARF1|8578|scavenger receptor class F, member 1##NM_145350|SCARF1|8578|scavenger receptor class F, member 1##NM_145352|SCARF1|8578|scavenger receptor class F, member 1##AK298737|SCARF1|8578|scavenger receptor class F, member 1##DQ892467|RILP|83547|Rab interacting lysosomal protein##DQ895680|RILP|83547|Rab interacting lysosomal protein##BC031621|RILP|83547|Rab interacting lysosomal protein##AF370391|RILP|83547|Rab interacting lysosomal protein##AJ404317|RILP|83547|Rab interacting lysosomal protein##AK055755|RILP|83547|Rab interacting lysosomal protein##AK314767|RILP|83547|Rab interacting lysosomal protein##AJ278711|RILP|83547|Rab interacting lysosomal protein##NM_031430|RILP|83547|Rab interacting lysosomal protein##AB007510|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)##AF092565|PRPF8|10594|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)	0.417899	0.0	
chr5	150159883	150160062	reg1007604.p2	5.803	+	TSC_hg19_v1_chr5_+_150158318 AK027847 BC082259 AF313413 BC009719	-1618	+	AK125286 NM_032947	-2465	+	CU693212 DQ892339 DQ895544 TSC_hg19_v1_chr5_-_150138580 AF195120 AK000299 AK296787 BC026323 AK025873 AK311693 AK307757 NM_001135643 NM_016221	-21367	-	EU742619 NM_001145805	66112	+	BC117248 BC032607 DQ908918 TSC_hg19_v1_chr5_-_150284372	124361	-	AF395541 TSC_hg19_v1_chr5_-_150284395	124426	-	AK027847|C5orf62|85027|chromosome 5 open reading frame 62##AF313413|C5orf62|85027|chromosome 5 open reading frame 62##BC009719|C5orf62|85027|chromosome 5 open reading frame 62##AK125286|C5orf62|85027|chromosome 5 open reading frame 62##NM_032947|C5orf62|85027|chromosome 5 open reading frame 62##DQ892339|DCTN4|51164|dynactin 4 (p62)##DQ895544|DCTN4|51164|dynactin 4 (p62)##AF195120|DCTN4|51164|dynactin 4 (p62)##AK000299|DCTN4|51164|dynactin 4 (p62)##AK296787|DCTN4|51164|dynactin 4 (p62)##BC026323|DCTN4|51164|dynactin 4 (p62)##AK311693|DCTN4|51164|dynactin 4 (p62)##AK307757|DCTN4|51164|dynactin 4 (p62)##NM_001135643|DCTN4|51164|dynactin 4 (p62)##NM_016221|DCTN4|51164|dynactin 4 (p62)##EU742619|IRGM|345611|immunity-related GTPase family, M##NM_001145805|IRGM|345611|immunity-related GTPase family, M##BC117248|ZNF300|91975|zinc finger protein 300##BC032607|ZNF300|91975|zinc finger protein 300##DQ908918|ZNF300|91975|zinc finger protein 300##AF395541|ZNF300|91975|zinc finger protein 300	0.375196	0.0	denovo_WM_7:-9:0.362
chr14	34793619	34793768	reg1006432.p1	5.802	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-373544	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1385203	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1995157	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	137794	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	215192	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	305662	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.997909	0.479581	denovo_WM_7:-11:0.290	denovo_WM_7:-12:0.290	denovo_WM_7:-13:0.290	CTCF.p2:57:0.480
chr16	31274818	31274990	reg1007171.p2	5.802	+	TSC_hg19_v1_chr16_+_31271330 AK127637 AB384734	-3550	+	TSC_hg19_v1_chr16_+_31271311 J03925 BC096346 BC096347 BC096348 BC099660	-3587	+	TSC_hg19_v1_chr16_+_31271295 AK057856 NM_000632 NM_001145808 M18044	-3611	+	TSC_hg19_v1_chr16_+_31366508 AK296666 AK309642 NM_000887	91588	+	TSC_hg19_v1_chr16_+_31366521 M81695	91618	+	TSC_hg19_v1_chr16_+_31366549 BC037577 BC038237 DQ892486 DQ895697	91647	+	AK127637|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##J03925|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096346|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096347|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096348|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC099660|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##AK057856|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##NM_000632|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##NM_001145808|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##M18044|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##AK296666|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##AK309642|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##NM_000887|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##M81695|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##BC037577|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##BC038237|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##DQ892486|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##DQ895697|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)	1.846673	0.0	denovo_WM_7:18:0.221	denovo_WM_7:19:0.596	denovo_WM_7:90:0.713
chr12	12584283	12584393	reg1006732.p2	5.801	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-74173	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-81166	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-164496	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	131062	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	180457	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	180545	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.99033	0.0	denovo_WM_7:7:0.237	denovo_WM_7:8:0.237	denovo_WM_7:9:0.237	denovo_WM_7:10:0.237
chr2	242067212	242067359	reg1007059.p1	5.801	+	TSC_hg19_v1_chr2_-_242041703 BC053533 AK093695 AK291665 AK294192 BX648184 AK131298 AF161359 AK296515 NM_182501	-25559	-	NM_001080437	-129031	+	AK056601 NM_001085437	-231713	-	TSC_hg19_v1_chr2_-_242088865 D50925 AF387103 BC063585 AK056516 AK302417 BC050565 AK302561 NM_001252119 NM_001252122 NM_001252124 NM_015148	21586	-	AK308015 BC051689 TSC_hg19_v1_chr2_+_242089094	21773	+	CR749231 NM_001252120	22108	-	BC053533|MTERFD2|130916|MTERF domain containing 2##AK093695|MTERFD2|130916|MTERF domain containing 2##AK291665|MTERFD2|130916|MTERF domain containing 2##AK294192|MTERFD2|130916|MTERF domain containing 2##BX648184|MTERFD2|130916|MTERF domain containing 2##AK131298|MTERFD2|130916|MTERF domain containing 2##AF161359|MTERFD2|130916|MTERF domain containing 2##AK296515|MTERFD2|130916|MTERF domain containing 2##NM_182501|MTERFD2|130916|MTERF domain containing 2##NM_001080437|SNED1|25992|sushi, nidogen and EGF-like domains 1##AK056601|C2orf54|79919|chromosome 2 open reading frame 54##NM_001085437|C2orf54|79919|chromosome 2 open reading frame 54##D50925|PASK|23178|PAS domain containing serine/threonine kinase##AF387103|PASK|23178|PAS domain containing serine/threonine kinase##BC063585|PASK|23178|PAS domain containing serine/threonine kinase##AK056516|PASK|23178|PAS domain containing serine/threonine kinase##AK302417|PASK|23178|PAS domain containing serine/threonine kinase##BC050565|PASK|23178|PAS domain containing serine/threonine kinase##AK302561|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252119|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252122|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252124|PASK|23178|PAS domain containing serine/threonine kinase##NM_015148|PASK|23178|PAS domain containing serine/threonine kinase##AK308015|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC051689|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##CR749231|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252120|PASK|23178|PAS domain containing serine/threonine kinase	0.0	0.0	
chr11	102483782	102483909	reg1009622.p1	5.800	+	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	-82386	-	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	-160232	-	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-265817	+	AB527354 NM_004771 Y12779	12210	-	AB527320 AF195192 AY358752 NM_022122	92610	-	BC074988 BC074989 BC144094 J05556 AK292659 AK303388 AK303511 AK313374 NM_002424	111808	-	DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20##AF195192|MMP27|64066|matrix metallopeptidase 27##AY358752|MMP27|64066|matrix metallopeptidase 27##NM_022122|MMP27|64066|matrix metallopeptidase 27##BC074988|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##BC074989|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##BC144094|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##J05556|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK292659|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK303388|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK303511|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK313374|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##NM_002424|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)	0.0	0.0	
chr12	127257126	127257295	reg1007170.p2	5.800	+	NM_052907	-1446049	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-1707142	+	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	-1707269	+	NM_001136103	1494737	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	2051233	-	BC043528 TSC_hg19_v1_chr12_+_129337985	2080774	+	NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##NM_001136103|TMEM132C|92293|transmembrane protein 132C##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1	0.994061	0.0	denovo_WM_7:75:0.299	denovo_WM_7:76:0.299	denovo_WM_7:77:0.299
chr19	19928171	19928351	reg1009080.p1	5.800	+	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	-41056	-	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	-84414	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	-148604	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	4291	-	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	48423	+	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	83523	+	BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93	0.998551	0.0	denovo_WM_7:-9:0.881
chr20	47463512	47463692	reg1003352.p1	5.800	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-19163	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-19316	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1048284	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	74716	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	199224	+	TSC_hg19_v1_chr20_+_47662875 AF053640	199286	+	AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)	0.0	0.0	
chr12	4245230	4245368	reg1006959.p2	5.799	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-262799	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-382917	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-383031	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	137745	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	185092	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	243501	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	0.848103	0.0	denovo_WM_7:3:0.202	denovo_WM_7:7:0.509
chr1	177787352	177787532	reg1008720.p1	5.798	+	AB051534 AB161694 BC028036 NM_021165	-646861	+	AK296524 TSC_hg19_v1_chr1_+_177140093	-647364	+	TSC_hg19_v1_chr1_-_177134042 AK309094	-653367	-	AB063357 NM_033127 TSC_hg19_v1_chr1_-_177939202	151684	-	BC009106 TSC_hg19_v1_chr1_-_177939393	151928	-	TSC_hg19_v1_chr1_-_178007060 AK092831 BX538051 AB067515	219657	-	AB051534|FAM5B|57795|family with sequence similarity 5, member B##AB161694|FAM5B|57795|family with sequence similarity 5, member B##BC028036|FAM5B|57795|family with sequence similarity 5, member B##NM_021165|FAM5B|57795|family with sequence similarity 5, member B##AK296524|FAM5B|57795|family with sequence similarity 5, member B##AK309094|ASTN1|460|astrotactin 1##AB063357|SEC16B|89866|SEC16 homolog B (S. cerevisiae)##NM_033127|SEC16B|89866|SEC16 homolog B (S. cerevisiae)##BC009106|SEC16B|89866|SEC16 homolog B (S. cerevisiae)##AK092831|LOC730102|730102|quinone oxidoreductase-like protein 2 pseudogene##BX538051|LOC730102|730102|quinone oxidoreductase-like protein 2 pseudogene	0.998926	0.0	denovo_WM_7:-79:0.427	denovo_WM_7:-80:0.479
chr19	13905840	13905940	reg1000202.p3	5.798	+	TSC_hg19_v1_chr19_+_13885286 BC015465 AF086483 AF078852 DQ891569 DQ894761 AK311855	-20606	+	TSC_hg19_v1_chr19_+_13885269 NM_014047	-20625	+	TSC_hg19_v1_chr19_+_13875374 AY358176 BC001703 EU832338 EU832423 AM392616 AM393224 AB528180	-30499	+	TSC_hg19_v1_chr19_+_13906256 AK024452 NM_023072	355	+	AL832183 BX640708 TSC_hg19_v1_chr19_-_13947102	41212	-	BC101209 BC101210 NM_001098622	82172	+	BC015465|C19orf53|28974|chromosome 19 open reading frame 53##AF086483|C19orf53|28974|chromosome 19 open reading frame 53##AF078852|C19orf53|28974|chromosome 19 open reading frame 53##DQ891569|C19orf53|28974|chromosome 19 open reading frame 53##DQ894761|C19orf53|28974|chromosome 19 open reading frame 53##AK311855|C19orf53|28974|chromosome 19 open reading frame 53##NM_014047|C19orf53|28974|chromosome 19 open reading frame 53##AY358176|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##BC001703|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832338|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##EU832423|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM392616|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AM393224|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##AK024452|ZSWIM4|65249|zinc finger, SWIM-type containing 4##NM_023072|ZSWIM4|65249|zinc finger, SWIM-type containing 4##AL832183|LOC284454|284454|uncharacterized LOC284454##BX640708|LOC284454|284454|uncharacterized LOC284454##BC101209|NANOS3|342977|nanos homolog 3 (Drosophila)##BC101210|NANOS3|342977|nanos homolog 3 (Drosophila)##NM_001098622|NANOS3|342977|nanos homolog 3 (Drosophila)	0.0	0.0	
chr2	74406130	74406244	reg1001793.p1	5.798	+	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	-280	-	AL122062 TSC_hg19_v1_chr2_-_74382411	-23806	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-30967	+	AK057260 TSC_hg19_v1_chr2_-_74425749	19528	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	19550	+	AF243499 AF293338 NM_021196	135963	-	AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AF243499|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##AF293338|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##NM_021196|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5	0.0	0.0	
chr12	44230556	44230715	reg1009075.p2	5.797	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-729	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-30523	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-77856	+	D89629 AK315960 AK299277 NM_001145109	1038756	-	BC020544 TSC_hg19_v1_chr12_-_45269991	1039342	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	1039470	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	0.261422	0.0	denovo_WM_7:35:0.210
chr1	53309257	53309406	reg1009433.p1	5.797	+	AY271826 NM_001004339	-1149	+	TSC_hg19_v1_chr1_-_53238345 D28429	-70988	-	TSC_hg19_v1_chr1_+_53192124 AK296460 NM_024646 AB051517	-117213	+	TSC_hg19_v1_chr1_-_53387217 AK300896 AK299834	77896	-	TSC_hg19_v1_chr1_-_53387399 CU692200 BC038389 BC044574 AK315906 AK310650 AK001810	78038	-	TSC_hg19_v1_chr1_-_53387413 BC051887 BC040480 NM_001198961 NM_001198962 NM_018281 AK309535	78162	-	AY271826|ZYG11A|440590|zyg-11 homolog A (C. elegans)##NM_001004339|ZYG11A|440590|zyg-11 homolog A (C. elegans)##AK296460|ZYG11B|79699|zyg-11 homolog B (C. elegans)##NM_024646|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AB051517|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AK300896|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK299834|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC038389|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC044574|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK315906|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK310650|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK001810|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC051887|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC040480|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_001198961|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_001198962|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_018281|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK309535|ECHDC2|55268|enoyl CoA hydratase domain containing 2	1.159588	0.0	denovo_WM_7:37:0.267	denovo_WM_7:38:0.267	denovo_WM_7:39:0.403
chr18	69996852	69997012	reg1008515.p1	5.797	+	TSC_hg19_v1_chr18_+_67956280 BC020082	-2040671	+	NM_004232 TSC_hg19_v1_chr18_+_67956194	-2040765	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	-2123994	-	BC110843 BC035789 TSC_hg19_v1_chr18_-_70210781 AK291364	213843	-	NM_182511 TSC_hg19_v1_chr18_-_70211738	214798	-	AF448839 NM_138999	536001	-	BC020082|SOCS6|9306|suppressor of cytokine signaling 6##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##BC110843|CBLN2|147381|cerebellin 2 precursor##BC035789|CBLN2|147381|cerebellin 2 precursor##AK291364|CBLN2|147381|cerebellin 2 precursor##NM_182511|CBLN2|147381|cerebellin 2 precursor##AF448839|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##NM_138999|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1	0.093943	0.0	
chr7	26004318	26004463	reg1007110.p2	5.797	+	AB040290 AF330057 AF440392 NM_022150	-736310	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-784519	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	-839450	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	187543	+	TSC_hg19_v1_chr7_-_26232151 BX538099	227761	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	235951	-	AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.385917	0.0	denovo_WM_7:-5:0.386
chr1	120833565	120833704	reg1008790.p1	5.796	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-221319	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-221368	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-221428	-	NM_001100910	5370	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	102275	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	102318	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.989257	0.0	denovo_WM_7:-29:0.962
chr1	156128780	156128890	reg1005495.p1	5.796	+	NM_001193300 NM_022367 AK296693 TSC_hg19_v1_chr1_+_156123375 AK091127 AK290353 AX746794 NM_001193302 AK315547 BX640891 BC020974	-5481	+	NM_001193301 AY358531	-9064	+	TSC_hg19_v1_chr1_+_156084585 AY528714 AB527090 EU831758 EU831836 EU832167 EU832261 CU677029 CU678414 AY847595 AY847596 AY847597	-44191	+	TSC_hg19_v1_chr1_+_156163725 NM_014655	34903	+	TSC_hg19_v1_chr1_+_156163907 AK074912 AK299747 AK307968 AK309678 AK309690 BC008843 AK075002 AK294524 AK293778	35057	+	TSC_hg19_v1_chr1_+_156163911 AB007915 BC039854	35083	+	NM_001193300|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_022367|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK296693|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK091127|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK290353|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193302|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK315547|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BX640891|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BC020974|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193301|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AY358531|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AY528714|LMNA|4000|lamin A/C##EU831758|LMNA|4000|lamin A/C##EU831836|LMNA|4000|lamin A/C##EU832167|LMNA|4000|lamin A/C##EU832261|LMNA|4000|lamin A/C##AY847595|LMNA|4000|lamin A/C##AY847596|LMNA|4000|lamin A/C##AY847597|LMNA|4000|lamin A/C##NM_014655|SLC25A44|9673|solute carrier family 25, member 44##AK074912|SLC25A44|9673|solute carrier family 25, member 44##AK299747|SLC25A44|9673|solute carrier family 25, member 44##AK307968|SLC25A44|9673|solute carrier family 25, member 44##AK309678|SLC25A44|9673|solute carrier family 25, member 44##AK309690|SLC25A44|9673|solute carrier family 25, member 44##BC008843|SLC25A44|9673|solute carrier family 25, member 44##AK075002|SLC25A44|9673|solute carrier family 25, member 44##AK294524|SLC25A44|9673|solute carrier family 25, member 44##AB007915|SLC25A44|9673|solute carrier family 25, member 44##BC039854|SLC25A44|9673|solute carrier family 25, member 44	0.99897	0.0	denovo_WM_7:-2:0.314	denovo_WM_7:-3:0.314	denovo_WM_7:-4:0.314
chr11	70436822	70436955	reg1008696.p2	5.796	+	TSC_hg19_v1_chr11_+_70244653 NM_001184740 NM_005231 NM_138565 AK222613 AK291097 BC033889 BC008799 M98343	-192235	+	TSC_hg19_v1_chr11_-_70244476 AK125463	-192373	-	D49354 TSC_hg19_v1_chr11_+_70194450	-242467	+	AF141901 BC114484 BC113876 TSC_hg19_v1_chr11_-_70507895	70979	-	TSC_hg19_v1_chr11_-_70507919 AB208027 NM_133266	71030	-	BC093885 BC112097 BC143389 TSC_hg19_v1_chr11_-_70507947	71062	-	NM_001184740|CTTN|2017|cortactin##NM_005231|CTTN|2017|cortactin##NM_138565|CTTN|2017|cortactin##AK222613|CTTN|2017|cortactin##AK291097|CTTN|2017|cortactin##BC033889|CTTN|2017|cortactin##BC008799|CTTN|2017|cortactin##M98343|CTTN|2017|cortactin##D49354|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##AF141901|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC114484|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC113876|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##AB208027|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##NM_133266|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC093885|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC112097|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC143389|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2	0.995533	0.0	denovo_WM_7:-5:0.982
chr16	70442666	70442783	reg1003072.p1	5.795	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-61896	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-109576	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-109648	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	30257	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	45775	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	60116	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	2.072173	0.0	denovo_WM_7:77:0.290	denovo_WM_7:78:0.208
chr14	64215499	64215635	reg1005503.p4	5.794	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-20818	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-107005	-	BX248008 NM_001008726	-107443	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	104128	+	NM_182913 AY061758 AK297874	465310	+	NM_182910	467104	+	AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.999054	0.0	
chr2	85982951	85983071	reg1007998.p1	5.794	+	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-2006	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-61531	+	NM_000542 NM_198843	-87148	-	AY152815 NM_001042437	111781	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	133075	-	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	349972	-	NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa	0.997462	0.0	denovo_WM_7:18:0.867
chr15	75746267	75746447	reg1000153.p1	5.793	+	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	-2300	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	-2455	-	AK225145 TSC_hg19_v1_chr15_-_75660949 AK294892 AK301170 AK311065	-85400	-	AL832463 NM_001145357	1766	-	CU687108 TSC_hg19_v1_chr15_-_75871151 BT007405 CU679831 DQ890986 BC010863	124762	-	TSC_hg19_v1_chr15_-_75871604 M83738 NM_002833	125209	-	AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK225145|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK294892|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK301170|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK311065|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BT007405|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##DQ890986|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##BC010863|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##M83738|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##NM_002833|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9	0.0	0.0	
chr17	18274987	18275099	reg1007619.p1	5.793	+	TSC_hg19_v1_chr17_-_18266810 BC007979 BC022874 BC038598 AK223552 AK298415 AK302834 AF017065 NM_004169 NM_148918	-8259	-	TSC_hg19_v1_chr17_+_18218610 BC142680 AF467440 BC001018 BC005067 BC014179 BC101115 BC101116 BC101117	-56380	+	TSC_hg19_v1_chr17_+_18218606 AK296847	-56437	+	BC036791 NM_001145127 AK298286 BC026998	6044	+	AK296659 NM_001040078 AK315818 BC073889 BC105943 TSC_hg19_v1_chr17_+_18380141 CU687266	105089	+	BC101585 BC104815 BC143561 TSC_hg19_v1_chr17_-_18528914 BC062767 BX647826 AK093811 AX748319	253864	-	BC007979|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##BC022874|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##BC038598|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AK223552|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AK298415|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AK302834|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##AF017065|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##NM_004169|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##NM_148918|SHMT1|6470|serine hydroxymethyltransferase 1 (soluble)##BC142680|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##AF467440|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC001018|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC005067|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC014179|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC101115|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC101116|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC101117|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##AK296847|SMCR8|140775|Smith-Magenis syndrome chromosome region, candidate 8##BC036791|EVPLL|645027|envoplakin-like##NM_001145127|EVPLL|645027|envoplakin-like##AK298286|EVPLL|645027|envoplakin-like##BC026998|EVPLL|645027|envoplakin-like##AK296659|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##NM_001040078|LGALS9C|654346|lectin, galactoside-binding, soluble, 9C##AK315818|LGALS9C|654346|lectin, galactoside-binding, soluble, 9C##BC073889|LGALS9C|654346|lectin, galactoside-binding, soluble, 9C##BC105943|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##BC101585|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC104815|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC143561|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC062767|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BX647826|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##AK093811|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)	0.849123	0.0	denovo_WM_7:18:0.849
chr17	2500591	2500748	reg1007937.p2	5.793	+	TSC_hg19_v1_chr17_+_2497263 BX538346 AK313078 L13385 BC064638	-3411	+	TSC_hg19_v1_chr17_+_2496944 NM_000430 L13386	-3699	+	TSC_hg19_v1_chr17_-_2415189 BX647255 AK294547 BC050603 BC001213 AL832612 AK027410 AK296464 NM_024086	-85524	-	NM_015229 TSC_hg19_v1_chr17_-_2615039	114318	-	AK124640 TSC_hg19_v1_chr17_+_2680496	179754	+	AJ628446 AJ628447 NM_001100398 NM_015085 TSC_hg19_v1_chr17_+_2699761 CR627427 BC140870 BC140871	199084	+	BX538346|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AK313078|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13385|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BC064638|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##NM_000430|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13386|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BX647255|METTL16|79066|methyltransferase like 16##AK294547|METTL16|79066|methyltransferase like 16##BC050603|METTL16|79066|methyltransferase like 16##BC001213|METTL16|79066|methyltransferase like 16##AL832612|METTL16|79066|methyltransferase like 16##AK027410|METTL16|79066|methyltransferase like 16##AK296464|METTL16|79066|methyltransferase like 16##NM_024086|METTL16|79066|methyltransferase like 16##NM_015229|KIAA0664|23277|KIAA0664##AK124640|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628446|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628447|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_001100398|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015085|RAP1GAP2|23108|RAP1 GTPase activating protein 2##CR627427|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140870|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140871|RAP1GAP2|23108|RAP1 GTPase activating protein 2	1.07948	0.0	
chr2	102509023	102509203	reg1006776.p2	5.793	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-581	+	TSC_hg19_v1_chr2_+_102508334 BC045694	-771	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-194761	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	99250	+	BC027733 BC012346 NM_173343	106344	+	TSC_hg19_v1_chr2_+_102759205 X16896	250119	+	BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##X16896|IL1R1|3554|interleukin 1 receptor, type I	0.0	0.0	
chr3	46954679	46954748	reg1003975.p2	5.793	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-30971	+	BC112221 BC112247 NM_000316 U17418 X68596	-35464	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-49788	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	63532	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	66534	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	74757	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.995036	0.0	
chrX	14002062	14002214	reg1007592.p1	5.793	+	TSC_hg19_v1_chrX_-_13956758 AB209525 U45955 NM_001001994	-45310	-	TSC_hg19_v1_chrX_-_13956533 AK294314	-45607	-	BC012459 TSC_hg19_v1_chrX_-_13956504	-45664	-	BC003607 AK000521 BC014324 BC020785 NM_001042479 NM_001042480 NM_017856	45858	-	AK312591 NM_001118885 NM_001118886 NM_001171942 NM_002063 AK297304	545312	+	TSC_hg19_v1_chrX_-_14891182 BC136558 BC136560 BC043596 BC055411 NM_001018113 NM_152633 AK091383 AX746948	889037	-	AB209525|GPM6B|2824|glycoprotein M6B##U45955|GPM6B|2824|glycoprotein M6B##NM_001001994|GPM6B|2824|glycoprotein M6B##AK294314|GPM6B|2824|glycoprotein M6B##BC003607|GEMIN8|54960|gem (nuclear organelle) associated protein 8##AK000521|GEMIN8|54960|gem (nuclear organelle) associated protein 8##BC014324|GEMIN8|54960|gem (nuclear organelle) associated protein 8##BC020785|GEMIN8|54960|gem (nuclear organelle) associated protein 8##NM_001042479|GEMIN8|54960|gem (nuclear organelle) associated protein 8##NM_001042480|GEMIN8|54960|gem (nuclear organelle) associated protein 8##NM_017856|GEMIN8|54960|gem (nuclear organelle) associated protein 8##AK312591|GLRA2|2742|glycine receptor, alpha 2##NM_001118885|GLRA2|2742|glycine receptor, alpha 2##NM_001118886|GLRA2|2742|glycine receptor, alpha 2##NM_001171942|GLRA2|2742|glycine receptor, alpha 2##NM_002063|GLRA2|2742|glycine receptor, alpha 2##AK297304|GLRA2|2742|glycine receptor, alpha 2##BC136558|FANCB|2187|Fanconi anemia, complementation group B##BC136560|FANCB|2187|Fanconi anemia, complementation group B##BC043596|FANCB|2187|Fanconi anemia, complementation group B##BC055411|FANCB|2187|Fanconi anemia, complementation group B##NM_001018113|FANCB|2187|Fanconi anemia, complementation group B##NM_152633|FANCB|2187|Fanconi anemia, complementation group B##AK091383|FANCB|2187|Fanconi anemia, complementation group B	0.992845	0.0	denovo_WM_7:-15:0.977
chr20	46043691	46043848	reg1008922.p1	5.792	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-58281	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-67122	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-116200	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	86853	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	86915	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	370983	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.997593	0.0	denovo_WM_7:3:0.449	denovo_WM_7:4:0.449
chr20	49145281	49145420	reg1006827.p1	5.792	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	-18345	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-18418	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-18431	+	AK056792 NM_080829	108075	-	TSC_hg19_v1_chr20_-_49308074 AK124347	162727	-	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	202719	+	BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)	2.85206	0.0	denovo_WM_7:-52:0.868	denovo_WM_7:-68:0.734	denovo_WM_7:-92:0.983
chr5	180673200	180673380	reg1007884.p1	5.792	+	BC014256 TSC_hg19_v1_chr5_-_180670905 BC010119 BC019093 BC032006 BC035460 BC019362 BC014788 BC000366 M24194 BC021993 AK095666 AK301468 D28398 AK310916 AK222488 NM_006098 AK303316 BC000214	-2387	-	BC029996 AK301029 CR456978 CR541909 GU727632 CU689260 AM393661 DQ891422 DQ894596 AY336089 AB463707 TSC_hg19_v1_chr5_-_180670867 BC017287	-2489	-	TSC_hg19_v1_chr5_+_180650709 BC090953	-22565	+	AK054802 TSC_hg19_v1_chr5_-_180688115 BC007372 NM_032765 AB209243	14835	-	TSC_hg19_v1_chr5_+_180688213 BC016291	14937	+	BC137547 BC137568 NM_001005221 NM_001005224 NM_001005277	120987	+	BC014256|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC010119|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019093|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC032006|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC035460|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019362|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC014788|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000366|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##M24194|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC021993|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK095666|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK301468|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##D28398|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK310916|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK222488|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##NM_006098|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK303316|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000214|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC029996|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK301029|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##CR456978|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##CR541909|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##GU727632|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AM393661|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##DQ891422|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##DQ894596|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AY336089|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC017287|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC090953|TRIM41|90933|tripartite motif containing 41##AK054802|TRIM52|84851|tripartite motif containing 52##BC007372|TRIM52|84851|tripartite motif containing 52##NM_032765|TRIM52|84851|tripartite motif containing 52##AB209243|TRIM52|84851|tripartite motif containing 52##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16	0.0	0.0	
chr10	50508431	50508559	reg1004278.p2	5.791	+	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	-1284	+	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	-112069	-	BC029839 BC047597 NM_001164484	-166437	-	NM_001080520	91411	-	BC028954 AK074682 BC063690 NM_170753	223755	-	TSC_hg19_v1_chr10_-_50747072 BC127104 L04791	238562	-	AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##NM_001080520|DRGX|644168|dorsal root ganglia homeobox##BC028954|PGBD3|267004|piggyBac transposable element derived 3##AK074682|PGBD3|267004|piggyBac transposable element derived 3##BC063690|PGBD3|267004|piggyBac transposable element derived 3##NM_170753|PGBD3|267004|piggyBac transposable element derived 3##BC127104|ERCC6|2074|excision repair cross-complementing rodent repair deficiency, complementation group 6##L04791|ERCC6|2074|excision repair cross-complementing rodent repair deficiency, complementation group 6	0.99895	0.0	
chr10	79789559	79789681	reg1000105.p2	5.791	+	TSC_hg19_v1_chr10_-_79789304 NM_007055	-306	-	AF021351 AY091459 AB384941 TSC_hg19_v1_chr10_-_79789272 BC041089 AK300329	-399	-	AB384502 NM_004747 AB011155 BC146794 TSC_hg19_v1_chr10_-_79686514	-103218	-	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	3936	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	4011	+	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	1039168	+	NM_007055|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AF021351|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AY091459|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC041089|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AK300329|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##NM_004747|DLG5|9231|discs, large homolog 5 (Drosophila)##AB011155|DLG5|9231|discs, large homolog 5 (Drosophila)##BC146794|DLG5|9231|discs, large homolog 5 (Drosophila)##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.0	0.829045	CTCF.p2:46:0.829
chr20	36724485	36724665	reg1005198.p2	5.791	+	TSC_hg19_v1_chr20_+_36662228 AB463518 CU689672	-62298	+	TSC_hg19_v1_chr20_+_36662168 BC033629 AK312468 BC001696	-62408	+	TSC_hg19_v1_chr20_+_36661917 NM_021215 DQ372938	-62614	+	TSC_hg19_v1_chr20_-_36758362 M98479	33816	-	TSC_hg19_v1_chr20_-_36793673 AK291714 AK058031 AK295775 AK300292 AK314618 BC003551 NM_004613 NM_198951	69104	-	AK096202 NM_001029864	164598	-	BC033629|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##AK312468|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##BC001696|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##NM_021215|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##DQ372938|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##M98479|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK291714|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK058031|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK295775|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK300292|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK314618|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC003551|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##NM_004613|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##NM_198951|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK096202|KIAA1755|85449|KIAA1755##NM_001029864|KIAA1755|85449|KIAA1755	0.991278	0.0	denovo_WM_7:51:0.846
chr2	73400308	73400469	reg1008209.p2	5.791	+	TSC_hg19_v1_chr2_-_73340101 AF334812 AB020664 NM_015470	-60279	-	TSC_hg19_v1_chr2_-_73340066 BC035013	-60324	-	DQ890991 DQ894168 TSC_hg19_v1_chr2_-_73339998 BC099902	-60404	-	AK295936 NM_001134462 AK316410	29019	+	TSC_hg19_v1_chr2_+_73441372 NM_006062 AK300779 AK301809 BC073806 AB527925 U50383	41017	+	TSC_hg19_v1_chr2_-_73460365 AY358605 BC005069 NM_032319 AK312077	59976	-	AF334812|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##AB020664|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##NM_015470|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##BC035013|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##DQ890991|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##DQ894168|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##BC099902|RAB11FIP5|26056|RAB11 family interacting protein 5 (class I)##AK295936|NOTO|344022|notochord homeobox##NM_001134462|NOTO|344022|notochord homeobox##AK316410|NOTO|344022|notochord homeobox##NM_006062|SMYD5|10322|SMYD family member 5##AK300779|SMYD5|10322|SMYD family member 5##AK301809|SMYD5|10322|SMYD family member 5##BC073806|SMYD5|10322|SMYD family member 5##U50383|SMYD5|10322|SMYD family member 5##AY358605|PRADC1|84279|protease-associated domain containing 1##BC005069|PRADC1|84279|protease-associated domain containing 1##NM_032319|PRADC1|84279|protease-associated domain containing 1##AK312077|PRADC1|84279|protease-associated domain containing 1	0.997486	0.0	denovo_WM_7:57:0.884
chr3	168759551	168759661	reg1008400.p1	5.791	+	TSC_hg19_v1_chr3_-_167813684 AK307718 AK307557 NM_014498	-946175	-	TSC_hg19_v1_chr3_-_167813072 U55853 BC143232 BC143233 BC171748	-946491	-	NM_001122752 TSC_hg19_v1_chr3_+_167453508 AK290082 BC018043 NM_005025 CR627434 Z81326	-1306117	+	BC130520 BC143951 BC143952 AF164154 AF164155 AF164156 AF164157 NM_001105077 NM_001163999 NM_005241 X54989	104473	-	TSC_hg19_v1_chr3_-_168864325 AK292865 AF487422 NM_001105078	104756	-	BX640908 NM_001164000	105915	-	AK307718|GOLIM4|27333|golgi integral membrane protein 4##AK307557|GOLIM4|27333|golgi integral membrane protein 4##NM_014498|GOLIM4|27333|golgi integral membrane protein 4##U55853|GOLIM4|27333|golgi integral membrane protein 4##BC143232|GOLIM4|27333|golgi integral membrane protein 4##BC143233|GOLIM4|27333|golgi integral membrane protein 4##BC171748|GOLIM4|27333|golgi integral membrane protein 4##NM_001122752|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##AK290082|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC018043|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##NM_005025|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##CR627434|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##Z81326|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC130520|MECOM|2122|MDS1 and EVI1 complex locus##BC143951|MECOM|2122|MDS1 and EVI1 complex locus##BC143952|MECOM|2122|MDS1 and EVI1 complex locus##AF164154|MECOM|2122|MDS1 and EVI1 complex locus##AF164155|MECOM|2122|MDS1 and EVI1 complex locus##AF164156|MECOM|2122|MDS1 and EVI1 complex locus##AF164157|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105077|MECOM|2122|MDS1 and EVI1 complex locus##NM_001163999|MECOM|2122|MDS1 and EVI1 complex locus##NM_005241|MECOM|2122|MDS1 and EVI1 complex locus##X54989|MECOM|2122|MDS1 and EVI1 complex locus##AK292865|MECOM|2122|MDS1 and EVI1 complex locus##AF487422|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105078|MECOM|2122|MDS1 and EVI1 complex locus##BX640908|MECOM|2122|MDS1 and EVI1 complex locus##NM_001164000|MECOM|2122|MDS1 and EVI1 complex locus	0.999385	0.674761	CTCF.p2:7:0.675	denovo_WM_7:-31:0.739
chr4	1197526	1197674	reg1007995.p2	5.791	+	BC104228 BC104229 BC112991 BC112992 BC044945 AK091779 AX747178 TSC_hg19_v1_chr4_-_1195337	-2358	-	TSC_hg19_v1_chr4_-_1166969 NM_001128325	-30622	-	TSC_hg19_v1_chr4_-_1166567 AK074770 BC036341 AB027466 AY358948 NM_012445	-30999	-	CR627052 NM_001199021	5149	-	AB527760 DQ891918 DQ895102 TSC_hg19_v1_chr4_-_1242878 AF091555 BC011655 U37408	45210	-	TSC_hg19_v1_chr4_-_1242910 BC072021 BC053320 NM_001012614 NM_001328 BC098400	45308	-	BC104228|LOC100130872|100130872|uncharacterized LOC100130872##BC104229|LOC100130872|100130872|uncharacterized LOC100130872##BC112991|LOC100130872|100130872|uncharacterized LOC100130872##BC112992|LOC100130872|100130872|uncharacterized LOC100130872##BC044945|LOC100130872|100130872|uncharacterized LOC100130872##AK091779|LOC100130872|100130872|uncharacterized LOC100130872##NM_001128325|SPON2|10417|spondin 2, extracellular matrix protein##AK074770|SPON2|10417|spondin 2, extracellular matrix protein##BC036341|SPON2|10417|spondin 2, extracellular matrix protein##AB027466|SPON2|10417|spondin 2, extracellular matrix protein##AY358948|SPON2|10417|spondin 2, extracellular matrix protein##NM_012445|SPON2|10417|spondin 2, extracellular matrix protein##CR627052|LOC100130872|100130872|uncharacterized LOC100130872##NM_001199021|SPON2|10417|spondin 2, extracellular matrix protein##DQ891918|CTBP1|1487|C-terminal binding protein 1##DQ895102|CTBP1|1487|C-terminal binding protein 1##AF091555|CTBP1|1487|C-terminal binding protein 1##BC011655|CTBP1|1487|C-terminal binding protein 1##U37408|CTBP1|1487|C-terminal binding protein 1##BC072021|CTBP1|1487|C-terminal binding protein 1##BC053320|CTBP1|1487|C-terminal binding protein 1##NM_001012614|CTBP1|1487|C-terminal binding protein 1##NM_001328|CTBP1|1487|C-terminal binding protein 1##BC098400|CTBP1|1487|C-terminal binding protein 1	0.157992	0.0	
chr13	80817287	80817365	reg1013706.p1	5.790	+	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-761771	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	-761904	+	TSC_hg19_v1_chr13_+_80055257 NM_001161407 NM_019080 AB097019 AB097028 AB097029	-762055	+	BC004205 TSC_hg19_v1_chr13_-_80913114	95716	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	97738	-	TSC_hg19_v1_chr13_-_84456424 BC051738	3639099	-	AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##NM_001161407|NDFIP2|54602|Nedd4 family interacting protein 2##NM_019080|NDFIP2|54602|Nedd4 family interacting protein 2##AB097019|NDFIP2|54602|Nedd4 family interacting protein 2##AB097028|NDFIP2|54602|Nedd4 family interacting protein 2##AB097029|NDFIP2|54602|Nedd4 family interacting protein 2##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1	0.0	0.0	
chr18	77220486	77220656	reg1007666.p1	5.790	+	TSC_hg19_v1_chr18_+_77160328 NM_172387 NM_172389 U59736 AK293760 U80918 X99829 EU887560 EU887562 EU887564 EU887566	-60254	+	TSC_hg19_v1_chr18_+_77155967 U08015 BC104753 BC112243 BC143457 EU887559 EU887561 EU887563 EU887565	-64476	+	U80919 TSC_hg19_v1_chr18_+_77155946	-64625	+	BC045628 TSC_hg19_v1_chr18_+_77253425	32809	+	TSC_hg19_v1_chr18_-_77439359 AK002023	218742	-	TSC_hg19_v1_chr18_-_77439740 AK098581	219170	-	NM_172387|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172389|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U59736|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK293760|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80918|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887560|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887562|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887564|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887566|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U08015|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC104753|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC112243|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC143457|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887559|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887561|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887563|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##EU887565|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80919|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##BC045628|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK098581|FLJ25715|284241|uncharacterized protein FLJ25715	0.200916	0.0	
chr2	171033739	171033853	reg1005215.p1	5.790	+	TSC_hg19_v1_chr2_+_170683963 NM_172070	-349838	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	-352411	-	TSC_hg19_v1_chr2_+_170662051 M20328 M35261	-371652	+	AF369908 AF391554 AF391555 AF391556 AF391557 AF391558 NM_001083615 NM_001171642 NM_138995 BC136620 BC144307	889	+	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	538062	+	TSC_hg19_v1_chr2_+_171571942 AB464708	538181	+	NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##M20328|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M35261|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##AF369908|MYO3B|140469|myosin IIIB##AF391554|MYO3B|140469|myosin IIIB##AF391555|MYO3B|140469|myosin IIIB##AF391556|MYO3B|140469|myosin IIIB##AF391557|MYO3B|140469|myosin IIIB##AF391558|MYO3B|140469|myosin IIIB##NM_001083615|MYO3B|140469|myosin IIIB##NM_001171642|MYO3B|140469|myosin IIIB##NM_138995|MYO3B|140469|myosin IIIB##BC136620|MYO3B|140469|myosin IIIB##BC144307|MYO3B|140469|myosin IIIB##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor	0.999067	0.0	
chr8	120875387	120875501	reg1008186.p1	5.790	+	DQ891267 DQ894455 TSC_hg19_v1_chr8_-_120868155 AK315356 AK074355 BC001531 AY358866 AK054585 BC001316 NM_024094	-7330	-	BC035673 AF026445 BC047732 TSC_hg19_v1_chr8_-_120845082 BC064830 NM_003184 AK316592	-30367	-	EU131011 DQ891628 DQ894819 D45421 L35594 AK315253 BC034961 TSC_hg19_v1_chr8_-_120651080 NM_001040092 NM_001130863 NM_006209	-224382	-	NM_022783 TSC_hg19_v1_chr8_+_120885965 AK315175 AK225168 AK297822 AL136678 AK225675 BC024746 AK022490 BC012040 AM392576 AM393333 AB527130 AK023916	10560	+	TSC_hg19_v1_chr8_+_121137341 NM_021110 Y11709 AK293080 AK307716 AK311498	261911	+	CU692406 DQ893117 DQ893487 DQ896395 AK307322 TSC_hg19_v1_chr8_-_121457370 AB049640 AF112214 BC009190	581911	-	DQ891267|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ894455|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK315356|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK074355|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001531|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AY358866|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK054585|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001316|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##NM_024094|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC035673|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##AF026445|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##BC047732|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##BC064830|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##NM_003184|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##AK316592|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##EU131011|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##DQ891628|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##DQ894819|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##D45421|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##L35594|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##AK315253|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##BC034961|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##NM_001040092|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##NM_001130863|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##NM_006209|ENPP2|5168|ectonucleotide pyrophosphatase/phosphodiesterase 2##NM_022783|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK315175|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225168|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK297822|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AL136678|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225675|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC024746|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK022490|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC012040|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM392576|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM393333|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK023916|DEPTOR|64798|DEP domain containing MTOR-interacting protein##NM_021110|COL14A1|7373|collagen, type XIV, alpha 1##Y11709|COL14A1|7373|collagen, type XIV, alpha 1##AK293080|COL14A1|7373|collagen, type XIV, alpha 1##AK307716|COL14A1|7373|collagen, type XIV, alpha 1##AK311498|COL14A1|7373|collagen, type XIV, alpha 1##DQ893117|MRPL13|28998|mitochondrial ribosomal protein L13##DQ893487|MRPL13|28998|mitochondrial ribosomal protein L13##DQ896395|MRPL13|28998|mitochondrial ribosomal protein L13##AK307322|MRPL13|28998|mitochondrial ribosomal protein L13##AB049640|MRPL13|28998|mitochondrial ribosomal protein L13##AF112214|MRPL13|28998|mitochondrial ribosomal protein L13##BC009190|MRPL13|28998|mitochondrial ribosomal protein L13	0.013601	0.96498	CTCF.p2:-25:0.965
chr14	92378093	92378201	reg1006421.p2	5.789	+	AK093876 AX748346 NM_001128596 TSC_hg19_v1_chr14_-_92333881	-44279	-	TSC_hg19_v1_chr14_-_92302762 BC040503 BX647828 AK126359 NM_001128595 NM_152332	-75355	-	BC126214 BC126216 AK126034 NM_024764	-179750	-	AF112152 AF093118 BX248290 BC022280 TSC_hg19_v1_chr14_-_92413757 AK075147	35627	-	TSC_hg19_v1_chr14_-_92414010 AY358898 NM_006329	35877	-	BC146845 AF007217 BC002656 BC069008 TSC_hg19_v1_chr14_-_92506382 Y12490 BC142956 AK307489 NM_004239	128203	-	AK093876|TC2N|123036|tandem C2 domains, nuclear##NM_001128596|TC2N|123036|tandem C2 domains, nuclear##BC040503|TC2N|123036|tandem C2 domains, nuclear##BX647828|TC2N|123036|tandem C2 domains, nuclear##AK126359|TC2N|123036|tandem C2 domains, nuclear##NM_001128595|TC2N|123036|tandem C2 domains, nuclear##NM_152332|TC2N|123036|tandem C2 domains, nuclear##BC126214|CATSPERB|79820|cation channel, sperm-associated, beta##BC126216|CATSPERB|79820|cation channel, sperm-associated, beta##AK126034|CATSPERB|79820|cation channel, sperm-associated, beta##NM_024764|CATSPERB|79820|cation channel, sperm-associated, beta##AF112152|FBLN5|10516|fibulin 5##AF093118|FBLN5|10516|fibulin 5##BX248290|FBLN5|10516|fibulin 5##BC022280|FBLN5|10516|fibulin 5##AK075147|FBLN5|10516|fibulin 5##AY358898|FBLN5|10516|fibulin 5##NM_006329|FBLN5|10516|fibulin 5##BC146845|TRIP11|9321|thyroid hormone receptor interactor 11##AF007217|TRIP11|9321|thyroid hormone receptor interactor 11##BC002656|TRIP11|9321|thyroid hormone receptor interactor 11##BC069008|TRIP11|9321|thyroid hormone receptor interactor 11##Y12490|TRIP11|9321|thyroid hormone receptor interactor 11##AK307489|TRIP11|9321|thyroid hormone receptor interactor 11##NM_004239|TRIP11|9321|thyroid hormone receptor interactor 11	0.998066	0.0	denovo_WM_7:7:0.814
chr16	10906808	10906946	reg1002992.p2	5.789	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-69173	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-118112	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-232387	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	5671	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	64235	+	BC071683 TSC_hg19_v1_chr16_-_11036171	129289	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.683094	0.0	
chr21	36417441	36417572	reg1008083.p1	5.789	+	TSC_hg19_v1_chr21_-_36260987 BC050363 X79549 D43967 D43968 NM_001001890 NM_001122607	-156525	-	L34598 D10570 TSC_hg19_v1_chr21_-_36260304	-157309	-	AF312386 AF312387 AY004251 TSC_hg19_v1_chr21_-_36259416 S60998	-158094	-	AB384992 AF419247 U19601 BC110828 TSC_hg19_v1_chr21_-_36421376 AK226159	3780	-	BC136380 BC136381 BC144053 TSC_hg19_v1_chr21_-_36421490	3972	-	TSC_hg19_v1_chr21_-_36421575 X90979	4061	-	BC050363|RUNX1|861|runt-related transcription factor 1##X79549|RUNX1|861|runt-related transcription factor 1##D43967|RUNX1|861|runt-related transcription factor 1##D43968|RUNX1|861|runt-related transcription factor 1##NM_001001890|RUNX1|861|runt-related transcription factor 1##NM_001122607|RUNX1|861|runt-related transcription factor 1##L34598|RUNX1|861|runt-related transcription factor 1##D10570|RUNX1|861|runt-related transcription factor 1##S60998|RUNX1|861|runt-related transcription factor 1##U19601|RUNX1|861|runt-related transcription factor 1##BC110828|RUNX1|861|runt-related transcription factor 1##AK226159|RUNX1|861|runt-related transcription factor 1##BC136380|RUNX1|861|runt-related transcription factor 1##BC136381|RUNX1|861|runt-related transcription factor 1##BC144053|RUNX1|861|runt-related transcription factor 1##X90979|RUNX1|861|runt-related transcription factor 1	0.139375	0.0	
chr8	145002716	145002856	reg1004202.p2	5.789	+	AB051895 NM_031308	-55353	-	TSC_hg19_v1_chr8_-_144923180 BC071605 AK293943 NM_178564	-79627	-	TSC_hg19_v1_chr8_-_144911540 AF114818 AK292373 NM_014281 NM_078480	-91236	-	AF330791 TSC_hg19_v1_chr8_-_145013766 AY480051 NM_201384	10917	-	AY480050 NM_201383 TSC_hg19_v1_chr8_-_145016793	13975	-	AF330792 AY480049 TSC_hg19_v1_chr8_-_145018117 NM_201382	15318	-	AB051895|EPPK1|83481|epiplakin 1##NM_031308|EPPK1|83481|epiplakin 1##BC071605|NRBP2|340371|nuclear receptor binding protein 2##AK293943|NRBP2|340371|nuclear receptor binding protein 2##NM_178564|NRBP2|340371|nuclear receptor binding protein 2##AF114818|PUF60|22827|poly-U binding splicing factor 60KDa##AK292373|PUF60|22827|poly-U binding splicing factor 60KDa##NM_014281|PUF60|22827|poly-U binding splicing factor 60KDa##NM_078480|PUF60|22827|poly-U binding splicing factor 60KDa##AY480051|PLEC|5339|plectin##NM_201384|PLEC|5339|plectin##AY480050|PLEC|5339|plectin##NM_201383|PLEC|5339|plectin##AF330792|PLEC|5339|plectin##AY480049|PLEC|5339|plectin##NM_201382|PLEC|5339|plectin	0.0	0.0	
chr12	102878383	102878522	reg1006710.p3	5.788	+	AB209184 NM_000618 NM_001111283 NM_001111285 TSC_hg19_v1_chr12_-_102874389	-4070	-	M11568 TSC_hg19_v1_chr12_-_102874344	-4110	-	AK312231 X57025 TSC_hg19_v1_chr12_-_102874323	-4130	-	TSC_hg19_v1_chr12_-_103310998 CU693178 AK298419 AK313383	432514	-	TSC_hg19_v1_chr12_-_103311062 BC026251	432611	-	L47726 NM_000277 U49897	432928	-	AB209184|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_000618|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111283|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111285|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##M11568|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK312231|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X57025|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK298419|PAH|5053|phenylalanine hydroxylase##AK313383|PAH|5053|phenylalanine hydroxylase##BC026251|PAH|5053|phenylalanine hydroxylase##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase	0.0	0.9036	CTCF.p2:-6:0.904
chr4	10724654	10724778	reg1007199.p1	5.788	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-38315	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-265706	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-606180	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	705816	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2761235	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2761259	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.987907	0.0	denovo_WM_7:-41:0.988
chr4	33804425	33804591	reg1008022.p2	5.788	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-3082049	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-3082314	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-3082509	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	2441529	-	AK131492 NM_001136536 AK304357 AK316523	2478738	+	BC157885 NM_001170700	2481135	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.998654	0.0	denovo_WM_7:25:0.457	denovo_WM_7:26:0.457
chr8	12500160	12500262	reg1007373.p1	5.788	+	BC085016 TSC_hg19_v1_chr8_-_12293910 AK291001 AK298940	-206307	-	AK309984 NM_001137610 AK098138 AK308513 TSC_hg19_v1_chr8_-_12293868 AK297741 AK308439	-206368	-	DQ012022 NM_001037804 NM_001195257	-324387	-	TSC_hg19_v1_chr8_-_12612974 NM_152271	112793	-	AK296010 NM_020844	302955	+	AB040889 NM_001099677	369561	+	BC085016|FAM86B1|85002|family with sequence similarity 86, member B1##AK291001|FAM86B2|653333|family with sequence similarity 86, member B2##AK298940|FAM86B2|653333|family with sequence similarity 86, member B2##AK309984|FAM86B2|653333|family with sequence similarity 86, member B2##NM_001137610|FAM86B2|653333|family with sequence similarity 86, member B2##AK098138|FAM86B1|85002|family with sequence similarity 86, member B1##AK308513|FAM86B1|85002|family with sequence similarity 86, member B1##AK297741|FAM86B2|653333|family with sequence similarity 86, member B2##AK308439|FAM86B1|85002|family with sequence similarity 86, member B1##DQ012022|DEFB130|245940|defensin, beta 130##NM_001037804|DEFB130|245940|defensin, beta 130##NM_001195257|LOC100133267|100133267|defensin, beta 130-like##NM_152271|LONRF1|91694|LON peptidase N-terminal domain and ring finger 1##AK296010|KIAA1456|57604|KIAA1456##NM_020844|KIAA1456|57604|KIAA1456##AB040889|KIAA1456|57604|KIAA1456##NM_001099677|KIAA1456|57604|KIAA1456	1.989642	0.0	denovo_WM_7:41:0.358	denovo_WM_7:42:0.271	denovo_WM_7:58:0.279	denovo_WM_7:59:0.366
chr17	56024452	56024609	reg1007031.p3	5.787	+	AK000746 NM_017949	-43781	-	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	-97126	-	AK093888 AX748353 NM_170721	-690157	+	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	8146	-	TSC_hg19_v1_chr17_+_56065413 AB593183	40944	+	AB464342 D28118 TSC_hg19_v1_chr17_-_56065593	41004	-	AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC056882|CUEDC1|404093|CUE domain containing 1##D28118|VEZF1|7716|vascular endothelial zinc finger 1	0.992565	0.0	denovo_WM_7:-11:0.305	denovo_WM_7:-12:0.305	denovo_WM_7:-13:0.305
chr19	2092748	2092840	reg1003724.p1	5.787	+	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	-7551	-	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-41561	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-46553	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	3471	-	TSC_hg19_v1_chr19_-_2096297 AL832474	3500	-	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	4066	+	AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4	0.996345	0.0	
chr19	28047787	28047855	reg1004474.p1	5.787	+	TSC_hg19_v1_chr19_+_24269988 AF054180 NM_203282 BC056243 AK291286 BC043147 BC139749	-3777852	+	TSC_hg19_v1_chr19_+_24216256 AK092150 AK092080 AK303431	-3831565	+	TSC_hg19_v1_chr19_+_24097711 NM_001244038 AX721133 BC046415 AB593087	-3950127	+	TSC_hg19_v1_chr19_+_28284377 BC024732	236567	+	TSC_hg19_v1_chr19_-_28284831 AK311452	237012	-	TSC_hg19_v1_chr19_+_28284946 AK095009	237107	+	AF054180|ZNF254|9534|zinc finger protein 254##NM_203282|ZNF254|9534|zinc finger protein 254##BC056243|ZNF254|9534|zinc finger protein 254##AK291286|ZNF254|9534|zinc finger protein 254##BC043147|ZNF254|9534|zinc finger protein 254##BC139749|ZNF254|9534|zinc finger protein 254##AK303431|ZNF254|9534|zinc finger protein 254##NM_001244038|ZNF726|730087|zinc finger protein 726##BC046415|ZNF726|730087|zinc finger protein 726##AK311452|LOC148189|148189|uncharacterized LOC148189	0.0	0.0	
chr3	13054373	13054493	reg1008341.p2	5.787	+	AY653734 NM_014869 TSC_hg19_v1_chr3_-_13009192	-45325	-	TSC_hg19_v1_chr3_-_12941548 BC008088 AF055004	-112825	-	BC011514 BC070209 X03342 D28385 AK311909 TSC_hg19_v1_chr3_-_12883042 NM_000994 NM_001007073	-171390	-	TSC_hg19_v1_chr3_-_13057189 BC071805	2785	-	TSC_hg19_v1_chr3_-_13114618 AK294525 NM_001134382	60165	-	AB020713 TSC_hg19_v1_chr3_-_13384784	330332	-	AY653734|IQSEC1|9922|IQ motif and Sec7 domain 1##NM_014869|IQSEC1|9922|IQ motif and Sec7 domain 1##BC008088|IQSEC1|9922|IQ motif and Sec7 domain 1##AF055004|IQSEC1|9922|IQ motif and Sec7 domain 1##BC011514|RPL32|6161|ribosomal protein L32##BC070209|RPL32|6161|ribosomal protein L32##X03342|RPL32|6161|ribosomal protein L32##D28385|RPL32|6161|ribosomal protein L32##AK311909|RPL32|6161|ribosomal protein L32##NM_000994|RPL32|6161|ribosomal protein L32##NM_001007073|RPL32|6161|ribosomal protein L32##AK294525|IQSEC1|9922|IQ motif and Sec7 domain 1##NM_001134382|IQSEC1|9922|IQ motif and Sec7 domain 1##AB020713|NUP210|23225|nucleoporin 210kDa	0.998499	0.0	denovo_WM_7:39:0.457	denovo_WM_7:40:0.457
chr16	75002687	75002804	reg1007076.p1	5.786	+	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	-194021	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	-194160	-	BC028141 AK091708 AX747141 NM_001142497 NM_152649	-268008	-	CU678744 TSC_hg19_v1_chr16_-_75018978 BC004519	16214	-	TSC_hg19_v1_chr16_-_75019011 NM_030581	16280	-	TSC_hg19_v1_chr16_+_75032911 NM_032268	30149	+	BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##BC004519|WDR59|79726|WD repeat domain 59##NM_030581|WDR59|79726|WD repeat domain 59##NM_032268|ZNRF1|84937|zinc and ring finger 1	1.60715	0.0	denovo_WM_7:-45:0.849	denovo_WM_7:-105:0.649
chr13	98919286	98919431	reg1006302.p1	5.785	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-89853	-	TSC_hg19_v1_chr13_+_98795717 AB008430 BC065020	-123640	+	TSC_hg19_v1_chr13_+_98795470 BC041595	-123872	+	TSC_hg19_v1_chr13_+_99058147 AF339817	138848	+	AF083420 NM_003576	254937	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	309696	-	EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##AB008430|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC065020|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC041595|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24	0.998675	0.0	
chr3	113775491	113775619	reg1006118.p1	5.785	+	AK125304 AK295855 AK302488 BC150592 AF509494 NM_020817	-144	-	TSC_hg19_v1_chr3_+_113666756 BC035230 NM_173570 AK127996 AK127025	-108828	+	AK304142 NM_001172105 AY358725 AK292964	-159196	+	TSC_hg19_v1_chr3_+_113775628 AK299313 BC039265 NM_024638 AL833709 AK296938	51	+	TSC_hg19_v1_chr3_+_113775661 AK023022	119	+	AY228457 AY228458 NM_000796 NM_033663 AY228454	122361	-	AK125304|KIAA1407|57577|KIAA1407##AK295855|KIAA1407|57577|KIAA1407##AK302488|KIAA1407|57577|KIAA1407##BC150592|KIAA1407|57577|KIAA1407##AF509494|KIAA1407|57577|KIAA1407##NM_020817|KIAA1407|57577|KIAA1407##BC035230|ZDHHC23|254887|zinc finger, DHHC-type containing 23##NM_173570|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK127996|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK127025|ZDHHC23|254887|zinc finger, DHHC-type containing 23##AK304142|GRAMD1C|54762|GRAM domain containing 1C##NM_001172105|GRAMD1C|54762|GRAM domain containing 1C##AY358725|GRAMD1C|54762|GRAM domain containing 1C##AK292964|GRAMD1C|54762|GRAM domain containing 1C##AK299313|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##BC039265|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##NM_024638|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AL833709|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK296938|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK023022|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AY228457|DRD3|1814|dopamine receptor D3##AY228458|DRD3|1814|dopamine receptor D3##NM_000796|DRD3|1814|dopamine receptor D3##NM_033663|DRD3|1814|dopamine receptor D3##AY228454|DRD3|1814|dopamine receptor D3	0.0	0.0	
chr5	140710117	140710297	reg1000987.p2	5.785	+	TSC_hg19_v1_chr5_-_140700346 NM_005642	-9855	-	U18062 TSC_hg19_v1_chr5_-_140700329 BC032737 X97999 BC022798 BC013397 AK314837	-9898	-	AF332005 BC069458 BC100935 BC100936 BC100937 AY208943 AF378119 NM_031947	-26686	-	BC112082 BC112084 AF152318 AF152507 NM_018912 NM_031993	20	+	NM_018915 NM_032009 BC093871 BC104950 AF152322 AF152508	8238	+	AF152323 AF152509 AF152510 BC115408 BC115409 NM_018916 NM_032011 BC133708	13394	+	NM_005642|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##U18062|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##BC032737|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##X97999|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##BC022798|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##BC013397|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##AK314837|TAF7|6879|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa##AF332005|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC069458|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC100935|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC100936|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC100937|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##AY208943|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##AF378119|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##NM_031947|SLC25A2|83884|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2##BC112082|PCDHGA1|56114|protocadherin gamma subfamily A, 1##BC112084|PCDHGA1|56114|protocadherin gamma subfamily A, 1##AF152318|PCDHGA1|56114|protocadherin gamma subfamily A, 1##AF152507|PCDHGA1|56114|protocadherin gamma subfamily A, 1##NM_018912|PCDHGA1|56114|protocadherin gamma subfamily A, 1##NM_031993|PCDHGA1|56114|protocadherin gamma subfamily A, 1##NM_018915|PCDHGA2|56113|protocadherin gamma subfamily A, 2##NM_032009|PCDHGA2|56113|protocadherin gamma subfamily A, 2##BC093871|PCDHGA2|56113|protocadherin gamma subfamily A, 2##BC104950|PCDHGA2|56113|protocadherin gamma subfamily A, 2##AF152322|PCDHGA2|56113|protocadherin gamma subfamily A, 2##AF152508|PCDHGA2|56113|protocadherin gamma subfamily A, 2##AF152323|PCDHGA3|56112|protocadherin gamma subfamily A, 3##AF152509|PCDHGA3|56112|protocadherin gamma subfamily A, 3##AF152510|PCDHGA3|56112|protocadherin gamma subfamily A, 3##BC115408|PCDHGA3|56112|protocadherin gamma subfamily A, 3##BC115409|PCDHGA3|56112|protocadherin gamma subfamily A, 3##NM_018916|PCDHGA3|56112|protocadherin gamma subfamily A, 3##NM_032011|PCDHGA3|56112|protocadherin gamma subfamily A, 3##BC133708|PCDHGA3|56112|protocadherin gamma subfamily A, 3	0.0	0.0	
chr7	1191334	1191468	reg1005370.p1	5.785	+	TSC_hg19_v1_chr7_-_1177884 AF495721 BC006224 NM_001134395 NM_001134396 NM_032350	-13539	-	NM_001098201 AK289588 U63917 BC067849	-63648	+	NM_001039966 NM_001505 AF015257	-64925	+	BC016963 TSC_hg19_v1_chr7_-_1199799 AK027118 BC029558	8397	-	AK290170 TSC_hg19_v1_chr7_-_1199815	8413	-	TSC_hg19_v1_chr7_-_1199853 NM_182491	8438	-	AF495721|C7orf50|84310|chromosome 7 open reading frame 50##BC006224|C7orf50|84310|chromosome 7 open reading frame 50##NM_001134395|C7orf50|84310|chromosome 7 open reading frame 50##NM_001134396|C7orf50|84310|chromosome 7 open reading frame 50##NM_032350|C7orf50|84310|chromosome 7 open reading frame 50##NM_001098201|GPER|2852|G protein-coupled estrogen receptor 1##AK289588|GPER|2852|G protein-coupled estrogen receptor 1##U63917|GPER|2852|G protein-coupled estrogen receptor 1##BC067849|GPER|2852|G protein-coupled estrogen receptor 1##NM_001039966|GPER|2852|G protein-coupled estrogen receptor 1##NM_001505|GPER|2852|G protein-coupled estrogen receptor 1##AF015257|GPER|2852|G protein-coupled estrogen receptor 1##BC016963|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK027118|ZFAND2A|90637|zinc finger, AN1-type domain 2A##BC029558|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK290170|ZFAND2A|90637|zinc finger, AN1-type domain 2A##NM_182491|ZFAND2A|90637|zinc finger, AN1-type domain 2A	0.952224	0.0	denovo_WM_7:4:0.212	denovo_WM_7:7:0.325
chr7	73619876	73620031	reg1008489.p2	5.785	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	-31250	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	-31312	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-112436	+	NM_014146 NM_032463 NM_032464	4133	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	4329	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	4383	+	AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2	0.994629	0.0	
chr1	38391943	38392054	reg1006785.p2	5.784	+	TSC_hg19_v1_chr1_-_38325265 X78710 AK225923 AK298751 AK309584 AK314233 BC014454 NM_005955	-66740	-	AY517499 TSC_hg19_v1_chr1_+_38273967 BC107856 BC057819 AK127381 BC102041 BC127187 BC127188 BC141938	-118088	+	TSC_hg19_v1_chr1_-_38273855 AY172561 NM_024640 BC080186	-118127	-	TSC_hg19_v1_chr1_-_38397424 AK022846	5437	-	TSC_hg19_v1_chr1_-_38412689 AL833055 BC058932	20684	-	TSC_hg19_v1_chr1_-_38412717 BC062317 AK310824	20713	-	X78710|MTF1|4520|metal-regulatory transcription factor 1##AK225923|MTF1|4520|metal-regulatory transcription factor 1##AK298751|MTF1|4520|metal-regulatory transcription factor 1##AK309584|MTF1|4520|metal-regulatory transcription factor 1##AK314233|MTF1|4520|metal-regulatory transcription factor 1##BC014454|MTF1|4520|metal-regulatory transcription factor 1##NM_005955|MTF1|4520|metal-regulatory transcription factor 1##AY517499|C1orf122|127687|chromosome 1 open reading frame 122##BC107856|C1orf122|127687|chromosome 1 open reading frame 122##BC057819|C1orf122|127687|chromosome 1 open reading frame 122##AK127381|C1orf122|127687|chromosome 1 open reading frame 122##BC102041|C1orf122|127687|chromosome 1 open reading frame 122##BC127187|C1orf122|127687|chromosome 1 open reading frame 122##BC127188|C1orf122|127687|chromosome 1 open reading frame 122##AY172561|YRDC|79693|yrdC domain containing (E. coli)##NM_024640|YRDC|79693|yrdC domain containing (E. coli)##BC080186|YRDC|79693|yrdC domain containing (E. coli)##AK022846|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##AL833055|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC058932|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC062317|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##AK310824|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa	0.98984	0.0	denovo_WM_7:-23:0.629	denovo_WM_7:-24:0.361
chr19	18519231	18519395	reg1005925.p2	5.784	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	-10893	-	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	-22331	+	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	-67906	+	TSC_hg19_v1_chr19_+_18530163 NM_001009998 NM_032627	10814	+	TSC_hg19_v1_chr19_+_18530224 BC000274 AK098429	10912	+	TSC_hg19_v1_chr19_+_18530425 CU674122 AB464208	11127	+	BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##NM_001009998|SSBP4|170463|single stranded DNA binding protein 4##NM_032627|SSBP4|170463|single stranded DNA binding protein 4##BC000274|SSBP4|170463|single stranded DNA binding protein 4##AK098429|SSBP4|170463|single stranded DNA binding protein 4	0.997495	0.0	denovo_WM_7:0:0.884
chr14	64214825	64214943	reg1005503.p2	5.782	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-20135	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-106322	-	BX248008 NM_001008726	-106760	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	104811	+	NM_182913 AY061758 AK297874	465993	+	NM_182910	467787	+	AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	1.551491	0.0	
chr2	38981818	38981968	reg1008911.p2	5.782	+	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	-3377	-	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-88638	+	NM_138801 TSC_hg19_v1_chr2_+_38893054	-88841	+	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	23462	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	121135	-	AY367766 NM_001145450 TSC_hg19_v1_chr2_+_39103127 BC102032 BC102034 BC102035	121260	+	AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AY367766|MORN2|729967|MORN repeat containing 2##NM_001145450|MORN2|729967|MORN repeat containing 2##BC102032|MORN2|729967|MORN repeat containing 2##BC102034|MORN2|729967|MORN repeat containing 2##BC102035|MORN2|729967|MORN repeat containing 2	0.917231	0.0	denovo_WM_7:60:0.396	denovo_WM_7:61:0.252
chr3	15201438	15201609	reg1007868.p2	5.782	+	TSC_hg19_v1_chr3_-_15140655 AK291288 AK301735 AL833545 NM_022340	-60870	-	TSC_hg19_v1_chr3_-_15140649 BC032628	-60874	-	AB209673 TSC_hg19_v1_chr3_-_15140645	-60889	-	TSC_hg19_v1_chr3_+_15247736 NM_014296	46211	+	TSC_hg19_v1_chr3_+_15247768 AB028639 BC056202 AK314253 CU691130	46431	+	BC023195 DQ892875 EU176725 AB005047 AB590534 TSC_hg19_v1_chr3_-_15374053 BC010123	172418	-	AK291288|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AK301735|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AL833545|ZFYVE20|64145|zinc finger, FYVE domain containing 20##NM_022340|ZFYVE20|64145|zinc finger, FYVE domain containing 20##BC032628|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AB209673|ZFYVE20|64145|zinc finger, FYVE domain containing 20##NM_014296|CAPN7|23473|calpain 7##AB028639|CAPN7|23473|calpain 7##BC056202|CAPN7|23473|calpain 7##AK314253|CAPN7|23473|calpain 7##BC023195|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##DQ892875|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##EU176725|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##AB005047|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)##BC010123|SH3BP5|9467|SH3-domain binding protein 5 (BTK-associated)	1.755138	0.0	denovo_WM_7:-53:0.934	denovo_WM_7:82:0.293	denovo_WM_7:84:0.202
chr4	28075596	28075714	reg1010929.p1	5.782	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-1213115	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-1489975	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-1583670	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	2646344	+	AB006757 TSC_hg19_v1_chr4_+_30722198	2646539	+	TSC_hg19_v1_chr4_+_30722465 AB006756	2646804	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	1.994484	0.0	denovo_WM_7:38:0.799	denovo_WM_7:55:0.440	denovo_WM_7:56:0.464
chr6	34641677	34641819	reg1005147.p1	5.782	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-117652	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-159094	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-207844	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	22798	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	22878	-	NM_003093	83122	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.0	0.0	
chr12	67255074	67255188	reg1007285.p1	5.780	+	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	-182229	-	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	-182375	-	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-558802	+	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	407971	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	408041	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	408299	+	AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1	0.0	0.997817	CTCF.p2:-7:0.998
chr16	16237277	16237414	reg1006243.p2	5.780	+	TSC_hg19_v1_chr16_+_16146613 HQ917065	-90727	+	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	-193981	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-254860	-	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	79975	-	TSC_hg19_v1_chr16_+_16326401 NM_001004067	89052	+	TSC_hg19_v1_chr16_+_16326457 AL832855	89110	+	L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AL832498|FOPNL|123811|FGFR1OP N-terminal like##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001004067|NOMO3|408050|NODAL modulator 3##AL832855|NOMO2|283820|NODAL modulator 2	0.998474	0.0	
chr18	20910316	20910461	reg1008521.p1	5.780	+	BC037218 NM_138375	-174600	+	EF028204 NM_001100619	-194662	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-396573	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	107483	-	AK057292 NM_003831	122398	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	122858	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.0	0.0	
chr2	187056258	187056430	reg1008047.p2	5.780	+	NM_173651	-452990	+	BC136602 TSC_hg19_v1_chr2_+_185463544	-1592852	+	BC142612 TSC_hg19_v1_chr2_+_185463319	-1593039	+	TSC_hg19_v1_chr2_+_187350986 AF220184 NM_018471 AK298615 AK001901 AK297658 AF289586	294586	+	TSC_hg19_v1_chr2_+_187351010 BC012336 AF161421 AF109366	294666	+	TSC_hg19_v1_chr2_+_187351051 BC021102 EU176353 AB587394 CU676824	294726	+	NM_173651|FSIP2|401024|fibrous sheath interacting protein 2##BC136602|ZNF804A|91752|zinc finger protein 804A##BC142612|ZNF804A|91752|zinc finger protein 804A##AF220184|ZC3H15|55854|zinc finger CCCH-type containing 15##NM_018471|ZC3H15|55854|zinc finger CCCH-type containing 15##AK298615|ZC3H15|55854|zinc finger CCCH-type containing 15##AK001901|ZC3H15|55854|zinc finger CCCH-type containing 15##AK297658|ZC3H15|55854|zinc finger CCCH-type containing 15##AF289586|ZC3H15|55854|zinc finger CCCH-type containing 15##BC012336|ZC3H15|55854|zinc finger CCCH-type containing 15##AF161421|ZC3H15|55854|zinc finger CCCH-type containing 15##AF109366|ZC3H15|55854|zinc finger CCCH-type containing 15##BC021102|ZC3H15|55854|zinc finger CCCH-type containing 15##EU176353|ZC3H15|55854|zinc finger CCCH-type containing 15	2.380884	0.0	denovo_WM_7:72:0.202	denovo_WM_7:77:0.501	denovo_WM_7:-88:0.233
chr11	9253256	9253399	reg1001307.p1	5.779	+	TSC_hg19_v1_chr11_-_9225783 AK302478	-27506	-	BC111690 AK131552 AK123039 NM_001170690 NM_020974 TSC_hg19_v1_chr11_-_9113185	-140189	-	BC008835 TSC_hg19_v1_chr11_-_9025549 AK024750 AK098694 AK296484 NM_020645	-227764	-	AB029014 TSC_hg19_v1_chr11_-_9286891 BC071596 NM_001243254 NM_015213	33535	-	AK303339 TSC_hg19_v1_chr11_-_9336043 BC064366 BC091524	82732	-	TSC_hg19_v1_chr11_-_9336141 D26067	82811	-	AK302478|DENND5A|23258|DENN/MADD domain containing 5A##BC111690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK131552|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##AK123039|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_001170690|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##NM_020974|SCUBE2|57758|signal peptide, CUB domain, EGF-like 2##BC008835|NRIP3|56675|nuclear receptor interacting protein 3##AK024750|NRIP3|56675|nuclear receptor interacting protein 3##AK098694|NRIP3|56675|nuclear receptor interacting protein 3##AK296484|NRIP3|56675|nuclear receptor interacting protein 3##NM_020645|NRIP3|56675|nuclear receptor interacting protein 3##AB029014|DENND5A|23258|DENN/MADD domain containing 5A##BC071596|DENND5A|23258|DENN/MADD domain containing 5A##NM_001243254|DENND5A|23258|DENN/MADD domain containing 5A##NM_015213|DENND5A|23258|DENN/MADD domain containing 5A##AK303339|TMEM41B|440026|transmembrane protein 41B##BC064366|TMEM41B|440026|transmembrane protein 41B##BC091524|TMEM41B|440026|transmembrane protein 41B##D26067|TMEM41B|440026|transmembrane protein 41B	1.186367	0.0	denovo_WM_7:-54:0.310	denovo_WM_7:-55:0.310	denovo_WM_7:-56:0.310
chr22	26949267	26949440	reg1006927.p2	5.779	+	TSC_hg19_v1_chr22_+_26908507 AK057443	-40860	+	TSC_hg19_v1_chr22_-_26908440 AK025443 AK299964 BC011599 BC033080 AL080147 NM_001008697 NM_012143 AK298303 AL050258	-40960	-	TSC_hg19_v1_chr22_+_26879842 BC066962 AK293916 NM_001013694	-69523	+	AK075139 NM_001008566	11998	-	TSC_hg19_v1_chr22_-_26986052 AF049891 BC017509	36698	-	TSC_hg19_v1_chr22_-_26986070 AK304545 BC001057 AL136623	36714	-	AK025443|TFIP11|24144|tuftelin interacting protein 11##AK299964|TFIP11|24144|tuftelin interacting protein 11##BC011599|TFIP11|24144|tuftelin interacting protein 11##BC033080|TFIP11|24144|tuftelin interacting protein 11##AL080147|TFIP11|24144|tuftelin interacting protein 11##NM_001008697|TFIP11|24144|tuftelin interacting protein 11##NM_012143|TFIP11|24144|tuftelin interacting protein 11##AK298303|TFIP11|24144|tuftelin interacting protein 11##AL050258|TFIP11|24144|tuftelin interacting protein 11##BC066962|SRRD|402055|SRR1 domain containing##AK293916|SRRD|402055|SRR1 domain containing##NM_001013694|SRRD|402055|SRR1 domain containing##AK075139|TPST2|8459|tyrosylprotein sulfotransferase 2##NM_001008566|TPST2|8459|tyrosylprotein sulfotransferase 2##AF049891|TPST2|8459|tyrosylprotein sulfotransferase 2##BC017509|TPST2|8459|tyrosylprotein sulfotransferase 2##AK304545|TPST2|8459|tyrosylprotein sulfotransferase 2##BC001057|TPST2|8459|tyrosylprotein sulfotransferase 2##AL136623|TPST2|8459|tyrosylprotein sulfotransferase 2	0.995936	0.0	denovo_WM_7:-8:0.315	denovo_WM_7:-9:0.315	denovo_WM_7:-10:0.315
chrX	41189569	41189733	reg1007725.p1	5.779	+	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	-244779	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-594522	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-594671	-	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	2999	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	3806	+	AK304661 TSC_hg19_v1_chrX_+_41193866 AK127902	4214	+	NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304661|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK127902|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	0.999707	0.0	denovo_WM_7:9:0.721
chr1	152432606	152432786	reg1008035.p2	5.778	+	AF077831 AK291301 AK298640 AK316568 BC030807 NM_016190	-45958	-	AY827490 NM_001014342	-100215	-	L01090 NM_002016	-135018	-	NM_178438	50623	+	AJ243662 NM_019060	54281	+	BC131716 NM_178435	106541	-	AF077831|CRNN|49860|cornulin##AK291301|CRNN|49860|cornulin##AK298640|CRNN|49860|cornulin##AK316568|CRNN|49860|cornulin##BC030807|CRNN|49860|cornulin##NM_016190|CRNN|49860|cornulin##AY827490|FLG2|388698|filaggrin family member 2##NM_001014342|FLG2|388698|filaggrin family member 2##L01090|FLG|2312|filaggrin##NM_002016|FLG|2312|filaggrin##NM_178438|LCE5A|254910|late cornified envelope 5A##AJ243662|CRCT1|54544|cysteine-rich C-terminal 1##NM_019060|CRCT1|54544|cysteine-rich C-terminal 1##BC131716|LCE3E|353145|late cornified envelope 3E##NM_178435|LCE3E|353145|late cornified envelope 3E	0.916785	0.0	denovo_WM_7:-48:0.365	denovo_WM_7:-49:0.552
chr12	121497534	121497662	reg1008514.p1	5.778	+	TSC_hg19_v1_chr12_-_121476781 HQ258301 AJ225089 AK314419 NM_003733 NM_198213 AK023956 BC117408 BC117410	-20815	-	TSC_hg19_v1_chr12_-_121454291 AK222630 AK299170 AK301566 AK022510 AK225162 NM_022895 AK307971	-43304	-	TSC_hg19_v1_chr12_-_121454230 BC014661	-43354	-	NM_002562 TSC_hg19_v1_chr12_+_121570744 AK294126 AK290405 AK296432 BC011913 BC121157 BC121158 AB209709 BC007679 AK090866 AK225163 AX746656 Y09561 GQ180122 DQ893457 DQ896337 AB590390 CU680114 AY847298 AY847299 AY847300 AY847301 AY847302 AY847303 AY847304 DQ399293	73103	+	U83993 NM_002560	150063	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	150294	+	HQ258301|OASL|8638|2'-5'-oligoadenylate synthetase-like##AJ225089|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK314419|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_003733|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_198213|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK023956|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117408|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117410|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK222630|C12orf43|64897|chromosome 12 open reading frame 43##AK299170|C12orf43|64897|chromosome 12 open reading frame 43##AK301566|C12orf43|64897|chromosome 12 open reading frame 43##AK022510|C12orf43|64897|chromosome 12 open reading frame 43##AK225162|C12orf43|64897|chromosome 12 open reading frame 43##NM_022895|C12orf43|64897|chromosome 12 open reading frame 43##AK307971|C12orf43|64897|chromosome 12 open reading frame 43##BC014661|C12orf43|64897|chromosome 12 open reading frame 43##NM_002562|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK294126|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK290405|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK296432|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC011913|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121157|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121158|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AB209709|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC007679|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK090866|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK225163|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##Y09561|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##GQ180122|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ893457|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ896337|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847298|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847299|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847300|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847301|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847302|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847303|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847304|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ399293|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4	0.994603	0.0	denovo_WM_7:29:0.309	denovo_WM_7:30:0.309	denovo_WM_7:31:0.309
chr19	1939340	1939469	reg1006026.p1	5.778	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	-33999	+	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	-34052	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-53900	-	TSC_hg19_v1_chr19_+_1941164 NM_001319	1759	+	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	1784	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	76266	-	AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2	0.992358	0.0	denovo_WM_7:41:0.496	denovo_WM_7:42:0.496
chr4	37687140	37687262	reg1007473.p2	5.778	+	AK001879 NM_018302 AK225192	-101332	+	NM_001104629 BC037906	-231626	+	NM_001144990	-440512	+	TSC_hg19_v1_chr4_-_37687999 BC039540 AK075468 NM_001085399 NM_001085400	772	-	TSC_hg19_v1_chr4_+_37828307 NM_018290 AL136705 AK310927	141099	+	TSC_hg19_v1_chr4_+_37828339 AK223237 AK303374 AF109360 BC010087 AK001845 AK297752 CR457274 CU679607	141142	+	AK001879|C4orf19|55286|chromosome 4 open reading frame 19##NM_018302|C4orf19|55286|chromosome 4 open reading frame 19##AK225192|C4orf19|55286|chromosome 4 open reading frame 19##NM_001104629|C4orf19|55286|chromosome 4 open reading frame 19##BC037906|C4orf19|55286|chromosome 4 open reading frame 19##NM_001144990|KIAA1239|57495|KIAA1239##BC039540|RELL1|768211|RELT-like 1##AK075468|RELL1|768211|RELT-like 1##NM_001085399|RELL1|768211|RELT-like 1##NM_001085400|RELL1|768211|RELT-like 1##NM_018290|PGM2|55276|phosphoglucomutase 2##AL136705|PGM2|55276|phosphoglucomutase 2##AK310927|PGM2|55276|phosphoglucomutase 2##AK223237|PGM2|55276|phosphoglucomutase 2##AK303374|PGM2|55276|phosphoglucomutase 2##AF109360|PGM2|55276|phosphoglucomutase 2##BC010087|PGM2|55276|phosphoglucomutase 2##AK001845|PGM2|55276|phosphoglucomutase 2##AK297752|PGM2|55276|phosphoglucomutase 2##CR457274|PGM2|55276|phosphoglucomutase 2	0.90173	0.0	denovo_WM_7:7:0.875
chr16	4715311	4715415	reg1006224.p1	5.777	+	BC014199 TSC_hg19_v1_chr16_+_4714741	-565	+	AB383902 CU690664 EF471397 EF471398 TSC_hg19_v1_chr16_+_4675003	-40375	+	TSC_hg19_v1_chr16_+_4674861 AK299052 BC050389 AB011116	-40501	+	AK315456 NM_001193452 NM_032349 TSC_hg19_v1_chr16_+_4743697	28336	+	TSC_hg19_v1_chr16_+_4743721 BC006223 AK092642 AX747647 CU675299	28355	+	TSC_hg19_v1_chr16_-_4784249 AK123496 NM_133450 BC031350 BC050387 AK123371 AK301683 NM_001242929	68902	-	BC014199|MGRN1|23295|mahogunin, ring finger 1##EF471397|MGRN1|23295|mahogunin, ring finger 1##EF471398|MGRN1|23295|mahogunin, ring finger 1##AK299052|MGRN1|23295|mahogunin, ring finger 1##BC050389|MGRN1|23295|mahogunin, ring finger 1##AB011116|MGRN1|23295|mahogunin, ring finger 1##AK315456|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##NM_001193452|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##NM_032349|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##BC006223|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##AK092642|NUDT16L1|84309|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1##AK123496|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##NM_133450|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##BC031350|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##BC050387|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##AK123371|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##AK301683|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3##NM_001242929|ANKS3|124401|ankyrin repeat and sterile alpha motif domain containing 3	0.992202	0.0	denovo_WM_7:8:0.736
chr2	143623652	143623830	reg1008020.p1	5.777	+	AF176832 NM_018557	-734472	-	TSC_hg19_v1_chr2_-_142888540 AK054663	-735185	-	AF043467 AB162675 BC101461 BC101462 BC101463 BC104741 NM_007226	-4085935	-	NM_001032998 NM_001199241 NM_003937 AK223426 TSC_hg19_v1_chr2_+_143635213 U57721	11465	+	BC000879 TSC_hg19_v1_chr2_+_143635232 AK292095 AK315343 AK290900	11499	+	NM_018460 BC029346 TSC_hg19_v1_chr2_+_143886947 AK308219 AF212222 AF217507 AF217522 AY219338 AK226014	263189	+	AF176832|LRP1B|53353|low density lipoprotein receptor-related protein 1B##NM_018557|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AK054663|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AF043467|NXPH2|11249|neurexophilin 2##AB162675|NXPH2|11249|neurexophilin 2##BC101461|NXPH2|11249|neurexophilin 2##BC101462|NXPH2|11249|neurexophilin 2##BC101463|NXPH2|11249|neurexophilin 2##BC104741|NXPH2|11249|neurexophilin 2##NM_007226|NXPH2|11249|neurexophilin 2##NM_001032998|KYNU|8942|kynureninase##NM_001199241|KYNU|8942|kynureninase##NM_003937|KYNU|8942|kynureninase##AK223426|KYNU|8942|kynureninase##U57721|KYNU|8942|kynureninase##BC000879|KYNU|8942|kynureninase##AK292095|KYNU|8942|kynureninase##AK315343|KYNU|8942|kynureninase##AK290900|KYNU|8942|kynureninase##NM_018460|ARHGAP15|55843|Rho GTPase activating protein 15##AK308219|ARHGAP15|55843|Rho GTPase activating protein 15##AF212222|ARHGAP15|55843|Rho GTPase activating protein 15##AF217507|ARHGAP15|55843|Rho GTPase activating protein 15##AF217522|ARHGAP15|55843|Rho GTPase activating protein 15##AY219338|ARHGAP15|55843|Rho GTPase activating protein 15##AK226014|ARHGAP15|55843|Rho GTPase activating protein 15	0.978907	0.0	denovo_WM_7:60:0.745
chr7	64365713	64365834	reg1009193.p1	5.777	+	NM_021148 BC007078 BC019234 BC008386 BC063818 BC108740	-2114	+	AK090648 AX746558 TSC_hg19_v1_chr7_+_64342925	-22871	+	TSC_hg19_v1_chr7_+_64254799 NM_001160183 NM_006524 AK294302 AK298230 AK055644 BC141847 BC037426	-110958	+	M55422 NM_015852	85640	-	TSC_hg19_v1_chr7_-_64467066 AK295189 AK097499 NM_001007253	101291	-	TSC_hg19_v1_chr7_+_64498727 BX649060 BC071617	132933	+	NM_021148|ZNF273|10793|zinc finger protein 273##BC007078|ZNF273|10793|zinc finger protein 273##BC019234|ZNF273|10793|zinc finger protein 273##BC008386|ZNF273|10793|zinc finger protein 273##BC063818|ZNF273|10793|zinc finger protein 273##BC108740|ZNF273|10793|zinc finger protein 273##AK090648|ZNF273|10793|zinc finger protein 273##NM_001160183|ZNF138|7697|zinc finger protein 138##NM_006524|ZNF138|7697|zinc finger protein 138##AK294302|ZNF138|7697|zinc finger protein 138##AK298230|ZNF138|7697|zinc finger protein 138##AK055644|ZNF138|7697|zinc finger protein 138##BC141847|ZNF138|7697|zinc finger protein 138##BC037426|ZNF138|7697|zinc finger protein 138##M55422|ZNF117|51351|zinc finger protein 117##NM_015852|ZNF117|51351|zinc finger protein 117##AK295189|ERV3-1|2086|endogenous retrovirus group 3, member 1##NM_001007253|ERV3-1|2086|endogenous retrovirus group 3, member 1##BX649060|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##BC071617|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3	0.999559	0.0	
chr16	10374572	10374684	reg1007017.p2	5.776	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-97951	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-98440	-	BC143273 U09002 NM_001134408	-98795	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	105289	+	NM_024997 BC137079 BC144468	148112	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	299862	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	0.9984	0.0	denovo_WM_7:-1:0.494	denovo_WM_7:-2:0.494
chr17	41150231	41150369	reg1003698.p2	5.776	+	BC014873 TSC_hg19_v1_chr17_+_41132589 AK303115 AL831813 AY189284	-17706	+	AK310125 BC039247 NM_173079 TSC_hg19_v1_chr17_+_41132581	-17719	+	AK295447 NM_001136042 NM_001142653 NM_001142654	-17756	-	TSC_hg19_v1_chr17_+_41150435 AK124148 NM_000988 BC098560 AK311792	131	+	BC002588 TSC_hg19_v1_chr17_+_41150484	180	+	NM_005533 TSC_hg19_v1_chr17_+_41158831 BC001356 AB463796 DQ892598 DQ895826 U72882	8552	+	BC014873|RUNDC1|146923|RUN domain containing 1##AL831813|RUNDC1|146923|RUN domain containing 1##AY189284|RUNDC1|146923|RUN domain containing 1##BC039247|RUNDC1|146923|RUN domain containing 1##NM_173079|RUNDC1|146923|RUN domain containing 1##AK295447|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001136042|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001142653|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001142654|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##AK124148|RPL27|6155|ribosomal protein L27##NM_000988|RPL27|6155|ribosomal protein L27##BC098560|RPL27|6155|ribosomal protein L27##AK311792|RPL27|6155|ribosomal protein L27##BC002588|RPL27|6155|ribosomal protein L27##NM_005533|IFI35|3430|interferon-induced protein 35##BC001356|IFI35|3430|interferon-induced protein 35##DQ892598|IFI35|3430|interferon-induced protein 35##DQ895826|IFI35|3430|interferon-induced protein 35##U72882|IFI35|3430|interferon-induced protein 35	0.0	0.0	
chr21	26558692	26558821	reg1008379.p1	5.776	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-757688	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4187983	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4188066	+	TSC_hg19_v1_chr21_+_26934442 AF402776	375716	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	421059	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	452897	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.996198	0.0	
chr4	87639493	87639654	reg1008432.p2	5.776	+	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-124100	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-265250	-	NM_138980 NM_138982	-358199	-	AJ583502 BC107051 BC107052 EF437223 NM_197965	130768	-	BC016746 BC063410 NM_144645	173987	-	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	216642	+	AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##NM_138980|MAPK10|5602|mitogen-activated protein kinase 10##NM_138982|MAPK10|5602|mitogen-activated protein kinase 10##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1	0.990273	0.0	denovo_WM_7:41:0.491	denovo_WM_7:42:0.286	denovo_WM_7:43:0.214
chr6	96779012	96779168	reg1007447.p1	5.776	+	NM_006581 AK314966 TSC_hg19_v1_chr6_+_96463867 BC001879 BC036101 AB023021	-315223	+	TSC_hg19_v1_chr6_+_96025418 NM_024641 BX640869 AY048774 AY048775 BC146671 BC150199 CR936827 AK291940 BX537398	-753689	+	TSC_hg19_v1_chr6_-_96025325 BC047582	-753801	-	TSC_hg19_v1_chr6_+_96969716 NM_015323 BC015377 AK307651 BC036379 BC028608	190609	+	TSC_hg19_v1_chr6_+_96969734 AB018319 CU690338	190649	+	NM_001170807 NM_020482 AK058175 BC029490 BC021723 AK223539	231379	+	NM_006581|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##AK314966|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##BC036101|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##AB023021|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##NM_024641|MANEA|79694|mannosidase, endo-alpha##BX640869|MANEA|79694|mannosidase, endo-alpha##AY048774|MANEA|79694|mannosidase, endo-alpha##AY048775|MANEA|79694|mannosidase, endo-alpha##BC146671|MANEA|79694|mannosidase, endo-alpha##BC150199|MANEA|79694|mannosidase, endo-alpha##CR936827|MANEA|79694|mannosidase, endo-alpha##AK291940|MANEA|79694|mannosidase, endo-alpha##BX537398|MANEA|79694|mannosidase, endo-alpha##NM_015323|UFL1|23376|UFM1-specific ligase 1##BC015377|UFL1|23376|UFM1-specific ligase 1##AK307651|UFL1|23376|UFM1-specific ligase 1##BC036379|UFL1|23376|UFM1-specific ligase 1##BC028608|UFL1|23376|UFM1-specific ligase 1##AB018319|UFL1|23376|UFM1-specific ligase 1##NM_001170807|FHL5|9457|four and a half LIM domains 5##NM_020482|FHL5|9457|four and a half LIM domains 5##AK058175|FHL5|9457|four and a half LIM domains 5##BC029490|FHL5|9457|four and a half LIM domains 5##BC021723|FHL5|9457|four and a half LIM domains 5##AK223539|FHL5|9457|four and a half LIM domains 5	0.0	0.0	
chr4	159652816	159652929	reg1007568.p1	5.775	+	AB528445 CR542081 DQ891562 DQ894749 TSC_hg19_v1_chr4_-_159644545 BC014893 L11667 BC030707 AK313929 NM_005038	-8344	-	TSC_hg19_v1_chr4_+_159593447 AK314803 NM_004453 BC011890 AK311435 BX538129 AK304838 S69232 EU093082 EU093083	-59478	+	TSC_hg19_v1_chr4_-_159593035 AK027539 BC065017 BC094775 NM_001008393	-59782	-	TSC_hg19_v1_chr4_+_159690177 NM_020840	37306	+	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	37413	+	AK058100 NM_152543	303460	-	CR542081|PPID|5481|peptidylprolyl isomerase D##DQ891562|PPID|5481|peptidylprolyl isomerase D##DQ894749|PPID|5481|peptidylprolyl isomerase D##BC014893|PPID|5481|peptidylprolyl isomerase D##L11667|PPID|5481|peptidylprolyl isomerase D##BC030707|PPID|5481|peptidylprolyl isomerase D##AK313929|PPID|5481|peptidylprolyl isomerase D##NM_005038|PPID|5481|peptidylprolyl isomerase D##AK314803|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##NM_004453|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##BC011890|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##BX538129|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##AK304838|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##S69232|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##EU093082|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##EU093083|ETFDH|2110|electron-transferring-flavoprotein dehydrogenase##AK027539|C4orf46|201725|chromosome 4 open reading frame 46##BC065017|C4orf46|201725|chromosome 4 open reading frame 46##BC094775|C4orf46|201725|chromosome 4 open reading frame 46##NM_001008393|C4orf46|201725|chromosome 4 open reading frame 46##NM_020840|FNIP2|57600|folliculin interacting protein 2##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45	1.925794	0.0	denovo_WM_7:-60:0.952	denovo_WM_7:-75:0.951
chr4	184242462	184242615	reg1008189.p1	5.775	+	NM_001111319	-612	-	TSC_hg19_v1_chr4_+_184020431 NM_024949	-222060	+	TSC_hg19_v1_chr4_-_183838615 NM_001012732 NM_001921	-403904	-	NM_001185149	1040	-	TSC_hg19_v1_chr4_+_184365788 AK000043 NM_017632	123248	+	TSC_hg19_v1_chr4_+_184365846 AF246705 AK096180 BC022270 AK225848 EU446516 CU692522	123331	+	NM_001111319|CLDN22|53842|claudin 22##NM_024949|WWC2|80014|WW and C2 domain containing 2##NM_001012732|DCTD|1635|dCMP deaminase##NM_001921|DCTD|1635|dCMP deaminase##NM_001185149|CLDN24|100132463|claudin 24##AK000043|CDKN2AIP|55602|CDKN2A interacting protein##NM_017632|CDKN2AIP|55602|CDKN2A interacting protein##AF246705|CDKN2AIP|55602|CDKN2A interacting protein##AK096180|CDKN2AIP|55602|CDKN2A interacting protein##BC022270|CDKN2AIP|55602|CDKN2A interacting protein##AK225848|CDKN2AIP|55602|CDKN2A interacting protein##EU446516|CDKN2AIP|55602|CDKN2A interacting protein	0.942673	0.0	denovo_WM_7:57:0.410	denovo_WM_7:60:0.329
chr11	35208907	35208992	reg1005657.p2	5.774	+	TSC_hg19_v1_chr11_+_35198199 AK129808	-10737	+	AF098641 TSC_hg19_v1_chr11_+_35160882 EF581837 AB384769 CU678692 AK290424 FJ216964 M25078	-48089	+	TSC_hg19_v1_chr11_+_35160821 M59040	-48131	+	CR627009 TSC_hg19_v1_chr11_-_35278776 CR626999	69876	-	AB527302 AB209444 U03505 D85884 Z32517 AK298769 BC132768 AY066021 TSC_hg19_v1_chr11_-_35440905	231762	-	TSC_hg19_v1_chr11_-_35441106 NM_004171	232154	-	AK129808|CD44|960|CD44 molecule (Indian blood group)##AF098641|CD44|960|CD44 molecule (Indian blood group)##EF581837|CD44|960|CD44 molecule (Indian blood group)##AK290424|CD44|960|CD44 molecule (Indian blood group)##FJ216964|CD44|960|CD44 molecule (Indian blood group)##M25078|CD44|960|CD44 molecule (Indian blood group)##M59040|CD44|960|CD44 molecule (Indian blood group)##CR627009|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##CR626999|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AB209444|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##U03505|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##D85884|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##Z32517|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AK298769|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##BC132768|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AY066021|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##NM_004171|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2	0.0	0.0	
chr6	47683644	47683824	reg1008437.p1	5.774	+	AK095395 NM_153838 DQ315370	-17440	+	AY140953 DQ315369 NM_153839	-59461	+	TSC_hg19_v1_chr6_+_47445937 AF146277 BC069444	-237818	+	BC126194 BC126198 NM_181744 AY377391 AY288419 HQ258199	66054	+	BC136779 AK123835 AK299301 NM_001013732 NM_207499	352670	-	TSC_hg19_v1_chr6_-_48078931 AK300335	395191	-	AK095395|GPR115|221393|G protein-coupled receptor 115##NM_153838|GPR115|221393|G protein-coupled receptor 115##DQ315370|GPR115|221393|G protein-coupled receptor 115##AY140953|GPR111|222611|G protein-coupled receptor 111##DQ315369|GPR111|222611|G protein-coupled receptor 111##NM_153839|GPR111|222611|G protein-coupled receptor 111##AF146277|CD2AP|23607|CD2-associated protein##BC069444|CD2AP|23607|CD2-associated protein##BC126194|OPN5|221391|opsin 5##BC126198|OPN5|221391|opsin 5##NM_181744|OPN5|221391|opsin 5##AY377391|OPN5|221391|opsin 5##AY288419|OPN5|221391|opsin 5##HQ258199|OPN5|221391|opsin 5##BC136779|C6orf138|442213|chromosome 6 open reading frame 138##AK123835|C6orf138|442213|chromosome 6 open reading frame 138##AK299301|C6orf138|442213|chromosome 6 open reading frame 138##NM_001013732|C6orf138|442213|chromosome 6 open reading frame 138##NM_207499|C6orf138|442213|chromosome 6 open reading frame 138##AK300335|C6orf138|442213|chromosome 6 open reading frame 138	0.998956	0.0	denovo_WM_7:-5:0.457	denovo_WM_7:-6:0.457
chr1	20386597	20386704	reg1007915.p2	5.773	+	BC005919 NM_000300 NM_001161727 NM_001161728	-79731	-	M22430 AK291302 NM_001161729	-80528	-	AB464018 AF189279 BC069116 NM_014589	-136570	-	TSC_hg19_v1_chr1_+_20396654 NM_000929 BC036792 U03090	10094	+	AB590095 AM392918 AM392954 AM392977 AM393597 AM393824 BC025706 NM_012400 AF112982 AY358606 AK290406 AF188625 AK310156 AK311903 AK301396	59374	-	AK093645 AX748240 BX647458 NM_022819 AB528809	79218	+	BC005919|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_000300|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161727|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161728|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##M22430|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##AK291302|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##NM_001161729|PLA2G2A|5320|phospholipase A2, group IIA (platelets, synovial fluid)##AF189279|PLA2G2E|30814|phospholipase A2, group IIE##BC069116|PLA2G2E|30814|phospholipase A2, group IIE##NM_014589|PLA2G2E|30814|phospholipase A2, group IIE##NM_000929|PLA2G5|5322|phospholipase A2, group V##BC036792|PLA2G5|5322|phospholipase A2, group V##U03090|PLA2G5|5322|phospholipase A2, group V##AM392918|PLA2G2D|26279|phospholipase A2, group IID##AM392954|PLA2G2D|26279|phospholipase A2, group IID##AM392977|PLA2G2D|26279|phospholipase A2, group IID##AM393597|PLA2G2D|26279|phospholipase A2, group IID##AM393824|PLA2G2D|26279|phospholipase A2, group IID##BC025706|PLA2G2D|26279|phospholipase A2, group IID##NM_012400|PLA2G2D|26279|phospholipase A2, group IID##AF112982|PLA2G2D|26279|phospholipase A2, group IID##AY358606|PLA2G2D|26279|phospholipase A2, group IID##AK290406|PLA2G2D|26279|phospholipase A2, group IID##AF188625|PLA2G2D|26279|phospholipase A2, group IID##AK310156|PLA2G2D|26279|phospholipase A2, group IID##AK311903|PLA2G2D|26279|phospholipase A2, group IID##AK301396|PLA2G2D|26279|phospholipase A2, group IID##AK093645|PLA2G2F|64600|phospholipase A2, group IIF##BX647458|PLA2G2F|64600|phospholipase A2, group IIF##NM_022819|PLA2G2F|64600|phospholipase A2, group IIF	1.859825	0.0	denovo_WM_7:90:0.715	denovo_WM_7:105:0.276	denovo_WM_7:106:0.279	denovo_WM_7:107:0.282
chr15	90722742	90722906	reg1005653.p3	5.773	+	TSC_hg19_v1_chr15_-_90645713 AK312627	-77097	-	TSC_hg19_v1_chr15_-_90645704 NM_002168 X69433	-77119	-	DQ892817 DQ896063 CU679271 TSC_hg19_v1_chr15_-_90645701 BC071828 BC009244 AK222916 AK299987	-77162	-	TSC_hg19_v1_chr15_+_90728151 NM_020210 AK289991 AY358392	5372	+	TSC_hg19_v1_chr15_+_90744561 AY445887 NM_198925 AB051532 BC126438 BC144141 BC110853 AB385501 HQ258520 AK026108	21866	+	TSC_hg19_v1_chr15_-_90777138 AB451276 AB451406 AB463454 CR456955 DQ891196 DQ894379	54304	-	AK312627|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_002168|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##X69433|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ892817|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ896063|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC071828|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC009244|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK222916|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK299987|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_020210|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AK289991|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AY358392|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AY445887|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##NM_198925|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AB051532|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC126438|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC144141|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC110853|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##HQ258520|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AK026108|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AB451276|CIB1|10519|calcium and integrin binding 1 (calmyrin)##AB451406|CIB1|10519|calcium and integrin binding 1 (calmyrin)##CR456955|CIB1|10519|calcium and integrin binding 1 (calmyrin)##DQ891196|CIB1|10519|calcium and integrin binding 1 (calmyrin)##DQ894379|CIB1|10519|calcium and integrin binding 1 (calmyrin)	0.993937	0.0	denovo_WM_7:-2:0.687
chr12	31811919	31812099	reg1005896.p2	5.772	+	AK290248 NM_001135864	-11916	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-68091	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-332870	-	BC039535 NM_173802	111	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	605	+	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	69965	-	AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)	0.0	0.0	
chr3	49984468	49984648	reg1002298.p2	5.772	+	AK308794 AK303371 TSC_hg19_v1_chr3_+_49977584 AF091264 AK093836 AY216800 BC030057 EF566883 EF566884 EF566885 BC046643 AF042857	-6955	+	AK291719 NM_001167582 NM_005777 AK298108 AF069517 AL832236 TSC_hg19_v1_chr3_+_49977575 BX648535	-7032	+	BC047022 BC009459 AK092018 AK307140 AX747314 AK074404 TSC_hg19_v1_chr3_-_49967263 BC006299 AK315630 NM_001142501 NM_032355	-17239	-	NM_005778 TSC_hg19_v1_chr3_+_50126351	141787	+	TSC_hg19_v1_chr3_+_50126354 AF091263 AK297249 AK302766 AK297445 AK314032 BC002957 AB208813 AF103802 AF107493 AB586690	141822	+	TSC_hg19_v1_chr3_+_50126425 U23946	141877	+	AK308794|RBM6|10180|RNA binding motif protein 6##AK303371|RBM6|10180|RNA binding motif protein 6##AF091264|RBM6|10180|RNA binding motif protein 6##AK093836|RBM6|10180|RNA binding motif protein 6##AY216800|RBM6|10180|RNA binding motif protein 6##BC030057|RBM6|10180|RNA binding motif protein 6##BC046643|RBM6|10180|RNA binding motif protein 6##AF042857|RBM6|10180|RNA binding motif protein 6##AK291719|RBM6|10180|RNA binding motif protein 6##NM_001167582|RBM6|10180|RNA binding motif protein 6##NM_005777|RBM6|10180|RNA binding motif protein 6##AK298108|RBM6|10180|RNA binding motif protein 6##AF069517|RBM6|10180|RNA binding motif protein 6##AL832236|RBM6|10180|RNA binding motif protein 6##BX648535|RBM6|10180|RNA binding motif protein 6##BC047022|MON1A|84315|MON1 homolog A (yeast)##BC009459|MON1A|84315|MON1 homolog A (yeast)##AK092018|MON1A|84315|MON1 homolog A (yeast)##AK307140|MON1A|84315|MON1 homolog A (yeast)##AK074404|MON1A|84315|MON1 homolog A (yeast)##BC006299|MON1A|84315|MON1 homolog A (yeast)##AK315630|MON1A|84315|MON1 homolog A (yeast)##NM_001142501|MON1A|84315|MON1 homolog A (yeast)##NM_032355|MON1A|84315|MON1 homolog A (yeast)##NM_005778|RBM5|10181|RNA binding motif protein 5##AF091263|RBM5|10181|RNA binding motif protein 5##AK297249|RBM5|10181|RNA binding motif protein 5##AK302766|RBM5|10181|RNA binding motif protein 5##AK297445|RBM5|10181|RNA binding motif protein 5##AK314032|RBM5|10181|RNA binding motif protein 5##BC002957|RBM5|10181|RNA binding motif protein 5##AB208813|RBM5|10181|RNA binding motif protein 5##AF103802|RBM5|10181|RNA binding motif protein 5##AF107493|RBM5|10181|RNA binding motif protein 5##AB586690|RBM5|10181|RNA binding motif protein 5##U23946|RBM5|10181|RNA binding motif protein 5	0.995126	0.0	
chr4	87932199	87932354	reg1006676.p1	5.772	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-3955	+	TSC_hg19_v1_chr4_+_87857481 L13743	-74793	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-76061	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	35975	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	209386	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	311749	-	L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13	1.983918	0.0	denovo_WM_7:-22:0.992	denovo_WM_7:-37:0.992
chr11	62495650	62495762	reg1000283.p3	5.771	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-771	-	TSC_hg19_v1_chr11_-_62494900 DQ470474 AK122942 NM_001079559	-859	-	TSC_hg19_v1_chr11_-_62476984 BC009866 AK315423	-18713	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	321	+	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	25888	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	33322	+	BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##DQ470474|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##AK122942|HNRNPUL2-BSCL2|100534595|HNRNPUL2-BSCL2 readthrough##NM_001079559|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##BC009866|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##AK315423|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G	0.0	0.0	
chr4	48250780	48250938	reg1007683.p1	5.771	+	BC017829 L27071 NM_003328	-114601	-	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-232056	+	X64802 TSC_hg19_v1_chr4_-_48018662	-232222	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	20976	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	92552	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	92754	+	BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2	0.986475	0.0	denovo_WM_7:32:0.807
chr7	128191195	128191321	reg1008450.p1	5.771	+	NM_018396 TSC_hg19_v1_chr7_+_128116813 AK302775 BC107586 AK002212 BC064929 BC121115 BC121116 AK299960	-74421	+	TSC_hg19_v1_chr7_+_128095931 NM_001098786 NM_013332 AF144755 AK024729 AK222583 BC008573 BC001863 BC093742 BC112183	-95292	+	TSC_hg19_v1_chr7_-_128050037 AK092452 BC033622 AK054667 AK122994 NM_000883 NM_001102605 NM_001142576 NM_183243	-141221	-	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	121088	+	TSC_hg19_v1_chr7_+_128349114 AK093161 AK302221 AX747964 BC040906 AK310426	157869	+	BC032842 AF367470 NM_032599 AK313608 AK310308 BC037248	164183	+	NM_018396|METTL2B|55798|methyltransferase like 2B##AK302775|METTL2B|55798|methyltransferase like 2B##BC107586|METTL2B|55798|methyltransferase like 2B##AK002212|METTL2B|55798|methyltransferase like 2B##BC064929|METTL2B|55798|methyltransferase like 2B##BC121115|METTL2B|55798|methyltransferase like 2B##BC121116|METTL2B|55798|methyltransferase like 2B##AK299960|METTL2B|55798|methyltransferase like 2B##NM_001098786|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_013332|HILPDA|29923|hypoxia inducible lipid droplet-associated##AF144755|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK024729|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK222583|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC008573|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC001863|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC093742|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC112183|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK092452|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC033622|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054667|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK122994|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_000883|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001102605|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142576|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_183243|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2##AK093161|FAM71F1|84691|family with sequence similarity 71, member F1##AK302221|FAM71F1|84691|family with sequence similarity 71, member F1##BC040906|FAM71F1|84691|family with sequence similarity 71, member F1##AK310426|FAM71F1|84691|family with sequence similarity 71, member F1##BC032842|FAM71F1|84691|family with sequence similarity 71, member F1##AF367470|FAM71F1|84691|family with sequence similarity 71, member F1##NM_032599|FAM71F1|84691|family with sequence similarity 71, member F1##AK313608|FAM71F1|84691|family with sequence similarity 71, member F1##AK310308|FAM71F1|84691|family with sequence similarity 71, member F1##BC037248|FAM71F1|84691|family with sequence similarity 71, member F1	0.990013	0.0	denovo_WM_7:-27:0.243	denovo_WM_7:-28:0.243	denovo_WM_7:-29:0.243	denovo_WM_7:-30:0.243
chr10	105670774	105670950	reg1008043.p1	5.770	+	TSC_hg19_v1_chr10_-_105615306 NM_014631	-55592	-	TSC_hg19_v1_chr10_-_105452931 AK294736 AK295314 AK315983 AK295660	-217912	-	TSC_hg19_v1_chr10_-_105437934 AK304828	-232941	-	TSC_hg19_v1_chr10_-_105677943 BC017400	7067	-	TSC_hg19_v1_chr10_-_105677986 NM_024928	7153	-	TSC_hg19_v1_chr10_+_105726926 AK307389	56024	+	NM_014631|SH3PXD2A|9644|SH3 and PX domains 2A##AK294736|SH3PXD2A|9644|SH3 and PX domains 2A##AK295314|SH3PXD2A|9644|SH3 and PX domains 2A##AK315983|SH3PXD2A|9644|SH3 and PX domains 2A##AK295660|SH3PXD2A|9644|SH3 and PX domains 2A##AK304828|SH3PXD2A|9644|SH3 and PX domains 2A##BC017400|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1##NM_024928|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1##AK307389|SLK|9748|STE20-like kinase	1.011871	0.0	denovo_WM_7:-82:0.789
chr16	27294596	27294721	reg1009284.p1	5.770	+	TSC_hg19_v1_chr16_-_27280058 AF161451 AF161455 AK056795 NM_145080	-14573	-	TSC_hg19_v1_chr16_-_27280055 AK315674	-14606	-	AK297166 NM_001145348	-79363	+	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	30596	+	TSC_hg19_v1_chr16_+_27325301 BC110343 AK223591 X52425	30660	+	TSC_hg19_v1_chr16_+_27341339 BC136365 BC151131	46686	+	AF161451|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161455|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK056795|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##NM_145080|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK315674|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK297166|JMJD5|79831|jumonji domain containing 5##NM_001145348|JMJD5|79831|jumonji domain containing 5##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor##BC110343|IL4R|3566|interleukin 4 receptor##AK223591|IL4R|3566|interleukin 4 receptor##X52425|IL4R|3566|interleukin 4 receptor##BC136365|IL4R|3566|interleukin 4 receptor##BC151131|IL4R|3566|interleukin 4 receptor	1.574343	0.0	denovo_WM_7:-50:0.532	denovo_WM_7:-63:0.231	denovo_WM_7:-66:0.690
chr2	144488441	144488621	reg1007829.p2	5.770	+	TSC_hg19_v1_chr2_+_143886987 AK303490 BC016701 BC038976	-601540	+	NM_018460 BC029346 TSC_hg19_v1_chr2_+_143886947 AK308219 AF212222 AF217507 AF217522 AY219338 AK226014	-601601	+	BC000879 TSC_hg19_v1_chr2_+_143635232 AK292095 AK315343 AK290900	-853291	+	NM_024659	506374	-	AY281366 NM_001006636	563528	-	BC017741 AK291357 TSC_hg19_v1_chr2_-_145090037 BC061699	601501	-	AK303490|ARHGAP15|55843|Rho GTPase activating protein 15##BC016701|ARHGAP15|55843|Rho GTPase activating protein 15##BC038976|ARHGAP15|55843|Rho GTPase activating protein 15##NM_018460|ARHGAP15|55843|Rho GTPase activating protein 15##AK308219|ARHGAP15|55843|Rho GTPase activating protein 15##AF212222|ARHGAP15|55843|Rho GTPase activating protein 15##AF217507|ARHGAP15|55843|Rho GTPase activating protein 15##AF217522|ARHGAP15|55843|Rho GTPase activating protein 15##AY219338|ARHGAP15|55843|Rho GTPase activating protein 15##AK226014|ARHGAP15|55843|Rho GTPase activating protein 15##BC000879|KYNU|8942|kynureninase##AK292095|KYNU|8942|kynureninase##AK315343|KYNU|8942|kynureninase##AK290900|KYNU|8942|kynureninase##NM_024659|GTDC1|79712|glycosyltransferase-like domain containing 1##AY281366|GTDC1|79712|glycosyltransferase-like domain containing 1##NM_001006636|GTDC1|79712|glycosyltransferase-like domain containing 1##BC017741|GTDC1|79712|glycosyltransferase-like domain containing 1##AK291357|GTDC1|79712|glycosyltransferase-like domain containing 1##BC061699|GTDC1|79712|glycosyltransferase-like domain containing 1	2.023214	0.0	denovo_WM_7:-22:0.314	denovo_WM_7:-23:0.314	denovo_WM_7:-24:0.314
chr3	193810609	193810745	reg1009157.p2	5.770	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-499512	+	TSC_hg19_v1_chr3_+_193311006 BC043443 BC075805 AB011139	-499610	+	TSC_hg19_v1_chr3_+_193310928 NM_015560 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837	-499722	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	43256	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	43278	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	261397	-	BC043443|OPA1|4976|optic atrophy 1 (autosomal dominant)##BC075805|OPA1|4976|optic atrophy 1 (autosomal dominant)##AB011139|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_015560|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130831|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130832|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130833|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130834|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130835|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130836|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130837|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2	0.991272	0.0	denovo_WM_7:-36:0.401	denovo_WM_7:-38:0.402
chr1	14870770	14870871	reg1006550.p1	5.769	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	-794879	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	-794897	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	-794935	+	TSC_hg19_v1_chr1_+_14925186 AB028949 AY505119 NM_015209 NM_201628	54374	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	379899	+	AY505121 NM_001018001	385475	+	AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain##AB028949|KAZN|23254|kazrin, periplakin interacting protein##AY505119|KAZN|23254|kazrin, periplakin interacting protein##NM_015209|KAZN|23254|kazrin, periplakin interacting protein##NM_201628|KAZN|23254|kazrin, periplakin interacting protein##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein	2.025603	0.0	denovo_WM_7:5:0.806
chr13	73745426	73745532	reg1007121.p1	5.769	+	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	-112275	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-389169	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-389273	-	AF161471 AF113122 NM_007249	962510	-	TSC_hg19_v1_chr13_-_74708425 AK291397	962917	-	CR749622 TSC_hg19_v1_chr13_-_75901948	2156443	-	AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12##CR749622|TBC1D4|9882|TBC1 domain family, member 4	0.993132	0.0	
chr16	31376636	31376805	reg1008697.p2	5.769	+	TSC_hg19_v1_chr16_+_31366549 BC037577 BC038237 DQ892486 DQ895697	-10169	+	TSC_hg19_v1_chr16_+_31366521 M81695	-10198	+	TSC_hg19_v1_chr16_+_31366508 AK296666 AK309642 NM_000887	-10228	+	AK097160 AB208945 NM_005353 AK301028 AB384792 U37028	27918	+	DQ890561 DQ893723 M83308 BC029818 NM_005205	62979	-	AK096248 NM_001136509	77626	-	BC037577|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##BC038237|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##DQ892486|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##DQ895697|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##M81695|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##AK296666|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##AK309642|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##NM_000887|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##AK097160|ITGAD|3681|integrin, alpha D##AB208945|ITGAD|3681|integrin, alpha D##NM_005353|ITGAD|3681|integrin, alpha D##AK301028|ITGAD|3681|integrin, alpha D##U37028|ITGAD|3681|integrin, alpha D##DQ890561|COX6A2|1339|cytochrome c oxidase subunit VIa polypeptide 2##DQ893723|COX6A2|1339|cytochrome c oxidase subunit VIa polypeptide 2##M83308|COX6A2|1339|cytochrome c oxidase subunit VIa polypeptide 2##BC029818|COX6A2|1339|cytochrome c oxidase subunit VIa polypeptide 2##NM_005205|COX6A2|1339|cytochrome c oxidase subunit VIa polypeptide 2##AK096248|ZNF843|283933|zinc finger protein 843##NM_001136509|ZNF843|283933|zinc finger protein 843	0.0	0.0	
chr15	96876243	96876357	reg1007002.p1	5.768	+	AK316086 NM_001145156	-507	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	-2323	+	BC106083 NM_001145155 FM208183	-7139	+	NM_001145157	268	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	450372	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1627619	+	AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4	0.381614	0.0	denovo_WM_7:17:0.202
chr19	2760531	2760640	reg1007117.p1	5.768	+	TSC_hg19_v1_chr19_-_2740065 NM_144564 NM_213568	-20518	-	TSC_hg19_v1_chr19_-_2740016 AK302600 BC020571 AK002044	-20557	-	TSC_hg19_v1_chr19_-_2740007 BC005869	-20581	-	TSC_hg19_v1_chr19_-_2783272 AJ133129 BC005165 BC008885 BC000390 BC002989	22677	-	TSC_hg19_v1_chr19_-_2783313 AL050156	22729	-	AK293535 TSC_hg19_v1_chr19_-_2783326	22742	-	NM_144564|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##NM_213568|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK302600|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC020571|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK002044|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC005869|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AJ133129|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC005165|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC008885|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC000390|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC002989|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AL050156|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AK293535|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	1.337185	0.0	denovo_WM_7:-61:0.287
chr5	169084242	169084383	reg1008168.p1	5.768	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-20012	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-20068	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-73591	+	AK055998 NM_001129891	323431	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	448659	+	BC030767 NM_001102609 BC092511	575684	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.0	0.0	
chr1	42783126	42783282	reg1008755.p2	5.767	+	TSC_hg19_v1_chr1_-_42776761 AB463045	-6443	-	M95174 M97496 NM_033553	-152814	-	NM_007102 U34279 BC093781 Z50753 BC093779 BC069301	-164108	+	TSC_hg19_v1_chr1_-_42800873 AB028964 BC152441 NM_001198851 BC151828	17548	-	TSC_hg19_v1_chr1_-_42800884 BC014182 NM_001198852	17686	-	BC063298 NM_014947 TSC_hg19_v1_chr1_-_42800903	17698	-	M95174|GUCA2A|2980|guanylate cyclase activator 2A (guanylin)##M97496|GUCA2A|2980|guanylate cyclase activator 2A (guanylin)##NM_033553|GUCA2A|2980|guanylate cyclase activator 2A (guanylin)##NM_007102|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##U34279|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##BC093781|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##Z50753|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##BC093779|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##BC069301|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##AB028964|FOXJ3|22887|forkhead box J3##BC152441|FOXJ3|22887|forkhead box J3##NM_001198851|FOXJ3|22887|forkhead box J3##BC151828|FOXJ3|22887|forkhead box J3##BC014182|FOXJ3|22887|forkhead box J3##NM_001198852|FOXJ3|22887|forkhead box J3##BC063298|FOXJ3|22887|forkhead box J3##NM_014947|FOXJ3|22887|forkhead box J3	0.997958	0.021851	
chr18	34061720	34061826	reg1006441.p2	5.767	+	TSC_hg19_v1_chr18_+_33877676 AK128053 NM_025135 AB084087 HM191478	-184059	+	TSC_hg19_v1_chr18_+_33767481 NM_017947 AK000740 BC012079 AK222886 DQ895841 EU176372	-294297	+	TSC_hg19_v1_chr18_+_33709886 AK300201 BC032553 AK222791 AK001741 BC007098 AB590856 CU689420 CR457269	-351885	+	TSC_hg19_v1_chr18_-_34408744 AB463512 BC022199 AK000543	346990	-	TSC_hg19_v1_chr18_-_34408937 AK295817 BC015178	347121	-	AB073382 TSC_hg19_v1_chr18_-_34408948	347179	-	AK128053|FHOD3|80206|formin homology 2 domain containing 3##NM_025135|FHOD3|80206|formin homology 2 domain containing 3##AB084087|FHOD3|80206|formin homology 2 domain containing 3##HM191478|FHOD3|80206|formin homology 2 domain containing 3##NM_017947|MOCOS|55034|molybdenum cofactor sulfurase##AK000740|MOCOS|55034|molybdenum cofactor sulfurase##BC012079|MOCOS|55034|molybdenum cofactor sulfurase##AK222886|MOCOS|55034|molybdenum cofactor sulfurase##DQ895841|MOCOS|55034|molybdenum cofactor sulfurase##EU176372|MOCOS|55034|molybdenum cofactor sulfurase##AK300201|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC032553|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK222791|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK001741|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC007098|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##CR457269|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC022199|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK000543|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK295817|TPGS2|25941|tubulin polyglutamylase complex subunit 2##BC015178|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AB073382|TPGS2|25941|tubulin polyglutamylase complex subunit 2	0.0	0.0	
chr1	151619538	151619667	reg1009777.p1	5.766	+	AY044866 TSC_hg19_v1_chr1_+_151611385	-8242	+	TSC_hg19_v1_chr1_+_151584672 AB007957	-34904	+	BC100999 TSC_hg19_v1_chr1_+_151584664	-34939	+	BC107862 TSC_hg19_v1_chr1_+_151630762	11134	+	AB209264 NM_001172648 NM_001172649	69234	-	BC004145 TSC_hg19_v1_chr1_-_151689279 BC052491 AK299681 AY165003 NM_007185	69667	-	AY044866|SNX27|81609|sorting nexin family member 27##AB007957|SNX27|81609|sorting nexin family member 27##BC100999|SNX27|81609|sorting nexin family member 27##BC107862|SNX27|81609|sorting nexin family member 27##AB209264|CELF3|11189|CUGBP, Elav-like family member 3##NM_001172648|CELF3|11189|CUGBP, Elav-like family member 3##NM_001172649|CELF3|11189|CUGBP, Elav-like family member 3##BC004145|CELF3|11189|CUGBP, Elav-like family member 3##BC052491|CELF3|11189|CUGBP, Elav-like family member 3##AY165003|CELF3|11189|CUGBP, Elav-like family member 3##NM_007185|CELF3|11189|CUGBP, Elav-like family member 3	1.771597	0.0	denovo_WM_7:13:0.298	denovo_WM_7:14:0.298	denovo_WM_7:15:0.298	denovo_WM_7:33:0.707
chr20	7368499	7368604	reg1003363.p1	5.766	+	BC069214 NM_001200	-619807	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-1264388	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-1264674	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	552551	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	631749	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	631856	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	1.994639	0.0	denovo_WM_7:19:0.225	denovo_WM_7:20:0.770
chr6_mcf_hap5	2554081	2554190	reg1008908.p2	5.766	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.967375	0.0	denovo_WM_7:62:0.386	denovo_WM_7:63:0.290	denovo_WM_7:79:0.295	denovo_WM_7:80:0.391
chr9	94477357	94477457	reg1005484.p3	5.766	+	TSC_hg19_v1_chr9_-_94186159 NM_005384	-291225	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	-291363	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-353208	-	TSC_hg19_v1_chr9_-_94711095 BC033697	233721	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	234982	-	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	400257	-	NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1	0.013868	0.0	
chr15	85563134	85563252	reg1006001.p1	5.765	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-37867	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-37956	+	TSC_hg19_v1_chr15_+_85523735 BC060762 AK074280 NM_001243137	-39491	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	103125	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	360698	+	AF127481 NM_144767	657074	+	BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##BC060762|PDE8A|5151|phosphodiesterase 8A##AK074280|PDE8A|5151|phosphodiesterase 8A##NM_001243137|PDE8A|5151|phosphodiesterase 8A##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13	1.809514	0.0	denovo_WM_7:1:0.461	denovo_WM_7:-13:0.323
chr2	117816017	117816123	reg1007656.p1	5.765	+	NM_001178034 DQ857322 AK296490 NM_001004360 AY387785 AB040925 AB385475 DQ857323	-1896409	+	NM_001178037 DQ857321	-1993780	+	AK055256 BC038514 NM_001178036	-2596904	+	NM_006773 TSC_hg19_v1_chr2_+_118572276 BC024739	756198	+	AK001467 TSC_hg19_v1_chr2_+_118572283	756213	+	TSC_hg19_v1_chr2_+_118572298 BC003360 BC001238	756247	+	NM_001178034|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857322|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK296490|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001004360|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AY387785|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AB040925|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857323|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178037|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857321|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_006773|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##BC024739|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##AK001467|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##BC003360|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18##BC001238|DDX18|8886|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	0.995796	0.0	
chr8	123095292	123095433	reg1007005.p1	5.765	+	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	-441736	-	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-1270856	-	BC098573 TSC_hg19_v1_chr8_-_121824269	-1271092	-	TSC_hg19_v1_chr8_+_123793897 NM_014943	698549	+	BC042145 TSC_hg19_v1_chr8_+_123794000	698632	+	TSC_hg19_v1_chr8_+_123794108 AB020661	698741	+	BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC098573|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##AB020661|ZHX2|22882|zinc fingers and homeoboxes 2	0.0	0.0	
chr1	170638581	170638703	reg1007300.p2	5.764	+	BC074993 NM_006902 NM_022716 EU446648 AB527492 AB451463 TSC_hg19_v1_chr1_+_170633380 M95929	-5280	+	TSC_hg19_v1_chr1_+_170632302 AK225968	-6352	+	TSC_hg19_v1_chr1_+_170501309 AK308339 NM_001146039 NM_152281 AK021814 BC064945 CU687974 BC047476 AK057661	-137339	+	NM_001163629 NM_025063 AK027203 BC113390 BC113392	266005	+	NM_001002294 NM_006894 AK223166 TSC_hg19_v1_chr1_+_171060044 AK298406 Z47552 AK298456 AK296105 AK310785 AK313197 BC032016	421399	+	NM_001460 AK304385 AK312877 BC005894 Y09267 AL833218	515780	+	BC074993|PRRX1|5396|paired related homeobox 1##NM_006902|PRRX1|5396|paired related homeobox 1##NM_022716|PRRX1|5396|paired related homeobox 1##EU446648|PRRX1|5396|paired related homeobox 1##AB451463|PRRX1|5396|paired related homeobox 1##AK225968|PRRX1|5396|paired related homeobox 1##AK308339|GORAB|92344|golgin, RAB6-interacting##NM_001146039|GORAB|92344|golgin, RAB6-interacting##NM_152281|GORAB|92344|golgin, RAB6-interacting##AK021814|GORAB|92344|golgin, RAB6-interacting##BC064945|GORAB|92344|golgin, RAB6-interacting##BC047476|GORAB|92344|golgin, RAB6-interacting##AK057661|GORAB|92344|golgin, RAB6-interacting##NM_001163629|C1orf129|80133|chromosome 1 open reading frame 129##NM_025063|C1orf129|80133|chromosome 1 open reading frame 129##AK027203|C1orf129|80133|chromosome 1 open reading frame 129##BC113390|C1orf129|80133|chromosome 1 open reading frame 129##BC113392|C1orf129|80133|chromosome 1 open reading frame 129##NM_001002294|FMO3|2328|flavin containing monooxygenase 3##NM_006894|FMO3|2328|flavin containing monooxygenase 3##AK223166|FMO3|2328|flavin containing monooxygenase 3##AK298406|FMO3|2328|flavin containing monooxygenase 3##Z47552|FMO3|2328|flavin containing monooxygenase 3##AK296105|FMO3|2328|flavin containing monooxygenase 3##AK310785|FMO3|2328|flavin containing monooxygenase 3##AK313197|FMO3|2328|flavin containing monooxygenase 3##BC032016|FMO3|2328|flavin containing monooxygenase 3##NM_001460|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AK304385|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AK312877|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##BC005894|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##Y09267|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AL833218|FMO2|2327|flavin containing monooxygenase 2 (non-functional)	1.970607	0.0	denovo_WM_7:-52:0.876	denovo_WM_7:-67:0.877
chr12	133533041	133533174	reg1008104.p2	5.764	+	BC020877 TSC_hg19_v1_chr12_-_133532893 AL832191 NM_183238 AK027873 AK122878 AL832623 NM_001164715	-234	-	AK027687 TSC_hg19_v1_chr12_-_133464201 NM_001161344 NM_001161345 NM_001161346 NM_001161347 NM_018223	-68896	-	TSC_hg19_v1_chr12_-_133464153 AK001658 AK302785 AK304333 AF170724	-68935	-	TSC_hg19_v1_chr12_+_133563005 AK291243 BC046206 NM_019591	29891	+	NM_003428 TSC_hg19_v1_chr12_+_133613979 M27878 NM_001127372	80836	+	TSC_hg19_v1_chr12_+_133614094 BC062552 AK314232	80984	+	BC020877|ZNF605|100289635|zinc finger protein 605##AL832191|ZNF605|100289635|zinc finger protein 605##NM_183238|ZNF605|100289635|zinc finger protein 605##AK027873|ZNF605|100289635|zinc finger protein 605##AK122878|ZNF605|100289635|zinc finger protein 605##AL832623|ZNF605|100289635|zinc finger protein 605##NM_001164715|ZNF605|100289635|zinc finger protein 605##AK027687|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161344|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161345|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161346|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161347|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_018223|CHFR|55743|checkpoint with forkhead and ring finger domains##AK001658|CHFR|55743|checkpoint with forkhead and ring finger domains##AK302785|CHFR|55743|checkpoint with forkhead and ring finger domains##AK304333|CHFR|55743|checkpoint with forkhead and ring finger domains##AF170724|CHFR|55743|checkpoint with forkhead and ring finger domains##AK291243|ZNF26|7574|zinc finger protein 26##BC046206|ZNF26|7574|zinc finger protein 26##NM_019591|ZNF26|7574|zinc finger protein 26##NM_003428|ZNF84|7637|zinc finger protein 84##M27878|ZNF84|7637|zinc finger protein 84##NM_001127372|ZNF84|7637|zinc finger protein 84##BC062552|ZNF84|7637|zinc finger protein 84##AK314232|ZNF84|7637|zinc finger protein 84	0.991265	0.02003	
chr12	4253164	4253326	reg1008208.p1	5.764	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-270745	-	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-390863	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-390977	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	129799	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	177146	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	235555	-	AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23	0.957152	0.015023	denovo_WM_7:12:0.473	denovo_WM_7:13:0.473
chr15	82578902	82579082	reg1005470.p1	5.764	+	TSC_hg19_v1_chr15_+_82555158 AL833762 NM_001008226 BC144647 AK304339	-23839	+	TSC_hg19_v1_chr15_-_82555076 NM_001040610 NM_024580	-23903	-	BC014628 TSC_hg19_v1_chr15_-_82555043 AK300348 AK056656 BX538332	-23961	-	NM_001164465	62713	-	TSC_hg19_v1_chr15_+_82647308 BC066934	68339	+	NM_198181 CR936812	143224	+	AL833762|FAM154B|283726|family with sequence similarity 154, member B##NM_001008226|FAM154B|283726|family with sequence similarity 154, member B##AK304339|FAM154B|283726|family with sequence similarity 154, member B##NM_001040610|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##NM_024580|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##BC014628|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##AK300348|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##AK056656|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##BX538332|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##BC066934|UBE2Q2P2|100134869|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2##NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9	0.0	0.0	
chr17	25804648	25804813	reg1008955.p2	5.764	+	BC035488 BC042106 NM_014238	-5701	+	TSC_hg19_v1_chr17_+_25621147 AF069313 AF240696 BC021110 AF112205 AF106683 AF072880 AB463346 AM393409 AM393665 CU676828	-183449	+	AL110243 NM_015626 NM_134265 AK307114 TSC_hg19_v1_chr17_+_25621139 AL110269 AK074917 AK294516 AK300262 BC048007 AK222576	-183608	+	TSC_hg19_v1_chr17_+_25958181 NM_002308 NM_009587	153438	+	TSC_hg19_v1_chr17_+_25958213 AB006782 AK223232	153473	+	TSC_hg19_v1_chr17_+_25958238 AB005894 AK301624 BC110340 AK296031	153498	+	BC035488|KSR1|8844|kinase suppressor of ras 1##BC042106|KSR1|8844|kinase suppressor of ras 1##NM_014238|KSR1|8844|kinase suppressor of ras 1##AF069313|WSB1|26118|WD repeat and SOCS box containing 1##AF240696|WSB1|26118|WD repeat and SOCS box containing 1##BC021110|WSB1|26118|WD repeat and SOCS box containing 1##AF112205|WSB1|26118|WD repeat and SOCS box containing 1##AF106683|WSB1|26118|WD repeat and SOCS box containing 1##AF072880|WSB1|26118|WD repeat and SOCS box containing 1##AM393409|WSB1|26118|WD repeat and SOCS box containing 1##AM393665|WSB1|26118|WD repeat and SOCS box containing 1##AL110243|WSB1|26118|WD repeat and SOCS box containing 1##NM_015626|WSB1|26118|WD repeat and SOCS box containing 1##NM_134265|WSB1|26118|WD repeat and SOCS box containing 1##AK307114|WSB1|26118|WD repeat and SOCS box containing 1##AL110269|WSB1|26118|WD repeat and SOCS box containing 1##AK074917|WSB1|26118|WD repeat and SOCS box containing 1##AK294516|WSB1|26118|WD repeat and SOCS box containing 1##AK300262|WSB1|26118|WD repeat and SOCS box containing 1##BC048007|WSB1|26118|WD repeat and SOCS box containing 1##AK222576|WSB1|26118|WD repeat and SOCS box containing 1##NM_002308|LGALS9|3965|lectin, galactoside-binding, soluble, 9##NM_009587|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB006782|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK223232|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB005894|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK301624|LGALS9|3965|lectin, galactoside-binding, soluble, 9##BC110340|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK296031|LGALS9|3965|lectin, galactoside-binding, soluble, 9	0.979177	0.0	denovo_WM_7:19:0.812
chr2	65456948	65457090	reg1000727.p4	5.764	+	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-2084	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-2283	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-99678	-	TSC_hg19_v1_chr2_-_65593766 AK299079	136754	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	136879	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	202193	-	NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2	0.034305	0.0	
chrX	9723463	9723615	reg1006402.p1	5.764	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	-290305	+	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	-292192	+	BC120955 BC120956 NM_205849	-722437	-	Z48804 BC015657 BC068977 NM_000273	10421	-	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	30941	+	BC140866 TSC_hg19_v1_chrX_+_9754543	31004	+	Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##BC140866|SHROOM2|357|shroom family member 2	1.952144	0.0	denovo_WM_7:0:0.239	denovo_WM_7:0:0.239	denovo_WM_7:1:0.239	denovo_WM_7:2:0.239	denovo_WM_7:-41:0.263
chr18	74853830	74853967	reg1005589.p1	5.763	+	TSC_hg19_v1_chr18_-_74844774 NM_001025100 NM_001025101	-9119	-	TSC_hg19_v1_chr18_-_74844720 BC065248 AB208986 L18865	-9181	-	TSC_hg19_v1_chr18_-_74729052 AK314553 NM_001025081 NM_001025090 NM_001025092 NM_002385 AK293922	-124831	-	TSC_hg19_v1_chr18_+_74961925 NM_001480	108068	+	BC016792 TSC_hg19_v1_chr18_-_75705702	851794	-	BC129827 BC148296 NM_171999	1886376	+	NM_001025100|MBP|4155|myelin basic protein##NM_001025101|MBP|4155|myelin basic protein##BC065248|MBP|4155|myelin basic protein##AB208986|MBP|4155|myelin basic protein##L18865|MBP|4155|myelin basic protein##AK314553|MBP|4155|myelin basic protein##NM_001025081|MBP|4155|myelin basic protein##NM_001025090|MBP|4155|myelin basic protein##NM_001025092|MBP|4155|myelin basic protein##NM_002385|MBP|4155|myelin basic protein##AK293922|MBP|4155|myelin basic protein##NM_001480|GALR1|2587|galanin receptor 1##BC148296|SALL3|27164|sal-like 3 (Drosophila)##NM_171999|SALL3|27164|sal-like 3 (Drosophila)	0.993262	0.669733	CTCF.p2:-64:0.670
chr10	15691547	15691669	reg1008690.p1	5.762	+	AL050367 BC109302 BC109303 NM_001010924 AY683003 TSC_hg19_v1_chr10_-_15413235	-278459	-	BT007024 CU675371 DQ890667 DQ893848 BC006376 AK315085 AK094904 AF043325 TSC_hg19_v1_chr10_-_15210693 NM_004808	-480947	-	BC157831 BC171823 TSC_hg19_v1_chr10_-_15197364	-494253	-	L36531 AB587331 NM_003638 AK297740 AK308240 TSC_hg19_v1_chr10_-_15761922	70185	-	BC061585 TSC_hg19_v1_chr10_-_15902498 AF176916 AL833873 BC020605 BC067799 AK023459 NM_024948	210883	-	AK314910 BC015092 NM_001001484 NM_030664 BC050411 BX648556 AK095486 TSC_hg19_v1_chr10_+_16479008 AF212237	787377	+	AL050367|FAM171A1|221061|family with sequence similarity 171, member A1##BC109302|FAM171A1|221061|family with sequence similarity 171, member A1##BC109303|FAM171A1|221061|family with sequence similarity 171, member A1##NM_001010924|FAM171A1|221061|family with sequence similarity 171, member A1##AY683003|FAM171A1|221061|family with sequence similarity 171, member A1##BT007024|NMT2|9397|N-myristoyltransferase 2##DQ890667|NMT2|9397|N-myristoyltransferase 2##DQ893848|NMT2|9397|N-myristoyltransferase 2##BC006376|NMT2|9397|N-myristoyltransferase 2##AK315085|NMT2|9397|N-myristoyltransferase 2##AK094904|NMT2|9397|N-myristoyltransferase 2##AF043325|NMT2|9397|N-myristoyltransferase 2##NM_004808|NMT2|9397|N-myristoyltransferase 2##BC157831|LOC100192204|100192204|peptidylprolyl isomerase A (cyclophilin A) pseudogene##L36531|ITGA8|8516|integrin, alpha 8##NM_003638|ITGA8|8516|integrin, alpha 8##AK297740|ITGA8|8516|integrin, alpha 8##AK308240|ITGA8|8516|integrin, alpha 8##BC061585|FAM188A|80013|family with sequence similarity 188, member A##AF176916|FAM188A|80013|family with sequence similarity 188, member A##AL833873|FAM188A|80013|family with sequence similarity 188, member A##BC020605|FAM188A|80013|family with sequence similarity 188, member A##BC067799|FAM188A|80013|family with sequence similarity 188, member A##AK023459|FAM188A|80013|family with sequence similarity 188, member A##NM_024948|FAM188A|80013|family with sequence similarity 188, member A##AK314910|PTER|9317|phosphotriesterase related##BC015092|PTER|9317|phosphotriesterase related##NM_001001484|PTER|9317|phosphotriesterase related##NM_030664|PTER|9317|phosphotriesterase related##BC050411|PTER|9317|phosphotriesterase related##BX648556|PTER|9317|phosphotriesterase related##AK095486|PTER|9317|phosphotriesterase related##AF212237|PTER|9317|phosphotriesterase related	0.993792	0.916168	denovo_WM_7:14:0.248	denovo_WM_7:15:0.248	denovo_WM_7:16:0.248	denovo_WM_7:17:0.248	CTCF.p2:-17:0.916
chr19	11236928	11237083	reg1007891.p1	5.762	+	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	-36820	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	-36873	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	-36928	+	AY456387 TSC_hg19_v1_chr19_-_11266459 AK075287 AK303157 AK303266 BC105037 BC105039 NM_182513	29462	-	AB528156 AY639929 CU687364 NM_015493	68220	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	71253	-	AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AY456387|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK075287|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303157|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303266|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105037|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105039|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_182513|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2	1.613703	0.998731	denovo_WM_7:14:0.327	CTCF.p2:-48:0.999	denovo_WM_7:59:0.310	denovo_WM_7:60:0.310	denovo_WM_7:61:0.310
chr12	103855739	103855843	reg1008456.p1	5.761	+	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	-503699	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-504270	+	L47726 NM_000277 U49897	-544411	-	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	33955	-	AY311388 AJ295695 NM_017564 AB052958	125270	+	AB032773 TSC_hg19_v1_chr12_-_104234857	379033	-	DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3	2.484879	0.0	denovo_WM_7:68:0.554	denovo_WM_7:88:0.422	denovo_WM_7:91:0.228	denovo_WM_7:103:0.250	denovo_WM_7:104:0.365	denovo_WM_7:106:0.221
chr15	70173053	70173214	reg1007222.p1	5.761	+	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	-427912	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-465771	-	TSC_hg19_v1_chr15_+_69706687 AK310402 EU176620	-466387	+	BC015421 TSC_hg19_v1_chr15_-_70341948	168776	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	217094	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	217110	-	NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##AK056793|LOC145694|145694|uncharacterized LOC145694##AK310402|KIF23|9493|kinesin family member 23##EU176620|KIF23|9493|kinesin family member 23##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	1.428147	0.0	denovo_WM_7:-32:0.767	denovo_WM_7:-49:0.296
chr16	68309487	68309646	reg1005046.p1	5.761	+	TSC_hg19_v1_chr16_+_68298430 NM_001076785 NM_003983 CR749291 CR749475 AK310866 BC028216	-11116	+	AB017494 TSC_hg19_v1_chr16_+_68279299 AY358425 EU832326	-30255	+	AK300596 AK074828 NM_012320 TSC_hg19_v1_chr16_+_68279275 AK296263 AK298494 AL110209 BC062605 AK001705 AK222790	-30316	+	TSC_hg19_v1_chr16_-_68344850 BC013778 AK023353 AK091674 AK225712 AY078070 NM_032178	35260	-	TSC_hg19_v1_chr16_+_68344946 NM_001184824 NM_019023 AK001502 AK304605 AK056647	35393	+	TSC_hg19_v1_chr16_-_68482409 AK289651 NM_018667 BC041828	172915	-	NM_001076785|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##NM_003983|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749291|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749475|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AK310866|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##BC028216|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AB017494|PLA2G15|23659|phospholipase A2, group XV##AY358425|PLA2G15|23659|phospholipase A2, group XV##EU832326|PLA2G15|23659|phospholipase A2, group XV##AK300596|PLA2G15|23659|phospholipase A2, group XV##AK074828|PLA2G15|23659|phospholipase A2, group XV##NM_012320|PLA2G15|23659|phospholipase A2, group XV##AK296263|PLA2G15|23659|phospholipase A2, group XV##AK298494|PLA2G15|23659|phospholipase A2, group XV##AL110209|PLA2G15|23659|phospholipase A2, group XV##BC062605|PLA2G15|23659|phospholipase A2, group XV##AK001705|PLA2G15|23659|phospholipase A2, group XV##AK222790|PLA2G15|23659|phospholipase A2, group XV##BC013778|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK023353|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK091674|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK225712|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AY078070|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_032178|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_001184824|PRMT7|54496|protein arginine methyltransferase 7##NM_019023|PRMT7|54496|protein arginine methyltransferase 7##AK001502|PRMT7|54496|protein arginine methyltransferase 7##AK304605|PRMT7|54496|protein arginine methyltransferase 7##AK056647|PRMT7|54496|protein arginine methyltransferase 7##AK289651|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_018667|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC041828|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	0.994679	0.0	
chr17	30846853	30847033	reg1008282.p2	5.761	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-32183	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-32346	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-32872	+	CU688936 AB385376 AB018270 BC146763 NM_015194	356952	-	TSC_hg19_v1_chr17_-_31204141 AK127942	357180	-	TSC_hg19_v1_chr17_-_31204196 BC030602	357270	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	0.809691	0.0	denovo_WM_7:-16:0.700
chr1	86855188	86855320	reg1007277.p2	5.761	+	BC116180 BC113654 BC117170 BC143715 BC143717 BC143718 AY244357 NM_152890	-233141	-	TSC_hg19_v1_chr1_-_86174088 AL442074 BC026236 AK298149 NM_001170670 NM_017953	-681141	-	EU446811 AK000767 TSC_hg19_v1_chr1_-_86174035 BC110898 AK314566	-681248	-	BC091490 TSC_hg19_v1_chr1_-_86862004 AB033055 BC047368 BC009779 BC012579 AK308351 AK302792 BC026105 AK303209 NM_001007022 NM_001184765 NM_001184766 NM_020729	6721	-	NM_006536 AF043977 AK296719 AK290348 AK307937 BC041096 AB026833 AF127980	34595	+	NM_001285 TSC_hg19_v1_chr1_+_86934607 AK314375 AK291999 AK097057 AF127036	79333	+	BC116180|COL24A1|255631|collagen, type XXIV, alpha 1##BC113654|COL24A1|255631|collagen, type XXIV, alpha 1##BC117170|COL24A1|255631|collagen, type XXIV, alpha 1##BC143715|COL24A1|255631|collagen, type XXIV, alpha 1##BC143717|COL24A1|255631|collagen, type XXIV, alpha 1##BC143718|COL24A1|255631|collagen, type XXIV, alpha 1##AY244357|COL24A1|255631|collagen, type XXIV, alpha 1##NM_152890|COL24A1|255631|collagen, type XXIV, alpha 1##AL442074|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC026236|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK298149|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_001170670|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_017953|ZNHIT6|54680|zinc finger, HIT-type containing 6##EU446811|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK000767|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC110898|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK314566|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC091490|ODF2L|57489|outer dense fiber of sperm tails 2-like##AB033055|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC047368|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC009779|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC012579|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK308351|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK302792|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC026105|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK303209|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001007022|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001184765|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001184766|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_020729|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_006536|CLCA2|9635|chloride channel accessory 2##AF043977|CLCA2|9635|chloride channel accessory 2##AK290348|CLCA2|9635|chloride channel accessory 2##AK307937|CLCA2|9635|chloride channel accessory 2##BC041096|CLCA2|9635|chloride channel accessory 2##AB026833|CLCA2|9635|chloride channel accessory 2##AF127980|CLCA2|9635|chloride channel accessory 2##NM_001285|CLCA1|1179|chloride channel accessory 1##AK314375|CLCA1|1179|chloride channel accessory 1##AK291999|CLCA1|1179|chloride channel accessory 1##AK097057|CLCA1|1179|chloride channel accessory 1##AF127036|CLCA1|1179|chloride channel accessory 1	1.096127	0.0	denovo_WM_7:0:0.723	denovo_WM_7:1:0.222
chr1	115124425	115124534	reg1007579.p2	5.760	+	AB451245 AB451369 AB528339 AF081788 BT019390 CR542037 CU675083 DQ892529 EU176700 EU832613 EU832684 TSC_hg19_v1_chr1_-_115124237 BC005285 BC012623 BC039238 AK222637 AK313141 BC022880 AB020623 NM_005872	-236	-	TSC_hg19_v1_chr1_-_115053767 AF119043 AF220136 AF220137 NM_015906 NM_033020	-70701	-	TSC_hg19_v1_chr1_-_115053724 AB384564 AB029036	-70769	-	TSC_hg19_v1_chr1_-_115212683 CR749576 BX647950 NM_198459	88201	-	AB527106 AK291349 AK314252 BC056678 TSC_hg19_v1_chr1_-_115238168 BC022290 M60092 AK097077 NM_000036 NM_001172626	113685	-	BC005219 TSC_hg19_v1_chr1_-_115259387	134905	-	AB451245|BCAS2|10286|breast carcinoma amplified sequence 2##AB451369|BCAS2|10286|breast carcinoma amplified sequence 2##AF081788|BCAS2|10286|breast carcinoma amplified sequence 2##BT019390|BCAS2|10286|breast carcinoma amplified sequence 2##CR542037|BCAS2|10286|breast carcinoma amplified sequence 2##DQ892529|BCAS2|10286|breast carcinoma amplified sequence 2##EU176700|BCAS2|10286|breast carcinoma amplified sequence 2##EU832613|BCAS2|10286|breast carcinoma amplified sequence 2##EU832684|BCAS2|10286|breast carcinoma amplified sequence 2##BC005285|BCAS2|10286|breast carcinoma amplified sequence 2##BC012623|BCAS2|10286|breast carcinoma amplified sequence 2##BC039238|BCAS2|10286|breast carcinoma amplified sequence 2##AK222637|BCAS2|10286|breast carcinoma amplified sequence 2##AK313141|BCAS2|10286|breast carcinoma amplified sequence 2##BC022880|BCAS2|10286|breast carcinoma amplified sequence 2##AB020623|BCAS2|10286|breast carcinoma amplified sequence 2##NM_005872|BCAS2|10286|breast carcinoma amplified sequence 2##AF119043|TRIM33|51592|tripartite motif containing 33##AF220136|TRIM33|51592|tripartite motif containing 33##AF220137|TRIM33|51592|tripartite motif containing 33##NM_015906|TRIM33|51592|tripartite motif containing 33##NM_033020|TRIM33|51592|tripartite motif containing 33##AB029036|TRIM33|51592|tripartite motif containing 33##CR749576|DENND2C|163259|DENN/MADD domain containing 2C##BX647950|DENND2C|163259|DENN/MADD domain containing 2C##NM_198459|DENND2C|163259|DENN/MADD domain containing 2C##AK291349|AMPD1|270|adenosine monophosphate deaminase 1##AK314252|AMPD1|270|adenosine monophosphate deaminase 1##BC056678|AMPD1|270|adenosine monophosphate deaminase 1##M60092|AMPD1|270|adenosine monophosphate deaminase 1##AK097077|AMPD1|270|adenosine monophosphate deaminase 1##NM_000036|AMPD1|270|adenosine monophosphate deaminase 1##NM_001172626|AMPD1|270|adenosine monophosphate deaminase 1##BC005219|NRAS|4893|neuroblastoma RAS viral (v-ras) oncogene homolog	0.0	0.0	
chr12	56696581	56696761	reg1005312.p2	5.759	+	NM_004077 TSC_hg19_v1_chr12_-_56694176	-2496	-	TSC_hg19_v1_chr12_-_56694158 BX640838 AF053631	-2527	-	TSC_hg19_v1_chr12_-_56694115 AK307625	-2553	-	TSC_hg19_v1_chr12_-_56709750 AF186113 AB015631 BC065015	13043	-	TSC_hg19_v1_chr12_-_56709793 BC001027 AK312921	13129	-	TSC_hg19_v1_chr12_-_56709831 AY032624 AY359102 NM_001190991 NM_014255	13308	-	NM_004077|CS|1431|citrate synthase##BX640838|CS|1431|citrate synthase##AF053631|CS|1431|citrate synthase##AK307625|CS|1431|citrate synthase##AF186113|CNPY2|10330|canopy 2 homolog (zebrafish)##AB015631|CNPY2|10330|canopy 2 homolog (zebrafish)##BC065015|CNPY2|10330|canopy 2 homolog (zebrafish)##BC001027|CNPY2|10330|canopy 2 homolog (zebrafish)##AK312921|CNPY2|10330|canopy 2 homolog (zebrafish)##AY032624|CNPY2|10330|canopy 2 homolog (zebrafish)##AY359102|CNPY2|10330|canopy 2 homolog (zebrafish)##NM_001190991|CNPY2|10330|canopy 2 homolog (zebrafish)##NM_014255|CNPY2|10330|canopy 2 homolog (zebrafish)	1.495614	0.0	denovo_WM_7:-48:0.889	denovo_WM_7:104:0.323
chr1	67883564	67883672	reg1007338.p1	5.759	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-110055	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-110537	+	AF461422 NM_144701	-251450	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	12405	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	12454	-	TSC_hg19_v1_chr1_-_67896086 AK312256	12467	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	1.020802	0.0	
chr8	55058993	55059108	reg1006406.p1	5.759	+	BC000891 NM_014175 TSC_hg19_v1_chr8_+_55047820 AF161494 AL136665 AK312832 AB528184 AM392964 CR533531	-11239	+	TSC_hg19_v1_chr8_-_55014465 CR457103 CU679013 DQ891527 DQ894717 BC010397 AF077198 AF077199 AF291053 AK307277 AK313739 AF081281 AK298206 AK289400 BC008652 AF052112 NM_006330	-44552	-	TSC_hg19_v1_chr8_-_54934990 NM_006756 NM_201437	-124031	-	AK025905 NM_022454 TSC_hg19_v1_chr8_+_55370494 BC030209 BC111770 BC111365	311466	+	AF141021 NM_006269 DQ980612 DQ980613 DQ980614 AF143222 AF146592 DQ980615	469602	+	BC106028 AY534241 NM_052898	955964	+	BC000891|MRPL15|29088|mitochondrial ribosomal protein L15##NM_014175|MRPL15|29088|mitochondrial ribosomal protein L15##AF161494|MRPL15|29088|mitochondrial ribosomal protein L15##AL136665|MRPL15|29088|mitochondrial ribosomal protein L15##AK312832|MRPL15|29088|mitochondrial ribosomal protein L15##AM392964|MRPL15|29088|mitochondrial ribosomal protein L15##CR533531|MRPL15|29088|mitochondrial ribosomal protein L15##CR457103|LYPLA1|10434|lysophospholipase I##DQ891527|LYPLA1|10434|lysophospholipase I##DQ894717|LYPLA1|10434|lysophospholipase I##BC010397|LYPLA1|10434|lysophospholipase I##AF077198|LYPLA1|10434|lysophospholipase I##AF077199|LYPLA1|10434|lysophospholipase I##AF291053|LYPLA1|10434|lysophospholipase I##AK307277|LYPLA1|10434|lysophospholipase I##AK313739|LYPLA1|10434|lysophospholipase I##AF081281|LYPLA1|10434|lysophospholipase I##AK298206|LYPLA1|10434|lysophospholipase I##AK289400|LYPLA1|10434|lysophospholipase I##BC008652|LYPLA1|10434|lysophospholipase I##AF052112|LYPLA1|10434|lysophospholipase I##NM_006330|LYPLA1|10434|lysophospholipase I##NM_006756|TCEA1|6917|transcription elongation factor A (SII), 1##NM_201437|TCEA1|6917|transcription elongation factor A (SII), 1##AK025905|SOX17|64321|SRY (sex determining region Y)-box 17##NM_022454|SOX17|64321|SRY (sex determining region Y)-box 17##BC030209|SOX17|64321|SRY (sex determining region Y)-box 17##BC111770|SOX17|64321|SRY (sex determining region Y)-box 17##BC111365|SOX17|64321|SRY (sex determining region Y)-box 17##AF141021|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##NM_006269|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980612|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980613|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980614|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF143222|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF146592|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980615|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AY534241|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4##NM_052898|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4	0.999132	0.0	denovo_WM_7:-32:0.239	denovo_WM_7:-33:0.239	denovo_WM_7:-34:0.239	denovo_WM_7:-35:0.239
chr11	47511387	47511567	reg1007025.p2	5.757	+	AK304430 AJ007988 DQ893717 AF248648 NM_001025596 NM_001172640 AF267533 AF267534	-930	-	AK310002 BC004196 Z33905 AF449218 NM_005055 NM_032645	-40769	-	BC106920 TSC_hg19_v1_chr11_-_47447991 BC073165 BC107804 BC008713 AK313518 NM_002804	-63496	-	BC031079 NM_198700	4595	-	AB210019 NM_001172639	34062	-	TSC_hg19_v1_chr11_-_47574683 BC036782 U63289	63166	-	AK304430|CELF1|10658|CUGBP, Elav-like family member 1##AJ007988|CELF1|10658|CUGBP, Elav-like family member 1##DQ893717|CELF1|10658|CUGBP, Elav-like family member 1##AF248648|CELF1|10658|CUGBP, Elav-like family member 1##NM_001025596|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172640|CELF1|10658|CUGBP, Elav-like family member 1##AF267533|CELF1|10658|CUGBP, Elav-like family member 1##AF267534|CELF1|10658|CUGBP, Elav-like family member 1##AK310002|RAPSN|5913|receptor-associated protein of the synapse##BC004196|RAPSN|5913|receptor-associated protein of the synapse##Z33905|RAPSN|5913|receptor-associated protein of the synapse##AF449218|RAPSN|5913|receptor-associated protein of the synapse##NM_005055|RAPSN|5913|receptor-associated protein of the synapse##NM_032645|RAPSN|5913|receptor-associated protein of the synapse##BC106920|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC073165|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC107804|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC008713|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##AK313518|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##NM_002804|PSMC3|5702|proteasome (prosome, macropain) 26S subunit, ATPase, 3##BC031079|CELF1|10658|CUGBP, Elav-like family member 1##NM_198700|CELF1|10658|CUGBP, Elav-like family member 1##AB210019|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172639|CELF1|10658|CUGBP, Elav-like family member 1##BC036782|CELF1|10658|CUGBP, Elav-like family member 1##U63289|CELF1|10658|CUGBP, Elav-like family member 1	0.991206	0.0	
chr8	2167092	2167243	reg1008763.p2	5.757	+	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-173965	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-214259	+	TSC_hg19_v1_chr8_+_1950340 BC169332	-216815	+	AK128880 TSC_hg19_v1_chr8_-_2585966	418815	-	AY017307 TSC_hg19_v1_chr8_-_4852228	2685058	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	2685127	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##BC169332|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	1.927729	0.0	denovo_WM_7:5:0.768	denovo_WM_7:-9:0.558	denovo_WM_7:-10:0.351
chr7	102383039	102383184	reg1005101.p2	5.756	+	BC056864 BC071870 TSC_hg19_v1_chr7_-_102312111 BC044209 BC050598 BC110985 BC086857 NM_032959	-70991	-	AK302217 NM_001031618 NM_001166339	-92340	+	EU341824 NM_001114403 AK296589	-99835	-	TSC_hg19_v1_chr7_+_102389473 NM_001145268 NM_001145269 BC029175 AK297455 AK298753 AK054745 DQ893359 DQ896678	6379	+	NM_001031692 NM_005824 TSC_hg19_v1_chr7_+_102553446 AK226021 AK225701 U32907 AK290305 BC027903 AY358889	170321	+	AK097537 NM_145032	331903	-	BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC086857|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_032959|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##EU341824|UPK3BL|100134938|uroplakin 3B-like##NM_001114403|UPK3BL|100134938|uroplakin 3B-like##NM_001145268|FAM185A|222234|family with sequence similarity 185, member A##NM_001145269|FAM185A|222234|family with sequence similarity 185, member A##BC029175|FAM185A|222234|family with sequence similarity 185, member A##AK297455|FAM185A|222234|family with sequence similarity 185, member A##AK298753|FAM185A|222234|family with sequence similarity 185, member A##AK054745|FAM185A|222234|family with sequence similarity 185, member A##DQ893359|FAM185A|222234|family with sequence similarity 185, member A##DQ896678|FAM185A|222234|family with sequence similarity 185, member A##NM_001031692|LRRC17|10234|leucine rich repeat containing 17##NM_005824|LRRC17|10234|leucine rich repeat containing 17##AK226021|LRRC17|10234|leucine rich repeat containing 17##AK225701|LRRC17|10234|leucine rich repeat containing 17##U32907|LRRC17|10234|leucine rich repeat containing 17##AK290305|LRRC17|10234|leucine rich repeat containing 17##BC027903|LRRC17|10234|leucine rich repeat containing 17##AY358889|LRRC17|10234|leucine rich repeat containing 17##AK097537|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_145032|FBXL13|222235|F-box and leucine-rich repeat protein 13	0.0	0.0	
chr7	35770082	35770243	reg1006583.p1	5.756	+	TSC_hg19_v1_chr7_-_35734795 NM_022373	-35384	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	-35423	-	TSC_hg19_v1_chr7_-_35734533 BC005091	-35566	-	NM_001011553 NM_001242956 NM_001788 TSC_hg19_v1_chr7_+_35840766 BC107718 AK290545	70548	+	TSC_hg19_v1_chr7_+_35840828 AB073389 AK223225 AK223241 AK297883 AK298453 BC025987 BX571755 S72008 BC093640 BC093642	70671	+	DQ232879 TSC_hg19_v1_chr7_+_35840853 BC067264 AK300601 AB209677	70690	+	NM_022373|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##BC005091|HERPUD2|64224|HERPUD family member 2##NM_001011553|SEPT7|989|septin 7##NM_001242956|SEPT7|989|septin 7##NM_001788|SEPT7|989|septin 7##BC107718|SEPT7|989|septin 7##AK290545|SEPT7|989|septin 7##AB073389|SEPT7|989|septin 7##AK223225|SEPT7|989|septin 7##AK223241|SEPT7|989|septin 7##AK297883|SEPT7|989|septin 7##AK298453|SEPT7|989|septin 7##BC025987|SEPT7|989|septin 7##BX571755|SEPT7|989|septin 7##S72008|SEPT7|989|septin 7##BC093640|SEPT7|989|septin 7##BC093642|SEPT7|989|septin 7##DQ232879|SEPT7|989|septin 7##BC067264|SEPT7|989|septin 7##AK300601|SEPT7|989|septin 7##AB209677|SEPT7|989|septin 7	0.0	0.0	
chr1	218684849	218684966	reg1006257.p1	5.755	+	M19154 TSC_hg19_v1_chr1_+_218519634	-165302	+	NM_001135599 NM_003238 TSC_hg19_v1_chr1_+_218518677 AB209842	-166196	+	AK290066 BC003668 TSC_hg19_v1_chr1_+_218458652 BC020641 AF151873	-226238	+	TSC_hg19_v1_chr1_+_219347170 NM_138794	662251	+	TSC_hg19_v1_chr1_+_219347219 AK123628 AK309689 AK291542 BC016711 AK129913 AY341430	662335	+	BC036078 TSC_hg19_v1_chr1_-_220101540	1416622	-	M19154|TGFB2|7042|transforming growth factor, beta 2##NM_001135599|TGFB2|7042|transforming growth factor, beta 2##NM_003238|TGFB2|7042|transforming growth factor, beta 2##AB209842|TGFB2|7042|transforming growth factor, beta 2##AK290066|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##BC003668|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##BC020641|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##AF151873|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##NM_138794|LYPLAL1|127018|lysophospholipase-like 1##AK123628|LYPLAL1|127018|lysophospholipase-like 1##AK309689|LYPLAL1|127018|lysophospholipase-like 1##AK291542|LYPLAL1|127018|lysophospholipase-like 1##BC016711|LYPLAL1|127018|lysophospholipase-like 1##AK129913|LYPLAL1|127018|lysophospholipase-like 1##AY341430|LYPLAL1|127018|lysophospholipase-like 1##BC036078|SLC30A10|55532|solute carrier family 30, member 10	0.991483	0.0	
chr2	238814651	238814764	reg1008805.p3	5.755	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	-46455	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	-107287	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-213632	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	60917	+	TSC_hg19_v1_chr2_+_238875673 AK290063	60973	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	60996	+	NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.998462	0.0	
chr3	10341602	10341770	reg1007809.p2	5.755	+	EF549557 EF549571 EF549572 EF549573 EF549574 EF549575 EU072083 EU072084 EU072085 EU072086 EU072087 EF549564 EF549566 EF549561 NM_001134944 NM_001134945 NM_001134946	-7071	-	BC025791 AJ252278 NM_001134941 NM_016362 AY359053 EF549567	-9210	-	TSC_hg19_v1_chr3_+_10290370 AK289794 BC090935 BC101776 BC101770	-51164	+	AF052155 NM_001136232 TSC_hg19_v1_chr3_-_10362765 L09260 BC002634 AK223019 EF036494	21061	-	AK294662 TSC_hg19_v1_chr3_-_10362797 BC091506 AK301999	21112	-	TSC_hg19_v1_chr3_-_10362861 NM_183352	21167	-	EF549557|GHRL|51738|ghrelin/obestatin prepropeptide##EF549571|GHRL|51738|ghrelin/obestatin prepropeptide##EF549572|GHRL|51738|ghrelin/obestatin prepropeptide##EF549573|GHRL|51738|ghrelin/obestatin prepropeptide##EF549574|GHRL|51738|ghrelin/obestatin prepropeptide##EF549575|GHRL|51738|ghrelin/obestatin prepropeptide##EU072083|GHRL|51738|ghrelin/obestatin prepropeptide##EU072084|GHRL|51738|ghrelin/obestatin prepropeptide##EU072085|GHRL|51738|ghrelin/obestatin prepropeptide##EU072086|GHRL|51738|ghrelin/obestatin prepropeptide##EU072087|GHRL|51738|ghrelin/obestatin prepropeptide##EF549564|GHRL|51738|ghrelin/obestatin prepropeptide##EF549566|GHRL|51738|ghrelin/obestatin prepropeptide##EF549561|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134944|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134945|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134946|GHRL|51738|ghrelin/obestatin prepropeptide##BC025791|GHRL|51738|ghrelin/obestatin prepropeptide##AJ252278|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134941|GHRL|51738|ghrelin/obestatin prepropeptide##NM_016362|GHRL|51738|ghrelin/obestatin prepropeptide##AY359053|GHRL|51738|ghrelin/obestatin prepropeptide##EF549567|GHRL|51738|ghrelin/obestatin prepropeptide##AK289794|TATDN2|9797|TatD DNase domain containing 2##BC090935|TATDN2|9797|TatD DNase domain containing 2##BC101776|TATDN2|9797|TatD DNase domain containing 2##BC101770|TATDN2|9797|TatD DNase domain containing 2##AF052155|SEC13|6396|SEC13 homolog (S. cerevisiae)##NM_001136232|SEC13|6396|SEC13 homolog (S. cerevisiae)##L09260|SEC13|6396|SEC13 homolog (S. cerevisiae)##BC002634|SEC13|6396|SEC13 homolog (S. cerevisiae)##AK223019|SEC13|6396|SEC13 homolog (S. cerevisiae)##EF036494|SEC13|6396|SEC13 homolog (S. cerevisiae)##AK294662|SEC13|6396|SEC13 homolog (S. cerevisiae)##BC091506|SEC13|6396|SEC13 homolog (S. cerevisiae)##AK301999|SEC13|6396|SEC13 homolog (S. cerevisiae)##NM_183352|SEC13|6396|SEC13 homolog (S. cerevisiae)	0.999674	0.0	denovo_WM_7:20:0.842
chr3	16883516	16883661	reg1008079.p1	5.755	+	U65918 U66726 U66078 BC027595 NM_001351	-236622	-	BX648638 AK303026 NM_001190811	-237318	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-328364	-	AB029015 NM_001144382	42863	+	BC036392 NM_015184	90993	+	AK310539 NM_001134381	857923	-	U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5	0.0	0.0	
chr2	231087656	231087775	reg1003348.p2	5.754	+	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	-3000	-	BC065524 BC034382 AK055356 TSC_hg19_v1_chr2_-_230933641 NM_152527	-154049	-	TSC_hg19_v1_chr2_+_230787218 BC017869 BC022538 NM_174899 BC033935 AK289655 AK309702	-300498	+	AK301097 NM_001185015	2728	-	AK301317 AK301267 NM_001005176 NM_007237 U36499 U36500 U63420 BC105744 BC105960 BC105743 BC054890 BC070160 BC038091	2748	+	TSC_hg19_v1_chr2_+_231191907 NM_138402	104211	+	AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##BC065524|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC034382|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##AK055356|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##NM_152527|SLC16A14|151473|solute carrier family 16, member 14 (monocarboxylic acid transporter 14)##BC017869|FBXO36|130888|F-box protein 36##BC022538|FBXO36|130888|F-box protein 36##NM_174899|FBXO36|130888|F-box protein 36##BC033935|FBXO36|130888|F-box protein 36##AK289655|FBXO36|130888|F-box protein 36##AK309702|FBXO36|130888|F-box protein 36##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein##AK301317|SP140|11262|SP140 nuclear body protein##AK301267|SP140|11262|SP140 nuclear body protein##NM_001005176|SP140|11262|SP140 nuclear body protein##NM_007237|SP140|11262|SP140 nuclear body protein##U36499|SP140|11262|SP140 nuclear body protein##U36500|SP140|11262|SP140 nuclear body protein##U63420|SP140|11262|SP140 nuclear body protein##BC105744|SP140|11262|SP140 nuclear body protein##BC105960|SP140|11262|SP140 nuclear body protein##BC105743|SP140|11262|SP140 nuclear body protein##BC054890|SP140|11262|SP140 nuclear body protein##BC070160|SP140|11262|SP140 nuclear body protein##BC038091|SP140|11262|SP140 nuclear body protein##NM_138402|SP140L|93349|SP140 nuclear body protein-like	0.998338	0.0	denovo_WM_7:46:0.457	denovo_WM_7:47:0.457
chr7	107783336	107783505	reg1009005.p2	5.754	+	BC142619 BC140804 BC144591 AF028816 AK300385 NM_007356	-12628	-	AB384752 TSC_hg19_v1_chr7_-_107643594 BC113455 M61916 BX648251 AK303501 AK309921 AK307611 BC044633 BC052598 NM_002291	-139815	-	AK300077 TSC_hg19_v1_chr7_+_107531630 AK225289 AK310220 AB209703 BC018648 BC018696 J03620 AB529125 CU676276	-251764	+	AJ001057 AB385311 NM_001037132	97132	-	TSC_hg19_v1_chr7_-_108096830 BC114570 BC115736 AB002341 BX538010 AK299870 BC098401 NM_001193582 NM_001193583 NM_001193584 NM_005010	313509	-	TSC_hg19_v1_chr7_-_108142934 BC005203 AK002115	359552	-	BC142619|LAMB4|22798|laminin, beta 4##BC140804|LAMB4|22798|laminin, beta 4##BC144591|LAMB4|22798|laminin, beta 4##AF028816|LAMB4|22798|laminin, beta 4##AK300385|LAMB4|22798|laminin, beta 4##NM_007356|LAMB4|22798|laminin, beta 4##BC113455|LAMB1|3912|laminin, beta 1##M61916|LAMB1|3912|laminin, beta 1##BX648251|LAMB1|3912|laminin, beta 1##AK303501|LAMB1|3912|laminin, beta 1##AK309921|LAMB1|3912|laminin, beta 1##AK307611|LAMB1|3912|laminin, beta 1##BC044633|LAMB1|3912|laminin, beta 1##BC052598|LAMB1|3912|laminin, beta 1##NM_002291|LAMB1|3912|laminin, beta 1##AK300077|DLD|1738|dihydrolipoamide dehydrogenase##AK225289|DLD|1738|dihydrolipoamide dehydrogenase##AK310220|DLD|1738|dihydrolipoamide dehydrogenase##AB209703|DLD|1738|dihydrolipoamide dehydrogenase##BC018648|DLD|1738|dihydrolipoamide dehydrogenase##BC018696|DLD|1738|dihydrolipoamide dehydrogenase##J03620|DLD|1738|dihydrolipoamide dehydrogenase##AJ001057|NRCAM|4897|neuronal cell adhesion molecule##NM_001037132|NRCAM|4897|neuronal cell adhesion molecule##BC114570|NRCAM|4897|neuronal cell adhesion molecule##BC115736|NRCAM|4897|neuronal cell adhesion molecule##AB002341|NRCAM|4897|neuronal cell adhesion molecule##BX538010|NRCAM|4897|neuronal cell adhesion molecule##AK299870|NRCAM|4897|neuronal cell adhesion molecule##BC098401|NRCAM|4897|neuronal cell adhesion molecule##NM_001193582|NRCAM|4897|neuronal cell adhesion molecule##NM_001193583|NRCAM|4897|neuronal cell adhesion molecule##NM_001193584|NRCAM|4897|neuronal cell adhesion molecule##NM_005010|NRCAM|4897|neuronal cell adhesion molecule##BC005203|PNPLA8|50640|patatin-like phospholipase domain containing 8##AK002115|PNPLA8|50640|patatin-like phospholipase domain containing 8	0.231446	0.0	
chr9	33142536	33142702	reg1003374.p1	5.754	+	TSC_hg19_v1_chr9_-_33076673 NM_018225	-65927	-	CU678268 DQ893005 DQ896251 TSC_hg19_v1_chr9_-_33076667 AK001667 BC002876 EF011613 AK225587 AK304767 AK225559	-65982	-	BT007292 CU678881 DQ891091 EU176556 TSC_hg19_v1_chr9_+_33026519	-116119	+	TSC_hg19_v1_chr9_-_33167158 AK316294	24505	-	AB590749 X55415 TSC_hg19_v1_chr9_-_33167196 AK296928 AK312797	24567	-	D29805 X13223 X14085 M22921 U10474 TSC_hg19_v1_chr9_-_33167262	24628	-	NM_018225|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##DQ893005|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##DQ896251|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK001667|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##BC002876|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##EF011613|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK225587|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK304767|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##AK225559|SMU1|55234|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)##BT007292|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##DQ891091|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##EU176556|DNAJA1|3301|DnaJ (Hsp40) homolog, subfamily A, member 1##AK316294|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X55415|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AK296928|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AK312797|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##D29805|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X13223|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##X14085|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##M22921|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##U10474|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	0.977741	0.0	denovo_WM_7:0:0.545
chr14	71067137	71067302	reg1006715.p1	5.753	+	BC025378 NM_003814	-65488	-	NM_003813	-148346	+	AB527912 TSC_hg19_v1_chr14_-_70883770 BC007704 AK002133 AK311719 NM_001202547 NM_001202548 NM_001202549 NM_018373	-183463	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	141	-	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	158	-	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	41390	+	BC025378|ADAM20|8748|ADAM metallopeptidase domain 20##NM_003814|ADAM20|8748|ADAM metallopeptidase domain 20##NM_003813|ADAM21|8747|ADAM metallopeptidase domain 21##BC007704|SYNJ2BP|55333|synaptojanin 2 binding protein##AK002133|SYNJ2BP|55333|synaptojanin 2 binding protein##AK311719|SYNJ2BP|55333|synaptojanin 2 binding protein##NM_001202547|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_001202548|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_001202549|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_018373|SYNJ2BP|55333|synaptojanin 2 binding protein##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9	0.990343	0.0	denovo_WM_7:-57:0.930
chr19	10523523	10523637	reg1006499.p2	5.753	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-9324	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-9367	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	-9411	-	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	3923	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	7650	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	17847	+	NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.989333	0.0	denovo_WM_7:35:0.243	denovo_WM_7:36:0.243	denovo_WM_7:37:0.243	denovo_WM_7:38:0.243
chr5	133978849	133979029	reg1001830.p1	5.753	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	-10442	-	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-117134	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-117576	+	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	5492	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	95371	+	NM_014829 TSC_hg19_v1_chr5_+_134094470 AK126011 AK291788 BC105598 AF106680 AB018344 BC012304 CU680282	115604	+	BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand##NM_014829|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK126011|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK291788|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC105598|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AF106680|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AB018344|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC012304|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.0	0.0	
chr8	33125821	33125974	reg1008907.p2	5.752	+	TSC_hg19_v1_chr8_+_32785485 BC034319	-340408	+	NM_001159996 AK293270 AK293240	-546505	+	AK289927 NM_013959	-621647	+	TSC_hg19_v1_chr8_-_33330616 BC004884	204716	-	AK098505 AK297132 TSC_hg19_v1_chr8_-_33330636 AK303231 AJ512465 AJ535838 AJ535839 AK292993 AJ582015 NM_032664	204749	-	NM_032509 TSC_hg19_v1_chr8_+_33342703 AK314491 AK225476 AK027469 BC015965 AF251062 BC039740 BC028230 BC050528 CU690708	216807	+	NM_001159996|NRG1|3084|neuregulin 1##AK293270|NRG1|3084|neuregulin 1##AK293240|NRG1|3084|neuregulin 1##AK289927|NRG1|3084|neuregulin 1##NM_013959|NRG1|3084|neuregulin 1##BC004884|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK098505|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK297132|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK303231|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ512465|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535838|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535839|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK292993|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ582015|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##NM_032664|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##NM_032509|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK314491|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK225476|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK027469|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC015965|MAK16|84549|MAK16 homolog (S. cerevisiae)##AF251062|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC039740|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC028230|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC050528|MAK16|84549|MAK16 homolog (S. cerevisiae)	0.952172	0.0	denovo_WM_7:-11:0.756
chr14	50160298	50160436	reg1006204.p1	5.751	+	BC101595 BC101597 BC143596 BC143597 NM_172193 AK098735 BC031270 AF111806 AK127202	-505	+	NM_001197330 NM_001197331 NM_002692 TSC_hg19_v1_chr14_-_50155123	-5248	-	AB590929 HQ258453 TSC_hg19_v1_chr14_-_50154933 BC112962 AK293163 AK314963 AF036899 BX248064 BC126218 BC126220	-5395	-	TSC_hg19_v1_chr14_+_50234282 AK056298	73936	+	TSC_hg19_v1_chr14_+_50234849 NM_014315 AF244137 BC002335 BC024192 AK001771 BX161429	74470	+	TSC_hg19_v1_chr14_+_50234917 AF113131	74554	+	BC101595|KLHDC1|122773|kelch domain containing 1##BC101597|KLHDC1|122773|kelch domain containing 1##BC143596|KLHDC1|122773|kelch domain containing 1##BC143597|KLHDC1|122773|kelch domain containing 1##NM_172193|KLHDC1|122773|kelch domain containing 1##BC031270|KLHDC1|122773|kelch domain containing 1##AF111806|KLHDC1|122773|kelch domain containing 1##AK127202|KLHDC1|122773|kelch domain containing 1##NM_001197330|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_001197331|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_002692|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##HQ258453|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC112962|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK293163|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK314963|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AF036899|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BX248064|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC126218|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC126220|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK056298|KLHDC2|23588|kelch domain containing 2##NM_014315|KLHDC2|23588|kelch domain containing 2##AF244137|KLHDC2|23588|kelch domain containing 2##BC002335|KLHDC2|23588|kelch domain containing 2##BC024192|KLHDC2|23588|kelch domain containing 2##AK001771|KLHDC2|23588|kelch domain containing 2##BX161429|KLHDC2|23588|kelch domain containing 2##AF113131|KLHDC2|23588|kelch domain containing 2	0.941699	0.0	
chr7	537620	537734	reg1005804.p2	5.751	+	NM_001195127	-207542	+	BC040074 TSC_hg19_v1_chr7_+_193137	-344532	+	AF533706 NM_020223 TSC_hg19_v1_chr7_+_193043	-344660	+	TSC_hg19_v1_chr7_-_558849 AK292217	21157	-	X03795 X06374 TSC_hg19_v1_chr7_-_559093	21387	-	TSC_hg19_v1_chr7_-_559484 NM_002607 NM_033023	21808	-	NM_001195127|LOC100288524|100288524|forkhead box L1-like##BC040074|FAM20C|56975|family with sequence similarity 20, member C##AF533706|FAM20C|56975|family with sequence similarity 20, member C##NM_020223|FAM20C|56975|family with sequence similarity 20, member C##AK292217|PDGFA|5154|platelet-derived growth factor alpha polypeptide##X03795|PDGFA|5154|platelet-derived growth factor alpha polypeptide##X06374|PDGFA|5154|platelet-derived growth factor alpha polypeptide##NM_002607|PDGFA|5154|platelet-derived growth factor alpha polypeptide##NM_033023|PDGFA|5154|platelet-derived growth factor alpha polypeptide	2.971195	0.0	denovo_WM_7:-50:0.593	denovo_WM_7:-70:0.363	denovo_WM_7:-71:0.235	denovo_WM_7:-91:0.206	denovo_WM_7:-92:0.212
chr15	59541655	59541776	reg1005882.p1	5.750	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-42663	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-144344	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-182637	+	AB290177 TSC_hg19_v1_chr15_-_59665055	123339	-	TSC_hg19_v1_chr15_-_59665065 AK291688	123351	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	123355	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	0.998582	0.0	denovo_WM_7:-83:0.494	denovo_WM_7:-84:0.494
chr20	47333982	47334157	reg1007425.p1	5.750	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-918751	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-919317	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-1203385	+	AB037836 TSC_hg19_v1_chr20_-_47444291	110217	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	110370	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	204249	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	1.039261	0.0	denovo_WM_7:-26:0.735
chr2	96867101	96867259	reg1007498.p1	5.750	+	TSC_hg19_v1_chr2_-_96811180 BC007771 L11329 NM_004418	-56021	-	TSC_hg19_v1_chr2_-_96810943 EU832639 EU832716	-56226	-	BC107126 AJ537600 BC107127 NM_001002036	-63007	-	AK054615 CU680552 AK291190 TSC_hg19_v1_chr2_-_96874010 AB527627	6875	-	TSC_hg19_v1_chr2_+_96874144 AK311432	6974	+	AF270647 TSC_hg19_v1_chr2_-_96874561 BC012774 BC014076 BC012793 BC007894 BC009998 BC032106 BC014274 BC003028 BC008894 BC013279	7354	-	BC007771|DUSP2|1844|dual specificity phosphatase 2##L11329|DUSP2|1844|dual specificity phosphatase 2##NM_004418|DUSP2|1844|dual specificity phosphatase 2##EU832639|DUSP2|1844|dual specificity phosphatase 2##EU832716|DUSP2|1844|dual specificity phosphatase 2##BC107126|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##AJ537600|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##BC107127|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##NM_001002036|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##AK054615|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AK291190|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AF270647|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012774|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014076|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012793|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC007894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC009998|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC032106|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014274|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC003028|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC008894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC013279|STARD7|56910|StAR-related lipid transfer (START) domain containing 7	0.994707	0.0	denovo_WM_7:-21:0.239	denovo_WM_7:-22:0.239	denovo_WM_7:-23:0.239	denovo_WM_7:-24:0.239
chr6	44226376	44226510	reg1007286.p1	5.750	+	AK307572 AY491520 DQ893314 DQ896628 DQ896632 EU176354 AB106538 TSC_hg19_v1_chr6_-_44225250 AK075456 AB097021 AB097039 AK123749 AK293344 BC024288 AK293251 NM_178148	-1278	-	BC014485 TSC_hg19_v1_chr6_+_44214855 BC007327 AL136543	-11570	+	TSC_hg19_v1_chr6_+_44214837 BC068474 AK312255 AY359878 BC016753 AK294643 AK297367 D28342 BX649079 BC004928 BC012807 M16660 NM_007355	-11626	+	TSC_hg19_v1_chr6_-_44233257 BC011676 BC063609 AK301360	6821	-	AB590964 NM_004556 U91616	7068	-	NM_001137560 TSC_hg19_v1_chr6_+_44238533 BC040881	12088	+	AK307572|SLC35B2|347734|solute carrier family 35, member B2##AY491520|SLC35B2|347734|solute carrier family 35, member B2##DQ893314|SLC35B2|347734|solute carrier family 35, member B2##DQ896628|SLC35B2|347734|solute carrier family 35, member B2##DQ896632|SLC35B2|347734|solute carrier family 35, member B2##EU176354|SLC35B2|347734|solute carrier family 35, member B2##AB106538|SLC35B2|347734|solute carrier family 35, member B2##AK075456|SLC35B2|347734|solute carrier family 35, member B2##AB097021|SLC35B2|347734|solute carrier family 35, member B2##AB097039|SLC35B2|347734|solute carrier family 35, member B2##AK123749|SLC35B2|347734|solute carrier family 35, member B2##AK293344|SLC35B2|347734|solute carrier family 35, member B2##BC024288|SLC35B2|347734|solute carrier family 35, member B2##AK293251|SLC35B2|347734|solute carrier family 35, member B2##NM_178148|SLC35B2|347734|solute carrier family 35, member B2##BC014485|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BC007327|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##AL136543|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BC068474|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##AK312255|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##AY359878|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BC016753|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##AK294643|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##AK297367|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BX649079|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BC004928|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BC012807|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##M16660|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##NM_007355|HSP90AB1|3326|heat shock protein 90kDa alpha (cytosolic), class B member 1##BC011676|NFKBIE|4794|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon##BC063609|NFKBIE|4794|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon##AK301360|NFKBIE|4794|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon##NM_004556|NFKBIE|4794|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon##U91616|NFKBIE|4794|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon##NM_001137560|TMEM151B|441151|transmembrane protein 151B	0.0	0.0	
chr10	119788363	119788543	reg1008402.p2	5.749	+	TSC_hg19_v1_chr10_+_119302713 AB463605	-485710	+	AF301598 NM_001165924 NM_004098	-486498	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-486537	-	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	17591	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	17977	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	313371	-	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A	1.732631	0.0	denovo_WM_7:57:0.322	denovo_WM_7:58:0.451	denovo_WM_7:89:0.218	denovo_WM_7:90:0.249	denovo_WM_7:93:0.378
chr11	60828917	60829048	reg1001595.p2	5.749	+	NM_006725 TSC_hg19_v1_chr11_+_60739236 AK128419 AK312749 BC078669 BC033755 X60992 AK292704 DQ786329 DQ786330 U66142 U66145 U66146	-89757	+	BC037974 BC025710 AF135600 AB020598 NM_016582	-109796	-	TSC_hg19_v1_chr11_+_60691945 NM_017870 NM_178031 AK000546 BC114569 BC032059	-137047	+	NM_014207 AY541703 TSC_hg19_v1_chr11_+_60869960 AK292698 X04391 BC027901 DQ892077 DQ895270	40997	+	BC141827 BC142702 AK097326 TSC_hg19_v1_chr11_-_60928910 NM_017966 AL834261 AK302384	99948	-	NM_001079807 AK301286 AK301293 AK301305 AK312941 AK125628 AK225669 AK225679 AK291864 BC150659 BC171808 BC171814 BC171815 BC171910 BC171920 AB528778	142026	+	NM_006725|CD6|923|CD6 molecule##AK128419|CD6|923|CD6 molecule##AK312749|CD6|923|CD6 molecule##BC078669|CD6|923|CD6 molecule##BC033755|CD6|923|CD6 molecule##X60992|CD6|923|CD6 molecule##AK292704|CD6|923|CD6 molecule##DQ786329|CD6|923|CD6 molecule##DQ786330|CD6|923|CD6 molecule##U66142|CD6|923|CD6 molecule##U66145|CD6|923|CD6 molecule##U66146|CD6|923|CD6 molecule##BC037974|SLC15A3|51296|solute carrier family 15, member 3##BC025710|SLC15A3|51296|solute carrier family 15, member 3##AF135600|SLC15A3|51296|solute carrier family 15, member 3##AB020598|SLC15A3|51296|solute carrier family 15, member 3##NM_016582|SLC15A3|51296|solute carrier family 15, member 3##NM_017870|TMEM132A|54972|transmembrane protein 132A##NM_178031|TMEM132A|54972|transmembrane protein 132A##AK000546|TMEM132A|54972|transmembrane protein 132A##BC114569|TMEM132A|54972|transmembrane protein 132A##BC032059|TMEM132A|54972|transmembrane protein 132A##NM_014207|CD5|921|CD5 molecule##AY541703|CD5|921|CD5 molecule##AK292698|CD5|921|CD5 molecule##X04391|CD5|921|CD5 molecule##BC027901|CD5|921|CD5 molecule##DQ892077|CD5|921|CD5 molecule##DQ895270|CD5|921|CD5 molecule##BC141827|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##BC142702|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK097326|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_017966|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AL834261|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK302384|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_001079807|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301286|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301293|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301305|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK312941|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK125628|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225669|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225679|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK291864|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC150659|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171808|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171814|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171815|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##BC171910|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171920|PGA4|643847|pepsinogen 4, group I (pepsinogen A)	0.0	0.0	
chr15	97684690	97684813	reg1007505.p1	5.749	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-358079	+	NM_001145157	-808183	+	AK316086 NM_001145156	-808958	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	819168	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	819200	+	AK097062 AK097062 NM_182562	1372859	-	AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B	0.0	0.0	
chr19	14126339	14126519	reg1007284.p1	5.749	+	BC049826 TSC_hg19_v1_chr19_-_14117133 AK309824 NM_002918	-9300	-	TSC_hg19_v1_chr19_-_14116878 X58964	-9515	-	AK027100 AK298489 NM_001146254 NM_001146255	-62232	-	BC140935 AB076563 AF447451 BC110069 NM_080864	12558	+	NM_004843	15832	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	16085	+	BC049826|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK309824|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##NM_002918|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##X58964|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK027100|PODNL1|79883|podocan-like 1##AK298489|PODNL1|79883|podocan-like 1##NM_001146254|PODNL1|79883|podocan-like 1##NM_001146255|PODNL1|79883|podocan-like 1##BC140935|RLN3|117579|relaxin 3##AB076563|RLN3|117579|relaxin 3##AF447451|RLN3|117579|relaxin 3##BC110069|RLN3|117579|relaxin 3##NM_080864|RLN3|117579|relaxin 3##NM_004843|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha	0.0	0.0	
chr1	161005157	161005292	reg1005926.p1	5.748	+	TSC_hg19_v1_chr1_-_160990981 NM_016946	-14173	-	BT020103 CR533512 DQ892228 DQ895428 EU831648 EU831732 AB528601 AF207907 AK304412 TSC_hg19_v1_chr1_-_160990931 BC001533 AY358896 AK026665 AF154005 AK075152 AL136649	-14326	-	HQ258193 AY065973 AY358905 NM_080878 BC117225 BC143339 BC143341	-80665	-	AF191495 TSC_hg19_v1_chr1_-_161008713 BC001699 BC038219	3490	-	AF111713 TSC_hg19_v1_chr1_-_161008767 NM_001113205 NM_001113206 NM_001113207 AK299487	3534	-	AK314876 BC035505 TSC_hg19_v1_chr1_-_161015745	10493	-	NM_016946|F11R|50848|F11 receptor##BT020103|F11R|50848|F11 receptor##CR533512|F11R|50848|F11 receptor##DQ892228|F11R|50848|F11 receptor##DQ895428|F11R|50848|F11 receptor##EU831648|F11R|50848|F11 receptor##EU831732|F11R|50848|F11 receptor##AF207907|F11R|50848|F11 receptor##AK304412|F11R|50848|F11 receptor##BC001533|F11R|50848|F11 receptor##AY358896|F11R|50848|F11 receptor##AK026665|F11R|50848|F11 receptor##AF154005|F11R|50848|F11 receptor##AK075152|F11R|50848|F11 receptor##AL136649|F11R|50848|F11 receptor##HQ258193|ITLN2|142683|intelectin 2##AY065973|ITLN2|142683|intelectin 2##AY358905|ITLN2|142683|intelectin 2##NM_080878|ITLN2|142683|intelectin 2##BC117225|ITLN2|142683|intelectin 2##BC143339|ITLN2|142683|intelectin 2##BC143341|ITLN2|142683|intelectin 2##BC001699|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##BC038219|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113205|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113206|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113207|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##AK299487|F11R|50848|F11 receptor##AK314876|USF1|7391|upstream transcription factor 1##BC035505|USF1|7391|upstream transcription factor 1	1.00205	0.0	denovo_WM_7:69:0.331	denovo_WM_7:70:0.331	denovo_WM_7:71:0.331
chr14	97176645	97176784	reg1006841.p2	5.748	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-207930	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-207968	+	TSC_hg19_v1_chr14_+_96968718 NM_001252006 NM_001252007 NM_032632 AK302406 BC036014	-208005	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	87001	+	AK098639 NM_182560	2001235	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	2560903	-	BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##NM_001252006|PAPOLA|10914|poly(A) polymerase alpha##NM_001252007|PAPOLA|10914|poly(A) polymerase alpha##NM_032632|PAPOLA|10914|poly(A) polymerase alpha##AK302406|PAPOLA|10914|poly(A) polymerase alpha##BC036014|PAPOLA|10914|poly(A) polymerase alpha##NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	1.426461	0.0	denovo_WM_7:-16:0.238	denovo_WM_7:17:0.796
chr16	4303666	4303732	reg1008718.p2	5.748	+	AL831973 AL832361 BX647476 AK056588 NM_001098814	-11633	-	AJ133123 NM_001116 TSC_hg19_v1_chr16_-_4166252	-137469	-	BC151207 AB011092 BC151229 TSC_hg19_v1_chr16_-_4166045	-137665	-	TSC_hg19_v1_chr16_-_4303791 AK094828	82	-	X57435 DQ893617 DQ895293 CR541726 CU679751 AB464303 TSC_hg19_v1_chr16_-_4322885 BC010576	19129	-	NM_003223 S73885 TSC_hg19_v1_chr16_-_4323025	19313	-	AL831973|SRL|6345|sarcalumenin##AL832361|SRL|6345|sarcalumenin##BX647476|SRL|6345|sarcalumenin##AK056588|SRL|6345|sarcalumenin##NM_001098814|SRL|6345|sarcalumenin##AJ133123|ADCY9|115|adenylate cyclase 9##NM_001116|ADCY9|115|adenylate cyclase 9##BC151207|ADCY9|115|adenylate cyclase 9##AB011092|ADCY9|115|adenylate cyclase 9##BC151229|ADCY9|115|adenylate cyclase 9##AK094828|LOC100507501|100507501|uncharacterized LOC100507501##X57435|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ893617|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ895293|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##CR541726|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##BC010576|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##NM_003223|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##S73885|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)	0.0	0.0	
chr16	81773826	81774006	reg1000334.p1	5.748	+	AY172689 NM_030629	-244963	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	-295083	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-425266	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	38981	+	TSC_hg19_v1_chr16_+_81812901 AB208914	38986	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	39014	+	AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	0.0	0.0	
chr5	30324223	30324395	reg1008651.p1	5.748	+	TSC_hg19_v1_chr5_+_27472410 BC039509 BC046201 BC101438 BC101441 BC101982 BC122523	-2851906	+	BC107594 BC109384 BC113745 AB035302 AK307779 NM_016279 AK308697	-3285638	-	NM_006727	-5679225	-	NM_004932 TSC_hg19_v1_chr5_+_31193792 AK291290	869487	+	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	869568	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	1207913	-	BC039509|LOC643401|643401|uncharacterized LOC643401##BC046201|LOC643401|643401|uncharacterized LOC643401##BC101438|LOC643401|643401|uncharacterized LOC643401##BC101982|LOC643401|643401|uncharacterized LOC643401##BC122523|LOC643401|643401|uncharacterized LOC643401##BC107594|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC109384|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC113745|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AB035302|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK307779|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_016279|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK308697|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_006727|CDH10|1008|cadherin 10, type 2 (T2-cadherin)##NM_004932|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK291290|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III	0.996168	0.0	
chr14	88234097	88234206	reg1008502.p2	5.747	+	TSC_hg19_v1_chr14_+_85999692 AK297248	-2234566	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	-2237610	+	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	-2237678	+	DQ891232 DQ894416 TSC_hg19_v1_chr14_-_88459468 BC036518	225312	-	TSC_hg19_v1_chr14_-_88459523 D25283 D25284 AK296530 L23116 AK294040 NM_000153 NM_001201401	225408	-	NM_001201402	225857	-	BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##DQ891232|GALC|2581|galactosylceramidase##DQ894416|GALC|2581|galactosylceramidase##BC036518|GALC|2581|galactosylceramidase##D25283|GALC|2581|galactosylceramidase##D25284|GALC|2581|galactosylceramidase##AK296530|GALC|2581|galactosylceramidase##L23116|GALC|2581|galactosylceramidase##AK294040|GALC|2581|galactosylceramidase##NM_000153|GALC|2581|galactosylceramidase##NM_001201401|GALC|2581|galactosylceramidase##NM_001201402|GALC|2581|galactosylceramidase	0.945328	0.0	denovo_WM_7:17:0.739
chr9	116036769	116036926	reg1008365.p1	5.747	+	TSC_hg19_v1_chr9_+_115983867 AK129613 AK222866 AL831843 BC013611 BC061924	-52976	+	NM_001859 TSC_hg19_v1_chr9_+_115983846 U83460 AK292511	-53013	+	AB385371 TSC_hg19_v1_chr9_-_115983577 AK307498 AB014574 BC009609 AK303074 NM_015258	-53264	-	TSC_hg19_v1_chr9_-_116037689 AK307507	854	-	BC042534 BC066300 TSC_hg19_v1_chr9_-_116037865 NM_139286	998	-	NM_001244926 NM_004697 TSC_hg19_v1_chr9_+_116037937 AK225056 U82756	1084	+	AK129613|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK222866|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AL831843|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##BC013611|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##BC061924|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##NM_001859|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##U83460|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK292511|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK307498|FKBP15|23307|FK506 binding protein 15, 133kDa##AB014574|FKBP15|23307|FK506 binding protein 15, 133kDa##BC009609|FKBP15|23307|FK506 binding protein 15, 133kDa##AK303074|FKBP15|23307|FK506 binding protein 15, 133kDa##NM_015258|FKBP15|23307|FK506 binding protein 15, 133kDa##AK307507|FKBP15|23307|FK506 binding protein 15, 133kDa##BC042534|CDC26|246184|cell division cycle 26 homolog (S. cerevisiae)##BC066300|CDC26|246184|cell division cycle 26 homolog (S. cerevisiae)##NM_139286|CDC26|246184|cell division cycle 26 homolog (S. cerevisiae)##NM_001244926|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)##NM_004697|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)##AK225056|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)##U82756|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)	0.0	0.797323	CTCF.p2:24:0.797
chr14	35908631	35908769	reg1000933.p2	5.746	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	-34776	-	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	-147057	+	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	-147129	+	AF260323 NM_032594 BC130377 BC130379 TSC_hg19_v1_chr14_+_36003369 AB037912 AK096639	94609	+	AB511280 BC150596 TSC_hg19_v1_chr14_-_36278252	369447	-	TSC_hg19_v1_chr14_-_36278433 AY596970 AY596971 NM_014990 NM_194301	369695	-	BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AF260323|INSM2|84684|insulinoma-associated 2##NM_032594|INSM2|84684|insulinoma-associated 2##BC130377|INSM2|84684|insulinoma-associated 2##BC130379|INSM2|84684|insulinoma-associated 2##AB037912|INSM2|84684|insulinoma-associated 2##AK096639|INSM2|84684|insulinoma-associated 2##AB511280|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BC150596|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596970|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596971|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_014990|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_194301|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)	0.0	0.0	
chr18	52993571	52993729	reg1008386.p1	5.746	+	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	-4648	-	FR748222 NM_001243236	-23868	-	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-366963	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	75188	-	FR748208 TSC_hg19_v1_chr18_-_53068947	75294	-	AK095041 NM_001243232	77575	-	M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4##AK095041|TCF4|6925|transcription factor 4##NM_001243232|TCF4|6925|transcription factor 4	1.99134	0.0	denovo_WM_7:5:0.955	denovo_WM_7:-9:0.973
chr6	12608413	12608538	reg1006056.p1	5.746	+	TSC_hg19_v1_chr6_+_12514301 D28417	-94173	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	-317882	+	NM_002114	-595752	+	AK295263 TSC_hg19_v1_chr6_+_12716998	108468	+	AK290017 NM_001242648 NM_030948 TSC_hg19_v1_chr6_+_12717049	108568	+	AK091836 AX747210 NM_001242698	687342	-	NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1##AK290017|PHACTR1|221692|phosphatase and actin regulator 1##NM_001242648|PHACTR1|221692|phosphatase and actin regulator 1##NM_030948|PHACTR1|221692|phosphatase and actin regulator 1##AK091836|LOC100130357|100130357|uncharacterized LOC100130357##NM_001242698|LOC100130357|100130357|uncharacterized LOC100130357	0.993725	0.0	denovo_WM_7:-7:0.354	denovo_WM_7:-8:0.340	denovo_WM_7:-9:0.271
chr9	33295695	33295840	reg1007594.p2	5.746	+	TSC_hg19_v1_chr9_+_33290543 AK225750 BC012151 AB385216 DQ893676 DQ895843	-5214	+	NM_002504 NM_147133 NM_147134 TSC_hg19_v1_chr9_+_33290509 AF332009 AK291643 AL832342	-5293	+	TSC_hg19_v1_chr9_+_33265046 BC006974 BC020796 AF132968 AF161525 AB528724 CU675479 DQ893179 DQ896479 DQ896480	-30708	+	AK310456 TSC_hg19_v1_chr9_-_33395273	99502	-	AK294028 TSC_hg19_v1_chr9_-_33402480 AK297885	106711	-	BC062701 BC119672 BC119673 AB006190 NM_001170 TSC_hg19_v1_chr9_-_33402526	106748	-	AK225750|NFX1|4799|nuclear transcription factor, X-box binding 1##BC012151|NFX1|4799|nuclear transcription factor, X-box binding 1##DQ893676|NFX1|4799|nuclear transcription factor, X-box binding 1##DQ895843|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_002504|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_147133|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_147134|NFX1|4799|nuclear transcription factor, X-box binding 1##AF332009|NFX1|4799|nuclear transcription factor, X-box binding 1##AK291643|NFX1|4799|nuclear transcription factor, X-box binding 1##AL832342|NFX1|4799|nuclear transcription factor, X-box binding 1##BC006974|CHMP5|51510|charged multivesicular body protein 5##BC020796|CHMP5|51510|charged multivesicular body protein 5##AF132968|CHMP5|51510|charged multivesicular body protein 5##AF161525|CHMP5|51510|charged multivesicular body protein 5##DQ893179|CHMP5|51510|charged multivesicular body protein 5##DQ896479|CHMP5|51510|charged multivesicular body protein 5##DQ896480|CHMP5|51510|charged multivesicular body protein 5##AK310456|AQP7|364|aquaporin 7##AK294028|AQP7|364|aquaporin 7##AK297885|AQP7|364|aquaporin 7##BC062701|AQP7|364|aquaporin 7##BC119672|AQP7|364|aquaporin 7##BC119673|AQP7|364|aquaporin 7##AB006190|AQP7|364|aquaporin 7##NM_001170|AQP7|364|aquaporin 7	0.0	0.0	
chr11	1750490	1750667	reg1009186.p1	5.745	+	AB126075 NM_001012416 BC130399 BC133035	-32140	+	AB126074 AJ628247 NM_001001480	-99560	+	AB528165 AB126073 NM_001012709	-107233	-	TSC_hg19_v1_chr11_-_1769086 AK289574	18562	-	NM_001170820 TSC_hg19_v1_chr11_-_1771824	21246	-	TSC_hg19_v1_chr11_-_1785103 BT006910 BT020155 CR456947 CU677605 DQ893547 DQ893878 X05344 AB528530	34517	-	AB126075|KRTAP5-6|440023|keratin associated protein 5-6##NM_001012416|KRTAP5-6|440023|keratin associated protein 5-6##BC130399|KRTAP5-6|440023|keratin associated protein 5-6##BC133035|KRTAP5-6|440023|keratin associated protein 5-6##AB126074|KRTAP5-5|439915|keratin associated protein 5-5##AJ628247|KRTAP5-5|439915|keratin associated protein 5-5##NM_001001480|KRTAP5-5|439915|keratin associated protein 5-5##AB126073|KRTAP5-4|387267|keratin associated protein 5-4##NM_001012709|KRTAP5-4|387267|keratin associated protein 5-4##AK289574|IFITM10|402778|interferon induced transmembrane protein 10##NM_001170820|IFITM10|402778|interferon induced transmembrane protein 10##BT006910|CTSD|1509|cathepsin D##BT020155|CTSD|1509|cathepsin D##CR456947|CTSD|1509|cathepsin D##DQ893547|CTSD|1509|cathepsin D##DQ893878|CTSD|1509|cathepsin D##X05344|CTSD|1509|cathepsin D	0.993268	0.0	
chr19	19144773	19144933	reg1007033.p2	5.745	+	BC067125 TSC_hg19_v1_chr19_+_19144690	-193	+	TSC_hg19_v1_chr19_+_19144524 BC056161	-306	+	TSC_hg19_v1_chr19_+_19144418 NM_001199196 NM_033415 BC010051 AK303914 BX648486	-423	+	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	29956	+	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	104401	-	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	104422	-	BC067125|ARMC6|93436|armadillo repeat containing 6##BC056161|ARMC6|93436|armadillo repeat containing 6##NM_001199196|ARMC6|93436|armadillo repeat containing 6##NM_033415|ARMC6|93436|armadillo repeat containing 6##AK303914|ARMC6|93436|armadillo repeat containing 6##BX648486|ARMC6|93436|armadillo repeat containing 6##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A	0.65543	0.0	denovo_WM_7:-4:0.478
chr22	17739009	17739151	reg1005914.p2	5.745	+	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-38717	-	AF190746 NM_017424	-48302	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-58566	-	TSC_hg19_v1_chr22_-_17747522 AF277398	8491	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	304139	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	372365	-	AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.0	0.0	
chr4	26724877	26725030	reg1006076.p1	5.745	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-139273	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-232968	-	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-402271	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	137587	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3997046	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3997241	+	NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7	0.0	0.0	
chrX	48794420	48794592	reg1008627.p1	5.745	+	U77735 BC018111 AK312745 TSC_hg19_v1_chrX_-_48776302 AK290931 NM_006875	-18159	-	D84454 NM_001042498	-25272	-	CR450287 D88146 NM_005660 AK225508 AK290284 AK293415 AK293419 AK298484 AK299748 TSC_hg19_v1_chrX_-_48768926 BC035747 NM_001032289 AK292816	-25575	-	TSC_hg19_v1_chrX_-_48814831 BC028225	20299	-	TSC_hg19_v1_chrX_-_48814870 BC009917 NM_001136157 NM_001136158 NM_017602	20368	-	TSC_hg19_v1_chrX_-_48815168 BC098440	20625	-	U77735|PIM2|11040|pim-2 oncogene##BC018111|PIM2|11040|pim-2 oncogene##AK312745|PIM2|11040|pim-2 oncogene##AK290931|PIM2|11040|pim-2 oncogene##NM_006875|PIM2|11040|pim-2 oncogene##D84454|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001042498|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##CR450287|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D88146|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_005660|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK225508|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK290284|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293415|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293419|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK298484|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK299748|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC035747|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001032289|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK292816|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC028225|OTUD5|55593|OTU domain containing 5##BC009917|OTUD5|55593|OTU domain containing 5##NM_001136157|OTUD5|55593|OTU domain containing 5##NM_001136158|OTUD5|55593|OTU domain containing 5##NM_017602|OTUD5|55593|OTU domain containing 5##BC098440|OTUD5|55593|OTU domain containing 5	0.0	0.0	
chr1	195164639	195164772	reg1006641.p2	5.743	+	AF288390 BC022507 NM_003783	-2008973	-	TSC_hg19_v1_chr1_+_193091308 BC007325 AF312865 AK314772 AB590625 CU688012 EU831787 EU831865 BC011808	-2073349	+	TSC_hg19_v1_chr1_+_193091242 AK300929 BC065037	-2073466	+	EU251076 BC103947 BC103948 BC103949 BC103950 AY359444 NM_198503 BX647852 AK309729 TSC_hg19_v1_chr1_-_196577612	1412820	-	TSC_hg19_v1_chr1_-_196577676 AK131498	1412977	-	NM_000186 NM_001014975 TSC_hg19_v1_chr1_+_196621172 AK291395 AK225649 X07523 Y00716 BC037285 BC012610 BC110643 BC073982 BC142699 CU691466	1456422	+	AF288390|B3GALT2|8707|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2##BC022507|B3GALT2|8707|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2##NM_003783|B3GALT2|8707|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2##BC007325|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AF312865|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK314772|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##EU831787|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##EU831865|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK300929|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC065037|CDC73|79577|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##EU251076|KCNT2|343450|potassium channel, subfamily T, member 2##BC103947|KCNT2|343450|potassium channel, subfamily T, member 2##BC103948|KCNT2|343450|potassium channel, subfamily T, member 2##BC103949|KCNT2|343450|potassium channel, subfamily T, member 2##BC103950|KCNT2|343450|potassium channel, subfamily T, member 2##AY359444|KCNT2|343450|potassium channel, subfamily T, member 2##NM_198503|KCNT2|343450|potassium channel, subfamily T, member 2##BX647852|KCNT2|343450|potassium channel, subfamily T, member 2##AK309729|KCNT2|343450|potassium channel, subfamily T, member 2##AK131498|KCNT2|343450|potassium channel, subfamily T, member 2##NM_000186|CFH|3075|complement factor H##NM_001014975|CFH|3075|complement factor H##AK291395|CFH|3075|complement factor H##AK225649|CFH|3075|complement factor H##X07523|CFH|3075|complement factor H##Y00716|CFH|3075|complement factor H##BC037285|CFH|3075|complement factor H##BC012610|CFH|3075|complement factor H##BC110643|CFH|3075|complement factor H##BC073982|CFH|3075|complement factor H##BC142699|CFH|3075|complement factor H	0.0	0.0	
chr22	39147889	39148009	reg1007634.p1	5.743	+	TSC_hg19_v1_chr22_+_39101984 EU831484 EU831571 BC014075 AB385030 CR456501 CU013098 CU013386 U87964	-45922	+	NM_004286 TSC_hg19_v1_chr22_+_39101925	-46084	+	CR456923 CU677177 CU013023 CU013311 CR456473 AK291827 BC015026 D31884 TSC_hg19_v1_chr22_-_39096285 NM_014876	-51725	-	AK304188 TSC_hg19_v1_chr22_-_39150957 AK295787	3034	-	BX537962 NM_001199580 TSC_hg19_v1_chr22_-_39151472	3515	-	TSC_hg19_v1_chr22_-_39151986 BC094797	4043	-	EU831484|GTPBP1|9567|GTP binding protein 1##EU831571|GTPBP1|9567|GTP binding protein 1##BC014075|GTPBP1|9567|GTP binding protein 1##CR456501|GTPBP1|9567|GTP binding protein 1##CU013098|GTPBP1|9567|GTP binding protein 1##CU013386|GTPBP1|9567|GTP binding protein 1##U87964|GTPBP1|9567|GTP binding protein 1##NM_004286|GTPBP1|9567|GTP binding protein 1##CR456923|JOSD1|9929|Josephin domain containing 1##CU013023|JOSD1|9929|Josephin domain containing 1##CU013311|JOSD1|9929|Josephin domain containing 1##CR456473|JOSD1|9929|Josephin domain containing 1##AK291827|JOSD1|9929|Josephin domain containing 1##BC015026|JOSD1|9929|Josephin domain containing 1##D31884|JOSD1|9929|Josephin domain containing 1##NM_014876|JOSD1|9929|Josephin domain containing 1##AK304188|SUN2|25777|Sad1 and UNC84 domain containing 2##AK295787|SUN2|25777|Sad1 and UNC84 domain containing 2##BX537962|SUN2|25777|Sad1 and UNC84 domain containing 2##NM_001199580|SUN2|25777|Sad1 and UNC84 domain containing 2##BC094797|SUN2|25777|Sad1 and UNC84 domain containing 2	0.630487	0.0	denovo_WM_7:34:0.327
chr3	182765407	182765549	reg1008824.p2	5.743	+	AF456425 AF456426 TSC_hg19_v1_chr3_-_182698327 AF292100 AK314480 BC009478 AK056335 AK297328 NM_020640	-67149	-	TSC_hg19_v1_chr3_+_182511414 AB527450	-253999	+	TSC_hg19_v1_chr3_+_182511375 AF156548	-254089	+	AB587379 CU678606 TSC_hg19_v1_chr3_-_182817309 CR749608 AK316428 AB209737 AL442091 AK294882	51803	-	AK295293 TSC_hg19_v1_chr3_-_182817343 AK023051 AB029826 AF310339 BC004187 BC004214 AF310972 NM_020166	51872	-	BC036395 TSC_hg19_v1_chr3_-_182833987	68445	-	AF456425|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AF456426|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AF292100|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AK314480|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##BC009478|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AK056335|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AK297328|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##NM_020640|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AF156548|ATP11B|23200|ATPase, class VI, type 11B##CR749608|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK316428|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AB209737|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AL442091|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK294882|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK295293|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK023051|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AB029826|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AF310339|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC004187|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC004214|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AF310972|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##NM_020166|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC036395|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)	0.993313	0.0	denovo_WM_7:-18:0.787
chr7	75357111	75357283	reg1007167.p1	5.743	+	BC101598 BC143635 BC087844 BC022886 BC007683 BC014421 BC029646 TSC_hg19_v1_chr7_-_75157432 BC046153	-200012	-	NM_001099435	-232899	+	TSC_hg19_v1_chr7_-_75115568 BC082993 NM_001099415	-241628	-	AF365404 AB385224 TSC_hg19_v1_chr7_-_75368255 AK094866 AK304738 BC110545	11043	-	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	11113	-	NM_006072 AY358893	61941	-	BC101598|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC143635|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC087844|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC007683|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC014421|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC046153|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##NM_001099435|SPDYE5|442590|speedy homolog E5 (Xenopus laevis)##BC082993|POM121C|100101267|POM121 membrane glycoprotein C##NM_001099415|POM121C|100101267|POM121 membrane glycoprotein C##AF365404|HIP1|3092|huntingtin interacting protein 1##AK094866|HIP1|3092|huntingtin interacting protein 1##AK304738|HIP1|3092|huntingtin interacting protein 1##BC110545|HIP1|3092|huntingtin interacting protein 1##AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26	0.99693	0.0	
chr1	24047215	24047313	reg1001569.p1	5.742	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-28965	+	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	-28984	+	NM_002167 X69111	-160980	-	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	22640	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	22719	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	57505	-	BC018970|RPL11|6135|ribosomal protein L11##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AL049675|LOC100506963|100506963|uncharacterized LOC100506963	0.0	0.0	
chr15	78441097	78441250	reg1002694.p1	5.742	+	BT019962 CU690402 AB528675 AB012955 TSC_hg19_v1_chr15_-_78423867 AK293167 BC047381 BC057292 BC033108 NM_006383	-17411	-	NM_001101404	-56247	+	TSC_hg19_v1_chr15_-_78370032 AB028978 BC152465 NM_015079 NM_144572	-71220	-	TSC_hg19_v1_chr15_+_78441718 AK299970 AK096721 AK296002 BC036227 NM_005530 AK315963 CR749548 BC021967 AK316051	532	+	TSC_hg19_v1_chr15_+_78441734 AK222973	561	+	TSC_hg19_v1_chr15_+_78441739 U07681 AB529210 CU692430 DQ892774 DQ893529 DQ896022	581	+	BT019962|CIB2|10518|calcium and integrin binding family member 2##AB012955|CIB2|10518|calcium and integrin binding family member 2##AK293167|CIB2|10518|calcium and integrin binding family member 2##BC047381|CIB2|10518|calcium and integrin binding family member 2##BC057292|CIB2|10518|calcium and integrin binding family member 2##BC033108|CIB2|10518|calcium and integrin binding family member 2##NM_006383|CIB2|10518|calcium and integrin binding family member 2##NM_001101404|SH2D7|646892|SH2 domain containing 7##AB028978|TBC1D2B|23102|TBC1 domain family, member 2B##BC152465|TBC1D2B|23102|TBC1 domain family, member 2B##NM_015079|TBC1D2B|23102|TBC1 domain family, member 2B##NM_144572|TBC1D2B|23102|TBC1 domain family, member 2B##AK299970|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK296002|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##BC036227|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##NM_005530|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK315963|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##CR749548|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##BC021967|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK316051|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##AK222973|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##U07681|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##DQ892774|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##DQ893529|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha##DQ896022|IDH3A|3419|isocitrate dehydrogenase 3 (NAD+) alpha	1.934978	0.0	denovo_WM_7:-7:0.259	denovo_WM_7:7:0.669	denovo_WM_7:-8:0.259	denovo_WM_7:-9:0.260
chrX	56794880	56795001	reg1000066.p2	5.742	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-39249	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-204889	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-536030	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	227031	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	352988	-	BC071694 NM_019003	369117	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.11095	0.137902	
chr17	42219099	42219226	reg1005950.p1	5.741	+	TSC_hg19_v1_chr17_-_42201010 NM_001015053 NM_005474	-18146	-	TSC_hg19_v1_chr17_-_42201007 AK294760 AB011172	-18180	-	NM_138387 TSC_hg19_v1_chr17_+_42148102 BC021574 BC062596 AK091417 AX746969 BC002494	-70963	+	TSC_hg19_v1_chr17_+_42219297 NM_001171251 NM_024032 AK291924	104	+	TSC_hg19_v1_chr17_+_42219306 AL834295	172	+	TSC_hg19_v1_chr17_+_42219388 BC000121 AK021656	241	+	NM_001015053|HDAC5|10014|histone deacetylase 5##NM_005474|HDAC5|10014|histone deacetylase 5##AK294760|HDAC5|10014|histone deacetylase 5##AB011172|HDAC5|10014|histone deacetylase 5##NM_138387|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC021574|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC062596|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC002494|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##NM_001171251|C17orf53|78995|chromosome 17 open reading frame 53##NM_024032|C17orf53|78995|chromosome 17 open reading frame 53##AK291924|C17orf53|78995|chromosome 17 open reading frame 53##AL834295|C17orf53|78995|chromosome 17 open reading frame 53##BC000121|C17orf53|78995|chromosome 17 open reading frame 53##AK021656|C17orf53|78995|chromosome 17 open reading frame 53	0.989135	0.015986	denovo_WM_7:-100:0.651	denovo_WM_7:-102:0.208
chr11	87839274	87839391	reg1008870.p1	5.740	+	AK024853 TSC_hg19_v1_chr11_+_87032449	-806890	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-1090354	+	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	-1172944	-	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	69260	-	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	231535	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	231570	-	AK024853|TMEM135|65084|transmembrane protein 135##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C	0.644229	0.0	denovo_WM_7:29:0.253	denovo_WM_7:30:0.291
chr15	99600675	99600856	reg1008146.p1	5.739	+	AK058162 NM_001167902	-49742	-	BC104743 BC104744 BC105686 NM_001102612	-51928	-	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	-408009	+	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	44475	+	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	188941	-	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	190651	-	AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23	1.195547	0.0	denovo_WM_7:-5:0.691
chr21	37802688	37802865	reg1007377.p2	5.739	+	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	-45086	+	TSC_hg19_v1_chr21_+_37692548 BC058002 NM_015358 AK295133 BC007311 D50926 BC094779 BC132731 BC144116 AK292957 AB489143	-110257	+	AJ237839 NM_005128	-265938	+	BC012126 NM_012130 AY355349	35955	-	AF314090 AY355348 NM_001146079 NM_144492	49611	-	AJ566765 NM_001146078	112121	-	NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC058002|MORC3|23515|MORC family CW-type zinc finger 3##NM_015358|MORC3|23515|MORC family CW-type zinc finger 3##AK295133|MORC3|23515|MORC family CW-type zinc finger 3##BC007311|MORC3|23515|MORC family CW-type zinc finger 3##D50926|MORC3|23515|MORC family CW-type zinc finger 3##BC094779|MORC3|23515|MORC family CW-type zinc finger 3##BC132731|MORC3|23515|MORC family CW-type zinc finger 3##BC144116|MORC3|23515|MORC family CW-type zinc finger 3##AK292957|MORC3|23515|MORC family CW-type zinc finger 3##AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14##AF314090|CLDN14|23562|claudin 14##AY355348|CLDN14|23562|claudin 14##NM_001146079|CLDN14|23562|claudin 14##NM_144492|CLDN14|23562|claudin 14##AJ566765|CLDN14|23562|claudin 14##NM_001146078|CLDN14|23562|claudin 14	0.991649	0.0	denovo_WM_7:57:0.529	denovo_WM_7:58:0.205	denovo_WM_7:60:0.204
chr6	139499602	139499734	reg1005118.p2	5.739	+	BC070068 AB033492 NM_016217 TSC_hg19_v1_chr6_+_139456250	-43412	+	TSC_hg19_v1_chr6_+_139349935 AK309402 AF116682 BC014953	-149750	+	NM_021243 AF161398 TSC_hg19_v1_chr6_+_139349850	-149831	+	TSC_hg19_v1_chr6_-_139613136 BX647633 AL834248 AL831988 AK314725 BX647477 BC115383 BC115384 AB085905 NM_153235	113492	-	NM_001168389 NM_001168388	195755	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	196093	-	BC070068|HECA|51696|headcase homolog (Drosophila)##AB033492|HECA|51696|headcase homolog (Drosophila)##NM_016217|HECA|51696|headcase homolog (Drosophila)##AF116682|C6orf115|58527|chromosome 6 open reading frame 115##BC014953|C6orf115|58527|chromosome 6 open reading frame 115##NM_021243|C6orf115|58527|chromosome 6 open reading frame 115##AF161398|C6orf115|58527|chromosome 6 open reading frame 115##BX647633|TXLNB|167838|taxilin beta##AL834248|TXLNB|167838|taxilin beta##AL831988|TXLNB|167838|taxilin beta##AK314725|TXLNB|167838|taxilin beta##BX647477|TXLNB|167838|taxilin beta##BC115383|TXLNB|167838|taxilin beta##BC115384|TXLNB|167838|taxilin beta##AB085905|TXLNB|167838|taxilin beta##NM_153235|TXLNB|167838|taxilin beta##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	1.981232	0.0	denovo_WM_7:-21:0.230	denovo_WM_7:-22:0.230	denovo_WM_7:-23:0.230	denovo_WM_7:-24:0.230	denovo_WM_7:52:0.697	denovo_WM_7:53:0.240
chr11	102173865	102173955	reg1007279.p2	5.738	+	NM_001195045 AK316116	-190703	+	TSC_hg19_v1_chr11_+_101981177 AK300414 NM_001130145 NM_001195044 NM_006106 BC038235 AB528588 AB567720 AB567721 AY316529	-192708	+	NM_001195005 NM_032930 AK094851 BC054869 TSC_hg19_v1_chr11_+_101918188 BC006128	-255727	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	14292	+	TSC_hg19_v1_chr11_+_102217944 AK303197	44019	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	44118	+	NM_001195045|YAP1|10413|Yes-associated protein 1##AK316116|YAP1|10413|Yes-associated protein 1##AK300414|YAP1|10413|Yes-associated protein 1##NM_001130145|YAP1|10413|Yes-associated protein 1##NM_001195044|YAP1|10413|Yes-associated protein 1##NM_006106|YAP1|10413|Yes-associated protein 1##BC038235|YAP1|10413|Yes-associated protein 1##AB567720|YAP1|10413|Yes-associated protein 1##AB567721|YAP1|10413|Yes-associated protein 1##AY316529|YAP1|10413|Yes-associated protein 1##NM_001195005|C11orf70|85016|chromosome 11 open reading frame 70##NM_032930|C11orf70|85016|chromosome 11 open reading frame 70##AK094851|C11orf70|85016|chromosome 11 open reading frame 70##BC054869|C11orf70|85016|chromosome 11 open reading frame 70##BC006128|C11orf70|85016|chromosome 11 open reading frame 70##NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2	0.99437	0.0	
chr1	12261489	12261669	reg1006221.p2	5.738	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	-34468	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	-34518	+	D86042 BC063482 NM_152942 BC073839 BC141804	-75563	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	28528	+	TSC_hg19_v1_chr1_+_12403045 AK057675	141491	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	416004	-	AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3	0.99493	0.0	denovo_WM_7:-42:0.736
chr16	33398626	33398789	reg1008064.p1	5.738	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-136574	+	AL133588 NM_016212	-137193	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-193109	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	13256565	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	13256599	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	13324355	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	0.997245	0.0	
chr3	124338744	124338901	reg1006563.p1	5.738	+	NM_007064 TSC_hg19_v1_chr3_+_124303522 BC058015 AB011422	-35294	+	TSC_hg19_v1_chr3_+_124103674 AK131379	-235199	+	AK314126 AK311154 NM_001024660 NM_003947 AK311581 U94190 BC037924 AB384665	-525217	+	J03626 NM_000373 TSC_hg19_v1_chr3_+_124449256	110417	+	TSC_hg19_v1_chr3_+_124449303 AL080099 AB062285 BC000364 BC007511 EU832341 EU832426 EU921886 EU921887 EU921888 EU921889 EU921890 EU921891 EU921892 EU921893 EU921894 EU921895 AK291306 D86227 D86228 D86230 CR456787 M36661	110494	+	TSC_hg19_v1_chr3_-_124605863 AB587397 DQ892778 DQ896025 M35011 AK315429 J05633	267044	-	NM_007064|KALRN|8997|kalirin, RhoGEF kinase##BC058015|KALRN|8997|kalirin, RhoGEF kinase##AB011422|KALRN|8997|kalirin, RhoGEF kinase##AK131379|KALRN|8997|kalirin, RhoGEF kinase##AK314126|KALRN|8997|kalirin, RhoGEF kinase##AK311154|KALRN|8997|kalirin, RhoGEF kinase##NM_001024660|KALRN|8997|kalirin, RhoGEF kinase##NM_003947|KALRN|8997|kalirin, RhoGEF kinase##AK311581|KALRN|8997|kalirin, RhoGEF kinase##U94190|KALRN|8997|kalirin, RhoGEF kinase##BC037924|KALRN|8997|kalirin, RhoGEF kinase##J03626|UMPS|7372|uridine monophosphate synthetase##NM_000373|UMPS|7372|uridine monophosphate synthetase##AL080099|UMPS|7372|uridine monophosphate synthetase##AB062285|UMPS|7372|uridine monophosphate synthetase##BC000364|UMPS|7372|uridine monophosphate synthetase##BC007511|UMPS|7372|uridine monophosphate synthetase##EU832341|UMPS|7372|uridine monophosphate synthetase##EU832426|UMPS|7372|uridine monophosphate synthetase##EU921886|UMPS|7372|uridine monophosphate synthetase##EU921887|UMPS|7372|uridine monophosphate synthetase##EU921888|UMPS|7372|uridine monophosphate synthetase##EU921889|UMPS|7372|uridine monophosphate synthetase##EU921890|UMPS|7372|uridine monophosphate synthetase##EU921891|UMPS|7372|uridine monophosphate synthetase##EU921892|UMPS|7372|uridine monophosphate synthetase##EU921893|UMPS|7372|uridine monophosphate synthetase##EU921894|UMPS|7372|uridine monophosphate synthetase##EU921895|UMPS|7372|uridine monophosphate synthetase##AK291306|UMPS|7372|uridine monophosphate synthetase##D86227|UMPS|7372|uridine monophosphate synthetase##D86228|UMPS|7372|uridine monophosphate synthetase##D86230|UMPS|7372|uridine monophosphate synthetase##CR456787|UMPS|7372|uridine monophosphate synthetase##M36661|UMPS|7372|uridine monophosphate synthetase##DQ892778|ITGB5|3693|integrin, beta 5##DQ896025|ITGB5|3693|integrin, beta 5##M35011|ITGB5|3693|integrin, beta 5##AK315429|ITGB5|3693|integrin, beta 5##J05633|ITGB5|3693|integrin, beta 5	0.97107	0.0	denovo_WM_7:7:0.491	denovo_WM_7:10:0.323
chr8	23498915	23499047	reg1008429.p2	5.738	+	BC033834 BC069168 TSC_hg19_v1_chr8_+_23427607 AF116640	-71430	+	AK074708 AK223194 AF223466 AY032628 BC015013 TSC_hg19_v1_chr8_+_23386513 HQ258387 AK075313 AL833186	-112458	+	TSC_hg19_v1_chr8_+_23386395 BC132799 BC132801	-112567	+	AB464643 AF249669 AF249670 AF249671 AF249672 EU446642 U91540 U80669 BC074863 BC074864 BC111569 BC111574 AF247704 NM_006167 TSC_hg19_v1_chr8_-_23540449	41450	-	AB464642 NM_001136271	65129	-	BC029044 AK297734 AK312589 NM_003155 U25997 TSC_hg19_v1_chr8_-_23712320	213330	-	BC033834|SLC25A37|51312|solute carrier family 25, member 37##AF116640|SLC25A37|51312|solute carrier family 25, member 37##AK074708|SLC25A37|51312|solute carrier family 25, member 37##AK223194|SLC25A37|51312|solute carrier family 25, member 37##AF223466|SLC25A37|51312|solute carrier family 25, member 37##AY032628|SLC25A37|51312|solute carrier family 25, member 37##BC015013|SLC25A37|51312|solute carrier family 25, member 37##HQ258387|SLC25A37|51312|solute carrier family 25, member 37##AK075313|SLC25A37|51312|solute carrier family 25, member 37##AL833186|SLC25A37|51312|solute carrier family 25, member 37##BC132799|SLC25A37|51312|solute carrier family 25, member 37##BC132801|SLC25A37|51312|solute carrier family 25, member 37##AF249669|NKX3-1|4824|NK3 homeobox 1##AF249670|NKX3-1|4824|NK3 homeobox 1##AF249671|NKX3-1|4824|NK3 homeobox 1##AF249672|NKX3-1|4824|NK3 homeobox 1##EU446642|NKX3-1|4824|NK3 homeobox 1##U91540|NKX3-1|4824|NK3 homeobox 1##U80669|NKX3-1|4824|NK3 homeobox 1##BC074863|NKX3-1|4824|NK3 homeobox 1##BC074864|NKX3-1|4824|NK3 homeobox 1##AF247704|NKX3-1|4824|NK3 homeobox 1##NM_006167|NKX3-1|4824|NK3 homeobox 1##AB464642|NKX2-6|137814|NK2 homeobox 6##NM_001136271|NKX2-6|137814|NK2 homeobox 6##BC029044|STC1|6781|stanniocalcin 1##AK297734|STC1|6781|stanniocalcin 1##AK312589|STC1|6781|stanniocalcin 1##NM_003155|STC1|6781|stanniocalcin 1##U25997|STC1|6781|stanniocalcin 1	0.99467	0.0	denovo_WM_7:13:0.239	denovo_WM_7:14:0.239	denovo_WM_7:15:0.239	denovo_WM_7:16:0.239
chrX	12910176	12910313	reg1006897.p1	5.738	+	AK313858 BC033651 NM_016562 AF240467 AF245702	-25046	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	-100676	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	-100747	+	AK314240 NM_138636 AF246971 AY358296 BC101074 BC101075 BC101076 BC101077 AF245703	14513	+	BC107789 NM_021109 M17733 AK055976 AK057827 AK311747 BC016732 BC022857 BC062436 BC070248 BC070249 BC083509 BC092437 BC104666 BC061586 BC151215 BC139925 BC101790 BC101792 BC001631 BC064954 BC128103 BC141975 BC141976 BC128102	82996	+	TSC_hg19_v1_chrX_+_12994293 BC104464 BC104465 BT007090 X02493	84099	+	AK313858|TLR7|51284|toll-like receptor 7##BC033651|TLR7|51284|toll-like receptor 7##NM_016562|TLR7|51284|toll-like receptor 7##AF240467|TLR7|51284|toll-like receptor 7##AF245702|TLR7|51284|toll-like receptor 7##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK314240|TLR8|51311|toll-like receptor 8##NM_138636|TLR8|51311|toll-like receptor 8##AF246971|TLR8|51311|toll-like receptor 8##AY358296|TLR8|51311|toll-like receptor 8##BC101074|TLR8|51311|toll-like receptor 8##BC101075|TLR8|51311|toll-like receptor 8##BC101076|TLR8|51311|toll-like receptor 8##BC101077|TLR8|51311|toll-like receptor 8##AF245703|TLR8|51311|toll-like receptor 8##BC107789|TMSB4X|7114|thymosin beta 4, X-linked##NM_021109|TMSB4X|7114|thymosin beta 4, X-linked##M17733|TMSB4X|7114|thymosin beta 4, X-linked##AK055976|TMSB4X|7114|thymosin beta 4, X-linked##AK057827|TMSB4X|7114|thymosin beta 4, X-linked##AK311747|TMSB4X|7114|thymosin beta 4, X-linked##BC016732|TMSB4X|7114|thymosin beta 4, X-linked##BC022857|TMSB4X|7114|thymosin beta 4, X-linked##BC062436|TMSB4X|7114|thymosin beta 4, X-linked##BC070248|TMSB4X|7114|thymosin beta 4, X-linked##BC070249|TMSB4X|7114|thymosin beta 4, X-linked##BC083509|TMSB4X|7114|thymosin beta 4, X-linked##BC092437|TMSB4X|7114|thymosin beta 4, X-linked##BC104666|TMSB4X|7114|thymosin beta 4, X-linked##BC061586|TMSB4X|7114|thymosin beta 4, X-linked##BC151215|TMSB4X|7114|thymosin beta 4, X-linked##BC139925|TMSB4X|7114|thymosin beta 4, X-linked##BC101790|TMSB4X|7114|thymosin beta 4, X-linked##BC101792|TMSB4X|7114|thymosin beta 4, X-linked##BC001631|TMSB4X|7114|thymosin beta 4, X-linked##BC064954|TMSB4X|7114|thymosin beta 4, X-linked##BC128103|TMSB4X|7114|thymosin beta 4, X-linked##BC141975|TMSB4X|7114|thymosin beta 4, X-linked##BC141976|TMSB4X|7114|thymosin beta 4, X-linked##BC128102|TMSB4X|7114|thymosin beta 4, X-linked##BC104464|TMSB4X|7114|thymosin beta 4, X-linked##BC104465|TMSB4X|7114|thymosin beta 4, X-linked##BT007090|TMSB4X|7114|thymosin beta 4, X-linked##X02493|TMSB4X|7114|thymosin beta 4, X-linked	0.908291	0.0	denovo_WM_7:26:0.853
chr11	13180594	13180718	reg1008160.p1	5.737	+	TSC_hg19_v1_chr11_+_13030883 NM_001080521	-149732	+	TSC_hg19_v1_chr11_+_12960793 AK075236	-219845	+	TSC_hg19_v1_chr11_+_12695982 NM_021961	-484693	+	TSC_hg19_v1_chr11_+_13299288 NM_001030272 NM_001030273 NM_001178	118636	+	TSC_hg19_v1_chr11_+_13299331 AK315174	118676	+	BC041129 TSC_hg19_v1_chr11_+_13299351 AK291510	118702	+	NM_001080521|RASSF10|644943|Ras association (RalGDS/AF-6) domain family (N-terminal) member 10##AK075236|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)##NM_021961|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)##NM_001030272|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_001030273|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_001178|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AK315174|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##BC041129|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AK291510|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like	2.140293	0.0	denovo_WM_7:-10:0.232	denovo_WM_7:-15:0.474	denovo_WM_7:-45:0.209
chr1	28053063	28053218	reg1007741.p2	5.737	+	TSC_hg19_v1_chr1_+_28052467 BC025768 NM_001143912 NM_001143913 NM_001143914 NM_001143915 NM_152660 AK290120 AK301672 AK098318 AK310165 AL035307 AL035309 CU693060	-612	+	TSC_hg19_v1_chr1_-_27998734 NM_002038 NM_022872 NM_022873	-54401	-	TSC_hg19_v1_chr1_-_27998704 AK024814 AK314488	-54431	-	TSC_hg19_v1_chr1_+_28099762 NM_177424 AF123769 AL035306 AK297585 BC046999 AB464269 CU692348 CR407620 AK299982	46631	+	NM_014110 TSC_hg19_v1_chr1_+_28157314	104146	+	TSC_hg19_v1_chr1_+_28157334 AF061958 AK292077 AK297771 AK304619 NM_002713 NM_138558 AK307570 BC093017	104188	+	BC025768|FAM76A|199870|family with sequence similarity 76, member A##NM_001143912|FAM76A|199870|family with sequence similarity 76, member A##NM_001143913|FAM76A|199870|family with sequence similarity 76, member A##NM_001143914|FAM76A|199870|family with sequence similarity 76, member A##NM_001143915|FAM76A|199870|family with sequence similarity 76, member A##NM_152660|FAM76A|199870|family with sequence similarity 76, member A##AK290120|FAM76A|199870|family with sequence similarity 76, member A##AK301672|FAM76A|199870|family with sequence similarity 76, member A##AK098318|FAM76A|199870|family with sequence similarity 76, member A##AK310165|FAM76A|199870|family with sequence similarity 76, member A##AL035307|FAM76A|199870|family with sequence similarity 76, member A##AL035309|FAM76A|199870|family with sequence similarity 76, member A##NM_002038|IFI6|2537|interferon, alpha-inducible protein 6##NM_022872|IFI6|2537|interferon, alpha-inducible protein 6##NM_022873|IFI6|2537|interferon, alpha-inducible protein 6##AK024814|IFI6|2537|interferon, alpha-inducible protein 6##AK314488|IFI6|2537|interferon, alpha-inducible protein 6##NM_177424|STX12|23673|syntaxin 12##AF123769|STX12|23673|syntaxin 12##AL035306|STX12|23673|syntaxin 12##AK297585|STX12|23673|syntaxin 12##BC046999|STX12|23673|syntaxin 12##CR407620|STX12|23673|syntaxin 12##AK299982|STX12|23673|syntaxin 12##NM_014110|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AF061958|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK292077|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK297771|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK304619|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##NM_002713|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##NM_138558|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##AK307570|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8##BC093017|PPP1R8|5511|protein phosphatase 1, regulatory subunit 8	0.999702	0.0	denovo_WM_7:6:0.457	denovo_WM_7:7:0.457
chr16	85969858	85970038	reg1004061.p1	5.737	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-37162	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-136613	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-136643	+	TSC_hg19_v1_chr16_-_86542463 AK091834	572516	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	574208	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	574292	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.0	0.0	
chr3	150104956	150105092	reg1002537.p6	5.737	+	BC012363 TSC_hg19_v1_chr3_+_149689094	-415944	+	TSC_hg19_v1_chr3_-_149688960 BC043646	-416095	-	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	-416328	-	TSC_hg19_v1_chr3_+_150126084 AK297383 AB014569	21048	+	TSC_hg19_v1_chr3_+_150126774 BC044643 NM_014779	21739	+	X75694 CR533472 TSC_hg19_v1_chr3_-_150264030	158946	-	BC012363|LOC646903|646903|uncharacterized LOC646903##BC043646|PFN2|5217|profilin 2##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##AK297383|TSC22D2|9819|TSC22 domain family, member 2##AB014569|TSC22D2|9819|TSC22 domain family, member 2##BC044643|TSC22D2|9819|TSC22 domain family, member 2##NM_014779|TSC22D2|9819|TSC22 domain family, member 2##X75694|SERP1|27230|stress-associated endoplasmic reticulum protein 1##CR533472|SERP1|27230|stress-associated endoplasmic reticulum protein 1	0.996444	0.0	
chr1	120801427	120801607	reg1006368.p2	5.736	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-189202	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-189251	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-189311	-	NM_001100910	37487	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	134392	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	134435	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.996642	0.0	
chr2	231505228	231505361	reg1008711.p1	5.736	+	AK091898 NM_001206704	-223824	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-224338	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-224375	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	72252	+	TSC_hg19_v1_chr2_+_231577633 BC020570	72350	+	AK292382 NM_001130849 NM_001130850 AK315692	72984	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.960526	0.198584	denovo_WM_7:-38:0.569
chr5	142784224	142784329	reg1008353.p1	5.736	+	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-110	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-244	-	TSC_hg19_v1_chr5_-_142783310 AJ888004	-909	-	NM_001018074 NM_001018075 NM_001018077	30800	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	407482	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	765859	-	BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ888004|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5	0.296764	0.029258	denovo_WM_7:-27:0.212
chr5	158832819	158832972	reg1009440.p1	5.736	+	BC074723 M65272 NM_002187	-75421	-	TSC_hg19_v1_chr5_+_158690297 AY444562 AK057996 BC013425	-142609	+	NM_145049	-142807	+	NM_000679 U03865 BC136568 BC136569 AK309989 L31773	510930	+	TSC_hg19_v1_chr5_+_159436145 AK315262	603252	+	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	603272	+	BC074723|IL12B|3593|interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)##M65272|IL12B|3593|interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)##NM_002187|IL12B|3593|interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40)##AY444562|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##AK057996|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##BC013425|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##NM_145049|UBLCP1|134510|ubiquitin-like domain containing CTD phosphatase 1##NM_000679|ADRA1B|147|adrenergic, alpha-1B-, receptor##U03865|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136568|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136569|ADRA1B|147|adrenergic, alpha-1B-, receptor##L31773|ADRA1B|147|adrenergic, alpha-1B-, receptor##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1	0.035017	0.0	
chrX	130128745	130128884	reg1009798.p1	5.736	+	TSC_hg19_v1_chrX_-_130037207 AK000353 NM_006375 NM_182314	-91608	-	TSC_hg19_v1_chrX_-_130037184 BC108713 AL133207 AK289812 AK289837	-91637	-	TSC_hg19_v1_chrX_+_129535955 BC003676 NM_016024 AK292855 BC105582 BC012345 AL050405 BC033750 BC063517 BC010036 BC040433 BC050707	-592861	+	AK128203 NM_144967 AK296748 AX721074	63458	+	BC028312 NM_001170963	294220	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	294448	-	AK000353|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_006375|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_182314|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##BC108713|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AL133207|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289812|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289837|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##BC003676|RBMX2|51634|RNA binding motif protein, X-linked 2##NM_016024|RBMX2|51634|RNA binding motif protein, X-linked 2##AK292855|RBMX2|51634|RNA binding motif protein, X-linked 2##BC105582|RBMX2|51634|RNA binding motif protein, X-linked 2##BC012345|RBMX2|51634|RNA binding motif protein, X-linked 2##AL050405|RBMX2|51634|RNA binding motif protein, X-linked 2##BC033750|RBMX2|51634|RNA binding motif protein, X-linked 2##BC063517|RBMX2|51634|RNA binding motif protein, X-linked 2##BC010036|RBMX2|51634|RNA binding motif protein, X-linked 2##BC040433|RBMX2|51634|RNA binding motif protein, X-linked 2##BC050707|RBMX2|51634|RNA binding motif protein, X-linked 2##AK128203|ARHGAP36|158763|Rho GTPase activating protein 36##NM_144967|ARHGAP36|158763|Rho GTPase activating protein 36##AK296748|ARHGAP36|158763|Rho GTPase activating protein 36##BC028312|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170963|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1	0.999535	0.981876	CTCF.p2:11:0.982	denovo_WM_7:-41:0.732
chr10	73381718	73381874	reg1007817.p2	5.735	+	TSC_hg19_v1_chr10_+_73156683 BC011570 NM_001171930 NM_001171931 NM_001171932 NM_022124 NM_052836 BC032581 BC139903 BC108254 BC065284 BC136976 BC136977	-225058	+	BC063019 TSC_hg19_v1_chr10_+_73079044 AY288928	-302750	+	AX775915 AX775917 AX775919 AX775921 NM_001174098 NM_018344 TSC_hg19_v1_chr10_+_73079015 AK316152 AY358686 BC120996 BC120997 AK304503 BC050589 AK314497	-302771	+	AK123442 BC071608 NM_001164375 TSC_hg19_v1_chr10_-_73479685	97796	-	AK074172 NM_001168390	115784	-	CU676566 BC020568 AY265805 TSC_hg19_v1_chr10_-_73533278 EF506490 AK024449 BC111048 AY358379 NM_022153	151510	-	BC011570|CDH23|64072|cadherin-related 23##NM_001171930|CDH23|64072|cadherin-related 23##NM_001171931|CDH23|64072|cadherin-related 23##NM_001171932|CDH23|64072|cadherin-related 23##NM_022124|CDH23|64072|cadherin-related 23##NM_052836|CDH23|64072|cadherin-related 23##BC032581|CDH23|64072|cadherin-related 23##BC139903|CDH23|64072|cadherin-related 23##BC108254|CDH23|64072|cadherin-related 23##BC065284|CDH23|64072|cadherin-related 23##BC136976|CDH23|64072|cadherin-related 23##BC136977|CDH23|64072|cadherin-related 23##BC063019|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY288928|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775915|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775917|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775919|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775921|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_001174098|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_018344|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK316152|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY358686|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120996|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120997|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK304503|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC050589|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK314497|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK123442|C10orf105|414152|chromosome 10 open reading frame 105##BC071608|C10orf105|414152|chromosome 10 open reading frame 105##NM_001164375|C10orf105|414152|chromosome 10 open reading frame 105##AK074172|C10orf105|414152|chromosome 10 open reading frame 105##NM_001168390|C10orf105|414152|chromosome 10 open reading frame 105##BC020568|C10orf54|64115|chromosome 10 open reading frame 54##AY265805|C10orf54|64115|chromosome 10 open reading frame 54##EF506490|C10orf54|64115|chromosome 10 open reading frame 54##AK024449|C10orf54|64115|chromosome 10 open reading frame 54##BC111048|C10orf54|64115|chromosome 10 open reading frame 54##AY358379|C10orf54|64115|chromosome 10 open reading frame 54##NM_022153|C10orf54|64115|chromosome 10 open reading frame 54	0.382656	0.018339	
chr15	83501460	83501609	reg1008072.p1	5.735	+	TSC_hg19_v1_chr15_+_83478391 AK126887 AB075851	-23163	+	NM_001080435	-23562	+	BC130569 BC144175 BC144181 NM_001007122 AK122875 AL833295	-26722	-	AF081530 TSC_hg19_v1_chr15_-_83621443 AK292772 BC012109 NM_004839 NM_199330	119888	-	TSC_hg19_v1_chr15_-_83654854 AK097109	153325	-	NM_031452 TSC_hg19_v1_chr15_+_83654965 BC112329 AK027095 BC003627 BC027181	153444	+	AK126887|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AB075851|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##NM_001080435|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##BC130569|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144175|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144181|FSD2|123722|fibronectin type III and SPRY domain containing 2##NM_001007122|FSD2|123722|fibronectin type III and SPRY domain containing 2##AK122875|FSD2|123722|fibronectin type III and SPRY domain containing 2##AL833295|FSD2|123722|fibronectin type III and SPRY domain containing 2##AF081530|HOMER2|9455|homer homolog 2 (Drosophila)##AK292772|HOMER2|9455|homer homolog 2 (Drosophila)##BC012109|HOMER2|9455|homer homolog 2 (Drosophila)##NM_004839|HOMER2|9455|homer homolog 2 (Drosophila)##NM_199330|HOMER2|9455|homer homolog 2 (Drosophila)##AK097109|LOC100131860|100131860|uncharacterized LOC100131860##NM_031452|FAM103A1|83640|family with sequence similarity 103, member A1##BC112329|FAM103A1|83640|family with sequence similarity 103, member A1##AK027095|FAM103A1|83640|family with sequence similarity 103, member A1##BC003627|FAM103A1|83640|family with sequence similarity 103, member A1##BC027181|FAM103A1|83640|family with sequence similarity 103, member A1	0.0	0.0	
chr6	97731426	97731599	reg1000140.p2	5.735	+	AK128060 NM_198468 BC142948 TSC_hg19_v1_chr6_-_97731095 CR749822	-422	-	NM_052904 AK055292 BC071627 TSC_hg19_v1_chr6_+_97372638 AK295479 AF351610 AK297240	-358889	+	TSC_hg19_v1_chr6_-_97345768 NM_014165	-385748	-	AK095588 NM_005604 TSC_hg19_v1_chr6_+_99282579	1551068	+	Z11933 TSC_hg19_v1_chr6_+_99282600 BC051699 AB385538	1551160	+	TSC_hg19_v1_chr6_-_99395800 BC091484 BC032641	1664277	-	AK128060|MMS22L|253714|MMS22-like, DNA repair protein##NM_198468|MMS22L|253714|MMS22-like, DNA repair protein##BC142948|MMS22L|253714|MMS22-like, DNA repair protein##CR749822|MMS22L|253714|MMS22-like, DNA repair protein##NM_052904|KLHL32|114792|kelch-like 32 (Drosophila)##AK055292|KLHL32|114792|kelch-like 32 (Drosophila)##BC071627|KLHL32|114792|kelch-like 32 (Drosophila)##AK295479|KLHL32|114792|kelch-like 32 (Drosophila)##AF351610|KLHL32|114792|kelch-like 32 (Drosophila)##AK297240|KLHL32|114792|kelch-like 32 (Drosophila)##NM_014165|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AK095588|POU3F2|5454|POU class 3 homeobox 2##NM_005604|POU3F2|5454|POU class 3 homeobox 2##Z11933|POU3F2|5454|POU class 3 homeobox 2##BC051699|POU3F2|5454|POU class 3 homeobox 2##BC091484|FBXL4|26235|F-box and leucine-rich repeat protein 4##BC032641|FBXL4|26235|F-box and leucine-rich repeat protein 4	0.0	0.0	
chr7	97252770	97252950	reg1007821.p2	5.735	+	TSC_hg19_v1_chr7_+_96747012 BC022858 AF201933 BC020621	-505830	+	BC028409 NM_020186	-506956	+	BC006226 TSC_hg19_v1_chr7_-_96654144 AK023493 NM_005221 AK297614	-598666	-	NM_003182 NM_013996 NM_013997 NM_013998 U37529 AK222957 BC018047 X54469	108492	+	AK302242 AK000379 NM_001178077 NM_133436	248590	-	BC008723 TSC_hg19_v1_chr7_-_97501721 BC014621	248844	-	BC022858|ACN9|57001|ACN9 homolog (S. cerevisiae)##AF201933|ACN9|57001|ACN9 homolog (S. cerevisiae)##BC020621|ACN9|57001|ACN9 homolog (S. cerevisiae)##BC028409|ACN9|57001|ACN9 homolog (S. cerevisiae)##NM_020186|ACN9|57001|ACN9 homolog (S. cerevisiae)##BC006226|DLX5|1749|distal-less homeobox 5##AK023493|DLX5|1749|distal-less homeobox 5##NM_005221|DLX5|1749|distal-less homeobox 5##AK297614|DLX5|1749|distal-less homeobox 5##NM_003182|TAC1|6863|tachykinin, precursor 1##NM_013996|TAC1|6863|tachykinin, precursor 1##NM_013997|TAC1|6863|tachykinin, precursor 1##NM_013998|TAC1|6863|tachykinin, precursor 1##U37529|TAC1|6863|tachykinin, precursor 1##AK222957|TAC1|6863|tachykinin, precursor 1##BC018047|TAC1|6863|tachykinin, precursor 1##X54469|TAC1|6863|tachykinin, precursor 1##AK302242|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##AK000379|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_001178077|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##NM_133436|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##BC008723|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)##BC014621|ASNS|440|asparagine synthetase (glutamine-hydrolyzing)	0.40824	0.0	denovo_WM_7:-30:0.408
chr8	28943339	28943519	reg1001827.p2	5.735	+	TSC_hg19_v1_chr8_+_28748135 AY522342 DQ269478 BC069242 NM_024567	-195302	+	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	-195512	+	NM_001145159 NM_018250	-195732	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	177185	-	AL137704 NM_057158	262892	-	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	264641	-	AY522342|HMBOX1|79618|homeobox containing 1##DQ269478|HMBOX1|79618|homeobox containing 1##BC069242|HMBOX1|79618|homeobox containing 1##NM_024567|HMBOX1|79618|homeobox containing 1##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4	0.992206	0.0	
chrX	109266448	109266582	reg1005436.p1	5.735	+	TSC_hg19_v1_chrX_+_109246360 BC085605	-20160	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	-20175	+	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	-20645	+	CU687440 TSC_hg19_v1_chrX_-_109561311 AK314596 BC060813	294790	-	TSC_hg19_v1_chrX_-_109561314 BX648797 NM_001025580 NM_015365	294831	-	TSC_hg19_v1_chrX_-_109561428 AJ007014	294931	-	BC085605|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##AK314596|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BC060813|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BX648797|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_001025580|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_015365|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##AJ007014|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	0.9488	0.0	denovo_WM_7:45:0.492
chrX	130913469	130913562	reg1000046.p2	5.735	+	BC137050 AB529233 NM_001004486	-235517	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-490103	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-490253	-	TSC_hg19_v1_chrX_-_130964633 AK097911	51136	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	243806	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	244125	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.0	0.0	
chr20	47835602	47835765	reg1006748.p2	5.734	+	AF061938 AF061939 AF061940 AF061941 AY546099 NM_001037328 NM_004602 NM_017452 NM_017453 NM_017454 TSC_hg19_v1_chr20_-_47804905	-30770	-	TSC_hg19_v1_chr20_-_47804876 AK292859 BC001893 BC010169 AY529074 AK291487 BC007532 AK057739 AK025519 BC095397 AL136601	-30897	-	TSC_hg19_v1_chr20_+_47662875 AF053640	-172795	+	NM_017895 BC126287 BC130275 BC144125 BC104480 HQ258508 AY044431 AL832131 EU718675 TSC_hg19_v1_chr20_+_47835952 AK300135	209	+	TSC_hg19_v1_chr20_+_47835954 AK022979	275	+	TSC_hg19_v1_chr20_+_47835964 BC009304 BC011927 BC016060 HQ258546	291	+	AF061938|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061939|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061940|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061941|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY546099|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_001037328|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_004602|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017452|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017453|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017454|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK292859|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC001893|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC010169|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY529074|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK291487|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC007532|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK057739|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK025519|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC095397|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AL136601|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_017895|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC126287|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC130275|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC144125|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC104480|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258508|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AY044431|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AL832131|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##EU718675|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK300135|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK022979|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC009304|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC011927|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC016060|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258546|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	0.038251	0.0	denovo_WM_7:-107:0.588
chrX	80457399	80457524	reg1007578.p2	5.734	+	AK094058 AX748432 NM_030763	-21	-	NM_003022 AK024892 AK309350 BC103762 TSC_hg19_v1_chrX_+_80457495	-58	+	BC111490 AY497046 AY497048 AY497049 AY497050 AY497051 AY497052 AY497053 AY497054 AY497055 NM_153252	-392254	-	TSC_hg19_v1_chrX_+_80457572 AK309351	115	+	TSC_hg19_v1_chrX_+_80457600 BC016709 AL136718 AK129610 AF042081 AK310011 AB590910 CR533478	187	+	AK314967 NM_000307 TSC_hg19_v1_chrX_+_82763302 X82324 AB464667	2305838	+	AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_003022|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK024892|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309350|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC103762|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC111490|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497046|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497048|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497049|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497050|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497051|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497052|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497053|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497054|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497055|BRWD3|254065|bromodomain and WD repeat domain containing 3##NM_153252|BRWD3|254065|bromodomain and WD repeat domain containing 3##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC016709|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AL136718|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK129610|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AF042081|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK310011|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##CR533478|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK314967|POU3F4|5456|POU class 3 homeobox 4##NM_000307|POU3F4|5456|POU class 3 homeobox 4##X82324|POU3F4|5456|POU class 3 homeobox 4	0.077973	0.0	
chr12	24331033	24331213	reg1005532.p1	5.733	+	BC014929 TSC_hg19_v1_chr12_-_24103967 AK303970	-227162	-	TSC_hg19_v1_chr12_-_24103855 AK299607 AK096569	-227269	-	AK074317 TSC_hg19_v1_chr12_-_24102605 BC065532 AB081589 NM_006940	-228521	-	TSC_hg19_v1_chr12_-_24715349 AB081588 NM_152989 BC060773	384242	-	BC104436 BC104437 TSC_hg19_v1_chr12_-_24737100 AK057456	405970	-	TSC_hg19_v1_chr12_-_25055230 CR749308 BC033864 NM_001178094	724151	-	BC014929|SOX5|6660|SRY (sex determining region Y)-box 5##AK303970|SOX5|6660|SRY (sex determining region Y)-box 5##AK299607|SOX5|6660|SRY (sex determining region Y)-box 5##AK096569|SOX5|6660|SRY (sex determining region Y)-box 5##AK074317|SOX5|6660|SRY (sex determining region Y)-box 5##BC065532|SOX5|6660|SRY (sex determining region Y)-box 5##AB081589|SOX5|6660|SRY (sex determining region Y)-box 5##NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5##AB081588|SOX5|6660|SRY (sex determining region Y)-box 5##NM_152989|SOX5|6660|SRY (sex determining region Y)-box 5##BC060773|SOX5|6660|SRY (sex determining region Y)-box 5##BC104436|LINC00477|144360|long intergenic non-protein coding RNA 477##BC104437|LINC00477|144360|long intergenic non-protein coding RNA 477##AK057456|LINC00477|144360|long intergenic non-protein coding RNA 477##CR749308|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC033864|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178094|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic	0.989764	0.0	
chr22	40831915	40832037	reg1007152.p1	5.733	+	TSC_hg19_v1_chr22_+_40766652 AK301042	-65321	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-65335	+	TSC_hg19_v1_chr22_+_40766634 AK297599	-65344	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	27454	-	TSC_hg19_v1_chr22_-_41032681 AF368061	200677	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	200728	-	AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AK297599|SGSM3|27352|small G protein signaling modulator 3##AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1	0.993876	0.0	denovo_WM_7:-24:0.248	denovo_WM_7:-25:0.248	denovo_WM_7:-26:0.248	denovo_WM_7:-27:0.248
chr7	69497769	69497903	reg1008516.p1	5.733	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-433248	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-433507	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-434000	+	TSC_hg19_v1_chr7_+_70231164 AK296981	733369	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1099952	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2303942	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.995526	0.0	denovo_WM_7:40:0.460	denovo_WM_7:41:0.536
chr8	121306616	121306716	reg1003029.p2	5.733	+	TSC_hg19_v1_chr8_+_121137341 NM_021110 Y11709 AK293080 AK307716 AK311498	-169311	+	NM_022783 TSC_hg19_v1_chr8_+_120885965 AK315175 AK225168 AK297822 AL136678 AK225675 BC024746 AK022490 BC012040 AM392576 AM393333 AB527130 AK023916	-420662	+	DQ891267 DQ894455 TSC_hg19_v1_chr8_-_120868155 AK315356 AK074355 BC001531 AY358866 AK054585 BC001316 NM_024094	-438552	-	CU692406 DQ893117 DQ893487 DQ896395 AK307322 TSC_hg19_v1_chr8_-_121457370 AB049640 AF112214 BC009190	150689	-	TSC_hg19_v1_chr8_-_121457391 AK311924	150727	-	BC021744 NM_014078	150969	-	NM_021110|COL14A1|7373|collagen, type XIV, alpha 1##Y11709|COL14A1|7373|collagen, type XIV, alpha 1##AK293080|COL14A1|7373|collagen, type XIV, alpha 1##AK307716|COL14A1|7373|collagen, type XIV, alpha 1##AK311498|COL14A1|7373|collagen, type XIV, alpha 1##NM_022783|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK315175|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225168|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK297822|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AL136678|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225675|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC024746|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK022490|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC012040|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM392576|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM393333|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK023916|DEPTOR|64798|DEP domain containing MTOR-interacting protein##DQ891267|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ894455|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK315356|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK074355|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001531|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AY358866|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK054585|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001316|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##NM_024094|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ893117|MRPL13|28998|mitochondrial ribosomal protein L13##DQ893487|MRPL13|28998|mitochondrial ribosomal protein L13##DQ896395|MRPL13|28998|mitochondrial ribosomal protein L13##AK307322|MRPL13|28998|mitochondrial ribosomal protein L13##AB049640|MRPL13|28998|mitochondrial ribosomal protein L13##AF112214|MRPL13|28998|mitochondrial ribosomal protein L13##BC009190|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13	0.999051	0.0	denovo_WM_7:15:0.310	denovo_WM_7:16:0.310	denovo_WM_7:17:0.310
chr8	8130788	8130940	reg1010750.p1	5.733	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-44722	+	AK292586 NM_001193630	-347006	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-378660	+	TSC_hg19_v1_chr8_-_8175862 AF075060	45024	-	AK122582 NM_001080826	108358	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	428834	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	0.0	0.941483	CTCF.p2:26:0.941
chr12	25105158	25105338	reg1005777.p1	5.732	+	TSC_hg19_v1_chr12_-_25102303 AK056255 NM_001178091 NM_001178092 NM_005504	-2912	-	TSC_hg19_v1_chr12_-_25102021 BX647122 AK128527	-3228	-	TSC_hg19_v1_chr12_-_25101988 AK299088	-3292	-	BC035880 NM_001101339 BC046192 BC062789	45164	-	NM_001204126 NM_001204127 NM_006152	99932	+	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	100332	+	AK056255|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178091|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178092|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_005504|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BX647122|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK128527|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK299088|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein	0.993198	0.0	
chr14	75716407	75716561	reg1007987.p2	5.732	+	TSC_hg19_v1_chr14_-_75643341 NM_006827	-73132	-	BC001496 BC001825 TSC_hg19_v1_chr14_-_75643334	-73151	-	TSC_hg19_v1_chr14_-_75643322 AK296800 AK312384	-73164	-	NM_005252 TSC_hg19_v1_chr14_+_75745530 AK097379 AK291326 AK298659 BX647104 BC004490 S65138 DQ893444 DQ896750 AB385594 CR541785 CR542267 CU678740	29098	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	178157	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	178529	+	NM_006827|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001496|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001825|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK296800|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK312384|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##NM_005252|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK097379|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK291326|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK298659|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BX647104|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BC004490|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##S65138|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ893444|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ896750|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR541785|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR542267|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2	0.911353	0.0	denovo_WM_7:7:0.807
chr16	18936719	18936852	reg1006606.p1	5.732	+	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-124003	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-135130	-	TSC_hg19_v1_chr16_-_18798077 AK127316	-138689	-	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	946	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	58534	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	58773	+	AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7	0.78617	0.0	denovo_WM_7:14:0.638
chr16	48666289	48666412	reg1006655.p1	5.732	+	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	-22234	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-247098	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-266559	-	AB527638 TSC_hg19_v1_chr16_-_49315397	649043	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	649150	-	M58583 TSC_hg19_v1_chr16_-_49315772 AK314276 NM_004352	649384	-	BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor##M58583|CBLN1|869|cerebellin 1 precursor##AK314276|CBLN1|869|cerebellin 1 precursor##NM_004352|CBLN1|869|cerebellin 1 precursor	0.989798	0.0	denovo_WM_7:-25:0.236	denovo_WM_7:-26:0.236	denovo_WM_7:-27:0.236	denovo_WM_7:-28:0.236
chr1	44459285	44459437	reg1008605.p1	5.731	+	TSC_hg19_v1_chr1_+_44457497 CU689784 AY487420	-1835	+	TSC_hg19_v1_chr1_+_44457322 BC033868 NM_152499 BX641142 BC047313	-2075	+	NM_001005417	-13185	+	NM_006934 NM_201649 S70609 S70612 AK315233	23642	-	TSC_hg19_v1_chr1_-_44497033 AK304057 AK298611	37681	-	TSC_hg19_v1_chr1_-_44497141 AK315933 NM_001024845	37778	-	AY487420|CCDC24|149473|coiled-coil domain containing 24##BC033868|CCDC24|149473|coiled-coil domain containing 24##NM_152499|CCDC24|149473|coiled-coil domain containing 24##BX641142|CCDC24|149473|coiled-coil domain containing 24##BC047313|CCDC24|149473|coiled-coil domain containing 24##NM_001005417|B4GALT2|8704|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2##NM_006934|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##NM_201649|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##S70609|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##S70612|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##AK315233|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##AK304057|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##AK298611|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##AK315933|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9##NM_001024845|SLC6A9|6536|solute carrier family 6 (neurotransmitter transporter, glycine), member 9	0.997659	0.0	denovo_WM_7:-31:0.238	denovo_WM_7:-32:0.238	denovo_WM_7:-33:0.238	denovo_WM_7:-34:0.238
chr19	770320	770448	reg1006462.p1	5.731	+	TSC_hg19_v1_chr19_+_751132 BC052236 BX648389 BC042125 NM_173481	-19255	+	TSC_hg19_v1_chr19_+_708934 NM_001040134 NM_002579 AK299809 AK315168 BC032449 Y14770	-61435	+	BC137161 BC144505 NM_214710	-74924	-	TSC_hg19_v1_chr19_+_797414 NM_002819 NM_031990 NM_031991 NM_175847 X66975 BC002397 BC023219	27032	+	TSC_hg19_v1_chr19_+_797446 AB208910	27061	+	TSC_hg19_v1_chr19_+_797448 X62006 X65371 X65372	27065	+	BC052236|C19orf21|126353|chromosome 19 open reading frame 21##BX648389|C19orf21|126353|chromosome 19 open reading frame 21##BC042125|C19orf21|126353|chromosome 19 open reading frame 21##NM_173481|C19orf21|126353|chromosome 19 open reading frame 21##NM_001040134|PALM|5064|paralemmin##NM_002579|PALM|5064|paralemmin##AK315168|PALM|5064|paralemmin##BC032449|PALM|5064|paralemmin##Y14770|PALM|5064|paralemmin##BC137161|PRSS57|400668|protease, serine, 57##BC144505|PRSS57|400668|protease, serine, 57##NM_214710|PRSS57|400668|protease, serine, 57##NM_002819|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031990|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031991|PTBP1|5725|polypyrimidine tract binding protein 1##NM_175847|PTBP1|5725|polypyrimidine tract binding protein 1##X66975|PTBP1|5725|polypyrimidine tract binding protein 1##BC002397|PTBP1|5725|polypyrimidine tract binding protein 1##BC023219|PTBP1|5725|polypyrimidine tract binding protein 1##AB208910|PTBP1|5725|polypyrimidine tract binding protein 1##X62006|PTBP1|5725|polypyrimidine tract binding protein 1##X65371|PTBP1|5725|polypyrimidine tract binding protein 1##X65372|PTBP1|5725|polypyrimidine tract binding protein 1	0.995506	0.999359	CTCF.p2:42:0.999
chr9	42255776	42255866	reg1003638.p5	5.730	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-300907	-	BC040528 NM_001113541 NM_015667	-755143	+	BC040528 NM_001113541 NM_015667 NM_001242613	-928442	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	112537	+	NM_001099279 NM_199244	461412	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	877666	-	BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2	0.986342	0.0	
chr11	133139377	133139533	reg1007138.p2	5.729	+	AK314077 EU562295 EU562297 AK316491 TSC_hg19_v1_chr11_-_132813671	-325850	-	EU562299 BC117254 BC126251 BC143945 BC143946 BC074742 BC074773 L34774 NM_002545 AK289695	-326441	-	TSC_hg19_v1_chr11_+_131781303 EF043567 BC050716 CU690778	-1358116	+	AK315859 AK315859 TSC_hg19_v1_chr11_-_133402298 BX537377 NM_001012393	262859	-	AF521713 AK098717 NM_174927 BC058039	575926	-	NM_014987 TSC_hg19_v1_chr11_-_133826886	687427	-	AK314077|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562295|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562297|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK316491|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562299|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC117254|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC126251|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143945|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143946|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074742|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074773|OPCML|4978|opioid binding protein/cell adhesion molecule-like##L34774|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_002545|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK289695|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EF043567|NTM|50863|neurotrimin##BC050716|NTM|50863|neurotrimin##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BX537377|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_001012393|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AF521713|SPATA19|219938|spermatogenesis associated 19##AK098717|SPATA19|219938|spermatogenesis associated 19##NM_174927|SPATA19|219938|spermatogenesis associated 19##BC058039|SPATA19|219938|spermatogenesis associated 19##NM_014987|IGSF9B|22997|immunoglobulin superfamily, member 9B	0.252034	0.0	
chr1	161261474	161261614	reg1007157.p2	5.727	+	BC028905 NM_001102566 TSC_hg19_v1_chr1_+_161228534 BC067884 BC147003 BC147004	-32979	+	AK310773 AY572806 AY572807 AY572808 AY572809 AY572810 AY572811 AY572812 AY572813 AY572814 AY572815 AY572816 AY572817 AY572818 AY572819 AY572820 AY572821 AY572822 AY572823 AY572824 AY572825 AY572826 AY572827 BC121120 BC121121 BC030972 BC069626 BC069651 AK316208 AK303757 NM_001077469 NM_001077470 NM_001077471 NM_001077472 NM_001077473 NM_001077474 NM_001077475 NM_001077476 NM_001077477 NM_001077478 NM_001077479 NM_001077480 NM_001077481 NM_001077482 NM_005122 AK303796	-53588	-	NM_032174 TSC_hg19_v1_chr1_+_161195849 AK022832 AK027704 AK297848 BX537951 AK297831	-65687	+	BT006765 DQ895885 EU176378 S66705 D10537 BC006491 AK313555 TSC_hg19_v1_chr1_-_161279760 NM_000530	18198	-	NM_001035511 NM_001035512 NM_001035513 NM_003001 TSC_hg19_v1_chr1_+_161284170 AK131051 AK293687 AK294305 BC020808 BC066329 U57877 AB211234 AB211235 AB201252 AB212048 BC012735 BC033626 D49737	22635	+	NM_001013625	76119	-	BC028905|PCP4L1|654790|Purkinje cell protein 4 like 1##NM_001102566|PCP4L1|654790|Purkinje cell protein 4 like 1##BC067884|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147003|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147004|PCP4L1|654790|Purkinje cell protein 4 like 1##AK310773|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572806|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572807|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572808|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572809|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572810|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572811|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572812|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572813|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572814|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572815|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572816|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572817|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572818|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572819|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572820|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572821|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572822|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572823|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572824|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572825|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572826|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AY572827|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121120|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC121121|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC030972|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069626|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##BC069651|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK316208|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303757|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077469|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077470|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077471|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077472|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077473|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077474|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077475|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077476|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077477|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077478|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077479|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077480|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077481|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_001077482|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_005122|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##AK303796|NR1I3|9970|nuclear receptor subfamily 1, group I, member 3##NM_032174|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK022832|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK027704|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297848|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BX537951|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##AK297831|TOMM40L|84134|translocase of outer mitochondrial membrane 40 homolog (yeast)-like##BT006765|MPZ|4359|myelin protein zero##DQ895885|MPZ|4359|myelin protein zero##EU176378|MPZ|4359|myelin protein zero##S66705|MPZ|4359|myelin protein zero##D10537|MPZ|4359|myelin protein zero##BC006491|MPZ|4359|myelin protein zero##AK313555|MPZ|4359|myelin protein zero##NM_000530|MPZ|4359|myelin protein zero##NM_001035511|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001035512|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001035513|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_003001|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK131051|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK293687|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK294305|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC020808|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC066329|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##U57877|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB211234|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB211235|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB201252|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB212048|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC012735|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC033626|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##D49737|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001013625|C1orf192|257177|chromosome 1 open reading frame 192	0.0	0.279774	CTCF.p2:-22:0.280
chr2	172397198	172397325	reg1008395.p2	5.727	+	TSC_hg19_v1_chr2_+_172379020 NM_001127383 NM_024843 AK128495 AK316588 AL136693 BC016900 AK291731 AK027115 AK225459 BC065290 HQ257890	-18306	+	AK301485 TSC_hg19_v1_chr2_+_172378762	-18502	+	TSC_hg19_v1_chr2_-_172374248 AB055776	-23015	-	TSC_hg19_v1_chr2_+_172543981 BX537412 AK055491 NM_001378 AK225759 BC091498 AY037160 AK308008 AK298561	146763	+	TSC_hg19_v1_chr2_+_172544264 AK096579 AK075323 AF250307 BC109375 AF134477 AK316119 BC015038	147030	+	AB527259 DQ891540 EU176607 TSC_hg19_v1_chr2_-_172750755 AK091071 BC016932 AJ496568 Y14494 AK022828 AK294638 NM_003705	353522	-	NM_001127383|CYBRD1|79901|cytochrome b reductase 1##NM_024843|CYBRD1|79901|cytochrome b reductase 1##AK128495|CYBRD1|79901|cytochrome b reductase 1##AK316588|CYBRD1|79901|cytochrome b reductase 1##AL136693|CYBRD1|79901|cytochrome b reductase 1##BC016900|CYBRD1|79901|cytochrome b reductase 1##AK291731|CYBRD1|79901|cytochrome b reductase 1##AK027115|CYBRD1|79901|cytochrome b reductase 1##AK225459|CYBRD1|79901|cytochrome b reductase 1##BC065290|CYBRD1|79901|cytochrome b reductase 1##HQ257890|CYBRD1|79901|cytochrome b reductase 1##AK301485|CYBRD1|79901|cytochrome b reductase 1##BX537412|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK055491|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##NM_001378|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK225759|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC091498|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AY037160|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK308008|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK298561|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK096579|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK075323|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AF250307|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC109375|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AF134477|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK316119|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC015038|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##DQ891540|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##EU176607|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK091071|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##BC016932|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AJ496568|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##Y14494|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK022828|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK294638|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##NM_003705|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	1.028569	0.0	denovo_WM_7:28:0.456	denovo_WM_7:29:0.456
chr19	17163363	17163505	reg1007790.p2	5.725	+	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-25894	-	AK075099 TSC_hg19_v1_chr19_-_17014494	-148981	-	AK092632 TSC_hg19_v1_chr19_-_17007756 AK124052	-155686	-	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	22887	-	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	23159	+	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	162738	+	AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK075099|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK092632|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK124052|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	0.996563	0.678306	CTCF.p2:32:0.678	denovo_WM_7:-39:0.997
chr2	12211380	12211516	reg1000270.p1	5.725	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-324673	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-401157	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-528605	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	645805	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	646468	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	646949	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.0	0.0	
chr2	44471321	44471422	reg1007132.p2	5.725	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-75261	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-75356	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-248232	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	31264	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	115499	-	DQ023503 DQ023504 DQ023505 NM_006036	116441	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.970077	0.996235	CTCF.p2:-5:0.996	denovo_WM_7:-52:0.944
chr4	22486196	22486347	reg1007020.p1	5.725	+	NM_147182 TSC_hg19_v1_chr4_-_21950396	-535887	-	BX648990 DQ148490 NM_001035003	-786954	-	DQ148491 NM_001035004	-939993	-	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	31283	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	208321	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1405382	-	NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	0.998652	0.0	denovo_WM_7:-33:0.457	denovo_WM_7:-34:0.457
chr10	21882859	21882992	reg1009191.p1	5.723	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-59300	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-59531	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-59649	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	409524	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	409740	-	NM_001199938	615986	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	1.994153	0.0	denovo_WM_7:-45:0.424	denovo_WM_7:-46:0.290	denovo_WM_7:-61:0.293	denovo_WM_7:-62:0.427
chr1	184722430	184722610	reg1007116.p1	5.723	+	TSC_hg19_v1_chr1_+_184356377 AK056487	-366132	+	AF312864 TSC_hg19_v1_chr1_+_184356245 AY258286	-366254	+	TSC_hg19_v1_chr1_+_184356194 BC028567	-366323	+	BC144149 BC144150 AF288393 TSC_hg19_v1_chr1_-_184723746 AB385131	1237	-	TSC_hg19_v1_chr1_-_184723964 BC070173 BC105586	1445	-	AK225171 TSC_hg19_v1_chr1_-_184723985 AK315118	1464	-	AK056487|C1orf21|81563|chromosome 1 open reading frame 21##AF312864|C1orf21|81563|chromosome 1 open reading frame 21##AY258286|C1orf21|81563|chromosome 1 open reading frame 21##BC028567|C1orf21|81563|chromosome 1 open reading frame 21##BC144149|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC144150|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AF288393|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC070173|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC105586|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK225171|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK315118|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3	0.99961	0.0	denovo_WM_7:29:0.443	denovo_WM_7:30:0.443
chr9	80580429	80580609	reg1008404.p1	5.723	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-317288	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-612171	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-788011	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	65665	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	270511	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	331539	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.766397	0.0	denovo_WM_7:-96:0.728
chr11	47235724	47235904	reg1009538.p1	5.722	+	BC007914 AF149825 TSC_hg19_v1_chr11_-_47207959 AF242530 AK300658 BC011889 NM_001184974 NM_016223	-27832	-	AK300968 AK000577 NM_001184975	-28386	-	NM_001242832 NM_032389	-37139	-	NM_000107 U18300 TSC_hg19_v1_chr11_+_47236524 AK313262 BC050455 AK091640 AX747106 BC000093 AB527602 AB107037 AB107038 AB107039 AB107040 BT007139 CU674030 DQ890719	775	+	AK311590 NM_001251934 NM_001251935 AK302132	34041	+	AK298439 TSC_hg19_v1_chr11_-_47270266	34408	-	BC007914|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF149825|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF242530|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300658|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##BC011889|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184974|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_016223|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300968|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK000577|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184975|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001242832|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_032389|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_000107|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##U18300|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK313262|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC050455|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK091640|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC000093|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107037|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107038|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107039|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107040|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BT007139|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##DQ890719|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK311590|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##NM_001251934|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##NM_001251935|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##AK302132|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##AK298439|ACP2|53|acid phosphatase 2, lysosomal	1.082741	0.0	
chr11	71704802	71704911	reg1006242.p1	5.722	+	TSC_hg19_v1_chr11_+_71640092 AL833638 AK023139 AK094508 CR457298 BC009672 BC093084 BC117273	-64745	+	NM_018320	-65089	+	NM_001242853	-115358	+	TSC_hg19_v1_chr11_+_71709954 NM_001039659 NM_001039660 NM_173044 AF215907 BC044215 AF110801 NM_005699 NM_173042	5173	+	NM_001145057 AF122906	5819	+	AF110799 AF110800 NM_001145055 AB590783 CU692186 AB019504	6144	+	AL833638|RNF121|55298|ring finger protein 121##AK023139|RNF121|55298|ring finger protein 121##AK094508|RNF121|55298|ring finger protein 121##CR457298|RNF121|55298|ring finger protein 121##BC009672|RNF121|55298|ring finger protein 121##BC093084|RNF121|55298|ring finger protein 121##BC117273|RNF121|55298|ring finger protein 121##NM_018320|RNF121|55298|ring finger protein 121##NM_001242853|LOC100129216|100129216|beta-defensin 131-like##NM_001039659|IL18BP|10068|interleukin 18 binding protein##NM_001039660|IL18BP|10068|interleukin 18 binding protein##NM_173044|IL18BP|10068|interleukin 18 binding protein##AF215907|IL18BP|10068|interleukin 18 binding protein##BC044215|IL18BP|10068|interleukin 18 binding protein##AF110801|IL18BP|10068|interleukin 18 binding protein##NM_005699|IL18BP|10068|interleukin 18 binding protein##NM_173042|IL18BP|10068|interleukin 18 binding protein##NM_001145057|IL18BP|10068|interleukin 18 binding protein##AF122906|IL18BP|10068|interleukin 18 binding protein##AF110799|IL18BP|10068|interleukin 18 binding protein##AF110800|IL18BP|10068|interleukin 18 binding protein##NM_001145055|IL18BP|10068|interleukin 18 binding protein##AB019504|IL18BP|10068|interleukin 18 binding protein	0.998994	0.0	denovo_WM_7:39:0.310	denovo_WM_7:40:0.310	denovo_WM_7:41:0.310
chr10	119262738	119262894	reg1009013.p1	5.721	+	CU688476 TSC_hg19_v1_chr10_-_119134939 BC012186 BC028375 NM_173791 AK091746 AX747159 BC033019	-127935	-	NM_003054 BC030593 TSC_hg19_v1_chr10_+_119000626 AK314997 L23205 L09118 X71354 L14269 BC108927 BC108928	-262166	+	AB087138 AB464053 NM_181840	-305817	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	39100	-	AF301598 NM_001165924 NM_004098	39139	+	TSC_hg19_v1_chr10_+_119302713 AB463605	39927	+	BC012186|PDZD8|118987|PDZ domain containing 8##BC028375|PDZD8|118987|PDZ domain containing 8##NM_173791|PDZD8|118987|PDZ domain containing 8##AK091746|PDZD8|118987|PDZ domain containing 8##BC033019|PDZD8|118987|PDZ domain containing 8##NM_003054|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC030593|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##AK314997|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L23205|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L09118|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##X71354|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L14269|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC108927|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC108928|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##AB087138|KCNK18|338567|potassium channel, subfamily K, member 18##NM_181840|KCNK18|338567|potassium channel, subfamily K, member 18##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2	0.987277	0.0171	denovo_WM_7:-33:0.987
chr17	30215259	30215412	reg1007057.p2	5.721	+	AF407672 AJ272196 TSC_hg19_v1_chr17_-_30186264 AK024772 BC012386 BC035483 NM_018405	-29064	-	TSC_hg19_v1_chr17_+_29815032 AK097424	-400274	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	-496471	+	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	13331	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	13396	-	TSC_hg19_v1_chr17_-_30228769 AK299806	13429	-	AF407672|C17orf79|55352|chromosome 17 open reading frame 79##AJ272196|C17orf79|55352|chromosome 17 open reading frame 79##AK024772|C17orf79|55352|chromosome 17 open reading frame 79##BC012386|C17orf79|55352|chromosome 17 open reading frame 79##BC035483|C17orf79|55352|chromosome 17 open reading frame 79##NM_018405|C17orf79|55352|chromosome 17 open reading frame 79##AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)	0.987981	0.0	denovo_WM_7:-52:0.700
chr6	34361509	34361619	reg1008141.p1	5.721	+	TSC_hg19_v1_chr6_-_34360442 NM_006703	-1113	-	TSC_hg19_v1_chr6_-_34360425 BC007727	-1144	-	TSC_hg19_v1_chr6_-_34360360 AK313440	-1229	-	TSC_hg19_v1_chr6_-_34393847 NM_001203245 U14972 BC070235 BC001032 BC071946 AK311797 NM_001014 NM_001202470 NM_001204091	32285	-	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	72340	+	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	121090	+	NM_006703|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BC007727|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AK313440|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##NM_001203245|RPS10|6204|ribosomal protein S10##U14972|RPS10|6204|ribosomal protein S10##BC070235|RPS10|6204|ribosomal protein S10##BC001032|RPS10|6204|ribosomal protein S10##BC071946|RPS10|6204|ribosomal protein S10##AK311797|RPS10|6204|ribosomal protein S10##NM_001014|RPS10|6204|ribosomal protein S10##NM_001202470|RPS10-NUDT3|100529239|RPS10-NUDT3 readthrough##NM_001204091|RPS10|6204|ribosomal protein S10##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1	0.0	0.0	
chr7	32731777	32731957	reg1000240.p2	5.721	+	TSC_hg19_v1_chr7_+_32535168 AK090619 AX746537 NM_015060 BC027724 CU693288	-196637	+	TSC_hg19_v1_chr7_+_32535132 AL833560	-196772	+	NM_001130710 NM_001139499	-196998	-	TSC_hg19_v1_chr7_+_32767741 AK094370 BC126382 BC126384	35871	+	AK292802 BC047107 TSC_hg19_v1_chr7_-_32931241	199394	-	TSC_hg19_v1_chr7_-_32931372 BC037887	199502	-	AK090619|AVL9|23080|AVL9 homolog (S. cerevisiase)##NM_015060|AVL9|23080|AVL9 homolog (S. cerevisiase)##BC027724|AVL9|23080|AVL9 homolog (S. cerevisiase)##AL833560|AVL9|23080|AVL9 homolog (S. cerevisiase)##NM_001130710|LSM5|23658|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001139499|LSM5|23658|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK094370|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126382|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126384|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##AK292802|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC047107|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC037887|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2	0.0	0.0	
chr10	73848315	73848459	reg1007456.p1	5.720	+	TSC_hg19_v1_chr10_-_73848310 AJ001453	-47	-	TSC_hg19_v1_chr10_-_73848286 AY358921	-105	-	AK292328 TSC_hg19_v1_chr10_-_73848270 AK294008 AK307091	-119	-	BC023558 NM_001244950	143	-	D87465 TSC_hg19_v1_chr10_-_73848773 NM_001134434 NM_014767	390	-	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	127377	-	AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AY358921|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK292328|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK294008|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK307091|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##BC023558|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_001244950|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##D87465|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_001134434|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_014767|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1	0.998371	0.0	denovo_WM_7:0:0.229	denovo_WM_7:1:0.229	denovo_WM_7:2:0.229	denovo_WM_7:3:0.229
chr14	54956001	54956181	reg1000099.p2	5.720	+	TSC_hg19_v1_chr14_-_54955728 AB001106 BX647679 NM_004124	-336	-	TSC_hg19_v1_chr14_-_54955693 M86492 AB209240 AK311753 BC005359	-406	-	TSC_hg19_v1_chr14_-_54908095 BX248284 AY358635 AK074781 AK307074 AK311897 AF070654 AF104398 NM_005776 BC103741	-47975	-	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	20520	+	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	78253	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	78545	+	AB001106|GMFB|2764|glia maturation factor, beta##BX647679|GMFB|2764|glia maturation factor, beta##NM_004124|GMFB|2764|glia maturation factor, beta##M86492|GMFB|2764|glia maturation factor, beta##AB209240|GMFB|2764|glia maturation factor, beta##AK311753|GMFB|2764|glia maturation factor, beta##BC005359|GMFB|2764|glia maturation factor, beta##BX248284|CNIH|10175|cornichon homolog (Drosophila)##AY358635|CNIH|10175|cornichon homolog (Drosophila)##AK074781|CNIH|10175|cornichon homolog (Drosophila)##AK307074|CNIH|10175|cornichon homolog (Drosophila)##AK311897|CNIH|10175|cornichon homolog (Drosophila)##AF070654|CNIH|10175|cornichon homolog (Drosophila)##AF104398|CNIH|10175|cornichon homolog (Drosophila)##NM_005776|CNIH|10175|cornichon homolog (Drosophila)##BC103741|CNIH|10175|cornichon homolog (Drosophila)##AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A	0.0	0.0	
chr16	81855562	81855735	reg1000866.p2	5.720	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-42718	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-42746	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-42751	+	BC019670 AK315652 AK026740 NM_145168	189420	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	213213	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	213284	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.239039	0.0	
chr5	14520994	14521131	reg1006226.p1	5.720	+	TSC_hg19_v1_chr5_+_14488527 AK131423	-32523	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-377390	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-509192	-	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	60838	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	60902	+	AK123396 TSC_hg19_v1_chr5_-_14664742	143665	-	AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A##AK123396|LOC728178|728178|uncharacterized LOC728178	0.995621	0.0	
chr8	71132585	71132735	reg1008255.p1	5.720	+	TSC_hg19_v1_chr8_-_70983549 AF319458 AK022595 NM_024504	-149105	-	TSC_hg19_v1_chr8_-_70983468 BC052311	-149189	-	AK308488 AF205075 AK096879 NM_030958	-385411	-	BC092442 TSC_hg19_v1_chr8_-_71315599	182887	-	TSC_hg19_v1_chr8_-_71316041 NM_006540 X97674 AK308426	183366	-	BT007359 CR541654 CR541739 DQ892688 DQ895932 TSC_hg19_v1_chr8_-_71520586 AK292777 BC020283 BC000687 AK289397 X63679 BC037738	387862	-	AF319458|PRDM14|63978|PR domain containing 14##AK022595|PRDM14|63978|PR domain containing 14##NM_024504|PRDM14|63978|PR domain containing 14##BC052311|PRDM14|63978|PR domain containing 14##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC092442|NCOA2|10499|nuclear receptor coactivator 2##NM_006540|NCOA2|10499|nuclear receptor coactivator 2##X97674|NCOA2|10499|nuclear receptor coactivator 2##AK308426|NCOA2|10499|nuclear receptor coactivator 2##BT007359|TRAM1|23471|translocation associated membrane protein 1##CR541654|TRAM1|23471|translocation associated membrane protein 1##CR541739|TRAM1|23471|translocation associated membrane protein 1##DQ892688|TRAM1|23471|translocation associated membrane protein 1##DQ895932|TRAM1|23471|translocation associated membrane protein 1##AK292777|TRAM1|23471|translocation associated membrane protein 1##BC020283|TRAM1|23471|translocation associated membrane protein 1##BC000687|TRAM1|23471|translocation associated membrane protein 1##AK289397|TRAM1|23471|translocation associated membrane protein 1##X63679|TRAM1|23471|translocation associated membrane protein 1##BC037738|TRAM1|23471|translocation associated membrane protein 1	0.0	0.0	
chr2	65141493	65141652	reg1007801.p1	5.719	+	TSC_hg19_v1_chr2_-_65090764 AK097952	-50831	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-260525	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-260723	-	TSC_hg19_v1_chr2_-_65159574 BC037562	18005	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	74028	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	74919	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.999967	0.0	denovo_WM_7:10:0.457	denovo_WM_7:11:0.457
chr6	36482938	36483075	reg1008373.p2	5.719	+	TSC_hg19_v1_chr6_+_36410807 BC023525 AK302861 AK304377	-72174	+	AY305862 NM_173562 TSC_hg19_v1_chr6_+_36410797 AK295717 AK316456	-72336	+	BC031105 NM_152990	-72341	-	TSC_hg19_v1_chr6_-_36515239 AK312559	32146	-	TSC_hg19_v1_chr6_-_36515255 BC012085 NM_007271 BC095413	32251	-	NM_003017 TSC_hg19_v1_chr6_+_36562093	79085	+	BC023525|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK302861|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK304377|KCTD20|222658|potassium channel tetramerisation domain containing 20##AY305862|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_173562|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK295717|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK316456|KCTD20|222658|potassium channel tetramerisation domain containing 20##BC031105|PXT1|222659|peroxisomal, testis specific 1##NM_152990|PXT1|222659|peroxisomal, testis specific 1##AK312559|STK38|11329|serine/threonine kinase 38##BC012085|STK38|11329|serine/threonine kinase 38##NM_007271|STK38|11329|serine/threonine kinase 38##BC095413|STK38|11329|serine/threonine kinase 38##NM_003017|SRSF3|6428|serine/arginine-rich splicing factor 3	0.934529	0.0	denovo_WM_7:-15:0.467	denovo_WM_7:-16:0.467
chr1	210570968	210571148	reg1000633.p2	5.718	+	NM_001170580 BC051191	-68417	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-68793	+	NM_001122834 NM_001170564 AK297193	-69462	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	736327	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	861650	+	TSC_hg19_v1_chr1_+_211432726 AK131312	861669	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.0	0.0	
chr21	30603785	30603874	reg1009021.p1	5.718	+	TSC_hg19_v1_chr21_+_30517918 AK309998 EF219160	-85919	+	AY171599 NM_020152	-150957	+	AK308063 TSC_hg19_v1_chr21_-_30445995 AK298801 BC072001 BC005220 NM_006585	-157840	-	TSC_hg19_v1_chr21_+_30671158 AK291021 AB002803	67335	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	67391	+	TSC_hg19_v1_chr21_+_30671242 AK313791 BC063307	67412	+	AK309998|C21orf7|56911|chromosome 21 open reading frame 7##EF219160|C21orf7|56911|chromosome 21 open reading frame 7##AY171599|C21orf7|56911|chromosome 21 open reading frame 7##NM_020152|C21orf7|56911|chromosome 21 open reading frame 7##AK308063|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK298801|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC072001|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC005220|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##NM_006585|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK291021|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AB002803|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AK313791|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##BC063307|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1	0.997657	0.0	denovo_WM_7:51:0.817
chr5	149535500	149535678	reg1009856.p3	5.718	+	BC032224 AB209657 NM_002609 TSC_hg19_v1_chr5_-_149535428	-165	-	J03278 M30493 TSC_hg19_v1_chr5_-_149535344	-254	-	M21616 TSC_hg19_v1_chr5_-_149535251 AK293093	-385	-	TSC_hg19_v1_chr5_+_149546340 NM_001804 AF239666 U51095 BC096249 BC096250 BC096251 BC096252 BC127122 AB463469	10799	+	AK096607 NM_014228 TSC_hg19_v1_chr5_+_149569631 AK312309 AK308895	33995	+	TSC_hg19_v1_chr5_+_149569812 BC093785 BC113425 BC069631 HQ258340 S80071	34261	+	BC032224|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##AB209657|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##NM_002609|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##J03278|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##M30493|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##M21616|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##AK293093|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##NM_001804|CDX1|1044|caudal type homeobox 1##AF239666|CDX1|1044|caudal type homeobox 1##U51095|CDX1|1044|caudal type homeobox 1##BC096249|CDX1|1044|caudal type homeobox 1##BC096250|CDX1|1044|caudal type homeobox 1##BC096251|CDX1|1044|caudal type homeobox 1##BC096252|CDX1|1044|caudal type homeobox 1##BC127122|CDX1|1044|caudal type homeobox 1##AK096607|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##NM_014228|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##AK312309|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##AK308895|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##BC093785|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##BC113425|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##BC069631|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##HQ258340|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7##S80071|SLC6A7|6534|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	0.136332	0.0	
chr5	43042496	43042650	reg1009164.p3	5.718	+	AB463523 BC067873 AY032883 NM_001014279	-2277	-	TSC_hg19_v1_chr5_-_42993436 AK056817	-49127	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-230582	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	78428	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	79041	+	AK057343 NM_003432 TSC_hg19_v1_chr5_+_43121669 AK310735 BC017923	79111	+	BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131##AK057343|ZNF131|7690|zinc finger protein 131##NM_003432|ZNF131|7690|zinc finger protein 131##AK310735|ZNF131|7690|zinc finger protein 131##BC017923|ZNF131|7690|zinc finger protein 131	0.037748	0.0	
chr21	45144775	45144911	reg1005264.p2	5.717	+	U89606 CU674050 AB529123 TSC_hg19_v1_chr21_+_45139241	-5636	+	TSC_hg19_v1_chr21_+_45139035 AB621819	-5810	+	TSC_hg19_v1_chr21_+_45138987 BC000123	-5854	+	TSC_hg19_v1_chr21_+_45161415 AY303972	16545	+	AL110184 TSC_hg19_v1_chr21_+_45178006	33091	+	BT007040 CR542148 DQ890923 DQ894073 TSC_hg19_v1_chr21_-_45196190 AK312133 BC003370	51328	-	U89606|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##BC000123|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##AY303972|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##AL110184|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##BT007040|CSTB|1476|cystatin B (stefin B)##CR542148|CSTB|1476|cystatin B (stefin B)##DQ890923|CSTB|1476|cystatin B (stefin B)##DQ894073|CSTB|1476|cystatin B (stefin B)##AK312133|CSTB|1476|cystatin B (stefin B)##BC003370|CSTB|1476|cystatin B (stefin B)	0.467718	0.0	denovo_WM_7:-13:0.273
chr2	220082418	220082521	reg1000438.p1	5.717	+	TSC_hg19_v1_chr2_+_220071949 AK074571	-10515	+	TSC_hg19_v1_chr2_+_220071528 AK091345 AX746924 AK292622 AK293714 BC018415 NM_138802	-10895	+	TSC_hg19_v1_chr2_+_220043005 BC002420	-39405	+	AF076775 DQ891876 DQ895063 CU674272 TSC_hg19_v1_chr2_-_220083433	945	-	AK057026 BC000559 AJ289233 AK303230 TSC_hg19_v1_chr2_-_220083681	1205	-	TSC_hg19_v1_chr2_-_220083702 NM_005689	1236	-	AK074571|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK091345|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK292622|ZFAND2B|130617|zinc finger, AN1-type domain 2B##AK293714|ZFAND2B|130617|zinc finger, AN1-type domain 2B##BC018415|ZFAND2B|130617|zinc finger, AN1-type domain 2B##NM_138802|ZFAND2B|130617|zinc finger, AN1-type domain 2B##BC002420|FAM134A|79137|family with sequence similarity 134, member A##AF076775|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##DQ891876|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##DQ895063|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AK057026|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##BC000559|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AJ289233|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##AK303230|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6##NM_005689|ABCB6|10058|ATP-binding cassette, sub-family B (MDR/TAP), member 6	0.992366	0.0	denovo_WM_7:-95:0.239	denovo_WM_7:-96:0.753
chr8	22745561	22745714	reg1007806.p2	5.717	+	AK292464 AK313604 X63741 NM_004430 S40832 TSC_hg19_v1_chr8_-_22550853	-194853	-	AB529193 HQ258229 TSC_hg19_v1_chr8_-_22550508 BC112279 BC104765	-195132	-	AK294968 AK295834 NM_001199881	-195563	-	AB590982 AY730275 AY037148 BC020779 AY359109 NM_144962	39687	-	AK092617 BC034917 NM_001160036	99286	+	NM_001160037	107723	+	AK292464|EGR3|1960|early growth response 3##AK313604|EGR3|1960|early growth response 3##X63741|EGR3|1960|early growth response 3##NM_004430|EGR3|1960|early growth response 3##S40832|EGR3|1960|early growth response 3##HQ258229|EGR3|1960|early growth response 3##BC112279|EGR3|1960|early growth response 3##BC104765|EGR3|1960|early growth response 3##AK294968|EGR3|1960|early growth response 3##NM_001199881|EGR3|1960|early growth response 3##AY730275|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY037148|PEBP4|157310|phosphatidylethanolamine-binding protein 4##BC020779|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY359109|PEBP4|157310|phosphatidylethanolamine-binding protein 4##NM_144962|PEBP4|157310|phosphatidylethanolamine-binding protein 4##BC034917|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160036|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160037|RHOBTB2|23221|Rho-related BTB domain containing 2	0.990242	0.014392	denovo_WM_7:39:0.237	denovo_WM_7:40:0.237	denovo_WM_7:41:0.237	denovo_WM_7:42:0.237
chr5	72975387	72975544	reg1007590.p1	5.716	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-53480	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-113883	+	BC012917 TSC_hg19_v1_chr5_-_72861465 AF251051 NM_023039	-114006	-	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	133885	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	960998	-	AK096578 NM_003633	961783	-	AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##BC012917|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AF251051|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##NM_023039|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)	1.946424	0.0	denovo_WM_7:59:0.462	denovo_WM_7:62:0.485
chr10	103949174	103949310	reg1005371.p2	5.715	+	NM_004741 TSC_hg19_v1_chr10_+_103912145 Z34289 AK225101 AK314363 AK056755 BC001883 BC006769 DQ891862 DQ895051 AY820769 D21262	-37191	+	AF325193 NM_015062 TSC_hg19_v1_chr10_+_103892796 AK299885 BC063806 AB011167 BC063829 AK095248 AB384505	-56437	+	TSC_hg19_v1_chr10_-_103879963 NM_001113407	-69099	-	BC034344 NM_152310	36900	+	BC011642 NM_005029	51987	-	NM_001199378 NM_001199379 NM_004193 BC057804 BC068543 TSC_hg19_v1_chr10_+_104005288 BC094763 AK025330 BC032543	56037	+	NM_004741|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##Z34289|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK225101|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK314363|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK056755|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##BC001883|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##BC006769|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##DQ891862|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##DQ895051|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AY820769|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##D21262|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AF325193|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##NM_015062|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##AK299885|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##BC063806|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##AB011167|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##BC063829|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##AK095248|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##NM_001113407|LDB1|8861|LIM domain binding 1##BC034344|ELOVL3|83401|ELOVL fatty acid elongase 3##NM_152310|ELOVL3|83401|ELOVL fatty acid elongase 3##BC011642|PITX3|5309|paired-like homeodomain 3##NM_005029|PITX3|5309|paired-like homeodomain 3##NM_001199378|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_001199379|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_004193|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC094763|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##AK025330|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC032543|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1	0.0	0.0	
chr11	36442576	36442718	reg1007534.p1	5.715	+	NM_001160169	-20101	+	NM_001160168 NM_024841 BX640959 AK024275	-45087	+	NM_001160167 AK055042	-124867	+	TSC_hg19_v1_chr11_-_36531820 U78798 BC031052 AK292978 NM_004620 NM_145803	89167	-	NM_000448 M29474	146921	+	TSC_hg19_v1_chr11_+_36616072 AK290833 DQ121386 AK095997 AK299642 BC009561 BC051031 NM_138787 AK302634	173457	+	NM_001160169|PRR5L|79899|proline rich 5 like##NM_001160168|PRR5L|79899|proline rich 5 like##NM_024841|PRR5L|79899|proline rich 5 like##BX640959|PRR5L|79899|proline rich 5 like##AK024275|PRR5L|79899|proline rich 5 like##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like##U78798|TRAF6|7189|TNF receptor-associated factor 6##BC031052|TRAF6|7189|TNF receptor-associated factor 6##AK292978|TRAF6|7189|TNF receptor-associated factor 6##NM_004620|TRAF6|7189|TNF receptor-associated factor 6##NM_145803|TRAF6|7189|TNF receptor-associated factor 6##NM_000448|RAG1|5896|recombination activating gene 1##M29474|RAG1|5896|recombination activating gene 1##AK290833|C11orf74|119710|chromosome 11 open reading frame 74##DQ121386|C11orf74|119710|chromosome 11 open reading frame 74##AK095997|C11orf74|119710|chromosome 11 open reading frame 74##AK299642|C11orf74|119710|chromosome 11 open reading frame 74##BC009561|C11orf74|119710|chromosome 11 open reading frame 74##BC051031|C11orf74|119710|chromosome 11 open reading frame 74##NM_138787|C11orf74|119710|chromosome 11 open reading frame 74##AK302634|C11orf74|119710|chromosome 11 open reading frame 74	0.0	0.0	
chr12	48496466	48496646	reg1006596.p2	5.715	+	NM_001844 NM_033150 TSC_hg19_v1_chr12_-_48398292	-98268	-	TSC_hg19_v1_chr12_+_48357387 AK310035 AK313698 AK299154 BC107792	-139136	+	TSC_hg19_v1_chr12_+_48357345 NM_001143841 NM_001143842 NM_001143843 NM_024056	-139218	+	TSC_hg19_v1_chr12_-_48499809 BC045639 BX640784 NM_014554 BX537920	3070	-	NM_001166686 AK126229	3124	+	TSC_hg19_v1_chr12_-_48499846 AK292060 AK312874	3409	-	NM_001844|COL2A1|1280|collagen, type II, alpha 1##NM_033150|COL2A1|1280|collagen, type II, alpha 1##AK310035|TMEM106C|79022|transmembrane protein 106C##AK313698|TMEM106C|79022|transmembrane protein 106C##AK299154|TMEM106C|79022|transmembrane protein 106C##BC107792|TMEM106C|79022|transmembrane protein 106C##NM_001143841|TMEM106C|79022|transmembrane protein 106C##NM_001143842|TMEM106C|79022|transmembrane protein 106C##NM_001143843|TMEM106C|79022|transmembrane protein 106C##NM_024056|TMEM106C|79022|transmembrane protein 106C##BC045639|SENP1|29843|SUMO1/sentrin specific peptidase 1##BX640784|SENP1|29843|SUMO1/sentrin specific peptidase 1##NM_014554|SENP1|29843|SUMO1/sentrin specific peptidase 1##BX537920|SENP1|29843|SUMO1/sentrin specific peptidase 1##NM_001166686|PFKM|5213|phosphofructokinase, muscle##AK126229|PFKM|5213|phosphofructokinase, muscle##AK292060|SENP1|29843|SUMO1/sentrin specific peptidase 1##AK312874|SENP1|29843|SUMO1/sentrin specific peptidase 1	0.999414	0.0	
chr2	67690926	67691106	reg1006752.p1	5.715	+	TSC_hg19_v1_chr2_+_67624467 NM_019002 AJ242682 BC033075 BC040001	-66534	+	TSC_hg19_v1_chr2_+_66666452 AK297109	-1024566	+	BC036511 AK314949 TSC_hg19_v1_chr2_+_66662903 U85707 AB527915	-1028176	+	BC016284 TSC_hg19_v1_chr2_-_68290140 X95592 BC009584 BC009589 BC005235 AK290451	599118	-	NM_001190263 NM_001190265 NM_006333 NM_173177 TSC_hg19_v1_chr2_-_68290160	599144	-	CU680746 EU831464 EU831551 EU832799 GQ129363 TSC_hg19_v1_chr2_-_68384660 BC036904 BC014022 AL834142 BC066657 BC020271 AK056303 NM_138458 AY541587 AK058090	693618	-	NM_019002|ETAA1|54465|Ewing tumor-associated antigen 1##AJ242682|ETAA1|54465|Ewing tumor-associated antigen 1##BC033075|ETAA1|54465|Ewing tumor-associated antigen 1##BC040001|ETAA1|54465|Ewing tumor-associated antigen 1##AK297109|MEIS1|4211|Meis homeobox 1##BC036511|MEIS1|4211|Meis homeobox 1##AK314949|MEIS1|4211|Meis homeobox 1##U85707|MEIS1|4211|Meis homeobox 1##BC016284|C1D|10438|C1D nuclear receptor corepressor##X95592|C1D|10438|C1D nuclear receptor corepressor##BC009584|C1D|10438|C1D nuclear receptor corepressor##BC009589|C1D|10438|C1D nuclear receptor corepressor##BC005235|C1D|10438|C1D nuclear receptor corepressor##AK290451|C1D|10438|C1D nuclear receptor corepressor##NM_001190263|C1D|10438|C1D nuclear receptor corepressor##NM_001190265|C1D|10438|C1D nuclear receptor corepressor##NM_006333|C1D|10438|C1D nuclear receptor corepressor##NM_173177|C1D|10438|C1D nuclear receptor corepressor##EU831464|WDR92|116143|WD repeat domain 92##EU831551|WDR92|116143|WD repeat domain 92##EU832799|WDR92|116143|WD repeat domain 92##GQ129363|WDR92|116143|WD repeat domain 92##BC036904|WDR92|116143|WD repeat domain 92##BC014022|WDR92|116143|WD repeat domain 92##AL834142|WDR92|116143|WD repeat domain 92##BC066657|WDR92|116143|WD repeat domain 92##BC020271|WDR92|116143|WD repeat domain 92##AK056303|WDR92|116143|WD repeat domain 92##NM_138458|WDR92|116143|WD repeat domain 92##AY541587|WDR92|116143|WD repeat domain 92##AK058090|WDR92|116143|WD repeat domain 92	0.981571	0.0	denovo_WM_7:-30:0.897
chr5	66606704	66606840	reg1006829.p1	5.715	+	BC109069 BC109070 D83597 NM_005582 AK313177	-114172	-	AY830839 BC018692 NM_015183	-482169	+	TSC_hg19_v1_chr5_+_65892187 NM_001164664 NM_198828 BC033215	-714564	+	TSC_hg19_v1_chr5_+_67511583 NM_181523	904808	+	TSC_hg19_v1_chr5_+_67511602 BC094795	904835	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	977522	+	BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##AY830839|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC018692|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_015183|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_001164664|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_198828|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC033215|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	0.978657	0.0	denovo_WM_7:-14:0.309	denovo_WM_7:-15:0.309	denovo_WM_7:-16:0.309
chr1	145715647	145715786	reg1008840.p1	5.714	+	AF060981 BC014465 NM_007053 AK128370	-129	-	AL079314 TSC_hg19_v1_chr1_+_145663283	-52497	+	TSC_hg19_v1_chr1_+_145611124 AF419857 NM_014455 AK290749 AF542552 BC054049 BC064903 CU691082 EU446627 EU446791 GQ129333 GQ129334	-104536	+	NM_001201325 NM_001201326 NM_002614 TSC_hg19_v1_chr1_+_145727703	11968	+	TSC_hg19_v1_chr1_+_145727712 AK313100 AK298269 BC006496 BC006518 AF012281	12003	+	BT006679 DQ890650 DQ893830 AB528816 TSC_hg19_v1_chr1_-_145827047 BC003187 AK316371 BC146880 AF132947 U78723 BC067816 AB097024 AB097025 AK223223 AK299995 AK302266 AY358966 AK021758 AK297145 NM_001097612 NM_001097613	111300	-	AF060981|CD160|11126|CD160 molecule##BC014465|CD160|11126|CD160 molecule##NM_007053|CD160|11126|CD160 molecule##AK128370|CD160|11126|CD160 molecule##AL079314|RNF115|27246|ring finger protein 115##AF419857|RNF115|27246|ring finger protein 115##NM_014455|RNF115|27246|ring finger protein 115##AK290749|RNF115|27246|ring finger protein 115##AF542552|RNF115|27246|ring finger protein 115##BC054049|RNF115|27246|ring finger protein 115##BC064903|RNF115|27246|ring finger protein 115##EU446627|RNF115|27246|ring finger protein 115##EU446791|RNF115|27246|ring finger protein 115##GQ129333|RNF115|27246|ring finger protein 115##GQ129334|RNF115|27246|ring finger protein 115##NM_001201325|PDZK1|5174|PDZ domain containing 1##NM_001201326|PDZK1|5174|PDZ domain containing 1##NM_002614|PDZK1|5174|PDZ domain containing 1##AK313100|PDZK1|5174|PDZ domain containing 1##AK298269|PDZK1|5174|PDZ domain containing 1##BC006496|PDZK1|5174|PDZ domain containing 1##BC006518|PDZK1|5174|PDZ domain containing 1##AF012281|PDZK1|5174|PDZ domain containing 1##BT006679|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##AK297145|GPR89A|653519|G protein-coupled receptor 89A##NM_001097612|GPR89A|653519|G protein-coupled receptor 89A##NM_001097613|GPR89A|653519|G protein-coupled receptor 89A	0.0	0.0	
chr12	16758808	16758988	reg1005680.p1	5.714	+	AK316021 AK294474 NM_001243612	-27	-	NM_001243611 TSC_hg19_v1_chr12_-_16758338	-573	-	TSC_hg19_v1_chr12_-_16757958 AK294651 AB044745	-886	-	AK312418 TSC_hg19_v1_chr12_-_16759422	524	-	BC026311 TSC_hg19_v1_chr12_-_16759432	533	-	TSC_hg19_v1_chr12_-_16759535 NM_018640	635	-	AK316021|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK294474|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001243612|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001243611|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AB044745|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK312418|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##BC026311|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_018640|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	0.0	0.0	
chr19	47327736	47327880	reg1006983.p1	5.714	+	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-36086	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-36535	-	AK293433 AK301661 NM_001145144	-37266	-	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	26323	-	AB051509 AF159851 BC131565 BC150257 NM_004491	94124	+	TSC_hg19_v1_chr19_+_47523068 BC039016	195268	+	AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK293433|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK301661|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145144|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1	0.739353	0.0	denovo_WM_7:76:0.456
chr7	150053632	150053776	reg1007280.p2	5.714	+	TSC_hg19_v1_chr7_-_150038719 BC000069 L07329 U77594 AB015632 AK092804 AK312197 NM_002889	-14953	-	AL832660 NM_138434	-26797	+	BX640643 NM_001164458	-32995	-	TSC_hg19_v1_chr7_+_150065333 AK292670	11641	+	TSC_hg19_v1_chr7_+_150065881 NM_001099695 NM_001099696 NM_013400	12166	+	TSC_hg19_v1_chr7_+_150065968 AK225227 AK025356	12288	+	BC000069|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##U77594|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AB015632|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AK092804|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AK312197|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##NM_002889|RARRES2|5919|retinoic acid receptor responder (tazarotene induced) 2##AL832660|C7orf29|113763|chromosome 7 open reading frame 29##NM_138434|C7orf29|113763|chromosome 7 open reading frame 29##BX640643|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164458|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##AK292670|REPIN1|29803|replication initiator 1##NM_001099695|REPIN1|29803|replication initiator 1##NM_001099696|REPIN1|29803|replication initiator 1##NM_013400|REPIN1|29803|replication initiator 1##AK225227|REPIN1|29803|replication initiator 1##AK025356|REPIN1|29803|replication initiator 1	0.952173	0.619303	CTCF.p2:-11:0.619	denovo_WM_7:-50:0.657
chr16	1470814	1470994	reg1000502.p1	5.713	+	TSC_hg19_v1_chr16_-_1470746 BC073941 BC063715 BC023590 BC092497	-169	-	TSC_hg19_v1_chr16_-_1464697 AM944365 BC011924 AK124977 NM_001037125 NM_001193388	-6226	-	TSC_hg19_v1_chr16_-_1429645 BC000150 AK027013 NM_001193389 NM_023076	-41239	-	NM_001010878 AB463766	8440	-	NM_001143980	23585	-	CU680387 TSC_hg19_v1_chr16_+_1496635	25729	+	BC023590|C16orf91|283951|chromosome 16 open reading frame 91##BC092497|C16orf91|283951|chromosome 16 open reading frame 91##AM944365|UNKL|64718|unkempt homolog (Drosophila)-like##BC011924|UNKL|64718|unkempt homolog (Drosophila)-like##AK124977|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001037125|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001193388|UNKL|64718|unkempt homolog (Drosophila)-like##BC000150|UNKL|64718|unkempt homolog (Drosophila)-like##AK027013|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001193389|UNKL|64718|unkempt homolog (Drosophila)-like##NM_023076|UNKL|64718|unkempt homolog (Drosophila)-like##NM_001010878|C16orf91|283951|chromosome 16 open reading frame 91##NM_001143980|CCDC154|645811|coiled-coil domain containing 154	0.0	0.0	
chr17	47418856	47418981	reg1004970.p2	5.713	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-110775	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-130841	+	NM_001198754	-130983	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	20662	-	BC095460 TSC_hg19_v1_chr17_-_47492215	73297	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	73330	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	0.997252	0.0	
chrX	41987368	41987505	reg1006077.p1	5.713	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	-205111	-	BC070180 NM_080817 AK122626 AK313702 AL832460	-404016	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-439169	+	BC044787 TSC_hg19_v1_chrX_+_43514289	1526787	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	1527978	+	TSC_hg19_v1_chrX_+_43515457 M68840	1528044	+	AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A##M68840|MAOA|4128|monoamine oxidase A	0.982955	0.0	denovo_WM_7:37:0.983
chr1	54852185	54852354	reg1007661.p1	5.711	+	TSC_hg19_v1_chr1_+_54665866 AF151069 AF325707 AY421759 BC000041 CU674006	-186379	+	TSC_hg19_v1_chr1_+_54665855 AK026171	-186416	+	AK024572 NM_016491 TSC_hg19_v1_chr1_+_54665839	-186427	+	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	19519	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	19753	-	TSC_hg19_v1_chr1_-_54872087 NM_001009955	19815	-	AF151069|MRPL37|51253|mitochondrial ribosomal protein L37##AF325707|MRPL37|51253|mitochondrial ribosomal protein L37##AY421759|MRPL37|51253|mitochondrial ribosomal protein L37##BC000041|MRPL37|51253|mitochondrial ribosomal protein L37##AK026171|MRPL37|51253|mitochondrial ribosomal protein L37##AK024572|MRPL37|51253|mitochondrial ribosomal protein L37##NM_016491|MRPL37|51253|mitochondrial ribosomal protein L37##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##NM_001009955|SSBP3|23648|single stranded DNA binding protein 3	0.999843	0.0	
chr17_ctg5_hap1	1370574	1370679	reg1007462.p1	5.711	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr2	224761636	224761751	reg1007816.p2	5.711	+	TSC_hg19_v1_chr2_-_224702300 BC009606 NM_001039569	-59383	-	AF393369 BC021898 TSC_hg19_v1_chr2_-_224702284 AK025338 AK299026	-59444	-	TSC_hg19_v1_chr2_-_224467145 NM_003469	-294514	-	TSC_hg19_v1_chr2_-_224810010 AF411977 AB527455 CU691898	48300	-	BC040525 AB037856 TSC_hg19_v1_chr2_-_224810016	48322	-	TSC_hg19_v1_chr2_-_224810020 AK023415 AK022888	48331	-	BC009606|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_001039569|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AF393369|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC021898|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK025338|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK299026|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_003469|SCG2|7857|secretogranin II##AF411977|WDFY1|57590|WD repeat and FYVE domain containing 1##BC040525|WDFY1|57590|WD repeat and FYVE domain containing 1##AB037856|WDFY1|57590|WD repeat and FYVE domain containing 1##AK023415|WDFY1|57590|WD repeat and FYVE domain containing 1##AK022888|WDFY1|57590|WD repeat and FYVE domain containing 1	0.0	0.0	
chr5	31382870	31383050	reg1008563.p2	5.711	+	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	-189083	+	NM_004932 TSC_hg19_v1_chr5_+_31193792 AK291290	-189164	+	TSC_hg19_v1_chr5_+_27472410 BC039509 BC046201 BC101438 BC101441 BC101982 BC122523	-3910557	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	149262	-	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	149475	+	TSC_hg19_v1_chr5_+_31639424 AB002298	256510	+	BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##NM_004932|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK291290|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##BC039509|LOC643401|643401|uncharacterized LOC643401##BC046201|LOC643401|643401|uncharacterized LOC643401##BC101438|LOC643401|643401|uncharacterized LOC643401##BC101982|LOC643401|643401|uncharacterized LOC643401##BC122523|LOC643401|643401|uncharacterized LOC643401##AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III##NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AB002298|PDZD2|23037|PDZ domain containing 2	1.177783	0.0	denovo_WM_7:36:0.689
chr3	136465962	136466142	reg1007583.p1	5.710	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	-496850	+	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	-496888	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	-551371	-	TSC_hg19_v1_chr3_-_136471221 BC040708 AB210023 AK309934 BC064699 CR749247 NM_005862	5163	-	BC050423 NM_001097599 NM_001097600 NM_025246 TSC_hg19_v1_chr3_+_136537897 BC022557 AK314079 BC000111 AL136661	71867	+	TSC_hg19_v1_chr3_+_136581071 NM_006153 BC006403	114988	+	S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##BC040708|STAG1|10274|stromal antigen 1##AB210023|STAG1|10274|stromal antigen 1##AK309934|STAG1|10274|stromal antigen 1##BC064699|STAG1|10274|stromal antigen 1##CR749247|STAG1|10274|stromal antigen 1##NM_005862|STAG1|10274|stromal antigen 1##BC050423|TMEM22|80723|transmembrane protein 22##NM_001097599|TMEM22|80723|transmembrane protein 22##NM_001097600|TMEM22|80723|transmembrane protein 22##NM_025246|TMEM22|80723|transmembrane protein 22##BC022557|TMEM22|80723|transmembrane protein 22##AK314079|TMEM22|80723|transmembrane protein 22##BC000111|TMEM22|80723|transmembrane protein 22##AL136661|TMEM22|80723|transmembrane protein 22##NM_006153|NCK1|4690|NCK adaptor protein 1##BC006403|NCK1|4690|NCK adaptor protein 1	2.013683	0.0	denovo_WM_7:69:0.449	denovo_WM_7:70:0.449	denovo_WM_7:-93:0.845
chr9	107537396	107537576	reg1006612.p1	5.710	+	AK002137 BC017914 BX647652 NM_018376 AK310397 BC005202	-11034	+	TSC_hg19_v1_chr9_+_107509977 BC005935 NM_015469 AK301410 AF161417 AK024015 AL117557 BC045830 CU675195	-27476	+	BC140916 AB587601 NM_001004484	-80806	+	AB055982 AB445477 TSC_hg19_v1_chr9_-_107665989	128511	-	AB037924 TSC_hg19_v1_chr9_-_107666055	128565	-	BC146856 TSC_hg19_v1_chr9_-_107690419 AF285167 BC034824 BC141816 BC142693 AK022254	152898	-	AK002137|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC017914|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BX647652|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##NM_018376|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##AK310397|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC005202|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC005935|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##NM_015469|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK301410|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AF161417|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK024015|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AL117557|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##BC045830|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##BC140916|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##NM_001004484|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##AB055982|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AB445477|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AB037924|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##BC146856|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AF285167|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##BC034824|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1	0.987108	0.0	denovo_WM_7:-3:0.927
chr20	60696489	60696638	reg1009603.p1	5.709	+	U75308 NM_003185 Y11354 TSC_hg19_v1_chr20_-_60640882	-55684	-	NM_001252339 AK124724	-521739	+	AK308345 NM_001252338	-622087	+	TSC_hg19_v1_chr20_+_60697530 BC057387 NM_144703 BC035702	951	+	TSC_hg19_v1_chr20_+_60697578 CU691202	1081	+	BT007165 AB528335 DQ890589 DQ893754 AF022815 TSC_hg19_v1_chr20_-_60718388	21811	-	U75308|TAF4|6874|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa##NM_003185|TAF4|6874|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa##Y11354|TAF4|6874|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa##NM_001252339|CDH4|1002|cadherin 4, type 1, R-cadherin (retinal)##AK124724|CDH4|1002|cadherin 4, type 1, R-cadherin (retinal)##AK308345|CDH4|1002|cadherin 4, type 1, R-cadherin (retinal)##NM_001252338|CDH4|1002|cadherin 4, type 1, R-cadherin (retinal)##BC057387|LSM14B|149986|LSM14B, SCD6 homolog B (S. cerevisiae)##NM_144703|LSM14B|149986|LSM14B, SCD6 homolog B (S. cerevisiae)##BC035702|LSM14B|149986|LSM14B, SCD6 homolog B (S. cerevisiae)##BT007165|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##DQ890589|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##DQ893754|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##AF022815|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7	0.0	0.0	
chr2	101070383	101070563	reg1004576.p1	5.709	+	TSC_hg19_v1_chr2_-_101034114 BC010441 AF033827 NM_004854	-36376	-	DQ020495 NM_198461	-131279	-	BC036895 TSC_hg19_v1_chr2_-_100759026 NM_002285	-311470	-	AB164464 NM_001011717	16470	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	108963	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	366293	+	BC010441|CHST10|9486|carbohydrate sulfotransferase 10##AF033827|CHST10|9486|carbohydrate sulfotransferase 10##NM_004854|CHST10|9486|carbohydrate sulfotransferase 10##DQ020495|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##NM_198461|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##BC036895|AFF3|3899|AF4/FMR2 family, member 3##NM_002285|AFF3|3899|AF4/FMR2 family, member 3##AB164464|NMS|129521|neuromedin S##NM_001011717|NMS|129521|neuromedin S##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2	0.03215	0.0	
chr22	45714133	45714273	reg1008118.p1	5.709	+	TSC_hg19_v1_chr22_+_45705966 BC013696	-8207	+	TSC_hg19_v1_chr22_+_45705838 NM_017911 AK000642	-8389	+	TSC_hg19_v1_chr22_+_45704858 AK125027 NM_001104595	-9253	+	TSC_hg19_v1_chr22_-_45809502 BC126208 AJ504806 NM_148674	95281	-	TSC_hg19_v1_chr22_+_45809579 AK098586 NM_015653 AK225722	95366	+	TSC_hg19_v1_chr22_+_45809599 BC003024 BC009904 AL442116	95425	+	BC013696|FAM118A|55007|family with sequence similarity 118, member A##NM_017911|FAM118A|55007|family with sequence similarity 118, member A##AK000642|FAM118A|55007|family with sequence similarity 118, member A##AK125027|FAM118A|55007|family with sequence similarity 118, member A##NM_001104595|FAM118A|55007|family with sequence similarity 118, member A##BC126208|SMC1B|27127|structural maintenance of chromosomes 1B##AJ504806|SMC1B|27127|structural maintenance of chromosomes 1B##NM_148674|SMC1B|27127|structural maintenance of chromosomes 1B##AK098586|RIBC2|26150|RIB43A domain with coiled-coils 2##NM_015653|RIBC2|26150|RIB43A domain with coiled-coils 2##AK225722|RIBC2|26150|RIB43A domain with coiled-coils 2##BC003024|RIBC2|26150|RIB43A domain with coiled-coils 2##BC009904|RIBC2|26150|RIB43A domain with coiled-coils 2##AL442116|RIBC2|26150|RIB43A domain with coiled-coils 2	0.070073	0.0	
chr6	2761644	2761796	reg1008155.p2	5.709	+	BX647582 NM_001012418 AK096893	-10544	-	NM_152554	-126423	-	TSC_hg19_v1_chr6_+_2245995 AK023629	-515707	+	TSC_hg19_v1_chr6_+_2765561 AK315047	3860	+	TSC_hg19_v1_chr6_+_2765645 AB056152 NM_020135 NM_130395	3919	+	TSC_hg19_v1_chr6_+_2765755 AK315471 BC018923 AK094823 AK223593 DQ891950 DQ895136 AB209723	4146	+	BX647582|MYLK4|340156|myosin light chain kinase family, member 4##NM_001012418|MYLK4|340156|myosin light chain kinase family, member 4##AK096893|MYLK4|340156|myosin light chain kinase family, member 4##NM_152554|C6orf195|154386|chromosome 6 open reading frame 195##AK315047|WRNIP1|56897|Werner helicase interacting protein 1##AB056152|WRNIP1|56897|Werner helicase interacting protein 1##NM_020135|WRNIP1|56897|Werner helicase interacting protein 1##NM_130395|WRNIP1|56897|Werner helicase interacting protein 1##AK315471|WRNIP1|56897|Werner helicase interacting protein 1##BC018923|WRNIP1|56897|Werner helicase interacting protein 1##AK094823|WRNIP1|56897|Werner helicase interacting protein 1##AK223593|WRNIP1|56897|Werner helicase interacting protein 1##DQ891950|WRNIP1|56897|Werner helicase interacting protein 1##DQ895136|WRNIP1|56897|Werner helicase interacting protein 1##AB209723|WRNIP1|56897|Werner helicase interacting protein 1	0.015112	0.636484	CTCF.p2:-8:0.636
chr1	29186881	29187010	reg1007529.p1	5.708	+	NM_000911 U07882	-48292	+	TSC_hg19_v1_chr1_+_29063503 AK303833 NM_001172828 AF432214 AF155095 AF192968 DQ892157 DQ895352 CU678040 AB451335 AB451484	-123408	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	-123662	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	26646	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	26712	+	TSC_hg19_v1_chr1_+_29241080 NM_001166006 BC039079 AK310655	54136	+	NM_000911|OPRD1|4985|opioid receptor, delta 1##U07882|OPRD1|4985|opioid receptor, delta 1##AK303833|YTHDF2|51441|YTH domain family, member 2##NM_001172828|YTHDF2|51441|YTH domain family, member 2##AF432214|YTHDF2|51441|YTH domain family, member 2##AF155095|YTHDF2|51441|YTH domain family, member 2##AF192968|YTHDF2|51441|YTH domain family, member 2##DQ892157|YTHDF2|51441|YTH domain family, member 2##DQ895352|YTHDF2|51441|YTH domain family, member 2##AB451335|YTHDF2|51441|YTH domain family, member 2##AB451484|YTHDF2|51441|YTH domain family, member 2##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166006|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##BC039079|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##AK310655|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.993049	0.0	denovo_WM_7:-60:0.314	denovo_WM_7:-61:0.314	denovo_WM_7:-62:0.314
chr18	55899259	55899379	reg1008948.p1	5.708	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-10469	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-10516	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-10557	+	BX647796 NM_052947	396869	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	439322	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	439409	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.0	0.154762	
chr22	23768263	23768411	reg1007137.p1	5.708	+	TSC_hg19_v1_chr22_-_23744738 AK056130 AK092581 AX747609 AK092530 AX747585	-23594	-	TSC_hg19_v1_chr22_+_23540316 X14677 X14675	-227932	+	TSC_hg19_v1_chr22_+_23523013 X06418 EU216058 EU216059 EU216061 EU216062 EU216063 EU216064 EU216065 EU216067 EU216068 EU216069 EU216070 EU216072	-245288	+	AB528384 DQ893578 DQ894640 BC030239 BC012293 M27749 NM_020070 NM_152855	154098	-	BC056888 AL080197 BC063390 AK310349 NM_016449	206159	-	AY101396 NM_153615	264710	+	AK056130|ZDHHC8P1|150244|zinc finger, DHHC-type containing 8 pseudogene 1##AK092581|ZDHHC8P1|150244|zinc finger, DHHC-type containing 8 pseudogene 1##AK092530|ZDHHC8P1|150244|zinc finger, DHHC-type containing 8 pseudogene 1##X06418|BCR|613|breakpoint cluster region##EU216058|BCR|613|breakpoint cluster region##EU216059|BCR|613|breakpoint cluster region##EU216061|BCR|613|breakpoint cluster region##EU216062|BCR|613|breakpoint cluster region##EU216063|BCR|613|breakpoint cluster region##EU216064|BCR|613|breakpoint cluster region##EU216067|BCR|613|breakpoint cluster region##EU216069|BCR|613|breakpoint cluster region##EU216070|BCR|613|breakpoint cluster region##DQ893578|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##DQ894640|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##BC030239|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##BC012293|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##M27749|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##NM_020070|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##NM_152855|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##BC056888|C22orf43|51233|chromosome 22 open reading frame 43##AL080197|C22orf43|51233|chromosome 22 open reading frame 43##BC063390|C22orf43|51233|chromosome 22 open reading frame 43##AK310349|C22orf43|51233|chromosome 22 open reading frame 43##NM_016449|C22orf43|51233|chromosome 22 open reading frame 43##AY101396|RGL4|266747|ral guanine nucleotide dissociation stimulator-like 4##NM_153615|RGL4|266747|ral guanine nucleotide dissociation stimulator-like 4	0.999109	0.0	denovo_WM_7:74:0.310	denovo_WM_7:75:0.310	denovo_WM_7:76:0.310
chr6	76323307	76323431	reg1006179.p2	5.708	+	AF307849 AB018340 TSC_hg19_v1_chr6_+_76312226 AF306508 AF196304	-11161	+	TSC_hg19_v1_chr6_+_76311780 BC028583	-11487	+	TSC_hg19_v1_chr6_+_76311642 AK096455	-11733	+	TSC_hg19_v1_chr6_+_76458926 NM_004999 BX647397 BC012598	135547	+	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	135640	+	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	458930	-	AF307849|SENP6|26054|SUMO1/sentrin specific peptidase 6##AB018340|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF306508|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF196304|SENP6|26054|SUMO1/sentrin specific peptidase 6##BC028583|SENP6|26054|SUMO1/sentrin specific peptidase 6##AK096455|SENP6|26054|SUMO1/sentrin specific peptidase 6##NM_004999|MYO6|4646|myosin VI##BX647397|MYO6|4646|myosin VI##BC012598|MYO6|4646|myosin VI##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1	0.999409	0.0	denovo_WM_7:13:0.884
chr7	55501014	55501113	reg1007879.p1	5.708	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	-67491	+	AK095857 NM_018697	-67923	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-414117	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	138977	-	TSC_hg19_v1_chr7_-_55640073 AB097004	139019	-	BC016650 AK314338 TSC_hg19_v1_chr7_-_55640107	139042	-	AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AB097004|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##BC016650|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK314338|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.0	0.232156	CTCF.p2:11:0.232
chr9	132694610	132694742	reg1008575.p1	5.708	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-96911	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-96954	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-96992	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	110678	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	110812	-	BC039728 NM_001136557 NM_001136558 NM_020960	121308	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.24614	0.0	
chr10	89510701	89510826	reg1008682.p1	5.707	+	TSC_hg19_v1_chr10_+_89419623 NM_001015880 NM_004670 BC009894 AK312556 AF091242 AF150754 AF074331 AF173365 DQ893625 DQ895430 AF313907	-91218	+	AK309176 NM_001178118	-243174	+	NM_001178117 NM_004897 TSC_hg19_v1_chr10_+_89264649 AK304624 AK312937 AL050356 AF084943 AB209819 AF084944 AY358938 BC032504 AF046914 CU689404	-246288	+	TSC_hg19_v1_chr10_-_89577921 AK075223 NM_032810	67139	-	EU552092 NM_001126049	112430	-	TSC_hg19_v1_chr10_+_89623357 NM_000314 U92436	112463	+	NM_001015880|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##NM_004670|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##BC009894|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AK312556|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF091242|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF150754|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF074331|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF173365|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##DQ893625|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##DQ895430|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AF313907|PAPSS2|9060|3'-phosphoadenosine 5'-phosphosulfate synthase 2##AK309176|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##NM_001178118|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##NM_001178117|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##NM_004897|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AK304624|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AK312937|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AL050356|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AF084943|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AB209819|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AF084944|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AY358938|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##BC032504|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AF046914|MINPP1|9562|multiple inositol-polyphosphate phosphatase 1##AK075223|ATAD1|84896|ATPase family, AAA domain containing 1##NM_032810|ATAD1|84896|ATPase family, AAA domain containing 1##EU552092|KLLN|100144748|killin, p53-regulated DNA replication inhibitor##NM_001126049|KLLN|100144748|killin, p53-regulated DNA replication inhibitor##NM_000314|PTEN|5728|phosphatase and tensin homolog##U92436|PTEN|5728|phosphatase and tensin homolog	0.99568	0.0	denovo_WM_7:24:0.249	denovo_WM_7:25:0.249	denovo_WM_7:26:0.249	denovo_WM_7:27:0.249
chr12	108278946	108279104	reg1007143.p1	5.706	+	AY238895 NM_203436	-110864	+	TSC_hg19_v1_chr12_-_108154938 BC068562	-124024	-	TSC_hg19_v1_chr12_-_108154913 NM_012406	-124115	-	BC110330 AB018332 NM_014653	244462	+	NM_001142345	435413	-	U79526 U79527 AK291800 NM_001142343 NM_001142344 NM_004072	454059	-	AY238895|ASCL4|121549|achaete-scute complex homolog 4 (Drosophila)##NM_203436|ASCL4|121549|achaete-scute complex homolog 4 (Drosophila)##BC068562|PRDM4|11108|PR domain containing 4##NM_012406|PRDM4|11108|PR domain containing 4##BC110330|WSCD2|9671|WSC domain containing 2##AB018332|WSCD2|9671|WSC domain containing 2##NM_014653|WSCD2|9671|WSC domain containing 2##NM_001142345|CMKLR1|1240|chemokine-like receptor 1##U79526|CMKLR1|1240|chemokine-like receptor 1##U79527|CMKLR1|1240|chemokine-like receptor 1##AK291800|CMKLR1|1240|chemokine-like receptor 1##NM_001142343|CMKLR1|1240|chemokine-like receptor 1##NM_001142344|CMKLR1|1240|chemokine-like receptor 1##NM_004072|CMKLR1|1240|chemokine-like receptor 1	0.0	0.962804	CTCF.p2:23:0.963
chr14	50063179	50063359	reg1000231.p1	5.706	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-10176	-	AK309211 NM_001113498	-1919113	-	BC028193 NM_182830	-2250854	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	2191	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	24075	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	24438	+	BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC028193|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_182830|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	0.0	0.0	
chr5	138926864	138927005	reg1004563.p1	5.706	+	NM_198282 TSC_hg19_v1_chr5_-_138862344	-64591	-	TSC_hg19_v1_chr5_-_138862306 AK095896 AX775913 BC047779 AK290661	-64662	-	AK304726 BC146912 BC146913 DQ462572 NM_001077693 EU025066 TSC_hg19_v1_chr5_-_138842329	-84624	-	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	13839	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	13991	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	14414	+	NM_198282|TMEM173|340061|transmembrane protein 173##AK095896|TMEM173|340061|transmembrane protein 173##AX775913|TMEM173|340061|transmembrane protein 173##BC047779|TMEM173|340061|transmembrane protein 173##AK290661|TMEM173|340061|transmembrane protein 173##BC146912|ECSCR|641700|endothelial cell-specific chemotaxis regulator##BC146913|ECSCR|641700|endothelial cell-specific chemotaxis regulator##DQ462572|ECSCR|641700|endothelial cell-specific chemotaxis regulator##NM_001077693|ECSCR|641700|endothelial cell-specific chemotaxis regulator##EU025066|ECSCR|641700|endothelial cell-specific chemotaxis regulator##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2	0.0	0.0	
chr8	37756350	37756439	reg1008770.p1	5.705	+	TSC_hg19_v1_chr8_-_37727937 AK026177	-28444	-	NM_018310 TSC_hg19_v1_chr8_-_37707430 AK294337	-48950	-	TSC_hg19_v1_chr8_-_37707395 AK315420 BC010648 AK001914 AF206673	-49008	-	AY280968 DQ083995 AF368294 DQ236342 BC077720 BC054881 TSC_hg19_v1_chr8_-_37757016 AK291781 AK026275 NM_001002814 NM_025151	607	-	BC029504 NM_152413	41252	-	S53291 TSC_hg19_v1_chr8_-_37822825	66425	-	AK026177|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_018310|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK294337|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK315420|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##BC010648|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK001914|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AF206673|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AY280968|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ083995|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AF368294|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ236342|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC077720|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC054881|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK291781|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK026275|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_001002814|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_025151|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC029504|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##NM_152413|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##S53291|ADRB3|155|adrenergic, beta-3-, receptor	0.999914	0.0	
chr9	126590900	126591018	reg1008297.p2	5.705	+	NM_173689 AK123000 DQ426866 AY720432	-472466	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-560071	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-560139	-	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	101352	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	182924	+	TSC_hg19_v1_chr9_+_126774046 BC034458	183112	+	NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC034458|LHX2|9355|LIM homeobox 2	0.991618	0.0	denovo_WM_7:-30:0.738
chr10	69524243	69524392	reg1007423.p1	5.703	+	AF091606 AK313882 NM_013266	-68380	-	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	-98921	-	NM_178011 BX640611 AY358315 BC111492	-838502	+	CR457184 AF176013 BC017018 AK289537 AF176012 NM_021800 NM_201262	73535	-	TSC_hg19_v1_chr10_+_69644413 AF083106 NM_012238 AF235040	120090	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	120475	+	AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##CR457184|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176013|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##BC017018|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AK289537|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176012|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_021800|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_201262|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF083106|SIRT1|23411|sirtuin 1##NM_012238|SIRT1|23411|sirtuin 1##AF235040|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1	0.932642	0.0	denovo_WM_7:50:0.895
chr1	109102467	109102594	reg1007744.p2	5.703	+	NM_001143987 NM_001143988 BC125161 BC125162	-109608	+	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	-315848	-	TSC_hg19_v1_chr1_+_108742987 AK130480	-359521	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	512	+	BC088366 TSC_hg19_v1_chr1_-_109203698 NM_001102592 BC012198	101238	-	TSC_hg19_v1_chr1_-_109204071 AK311542 AK310152 AK055087 NM_144584	101561	-	NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B##BC088366|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_001102592|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##BC012198|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK311542|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK310152|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK055087|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_144584|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)	0.0	0.0	
chr15	64944089	64944237	reg1008178.p2	5.703	+	AB056456 TSC_hg19_v1_chr15_+_64885153	-59010	+	NM_015042	-152545	+	TSC_hg19_v1_chr15_+_64752786 BC142647	-191304	+	BC119629 BC119630 BC148316 BC127630 TSC_hg19_v1_chr15_-_64995360 BC127631 AF242520 AF242521	51197	-	TSC_hg19_v1_chr15_-_64995415 AF057297 BC063577 BC073877 BC035493 BC092483	51239	-	TSC_hg19_v1_chr15_-_64995461 BC047755 NM_002537	51306	-	NM_015042|ZNF609|23060|zinc finger protein 609##BC142647|ZNF609|23060|zinc finger protein 609##BC119629|OAZ2|4947|ornithine decarboxylase antizyme 2##BC119630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC148316|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127631|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242520|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242521|OAZ2|4947|ornithine decarboxylase antizyme 2##AF057297|OAZ2|4947|ornithine decarboxylase antizyme 2##BC063577|OAZ2|4947|ornithine decarboxylase antizyme 2##BC073877|OAZ2|4947|ornithine decarboxylase antizyme 2##BC035493|OAZ2|4947|ornithine decarboxylase antizyme 2##BC092483|OAZ2|4947|ornithine decarboxylase antizyme 2##BC047755|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_002537|OAZ2|4947|ornithine decarboxylase antizyme 2	1.064709	0.0	denovo_WM_7:27:0.743
chr17	46962149	46962254	reg1008602.p2	5.703	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-53811	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-67777	-	CU689652 BC033563 NM_173623 AK310321	-90556	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	7984	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	23544	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	23633	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	1.973987	0.97002	CTCF.p2:10:0.970	denovo_WM_7:-47:0.872	denovo_WM_7:-63:0.919
chr2	208858157	208858326	reg1008974.p2	5.702	+	U43318 AB043702 NM_003468	-224145	-	TSC_hg19_v1_chr2_+_208576466 BC067253	-281741	+	TSC_hg19_v1_chr2_+_208576365 BC047293	-281846	+	TSC_hg19_v1_chr2_-_208890252 BX648983 NM_001080475	32023	-	HQ258094 U66583 BC117338 BC117340 NM_006891	130955	-	AB590655 U66582 BC074954 BC074955 NM_020989	136239	-	U43318|FZD5|7855|frizzled family receptor 5##AB043702|FZD5|7855|frizzled family receptor 5##NM_003468|FZD5|7855|frizzled family receptor 5##BC067253|CCNYL1|151195|cyclin Y-like 1##BC047293|CCNYL1|151195|cyclin Y-like 1##BX648983|PLEKHM3|389072|pleckstrin homology domain containing, family M, member 3##NM_001080475|PLEKHM3|389072|pleckstrin homology domain containing, family M, member 3##HQ258094|CRYGD|1421|crystallin, gamma D##U66583|CRYGD|1421|crystallin, gamma D##BC117338|CRYGD|1421|crystallin, gamma D##BC117340|CRYGD|1421|crystallin, gamma D##NM_006891|CRYGD|1421|crystallin, gamma D##U66582|CRYGC|1420|crystallin, gamma C##BC074954|CRYGC|1420|crystallin, gamma C##BC074955|CRYGC|1420|crystallin, gamma C##NM_020989|CRYGC|1420|crystallin, gamma C	0.999406	0.0	denovo_WM_7:-7:0.739
chr5	156569717	156569863	reg1008639.p1	5.702	+	TSC_hg19_v1_chr5_-_156536188 NM_032782	-33574	-	AK027334 TSC_hg19_v1_chr5_-_156536052 AF450242 AF450243 AK314406 BC020843 AF251707 BC063431	-33687	-	AY069944 CU687712 TSC_hg19_v1_chr5_-_156536016	-33779	-	NM_001100816 TSC_hg19_v1_chr5_-_156569881 AK123613 AF031383 BC005250 BC006968 AK308393 NM_004270	62	-	AY973323 CU692472 AF465821 BC025397 AK057543 BC022035 BC025409 BC025998 NM_130899	23438	-	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	38127	+	NM_032782|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK027334|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450242|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450243|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK314406|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC020843|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF251707|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC063431|HAVCR2|84868|hepatitis A virus cellular receptor 2##AY069944|HAVCR2|84868|hepatitis A virus cellular receptor 2##NM_001100816|MED7|9443|mediator complex subunit 7##AF031383|MED7|9443|mediator complex subunit 7##BC005250|MED7|9443|mediator complex subunit 7##BC006968|MED7|9443|mediator complex subunit 7##AK308393|MED7|9443|mediator complex subunit 7##NM_004270|MED7|9443|mediator complex subunit 7##AY973323|FAM71B|153745|family with sequence similarity 71, member B##AF465821|FAM71B|153745|family with sequence similarity 71, member B##BC025397|FAM71B|153745|family with sequence similarity 71, member B##AK057543|FAM71B|153745|family with sequence similarity 71, member B##BC022035|FAM71B|153745|family with sequence similarity 71, member B##BC025409|FAM71B|153745|family with sequence similarity 71, member B##BC025998|FAM71B|153745|family with sequence similarity 71, member B##NM_130899|FAM71B|153745|family with sequence similarity 71, member B##AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase	0.0	0.0	
chr10	77372788	77372946	reg1007681.p2	5.701	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-211302	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-211386	-	TSC_hg19_v1_chr10_-_77161142 CU680472 EU446545 BC013011 BC021165	-211657	-	AF267860 NM_032024	169651	+	AF118141 TSC_hg19_v1_chr10_-_79397246	2024358	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	2024469	-	AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##EU446545|ZNF503|84858|zinc finger protein 503##BC013011|ZNF503|84858|zinc finger protein 503##BC021165|ZNF503|84858|zinc finger protein 503##AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	0.993828	0.0	denovo_WM_7:15:0.813
chr18	3541863	3542009	reg1007974.p1	5.701	+	NM_173211	-88165	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-90305	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-91856	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	52206	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	303394	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	332348	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.775991	0.0	denovo_WM_7:-26:0.625
chr3	124933682	124933825	reg1007859.p1	5.701	+	AK123001 TSC_hg19_v1_chr3_-_124931591 AX721165 AK131070 NM_024628	-2168	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	-3536	-	BC063528 TSC_hg19_v1_chr3_-_124842461	-91298	-	AF039019 AL833616 AF432210 AJ236885 L04282 BC035591 BC018971 AK314203 TSC_hg19_v1_chr3_-_125094153 BC050260 NM_021964	160347	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	305278	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	305300	-	AK123001|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_024628|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC063528|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF039019|ZNF148|7707|zinc finger protein 148##AL833616|ZNF148|7707|zinc finger protein 148##AF432210|ZNF148|7707|zinc finger protein 148##AJ236885|ZNF148|7707|zinc finger protein 148##L04282|ZNF148|7707|zinc finger protein 148##BC035591|ZNF148|7707|zinc finger protein 148##BC018971|ZNF148|7707|zinc finger protein 148##AK314203|ZNF148|7707|zinc finger protein 148##BC050260|ZNF148|7707|zinc finger protein 148##NM_021964|ZNF148|7707|zinc finger protein 148##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##NM_003794|SNX4|8723|sorting nexin 4	0.998629	0.0	denovo_WM_7:-5:0.449	denovo_WM_7:-6:0.449
chr8	110552615	110552762	reg1007849.p2	5.701	+	NM_004215 BC005249 BC022506 AK308950 AB007619 AF006265 AY515724	-278	+	TSC_hg19_v1_chr8_+_110551942 NM_198120 AK290651 BC017729	-703	+	AY219181 NM_177531 BC093096 AK128617	-177959	+	AK297182 TSC_hg19_v1_chr8_-_110620232	67538	-	NM_001099756	102730	-	AY705385 AB384607 TSC_hg19_v1_chr8_-_110656972	104241	-	NM_004215|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC005249|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC022506|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK308950|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AB007619|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AF006265|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY515724|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##NM_198120|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK290651|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC017729|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY219181|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_177531|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##BC093096|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##AK297182|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099756|SYBU|55638|syntabulin (syntaxin-interacting)##AY705385|SYBU|55638|syntabulin (syntaxin-interacting)	0.0	0.0	
chr12	10874617	10874766	reg1008051.p1	5.699	+	AF251059 NM_018423	-47801	-	AB528590 TSC_hg19_v1_chr12_-_10766200 BC010905 AK022720 AK001154 BC000928 AK096106 AF165518 NM_018048	-108522	-	BC012550 NM_213657 NM_213658 AK310992	-267443	-	TSC_hg19_v1_chr12_-_10875782 AB463536 DQ892686 DQ895930	1051	-	TSC_hg19_v1_chr12_-_10875923 X95325 BC015913 BC015564 BC021926 BC009744 M24069 BC008801 X72712 AK314846 NM_001145426 NM_003651	1210	-	BC069091 AB529261 BC093992 BC113561 NM_023919	80505	-	AF251059|STYK1|55359|serine/threonine/tyrosine kinase 1##NM_018423|STYK1|55359|serine/threonine/tyrosine kinase 1##BC010905|MAGOHB|55110|mago-nashi homolog B (Drosophila)##AK022720|MAGOHB|55110|mago-nashi homolog B (Drosophila)##AK001154|MAGOHB|55110|mago-nashi homolog B (Drosophila)##AK096106|MAGOHB|55110|mago-nashi homolog B (Drosophila)##AF165518|MAGOHB|55110|mago-nashi homolog B (Drosophila)##NM_018048|MAGOHB|55110|mago-nashi homolog B (Drosophila)##BC012550|KLRC1|3821|killer cell lectin-like receptor subfamily C, member 1##NM_213657|KLRC1|3821|killer cell lectin-like receptor subfamily C, member 1##NM_213658|KLRC1|3821|killer cell lectin-like receptor subfamily C, member 1##AK310992|KLRC1|3821|killer cell lectin-like receptor subfamily C, member 1##DQ892686|CSDA|8531|cold shock domain protein A##DQ895930|CSDA|8531|cold shock domain protein A##X95325|CSDA|8531|cold shock domain protein A##BC015913|CSDA|8531|cold shock domain protein A##BC015564|CSDA|8531|cold shock domain protein A##BC021926|CSDA|8531|cold shock domain protein A##BC009744|CSDA|8531|cold shock domain protein A##M24069|CSDA|8531|cold shock domain protein A##BC008801|CSDA|8531|cold shock domain protein A##X72712|CSDA|8531|cold shock domain protein A##AK314846|CSDA|8531|cold shock domain protein A##NM_001145426|CSDA|8531|cold shock domain protein A##NM_003651|CSDA|8531|cold shock domain protein A##BC069091|TAS2R7|50837|taste receptor, type 2, member 7##BC093992|TAS2R7|50837|taste receptor, type 2, member 7##BC113561|TAS2R7|50837|taste receptor, type 2, member 7##NM_023919|TAS2R7|50837|taste receptor, type 2, member 7	0.0	0.0	
chr12	21057625	21057739	reg1009823.p1	5.699	+	BC058006 BC105597 NM_019844 BC022843 AK055874 BC070264	-94034	+	NM_001145945 NM_001145946 AK308729 AK296236 AF205076 NM_001145944 NM_017435 AK303713 AK294333 BC022461 AF260704	-209187	+	AK308317 NM_001244683	-332885	+	AF401642 NM_001009562	110947	+	BC020696 NM_006446 BC070172 AB026257 BC114376 BC054878 BC105596 AK312970	226454	+	NM_021094 AK296044	430150	-	BC058006|SLCO1B3|28234|solute carrier organic anion transporter family, member 1B3##BC105597|SLCO1B3|28234|solute carrier organic anion transporter family, member 1B3##NM_019844|SLCO1B3|28234|solute carrier organic anion transporter family, member 1B3##BC022843|SLCO1B3|28234|solute carrier organic anion transporter family, member 1B3##AK055874|SLCO1B3|28234|solute carrier organic anion transporter family, member 1B3##BC070264|SLCO1B3|28234|solute carrier organic anion transporter family, member 1B3##NM_001145945|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##NM_001145946|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AK308729|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AK296236|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AF205076|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##NM_001145944|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##NM_017435|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AK303713|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AK294333|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##BC022461|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AF260704|SLCO1C1|53919|solute carrier organic anion transporter family, member 1C1##AK308317|PDE3A|5139|phosphodiesterase 3A, cGMP-inhibited##NM_001244683|PDE3A|5139|phosphodiesterase 3A, cGMP-inhibited##AF401642|SLCO1B7|338821|solute carrier organic anion transporter family, member 1B7 (non-functional)##NM_001009562|SLCO1B7|338821|solute carrier organic anion transporter family, member 1B7 (non-functional)##BC020696|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##NM_006446|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##BC070172|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##AB026257|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##BC114376|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##BC054878|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##BC105596|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##AK312970|SLCO1B1|10599|solute carrier organic anion transporter family, member 1B1##NM_021094|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2##AK296044|SLCO1A2|6579|solute carrier organic anion transporter family, member 1A2	1.976375	0.0	denovo_WM_7:15:0.349	denovo_WM_7:16:0.265	denovo_WM_7:32:0.267	denovo_WM_7:33:0.351
chr17	46112348	46112447	reg1008491.p1	5.699	+	AF343090 TSC_hg19_v1_chr17_+_46048487 AF110322 AK225274 BC072435 AB062433 BC009957	-63903	+	TSC_hg19_v1_chr17_+_46048471 AF217982 AK023722	-63928	+	AK223387 NM_176096 TSC_hg19_v1_chr17_+_46048452	-63965	+	TSC_hg19_v1_chr17_-_46115160 AB590254 DQ893053 DQ896301 AB047849 BC015924 AB037938 NM_016429	2753	-	TSC_hg19_v1_chr17_+_46125712 NM_003204 BC010623 AK090459	13302	+	AL833530 TSC_hg19_v1_chr17_+_46125724	13327	+	AF343090|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF110322|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK225274|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC072435|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AB062433|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC009957|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF217982|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK023722|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK223387|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##NM_176096|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##DQ893053|COPZ2|51226|coatomer protein complex, subunit zeta 2##DQ896301|COPZ2|51226|coatomer protein complex, subunit zeta 2##AB047849|COPZ2|51226|coatomer protein complex, subunit zeta 2##BC015924|COPZ2|51226|coatomer protein complex, subunit zeta 2##AB037938|COPZ2|51226|coatomer protein complex, subunit zeta 2##NM_016429|COPZ2|51226|coatomer protein complex, subunit zeta 2##NM_003204|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##BC010623|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK090459|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AL833530|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1	0.749742	0.0	denovo_WM_7:-37:0.721
chr3	53074862	53075042	reg1002855.p2	5.699	+	TSC_hg19_v1_chr3_-_52931595 NM_001198974 NM_198563	-143295	-	TSC_hg19_v1_chr3_-_52931547 AY726591 BC047015	-143503	-	NM_205853	-205718	-	TSC_hg19_v1_chr3_-_53079286 NM_001005159	4357	-	TSC_hg19_v1_chr3_-_53080023 BC014614 AF168132	5042	-	TSC_hg19_v1_chr3_-_53080045 AK313965 NM_001005158 NM_016329	5111	-	NM_001198974|TMEM110-MUSTN1|100526772|TMEM110-MUSTN1 readthrough##NM_198563|TMEM110|375346|transmembrane protein 110##AY726591|TMEM110|375346|transmembrane protein 110##BC047015|TMEM110|375346|transmembrane protein 110##NM_205853|MUSTN1|389125|musculoskeletal, embryonic nuclear protein 1##NM_001005159|SFMBT1|51460|Scm-like with four mbt domains 1##BC014614|SFMBT1|51460|Scm-like with four mbt domains 1##AF168132|SFMBT1|51460|Scm-like with four mbt domains 1##AK313965|SFMBT1|51460|Scm-like with four mbt domains 1##NM_001005158|SFMBT1|51460|Scm-like with four mbt domains 1##NM_016329|SFMBT1|51460|Scm-like with four mbt domains 1	1.98948	0.0	denovo_WM_7:40:0.283	denovo_WM_7:41:0.236	denovo_WM_7:59:0.237	denovo_WM_7:60:0.284
chr10	6341821	6341960	reg1009070.p1	5.698	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-97014	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-154978	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-155006	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	280371	-	TSC_hg19_v1_chr10_+_6622460 AY007155	280590	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1109360	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	1.986371	0.0	denovo_WM_7:47:0.964	denovo_WM_7:62:0.968
chr10	7477761	7477862	reg1005306.p1	5.697	+	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	-24377	-	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-26561	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-855331	+	AK027849 TSC_hg19_v1_chr10_-_7659249	181406	-	BC004282 NM_032817	183813	-	AK027831 AB075833 TSC_hg19_v1_chr10_-_7682819	204969	-	BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AK027831|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AB075833|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	1.06278	0.0	denovo_WM_7:-7:0.796
chr1	234492343	234492458	reg1005739.p1	5.697	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-142394	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	-451788	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	-742481	+	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	16972	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	122460	-	TSC_hg19_v1_chr1_-_234743489 BC020516	251126	-	BC037878|SLC35F3|148641|solute carrier family 35, member F3##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.999206	0.0	denovo_WM_7:8:0.310	denovo_WM_7:9:0.310	denovo_WM_7:10:0.310
chr1	244513501	244513608	reg1009210.p1	5.697	+	TSC_hg19_v1_chr1_+_244217286 AK310634	-296259	+	BC078175 AJ001388 NM_006352	-297011	+	TSC_hg19_v1_chr1_+_244214584 AK291408 AK293892 BC036677	-298971	+	BC054479 NM_001012970	2382	+	CU680302 EU831433 EU831525 TSC_hg19_v1_chr1_-_244615212 AK025514 AK303886 BC012356	101622	-	TSC_hg19_v1_chr1_-_244615392 AK308749 NM_001126	101784	-	BC078175|ZNF238|10472|zinc finger protein 238##AJ001388|ZNF238|10472|zinc finger protein 238##NM_006352|ZNF238|10472|zinc finger protein 238##AK291408|ZNF238|10472|zinc finger protein 238##AK293892|ZNF238|10472|zinc finger protein 238##BC036677|ZNF238|10472|zinc finger protein 238##BC054479|C1orf100|200159|chromosome 1 open reading frame 100##NM_001012970|C1orf100|200159|chromosome 1 open reading frame 100##EU831433|ADSS|159|adenylosuccinate synthase##EU831525|ADSS|159|adenylosuccinate synthase##AK025514|ADSS|159|adenylosuccinate synthase##AK303886|ADSS|159|adenylosuccinate synthase##BC012356|ADSS|159|adenylosuccinate synthase##AK308749|ADSS|159|adenylosuccinate synthase##NM_001126|ADSS|159|adenylosuccinate synthase	0.999132	0.0	denovo_WM_7:72:0.239	denovo_WM_7:73:0.239	denovo_WM_7:74:0.239	denovo_WM_7:75:0.239
chr6	112085510	112085662	reg1007209.p1	5.697	+	BC032496 NM_153048	-5278	-	AB451293 AB451426 AB528738 CU689398 S74774 NM_153047	-44328	-	NM_001164281 NM_147686	-158113	-	M14676 TSC_hg19_v1_chr6_-_112194641 M14333	108949	-	TSC_hg19_v1_chr6_-_112194648 NM_002037	109069	-	BC012028 NM_003880 BC035250 NM_198239 BC105940 BC105941 AY358349 AF100781 AY358350 AB075040	289831	+	BC032496|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153048|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451293|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451426|FYN|2534|FYN oncogene related to SRC, FGR, YES##S74774|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153047|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_001164281|TRAF3IP2|10758|TRAF3 interacting protein 2##NM_147686|TRAF3IP2|10758|TRAF3 interacting protein 2##M14676|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14333|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_002037|FYN|2534|FYN oncogene related to SRC, FGR, YES##BC012028|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_003880|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC035250|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_198239|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105940|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105941|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358349|WISP3|8838|WNT1 inducible signaling pathway protein 3##AF100781|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358350|WISP3|8838|WNT1 inducible signaling pathway protein 3##AB075040|WISP3|8838|WNT1 inducible signaling pathway protein 3	0.0	0.0	
chr2	61922209	61922388	reg1008034.p2	5.696	+	TSC_hg19_v1_chr2_-_61765394 BX647758 NM_003400	-156893	-	TSC_hg19_v1_chr2_-_61765383 BC032847 CR749840	-156919	-	TSC_hg19_v1_chr2_-_61765358 AL833550	-156943	-	BC107162 BC107163 AK310908 AB527366 AM392542 AM392832 AM393518 TSC_hg19_v1_chr2_-_62081180 BX648834 BX649029 AK023367 BC036448 NM_001201543 NM_032180	158865	-	U38846 EU446763 AB385091 TSC_hg19_v1_chr2_-_62115685 AK294665	193366	-	AK129860 TSC_hg19_v1_chr2_-_62115719 AK295330	193420	-	BX647758|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##NM_003400|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC032847|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##CR749840|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AL833550|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC107162|FAM161A|84140|family with sequence similarity 161, member A##BC107163|FAM161A|84140|family with sequence similarity 161, member A##AK310908|FAM161A|84140|family with sequence similarity 161, member A##AM392542|FAM161A|84140|family with sequence similarity 161, member A##AM392832|FAM161A|84140|family with sequence similarity 161, member A##AM393518|FAM161A|84140|family with sequence similarity 161, member A##BX648834|FAM161A|84140|family with sequence similarity 161, member A##BX649029|FAM161A|84140|family with sequence similarity 161, member A##AK023367|FAM161A|84140|family with sequence similarity 161, member A##BC036448|FAM161A|84140|family with sequence similarity 161, member A##NM_001201543|FAM161A|84140|family with sequence similarity 161, member A##NM_032180|FAM161A|84140|family with sequence similarity 161, member A##U38846|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##EU446763|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK294665|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK129860|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK295330|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)	0.0	0.011083	
chr9	35593707	35593860	reg1008632.p1	5.696	+	BC129999 BC146928 BC146933 BC171840 BC171851 NM_001099951 NM_001164310	-29888	-	TSC_hg19_v1_chr9_+_35560424 BC082245 BC029647	-33316	+	TSC_hg19_v1_chr9_+_35538893 BC146654 AK294715 AK299805	-54869	+	TSC_hg19_v1_chr9_+_35605307 BC067130 NM_006285 BC038448	11520	+	TSC_hg19_v1_chr9_+_35605339 D50863	11577	+	TSC_hg19_v1_chr9_+_35605468 BC011799	11701	+	BC129999|FAM166B|730112|family with sequence similarity 166, member B##BC146928|FAM166B|730112|family with sequence similarity 166, member B##BC146933|FAM166B|730112|family with sequence similarity 166, member B##BC171840|FAM166B|730112|family with sequence similarity 166, member B##BC171851|FAM166B|730112|family with sequence similarity 166, member B##NM_001099951|FAM166B|730112|family with sequence similarity 166, member B##NM_001164310|FAM166B|730112|family with sequence similarity 166, member B##BC082245|RUSC2|9853|RUN and SH3 domain containing 2##BC029647|RUSC2|9853|RUN and SH3 domain containing 2##BC146654|RUSC2|9853|RUN and SH3 domain containing 2##AK299805|RUSC2|9853|RUN and SH3 domain containing 2##BC067130|TESK1|7016|testis-specific kinase 1##NM_006285|TESK1|7016|testis-specific kinase 1##BC038448|TESK1|7016|testis-specific kinase 1##D50863|TESK1|7016|testis-specific kinase 1##BC011799|TESK1|7016|testis-specific kinase 1	0.980711	0.0	denovo_WM_7:-23:0.481
chr1	143918426	143918590	reg1008678.p2	5.695	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-5378	-	HQ258079 BC130376 BC130378 NM_001123068	-150644	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-174103	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	445716	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	602423	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	602498	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	0.989257	0.0	denovo_WM_7:1:0.962
chr19	46146181	46146361	reg1006800.p1	5.695	+	NM_001242348 BC007358	-1345	+	TSC_hg19_v1_chr19_-_46142667 AF103939 NM_012155	-3597	-	AL096717 TSC_hg19_v1_chr19_-_46142656 BC032630 AK026616 AK308403 AK304299 AK225043	-3620	-	AK295905 NM_001193269	713	-	AK308580 AK296258 AK294668 NM_001193268 BC029304	2452	-	NM_000164 U39231 BC093723 BC101673 BC143300 BC143302 S79852	25236	+	NM_001242348|LOC100287177|100287177|uncharacterized LOC100287177##BC007358|LOC100287177|100287177|uncharacterized LOC100287177##AF103939|EML2|24139|echinoderm microtubule associated protein like 2##NM_012155|EML2|24139|echinoderm microtubule associated protein like 2##AL096717|EML2|24139|echinoderm microtubule associated protein like 2##BC032630|EML2|24139|echinoderm microtubule associated protein like 2##AK026616|EML2|24139|echinoderm microtubule associated protein like 2##AK308403|EML2|24139|echinoderm microtubule associated protein like 2##AK304299|EML2|24139|echinoderm microtubule associated protein like 2##AK225043|EML2|24139|echinoderm microtubule associated protein like 2##AK295905|EML2|24139|echinoderm microtubule associated protein like 2##NM_001193269|EML2|24139|echinoderm microtubule associated protein like 2##AK296258|EML2|24139|echinoderm microtubule associated protein like 2##AK294668|EML2|24139|echinoderm microtubule associated protein like 2##NM_001193268|EML2|24139|echinoderm microtubule associated protein like 2##BC029304|EML2|24139|echinoderm microtubule associated protein like 2##NM_000164|GIPR|2696|gastric inhibitory polypeptide receptor##U39231|GIPR|2696|gastric inhibitory polypeptide receptor##BC093723|GIPR|2696|gastric inhibitory polypeptide receptor##BC101673|GIPR|2696|gastric inhibitory polypeptide receptor##BC143300|GIPR|2696|gastric inhibitory polypeptide receptor##BC143302|GIPR|2696|gastric inhibitory polypeptide receptor##S79852|GIPR|2696|gastric inhibitory polypeptide receptor	1.957278	0.0	denovo_WM_7:2:0.315	denovo_WM_7:-3:0.372	denovo_WM_7:-20:0.712
chr2	152145792	152145911	reg1004472.p1	5.695	+	TSC_hg19_v1_chr2_-_152118378 BC136410 BC136411 AK127552 NM_198557	-27518	-	X97758 BC012513 TSC_hg19_v1_chr2_-_151344182 AK298007 AK311312 NM_005168 AK313224	-801687	-	TSC_hg19_v1_chr2_-_150444290 NM_015702	-1701544	-	TSC_hg19_v1_chr2_-_152146171 BC001268	301	-	U32849 AK124323 TSC_hg19_v1_chr2_-_152146429 AK291548 AK298754 NM_004688	552	-	NM_007115 M31165 BC030205 AB590644 AJ419936 AJ421518 CU688838 AF086484	68328	+	BC136410|RBM43|375287|RNA binding motif protein 43##BC136411|RBM43|375287|RNA binding motif protein 43##AK127552|RBM43|375287|RNA binding motif protein 43##NM_198557|RBM43|375287|RNA binding motif protein 43##X97758|RND3|390|Rho family GTPase 3##BC012513|RND3|390|Rho family GTPase 3##AK298007|RND3|390|Rho family GTPase 3##NM_005168|RND3|390|Rho family GTPase 3##AK313224|RND3|390|Rho family GTPase 3##NM_015702|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC001268|NMI|9111|N-myc (and STAT) interactor##U32849|NMI|9111|N-myc (and STAT) interactor##AK124323|NMI|9111|N-myc (and STAT) interactor##AK291548|NMI|9111|N-myc (and STAT) interactor##AK298754|NMI|9111|N-myc (and STAT) interactor##NM_004688|NMI|9111|N-myc (and STAT) interactor##NM_007115|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##M31165|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##BC030205|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AJ419936|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AJ421518|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AF086484|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6	0.99564	0.0	
chr5	98395569	98395671	reg1006743.p1	5.695	+	BC054860 BC117134 NM_001270 AF006513	-133392	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	-290579	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-1876633	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	1475453	+	AF529367 TSC_hg19_v1_chr5_+_99871306	1475650	+	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	1843308	-	BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF529367|FAM174A|345757|family with sequence similarity 174, member A##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	0.999219	0.0	denovo_WM_7:43:0.644
chr9	123688553	123688642	reg1005268.p1	5.695	+	AB590501 BT019408 CU692854 TSC_hg19_v1_chr9_-_123688443 U19261 BC024145	-194	-	AK295959 NM_001190947	-11748	-	BC108663 NM_001009936 NM_015651 TSC_hg19_v1_chr9_-_123639617	-48997	-	AK090468 NM_005658	575	-	TSC_hg19_v1_chr9_-_123691445 NM_001190945 AK315476	2863	-	M57729 BC113738 BC113740 AK310774 AK310780 BC022299 NM_001735	123947	-	BT019408|TRAF1|7185|TNF receptor-associated factor 1##U19261|TRAF1|7185|TNF receptor-associated factor 1##BC024145|TRAF1|7185|TNF receptor-associated factor 1##AK295959|TRAF1|7185|TNF receptor-associated factor 1##NM_001190947|TRAF1|7185|TNF receptor-associated factor 1##BC108663|PHF19|26147|PHD finger protein 19##NM_001009936|PHF19|26147|PHD finger protein 19##NM_015651|PHF19|26147|PHD finger protein 19##AK090468|TRAF1|7185|TNF receptor-associated factor 1##NM_005658|TRAF1|7185|TNF receptor-associated factor 1##NM_001190945|TRAF1|7185|TNF receptor-associated factor 1##AK315476|TRAF1|7185|TNF receptor-associated factor 1##M57729|C5|727|complement component 5##BC113738|C5|727|complement component 5##BC113740|C5|727|complement component 5##AK310774|C5|727|complement component 5##AK310780|C5|727|complement component 5##BC022299|C5|727|complement component 5##NM_001735|C5|727|complement component 5	0.999588	0.0	denovo_WM_7:9:0.842
chr12	123374803	123374956	reg1008321.p2	5.694	+	TSC_hg19_v1_chr12_+_123320050 AK298387 BC067085 NM_003959 AB014555	-54826	+	TSC_hg19_v1_chr12_+_123319294 AK090537	-55577	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	-115778	+	CU675175 TSC_hg19_v1_chr12_-_123380621	5736	-	TSC_hg19_v1_chr12_-_123380645 BC005882	5760	-	TSC_hg19_v1_chr12_-_123380691 AK022812 NM_024667	5817	-	AK298387|HIP1R|9026|huntingtin interacting protein 1 related##BC067085|HIP1R|9026|huntingtin interacting protein 1 related##NM_003959|HIP1R|9026|huntingtin interacting protein 1 related##AB014555|HIP1R|9026|huntingtin interacting protein 1 related##AK090537|HIP1R|9026|huntingtin interacting protein 1 related##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62##BC005882|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##AK022812|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##NM_024667|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)	1.897467	0.0	denovo_WM_7:12:0.983	denovo_WM_7:-86:0.508	denovo_WM_7:-89:0.266
chr13	70259008	70259122	reg1009178.p1	5.694	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	-2454561	-	AK289924 NM_022843	-8269411	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-8269812	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	423476	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	2181194	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	2181698	-	BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)	1.995459	0.0	denovo_WM_7:76:0.292	denovo_WM_7:77:0.211
chr3	169462485	169462648	reg1008299.p1	5.694	+	BC069498 GQ352634 U43292 AK304098 NM_001205194 NM_004991	-81077	-	BX640908 NM_001164000	-597045	-	TSC_hg19_v1_chr3_-_168864325 AK292865 AF487422 NM_001105078	-598204	-	BC128029 TSC_hg19_v1_chr3_-_169482848	20282	-	BC007289 AK055346 NM_032487	25076	-	TSC_hg19_v1_chr3_+_169490577 AK092022	28030	+	BC069498|MECOM|2122|MDS1 and EVI1 complex locus##GQ352634|MECOM|2122|MDS1 and EVI1 complex locus##U43292|MECOM|2122|MDS1 and EVI1 complex locus##AK304098|MECOM|2122|MDS1 and EVI1 complex locus##NM_001205194|MECOM|2122|MDS1 and EVI1 complex locus##NM_004991|MECOM|2122|MDS1 and EVI1 complex locus##BX640908|MECOM|2122|MDS1 and EVI1 complex locus##NM_001164000|MECOM|2122|MDS1 and EVI1 complex locus##AK292865|MECOM|2122|MDS1 and EVI1 complex locus##AF487422|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105078|MECOM|2122|MDS1 and EVI1 complex locus##BC128029|TERC|7012|telomerase RNA component##BC007289|ARPM1|84517|actin related protein M1##AK055346|ARPM1|84517|actin related protein M1##NM_032487|ARPM1|84517|actin related protein M1##AK092022|MYNN|55892|myoneurin	0.536131	0.668216	CTCF.p2:17:0.668	denovo_WM_7:32:0.474
chr7	73631804	73631983	reg1006531.p1	5.694	+	TSC_hg19_v1_chr7_+_73624361 AF252613	-7539	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	-7557	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	-7611	+	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	36818	-	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	36843	-	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	71894	+	AF252613|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2	0.146664	0.0	
chr12	123411542	123411722	reg1005399.p2	5.693	+	TSC_hg19_v1_chr12_-_123380691 AK022812 NM_024667	-30936	-	TSC_hg19_v1_chr12_-_123380645 BC005882	-30993	-	CU675175 TSC_hg19_v1_chr12_-_123380621	-31017	-	TSC_hg19_v1_chr12_-_123450999 AK027624 AB177852 AB112582 AB112583	39346	-	AF216494 AK304295 TSC_hg19_v1_chr12_-_123451051 NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444	39415	-	BC009181 BC071172 BC015605 BC047676 AK095481 AK023553 NM_024623 BC033857	47674	+	AK022812|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##NM_024667|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##BC005882|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##AK027624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB177852|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112582|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112583|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AF216494|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK304295|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243013|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243014|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019625|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_203444|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##BC009181|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC071172|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC015605|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC047676|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK095481|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK023553|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##NM_024623|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC033857|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2	0.990759	0.0	denovo_WM_7:99:0.491	denovo_WM_7:100:0.286	denovo_WM_7:101:0.214
chr18	72009776	72009895	reg1008002.p1	5.693	+	CR749350 NM_001174123	-26726	+	CR456990 CU677229 DQ891283 DQ894343 M60174 TSC_hg19_v1_chr18_-_71959202 M22865 AK026310 BC015182 AB209617 NM_001190807 NM_001914 NM_148923	-50656	-	NM_014177 TSC_hg19_v1_chr18_+_71815757 AK289923 AK313936 BC000892 AF161503	-194041	+	TSC_hg19_v1_chr18_-_72124545 NM_001044369	114694	-	TSC_hg19_v1_chr18_+_72163567 NM_018235	153623	+	TSC_hg19_v1_chr18_+_72163611 AK001692 AK300904 AK298309 BC001375	153780	+	CR749350|C18orf63|644041|chromosome 18 open reading frame 63##NM_001174123|C18orf63|644041|chromosome 18 open reading frame 63##CR456990|CYB5A|1528|cytochrome b5 type A (microsomal)##DQ891283|CYB5A|1528|cytochrome b5 type A (microsomal)##DQ894343|CYB5A|1528|cytochrome b5 type A (microsomal)##M60174|CYB5A|1528|cytochrome b5 type A (microsomal)##M22865|CYB5A|1528|cytochrome b5 type A (microsomal)##AK026310|CYB5A|1528|cytochrome b5 type A (microsomal)##BC015182|CYB5A|1528|cytochrome b5 type A (microsomal)##AB209617|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_001190807|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_001914|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_148923|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_014177|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##AK289923|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##AK313936|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##BC000892|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##AF161503|TIMM21|29090|translocase of inner mitochondrial membrane 21 homolog (yeast)##NM_001044369|FAM69C|125704|family with sequence similarity 69, member C##NM_018235|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK001692|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK300904|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK298309|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##BC001375|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)	0.0	0.032374	
chr3	76717882	76717982	reg1007527.p1	5.693	+	TSC_hg19_v1_chr3_-_75834698 AK123776	-883230	-	NM_001128223	-883678	-	BC111371 TSC_hg19_v1_chr3_+_75721431 BC039495	-996446	+	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	371348	+	TSC_hg19_v1_chr3_-_78666943 AK025535	1949053	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	2350655	-	AK123776|ZNF717|100131827|zinc finger protein 717##NM_001128223|ZNF717|100131827|zinc finger protein 717##BC111371|LOC401074|401074|uncharacterized LOC401074##BC039495|LOC401074|401074|uncharacterized LOC401074##DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)	0.989127	0.0	denovo_WM_7:-29:0.916
chr12	104854393	104854518	reg1006644.p1	5.691	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-3368	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-3647	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-3684	+	TSC_hg19_v1_chr12_+_105153261 AF131762	298822	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	467808	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	525635	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.990719	0.0	denovo_WM_7:-2:0.237	denovo_WM_7:-3:0.237	denovo_WM_7:-4:0.237	denovo_WM_7:-5:0.237
chr14	61642494	61642624	reg1008250.p1	5.691	+	TSC_hg19_v1_chr14_+_61447962 BX648332 BC110378 BC064429 BX248072 AF070578 AK303839	-194504	+	TSC_hg19_v1_chr14_+_61447932 BC050349	-194623	+	NM_001172702 NM_153811 AF543422 TSC_hg19_v1_chr14_+_61447920	-194682	+	AB464738 TSC_hg19_v1_chr14_-_61747887	105318	-	BC101726 BC113559 TSC_hg19_v1_chr14_-_61747937	105366	-	TSC_hg19_v1_chr14_-_61747957 AK091169 AX746825	105406	-	BX648332|SLC38A6|145389|solute carrier family 38, member 6##BC110378|SLC38A6|145389|solute carrier family 38, member 6##BC064429|SLC38A6|145389|solute carrier family 38, member 6##BX248072|SLC38A6|145389|solute carrier family 38, member 6##AF070578|SLC38A6|145389|solute carrier family 38, member 6##AK303839|SLC38A6|145389|solute carrier family 38, member 6##BC050349|SLC38A6|145389|solute carrier family 38, member 6##NM_001172702|SLC38A6|145389|solute carrier family 38, member 6##NM_153811|SLC38A6|145389|solute carrier family 38, member 6##AF543422|SLC38A6|145389|solute carrier family 38, member 6##BC101726|TMEM30B|161291|transmembrane protein 30B##BC113559|TMEM30B|161291|transmembrane protein 30B##AK091169|TMEM30B|161291|transmembrane protein 30B	1.987628	0.0	denovo_WM_7:60:0.268	denovo_WM_7:61:0.224	denovo_WM_7:79:0.232	denovo_WM_7:80:0.277
chr16	21595451	21595601	reg1007481.p1	5.691	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-63774	-	BC036263 NM_130464	-158869	-	BX648477 NM_001014444 NM_001888	-281139	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	15364	+	AF151839 TSC_hg19_v1_chr16_+_21611174	15628	+	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	68394	-	BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6	0.0	0.239196	CTCF.p2:-40:0.239
chr17	37761075	37761255	reg1007210.p2	5.691	+	TSC_hg19_v1_chr17_+_37618267 AF227198 BC140854 AB462974	-142879	+	TSC_hg19_v1_chr17_+_37617760 NM_015083 NM_016507 AK302645	-143413	+	CU687400 BC131783 AF055994 BC006517 Y13467 BC060758 TSC_hg19_v1_chr17_-_37607519 AK299789 AK314185 NM_004774	-153744	-	TSC_hg19_v1_chr17_-_37764168 BC022481 NM_006160	3008	-	NM_032192 AF464196 TSC_hg19_v1_chr17_+_37783188	22019	+	TSC_hg19_v1_chr17_+_37783204 AK123112 AK127542 AK129537 AF435972	22044	+	AF227198|CDK12|51755|cyclin-dependent kinase 12##BC140854|CDK12|51755|cyclin-dependent kinase 12##NM_015083|CDK12|51755|cyclin-dependent kinase 12##NM_016507|CDK12|51755|cyclin-dependent kinase 12##AK302645|CDK12|51755|cyclin-dependent kinase 12##BC131783|MED1|5469|mediator complex subunit 1##AF055994|MED1|5469|mediator complex subunit 1##BC006517|MED1|5469|mediator complex subunit 1##Y13467|MED1|5469|mediator complex subunit 1##BC060758|MED1|5469|mediator complex subunit 1##AK299789|MED1|5469|mediator complex subunit 1##AK314185|MED1|5469|mediator complex subunit 1##NM_004774|MED1|5469|mediator complex subunit 1##BC022481|NEUROD2|4761|neurogenic differentiation 2##NM_006160|NEUROD2|4761|neurogenic differentiation 2##NM_032192|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AF464196|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AK123112|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AK127542|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AK129537|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AF435972|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B	0.0	0.0	
chrX	7063577	7063720	reg1009738.p1	5.691	+	AF167078 AF167079 NM_016379	-610490	-	AK055471 BC034018 NM_181332	-916968	-	AB033086 AF376803 AX773938 NM_020742	-917761	-	TSC_hg19_v1_chrX_+_7065865 AM072428 DQ851172 FM209047	2303	+	M86934 AK300740 BC012494 TSC_hg19_v1_chrX_-_7066203 AK307088 AK223405 AK300985 AK313155 NM_001135565 NM_001178135 NM_001178136 NM_012080	2544	-	NM_000351 M16505 J04964 AK314034	73853	+	AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AM072428|STS|412|steroid sulfatase (microsomal), isozyme S##FM209047|STS|412|steroid sulfatase (microsomal), isozyme S##M86934|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300740|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##BC012494|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK307088|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK223405|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300985|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK313155|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001135565|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178135|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178136|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_012080|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_000351|STS|412|steroid sulfatase (microsomal), isozyme S##M16505|STS|412|steroid sulfatase (microsomal), isozyme S##J04964|STS|412|steroid sulfatase (microsomal), isozyme S##AK314034|STS|412|steroid sulfatase (microsomal), isozyme S	0.997767	0.0	denovo_WM_7:0:0.840
chr15	48650459	48650621	reg1008466.p1	5.690	+	TSC_hg19_v1_chr15_+_48624363 AK291515 NM_001948 AK312122 U31930 U62891 L11877 AB049113 M89913 DQ891191 DQ894375 CR541720 CR541781	-26139	+	TSC_hg19_v1_chr15_+_48623625 NM_001025248 NM_001025249 AK000629 BC070339 BC110377 AK298464 U90223 AB528727	-26876	+	NM_000338 NM_001184832 AK129998 AK298312 BC020860	-152043	+	TSC_hg19_v1_chr15_-_48937070 L13923	286543	-	TSC_hg19_v1_chr15_-_48937907 BC146854 AK304737 BC094721 NM_000138 X63556	287389	-	BC117182 TSC_hg19_v1_chr15_-_49103277 AB020719 BC069186 AK303805 BX648822 BC107721 NM_001194998 NM_014985	452722	-	AK291515|DUT|1854|deoxyuridine triphosphatase##NM_001948|DUT|1854|deoxyuridine triphosphatase##AK312122|DUT|1854|deoxyuridine triphosphatase##U31930|DUT|1854|deoxyuridine triphosphatase##U62891|DUT|1854|deoxyuridine triphosphatase##L11877|DUT|1854|deoxyuridine triphosphatase##AB049113|DUT|1854|deoxyuridine triphosphatase##M89913|DUT|1854|deoxyuridine triphosphatase##DQ891191|DUT|1854|deoxyuridine triphosphatase##DQ894375|DUT|1854|deoxyuridine triphosphatase##CR541720|DUT|1854|deoxyuridine triphosphatase##CR541781|DUT|1854|deoxyuridine triphosphatase##NM_001025248|DUT|1854|deoxyuridine triphosphatase##NM_001025249|DUT|1854|deoxyuridine triphosphatase##AK000629|DUT|1854|deoxyuridine triphosphatase##BC070339|DUT|1854|deoxyuridine triphosphatase##BC110377|DUT|1854|deoxyuridine triphosphatase##AK298464|DUT|1854|deoxyuridine triphosphatase##U90223|DUT|1854|deoxyuridine triphosphatase##NM_000338|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##NM_001184832|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK129998|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK298312|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##L13923|FBN1|2200|fibrillin 1##BC146854|FBN1|2200|fibrillin 1##AK304737|FBN1|2200|fibrillin 1##BC094721|FBN1|2200|fibrillin 1##NM_000138|FBN1|2200|fibrillin 1##X63556|FBN1|2200|fibrillin 1##BC117182|CEP152|22995|centrosomal protein 152kDa##AB020719|CEP152|22995|centrosomal protein 152kDa##BC069186|CEP152|22995|centrosomal protein 152kDa##AK303805|CEP152|22995|centrosomal protein 152kDa##BX648822|CEP152|22995|centrosomal protein 152kDa##BC107721|CEP152|22995|centrosomal protein 152kDa##NM_001194998|CEP152|22995|centrosomal protein 152kDa##NM_014985|CEP152|22995|centrosomal protein 152kDa	0.873177	0.264404	CTCF.p2:-19:0.211	denovo_WM_7:25:0.235	denovo_WM_7:33:0.366
chr17	44266387	44266553	reg1006587.p2	5.690	+	TSC_hg19_v1_chr17_+_44101553 AB073354	-164900	+	BC130319 BC130321 NM_001007532 AY179170	-189840	+	TSC_hg19_v1_chr17_+_44068829 AY526356	-197636	+	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	3684	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	3839	-	AK291259 NM_001193465	36257	-	AB073354|MAPT|4137|microtubule-associated protein tau##BC130319|STH|246744|saitohin##BC130321|STH|246744|saitohin##NM_001007532|STH|246744|saitohin##AY179170|STH|246744|saitohin##AY526356|MAPT|4137|microtubule-associated protein tau##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267	1.98663	0.0	denovo_WM_7:-44:0.265	denovo_WM_7:-45:0.221	denovo_WM_7:-63:0.231	denovo_WM_7:-64:0.275
chr3	185035684	185035813	reg1008798.p1	5.690	+	TSC_hg19_v1_chr3_+_185000783 NM_001242314 NM_001242317 AK297646 BC036593 AK312714 BC015996	-34999	+	BC038948 BC110460 L07077 AK301521 TSC_hg19_v1_chr3_-_184971838 AK223460 AK291798 BC011030 BC030982 NM_001166415 NM_001966	-63898	-	TSC_hg19_v1_chr3_-_184870849 AK091454 AX746993 NM_001025266	-164950	-	AK302951 TSC_hg19_v1_chr3_+_185046682 BC031677	10943	+	BC026249 NM_004721 AK296961 AB001872 BC111726	45184	+	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	180951	-	NM_001242314|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_001242317|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK297646|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC036593|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK312714|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC015996|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC038948|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC110460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##L07077|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK301521|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK223460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK291798|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC011030|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC030982|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001166415|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001966|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001025266|C3orf70|285382|chromosome 3 open reading frame 70##AK302951|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC031677|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A	1.065582	0.0	denovo_WM_7:9:0.884
chr12	111841199	111841379	reg1004272.p1	5.689	+	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	-34379	-	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	-34443	-	BC151245 NM_015267 AB006631 AF271236	-369417	+	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	2460	+	AK126309 TSC_hg19_v1_chr12_-_111893987	52634	-	TSC_hg19_v1_chr12_-_112036257 AK095017	194986	-	BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##BC151245|CUX2|23316|cut-like homeobox 2##NM_015267|CUX2|23316|cut-like homeobox 2##AB006631|CUX2|23316|cut-like homeobox 2##AF271236|CUX2|23316|cut-like homeobox 2##AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3##AK095017|ATXN2|6311|ataxin 2	0.0	0.0	
chr15	90846779	90846910	reg1007928.p1	5.689	+	TSC_hg19_v1_chr15_+_90808921 AB029315 NM_001033088 AL834503 BC007222 AL360142 AK312641 BC017192 BC019023 AF242770 AL355700 BC009389 BC096824 AF225423	-37924	+	TSC_hg19_v1_chr15_+_90792763 BC036668 NM_001029964 AK127965 BC052201	-54069	+	TSC_hg19_v1_chr15_+_90777469 BC127821 NM_001013657	-69370	+	AK289385 NM_001004309 BC067279 CR749343	48679	+	BC151834 D29640 TSC_hg19_v1_chr15_+_90931449	84610	+	TSC_hg19_v1_chr15_+_90931479 NM_003870	84633	+	AB029315|NGRN|51335|neugrin, neurite outgrowth associated##NM_001033088|NGRN|51335|neugrin, neurite outgrowth associated##AL834503|NGRN|51335|neugrin, neurite outgrowth associated##BC007222|NGRN|51335|neugrin, neurite outgrowth associated##AL360142|NGRN|51335|neugrin, neurite outgrowth associated##AK312641|NGRN|51335|neugrin, neurite outgrowth associated##BC017192|NGRN|51335|neugrin, neurite outgrowth associated##BC019023|NGRN|51335|neugrin, neurite outgrowth associated##AF242770|NGRN|51335|neugrin, neurite outgrowth associated##AL355700|NGRN|51335|neugrin, neurite outgrowth associated##BC009389|NGRN|51335|neugrin, neurite outgrowth associated##BC096824|NGRN|51335|neugrin, neurite outgrowth associated##AF225423|NGRN|51335|neugrin, neurite outgrowth associated##BC036668|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##NM_001029964|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##AK127965|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##BC127821|C15orf58|390637|chromosome 15 open reading frame 58##NM_001013657|C15orf58|390637|chromosome 15 open reading frame 58##AK289385|ZNF774|342132|zinc finger protein 774##NM_001004309|ZNF774|342132|zinc finger protein 774##BC067279|ZNF774|342132|zinc finger protein 774##CR749343|ZNF774|342132|zinc finger protein 774##BC151834|IQGAP1|8826|IQ motif containing GTPase activating protein 1##D29640|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_003870|IQGAP1|8826|IQ motif containing GTPase activating protein 1	0.99673	0.0	denovo_WM_7:-18:0.527	denovo_WM_7:-19:0.470
chr19	11692829	11693005	reg1001296.p2	5.689	+	BC111014 TSC_hg19_v1_chr19_-_11689776 AK307164 NM_001111035 NM_001111036	-3135	-	AK225912 NM_001111034	-3326	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	-4387	-	NM_145295 BC098416 AK095639 BC006279 AK074846 BC069232	15374	+	X51760 BC052597 AK308189 NM_001080493 AK300579 AK303213	156841	-	NM_152355 TSC_hg19_v1_chr19_+_11877884 AK095956	184943	+	BC111014|ACP5|54|acid phosphatase 5, tartrate resistant##AK307164|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111035|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111036|ACP5|54|acid phosphatase 5, tartrate resistant##AK225912|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111034|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant##NM_145295|ZNF627|199692|zinc finger protein 627##BC098416|ZNF627|199692|zinc finger protein 627##AK095639|ZNF627|199692|zinc finger protein 627##BC006279|ZNF627|199692|zinc finger protein 627##AK074846|ZNF627|199692|zinc finger protein 627##BC069232|ZNF627|199692|zinc finger protein 627##X51760|ZNF823|55552|zinc finger protein 823##BC052597|ZNF823|55552|zinc finger protein 823##AK308189|ZNF823|55552|zinc finger protein 823##NM_001080493|ZNF823|55552|zinc finger protein 823##AK300579|ZNF823|55552|zinc finger protein 823##AK303213|ZNF823|55552|zinc finger protein 823##NM_152355|ZNF441|126068|zinc finger protein 441##AK095956|ZNF441|126068|zinc finger protein 441	0.0	0.0	
chr19	50178893	50178996	reg1006268.p1	5.689	+	AB590882 TSC_hg19_v1_chr19_+_50169270 BC007724	-9757	+	TSC_hg19_v1_chr19_-_50169088 BC000660 AK314421 BC009395 AK057577 AK292027 NM_001197122 NM_001197123 NM_001197124 NM_001197125 NM_001197126 NM_001197127 NM_001197128 NM_001571	-9865	-	TSC_hg19_v1_chr19_-_50168868 Z56281 HM357932 HM357933 HM357934 HM357935 HM357936 HM357937	-10031	-	AK304660 NM_001207042 NM_001536 NM_198318 TSC_hg19_v1_chr19_+_50180491	1505	+	AK295973 TSC_hg19_v1_chr19_+_50180493 AB590883 BC019268 AY775289 D66904 Y10805 Y10806 Y10807 BC109282 BC109283	1577	+	BC032764 NM_001101340	12986	+	BC007724|BCL2L12|83596|BCL2-like 12 (proline rich)##BC000660|IRF3|3661|interferon regulatory factor 3##AK314421|IRF3|3661|interferon regulatory factor 3##BC009395|IRF3|3661|interferon regulatory factor 3##AK057577|IRF3|3661|interferon regulatory factor 3##AK292027|IRF3|3661|interferon regulatory factor 3##NM_001197122|IRF3|3661|interferon regulatory factor 3##NM_001197123|IRF3|3661|interferon regulatory factor 3##NM_001197124|IRF3|3661|interferon regulatory factor 3##NM_001197125|IRF3|3661|interferon regulatory factor 3##NM_001197126|IRF3|3661|interferon regulatory factor 3##NM_001197127|IRF3|3661|interferon regulatory factor 3##NM_001197128|IRF3|3661|interferon regulatory factor 3##NM_001571|IRF3|3661|interferon regulatory factor 3##Z56281|IRF3|3661|interferon regulatory factor 3##HM357932|IRF3|3661|interferon regulatory factor 3##HM357933|IRF3|3661|interferon regulatory factor 3##HM357934|IRF3|3661|interferon regulatory factor 3##HM357935|IRF3|3661|interferon regulatory factor 3##HM357936|IRF3|3661|interferon regulatory factor 3##HM357937|IRF3|3661|interferon regulatory factor 3##AK304660|PRMT1|3276|protein arginine methyltransferase 1##NM_001207042|PRMT1|3276|protein arginine methyltransferase 1##NM_001536|PRMT1|3276|protein arginine methyltransferase 1##NM_198318|PRMT1|3276|protein arginine methyltransferase 1##AK295973|PRMT1|3276|protein arginine methyltransferase 1##BC019268|PRMT1|3276|protein arginine methyltransferase 1##AY775289|PRMT1|3276|protein arginine methyltransferase 1##D66904|PRMT1|3276|protein arginine methyltransferase 1##Y10805|PRMT1|3276|protein arginine methyltransferase 1##Y10806|PRMT1|3276|protein arginine methyltransferase 1##Y10807|PRMT1|3276|protein arginine methyltransferase 1##BC109282|PRMT1|3276|protein arginine methyltransferase 1##BC109283|PRMT1|3276|protein arginine methyltransferase 1##BC032764|C19orf76|199800|chromosome 19 open reading frame 76##NM_001101340|C19orf76|199800|chromosome 19 open reading frame 76	1.334449	0.0	denovo_WM_7:-82:0.339
chr20	18734662	18734842	reg1008914.p2	5.689	+	TSC_hg19_v1_chr20_+_18568661 NM_080820 BC045167 AK074304 BC100923 BC100924 BC100925 BC100926 AK291440 AF332356 CU692252	-166102	+	BC092494 AK024594 BC015983 TSC_hg19_v1_chr20_+_18548094 BC039422 BC127753 BC127754 BC141963 BC141964 BC150559 BC150560 AF147354	-186652	+	TSC_hg19_v1_chr20_+_18488583 AK299171 BC001575 AK299513 NM_001172745 BC005404	-246126	+	AF418568 AF418570 AX721297 NM_178483 AK130970 AY248902 BC105121 BC112024	59646	+	NM_001242671	76086	-	TSC_hg19_v1_chr20_+_19193285 AF288087 NM_020689	458533	+	NM_080820|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC045167|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AK074304|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100923|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100924|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100925|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100926|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AK291440|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AF332356|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC092494|LINC00493|388789|long intergenic non-protein coding RNA 493##AK024594|LINC00493|388789|long intergenic non-protein coding RNA 493##BC015983|LINC00493|388789|long intergenic non-protein coding RNA 493##BC039422|LINC00493|388789|long intergenic non-protein coding RNA 493##BC127753|LINC00493|388789|long intergenic non-protein coding RNA 493##BC127754|LINC00493|388789|long intergenic non-protein coding RNA 493##BC141963|LINC00493|388789|long intergenic non-protein coding RNA 493##BC141964|LINC00493|388789|long intergenic non-protein coding RNA 493##BC150559|LINC00493|388789|long intergenic non-protein coding RNA 493##BC150560|LINC00493|388789|long intergenic non-protein coding RNA 493##AF147354|LINC00493|388789|long intergenic non-protein coding RNA 493##AK299171|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##BC001575|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##AK299513|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##NM_001172745|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##BC005404|SEC23B|10483|Sec23 homolog B (S. cerevisiae)##AF418568|C20orf79|140856|chromosome 20 open reading frame 79##AF418570|C20orf79|140856|chromosome 20 open reading frame 79##NM_178483|C20orf79|140856|chromosome 20 open reading frame 79##AK130970|C20orf79|140856|chromosome 20 open reading frame 79##AY248902|C20orf79|140856|chromosome 20 open reading frame 79##BC105121|C20orf79|140856|chromosome 20 open reading frame 79##BC112024|C20orf79|140856|chromosome 20 open reading frame 79##NM_001242671|LOC100128496|100128496|uncharacterized LOC100128496##AF288087|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##NM_020689|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	0.485062	0.0	
chr2	157191163	157191322	reg1003696.p2	5.689	+	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	-2079	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	-4552	-	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1636053	+	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	100716	+	TSC_hg19_v1_chr2_+_157291981 AK290057	100763	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	100992	+	S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK290057|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.0	0.0	
chr2	56643945	56644098	reg1005639.p1	5.689	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-231112	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-232255	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-232816	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	1629733	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	1629967	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	1824461	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	2.251163	0.0	denovo_WM_7:11:0.527	denovo_WM_7:12:0.470	denovo_WM_7:-49:0.898	denovo_WM_7:63:0.259
chr18	13611121	13611301	reg1005790.p4	5.688	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-392426	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-619866	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-663147	+	NM_001003674 NM_001003675	453	+	AF009426 AF009427 NM_004338 NM_181483	9655	+	TSC_hg19_v1_chr18_-_13726549 AK055618	115295	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr13	26902091	26902251	reg1011738.p1	5.687	+	BC069634 BC104492 BC105950 BC107601 NM_001260 X85753 AY702976 CU686950	-73405	+	TSC_hg19_v1_chr13_+_26828240 BC094784	-73930	+	TSC_hg19_v1_chr13_-_26796406 AF293342 AJ010346 CR749238 AK312435 NM_005977	-105746	-	TSC_hg19_v1_chr13_+_27131854 AK289845 BC050283 NM_006646	229663	+	TSC_hg19_v1_chr13_+_27131892 AF454702	229731	+	AK312602 AK294378 AK311107 AK307756 AK290220 NM_005288 TSC_hg19_v1_chr13_-_27334929	432682	-	BC069634|CDK8|1024|cyclin-dependent kinase 8##BC104492|CDK8|1024|cyclin-dependent kinase 8##BC105950|CDK8|1024|cyclin-dependent kinase 8##BC107601|CDK8|1024|cyclin-dependent kinase 8##NM_001260|CDK8|1024|cyclin-dependent kinase 8##X85753|CDK8|1024|cyclin-dependent kinase 8##AY702976|CDK8|1024|cyclin-dependent kinase 8##BC094784|CDK8|1024|cyclin-dependent kinase 8##AF293342|RNF6|6049|ring finger protein (C3H2C3 type) 6##AJ010346|RNF6|6049|ring finger protein (C3H2C3 type) 6##CR749238|RNF6|6049|ring finger protein (C3H2C3 type) 6##AK312435|RNF6|6049|ring finger protein (C3H2C3 type) 6##NM_005977|RNF6|6049|ring finger protein (C3H2C3 type) 6##AK289845|WASF3|10810|WAS protein family, member 3##BC050283|WASF3|10810|WAS protein family, member 3##NM_006646|WASF3|10810|WAS protein family, member 3##AF454702|WASF3|10810|WAS protein family, member 3##AK312602|GPR12|2835|G protein-coupled receptor 12##AK294378|GPR12|2835|G protein-coupled receptor 12##AK311107|GPR12|2835|G protein-coupled receptor 12##AK307756|GPR12|2835|G protein-coupled receptor 12##AK290220|GPR12|2835|G protein-coupled receptor 12##NM_005288|GPR12|2835|G protein-coupled receptor 12	0.999534	0.0	denovo_WM_7:-62:0.720
chr1	40859114	40859223	reg1007907.p2	5.687	+	AK308280 NM_001198979	-152	+	NM_001198978 AK303975 AL133206	-18842	+	TSC_hg19_v1_chr1_+_40839438 AK313105	-19729	+	AK316218 NM_001198980 AK298702	3320	+	AK091612 AX747095 AL137241 TSC_hg19_v1_chr1_+_40915792	56632	+	NM_023070	57168	+	AK308280|SMAP2|64744|small ArfGAP2##NM_001198979|SMAP2|64744|small ArfGAP2##NM_001198978|SMAP2|64744|small ArfGAP2##AK303975|SMAP2|64744|small ArfGAP2##AL133206|SMAP2|64744|small ArfGAP2##AK313105|SMAP2|64744|small ArfGAP2##AK316218|SMAP2|64744|small ArfGAP2##NM_001198980|SMAP2|64744|small ArfGAP2##AK298702|SMAP2|64744|small ArfGAP2##AK091612|ZNF643|65243|zinc finger protein 643##AL137241|ZNF643|65243|zinc finger protein 643##NM_023070|ZNF643|65243|zinc finger protein 643	0.999343	0.0	
chr1	53166708	53166833	reg1008753.p1	5.687	+	TSC_hg19_v1_chr1_-_53164026 BC005992 AK022501 NM_023077	-2740	-	TSC_hg19_v1_chr1_-_53164020 AK225087	-2753	-	TSC_hg19_v1_chr1_-_53164009 BC015313 AK225041	-2772	-	TSC_hg19_v1_chr1_+_53192124 AK296460 NM_024646 AB051517	25348	+	TSC_hg19_v1_chr1_-_53238345 D28429	71573	-	AY271826 NM_001004339	141412	+	BC005992|SELRC1|65260|Sel1 repeat containing 1##AK022501|SELRC1|65260|Sel1 repeat containing 1##NM_023077|SELRC1|65260|Sel1 repeat containing 1##AK225087|SELRC1|65260|Sel1 repeat containing 1##BC015313|SELRC1|65260|Sel1 repeat containing 1##AK225041|SELRC1|65260|Sel1 repeat containing 1##AK296460|ZYG11B|79699|zyg-11 homolog B (C. elegans)##NM_024646|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AB051517|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AY271826|ZYG11A|440590|zyg-11 homolog A (C. elegans)##NM_001004339|ZYG11A|440590|zyg-11 homolog A (C. elegans)	0.162686	0.05869	
chr17	57719359	57719464	reg1006437.p1	5.687	+	TSC_hg19_v1_chr17_+_57697403 AB587306	-21966	+	TSC_hg19_v1_chr17_+_57697289 AK127134 D21260	-22110	+	TSC_hg19_v1_chr17_+_57697282 BC051800	-22131	+	X55878 TSC_hg19_v1_chr17_+_57743577	24128	+	TSC_hg19_v1_chr17_-_57784773 BC006807 BC017457 AK057033 AF151905 NM_016077	65394	-	NM_030938 TSC_hg19_v1_chr17_+_57784931	65489	+	AK127134|CLTC|1213|clathrin, heavy chain (Hc)##D21260|CLTC|1213|clathrin, heavy chain (Hc)##BC051800|CLTC|1213|clathrin, heavy chain (Hc)##X55878|CLTC|1213|clathrin, heavy chain (Hc)##BC006807|PTRH2|51651|peptidyl-tRNA hydrolase 2##BC017457|PTRH2|51651|peptidyl-tRNA hydrolase 2##AK057033|PTRH2|51651|peptidyl-tRNA hydrolase 2##AF151905|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_016077|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_030938|VMP1|81671|vacuole membrane protein 1	1.70628	0.0	denovo_WM_7:-33:0.630	denovo_WM_7:-48:0.691
chr22	33868469	33868590	reg1002754.p1	5.687	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-414174	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-465803	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-670777	+	AJ007583 AB011181 NM_004737 NM_133642	447841	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1593620	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1784947	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.0	0.0	
chr9	139965274	139965454	reg1000112.p2	5.687	+	TSC_hg19_v1_chr9_-_139965024 BC048267 NM_178448 DQ150361	-331	-	AF144748 EF495152 CU690182 DQ892410 DQ895623 U91510 BC035738 NM_001246 NM_203468	-16889	-	TSC_hg19_v1_chr9_-_139940630 AF327349 AK074793 AF285836 NM_015392	-24725	-	TSC_hg19_v1_chr9_+_139971968 NM_207309	6589	+	AL832421 TSC_hg19_v1_chr9_+_139972236 AK095393 BC106035	6876	+	BC032375 TSC_hg19_v1_chr9_-_139981113 BC020858	15775	-	BC048267|C9orf140|89958|chromosome 9 open reading frame 140##NM_178448|C9orf140|89958|chromosome 9 open reading frame 140##DQ150361|C9orf140|89958|chromosome 9 open reading frame 140##AF144748|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##EF495152|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ892410|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##DQ895623|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##U91510|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##BC035738|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_001246|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##NM_203468|ENTPD2|954|ectonucleoside triphosphate diphosphohydrolase 2##AF327349|NPDC1|56654|neural proliferation, differentiation and control, 1##AK074793|NPDC1|56654|neural proliferation, differentiation and control, 1##AF285836|NPDC1|56654|neural proliferation, differentiation and control, 1##NM_015392|NPDC1|56654|neural proliferation, differentiation and control, 1##NM_207309|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AL832421|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AK095393|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC106035|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC032375|LOC100289341|100289341|uncharacterized LOC100289341##BC020858|LOC100289341|100289341|uncharacterized LOC100289341	0.0	0.0	
chr18	11921809	11921926	reg1008792.p1	5.686	+	AF363484 NM_001242904 NM_023075	-13081	-	AX775853 AX775855 AL833636 TSC_hg19_v1_chr18_-_11908364	-13511	-	BC002877 TSC_hg19_v1_chr18_-_11908317 AK054639 AX775859 DQ786245 BC073994 AK309948 AF289560	-13561	-	TSC_hg19_v1_chr18_+_11981424 AF014398 NM_014214	59562	+	TSC_hg19_v1_chr18_+_11981502 BC031560	59632	+	TSC_hg19_v1_chr18_+_11981575 BC017176 AF200432 BT007061	59743	+	AF363484|MPPE1|65258|metallophosphoesterase 1##NM_001242904|MPPE1|65258|metallophosphoesterase 1##NM_023075|MPPE1|65258|metallophosphoesterase 1##AL833636|MPPE1|65258|metallophosphoesterase 1##BC002877|MPPE1|65258|metallophosphoesterase 1##AK054639|MPPE1|65258|metallophosphoesterase 1##DQ786245|MPPE1|65258|metallophosphoesterase 1##BC073994|MPPE1|65258|metallophosphoesterase 1##AK309948|MPPE1|65258|metallophosphoesterase 1##AF289560|MPPE1|65258|metallophosphoesterase 1##AF014398|IMPA2|3613|inositol(myo)-1(or 4)-monophosphatase 2##NM_014214|IMPA2|3613|inositol(myo)-1(or 4)-monophosphatase 2##BC031560|IMPA2|3613|inositol(myo)-1(or 4)-monophosphatase 2##BC017176|IMPA2|3613|inositol(myo)-1(or 4)-monophosphatase 2##AF200432|IMPA2|3613|inositol(myo)-1(or 4)-monophosphatase 2##BT007061|IMPA2|3613|inositol(myo)-1(or 4)-monophosphatase 2	1.916975	0.0	denovo_WM_7:-44:0.751	denovo_WM_7:-59:0.938
chr22	39838364	39838517	reg1007296.p1	5.686	+	TSC_hg19_v1_chr22_+_39795812 AK291668 AK316004 AK308903 AB591024 CU690722	-42629	+	BC050554 NM_006116 NM_153497 TSC_hg19_v1_chr22_+_39795796 AK296314 BC038582 AF425640 AK312456 U49928	-42670	+	AJ002303 NM_145738	-78266	+	TSC_hg19_v1_chr22_+_39853325 NM_002409	14880	+	TSC_hg19_v1_chr22_+_39853534 BC075025 BC075026 BC113383 BC113718	15096	+	NM_001098270 AK313664 CR456519 D13789 AB463105 CU013119 CU013407 HQ258450	44850	+	AK291668|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK316004|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK308903|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##BC050554|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_006116|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_153497|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK296314|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##BC038582|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AF425640|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK312456|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##U49928|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AJ002303|SYNGR1|9145|synaptogyrin 1##NM_145738|SYNGR1|9145|synaptogyrin 1##NM_002409|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075025|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075026|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113383|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113718|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##NM_001098270|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##AK313664|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CR456519|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##D13789|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013119|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013407|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##HQ258450|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	0.0	0.0	
chr18	56811852	56812021	reg1006239.p1	5.685	+	TSC_hg19_v1_chr18_+_56807119 AK314107 AF212233 AK311213 NM_033280 AK295346 AK307127 BC009703 CU679449	-4789	+	TSC_hg19_v1_chr18_+_56531281 BC036366	-280587	+	TSC_hg19_v1_chr18_+_56530714 AB046849	-281081	+	TSC_hg19_v1_chr18_+_56887389 AK307264 BC004488 NM_001012512 NM_001012513 NM_002091 K02054 DQ893451 DQ896223 AB528662 AB102889 BT006803	75507	+	BC051901 AF115392 NM_013435 AB593018	128718	-	EU831768 EU831846 AY286502 BC065562 BX640655 AB593158 BX648518 BC106887 BC106888 AK123184 NM_181654	173850	-	AK314107|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AF212233|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##NM_033280|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK295346|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307127|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC009703|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC036366|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##AK307264|GRP|2922|gastrin-releasing peptide##BC004488|GRP|2922|gastrin-releasing peptide##NM_001012512|GRP|2922|gastrin-releasing peptide##NM_001012513|GRP|2922|gastrin-releasing peptide##NM_002091|GRP|2922|gastrin-releasing peptide##K02054|GRP|2922|gastrin-releasing peptide##DQ893451|GRP|2922|gastrin-releasing peptide##DQ896223|GRP|2922|gastrin-releasing peptide##AB102889|GRP|2922|gastrin-releasing peptide##BT006803|GRP|2922|gastrin-releasing peptide##BC051901|RAX|30062|retina and anterior neural fold homeobox##AF115392|RAX|30062|retina and anterior neural fold homeobox##NM_013435|RAX|30062|retina and anterior neural fold homeobox##AB593018|RAX|30062|retina and anterior neural fold homeobox##EU831768|CPLX4|339302|complexin 4##EU831846|CPLX4|339302|complexin 4##AY286502|CPLX4|339302|complexin 4##BC065562|CPLX4|339302|complexin 4##BX640655|CPLX4|339302|complexin 4##AB593158|CPLX4|339302|complexin 4##BX648518|CPLX4|339302|complexin 4##BC106887|CPLX4|339302|complexin 4##BC106888|CPLX4|339302|complexin 4##AK123184|CPLX4|339302|complexin 4##NM_181654|CPLX4|339302|complexin 4	1.89326	0.0	denovo_WM_7:59:0.260	denovo_WM_7:61:0.279
chr7	5274142	5274300	reg1004063.p2	5.685	+	BC016912 AF151808 NM_001033520 AY691426	-20329	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-44236	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-44306	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	48385	+	TSC_hg19_v1_chr7_-_5460842 BC140723	186685	-	AY129022 TSC_hg19_v1_chr7_-_5461555	187320	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.953407	0.0	denovo_WM_7:36:0.942
chr1	174063064	174063179	reg1008582.p2	5.684	+	TSC_hg19_v1_chr1_-_173991524 AB007961	-71606	-	AB095945 BC136784 BC144408 AK122948 NM_172071	-100992	-	AK093501 AX748170 TSC_hg19_v1_chr1_-_173933260	-129903	-	BC041888 NM_014857 TSC_hg19_v1_chr1_+_174128608	65479	+	AK095838 TSC_hg19_v1_chr1_+_174128676 AL157958	65571	+	BC095532 NM_005684 CU688296 CU688298 BC067456 BC067457 BC067458 BC067459 BC067460 BC069460 HQ995526	354109	+	AB095945|RC3H1|149041|ring finger and CCCH-type domains 1##BC136784|RC3H1|149041|ring finger and CCCH-type domains 1##BC144408|RC3H1|149041|ring finger and CCCH-type domains 1##AK122948|RC3H1|149041|ring finger and CCCH-type domains 1##NM_172071|RC3H1|149041|ring finger and CCCH-type domains 1##AK093501|RC3H1|149041|ring finger and CCCH-type domains 1##BC041888|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_014857|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK095838|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL157958|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC095532|GPR52|9293|G protein-coupled receptor 52##NM_005684|GPR52|9293|G protein-coupled receptor 52##BC067456|GPR52|9293|G protein-coupled receptor 52##BC067457|GPR52|9293|G protein-coupled receptor 52##BC067458|GPR52|9293|G protein-coupled receptor 52##BC067459|GPR52|9293|G protein-coupled receptor 52##BC067460|GPR52|9293|G protein-coupled receptor 52##BC069460|GPR52|9293|G protein-coupled receptor 52##HQ995526|GPR52|9293|G protein-coupled receptor 52	0.999408	0.0	
chr12	68985610	68985716	reg1004349.p1	5.684	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-259557	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-338359	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-366111	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	18983	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	19032	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	19045	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.047513	0.149221	
chr18	30503083	30503195	reg1007837.p1	5.684	+	BC021267 AB037805 NM_020805	-150232	-	AL834491 BC121067 BC121068 AK025263 NM_001242409 NM_022751	-452719	-	TSC_hg19_v1_chr18_-_29993196 D28353	-509944	-	BC130535 BC144178 BC144179 NM_001105528	516873	-	BC062719 BC091517 AK126038 NM_198995	517520	-	BX648108 TSC_hg19_v1_chr18_-_31158297	655090	-	BC021267|KLHL14|57565|kelch-like 14 (Drosophila)##AB037805|KLHL14|57565|kelch-like 14 (Drosophila)##NM_020805|KLHL14|57565|kelch-like 14 (Drosophila)##AL834491|FAM59A|64762|family with sequence similarity 59, member A##BC121067|FAM59A|64762|family with sequence similarity 59, member A##BC121068|FAM59A|64762|family with sequence similarity 59, member A##AK025263|FAM59A|64762|family with sequence similarity 59, member A##NM_001242409|FAM59A|64762|family with sequence similarity 59, member A##NM_022751|FAM59A|64762|family with sequence similarity 59, member A##BC130535|C18orf34|374864|chromosome 18 open reading frame 34##BC144178|C18orf34|374864|chromosome 18 open reading frame 34##BC144179|C18orf34|374864|chromosome 18 open reading frame 34##NM_001105528|C18orf34|374864|chromosome 18 open reading frame 34##BC062719|C18orf34|374864|chromosome 18 open reading frame 34##BC091517|C18orf34|374864|chromosome 18 open reading frame 34##AK126038|C18orf34|374864|chromosome 18 open reading frame 34##NM_198995|C18orf34|374864|chromosome 18 open reading frame 34	0.057522	0.0	
chr6	158588550	158588711	reg1007297.p2	5.684	+	NM_001178088 TSC_hg19_v1_chr6_+_158438191 BX648749 AB002346 AF039945	-150458	+	TSC_hg19_v1_chr6_+_158402928 AY152396 AB384465	-185621	+	TSC_hg19_v1_chr6_+_158402923 AF318616	-185711	+	BC048335 BC001705 BC028594 BX648104 TSC_hg19_v1_chr6_-_158589279	610	-	TSC_hg19_v1_chr6_-_158589295 AK027823 BC060795 NM_032861	670	-	NM_207118 TSC_hg19_v1_chr6_+_158589381 AK055106 BC056906 AJ634743	761	+	NM_001178088|SYNJ2|8871|synaptojanin 2##BX648749|SYNJ2|8871|synaptojanin 2##AB002346|SYNJ2|8871|synaptojanin 2##AF039945|SYNJ2|8871|synaptojanin 2##AY152396|SYNJ2|8871|synaptojanin 2##AF318616|SYNJ2|8871|synaptojanin 2##BC048335|SERAC1|84947|serine active site containing 1##BC001705|SERAC1|84947|serine active site containing 1##BC028594|SERAC1|84947|serine active site containing 1##BX648104|SERAC1|84947|serine active site containing 1##AK027823|SERAC1|84947|serine active site containing 1##BC060795|SERAC1|84947|serine active site containing 1##NM_032861|SERAC1|84947|serine active site containing 1##NM_207118|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AK055106|GTF2H5|404672|general transcription factor IIH, polypeptide 5##BC056906|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AJ634743|GTF2H5|404672|general transcription factor IIH, polypeptide 5	0.997734	0.0	denovo_WM_7:-49:0.238	denovo_WM_7:-50:0.238	denovo_WM_7:-51:0.238	denovo_WM_7:-52:0.238
chr2	191776977	191777157	reg1006894.p2	5.683	+	AF097492 TSC_hg19_v1_chr2_+_191745984	-31115	+	AF223943 TSC_hg19_v1_chr2_+_191745810 AB463054	-31267	+	TSC_hg19_v1_chr2_+_191745568 AF097495 Y08264 AF327434	-31483	+	TSC_hg19_v1_chr2_-_191872323 BC141921	95285	-	CR749636 TSC_hg19_v1_chr2_-_191878882	101815	-	TSC_hg19_v1_chr2_-_191878883 AK315002 BC002704	101827	-	AF097492|GLS|2744|glutaminase##AF223943|GLS|2744|glutaminase##AF097495|GLS|2744|glutaminase##Y08264|GLS|2744|glutaminase##AF327434|GLS|2744|glutaminase##BC141921|STAT1|6772|signal transducer and activator of transcription 1, 91kDa##CR749636|STAT1|6772|signal transducer and activator of transcription 1, 91kDa##AK315002|STAT1|6772|signal transducer and activator of transcription 1, 91kDa##BC002704|STAT1|6772|signal transducer and activator of transcription 1, 91kDa	1.702176	0.0	denovo_WM_7:-22:0.601
chr2	233893730	233893828	reg1008470.p1	5.683	+	TSC_hg19_v1_chr2_-_233877933 BC031573 NM_019850 AK025225 AK300953	-15829	-	TSC_hg19_v1_chr2_-_233877913 AK298315	-15872	-	TSC_hg19_v1_chr2_-_233792866 AK297390 NM_001114090 BC073962	-100920	-	BC069151 BC107053 NM_005383	3602	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	31280	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	31337	+	BC031573|NGEF|25791|neuronal guanine nucleotide exchange factor##NM_019850|NGEF|25791|neuronal guanine nucleotide exchange factor##AK300953|NGEF|25791|neuronal guanine nucleotide exchange factor##AK298315|NGEF|25791|neuronal guanine nucleotide exchange factor##AK297390|NGEF|25791|neuronal guanine nucleotide exchange factor##NM_001114090|NGEF|25791|neuronal guanine nucleotide exchange factor##BC073962|NGEF|25791|neuronal guanine nucleotide exchange factor##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa	0.213893	0.832126	CTCF.p2:-14:0.832	denovo_WM_7:33:0.214
chr10	70815102	70815237	reg1005063.p1	5.682	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-66634	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-99237	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-154052	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	32667	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	32715	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	68722	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	0.999651	0.0	
chr2	180104049	180104173	reg1007366.p1	5.682	+	AL832777 NM_173648	-189326	-	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	-432008	-	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	-444410	-	AY209190 TSC_hg19_v1_chr2_-_180129277 AK096232 NM_178123 BC047578	25294	-	AK057999 NM_001113398	323203	-	AK096822 NM_001113397	506657	-	AL832777|CCDC141|285025|coiled-coil domain containing 141##NM_173648|CCDC141|285025|coiled-coil domain containing 141##X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin##X98114|TTN|7273|titin##X98115|TTN|7273|titin##AY209190|SESTD1|91404|SEC14 and spectrin domains 1##AK096232|SESTD1|91404|SEC14 and spectrin domains 1##NM_178123|SESTD1|91404|SEC14 and spectrin domains 1##BC047578|SESTD1|91404|SEC14 and spectrin domains 1##AK057999|ZNF385B|151126|zinc finger protein 385B##NM_001113398|ZNF385B|151126|zinc finger protein 385B##AK096822|ZNF385B|151126|zinc finger protein 385B##NM_001113397|ZNF385B|151126|zinc finger protein 385B	0.0	0.0	
chr3	44087395	44087526	reg1007496.p1	5.682	+	TSC_hg19_v1_chr3_+_43732466 NM_016006 BC021958 AK313811 AF151816 CU692422 DQ891175 DQ894357	-355039	+	TSC_hg19_v1_chr3_-_43663467 AK131223 AK295969 AK297949 AK096302 NM_001204831 NM_001204832 NM_001204833 NM_001204834 NM_018075	-423947	-	TSC_hg19_v1_chr3_-_43663446 AL832508 AK292368 BC038855	-424022	-	AK093476 AX748152 NM_001145030	195917	+	TSC_hg19_v1_chr3_+_44379620 AK292756 NM_001029840 BC009400	292170	+	TSC_hg19_v1_chr3_+_44379944 AK056593 NM_001029839 NM_173826 BC062587	292487	+	NM_016006|ABHD5|51099|abhydrolase domain containing 5##BC021958|ABHD5|51099|abhydrolase domain containing 5##AK313811|ABHD5|51099|abhydrolase domain containing 5##AF151816|ABHD5|51099|abhydrolase domain containing 5##DQ891175|ABHD5|51099|abhydrolase domain containing 5##DQ894357|ABHD5|51099|abhydrolase domain containing 5##AK131223|ANO10|55129|anoctamin 10##AK295969|ANO10|55129|anoctamin 10##AK297949|ANO10|55129|anoctamin 10##AK096302|ANO10|55129|anoctamin 10##NM_001204831|ANO10|55129|anoctamin 10##NM_001204832|ANO10|55129|anoctamin 10##NM_001204833|ANO10|55129|anoctamin 10##NM_001204834|ANO10|55129|anoctamin 10##NM_018075|ANO10|55129|anoctamin 10##AL832508|ANO10|55129|anoctamin 10##AK292368|ANO10|55129|anoctamin 10##BC038855|ANO10|55129|anoctamin 10##AK093476|C3orf77|375337|chromosome 3 open reading frame 77##NM_001145030|C3orf77|375337|chromosome 3 open reading frame 77##AK292756|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029840|C3orf23|285343|chromosome 3 open reading frame 23##BC009400|C3orf23|285343|chromosome 3 open reading frame 23##AK056593|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029839|C3orf23|285343|chromosome 3 open reading frame 23##NM_173826|C3orf23|285343|chromosome 3 open reading frame 23##BC062587|C3orf23|285343|chromosome 3 open reading frame 23	0.0	0.0	
chr6	106094413	106094593	reg1006830.p1	5.682	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-243508	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-243545	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-243657	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	439693	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	439732	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	452301	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.0	0.0	
chr17	59628641	59628758	reg1009043.p1	5.681	+	AF188703 NM_018488 BC136403 BC144062 AB464284	-94871	+	BC142620 TSC_hg19_v1_chr17_+_59529788	-98913	+	BC046200 NM_203425	-139588	+	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	39863	-	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	312095	-	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	376643	-	AF188703|TBX4|9496|T-box 4##NM_018488|TBX4|9496|T-box 4##BC136403|TBX4|9496|T-box 4##BC144062|TBX4|9496|T-box 4##BC142620|TBX4|9496|T-box 4##BC046200|C17orf82|388407|chromosome 17 open reading frame 82##NM_203425|C17orf82|388407|chromosome 17 open reading frame 82##BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2	0.0	0.0	
chr1	15944681	15944851	reg1008257.p1	5.680	+	TSC_hg19_v1_chr1_+_15944063 CU675225	-655	+	TSC_hg19_v1_chr1_+_15944018 BC006011	-729	+	TSC_hg19_v1_chr1_+_15943952 AK293006 NM_032341	-814	+	AB528782 NM_006511	41597	+	TSC_hg19_v1_chr1_+_15990300 AF147408	45556	+	TSC_hg19_v1_chr1_+_16010816 BC040441 NM_015164	66057	+	BC006011|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##AK293006|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##NM_032341|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##NM_006511|RSC1A1|6248|regulatory solute carrier protein, family 1, member 1##BC040441|PLEKHM2|23207|pleckstrin homology domain containing, family M (with RUN domain) member 2##NM_015164|PLEKHM2|23207|pleckstrin homology domain containing, family M (with RUN domain) member 2	0.995459	0.0	denovo_WM_7:-8:0.234	denovo_WM_7:-9:0.234	denovo_WM_7:-10:0.234	denovo_WM_7:-11:0.234
chr9	71122471	71122607	reg1006342.p1	5.680	+	BC033073 NM_021965	-150725	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	-204715	+	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	-265647	+	DQ890797 DQ893952 BC029780 NM_153237 TSC_hg19_v1_chr9_-_71155800	33226	-	TSC_hg19_v1_chr9_+_71320206 AK295587 AK292734 NM_003558	197837	+	TSC_hg19_v1_chr9_+_71394980 NM_138333 BC013062 AK126379 AK304099	272412	+	BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##DQ890797|C9orf71|169693|chromosome 9 open reading frame 71##DQ893952|C9orf71|169693|chromosome 9 open reading frame 71##BC029780|C9orf71|169693|chromosome 9 open reading frame 71##NM_153237|C9orf71|169693|chromosome 9 open reading frame 71##AK295587|PIP5K1B|8395|phosphatidylinositol-4-phosphate 5-kinase, type I, beta##AK292734|PIP5K1B|8395|phosphatidylinositol-4-phosphate 5-kinase, type I, beta##NM_003558|PIP5K1B|8395|phosphatidylinositol-4-phosphate 5-kinase, type I, beta##NM_138333|FAM122A|116224|family with sequence similarity 122A##BC013062|FAM122A|116224|family with sequence similarity 122A##AK126379|FAM122A|116224|family with sequence similarity 122A	0.999812	0.335475	denovo_WM_7:-26:0.457	CTCF.p2:26:0.335	denovo_WM_7:-27:0.457
chr1	67894701	67894847	reg1008125.p1	5.679	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-121211	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-121693	+	AF461422 NM_144701	-262606	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	1249	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	1298	-	TSC_hg19_v1_chr1_-_67896086 AK312256	1311	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.0	0.0	
chr20	49067389	49067569	reg1007608.p2	5.679	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-259849	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-260098	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-260286	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	59397	+	TSC_hg19_v1_chr20_+_49126916 AK316563	59434	+	AK299830 TSC_hg19_v1_chr20_+_49126919	59440	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	0.093641	0.0	
chr2	110367302	110367482	reg1001474.p2	5.679	+	NM_001099289 DQ307286	-621329	+	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	-761645	-	TSC_hg19_v1_chr2_-_109605623 AK296936	-761773	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	4089	-	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	4333	-	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	4553	+	NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##AK296936|EDAR|10913|ectodysplasin A receptor##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57	0.0	0.0	
chr9	37303432	37303608	reg1005885.p1	5.679	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-182937	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-183012	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-183034	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	119186	+	BC010007 TSC_hg19_v1_chr9_-_37465267	161740	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	161875	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	1.74438	0.0	denovo_WM_7:31:0.469	denovo_WM_7:-89:0.704
chr3	176913180	176913324	reg1006519.p1	5.678	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-2336162	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-2754532	+	BC032555 NM_014932	-3797009	+	TSC_hg19_v1_chr3_-_176914267 BX648935	998	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	1699	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	1807	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.0	0.0	
chr4	11288229	11288367	reg1010902.p1	5.678	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-601897	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-829288	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-1169762	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	142234	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2197653	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2197677	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.128741	0.0	
chr8	8105441	8105546	reg1008884.p1	5.678	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-19351	+	AK292586 NM_001193630	-321635	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-353289	+	TSC_hg19_v1_chr8_-_8175862 AF075060	70395	-	AK122582 NM_001080826	133729	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	454205	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	0.0	0.949672	CTCF.p2:12:0.950
chr9	5832014	5832194	reg1009170.p1	5.678	+	BC036853 TSC_hg19_v1_chr9_-_5630098	-202014	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	-202977	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-321441	+	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	847	-	TSC_hg19_v1_chr9_-_5833067 AK127218	963	-	TSC_hg19_v1_chr9_-_5833082 NM_024896	974	-	BC036853|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AK127218|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##NM_024896|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.999506	0.0	denovo_WM_7:-9:0.425	denovo_WM_7:-10:0.425
chr19	16255795	16255900	reg1005177.p1	5.677	+	TSC_hg19_v1_chr19_+_16254533 AK027792 AK131222 AK300027 AK298682 AK307563 BC016826	-1345	+	TSC_hg19_v1_chr19_-_16250705 AK095221	-5143	-	AY319652 NM_032855	-11010	+	AB050868 BC069320 BC069428 BC069524 NM_054113 HQ258101 BC112200 BC113591	28463	-	TSC_hg19_v1_chr19_+_16296220 AK312058 BC000639 AL050157 NM_014077 BC017286 AF151902 AM393549 AM393669	40385	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	52903	+	AK027792|HSH2D|84941|hematopoietic SH2 domain containing##AK131222|HSH2D|84941|hematopoietic SH2 domain containing##AK300027|HSH2D|84941|hematopoietic SH2 domain containing##AK298682|HSH2D|84941|hematopoietic SH2 domain containing##AK307563|HSH2D|84941|hematopoietic SH2 domain containing##BC016826|HSH2D|84941|hematopoietic SH2 domain containing##AY319652|HSH2D|84941|hematopoietic SH2 domain containing##NM_032855|HSH2D|84941|hematopoietic SH2 domain containing##AB050868|CIB3|117286|calcium and integrin binding family member 3##BC069320|CIB3|117286|calcium and integrin binding family member 3##BC069428|CIB3|117286|calcium and integrin binding family member 3##BC069524|CIB3|117286|calcium and integrin binding family member 3##NM_054113|CIB3|117286|calcium and integrin binding family member 3##HQ258101|CIB3|117286|calcium and integrin binding family member 3##BC112200|CIB3|117286|calcium and integrin binding family member 3##BC113591|CIB3|117286|calcium and integrin binding family member 3##AK312058|FAM32A|26017|family with sequence similarity 32, member A##BC000639|FAM32A|26017|family with sequence similarity 32, member A##AL050157|FAM32A|26017|family with sequence similarity 32, member A##NM_014077|FAM32A|26017|family with sequence similarity 32, member A##BC017286|FAM32A|26017|family with sequence similarity 32, member A##AF151902|FAM32A|26017|family with sequence similarity 32, member A##AM393549|FAM32A|26017|family with sequence similarity 32, member A##AM393669|FAM32A|26017|family with sequence similarity 32, member A##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit	1.00509	0.0	denovo_WM_7:7:0.331	denovo_WM_7:8:0.331	denovo_WM_7:9:0.331
chr19	49314303	49314483	reg1003259.p2	5.677	+	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	-145	-	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-54975	+	D87935 D87936 D87937 NM_000148	-55747	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	25381	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	25530	-	BC064601 AB208908 BC025259 AY007233 BC024157 NM_001161354 NM_020904	57403	-	AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC064601|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AB208908|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC025259|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AY007233|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC024157|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_001161354|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_020904|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	0.0	0.0	
chr7	74053522	74053603	reg1006549.p1	5.677	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-185127	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-185254	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-185398	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	18459	+	TSC_hg19_v1_chr7_+_74072046 BC070484	18482	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	18560	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.997714	0.0	denovo_WM_7:12:0.981
chr19	44229526	44229652	reg1008340.p1	5.676	+	BC033853 NM_019612 BC066939	-9364	+	NM_001005376 NM_001005377 NM_002659	-55092	-	AF257789 CR456952 AB464026 DQ893017 DQ896262 M83246 TSC_hg19_v1_chr19_-_44174320 AK290774 AY029180 X51675 X74039 BC002788	-55286	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	29431	-	TSC_hg19_v1_chr19_-_44259074 AK022948	29504	-	TSC_hg19_v1_chr19_-_44259117 NM_019108	29539	-	BC033853|IRGC|56269|immunity-related GTPase family, cinema##NM_019612|IRGC|56269|immunity-related GTPase family, cinema##BC066939|IRGC|56269|immunity-related GTPase family, cinema##NM_001005376|PLAUR|5329|plasminogen activator, urokinase receptor##NM_001005377|PLAUR|5329|plasminogen activator, urokinase receptor##NM_002659|PLAUR|5329|plasminogen activator, urokinase receptor##AF257789|PLAUR|5329|plasminogen activator, urokinase receptor##CR456952|PLAUR|5329|plasminogen activator, urokinase receptor##DQ893017|PLAUR|5329|plasminogen activator, urokinase receptor##DQ896262|PLAUR|5329|plasminogen activator, urokinase receptor##M83246|PLAUR|5329|plasminogen activator, urokinase receptor##AK290774|PLAUR|5329|plasminogen activator, urokinase receptor##AY029180|PLAUR|5329|plasminogen activator, urokinase receptor##X51675|PLAUR|5329|plasminogen activator, urokinase receptor##X74039|PLAUR|5329|plasminogen activator, urokinase receptor##BC002788|PLAUR|5329|plasminogen activator, urokinase receptor##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	1.01104	0.0	
chr20	45901687	45901804	reg1009062.p2	5.676	+	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-378193	+	TSC_hg19_v1_chr20_+_45523505 BC008803	-378237	+	TSC_hg19_v1_chr20_+_45523254 BC013882 NM_005244 NM_172110	-378463	+	TSC_hg19_v1_chr20_-_45927496 BC030721	25824	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	74902	-	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	83743	-	AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC008803|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC013882|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_005244|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_172110|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8	0.0	0.967751	CTCF.p2:-17:0.968
chr22	45969589	45969671	reg1006230.p1	5.676	+	TSC_hg19_v1_chr22_+_45898762 NM_001996 NM_006485 NM_006486 NM_006487 AK075566 AK075460 AK300806 AK316291 BC022497 AF217999 AF126110 U01244 X53741 X53742 X53743 AB528743 DQ894047	-70854	+	TSC_hg19_v1_chr22_+_45809599 BC003024 BC009904 AL442116	-160002	+	TSC_hg19_v1_chr22_+_45809579 AK098586 NM_015653 AK225722	-160061	+	NM_001167621 NM_013236 AK294348 TSC_hg19_v1_chr22_+_46067713	98065	+	TSC_hg19_v1_chr22_+_46067733 AF086923 AL050282	98099	+	AK025734 TSC_hg19_v1_chr22_+_46067746 AF119662 BC007508	98126	+	NM_001996|FBLN1|2192|fibulin 1##NM_006485|FBLN1|2192|fibulin 1##NM_006486|FBLN1|2192|fibulin 1##NM_006487|FBLN1|2192|fibulin 1##AK075566|FBLN1|2192|fibulin 1##AK075460|FBLN1|2192|fibulin 1##AK300806|FBLN1|2192|fibulin 1##AK316291|FBLN1|2192|fibulin 1##BC022497|FBLN1|2192|fibulin 1##AF217999|FBLN1|2192|fibulin 1##AF126110|FBLN1|2192|fibulin 1##U01244|FBLN1|2192|fibulin 1##X53741|FBLN1|2192|fibulin 1##X53742|FBLN1|2192|fibulin 1##X53743|FBLN1|2192|fibulin 1##DQ894047|FBLN1|2192|fibulin 1##BC003024|RIBC2|26150|RIB43A domain with coiled-coils 2##BC009904|RIBC2|26150|RIB43A domain with coiled-coils 2##AL442116|RIBC2|26150|RIB43A domain with coiled-coils 2##AK098586|RIBC2|26150|RIB43A domain with coiled-coils 2##NM_015653|RIBC2|26150|RIB43A domain with coiled-coils 2##AK225722|RIBC2|26150|RIB43A domain with coiled-coils 2##NM_001167621|ATXN10|25814|ataxin 10##NM_013236|ATXN10|25814|ataxin 10##AK294348|ATXN10|25814|ataxin 10##AF086923|ATXN10|25814|ataxin 10##AL050282|ATXN10|25814|ataxin 10##AK025734|ATXN10|25814|ataxin 10##AF119662|ATXN10|25814|ataxin 10##BC007508|ATXN10|25814|ataxin 10	0.997829	0.0	
chr7	17570708	17570842	reg1006097.p1	5.676	+	TSC_hg19_v1_chr7_+_17382906 BC021696	-187869	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-232506	+	AY359065 BC058284 NM_176813	-649171	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	409274	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	409352	-	BC062797 BC005309 M57423 NM_175886	496690	-	BC021696|AHR|196|aryl hydrocarbon receptor##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1	0.0	0.292014	CTCF.p2:56:0.292
chr8	128399473	128399569	reg1006868.p2	5.676	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-828797	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-828966	-	TSC_hg19_v1_chr8_-_126963395 BX648371	-1436108	-	DQ486513 NM_001159542	28335	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	348804	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	348969	+	NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)	0.0	0.0	
chr8	145804613	145804738	reg1008706.p1	5.676	+	AK092501 AX747574 TSC_hg19_v1_chr8_-_145770830	-33919	-	BC064829 BC036712 TSC_hg19_v1_chr8_-_145754451 BC064373 NM_001001795 BC073936	-50242	-	TSC_hg19_v1_chr8_-_145752408 BC111067 NM_001024678	-52265	-	AB051475 NM_025251	34212	-	TSC_hg19_v1_chr8_-_145911232 AK296353	106552	-	TSC_hg19_v1_chr8_-_145980846 AK000435	176179	-	AK092501|ARHGAP39|80728|Rho GTPase activating protein 39##BC064829|C8orf82|414919|chromosome 8 open reading frame 82##BC064373|C8orf82|414919|chromosome 8 open reading frame 82##NM_001001795|C8orf82|414919|chromosome 8 open reading frame 82##BC073936|C8orf82|414919|chromosome 8 open reading frame 82##BC111067|LRRC24|441381|leucine rich repeat containing 24##NM_001024678|LRRC24|441381|leucine rich repeat containing 24##AB051475|ARHGAP39|80728|Rho GTPase activating protein 39##NM_025251|ARHGAP39|80728|Rho GTPase activating protein 39##AK296353|ARHGAP39|80728|Rho GTPase activating protein 39##AK000435|ZNF251|90987|zinc finger protein 251	1.152091	0.0	
chr14	62066812	62066930	reg1007889.p1	5.675	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-278344	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-318349	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-318677	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	95319	+	FJ790247 NM_001243084	97468	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	162248	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.0	0.0	
chr22	39436774	39436870	reg1007345.p1	5.675	+	AK294810 NM_001006666 NM_145298	-182	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	-19695	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	-26496	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	36365	+	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	56448	+	TSC_hg19_v1_chr22_-_39529023 BC128418	92225	-	AK294810|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_001006666|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_145298|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC128418|CBX7|23492|chromobox homolog 7	0.0	0.0	
chrX	21960058	21960176	reg1007603.p1	5.675	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-1291	+	AK091850 NM_206923	-86013	+	TSC_hg19_v1_chrX_+_21857790 AK312474 AB385581 CU690354	-102299	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	90908	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	330951	+	AY039237 NM_182699 BC067878 BC051703	1057967	+	NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AK091850|YY2|404281|YY2 transcription factor##NM_206923|YY2|404281|YY2 transcription factor##AK312474|MBTPS2|51360|membrane-bound transcription factor peptidase, site 2##NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	1.996657	0.0	
chr10	69806612	69806792	reg1003360.p1	5.674	+	AK027835 TSC_hg19_v1_chr10_-_69752431	-54294	-	AK289743 NM_001142498 TSC_hg19_v1_chr10_+_69644954	-161753	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	-161910	+	TSC_hg19_v1_chr10_-_69834956 AK292809 BC015043	28278	-	BC039600 TSC_hg19_v1_chr10_-_69835041 AK026808 AY221963 AY650032 AY650033 AY650034	28324	-	TSC_hg19_v1_chr10_-_69835055 NM_015601 NM_022079	28405	-	AK027835|HERC4|26091|hect domain and RLD 4##AK289743|SIRT1|23411|sirtuin 1##NM_001142498|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1##AK292809|HERC4|26091|hect domain and RLD 4##BC015043|HERC4|26091|hect domain and RLD 4##BC039600|HERC4|26091|hect domain and RLD 4##AK026808|HERC4|26091|hect domain and RLD 4##AY221963|HERC4|26091|hect domain and RLD 4##AY650032|HERC4|26091|hect domain and RLD 4##AY650033|HERC4|26091|hect domain and RLD 4##AY650034|HERC4|26091|hect domain and RLD 4##NM_015601|HERC4|26091|hect domain and RLD 4##NM_022079|HERC4|26091|hect domain and RLD 4	0.89842	0.0	denovo_WM_7:41:0.710
chr14	73854661	73854841	reg1007352.p2	5.674	+	NM_173462 TSC_hg19_v1_chr14_+_73704238 BC042057 BC136623 BC144315	-150500	+	AJ008005 TSC_hg19_v1_chr14_+_73603214	-251539	+	TSC_hg19_v1_chr14_+_73603184 L42110	-251571	+	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	70481	-	TSC_hg19_v1_chr14_-_73925274 BX248781	70516	-	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	70540	-	NM_173462|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC042057|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC136623|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC144315|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##AJ008005|PSEN1|5663|presenilin 1##L42110|PSEN1|5663|presenilin 1##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)	1.715939	0.0	denovo_WM_7:69:0.396
chr16	30481090	30481249	reg1006792.p2	5.674	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-23940	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-23987	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-39830	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	2831	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	2903	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	2964	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	1.02071	0.0	denovo_WM_7:25:0.841
chr1	224544404	224544553	reg1011151.p1	5.673	+	TSC_hg19_v1_chr1_-_224517875 BC012105 AK298244 AK297396 AK298826 AK293923 AK297070 BC005897 U78772 U68140 NM_001243146 NM_001243147 NM_002533 NM_206840	-26626	-	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	-173491	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	-173556	+	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	91	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	114	+	BC000573 TSC_hg19_v1_chr1_+_224544609 AK222634 BX649076 AM392966 AM393151 AM393502 DQ891901 DQ895087	133	+	BC012105|NVL|4931|nuclear VCP-like##AK298244|NVL|4931|nuclear VCP-like##AK297396|NVL|4931|nuclear VCP-like##AK298826|NVL|4931|nuclear VCP-like##AK293923|NVL|4931|nuclear VCP-like##AK297070|NVL|4931|nuclear VCP-like##BC005897|NVL|4931|nuclear VCP-like##U78772|NVL|4931|nuclear VCP-like##U68140|NVL|4931|nuclear VCP-like##NM_001243146|NVL|4931|nuclear VCP-like##NM_001243147|NVL|4931|nuclear VCP-like##NM_002533|NVL|4931|nuclear VCP-like##NM_206840|NVL|4931|nuclear VCP-like##AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC000573|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK222634|CNIH4|29097|cornichon homolog 4 (Drosophila)##BX649076|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM392966|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393151|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393502|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ891901|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ895087|CNIH4|29097|cornichon homolog 4 (Drosophila)	0.0	0.0	
chr14	77547829	77547952	reg1006699.p2	5.673	+	AK124327 TSC_hg19_v1_chr14_-_77542533	-5357	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-52830	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-53206	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	16755	+	BC117676 TSC_hg19_v1_chr14_-_77608072	60125	-	AK294840 TSC_hg19_v1_chr14_-_77608135 AK095612 NM_174976	60245	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK294840|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK095612|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_174976|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.854316	0.0	denovo_WM_7:61:0.247	denovo_WM_7:66:0.293
chr17	42848629	42848724	reg1007777.p2	5.673	+	BC144550 AB462930 AB009675 NM_002390 TSC_hg19_v1_chr17_+_42836567 AK296512	-12057	+	CU677579 AK295296 BC026999 TSC_hg19_v1_chr17_+_42786269	-62439	+	TSC_hg19_v1_chr17_+_42786060 BC033660	-62614	+	NM_005497 TSC_hg19_v1_chr17_-_42907633	58964	-	NM_001080383	59502	-	BC020667 NM_016438	76602	+	BC144550|ADAM11|4185|ADAM metallopeptidase domain 11##AB009675|ADAM11|4185|ADAM metallopeptidase domain 11##NM_002390|ADAM11|4185|ADAM metallopeptidase domain 11##AK296512|ADAM11|4185|ADAM metallopeptidase domain 11##AK295296|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##BC026999|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##BC033660|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##NM_005497|GJC1|10052|gap junction protein, gamma 1, 45kDa##NM_001080383|GJC1|10052|gap junction protein, gamma 1, 45kDa##BC020667|HIGD1B|51751|HIG1 hypoxia inducible domain family, member 1B##NM_016438|HIGD1B|51751|HIG1 hypoxia inducible domain family, member 1B	0.99612	0.0	denovo_WM_7:0:0.249	denovo_WM_7:-1:0.249	denovo_WM_7:-2:0.249	denovo_WM_7:-3:0.249
chr3	47563719	47563839	reg1006775.p1	5.673	+	DQ787088 BC000623 BC014204 TSC_hg19_v1_chr3_-_47555203 AK225721 AK000218 AK298202 NM_001031703	-8637	-	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	-46347	-	TSC_hg19_v1_chr3_-_47517349 AK300311	-46442	-	AB463496 AF059274 TSC_hg19_v1_chr3_-_47620336 NM_001206943 NM_001206944 NM_006574	56510	-	AK294621 NM_001206942 NM_001206945	57950	-	TSC_hg19_v1_chr3_-_47823302 EU832157 EU832251	259510	-	DQ787088|C3orf75|54859|chromosome 3 open reading frame 75##BC000623|C3orf75|54859|chromosome 3 open reading frame 75##BC014204|C3orf75|54859|chromosome 3 open reading frame 75##AK225721|C3orf75|54859|chromosome 3 open reading frame 75##AK000218|C3orf75|54859|chromosome 3 open reading frame 75##AK298202|C3orf75|54859|chromosome 3 open reading frame 75##NM_001031703|C3orf75|54859|chromosome 3 open reading frame 75##AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone##AK300311|SCAP|22937|SREBF chaperone##AF059274|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206943|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206944|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_006574|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##AK294621|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206942|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206945|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##EU832157|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##EU832251|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.011792	0.994882	CTCF.p2:-11:0.995
chr4	168211947	168212068	reg1007649.p1	5.673	+	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	-56267	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	-56303	-	AK295407 NM_001204353 AK294637 AK295015 AK295281 AK091078 AK295414 AK313042 TSC_hg19_v1_chr4_-_168155646	-56396	-	NM_007193 BC007320 AF196478 AJ238979 CU675613 EU176730	801762	+	TSC_hg19_v1_chr4_-_169239951 AK001649 BC038115 AK307404 NM_017631	1027898	-	TSC_hg19_v1_chr4_-_169401573 AK096369	1189573	-	AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295407|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204353|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294637|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295015|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295281|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK091078|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295414|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK313042|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_007193|ANXA10|11199|annexin A10##BC007320|ANXA10|11199|annexin A10##AF196478|ANXA10|11199|annexin A10##AJ238979|ANXA10|11199|annexin A10##EU176730|ANXA10|11199|annexin A10##AK001649|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##BC038115|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##AK307404|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##NM_017631|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##AK096369|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	0.807048	0.490436	CTCF.p2:27:0.490	denovo_WM_7:-45:0.240	denovo_WM_7:-46:0.546
chr8	118992773	118992890	reg1005672.p1	5.673	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-459789	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-459873	+	NM_001172814 NM_173851	-845495	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	131130	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	641294	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	641376	-	BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12	0.0	0.0	
chr17	73004455	73004563	reg1005838.p1	5.672	+	TSC_hg19_v1_chr17_+_72983726 AK294006 BC047534 NM_014603	-20768	+	TSC_hg19_v1_chr17_-_72968846 AK304081 BC035372 AK074401 AL137556 AK095565 BC032219 NM_030630	-35661	-	CU690082 AB527292 TSC_hg19_v1_chr17_-_72968758	-35755	-	TSC_hg19_v1_chr17_+_73008770 AK222553 AK314138 BC015335 NM_001545 X81788 CU677269 DQ890655 DQ893834 BT007111	4268	+	TSC_hg19_v1_chr17_+_73028670 AK311278 AK307083	24179	+	TSC_hg19_v1_chr17_-_73043063 AF070650 BC029392 AF061735 BC038092 AF087135 AK312230 NM_001003785 NM_006356	38549	-	AK294006|CDR2L|30850|cerebellar degeneration-related protein 2-like##BC047534|CDR2L|30850|cerebellar degeneration-related protein 2-like##NM_014603|CDR2L|30850|cerebellar degeneration-related protein 2-like##AK304081|C17orf28|283987|chromosome 17 open reading frame 28##BC035372|C17orf28|283987|chromosome 17 open reading frame 28##AK074401|C17orf28|283987|chromosome 17 open reading frame 28##AL137556|C17orf28|283987|chromosome 17 open reading frame 28##AK095565|C17orf28|283987|chromosome 17 open reading frame 28##BC032219|C17orf28|283987|chromosome 17 open reading frame 28##NM_030630|C17orf28|283987|chromosome 17 open reading frame 28##AK222553|ICT1|3396|immature colon carcinoma transcript 1##AK314138|ICT1|3396|immature colon carcinoma transcript 1##BC015335|ICT1|3396|immature colon carcinoma transcript 1##NM_001545|ICT1|3396|immature colon carcinoma transcript 1##X81788|ICT1|3396|immature colon carcinoma transcript 1##DQ890655|ICT1|3396|immature colon carcinoma transcript 1##DQ893834|ICT1|3396|immature colon carcinoma transcript 1##BT007111|ICT1|3396|immature colon carcinoma transcript 1##AK307083|KCTD2|23510|potassium channel tetramerisation domain containing 2##AF070650|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC029392|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF061735|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC038092|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF087135|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AK312230|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##NM_001003785|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##NM_006356|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d	0.999132	0.0	denovo_WM_7:-25:0.239	denovo_WM_7:-26:0.239	denovo_WM_7:-27:0.239	denovo_WM_7:-28:0.239
chr18	10530072	10530153	reg1006914.p1	5.672	+	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-4015	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-4056	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	-4084	+	NM_022068	618648	-	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	1159100	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	1221403	+	CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	1.982347	0.0	
chr19	36406428	36406608	reg1007399.p1	5.672	+	TSC_hg19_v1_chr19_-_36399212 NM_001173514 NM_001173515 NM_003332 NM_198125	-7305	-	TSC_hg19_v1_chr19_-_36399198 AF019562 BC011175 AK290385	-7326	-	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	-7368	-	BC003578 NM_024509	21503	+	TSC_hg19_v1_chr19_+_36486091 NM_001042631 BC007205 BC064605 BC069054 BC137516 BC137517	79576	+	CU690916 AK093764 AX748293 NM_001039876 BC052573 BC038360	93120	-	NM_001173514|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_001173515|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_003332|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_198125|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC003578|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_024509|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_001042631|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC007205|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC064605|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC069054|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137516|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137517|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##AK093764|C19orf46|163183|chromosome 19 open reading frame 46##NM_001039876|C19orf46|163183|chromosome 19 open reading frame 46##BC052573|C19orf46|163183|chromosome 19 open reading frame 46##BC038360|C19orf46|163183|chromosome 19 open reading frame 46	0.0	0.0	
chr3	32943695	32943801	reg1005465.p1	5.672	+	DQ232881 NM_001039111	-84239	+	TSC_hg19_v1_chr3_+_32726700 AK023227 AK022952 NM_015442 AK309670 BC006382 BC002931 BC002928 AK297085 AK298693 CU678296 CU678298 DQ892895 DQ896143 EU831494 EU831581	-216943	+	BX649189 TSC_hg19_v1_chr3_-_32612288 AK222573 AK222653 BC131620 AF078849 AK074348 AK293253 NM_016141	-331474	-	BC071751 NM_005508 AK292674	49352	+	TSC_hg19_v1_chr3_-_33138279 AK300021 AK126979 AK128242 NM_001039770 NM_001136238	194522	-	NM_001079811 TSC_hg19_v1_chr3_-_33138315	194585	-	DQ232881|TRIM71|131405|tripartite motif containing 71##NM_001039111|TRIM71|131405|tripartite motif containing 71##AK023227|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK022952|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##NM_015442|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK309670|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC006382|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002931|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002928|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK297085|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK298693|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ892895|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ896143|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831494|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831581|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BX649189|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK222573|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK222653|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##BC131620|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AF078849|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK074348|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK293253|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##NM_016141|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##BC071751|CCR4|1233|chemokine (C-C motif) receptor 4##NM_005508|CCR4|1233|chemokine (C-C motif) receptor 4##AK292674|CCR4|1233|chemokine (C-C motif) receptor 4##AK300021|GLB1|2720|galactosidase, beta 1##AK126979|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##AK128242|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##NM_001039770|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##NM_001136238|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##NM_001079811|GLB1|2720|galactosidase, beta 1	1.99172	0.0	denovo_WM_7:-7:0.741	denovo_WM_7:7:0.652	denovo_WM_7:8:0.234
chr7	102074520	102074652	reg1006999.p2	5.672	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-545	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-609	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-37744	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	30647	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	30731	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	30822	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	1.055578	0.0	
chr16	30621714	30621825	reg1008535.p1	5.671	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-113	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-24794	-	NM_001024683 NM_145271	-38042	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	40331	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	40496	+	NM_001105079	54008	+	AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##NM_001105079|FBRS|64319|fibrosin	0.0	0.0	
chr6	15428052	15428185	reg1011137.p1	5.671	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-179005	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-179217	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-181706	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	235059	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	235172	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	701184	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.982349	0.0	denovo_WM_7:3:0.928
chr6	16301784	16301941	reg1010077.p1	5.671	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-63011	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-158552	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-172425	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	459835	-	NM_001190766	800626	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	979992	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.99951	0.0	denovo_WM_7:-30:0.964
chr1	182116316	182116496	reg1005377.p2	5.670	+	BC137223 BC137224 AK128654 NM_001009992	-85609	-	NM_000721 NM_001205293 NM_001205294 L29384 L29385	-663706	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-1058541	+	TSC_hg19_v1_chr1_-_182354649 AK301600	238276	-	TSC_hg19_v1_chr1_-_182357758 BC127883	241357	-	AY486122 S70290 AB528372 DQ893278 DQ896609 EU832658 EU832735 TSC_hg19_v1_chr1_-_182357935	241497	-	BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##AK301600|GLUL|2752|glutamate-ammonia ligase##BC127883|GLUL|2752|glutamate-ammonia ligase##AY486122|GLUL|2752|glutamate-ammonia ligase##S70290|GLUL|2752|glutamate-ammonia ligase##DQ893278|GLUL|2752|glutamate-ammonia ligase##DQ896609|GLUL|2752|glutamate-ammonia ligase##EU832658|GLUL|2752|glutamate-ammonia ligase##EU832735|GLUL|2752|glutamate-ammonia ligase	0.0	0.0	
chr12	5193553	5193650	reg1005721.p2	5.670	+	M55513 NM_002234 BC096357 BC096358 BC099665 BC099666 M60451 M83254	-40482	+	TSC_hg19_v1_chr12_+_5019070 NM_000217	-174541	+	NM_002235 X17622 TSC_hg19_v1_chr12_+_4918486	-275186	+	TSC_hg19_v1_chr12_+_5541277 AK293895 NM_001102654	347675	+	BC069773 NM_002527 BC107075 AB464638 CR541906 CU687004	409737	+	FJ384095 AB593159 TSC_hg19_v1_chr12_-_6054549	860873	-	M55513|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_002234|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096357|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096358|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099665|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099666|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M60451|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M83254|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_000217|KCNA1|3736|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)##NM_002235|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##X17622|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##AK293895|NTF3|4908|neurotrophin 3##NM_001102654|NTF3|4908|neurotrophin 3##BC069773|NTF3|4908|neurotrophin 3##NM_002527|NTF3|4908|neurotrophin 3##BC107075|NTF3|4908|neurotrophin 3##CR541906|NTF3|4908|neurotrophin 3##FJ384095|ANO2|57101|anoctamin 2##AB593159|ANO2|57101|anoctamin 2	1.471637	0.049306	denovo_WM_7:-83:0.493	denovo_WM_7:-84:0.493	denovo_WM_7:-106:0.486	denovo_WM_7:-107:0.476
chr13	41006183	41006346	reg1008958.p1	5.670	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-776403	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-828902	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-828937	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	234448	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	339028	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	339068	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.0	0.0	
chr21	45723334	45723485	reg1007640.p1	5.670	+	TSC_hg19_v1_chr21_+_45719971 BC008964 BC009919 BC006422 AK091488 AX747017 BC007536 AB209127 CU675691 CU679201	-3429	+	TSC_hg19_v1_chr21_+_45719955 AK303605 AK308437	-3453	+	TSC_hg19_v1_chr21_+_45719932 NM_002626 X15573	-3482	+	TSC_hg19_v1_chr21_+_45725068 CU675401 AB528282 DQ893435 DQ896792	1724	+	BC004920 TSC_hg19_v1_chr21_+_45736378	12956	+	CU689146 Z93322 TSC_hg19_v1_chr21_-_45759141 Y11392	35721	-	BC008964|PFKL|5211|phosphofructokinase, liver##BC009919|PFKL|5211|phosphofructokinase, liver##BC006422|PFKL|5211|phosphofructokinase, liver##AK091488|PFKL|5211|phosphofructokinase, liver##BC007536|PFKL|5211|phosphofructokinase, liver##AB209127|PFKL|5211|phosphofructokinase, liver##AK303605|PFKL|5211|phosphofructokinase, liver##AK308437|PFKL|5211|phosphofructokinase, liver##NM_002626|PFKL|5211|phosphofructokinase, liver##X15573|PFKL|5211|phosphofructokinase, liver##DQ893435|PFKL|5211|phosphofructokinase, liver##DQ896792|PFKL|5211|phosphofructokinase, liver##BC004920|PFKL|5211|phosphofructokinase, liver##Z93322|C21orf2|755|chromosome 21 open reading frame 2##Y11392|C21orf2|755|chromosome 21 open reading frame 2	1.013836	0.0	denovo_WM_7:-107:0.970
chr22	17824766	17824896	reg1008799.p1	5.669	+	TSC_hg19_v1_chr22_-_17747522 AF277398	-77260	-	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-124468	-	AF190746 NM_017424	-134053	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	218388	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	286614	-	TSC_hg19_v1_chr22_-_18111509 AK312394	286675	-	AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##AK312394|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	1.929827	0.0	denovo_WM_7:-8:0.455	denovo_WM_7:-9:0.455	denovo_WM_7:-38:0.223	denovo_WM_7:-39:0.258
chr3	195910279	195910396	reg1005747.p1	5.669	+	TSC_hg19_v1_chr3_-_195808999 NM_001128148	-101321	-	TSC_hg19_v1_chr3_-_195808984 M11507	-101354	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	-101376	-	BC034801 BC022078 NM_001039617 AK122907	27944	-	AK172837 NM_152672 TSC_hg19_v1_chr3_+_195943404 AK300996	33057	+	L28957 TSC_hg19_v1_chr3_-_196014549 AK309300 AK313450	104198	-	NM_001128148|TFRC|7037|transferrin receptor (p90, CD71)##M11507|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)##BC034801|ZDHHC19|131540|zinc finger, DHHC-type containing 19##BC022078|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001039617|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK122907|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK172837|OSTalpha|200931|organic solute transporter alpha##NM_152672|OSTalpha|200931|organic solute transporter alpha##AK300996|OSTalpha|200931|organic solute transporter alpha##L28957|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309300|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK313450|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha	0.998572	0.0	denovo_WM_7:-40:0.494	denovo_WM_7:-41:0.494
chr18	38590033	38590189	reg1007742.p1	5.668	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-1209843	-	TSC_hg19_v1_chr18_-_36915657 D28405	-1674455	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-3444112	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	945088	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	945122	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	2105458	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.542279	0.0	denovo_WM_7:-18:0.385
chr20	57557080	57557225	reg1008225.p1	5.668	+	TSC_hg19_v1_chr20_+_57556329 BC014952 BX647417 AJ238379 AF161479 AB528731 AK023927 AK023310 AK001316	-803	+	TSC_hg19_v1_chr20_+_57556319 AK293410 AK304310 NM_198976	-845	+	TSC_hg19_v1_chr20_+_57470682 M77026	-86488	+	AF009923 BT019915 CU692072 AM392668 AB528116 AF073890 AF136273 BC025419 BC042168 TSC_hg19_v1_chr20_-_57582302	25075	-	TSC_hg19_v1_chr20_-_57582305 AK314931 NM_001336	25153	-	AJ292757 NM_030773	37156	+	BC014952|TH1L|51497|TH1-like (Drosophila)##BX647417|TH1L|51497|TH1-like (Drosophila)##AJ238379|TH1L|51497|TH1-like (Drosophila)##AF161479|TH1L|51497|TH1-like (Drosophila)##AK023927|TH1L|51497|TH1-like (Drosophila)##AK023310|TH1L|51497|TH1-like (Drosophila)##AK001316|TH1L|51497|TH1-like (Drosophila)##AK293410|TH1L|51497|TH1-like (Drosophila)##AK304310|TH1L|51497|TH1-like (Drosophila)##NM_198976|TH1L|51497|TH1-like (Drosophila)##M77026|GNAS|2778|GNAS complex locus##AF009923|CTSZ|1522|cathepsin Z##BT019915|CTSZ|1522|cathepsin Z##AM392668|CTSZ|1522|cathepsin Z##AF073890|CTSZ|1522|cathepsin Z##AF136273|CTSZ|1522|cathepsin Z##BC025419|CTSZ|1522|cathepsin Z##BC042168|CTSZ|1522|cathepsin Z##AK314931|CTSZ|1522|cathepsin Z##NM_001336|CTSZ|1522|cathepsin Z##AJ292757|TUBB1|81027|tubulin, beta 1 class VI##NM_030773|TUBB1|81027|tubulin, beta 1 class VI	1.994337	0.0	denovo_WM_7:51:0.395	denovo_WM_7:52:0.296	denovo_WM_7:68:0.298	denovo_WM_7:69:0.397
chr6	167504815	167504936	reg1007967.p1	5.668	+	TSC_hg19_v1_chr6_+_167412884 NM_007045 NM_194429 Y18046 AK294950 AK289846 BX647686 AK312791 BC011902 AB590215 CU680104 DQ893037 DQ896278 AJ420472	-92022	+	AK315467 TSC_hg19_v1_chr6_-_167370038 BC036282 NM_003730	-134818	-	TSC_hg19_v1_chr6_-_167370030 BC001660 BC001819 BC039713 BC051912 AJ419865 AJ419866 AJ419867 U85625	-134865	-	NM_004367	20419	+	NM_031409 U68031 U68030	31374	+	BC095537 NM_005299	66441	-	NM_007045|FGFR1OP|11116|FGFR1 oncogene partner##NM_194429|FGFR1OP|11116|FGFR1 oncogene partner##Y18046|FGFR1OP|11116|FGFR1 oncogene partner##AK294950|FGFR1OP|11116|FGFR1 oncogene partner##AK289846|FGFR1OP|11116|FGFR1 oncogene partner##AK312791|FGFR1OP|11116|FGFR1 oncogene partner##BC011902|FGFR1OP|11116|FGFR1 oncogene partner##DQ893037|FGFR1OP|11116|FGFR1 oncogene partner##DQ896278|FGFR1OP|11116|FGFR1 oncogene partner##AJ420472|FGFR1OP|11116|FGFR1 oncogene partner##AK315467|RNASET2|8635|ribonuclease T2##BC036282|RNASET2|8635|ribonuclease T2##NM_003730|RNASET2|8635|ribonuclease T2##BC001660|RNASET2|8635|ribonuclease T2##BC001819|RNASET2|8635|ribonuclease T2##BC039713|RNASET2|8635|ribonuclease T2##BC051912|RNASET2|8635|ribonuclease T2##AJ419865|RNASET2|8635|ribonuclease T2##AJ419866|RNASET2|8635|ribonuclease T2##AJ419867|RNASET2|8635|ribonuclease T2##U85625|RNASET2|8635|ribonuclease T2##NM_004367|CCR6|1235|chemokine (C-C motif) receptor 6##NM_031409|CCR6|1235|chemokine (C-C motif) receptor 6##U68031|CCR6|1235|chemokine (C-C motif) receptor 6##U68030|CCR6|1235|chemokine (C-C motif) receptor 6##BC095537|GPR31|2853|G protein-coupled receptor 31##NM_005299|GPR31|2853|G protein-coupled receptor 31	0.987325	0.0	denovo_WM_7:4:0.902
chr11	57425092	57425272	reg1007168.p2	5.667	+	BC029228 BC104781 BC112119 BC064995 AB098738 AK054775 AK124577 NM_145008	-7851	-	TSC_hg19_v1_chr11_-_57414981 BC111012	-10169	-	TSC_hg19_v1_chr11_+_57365695 GU727623 NM_001032295 BC011171 AB590526 AY732485 AY732486 BT006966 DQ891799 DQ894982	-59510	+	NM_001142597 NM_006831 TSC_hg19_v1_chr11_+_57425244 AK313007 AK300232 BC000446	48	+	TSC_hg19_v1_chr11_+_57435327 AY894889	10189	+	TSC_hg19_v1_chr11_+_57435463 NM_015457 AB051535	10293	+	BC029228|YPEL4|219539|yippee-like 4 (Drosophila)##BC104781|YPEL4|219539|yippee-like 4 (Drosophila)##BC112119|YPEL4|219539|yippee-like 4 (Drosophila)##BC064995|YPEL4|219539|yippee-like 4 (Drosophila)##AB098738|YPEL4|219539|yippee-like 4 (Drosophila)##AK054775|YPEL4|219539|yippee-like 4 (Drosophila)##AK124577|YPEL4|219539|yippee-like 4 (Drosophila)##NM_145008|YPEL4|219539|yippee-like 4 (Drosophila)##BC111012|YPEL4|219539|yippee-like 4 (Drosophila)##GU727623|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##NM_001032295|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##BC011171|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##AY732485|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##AY732486|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##BT006966|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##DQ891799|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##DQ894982|SERPING1|710|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1##NM_001142597|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##NM_006831|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK313007|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AK300232|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##BC000446|CLP1|10978|CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)##AY894889|ZDHHC5|25921|zinc finger, DHHC-type containing 5##NM_015457|ZDHHC5|25921|zinc finger, DHHC-type containing 5##AB051535|ZDHHC5|25921|zinc finger, DHHC-type containing 5	0.0	0.0	
chr1	200750051	200750196	reg1010059.p1	5.667	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-41452	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-111015	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	-111094	-	BC126386 BC126388 AK315339 NM_005298	92000	+	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	110523	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	113874	+	AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106	0.0	0.0	
chr18	47955621	47955720	reg1004917.p2	5.667	+	TSC_hg19_v1_chr18_+_47901415 NM_001039535 NM_145060 BC015706 AK313968 AK303464	-54273	+	BX647189 NM_001101654 NM_014593	-140979	-	AB031069 AF149758 AK314886 TSC_hg19_v1_chr18_-_47814205 AK294645	-141463	-	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	130827	+	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	390695	-	BC029860 NM_001127174	396072	-	NM_001039535|SKA1|220134|spindle and kinetochore associated complex subunit 1##NM_145060|SKA1|220134|spindle and kinetochore associated complex subunit 1##BC015706|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK313968|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK303464|SKA1|220134|spindle and kinetochore associated complex subunit 1##BX647189|CXXC1|30827|CXXC finger protein 1##NM_001101654|CXXC1|30827|CXXC finger protein 1##NM_014593|CXXC1|30827|CXXC finger protein 1##AB031069|CXXC1|30827|CXXC finger protein 1##AF149758|CXXC1|30827|CXXC finger protein 1##AK314886|CXXC1|30827|CXXC finger protein 1##AK294645|CXXC1|30827|CXXC finger protein 1##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro##BC029860|MRO|83876|maestro##NM_001127174|MRO|83876|maestro	0.997966	0.998022	CTCF.p2:-15:0.998	denovo_WM_7:-63:0.643
chr9	114747849	114747986	reg1009218.p1	5.667	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-88450	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-88803	+	AL833535 NM_173521	-202142	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	189603	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	347370	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	347932	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.994883	0.0	denovo_WM_7:44:0.902
chr17	27629215	27629334	reg1006916.p1	5.666	+	TSC_hg19_v1_chr17_-_27621167 AK293075 NM_020772	-8109	-	AB385448 AJ493465 BC129989 BC129990 BC108307 AK297732 TSC_hg19_v1_chr17_-_27621134 AB037742 AY232289	-8164	-	NM_005208 BC113693 BC069537 CU686900 HQ258110	-55397	+	NM_020791 NM_025142 BC133039 BC144067	88671	+	TSC_hg19_v1_chr17_-_27893539 AK056717	264270	-	TSC_hg19_v1_chr17_-_27894056 BC012476 NM_198147 AY358212	264750	-	AK293075|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020772|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AJ493465|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129989|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129990|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC108307|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK297732|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AB037742|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AY232289|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_005208|CRYBA1|1411|crystallin, beta A1##BC113693|CRYBA1|1411|crystallin, beta A1##BC069537|CRYBA1|1411|crystallin, beta A1##HQ258110|CRYBA1|1411|crystallin, beta A1##NM_020791|TAOK1|57551|TAO kinase 1##NM_025142|TAOK1|57551|TAO kinase 1##BC133039|TAOK1|57551|TAO kinase 1##BC144067|TAOK1|57551|TAO kinase 1##AK056717|ABHD15|116236|abhydrolase domain containing 15##BC012476|ABHD15|116236|abhydrolase domain containing 15##NM_198147|ABHD15|116236|abhydrolase domain containing 15##AY358212|ABHD15|116236|abhydrolase domain containing 15	1.001399	0.0	denovo_WM_7:-11:0.491	denovo_WM_7:-12:0.286	denovo_WM_7:-13:0.214
chr17	73779122	73779239	reg1006588.p1	5.666	+	BC108701 AF218029 BC001124 BC006497 BC012813 BC017558 TSC_hg19_v1_chr17_-_73775861 BX647280 AK130772 AK304607 AK312762 BX537379 NM_005324	-3339	-	L05088 TSC_hg19_v1_chr17_-_73774461	-4725	-	BT007005 CU674592 TSC_hg19_v1_chr17_-_73761274 U26401 AK316181 AK314890 AK303748 BC001166 AK130064 AK310203 NM_000154 AK303832	-17899	-	TSC_hg19_v1_chr17_+_73780918 AK307289 NM_001080419 BC046175 BC039606 BC064927 AB051540 BC053362 BC033751	1710	+	TSC_hg19_v1_chr17_+_73780952 BC080657 AB384286	1769	+	EU831417 EU831510 TSC_hg19_v1_chr17_-_73840455 AK301529 AJ578444	61269	-	BC108701|H3F3B|3021|H3 histone, family 3B (H3.3B)##AF218029|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC001124|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC006497|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC012813|H3F3B|3021|H3 histone, family 3B (H3.3B)##BC017558|H3F3B|3021|H3 histone, family 3B (H3.3B)##BX647280|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK130772|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK304607|H3F3B|3021|H3 histone, family 3B (H3.3B)##AK312762|H3F3B|3021|H3 histone, family 3B (H3.3B)##BX537379|H3F3B|3021|H3 histone, family 3B (H3.3B)##NM_005324|H3F3B|3021|H3 histone, family 3B (H3.3B)##BT007005|GALK1|2584|galactokinase 1##U26401|GALK1|2584|galactokinase 1##AK316181|GALK1|2584|galactokinase 1##AK314890|GALK1|2584|galactokinase 1##AK303748|GALK1|2584|galactokinase 1##BC001166|GALK1|2584|galactokinase 1##AK130064|GALK1|2584|galactokinase 1##AK310203|GALK1|2584|galactokinase 1##NM_000154|GALK1|2584|galactokinase 1##AK303832|GALK1|2584|galactokinase 1##AK307289|UNK|85451|unkempt homolog (Drosophila)##NM_001080419|UNK|85451|unkempt homolog (Drosophila)##BC046175|UNK|85451|unkempt homolog (Drosophila)##BC039606|UNK|85451|unkempt homolog (Drosophila)##BC064927|UNK|85451|unkempt homolog (Drosophila)##AB051540|UNK|85451|unkempt homolog (Drosophila)##BC053362|UNK|85451|unkempt homolog (Drosophila)##BC033751|UNK|85451|unkempt homolog (Drosophila)##BC080657|UNK|85451|unkempt homolog (Drosophila)##EU831417|UNC13D|201294|unc-13 homolog D (C. elegans)##EU831510|UNC13D|201294|unc-13 homolog D (C. elegans)##AK301529|UNC13D|201294|unc-13 homolog D (C. elegans)##AJ578444|UNC13D|201294|unc-13 homolog D (C. elegans)	2.165182	0.0	denovo_WM_7:-82:0.861	denovo_WM_7:-97:0.860
chr2	203076879	203076982	reg1006968.p1	5.666	+	AB017365 NM_003507 AB010881 BC015915 CU677505	-177591	+	AB053308 AX772791 NM_139158 AK131512 BX647394 BC038807 EU831752 EU831828	-405638	+	NM_001135745 NM_020919	-431036	-	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	26338	-	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	53526	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	53642	+	AB017365|FZD7|8324|frizzled family receptor 7##NM_003507|FZD7|8324|frizzled family receptor 7##AB010881|FZD7|8324|frizzled family receptor 7##BC015915|FZD7|8324|frizzled family receptor 7##AB053308|CDK15|65061|cyclin-dependent kinase 15##AX772791|CDK15|65061|cyclin-dependent kinase 15##NM_139158|CDK15|65061|cyclin-dependent kinase 15##AK131512|CDK15|65061|cyclin-dependent kinase 15##BX647394|CDK15|65061|cyclin-dependent kinase 15##BC038807|CDK15|65061|cyclin-dependent kinase 15##EU831752|CDK15|65061|cyclin-dependent kinase 15##EU831828|CDK15|65061|cyclin-dependent kinase 15##NM_001135745|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##NM_020919|ALS2|57679|amyotrophic lateral sclerosis 2 (juvenile)##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)	1.989433	0.0	
chr6	157076487	157076642	reg1009992.p1	5.666	+	AF190122 NM_015718	-1299528	-	TSC_hg19_v1_chr6_-_155635619 BC005183 BC017788 NM_016020 AF151833 BC054007 AK289484	-1440941	-	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	-1440979	-	TSC_hg19_v1_chr6_+_157099052 NM_017519 NM_020732 Y08266	22499	+	TSC_hg19_v1_chr6_+_157099206 AB587572	22661	+	TSC_hg19_v1_chr6_+_157099283 AF521671	22720	+	AF190122|NOX3|50508|NADPH oxidase 3##NM_015718|NOX3|50508|NADPH oxidase 3##BC005183|TFB1M|51106|transcription factor B1, mitochondrial##BC017788|TFB1M|51106|transcription factor B1, mitochondrial##NM_016020|TFB1M|51106|transcription factor B1, mitochondrial##AF151833|TFB1M|51106|transcription factor B1, mitochondrial##BC054007|TFB1M|51106|transcription factor B1, mitochondrial##AK289484|TFB1M|51106|transcription factor B1, mitochondrial##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial##NM_017519|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##NM_020732|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##Y08266|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)	0.780396	0.0	denovo_WM_7:23:0.204	denovo_WM_7:24:0.475
chr9	37034165	37034289	reg1005013.p2	5.665	+	TSC_hg19_v1_chr9_+_36572891 AK222811 AK296820 D79997 AK302374 AK293284 AK293423 AK300761 AK293447 AK309470 BC014039 NM_014791 AB183428 AK299164 AK300821 AB183427 AK301131	-461303	+	TSC_hg19_v1_chr9_-_36401191 NM_194330	-633052	-	TSC_hg19_v1_chr9_-_36400891 AK093480 AX748155 AF394047 NM_194328 NM_194332	-633330	-	TSC_hg19_v1_chr9_-_37034361 NM_016734	189	-	TSC_hg19_v1_chr9_+_37079908 AK091718	45679	+	TSC_hg19_v1_chr9_+_37080004 BC032471 BC033624 BC080614 BC067112	45781	+	AK222811|MELK|9833|maternal embryonic leucine zipper kinase##AK296820|MELK|9833|maternal embryonic leucine zipper kinase##D79997|MELK|9833|maternal embryonic leucine zipper kinase##AK302374|MELK|9833|maternal embryonic leucine zipper kinase##AK293284|MELK|9833|maternal embryonic leucine zipper kinase##AK293423|MELK|9833|maternal embryonic leucine zipper kinase##AK300761|MELK|9833|maternal embryonic leucine zipper kinase##AK293447|MELK|9833|maternal embryonic leucine zipper kinase##AK309470|MELK|9833|maternal embryonic leucine zipper kinase##BC014039|MELK|9833|maternal embryonic leucine zipper kinase##NM_014791|MELK|9833|maternal embryonic leucine zipper kinase##AB183428|MELK|9833|maternal embryonic leucine zipper kinase##AK299164|MELK|9833|maternal embryonic leucine zipper kinase##AK300821|MELK|9833|maternal embryonic leucine zipper kinase##AB183427|MELK|9833|maternal embryonic leucine zipper kinase##AK301131|MELK|9833|maternal embryonic leucine zipper kinase##NM_194330|RNF38|152006|ring finger protein 38##AK093480|RNF38|152006|ring finger protein 38##AX748155|RNF38|152006|ring finger protein 38##AF394047|RNF38|152006|ring finger protein 38##NM_194328|RNF38|152006|ring finger protein 38##NM_194332|RNF38|152006|ring finger protein 38##NM_016734|PAX5|5079|paired box 5##AK091718|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC032471|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC033624|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC080614|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene	0.0	0.0	
chr1	21410723	21410857	reg1006779.p2	5.664	+	BC136643 BC144335 TSC_hg19_v1_chr1_-_21377462 AK225489	-33324	-	TSC_hg19_v1_chr1_-_21377387 BC094683	-33400	-	AK304065 TSC_hg19_v1_chr1_-_21113801	-296971	-	TSC_hg19_v1_chr1_-_21415672 AK302087	4896	-	AF012072 NM_003760	27085	-	BC030578 NM_001198803	90449	-	BC136643|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC144335|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK225489|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC094683|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK304065|HP1BP3|50809|heterochromatin protein 1, binding protein 3##AK302087|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AF012072|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_003760|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC030578|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198803|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3	1.809363	0.0	denovo_WM_7:-41:0.638	denovo_WM_7:-56:0.377	denovo_WM_7:-57:0.413
chr1	54954945	54955082	reg1006741.p1	5.664	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-82929	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	-82991	-	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	-83225	-	TSC_hg19_v1_chr1_+_55007956 AK091112	52948	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	58881	+	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	134135	-	NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A	0.994929	0.0	denovo_WM_7:-13:0.332	denovo_WM_7:-14:0.332	denovo_WM_7:-15:0.332
chr19	2260628	2260786	reg1000325.p2	5.664	+	AK056978 NM_144616	-4289	-	NM_000479	-11595	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-23869	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	8813	+	TSC_hg19_v1_chr19_+_2269526 BC042364	8819	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	8835	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.950922	0.0	denovo_WM_7:83:0.261	denovo_WM_7:86:0.207
chr2	191543469	191543617	reg1008523.p1	5.664	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	-29577	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-144077	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-144116	-	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	202003	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	202014	+	TSC_hg19_v1_chr2_+_191745568 AF097495 Y08264 AF327434	202041	+	NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase##AF097495|GLS|2744|glutaminase##Y08264|GLS|2744|glutaminase##AF327434|GLS|2744|glutaminase	0.08241	0.0	
chr6	150328230	150328366	reg1004577.p1	5.664	+	AK292519 AK316582 TSC_hg19_v1_chr6_+_150285142 BC035416 NM_025218 AB052907 AF304377 AF346416 AF425265 AF346595	-43136	+	AK299895 AB052906 NM_025217 TSC_hg19_v1_chr6_+_150263162 AX772820 BC034689 AY358665 AF304378 AY026825 CU689938	-65134	+	AY172580 BC096719 BC098152 AY172579 NM_001001788 AK310157	-84098	-	BC131600 AB528849 AY039682 NM_130900	18335	-	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	61915	-	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	135943	+	AK292519|ULBP1|80329|UL16 binding protein 1##AK316582|ULBP1|80329|UL16 binding protein 1##BC035416|ULBP1|80329|UL16 binding protein 1##NM_025218|ULBP1|80329|UL16 binding protein 1##AB052907|ULBP1|80329|UL16 binding protein 1##AF304377|ULBP1|80329|UL16 binding protein 1##AF346416|ULBP1|80329|UL16 binding protein 1##AF425265|ULBP1|80329|UL16 binding protein 1##AF346595|ULBP1|80329|UL16 binding protein 1##AK299895|ULBP2|80328|UL16 binding protein 2##AB052906|ULBP2|80328|UL16 binding protein 2##NM_025217|ULBP2|80328|UL16 binding protein 2##AX772820|ULBP2|80328|UL16 binding protein 2##BC034689|ULBP2|80328|UL16 binding protein 2##AY358665|ULBP2|80328|UL16 binding protein 2##AF304378|ULBP2|80328|UL16 binding protein 2##AY026825|ULBP2|80328|UL16 binding protein 2##AY172580|RAET1G|353091|retinoic acid early transcript 1G##BC096719|RAET1G|353091|retinoic acid early transcript 1G##BC098152|RAET1G|353091|retinoic acid early transcript 1G##AY172579|RAET1G|353091|retinoic acid early transcript 1G##NM_001001788|RAET1G|353091|retinoic acid early transcript 1G##AK310157|RAET1G|353091|retinoic acid early transcript 1G##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C	0.0	0.0	
chr11	73428026	73428183	reg1008780.p1	5.663	+	AK290109 NM_001130036	-68370	+	NM_001130034 NM_001130035 BC008075 AB209716 AK289620 TSC_hg19_v1_chr11_+_73358695 AK296033 AK301299 AF093249 AF100612 AK289909 AK311158	-69441	+	AF101054 NM_001130033 NM_021200 U89715	-70882	+	AK301534 NM_001243719	43032	-	BC034996 TSC_hg19_v1_chr11_-_73472120 BC003617 AK309311 AK223551 AK289748 BC096818 AK057157 BC068486 NM_001243718 NM_002869 NM_198896	44043	-	AF161408 TSC_hg19_v1_chr11_+_73498935 AK297746 NM_016055 BC009764 AK309219 AK310005	70822	+	AK290109|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130036|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130034|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130035|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##BC008075|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AB209716|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289620|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK296033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK301299|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF093249|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF100612|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289909|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK311158|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF101054|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_021200|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##U89715|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK301534|RAB6A|5870|RAB6A, member RAS oncogene family##NM_001243719|RAB6A|5870|RAB6A, member RAS oncogene family##BC034996|RAB6A|5870|RAB6A, member RAS oncogene family##BC003617|RAB6A|5870|RAB6A, member RAS oncogene family##AK309311|RAB6A|5870|RAB6A, member RAS oncogene family##AK223551|RAB6A|5870|RAB6A, member RAS oncogene family##AK289748|RAB6A|5870|RAB6A, member RAS oncogene family##BC096818|RAB6A|5870|RAB6A, member RAS oncogene family##AK057157|RAB6A|5870|RAB6A, member RAS oncogene family##BC068486|RAB6A|5870|RAB6A, member RAS oncogene family##NM_001243718|RAB6A|5870|RAB6A, member RAS oncogene family##NM_002869|RAB6A|5870|RAB6A, member RAS oncogene family##NM_198896|RAB6A|5870|RAB6A, member RAS oncogene family##AF161408|MRPL48|51642|mitochondrial ribosomal protein L48##AK297746|MRPL48|51642|mitochondrial ribosomal protein L48##NM_016055|MRPL48|51642|mitochondrial ribosomal protein L48##BC009764|MRPL48|51642|mitochondrial ribosomal protein L48##AK309219|MRPL48|51642|mitochondrial ribosomal protein L48##AK310005|MRPL48|51642|mitochondrial ribosomal protein L48	0.0	0.0	
chrX	142070635	142070799	reg1009044.p2	5.663	+	AF151378 AF196482 AF116194 AK313591 BC013318 NM_016249	-777652	-	NM_005462 AF056334 BC025969	-1079046	+	NM_177456	-1088266	+	BC130503 BC130505 NM_001009613 HQ258561 DQ336126 DQ336127	43034	+	DQ336128 DQ336129 BC062750 NM_001009609	534545	-	AK315044 NM_001184750	651601	-	AF151378|MAGEC2|51438|melanoma antigen family C, 2##AF196482|MAGEC2|51438|melanoma antigen family C, 2##AF116194|MAGEC2|51438|melanoma antigen family C, 2##AK313591|MAGEC2|51438|melanoma antigen family C, 2##BC013318|MAGEC2|51438|melanoma antigen family C, 2##NM_016249|MAGEC2|51438|melanoma antigen family C, 2##NM_005462|MAGEC1|9947|melanoma antigen family C, 1##AF056334|MAGEC1|9947|melanoma antigen family C, 1##BC025969|MAGEC1|9947|melanoma antigen family C, 1##NM_177456|MAGEC3|139081|melanoma antigen family C, 3##BC130503|SPANXN4|441525|SPANX family, member N4##BC130505|SPANXN4|441525|SPANX family, member N4##NM_001009613|SPANXN4|441525|SPANX family, member N4##HQ258561|SPANXN4|441525|SPANX family, member N4##DQ336126|SPANXN4|441525|SPANX family, member N4##DQ336127|SPANXN4|441525|SPANX family, member N4##DQ336128|SPANXN3|139067|SPANX family, member N3##DQ336129|SPANXN3|139067|SPANX family, member N3##BC062750|SPANXN3|139067|SPANX family, member N3##NM_001009609|SPANXN3|139067|SPANX family, member N3##AK315044|SLITRK4|139065|SLIT and NTRK-like family, member 4##NM_001184750|SLITRK4|139065|SLIT and NTRK-like family, member 4	0.974339	0.0	denovo_WM_7:2:0.392	denovo_WM_7:3:0.582
chr1	179679188	179679326	reg1008017.p1	5.662	+	AK092142 AX747378 NM_001199092	-103896	+	NM_001199089 AK127370 BC130532 BC144058	-118251	+	AK126889 NM_001199091 NM_001199085 NM_173533	-118506	+	AY902195 BC009382 NM_173509 TSC_hg19_v1_chr1_+_179712397	33094	+	TSC_hg19_v1_chr1_+_179712425 AK310711	33167	+	AK313887 TSC_hg19_v1_chr1_+_179712524	33259	+	AK092142|TDRD5|163589|tudor domain containing 5##NM_001199092|TDRD5|163589|tudor domain containing 5##NM_001199089|TDRD5|163589|tudor domain containing 5##AK127370|TDRD5|163589|tudor domain containing 5##BC130532|TDRD5|163589|tudor domain containing 5##BC144058|TDRD5|163589|tudor domain containing 5##AK126889|TDRD5|163589|tudor domain containing 5##NM_001199091|TDRD5|163589|tudor domain containing 5##NM_001199085|TDRD5|163589|tudor domain containing 5##NM_173533|TDRD5|163589|tudor domain containing 5##AY902195|FAM163A|148753|family with sequence similarity 163, member A##BC009382|FAM163A|148753|family with sequence similarity 163, member A##NM_173509|FAM163A|148753|family with sequence similarity 163, member A##AK310711|FAM163A|148753|family with sequence similarity 163, member A##AK313887|FAM163A|148753|family with sequence similarity 163, member A	0.910401	0.0	denovo_WM_7:21:0.670
chr21	37682438	37682601	reg1002876.p1	5.662	+	AJ237839 NM_005128	-145681	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	-153888	-	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	-175170	+	TSC_hg19_v1_chr21_+_37692548 BC058002 NM_015358 AK295133 BC007311 D50926 BC094779 BC132731 BC144116 AK292957 AB489143	10000	+	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	75171	+	BC012126 NM_012130 AY355349	156212	-	AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##BC058002|MORC3|23515|MORC family CW-type zinc finger 3##NM_015358|MORC3|23515|MORC family CW-type zinc finger 3##AK295133|MORC3|23515|MORC family CW-type zinc finger 3##BC007311|MORC3|23515|MORC family CW-type zinc finger 3##D50926|MORC3|23515|MORC family CW-type zinc finger 3##BC094779|MORC3|23515|MORC family CW-type zinc finger 3##BC132731|MORC3|23515|MORC family CW-type zinc finger 3##BC144116|MORC3|23515|MORC family CW-type zinc finger 3##AK292957|MORC3|23515|MORC family CW-type zinc finger 3##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14	0.0	0.0	
chr5	176600364	176600509	reg1008027.p1	5.662	+	TSC_hg19_v1_chr5_+_176562084 AF322907 AY049721 BC144629 BC150628 BC139789	-38324	+	TSC_hg19_v1_chr5_+_176561166 AF380302	-39249	+	TSC_hg19_v1_chr5_+_176560968 AF395588	-39483	+	TSC_hg19_v1_chr5_-_176730717 BC010006 AK021761 AK308155 BC021263 BC015534 NM_001031677 NM_130781	130265	-	TSC_hg19_v1_chr5_+_176730807 BC007268 BC018904 AK312170 AF151864	130359	+	TSC_hg19_v1_chr5_+_176730812 BC000007 BC008866 AF087858 BC013733 AF112203 AF111112 AF153607 BC013748 NM_013237 BC008307 AF201925 CU680664 DQ891042 DQ894221 U94779	130503	+	AF322907|NSD1|64324|nuclear receptor binding SET domain protein 1##AY049721|NSD1|64324|nuclear receptor binding SET domain protein 1##BC144629|NSD1|64324|nuclear receptor binding SET domain protein 1##BC150628|NSD1|64324|nuclear receptor binding SET domain protein 1##BC139789|NSD1|64324|nuclear receptor binding SET domain protein 1##AF380302|NSD1|64324|nuclear receptor binding SET domain protein 1##AF395588|NSD1|64324|nuclear receptor binding SET domain protein 1##BC010006|RAB24|53917|RAB24, member RAS oncogene family##AK021761|RAB24|53917|RAB24, member RAS oncogene family##AK308155|RAB24|53917|RAB24, member RAS oncogene family##BC021263|RAB24|53917|RAB24, member RAS oncogene family##BC015534|RAB24|53917|RAB24, member RAS oncogene family##NM_001031677|RAB24|53917|RAB24, member RAS oncogene family##NM_130781|RAB24|53917|RAB24, member RAS oncogene family##BC007268|PRELID1|27166|PRELI domain containing 1##BC018904|PRELID1|27166|PRELI domain containing 1##AK312170|PRELID1|27166|PRELI domain containing 1##AF151864|PRELID1|27166|PRELI domain containing 1##BC000007|PRELID1|27166|PRELI domain containing 1##BC008866|PRELID1|27166|PRELI domain containing 1##AF087858|PRELID1|27166|PRELI domain containing 1##BC013733|PRELID1|27166|PRELI domain containing 1##AF112203|PRELID1|27166|PRELI domain containing 1##AF111112|PRELID1|27166|PRELI domain containing 1##AF153607|PRELID1|27166|PRELI domain containing 1##BC013748|PRELID1|27166|PRELI domain containing 1##NM_013237|PRELID1|27166|PRELI domain containing 1##BC008307|PRELID1|27166|PRELI domain containing 1##AF201925|PRELID1|27166|PRELI domain containing 1##DQ891042|PRELID1|27166|PRELI domain containing 1##DQ894221|PRELID1|27166|PRELI domain containing 1	0.999687	0.0	
chr16	23854769	23854835	reg1008033.p1	5.661	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-7296	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-7407	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-7470	+	BC037899 NM_006539 AK095553	412072	+	AK055453 TSC_hg19_v1_chr16_+_24267474	412672	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	412896	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	0.993376	0.0	denovo_WM_7:-37:0.583	denovo_WM_7:-38:0.314
chr20	48421820	48422000	reg1004507.p2	5.661	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-91444	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-91554	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-91680	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	7398	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	7508	+	AK289644 NM_001135773	108365	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	0.0	0.0	
chr6	52169500	52169665	reg1009086.p1	5.661	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-20003	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-20062	-	AB528319 DQ893654 DQ895840 TSC_hg19_v1_chr6_-_52149506 AK312928 AK300754 X62153 AY032603	-20091	-	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	57375	+	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	115496	+	AK297632 NM_001172420	116222	+	D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##DQ893654|MCM3|4172|minichromosome maintenance complex component 3##DQ895840|MCM3|4172|minichromosome maintenance complex component 3##AK312928|MCM3|4172|minichromosome maintenance complex component 3##AK300754|MCM3|4172|minichromosome maintenance complex component 3##X62153|MCM3|4172|minichromosome maintenance complex component 3##AY032603|MCM3|4172|minichromosome maintenance complex component 3##NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1	1.828747	0.0	denovo_WM_7:-52:0.895	denovo_WM_7:96:0.303	denovo_WM_7:107:0.304
chr7	138780087	138780240	reg1009199.p2	5.661	+	TSC_hg19_v1_chr7_-_138720787 BC008842 NM_080660 BC020784	-59329	-	TSC_hg19_v1_chr7_-_138666114 AM989468 AM989469 AM989472 AM989473 AM989474 NM_001164665 NM_020910	-113930	-	BC109304 BC109305 AF245517 AK292945 NM_020632 NM_130840	-297269	-	AK055851 BX647974 TSC_hg19_v1_chr7_-_138794101	13938	-	TSC_hg19_v1_chr7_-_138794133 AK292811	14010	-	BC025308 BC033105 BC040956 NM_020119 NM_024625 BX571742 TSC_hg19_v1_chr7_-_138794467	14267	-	BC008842|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##NM_080660|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##BC020784|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##AM989468|KIAA1549|57670|KIAA1549##AM989469|KIAA1549|57670|KIAA1549##NM_001164665|KIAA1549|57670|KIAA1549##NM_020910|KIAA1549|57670|KIAA1549##BC109304|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##BC109305|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AF245517|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK292945|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_020632|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_130840|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK055851|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX647974|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##AK292811|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC025308|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC033105|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC040956|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_020119|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_024625|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX571742|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1	0.0	0.0	
chr1	40651487	40651561	reg1006162.p1	5.660	+	TSC_hg19_v1_chr1_+_40627068 HQ258544	-24448	+	TSC_hg19_v1_chr1_+_40627058 AK307662 U22377 X58480	-24467	+	TSC_hg19_v1_chr1_+_40627044 BC113666 NM_012421	-24485	+	NM_001008740 BC108666	62081	+	BC012000 TSC_hg19_v1_chr1_-_40723621 AK054902	72091	-	TSC_hg19_v1_chr1_+_40723742 NM_005857 AB016068 BC037283	72252	+	HQ258544|RLF|6018|rearranged L-myc fusion##AK307662|RLF|6018|rearranged L-myc fusion##U22377|RLF|6018|rearranged L-myc fusion##BC113666|RLF|6018|rearranged L-myc fusion##NM_012421|RLF|6018|rearranged L-myc fusion##NM_001008740|TMCO2|127391|transmembrane and coiled-coil domains 2##BC108666|TMCO2|127391|transmembrane and coiled-coil domains 2##NM_005857|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##AB016068|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##BC037283|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)	1.995195	0.0	denovo_WM_7:-17:0.841
chr3	47855249	47855379	reg1002833.p1	5.660	+	AK096791 TSC_hg19_v1_chr3_+_47844627 BC020126 BC038417 BC015029 AB020697 BC063510	-10658	+	BC047335 NM_014966 NM_138615 TSC_hg19_v1_chr3_+_47844624 BC028405 AK291266	-10803	+	TSC_hg19_v1_chr3_-_47823419 AK302541	-31807	-	TSC_hg19_v1_chr3_+_47866475 AK002076	11174	+	TSC_hg19_v1_chr3_-_47934000 AK054696	78716	-	TSC_hg19_v1_chr3_-_47957477 BX649077	102229	-	AK096791|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC020126|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC038417|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC015029|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AB020697|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC063510|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC047335|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##NM_014966|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##NM_138615|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##BC028405|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK291266|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK302541|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##AK002076|DHX30|22907|DEAH (Asp-Glu-Ala-His) box polypeptide 30##AK054696|MAP4|4134|microtubule-associated protein 4	0.999587	0.0	
chrX	102118756	102118897	reg1010648.p1	5.660	+	TSC_hg19_v1_chrX_+_102024107 BC040959	-94744	+	NM_001142529 NM_001142530	-117920	+	NM_001142524 NM_001142525 NM_001142526 NM_001142527 NM_001142528 NM_030639 BC041409	-143179	+	BC101169 BC101170 BC101171 BC101172 NM_001031834	73373	+	AF220189 AY833561 TSC_hg19_v1_chrX_-_102319085	200256	-	TSC_hg19_v1_chrX_-_102319100 AF237783 AK290958 NM_018476	200305	-	BC040959|LOC100287765|100287765|uncharacterized LOC100287765##NM_001142529|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_001142530|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_001142524|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_001142525|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_001142526|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_001142527|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_001142528|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##NM_030639|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##BC041409|BHLHB9|80823|basic helix-loop-helix domain containing, class B, 9##BC101169|RAB40AL|282808|RAB40A, member RAS oncogene family-like##BC101170|RAB40AL|282808|RAB40A, member RAS oncogene family-like##BC101171|RAB40AL|282808|RAB40A, member RAS oncogene family-like##BC101172|RAB40AL|282808|RAB40A, member RAS oncogene family-like##NM_001031834|RAB40AL|282808|RAB40A, member RAS oncogene family-like##AF220189|BEX1|55859|brain expressed, X-linked 1##AY833561|BEX1|55859|brain expressed, X-linked 1##AF237783|BEX1|55859|brain expressed, X-linked 1##AK290958|BEX1|55859|brain expressed, X-linked 1##NM_018476|BEX1|55859|brain expressed, X-linked 1	0.04524	0.711129	CTCF.p2:22:0.711
chr16	21616477	21616647	reg1007362.p2	5.659	+	AF151839 TSC_hg19_v1_chr16_+_21611174	-5408	+	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	-5672	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-84810	-	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	47358	-	AJ223183 TSC_hg19_v1_chr16_-_21663991 NM_005849	47414	-	BC129993 NM_144672 BC129992	73273	+	AF151839|METTL9|51108|methyltransferase like 9##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6##AJ223183|IGSF6|10261|immunoglobulin superfamily, member 6##NM_005849|IGSF6|10261|immunoglobulin superfamily, member 6##BC129993|OTOA|146183|otoancorin##NM_144672|OTOA|146183|otoancorin##BC129992|OTOA|146183|otoancorin	1.983627	0.0	
chr15	63506293	63506473	reg1006690.p1	5.658	+	TSC_hg19_v1_chr15_+_63481804 AK001111 AK095444 AK297598 AL833365 BC020654 AB464123 CU676608	-24578	+	TSC_hg19_v1_chr15_+_63481724 NM_016530 AB038995	-24654	+	BC031307 TSC_hg19_v1_chr15_-_63449677 AF070668 BC003667 BC047648 AK024591 NM_015920	-56774	-	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	63430	+	BT006656 DQ893188 DQ896511 EU831616 EU831623 EU831703 EU831708 AF051882 BC000278 AF037335 BC011691 TSC_hg19_v1_chr15_-_63674046 AK096845 BC023981	167609	-	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	167692	-	AK001111|RAB8B|51762|RAB8B, member RAS oncogene family##AK095444|RAB8B|51762|RAB8B, member RAS oncogene family##AK297598|RAB8B|51762|RAB8B, member RAS oncogene family##AL833365|RAB8B|51762|RAB8B, member RAS oncogene family##BC020654|RAB8B|51762|RAB8B, member RAS oncogene family##NM_016530|RAB8B|51762|RAB8B, member RAS oncogene family##AB038995|RAB8B|51762|RAB8B, member RAS oncogene family##BC031307|RPS27L|51065|ribosomal protein S27-like##AF070668|RPS27L|51065|ribosomal protein S27-like##BC003667|RPS27L|51065|ribosomal protein S27-like##BC047648|RPS27L|51065|ribosomal protein S27-like##AK024591|RPS27L|51065|ribosomal protein S27-like##NM_015920|RPS27L|51065|ribosomal protein S27-like##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BT006656|CA12|771|carbonic anhydrase XII##DQ893188|CA12|771|carbonic anhydrase XII##DQ896511|CA12|771|carbonic anhydrase XII##EU831616|CA12|771|carbonic anhydrase XII##EU831623|CA12|771|carbonic anhydrase XII##EU831703|CA12|771|carbonic anhydrase XII##EU831708|CA12|771|carbonic anhydrase XII##AF051882|CA12|771|carbonic anhydrase XII##BC000278|CA12|771|carbonic anhydrase XII##AF037335|CA12|771|carbonic anhydrase XII##BC011691|CA12|771|carbonic anhydrase XII##AK096845|CA12|771|carbonic anhydrase XII##BC023981|CA12|771|carbonic anhydrase XII##AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII	0.214273	0.0	
chr2	225849482	225849592	reg1006515.p1	5.658	+	TSC_hg19_v1_chr2_-_225811768 EU236710	-37783	-	TSC_hg19_v1_chr2_-_225450116 NM_003590	-399417	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-399462	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	57811	-	NM_020864 BC131727 AB040919	416108	+	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	1813942	-	EU236710|DOCK10|55619|dedicator of cytokinesis 10##NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1	0.999297	0.0	
chr5	89825951	89826083	reg1004880.p2	5.658	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-651	-	NM_006467 AK295434 U93868	-55315	+	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	-55439	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	28597	+	AK091866 TSC_hg19_v1_chr5_-_90610220	784228	-	TSC_hg19_v1_chr5_+_90676181 BC043415	850145	+	BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716	0.0	0.0	
chr10	12111452	12111527	reg1000982.p2	5.657	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	-482	+	TSC_hg19_v1_chr10_+_12110952 NM_018706	-553	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-26407	-	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	60164	+	TSC_hg19_v1_chr10_-_12237861 AF218818 AK291131 AF155832 AF161464	126377	-	TSC_hg19_v1_chr10_+_12237965 NM_006023 D14878 AK225634	126472	+	BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF218818|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AK291131|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF155832|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF161464|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##NM_006023|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##D14878|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK225634|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)	1.408845	0.0	
chr1	22352675	22352851	reg1012854.p2	5.657	+	TSC_hg19_v1_chr1_+_22352003 AF161506 BC016053	-751	+	BC005918 BC015103 D00306 NM_005747 BC007028 AK225620 AK308514 BC008383 CU675183 CU678941 DQ893182 DQ896490	-24606	+	NM_007352 AK092382 AK308518 AX747509 BC005216 M18692 AK315798 AK308510 M16630	-49284	+	NM_001039802 NM_001791 NM_044472 TSC_hg19_v1_chr1_+_22379201 BC018266 AL121734 AL121735 BC002711 AL121736 AK311375 AK316449 AK303994 AK297465 M57298	26407	+	TSC_hg19_v1_chr1_+_22379812 AL121737	27042	+	AY009398 BT020125 AB590593 AB061675 AY358947 AF316543 NM_030761 BC057781	116748	-	AF161506|LINC00339|29092|long intergenic non-protein coding RNA 339##BC016053|LINC00339|29092|long intergenic non-protein coding RNA 339##BC005918|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC015103|CELA3A|10136|chymotrypsin-like elastase family, member 3A##D00306|CELA3A|10136|chymotrypsin-like elastase family, member 3A##NM_005747|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC007028|CELA3A|10136|chymotrypsin-like elastase family, member 3A##AK225620|CELA3A|10136|chymotrypsin-like elastase family, member 3A##AK308514|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC008383|CELA3A|10136|chymotrypsin-like elastase family, member 3A##DQ893182|CELA3A|10136|chymotrypsin-like elastase family, member 3A##DQ896490|CELA3A|10136|chymotrypsin-like elastase family, member 3A##NM_007352|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK092382|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK308518|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC005216|CELA3B|23436|chymotrypsin-like elastase family, member 3B##M18692|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK315798|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK308510|CELA3A|10136|chymotrypsin-like elastase family, member 3A##M16630|CELA3B|23436|chymotrypsin-like elastase family, member 3B##NM_001039802|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_001791|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_044472|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC018266|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121734|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121735|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC002711|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121736|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK311375|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK316449|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK303994|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK297465|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##M57298|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121737|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AY009398|WNT4|54361|wingless-type MMTV integration site family, member 4##BT020125|WNT4|54361|wingless-type MMTV integration site family, member 4##AB061675|WNT4|54361|wingless-type MMTV integration site family, member 4##AY358947|WNT4|54361|wingless-type MMTV integration site family, member 4##AF316543|WNT4|54361|wingless-type MMTV integration site family, member 4##NM_030761|WNT4|54361|wingless-type MMTV integration site family, member 4##BC057781|WNT4|54361|wingless-type MMTV integration site family, member 4	0.960544	0.0	denovo_WM_7:12:0.648
chr12	6643162	6643288	reg1000767.p1	5.657	+	TSC_hg19_v1_chr12_+_6603297 BC028182 AK022511 NM_014865	-39931	+	AK125155 AK303310 TSC_hg19_v1_chr12_+_6603270 AK128354	-39959	+	TSC_hg19_v1_chr12_+_6602542 D63880 BC016913	-40676	+	TSC_hg19_v1_chr12_+_6643683 AF261085 NM_002046 AK308198 AK299448 BC009081 BC013310 M33197 BC025925 BC029618 X53778 AB062273 AY007133 BC004109 BC083511 BC029340 BC001601 BC020308 BC026907	437	+	TSC_hg19_v1_chr12_+_6643982 M17851 AY633612 BC023632 DQ891557 DQ894744 AB463693 CU679249 J02642 BT006893 CR407671	757	+	M36164 TSC_hg19_v1_chr12_+_6647482	4192	+	BC028182|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK022511|NCAPD2|9918|non-SMC condensin I complex, subunit D2##NM_014865|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK125155|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK303310|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AK128354|NCAPD2|9918|non-SMC condensin I complex, subunit D2##D63880|NCAPD2|9918|non-SMC condensin I complex, subunit D2##BC016913|NCAPD2|9918|non-SMC condensin I complex, subunit D2##AF261085|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##NM_002046|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AK308198|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AK299448|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC009081|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC013310|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M33197|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC025925|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC029618|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##X53778|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AB062273|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY007133|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC004109|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC083511|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC029340|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC001601|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC020308|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC026907|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M17851|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY633612|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC023632|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ891557|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ894744|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##J02642|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BT006893|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##CR407671|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M36164|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase	0.0	0.0	
chr3	4626197	4626377	reg1009179.p1	5.657	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-91091	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-91159	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-91256	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	394829	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	394894	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	395067	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.988283	0.0	denovo_WM_7:-35:0.897
chr6	27096383	27096506	reg1008883.p2	5.657	+	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	-436492	-	TSC_hg19_v1_chr6_+_26597203 NM_013375 BC066313 BC048812 AB027258 AB463399 CU688138 CU690582 EU446795	-499237	+	TSC_hg19_v1_chr6_+_26538630 NM_006353 AK311841 BC001282	-557814	+	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	4121	-	TSC_hg19_v1_chr6_+_27100821 AK312124 NM_021064 L19778 BC067782 BC016677 AB590259 DQ891024 DQ894204 DQ894286	4373	+	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	10629	+	NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322##NM_013375|ABT1|29777|activator of basal transcription 1##BC066313|ABT1|29777|activator of basal transcription 1##BC048812|ABT1|29777|activator of basal transcription 1##AB027258|ABT1|29777|activator of basal transcription 1##EU446795|ABT1|29777|activator of basal transcription 1##NM_006353|HMGN4|10473|high mobility group nucleosomal binding domain 4##AK311841|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC001282|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj##AK312124|HIST1H2AG|8969|histone cluster 1, H2ag##NM_021064|HIST1H2AG|8969|histone cluster 1, H2ag##L19778|HIST1H2AG|8969|histone cluster 1, H2ag##BC067782|HIST1H2AG|8969|histone cluster 1, H2ag##BC016677|HIST1H2AG|8969|histone cluster 1, H2ag##DQ891024|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894204|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894286|HIST1H2AG|8969|histone cluster 1, H2ag##BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i	0.968987	0.0	denovo_WM_7:10:0.707
chr9	2466051	2466212	reg1010279.p1	5.657	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-450835	+	AF130729 NM_181872	-1415522	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-1415761	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	155676	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	155943	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	155981	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	0.991565	0.0	denovo_WM_7:-7:0.864
chr6	137583109	137583246	reg1009394.p1	5.656	+	TSC_hg19_v1_chr6_-_137540556 NM_000416	-42619	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-42632	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	-42665	-	BC051352 AK096362 NM_175747	232348	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	605360	+	TSC_hg19_v1_chr6_-_138189314 AK124173	606173	-	NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3	0.137172	0.0	
chr1	220262480	220262586	reg1000450.p1	5.655	+	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-42597	-	TSC_hg19_v1_chr1_-_220219873 AK296755 BC067841	-42670	-	TSC_hg19_v1_chr1_-_220219848 BC058921 CR933648	-42691	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	588	-	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	641	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	4919	+	BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AK296755|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC067841|EPRS|2058|glutamyl-prolyl-tRNA synthetase##BC058921|EPRS|2058|glutamyl-prolyl-tRNA synthetase##CR933648|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial	1.424258	0.0	denovo_WM_7:-25:0.204
chr7	74988595	74988697	reg1000363.p2	5.655	+	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	-76	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-121126	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-480272	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	36319	+	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	51008	+	AB354586 TSC_hg19_v1_chr7_-_75072021	83365	-	AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AB354586|POM121C|100101267|POM121 membrane glycoprotein C	0.0	0.0	
chr10	32479928	32480037	reg1007380.p1	5.654	+	TSC_hg19_v1_chr10_-_32345341 NM_004521	-134622	-	TSC_hg19_v1_chr10_-_32345335 BC080604 BC010885 BC111042 AK289413 AK299542 BC065267 AK307502	-134668	-	BC126279 BC126281 TSC_hg19_v1_chr10_-_32345152 X65873	-134814	-	CU691366 TSC_hg19_v1_chr10_-_32636082 AK092304 AX747467 AK309822	155980	-	TSC_hg19_v1_chr10_-_32636116 AF277374 FJ230887 NM_025209	156126	-	TSC_hg19_v1_chr10_-_32636137 BC036529 CR749375	156167	-	NM_004521|KIF5B|3799|kinesin family member 5B##BC080604|KIF5B|3799|kinesin family member 5B##BC010885|KIF5B|3799|kinesin family member 5B##BC111042|KIF5B|3799|kinesin family member 5B##AK289413|KIF5B|3799|kinesin family member 5B##AK299542|KIF5B|3799|kinesin family member 5B##BC065267|KIF5B|3799|kinesin family member 5B##AK307502|KIF5B|3799|kinesin family member 5B##BC126279|KIF5B|3799|kinesin family member 5B##BC126281|KIF5B|3799|kinesin family member 5B##X65873|KIF5B|3799|kinesin family member 5B##AK092304|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309822|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF277374|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_025209|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##BC036529|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##CR749375|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)	0.917644	0.652938	denovo_WM_7:-21:0.765	CTCF.p2:22:0.653
chr1	160605252	160605384	reg1006241.p2	5.654	+	AK313496 TSC_hg19_v1_chr1_-_160549273 AF054815 AF054816 AF054817 AF054818 U96627 Y12632 NM_001184879 NM_001184881 NM_001184882 NM_003874	-56030	-	AB590277 CR541847 CU676492 DQ891708 DQ894872 BC020063 U82988 TSC_hg19_v1_chr1_-_160549268 AJ223324 AK296290 CR933666	-56071	-	AB590474 AJ306388 AJ277141 AK313549 BC113893 BC114495 AK310085 AL832854 BC090928 AK300013 AK301026 AY358159 TSC_hg19_v1_chr1_-_160493043 AK303990 AK125624 NM_001184714 NM_001184715 NM_001184716 NM_052931	-112289	-	AK314244 NM_003037 BC012602	11745	-	BT019813 CR457012 AB590257 CU688852 DQ896316 EU176422 M59904 M37766 BC016182 NM_001778 X06341 BC030224 AK225636 AK310624 AK310744	76268	-	AK298548 AK298499 AY358512 AL834424 AK301438 TSC_hg19_v1_chr1_+_160709067 AK290706 AK292097 AK292148 AK301137 AK301432 AF390894 AB027233 NM_021181 AF291815 AJ271869 AJ276429 BC027867 AB590100 AM392941 AM393275 EU832487 EU832567	103746	+	AK313496|CD84|8832|CD84 molecule##AF054815|CD84|8832|CD84 molecule##AF054816|CD84|8832|CD84 molecule##AF054817|CD84|8832|CD84 molecule##AF054818|CD84|8832|CD84 molecule##U96627|CD84|8832|CD84 molecule##Y12632|CD84|8832|CD84 molecule##NM_001184879|CD84|8832|CD84 molecule##NM_001184881|CD84|8832|CD84 molecule##NM_001184882|CD84|8832|CD84 molecule##NM_003874|CD84|8832|CD84 molecule##CR541847|CD84|8832|CD84 molecule##DQ891708|CD84|8832|CD84 molecule##DQ894872|CD84|8832|CD84 molecule##BC020063|CD84|8832|CD84 molecule##U82988|CD84|8832|CD84 molecule##AJ223324|CD84|8832|CD84 molecule##AK296290|CD84|8832|CD84 molecule##CR933666|CD84|8832|CD84 molecule##AJ306388|SLAMF6|114836|SLAM family member 6##AJ277141|SLAMF6|114836|SLAM family member 6##AK313549|SLAMF6|114836|SLAM family member 6##BC113893|SLAMF6|114836|SLAM family member 6##BC114495|SLAMF6|114836|SLAM family member 6##AK310085|SLAMF6|114836|SLAM family member 6##AL832854|SLAMF6|114836|SLAM family member 6##BC090928|SLAMF6|114836|SLAM family member 6##AK300013|SLAMF6|114836|SLAM family member 6##AK301026|SLAMF6|114836|SLAM family member 6##AY358159|SLAMF6|114836|SLAM family member 6##AK303990|SLAMF6|114836|SLAM family member 6##AK125624|SLAMF6|114836|SLAM family member 6##NM_001184714|SLAMF6|114836|SLAM family member 6##NM_001184715|SLAMF6|114836|SLAM family member 6##NM_001184716|SLAMF6|114836|SLAM family member 6##NM_052931|SLAMF6|114836|SLAM family member 6##AK314244|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_003037|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BC012602|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BT019813|CD48|962|CD48 molecule##CR457012|CD48|962|CD48 molecule##DQ896316|CD48|962|CD48 molecule##EU176422|CD48|962|CD48 molecule##M59904|CD48|962|CD48 molecule##M37766|CD48|962|CD48 molecule##BC016182|CD48|962|CD48 molecule##NM_001778|CD48|962|CD48 molecule##X06341|CD48|962|CD48 molecule##BC030224|CD48|962|CD48 molecule##AK225636|CD48|962|CD48 molecule##AK310624|CD48|962|CD48 molecule##AK310744|CD48|962|CD48 molecule##AK298548|SLAMF7|57823|SLAM family member 7##AK298499|SLAMF7|57823|SLAM family member 7##AY358512|SLAMF7|57823|SLAM family member 7##AL834424|SLAMF7|57823|SLAM family member 7##AK301438|SLAMF7|57823|SLAM family member 7##AK290706|SLAMF7|57823|SLAM family member 7##AK292097|SLAMF7|57823|SLAM family member 7##AK292148|SLAMF7|57823|SLAM family member 7##AK301137|SLAMF7|57823|SLAM family member 7##AK301432|SLAMF7|57823|SLAM family member 7##AF390894|SLAMF7|57823|SLAM family member 7##AB027233|SLAMF7|57823|SLAM family member 7##NM_021181|SLAMF7|57823|SLAM family member 7##AF291815|SLAMF7|57823|SLAM family member 7##AJ271869|SLAMF7|57823|SLAM family member 7##AJ276429|SLAMF7|57823|SLAM family member 7##BC027867|SLAMF7|57823|SLAM family member 7##AM392941|SLAMF7|57823|SLAM family member 7##AM393275|SLAMF7|57823|SLAM family member 7##EU832487|SLAMF7|57823|SLAM family member 7##EU832567|SLAMF7|57823|SLAM family member 7	0.990819	0.0	denovo_WM_7:51:0.237	denovo_WM_7:52:0.237	denovo_WM_7:53:0.237	denovo_WM_7:54:0.237
chr9	135362922	135363094	reg1008405.p2	5.654	+	AK128819 NM_207417 BC118593 BC124555	-77396	+	TSC_hg19_v1_chr9_-_135282210 BC050734 X83973 BC143821 BC127669 BC127670 BC143048 BC143049 BC062692 BC104639 AK225119 AK302902 NM_001205296 NM_007344	-80807	-	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	-132601	-	TSC_hg19_v1_chr9_+_135457992 AK054797 NM_020064 BC136956 BC136969 BC144433 AF325688 AB463426 AF321618	95071	+	TSC_hg19_v1_chr9_-_135545374 AK225121 AK027002 AK225350 AK304715 BC012726	182372	-	TSC_hg19_v1_chr9_+_135545447 BC060821	182410	+	AK128819|C9orf171|389799|chromosome 9 open reading frame 171##NM_207417|C9orf171|389799|chromosome 9 open reading frame 171##BC118593|C9orf171|389799|chromosome 9 open reading frame 171##BC124555|C9orf171|389799|chromosome 9 open reading frame 171##BC050734|TTF1|7270|transcription termination factor, RNA polymerase I##BC143821|TTF1|7270|transcription termination factor, RNA polymerase I##BC127669|TTF1|7270|transcription termination factor, RNA polymerase I##BC127670|TTF1|7270|transcription termination factor, RNA polymerase I##BC143048|TTF1|7270|transcription termination factor, RNA polymerase I##BC143049|TTF1|7270|transcription termination factor, RNA polymerase I##BC062692|TTF1|7270|transcription termination factor, RNA polymerase I##BC104639|TTF1|7270|transcription termination factor, RNA polymerase I##AK225119|TTF1|7270|transcription termination factor, RNA polymerase I##AK302902|TTF1|7270|transcription termination factor, RNA polymerase I##NM_001205296|TTF1|7270|transcription termination factor, RNA polymerase I##NM_007344|TTF1|7270|transcription termination factor, RNA polymerase I##BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin##AK054797|BARHL1|56751|BarH-like homeobox 1##NM_020064|BARHL1|56751|BarH-like homeobox 1##BC136956|BARHL1|56751|BarH-like homeobox 1##BC136969|BARHL1|56751|BarH-like homeobox 1##BC144433|BARHL1|56751|BarH-like homeobox 1##AF325688|BARHL1|56751|BarH-like homeobox 1##AF321618|BARHL1|56751|BarH-like homeobox 1##AK225121|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AK027002|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AK225350|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AK304715|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##BC012726|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##BC060821|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa	0.992395	0.0	denovo_WM_7:30:0.479	denovo_WM_7:31:0.479
chr3	155267058	155267189	reg1007847.p2	5.653	+	NM_007289 TSC_hg19_v1_chr3_+_154798107 BC101632 BC143465 BC101658	-468990	+	TSC_hg19_v1_chr3_+_154797924 NM_007288	-469192	+	TSC_hg19_v1_chr3_+_154797847 Y00811	-469251	+	NM_001130960 NM_001130961 TSC_hg19_v1_chr3_-_155394133 AK096620	127031	-	BC113950 NM_014996	154873	-	BC042198 AF115515 TSC_hg19_v1_chr3_-_155524068 BC064898 AK055701 NM_173657 AL832165 AK289890	256938	-	NM_007289|MME|4311|membrane metallo-endopeptidase##BC101632|MME|4311|membrane metallo-endopeptidase##BC143465|MME|4311|membrane metallo-endopeptidase##BC101658|MME|4311|membrane metallo-endopeptidase##NM_007288|MME|4311|membrane metallo-endopeptidase##Y00811|MME|4311|membrane metallo-endopeptidase##NM_001130960|PLCH1|23007|phospholipase C, eta 1##NM_001130961|PLCH1|23007|phospholipase C, eta 1##AK096620|PLCH1|23007|phospholipase C, eta 1##BC113950|PLCH1|23007|phospholipase C, eta 1##NM_014996|PLCH1|23007|phospholipase C, eta 1##BC042198|C3orf33|285315|chromosome 3 open reading frame 33##AF115515|C3orf33|285315|chromosome 3 open reading frame 33##BC064898|C3orf33|285315|chromosome 3 open reading frame 33##AK055701|C3orf33|285315|chromosome 3 open reading frame 33##NM_173657|C3orf33|285315|chromosome 3 open reading frame 33##AL832165|C3orf33|285315|chromosome 3 open reading frame 33##AK289890|C3orf33|285315|chromosome 3 open reading frame 33	0.935966	0.0	denovo_WM_7:35:0.857
chr5	138972092	138972219	reg1009105.p2	5.653	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	-30807	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-31230	+	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	-31382	+	TSC_hg19_v1_chr5_+_139027874 AK024338	55719	+	TSC_hg19_v1_chr5_+_139027942 BC006428	55775	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	55829	+	U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK024338|CXXC5|51523|CXXC finger protein 5##BC006428|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5	0.995286	0.0	
chr1	246059616	246059757	reg1005815.p1	5.652	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-741378	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-926003	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-926056	+	AK024733 NM_022743	521025	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	610868	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	610922	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.988752	0.0	denovo_WM_7:12:0.330	denovo_WM_7:13:0.330	denovo_WM_7:14:0.330
chr16	12058206	12058351	reg1009339.p2	5.652	+	NM_001130007	-47760	-	TSC_hg19_v1_chr16_-_12009919 AK315267	-48350	-	TSC_hg19_v1_chr16_-_12009814 X17644 NM_001130006 NM_002094	-48440	-	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	806	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	12295	+	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	839373	-	NM_001130007|GSPT1|2935|G1 to S phase transition 1##AK315267|GSPT1|2935|G1 to S phase transition 1##X17644|GSPT1|2935|G1 to S phase transition 1##NM_001130006|GSPT1|2935|G1 to S phase transition 1##NM_002094|GSPT1|2935|G1 to S phase transition 1##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1	0.99753	0.0	denovo_WM_7:3:0.884
chr2	224670836	224671016	reg1008513.p2	5.652	+	TSC_hg19_v1_chr2_-_224467145 NM_003469	-203747	-	TSC_hg19_v1_chr2_-_224467100 BC022509	-203819	-	M25756 TSC_hg19_v1_chr2_-_224467083 AK298828 AK312452	-203860	-	AF393369 BC021898 TSC_hg19_v1_chr2_-_224702284 AK025338 AK299026	31323	-	TSC_hg19_v1_chr2_-_224702300 BC009606 NM_001039569	31384	-	TSC_hg19_v1_chr2_-_224810010 AF411977 AB527455 CU691898	139067	-	NM_003469|SCG2|7857|secretogranin II##BC022509|SCG2|7857|secretogranin II##M25756|SCG2|7857|secretogranin II##AK298828|SCG2|7857|secretogranin II##AK312452|SCG2|7857|secretogranin II##AF393369|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC021898|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK025338|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK299026|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC009606|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_001039569|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AF411977|WDFY1|57590|WD repeat and FYVE domain containing 1	0.99751	0.0	
chr7	8218258	8218324	reg1010078.p1	5.652	+	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	-209858	+	BC009868 NM_002947	-460054	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-537918	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	83425	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	83500	-	TSC_hg19_v1_chr7_-_8302174 U38260 L01100 BC008640 BC005922 NM_004968	83882	-	NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa##U38260|ICA1|3382|islet cell autoantigen 1, 69kDa##L01100|ICA1|3382|islet cell autoantigen 1, 69kDa##BC008640|ICA1|3382|islet cell autoantigen 1, 69kDa##BC005922|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_004968|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chr19	43019730	43019871	reg1008740.p1	5.651	+	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	-72676	-	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	-88262	-	TSC_hg19_v1_chr19_-_42928157 BC029301	-91587	-	X16356 TSC_hg19_v1_chr19_-_43031473	11609	-	M76742 S71326 CU677011 AY766113 TSC_hg19_v1_chr19_-_43032631 D90311 X14831 X16354 D90313 J03858 BC024164 BC014473 D12502 D90312 M69176 M72238 AL833584 AK314211 NM_001024912 NM_001184813 NM_001184815 NM_001184816 NM_001205344 NM_001712	12792	-	CU693190 DQ891971 DQ895161 X52378 AK297012 BC026263 D90064 M33326 AK312652 NM_001816	79230	-	BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive##BC029301|LIPE|3991|lipase, hormone-sensitive##X16356|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M76742|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##S71326|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AY766113|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90311|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X14831|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X16354|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90313|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##J03858|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC024164|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC014473|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D12502|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90312|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M69176|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M72238|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AL833584|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AK314211|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001024912|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184813|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184815|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184816|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001205344|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001712|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##DQ891971|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##DQ895161|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##X52378|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK297012|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##BC026263|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##D90064|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##M33326|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK312652|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##NM_001816|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8	0.039307	0.0	
chr2	46072428	46072567	reg1007781.p2	5.651	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-193423	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-234090	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-277369	-	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	452094	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	452478	+	NM_001145051	634206	+	AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375	0.992394	0.0	denovo_WM_7:24:0.313	denovo_WM_7:25:0.313	denovo_WM_7:26:0.313
chr6	144402907	144403028	reg1008896.p2	5.651	+	EF100438 EF100439 EF100440 EF100441 EF100442 EF100443 EF100444 EF100445 TSC_hg19_v1_chr6_-_144385724 NM_001080951 NM_001080955	-17277	-	TSC_hg19_v1_chr6_-_144329394 AK314570 BC059359 AK096331 NM_001080952 NM_001080953 NM_001080954 NM_001080956 NM_002656 NM_006718 AJ311395 U72621	-73503	-	EF100446 EF100447 EF100448 EF100449 EF100450 EF100451 EF100452 TSC_hg19_v1_chr6_-_144329322	-73679	-	AB528231 AM393071 BC000198 TSC_hg19_v1_chr6_-_144416703 AK312079 AK074417	13704	-	NM_031287 TSC_hg19_v1_chr6_-_144416757	13795	-	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	68754	+	EF100438|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100439|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100440|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100441|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100442|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100443|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100444|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100445|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080951|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080955|PLAGL1|5325|pleiomorphic adenoma gene-like 1##AK314570|PLAGL1|5325|pleiomorphic adenoma gene-like 1##BC059359|HYMAI|57061|hydatidiform mole associated and imprinted (non-protein coding)##AK096331|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080952|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080953|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080954|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_001080956|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_002656|PLAGL1|5325|pleiomorphic adenoma gene-like 1##NM_006718|PLAGL1|5325|pleiomorphic adenoma gene-like 1##AJ311395|PLAGL1|5325|pleiomorphic adenoma gene-like 1##U72621|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100446|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100447|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100448|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100449|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100450|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100451|PLAGL1|5325|pleiomorphic adenoma gene-like 1##EF100452|PLAGL1|5325|pleiomorphic adenoma gene-like 1##AM393071|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##BC000198|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK312079|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK074417|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##NM_031287|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11	1.992537	0.0	denovo_WM_7:-94:0.451
chr3	171011261	171011441	reg1007718.p2	5.650	+	NM_000340	-266584	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-266818	-	AB528020 J03810 TSC_hg19_v1_chr3_-_170744510 AK313622 BC060041 AK290846 AK292741	-266861	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	166720	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	516904	-	NM_001164436 AK026825	549797	+	NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##J03810|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK313622|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##BC060041|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK290846|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK292741|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212	0.012138	0.0	
chr3	77369829	77369940	reg1008316.p1	5.650	+	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	-280604	+	TSC_hg19_v1_chr3_-_75834698 AK123776	-1535182	-	NM_001128223	-1535630	-	TSC_hg19_v1_chr3_-_78666943 AK025535	1297101	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	1698703	-	NM_002941	2447174	-	DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##AK123776|ZNF717|100131827|zinc finger protein 717##NM_001128223|ZNF717|100131827|zinc finger protein 717##AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)	1.100157	0.836294	CTCF.p2:11:0.836	denovo_WM_7:-25:0.431	denovo_WM_7:-36:0.236
chr4	40435596	40435755	reg1008052.p1	5.650	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-98230	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-237034	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-377143	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	80909	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	82283	-	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	196190	-	BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47	0.0	0.0	
chr1	35835966	35836131	reg1006711.p2	5.649	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-101420	+	TSC_hg19_v1_chr1_+_35734567 AK308320 NM_005095	-101486	+	NM_005066 TSC_hg19_v1_chr1_-_35658747 BC051192	-177303	-	BX648067 TSC_hg19_v1_chr1_+_35851133	15069	+	TSC_hg19_v1_chr1_-_35920081 AK090878	84110	-	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	186921	-	BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##AK308320|ZMYM4|9202|zinc finger, MYM-type 4##NM_005095|ZMYM4|9202|zinc finger, MYM-type 4##NM_005066|SFPQ|6421|splicing factor proline/glutamine-rich##BC051192|SFPQ|6421|splicing factor proline/glutamine-rich##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##AK090878|KIAA0319L|79932|KIAA0319-like##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like	1.99154	0.0	denovo_WM_7:-86:0.880	denovo_WM_7:-101:0.863
chr2	62443872	62443983	reg1008328.p2	5.649	+	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	-20661	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-311098	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-328141	-	BC047439 AK091902 AX747245 NM_198276	289612	-	AK292545 NM_001142615	457058	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	489039	+	AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1	0.768721	0.0	denovo_WM_7:-4:0.681
chr13	113840597	113840761	reg1006161.p1	5.648	+	M55670 M55671 NM_003891 BC074906 BC074907	-27710	+	NM_000504 BC046125 TSC_hg19_v1_chr13_+_113777153 AK310772 AK310775 AK313798 BC040125 CU692304 M57285 K03194 M22613	-63512	+	AK310779 TSC_hg19_v1_chr13_+_113760101 AK298404 NM_000131 NM_019616 BC130468 M13232 AF272774 AK311682 AB527973 EU557239 HQ258414 AK311565	-80536	+	TSC_hg19_v1_chr13_-_113862984 CU677649 AK001302 BC031246 AK309321 AF183426 BC016614 AK023313 AK002167 AK289462 AK001185 AK000888 NM_001127202 NM_001127203 NM_018386	22307	-	TSC_hg19_v1_chr13_+_113863089 AL833355 NM_003589 AF077188	22422	+	TSC_hg19_v1_chr13_+_113863926 BC008308 NM_001008895 AB590820 AB178950 AY365124	23255	+	M55670|PROZ|8858|protein Z, vitamin K-dependent plasma glycoprotein##M55671|PROZ|8858|protein Z, vitamin K-dependent plasma glycoprotein##NM_003891|PROZ|8858|protein Z, vitamin K-dependent plasma glycoprotein##BC074906|PROZ|8858|protein Z, vitamin K-dependent plasma glycoprotein##BC074907|PROZ|8858|protein Z, vitamin K-dependent plasma glycoprotein##NM_000504|F10|2159|coagulation factor X##BC046125|F10|2159|coagulation factor X##AK310772|F10|2159|coagulation factor X##AK310775|F10|2159|coagulation factor X##AK313798|F10|2159|coagulation factor X##BC040125|F10|2159|coagulation factor X##M57285|F10|2159|coagulation factor X##K03194|F10|2159|coagulation factor X##M22613|F10|2159|coagulation factor X##AK310779|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##AK298404|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##NM_000131|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##NM_019616|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##BC130468|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##M13232|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##AK311682|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##EU557239|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##HQ258414|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##AK311565|F7|2155|coagulation factor VII (serum prothrombin conversion accelerator)##AK001302|PCID2|55795|PCI domain containing 2##BC031246|PCID2|55795|PCI domain containing 2##AK309321|PCID2|55795|PCI domain containing 2##AF183426|PCID2|55795|PCI domain containing 2##BC016614|PCID2|55795|PCI domain containing 2##AK023313|PCID2|55795|PCI domain containing 2##AK002167|PCID2|55795|PCI domain containing 2##AK289462|PCID2|55795|PCI domain containing 2##AK001185|PCID2|55795|PCI domain containing 2##AK000888|PCID2|55795|PCI domain containing 2##NM_001127202|PCID2|55795|PCI domain containing 2##NM_001127203|PCID2|55795|PCI domain containing 2##NM_018386|PCID2|55795|PCI domain containing 2##AL833355|CUL4A|8451|cullin 4A##NM_003589|CUL4A|8451|cullin 4A##AF077188|CUL4A|8451|cullin 4A##BC008308|CUL4A|8451|cullin 4A##NM_001008895|CUL4A|8451|cullin 4A##AB178950|CUL4A|8451|cullin 4A##AY365124|CUL4A|8451|cullin 4A	0.0	0.0	
chr3	5079740	5079920	reg1005826.p2	5.648	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-58476	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	-58649	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	-58714	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	84125	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	84261	+	TSC_hg19_v1_chr3_+_5229344 AK298511	149497	+	AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	1.991419	0.0	
chr10	112591403	112591560	reg1005438.p2	5.647	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-187352	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-247366	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-263989	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	40131	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	40233	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	87215	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	1.409249	0.0	denovo_WM_7:-38:0.267
chr2	47530308	47530468	reg1008503.p1	5.647	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-126679	-	TSC_hg19_v1_chr2_-_47403656 BC008437	-126734	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	-126738	-	NM_002354 TSC_hg19_v1_chr2_+_47596376	65954	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	66157	+	TSC_hg19_v1_chr2_+_47630218 AK304496	99816	+	NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	0.0	0.0	
chr10	1038864	1039044	reg1003212.p2	5.646	+	TSC_hg19_v1_chr10_+_1034373 BC008683 BC021243 AF120334 BC038975 AK001548 AK097093 AK222861 AK295231 AF325353 BC033784 AK302219	-4556	+	TSC_hg19_v1_chr10_+_1034348 AK001552 NM_012341	-4613	+	AK130873 TSC_hg19_v1_chr10_-_1034282	-4655	-	BC017778 AK056950 NM_033261	32843	-	TSC_hg19_v1_chr10_-_1094827 X17025 AK222875 BC107893	55879	-	AK311110 TSC_hg19_v1_chr10_-_1094867	55916	-	BC008683|GTPBP4|23560|GTP binding protein 4##BC021243|GTPBP4|23560|GTP binding protein 4##AF120334|GTPBP4|23560|GTP binding protein 4##BC038975|GTPBP4|23560|GTP binding protein 4##AK001548|GTPBP4|23560|GTP binding protein 4##AK097093|GTPBP4|23560|GTP binding protein 4##AK222861|GTPBP4|23560|GTP binding protein 4##AK295231|GTPBP4|23560|GTP binding protein 4##AF325353|GTPBP4|23560|GTP binding protein 4##BC033784|GTPBP4|23560|GTP binding protein 4##AK302219|GTPBP4|23560|GTP binding protein 4##AK001552|GTPBP4|23560|GTP binding protein 4##NM_012341|GTPBP4|23560|GTP binding protein 4##AK130873|LOC100288619|100288619|uncharacterized LOC100288619##BC017778|IDI2|91734|isopentenyl-diphosphate delta isomerase 2##AK056950|IDI2|91734|isopentenyl-diphosphate delta isomerase 2##NM_033261|IDI2|91734|isopentenyl-diphosphate delta isomerase 2##X17025|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AK222875|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##BC107893|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AK311110|IDI1|3422|isopentenyl-diphosphate delta isomerase 1	0.070252	0.0	
chr3	8996589	8996749	reg1007687.p1	5.645	+	TSC_hg19_v1_chr3_-_8811300 NM_000916	-185385	-	X64878 TSC_hg19_v1_chr3_-_8811121 AK313830	-185583	-	AK291892 NM_001234 NM_033337 BC069368 AF036365 BC102033 BC102036 BC102037 Y14747 CU686780 AF043101	-221144	+	AB528316 DQ891197 DQ894380 TSC_hg19_v1_chr3_-_9005128 AY004333 BC001302 AK222771 AF169796 AK023075 NM_020165	8461	-	AB007871 AB384477 AK094355 AF427144 TSC_hg19_v1_chr3_-_9290871 AF464189	294075	-	TSC_hg19_v1_chr3_-_9291320 NM_001033117 NM_014850 BC140004 AK054831	294649	-	NM_000916|OXTR|5021|oxytocin receptor##X64878|OXTR|5021|oxytocin receptor##AK313830|OXTR|5021|oxytocin receptor##AK291892|CAV3|859|caveolin 3##NM_001234|CAV3|859|caveolin 3##NM_033337|CAV3|859|caveolin 3##BC069368|CAV3|859|caveolin 3##AF036365|CAV3|859|caveolin 3##BC102033|CAV3|859|caveolin 3##BC102036|CAV3|859|caveolin 3##BC102037|CAV3|859|caveolin 3##Y14747|CAV3|859|caveolin 3##AF043101|CAV3|859|caveolin 3##DQ891197|RAD18|56852|RAD18 homolog (S. cerevisiae)##DQ894380|RAD18|56852|RAD18 homolog (S. cerevisiae)##AY004333|RAD18|56852|RAD18 homolog (S. cerevisiae)##BC001302|RAD18|56852|RAD18 homolog (S. cerevisiae)##AK222771|RAD18|56852|RAD18 homolog (S. cerevisiae)##AF169796|RAD18|56852|RAD18 homolog (S. cerevisiae)##AK023075|RAD18|56852|RAD18 homolog (S. cerevisiae)##NM_020165|RAD18|56852|RAD18 homolog (S. cerevisiae)##AB007871|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AK094355|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AF427144|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AF464189|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##NM_001033117|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##NM_014850|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##BC140004|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3##AK054831|SRGAP3|9901|SLIT-ROBO Rho GTPase activating protein 3	0.0	0.0	
chr10	90734840	90734991	reg1009513.p1	5.644	+	J05192 X13839 BC017554 TSC_hg19_v1_chr10_-_90712531 AK300353 BC093052 AK300664 AK313294 NM_001613	-22371	-	TSC_hg19_v1_chr10_+_90640003 AK056086 BC010846 NM_020799	-94937	+	AX721211 NM_144590	-123212	-	NM_000043 NM_152871 NM_152872 BC012479 TSC_hg19_v1_chr10_+_90750342	15403	+	TSC_hg19_v1_chr10_+_90750599 AK290978 X63717 M67454 X83490 X83491 X83492 X83493 DQ894675 AY495076 CR450307 EU481974 FJ373045 FJ373046 FM246457 FM246458 FM246459 X89101 Z47993 Z47994 Z47995 Z66556 Z70519 Z70520	15593	+	TSC_hg19_v1_chr10_-_90751090 AY692464 NM_001141945	16135	-	J05192|ACTA2|59|actin, alpha 2, smooth muscle, aorta##X13839|ACTA2|59|actin, alpha 2, smooth muscle, aorta##BC017554|ACTA2|59|actin, alpha 2, smooth muscle, aorta##BC093052|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK300664|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK313294|ACTA2|59|actin, alpha 2, smooth muscle, aorta##NM_001613|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK056086|STAMBPL1|57559|STAM binding protein-like 1##BC010846|STAMBPL1|57559|STAM binding protein-like 1##NM_020799|STAMBPL1|57559|STAM binding protein-like 1##NM_144590|ANKRD22|118932|ankyrin repeat domain 22##NM_000043|FAS|355|Fas (TNF receptor superfamily, member 6)##NM_152871|FAS|355|Fas (TNF receptor superfamily, member 6)##NM_152872|FAS|355|Fas (TNF receptor superfamily, member 6)##BC012479|FAS|355|Fas (TNF receptor superfamily, member 6)##AK290978|FAS|355|Fas (TNF receptor superfamily, member 6)##X63717|FAS|355|Fas (TNF receptor superfamily, member 6)##M67454|FAS|355|Fas (TNF receptor superfamily, member 6)##X83490|FAS|355|Fas (TNF receptor superfamily, member 6)##X83491|FAS|355|Fas (TNF receptor superfamily, member 6)##X83492|FAS|355|Fas (TNF receptor superfamily, member 6)##X83493|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ894675|FAS|355|Fas (TNF receptor superfamily, member 6)##AY495076|FAS|355|Fas (TNF receptor superfamily, member 6)##CR450307|FAS|355|Fas (TNF receptor superfamily, member 6)##EU481974|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373045|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373046|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246457|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246458|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246459|FAS|355|Fas (TNF receptor superfamily, member 6)##X89101|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47993|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47994|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47995|FAS|355|Fas (TNF receptor superfamily, member 6)##Z66556|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70519|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70520|FAS|355|Fas (TNF receptor superfamily, member 6)##AY692464|ACTA2|59|actin, alpha 2, smooth muscle, aorta##NM_001141945|ACTA2|59|actin, alpha 2, smooth muscle, aorta	0.996127	0.0	denovo_WM_7:1:0.928
chr22	40731073	40731253	reg1008276.p1	5.644	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-157164	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-289731	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	-290254	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	11369	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	35426	+	TSC_hg19_v1_chr22_+_40766619 AK295469	35456	+	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3	1.955825	0.0	denovo_WM_7:6:0.385	denovo_WM_7:9:0.586	denovo_WM_7:24:0.607
chr3	101663297	101663410	reg1006215.p1	5.644	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-94979	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-116393	+	AK289689 NM_001134456	-165068	+	AY090780 NM_175056 BC143817	490514	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3422227	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3422469	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	2.092188	0.0	denovo_WM_7:0:0.472	denovo_WM_7:0:0.472	denovo_WM_7:24:0.881
chr6	89214952	89215092	reg1010055.p1	5.644	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-339256	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-359986	-	BC029488 NM_030960 AF203447	-457492	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	458169	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	458286	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	458325	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.987586	0.0	denovo_WM_7:19:0.959
chrX	19858142	19858282	reg1009290.p2	5.644	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-40300	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-40337	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-169156	-	TSC_hg19_v1_chrX_-_19905450 AY542305	47251	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	47420	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	47492	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chr16	2199212	2199349	reg1007489.p1	5.643	+	TSC_hg19_v1_chr16_+_2198707 BC007681	-535	+	TSC_hg19_v1_chr16_+_2198609 AY646153 BC066913 NM_014353	-652	+	U24497 TSC_hg19_v1_chr16_-_2185898 L33243 NM_000296 NM_001009944	-13381	-	TSC_hg19_v1_chr16_+_2205783 AK090624 AX746540 NM_032271	6501	+	TSC_hg19_v1_chr16_+_2205810 AY569455	6547	+	NM_020764 AF451977	47213	-	BC007681|RAB26|25837|RAB26, member RAS oncogene family##AY646153|RAB26|25837|RAB26, member RAS oncogene family##BC066913|RAB26|25837|RAB26, member RAS oncogene family##NM_014353|RAB26|25837|RAB26, member RAS oncogene family##U24497|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##L33243|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_000296|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_001009944|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AK090624|TRAF7|84231|TNF receptor-associated factor 7##NM_032271|TRAF7|84231|TNF receptor-associated factor 7##AY569455|TRAF7|84231|TNF receptor-associated factor 7##NM_020764|CASKIN1|57524|CASK interacting protein 1##AF451977|CASKIN1|57524|CASK interacting protein 1	0.998855	0.0	
chr4	38782876	38782998	reg1006919.p2	5.643	+	AF289565 TSC_hg19_v1_chr4_-_38666549	-116448	-	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	-117111	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-803920	+	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	1662	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	23482	-	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	75491	-	AF289565|FLJ13197|79667|uncharacterized FLJ13197##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6	0.99391	0.0	denovo_WM_7:29:0.981
chr6	21597540	21597720	reg1001916.p4	5.643	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-3258	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1062907	+	CR749285 NM_001243076	-1193597	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	69029	+	BC015850 NM_000948	700099	-	X54394 X54393 GQ305133 M58594 NM_001163558	705417	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.085997	0.0	
chr7	157094801	157094981	reg1004720.p1	5.643	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-70885	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-163208	+	TSC_hg19_v1_chr7_+_156931631 NM_014671	-163245	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	34820	+	TSC_hg19_v1_chr7_+_157647233 BC034557	552383	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1285562	-	D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##NM_014671|UBE3C|9690|ubiquitin protein ligase E3C##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2	1.882915	0.0	denovo_WM_7:7:0.771	denovo_WM_7:22:0.709
chr7	22878689	22878844	reg1009225.p1	5.643	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-16323	-	TSC_hg19_v1_chr7_+_22767104 X04403	-111648	+	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	-111943	+	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	174929	-	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	174984	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	266606	+	CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)	0.996908	0.0	
chr1	100069475	100069640	reg1007701.p1	5.642	+	TSC_hg19_v1_chr1_+_99730067 AF357013 AK300361	-339472	+	AF541281 NM_001166252 NM_014839 AB007924 AK056665 AY304518 AB384482 BC042963 TSC_hg19_v1_chr1_+_99730047 AK291369 AK297417	-339607	+	BC040174 AK295688 BC140086 BC143086 AY634620 BC136350 BC144000 AY574039 FJ472844 NM_001010861 NM_001037317	-599245	-	NM_017734 AF262379 AL390971 AJ312214 BC012570 AK000278 AL390973	42010	+	AK131302 NM_001013660	161791	-	TSC_hg19_v1_chr1_+_100315653 NM_000642 U84007	246086	+	AF357013|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AK300361|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AF541281|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_001166252|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_014839|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AB007924|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AY304518|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##BC042963|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AK291369|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##BC040174|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AK295688|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC140086|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC143086|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AY634620|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC136350|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC144000|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AY574039|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##FJ472844|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_001010861|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_001037317|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_017734|PALMD|54873|palmdelphin##AF262379|PALMD|54873|palmdelphin##AL390971|PALMD|54873|palmdelphin##AJ312214|PALMD|54873|palmdelphin##BC012570|PALMD|54873|palmdelphin##AK000278|PALMD|54873|palmdelphin##AL390973|PALMD|54873|palmdelphin##AK131302|FRRS1|391059|ferric-chelate reductase 1##NM_001013660|FRRS1|391059|ferric-chelate reductase 1##NM_000642|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase##U84007|AGL|178|amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase	0.985148	0.0	denovo_WM_7:-10:0.602
chr17	31786071	31786205	reg1008337.p2	5.642	+	AL834182 NM_183377	-166133	-	AF216311 NM_173847 BC100886 BC100887	-467236	+	TSC_hg19_v1_chr17_+_31255221 AL117619 AK313569 AY358573 BC000526	-530935	+	EU446513 U50352 BC075042 BC075043 U53212 AK313043 NM_001094 U57352	697549	-	NM_002982 M24545 AK311308 AK311960 BC009716 S71513 X14768 M28226 S69738 DQ893725 EU176175 AB463485 BT007329	796193	+	NM_006273 X71087 BC092436 BC070240 BC112258 BC112260 AB587424 HQ258695	811135	+	AL834182|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_183377|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AF216311|SPACA3|124912|sperm acrosome associated 3##NM_173847|SPACA3|124912|sperm acrosome associated 3##BC100886|SPACA3|124912|sperm acrosome associated 3##BC100887|SPACA3|124912|sperm acrosome associated 3##AL117619|TMEM98|26022|transmembrane protein 98##AK313569|TMEM98|26022|transmembrane protein 98##AY358573|TMEM98|26022|transmembrane protein 98##BC000526|TMEM98|26022|transmembrane protein 98##EU446513|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U50352|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##BC075042|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##BC075043|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U53212|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AK313043|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_001094|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U57352|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_002982|CCL2|6347|chemokine (C-C motif) ligand 2##M24545|CCL2|6347|chemokine (C-C motif) ligand 2##AK311960|CCL2|6347|chemokine (C-C motif) ligand 2##BC009716|CCL2|6347|chemokine (C-C motif) ligand 2##S71513|CCL2|6347|chemokine (C-C motif) ligand 2##X14768|CCL2|6347|chemokine (C-C motif) ligand 2##M28226|CCL2|6347|chemokine (C-C motif) ligand 2##S69738|CCL2|6347|chemokine (C-C motif) ligand 2##DQ893725|CCL2|6347|chemokine (C-C motif) ligand 2##EU176175|CCL2|6347|chemokine (C-C motif) ligand 2##BT007329|CCL2|6347|chemokine (C-C motif) ligand 2##NM_006273|CCL7|6354|chemokine (C-C motif) ligand 7##X71087|CCL7|6354|chemokine (C-C motif) ligand 7##BC092436|CCL7|6354|chemokine (C-C motif) ligand 7##BC070240|CCL7|6354|chemokine (C-C motif) ligand 7##BC112258|CCL7|6354|chemokine (C-C motif) ligand 7##BC112260|CCL7|6354|chemokine (C-C motif) ligand 7##HQ258695|CCL7|6354|chemokine (C-C motif) ligand 7	1.623861	0.0	denovo_WM_7:-18:0.849	denovo_WM_7:-36:0.441
chr6	36347688	36347838	reg1004568.p1	5.642	+	BC140873 BX648558 NM_001010903 TSC_hg19_v1_chr6_-_36304663	-43138	-	AM182887 FJ457781 NM_001145717	-109527	+	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	-136802	+	AF175387 AF218365 AF116508 AF116509 AF116510 AF218235 AF218366 BC035853 AK301011 AF147782 AK223424 AJ276205 AK026144 NM_001207038 AK303829 NM_001207035 NM_001207036 NM_001207037 NM_001207039 NM_001207040 NM_001207041 NM_016135	7696	-	BC031105 NM_152990	62902	-	AY305862 NM_173562 TSC_hg19_v1_chr6_+_36410797 AK295717 AK316456	62907	+	BC140873|C6orf222|389384|chromosome 6 open reading frame 222##BX648558|C6orf222|389384|chromosome 6 open reading frame 222##NM_001010903|C6orf222|389384|chromosome 6 open reading frame 222##AM182887|PNPLA1|285848|patatin-like phospholipase domain containing 1##FJ457781|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145717|PNPLA1|285848|patatin-like phospholipase domain containing 1##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1##AF175387|ETV7|51513|ets variant 7##AF218365|ETV7|51513|ets variant 7##AF116508|ETV7|51513|ets variant 7##AF116509|ETV7|51513|ets variant 7##AF116510|ETV7|51513|ets variant 7##AF218235|ETV7|51513|ets variant 7##AF218366|ETV7|51513|ets variant 7##BC035853|ETV7|51513|ets variant 7##AK301011|ETV7|51513|ets variant 7##AF147782|ETV7|51513|ets variant 7##AK223424|ETV7|51513|ets variant 7##AJ276205|ETV7|51513|ets variant 7##AK026144|ETV7|51513|ets variant 7##NM_001207038|ETV7|51513|ets variant 7##AK303829|ETV7|51513|ets variant 7##NM_001207035|ETV7|51513|ets variant 7##NM_001207036|ETV7|51513|ets variant 7##NM_001207037|ETV7|51513|ets variant 7##NM_001207039|ETV7|51513|ets variant 7##NM_001207040|ETV7|51513|ets variant 7##NM_001207041|ETV7|51513|ets variant 7##NM_016135|ETV7|51513|ets variant 7##BC031105|PXT1|222659|peroxisomal, testis specific 1##NM_152990|PXT1|222659|peroxisomal, testis specific 1##AY305862|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_173562|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK295717|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK316456|KCTD20|222658|potassium channel tetramerisation domain containing 20	0.998075	0.0	denovo_WM_7:-101:0.457	denovo_WM_7:-102:0.457
chr11	66568604	66568784	reg1008747.p2	5.641	+	TSC_hg19_v1_chr11_+_66512242 AK302025	-56394	+	TSC_hg19_v1_chr11_+_66512221 BC028240 NM_024650	-56493	+	AB464240 BC139788 AB008567 NM_006946	-79904	-	CU688443 TSC_hg19_v1_chr11_-_66610832	42075	-	AF121951 NM_001032279 NM_005133 BC093726 BC093728 TSC_hg19_v1_chr11_+_66610911 BC052622 Y13835	42211	+	TSC_hg19_v1_chr11_+_66624583 BC071866	55854	+	AK302025|C11orf80|79703|chromosome 11 open reading frame 80##BC028240|C11orf80|79703|chromosome 11 open reading frame 80##NM_024650|C11orf80|79703|chromosome 11 open reading frame 80##BC139788|SPTBN2|6712|spectrin, beta, non-erythrocytic 2##AB008567|SPTBN2|6712|spectrin, beta, non-erythrocytic 2##NM_006946|SPTBN2|6712|spectrin, beta, non-erythrocytic 2##AF121951|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##NM_001032279|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##NM_005133|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC093726|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC093728|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC052622|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##Y13835|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC071866|LRFN4|78999|leucine rich repeat and fibronectin type III domain containing 4	0.0	0.0	
chr3	57677356	57677536	reg1008366.p1	5.641	+	TSC_hg19_v1_chr3_-_57583171 NM_001660	-94256	-	BC022866 TSC_hg19_v1_chr3_-_57583106 BC016325	-94327	-	TSC_hg19_v1_chr3_-_57583086 BC008753	-94363	-	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	1293	-	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	65756	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	316701	+	NM_001660|ARF4|378|ADP-ribosylation factor 4##BC022866|ARF4|378|ADP-ribosylation factor 4##BC016325|ARF4|378|ADP-ribosylation factor 4##BC008753|ARF4|378|ADP-ribosylation factor 4##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta	1.172025	0.0	denovo_WM_7:-41:0.258
chr3	58188598	58188750	reg1007273.p1	5.641	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	-194527	+	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	-445472	+	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	-509935	-	NM_004944	11723	-	TSC_hg19_v1_chr3_+_58223264 NM_020676 AK225942 AK172797 AK313168	34609	+	TSC_hg19_v1_chr3_+_58223518 AF225418 AK122983 BC001698	34856	+	AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##NM_004944|DNASE1L3|1776|deoxyribonuclease I-like 3##NM_020676|ABHD6|57406|abhydrolase domain containing 6##AK225942|ABHD6|57406|abhydrolase domain containing 6##AK172797|ABHD6|57406|abhydrolase domain containing 6##AK313168|ABHD6|57406|abhydrolase domain containing 6##AF225418|ABHD6|57406|abhydrolase domain containing 6##AK122983|ABHD6|57406|abhydrolase domain containing 6##BC001698|ABHD6|57406|abhydrolase domain containing 6	0.994038	0.0	denovo_WM_7:-87:0.881
chr3	98255529	98255595	reg1006399.p1	5.641	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-4753	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-13696	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-13797	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	56857	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	195683	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	196025	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.0	0.0	
chr4	39726989	39727123	reg1009083.p1	5.641	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-27252	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-86500	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-197430	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	252282	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	252537	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	331476	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	1.977712	0.0	denovo_WM_7:-34:0.642	denovo_WM_7:-35:0.266	denovo_WM_7:-49:0.327	denovo_WM_7:-50:0.592
chr9	45438519	45438681	reg1004238.p4	5.641	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1753757	+	NM_001145196	-1807871	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-2305113	-	TSC_hg19_v1_chr9_+_45441926 BC006438	3326	+	BC040528 NM_001113541 NM_015667	20071009	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21018701	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.995777	0.0	
chr10	30716178	30716315	reg1008594.p1	5.640	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-78013	-	TSC_hg19_v1_chr10_-_30348516 AK308850 NM_020848 BC071601	-367752	-	TSC_hg19_v1_chr10_-_30316350 BC047548	-399815	-	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	6693	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	6875	+	AF139543 BC066294 NM_183058	202389	-	AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AK308850|KIAA1462|57608|KIAA1462##NM_020848|KIAA1462|57608|KIAA1462##BC071601|KIAA1462|57608|KIAA1462##BC047548|KIAA1462|57608|KIAA1462##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2	0.999297	0.0	
chr1	39280697	39280833	reg1008140.p1	5.640	+	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	-768316	-	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-802335	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-802380	+	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	44621	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	58251	-	AK312811 BC051675 AK123051 NM_030772	66512	-	L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein##AK312811|GJA9|81025|gap junction protein, alpha 9, 59kDa##BC051675|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##AK123051|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##NM_030772|GJA9|81025|gap junction protein, alpha 9, 59kDa	0.569178	0.0	
chr1	51434389	51434528	reg1005992.p1	5.640	+	TSC_hg19_v1_chr1_+_51434375 BC000598 BC005041	-66	+	TSC_hg19_v1_chr1_+_51434315 AF041248 NM_001262	-156	+	TSC_hg19_v1_chr1_-_51425930 BC004970 NM_007051	-8525	-	TSC_hg19_v1_chr1_+_51434477 AK021794 BC017036	20	+	NM_078626	1183	+	TSC_hg19_v1_chr1_+_51435925 U17074 CU674290 AB587581 CR450289 DQ891516 DQ894707	1517	+	BC000598|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##BC005041|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##AF041248|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##NM_001262|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##BC004970|FAF1|11124|Fas (TNFRSF6) associated factor 1##NM_007051|FAF1|11124|Fas (TNFRSF6) associated factor 1##AK021794|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##BC017036|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##NM_078626|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##U17074|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##CR450289|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##DQ891516|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)##DQ894707|CDKN2C|1031|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	0.0	0.0	
chr18	14132601	14132713	reg1007830.p2	5.640	+	BC010705 AK096748 BC024227 BC037787 NM_145287	-200	-	AK315319 BC094710 NM_000529 AK289381	-217121	-	BC095531 NM_005913	-307115	+	TSC_hg19_v1_chr18_+_14179298 BC127726	46652	+	BC140940 BX649118 AK307658 NM_001137671	410887	-	AF269088 NM_001145029 BC028407	615628	+	BC010705|ZNF519|162655|zinc finger protein 519##AK096748|ZNF519|162655|zinc finger protein 519##BC024227|ZNF519|162655|zinc finger protein 519##BC037787|ZNF519|162655|zinc finger protein 519##NM_145287|ZNF519|162655|zinc finger protein 519##AK315319|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC094710|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##NM_000529|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##AK289381|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC095531|MC5R|4161|melanocortin 5 receptor##NM_005913|MC5R|4161|melanocortin 5 receptor##BC127726|ANKRD20A5P|440482|ankyrin repeat domain 20 family, member A5, pseudogene##BC140940|POTEC|388468|POTE ankyrin domain family, member C##BX649118|POTEC|388468|POTE ankyrin domain family, member C##AK307658|POTEC|388468|POTE ankyrin domain family, member C##NM_001137671|POTEC|388468|POTE ankyrin domain family, member C##AF269088|ANKRD30B|374860|ankyrin repeat domain 30B##NM_001145029|ANKRD30B|374860|ankyrin repeat domain 30B##BC028407|ANKRD30B|374860|ankyrin repeat domain 30B	0.0	0.0	
chr2	136816934	136817066	reg1008762.p1	5.640	+	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-73784	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	-73871	-	BT006710 CU674308 DQ890741 DQ893912 TSC_hg19_v1_chr2_-_136743053 CR749809 BC107749 AY762100	-73945	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	56798	-	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	58676	-	TSC_hg19_v1_chr2_+_137523114 AK299929	706116	+	AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##BT006710|DARS|1615|aspartyl-tRNA synthetase##DQ890741|DARS|1615|aspartyl-tRNA synthetase##DQ893912|DARS|1615|aspartyl-tRNA synthetase##CR749809|DARS|1615|aspartyl-tRNA synthetase##BC107749|DARS|1615|aspartyl-tRNA synthetase##AY762100|DARS|1615|aspartyl-tRNA synthetase##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B	0.952148	0.0	denovo_WM_7:23:0.471	denovo_WM_7:25:0.391
chr8	29991488	29991591	reg1004197.p2	5.640	+	TSC_hg19_v1_chr8_+_29952989 AK075363 AF161461 DQ891897 DQ895083 CR541735 CR541760	-38540	+	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	-38596	+	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	-50967	-	NM_001100916 EU518495	10661	-	D84145 NM_006571 TSC_hg19_v1_chr8_+_30013882 AK314128 BC013175 CR456851	22316	+	Z36874 TSC_hg19_v1_chr8_+_30209759	218198	+	AK075363|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF161461|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ891897|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##DQ895083|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541735|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##CR541760|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001100916|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##EU518495|MBOAT4|619373|membrane bound O-acyltransferase domain containing 4##D84145|DCTN6|10671|dynactin 6##NM_006571|DCTN6|10671|dynactin 6##AK314128|DCTN6|10671|dynactin 6##BC013175|DCTN6|10671|dynactin 6##CR456851|DCTN6|10671|dynactin 6	0.0	0.0	
chr20	4270750	4270816	reg1014499.p1	5.639	+	TSC_hg19_v1_chr20_-_4229520 L31772 NM_000678 U03864 S70782	-41193	-	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	-141260	+	TSC_hg19_v1_chr20_+_4129438 NM_175839 NM_175840 NM_175841 NM_175842	-141348	+	NM_000311 NM_001080121 NM_001080122 NM_183079 TSC_hg19_v1_chr20_+_4667101 X82545 AK090575 AK293312 AK295415 AK295943 AK312276 AX746518 BC014544 BC022532 BC012844 M13899 AY008282 NM_001080123	396193	+	AK313404 TSC_hg19_v1_chr20_+_4702555 BC043644 NM_012409 AF187843 AY358985	431751	+	AY154472 NM_170774	524985	-	L31772|ADRA1D|146|adrenergic, alpha-1D-, receptor##NM_000678|ADRA1D|146|adrenergic, alpha-1D-, receptor##U03864|ADRA1D|146|adrenergic, alpha-1D-, receptor##S70782|ADRA1D|146|adrenergic, alpha-1D-, receptor##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase##NM_175839|SMOX|54498|spermine oxidase##NM_175840|SMOX|54498|spermine oxidase##NM_175841|SMOX|54498|spermine oxidase##NM_175842|SMOX|54498|spermine oxidase##NM_000311|PRNP|5621|prion protein##NM_001080121|PRNP|5621|prion protein##NM_001080122|PRNP|5621|prion protein##NM_183079|PRNP|5621|prion protein##AK090575|PRNP|5621|prion protein##AK293312|PRNP|5621|prion protein##AK295415|PRNP|5621|prion protein##AK295943|PRNP|5621|prion protein##AK312276|PRNP|5621|prion protein##BC014544|PRNP|5621|prion protein##BC022532|PRNP|5621|prion protein##BC012844|PRNP|5621|prion protein##M13899|PRNP|5621|prion protein##AY008282|PRNP|5621|prion protein##NM_001080123|PRNP|5621|prion protein##AK313404|PRND|23627|prion protein 2 (dublet)##BC043644|PRND|23627|prion protein 2 (dublet)##NM_012409|PRND|23627|prion protein 2 (dublet)##AF187843|PRND|23627|prion protein 2 (dublet)##AY358985|PRND|23627|prion protein 2 (dublet)##AY154472|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_170774|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2	0.0	0.0	
chr6	160449761	160449898	reg1008713.p1	5.639	+	TSC_hg19_v1_chr6_+_160390137 NM_000876 Y00285 J03528	-59696	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	-121850	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	-228486	+	NM_003057 NM_153187 X98332 BC126364 AK289887 U77086 AB527951 HQ258293	93085	+	CU689064 BC039899 AK290787 X98333 AB075951 BC030978 NM_003058	230046	-	BC144280 TSC_hg19_v1_chr6_+_160769404 AK314590 AJ001417 NM_021977	319565	+	NM_000876|IGF2R|3482|insulin-like growth factor 2 receptor##Y00285|IGF2R|3482|insulin-like growth factor 2 receptor##J03528|IGF2R|3482|insulin-like growth factor 2 receptor##BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene##AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_003057|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##NM_153187|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##X98332|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC126364|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##AK289887|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##U77086|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##HQ258293|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC039899|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AK290787|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##X98333|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AB075951|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC030978|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##NM_003058|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC144280|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AK314590|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AJ001417|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##NM_021977|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3	0.98998	0.0	denovo_WM_7:38:0.814
chr9	6069122	6069302	reg1008037.p2	5.639	+	AF039023 AK300408 BC098406 TSC_hg19_v1_chr9_-_6015616 AK307840 BX537405 NM_001243202 NM_001243203 NM_012416	-53581	-	TSC_hg19_v1_chr9_-_6007953 NM_001017969	-61248	-	BC108654 TSC_hg19_v1_chr9_-_5968443	-100804	-	NM_001199640 NM_001199641 NM_033439 AK295908 AK313414 TSC_hg19_v1_chr9_+_6215806 AK303943 BC047085	146584	+	NM_001001874 NM_001001875 NM_033516 AK057479 AY032877 BC017589 BC042113 BC033792	259163	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	343932	+	AF039023|RANBP6|26953|RAN binding protein 6##AK300408|RANBP6|26953|RAN binding protein 6##BC098406|RANBP6|26953|RAN binding protein 6##BX537405|RANBP6|26953|RAN binding protein 6##NM_001243202|RANBP6|26953|RAN binding protein 6##NM_001243203|RANBP6|26953|RAN binding protein 6##NM_012416|RANBP6|26953|RAN binding protein 6##NM_001017969|KIAA2026|158358|KIAA2026##NM_001199640|IL33|90865|interleukin 33##NM_001199641|IL33|90865|interleukin 33##NM_033439|IL33|90865|interleukin 33##AK295908|IL33|90865|interleukin 33##AK313414|IL33|90865|interleukin 33##AK303943|IL33|90865|interleukin 33##BC047085|IL33|90865|interleukin 33##NM_001001874|TPD52L3|89882|tumor protein D52-like 3##NM_001001875|TPD52L3|89882|tumor protein D52-like 3##NM_033516|TPD52L3|89882|tumor protein D52-like 3##AK057479|TPD52L3|89882|tumor protein D52-like 3##AY032877|TPD52L3|89882|tumor protein D52-like 3##BC017589|TPD52L3|89882|tumor protein D52-like 3##BC042113|TPD52L3|89882|tumor protein D52-like 3##BC033792|TPD52L3|89882|tumor protein D52-like 3##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2	1.083748	0.0	
chrX	56805663	56805821	reg1000034.p2	5.639	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-50051	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-215691	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-546832	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	216229	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	342186	-	BC071694 NM_019003	358315	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.11095	0.137902	
chr11	45132304	45132439	reg1009014.p1	5.638	+	AF275818 NM_020229	-16808	+	TSC_hg19_v1_chr11_-_44972435 AK292837 AK096176 AK056379 AK026607 AK054815 NM_001076787 NM_006034	-159954	-	TSC_hg19_v1_chr11_-_44956087 AF010315	-176264	-	AK308841 AB384203 AM393283 BC093830 AK291009 BC093832 AL512743 AB037848 NM_001247987 NM_020826	175379	-	TSC_hg19_v1_chr11_-_45687157 AK311168 BC022567 NM_003654	554813	-	NM_001145265 NM_001145266	693251	+	AF275818|PRDM11|56981|PR domain containing 11##NM_020229|PRDM11|56981|PR domain containing 11##AK292837|TP53I11|9537|tumor protein p53 inducible protein 11##AK096176|TP53I11|9537|tumor protein p53 inducible protein 11##AK056379|TP53I11|9537|tumor protein p53 inducible protein 11##AK026607|TP53I11|9537|tumor protein p53 inducible protein 11##AK054815|TP53I11|9537|tumor protein p53 inducible protein 11##NM_001076787|TP53I11|9537|tumor protein p53 inducible protein 11##NM_006034|TP53I11|9537|tumor protein p53 inducible protein 11##AF010315|TP53I11|9537|tumor protein p53 inducible protein 11##AK308841|SYT13|57586|synaptotagmin XIII##AM393283|SYT13|57586|synaptotagmin XIII##BC093830|SYT13|57586|synaptotagmin XIII##AK291009|SYT13|57586|synaptotagmin XIII##BC093832|SYT13|57586|synaptotagmin XIII##AL512743|SYT13|57586|synaptotagmin XIII##AB037848|SYT13|57586|synaptotagmin XIII##NM_001247987|SYT13|57586|synaptotagmin XIII##NM_020826|SYT13|57586|synaptotagmin XIII##AK311168|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##BC022567|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_003654|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_001145265|SLC35C1|55343|solute carrier family 35, member C1##NM_001145266|SLC35C1|55343|solute carrier family 35, member C1	0.0	0.999121	CTCF.p2:-25:0.999
chr11	585431	585590	reg1007108.p2	5.638	+	NM_020901 TSC_hg19_v1_chr11_+_576482 AB040975 BC146771 AK308541 BC136615 BC144293 BC144294 BC144295 BC112931	-9005	+	TSC_hg19_v1_chr11_-_575850 AK057794 AK123970	-9644	-	AK123483 TSC_hg19_v1_chr11_-_568468	-17066	-	AF076494 NM_004031	30178	-	U53830 U53831 U53832 U73036 TSC_hg19_v1_chr11_-_615951 AK303752	30426	-	NM_001572 NM_004029 TSC_hg19_v1_chr11_-_616001	30491	-	NM_020901|PHRF1|57661|PHD and ring finger domains 1##AB040975|PHRF1|57661|PHD and ring finger domains 1##BC146771|PHRF1|57661|PHD and ring finger domains 1##AK308541|PHRF1|57661|PHD and ring finger domains 1##BC136615|PHRF1|57661|PHD and ring finger domains 1##BC144293|PHRF1|57661|PHD and ring finger domains 1##BC144294|PHRF1|57661|PHD and ring finger domains 1##BC144295|PHRF1|57661|PHD and ring finger domains 1##BC112931|PHRF1|57661|PHD and ring finger domains 1##AK057794|LOC143666|143666|uncharacterized LOC143666##AK123970|LOC143666|143666|uncharacterized LOC143666##AK123483|MIR210HG|100506211|MIR210 host gene (non-protein coding)##AF076494|IRF7|3665|interferon regulatory factor 7##NM_004031|IRF7|3665|interferon regulatory factor 7##U53830|IRF7|3665|interferon regulatory factor 7##U53831|IRF7|3665|interferon regulatory factor 7##U53832|IRF7|3665|interferon regulatory factor 7##U73036|IRF7|3665|interferon regulatory factor 7##AK303752|IRF7|3665|interferon regulatory factor 7##NM_001572|IRF7|3665|interferon regulatory factor 7##NM_004029|IRF7|3665|interferon regulatory factor 7	0.0	0.0	
chr17	69395438	69395599	reg1009112.p1	5.638	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1229822	+	BC033038 NM_170742	-1294524	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1324088	+	TSC_hg19_v1_chr17_-_70116937 AL833139	721420	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	721641	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	721652	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.99254	0.0	denovo_WM_7:-57:0.993
chr19	50682283	50682386	reg1005644.p1	5.638	+	DQ890967 DQ894140 AK307321 BC029535 AY358196 AB590459 AK131024 NM_152358	-15926	-	TSC_hg19_v1_chr19_+_50529309 AK292452	-153011	+	TSC_hg19_v1_chr19_+_50529276 AK302293 BC018612 BX648093	-153050	+	TSC_hg19_v1_chr19_+_50691445 AK125082	9107	+	TSC_hg19_v1_chr19_+_50706878 AY165122 BC129803 NM_001077186 NM_001145809 NM_024729 AK307783 AB290169	24557	+	BC018933 TSC_hg19_v1_chr19_+_50713879	31517	+	DQ890967|IZUMO2|126123|IZUMO family member 2##DQ894140|IZUMO2|126123|IZUMO family member 2##AK307321|IZUMO2|126123|IZUMO family member 2##BC029535|IZUMO2|126123|IZUMO family member 2##AY358196|IZUMO2|126123|IZUMO family member 2##AK131024|IZUMO2|126123|IZUMO family member 2##NM_152358|IZUMO2|126123|IZUMO family member 2##AK292452|ZNF473|25888|zinc finger protein 473##AK302293|ZNF473|25888|zinc finger protein 473##BC018612|ZNF473|25888|zinc finger protein 473##BX648093|ZNF473|25888|zinc finger protein 473##AK125082|MYH14|79784|myosin, heavy chain 14, non-muscle##AY165122|MYH14|79784|myosin, heavy chain 14, non-muscle##BC129803|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001077186|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001145809|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_024729|MYH14|79784|myosin, heavy chain 14, non-muscle##AK307783|MYH14|79784|myosin, heavy chain 14, non-muscle##AB290169|MYH14|79784|myosin, heavy chain 14, non-muscle##BC018933|MYH14|79784|myosin, heavy chain 14, non-muscle	0.977893	0.0	denovo_WM_7:27:0.830
chr3	70905739	70905893	reg1008596.p1	5.638	+	TSC_hg19_v1_chr3_+_70048883 BC015590	-856928	+	NM_000248 NM_001184968 NM_198158 NM_198178 Z29678 BC012503 BC065243 BC026961 GU355676	-920005	+	NM_198177 AB006989 AK297858	-990415	+	TSC_hg19_v1_chr3_-_71114076 AK074569 NM_001244813	208380	-	TSC_hg19_v1_chr3_-_71179732 AK027264	273907	-	AK297649 TSC_hg19_v1_chr3_-_71179738 BX647682	273924	-	NM_000248|MITF|4286|microphthalmia-associated transcription factor##NM_001184968|MITF|4286|microphthalmia-associated transcription factor##NM_198158|MITF|4286|microphthalmia-associated transcription factor##NM_198178|MITF|4286|microphthalmia-associated transcription factor##Z29678|MITF|4286|microphthalmia-associated transcription factor##BC012503|MITF|4286|microphthalmia-associated transcription factor##BC065243|MITF|4286|microphthalmia-associated transcription factor##BC026961|MITF|4286|microphthalmia-associated transcription factor##GU355676|MITF|4286|microphthalmia-associated transcription factor##NM_198177|MITF|4286|microphthalmia-associated transcription factor##AB006989|MITF|4286|microphthalmia-associated transcription factor##AK297858|MITF|4286|microphthalmia-associated transcription factor##AK074569|FOXP1|27086|forkhead box P1##NM_001244813|FOXP1|27086|forkhead box P1##AK027264|FOXP1|27086|forkhead box P1##AK297649|FOXP1|27086|forkhead box P1##BX647682|FOXP1|27086|forkhead box P1	2.69639	0.0	denovo_WM_7:-3:0.331	denovo_WM_7:-4:0.331	denovo_WM_7:-5:0.331	denovo_WM_7:35:0.527	denovo_WM_7:36:0.223	denovo_WM_7:54:0.942
chr7	84008939	84009071	reg1007900.p1	5.638	+	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	-184683	-	NM_012431	-730527	-	AK303925 NM_001178129	-738259	-	NM_152754	742241	-	AK309116 TSC_hg19_v1_chr7_-_84816296	807230	-	TSC_hg19_v1_chr7_+_86273224 BC041407 NM_000840	2264220	+	NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##NM_012431|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##AK303925|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_001178129|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_152754|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##AK309116|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##BC041407|GRM3|2913|glutamate receptor, metabotropic 3##NM_000840|GRM3|2913|glutamate receptor, metabotropic 3	0.989347	0.0	denovo_WM_7:5:0.222	denovo_WM_7:8:0.312
chr2	135041150	135041304	reg1004855.p2	5.637	+	NM_002410 D17716 AF113921	-29342	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-715189	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-861873	-	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	435329	-	AK125008 NM_138326 BC016018 BC107420 AB071418	554991	+	TSC_hg19_v1_chr2_+_135676397 AK294889 NM_001241 NM_058241 AF048731 AK292913 BC114366	635170	+	NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AK294889|CCNT2|905|cyclin T2##NM_001241|CCNT2|905|cyclin T2##NM_058241|CCNT2|905|cyclin T2##AF048731|CCNT2|905|cyclin T2##AK292913|CCNT2|905|cyclin T2##BC114366|CCNT2|905|cyclin T2	1.987076	0.0	denovo_WM_7:-3:0.421	denovo_WM_7:-4:0.572	denovo_WM_7:10:0.491	denovo_WM_7:11:0.502
chr6	111195968	111196148	reg1008536.p2	5.637	+	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	-36	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-59332	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-59544	-	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	83772	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	83900	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	107216	+	AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)	0.0	0.0	
chr6	166672581	166672718	reg1007444.p2	5.637	+	BC098425 NM_003181	-90520	-	BC008632 BC039614 TSC_hg19_v1_chr6_-_166401541 BX647106	-271115	-	TSC_hg19_v1_chr6_-_166401424 AK289375	-271216	-	BC034775 NM_175922 TSC_hg19_v1_chr6_-_166721880	49227	-	BC018969 NM_145169 TSC_hg19_v1_chr6_-_166756020	83358	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	83385	-	BC098425|T|6862|T, brachyury homolog (mouse)##NM_003181|T|6862|T, brachyury homolog (mouse)##BC008632|LINC00473|90632|long intergenic non-protein coding RNA 473##BC039614|LINC00473|90632|long intergenic non-protein coding RNA 473##AK289375|LINC00473|90632|long intergenic non-protein coding RNA 473##BC034775|PRR18|285800|proline rich 18##NM_175922|PRR18|285800|proline rich 18##BC018969|SFT2D1|113402|SFT2 domain containing 1##NM_145169|SFT2D1|113402|SFT2 domain containing 1##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1	0.999142	0.0	denovo_WM_7:14:0.739
chr8	119100654	119100799	reg1005806.p1	5.637	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-567684	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-567768	+	NM_001172814 NM_173851	-953390	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	23235	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	533399	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	533481	-	BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12	0.998992	0.0	denovo_WM_7:12:0.462	denovo_WM_7:13:0.518
chr8	81895526	81895655	reg1008006.p2	5.637	+	AK131274 NM_001033723	-108575	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-497106	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-811820	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	128724	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	297183	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	464079	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.041144	0.0	
chr9	113802054	113802209	reg1007992.p1	5.637	+	TSC_hg19_v1_chr9_-_113801481 AK290287	-629	-	AK298590 TSC_hg19_v1_chr9_-_113801086	-1098	-	AK299279 TSC_hg19_v1_chr9_-_113800499 BC036034 AK022808 NM_001401 NM_057159	-1719	-	BC111086 NM_205859	288581	-	TSC_hg19_v1_chr9_-_114245830 AK308313	443697	-	TSC_hg19_v1_chr9_-_114246233 AK122712	444134	-	AK290287|LPAR1|1902|lysophosphatidic acid receptor 1##AK298590|LPAR1|1902|lysophosphatidic acid receptor 1##AK299279|LPAR1|1902|lysophosphatidic acid receptor 1##BC036034|LPAR1|1902|lysophosphatidic acid receptor 1##AK022808|LPAR1|1902|lysophosphatidic acid receptor 1##NM_001401|LPAR1|1902|lysophosphatidic acid receptor 1##NM_057159|LPAR1|1902|lysophosphatidic acid receptor 1##BC111086|OR2K2|26248|olfactory receptor, family 2, subfamily K, member 2##NM_205859|OR2K2|26248|olfactory receptor, family 2, subfamily K, member 2##AK308313|KIAA0368|23392|KIAA0368##AK122712|KIAA0368|23392|KIAA0368	0.0	0.0	
chr9	132721275	132721408	reg1004911.p2	5.637	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-123576	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-123619	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-123657	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	84013	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	84147	-	BC039728 NM_001136557 NM_001136558 NM_020960	94643	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.998463	0.0	
chr9	94467791	94467889	reg1007706.p1	5.637	+	TSC_hg19_v1_chr9_-_94186159 NM_005384	-281658	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	-281796	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-343641	-	TSC_hg19_v1_chr9_-_94711095 BC033697	243288	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	244549	-	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	409824	-	NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1	1.235034	0.0	denovo_WM_7:-12:0.842
chr4	22743283	22743451	reg1006950.p2	5.636	+	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	-48775	+	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	-225813	-	NM_147182 TSC_hg19_v1_chr4_-_21950396	-792983	-	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1148286	-	AF279891 TSC_hg19_v1_chr4_-_24586127	1842709	-	TSC_hg19_v1_chr4_-_24586154 AK303506 BC035974	1842793	-	BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##NM_147182|KCNIP4|80333|Kv channel interacting protein 4##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF279891|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##AK303506|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##BC035974|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.405614	0.0	denovo_WM_7:40:0.222
chr5	142612106	142612244	reg1008409.p1	5.636	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-461867	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-462203	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-534604	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	170648	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	170931	-	BC015610 TSC_hg19_v1_chr5_-_142783214	171036	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.997227	0.0	denovo_WM_7:28:0.841
chr11	73723147	73723277	reg1007591.p2	5.635	+	NM_003356 NM_022803	-2931	-	TSC_hg19_v1_chr11_-_73694300 AK025742	-28869	-	TSC_hg19_v1_chr11_-_73693886 AK222540 AK222557 NM_003355	-29327	-	TSC_hg19_v1_chr11_-_73881923 AB231764 AK092089 AX747350 BC037429 NM_015531	158856	-	TSC_hg19_v1_chr11_+_73882299 AK022725	159070	+	TSC_hg19_v1_chr11_+_73882350 BC003046 BC050705 AK225647 AF157028 NM_016147 AK001381	159131	+	NM_003356|UCP3|7352|uncoupling protein 3 (mitochondrial, proton carrier)##NM_022803|UCP3|7352|uncoupling protein 3 (mitochondrial, proton carrier)##AK025742|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##AK222540|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##AK222557|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##NM_003355|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##AB231764|C2CD3|26005|C2 calcium-dependent domain containing 3##AK092089|C2CD3|26005|C2 calcium-dependent domain containing 3##NM_015531|C2CD3|26005|C2 calcium-dependent domain containing 3##AK022725|PPME1|51400|protein phosphatase methylesterase 1##BC003046|PPME1|51400|protein phosphatase methylesterase 1##BC050705|PPME1|51400|protein phosphatase methylesterase 1##AK225647|PPME1|51400|protein phosphatase methylesterase 1##AF157028|PPME1|51400|protein phosphatase methylesterase 1##NM_016147|PPME1|51400|protein phosphatase methylesterase 1##AK001381|PPME1|51400|protein phosphatase methylesterase 1	0.993276	0.0	denovo_WM_7:16:0.248	denovo_WM_7:17:0.248	denovo_WM_7:18:0.248	denovo_WM_7:19:0.248
chr17	79626156	79626308	reg1007458.p1	5.635	+	M36476 BC106884 BX647779 NM_002602 BX537414 AB590054	-2645	-	TSC_hg19_v1_chr17_+_79609348 AB593082 AK096926 NM_031945 BC032802 BC021923 AF325213	-16896	+	AK055832 AB593081 TSC_hg19_v1_chr17_+_79604265	-21998	+	TSC_hg19_v1_chr17_-_79633609 BC090923 NM_001039842 BC048102 BC038412	7383	-	TSC_hg19_v1_chr17_-_79633636 AY007126	7425	-	TSC_hg19_v1_chr17_+_79633775 NM_199287 BC009369 CU679329	7534	+	M36476|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##BC106884|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##BX647779|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##NM_002602|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##BX537414|PDE6G|5148|phosphodiesterase 6G, cGMP-specific, rod, gamma##AB593082|TSPAN10|83882|tetraspanin 10##AK096926|TSPAN10|83882|tetraspanin 10##NM_031945|TSPAN10|83882|tetraspanin 10##BC032802|TSPAN10|83882|tetraspanin 10##BC021923|TSPAN10|83882|tetraspanin 10##AF325213|TSPAN10|83882|tetraspanin 10##AB593081|TSPAN10|83882|tetraspanin 10##BC090923|C17orf90|339229|chromosome 17 open reading frame 90##NM_001039842|C17orf90|339229|chromosome 17 open reading frame 90##BC048102|C17orf90|339229|chromosome 17 open reading frame 90##BC038412|C17orf90|339229|chromosome 17 open reading frame 90##AY007126|C17orf90|339229|chromosome 17 open reading frame 90##NM_199287|CCDC137|339230|coiled-coil domain containing 137##BC009369|CCDC137|339230|coiled-coil domain containing 137	0.995286	0.0	
chr3	57896830	57896971	reg1008937.p1	5.635	+	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	-153698	+	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	-218161	-	TSC_hg19_v1_chr3_-_57583171 NM_001660	-313710	-	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	97247	+	NM_004944	303497	-	TSC_hg19_v1_chr3_+_58223264 NM_020676 AK225942 AK172797 AK313168	326383	+	AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##NM_001660|ARF4|378|ADP-ribosylation factor 4##AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta##NM_004944|DNASE1L3|1776|deoxyribonuclease I-like 3##NM_020676|ABHD6|57406|abhydrolase domain containing 6##AK225942|ABHD6|57406|abhydrolase domain containing 6##AK172797|ABHD6|57406|abhydrolase domain containing 6##AK313168|ABHD6|57406|abhydrolase domain containing 6	0.0	0.824778	CTCF.p2:20:0.825
chr4	169645408	169645545	reg1008398.p2	5.635	+	TSC_hg19_v1_chr4_+_169552755 NM_001166109 AK095512	-92680	+	TSC_hg19_v1_chr4_+_169418204 AF464873 NM_001166108 NM_016081 BC140850 BC144666	-227256	+	TSC_hg19_v1_chr4_-_169401630 CR933601 NM_001012967	-243856	-	TSC_hg19_v1_chr4_+_169753245 NM_001166110 AB023209	107701	+	BC021973 BC033650 TSC_hg19_v1_chr4_-_169931407 AK027337 AK291756 AK299847 AL833393 NM_032783	285982	-	BC041023 TSC_hg19_v1_chr4_-_170077830	432343	-	NM_001166109|PALLD|23022|palladin, cytoskeletal associated protein##AK095512|PALLD|23022|palladin, cytoskeletal associated protein##AF464873|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166108|PALLD|23022|palladin, cytoskeletal associated protein##NM_016081|PALLD|23022|palladin, cytoskeletal associated protein##BC140850|PALLD|23022|palladin, cytoskeletal associated protein##BC144666|PALLD|23022|palladin, cytoskeletal associated protein##CR933601|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001012967|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001166110|PALLD|23022|palladin, cytoskeletal associated protein##AB023209|PALLD|23022|palladin, cytoskeletal associated protein##BC021973|CBR4|84869|carbonyl reductase 4##BC033650|CBR4|84869|carbonyl reductase 4##AK027337|CBR4|84869|carbonyl reductase 4##AK291756|CBR4|84869|carbonyl reductase 4##AL833393|CBR4|84869|carbonyl reductase 4##NM_032783|CBR4|84869|carbonyl reductase 4##BC041023|SH3RF1|57630|SH3 domain containing ring finger 1	0.0	0.0	
chr13	74423519	74423636	reg1005948.p2	5.634	+	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	-790373	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-1067267	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-1067371	-	AF161471 AF113122 NM_007249	284412	-	TSC_hg19_v1_chr13_-_74708425 AK291397	284819	-	CR749622 TSC_hg19_v1_chr13_-_75901948	1478345	-	AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12##CR749622|TBC1D4|9882|TBC1 domain family, member 4	0.999361	0.941936	CTCF.p2:34:0.942
chr2	152246953	152247092	reg1008775.p1	5.634	+	NM_007115 M31165 BC030205 AB590644 AJ419936 AJ421518 CU688838 AF086484	-32843	+	U32849 AK124323 TSC_hg19_v1_chr2_-_152146429 AK291548 AK298754 NM_004688	-100619	-	TSC_hg19_v1_chr2_-_152146171 BC001268	-100870	-	TSC_hg19_v1_chr2_+_152266419 AY727910 AY727913 NM_001177663 NM_018151 AY727911 NM_001177664 AK299572 AK299291 BX648324 AY585745 CR933663	19408	+	AY727912 NM_001177665 TSC_hg19_v1_chr2_+_152266674	19616	+	TSC_hg19_v1_chr2_-_152590990 AK096903 AK307607 BC029384 BC012533 BC056251 BC105590 NM_001164507 NM_001164508 NM_004543	343969	-	NM_007115|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##M31165|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##BC030205|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AJ419936|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AJ421518|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##AF086484|TNFAIP6|7130|tumor necrosis factor, alpha-induced protein 6##U32849|NMI|9111|N-myc (and STAT) interactor##AK124323|NMI|9111|N-myc (and STAT) interactor##AK291548|NMI|9111|N-myc (and STAT) interactor##AK298754|NMI|9111|N-myc (and STAT) interactor##NM_004688|NMI|9111|N-myc (and STAT) interactor##BC001268|NMI|9111|N-myc (and STAT) interactor##AY727910|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727913|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177663|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_018151|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727911|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177664|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK299572|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK299291|RIF1|55183|RAP1 interacting factor homolog (yeast)##BX648324|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY585745|RIF1|55183|RAP1 interacting factor homolog (yeast)##CR933663|RIF1|55183|RAP1 interacting factor homolog (yeast)##AY727912|RIF1|55183|RAP1 interacting factor homolog (yeast)##NM_001177665|RIF1|55183|RAP1 interacting factor homolog (yeast)##AK096903|NEB|4703|nebulin##AK307607|NEB|4703|nebulin##BC029384|NEB|4703|nebulin##BC012533|NEB|4703|nebulin##BC056251|NEB|4703|nebulin##BC105590|NEB|4703|nebulin##NM_001164507|NEB|4703|nebulin##NM_001164508|NEB|4703|nebulin##NM_004543|NEB|4703|nebulin	1.986048	0.0	denovo_WM_7:21:0.539	denovo_WM_7:22:0.270	denovo_WM_7:36:0.329	denovo_WM_7:37:0.599
chr14	93532641	93532782	reg1008346.p2	5.633	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-143114	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	-143267	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	-272025	+	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	48880	-	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	49503	-	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	118489	-	AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1	0.998456	0.0	denovo_WM_7:49:0.310	denovo_WM_7:50:0.310	denovo_WM_7:51:0.310
chr16	75605492	75605624	reg1007980.p1	5.633	+	AK289788 TSC_hg19_v1_chr16_+_75600276 AF087848 AK311266 AF077046 AJ010569 BC014594 BC005985 AB463663 AM393324 DQ893101 DQ896373 CR542217	-5228	+	AB030710 NM_007285 TSC_hg19_v1_chr16_+_75600274 BC029601	-5297	+	CU679755 TSC_hg19_v1_chr16_-_75590137 AK096650 NM_001077416 BC010609 AK307263 AK025820 BC063677 AY358612 AK290483 NM_001077418 NM_001077419	-15392	-	AK001687 AK314652 TSC_hg19_v1_chr16_-_75657163 BC002758 AK296834 NM_012091	51628	-	BC013246 CU678582 DQ892301 DQ895500 TSC_hg19_v1_chr16_-_75681564 BC004132 D31890 AF285758 AK126584 D32053 AK315687 NM_001130089 NM_005548	76003	-	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	76149	+	AK289788|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AF087848|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AK311266|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AF077046|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AJ010569|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC014594|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC005985|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AM393324|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##DQ893101|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##DQ896373|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##CR542217|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AB030710|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##NM_007285|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC029601|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AK096650|TMEM231|79583|transmembrane protein 231##NM_001077416|TMEM231|79583|transmembrane protein 231##BC010609|TMEM231|79583|transmembrane protein 231##AK307263|TMEM231|79583|transmembrane protein 231##AK025820|TMEM231|79583|transmembrane protein 231##BC063677|TMEM231|79583|transmembrane protein 231##AY358612|TMEM231|79583|transmembrane protein 231##AK290483|TMEM231|79583|transmembrane protein 231##NM_001077418|TMEM231|79583|transmembrane protein 231##NM_001077419|TMEM231|79583|transmembrane protein 231##AK001687|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK314652|ADAT1|23536|adenosine deaminase, tRNA-specific 1##BC002758|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK296834|ADAT1|23536|adenosine deaminase, tRNA-specific 1##NM_012091|ADAT1|23536|adenosine deaminase, tRNA-specific 1##BC013246|KARS|3735|lysyl-tRNA synthetase##DQ892301|KARS|3735|lysyl-tRNA synthetase##DQ895500|KARS|3735|lysyl-tRNA synthetase##BC004132|KARS|3735|lysyl-tRNA synthetase##D31890|KARS|3735|lysyl-tRNA synthetase##AF285758|KARS|3735|lysyl-tRNA synthetase##AK126584|KARS|3735|lysyl-tRNA synthetase##D32053|KARS|3735|lysyl-tRNA synthetase##AK315687|KARS|3735|lysyl-tRNA synthetase##NM_001130089|KARS|3735|lysyl-tRNA synthetase##NM_005548|KARS|3735|lysyl-tRNA synthetase##AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein	0.997227	0.0	denovo_WM_7:19:0.841
chr4	39713680	39713817	reg1007225.p1	5.633	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-13944	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-73192	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-184122	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	265590	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	265845	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	344784	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	1.196464	0.0	
chr6	36596772	36596922	reg1010851.p1	5.633	+	TSC_hg19_v1_chr6_+_36562140 AK304097 D28423 BC000914 BC069018 AF107405	-34667	+	TSC_hg19_v1_chr6_+_36562138 AK312553	-34711	+	NM_003017 TSC_hg19_v1_chr6_+_36562093	-34756	+	NM_001220777 NM_078467	47404	+	NM_000389 TSC_hg19_v1_chr6_+_36646486 AK309512 NM_001220778 U09579	49624	+	TSC_hg19_v1_chr6_+_36646490 BC013967 AB209881 BC001935 BC000312 L25610 L26165 U03106 S67388 BC000275 L47232 L47233 AY008263	49678	+	AK304097|SRSF3|6428|serine/arginine-rich splicing factor 3##BC000914|SRSF3|6428|serine/arginine-rich splicing factor 3##BC069018|SRSF3|6428|serine/arginine-rich splicing factor 3##AF107405|SRSF3|6428|serine/arginine-rich splicing factor 3##AK312553|SRSF3|6428|serine/arginine-rich splicing factor 3##NM_003017|SRSF3|6428|serine/arginine-rich splicing factor 3##NM_001220777|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_078467|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_000389|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AK309512|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_001220778|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U09579|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC013967|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AB209881|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC001935|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000312|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L25610|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L26165|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U03106|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##S67388|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000275|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47232|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47233|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)	0.99887	0.0	
chr7	140396225	140396315	reg1004611.p1	5.633	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-23332	+	AB033103 TSC_hg19_v1_chr7_-_140340614	-55660	-	BC132875 BC144190 NM_015689	-93944	-	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	233	+	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	228237	-	AF151897 AK024776 NM_016071	318197	-	AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AB033103|DENND2A|27147|DENN/MADD domain containing 2A##BC132875|DENND2A|27147|DENN/MADD domain containing 2A##BC144190|DENND2A|27147|DENN/MADD domain containing 2A##NM_015689|DENND2A|27147|DENN/MADD domain containing 2A##AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33	0.981006	0.0	denovo_WM_7:-49:0.227	denovo_WM_7:-50:0.227	denovo_WM_7:-51:0.227	denovo_WM_7:-52:0.227
chr7	157095037	157095217	reg1004720.p2	5.633	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-71121	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-163444	+	TSC_hg19_v1_chr7_+_156931631 NM_014671	-163481	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	34584	+	TSC_hg19_v1_chr7_+_157647233 BC034557	552147	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1285326	-	D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##NM_014671|UBE3C|9690|ubiquitin protein ligase E3C##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2	0.0	0.0	
chr7	35814863	35814957	reg1013727.p2	5.633	+	TSC_hg19_v1_chr7_-_35734795 NM_022373	-80132	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	-80171	-	TSC_hg19_v1_chr7_-_35734533 BC005091	-80314	-	NM_001011553 NM_001242956 NM_001788 TSC_hg19_v1_chr7_+_35840766 BC107718 AK290545	25800	+	TSC_hg19_v1_chr7_+_35840828 AB073389 AK223225 AK223241 AK297883 AK298453 BC025987 BX571755 S72008 BC093640 BC093642	25923	+	DQ232879 TSC_hg19_v1_chr7_+_35840853 BC067264 AK300601 AB209677	25942	+	NM_022373|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##BC005091|HERPUD2|64224|HERPUD family member 2##NM_001011553|SEPT7|989|septin 7##NM_001242956|SEPT7|989|septin 7##NM_001788|SEPT7|989|septin 7##BC107718|SEPT7|989|septin 7##AK290545|SEPT7|989|septin 7##AB073389|SEPT7|989|septin 7##AK223225|SEPT7|989|septin 7##AK223241|SEPT7|989|septin 7##AK297883|SEPT7|989|septin 7##AK298453|SEPT7|989|septin 7##BC025987|SEPT7|989|septin 7##BX571755|SEPT7|989|septin 7##S72008|SEPT7|989|septin 7##BC093640|SEPT7|989|septin 7##BC093642|SEPT7|989|septin 7##DQ232879|SEPT7|989|septin 7##BC067264|SEPT7|989|septin 7##AK300601|SEPT7|989|septin 7##AB209677|SEPT7|989|septin 7	2.979137	0.0	denovo_WM_7:-8:0.470	denovo_WM_7:-10:0.301	denovo_WM_7:-35:0.441	denovo_WM_7:-36:0.378	denovo_WM_7:-52:0.976
chr10	3251694	3251793	reg1006767.p1	5.632	+	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-36738	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	-36773	-	BC045577 TSC_hg19_v1_chr10_-_3214936	-36818	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	575568	-	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	575766	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1616675	+	BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2	0.995241	0.0	
chr11	17373444	17373548	reg1006592.p1	5.632	+	TSC_hg19_v1_chr11_+_17373346 CR749521 NM_001202439 BX537685 BC136797 BC136800	-155	+	TSC_hg19_v1_chr11_+_17332454 BC172867	-41013	+	TSC_hg19_v1_chr11_+_17298285 EU039832 EU039833 NM_005013 X76732 BC111556 AF450266	-75183	+	BC064497 NM_000525	36709	-	BC040617 AK301550 NM_001166290 TSC_hg19_v1_chr11_-_17410958	37414	-	U63421 HM635782 TSC_hg19_v1_chr11_-_17498355 AK297560 AF087138 L78207 AB209084	124847	-	CR749521|B7H6|374383|B7 homolog 6##NM_001202439|B7H6|374383|B7 homolog 6##BX537685|B7H6|374383|B7 homolog 6##BC136797|B7H6|374383|B7 homolog 6##BC136800|B7H6|374383|B7 homolog 6##EU039832|NUCB2|4925|nucleobindin 2##EU039833|NUCB2|4925|nucleobindin 2##NM_005013|NUCB2|4925|nucleobindin 2##X76732|NUCB2|4925|nucleobindin 2##BC111556|NUCB2|4925|nucleobindin 2##AF450266|NUCB2|4925|nucleobindin 2##BC064497|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_000525|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##BC040617|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##AK301550|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_001166290|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##U63421|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##HM635782|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AK297560|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AF087138|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##L78207|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AB209084|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	0.0	0.0	
chr15	65077515	65077581	reg1004387.p2	5.632	+	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-9802	-	TSC_hg19_v1_chr15_-_64995461 BC047755 NM_002537	-82079	-	TSC_hg19_v1_chr15_-_64995415 AF057297 BC063577 BC073877 BC035493 BC092483	-82146	-	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	40287	-	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	56559	+	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	126541	+	BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC047755|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_002537|OAZ2|4947|ornithine decarboxylase antizyme 2##AF057297|OAZ2|4947|ornithine decarboxylase antizyme 2##BC063577|OAZ2|4947|ornithine decarboxylase antizyme 2##BC073877|OAZ2|4947|ornithine decarboxylase antizyme 2##BC035493|OAZ2|4947|ornithine decarboxylase antizyme 2##BC092483|OAZ2|4947|ornithine decarboxylase antizyme 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A	0.994582	0.0	
chr1	89594588	89594715	reg1007911.p1	5.632	+	M55543 AK226018 BC073163 AK057968 AK314325 BC022272 NM_004120	-2910	-	AK291783 M55542 AK298032 AK303893 AB208912 BC002666 NM_002053	-63685	-	JF927951 BC140837 BC144650 BC063819 CR936758 AK001823 BC017992 AK309096 AL136680 CR936755 NM_018284	-106171	-	AK096141 NM_207398	47071	-	AK304245 AB527149 AF288814 AK131094 AL832576 BC070055 BC017889 AK312417 BC008421 NM_052941	69920	-	AY358953 AK090479 AF328727 AF430643 TSC_hg19_v1_chr1_-_89738544 BC031639 AF430642 NM_001134486 NM_052942	143863	-	M55543|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK226018|GBP2|2634|guanylate binding protein 2, interferon-inducible##BC073163|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK057968|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK314325|GBP2|2634|guanylate binding protein 2, interferon-inducible##BC022272|GBP2|2634|guanylate binding protein 2, interferon-inducible##NM_004120|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK291783|GBP1|2633|guanylate binding protein 1, interferon-inducible##M55542|GBP1|2633|guanylate binding protein 1, interferon-inducible##AK298032|GBP1|2633|guanylate binding protein 1, interferon-inducible##AK303893|GBP1|2633|guanylate binding protein 1, interferon-inducible##AB208912|GBP1|2633|guanylate binding protein 1, interferon-inducible##BC002666|GBP1|2633|guanylate binding protein 1, interferon-inducible##NM_002053|GBP1|2633|guanylate binding protein 1, interferon-inducible##JF927951|GBP3|2635|guanylate binding protein 3##BC140837|GBP3|2635|guanylate binding protein 3##BC144650|GBP3|2635|guanylate binding protein 3##BC063819|GBP3|2635|guanylate binding protein 3##CR936758|GBP3|2635|guanylate binding protein 3##AK001823|GBP3|2635|guanylate binding protein 3##BC017992|GBP3|2635|guanylate binding protein 3##AK309096|GBP3|2635|guanylate binding protein 3##AL136680|GBP3|2635|guanylate binding protein 3##CR936755|GBP3|2635|guanylate binding protein 3##NM_018284|GBP3|2635|guanylate binding protein 3##AK096141|GBP7|388646|guanylate binding protein 7##NM_207398|GBP7|388646|guanylate binding protein 7##AK304245|GBP4|115361|guanylate binding protein 4##AF288814|GBP4|115361|guanylate binding protein 4##AK131094|GBP4|115361|guanylate binding protein 4##AL832576|GBP4|115361|guanylate binding protein 4##BC070055|GBP4|115361|guanylate binding protein 4##BC017889|GBP4|115361|guanylate binding protein 4##AK312417|GBP4|115361|guanylate binding protein 4##BC008421|GBP4|115361|guanylate binding protein 4##NM_052941|GBP4|115361|guanylate binding protein 4##AY358953|GBP5|115362|guanylate binding protein 5##AK090479|GBP5|115362|guanylate binding protein 5##AF328727|GBP5|115362|guanylate binding protein 5##AF430643|GBP5|115362|guanylate binding protein 5##BC031639|GBP5|115362|guanylate binding protein 5##AF430642|GBP5|115362|guanylate binding protein 5##NM_001134486|GBP5|115362|guanylate binding protein 5##NM_052942|GBP5|115362|guanylate binding protein 5	0.482252	0.0	denovo_WM_7:-40:0.235
chr6	24010601	24010689	reg1007503.p1	5.632	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	-1440920	+	X54394 X54393 GQ305133 M58594 NM_001163558	-1707598	-	BC015850 NM_000948	-1712916	-	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	115785	+	AF181722 NM_181337	346485	+	AF181721 NM_016356	347634	-	NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1##AF181721|DCDC2|51473|doublecortin domain containing 2##NM_016356|DCDC2|51473|doublecortin domain containing 2	1.030168	0.0	denovo_WM_7:-18:0.700	denovo_WM_7:-19:0.261
chr14	61736380	61736506	reg1009019.p2	5.630	+	TSC_hg19_v1_chr14_+_61447962 BX648332 BC110378 BC064429 BX248072 AF070578 AK303839	-288388	+	TSC_hg19_v1_chr14_+_61447932 BC050349	-288507	+	NM_001172702 NM_153811 AF543422 TSC_hg19_v1_chr14_+_61447920	-288566	+	AB464738 TSC_hg19_v1_chr14_-_61747887	11434	-	BC101726 BC113559 TSC_hg19_v1_chr14_-_61747937	11482	-	TSC_hg19_v1_chr14_-_61747957 AK091169 AX746825	11522	-	BX648332|SLC38A6|145389|solute carrier family 38, member 6##BC110378|SLC38A6|145389|solute carrier family 38, member 6##BC064429|SLC38A6|145389|solute carrier family 38, member 6##BX248072|SLC38A6|145389|solute carrier family 38, member 6##AF070578|SLC38A6|145389|solute carrier family 38, member 6##AK303839|SLC38A6|145389|solute carrier family 38, member 6##BC050349|SLC38A6|145389|solute carrier family 38, member 6##NM_001172702|SLC38A6|145389|solute carrier family 38, member 6##NM_153811|SLC38A6|145389|solute carrier family 38, member 6##AF543422|SLC38A6|145389|solute carrier family 38, member 6##BC101726|TMEM30B|161291|transmembrane protein 30B##BC113559|TMEM30B|161291|transmembrane protein 30B##AK091169|TMEM30B|161291|transmembrane protein 30B	0.0	0.960606	CTCF.p2:32:0.961
chr5	14415966	14416102	reg1008236.p1	5.630	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-272362	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-404164	-	AX800026 AY045575 NM_001369	-471446	-	TSC_hg19_v1_chr5_+_14488527 AK131423	72505	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	165866	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	165930	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	0.0	0.0	
chr2	47922671	47922775	reg1006621.p1	5.629	+	TSC_hg19_v1_chr2_-_47918421 D28393	-4304	-	AF287302 NM_022055 BC047749	-125240	-	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	-292406	+	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	87573	+	AK304140 AK315108 NM_025133	193128	-	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	210070	-	D28393|RPL18A|6142|ribosomal protein L18a##AF287302|KCNK12|56660|potassium channel, subfamily K, member 12##NM_022055|KCNK12|56660|potassium channel, subfamily K, member 12##BC047749|KCNK12|56660|potassium channel, subfamily K, member 12##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11	0.997227	0.0	
chr5	159876480	159876643	reg1008356.p1	5.629	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-27658	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-27707	+	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	-30456	-	AK025130 TSC_hg19_v1_chr5_-_160112393	235778	-	AB018258 AK295081 AK090832 AX746642 NM_025153	402570	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	1098565	-	BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK025130|ATP10B|23120|ATPase, class V, type 10B##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2	0.995984	0.0	denovo_WM_7:40:0.315	denovo_WM_7:41:0.315	denovo_WM_7:42:0.315
chr6	91078933	91079069	reg1008568.p1	5.629	+	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-72389	-	AJ271878 TSC_hg19_v1_chr6_-_91006556 NM_021813	-72490	-	AB527151 AF296766 NM_032602	-474815	+	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	217682	-	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	217837	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	3050182	-	AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AJ271878|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_021813|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7	0.0	0.0	
chr1	145991467	145991621	reg1006709.p2	5.628	+	NM_001097616	-107677	+	BT006679 DQ890650 DQ893830 AB528816 TSC_hg19_v1_chr1_-_145827047 BC003187 AK316371 BC146880 AF132947 U78723 BC067816 AB097024 AB097025 AK223223 AK299995 AK302266 AY358966 AK021758 AK297145 NM_001097612 NM_001097613	-164528	-	TSC_hg19_v1_chr1_+_145727712 AK313100 AK298269 BC006496 BC006518 AF012281	-263825	+	AF419617 NM_001101663	76700	-	BC136292 NM_183372 AL832622	91154	-	AJ224538 HQ257946 TSC_hg19_v1_chr1_-_146643798	652221	-	NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##BT006679|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##AK297145|GPR89A|653519|G protein-coupled receptor 89A##NM_001097612|GPR89A|653519|G protein-coupled receptor 89A##NM_001097613|GPR89A|653519|G protein-coupled receptor 89A##AK313100|PDZK1|5174|PDZ domain containing 1##AK298269|PDZK1|5174|PDZ domain containing 1##BC006496|PDZK1|5174|PDZ domain containing 1##BC006518|PDZK1|5174|PDZ domain containing 1##AF012281|PDZK1|5174|PDZ domain containing 1##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11##AL832622|NBPF24|728912|neuroblastoma breakpoint family, member 24##AJ224538|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##HQ257946|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit	0.99744	0.0	
chr1	20966750	20966923	reg1008300.p1	5.628	+	AK093117 AX747934 TSC_hg19_v1_chr1_+_20964439	-2410	+	TSC_hg19_v1_chr1_+_20959970 AB053323 NM_032409 AF316873 BC028215 DQ891033 DQ893330 DQ894212 DQ896646 AB384405	-6839	+	BC048284 NM_001785 AY634312 BC054036 TSC_hg19_v1_chr1_+_20915592 AJ000474 CU691080 S52873	-51304	+	TSC_hg19_v1_chr1_-_20987871 AB062391	21033	-	TSC_hg19_v1_chr1_-_20987882 CU678058 DQ891927 DQ895114	21052	-	AK296041 TSC_hg19_v1_chr1_-_20987897	21060	-	AB053323|PINK1|65018|PTEN induced putative kinase 1##NM_032409|PINK1|65018|PTEN induced putative kinase 1##AF316873|PINK1|65018|PTEN induced putative kinase 1##BC028215|PINK1|65018|PTEN induced putative kinase 1##DQ891033|PINK1|65018|PTEN induced putative kinase 1##DQ893330|PINK1|65018|PTEN induced putative kinase 1##DQ894212|PINK1|65018|PTEN induced putative kinase 1##DQ896646|PINK1|65018|PTEN induced putative kinase 1##BC048284|CDA|978|cytidine deaminase##NM_001785|CDA|978|cytidine deaminase##AY634312|CDA|978|cytidine deaminase##BC054036|CDA|978|cytidine deaminase##AJ000474|CDA|978|cytidine deaminase##S52873|CDA|978|cytidine deaminase##AB062391|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##DQ891927|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##DQ895114|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase##AK296041|DDOST|1650|dolichyl-diphosphooligosaccharide--protein glycosyltransferase	0.993891	0.774938	CTCF.p2:0:0.744	denovo_WM_7:60:0.855
chr5	80450627	80450783	reg1004201.p1	5.628	+	AF023130 AF181250 TSC_hg19_v1_chr5_+_80256561	-194146	+	TSC_hg19_v1_chr5_+_80256463 BC126112 BC136296 BC143870 NM_006909	-194223	+	TSC_hg19_v1_chr5_-_79950786 BC003584 BC071996 NM_000791	-499910	-	NM_001099735 NM_001099736 NM_001825 TSC_hg19_v1_chr5_+_80529140 AK313293 BC029140 AK122769	78443	+	TSC_hg19_v1_chr5_-_80597338 AK096014	146620	-	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	146667	-	AF023130|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##AF181250|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC126112|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC136296|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC143870|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##NM_006909|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC003584|DHFR|1719|dihydrofolate reductase##BC071996|DHFR|1719|dihydrofolate reductase##NM_000791|DHFR|1719|dihydrofolate reductase##NM_001099735|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##NM_001099736|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##NM_001825|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK313293|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##BC029140|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK122769|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK096014|LOC100131067|100131067|uncharacterized LOC100131067##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067	0.031331	0.0	
chr12	133276827	133277005	reg1007011.p2	5.627	+	TSC_hg19_v1_chr12_+_133264236 AF250136 NM_018663 BC073997 AY044439	-12712	+	TSC_hg19_v1_chr12_-_133264011 AF128542	-12895	-	TSC_hg19_v1_chr12_-_133263981 U49356 S60080 BC144561 L09561 NM_006231	-12976	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	10520	+	AK025933 TSC_hg19_v1_chr12_-_133306584	29642	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	61504	-	AF250136|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##NM_018663|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##BC073997|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AY044439|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AF128542|POLE|5426|polymerase (DNA directed), epsilon##U49356|POLE|5426|polymerase (DNA directed), epsilon##S60080|POLE|5426|polymerase (DNA directed), epsilon##BC144561|POLE|5426|polymerase (DNA directed), epsilon##L09561|POLE|5426|polymerase (DNA directed), epsilon##NM_006231|POLE|5426|polymerase (DNA directed), epsilon##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2	0.028975	0.0	
chr14	35844856	35844968	reg1007732.p1	5.627	+	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	-83269	+	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	-83341	+	TSC_hg19_v1_chr14_+_35591757 AK301931 BC050339 BC044580 BC001542 AK304066 BC032221 NM_014672 AB002389 BX161394 BX161487 AK303508	-253060	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	29012	-	AF260323 NM_032594 BC130377 BC130379 TSC_hg19_v1_chr14_+_36003369 AB037912 AK096639	158397	+	AB511280 BC150596 TSC_hg19_v1_chr14_-_36278252	433235	-	BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK301931|KIAA0391|9692|KIAA0391##BC044580|KIAA0391|9692|KIAA0391##BC001542|KIAA0391|9692|KIAA0391##AK304066|KIAA0391|9692|KIAA0391##BC032221|KIAA0391|9692|KIAA0391##NM_014672|KIAA0391|9692|KIAA0391##AB002389|KIAA0391|9692|KIAA0391##BX161394|KIAA0391|9692|KIAA0391##BX161487|KIAA0391|9692|KIAA0391##AK303508|KIAA0391|9692|KIAA0391##BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AF260323|INSM2|84684|insulinoma-associated 2##NM_032594|INSM2|84684|insulinoma-associated 2##BC130377|INSM2|84684|insulinoma-associated 2##BC130379|INSM2|84684|insulinoma-associated 2##AB037912|INSM2|84684|insulinoma-associated 2##AK096639|INSM2|84684|insulinoma-associated 2##AB511280|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BC150596|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)	0.998462	0.0	
chr15	74258276	74258383	reg1001258.p3	5.627	+	TSC_hg19_v1_chr15_+_74218979 DQ893331	-39288	+	TSC_hg19_v1_chr15_+_74218813 BC015090 L21186	-39514	+	TSC_hg19_v1_chr15_+_74218802 BC068542 AK303982 AK314222	-39528	+	AL109664 AF074953 AL109665 CR542089 DQ064605 AB587381 AK300799 AK222665 AK075244 Y16522 BC034379 BC065249 NM_004809 AF111800 AK302051 TSC_hg19_v1_chr15_-_74284672 AF156557	26274	-	TSC_hg19_v1_chr15_-_74286928 AK091531	28605	-	TSC_hg19_v1_chr15_+_74287096 NM_002675 NM_033238 NM_033239 NM_033240 NM_033244 NM_033246 NM_033247 NM_033249 NM_033250 X63131 AB209411 S50913 M73778 AF230401 AF230402 AF230403 AF230404 AF230405 AF230406 AF230407 AF230408 AF230409 AF230410 AF230411 BC000080 BC020994	28721	+	DQ893331|LOXL1|4016|lysyl oxidase-like 1##BC015090|LOXL1|4016|lysyl oxidase-like 1##L21186|LOXL1|4016|lysyl oxidase-like 1##BC068542|LOXL1|4016|lysyl oxidase-like 1##AK303982|LOXL1|4016|lysyl oxidase-like 1##AK314222|LOXL1|4016|lysyl oxidase-like 1##AL109664|STOML1|9399|stomatin (EPB72)-like 1##AF074953|STOML1|9399|stomatin (EPB72)-like 1##AL109665|STOML1|9399|stomatin (EPB72)-like 1##CR542089|STOML1|9399|stomatin (EPB72)-like 1##DQ064605|STOML1|9399|stomatin (EPB72)-like 1##AK300799|STOML1|9399|stomatin (EPB72)-like 1##AK222665|STOML1|9399|stomatin (EPB72)-like 1##AK075244|STOML1|9399|stomatin (EPB72)-like 1##Y16522|STOML1|9399|stomatin (EPB72)-like 1##BC034379|STOML1|9399|stomatin (EPB72)-like 1##BC065249|STOML1|9399|stomatin (EPB72)-like 1##NM_004809|STOML1|9399|stomatin (EPB72)-like 1##AF111800|STOML1|9399|stomatin (EPB72)-like 1##AK302051|STOML1|9399|stomatin (EPB72)-like 1##AF156557|STOML1|9399|stomatin (EPB72)-like 1##AK091531|STOML1|9399|stomatin (EPB72)-like 1##NM_002675|PML|5371|promyelocytic leukemia##NM_033238|PML|5371|promyelocytic leukemia##NM_033239|PML|5371|promyelocytic leukemia##NM_033240|PML|5371|promyelocytic leukemia##NM_033244|PML|5371|promyelocytic leukemia##NM_033246|PML|5371|promyelocytic leukemia##NM_033247|PML|5371|promyelocytic leukemia##NM_033249|PML|5371|promyelocytic leukemia##NM_033250|PML|5371|promyelocytic leukemia##X63131|PML|5371|promyelocytic leukemia##AB209411|PML|5371|promyelocytic leukemia##S50913|PML|5371|promyelocytic leukemia##M73778|PML|5371|promyelocytic leukemia##AF230401|PML|5371|promyelocytic leukemia##AF230402|PML|5371|promyelocytic leukemia##AF230403|PML|5371|promyelocytic leukemia##AF230404|PML|5371|promyelocytic leukemia##AF230405|PML|5371|promyelocytic leukemia##AF230406|PML|5371|promyelocytic leukemia##AF230407|PML|5371|promyelocytic leukemia##AF230408|PML|5371|promyelocytic leukemia##AF230409|PML|5371|promyelocytic leukemia##AF230410|PML|5371|promyelocytic leukemia##AF230411|PML|5371|promyelocytic leukemia##BC000080|PML|5371|promyelocytic leukemia##BC020994|PML|5371|promyelocytic leukemia	0.0	0.0	
chr17	11946226	11946292	reg1009181.p1	5.627	+	TSC_hg19_v1_chr17_+_11924150 BC036032 NM_003010 BC060764 AK131544 AK313053 U17743 AK294923 L36870 BC050386 AB590846 BT019676 CR536564	-22078	+	AK092656 AX747657 NM_144680 TSC_hg19_v1_chr17_-_11900782 AY491053 AK127908	-45506	-	NM_004662 X99947	-160039	+	NM_001146312 NM_153604 TSC_hg19_v1_chr17_+_12569210 AY764180	622950	+	AK128608 TSC_hg19_v1_chr17_+_12569334 AK292885	623062	+	TSC_hg19_v1_chr17_+_12569389 BC126307 BC143391 AF532596	623175	+	BC036032|MAP2K4|6416|mitogen-activated protein kinase kinase 4##NM_003010|MAP2K4|6416|mitogen-activated protein kinase kinase 4##BC060764|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK131544|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK313053|MAP2K4|6416|mitogen-activated protein kinase kinase 4##U17743|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK294923|MAP2K4|6416|mitogen-activated protein kinase kinase 4##L36870|MAP2K4|6416|mitogen-activated protein kinase kinase 4##BC050386|MAP2K4|6416|mitogen-activated protein kinase kinase 4##BT019676|MAP2K4|6416|mitogen-activated protein kinase kinase 4##CR536564|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK092656|ZNF18|7566|zinc finger protein 18##NM_144680|ZNF18|7566|zinc finger protein 18##AY491053|ZNF18|7566|zinc finger protein 18##AK127908|ZNF18|7566|zinc finger protein 18##NM_004662|DNAH9|1770|dynein, axonemal, heavy chain 9##X99947|DNAH9|1770|dynein, axonemal, heavy chain 9##NM_001146312|MYOCD|93649|myocardin##NM_153604|MYOCD|93649|myocardin##AY764180|MYOCD|93649|myocardin##AK128608|MYOCD|93649|myocardin##AK292885|MYOCD|93649|myocardin##BC126307|MYOCD|93649|myocardin##BC143391|MYOCD|93649|myocardin##AF532596|MYOCD|93649|myocardin	0.045776	0.0	
chr19	42612752	42612867	reg1007880.p1	5.627	+	TSC_hg19_v1_chr19_+_42580336 AF447880 AK027895 BC001184	-32443	+	TSC_hg19_v1_chr19_+_42580286 NM_022752	-32527	+	S40369 AJ249209 BC131717 NM_002088	-42871	-	M36718 X13809 BT007438 AB590941 TSC_hg19_v1_chr19_-_42636564 BC006101 M36653 NM_001207025 NM_001207026 NM_001247994 NM_002698 X53468	23782	-	TSC_hg19_v1_chr19_-_42721830 BC027930 NM_133328 AY125488 BC013372 AK307895 AK130203 AK075328	109030	-	TSC_hg19_v1_chr19_+_42724463 AK298895 AB075831 NM_133444	111655	+	AF447880|ZNF574|64763|zinc finger protein 574##AK027895|ZNF574|64763|zinc finger protein 574##BC001184|ZNF574|64763|zinc finger protein 574##NM_022752|ZNF574|64763|zinc finger protein 574##S40369|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##AJ249209|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC131717|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##NM_002088|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##M36718|POU2F2|5452|POU class 2 homeobox 2##X13809|POU2F2|5452|POU class 2 homeobox 2##BT007438|POU2F2|5452|POU class 2 homeobox 2##BC006101|POU2F2|5452|POU class 2 homeobox 2##M36653|POU2F2|5452|POU class 2 homeobox 2##NM_001207025|POU2F2|5452|POU class 2 homeobox 2##NM_001207026|POU2F2|5452|POU class 2 homeobox 2##NM_001247994|POU2F2|5452|POU class 2 homeobox 2##NM_002698|POU2F2|5452|POU class 2 homeobox 2##X53468|POU2F2|5452|POU class 2 homeobox 2##BC027930|DEDD2|162989|death effector domain containing 2##NM_133328|DEDD2|162989|death effector domain containing 2##AY125488|DEDD2|162989|death effector domain containing 2##BC013372|DEDD2|162989|death effector domain containing 2##AK307895|DEDD2|162989|death effector domain containing 2##AK130203|DEDD2|162989|death effector domain containing 2##AK075328|DEDD2|162989|death effector domain containing 2##AK298895|ZNF526|116115|zinc finger protein 526##AB075831|ZNF526|116115|zinc finger protein 526##NM_133444|ZNF526|116115|zinc finger protein 526	0.961531	0.09077	denovo_WM_7:-61:0.613
chr1	206677594	206677774	reg1009507.p2	5.626	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	-33839	+	TSC_hg19_v1_chr1_+_206643818 AK093798 AK310737 AY660028	-33878	+	NM_001193321 NM_001193322 NM_014002	-34099	+	TSC_hg19_v1_chr1_+_206680860 AK289861	3177	+	TSC_hg19_v1_chr1_+_206680863 AK291268 AY062002 AY062003 BC004270 BC007203 NM_182663 NM_182664 AB209145 DQ892961 DQ896208	3217	+	TSC_hg19_v1_chr1_+_206730491 NM_182665 AF445801	52791	+	BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK093798|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK310737|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AY660028|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193321|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193322|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_014002|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK289861|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK291268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062002|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062003|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC004270|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC007203|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182663|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182664|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AB209145|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ892961|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ896208|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182665|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AF445801|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5	0.0	0.0	
chr12	12849778	12849958	reg1000618.p3	5.626	+	AK096388 NM_006143	-748	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-84985	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-85073	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	20258	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	28988	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	88709	+	AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1	0.0	0.0	
chr12	916439	916619	reg1005797.p1	5.626	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-53773	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	-54373	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-143814	-	BC013629 TSC_hg19_v1_chr12_+_1017145	100553	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	142297	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	183923	+	AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1	1.89462	0.0	denovo_WM_7:55:0.903	denovo_WM_7:-58:0.244	denovo_WM_7:-59:0.244	denovo_WM_7:-60:0.244	denovo_WM_7:-61:0.244
chr3	93789220	93789399	reg1009283.p1	5.626	+	AK122674 NM_001195643	-7243	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-7465	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-7565	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	2744121	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	3369162	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	3694291	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.334714	0.0	denovo_WM_7:5:0.335
chrX	6656908	6657033	reg1008016.p1	5.626	+	AF167078 AF167079 NM_016379	-203812	-	AK055471 BC034018 NM_181332	-510290	-	AB033086 AF376803 AX773938 NM_020742	-511083	-	TSC_hg19_v1_chrX_+_7065865 AM072428 DQ851172 FM209047	408981	+	M86934 AK300740 BC012494 TSC_hg19_v1_chrX_-_7066203 AK307088 AK223405 AK300985 AK313155 NM_001135565 NM_001178135 NM_001178136 NM_012080	409222	-	NM_000351 M16505 J04964 AK314034	480531	+	AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AM072428|STS|412|steroid sulfatase (microsomal), isozyme S##FM209047|STS|412|steroid sulfatase (microsomal), isozyme S##M86934|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300740|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##BC012494|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK307088|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK223405|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300985|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK313155|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001135565|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178135|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178136|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_012080|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_000351|STS|412|steroid sulfatase (microsomal), isozyme S##M16505|STS|412|steroid sulfatase (microsomal), isozyme S##J04964|STS|412|steroid sulfatase (microsomal), isozyme S##AK314034|STS|412|steroid sulfatase (microsomal), isozyme S	0.0	0.0	
chrX	70872468	70872605	reg1009901.p1	5.626	+	AY242128 CU689880 DQ892460 DQ895673 BC034403 AF469635 AK313679 NM_001142797 NM_001504 X95876	-34204	-	NM_052957	-74663	+	TSC_hg19_v1_chrX_+_70765496 AL050366	-107014	+	NM_001145139 NM_001145140	65598	-	NM_001145139 NM_001145140	110603	+	TSC_hg19_v1_chrX_+_71130694 NM_001013627	258242	+	AY242128|CXCR3|2833|chemokine (C-X-C motif) receptor 3##DQ892460|CXCR3|2833|chemokine (C-X-C motif) receptor 3##DQ895673|CXCR3|2833|chemokine (C-X-C motif) receptor 3##BC034403|CXCR3|2833|chemokine (C-X-C motif) receptor 3##AF469635|CXCR3|2833|chemokine (C-X-C motif) receptor 3##AK313679|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_001142797|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_001504|CXCR3|2833|chemokine (C-X-C motif) receptor 3##X95876|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_052957|ACRC|93953|acidic repeat containing##AL050366|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001013627|NHSL2|340527|NHS-like 2	0.045214	0.484401	CTCF.p2:-22:0.484
chr12	111011904	111012076	reg1001702.p1	5.625	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-71915	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-72080	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-105321	+	TSC_hg19_v1_chr12_-_111020755 AY357944	8803	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	9080	-	AK124744 TSC_hg19_v1_chr12_-_111021124	9136	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	1.997599	0.0	denovo_WM_7:-17:0.381	denovo_WM_7:-18:0.289	denovo_WM_7:-34:0.276	denovo_WM_7:-35:0.367
chr2	38953185	38953260	reg1000831.p1	5.625	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-59967	+	NM_138801 TSC_hg19_v1_chr2_+_38893054	-60170	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-123081	-	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	25294	-	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	52133	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	149806	-	BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	0.0	0.0	
chr19	863872	864044	reg1009396.p2	5.624	+	BC034529 BC040146 TSC_hg19_v1_chr19_+_860648 CR536575	-3317	+	TSC_hg19_v1_chr19_+_859675 AB590861 AJ313463 DQ884409 M84526 BC051001	-4263	+	TSC_hg19_v1_chr19_+_859663 BC057807 AK300963 NM_001928	-4297	+	TSC_hg19_v1_chr19_-_893188 BC004554 BC011841 BC017282 AF106934	29241	-	TSC_hg19_v1_chr19_-_893218 NM_005481	29259	-	TSC_hg19_v1_chr19_-_913199 BC012775	49239	-	BC034529|CFD|1675|complement factor D (adipsin)##BC040146|CFD|1675|complement factor D (adipsin)##CR536575|CFD|1675|complement factor D (adipsin)##AJ313463|CFD|1675|complement factor D (adipsin)##DQ884409|CFD|1675|complement factor D (adipsin)##M84526|CFD|1675|complement factor D (adipsin)##BC051001|CFD|1675|complement factor D (adipsin)##BC057807|CFD|1675|complement factor D (adipsin)##AK300963|CFD|1675|complement factor D (adipsin)##NM_001928|CFD|1675|complement factor D (adipsin)##BC004554|MED16|10025|mediator complex subunit 16##BC011841|MED16|10025|mediator complex subunit 16##BC017282|MED16|10025|mediator complex subunit 16##AF106934|MED16|10025|mediator complex subunit 16##NM_005481|MED16|10025|mediator complex subunit 16##BC012775|R3HDM4|91300|R3H domain containing 4	0.012402	0.0	
chr4	10734134	10734314	reg1005913.p1	5.624	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-47823	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-275214	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-615688	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	696308	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2751727	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2751751	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.0	0.0	
chr12	751217	751297	reg1007272.p2	5.623	+	AB089940 NM_173593	-181715	+	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	-240476	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-252655	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	921	+	TSC_hg19_v1_chr12_-_752800 AK298043	1562	-	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	21458	-	AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2	0.0	0.0	
chr16	29388273	29388419	reg1006545.p2	5.623	+	TSC_hg19_v1_chr16_+_29086310 BC042920 AK225670 AK298442 AK301253	-302041	+	AK307342 NM_001014987 NM_001014988 NM_014387 TSC_hg19_v1_chr16_+_28996403 AJ223280	-391948	+	BC011563 NM_001014989	-392200	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	77505	+	BC022832 NM_001031827 NM_001039182	77938	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	82880	+	AK225670|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK298442|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK301253|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK307342|LAT|27040|linker for activation of T cells##NM_001014987|LAT|27040|linker for activation of T cells##NM_001014988|LAT|27040|linker for activation of T cells##NM_014387|LAT|27040|linker for activation of T cells##AJ223280|LAT|27040|linker for activation of T cells##BC011563|LAT|27040|linker for activation of T cells##NM_001014989|LAT|27040|linker for activation of T cells##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	0.996952	0.0	
chr3	116736141	116736320	reg1005384.p1	5.623	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-571857	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-571899	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-1393811	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2017303	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	2017453	-	AK097667 NM_152538 AK292387	2128667	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	0.0	0.0	
chr10	86088860	86088980	reg1007401.p1	5.622	+	TSC_hg19_v1_chr10_+_86088344 NM_018999 AK298966 BC030528	-526	+	BX641033 NM_001012720 NM_001012722 NM_002921 U14910 BC011349 BC008094 BC042536 CU675929 DQ892074 DQ895267	-84093	+	AB463829 AB031547 NM_015613 DQ426882 DQ426881	-87653	-	AB032954 TSC_hg19_v1_chr10_+_86131668	42698	+	TSC_hg19_v1_chr10_+_86184685 AK294321	95775	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	2037343	-	NM_018999|FAM190B|54462|family with sequence similarity 190, member B##AK298966|FAM190B|54462|family with sequence similarity 190, member B##BC030528|FAM190B|54462|family with sequence similarity 190, member B##BX641033|RGR|5995|retinal G protein coupled receptor##NM_001012720|RGR|5995|retinal G protein coupled receptor##NM_001012722|RGR|5995|retinal G protein coupled receptor##NM_002921|RGR|5995|retinal G protein coupled receptor##U14910|RGR|5995|retinal G protein coupled receptor##BC011349|RGR|5995|retinal G protein coupled receptor##BC008094|RGR|5995|retinal G protein coupled receptor##BC042536|RGR|5995|retinal G protein coupled receptor##DQ892074|RGR|5995|retinal G protein coupled receptor##DQ895267|RGR|5995|retinal G protein coupled receptor##AB031547|LRIT1|26103|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1##NM_015613|LRIT1|26103|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1	0.98614	0.0	denovo_WM_7:22:0.960
chr1	249161335	249161449	reg1006166.p2	5.622	+	TSC_hg19_v1_chr1_-_249153285 NM_001193328 NM_017865	-8090	-	AK309421 AL133100 TSC_hg19_v1_chr1_-_249153150 AK302187 NM_001136036 AK001070 AK298899 BC002948 AK000538 AK225535	-8304	-	TSC_hg19_v1_chr1_+_249132593 BC068506 BC008872	-28746	+	TSC_hg19_v1_chr1_+_249200433 AK123219 BC063785 NM_001017434 NM_170725 BX647065 AK298248	39031	+	None	None	None	None	None	None	NM_001193328|ZNF692|55657|zinc finger protein 692##NM_017865|ZNF692|55657|zinc finger protein 692##AK309421|ZNF692|55657|zinc finger protein 692##AL133100|ZNF692|55657|zinc finger protein 692##AK302187|ZNF692|55657|zinc finger protein 692##NM_001136036|ZNF692|55657|zinc finger protein 692##AK001070|ZNF692|55657|zinc finger protein 692##AK298899|ZNF692|55657|zinc finger protein 692##BC002948|ZNF692|55657|zinc finger protein 692##AK000538|ZNF692|55657|zinc finger protein 692##AK225535|ZNF692|55657|zinc finger protein 692##BC068506|ZNF672|79894|zinc finger protein 672##BC008872|ZNF672|79894|zinc finger protein 672##AK123219|PGBD2|267002|piggyBac transposable element derived 2##BC063785|PGBD2|267002|piggyBac transposable element derived 2##NM_001017434|PGBD2|267002|piggyBac transposable element derived 2##NM_170725|PGBD2|267002|piggyBac transposable element derived 2##BX647065|PGBD2|267002|piggyBac transposable element derived 2##AK298248|PGBD2|267002|piggyBac transposable element derived 2	2.978264	0.0	denovo_WM_7:-63:0.248	denovo_WM_7:-64:0.203
chr1	61314380	61314510	reg1007311.p2	5.622	+	BC027878 AK124828 NM_152377	-775012	-	BC032594 TSC_hg19_v1_chr1_-_60392478	-921976	-	AF144566 CU689440 DQ890862 DQ894017 AB528452 AB080265 NM_000775 U37143 AK315387 TSC_hg19_v1_chr1_-_60392444	-922060	-	AK092769 TSC_hg19_v1_chr1_+_61542908	228411	+	TSC_hg19_v1_chr1_+_61542928 AK299289 NM_001145511	228491	+	TSC_hg19_v1_chr1_+_61547427 AK299579 NM_001145512	233015	+	BC027878|C1orf87|127795|chromosome 1 open reading frame 87##AK124828|C1orf87|127795|chromosome 1 open reading frame 87##NM_152377|C1orf87|127795|chromosome 1 open reading frame 87##BC032594|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AF144566|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##DQ890862|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##DQ894017|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AB080265|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##NM_000775|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##U37143|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AK315387|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AK299289|NFIA|4774|nuclear factor I/A##NM_001145511|NFIA|4774|nuclear factor I/A##AK299579|NFIA|4774|nuclear factor I/A##NM_001145512|NFIA|4774|nuclear factor I/A	0.997756	0.604426	CTCF.p2:2:0.604	denovo_WM_7:-65:0.819
chr17	57909447	57909613	reg1007597.p2	5.622	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-124457	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-124495	+	BC009758 TSC_hg19_v1_chr17_+_57785014 AK024969	-124514	+	TSC_hg19_v1_chr17_+_57915291 AK310806	5776	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	60661	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	60932	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##BC009758|VMP1|81671|vacuole membrane protein 1##AK024969|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	0.999356	0.0	
chr5	108246901	108247077	reg1007443.p2	5.622	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-162317	+	AK293376 J03358 NM_005246 AK296874	-163427	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-183009	-	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	498632	-	TSC_hg19_v1_chr5_+_109025072 BC031659	778075	+	TSC_hg19_v1_chr5_+_109025096 BC111062	778108	+	AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.0	0.0	
chr12	42677902	42678047	reg1000710.p1	5.621	+	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-45803	-	CU691510 EU446625 EU446756 AB527838 TSC_hg19_v1_chr12_-_42632024 BC037777 AK127531 AK291355 AK296191 AK294260 NM_001190977	-45939	-	TSC_hg19_v1_chr12_-_42538503 AK125141 NM_001099650 NM_173601 BC030023	-139395	-	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	41901	-	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	42004	+	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	199442	-	NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##EU446625|YAF2|10138|YY1 associated factor 2##EU446756|YAF2|10138|YY1 associated factor 2##BC037777|YAF2|10138|YY1 associated factor 2##AK127531|YAF2|10138|YY1 associated factor 2##AK291355|YAF2|10138|YY1 associated factor 2##AK296191|YAF2|10138|YY1 associated factor 2##AK294260|YAF2|10138|YY1 associated factor 2##NM_001190977|YAF2|10138|YY1 associated factor 2##AK125141|GXYLT1|283464|glucoside xylosyltransferase 1##NM_001099650|GXYLT1|283464|glucoside xylosyltransferase 1##NM_173601|GXYLT1|283464|glucoside xylosyltransferase 1##BC030023|GXYLT1|283464|glucoside xylosyltransferase 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)	0.0	0.0	
chr15	45016778	45016958	reg1000427.p2	5.621	+	TSC_hg19_v1_chr15_+_45003710 NM_004048 AK303560 AK315776 S82297 S82300 S54761 BC032589 BC064910 X07621 AY007153 AB021288 AB463439 AY187687 CR457066 DQ839493 DQ839494 DQ884406 DQ890551 DQ893711 V00567	-13147	+	AK130783 TSC_hg19_v1_chr15_-_45003540	-13322	-	BC036924 NM_001145112	-47783	-	AK311550 TSC_hg19_v1_chr15_+_45021275 DQ232883	4385	+	BC031266 TSC_hg19_v1_chr15_+_45021331	4463	+	NM_080745 NM_182985	11691	+	NM_004048|B2M|567|beta-2-microglobulin##AK303560|B2M|567|beta-2-microglobulin##AK315776|B2M|567|beta-2-microglobulin##S82297|B2M|567|beta-2-microglobulin##S82300|B2M|567|beta-2-microglobulin##S54761|B2M|567|beta-2-microglobulin##BC032589|B2M|567|beta-2-microglobulin##BC064910|B2M|567|beta-2-microglobulin##X07621|B2M|567|beta-2-microglobulin##AY007153|B2M|567|beta-2-microglobulin##AB021288|B2M|567|beta-2-microglobulin##AY187687|B2M|567|beta-2-microglobulin##CR457066|B2M|567|beta-2-microglobulin##DQ839493|B2M|567|beta-2-microglobulin##DQ839494|B2M|567|beta-2-microglobulin##DQ884406|B2M|567|beta-2-microglobulin##DQ890551|B2M|567|beta-2-microglobulin##DQ893711|B2M|567|beta-2-microglobulin##V00567|B2M|567|beta-2-microglobulin##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##DQ232883|TRIM69|140691|tripartite motif containing 69##BC031266|TRIM69|140691|tripartite motif containing 69##NM_080745|TRIM69|140691|tripartite motif containing 69##NM_182985|TRIM69|140691|tripartite motif containing 69	0.0	0.0	
chr17	58399156	58399322	reg1008014.p1	5.621	+	TSC_hg19_v1_chr17_+_58227333 BC069649 M83670 BC074768 CR541766 CU691238	-171877	+	TSC_hg19_v1_chr17_+_58227302 BC057792 NM_000717 AK289715 AK298710	-171949	+	TSC_hg19_v1_chr17_-_58213006 AK311448	-186228	-	CU691084 TSC_hg19_v1_chr17_-_58469313 BC054344	70079	-	TSC_hg19_v1_chr17_-_58469447 AF533230	70219	-	TSC_hg19_v1_chr17_-_58469580 NM_032582 AK057301	70433	-	BC069649|CA4|762|carbonic anhydrase IV##M83670|CA4|762|carbonic anhydrase IV##BC074768|CA4|762|carbonic anhydrase IV##CR541766|CA4|762|carbonic anhydrase IV##BC057792|CA4|762|carbonic anhydrase IV##NM_000717|CA4|762|carbonic anhydrase IV##AK289715|CA4|762|carbonic anhydrase IV##AK298710|CA4|762|carbonic anhydrase IV##BC054344|USP32|84669|ubiquitin specific peptidase 32##AF533230|USP32|84669|ubiquitin specific peptidase 32##NM_032582|USP32|84669|ubiquitin specific peptidase 32##AK057301|USP32|84669|ubiquitin specific peptidase 32	0.998693	0.0	denovo_WM_7:0:0.528	denovo_WM_7:1:0.471
chr13	79998358	79998508	reg1009018.p2	5.620	+	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	-17982	+	BC030806 TSC_hg19_v1_chr13_-_79980382	-18050	-	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	-18479	-	TSC_hg19_v1_chr13_+_80055257 NM_001161407 NM_019080 AB097019 AB097028 AB097029	56838	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	56989	+	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	57122	+	AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC030806|RBM26|64062|RNA binding motif protein 26##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##NM_001161407|NDFIP2|54602|Nedd4 family interacting protein 2##NM_019080|NDFIP2|54602|Nedd4 family interacting protein 2##AB097019|NDFIP2|54602|Nedd4 family interacting protein 2##AB097028|NDFIP2|54602|Nedd4 family interacting protein 2##AB097029|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2	1.205397	0.876793	denovo_WM_7:47:0.276	denovo_WM_7:48:0.711	CTCF.p2:-54:0.877
chr14	104102088	104102233	reg1006482.p1	5.620	+	TSC_hg19_v1_chr14_+_104095547 NM_001130107 NM_005552 NM_182923 AK294508 BC008881 L04733 AF527736 AY180164	-6509	+	TSC_hg19_v1_chr14_+_104029325 AK299527 NM_032374 AK223092 AK223103 BC007412	-72849	+	TSC_hg19_v1_chr14_-_104028984 AB020680 NM_001015048	-73099	-	AK124498 TSC_hg19_v1_chr14_-_104178577	76348	-	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	79623	-	TSC_hg19_v1_chr14_+_104182144 NM_001198953 NM_024071 BC005999 AK057816 BC001130 AY395756 AK290519 BX248261	79956	+	NM_001130107|KLC1|3831|kinesin light chain 1##NM_005552|KLC1|3831|kinesin light chain 1##NM_182923|KLC1|3831|kinesin light chain 1##AK294508|KLC1|3831|kinesin light chain 1##BC008881|KLC1|3831|kinesin light chain 1##L04733|KLC1|3831|kinesin light chain 1##AF527736|KLC1|3831|kinesin light chain 1##AY180164|KLC1|3831|kinesin light chain 1##NM_032374|APOPT1|84334|apoptogenic 1##AK223092|APOPT1|84334|apoptogenic 1##AK223103|APOPT1|84334|apoptogenic 1##BC007412|APOPT1|84334|apoptogenic 1##AB020680|BAG5|9529|BCL2-associated athanogene 5##NM_001015048|BAG5|9529|BCL2-associated athanogene 5##AK124498|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001198953|ZFYVE21|79038|zinc finger, FYVE domain containing 21##NM_024071|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC005999|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK057816|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC001130|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AY395756|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK290519|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BX248261|ZFYVE21|79038|zinc finger, FYVE domain containing 21	0.998868	0.0	denovo_WM_7:-59:0.326	denovo_WM_7:-61:0.559
chr8	81070788	81070910	reg1007648.p1	5.620	+	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	-77820	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	-128347	-	AF311883 BT020065 AB489173 CU674904 AF151522 AF176422 AJ272214 BC001873 AK074641 AK313271 AF232239 TSC_hg19_v1_chr8_-_80680006 AK092437 AK226041 AF254637 NM_001040708 NM_012258	-390852	-	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	12921	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	327635	+	AK131274 NM_001033723	716166	-	AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AF311883|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT020065|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF151522|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF176422|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AJ272214|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BC001873|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK074641|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK313271|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF232239|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK092437|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK226041|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF254637|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_001040708|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_012258|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704	0.967744	0.0	denovo_WM_7:36:0.837
chr9	112888001	112888158	reg1008590.p1	5.620	+	NM_001136562 AK300427	-287	+	TSC_hg19_v1_chr9_+_112810975 AK057098 AK304311	-77116	+	BC146863 BC171800 NM_001004065 NM_001198656 TSC_hg19_v1_chr9_+_112810942	-77170	+	NM_001012993	82333	-	AF065241 AF276919 CR407665 AF313911 AY004872 AF085844 BC003377 J04026 BC054866 TSC_hg19_v1_chr9_-_113018788 X77584	130673	-	TSC_hg19_v1_chr9_-_113018817 BX647247 D28376 AK289508	130746	-	NM_001136562|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK300427|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK057098|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK304311|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC146863|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC171800|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001004065|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001198656|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001012993|C9orf152|401546|chromosome 9 open reading frame 152##AF065241|TXN|7295|thioredoxin##AF276919|TXN|7295|thioredoxin##CR407665|TXN|7295|thioredoxin##AF313911|TXN|7295|thioredoxin##AY004872|TXN|7295|thioredoxin##AF085844|TXN|7295|thioredoxin##BC003377|TXN|7295|thioredoxin##J04026|TXN|7295|thioredoxin##BC054866|TXN|7295|thioredoxin##X77584|TXN|7295|thioredoxin##BX647247|TXN|7295|thioredoxin##D28376|TXN|7295|thioredoxin##AK289508|TXN|7295|thioredoxin	0.997087	0.0	denovo_WM_7:-13:0.826
chr9	184750	184855	reg1008517.p1	5.620	+	AY295766 CU675219 HQ258394 AK315855 BC132759 AK297292 TSC_hg19_v1_chr9_-_179017 AY320414 BC009573 AF257330 AY343911 BC013432 AK290648 BC005996 NM_001145355 NM_001145356 NM_018491	-5809	-	BC089432 NM_207305	-66386	-	AK289708 NM_182905	-155064	-	TSC_hg19_v1_chr9_+_214847 BC043265	30029	+	TSC_hg19_v1_chr9_+_214864 AB191037 NM_203447	30060	+	AK293353 TSC_hg19_v1_chr9_+_214867	30077	+	AY295766|CBWD1|55871|COBW domain containing 1##HQ258394|CBWD1|55871|COBW domain containing 1##AK315855|CBWD1|55871|COBW domain containing 1##BC132759|CBWD1|55871|COBW domain containing 1##AK297292|CBWD1|55871|COBW domain containing 1##AY320414|CBWD1|55871|COBW domain containing 1##BC009573|CBWD1|55871|COBW domain containing 1##AF257330|CBWD1|55871|COBW domain containing 1##AY343911|CBWD1|55871|COBW domain containing 1##BC013432|CBWD1|55871|COBW domain containing 1##AK290648|CBWD1|55871|COBW domain containing 1##BC005996|CBWD1|55871|COBW domain containing 1##NM_001145355|CBWD1|55871|COBW domain containing 1##NM_001145356|CBWD1|55871|COBW domain containing 1##NM_018491|CBWD1|55871|COBW domain containing 1##BC089432|FOXD4|2298|forkhead box D4##NM_207305|FOXD4|2298|forkhead box D4##AK289708|WASH1|100287171|WAS protein family homolog 1##NM_182905|WASH1|100287171|WAS protein family homolog 1##BC043265|DOCK8|81704|dedicator of cytokinesis 8##AB191037|DOCK8|81704|dedicator of cytokinesis 8##NM_203447|DOCK8|81704|dedicator of cytokinesis 8##AK293353|DOCK8|81704|dedicator of cytokinesis 8	0.494106	0.0	denovo_WM_7:-22:0.452
chr1	57297726	57297906	reg1008221.p1	5.619	+	AK125198 NM_001004303 TSC_hg19_v1_chr1_-_57285379	-12443	-	TSC_hg19_v1_chr1_+_57110986 AK314011 NM_006252 U06454 BC069680 BC069740 BC069823 EF056019	-186914	+	TSC_hg19_v1_chr1_-_57045237 NM_003713	-252571	-	NM_000562 TSC_hg19_v1_chr1_+_57320466 AK309596 BC020702 BC132911 BC132913 HQ258328	22692	+	AB591028 HQ258464 BC130575 M16973 AK292740 AK313382 TSC_hg19_v1_chr1_-_57431689 BC020701 NM_000066 AK298425 AK316209 AK298444	133900	-	TSC_hg19_v1_chr1_-_57888785 AK313144	591012	-	AK125198|C1orf168|199920|chromosome 1 open reading frame 168##NM_001004303|C1orf168|199920|chromosome 1 open reading frame 168##AK314011|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##NM_006252|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##U06454|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069680|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069740|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##BC069823|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##EF056019|PRKAA2|5563|protein kinase, AMP-activated, alpha 2 catalytic subunit##NM_003713|PPAP2B|8613|phosphatidic acid phosphatase type 2B##NM_000562|C8A|731|complement component 8, alpha polypeptide##AK309596|C8A|731|complement component 8, alpha polypeptide##BC020702|C8A|731|complement component 8, alpha polypeptide##BC132911|C8A|731|complement component 8, alpha polypeptide##BC132913|C8A|731|complement component 8, alpha polypeptide##HQ258328|C8A|731|complement component 8, alpha polypeptide##HQ258464|C8B|732|complement component 8, beta polypeptide##BC130575|C8B|732|complement component 8, beta polypeptide##M16973|C8B|732|complement component 8, beta polypeptide##AK292740|C8B|732|complement component 8, beta polypeptide##AK313382|C8B|732|complement component 8, beta polypeptide##BC020701|C8B|732|complement component 8, beta polypeptide##NM_000066|C8B|732|complement component 8, beta polypeptide##AK298425|C8B|732|complement component 8, beta polypeptide##AK316209|C8B|732|complement component 8, beta polypeptide##AK298444|C8B|732|complement component 8, beta polypeptide##AK313144|DAB1|1600|disabled homolog 1 (Drosophila)	0.145918	0.932709	CTCF.p2:-74:0.933
chr6	74320342	74320434	reg1006608.p1	5.619	+	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-89642	-	TSC_hg19_v1_chr6_-_74230163 AY043301	-90218	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	-91219	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	43242	-	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	43392	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	85177	+	BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule	0.267453	0.915809	CTCF.p2:-20:0.916
chr8	29348065	29348245	reg1004072.p2	5.619	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-140085	-	AL137704 NM_057158	-141834	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-227541	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	592319	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	592417	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	604788	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.0	0.0	
chr16	10975113	10975246	reg1007388.p1	5.618	+	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	-4067	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-62631	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-137475	+	BC071683 TSC_hg19_v1_chr16_-_11036171	60987	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	61056	-	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	63264	+	AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A	0.826747	0.0	denovo_WM_7:-16:0.232	denovo_WM_7:-19:0.536
chr17	25906953	25907075	reg1005545.p2	5.618	+	BC035488 BC042106 NM_014238	-107985	+	TSC_hg19_v1_chr17_+_25621147 AF069313 AF240696 BC021110 AF112205 AF106683 AF072880 AB463346 AM393409 AM393665 CU676828	-285733	+	AL110243 NM_015626 NM_134265 AK307114 TSC_hg19_v1_chr17_+_25621139 AL110269 AK074917 AK294516 AK300262 BC048007 AK222576	-285892	+	TSC_hg19_v1_chr17_+_25958181 NM_002308 NM_009587	51154	+	TSC_hg19_v1_chr17_+_25958213 AB006782 AK223232	51189	+	TSC_hg19_v1_chr17_+_25958238 AB005894 AK301624 BC110340 AK296031	51214	+	BC035488|KSR1|8844|kinase suppressor of ras 1##BC042106|KSR1|8844|kinase suppressor of ras 1##NM_014238|KSR1|8844|kinase suppressor of ras 1##AF069313|WSB1|26118|WD repeat and SOCS box containing 1##AF240696|WSB1|26118|WD repeat and SOCS box containing 1##BC021110|WSB1|26118|WD repeat and SOCS box containing 1##AF112205|WSB1|26118|WD repeat and SOCS box containing 1##AF106683|WSB1|26118|WD repeat and SOCS box containing 1##AF072880|WSB1|26118|WD repeat and SOCS box containing 1##AM393409|WSB1|26118|WD repeat and SOCS box containing 1##AM393665|WSB1|26118|WD repeat and SOCS box containing 1##AL110243|WSB1|26118|WD repeat and SOCS box containing 1##NM_015626|WSB1|26118|WD repeat and SOCS box containing 1##NM_134265|WSB1|26118|WD repeat and SOCS box containing 1##AK307114|WSB1|26118|WD repeat and SOCS box containing 1##AL110269|WSB1|26118|WD repeat and SOCS box containing 1##AK074917|WSB1|26118|WD repeat and SOCS box containing 1##AK294516|WSB1|26118|WD repeat and SOCS box containing 1##AK300262|WSB1|26118|WD repeat and SOCS box containing 1##BC048007|WSB1|26118|WD repeat and SOCS box containing 1##AK222576|WSB1|26118|WD repeat and SOCS box containing 1##NM_002308|LGALS9|3965|lectin, galactoside-binding, soluble, 9##NM_009587|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB006782|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK223232|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB005894|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK301624|LGALS9|3965|lectin, galactoside-binding, soluble, 9##BC110340|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK296031|LGALS9|3965|lectin, galactoside-binding, soluble, 9	1.998042	0.0	denovo_WM_7:-83:0.366	denovo_WM_7:-84:0.274	denovo_WM_7:-100:0.291	denovo_WM_7:-101:0.382
chr19	46853049	46853158	reg1005924.p1	5.618	+	TSC_hg19_v1_chr19_+_46850348 AB527518 AK293402 AK297095 BT007275 BC000750 BC001831 X89416 U25174	-2744	+	TSC_hg19_v1_chr19_+_46850343 NM_001204284 NM_006247 BC001970 AK223222 AK312683	-2809	+	AK021881 TSC_hg19_v1_chr19_+_46844054	-9095	+	AK297668 AL136609 JN703457 NM_032040	63768	-	AL834344 TSC_hg19_v1_chr19_-_46974751 AK290218 BC051688	121619	-	TSC_hg19_v1_chr19_-_46974789 BC032508 NM_001103149 NM_018215	121702	-	AK293402|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297095|PPP5C|5536|protein phosphatase 5, catalytic subunit##BT007275|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC000750|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001831|PPP5C|5536|protein phosphatase 5, catalytic subunit##X89416|PPP5C|5536|protein phosphatase 5, catalytic subunit##U25174|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_001204284|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_006247|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001970|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK223222|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK312683|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK021881|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK297668|CCDC8|83987|coiled-coil domain containing 8##AL136609|CCDC8|83987|coiled-coil domain containing 8##JN703457|CCDC8|83987|coiled-coil domain containing 8##NM_032040|CCDC8|83987|coiled-coil domain containing 8##AL834344|PNMAL1|55228|PNMA-like 1##AK290218|PNMAL1|55228|PNMA-like 1##BC051688|PNMAL1|55228|PNMA-like 1##BC032508|PNMAL1|55228|PNMA-like 1##NM_001103149|PNMAL1|55228|PNMA-like 1##NM_018215|PNMAL1|55228|PNMA-like 1	0.984563	0.0	denovo_WM_7:19:0.857
chr1	9987550	9987705	reg1007478.p1	5.618	+	TSC_hg19_v1_chr1_-_9970314 AB021262 BC035794 BC014300 NM_001012329 NM_020248	-17318	-	AF438482 NM_001009566 NM_014944 AB020718	-103061	-	TSC_hg19_v1_chr1_-_9884024 BC033902	-103583	-	BC063443 NM_032368	15198	-	TSC_hg19_v1_chr1_-_10003358 AB060688 BC007240 AK304348 AK312550	15746	-	NM_022787 BC014943 TSC_hg19_v1_chr1_+_10003497 AK026065 AK222920	15869	+	AB021262|CTNNBIP1|56998|catenin, beta interacting protein 1##BC014300|CTNNBIP1|56998|catenin, beta interacting protein 1##NM_001012329|CTNNBIP1|56998|catenin, beta interacting protein 1##NM_020248|CTNNBIP1|56998|catenin, beta interacting protein 1##AF438482|CLSTN1|22883|calsyntenin 1##NM_001009566|CLSTN1|22883|calsyntenin 1##NM_014944|CLSTN1|22883|calsyntenin 1##AB020718|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1##BC063443|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##NM_032368|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AB060688|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC007240|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK304348|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK312550|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##NM_022787|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##BC014943|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK026065|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK222920|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1	0.999965	0.0	denovo_WM_7:-91:0.457	denovo_WM_7:-92:0.457
chr3	170086807	170086954	reg1009875.p2	5.617	+	NM_001145097 NM_001248008 U70730 X15217 X15219	-9470	+	AK300053 TSC_hg19_v1_chr3_+_170075522 BC053554	-11324	+	TSC_hg19_v1_chr3_+_170075508 BC059386	-11374	+	NM_005602 TSC_hg19_v1_chr3_+_170136652 AK294108 AK312923 BC013577	49778	+	AK098766 NM_001185056 AK294087	52161	+	TSC_hg19_v1_chr3_-_170303774 AK122655 NM_020949	216938	-	NM_001145097|SKIL|6498|SKI-like oncogene##NM_001248008|SKIL|6498|SKI-like oncogene##U70730|SKIL|6498|SKI-like oncogene##X15217|SKIL|6498|SKI-like oncogene##X15219|SKIL|6498|SKI-like oncogene##AK300053|SKIL|6498|SKI-like oncogene##BC059386|SKIL|6498|SKI-like oncogene##NM_005602|CLDN11|5010|claudin 11##AK312923|CLDN11|5010|claudin 11##BC013577|CLDN11|5010|claudin 11##NM_001185056|CLDN11|5010|claudin 11##AK294087|CLDN11|5010|claudin 11##AK122655|SLC7A14|57709|solute carrier family 7 (orphan transporter), member 14##NM_020949|SLC7A14|57709|solute carrier family 7 (orphan transporter), member 14	0.997476	0.0	
chr7	39988912	39989042	reg1001203.p2	5.617	+	TSC_hg19_v1_chr7_+_39773192 BC038571	-215745	+	TSC_hg19_v1_chr7_+_39663298 AK308109	-325669	+	TSC_hg19_v1_chr7_+_39663204 BC039858	-325766	+	TSC_hg19_v1_chr7_+_39989642 BC080601	649	+	BC064414 TSC_hg19_v1_chr7_+_39989879	907	+	TSC_hg19_v1_chr7_+_39989958 AK092534 NM_003718 NM_031267	982	+	BC038571|LINC00265|349114|long intergenic non-protein coding RNA 265##AK308109|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC039858|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC080601|CDK13|8621|cyclin-dependent kinase 13##AK092534|CDK13|8621|cyclin-dependent kinase 13##NM_003718|CDK13|8621|cyclin-dependent kinase 13##NM_031267|CDK13|8621|cyclin-dependent kinase 13	0.0	0.01466	
chr13	47172675	47172848	reg1007599.p2	5.616	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-45254	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-45341	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-45438	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	198554	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	298306	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1402690	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.964742	0.0	denovo_WM_7:-23:0.879
chr8	6966244	6966343	reg1008473.p1	5.616	+	BC107079 BC069690 NM_021010	-52039	-	BC093791 BC112188 BC069423 M21130 M23281 BC119706 X52053 BC027917 M26602 NM_005217 X13621 NM_001042500 NM_004084	-90494	-	BC093791 BC112188 BC069423 M21130 M26602 NM_001042500 NM_004084	-109593	-	NM_001164452 NM_001164456	148132	+	NM_001164452 NM_001164456	170998	+	NM_001164455	178620	+	BC107079|DEFA5|1670|defensin, alpha 5, Paneth cell-specific##BC069690|DEFA5|1670|defensin, alpha 5, Paneth cell-specific##NM_021010|DEFA5|1670|defensin, alpha 5, Paneth cell-specific##BC093791|DEFA1|1667|defensin, alpha 1##BC112188|DEFA1|1667|defensin, alpha 1##BC069423|DEFA1|1667|defensin, alpha 1##M21130|DEFA1|1667|defensin, alpha 1##M23281|DEFA3|1668|defensin, alpha 3, neutrophil-specific##BC119706|DEFA3|1668|defensin, alpha 3, neutrophil-specific##X52053|DEFA1|1667|defensin, alpha 1##BC027917|DEFA3|1668|defensin, alpha 3, neutrophil-specific##M26602|DEFA1|1667|defensin, alpha 1##NM_005217|DEFA3|1668|defensin, alpha 3, neutrophil-specific##X13621|DEFA3|1668|defensin, alpha 3, neutrophil-specific##NM_001042500|DEFA1B|728358|defensin, alpha 1B##NM_004084|DEFA1|1667|defensin, alpha 1##BC093791|DEFA1|1667|defensin, alpha 1##BC112188|DEFA1|1667|defensin, alpha 1##BC069423|DEFA1|1667|defensin, alpha 1##M21130|DEFA1|1667|defensin, alpha 1##M26602|DEFA1|1667|defensin, alpha 1##NM_001042500|DEFA1B|728358|defensin, alpha 1B##NM_004084|DEFA1|1667|defensin, alpha 1##NM_001164452|FAM90A14|645651|family with sequence similarity 90, member A14##NM_001164456|FAM90A13|441314|family with sequence similarity 90, member A13##NM_001164452|FAM90A14|645651|family with sequence similarity 90, member A14##NM_001164456|FAM90A13|441314|family with sequence similarity 90, member A13##NM_001164455|FAM90A5|441315|family with sequence similarity 90, member A5	1.895754	0.0	denovo_WM_7:-25:0.758	denovo_WM_7:-40:0.750
chr10	101630237	101630370	reg1006890.p2	5.615	+	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	-87740	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	-87808	+	BX537557 NM_004376 NM_078470	-137881	-	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	60400	-	TSC_hg19_v1_chr10_-_101769671 AL833283 NM_015221	139358	-	X14329 BC027897 NM_001308 AK313972	211322	-	X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BX537557|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_004376|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_078470|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##AK128576|DNMBP|23268|dynamin binding protein##AL833283|DNMBP|23268|dynamin binding protein##NM_015221|DNMBP|23268|dynamin binding protein##X14329|CPN1|1369|carboxypeptidase N, polypeptide 1##BC027897|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_001308|CPN1|1369|carboxypeptidase N, polypeptide 1##AK313972|CPN1|1369|carboxypeptidase N, polypeptide 1	1.032933	0.0	denovo_WM_7:-7:0.497
chr20	47477348	47477457	reg1008841.p2	5.615	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-32963	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-33116	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1062084	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	60916	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	185424	+	TSC_hg19_v1_chr20_+_47662875 AF053640	185486	+	AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)	0.992041	0.0	denovo_WM_7:-24:0.837
chr10	26776063	26776243	reg1008212.p1	5.614	+	TSC_hg19_v1_chr10_+_26727703 AY152730	-48447	+	TSC_hg19_v1_chr10_+_26727679 BC054516	-48485	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	-48836	+	AK096048 TSC_hg19_v1_chr10_-_26986612	210431	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	210493	+	TSC_hg19_v1_chr10_-_27057776 AK315914	281664	-	AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK315914|ABI1|10006|abl-interactor 1	0.998553	0.0	denovo_WM_7:-20:0.792
chr19	54889866	54890016	reg1007474.p2	5.614	+	AK303261 TSC_hg19_v1_chr19_-_54882123 AK097869	-7849	-	TSC_hg19_v1_chr19_-_54876672 NM_002287 NM_021706	-13246	-	TSC_hg19_v1_chr19_-_54876541 AK290415 AK315419	-13390	-	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	36710	+	AB162930 TSC_hg19_v1_chr19_+_54926723	36781	+	NM_052925	70123	+	AK303261|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK097869|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_002287|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_021706|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK290415|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK315419|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8	0.985784	0.0	denovo_WM_7:-60:0.521
chr19	5548177	5548259	reg1006681.p2	5.614	+	AK098722 NM_181710 AK292251 BC017592	-92792	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	-207424	-	TSC_hg19_v1_chr19_+_5032899 CU687848	-515319	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	74540	-	TSC_hg19_v1_chr19_-_5622794 NM_014649	74647	-	NM_001201338 NM_001201339 NM_001201340 NM_002967 TSC_hg19_v1_chr19_+_5623093 AK294718	74854	+	AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2##NM_014649|SAFB2|9667|scaffold attachment factor B2##NM_001201338|SAFB|6294|scaffold attachment factor B##NM_001201339|SAFB|6294|scaffold attachment factor B##NM_001201340|SAFB|6294|scaffold attachment factor B##NM_002967|SAFB|6294|scaffold attachment factor B##AK294718|SAFB|6294|scaffold attachment factor B	1.241052	0.0	denovo_WM_7:59:0.256	denovo_WM_7:74:0.246
chr3	160940052	160940206	reg1006121.p2	5.614	+	AK308865 BC013317 NM_015938 TSC_hg19_v1_chr3_+_160939098 AF132941 AK296710	-1008	+	AK225664 TSC_hg19_v1_chr3_+_160939097	-1033	+	AB050856 NM_033169 TSC_hg19_v1_chr3_-_160823138 AY359049 BC047618 AK223439 BC028571 AF154848 AK022491 AK095917 NM_001038628 NM_003781 NM_033167 NM_033168	-117192	-	AF458592 BC037817 NM_001040100	149679	-	NM_001080440	274466	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	3856149	-	AK308865|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC013317|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_015938|NMD3|51068|NMD3 homolog (S. cerevisiae)##AF132941|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK296710|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK225664|NMD3|51068|NMD3 homolog (S. cerevisiae)##AB050856|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_033169|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AY359049|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##BC047618|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AK223439|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##BC028571|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AF154848|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AK022491|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AK095917|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_001038628|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_003781|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_033167|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##NM_033168|B3GALNT1|8706|beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)##AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001080440|OTOL1|131149|otolin 1##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)	0.877377	0.0	denovo_WM_7:14:0.842
chr9	19127016	19127139	reg1009189.p1	5.614	+	TSC_hg19_v1_chr9_-_19102926 AF533709	-24068	-	AL832495 BC026178 TSC_hg19_v1_chr9_-_19102903 AF537091 AK056458 NM_017645	-24176	-	AB527315 AM393468 BC113981 BC114492 TSC_hg19_v1_chr9_-_19102891	-24307	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	400	-	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	471	-	NM_017925 BC144484 BC144485	163674	+	AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##AL832495|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC026178|HAUS6|54801|HAUS augmin-like complex, subunit 6##AF537091|HAUS6|54801|HAUS augmin-like complex, subunit 6##AK056458|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017645|HAUS6|54801|HAUS augmin-like complex, subunit 6##AM393468|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC113981|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC114492|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C	0.0	0.0	
chr14	64214986	64215083	reg1005503.p3	5.613	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-20285	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-106472	-	BX248008 NM_001008726	-106910	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	104661	+	NM_182913 AY061758 AK297874	465843	+	NM_182910	467637	+	AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	1.551491	0.0	denovo_WM_7:-45:0.519	denovo_WM_7:-46:0.454	denovo_WM_7:-63:0.315
chr11	67971999	67972145	reg1008305.p1	5.612	+	NM_001277 NM_212469 TSC_hg19_v1_chr11_-_67888859	-83184	-	D10704 BC036471 TSC_hg19_v1_chr11_-_67888844	-83315	-	AF025374 NM_006053	-161626	+	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	8907	-	TSC_hg19_v1_chr11_-_68039418 AF264781	67314	-	TSC_hg19_v1_chr11_-_68039453 NM_022338	67386	-	NM_001277|CHKA|1119|choline kinase alpha##NM_212469|CHKA|1119|choline kinase alpha##D10704|CHKA|1119|choline kinase alpha##BC036471|CHKA|1119|choline kinase alpha##AF025374|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##NM_006053|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24	0.998467	0.0	
chr12	75740112	75740205	reg1008191.p1	5.612	+	AY358731 BC014603 NM_152779 DQ894020 EU176187 CU677065	-11696	+	BC033860 AK091839 AX747212 NM_032606	-16339	-	AK094720 NM_139136 NM_139137 NM_153748	-136648	-	BC016749 AK093175 AX747973 TSC_hg19_v1_chr12_+_75784869	44701	+	TSC_hg19_v1_chr12_+_75784878 BX640916 BC029557 NM_152436 DQ891533 DQ894722	44727	+	NM_006851 TSC_hg19_v1_chr12_+_75874534 AK304847 X91911 BC005227 U16307 BC012510 AF400440 AK313449 CU680346 AB529136 EF667354	134428	+	AY358731|GLIPR1L1|256710|GLI pathogenesis-related 1 like 1##BC014603|GLIPR1L1|256710|GLI pathogenesis-related 1 like 1##NM_152779|GLIPR1L1|256710|GLI pathogenesis-related 1 like 1##DQ894020|GLIPR1L1|256710|GLI pathogenesis-related 1 like 1##EU176187|GLIPR1L1|256710|GLI pathogenesis-related 1 like 1##BC033860|CAPS2|84698|calcyphosine 2##AK091839|CAPS2|84698|calcyphosine 2##NM_032606|CAPS2|84698|calcyphosine 2##AK094720|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_139136|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_139137|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_153748|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##BC016749|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##AK093175|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##BX640916|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##BC029557|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##NM_152436|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##DQ891533|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##DQ894722|GLIPR1L2|144321|GLI pathogenesis-related 1 like 2##NM_006851|GLIPR1|11010|GLI pathogenesis-related 1##AK304847|GLIPR1|11010|GLI pathogenesis-related 1##X91911|GLIPR1|11010|GLI pathogenesis-related 1##BC005227|GLIPR1|11010|GLI pathogenesis-related 1##U16307|GLIPR1|11010|GLI pathogenesis-related 1##BC012510|GLIPR1|11010|GLI pathogenesis-related 1##AF400440|GLIPR1|11010|GLI pathogenesis-related 1##AK313449|GLIPR1|11010|GLI pathogenesis-related 1##EF667354|GLIPR1|11010|GLI pathogenesis-related 1	0.990253	0.0	denovo_WM_7:22:0.967
chr18	32606457	32606551	reg1007825.p2	5.612	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-48204	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-49545	+	FJ535564 FJ535565 NM_001198942 NM_001198944 NM_032980 NM_032981 AK295732 U46746 AK295789 U26743 AK315215	-208186	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	14952	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	214542	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	263668	-	NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##FJ535564|DTNA|1837|dystrobrevin, alpha##FJ535565|DTNA|1837|dystrobrevin, alpha##NM_001198942|DTNA|1837|dystrobrevin, alpha##NM_001198944|DTNA|1837|dystrobrevin, alpha##NM_032980|DTNA|1837|dystrobrevin, alpha##NM_032981|DTNA|1837|dystrobrevin, alpha##AK295732|DTNA|1837|dystrobrevin, alpha##U46746|DTNA|1837|dystrobrevin, alpha##AK295789|DTNA|1837|dystrobrevin, alpha##U26743|DTNA|1837|dystrobrevin, alpha##AK315215|DTNA|1837|dystrobrevin, alpha##NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30	0.54841	0.0	denovo_WM_7:-28:0.387
chr19	35810964	35811092	reg1008368.p1	5.612	+	NM_001199216 NM_002361 NM_080600 AK223562 BC093045 TSC_hg19_v1_chr19_+_35783063 BC034042 AK094545 AK222649 AK308976 M29273 AB209170 AK294644 AK222680 BC053347	-27986	+	AF309489 NM_021175 TSC_hg19_v1_chr19_+_35773430 AK096110 BC020612 AF131292 AY358669 AJ277280	-37603	+	AB528283 X90826 AY147880 CR536504 TSC_hg19_v1_chr19_+_35760006 AK297022	-50995	+	TSC_hg19_v1_chr19_+_35820089 NM_001185099 NM_001185100 NM_001185101 NM_001771 AK026467 AK225625 AK225694 AK301177 X59350 BC109307	9063	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	31422	+	AK290710 NM_005304 BC035657	38466	+	NM_001199216|MAG|4099|myelin associated glycoprotein##NM_002361|MAG|4099|myelin associated glycoprotein##NM_080600|MAG|4099|myelin associated glycoprotein##AK223562|MAG|4099|myelin associated glycoprotein##BC093045|MAG|4099|myelin associated glycoprotein##BC034042|MAG|4099|myelin associated glycoprotein##AK094545|MAG|4099|myelin associated glycoprotein##AK222649|MAG|4099|myelin associated glycoprotein##AK308976|MAG|4099|myelin associated glycoprotein##M29273|MAG|4099|myelin associated glycoprotein##AK294644|MAG|4099|myelin associated glycoprotein##AK222680|MAG|4099|myelin associated glycoprotein##BC053347|MAG|4099|myelin associated glycoprotein##AF309489|HAMP|57817|hepcidin antimicrobial peptide##NM_021175|HAMP|57817|hepcidin antimicrobial peptide##AK096110|HAMP|57817|hepcidin antimicrobial peptide##BC020612|HAMP|57817|hepcidin antimicrobial peptide##AF131292|HAMP|57817|hepcidin antimicrobial peptide##AY358669|HAMP|57817|hepcidin antimicrobial peptide##AJ277280|HAMP|57817|hepcidin antimicrobial peptide##X90826|USF2|7392|upstream transcription factor 2, c-fos interacting##AY147880|USF2|7392|upstream transcription factor 2, c-fos interacting##CR536504|USF2|7392|upstream transcription factor 2, c-fos interacting##AK297022|USF2|7392|upstream transcription factor 2, c-fos interacting##NM_001185099|CD22|933|CD22 molecule##NM_001185100|CD22|933|CD22 molecule##NM_001185101|CD22|933|CD22 molecule##NM_001771|CD22|933|CD22 molecule##AK026467|CD22|933|CD22 molecule##AK225625|CD22|933|CD22 molecule##AK225694|CD22|933|CD22 molecule##AK301177|CD22|933|CD22 molecule##X59350|CD22|933|CD22 molecule##BC109307|CD22|933|CD22 molecule##NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3	2.260288	0.0	denovo_WM_7:-73:0.252	denovo_WM_7:-77:0.508	denovo_WM_7:-92:0.411
chr2	197047219	197047350	reg1007408.p1	5.612	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-10966	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-11005	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-113789	-	BC117194 BC117198 AB037722 NM_020760	410008	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	457073	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	617129	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.980471	0.0	denovo_WM_7:-29:0.863
chr10	27146880	27147017	reg1003546.p2	5.611	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-89131	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-160302	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-160364	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	2892	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	2991	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	3057	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	0.0	0.0	
chr5	55448444	55448621	reg1007962.p1	5.611	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-157769	-	NM_001242636 NM_001242639	-299383	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-301263	+	AK123389 NM_024669	80653	-	NM_005921	662367	+	TSC_hg19_v1_chr5_+_56111375 AK307828	662832	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.0	
chr6	106442202	106442324	reg1009832.p2	5.611	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-591268	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-591305	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-591417	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	91933	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	91972	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	104541	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.955293	0.0	denovo_WM_7:-7:0.272	denovo_WM_7:-9:0.624
chr8	22301708	22301859	reg1006186.p3	5.611	+	TSC_hg19_v1_chr8_+_22298813 AY007249 AB385002 CU678778	-2939	+	TSC_hg19_v1_chr8_+_22298590 BC004864 S46622 AK299415	-3146	+	AK055013 TSC_hg19_v1_chr8_+_22298511 NM_001243974 NM_001243975 NM_005605	-3337	+	TSC_hg19_v1_chr8_+_22409237 BC091514 NM_005775	107455	+	TSC_hg19_v1_chr8_+_22409439 AK303950 AF037261 BC067260	107670	+	TSC_hg19_v1_chr8_+_22423258 NM_001018003 AF064807 BC010146	121454	+	AY007249|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##BC004864|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##S46622|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##AK299415|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##AK055013|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_001243974|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_001243975|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_005605|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##BC091514|SORBS3|10174|sorbin and SH3 domain containing 3##NM_005775|SORBS3|10174|sorbin and SH3 domain containing 3##AK303950|SORBS3|10174|sorbin and SH3 domain containing 3##AF037261|SORBS3|10174|sorbin and SH3 domain containing 3##BC067260|SORBS3|10174|sorbin and SH3 domain containing 3##NM_001018003|SORBS3|10174|sorbin and SH3 domain containing 3##AF064807|SORBS3|10174|sorbin and SH3 domain containing 3##BC010146|SORBS3|10174|sorbin and SH3 domain containing 3	0.992528	0.0	denovo_WM_7:0:0.496	denovo_WM_7:0:0.496
chr11	36530916	36531048	reg1008731.p1	5.610	+	NM_001160169	-108436	+	NM_001160168 NM_024841 BX640959 AK024275	-133422	+	NM_001160167 AK055042	-213202	+	TSC_hg19_v1_chr11_-_36531820 U78798 BC031052 AK292978 NM_004620 NM_145803	832	-	NM_000448 M29474	58586	+	TSC_hg19_v1_chr11_+_36616072 AK290833 DQ121386 AK095997 AK299642 BC009561 BC051031 NM_138787 AK302634	85122	+	NM_001160169|PRR5L|79899|proline rich 5 like##NM_001160168|PRR5L|79899|proline rich 5 like##NM_024841|PRR5L|79899|proline rich 5 like##BX640959|PRR5L|79899|proline rich 5 like##AK024275|PRR5L|79899|proline rich 5 like##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like##U78798|TRAF6|7189|TNF receptor-associated factor 6##BC031052|TRAF6|7189|TNF receptor-associated factor 6##AK292978|TRAF6|7189|TNF receptor-associated factor 6##NM_004620|TRAF6|7189|TNF receptor-associated factor 6##NM_145803|TRAF6|7189|TNF receptor-associated factor 6##NM_000448|RAG1|5896|recombination activating gene 1##M29474|RAG1|5896|recombination activating gene 1##AK290833|C11orf74|119710|chromosome 11 open reading frame 74##DQ121386|C11orf74|119710|chromosome 11 open reading frame 74##AK095997|C11orf74|119710|chromosome 11 open reading frame 74##AK299642|C11orf74|119710|chromosome 11 open reading frame 74##BC009561|C11orf74|119710|chromosome 11 open reading frame 74##BC051031|C11orf74|119710|chromosome 11 open reading frame 74##NM_138787|C11orf74|119710|chromosome 11 open reading frame 74##AK302634|C11orf74|119710|chromosome 11 open reading frame 74	0.99044	0.0	denovo_WM_7:0:0.814
chr1	59738335	59738429	reg1005800.p1	5.610	+	BC002646 TSC_hg19_v1_chr1_-_59249716 AK307137 BC068522 NM_002228	-488647	-	TSC_hg19_v1_chr1_-_59248287 BC009874	-490017	-	TSC_hg19_v1_chr1_-_59165735 BC167849 CR627323 NM_001085487	-572630	-	TSC_hg19_v1_chr1_+_59762504 NM_001113411 NM_018291 BX647626 AK022237 AK090568 AX746514 AK315649 BC014947	24230	+	NM_001244714 AK054842	37371	+	AK292314 BC011621 NM_015888 AF044923 TSC_hg19_v1_chr1_+_60280620 BC107857 DQ891957 DQ895143 CU679990 AK097735	542270	+	BC002646|JUN|3725|jun proto-oncogene##BC068522|JUN|3725|jun proto-oncogene##NM_002228|JUN|3725|jun proto-oncogene##BC009874|JUN|3725|jun proto-oncogene##BC167849|MYSM1|114803|Myb-like, SWIRM and MPN domains 1##CR627323|MYSM1|114803|Myb-like, SWIRM and MPN domains 1##NM_001085487|MYSM1|114803|Myb-like, SWIRM and MPN domains 1##NM_001113411|FGGY|55277|FGGY carbohydrate kinase domain containing##NM_018291|FGGY|55277|FGGY carbohydrate kinase domain containing##BX647626|FGGY|55277|FGGY carbohydrate kinase domain containing##AK022237|FGGY|55277|FGGY carbohydrate kinase domain containing##AK090568|FGGY|55277|FGGY carbohydrate kinase domain containing##AK315649|FGGY|55277|FGGY carbohydrate kinase domain containing##BC014947|FGGY|55277|FGGY carbohydrate kinase domain containing##NM_001244714|FGGY|55277|FGGY carbohydrate kinase domain containing##AK054842|FGGY|55277|FGGY carbohydrate kinase domain containing##AK292314|HOOK1|51361|hook homolog 1 (Drosophila)##BC011621|HOOK1|51361|hook homolog 1 (Drosophila)##NM_015888|HOOK1|51361|hook homolog 1 (Drosophila)##AF044923|HOOK1|51361|hook homolog 1 (Drosophila)##BC107857|HOOK1|51361|hook homolog 1 (Drosophila)##DQ891957|HOOK1|51361|hook homolog 1 (Drosophila)##DQ895143|HOOK1|51361|hook homolog 1 (Drosophila)##AK097735|HOOK1|51361|hook homolog 1 (Drosophila)	0.194586	0.0	
chr17	31237043	31237200	reg1008005.p1	5.610	+	TSC_hg19_v1_chr17_-_31204196 BC030602	-32908	-	TSC_hg19_v1_chr17_-_31204141 AK127942	-32998	-	CU688936 AB385376 AB018270 BC146763 NM_015194	-33226	-	NM_001033504 NM_015544	17806	+	TSC_hg19_v1_chr17_+_31255221 AL117619 AK313569 AY358573 BC000526	18082	+	AF216311 NM_173847 BC100886 BC100887	81781	+	BC030602|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##NM_001033504|TMEM98|26022|transmembrane protein 98##NM_015544|TMEM98|26022|transmembrane protein 98##AL117619|TMEM98|26022|transmembrane protein 98##AK313569|TMEM98|26022|transmembrane protein 98##AY358573|TMEM98|26022|transmembrane protein 98##BC000526|TMEM98|26022|transmembrane protein 98##AF216311|SPACA3|124912|sperm acrosome associated 3##NM_173847|SPACA3|124912|sperm acrosome associated 3##BC100886|SPACA3|124912|sperm acrosome associated 3##BC100887|SPACA3|124912|sperm acrosome associated 3	0.0	0.036392	
chr4	87885006	87885172	reg1008496.p1	5.610	+	TSC_hg19_v1_chr4_+_87857481 L13743	-27606	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-28874	+	BC016746 BC063410 NM_144645	-71529	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	43232	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	83162	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	256573	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	0.998221	0.0	
chr9	99540430	99540537	reg1005906.p1	5.610	+	AB023189 NM_014930 TSC_hg19_v1_chr9_-_99540352 BC036676 BC068587 BC058022 AK292600	-130	-	TSC_hg19_v1_chr9_-_99417600 BC136501 BC136503 NM_153698	-122873	-	TSC_hg19_v1_chr9_-_99382126 AF064104 AF064105 NM_003671 NM_033331	-158363	-	BC137073 AK131468 NM_001001662	75903	-	NM_001045477 NM_001170741	150802	+	TSC_hg19_v1_chr9_-_99775872 BC005058	235417	-	AB023189|ZNF510|22869|zinc finger protein 510##NM_014930|ZNF510|22869|zinc finger protein 510##BC036676|ZNF510|22869|zinc finger protein 510##BC068587|ZNF510|22869|zinc finger protein 510##BC058022|ZNF510|22869|zinc finger protein 510##AK292600|ZNF510|22869|zinc finger protein 510##BC136501|C9orf21|195827|chromosome 9 open reading frame 21##BC136503|C9orf21|195827|chromosome 9 open reading frame 21##NM_153698|C9orf21|195827|chromosome 9 open reading frame 21##AF064104|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064105|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_003671|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_033331|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##BC137073|ZNF782|158431|zinc finger protein 782##AK131468|ZNF782|158431|zinc finger protein 782##NM_001001662|ZNF782|158431|zinc finger protein 782##NM_001045477|FAM22G|441457|family with sequence similarity 22, member G##NM_001170741|FAM22G|441457|family with sequence similarity 22, member G##BC005058|HIATL2|84278|hippocampus abundant transcript-like 2	0.754635	0.0	denovo_WM_7:10:0.205	denovo_WM_7:12:0.480
chr21	47935422	47935602	reg1000904.p2	5.609	+	AK056738 TSC_hg19_v1_chr21_+_47878972 AB273729	-56516	+	TSC_hg19_v1_chr21_+_47878854 AK303351 NM_001146114 NM_001146115 NM_001146116 NM_015151 NM_206889 NM_206890 NM_206891 BC038443 BC033718 AF490768	-56650	+	TSC_hg19_v1_chr21_-_47878602 AK127572	-56911	-	BC001766 TSC_hg19_v1_chr21_-_48024996 BC041935 CS301701 CS301702 NM_006272	89497	-	TSC_hg19_v1_chr21_+_48055078 AK123650	119565	+	NM_001242864 NM_001242865 NM_001242866 NM_001535 NM_206962 TSC_hg19_v1_chr21_+_48055572 AK123352 AY786414 FJ436410 FJ436411 FJ436412 U79286 X99209 U80213 AK312573 AL833586	120031	+	AK056738|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AB273729|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AK303351|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146114|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146115|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146116|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_015151|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206889|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206890|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206891|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC038443|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC033718|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AF490768|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC001766|S100B|6285|S100 calcium binding protein B##BC041935|S100B|6285|S100 calcium binding protein B##NM_006272|S100B|6285|S100 calcium binding protein B##AK123650|PRMT2|3275|protein arginine methyltransferase 2##NM_001242864|PRMT2|3275|protein arginine methyltransferase 2##NM_001242865|PRMT2|3275|protein arginine methyltransferase 2##NM_001242866|PRMT2|3275|protein arginine methyltransferase 2##NM_001535|PRMT2|3275|protein arginine methyltransferase 2##NM_206962|PRMT2|3275|protein arginine methyltransferase 2##AK123352|PRMT2|3275|protein arginine methyltransferase 2##AY786414|PRMT2|3275|protein arginine methyltransferase 2##FJ436410|PRMT2|3275|protein arginine methyltransferase 2##FJ436411|PRMT2|3275|protein arginine methyltransferase 2##FJ436412|PRMT2|3275|protein arginine methyltransferase 2##U79286|PRMT2|3275|protein arginine methyltransferase 2##X99209|PRMT2|3275|protein arginine methyltransferase 2##U80213|PRMT2|3275|protein arginine methyltransferase 2##AK312573|PRMT2|3275|protein arginine methyltransferase 2##AL833586|PRMT2|3275|protein arginine methyltransferase 2	0.586307	0.0	denovo_WM_7:-51:0.586
chr22	39593676	39593845	reg1007864.p1	5.609	+	DQ064603 AB528611 EU446785 CU690844 BC051773 TSC_hg19_v1_chr22_-_39548584 NM_175709 AK124408	-45193	-	TSC_hg19_v1_chr22_-_39529023 BC128418	-64713	-	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	-100490	+	TSC_hg19_v1_chr22_-_39636906 NM_033016 X83705	43149	-	CR541807 CU013138 CU013426 AB590092 TSC_hg19_v1_chr22_-_39639984 CR456538 X02744	46265	-	NM_002608 X02811 TSC_hg19_v1_chr22_-_39640988 M12783	47247	-	DQ064603|CBX7|23492|chromobox homolog 7##EU446785|CBX7|23492|chromobox homolog 7##BC051773|CBX7|23492|chromobox homolog 7##NM_175709|CBX7|23492|chromobox homolog 7##BC128418|CBX7|23492|chromobox homolog 7##NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_033016|PDGFB|5155|platelet-derived growth factor beta polypeptide##X83705|PDGFB|5155|platelet-derived growth factor beta polypeptide##CR541807|PDGFB|5155|platelet-derived growth factor beta polypeptide##CU013138|PDGFB|5155|platelet-derived growth factor beta polypeptide##CU013426|PDGFB|5155|platelet-derived growth factor beta polypeptide##CR456538|PDGFB|5155|platelet-derived growth factor beta polypeptide##X02744|PDGFB|5155|platelet-derived growth factor beta polypeptide##NM_002608|PDGFB|5155|platelet-derived growth factor beta polypeptide##X02811|PDGFB|5155|platelet-derived growth factor beta polypeptide##M12783|PDGFB|5155|platelet-derived growth factor beta polypeptide	0.996942	0.0	denovo_WM_7:-17:0.841
chr1	117280062	117280182	reg1008451.p1	5.608	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-69739	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	-166445	-	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	-166507	-	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	16985	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	172520	+	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	264283	+	NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule	0.0	0.815555	CTCF.p2:-34:0.816
chr1	167685793	167685882	reg1008332.p1	5.608	+	TSC_hg19_v1_chr1_+_167599557 AL137762 BC101536 BC101562 BC143428	-86268	+	AF545852 TSC_hg19_v1_chr1_+_167599495 NM_052862 AK130798	-86424	+	TSC_hg19_v1_chr1_-_167523043 NM_003851	-162774	-	TSC_hg19_v1_chr1_+_167691226 NM_001146191 NM_003953 NM_024569 AK297112 AK075334 AK307250 AK291249 AY359019 AF181660 AF478447 BC000984 BC007881 AF095727 AF087020 AF092425 AF095726 AK315546 AB527648 AF239756 BT019542 CR542160 HQ447352	5491	+	BC117366 BC117372 AF176813 AF299350 AF331033 AK310395 AK310531 AK302884 NM_001167749 NM_018417	197510	-	AB528078 AM393085 CR407632 CR533473 TSC_hg19_v1_chr1_-_167905197 BC104157 BC104158	219305	-	AL137762|RCSD1|92241|RCSD domain containing 1##BC101536|RCSD1|92241|RCSD domain containing 1##BC101562|RCSD1|92241|RCSD domain containing 1##BC143428|RCSD1|92241|RCSD domain containing 1##AF545852|RCSD1|92241|RCSD domain containing 1##NM_052862|RCSD1|92241|RCSD domain containing 1##NM_003851|CREG1|8804|cellular repressor of E1A-stimulated genes 1##NM_001146191|MPZL1|9019|myelin protein zero-like 1##NM_003953|MPZL1|9019|myelin protein zero-like 1##NM_024569|MPZL1|9019|myelin protein zero-like 1##AK297112|MPZL1|9019|myelin protein zero-like 1##AK075334|MPZL1|9019|myelin protein zero-like 1##AK307250|MPZL1|9019|myelin protein zero-like 1##AK291249|MPZL1|9019|myelin protein zero-like 1##AY359019|MPZL1|9019|myelin protein zero-like 1##AF181660|MPZL1|9019|myelin protein zero-like 1##AF478447|MPZL1|9019|myelin protein zero-like 1##BC000984|MPZL1|9019|myelin protein zero-like 1##BC007881|MPZL1|9019|myelin protein zero-like 1##AF095727|MPZL1|9019|myelin protein zero-like 1##AF087020|MPZL1|9019|myelin protein zero-like 1##AF092425|MPZL1|9019|myelin protein zero-like 1##AF095726|MPZL1|9019|myelin protein zero-like 1##AK315546|MPZL1|9019|myelin protein zero-like 1##AF239756|MPZL1|9019|myelin protein zero-like 1##BT019542|MPZL1|9019|myelin protein zero-like 1##CR542160|MPZL1|9019|myelin protein zero-like 1##HQ447352|MPZL1|9019|myelin protein zero-like 1##BC117366|ADCY10|55811|adenylate cyclase 10 (soluble)##BC117372|ADCY10|55811|adenylate cyclase 10 (soluble)##AF176813|ADCY10|55811|adenylate cyclase 10 (soluble)##AF299350|ADCY10|55811|adenylate cyclase 10 (soluble)##AF331033|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310395|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310531|ADCY10|55811|adenylate cyclase 10 (soluble)##AK302884|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_001167749|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_018417|ADCY10|55811|adenylate cyclase 10 (soluble)##AM393085|BRP44|25874|brain protein 44##CR407632|BRP44|25874|brain protein 44##CR533473|BRP44|25874|brain protein 44##BC104157|BRP44|25874|brain protein 44##BC104158|BRP44|25874|brain protein 44	1.992705	0.0	denovo_WM_7:25:0.304	denovo_WM_7:26:0.244	denovo_WM_7:43:0.257	denovo_WM_7:44:0.318
chr13	53828823	53828918	reg1006457.p1	5.608	+	AK000683 NM_006418 BC117329 TSC_hg19_v1_chr13_+_53602947 AY358567 HQ258281 AF097021 AK300947	-225958	+	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	-406095	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	-514908	-	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3886246	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3892816	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3899389	+	AK000683|OLFM4|10562|olfactomedin 4##NM_006418|OLFM4|10562|olfactomedin 4##BC117329|OLFM4|10562|olfactomedin 4##AY358567|OLFM4|10562|olfactomedin 4##HQ258281|OLFM4|10562|olfactomedin 4##AF097021|OLFM4|10562|olfactomedin 4##AK300947|OLFM4|10562|olfactomedin 4##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A	0.996573	0.0	
chr5	63642060	63642210	reg1007620.p1	5.608	+	TSC_hg19_v1_chr5_+_63461666 AK090756 AX746601 NM_001113561 NM_178532 BC101277 BC101278 BC101279 AL832580 BC101397	-180454	+	AK314187 TSC_hg19_v1_chr5_-_63258084	-384113	-	AF498978 BC069159 NM_000524 AB464441 BC136263 TSC_hg19_v1_chr5_-_63257719 AK291429 AK311460	-384473	-	BC140707 NM_001029875 BX640900	160346	+	NM_001164442 TSC_hg19_v1_chr5_+_63986235	344050	+	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	422311	-	AK090756|RNF180|285671|ring finger protein 180##NM_001113561|RNF180|285671|ring finger protein 180##NM_178532|RNF180|285671|ring finger protein 180##BC101277|RNF180|285671|ring finger protein 180##BC101278|RNF180|285671|ring finger protein 180##BC101279|RNF180|285671|ring finger protein 180##AL832580|RNF180|285671|ring finger protein 180##BC101397|RNF180|285671|ring finger protein 180##AK314187|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AF498978|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC069159|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##NM_000524|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC136263|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK291429|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC140707|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##NM_001029875|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##BX640900|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##NM_001164442|FAM159B|100132916|family with sequence similarity 159, member B##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1	3.095216	0.0	denovo_WM_7:38:0.465	denovo_WM_7:43:0.351	denovo_WM_7:58:0.474	denovo_WM_7:73:0.502
chr1	187020929	187021072	reg1006193.p1	5.607	+	NM_024420 TSC_hg19_v1_chr1_+_186798126 AK290336 M68874 M72393 AK302938 BC114340	-222912	+	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	-371510	-	M33478 NM_002597	-590773	-	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	3425735	-	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	5106603	+	AY643711 NM_001039152	5265121	+	NM_024420|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK290336|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M68874|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M72393|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK302938|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##BC114340|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M33478|PDC|5132|phosducin##NM_002597|PDC|5132|phosducin##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21	1.694933	0.949053	denovo_WM_7:40:0.579	CTCF.p2:-66:0.949	denovo_WM_7:-84:0.611
chr2	114668813	114668975	reg1006799.p1	5.607	+	TSC_hg19_v1_chr2_+_114647862 AB527566 CU692216	-21044	+	TSC_hg19_v1_chr2_+_114647707 AK312659	-21186	+	AK300224 TSC_hg19_v1_chr2_+_114647699	-21193	+	AB209353 TSC_hg19_v1_chr2_+_114674521	5619	+	BC030832 NM_020868	531004	+	AK055256 BC038514 NM_001178036	550272	+	AK312659|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK300224|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AB209353|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##BC030832|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_020868|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)	0.983783	0.0	denovo_WM_7:-16:0.218	denovo_WM_7:-17:0.393	denovo_WM_7:-20:0.373
chr7	5551867	5551971	reg1006214.p1	5.607	+	NM_001080495	-88743	-	AY129022 TSC_hg19_v1_chr7_-_5461555	-90378	-	TSC_hg19_v1_chr7_-_5460842 BC140723	-91013	-	CU692902 TSC_hg19_v1_chr7_-_5553380 AK057042 BC006426 BC024256 NM_024963	1432	-	TSC_hg19_v1_chr7_-_5553435 AK130444 AK294949	1508	-	M28424 V00478 TSC_hg19_v1_chr7_-_5567980 HQ154074 DQ407611 EF036500	16093	-	NM_001080495|TNRC18|84629|trinucleotide repeat containing 18##AY129022|TNRC18|84629|trinucleotide repeat containing 18##AK057042|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC006426|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC024256|FBXL18|80028|F-box and leucine-rich repeat protein 18##NM_024963|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK130444|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK294949|FBXL18|80028|F-box and leucine-rich repeat protein 18##M28424|ACTB|60|actin, beta##V00478|ACTB|60|actin, beta##DQ407611|ACTB|60|actin, beta##EF036500|ACTB|60|actin, beta	2.102177	0.0	denovo_WM_7:-33:0.867
chr9	128320899	128320998	reg1008370.p1	5.607	+	TSC_hg19_v1_chr9_+_128024122 AK056493 NM_015635 AB040954 BC114937 BC114962	-296799	+	TSC_hg19_v1_chr9_+_128024104 BC110990	-296844	+	TSC_hg19_v1_chr9_+_128024097 AK296381	-296850	+	TSC_hg19_v1_chr9_-_128469297 M37191	148362	-	TSC_hg19_v1_chr9_-_128469466 AK290060	148519	-	AL833042 TSC_hg19_v1_chr9_-_128469485 AY633624 AY633625 AY633626 BC002326 BC003044	148531	-	AK056493|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##NM_015635|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AB040954|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114937|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114962|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##M37191|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AK290060|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AL833042|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633624|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633625|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633626|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC002326|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC003044|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1	0.0	0.71455	CTCF.p2:-42:0.715
chr15	76603893	76604073	reg1001255.p1	5.606	+	TSC_hg19_v1_chr15_-_76603808 AK292979 NM_000126 NM_001127716	-169	-	TSC_hg19_v1_chr15_-_76603791 BC029995	-186	-	TSC_hg19_v1_chr15_-_76603771 AK300044 BC015526 D28380	-218	-	TSC_hg19_v1_chr15_+_76629141 AB593133 AK001022 BC012136 NM_145805 BC011967 EU446846	25179	+	BX647285 NM_001145923	550301	-	AF242528 NM_020843	572220	-	AK292979|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##NM_000126|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##NM_001127716|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC029995|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##AK300044|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC015526|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##AB593133|ISL2|64843|ISL LIM homeobox 2##AK001022|ISL2|64843|ISL LIM homeobox 2##BC012136|ISL2|64843|ISL LIM homeobox 2##NM_145805|ISL2|64843|ISL LIM homeobox 2##BC011967|ISL2|64843|ISL LIM homeobox 2##EU446846|ISL2|64843|ISL LIM homeobox 2##BX647285|SCAPER|49855|S-phase cyclin A-associated protein in the ER##NM_001145923|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AF242528|SCAPER|49855|S-phase cyclin A-associated protein in the ER##NM_020843|SCAPER|49855|S-phase cyclin A-associated protein in the ER	0.0	0.0	
chr4	87990346	87990485	reg1007645.p2	5.606	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-22164	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-62094	+	TSC_hg19_v1_chr4_+_87857481 L13743	-132932	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	151247	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	253610	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	321856	-	AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11	0.995278	0.0	
chr5	72978179	72978277	reg1008878.p2	5.606	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-56243	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-116646	+	BC012917 TSC_hg19_v1_chr5_-_72861465 AF251051 NM_023039	-116769	-	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	131122	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	958235	-	AK096578 NM_003633	959020	-	AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##BC012917|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AF251051|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##NM_023039|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)	0.997755	0.0	denovo_WM_7:23:0.449	denovo_WM_7:24:0.449
chr7	76237478	76237544	reg1000611.p2	5.606	+	TSC_hg19_v1_chr7_+_76178675 BC078169	-58836	+	TSC_hg19_v1_chr7_+_76178647 BC090058	-58879	+	NM_030570 NM_182684 AK290096 AY233462 BC004304 AK056760 CU678662	-97655	+	TSC_hg19_v1_chr7_-_76256148 BC017101	18692	-	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	19036	-	BC036053 NM_020879 BX649000 AK292491 HM370402	514435	+	BC078169|LOC100133091|100133091|uncharacterized LOC100133091##BC090058|LOC100133091|100133091|uncharacterized LOC100133091##NM_030570|UPK3B|80761|uroplakin 3B##NM_182684|UPK3B|80761|uroplakin 3B##AK290096|UPK3B|80761|uroplakin 3B##AY233462|UPK3B|80761|uroplakin 3B##BC004304|UPK3B|80761|uroplakin 3B##AK056760|UPK3B|80761|uroplakin 3B##BC017101|POMZP3|22932|POM121 and ZP3 fusion##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146	2.035681	0.0	
chr17	38758074	38758249	reg1007764.p1	5.605	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-36443	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-100315	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-158342	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	45909	-	BC069196 TSC_hg19_v1_chr17_-_38804818	46635	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	63189	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	1.708493	0.0	denovo_WM_7:64:0.641	denovo_WM_7:79:0.828
chr19	10557172	10557316	reg1007151.p2	5.605	+	AF073745 NM_001111309	-14134	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	-15817	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	-26014	+	TSC_hg19_v1_chr19_+_10563605 BC038234 NM_006202 BC019864	6424	+	TSC_hg19_v1_chr19_-_10613392 BC002930 AF361886 D50922 NM_012289	56194	-	TSC_hg19_v1_chr19_-_10614033 NM_203500	56670	-	AF073745|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111309|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC038234|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_006202|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC019864|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC002930|KEAP1|9817|kelch-like ECH-associated protein 1##AF361886|KEAP1|9817|kelch-like ECH-associated protein 1##D50922|KEAP1|9817|kelch-like ECH-associated protein 1##NM_012289|KEAP1|9817|kelch-like ECH-associated protein 1##NM_203500|KEAP1|9817|kelch-like ECH-associated protein 1	1.941848	0.0	denovo_WM_7:22:0.808	denovo_WM_7:37:0.892
chr7	81977244	81977363	reg1005263.p1	5.605	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-577929	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1428629	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1428869	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	95543	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	95777	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	814566	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	0.0	0.0	
chr22	42817419	42817574	reg1006139.p1	5.604	+	BC038245 TSC_hg19_v1_chr22_-_42765218	-52294	-	AB527391 NM_005650 NM_181492	-206119	-	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-290615	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	10885	-	BC031838 TSC_hg19_v1_chr22_-_42915796 BC041639 BC042335 AB527998 AK314650	98271	-	TSC_hg19_v1_chr22_-_42915803 BC073834 BC064560 BC035992 BC121118 BC121119 NM_015703	98318	-	NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC031838|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC041639|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC042335|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK314650|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC073834|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC064560|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC035992|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121118|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121119|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##NM_015703|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)	1.633225	0.0	denovo_WM_7:-7:0.563	denovo_WM_7:-36:0.438	denovo_WM_7:-37:0.439
chr7	106791025	106791142	reg1005681.p1	5.604	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-105880	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-285154	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-285309	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	18356	+	NM_005295 AK122621 AK307393	319419	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	413327	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	1.938295	0.479412	CTCF.p2:-7:0.479	denovo_WM_7:67:0.964
chr15	44888851	44888992	reg1004990.p2	5.603	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-59539	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-59579	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-59609	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	66923	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	66959	-	BC036924 NM_001145112	80164	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	1.987963	0.045781	denovo_WM_7:-39:0.266	denovo_WM_7:-40:0.717	denovo_WM_7:-55:0.853
chr2	114189556	114189674	reg1008499.p2	5.603	+	S77904 S77905 S77906 X69699 BC001060 AK292191 AK309154 AK225538 NM_003466 NM_013952 NM_013953 NM_013992 TSC_hg19_v1_chr2_-_114036499	-153122	-	TSC_hg19_v1_chr2_+_113993123 AK056052 AK307781 BX537688 AK056355 AK130275	-196345	+	TSC_hg19_v1_chr2_+_113931576 BC035307 BC073151	-258034	+	AK290072 NM_172003 AK303653 AY343910 TSC_hg19_v1_chr2_+_114195398 AY320414 BC120991 BC120992 AK225251 AF452722	5724	+	AK122950 NM_012184 BC136428 AY344639 AF452723	67121	+	AL137714 AK302089 AK308574 TSC_hg19_v1_chr2_+_114341674	152002	+	S77904|PAX8|7849|paired box 8##S77905|PAX8|7849|paired box 8##S77906|PAX8|7849|paired box 8##X69699|PAX8|7849|paired box 8##BC001060|PAX8|7849|paired box 8##AK292191|PAX8|7849|paired box 8##AK309154|PAX8|7849|paired box 8##AK225538|PAX8|7849|paired box 8##NM_003466|PAX8|7849|paired box 8##NM_013952|PAX8|7849|paired box 8##NM_013953|PAX8|7849|paired box 8##NM_013992|PAX8|7849|paired box 8##AK056052|LOC654433|654433|uncharacterized LOC654433##AK307781|LOC654433|654433|uncharacterized LOC654433##BX537688|LOC654433|654433|uncharacterized LOC654433##AK056355|LOC654433|654433|uncharacterized LOC654433##AK130275|LOC654433|654433|uncharacterized LOC654433##BC035307|PSD4|23550|pleckstrin and Sec7 domain containing 4##BC073151|PSD4|23550|pleckstrin and Sec7 domain containing 4##AK290072|CBWD2|150472|COBW domain containing 2##NM_172003|CBWD2|150472|COBW domain containing 2##AK303653|CBWD2|150472|COBW domain containing 2##AY343910|CBWD2|150472|COBW domain containing 2##AY320414|CBWD1|55871|COBW domain containing 1##BC120991|CBWD2|150472|COBW domain containing 2##BC120992|CBWD2|150472|COBW domain containing 2##AK225251|CBWD2|150472|COBW domain containing 2##AF452722|CBWD2|150472|COBW domain containing 2##AK122950|FOXD4L1|200350|forkhead box D4-like 1##NM_012184|FOXD4L1|200350|forkhead box D4-like 1##BC136428|FOXD4L1|200350|forkhead box D4-like 1##AY344639|FOXD4L1|200350|forkhead box D4-like 1##AF452723|FOXD4L1|200350|forkhead box D4-like 1##AL137714|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK302089|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK308574|WASH2P|375260|WAS protein family homolog 2 pseudogene	0.494106	0.0	denovo_WM_7:24:0.452
chr7	100544227	100544354	reg1007850.p1	5.603	+	BC105060 BC105062 BC143469 AK291321 TSC_hg19_v1_chr7_-_100493509 BC001541 AK223443 AF334270 BC026315 BC036813 NM_000665 NM_015831	-50779	-	BC017456 BC067904 AK292467 NM_001015072	-56985	-	TSC_hg19_v1_chr7_+_100472809 BC109116	-71464	+	AK130455 TSC_hg19_v1_chr7_+_100612694	68403	+	NM_001164462	68613	+	TSC_hg19_v1_chr7_+_100663360 AJ606307 AJ606308 NM_001040105	119075	+	BC105060|ACHE|43|acetylcholinesterase##BC105062|ACHE|43|acetylcholinesterase##BC143469|ACHE|43|acetylcholinesterase##AK291321|ACHE|43|acetylcholinesterase##BC001541|ACHE|43|acetylcholinesterase##AK223443|ACHE|43|acetylcholinesterase##AF334270|ACHE|43|acetylcholinesterase##BC026315|ACHE|43|acetylcholinesterase##BC036813|ACHE|43|acetylcholinesterase##NM_000665|ACHE|43|acetylcholinesterase##NM_015831|ACHE|43|acetylcholinesterase##BC017456|UFSP1|402682|UFM1-specific peptidase 1 (non-functional)##BC067904|UFSP1|402682|UFM1-specific peptidase 1 (non-functional)##AK292467|UFSP1|402682|UFM1-specific peptidase 1 (non-functional)##NM_001015072|UFSP1|402682|UFM1-specific peptidase 1 (non-functional)##BC109116|SRRT|51593|serrate RNA effector molecule homolog (Arabidopsis)##NM_001164462|MUC12|10071|mucin 12, cell surface associated##AJ606307|MUC17|140453|mucin 17, cell surface associated##AJ606308|MUC17|140453|mucin 17, cell surface associated##NM_001040105|MUC17|140453|mucin 17, cell surface associated	0.993267	0.0	
chr18	19366617	19366741	reg1010268.p1	5.602	+	CR749635 TSC_hg19_v1_chr18_+_19353654	-13032	+	AY149908 BC110581 BC110582 NM_020774	-45135	+	TSC_hg19_v1_chr18_+_19321288 AY147849	-45396	+	AK123079 TSC_hg19_v1_chr18_-_19749029	382307	-	X95701 BC027891 NM_005257 TSC_hg19_v1_chr18_+_19749549	382797	+	HQ258502 BC132871 AF273058 BC031065 BC070128 NM_172241	631146	-	CR749635|MIB1|57534|mindbomb homolog 1 (Drosophila)##AY149908|MIB1|57534|mindbomb homolog 1 (Drosophila)##BC110581|MIB1|57534|mindbomb homolog 1 (Drosophila)##BC110582|MIB1|57534|mindbomb homolog 1 (Drosophila)##NM_020774|MIB1|57534|mindbomb homolog 1 (Drosophila)##AY147849|MIB1|57534|mindbomb homolog 1 (Drosophila)##AK123079|LOC100128893|100128893|uncharacterized LOC100128893##X95701|GATA6|2627|GATA binding protein 6##BC027891|GATA6|2627|GATA binding protein 6##NM_005257|GATA6|2627|GATA binding protein 6##HQ258502|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC132871|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##AF273058|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC031065|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC070128|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_172241|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1	0.816975	0.0	denovo_WM_7:-23:0.258	denovo_WM_7:-24:0.394
chr9	99328083	99328263	reg1008447.p1	5.602	+	TSC_hg19_v1_chr9_+_99212450 NM_014282 BC018788 AF241831 AB463760	-115704	+	TSC_hg19_v1_chr9_-_99180672 AY554164 AY554165 NM_153695	-147489	-	BC126141 TSC_hg19_v1_chr9_-_99180642	-147577	-	TSC_hg19_v1_chr9_-_99329110 AK126388 NM_001077181	974	-	TSC_hg19_v1_chr9_-_99382126 AF064104 AF064105 NM_003671 NM_033331	53947	-	TSC_hg19_v1_chr9_-_99417600 BC136501 BC136503 NM_153698	89437	-	NM_014282|HABP4|22927|hyaluronan binding protein 4##BC018788|HABP4|22927|hyaluronan binding protein 4##AF241831|HABP4|22927|hyaluronan binding protein 4##AY554164|ZNF367|195828|zinc finger protein 367##AY554165|ZNF367|195828|zinc finger protein 367##NM_153695|ZNF367|195828|zinc finger protein 367##BC126141|ZNF367|195828|zinc finger protein 367##AK126388|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_001077181|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064104|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064105|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_003671|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_033331|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##BC136501|C9orf21|195827|chromosome 9 open reading frame 21##BC136503|C9orf21|195827|chromosome 9 open reading frame 21##NM_153698|C9orf21|195827|chromosome 9 open reading frame 21	0.0	0.0	
chrX	74110710	74110806	reg1009151.p1	5.602	+	NM_016120 NM_183353 TSC_hg19_v1_chrX_-_73834460	-276294	-	TSC_hg19_v1_chrX_-_73834444 AK001334	-276319	-	BC002451 TSC_hg19_v1_chrX_-_73834428	-276330	-	AK307471 NM_001008537 AB095942 BC152557	34541	-	TSC_hg19_v1_chrX_-_74376076 AF078777 AK307414 AF133659 BT009918 CU675349 DQ890692 EU176476 BC006323 AF038950 BX537833 AK294657 AK001418 NM_004299	265345	-	NM_145052 TSC_hg19_v1_chrX_+_74493908 AY643714 AK309951 AK056354 BC015116 CR749336 AK293024	383200	+	NM_016120|RLIM|51132|ring finger protein, LIM domain interacting##NM_183353|RLIM|51132|ring finger protein, LIM domain interacting##AK001334|RLIM|51132|ring finger protein, LIM domain interacting##AK307471|KIAA2022|340533|KIAA2022##NM_001008537|KIAA2022|340533|KIAA2022##AB095942|KIAA2022|340533|KIAA2022##BC152557|KIAA2022|340533|KIAA2022##AF078777|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AK307414|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AF133659|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##BT009918|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##DQ890692|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##EU176476|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##BC006323|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AF038950|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##BX537833|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AK294657|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AK001418|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##NM_004299|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##NM_145052|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AY643714|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AK309951|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AK056354|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##BC015116|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##CR749336|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AK293024|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)	0.0	0.0	
chr14	25376928	25377071	reg1009064.p1	5.601	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-273581	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-298138	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-331553	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	142239	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1689989	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3859229	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.940949	0.0	denovo_WM_7:0:0.409	denovo_WM_7:0:0.409
chr6	53225125	53225247	reg1006939.p2	5.601	+	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	-11325	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	-11465	-	AK125098 TSC_hg19_v1_chr6_-_53213676	-11547	-	TSC_hg19_v1_chr6_-_53409483 AB516284 CU691792 CU692650 EU832317 EU832402	184280	-	TSC_hg19_v1_chr6_-_53409528 BC039894 M90656	184331	-	TSC_hg19_v1_chr6_-_53409821 AB262176 BC022487	184627	-	AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB516284|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832317|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832402|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC039894|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##M90656|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AB262176|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC022487|GCLC|2729|glutamate-cysteine ligase, catalytic subunit	2.847682	0.0	denovo_WM_7:-61:0.364	denovo_WM_7:-62:0.235	denovo_WM_7:-83:0.786	denovo_WM_7:-98:0.735
chr13	74599662	74599777	reg1007307.p2	5.600	+	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	-966515	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-1243409	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-1243513	-	AF161471 AF113122 NM_007249	108270	-	TSC_hg19_v1_chr13_-_74708425 AK291397	108677	-	CR749622 TSC_hg19_v1_chr13_-_75901948	1302203	-	AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12##CR749622|TBC1D4|9882|TBC1 domain family, member 4	0.989761	0.0	denovo_WM_7:-10:0.417	denovo_WM_7:-11:0.372
chr16	29352602	29352697	reg1008784.p1	5.600	+	TSC_hg19_v1_chr16_+_29086310 BC042920 AK225670 AK298442 AK301253	-266344	+	AK307342 NM_001014987 NM_001014988 NM_014387 TSC_hg19_v1_chr16_+_28996403 AJ223280	-356251	+	BC011563 NM_001014989	-356503	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	113202	+	BC022832 NM_001031827 NM_001039182	113635	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	118577	+	AK225670|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK298442|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK301253|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK307342|LAT|27040|linker for activation of T cells##NM_001014987|LAT|27040|linker for activation of T cells##NM_001014988|LAT|27040|linker for activation of T cells##NM_014387|LAT|27040|linker for activation of T cells##AJ223280|LAT|27040|linker for activation of T cells##BC011563|LAT|27040|linker for activation of T cells##NM_001014989|LAT|27040|linker for activation of T cells##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	0.0	0.0	
chr16	87255563	87255668	reg1012644.p1	5.600	+	BC100027 NM_005250	-643501	+	BC113437 BC113439 NM_005251	-654759	+	TSC_hg19_v1_chr16_-_86588803 AK023955 BC112057 BC112059 BC143702 BC143703 BC143704 BC143705 BC143707 NM_001159380 AK023060 AK096836 AK297726 NM_001159377 NM_001159378 NM_001159379 NM_022764	-666843	-	TSC_hg19_v1_chr16_-_87350760 AB528835 AM392822 AM393070	95185	-	TSC_hg19_v1_chr16_-_87350999 BC015536 AK026130 NM_001195124 NM_001195125	95371	-	TSC_hg19_v1_chr16_-_87417364 AY736035 AF428140 BC012748 BC002985 NM_024735	161747	-	BC100027|FOXL1|2300|forkhead box L1##NM_005250|FOXL1|2300|forkhead box L1##BC113437|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##BC113439|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##NM_005251|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##AK023955|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC112057|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC112059|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143702|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143703|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143704|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143705|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143707|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159380|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK023060|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK096836|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK297726|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159377|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159378|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159379|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_022764|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AM392822|C16orf95|100506581|chromosome 16 open reading frame 95##AM393070|C16orf95|100506581|chromosome 16 open reading frame 95##BC015536|C16orf95|100506581|chromosome 16 open reading frame 95##AK026130|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195124|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195125|C16orf95|100506581|chromosome 16 open reading frame 95##AY736035|FBXO31|79791|F-box protein 31##AF428140|FBXO31|79791|F-box protein 31##BC012748|FBXO31|79791|F-box protein 31##BC002985|FBXO31|79791|F-box protein 31##NM_024735|FBXO31|79791|F-box protein 31	0.0	0.0	
chr21	37627154	37627334	reg1008811.p1	5.600	+	AJ237839 NM_005128	-90406	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	-98613	-	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	-119895	+	TSC_hg19_v1_chr21_+_37692548 BC058002 NM_015358 AK295133 BC007311 D50926 BC094779 BC132731 BC144116 AK292957 AB489143	65275	+	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	130446	+	BC012126 NM_012130 AY355349	211487	-	AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##BC058002|MORC3|23515|MORC family CW-type zinc finger 3##NM_015358|MORC3|23515|MORC family CW-type zinc finger 3##AK295133|MORC3|23515|MORC family CW-type zinc finger 3##BC007311|MORC3|23515|MORC family CW-type zinc finger 3##D50926|MORC3|23515|MORC family CW-type zinc finger 3##BC094779|MORC3|23515|MORC family CW-type zinc finger 3##BC132731|MORC3|23515|MORC family CW-type zinc finger 3##BC144116|MORC3|23515|MORC family CW-type zinc finger 3##AK292957|MORC3|23515|MORC family CW-type zinc finger 3##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14	0.999414	0.0	
chr15	66097429	66097519	reg1008817.p2	5.599	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-12881	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-13001	-	AF062922 NM_004727	-183205	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	64373	+	TSC_hg19_v1_chr15_-_66321664 AK054827	224219	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	448603	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	0.043903	0.0	
chr1	26453109	26453230	reg1007455.p1	5.598	+	AK312872 NM_001243533 NM_152835 TSC_hg19_v1_chr1_+_26438314 AF411102 BC028713 AK129596	-14830	+	NM_001243532	-15514	+	BT007373 BC080529 AF353673 BC015717 AJ276484 AK056942 AK297820 NM_032588 TSC_hg19_v1_chr1_-_26394122	-59116	-	AK024112 NM_024869 BC025658 AK290715	32371	+	TSC_hg19_v1_chr1_+_26496395 AK311926 NM_015871 BC002580 BC019267 AB527484 D45213 EU446798	43286	+	TSC_hg19_v1_chr1_+_26503979 AK296814 NM_006314 AB209335 AK222904 BC011604 BC012797 AF100153 AK001900 AK222817 AK292646 AK302056	50827	+	AK312872|PDIK1L|149420|PDLIM1 interacting kinase 1 like##NM_001243533|PDIK1L|149420|PDLIM1 interacting kinase 1 like##NM_152835|PDIK1L|149420|PDLIM1 interacting kinase 1 like##AF411102|PDIK1L|149420|PDLIM1 interacting kinase 1 like##BC028713|PDIK1L|149420|PDLIM1 interacting kinase 1 like##NM_001243532|PDIK1L|149420|PDLIM1 interacting kinase 1 like##BT007373|TRIM63|84676|tripartite motif containing 63##BC080529|TRIM63|84676|tripartite motif containing 63##AF353673|TRIM63|84676|tripartite motif containing 63##AJ276484|TRIM63|84676|tripartite motif containing 63##AK056942|TRIM63|84676|tripartite motif containing 63##AK297820|TRIM63|84676|tripartite motif containing 63##NM_032588|TRIM63|84676|tripartite motif containing 63##AK024112|FAM110D|79927|family with sequence similarity 110, member D##NM_024869|FAM110D|79927|family with sequence similarity 110, member D##BC025658|FAM110D|79927|family with sequence similarity 110, member D##AK290715|FAM110D|79927|family with sequence similarity 110, member D##AK311926|ZNF593|51042|zinc finger protein 593##NM_015871|ZNF593|51042|zinc finger protein 593##BC002580|ZNF593|51042|zinc finger protein 593##BC019267|ZNF593|51042|zinc finger protein 593##D45213|ZNF593|51042|zinc finger protein 593##EU446798|ZNF593|51042|zinc finger protein 593##AK296814|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##NM_006314|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AB209335|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK222904|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##BC011604|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##BC012797|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AF100153|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK001900|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK222817|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK292646|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1##AK302056|CNKSR1|10256|connector enhancer of kinase suppressor of Ras 1	0.969675	0.0	denovo_WM_7:29:0.970
chr6	157886452	157886632	reg1004724.p2	5.598	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-84003	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-141325	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-141958	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	357747	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	357832	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	516345	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.998572	0.0	denovo_WM_7:100:0.526
chr2	234318373	234318514	reg1009429.p2	5.597	+	D73409 NM_003648	-21644	+	TSC_hg19_v1_chr2_+_234263153 D63479	-55231	+	TSC_hg19_v1_chr2_+_234263150 AB078966 NM_152879	-55297	+	AK001647 AJ583821 NM_018218	155773	-	TSC_hg19_v1_chr2_-_234475429 BC067300 AK295112	156974	-	AF462268 NM_019076 AK313488 AF462267 AF030310 AY435143	207878	+	D73409|DGKD|8527|diacylglycerol kinase, delta 130kDa##NM_003648|DGKD|8527|diacylglycerol kinase, delta 130kDa##D63479|DGKD|8527|diacylglycerol kinase, delta 130kDa##AB078966|DGKD|8527|diacylglycerol kinase, delta 130kDa##NM_152879|DGKD|8527|diacylglycerol kinase, delta 130kDa##AK001647|USP40|55230|ubiquitin specific peptidase 40##AJ583821|USP40|55230|ubiquitin specific peptidase 40##NM_018218|USP40|55230|ubiquitin specific peptidase 40##BC067300|USP40|55230|ubiquitin specific peptidase 40##AK295112|USP40|55230|ubiquitin specific peptidase 40##AF462268|UGT1A8|54576|UDP glucuronosyltransferase 1 family, polypeptide A8##NM_019076|UGT1A8|54576|UDP glucuronosyltransferase 1 family, polypeptide A8##AK313488|UGT1A8|54576|UDP glucuronosyltransferase 1 family, polypeptide A8##AF462267|UGT1A8|54576|UDP glucuronosyltransferase 1 family, polypeptide A8##AF030310|UGT1A8|54576|UDP glucuronosyltransferase 1 family, polypeptide A8##AY435143|UGT1A8|54576|UDP glucuronosyltransferase 1 family, polypeptide A8	1.988899	0.0	denovo_WM_7:-2:0.887	denovo_WM_7:12:0.898
chr18	51789943	51790046	reg1000732.p1	5.596	+	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	-38917	-	TSC_hg19_v1_chr18_-_51750997 BC032638	-39029	-	AF072246 TSC_hg19_v1_chr18_-_51750614	-39457	-	NM_007195 TSC_hg19_v1_chr18_+_51795943 AK301578 AF140501 BC032617 BC032662 AL136670 AF245438 AK093688 AB463184 AM392978 DQ890893 DQ896811 CU689468	5946	+	AB528241 AF480305 NM_139171	90948	-	BX640877 NM_173529	95176	+	AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##NM_007195|POLI|11201|polymerase (DNA directed) iota##AK301578|POLI|11201|polymerase (DNA directed) iota##AF140501|POLI|11201|polymerase (DNA directed) iota##BC032617|POLI|11201|polymerase (DNA directed) iota##BC032662|POLI|11201|polymerase (DNA directed) iota##AL136670|POLI|11201|polymerase (DNA directed) iota##AF245438|POLI|11201|polymerase (DNA directed) iota##AK093688|POLI|11201|polymerase (DNA directed) iota##AM392978|POLI|11201|polymerase (DNA directed) iota##DQ890893|POLI|11201|polymerase (DNA directed) iota##DQ896811|POLI|11201|polymerase (DNA directed) iota##AF480305|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##NM_139171|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##BX640877|C18orf54|162681|chromosome 18 open reading frame 54##NM_173529|C18orf54|162681|chromosome 18 open reading frame 54	0.996593	0.0	denovo_WM_7:-36:0.245	denovo_WM_7:-37:0.245	denovo_WM_7:-38:0.245	denovo_WM_7:-39:0.245
chr14	102541094	102541183	reg1008294.p2	5.595	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	-110177	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	-110310	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-264829	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	12226	-	TSC_hg19_v1_chr14_-_102553513 NM_005348	12368	-	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	64901	-	AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_005348|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.015599	0.0	
chr17	33894756	33894919	reg1006917.p1	5.595	+	BC140847 BC157877 BC157879 NM_001129820	-9730	-	NM_001195790	-80080	-	TSC_hg19_v1_chr17_-_33775787 CR749630 AK056514 AL832726 AK122750 NM_144682	-119026	-	BC031085 AK312635 BC015751 U91521 NM_000286	10768	-	TSC_hg19_v1_chr17_+_33914281 NM_001030006 NM_001282 M34175 AK295667	19453	+	TSC_hg19_v1_chr17_+_33914353 AK301522 AY341427 AK289528	19500	+	BC140847|SLFN14|342618|schlafen family member 14##BC157877|SLFN14|342618|schlafen family member 14##BC157879|SLFN14|342618|schlafen family member 14##NM_001129820|SLFN14|342618|schlafen family member 14##NM_001195790|SLFN12L|100506736|schlafen family member 12-like##CR749630|SLFN13|146857|schlafen family member 13##AK056514|SLFN13|146857|schlafen family member 13##AL832726|SLFN13|146857|schlafen family member 13##AK122750|SLFN13|146857|schlafen family member 13##NM_144682|SLFN13|146857|schlafen family member 13##BC031085|PEX12|5193|peroxisomal biogenesis factor 12##AK312635|PEX12|5193|peroxisomal biogenesis factor 12##BC015751|PEX12|5193|peroxisomal biogenesis factor 12##U91521|PEX12|5193|peroxisomal biogenesis factor 12##NM_000286|PEX12|5193|peroxisomal biogenesis factor 12##NM_001030006|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##NM_001282|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##M34175|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK295667|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK301522|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AY341427|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK289528|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit	0.997176	0.0	
chr20	19055664	19055823	reg1007540.p1	5.595	+	NM_001242671	-244905	-	AF418568 AF418570 AX721297 NM_178483 AK130970 AY248902 BC105121 BC112024	-261345	+	TSC_hg19_v1_chr20_+_18568661 NM_080820 BC045167 AK074304 BC100923 BC100924 BC100925 BC100926 AK291440 AF332356 CU692252	-487093	+	TSC_hg19_v1_chr20_+_19193285 AF288087 NM_020689	137542	+	TSC_hg19_v1_chr20_+_19193372 AB587438 AF169257	137710	+	TSC_hg19_v1_chr20_+_19867169 AK094884 NM_001242581	811400	+	NM_001242671|LOC100128496|100128496|uncharacterized LOC100128496##AF418568|C20orf79|140856|chromosome 20 open reading frame 79##AF418570|C20orf79|140856|chromosome 20 open reading frame 79##NM_178483|C20orf79|140856|chromosome 20 open reading frame 79##AK130970|C20orf79|140856|chromosome 20 open reading frame 79##AY248902|C20orf79|140856|chromosome 20 open reading frame 79##BC105121|C20orf79|140856|chromosome 20 open reading frame 79##BC112024|C20orf79|140856|chromosome 20 open reading frame 79##NM_080820|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC045167|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AK074304|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100923|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100924|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100925|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##BC100926|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AK291440|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AF332356|DTD1|92675|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)##AF288087|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##NM_020689|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##AF169257|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##AK094884|RIN2|54453|Ras and Rab interactor 2##NM_001242581|RIN2|54453|Ras and Rab interactor 2	0.021131	0.0	
chr9	92295640	92295737	reg1006107.p1	5.595	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	-75707	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-182681	-	BC054500 NM_001142287 NM_006378	-201078	-	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	1109431	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	1268348	+	TSC_hg19_v1_chr9_+_93564068 Z29630 BC001645 BC002962	1268379	+	NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase##Z29630|SYK|6850|spleen tyrosine kinase##BC001645|SYK|6850|spleen tyrosine kinase##BC002962|SYK|6850|spleen tyrosine kinase	0.97253	0.0	denovo_WM_7:2:0.462	denovo_WM_7:3:0.510
chr20	35477356	35477492	reg1005921.p1	5.593	+	TSC_hg19_v1_chr20_-_35444558 AK131491	-32804	-	AK057056 TSC_hg19_v1_chr20_-_35407842	-69648	-	TSC_hg19_v1_chr20_-_35402167 BC035821 AK093031 AX747868 AK290738 NM_001145316 NM_024918 AK301671 AK301840 BC058899 AK023408 BC026011 NM_001145315 NM_001145317 NM_001145318	-75239	-	AK126630 NM_199181	10851	-	TSC_hg19_v1_chr20_-_35492072 NM_080627	14710	-	TSC_hg19_v1_chr20_+_35504544 BC127688 BC130646 BC130648 AK123544 NM_080628 HQ258755	27125	+	AK131491|KIAA0889|140710|KIAA0889##AK057056|KIAA0889|140710|KIAA0889##BC035821|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK093031|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK290738|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145316|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_024918|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301671|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301840|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC058899|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK023408|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC026011|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145315|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145317|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145318|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK126630|KIAA0889|140710|KIAA0889##NM_199181|KIAA0889|140710|KIAA0889##NM_080627|KIAA0889|140710|KIAA0889##BC127688|C20orf118|140711|chromosome 20 open reading frame 118##BC130646|C20orf118|140711|chromosome 20 open reading frame 118##BC130648|C20orf118|140711|chromosome 20 open reading frame 118##AK123544|C20orf118|140711|chromosome 20 open reading frame 118##NM_080628|C20orf118|140711|chromosome 20 open reading frame 118##HQ258755|C20orf118|140711|chromosome 20 open reading frame 118	0.997274	0.0	denovo_WM_7:47:0.238	denovo_WM_7:48:0.238	denovo_WM_7:49:0.238	denovo_WM_7:50:0.238
chr21	26825520	26825700	reg1009287.p1	5.593	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1024542	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4454837	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4454920	+	TSC_hg19_v1_chr21_+_26934442 AF402776	108862	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	154205	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	186043	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.0	0.0	
chr6_cox_hap2	3310086	3310204	reg1007369.p1	5.593	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.98982	0.0	denovo_WM_7:-17:0.967
chr7	5371082	5371206	reg1008924.p2	5.593	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	-48538	+	BC016912 AF151808 NM_001033520 AY691426	-117252	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-141159	+	TSC_hg19_v1_chr7_-_5460842 BC140723	89762	-	AY129022 TSC_hg19_v1_chr7_-_5461555	90397	-	NM_001080495	92032	-	AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY129022|TNRC18|84629|trinucleotide repeat containing 18##NM_001080495|TNRC18|84629|trinucleotide repeat containing 18	0.0	0.0	
chr8	126352448	126352561	reg1008485.p2	5.593	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-248407	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-248447	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-248482	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	90075	+	TSC_hg19_v1_chr8_-_126963395 BX648371	610909	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1218051	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.54319	0.0	
chr17	27219245	27219393	reg1007993.p1	5.592	+	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	-37296	+	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	-49529	-	TSC_hg19_v1_chr17_-_27139467 AK095569	-79872	-	M60922 CU678570 AB528533 BC003683 TSC_hg19_v1_chr17_-_27224641	5289	-	TSC_hg19_v1_chr17_-_27224717 NM_004475	5393	-	AX795344 TSC_hg19_v1_chr17_-_27229986 AX795345 AX795340 AX795338 AX795342 BC015582 AX795337 AX795341 AX795339 AX795335 AX795336 AK296017 AX795346 AX795343 AY358566 NM_144683	10686	-	AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63##AK095569|C17orf63|55731|chromosome 17 open reading frame 63##M60922|FLOT2|2319|flotillin 2##BC003683|FLOT2|2319|flotillin 2##NM_004475|FLOT2|2319|flotillin 2##BC015582|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AK296017|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AY358566|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_144683|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13	0.993717	0.0	
chr5	94376918	94377086	reg1008108.p2	5.592	+	AK025997 TSC_hg19_v1_chr5_-_94224607	-152396	-	BC070332 AK299080 AK297452 CR936768 AL050298 NM_032290 BC054885 BC107571	-422629	+	TSC_hg19_v1_chr5_-_93954299 BX648338 BC035515 AK308195 NM_001145678 NM_173665	-422745	-	AY656716 AK058012 BC030005 AK057694 TSC_hg19_v1_chr5_-_94417350	40266	-	NM_001002796	40542	-	TSC_hg19_v1_chr5_-_94620306 AY656715 NM_024717	243291	-	AK025997|MCTP1|79772|multiple C2 domains, transmembrane 1##BC070332|ANKRD32|84250|ankyrin repeat domain 32##AK299080|ANKRD32|84250|ankyrin repeat domain 32##AK297452|ANKRD32|84250|ankyrin repeat domain 32##CR936768|ANKRD32|84250|ankyrin repeat domain 32##AL050298|ANKRD32|84250|ankyrin repeat domain 32##NM_032290|ANKRD32|84250|ankyrin repeat domain 32##BC054885|ANKRD32|84250|ankyrin repeat domain 32##BC107571|ANKRD32|84250|ankyrin repeat domain 32##BX648338|KIAA0825|285600|KIAA0825##BC035515|KIAA0825|285600|KIAA0825##AK308195|KIAA0825|285600|KIAA0825##NM_001145678|KIAA0825|285600|KIAA0825##NM_173665|KIAA0825|285600|KIAA0825##AY656716|MCTP1|79772|multiple C2 domains, transmembrane 1##AK058012|MCTP1|79772|multiple C2 domains, transmembrane 1##BC030005|MCTP1|79772|multiple C2 domains, transmembrane 1##AK057694|MCTP1|79772|multiple C2 domains, transmembrane 1##NM_001002796|MCTP1|79772|multiple C2 domains, transmembrane 1##AY656715|MCTP1|79772|multiple C2 domains, transmembrane 1##NM_024717|MCTP1|79772|multiple C2 domains, transmembrane 1	1.94788	0.0	denovo_WM_7:21:0.252	denovo_WM_7:22:0.242	denovo_WM_7:23:0.232	denovo_WM_7:24:0.231	denovo_WM_7:39:0.892
chrX	57618299	57618445	reg1008618.p2	5.592	+	NM_007157	-104	+	NM_174912 AK055766 BC073922 TSC_hg19_v1_chrX_+_57313185 CU687272 EU285560 BC048279	-305157	+	BC071694 NM_019003	-454315	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	88	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	318587	-	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4952827	-	NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_174912|FAAH2|158584|fatty acid amide hydrolase 2##AK055766|FAAH2|158584|fatty acid amide hydrolase 2##BC073922|FAAH2|158584|fatty acid amide hydrolase 2##EU285560|FAAH2|158584|fatty acid amide hydrolase 2##BC048279|FAAH2|158584|fatty acid amide hydrolase 2##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4	0.0	0.0	
chr1	27021462	27021592	reg1007532.p1	5.591	+	AK292722 NM_001006665 TSC_hg19_v1_chr1_+_26872346	-149169	+	TSC_hg19_v1_chr1_+_26872335 AK092955	-149204	+	TSC_hg19_v1_chr1_+_26856259 BC014966 AK315730 L07597 AB385042 DQ892242 DQ895443	-165192	+	NM_006015 NM_139135 AF231056	995	+	AB210022 AF219114 AB051293 AF265208 TSC_hg19_v1_chr1_+_27024003	2442	+	TSC_hg19_v1_chr1_+_27101218 AK074940 AK308363	79761	+	AK292722|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##NM_001006665|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##AK092955|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##BC014966|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##AK315730|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##L07597|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##DQ892242|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##DQ895443|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##NM_006015|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_139135|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF231056|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AB210022|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF219114|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF265208|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK074940|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK308363|ARID1A|8289|AT rich interactive domain 1A (SWI-like)	0.983059	0.0	denovo_WM_7:-18:0.848
chr1	6551104	6551210	reg1007099.p2	5.591	+	BC015231 NM_001042664	-523	-	AB097001 NM_001042665 TSC_hg19_v1_chr1_-_6546016	-5143	-	TSC_hg19_v1_chr1_-_6545530 AK299523	-5632	-	AK024676 NM_020631	602	-	TSC_hg19_v1_chr1_-_6557448 AK125550	6294	-	AB018263 TSC_hg19_v1_chr1_-_6557485 NM_001042663	6333	-	BC015231|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##NM_001042664|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##AB097001|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##NM_001042665|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##AK299523|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##AK024676|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##NM_020631|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##AK125550|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##AB018263|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5##NM_001042663|PLEKHG5|57449|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	0.995588	0.029011	denovo_WM_7:2:0.388	denovo_WM_7:3:0.523
chr19	52129999	52130150	reg1008088.p1	5.591	+	NM_007147 BC007778 AK292687 BC052997 D50419	-55527	+	U71382 BC140798 BC035359 AK300182 AK300170 AK308174 AK309903 D86358 D86359 NM_001177547 NM_001177548 NM_001177549 NM_001245 NM_198845 NM_198846	-95074	-	CU690206 AY358140 AF282256 AK225931 BC035809 AK095919 NM_053003 TSC_hg19_v1_chr19_-_52005055	-125045	-	DQ892433 AF170484 BC029896 AK225753 U71383 NM_003830	3583	-	AY358369 AY854038 AK298284 NM_001098612	19995	-	NM_001523 U59269 BC035837 AM904814	97158	-	NM_007147|ZNF175|7728|zinc finger protein 175##BC007778|ZNF175|7728|zinc finger protein 175##AK292687|ZNF175|7728|zinc finger protein 175##BC052997|ZNF175|7728|zinc finger protein 175##D50419|ZNF175|7728|zinc finger protein 175##U71382|SIGLEC6|946|sialic acid binding Ig-like lectin 6##BC140798|SIGLEC6|946|sialic acid binding Ig-like lectin 6##BC035359|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK300182|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK300170|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK308174|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK309903|SIGLEC6|946|sialic acid binding Ig-like lectin 6##D86358|SIGLEC6|946|sialic acid binding Ig-like lectin 6##D86359|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001177547|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001177548|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001177549|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001245|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_198845|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_198846|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AY358140|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##AF282256|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##AK225931|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##BC035809|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##AK095919|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##NM_053003|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##DQ892433|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##AF170484|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##BC029896|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##AK225753|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##U71383|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##NM_003830|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##AY854038|SIGLEC14|100049587|sialic acid binding Ig-like lectin 14##AK298284|SIGLEC14|100049587|sialic acid binding Ig-like lectin 14##NM_001098612|SIGLEC14|100049587|sialic acid binding Ig-like lectin 14##NM_001523|HAS1|3036|hyaluronan synthase 1##U59269|HAS1|3036|hyaluronan synthase 1##BC035837|HAS1|3036|hyaluronan synthase 1##AM904814|HAS1|3036|hyaluronan synthase 1	1.78802	0.0	denovo_WM_7:37:0.818	denovo_WM_7:81:0.284	denovo_WM_7:92:0.464
chr2	98896787	98896909	reg1008997.p1	5.591	+	NM_144992 AL832761 BC095480 TSC_hg19_v1_chr2_+_98703652 AK292397 AK057248 AL832635 BC150653 AK302390 BC026091	-193202	+	TSC_hg19_v1_chr2_-_98612395 AK098792	-284445	-	AK297450 TSC_hg19_v1_chr2_-_98612338 NM_015348	-284662	-	DQ426863 NM_001079878 NM_001298 DQ067460	65785	+	DQ067461 TSC_hg19_v1_chr2_+_98962901 DQ426864 DQ067459 AK308149	66057	+	TSC_hg19_v1_chr2_+_99061320 AK307823 BC028361 NM_001134224 NM_001134225 NM_001566 NM_004027 U26398 U96919	164510	+	NM_144992|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832761|VWA3B|200403|von Willebrand factor A domain containing 3B##BC095480|VWA3B|200403|von Willebrand factor A domain containing 3B##AK292397|VWA3B|200403|von Willebrand factor A domain containing 3B##AK057248|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832635|VWA3B|200403|von Willebrand factor A domain containing 3B##BC150653|VWA3B|200403|von Willebrand factor A domain containing 3B##AK302390|VWA3B|200403|von Willebrand factor A domain containing 3B##BC026091|VWA3B|200403|von Willebrand factor A domain containing 3B##AK098792|TMEM131|23505|transmembrane protein 131##AK297450|TMEM131|23505|transmembrane protein 131##NM_015348|TMEM131|23505|transmembrane protein 131##DQ426863|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001079878|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001298|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067460|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067461|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067459|CNGA3|1261|cyclic nucleotide gated channel alpha 3##AK308149|CNGA3|1261|cyclic nucleotide gated channel alpha 3##AK307823|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##BC028361|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001134224|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001134225|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001566|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_004027|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##U26398|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##U96919|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa	0.846646	0.0	denovo_WM_7:-95:0.673
chrX	57936892	57937050	reg1007420.p1	5.591	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-12	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-318511	+	NM_007157	-318703	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4634228	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4711296	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4843896	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	0.0	
chr1	173387649	173387772	reg1007894.p2	5.590	+	CR542033 D90224 X79929 NM_003326	-211318	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	-213057	-	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	-367654	-	TSC_hg19_v1_chr1_-_173446300 AK127238	58598	-	TSC_hg19_v1_chr1_+_173446473 AK300680	58763	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	58817	+	CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##AK300680|PRDX6|9588|peroxiredoxin 6##BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6	0.999956	0.0	denovo_WM_7:61:0.457	denovo_WM_7:62:0.457
chr7	33232995	33233152	reg1008053.p1	5.590	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-63992	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-84096	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-130751	-	AK289963 NM_133468 AK096150 BC060868	712069	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	1464846	+	DQ287932 NM_015283	1844579	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	0.997767	0.0	
chr9	100273431	100273590	reg1006469.p1	5.589	+	TSC_hg19_v1_chr9_+_100263947 BC002660 NM_003275	-9572	+	NM_001166116 AK314533	-10048	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	-99131	+	TSC_hg19_v1_chr9_-_100395642 AK094043 AK291199 AX748426 BC035604 BX648493 BX538308 AK128615	122119	-	NM_002486 AK312807 TSC_hg19_v1_chr9_+_100395897 D32002	122316	+	NM_139246	122451	-	BC002660|TMOD1|7111|tropomodulin 1##NM_003275|TMOD1|7111|tropomodulin 1##NM_001166116|TMOD1|7111|tropomodulin 1##AK314533|TMOD1|7111|tropomodulin 1##AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7##AK094043|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK291199|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BC035604|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX648493|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX538308|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK128615|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##NM_002486|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##AK312807|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##D32002|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##NM_139246|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	0.0	0.0	
chr14	78248144	78248309	reg1009644.p1	5.588	+	AB464230 BT020060 BT020061 CR457433 BC051806 BC065286 TSC_hg19_v1_chr14_-_78227500 AK302246 AX775981 U51432 BC105585 BC108903 AF045184 AK292274 NM_012245 AK293619 AK316087	-20717	-	NM_001173978 NM_174943 BC107147 BC113929 BC113986	-20982	+	TSC_hg19_v1_chr14_+_78174445 BC017895 AF253980 AJ272055 AY860853 HQ257938	-73780	+	TSC_hg19_v1_chr14_+_78266441 NM_001142545 NM_020421 AK299430 BX248292 BC017459 BC058906 AK096919	18224	+	AB018286 BC152457 NM_004796	621866	+	NM_001105250 NM_138970 AK056530 BC059368 BC068469	1497478	+	BT020060|SNW1|22938|SNW domain containing 1##BT020061|SNW1|22938|SNW domain containing 1##CR457433|SNW1|22938|SNW domain containing 1##BC065286|SNW1|22938|SNW domain containing 1##AK302246|SNW1|22938|SNW domain containing 1##AX775981|SNW1|22938|SNW domain containing 1##U51432|SNW1|22938|SNW domain containing 1##BC105585|SNW1|22938|SNW domain containing 1##BC108903|SNW1|22938|SNW domain containing 1##AF045184|SNW1|22938|SNW domain containing 1##AK292274|SNW1|22938|SNW domain containing 1##NM_012245|SNW1|22938|SNW domain containing 1##AK293619|SNW1|22938|SNW domain containing 1##AK316087|SNW1|22938|SNW domain containing 1##NM_001173978|C14orf178|283579|chromosome 14 open reading frame 178##NM_174943|C14orf178|283579|chromosome 14 open reading frame 178##BC107147|C14orf178|283579|chromosome 14 open reading frame 178##BC113929|C14orf178|283579|chromosome 14 open reading frame 178##BC113986|C14orf178|283579|chromosome 14 open reading frame 178##BC017895|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AF253980|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AJ272055|SLIRP|81892|SRA stem-loop interacting RNA binding protein##AY860853|SLIRP|81892|SRA stem-loop interacting RNA binding protein##HQ257938|SLIRP|81892|SRA stem-loop interacting RNA binding protein##NM_001142545|ADCK1|57143|aarF domain containing kinase 1##NM_020421|ADCK1|57143|aarF domain containing kinase 1##AK299430|ADCK1|57143|aarF domain containing kinase 1##BX248292|ADCK1|57143|aarF domain containing kinase 1##BC017459|ADCK1|57143|aarF domain containing kinase 1##BC058906|ADCK1|57143|aarF domain containing kinase 1##AK096919|ADCK1|57143|aarF domain containing kinase 1##AB018286|NRXN3|9369|neurexin 3##BC152457|NRXN3|9369|neurexin 3##NM_004796|NRXN3|9369|neurexin 3##NM_001105250|NRXN3|9369|neurexin 3##NM_138970|NRXN3|9369|neurexin 3##AK056530|NRXN3|9369|neurexin 3##BC059368|NRXN3|9369|neurexin 3##BC068469|NRXN3|9369|neurexin 3	0.180963	0.0	
chr3	31664539	31664689	reg1008213.p2	5.588	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	-90132	+	TSC_hg19_v1_chr3_+_31574468 AK074587	-90165	+	TSC_hg19_v1_chr3_+_31574119 AK311488	-90484	+	TSC_hg19_v1_chr3_-_32022751 BC003168 AF346291 AK304067 AK097503	358155	-	AK294003 NM_001137674	358651	+	AF392451 NM_001174060 NM_017784	358675	-	AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##BC003168|OSBPL10|114884|oxysterol binding protein-like 10##AF346291|OSBPL10|114884|oxysterol binding protein-like 10##AK304067|OSBPL10|114884|oxysterol binding protein-like 10##AK294003|ZNF860|344787|zinc finger protein 860##NM_001137674|ZNF860|344787|zinc finger protein 860##AF392451|OSBPL10|114884|oxysterol binding protein-like 10##NM_001174060|OSBPL10|114884|oxysterol binding protein-like 10##NM_017784|OSBPL10|114884|oxysterol binding protein-like 10	0.0	0.0	
chr8	102218903	102218990	reg1007576.p1	5.588	+	TSC_hg19_v1_chr8_-_102217929 NM_001042510 NM_016096	-992	-	TSC_hg19_v1_chr8_-_102217877 NM_001042511	-1070	-	BC035233 TSC_hg19_v1_chr8_-_102217845 BC015925 AF125099 AF275802 AF275809 AK290477 BC068524	-1253	-	TSC_hg19_v1_chr8_+_102504667 NM_024915 AK296817 AK310221	285719	+	TSC_hg19_v1_chr8_+_102504840 AK023844 AK292853 BC069618 BC069633 BC069638 BC129822 BC129823	285964	+	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	584237	-	NM_001042510|ZNF706|51123|zinc finger protein 706##NM_016096|ZNF706|51123|zinc finger protein 706##NM_001042511|ZNF706|51123|zinc finger protein 706##BC035233|ZNF706|51123|zinc finger protein 706##BC015925|ZNF706|51123|zinc finger protein 706##AF125099|ZNF706|51123|zinc finger protein 706##AF275802|ZNF706|51123|zinc finger protein 706##AF275809|ZNF706|51123|zinc finger protein 706##AK290477|ZNF706|51123|zinc finger protein 706##BC068524|ZNF706|51123|zinc finger protein 706##NM_024915|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK296817|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK310221|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK023844|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK292853|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069618|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069633|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069638|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129822|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129823|GRHL2|79977|grainyhead-like 2 (Drosophila)##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta	1.987894	0.0	denovo_WM_7:-44:0.562	denovo_WM_7:-60:0.840
chr14	77499584	77499686	reg1006416.p1	5.587	+	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-4575	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-4951	-	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-206840	+	AK124327 TSC_hg19_v1_chr14_-_77542533	42898	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	65010	+	BC117676 TSC_hg19_v1_chr14_-_77608072	108380	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.998791	0.0	denovo_WM_7:41:0.307	denovo_WM_7:42:0.307	denovo_WM_7:43:0.307
chr17	26382739	26382865	reg1008122.p1	5.587	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-12801	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-13149	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-162411	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	263391	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	279684	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	279901	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.0	0.0	
chr11	22802551	22802664	reg1008234.p1	5.586	+	TSC_hg19_v1_chr11_+_22696382 CU680566 AB590780 CR450285	-106209	+	NM_005256 TSC_hg19_v1_chr11_+_22696327 U95032	-106271	+	BC013326 BC040470 NM_177553	-112954	+	TSC_hg19_v1_chr11_-_22851382 AL833119 AF527534 NM_148893	48738	-	NM_001195637	79364	-	AK127695 NM_001009909 NM_001252008 NM_001252010 TSC_hg19_v1_chr11_+_24518540 AY164460 AL832641 AY358386 BC132829 BC144177 AK309077 BC151234 HQ258382	1716042	+	CR450285|GAS2|2620|growth arrest-specific 2##NM_005256|GAS2|2620|growth arrest-specific 2##U95032|GAS2|2620|growth arrest-specific 2##BC013326|GAS2|2620|growth arrest-specific 2##BC040470|GAS2|2620|growth arrest-specific 2##NM_177553|GAS2|2620|growth arrest-specific 2##AL833119|SVIP|258010|small VCP/p97-interacting protein##AF527534|SVIP|258010|small VCP/p97-interacting protein##NM_148893|SVIP|258010|small VCP/p97-interacting protein##NM_001195637|LOC100500938|100500938|uncharacterized LOC100500938##AK127695|LUZP2|338645|leucine zipper protein 2##NM_001009909|LUZP2|338645|leucine zipper protein 2##NM_001252008|LUZP2|338645|leucine zipper protein 2##NM_001252010|LUZP2|338645|leucine zipper protein 2##AY164460|LUZP2|338645|leucine zipper protein 2##AL832641|LUZP2|338645|leucine zipper protein 2##AY358386|LUZP2|338645|leucine zipper protein 2##BC132829|LUZP2|338645|leucine zipper protein 2##BC144177|LUZP2|338645|leucine zipper protein 2##AK309077|LUZP2|338645|leucine zipper protein 2##BC151234|LUZP2|338645|leucine zipper protein 2##HQ258382|LUZP2|338645|leucine zipper protein 2	0.0	0.0	
chr2	232087113	232087293	reg1008392.p2	5.586	+	TSC_hg19_v1_chr2_+_232063410 AY929062	-23809	+	AY219922 TSC_hg19_v1_chr2_+_232063378	-23825	+	TSC_hg19_v1_chr2_+_232063340 NM_025139 BX537956 AK309395	-23848	+	TSC_hg19_v1_chr2_+_232120778 AB055779	33575	+	AF502430 NM_145236 TSC_hg19_v1_chr2_+_232260454 AK126207 AB528076	173219	+	AK001314 TSC_hg19_v1_chr2_-_232326464	239226	-	AY929062|ARMC9|80210|armadillo repeat containing 9##AY219922|ARMC9|80210|armadillo repeat containing 9##NM_025139|ARMC9|80210|armadillo repeat containing 9##BX537956|ARMC9|80210|armadillo repeat containing 9##AK309395|ARMC9|80210|armadillo repeat containing 9##AF502430|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##NM_145236|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK126207|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK001314|NCL|4691|nucleolin	0.0	0.0	
chr11	93275210	93275378	reg1008471.p1	5.585	+	TSC_hg19_v1_chr11_+_93063782 NM_181645 BC017929	-211451	+	TSC_hg19_v1_chr11_-_92931106 AY162216 NM_152313 BC047374	-344209	-	TSC_hg19_v1_chr11_-_92930978 CU690400	-344307	-	AF197137 TSC_hg19_v1_chr11_-_93276558 BC031564 NM_020179	1241	-	TSC_hg19_v1_chr11_+_93394847 NM_033395 BC015989 BC017394	119540	+	AB051518 TSC_hg19_v1_chr11_+_93394877	119595	+	NM_181645|CCDC67|159989|coiled-coil domain containing 67##BC017929|CCDC67|159989|coiled-coil domain containing 67##AY162216|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_152313|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##BC047374|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##AF197137|C11orf75|56935|chromosome 11 open reading frame 75##BC031564|C11orf75|56935|chromosome 11 open reading frame 75##NM_020179|C11orf75|56935|chromosome 11 open reading frame 75##NM_033395|KIAA1731|85459|KIAA1731##BC015989|KIAA1731|85459|KIAA1731##BC017394|KIAA1731|85459|KIAA1731##AB051518|KIAA1731|85459|KIAA1731	0.591464	0.0	denovo_WM_7:-8:0.487
chr12	26578581	26578698	reg1009034.p1	5.585	+	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-230054	+	NM_001135823 AK092925 TSC_hg19_v1_chr12_+_26348312	-230348	+	TSC_hg19_v1_chr12_-_26277832 AY665467 AK303677 AB044088 BC025968 NM_030762	-300718	-	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	407441	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	512270	-	TSC_hg19_v1_chr12_-_27091213 NM_018164	512591	-	AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_001135823|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK092925|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AY665467|BHLHE41|79365|basic helix-loop-helix family, member e41##AK303677|BHLHE41|79365|basic helix-loop-helix family, member e41##AB044088|BHLHE41|79365|basic helix-loop-helix family, member e41##BC025968|BHLHE41|79365|basic helix-loop-helix family, member e41##NM_030762|BHLHE41|79365|basic helix-loop-helix family, member e41##AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)	0.965292	0.0	denovo_WM_7:-27:0.347	denovo_WM_7:-29:0.346
chr19	13214976	13215128	reg1007290.p1	5.585	+	NM_005583	-1079	-	TSC_hg19_v1_chr19_-_13213673 BC002796	-1355	-	TSC_hg19_v1_chr19_-_13213530 AK311530 M22637	-1526	-	AF196479 AB590553 CU676232 CU677996 BC002492 BC040126 BC018302 NM_001142554 NM_017722 TSC_hg19_v1_chr19_-_13227551 AK000251 AK304636 AK295245 AK292377 NM_001136035	12341	-	TSC_hg19_v1_chr19_+_13229102 NM_052876 BC055396 AF395817	14073	+	TSC_hg19_v1_chr19_+_13250072 AK123056	35065	+	NM_005583|LYL1|4066|lymphoblastic leukemia derived sequence 1##BC002796|LYL1|4066|lymphoblastic leukemia derived sequence 1##M22637|LYL1|4066|lymphoblastic leukemia derived sequence 1##AF196479|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##BC002492|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##BC040126|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##BC018302|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_001142554|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_017722|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK000251|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK304636|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK295245|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK292377|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_001136035|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_052876|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing##BC055396|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing##AF395817|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing##AK123056|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1.022195	0.0	
chr2	64925911	64925977	reg1006502.p2	5.585	+	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-44897	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-45095	-	TSC_hg19_v1_chr2_+_64751580 AL833962	-174342	+	TSC_hg19_v1_chr2_-_65090764 AK097952	164797	-	TSC_hg19_v1_chr2_-_65159574 BC037562	233633	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	289656	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##AL833962|AFTPH|54812|aftiphilin##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.0	0.0	
chr6	20708702	20708880	reg1008131.p1	5.585	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-174068	+	CR749285 NM_001243076	-304758	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-306688	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	885581	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	957868	+	BC015850 NM_000948	1588938	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.0	
chr10	50391923	50392103	reg1009067.p1	5.584	+	BC029839 BC047597 NM_001164484	-49955	-	TSC_hg19_v1_chr10_-_50323537 BC041414 AK297931 AK056299 NM_001031746 NM_144984	-68490	-	NM_001006939 BC036722	-269733	-	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	4413	-	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	115198	+	NM_001080520	207893	-	BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##BC041414|VSTM4|196740|V-set and transmembrane domain containing 4##AK297931|VSTM4|196740|V-set and transmembrane domain containing 4##AK056299|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001031746|VSTM4|196740|V-set and transmembrane domain containing 4##NM_144984|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001006939|LRRC18|474354|leucine rich repeat containing 18##BC036722|LRRC18|474354|leucine rich repeat containing 18##DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##NM_001080520|DRGX|644168|dorsal root ganglia homeobox	0.975133	0.0	denovo_WM_7:-17:0.751
chr20	33998556	33998702	reg1005787.p1	5.584	+	BC113483 AK091116 AX746786 NM_178468	-118416	-	TSC_hg19_v1_chr20_-_33872580 BC001119 AF047433 NM_002212 NM_181466 AK314969	-126033	-	NM_181468 TSC_hg19_v1_chr20_-_33872566 AB062289 BC019305 Y11435 AK296076 BC095465 BC011845	-126092	-	BC008871 AB528278 AM392884 AM393853 TSC_hg19_v1_chr20_-_33999777 AK001712 AK022650 AK022742 AK225557 AK293516 AK300130 AK302133 AK308819 BC105791	1140	-	TSC_hg19_v1_chr20_-_33999791 AK225281 AK293149 BC119013 BC122862 AY050659 NM_001184977 NM_018244 NM_199487	1233	-	AB593125 U13660 NM_000557	27361	-	BC113483|FAM83C|128876|family with sequence similarity 83, member C##AK091116|FAM83C|128876|family with sequence similarity 83, member C##NM_178468|FAM83C|128876|family with sequence similarity 83, member C##BC001119|EIF6|3692|eukaryotic translation initiation factor 6##AF047433|EIF6|3692|eukaryotic translation initiation factor 6##NM_002212|EIF6|3692|eukaryotic translation initiation factor 6##NM_181466|EIF6|3692|eukaryotic translation initiation factor 6##AK314969|EIF6|3692|eukaryotic translation initiation factor 6##NM_181468|EIF6|3692|eukaryotic translation initiation factor 6##AB062289|EIF6|3692|eukaryotic translation initiation factor 6##BC019305|EIF6|3692|eukaryotic translation initiation factor 6##Y11435|EIF6|3692|eukaryotic translation initiation factor 6##AK296076|EIF6|3692|eukaryotic translation initiation factor 6##BC095465|EIF6|3692|eukaryotic translation initiation factor 6##BC011845|EIF6|3692|eukaryotic translation initiation factor 6##BC008871|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM392884|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM393853|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK001712|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022650|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022742|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225557|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293516|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK300130|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK302133|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK308819|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC105791|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225281|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293149|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC119013|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC122862|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AY050659|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_001184977|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_018244|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_199487|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5	0.998398	0.0	
chr8	126274863	126274976	reg1006981.p1	5.584	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-170822	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-170862	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-170897	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	167660	+	TSC_hg19_v1_chr8_-_126963395 BX648371	688494	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1295636	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.037392	0.0	
chr10	120860586	120860686	reg1008310.p1	5.583	+	AK307610 AK307610 TSC_hg19_v1_chr10_-_120840323 D50929 D50929 BC064926 BC107776 AK309542 AK309542 NM_003750	-20303	-	TSC_hg19_v1_chr10_-_120840299 U78311 U78311	-20337	-	BC114429 BC114429 TSC_hg19_v1_chr10_-_120840295 U58046 U58046 BC054342 BC033769	-20368	-	TSC_hg19_v1_chr10_+_120863593 AK293365	2944	+	NM_207009 TSC_hg19_v1_chr10_+_120863621	2981	+	TSC_hg19_v1_chr10_+_120863628 AF168713 AK000031 AK297633 AK297971 AK293136 BC022271 CU687018 CU692524	3004	+	AK307610|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK307610|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##D50929|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##D50929|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC064926|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC107776|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK309542|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK309542|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##NM_003750|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U78311|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U78311|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC114429|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC114429|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U58046|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U58046|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC054342|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC033769|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##AK293365|FAM45A|404636|family with sequence similarity 45, member A##NM_207009|FAM45A|404636|family with sequence similarity 45, member A##AF168713|FAM45A|404636|family with sequence similarity 45, member A##AK000031|FAM45A|404636|family with sequence similarity 45, member A##AK297633|FAM45A|404636|family with sequence similarity 45, member A##AK297971|FAM45B|55855|family with sequence similarity 45, member A pseudogene##AK293136|FAM45A|404636|family with sequence similarity 45, member A##BC022271|FAM45A|404636|family with sequence similarity 45, member A	0.99454	0.0	
chr10	97551523	97551685	reg1008683.p1	5.583	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-36064	+	AJ133133 AJ133134 NM_001098175	-80069	+	BC068449 DQ278872 NM_001143973 NM_015631	-97705	-	AK294399 NM_001130446	116117	+	NM_001001732 NM_001159747 AK302377 BC075861	208260	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	251777	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.018862	0.0	
chr8	59521223	59521344	reg1007783.p1	5.582	+	TSC_hg19_v1_chr8_+_59465819 AK298697 AK312274 BC013254	-55454	+	TSC_hg19_v1_chr8_+_59465816 AF006636 AK295198 AK128645	-55476	+	BC113674 BC113676 BC143915 BC143916 TSC_hg19_v1_chr8_+_59465795 AK300647	-55494	+	TSC_hg19_v1_chr8_-_59572096 AK294009 NM_001144772 AK304884	50770	-	TSC_hg19_v1_chr8_-_59572189 X96586	50931	-	TSC_hg19_v1_chr8_-_59572336 AK292679 AK313991	51030	-	AK298697|SDCBP|6386|syndecan binding protein (syntenin)##AK312274|SDCBP|6386|syndecan binding protein (syntenin)##BC013254|SDCBP|6386|syndecan binding protein (syntenin)##AF006636|SDCBP|6386|syndecan binding protein (syntenin)##AK295198|SDCBP|6386|syndecan binding protein (syntenin)##AK128645|SDCBP|6386|syndecan binding protein (syntenin)##BC113674|SDCBP|6386|syndecan binding protein (syntenin)##BC113676|SDCBP|6386|syndecan binding protein (syntenin)##BC143915|SDCBP|6386|syndecan binding protein (syntenin)##BC143916|SDCBP|6386|syndecan binding protein (syntenin)##AK300647|SDCBP|6386|syndecan binding protein (syntenin)##AK294009|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##NM_001144772|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##X96586|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK292679|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK313991|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor	0.0	0.793379	CTCF.p2:27:0.793
chr1	212788016	212788196	reg1000855.p2	5.581	+	AK312998 TSC_hg19_v1_chr1_+_212782105 BC006322 L19871	-5999	+	NM_001040619 NM_001206484 NM_001206488 NM_001674 TSC_hg19_v1_chr1_+_212782102 AK294296	-6071	+	NM_001030287	-49431	+	NM_001206486 AB066566 AB078026 AB078027 AB528347 AY313926 AY313927 BT006996 CR450334 DQ892723 DQ895972 AB209032	301	+	AK301981 NM_153606 BC035007	9695	+	AB463432 HQ258061 TSC_hg19_v1_chr1_-_212873132	85014	-	AK312998|ATF3|467|activating transcription factor 3##BC006322|ATF3|467|activating transcription factor 3##L19871|ATF3|467|activating transcription factor 3##NM_001040619|ATF3|467|activating transcription factor 3##NM_001206484|ATF3|467|activating transcription factor 3##NM_001206488|ATF3|467|activating transcription factor 3##NM_001674|ATF3|467|activating transcription factor 3##AK294296|ATF3|467|activating transcription factor 3##NM_001030287|ATF3|467|activating transcription factor 3##NM_001206486|ATF3|467|activating transcription factor 3##AB066566|ATF3|467|activating transcription factor 3##AB078026|ATF3|467|activating transcription factor 3##AB078027|ATF3|467|activating transcription factor 3##AY313926|ATF3|467|activating transcription factor 3##AY313927|ATF3|467|activating transcription factor 3##BT006996|ATF3|467|activating transcription factor 3##CR450334|ATF3|467|activating transcription factor 3##DQ892723|ATF3|467|activating transcription factor 3##DQ895972|ATF3|467|activating transcription factor 3##AB209032|ATF3|467|activating transcription factor 3##AK301981|FAM71A|149647|family with sequence similarity 71, member A##NM_153606|FAM71A|149647|family with sequence similarity 71, member A##BC035007|FAM71A|149647|family with sequence similarity 71, member A##HQ258061|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3	0.0	0.0	
chr18	59963816	59963922	reg1007704.p1	5.581	+	TSC_hg19_v1_chr18_+_59855176 AB384606	-108659	+	TSC_hg19_v1_chr18_+_59854540 BX648481	-109281	+	TSC_hg19_v1_chr18_+_59854521 AK091160 AX746817 NM_020854	-109344	+	AB209762 AF018253 NM_003839 AB527346	28681	+	NM_017742 TSC_hg19_v1_chr18_+_60190696 BC006340	226885	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	418795	+	BX648481|KIAA1468|57614|KIAA1468##AK091160|KIAA1468|57614|KIAA1468##NM_020854|KIAA1468|57614|KIAA1468##AB209762|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##AF018253|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_003839|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_017742|ZCCHC2|54877|zinc finger, CCHC domain containing 2##BC006340|ZCCHC2|54877|zinc finger, CCHC domain containing 2##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1	0.815541	0.0	denovo_WM_7:-43:0.791
chr19	40447519	40447651	reg1005754.p1	5.581	+	D84239 NM_003890	-7053	-	AK296950 TSC_hg19_v1_chr19_-_40337020 NM_001436	-110550	-	TSC_hg19_v1_chr19_-_40337007 BC019260 AK308649	-110579	-	TSC_hg19_v1_chr19_+_40477090 AF020736 AK313183 NM_006503 NM_153001 BC010396 AK310135 AF038965 BC000343 BC014488 BC018811 U27515 AK290285 DQ891875 DQ894876 BT007232 CU679695	29485	+	NM_178544 AK122968 AK292528 BC045649	55400	+	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	114541	-	D84239|FCGBP|8857|Fc fragment of IgG binding protein##NM_003890|FCGBP|8857|Fc fragment of IgG binding protein##AK296950|FBL|2091|fibrillarin##NM_001436|FBL|2091|fibrillarin##BC019260|FBL|2091|fibrillarin##AK308649|FBL|2091|fibrillarin##AF020736|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK313183|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_006503|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_153001|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC010396|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK310135|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AF038965|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC000343|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC014488|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC018811|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##U27515|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK290285|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ891875|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ894876|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BT007232|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B	0.991191	0.0	denovo_WM_7:-19:0.654	denovo_WM_7:-20:0.253
chr21	16169987	16170163	reg1009379.p1	5.581	+	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	-251426	-	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-414602	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-581578	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	267142	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	932250	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	932466	+	BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25	0.994543	0.0	
chr6	149082595	149082731	reg1007835.p2	5.581	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-14454	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-418472	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-418673	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	556440	+	AK315038 NM_015093 AK307650	556778	+	AY340238 NM_001002255 BC130305 HQ258040	638845	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.983403	0.0	denovo_WM_7:3:0.362	denovo_WM_7:4:0.622
chr6_mann_hap4	4111028	4111204	reg1001651.p2	5.581	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.360147	0.0	denovo_WM_7:19:0.345
chr20	43949871	43950024	reg1007961.p2	5.580	+	BC151219 AK074595 BC141811 AK074597 NM_003833 NM_030590 NM_030592	-13005	-	NM_014276 AB024964 AB026048 AB027710	-14421	+	AF114471 X04503 AB464192 DQ891365 DQ894545 AK312192 X04470 TSC_hg19_v1_chr20_-_43883206 AX772818 BC020708 NM_003064	-66752	-	CR542045 CR542074 DQ890718 DQ893898 AB464261 TSC_hg19_v1_chr20_-_43977065 X67016 AK222695 AK223243 AK303964 AK312507 BC030805 D13292 NM_002999	27108	-	NM_001197129	40629	+	NM_001099791 NM_033542 TSC_hg19_v1_chr20_+_43991822 AK075264 AK172738 AX775821 BC048286 BC023562 AL591714 AK309429	41870	+	BC151219|MATN4|8785|matrilin 4##AK074595|MATN4|8785|matrilin 4##BC141811|MATN4|8785|matrilin 4##AK074597|MATN4|8785|matrilin 4##NM_003833|MATN4|8785|matrilin 4##NM_030590|MATN4|8785|matrilin 4##NM_030592|MATN4|8785|matrilin 4##NM_014276|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB024964|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB026048|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB027710|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AF114471|SLPI|6590|secretory leukocyte peptidase inhibitor##X04503|SLPI|6590|secretory leukocyte peptidase inhibitor##DQ891365|SLPI|6590|secretory leukocyte peptidase inhibitor##DQ894545|SLPI|6590|secretory leukocyte peptidase inhibitor##AK312192|SLPI|6590|secretory leukocyte peptidase inhibitor##X04470|SLPI|6590|secretory leukocyte peptidase inhibitor##AX772818|SLPI|6590|secretory leukocyte peptidase inhibitor##BC020708|SLPI|6590|secretory leukocyte peptidase inhibitor##NM_003064|SLPI|6590|secretory leukocyte peptidase inhibitor##CR542045|SDC4|6385|syndecan 4##CR542074|SDC4|6385|syndecan 4##DQ890718|SDC4|6385|syndecan 4##DQ893898|SDC4|6385|syndecan 4##X67016|SDC4|6385|syndecan 4##AK222695|SDC4|6385|syndecan 4##AK223243|SDC4|6385|syndecan 4##AK303964|SDC4|6385|syndecan 4##AK312507|SDC4|6385|syndecan 4##BC030805|SDC4|6385|syndecan 4##D13292|SDC4|6385|syndecan 4##NM_002999|SDC4|6385|syndecan 4##NM_001197129|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##NM_001099791|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##NM_033542|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##AK075264|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##AK172738|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##BC048286|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##BC023562|SYS1-DBNDD2|767557|SYS1-DBNDD2 readthrough##AL591714|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##AK309429|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	0.990477	0.0	denovo_WM_7:-34:0.293	denovo_WM_7:-37:0.493
chr2	145276831	145277004	reg1008830.p2	5.580	+	TSC_hg19_v1_chr2_-_145275089 BC070275 AK308445 BC035706	-1714	-	AB193095 AB193096 AB463360 TSC_hg19_v1_chr2_-_145274968	-1975	-	BX647773 TSC_hg19_v1_chr2_-_145090075 BX647436 NM_001164629	-186853	-	BC127102 BC127101 TSC_hg19_v1_chr2_-_145277687 BC037975 AK294928 BC060819	714	-	AB011141 BC025696 AB056507 BC025730 TSC_hg19_v1_chr2_-_145277942 NM_001171653 NM_014795	1004	-	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	3325200	+	AK308445|ZEB2|9839|zinc finger E-box binding homeobox 2##BC035706|ZEB2|9839|zinc finger E-box binding homeobox 2##AB193095|ZEB2|9839|zinc finger E-box binding homeobox 2##AB193096|ZEB2|9839|zinc finger E-box binding homeobox 2##BX647773|GTDC1|79712|glycosyltransferase-like domain containing 1##BX647436|GTDC1|79712|glycosyltransferase-like domain containing 1##NM_001164629|GTDC1|79712|glycosyltransferase-like domain containing 1##BC127102|ZEB2|9839|zinc finger E-box binding homeobox 2##BC127101|ZEB2|9839|zinc finger E-box binding homeobox 2##BC037975|ZEB2|9839|zinc finger E-box binding homeobox 2##AK294928|ZEB2|9839|zinc finger E-box binding homeobox 2##BC060819|ZEB2|9839|zinc finger E-box binding homeobox 2##AB011141|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025696|ZEB2|9839|zinc finger E-box binding homeobox 2##AB056507|ZEB2|9839|zinc finger E-box binding homeobox 2##BC025730|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_001171653|ZEB2|9839|zinc finger E-box binding homeobox 2##NM_014795|ZEB2|9839|zinc finger E-box binding homeobox 2##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA	0.0	0.0	
chr3	185264868	185265048	reg1007618.p1	5.580	+	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	-48259	-	BC026249 NM_004721 AK296961 AB001872 BC111726	-184026	+	AK302951 TSC_hg19_v1_chr3_+_185046682 BC031677	-218267	+	CU687970 TSC_hg19_v1_chr3_-_185270374 AK298380 AY036912 AY093498 EF186228 EF186229 BC064941 AK122651 NM_139248	5370	-	AK304402 TSC_hg19_v1_chr3_+_185304106 AF151697 NM_021627 AK296772 AK027599 AK296744 BC040609 CU691906 AB037752 AB385449 AL834380	39125	+	CU676908 DQ892161 EU176689 TSC_hg19_v1_chr3_-_185542803 AK309611 AF117107 BC012322	277816	-	EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK302951|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC031677|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK298380|LIPH|200879|lipase, member H##AY036912|LIPH|200879|lipase, member H##AY093498|LIPH|200879|lipase, member H##EF186228|LIPH|200879|lipase, member H##EF186229|LIPH|200879|lipase, member H##BC064941|LIPH|200879|lipase, member H##AK122651|LIPH|200879|lipase, member H##NM_139248|LIPH|200879|lipase, member H##AK304402|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AF151697|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##NM_021627|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296772|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK027599|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296744|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##BC040609|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AL834380|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##DQ892161|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##EU176689|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK309611|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AF117107|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2	0.985966	0.0	denovo_WM_7:-23:0.817
chr5	138532898	138533078	reg1008915.p1	5.580	+	HQ589335 TSC_hg19_v1_chr5_+_138211097	-321897	+	TSC_hg19_v1_chr5_-_138211057 NM_015564	-321929	-	AK309790 TSC_hg19_v1_chr5_-_138211025 AB007876 BC028172 AK291064 AK297332	-321975	-	AF547994 TSC_hg19_v1_chr5_-_138533996 AK075177	1001	-	TSC_hg19_v1_chr5_-_138533998 AY358950 BC011568	1020	-	TSC_hg19_v1_chr5_-_138534058 AJ299442 AK074624 NM_001037633 NM_022464	1058	-	HQ589335|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##NM_015564|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK309790|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AB007876|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##BC028172|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK291064|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK297332|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AF547994|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK075177|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AY358950|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##BC011568|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AJ299442|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK074624|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_001037633|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_022464|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)	0.99846	0.0	
chr11	67213723	67213852	reg1001378.p1	5.579	+	NM_001018070	-2496	-	TSC_hg19_v1_chr11_-_67210953 AB209579 AK309267 AK000860 NM_020441	-2820	-	TSC_hg19_v1_chr11_-_67210939 BC006449 AK315399 AK295782	-2858	-	AY569571 BC119779 BC122869 NM_206997	6412	-	AY039217 NM_145200	9030	+	AK310743 TSC_hg19_v1_chr11_-_67236717 AK296988 AY007143 BC013883 BC051854 BC125134 AK303342 NM_001078650 NM_001078651 NM_025124 AK025402	22914	-	NM_001018070|CORO1B|57175|coronin, actin binding protein, 1B##AK309267|CORO1B|57175|coronin, actin binding protein, 1B##AK000860|CORO1B|57175|coronin, actin binding protein, 1B##NM_020441|CORO1B|57175|coronin, actin binding protein, 1B##BC006449|CORO1B|57175|coronin, actin binding protein, 1B##AK315399|CORO1B|57175|coronin, actin binding protein, 1B##AK295782|CORO1B|57175|coronin, actin binding protein, 1B##AY569571|GPR152|390212|G protein-coupled receptor 152##BC119779|GPR152|390212|G protein-coupled receptor 152##BC122869|GPR152|390212|G protein-coupled receptor 152##NM_206997|GPR152|390212|G protein-coupled receptor 152##AY039217|CABP4|57010|calcium binding protein 4##NM_145200|CABP4|57010|calcium binding protein 4##AK310743|TMEM134|80194|transmembrane protein 134##AK296988|TMEM134|80194|transmembrane protein 134##AY007143|TMEM134|80194|transmembrane protein 134##BC013883|TMEM134|80194|transmembrane protein 134##BC051854|TMEM134|80194|transmembrane protein 134##BC125134|TMEM134|80194|transmembrane protein 134##AK303342|TMEM134|80194|transmembrane protein 134##NM_001078650|TMEM134|80194|transmembrane protein 134##NM_001078651|TMEM134|80194|transmembrane protein 134##NM_025124|TMEM134|80194|transmembrane protein 134##AK025402|TMEM134|80194|transmembrane protein 134	0.9987	0.0	
chr2	158269767	158269947	reg1004092.p1	5.579	+	NM_001009959 AK296477	-85701	-	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	-87573	-	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	-155564	+	L06633 AB528875 CU690346 AF068836 BC036449 TSC_hg19_v1_chr2_-_158300602 AK312753 NM_004288	30707	-	TSC_hg19_v1_chr2_-_158454049 AF525679 NM_001111031	184218	-	AB590288 CU692676 DQ895570 EU176205 AF525680 AF525681 AY127050 TSC_hg19_v1_chr2_-_158485239	215341	-	NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##L06633|CYTIP|9595|cytohesin 1 interacting protein##AF068836|CYTIP|9595|cytohesin 1 interacting protein##BC036449|CYTIP|9595|cytohesin 1 interacting protein##AK312753|CYTIP|9595|cytohesin 1 interacting protein##NM_004288|CYTIP|9595|cytohesin 1 interacting protein##AF525679|ACVR1C|130399|activin A receptor, type IC##NM_001111031|ACVR1C|130399|activin A receptor, type IC##DQ895570|ACVR1C|130399|activin A receptor, type IC##EU176205|ACVR1C|130399|activin A receptor, type IC##AF525680|ACVR1C|130399|activin A receptor, type IC##AF525681|ACVR1C|130399|activin A receptor, type IC##AY127050|ACVR1C|130399|activin A receptor, type IC	0.0	0.0	
chr5	138838457	138838561	reg1008694.p1	5.579	+	NM_152686 TSC_hg19_v1_chr5_-_138775215	-63294	-	AK308138 TSC_hg19_v1_chr5_-_138775199	-63315	-	BC030162 TSC_hg19_v1_chr5_-_138775145 AK024054	-63358	-	AK304726 BC146912 BC146913 DQ462572 NM_001077693 EU025066 TSC_hg19_v1_chr5_-_138842329	3801	-	TSC_hg19_v1_chr5_-_138862306 AK095896 AX775913 BC047779 AK290661	23763	-	NM_198282 TSC_hg19_v1_chr5_-_138862344	23834	-	NM_152686|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##AK308138|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##BC030162|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##BC146912|ECSCR|641700|endothelial cell-specific chemotaxis regulator##BC146913|ECSCR|641700|endothelial cell-specific chemotaxis regulator##DQ462572|ECSCR|641700|endothelial cell-specific chemotaxis regulator##NM_001077693|ECSCR|641700|endothelial cell-specific chemotaxis regulator##EU025066|ECSCR|641700|endothelial cell-specific chemotaxis regulator##AK095896|TMEM173|340061|transmembrane protein 173##AX775913|TMEM173|340061|transmembrane protein 173##BC047779|TMEM173|340061|transmembrane protein 173##AK290661|TMEM173|340061|transmembrane protein 173##NM_198282|TMEM173|340061|transmembrane protein 173	1.114942	0.0	denovo_WM_7:-70:0.783
chr3	129244989	129245158	reg1006436.p1	5.578	+	TSC_hg19_v1_chr3_+_129159160 AK298526 AK299903 CU678342 EU832629 EU832704	-85911	+	BC028353 TSC_hg19_v1_chr3_+_129159138	-85935	+	TSC_hg19_v1_chr3_+_129159089 AF302154	-85961	+	NM_000539 BX537381 BC112104 BC112106 AB464154 AM392780	2454	+	AY158091 NM_153833	16983	+	TSC_hg19_v1_chr3_-_129325518 NM_015103 AB014520 AY116661 BC150280	80366	-	AK298526|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##AK299903|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##EU832629|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##EU832704|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##BC028353|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##AF302154|IFT122|55764|intraflagellar transport 122 homolog (Chlamydomonas)##NM_000539|RHO|6010|rhodopsin##BX537381|RHO|6010|rhodopsin##BC112104|RHO|6010|rhodopsin##BC112106|RHO|6010|rhodopsin##AM392780|RHO|6010|rhodopsin##AY158091|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_153833|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_015103|PLXND1|23129|plexin D1##AB014520|PLXND1|23129|plexin D1##AY116661|PLXND1|23129|plexin D1##BC150280|PLXND1|23129|plexin D1	0.032748	0.0	
chr4	118170566	118170699	reg1005302.p1	5.578	+	AK074617 BC030831 NM_152402	-163899	-	BC113075 BC012326 AK289670 AB036429 NM_022569	-2135651	-	NM_003360 U30930	-2627110	+	TSC_hg19_v1_chr4_+_118954764 AY358852	784139	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	784943	+	TSC_hg19_v1_chr4_+_119199912 BC017993 BC039555	1029285	+	AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC017993|SNHG8|100093630|small nucleolar RNA host gene 8 (non-protein coding)##BC039555|SNHG8|100093630|small nucleolar RNA host gene 8 (non-protein coding)	0.044097	0.0	
chr8	119512191	119512307	reg1006839.p2	5.578	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-388288	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-979207	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-979291	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	121876	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	121958	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	451971	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	1.014316	0.0	
chr1	159897759	159897922	reg1002180.p2	5.577	+	TSC_hg19_v1_chr1_-_159895294 BC002616 D21261 GU727636 NM_003564 AK291562 AK298654	-2553	-	BC009357 TSC_hg19_v1_chr1_-_159895269	-2575	-	BC089391 BC027874 NM_012337 BC064386 AF094758 AK308262 AK225566 AK225582 AK292249	-27915	-	TSC_hg19_v1_chr1_-_159915401 AB037776 BC030141 NM_001135050 NM_020789 AY358128	17554	-	BC074754 BC070213 AY358801 AF275725 AY034613 NM_001146172 NM_001146173 NM_033438	26162	-	CU676470 TSC_hg19_v1_chr1_-_160001654 BC001803	103756	-	BC002616|TAGLN2|8407|transgelin 2##D21261|TAGLN2|8407|transgelin 2##GU727636|TAGLN2|8407|transgelin 2##NM_003564|TAGLN2|8407|transgelin 2##AK291562|TAGLN2|8407|transgelin 2##AK298654|TAGLN2|8407|transgelin 2##BC009357|TAGLN2|8407|transgelin 2##BC089391|CCDC19|25790|coiled-coil domain containing 19##BC027874|CCDC19|25790|coiled-coil domain containing 19##NM_012337|CCDC19|25790|coiled-coil domain containing 19##BC064386|CCDC19|25790|coiled-coil domain containing 19##AF094758|CCDC19|25790|coiled-coil domain containing 19##AK308262|CCDC19|25790|coiled-coil domain containing 19##AK225566|CCDC19|25790|coiled-coil domain containing 19##AK225582|CCDC19|25790|coiled-coil domain containing 19##AK292249|CCDC19|25790|coiled-coil domain containing 19##AB037776|IGSF9|57549|immunoglobulin superfamily, member 9##BC030141|IGSF9|57549|immunoglobulin superfamily, member 9##NM_001135050|IGSF9|57549|immunoglobulin superfamily, member 9##NM_020789|IGSF9|57549|immunoglobulin superfamily, member 9##AY358128|IGSF9|57549|immunoglobulin superfamily, member 9##BC074754|SLAMF9|89886|SLAM family member 9##BC070213|SLAMF9|89886|SLAM family member 9##AY358801|SLAMF9|89886|SLAM family member 9##AF275725|SLAMF9|89886|SLAM family member 9##AY034613|SLAMF9|89886|SLAM family member 9##NM_001146172|SLAMF9|89886|SLAM family member 9##NM_001146173|SLAMF9|89886|SLAM family member 9##NM_033438|SLAMF9|89886|SLAM family member 9##BC001803|PIGM|93183|phosphatidylinositol glycan anchor biosynthesis, class M	0.0	0.0	
chr1	68122112	68122253	reg1009232.p2	5.577	+	TSC_hg19_v1_chr1_-_67896101 NM_001018067 NM_001018068 NM_001018069 NM_015640	-226065	-	BX647139 TSC_hg19_v1_chr1_-_67896097	-226085	-	TSC_hg19_v1_chr1_-_67896086 AK312256	-226097	-	TSC_hg19_v1_chr1_+_68150883 AK314991 NM_001199741 NM_001199742 NM_001924 M60974 BC011757 DQ008445 EF581092 EF614238	28728	+	TSC_hg19_v1_chr1_+_68151094 AB463698 AM393439 DQ893229 DQ896558	28952	+	AK124028 TSC_hg19_v1_chr1_+_68297985 AK096081	175806	+	NM_001018067|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018068|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018069|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_015640|SERBP1|26135|SERPINE1 mRNA binding protein 1##BX647139|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK314991|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199741|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199742|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001924|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##M60974|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##BC011757|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ008445|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF581092|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF614238|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AM393439|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ893229|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ896558|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AK124028|LOC100289178|100289178|uncharacterized LOC100289178	1.33372	0.0	denovo_WM_7:14:0.234	denovo_WM_7:29:0.238
chr19	42449680	42449860	reg1002506.p3	5.577	+	NM_199002 TSC_hg19_v1_chr19_+_42388510 BC034013 BC067262	-61284	+	TSC_hg19_v1_chr19_+_42387309 U64105	-62452	+	BC064996 TSC_hg19_v1_chr19_+_42387266 NM_004706 NM_198977 BC011726	-62493	+	AF112996 BT019964 CR457214 CR542116 AB590878 AF112202 AJ133534 BC008950 TSC_hg19_v1_chr19_-_42463499	13698	-	TSC_hg19_v1_chr19_-_42463500 NM_006423	13750	-	AK295833 TSC_hg19_v1_chr19_-_42498254	48467	-	NM_199002|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC034013|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC067262|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##U64105|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC064996|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_004706|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_198977|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC011726|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##AF112996|RABAC1|10567|Rab acceptor 1 (prenylated)##BT019964|RABAC1|10567|Rab acceptor 1 (prenylated)##CR457214|RABAC1|10567|Rab acceptor 1 (prenylated)##CR542116|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112202|RABAC1|10567|Rab acceptor 1 (prenylated)##AJ133534|RABAC1|10567|Rab acceptor 1 (prenylated)##BC008950|RABAC1|10567|Rab acceptor 1 (prenylated)##NM_006423|RABAC1|10567|Rab acceptor 1 (prenylated)##AK295833|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide	0.0	0.0	
chr21	26882410	26882590	reg1008779.p1	5.577	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1081432	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4511727	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4511810	+	TSC_hg19_v1_chr21_+_26934442 AF402776	51972	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	97315	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	129153	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.994975	0.0	
chr2	44949245	44949387	reg1006023.p1	5.577	+	NM_024766 TSC_hg19_v1_chr2_+_44589085 BC029359 AK027104 BC053733	-360224	+	AK131463 NM_001171603 NM_001171617	-360345	-	AB007896 TSC_hg19_v1_chr2_-_44588634 BC151236 AK025649 NM_001171606 NM_001171613	-360636	-	AJ012611 NM_005413 AL162671	219730	+	BC024033 TSC_hg19_v1_chr2_-_45236562 AF332197 NM_016932	287234	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	845812	-	NM_024766|CAMKMT|79823|calmodulin-lysine N-methyltransferase##BC029359|CAMKMT|79823|calmodulin-lysine N-methyltransferase##AK027104|CAMKMT|79823|calmodulin-lysine N-methyltransferase##BC053733|CAMKMT|79823|calmodulin-lysine N-methyltransferase##AK131463|PREPL|9581|prolyl endopeptidase-like##NM_001171603|PREPL|9581|prolyl endopeptidase-like##NM_001171617|PREPL|9581|prolyl endopeptidase-like##AB007896|PREPL|9581|prolyl endopeptidase-like##BC151236|PREPL|9581|prolyl endopeptidase-like##AK025649|PREPL|9581|prolyl endopeptidase-like##NM_001171606|PREPL|9581|prolyl endopeptidase-like##NM_001171613|PREPL|9581|prolyl endopeptidase-like##AJ012611|SIX3|6496|SIX homeobox 3##NM_005413|SIX3|6496|SIX homeobox 3##AL162671|SIX3|6496|SIX homeobox 3##BC024033|SIX2|10736|SIX homeobox 2##AF332197|SIX2|10736|SIX homeobox 2##NM_016932|SIX2|10736|SIX homeobox 2##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1	1.793193	0.0	denovo_WM_7:-5:0.629	denovo_WM_7:9:0.677
chr4	181072148	181072328	reg1008628.p2	5.577	+	TSC_hg19_v1_chr4_-_178363633 NM_000027 NM_001171988	-2708595	-	AK303370 TSC_hg19_v1_chr4_-_178363567 BC012392 AK312982	-2708645	-	AB528385 CR541715 DQ891353 DQ894534 M64073 TSC_hg19_v1_chr4_-_178363547 X55762	-2708697	-	TSC_hg19_v1_chr4_+_183065111 AK308489	1992887	+	NM_001080477 HE578284 HE578285	2172916	+	TSC_hg19_v1_chr4_-_183838533 BC001286 BC088357 AK293135 AK313221 AK310788	2766292	-	NM_000027|AGA|175|aspartylglucosaminidase##NM_001171988|AGA|175|aspartylglucosaminidase##AK303370|AGA|175|aspartylglucosaminidase##BC012392|AGA|175|aspartylglucosaminidase##AK312982|AGA|175|aspartylglucosaminidase##CR541715|AGA|175|aspartylglucosaminidase##DQ891353|AGA|175|aspartylglucosaminidase##DQ894534|AGA|175|aspartylglucosaminidase##M64073|AGA|175|aspartylglucosaminidase##X55762|AGA|175|aspartylglucosaminidase##AK308489|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##NM_001080477|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##BC001286|DCTD|1635|dCMP deaminase##BC088357|DCTD|1635|dCMP deaminase##AK293135|DCTD|1635|dCMP deaminase##AK313221|DCTD|1635|dCMP deaminase##AK310788|DCTD|1635|dCMP deaminase	0.995781	0.014771	denovo_WM_7:-5:0.779
chr7	116870718	116870876	reg1007439.p1	5.577	+	TSC_hg19_v1_chr7_+_116660294 AY009152 AY009153 AK297510	-210432	+	TSC_hg19_v1_chr7_+_116660271 AK093212	-210530	+	AK292372 BC030954 TSC_hg19_v1_chr7_+_116593554 AK298540 CU687306 CU689046 DQ892647 DQ895886	-277224	+	BC078170 AK056742 NM_003391 X07876	92538	-	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	196748	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	249241	+	AY009152|ST7|7982|suppression of tumorigenicity 7##AY009153|ST7|7982|suppression of tumorigenicity 7##AK297510|ST7|7982|suppression of tumorigenicity 7##AK093212|ST7|7982|suppression of tumorigenicity 7##AK292372|ST7|7982|suppression of tumorigenicity 7##BC030954|ST7|7982|suppression of tumorigenicity 7##AK298540|ST7|7982|suppression of tumorigenicity 7##DQ892647|ST7|7982|suppression of tumorigenicity 7##DQ895886|ST7|7982|suppression of tumorigenicity 7##BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)	1.775421	0.0	denovo_WM_7:27:0.836	denovo_WM_7:43:0.607
chr8	42134627	42134747	reg1008885.p2	5.577	+	BC090865 TSC_hg19_v1_chr8_+_42128868 AF080158 AK298241 AB209090 BC108694 AK290952 BC144080 BX648165	-5772	+	TSC_hg19_v1_chr8_+_42128835 AK302723 AK303294 AK316418 BC006231 AK091297 AK309052	-5852	+	TSC_hg19_v1_chr8_+_42128832 AK303528	-5860	+	NM_002690 AK223537 TSC_hg19_v1_chr8_+_42196014 BC100288 AK294025 AK314976 D29013 M13140 BC106909 AB464039 CR536503 CR541802 L11607	61370	+	AB017788 BC107046 BC107047 AF177397 NM_014420 AK311714 AK301609	99965	-	NM_001135694 NM_005662 TSC_hg19_v1_chr8_+_42249355	114631	+	BC090865|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AF080158|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK298241|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AB209090|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC108694|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK290952|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC144080|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BX648165|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK302723|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK303294|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK316418|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC006231|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK091297|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK303528|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_002690|POLB|5423|polymerase (DNA directed), beta##AK223537|POLB|5423|polymerase (DNA directed), beta##BC100288|POLB|5423|polymerase (DNA directed), beta##AK294025|POLB|5423|polymerase (DNA directed), beta##AK314976|POLB|5423|polymerase (DNA directed), beta##D29013|POLB|5423|polymerase (DNA directed), beta##M13140|POLB|5423|polymerase (DNA directed), beta##BC106909|POLB|5423|polymerase (DNA directed), beta##CR536503|POLB|5423|polymerase (DNA directed), beta##CR541802|POLB|5423|polymerase (DNA directed), beta##L11607|POLB|5423|polymerase (DNA directed), beta##AB017788|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107046|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107047|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AF177397|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_014420|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AK301609|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_001135694|VDAC3|7419|voltage-dependent anion channel 3##NM_005662|VDAC3|7419|voltage-dependent anion channel 3	0.995886	0.0	
chr11	124616564	124616744	reg1008493.p1	5.576	+	TSC_hg19_v1_chr11_+_124609854 Y09689 BC002835 BT007325	-6744	+	TSC_hg19_v1_chr11_+_124609837 NM_001126181 NM_006176 U89165	-6847	+	AF300796 NM_001199922	-70456	-	EU176386 EU176732 TSC_hg19_v1_chr11_-_124622053	5389	-	TSC_hg19_v1_chr11_-_124622090 AK000460 BC007313 NM_014312	5442	-	AY358897 TSC_hg19_v1_chr11_-_124622152 BC012567	5497	-	Y09689|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##BC002835|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##BT007325|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##NM_001126181|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##NM_006176|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##U89165|NRGN|4900|neurogranin (protein kinase C substrate, RC3)##AF300796|SIAE|54414|sialic acid acetylesterase##NM_001199922|SIAE|54414|sialic acid acetylesterase##EU176386|VSIG2|23584|V-set and immunoglobulin domain containing 2##EU176732|VSIG2|23584|V-set and immunoglobulin domain containing 2##AK000460|VSIG2|23584|V-set and immunoglobulin domain containing 2##BC007313|VSIG2|23584|V-set and immunoglobulin domain containing 2##NM_014312|VSIG2|23584|V-set and immunoglobulin domain containing 2##AY358897|VSIG2|23584|V-set and immunoglobulin domain containing 2##BC012567|VSIG2|23584|V-set and immunoglobulin domain containing 2	0.0	0.010951	
chr12	133344667	133344847	reg1008508.p1	5.576	+	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-6337	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-38199	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	-57321	+	BC048203 TSC_hg19_v1_chr12_-_133372555	27800	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	60222	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	60541	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3	0.813229	0.0	denovo_WM_7:-1:0.793
chr18	20912452	20912612	reg1008248.p2	5.576	+	BC037218 NM_138375	-176744	+	EF028204 NM_001100619	-196806	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-398717	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	105339	-	AK057292 NM_003831	120254	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	120714	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.0	0.0	
chr20	52516372	52516485	reg1009148.p2	5.576	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-305629	-	AF041259 NM_006526	-316793	-	AK302570 NM_001193421	-714607	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	170634	-	AK315220 NM_003657	170875	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	274092	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr20	52633841	52634001	reg1003714.p1	5.576	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-423122	-	AF041259 NM_006526	-434286	-	AK302570 NM_001193421	-832100	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	53141	-	AK315220 NM_003657	53382	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	156599	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.013748	0.0	denovo_WM_7:24:0.662
chr4	148613740	148613848	reg1009524.p1	5.576	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	-8530	-	TSC_hg19_v1_chr4_+_148538568 AK001708	-75188	+	TSC_hg19_v1_chr4_+_148538547 BC046128 NM_018241	-75261	+	TSC_hg19_v1_chr4_+_148653238 AK123785	39457	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	39663	+	TSC_hg19_v1_chr4_-_149357955 AB587357	744188	-	BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK001708|TMEM184C|55751|transmembrane protein 184C##BC046128|TMEM184C|55751|transmembrane protein 184C##NM_018241|TMEM184C|55751|transmembrane protein 184C##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10	0.992602	0.023881	denovo_WM_7:-49:0.778
chr1	154470049	154470169	reg1007778.p2	5.575	+	TSC_hg19_v1_chr1_+_154378074 AK293013 X58298 AK312730 BC035327 AB527867 HQ258435 HQ258616	-92035	+	AK223582 BC132684 BC132686 TSC_hg19_v1_chr1_+_154377856	-92257	+	NM_000565 NM_001206866 NM_181359 X12830 BC089410 TSC_hg19_v1_chr1_+_154377822	-92359	+	BC143765 BC117210 NM_001010846	4415	-	BC044864 NM_001098475 NM_182499	4585	+	BC107057 AY112698 TSC_hg19_v1_chr1_-_154531132 AY948200 NM_017582	61000	-	AK293013|IL6R|3570|interleukin 6 receptor##X58298|IL6R|3570|interleukin 6 receptor##AK312730|IL6R|3570|interleukin 6 receptor##BC035327|IL6R|3570|interleukin 6 receptor##HQ258435|IL6R|3570|interleukin 6 receptor##HQ258616|IL6R|3570|interleukin 6 receptor##AK223582|IL6R|3570|interleukin 6 receptor##BC132684|IL6R|3570|interleukin 6 receptor##BC132686|IL6R|3570|interleukin 6 receptor##NM_000565|IL6R|3570|interleukin 6 receptor##NM_001206866|IL6R|3570|interleukin 6 receptor##NM_181359|IL6R|3570|interleukin 6 receptor##X12830|IL6R|3570|interleukin 6 receptor##BC089410|IL6R|3570|interleukin 6 receptor##BC143765|SHE|126669|Src homology 2 domain containing E##BC117210|SHE|126669|Src homology 2 domain containing E##NM_001010846|SHE|126669|Src homology 2 domain containing E##BC044864|TDRD10|126668|tudor domain containing 10##NM_001098475|TDRD10|126668|tudor domain containing 10##NM_182499|TDRD10|126668|tudor domain containing 10##BC107057|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY112698|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY948200|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##NM_017582|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1	0.967797	0.0	denovo_WM_7:57:0.968
chr11	69029125	69029274	reg1009374.p2	5.575	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-171673	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-212773	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-212849	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	32423	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	426657	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	426711	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	0.996484	0.0	
chr7	117075807	117075962	reg1008338.p2	5.575	+	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	-8339	-	BC078170 AK056742 NM_003391 X07876	-112549	-	TSC_hg19_v1_chr7_+_116660294 AY009152 AY009153 AK297510	-415519	+	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	44154	+	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	437597	-	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	437659	-	HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##AY009152|ST7|7982|suppression of tumorigenicity 7##AY009153|ST7|7982|suppression of tumorigenicity 7##AK297510|ST7|7982|suppression of tumorigenicity 7##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2	0.0	0.0	
chrX	67682668	67682742	reg1008858.p1	5.575	+	TSC_hg19_v1_chrX_-_67653677 BC059393 NM_002547 AK309665 BC140763 AK295769 AJ001189 AK309696	-29143	-	NM_001011645	-894023	+	TSC_hg19_v1_chrX_+_66766350 M20260	-916334	+	NM_001195214 NM_173834	35918	+	TSC_hg19_v1_chrX_+_67718892 AK095555 AK292835 BC012469 AK303992 AM393755	36183	+	BC035587 NM_001142503 NM_014725 CR749411	184854	+	BC059393|OPHN1|4983|oligophrenin 1##NM_002547|OPHN1|4983|oligophrenin 1##AK309665|OPHN1|4983|oligophrenin 1##BC140763|OPHN1|4983|oligophrenin 1##AK295769|OPHN1|4983|oligophrenin 1##AJ001189|OPHN1|4983|oligophrenin 1##AK309696|OPHN1|4983|oligophrenin 1##NM_001011645|AR|367|androgen receptor##M20260|AR|367|androgen receptor##NM_001195214|YIPF6|286451|Yip1 domain family, member 6##NM_173834|YIPF6|286451|Yip1 domain family, member 6##AK095555|YIPF6|286451|Yip1 domain family, member 6##AK292835|YIPF6|286451|Yip1 domain family, member 6##BC012469|YIPF6|286451|Yip1 domain family, member 6##AK303992|YIPF6|286451|Yip1 domain family, member 6##AM393755|YIPF6|286451|Yip1 domain family, member 6##BC035587|STARD8|9754|StAR-related lipid transfer (START) domain containing 8##NM_001142503|STARD8|9754|StAR-related lipid transfer (START) domain containing 8##NM_014725|STARD8|9754|StAR-related lipid transfer (START) domain containing 8##CR749411|STARD8|9754|StAR-related lipid transfer (START) domain containing 8	0.882627	0.430169	CTCF.p2:8:0.430	denovo_WM_7:-61:0.213	denovo_WM_7:-72:0.211	denovo_WM_7:-75:0.335
chr1	109583129	109583258	reg1005606.p1	5.574	+	TSC_hg19_v1_chr1_-_109506107 AK090563 AX746511 BC002939 AK293786 NM_001048210 NM_015127	-77116	-	TSC_hg19_v1_chr1_+_109419783 AK295563 BC027732	-163406	+	TSC_hg19_v1_chr1_+_109419606 AB445462 NM_013296 AK314249	-163582	+	TSC_hg19_v1_chr1_-_109584725 AK225781 AB020700 AK289789 BC039254 BC034964 NM_001142550 NM_001142551 NM_014969	1526	-	AB587451 TSC_hg19_v1_chr1_-_109618626 X84003 BC017821 BC121180 BC121181 AK312158 NM_005645	35408	-	BC066918 AK075191 TSC_hg19_v1_chr1_+_109633380 AF164793 AK310192 BC008739 BC065186 NM_020141 AK291293 BC067116	50201	+	AK090563|CLCC1|23155|chloride channel CLIC-like 1##BC002939|CLCC1|23155|chloride channel CLIC-like 1##AK293786|AKNAD1|254268|AKNA domain containing 1##NM_001048210|CLCC1|23155|chloride channel CLIC-like 1##NM_015127|CLCC1|23155|chloride channel CLIC-like 1##AK295563|GPSM2|29899|G-protein signaling modulator 2##BC027732|GPSM2|29899|G-protein signaling modulator 2##AB445462|GPSM2|29899|G-protein signaling modulator 2##NM_013296|GPSM2|29899|G-protein signaling modulator 2##AK314249|GPSM2|29899|G-protein signaling modulator 2##AK225781|WDR47|22911|WD repeat domain 47##AB020700|WDR47|22911|WD repeat domain 47##AK289789|WDR47|22911|WD repeat domain 47##BC039254|WDR47|22911|WD repeat domain 47##BC034964|WDR47|22911|WD repeat domain 47##NM_001142550|WDR47|22911|WD repeat domain 47##NM_001142551|WDR47|22911|WD repeat domain 47##NM_014969|WDR47|22911|WD repeat domain 47##X84003|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121180|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121181|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##AK312158|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##NM_005645|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC066918|TMEM167B|56900|transmembrane protein 167B##AK075191|TMEM167B|56900|transmembrane protein 167B##AF164793|TMEM167B|56900|transmembrane protein 167B##AK310192|TMEM167B|56900|transmembrane protein 167B##BC008739|TMEM167B|56900|transmembrane protein 167B##BC065186|TMEM167B|56900|transmembrane protein 167B##NM_020141|TMEM167B|56900|transmembrane protein 167B##AK291293|TMEM167B|56900|transmembrane protein 167B##BC067116|TMEM167B|56900|transmembrane protein 167B	0.99751	0.0	denovo_WM_7:-47:0.976
chr11	126173201	126173314	reg1007465.p2	5.573	+	TSC_hg19_v1_chr11_+_126152988 AK124298 NM_001039661 NM_148910 AK313147 AF378129 AF410783 BC032474	-20258	+	TSC_hg19_v1_chr11_+_126139078 AL136923 AK023987 AK295428 AK298010 AK302039 BC013902 AB527252 AM393709 CU680696 AK295267	-34181	+	TSC_hg19_v1_chr11_+_126139036 AK298807 AF103801	-34222	+	AF532613 NM_014026	389	+	TSC_hg19_v1_chr11_+_126173950 AY040771 AK026554 AK223089	689	+	TSC_hg19_v1_chr11_+_126173954 AK307403 BC014532 AF077201 CU677035 AY077684	712	+	AK124298|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##NM_001039661|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##NM_148910|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##AK313147|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##AF378129|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##AF410783|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##BC032474|TIRAP|114609|toll-interleukin 1 receptor (TIR) domain containing adaptor protein##AL136923|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AK023987|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AK295428|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AK298010|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AK302039|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##BC013902|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AM393709|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AK295267|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AK298807|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AF103801|FOXRED1|55572|FAD-dependent oxidoreductase domain containing 1##AF532613|DCPS|28960|decapping enzyme, scavenger##NM_014026|DCPS|28960|decapping enzyme, scavenger##AY040771|DCPS|28960|decapping enzyme, scavenger##AK026554|DCPS|28960|decapping enzyme, scavenger##AK223089|DCPS|28960|decapping enzyme, scavenger##AK307403|DCPS|28960|decapping enzyme, scavenger##BC014532|DCPS|28960|decapping enzyme, scavenger##AF077201|DCPS|28960|decapping enzyme, scavenger##AY077684|DCPS|28960|decapping enzyme, scavenger	1.828833	0.0	denovo_WM_7:-20:0.276	denovo_WM_7:-22:0.317	denovo_WM_7:-37:0.486
chr16	57573272	57573411	reg1006474.p1	5.573	+	BC008285 BC009941 NM_033212	-2876	-	BC003541 TSC_hg19_v1_chr16_-_57520403 NM_018110 AK001350	-52956	-	TSC_hg19_v1_chr16_+_57496590 BC003159 AK300124 AK293112 BC028157 AJ224143 AJ224144 J05448 BC000409 AB464040 AF008443 CR542041 DQ891411 DQ894586 EU176305	-76736	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	3213	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	3247	+	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	80314	+	BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##BC003541|DOK4|55715|docking protein 4##NM_018110|DOK4|55715|docking protein 4##AK001350|DOK4|55715|docking protein 4##BC003159|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK300124|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK293112|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC028157|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224143|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AJ224144|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##J05448|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##BC000409|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AF008443|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##CR542041|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ891411|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##DQ894586|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##EU176305|POLR2C|5432|polymerase (RNA) II (DNA directed) polypeptide C, 33kDa##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56	0.99566	0.0	denovo_WM_7:33:0.456	denovo_WM_7:34:0.456
chr17	76534209	76534364	reg1008318.p1	5.573	+	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-159556	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-178129	-	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-306823	+	NM_173628	39189	-	AK316277 TSC_hg19_v1_chr17_-_76719649	185361	-	TSC_hg19_v1_chr17_-_76719676 AK293894	185465	-	AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	1.109016	0.0	
chr3	23987885	23987997	reg1007820.p1	5.573	+	TSC_hg19_v1_chr3_+_23987516 AK301925 NM_001145425	-379	+	TSC_hg19_v1_chr3_+_23986776 NM_005126 D16815 AK313464 BC045613 BC070035	-1126	+	NM_001253380 AY347528 L25899 AB529129 BT019672 CU677095 CU687134	-28669	+	GQ456948 GQ456949 GQ869479 GQ919288 AY286469 AY286468 AY286465 AY286471 TSC_hg19_v1_chr3_-_24536294 AY286467 AY286466 AK096628 M26747 NM_000461 NM_001128176 NM_001128177 NM_001252634 X04707	548303	-	AY286470 TSC_hg19_v1_chr3_-_24536493	548536	-	TSC_hg19_v1_chr3_+_25469751 AF157483 NM_016152	1481818	+	AK301925|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001145425|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_005126|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##D16815|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##AK313464|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC045613|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC070035|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001253380|RPL15|6138|ribosomal protein L15##AY347528|RPL15|6138|ribosomal protein L15##L25899|RPL15|6138|ribosomal protein L15##BT019672|RPL15|6138|ribosomal protein L15##GQ456948|THRB|7068|thyroid hormone receptor, beta##GQ456949|THRB|7068|thyroid hormone receptor, beta##GQ869479|THRB|7068|thyroid hormone receptor, beta##GQ919288|THRB|7068|thyroid hormone receptor, beta##AY286469|THRB|7068|thyroid hormone receptor, beta##AY286468|THRB|7068|thyroid hormone receptor, beta##AY286465|THRB|7068|thyroid hormone receptor, beta##AY286471|THRB|7068|thyroid hormone receptor, beta##AY286467|THRB|7068|thyroid hormone receptor, beta##AY286466|THRB|7068|thyroid hormone receptor, beta##AK096628|THRB|7068|thyroid hormone receptor, beta##M26747|THRB|7068|thyroid hormone receptor, beta##NM_000461|THRB|7068|thyroid hormone receptor, beta##NM_001128176|THRB|7068|thyroid hormone receptor, beta##NM_001128177|THRB|7068|thyroid hormone receptor, beta##NM_001252634|THRB|7068|thyroid hormone receptor, beta##X04707|THRB|7068|thyroid hormone receptor, beta##AY286470|THRB|7068|thyroid hormone receptor, beta##AF157483|RARB|5915|retinoic acid receptor, beta##NM_016152|RARB|5915|retinoic acid receptor, beta	0.0	0.0	
chr5	142548079	142548185	reg1003690.p2	5.573	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-397824	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-398160	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-470561	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	234691	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	234974	-	BC015610 TSC_hg19_v1_chr5_-_142783214	235079	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.987626	0.0	
chr2	89037178	89037305	reg1007823.p2	5.572	+	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	-46026	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	-110263	-	AK058098 NM_152670 BC029522	-213057	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	28160	+	S49006 TSC_hg19_v1_chr2_-_89165772	128471	-	TSC_hg19_v1_chr2_+_89185057 BC017870 X02990 M38267 AJ004955 S50732 L33854 AJ004956 BC018761 AY204756 M29467 Z46347 Z27174 X72457 AY621626 EU202450 X72474 Z68966 X72492 AF490937	147849	+	NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.989418	0.0	denovo_WM_7:61:0.977
chrX	56800277	56800409	reg1000033.p2	5.572	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-44652	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-210292	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-541433	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	221628	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	347585	-	BC071694 NM_019003	363714	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.11095	0.137902	
chr12	101868126	101868235	reg1007479.p2	5.571	+	TSC_hg19_v1_chr12_-_101801573 AK311793 AK302911 AK299062 BC007000 BX537387 NM_001177	-66637	-	TSC_hg19_v1_chr12_+_101673904 NM_014503 AK307934 AJ006778	-194275	+	AK313788 AF536216 AY081220 NM_145913	-264181	-	AK296681 NM_002465 NM_206819 NM_206820 NM_206821 AK056587 AK292976 AK295727 AK303401 BC015187 BC030980 BC065720 TSC_hg19_v1_chr12_+_101988748 BC092418 X66276 X73114 AL831993 AL832000 AL832332 AL832350 AL832354 AL832456 BC117217 BC143495 BC143502 BC143503 BC143504 AL834249 BX649073 AB385254 AM392734 EU831907 EU832001	120616	+	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	223442	+	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	265039	-	AK311793|ARL1|400|ADP-ribosylation factor-like 1##AK302911|ARL1|400|ADP-ribosylation factor-like 1##AK299062|ARL1|400|ADP-ribosylation factor-like 1##BC007000|ARL1|400|ADP-ribosylation factor-like 1##BX537387|ARL1|400|ADP-ribosylation factor-like 1##NM_001177|ARL1|400|ADP-ribosylation factor-like 1##NM_014503|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK307934|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AJ006778|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK313788|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AF536216|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AY081220|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##NM_145913|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AK296681|MYBPC1|4604|myosin binding protein C, slow type##NM_002465|MYBPC1|4604|myosin binding protein C, slow type##NM_206819|MYBPC1|4604|myosin binding protein C, slow type##NM_206820|MYBPC1|4604|myosin binding protein C, slow type##NM_206821|MYBPC1|4604|myosin binding protein C, slow type##AK056587|MYBPC1|4604|myosin binding protein C, slow type##AK292976|MYBPC1|4604|myosin binding protein C, slow type##AK295727|MYBPC1|4604|myosin binding protein C, slow type##AK303401|MYBPC1|4604|myosin binding protein C, slow type##BC015187|MYBPC1|4604|myosin binding protein C, slow type##BC030980|MYBPC1|4604|myosin binding protein C, slow type##BC065720|MYBPC1|4604|myosin binding protein C, slow type##BC092418|MYBPC1|4604|myosin binding protein C, slow type##X66276|MYBPC1|4604|myosin binding protein C, slow type##X73114|MYBPC1|4604|myosin binding protein C, slow type##AL831993|MYBPC1|4604|myosin binding protein C, slow type##AL832000|MYBPC1|4604|myosin binding protein C, slow type##AL832332|MYBPC1|4604|myosin binding protein C, slow type##AL832350|MYBPC1|4604|myosin binding protein C, slow type##AL832354|MYBPC1|4604|myosin binding protein C, slow type##AL832456|MYBPC1|4604|myosin binding protein C, slow type##BC117217|MYBPC1|4604|myosin binding protein C, slow type##BC143495|MYBPC1|4604|myosin binding protein C, slow type##BC143502|MYBPC1|4604|myosin binding protein C, slow type##BC143503|MYBPC1|4604|myosin binding protein C, slow type##BC143504|MYBPC1|4604|myosin binding protein C, slow type##AL834249|MYBPC1|4604|myosin binding protein C, slow type##BX649073|MYBPC1|4604|myosin binding protein C, slow type##AM392734|MYBPC1|4604|myosin binding protein C, slow type##EU831907|MYBPC1|4604|myosin binding protein C, slow type##EU832001|MYBPC1|4604|myosin binding protein C, slow type##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3	0.0	0.0	
chr12	18359226	18359351	reg1008551.p1	5.571	+	AK026308 BC042888 NM_024730	-116206	-	AF258348 BC017777 AB044746 AK095595 AK308826 NM_001001395 NM_001243609	-1598247	-	AK308594 AK294909 NM_001243613	-1599277	-	NM_004570	55185	+	AF532185 NM_033123 AK314516 AY035866 AK292279	531665	-	BC016745 NM_033328 AB053259 AK058174 CU677705	531832	+	AK026308|RERGL|79785|RERG/RAS-like##BC042888|RERGL|79785|RERG/RAS-like##NM_024730|RERGL|79785|RERG/RAS-like##AF258348|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##BC017777|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AB044746|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK095595|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK308826|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001001395|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001243609|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK308594|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK294909|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001243613|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_004570|PIK3C2G|5288|phosphoinositide-3-kinase, class 2, gamma polypeptide##AF532185|PLCZ1|89869|phospholipase C, zeta 1##NM_033123|PLCZ1|89869|phospholipase C, zeta 1##AK314516|PLCZ1|89869|phospholipase C, zeta 1##AY035866|PLCZ1|89869|phospholipase C, zeta 1##AK292279|PLCZ1|89869|phospholipase C, zeta 1##BC016745|CAPZA3|93661|capping protein (actin filament) muscle Z-line, alpha 3##NM_033328|CAPZA3|93661|capping protein (actin filament) muscle Z-line, alpha 3##AB053259|CAPZA3|93661|capping protein (actin filament) muscle Z-line, alpha 3##AK058174|CAPZA3|93661|capping protein (actin filament) muscle Z-line, alpha 3	0.0	0.0	
chr13	30715169	30715301	reg1007788.p1	5.571	+	TSC_hg19_v1_chr13_-_30424811 NM_007106	-290394	-	TSC_hg19_v1_chr13_-_30424719 AK056580	-290533	-	BC059385 BC044582 TSC_hg19_v1_chr13_-_30424481	-290829	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	165916	-	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	166334	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	324758	-	NM_007106|UBL3|5412|ubiquitin-like 3##AK056580|UBL3|5412|ubiquitin-like 3##BC059385|UBL3|5412|ubiquitin-like 3##BC044582|UBL3|5412|ubiquitin-like 3##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1	1.983108	0.0	denovo_WM_7:-85:0.319	denovo_WM_7:-86:0.257	denovo_WM_7:-103:0.249	denovo_WM_7:-104:0.310
chr15	84596634	84596778	reg1006094.p1	5.571	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-273879	+	TSC_hg19_v1_chr15_+_84116176 BC035598 AF036269 AF036270 AF036271 AF036272 CU692124 X99664	-480478	+	AK309086 NM_003027 TSC_hg19_v1_chr15_+_84116127 AK307442 BC042864	-480646	+	NM_001243531	244535	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	547575	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	600766	-	AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##BC035598|SH3GL3|6457|SH3-domain GRB2-like 3##AF036269|SH3GL3|6457|SH3-domain GRB2-like 3##AF036270|SH3GL3|6457|SH3-domain GRB2-like 3##AF036271|SH3GL3|6457|SH3-domain GRB2-like 3##AF036272|SH3GL3|6457|SH3-domain GRB2-like 3##X99664|SH3GL3|6457|SH3-domain GRB2-like 3##AK309086|SH3GL3|6457|SH3-domain GRB2-like 3##NM_003027|SH3GL3|6457|SH3-domain GRB2-like 3##AK307442|SH3GL3|6457|SH3-domain GRB2-like 3##BC042864|SH3GL3|6457|SH3-domain GRB2-like 3##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73	0.995545	0.0	denovo_WM_7:26:0.655	denovo_WM_7:28:0.209
chr19	19709590	19709657	reg1003030.p1	5.571	+	TSC_hg19_v1_chr19_+_19649101 AK314213 AF542080	-60517	+	AK127735 BC068256 NM_153221 TSC_hg19_v1_chr19_+_19649088	-60551	+	NM_001190328 NM_198537 TSC_hg19_v1_chr19_+_19639680 AK126916 BC020948 AB464360 DQ778079 DQ778080	-69918	+	BC033067 BC143092 AK097427 AK301631 BC143588 BC143589 TSC_hg19_v1_chr19_-_19729548 BC141859 NM_025245	19958	-	AF011466 AK316573 BC025695 AF197929 TSC_hg19_v1_chr19_-_19739025 NM_004720	29384	-	BC126436 BC144142 TSC_hg19_v1_chr19_-_19754416 BC032057 AK297220 AF132541	44770	-	AK314213|CILP2|148113|cartilage intermediate layer protein 2##AF542080|CILP2|148113|cartilage intermediate layer protein 2##AK127735|CILP2|148113|cartilage intermediate layer protein 2##BC068256|CILP2|148113|cartilage intermediate layer protein 2##NM_153221|CILP2|148113|cartilage intermediate layer protein 2##NM_001190328|YJEFN3|374887|YjeF N-terminal domain containing 3##NM_198537|YJEFN3|374887|YjeF N-terminal domain containing 3##AK126916|YJEFN3|374887|YjeF N-terminal domain containing 3##BC020948|YJEFN3|374887|YjeF N-terminal domain containing 3##DQ778079|YJEFN3|374887|YjeF N-terminal domain containing 3##DQ778080|YJEFN3|374887|YjeF N-terminal domain containing 3##BC033067|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143092|PBX4|80714|pre-B-cell leukemia homeobox 4##AK097427|PBX4|80714|pre-B-cell leukemia homeobox 4##AK301631|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143588|PBX4|80714|pre-B-cell leukemia homeobox 4##BC143589|PBX4|80714|pre-B-cell leukemia homeobox 4##BC141859|PBX4|80714|pre-B-cell leukemia homeobox 4##NM_025245|PBX4|80714|pre-B-cell leukemia homeobox 4##AF011466|LPAR2|9170|lysophosphatidic acid receptor 2##AK316573|LPAR2|9170|lysophosphatidic acid receptor 2##BC025695|LPAR2|9170|lysophosphatidic acid receptor 2##AF197929|LPAR2|9170|lysophosphatidic acid receptor 2##NM_004720|LPAR2|9170|lysophosphatidic acid receptor 2##BC126436|GMIP|51291|GEM interacting protein##BC144142|GMIP|51291|GEM interacting protein##BC032057|GMIP|51291|GEM interacting protein##AK297220|GMIP|51291|GEM interacting protein##AF132541|GMIP|51291|GEM interacting protein	0.164801	0.0	
chr6	4022419	4022599	reg1007347.p1	5.571	+	TSC_hg19_v1_chr6_+_4021647 BC034969 NM_003913 AK291244 AB011108 AF283465 AB385345 AY029347	-920	+	BC001261 NM_012135 Y18503	-172883	+	NM_183373 TSC_hg19_v1_chr6_-_3752248	-270263	-	BC039349 NM_173563	56914	-	NM_001085401 BC047663 BC066986	56935	+	BC034702 NM_001166010 TSC_hg19_v1_chr6_-_4135810 AF244138 AF153612 EU832093 EU832185 AF069301 BC033841 AF257175 BC025287 EU832094 EU832186 BC017474 BC008458 AL136642 BC016781 AK222617 BC002668 AK075108 AK223003 AK297049 AK057175 NM_006117 NM_206836	113256	-	BC034969|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##NM_003913|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AK291244|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AB011108|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AF283465|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AY029347|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##BC001261|FAM50B|26240|family with sequence similarity 50, member B##NM_012135|FAM50B|26240|family with sequence similarity 50, member B##Y18503|FAM50B|26240|family with sequence similarity 50, member B##NM_183373|PXDC1|221749|PX domain containing 1##BC039349|C6orf146|222826|chromosome 6 open reading frame 146##NM_173563|C6orf146|222826|chromosome 6 open reading frame 146##NM_001085401|C6orf201|404220|chromosome 6 open reading frame 201##BC047663|C6orf201|404220|chromosome 6 open reading frame 201##BC066986|C6orf201|404220|chromosome 6 open reading frame 201##BC034702|ECI2|10455|enoyl-CoA delta isomerase 2##NM_001166010|ECI2|10455|enoyl-CoA delta isomerase 2##AF244138|ECI2|10455|enoyl-CoA delta isomerase 2##AF153612|ECI2|10455|enoyl-CoA delta isomerase 2##EU832093|ECI2|10455|enoyl-CoA delta isomerase 2##EU832185|ECI2|10455|enoyl-CoA delta isomerase 2##AF069301|ECI2|10455|enoyl-CoA delta isomerase 2##BC033841|ECI2|10455|enoyl-CoA delta isomerase 2##AF257175|ECI2|10455|enoyl-CoA delta isomerase 2##BC025287|ECI2|10455|enoyl-CoA delta isomerase 2##EU832094|ECI2|10455|enoyl-CoA delta isomerase 2##EU832186|ECI2|10455|enoyl-CoA delta isomerase 2##BC017474|ECI2|10455|enoyl-CoA delta isomerase 2##BC008458|ECI2|10455|enoyl-CoA delta isomerase 2##AL136642|ECI2|10455|enoyl-CoA delta isomerase 2##BC016781|ECI2|10455|enoyl-CoA delta isomerase 2##AK222617|ECI2|10455|enoyl-CoA delta isomerase 2##BC002668|ECI2|10455|enoyl-CoA delta isomerase 2##AK075108|ECI2|10455|enoyl-CoA delta isomerase 2##AK223003|ECI2|10455|enoyl-CoA delta isomerase 2##AK297049|ECI2|10455|enoyl-CoA delta isomerase 2##AK057175|ECI2|10455|enoyl-CoA delta isomerase 2##NM_006117|ECI2|10455|enoyl-CoA delta isomerase 2##NM_206836|ECI2|10455|enoyl-CoA delta isomerase 2	1.355262	0.0	denovo_WM_7:35:0.438	denovo_WM_7:36:0.224	denovo_WM_7:37:0.299
chr7	2605914	2606094	reg1008971.p1	5.571	+	AK092404 AX747526 TSC_hg19_v1_chr7_+_2598712 BC061518 AL136792 AK293372	-7257	+	TSC_hg19_v1_chr7_+_2598682 AK309646 BC043150	-7315	+	TSC_hg19_v1_chr7_+_2598649 AK302053	-7349	+	TSC_hg19_v1_chr7_+_2671621 NM_025250 AB051478 BC152447	65599	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	65699	+	AK289723 AB075830 BC146753 NM_133463	113154	+	AK092404|IQCE|23288|IQ motif containing E##BC061518|IQCE|23288|IQ motif containing E##AL136792|IQCE|23288|IQ motif containing E##AK293372|IQCE|23288|IQ motif containing E##AK309646|IQCE|23288|IQ motif containing E##BC043150|IQCE|23288|IQ motif containing E##AK302053|IQCE|23288|IQ motif containing E##NM_025250|TTYH3|80727|tweety homolog 3 (Drosophila)##AB051478|TTYH3|80727|tweety homolog 3 (Drosophila)##BC152447|TTYH3|80727|tweety homolog 3 (Drosophila)##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1	1.989275	0.0	denovo_WM_7:-69:0.837
chr3	148016506	148016677	reg1007836.p1	5.570	+	BC104848 BC104850 TSC_hg19_v1_chr3_+_147127864 AB464362	-888729	+	TSC_hg19_v1_chr3_+_147127156 NM_003412	-889420	+	NM_001243256 NM_032153	-891996	-	NM_000685 NM_004835 NM_009585 NM_031850 TSC_hg19_v1_chr3_+_148415688 AK291541 BC068494 BC022447 M87290 S77410 X65699	399096	+	NM_032049	431375	+	NM_001871 M81057 AK313940 AJ224866 BC015338 DQ890547 DQ893706 BT009910	529007	+	BC104848|ZIC1|7545|Zic family member 1##BC104850|ZIC1|7545|Zic family member 1##NM_003412|ZIC1|7545|Zic family member 1##NM_001243256|ZIC4|84107|Zic family member 4##NM_032153|ZIC4|84107|Zic family member 4##NM_000685|AGTR1|185|angiotensin II receptor, type 1##NM_004835|AGTR1|185|angiotensin II receptor, type 1##NM_009585|AGTR1|185|angiotensin II receptor, type 1##NM_031850|AGTR1|185|angiotensin II receptor, type 1##AK291541|AGTR1|185|angiotensin II receptor, type 1##BC068494|AGTR1|185|angiotensin II receptor, type 1##BC022447|AGTR1|185|angiotensin II receptor, type 1##M87290|AGTR1|185|angiotensin II receptor, type 1##S77410|AGTR1|185|angiotensin II receptor, type 1##X65699|AGTR1|185|angiotensin II receptor, type 1##NM_032049|AGTR1|185|angiotensin II receptor, type 1##NM_001871|CPB1|1360|carboxypeptidase B1 (tissue)##M81057|CPB1|1360|carboxypeptidase B1 (tissue)##AK313940|CPB1|1360|carboxypeptidase B1 (tissue)##AJ224866|CPB1|1360|carboxypeptidase B1 (tissue)##BC015338|CPB1|1360|carboxypeptidase B1 (tissue)##DQ890547|CPB1|1360|carboxypeptidase B1 (tissue)##DQ893706|CPB1|1360|carboxypeptidase B1 (tissue)##BT009910|CPB1|1360|carboxypeptidase B1 (tissue)	0.026293	0.0	
chr1	202798992	202799101	reg1009349.p1	5.569	+	AF087481 NM_006618 TSC_hg19_v1_chr1_-_202777550	-21486	-	TSC_hg19_v1_chr1_-_202777541 AJ132440	-21519	-	TSC_hg19_v1_chr1_-_202776401 AK122752	-22602	-	BC049825 TSC_hg19_v1_chr1_-_202830655 BC040684 AX721218	31636	-	AB464114 BT007133 U74324 TSC_hg19_v1_chr1_-_202858251 S78873 BC018488 BC037392 AK311900 AK223538 NM_002871	59258	-	TSC_hg19_v1_chr1_-_202896338 AF190900 AK223072 BC003183 BC004175	97287	-	AF087481|KDM5B|10765|lysine (K)-specific demethylase 5B##NM_006618|KDM5B|10765|lysine (K)-specific demethylase 5B##AJ132440|KDM5B|10765|lysine (K)-specific demethylase 5B##AK122752|KDM5B|10765|lysine (K)-specific demethylase 5B##BT007133|RABIF|5877|RAB interacting factor##U74324|RABIF|5877|RAB interacting factor##S78873|RABIF|5877|RAB interacting factor##BC018488|RABIF|5877|RAB interacting factor##BC037392|RABIF|5877|RAB interacting factor##AK311900|RABIF|5877|RAB interacting factor##AK223538|RABIF|5877|RAB interacting factor##NM_002871|RABIF|5877|RAB interacting factor##AF190900|KLHL12|59349|kelch-like 12 (Drosophila)##AK223072|KLHL12|59349|kelch-like 12 (Drosophila)##BC003183|KLHL12|59349|kelch-like 12 (Drosophila)##BC004175|KLHL12|59349|kelch-like 12 (Drosophila)	0.996093	0.0	
chr19	18399913	18400022	reg1009910.p1	5.569	+	TSC_hg19_v1_chr19_-_18392451 X56681	-7499	-	TSC_hg19_v1_chr19_-_18392431 BC052571 AK223630 NM_005354	-7543	-	BC169273 TSC_hg19_v1_chr19_-_18392160 X51346	-7862	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	33920	-	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	33999	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	51440	+	X56681|JUND|3727|jun D proto-oncogene##AK223630|JUND|3727|jun D proto-oncogene##NM_005354|JUND|3727|jun D proto-oncogene##BC169273|JUND|3727|jun D proto-oncogene##X51346|JUND|3727|jun D proto-oncogene##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I	1.612355	0.0	denovo_WM_7:-53:0.461	denovo_WM_7:-68:0.305	denovo_WM_7:-69:0.314
chr8	119971407	119971518	reg1008807.p2	5.569	+	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	-7242	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	-337255	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	-337337	-	AK291791 NM_006438 BC103815 BC103816 AY359038 AB002631	108007	+	TSC_hg19_v1_chr8_+_120220616 BC012367 NM_052886 AY007723 AK172820 AK312030 DQ890584 DQ893743	249177	+	NM_002514 AK294289 AK312355 TSC_hg19_v1_chr8_+_120428685 AY082381 X96584 BC015028 CU677181 AB463923 DQ891179 DQ894361 CR457432	457199	+	AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##AK291791|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##NM_006438|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103815|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103816|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AY359038|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AB002631|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC012367|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_052886|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AY007723|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK172820|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK312030|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ890584|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ893743|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_002514|NOV|4856|nephroblastoma overexpressed gene##AK294289|NOV|4856|nephroblastoma overexpressed gene##AK312355|NOV|4856|nephroblastoma overexpressed gene##AY082381|NOV|4856|nephroblastoma overexpressed gene##X96584|NOV|4856|nephroblastoma overexpressed gene##BC015028|NOV|4856|nephroblastoma overexpressed gene##DQ891179|NOV|4856|nephroblastoma overexpressed gene##DQ894361|NOV|4856|nephroblastoma overexpressed gene##CR457432|NOV|4856|nephroblastoma overexpressed gene	0.075219	0.0	
chr2	228347656	228347836	reg1007283.p2	5.568	+	TSC_hg19_v1_chr2_+_228336877 NM_001135187 NM_001135188 NM_001135189 NM_004504 BC030592 X89478 BC096272 BC096273 BC096274 BC096275 AB527534 CU688928	-10740	+	TSC_hg19_v1_chr2_+_228336861 AK097451	-10904	+	AY358671 BC137256 BC137257 BC035754 TSC_hg19_v1_chr2_-_228244023 AK026453 NM_024795	-103732	-	TSC_hg19_v1_chr2_+_228356287 AK295030	8545	+	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	150172	-	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	234975	-	NM_001135187|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135188|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135189|AGFG1|3267|ArfGAP with FG repeats 1##NM_004504|AGFG1|3267|ArfGAP with FG repeats 1##BC030592|AGFG1|3267|ArfGAP with FG repeats 1##X89478|AGFG1|3267|ArfGAP with FG repeats 1##BC096272|AGFG1|3267|ArfGAP with FG repeats 1##BC096273|AGFG1|3267|ArfGAP with FG repeats 1##BC096274|AGFG1|3267|ArfGAP with FG repeats 1##BC096275|AGFG1|3267|ArfGAP with FG repeats 1##AK097451|AGFG1|3267|ArfGAP with FG repeats 1##AY358671|TM4SF20|79853|transmembrane 4 L six family member 20##BC137256|TM4SF20|79853|transmembrane 4 L six family member 20##BC137257|TM4SF20|79853|transmembrane 4 L six family member 20##BC035754|TM4SF20|79853|transmembrane 4 L six family member 20##AK026453|TM4SF20|79853|transmembrane 4 L six family member 20##NM_024795|TM4SF20|79853|transmembrane 4 L six family member 20##AK295030|AGFG1|3267|ArfGAP with FG repeats 1##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3	0.99087	0.0	denovo_WM_7:-39:0.237	denovo_WM_7:-40:0.237	denovo_WM_7:-41:0.237	denovo_WM_7:-42:0.237
chr6	133134103	133134283	reg1006202.p1	5.568	+	AK124442 BC069570 AK293853 TSC_hg19_v1_chr6_-_133119740 NM_052831 AK289918	-14492	-	AK292125 NM_078488 TSC_hg19_v1_chr6_-_133084603	-49598	-	BC064641 AB435062 AB435063 AB435064 AB435065 NM_001242350 HQ258282 HQ258449 AB026705 AJ132100 D89974 NM_004665 AK290908 AK298719 BC126145 BC126147 BC144064	-55192	-	TSC_hg19_v1_chr6_+_133135707 AK096147 NM_001016 D28378 X53505	1514	+	TSC_hg19_v1_chr6_+_133135710 AK311826 BC095424 BC017321 BC071930	1526	+	AK295798 NM_004100 NM_172103 NM_172105 TSC_hg19_v1_chr6_+_133562494	428298	+	AK124442|C6orf192|116843|chromosome 6 open reading frame 192##BC069570|C6orf192|116843|chromosome 6 open reading frame 192##AK293853|C6orf192|116843|chromosome 6 open reading frame 192##NM_052831|C6orf192|116843|chromosome 6 open reading frame 192##AK289918|C6orf192|116843|chromosome 6 open reading frame 192##AK292125|VNN2|8875|vanin 2##NM_078488|VNN2|8875|vanin 2##BC064641|VNN2|8875|vanin 2##AB435062|VNN2|8875|vanin 2##AB435063|VNN2|8875|vanin 2##AB435064|VNN2|8875|vanin 2##AB435065|VNN2|8875|vanin 2##NM_001242350|VNN2|8875|vanin 2##HQ258282|VNN2|8875|vanin 2##HQ258449|VNN2|8875|vanin 2##AB026705|VNN2|8875|vanin 2##AJ132100|VNN2|8875|vanin 2##D89974|VNN2|8875|vanin 2##NM_004665|VNN2|8875|vanin 2##AK290908|VNN2|8875|vanin 2##AK298719|VNN2|8875|vanin 2##BC126145|VNN2|8875|vanin 2##BC126147|VNN2|8875|vanin 2##BC144064|VNN2|8875|vanin 2##AK096147|SNORA33|594839|small nucleolar RNA, H/ACA box 33##NM_001016|RPS12|6206|ribosomal protein S12##D28378|RPS12|6206|ribosomal protein S12##X53505|RPS12|6206|ribosomal protein S12##AK311826|RPS12|6206|ribosomal protein S12##BC095424|RPS12|6206|ribosomal protein S12##BC017321|RPS12|6206|ribosomal protein S12##BC071930|RPS12|6206|ribosomal protein S12##AK295798|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_004100|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_172103|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_172105|EYA4|2070|eyes absent homolog 4 (Drosophila)	0.992595	0.0	denovo_WM_7:14:0.458	denovo_WM_7:15:0.458
chr7	106183067	106183223	reg1005239.p1	5.568	+	BC072439 TSC_hg19_v1_chr7_-_105925430 BC106046 NM_005746	-257622	-	AB590725 CU687232 U02020 BC020691 TSC_hg19_v1_chr7_-_105925367 AK292851 AK304085	-257783	-	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	-430130	-	AK093350 AX748070 BC013906 TSC_hg19_v1_chr7_-_106301480 NM_175884	118358	-	TSC_hg19_v1_chr7_+_106505701 AK292684	322568	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	322629	+	BC072439|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC106046|NAMPT|10135|nicotinamide phosphoribosyltransferase##NM_005746|NAMPT|10135|nicotinamide phosphoribosyltransferase##U02020|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC020691|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK292851|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK304085|NAMPT|10135|nicotinamide phosphoribosyltransferase##EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1##AK093350|C7orf74|168455|chromosome 7 open reading frame 74##BC013906|C7orf74|168455|chromosome 7 open reading frame 74##NM_175884|C7orf74|168455|chromosome 7 open reading frame 74##AK292684|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide	0.0	0.339844	CTCF.p2:-44:0.340
chr12	26614815	26614956	reg1008008.p1	5.567	+	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-266300	+	NM_001135823 AK092925 TSC_hg19_v1_chr12_+_26348312	-266594	+	TSC_hg19_v1_chr12_-_26277832 AY665467 AK303677 AB044088 BC025968 NM_030762	-336964	-	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	371195	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	476024	-	TSC_hg19_v1_chr12_-_27091213 NM_018164	476345	-	AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_001135823|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK092925|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AY665467|BHLHE41|79365|basic helix-loop-helix family, member e41##AK303677|BHLHE41|79365|basic helix-loop-helix family, member e41##AB044088|BHLHE41|79365|basic helix-loop-helix family, member e41##BC025968|BHLHE41|79365|basic helix-loop-helix family, member e41##NM_030762|BHLHE41|79365|basic helix-loop-helix family, member e41##AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)	0.999653	0.0	denovo_WM_7:6:0.425	denovo_WM_7:7:0.425
chr2	120475050	120475191	reg1008170.p1	5.567	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	-38339	+	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	-38386	+	AK293665 NM_001029996 TSC_hg19_v1_chr2_+_120302024 BC036530 AK304416	-173078	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	42280	+	TSC_hg19_v1_chr2_+_120770604 NM_001184937 NM_001184939 NM_020909	295483	+	TSC_hg19_v1_chr2_+_120770652 AK023019 BC054508 AK290895 BC032822 NM_001184938	295613	+	AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##AK293665|PCDP1|200373|primary ciliary dyskinesia protein 1##NM_001029996|PCDP1|200373|primary ciliary dyskinesia protein 1##BC036530|PCDP1|200373|primary ciliary dyskinesia protein 1##AK304416|PCDP1|200373|primary ciliary dyskinesia protein 1##M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_001184937|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184939|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_020909|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK023019|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC054508|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK290895|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC032822|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184938|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5	0.994636	0.0	
chr22	50973542	50973705	reg1009480.p1	5.567	+	NM_001014440	-2616	-	BC127934 BC127935 TSC_hg19_v1_chr22_-_50970579	-3058	-	TSC_hg19_v1_chr22_-_50968479 NM_001113755 NM_001953	-5127	-	BC009980 NM_138433	12838	+	NM_001123225	27704	-	BC143071 BC150318 D87812 U62733 BC142954 NM_001145137	42801	-	NM_001014440|ODF3B|440836|outer dense fiber of sperm tails 3B##BC127934|ODF3B|440836|outer dense fiber of sperm tails 3B##BC127935|ODF3B|440836|outer dense fiber of sperm tails 3B##NM_001113755|TYMP|1890|thymidine phosphorylase##NM_001953|TYMP|1890|thymidine phosphorylase##BC009980|KLHDC7B|113730|kelch domain containing 7B##NM_138433|KLHDC7B|113730|kelch domain containing 7B##NM_001123225|SYCE3|644186|synaptonemal complex central element protein 3##BC143071|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##BC150318|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##D87812|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##U62733|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##BC142954|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##NM_001145137|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)	0.99911	0.0	denovo_WM_7:-40:0.310	denovo_WM_7:-41:0.310	denovo_WM_7:-42:0.310
chr8	104109069	104109173	reg1004122.p2	5.567	+	TSC_hg19_v1_chr8_+_104033310 AK308632 BC010960 X69151 AK000064	-75801	+	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	-75854	+	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	-232726	-	TSC_hg19_v1_chr8_+_104152984 NM_001024372 NM_024812 BC035038 AK022077 BC011517 AK093819 AF371319 AF371323 DQ893318 DQ896633	43879	+	NM_001164615 BX640609 AK313789	201553	+	NM_001164616 NM_003506 TSC_hg19_v1_chr8_+_104311103 AK299341 AK296824 BC060836 BC036106 AB012911 AK304092 AK316544	201970	+	AK308632|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BC010960|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##X69151|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK000064|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001024372|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_024812|BAALC|79870|brain and acute leukemia, cytoplasmic##BC035038|BAALC|79870|brain and acute leukemia, cytoplasmic##AK022077|BAALC|79870|brain and acute leukemia, cytoplasmic##BC011517|BAALC|79870|brain and acute leukemia, cytoplasmic##AK093819|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371319|BAALC|79870|brain and acute leukemia, cytoplasmic##AF371323|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ893318|BAALC|79870|brain and acute leukemia, cytoplasmic##DQ896633|BAALC|79870|brain and acute leukemia, cytoplasmic##NM_001164615|FZD6|8323|frizzled family receptor 6##BX640609|FZD6|8323|frizzled family receptor 6##AK313789|FZD6|8323|frizzled family receptor 6##NM_001164616|FZD6|8323|frizzled family receptor 6##NM_003506|FZD6|8323|frizzled family receptor 6##AK299341|FZD6|8323|frizzled family receptor 6##AK296824|FZD6|8323|frizzled family receptor 6##BC060836|FZD6|8323|frizzled family receptor 6##BC036106|FZD6|8323|frizzled family receptor 6##AB012911|FZD6|8323|frizzled family receptor 6##AK304092|FZD6|8323|frizzled family receptor 6##AK316544|FZD6|8323|frizzled family receptor 6	0.996924	0.0	denovo_WM_7:11:0.880
chr14	71813551	71813697	reg1007128.p1	5.566	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-439173	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-439491	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-537815	-	AF090989 AF090990 NM_015556	182417	+	AK294895 NM_001204423	585192	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	585529	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.998269	0.0	denovo_WM_7:57:0.827
chr17	71584417	71584519	reg1004232.p1	5.566	+	BC010451 TSC_hg19_v1_chr17_-_71308141 AK097835 AK027385 AK312536 BC002774 NM_012121	-276328	-	BC157870 NM_001129885	-326450	-	BC005005 TSC_hg19_v1_chr17_+_71229423	-355078	+	NM_001144952	55758	-	NM_000999 NM_001035258 AK097905 TSC_hg19_v1_chr17_+_72199816 AB055771 AK312119	615347	+	TSC_hg19_v1_chr17_+_72199849 BC000603	615385	+	BC010451|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK097835|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK027385|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK312536|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##BC002774|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##NM_012121|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##BC157870|CPSF4L|642843|cleavage and polyadenylation specific factor 4-like##NM_001129885|CPSF4L|642843|cleavage and polyadenylation specific factor 4-like##BC005005|C17orf80|55028|chromosome 17 open reading frame 80##NM_001144952|SDK2|54549|sidekick cell adhesion molecule 2##NM_000999|RPL38|6169|ribosomal protein L38##NM_001035258|RPL38|6169|ribosomal protein L38##AB055771|RPL38|6169|ribosomal protein L38##AK312119|RPL38|6169|ribosomal protein L38##BC000603|RPL38|6169|ribosomal protein L38	1.95616	0.0	
chr5	123997113	123997293	reg1008834.p2	5.566	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1149321	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1238059	-	NM_001136239 AK297992 AF272898 AF272899	-1572359	+	BC131507 AB033107 BC151226 NM_020747	83585	-	NM_001146319 AK316288 AK300154	1698611	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1761640	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.998185	0.0	denovo_WM_7:-18:0.532	denovo_WM_7:-19:0.206	denovo_WM_7:-21:0.206
chr5	126746646	126746765	reg1007693.p1	5.566	+	NM_032446 CR749437 AK307919 BC020198 AB058676 BC152478	-120171	+	AK126569 NM_001164478 NM_001164479	-337528	-	NM_178450	-380266	-	NM_130809 TSC_hg19_v1_chr5_+_126853331 AL831963 AL832056 AL832600 AJ427339 AJ441110 AJ496322 AJ515158 AJ515428 AJ515429 AK057437 BC017066	106646	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	112489	+	NM_001048252 AB219764	238018	+	NM_032446|MEGF10|84466|multiple EGF-like-domains 10##CR749437|MEGF10|84466|multiple EGF-like-domains 10##AK307919|MEGF10|84466|multiple EGF-like-domains 10##BC020198|MEGF10|84466|multiple EGF-like-domains 10##AB058676|MEGF10|84466|multiple EGF-like-domains 10##BC152478|MEGF10|84466|multiple EGF-like-domains 10##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_130809|PRRC1|133619|proline-rich coiled-coil 1##AL831963|PRRC1|133619|proline-rich coiled-coil 1##AL832056|PRRC1|133619|proline-rich coiled-coil 1##AL832600|PRRC1|133619|proline-rich coiled-coil 1##AJ427339|PRRC1|133619|proline-rich coiled-coil 1##AJ441110|PRRC1|133619|proline-rich coiled-coil 1##AJ496322|PRRC1|133619|proline-rich coiled-coil 1##AJ515158|PRRC1|133619|proline-rich coiled-coil 1##AJ515428|PRRC1|133619|proline-rich coiled-coil 1##AJ515429|PRRC1|133619|proline-rich coiled-coil 1##AK057437|PRRC1|133619|proline-rich coiled-coil 1##BC017066|PRRC1|133619|proline-rich coiled-coil 1##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3	0.326147	0.0	denovo_WM_7:20:0.260
chr9	6644051	6644199	reg1006882.p2	5.566	+	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-230720	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-230928	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	-230981	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	1502	-	AK310439 NM_001146696	76737	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	113542	+	AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C	1.975096	0.0	denovo_WM_7:-64:0.978
chr15	101462630	101462767	reg1004263.p2	5.564	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-3186	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-3224	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-42627	+	AB071402 TSC_hg19_v1_chr15_-_101791795	329038	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	329437	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	354965	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.987241	0.0	denovo_WM_7:-46:0.987
chr16	10008268	10008448	reg1002459.p2	5.564	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-822755	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-822818	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-951063	-	BC143273 U09002 NM_001134408	267475	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	267830	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	268319	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.0	0.0	
chr17	8883476	8883656	reg1006089.p2	5.564	+	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	-14585	-	AY725853 AF128881 NM_014308	-67750	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	-112582	-	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	41401	+	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	595565	-	TSC_hg19_v1_chr17_-_9479156 BC009713 AF062077 AF115323 NM_004853	595640	-	AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8##BC009713|STX8|9482|syntaxin 8##AF062077|STX8|9482|syntaxin 8##AF115323|STX8|9482|syntaxin 8##NM_004853|STX8|9482|syntaxin 8	0.945456	0.0	denovo_WM_7:41:0.579
chr5	95170252	95170346	reg1005527.p1	5.564	+	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	-11779	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	-11899	-	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-102763	+	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	127199	-	TSC_hg19_v1_chr5_-_95297609 BC028412 NM_012081	127386	-	AK308575 NM_001177876	578389	-	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2##BC028412|ELL2|22936|elongation factor, RNA polymerase II, 2##NM_012081|ELL2|22936|elongation factor, RNA polymerase II, 2##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1	0.983638	0.0	
chrX	62399573	62399738	reg1006970.p1	5.564	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-4462696	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-4781195	+	NM_007157	-4781387	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	171544	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	248612	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	381212	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	1.020493	0.0	
chr12	96709612	96709729	reg1008009.p2	5.563	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-121403	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-121544	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-280255	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	84313	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	84647	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	591361	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.327987	0.0	denovo_WM_7:43:0.328
chr10	35438738	35438896	reg1008165.p2	5.562	+	NM_183011 NM_183012 AB590551	-12081	+	NM_181571 NM_183060 BC041810	-22432	+	D14825 TSC_hg19_v1_chr10_+_35416154	-22682	+	AF417234 NM_182771 NM_182772	17637	+	NM_182769 NM_182770 AF417233 AY292864 BC090051 AK301906	25714	+	D14826 NM_182717 NM_182718 NM_182719 NM_182720 AK290612 AF069065 U44836	45268	+	NM_183011|CREM|1390|cAMP responsive element modulator##NM_183012|CREM|1390|cAMP responsive element modulator##NM_181571|CREM|1390|cAMP responsive element modulator##NM_183060|CREM|1390|cAMP responsive element modulator##BC041810|CREM|1390|cAMP responsive element modulator##D14825|CREM|1390|cAMP responsive element modulator##AF417234|CREM|1390|cAMP responsive element modulator##NM_182771|CREM|1390|cAMP responsive element modulator##NM_182772|CREM|1390|cAMP responsive element modulator##NM_182769|CREM|1390|cAMP responsive element modulator##NM_182770|CREM|1390|cAMP responsive element modulator##AF417233|CREM|1390|cAMP responsive element modulator##AY292864|CREM|1390|cAMP responsive element modulator##BC090051|CREM|1390|cAMP responsive element modulator##AK301906|CREM|1390|cAMP responsive element modulator##D14826|CREM|1390|cAMP responsive element modulator##NM_182717|CREM|1390|cAMP responsive element modulator##NM_182718|CREM|1390|cAMP responsive element modulator##NM_182719|CREM|1390|cAMP responsive element modulator##NM_182720|CREM|1390|cAMP responsive element modulator##AK290612|CREM|1390|cAMP responsive element modulator##AF069065|CREM|1390|cAMP responsive element modulator##U44836|CREM|1390|cAMP responsive element modulator	0.0	0.0	
chr14	64334024	64334144	reg1007415.p1	5.562	+	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	-14389	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-139335	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-225522	-	NM_182913 AY061758 AK297874	346793	+	NM_182910	348587	+	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	415579	-	NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)	0.999751	0.0	denovo_WM_7:23:0.295	denovo_WM_7:24:0.295	denovo_WM_7:25:0.295
chr9	109397035	109397162	reg1007651.p1	5.562	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-940180	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-940245	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-972341	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	228266	+	TSC_hg19_v1_chr9_+_109686439 CR749850	289371	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	648434	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.0	0.0	
chr9	69652274	69652454	reg1006444.p1	5.562	+	AL136793 NM_001098805	-270384	+	AF265442 BC069006 AK293173 NM_001085457	-389810	-	NM_001085476	-450161	-	NM_001126334	526450	-	NM_001099279 NM_199244	777366	-	CU688346 TSC_hg19_v1_chr9_-_70490092	837717	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.0	0.717282	CTCF.p2:-63:0.717
chr15	62774921	62775055	reg1009515.p1	5.561	+	TSC_hg19_v1_chr15_+_62682748 AB621808	-92270	+	NM_001007595	-317507	-	NM_207322 AF504646	-415800	+	AF402000 NM_015059	164521	+	TSC_hg19_v1_chr15_+_63050761 BX648144 BX648146	275786	+	TSC_hg19_v1_chr15_+_63334949 NM_000366 NM_001018004 NM_001018005 NM_001018006 NM_001018007 NM_001018020 AK092051 AX747334 BC007433 AK057989 AK299387 AK129882 AK131384 AK309170 AL050179 M19713 DQ893259 DQ896588 CU675655 AY640414 AY640415	559914	+	AB621808|TLN2|83660|talin 2##NM_001007595|C2CD4B|388125|C2 calcium-dependent domain containing 4B##NM_207322|C2CD4A|145741|C2 calcium-dependent domain containing 4A##AF504646|C2CD4A|145741|C2 calcium-dependent domain containing 4A##AF402000|TLN2|83660|talin 2##NM_015059|TLN2|83660|talin 2##BX648144|TLN2|83660|talin 2##BX648146|TLN2|83660|talin 2##NM_000366|TPM1|7168|tropomyosin 1 (alpha)##NM_001018004|TPM1|7168|tropomyosin 1 (alpha)##NM_001018005|TPM1|7168|tropomyosin 1 (alpha)##NM_001018006|TPM1|7168|tropomyosin 1 (alpha)##NM_001018007|TPM1|7168|tropomyosin 1 (alpha)##NM_001018020|TPM1|7168|tropomyosin 1 (alpha)##AK092051|TPM1|7168|tropomyosin 1 (alpha)##BC007433|TPM1|7168|tropomyosin 1 (alpha)##AK057989|TPM1|7168|tropomyosin 1 (alpha)##AK299387|TPM1|7168|tropomyosin 1 (alpha)##AK129882|TPM1|7168|tropomyosin 1 (alpha)##AK131384|TPM1|7168|tropomyosin 1 (alpha)##AK309170|TPM1|7168|tropomyosin 1 (alpha)##AL050179|TPM1|7168|tropomyosin 1 (alpha)##M19713|TPM1|7168|tropomyosin 1 (alpha)##DQ893259|TPM1|7168|tropomyosin 1 (alpha)##DQ896588|TPM1|7168|tropomyosin 1 (alpha)##AY640414|TPM1|7168|tropomyosin 1 (alpha)##AY640415|TPM1|7168|tropomyosin 1 (alpha)	0.0	0.0	
chr16	12073130	12073310	reg1007813.p2	5.561	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-2647	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-14136	+	NM_001130007	-62702	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	824431	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	824499	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	922248	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	0.99754	0.0	
chr21	34817674	34817770	reg1007877.p2	5.561	+	TSC_hg19_v1_chr21_-_34787167 DQ655977	-30514	-	TSC_hg19_v1_chr21_+_34775780 AB463788 DQ892320 DQ895522	-41909	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	-41974	+	TSC_hg19_v1_chr21_-_34852209 AK310701	34465	-	TSC_hg19_v1_chr21_-_34852239 AY358634 BC000569 AK309977 BX537378 AF045606	34527	-	TSC_hg19_v1_chr21_-_34852282 NM_006134 DQ656043	34577	-	DQ892320|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##DQ895522|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK310701|TMEM50B|757|transmembrane protein 50B##AY358634|TMEM50B|757|transmembrane protein 50B##BC000569|TMEM50B|757|transmembrane protein 50B##AK309977|TMEM50B|757|transmembrane protein 50B##AF045606|TMEM50B|757|transmembrane protein 50B##NM_006134|TMEM50B|757|transmembrane protein 50B##DQ656043|TMEM50B|757|transmembrane protein 50B	0.0	0.742955	CTCF.p2:35:0.743
chr5	130594020	130594158	reg1003137.p3	5.561	+	TSC_hg19_v1_chr5_+_130506676 BC037930 BC047079	-87418	+	AK000803 NM_181705 TSC_hg19_v1_chr5_+_130506648	-87446	+	TSC_hg19_v1_chr5_-_130501019 NM_005340	-93046	-	NM_001038702 NM_020240 TSC_hg19_v1_chr5_+_130599737	5632	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	5667	+	AK312406 TSC_hg19_v1_chr5_+_130599768	5679	+	BC037930|LYRM7|90624|Lyrm7 homolog (mouse)##BC047079|LYRM7|90624|Lyrm7 homolog (mouse)##AK000803|LYRM7|90624|Lyrm7 homolog (mouse)##NM_181705|LYRM7|90624|Lyrm7 homolog (mouse)##NM_005340|HINT1|3094|histidine triad nucleotide binding protein 1##NM_001038702|CDC42SE2|56990|CDC42 small effector 2##NM_020240|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2	0.98147	0.0	denovo_WM_7:10:0.426	denovo_WM_7:11:0.483
chr7	74513054	74513196	reg1008504.p1	5.561	+	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-4751	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-23433	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-23487	-	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	354395	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	475445	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	511840	+	NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73	1.011479	0.0	
chr1	10010498	10010659	reg1000986.p1	5.560	+	TSC_hg19_v1_chr1_+_10003532 AK315640	-7035	+	NM_022787 BC014943 TSC_hg19_v1_chr1_+_10003497 AK026065 AK222920	-7082	+	TSC_hg19_v1_chr1_-_10003358 AB060688 BC007240 AK304348 AK312550	-7205	-	BC063013 NM_052960 BC033883 AF399927 AK312027 AY145438 CU687628	46706	+	TSC_hg19_v1_chr1_+_10093015 AB028839 NM_001105562 NM_006048	82437	+	AB014584 TSC_hg19_v1_chr1_+_10093218	82635	+	AK315640|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##NM_022787|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##BC014943|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK026065|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK222920|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AB060688|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC007240|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK304348|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK312550|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC063013|RBP7|116362|retinol binding protein 7, cellular##NM_052960|RBP7|116362|retinol binding protein 7, cellular##BC033883|RBP7|116362|retinol binding protein 7, cellular##AF399927|RBP7|116362|retinol binding protein 7, cellular##AK312027|RBP7|116362|retinol binding protein 7, cellular##AY145438|RBP7|116362|retinol binding protein 7, cellular##AB028839|UBE4B|10277|ubiquitination factor E4B##NM_001105562|UBE4B|10277|ubiquitination factor E4B##NM_006048|UBE4B|10277|ubiquitination factor E4B##AB014584|UBE4B|10277|ubiquitination factor E4B	0.0	0.578428	CTCF.p2:-24:0.578
chr10	121460003	121460174	reg1008055.p2	5.559	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-48952	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-49013	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-49035	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	25450	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	25526	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	25617	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.0	0.0	
chr16	5306920	5307073	reg1009039.p2	5.559	+	CU679605 BC010084 TSC_hg19_v1_chr16_-_5147756 AY037162 NM_201400 NM_201598	-159228	-	NM_019109 TSC_hg19_v1_chr16_+_5121825 AK075373 BC031095 AB019038 BC004402 AK311475 CU678708 DQ895010 EU176309	-185166	+	TSC_hg19_v1_chr16_-_5116030 BC033681 AY358483 NM_001098514 NM_152459	-190909	-	AB208826 AF107203 AF448859 NM_001142333 NM_018723 AL713700 TSC_hg19_v1_chr16_+_6069353	762229	+	TSC_hg19_v1_chr16_+_6533765 BC033885	1226779	+	AK001027 NM_001142334	1516813	+	BC010084|FAM86A|196483|family with sequence similarity 86, member A##AY037162|FAM86A|196483|family with sequence similarity 86, member A##NM_201400|FAM86A|196483|family with sequence similarity 86, member A##NM_201598|FAM86A|196483|family with sequence similarity 86, member A##NM_019109|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##AK075373|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##BC031095|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##AB019038|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##BC004402|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##AK311475|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##DQ895010|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##EU176309|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##BC033681|C16orf89|146556|chromosome 16 open reading frame 89##AY358483|C16orf89|146556|chromosome 16 open reading frame 89##NM_001098514|C16orf89|146556|chromosome 16 open reading frame 89##NM_152459|C16orf89|146556|chromosome 16 open reading frame 89##AB208826|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF107203|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF448859|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142333|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_018723|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AL713700|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1	0.993507	0.0	denovo_WM_7:-49:0.684	denovo_WM_7:-51:0.218
chr9	86911291	86911458	reg1006984.p2	5.559	+	NM_024945 TSC_hg19_v1_chr9_+_86595689 BC039999 BC020606 AK022950 BC044571 BC053549 BC032494	-315665	+	TSC_hg19_v1_chr9_-_86595531 BC014980 AK291336 X72727 NM_002140 NM_031262	-315835	-	TSC_hg19_v1_chr9_-_86595168 NM_031263	-316199	-	BC093821 BC093823 AK310861 AK304406 AK314039 AK292849 NM_001199633	44260	-	AF305210 NM_022127	72038	-	TSC_hg19_v1_chr9_+_87283453 BC075804 NM_001018064 NM_006180 AB209118	372087	+	NM_024945|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC039999|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC020606|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##AK022950|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC044571|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC053549|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC032494|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC014980|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK291336|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##X72727|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_002140|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_031262|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_031263|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##BC093821|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##BC093823|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK310861|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK304406|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK314039|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK292849|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##NM_001199633|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AF305210|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##NM_022127|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##BC075804|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##NM_001018064|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##NM_006180|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB209118|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2	0.0	0.0	
chr1	224401772	224401905	reg1008701.p2	5.558	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	-30851	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	-30916	+	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	-100028	+	TSC_hg19_v1_chr1_-_224517875 BC012105 AK298244 AK297396 AK298826 AK293923 AK297070 BC005897 U78772 U68140 NM_001243146 NM_001243147 NM_002533 NM_206840	116014	-	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	142731	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	142754	+	AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC012105|NVL|4931|nuclear VCP-like##AK298244|NVL|4931|nuclear VCP-like##AK297396|NVL|4931|nuclear VCP-like##AK298826|NVL|4931|nuclear VCP-like##AK293923|NVL|4931|nuclear VCP-like##AK297070|NVL|4931|nuclear VCP-like##BC005897|NVL|4931|nuclear VCP-like##U78772|NVL|4931|nuclear VCP-like##U68140|NVL|4931|nuclear VCP-like##NM_001243146|NVL|4931|nuclear VCP-like##NM_001243147|NVL|4931|nuclear VCP-like##NM_002533|NVL|4931|nuclear VCP-like##NM_206840|NVL|4931|nuclear VCP-like##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)	0.0	0.0	
chr2	127844587	127844767	reg1010027.p2	5.558	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	-430885	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	-430970	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-3061813	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	20064	-	BC039307 NM_001001665	118665	-	AK131190 TSC_hg19_v1_chr2_-_127977781	133040	-	BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1##BC039307|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##NM_001001665|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##AK131190|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1	0.0	0.120887	
chr5	14676298	14676431	reg1007491.p2	5.558	+	TSC_hg19_v1_chr5_+_14664826 BC015392	-11523	+	TSC_hg19_v1_chr5_+_14664772 NM_138348	-11588	+	AK123396 TSC_hg19_v1_chr5_-_14664742	-11637	-	DQ892588 DQ895806 AK222631 AK315012 BC014526 AF274753 AY358503 TSC_hg19_v1_chr5_-_14871888 AL833238 AB046801 BC009835 NM_054027	195491	-	TSC_hg19_v1_chr5_+_15500291 AB020647 NM_012304	823935	+	BC136424 TSC_hg19_v1_chr5_+_15500549	824180	+	BC015392|FAM105B|90268|family with sequence similarity 105, member B##NM_138348|FAM105B|90268|family with sequence similarity 105, member B##AK123396|LOC728178|728178|uncharacterized LOC728178##DQ892588|ANKH|56172|ankylosis, progressive homolog (mouse)##DQ895806|ANKH|56172|ankylosis, progressive homolog (mouse)##AK222631|ANKH|56172|ankylosis, progressive homolog (mouse)##AK315012|ANKH|56172|ankylosis, progressive homolog (mouse)##BC014526|ANKH|56172|ankylosis, progressive homolog (mouse)##AF274753|ANKH|56172|ankylosis, progressive homolog (mouse)##AY358503|ANKH|56172|ankylosis, progressive homolog (mouse)##AB046801|ANKH|56172|ankylosis, progressive homolog (mouse)##BC009835|ANKH|56172|ankylosis, progressive homolog (mouse)##NM_054027|ANKH|56172|ankylosis, progressive homolog (mouse)##AB020647|FBXL7|23194|F-box and leucine-rich repeat protein 7##NM_012304|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC136424|FBXL7|23194|F-box and leucine-rich repeat protein 7	0.860697	0.0	denovo_WM_7:2:0.360	denovo_WM_7:3:0.446
chrX	150048371	150048501	reg1008068.p2	5.558	+	TSC_hg19_v1_chrX_+_149861868 BC032947 NM_003828 AK226109 AF057354 AJ224979	-186515	+	AL832715 AK297021 BC030779 TSC_hg19_v1_chrX_+_149737092	-311332	+	TSC_hg19_v1_chrX_+_149737070 NM_000252 AK291710 U46024 AK297057 AK304036	-311390	+	AM393605 AM393786 DQ891322 DQ894506 AK290200 TSC_hg19_v1_chrX_-_150067096 AK293244 AY078165 AY078166 AY078167 AK125020 AK291375 BC025729 AK295217	18657	-	TSC_hg19_v1_chrX_-_150067149 BC030536 AY358837 AL136580 NM_001184808 NM_001242614 NM_031462 NM_134445 NM_134446	18771	-	TSC_hg19_v1_chrX_+_150151807 BX537505 NM_005342 Y10043 BC070482	103371	+	BC032947|MTMR1|8776|myotubularin related protein 1##NM_003828|MTMR1|8776|myotubularin related protein 1##AK226109|MTMR1|8776|myotubularin related protein 1##AF057354|MTMR1|8776|myotubularin related protein 1##AJ224979|MTMR1|8776|myotubularin related protein 1##AL832715|MTM1|4534|myotubularin 1##AK297021|MTM1|4534|myotubularin 1##BC030779|MTM1|4534|myotubularin 1##NM_000252|MTM1|4534|myotubularin 1##AK291710|MTM1|4534|myotubularin 1##U46024|MTM1|4534|myotubularin 1##AK297057|MTM1|4534|myotubularin 1##AK304036|MTM1|4534|myotubularin 1##AM393605|CD99L2|83692|CD99 molecule-like 2##AM393786|CD99L2|83692|CD99 molecule-like 2##DQ891322|CD99L2|83692|CD99 molecule-like 2##DQ894506|CD99L2|83692|CD99 molecule-like 2##AK290200|CD99L2|83692|CD99 molecule-like 2##AK293244|CD99L2|83692|CD99 molecule-like 2##AY078165|CD99L2|83692|CD99 molecule-like 2##AY078166|CD99L2|83692|CD99 molecule-like 2##AY078167|CD99L2|83692|CD99 molecule-like 2##AK125020|CD99L2|83692|CD99 molecule-like 2##AK291375|CD99L2|83692|CD99 molecule-like 2##BC025729|CD99L2|83692|CD99 molecule-like 2##AK295217|CD99L2|83692|CD99 molecule-like 2##BC030536|CD99L2|83692|CD99 molecule-like 2##AY358837|CD99L2|83692|CD99 molecule-like 2##AL136580|CD99L2|83692|CD99 molecule-like 2##NM_001184808|CD99L2|83692|CD99 molecule-like 2##NM_001242614|CD99L2|83692|CD99 molecule-like 2##NM_031462|CD99L2|83692|CD99 molecule-like 2##NM_134445|CD99L2|83692|CD99 molecule-like 2##NM_134446|CD99L2|83692|CD99 molecule-like 2##BX537505|HMGB3|3149|high mobility group box 3##NM_005342|HMGB3|3149|high mobility group box 3##Y10043|HMGB3|3149|high mobility group box 3##BC070482|HMGB3|3149|high mobility group box 3	0.995832	0.0	
chrX	96818737	96818876	reg1008283.p1	5.558	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	-679836	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	-878852	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	-879055	+	EF676096 NM_001105243 NM_001184880 NM_020766 TSC_hg19_v1_chrX_-_99665272	2846467	-	NM_022144 AF191770 BC034030 AF291656 AF234259 AY358706 AB055421 AB590911 CU689814	3021095	+	BT006977 CR457115 AB527646 DQ890668 DQ893849 TSC_hg19_v1_chrX_-_99891804 AF053453 AK299176 AF133426 AK309581 AY358825 AB097016 AF043906 U84895 BC012389 NM_003270 AK075072 AB209876 AK315773 AK300852	3072962	-	NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa##BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##EF676096|PCDH19|57526|protocadherin 19##NM_001105243|PCDH19|57526|protocadherin 19##NM_001184880|PCDH19|57526|protocadherin 19##NM_020766|PCDH19|57526|protocadherin 19##NM_022144|TNMD|64102|tenomodulin##AF191770|TNMD|64102|tenomodulin##BC034030|TNMD|64102|tenomodulin##AF291656|TNMD|64102|tenomodulin##AF234259|TNMD|64102|tenomodulin##AY358706|TNMD|64102|tenomodulin##AB055421|TNMD|64102|tenomodulin##BT006977|TSPAN6|7105|tetraspanin 6##CR457115|TSPAN6|7105|tetraspanin 6##DQ890668|TSPAN6|7105|tetraspanin 6##DQ893849|TSPAN6|7105|tetraspanin 6##AF053453|TSPAN6|7105|tetraspanin 6##AK299176|TSPAN6|7105|tetraspanin 6##AF133426|TSPAN6|7105|tetraspanin 6##AK309581|TSPAN6|7105|tetraspanin 6##AY358825|TSPAN6|7105|tetraspanin 6##AB097016|TSPAN6|7105|tetraspanin 6##AF043906|TSPAN6|7105|tetraspanin 6##U84895|TSPAN6|7105|tetraspanin 6##BC012389|TSPAN6|7105|tetraspanin 6##NM_003270|TSPAN6|7105|tetraspanin 6##AK075072|TSPAN6|7105|tetraspanin 6##AB209876|TSPAN6|7105|tetraspanin 6##AK315773|TSPAN6|7105|tetraspanin 6##AK300852|TSPAN6|7105|tetraspanin 6	0.860168	0.0	denovo_WM_7:30:0.647
chr11	59304890	59305070	reg1005699.p1	5.557	+	NM_001004711	-22595	+	NM_001004706	-33932	+	BC136893 BC136894 NM_001004705	-60107	+	TSC_hg19_v1_chr11_-_59383172 BC051350 BC063121	78189	-	TSC_hg19_v1_chr11_-_59383232 BC011581	78230	-	AF185696 M86917 NM_002556	78636	-	NM_001004711|OR4D9|390199|olfactory receptor, family 4, subfamily D, member 9##NM_001004706|OR4D11|219986|olfactory receptor, family 4, subfamily D, member 11##BC136893|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC136894|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##NM_001004705|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC051350|OSBP|5007|oxysterol binding protein##BC063121|OSBP|5007|oxysterol binding protein##BC011581|OSBP|5007|oxysterol binding protein##AF185696|OSBP|5007|oxysterol binding protein##M86917|OSBP|5007|oxysterol binding protein##NM_002556|OSBP|5007|oxysterol binding protein	0.653246	0.0	denovo_WM_7:-34:0.286
chr16	48434180	48434276	reg1008789.p1	5.557	+	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-14976	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-34437	-	BC042550 TSC_hg19_v1_chr16_-_48399765	-34468	-	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	209888	-	AB527638 TSC_hg19_v1_chr16_-_49315397	881165	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	881272	-	BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor	0.069299	0.0	
chr19	40042246	40042382	reg1006534.p1	5.557	+	TSC_hg19_v1_chr19_-_40030800 AY251272 BC030137 AK128468 NM_153232	-11494	-	TSC_hg19_v1_chr19_-_40023460 BC040157 BC051333 AK096263 NM_152361 BC009725	-18827	-	AY324825 NM_182704 BC117331	-36545	+	BC066304 AY055826 BC069312 NM_013268 FJ613336 FJ613337 FJ613338 AF117383 CU686743	50871	+	FJ613352 NM_001190441	104231	+	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	152729	+	AY251272|EID2|163126|EP300 interacting inhibitor of differentiation 2##BC030137|EID2|163126|EP300 interacting inhibitor of differentiation 2##AK128468|EID2|163126|EP300 interacting inhibitor of differentiation 2##NM_153232|EID2|163126|EP300 interacting inhibitor of differentiation 2##BC040157|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##BC051333|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##AK096263|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##NM_152361|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##BC009725|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##AY324825|SELV|348303|selenoprotein V##NM_182704|SELV|348303|selenoprotein V##BC117331|SELV|348303|selenoprotein V##BC066304|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AY055826|LGALS13|29124|lectin, galactoside-binding, soluble, 13##BC069312|LGALS13|29124|lectin, galactoside-binding, soluble, 13##NM_013268|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613336|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613337|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613338|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AF117383|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613352|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001190441|LGALS16|148003|lectin, galactoside-binding, soluble, 16##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14	1.202563	0.993123	denovo_WM_7:30:0.568	CTCF.p2:-55:0.993
chr4	108993668	108993831	reg1008117.p2	5.557	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-82676	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-82737	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-82813	+	AK303272 NM_001166119	94165	-	TSC_hg19_v1_chr4_+_109088684 BC020624	94935	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	96050	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	0.145706	0.0	
chr8	23716948	23717066	reg1007834.p1	5.557	+	BC029044 AK297734 AK312589 NM_003155 U25997 TSC_hg19_v1_chr8_-_23712320	-4696	-	AB464642 NM_001136271	-152897	-	AB464643 AF249669 AF249670 AF249671 AF249672 EU446642 U91540 U80669 BC074863 BC074864 BC111569 BC111574 AF247704 NM_006167 TSC_hg19_v1_chr8_-_23540449	-176576	-	NM_014265 NM_021777 AK225921 AK293382 AK303437 AJ242015 AF137334 AF137335 BC136478 BC144140	434600	+	NM_001145271 NM_001145272 NM_014479 AK316320 BC069582 Y13323 AK301007 BC074877 BC074878 CU686914 AK300959 AK311528 AK316322	524900	+	BC058037 AK292492 NM_003817 AF215824 CU691292 AB527100	581524	+	BC029044|STC1|6781|stanniocalcin 1##AK297734|STC1|6781|stanniocalcin 1##AK312589|STC1|6781|stanniocalcin 1##NM_003155|STC1|6781|stanniocalcin 1##U25997|STC1|6781|stanniocalcin 1##AB464642|NKX2-6|137814|NK2 homeobox 6##NM_001136271|NKX2-6|137814|NK2 homeobox 6##AF249669|NKX3-1|4824|NK3 homeobox 1##AF249670|NKX3-1|4824|NK3 homeobox 1##AF249671|NKX3-1|4824|NK3 homeobox 1##AF249672|NKX3-1|4824|NK3 homeobox 1##EU446642|NKX3-1|4824|NK3 homeobox 1##U91540|NKX3-1|4824|NK3 homeobox 1##U80669|NKX3-1|4824|NK3 homeobox 1##BC074863|NKX3-1|4824|NK3 homeobox 1##BC074864|NKX3-1|4824|NK3 homeobox 1##AF247704|NKX3-1|4824|NK3 homeobox 1##NM_006167|NKX3-1|4824|NK3 homeobox 1##NM_014265|ADAM28|10863|ADAM metallopeptidase domain 28##NM_021777|ADAM28|10863|ADAM metallopeptidase domain 28##AK225921|ADAM28|10863|ADAM metallopeptidase domain 28##AK293382|ADAM28|10863|ADAM metallopeptidase domain 28##AK303437|ADAM28|10863|ADAM metallopeptidase domain 28##AJ242015|ADAM28|10863|ADAM metallopeptidase domain 28##AF137334|ADAM28|10863|ADAM metallopeptidase domain 28##AF137335|ADAM28|10863|ADAM metallopeptidase domain 28##BC136478|ADAM28|10863|ADAM metallopeptidase domain 28##BC144140|ADAM28|10863|ADAM metallopeptidase domain 28##NM_001145271|ADAMDEC1|27299|ADAM-like, decysin 1##NM_001145272|ADAMDEC1|27299|ADAM-like, decysin 1##NM_014479|ADAMDEC1|27299|ADAM-like, decysin 1##AK316320|ADAMDEC1|27299|ADAM-like, decysin 1##BC069582|ADAMDEC1|27299|ADAM-like, decysin 1##Y13323|ADAMDEC1|27299|ADAM-like, decysin 1##AK301007|ADAMDEC1|27299|ADAM-like, decysin 1##BC074877|ADAMDEC1|27299|ADAM-like, decysin 1##BC074878|ADAMDEC1|27299|ADAM-like, decysin 1##AK300959|ADAMDEC1|27299|ADAM-like, decysin 1##AK311528|ADAMDEC1|27299|ADAM-like, decysin 1##AK316322|ADAMDEC1|27299|ADAM-like, decysin 1##BC058037|ADAM7|8756|ADAM metallopeptidase domain 7##AK292492|ADAM7|8756|ADAM metallopeptidase domain 7##NM_003817|ADAM7|8756|ADAM metallopeptidase domain 7##AF215824|ADAM7|8756|ADAM metallopeptidase domain 7	0.998064	0.037012	denovo_WM_7:43:0.832
chrX	135938862	135939001	reg1008921.p2	5.557	+	BC039856 NM_004840	-75429	-	TSC_hg19_v1_chrX_-_135863105 BX537390	-75822	-	D25304 TSC_hg19_v1_chrX_-_135863046 AK291742	-75878	-	TSC_hg19_v1_chrX_-_135962854 BC073747	23927	-	TSC_hg19_v1_chrX_-_135962882 BC006550 BC007435 BX647131 AK091520 AK096015 AK304573 AK304868 AK309911	23963	-	TSC_hg19_v1_chrX_-_135962939 NM_001164803 NM_002139	24004	-	BC039856|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##NM_004840|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##BX537390|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##D25304|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##AK291742|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##BC006550|RBMX|27316|RNA binding motif protein, X-linked##BC007435|RBMX|27316|RNA binding motif protein, X-linked##BX647131|RBMX|27316|RNA binding motif protein, X-linked##AK091520|RBMX|27316|RNA binding motif protein, X-linked##AK096015|RBMX|27316|RNA binding motif protein, X-linked##AK304573|RBMX|27316|RNA binding motif protein, X-linked##AK304868|RBMX|27316|RNA binding motif protein, X-linked##AK309911|RBMX|27316|RNA binding motif protein, X-linked##NM_001164803|RBMX|27316|RNA binding motif protein, X-linked##NM_002139|RBMX|27316|RNA binding motif protein, X-linked	0.972842	0.0	denovo_WM_7:26:0.658	denovo_WM_7:27:0.259
chr13	53302812	53302992	reg1005956.p1	5.556	+	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	-75960	+	TSC_hg19_v1_chr13_+_53216565 BC108266	-86337	+	TSC_hg19_v1_chr13_+_53191659 NM_001011724 NM_001011725 BC007108 AK123159 BC082242	-111265	+	AB006000 CR541910 TSC_hg19_v1_chr13_-_53313891	10962	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	11060	-	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	119873	-	NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC108266|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011724|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011725|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AK123159|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##BC082242|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AB006000|LECT1|11061|leukocyte cell derived chemotaxin 1##CR541910|LECT1|11061|leukocyte cell derived chemotaxin 1##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8	0.0	0.0	
chr13	79976488	79976617	reg1007711.p2	5.556	+	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	-743259	-	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	-798829	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	-806270	+	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	3402	-	BC030806 TSC_hg19_v1_chr13_-_79980382	3831	-	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	3899	+	AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##BC030806|RBM26|64062|RNA binding motif protein 26##AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)	0.999661	0.0	denovo_WM_7:26:0.425	denovo_WM_7:27:0.425
chr22	39099257	39099323	reg1010335.p1	5.556	+	CR456923 CU677177 CU013023 CU013311 CR456473 AK291827 BC015026 D31884 TSC_hg19_v1_chr22_-_39096285 NM_014876	-3066	-	AK312076 TSC_hg19_v1_chr22_+_39077979 CU013025 CU013313 DQ893045 DQ896289	-21309	+	TSC_hg19_v1_chr22_+_39077977 BC009363 CR456475	-21314	+	NM_004286 TSC_hg19_v1_chr22_+_39101925	2575	+	TSC_hg19_v1_chr22_+_39101984 EU831484 EU831571 BC014075 AB385030 CR456501 CU013098 CU013386 U87964	2737	+	AK304188 TSC_hg19_v1_chr22_-_39150957 AK295787	51693	-	CR456923|JOSD1|9929|Josephin domain containing 1##CU013023|JOSD1|9929|Josephin domain containing 1##CU013311|JOSD1|9929|Josephin domain containing 1##CR456473|JOSD1|9929|Josephin domain containing 1##AK291827|JOSD1|9929|Josephin domain containing 1##BC015026|JOSD1|9929|Josephin domain containing 1##D31884|JOSD1|9929|Josephin domain containing 1##NM_014876|JOSD1|9929|Josephin domain containing 1##AK312076|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013025|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013313|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ893045|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ896289|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##BC009363|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CR456475|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##NM_004286|GTPBP1|9567|GTP binding protein 1##EU831484|GTPBP1|9567|GTP binding protein 1##EU831571|GTPBP1|9567|GTP binding protein 1##BC014075|GTPBP1|9567|GTP binding protein 1##CR456501|GTPBP1|9567|GTP binding protein 1##CU013098|GTPBP1|9567|GTP binding protein 1##CU013386|GTPBP1|9567|GTP binding protein 1##U87964|GTPBP1|9567|GTP binding protein 1##AK304188|SUN2|25777|Sad1 and UNC84 domain containing 2##AK295787|SUN2|25777|Sad1 and UNC84 domain containing 2	0.0	0.0	
chr7	66766142	66766299	reg1009604.p2	5.556	+	TSC_hg19_v1_chr7_+_66461858 BC042156 NM_018264 AK001762 BC015591 BC051888	-304362	+	CU688080 TSC_hg19_v1_chr7_-_66460574 BC065700 AF151855 AK001779 AY169963 NM_016038 AK289609	-305720	-	TSC_hg19_v1_chr7_+_66386238 BC010519	-379949	+	TSC_hg19_v1_chr7_-_66767458 BC029419 D38438 D38500 BC029368 BC038841 BC056507	1208	-	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	1388	+	TSC_hg19_v1_chr7_+_66767642 AK307290	1428	+	BC042156|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##NM_018264|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##AK001762|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC015591|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC051888|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC065700|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AF151855|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK001779|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AY169963|SBDS|51119|Shwachman-Bodian-Diamond syndrome##NM_016038|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK289609|SBDS|51119|Shwachman-Bodian-Diamond syndrome##BC010519|C7orf42|55069|chromosome 7 open reading frame 42##BC029419|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38438|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38500|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC029368|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC038841|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##AK307290|STAG3L4|64940|stromal antigen 3-like 4	0.991725	0.0	denovo_WM_7:25:0.331	denovo_WM_7:26:0.331	denovo_WM_7:27:0.331
chr11	111588028	111588153	reg1005808.p1	5.555	+	TSC_hg19_v1_chr11_+_111473176 NM_015191 AK291233 AL136764 AB018324 AB096248 AK000396 BC113459 BC117183 AB084424	-114857	+	TSC_hg19_v1_chr11_-_111412453 AK096925	-175642	-	AY358554 TSC_hg19_v1_chr11_+_111411485 AK055654 AK296231 BC025407 AK298165	-176635	+	M65254 TSC_hg19_v1_chr11_-_111637059	48940	-	AB384965 DQ890606 DQ894107 EU176538 AK292275 AK293388 AK294716 TSC_hg19_v1_chr11_-_111637114 BC027596 AK296455 AK301705 AF087438 AF163473 NM_001177562 NM_001177563 NM_002716 NM_181699 NM_181700	49036	-	TSC_hg19_v1_chr11_-_111742001 NM_001077691 NM_001077692	153928	-	NM_015191|SIK2|23235|salt-inducible kinase 2##AK291233|SIK2|23235|salt-inducible kinase 2##AL136764|SIK2|23235|salt-inducible kinase 2##AB018324|SIK2|23235|salt-inducible kinase 2##AB096248|SIK2|23235|salt-inducible kinase 2##AK000396|SIK2|23235|salt-inducible kinase 2##BC113459|SIK2|23235|salt-inducible kinase 2##BC117183|SIK2|23235|salt-inducible kinase 2##AB084424|SIK2|23235|salt-inducible kinase 2##AY358554|LAYN|143903|layilin##AK055654|LAYN|143903|layilin##AK296231|LAYN|143903|layilin##BC025407|LAYN|143903|layilin##AK298165|LAYN|143903|layilin##M65254|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##DQ890606|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##DQ894107|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##EU176538|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AK292275|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AK293388|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AK294716|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##BC027596|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AK296455|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AK301705|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AF087438|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##AF163473|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##NM_001177562|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##NM_001177563|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##NM_002716|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##NM_181699|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##NM_181700|PPP2R1B|5519|protein phosphatase 2, regulatory subunit A, beta##NM_001077691|ALG9|79796|asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae)##NM_001077692|ALG9|79796|asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae)	0.998878	0.0	
chr1	160522341	160522514	reg1010258.p2	5.555	+	AB590474 AJ306388 AJ277141 AK313549 BC113893 BC114495 AK310085 AL832854 BC090928 AK300013 AK301026 AY358159 TSC_hg19_v1_chr1_-_160493043 AK303990 AK125624 NM_001184714 NM_001184715 NM_001184716 NM_052931	-29398	-	NM_020335 TSC_hg19_v1_chr1_+_160370394	-152048	+	M96739 AK313700 NM_005598 BC013789	-185563	+	AB590277 CR541847 CU676492 DQ891708 DQ894872 BC020063 U82988 TSC_hg19_v1_chr1_-_160549268 AJ223324 AK296290 CR933666	26820	-	AK313496 TSC_hg19_v1_chr1_-_160549273 AF054815 AF054816 AF054817 AF054818 U96627 Y12632 NM_001184879 NM_001184881 NM_001184882 NM_003874	26861	-	AK314244 NM_003037 BC012602	94636	-	AJ306388|SLAMF6|114836|SLAM family member 6##AJ277141|SLAMF6|114836|SLAM family member 6##AK313549|SLAMF6|114836|SLAM family member 6##BC113893|SLAMF6|114836|SLAM family member 6##BC114495|SLAMF6|114836|SLAM family member 6##AK310085|SLAMF6|114836|SLAM family member 6##AL832854|SLAMF6|114836|SLAM family member 6##BC090928|SLAMF6|114836|SLAM family member 6##AK300013|SLAMF6|114836|SLAM family member 6##AK301026|SLAMF6|114836|SLAM family member 6##AY358159|SLAMF6|114836|SLAM family member 6##AK303990|SLAMF6|114836|SLAM family member 6##AK125624|SLAMF6|114836|SLAM family member 6##NM_001184714|SLAMF6|114836|SLAM family member 6##NM_001184715|SLAMF6|114836|SLAM family member 6##NM_001184716|SLAMF6|114836|SLAM family member 6##NM_052931|SLAMF6|114836|SLAM family member 6##NM_020335|VANGL2|57216|vang-like 2 (van gogh, Drosophila)##M96739|NHLH1|4807|nescient helix loop helix 1##AK313700|NHLH1|4807|nescient helix loop helix 1##NM_005598|NHLH1|4807|nescient helix loop helix 1##BC013789|NHLH1|4807|nescient helix loop helix 1##CR541847|CD84|8832|CD84 molecule##DQ891708|CD84|8832|CD84 molecule##DQ894872|CD84|8832|CD84 molecule##BC020063|CD84|8832|CD84 molecule##U82988|CD84|8832|CD84 molecule##AJ223324|CD84|8832|CD84 molecule##AK296290|CD84|8832|CD84 molecule##CR933666|CD84|8832|CD84 molecule##AK313496|CD84|8832|CD84 molecule##AF054815|CD84|8832|CD84 molecule##AF054816|CD84|8832|CD84 molecule##AF054817|CD84|8832|CD84 molecule##AF054818|CD84|8832|CD84 molecule##U96627|CD84|8832|CD84 molecule##Y12632|CD84|8832|CD84 molecule##NM_001184879|CD84|8832|CD84 molecule##NM_001184881|CD84|8832|CD84 molecule##NM_001184882|CD84|8832|CD84 molecule##NM_003874|CD84|8832|CD84 molecule##AK314244|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_003037|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BC012602|SLAMF1|6504|signaling lymphocytic activation molecule family member 1	0.0	0.0	
chr3	9494234	9494387	reg1007495.p1	5.555	+	TSC_hg19_v1_chr3_+_9476522 AB384632	-17794	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-54736	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	-54949	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	101153	-	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	196832	+	TSC_hg19_v1_chr3_+_9691188 AK295891 BC050626 AK298846 AL713695	196879	+	AK092046|SETD5|55209|SET domain containing 5##NM_001080517|SETD5|55209|SET domain containing 5##BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14##AK295891|MTMR14|64419|myotubularin related protein 14##BC050626|MTMR14|64419|myotubularin related protein 14##AK298846|MTMR14|64419|myotubularin related protein 14##AL713695|MTMR14|64419|myotubularin related protein 14	0.997464	0.0	
chrX	65266858	65267023	reg1007750.p2	5.555	+	DQ891770 DQ894953 BC010525 AJ132502 AK293215 AK298389 AK075153 AK297050 AK301417 AK075171 NM_001100431 NM_001184830 NM_001184831 NM_007268	-7038	-	TSC_hg19_v1_chrX_+_65235302 DQ680071 DQ680072	-31649	+	TSC_hg19_v1_chrX_+_64887602 AK309986 M69066 AF295356 DQ892653 DQ895892	-379292	+	NM_138737 TSC_hg19_v1_chrX_+_65382512	115535	+	TSC_hg19_v1_chrX_+_65382627 BC011561	115704	+	NM_001130860 AK311043 AB014598 NM_014799 AY358990 AK307761	117202	+	DQ891770|VSIG4|11326|V-set and immunoglobulin domain containing 4##DQ894953|VSIG4|11326|V-set and immunoglobulin domain containing 4##BC010525|VSIG4|11326|V-set and immunoglobulin domain containing 4##AJ132502|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK293215|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK298389|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075153|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK297050|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK301417|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075171|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001100431|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184830|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184831|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_007268|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK309986|MSN|4478|moesin##M69066|MSN|4478|moesin##DQ892653|MSN|4478|moesin##DQ895892|MSN|4478|moesin##NM_138737|HEPH|9843|hephaestin##BC011561|HEPH|9843|hephaestin##NM_001130860|HEPH|9843|hephaestin##AK311043|HEPH|9843|hephaestin##AB014598|HEPH|9843|hephaestin##NM_014799|HEPH|9843|hephaestin##AY358990|HEPH|9843|hephaestin##AK307761|HEPH|9843|hephaestin	0.0	0.0	
chr14	75555404	75555556	reg1009696.p2	5.554	+	NM_001042430 NM_024643 AK223359 AK303882 TSC_hg19_v1_chr14_+_75536343 AK026746 BC004259	-19137	+	TSC_hg19_v1_chr14_-_75530719 BC035568 NM_001107 NM_203488 AK312101	-24746	-	AF195657 BC012544 TSC_hg19_v1_chr14_-_75518171 NM_001040108 NM_014381	-37297	-	AY048580 AB463142 AY080896 TSC_hg19_v1_chr14_-_75593718 BC093881 BC112101	38190	-	TSC_hg19_v1_chr14_-_75593752 AB082526 AK128693 NM_033116	38272	-	AK023615 TSC_hg19_v1_chr14_-_75600130	44640	-	NM_001042430|FAM164C|79696|family with sequence similarity 164, member C##NM_024643|FAM164C|79696|family with sequence similarity 164, member C##AK223359|FAM164C|79696|family with sequence similarity 164, member C##AK303882|FAM164C|79696|family with sequence similarity 164, member C##AK026746|FAM164C|79696|family with sequence similarity 164, member C##BC004259|FAM164C|79696|family with sequence similarity 164, member C##BC035568|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_001107|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_203488|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##AK312101|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##AF195657|MLH3|27030|mutL homolog 3 (E. coli)##BC012544|MLH3|27030|mutL homolog 3 (E. coli)##NM_001040108|MLH3|27030|mutL homolog 3 (E. coli)##NM_014381|MLH3|27030|mutL homolog 3 (E. coli)##AY048580|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AY080896|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC093881|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC112101|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AB082526|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AK128693|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##NM_033116|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AK023615|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)	0.0	0.94512	CTCF.p2:-27:0.945
chr15	65184468	65184608	reg1007350.p2	5.554	+	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	-50431	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-66703	-	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-116792	-	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	19551	+	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	97271	-	TSC_hg19_v1_chr15_-_65282170 AK172849 AK225527 AK312943 BC000244	97596	-	NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK172849|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK225527|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK312943|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##BC000244|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.0	0.0	
chr22	46988271	46988431	reg1010652.p1	5.554	+	AF231024 NM_014246 TSC_hg19_v1_chr22_-_46933142	-55237	-	TSC_hg19_v1_chr22_+_46731810 AK303020	-256541	+	TSC_hg19_v1_chr22_+_46731615 AB178028 AK001002 AK295173 AK290712 BC066593 BC080631 CR456445 BC027991 BC012076 AB463324 CU013043 CU013331	-256722	+	CR456470 NM_015124 BC129837 AB463563 CU013020 CU013308	34325	+	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	145728	-	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	145804	-	AF231024|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##NM_014246|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##AK303020|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AB178028|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK001002|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK295173|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##AK290712|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC066593|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC080631|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CR456445|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC027991|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##BC012076|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013043|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU013331|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CR456470|GRAMD4|23151|GRAM domain containing 4##NM_015124|GRAMD4|23151|GRAM domain containing 4##BC129837|GRAMD4|23151|GRAM domain containing 4##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase	0.999509	0.0	denovo_WM_7:1:0.953
chr4	100772639	100772712	reg1006798.p2	5.554	+	NM_014395 AF186022 AF163254 AF161551 AK301355 AF178987 BC012924 AB528911 DQ893576 DQ894665	-34650	+	TSC_hg19_v1_chr4_+_100495977 AK225328 BC062696 X59657 AK290793 BC125110 BC125111 X75500 X91148	-276668	+	AK302602 NM_000253	-287436	+	AF130115 TSC_hg19_v1_chr4_-_100815585 AK311755 BC110402 BC005340 AK223311 AF201947 BC026245	42900	-	TSC_hg19_v1_chr4_-_100815667 NM_001243736 NM_021970	43009	-	HQ257892 TSC_hg19_v1_chr4_-_100867740 AY358272 BX537609 AL833412 BC022248	95079	-	NM_014395|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF186022|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF163254|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF161551|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AK301355|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF178987|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##BC012924|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##DQ893576|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##DQ894665|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AK225328|MTTP|4547|microsomal triglyceride transfer protein##BC062696|MTTP|4547|microsomal triglyceride transfer protein##X59657|MTTP|4547|microsomal triglyceride transfer protein##AK290793|MTTP|4547|microsomal triglyceride transfer protein##BC125110|MTTP|4547|microsomal triglyceride transfer protein##BC125111|MTTP|4547|microsomal triglyceride transfer protein##X75500|MTTP|4547|microsomal triglyceride transfer protein##X91148|MTTP|4547|microsomal triglyceride transfer protein##AK302602|MTTP|4547|microsomal triglyceride transfer protein##NM_000253|MTTP|4547|microsomal triglyceride transfer protein##AF130115|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AK311755|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC110402|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC005340|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AK223311|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AF201947|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC026245|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##NM_001243736|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##NM_021970|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##HQ257892|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##AY358272|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##BX537609|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##AL833412|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##BC022248|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14	0.998451	0.0	
chr1	102459522	102459606	reg1014415.p1	5.553	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-756994	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-757183	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-968131	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	2923	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	3226	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1037219	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	0.999129	0.0	denovo_WM_7:-46:0.594	denovo_WM_7:-47:0.230
chr17	41798206	41798301	reg1003841.p1	5.553	+	NM_001040002 AK291139	-58978	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	-59338	-	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-174527	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	37890	-	AK226170 TSC_hg19_v1_chr17_-_41856314 AB451424 BT019522 CU678116 DQ893122 DQ896399 BC035701 AK129822 L05147 BC002682 NM_004090	58031	-	BC054872 BC070324 NM_001136483 BC146971 AK125817	59561	+	NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin##AK226170|DUSP3|1845|dual specificity phosphatase 3##AB451424|DUSP3|1845|dual specificity phosphatase 3##BT019522|DUSP3|1845|dual specificity phosphatase 3##DQ893122|DUSP3|1845|dual specificity phosphatase 3##DQ896399|DUSP3|1845|dual specificity phosphatase 3##BC035701|DUSP3|1845|dual specificity phosphatase 3##AK129822|DUSP3|1845|dual specificity phosphatase 3##L05147|DUSP3|1845|dual specificity phosphatase 3##BC002682|DUSP3|1845|dual specificity phosphatase 3##NM_004090|DUSP3|1845|dual specificity phosphatase 3##BC054872|C17orf105|284067|chromosome 17 open reading frame 105##BC070324|C17orf105|284067|chromosome 17 open reading frame 105##NM_001136483|C17orf105|284067|chromosome 17 open reading frame 105##BC146971|C17orf105|284067|chromosome 17 open reading frame 105##AK125817|C17orf105|284067|chromosome 17 open reading frame 105	0.0	0.0	
chr19	16477585	16477738	reg1000406.p2	5.553	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-41892	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-42020	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-168911	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	105115	-	TSC_hg19_v1_chr19_-_16582810 AK291359	105191	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	129309	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.0	0.0	
chr8	52365372	52365552	reg1008530.p2	5.553	+	AJ003030 NM_018967	-1540866	+	NM_001007176 BC017981 AJ276240	-2380553	+	AB464227 CU677105 EU446862 TSC_hg19_v1_chr8_-_49833989 BC015895 BC014890 AK223368 AK312661 NM_003068	-2531552	-	EU170240 AY877349 NM_144651	356491	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	446140	-	TSC_hg19_v1_chr8_-_52811724 NM_052937	446265	-	AJ003030|SNTG1|54212|syntrophin, gamma 1##NM_018967|SNTG1|54212|syntrophin, gamma 1##NM_001007176|C8orf22|492307|chromosome 8 open reading frame 22##BC017981|C8orf22|492307|chromosome 8 open reading frame 22##AJ276240|C8orf22|492307|chromosome 8 open reading frame 22##EU446862|SNAI2|6591|snail homolog 2 (Drosophila)##BC015895|SNAI2|6591|snail homolog 2 (Drosophila)##BC014890|SNAI2|6591|snail homolog 2 (Drosophila)##AK223368|SNAI2|6591|snail homolog 2 (Drosophila)##AK312661|SNAI2|6591|snail homolog 2 (Drosophila)##NM_003068|SNAI2|6591|snail homolog 2 (Drosophila)##EU170240|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AY877349|PXDNL|137902|peroxidasin homolog (Drosophila)-like##NM_144651|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##NM_052937|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	0.0	0.0	
chr11	76758610	76758790	reg1000246.p2	5.552	+	NM_138706 AK127544 AK292773 TSC_hg19_v1_chr11_+_76745441 AK313682 AK172863 BC103908 BC103909 BC103910	-13241	+	TSC_hg19_v1_chr11_+_76571985 AK308856 AK002100 AK316120 AK295327 AK295142 AK294978 BC049837 BC063034 AK293800 BC073853 CU687264	-186707	+	TSC_hg19_v1_chr11_+_76571961 NM_018367 AK315000 AF327353 AF214454	-186768	+	TSC_hg19_v1_chr11_+_76778017 BC018123 NM_004055 AK128124 AK313132 AK310978 AK094150 AB209087	19327	+	CU686775 BC069115 BC069365 NM_006189	55184	+	NM_000260 NM_001127179 U39226 NM_001127180 U34227 U55208 U55209 BC144519	80628	+	NM_138706|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK127544|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK292773|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK313682|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK172863|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103908|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103909|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103910|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK308856|ACER3|55331|alkaline ceramidase 3##AK002100|ACER3|55331|alkaline ceramidase 3##AK316120|ACER3|55331|alkaline ceramidase 3##AK295327|ACER3|55331|alkaline ceramidase 3##AK295142|ACER3|55331|alkaline ceramidase 3##AK294978|ACER3|55331|alkaline ceramidase 3##BC049837|ACER3|55331|alkaline ceramidase 3##BC063034|ACER3|55331|alkaline ceramidase 3##AK293800|ACER3|55331|alkaline ceramidase 3##BC073853|ACER3|55331|alkaline ceramidase 3##NM_018367|ACER3|55331|alkaline ceramidase 3##AK315000|ACER3|55331|alkaline ceramidase 3##AF327353|ACER3|55331|alkaline ceramidase 3##AF214454|ACER3|55331|alkaline ceramidase 3##BC018123|CAPN5|726|calpain 5##NM_004055|CAPN5|726|calpain 5##AK128124|CAPN5|726|calpain 5##AK313132|CAPN5|726|calpain 5##AK310978|CAPN5|726|calpain 5##AK094150|CAPN5|726|calpain 5##AB209087|CAPN5|726|calpain 5##BC069115|OMP|4975|olfactory marker protein##BC069365|OMP|4975|olfactory marker protein##NM_006189|OMP|4975|olfactory marker protein##NM_000260|MYO7A|4647|myosin VIIA##NM_001127179|MYO7A|4647|myosin VIIA##U39226|MYO7A|4647|myosin VIIA##NM_001127180|MYO7A|4647|myosin VIIA##U34227|MYO7A|4647|myosin VIIA##U55208|MYO7A|4647|myosin VIIA##U55209|MYO7A|4647|myosin VIIA##BC144519|MYO7A|4647|myosin VIIA	0.993331	0.0	
chr17	40087031	40087198	reg1007248.p2	5.552	+	BC025390 TSC_hg19_v1_chr17_+_40086881 NM_031421 AL136760 BC067297 AK055498 AM393695 AB463310 CU688280 CU692988	-189	+	TSC_hg19_v1_chr17_-_40075239 BC006195 NM_001096 NM_198830 AK295675 AK312315	-11849	-	TSC_hg19_v1_chr17_-_40075237 AK304802	-11881	-	TSC_hg19_v1_chr17_+_40118778 NM_033133	31625	+	TSC_hg19_v1_chr17_+_40118815 BC028040 BC006392 AK295351 AK026876 AK097833 AK098384 AK294179 BC001362 BC011046	31722	+	TSC_hg19_v1_chr17_+_40119669 AK308696	32612	+	BC025390|TTC25|83538|tetratricopeptide repeat domain 25##NM_031421|TTC25|83538|tetratricopeptide repeat domain 25##AL136760|TTC25|83538|tetratricopeptide repeat domain 25##BC067297|TTC25|83538|tetratricopeptide repeat domain 25##AK055498|TTC25|83538|tetratricopeptide repeat domain 25##AM393695|TTC25|83538|tetratricopeptide repeat domain 25##BC006195|ACLY|47|ATP citrate lyase##NM_001096|ACLY|47|ATP citrate lyase##NM_198830|ACLY|47|ATP citrate lyase##AK295675|ACLY|47|ATP citrate lyase##AK312315|ACLY|47|ATP citrate lyase##AK304802|ACLY|47|ATP citrate lyase##NM_033133|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC028040|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC006392|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK295351|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK026876|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK097833|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK098384|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##AK294179|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC001362|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase##BC011046|CNP|1267|2',3'-cyclic nucleotide 3' phosphodiesterase	1.985518	0.0	denovo_WM_7:27:0.957	denovo_WM_7:42:0.956
chr6	14664318	14664419	reg1009265.p1	5.552	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-546346	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-546463	+	NM_001251901	-546882	+	TSC_hg19_v1_chr6_+_15245702 AK302624	581349	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	582044	+	BC033996 TSC_hg19_v1_chr6_-_15248900	584533	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	0.756697	0.0	denovo_WM_7:48:0.206	denovo_WM_7:49:0.480
chr11	120796744	120796913	reg1007887.p2	5.551	+	AB384776 NM_014619 S67803	-265801	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-414363	+	BC063117 NM_001198665 NM_015313	-589211	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	97982	+	NM_005422	176546	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	366577	+	NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_005422|TECTA|7007|tectorin alpha##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like	0.0	0.0	
chr16	18801735	18801884	reg1008217.p1	5.551	+	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-154	-	TSC_hg19_v1_chr16_-_18798077 AK127316	-3713	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	-228418	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	10973	-	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	135922	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	193510	+	BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7	0.9984	0.0	denovo_WM_7:71:0.494	denovo_WM_7:72:0.494
chr3	113932937	113933064	reg1001913.p2	5.551	+	AY228457 AY228458 NM_000796 NM_033663 AY228454	-35084	-	TSC_hg19_v1_chr3_+_113775661 AK023022	-157326	+	TSC_hg19_v1_chr3_+_113775628 AK299313 BC039265 NM_024638 AL833709 AK296938	-157394	+	NM_007136 X65233	23424	-	EU675310 NM_173799 AK097192 BC101288 BC101289 BC101290 BC101291	79853	+	AF139460 NM_001164342	169488	-	AY228457|DRD3|1814|dopamine receptor D3##AY228458|DRD3|1814|dopamine receptor D3##NM_000796|DRD3|1814|dopamine receptor D3##NM_033663|DRD3|1814|dopamine receptor D3##AY228454|DRD3|1814|dopamine receptor D3##AK023022|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK299313|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##BC039265|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##NM_024638|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AL833709|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##AK296938|QTRTD1|79691|queuine tRNA-ribosyltransferase domain containing 1##NM_007136|ZNF80|7634|zinc finger protein 80##X65233|ZNF80|7634|zinc finger protein 80##EU675310|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_173799|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AK097192|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101288|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101289|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101290|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101291|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AF139460|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164342|ZBTB20|26137|zinc finger and BTB domain containing 20	0.0	0.0	
chr3	19581706	19581874	reg1004536.p2	5.551	+	AK295633 AY053503 NM_144633 AB209053 AK309034	-391786	+	BC001744 NM_001131010	-1101557	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	-1114993	-	BC028198 AK097644 NM_144715	393898	-	TSC_hg19_v1_chr3_+_19988586 NM_004162	406899	+	TSC_hg19_v1_chr3_+_19988870 AK312618 BC018288 AK309287 AK295992 BC001267	407111	+	AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC028198|EFHB|151651|EF-hand domain family, member B##AK097644|EFHB|151651|EF-hand domain family, member B##NM_144715|EFHB|151651|EF-hand domain family, member B##NM_004162|RAB5A|5868|RAB5A, member RAS oncogene family##AK312618|RAB5A|5868|RAB5A, member RAS oncogene family##BC018288|RAB5A|5868|RAB5A, member RAS oncogene family##AK309287|RAB5A|5868|RAB5A, member RAS oncogene family##AK295992|RAB5A|5868|RAB5A, member RAS oncogene family##BC001267|RAB5A|5868|RAB5A, member RAS oncogene family	0.092806	0.0	
chr7	99761039	99761137	reg1006329.p1	5.551	+	TSC_hg19_v1_chr7_-_99756347 AK054872	-4740	-	TSC_hg19_v1_chr7_-_99756309 BC015722 NM_018275 BC094727 AK310170	-4789	-	TSC_hg19_v1_chr7_+_99746538 NM_001008395 BC105609 BC063401 BC130553 BC130559	-14533	+	BC012976 TSC_hg19_v1_chr7_-_99766194 AF316113	5115	-	TSC_hg19_v1_chr7_-_99766239 NM_024637	5217	-	AB587513 AM392909 CU693354 DQ893325 DQ896641 AL834418 TSC_hg19_v1_chr7_-_99774981 AB209144 AK096281 BC027972 NM_152742 AY093588	13839	-	AK054872|C7orf43|55262|chromosome 7 open reading frame 43##BC015722|C7orf43|55262|chromosome 7 open reading frame 43##NM_018275|C7orf43|55262|chromosome 7 open reading frame 43##BC094727|C7orf43|55262|chromosome 7 open reading frame 43##AK310170|C7orf43|55262|chromosome 7 open reading frame 43##NM_001008395|C7orf59|389541|chromosome 7 open reading frame 59##BC105609|C7orf59|389541|chromosome 7 open reading frame 59##BC063401|C7orf59|389541|chromosome 7 open reading frame 59##BC130553|C7orf59|389541|chromosome 7 open reading frame 59##BC130559|C7orf59|389541|chromosome 7 open reading frame 59##BC012976|GAL3ST4|79690|galactose-3-O-sulfotransferase 4##AF316113|GAL3ST4|79690|galactose-3-O-sulfotransferase 4##NM_024637|GAL3ST4|79690|galactose-3-O-sulfotransferase 4##AM392909|GPC2|221914|glypican 2##DQ893325|GPC2|221914|glypican 2##DQ896641|GPC2|221914|glypican 2##AL834418|GPC2|221914|glypican 2##AK096281|GPC2|221914|glypican 2##BC027972|GPC2|221914|glypican 2##NM_152742|GPC2|221914|glypican 2##AY093588|GPC2|221914|glypican 2	0.990719	0.0	denovo_WM_7:18:0.237	denovo_WM_7:19:0.237	denovo_WM_7:20:0.237	denovo_WM_7:21:0.237
chr9	19138275	19138386	reg1004316.p1	5.551	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-10782	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-10853	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-35321	-	NM_017925 BC144484 BC144485	152421	+	TSC_hg19_v1_chr9_-_19378815 BC035447	240536	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	241897	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	0.058592	0.0	
chr13	28587263	28587443	reg1001860.p2	5.550	+	NM_001105577	-24580	-	TSC_hg19_v1_chr13_-_28543453 Y13709	-43890	-	TSC_hg19_v1_chr13_-_28543325 BC014461 NM_001265	-44045	-	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	87334	-	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	125313	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	481891	-	NM_001105577|PRHOXNB|646625|parahox cluster neighbor##Y13709|CDX2|1045|caudal type homeobox 2##BC014461|CDX2|1045|caudal type homeobox 2##NM_001265|CDX2|1045|caudal type homeobox 2##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)	0.0	0.0	
chr19	17530551	17530722	reg1007256.p1	5.550	+	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	-14070	+	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	-14217	-	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	-42504	-	TSC_hg19_v1_chr19_+_17530855 AK057057 AK289487	212	+	TSC_hg19_v1_chr19_+_17530872 BC011840 NM_138401 BC007883	263	+	NM_001190844	28739	-	AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##AK057057|FAM125A|93343|family with sequence similarity 125, member A##AK289487|FAM125A|93343|family with sequence similarity 125, member A##BC011840|FAM125A|93343|family with sequence similarity 125, member A##NM_138401|FAM125A|93343|family with sequence similarity 125, member A##BC007883|FAM125A|93343|family with sequence similarity 125, member A##NM_001190844|TMEM221|100130519|transmembrane protein 221	0.0	0.0	
chr3	121456444	121456544	reg1008539.p1	5.550	+	AK312750 TSC_hg19_v1_chr3_-_121379784 AK298663 NM_005335	-76718	-	X16663 BC016758 TSC_hg19_v1_chr3_-_121379751 AK298696 AK300301	-76768	-	NM_016298 AK314400 AF204674	-144278	+	TSC_hg19_v1_chr3_-_121468589 BC065301 D25542 AB371588 AB593126 AK300437 NM_004487 X75304	12065	-	TSC_hg19_v1_chr3_-_121553886 AY964668 BC005806 D25278 AY964667	97372	-	TSC_hg19_v1_chr3_-_121553908 AB062481 AY714228 NM_001023570 NM_001023571	97433	-	AK312750|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK298663|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##NM_005335|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##X16663|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##BC016758|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK298696|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##AK300301|HCLS1|3059|hematopoietic cell-specific Lyn substrate 1##NM_016298|FBXO40|51725|F-box protein 40##AK314400|FBXO40|51725|F-box protein 40##AF204674|FBXO40|51725|F-box protein 40##BC065301|GOLGB1|2804|golgin B1##D25542|GOLGB1|2804|golgin B1##AB371588|GOLGB1|2804|golgin B1##AB593126|GOLGB1|2804|golgin B1##AK300437|GOLGB1|2804|golgin B1##NM_004487|GOLGB1|2804|golgin B1##X75304|GOLGB1|2804|golgin B1##AY964668|IQCB1|9657|IQ motif containing B1##BC005806|IQCB1|9657|IQ motif containing B1##D25278|IQCB1|9657|IQ motif containing B1##AY964667|IQCB1|9657|IQ motif containing B1##AB062481|IQCB1|9657|IQ motif containing B1##AY714228|IQCB1|9657|IQ motif containing B1##NM_001023570|IQCB1|9657|IQ motif containing B1##NM_001023571|IQCB1|9657|IQ motif containing B1	0.997013	0.0	denovo_WM_7:12:0.985
chr12	25105495	25105675	reg1005777.p2	5.548	+	TSC_hg19_v1_chr12_-_25102303 AK056255 NM_001178091 NM_001178092 NM_005504	-3249	-	TSC_hg19_v1_chr12_-_25102021 BX647122 AK128527	-3565	-	TSC_hg19_v1_chr12_-_25101988 AK299088	-3629	-	BC035880 NM_001101339 BC046192 BC062789	44827	-	NM_001204126 NM_001204127 NM_006152	99595	+	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	99995	+	AK056255|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178091|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178092|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_005504|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BX647122|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK128527|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK299088|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein	1.960532	0.0	denovo_WM_7:-7:0.902	denovo_WM_7:7:0.854
chr18	19173691	19173854	reg1006955.p1	5.548	+	TSC_hg19_v1_chr18_+_18822192 AB051559 NM_001142966 BC125017	-351529	+	TSC_hg19_v1_chr18_-_18691765 AK057038 NM_005406	-481984	-	TSC_hg19_v1_chr18_-_18691640 AK307388	-482134	-	TSC_hg19_v1_chr18_-_19180616 AB067498	6847	-	TSC_hg19_v1_chr18_-_19180666 NM_052911 AK096746	6906	-	TSC_hg19_v1_chr18_-_19180830 AL832041	7104	-	AB051559|GREB1L|80000|growth regulation by estrogen in breast cancer-like##NM_001142966|GREB1L|80000|growth regulation by estrogen in breast cancer-like##BC125017|GREB1L|80000|growth regulation by estrogen in breast cancer-like##AK057038|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1##NM_005406|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1##AK307388|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1##AB067498|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##NM_052911|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##AK096746|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##AL832041|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)	0.994137	0.0	denovo_WM_7:8:0.459	denovo_WM_7:9:0.459
chr19	10969037	10969158	reg1006271.p2	5.548	+	BC157863 NM_001136482	-9992	+	AB528501 DQ892640 DQ895878 BC002443 BC018831 TSC_hg19_v1_chr19_-_10946889 U41804 NM_006858	-22173	-	TSC_hg19_v1_chr19_+_10828827 BC039596 AK289831	-140238	+	TSC_hg19_v1_chr19_+_10982255 NM_199141	13153	+	TSC_hg19_v1_chr19_+_10982381 AL833242	13339	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	70142	-	BC157863|C19orf38|255809|chromosome 19 open reading frame 38##NM_001136482|C19orf38|255809|chromosome 19 open reading frame 38##DQ892640|TMED1|11018|transmembrane emp24 protein transport domain containing 1##DQ895878|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC002443|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC018831|TMED1|11018|transmembrane emp24 protein transport domain containing 1##U41804|TMED1|11018|transmembrane emp24 protein transport domain containing 1##NM_006858|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC039596|DNM2|1785|dynamin 2##AK289831|DNM2|1785|dynamin 2##NM_199141|CARM1|10498|coactivator-associated arginine methyltransferase 1##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2	0.0	0.852225	CTCF.p2:21:0.852
chr2	3643749	3643910	reg1007386.p2	5.548	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-1260	+	X74803 TSC_hg19_v1_chr2_+_3627765	-16084	+	TSC_hg19_v1_chr2_+_3623128 BC071919 AB464168 DQ892985 DQ896234 M77233 AF085824	-20664	+	AK302299 NM_018436 BC029652	61968	+	U23752 AB028641 NM_003108 BC025789 AB464713	2188986	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	3362071	-	AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##X74803|RPS7|6201|ribosomal protein S7##BC071919|RPS7|6201|ribosomal protein S7##DQ892985|RPS7|6201|ribosomal protein S7##DQ896234|RPS7|6201|ribosomal protein S7##M77233|RPS7|6201|ribosomal protein S7##AF085824|RPS7|6201|ribosomal protein S7##AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	0.661062	0.0	denovo_WM_7:106:0.331	denovo_WM_7:107:0.331
chr1	241974432	241974578	reg1006357.p1	5.547	+	AK122927 NM_144625	-158926	+	TSC_hg19_v1_chr1_-_241803669 BC051900 AF140242 BC073872 BC062622 AF303588 BC036773 BC026242 NM_014322	-171030	-	BC117360 NM_001821 X64728	-175339	-	TSC_hg19_v1_chr1_+_242011520 NM_130398 AK291291	36999	+	BC007491 TSC_hg19_v1_chr1_+_242011556	37045	+	NM_003686 NM_006027 AF042282 AF091740 AF060479 AF084974	37580	+	AK122927|WDR64|128025|WD repeat domain 64##NM_144625|WDR64|128025|WD repeat domain 64##BC051900|OPN3|23596|opsin 3##AF140242|OPN3|23596|opsin 3##BC073872|OPN3|23596|opsin 3##BC062622|OPN3|23596|opsin 3##AF303588|OPN3|23596|opsin 3##BC036773|OPN3|23596|opsin 3##NM_014322|OPN3|23596|opsin 3##BC117360|CHML|1122|choroideremia-like (Rab escort protein 2)##NM_001821|CHML|1122|choroideremia-like (Rab escort protein 2)##X64728|CHML|1122|choroideremia-like (Rab escort protein 2)##NM_130398|EXO1|9156|exonuclease 1##AK291291|EXO1|9156|exonuclease 1##BC007491|EXO1|9156|exonuclease 1##NM_003686|EXO1|9156|exonuclease 1##NM_006027|EXO1|9156|exonuclease 1##AF042282|EXO1|9156|exonuclease 1##AF091740|EXO1|9156|exonuclease 1##AF060479|EXO1|9156|exonuclease 1##AF084974|EXO1|9156|exonuclease 1	0.0	0.0	
chr16	30563152	30563258	reg1006535.p1	5.547	+	TSC_hg19_v1_chr16_-_30546234 AB209546 AK299308 AK054567 BC001361 NM_023931 AK316254	-17015	-	TSC_hg19_v1_chr16_-_30546003 AK292192	-17205	-	TSC_hg19_v1_chr16_-_30538096 AK295274	-25123	-	EU446557 BC008821 AK093992 AX748400 NM_001172679 NM_033410 TSC_hg19_v1_chr16_-_30569709	6403	-	EU446577 TSC_hg19_v1_chr16_-_30583034 BC018997	19817	-	NM_001024683 NM_145271	20522	-	AB209546|ZNF747|65988|zinc finger protein 747##AK054567|ZNF747|65988|zinc finger protein 747##BC001361|ZNF747|65988|zinc finger protein 747##NM_023931|ZNF747|65988|zinc finger protein 747##AK292192|ZNF747|65988|zinc finger protein 747##AK295274|ZNF768|79724|zinc finger protein 768##EU446557|ZNF764|92595|zinc finger protein 764##BC008821|ZNF764|92595|zinc finger protein 764##AK093992|ZNF764|92595|zinc finger protein 764##NM_001172679|ZNF764|92595|zinc finger protein 764##NM_033410|ZNF764|92595|zinc finger protein 764##EU446577|ZNF688|146542|zinc finger protein 688##BC018997|ZNF688|146542|zinc finger protein 688##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688	1.945441	0.0	denovo_WM_7:-83:0.212	denovo_WM_7:-84:0.224	denovo_WM_7:-86:0.205	denovo_WM_7:-101:0.283	denovo_WM_7:-102:0.360
chr20	52509940	52510046	reg1003941.p1	5.547	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-299194	-	AF041259 NM_006526	-310358	-	AK302570 NM_001193421	-708172	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	177069	-	AK315220 NM_003657	177310	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	280527	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr6	137427492	137427651	reg1009271.p1	5.547	+	AF184971 AK315293 BC113574 BC113602 NM_014432 AK307072	-61326	-	TSC_hg19_v1_chr6_-_137365811 AY358883 HQ258452	-61733	-	AK316095 BC087842 NM_001008783 AK295424	-184118	+	AY044429 AY358737 AY040566 AY040567 AY040568 AY358111 AJ313161 AJ313162 NM_052962 NM_181309 NM_181310	67180	-	TSC_hg19_v1_chr6_-_137540496 BT006814 AB527981 CU675119 AF056979 AK294252	112897	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	112941	-	AF184971|IL20RA|53832|interleukin 20 receptor, alpha##AK315293|IL20RA|53832|interleukin 20 receptor, alpha##BC113574|IL20RA|53832|interleukin 20 receptor, alpha##BC113602|IL20RA|53832|interleukin 20 receptor, alpha##NM_014432|IL20RA|53832|interleukin 20 receptor, alpha##AK307072|IL20RA|53832|interleukin 20 receptor, alpha##AY358883|IL20RA|53832|interleukin 20 receptor, alpha##HQ258452|IL20RA|53832|interleukin 20 receptor, alpha##AK316095|SLC35D3|340146|solute carrier family 35, member D3##BC087842|SLC35D3|340146|solute carrier family 35, member D3##NM_001008783|SLC35D3|340146|solute carrier family 35, member D3##AK295424|SLC35D3|340146|solute carrier family 35, member D3##AY044429|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358737|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040566|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040567|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040568|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358111|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313161|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313162|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_052962|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181309|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181310|IL22RA2|116379|interleukin 22 receptor, alpha 2##BT006814|IFNGR1|3459|interferon gamma receptor 1##AF056979|IFNGR1|3459|interferon gamma receptor 1##AK294252|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1	0.0	0.0	
chr7	138151146	138151284	reg1006528.p1	5.547	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	-5979	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	-6223	+	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	-389997	+	BC036796 NM_174959	197753	-	NM_001139456	212574	-	NM_130841	307566	-	AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC036796|SVOPL|136306|SVOP-like##NM_174959|SVOPL|136306|SVOP-like##NM_001139456|SVOPL|136306|SVOP-like##NM_130841|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4	0.999279	0.0	denovo_WM_7:1:0.239	denovo_WM_7:2:0.239	denovo_WM_7:3:0.239	denovo_WM_7:4:0.239
chr11	118442841	118442960	reg1006248.p2	5.546	+	TSC_hg19_v1_chr11_-_118436639 AL136934 BC011647 AK289521 AJ249980 BC012802 BC022856 AK025480 NM_001168618 NM_020153	-6204	-	TSC_hg19_v1_chr11_+_118401916 AK075437 AK293670 AK027305 AK056325 AK096260 AK124814 AK225415 AK292359 AK297255 AY358919 BC042896 BC051841	-40981	+	TSC_hg19_v1_chr11_+_118401755 NM_001144034 NM_001144035 NM_001144036 NM_001144037 NM_001144038 NM_032780	-41122	+	TSC_hg19_v1_chr11_+_118443110 NM_001142281 NM_001655 AK304019 AK312298 BC064936 BX640860	214	+	TSC_hg19_v1_chr11_+_118443146 X81197 BC080638 BC093636 BC093638	258	+	AB094090 NM_015157	34312	+	AL136934|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##BC011647|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##AK289521|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##AJ249980|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##BC012802|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##BC022856|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##AK025480|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##NM_001168618|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##NM_020153|IFT46|56912|intraflagellar transport 46 homolog (Chlamydomonas)##AK075437|TMEM25|84866|transmembrane protein 25##AK293670|TMEM25|84866|transmembrane protein 25##AK027305|TMEM25|84866|transmembrane protein 25##AK056325|TMEM25|84866|transmembrane protein 25##AK096260|TMEM25|84866|transmembrane protein 25##AK124814|TMEM25|84866|transmembrane protein 25##AK225415|TMEM25|84866|transmembrane protein 25##AK292359|TMEM25|84866|transmembrane protein 25##AK297255|TMEM25|84866|transmembrane protein 25##AY358919|TMEM25|84866|transmembrane protein 25##BC042896|TMEM25|84866|transmembrane protein 25##BC051841|TMEM25|84866|transmembrane protein 25##NM_001144034|TMEM25|84866|transmembrane protein 25##NM_001144035|TMEM25|84866|transmembrane protein 25##NM_001144036|TMEM25|84866|transmembrane protein 25##NM_001144037|TMEM25|84866|transmembrane protein 25##NM_001144038|TMEM25|84866|transmembrane protein 25##NM_032780|TMEM25|84866|transmembrane protein 25##NM_001142281|ARCN1|372|archain 1##NM_001655|ARCN1|372|archain 1##AK304019|ARCN1|372|archain 1##AK312298|ARCN1|372|archain 1##BC064936|ARCN1|372|archain 1##BX640860|ARCN1|372|archain 1##X81197|ARCN1|372|archain 1##BC080638|ARCN1|372|archain 1##BC093636|ARCN1|372|archain 1##BC093638|ARCN1|372|archain 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1	0.998861	0.0	denovo_WM_7:-85:0.314	denovo_WM_7:-86:0.314	denovo_WM_7:-87:0.314
chr20	31260392	31260522	reg1008825.p2	5.546	+	BC105014 BC105042 AK091025 AX746738 NM_182584	-20787	-	BC023657 BC065483 TSC_hg19_v1_chr20_-_31172902	-87534	-	BC038088 TSC_hg19_v1_chr20_-_31071385	-189066	-	AY542162 TSC_hg19_v1_chr20_-_31331262 BC000628 AK097059 AK027893	70796	-	BC047440 TSC_hg19_v1_chr20_-_31331396	70928	-	AK096307 BC022073 NM_001099339 NM_053041	71350	-	BC105014|C20orf203|284805|chromosome 20 open reading frame 203##BC105042|C20orf203|284805|chromosome 20 open reading frame 203##AK091025|C20orf203|284805|chromosome 20 open reading frame 203##NM_182584|C20orf203|284805|chromosome 20 open reading frame 203##BC023657|LOC284804|284804|uncharacterized LOC284804##BC065483|LOC284804|284804|uncharacterized LOC284804##BC038088|C20orf112|140688|chromosome 20 open reading frame 112##AY542162|COMMD7|149951|COMM domain containing 7##BC000628|COMMD7|149951|COMM domain containing 7##AK097059|COMMD7|149951|COMM domain containing 7##AK027893|COMMD7|149951|COMM domain containing 7##BC047440|COMMD7|149951|COMM domain containing 7##AK096307|COMMD7|149951|COMM domain containing 7##BC022073|COMMD7|149951|COMM domain containing 7##NM_001099339|COMMD7|149951|COMM domain containing 7##NM_053041|COMMD7|149951|COMM domain containing 7	0.989154	0.0	denovo_WM_7:-73:0.953
chr8	119001847	119001974	reg1008057.p1	5.546	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-468868	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-468952	+	NM_001172814 NM_173851	-854574	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	122051	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	632215	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	632297	-	BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12	0.0	0.0	
chr9	130676697	130676836	reg1009161.p2	5.546	+	TSC_hg19_v1_chr9_-_130667604 AY358672 AK124217 AK310850	-9151	-	TSC_hg19_v1_chr9_-_130661892 BC036102	-14856	-	TSC_hg19_v1_chr9_-_130661883 AK023900	-14887	-	BC036705 TSC_hg19_v1_chr9_-_130679297 AK292049 AK000600 NM_175039 NM_175040	2494	-	TSC_hg19_v1_chr9_-_130689700 BC042184 NM_173492	12967	-	NM_001135219	16309	-	AY358672|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK124217|LOC100131355|100131355|uncharacterized LOC100131355##AK310850|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036102|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK023900|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036705|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK292049|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK000600|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175039|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175040|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##BC042184|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_173492|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_001135219|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1	2.977449	0.0	denovo_WM_7:11:0.835	denovo_WM_7:26:0.695	denovo_WM_7:27:0.268	denovo_WM_7:-83:0.331	denovo_WM_7:-84:0.331	denovo_WM_7:-85:0.331
chrX	78213218	78213385	reg1007427.p1	5.546	+	NM_014499 NM_198333 AK313218 AK292138 BC051875	-12429	+	NM_005296 AK314134	-210093	+	AK096184 NM_152694	-298477	-	AF345567 BC104922 BC104924 NM_032553	213167	+	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	409482	-	AK313154 NM_001171581 NM_004867	409726	-	NM_014499|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_198333|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK313218|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK292138|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##BC051875|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_005296|LPAR4|2846|lysophosphatidic acid receptor 4##AK314134|LPAR4|2846|lysophosphatidic acid receptor 4##AK096184|ZCCHC5|203430|zinc finger, CCHC domain containing 5##NM_152694|ZCCHC5|203430|zinc finger, CCHC domain containing 5##AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A##AK313154|ITM2A|9452|integral membrane protein 2A##NM_001171581|ITM2A|9452|integral membrane protein 2A##NM_004867|ITM2A|9452|integral membrane protein 2A	0.85138	0.0	denovo_WM_7:-12:0.635
chr14	77411739	77411895	reg1005099.p1	5.545	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-119022	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-132555	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-132607	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	82867	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	83243	-	AK124327 TSC_hg19_v1_chr14_-_77542533	130716	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.758803	0.0	denovo_WM_7:-48:0.206	denovo_WM_7:-50:0.482
chr12	58244701	58244837	reg1008667.p1	5.544	+	NM_005730	-4023	-	AK291289 TSC_hg19_v1_chr12_-_58240508 AK312413 AK311070 AF000152	-4257	-	TSC_hg19_v1_chr12_-_58240486 BC018922 AK310183	-4290	-	TSC_hg19_v1_chr12_+_58335326 BC033881 AF078164	90567	+	BC012776 NM_033276 BC115381 BC115382 TSC_hg19_v1_chr12_+_58335454	90691	+	AK301162 AY358295 NM_001136051	1068546	-	NM_005730|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK291289|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK312413|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AF000152|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##BC018922|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK310183|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##BC033881|XRCC6BP1|91419|XRCC6 binding protein 1##AF078164|XRCC6BP1|91419|XRCC6 binding protein 1##BC012776|XRCC6BP1|91419|XRCC6 binding protein 1##NM_033276|XRCC6BP1|91419|XRCC6 binding protein 1##BC115381|XRCC6BP1|91419|XRCC6 binding protein 1##BC115382|XRCC6BP1|91419|XRCC6 binding protein 1##AK301162|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY358295|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##NM_001136051|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3	0.056445	0.0	
chr19	1259075	1259205	reg1006358.p2	5.544	+	TSC_hg19_v1_chr19_+_1249886 BC060848 BC094778	-9256	+	TSC_hg19_v1_chr19_+_1248581 NM_177401	-10566	+	TSC_hg19_v1_chr19_+_1241811 BC050458 BC018079 CR542218	-17307	+	TSC_hg19_v1_chr19_+_1269330 NM_001280 AK095781 AK304185 AK304470 AK311601 AK128423 AF021336 AK094781 D78134 BC000901 BC000403	10165	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	11809	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	16427	+	BC060848|MIDN|90007|midnolin##BC094778|MIDN|90007|midnolin##NM_177401|MIDN|90007|midnolin##BC050458|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC018079|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##CR542218|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##NM_001280|CIRBP|1153|cold inducible RNA binding protein##AK095781|CIRBP|1153|cold inducible RNA binding protein##AK304185|CIRBP|1153|cold inducible RNA binding protein##AK304470|CIRBP|1153|cold inducible RNA binding protein##AK311601|CIRBP|1153|cold inducible RNA binding protein##AK128423|CIRBP|1153|cold inducible RNA binding protein##AF021336|CIRBP|1153|cold inducible RNA binding protein##AK094781|CIRBP|1153|cold inducible RNA binding protein##D78134|CIRBP|1153|cold inducible RNA binding protein##BC000901|CIRBP|1153|cold inducible RNA binding protein##BC000403|CIRBP|1153|cold inducible RNA binding protein##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24	0.996934	0.0	denovo_WM_7:-52:0.919
chr16	29673915	29674056	reg1007174.p1	5.543	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	-48943	-	TSC_hg19_v1_chr16_-_29606667 AK316536	-67312	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-67640	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	347	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	580	+	TSC_hg19_v1_chr16_+_29674568 J04168 J04536 NM_003123	588	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin##J04536|SPN|6693|sialophorin##NM_003123|SPN|6693|sialophorin	0.999707	0.0	denovo_WM_7:-39:0.721
chr3	185060719	185060865	reg1009072.p1	5.543	+	AK302951 TSC_hg19_v1_chr3_+_185046682 BC031677	-14101	+	TSC_hg19_v1_chr3_+_185000783 NM_001242314 NM_001242317 AK297646 BC036593 AK312714 BC015996	-60043	+	BC038948 BC110460 L07077 AK301521 TSC_hg19_v1_chr3_-_184971838 AK223460 AK291798 BC011030 BC030982 NM_001166415 NM_001966	-88942	-	BC026249 NM_004721 AK296961 AB001872 BC111726	20140	+	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	155907	-	CU687970 TSC_hg19_v1_chr3_-_185270374 AK298380 AY036912 AY093498 EF186228 EF186229 BC064941 AK122651 NM_139248	209536	-	AK302951|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC031677|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_001242314|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##NM_001242317|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK297646|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC036593|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK312714|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC015996|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC038948|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC110460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##L07077|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK301521|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK223460|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##AK291798|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC011030|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##BC030982|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001166415|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_001966|EHHADH|1962|enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A##AK298380|LIPH|200879|lipase, member H##AY036912|LIPH|200879|lipase, member H##AY093498|LIPH|200879|lipase, member H##EF186228|LIPH|200879|lipase, member H##EF186229|LIPH|200879|lipase, member H##BC064941|LIPH|200879|lipase, member H##AK122651|LIPH|200879|lipase, member H##NM_139248|LIPH|200879|lipase, member H	0.926258	0.0	denovo_WM_7:-17:0.648
chr1	23991890	23991999	reg1009020.p2	5.542	+	NM_002167 X69111	-105660	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-105960	-	L22846 NM_004091	-134233	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	26336	+	TSC_hg19_v1_chr1_+_24018295 BC018970	26355	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	77960	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	1.769598	0.020806	denovo_WM_7:0:0.703	denovo_WM_7:17:0.234	denovo_WM_7:18:0.239	denovo_WM_7:19:0.240	denovo_WM_7:20:0.241
chr5	169331117	169331289	reg1008023.p2	5.542	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-266903	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-266959	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-320482	+	AK055998 NM_001129891	76540	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	201768	+	BC030767 NM_001102609 BC092511	328793	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.999494	0.0	
chr21	30449051	30449137	reg1007485.p1	5.541	+	AK308063 TSC_hg19_v1_chr21_-_30445995 AK298801 BC072001 BC005220 NM_006585	-3105	-	TSC_hg19_v1_chr21_-_30445966 BC012584 BC095470	-3137	-	AB590043 BC035472 TSC_hg19_v1_chr21_-_30445937 AK222490 D13627	-3164	-	AY171599 NM_020152	3778	+	TSC_hg19_v1_chr21_+_30517918 AK309998 EF219160	68816	+	TSC_hg19_v1_chr21_+_30671158 AK291021 AB002803	222070	+	AK308063|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK298801|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC072001|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC005220|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##NM_006585|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC012584|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC095470|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC035472|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK222490|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##D13627|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AY171599|C21orf7|56911|chromosome 21 open reading frame 7##NM_020152|C21orf7|56911|chromosome 21 open reading frame 7##AK309998|C21orf7|56911|chromosome 21 open reading frame 7##EF219160|C21orf7|56911|chromosome 21 open reading frame 7##AK291021|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AB002803|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1	0.442236	0.0	denovo_WM_7:-19:0.397
chr5	124342207	124342342	reg1002817.p3	5.541	+	BC131507 AB033107 BC151226 NM_020747	-261486	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1494392	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1583130	-	NM_001146319 AK316288 AK300154	1353540	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1416569	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1416913	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr6	128201671	128201813	reg1006551.p1	5.541	+	AK303850 BC062712 NM_001010905	-303424	+	NM_001012279	-361243	-	NM_014702	-421208	-	AK292046 AK097903 BC144034 BC130516 NM_001010923 NM_001164685	20458	-	AK124031 NM_001164687	38016	-	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	639914	-	AK303850|C6orf58|352999|chromosome 6 open reading frame 58##BC062712|C6orf58|352999|chromosome 6 open reading frame 58##NM_001010905|C6orf58|352999|chromosome 6 open reading frame 58##NM_001012279|C6orf174|387104|chromosome 6 open reading frame 174##NM_014702|KIAA0408|9729|KIAA0408##AK292046|THEMIS|387357|thymocyte selection associated##AK097903|THEMIS|387357|thymocyte selection associated##BC144034|THEMIS|387357|thymocyte selection associated##BC130516|THEMIS|387357|thymocyte selection associated##NM_001010923|THEMIS|387357|thymocyte selection associated##NM_001164685|THEMIS|387357|thymocyte selection associated##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K	1.98085	0.0	denovo_WM_7:-15:0.298	denovo_WM_7:-16:0.298	denovo_WM_7:-17:0.298	denovo_WM_7:-79:0.953
chr16	75683400	75683559	reg1009045.p2	5.540	+	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	-1772	+	BC013246 CU678582 DQ892301 DQ895500 TSC_hg19_v1_chr16_-_75681564 BC004132 D31890 AF285758 AK126584 D32053 AK315687 NM_001130089 NM_005548	-1918	-	AK001687 AK314652 TSC_hg19_v1_chr16_-_75657163 BC002758 AK296834 NM_012091	-26293	-	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	627761	+	NM_138994 AK057327 BC017266	660276	+	TSC_hg19_v1_chr16_+_77224857 BC024277 NM_014940	1541363	+	AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC013246|KARS|3735|lysyl-tRNA synthetase##DQ892301|KARS|3735|lysyl-tRNA synthetase##DQ895500|KARS|3735|lysyl-tRNA synthetase##BC004132|KARS|3735|lysyl-tRNA synthetase##D31890|KARS|3735|lysyl-tRNA synthetase##AF285758|KARS|3735|lysyl-tRNA synthetase##AK126584|KARS|3735|lysyl-tRNA synthetase##D32053|KARS|3735|lysyl-tRNA synthetase##AK315687|KARS|3735|lysyl-tRNA synthetase##NM_001130089|KARS|3735|lysyl-tRNA synthetase##NM_005548|KARS|3735|lysyl-tRNA synthetase##AK001687|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK314652|ADAT1|23536|adenosine deaminase, tRNA-specific 1##BC002758|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK296834|ADAT1|23536|adenosine deaminase, tRNA-specific 1##NM_012091|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4##NM_138994|CNTNAP4|85445|contactin associated protein-like 4##AK057327|CNTNAP4|85445|contactin associated protein-like 4##BC017266|CNTNAP4|85445|contactin associated protein-like 4##BC024277|MON1B|22879|MON1 homolog B (yeast)##NM_014940|MON1B|22879|MON1 homolog B (yeast)	0.997175	0.0	denovo_WM_7:-29:0.976
chr19	28816282	28816423	reg1006199.p1	5.540	+	TSC_hg19_v1_chr19_+_28284946 AK095009	-531424	+	TSC_hg19_v1_chr19_-_28284831 AK311452	-531519	-	TSC_hg19_v1_chr19_+_28284377 BC024732	-531964	+	TSC_hg19_v1_chr19_-_29704059 DQ891841 BC000649 BC067832 BC010035 BC021057 AK291134	887708	-	TSC_hg19_v1_chr19_-_29704107 NM_006003	887769	-	NM_001146339	1201138	+	AK311452|LOC148189|148189|uncharacterized LOC148189##DQ891841|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC000649|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC067832|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##BC010035|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##AK291134|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_006003|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_001146339|VSTM2B|342865|V-set and transmembrane domain containing 2B	1.99073	0.965181	denovo_WM_7:-6:0.208	denovo_WM_7:-28:0.209	CTCF.p2:87:0.965
chr20	47541062	47541182	reg1007096.p2	5.540	+	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	-2804	+	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	-96683	-	AB037836 TSC_hg19_v1_chr20_-_47444291	-96836	-	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	121704	+	TSC_hg19_v1_chr20_+_47662875 AF053640	121766	+	TSC_hg19_v1_chr20_-_47804876 AK292859 BC001893 BC010169 AY529074 AK291487 BC007532 AK057739 AK025519 BC095397 AL136601	263664	-	BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK292859|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC001893|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC010169|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY529074|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK291487|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC007532|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK057739|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK025519|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC095397|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AL136601|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)	0.998675	0.0	
chr13	52395765	52395943	reg1006701.p1	5.539	+	BC026024 BC009825 NM_001031719 TSC_hg19_v1_chr13_-_52378300 AK023701 NM_024705	-17579	-	TSC_hg19_v1_chr13_+_52158648 AF411978 CU680736	-237119	+	TSC_hg19_v1_chr13_+_52158639 BC014004	-237213	+	AK098719 NM_031290 AK225745 AL136887 BC069691 BC069748 BC069770 BC069806	40340	+	DQ015922 U03464 BC143974 BC143973 BC117200 BC143975 BC143976 NM_000053 NM_001005918 NM_001243182 U11700	189696	-	TSC_hg19_v1_chr13_+_52586546 NM_001004127 BC142998 AK296747 AK092428 AX747540 BC108677 BC111022 AK025456 BC143059 BC150316	190681	+	BC026024|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##BC009825|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001031719|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK023701|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_024705|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AF411978|WDFY2|115825|WD repeat and FYVE domain containing 2##BC014004|WDFY2|115825|WD repeat and FYVE domain containing 2##AK098719|CCDC70|83446|coiled-coil domain containing 70##NM_031290|CCDC70|83446|coiled-coil domain containing 70##AK225745|CCDC70|83446|coiled-coil domain containing 70##AL136887|CCDC70|83446|coiled-coil domain containing 70##BC069691|CCDC70|83446|coiled-coil domain containing 70##BC069748|CCDC70|83446|coiled-coil domain containing 70##BC069770|CCDC70|83446|coiled-coil domain containing 70##BC069806|CCDC70|83446|coiled-coil domain containing 70##DQ015922|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U03464|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143974|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143973|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC117200|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143975|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143976|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_000053|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001005918|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001243182|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U11700|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001004127|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC142998|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK296747|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC108677|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC111022|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK025456|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC143059|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC150316|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)	1.974707	0.0	denovo_WM_7:-20:0.314	denovo_WM_7:-21:0.330	denovo_WM_7:-39:0.219	denovo_WM_7:-40:0.220	denovo_WM_7:-41:0.226
chr5	36415063	36415171	reg1005265.p1	5.539	+	BC017951 AK058151 AK302947 TSC_hg19_v1_chr5_-_36302002 BC047660 NM_001161429 NM_145000	-113113	-	BC062567 NM_153013 AK304009	-172806	-	NM_001085411 TSC_hg19_v1_chr5_-_36241996	-173129	-	NM_001166696 NM_004172	191339	+	TSC_hg19_v1_chr5_+_36606718 AK312304 BC037310 AK057823 AK293886 BC022285 BC054475 AK295032 AK295754 D26443 L19158	191611	+	NM_001166695 U03504 AB529121 AY954110 TSC_hg19_v1_chr5_+_36608562	193379	+	BC017951|RANBP3L|202151|RAN binding protein 3-like##AK058151|RANBP3L|202151|RAN binding protein 3-like##AK302947|RANBP3L|202151|RAN binding protein 3-like##BC047660|RANBP3L|202151|RAN binding protein 3-like##NM_001161429|RANBP3L|202151|RAN binding protein 3-like##NM_145000|RANBP3L|202151|RAN binding protein 3-like##BC062567|NADKD1|133686|NAD kinase domain containing 1##NM_153013|NADKD1|133686|NAD kinase domain containing 1##AK304009|NADKD1|133686|NAD kinase domain containing 1##NM_001085411|NADKD1|133686|NAD kinase domain containing 1##NM_001166696|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##NM_004172|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK312304|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##BC037310|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK057823|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK293886|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##BC022285|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##BC054475|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK295032|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AK295754|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##D26443|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##L19158|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##NM_001166695|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##U03504|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3##AY954110|SLC1A3|6507|solute carrier family 1 (glial high affinity glutamate transporter), member 3	0.995501	0.010195	denovo_WM_7:8:0.324	denovo_WM_7:9:0.324	denovo_WM_7:10:0.324
chr9	136241707	136241876	reg1005779.p2	5.539	+	TSC_hg19_v1_chr9_+_136223420 NM_017503 BC014411 Z35094 DQ892595 DQ895819 CR456753	-18343	+	Z35093 TSC_hg19_v1_chr9_-_136223345 AK291122 BC028314 BC071658 NM_003172	-18437	-	CU687126 DQ890823 DQ893977 TSC_hg19_v1_chr9_-_136223336	-18458	-	Y14820 CU676306 AM392907 DQ892024 DQ895216 AB528538 BC018741 AK293434 BX647961 TSC_hg19_v1_chr9_-_136242890 BC111023	1073	-	TSC_hg19_v1_chr9_-_136242925 AK300004 AK299656 AK303309 AK316480	1137	-	AK295435 TSC_hg19_v1_chr9_-_136242933	1142	-	NM_017503|SURF2|6835|surfeit 2##BC014411|SURF2|6835|surfeit 2##Z35094|SURF2|6835|surfeit 2##DQ892595|SURF2|6835|surfeit 2##DQ895819|SURF2|6835|surfeit 2##CR456753|SURF2|6835|surfeit 2##Z35093|SURF1|6834|surfeit 1##AK291122|SURF1|6834|surfeit 1##BC028314|SURF1|6834|surfeit 1##BC071658|SURF1|6834|surfeit 1##NM_003172|SURF1|6834|surfeit 1##DQ890823|SURF1|6834|surfeit 1##DQ893977|SURF1|6834|surfeit 1##Y14820|SURF4|6836|surfeit 4##AM392907|SURF4|6836|surfeit 4##DQ892024|SURF4|6836|surfeit 4##DQ895216|SURF4|6836|surfeit 4##BC018741|SURF4|6836|surfeit 4##AK293434|SURF4|6836|surfeit 4##BX647961|SURF4|6836|surfeit 4##BC111023|SURF4|6836|surfeit 4##AK300004|SURF4|6836|surfeit 4##AK299656|SURF4|6836|surfeit 4##AK303309|SURF4|6836|surfeit 4##AK316480|SURF4|6836|surfeit 4##AK295435|SURF4|6836|surfeit 4	0.0	0.0	
chr16	80380280	80380384	reg1006401.p1	5.538	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-745717	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-2246877	+	NM_001244755	-2317347	+	AF125108 NM_130897 BC054892 BC035232	194556	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	457715	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	659752	+	AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N	0.991743	0.0	denovo_WM_7:-24:0.331	denovo_WM_7:-25:0.331	denovo_WM_7:-26:0.331
chr1	14027887	14028001	reg1006518.p1	5.537	+	TSC_hg19_v1_chr1_+_14026688 BC014468 NM_001135610	-1220	+	NM_001006624 NM_001006625	-115978	+	NM_006474 NM_198389 BC014668 BC022812 TSC_hg19_v1_chr1_+_13910326 AY194238 AK075327 AK075345 AK312607 AF390106 AF030428 AJ225022 AB127958	-117555	+	NM_012231 NM_015866 U17838	3405	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	47941	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	47979	+	BC014468|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001135610|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001006624|PDPN|10630|podoplanin##NM_001006625|PDPN|10630|podoplanin##NM_006474|PDPN|10630|podoplanin##NM_198389|PDPN|10630|podoplanin##BC014668|PDPN|10630|podoplanin##BC022812|PDPN|10630|podoplanin##AY194238|PDPN|10630|podoplanin##AK075327|PDPN|10630|podoplanin##AK075345|PDPN|10630|podoplanin##AK312607|PDPN|10630|podoplanin##AF390106|PDPN|10630|podoplanin##AF030428|PDPN|10630|podoplanin##AJ225022|PDPN|10630|podoplanin##AB127958|PDPN|10630|podoplanin##NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain##U17838|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain	0.0	0.0	
chr12	12587151	12587318	reg1009517.p2	5.537	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-77069	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-84062	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-167392	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	128166	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	177561	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	177649	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.999644	0.0	
chr22	42318176	42318302	reg1004910.p2	5.537	+	NM_001207020	-7569	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-88968	+	TSC_hg19_v1_chr22_+_42229253 BC056158 U02031 BC051385 CT841522 AK299914	-89038	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	4560	-	EU035297 NM_001110215	17983	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	24884	-	NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC056158|SREBF2|6721|sterol regulatory element binding transcription factor 2##U02031|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051385|SREBF2|6721|sterol regulatory element binding transcription factor 2##CT841522|SREBF2|6721|sterol regulatory element binding transcription factor 2##AK299914|SREBF2|6721|sterol regulatory element binding transcription factor 2##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M	0.0	0.0	
chr10	88171964	88172144	reg1009140.p1	5.536	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-45791	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-1987359	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2040436	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	109440	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	109476	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	242340	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	1.229099	0.0	denovo_WM_7:-33:0.424	denovo_WM_7:-34:0.424
chr19	14152438	14152544	reg1007224.p1	5.536	+	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-9844	+	AF265242 AY358876 TSC_hg19_v1_chr19_+_14142572	-9906	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	-9977	+	NM_001145028	17479	-	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	48785	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	72563	-	BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF265242|IL27RA|9466|interleukin 27 receptor, alpha##AY358876|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha##NM_001145028|PALM3|342979|paralemmin 3##AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.0	0.0	
chr19	49078166	49078346	reg1005337.p1	5.536	+	TSC_hg19_v1_chr19_+_49055432 NM_177973 U92315 BC034694 CU689942	-22792	+	AB067470 NM_001080434	-61825	-	AB384647 TSC_hg19_v1_chr19_-_49014849	-63416	-	NM_004605	736	+	AF353721 NM_133498 AY358387 BC047334	31753	+	BC111970 BC111972 NM_017708 AK000207	38499	-	NM_177973|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##U92315|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##BC034694|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##AB067470|LMTK3|114783|lemur tyrosine kinase 3##NM_001080434|LMTK3|114783|lemur tyrosine kinase 3##NM_004605|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##AF353721|SPACA4|171169|sperm acrosome associated 4##NM_133498|SPACA4|171169|sperm acrosome associated 4##AY358387|SPACA4|171169|sperm acrosome associated 4##BC047334|SPACA4|171169|sperm acrosome associated 4##BC111970|FAM83E|54854|family with sequence similarity 83, member E##BC111972|FAM83E|54854|family with sequence similarity 83, member E##NM_017708|FAM83E|54854|family with sequence similarity 83, member E##AK000207|FAM83E|54854|family with sequence similarity 83, member E	0.01313	0.0	
chr21	33020052	33020220	reg1007342.p2	5.536	+	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	-88778	-	AB096964 NM_001099219	-609342	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-766278	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	11871	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	53982	-	AL834304 BC052286 BC064990 TSC_hg19_v1_chr21_-_33104271 AK057840 AK308406	84136	-	NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4##AL834304|SCAF4|57466|SR-related CTD-associated factor 4##BC052286|SCAF4|57466|SR-related CTD-associated factor 4##BC064990|SCAF4|57466|SR-related CTD-associated factor 4##AK057840|SCAF4|57466|SR-related CTD-associated factor 4##AK308406|SCAF4|57466|SR-related CTD-associated factor 4	0.0	0.0	
chr3	184016718	184016827	reg1008287.p1	5.536	+	BC142950 NM_001037324 NM_001100120 NM_001100121 TSC_hg19_v1_chr3_+_183993819 AB011176 AK296541 AF521189 AY359003 AF192531 AF428264 AK293713 BC146830 AB383918	-22904	+	TSC_hg19_v1_chr3_-_183979153 BC105077 BC105079 AY037149 NM_033259	-37496	-	TSC_hg19_v1_chr3_+_183967514 AF428263	-49255	+	TSC_hg19_v1_chr3_+_184017028 D78151 NM_002808 AL162014 AK315474 AK297256 BC002997	238	+	TSC_hg19_v1_chr3_+_184017038 AB209843 BC002368 AB385107 BC007897 BT009736 X86446 U12596 CU675853	324	+	TSC_hg19_v1_chr3_+_184032303 NM_001194946 NM_001194947 NM_198241 NM_198242 NM_198244	15507	+	BC142950|ECE2|9718|endothelin converting enzyme 2##NM_001037324|ECE2|9718|endothelin converting enzyme 2##NM_001100120|ECE2|9718|endothelin converting enzyme 2##NM_001100121|ECE2|9718|endothelin converting enzyme 2##AB011176|ECE2|9718|endothelin converting enzyme 2##AK296541|ECE2|9718|endothelin converting enzyme 2##AF521189|ECE2|9718|endothelin converting enzyme 2##AY359003|ECE2|9718|endothelin converting enzyme 2##AF192531|ECE2|9718|endothelin converting enzyme 2##AF428264|ECE2|9718|endothelin converting enzyme 2##AK293713|ECE2|9718|endothelin converting enzyme 2##BC146830|ECE2|9718|endothelin converting enzyme 2##BC105077|CAMK2N2|94032|calcium/calmodulin-dependent protein kinase II inhibitor 2##BC105079|CAMK2N2|94032|calcium/calmodulin-dependent protein kinase II inhibitor 2##AY037149|CAMK2N2|94032|calcium/calmodulin-dependent protein kinase II inhibitor 2##NM_033259|CAMK2N2|94032|calcium/calmodulin-dependent protein kinase II inhibitor 2##AF428263|ECE2|9718|endothelin converting enzyme 2##D78151|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##NM_002808|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AL162014|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AK315474|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AK297256|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC002997|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AB209843|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC002368|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC007897|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BT009736|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##X86446|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##U12596|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##NM_001194946|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_001194947|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_198241|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_198242|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_198244|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1	0.0	0.0	
chrX	109266594	109266762	reg1005436.p2	5.536	+	TSC_hg19_v1_chrX_+_109246360 BC085605	-20323	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	-20338	+	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	-20808	+	CU687440 TSC_hg19_v1_chrX_-_109561311 AK314596 BC060813	294627	-	TSC_hg19_v1_chrX_-_109561314 BX648797 NM_001025580 NM_015365	294668	-	TSC_hg19_v1_chrX_-_109561428 AJ007014	294768	-	BC085605|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##AK314596|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BC060813|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BX648797|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_001025580|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_015365|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##AJ007014|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	0.0	0.0	
chr19	10339754	10339899	reg1005880.p2	5.535	+	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-34099	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-34221	-	AB209413 TSC_hg19_v1_chr19_-_10305579	-34269	-	NM_004230 TSC_hg19_v1_chr19_-_10342058	2180	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	22821	+	TSC_hg19_v1_chr19_+_10362889 BC009858	23072	+	BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AB209413|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chr2	203134435	203134531	reg1009007.p1	5.535	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	-3911	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	-4027	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	-31215	-	TSC_hg19_v1_chr2_+_203241049 NM_001204	106563	+	TSC_hg19_v1_chr2_+_203499703 AK096090	365206	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	365376	+	BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)##AK096090|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B	0.975237	0.0	denovo_WM_7:-2:0.310	denovo_WM_7:-10:0.310
chr3	45079269	45079396	reg1008845.p1	5.535	+	AK312093 NM_003278 X64559 TSC_hg19_v1_chr3_+_45067794 BC011024 CU679874 CR541981 CR542009	-11530	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	-61572	+	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	-61595	+	AB527383 CU676820 TSC_hg19_v1_chr3_-_45187791	108454	-	TSC_hg19_v1_chr3_-_45187849 AY375452 AY026461	108519	-	TSC_hg19_v1_chr3_-_45187871 BC069254 AY167484 AY358779 AK314441 AF468010 AK026622	108543	-	AK312093|CLEC3B|7123|C-type lectin domain family 3, member B##NM_003278|CLEC3B|7123|C-type lectin domain family 3, member B##X64559|CLEC3B|7123|C-type lectin domain family 3, member B##BC011024|CLEC3B|7123|C-type lectin domain family 3, member B##CR541981|CLEC3B|7123|C-type lectin domain family 3, member B##CR542009|CLEC3B|7123|C-type lectin domain family 3, member B##BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##AY375452|CDCP1|64866|CUB domain containing protein 1##AY026461|CDCP1|64866|CUB domain containing protein 1##BC069254|CDCP1|64866|CUB domain containing protein 1##AY167484|CDCP1|64866|CUB domain containing protein 1##AY358779|CDCP1|64866|CUB domain containing protein 1##AK314441|CDCP1|64866|CUB domain containing protein 1##AF468010|CDCP1|64866|CUB domain containing protein 1##AK026622|CDCP1|64866|CUB domain containing protein 1	0.0	1.645613	CTCF.p2:-11:0.988	CTCF.p2:83:0.658
chr7	22925396	22925576	reg1006704.p1	5.535	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-63043	-	TSC_hg19_v1_chr7_+_22767104 X04403	-158368	+	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	-158663	+	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	128209	-	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	128264	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	219886	+	CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)	1.034856	0.0	
chr8	25324553	25324715	reg1002273.p1	5.535	+	TSC_hg19_v1_chr8_+_25316748 AK299278 AL833627 BC015691 BC104450 BC104451	-7800	+	AK292505 TSC_hg19_v1_chr8_+_25316724	-7912	+	NM_152562	-8122	+	BC137106 BC137107 NM_022659 TSC_hg19_v1_chr8_-_25902675 AK001144	578032	-	TSC_hg19_v1_chr8_+_26149035 NM_002717	824387	+	AK314823 TSC_hg19_v1_chr8_+_26149043 BC041071	824415	+	AK299278|CDCA2|157313|cell division cycle associated 2##AL833627|CDCA2|157313|cell division cycle associated 2##BC015691|CDCA2|157313|cell division cycle associated 2##BC104450|CDCA2|157313|cell division cycle associated 2##BC104451|CDCA2|157313|cell division cycle associated 2##AK292505|CDCA2|157313|cell division cycle associated 2##NM_152562|CDCA2|157313|cell division cycle associated 2##BC137106|EBF2|64641|early B-cell factor 2##BC137107|EBF2|64641|early B-cell factor 2##NM_022659|EBF2|64641|early B-cell factor 2##AK001144|EBF2|64641|early B-cell factor 2##NM_002717|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AK314823|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC041071|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha	1.205964	0.0	
chr10	94004746	94004868	reg1006506.p1	5.534	+	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-1788	-	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-321115	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-321291	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	46029	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	46247	+	AK302578 AK093287 AK316407 AX748033 NM_001165946	252686	-	AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme	1.244918	0.0	denovo_WM_7:61:0.250
chr20	52353463	52353643	reg1008190.p1	5.534	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-142754	-	AF041259 NM_006526	-153918	-	AK302570 NM_001193421	-551732	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	333509	-	AK315220 NM_003657	333750	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	436967	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr18	37732967	37733116	reg1007252.p1	5.533	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-352773	-	TSC_hg19_v1_chr18_-_36915657 D28405	-817385	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-2587042	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	1802158	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	1802192	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	2962528	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	1.991441	0.0	denovo_WM_7:19:0.611	denovo_WM_7:20:0.332	denovo_WM_7:34:0.281	denovo_WM_7:35:0.560
chr9	130663236	130663371	reg1005120.p1	5.533	+	TSC_hg19_v1_chr9_-_130661892 BC036102	-1393	-	TSC_hg19_v1_chr9_-_130661883 AK023900	-1424	-	TSC_hg19_v1_chr9_-_130661867 BC006564 BC007802 BC016299 NM_013443	-1456	-	TSC_hg19_v1_chr9_-_130667604 AY358672 AK124217 AK310850	4312	-	BC036705 TSC_hg19_v1_chr9_-_130679297 AK292049 AK000600 NM_175039 NM_175040	15957	-	TSC_hg19_v1_chr9_-_130689700 BC042184 NM_173492	26430	-	BC036102|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK023900|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC006564|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC007802|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC016299|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##NM_013443|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AY358672|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK124217|LOC100131355|100131355|uncharacterized LOC100131355##AK310850|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036705|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK292049|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK000600|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175039|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175040|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##BC042184|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_173492|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1	1.972317	0.0	denovo_WM_7:-10:0.749	denovo_WM_7:-25:0.769
chr11	65756560	65756740	reg1002499.p1	5.532	+	NM_005146 TSC_hg19_v1_chr11_+_65729203 AK223016 AK293200 AK297589 AK309104 AK298184 BC001058 AB006198 AF353625 DQ891694 EU176645 BT006637 Y14314	-27381	+	AK057442 BC104021 BC104022 BC104023 NM_152762	-43536	+	TSC_hg19_v1_chr11_+_65686920 BC010025 AB463581 CU679579 EU446936 X96506	-69691	+	TSC_hg19_v1_chr11_+_65769409 AF068235 NM_001143985 NM_003860	12829	+	AK094129 TSC_hg19_v1_chr11_-_65769629 BC005131 AK311891 NM_001242481 NM_001242482 NM_001242483 NM_001242484 NM_001242485 NM_001242486 NM_032325	12980	-	TSC_hg19_v1_chr11_+_65769774 BC107702	13169	+	NM_005146|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK223016|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK293200|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK297589|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK298184|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BC001058|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AB006198|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AF353625|SART1|9092|squamous cell carcinoma antigen recognized by T cells##DQ891694|SART1|9092|squamous cell carcinoma antigen recognized by T cells##EU176645|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BT006637|SART1|9092|squamous cell carcinoma antigen recognized by T cells##Y14314|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK057442|TSGA10IP|254187|testis specific, 10 interacting protein##BC104021|TSGA10IP|254187|testis specific, 10 interacting protein##BC104022|TSGA10IP|254187|testis specific, 10 interacting protein##BC104023|TSGA10IP|254187|testis specific, 10 interacting protein##NM_152762|TSGA10IP|254187|testis specific, 10 interacting protein##BC010025|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##EU446936|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##X96506|DRAP1|10589|DR1-associated protein 1 (negative cofactor 2 alpha)##AF068235|BANF1|8815|barrier to autointegration factor 1##NM_001143985|BANF1|8815|barrier to autointegration factor 1##NM_003860|BANF1|8815|barrier to autointegration factor 1##AK094129|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##BC005131|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##AK311891|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242481|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242482|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242483|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242484|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242485|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242486|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_032325|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##BC107702|BANF1|8815|barrier to autointegration factor 1	0.0	0.857865	CTCF.p2:-44:0.824
chr12	122103058	122103178	reg1004710.p2	5.532	+	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-38475	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-84204	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-84859	-	BC057760 NM_173855	4441	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	47626	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	128456	-	BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)	2.841137	0.0	denovo_WM_7:58:0.852	denovo_WM_7:73:0.269	denovo_WM_7:74:0.726	denovo_WM_7:89:0.859
chr17	48906038	48906182	reg1006294.p2	5.532	+	AF147357 TSC_hg19_v1_chr17_+_48821111	-85000	+	TSC_hg19_v1_chr17_+_48796963 NM_006107 NM_016424 AK290540 AK225980 AK023672 BC047043 BC056409 BC002925 AK295983 DQ013876 AK001925	-109117	+	AK314010 CR627413 TSC_hg19_v1_chr17_-_48785180 BC012978 EU164539 NM_052855	-120967	-	NM_175575	6494	+	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	37586	-	AK313904 NM_001243877	39228	-	AF147357|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##NM_006107|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##NM_016424|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK290540|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK225980|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK023672|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC047043|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC056409|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC002925|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK295983|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##DQ013876|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK001925|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK314010|ANKRD40|91369|ankyrin repeat domain 40##CR627413|ANKRD40|91369|ankyrin repeat domain 40##BC012978|ANKRD40|91369|ankyrin repeat domain 40##EU164539|ANKRD40|91369|ankyrin repeat domain 40##NM_052855|ANKRD40|91369|ankyrin repeat domain 40##NM_175575|WFIKKN2|124857|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1	0.0	0.0	
chr1	165655672	165655822	reg1009331.p1	5.531	+	TSC_hg19_v1_chr1_+_165600499 BC005964 DQ185045 AK312103 AF026977 AK223012 BC000505	-55276	+	NM_004528	-55638	+	TSC_hg19_v1_chr1_+_165513441 NM_001005214 BC132981 BC132983	-142275	+	TSC_hg19_v1_chr1_-_165667539 AK302191 AK302183 X75425 U50203	11841	-	AF172093 TSC_hg19_v1_chr1_-_165667800 BC011410 AK301767 AK302654 AK312751 BC070030 AK293520	12031	-	TSC_hg19_v1_chr1_-_165667837 BC151140 BC151141 NM_000696	12120	-	BC005964|MGST3|4259|microsomal glutathione S-transferase 3##DQ185045|MGST3|4259|microsomal glutathione S-transferase 3##AK312103|MGST3|4259|microsomal glutathione S-transferase 3##AF026977|MGST3|4259|microsomal glutathione S-transferase 3##AK223012|MGST3|4259|microsomal glutathione S-transferase 3##BC000505|MGST3|4259|microsomal glutathione S-transferase 3##NM_004528|MGST3|4259|microsomal glutathione S-transferase 3##NM_001005214|LRRC52|440699|leucine rich repeat containing 52##BC132981|LRRC52|440699|leucine rich repeat containing 52##BC132983|LRRC52|440699|leucine rich repeat containing 52##AK302191|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK302183|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##X75425|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##U50203|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AF172093|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC011410|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK301767|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK302654|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK312751|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC070030|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK293520|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC151140|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC151141|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##NM_000696|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1	0.856475	0.0	denovo_WM_7:2:0.807
chr19	17236074	17236212	reg1006168.p1	5.530	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-49550	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-49822	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-98603	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	90029	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	90062	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	100891	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	0.0	0.0	
chr3	48916883	48917011	reg1009244.p1	5.530	+	TSC_hg19_v1_chr3_+_48885386 AK127190	-31558	+	TSC_hg19_v1_chr3_-_48885271 BC002763 NM_004157	-31659	-	X14968 TSC_hg19_v1_chr3_-_48885238 AK293042	-31712	-	CU674836 DQ892599 DQ895828 TSC_hg19_v1_chr3_-_48936320 BC001689 AK312962 AK301744 NM_000387	19384	-	TSC_hg19_v1_chr3_+_48956261 AK223550	39309	+	TSC_hg19_v1_chr3_+_48956280 NM_006321 BC000422	39336	+	BC002763|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##NM_004157|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##X14968|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##AK293042|PRKAR2A|5576|protein kinase, cAMP-dependent, regulatory, type II, alpha##DQ892599|SLC25A20|788|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20##DQ895828|SLC25A20|788|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20##BC001689|SLC25A20|788|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20##AK312962|SLC25A20|788|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20##AK301744|SLC25A20|788|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20##NM_000387|SLC25A20|788|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20##AK223550|ARIH2|10425|ariadne homolog 2 (Drosophila)##NM_006321|ARIH2|10425|ariadne homolog 2 (Drosophila)##BC000422|ARIH2|10425|ariadne homolog 2 (Drosophila)	0.898845	0.0	denovo_WM_7:28:0.899
chr6	26538250	26538424	reg1008418.p1	5.530	+	U39576 BC096312 BC096313 BC096314 BC096315 NM_001732	-36866	+	NM_001197234 NM_007049 NM_078476 TSC_hg19_v1_chr6_+_26458182 AK297098 NM_001197233 BC016661 AB209777 U90543	-80147	+	NM_001242803 NM_006994 NM_197974 AK291722 AK301553 AB209581 BC015815 AK223279 AK223301 U90548	-97598	+	TSC_hg19_v1_chr6_+_26538630 NM_006353 AK311841 BC001282	293	+	TSC_hg19_v1_chr6_+_26597203 NM_013375 BC066313 BC048812 AB027258 AB463399 CU688138 CU690582 EU446795	58870	+	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	121615	-	U39576|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096312|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096313|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096314|BTN1A1|696|butyrophilin, subfamily 1, member A1##BC096315|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001732|BTN1A1|696|butyrophilin, subfamily 1, member A1##NM_001197234|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_007049|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_078476|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AK297098|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001197233|BTN2A1|11120|butyrophilin, subfamily 2, member A1##BC016661|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AB209777|BTN2A1|11120|butyrophilin, subfamily 2, member A1##U90543|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001242803|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_006994|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_197974|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK291722|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK301553|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AB209581|BTN3A3|10384|butyrophilin, subfamily 3, member A3##BC015815|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK223279|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK223301|BTN3A3|10384|butyrophilin, subfamily 3, member A3##U90548|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_006353|HMGN4|10473|high mobility group nucleosomal binding domain 4##AK311841|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC001282|HMGN4|10473|high mobility group nucleosomal binding domain 4##NM_013375|ABT1|29777|activator of basal transcription 1##BC066313|ABT1|29777|activator of basal transcription 1##BC048812|ABT1|29777|activator of basal transcription 1##AB027258|ABT1|29777|activator of basal transcription 1##EU446795|ABT1|29777|activator of basal transcription 1##NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322	0.0	0.0	
chr10	6333746	6333926	reg1008313.p2	5.529	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-88960	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-146924	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-146952	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	288425	-	TSC_hg19_v1_chr10_+_6622460 AY007155	288644	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1117414	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.993017	0.0	
chr12	50794448	50794559	reg1002957.p2	5.528	+	BC054024 AL833333 NM_001145475	-4106	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	-117208	-	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	-178047	-	NM_001170803 NM_001170804 NM_001170808 NM_052879 NM_199188 NM_199190 TSC_hg19_v1_chr12_+_50794671 AL832198 CR936626 AL833272 BC022377 BC063479 AF370416 AK291746 AY004310 AK055521 BX647457 CU687740 EU831655 EU831738 EU831909 EU832003	189	+	TSC_hg19_v1_chr12_+_50869532 AF131755	75084	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	104252	+	BC054024|FAM186A|121006|family with sequence similarity 186, member A##AL833333|FAM186A|121006|family with sequence similarity 186, member A##NM_001145475|FAM186A|121006|family with sequence similarity 186, member A##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1##AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##NM_001170803|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170804|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170808|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_052879|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199188|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199190|LARP4|113251|La ribonucleoprotein domain family, member 4##AL832198|LARP4|113251|La ribonucleoprotein domain family, member 4##CR936626|LARP4|113251|La ribonucleoprotein domain family, member 4##AL833272|LARP4|113251|La ribonucleoprotein domain family, member 4##BC022377|LARP4|113251|La ribonucleoprotein domain family, member 4##BC063479|LARP4|113251|La ribonucleoprotein domain family, member 4##AF370416|LARP4|113251|La ribonucleoprotein domain family, member 4##AK291746|LARP4|113251|La ribonucleoprotein domain family, member 4##AY004310|LARP4|113251|La ribonucleoprotein domain family, member 4##AK055521|LARP4|113251|La ribonucleoprotein domain family, member 4##BX647457|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831655|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831738|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831909|LARP4|113251|La ribonucleoprotein domain family, member 4##EU832003|LARP4|113251|La ribonucleoprotein domain family, member 4##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)	0.0	0.0	
chr3	168582901	168583012	reg1009765.p1	5.528	+	TSC_hg19_v1_chr3_-_167813684 AK307718 AK307557 NM_014498	-769525	-	TSC_hg19_v1_chr3_-_167813072 U55853 BC143232 BC143233 BC171748	-769841	-	NM_001122752 TSC_hg19_v1_chr3_+_167453508 AK290082 BC018043 NM_005025 CR627434 Z81326	-1129467	+	BC130520 BC143951 BC143952 AF164154 AF164155 AF164156 AF164157 NM_001105077 NM_001163999 NM_005241 X54989	281123	-	TSC_hg19_v1_chr3_-_168864325 AK292865 AF487422 NM_001105078	281406	-	BX640908 NM_001164000	282565	-	AK307718|GOLIM4|27333|golgi integral membrane protein 4##AK307557|GOLIM4|27333|golgi integral membrane protein 4##NM_014498|GOLIM4|27333|golgi integral membrane protein 4##U55853|GOLIM4|27333|golgi integral membrane protein 4##BC143232|GOLIM4|27333|golgi integral membrane protein 4##BC143233|GOLIM4|27333|golgi integral membrane protein 4##BC171748|GOLIM4|27333|golgi integral membrane protein 4##NM_001122752|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##AK290082|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC018043|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##NM_005025|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##CR627434|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##Z81326|SERPINI1|5274|serpin peptidase inhibitor, clade I (neuroserpin), member 1##BC130520|MECOM|2122|MDS1 and EVI1 complex locus##BC143951|MECOM|2122|MDS1 and EVI1 complex locus##BC143952|MECOM|2122|MDS1 and EVI1 complex locus##AF164154|MECOM|2122|MDS1 and EVI1 complex locus##AF164155|MECOM|2122|MDS1 and EVI1 complex locus##AF164156|MECOM|2122|MDS1 and EVI1 complex locus##AF164157|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105077|MECOM|2122|MDS1 and EVI1 complex locus##NM_001163999|MECOM|2122|MDS1 and EVI1 complex locus##NM_005241|MECOM|2122|MDS1 and EVI1 complex locus##X54989|MECOM|2122|MDS1 and EVI1 complex locus##AK292865|MECOM|2122|MDS1 and EVI1 complex locus##AF487422|MECOM|2122|MDS1 and EVI1 complex locus##NM_001105078|MECOM|2122|MDS1 and EVI1 complex locus##BX640908|MECOM|2122|MDS1 and EVI1 complex locus##NM_001164000|MECOM|2122|MDS1 and EVI1 complex locus	0.973975	0.127903	denovo_WM_7:16:0.974
chr1	150897665	150897845	reg1008788.p2	5.527	+	TSC_hg19_v1_chr1_-_150849221 BC028362 AK293027 NM_001197325 NM_001668 NM_178427	-48524	-	TSC_hg19_v1_chr1_-_150849187 BC060838 AK290177 AL834279 AK313780	-48578	-	TSC_hg19_v1_chr1_-_150849073 AK315812 AK291705 AF001307 M69238 AK223459	-48669	-	NM_001145415 NM_001243491 NM_012432 TSC_hg19_v1_chr1_+_150898838 AK302461 AK308335 BC028671 D31891 BC009362	1114	+	TSC_hg19_v1_chr1_-_150947141 BC010032	49383	-	AK290989 TSC_hg19_v1_chr1_-_150947185 BC001357	49414	-	BC028362|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK293027|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_001197325|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_001668|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_178427|ARNT|405|aryl hydrocarbon receptor nuclear translocator##BC060838|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK290177|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AL834279|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK313780|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK315812|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK291705|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AF001307|ARNT|405|aryl hydrocarbon receptor nuclear translocator##M69238|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK223459|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_001145415|SETDB1|9869|SET domain, bifurcated 1##NM_001243491|SETDB1|9869|SET domain, bifurcated 1##NM_012432|SETDB1|9869|SET domain, bifurcated 1##AK302461|SETDB1|9869|SET domain, bifurcated 1##AK308335|SETDB1|9869|SET domain, bifurcated 1##BC028671|SETDB1|9869|SET domain, bifurcated 1##D31891|SETDB1|9869|SET domain, bifurcated 1##BC009362|SETDB1|9869|SET domain, bifurcated 1##BC010032|CERS2|29956|ceramide synthase 2##AK290989|CERS2|29956|ceramide synthase 2##BC001357|CERS2|29956|ceramide synthase 2	0.99986	0.0	denovo_WM_7:-5:0.230	denovo_WM_7:-6:0.230	denovo_WM_7:-7:0.230	denovo_WM_7:-8:0.230
chr17	81038422	81038557	reg1009519.p1	5.527	+	TSC_hg19_v1_chr17_+_81037508 BC082252 NM_001004431 BC118558 BC118638	-947	+	TSC_hg19_v1_chr17_-_81009643 AY304503 AY634364 NM_001009905	-28820	-	BC041588 TSC_hg19_v1_chr17_-_81006463 BC019623	-32019	-	None	None	None	None	None	None	None	None	None	BC082252|METRNL|284207|meteorin, glial cell differentiation regulator-like##NM_001004431|METRNL|284207|meteorin, glial cell differentiation regulator-like##BC118558|METRNL|284207|meteorin, glial cell differentiation regulator-like##BC118638|METRNL|284207|meteorin, glial cell differentiation regulator-like##AY304503|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##AY634364|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##NM_001009905|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##BC041588|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##BC019623|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	0.999607	0.0	
chr3	171506606	171506740	reg1008979.p2	5.527	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-328602	-	NM_000340	-761906	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-762140	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	21582	-	NM_001164436 AK026825	54475	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	250742	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	0.0	0.0	
chr6	133079003	133079183	reg1006178.p1	5.527	+	BC064641 AB435062 AB435063 AB435064 AB435065 NM_001242350 HQ258282 HQ258449 AB026705 AJ132100 D89974 NM_004665 AK290908 AK298719 BC126145 BC126147 BC144064	-92	-	U39664 BC096268 AJ132099 BC096265 BC096266 BC096267 TSC_hg19_v1_chr6_-_133035195 AK290425 AK314265 NM_004666	-43905	-	AY180374 NM_138327 BC101825 BC112194	-111940	-	AK292125 NM_078488 TSC_hg19_v1_chr6_-_133084603	5502	-	AK124442 BC069570 AK293853 TSC_hg19_v1_chr6_-_133119740 NM_052831 AK289918	40608	-	TSC_hg19_v1_chr6_+_133135707 AK096147 NM_001016 D28378 X53505	56614	+	BC064641|VNN2|8875|vanin 2##AB435062|VNN2|8875|vanin 2##AB435063|VNN2|8875|vanin 2##AB435064|VNN2|8875|vanin 2##AB435065|VNN2|8875|vanin 2##NM_001242350|VNN2|8875|vanin 2##HQ258282|VNN2|8875|vanin 2##HQ258449|VNN2|8875|vanin 2##AB026705|VNN2|8875|vanin 2##AJ132100|VNN2|8875|vanin 2##D89974|VNN2|8875|vanin 2##NM_004665|VNN2|8875|vanin 2##AK290908|VNN2|8875|vanin 2##AK298719|VNN2|8875|vanin 2##BC126145|VNN2|8875|vanin 2##BC126147|VNN2|8875|vanin 2##BC144064|VNN2|8875|vanin 2##U39664|VNN1|8876|vanin 1##BC096268|VNN1|8876|vanin 1##AJ132099|VNN1|8876|vanin 1##BC096265|VNN1|8876|vanin 1##BC096266|VNN1|8876|vanin 1##BC096267|VNN1|8876|vanin 1##AK290425|VNN1|8876|vanin 1##AK314265|VNN1|8876|vanin 1##NM_004666|VNN1|8876|vanin 1##AY180374|TAAR1|134864|trace amine associated receptor 1##NM_138327|TAAR1|134864|trace amine associated receptor 1##BC101825|TAAR1|134864|trace amine associated receptor 1##BC112194|TAAR1|134864|trace amine associated receptor 1##AK292125|VNN2|8875|vanin 2##NM_078488|VNN2|8875|vanin 2##AK124442|C6orf192|116843|chromosome 6 open reading frame 192##BC069570|C6orf192|116843|chromosome 6 open reading frame 192##AK293853|C6orf192|116843|chromosome 6 open reading frame 192##NM_052831|C6orf192|116843|chromosome 6 open reading frame 192##AK289918|C6orf192|116843|chromosome 6 open reading frame 192##AK096147|SNORA33|594839|small nucleolar RNA, H/ACA box 33##NM_001016|RPS12|6206|ribosomal protein S12##D28378|RPS12|6206|ribosomal protein S12##X53505|RPS12|6206|ribosomal protein S12	1.218697	0.0	
chr8	141523413	141523593	reg1009217.p1	5.527	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-1940	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-2111	+	AK128755 NM_031466	-54826	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	122121	-	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	487753	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	615234	+	AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3	0.987368	0.0	denovo_WM_7:40:0.398
chr20	46097098	46097278	reg1006590.p1	5.526	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-111700	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-120541	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-169619	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	33434	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	33496	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	317564	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.0	0.0	
chr7	2595486	2595666	reg1007242.p1	5.526	+	AK131083 TSC_hg19_v1_chr7_-_2595352 NM_152743	-211	-	TSC_hg19_v1_chr7_-_2595139 AK024482 BC015632	-448	-	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	-36139	+	TSC_hg19_v1_chr7_+_2598633 BC071858 NM_001100390 NM_152558	3051	+	TSC_hg19_v1_chr7_+_2598649 AK302053	3079	+	TSC_hg19_v1_chr7_+_2598682 AK309646 BC043150	3113	+	AK131083|BRAT1|221927|BRCA1-associated ATM activator 1##NM_152743|BRAT1|221927|BRCA1-associated ATM activator 1##AK024482|BRAT1|221927|BRCA1-associated ATM activator 1##BC015632|BRAT1|221927|BRCA1-associated ATM activator 1##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC071858|IQCE|23288|IQ motif containing E##NM_001100390|IQCE|23288|IQ motif containing E##NM_152558|IQCE|23288|IQ motif containing E##AK302053|IQCE|23288|IQ motif containing E##AK309646|IQCE|23288|IQ motif containing E##BC043150|IQCE|23288|IQ motif containing E	0.0	0.0	
chr8	82016558	82016710	reg1008011.p2	5.526	+	AK131274 NM_001033723	-229619	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-618150	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-932864	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	7680	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	176139	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	343035	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.995649	0.019929	denovo_WM_7:-3:0.441	denovo_WM_7:-4:0.441
chr3	34058885	34059065	reg1008849.p2	5.525	+	TSC_hg19_v1_chr3_+_33840125 AF250394 GQ131806 AB384596 CU676494 CU686637 BT007367	-218804	+	TSC_hg19_v1_chr3_+_33840120 AF151793 BC020066	-218868	+	TSC_hg19_v1_chr3_+_33840081 BC068454 AF349951	-218892	+	TSC_hg19_v1_chr3_+_35681016 BC041385 AK057559	1622126	+	BC051828 NM_016300	1624873	+	AK055064 NM_001025068 NM_001025069 AK289868 AF112220 AK289649 AK294484	1662221	+	AF250394|PDCD6IP|10015|programmed cell death 6 interacting protein##GQ131806|PDCD6IP|10015|programmed cell death 6 interacting protein##BT007367|PDCD6IP|10015|programmed cell death 6 interacting protein##AF151793|PDCD6IP|10015|programmed cell death 6 interacting protein##BC020066|PDCD6IP|10015|programmed cell death 6 interacting protein##BC068454|PDCD6IP|10015|programmed cell death 6 interacting protein##AF349951|PDCD6IP|10015|programmed cell death 6 interacting protein##BC041385|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK057559|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC051828|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_016300|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK055064|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025068|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025069|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289868|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AF112220|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289649|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK294484|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa	0.999152	0.0	
chr6	106538666	106538829	reg1008343.p2	5.525	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	-4512	+	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	-4551	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-687752	-	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	8057	+	BC002699 TSC_hg19_v1_chr6_-_106773313	234561	-	TSC_hg19_v1_chr6_-_106773534 BX537904 AK315800	234785	-	AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain##BC002699|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BX537904|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK315800|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)	0.999785	0.0	denovo_WM_7:15:0.953
chr10	30704664	30704781	reg1007523.p1	5.524	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-66489	-	TSC_hg19_v1_chr10_-_30348516 AK308850 NM_020848 BC071601	-356228	-	TSC_hg19_v1_chr10_-_30316350 BC047548	-388291	-	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	18217	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	18399	+	AF139543 BC066294 NM_183058	213913	-	AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AK308850|KIAA1462|57608|KIAA1462##NM_020848|KIAA1462|57608|KIAA1462##BC071601|KIAA1462|57608|KIAA1462##BC047548|KIAA1462|57608|KIAA1462##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2	0.984133	0.0	denovo_WM_7:-36:0.798
chr1	16481210	16481376	reg1008953.p1	5.524	+	AB463624 CU691488 AK094085 BC037394 TSC_hg19_v1_chr1_-_16400144 BC016848 NM_182623	-81236	-	AK098217 NM_001165945	-106010	+	NM_000085 AK292335 BC020873 BC033806 Z30644	-110995	+	EU826606 DQ895231 EU176326 TSC_hg19_v1_chr1_-_16482565 M59371 BC037166 AK296788 NM_004431	1233	-	BC040640 NM_153213 AK091281 AX746893 AK297707	57841	-	NM_030907	82365	-	AK094085|FAM131C|348487|family with sequence similarity 131, member C##BC037394|FAM131C|348487|family with sequence similarity 131, member C##BC016848|FAM131C|348487|family with sequence similarity 131, member C##NM_182623|FAM131C|348487|family with sequence similarity 131, member C##AK098217|CLCNKB|1188|chloride channel Kb##NM_001165945|CLCNKB|1188|chloride channel Kb##NM_000085|CLCNKB|1188|chloride channel Kb##AK292335|CLCNKB|1188|chloride channel Kb##BC020873|CLCNKB|1188|chloride channel Kb##BC033806|CLCNKB|1188|chloride channel Kb##Z30644|CLCNKB|1188|chloride channel Kb##EU826606|EPHA2|1969|EPH receptor A2##DQ895231|EPHA2|1969|EPH receptor A2##EU176326|EPHA2|1969|EPH receptor A2##M59371|EPHA2|1969|EPH receptor A2##BC037166|EPHA2|1969|EPH receptor A2##AK296788|EPHA2|1969|EPH receptor A2##NM_004431|EPHA2|1969|EPH receptor A2##BC040640|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##NM_153213|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##AK091281|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##AK297707|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##NM_030907|RSG1|79363|REM2 and RAB-like small GTPase 1	1.001766	0.504668	CTCF.p2:27:0.505
chr12	27678403	27678583	reg1009216.p2	5.524	+	NM_001198915 NM_001198916 NM_003622 NM_177444 TSC_hg19_v1_chr12_+_27677138 BC022873 BC001560 AK294267 AB033056 BC050281 AB049149 AK314350 AF034802 BC046159	-1358	+	NM_001145010	-58751	+	BC043511 TSC_hg19_v1_chr12_-_27599649	-78889	-	NM_001029874 BC140921 AY662682	170970	+	NM_001190864 NM_021821 TSC_hg19_v1_chr12_+_27863756 AF182422	185239	+	TSC_hg19_v1_chr12_+_27863764 BC015862 AK075378 AK075515 BC109372 BC063515 BC028346	185281	+	NM_001198915|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_001198916|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_003622|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_177444|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC022873|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC001560|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AK294267|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AB033056|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC050281|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AB049149|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AK314350|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##AF034802|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##BC046159|PPFIBP1|8496|PTPRF interacting protein, binding protein 1 (liprin beta 1)##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001029874|REP15|387849|RAB15 effector protein##BC140921|REP15|387849|RAB15 effector protein##AY662682|REP15|387849|RAB15 effector protein##NM_001190864|MRPS35|60488|mitochondrial ribosomal protein S35##NM_021821|MRPS35|60488|mitochondrial ribosomal protein S35##AF182422|MRPS35|60488|mitochondrial ribosomal protein S35##BC015862|MRPS35|60488|mitochondrial ribosomal protein S35##AK075378|MRPS35|60488|mitochondrial ribosomal protein S35##AK075515|MRPS35|60488|mitochondrial ribosomal protein S35##BC109372|MRPS35|60488|mitochondrial ribosomal protein S35##BC063515|MRPS35|60488|mitochondrial ribosomal protein S35##BC028346|MRPS35|60488|mitochondrial ribosomal protein S35	0.989611	0.0	
chr12	57077925	57078025	reg1003867.p2	5.524	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-38149	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-38220	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-47849	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	3875	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	3965	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	4026	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	0.0	0.0	
chr6	130459835	130459980	reg1006680.p1	5.524	+	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	-120182	+	NM_001010876	-277492	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	-428581	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	76548	-	AK091882 AX747235 NM_001017373	84191	-	AB052099 NM_052913	298354	+	AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A	0.018131	0.0	
chr1	204513582	204513740	reg1008607.p1	5.523	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	-28051	+	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	-28159	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-49896	-	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	140930	-	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	284151	+	TSC_hg19_v1_chr1_+_204839989 AK308686	326322	+	AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AK308686|NFASC|23114|neurofascin	0.548277	0.0	denovo_WM_7:-11:0.468
chr2	137152218	137152367	reg1008726.p1	5.523	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-276616	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-278494	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-409076	-	TSC_hg19_v1_chr2_+_137523114 AK299929	370824	+	NM_001080427	596169	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1569642	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	0.998489	0.0	denovo_WM_7:-7:0.477	denovo_WM_7:-8:0.477
chr5	170794589	170794769	reg1002696.p2	5.523	+	BC017291 NM_021025 DQ892654 DQ895893 DQ896085	-58351	+	TSC_hg19_v1_chr5_+_170289029 AJ271459 AJ288952 AJ288953 AJ288954 AJ288955 BC030953 AF222747 AB527205 AL832980	-505657	+	TSC_hg19_v1_chr5_+_170288885 AK298785 NM_022897 AK315159	-505748	+	NM_001037738 NM_002520 NM_199185 TSC_hg19_v1_chr5_+_170814855 D28343 AK290652 BC008495 BC107754 BC012566 BC021668 DQ303464 BC016716 BC016768 BC016824 BC021983 BC014349 BC002398 M23613 M26697 BC020467 BC050628 M28699 AY740634 AY740635 AY740636 AY740637 AY740638 AY740639 AY740640 BC063542	20118	+	AB042278 AB451236 AB451361 AB463949 BT007011 CU676967 CU677717 CU680364 CU692436 DQ892032 DQ895223 EF429251 X16934 TSC_hg19_v1_chr5_+_170815031	20312	+	AY358811 AF075292 NM_003862	51983	+	BC017291|TLX3|30012|T-cell leukemia homeobox 3##NM_021025|TLX3|30012|T-cell leukemia homeobox 3##DQ892654|TLX3|30012|T-cell leukemia homeobox 3##DQ895893|TLX3|30012|T-cell leukemia homeobox 3##DQ896085|TLX3|30012|T-cell leukemia homeobox 3##AJ271459|RANBP17|64901|RAN binding protein 17##AJ288952|RANBP17|64901|RAN binding protein 17##AJ288953|RANBP17|64901|RAN binding protein 17##AJ288954|RANBP17|64901|RAN binding protein 17##AJ288955|RANBP17|64901|RAN binding protein 17##BC030953|RANBP17|64901|RAN binding protein 17##AF222747|RANBP17|64901|RAN binding protein 17##AL832980|RANBP17|64901|RAN binding protein 17##AK298785|RANBP17|64901|RAN binding protein 17##NM_022897|RANBP17|64901|RAN binding protein 17##AK315159|RANBP17|64901|RAN binding protein 17##NM_001037738|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##NM_002520|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##NM_199185|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##D28343|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AK290652|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC008495|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC107754|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC012566|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC021668|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ303464|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC016716|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC016768|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC016824|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC021983|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC014349|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC002398|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##M23613|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##M26697|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC020467|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BC050628|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##M28699|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740634|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740635|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740636|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740637|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740638|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740639|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY740640|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB042278|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB451236|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AB451361|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##BT007011|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ892032|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##DQ895223|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##EF429251|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##X16934|NPM1|4869|nucleophosmin (nucleolar phosphoprotein B23, numatrin)##AY358811|FGF18|8817|fibroblast growth factor 18##AF075292|FGF18|8817|fibroblast growth factor 18##NM_003862|FGF18|8817|fibroblast growth factor 18	0.998675	0.0	
chr9	132357907	132358038	reg1009410.p2	5.523	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	-106531	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	-106618	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	-274677	+	BC112353 AK093122 AX747938 NM_199350	25065	-	TSC_hg19_v1_chr9_+_132388441 NM_014064 AK290957 AK292332 AK298840 AK307056 AK313829	30453	+	TSC_hg19_v1_chr9_+_132388461 BC001396 BC033234 AF110776	30498	+	BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##BC112353|C9orf50|375759|chromosome 9 open reading frame 50##AK093122|C9orf50|375759|chromosome 9 open reading frame 50##NM_199350|C9orf50|375759|chromosome 9 open reading frame 50##NM_014064|METTL11A|28989|methyltransferase like 11A##AK290957|METTL11A|28989|methyltransferase like 11A##AK292332|METTL11A|28989|methyltransferase like 11A##AK298840|METTL11A|28989|methyltransferase like 11A##AK307056|METTL11A|28989|methyltransferase like 11A##AK313829|METTL11A|28989|methyltransferase like 11A##BC001396|METTL11A|28989|methyltransferase like 11A##BC033234|METTL11A|28989|methyltransferase like 11A##AF110776|METTL11A|28989|methyltransferase like 11A	0.999208	0.0	denovo_WM_7:48:0.239	denovo_WM_7:49:0.239	denovo_WM_7:50:0.239	denovo_WM_7:51:0.239
chr17	65651689	65651817	reg1008439.p1	5.522	+	BC007905 NM_012417 NM_181671	-277830	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-278165	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-278344	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	62297	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	169949	+	AK293224 TSC_hg19_v1_chr17_+_65822221	170464	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.99967	0.0	
chr17	75407421	75407527	reg1006859.p2	5.522	+	AB023208 NM_001113494 AJ312322	-35305	+	TSC_hg19_v1_chr17_+_75369418 AK304143	-38049	+	TSC_hg19_v1_chr17_+_75369236 AJ312319 NM_001113493	-38221	+	NM_001113496 TSC_hg19_v1_chr17_+_75446637	39171	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	39308	+	AK299828 TSC_hg19_v1_chr17_+_75447450	39915	+	AB023208|SEPT9|10801|septin 9##NM_001113494|SEPT9|10801|septin 9##AJ312322|SEPT9|10801|septin 9##AK304143|SEPT9|10801|septin 9##AJ312319|SEPT9|10801|septin 9##NM_001113493|SEPT9|10801|septin 9##NM_001113496|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9	0.990884	0.0	denovo_WM_7:13:0.777
chr6	26286677	26286851	reg1009182.p1	5.522	+	BC120939 CR542169 CR542187 NM_003543 DQ892790 DQ896037 BC010926 TSC_hg19_v1_chr6_-_26285763	-1019	-	BC101653 BC101655 EU446969 NM_003525	-13591	+	TSC_hg19_v1_chr6_-_26271642 AB591037 EU446974 NM_003534 BC079835	-15147	-	NM_001197247 NM_001197249 NM_007047 TSC_hg19_v1_chr6_+_26365425 AK312847 AK290880 U90546 AK303600 NM_001197248 BC002832 BC020214 AK299417	78688	+	AF257505 NM_001197246	81641	+	NM_001197238 NM_001197239 NM_001197240 NM_006995 NM_181531 AK304744 AK289883 AK293526 AK298570 U90550 BC017497 NM_001197237 BC014021	96628	+	BC120939|HIST1H4H|8365|histone cluster 1, H4h##CR542169|HIST1H4H|8365|histone cluster 1, H4h##CR542187|HIST1H4H|8365|histone cluster 1, H4h##NM_003543|HIST1H4H|8365|histone cluster 1, H4h##DQ892790|HIST1H4H|8365|histone cluster 1, H4h##DQ896037|HIST1H4H|8365|histone cluster 1, H4h##BC010926|HIST1H4H|8365|histone cluster 1, H4h##BC101653|HIST1H2BI|8346|histone cluster 1, H2bi##BC101655|HIST1H2BI|8346|histone cluster 1, H2bi##EU446969|HIST1H2BI|8346|histone cluster 1, H2bi##NM_003525|HIST1H2BI|8346|histone cluster 1, H2bi##EU446974|HIST1H3G|8355|histone cluster 1, H3g##NM_003534|HIST1H3G|8355|histone cluster 1, H3g##BC079835|HIST1H3G|8355|histone cluster 1, H3g##NM_001197247|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197249|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_007047|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK312847|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK290880|BTN3A2|11118|butyrophilin, subfamily 3, member A2##U90546|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK303600|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197248|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC002832|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC020214|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK299417|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AF257505|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197246|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197238|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197239|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197240|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_006995|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_181531|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK304744|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK289883|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK293526|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK298570|BTN2A2|10385|butyrophilin, subfamily 2, member A2##U90550|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC017497|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197237|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC014021|BTN2A2|10385|butyrophilin, subfamily 2, member A2	0.051206	0.0	
chr20	2332743	2332899	reg1005834.p1	5.521	+	NM_003245 AK298637 AK299447 AK308249 AK290324 AK291351 AK315236 L10386 BC109075 BC109076	-56172	+	TSC_hg19_v1_chr20_-_2083527 BC034792	-249295	-	BC140883 BC140884 TSC_hg19_v1_chr20_+_2083583 AB527968 AF195026 BC111573 BC017340 AK302629	-249306	+	AF540969 AF540970 NM_198994	28732	+	TSC_hg19_v1_chr20_-_2451416 X17568 X17567 BC080516	118569	-	TSC_hg19_v1_chr20_-_2451436 AK301034 AK312620 AK301206 AK307093 AK307266	118611	-	NM_003245|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK298637|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK299447|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK308249|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK290324|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK291351|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK315236|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##L10386|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC109075|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC109076|TGM3|7053|transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC140883|STK35|140901|serine/threonine kinase 35##BC140884|STK35|140901|serine/threonine kinase 35##AF195026|STK35|140901|serine/threonine kinase 35##BC111573|STK35|140901|serine/threonine kinase 35##BC017340|STK35|140901|serine/threonine kinase 35##AK302629|STK35|140901|serine/threonine kinase 35##AF540969|TGM6|343641|transglutaminase 6##AF540970|TGM6|343641|transglutaminase 6##NM_198994|TGM6|343641|transglutaminase 6##X17568|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##X17567|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##BC080516|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK301034|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK312620|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK301206|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AK307093|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1	1.952435	0.0	denovo_WM_7:6:0.853	denovo_WM_7:21:0.844
chr2	171265170	171265323	reg1009116.p1	5.521	+	AF369908 AF391554 AF391555 AF391556 AF391557 AF391558 NM_001083615 NM_001171642 NM_138995 BC136620 BC144307	-230561	+	TSC_hg19_v1_chr2_+_170683963 NM_172070	-581288	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	-583861	-	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	306612	+	TSC_hg19_v1_chr2_+_171571942 AB464708	306731	+	TSC_hg19_v1_chr2_+_171572707 BC069026	307464	+	AF369908|MYO3B|140469|myosin IIIB##AF391554|MYO3B|140469|myosin IIIB##AF391555|MYO3B|140469|myosin IIIB##AF391556|MYO3B|140469|myosin IIIB##AF391557|MYO3B|140469|myosin IIIB##AF391558|MYO3B|140469|myosin IIIB##NM_001083615|MYO3B|140469|myosin IIIB##NM_001171642|MYO3B|140469|myosin IIIB##NM_138995|MYO3B|140469|myosin IIIB##BC136620|MYO3B|140469|myosin IIIB##BC144307|MYO3B|140469|myosin IIIB##NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor##BC069026|SP5|389058|Sp5 transcription factor	0.994851	0.0	denovo_WM_7:28:0.949
chr1	205600394	205600527	reg1005687.p1	5.520	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	-62247	+	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	-62333	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-126638	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	446	-	NM_001973 NM_021795	1539	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	49108	-	BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3	0.0	0.0	
chr17	3774501	3774616	reg1007791.p1	5.520	+	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	-25048	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	-70047	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	-70105	-	AF425301 NM_172206	19478	-	BC031647 TSC_hg19_v1_chr17_-_3796278 AF425232 BC043487	21733	-	AL136576 NM_032294 NM_172207 TSC_hg19_v1_chr17_-_3796348	21785	-	NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AF425301|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172206|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC031647|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AF425232|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC043487|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AL136576|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_032294|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172207|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha	3.673892	0.0	denovo_WM_7:49:0.800	denovo_WM_7:69:0.576	denovo_WM_7:70:0.297	denovo_WM_7:84:0.563	denovo_WM_7:85:0.316	denovo_WM_7:99:0.296	denovo_WM_7:100:0.611
chr4	113207377	113207525	reg1009109.p1	5.520	+	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	-450	-	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-54367	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-140837	+	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	11076	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	229881	-	TSC_hg19_v1_chr4_-_113558057 BC044799 BC028584 AK002193	350595	-	BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2##BC044799|C4orf21|55345|chromosome 4 open reading frame 21##BC028584|C4orf21|55345|chromosome 4 open reading frame 21##AK002193|C4orf21|55345|chromosome 4 open reading frame 21	0.982485	0.0	denovo_WM_7:71:0.523
chr5	39106568	39106724	reg1008377.p1	5.520	+	TSC_hg19_v1_chr5_-_39074499 AY515854 BC029608 BC137163 BC137164 BC144509 NM_152756	-32149	-	CU688716 DQ891672 DQ894858 TSC_hg19_v1_chr5_-_39074493 AK128358 CR749280	-32161	-	TSC_hg19_v1_chr5_+_38846260 BC125209 BC125210	-260351	+	AF198052 U93049 AF001862 TSC_hg19_v1_chr5_-_39203164	96471	-	BC117449 BC143645 BC015933 BX647195 BX647196 TSC_hg19_v1_chr5_-_39219666 AK130159 AK290403 NM_001465 NM_199335	112983	-	TSC_hg19_v1_chr5_-_39270745 AK297077 NM_001243093	164093	-	AY515854|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC029608|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137163|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC137164|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC144509|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##NM_152756|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##DQ891672|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##DQ894858|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##AK128358|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##CR749280|RICTOR|253260|RPTOR independent companion of MTOR, complex 2##BC125209|OSMR|9180|oncostatin M receptor##BC125210|OSMR|9180|oncostatin M receptor##AF198052|FYB|2533|FYN binding protein##U93049|FYB|2533|FYN binding protein##AF001862|FYB|2533|FYN binding protein##BC117449|FYB|2533|FYN binding protein##BC143645|FYB|2533|FYN binding protein##BC015933|FYB|2533|FYN binding protein##BX647195|FYB|2533|FYN binding protein##BX647196|FYB|2533|FYN binding protein##AK130159|FYB|2533|FYN binding protein##AK290403|FYB|2533|FYN binding protein##NM_001465|FYB|2533|FYN binding protein##NM_199335|FYB|2533|FYN binding protein##AK297077|FYB|2533|FYN binding protein##NM_001243093|FYB|2533|FYN binding protein	1.756957	0.604388	denovo_WM_7:0:0.313	denovo_WM_7:2:0.241	denovo_WM_7:30:0.855	CTCF.p2:-40:0.604
chr6	111091212	111091324	reg1006728.p1	5.520	+	TSC_hg19_v1_chr6_-_110797837 BC047565 NM_033125	-293405	-	TSC_hg19_v1_chr6_-_110797817 AK304546	-293450	-	BC012014 AF268892 AY145502 BC037247 TSC_hg19_v1_chr6_-_110797794	-293480	-	AK304351 TSC_hg19_v1_chr6_+_111135843	44565	+	BC047513 TSC_hg19_v1_chr6_-_111136246	44950	-	AJ420571 TSC_hg19_v1_chr6_-_111136300	45031	-	BC047565|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##NM_033125|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304546|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC012014|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AF268892|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AY145502|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC037247|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304351|AMD1|262|adenosylmethionine decarboxylase 1##BC047513|CDK19|23097|cyclin-dependent kinase 19##AJ420571|CDK19|23097|cyclin-dependent kinase 19	0.0	0.0	
chr11	66158878	66159058	reg1007977.p2	5.519	+	AF029358 BC093634 BC143335 X86681 TSC_hg19_v1_chr11_-_66139222 AF034102 AF401235 NM_001532	-19791	-	CU692428 DQ892706 DQ895957 AK075354 AK098779 AK225182 TSC_hg19_v1_chr11_-_66115101 AK294604 BC021965 AK293715 AF029893 AK098389 NM_006876	-43877	-	BC009834 TSC_hg19_v1_chr11_-_66112576 AF159141 AK310991 NM_001024957 NM_015399	-46408	-	AK096253 NM_178864 TSC_hg19_v1_chr11_+_66188505 AB049469 BC105001 BC105003 BC143630 EU446888	29593	+	TSC_hg19_v1_chr11_-_66206308 BC108277 AB049638 AK290084 AK223112 BC005002 AF151871 NM_016050 NM_170738 NM_170739	47318	-	AK094060 AX748433 NM_001243135	74829	+	AF029358|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##BC093634|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##BC143335|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##X86681|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AF034102|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AF401235|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##NM_001532|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##DQ892706|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##DQ895957|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK075354|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK098779|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK225182|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK294604|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##BC021965|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK293715|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AF029893|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK098389|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##NM_006876|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##BC009834|BRMS1|25855|breast cancer metastasis suppressor 1##AF159141|BRMS1|25855|breast cancer metastasis suppressor 1##AK310991|BRMS1|25855|breast cancer metastasis suppressor 1##NM_001024957|BRMS1|25855|breast cancer metastasis suppressor 1##NM_015399|BRMS1|25855|breast cancer metastasis suppressor 1##AK096253|NPAS4|266743|neuronal PAS domain protein 4##NM_178864|NPAS4|266743|neuronal PAS domain protein 4##AB049469|NPAS4|266743|neuronal PAS domain protein 4##BC105001|NPAS4|266743|neuronal PAS domain protein 4##BC105003|NPAS4|266743|neuronal PAS domain protein 4##BC143630|NPAS4|266743|neuronal PAS domain protein 4##EU446888|NPAS4|266743|neuronal PAS domain protein 4##BC108277|MRPL11|65003|mitochondrial ribosomal protein L11##AB049638|MRPL11|65003|mitochondrial ribosomal protein L11##AK290084|MRPL11|65003|mitochondrial ribosomal protein L11##AK223112|MRPL11|65003|mitochondrial ribosomal protein L11##BC005002|MRPL11|65003|mitochondrial ribosomal protein L11##AF151871|MRPL11|65003|mitochondrial ribosomal protein L11##NM_016050|MRPL11|65003|mitochondrial ribosomal protein L11##NM_170738|MRPL11|65003|mitochondrial ribosomal protein L11##NM_170739|MRPL11|65003|mitochondrial ribosomal protein L11##AK094060|PELI3|246330|pellino homolog 3 (Drosophila)##NM_001243135|PELI3|246330|pellino homolog 3 (Drosophila)	1.246182	0.0	denovo_WM_7:44:0.272	denovo_WM_7:-64:0.922
chr14	71830091	71830213	reg1008531.p1	5.519	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-455701	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-456019	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-554343	-	AF090989 AF090990 NM_015556	165889	+	AK294895 NM_001204423	568664	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	569001	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.0	0.0	
chr17	58433172	58433326	reg1008560.p2	5.519	+	TSC_hg19_v1_chr17_+_58227333 BC069649 M83670 BC074768 CR541766 CU691238	-205887	+	TSC_hg19_v1_chr17_+_58227302 BC057792 NM_000717 AK289715 AK298710	-205959	+	TSC_hg19_v1_chr17_-_58213006 AK311448	-220238	-	CU691084 TSC_hg19_v1_chr17_-_58469313 BC054344	36069	-	TSC_hg19_v1_chr17_-_58469447 AF533230	36209	-	TSC_hg19_v1_chr17_-_58469580 NM_032582 AK057301	36423	-	BC069649|CA4|762|carbonic anhydrase IV##M83670|CA4|762|carbonic anhydrase IV##BC074768|CA4|762|carbonic anhydrase IV##CR541766|CA4|762|carbonic anhydrase IV##BC057792|CA4|762|carbonic anhydrase IV##NM_000717|CA4|762|carbonic anhydrase IV##AK289715|CA4|762|carbonic anhydrase IV##AK298710|CA4|762|carbonic anhydrase IV##BC054344|USP32|84669|ubiquitin specific peptidase 32##AF533230|USP32|84669|ubiquitin specific peptidase 32##NM_032582|USP32|84669|ubiquitin specific peptidase 32##AK057301|USP32|84669|ubiquitin specific peptidase 32	2.996858	0.0	denovo_WM_7:-25:0.857	denovo_WM_7:-48:0.449	denovo_WM_7:-49:0.449
chr3	178240088	178240202	reg1008201.p2	5.519	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-1325086	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-1325194	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-1325895	-	BC017825 NM_181361	14078	+	AF209747 NM_005832	36407	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	549420	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	0.899805	0.0	denovo_WM_7:-7:0.765
chr5	142593716	142593836	reg1005191.p2	5.519	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-443468	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-443804	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-516205	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	189047	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	189330	-	BC015610 TSC_hg19_v1_chr5_-_142783214	189435	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.0	0.0	
chr5	89735702	89735835	reg1004218.p1	5.519	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	-30229	-	AL833268 AL833274 NM_001131005 NM_001193347	-1535874	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1550504	+	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	34414	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	34810	-	NM_006467 AK295434 U93868	34934	+	BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)	0.0	0.935535	CTCF.p2:-88:0.936
chr1	157356522	157356679	reg1012124.p1	5.518	+	TSC_hg19_v1_chr1_-_157108169 BC022868 NM_005240 AK304789 AK316274 NM_001145312	-248317	-	TSC_hg19_v1_chr1_-_157108158 L16464	-248450	-	AK131392 NM_001004341	-287001	-	AF397453 BC101066 BC101067 BC101068 BC101069 AF343662 AF343663 AF343664 AF343665 AK301356 AL834187 AY358085 AK311561 AK300010 AF369794 NM_001195388 NM_031281	165630	-	AF329490 AF397452 BC143628 BC125173 BC125174 AF343659 AF343660 AF343661 NM_031282	211201	-	DQ892459 DQ895672 AY043466 AF416901 AF416902 AF416903 AF416904 AF416905 BC028933 BC013698 AK301257 AF459027 NM_052939 AK098122	313927	-	BC022868|ETV3|2117|ets variant 3##NM_005240|ETV3|2117|ets variant 3##AK304789|ETV3|2117|ets variant 3##AK316274|ETV3|2117|ets variant 3##NM_001145312|ETV3|2117|ets variant 3##L16464|ETV3|2117|ets variant 3##AK131392|ETV3L|440695|ets variant 3-like##NM_001004341|ETV3L|440695|ets variant 3-like##AF397453|FCRL5|83416|Fc receptor-like 5##BC101066|FCRL5|83416|Fc receptor-like 5##BC101067|FCRL5|83416|Fc receptor-like 5##BC101068|FCRL5|83416|Fc receptor-like 5##BC101069|FCRL5|83416|Fc receptor-like 5##AF343662|FCRL5|83416|Fc receptor-like 5##AF343663|FCRL5|83416|Fc receptor-like 5##AF343664|FCRL5|83416|Fc receptor-like 5##AF343665|FCRL5|83416|Fc receptor-like 5##AK301356|FCRL5|83416|Fc receptor-like 5##AL834187|FCRL5|83416|Fc receptor-like 5##AY358085|FCRL5|83416|Fc receptor-like 5##AK300010|FCRL5|83416|Fc receptor-like 5##AF369794|FCRL5|83416|Fc receptor-like 5##NM_001195388|FCRL5|83416|Fc receptor-like 5##NM_031281|FCRL5|83416|Fc receptor-like 5##AF329490|FCRL4|83417|Fc receptor-like 4##AF397452|FCRL4|83417|Fc receptor-like 4##BC143628|FCRL4|83417|Fc receptor-like 4##BC125173|FCRL4|83417|Fc receptor-like 4##BC125174|FCRL4|83417|Fc receptor-like 4##AF343659|FCRL4|83417|Fc receptor-like 4##AF343660|FCRL4|83417|Fc receptor-like 4##AF343661|FCRL4|83417|Fc receptor-like 4##NM_031282|FCRL4|83417|Fc receptor-like 4##DQ892459|FCRL3|115352|Fc receptor-like 3##DQ895672|FCRL3|115352|Fc receptor-like 3##AY043466|FCRL3|115352|Fc receptor-like 3##AF416901|FCRL3|115352|Fc receptor-like 3##AF416902|FCRL3|115352|Fc receptor-like 3##AF416903|FCRL3|115352|Fc receptor-like 3##AF416904|FCRL3|115352|Fc receptor-like 3##AF416905|FCRL3|115352|Fc receptor-like 3##BC028933|FCRL3|115352|Fc receptor-like 3##BC013698|FCRL3|115352|Fc receptor-like 3##AK301257|FCRL3|115352|Fc receptor-like 3##AF459027|FCRL3|115352|Fc receptor-like 3##NM_052939|FCRL3|115352|Fc receptor-like 3##AK098122|FCRL3|115352|Fc receptor-like 3	0.762975	0.0	denovo_WM_7:36:0.750
chr19	16184825	16184954	reg1007606.p2	5.518	+	TSC_hg19_v1_chr19_+_16178347 NM_001145160 AK023385	-6629	+	BC031284 TSC_hg19_v1_chr19_+_16145007	-39921	+	NM_001004465	-125072	+	TSC_hg19_v1_chr19_+_16187132 NM_003290	2211	+	TSC_hg19_v1_chr19_+_16187304 BC037576 AK300136 AK307538 AK301285	2396	+	TSC_hg19_v1_chr19_+_16187306 BC067225	2420	+	NM_001145160|TPM4|7171|tropomyosin 4##AK023385|TPM4|7171|tropomyosin 4##BC031284|FLJ25328|148231|uncharacterized LOC148231##NM_001004465|OR10H4|126541|olfactory receptor, family 10, subfamily H, member 4##NM_003290|TPM4|7171|tropomyosin 4##BC037576|TPM4|7171|tropomyosin 4##AK300136|TPM4|7171|tropomyosin 4##AK307538|TPM4|7171|tropomyosin 4##AK301285|TPM4|7171|tropomyosin 4##BC067225|TPM4|7171|tropomyosin 4	2.010958	0.0	denovo_WM_7:-65:0.930	denovo_WM_7:95:0.346	denovo_WM_7:96:0.454
chr4	40520077	40520223	reg1008390.p1	5.518	+	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-2192	-	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	-3566	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-182705	+	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	111715	-	AK304206 TSC_hg19_v1_chr4_-_40632775	112557	-	BC042401 NM_024677 BC036568 AK024063	231796	+	AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK304206|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7	1.972658	0.0	denovo_WM_7:28:0.807	denovo_WM_7:43:0.204	denovo_WM_7:44:0.212	denovo_WM_7:45:0.220	denovo_WM_7:46:0.355
chr1	202197325	202197424	reg1004819.p1	5.517	+	AF190501 NM_001017404	-14092	+	AY358119 BC038795 NM_021636 BC047905	-24482	+	NM_001017403 AB049405	-34200	+	AK000504 AF160215 BC004152 BC019284 TSC_hg19_v1_chr1_-_202311065	113682	-	TSC_hg19_v1_chr1_-_202311082 AF161499 NM_014176	113712	-	TSC_hg19_v1_chr1_+_202317826 AK307591 NM_001167857 NM_001167858 NM_002481 AB003062 AF324888 BC144699 BC110907 BC034430 BC071166	120499	+	AF190501|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017404|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AY358119|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC038795|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_021636|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC047905|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017403|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AB049405|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AK000504|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF160215|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC004152|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC019284|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF161499|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##NM_014176|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AK307591|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167857|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167858|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_002481|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB003062|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF324888|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC144699|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC110907|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC034430|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC071166|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B	0.0	0.0	
chr2	216874041	216874158	reg1010087.p1	5.517	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-573317	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-573579	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-584127	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	4237	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	72445	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	72593	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.057612	0.0	
chr3	196178506	196178686	reg1007062.p1	5.517	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-19263	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-19297	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-19313	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	51982	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	63617	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	116794	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	1.99042	0.0	denovo_WM_7:-8:0.269	denovo_WM_7:-9:0.224	denovo_WM_7:-27:0.232	denovo_WM_7:-28:0.277
chr5	138609354	138609520	reg1000581.p1	5.517	+	TSC_hg19_v1_chr5_-_138534058 AJ299442 AK074624 NM_001037633 NM_022464	-75391	-	TSC_hg19_v1_chr5_-_138533998 AY358950 BC011568	-75429	-	AF547994 TSC_hg19_v1_chr5_-_138533996 AK075177	-75448	-	AK307872 NM_001194954 NM_199189 TSC_hg19_v1_chr5_+_138609537	51	+	TSC_hg19_v1_chr5_+_138609789 BC036498 CR749625 AK293952 AJ224166 AJ224167 AJ224168 AJ224169 AJ224170	367	+	TSC_hg19_v1_chr5_+_138629336 NM_018834	19902	+	AJ299442|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK074624|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_001037633|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_022464|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AY358950|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##BC011568|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AF547994|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK075177|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK307872|MATR3|9782|matrin 3##NM_001194954|MATR3|9782|matrin 3##NM_199189|MATR3|9782|matrin 3##BC036498|MATR3|9782|matrin 3##CR749625|MATR3|9782|matrin 3##AK293952|MATR3|9782|matrin 3##AJ224166|MATR3|9782|matrin 3##AJ224167|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224168|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224169|MATR3|9782|matrin 3##AJ224170|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##NM_018834|MATR3|9782|matrin 3	0.0	0.0	
chr4	103789194	103789281	reg1007162.p2	5.516	+	TSC_hg19_v1_chr4_-_103748970 BC037894 NM_003340 NM_181886 NM_181888 BC003395 AK315775 NM_181889	-40101	-	TSC_hg19_v1_chr4_-_103748709 BC066917 NM_181887 NM_181891 AL833414	-40551	-	AK095822 TSC_hg19_v1_chr4_-_103748316 NM_181892	-40941	-	NM_181893 NM_181890	779	-	TSC_hg19_v1_chr4_+_103790148 NM_001008388	915	+	TSC_hg19_v1_chr4_+_103790197 AK292134 BC020831 BX537971 BC032300 AM392809 AM393385	979	+	BC037894|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_003340|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181886|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181888|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##BC003395|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AK315775|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181889|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##BC066917|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181887|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181891|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AL833414|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AK095822|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181892|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181893|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181890|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_001008388|CISD2|493856|CDGSH iron sulfur domain 2##AK292134|CISD2|493856|CDGSH iron sulfur domain 2##BC020831|CISD2|493856|CDGSH iron sulfur domain 2##BX537971|CISD2|493856|CDGSH iron sulfur domain 2##BC032300|CISD2|493856|CDGSH iron sulfur domain 2##AM392809|CISD2|493856|CDGSH iron sulfur domain 2##AM393385|CISD2|493856|CDGSH iron sulfur domain 2	0.989924	0.0	denovo_WM_7:0:0.236	denovo_WM_7:0:0.236	denovo_WM_7:1:0.236	denovo_WM_7:2:0.236
chr9	100685410	100685532	reg1007336.p2	5.516	+	TSC_hg19_v1_chr9_-_100684783 CU678254 DQ892983 DQ896231 AY189280 AF151053 AK309270 BC002863 AK000213 AK302701 NM_016481	-661	-	AB464529 TSC_hg19_v1_chr9_+_100616210	-69269	+	TSC_hg19_v1_chr9_+_100615409 NM_004473	-70000	+	AF306683 AF306682 AL833094 AY255672 NM_197978 AY244805	15050	-	AF228713 AF322875 BC048324 AK292441 NM_018437	21646	-	TSC_hg19_v1_chr9_+_100745521 NM_006401	60034	+	DQ892983|C9orf156|51531|chromosome 9 open reading frame 156##DQ896231|C9orf156|51531|chromosome 9 open reading frame 156##AY189280|C9orf156|51531|chromosome 9 open reading frame 156##AF151053|C9orf156|51531|chromosome 9 open reading frame 156##AK309270|C9orf156|51531|chromosome 9 open reading frame 156##BC002863|C9orf156|51531|chromosome 9 open reading frame 156##AK000213|C9orf156|51531|chromosome 9 open reading frame 156##AK302701|C9orf156|51531|chromosome 9 open reading frame 156##NM_016481|C9orf156|51531|chromosome 9 open reading frame 156##NM_004473|FOXE1|2304|forkhead box E1 (thyroid transcription factor 2)##AF306683|HEMGN|55363|hemogen##AF306682|HEMGN|55363|hemogen##AL833094|HEMGN|55363|hemogen##AY255672|HEMGN|55363|hemogen##NM_197978|HEMGN|55363|hemogen##AY244805|HEMGN|55363|hemogen##AF228713|HEMGN|55363|hemogen##AF322875|HEMGN|55363|hemogen##BC048324|HEMGN|55363|hemogen##AK292441|HEMGN|55363|hemogen##NM_018437|HEMGN|55363|hemogen##NM_006401|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	1.087382	0.0	
chr3	118247367	118247484	reg1007440.p2	5.515	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-2083052	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-2083094	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-2905006	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	506108	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	506258	-	AK097667 NM_152538 AK292387	617472	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	0.924771	0.0	denovo_WM_7:39:0.726
chr4	156545643	156545777	reg1006864.p1	5.514	+	TSC_hg19_v1_chr4_-_156298108 AK024812 AY690636 NM_001039580	-247599	-	TSC_hg19_v1_chr4_-_156297990 AK301075 BC146864 BC128540 BC128541 BC056683	-247702	-	TSC_hg19_v1_chr4_-_156297959 BC022852	-247755	-	NM_000856 NM_001130682 NM_001130686 NM_001130687 X66534 Y15723 AK312952 BC095395 TSC_hg19_v1_chr4_+_156587999 AK309950 AK096588 NM_001130683 NM_001130685 BX649180 AK226125 BX647200 BC012627	42465	+	TSC_hg19_v1_chr4_+_156588813 NM_001130684 BC028384	43107	+	NM_000857 TSC_hg19_v1_chr4_+_156680190 AK315944 AK300296 AK315199 AK296680 AK307838 BC026332 BC060835 BC047620 X66533 AF020340	134494	+	AK024812|MAP9|79884|microtubule-associated protein 9##AY690636|MAP9|79884|microtubule-associated protein 9##NM_001039580|MAP9|79884|microtubule-associated protein 9##AK301075|MAP9|79884|microtubule-associated protein 9##BC146864|MAP9|79884|microtubule-associated protein 9##BC128540|MAP9|79884|microtubule-associated protein 9##BC128541|MAP9|79884|microtubule-associated protein 9##BC056683|MAP9|79884|microtubule-associated protein 9##BC022852|MAP9|79884|microtubule-associated protein 9##NM_000856|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130682|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130686|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130687|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##X66534|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##Y15723|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK312952|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC095395|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK309950|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK096588|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130683|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130685|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX649180|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##AK226125|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BX647200|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC012627|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_001130684|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##BC028384|GUCY1A3|2982|guanylate cyclase 1, soluble, alpha 3##NM_000857|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315944|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK300296|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK315199|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK296680|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AK307838|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC026332|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC060835|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##BC047620|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##X66533|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3##AF020340|GUCY1B3|2983|guanylate cyclase 1, soluble, beta 3	0.986806	0.0	denovo_WM_7:-29:0.916
chr12	916655	916835	reg1005797.p2	5.513	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-53989	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	-54589	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-144030	-	BC013629 TSC_hg19_v1_chr12_+_1017145	100337	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	142081	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	183707	+	AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1	0.0	0.0	
chr7	104704611	104704791	reg1009017.p2	5.513	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-23287	+	TSC_hg19_v1_chr7_+_104654651 AY147037 NM_018682 NM_182931 BC053906 BC062583 BC009061 BC001296 BC142987 BC040004 AF519459 AK000940 BC040848	-49927	+	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	-50199	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	47677	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	204782	-	TSC_hg19_v1_chr7_-_105029265 AB489157	324564	-	AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY147037|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_018682|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182931|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC053906|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC062583|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC009061|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC001296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC142987|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC040004|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AF519459|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AK000940|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC040848|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2	1.990404	0.0	denovo_WM_7:-66:0.253	denovo_WM_7:-68:0.348	denovo_WM_7:-69:0.217	denovo_WM_7:-81:0.261	denovo_WM_7:-84:0.360
chr1	109076248	109076428	reg1004760.p1	5.512	+	NM_001143987 NM_001143988 BC125161 BC125162	-83416	+	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	-289656	-	TSC_hg19_v1_chr1_+_108742987 AK130480	-333329	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	26704	+	BC088366 TSC_hg19_v1_chr1_-_109203698 NM_001102592 BC012198	127430	-	TSC_hg19_v1_chr1_-_109204071 AK311542 AK310152 AK055087 NM_144584	127753	-	NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B##BC088366|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_001102592|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##BC012198|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK311542|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK310152|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK055087|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_144584|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)	0.011681	0.0	
chr6	53171711	53171853	reg1009584.p1	5.512	+	BC096288 BC096289 AK309881 NM_003643 D88613	-158179	-	AF176704 NM_012347	-236012	+	TSC_hg19_v1_chr6_+_52930242 AF155114 AL137520 NM_033480	-241461	+	AK125098 TSC_hg19_v1_chr6_-_53213676	41857	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	41939	-	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	42079	-	BC096288|GCM1|8521|glial cells missing homolog 1 (Drosophila)##BC096289|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AK309881|GCM1|8521|glial cells missing homolog 1 (Drosophila)##NM_003643|GCM1|8521|glial cells missing homolog 1 (Drosophila)##D88613|GCM1|8521|glial cells missing homolog 1 (Drosophila)##AF176704|FBXO9|26268|F-box protein 9##NM_012347|FBXO9|26268|F-box protein 9##AL137520|FBXO9|26268|F-box protein 9##NM_033480|FBXO9|26268|F-box protein 9##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5	0.0	0.0	
chr10	120746801	120746905	reg1007082.p2	5.511	+	TSC_hg19_v1_chr10_-_120514701 AY743663 BC038294 NM_153810	-232136	-	TSC_hg19_v1_chr10_-_120514483 AJ544771 AK097728	-232342	-	CU691560 TSC_hg19_v1_chr10_-_120514298	-232566	-	AF458985 NM_199461 AF275269	42396	+	BC114429 BC114429 TSC_hg19_v1_chr10_-_120840295 U58046 U58046 BC054342 BC033769	93415	-	TSC_hg19_v1_chr10_-_120840299 U78311 U78311	93446	-	AY743663|C10orf46|143384|chromosome 10 open reading frame 46##BC038294|C10orf46|143384|chromosome 10 open reading frame 46##NM_153810|C10orf46|143384|chromosome 10 open reading frame 46##AJ544771|C10orf46|143384|chromosome 10 open reading frame 46##AK097728|C10orf46|143384|chromosome 10 open reading frame 46##AF458985|NANOS1|340719|nanos homolog 1 (Drosophila)##NM_199461|NANOS1|340719|nanos homolog 1 (Drosophila)##AF275269|NANOS1|340719|nanos homolog 1 (Drosophila)##BC114429|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC114429|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U58046|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U58046|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC054342|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##BC033769|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U78311|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A##U78311|EIF3A|8661|eukaryotic translation initiation factor 3, subunit A	0.039473	0.0	
chr12	116634119	116634292	reg1009574.p2	5.511	+	TSC_hg19_v1_chr12_-_115121970 AK054604 NM_005996 NM_016569	-1512065	-	AB051068 AF221714 NM_000192 NM_080717 Y09445	-1787987	-	BC027942 NM_181486 TSC_hg19_v1_chr12_-_114843950	-1790281	-	TSC_hg19_v1_chr12_-_116714956 BC130422 AF515599 NM_015335	80745	-	TSC_hg19_v1_chr12_-_116715263 AY338463	80955	-	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	337024	+	AK054604|TBX3|6926|T-box 3##NM_005996|TBX3|6926|T-box 3##NM_016569|TBX3|6926|T-box 3##AB051068|TBX5|6910|T-box 5##AF221714|TBX5|6910|T-box 5##NM_000192|TBX5|6910|T-box 5##NM_080717|TBX5|6910|T-box 5##Y09445|TBX5|6910|T-box 5##BC027942|TBX5|6910|T-box 5##NM_181486|TBX5|6910|T-box 5##BC130422|MED13L|23389|mediator complex subunit 13-like##AF515599|MED13L|23389|mediator complex subunit 13-like##NM_015335|MED13L|23389|mediator complex subunit 13-like##AY338463|MED13L|23389|mediator complex subunit 13-like##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173	0.99762	0.0	denovo_WM_7:-14:0.318	denovo_WM_7:-15:0.332
chr1	204491452	204491539	reg1006490.p1	5.510	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	-5885	+	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	-5993	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-27730	-	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	163096	-	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	306317	+	TSC_hg19_v1_chr1_+_204839989 AK308686	348488	+	AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AK308686|NFASC|23114|neurofascin	0.998572	0.0	denovo_WM_7:42:0.494	denovo_WM_7:43:0.494
chr7	104585421	104585547	reg1007442.p1	5.510	+	TSC_hg19_v1_chr7_-_104567089 BC050337	-18394	-	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-616266	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-737053	-	TSC_hg19_v1_chr7_-_104653491 AK124046	67998	-	TSC_hg19_v1_chr7_-_104654062 AK094372	68590	-	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	69018	-	BC050337|LOC723809|723809|uncharacterized LOC723809##AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545	0.99485	0.0	denovo_WM_7:-9:0.271	denovo_WM_7:-10:0.699
chr7	143110941	143111080	reg1009648.p1	5.510	+	EU826604 EU826605 TSC_hg19_v1_chr7_-_143105950 AK290351 AK313263 BC130291 BC144156 M18391 NM_005232	-5070	-	AK130138 TSC_hg19_v1_chr7_+_143079969	-31063	+	TSC_hg19_v1_chr7_+_143079373 U15158	-31637	+	AB529260 BC100938 BC100939 BC100940 BC100941 NM_177437	29535	+	BC101157 BC101158 NM_176883	63955	+	BC043153 BC110410 NM_001008747 BC146818 BC150314	157881	+	EU826604|EPHA1|2041|EPH receptor A1##EU826605|EPHA1|2041|EPH receptor A1##AK290351|EPHA1|2041|EPH receptor A1##AK313263|EPHA1|2041|EPH receptor A1##BC130291|EPHA1|2041|EPH receptor A1##BC144156|EPHA1|2041|EPH receptor A1##M18391|EPHA1|2041|EPH receptor A1##NM_005232|EPHA1|2041|EPH receptor A1##AK130138|ZYX|7791|zyxin##U15158|ZYX|7791|zyxin##BC100938|TAS2R60|338398|taste receptor, type 2, member 60##BC100939|TAS2R60|338398|taste receptor, type 2, member 60##BC100940|TAS2R60|338398|taste receptor, type 2, member 60##BC100941|TAS2R60|338398|taste receptor, type 2, member 60##NM_177437|TAS2R60|338398|taste receptor, type 2, member 60##BC101157|TAS2R41|259287|taste receptor, type 2, member 41##BC101158|TAS2R41|259287|taste receptor, type 2, member 41##NM_176883|TAS2R41|259287|taste receptor, type 2, member 41##BC043153|CTAGE6P|340307|CTAGE family, member 6, pseudogene##BC110410|CTAGE6P|340307|CTAGE family, member 6, pseudogene##NM_001008747|CTAGE15P|441294|CTAGE family, member 15, pseudogene##BC146818|CTAGE15P|441294|CTAGE family, member 15, pseudogene##BC150314|CTAGE15P|441294|CTAGE family, member 15, pseudogene	1.990158	0.0	denovo_WM_7:33:0.210	denovo_WM_7:55:0.213
chr5	164249646	164249750	reg1007148.p1	5.509	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-1317055	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-1319410	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-1362103	+	HE578282 HE578283 NM_001122679	2462144	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	3469123	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	3663776	+	AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	1.988805	0.0	denovo_WM_7:-7:0.236	denovo_WM_7:-8:0.236	denovo_WM_7:-9:0.236	denovo_WM_7:-10:0.236	denovo_WM_7:80:0.518	denovo_WM_7:81:0.462
chr9	33818532	33818682	reg1007202.p1	5.509	+	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	-935	+	TSC_hg19_v1_chr9_+_33817325 BC047584 AK000426 BC004862 AK225880	-1213	+	TSC_hg19_v1_chr9_+_33817170 NM_017811	-1423	+	AB209911 TSC_hg19_v1_chr9_-_34048886 AK302754 AK294952 AK299183 AK303493 CR933678	230270	-	TSC_hg19_v1_chr9_-_34048895 BC111409 AK302335 NM_018449	230309	-	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	307979	-	AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC047584|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000426|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC004862|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK225880|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##NM_017811|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AB209911|UBAP2|55833|ubiquitin associated protein 2##AK302754|UBAP2|55833|ubiquitin associated protein 2##AK294952|UBAP2|55833|ubiquitin associated protein 2##AK299183|UBAP2|55833|ubiquitin associated protein 2##AK303493|UBAP2|55833|ubiquitin associated protein 2##CR933678|UBAP2|55833|ubiquitin associated protein 2##BC111409|UBAP2|55833|ubiquitin associated protein 2##AK302335|UBAP2|55833|ubiquitin associated protein 2##NM_018449|UBAP2|55833|ubiquitin associated protein 2##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12	0.999271	0.0	
chr15	42102866	42103036	reg1009058.p2	5.508	+	AK302482 TSC_hg19_v1_chr15_+_42066879 AL833267 AB011168 BC113983 BC114493 AK091616 AK292414	-36113	+	BC036660 NM_001128608 NM_014994 TSC_hg19_v1_chr15_+_42066666 BX648786	-36293	+	AB011090 TSC_hg19_v1_chr15_+_42052630	-50348	+	TSC_hg19_v1_chr15_+_42120310 AK289833 NM_001114632 NM_001198588 NM_005090 AB209150 AK000814 BC139899 AK000663 AK225503 AK000550 BC067834 AF065215 AK290051 DQ523799 DQ523800 AF121908 BC110415 BC025290 CU692962	17307	+	AK310651 NM_001114633 AK299419	28076	+	AF233523 NM_016642	83323	-	AK302482|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AL833267|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AB011168|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BC113983|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BC114493|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AK091616|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AK292414|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BC036660|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##NM_001128608|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##NM_014994|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BX648786|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AB011090|MGA|23269|MAX gene associated##AK289833|JMJD7|100137047|jumonji domain containing 7##NM_001114632|JMJD7|100137047|jumonji domain containing 7##NM_001198588|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##NM_005090|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AB209150|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AK000814|JMJD7|100137047|jumonji domain containing 7##BC139899|JMJD7|100137047|jumonji domain containing 7##AK000663|JMJD7|100137047|jumonji domain containing 7##AK225503|JMJD7|100137047|jumonji domain containing 7##AK000550|JMJD7|100137047|jumonji domain containing 7##BC067834|JMJD7|100137047|jumonji domain containing 7##AF065215|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AK290051|JMJD7|100137047|jumonji domain containing 7##DQ523799|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##DQ523800|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AF121908|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##BC110415|JMJD7|100137047|jumonji domain containing 7##BC025290|JMJD7|100137047|jumonji domain containing 7##AK310651|PLA2G4B|100137049|phospholipase A2, group IVB (cytosolic)##NM_001114633|PLA2G4B|100137049|phospholipase A2, group IVB (cytosolic)##AK299419|PLA2G4B|100137049|phospholipase A2, group IVB (cytosolic)##AF233523|SPTBN5|51332|spectrin, beta, non-erythrocytic 5##NM_016642|SPTBN5|51332|spectrin, beta, non-erythrocytic 5	1.15535	0.216832	CTCF.p2:40:0.217
chr18	46688091	46688224	reg1009390.p1	5.508	+	AF010193 NM_001190821 NM_005904	-211077	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-211390	-	AK301535 NM_001190822	-212455	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	298894	-	TSC_hg19_v1_chr18_-_47013575 AB097012	325408	-	TSC_hg19_v1_chr18_-_47013599 BC093004	325442	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.0	0.0	
chr19	50579409	50579493	reg1008572.p2	5.508	+	TSC_hg19_v1_chr19_+_50529309 AK292452	-50128	+	TSC_hg19_v1_chr19_+_50529276 AK302293 BC018612 BX648093	-50167	+	AB032967 NM_001006656 NM_015428 TSC_hg19_v1_chr19_+_50529261	-50215	+	DQ890967 DQ894140 AK307321 BC029535 AY358196 AB590459 AK131024 NM_152358	86957	-	TSC_hg19_v1_chr19_+_50691445 AK125082	111990	+	TSC_hg19_v1_chr19_+_50706878 AY165122 BC129803 NM_001077186 NM_001145809 NM_024729 AK307783 AB290169	127440	+	AK292452|ZNF473|25888|zinc finger protein 473##AK302293|ZNF473|25888|zinc finger protein 473##BC018612|ZNF473|25888|zinc finger protein 473##BX648093|ZNF473|25888|zinc finger protein 473##AB032967|ZNF473|25888|zinc finger protein 473##NM_001006656|ZNF473|25888|zinc finger protein 473##NM_015428|ZNF473|25888|zinc finger protein 473##DQ890967|IZUMO2|126123|IZUMO family member 2##DQ894140|IZUMO2|126123|IZUMO family member 2##AK307321|IZUMO2|126123|IZUMO family member 2##BC029535|IZUMO2|126123|IZUMO family member 2##AY358196|IZUMO2|126123|IZUMO family member 2##AK131024|IZUMO2|126123|IZUMO family member 2##NM_152358|IZUMO2|126123|IZUMO family member 2##AK125082|MYH14|79784|myosin, heavy chain 14, non-muscle##AY165122|MYH14|79784|myosin, heavy chain 14, non-muscle##BC129803|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001077186|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001145809|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_024729|MYH14|79784|myosin, heavy chain 14, non-muscle##AK307783|MYH14|79784|myosin, heavy chain 14, non-muscle##AB290169|MYH14|79784|myosin, heavy chain 14, non-muscle	0.999445	0.0	denovo_WM_7:14:0.720
chr2	179270638	179270749	reg1007085.p1	5.508	+	AK093902 AX748360 NM_145739	-85723	+	TSC_hg19_v1_chr2_+_179059238 AB208898 NM_001201480 NM_001201481 NM_001201482 NM_032523 BC052259 AK300389 AF323728 AF392448	-211469	+	AF526533 BC037837 BC066549 NM_152945 TSC_hg19_v1_chr2_+_178977198 AK126575 AB036991 CU688160	-293482	+	TSC_hg19_v1_chr2_+_179278403 BX538254	7711	+	AY251164 NM_001139518 TSC_hg19_v1_chr2_-_179315397 NM_001139517	44725	-	BT007243 CR533525 EU831635 EU831719 AB590648 CU679369 TSC_hg19_v1_chr2_-_179315881 AF072860 AF083033 AK223107 BC009470 AK296019 AL136615 AK290601 NM_003690	45163	-	AK093902|OSBPL6|114880|oxysterol binding protein-like 6##NM_145739|OSBPL6|114880|oxysterol binding protein-like 6##AB208898|OSBPL6|114880|oxysterol binding protein-like 6##NM_001201480|OSBPL6|114880|oxysterol binding protein-like 6##NM_001201481|OSBPL6|114880|oxysterol binding protein-like 6##NM_001201482|OSBPL6|114880|oxysterol binding protein-like 6##NM_032523|OSBPL6|114880|oxysterol binding protein-like 6##BC052259|OSBPL6|114880|oxysterol binding protein-like 6##AK300389|OSBPL6|114880|oxysterol binding protein-like 6##AF323728|OSBPL6|114880|oxysterol binding protein-like 6##AF392448|OSBPL6|114880|oxysterol binding protein-like 6##AF526533|RBM45|129831|RNA binding motif protein 45##BC037837|RBM45|129831|RNA binding motif protein 45##BC066549|RBM45|129831|RNA binding motif protein 45##NM_152945|RBM45|129831|RNA binding motif protein 45##AK126575|RBM45|129831|RNA binding motif protein 45##AB036991|RBM45|129831|RNA binding motif protein 45##AY251164|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##NM_001139518|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##NM_001139517|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##BT007243|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##CR533525|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##EU831635|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##EU831719|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##AF072860|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##AF083033|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##AK223107|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##BC009470|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##AK296019|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##AL136615|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##AK290601|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator##NM_003690|PRKRA|8575|protein kinase, interferon-inducible double stranded RNA dependent activator	0.969225	0.0	denovo_WM_7:12:0.969
chr3	142899395	142899471	reg1001745.p1	5.508	+	BC067737 TSC_hg19_v1_chr3_+_142895211	-4262	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-60782	+	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	-179003	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	667834	-	NM_173552 AK315082	791219	+	TSC_hg19_v1_chr3_+_143690915 BC037293	791557	+	NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58	0.0	0.0	
chr2	172187192	172187324	reg1007394.p1	5.507	+	AK090779 NM_001136554	-99435	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-169759	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-170162	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	103268	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	103504	+	TSC_hg19_v1_chr2_+_172290824 CR933646	103553	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	0.989656	0.0	denovo_WM_7:10:0.904
chr2	197026071	197026251	reg1008245.p2	5.507	+	AB463018 AF327442 AK094515 NM_018897 AB023161	-92666	-	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	-504253	+	BC029413 NM_001127257 CR749813	-504586	+	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	10118	-	TSC_hg19_v1_chr2_-_197036310 NM_004226	10157	-	BC117194 BC117198 AB037722 NM_020760	431131	-	AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##NM_004226|STK17B|9262|serine/threonine kinase 17b##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	1.006285	0.0	
chr2	232532365	232532519	reg1006451.p2	5.507	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-74825	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-137288	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-153360	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	40792	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	40890	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	113483	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	0.995521	0.0	denovo_WM_7:47:0.688
chr2	43793849	43794029	reg1004850.p2	5.507	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-340197	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-340209	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-340594	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	29209	-	TSC_hg19_v1_chr2_+_43864411 BC063310	70474	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	70500	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	0.999811	0.0	denovo_WM_7:32:0.457	denovo_WM_7:33:0.457
chr21	32879127	32879307	reg1000478.p1	5.506	+	AB096964 NM_001099219	-468423	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-625359	-	AJ457063 AB096962 NM_181606	-677229	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	52141	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	152790	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	194901	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.010324	0.0	
chr3	119820425	119820549	reg1002295.p1	5.506	+	TSC_hg19_v1_chr3_+_119813618 BC035247	-6817	+	TSC_hg19_v1_chr3_-_119813270 BC012760 NM_001146156 NM_002093	-7336	-	BC000251 AK290897 TSC_hg19_v1_chr3_-_119812684	-7866	-	NM_001168271 NM_153002	142654	-	TSC_hg19_v1_chr3_-_120068162 AB528173 AM393236 BC013757 NM_001099678	247654	-	TSC_hg19_v1_chr3_-_120169846 AB527652 D89937 BC000055 U06863 AK300356 AK289388 AK291138 AK311050 AK300436 BX647421 AK312261 NM_007085	349350	-	BC012760|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001146156|GSK3B|2932|glycogen synthase kinase 3 beta##NM_002093|GSK3B|2932|glycogen synthase kinase 3 beta##BC000251|GSK3B|2932|glycogen synthase kinase 3 beta##AK290897|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001168271|GPR156|165829|G protein-coupled receptor 156##NM_153002|GPR156|165829|G protein-coupled receptor 156##AM393236|LRRC58|116064|leucine rich repeat containing 58##BC013757|LRRC58|116064|leucine rich repeat containing 58##NM_001099678|LRRC58|116064|leucine rich repeat containing 58##BC000055|FSTL1|11167|follistatin-like 1##U06863|FSTL1|11167|follistatin-like 1##AK300356|FSTL1|11167|follistatin-like 1##AK289388|FSTL1|11167|follistatin-like 1##AK291138|FSTL1|11167|follistatin-like 1##AK311050|FSTL1|11167|follistatin-like 1##AK300436|FSTL1|11167|follistatin-like 1##BX647421|FSTL1|11167|follistatin-like 1##AK312261|FSTL1|11167|follistatin-like 1##NM_007085|FSTL1|11167|follistatin-like 1	0.452749	0.0	denovo_WM_7:18:0.297
chr7	23053960	23054071	reg1009137.p2	5.506	+	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	-265	-	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	-320	-	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-191572	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	91357	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	91509	+	NM_018846	91901	+	BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)	0.0	0.0	
chr15	29600523	29600666	reg1007893.p2	5.505	+	TSC_hg19_v1_chr15_-_29562011 AK056957 AF490510 NM_138704	-38565	-	TSC_hg19_v1_chr15_-_29561989 BC041166 BC053999 BC035458	-38624	-	NM_001130414 NM_005503 AF047348 BC082986	-386745	+	NM_015307	262332	-	AK304758 TSC_hg19_v1_chr15_-_30114336	513748	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	514029	-	AK056957|NDNL2|56160|necdin-like 2##AF490510|NDNL2|56160|necdin-like 2##NM_138704|NDNL2|56160|necdin-like 2##BC041166|NDNL2|56160|necdin-like 2##BC053999|NDNL2|56160|necdin-like 2##BC035458|NDNL2|56160|necdin-like 2##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)	0.991473	0.0	denovo_WM_7:-10:0.316	denovo_WM_7:-11:0.587
chr19	10215343	10215523	reg1008483.p2	5.505	+	AY358276 BC142632 AB054064 NM_031917 AF230330	-2033	-	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-18371	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-18436	+	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	1556	+	NM_002566 BC073827	6771	+	AB528489 BT006889 CR457134 CU678971 DQ890616 DQ896801 AF020833 U96074 TSC_hg19_v1_chr19_-_10230579 AK293374 AF094850 AK309944 AK316040 AK291320 BC000733 BC008469 AK316335 AK315896 AK296377 AK311624 NM_003755	15133	-	AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BT006889|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##CR457134|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##DQ890616|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##DQ896801|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AF020833|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##U96074|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK293374|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AF094850|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK309944|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK316040|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK291320|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##BC000733|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##BC008469|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK316335|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK315896|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK296377|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##NM_003755|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G	0.0	0.0	
chr4	170359309	170359466	reg1007522.p1	5.505	+	TSC_hg19_v1_chr4_-_170192202 NM_020870	-167167	-	AK021429 TSC_hg19_v1_chr4_-_170192108	-167280	-	TSC_hg19_v1_chr4_-_170192099 BC053671	-167340	-	BC015147 BC114491 AB067488 CR933642 AL050385 TSC_hg19_v1_chr4_-_170533735 BC068201 CR936672	174249	-	TSC_hg19_v1_chr4_-_170533762 NM_001199397 NM_001199398 NM_001199399 NM_001199400 NM_012224	174382	-	TSC_hg19_v1_chr4_+_170541683 NM_001243372 NM_001829 NM_173872	182284	+	NM_020870|SH3RF1|57630|SH3 domain containing ring finger 1##AK021429|SH3RF1|57630|SH3 domain containing ring finger 1##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1##BC015147|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC114491|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AB067488|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR933642|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AL050385|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC068201|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR936672|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199397|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199398|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199399|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199400|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_012224|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001243372|CLCN3|1182|chloride channel 3##NM_001829|CLCN3|1182|chloride channel 3##NM_173872|CLCN3|1182|chloride channel 3	0.859523	0.0	denovo_WM_7:36:0.212	denovo_WM_7:39:0.462
chr17	64437610	64437790	reg1005305.p2	5.504	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-138773	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-138950	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-212175	-	AK290171 TSC_hg19_v1_chr17_+_64831234	393535	+	BC101633 NM_145811 BC101607 AF361351 AF458898	435720	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	523189	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.0	0.0	
chr4	99124982	99125097	reg1009487.p1	5.504	+	CU691442 BC036870 NM_174952	-60694	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	-2363781	+	BC034747 BC041156 TSC_hg19_v1_chr4_-_96470369 NM_003728	-2654663	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	57555	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	454720	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	725221	-	BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC034747|UNC5C|8633|unc-5 homolog C (C. elegans)##BC041156|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_003728|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E	0.0	0.0	
chr17	37309027	37309207	reg1007515.p1	5.503	+	TSC_hg19_v1_chr17_-_37307891 NM_020405	-1222	-	TSC_hg19_v1_chr17_-_37307863 BC036059	-1270	-	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	-1385	-	TSC_hg19_v1_chr17_+_37321318 AK093715	12204	+	NM_001143968	13296	-	TSC_hg19_v1_chr17_-_37350083 AB209176	40976	-	NM_020405|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##AK093715|LOC284108|284108|uncharacterized LOC284108##NM_001143968|ARL5C|390790|ADP-ribosylation factor-like 5C##AB209176|CACNB1|782|calcium channel, voltage-dependent, beta 1 subunit	1.968847	0.0	denovo_WM_7:-65:0.294	denovo_WM_7:-68:0.401	denovo_WM_7:-85:0.446	denovo_WM_7:-86:0.401
chr2	160968797	160968949	reg1008526.p1	5.503	+	U17033 U17034 NM_001007267 NM_001195641 NM_007366 TSC_hg19_v1_chr2_-_160919148	-49738	-	BC140823 BC144631 TSC_hg19_v1_chr2_-_160919021	-49894	-	NM_001198759 NM_001198760 NM_002349 TSC_hg19_v1_chr2_-_160761270	-207583	-	AB463075 AM393800 M35198 NM_000888 BC121178 BC143656	87714	-	AK304203 AL831998 TSC_hg19_v1_chr2_-_161056784 AK290300 AK313944	87922	-	BC069687 BC069706 BC069763 BC080620 BC065192 TSC_hg19_v1_chr2_-_161130216	161316	-	U17033|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##U17034|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##NM_001007267|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##NM_001195641|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##NM_007366|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##BC140823|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##BC144631|PLA2R1|22925|phospholipase A2 receptor 1, 180kDa##NM_001198759|LY75-CD302|100526664|LY75-CD302 readthrough##NM_001198760|LY75-CD302|100526664|LY75-CD302 readthrough##NM_002349|LY75|4065|lymphocyte antigen 75##AM393800|ITGB6|3694|integrin, beta 6##M35198|ITGB6|3694|integrin, beta 6##NM_000888|ITGB6|3694|integrin, beta 6##BC121178|ITGB6|3694|integrin, beta 6##BC143656|ITGB6|3694|integrin, beta 6##AK304203|ITGB6|3694|integrin, beta 6##AL831998|ITGB6|3694|integrin, beta 6##AK290300|ITGB6|3694|integrin, beta 6##AK313944|ITGB6|3694|integrin, beta 6##BC069687|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069706|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069763|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC080620|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC065192|RBMS1|5937|RNA binding motif, single stranded interacting protein 1	0.831949	0.0	denovo_WM_7:-21:0.688
chr14	70081389	70081525	reg1007469.p2	5.502	+	TSC_hg19_v1_chr14_+_70078414 AK311470 D87434	-3066	+	AK309302 NM_014734 TSC_hg19_v1_chr14_+_70078312 BC064697	-3147	+	TSC_hg19_v1_chr14_+_69951404 AK126770 NM_001161498 BC146872	-129977	+	TSC_hg19_v1_chr14_+_70233809 BX640605	152349	+	BC095420 TSC_hg19_v1_chr14_+_70233810	152353	+	TSC_hg19_v1_chr14_+_70233856 AK311805 NM_001039465 NM_006925	152377	+	D87434|KIAA0247|9766|KIAA0247##AK309302|KIAA0247|9766|KIAA0247##NM_014734|KIAA0247|9766|KIAA0247##BC064697|KIAA0247|9766|KIAA0247##AK126770|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##NM_001161498|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC146872|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BX640605|SRSF5|6430|serine/arginine-rich splicing factor 5##BC095420|SRSF5|6430|serine/arginine-rich splicing factor 5##AK311805|SRSF5|6430|serine/arginine-rich splicing factor 5##NM_001039465|SRSF5|6430|serine/arginine-rich splicing factor 5##NM_006925|SRSF5|6430|serine/arginine-rich splicing factor 5	0.0	0.0	
chr22	22396572	22396734	reg1010197.p2	5.502	+	TSC_hg19_v1_chr22_+_22385369 AF026922	-11288	+	TSC_hg19_v1_chr22_-_22337185 AK304681 AL833505 AK290997	-59467	-	TSC_hg19_v1_chr22_-_22337164 AF017146 AF053082 BC002432 NM_003935 AK304709	-59506	-	X02422 TSC_hg19_v1_chr22_+_22550141	153476	+	TSC_hg19_v1_chr22_+_22550162 BC023973 AY190823 FJ200244	153525	+	TSC_hg19_v1_chr22_+_22569158 AX810722 AX810705 L29113 AM181372 AY043127 AY043141 AJ408284 AY487924 DQ098689	172611	+	AL833505|TOP3B|8940|topoisomerase (DNA) III beta##AK290997|TOP3B|8940|topoisomerase (DNA) III beta##AF017146|TOP3B|8940|topoisomerase (DNA) III beta##AF053082|TOP3B|8940|topoisomerase (DNA) III beta##BC002432|TOP3B|8940|topoisomerase (DNA) III beta##NM_003935|TOP3B|8940|topoisomerase (DNA) III beta##AK304709|TOP3B|8940|topoisomerase (DNA) III beta##BC023973|IGLV6-57|28778|immunoglobulin lambda variable 6-57	0.9808	0.0	denovo_WM_7:-9:0.466	denovo_WM_7:-10:0.420
chr4	167579685	167579852	reg1009631.p1	5.502	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	-785314	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	-1279611	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	-1330913	+	AK295407 NM_001204353 AK294637 AK295015 AK295281 AK091078 AK295414 AK313042 TSC_hg19_v1_chr4_-_168155646	575843	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	575936	-	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	575972	-	NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##AK295407|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204353|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294637|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295015|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295281|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK091078|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295414|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK313042|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.87432	0.0	denovo_WM_7:-15:0.563	denovo_WM_7:-17:0.253
chr8	38856814	38856994	reg1008330.p2	5.502	+	TSC_hg19_v1_chr8_+_38854524 BC126406 BC143923 BC143924 AF495383	-2358	+	TSC_hg19_v1_chr8_+_38854491 BC027996 NM_003816 U41766	-2428	+	TSC_hg19_v1_chr8_-_38854029 AK314703 AK075155 NM_001024380 NM_001024381 NM_031940 NM_078473	-2872	-	NM_145004 AK300148 AY172952 AY358739 AK313864 BC026169 BC030698 BC034975 AK122608 BC028702 BC030014 BC026085 DQ890910 DQ894061 CU693126	108266	+	NM_001190956 NM_014237 AK313961 AY358321 BC070279 BC034624 CU687082 AJ133004 BC121045 BC121046 AK225744	585213	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	838836	-	BC126406|ADAM9|8754|ADAM metallopeptidase domain 9##BC143923|ADAM9|8754|ADAM metallopeptidase domain 9##BC143924|ADAM9|8754|ADAM metallopeptidase domain 9##AF495383|ADAM9|8754|ADAM metallopeptidase domain 9##BC027996|ADAM9|8754|ADAM metallopeptidase domain 9##NM_003816|ADAM9|8754|ADAM metallopeptidase domain 9##U41766|ADAM9|8754|ADAM metallopeptidase domain 9##AK314703|TM2D2|83877|TM2 domain containing 2##AK075155|TM2D2|83877|TM2 domain containing 2##NM_001024380|TM2D2|83877|TM2 domain containing 2##NM_001024381|TM2D2|83877|TM2 domain containing 2##NM_031940|TM2D2|83877|TM2 domain containing 2##NM_078473|TM2D2|83877|TM2 domain containing 2##NM_145004|ADAM32|203102|ADAM metallopeptidase domain 32##AK300148|ADAM32|203102|ADAM metallopeptidase domain 32##AY172952|ADAM32|203102|ADAM metallopeptidase domain 32##AY358739|ADAM32|203102|ADAM metallopeptidase domain 32##AK313864|ADAM32|203102|ADAM metallopeptidase domain 32##BC026169|ADAM32|203102|ADAM metallopeptidase domain 32##BC030698|ADAM32|203102|ADAM metallopeptidase domain 32##BC034975|ADAM32|203102|ADAM metallopeptidase domain 32##AK122608|ADAM32|203102|ADAM metallopeptidase domain 32##BC028702|ADAM32|203102|ADAM metallopeptidase domain 32##BC030014|ADAM32|203102|ADAM metallopeptidase domain 32##BC026085|ADAM32|203102|ADAM metallopeptidase domain 32##DQ890910|ADAM32|203102|ADAM metallopeptidase domain 32##DQ894061|ADAM32|203102|ADAM metallopeptidase domain 32##NM_001190956|ADAM18|8749|ADAM metallopeptidase domain 18##NM_014237|ADAM18|8749|ADAM metallopeptidase domain 18##AK313961|ADAM18|8749|ADAM metallopeptidase domain 18##AY358321|ADAM18|8749|ADAM metallopeptidase domain 18##BC070279|ADAM18|8749|ADAM metallopeptidase domain 18##BC034624|ADAM18|8749|ADAM metallopeptidase domain 18##AJ133004|ADAM18|8749|ADAM metallopeptidase domain 18##BC121045|ADAM18|8749|ADAM metallopeptidase domain 18##BC121046|ADAM18|8749|ADAM metallopeptidase domain 18##AK225744|ADAM18|8749|ADAM metallopeptidase domain 18##X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2	0.999147	0.0	denovo_WM_7:-48:0.739
chrX	62005998	62006096	reg1009066.p1	5.502	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-4069088	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-4387587	+	NM_007157	-4387779	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	565152	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	642220	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	774820	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	0.0	
chr17_ctg5_hap1	277476	277588	reg1008981.p1	5.501	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998418	0.0	denovo_WM_7:14:0.908
chr3	117023625	117023776	reg1008806.p2	5.501	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-859327	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-859369	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-1681281	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	1729833	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	1729983	-	AK097667 NM_152538 AK292387	1841197	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	0.084631	0.0	
chr5	125786271	125786434	reg1009543.p2	5.501	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	-27165	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	-27509	+	NM_001146319 AK316288 AK300154	-90538	+	NM_001146322 AK303857	14464	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	144504	-	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	150280	+	AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146322|GRAMD3|65983|GRAM domain containing 3##AK303857|GRAMD3|65983|GRAM domain containing 3##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export	0.997332	0.0	
chr11	80135545	80135645	reg1005891.p1	5.500	+	NM_001098816 TSC_hg19_v1_chr11_-_79151755	-983871	-	TSC_hg19_v1_chr11_-_78285888 AK315425 NM_001243251 NM_024678	-1849700	-	BC007800 TSC_hg19_v1_chr11_-_78285839 AK056980	-1849803	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	2309303	-	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	2475922	-	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	2477179	+	NM_001098816|ODZ4|26011|odz, odd Oz/ten-m homolog 4 (Drosophila)##AK315425|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_001243251|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##NM_024678|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##BC007800|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##AK056980|NARS2|79731|asparaginyl-tRNA synthetase 2, mitochondrial (putative)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82	0.99196	0.0	denovo_WM_7:30:0.350	denovo_WM_7:31:0.616
chr13	45992641	45992821	reg1002494.p1	5.500	+	TSC_hg19_v1_chr13_-_45992486 BC132739 BC136760 BC144401 AK094133 AK095465 AK302967 NM_001010875	-237	-	TSC_hg19_v1_chr13_-_45992456 BC129808	-271	-	AF318337 TSC_hg19_v1_chr13_+_45915726 AK124332	-77118	+	TSC_hg19_v1_chr13_+_46039081 NM_031431 AF349676 AF332595 AK026305 AK225466 AK225952 BX648211 AK294959 AK304248 AK314387 BC038953 CU691622	46366	+	BC131494 AK057244 NM_182542	197134	-	AK093129 AX747942 NM_152719	283714	+	BC132739|SLC25A30|253512|solute carrier family 25, member 30##BC136760|SLC25A30|253512|solute carrier family 25, member 30##BC144401|SLC25A30|253512|solute carrier family 25, member 30##AK094133|SLC25A30|253512|solute carrier family 25, member 30##AK095465|SLC25A30|253512|solute carrier family 25, member 30##AK302967|SLC25A30|253512|solute carrier family 25, member 30##NM_001010875|SLC25A30|253512|solute carrier family 25, member 30##BC129808|SLC25A30|253512|solute carrier family 25, member 30##AF318337|LOC100190939|100190939|uncharacterized LOC100190939##AK124332|LOC100190939|100190939|uncharacterized LOC100190939##NM_031431|COG3|83548|component of oligomeric golgi complex 3##AF349676|COG3|83548|component of oligomeric golgi complex 3##AF332595|COG3|83548|component of oligomeric golgi complex 3##AK026305|COG3|83548|component of oligomeric golgi complex 3##AK225466|COG3|83548|component of oligomeric golgi complex 3##AK225952|COG3|83548|component of oligomeric golgi complex 3##BX648211|COG3|83548|component of oligomeric golgi complex 3##AK294959|COG3|83548|component of oligomeric golgi complex 3##AK304248|COG3|83548|component of oligomeric golgi complex 3##AK314387|COG3|83548|component of oligomeric golgi complex 3##BC038953|COG3|83548|component of oligomeric golgi complex 3##BC131494|FAM194B|220081|family with sequence similarity 194, member B##AK057244|FAM194B|220081|family with sequence similarity 194, member B##NM_182542|FAM194B|220081|family with sequence similarity 194, member B##AK093129|SPERT|220082|spermatid associated##NM_152719|SPERT|220082|spermatid associated	0.0	0.0	
chr1	93205446	93205626	reg1008886.p1	5.500	+	U67369 NM_005263 TSC_hg19_v1_chr1_-_92952458	-253086	-	BC032751 TSC_hg19_v1_chr1_-_92951630 NM_001127216	-253921	-	TSC_hg19_v1_chr1_-_92949508 AK123009	-256004	-	AB449875 AB587441 AF008915 AF042345 NM_005665	52419	-	TSC_hg19_v1_chr1_+_93297596 NM_000969 AK092963 AK095815 AK314720 AB055762	92028	+	TSC_hg19_v1_chr1_+_93297612 BC109370	92069	+	U67369|GFI1|2672|growth factor independent 1 transcription repressor##NM_005263|GFI1|2672|growth factor independent 1 transcription repressor##BC032751|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127216|GFI1|2672|growth factor independent 1 transcription repressor##AK123009|GFI1|2672|growth factor independent 1 transcription repressor##AB449875|EVI5|7813|ecotropic viral integration site 5##AF008915|EVI5|7813|ecotropic viral integration site 5##NM_005665|EVI5|7813|ecotropic viral integration site 5##NM_000969|RPL5|6125|ribosomal protein L5##AK092963|RPL5|6125|ribosomal protein L5##AK095815|RPL5|6125|ribosomal protein L5##AK314720|RPL5|6125|ribosomal protein L5##AB055762|RPL5|6125|ribosomal protein L5##BC109370|RPL5|6125|ribosomal protein L5	0.998955	0.0	denovo_WM_7:3:0.462	denovo_WM_7:4:0.518
chr3	186715503	186715683	reg1008423.p2	5.500	+	U67847 TSC_hg19_v1_chr3_+_186714361	-1245	+	X17247 TSC_hg19_v1_chr3_+_186648632	-67016	+	TSC_hg19_v1_chr3_+_186648314 NM_173216 NM_173217	-67284	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	24079	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	141663	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	199749	+	X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_173216|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_173217|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1	0.99959	0.0	denovo_WM_7:-36:0.215	denovo_WM_7:-39:0.430
chr8	613657	613773	reg1002026.p1	5.500	+	NM_175075	-118385	-	TSC_hg19_v1_chr8_-_494835 AY194292 FJ381685 BC136248 BC136249	-118800	-	TSC_hg19_v1_chr8_+_356957 BC050393	-256731	+	TSC_hg19_v1_chr8_-_681182 EU832095 EU832187 AF161437	67465	-	TSC_hg19_v1_chr8_-_681204 AK297476	67496	-	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	67516	-	NM_175075|C8orf42|157695|chromosome 8 open reading frame 42##AY194292|C8orf42|157695|chromosome 8 open reading frame 42##BC136248|C8orf42|157695|chromosome 8 open reading frame 42##BC136249|C8orf42|157695|chromosome 8 open reading frame 42##BC050393|FBXO25|26260|F-box protein 25##EU832095|ERICH1|157697|glutamate-rich 1##EU832187|ERICH1|157697|glutamate-rich 1##AF161437|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1	0.997104	0.0	denovo_WM_7:51:0.887
chr14	64967040	64967137	reg1006247.p1	5.499	+	AK315336 NM_004857 BC057229	-34828	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	-111992	+	AK302747 NM_005956	-112335	+	TSC_hg19_v1_chr14_-_64970524 NM_006977 BC035804	3355	-	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	4170	+	TSC_hg19_v1_chr14_+_64971443 AB023214	4355	+	AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5##AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_006977|ZBTB25|7597|zinc finger and BTB domain containing 25##BC035804|ZBTB25|7597|zinc finger and BTB domain containing 25##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1##AB023214|ZBTB1|22890|zinc finger and BTB domain containing 1	1.496362	0.0	denovo_WM_7:-16:0.296
chr16	3074419	3074589	reg1007404.p2	5.499	+	BC064026 BC065514 NM_001002017 NM_001002018 NM_017885	-249	-	TSC_hg19_v1_chr16_+_3074062 AK075330 BC050674	-428	+	TSC_hg19_v1_chr16_+_3074053 AK314086	-449	+	BC128602 NM_001103175	11037	-	AJ272137 NM_022468 AJ239053 AB042328 AF145442 AF185270	22283	+	BC026114 BC045731 TSC_hg19_v1_chr16_-_3109353	34853	-	BC064026|HCFC1R1|54985|host cell factor C1 regulator 1 (XPO1 dependent)##BC065514|HCFC1R1|54985|host cell factor C1 regulator 1 (XPO1 dependent)##NM_001002017|HCFC1R1|54985|host cell factor C1 regulator 1 (XPO1 dependent)##NM_001002018|HCFC1R1|54985|host cell factor C1 regulator 1 (XPO1 dependent)##NM_017885|HCFC1R1|54985|host cell factor C1 regulator 1 (XPO1 dependent)##AK075330|THOC6|79228|THO complex 6 homolog (Drosophila)##BC050674|THOC6|79228|THO complex 6 homolog (Drosophila)##AK314086|THOC6|79228|THO complex 6 homolog (Drosophila)##BC128602|CCDC64B|146439|coiled-coil domain containing 64B##NM_001103175|CCDC64B|146439|coiled-coil domain containing 64B##AJ272137|MMP25|64386|matrix metallopeptidase 25##NM_022468|MMP25|64386|matrix metallopeptidase 25##AJ239053|MMP25|64386|matrix metallopeptidase 25##AB042328|MMP25|64386|matrix metallopeptidase 25##AF145442|MMP25|64386|matrix metallopeptidase 25##AF185270|MMP25|64386|matrix metallopeptidase 25##BC026114|LOC100507419|100507419|uncharacterized LOC100507419##BC045731|LOC100507419|100507419|uncharacterized LOC100507419	0.99913	0.0	denovo_WM_7:103:0.739
chr21	46789939	46790045	reg1007544.p1	5.499	+	TSC_hg19_v1_chr21_+_46707955 BC022830 BC033767	-82017	+	TSC_hg19_v1_chr21_-_46707808 BC064623 AJ575591 AL110285 AB023175 AJ302079 AJ302080 AY066015 AK294966 AK290732 AK298080 NM_015227 NM_133635	-82191	-	TSC_hg19_v1_chr21_+_46572480 FJ169506	-217494	+	TSC_hg19_v1_chr21_+_46825079 AK130835 AF018082 NM_130445 BC063833	35076	+	AB590554 TSC_hg19_v1_chr21_+_46825311	35309	+	AF018081 NM_030582 AK311062 TSC_hg19_v1_chr21_+_46875435	85426	+	BC022830|LOC642852|642852|uncharacterized LOC642852##BC033767|LOC642852|642852|uncharacterized LOC642852##BC064623|POFUT2|23275|protein O-fucosyltransferase 2##AJ575591|POFUT2|23275|protein O-fucosyltransferase 2##AL110285|POFUT2|23275|protein O-fucosyltransferase 2##AB023175|POFUT2|23275|protein O-fucosyltransferase 2##AJ302079|POFUT2|23275|protein O-fucosyltransferase 2##AJ302080|POFUT2|23275|protein O-fucosyltransferase 2##AY066015|POFUT2|23275|protein O-fucosyltransferase 2##AK294966|POFUT2|23275|protein O-fucosyltransferase 2##AK290732|POFUT2|23275|protein O-fucosyltransferase 2##AK298080|POFUT2|23275|protein O-fucosyltransferase 2##NM_015227|POFUT2|23275|protein O-fucosyltransferase 2##NM_133635|POFUT2|23275|protein O-fucosyltransferase 2##FJ169506|ADARB1|104|adenosine deaminase, RNA-specific, B1##AK130835|COL18A1|80781|collagen, type XVIII, alpha 1##AF018082|COL18A1|80781|collagen, type XVIII, alpha 1##NM_130445|COL18A1|80781|collagen, type XVIII, alpha 1##BC063833|COL18A1|80781|collagen, type XVIII, alpha 1##AF018081|COL18A1|80781|collagen, type XVIII, alpha 1##NM_030582|COL18A1|80781|collagen, type XVIII, alpha 1	0.912771	0.0	denovo_WM_7:-38:0.582	denovo_WM_7:-47:0.247
chr5	37680202	37680315	reg1009280.p1	5.499	+	TSC_hg19_v1_chr5_+_37379419 AL512685 BC009648 NM_018034 BC025315 AK001095	-300828	+	TSC_hg19_v1_chr5_+_37379386 AK310901 AK291179 BX537655	-300873	+	TSC_hg19_v1_chr5_-_37371206 AK297143	-309044	-	AJ001899 NM_199231	155334	-	AJ001897 AJ001898 NM_001190468 NM_001190469	155670	-	AF053748 NM_000514	159523	-	AL512685|WDR70|55100|WD repeat domain 70##BC009648|WDR70|55100|WD repeat domain 70##NM_018034|WDR70|55100|WD repeat domain 70##BC025315|WDR70|55100|WD repeat domain 70##AK001095|WDR70|55100|WD repeat domain 70##AK310901|WDR70|55100|WD repeat domain 70##AK291179|WDR70|55100|WD repeat domain 70##BX537655|WDR70|55100|WD repeat domain 70##AK297143|NUP155|9631|nucleoporin 155kDa##AJ001899|GDNF|2668|glial cell derived neurotrophic factor##NM_199231|GDNF|2668|glial cell derived neurotrophic factor##AJ001897|GDNF|2668|glial cell derived neurotrophic factor##AJ001898|GDNF|2668|glial cell derived neurotrophic factor##NM_001190468|GDNF|2668|glial cell derived neurotrophic factor##NM_001190469|GDNF|2668|glial cell derived neurotrophic factor##AF053748|GDNF|2668|glial cell derived neurotrophic factor##NM_000514|GDNF|2668|glial cell derived neurotrophic factor	0.99096	0.0	denovo_WM_7:8:0.745
chr1	27769424	27769561	reg1007776.p1	5.498	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-37308	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-50326	+	BC137466 AY358761 NM_207397	-59700	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	47108	-	TSC_hg19_v1_chr1_-_27816670 BC012329	47179	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	47184	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	0.997229	0.0	
chr8	119519977	119520157	reg1007994.p1	5.498	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-396106	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-987025	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-987109	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	114058	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	114140	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	444153	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.0	0.0	
chr10	18791625	18791805	reg1007797.p2	5.497	+	NM_201570 AK299873 AK295113	-102152	+	AK310943 NM_201590	-162102	+	NM_000724 AB208917 U95019	-242075	+	AK074323 BC035778 NM_182543	148817	-	BC033534 TSC_hg19_v1_chr10_-_18948215	156482	-	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	156706	+	NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B	1.994117	0.0	denovo_WM_7:-68:0.284	denovo_WM_7:-69:0.237	denovo_WM_7:-87:0.237	denovo_WM_7:-88:0.285
chr14	89896930	89897062	reg1001460.p1	5.497	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-13586	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-18220	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-606003	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	188599	-	BC001787 BX247991 AK298930 AK094740 NM_145231	524064	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	525250	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.498305	0.0	denovo_WM_7:27:0.318
chr9	5530047	5530126	reg1007457.p2	5.497	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-19423	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-79579	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-92206	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	99041	+	BC036853 TSC_hg19_v1_chr9_-_5630098	100004	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	302865	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.0	0.0	
chr17	1625414	1625564	reg1009761.p2	5.496	+	AK298567 NM_001163673 NM_152348 AK091136 AX746799 BC114519 BC114568	-5634	+	BC119720 BC119721 TSC_hg19_v1_chr17_-_1619503 BX648321 BX640650	-6001	-	NM_001164407	-11828	-	AK127946 NM_001163811 TSC_hg19_v1_chr17_+_1628006	2431	+	TSC_hg19_v1_chr17_+_1628049 NM_001163809	2589	+	TSC_hg19_v1_chr17_+_1631333 AL834379 BC092513	5876	+	AK298567|WDR81|124997|WD repeat domain 81##NM_001163673|WDR81|124997|WD repeat domain 81##NM_152348|WDR81|124997|WD repeat domain 81##AK091136|WDR81|124997|WD repeat domain 81##BC114519|WDR81|124997|WD repeat domain 81##BC114568|WDR81|124997|WD repeat domain 81##BC119720|MIR22HG|84981|MIR22 host gene (non-protein coding)##BC119721|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX648321|MIR22HG|84981|MIR22 host gene (non-protein coding)##BX640650|MIR22HG|84981|MIR22 host gene (non-protein coding)##NM_001164407|TLCD2|727910|TLC domain containing 2##AK127946|WDR81|124997|WD repeat domain 81##NM_001163811|WDR81|124997|WD repeat domain 81##NM_001163809|WDR81|124997|WD repeat domain 81##AL834379|WDR81|124997|WD repeat domain 81##BC092513|WDR81|124997|WD repeat domain 81	0.0	0.0	
chr1	89150781	89150961	reg1003004.p4	5.496	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	-776	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-1353456	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-1353546	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	206340	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	206402	-	TSC_hg19_v1_chr1_-_89458288 AL833593 BC012942 CR627392 AK301326 AK315917 AK057176 AY028624	307488	-	NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##BC065818|LMO4|8543|LIM domain only 4##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB##AL833593|CCBL2|56267|cysteine conjugate-beta lyase 2##BC012942|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##CR627392|CCBL2|56267|cysteine conjugate-beta lyase 2##AK301326|CCBL2|56267|cysteine conjugate-beta lyase 2##AK315917|CCBL2|56267|cysteine conjugate-beta lyase 2##AK057176|CCBL2|56267|cysteine conjugate-beta lyase 2##AY028624|CCBL2|56267|cysteine conjugate-beta lyase 2	1.820336	0.011127	denovo_WM_7:53:0.531	denovo_WM_7:72:0.442	denovo_WM_7:73:0.379
chr2	199563319	199563460	reg1010105.p1	5.496	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	-894019	+	NM_197970 AK302817	-912403	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-913349	-	TSC_hg19_v1_chr2_-_200213802 AK025127	650461	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	757413	-	TSC_hg19_v1_chr2_-_200322238 AJ438951	758861	-	AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2##AJ438951|SATB2|23314|SATB homeobox 2	1.5401	0.0	denovo_WM_7:-27:0.506	denovo_WM_7:-42:0.408
chr18	10728964	10729098	reg1008024.p1	5.495	+	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-202934	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-202975	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	-203003	+	NM_022068	419729	-	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	960181	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	1022484	+	CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	0.988205	0.0	
chr19	2598037	2598218	reg1004983.p2	5.495	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-121889	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-141167	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-141191	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	104568	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	104615	-	AK124445 TSC_hg19_v1_chr19_-_2717420	119222	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.0	0.0	
chr10	83608347	83608464	reg1010153.p2	5.494	+	AK123978 NM_001145719	-1307831	+	AK123885 NM_207372	-1310748	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-1394301	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	26677	+	DQ857894 NM_001165973	29037	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	2290852	+	AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##BC002920|TSPAN14|81619|tetraspanin 14##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein	1.491685	0.0	denovo_WM_7:-24:0.464	denovo_WM_7:-25:0.465	denovo_WM_7:-40:0.372
chr15	101496516	101496696	reg1008044.p2	5.494	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-37094	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-37132	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-76535	+	AB071402 TSC_hg19_v1_chr15_-_101791795	295130	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	295529	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	321057	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	3.141027	0.0	denovo_WM_7:13:0.229	denovo_WM_7:-21:0.415	denovo_WM_7:-22:0.523	denovo_WM_7:46:0.230	denovo_WM_7:49:0.471	denovo_WM_7:64:0.309	denovo_WM_7:65:0.497
chr6	14957917	14958097	reg1009306.p1	5.494	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-839985	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-840102	+	NM_001251901	-840521	+	TSC_hg19_v1_chr6_+_15245702 AK302624	287710	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	288405	+	BC033996 TSC_hg19_v1_chr6_-_15248900	290894	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	1.122679	0.0	denovo_WM_7:-25:0.230	denovo_WM_7:-26:0.230	denovo_WM_7:-27:0.230	denovo_WM_7:-28:0.230
chr21	32592031	32592186	reg1008663.p1	5.493	+	AB096964 NM_001099219	-181314	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-338250	-	AJ457063 AB096962 NM_181606	-390120	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	339250	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	439899	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	482010	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.896173	0.0	denovo_WM_7:-52:0.293
chr7	76983915	76984087	reg1007684.p1	5.493	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-154865	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-232055	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-727454	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	61717	-	TSC_hg19_v1_chr7_+_77166392 BC050008	182377	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	182805	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.995903	0.0	denovo_WM_7:1:0.815
chr15	60861063	60861243	reg1004015.p1	5.492	+	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	-89879	-	AB587463 BC068065 BC009564 BC021114 BC052567 BC001388 BC013843 D00017 TSC_hg19_v1_chr15_-_60690186 AK222542 BX640598 AK297923 BC015834 BC023990 BC066955 BC093056 D28364 NM_001002857 NM_001002858 NM_001136015 NM_004039 AK309956 BC016774	-170992	-	TSC_hg19_v1_chr15_+_60296509 AK314075	-564604	+	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	23526	-	U04899 U04898 NM_002943 NM_134260	58532	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	660271	-	BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##BC068065|ANXA2|302|annexin A2##BC009564|ANXA2|302|annexin A2##BC021114|ANXA2|302|annexin A2##BC052567|ANXA2|302|annexin A2##BC001388|ANXA2|302|annexin A2##BC013843|ANXA2|302|annexin A2##D00017|ANXA2|302|annexin A2##AK222542|ANXA2|302|annexin A2##BX640598|ANXA2|302|annexin A2##AK297923|ANXA2|302|annexin A2##BC015834|ANXA2|302|annexin A2##BC023990|ANXA2|302|annexin A2##BC066955|ANXA2|302|annexin A2##BC093056|ANXA2|302|annexin A2##D28364|ANXA2|302|annexin A2##NM_001002857|ANXA2|302|annexin A2##NM_001002858|ANXA2|302|annexin A2##NM_001136015|ANXA2|302|annexin A2##NM_004039|ANXA2|302|annexin A2##BC016774|ANXA2|302|annexin A2##AK314075|FOXB1|27023|forkhead box B1##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A	0.997573	0.0	
chr17	3929700	3929843	reg1010473.p1	5.492	+	AB462957 DQ893317 EU176809 Z69881 TSC_hg19_v1_chr17_-_3867744 AF068220 BC035729 AK292716 NM_005173 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958	-62070	-	NM_002558	-109812	-	X83688 U45448 BC044657 BC027949 TSC_hg19_v1_chr17_-_3819762 AK310981 AK313264 AF020498	-110023	-	AB384472 TSC_hg19_v1_chr17_-_4046240	116444	-	TSC_hg19_v1_chr17_-_4046246 AB007859 BC151836 NM_015113	116481	-	TSC_hg19_v1_chr17_-_4046308 AK127482	116539	-	DQ893317|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##EU176809|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##Z69881|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AF068220|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##BC035729|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AK292716|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_005173|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174953|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174954|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174955|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174956|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174957|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174958|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_002558|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##X83688|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##U45448|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC044657|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC027949|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AK313264|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AF020498|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AB007859|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##BC151836|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##NM_015113|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##AK127482|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1	0.943523	0.0	denovo_WM_7:53:0.577
chr18	21525869	21526020	reg1005965.p1	5.492	+	TSC_hg19_v1_chr18_+_21452983 NM_000227 NM_001127718 X85107 X84392 AY327114 L34155	-72933	+	TSC_hg19_v1_chr18_+_21269563 BC093406 NM_001127717 NM_198129 AY327115 AY327116	-256357	+	TSC_hg19_v1_chr18_+_21269416 AK096422	-256530	+	AK091080 AX746769 NM_153211 BC121034 BC121035	46850	+	TSC_hg19_v1_chr18_+_21594449 BC016833 NM_001135993 NM_001243425	68455	+	TSC_hg19_v1_chr18_+_21594754 AK074875	68812	+	NM_000227|LAMA3|3909|laminin, alpha 3##NM_001127718|LAMA3|3909|laminin, alpha 3##X85107|LAMA3|3909|laminin, alpha 3##X84392|LAMA3|3909|laminin, alpha 3##AY327114|LAMA3|3909|laminin, alpha 3##L34155|LAMA3|3909|laminin, alpha 3##BC093406|LAMA3|3909|laminin, alpha 3##NM_001127717|LAMA3|3909|laminin, alpha 3##NM_198129|LAMA3|3909|laminin, alpha 3##AY327115|LAMA3|3909|laminin, alpha 3##AY327116|LAMA3|3909|laminin, alpha 3##AK096422|LAMA3|3909|laminin, alpha 3##AK091080|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_153211|TTC39C|125488|tetratricopeptide repeat domain 39C##BC121034|TTC39C|125488|tetratricopeptide repeat domain 39C##BC121035|TTC39C|125488|tetratricopeptide repeat domain 39C##BC016833|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_001135993|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_001243425|TTC39C|125488|tetratricopeptide repeat domain 39C##AK074875|TTC39C|125488|tetratricopeptide repeat domain 39C	0.0	0.0	
chr19	18631218	18631354	reg1009580.p1	5.492	+	AK296022 TSC_hg19_v1_chr19_-_18548975 AK092179 AX747394 NM_001170938 NM_016368	-82246	-	CU676344 DQ893465 DQ896336 AK001325 TSC_hg19_v1_chr19_-_18548942 AK093461 NM_001170939 AF207640 BC018952 AF086921 BC017189 BC066902 AF220530 AK021526	-82410	-	AL137749 NM_001253389	-83168	-	AB208794 TSC_hg19_v1_chr19_-_18632875 AK293105 AK225481 U16282	1580	-	TSC_hg19_v1_chr19_-_18632948 BC049195 NM_006532	1641	-	TSC_hg19_v1_chr19_-_18653874 AK300571	22491	-	AK296022|ISYNA1|51477|inositol-3-phosphate synthase 1##AK092179|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001170938|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_016368|ISYNA1|51477|inositol-3-phosphate synthase 1##DQ893465|ISYNA1|51477|inositol-3-phosphate synthase 1##DQ896336|ISYNA1|51477|inositol-3-phosphate synthase 1##AK001325|ISYNA1|51477|inositol-3-phosphate synthase 1##AK093461|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001170939|ISYNA1|51477|inositol-3-phosphate synthase 1##AF207640|ISYNA1|51477|inositol-3-phosphate synthase 1##BC018952|ISYNA1|51477|inositol-3-phosphate synthase 1##AF086921|ISYNA1|51477|inositol-3-phosphate synthase 1##BC066902|ISYNA1|51477|inositol-3-phosphate synthase 1##AF220530|ISYNA1|51477|inositol-3-phosphate synthase 1##AK021526|ISYNA1|51477|inositol-3-phosphate synthase 1##AL137749|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001253389|ISYNA1|51477|inositol-3-phosphate synthase 1##AB208794|ELL|8178|elongation factor RNA polymerase II##AK293105|ELL|8178|elongation factor RNA polymerase II##AK225481|ELL|8178|elongation factor RNA polymerase II##U16282|ELL|8178|elongation factor RNA polymerase II##BC049195|ELL|8178|elongation factor RNA polymerase II##NM_006532|ELL|8178|elongation factor RNA polymerase II##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa	0.142695	0.0	
chr3	172194913	172195093	reg1007441.p2	5.492	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	-28780	-	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-436666	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-437545	+	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	46175	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	233887	-	TSC_hg19_v1_chr3_+_172468557 BC070038 AK314581 AY376439 AK308391	273521	+	AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC070038|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK314581|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AY376439|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK308391|ECT2|1894|epithelial cell transforming sequence 2 oncogene	0.999451	0.0	denovo_WM_7:-81:0.720
chr6	71533518	71533620	reg1006695.p1	5.492	+	TSC_hg19_v1_chr6_+_71377620 AK315579 BC028074 BC008672 AK303387 BC036123 AK023221 AY055003 AY055004 AK222711 AK290448 CU688386	-155914	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	-156046	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	-256944	+	AB075843 NM_080742	133194	-	NM_024576 TSC_hg19_v1_chr6_+_71998479	464917	+	TSC_hg19_v1_chr6_+_71998513 BC018688	464941	+	AK315579|SMAP1|60682|small ArfGAP 1##BC028074|SMAP1|60682|small ArfGAP 1##BC008672|SMAP1|60682|small ArfGAP 1##AK303387|SMAP1|60682|small ArfGAP 1##BC036123|SMAP1|60682|small ArfGAP 1##AK023221|SMAP1|60682|small ArfGAP 1##AY055003|SMAP1|60682|small ArfGAP 1##AY055004|SMAP1|60682|small ArfGAP 1##AK222711|SMAP1|60682|small ArfGAP 1##AK290448|SMAP1|60682|small ArfGAP 1##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1##BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##AB075843|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_080742|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1	1.775806	0.0	denovo_WM_7:20:0.849	denovo_WM_7:-102:0.649
chr7	74032157	74032283	reg1007573.p1	5.492	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-163785	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-163912	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-164056	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	39801	+	TSC_hg19_v1_chr7_+_74072046 BC070484	39824	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	39902	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.996824	0.0	
chr12	45912344	45912492	reg1009104.p2	5.491	+	AL832340 NM_001142678	-225953	+	TSC_hg19_v1_chr12_+_45609916 BC098410	-302511	+	TSC_hg19_v1_chr12_+_45609867 AK302819 NM_001142680	-302547	+	TSC_hg19_v1_chr12_-_46121280 BC037237 BC008245	208855	-	TSC_hg19_v1_chr12_-_46121531 BC047417	209112	-	TSC_hg19_v1_chr12_+_46123488 AK127872	211065	+	AL832340|ANO6|196527|anoctamin 6##NM_001142678|ANO6|196527|anoctamin 6##BC098410|ANO6|196527|anoctamin 6##AK302819|ANO6|196527|anoctamin 6##NM_001142680|ANO6|196527|anoctamin 6##BC037237|LOC400027|400027|uncharacterized LOC400027##BC008245|LOC400027|400027|uncharacterized LOC400027##BC047417|LOC400027|400027|uncharacterized LOC400027##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)	0.0	0.019621	
chr15	44995836	44995949	reg1008699.p1	5.491	+	BC036924 NM_001145112	-26807	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	-40012	-	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	-40048	-	AK130783 TSC_hg19_v1_chr15_-_45003540	7654	-	TSC_hg19_v1_chr15_+_45003710 NM_004048 AK303560 AK315776 S82297 S82300 S54761 BC032589 BC064910 X07621 AY007153 AB021288 AB463439 AY187687 CR457066 DQ839493 DQ839494 DQ884406 DQ890551 DQ893711 V00567	7829	+	AK311550 TSC_hg19_v1_chr15_+_45021275 DQ232883	25361	+	BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_004048|B2M|567|beta-2-microglobulin##AK303560|B2M|567|beta-2-microglobulin##AK315776|B2M|567|beta-2-microglobulin##S82297|B2M|567|beta-2-microglobulin##S82300|B2M|567|beta-2-microglobulin##S54761|B2M|567|beta-2-microglobulin##BC032589|B2M|567|beta-2-microglobulin##BC064910|B2M|567|beta-2-microglobulin##X07621|B2M|567|beta-2-microglobulin##AY007153|B2M|567|beta-2-microglobulin##AB021288|B2M|567|beta-2-microglobulin##AY187687|B2M|567|beta-2-microglobulin##CR457066|B2M|567|beta-2-microglobulin##DQ839493|B2M|567|beta-2-microglobulin##DQ839494|B2M|567|beta-2-microglobulin##DQ884406|B2M|567|beta-2-microglobulin##DQ890551|B2M|567|beta-2-microglobulin##DQ893711|B2M|567|beta-2-microglobulin##V00567|B2M|567|beta-2-microglobulin##DQ232883|TRIM69|140691|tripartite motif containing 69	1.990631	0.0	denovo_WM_7:35:0.563	denovo_WM_7:36:0.432	denovo_WM_7:50:0.484	denovo_WM_7:51:0.511
chr2	43022529	43022699	reg1001207.p1	5.491	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	-2863	-	AY158687 AB528920 AB083055 BC063549 NM_148962	-31314	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-226717	+	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	430731	-	TSC_hg19_v1_chr2_-_43453736 BC020369	431116	-	TSC_hg19_v1_chr2_-_43453744 NM_006887	431128	-	CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.832786	0.0	denovo_WM_7:15:0.316	denovo_WM_7:16:0.517
chr5	10369016	10369164	reg1009229.p1	5.491	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-15082	+	TSC_hg19_v1_chr5_+_10353836 AK000970 BC136461 BC136462 BC142679 BC142694	-15226	+	TSC_hg19_v1_chr5_+_10353827 AK300034 BC111494 AB011169 AK296585 AK299339 NM_005885	-15276	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	72913	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	73062	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	195352	+	AK000970|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136461|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136462|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142679|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142694|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK300034|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC111494|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AB011169|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK296585|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK299339|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_005885|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B	0.999813	0.0	denovo_WM_7:-9:0.457	denovo_WM_7:-10:0.457
chr5	58419471	58419617	reg1006812.p1	5.491	+	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	-84166	-	BC036319 NM_001197223	-123786	-	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-540625	+	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	152386	-	AB528028 AF536977 NM_001197219 TSC_hg19_v1_chr5_-_58652809	233199	-	U50159 NM_006203 L20970	462755	-	U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF536977|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197219|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50159|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_006203|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##L20970|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.0	0.0	
chr12	49528238	49528339	reg1009272.p1	5.490	+	TSC_hg19_v1_chr12_-_49525284 NM_006082	-3001	-	BC001128 BC009512 BC009314 BC006379 BC006481 BC010494 BC011572 BC018948 BC021564 BC009509 BC009513 DQ400107 BC000696 BC071904 TSC_hg19_v1_chr12_-_49525179 BC030820 AK026516 AK026632 AK057773 AK094717 AK098357 AK098635 AK098771 AK289354	-3117	-	BC015883 TSC_hg19_v1_chr12_-_49525141 BC017004 BC008659 K00558	-3150	-	TSC_hg19_v1_chr12_-_49582309 AK289483	54096	-	TSC_hg19_v1_chr12_-_49582864 BC006468 BC050637 AF141347 AK057842 AK297775 BC057823 NM_006009 AK298838	54544	-	TSC_hg19_v1_chr12_+_49658864 D28390 AK223024 BC005946 NM_032704	130575	+	NM_006082|TUBA1B|10376|tubulin, alpha 1b##BC001128|TUBA1B|10376|tubulin, alpha 1b##BC009512|TUBA1B|10376|tubulin, alpha 1b##BC009314|TUBA1B|10376|tubulin, alpha 1b##BC006379|TUBA1B|10376|tubulin, alpha 1b##BC006481|TUBA1B|10376|tubulin, alpha 1b##BC010494|TUBA1B|10376|tubulin, alpha 1b##BC011572|TUBA1B|10376|tubulin, alpha 1b##BC018948|TUBA1B|10376|tubulin, alpha 1b##BC021564|TUBA1B|10376|tubulin, alpha 1b##BC009509|TUBA1B|10376|tubulin, alpha 1b##BC009513|TUBA1B|10376|tubulin, alpha 1b##DQ400107|TUBA1B|10376|tubulin, alpha 1b##BC000696|TUBA1B|10376|tubulin, alpha 1b##BC071904|TUBA1B|10376|tubulin, alpha 1b##BC030820|TUBA1B|10376|tubulin, alpha 1b##AK026516|TUBA1B|10376|tubulin, alpha 1b##AK026632|TUBA1B|10376|tubulin, alpha 1b##AK057773|TUBA1B|10376|tubulin, alpha 1b##AK094717|TUBA1B|10376|tubulin, alpha 1b##AK098357|TUBA1B|10376|tubulin, alpha 1b##AK098635|TUBA1B|10376|tubulin, alpha 1b##AK098771|TUBA1B|10376|tubulin, alpha 1b##AK289354|TUBA1B|10376|tubulin, alpha 1b##BC015883|TUBA1B|10376|tubulin, alpha 1b##BC017004|TUBA1B|10376|tubulin, alpha 1b##BC008659|TUBA1B|10376|tubulin, alpha 1b##K00558|TUBA1B|10376|tubulin, alpha 1b##AK289483|TUBA1A|7846|tubulin, alpha 1a##BC006468|TUBA1A|7846|tubulin, alpha 1a##BC050637|TUBA1A|7846|tubulin, alpha 1a##AF141347|TUBA1A|7846|tubulin, alpha 1a##AK057842|TUBA1A|7846|tubulin, alpha 1a##AK297775|TUBA1A|7846|tubulin, alpha 1a##BC057823|TUBA1A|7846|tubulin, alpha 1a##NM_006009|TUBA1A|7846|tubulin, alpha 1a##AK298838|TUBA1A|7846|tubulin, alpha 1a##D28390|TUBA1C|84790|tubulin, alpha 1c##AK223024|TUBA1C|84790|tubulin, alpha 1c##BC005946|TUBA1C|84790|tubulin, alpha 1c##NM_032704|TUBA1C|84790|tubulin, alpha 1c	2.980808	0.0	denovo_WM_7:38:0.330	denovo_WM_7:39:0.264	denovo_WM_7:56:0.265	denovo_WM_7:57:0.331
chr17	64437348	64437528	reg1005305.p1	5.490	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-138511	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-138688	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-211913	-	AK290171 TSC_hg19_v1_chr17_+_64831234	393797	+	BC101633 NM_145811 BC101607 AF361351 AF458898	435982	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	523451	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.998162	0.0	denovo_WM_7:32:0.985
chr3	112144816	112144947	reg1008894.p2	5.490	+	AL832529 AK129797 AK293399 BC031103 TSC_hg19_v1_chr3_+_112052024 AK074972	-92857	+	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	-92923	+	BC044801 NM_183061 AK128084	-131793	-	AK292692 NM_001085357 NM_181780	73514	-	AK307432 AB079384 CU692886 DQ893424 DQ896774 AF202092 TSC_hg19_v1_chr3_-_112280499 BC024221 NM_022488 AL137515	135561	-	TSC_hg19_v1_chr3_-_112280761 BC002830	135880	-	AL832529|CD200|4345|CD200 molecule##AK129797|CD200|4345|CD200 molecule##AK293399|CD200|4345|CD200 molecule##BC031103|CD200|4345|CD200 molecule##AK074972|CD200|4345|CD200 molecule##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK292692|BTLA|151888|B and T lymphocyte associated##NM_001085357|BTLA|151888|B and T lymphocyte associated##NM_181780|BTLA|151888|B and T lymphocyte associated##AK307432|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AB079384|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ893424|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ896774|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AF202092|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC024221|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##NM_022488|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AL137515|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC002830|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)	0.049649	0.0	
chr3	36935285	36935446	reg1009185.p2	5.490	+	NM_033403	-154014	-	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	-513313	+	BC017805 NM_198399 BC066651 BC036548	-1212906	+	TSC_hg19_v1_chr3_-_36986546 NM_014831	51205	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	99206	-	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	99336	-	NM_033403|DCLK3|85443|doublecortin-like kinase 3##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1	0.989013	0.0	denovo_WM_7:18:0.923
chr3	40653847	40653965	reg1008661.p1	5.490	+	TSC_hg19_v1_chr3_+_40566471 BC101619 BC113415 CR749268	-87406	+	TSC_hg19_v1_chr3_+_40566380 AK127181 NM_001098414 NM_198484 AX721066 AK074366	-87504	+	AK131232 AX721156 NM_175888 AK093599 AX748220 TSC_hg19_v1_chr3_+_40547598	-106322	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	587043	+	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	587118	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	1349653	-	BC101619|ZNF621|285268|zinc finger protein 621##BC113415|ZNF621|285268|zinc finger protein 621##CR749268|ZNF621|285268|zinc finger protein 621##AK127181|ZNF621|285268|zinc finger protein 621##NM_001098414|ZNF621|285268|zinc finger protein 621##NM_198484|ZNF621|285268|zinc finger protein 621##AK074366|ZNF621|285268|zinc finger protein 621##AK131232|ZNF620|253639|zinc finger protein 620##NM_175888|ZNF620|253639|zinc finger protein 620##AK093599|ZNF620|253639|zinc finger protein 620##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)	1.897849	0.0	denovo_WM_7:-7:0.678	denovo_WM_7:7:0.696
chr4	148507982	148508110	reg1008148.p1	5.490	+	TSC_hg19_v1_chr4_+_148402244 AK312812 BC022511 AK304451 S45956	-105736	+	TSC_hg19_v1_chr4_+_148402117 D90348 S57498 X61950	-105923	+	NM_001166055 NM_001957 AK315931 TSC_hg19_v1_chr4_+_148402083	-105971	+	TSC_hg19_v1_chr4_+_148538547 BC046128 NM_018241	30487	+	TSC_hg19_v1_chr4_+_148538568 AK001708	30560	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	97218	-	AK312812|EDNRA|1909|endothelin receptor type A##BC022511|EDNRA|1909|endothelin receptor type A##AK304451|EDNRA|1909|endothelin receptor type A##S45956|EDNRA|1909|endothelin receptor type A##D90348|EDNRA|1909|endothelin receptor type A##S57498|EDNRA|1909|endothelin receptor type A##X61950|EDNRA|1909|endothelin receptor type A##NM_001166055|EDNRA|1909|endothelin receptor type A##NM_001957|EDNRA|1909|endothelin receptor type A##AK315931|EDNRA|1909|endothelin receptor type A##BC046128|TMEM184C|55751|transmembrane protein 184C##NM_018241|TMEM184C|55751|transmembrane protein 184C##AK001708|TMEM184C|55751|transmembrane protein 184C##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)	0.997972	0.0	denovo_WM_7:22:0.902
chr6	89204151	89204283	reg1009393.p1	5.489	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-328451	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-349181	-	BC029488 NM_030960 AF203447	-446687	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	468974	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	469091	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	469130	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.900024	0.0	denovo_WM_7:-15:0.654	denovo_WM_7:-16:0.204
chr8	29904001	29904113	reg1007972.p1	5.489	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-695987	-	AL137704 NM_057158	-697736	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-783443	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	36417	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	36515	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	48886	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	1.985498	0.0	denovo_WM_7:-37:0.230	denovo_WM_7:-58:0.232
chr4	20631128	20631291	reg1009305.p2	5.488	+	AB017168 NM_004787 BC117190 BC143978 AF133270	-375873	+	AK096181 TSC_hg19_v1_chr4_-_18023379 CU691482 BC037322 AK299939 NM_001166139 NM_153686	-2607743	-	AF331796 NM_022346 TSC_hg19_v1_chr4_+_17812610 AB013299 AK022512 BC068467 AF235023 BC143383 BC101476 CU686641	-2818598	+	TSC_hg19_v1_chr4_+_20702080 AK307786 NM_001130727 NM_145048 AK294077 AK297556 AK307355 AK315482 AK291544 AK307092	70858	+	DQ148492 AK294188 TSC_hg19_v1_chr4_-_20985711	354420	-	AY118170 DQ148489 NM_147183 AK290998	674360	-	AB017168|SLIT2|9353|slit homolog 2 (Drosophila)##NM_004787|SLIT2|9353|slit homolog 2 (Drosophila)##BC117190|SLIT2|9353|slit homolog 2 (Drosophila)##BC143978|SLIT2|9353|slit homolog 2 (Drosophila)##AF133270|SLIT2|9353|slit homolog 2 (Drosophila)##AK096181|LCORL|254251|ligand dependent nuclear receptor corepressor-like##BC037322|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AK299939|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_001166139|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_153686|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AF331796|NCAPG|64151|non-SMC condensin I complex, subunit G##NM_022346|NCAPG|64151|non-SMC condensin I complex, subunit G##AB013299|NCAPG|64151|non-SMC condensin I complex, subunit G##AK022512|NCAPG|64151|non-SMC condensin I complex, subunit G##BC068467|NCAPG|64151|non-SMC condensin I complex, subunit G##AF235023|NCAPG|64151|non-SMC condensin I complex, subunit G##BC143383|NCAPG|64151|non-SMC condensin I complex, subunit G##BC101476|NCAPG|64151|non-SMC condensin I complex, subunit G##AK307786|PACRGL|133015|PARK2 co-regulated-like##NM_001130727|PACRGL|133015|PARK2 co-regulated-like##NM_145048|PACRGL|133015|PARK2 co-regulated-like##AK294077|PACRGL|133015|PARK2 co-regulated-like##AK297556|PACRGL|133015|PARK2 co-regulated-like##AK307355|PACRGL|133015|PARK2 co-regulated-like##AK315482|PACRGL|133015|PARK2 co-regulated-like##AK291544|PACRGL|133015|PARK2 co-regulated-like##AK307092|PACRGL|133015|PARK2 co-regulated-like##DQ148492|KCNIP4|80333|Kv channel interacting protein 4##AK294188|KCNIP4|80333|Kv channel interacting protein 4##AY118170|KCNIP4|80333|Kv channel interacting protein 4##DQ148489|KCNIP4|80333|Kv channel interacting protein 4##NM_147183|KCNIP4|80333|Kv channel interacting protein 4##AK290998|KCNIP4|80333|Kv channel interacting protein 4	1.988745	0.0	denovo_WM_7:-20:0.298	denovo_WM_7:-21:0.298	denovo_WM_7:-22:0.298	denovo_WM_7:-60:0.582	denovo_WM_7:-61:0.290
chr7	1311865	1312045	reg1009184.p1	5.488	+	TSC_hg19_v1_chr7_+_1272552 NM_001080461	-39353	+	TSC_hg19_v1_chr7_+_1200097 AK090593	-111842	+	TSC_hg19_v1_chr7_-_1199853 NM_182491	-112116	-	CU691530 EU832111 EU832205 AK074068 BC037988 TSC_hg19_v1_chr7_-_1499102	187078	-	TSC_hg19_v1_chr7_-_1499107 AK027124 NM_182924	187152	-	TSC_hg19_v1_chr7_-_1544019 AK093809 AX748318 NM_001080453	232078	-	NM_001080461|UNCX|340260|UNC homeobox##NM_182491|ZFAND2A|90637|zinc finger, AN1-type domain 2A##EU832111|MICALL2|79778|MICAL-like 2##EU832205|MICALL2|79778|MICAL-like 2##AK074068|MICALL2|79778|MICAL-like 2##BC037988|MICALL2|79778|MICAL-like 2##AK027124|MICALL2|79778|MICAL-like 2##NM_182924|MICALL2|79778|MICAL-like 2##NM_001080453|INTS1|26173|integrator complex subunit 1	0.0	0.0	
chr9	134580913	134581057	reg1009452.p2	5.488	+	AK057848 TSC_hg19_v1_chr9_-_134406625 BC091495 BC015547 AK022317 NM_001135954 NM_031432	-174335	-	TSC_hg19_v1_chr9_-_134406578 AF254133 CR457281 CU677347 AF237290 AF125106 AK295471 AK307475	-174438	-	AK315218 TSC_hg19_v1_chr9_+_134378402 AK293529 BC022877	-202550	+	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	4217	-	D21239 NM_005312	31939	-	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	34305	-	AK057848|UCK1|83549|uridine-cytidine kinase 1##BC091495|UCK1|83549|uridine-cytidine kinase 1##BC015547|UCK1|83549|uridine-cytidine kinase 1##AK022317|UCK1|83549|uridine-cytidine kinase 1##NM_001135954|UCK1|83549|uridine-cytidine kinase 1##NM_031432|UCK1|83549|uridine-cytidine kinase 1##AF254133|UCK1|83549|uridine-cytidine kinase 1##CR457281|UCK1|83549|uridine-cytidine kinase 1##AF237290|UCK1|83549|uridine-cytidine kinase 1##AF125106|UCK1|83549|uridine-cytidine kinase 1##AK295471|UCK1|83549|uridine-cytidine kinase 1##AK307475|UCK1|83549|uridine-cytidine kinase 1##AK315218|POMT1|10585|protein-O-mannosyltransferase 1##AK293529|POMT1|10585|protein-O-mannosyltransferase 1##BC022877|POMT1|10585|protein-O-mannosyltransferase 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1	0.044559	0.0	
chr14	77543464	77543584	reg1005707.p2	5.487	+	AK124327 TSC_hg19_v1_chr14_-_77542533	-991	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-48464	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-48840	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	21121	+	BC117676 TSC_hg19_v1_chr14_-_77608072	64491	-	AK294840 TSC_hg19_v1_chr14_-_77608135 AK095612 NM_174976	64611	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK294840|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK095612|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_174976|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.995245	0.320339	CTCF.p2:0:0.320
chr7	6413509	6413663	reg1000666.p3	5.487	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-25076	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-101355	-	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-268988	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	641	+	TSC_hg19_v1_chr7_-_6474593 AK298910	61004	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	73953	-	AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta	0.985348	0.0	denovo_WM_7:6:0.763
chr10	98047918	98048098	reg1000383.p2	5.486	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-16765	-	BC109045 BC109046 TSC_hg19_v1_chr10_+_97889812 AK095317 BC030967	-158266	+	TSC_hg19_v1_chr10_+_97889471 CR627437 NM_014803 BC011627	-158512	+	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	16160	+	AF367761 NM_001040102 NM_001040103 NM_033207	71066	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	225555	-	AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC109045|ZNF518A|9849|zinc finger protein 518A##BC109046|ZNF518A|9849|zinc finger protein 518A##BC030967|ZNF518A|9849|zinc finger protein 518A##CR627437|ZNF518A|9849|zinc finger protein 518A##NM_014803|ZNF518A|9849|zinc finger protein 518A##NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2	0.0	0.0	
chr13	51981165	51981345	reg1008781.p2	5.486	+	AX772926 NM_001101320 AM402969	-66060	+	TSC_hg19_v1_chr13_+_51796507 BC034497 NM_001242312 NM_145019 AK055269 AK096364 BC051771 AB527542 CU690842	-184739	+	BC001397 BC005088 BC007332 BC010174 TSC_hg19_v1_chr13_+_51484193	-497098	+	AF097645 BC039829 BC018725 BC013358 BC032386 TSC_hg19_v1_chr13_-_52027173 AK296801 AK304218	45898	-	NM_001039937 NM_001039938 NM_012141 AL833524 TSC_hg19_v1_chr13_-_52027409	46087	-	TSC_hg19_v1_chr13_+_52027481 BC030118 BC045725	46218	+	AX772926|SERPINE3|647174|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3##NM_001101320|SERPINE3|647174|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3##AM402969|SERPINE3|647174|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3##BC034497|FAM124A|220108|family with sequence similarity 124A##NM_001242312|FAM124A|220108|family with sequence similarity 124A##NM_145019|FAM124A|220108|family with sequence similarity 124A##AK055269|FAM124A|220108|family with sequence similarity 124A##AK096364|FAM124A|220108|family with sequence similarity 124A##BC051771|FAM124A|220108|family with sequence similarity 124A##BC001397|RNASEH2B|79621|ribonuclease H2, subunit B##BC005088|RNASEH2B|79621|ribonuclease H2, subunit B##BC007332|RNASEH2B|79621|ribonuclease H2, subunit B##BC010174|RNASEH2B|79621|ribonuclease H2, subunit B##AF097645|INTS6|26512|integrator complex subunit 6##BC039829|INTS6|26512|integrator complex subunit 6##BC018725|INTS6|26512|integrator complex subunit 6##BC013358|INTS6|26512|integrator complex subunit 6##BC032386|INTS6|26512|integrator complex subunit 6##AK296801|INTS6|26512|integrator complex subunit 6##AK304218|INTS6|26512|integrator complex subunit 6##NM_001039937|INTS6|26512|integrator complex subunit 6##NM_001039938|INTS6|26512|integrator complex subunit 6##NM_012141|INTS6|26512|integrator complex subunit 6##AL833524|INTS6|26512|integrator complex subunit 6	1.021219	0.0	denovo_WM_7:-33:0.813
chr17	46373008	46373075	reg1007874.p1	5.486	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-187889	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-188056	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-194220	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	134497	-	TSC_hg19_v1_chr17_-_46507604 BC039040	134576	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	235230	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	0.0	0.0	
chr17	57926277	57926457	reg1007429.p2	5.486	+	TSC_hg19_v1_chr17_+_57915291 AK310806	-11061	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-141294	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-141332	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	43824	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	44095	+	TSC_hg19_v1_chr17_+_57970492 AK300202 AK312875 BC053365 M60724 AB384946 CU690966 AK297147	44175	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK300202|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK312875|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC053365|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##M60724|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK297147|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	0.377423	0.0	denovo_WM_7:29:0.333
chr11	67273682	67273825	reg1008376.p2	5.485	+	TSC_hg19_v1_chr11_-_67272835 AF334584 BC022230 NM_001130848 NM_004910	-920	-	X98654 TSC_hg19_v1_chr11_-_67271900	-1879	-	TSC_hg19_v1_chr11_+_67250595 BC104797 BC104827 U31913 AB529203 EU446613	-23141	+	TSC_hg19_v1_chr11_-_67275634 BT006909 CR457050 CR542042 AK310197 AK001498 BC016704 AF089814	1880	-	BC002850 NM_005851 AK308725 TSC_hg19_v1_chr11_-_67276169	2386	-	AB528802 AF169154 BC018476 NM_016366	17095	-	AF334584|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##BC022230|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##NM_001130848|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##NM_004910|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##X98654|PITPNM1|9600|phosphatidylinositol transfer protein, membrane-associated 1##BC104797|AIP|9049|aryl hydrocarbon receptor interacting protein##BC104827|AIP|9049|aryl hydrocarbon receptor interacting protein##U31913|AIP|9049|aryl hydrocarbon receptor interacting protein##EU446613|AIP|9049|aryl hydrocarbon receptor interacting protein##BT006909|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##CR457050|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##CR542042|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AK310197|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AK001498|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##BC016704|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AF089814|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##BC002850|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##NM_005851|CDK2AP2|10263|cyclin-dependent kinase 2 associated protein 2##AF169154|CABP2|51475|calcium binding protein 2##BC018476|CABP2|51475|calcium binding protein 2##NM_016366|CABP2|51475|calcium binding protein 2	0.0	0.998687	CTCF.p2:11:0.999
chr5	169704095	169704215	reg1008801.p1	5.485	+	BC030767 NM_001102609 BC092511	-44159	+	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	-171184	+	AK055998 NM_001129891	-296412	-	BT007273 FN432830 DQ890681 DQ893863 AB527802 TSC_hg19_v1_chr5_-_169724688	20496	-	TSC_hg19_v1_chr5_-_169724734 BC016618 AK310369	20600	-	AK292890 TSC_hg19_v1_chr5_-_169724784 AK300000	20643	-	BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##BT007273|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##FN432830|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##DQ890681|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##DQ893863|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##BC016618|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##AK310369|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##AK292890|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)##AK300000|LCP2|3937|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)	0.999244	0.0	
chr7	55602062	55602242	reg1002250.p3	5.485	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	-168580	+	AK095857 NM_018697	-169012	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-515206	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	37888	-	TSC_hg19_v1_chr7_-_55640073 AB097004	37930	-	BC016650 AK314338 TSC_hg19_v1_chr7_-_55640107	37953	-	AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AB097004|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##BC016650|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK314338|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.0	0.0	
chr15	23072965	23073114	reg1009383.p1	5.484	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-38623	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-38672	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-38705	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	13335	-	BC025678 NM_001142275	13803	-	TSC_hg19_v1_chr15_-_23115247 BC044583	42209	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	1.944263	0.0	denovo_WM_7:62:0.857	denovo_WM_7:77:0.859
chr5	173350393	173350555	reg1008506.p2	5.484	+	TSC_hg19_v1_chr5_+_173315343 NM_030627	-35096	+	TSC_hg19_v1_chr5_-_173043654 BC007436 NM_001159651 NM_138369	-306801	-	TSC_hg19_v1_chr5_-_173043624 AK301982	-306846	-	NM_001144954 BC092489 BC066964 BC034971 BC047225 BC053953 BC057842	65716	+	TSC_hg19_v1_chr5_+_173472722 AK315952 AK297196 AK312359 BC002619 NM_015980 AK294383 BC018873	122237	+	TSC_hg19_v1_chr5_+_173472748 AF113537 AF123767 AF133422	122278	+	NM_030627|CPEB4|80315|cytoplasmic polyadenylation element binding protein 4##BC007436|BOD1|91272|biorientation of chromosomes in cell division 1##NM_001159651|BOD1|91272|biorientation of chromosomes in cell division 1##NM_138369|BOD1|91272|biorientation of chromosomes in cell division 1##AK301982|BOD1|91272|biorientation of chromosomes in cell division 1##NM_001144954|C5orf47|133491|chromosome 5 open reading frame 47##BC092489|C5orf47|133491|chromosome 5 open reading frame 47##BC066964|C5orf47|133491|chromosome 5 open reading frame 47##BC034971|C5orf47|133491|chromosome 5 open reading frame 47##BC047225|C5orf47|133491|chromosome 5 open reading frame 47##BC053953|C5orf47|133491|chromosome 5 open reading frame 47##BC057842|C5orf47|133491|chromosome 5 open reading frame 47##AK315952|HMP19|51617|HMP19 protein##AK297196|HMP19|51617|HMP19 protein##AK312359|HMP19|51617|HMP19 protein##BC002619|HMP19|51617|HMP19 protein##NM_015980|HMP19|51617|HMP19 protein##AK294383|HMP19|51617|HMP19 protein##BC018873|HMP19|51617|HMP19 protein##AF113537|HMP19|51617|HMP19 protein##AF123767|HMP19|51617|HMP19 protein##AF133422|HMP19|51617|HMP19 protein	0.0	0.0	
chr6	128879259	128879374	reg1009503.p1	5.484	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-37660	-	AK124031 NM_001164687	-639558	-	AK292046 AK097903 BC144034 BC130516 NM_001010923 NM_001164685	-657116	-	NM_000426 NM_001079823 Z26653	324997	+	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	1152010	-	NM_001010876	1303099	-	Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##AK292046|THEMIS|387357|thymocyte selection associated##AK097903|THEMIS|387357|thymocyte selection associated##BC144034|THEMIS|387357|thymocyte selection associated##BC130516|THEMIS|387357|thymocyte selection associated##NM_001010923|THEMIS|387357|thymocyte selection associated##NM_001164685|THEMIS|387357|thymocyte selection associated##NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191	0.0	0.0	
chr7	135528147	135528287	reg1006016.p1	5.484	+	BC137311 BC137312 AK297754 AY358803 AK290250 AK310180 NM_205855	-94738	-	AF169301 NM_012450 BC030689 TSC_hg19_v1_chr7_-_135412940 AB208809	-115281	-	TSC_hg19_v1_chr7_+_135347230 NM_001130929 BC063529 BC073942 BC021734 BC107765 BC047474 BC016741 BC040872	-180956	+	AF130088 TSC_hg19_v1_chr7_-_135613232	85003	-	AB489167 AM393216 AM393266 TSC_hg19_v1_chr7_-_135661945	133679	-	TSC_hg19_v1_chr7_-_135662107 AF106075 AL834231 BC028093 AK309816 AK056225	133873	-	BC137311|FAM180A|389558|family with sequence similarity 180, member A##BC137312|FAM180A|389558|family with sequence similarity 180, member A##AK297754|FAM180A|389558|family with sequence similarity 180, member A##AY358803|FAM180A|389558|family with sequence similarity 180, member A##AK290250|FAM180A|389558|family with sequence similarity 180, member A##AK310180|FAM180A|389558|family with sequence similarity 180, member A##NM_205855|FAM180A|389558|family with sequence similarity 180, member A##AF169301|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##NM_012450|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##BC030689|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##AB208809|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##NM_001130929|C7orf73|647087|chromosome 7 open reading frame 73##BC063529|C7orf73|647087|chromosome 7 open reading frame 73##BC073942|C7orf73|647087|chromosome 7 open reading frame 73##BC021734|C7orf73|647087|chromosome 7 open reading frame 73##BC107765|C7orf73|647087|chromosome 7 open reading frame 73##BC047474|C7orf73|647087|chromosome 7 open reading frame 73##BC016741|C7orf73|647087|chromosome 7 open reading frame 73##BC040872|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##AF130088|LUZP6|767558|leucine zipper protein 6##AM393216|MTPN|136319|myotrophin##AM393266|MTPN|136319|myotrophin##AF106075|MTPN|136319|myotrophin##AL834231|MTPN|136319|myotrophin##BC028093|MTPN|136319|myotrophin##AK309816|MTPN|136319|myotrophin##AK056225|MTPN|136319|myotrophin	0.992237	0.0	denovo_WM_7:57:0.303	denovo_WM_7:62:0.508
chr15	64540346	64540467	reg1010400.p1	5.483	+	TSC_hg19_v1_chr15_-_64455365 BC008848 NM_000942	-85060	-	TSC_hg19_v1_chr15_-_64455219 BC032138 BC020800 AK291149 D28465	-85191	-	TSC_hg19_v1_chr15_-_64455190 BC001125 M63573 AK311074	-85209	-	BC130613 BC136504 AL832551 TSC_hg19_v1_chr15_-_64648283	107862	-	TSC_hg19_v1_chr15_-_64648373 AK225960 NM_022048	107994	-	AF529370 AY598324 AB463081 CU675545 BC005832 D14657 BC007101 TSC_hg19_v1_chr15_-_64673641 AK290748 BC016782 NM_001029989 NM_014736	133229	-	BC008848|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##NM_000942|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC032138|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC020800|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##AK291149|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##D28465|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC001125|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##M63573|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##AK311074|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC130613|CSNK1G1|53944|casein kinase 1, gamma 1##BC136504|CSNK1G1|53944|casein kinase 1, gamma 1##AL832551|CSNK1G1|53944|casein kinase 1, gamma 1##AK225960|CSNK1G1|53944|casein kinase 1, gamma 1##NM_022048|CSNK1G1|53944|casein kinase 1, gamma 1##AF529370|KIAA0101|9768|KIAA0101##AY598324|KIAA0101|9768|KIAA0101##BC005832|KIAA0101|9768|KIAA0101##D14657|KIAA0101|9768|KIAA0101##BC007101|KIAA0101|9768|KIAA0101##AK290748|KIAA0101|9768|KIAA0101##BC016782|KIAA0101|9768|KIAA0101##NM_001029989|KIAA0101|9768|KIAA0101##NM_014736|KIAA0101|9768|KIAA0101	0.0	0.0	
chr18	51736436	51736611	reg1009881.p1	5.483	+	TSC_hg19_v1_chr18_-_51690988 AL110266	-45531	-	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	-1869410	+	NM_005215 TSC_hg19_v1_chr18_+_49866541	-1869982	+	AF072246 TSC_hg19_v1_chr18_-_51750614	14014	-	TSC_hg19_v1_chr18_-_51750997 BC032638	14442	-	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	14554	-	AL110266|MBD2|8932|methyl-CpG binding domain protein 2##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##NM_005215|DCC|1630|deleted in colorectal carcinoma##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2	0.0	0.0	
chr2	128333084	128333237	reg1006408.p1	5.483	+	TSC_hg19_v1_chr2_+_128293312 NM_001080527	-39816	+	BC065279 BC110536 BC110537 TSC_hg19_v1_chr2_-_128284054 AK000868 AL834178 AK296848 AK027561 AK295970 AK309006 AK056881 AK294669 NM_017969	-49195	-	TSC_hg19_v1_chr2_+_128176019 BC034377	-157134	+	NM_001161415 NM_001161416 NM_001161417 NM_005291 AK292725 BX538082 BC013202 Z94154 Y12546 BC031653	70438	+	AB463832 AF527767 AK094954 AF527764 NM_017980	88905	-	AK022470 AK000906 TSC_hg19_v1_chr2_-_128432682 BC065816 AF527765 NM_001136037 NM_001161403	99542	-	NM_001080527|MYO7B|4648|myosin VIIB##BC065279|IWS1|55677|IWS1 homolog (S. cerevisiae)##BC110536|IWS1|55677|IWS1 homolog (S. cerevisiae)##BC110537|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK000868|IWS1|55677|IWS1 homolog (S. cerevisiae)##AL834178|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK296848|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK027561|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK295970|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK309006|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK056881|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK294669|IWS1|55677|IWS1 homolog (S. cerevisiae)##NM_017969|IWS1|55677|IWS1 homolog (S. cerevisiae)##BC034377|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##NM_001161415|GPR17|2840|G protein-coupled receptor 17##NM_001161416|GPR17|2840|G protein-coupled receptor 17##NM_001161417|GPR17|2840|G protein-coupled receptor 17##NM_005291|GPR17|2840|G protein-coupled receptor 17##AK292725|GPR17|2840|G protein-coupled receptor 17##BX538082|GPR17|2840|G protein-coupled receptor 17##BC013202|GPR17|2840|G protein-coupled receptor 17##Z94154|GPR17|2840|G protein-coupled receptor 17##Y12546|GPR17|2840|G protein-coupled receptor 17##BC031653|GPR17|2840|G protein-coupled receptor 17##AF527767|LIMS2|55679|LIM and senescent cell antigen-like domains 2##AK094954|LIMS2|55679|LIM and senescent cell antigen-like domains 2##AF527764|LIMS2|55679|LIM and senescent cell antigen-like domains 2##NM_017980|LIMS2|55679|LIM and senescent cell antigen-like domains 2##AK022470|LIMS2|55679|LIM and senescent cell antigen-like domains 2##AK000906|LIMS2|55679|LIM and senescent cell antigen-like domains 2##BC065816|LIMS2|55679|LIM and senescent cell antigen-like domains 2##AF527765|LIMS2|55679|LIM and senescent cell antigen-like domains 2##NM_001136037|LIMS2|55679|LIM and senescent cell antigen-like domains 2##NM_001161403|LIMS2|55679|LIM and senescent cell antigen-like domains 2	0.922148	0.0	denovo_WM_7:-10:0.210	denovo_WM_7:-12:0.487
chr9	80531586	80531731	reg1007878.p1	5.483	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-268427	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-563310	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-739150	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	114526	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	319372	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	380400	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.848654	0.0	denovo_WM_7:26:0.685
chr1	206654952	206655087	reg1007601.p2	5.482	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	-11174	+	TSC_hg19_v1_chr1_+_206643818 AK093798 AK310737 AY660028	-11213	+	NM_001193321 NM_001193322 NM_014002	-11434	+	TSC_hg19_v1_chr1_+_206680860 AK289861	25842	+	TSC_hg19_v1_chr1_+_206680863 AK291268 AY062002 AY062003 BC004270 BC007203 NM_182663 NM_182664 AB209145 DQ892961 DQ896208	25882	+	TSC_hg19_v1_chr1_+_206730491 NM_182665 AF445801	75456	+	BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK093798|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK310737|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AY660028|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193321|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193322|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_014002|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK289861|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK291268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062002|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062003|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC004270|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC007203|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182663|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182664|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AB209145|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ892961|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ896208|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182665|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AF445801|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5	0.998556	0.0	denovo_WM_7:97:0.561	denovo_WM_7:98:0.281
chr13	27734596	27734721	reg1008578.p2	5.481	+	AK312602 AK294378 AK311107 AK307756 AK290220 NM_005288 TSC_hg19_v1_chr13_-_27334929	-399805	-	TSC_hg19_v1_chr13_+_27131892 AF454702	-602756	+	TSC_hg19_v1_chr13_+_27131854 AK289845 BC050283 NM_006646	-602824	+	DQ894074 AF022789 TSC_hg19_v1_chr13_-_27745948 AK289685	11203	-	TSC_hg19_v1_chr13_-_27746003 BC026072 NM_182488	11428	-	TSC_hg19_v1_chr13_+_27825693 D28406 NM_000982 AK130968 AK311795 BC070185 BC070323 BC070330 BC104667 BX647669 AY320407 U25789 BC104478 L25348 U14967 BC070184 BC001603	91084	+	AK312602|GPR12|2835|G protein-coupled receptor 12##AK294378|GPR12|2835|G protein-coupled receptor 12##AK311107|GPR12|2835|G protein-coupled receptor 12##AK307756|GPR12|2835|G protein-coupled receptor 12##AK290220|GPR12|2835|G protein-coupled receptor 12##NM_005288|GPR12|2835|G protein-coupled receptor 12##AF454702|WASF3|10810|WAS protein family, member 3##AK289845|WASF3|10810|WAS protein family, member 3##BC050283|WASF3|10810|WAS protein family, member 3##NM_006646|WASF3|10810|WAS protein family, member 3##DQ894074|USP12|219333|ubiquitin specific peptidase 12##AF022789|USP12|219333|ubiquitin specific peptidase 12##AK289685|USP12|219333|ubiquitin specific peptidase 12##BC026072|USP12|219333|ubiquitin specific peptidase 12##NM_182488|USP12|219333|ubiquitin specific peptidase 12##D28406|RPL21|6144|ribosomal protein L21##NM_000982|RPL21|6144|ribosomal protein L21##AK130968|RPL21|6144|ribosomal protein L21##AK311795|RPL21|6144|ribosomal protein L21##BC070185|RPL21|6144|ribosomal protein L21##BC070323|RPL21|6144|ribosomal protein L21##BC070330|RPL21|6144|ribosomal protein L21##BC104667|RPL21|6144|ribosomal protein L21##BX647669|RPL21|6144|ribosomal protein L21##U25789|RPL21|6144|ribosomal protein L21##BC104478|RPL21|6144|ribosomal protein L21##U14967|RPL21|6144|ribosomal protein L21##BC070184|RPL21|6144|ribosomal protein L21##BC001603|RPL21|6144|ribosomal protein L21	1.008682	0.0	denovo_WM_7:-18:0.829
chr18	3633383	3633512	reg1007584.p2	5.481	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-39305	+	NM_173211	-179676	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-181816	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	211883	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	240837	-	AK294777 AK294717 NM_001242762 NM_001242763	241280	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.999216	0.0	denovo_WM_7:-35:0.239	denovo_WM_7:-36:0.239	denovo_WM_7:-37:0.239	denovo_WM_7:-38:0.239
chr5	137233501	137233647	reg1009415.p1	5.481	+	NM_014386 BC044581 AK301924 BC038714 AF182034 AF118125 CU692208	-8423	+	AF133820 AK300076 AK307620 AK312733 BC005376 TSC_hg19_v1_chr5_+_137203565 AF144477	-30008	+	NM_001135940 NM_006790 AK300088 TSC_hg19_v1_chr5_+_137203548	-30028	+	TSC_hg19_v1_chr5_-_137368717 AF251038	135128	-	TSC_hg19_v1_chr5_-_137368770 BC041335 BC048965	135197	-	TSC_hg19_v1_chr5_-_137368776 AK314224	135202	-	NM_014386|PKD2L2|27039|polycystic kidney disease 2-like 2##BC044581|PKD2L2|27039|polycystic kidney disease 2-like 2##AK301924|PKD2L2|27039|polycystic kidney disease 2-like 2##BC038714|PKD2L2|27039|polycystic kidney disease 2-like 2##AF182034|PKD2L2|27039|polycystic kidney disease 2-like 2##AF118125|PKD2L2|27039|polycystic kidney disease 2-like 2##AF133820|MYOT|9499|myotilin##AK300076|MYOT|9499|myotilin##AK307620|MYOT|9499|myotilin##AK312733|MYOT|9499|myotilin##BC005376|MYOT|9499|myotilin##AF144477|MYOT|9499|myotilin##NM_001135940|MYOT|9499|myotilin##NM_006790|MYOT|9499|myotilin##AK300088|MYOT|9499|myotilin##AF251038|FAM13B|51306|family with sequence similarity 13, member B##BC041335|FAM13B|51306|family with sequence similarity 13, member B##BC048965|FAM13B|51306|family with sequence similarity 13, member B##AK314224|FAM13B|51306|family with sequence similarity 13, member B	2.323688	0.0	denovo_WM_7:61:0.274	denovo_WM_7:75:0.269	denovo_WM_7:77:0.538	denovo_WM_7:92:0.986
chr13	98087681	98087789	reg1008296.p2	5.480	+	TSC_hg19_v1_chr13_+_98086683 AF205602 BC070031 EU832309 EU832393 X12534 AB464128 AF493914	-1033	+	TSC_hg19_v1_chr13_+_98086350 AK315139 NM_021033 BC041333	-1298	+	TSC_hg19_v1_chr13_+_97999294 AF339832	-88441	+	NM_002271 BC045640	518202	+	TSC_hg19_v1_chr13_+_98628928 BX648222 AK303494 AK225286 BC001497 BC019309 DQ893033 EU176755 U72761	541097	+	TSC_hg19_v1_chr13_+_98795412 NM_001001715 NM_005766	707686	+	AF205602|RAP2A|5911|RAP2A, member of RAS oncogene family##BC070031|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832309|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832393|RAP2A|5911|RAP2A, member of RAS oncogene family##X12534|RAP2A|5911|RAP2A, member of RAS oncogene family##AF493914|RAP2A|5911|RAP2A, member of RAS oncogene family##AK315139|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_021033|RAP2A|5911|RAP2A, member of RAS oncogene family##BC041333|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_002271|IPO5|3843|importin 5##BC045640|IPO5|3843|importin 5##BX648222|IPO5|3843|importin 5##AK303494|IPO5|3843|importin 5##AK225286|IPO5|3843|importin 5##BC001497|IPO5|3843|importin 5##BC019309|IPO5|3843|importin 5##DQ893033|IPO5|3843|importin 5##EU176755|IPO5|3843|importin 5##U72761|IPO5|3843|importin 5##NM_001001715|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##NM_005766|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	1.921979	0.0	denovo_WM_7:-47:0.209	denovo_WM_7:-53:0.206
chr18	15028152	15028271	reg1009311.p1	5.480	+	AF269088 NM_001145029 BC028407	-279926	+	BC140940 BX649118 AK307658 NM_001137671	-484667	-	TSC_hg19_v1_chr18_+_14179298 BC127726	-848902	+	TSC_hg19_v1_chr18_-_18691640 AK307388	3663427	-	TSC_hg19_v1_chr18_-_18691765 AK057038 NM_005406	3663577	-	TSC_hg19_v1_chr18_+_18822192 AB051559 NM_001142966 BC125017	3794032	+	AF269088|ANKRD30B|374860|ankyrin repeat domain 30B##NM_001145029|ANKRD30B|374860|ankyrin repeat domain 30B##BC028407|ANKRD30B|374860|ankyrin repeat domain 30B##BC140940|POTEC|388468|POTE ankyrin domain family, member C##BX649118|POTEC|388468|POTE ankyrin domain family, member C##AK307658|POTEC|388468|POTE ankyrin domain family, member C##NM_001137671|POTEC|388468|POTE ankyrin domain family, member C##BC127726|ANKRD20A5P|440482|ankyrin repeat domain 20 family, member A5, pseudogene##AK307388|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1##AK057038|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1##NM_005406|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1##AB051559|GREB1L|80000|growth regulation by estrogen in breast cancer-like##NM_001142966|GREB1L|80000|growth regulation by estrogen in breast cancer-like##BC125017|GREB1L|80000|growth regulation by estrogen in breast cancer-like	0.979391	0.014948	denovo_WM_7:26:0.953
chr6	64362940	64363106	reg1008093.p1	5.480	+	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-6581	+	TSC_hg19_v1_chr6_+_64346027 BX648268 AK290491	-17006	+	TSC_hg19_v1_chr6_+_64345729 AK315868 AK298580	-17200	+	AY358133 NM_198283 AK310478	1926682	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	2054070	-	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	4236005	-	AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##BX648268|PHF3|23469|PHD finger protein 3##AK290491|PHF3|23469|PHD finger protein 3##AK315868|PHF3|23469|PHD finger protein 3##AK298580|PHF3|23469|PHD finger protein 3##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3	2.466496	0.0	denovo_WM_7:-35:0.205	denovo_WM_7:41:0.506	denovo_WM_7:43:0.265	denovo_WM_7:-91:0.711	denovo_WM_7:95:0.205
chr17	2286024	2286119	reg1007642.p1	5.478	+	TSC_hg19_v1_chr17_+_2240796 NM_014853 AB007857 NM_001098509 BC039204 AK294955 AB275762 AB385325 AB449878 AK304263	-45169	+	NM_018128 AB037822	-45333	-	AB463326 TSC_hg19_v1_chr17_-_2239749 AK026565	-46327	-	X96401 NM_020310 TSC_hg19_v1_chr17_-_2304355 AK291596	18245	-	TSC_hg19_v1_chr17_-_2415189 BX647255 AK294547 BC050603 BC001213 AL832612 AK027410 AK296464 NM_024086	129074	-	TSC_hg19_v1_chr17_+_2496944 NM_000430 L13386	210899	+	NM_014853|SGSM2|9905|small G protein signaling modulator 2##AB007857|SGSM2|9905|small G protein signaling modulator 2##NM_001098509|SGSM2|9905|small G protein signaling modulator 2##BC039204|SGSM2|9905|small G protein signaling modulator 2##AK294955|SGSM2|9905|small G protein signaling modulator 2##AB275762|SGSM2|9905|small G protein signaling modulator 2##AB449878|SGSM2|9905|small G protein signaling modulator 2##AK304263|SGSM2|9905|small G protein signaling modulator 2##NM_018128|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##AB037822|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##AK026565|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##X96401|MNT|4335|MAX binding protein##NM_020310|MNT|4335|MAX binding protein##AK291596|MNT|4335|MAX binding protein##BX647255|METTL16|79066|methyltransferase like 16##AK294547|METTL16|79066|methyltransferase like 16##BC050603|METTL16|79066|methyltransferase like 16##BC001213|METTL16|79066|methyltransferase like 16##AL832612|METTL16|79066|methyltransferase like 16##AK027410|METTL16|79066|methyltransferase like 16##AK296464|METTL16|79066|methyltransferase like 16##NM_024086|METTL16|79066|methyltransferase like 16##NM_000430|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13386|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.0	0.939537	CTCF.p2:-19:0.940
chr17	45308515	45308661	reg1009245.p1	5.478	+	NM_002476 TSC_hg19_v1_chr17_+_45286713 BC030228 M24121 M36172 X13955 AB528188 AM392523 AM392536 AM392902 AM393643 AM393677	-21838	+	NM_001002841 X52005	-22138	+	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	-41904	-	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	22596	+	AY826979 TSC_hg19_v1_chr17_+_45331224 AB587392 U95204	22636	+	TSC_hg19_v1_chr17_+_45331260 AK300424	22670	+	NM_002476|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC030228|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M24121|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M36172|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X13955|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392523|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392536|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392902|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393643|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393677|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##NM_001002841|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X52005|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##AY826979|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##U95204|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	0.997539	0.0	denovo_WM_7:7:0.493	denovo_WM_7:8:0.493
chr7	73514999	73515108	reg1008384.p2	5.478	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-7536	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	-16719	+	TSC_hg19_v1_chr7_+_73498160 D26309	-16898	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	73588	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	73650	+	NM_014146 NM_032463 NM_032464	109033	+	NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2	0.988579	0.0	denovo_WM_7:22:0.720	denovo_WM_7:23:0.268
chr10	78024225	78024320	reg1009518.p1	5.477	+	AF267860 NM_032024	-481754	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-862707	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-862791	-	AF118141 TSC_hg19_v1_chr10_-_79397246	1372953	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	1373064	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	1373134	-	AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	2.980301	0.0	denovo_WM_7:-63:0.329	denovo_WM_7:-64:0.247	denovo_WM_7:-98:0.249	denovo_WM_7:-99:0.331
chr4	15006492	15006657	reg1009630.p1	5.477	+	TSC_hg19_v1_chr4_+_15005451 AY247744 AY255519 BC103939 BC103940 BC103941 BC103942 BC105925	-1113	+	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	-2277	+	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	-2579	-	BX647781 NM_001135170 AK314802 BC022187 BC024015	335011	+	NM_001135171	369600	+	NM_031911 AF329839	423073	+	AY247744|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##AY255519|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103939|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103940|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103941|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103942|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC105925|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##BX647781|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001135170|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##AK314802|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BC022187|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BC024015|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001135171|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_031911|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##AF329839|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7	0.969541	0.0	denovo_WM_7:-17:0.788
chr1	198752906	198753086	reg1008219.p2	5.476	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-144666	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-144771	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-144823	+	TSC_hg19_v1_chr1_-_198906559 EF413001	153551	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1243873	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1258728	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	2.991697	0.0	denovo_WM_7:-22:0.217	denovo_WM_7:-23:0.585	denovo_WM_7:-38:0.462	denovo_WM_7:-39:0.426	denovo_WM_7:-53:0.267	denovo_WM_7:-54:0.692
chr12	15139501	15139635	reg1009936.p1	5.476	+	NM_006205 DQ980604 D45399	-13602	+	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	-25020	-	CU688844 BC030218 AY358536 NM_152321 AK056677	-48107	-	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	234782	-	NM_002848 NM_030667 TSC_hg19_v1_chr12_+_15475264 AB209729	335692	+	AK289784 TSC_hg19_v1_chr12_+_15475476 BC035960 U20489 BC126201 BC126203 Z48541 CU690232	335983	+	NM_006205|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##DQ980604|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##D45399|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_002848|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030667|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AB209729|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK289784|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC035960|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U20489|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126201|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126203|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##Z48541|PTPRO|5800|protein tyrosine phosphatase, receptor type, O	0.997703	0.0	denovo_WM_7:-25:0.234	denovo_WM_7:-26:0.234	denovo_WM_7:-27:0.234	denovo_WM_7:-28:0.234
chr6	111197762	111197899	reg1007041.p2	5.476	+	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	-1808	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-61104	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-61316	-	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	82000	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	82128	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	105444	+	AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)	0.0	0.0	
chr8	11398292	11398454	reg1010985.p1	5.476	+	S76617 NM_001715 BC018703 BC004473 BC038555	-46780	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-74144	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-193369	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	163347	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	228895	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	261811	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.998442	0.0	denovo_WM_7:0:0.222	denovo_WM_7:1:0.572
chr11	63634010	63634190	reg1000174.p2	5.475	+	TSC_hg19_v1_chr11_+_63606599 AK307858	-27496	+	TSC_hg19_v1_chr11_+_63606564 AK225766	-27551	+	TSC_hg19_v1_chr11_+_63606486 AB188493 NM_001039469 NM_001163296 NM_001163297 NM_004954	-27674	+	NM_017490 AK290339 TSC_hg19_v1_chr11_+_63656059 X97630 AY562188	21976	+	BC023587 NM_173587	50215	-	TSC_hg19_v1_chr11_-_63684632 AB593132	50539	-	AK307858|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK225766|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AB188493|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001039469|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163296|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163297|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_004954|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_017490|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK290339|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##X97630|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AY562188|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##AB593132|RCOR2|283248|REST corepressor 2	0.886132	0.0	denovo_WM_7:83:0.221	denovo_WM_7:87:0.229
chr16	11831676	11831828	reg1009478.p1	5.475	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-69454	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-150963	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-151565	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	4904	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	59299	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	59363	-	NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A	0.998902	0.0	
chr17	55433892	55434033	reg1002515.p1	5.475	+	AK093888 AX748353 NM_170721	-99589	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-99989	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-270819	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	493442	-	AK000746 NM_017949	546787	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	598714	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	0.0	0.0	
chr9	134249445	134249561	reg1007901.p1	5.475	+	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	-84275	+	BC049388 NM_033387 AK095423	-97584	-	TSC_hg19_v1_chr9_+_134001016 D14689 AB159230	-248453	+	TSC_hg19_v1_chr9_+_134269515 BC002872	20063	+	NM_013318 TSC_hg19_v1_chr9_+_134305488	55979	+	CU678266 TSC_hg19_v1_chr9_+_134305548	56037	+	AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##D14689|NUP214|8021|nucleoporin 214kDa##AB159230|NUP214|8021|nucleoporin 214kDa##BC002872|PRRC2B|84726|proline-rich coiled-coil 2B##NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B	0.99503	0.0	
chr19	47616919	47617032	reg1008240.p2	5.474	+	TSC_hg19_v1_chr19_-_47615825 AB384098	-1152	-	AK125279 TSC_hg19_v1_chr19_-_47615487	-1489	-	AK000519 NM_017854 TSC_hg19_v1_chr19_-_47551883 BC002907	-65079	-	AB028987 NM_015168 TSC_hg19_v1_chr19_-_47617034	47	-	TSC_hg19_v1_chr19_+_47634114 NM_001145713 NM_001145714 NM_005500 AK021978 AK055481 AK302287 AK027595	17104	+	TSC_hg19_v1_chr19_+_47634121 BC018271 BC000344 AF161489	17150	+	AK125279|ZC3H4|23211|zinc finger CCCH-type containing 4##AK000519|TMEM160|54958|transmembrane protein 160##NM_017854|TMEM160|54958|transmembrane protein 160##BC002907|TMEM160|54958|transmembrane protein 160##AB028987|ZC3H4|23211|zinc finger CCCH-type containing 4##NM_015168|ZC3H4|23211|zinc finger CCCH-type containing 4##NM_001145713|SAE1|10055|SUMO1 activating enzyme subunit 1##NM_001145714|SAE1|10055|SUMO1 activating enzyme subunit 1##NM_005500|SAE1|10055|SUMO1 activating enzyme subunit 1##AK021978|SAE1|10055|SUMO1 activating enzyme subunit 1##AK055481|SAE1|10055|SUMO1 activating enzyme subunit 1##AK302287|SAE1|10055|SUMO1 activating enzyme subunit 1##AK027595|SAE1|10055|SUMO1 activating enzyme subunit 1##BC018271|SAE1|10055|SUMO1 activating enzyme subunit 1##BC000344|SAE1|10055|SUMO1 activating enzyme subunit 1##AF161489|SAE1|10055|SUMO1 activating enzyme subunit 1	0.443242	0.0	denovo_WM_7:-6:0.328
chr14	66978809	66978955	reg1008765.p1	5.472	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-3657	+	TSC_hg19_v1_chr14_+_66974870 AK315569	-4013	+	TSC_hg19_v1_chr14_+_66974859 AK025169	-4029	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	677261	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	729281	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	847684	-	AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	0.0	0.0	
chr17	61627695	61627875	reg1009162.p2	5.472	+	TSC_hg19_v1_chr17_+_61600692 AK091877 AX747233 NM_030779 NM_173092 BC006334 AK298363 AK296498 AF311913	-27061	+	NM_001178057 NM_152830 BC036375 X16295 AK301988 AK302019 M26657 M29981	-65594	+	TSC_hg19_v1_chr17_+_61554421 AK296566 AK309514 NM_000789 AK300516 AB208971 J04144	-73357	+	TSC_hg19_v1_chr17_+_61627834 AK294925 NM_005828	41	+	TSC_hg19_v1_chr17_+_61627843 BC001264	60	+	TSC_hg19_v1_chr17_+_61627855 AK303212	79	+	AK091877|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##NM_030779|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##NM_173092|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##BC006334|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##AK298363|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##AK296498|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##AF311913|KCNH6|81033|potassium voltage-gated channel, subfamily H (eag-related), member 6##NM_001178057|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##NM_152830|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##X16295|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK301988|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK302019|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##M26657|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##M29981|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK296566|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK309514|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##NM_000789|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK300516|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AB208971|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##J04144|ACE|1636|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1##AK294925|DCAF7|10238|DDB1 and CUL4 associated factor 7##NM_005828|DCAF7|10238|DDB1 and CUL4 associated factor 7##BC001264|DCAF7|10238|DDB1 and CUL4 associated factor 7##AK303212|DCAF7|10238|DDB1 and CUL4 associated factor 7	0.0	0.0	
chr17	73400554	73400678	reg1007282.p2	5.472	+	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	-10839	-	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-115087	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-115144	-	AK091010 TSC_hg19_v1_chr17_-_73401721	1028	-	TSC_hg19_v1_chr17_-_73401738 BC000631	1118	-	TSC_hg19_v1_chr17_-_73401781 AK315565	1163	-	AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2	0.0	0.0	
chr16	87491551	87491688	reg1007318.p1	5.471	+	TSC_hg19_v1_chr16_+_87425998 AF303888 AM393561 DQ893152 DQ896448 AB528176 AL834298	-65605	+	TSC_hg19_v1_chr16_+_87425947 AK025556 BC067797 BC018634	-65656	+	TSC_hg19_v1_chr16_+_87425938 AK290956 BC048009 AK310224 AK310335 AF087871 AF183417	-65710	+	AB011151 AB384500 NM_015144 AB030243 BC101478	33771	-	AB593088 TSC_hg19_v1_chr16_+_87636492 NM_020655 BC036533	144882	+	TSC_hg19_v1_chr16_+_87636574 AB042636	144959	+	AF303888|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AM393561|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##DQ893152|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##DQ896448|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AL834298|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK025556|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC067797|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC018634|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK290956|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC048009|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310224|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310335|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF087871|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF183417|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AB011151|ZCCHC14|23174|zinc finger, CCHC domain containing 14##NM_015144|ZCCHC14|23174|zinc finger, CCHC domain containing 14##AB030243|ZCCHC14|23174|zinc finger, CCHC domain containing 14##BC101478|ZCCHC14|23174|zinc finger, CCHC domain containing 14##NM_020655|JPH3|57338|junctophilin 3##BC036533|JPH3|57338|junctophilin 3##AB042636|JPH3|57338|junctophilin 3	0.992506	0.0	
chr2	122310114	122310250	reg1008133.p1	5.471	+	AK297259 TSC_hg19_v1_chr2_-_122247924	-62263	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-151027	-	TSC_hg19_v1_chr2_-_122042779 AF198488 BC064698 AL137740 NM_014553	-267409	-	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	96840	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	97463	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	184283	-	AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##AF198488|TFCP2L1|29842|transcription factor CP2-like 1##BC064698|TFCP2L1|29842|transcription factor CP2-like 1##AL137740|TFCP2L1|29842|transcription factor CP2-like 1##NM_014553|TFCP2L1|29842|transcription factor CP2-like 1##BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein	0.0	0.0	
chr11	95976671	95976851	reg1009262.p1	5.470	+	BC052990 BC012086 TSC_hg19_v1_chr11_-_95657272 BC034474 BX647997 NM_001243571 NM_016156 NM_201278 NM_201281 AB028996	-319405	-	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	-319710	-	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	-452921	+	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	99642	-	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	146281	-	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	146413	+	BC052990|MTMR2|8898|myotubularin related protein 2##BC012086|MTMR2|8898|myotubularin related protein 2##BC034474|MTMR2|8898|myotubularin related protein 2##BX647997|MTMR2|8898|myotubularin related protein 2##NM_001243571|MTMR2|8898|myotubularin related protein 2##NM_016156|MTMR2|8898|myotubularin related protein 2##NM_201278|MTMR2|8898|myotubularin related protein 2##NM_201281|MTMR2|8898|myotubularin related protein 2##AB028996|MTMR2|8898|myotubularin related protein 2##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)	0.995757	0.0	denovo_WM_7:66:0.438	denovo_WM_7:67:0.438
chr19	18090524	18090644	reg1005706.p1	5.470	+	NM_002248 U69883	-28474	+	BC013949 NM_138442	-44680	+	TSC_hg19_v1_chr19_+_18043824 NM_001136203	-46760	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	21366	+	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	28434	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	107148	-	NM_002248|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##U69883|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##BC013949|CCDC124|115098|coiled-coil domain containing 124##NM_138442|CCDC124|115098|coiled-coil domain containing 124##NM_001136203|CCDC124|115098|coiled-coil domain containing 124##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1	1.792897	0.0	denovo_WM_7:27:0.459	denovo_WM_7:91:0.579
chr4	87919236	87919379	reg1007866.p1	5.470	+	TSC_hg19_v1_chr4_+_87857481 L13743	-61824	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-63092	+	BC016746 BC063410 NM_144645	-105747	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	9014	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	48944	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	222355	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	1.964754	0.0	denovo_WM_7:-31:0.588	denovo_WM_7:-32:0.253	denovo_WM_7:-46:0.201	denovo_WM_7:-47:0.327	denovo_WM_7:-48:0.432
chr5	139664840	139665014	reg1009808.p2	5.470	+	TSC_hg19_v1_chr5_+_139554722 BC023982 BC013643 AK225992 AK311640 AK312045 AJ245877	-110156	+	TSC_hg19_v1_chr5_+_139554672 NM_032412	-110273	+	BC041380 NM_001007189	-159408	+	AB464063 TSC_hg19_v1_chr5_-_139682672	17737	-	AK315353 TSC_hg19_v1_chr5_-_139682676	17748	-	TSC_hg19_v1_chr5_-_139682680 BC011869 BC003620 BC006202 AK223394 NM_002622	17757	-	BC023982|C5orf32|84418|chromosome 5 open reading frame 32##BC013643|C5orf32|84418|chromosome 5 open reading frame 32##AK225992|C5orf32|84418|chromosome 5 open reading frame 32##AK312045|C5orf32|84418|chromosome 5 open reading frame 32##AJ245877|C5orf32|84418|chromosome 5 open reading frame 32##NM_032412|C5orf32|84418|chromosome 5 open reading frame 32##BC041380|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_001007189|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##AK315353|PFDN1|5201|prefoldin subunit 1##BC011869|PFDN1|5201|prefoldin subunit 1##BC003620|PFDN1|5201|prefoldin subunit 1##BC006202|PFDN1|5201|prefoldin subunit 1##AK223394|PFDN1|5201|prefoldin subunit 1##NM_002622|PFDN1|5201|prefoldin subunit 1	0.997755	0.0	denovo_WM_7:13:0.449	denovo_WM_7:14:0.449
chr6	157173419	157173546	reg1008285.p1	5.470	+	TSC_hg19_v1_chr6_+_157099876 AF253515	-73607	+	TSC_hg19_v1_chr6_+_157099283 AF521671	-74198	+	TSC_hg19_v1_chr6_+_157099206 AB587572	-74257	+	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	571102	-	TSC_hg19_v1_chr6_-_157745183 NM_018452	571735	-	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	629057	+	AF253515|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_018452|TMEM242|729515|transmembrane protein 242##AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14	0.0	0.0	
chr10	20292843	20293023	reg1007703.p1	5.469	+	TSC_hg19_v1_chr10_+_20105360 AK304591 AY358486 NM_032812	-187560	+	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	-1344512	+	BC033534 TSC_hg19_v1_chr10_-_18948215	-1344736	-	NM_006393 Y16241	893597	-	BC140744 BC144447 NM_001010896 NM_001177483	1142554	-	AB209311 TSC_hg19_v1_chr10_-_21462987	1170054	-	AK304591|PLXDC2|84898|plexin domain containing 2##AY358486|PLXDC2|84898|plexin domain containing 2##NM_032812|PLXDC2|84898|plexin domain containing 2##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B##NM_006393|NEBL|10529|nebulette##Y16241|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113##AB209311|NEBL|10529|nebulette	0.0	0.0	
chr1	46836137	46836295	reg1009008.p2	5.469	+	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	-29773	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-66829	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-67168	-	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	23760	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	136456	+	NM_001097611	180670	-	NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_001097611|KNCN|148930|kinocilin	0.992867	0.010753	
chr19	14414423	14414555	reg1003701.p2	5.468	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-97441	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-153689	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-166498	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	77560	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	77766	+	TSC_hg19_v1_chr19_-_14529877 AK301847	115400	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.0	0.0	
chr8	27721430	27721600	reg1009078.p1	5.468	+	TSC_hg19_v1_chr8_-_27695574 AK301836	-25956	-	TSC_hg19_v1_chr8_-_27695325 AF189722 AB027250 AK027291 AF237709 BC015191 AB027249 NM_018492	-26168	-	AF306677 AF306678 TSC_hg19_v1_chr8_+_27632070 AF306675 AY882862 NM_001017420 AK124215 AF306679 AL832666 BC017933 BC034641	-89516	+	NM_173833	128853	-	AB075870 NM_001010906	219872	-	NM_018091 TSC_hg19_v1_chr8_+_27950679 AK302140 AK296475 AK022626 AK295574 AK001284 AK293424 AK315985 AK316053 AK298265 BC001240 AL834273 AB463602 AM392633	229142	+	AK301836|PBK|55872|PDZ binding kinase##AF189722|PBK|55872|PDZ binding kinase##AB027250|PBK|55872|PDZ binding kinase##AK027291|PBK|55872|PDZ binding kinase##AF237709|PBK|55872|PDZ binding kinase##BC015191|PBK|55872|PDZ binding kinase##AB027249|PBK|55872|PDZ binding kinase##NM_018492|PBK|55872|PDZ binding kinase##AF306677|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306678|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306675|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AY882862|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##NM_001017420|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AK124215|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306679|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AL832666|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC017933|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC034641|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##NM_173833|SCARA5|286133|scavenger receptor class A, member 5 (putative)##AB075870|C8orf80|389643|chromosome 8 open reading frame 80##NM_001010906|C8orf80|389643|chromosome 8 open reading frame 80##NM_018091|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK302140|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK296475|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK022626|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK295574|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK001284|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK293424|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK315985|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK316053|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK298265|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##BC001240|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AL834273|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AM392633|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)	0.0	0.212716	CTCF.p2:-3:0.213
chr17	62471840	62471923	reg1005871.p1	5.467	+	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	-131227	-	TSC_hg19_v1_chr17_-_62340645 BC036672	-131234	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	-131295	-	AF177201 CU679261 TSC_hg19_v1_chr17_-_62493178 AK307801 BC009194 NM_007215	21256	-	AB451257 AB451382 BT006943 DQ890687 DQ893774 AB384902 TSC_hg19_v1_chr17_-_62502320	30402	-	TSC_hg19_v1_chr17_-_62502393 BC016027 AB209919	30501	-	BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##AF177201|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AK307801|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##BC009194|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##NM_007215|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AB451257|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB451382|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BT006943|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ890687|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ893774|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BC016027|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB209919|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	2.037343	0.0	denovo_WM_7:-106:0.949
chr5	54973908	54973999	reg1009003.p2	5.466	+	BC040295 CU691780 AB000888 BC117133 BC143281 BC168254 TSC_hg19_v1_chr5_-_54830793 AF017116 BC039847 AF014402 AF014403 BC008787 NM_003711 NM_176895	-143285	-	AK291649 AK304788 TSC_hg19_v1_chr5_+_54603828 D29641 BC065258 AB527662	-370119	+	TSC_hg19_v1_chr5_+_54603816 BC104996 BC113509 BC028604	-370147	+	TSC_hg19_v1_chr5_-_55008090 BC101361 BC101362 AK075190	34133	-	TSC_hg19_v1_chr5_-_55008148 AK122957 BC066891 NM_173514	34195	-	NM_001142549 NM_001166533 NM_024415 BC030638 AK308300 AK292417 BC088362 BC047455	59923	+	BC040295|RNF138P1|379013|ring finger protein 138 pseudogene 1##AB000888|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC117133|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC143281|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC168254|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF017116|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC039847|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF014402|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF014403|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC008787|PPAP2A|8611|phosphatidic acid phosphatase type 2A##NM_003711|PPAP2A|8611|phosphatidic acid phosphatase type 2A##NM_176895|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AK291649|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##AK304788|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##D29641|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC065258|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC104996|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC113509|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC028604|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC101361|SLC38A9|153129|solute carrier family 38, member 9##BC101362|SLC38A9|153129|solute carrier family 38, member 9##AK075190|SLC38A9|153129|solute carrier family 38, member 9##AK122957|SLC38A9|153129|solute carrier family 38, member 9##BC066891|SLC38A9|153129|solute carrier family 38, member 9##NM_173514|SLC38A9|153129|solute carrier family 38, member 9##NM_001142549|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##NM_001166533|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##NM_024415|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC030638|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK308300|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK292417|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC088362|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC047455|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	0.995666	0.0	denovo_WM_7:22:0.578
chr8	103823398	103823578	reg1000783.p2	5.466	+	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	-155556	-	BC011538 NM_001032282 S81439	-157396	-	NM_024410 AK315276 BC104456 BC104457	-259627	+	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	52871	-	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	52907	-	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	209779	+	AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	0.677073	0.0	denovo_WM_7:10:0.340
chr22	41872302	41872410	reg1004902.p2	5.465	+	TSC_hg19_v1_chr22_+_41865120 AK293562 AK297213 AK301321 AK314845 AK302691 AK296260 BC026196 BC014092 NM_001098 U80040 CR456365 AB385022 CR536568 CU012932 CU013220 DQ893674 DQ895836	-7225	+	AB489147 CU012956 CU013244 EU446678 TSC_hg19_v1_chr22_-_41864681 BC075808 CR456398 BC007321 NM_032758	-7672	-	TSC_hg19_v1_chr22_-_41842881 NM_016272	-29417	-	TSC_hg19_v1_chr22_-_41940381 AB051452 BC088367 BC017248	67997	-	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	68144	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	84713	+	AK293562|ACO2|50|aconitase 2, mitochondrial##AK297213|ACO2|50|aconitase 2, mitochondrial##AK301321|ACO2|50|aconitase 2, mitochondrial##AK314845|ACO2|50|aconitase 2, mitochondrial##AK302691|ACO2|50|aconitase 2, mitochondrial##AK296260|ACO2|50|aconitase 2, mitochondrial##BC026196|ACO2|50|aconitase 2, mitochondrial##BC014092|ACO2|50|aconitase 2, mitochondrial##NM_001098|ACO2|50|aconitase 2, mitochondrial##U80040|ACO2|50|aconitase 2, mitochondrial##CR456365|ACO2|50|aconitase 2, mitochondrial##CR536568|ACO2|50|aconitase 2, mitochondrial##CU012932|ACO2|50|aconitase 2, mitochondrial##CU013220|ACO2|50|aconitase 2, mitochondrial##DQ893674|ACO2|50|aconitase 2, mitochondrial##DQ895836|ACO2|50|aconitase 2, mitochondrial##CU012956|PHF5A|84844|PHD finger protein 5A##CU013244|PHF5A|84844|PHD finger protein 5A##EU446678|PHF5A|84844|PHD finger protein 5A##BC075808|PHF5A|84844|PHD finger protein 5A##CR456398|PHF5A|84844|PHD finger protein 5A##BC007321|PHF5A|84844|PHD finger protein 5A##NM_032758|PHF5A|84844|PHD finger protein 5A##NM_016272|TOB2|10766|transducer of ERBB2, 2##AB051452|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC088367|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC017248|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding	0.998388	0.0	denovo_WM_7:63:0.229	denovo_WM_7:64:0.229	denovo_WM_7:65:0.229	denovo_WM_7:66:0.229
chr6	106348722	106348859	reg1008156.p1	5.465	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-497795	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-497832	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-497944	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	185406	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	185445	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	198014	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.749868	0.0	denovo_WM_7:41:0.263	denovo_WM_7:45:0.474
chr7	117750332	117750512	reg1006713.p1	5.465	+	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	-236879	-	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	-236941	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	-630384	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	73749	+	NM_019644 AK302407	114312	+	AK307139 AB028967 NM_012281	2163282	+	BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2	0.0	0.0	
chr8	65775845	65775991	reg1003388.p1	5.465	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	-64639	-	TSC_hg19_v1_chr8_+_65493611 AK091333	-282254	+	NM_152414 AK293979	-283060	+	TSC_hg19_v1_chr8_-_66546394 AK001373	770477	-	TSC_hg19_v1_chr8_-_66546404 AK304463	770488	-	TSC_hg19_v1_chr8_-_66546413 BC011607 BC018846 NM_018120	770514	-	BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1##BC011607|ARMC1|55156|armadillo repeat containing 1##BC018846|ARMC1|55156|armadillo repeat containing 1##NM_018120|ARMC1|55156|armadillo repeat containing 1	0.0	0.0	
chrX	110487599	110487753	reg1006042.p1	5.465	+	NM_001128168 NM_001128172 NM_001128173 AB102659 AF068864 AM943850 AM943851 AM943852	-121359	+	NM_002578 TSC_hg19_v1_chrX_+_110339395	-148275	+	AK290504 NM_001128166 NM_001128167 TSC_hg19_v1_chrX_+_110187624 AK315284	-300129	+	TSC_hg19_v1_chrX_-_110513712 AF029232 AK312701	26028	-	AJ000388 TSC_hg19_v1_chrX_-_110513775 NM_014289	26087	-	AJ003112 NM_000555	166697	-	NM_001128168|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##NM_001128172|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##NM_001128173|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AB102659|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AF068864|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AM943850|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AM943851|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AM943852|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##NM_002578|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AK290504|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##NM_001128166|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##NM_001128167|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AK315284|PAK3|5063|p21 protein (Cdc42/Rac)-activated kinase 3##AF029232|CAPN6|827|calpain 6##AK312701|CAPN6|827|calpain 6##AJ000388|CAPN6|827|calpain 6##NM_014289|CAPN6|827|calpain 6##AJ003112|DCX|1641|doublecortin##NM_000555|DCX|1641|doublecortin	0.0	0.995204	CTCF.p2:-8:0.995
chr1	234466056	234466154	reg1007934.p2	5.464	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-116099	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	-425493	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	-716186	+	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	43267	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	148755	-	TSC_hg19_v1_chr1_-_234743489 BC020516	277421	-	BC037878|SLC35F3|148641|solute carrier family 35, member F3##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.984638	0.0	
chr4	109071078	109071228	reg1005296.p1	5.464	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-160080	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-160141	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-160217	+	AK303272 NM_001166119	16761	-	TSC_hg19_v1_chr4_+_109088684 BC020624	17531	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	18646	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	1.865983	0.0	denovo_WM_7:-5:0.290	denovo_WM_7:-32:0.985	denovo_WM_7:-96:0.248
chr13	24368803	24368983	reg1009188.p1	5.463	+	TSC_hg19_v1_chr13_+_24153521 BC035796 NM_001204458 NM_018647 AY358888 AF167555	-215361	+	TSC_hg19_v1_chr13_+_24144402 NM_001204459 NM_148957	-224438	+	TSC_hg19_v1_chr13_-_24007842 NM_014363	-361053	-	TSC_hg19_v1_chr13_+_24463019 BC015452 BC073902 NM_001014442	94123	+	TSC_hg19_v1_chr13_-_24463540 DQ893610 DQ896839 AK291923 U80034 AK225290 AK308908 BC009934 NM_005932	94621	-	NM_001135816 BC142999	94699	+	BC035796|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204458|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_018647|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AY358888|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AF167555|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204459|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_148957|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##BC015452|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC073902|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##NM_001014442|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##DQ893610|MIPEP|4285|mitochondrial intermediate peptidase##DQ896839|MIPEP|4285|mitochondrial intermediate peptidase##AK291923|MIPEP|4285|mitochondrial intermediate peptidase##U80034|MIPEP|4285|mitochondrial intermediate peptidase##AK225290|MIPEP|4285|mitochondrial intermediate peptidase##AK308908|MIPEP|4285|mitochondrial intermediate peptidase##BC009934|MIPEP|4285|mitochondrial intermediate peptidase##NM_005932|MIPEP|4285|mitochondrial intermediate peptidase##NM_001135816|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC142999|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)	0.0	0.0	
chr1	42948493	42948586	reg1005985.p1	5.463	+	TSC_hg19_v1_chr1_+_42928956 AL832217	-19591	+	BC104938 BC112015 NM_001077447 NM_024664 TSC_hg19_v1_chr1_+_42922213 BC062586 BC106064 AK021900	-26341	+	AK301839 BC024186 AK057384 NM_001146192 NM_032257	-26609	-	BC090885 BC101199 BC101200 TSC_hg19_v1_chr1_-_42966086	17479	-	NM_001080850	52020	+	NM_006347 TSC_hg19_v1_chr1_+_43124093 AK310052 AK311979 BC003412 AK309438 AF016371 AF036331 DQ890971 DQ894146 BT019343 CR541899 CR541920	175543	+	AL832217|CCDC30|728621|coiled-coil domain containing 30##BC104938|PPCS|79717|phosphopantothenoylcysteine synthetase##BC112015|PPCS|79717|phosphopantothenoylcysteine synthetase##NM_001077447|PPCS|79717|phosphopantothenoylcysteine synthetase##NM_024664|PPCS|79717|phosphopantothenoylcysteine synthetase##BC062586|PPCS|79717|phosphopantothenoylcysteine synthetase##BC106064|PPCS|79717|phosphopantothenoylcysteine synthetase##AK021900|PPCS|79717|phosphopantothenoylcysteine synthetase##AK301839|ZMYND12|84217|zinc finger, MYND-type containing 12##BC024186|ZMYND12|84217|zinc finger, MYND-type containing 12##AK057384|ZMYND12|84217|zinc finger, MYND-type containing 12##NM_001146192|ZMYND12|84217|zinc finger, MYND-type containing 12##NM_032257|ZMYND12|84217|zinc finger, MYND-type containing 12##BC101199|TMSB4XP1|7115|thymosin beta 4, X-linked pseudogene 1##BC101200|TMSB4XP1|7115|thymosin beta 4, X-linked pseudogene 1##NM_001080850|CCDC30|728621|coiled-coil domain containing 30##NM_006347|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK310052|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK311979|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##BC003412|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK309438|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AF016371|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AF036331|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##DQ890971|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##DQ894146|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##BT019343|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##CR541899|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##CR541920|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)	0.996259	0.0	denovo_WM_7:28:0.764
chr16	67850551	67850658	reg1009073.p1	5.462	+	AF132730 AK303841 BC050693 AK302300 AK301920 NM_018430 BC111018 BC035320 AK027245	-9585	+	TSC_hg19_v1_chr16_-_67840464 BC121176 BC121177 AY337313 NM_020850	-10095	-	TSC_hg19_v1_chr16_-_67840456 AB384605 AB040897 AK055727 AK298806 AK304030 BC099917 AK295171 AK295530	-10200	-	TSC_hg19_v1_chr16_-_67867789 BC007642 BC015202 AK301621 AK125366 AK297570	17161	-	AK225399 TSC_hg19_v1_chr16_-_67867798	17194	-	AK023173 AK300887 TSC_hg19_v1_chr16_-_67867801	17199	-	AF132730|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK303841|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC050693|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK302300|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK301920|TSNAXIP1|55815|translin-associated factor X interacting protein 1##NM_018430|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC111018|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC035320|TSNAXIP1|55815|translin-associated factor X interacting protein 1##AK027245|TSNAXIP1|55815|translin-associated factor X interacting protein 1##BC121176|RANBP10|57610|RAN binding protein 10##BC121177|RANBP10|57610|RAN binding protein 10##AY337313|RANBP10|57610|RAN binding protein 10##NM_020850|RANBP10|57610|RAN binding protein 10##AB040897|RANBP10|57610|RAN binding protein 10##AK055727|RANBP10|57610|RAN binding protein 10##AK298806|RANBP10|57610|RAN binding protein 10##AK304030|RANBP10|57610|RAN binding protein 10##BC099917|RANBP10|57610|RAN binding protein 10##AK295171|RANBP10|57610|RAN binding protein 10##AK295530|RANBP10|57610|RAN binding protein 10##BC007642|CENPT|80152|centromere protein T##BC015202|CENPT|80152|centromere protein T##AK301621|CENPT|80152|centromere protein T##AK125366|CENPT|80152|centromere protein T##AK297570|CENPT|80152|centromere protein T##AK225399|CENPT|80152|centromere protein T##AK023173|CENPT|80152|centromere protein T##AK300887|CENPT|80152|centromere protein T	0.0	1.200837	CTCF.p2:-6:0.998
chr17	64417452	64417600	reg1009125.p1	5.462	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-118599	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-118776	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-192001	-	AK290171 TSC_hg19_v1_chr17_+_64831234	413709	+	BC101633 NM_145811 BC101607 AF361351 AF458898	455894	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	543363	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	1.009695	0.0	
chr6	20092409	20092589	reg1009606.p2	5.462	+	TSC_hg19_v1_chr6_+_19838612 AF085889	-253816	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	-254864	+	AK096832 NM_182757 AB076367 BC063311 AL832329	-1704832	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	120173	-	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	309604	+	CR749285 NM_001243076	311534	+	BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##AK096832|RNF144B|255488|ring finger protein 144B##NM_182757|RNF144B|255488|ring finger protein 144B##AB076367|RNF144B|255488|ring finger protein 144B##BC063311|RNF144B|255488|ring finger protein 144B##AL832329|RNF144B|255488|ring finger protein 144B##BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3	0.0	0.959607	CTCF.p2:-48:0.960
chr7	74341923	74342092	reg1008477.p2	5.462	+	BC052588 TSC_hg19_v1_chr7_+_74306933 BC027480 D38436 D38502 AK309660	-35087	+	TSC_hg19_v1_chr7_-_74306725 BC095487	-35286	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	-35324	-	BC147030 BC147031 NM_001145063	37073	+	AB463349 AF410455 AM392683 DQ893169 TSC_hg19_v1_chr7_-_74489627 AL136804 AK309117 BC007823 BC019008	147595	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	147631	-	BC052588|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##BC027480|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38436|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38502|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##AK309660|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##NM_001145063|GATSL1|389523|GATS protein-like 1##AF410455|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AM392683|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##DQ893169|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AL136804|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK309117|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC007823|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC019008|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16	0.9996	0.0	
chrX	81837811	81837929	reg1012258.p1	5.462	+	TSC_hg19_v1_chrX_+_80457600 BC016709 AL136718 AK129610 AF042081 AK310011 AB590910 CR533478	-1380222	+	TSC_hg19_v1_chrX_+_80457572 AK309351	-1380294	+	AK094058 AX748432 NM_030763	-1380430	-	AK314967 NM_000307 TSC_hg19_v1_chrX_+_82763302 X82324 AB464667	925429	+	BC021669 BC058019 BC070355 BC126461 NM_021118 HQ258477	1278301	+	AB587525 CR536566 AK313240 BC143647 BC143648 NM_014496 TSC_hg19_v1_chrX_-_83443024	1605102	-	BC016709|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AL136718|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK129610|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AF042081|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK310011|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##CR533478|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK314967|POU3F4|5456|POU class 3 homeobox 4##NM_000307|POU3F4|5456|POU class 3 homeobox 4##X82324|POU3F4|5456|POU class 3 homeobox 4##BC021669|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC058019|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC070355|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC126461|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##NM_021118|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##HQ258477|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##CR536566|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##AK313240|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##BC143647|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##BC143648|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##NM_014496|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6	1.975232	0.0	denovo_WM_7:73:0.393	denovo_WM_7:74:0.295	denovo_WM_7:90:0.297	denovo_WM_7:91:0.395
chr11	60077295	60077475	reg1005402.p2	5.461	+	NM_001243266 NM_024021 NM_148975 AK292089 AK075081 TSC_hg19_v1_chr11_+_60048138 BC020648 CU676600 DQ891395 DQ894573 AB022821 AK314033 AB013102	-29292	+	AK291870 NM_001247999 NM_152852	-125247	-	AK301387 TSC_hg19_v1_chr11_-_59950526 AB013104 AF350502 AF350503 AF142409 BC022854 BC108728 AK026454 AF212240 AF237908 AF253977 AF261136 AF354930 AK300725 NM_022349 NM_152851	-126735	-	BC101783 AF333758 AF354931 BC069322 NM_139249 GQ129453 GQ129454 AF354933 BC034588 AF354932	24997	+	AK075106 NM_021201 NM_206938 NM_206939 NM_206940 AK297027 TSC_hg19_v1_chr11_+_60146004 BC043485 AF309653 AK309884	68602	+	TSC_hg19_v1_chr11_+_60146063 BC020673 AF237916 AF201951 AF350501	68674	+	NM_001243266|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_024021|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_148975|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK292089|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK075081|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##BC020648|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ891395|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ894573|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB022821|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK314033|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB013102|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK291870|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_001247999|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_152852|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK301387|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AB013104|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF350502|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF350503|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF142409|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##BC022854|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##BC108728|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK026454|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF212240|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF237908|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF253977|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF261136|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF354930|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK300725|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_022349|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_152851|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##BC101783|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF333758|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354931|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC069322|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##NM_139249|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129453|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129454|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354933|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC034588|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354932|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AK075106|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_021201|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206938|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206939|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206940|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK297027|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF309653|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK309884|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##BC020673|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF237916|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF201951|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF350501|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7	1.976737	0.0	denovo_WM_7:81:0.813
chr14	105530077	105530180	reg1010187.p2	5.461	+	TSC_hg19_v1_chr14_-_105487428 NM_017955 NM_145701	-42704	-	TSC_hg19_v1_chr14_-_105487413 AK303947	-42712	-	TSC_hg19_v1_chr14_-_105487410 AF322239 BC011736 BC025263	-42741	-	TSC_hg19_v1_chr14_-_105531756 AF083955 AX775937 NM_013345 EU543705	1620	-	TSC_hg19_v1_chr14_-_105531768 AB465599 AB465600 AK292142 AK303654 AX775935 AX775841	1645	-	Y14330 AF003521 AF020201 TSC_hg19_v1_chr14_-_105634835 BC032053	104663	-	NM_017955|CDCA4|55038|cell division cycle associated 4##NM_145701|CDCA4|55038|cell division cycle associated 4##AK303947|CDCA4|55038|cell division cycle associated 4##AF322239|CDCA4|55038|cell division cycle associated 4##BC011736|CDCA4|55038|cell division cycle associated 4##BC025263|CDCA4|55038|cell division cycle associated 4##AF083955|GPR132|29933|G protein-coupled receptor 132##NM_013345|GPR132|29933|G protein-coupled receptor 132##EU543705|GPR132|29933|G protein-coupled receptor 132##AB465599|GPR132|29933|G protein-coupled receptor 132##AB465600|GPR132|29933|G protein-coupled receptor 132##AK292142|GPR132|29933|G protein-coupled receptor 132##AK303654|GPR132|29933|G protein-coupled receptor 132##AX775935|GPR132|29933|G protein-coupled receptor 132##AX775841|GPR132|29933|G protein-coupled receptor 132##Y14330|JAG2|3714|jagged 2##AF003521|JAG2|3714|jagged 2##AF020201|JAG2|3714|jagged 2##BC032053|JAG2|3714|jagged 2	0.988158	0.0	denovo_WM_7:56:0.819
chr2	41627353	41627491	reg1009237.p1	5.461	+	Y12878 Y12885 AK291696 BX537482 NM_001112802	-887850	-	Y13032 BX648299 TSC_hg19_v1_chr2_-_40679231	-948200	-	AF108388 AF108389 M96368 AF128524 NM_001112800 NM_001112801 NM_001252624 NM_021097	-969991	-	AK124893 NM_001242815	553520	-	TSC_hg19_v1_chr2_+_42275160 NM_138370	647710	+	AB528999 TSC_hg19_v1_chr2_+_42275979	648539	+	Y12878|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y12885|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK291696|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX537482|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112802|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y13032|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX648299|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108388|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108389|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##M96368|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF128524|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112800|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112801|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001252624|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_021097|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)	0.999416	0.994046	CTCF.p2:-10:0.994	denovo_WM_7:31:0.307	denovo_WM_7:32:0.307	denovo_WM_7:33:0.307
chr5	86412986	86413139	reg1009040.p1	5.461	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-499245	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-499304	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2732398	-	TSC_hg19_v1_chr5_+_86563706 CR749722	150623	+	TSC_hg19_v1_chr5_+_86563831 BC131816	150764	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	151004	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.991012	0.0	denovo_WM_7:-30:0.248	denovo_WM_7:-31:0.248	denovo_WM_7:-32:0.248	denovo_WM_7:-33:0.248
chr9	10208494	10208589	reg1007617.p1	5.461	+	TSC_hg19_v1_chr9_+_8858136 AK094342	-1350408	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-1474622	-	TSC_hg19_v1_chr9_+_8713275 AY779046	-1495249	+	BC028038 NM_002839	404181	-	NM_000550 X51420 BC052608	2484884	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	2566475	+	BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##AY779046|RPL18A|6142|ribosomal protein L18a##BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150	0.099018	0.0	
chr1	24677876	24677994	reg1006858.p2	5.460	+	AY231160 AY231161 NM_021180	-28406	+	AK074386 TSC_hg19_v1_chr1_+_24645958 AK315164 BC036890 NM_001195010	-31951	+	NM_198173 NM_198174 TSC_hg19_v1_chr1_+_24645846	-32107	+	TSC_hg19_v1_chr1_-_24740273 AK090659 AK299401 AX746563 BC035061 NM_001199013 NM_001199014 NM_178122	62287	-	BC040212 NM_001199012	63651	-	NM_020448 TSC_hg19_v1_chr1_+_24742291 AK312433 BX640883 BC012492 BC001265 BC063583 U90918	64368	+	AY231160|GRHL3|57822|grainyhead-like 3 (Drosophila)##AY231161|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_021180|GRHL3|57822|grainyhead-like 3 (Drosophila)##AK074386|GRHL3|57822|grainyhead-like 3 (Drosophila)##AK315164|GRHL3|57822|grainyhead-like 3 (Drosophila)##BC036890|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_001195010|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_198173|GRHL3|57822|grainyhead-like 3 (Drosophila)##NM_198174|GRHL3|57822|grainyhead-like 3 (Drosophila)##AK299401|C1orf201|90529|chromosome 1 open reading frame 201##BC035061|C1orf201|90529|chromosome 1 open reading frame 201##NM_001199013|C1orf201|90529|chromosome 1 open reading frame 201##NM_001199014|C1orf201|90529|chromosome 1 open reading frame 201##NM_178122|C1orf201|90529|chromosome 1 open reading frame 201##BC040212|C1orf201|90529|chromosome 1 open reading frame 201##NM_001199012|C1orf201|90529|chromosome 1 open reading frame 201##NM_020448|NIPAL3|57185|NIPA-like domain containing 3##AK312433|NIPAL3|57185|NIPA-like domain containing 3##BX640883|NIPAL3|57185|NIPA-like domain containing 3##BC012492|NIPAL3|57185|NIPA-like domain containing 3##BC001265|NIPAL3|57185|NIPA-like domain containing 3##BC063583|NIPAL3|57185|NIPA-like domain containing 3##U90918|NIPAL3|57185|NIPA-like domain containing 3	0.045011	0.0	
chr16	29765775	29765883	reg1000996.p1	5.460	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	-8528	-	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-75347	+	AK293195 NM_014298 TSC_hg19_v1_chr16_+_29690460	-75435	+	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	23757	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	36222	+	TSC_hg19_v1_chr16_+_29802074 AK316389 BC028155 BT007259 DQ890771 DQ893652 DQ893932 DQ895829	36258	+	BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK293195|QPRT|23475|quinolinate phosphoribosyltransferase##NM_014298|QPRT|23475|quinolinate phosphoribosyltransferase##NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22##AK316389|KIF22|3835|kinesin family member 22##BC028155|KIF22|3835|kinesin family member 22##BT007259|KIF22|3835|kinesin family member 22##DQ890771|KIF22|3835|kinesin family member 22##DQ893652|KIF22|3835|kinesin family member 22##DQ893932|KIF22|3835|kinesin family member 22##DQ895829|KIF22|3835|kinesin family member 22	0.835605	0.0	denovo_WM_7:-23:0.301	denovo_WM_7:-24:0.491
chr20	48317951	48318095	reg1008528.p1	5.460	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-133334	-	BC110572 BC110573 NM_004975	-218844	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-422828	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	12207	-	AB004550 TSC_hg19_v1_chr20_-_48330359	12333	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	12443	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.155061	0.0	
chr5	133966507	133966687	reg1007753.p1	5.460	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-104792	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-105234	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-124307	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	1900	-	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	17834	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	107713	+	D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand	2.859034	0.0	denovo_WM_7:3:0.278	denovo_WM_7:-14:0.597	denovo_WM_7:-30:0.554
chr12	121903886	121904023	reg1008361.p2	5.458	+	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-65990	+	AK025614 NM_001137559	-111943	-	TSC_hg19_v1_chr12_-_121790244 NM_016237	-113688	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	1120	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	114305	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	114960	-	AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##NM_016237|ANAPC5|51433|anaphase promoting complex subunit 5##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B	0.990546	0.0	denovo_WM_7:-9:0.767
chr12	876318	876460	reg1009640.p2	5.458	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-13633	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	-14233	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-103674	-	BC013629 TSC_hg19_v1_chr12_+_1017145	140693	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	182437	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	224063	+	AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1	1.99431	0.0	denovo_WM_7:19:0.284	denovo_WM_7:20:0.237	denovo_WM_7:38:0.238	denovo_WM_7:39:0.285
chr1	3582858	3583038	reg1000575.p3	5.458	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-13822	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-16332	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-41339	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	24310	+	AK310432 NM_001204192 AK302118	31667	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	80969	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	0.0	0.0	
chr2	86448313	86448470	reg1010643.p1	5.458	+	NM_016622 NM_145644 TSC_hg19_v1_chr2_+_86426604 BC020651 AK074352 AK314555 AK314577 AF208849 AL832982 CU676602	-21807	+	NM_001100169 NM_001100170 NM_006839	-25499	-	TSC_hg19_v1_chr2_-_86422614 BX537369 L42572	-25736	-	AY562239 CR457301 CU687956 AK297201 TSC_hg19_v1_chr2_-_86564750 BC064846 AK294300 AK297359 AK297373 AK299334 AK023172 NM_001164731 NM_001164732 NM_022912	116342	-	AK297287 NM_001164730	116814	-	NM_018433	219879	+	NM_016622|MRPL35|51318|mitochondrial ribosomal protein L35##NM_145644|MRPL35|51318|mitochondrial ribosomal protein L35##BC020651|MRPL35|51318|mitochondrial ribosomal protein L35##AK074352|MRPL35|51318|mitochondrial ribosomal protein L35##AK314555|MRPL35|51318|mitochondrial ribosomal protein L35##AK314577|MRPL35|51318|mitochondrial ribosomal protein L35##AF208849|MRPL35|51318|mitochondrial ribosomal protein L35##AL832982|MRPL35|51318|mitochondrial ribosomal protein L35##NM_001100169|IMMT|10989|inner membrane protein, mitochondrial##NM_001100170|IMMT|10989|inner membrane protein, mitochondrial##NM_006839|IMMT|10989|inner membrane protein, mitochondrial##BX537369|IMMT|10989|inner membrane protein, mitochondrial##L42572|IMMT|10989|inner membrane protein, mitochondrial##AY562239|REEP1|65055|receptor accessory protein 1##CR457301|REEP1|65055|receptor accessory protein 1##AK297201|REEP1|65055|receptor accessory protein 1##BC064846|REEP1|65055|receptor accessory protein 1##AK294300|REEP1|65055|receptor accessory protein 1##AK297359|REEP1|65055|receptor accessory protein 1##AK297373|REEP1|65055|receptor accessory protein 1##AK299334|REEP1|65055|receptor accessory protein 1##AK023172|REEP1|65055|receptor accessory protein 1##NM_001164731|REEP1|65055|receptor accessory protein 1##NM_001164732|REEP1|65055|receptor accessory protein 1##NM_022912|REEP1|65055|receptor accessory protein 1##AK297287|REEP1|65055|receptor accessory protein 1##NM_001164730|REEP1|65055|receptor accessory protein 1##NM_018433|KDM3A|55818|lysine (K)-specific demethylase 3A	0.028176	0.015136	
chr3	149321602	149321732	reg1007421.p2	5.458	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-129178	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-129265	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-226125	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	54068	-	AK022036 NM_001168278	99392	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	148572	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.999519	0.0	
chr14	100539546	100539726	reg1010417.p2	5.457	+	TSC_hg19_v1_chr14_+_100531768 AF087843 BC032358 AF052504	-7841	+	TSC_hg19_v1_chr14_+_100531758 NM_016337 AK301379	-7884	+	AK295919 TSC_hg19_v1_chr14_+_100485800	-53877	+	AF131766 TSC_hg19_v1_chr14_+_100563847	24197	+	AY541700 BC063598 TSC_hg19_v1_chr14_-_100626009 NM_206918	86335	-	NM_003403 TSC_hg19_v1_chr14_+_100705177	165506	+	AF087843|EVL|51466|Enah/Vasp-like##BC032358|EVL|51466|Enah/Vasp-like##AF052504|EVL|51466|Enah/Vasp-like##NM_016337|EVL|51466|Enah/Vasp-like##AK301379|EVL|51466|Enah/Vasp-like##AK295919|EVL|51466|Enah/Vasp-like##AF131766|EVL|51466|Enah/Vasp-like##AY541700|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##BC063598|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##NM_206918|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##NM_003403|YY1|7528|YY1 transcription factor	0.995966	0.0	denovo_WM_7:29:0.437	denovo_WM_7:30:0.438
chr14	55556431	55556533	reg1008693.p2	5.457	+	AK025580 TSC_hg19_v1_chr14_+_55518408 BC015621	-38051	+	TSC_hg19_v1_chr14_+_55518382 AL834285	-38105	+	TSC_hg19_v1_chr14_+_55518364 NM_144578 AK315501	-38142	+	TSC_hg19_v1_chr14_+_55595963 NM_001177388 NM_002306 AK314929	39466	+	TSC_hg19_v1_chr14_+_55595969 AB006780 BC053667 BC068068 M36682 BC001120 M35368 M57710	39503	+	TSC_hg19_v1_chr14_-_55650349 BT007344	93924	-	AK025580|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##BC015621|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AL834285|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##NM_144578|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AK315501|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##NM_001177388|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_002306|LGALS3|3958|lectin, galactoside-binding, soluble, 3##AK314929|LGALS3|3958|lectin, galactoside-binding, soluble, 3##AB006780|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC053667|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC068068|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M36682|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC001120|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M35368|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M57710|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BT007344|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5	0.998675	0.998291	CTCF.p2:-14:0.998
chr1	85156283	85156439	reg1007822.p1	5.457	+	AY367055 TSC_hg19_v1_chr1_-_85156128 AK316472 AK307336 BC064389 BC033637 AK294057 AK292475 NM_001166295 NM_001166417 AL133046 AB023140 NM_001166293 NM_001166294 NM_014021	-285	-	TSC_hg19_v1_chr1_-_85040102 CU692842 M95767 AK075423 BC065191 AK298703 AK314640 BC126333 BC126335 BC024007 BC096752 NM_004388	-116255	-	TSC_hg19_v1_chr1_-_84972262 NM_005274	-184092	-	TSC_hg19_v1_chr1_-_85358890 AK308283 NM_012152	202525	-	BC104891 BC104893 TSC_hg19_v1_chr1_-_85462793 AK094010 AK309858 AX748410 NM_153259	306347	-	AF475085 AK001868 BC060765 TSC_hg19_v1_chr1_-_85514153 AK292206	357784	-	AY367055|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK316472|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK307336|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC064389|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC033637|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK294057|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK292475|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166295|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166417|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AL133046|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AB023140|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166293|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166294|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_014021|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##M95767|CTBS|1486|chitobiase, di-N-acetyl-##AK075423|CTBS|1486|chitobiase, di-N-acetyl-##BC065191|CTBS|1486|chitobiase, di-N-acetyl-##AK298703|CTBS|1486|chitobiase, di-N-acetyl-##AK314640|CTBS|1486|chitobiase, di-N-acetyl-##BC126333|CTBS|1486|chitobiase, di-N-acetyl-##BC126335|CTBS|1486|chitobiase, di-N-acetyl-##BC024007|CTBS|1486|chitobiase, di-N-acetyl-##BC096752|CTBS|1486|chitobiase, di-N-acetyl-##NM_004388|CTBS|1486|chitobiase, di-N-acetyl-##NM_005274|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##AK308283|LPAR3|23566|lysophosphatidic acid receptor 3##NM_012152|LPAR3|23566|lysophosphatidic acid receptor 3##BC104891|MCOLN2|255231|mucolipin 2##BC104893|MCOLN2|255231|mucolipin 2##AK094010|MCOLN2|255231|mucolipin 2##AK309858|MCOLN2|255231|mucolipin 2##NM_153259|MCOLN2|255231|mucolipin 2##AF475085|MCOLN3|55283|mucolipin 3##AK001868|MCOLN3|55283|mucolipin 3##BC060765|MCOLN3|55283|mucolipin 3##AK292206|MCOLN3|55283|mucolipin 3	0.0	0.0	
chrX	48756112	48756271	reg1007398.p2	5.457	+	NM_001167992 AJ973593 AJ973594 AJ973595 AJ973596 AJ973597 AJ973598 AJ973599 AJ973600 AJ973602 AJ973603 AJ973604 AJ973605 AJ973606 AJ973607 AJ973601 AB041833 AB041834 AB041835 AB041836 AB385557 CU680304 DQ892221 DQ894883	-408	+	AJ005893 NM_001032384 NM_005710	-655	+	AF034790 NM_001167947 NM_005834 TSC_hg19_v1_chrX_-_48755431	-761	-	CR450287 D88146 NM_005660 AK225508 AK290284 AK293415 AK293419 AK298484 AK299748 TSC_hg19_v1_chrX_-_48768926 BC035747 NM_001032289 AK292816	12740	-	D84454 NM_001042498	13043	-	U77735 BC018111 AK312745 TSC_hg19_v1_chrX_-_48776302 AK290931 NM_006875	20156	-	NM_001167992|PQBP1|10084|polyglutamine binding protein 1##AJ973593|PQBP1|10084|polyglutamine binding protein 1##AJ973594|PQBP1|10084|polyglutamine binding protein 1##AJ973595|PQBP1|10084|polyglutamine binding protein 1##AJ973596|PQBP1|10084|polyglutamine binding protein 1##AJ973597|PQBP1|10084|polyglutamine binding protein 1##AJ973598|PQBP1|10084|polyglutamine binding protein 1##AJ973599|PQBP1|10084|polyglutamine binding protein 1##AJ973600|PQBP1|10084|polyglutamine binding protein 1##AJ973602|PQBP1|10084|polyglutamine binding protein 1##AJ973603|PQBP1|10084|polyglutamine binding protein 1##AJ973604|PQBP1|10084|polyglutamine binding protein 1##AJ973605|PQBP1|10084|polyglutamine binding protein 1##AJ973606|PQBP1|10084|polyglutamine binding protein 1##AJ973607|PQBP1|10084|polyglutamine binding protein 1##AJ973601|PQBP1|10084|polyglutamine binding protein 1##AB041833|PQBP1|10084|polyglutamine binding protein 1##AB041834|PQBP1|10084|polyglutamine binding protein 1##AB041835|PQBP1|10084|polyglutamine binding protein 1##AB041836|PQBP1|10084|polyglutamine binding protein 1##DQ892221|PQBP1|10084|polyglutamine binding protein 1##DQ894883|PQBP1|10084|polyglutamine binding protein 1##AJ005893|PQBP1|10084|polyglutamine binding protein 1##NM_001032384|PQBP1|10084|polyglutamine binding protein 1##NM_005710|PQBP1|10084|polyglutamine binding protein 1##AF034790|TIMM17B|10245|translocase of inner mitochondrial membrane 17 homolog B (yeast)##NM_001167947|TIMM17B|10245|translocase of inner mitochondrial membrane 17 homolog B (yeast)##NM_005834|TIMM17B|10245|translocase of inner mitochondrial membrane 17 homolog B (yeast)##CR450287|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D88146|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_005660|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK225508|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK290284|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293415|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293419|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK298484|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK299748|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC035747|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001032289|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK292816|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D84454|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001042498|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##U77735|PIM2|11040|pim-2 oncogene##BC018111|PIM2|11040|pim-2 oncogene##AK312745|PIM2|11040|pim-2 oncogene##AK290931|PIM2|11040|pim-2 oncogene##NM_006875|PIM2|11040|pim-2 oncogene	1.990052	0.0	denovo_WM_7:-96:0.378	denovo_WM_7:-97:0.288
chr10	16812886	16813042	reg1009474.p2	5.456	+	NM_001010908	-248961	-	AK314910 BC015092 NM_001001484 NM_030664 BC050411 BX648556 AK095486 TSC_hg19_v1_chr10_+_16479008 AF212237	-333979	+	BC061585 TSC_hg19_v1_chr10_-_15902498 AF176916 AL833873 BC020605 BC067799 AK023459 NM_024948	-910473	-	TSC_hg19_v1_chr10_-_16859375 AK292911 BC008691	46395	-	TSC_hg19_v1_chr10_-_16859397 AK225681 AK312520	46430	-	TSC_hg19_v1_chr10_-_16859451 BC015644 BC005993 BC107898 BX647733 NM_012425 NM_152724	46471	-	NM_001010908|C1QL3|389941|complement component 1, q subcomponent-like 3##AK314910|PTER|9317|phosphotriesterase related##BC015092|PTER|9317|phosphotriesterase related##NM_001001484|PTER|9317|phosphotriesterase related##NM_030664|PTER|9317|phosphotriesterase related##BC050411|PTER|9317|phosphotriesterase related##BX648556|PTER|9317|phosphotriesterase related##AK095486|PTER|9317|phosphotriesterase related##AF212237|PTER|9317|phosphotriesterase related##BC061585|FAM188A|80013|family with sequence similarity 188, member A##AF176916|FAM188A|80013|family with sequence similarity 188, member A##AL833873|FAM188A|80013|family with sequence similarity 188, member A##BC020605|FAM188A|80013|family with sequence similarity 188, member A##BC067799|FAM188A|80013|family with sequence similarity 188, member A##AK023459|FAM188A|80013|family with sequence similarity 188, member A##NM_024948|FAM188A|80013|family with sequence similarity 188, member A##AK292911|RSU1|6251|Ras suppressor protein 1##BC008691|RSU1|6251|Ras suppressor protein 1##AK225681|RSU1|6251|Ras suppressor protein 1##AK312520|RSU1|6251|Ras suppressor protein 1##BC015644|RSU1|6251|Ras suppressor protein 1##BC005993|RSU1|6251|Ras suppressor protein 1##BC107898|RSU1|6251|Ras suppressor protein 1##BX647733|RSU1|6251|Ras suppressor protein 1##NM_012425|RSU1|6251|Ras suppressor protein 1##NM_152724|RSU1|6251|Ras suppressor protein 1	0.999189	0.0	
chr12	80235662	80235842	reg1009347.p2	5.456	+	U63809 TSC_hg19_v1_chr12_-_80084784 NM_002583	-150987	-	AB590922 CR536549 BC007018 TSC_hg19_v1_chr12_-_80084318	-151537	-	CR627387 NM_001135806 AK308743	-796301	+	AK302692 NM_001143886	71938	-	TSC_hg19_v1_chr12_-_80328878 BC062560 AY380574 BC111752 D87930 AK314193 NM_001244992 BC047898 BC000812	93048	-	TSC_hg19_v1_chr12_-_80328937 NM_002480	93214	-	U63809|PAWR|5074|PRKC, apoptosis, WT1, regulator##NM_002583|PAWR|5074|PRKC, apoptosis, WT1, regulator##CR536549|PAWR|5074|PRKC, apoptosis, WT1, regulator##BC007018|PAWR|5074|PRKC, apoptosis, WT1, regulator##CR627387|SYT1|6857|synaptotagmin I##NM_001135806|SYT1|6857|synaptotagmin I##AK308743|SYT1|6857|synaptotagmin I##AK302692|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001143886|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC062560|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##AY380574|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC111752|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##D87930|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##AK314193|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_001244992|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC047898|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##BC000812|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A##NM_002480|PPP1R12A|4659|protein phosphatase 1, regulatory subunit 12A	0.443785	0.0	
chr2	30934588	30934704	reg1010993.p1	5.456	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	-264498	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	-480144	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-564770	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	95647	-	AK122747 NM_001253827	417851	-	AY358758 AK225808 TSC_hg19_v1_chr2_-_31361308	426652	-	BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13##AK122747|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253827|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AY358758|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AK225808|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)	0.0	0.392848	CTCF.p2:-21:0.370
chr3	152788421	152788570	reg1007775.p1	5.456	+	NM_002563 Z49205	-235760	+	AY358260 NM_001123228	-729717	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-771302	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	91531	+	TSC_hg19_v1_chr3_+_152880058 BC012362	91553	+	AF086445 NM_001101337	413788	+	NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family##AF086445|C3orf79|152118|chromosome 3 open reading frame 79##NM_001101337|C3orf79|152118|chromosome 3 open reading frame 79	0.998801	0.0	denovo_WM_7:-34:0.307	denovo_WM_7:-35:0.307	denovo_WM_7:-36:0.307
chr5	89481286	89481437	reg1011786.p1	5.456	+	AL833268 AL833274 NM_001131005 NM_001193347	-1281467	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1296097	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-1296241	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	224178	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	288821	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	289217	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.993766	0.313066	CTCF.p2:-12:0.313
chr19	48103332	48103512	reg1002861.p1	5.455	+	NM_001101419	-44310	-	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-85007	-	BC007432 TSC_hg19_v1_chr19_-_48018290 AK292244 AK310114 AY927608 BC001165 AY927609 BC091511	-85126	-	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	8022	+	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	113228	+	NM_015710 TSC_hg19_v1_chr19_+_48248797	145372	+	NM_001101419|ZNF541|84215|zinc finger protein 541##BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC007432|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK292244|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310114|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC001165|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AY927609|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC091511|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2##NM_015710|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2	1.019741	0.0	denovo_WM_7:-33:0.264	denovo_WM_7:-34:0.707
chr9	37033989	37034123	reg1005013.p1	5.455	+	TSC_hg19_v1_chr9_+_36572891 AK222811 AK296820 D79997 AK302374 AK293284 AK293423 AK300761 AK293447 AK309470 BC014039 NM_014791 AB183428 AK299164 AK300821 AB183427 AK301131	-461132	+	TSC_hg19_v1_chr9_-_36401191 NM_194330	-632881	-	TSC_hg19_v1_chr9_-_36400891 AK093480 AX748155 AF394047 NM_194328 NM_194332	-633159	-	TSC_hg19_v1_chr9_-_37034361 NM_016734	360	-	TSC_hg19_v1_chr9_+_37079908 AK091718	45850	+	TSC_hg19_v1_chr9_+_37080004 BC032471 BC033624 BC080614 BC067112	45952	+	AK222811|MELK|9833|maternal embryonic leucine zipper kinase##AK296820|MELK|9833|maternal embryonic leucine zipper kinase##D79997|MELK|9833|maternal embryonic leucine zipper kinase##AK302374|MELK|9833|maternal embryonic leucine zipper kinase##AK293284|MELK|9833|maternal embryonic leucine zipper kinase##AK293423|MELK|9833|maternal embryonic leucine zipper kinase##AK300761|MELK|9833|maternal embryonic leucine zipper kinase##AK293447|MELK|9833|maternal embryonic leucine zipper kinase##AK309470|MELK|9833|maternal embryonic leucine zipper kinase##BC014039|MELK|9833|maternal embryonic leucine zipper kinase##NM_014791|MELK|9833|maternal embryonic leucine zipper kinase##AB183428|MELK|9833|maternal embryonic leucine zipper kinase##AK299164|MELK|9833|maternal embryonic leucine zipper kinase##AK300821|MELK|9833|maternal embryonic leucine zipper kinase##AB183427|MELK|9833|maternal embryonic leucine zipper kinase##AK301131|MELK|9833|maternal embryonic leucine zipper kinase##NM_194330|RNF38|152006|ring finger protein 38##AK093480|RNF38|152006|ring finger protein 38##AX748155|RNF38|152006|ring finger protein 38##AF394047|RNF38|152006|ring finger protein 38##NM_194328|RNF38|152006|ring finger protein 38##NM_194332|RNF38|152006|ring finger protein 38##NM_016734|PAX5|5079|paired box 5##AK091718|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC032471|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC033624|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene##BC080614|LOC100506710|100506710|endogenous Bornavirus-like nucleoprotein 2 pseudogene	1.99587	0.0	denovo_WM_7:42:0.531	denovo_WM_7:60:0.277
chr17	46505118	46505298	reg1006487.p2	5.454	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-320056	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-320223	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-326387	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	2330	-	TSC_hg19_v1_chr17_-_46507604 BC039040	2409	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	103063	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	0.0	0.0	
chr2	21454996	21455102	reg1009378.p1	5.454	+	TSC_hg19_v1_chr2_-_21266940 AK290844 NM_000384 X04506 X04714	-188120	-	TSC_hg19_v1_chr2_-_21266896 J02610 M12681	-188150	-	TSC_hg19_v1_chr2_-_21266818 AB587530 HM487065 M14081 M14162 BC051278	-188228	-	NM_052920	2153248	+	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	2694897	-	TSC_hg19_v1_chr2_+_24150144 BC037901	2695108	+	AK290844|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_000384|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04506|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04714|APOB|338|apolipoprotein B (including Ag(x) antigen)##J02610|APOB|338|apolipoprotein B (including Ag(x) antigen)##M12681|APOB|338|apolipoprotein B (including Ag(x) antigen)##HM487065|APOB|338|apolipoprotein B (including Ag(x) antigen)##M14081|APOB|338|apolipoprotein B (including Ag(x) antigen)##M14162|APOB|338|apolipoprotein B (including Ag(x) antigen)##BC051278|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037901|UBXN2A|165324|UBX domain protein 2A	0.988781	0.0	denovo_WM_7:5:0.989
chr6_cox_hap2	4055252	4055402	reg1009854.p1	5.454	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.961662	0.0	denovo_WM_7:-40:0.975	denovo_WM_7:-61:0.808
chr9	131938191	131938319	reg1001851.p1	5.454	+	AK310328 TSC_hg19_v1_chr9_+_131902359	-35945	+	TSC_hg19_v1_chr9_+_131901694 AK293296	-36536	+	TSC_hg19_v1_chr9_+_131873871 AK297202 AB464103 BT020119 CU678032 DQ892154 DQ894879 DQ895349 AK307424 NM_001193397	-64396	+	TSC_hg19_v1_chr9_-_131940534 BC064028	2252	-	TSC_hg19_v1_chr9_-_131940541 NM_203434	2285	-	AK092588 AX747616 NM_001012715 BC132699 BC132701	145040	+	AK310328|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK297202|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##BT020119|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##DQ892154|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##DQ894879|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##DQ895349|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK307424|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##NM_001193397|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##BC064028|IER5L|389792|immediate early response 5-like##NM_203434|IER5L|389792|immediate early response 5-like##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106	0.0	0.0	
chr17	57513146	57513258	reg1007644.p2	5.453	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	-104184	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	-215304	+	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	-225805	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	129785	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	183843	+	TSC_hg19_v1_chr17_+_57697265 BC054489 BX640615	184068	+	NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_004859|CLTC|1213|clathrin, heavy chain (Hc)##BC054489|CLTC|1213|clathrin, heavy chain (Hc)##BX640615|CLTC|1213|clathrin, heavy chain (Hc)	0.999494	0.0	
chr18	13577432	13577588	reg1007035.p2	5.453	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-358725	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-586165	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-629446	+	NM_001003674 NM_001003675	34154	+	AF009426 AF009427 NM_004338 NM_181483	43356	+	TSC_hg19_v1_chr18_-_13726549 AK055618	148996	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr3	125502102	125502213	reg1008962.p2	5.453	+	TSC_hg19_v1_chr3_-_125314371 NM_022776	-187784	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	-263104	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	-263126	-	TSC_hg19_v1_chr3_+_125635451 BC032772 BC041080	133299	+	BC073816 NM_001015050 NM_001195223	153726	-	AF231410 NM_001012337 BC141849 AK302014	185897	+	NM_022776|OSBPL11|114885|oxysterol binding protein-like 11##NM_003794|SNX4|8723|sorting nexin 4##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##BC032772|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC041080|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC073816|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001015050|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001195223|ALG1L|200810|asparagine-linked glycosylation 1-like##AF231410|ROPN1B|152015|rhophilin associated tail protein 1B##NM_001012337|ROPN1B|152015|rhophilin associated tail protein 1B##BC141849|ROPN1B|152015|rhophilin associated tail protein 1B	0.991459	0.0	denovo_WM_7:-39:0.439	denovo_WM_7:-40:0.439
chr16	68452198	68452326	reg1008393.p2	5.452	+	TSC_hg19_v1_chr16_+_68344946 NM_001184824 NM_019023 AK001502 AK304605 AK056647	-107303	+	TSC_hg19_v1_chr16_-_68344850 BC013778 AK023353 AK091674 AK225712 AY078070 NM_032178	-107436	-	TSC_hg19_v1_chr16_+_68298430 NM_001076785 NM_003983 CR749291 CR749475 AK310866 BC028216	-153812	+	TSC_hg19_v1_chr16_-_68482409 AK289651 NM_018667 BC041828	30219	-	TSC_hg19_v1_chr16_+_68564035 BC040871	111771	+	BC140886 BC140887 TSC_hg19_v1_chr16_+_68573199 AX721106 AX721146 AK316251 AK074332 AK304152 BC040486	120936	+	NM_001184824|PRMT7|54496|protein arginine methyltransferase 7##NM_019023|PRMT7|54496|protein arginine methyltransferase 7##AK001502|PRMT7|54496|protein arginine methyltransferase 7##AK304605|PRMT7|54496|protein arginine methyltransferase 7##AK056647|PRMT7|54496|protein arginine methyltransferase 7##BC013778|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK023353|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK091674|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK225712|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AY078070|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_032178|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_001076785|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##NM_003983|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749291|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749475|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AK310866|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##BC028216|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AK289651|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_018667|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC041828|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC040871|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC140886|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC140887|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK316251|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK074332|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK304152|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC040486|ZFP90|146198|zinc finger protein 90 homolog (mouse)	0.990471	0.0	denovo_WM_7:15:0.572	denovo_WM_7:16:0.285
chr20	49426990	49427170	reg1009069.p1	5.452	+	AF361220 NM_001010974 NM_017843 NM_198799 TSC_hg19_v1_chr20_+_49411542 AK000502 BC038381 BC047337 AJ511266 BC056883	-15562	+	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	-79011	+	TSC_hg19_v1_chr20_-_49308074 AK124347	-119003	-	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	120643	-	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	147983	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	148288	+	AF361220|BCAS4|55653|breast carcinoma amplified sequence 4##NM_001010974|BCAS4|55653|breast carcinoma amplified sequence 4##NM_017843|BCAS4|55653|breast carcinoma amplified sequence 4##NM_198799|BCAS4|55653|breast carcinoma amplified sequence 4##AK000502|BCAS4|55653|breast carcinoma amplified sequence 4##BC038381|BCAS4|55653|breast carcinoma amplified sequence 4##BC047337|BCAS4|55653|breast carcinoma amplified sequence 4##AJ511266|BCAS4|55653|breast carcinoma amplified sequence 4##BC056883|BCAS4|55653|breast carcinoma amplified sequence 4##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3	0.98512	0.0	denovo_WM_7:54:0.492	denovo_WM_7:55:0.493
chr7	75028771	75028917	reg1009494.p1	5.452	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	-3879	+	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	-40274	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-161324	-	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	10810	+	AB354586 TSC_hg19_v1_chr7_-_75072021	43167	-	TSC_hg19_v1_chr7_-_75115568 BC082993 NM_001099415	86725	-	AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AB354586|POM121C|100101267|POM121 membrane glycoprotein C##BC082993|POM121C|100101267|POM121 membrane glycoprotein C##NM_001099415|POM121C|100101267|POM121 membrane glycoprotein C	0.971314	0.0	denovo_WM_7:41:0.919
chr20	49105042	49105222	reg1001690.p3	5.451	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-297502	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-297751	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-297939	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	21744	+	TSC_hg19_v1_chr20_+_49126916 AK316563	21781	+	AK299830 TSC_hg19_v1_chr20_+_49126919	21787	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	0.0	0.0	
chr6	112074813	112074913	reg1005624.p1	5.451	+	AB451293 AB451426 AB528738 CU689398 S74774 NM_153047	-33605	-	NM_001164281 NM_147686	-147390	-	TSC_hg19_v1_chr6_-_111927082 AL050289 AK310141 AF136406 AF136407	-147691	-	BC032496 NM_153048	5445	-	M14676 TSC_hg19_v1_chr6_-_112194641 M14333	119672	-	TSC_hg19_v1_chr6_-_112194648 NM_002037	119792	-	AB451293|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451426|FYN|2534|FYN oncogene related to SRC, FGR, YES##S74774|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153047|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_001164281|TRAF3IP2|10758|TRAF3 interacting protein 2##NM_147686|TRAF3IP2|10758|TRAF3 interacting protein 2##AL050289|TRAF3IP2|10758|TRAF3 interacting protein 2##AK310141|TRAF3IP2|10758|TRAF3 interacting protein 2##AF136406|TRAF3IP2|10758|TRAF3 interacting protein 2##AF136407|TRAF3IP2|10758|TRAF3 interacting protein 2##BC032496|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153048|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14676|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14333|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_002037|FYN|2534|FYN oncogene related to SRC, FGR, YES	0.995535	0.0	denovo_WM_7:-15:0.982
chr6	139214068	139214248	reg1000676.p1	5.451	+	NM_001077706 NM_001195037	-96911	+	AK092592 AX747618 NM_001242740	-119357	-	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	-119368	+	BC021211 TSC_hg19_v1_chr6_-_139309122 AB209143	94919	-	TSC_hg19_v1_chr6_-_139309357 BC035286 AK312938	95190	-	TSC_hg19_v1_chr6_-_139309391 BC012764 NM_001128617 NM_031922	95252	-	NM_001077706|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##NM_001195037|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##AK092592|LOC100507462|100507462|uncharacterized LOC100507462##NM_001242740|LOC100507462|100507462|uncharacterized LOC100507462##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A##BC021211|REPS1|85021|RALBP1 associated Eps domain containing 1##AB209143|REPS1|85021|RALBP1 associated Eps domain containing 1##BC035286|REPS1|85021|RALBP1 associated Eps domain containing 1##AK312938|REPS1|85021|RALBP1 associated Eps domain containing 1##BC012764|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_001128617|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_031922|REPS1|85021|RALBP1 associated Eps domain containing 1	0.0	0.0	
chr1	205709086	205709214	reg1011326.p1	5.450	+	AK313479 TSC_hg19_v1_chr1_-_205649636 AK290364 FJ805258 FJ805259 FJ805260 FJ805261 NM_033102 EF632109	-59469	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	-59582	-	NM_001973 NM_021795	-107151	-	TSC_hg19_v1_chr1_-_205719084 CR457339 AB528490 DQ891218 DQ894401	9939	-	AY823399 AF212045 TSC_hg19_v1_chr1_-_205719151	9992	-	TSC_hg19_v1_chr1_-_205719181 AK025133 AK225228 AJ012584	10042	-	AK313479|SLC45A3|85414|solute carrier family 45, member 3##AK290364|SLC45A3|85414|solute carrier family 45, member 3##NM_033102|SLC45A3|85414|solute carrier family 45, member 3##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##CR457339|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##DQ891218|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##DQ894401|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AY823399|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AK025133|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AK225228|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AJ012584|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1	0.997825	0.021596	
chr20	34301589	34301727	reg1008358.p1	5.450	+	NM_080748 TSC_hg19_v1_chr20_+_34287326 AK000548 AM397245 BC105281 GU727625 AM397244 BC008488 AM397246	-14329	+	TSC_hg19_v1_chr20_-_34287275 AK056242 CU688074 BC018471 BC065560 AK001470 AK301969 AK001265 AK223239 AF097025 AK295215 AK297969 AK302023 AK312293 NM_001198989 NM_021100	-14417	-	TSC_hg19_v1_chr20_-_34252864 NM_001198838 NM_001198840 NM_001198863 NM_006047 NM_152838 NM_152925 NM_152926 NM_152927 NM_152928	-48782	-	L10911 BC107886 TSC_hg19_v1_chr20_-_34329965 L10910 BC131543	28289	-	BC008204 U92990 BC141835 BC158172 TSC_hg19_v1_chr20_-_34330144 AK303910 AK297060 AL833168 AK299165 CR749443 AK299678 BX640714 BX640812	28476	-	BX537770 TSC_hg19_v1_chr20_-_34330177	28519	-	NM_080748|ROMO1|140823|reactive oxygen species modulator 1##AK000548|ROMO1|140823|reactive oxygen species modulator 1##AM397245|ROMO1|140823|reactive oxygen species modulator 1##BC105281|ROMO1|140823|reactive oxygen species modulator 1##GU727625|ROMO1|140823|reactive oxygen species modulator 1##AM397244|ROMO1|140823|reactive oxygen species modulator 1##BC008488|ROMO1|140823|reactive oxygen species modulator 1##AM397246|ROMO1|140823|reactive oxygen species modulator 1##AK056242|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##BC018471|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##BC065560|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK001470|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK301969|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK001265|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK223239|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AF097025|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK295215|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK297969|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK302023|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##AK312293|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##NM_001198989|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##NM_021100|NFS1|9054|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)##NM_001198838|RBM12|10137|RNA binding motif protein 12##NM_001198840|RBM12|10137|RNA binding motif protein 12##NM_001198863|CPNE1|8904|copine I##NM_006047|RBM12|10137|RNA binding motif protein 12##NM_152838|RBM12|10137|RNA binding motif protein 12##NM_152925|CPNE1|8904|copine I##NM_152926|CPNE1|8904|copine I##NM_152927|CPNE1|8904|copine I##NM_152928|CPNE1|8904|copine I##L10911|RBM39|9584|RNA binding motif protein 39##BC107886|RBM39|9584|RNA binding motif protein 39##L10910|RBM39|9584|RNA binding motif protein 39##BC131543|RBM39|9584|RNA binding motif protein 39##BC008204|RBM39|9584|RNA binding motif protein 39##U92990|RBM39|9584|RNA binding motif protein 39##BC141835|RBM39|9584|RNA binding motif protein 39##BC158172|RBM39|9584|RNA binding motif protein 39##AK303910|RBM39|9584|RNA binding motif protein 39##AL833168|RBM39|9584|RNA binding motif protein 39##AK299165|RBM39|9584|RNA binding motif protein 39##CR749443|RBM39|9584|RNA binding motif protein 39##AK299678|RBM39|9584|RNA binding motif protein 39##BX640714|RBM39|9584|RNA binding motif protein 39##BX640812|RBM39|9584|RNA binding motif protein 39##BX537770|RBM39|9584|RNA binding motif protein 39	1.987174	0.0	denovo_WM_7:-45:0.656	denovo_WM_7:-46:0.329	denovo_WM_7:-60:0.331	denovo_WM_7:-61:0.659
chr1	150997205	150997300	reg1007636.p2	5.449	+	TSC_hg19_v1_chr1_+_150980936 AK315120 AF051907 AF123538 BC014886 BC025304 NM_021222 AF123539 AK294154 BC063481 DQ892819 DQ896065 AB528544	-16251	+	BC075812 AK301946 NM_001163258 NM_018379	-16406	-	BC032321 AK303962 AK125493 AK002142 NM_001163259 NM_001163260 TSC_hg19_v1_chr1_-_150979325 BC014447 NM_001040217	-18121	-	NM_001159642 NM_138278 AY033000 BC027868 AK092595 AX747620 AF193056	11807	+	TSC_hg19_v1_chr1_+_151020221 AK301712 AY358436 AK315680 AK000526 BC002469 NM_017860	22995	+	TSC_hg19_v1_chr1_-_151032050 AF187845 AF286592	34791	-	AK315120|PRUNE|58497|prune homolog (Drosophila)##AF051907|PRUNE|58497|prune homolog (Drosophila)##AF123538|PRUNE|58497|prune homolog (Drosophila)##BC014886|PRUNE|58497|prune homolog (Drosophila)##BC025304|PRUNE|58497|prune homolog (Drosophila)##NM_021222|PRUNE|58497|prune homolog (Drosophila)##AF123539|PRUNE|58497|prune homolog (Drosophila)##AK294154|PRUNE|58497|prune homolog (Drosophila)##BC063481|PRUNE|58497|prune homolog (Drosophila)##DQ892819|PRUNE|58497|prune homolog (Drosophila)##DQ896065|PRUNE|58497|prune homolog (Drosophila)##BC075812|FAM63A|55793|family with sequence similarity 63, member A##AK301946|FAM63A|55793|family with sequence similarity 63, member A##NM_001163258|FAM63A|55793|family with sequence similarity 63, member A##NM_018379|FAM63A|55793|family with sequence similarity 63, member A##BC032321|FAM63A|55793|family with sequence similarity 63, member A##AK303962|FAM63A|55793|family with sequence similarity 63, member A##AK125493|FAM63A|55793|family with sequence similarity 63, member A##AK002142|FAM63A|55793|family with sequence similarity 63, member A##NM_001163259|FAM63A|55793|family with sequence similarity 63, member A##NM_001163260|FAM63A|55793|family with sequence similarity 63, member A##BC014447|FAM63A|55793|family with sequence similarity 63, member A##NM_001040217|FAM63A|55793|family with sequence similarity 63, member A##NM_001159642|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##NM_138278|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AY033000|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##BC027868|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AK092595|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AF193056|BNIPL|149428|BCL2/adenovirus E1B 19kD interacting protein like##AY358436|C1orf56|54964|chromosome 1 open reading frame 56##AK315680|C1orf56|54964|chromosome 1 open reading frame 56##AK000526|C1orf56|54964|chromosome 1 open reading frame 56##BC002469|C1orf56|54964|chromosome 1 open reading frame 56##NM_017860|C1orf56|54964|chromosome 1 open reading frame 56##AF187845|CDC42SE1|56882|CDC42 small effector 1##AF286592|CDC42SE1|56882|CDC42 small effector 1	0.0	0.898751	CTCF.p2:-27:0.899
chr16	51269651	51269796	reg1010181.p2	5.448	+	BC113881 BC113906 BC131548 Y18265 TSC_hg19_v1_chr16_-_51185251 AK295103 NM_002968	-84311	-	AK307835 NM_001127892	-85216	-	TSC_hg19_v1_chr16_+_50776066 AF161542 NM_001042412 BC012342	-493665	+	NM_001242473	838123	-	NM_001080430	1311082	-	AK299202 NM_001146188	1311990	-	BC113881|SALL1|6299|sal-like 1 (Drosophila)##BC113906|SALL1|6299|sal-like 1 (Drosophila)##BC131548|SALL1|6299|sal-like 1 (Drosophila)##Y18265|SALL1|6299|sal-like 1 (Drosophila)##AK295103|SALL1|6299|sal-like 1 (Drosophila)##NM_002968|SALL1|6299|sal-like 1 (Drosophila)##AK307835|SALL1|6299|sal-like 1 (Drosophila)##NM_001127892|SALL1|6299|sal-like 1 (Drosophila)##AF161542|CYLD|1540|cylindromatosis (turban tumor syndrome)##NM_001042412|CYLD|1540|cylindromatosis (turban tumor syndrome)##BC012342|CYLD|1540|cylindromatosis (turban tumor syndrome)##NM_001242473|LOC388276|388276|hCG2045437##NM_001080430|TOX3|27324|TOX high mobility group box family member 3##AK299202|TOX3|27324|TOX high mobility group box family member 3##NM_001146188|TOX3|27324|TOX high mobility group box family member 3	1.989927	0.0	denovo_WM_7:50:0.716	denovo_WM_7:51:0.253	denovo_WM_7:65:0.668	denovo_WM_7:66:0.297
chr8	82130710	82130871	reg1009297.p1	5.448	+	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	-106476	-	AK131274 NM_001033723	-343775	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-732306	+	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	61983	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	228879	-	AB528797 NM_001080526	242967	-	AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2##NM_001080526|FABP9|646480|fatty acid binding protein 9, testis	1.603958	0.0	denovo_WM_7:-29:0.207	denovo_WM_7:37:0.238	denovo_WM_7:52:0.237
chr10	74856134	74856265	reg1000514.p5	5.447	+	AK311349 TSC_hg19_v1_chr10_-_74714574	-141627	-	AF349540 BC093996 BC111946 BC143532 AY358032 NM_032562 AF339053 AK313712 TSC_hg19_v1_chr10_-_74714543	-141688	-	AK096435 NM_152635 BC126440 AY358339 AY013707 TSC_hg19_v1_chr10_+_74653529	-202766	+	TSC_hg19_v1_chr10_-_74856621 M24486 M24487 AK312593 AK222960 BC034998	406	-	TSC_hg19_v1_chr10_-_74856725 NM_000917 NM_001017962 NM_001142595 NM_001142596	571	-	NM_015901 BC031224 AK303235 TSC_hg19_v1_chr10_+_74870272 AK300980 AK309755 AK316538 BC046173 BC038833	14052	+	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB##AF349540|PLA2G12B|84647|phospholipase A2, group XIIB##BC093996|PLA2G12B|84647|phospholipase A2, group XIIB##BC111946|PLA2G12B|84647|phospholipase A2, group XIIB##BC143532|PLA2G12B|84647|phospholipase A2, group XIIB##AY358032|PLA2G12B|84647|phospholipase A2, group XIIB##NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB##AF339053|PLA2G12B|84647|phospholipase A2, group XIIB##AK313712|PLA2G12B|84647|phospholipase A2, group XIIB##AK096435|OIT3|170392|oncoprotein induced transcript 3##NM_152635|OIT3|170392|oncoprotein induced transcript 3##BC126440|OIT3|170392|oncoprotein induced transcript 3##AY358339|OIT3|170392|oncoprotein induced transcript 3##AY013707|OIT3|170392|oncoprotein induced transcript 3##M24486|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##M24487|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK312593|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK222960|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##BC034998|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_000917|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001017962|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142595|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142596|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_015901|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC031224|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK303235|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK300980|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK309755|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK316538|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC046173|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC038833|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13	0.972653	0.0	denovo_WM_7:-13:0.418	denovo_WM_7:-14:0.372
chr15	66116573	66116717	reg1008826.p1	5.447	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-32052	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-32172	-	AF062922 NM_004727	-202376	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	45202	+	TSC_hg19_v1_chr15_-_66321664 AK054827	205048	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	429432	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	0.020056	0.0	
chr2	236655071	236655206	reg1004405.p2	5.447	+	TSC_hg19_v1_chr2_+_236403297 AB384114 AF413078	-251828	+	TSC_hg19_v1_chr2_+_236402950 BC140856	-252161	+	TSC_hg19_v1_chr2_+_236402701 NM_001037131 NM_001244888 NM_014914 BC060814 BC167157 AB029022 BC167153 AY033765	-252335	+	AK311262 TSC_hg19_v1_chr2_-_237076045	420876	-	AB463673 AF118452 BC114458 BC137448 BC137449 BC141861 BC144646 NM_001485	421494	-	NM_212556 BX647589	517856	-	AF413078|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC140856|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001037131|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001244888|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_014914|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC060814|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167157|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AB029022|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167153|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AY033765|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AF118452|GBX2|2637|gastrulation brain homeobox 2##BC137448|GBX2|2637|gastrulation brain homeobox 2##BC137449|GBX2|2637|gastrulation brain homeobox 2##NM_001485|GBX2|2637|gastrulation brain homeobox 2##NM_212556|ASB18|401036|ankyrin repeat and SOCS box containing 18##BX647589|ASB18|401036|ankyrin repeat and SOCS box containing 18	1.378741	0.056962	
chr10	67658835	67658991	reg1008175.p1	5.446	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-2377672	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-2377751	+	TSC_hg19_v1_chr10_+_65281112 BC068557 NM_001001330	-2377798	+	NM_178011 BX640611 AY358315 BC111492	1026902	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	1766483	-	AF091606 AK313882 NM_013266	1797024	-	BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##BC068557|REEP3|221035|receptor accessory protein 3##NM_001001330|REEP3|221035|receptor accessory protein 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	1.187129	0.0	denovo_WM_7:-28:0.216	denovo_WM_7:-48:0.609
chr14	89796230	89796361	reg1010098.p1	5.446	+	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-505302	+	BC150639 NM_183387 BC032685 TSC_hg19_v1_chr14_-_89259288	-537085	-	NM_207662 BC027607 AF474376	-735542	+	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	82481	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	87115	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	289300	-	AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##BC150639|EML5|161436|echinoderm microtubule associated protein like 5##NM_183387|EML5|161436|echinoderm microtubule associated protein like 5##BC032685|EML5|161436|echinoderm microtubule associated protein like 5##NM_207662|ZC3H14|79882|zinc finger CCCH-type containing 14##BC027607|ZC3H14|79882|zinc finger CCCH-type containing 14##AF474376|ZC3H14|79882|zinc finger CCCH-type containing 14##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3	1.990073	0.0	denovo_WM_7:-70:0.432	denovo_WM_7:-71:0.288	denovo_WM_7:-86:0.320	denovo_WM_7:-87:0.464
chr5	158533454	158533608	reg1006632.p1	5.446	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	-6789	-	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-7074	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1247441	-	AK304228 NM_001199382	101117	-	AK056513 NM_144726	101302	-	AK311433 AK304435 NM_001199381	101578	-	BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145##AK311433|RNF145|153830|ring finger protein 145##AK304435|RNF145|153830|ring finger protein 145##NM_001199381|RNF145|153830|ring finger protein 145	0.993836	0.0	denovo_WM_7:-9:0.248	denovo_WM_7:-10:0.248	denovo_WM_7:-11:0.248	denovo_WM_7:-12:0.248
chr7	134317813	134317950	reg1008998.p1	5.446	+	NM_001080538	-84033	+	AF524864 NM_020299 BC008837	-105511	+	TSC_hg19_v1_chr7_-_134143878 AK313439 BC000260 NM_001628 AK311339	-173917	-	NM_001724 NM_199186 TSC_hg19_v1_chr7_+_134331586 BC017050 AK315439 AK097778 X04327	13704	+	TSC_hg19_v1_chr7_+_134464170 NM_004342 NM_033138 NM_033157 AK289686	146285	+	TSC_hg19_v1_chr7_+_134464387 AK298524 AK304729 AF247820 M83216	146508	+	NM_001080538|AKR1B15|441282|aldo-keto reductase family 1, member B15##AF524864|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##NM_020299|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##BC008837|AKR1B10|57016|aldo-keto reductase family 1, member B10 (aldose reductase)##AK313439|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##BC000260|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##NM_001628|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##AK311339|AKR1B1|231|aldo-keto reductase family 1, member B1 (aldose reductase)##NM_001724|BPGM|669|2,3-bisphosphoglycerate mutase##NM_199186|BPGM|669|2,3-bisphosphoglycerate mutase##BC017050|BPGM|669|2,3-bisphosphoglycerate mutase##AK315439|BPGM|669|2,3-bisphosphoglycerate mutase##AK097778|BPGM|669|2,3-bisphosphoglycerate mutase##X04327|BPGM|669|2,3-bisphosphoglycerate mutase##NM_004342|CALD1|800|caldesmon 1##NM_033138|CALD1|800|caldesmon 1##NM_033157|CALD1|800|caldesmon 1##AK289686|CALD1|800|caldesmon 1##AK298524|CALD1|800|caldesmon 1##AK304729|CALD1|800|caldesmon 1##AF247820|CALD1|800|caldesmon 1##M83216|CALD1|800|caldesmon 1	0.0	0.30728	CTCF.p2:12:0.307
chr10	97595401	97595562	reg1010672.p1	5.445	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-79941	+	AJ133133 AJ133134 NM_001098175	-123946	+	BC068449 DQ278872 NM_001143973 NM_015631	-141582	-	AK294399 NM_001130446	72240	+	NM_001001732 NM_001159747 AK302377 BC075861	164383	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	207900	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.0	0.0	
chr18	3526906	3527086	reg1005243.p1	5.445	+	NM_173211	-73225	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-75365	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-76916	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	67146	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	318334	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	347288	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.073239	0.0	
chr19	19977222	19977341	reg1008157.p1	5.445	+	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	-597	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	-44729	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	-90076	-	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	34503	+	AK098164 NM_001077349	172757	-	AK027845 TSC_hg19_v1_chr19_-_20150315 AK096571 NM_033196	173016	-	BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440##NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93##AK098164|ZNF682|91120|zinc finger protein 682##NM_001077349|ZNF682|91120|zinc finger protein 682##AK027845|ZNF682|91120|zinc finger protein 682##AK096571|ZNF682|91120|zinc finger protein 682##NM_033196|ZNF682|91120|zinc finger protein 682	0.998539	0.0	denovo_WM_7:35:0.801
chr21	21398912	21399052	reg1010147.p2	5.445	+	BC111749 NM_002772 U09860	-1623017	-	AK296009 NM_001204174	-1780791	+	TSC_hg19_v1_chr21_+_19617149 AF257472 NM_024944 AY358608 BC009418	-1781820	+	TSC_hg19_v1_chr21_+_22370656 BC052946 NM_004540	971660	+	TSC_hg19_v1_chr21_+_22370694 AK299054	971708	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	971791	+	BC111749|TMPRSS15|5651|transmembrane protease, serine 15##NM_002772|TMPRSS15|5651|transmembrane protease, serine 15##U09860|TMPRSS15|5651|transmembrane protease, serine 15##AK296009|CHODL|140578|chondrolectin##NM_001204174|CHODL|140578|chondrolectin##AF257472|CHODL|140578|chondrolectin##NM_024944|CHODL|140578|chondrolectin##AY358608|CHODL|140578|chondrolectin##BC009418|CHODL|140578|chondrolectin##BC052946|NCAM2|4685|neural cell adhesion molecule 2##NM_004540|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2	0.999303	0.0	denovo_WM_7:13:0.949
chr10	23054667	23054771	reg1007115.p1	5.444	+	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	-51229	-	AK294817 TSC_hg19_v1_chr10_-_23003038	-51682	-	TSC_hg19_v1_chr10_+_22726003 AK295718	-328720	+	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	162262	+	BC117471 BC130380 NM_012228 BC018030 TSC_hg19_v1_chr10_+_23384507 AF151889 BC066305 AF122004 EU446941	329764	+	AB463998 NM_178161	426739	+	BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3##BC117471|MSRB2|22921|methionine sulfoxide reductase B2##BC130380|MSRB2|22921|methionine sulfoxide reductase B2##NM_012228|MSRB2|22921|methionine sulfoxide reductase B2##BC018030|MSRB2|22921|methionine sulfoxide reductase B2##AF151889|MSRB2|22921|methionine sulfoxide reductase B2##BC066305|MSRB2|22921|methionine sulfoxide reductase B2##AF122004|MSRB2|22921|methionine sulfoxide reductase B2##EU446941|MSRB2|22921|methionine sulfoxide reductase B2##NM_178161|PTF1A|256297|pancreas specific transcription factor, 1a	1.80454	0.0	denovo_WM_7:-19:0.471	denovo_WM_7:-21:0.234	denovo_WM_7:-36:0.255	denovo_WM_7:-37:0.332
chr2	228276371	228276487	reg1005997.p2	5.444	+	AY358671 BC137256 BC137257 BC035754 TSC_hg19_v1_chr2_-_228244023 AK026453 NM_024795	-32415	-	AF246239 NM_020194	-84202	+	TSC_hg19_v1_chr2_+_228189983 AK026137 BC093024 AF258660	-86385	+	TSC_hg19_v1_chr2_+_228336861 AK097451	60413	+	TSC_hg19_v1_chr2_+_228336877 NM_001135187 NM_001135188 NM_001135189 NM_004504 BC030592 X89478 BC096272 BC096273 BC096274 BC096275 AB527534 CU688928	60577	+	TSC_hg19_v1_chr2_+_228356287 AK295030	79862	+	AY358671|TM4SF20|79853|transmembrane 4 L six family member 20##BC137256|TM4SF20|79853|transmembrane 4 L six family member 20##BC137257|TM4SF20|79853|transmembrane 4 L six family member 20##BC035754|TM4SF20|79853|transmembrane 4 L six family member 20##AK026453|TM4SF20|79853|transmembrane 4 L six family member 20##NM_024795|TM4SF20|79853|transmembrane 4 L six family member 20##AF246239|MFF|56947|mitochondrial fission factor##NM_020194|MFF|56947|mitochondrial fission factor##AK026137|MFF|56947|mitochondrial fission factor##BC093024|MFF|56947|mitochondrial fission factor##AF258660|MFF|56947|mitochondrial fission factor##AK097451|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135187|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135188|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135189|AGFG1|3267|ArfGAP with FG repeats 1##NM_004504|AGFG1|3267|ArfGAP with FG repeats 1##BC030592|AGFG1|3267|ArfGAP with FG repeats 1##X89478|AGFG1|3267|ArfGAP with FG repeats 1##BC096272|AGFG1|3267|ArfGAP with FG repeats 1##BC096273|AGFG1|3267|ArfGAP with FG repeats 1##BC096274|AGFG1|3267|ArfGAP with FG repeats 1##BC096275|AGFG1|3267|ArfGAP with FG repeats 1##AK295030|AGFG1|3267|ArfGAP with FG repeats 1	1.052448	0.0	denovo_WM_7:-15:0.649
chr3	49709286	49709466	reg1006795.p1	5.444	+	TSC_hg19_v1_chr3_+_49591913 AF052224 NM_003458	-117460	+	AK297802 TSC_hg19_v1_chr3_+_49568448	-140967	+	TSC_hg19_v1_chr3_+_49547870 DQ893491 DQ896435	-161459	+	BC000362 BC001499 BC001826 NM_001640	2058	+	TSC_hg19_v1_chr3_+_49711791 AK314962	2399	+	D38441 TSC_hg19_v1_chr3_+_49711819 AF141383 J03068 S90797	2508	+	AF052224|BSN|8927|bassoon (presynaptic cytomatrix protein)##NM_003458|BSN|8927|bassoon (presynaptic cytomatrix protein)##AK297802|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ893491|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ896435|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC000362|APEH|327|N-acylaminoacyl-peptide hydrolase##BC001499|APEH|327|N-acylaminoacyl-peptide hydrolase##BC001826|APEH|327|N-acylaminoacyl-peptide hydrolase##NM_001640|APEH|327|N-acylaminoacyl-peptide hydrolase##AK314962|APEH|327|N-acylaminoacyl-peptide hydrolase##D38441|APEH|327|N-acylaminoacyl-peptide hydrolase##AF141383|APEH|327|N-acylaminoacyl-peptide hydrolase	0.999319	0.549855	CTCF.p2:-58:0.550
chr6	137955315	137955419	reg1005343.p1	5.444	+	BC051352 AK096362 NM_175747	-139842	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-414809	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-414822	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	233170	+	TSC_hg19_v1_chr6_-_138189314 AK124173	233983	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	473201	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	0.991659	0.0	denovo_WM_7:32:0.331	denovo_WM_7:33:0.331	denovo_WM_7:34:0.331
chr7	149891076	149891170	reg1006768.p1	5.444	+	TSC_hg19_v1_chr7_+_149571066 BX640846 AK290086 AK094602 AK098362 AK172725 DQ995344 AY037164	-320042	+	BC023225 TSC_hg19_v1_chr7_-_149570892 BC028735	-320228	-	TSC_hg19_v1_chr7_+_149570049 AF452639 AK057700 NM_001100592 NM_145230	-321081	+	AB039791 NM_001164459	108945	-	TSC_hg19_v1_chr7_+_150020443 NM_001142928 NM_023942 AK055954	129281	+	TSC_hg19_v1_chr7_+_150020552 BC001354	129453	+	BX640846|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK290086|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK094602|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK098362|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK172725|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##DQ995344|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AY037164|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##BC023225|LOC401431|401431|uncharacterized LOC401431##BC028735|LOC401431|401431|uncharacterized LOC401431##AF452639|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK057700|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##NM_001100592|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##NM_145230|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AB039791|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164459|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001142928|LRRC61|65999|leucine rich repeat containing 61##NM_023942|LRRC61|65999|leucine rich repeat containing 61##AK055954|LRRC61|65999|leucine rich repeat containing 61##BC001354|LRRC61|65999|leucine rich repeat containing 61	0.0	0.0	
chr15	57210778	57210958	reg1009402.p2	5.443	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	0	+	TSC_hg19_v1_chr15_+_57210823 NM_003205 NM_207036 NM_207037 NM_207038	-41	+	TSC_hg19_v1_chr15_-_57210733 AK096657 BC036541	-132	-	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	34	+	TSC_hg19_v1_chr15_+_57210977 M83233	132	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	300799	+	AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12##NM_003205|TCF12|6938|transcription factor 12##NM_207036|TCF12|6938|transcription factor 12##NM_207037|TCF12|6938|transcription factor 12##NM_207038|TCF12|6938|transcription factor 12##AK096657|LOC145783|145783|uncharacterized LOC145783##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##M83233|TCF12|6938|transcription factor 12##AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12	0.0	0.0	
chr17	76747530	76747641	reg1008065.p1	5.443	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-14587	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-27834	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-27938	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	30768	-	BC071582 TSC_hg19_v1_chr17_-_76836610	89065	-	TSC_hg19_v1_chr17_-_76836843 AK225426	89198	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	0.984077	0.0	denovo_WM_7:-22:0.709
chr6	157089133	157089293	reg1009558.p2	5.443	+	AF190122 NM_015718	-1312177	-	TSC_hg19_v1_chr6_-_155635619 BC005183 BC017788 NM_016020 AF151833 BC054007 AK289484	-1453590	-	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	-1453628	-	TSC_hg19_v1_chr6_+_157099052 NM_017519 NM_020732 Y08266	9850	+	TSC_hg19_v1_chr6_+_157099206 AB587572	10012	+	TSC_hg19_v1_chr6_+_157099283 AF521671	10071	+	AF190122|NOX3|50508|NADPH oxidase 3##NM_015718|NOX3|50508|NADPH oxidase 3##BC005183|TFB1M|51106|transcription factor B1, mitochondrial##BC017788|TFB1M|51106|transcription factor B1, mitochondrial##NM_016020|TFB1M|51106|transcription factor B1, mitochondrial##AF151833|TFB1M|51106|transcription factor B1, mitochondrial##BC054007|TFB1M|51106|transcription factor B1, mitochondrial##AK289484|TFB1M|51106|transcription factor B1, mitochondrial##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial##NM_017519|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##NM_020732|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##Y08266|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)	0.0	0.0	
chr9	97637620	97637787	reg1008837.p2	5.443	+	NM_001193329 AJ560639	-115706	+	BC029616 TSC_hg19_v1_chr9_+_97488999	-148700	+	TSC_hg19_v1_chr9_+_97488980 NM_001193331 NM_032823 AK296782 AK057450	-148741	+	AK298959 TSC_hg19_v1_chr9_+_97766501 AK300486	128772	+	X66894 NM_001243743	441817	-	AK312548 AK222871 TSC_hg19_v1_chr9_-_98079974 BC015748 X66893 AK304887 NM_000136 NM_001243744	442228	-	NM_001193329|C9orf3|84909|chromosome 9 open reading frame 3##AJ560639|C9orf3|84909|chromosome 9 open reading frame 3##BC029616|C9orf3|84909|chromosome 9 open reading frame 3##NM_001193331|C9orf3|84909|chromosome 9 open reading frame 3##NM_032823|C9orf3|84909|chromosome 9 open reading frame 3##AK296782|C9orf3|84909|chromosome 9 open reading frame 3##AK057450|C9orf3|84909|chromosome 9 open reading frame 3##AK298959|C9orf3|84909|chromosome 9 open reading frame 3##AK300486|C9orf3|84909|chromosome 9 open reading frame 3##X66894|FANCC|2176|Fanconi anemia, complementation group C##NM_001243743|FANCC|2176|Fanconi anemia, complementation group C##AK312548|FANCC|2176|Fanconi anemia, complementation group C##AK222871|FANCC|2176|Fanconi anemia, complementation group C##BC015748|FANCC|2176|Fanconi anemia, complementation group C##X66893|FANCC|2176|Fanconi anemia, complementation group C##AK304887|FANCC|2176|Fanconi anemia, complementation group C##NM_000136|FANCC|2176|Fanconi anemia, complementation group C##NM_001243744|FANCC|2176|Fanconi anemia, complementation group C	1.873057	0.0	denovo_WM_7:-54:0.936	denovo_WM_7:-69:0.937
chr12	110895190	110895322	reg1000648.p3	5.442	+	TSC_hg19_v1_chr12_-_110888163 AK311789	-7087	-	TSC_hg19_v1_chr12_-_110888152 NM_005719	-7102	-	TSC_hg19_v1_chr12_-_110888134 AK297309	-7114	-	AM992619 AM992620 AY364262 CU678955 CU689082 AB528074 AM393009 AM393821 TSC_hg19_v1_chr12_-_110906038 AF117229	10774	-	TSC_hg19_v1_chr12_-_110906063 AK223209 AK314946 BC008416 BC031024 AY359078 BX537973 NM_001164373 NM_016301	10816	-	TSC_hg19_v1_chr12_+_110906228 AK296280 AK297684 NM_013300 AK225731 U79274 BC020967	11053	+	AK311789|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##NM_005719|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AK297309|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AM992619|GPN3|51184|GPN-loop GTPase 3##AM992620|GPN3|51184|GPN-loop GTPase 3##AY364262|GPN3|51184|GPN-loop GTPase 3##AM393009|GPN3|51184|GPN-loop GTPase 3##AM393821|GPN3|51184|GPN-loop GTPase 3##AF117229|GPN3|51184|GPN-loop GTPase 3##AK223209|GPN3|51184|GPN-loop GTPase 3##AK314946|GPN3|51184|GPN-loop GTPase 3##BC008416|GPN3|51184|GPN-loop GTPase 3##BC031024|GPN3|51184|GPN-loop GTPase 3##AY359078|GPN3|51184|GPN-loop GTPase 3##BX537973|GPN3|51184|GPN-loop GTPase 3##NM_001164373|GPN3|51184|GPN-loop GTPase 3##NM_016301|GPN3|51184|GPN-loop GTPase 3##AK296280|C12orf24|29902|chromosome 12 open reading frame 24##AK297684|C12orf24|29902|chromosome 12 open reading frame 24##NM_013300|C12orf24|29902|chromosome 12 open reading frame 24##AK225731|C12orf24|29902|chromosome 12 open reading frame 24##U79274|C12orf24|29902|chromosome 12 open reading frame 24##BC020967|C12orf24|29902|chromosome 12 open reading frame 24	1.850377	0.0	denovo_WM_7:12:0.862	denovo_WM_7:27:0.857
chr2	46096126	46096237	reg1010086.p3	5.442	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-217107	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-257774	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-301053	-	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	428410	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	428794	+	NM_001145051	610522	+	AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375	1.863262	0.0	denovo_WM_7:-60:0.870	denovo_WM_7:-76:0.455	denovo_WM_7:-77:0.455
chr12	93381860	93381979	reg1002276.p2	5.441	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-58821	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-58876	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	-58981	-	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	389973	+	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	453767	-	TSC_hg19_v1_chr12_-_93835718 D83004	453799	-	NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.0	0.0	
chr4	123573677	123573765	reg1008598.p1	5.441	+	CU688120 CU688122 DQ645417 BC069124 BC066258 BC066259 BC066260 BC066261 BC066262 NM_001207006 NM_021803 AF254069	-31533	-	AF532913 AY283686 AY523040 DQ231169 S77835 AB451325 AB451454 AB591003 CU688118 DQ861285 AF228636 BC066254 BC066255 BC066256 BC066257 BC070338 S77834 U25676 V00564 NM_000586 X01586	-196135	-	NM_001159285 NM_001159295 BC040229 AK093297 AX748040	-273089	+	AK123553 NM_001178007 NM_152618 BC055426 TSC_hg19_v1_chr4_+_123653916 BX538148	80184	+	TSC_hg19_v1_chr4_+_123747833 J04513 NM_002006 BC111737 BC118573 BC118654	174123	+	TSC_hg19_v1_chr4_+_123747985 M27968	174245	+	DQ645417|IL21|59067|interleukin 21##BC069124|IL21|59067|interleukin 21##BC066258|IL21|59067|interleukin 21##BC066259|IL21|59067|interleukin 21##BC066260|IL21|59067|interleukin 21##BC066261|IL21|59067|interleukin 21##BC066262|IL21|59067|interleukin 21##NM_001207006|IL21|59067|interleukin 21##NM_021803|IL21|59067|interleukin 21##AF254069|IL21|59067|interleukin 21##AF532913|IL2|3558|interleukin 2##AY283686|IL2|3558|interleukin 2##AY523040|IL2|3558|interleukin 2##DQ231169|IL2|3558|interleukin 2##S77835|IL2|3558|interleukin 2##AB451325|IL2|3558|interleukin 2##AB451454|IL2|3558|interleukin 2##DQ861285|IL2|3558|interleukin 2##AF228636|IL2|3558|interleukin 2##BC066254|IL2|3558|interleukin 2##BC066255|IL2|3558|interleukin 2##BC066256|IL2|3558|interleukin 2##BC066257|IL2|3558|interleukin 2##BC070338|IL2|3558|interleukin 2##S77834|IL2|3558|interleukin 2##U25676|IL2|3558|interleukin 2##V00564|IL2|3558|interleukin 2##NM_000586|IL2|3558|interleukin 2##X01586|IL2|3558|interleukin 2##NM_001159285|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##NM_001159295|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##BC040229|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK093297|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK123553|BBS12|166379|Bardet-Biedl syndrome 12##NM_001178007|BBS12|166379|Bardet-Biedl syndrome 12##NM_152618|BBS12|166379|Bardet-Biedl syndrome 12##BC055426|BBS12|166379|Bardet-Biedl syndrome 12##BX538148|BBS12|166379|Bardet-Biedl syndrome 12##J04513|FGF2|2247|fibroblast growth factor 2 (basic)##NM_002006|FGF2|2247|fibroblast growth factor 2 (basic)##BC111737|FGF2|2247|fibroblast growth factor 2 (basic)##M27968|FGF2|2247|fibroblast growth factor 2 (basic)	2.06673	0.894833	CTCF.p2:10:0.895	denovo_WM_7:99:0.439	denovo_WM_7:100:0.250	denovo_WM_7:101:0.261
chr5	77175783	77175963	reg1002872.p3	5.441	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-103741	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-241359	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-241444	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	414552	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	414604	-	TSC_hg19_v1_chr5_-_77590495 U81504	414619	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	1.963045	0.0	denovo_WM_7:-70:0.946	denovo_WM_7:-88:0.981
chr7	48086136	48086251	reg1006778.p1	5.441	+	BC045737 BC031107 NM_001100159	-11082	+	AK302011 BC026189 AF429967 NM_001030019 NM_152782	-17514	-	TSC_hg19_v1_chr7_-_48019247 NM_004507	-66964	-	TSC_hg19_v1_chr7_+_48128282 BC007348 NM_181597	42096	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	42607	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	42762	+	BC045737|C7orf57|136288|chromosome 7 open reading frame 57##BC031107|C7orf57|136288|chromosome 7 open reading frame 57##NM_001100159|C7orf57|136288|chromosome 7 open reading frame 57##AK302011|SUN3|256979|Sad1 and UNC84 domain containing 3##BC026189|SUN3|256979|Sad1 and UNC84 domain containing 3##AF429967|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_001030019|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_152782|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_004507|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007348|UPP1|7378|uridine phosphorylase 1##NM_181597|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1	0.031859	0.013475	
chr7	5610417	5610527	reg1006335.p2	5.441	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-40263	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-41226	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-41631	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	21966	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	22038	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	210750	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.99645	0.0	
chr19	38413776	38413885	reg1006391.p1	5.440	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-15918	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-15973	+	AK302913 AY026504 AK128826 NM_031951	-16556	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	301005	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	306486	-	TSC_hg19_v1_chr19_-_38720336 AK297581	306504	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.98734	0.0	denovo_WM_7:-46:0.818
chr2	43467407	43467521	reg1009351.p1	5.440	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-13722	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-13734	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-14119	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	355684	-	TSC_hg19_v1_chr2_+_43864411 BC063310	396949	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	396975	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	0.107434	0.0	
chr11	116949038	116949181	reg1007600.p2	5.439	+	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-240754	-	TSC_hg19_v1_chr11_+_116700622 BC121081 BC134419 NM_000040 BC027977	-248485	+	HQ258218 HQ258399 BC113594 BC113596 BC074764 X13629 M13654 NM_000482 TSC_hg19_v1_chr11_-_116694025	-255143	-	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	19924	-	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	65924	+	TSC_hg19_v1_chr11_+_117049458 AK292501	100448	+	X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##BC121081|APOC3|345|apolipoprotein C-III##BC134419|APOC3|345|apolipoprotein C-III##NM_000040|APOC3|345|apolipoprotein C-III##BC027977|APOC3|345|apolipoprotein C-III##HQ258218|APOA4|337|apolipoprotein A-IV##HQ258399|APOA4|337|apolipoprotein A-IV##BC113594|APOA4|337|apolipoprotein A-IV##BC113596|APOA4|337|apolipoprotein A-IV##BC074764|APOA4|337|apolipoprotein A-IV##X13629|APOA4|337|apolipoprotein A-IV##M13654|APOA4|337|apolipoprotein A-IV##NM_000482|APOA4|337|apolipoprotein A-IV##BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292501|SIDT2|51092|SID1 transmembrane family, member 2	0.998462	0.0	
chr7	120498408	120498533	reg1005831.p2	5.439	+	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	-310	-	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	-450	-	AK307139 AB028967 NM_012281	-584766	+	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	92411	+	TSC_hg19_v1_chr7_+_120628742 NM_024913 AK289978 AL832619	130295	+	TSC_hg19_v1_chr7_+_120628867 AL832638	130426	+	BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3##NM_024913|C7orf58|79974|chromosome 7 open reading frame 58##AK289978|C7orf58|79974|chromosome 7 open reading frame 58##AL832619|C7orf58|79974|chromosome 7 open reading frame 58##AL832638|C7orf58|79974|chromosome 7 open reading frame 58	0.0	0.0	
chr14	73931956	73932060	reg1006122.p1	5.438	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-6717	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-6741	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-6776	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	25617	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	25655	+	TSC_hg19_v1_chr14_+_73957674 AY390535	25665	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.17082	0.0	
chr14	91822916	91823063	reg1006022.p1	5.438	+	BC098567 NM_003485	-102795	-	BC128536 NM_001177676	-112138	-	TSC_hg19_v1_chr14_+_91581017 NM_001102367 BX248060 BC010614 AY358516	-241962	+	TSC_hg19_v1_chr14_-_91884159 AF070587	61159	-	TSC_hg19_v1_chr14_-_91884165 NM_001080414	61186	-	BC072409 AB095930 TSC_hg19_v1_chr14_-_91976621	153511	-	BC098567|GPR68|8111|G protein-coupled receptor 68##NM_003485|GPR68|8111|G protein-coupled receptor 68##BC128536|GPR68|8111|G protein-coupled receptor 68##NM_001177676|GPR68|8111|G protein-coupled receptor 68##NM_001102367|C14orf159|80017|chromosome 14 open reading frame 159##BX248060|C14orf159|80017|chromosome 14 open reading frame 159##BC010614|C14orf159|80017|chromosome 14 open reading frame 159##AY358516|C14orf159|80017|chromosome 14 open reading frame 159##AF070587|CCDC88C|440193|coiled-coil domain containing 88C##NM_001080414|CCDC88C|440193|coiled-coil domain containing 88C##BC072409|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##AB095930|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	0.7684	0.0	denovo_WM_7:61:0.689
chr4	47935981	47936135	reg1009812.p1	5.438	+	TSC_hg19_v1_chr4_-_47916595 AB181916 AK302440 AK131311 NM_152995 BC051193 AB085695	-19463	-	AF133845 BC110451 NM_006587 AK297675 AK304038 AK304466 BX648285	-95968	-	TSC_hg19_v1_chr4_+_47708352 D28417	-227704	+	M84741 NM_001142564 S42457	47431	-	AK292021 NM_000087	78902	-	X64802 TSC_hg19_v1_chr4_-_48018662	82579	-	AB181916|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##AK302440|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##NM_152995|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##BC051193|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##AB085695|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##AF133845|CORIN|10699|corin, serine peptidase##BC110451|CORIN|10699|corin, serine peptidase##NM_006587|CORIN|10699|corin, serine peptidase##AK297675|CORIN|10699|corin, serine peptidase##AK304038|CORIN|10699|corin, serine peptidase##AK304466|CORIN|10699|corin, serine peptidase##BX648285|CORIN|10699|corin, serine peptidase##M84741|CNGA1|1259|cyclic nucleotide gated channel alpha 1##NM_001142564|CNGA1|1259|cyclic nucleotide gated channel alpha 1##S42457|CNGA1|1259|cyclic nucleotide gated channel alpha 1##AK292021|CNGA1|1259|cyclic nucleotide gated channel alpha 1##NM_000087|CNGA1|1259|cyclic nucleotide gated channel alpha 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1	0.0	0.125271	
chr5	66502777	66502937	reg1009149.p1	5.438	+	BC109069 BC109070 D83597 NM_005582 AK313177	-10257	-	AY830839 BC018692 NM_015183	-378254	+	TSC_hg19_v1_chr5_+_65892187 NM_001164664 NM_198828 BC033215	-610649	+	TSC_hg19_v1_chr5_+_67511583 NM_181523	1008723	+	TSC_hg19_v1_chr5_+_67511602 BC094795	1008750	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	1081437	+	BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##AY830839|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC018692|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_015183|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_001164664|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_198828|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC033215|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	0.0	0.0	
chr6	11655619	11655797	reg1002672.p1	5.438	+	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-117210	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-273168	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-422798	-	NM_001143948 NM_032744	123571	-	NM_002114	357015	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	634885	+	NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	1.995738	0.0	denovo_WM_7:58:0.221	denovo_WM_7:80:0.222
chr6	99867048	99867196	reg1009254.p1	5.438	+	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	-17831	-	AF193016 BC015634 BC001534 BC063463 CU687730 AB590714 AF351615 AK056955 AL136726 NM_017421	-25069	-	BC004869 BC011583 NM_032511	-69592	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	5692	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	6045	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	96147	-	AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF193016|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC015634|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC001534|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC063463|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AF351615|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AK056955|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AL136726|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##NM_017421|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC004869|C6orf168|84553|chromosome 6 open reading frame 168##BC011583|C6orf168|84553|chromosome 6 open reading frame 168##NM_032511|C6orf168|84553|chromosome 6 open reading frame 168##BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45	1.993494	0.0	
chr7	100230683	100230769	reg1001700.p2	5.438	+	TSC_hg19_v1_chr7_-_100230676 AK000421	-25	-	TSC_hg19_v1_chr7_+_100210156 NM_001040098 NM_001040099 NM_023948 BC011653 BC009482 BC028475 BC005042	-20654	+	NM_001040097 TSC_hg19_v1_chr7_+_100209784	-20957	+	AF085928 NM_001206855	477	-	BC150192 AF067864 BC142630 NM_003227	8428	-	TSC_hg19_v1_chr7_-_100240337 AK022002	9641	-	AK000421|TFR2|7036|transferrin receptor 2##NM_001040098|MOSPD3|64598|motile sperm domain containing 3##NM_001040099|MOSPD3|64598|motile sperm domain containing 3##NM_023948|MOSPD3|64598|motile sperm domain containing 3##BC011653|MOSPD3|64598|motile sperm domain containing 3##BC009482|MOSPD3|64598|motile sperm domain containing 3##BC028475|MOSPD3|64598|motile sperm domain containing 3##BC005042|MOSPD3|64598|motile sperm domain containing 3##NM_001040097|MOSPD3|64598|motile sperm domain containing 3##AF085928|TFR2|7036|transferrin receptor 2##NM_001206855|TFR2|7036|transferrin receptor 2##BC150192|TFR2|7036|transferrin receptor 2##AF067864|TFR2|7036|transferrin receptor 2##BC142630|TFR2|7036|transferrin receptor 2##NM_003227|TFR2|7036|transferrin receptor 2##AK022002|TFR2|7036|transferrin receptor 2	0.0	0.0	
chr12	32213564	32213728	reg1006613.p2	5.436	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	-101252	+	TSC_hg19_v1_chr12_+_32112348 NM_018169	-101315	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	-268442	-	TSC_hg19_v1_chr12_+_32259750 BC010091	46068	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	46527	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	441393	+	AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4	0.0	0.975295	CTCF.p2:52:0.975
chr17	37934257	37934437	reg1001675.p1	5.436	+	AK290115 NM_001242443	-38128	+	AK125544 NM_001242442	-39324	+	AK294620 NM_001030002 BC006535 TSC_hg19_v1_chr17_+_37894600	-39768	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	86083	-	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	90096	+	AF119884 NM_018530	139445	-	AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AK125544|GRB7|2886|growth factor receptor-bound protein 7##NM_001242442|GRB7|2886|growth factor receptor-bound protein 7##AK294620|GRB7|2886|growth factor receptor-bound protein 7##NM_001030002|GRB7|2886|growth factor receptor-bound protein 7##BC006535|GRB7|2886|growth factor receptor-bound protein 7##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B	0.0	0.0	
chr22	46080263	46080375	reg1007559.p2	5.436	+	CR456568 TSC_hg19_v1_chr22_+_46067931 AK095309 CR457381 DQ893240 DQ896570	-12402	+	AK025734 TSC_hg19_v1_chr22_+_46067746 AF119662 BC007508	-12563	+	TSC_hg19_v1_chr22_+_46067733 AF086923 AL050282	-12590	+	AF416743 NM_058238 TSC_hg19_v1_chr22_-_46373045	292710	-	TSC_hg19_v1_chr22_+_46449736 BC036832	369405	+	AB528792 AK001807 NM_018280 TSC_hg19_v1_chr22_-_46450052	369693	-	CR456568|ATXN10|25814|ataxin 10##AK095309|ATXN10|25814|ataxin 10##CR457381|ATXN10|25814|ataxin 10##DQ893240|ATXN10|25814|ataxin 10##DQ896570|ATXN10|25814|ataxin 10##AK025734|ATXN10|25814|ataxin 10##AF119662|ATXN10|25814|ataxin 10##BC007508|ATXN10|25814|ataxin 10##AF086923|ATXN10|25814|ataxin 10##AL050282|ATXN10|25814|ataxin 10##AF416743|WNT7B|7477|wingless-type MMTV integration site family, member 7B##NM_058238|WNT7B|7477|wingless-type MMTV integration site family, member 7B##AK001807|C22orf26|55267|chromosome 22 open reading frame 26##NM_018280|C22orf26|55267|chromosome 22 open reading frame 26	0.0	0.0	
chr2	88152623	88152799	reg1009836.p2	5.436	+	AK302429 NM_001078170	-27426	-	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	-105092	+	TSC_hg19_v1_chr2_+_87755060 AK312010	-397651	+	CR749330 NM_001024457	132597	-	AF208845 AF217520 NM_016618 TSC_hg19_v1_chr2_-_88355252 BC015927	202548	-	BC107580 TSC_hg19_v1_chr2_-_88355283	202575	-	AK302429|RGPD2|729857|RANBP2-like and GRIP domain containing 2##NM_001078170|RGPD2|729857|RANBP2-like and GRIP domain containing 2##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##AF208845|KRCC1|51315|lysine-rich coiled-coil 1##AF217520|KRCC1|51315|lysine-rich coiled-coil 1##NM_016618|KRCC1|51315|lysine-rich coiled-coil 1##BC015927|KRCC1|51315|lysine-rich coiled-coil 1##BC107580|KRCC1|51315|lysine-rich coiled-coil 1	0.936989	0.0	denovo_WM_7:23:0.630
chr3	50376678	50376801	reg1010099.p2	5.436	+	AF132677 BC110412 NM_170712 AK310032	-1056	-	TSC_hg19_v1_chr3_-_50374882 AK292638 AF061836 NM_170713	-1855	-	TSC_hg19_v1_chr3_-_50374802 AF040703	-1930	-	AB528642 AK300994 AF102770 AF102771 AF102772 AF286217 AF291719 AF132675 TSC_hg19_v1_chr3_-_50378282 BC117153 BC143879 NM_001206957 NM_007182 NM_170714	1563	-	AB464423 AM392817 AM393187 CU689716 BC033732 TSC_hg19_v1_chr3_-_50383103 AK223343 AL833828 AK058135 AK308086 U70824 U70880 BC022186 NM_015896 AK315123	6353	-	HQ257917 AF040707 AF040708 AK292196 TSC_hg19_v1_chr3_-_50388213 BC002791 BC056861 AK309658 AL833426 BC050412 BC063030 BC021984	11425	-	AF132677|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##BC110412|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_170712|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AK292638|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF061836|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_170713|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF040703|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AK300994|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF102770|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF102771|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF102772|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF286217|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF291719|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AF132675|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##BC117153|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##BC143879|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_001206957|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_007182|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##NM_170714|RASSF1|11186|Ras association (RalGDS/AF-6) domain family member 1##AM392817|ZMYND10|51364|zinc finger, MYND-type containing 10##AM393187|ZMYND10|51364|zinc finger, MYND-type containing 10##BC033732|ZMYND10|51364|zinc finger, MYND-type containing 10##AK223343|ZMYND10|51364|zinc finger, MYND-type containing 10##AL833828|ZMYND10|51364|zinc finger, MYND-type containing 10##AK058135|ZMYND10|51364|zinc finger, MYND-type containing 10##AK308086|ZMYND10|51364|zinc finger, MYND-type containing 10##U70824|ZMYND10|51364|zinc finger, MYND-type containing 10##U70880|ZMYND10|51364|zinc finger, MYND-type containing 10##BC022186|ZMYND10|51364|zinc finger, MYND-type containing 10##NM_015896|ZMYND10|51364|zinc finger, MYND-type containing 10##AK315123|ZMYND10|51364|zinc finger, MYND-type containing 10##AF040707|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AF040708|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AK292196|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC056861|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AK309658|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##AL833426|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC050412|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC063030|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)##BC021984|NPRL2|10641|nitrogen permease regulator-like 2 (S. cerevisiae)	0.992544	0.0	
chr5	142435805	142435950	reg1007243.p1	5.436	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-285569	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-285905	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-358306	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	346946	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	347229	-	BC015610 TSC_hg19_v1_chr5_-_142783214	347334	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.996201	0.020209	
chr7	65446024	65446144	reg1008263.p1	5.436	+	AK000750 TSC_hg19_v1_chr7_+_65420514	-25572	+	TSC_hg19_v1_chr7_+_65419443 AK001747	-26568	+	TSC_hg19_v1_chr7_+_65338352 AK304077	-107708	+	TSC_hg19_v1_chr7_-_65447185 BC014142 DQ892941 DQ896190 CU680802	1090	-	TSC_hg19_v1_chr7_-_65447200 M15182 AK303819 AK223406 AK300223 AK311273	1111	-	TSC_hg19_v1_chr7_-_65447209 AK312752	1134	-	AK000750|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK001747|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK304077|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BC014142|GUSB|2990|glucuronidase, beta##DQ892941|GUSB|2990|glucuronidase, beta##DQ896190|GUSB|2990|glucuronidase, beta##M15182|GUSB|2990|glucuronidase, beta##AK303819|GUSB|2990|glucuronidase, beta##AK223406|GUSB|2990|glucuronidase, beta##AK300223|GUSB|2990|glucuronidase, beta##AK311273|GUSB|2990|glucuronidase, beta##AK312752|GUSB|2990|glucuronidase, beta	0.0	0.0	
chrX	19868018	19868198	reg1001129.p2	5.436	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-50196	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-50233	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-179052	-	TSC_hg19_v1_chrX_-_19905450 AY542305	37355	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	37524	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	37596	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chr11	88036218	88036398	reg1009598.p2	5.435	+	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	-127716	-	AK024853 TSC_hg19_v1_chr11_+_87032449	-1003866	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-1287330	+	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	34559	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	34594	-	TSC_hg19_v1_chr11_-_88070905 BX537913 NM_001114173 NM_001814 NM_148170	34623	-	BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AK024853|TMEM135|65084|transmembrane protein 135##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C##BX537913|CTSC|1075|cathepsin C##NM_001114173|CTSC|1075|cathepsin C##NM_001814|CTSC|1075|cathepsin C##NM_148170|CTSC|1075|cathepsin C	0.0	0.0	
chr11	90383383	90383524	reg1007569.p2	5.435	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-399043	+	AK290231 NM_001144073 NM_012124	-426922	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-427251	-	NM_001008781	1701808	+	BC069163 NM_005959 U25341 AY521019	2319386	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2547534	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.0	0.0	
chr5	74821999	74822122	reg1009398.p1	5.435	+	NM_001130105	-14255	-	AF163570 NM_016218 TSC_hg19_v1_chr5_+_74807715 AK091659 AK314610 AK026316 AF194973 AF315601 AF318313	-14324	+	TSC_hg19_v1_chr5_-_74807448 AK091851 AK292087 AX747221 NM_005713 NM_031361	-14591	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	186202	-	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	191200	-	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	557211	+	NM_001130105|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AF163570|POLK|51426|polymerase (DNA directed) kappa##NM_016218|POLK|51426|polymerase (DNA directed) kappa##AK091659|POLK|51426|polymerase (DNA directed) kappa##AK314610|POLK|51426|polymerase (DNA directed) kappa##AK026316|POLK|51426|polymerase (DNA directed) kappa##AF194973|POLK|51426|polymerase (DNA directed) kappa##AF318313|POLK|51426|polymerase (DNA directed) kappa##AK091851|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AK292087|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##NM_005713|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##NM_031361|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C	0.983043	0.0	denovo_WM_7:0:0.542	denovo_WM_7:1:0.292
chr1	47902235	47902363	reg1000978.p4	5.433	+	AF042832 NM_004474	-611	+	AF275722 NM_012186	-20556	+	TSC_hg19_v1_chr1_+_47799646 AF259961	-102658	+	NM_001194986	560262	-	BC104857 BC104863 BC143570 BC143587 NM_001011547 NM_001135181 BC143572 TSC_hg19_v1_chr1_+_48688387 BC048332 AK131200 BX648549 AK296133	786093	+	TSC_hg19_v1_chr1_-_48937679 CU676616 DQ892001 DQ895191 BC020660	1035379	-	AF042832|FOXD2|2306|forkhead box D2##NM_004474|FOXD2|2306|forkhead box D2##AF275722|FOXE3|2301|forkhead box E3##NM_012186|FOXE3|2301|forkhead box E3##AF259961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##NM_001194986|LOC388630|388630|UPF0632 protein A##BC104857|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC104863|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143570|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143587|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001011547|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001135181|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143572|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC048332|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK131200|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BX648549|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK296133|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##DQ892001|SPATA6|54558|spermatogenesis associated 6##DQ895191|SPATA6|54558|spermatogenesis associated 6##BC020660|SPATA6|54558|spermatogenesis associated 6	0.0	0.0	
chr19	59090115	59090229	reg1009097.p2	5.433	+	TSC_hg19_v1_chr19_+_59086818 BC065480 BC067232 BC043401 AK000827 AK311347 BC000766 BC001952	-3351	+	TSC_hg19_v1_chr19_-_59084939 AF055077 AF055078 NM_003422 NM_198055	-5224	-	TSC_hg19_v1_chr19_-_59084737 BC007777	-5342	-	None	None	None	None	None	None	None	None	None	BC065480|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC067232|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC043401|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##AK000827|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##AK311347|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC000766|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##BC001952|MGC2752|65996|CENPB DNA-binding domains containing 1 pseudogene##AF055077|MZF1|7593|myeloid zinc finger 1##AF055078|MZF1|7593|myeloid zinc finger 1##NM_003422|MZF1|7593|myeloid zinc finger 1##NM_198055|MZF1|7593|myeloid zinc finger 1##BC007777|MZF1|7593|myeloid zinc finger 1	0.0	0.0	
chr3	33759784	33759908	reg1001473.p1	5.433	+	TSC_hg19_v1_chr3_-_33759747 AK091451 AX746992	-51	-	TSC_hg19_v1_chr3_-_33759706 NM_015097	-151	-	BC140778 TSC_hg19_v1_chr3_-_33759667	-242	-	TSC_hg19_v1_chr3_+_33840062 NM_001162429 NM_013374	80217	+	TSC_hg19_v1_chr3_+_33840081 BC068454 AF349951	80237	+	TSC_hg19_v1_chr3_+_33840120 AF151793 BC020066	80261	+	AK091451|CLASP2|23122|cytoplasmic linker associated protein 2##NM_015097|CLASP2|23122|cytoplasmic linker associated protein 2##BC140778|CLASP2|23122|cytoplasmic linker associated protein 2##NM_001162429|PDCD6IP|10015|programmed cell death 6 interacting protein##NM_013374|PDCD6IP|10015|programmed cell death 6 interacting protein##BC068454|PDCD6IP|10015|programmed cell death 6 interacting protein##AF349951|PDCD6IP|10015|programmed cell death 6 interacting protein##AF151793|PDCD6IP|10015|programmed cell death 6 interacting protein##BC020066|PDCD6IP|10015|programmed cell death 6 interacting protein	0.0	0.0	
chr6	50763464	50763580	reg1006440.p1	5.433	+	AY028376 NM_172238	-82266	+	DQ012016 NM_001037498	-747159	-	DQ012014 DQ012015 NM_001037497 NM_001037728	-773852	-	NM_003221 BC037225 AK291172 AK313749 AB528472 X95694 DQ891443 DQ894621	23013	+	AF480064 TSC_hg19_v1_chr6_-_51952394 AY092083 AY074797 NM_138694 NM_170724	1188873	-	NM_002190 U32659 BC066251 BC066252 BC066253 BC067503 BC067504 BC067505 Z58820 AB590712 CU688116	1287684	+	AY028376|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##NM_172238|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##DQ012016|DEFB112|245915|defensin, beta 112##NM_001037498|DEFB112|245915|defensin, beta 112##DQ012014|DEFB110|245913|defensin, beta 110 locus##DQ012015|DEFB110|245913|defensin, beta 110 locus##NM_001037497|DEFB110|245913|defensin, beta 110 locus##NM_001037728|DEFB110|245913|defensin, beta 110 locus##NM_003221|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##BC037225|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK291172|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK313749|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##X95694|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ891443|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ894621|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AF480064|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY092083|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY074797|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_138694|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_170724|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_002190|IL17A|3605|interleukin 17A##U32659|IL17A|3605|interleukin 17A##BC066251|IL17A|3605|interleukin 17A##BC066252|IL17A|3605|interleukin 17A##BC066253|IL17A|3605|interleukin 17A##BC067503|IL17A|3605|interleukin 17A##BC067504|IL17A|3605|interleukin 17A##BC067505|IL17A|3605|interleukin 17A##Z58820|IL17A|3605|interleukin 17A	0.997731	0.0	denovo_WM_7:15:0.470	denovo_WM_7:16:0.527
chr15	35286366	35286517	reg1009594.p2	5.432	+	NM_014106 TSC_hg19_v1_chr15_-_35280498	-5929	-	TSC_hg19_v1_chr15_-_35280489 BC071603 AK291438	-5987	-	AB384497 AK291615 BC127111 BC127112 TSC_hg19_v1_chr15_-_35261899 AB011132 AK315815 BX647820 EF553519 NM_014691	-24514	-	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	551945	-	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	1585458	+	NM_032499	1646364	+	NM_014106|ZNF770|54989|zinc finger protein 770##BC071603|ZNF770|54989|zinc finger protein 770##AK291438|ZNF770|54989|zinc finger protein 770##AK291615|AQR|9716|aquarius homolog (mouse)##BC127111|AQR|9716|aquarius homolog (mouse)##BC127112|AQR|9716|aquarius homolog (mouse)##AB011132|AQR|9716|aquarius homolog (mouse)##AK315815|AQR|9716|aquarius homolog (mouse)##BX647820|AQR|9716|aquarius homolog (mouse)##EF553519|AQR|9716|aquarius homolog (mouse)##NM_014691|AQR|9716|aquarius homolog (mouse)##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##NM_032499|C15orf41|84529|chromosome 15 open reading frame 41	0.367196	0.0	
chr15	59392850	59393003	reg1009120.p1	5.432	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-33848	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-112647	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-113069	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	4445	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	106126	+	AB290177 TSC_hg19_v1_chr15_-_59665055	272128	-	AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE	0.998983	0.0	
chr14	93235249	93235384	reg1009159.p2	5.431	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	-20357	-	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-116493	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-116680	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	25370	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	154128	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	154281	+	Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	0.996941	0.0	denovo_WM_7:5:0.841
chr15	28907805	28907905	reg1009279.p1	5.431	+	AF071172 BC015486 BC142951 BC045544 NM_004667	-340584	-	M99564 TSC_hg19_v1_chr15_-_28344462 BC012097 NM_000275	-563422	-	NM_033223 BC029850 BC045709 S82769	-1691308	+	TSC_hg19_v1_chr15_+_29033278 AK302529	125468	+	TSC_hg19_v1_chr15_+_29077475 BC018626	169627	+	NM_001130414 NM_005503 AF047348 BC082986	305994	+	AF071172|HERC2|8924|hect domain and RLD 2##BC015486|HERC2|8924|hect domain and RLD 2##BC142951|HERC2|8924|hect domain and RLD 2##BC045544|HERC2|8924|hect domain and RLD 2##NM_004667|HERC2|8924|hect domain and RLD 2##M99564|OCA2|4948|oculocutaneous albinism II##BC012097|OCA2|4948|oculocutaneous albinism II##NM_000275|OCA2|4948|oculocutaneous albinism II##NM_033223|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##BC029850|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##BC045709|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##S82769|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##AK302529|LOC100289656|100289656|Dexi homolog (mouse) pseudogene##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2	1.088016	0.0	denovo_WM_7:38:0.456	denovo_WM_7:39:0.456
chr19	14481114	14481294	reg1000566.p2	5.430	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-164156	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-220404	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-233213	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	10845	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	11051	+	TSC_hg19_v1_chr19_-_14529877 AK301847	48685	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.076511	0.0	
chr19	14126711	14126785	reg1007284.p2	5.429	+	BC049826 TSC_hg19_v1_chr19_-_14117133 AK309824 NM_002918	-9619	-	TSC_hg19_v1_chr19_-_14116878 X58964	-9834	-	AK027100 AK298489 NM_001146254 NM_001146255	-62551	-	BC140935 AB076563 AF447451 BC110069 NM_080864	12239	+	NM_004843	15513	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	15766	+	BC049826|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK309824|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##NM_002918|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##X58964|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK027100|PODNL1|79883|podocan-like 1##AK298489|PODNL1|79883|podocan-like 1##NM_001146254|PODNL1|79883|podocan-like 1##NM_001146255|PODNL1|79883|podocan-like 1##BC140935|RLN3|117579|relaxin 3##AB076563|RLN3|117579|relaxin 3##AF447451|RLN3|117579|relaxin 3##BC110069|RLN3|117579|relaxin 3##NM_080864|RLN3|117579|relaxin 3##NM_004843|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha	0.844234	0.0	denovo_WM_7:62:0.201	denovo_WM_7:65:0.465
chr19	4182522	4182636	reg1008794.p1	5.429	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	-34	-	TSC_hg19_v1_chr19_+_4153636 AK313099 AB050902 AK172839 NM_032607 AB073612 BC101504 BC143609 BC143610 BC101508 EU446882	-28912	+	TSC_hg19_v1_chr19_-_4124145 BC000471 NM_030662	-58446	-	NM_133475	771	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	46941	+	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	64511	+	DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##AK313099|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AB050902|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AK172839|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##NM_032607|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##AB073612|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC101504|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC143609|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC143610|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC101508|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##EU446882|CREB3L3|84699|cAMP responsive element binding protein 3-like 3##BC000471|MAP2K2|5605|mitogen-activated protein kinase kinase 2##NM_030662|MAP2K2|5605|mitogen-activated protein kinase kinase 2##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94	0.0	0.0	
chr3	98620891	98621071	reg1008916.p1	5.429	+	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	-489	-	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	-169394	+	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	-169736	+	AK311449 NM_001850 NM_020351 AF170702 BC013581	736469	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	915764	+	TSC_hg19_v1_chr3_-_99595018 EU531865 EU531866 BC027860 AK225855 AK096195 NM_014890	974010	-	AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26##EU531865|FILIP1L|11259|filamin A interacting protein 1-like##EU531866|FILIP1L|11259|filamin A interacting protein 1-like##BC027860|FILIP1L|11259|filamin A interacting protein 1-like##AK225855|FILIP1L|11259|filamin A interacting protein 1-like##AK096195|FILIP1L|11259|filamin A interacting protein 1-like##NM_014890|FILIP1L|11259|filamin A interacting protein 1-like	0.999144	0.0	denovo_WM_7:68:0.739
chr17	3691706	3691836	reg1007564.p2	5.428	+	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	-64555	+	TSC_hg19_v1_chr17_-_3627077 AF289864	-64669	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-92179	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	12682	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	12740	-	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	57739	-	BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85	0.997265	0.0	
chr17	80498518	80498698	reg1000472.p2	5.428	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-21018	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-81966	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-82045	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	107675	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	157926	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	175998	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	0.0	0.0	
chr5	130753078	130753213	reg1008222.p2	5.428	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-153345	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-153377	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-153389	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	217612	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	217674	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	217733	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.190946	0.994489	CTCF.p2:8:0.994
chr7	23554633	23554794	reg1008745.p2	5.428	+	TSC_hg19_v1_chr7_+_23530136 BC026177	-24546	+	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	-44715	-	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	-45034	-	CU677835 DQ892442 DQ895653 AB528532 TSC_hg19_v1_chr7_-_23571604 BC069011 BC017094 U53209 AB097048 AK300565 AK311687 AK314801 AK300741 AK310719 AK298815 NM_013293	16851	-	TSC_hg19_v1_chr7_+_23637005 NM_138771 AK289911 AY358713 AX721042	82302	+	TSC_hg19_v1_chr7_+_23719821 NM_001127364 NM_001127365 NM_199136 BC042034 AK127774 AL832127 BC026000 BC063130 CU687660	165110	+	BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##DQ892442|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##DQ895653|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC069011|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC017094|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##U53209|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AB097048|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300565|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK311687|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK314801|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300741|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK310719|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK298815|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_013293|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_138771|CCDC126|90693|coiled-coil domain containing 126##AK289911|CCDC126|90693|coiled-coil domain containing 126##AY358713|CCDC126|90693|coiled-coil domain containing 126##NM_001127364|C7orf46|340277|chromosome 7 open reading frame 46##NM_001127365|C7orf46|340277|chromosome 7 open reading frame 46##NM_199136|C7orf46|340277|chromosome 7 open reading frame 46##BC042034|C7orf46|340277|chromosome 7 open reading frame 46##AK127774|C7orf46|340277|chromosome 7 open reading frame 46##AL832127|C7orf46|340277|chromosome 7 open reading frame 46##BC026000|C7orf46|340277|chromosome 7 open reading frame 46##BC063130|C7orf46|340277|chromosome 7 open reading frame 46	0.0	0.0	
chr4	9770535	9770676	reg1009577.p1	5.427	+	AF529414 NM_001040448	-324346	+	BC100993 AY509884 BC100991 BC100992 NM_001105662 NM_001242326 NM_001242327 NM_001242328 NM_001242329 NM_001242330 NM_001242331 NM_001242332	-405752	+	AF544012 BC100991 NM_001105662	-410497	+	NM_000798	12652	+	TSC_hg19_v1_chr4_-_10023140 AF210317 NM_020041 BC110414	252519	-	AK310895 BC018897 NM_001001290 AK096819	271317	-	AF529414|DEFB131|644414|defensin, beta 131##NM_001040448|DEFB131|644414|defensin, beta 131##BC100993|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_001242326|LOC728373|728373|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242327|LOC728369|728369|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242328|LOC728379|728379|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242329|USP17L5|728386|ubiquitin specific peptidase 17-like 5##NM_001242330|LOC728393|728393|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242331|LOC728400|728400|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242332|LOC728405|728405|ubiquitin carboxyl-terminal hydrolase 17-like##AF544012|USP17|391627|ubiquitin specific peptidase 17##BC100991|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_000798|DRD5|1816|dopamine receptor D5##AF210317|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_020041|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC110414|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK310895|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC018897|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_001001290|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK096819|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	0.992735	0.0	
chr7	154796247	154796414	reg1009049.p1	5.427	+	TSC_hg19_v1_chr7_+_154795161 BC035068 BC048116 AL713756	-1119	+	TSC_hg19_v1_chr7_-_154794664 AK293744 AK123600 NM_007349 AK307417	-1660	-	TSC_hg19_v1_chr7_+_154720213 BC033053 AK311721 AK056609 BC050402	-76133	+	BC112021 BC113468 NM_024012 AB464445 AF498985 HQ258207	66247	+	TSC_hg19_v1_chr7_+_155089559 NM_005542 NM_198336 NM_198337 BC001880	293192	+	AK291675 TSC_hg19_v1_chr7_+_155089667	293314	+	BC035068|LOC202781|202781|uncharacterized LOC202781##BC048116|LOC202781|202781|uncharacterized LOC202781##AL713756|LOC202781|202781|uncharacterized LOC202781##AK293744|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##AK123600|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##NM_007349|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##AK307417|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##BC033053|LOC100132707|100132707|uncharacterized LOC100132707##AK311721|LOC100132707|100132707|uncharacterized LOC100132707##AK056609|LOC100132707|100132707|uncharacterized LOC100132707##BC050402|LOC100132707|100132707|uncharacterized LOC100132707##BC112021|HTR5A|3361|5-hydroxytryptamine (serotonin) receptor 5A##BC113468|HTR5A|3361|5-hydroxytryptamine (serotonin) receptor 5A##NM_024012|HTR5A|3361|5-hydroxytryptamine (serotonin) receptor 5A##AF498985|HTR5A|3361|5-hydroxytryptamine (serotonin) receptor 5A##HQ258207|HTR5A|3361|5-hydroxytryptamine (serotonin) receptor 5A##NM_005542|INSIG1|3638|insulin induced gene 1##NM_198336|INSIG1|3638|insulin induced gene 1##NM_198337|INSIG1|3638|insulin induced gene 1##BC001880|INSIG1|3638|insulin induced gene 1##AK291675|INSIG1|3638|insulin induced gene 1	0.87476	0.0	denovo_WM_7:-28:0.388	denovo_WM_7:-29:0.255
chr15	43388296	43388405	reg1008436.p2	5.426	+	AF525400 TSC_hg19_v1_chr15_-_43212975 AK131372 BC041876 NM_173500 BC071556	-175368	-	TSC_hg19_v1_chr15_-_43029327 AF525398 NM_138477	-358983	-	TSC_hg19_v1_chr15_-_43029313 BC052568 BC066640	-359130	-	AF525401 AY061886 AK292516 TSC_hg19_v1_chr15_-_43398234 AK056441 NM_174916 BC113505 BC113507 AK302489	9889	-	TSC_hg19_v1_chr15_-_43408716 D28374	20359	-	TSC_hg19_v1_chr15_+_43425795 BC009981 NM_024956	37563	+	AF525400|TTBK2|146057|tau tubulin kinase 2##AK131372|TTBK2|146057|tau tubulin kinase 2##BC041876|TTBK2|146057|tau tubulin kinase 2##NM_173500|TTBK2|146057|tau tubulin kinase 2##BC071556|TTBK2|146057|tau tubulin kinase 2##AF525398|CDAN1|146059|congenital dyserythropoietic anemia, type I##NM_138477|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC052568|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC066640|CDAN1|146059|congenital dyserythropoietic anemia, type I##AF525401|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AY061886|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK292516|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK056441|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##NM_174916|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113505|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113507|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK302489|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##D28374|RPS3A|6189|ribosomal protein S3A##BC009981|TMEM62|80021|transmembrane protein 62##NM_024956|TMEM62|80021|transmembrane protein 62	0.999485	0.0	denovo_WM_7:29:0.762
chr15	76217928	76218075	reg1008867.p1	5.426	+	TSC_hg19_v1_chr15_+_76196276 BC020204 NM_012170 NM_147188 AK307084 AK024048 BC041691 AK223500 BC039024 AK294311 BC008762 BC032540 CU692024 AY005144	-21752	+	AK296234 NM_001145335 TSC_hg19_v1_chr15_+_76136384	-81613	+	TSC_hg19_v1_chr15_+_76135995 CU676032 AK294199	-81963	+	CR749519 AK311507 BC017568 NM_138573	86772	-	AK311204 TSC_hg19_v1_chr15_-_76352131	134101	-	TSC_hg19_v1_chr15_+_76352281 AK095509 NM_152335	134288	+	BC020204|FBXO22|26263|F-box protein 22##NM_012170|FBXO22|26263|F-box protein 22##NM_147188|FBXO22|26263|F-box protein 22##AK307084|FBXO22|26263|F-box protein 22##AK024048|FBXO22|26263|F-box protein 22##BC041691|FBXO22|26263|F-box protein 22##AK223500|FBXO22|26263|F-box protein 22##BC039024|FBXO22|26263|F-box protein 22##AK294311|FBXO22|26263|F-box protein 22##BC032540|FBXO22|26263|F-box protein 22##AY005144|FBXO22|26263|F-box protein 22##AK296234|UBE2Q2|92912|ubiquitin-conjugating enzyme E2Q family member 2##NM_001145335|UBE2Q2|92912|ubiquitin-conjugating enzyme E2Q family member 2##AK294199|UBE2Q2|92912|ubiquitin-conjugating enzyme E2Q family member 2##CR749519|NRG4|145957|neuregulin 4##AK311507|NRG4|145957|neuregulin 4##BC017568|NRG4|145957|neuregulin 4##NM_138573|NRG4|145957|neuregulin 4##AK311204|NRG4|145957|neuregulin 4##AK095509|C15orf27|123591|chromosome 15 open reading frame 27##NM_152335|C15orf27|123591|chromosome 15 open reading frame 27	0.999658	0.0	denovo_WM_7:22:0.425	denovo_WM_7:23:0.425
chr19	48112319	48112422	reg1000976.p2	5.426	+	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	-926	+	NM_001101419	-53258	-	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-93955	-	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	104280	+	NM_015710 TSC_hg19_v1_chr19_+_48248797	136424	+	TSC_hg19_v1_chr19_+_48248802 AK303180 AK297877 AK303918 AK309788 AK301117 AF182076 BC006311 BC013203 AY535000 CU679611 DQ892724 DQ895973 AK024486 BC013235 BC013307 BC014009 BC039869 BC007248 BC004229 AF296124 AL359336 AL359335	136465	+	BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_001101419|ZNF541|84215|zinc finger protein 541##BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2##NM_015710|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK297877|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK303918|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK309788|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK301117|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AF182076|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC006311|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013203|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AY535000|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##DQ892724|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##DQ895973|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AK024486|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013235|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC013307|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC014009|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC039869|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC007248|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##BC004229|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AF296124|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AL359336|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2##AL359335|GLTSCR2|29997|glioma tumor suppressor candidate region gene 2	0.0	0.018565	
chr3	56488817	56488954	reg1012535.p1	5.426	+	TSC_hg19_v1_chr3_-_55521567 AK090582	-967267	-	BC064694 NM_003392 AK290375 TSC_hg19_v1_chr3_-_55521332	-967553	-	AK290869 TSC_hg19_v1_chr3_-_55515412	-973477	-	BC111550 BC112391 AB002376 NM_015576	13492	-	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	102317	+	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	102361	+	AK090582|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC064694|WNT5A|7474|wingless-type MMTV integration site family, member 5A##NM_003392|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290375|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290869|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC111550|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##BC112391|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##AB002376|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_015576|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66	0.995118	0.0	
chr1	155930200	155930340	reg1008995.p1	5.425	+	NM_181885 BC101507 BC101509 AY170824 AY288415 AY394502 EU432129	-18781	+	TSC_hg19_v1_chr1_-_155904201 AK225714	-26068	-	BC027182 TSC_hg19_v1_chr1_-_155904193 AB020714	-26080	-	TSC_hg19_v1_chr1_-_155939059 AM393305 BT007407 CU676564 DQ891489 DQ894678	8791	-	TSC_hg19_v1_chr1_-_155947967 AL512715 NM_004723	17675	-	TSC_hg19_v1_chr1_-_155948245 AF486838	17956	-	NM_181885|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##BC101507|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##BC101509|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AY170824|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AY288415|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AY394502|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##EU432129|RXFP4|339403|relaxin/insulin-like family peptide receptor 4##AK225714|KIAA0907|22889|KIAA0907##BC027182|KIAA0907|22889|KIAA0907##AB020714|KIAA0907|22889|KIAA0907##AM393305|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##BT007407|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##DQ891489|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##DQ894678|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##AL512715|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##NM_004723|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2##AF486838|ARHGEF2|9181|Rho/Rac guanine nucleotide exchange factor (GEF) 2	0.999637	0.0	denovo_WM_7:-2:0.720
chr12	49656156	49656318	reg1007808.p2	5.425	+	TSC_hg19_v1_chr12_-_49582864 BC006468 BC050637 AF141347 AK057842 AK297775 BC057823 NM_006009 AK298838	-73405	-	TSC_hg19_v1_chr12_-_49582309 AK289483	-73853	-	TSC_hg19_v1_chr12_-_49525284 NM_006082	-130950	-	TSC_hg19_v1_chr12_+_49658864 D28390 AK223024 BC005946 NM_032704	2626	+	TSC_hg19_v1_chr12_+_49658867 BC011790 BC004949 BC033064 BC051297 BC019298 BC021088	2647	+	NM_006262 TSC_hg19_v1_chr12_+_49688929 BC032703 AB528454 CU689492 DQ893358 DQ896677	32708	+	BC006468|TUBA1A|7846|tubulin, alpha 1a##BC050637|TUBA1A|7846|tubulin, alpha 1a##AF141347|TUBA1A|7846|tubulin, alpha 1a##AK057842|TUBA1A|7846|tubulin, alpha 1a##AK297775|TUBA1A|7846|tubulin, alpha 1a##BC057823|TUBA1A|7846|tubulin, alpha 1a##NM_006009|TUBA1A|7846|tubulin, alpha 1a##AK298838|TUBA1A|7846|tubulin, alpha 1a##AK289483|TUBA1A|7846|tubulin, alpha 1a##NM_006082|TUBA1B|10376|tubulin, alpha 1b##D28390|TUBA1C|84790|tubulin, alpha 1c##AK223024|TUBA1C|84790|tubulin, alpha 1c##BC005946|TUBA1C|84790|tubulin, alpha 1c##NM_032704|TUBA1C|84790|tubulin, alpha 1c##BC011790|TUBA1C|84790|tubulin, alpha 1c##BC004949|TUBA1C|84790|tubulin, alpha 1c##BC033064|TUBA1C|84790|tubulin, alpha 1c##BC051297|TUBA1C|84790|tubulin, alpha 1c##BC019298|TUBA1C|84790|tubulin, alpha 1c##BC021088|TUBA1C|84790|tubulin, alpha 1c##NM_006262|PRPH|5630|peripherin##BC032703|PRPH|5630|peripherin##DQ893358|PRPH|5630|peripherin##DQ896677|PRPH|5630|peripherin	1.992006	0.0	denovo_WM_7:-13:0.837
chr15	79168842	79168957	reg1004228.p1	5.425	+	TSC_hg19_v1_chr15_+_79165343 AK300789 BC067826 AB385578 CU692730 DQ892602 DQ895837 AK310181	-3536	+	TSC_hg19_v1_chr15_+_79165314 AK310702 BC141840 AF070664 AF167173 AK310592 AL137697 AF109188 AF161546	-3580	+	TSC_hg19_v1_chr15_+_79165283 AK098485 AF218011 AF100615 AY148481 AK296650 BC002936 BC022845	-3652	+	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	68436	-	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	68500	-	NM_153815 S62035	129102	-	AK300789|MORF4L1|10933|mortality factor 4 like 1##BC067826|MORF4L1|10933|mortality factor 4 like 1##DQ892602|MORF4L1|10933|mortality factor 4 like 1##DQ895837|MORF4L1|10933|mortality factor 4 like 1##AK310181|MORF4L1|10933|mortality factor 4 like 1##AK310702|MORF4L1|10933|mortality factor 4 like 1##BC141840|MORF4L1|10933|mortality factor 4 like 1##AF070664|MORF4L1|10933|mortality factor 4 like 1##AF167173|MORF4L1|10933|mortality factor 4 like 1##AK310592|MORF4L1|10933|mortality factor 4 like 1##AL137697|MORF4L1|10933|mortality factor 4 like 1##AF109188|MORF4L1|10933|mortality factor 4 like 1##AF161546|MORF4L1|10933|mortality factor 4 like 1##AK098485|MORF4L1|10933|mortality factor 4 like 1##AF218011|MORF4L1|10933|mortality factor 4 like 1##AF100615|MORF4L1|10933|mortality factor 4 like 1##AY148481|MORF4L1|10933|mortality factor 4 like 1##AK296650|MORF4L1|10933|mortality factor 4 like 1##BC002936|MORF4L1|10933|mortality factor 4 like 1##BC022845|MORF4L1|10933|mortality factor 4 like 1##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1	0.0	0.0	
chr2	134939033	134939173	reg1008738.p1	5.425	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-613065	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-759749	-	AK124659 TSC_hg19_v1_chr2_-_133539761	-1399409	-	NM_002410 D17716 AF113921	72782	+	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	537453	-	AK125008 NM_138326 BC016018 BC107420 AB071418	657115	+	AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##AK124659|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	0.972301	0.0	denovo_WM_7:30:0.880
chr7	44121170	44121312	reg1009322.p2	5.425	+	M18172 BC073741 BC001904 NM_000290	-16068	-	TSC_hg19_v1_chr7_+_44084324 AK300630 AF151364 BC031687 AB527593 CU680006 CU689228 AF197060 AF250287 CR457167	-36905	+	AK293340 TSC_hg19_v1_chr7_+_44084309 AK027367 BC011677	-36931	+	CU693204 TSC_hg19_v1_chr7_-_44122073 BC062590 BC035685 AF176097 AJ131891 AJ844643 AK307634 AK291638	818	-	BC049202 TSC_hg19_v1_chr7_-_44122083 AK092903 AX747799	844	-	TSC_hg19_v1_chr7_-_44122105 AK294449 BC026306 AK023002 NM_013284	875	-	M18172|PGAM2|5224|phosphoglycerate mutase 2 (muscle)##BC073741|PGAM2|5224|phosphoglycerate mutase 2 (muscle)##BC001904|PGAM2|5224|phosphoglycerate mutase 2 (muscle)##NM_000290|PGAM2|5224|phosphoglycerate mutase 2 (muscle)##AK300630|DBNL|28988|drebrin-like##AF151364|DBNL|28988|drebrin-like##BC031687|DBNL|28988|drebrin-like##AF197060|DBNL|28988|drebrin-like##AF250287|DBNL|28988|drebrin-like##CR457167|DBNL|28988|drebrin-like##AK293340|DBNL|28988|drebrin-like##AK027367|DBNL|28988|drebrin-like##BC011677|DBNL|28988|drebrin-like##BC062590|POLM|27434|polymerase (DNA directed), mu##BC035685|POLM|27434|polymerase (DNA directed), mu##AF176097|POLM|27434|polymerase (DNA directed), mu##AJ131891|POLM|27434|polymerase (DNA directed), mu##AK307634|POLM|27434|polymerase (DNA directed), mu##AK291638|POLM|27434|polymerase (DNA directed), mu##BC049202|POLM|27434|polymerase (DNA directed), mu##AK092903|POLM|27434|polymerase (DNA directed), mu##AK294449|POLM|27434|polymerase (DNA directed), mu##BC026306|POLM|27434|polymerase (DNA directed), mu##AK023002|POLM|27434|polymerase (DNA directed), mu##NM_013284|POLM|27434|polymerase (DNA directed), mu	0.014721	0.0	
chr7	6422570	6422681	reg1007552.p1	5.425	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	-8398	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-34115	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-110394	-	TSC_hg19_v1_chr7_-_6474593 AK298910	51965	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	64914	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	64983	-	NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta	0.0	0.0	
chr12	82350873	82351013	reg1008260.p2	5.424	+	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-197834	-	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	-198572	-	AK294505 AK297372 AK299853 NM_001220477 NM_001220478	-358889	-	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	401233	-	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	401366	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	729757	+	AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	1.113355	0.0	denovo_WM_7:-13:0.325	denovo_WM_7:-15:0.326
chr2	98606724	98606854	reg1008768.p1	5.424	+	AK025852 TSC_hg19_v1_chr2_-_98408976	-197867	-	AB083211 NM_207519	-255921	+	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	-276747	+	AK297450 TSC_hg19_v1_chr2_-_98612338 NM_015348	5397	-	TSC_hg19_v1_chr2_-_98612395 AK098792	5614	-	NM_144992 AL832761 BC095480 TSC_hg19_v1_chr2_+_98703652 AK292397 AK057248 AL832635 BC150653 AK302390 BC026091	96857	+	AK025852|TMEM131|23505|transmembrane protein 131##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK297450|TMEM131|23505|transmembrane protein 131##NM_015348|TMEM131|23505|transmembrane protein 131##AK098792|TMEM131|23505|transmembrane protein 131##NM_144992|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832761|VWA3B|200403|von Willebrand factor A domain containing 3B##BC095480|VWA3B|200403|von Willebrand factor A domain containing 3B##AK292397|VWA3B|200403|von Willebrand factor A domain containing 3B##AK057248|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832635|VWA3B|200403|von Willebrand factor A domain containing 3B##BC150653|VWA3B|200403|von Willebrand factor A domain containing 3B##AK302390|VWA3B|200403|von Willebrand factor A domain containing 3B##BC026091|VWA3B|200403|von Willebrand factor A domain containing 3B	0.99698	0.0	denovo_WM_7:-2:0.772
chr11	17376089	17376269	reg1007621.p2	5.423	+	TSC_hg19_v1_chr11_+_17373346 CR749521 NM_001202439 BX537685 BC136797 BC136800	-2838	+	TSC_hg19_v1_chr11_+_17332454 BC172867	-43696	+	TSC_hg19_v1_chr11_+_17298285 EU039832 EU039833 NM_005013 X76732 BC111556 AF450266	-77866	+	BC064497 NM_000525	34026	-	BC040617 AK301550 NM_001166290 TSC_hg19_v1_chr11_-_17410958	34731	-	U63421 HM635782 TSC_hg19_v1_chr11_-_17498355 AK297560 AF087138 L78207 AB209084	122164	-	CR749521|B7H6|374383|B7 homolog 6##NM_001202439|B7H6|374383|B7 homolog 6##BX537685|B7H6|374383|B7 homolog 6##BC136797|B7H6|374383|B7 homolog 6##BC136800|B7H6|374383|B7 homolog 6##EU039832|NUCB2|4925|nucleobindin 2##EU039833|NUCB2|4925|nucleobindin 2##NM_005013|NUCB2|4925|nucleobindin 2##X76732|NUCB2|4925|nucleobindin 2##BC111556|NUCB2|4925|nucleobindin 2##AF450266|NUCB2|4925|nucleobindin 2##BC064497|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_000525|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##BC040617|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##AK301550|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_001166290|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##U63421|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##HM635782|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AK297560|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AF087138|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##L78207|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AB209084|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	1.979544	0.997901	CTCF.p2:33:0.998	denovo_WM_7:-65:0.809	denovo_WM_7:-80:0.722
chr20	52377875	52378033	reg1008664.p1	5.423	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-167155	-	AF041259 NM_006526	-178319	-	AK302570 NM_001193421	-576133	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	309108	-	AK315220 NM_003657	309349	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	412566	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.998115	0.0	
chr2	78297958	78298107	reg1007556.p1	5.423	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	-548614	-	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-2359981	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-2360313	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	954806	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	1017101	-	AK307292 NM_002909 TSC_hg19_v1_chr2_+_79347583	1049504	+	BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta##AK307292|REG1A|5967|regenerating islet-derived 1 alpha##NM_002909|REG1A|5967|regenerating islet-derived 1 alpha	0.048727	0.0	
chrX	17567211	17567337	reg1010800.p1	5.423	+	TSC_hg19_v1_chrX_+_17393877 GQ988776	-173394	+	TSC_hg19_v1_chrX_+_17393806 BC136415 BC171763	-173463	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	-173732	+	AY456992 NM_001136024	86138	+	TSC_hg19_v1_chrX_+_17755572 BC026159 NM_001037535 NM_001037536 NM_001037540 NM_006746 AK313993 BC009193 AF160728	188321	+	AK056214 AK298873 AK314631 NM_001172732 NM_001172739 NM_001172743 NM_021785	312131	-	GQ988776|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC136415|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC171763|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY456992|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_001136024|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC026159|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_001037535|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_001037536|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_001037540|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_006746|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##AK313993|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##BC009193|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##AF160728|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##AK056214|RAI2|10742|retinoic acid induced 2##AK298873|RAI2|10742|retinoic acid induced 2##AK314631|RAI2|10742|retinoic acid induced 2##NM_001172732|RAI2|10742|retinoic acid induced 2##NM_001172739|RAI2|10742|retinoic acid induced 2##NM_001172743|RAI2|10742|retinoic acid induced 2##NM_021785|RAI2|10742|retinoic acid induced 2	0.993878	0.0	denovo_WM_7:-9:0.416	denovo_WM_7:-10:0.416
chr12	125484586	125484766	reg1007480.p1	5.422	+	TSC_hg19_v1_chr12_+_125478249 AF284094	-6416	+	TSC_hg19_v1_chr12_+_125478217 NM_080626 BC034525	-6486	+	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	-11032	-	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	65265	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	65392	+	NM_052907	326485	+	AF284094|BRI3BP|140707|BRI3 binding protein##NM_080626|BRI3BP|140707|BRI3 binding protein##BC034525|BRI3BP|140707|BRI3 binding protein##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##NM_052907|TMEM132B|114795|transmembrane protein 132B	1.972384	0.0	denovo_WM_7:-50:0.839	denovo_WM_7:-102:0.238	denovo_WM_7:-103:0.237	denovo_WM_7:-104:0.230	denovo_WM_7:-105:0.230
chr1	234747320	234747456	reg1009717.p2	5.421	+	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-2142	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-3530	-	TSC_hg19_v1_chr1_-_234743841 AK299768	-3557	-	TSC_hg19_v1_chr1_-_234895746 AF193050	148386	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	544701	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	544843	-	BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AF193050|PP2672|100130249|uncharacterized LOC100130249##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)	0.876078	0.0	denovo_WM_7:9:0.876
chr15	75261681	75261780	reg1004142.p1	5.421	+	AK000381 NM_017793	-11956	-	CU675593 AY034074 BC002497 BC007270 TSC_hg19_v1_chr15_-_75249114	-12706	-	TSC_hg19_v1_chr15_-_75230386 AK026623 BC024240 NM_004255	-31290	-	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	26177	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	54198	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	54251	+	AK000381|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_017793|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AY034074|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC002497|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC007270|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AK026623|COX5A|9377|cytochrome c oxidase subunit Va##BC024240|COX5A|9377|cytochrome c oxidase subunit Va##NM_004255|COX5A|9377|cytochrome c oxidase subunit Va##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase	1.992935	0.0	denovo_WM_7:51:0.248	denovo_WM_7:52:0.248	denovo_WM_7:53:0.248	denovo_WM_7:54:0.248	denovo_WM_7:-72:0.298	denovo_WM_7:-73:0.298	denovo_WM_7:-74:0.298
chr2	136997615	136997766	reg1010730.p2	5.421	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-122014	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-123892	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-254474	-	TSC_hg19_v1_chr2_+_137523114 AK299929	525426	+	NM_001080427	750771	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1724244	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	0.993693	0.0	denovo_WM_7:-73:0.813
chr8	29499350	29499476	reg1007258.p1	5.421	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-291343	-	AL137704 NM_057158	-293092	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-378799	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	441061	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	441159	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	453530	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	1.82094	0.0	denovo_WM_7:-18:0.493	denovo_WM_7:-19:0.493	denovo_WM_7:89:0.687
chrX	1599767	1599882	reg1001501.p2	5.421	+	AK301844 NM_001173473	-27173	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-28023	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-88855	-	BC043610 GQ280263 NM_178129 AK126147	56214	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	110705	+	NM_004043 U11090	114523	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.099221	0.0	denovo_WM_7:-17:0.558	denovo_WM_7:-20:0.367	denovo_WM_7:-107:0.762
chr11	3914818	3914901	reg1004977.p1	5.420	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-37930	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-52660	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-52704	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	201130	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	201207	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	201300	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.99684	0.0	denovo_WM_7:29:0.975
chr3	122074885	122075031	reg1009613.p1	5.420	+	NM_005213 AK291308 BC010379 X05978 CR456914	-30884	+	NM_001178065 U20760	-171778	+	NM_000388 U20759	-172429	+	BC019231 BC109378 TSC_hg19_v1_chr3_-_122102079 BC054051 BC062725 NM_001017928	27119	-	NM_014367 AK026030 BC010896 BC015060 AF201944 AF107495 AF250321 TSC_hg19_v1_chr3_+_122103076 AK293994 AF191020	28110	+	BC025762 NM_019069 TSC_hg19_v1_chr3_-_122134925	59959	-	NM_005213|CSTA|1475|cystatin A (stefin A)##AK291308|CSTA|1475|cystatin A (stefin A)##BC010379|CSTA|1475|cystatin A (stefin A)##X05978|CSTA|1475|cystatin A (stefin A)##CR456914|CSTA|1475|cystatin A (stefin A)##NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##BC109378|CCDC58|131076|coiled-coil domain containing 58##BC054051|CCDC58|131076|coiled-coil domain containing 58##BC062725|CCDC58|131076|coiled-coil domain containing 58##NM_001017928|CCDC58|131076|coiled-coil domain containing 58##NM_014367|FAM162A|26355|family with sequence similarity 162, member A##AK026030|FAM162A|26355|family with sequence similarity 162, member A##BC010896|FAM162A|26355|family with sequence similarity 162, member A##BC015060|FAM162A|26355|family with sequence similarity 162, member A##AF201944|FAM162A|26355|family with sequence similarity 162, member A##AF107495|FAM162A|26355|family with sequence similarity 162, member A##AF250321|FAM162A|26355|family with sequence similarity 162, member A##AK293994|FAM162A|26355|family with sequence similarity 162, member A##AF191020|FAM162A|26355|family with sequence similarity 162, member A##BC025762|WDR5B|54554|WD repeat domain 5B##NM_019069|WDR5B|54554|WD repeat domain 5B	0.99896	0.0	denovo_WM_7:31:0.314	denovo_WM_7:32:0.314	denovo_WM_7:33:0.314
chr1	213189190	213189333	reg1010251.p1	5.419	+	TSC_hg19_v1_chr1_-_213189125 AK294479 AK311276 AK299365 BC047469 AK295116 AF510741 AL079275 NM_144567	-134	-	TSC_hg19_v1_chr1_-_213188830 AK299208	-450	-	AK302675 TSC_hg19_v1_chr1_+_213124038	-65238	+	TSC_hg19_v1_chr1_+_213224631 AK122989 NM_001136138 NM_012424 AK299298 AF477978 AK122921 AK295053	35326	+	TSC_hg19_v1_chr1_+_213224692 BC104769 BC143449 BC143473 BC143474	35416	+	TSC_hg19_v1_chr1_+_213224716 AB070706 EF491805	35499	+	AK294479|ANGEL2|90806|angel homolog 2 (Drosophila)##AK311276|ANGEL2|90806|angel homolog 2 (Drosophila)##AK299365|ANGEL2|90806|angel homolog 2 (Drosophila)##BC047469|ANGEL2|90806|angel homolog 2 (Drosophila)##AK295116|ANGEL2|90806|angel homolog 2 (Drosophila)##AF510741|ANGEL2|90806|angel homolog 2 (Drosophila)##AL079275|ANGEL2|90806|angel homolog 2 (Drosophila)##NM_144567|ANGEL2|90806|angel homolog 2 (Drosophila)##AK299208|ANGEL2|90806|angel homolog 2 (Drosophila)##AK302675|VASH2|79805|vasohibin 2##AK122989|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##NM_001136138|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##NM_012424|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK299298|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AF477978|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK122921|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AK295053|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC104769|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143449|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143473|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##BC143474|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1##AB070706|RPS6KC1|26750|ribosomal protein S6 kinase, 52kDa, polypeptide 1	2.003738	0.0	denovo_WM_7:70:0.383	denovo_WM_7:97:0.714
chr2	78521075	78521186	reg1006497.p1	5.419	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	-771712	-	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-2583079	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-2583411	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	731708	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	794003	-	AK307292 NM_002909 TSC_hg19_v1_chr2_+_79347583	826406	+	BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta##AK307292|REG1A|5967|regenerating islet-derived 1 alpha##NM_002909|REG1A|5967|regenerating islet-derived 1 alpha	0.0	0.0	
chr6	151134435	151134561	reg1008158.p1	5.419	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-213478	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-444340	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-670257	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	52334	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	52423	+	TSC_hg19_v1_chr6_+_151187064 AL117452	52603	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.993008	0.0	denovo_WM_7:-49:0.946
chr7	92452686	92452866	reg1009360.p2	5.419	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-233078	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-233134	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-294670	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	9991	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	10444	-	AK313491 TSC_hg19_v1_chr7_-_92465884	13122	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	1.976171	0.0	denovo_WM_7:3:0.960	denovo_WM_7:-11:0.963
chr11	62624985	62625149	reg1004469.p1	5.418	+	TSC_hg19_v1_chr11_+_62623580 NM_001012662 NM_001012664 NM_002394 BC001061 AK025584 BC003000	-1517	+	BC000839 BC027980 BC011809 BC017253 BC063571 TSC_hg19_v1_chr11_-_62623358 AK095849	-1782	-	AK001301 NM_018093	-17440	-	TSC_hg19_v1_chr11_+_62648367 NM_001013251 AK304685 AK090758 AX746603 J03569 AK304497 AB018010 J02939 AK225304 J02769 EU832612 EU832683	23440	+	TSC_hg19_v1_chr11_+_62649170 AK308797 AK311592 AF055031	24125	+	BC007740 AK312374 TSC_hg19_v1_chr11_-_62688827	63716	-	NM_001012662|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_001012664|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_002394|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC001061|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK025584|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC003000|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC000839|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC027980|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC011809|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC017253|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC063571|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK095849|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK001301|WDR74|54663|WD repeat domain 74##NM_018093|WDR74|54663|WD repeat domain 74##NM_001013251|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304685|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK090758|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J03569|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304497|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AB018010|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02939|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK225304|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02769|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832612|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832683|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK308797|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK311592|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AF055031|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC007740|CHRM1|1128|cholinergic receptor, muscarinic 1##AK312374|CHRM1|1128|cholinergic receptor, muscarinic 1	1.384254	0.0	denovo_WM_7:-63:0.981
chr12	15723771	15723951	reg1004486.p1	5.418	+	TSC_hg19_v1_chr12_+_15699551 AK290982	-24284	+	NM_030668 NM_030669 NM_030670 NM_030671 AF152378 AF187042 AF187043 AF187044	-24580	+	AK289784 TSC_hg19_v1_chr12_+_15475476 BC035960 U20489 BC126201 BC126203 Z48541 CU690232	-248310	+	TSC_hg19_v1_chr12_-_15815073 AK316134	91279	-	TSC_hg19_v1_chr12_-_15865848 AK292931	142003	-	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	218371	-	AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030668|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030669|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030670|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030671|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF152378|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187042|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187043|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AF187044|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK289784|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC035960|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U20489|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126201|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126203|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##Z48541|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8	0.0	0.02998	
chr4	72766238	72766355	reg1008804.p1	5.418	+	AK223458 NM_001204306	-95060	-	AK309595 NM_001204307	-96539	-	AB591002 CU691194 M12654 TSC_hg19_v1_chr4_-_72649797 AK290827 AK298433 AK312971 BC057228 BC022310 X03178 AK315853 NM_000583	-116390	-	AF119815 NM_004885 AK308069 AJ311393	131273	+	AK290937 NM_001144756 NM_053036 AF236083	138574	+	AB002364 AB385317 BC130287 BC132735 AF247668 NM_014243	668195	-	AK223458|GC|2638|group-specific component (vitamin D binding protein)##NM_001204306|GC|2638|group-specific component (vitamin D binding protein)##AK309595|GC|2638|group-specific component (vitamin D binding protein)##NM_001204307|GC|2638|group-specific component (vitamin D binding protein)##AK290827|GC|2638|group-specific component (vitamin D binding protein)##AK298433|GC|2638|group-specific component (vitamin D binding protein)##AK312971|GC|2638|group-specific component (vitamin D binding protein)##BC057228|GC|2638|group-specific component (vitamin D binding protein)##BC022310|GC|2638|group-specific component (vitamin D binding protein)##X03178|GC|2638|group-specific component (vitamin D binding protein)##AK315853|GC|2638|group-specific component (vitamin D binding protein)##NM_000583|GC|2638|group-specific component (vitamin D binding protein)##AF119815|NPFFR2|10886|neuropeptide FF receptor 2##NM_004885|NPFFR2|10886|neuropeptide FF receptor 2##AK308069|NPFFR2|10886|neuropeptide FF receptor 2##AJ311393|NPFFR2|10886|neuropeptide FF receptor 2##AK290937|NPFFR2|10886|neuropeptide FF receptor 2##NM_001144756|NPFFR2|10886|neuropeptide FF receptor 2##NM_053036|NPFFR2|10886|neuropeptide FF receptor 2##AF236083|NPFFR2|10886|neuropeptide FF receptor 2##AB002364|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC130287|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC132735|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##AF247668|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##NM_014243|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3	0.995449	0.0	denovo_WM_7:49:0.924
chr5	153691064	153691207	reg1009180.p1	5.418	+	TSC_hg19_v1_chr5_+_153570292 BC050333 NM_198321 AK127135 AB078145 AB527381 AJ505950 AK074132	-120777	+	TSC_hg19_v1_chr5_+_153418558 AK315573 BC026244	-272575	+	AK296468 NM_001135037 NM_001242336 NM_005927 TSC_hg19_v1_chr5_+_153418526	-272611	+	TSC_hg19_v1_chr5_-_153825380 BC042059 AK095428	134232	-	TSC_hg19_v1_chr5_+_153825535 AK021588 NM_001131062 NM_001131063 NM_024632	134384	+	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	134475	+	BC050333|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##NM_198321|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK127135|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AB078145|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AJ505950|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK074132|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK315573|MFAP3|4238|microfibrillar-associated protein 3##BC026244|MFAP3|4238|microfibrillar-associated protein 3##AK296468|MFAP3|4238|microfibrillar-associated protein 3##NM_001135037|MFAP3|4238|microfibrillar-associated protein 3##NM_001242336|MFAP3|4238|microfibrillar-associated protein 3##NM_005927|MFAP3|4238|microfibrillar-associated protein 3##BC042059|FLJ38109|386627|uncharacterized LOC386627##AK095428|FLJ38109|386627|uncharacterized LOC386627##AK021588|SAP30L|79685|SAP30-like##NM_001131062|SAP30L|79685|SAP30-like##NM_001131063|SAP30L|79685|SAP30-like##NM_024632|SAP30L|79685|SAP30-like##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like	0.99951	0.0	denovo_WM_7:46:0.425	denovo_WM_7:47:0.425
chr6	22453478	22453627	reg1008610.p1	5.418	+	X54394 X54393 GQ305133 M58594 NM_001163558	-150505	-	BC015850 NM_000948	-155823	-	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-786893	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	116173	+	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	1672878	+	AF181722 NM_181337	1903578	+	X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1	1.995108	0.0	denovo_WM_7:58:0.444	denovo_WM_7:59:0.296	denovo_WM_7:74:0.323	denovo_WM_7:75:0.471
chr6_cox_hap2	3624107	3624255	reg1010385.p2	5.418	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.008085	0.0	denovo_WM_7:-20:0.621	denovo_WM_7:-21:0.297
chr7	92442665	92442845	reg1005241.p1	5.418	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-223057	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-223113	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-284649	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	20012	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	20465	-	AK313491 TSC_hg19_v1_chr7_-_92465884	23143	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.0	0.0	
chr8	96142906	96143059	reg1001683.p1	5.418	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	-105678	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-181325	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-235530	-	TSC_hg19_v1_chr8_+_96145948 NM_024613	2963	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	3026	+	TSC_hg19_v1_chr8_+_96146116 AK023249	3154	+	NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	1.954833	0.0	denovo_WM_7:1:0.722	denovo_WM_7:16:0.254	denovo_WM_7:17:0.282	denovo_WM_7:18:0.392
chr2	226530199	226530313	reg1007396.p1	5.417	+	NM_020864 BC131727 AB040919	-264611	+	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	-622908	-	TSC_hg19_v1_chr2_-_225811768 EU236710	-718502	-	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	1133223	-	TSC_hg19_v1_chr2_-_227664534 S62539	1134243	-	NM_001167608 NM_032276 TSC_hg19_v1_chr2_+_227700769 BC030293 AX775823 BC111056 AK074258 AX775825	1170474	+	NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##EU236710|DOCK10|55619|dedicator of cytokinesis 10##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1##S62539|IRS1|3667|insulin receptor substrate 1##NM_001167608|RHBDD1|84236|rhomboid domain containing 1##NM_032276|RHBDD1|84236|rhomboid domain containing 1##BC111056|RHBDD1|84236|rhomboid domain containing 1##AK074258|RHBDD1|84236|rhomboid domain containing 1	0.236819	0.982438	CTCF.p2:4:0.982
chr22	39378331	39378458	reg1009504.p2	5.417	+	NM_001193289 NM_145699 U03891 BC126416 BC144146 CR456393 AB528063 CU012950 CU013238 HQ258100	-24784	+	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	-110090	-	TSC_hg19_v1_chr22_-_39268222 BC012111 AK293035	-110173	-	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	37	+	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	31857	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	31932	+	NM_001193289|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##NM_145699|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##U03891|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC126416|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC144146|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CR456393|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU012950|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU013238|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##HQ258100|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6##BC012111|CBX6|23466|chromobox homolog 6##AK293035|CBX6|23466|chromobox homolog 6##AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C	0.0	0.0	
chr12	111026507	111026595	reg1009458.p1	5.416	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-5425	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-5481	-	TSC_hg19_v1_chr12_-_111020755 AY357944	-5758	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	25374	+	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	100407	-	AK293543 NM_001040107	101048	-	AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1	0.973671	0.0	denovo_WM_7:-1:0.519
chr12	829199	829308	reg1001370.p2	5.416	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-56538	-	TSC_hg19_v1_chr12_-_752800 AK298043	-76434	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-77075	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	32903	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	33503	+	BC013629 TSC_hg19_v1_chr12_+_1017145	187829	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.016313	0.0	
chr12	94517798	94517912	reg1006002.p1	5.416	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-446672	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-552254	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-553035	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	24649	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	335676	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	335787	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	0.967521	0.0	denovo_WM_7:1:0.837
chr3	78936996	78937133	reg1006996.p1	5.416	+	TSC_hg19_v1_chr3_-_78666943 AK025535	-270079	-	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	-1847784	+	TSC_hg19_v1_chr3_-_75834698 AK123776	-3102362	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	131523	-	NM_002941	879994	-	TSC_hg19_v1_chr3_-_81810692 EU176342 L07956	2873633	-	AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##AK123776|ZNF717|100131827|zinc finger protein 717##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##EU176342|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##L07956|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1	0.996414	0.0	denovo_WM_7:38:0.487
chr1	27488178	27488246	reg1000766.p1	5.415	+	M96066 S68616 NM_003047 TSC_hg19_v1_chr1_-_27481521	-6751	-	TSC_hg19_v1_chr1_-_27339448 AK122816	-148758	-	BC012790 BC014160 NM_052943 TSC_hg19_v1_chr1_-_27339338	-148878	-	NM_015023 TSC_hg19_v1_chr1_+_27561056	72822	+	TSC_hg19_v1_chr1_+_27561124 AK315564	72915	+	TSC_hg19_v1_chr1_+_27561153 BC032523	72950	+	M96066|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##S68616|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##NM_003047|SLC9A1|6548|solute carrier family 9 (sodium/hydrogen exchanger), member 1##AK122816|FAM46B|115572|family with sequence similarity 46, member B##BC012790|FAM46B|115572|family with sequence similarity 46, member B##BC014160|FAM46B|115572|family with sequence similarity 46, member B##NM_052943|FAM46B|115572|family with sequence similarity 46, member B##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1	0.0	0.0	
chr1	68027443	68027537	reg1009486.p2	5.415	+	TSC_hg19_v1_chr1_-_67896101 NM_001018067 NM_001018068 NM_001018069 NM_015640	-131373	-	BX647139 TSC_hg19_v1_chr1_-_67896097	-131393	-	TSC_hg19_v1_chr1_-_67896086 AK312256	-131405	-	TSC_hg19_v1_chr1_+_68150883 AK314991 NM_001199741 NM_001199742 NM_001924 M60974 BC011757 DQ008445 EF581092 EF614238	123420	+	TSC_hg19_v1_chr1_+_68151094 AB463698 AM393439 DQ893229 DQ896558	123644	+	AK124028 TSC_hg19_v1_chr1_+_68297985 AK096081	270498	+	NM_001018067|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018068|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018069|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_015640|SERBP1|26135|SERPINE1 mRNA binding protein 1##BX647139|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK314991|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199741|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199742|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001924|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##M60974|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##BC011757|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ008445|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF581092|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF614238|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AM393439|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ893229|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ896558|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AK124028|LOC100289178|100289178|uncharacterized LOC100289178	0.011507	0.022996	
chr2	114510609	114510748	reg1008645.p1	5.415	+	TSC_hg19_v1_chr2_+_114384849 AK289496 AF095350 AF095351 BC126129 BC144050 BC144052	-125772	+	TSC_hg19_v1_chr2_+_114384811 BC111008 NM_007082 NM_013412	-125864	+	TSC_hg19_v1_chr2_-_114384648 BC000596 BC105600	-126030	-	AF529364 CU676258 TSC_hg19_v1_chr2_-_114514079 AY358620	3400	-	AK025657 AK315719 TSC_hg19_v1_chr2_-_114514220 BC050096 BC018537 NM_025181	3619	-	TSC_hg19_v1_chr2_+_114647549 BC044590 NM_005721 AF127773	136869	+	AK289496|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095350|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095351|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC126129|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144050|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144052|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC111008|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##NM_007082|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##NM_013412|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC000596|RPL23AP7|118433|ribosomal protein L23a pseudogene 7##BC105600|RPL23AP7|118433|ribosomal protein L23a pseudogene 7##AF529364|SLC35F5|80255|solute carrier family 35, member F5##AY358620|SLC35F5|80255|solute carrier family 35, member F5##AK025657|SLC35F5|80255|solute carrier family 35, member F5##AK315719|SLC35F5|80255|solute carrier family 35, member F5##BC050096|SLC35F5|80255|solute carrier family 35, member F5##BC018537|SLC35F5|80255|solute carrier family 35, member F5##NM_025181|SLC35F5|80255|solute carrier family 35, member F5##BC044590|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##NM_005721|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AF127773|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)	1.985521	0.0	denovo_WM_7:70:0.909	denovo_WM_7:85:0.316	denovo_WM_7:86:0.327	denovo_WM_7:87:0.339
chr6	42358143	42358284	reg1009493.p2	5.415	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-172596	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-172613	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-172616	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	61610	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	173537	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	173564	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.99539	0.0	denovo_WM_7:-24:0.637	denovo_WM_7:-25:0.308
chr1	17003471	17003597	reg1006223.p1	5.414	+	AK123337 TSC_hg19_v1_chr1_-_16971178	-32357	-	TSC_hg19_v1_chr1_-_16971175 AK090414	-32368	-	TSC_hg19_v1_chr1_-_16940046 AK123260 AY894575 NM_017940 BC066930 BC010124 BC082236 BC110431 AK055895 BC093404	-63638	-	TSC_hg19_v1_chr1_+_17248425 NM_014675	244900	+	TSC_hg19_v1_chr1_-_17307116 BC028033 AK222751 BC015039 NM_001135248 NM_002403	303615	-	AK301655 NM_001135247 NM_017459	304542	-	AK123337|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK090414|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK123260|NBPF1|55672|neuroblastoma breakpoint family, member 1##AY894575|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_017940|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC066930|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC010124|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC110431|NBPF1|55672|neuroblastoma breakpoint family, member 1##AK055895|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC093404|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_014675|CROCC|9696|ciliary rootlet coiled-coil, rootletin##BC028033|MFAP2|4237|microfibrillar-associated protein 2##AK222751|MFAP2|4237|microfibrillar-associated protein 2##BC015039|MFAP2|4237|microfibrillar-associated protein 2##NM_001135248|MFAP2|4237|microfibrillar-associated protein 2##NM_002403|MFAP2|4237|microfibrillar-associated protein 2##AK301655|MFAP2|4237|microfibrillar-associated protein 2##NM_001135247|MFAP2|4237|microfibrillar-associated protein 2##NM_017459|MFAP2|4237|microfibrillar-associated protein 2	0.328551	0.0	denovo_WM_7:38:0.329
chr20	51590597	51590777	reg1008394.p2	5.414	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-909	+	BX640770 NM_173485	-1742	+	BC012759 BC041622 NM_018197 NM_022088 NM_199426 NM_199427	-782164	-	AK302570 NM_001193421	211134	+	AF041259 NM_006526	608948	-	TSC_hg19_v1_chr20_-_52210810 AK290350	620112	-	AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##BC012759|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC041622|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_018197|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_022088|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199426|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199427|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK290350|ZNF217|7764|zinc finger protein 217	0.948241	0.0	denovo_WM_7:-12:0.931
chr1	27748598	27748743	reg1007303.p1	5.413	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-16486	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-29504	+	BC137466 AY358761 NM_207397	-38878	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	67930	-	TSC_hg19_v1_chr1_-_27816670 BC012329	68001	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	68006	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	0.0	0.0	
chr16	8757235	8757359	reg1005580.p2	5.412	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	-41757	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	-1374547	+	AK001027 NM_001142334	-1933488	+	TSC_hg19_v1_chr16_+_8768473 NM_020686 BX537362 AK096146 BC031413 BC015628	11165	+	NM_000663 TSC_hg19_v1_chr16_+_8806841 BC013965	49538	+	TSC_hg19_v1_chr16_+_8807190 AK054834	49905	+	NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22##AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_020686|ABAT|18|4-aminobutyrate aminotransferase##BX537362|ABAT|18|4-aminobutyrate aminotransferase##AK096146|ABAT|18|4-aminobutyrate aminotransferase##BC031413|ABAT|18|4-aminobutyrate aminotransferase##BC015628|ABAT|18|4-aminobutyrate aminotransferase##NM_000663|ABAT|18|4-aminobutyrate aminotransferase##BC013965|ABAT|18|4-aminobutyrate aminotransferase##AK054834|ABAT|18|4-aminobutyrate aminotransferase	0.015178	0.0	
chr22	42835005	42835165	reg1006361.p1	5.412	+	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	-6704	-	BC038245 TSC_hg19_v1_chr22_-_42765218	-69883	-	AB527391 NM_005650 NM_181492	-223708	-	BC031838 TSC_hg19_v1_chr22_-_42915796 BC041639 BC042335 AB527998 AK314650	80682	-	TSC_hg19_v1_chr22_-_42915803 BC073834 BC064560 BC035992 BC121118 BC121119 NM_015703	80729	-	BC041802 AK294584 AL450314 NM_014509 AK295223 BC119650 BC119651 BC127635 BC127636 CR456455 AL589866 AL590118 AL590120 CU013005 CU013293	114861	+	CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##BC031838|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC041639|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC042335|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK314650|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC073834|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC064560|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC035992|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121118|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121119|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##NM_015703|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK294584|SERHL2|253190|serine hydrolase-like 2##AL450314|SERHL2|253190|serine hydrolase-like 2##NM_014509|SERHL2|253190|serine hydrolase-like 2##AK295223|SERHL2|253190|serine hydrolase-like 2##BC119650|SERHL2|253190|serine hydrolase-like 2##BC119651|SERHL2|253190|serine hydrolase-like 2##BC127635|SERHL2|253190|serine hydrolase-like 2##BC127636|SERHL2|253190|serine hydrolase-like 2##CR456455|SERHL2|253190|serine hydrolase-like 2##AL589866|SERHL2|253190|serine hydrolase-like 2##AL590118|SERHL2|253190|serine hydrolase-like 2##AL590120|SERHL2|253190|serine hydrolase-like 2##CU013005|SERHL2|253190|serine hydrolase-like 2##CU013293|SERHL2|253190|serine hydrolase-like 2	0.994054	0.0	
chr14	34261657	34261837	reg1009686.p1	5.411	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-853257	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1463211	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1715241	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	158402	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	669740	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	747138	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	0.995916	0.0	
chr14	71136011	71136191	reg1001936.p2	5.411	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-27492	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-68724	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-68741	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	139708	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	238032	+	TSC_hg19_v1_chr14_+_71374441 BC140784	238350	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	0.833819	0.0	denovo_WM_7:70:0.323	denovo_WM_7:72:0.500
chr3	17089632	17089751	reg1006006.p2	5.410	+	BC036392 NM_015184	-115110	+	AB029015 NM_001144382	-163240	+	U65918 U66726 U66078 BC027595 NM_001351	-442725	-	AK310539 NM_001134381	651820	-	D86965 NM_014744	692707	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	694476	-	BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5	0.287046	0.0	
chr7	73482458	73482524	reg1000010.p2	5.410	+	BX538199 BC065566 AB208942 BX537939 BC050379 TSC_hg19_v1_chr7_+_73442502 AK094138 AK095990 AK122731 AK225659 AK092232 AX747420 BC035570 AM393341	-39990	+	TSC_hg19_v1_chr7_+_73442469 M36860 X52896	-40022	+	TSC_hg19_v1_chr7_+_73442462 AK125511 AK130894	-40035	+	AK290162 NM_002314 TSC_hg19_v1_chr7_+_73498133	15635	+	TSC_hg19_v1_chr7_+_73498160 D26309	15664	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	15843	+	BX538199|ELN|2006|elastin##BC065566|ELN|2006|elastin##AB208942|ELN|2006|elastin##BX537939|ELN|2006|elastin##BC050379|ELN|2006|elastin##AK094138|ELN|2006|elastin##AK095990|ELN|2006|elastin##AK122731|ELN|2006|elastin##AK225659|ELN|2006|elastin##AK092232|ELN|2006|elastin##BC035570|ELN|2006|elastin##AM393341|ELN|2006|elastin##M36860|ELN|2006|elastin##X52896|ELN|2006|elastin##AK125511|ELN|2006|elastin##AK130894|ELN|2006|elastin##AK290162|LIMK1|3984|LIM domain kinase 1##NM_002314|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1	0.0	0.214438	
chr15	67376294	67376437	reg1008073.p1	5.409	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-17964	+	TSC_hg19_v1_chr15_+_67358179 AK290881	-18190	+	NM_001142861 U59914	-375436	+	NM_001145102 AK316017	41758	+	AK298139 NM_001145103	53993	+	NM_001145104 AK300614 AK301348	82131	+	NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##AK290881|SMAD3|4088|SMAD family member 3##NM_001142861|SMAD6|4091|SMAD family member 6##U59914|SMAD6|4091|SMAD family member 6##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3	1.983568	0.0	denovo_WM_7:36:0.400	denovo_WM_7:40:0.244	denovo_WM_7:58:0.214	denovo_WM_7:59:0.238
chr14	72022756	72022897	reg1009300.p1	5.408	+	AF090989 AF090990 NM_015556	-26785	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-648375	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-648693	+	AK294895 NM_001204423	375990	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	376327	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	377040	+	AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6	0.0	0.0	
chr8	11626890	11627022	reg1008677.p1	5.408	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	-65236	+	S76617 NM_001715 BC018703 BC004473 BC038555	-275363	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-302727	-	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	312	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	33228	+	TSC_hg19_v1_chr8_+_11660249 AK296043 AK315993 AK311246 X69141 AK301617	33282	+	NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK296043|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK315993|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK311246|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##X69141|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK301617|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.0	0.0	
chr10	25236449	25236612	reg1009843.p2	5.407	+	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	-223924	-	AK307604 TSC_hg19_v1_chr10_-_25012174	-224357	-	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-481061	+	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	5002	-	CU693144 DQ892076 DQ895269 BC064597 AK095021 NM_145010 AY454125 AK292495 BC026165	68444	-	NM_024838 TSC_hg19_v1_chr10_+_25305540 AK125249 BC035132 BX647989	69020	+	AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##DQ892076|ENKUR|219670|enkurin, TRPC channel interacting protein##DQ895269|ENKUR|219670|enkurin, TRPC channel interacting protein##AK095021|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_145010|ENKUR|219670|enkurin, TRPC channel interacting protein##AY454125|ENKUR|219670|enkurin, TRPC channel interacting protein##AK292495|ENKUR|219670|enkurin, TRPC channel interacting protein##BC026165|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_024838|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##AK125249|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BC035132|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BX647989|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)	0.0	0.0	
chr10	60828542	60828672	reg1009571.p1	5.407	+	TSC_hg19_v1_chr10_+_60272869 NM_001080512 AY726586	-555695	+	BC029815 TSC_hg19_v1_chr10_+_60145169 AK312558 M62810 NM_003201 BC018628 BC104482 BC126366 EU279428 HQ258758 AB451241 AB451366 AB464302 BT019658 BT019659 CR407653	-683402	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	-733771	+	TSC_hg19_v1_chr10_-_60936189 AK055418	107599	-	AL834339 NM_032439 TSC_hg19_v1_chr10_+_60936408 CR749429	107781	+	BC011268 AK054956 TSC_hg19_v1_chr10_+_60936573 AB384640 AM392743	107953	+	NM_001080512|BICC1|80114|bicaudal C homolog 1 (Drosophila)##AY726586|BICC1|80114|bicaudal C homolog 1 (Drosophila)##BC029815|TFAM|7019|transcription factor A, mitochondrial##AK312558|TFAM|7019|transcription factor A, mitochondrial##M62810|TFAM|7019|transcription factor A, mitochondrial##NM_003201|TFAM|7019|transcription factor A, mitochondrial##BC018628|TFAM|7019|transcription factor A, mitochondrial##BC104482|TFAM|7019|transcription factor A, mitochondrial##BC126366|TFAM|7019|transcription factor A, mitochondrial##EU279428|TFAM|7019|transcription factor A, mitochondrial##HQ258758|TFAM|7019|transcription factor A, mitochondrial##AB451241|TFAM|7019|transcription factor A, mitochondrial##AB451366|TFAM|7019|transcription factor A, mitochondrial##BT019658|TFAM|7019|transcription factor A, mitochondrial##BT019659|TFAM|7019|transcription factor A, mitochondrial##CR407653|TFAM|7019|transcription factor A, mitochondrial##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AL834339|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##NM_032439|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##CR749429|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##BC011268|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AK054956|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AM392743|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like	0.10258	0.0	
chr14	53327770	53327865	reg1006654.p1	5.407	+	TSC_hg19_v1_chr14_-_53258376 NM_198066	-69432	-	TSC_hg19_v1_chr14_-_53258326 BC012179 AK090577	-69581	-	TSC_hg19_v1_chr14_+_53196923 BX647636 BC020265 BC146995 BC146998	-130860	+	TSC_hg19_v1_chr14_-_53417272 EU979385 CU675940 EU831994 EU832087	89462	-	Z24725 AF443279 TSC_hg19_v1_chr14_-_53417769 BX161467 AK291738	89903	-	TSC_hg19_v1_chr14_-_53417903 BC017327 NM_001134999 NM_001135000 NM_006832	90050	-	NM_198066|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##BC012179|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##AK090577|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##BX647636|STYX|6815|serine/threonine/tyrosine interacting protein##BC020265|STYX|6815|serine/threonine/tyrosine interacting protein##BC146995|STYX|6815|serine/threonine/tyrosine interacting protein##BC146998|STYX|6815|serine/threonine/tyrosine interacting protein##EU979385|FERMT2|10979|fermitin family member 2##EU831994|FERMT2|10979|fermitin family member 2##EU832087|FERMT2|10979|fermitin family member 2##Z24725|FERMT2|10979|fermitin family member 2##AF443279|FERMT2|10979|fermitin family member 2##BX161467|FERMT2|10979|fermitin family member 2##AK291738|FERMT2|10979|fermitin family member 2##BC017327|FERMT2|10979|fermitin family member 2##NM_001134999|FERMT2|10979|fermitin family member 2##NM_001135000|FERMT2|10979|fermitin family member 2##NM_006832|FERMT2|10979|fermitin family member 2	0.958778	0.011076	denovo_WM_7:-20:0.819
chr17	30253486	30253641	reg1007460.p1	5.407	+	TSC_hg19_v1_chr17_-_30228769 AK299806	-24799	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	-24832	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	-24897	-	TSC_hg19_v1_chr17_+_30264046 NM_015355	10480	+	TSC_hg19_v1_chr17_+_30264057 AK290014	10494	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	10512	+	AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)	1.341577	0.0	denovo_WM_7:50:0.269	denovo_WM_7:65:0.330
chr22	50330122	50330302	reg1008942.p2	5.407	+	TSC_hg19_v1_chr22_+_50312337 BC050675 DQ470678 AK225930 AY358355 BC002894 DQ470676 DQ470677 DQ470680 AJ968414	-17837	+	TSC_hg19_v1_chr22_+_50312328 DQ470679 NM_001135101 NM_024324 AK308692 AK308535	-17908	+	TSC_hg19_v1_chr22_-_50312107 NM_024105	-18105	-	TSC_hg19_v1_chr22_+_50354140 NM_001001852 AB114795	23937	+	TSC_hg19_v1_chr22_+_50354433 AK292005 BC141855 BC052239 AB528933 BC140030	24299	+	NM_001001694 AK123987	120858	-	BC050675|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470678|CRELD2|79174|cysteine-rich with EGF-like domains 2##AK225930|CRELD2|79174|cysteine-rich with EGF-like domains 2##AY358355|CRELD2|79174|cysteine-rich with EGF-like domains 2##BC002894|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470676|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470677|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470680|CRELD2|79174|cysteine-rich with EGF-like domains 2##AJ968414|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470679|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_001135101|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_024324|CRELD2|79174|cysteine-rich with EGF-like domains 2##AK308535|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_024105|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##NM_001001852|PIM3|415116|pim-3 oncogene##AB114795|PIM3|415116|pim-3 oncogene##AK292005|PIM3|415116|pim-3 oncogene##BC141855|PIM3|415116|pim-3 oncogene##BC052239|PIM3|415116|pim-3 oncogene##BC140030|PIM3|415116|pim-3 oncogene##NM_001001694|IL17REL|400935|interleukin 17 receptor E-like##AK123987|IL17REL|400935|interleukin 17 receptor E-like	0.994213	0.0	
chr5	94129096	94129218	reg1008488.p2	5.407	+	BC070332 AK299080 AK297452 CR936768 AL050298 NM_032290 BC054885 BC107571	-174784	+	TSC_hg19_v1_chr5_-_93954299 BX648338 BC035515 AK308195 NM_001145678 NM_173665	-174900	-	TSC_hg19_v1_chr5_-_93447341 AL136630 AK312930 AK295879 AK296683 AK296986 AK295127 NM_001163417 NM_001163418 NM_032042	-681837	-	AK025997 TSC_hg19_v1_chr5_-_94224607	95449	-	AY656716 AK058012 BC030005 AK057694 TSC_hg19_v1_chr5_-_94417350	288111	-	NM_001002796	288387	-	BC070332|ANKRD32|84250|ankyrin repeat domain 32##AK299080|ANKRD32|84250|ankyrin repeat domain 32##AK297452|ANKRD32|84250|ankyrin repeat domain 32##CR936768|ANKRD32|84250|ankyrin repeat domain 32##AL050298|ANKRD32|84250|ankyrin repeat domain 32##NM_032290|ANKRD32|84250|ankyrin repeat domain 32##BC054885|ANKRD32|84250|ankyrin repeat domain 32##BC107571|ANKRD32|84250|ankyrin repeat domain 32##BX648338|KIAA0825|285600|KIAA0825##BC035515|KIAA0825|285600|KIAA0825##AK308195|KIAA0825|285600|KIAA0825##NM_001145678|KIAA0825|285600|KIAA0825##NM_173665|KIAA0825|285600|KIAA0825##AL136630|FAM172A|83989|family with sequence similarity 172, member A##AK312930|FAM172A|83989|family with sequence similarity 172, member A##AK295879|FAM172A|83989|family with sequence similarity 172, member A##AK296683|FAM172A|83989|family with sequence similarity 172, member A##AK296986|FAM172A|83989|family with sequence similarity 172, member A##AK295127|FAM172A|83989|family with sequence similarity 172, member A##NM_001163417|FAM172A|83989|family with sequence similarity 172, member A##NM_001163418|FAM172A|83989|family with sequence similarity 172, member A##NM_032042|FAM172A|83989|family with sequence similarity 172, member A##AK025997|MCTP1|79772|multiple C2 domains, transmembrane 1##AY656716|MCTP1|79772|multiple C2 domains, transmembrane 1##AK058012|MCTP1|79772|multiple C2 domains, transmembrane 1##BC030005|MCTP1|79772|multiple C2 domains, transmembrane 1##AK057694|MCTP1|79772|multiple C2 domains, transmembrane 1##NM_001002796|MCTP1|79772|multiple C2 domains, transmembrane 1	0.0	0.0	
chr10	73974002	73974130	reg1008268.p1	5.406	+	D87465 TSC_hg19_v1_chr10_-_73848773 NM_001134434 NM_014767	-125289	-	BC023558 NM_001244950	-125536	-	TSC_hg19_v1_chr10_-_73848310 AJ001453	-125726	-	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	1698	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	1722	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	2045	-	D87465|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_001134434|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_014767|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##BC023558|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_001244950|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1	1.06892	0.0	
chr10	7914286	7914368	reg1000157.p2	5.406	+	AJ292190 NM_031923 AL117661	-53619	+	TSC_hg19_v1_chr10_+_7860467 BC105593 BC073884 BC017320 BC045106 AK307657 AK307521 BC062352 BC028077	-53851	+	TSC_hg19_v1_chr10_+_7830141 NM_001001973 NM_005174 BC000931 BC020824 AK292896 AK296803 D16562 D16563 BC016812 AK294061 BC010380 BC000470 BC013394 BC013865 CU677727 CR457403 BC026049	-84187	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	182322	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	182448	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	183156	+	AJ292190|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##NM_031923|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AL117661|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC105593|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC073884|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC017320|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC045106|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AK307657|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AK307521|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC062352|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC028077|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##NM_001001973|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##NM_005174|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC000931|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC020824|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK292896|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK296803|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##D16562|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##D16563|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC016812|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK294061|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC010380|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC000470|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC013394|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC013865|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##CR457403|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC026049|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3	0.0	0.0	
chr17	70509392	70509549	reg1007365.p1	5.406	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-392230	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-392300	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-392311	+	AK000477 TSC_hg19_v1_chr17_-_70588944	79473	-	AF331643 TSC_hg19_v1_chr17_-_71088816	579346	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	579353	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.979666	0.014281	denovo_WM_7:71:0.486	denovo_WM_7:73:0.426
chr1	47079532	47079676	reg1009624.p1	5.405	+	TSC_hg19_v1_chr1_-_47069936 AK298839 AK310566 NM_001135553 NM_003684 NM_198973	-9654	-	TSC_hg19_v1_chr1_-_47069924 AK290456	-9676	-	BC002755 AB000409 AK096423 TSC_hg19_v1_chr1_-_47069922	-9700	-	BC121169 BC026078 NM_145279	1194	-	TSC_hg19_v1_chr1_-_47082508 AK304005	2908	-	TSC_hg19_v1_chr1_-_47082556 NM_201403	2941	-	AK298839|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##AK310566|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##NM_001135553|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##NM_003684|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##NM_198973|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##AK290456|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##BC002755|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##AB000409|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##AK096423|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##BC121169|MOB3C|148932|MOB kinase activator 3C##BC026078|MOB3C|148932|MOB kinase activator 3C##NM_145279|MOB3C|148932|MOB kinase activator 3C##AK304005|MKNK1|8569|MAP kinase interacting serine/threonine kinase 1##NM_201403|MOB3C|148932|MOB kinase activator 3C	0.110449	0.0	
chr16	31006187	31006334	reg1002221.p3	5.405	+	TSC_hg19_v1_chr16_+_30996538 NM_001142777 NM_001142778 NM_025193 AK057436 BC004929 AK290950 AK292068	-9731	+	TSC_hg19_v1_chr16_+_30969464 BC108673	-36723	+	AB002337 NM_014712	-37646	+	AB527655 AY995211 BC062298 AY028792 NM_052874 TSC_hg19_v1_chr16_-_31021950	15589	-	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	38156	+	TSC_hg19_v1_chr16_+_31044856 AK315716	38595	+	NM_001142777|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_001142778|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_025193|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK057436|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##BC004929|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK290950|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK292068|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AB002337|SETD1A|9739|SET domain containing 1A##NM_014712|SETD1A|9739|SET domain containing 1A##AY995211|STX1B|112755|syntaxin 1B##BC062298|STX1B|112755|syntaxin 1B##AY028792|STX1B|112755|syntaxin 1B##NM_052874|STX1B|112755|syntaxin 1B##AK091833|STX4|6810|syntaxin 4##AK315716|STX4|6810|syntaxin 4	0.993785	0.0	
chr18	12839575	12839703	reg1001193.p2	5.405	+	TSC_hg19_v1_chr18_+_12703040 NM_020232 AK225882 AF168712 AK057005 BC013356 CU680576	-136603	+	TSC_hg19_v1_chr18_-_12702776 AK298223	-136875	-	TSC_hg19_v1_chr18_-_12702689 AK022604 BC033026 AL833727 BC026307 NM_024899 AK303117	-136964	-	CU678897 AB590517 BC008244 TSC_hg19_v1_chr18_-_12884237 M25393 AK225706 AK290649 AK292570 BC016727 NM_001207013 NM_002828 NM_080422 NM_080423	44597	-	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	108346	+	TSC_hg19_v1_chr18_+_12948009 AK314403	108367	+	NM_020232|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK225882|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF168712|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK057005|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##BC013356|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK298223|CEP76|79959|centrosomal protein 76kDa##AK022604|CEP76|79959|centrosomal protein 76kDa##BC033026|CEP76|79959|centrosomal protein 76kDa##AL833727|CEP76|79959|centrosomal protein 76kDa##BC026307|CEP76|79959|centrosomal protein 76kDa##NM_024899|CEP76|79959|centrosomal protein 76kDa##AK303117|CEP76|79959|centrosomal protein 76kDa##BC008244|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##M25393|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK225706|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK290649|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##AK292570|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##BC016727|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001207013|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_002828|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080422|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_080423|PTPN2|5771|protein tyrosine phosphatase, non-receptor type 2##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)	0.0	0.0	
chr5	35229912	35230035	reg1007008.p1	5.405	+	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	-111750	-	NM_031900	-181734	-	TSC_hg19_v1_chr5_+_34929697 AY177688 AY258422 BC065745 NM_001012339 NM_194283	-300281	+	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	604	-	NM_000949	849	-	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	388036	+	NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##NM_031900|AGXT2|64902|alanine--glyoxylate aminotransferase 2##AY177688|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##AY258422|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##BC065745|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_001012339|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_194283|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##NM_000949|PRLR|5618|prolactin receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2	0.955543	0.0	denovo_WM_7:-10:0.583
chr8	56680627	56680761	reg1011539.p1	5.405	+	BC106028 AY534241 NM_052898	-665680	+	AF141021 NM_006269 DQ980612 DQ980613 DQ980614 AF143222 AF146592 DQ980615	-1152042	+	AK025905 NM_022454 TSC_hg19_v1_chr8_+_55370494 BC030209 BC111770 BC111365	-1310178	+	AF286340 NM_024831	5051	+	AK308247 AK056932 NM_152417 BC020835 BC071636	5203	-	TSC_hg19_v1_chr8_+_56686028 AY028423 AK314693 BX648548 AF432215	5326	+	AY534241|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4##NM_052898|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4##AF141021|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##NM_006269|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980612|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980613|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980614|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF143222|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF146592|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980615|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AK025905|SOX17|64321|SRY (sex determining region Y)-box 17##NM_022454|SOX17|64321|SRY (sex determining region Y)-box 17##BC030209|SOX17|64321|SRY (sex determining region Y)-box 17##BC111770|SOX17|64321|SRY (sex determining region Y)-box 17##BC111365|SOX17|64321|SRY (sex determining region Y)-box 17##AF286340|TGS1|96764|trimethylguanosine synthase 1##NM_024831|TGS1|96764|trimethylguanosine synthase 1##AK308247|TMEM68|137695|transmembrane protein 68##AK056932|TMEM68|137695|transmembrane protein 68##NM_152417|TMEM68|137695|transmembrane protein 68##BC020835|TMEM68|137695|transmembrane protein 68##BC071636|TMEM68|137695|transmembrane protein 68##AY028423|TGS1|96764|trimethylguanosine synthase 1##AK314693|TGS1|96764|trimethylguanosine synthase 1##BX648548|TGS1|96764|trimethylguanosine synthase 1##AF432215|TGS1|96764|trimethylguanosine synthase 1	0.99962	0.0	denovo_WM_7:16:0.457	denovo_WM_7:17:0.457
chr9	80432887	80433050	reg1008241.p2	5.405	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-169737	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-464620	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-640460	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	213216	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	418062	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	479090	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	1.830104	0.0	denovo_WM_7:-18:0.233	denovo_WM_7:-23:0.260	denovo_WM_7:-46:0.848
chr1	176146883	176147063	reg1008847.p2	5.404	+	AK295823 TSC_hg19_v1_chr1_-_175712727 NM_003285	-434263	-	D25539 BC032361 BC111699 BC050374 BC008952 BC020789 AL049799 AK292691 NM_001162895 NM_014656 AL049800 NM_001162893 NM_001162894	-984943	-	AK127044 NM_022093	-1109980	+	AF508940 AY509921 TSC_hg19_v1_chr1_-_176176215	29192	-	TSC_hg19_v1_chr1_-_176176313 BC020845 AK314750	29345	-	TSC_hg19_v1_chr1_-_176176372 BC094728 NM_001001740 NM_022457	29396	-	AK295823|TNR|7143|tenascin R (restrictin, janusin)##NM_003285|TNR|7143|tenascin R (restrictin, janusin)##D25539|KIAA0040|9674|KIAA0040##BC032361|KIAA0040|9674|KIAA0040##BC111699|KIAA0040|9674|KIAA0040##BC050374|KIAA0040|9674|KIAA0040##BC020789|KIAA0040|9674|KIAA0040##AL049799|KIAA0040|9674|KIAA0040##AK292691|KIAA0040|9674|KIAA0040##NM_001162895|KIAA0040|9674|KIAA0040##NM_014656|KIAA0040|9674|KIAA0040##AL049800|KIAA0040|9674|KIAA0040##NM_001162893|KIAA0040|9674|KIAA0040##NM_001162894|KIAA0040|9674|KIAA0040##AK127044|TNN|63923|tenascin N##NM_022093|TNN|63923|tenascin N##AF508940|RFWD2|64326|ring finger and WD repeat domain 2##AY509921|RFWD2|64326|ring finger and WD repeat domain 2##BC020845|RFWD2|64326|ring finger and WD repeat domain 2##AK314750|RFWD2|64326|ring finger and WD repeat domain 2##BC094728|RFWD2|64326|ring finger and WD repeat domain 2##NM_001001740|RFWD2|64326|ring finger and WD repeat domain 2##NM_022457|RFWD2|64326|ring finger and WD repeat domain 2	0.851515	0.0	denovo_WM_7:-42:0.574
chr14	96177783	96177911	reg1008199.p1	5.404	+	BC051000 NM_004918 AF137027 AB018563 AF110466 BC041616 AB590931 CR457087	-25069	+	TSC_hg19_v1_chr14_+_96001402 DQ083331	-176414	+	AB223038 TSC_hg19_v1_chr14_+_96001383	-176464	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	2620	-	AK023027 TSC_hg19_v1_chr14_+_96342762	164898	+	TSC_hg19_v1_chr14_+_96505698 NM_001252507 BC043593 AB621830 AK001590	327799	+	BC051000|TCL1B|9623|T-cell leukemia/lymphoma 1B##NM_004918|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF137027|TCL1B|9623|T-cell leukemia/lymphoma 1B##AB018563|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF110466|TCL1B|9623|T-cell leukemia/lymphoma 1B##BC041616|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR457087|TCL1B|9623|T-cell leukemia/lymphoma 1B##DQ083331|GLRX5|51218|glutaredoxin 5##AB223038|GLRX5|51218|glutaredoxin 5##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##AK023027|LOC100507043|100507043|uncharacterized LOC100507043##NM_001252507|C14orf132|56967|chromosome 14 open reading frame 132##BC043593|C14orf132|56967|chromosome 14 open reading frame 132##AB621830|C14orf132|56967|chromosome 14 open reading frame 132##AK001590|C14orf132|56967|chromosome 14 open reading frame 132	0.99535	0.0	denovo_WM_7:-34:0.982
chr15	44600699	44600834	reg1009294.p1	5.404	+	TSC_hg19_v1_chr15_+_44581110 AK298564 AL832333 AK291026 CU680228 CU687742	-19631	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	-19807	+	AK098265 TSC_hg19_v1_chr15_+_44580937	-19825	+	NM_016396	118812	+	TSC_hg19_v1_chr15_+_44719826 AK291230 AF161478 AF161543	119030	+	TSC_hg19_v1_chr15_+_44719836 BC018623 AK226094 DQ128104 BC035744	119144	+	AK298564|CASC4|113201|cancer susceptibility candidate 4##AL832333|CASC4|113201|cancer susceptibility candidate 4##AK291026|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##NM_016396|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK291230|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161478|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161543|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC018623|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK226094|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##DQ128104|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC035744|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	0.07273	0.0	
chr19	10212410	10212537	reg1000824.p1	5.404	+	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-15411	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-15476	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	-15687	+	AY358276 BC142632 AB054064 NM_031917 AF230330	927	-	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	4516	+	NM_002566 BC073827	9731	+	AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66##AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11	0.998462	0.0	
chr7	65703350	65703446	reg1007375.p1	5.403	+	TSC_hg19_v1_chr7_+_65670320 NM_003596 AK307053 AK313098	-33089	+	TSC_hg19_v1_chr7_+_65579866 BC040107 BX647867 U51134	-123496	+	TSC_hg19_v1_chr7_+_65579836 AK290553 AK311829 BC105808	-123563	+	TSC_hg19_v1_chr7_+_65958724 AY726579	255305	+	TSC_hg19_v1_chr7_-_66057374 BC080520 BC057835 BC067867 AK310548 BC103766 AK310370 AK296922	353963	-	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	390476	+	NM_003596|TPST1|8460|tyrosylprotein sulfotransferase 1##AK307053|TPST1|8460|tyrosylprotein sulfotransferase 1##AK313098|TPST1|8460|tyrosylprotein sulfotransferase 1##BC040107|CRCP|27297|CGRP receptor component##BX647867|CRCP|27297|CGRP receptor component##U51134|CRCP|27297|CGRP receptor component##AK290553|CRCP|27297|CGRP receptor component##AK311829|CRCP|27297|CGRP receptor component##BC105808|CRCP|27297|CGRP receptor component##AK310548|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##BC103766|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK310370|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK296922|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7	0.999894	0.0	denovo_WM_7:5:0.230	denovo_WM_7:6:0.230	denovo_WM_7:7:0.230	denovo_WM_7:8:0.230
chr10	112624607	112624787	reg1001840.p2	5.402	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-220568	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-280582	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-297205	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	6915	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	7017	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	53999	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	0.984387	0.0	denovo_WM_7:-14:0.374	denovo_WM_7:-16:0.582
chr3	19586083	19586197	reg1007610.p2	5.402	+	AK295633 AY053503 NM_144633 AB209053 AK309034	-396136	+	BC001744 NM_001131010	-1105907	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	-1119343	-	BC028198 AK097644 NM_144715	389548	-	TSC_hg19_v1_chr3_+_19988586 NM_004162	402549	+	TSC_hg19_v1_chr3_+_19988870 AK312618 BC018288 AK309287 AK295992 BC001267	402761	+	AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC028198|EFHB|151651|EF-hand domain family, member B##AK097644|EFHB|151651|EF-hand domain family, member B##NM_144715|EFHB|151651|EF-hand domain family, member B##NM_004162|RAB5A|5868|RAB5A, member RAS oncogene family##AK312618|RAB5A|5868|RAB5A, member RAS oncogene family##BC018288|RAB5A|5868|RAB5A, member RAS oncogene family##AK309287|RAB5A|5868|RAB5A, member RAS oncogene family##AK295992|RAB5A|5868|RAB5A, member RAS oncogene family##BC001267|RAB5A|5868|RAB5A, member RAS oncogene family	1.960187	0.0	denovo_WM_7:-2:0.942	denovo_WM_7:12:0.913
chr17	12976540	12976683	reg1007312.p1	5.401	+	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	-55255	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	-55292	-	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	-55335	-	AY358838 TSC_hg19_v1_chr17_-_13505228 AF105376 NM_006042 AK292047	528626	-	TSC_hg19_v1_chr17_-_13972756 AK123100	996151	-	NM_001303 TSC_hg19_v1_chr17_+_13972839 AK312718	996168	+	AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AY358838|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AF105376|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_006042|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AK292047|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_001303|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK312718|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	0.0	0.0	
chr1	206639366	206639510	reg1011281.p1	5.400	+	NM_001910 NM_148964 AJ250716 AJ250717 BC042537 TSC_hg19_v1_chr1_+_206317529 J05036 AK292057 CU692090 AK298069	-321907	+	AK122631 NM_001007544	-350792	-	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	-415077	+	NM_001193321 NM_001193322 NM_014002	4147	+	TSC_hg19_v1_chr1_+_206643818 AK093798 AK310737 AY660028	4368	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	4407	+	NM_001910|CTSE|1510|cathepsin E##NM_148964|CTSE|1510|cathepsin E##AJ250716|CTSE|1510|cathepsin E##AJ250717|CTSE|1510|cathepsin E##BC042537|CTSE|1510|cathepsin E##J05036|CTSE|1510|cathepsin E##AK292057|CTSE|1510|cathepsin E##AK298069|CTSE|1510|cathepsin E##AK122631|C1orf186|440712|chromosome 1 open reading frame 186##NM_001007544|C1orf186|440712|chromosome 1 open reading frame 186##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B##NM_001193321|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_001193322|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_014002|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK093798|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AK310737|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##AY660028|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon	0.13299	0.0	
chr15	31520275	31520414	reg1007802.p2	5.400	+	GQ502181 HM135791 NM_001252020	-66916	-	AF071787 BC033627 BC005892 BC017849 HM135790 BC058286 BC070356 NM_001252024 NM_001252030 NM_002420	-126427	-	AK000320 AB528758 AM392869 TSC_hg19_v1_chr15_-_31283808 BC094750 BC063296 NM_017762	-236577	-	NM_001243538	2705	-	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	98994	+	AJ430383 NM_130901	427197	-	GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF071787|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC033627|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC005892|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC017849|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135790|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC058286|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC070356|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252024|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252030|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_002420|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AK000320|MTMR10|54893|myotubularin related protein 10##AM392869|MTMR10|54893|myotubularin related protein 10##BC094750|MTMR10|54893|myotubularin related protein 10##BC063296|MTMR10|54893|myotubularin related protein 10##NM_017762|MTMR10|54893|myotubularin related protein 10##NM_001243538|LOC283710|283710|uncharacterized LOC283710##AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A	0.994755	0.0	
chr17	4002370	4002528	reg1010220.p1	5.400	+	AB462957 DQ893317 EU176809 Z69881 TSC_hg19_v1_chr17_-_3867744 AF068220 BC035729 AK292716 NM_005173 NM_174953 NM_174954 NM_174955 NM_174956 NM_174957 NM_174958	-134748	-	NM_002558	-182490	-	X83688 U45448 BC044657 BC027949 TSC_hg19_v1_chr17_-_3819762 AK310981 AK313264 AF020498	-182701	-	AB384472 TSC_hg19_v1_chr17_-_4046240	43766	-	TSC_hg19_v1_chr17_-_4046246 AB007859 BC151836 NM_015113	43803	-	TSC_hg19_v1_chr17_-_4046308 AK127482	43861	-	DQ893317|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##EU176809|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##Z69881|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AF068220|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##BC035729|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##AK292716|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_005173|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174953|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174954|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174955|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174956|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174957|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_174958|ATP2A3|489|ATPase, Ca++ transporting, ubiquitous##NM_002558|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##X83688|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##U45448|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC044657|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##BC027949|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AK313264|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AF020498|P2RX1|5023|purinergic receptor P2X, ligand-gated ion channel, 1##AB007859|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##BC151836|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##NM_015113|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##AK127482|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1	1.389424	0.0	denovo_WM_7:8:0.803	denovo_WM_7:-10:0.220
chr21	45357996	45358176	reg1008159.p1	5.400	+	AK300562 NM_001037553	-12808	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-72963	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-73026	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	74254	+	TSC_hg19_v1_chr21_+_45527202 AK314184	169116	+	TSC_hg19_v1_chr21_+_45527251 NM_005049	169142	+	AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##NM_005049|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.0	0.0	
chr4	153452742	153452862	reg1006431.p2	5.400	+	NM_001013415 AY008274	-149138	-	AF383178 AK001933 BC037320 AB209725 AB527140 TSC_hg19_v1_chr4_-_153273893 AK315142 BC059373 AK223449 AK299722 AF411972 AY033553 NM_018315	-178906	-	TSC_hg19_v1_chr4_-_152682144 AB019410 AK303461 AK222887 AK225241 AK312957 AF151033 AF026851 BC067838 BC130348 BC136547 NM_004564	-770661	-	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	3492	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	4631	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	148398	-	NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##AF383178|FBXW7|55294|F-box and WD repeat domain containing 7##AK001933|FBXW7|55294|F-box and WD repeat domain containing 7##BC037320|FBXW7|55294|F-box and WD repeat domain containing 7##AB209725|FBXW7|55294|F-box and WD repeat domain containing 7##AK315142|FBXW7|55294|F-box and WD repeat domain containing 7##BC059373|FBXW7|55294|F-box and WD repeat domain containing 7##AK223449|FBXW7|55294|F-box and WD repeat domain containing 7##AK299722|FBXW7|55294|F-box and WD repeat domain containing 7##AF411972|FBXW7|55294|F-box and WD repeat domain containing 7##AY033553|FBXW7|55294|F-box and WD repeat domain containing 7##NM_018315|FBXW7|55294|F-box and WD repeat domain containing 7##AB019410|PET112|5188|PET112 homolog (yeast)##AK303461|PET112|5188|PET112 homolog (yeast)##AK222887|PET112|5188|PET112 homolog (yeast)##AK225241|PET112|5188|PET112 homolog (yeast)##AK312957|PET112|5188|PET112 homolog (yeast)##AF151033|PET112|5188|PET112 homolog (yeast)##AF026851|PET112|5188|PET112 homolog (yeast)##BC067838|PET112|5188|PET112 homolog (yeast)##BC130348|PET112|5188|PET112 homolog (yeast)##BC136547|PET112|5188|PET112 homolog (yeast)##NM_004564|PET112|5188|PET112 homolog (yeast)##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154	0.997285	0.0	denovo_WM_7:-69:0.793
chr6	47637794	47637947	reg1008681.p1	5.400	+	AY140953 DQ315369 NM_153839	-13597	+	TSC_hg19_v1_chr6_+_47445937 AF146277 BC069444	-191954	+	TSC_hg19_v1_chr6_+_47445524 NM_012120	-192355	+	AK095395 NM_153838 DQ315370	28424	+	BC126194 BC126198 NM_181744 AY377391 AY288419 HQ258199	111918	+	BC136779 AK123835 AK299301 NM_001013732 NM_207499	398534	-	AY140953|GPR111|222611|G protein-coupled receptor 111##DQ315369|GPR111|222611|G protein-coupled receptor 111##NM_153839|GPR111|222611|G protein-coupled receptor 111##AF146277|CD2AP|23607|CD2-associated protein##BC069444|CD2AP|23607|CD2-associated protein##NM_012120|CD2AP|23607|CD2-associated protein##AK095395|GPR115|221393|G protein-coupled receptor 115##NM_153838|GPR115|221393|G protein-coupled receptor 115##DQ315370|GPR115|221393|G protein-coupled receptor 115##BC126194|OPN5|221391|opsin 5##BC126198|OPN5|221391|opsin 5##NM_181744|OPN5|221391|opsin 5##AY377391|OPN5|221391|opsin 5##AY288419|OPN5|221391|opsin 5##HQ258199|OPN5|221391|opsin 5##BC136779|C6orf138|442213|chromosome 6 open reading frame 138##AK123835|C6orf138|442213|chromosome 6 open reading frame 138##AK299301|C6orf138|442213|chromosome 6 open reading frame 138##NM_001013732|C6orf138|442213|chromosome 6 open reading frame 138##NM_207499|C6orf138|442213|chromosome 6 open reading frame 138	0.869211	0.0	denovo_WM_7:-1:0.214	denovo_WM_7:-2:0.337	denovo_WM_7:-3:0.319
chr9	88330687	88330803	reg1008813.p2	5.400	+	U12140 TSC_hg19_v1_chr9_+_87285349	-1045413	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-1045993	+	TSC_hg19_v1_chr9_+_87284681 AF410899 AF410900 AF410901	-1046049	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	26126	-	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	225329	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	225433	+	U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410899|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410900|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410901|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	0.0	0.0	
chr10	80838462	80838567	reg1004661.p2	5.399	+	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	-9726	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	-1044883	+	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	-1044958	+	TSC_hg19_v1_chr10_+_80899458 AK025812	60970	+	TSC_hg19_v1_chr10_+_81003207 AB033050	164616	+	AK299728 TSC_hg19_v1_chr10_+_81065901	227374	+	BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##AK025812|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AB033050|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK299728|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.980285	0.0	denovo_WM_7:-31:0.797
chr11	11887002	11887158	reg1008655.p2	5.399	+	TSC_hg19_v1_chr11_+_11863521 BC071559 AK027362 AK092290 AX747455	-23512	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	-23589	+	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	-24064	+	AY587550 DQ892906 DQ896157 AK295441 AK225156 TSC_hg19_v1_chr11_-_12030174 AB033421 AF177396 AK092979 AK098756 NM_001018057	143076	-	TSC_hg19_v1_chr11_-_12030604 AB034203	143494	-	TSC_hg19_v1_chr11_-_12030622 BC007660 NM_015881	143545	-	BC071559|USP47|55031|ubiquitin specific peptidase 47##AK027362|USP47|55031|ubiquitin specific peptidase 47##AK092290|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AY587550|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##DQ892906|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##DQ896157|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK295441|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK225156|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AB033421|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AF177396|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK092979|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK098756|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_001018057|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AB034203|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##BC007660|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_015881|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)	0.609825	0.0	denovo_WM_7:-36:0.553
chr15	30916522	30916631	reg1003278.p1	5.399	+	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	-230864	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	-801953	-	AK304758 TSC_hg19_v1_chr15_-_30114336	-802234	-	TSC_hg19_v1_chr15_+_30918372 BC071990	1810	+	BC105788 NM_001039841	2302	+	BC047882 NM_001146095 NM_001146094 NM_001146096 NM_014967 TSC_hg19_v1_chr15_+_31196088 BX647391 AK290987	279498	+	BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC047882|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146095|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146094|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146096|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_014967|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BX647391|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK290987|FAN1|22909|FANCD2/FANCI-associated nuclease 1	1.971328	0.0	denovo_WM_7:53:0.894	denovo_WM_7:68:0.883
chr15	66102258	66102391	reg1007767.p1	5.399	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-17731	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-17851	-	AF062922 NM_004727	-188055	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	59523	+	TSC_hg19_v1_chr15_-_66321664 AK054827	219369	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	443753	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	1.287343	0.0	denovo_WM_7:10:0.238
chr16	30819659	30819780	reg1010301.p2	5.399	+	TSC_hg19_v1_chr16_-_30798510 AB002324 NM_001080417	-21322	-	TSC_hg19_v1_chr16_-_30787317 AK057076	-32388	-	TSC_hg19_v1_chr16_+_30773642 AK297531 AK304521 AK027406 AK293710 BX640763 CR627431 AK291666 AK131310 AK294258 AF122819 AB014561 BC006133 BC011769 BC018647	-46077	+	BC010017 AJ223980 CU691314 TSC_hg19_v1_chr16_-_30905327	85582	-	TSC_hg19_v1_chr16_-_30905377 BC019071 NM_004765	85676	-	TSC_hg19_v1_chr16_-_30905474 BC058863	85817	-	AB002324|ZNF629|23361|zinc finger protein 629##NM_001080417|ZNF629|23361|zinc finger protein 629##AK297531|RNF40|9810|ring finger protein 40##AK304521|RNF40|9810|ring finger protein 40##AK027406|RNF40|9810|ring finger protein 40##AK293710|RNF40|9810|ring finger protein 40##BX640763|RNF40|9810|ring finger protein 40##CR627431|RNF40|9810|ring finger protein 40##AK291666|RNF40|9810|ring finger protein 40##AK131310|RNF40|9810|ring finger protein 40##AK294258|RNF40|9810|ring finger protein 40##AF122819|RNF40|9810|ring finger protein 40##AB014561|RNF40|9810|ring finger protein 40##BC006133|RNF40|9810|ring finger protein 40##BC011769|RNF40|9810|ring finger protein 40##BC018647|RNF40|9810|ring finger protein 40##AJ223980|BCL7C|9274|B-cell CLL/lymphoma 7C##BC019071|BCL7C|9274|B-cell CLL/lymphoma 7C##NM_004765|BCL7C|9274|B-cell CLL/lymphoma 7C##BC058863|BCL7C|9274|B-cell CLL/lymphoma 7C	0.999888	0.224017	CTCF.p2:-22:0.224
chr17	30559529	30559619	reg1007091.p1	5.399	+	TSC_hg19_v1_chr17_+_30469588 BC092401 BC068463 AY094972 BC125104 BC125105 AL136929 BC029029 AK294407 AB527368 AM393207 BC146694 AJ517412	-89935	+	TSC_hg19_v1_chr17_+_30469544 BC110895	-90029	+	TSC_hg19_v1_chr17_+_30469520 BC041114	-90052	+	AJ313480 BC100975 BC100976 BC100978 NM_138328 BC100977	33620	+	TSC_hg19_v1_chr17_-_30669193 AF052093 CU691078 BC054035 BC047325 BC026017 BC035715 AF305686 NM_022344	109633	-	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	117582	+	BC092401|RHOT1|55288|ras homolog gene family, member T1##BC068463|RHOT1|55288|ras homolog gene family, member T1##AY094972|RHOT1|55288|ras homolog gene family, member T1##BC125104|RHOT1|55288|ras homolog gene family, member T1##BC125105|RHOT1|55288|ras homolog gene family, member T1##AL136929|RHOT1|55288|ras homolog gene family, member T1##BC029029|RHOT1|55288|ras homolog gene family, member T1##AK294407|RHOT1|55288|ras homolog gene family, member T1##AM393207|RHOT1|55288|ras homolog gene family, member T1##BC146694|RHOT1|55288|ras homolog gene family, member T1##AJ517412|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1##BC041114|RHOT1|55288|ras homolog gene family, member T1##AJ313480|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100975|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100976|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100978|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##NM_138328|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100977|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##AF052093|C17orf75|64149|chromosome 17 open reading frame 75##BC054035|C17orf75|64149|chromosome 17 open reading frame 75##BC047325|C17orf75|64149|chromosome 17 open reading frame 75##BC026017|C17orf75|64149|chromosome 17 open reading frame 75##BC035715|C17orf75|64149|chromosome 17 open reading frame 75##AF305686|C17orf75|64149|chromosome 17 open reading frame 75##NM_022344|C17orf75|64149|chromosome 17 open reading frame 75##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207	1.978947	0.0	denovo_WM_7:44:0.933	denovo_WM_7:60:0.448	denovo_WM_7:61:0.468
chr2	102422724	102422857	reg1002972.p1	5.399	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-108438	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-331597	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-418801	-	TSC_hg19_v1_chr2_+_102508334 BC045694	85552	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	85742	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	185573	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.999297	0.0	
chr2	10522824	10523004	reg1001404.p2	5.399	+	AK000596 NM_134421	-79089	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-79865	+	BC093999 BC094001 NM_182626	-240935	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	65446	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	65538	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	307130	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	0.0	0.0	
chr2	26571486	26571633	reg1008220.p1	5.399	+	AK122995 AY358172 NM_153835	-1912	-	AB051511 TSC_hg19_v1_chr2_+_26569010 AB621826 BC021229 BC015430 CU676884	-2514	+	TSC_hg19_v1_chr2_+_26568975 NM_033505 AK095620	-2618	+	TSC_hg19_v1_chr2_+_26624787 AK057222 NM_145038 AK289953 AK307094	53238	+	AF107403 AF183186 AF183187 NM_004802 NM_194322 NM_194323	129350	-	AF183185 NM_194248	210006	-	AK122995|GPR113|165082|G protein-coupled receptor 113##AY358172|GPR113|165082|G protein-coupled receptor 113##NM_153835|GPR113|165082|G protein-coupled receptor 113##AB051511|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##BC021229|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##NM_033505|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AK095620|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AK057222|CCDC164|92749|coiled-coil domain containing 164##NM_145038|CCDC164|92749|coiled-coil domain containing 164##AK289953|CCDC164|92749|coiled-coil domain containing 164##AK307094|CCDC164|92749|coiled-coil domain containing 164##AF107403|OTOF|9381|otoferlin##AF183186|OTOF|9381|otoferlin##AF183187|OTOF|9381|otoferlin##NM_004802|OTOF|9381|otoferlin##NM_194322|OTOF|9381|otoferlin##NM_194323|OTOF|9381|otoferlin##AF183185|OTOF|9381|otoferlin##NM_194248|OTOF|9381|otoferlin	0.991904	0.0	denovo_WM_7:7:0.523	denovo_WM_7:8:0.203	denovo_WM_7:10:0.202
chr7	134855683	134855863	reg1003044.p1	5.399	+	TSC_hg19_v1_chr7_-_134855533 NM_001243749 NM_001243751 NM_001243754 NM_024033	-219	-	TSC_hg19_v1_chr7_-_134855449 AK026103 BC000168 BC050676 BC067350	-354	-	TSC_hg19_v1_chr7_-_134855252 NM_001243752	-506	-	AL136940 TSC_hg19_v1_chr7_-_134896200	40421	-	BC063394 AB527237 AM393209 CU677881 BC017246 TSC_hg19_v1_chr7_-_134896256	40480	-	TSC_hg19_v1_chr7_-_134896267 AF161534 AK022935	40489	-	NM_001243749|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243751|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243754|C7orf49|78996|chromosome 7 open reading frame 49##NM_024033|C7orf49|78996|chromosome 7 open reading frame 49##AK026103|C7orf49|78996|chromosome 7 open reading frame 49##BC000168|C7orf49|78996|chromosome 7 open reading frame 49##BC067350|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243752|C7orf49|78996|chromosome 7 open reading frame 49##AL136940|WDR91|29062|WD repeat domain 91##BC063394|WDR91|29062|WD repeat domain 91##AM393209|WDR91|29062|WD repeat domain 91##BC017246|WDR91|29062|WD repeat domain 91##AF161534|WDR91|29062|WD repeat domain 91##AK022935|WDR91|29062|WD repeat domain 91	0.0	0.0	
chr7	149983364	149983473	reg1009756.p2	5.399	+	TSC_hg19_v1_chr7_+_149571066 BX640846 AK290086 AK094602 AK098362 AK172725 DQ995344 AY037164	-412337	+	BC023225 TSC_hg19_v1_chr7_-_149570892 BC028735	-412523	-	TSC_hg19_v1_chr7_+_149570049 AF452639 AK057700 NM_001100592 NM_145230	-413376	+	AB039791 NM_001164459	16650	-	TSC_hg19_v1_chr7_+_150020443 NM_001142928 NM_023942 AK055954	36986	+	TSC_hg19_v1_chr7_+_150020552 BC001354	37158	+	BX640846|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK290086|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK094602|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK098362|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK172725|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##DQ995344|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AY037164|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##BC023225|LOC401431|401431|uncharacterized LOC401431##BC028735|LOC401431|401431|uncharacterized LOC401431##AF452639|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK057700|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##NM_001100592|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##NM_145230|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AB039791|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164459|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001142928|LRRC61|65999|leucine rich repeat containing 61##NM_023942|LRRC61|65999|leucine rich repeat containing 61##AK055954|LRRC61|65999|leucine rich repeat containing 61##BC001354|LRRC61|65999|leucine rich repeat containing 61	0.0	0.010252	
chr10	32215216	32215336	reg1008931.p1	5.397	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-605187	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-607143	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-607319	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	2448	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	2509	-	TSC_hg19_v1_chr10_-_32344938 AB462413	129656	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.995696	0.0	denovo_WM_7:-4:0.410	denovo_WM_7:-6:0.409
chr17	27054487	27054627	reg1009511.p2	5.397	+	NM_001160407	-609	-	EU831756 EU831834 TSC_hg19_v1_chr17_-_27053250 BC014072 NM_138463	-1369	-	TSC_hg19_v1_chr17_+_27047009 NM_000984 U43701 AK130965 AK312123 BC058041 U37230 BC014459 U02032	-7549	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	1257	+	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	16512	+	TSC_hg19_v1_chr17_-_27139467 AK095569	84890	-	NM_001160407|TLCD1|116238|TLC domain containing 1##EU831756|TLCD1|116238|TLC domain containing 1##EU831834|TLCD1|116238|TLC domain containing 1##BC014072|TLCD1|116238|TLC domain containing 1##NM_138463|TLCD1|116238|TLC domain containing 1##NM_000984|RPL23A|6147|ribosomal protein L23a##U43701|RPL23A|6147|ribosomal protein L23a##AK130965|RPL23A|6147|ribosomal protein L23a##AK312123|RPL23A|6147|ribosomal protein L23a##BC058041|RPL23A|6147|ribosomal protein L23a##U37230|RPL23A|6147|ribosomal protein L23a##BC014459|RPL23A|6147|ribosomal protein L23a##U02032|RPL23A|6147|ribosomal protein L23a##BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##AK095569|C17orf63|55731|chromosome 17 open reading frame 63	0.981506	0.0	denovo_WM_7:91:0.704
chr19	6601727	6601893	reg1006819.p1	5.397	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-10652	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-10704	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-10778	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	68314	-	AF064090 NM_003807 NM_172014	68788	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	118846	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.07601	0.0	
chr4	99851320	99851418	reg1005287.p1	5.397	+	M15353 TSC_hg19_v1_chr4_-_99850288	-1078	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	-1109	-	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	-271610	-	NM_001130679 NM_001968 BC035166	417	-	NM_015143 TSC_hg19_v1_chr4_+_99916843	65446	+	TSC_hg19_v1_chr4_+_99916871 AK304239	65490	+	M15353|EIF4E|1977|eukaryotic translation initiation factor 4E##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E##BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_015143|METAP1|23173|methionyl aminopeptidase 1##AK304239|METAP1|23173|methionyl aminopeptidase 1	0.557819	0.0	denovo_WM_7:10:0.269
chr1	222756565	222756714	reg1009554.p1	5.396	+	AY358602 BC007638 BC016552 NM_024746	-35205	-	TSC_hg19_v1_chr1_-_221915485 NM_007207 NM_144729	-841153	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	-841209	-	L39060 AK001054 AK290970 TSC_hg19_v1_chr1_-_222763247 BC013808 AK315740 AK299536 NM_001201536 NM_005681 NM_139352	6538	-	TSC_hg19_v1_chr1_+_222791438 NM_198551 AK307412 AY359091 DQ166034	34761	+	TSC_hg19_v1_chr1_+_222817647 AK296712 AX775845	61013	+	AY358602|HHIPL2|79802|HHIP-like 2##BC007638|HHIPL2|79802|HHIP-like 2##BC016552|HHIPL2|79802|HHIP-like 2##NM_024746|HHIPL2|79802|HHIP-like 2##NM_007207|DUSP10|11221|dual specificity phosphatase 10##NM_144729|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10##L39060|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK001054|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK290970|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##BC013808|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK315740|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK299536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_001201536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_005681|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_139352|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_198551|MIA3|375056|melanoma inhibitory activity family, member 3##AK307412|MIA3|375056|melanoma inhibitory activity family, member 3##AY359091|MIA3|375056|melanoma inhibitory activity family, member 3##DQ166034|MIA3|375056|melanoma inhibitory activity family, member 3##AK296712|MIA3|375056|melanoma inhibitory activity family, member 3	0.95505	0.0	denovo_WM_7:-92:0.207	denovo_WM_7:-105:0.300
chr18	14376635	14376743	reg1009835.p1	5.396	+	TSC_hg19_v1_chr18_+_14179298 BC127726	-197380	+	BC010705 AK096748 BC024227 BC037787 NM_145287	-244232	-	AK315319 BC094710 NM_000529 AK289381	-461153	-	BC140940 BX649118 AK307658 NM_001137671	166855	-	AF269088 NM_001145029 BC028407	371596	+	TSC_hg19_v1_chr18_-_18691640 AK307388	4314949	-	BC127726|ANKRD20A5P|440482|ankyrin repeat domain 20 family, member A5, pseudogene##BC010705|ZNF519|162655|zinc finger protein 519##AK096748|ZNF519|162655|zinc finger protein 519##BC024227|ZNF519|162655|zinc finger protein 519##BC037787|ZNF519|162655|zinc finger protein 519##NM_145287|ZNF519|162655|zinc finger protein 519##AK315319|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC094710|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##NM_000529|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##AK289381|MC2R|4158|melanocortin 2 receptor (adrenocorticotropic hormone)##BC140940|POTEC|388468|POTE ankyrin domain family, member C##BX649118|POTEC|388468|POTE ankyrin domain family, member C##AK307658|POTEC|388468|POTE ankyrin domain family, member C##NM_001137671|POTEC|388468|POTE ankyrin domain family, member C##AF269088|ANKRD30B|374860|ankyrin repeat domain 30B##NM_001145029|ANKRD30B|374860|ankyrin repeat domain 30B##BC028407|ANKRD30B|374860|ankyrin repeat domain 30B##AK307388|ROCK1|6093|Rho-associated, coiled-coil containing protein kinase 1	0.0	0.0	
chr6	36163822	36164002	reg1006074.p2	5.396	+	NM_002754 TSC_hg19_v1_chr6_+_36098292 AK308018 BC085196 AF004709 BC000433 BC001641 BC004428 Y10488 AF092535 U93232 AF100546 AB451221 AB451344 AB463892 BT007221 CR536490 CR541687 DQ891372 DQ894551 EU832156 EU832250 AK222922	-65598	+	TSC_hg19_v1_chr6_+_35995587 BC000092 BC031574 L35264	-168256	+	AK303414 TSC_hg19_v1_chr6_+_35995584	-168329	+	TSC_hg19_v1_chr6_+_36164569 AB033112 NM_015695	648	+	TSC_hg19_v1_chr6_-_36164979 BC042825	1072	-	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	47049	+	NM_002754|MAPK13|5603|mitogen-activated protein kinase 13##AK308018|MAPK13|5603|mitogen-activated protein kinase 13##BC085196|MAPK13|5603|mitogen-activated protein kinase 13##AF004709|MAPK13|5603|mitogen-activated protein kinase 13##BC000433|MAPK13|5603|mitogen-activated protein kinase 13##BC001641|MAPK13|5603|mitogen-activated protein kinase 13##BC004428|MAPK13|5603|mitogen-activated protein kinase 13##Y10488|MAPK13|5603|mitogen-activated protein kinase 13##AF092535|MAPK13|5603|mitogen-activated protein kinase 13##U93232|MAPK13|5603|mitogen-activated protein kinase 13##AF100546|MAPK13|5603|mitogen-activated protein kinase 13##AB451221|MAPK13|5603|mitogen-activated protein kinase 13##AB451344|MAPK13|5603|mitogen-activated protein kinase 13##BT007221|MAPK13|5603|mitogen-activated protein kinase 13##CR536490|MAPK13|5603|mitogen-activated protein kinase 13##CR541687|MAPK13|5603|mitogen-activated protein kinase 13##DQ891372|MAPK13|5603|mitogen-activated protein kinase 13##DQ894551|MAPK13|5603|mitogen-activated protein kinase 13##EU832156|MAPK13|5603|mitogen-activated protein kinase 13##EU832250|MAPK13|5603|mitogen-activated protein kinase 13##AK222922|MAPK13|5603|mitogen-activated protein kinase 13##BC000092|MAPK14|1432|mitogen-activated protein kinase 14##BC031574|MAPK14|1432|mitogen-activated protein kinase 14##L35264|MAPK14|1432|mitogen-activated protein kinase 14##AK303414|MAPK14|1432|mitogen-activated protein kinase 14##AB033112|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_015695|BRPF3|27154|bromodomain and PHD finger containing, 3##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1	0.0	0.0	
chr6_qbl_hap6	3841714	3841857	reg1009675.p1	5.396	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.961662	0.0	denovo_WM_7:-40:0.975	denovo_WM_7:-61:0.808
chrX	70190602	70190776	reg1010266.p2	5.396	+	AF320612 BC033816 AX721169 BC021242 AK074865 AK075014 NM_001048164 NM_032803	-39740	-	AK057523 AK292471 BC036016 NM_001003811 NM_031276	-62126	-	TSC_hg19_v1_chrX_+_69674948 AK303377 NM_001166278	-515755	+	BT007203 TSC_hg19_v1_chrX_-_70288224 BC080535 AF171229 BC103847 BC103848 BC020559 NM_013346 AK312977	97511	-	TSC_hg19_v1_chrX_+_70316026 NM_001170931 NM_005938 AK300142 X93996 BC106761 AB463650 AF384029	125318	+	NM_001025265	135948	-	AF320612|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##BC033816|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK074865|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK075014|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##NM_001048164|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##NM_032803|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK057523|TEX11|56159|testis expressed 11##AK292471|TEX11|56159|testis expressed 11##BC036016|TEX11|56159|testis expressed 11##NM_001003811|TEX11|56159|testis expressed 11##NM_031276|TEX11|56159|testis expressed 11##AK303377|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_001166278|DLG3|1741|discs, large homolog 3 (Drosophila)##BT007203|SNX12|29934|sorting nexin 12##BC080535|SNX12|29934|sorting nexin 12##AF171229|SNX12|29934|sorting nexin 12##BC103847|SNX12|29934|sorting nexin 12##BC103848|SNX12|29934|sorting nexin 12##BC020559|SNX12|29934|sorting nexin 12##NM_013346|SNX12|29934|sorting nexin 12##AK312977|SNX12|29934|sorting nexin 12##NM_001170931|FOXO4|4303|forkhead box O4##NM_005938|FOXO4|4303|forkhead box O4##X93996|FOXO4|4303|forkhead box O4##BC106761|FOXO4|4303|forkhead box O4##AF384029|FOXO4|4303|forkhead box O4##NM_001025265|CXorf65|158830|chromosome X open reading frame 65	0.081909	0.092403	
chr14	75599248	75599404	reg1007637.p1	5.395	+	TSC_hg19_v1_chr14_-_75593752 AB082526 AK128693 NM_033116	-5574	-	AY048580 AB463142 AY080896 TSC_hg19_v1_chr14_-_75593718 BC093881 BC112101	-5656	-	NM_001042430 NM_024643 AK223359 AK303882 TSC_hg19_v1_chr14_+_75536343 AK026746 BC004259	-62983	+	AK023615 TSC_hg19_v1_chr14_-_75600130	794	-	TSC_hg19_v1_chr14_-_75643301 AL832012 AJ004913 X97442 L40397 AK222972 AK310371 BX248754	43968	-	TSC_hg19_v1_chr14_-_75643322 AK296800 AK312384	43994	-	AB082526|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AK128693|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##NM_033116|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AY048580|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AY080896|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC093881|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC112101|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##NM_001042430|FAM164C|79696|family with sequence similarity 164, member C##NM_024643|FAM164C|79696|family with sequence similarity 164, member C##AK223359|FAM164C|79696|family with sequence similarity 164, member C##AK303882|FAM164C|79696|family with sequence similarity 164, member C##AK026746|FAM164C|79696|family with sequence similarity 164, member C##BC004259|FAM164C|79696|family with sequence similarity 164, member C##AK023615|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AL832012|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AJ004913|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##X97442|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##L40397|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK222972|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK310371|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BX248754|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK296800|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK312384|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)	0.0	0.696169	CTCF.p2:-50:0.696
chr19	16556201	16556350	reg1001066.p4	5.395	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-120506	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-120634	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-247525	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	26501	-	TSC_hg19_v1_chr19_-_16582810 AK291359	26577	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	50695	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.0	0.0	
chr2	85959023	85959131	reg1005957.p2	5.395	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-37597	+	NM_000542 NM_198843	-63214	-	TSC_hg19_v1_chr2_-_85888519 AB439563 AB439564 AB439565 AB439566	-70502	-	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	21928	+	AY152815 NM_001042437	135715	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	157009	-	NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AB439563|SFTPB|6439|surfactant protein B##AB439565|SFTPB|6439|surfactant protein B##NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	0.997171	0.0	denovo_WM_7:79:0.841
chr5	124083329	124083405	reg1003925.p2	5.395	+	BC131507 AB033107 BC151226 NM_020747	-2579	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1235485	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1324223	-	NM_001146319 AK316288 AK300154	1612447	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1675476	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1675820	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.893789	0.0	
chr6	89471562	89471722	reg1007003.p2	5.395	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-595876	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-616606	-	BC029488 NM_030960 AF203447	-714112	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	201549	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	201666	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	201705	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.0	0.012618	
chr10	31390138	31390256	reg1011202.p1	5.394	+	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	-69376	-	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	-101745	-	AF139543 BC066294 NM_183058	-471562	-	TSC_hg19_v1_chr10_+_31607451 BX647794	217239	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	217760	-	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	217936	+	BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##BX647794|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1	0.0	0.0	
chr11	107540714	107540823	reg1007738.p1	5.394	+	TSC_hg19_v1_chr11_+_107462073 BC028725	-78692	+	TSC_hg19_v1_chr11_+_107461998 AK303689 AK054794	-78783	+	TSC_hg19_v1_chr11_+_107461813 AK297351 NM_001130037 NM_018712	-78957	+	BC104185 BC113930 BC113987 BC104150 BC094685 AK312097 BC005261 U96094 NM_003063	41991	-	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	188737	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	188820	-	BC028725|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK303689|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK054794|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK297351|ELMOD1|55531|ELMO/CED-12 domain containing 1##NM_001130037|ELMOD1|55531|ELMO/CED-12 domain containing 1##NM_018712|ELMOD1|55531|ELMO/CED-12 domain containing 1##BC104185|SLN|6588|sarcolipin##BC113930|SLN|6588|sarcolipin##BC113987|SLN|6588|sarcolipin##BC104150|SLN|6588|sarcolipin##BC094685|SLN|6588|sarcolipin##AK312097|SLN|6588|sarcolipin##BC005261|SLN|6588|sarcolipin##U96094|SLN|6588|sarcolipin##NM_003063|SLN|6588|sarcolipin##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2	1.981004	0.0	denovo_WM_7:-45:0.329	denovo_WM_7:-62:0.358	denovo_WM_7:-65:0.526
chr18	21031477	21031657	reg1008868.p1	5.394	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	-13696	-	BC037218 NM_138375	-295779	+	EF028204 NM_001100619	-315841	+	AK057292 NM_003831	1219	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	1679	+	TSC_hg19_v1_chr18_+_21033263 BC039729	1703	+	AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)##BC039729|RIOK3|8780|RIO kinase 3 (yeast)	2.571584	0.0	denovo_WM_7:-32:0.632	denovo_WM_7:-69:0.218	denovo_WM_7:-70:0.353	denovo_WM_7:-85:0.472	denovo_WM_7:-87:0.271
chr2	157252744	157252859	reg1006145.p1	5.394	+	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	-63638	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	-66111	-	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1697612	+	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	39157	+	TSC_hg19_v1_chr2_+_157291981 AK290057	39204	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	39433	+	S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK290057|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.871209	0.0	denovo_WM_7:-7:0.581	denovo_WM_7:-8:0.235
chr6	12289644	12289791	reg1010052.p1	5.394	+	NM_002114	-276994	+	NM_001143948 NM_032744	-510438	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-751219	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	876	+	TSC_hg19_v1_chr6_+_12514301 D28417	224585	+	AK295263 TSC_hg19_v1_chr6_+_12716998	427226	+	NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1	0.0	0.119778	
chr8	57880785	57880965	reg1010614.p1	5.394	+	BC107706 TSC_hg19_v1_chr8_-_57359201 AK309758 AK314908 NM_001135690	-521646	-	CR541808 CR541828 DQ890865 DQ890871 DQ894027 BC032505 NM_006211	-522324	-	TSC_hg19_v1_chr8_+_57358383 AK091563 AX747062	-522503	+	AY032885 TSC_hg19_v1_chr8_-_57906227	25381	-	TSC_hg19_v1_chr8_-_57906381 BC017797	25503	-	BC067814 TSC_hg19_v1_chr8_-_57906402	25527	-	BC107706|PENK|5179|proenkephalin##AK314908|PENK|5179|proenkephalin##NM_001135690|PENK|5179|proenkephalin##CR541808|PENK|5179|proenkephalin##CR541828|PENK|5179|proenkephalin##DQ890865|PENK|5179|proenkephalin##DQ890871|PENK|5179|proenkephalin##DQ894027|PENK|5179|proenkephalin##BC032505|PENK|5179|proenkephalin##NM_006211|PENK|5179|proenkephalin##AY032885|IMPAD1|54928|inositol monophosphatase domain containing 1##BC017797|IMPAD1|54928|inositol monophosphatase domain containing 1##BC067814|IMPAD1|54928|inositol monophosphatase domain containing 1	1.180195	0.0	denovo_WM_7:80:0.698
chrX	118800039	118800178	reg1006471.p1	5.394	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-60280	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-73126	-	BC042021 NM_181777	-85811	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	26977	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	27024	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	27071	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.996668	0.0	denovo_WM_7:-55:0.826
chr14	90234539	90234719	reg1010295.p2	5.393	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	-149034	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-351219	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-355853	-	BC001787 BX247991 AK298930 AK094740 NM_145231	186431	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	187617	+	TSC_hg19_v1_chr14_+_90422278 AK001952 BC015474 AK315549 BX161451	187650	+	AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##AK001952|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##BC015474|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##AK315549|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##BX161451|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.0	0.0	
chr17	5124373	5124510	reg1009388.p1	5.393	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-29061	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-29268	-	AY143550 NM_004505 X63546 X63547	-92755	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	13660	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	61225	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	198484	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.996253	0.0	denovo_WM_7:-80:0.826
chr17_ctg5_hap1	642009	642139	reg1009448.p1	5.393	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr18	57574568	57574718	reg1008653.p1	5.393	+	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	-7414	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-209993	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-210052	-	AK314130 NM_005912	465357	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1583131	+	AK096495 NM_173557	1985660	-	NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2##AK096495|RNF152|220441|ring finger protein 152##NM_173557|RNF152|220441|ring finger protein 152	0.452441	0.0	denovo_WM_7:-1:0.405
chr14	79188193	79188370	reg1010004.p1	5.392	+	AB018286 BC152457 NM_004796	-318189	+	TSC_hg19_v1_chr14_+_78266441 NM_001142545 NM_020421 AK299430 BX248292 BC017459 BC058906 AK096919	-921831	+	AB464230 BT020060 BT020061 CR457433 BC051806 BC065286 TSC_hg19_v1_chr14_-_78227500 AK302246 AX775981 U51432 BC105585 BC108903 AF045184 AK292274 NM_012245 AK293619 AK316087	-960772	-	NM_001105250 NM_138970 AK056530 BC059368 BC068469	557423	+	BC136514 AB041843 BC074882 BC063118 NM_001007023 NM_001242502 NM_001242503 U53506 AF093774 NM_013989	1489623	-	AK292210 NM_000793	1509115	-	AB018286|NRXN3|9369|neurexin 3##BC152457|NRXN3|9369|neurexin 3##NM_004796|NRXN3|9369|neurexin 3##NM_001142545|ADCK1|57143|aarF domain containing kinase 1##NM_020421|ADCK1|57143|aarF domain containing kinase 1##AK299430|ADCK1|57143|aarF domain containing kinase 1##BX248292|ADCK1|57143|aarF domain containing kinase 1##BC017459|ADCK1|57143|aarF domain containing kinase 1##BC058906|ADCK1|57143|aarF domain containing kinase 1##AK096919|ADCK1|57143|aarF domain containing kinase 1##BT020060|SNW1|22938|SNW domain containing 1##BT020061|SNW1|22938|SNW domain containing 1##CR457433|SNW1|22938|SNW domain containing 1##BC065286|SNW1|22938|SNW domain containing 1##AK302246|SNW1|22938|SNW domain containing 1##AX775981|SNW1|22938|SNW domain containing 1##U51432|SNW1|22938|SNW domain containing 1##BC105585|SNW1|22938|SNW domain containing 1##BC108903|SNW1|22938|SNW domain containing 1##AF045184|SNW1|22938|SNW domain containing 1##AK292274|SNW1|22938|SNW domain containing 1##NM_012245|SNW1|22938|SNW domain containing 1##AK293619|SNW1|22938|SNW domain containing 1##AK316087|SNW1|22938|SNW domain containing 1##NM_001105250|NRXN3|9369|neurexin 3##NM_138970|NRXN3|9369|neurexin 3##AK056530|NRXN3|9369|neurexin 3##BC059368|NRXN3|9369|neurexin 3##BC068469|NRXN3|9369|neurexin 3##BC136514|DIO2|1734|deiodinase, iodothyronine, type II##AB041843|DIO2|1734|deiodinase, iodothyronine, type II##BC074882|DIO2|1734|deiodinase, iodothyronine, type II##BC063118|DIO2|1734|deiodinase, iodothyronine, type II##NM_001007023|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242502|DIO2|1734|deiodinase, iodothyronine, type II##NM_001242503|DIO2|1734|deiodinase, iodothyronine, type II##U53506|DIO2|1734|deiodinase, iodothyronine, type II##AF093774|DIO2|1734|deiodinase, iodothyronine, type II##NM_013989|DIO2|1734|deiodinase, iodothyronine, type II##AK292210|DIO2|1734|deiodinase, iodothyronine, type II##NM_000793|DIO2|1734|deiodinase, iodothyronine, type II	1.816949	0.0	denovo_WM_7:5:0.608	denovo_WM_7:-88:0.916
chr17	17906783	17906904	reg1007467.p2	5.392	+	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	-30643	+	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	-31102	-	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	-166519	-	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	35560	-	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	35964	+	TSC_hg19_v1_chr17_+_17991289 AK313362 BC062572 BC000493 NM_001388 AK297569 X80754 AK295575 DQ890768 DQ893929 BT006976	84425	+	NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39##AK313362|DRG2|1819|developmentally regulated GTP binding protein 2##BC062572|DRG2|1819|developmentally regulated GTP binding protein 2##BC000493|DRG2|1819|developmentally regulated GTP binding protein 2##NM_001388|DRG2|1819|developmentally regulated GTP binding protein 2##AK297569|DRG2|1819|developmentally regulated GTP binding protein 2##X80754|DRG2|1819|developmentally regulated GTP binding protein 2##AK295575|DRG2|1819|developmentally regulated GTP binding protein 2##DQ890768|DRG2|1819|developmentally regulated GTP binding protein 2##DQ893929|DRG2|1819|developmentally regulated GTP binding protein 2##BT006976|DRG2|1819|developmentally regulated GTP binding protein 2	1.992638	0.0	denovo_WM_7:-19:0.415	denovo_WM_7:-20:0.284	denovo_WM_7:-35:0.291	denovo_WM_7:-36:0.422
chr19	42374789	42374944	reg1008975.p2	5.392	+	TSC_hg19_v1_chr19_+_42364325 AK311786 BC017386 D28389 M81757	-10536	+	TSC_hg19_v1_chr19_+_42364273 BC000023	-10590	+	BC018616 NM_001022	-10879	+	NM_001783 NM_021601 AK223371 M80462 M86921 AK315337 BC113731 BC113733 S46706 HQ258131 M74721 S75217 S79248 X83540	6415	+	BC064996 TSC_hg19_v1_chr19_+_42387266 NM_004706 NM_198977 BC011726	12411	+	TSC_hg19_v1_chr19_+_42387309 U64105	12452	+	AK311786|RPS19|6223|ribosomal protein S19##BC017386|RPS19|6223|ribosomal protein S19##M81757|RPS19|6223|ribosomal protein S19##BC000023|RPS19|6223|ribosomal protein S19##BC018616|RPS19|6223|ribosomal protein S19##NM_001022|RPS19|6223|ribosomal protein S19##NM_001783|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##NM_021601|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##AK223371|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##M80462|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##M86921|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##AK315337|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##BC113731|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##BC113733|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##S46706|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##HQ258131|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##M74721|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##S75217|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##S79248|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##X83540|CD79A|973|CD79a molecule, immunoglobulin-associated alpha##BC064996|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_004706|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_198977|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC011726|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##U64105|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1	1.982248	0.0	denovo_WM_7:59:0.248	denovo_WM_7:60:0.669	denovo_WM_7:75:0.817
chr2	33620898	33621007	reg1006364.p1	5.392	+	TSC_hg19_v1_chr2_+_33359657 NM_000627 NM_001166264 NM_001166265 NM_001166266 AB208801 BC130289 BC144127 BC144128 M34057 AB384737 AF489528	-261247	+	NM_206943	-448584	+	NM_001193509 NM_017735 AK299196 BC063791 TSC_hg19_v1_chr2_+_32853177 AK027570	-767818	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	40496	+	NM_001139488	80368	+	TSC_hg19_v1_chr2_+_33701715 BX647990	80744	+	NM_000627|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166264|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166265|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166266|LTBP1|4052|latent transforming growth factor beta binding protein 1##AB208801|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC130289|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144127|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144128|LTBP1|4052|latent transforming growth factor beta binding protein 1##M34057|LTBP1|4052|latent transforming growth factor beta binding protein 1##AF489528|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_206943|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001193509|TTC27|55622|tetratricopeptide repeat domain 27##NM_017735|TTC27|55622|tetratricopeptide repeat domain 27##AK299196|TTC27|55622|tetratricopeptide repeat domain 27##BC063791|TTC27|55622|tetratricopeptide repeat domain 27##AK027570|TTC27|55622|tetratricopeptide repeat domain 27##AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)	0.996913	0.722471	denovo_WM_7:28:0.814	CTCF.p2:-32:0.722
chr2	69875869	69875958	reg1005216.p2	5.392	+	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	-4821	-	TSC_hg19_v1_chr2_-_69870872 AB028971	-5056	-	TSC_hg19_v1_chr2_-_69870783 AK310951 AK056043	-5145	-	BC063672 NM_001153 BC000182 TSC_hg19_v1_chr2_+_69969232 AK293177	93257	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	93352	+	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	180894	+	NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1##AB028971|AAK1|22848|AP2 associated kinase 1##AK310951|AAK1|22848|AP2 associated kinase 1##AK056043|AAK1|22848|AP2 associated kinase 1##BC063672|ANXA4|307|annexin A4##NM_001153|ANXA4|307|annexin A4##BC000182|ANXA4|307|annexin A4##AK293177|ANXA4|307|annexin A4##BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)	1.374261	0.0	denovo_WM_7:97:0.335
chr12	125312580	125312748	reg1008898.p2	5.391	+	AB209089 NM_001077261 NM_001206654 NM_006312 TSC_hg19_v1_chr12_-_125052138	-260589	-	TSC_hg19_v1_chr12_-_125002875 BC033087	-309805	-	AK126577 NM_181709	-538955	+	DQ892837 DQ896083 BC093732 BC112037 BC143319 Z22555 TSC_hg19_v1_chr12_-_125348344	35641	-	TSC_hg19_v1_chr12_-_125348408 AB209436 BC022087 BC080647 AK304730	35713	-	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	35809	-	AB209089|NCOR2|9612|nuclear receptor corepressor 2##NM_001077261|NCOR2|9612|nuclear receptor corepressor 2##NM_001206654|NCOR2|9612|nuclear receptor corepressor 2##NM_006312|NCOR2|9612|nuclear receptor corepressor 2##AK126577|FAM101A|144347|family with sequence similarity 101, member A##NM_181709|FAM101A|144347|family with sequence similarity 101, member A##DQ892837|SCARB1|949|scavenger receptor class B, member 1##DQ896083|SCARB1|949|scavenger receptor class B, member 1##BC093732|SCARB1|949|scavenger receptor class B, member 1##BC112037|SCARB1|949|scavenger receptor class B, member 1##BC143319|SCARB1|949|scavenger receptor class B, member 1##Z22555|SCARB1|949|scavenger receptor class B, member 1##AB209436|SCARB1|949|scavenger receptor class B, member 1##BC022087|SCARB1|949|scavenger receptor class B, member 1##BC080647|SCARB1|949|scavenger receptor class B, member 1##AK304730|SCARB1|949|scavenger receptor class B, member 1##NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1	0.989656	0.0	denovo_WM_7:13:0.904
chr20	46045512	46045672	reg1001052.p2	5.391	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-60104	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-68945	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-118023	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	85030	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	85092	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	369160	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.0	0.0	
chr18	46461130	46461241	reg1008252.p1	5.390	+	TSC_hg19_v1_chr18_+_46065556 AB007887 NM_001142397 NM_014772 BC042146	-395412	+	TSC_hg19_v1_chr18_-_45935627 AM991276 AM991277 AM991278 AM991279 AM991280 AM991281 AM991282 AM991283 AM991284 AM991285 AM988839	-525476	-	AM988836 AK296709 NM_001039360 EF120357	-797486	-	AK131394 NM_001190823	7962	-	AK301535 NM_001190822	14517	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	15582	-	AB007887|CTIF|9811|CBP80/20-dependent translation initiation factor##NM_001142397|CTIF|9811|CBP80/20-dependent translation initiation factor##NM_014772|CTIF|9811|CBP80/20-dependent translation initiation factor##BC042146|CTIF|9811|CBP80/20-dependent translation initiation factor##AM988839|ZBTB7C|201501|zinc finger and BTB domain containing 7C##AM988836|ZBTB7C|201501|zinc finger and BTB domain containing 7C##NM_001039360|ZBTB7C|201501|zinc finger and BTB domain containing 7C##EF120357|ZBTB7C|201501|zinc finger and BTB domain containing 7C##AK131394|SMAD7|4092|SMAD family member 7##NM_001190823|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7	0.975642	0.0	denovo_WM_7:-34:0.884
chr21	25567332	25567451	reg1009779.p1	5.390	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-3196618	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-3196701	+	TSC_hg19_v1_chr21_+_22370656 BC052946 NM_004540	-3196749	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	233677	+	TSC_hg19_v1_chr21_+_26934442 AF402776	1367081	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	1412424	-	BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##BC052946|NCAM2|4685|neural cell adhesion molecule 2##NM_004540|NCAM2|4685|neural cell adhesion molecule 2##AK124194|FLJ42200|400860|FLJ42200 protein##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39	1.660458	0.0	denovo_WM_7:22:0.422
chr5	1313038	1313218	reg1008487.p2	5.390	+	JF896283 JF896284 AB085628 AB086379 AB086950 JF896280 JF896286 AF015950 AX810036 AX810378 AF018167 NM_001193376 NM_198253	-18037	-	AK055798 NM_182632 AK298257 BC056757	-87638	+	AK096054 AK290811 NM_001003841 BC146290 BC148801 AB527217 AY591756 AY596807	-111391	+	AB045223 DQ892147 DQ895343 AK027306 BC025305 NM_030782 TSC_hg19_v1_chr5_-_1345095	31894	-	S46955 EF174603 M95167 NM_001044	132398	-	CU676500 BC020166 AK090444 TSC_hg19_v1_chr5_-_1494996	181806	-	JF896283|TERT|7015|telomerase reverse transcriptase##JF896284|TERT|7015|telomerase reverse transcriptase##AB085628|TERT|7015|telomerase reverse transcriptase##AB086379|TERT|7015|telomerase reverse transcriptase##AB086950|TERT|7015|telomerase reverse transcriptase##JF896280|TERT|7015|telomerase reverse transcriptase##AF015950|TERT|7015|telomerase reverse transcriptase##AX810036|TERT|7015|telomerase reverse transcriptase##AX810378|TERT|7015|telomerase reverse transcriptase##AF018167|TERT|7015|telomerase reverse transcriptase##NM_001193376|TERT|7015|telomerase reverse transcriptase##NM_198253|TERT|7015|telomerase reverse transcriptase##AK055798|SLC6A18|348932|solute carrier family 6, member 18##NM_182632|SLC6A18|348932|solute carrier family 6, member 18##AK298257|SLC6A18|348932|solute carrier family 6, member 18##BC056757|SLC6A18|348932|solute carrier family 6, member 18##AK096054|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AK290811|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##NM_001003841|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##BC146290|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##BC148801|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AY591756|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AY596807|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AB045223|CLPTM1L|81037|CLPTM1-like##DQ892147|CLPTM1L|81037|CLPTM1-like##DQ895343|CLPTM1L|81037|CLPTM1-like##AK027306|CLPTM1L|81037|CLPTM1-like##BC025305|CLPTM1L|81037|CLPTM1-like##NM_030782|CLPTM1L|81037|CLPTM1-like##S46955|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##EF174603|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##M95167|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##NM_001044|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##BC020166|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1##AK090444|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1	0.0	0.0	
chr5	137901013	137901122	reg1008459.p1	5.390	+	TSC_hg19_v1_chr5_-_137878926 BC014269 NM_004730	-22124	-	TSC_hg19_v1_chr5_-_137878906 X81625	-22160	-	TSC_hg19_v1_chr5_-_137878899 AK312510	-22172	-	BC030634 CU674234 TSC_hg19_v1_chr5_-_137911029 AB463063 EU446981 AK297795 L15189	9952	-	AK222758 TSC_hg19_v1_chr5_-_137911101 BC000478 BC024034 AK297897 AK293990 L11066 AK315177	10021	-	NM_004134	10250	-	BC014269|ETF1|2107|eukaryotic translation termination factor 1##NM_004730|ETF1|2107|eukaryotic translation termination factor 1##X81625|ETF1|2107|eukaryotic translation termination factor 1##AK312510|ETF1|2107|eukaryotic translation termination factor 1##BC030634|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##EU446981|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK297795|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##L15189|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK222758|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC000478|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC024034|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK297897|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK293990|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##L11066|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK315177|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##NM_004134|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)	0.190662	0.0	
chr5	86417263	86417403	reg1009589.p1	5.390	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-503516	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-503575	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2736669	-	TSC_hg19_v1_chr5_+_86563706 CR749722	146352	+	TSC_hg19_v1_chr5_+_86563831 BC131816	146493	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	146733	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.0	0.0	
chr20	21284913	21285028	reg1009147.p2	5.389	+	BC142960 TSC_hg19_v1_chr20_+_21283980 NM_012255 AK001573 AF064257 BC131775 AY382900 AK303312 AK314602 AL136841 AF152169 BC000315	-995	+	TSC_hg19_v1_chr20_+_21106722 BC105093 BC113370 AK295355 BC045826	-178243	+	NM_001163022 NM_001163023 NM_018474 TSC_hg19_v1_chr20_+_21106657 AF451990 BC039296 AK293567 AK293166 AK025476	-178306	+	NM_033176 TSC_hg19_v1_chr20_-_21378181	93144	-	NM_002509	209693	-	TSC_hg19_v1_chr20_+_21686296 NM_006192	401324	+	BC142960|XRN2|22803|5'-3' exoribonuclease 2##NM_012255|XRN2|22803|5'-3' exoribonuclease 2##AK001573|XRN2|22803|5'-3' exoribonuclease 2##AF064257|XRN2|22803|5'-3' exoribonuclease 2##BC131775|XRN2|22803|5'-3' exoribonuclease 2##AY382900|XRN2|22803|5'-3' exoribonuclease 2##AK303312|XRN2|22803|5'-3' exoribonuclease 2##AK314602|XRN2|22803|5'-3' exoribonuclease 2##AL136841|XRN2|22803|5'-3' exoribonuclease 2##AF152169|XRN2|22803|5'-3' exoribonuclease 2##BC000315|XRN2|22803|5'-3' exoribonuclease 2##BC105093|PLK1S1|55857|polo-like kinase 1 substrate 1##BC113370|PLK1S1|55857|polo-like kinase 1 substrate 1##AK295355|PLK1S1|55857|polo-like kinase 1 substrate 1##BC045826|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163022|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163023|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_018474|PLK1S1|55857|polo-like kinase 1 substrate 1##AF451990|PLK1S1|55857|polo-like kinase 1 substrate 1##BC039296|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293567|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293166|PLK1S1|55857|polo-like kinase 1 substrate 1##AK025476|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_033176|NKX2-4|644524|NK2 homeobox 4##NM_002509|NKX2-2|4821|NK2 homeobox 2##NM_006192|PAX1|5075|paired box 1	1.155836	0.0	denovo_WM_7:23:0.425	denovo_WM_7:24:0.425
chr5	148799447	148799627	reg1006616.p2	5.389	+	TSC_hg19_v1_chr5_+_148786440 AK126481 CR933654 BX640700	-13055	+	AB590699 CR457192 BC113925 BC113946 AF152098 AF184969 AF218727 AY358931 AF110385 AF212311 NM_014443 TSC_hg19_v1_chr5_-_148758856	-40715	-	TSC_hg19_v1_chr5_+_148737613 AF451985 BC000014	-61914	+	AF218004 TSC_hg19_v1_chr5_-_148930935 AK303794 BC021971 BC025371 BC007246	131387	-	TSC_hg19_v1_chr5_-_148930950 AK294942	131429	-	TSC_hg19_v1_chr5_-_148931006 NM_001025105 NM_001892	131469	-	AK126481|MIR143HG|728264|MIR143 host gene (non-protein coding)##CR933654|MIR143HG|728264|MIR143 host gene (non-protein coding)##CR457192|IL17B|27190|interleukin 17B##BC113925|IL17B|27190|interleukin 17B##BC113946|IL17B|27190|interleukin 17B##AF152098|IL17B|27190|interleukin 17B##AF184969|IL17B|27190|interleukin 17B##AF218727|IL17B|27190|interleukin 17B##AY358931|IL17B|27190|interleukin 17B##AF110385|IL17B|27190|interleukin 17B##AF212311|IL17B|27190|interleukin 17B##NM_014443|IL17B|27190|interleukin 17B##AF451985|PCYOX1L|78991|prenylcysteine oxidase 1 like##BC000014|PCYOX1L|78991|prenylcysteine oxidase 1 like##AF218004|CSNK1A1|1452|casein kinase 1, alpha 1##AK303794|CSNK1A1|1452|casein kinase 1, alpha 1##BC021971|CSNK1A1|1452|casein kinase 1, alpha 1##BC025371|CSNK1A1|1452|casein kinase 1, alpha 1##BC007246|CSNK1A1|1452|casein kinase 1, alpha 1##AK294942|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001025105|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001892|CSNK1A1|1452|casein kinase 1, alpha 1	0.767167	0.0	denovo_WM_7:-40:0.724
chr10	76995772	76995952	reg1009555.p1	5.388	+	TSC_hg19_v1_chr10_-_76995794 CU690500 BC023663 AK302283 AK074421 AY358476 BC047774 NM_144589 AK290452	-91	-	BC012883 L08666 TSC_hg19_v1_chr10_+_76970608	-25252	+	TSC_hg19_v1_chr10_+_76970563 BC000165 BC072407 AK315919 AK296635	-25308	+	TSC_hg19_v1_chr10_-_77159861 AK092897 AX747796	164083	-	AK127647 TSC_hg19_v1_chr10_-_77160688	164808	-	TSC_hg19_v1_chr10_-_77161142 CU680472 EU446545 BC013011 BC021165	165348	-	BC023663|COMTD1|118881|catechol-O-methyltransferase domain containing 1##AK302283|COMTD1|118881|catechol-O-methyltransferase domain containing 1##AK074421|COMTD1|118881|catechol-O-methyltransferase domain containing 1##AY358476|COMTD1|118881|catechol-O-methyltransferase domain containing 1##BC047774|COMTD1|118881|catechol-O-methyltransferase domain containing 1##NM_144589|COMTD1|118881|catechol-O-methyltransferase domain containing 1##AK290452|COMTD1|118881|catechol-O-methyltransferase domain containing 1##BC012883|VDAC2|7417|voltage-dependent anion channel 2##L08666|VDAC2|7417|voltage-dependent anion channel 2##BC000165|VDAC2|7417|voltage-dependent anion channel 2##BC072407|VDAC2|7417|voltage-dependent anion channel 2##AK315919|VDAC2|7417|voltage-dependent anion channel 2##AK296635|VDAC2|7417|voltage-dependent anion channel 2##AK092897|ZNF503|84858|zinc finger protein 503##AK127647|ZNF503|84858|zinc finger protein 503##EU446545|ZNF503|84858|zinc finger protein 503##BC013011|ZNF503|84858|zinc finger protein 503##BC021165|ZNF503|84858|zinc finger protein 503	0.0	0.531267	CTCF.p2:15:0.511
chr1	168317639	168317785	reg1007271.p1	5.388	+	AJ010277 NM_005149 BC093664 BC093666 EU446671	-67410	+	TSC_hg19_v1_chr1_+_168195262 BC068098 CU686619	-122419	+	TSC_hg19_v1_chr1_+_168195254 AK290325 NM_199344	-122461	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	195505	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	228080	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	380717	-	AJ010277|TBX19|9095|T-box 19##NM_005149|TBX19|9095|T-box 19##BC093664|TBX19|9095|T-box 19##BC093666|TBX19|9095|T-box 19##EU446671|TBX19|9095|T-box 19##BC068098|SFT2D2|375035|SFT2 domain containing 2##AK290325|SFT2D2|375035|SFT2 domain containing 2##NM_199344|SFT2D2|375035|SFT2 domain containing 2##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin	0.924596	0.0	denovo_WM_7:-17:0.210	denovo_WM_7:-18:0.493
chr17	73671101	73671250	reg1006117.p2	5.388	+	NM_013260 TSC_hg19_v1_chr17_+_73663441 AK095265 AK298060 BC030233 AY082382 BC007592 AF119664 BC063793 AK002202 AK310177 BC011724 AB464187 AF087869 CU675719 EU446793 BC013409 AK023157	-7742	+	BC063440 EF560729 TSC_hg19_v1_chr17_-_73663235 BC016911 AK075084 AK304168 AB042823 AB042824 AB042825 NM_001003715 NM_001003716 NM_004259	-7927	-	BC062771 NM_001162997 AK131023	-28494	+	NM_000213 NM_001005731 X53587 TSC_hg19_v1_chr17_+_73717539	46356	+	TSC_hg19_v1_chr17_+_73717581 X51841 BC126411 BC143738 BC143742 AK304792 AK310952	46398	+	BC118916 TSC_hg19_v1_chr17_+_73717603 AB208913	46426	+	NM_013260|SAP30BP|29115|SAP30 binding protein##AK095265|SAP30BP|29115|SAP30 binding protein##AK298060|SAP30BP|29115|SAP30 binding protein##BC030233|SAP30BP|29115|SAP30 binding protein##AY082382|SAP30BP|29115|SAP30 binding protein##BC007592|SAP30BP|29115|SAP30 binding protein##AF119664|SAP30BP|29115|SAP30 binding protein##BC063793|SAP30BP|29115|SAP30 binding protein##AK002202|SAP30BP|29115|SAP30 binding protein##AK310177|SAP30BP|29115|SAP30 binding protein##BC011724|SAP30BP|29115|SAP30 binding protein##AF087869|SAP30BP|29115|SAP30 binding protein##EU446793|SAP30BP|29115|SAP30 binding protein##BC013409|SAP30BP|29115|SAP30 binding protein##AK023157|SAP30BP|29115|SAP30 binding protein##BC063440|RECQL5|9400|RecQ protein-like 5##EF560729|RECQL5|9400|RecQ protein-like 5##BC016911|RECQL5|9400|RecQ protein-like 5##AK075084|RECQL5|9400|RecQ protein-like 5##AK304168|RECQL5|9400|RecQ protein-like 5##AB042823|RECQL5|9400|RecQ protein-like 5##AB042824|RECQL5|9400|RecQ protein-like 5##AB042825|RECQL5|9400|RecQ protein-like 5##NM_001003715|RECQL5|9400|RecQ protein-like 5##NM_001003716|RECQL5|9400|RecQ protein-like 5##NM_004259|RECQL5|9400|RecQ protein-like 5##BC062771|C17orf110|100130933|chromosome 17 open reading frame 110##NM_001162997|C17orf110|100130933|chromosome 17 open reading frame 110##AK131023|C17orf110|100130933|chromosome 17 open reading frame 110##NM_000213|ITGB4|3691|integrin, beta 4##NM_001005731|ITGB4|3691|integrin, beta 4##X53587|ITGB4|3691|integrin, beta 4##X51841|ITGB4|3691|integrin, beta 4##BC126411|ITGB4|3691|integrin, beta 4##BC143738|ITGB4|3691|integrin, beta 4##BC143742|ITGB4|3691|integrin, beta 4##AK304792|ITGB4|3691|integrin, beta 4##AK310952|ITGB4|3691|integrin, beta 4##BC118916|ITGB4|3691|integrin, beta 4##AB208913|ITGB4|3691|integrin, beta 4	0.969646	0.892881	CTCF.p2:14:0.893	denovo_WM_7:48:0.237	denovo_WM_7:54:0.284
chr19	36037055	36037171	reg1009136.p1	5.388	+	TSC_hg19_v1_chr19_-_36036923 CR627053	-205	-	TSC_hg19_v1_chr19_+_36036553 NM_001242597 NM_001242598 NM_032635 Y18007 BC001118 CU674562	-569	+	TSC_hg19_v1_chr19_-_36036403 AK092032 AX747325	-709	-	AK058032 AK223259 NM_000704	17446	-	TSC_hg19_v1_chr19_+_36103655 BC064390 NM_015302 BC171905 BC157882 AK307703 AB020648 BC013947	66558	+	TSC_hg19_v1_chr19_+_36119937 BC031682	82829	+	CR627053|LOC100506469|100506469|uncharacterized LOC100506469##NM_001242597|TMEM147|10430|transmembrane protein 147##NM_001242598|TMEM147|10430|transmembrane protein 147##NM_032635|TMEM147|10430|transmembrane protein 147##Y18007|TMEM147|10430|transmembrane protein 147##BC001118|TMEM147|10430|transmembrane protein 147##AK092032|LOC100506469|100506469|uncharacterized LOC100506469##AK058032|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##AK223259|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##NM_000704|ATP4A|495|ATPase, H+/K+ exchanging, alpha polypeptide##BC064390|HAUS5|23354|HAUS augmin-like complex, subunit 5##NM_015302|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC171905|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC157882|HAUS5|23354|HAUS augmin-like complex, subunit 5##AK307703|HAUS5|23354|HAUS augmin-like complex, subunit 5##AB020648|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC013947|HAUS5|23354|HAUS augmin-like complex, subunit 5##BC031682|RBM42|79171|RNA binding motif protein 42	0.0	0.0	
chr2	202073434	202073597	reg1000574.p1	5.388	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	-25655	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	-25895	+	AF041459 NM_001202515	-68518	+	NM_001080124 NM_001228 NM_033355 NM_033358 AF422927 AF422928 BC010390 AK310630 BC017031 U60520 X98176	24710	+	NM_001080125 AF422926 BC068050 AF422925 AF422929 X98172 AY429525	49282	+	NM_033356 X98173	51741	+	AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AF041459|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202515|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001080124|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001228|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033355|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033358|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422927|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422928|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC010390|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310630|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC017031|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##U60520|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98176|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001080125|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422926|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC068050|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422929|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98172|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033356|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98173|CASP8|841|caspase 8, apoptosis-related cysteine peptidase	0.869786	0.0	denovo_WM_7:-102:0.469	denovo_WM_7:-103:0.208
chr5	134185232	134185329	reg1006483.p1	5.388	+	TSC_hg19_v1_chr5_+_134181739 BX648529 AJ437658	-3523	+	TSC_hg19_v1_chr5_+_134181685 NM_001135586 AK094881	-3654	+	BC053677 NM_152409	-3911	+	AK056512 NM_024715	24162	+	TSC_hg19_v1_chr5_+_134210061 BC001615 AK026278 AK225454 AK225462 BC032568 AK307529 BX538131 EU832512 EU832593	24772	+	TSC_hg19_v1_chr5_+_134240808 BC054021 AL136721 NM_032151	55505	+	BX648529|C5orf24|134553|chromosome 5 open reading frame 24##AJ437658|C5orf24|134553|chromosome 5 open reading frame 24##NM_001135586|C5orf24|134553|chromosome 5 open reading frame 24##AK094881|C5orf24|134553|chromosome 5 open reading frame 24##BC053677|C5orf24|134553|chromosome 5 open reading frame 24##NM_152409|C5orf24|134553|chromosome 5 open reading frame 24##AK056512|TXNDC15|79770|thioredoxin domain containing 15##NM_024715|TXNDC15|79770|thioredoxin domain containing 15##BC001615|TXNDC15|79770|thioredoxin domain containing 15##AK026278|TXNDC15|79770|thioredoxin domain containing 15##AK225454|TXNDC15|79770|thioredoxin domain containing 15##AK225462|TXNDC15|79770|thioredoxin domain containing 15##BC032568|TXNDC15|79770|thioredoxin domain containing 15##AK307529|TXNDC15|79770|thioredoxin domain containing 15##BX538131|TXNDC15|79770|thioredoxin domain containing 15##EU832512|TXNDC15|79770|thioredoxin domain containing 15##EU832593|TXNDC15|79770|thioredoxin domain containing 15##BC054021|PCBD2|84105|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2##AL136721|PCBD2|84105|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2##NM_032151|PCBD2|84105|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	1.919016	0.0	denovo_WM_7:62:0.936
chr13	114843415	114843525	reg1009528.p1	5.387	+	TSC_hg19_v1_chr13_-_114567041 NM_000820	-276427	-	TSC_hg19_v1_chr13_-_114567037 BC030708	-276434	-	TSC_hg19_v1_chr13_-_114567011 BC038984 L13720	-276449	-	AB385165 TSC_hg19_v1_chr13_-_114898005 AK289746 X89399	54516	-	TSC_hg19_v1_chr13_-_114898028 AK295861 AK313795	54555	-	TSC_hg19_v1_chr13_-_114898058 AK128094	54596	-	NM_000820|GAS6|2621|growth arrest-specific 6##BC030708|GAS6|2621|growth arrest-specific 6##BC038984|GAS6|2621|growth arrest-specific 6##L13720|GAS6|2621|growth arrest-specific 6##AK289746|RASA3|22821|RAS p21 protein activator 3##X89399|RASA3|22821|RAS p21 protein activator 3##AK295861|RASA3|22821|RAS p21 protein activator 3##AK313795|RASA3|22821|RAS p21 protein activator 3##AK128094|RASA3|22821|RAS p21 protein activator 3	0.985	0.0	denovo_WM_7:5:0.475	denovo_WM_7:6:0.475
chr7	106193367	106193502	reg1007811.p1	5.387	+	BC072439 TSC_hg19_v1_chr7_-_105925430 BC106046 NM_005746	-267911	-	AB590725 CU687232 U02020 BC020691 TSC_hg19_v1_chr7_-_105925367 AK292851 AK304085	-268072	-	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	-440419	-	AK093350 AX748070 BC013906 TSC_hg19_v1_chr7_-_106301480 NM_175884	108069	-	TSC_hg19_v1_chr7_+_106505701 AK292684	312279	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	312340	+	BC072439|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC106046|NAMPT|10135|nicotinamide phosphoribosyltransferase##NM_005746|NAMPT|10135|nicotinamide phosphoribosyltransferase##U02020|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC020691|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK292851|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK304085|NAMPT|10135|nicotinamide phosphoribosyltransferase##EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1##AK093350|C7orf74|168455|chromosome 7 open reading frame 74##BC013906|C7orf74|168455|chromosome 7 open reading frame 74##NM_175884|C7orf74|168455|chromosome 7 open reading frame 74##AK292684|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide	0.0	0.0	
chr16	13530739	13530919	reg1009127.p1	5.386	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-535361	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-633110	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-633178	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	483202	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	634257	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	749689	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.0	0.0	
chr14	24640331	24640464	reg1011055.p1	5.385	+	NM_006084 TSC_hg19_v1_chr14_+_24630473 AK308347 AK295467 M87503	-9921	+	TSC_hg19_v1_chr14_+_24616708 AK000973 AK225832 BC012077	-23675	+	NM_017999 TSC_hg19_v1_chr14_+_24616706 AK291247	-23715	+	TSC_hg19_v1_chr14_+_24641084 AK291191	695	+	TSC_hg19_v1_chr14_+_24641288 AK001435 NM_001048205 NM_005132 BC010887 AL832973	876	+	TSC_hg19_v1_chr14_-_24658004 AF411122 AK057044 AK056702 AK094897 AK314305 BX248267	17600	-	NM_006084|IRF9|10379|interferon regulatory factor 9##AK308347|IRF9|10379|interferon regulatory factor 9##AK295467|IRF9|10379|interferon regulatory factor 9##M87503|IRF9|10379|interferon regulatory factor 9##AK000973|RNF31|55072|ring finger protein 31##AK225832|RNF31|55072|ring finger protein 31##BC012077|RNF31|55072|ring finger protein 31##NM_017999|RNF31|55072|ring finger protein 31##AK291247|RNF31|55072|ring finger protein 31##AK291191|REC8|9985|REC8 homolog (yeast)##AK001435|REC8|9985|REC8 homolog (yeast)##NM_001048205|REC8|9985|REC8 homolog (yeast)##NM_005132|REC8|9985|REC8 homolog (yeast)##BC010887|REC8|9985|REC8 homolog (yeast)##AL832973|REC8|9985|REC8 homolog (yeast)##AF411122|IPO4|79711|importin 4##AK057044|IPO4|79711|importin 4##AK056702|IPO4|79711|importin 4##AK094897|IPO4|79711|importin 4##AK314305|IPO4|79711|importin 4##BX248267|IPO4|79711|importin 4	2.991036	0.0	denovo_WM_7:-23:0.248	denovo_WM_7:-24:0.248	denovo_WM_7:-25:0.248	denovo_WM_7:-26:0.248	denovo_WM_7:33:0.872
chr14	64685744	64685895	reg1007674.p2	5.385	+	NM_182910	-3148	+	NM_182913 AY061758 AK297874	-4942	+	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	-366124	+	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	63844	-	AF051427 AF051428 AF060555 NM_001040275 NM_001437	75283	-	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	119539	-	NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)##AF051427|ESR2|2100|estrogen receptor 2 (ER beta)##AF051428|ESR2|2100|estrogen receptor 2 (ER beta)##AF060555|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001040275|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001437|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)	1.024165	0.0	
chr16	11837027	11837135	reg1008793.p1	5.385	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-425	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-74783	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-156292	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	53970	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	54034	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	108323	-	AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1	0.98044	0.0	denovo_WM_7:40:0.919
chr13	99953836	99953987	reg1008673.p1	5.384	+	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-43297	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-100792	+	TSC_hg19_v1_chr13_-_99852951 BC043515 AK097488	-100944	-	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	5787	-	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	199789	+	TSC_hg19_v1_chr13_+_100153777 BC130293	199871	+	AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC043515|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK097488|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.975385	0.0	denovo_WM_7:-5:0.499	denovo_WM_7:-6:0.201
chr16	56769705	56769813	reg1007434.p1	5.384	+	TSC_hg19_v1_chr16_+_56764089 D42085 AF086282 BC034346 AK292262	-5674	+	NM_014669 TSC_hg19_v1_chr16_+_56764040	-5728	+	TSC_hg19_v1_chr16_+_56716381 AK311284 AK311373 NM_005952 BC032131 BC032338 BC018190 BC053882 BC029916 X76717 AB528765 S68956	-53344	+	NM_001242795 AK056637 TSC_hg19_v1_chr16_+_56815740	45976	+	AK294176 NM_001242796	47630	+	AK315298 NM_000339 NM_001126107 NM_001126108 AK223133 X91220 U44128 AB463268	129373	+	D42085|NUP93|9688|nucleoporin 93kDa##AF086282|NUP93|9688|nucleoporin 93kDa##BC034346|NUP93|9688|nucleoporin 93kDa##AK292262|NUP93|9688|nucleoporin 93kDa##NM_014669|NUP93|9688|nucleoporin 93kDa##NM_005952|MT1X|4501|metallothionein 1X##BC032131|MT1X|4501|metallothionein 1X##BC032338|MT1X|4501|metallothionein 1X##BC018190|MT1X|4501|metallothionein 1X##BC053882|MT1X|4501|metallothionein 1X##BC029916|MT1X|4501|metallothionein 1X##X76717|MT1X|4501|metallothionein 1X##S68956|MT1X|4501|metallothionein 1X##NM_001242795|NUP93|9688|nucleoporin 93kDa##AK056637|NUP93|9688|nucleoporin 93kDa##AK294176|NUP93|9688|nucleoporin 93kDa##NM_001242796|NUP93|9688|nucleoporin 93kDa##AK315298|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##NM_000339|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##NM_001126107|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##NM_001126108|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##AK223133|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##X91220|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3##U44128|SLC12A3|6559|solute carrier family 12 (sodium/chloride transporters), member 3	0.991958	0.0	denovo_WM_7:-10:0.837
chr2	101011302	101011403	reg1007090.p2	5.384	+	DQ020495 NM_198461	-72158	-	BC036895 TSC_hg19_v1_chr2_-_100759026 NM_002285	-252349	-	TSC_hg19_v1_chr2_-_100722359 AK297407 AK092327 AX747484	-288894	-	TSC_hg19_v1_chr2_-_101034114 BC010441 AF033827 NM_004854	22745	-	AB164464 NM_001011717	75591	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	168084	+	DQ020495|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##NM_198461|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##BC036895|AFF3|3899|AF4/FMR2 family, member 3##NM_002285|AFF3|3899|AF4/FMR2 family, member 3##AK297407|AFF3|3899|AF4/FMR2 family, member 3##AK092327|AFF3|3899|AF4/FMR2 family, member 3##BC010441|CHST10|9486|carbohydrate sulfotransferase 10##AF033827|CHST10|9486|carbohydrate sulfotransferase 10##NM_004854|CHST10|9486|carbohydrate sulfotransferase 10##AB164464|NMS|129521|neuromedin S##NM_001011717|NMS|129521|neuromedin S##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3	0.995193	0.0	denovo_WM_7:5:0.342	denovo_WM_7:6:0.591
chr1	212965146	212965262	reg1009585.p1	5.383	+	AB528354 CU675531 DQ892899 DQ896149 AK222996 AF201941 TSC_hg19_v1_chr1_-_212965111 BC007067 AK223260 AK303250 BC036048 AF255793 AK313730 NM_001042549 NM_015471	-83	-	TSC_hg19_v1_chr1_-_212873317 AF255346 NM_018664	-91884	-	TSC_hg19_v1_chr1_-_212873221 BC117489 BC117491	-91974	-	AK293129 NM_001042552 NM_001042553 NM_001146169 NM_001146170 NM_001146171 AK304557 TSC_hg19_v1_chr1_+_212965255 BC113638 BC117485 BC143956 BC143957 AL832248 BC048115 HQ258161	14	+	AY640234 BC035742 NM_001024601	55764	-	TSC_hg19_v1_chr1_-_213031441 AY030238 AY030239 AK092887	66260	-	DQ892899|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##DQ896149|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK222996|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF201941|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC007067|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK223260|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK303250|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC036048|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255793|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK313730|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001042549|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_015471|NSL1|25936|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)##AF255346|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##NM_018664|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##BC117489|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##BC117491|BATF3|55509|basic leucine zipper transcription factor, ATF-like 3##AK293129|TATDN3|128387|TatD DNase domain containing 3##NM_001042552|TATDN3|128387|TatD DNase domain containing 3##NM_001042553|TATDN3|128387|TatD DNase domain containing 3##NM_001146169|TATDN3|128387|TatD DNase domain containing 3##NM_001146170|TATDN3|128387|TatD DNase domain containing 3##NM_001146171|TATDN3|128387|TatD DNase domain containing 3##AK304557|TATDN3|128387|TatD DNase domain containing 3##BC113638|TATDN3|128387|TatD DNase domain containing 3##BC117485|TATDN3|128387|TatD DNase domain containing 3##BC143956|TATDN3|128387|TatD DNase domain containing 3##BC143957|TATDN3|128387|TatD DNase domain containing 3##AL832248|TATDN3|128387|TatD DNase domain containing 3##BC048115|TATDN3|128387|TatD DNase domain containing 3##HQ258161|TATDN3|128387|TatD DNase domain containing 3##AY640234|C1orf227|149643|chromosome 1 open reading frame 227##BC035742|C1orf227|149643|chromosome 1 open reading frame 227##NM_001024601|C1orf227|149643|chromosome 1 open reading frame 227##AY030238|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY030239|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)	0.0	0.0	
chr17	70420380	70420510	reg1007113.p1	5.383	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-303205	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-303275	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-303286	+	AK000477 TSC_hg19_v1_chr17_-_70588944	168498	-	AF331643 TSC_hg19_v1_chr17_-_71088816	668371	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	668378	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	1.979815	0.0	denovo_WM_7:26:0.215	denovo_WM_7:27:0.622	denovo_WM_7:42:0.654
chr2	210937756	210937896	reg1013225.p1	5.383	+	BC016764 TSC_hg19_v1_chr2_+_210867366 AK093658 AX748246 AK291035 AK303184 AL833120 AK096199 AK308741 BC072401 BC005148 NM_199229 AB528699 EU831915 EU832009	-70456	+	TSC_hg19_v1_chr2_+_210867347 BC063135 AK056028 NM_006916	-70490	+	TSC_hg19_v1_chr2_+_210636732 BC136690 BC136693	-301090	+	TSC_hg19_v1_chr2_-_211018294 AK074441 BC070141	80515	-	AK124963 TSC_hg19_v1_chr2_-_211035462	97594	-	TSC_hg19_v1_chr2_-_211036099 BC126155 BC143914 BC032837 NM_152519 AK308432	98224	-	BC016764|RPE|6120|ribulose-5-phosphate-3-epimerase##AK093658|RPE|6120|ribulose-5-phosphate-3-epimerase##AK291035|RPE|6120|ribulose-5-phosphate-3-epimerase##AK303184|RPE|6120|ribulose-5-phosphate-3-epimerase##AL833120|RPE|6120|ribulose-5-phosphate-3-epimerase##AK096199|RPE|6120|ribulose-5-phosphate-3-epimerase##AK308741|RPE|6120|ribulose-5-phosphate-3-epimerase##BC072401|RPE|6120|ribulose-5-phosphate-3-epimerase##BC005148|RPE|6120|ribulose-5-phosphate-3-epimerase##NM_199229|RPE|6120|ribulose-5-phosphate-3-epimerase##EU831915|RPE|6120|ribulose-5-phosphate-3-epimerase##EU832009|RPE|6120|ribulose-5-phosphate-3-epimerase##BC063135|RPE|6120|ribulose-5-phosphate-3-epimerase##AK056028|RPE|6120|ribulose-5-phosphate-3-epimerase##NM_006916|RPE|6120|ribulose-5-phosphate-3-epimerase##BC136690|UNC80|285175|unc-80 homolog (C. elegans)##BC136693|UNC80|285175|unc-80 homolog (C. elegans)##AK074441|C2orf67|151050|chromosome 2 open reading frame 67##BC070141|C2orf67|151050|chromosome 2 open reading frame 67##AK124963|C2orf67|151050|chromosome 2 open reading frame 67##BC126155|C2orf67|151050|chromosome 2 open reading frame 67##BC143914|C2orf67|151050|chromosome 2 open reading frame 67##BC032837|C2orf67|151050|chromosome 2 open reading frame 67##NM_152519|C2orf67|151050|chromosome 2 open reading frame 67##AK308432|C2orf67|151050|chromosome 2 open reading frame 67	0.0	0.016091	
chr9	119423465	119423595	reg1011751.p1	5.383	+	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	-507460	+	AB022761 NM_017418	-1519434	+	AB210038 TSC_hg19_v1_chr9_-_117880433 AK304015 X78565 NM_002160	-1543057	-	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	25932	-	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	26076	+	TSC_hg19_v1_chr9_-_120177318 AB014534 BC146756 NM_014010	753783	-	NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##AB022761|DEC1|50514|deleted in esophageal cancer 1##NM_017418|DEC1|50514|deleted in esophageal cancer 1##AB210038|TNC|3371|tenascin C##AK304015|TNC|3371|tenascin C##X78565|TNC|3371|tenascin C##NM_002160|TNC|3371|tenascin C##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32##AB014534|ASTN2|23245|astrotactin 2##BC146756|ASTN2|23245|astrotactin 2##NM_014010|ASTN2|23245|astrotactin 2	0.0	0.803863	CTCF.p2:3:0.804
chr2	54787818	54787987	reg1000990.p2	5.382	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-2337	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-103535	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-104290	+	NM_001039753	164246	+	TSC_hg19_v1_chr2_-_55199899 BC131571	412006	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	449470	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	0.0	0.0	
chr12	122053112	122053242	reg1008656.p2	5.381	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-34263	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-34918	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-148103	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	11466	+	BC057760 NM_173855	54382	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	97567	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	1.770407	0.0	denovo_WM_7:0:0.258	denovo_WM_7:-4:0.425	denovo_WM_7:18:0.315	denovo_WM_7:19:0.315	denovo_WM_7:20:0.315
chr16	58306878	58307058	reg1010242.p2	5.381	+	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	-23100	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	-75257	-	TSC_hg19_v1_chr16_-_58163286 NM_013242	-143658	-	AK302175 AK058068 BC057843 NM_001080492	21946	-	NM_001126129 NM_001126130 NM_022770 TSC_hg19_v1_chr16_+_58426340 AK315622 AK023974 BC014437 BC005879 CR457283	119433	+	NM_020465 TSC_hg19_v1_chr16_+_58497607	190612	+	AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_013242|C16orf80|29105|chromosome 16 open reading frame 80##AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54##NM_001126129|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_001126130|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_022770|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK315622|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK023974|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC014437|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC005879|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##CR457283|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_020465|NDRG4|65009|NDRG family member 4	0.454245	0.0	denovo_WM_7:-68:0.235
chr17	49173695	49173822	reg1009869.p1	5.381	+	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-49530	-	AK313904 NM_001243877	-228420	-	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	-230062	-	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	24397	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	57153	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	57174	+	BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	1.06463	0.0	denovo_WM_7:-41:0.696
chr2	33808420	33808539	reg1009530.p2	5.381	+	AB020653 NM_015376	-69538	+	TSC_hg19_v1_chr2_+_33701715 BX647990	-106783	+	NM_001139488	-107159	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	15866	-	TSC_hg19_v1_chr2_+_36582920 AY358371	2774483	+	AB209139 NM_016441 AF167706 BC111989 BC113371 AB384861	2774923	+	AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AB209139|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##NM_016441|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF167706|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC111989|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC113371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)	0.0	0.020513	
chr6	52255076	52255255	reg1001615.p1	5.381	+	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	-28208	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-105586	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-105645	-	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	29913	+	AK297632 NM_001172420	30639	+	DQ891068 DQ894250 D31762 TSC_hg19_v1_chr6_-_52441798	186593	-	NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ891068|TRAM2|9697|translocation associated membrane protein 2##DQ894250|TRAM2|9697|translocation associated membrane protein 2##D31762|TRAM2|9697|translocation associated membrane protein 2	0.0	0.0	
chr9	112006857	112007037	reg1008658.p2	5.381	+	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	-77418	-	TSC_hg19_v1_chr9_-_111882212 BC142984 AF153415 NM_032012	-124727	-	TSC_hg19_v1_chr9_-_111882206 AK299952	-124742	-	TSC_hg19_v1_chr9_-_112083007 AF153416 AF153418 NM_018424 NM_019114	76065	-	TSC_hg19_v1_chr9_-_112083330 AB032179	76343	-	AK296265 AK296388 AK316118 NM_001145371 NM_001145372	184266	-	AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4##AF153415|C9orf5|23731|chromosome 9 open reading frame 5##NM_032012|C9orf5|23731|chromosome 9 open reading frame 5##AK299952|C9orf5|23731|chromosome 9 open reading frame 5##AF153416|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153418|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_018424|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_019114|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AB032179|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AK296265|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK296388|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316118|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145371|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145372|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	0.0	0.993928	CTCF.p2:54:0.994
chr14	97848998	97849178	reg1005153.p1	5.380	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-585373	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-880304	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-880342	+	AK098639 NM_182560	1328861	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1888529	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1888802	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.0	0.010937	
chr17	36121109	36121244	reg1006080.p1	5.380	+	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	-16125	-	AB528419 BT007126 CR536572 DQ891528 EU176615 TSC_hg19_v1_chr17_-_36104898	-16290	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	-117699	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	162817	+	BC033670 BC047739 AL136860 AK301823 BC071680 BC078140 AK302064 AK313329 NM_001123391 NM_032258	227449	-	BC067792 TSC_hg19_v1_chr17_-_36413224	292061	-	HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##BT007126|HNF1B|6928|HNF1 homeobox B##CR536572|HNF1B|6928|HNF1 homeobox B##DQ891528|HNF1B|6928|HNF1 homeobox B##EU176615|HNF1B|6928|HNF1 homeobox B##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##AK302064|TBC1D3|729873|TBC1 domain family, member 3##AK313329|TBC1D3|729873|TBC1 domain family, member 3##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##BC067792|LOC440434|440434|aminopeptidase puromycin sensitive pseudogene	0.997701	0.0	denovo_WM_7:-50:0.760
chr15	98985779	98985877	reg1008152.p1	5.379	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	-481877	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	-481909	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-1659156	+	AK097062 AK097062 NM_182562	71782	-	TSC_hg19_v1_chr15_+_99191767 AB425196	206143	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	206928	+	BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor	0.0	0.165101	
chr2	70297998	70298145	reg1006849.p1	5.379	+	AK055994 NM_152792	-108675	-	TSC_hg19_v1_chr2_+_70142307 L06895 BC113531 BC117260 BC143831 BC143832 BC144601 BC069377 BC069433 AB463858 CR536495 CR541692 CU686788 HQ258749	-155689	+	TSC_hg19_v1_chr2_+_70142240 AK301088 AK312734	-155821	+	TSC_hg19_v1_chr2_-_70313405 AK056822	15337	-	TSC_hg19_v1_chr2_-_70314146 BC040598	16042	-	TSC_hg19_v1_chr2_+_70314613 NM_006196	16523	+	AK055994|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_152792|ASPRV1|151516|aspartic peptidase, retroviral-like 1##L06895|MXD1|4084|MAX dimerization protein 1##BC113531|MXD1|4084|MAX dimerization protein 1##BC117260|MXD1|4084|MAX dimerization protein 1##BC143831|MXD1|4084|MAX dimerization protein 1##BC143832|MXD1|4084|MAX dimerization protein 1##BC144601|MXD1|4084|MAX dimerization protein 1##BC069377|MXD1|4084|MAX dimerization protein 1##BC069433|MXD1|4084|MAX dimerization protein 1##CR536495|MXD1|4084|MAX dimerization protein 1##CR541692|MXD1|4084|MAX dimerization protein 1##HQ258749|MXD1|4084|MAX dimerization protein 1##AK301088|MXD1|4084|MAX dimerization protein 1##AK312734|MXD1|4084|MAX dimerization protein 1##AK056822|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##BC040598|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##NM_006196|PCBP1|5093|poly(rC) binding protein 1	0.0	0.0	
chr5	175993007	175993127	reg1008254.p1	5.379	+	NM_017675	-16725	+	AK315055 NM_001171976	-23556	+	TSC_hg19_v1_chr5_-_175964932 AK302385	-28143	-	TSC_hg19_v1_chr5_-_176037158 BC052950 NM_052899 AB067480	44070	-	S69965 BC002902 TSC_hg19_v1_chr5_-_176057536 JF960950 JF960951 JF960952 JF960953 NM_001001502 NM_003085	64389	-	NM_001099408	64615	+	NM_017675|CDHR2|54825|cadherin-related family member 2##AK315055|CDHR2|54825|cadherin-related family member 2##NM_001171976|CDHR2|54825|cadherin-related family member 2##AK302385|RNF44|22838|ring finger protein 44##BC052950|GPRIN1|114787|G protein regulated inducer of neurite outgrowth 1##NM_052899|GPRIN1|114787|G protein regulated inducer of neurite outgrowth 1##AB067480|GPRIN1|114787|G protein regulated inducer of neurite outgrowth 1##S69965|SNCB|6620|synuclein, beta##BC002902|SNCB|6620|synuclein, beta##JF960950|SNCB|6620|synuclein, beta##JF960951|SNCB|6620|synuclein, beta##JF960952|SNCB|6620|synuclein, beta##JF960953|SNCB|6620|synuclein, beta##NM_001001502|SNCB|6620|synuclein, beta##NM_003085|SNCB|6620|synuclein, beta##NM_001099408|EIF4E1B|253314|eukaryotic translation initiation factor 4E family member 1B	0.999459	0.0	denovo_WM_7:36:0.975
chr11	15962166	15962328	reg1007882.p1	5.378	+	AB236158 NM_001042536	-825764	+	AB236159 NM_001031853	-828278	+	BC008428 AK291188 BC092468 NM_000728	-867121	+	AL136780 AK310506 BC047064 NM_001145819 NM_017508	462154	-	BC037866 NM_001145811	468180	-	AF309034 NM_033326	535678	-	AB236158|INSC|387755|inscuteable homolog (Drosophila)##NM_001042536|INSC|387755|inscuteable homolog (Drosophila)##AB236159|INSC|387755|inscuteable homolog (Drosophila)##NM_001031853|INSC|387755|inscuteable homolog (Drosophila)##BC008428|CALCB|797|calcitonin-related polypeptide beta##AK291188|CALCB|797|calcitonin-related polypeptide beta##BC092468|CALCB|797|calcitonin-related polypeptide beta##NM_000728|CALCB|797|calcitonin-related polypeptide beta##AL136780|SOX6|55553|SRY (sex determining region Y)-box 6##AK310506|SOX6|55553|SRY (sex determining region Y)-box 6##BC047064|SOX6|55553|SRY (sex determining region Y)-box 6##NM_001145819|SOX6|55553|SRY (sex determining region Y)-box 6##NM_017508|SOX6|55553|SRY (sex determining region Y)-box 6##BC037866|SOX6|55553|SRY (sex determining region Y)-box 6##NM_001145811|SOX6|55553|SRY (sex determining region Y)-box 6##AF309034|SOX6|55553|SRY (sex determining region Y)-box 6##NM_033326|SOX6|55553|SRY (sex determining region Y)-box 6	0.0	0.0	
chr19	58459780	58459928	reg1008629.p2	5.378	+	TSC_hg19_v1_chr19_-_58459075 BC001438 AK314094 NM_005773	-792	-	AK056113 AY695825 NM_133460 AK304632 AK293723	-13108	-	TSC_hg19_v1_chr19_-_58427961 BC025783 AK293789 BC103757 NM_152475	-31882	-	BC033933 NM_152474	26047	-	AK094748 TSC_hg19_v1_chr19_+_58513574	53648	+	TSC_hg19_v1_chr19_-_58514188 BC022533 BC036570 AK293097 AK056696 AK294037 BC037209	54317	-	BC001438|ZNF256|10172|zinc finger protein 256##AK314094|ZNF256|10172|zinc finger protein 256##NM_005773|ZNF256|10172|zinc finger protein 256##AK056113|ZNF418|147686|zinc finger protein 418##AY695825|ZNF418|147686|zinc finger protein 418##NM_133460|ZNF418|147686|zinc finger protein 418##AK304632|ZNF418|147686|zinc finger protein 418##AK293723|ZNF418|147686|zinc finger protein 418##BC025783|ZNF417|147687|zinc finger protein 417##AK293789|ZNF417|147687|zinc finger protein 417##BC103757|ZNF417|147687|zinc finger protein 417##NM_152475|ZNF417|147687|zinc finger protein 417##BC033933|C19orf18|147685|chromosome 19 open reading frame 18##NM_152474|C19orf18|147685|chromosome 19 open reading frame 18##AK094748|LOC100128398|100128398|uncharacterized LOC100128398##BC022533|ZNF606|80095|zinc finger protein 606##BC036570|ZNF606|80095|zinc finger protein 606##AK293097|ZNF606|80095|zinc finger protein 606##AK056696|ZNF606|80095|zinc finger protein 606##AK294037|ZNF606|80095|zinc finger protein 606##BC037209|ZNF606|80095|zinc finger protein 606	2.032037	0.0	denovo_WM_7:-47:0.540	denovo_WM_7:-48:0.270	denovo_WM_7:-62:0.329	denovo_WM_7:-63:0.599
chr2	223518128	223518279	reg1008448.p1	5.378	+	TSC_hg19_v1_chr2_+_223289285 AF542512 BC134342 NM_152386 BC106905 BC114513 BC106904	-228896	+	TSC_hg19_v1_chr2_+_223289261 AK314322	-228963	+	CU687758 EU446645 AY251279 AY251280 S69369 S69370 BC008826 BC063547 BC101299 BC101300 BC101301 BC101302 BC114363 TSC_hg19_v1_chr2_-_223163712 AK291278 NM_000438 NM_001127366 NM_013942 NM_181457 NM_181458 NM_181459 NM_181460 NM_181461	-354678	-	TSC_hg19_v1_chr2_-_223520807 AK294158 BC006502 AF042346 CU676064 BC011261 AK001025 BC008434 BC017783 D84430 AK316497 AK291531 AF161521 BC022273 NM_005687	2591	-	TSC_hg19_v1_chr2_+_223536376 AF384163 NM_058165	18206	+	TSC_hg19_v1_chr2_+_223725753 NM_004457 NM_203372 BC041692 AK314621 AB061712	207544	+	AF542512|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC134342|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_152386|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106905|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC114513|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106904|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##AK314322|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##EU446645|PAX3|5077|paired box 3##AY251279|PAX3|5077|paired box 3##AY251280|PAX3|5077|paired box 3##S69369|PAX3|5077|paired box 3##S69370|PAX3|5077|paired box 3##BC063547|PAX3|5077|paired box 3##BC101299|PAX3|5077|paired box 3##BC101300|PAX3|5077|paired box 3##BC101301|PAX3|5077|paired box 3##BC101302|PAX3|5077|paired box 3##BC114363|PAX3|5077|paired box 3##AK291278|PAX3|5077|paired box 3##NM_000438|PAX3|5077|paired box 3##NM_001127366|PAX3|5077|paired box 3##NM_013942|PAX3|5077|paired box 3##NM_181457|PAX3|5077|paired box 3##NM_181458|PAX3|5077|paired box 3##NM_181459|PAX3|5077|paired box 3##NM_181460|PAX3|5077|paired box 3##NM_181461|PAX3|5077|paired box 3##AK294158|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC006502|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF042346|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC011261|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK001025|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC008434|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC017783|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##D84430|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK316497|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK291531|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF161521|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC022273|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##NM_005687|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF384163|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##NM_058165|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##NM_004457|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_203372|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##BC041692|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AK314621|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AB061712|ACSL3|2181|acyl-CoA synthetase long-chain family member 3	1.480347	0.0	denovo_WM_7:-45:0.568	denovo_WM_7:-46:0.297	denovo_WM_7:-73:0.413
chr2	232264777	232264898	reg1008280.p1	5.378	+	AF502430 NM_145236 TSC_hg19_v1_chr2_+_232260454 AK126207 AB528076	-4415	+	TSC_hg19_v1_chr2_+_232120778 AB055779	-144059	+	TSC_hg19_v1_chr2_+_232063410 AY929062	-201443	+	AK001314 TSC_hg19_v1_chr2_-_232326464	61592	-	AB385068 CU677918 AK000221 TSC_hg19_v1_chr2_-_232329196 AK091742 AK095897 AK122805 AX747156 NM_005381 AK127608	64298	-	BC002343 BC006494 BC006516 TSC_hg19_v1_chr2_-_232329226	64398	-	AF502430|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##NM_145236|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK126207|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AY929062|ARMC9|80210|armadillo repeat containing 9##AK001314|NCL|4691|nucleolin##AK000221|NCL|4691|nucleolin##AK091742|NCL|4691|nucleolin##AK095897|NCL|4691|nucleolin##AK122805|NCL|4691|nucleolin##NM_005381|NCL|4691|nucleolin##AK127608|NCL|4691|nucleolin##BC002343|NCL|4691|nucleolin##BC006494|NCL|4691|nucleolin##BC006516|NCL|4691|nucleolin	0.999685	0.0	
chr8	37247890	37248068	reg1000210.p1	5.378	+	NM_001031836 AK302391 BC028701	-606109	+	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	-2154992	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-3790484	-	TSC_hg19_v1_chr8_-_37457377 AK025743	209389	-	TSC_hg19_v1_chr8_+_37553300 AK024361 NM_025069 BC032534	305338	+	TSC_hg19_v1_chr8_+_37594112 NM_001003791 NM_007175 AL442077	346127	+	NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK025743|LOC157860|157860|uncharacterized LOC157860##AK024361|ZNF703|80139|zinc finger protein 703##NM_025069|ZNF703|80139|zinc finger protein 703##BC032534|ZNF703|80139|zinc finger protein 703##NM_001003791|ERLIN2|11160|ER lipid raft associated 2##NM_007175|ERLIN2|11160|ER lipid raft associated 2##AL442077|ERLIN2|11160|ER lipid raft associated 2	0.073373	0.0	
chr8	91491563	91491683	reg1005485.p1	5.378	+	AB529128 X06661 BC006478 AK054881 AK312491 BC020864 NM_004929	-396608	-	NM_001359 BC105080 BC105082 BC143669 TSC_hg19_v1_chr8_+_91013704 AK300069 L26050	-477974	+	TSC_hg19_v1_chr8_-_90996896 AK001017 AK289848 BC071590 BC040519 BX640816 NM_002485 AK312410	-494719	-	AK300583 AK123958 AL834364 TSC_hg19_v1_chr8_-_91657856	166175	-	TSC_hg19_v1_chr8_-_91657970 AY147881 NM_001008495 NM_001146273	166392	-	AF414126 TSC_hg19_v1_chr8_+_91803956 NM_022351 AK095533 BC068448 AY224210	312322	+	X06661|CALB1|793|calbindin 1, 28kDa##BC006478|CALB1|793|calbindin 1, 28kDa##AK054881|CALB1|793|calbindin 1, 28kDa##AK312491|CALB1|793|calbindin 1, 28kDa##BC020864|CALB1|793|calbindin 1, 28kDa##NM_004929|CALB1|793|calbindin 1, 28kDa##NM_001359|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105080|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105082|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC143669|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK300069|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##L26050|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK001017|NBN|4683|nibrin##AK289848|NBN|4683|nibrin##BC071590|NBN|4683|nibrin##BC040519|NBN|4683|nibrin##BX640816|NBN|4683|nibrin##NM_002485|NBN|4683|nibrin##AK312410|NBN|4683|nibrin##AK300583|TMEM64|169200|transmembrane protein 64##AK123958|TMEM64|169200|transmembrane protein 64##AL834364|TMEM64|169200|transmembrane protein 64##AY147881|TMEM64|169200|transmembrane protein 64##NM_001008495|TMEM64|169200|transmembrane protein 64##NM_001146273|TMEM64|169200|transmembrane protein 64##AF414126|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##NM_022351|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AK095533|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##BC068448|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AY224210|NECAB1|64168|N-terminal EF-hand calcium binding protein 1	0.987605	0.0	denovo_WM_7:9:0.949
chr12	102915881	102916061	reg1008709.p2	5.377	+	AB209184 NM_000618 NM_001111283 NM_001111285 TSC_hg19_v1_chr12_-_102874389	-41589	-	M11568 TSC_hg19_v1_chr12_-_102874344	-41629	-	AK312231 X57025 TSC_hg19_v1_chr12_-_102874323	-41649	-	TSC_hg19_v1_chr12_-_103310998 CU693178 AK298419 AK313383	394995	-	TSC_hg19_v1_chr12_-_103311062 BC026251	395092	-	L47726 NM_000277 U49897	395409	-	AB209184|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_000618|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111283|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111285|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##M11568|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK312231|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X57025|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK298419|PAH|5053|phenylalanine hydroxylase##AK313383|PAH|5053|phenylalanine hydroxylase##BC026251|PAH|5053|phenylalanine hydroxylase##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase	0.997	0.0	
chr7	110162941	110163095	reg1006025.p2	5.377	+	NM_001024607	-1638382	-	TSC_hg19_v1_chr7_+_108210317 AL080081 AB026908 AF083247 BC028912 AF115512 AF093824	-1952644	+	TSC_hg19_v1_chr7_+_108210292 AK092204	-1952720	+	NM_001099658 NM_001099660 NM_018334 AK001991 BC035133 TSC_hg19_v1_chr7_+_110731182	568105	+	AF359563 NM_032549 TSC_hg19_v1_chr7_-_111202539 AK311968 BC008497 NM_001244606	1039466	-	TSC_hg19_v1_chr7_-_111428948 AK294820	1265993	-	NM_001024607|C7orf66|154907|chromosome 7 open reading frame 66##AL080081|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AB026908|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF083247|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##BC028912|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF093824|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AK092204|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##NM_001099658|LRRN3|54674|leucine rich repeat neuronal 3##NM_001099660|LRRN3|54674|leucine rich repeat neuronal 3##NM_018334|LRRN3|54674|leucine rich repeat neuronal 3##AK001991|LRRN3|54674|leucine rich repeat neuronal 3##BC035133|LRRN3|54674|leucine rich repeat neuronal 3##AF359563|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_032549|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK311968|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC008497|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001244606|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK294820|DOCK4|9732|dedicator of cytokinesis 4	0.981833	0.0	denovo_WM_7:-52:0.415	denovo_WM_7:-53:0.415
chr7	138339523	138339618	reg1008787.p1	5.377	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	-194334	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	-194578	+	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	-578352	+	BC036796 NM_174959	9398	-	NM_001139456	24219	-	NM_130841	119211	-	AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC036796|SVOPL|136306|SVOP-like##NM_174959|SVOPL|136306|SVOP-like##NM_001139456|SVOPL|136306|SVOP-like##NM_130841|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4	1.934573	0.0	denovo_WM_7:51:0.431	denovo_WM_7:52:0.418	denovo_WM_7:67:0.776
chr1	143950512	143950683	reg1009557.p1	5.376	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-37467	-	HQ258079 BC130376 BC130378 NM_001123068	-182733	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-206192	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	413627	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	570334	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	570409	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	1.137384	0.0	denovo_WM_7:-92:0.217
chr12	110907160	110907340	reg1005316.p2	5.376	+	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-581	+	TSC_hg19_v1_chr12_+_110906585 AK309603 AK308802	-660	+	NM_001164372	-725	-	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	32660	-	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	32825	+	TSC_hg19_v1_chr12_-_111020755 AY357944	113543	-	CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AK309603|C12orf24|29902|chromosome 12 open reading frame 24##AK308802|C12orf24|29902|chromosome 12 open reading frame 24##NM_001164372|GPN3|51184|GPN-loop GTPase 3##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	1.006372	0.073369	denovo_WM_7:53:0.338	denovo_WM_7:57:0.350
chr19	40257264	40257444	reg1000412.p1	5.376	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-28715	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-62311	+	FJ613352 NM_001190441	-110809	+	NM_001143832	9879	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	67444	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	73937	-	FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613352|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001190441|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001143832|LEUTX|342900|leucine twenty homeobox##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin	0.0	0.011644	
chr3	105087638	105087772	reg1003455.p2	5.376	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-1883	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-2125	+	AY090780 NM_175056 BC143817	-2933838	+	CR749655 TSC_hg19_v1_chr3_-_105421064	333349	-	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	500102	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1871774	-	AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b	0.0	0.02479	
chr11	94206559	94206708	reg1006546.p1	5.375	+	TSC_hg19_v1_chr11_-_94134589 AK315161 NM_016540	-72051	-	NM_001199206	-167831	+	TSC_hg19_v1_chr11_+_93862307 AY359023 FM201789	-344313	+	U37359 TSC_hg19_v1_chr11_-_94227011 BC017823 BC005241 AK095388 AF022778 AK308318 NM_005590 NM_005591	20340	-	TSC_hg19_v1_chr11_+_94227168 NM_017704 AF025354 AK000196 BC017798 AK000448 AL833977	20525	+	NM_001190462	39061	+	AK315161|GPR83|10888|G protein-coupled receptor 83##NM_016540|GPR83|10888|G protein-coupled receptor 83##NM_001199206|FOLR4|390243|folate receptor 4 (delta) homolog (mouse)##AY359023|PANX1|24145|pannexin 1##FM201789|PANX1|24145|pannexin 1##U37359|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##BC017823|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##BC005241|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AK095388|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AF022778|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AK308318|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_005590|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_005591|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_017704|ANKRD49|54851|ankyrin repeat domain 49##AF025354|ANKRD49|54851|ankyrin repeat domain 49##AK000196|ANKRD49|54851|ankyrin repeat domain 49##BC017798|ANKRD49|54851|ankyrin repeat domain 49##AK000448|ANKRD49|54851|ankyrin repeat domain 49##AL833977|ANKRD49|54851|ankyrin repeat domain 49##NM_001190462|LOC643037|643037|uncharacterized LOC643037	0.32033	0.0	denovo_WM_7:11:0.320
chr12	50569106	50569273	reg1004132.p1	5.375	+	TSC_hg19_v1_chr12_-_50561153 AK298924	-7964	-	TSC_hg19_v1_chr12_-_50561112 AK026014	-8064	-	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	-8098	-	AK023649 AF157325 NM_001243775	26120	-	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	47267	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	108106	-	AK298924|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1	0.999249	0.0	
chr14	65673262	65673328	reg1008574.p1	5.375	+	TSC_hg19_v1_chr14_-_65569238 BC013669 NM_002382 NM_145112 NM_145113 NM_145114 NM_145116 NM_197957 AK290929 AL833643	-104057	-	AB463901 AY353088 CR542191 CU693010 X60287 M64240 AK292630 AK292189 BC003525 BC004516 AK290130 TSC_hg19_v1_chr14_-_65569205 BC036092 BC027924 BC025685	-104163	-	BC035148 BC052775 TSC_hg19_v1_chr14_+_65453967	-219329	+	AJ536056 NM_004480 NM_178155 NM_178156	204014	+	TSC_hg19_v1_chr14_+_65878582 BC142958 AK292413 AK294242 Y17976 Y17977	205325	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	206031	-	BC013669|MAX|4149|MYC associated factor X##NM_002382|MAX|4149|MYC associated factor X##NM_145112|MAX|4149|MYC associated factor X##NM_145113|MAX|4149|MYC associated factor X##NM_145114|MAX|4149|MYC associated factor X##NM_145116|MAX|4149|MYC associated factor X##NM_197957|MAX|4149|MYC associated factor X##AK290929|MAX|4149|MYC associated factor X##AL833643|MAX|4149|MYC associated factor X##AY353088|MAX|4149|MYC associated factor X##CR542191|MAX|4149|MYC associated factor X##X60287|MAX|4149|MYC associated factor X##M64240|MAX|4149|MYC associated factor X##AK292630|MAX|4149|MYC associated factor X##AK292189|MAX|4149|MYC associated factor X##BC003525|MAX|4149|MYC associated factor X##BC004516|MAX|4149|MYC associated factor X##AK290130|MAX|4149|MYC associated factor X##BC036092|MAX|4149|MYC associated factor X##BC027924|MAX|4149|MYC associated factor X##BC025685|MAX|4149|MYC associated factor X##AJ536056|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_004480|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178155|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178156|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC142958|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##AK292413|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##AK294242|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17976|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17977|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431	0.0	0.0	
chr19	2171396	2171512	reg1008472.p1	5.375	+	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	-7316	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-19901	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-19912	-	BC021037 TSC_hg19_v1_chr19_+_2222534	51020	+	BC032803 TSC_hg19_v1_chr19_+_2232168	60667	+	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	64835	-	AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1	0.0	0.0	
chr3	45919797	45919977	reg1009620.p1	5.375	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-36292	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-81739	-	BC036073 TSC_hg19_v1_chr3_-_45838029 NM_020208 NM_022405	-81857	-	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	8168	+	NM_006564 Y13248	65085	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	117434	-	BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##BC036073|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_020208|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_022405|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1	0.0	0.0	
chr1	67379645	67379748	reg1010430.p2	5.374	+	BC101646 BC101648 AF133816 AY359030 NM_005478	-112761	-	TSC_hg19_v1_chr1_+_67218151 BC106885 AK307100 AK307878	-161531	+	TSC_hg19_v1_chr1_+_67218141 NM_152665 AK098192	-161572	+	TSC_hg19_v1_chr1_-_67390540 BC032406 HQ258529 AK292830 BC126379 BC126381 AK091603 BX648840 NM_024763 NM_207014	10833	-	AK302061 NM_001077700 NM_001077702 NM_001077703 NM_001146110 NM_001146111 NM_001146112 NM_001146113 NM_020948 TSC_hg19_v1_chr1_+_67390672 AL831987 AF515447 AF515448 AY124186 AY124187 AY124189 AY124190 AY124192 AY124193 BC066898 AK307717 BC108726 CR627441 AB590466	10963	+	TSC_hg19_v1_chr1_+_67395952 AF515446 AY124188 AY124191 AY124194 NM_001077701 NM_001077704 BC017423	16271	+	BC101646|INSL5|10022|insulin-like 5##BC101648|INSL5|10022|insulin-like 5##AF133816|INSL5|10022|insulin-like 5##AY359030|INSL5|10022|insulin-like 5##NM_005478|INSL5|10022|insulin-like 5##BC106885|TCTEX1D1|200132|Tctex1 domain containing 1##AK307100|TCTEX1D1|200132|Tctex1 domain containing 1##AK307878|TCTEX1D1|200132|Tctex1 domain containing 1##NM_152665|TCTEX1D1|200132|Tctex1 domain containing 1##AK098192|TCTEX1D1|200132|Tctex1 domain containing 1##BC032406|WDR78|79819|WD repeat domain 78##HQ258529|WDR78|79819|WD repeat domain 78##AK292830|WDR78|79819|WD repeat domain 78##BC126379|WDR78|79819|WD repeat domain 78##BC126381|WDR78|79819|WD repeat domain 78##AK091603|WDR78|79819|WD repeat domain 78##BX648840|WDR78|79819|WD repeat domain 78##NM_024763|WDR78|79819|WD repeat domain 78##NM_207014|WDR78|79819|WD repeat domain 78##AK302061|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077700|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077702|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077703|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146110|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146111|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146112|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001146113|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_020948|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AL831987|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AF515447|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AF515448|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124186|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124187|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124189|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124190|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124192|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124193|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC066898|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AK307717|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC108726|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##CR627441|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AF515446|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124188|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124191|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##AY124194|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077701|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##NM_001077704|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)##BC017423|MIER1|57708|mesoderm induction early response 1 homolog (Xenopus laevis)	1.946047	0.0	denovo_WM_7:-21:0.449	denovo_WM_7:-22:0.449	denovo_WM_7:98:0.363	denovo_WM_7:100:0.434
chr11	62528854	62529016	reg1007112.p1	5.373	+	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	-7341	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	-32908	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-34000	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	93	+	TSC_hg19_v1_chr11_+_62529051 AK312131 BC112162 BC112164 U20659 AB464043	149	+	NM_006473 TSC_hg19_v1_chr11_+_62538867 AK289499 AK310054 AK301145 BC008785 AK314330	9898	+	DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##AK312131|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##BC112162|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##BC112164|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##U20659|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##NM_006473|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK289499|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK310054|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK301145|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##BC008785|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK314330|TAF6L|10629|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa	0.0	0.0	
chr14	102276444	102276624	reg1000591.p3	5.373	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-225	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	-351	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-48348	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	154294	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	154427	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	276830	-	AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.0	0.0	
chr12	51318054	51318142	reg1000074.p1	5.372	+	NM_182559 BC035123 BC048112 CU690554	-81375	+	TSC_hg19_v1_chr12_+_51158275 AK299240	-159840	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	-160220	+	TSC_hg19_v1_chr12_+_51318519 NM_014033	426	+	TSC_hg19_v1_chr12_+_51318801 AY358797 AK024409 AK307071 AK225689 AK225595 AK023693 AK293356 AJ536233 BC008180 BC004492 AB590800 EU832657 EU832734 AL050159 AF113007	703	+	NM_001109619	29683	+	NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##AK299240|ATF1|466|activating transcription factor 1##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##NM_014033|METTL7A|25840|methyltransferase like 7A##AY358797|METTL7A|25840|methyltransferase like 7A##AK024409|METTL7A|25840|methyltransferase like 7A##AK307071|METTL7A|25840|methyltransferase like 7A##AK225689|METTL7A|25840|methyltransferase like 7A##AK225595|METTL7A|25840|methyltransferase like 7A##AK023693|METTL7A|25840|methyltransferase like 7A##AK293356|METTL7A|25840|methyltransferase like 7A##AJ536233|METTL7A|25840|methyltransferase like 7A##BC008180|METTL7A|25840|methyltransferase like 7A##BC004492|METTL7A|25840|methyltransferase like 7A##EU832657|METTL7A|25840|methyltransferase like 7A##EU832734|METTL7A|25840|methyltransferase like 7A##AL050159|METTL7A|25840|methyltransferase like 7A##AF113007|METTL7A|25840|methyltransferase like 7A##NM_001109619|HIGD1C|613227|HIG1 hypoxia inducible domain family, member 1C	0.0	0.0	
chr12	82349498	82349569	reg1006507.p1	5.372	+	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-196424	-	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	-197162	-	AK294505 AK297372 AK299853 NM_001220477 NM_001220478	-357479	-	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	402643	-	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	402776	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	731167	+	AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.0	0.0	
chr13	41530779	41530868	reg1007452.p1	5.372	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	-34958	-	AF177333 TSC_hg19_v1_chr13_+_41363756	-167057	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-167139	+	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	25373	-	AK304289 BC010575 BC030507 NM_001145353	25565	-	TSC_hg19_v1_chr13_-_41593453 M82882	62620	-	AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##M82882|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	2.584521	0.0	denovo_WM_7:-1:0.269	denovo_WM_7:-2:0.553	denovo_WM_7:14:0.703
chr17	61996711	61996825	reg1009449.p1	5.372	+	M14398 AF110644 AF185611 BC075012 BC075013 V00519 BC062475 BC090045 AK300190 AY613431 AY613432 NM_000515 NM_022559 NM_022560 NM_022561 NM_022562	-602	-	BC119747 BC029365 NM_001318 NM_022579 NM_022580 NM_022581 AX772828	-8111	-	BT006926 J00118 BC002717 AK291587 BC005921 BC057768 BC062775 BC020756 NM_001317 M35419	-22817	-	S52229 S79249 X83539 M80461 BC032651 BC002975 BC030210 AX775815 AX775817 AK222954 AK313583 AK223210 NM_000626 NM_001039933 NM_021602 M89957	12898	-	AY212253 M81758 NM_000334	53470	-	AK021786 AK294360 AK302960 AK304254 NM_001164257 NM_001191029 NM_001191030 NM_001191031 BC030709 BC045676	78994	+	M14398|GH1|2688|growth hormone 1##AF110644|GH1|2688|growth hormone 1##AF185611|GH1|2688|growth hormone 1##BC075012|GH1|2688|growth hormone 1##BC075013|GH1|2688|growth hormone 1##V00519|GH1|2688|growth hormone 1##BC062475|GH1|2688|growth hormone 1##BC090045|GH1|2688|growth hormone 1##AY613431|GH1|2688|growth hormone 1##AY613432|GH1|2688|growth hormone 1##NM_000515|GH1|2688|growth hormone 1##NM_022559|GH1|2688|growth hormone 1##NM_022560|GH1|2688|growth hormone 1##NM_022561|GH1|2688|growth hormone 1##NM_022562|GH1|2688|growth hormone 1##BC119747|CSHL1|1444|chorionic somatomammotropin hormone-like 1##BC029365|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_001318|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_022579|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_022580|CSHL1|1444|chorionic somatomammotropin hormone-like 1##NM_022581|CSHL1|1444|chorionic somatomammotropin hormone-like 1##BT006926|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##J00118|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC002717|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##AK291587|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC005921|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC057768|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC062775|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##BC020756|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##NM_001317|CSH1|1442|chorionic somatomammotropin hormone 1 (placental lactogen)##S52229|CD79B|974|CD79b molecule, immunoglobulin-associated beta##S79249|CD79B|974|CD79b molecule, immunoglobulin-associated beta##X83539|CD79B|974|CD79b molecule, immunoglobulin-associated beta##M80461|CD79B|974|CD79b molecule, immunoglobulin-associated beta##BC032651|CD79B|974|CD79b molecule, immunoglobulin-associated beta##BC002975|CD79B|974|CD79b molecule, immunoglobulin-associated beta##BC030210|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AX775815|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AX775817|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AK222954|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AK313583|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AK223210|CD79B|974|CD79b molecule, immunoglobulin-associated beta##NM_000626|CD79B|974|CD79b molecule, immunoglobulin-associated beta##NM_001039933|CD79B|974|CD79b molecule, immunoglobulin-associated beta##NM_021602|CD79B|974|CD79b molecule, immunoglobulin-associated beta##M89957|CD79B|974|CD79b molecule, immunoglobulin-associated beta##AY212253|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##M81758|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##NM_000334|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##AK021786|C17orf72|92340|chromosome 17 open reading frame 72##AK294360|C17orf72|92340|chromosome 17 open reading frame 72##AK302960|C17orf72|92340|chromosome 17 open reading frame 72##AK304254|C17orf72|92340|chromosome 17 open reading frame 72##NM_001164257|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191029|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191030|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191031|C17orf72|92340|chromosome 17 open reading frame 72##BC030709|C17orf72|92340|chromosome 17 open reading frame 72##BC045676|C17orf72|92340|chromosome 17 open reading frame 72	0.0	0.104424	
chr12	15924580	15924733	reg1008461.p2	5.371	+	TSC_hg19_v1_chr12_-_15865848 AK292931	-58792	-	TSC_hg19_v1_chr12_-_15815073 AK316134	-109516	-	TSC_hg19_v1_chr12_+_15699551 AK290982	-225079	+	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	17576	-	TSC_hg19_v1_chr12_-_15942350 AK304860 NM_004447	17773	-	NM_007178 TSC_hg19_v1_chr12_+_16035321 AK074607 AK315891 AK297942 BC062306 AF161496 AB024327 AL136691 AK312295	110674	+	AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK304860|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_004447|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_007178|STRAP|11171|serine/threonine kinase receptor associated protein##AK315891|STRAP|11171|serine/threonine kinase receptor associated protein##AK297942|STRAP|11171|serine/threonine kinase receptor associated protein##BC062306|STRAP|11171|serine/threonine kinase receptor associated protein##AF161496|STRAP|11171|serine/threonine kinase receptor associated protein##AB024327|STRAP|11171|serine/threonine kinase receptor associated protein##AL136691|STRAP|11171|serine/threonine kinase receptor associated protein##AK312295|STRAP|11171|serine/threonine kinase receptor associated protein	1.133983	0.0	denovo_WM_7:2:0.927
chr3	141748078	141748227	reg1007384.p1	5.371	+	BC002405 AK303634 U18422 BC007976 AK303181 TSC_hg19_v1_chr3_-_141747469 NM_001178141 NM_001178142 NM_006286	-682	-	AL080206 NM_001178140	-28944	-	TSC_hg19_v1_chr3_+_141595539 U51478 CU680074	-152575	+	TSC_hg19_v1_chr3_-_141868338 AK314786 BC013993 U35117 NM_001178138 NM_001178139	120172	-	DQ891607 DQ894800 TSC_hg19_v1_chr3_-_141944428 AK313792 BX648681 BC032470 AK127641 BX648359 AK310761	196213	-	TSC_hg19_v1_chr3_-_141944444 NM_001039547	196302	-	AK303634|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##U18422|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##BC007976|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##AK303181|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##NM_001178141|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##NM_001178142|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##NM_006286|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##AL080206|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##NM_001178140|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##U51478|ATP1B3|483|ATPase, Na+/K+ transporting, beta 3 polypeptide##AK314786|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##BC013993|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##U35117|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##NM_001178138|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##NM_001178139|TFDP2|7029|transcription factor Dp-2 (E2F dimerization partner 2)##DQ891607|GK5|256356|glycerol kinase 5 (putative)##DQ894800|GK5|256356|glycerol kinase 5 (putative)##AK313792|GK5|256356|glycerol kinase 5 (putative)##BX648681|GK5|256356|glycerol kinase 5 (putative)##BC032470|GK5|256356|glycerol kinase 5 (putative)##AK127641|GK5|256356|glycerol kinase 5 (putative)##BX648359|GK5|256356|glycerol kinase 5 (putative)##AK310761|GK5|256356|glycerol kinase 5 (putative)##NM_001039547|GK5|256356|glycerol kinase 5 (putative)	0.99689	0.0	denovo_WM_7:40:0.867
chr14	55167625	55167785	reg1007547.p2	5.370	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	-133069	+	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	-133361	+	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	-191094	+	TSC_hg19_v1_chr14_+_55168831 AB028976	1184	+	NM_001161577 BC021726	53822	+	AY137463 AY137464 AY137465 Z16418 S44049 CR536551 DQ892998 DQ896245 S43856 S44053 TSC_hg19_v1_chr14_-_55369545 Z29433 Z29434 U66095 BC025415 U19523 U66097 NM_000161 NM_001024024 NM_001024070 NM_001024071	201709	-	AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_001161577|SAMD4A|23034|sterile alpha motif domain containing 4A##BC021726|SAMD4A|23034|sterile alpha motif domain containing 4A##AY137463|GCH1|2643|GTP cyclohydrolase 1##AY137464|GCH1|2643|GTP cyclohydrolase 1##AY137465|GCH1|2643|GTP cyclohydrolase 1##Z16418|GCH1|2643|GTP cyclohydrolase 1##S44049|GCH1|2643|GTP cyclohydrolase 1##CR536551|GCH1|2643|GTP cyclohydrolase 1##DQ892998|GCH1|2643|GTP cyclohydrolase 1##DQ896245|GCH1|2643|GTP cyclohydrolase 1##S43856|GCH1|2643|GTP cyclohydrolase 1##S44053|GCH1|2643|GTP cyclohydrolase 1##Z29433|GCH1|2643|GTP cyclohydrolase 1##Z29434|GCH1|2643|GTP cyclohydrolase 1##U66095|GCH1|2643|GTP cyclohydrolase 1##BC025415|GCH1|2643|GTP cyclohydrolase 1##U19523|GCH1|2643|GTP cyclohydrolase 1##U66097|GCH1|2643|GTP cyclohydrolase 1##NM_000161|GCH1|2643|GTP cyclohydrolase 1##NM_001024024|GCH1|2643|GTP cyclohydrolase 1##NM_001024070|GCH1|2643|GTP cyclohydrolase 1##NM_001024071|GCH1|2643|GTP cyclohydrolase 1	0.996888	0.0	
chr1	59821143	59821323	reg1009032.p2	5.370	+	NM_001244714 AK054842	-45480	+	TSC_hg19_v1_chr1_+_59762504 NM_001113411 NM_018291 BX647626 AK022237 AK090568 AX746514 AK315649 BC014947	-58621	+	BC002646 TSC_hg19_v1_chr1_-_59249716 AK307137 BC068522 NM_002228	-571498	-	AK292314 BC011621 NM_015888 AF044923 TSC_hg19_v1_chr1_+_60280620 BC107857 DQ891957 DQ895143 CU679990 AK097735	459419	+	AF144566 CU689440 DQ890862 DQ894017 AB528452 AB080265 NM_000775 U37143 AK315387 TSC_hg19_v1_chr1_-_60392444	571152	-	BC032594 TSC_hg19_v1_chr1_-_60392478	571236	-	NM_001244714|FGGY|55277|FGGY carbohydrate kinase domain containing##AK054842|FGGY|55277|FGGY carbohydrate kinase domain containing##NM_001113411|FGGY|55277|FGGY carbohydrate kinase domain containing##NM_018291|FGGY|55277|FGGY carbohydrate kinase domain containing##BX647626|FGGY|55277|FGGY carbohydrate kinase domain containing##AK022237|FGGY|55277|FGGY carbohydrate kinase domain containing##AK090568|FGGY|55277|FGGY carbohydrate kinase domain containing##AK315649|FGGY|55277|FGGY carbohydrate kinase domain containing##BC014947|FGGY|55277|FGGY carbohydrate kinase domain containing##BC002646|JUN|3725|jun proto-oncogene##BC068522|JUN|3725|jun proto-oncogene##NM_002228|JUN|3725|jun proto-oncogene##AK292314|HOOK1|51361|hook homolog 1 (Drosophila)##BC011621|HOOK1|51361|hook homolog 1 (Drosophila)##NM_015888|HOOK1|51361|hook homolog 1 (Drosophila)##AF044923|HOOK1|51361|hook homolog 1 (Drosophila)##BC107857|HOOK1|51361|hook homolog 1 (Drosophila)##DQ891957|HOOK1|51361|hook homolog 1 (Drosophila)##DQ895143|HOOK1|51361|hook homolog 1 (Drosophila)##AK097735|HOOK1|51361|hook homolog 1 (Drosophila)##AF144566|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##DQ890862|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##DQ894017|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AB080265|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##NM_000775|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##U37143|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AK315387|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##BC032594|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2	0.995606	0.0	denovo_WM_7:-1:0.231	denovo_WM_7:-3:0.723
chr16	30470516	30470696	reg1005047.p2	5.370	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-13377	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-13424	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-29267	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	13394	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	13466	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	13527	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.995405	0.0	denovo_WM_7:-63:0.711	denovo_WM_7:-64:0.240
chr19	41632718	41632813	reg1009542.p1	5.370	+	AK296884 AK298082 AK316498 J02906 NM_000774 BC109057 BC109056	-12418	+	NM_000766 AB527127 AF209774 AY513604 AY513605 AY513606 AY513607 AY513608 AY513609	-38394	+	TSC_hg19_v1_chr19_+_41515553 X06399	-117227	+	TSC_hg19_v1_chr19_+_41699123 AK027605 NM_030622 AY358603	66339	+	TSC_hg19_v1_chr19_+_41699143 AK296087 BC033691 AF335278 CU689700 DQ893363 DQ896681	66398	+	TSC_hg19_v1_chr19_+_41725118 NM_001699 NM_021913	92346	+	AK298082|CYP2F1|1572|cytochrome P450, family 2, subfamily F, polypeptide 1##AK316498|CYP2F1|1572|cytochrome P450, family 2, subfamily F, polypeptide 1##J02906|CYP2F1|1572|cytochrome P450, family 2, subfamily F, polypeptide 1##NM_000774|CYP2F1|1572|cytochrome P450, family 2, subfamily F, polypeptide 1##BC109057|CYP2F1|1572|cytochrome P450, family 2, subfamily F, polypeptide 1##BC109056|CYP2F1|1572|cytochrome P450, family 2, subfamily F, polypeptide 1##NM_000766|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AF209774|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AY513604|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AY513605|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AY513606|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AY513607|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AY513608|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##AY513609|CYP2A13|1553|cytochrome P450, family 2, subfamily A, polypeptide 13##X06399|CYP2B6|1555|cytochrome P450, family 2, subfamily B, polypeptide 6##AK027605|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##NM_030622|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##AY358603|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##AK296087|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##BC033691|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##AF335278|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##DQ893363|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##DQ896681|CYP2S1|29785|cytochrome P450, family 2, subfamily S, polypeptide 1##NM_001699|AXL|558|AXL receptor tyrosine kinase##NM_021913|AXL|558|AXL receptor tyrosine kinase	2.005713	0.34971	CTCF.p2:-6:0.350	denovo_WM_7:-49:0.587	denovo_WM_7:-50:0.395	denovo_WM_7:106:0.903
chr5	89825743	89825874	reg1004880.p1	5.370	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-442	-	NM_006467 AK295434 U93868	-55106	+	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	-55230	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	28806	+	AK091866 TSC_hg19_v1_chr5_-_90610220	784437	-	TSC_hg19_v1_chr5_+_90676181 BC043415	850354	+	BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716	0.0	0.0	
chr6	137415667	137415797	reg1007189.p1	5.370	+	AF184971 AK315293 BC113574 BC113602 NM_014432 AK307072	-49487	-	TSC_hg19_v1_chr6_-_137365811 AY358883 HQ258452	-49894	-	AK316095 BC087842 NM_001008783 AK295424	-172279	+	AY044429 AY358737 AY040566 AY040567 AY040568 AY358111 AJ313161 AJ313162 NM_052962 NM_181309 NM_181310	79019	-	TSC_hg19_v1_chr6_-_137540496 BT006814 AB527981 CU675119 AF056979 AK294252	124736	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	124780	-	AF184971|IL20RA|53832|interleukin 20 receptor, alpha##AK315293|IL20RA|53832|interleukin 20 receptor, alpha##BC113574|IL20RA|53832|interleukin 20 receptor, alpha##BC113602|IL20RA|53832|interleukin 20 receptor, alpha##NM_014432|IL20RA|53832|interleukin 20 receptor, alpha##AK307072|IL20RA|53832|interleukin 20 receptor, alpha##AY358883|IL20RA|53832|interleukin 20 receptor, alpha##HQ258452|IL20RA|53832|interleukin 20 receptor, alpha##AK316095|SLC35D3|340146|solute carrier family 35, member D3##BC087842|SLC35D3|340146|solute carrier family 35, member D3##NM_001008783|SLC35D3|340146|solute carrier family 35, member D3##AK295424|SLC35D3|340146|solute carrier family 35, member D3##AY044429|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358737|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040566|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040567|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY040568|IL22RA2|116379|interleukin 22 receptor, alpha 2##AY358111|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313161|IL22RA2|116379|interleukin 22 receptor, alpha 2##AJ313162|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_052962|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181309|IL22RA2|116379|interleukin 22 receptor, alpha 2##NM_181310|IL22RA2|116379|interleukin 22 receptor, alpha 2##BT006814|IFNGR1|3459|interferon gamma receptor 1##AF056979|IFNGR1|3459|interferon gamma receptor 1##AK294252|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1	0.0	0.358316	CTCF.p2:-53:0.358
chr10	103948963	103949142	reg1005371.p1	5.369	+	NM_004741 TSC_hg19_v1_chr10_+_103912145 Z34289 AK225101 AK314363 AK056755 BC001883 BC006769 DQ891862 DQ895051 AY820769 D21262	-37001	+	AF325193 NM_015062 TSC_hg19_v1_chr10_+_103892796 AK299885 BC063806 AB011167 BC063829 AK095248 AB384505	-56247	+	TSC_hg19_v1_chr10_-_103879963 NM_001113407	-68909	-	BC034344 NM_152310	37090	+	BC011642 NM_005029	52177	-	NM_001199378 NM_001199379 NM_004193 BC057804 BC068543 TSC_hg19_v1_chr10_+_104005288 BC094763 AK025330 BC032543	56227	+	NM_004741|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##Z34289|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK225101|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK314363|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AK056755|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##BC001883|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##BC006769|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##DQ891862|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##DQ895051|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AY820769|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##D21262|NOLC1|9221|nucleolar and coiled-body phosphoprotein 1##AF325193|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##NM_015062|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##AK299885|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##BC063806|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##AB011167|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##BC063829|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##AK095248|PPRC1|23082|peroxisome proliferator-activated receptor gamma, coactivator-related 1##NM_001113407|LDB1|8861|LIM domain binding 1##BC034344|ELOVL3|83401|ELOVL fatty acid elongase 3##NM_152310|ELOVL3|83401|ELOVL fatty acid elongase 3##BC011642|PITX3|5309|paired-like homeodomain 3##NM_005029|PITX3|5309|paired-like homeodomain 3##NM_001199378|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_001199379|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##NM_004193|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC094763|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##AK025330|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1##BC032543|GBF1|8729|golgi brefeldin A resistant guanine nucleotide exchange factor 1	0.998279	0.0	denovo_WM_7:20:0.827
chr1	25255353	25255514	reg1008866.p1	5.369	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-183428	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-183500	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-183602	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	992	-	TSC_hg19_v1_chr1_-_25256761 AK301044	1306	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	1353	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.01143	0.0	
chr3	194169782	194169905	reg1009516.p1	5.369	+	NM_004488	-49849	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	-79376	-	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	-97769	-	NM_024524	19124	-	TSC_hg19_v1_chr3_+_194207865 AK091527	37959	+	TSC_hg19_v1_chr3_+_194304750 AK124168	134890	+	NM_004488|GP5|2814|glycoprotein V (platelet)##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_024524|ATP13A3|79572|ATPase type 13A3##AK091527|FLJ34208|401106|uncharacterized LOC401106	0.0	0.0	
chr5	58435613	58435732	reg1009680.p2	5.369	+	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	-100294	-	BC036319 NM_001197223	-139914	-	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-556753	+	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	136258	-	AB528028 AF536977 NM_001197219 TSC_hg19_v1_chr5_-_58652809	217071	-	U50159 NM_006203 L20970	446627	-	U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF536977|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197219|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50159|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_006203|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##L20970|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	1.482045	0.0	denovo_WM_7:-25:0.716	denovo_WM_7:-42:0.711
chr6	74180844	74181012	reg1007768.p2	5.369	+	AL833823 TSC_hg19_v1_chr6_+_74171681	-9272	+	NM_001123226 NM_012123 NM_133645 TSC_hg19_v1_chr6_+_74171505 AK225828 AK074625 AF319422 AF469110 AF469111 AY078985 AY078986 BC005808 BC011051 AJ420530 AF132937	-9421	+	TSC_hg19_v1_chr6_-_74162038 NM_138441	-18870	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	48241	-	TSC_hg19_v1_chr6_-_74230163 AY043301	49242	-	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	49818	-	AL833823|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_001123226|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_012123|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_133645|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK225828|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK074625|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF319422|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469110|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469111|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078985|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078986|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC005808|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC011051|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AJ420530|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF132937|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_138441|MB21D1|115004|Mab-21 domain containing 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1	0.310886	0.0	denovo_WM_7:6:0.241
chr8	123811473	123811653	reg1005048.p2	5.369	+	TSC_hg19_v1_chr8_+_123794108 AB020661	-17460	+	BC042145 TSC_hg19_v1_chr8_+_123794000	-17569	+	TSC_hg19_v1_chr8_+_123793897 NM_014943	-17652	+	TSC_hg19_v1_chr8_+_123963651 EU446694 AB083653	152136	+	BC002457 TSC_hg19_v1_chr8_-_124054522	242944	-	AY358818 TSC_hg19_v1_chr8_-_124054540 AK303826	242977	-	AB020661|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##EU446694|ZHX2|22882|zinc fingers and homeoboxes 2##AB083653|ZHX2|22882|zinc fingers and homeoboxes 2##BC002457|DERL1|79139|Der1-like domain family, member 1##AY358818|DERL1|79139|Der1-like domain family, member 1##AK303826|DERL1|79139|Der1-like domain family, member 1	0.979594	0.0	denovo_WM_7:81:0.980
chr1	17862854	17863034	reg1008510.p1	5.368	+	TSC_hg19_v1_chr1_+_17846826 AK129959	-16121	+	TSC_hg19_v1_chr1_-_17766260 NM_018715	-96673	-	TSC_hg19_v1_chr1_-_17766174 AB040903	-96769	-	TSC_hg19_v1_chr1_+_17866365 AB046846 NM_018125 AK311076	3416	+	TSC_hg19_v1_chr1_+_17906948 NM_001011722 BC117171 BC143347 DQ139833 HQ258640	44071	+	AK092020 AX747316 AK300264 TSC_hg19_v1_chr1_+_17944871	81921	+	AK129959|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##NM_018715|RCC2|55920|regulator of chromosome condensation 2##AB040903|RCC2|55920|regulator of chromosome condensation 2##AB046846|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##NM_018125|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK311076|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##NM_001011722|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##BC117171|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##BC143347|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##DQ139833|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##HQ258640|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK092020|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK300264|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like	0.766705	0.0	denovo_WM_7:36:0.727
chr21	45019696	45019825	reg1009995.p1	5.368	+	TSC_hg19_v1_chr21_-_44847012 AB047786 NM_173354 BC038504	-172765	-	TSC_hg19_v1_chr21_-_44845958 AK131076 CU691580 DQ892466 DQ895679	-173771	-	NM_000394 U05569 BC069528 BC113598 X14789 CU686888 HQ258067 CR407691 U66584	-430586	+	TSC_hg19_v1_chr21_-_45079376 BC000153 AK314121 AB007131 NM_007031	59602	-	TSC_hg19_v1_chr21_+_45079444 BC028386 NM_015056 BC014005 AK056263 D80001 AB385292	59698	+	TSC_hg19_v1_chr21_+_45138985 BC005825 NM_003681	119219	+	AB047786|SIK1|150094|salt-inducible kinase 1##NM_173354|SIK1|150094|salt-inducible kinase 1##BC038504|SIK1|150094|salt-inducible kinase 1##AK131076|SIK1|150094|salt-inducible kinase 1##DQ892466|SIK1|150094|salt-inducible kinase 1##DQ895679|SIK1|150094|salt-inducible kinase 1##NM_000394|CRYAA|1409|crystallin, alpha A##U05569|CRYAA|1409|crystallin, alpha A##BC069528|CRYAA|1409|crystallin, alpha A##BC113598|CRYAA|1409|crystallin, alpha A##X14789|CRYAA|1409|crystallin, alpha A##HQ258067|CRYAA|1409|crystallin, alpha A##CR407691|CRYAA|1409|crystallin, alpha A##U66584|CRYAA|1409|crystallin, alpha A##BC000153|HSF2BP|11077|heat shock transcription factor 2 binding protein##AK314121|HSF2BP|11077|heat shock transcription factor 2 binding protein##AB007131|HSF2BP|11077|heat shock transcription factor 2 binding protein##NM_007031|HSF2BP|11077|heat shock transcription factor 2 binding protein##BC028386|RRP1B|23076|ribosomal RNA processing 1 homolog B (S. cerevisiae)##NM_015056|RRP1B|23076|ribosomal RNA processing 1 homolog B (S. cerevisiae)##BC014005|RRP1B|23076|ribosomal RNA processing 1 homolog B (S. cerevisiae)##AK056263|RRP1B|23076|ribosomal RNA processing 1 homolog B (S. cerevisiae)##D80001|RRP1B|23076|ribosomal RNA processing 1 homolog B (S. cerevisiae)##BC005825|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##NM_003681|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase	1.620651	0.0	denovo_WM_7:-1:0.313	denovo_WM_7:-2:0.313	denovo_WM_7:-3:0.313	denovo_WM_7:-77:0.522
chr3	46101042	46101186	reg1009114.p1	5.368	+	AB189434 AB189435 NM_001024644 NM_005283	-32136	-	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	-63793	-	NM_006564 Y13248	-116142	+	BC064991 TSC_hg19_v1_chr3_-_46249804 L10918 BC051306 NM_001295	148695	-	NM_001164680 NM_001837 NM_178328 NM_178329 AF262300 AF262299 AF224495 AF262301 AF262302 AF262303 AF262304 BC130318 BC130320 BC110297	182802	+	AK292685 NM_001123041 NM_001123396	294115	+	AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##BC064991|CCR1|1230|chemokine (C-C motif) receptor 1##L10918|CCR1|1230|chemokine (C-C motif) receptor 1##BC051306|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001295|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001164680|CCR3|1232|chemokine (C-C motif) receptor 3##NM_001837|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178328|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178329|CCR3|1232|chemokine (C-C motif) receptor 3##AF262300|CCR3|1232|chemokine (C-C motif) receptor 3##AF262299|CCR3|1232|chemokine (C-C motif) receptor 3##AF224495|CCR3|1232|chemokine (C-C motif) receptor 3##AF262301|CCR3|1232|chemokine (C-C motif) receptor 3##AF262302|CCR3|1232|chemokine (C-C motif) receptor 3##AF262303|CCR3|1232|chemokine (C-C motif) receptor 3##AF262304|CCR3|1232|chemokine (C-C motif) receptor 3##BC130318|CCR3|1232|chemokine (C-C motif) receptor 3##BC130320|CCR3|1232|chemokine (C-C motif) receptor 3##BC110297|CCR3|1232|chemokine (C-C motif) receptor 3##AK292685|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123041|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123396|CCR2|729230|chemokine (C-C motif) receptor 2	0.0	0.0	
chr6	106242047	106242188	reg1009444.p1	5.368	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-391122	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-391159	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-391271	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	292079	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	292118	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	304687	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	1.082122	0.0	denovo_WM_7:-32:0.447	denovo_WM_7:-33:0.447
chr12	6737054	6737191	reg1007558.p2	5.367	+	AK128741 NM_001273 TSC_hg19_v1_chr12_-_6716562	-20566	-	X86691 TSC_hg19_v1_chr12_-_6716523 BC014964 BC025962 BC038596	-20621	-	CR936680 EU446505 TSC_hg19_v1_chr12_-_6715604	-21554	-	NM_001142961 TSC_hg19_v1_chr12_-_6740816	3693	-	BC033571 TSC_hg19_v1_chr12_-_6745131 AK313127 BC072394 NM_020400	8069	-	DQ890872 DQ894028 TSC_hg19_v1_chr12_-_6756578 AK302290 AK311572 BC033010 AB051833 NM_032489	19442	-	AK128741|CHD4|1108|chromodomain helicase DNA binding protein 4##NM_001273|CHD4|1108|chromodomain helicase DNA binding protein 4##X86691|CHD4|1108|chromodomain helicase DNA binding protein 4##BC014964|CHD4|1108|chromodomain helicase DNA binding protein 4##BC025962|CHD4|1108|chromodomain helicase DNA binding protein 4##BC038596|CHD4|1108|chromodomain helicase DNA binding protein 4##CR936680|CHD4|1108|chromodomain helicase DNA binding protein 4##EU446505|CHD4|1108|chromodomain helicase DNA binding protein 4##NM_001142961|LPAR5|57121|lysophosphatidic acid receptor 5##BC033571|LPAR5|57121|lysophosphatidic acid receptor 5##AK313127|LPAR5|57121|lysophosphatidic acid receptor 5##BC072394|LPAR5|57121|lysophosphatidic acid receptor 5##NM_020400|LPAR5|57121|lysophosphatidic acid receptor 5##DQ890872|ACRBP|84519|acrosin binding protein##DQ894028|ACRBP|84519|acrosin binding protein##AK302290|ACRBP|84519|acrosin binding protein##AK311572|ACRBP|84519|acrosin binding protein##BC033010|ACRBP|84519|acrosin binding protein##AB051833|ACRBP|84519|acrosin binding protein##NM_032489|ACRBP|84519|acrosin binding protein	1.255074	0.0	denovo_WM_7:60:0.237	denovo_WM_7:75:0.866
chr14	31090494	31090631	reg1009143.p1	5.367	+	NM_017769 TSC_hg19_v1_chr14_+_31028363 AK000340 AK093536 AK225346 AK295571 AK296872 BC008436 AB037754 BC000973	-62202	+	TSC_hg19_v1_chr14_-_30396811 AK314170 NM_002742	-693708	-	TSC_hg19_v1_chr14_+_29241992 BX248251	-1848567	+	AK308587 TSC_hg19_v1_chr14_+_31091524 AF319958 NM_016106 NM_182835 AB020724 AK290410 AK297873 AK301406 AK307960 AK316212 AK299222	962	+	TSC_hg19_v1_chr14_+_31091535 AK298622 AK222820 AB463243 BC017734 AF086916 CU676040 AF110646 AF092139	982	+	TSC_hg19_v1_chr14_+_31343764 NM_001135058 NM_004086 AY358900 AF006740 AK292724 BC000640 BC007230 BC018827	253156	+	NM_017769|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AK000340|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AK093536|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AK225346|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AK295571|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AK296872|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##BC008436|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AB037754|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##BC000973|G2E3|55632|G2/M-phase specific E3 ubiquitin protein ligase##AK314170|PRKD1|5587|protein kinase D1##NM_002742|PRKD1|5587|protein kinase D1##BX248251|C14orf23|387978|chromosome 14 open reading frame 23##AK308587|SCFD1|23256|sec1 family domain containing 1##AF319958|SCFD1|23256|sec1 family domain containing 1##NM_016106|SCFD1|23256|sec1 family domain containing 1##NM_182835|SCFD1|23256|sec1 family domain containing 1##AB020724|SCFD1|23256|sec1 family domain containing 1##AK290410|SCFD1|23256|sec1 family domain containing 1##AK297873|SCFD1|23256|sec1 family domain containing 1##AK301406|SCFD1|23256|sec1 family domain containing 1##AK307960|SCFD1|23256|sec1 family domain containing 1##AK316212|SCFD1|23256|sec1 family domain containing 1##AK299222|SCFD1|23256|sec1 family domain containing 1##AK298622|SCFD1|23256|sec1 family domain containing 1##AK222820|SCFD1|23256|sec1 family domain containing 1##BC017734|SCFD1|23256|sec1 family domain containing 1##AF086916|SCFD1|23256|sec1 family domain containing 1##AF110646|SCFD1|23256|sec1 family domain containing 1##AF092139|SCFD1|23256|sec1 family domain containing 1##NM_001135058|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##NM_004086|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AY358900|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AF006740|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AK292724|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##BC000640|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##BC007230|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##BC018827|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)	0.993276	0.0	denovo_WM_7:-41:0.248	denovo_WM_7:-42:0.248	denovo_WM_7:-43:0.248	denovo_WM_7:-44:0.248
chr12	12533166	12533282	reg1010594.p1	5.366	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-23059	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-30052	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-113382	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	182176	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	231571	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	231659	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.092987	0.0	
chr13	21517768	21517929	reg1008918.p1	5.366	+	TSC_hg19_v1_chr13_-_21476909 NM_022459	-40911	-	BC050680 AB051508 AB384273 AK057924 BC098402 TSC_hg19_v1_chr13_-_21476886 AK302760	-40978	-	TSC_hg19_v1_chr13_-_21348081 AK055408 AK316604	-169761	-	TSC_hg19_v1_chr13_-_21635685 BC127671 AF207547 AB209897 BC071572	117817	-	TSC_hg19_v1_chr13_-_21635719 NM_014572	117868	-	NM_005870 TSC_hg19_v1_chr13_+_21714679	196819	+	NM_022459|XPO4|64328|exportin 4##BC050680|XPO4|64328|exportin 4##AB051508|XPO4|64328|exportin 4##AK057924|XPO4|64328|exportin 4##BC098402|XPO4|64328|exportin 4##AK302760|XPO4|64328|exportin 4##AK316604|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC127671|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AF207547|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AB209897|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##BC071572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##NM_014572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##NM_005870|SAP18|10284|Sin3A-associated protein, 18kDa	0.0	0.977319	CTCF.p2:25:0.977
chr6	27763619	27763729	reg1006643.p1	5.366	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-322973	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-407119	+	AF352327 AF336874 BC107050 NM_032030	-471116	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	12049	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	12267	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	14108	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.999195	0.0	denovo_WM_7:-50:0.436	denovo_WM_7:-51:0.436
chr7	76757902	76758050	reg1008231.p1	5.366	+	BC036053 NM_020879 BX649000 AK292491 HM370402	-6030	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-501429	-	TSC_hg19_v1_chr7_-_76256148 BC017101	-501773	-	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	71160	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	287742	-	TSC_hg19_v1_chr7_+_77166392 BC050008	408402	+	BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC017101|POMZP3|22932|POM121 and ZP3 fusion##GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.0	0.0	
chr8	42928783	42928900	reg1008048.p2	5.366	+	TSC_hg19_v1_chr8_+_42911465 NM_002027 BC037295 AK292121 L00634 BC084566 L10413 AB590505 BT009854 BC017029	-17373	+	TSC_hg19_v1_chr8_+_42752142 BC056146	-176695	+	TSC_hg19_v1_chr8_+_42752090 AK309224	-176753	+	TSC_hg19_v1_chr8_+_42948657 NM_032237	19812	+	AK027009 TSC_hg19_v1_chr8_+_42948660	19826	+	TSC_hg19_v1_chr8_+_42995606 NM_152419	66739	+	NM_002027|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC037295|FNTA|2339|farnesyltransferase, CAAX box, alpha##AK292121|FNTA|2339|farnesyltransferase, CAAX box, alpha##L00634|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC084566|FNTA|2339|farnesyltransferase, CAAX box, alpha##L10413|FNTA|2339|farnesyltransferase, CAAX box, alpha##BT009854|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC017029|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC056146|HOOK3|84376|hook homolog 3 (Drosophila)##AK309224|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032237|SGK196|84197|protein kinase-like protein SgK196##NM_152419|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase	0.993874	0.514472	CTCF.p2:20:0.514	denovo_WM_7:-29:0.898
chrX	48816036	48816216	reg1000567.p2	5.366	+	TSC_hg19_v1_chrX_-_48815644 NM_001136159	-482	-	TSC_hg19_v1_chrX_-_48815601 AK294590	-519	-	TSC_hg19_v1_chrX_-_48815168 BC098440	-995	-	BC045659 NM_004979 TSC_hg19_v1_chrX_-_48828252	12125	-	TSC_hg19_v1_chrX_-_48858674 AB032993 AB527837 AK292158 BC101544 BC101546 BX647801 BX647804 NM_020137 NM_207672	42522	-	AB527281 EU446500 EU831602 EU831689 AK313540 BC001532 TSC_hg19_v1_chrX_-_48900884	84700	-	NM_001136159|OTUD5|55593|OTU domain containing 5##AK294590|OTUD5|55593|OTU domain containing 5##BC098440|OTUD5|55593|OTU domain containing 5##BC045659|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##NM_004979|KCND1|3750|potassium voltage-gated channel, Shal-related subfamily, member 1##AB032993|GRIPAP1|56850|GRIP1 associated protein 1##AK292158|GRIPAP1|56850|GRIP1 associated protein 1##BC101544|GRIPAP1|56850|GRIP1 associated protein 1##BC101546|GRIPAP1|56850|GRIP1 associated protein 1##BX647801|GRIPAP1|56850|GRIP1 associated protein 1##BX647804|GRIPAP1|56850|GRIP1 associated protein 1##NM_020137|GRIPAP1|56850|GRIP1 associated protein 1##NM_207672|GRIPAP1|56850|GRIP1 associated protein 1##EU446500|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831602|TFE3|7030|transcription factor binding to IGHM enhancer 3##EU831689|TFE3|7030|transcription factor binding to IGHM enhancer 3##AK313540|TFE3|7030|transcription factor binding to IGHM enhancer 3##BC001532|TFE3|7030|transcription factor binding to IGHM enhancer 3	0.0	0.0	
chr12	50569375	50569504	reg1004132.p2	5.365	+	TSC_hg19_v1_chr12_-_50561153 AK298924	-8214	-	TSC_hg19_v1_chr12_-_50561112 AK026014	-8314	-	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	-8348	-	AK023649 AF157325 NM_001243775	25870	-	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	47017	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	107856	-	AK298924|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1	0.0	0.943056	CTCF.p2:-9:0.943
chr6	87797913	87798037	reg1009926.p1	5.365	+	NM_000865	-150952	+	BC009220 BC108291 AK311192 TSC_hg19_v1_chr6_-_86388452	-1409538	-	TSC_hg19_v1_chr6_-_86353055 AF037448 NM_001159677 NM_006372	-1444950	-	V00518 AK023644 AK311972 BC055080 BC010957 BC020782 NM_000735 NM_001252383	6843	-	TSC_hg19_v1_chr6_+_87865282 NM_015021 AK123473 BX537746 CR936740	67314	+	TSC_hg19_v1_chr6_+_87964930 AL832366	167005	+	NM_000865|HTR1E|3354|5-hydroxytryptamine (serotonin) receptor 1E##BC009220|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##BC108291|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##AF037448|SYNCRIP|10492|synaptotagmin binding, cytoplasmic RNA interacting protein##NM_001159677|SYNCRIP|10492|synaptotagmin binding, cytoplasmic RNA interacting protein##NM_006372|SYNCRIP|10492|synaptotagmin binding, cytoplasmic RNA interacting protein##V00518|CGA|1081|glycoprotein hormones, alpha polypeptide##AK311972|CGA|1081|glycoprotein hormones, alpha polypeptide##BC055080|CGA|1081|glycoprotein hormones, alpha polypeptide##BC010957|CGA|1081|glycoprotein hormones, alpha polypeptide##BC020782|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000735|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_001252383|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_015021|ZNF292|23036|zinc finger protein 292##AK123473|ZNF292|23036|zinc finger protein 292##BX537746|ZNF292|23036|zinc finger protein 292##AL832366|ZNF292|23036|zinc finger protein 292	0.995515	0.0	denovo_WM_7:-20:0.247	denovo_WM_7:-23:0.390	denovo_WM_7:-24:0.252
chr9	3524503	3524683	reg1006365.p1	5.365	+	AK127804 TSC_hg19_v1_chr9_-_3223066	-301557	-	TSC_hg19_v1_chr9_-_2844102 AK315531 NM_014878	-680480	-	TSC_hg19_v1_chr9_-_2844084 AL832245 AK225953 AL832239	-680504	-	TSC_hg19_v1_chr9_-_3525889 AK310956 AK289540	1246	-	TSC_hg19_v1_chr9_-_3525983 BC022191 NM_002919 NM_134428	1411	-	TSC_hg19_v1_chr9_+_3526079 AK125504	1495	+	AK315531|KIAA0020|9933|KIAA0020##NM_014878|KIAA0020|9933|KIAA0020##AL832245|KIAA0020|9933|KIAA0020##AK225953|KIAA0020|9933|KIAA0020##AL832239|KIAA0020|9933|KIAA0020##AK310956|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##AK289540|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##BC022191|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_002919|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_134428|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)	0.992512	0.0	denovo_WM_7:-29:0.745
chrX	18409168	18409320	reg1007294.p1	5.365	+	Y18004 BC051913 TSC_hg19_v1_chrX_-_18372809 BC064617 AK303064 AK315116 BC040497 NM_006089	-36434	-	DQ892470 DQ895683 BC096745 BC037301 AK128155 NM_001184767 NM_153346	-170296	-	AK056214 AK298873 AK314631 NM_001172732 NM_001172739 NM_001172743 NM_021785	-529839	-	BC010966 TSC_hg19_v1_chrX_+_18443727 NM_003159 AK307444 AY217744 Y15057	34485	+	BC036091 NM_001037343	51099	+	AB464151 AF014459 DQ426892 NM_000330	280960	-	Y18004|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##BC051913|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##BC064617|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##AK303064|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##AK315116|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##BC040497|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##NM_006089|SCML2|10389|sex comb on midleg-like 2 (Drosophila)##DQ892470|BEND2|139105|BEN domain containing 2##DQ895683|BEND2|139105|BEN domain containing 2##BC096745|BEND2|139105|BEN domain containing 2##BC037301|BEND2|139105|BEN domain containing 2##AK128155|BEND2|139105|BEN domain containing 2##NM_001184767|BEND2|139105|BEN domain containing 2##NM_153346|BEND2|139105|BEN domain containing 2##AK056214|RAI2|10742|retinoic acid induced 2##AK298873|RAI2|10742|retinoic acid induced 2##AK314631|RAI2|10742|retinoic acid induced 2##NM_001172732|RAI2|10742|retinoic acid induced 2##NM_001172739|RAI2|10742|retinoic acid induced 2##NM_001172743|RAI2|10742|retinoic acid induced 2##NM_021785|RAI2|10742|retinoic acid induced 2##BC010966|CDKL5|6792|cyclin-dependent kinase-like 5##NM_003159|CDKL5|6792|cyclin-dependent kinase-like 5##AK307444|CDKL5|6792|cyclin-dependent kinase-like 5##AY217744|CDKL5|6792|cyclin-dependent kinase-like 5##Y15057|CDKL5|6792|cyclin-dependent kinase-like 5##BC036091|CDKL5|6792|cyclin-dependent kinase-like 5##NM_001037343|CDKL5|6792|cyclin-dependent kinase-like 5##AF014459|RS1|6247|retinoschisin 1##DQ426892|RS1|6247|retinoschisin 1##NM_000330|RS1|6247|retinoschisin 1	0.575277	0.996952	CTCF.p2:20:0.997	denovo_WM_7:-37:0.396
chr10	49481871	49482040	reg1008455.p1	5.364	+	BC146955 BC146968 BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556	-274134	-	BC036539 AL050040 NM_001042363 NM_001042364 NM_001042365 NM_001042387 NM_001042395 NM_001042396 NM_001042397 NM_015605 CR933668 BX648913	-654013	-	AY704141 AY704142 AY704143 AY704144 AY704145 AY704147 AY704148 AY704150 AY704152 AY704153 AY704154 AY704156 AY704157 AY704158 NM_001042358 NM_001042359 NM_001042360 NM_001042361 NM_001042362 NM_001042390 NM_001042391 NM_001042392 NM_001042393 NM_001042394 AY753191	-654346	-	CR749241 NM_001018071	971	-	TSC_hg19_v1_chr10_+_49514722 AK292523	32831	+	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	127717	+	BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##BC036539|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AL050040|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042363|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042364|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042365|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042387|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042395|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042396|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042397|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_015605|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##CR933668|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##BX648913|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704141|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704142|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704143|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704144|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704145|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704147|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704148|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704150|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704152|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704153|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704154|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704156|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704157|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##AY704158|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042358|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042359|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042360|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042361|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042362|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##NM_001042390|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042391|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042392|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042393|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##NM_001042394|PTPN20A|653129|protein tyrosine phosphatase, non-receptor type 20A##AY753191|PTPN20B|26095|protein tyrosine phosphatase, non-receptor type 20B##CR749241|FRMPD2|143162|FERM and PDZ domain containing 2##NM_001018071|FRMPD2|143162|FERM and PDZ domain containing 2##AK292523|MAPK8|5599|mitogen-activated protein kinase 8##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8	0.996729	0.0	denovo_WM_7:-18:0.527	denovo_WM_7:-19:0.470
chr10	73745361	73745510	reg1008406.p1	5.364	+	TSC_hg19_v1_chr10_+_73723993 AB017915 NM_004273 AB012192	-21378	+	TSC_hg19_v1_chr10_-_73611059 NM_001042465 NM_001042466 NM_002778	-134344	-	AK299184 TSC_hg19_v1_chr10_-_73611043	-134392	-	AK292328 TSC_hg19_v1_chr10_-_73848270 AK294008 AK307091	102833	-	TSC_hg19_v1_chr10_-_73848286 AY358921	102847	-	TSC_hg19_v1_chr10_-_73848310 AJ001453	102905	-	AB017915|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_004273|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##AB012192|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_001042465|PSAP|5660|prosaposin##NM_001042466|PSAP|5660|prosaposin##NM_002778|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin##AK292328|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK294008|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK307091|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AY358921|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	0.93825	0.0	denovo_WM_7:-9:0.219	denovo_WM_7:-11:0.226	denovo_WM_7:-14:0.333
chr13	24540961	24541141	reg1008714.p1	5.364	+	NM_001007537 CU691876 BC137004 BC137006 BC144450	-69893	-	NM_001135816 BC142999	-77459	+	TSC_hg19_v1_chr13_-_24463540 DQ893610 DQ896839 AK291923 U80034 AK225290 AK308908 BC009934 NM_005932	-77537	-	BX648445 TSC_hg19_v1_chr13_+_24553892	12814	+	TSC_hg19_v1_chr13_+_24553943 BX648244 BC043582	12882	+	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	193844	+	NM_001007537|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137004|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137006|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC144450|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##NM_001135816|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC142999|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##DQ893610|MIPEP|4285|mitochondrial intermediate peptidase##DQ896839|MIPEP|4285|mitochondrial intermediate peptidase##AK291923|MIPEP|4285|mitochondrial intermediate peptidase##U80034|MIPEP|4285|mitochondrial intermediate peptidase##AK225290|MIPEP|4285|mitochondrial intermediate peptidase##AK308908|MIPEP|4285|mitochondrial intermediate peptidase##BC009934|MIPEP|4285|mitochondrial intermediate peptidase##NM_005932|MIPEP|4285|mitochondrial intermediate peptidase##BX648244|SPATA13|221178|spermatogenesis associated 13##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13	0.0	0.0	
chr5	159508085	159508231	reg1007871.p2	5.364	+	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	-71991	+	TSC_hg19_v1_chr5_+_159436145 AK315262	-72011	+	NM_000679 U03865 BC136568 BC136569 AK309989 L31773	-164333	+	TSC_hg19_v1_chr5_-_159546405 AB067522 BC035076 BC105110 BC143437 NM_001130864 NM_052927	38301	-	DQ132786 NM_001130958	106215	+	NM_001040442 AB528665	117922	+	AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##NM_000679|ADRA1B|147|adrenergic, alpha-1B-, receptor##U03865|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136568|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136569|ADRA1B|147|adrenergic, alpha-1B-, receptor##L31773|ADRA1B|147|adrenergic, alpha-1B-, receptor##AB067522|PWWP2A|114825|PWWP domain containing 2A##BC035076|PWWP2A|114825|PWWP domain containing 2A##BC105110|PWWP2A|114825|PWWP domain containing 2A##BC143437|PWWP2A|114825|PWWP domain containing 2A##NM_001130864|PWWP2A|114825|PWWP domain containing 2A##NM_052927|PWWP2A|114825|PWWP domain containing 2A##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal	0.998167	0.0	
chr1	215743504	215743637	reg1009520.p1	5.363	+	TSC_hg19_v1_chr1_+_215740717 BC013868 NM_016121 BC094879 BC117188 BC126173 BC143963 HQ258497	-2707	+	NM_001017425 NM_014217 AK294780 AK291483 BC143586 BC101693 BC101695 AF004711 EF165334 AF171068 BC069462 EF165335	-486960	+	NM_001017424	-564686	+	AF055580 AY481573 NM_007123 NM_206933	853167	-	HQ692853 AF117255 BC008218 AY388456 AK291647 TSC_hg19_v1_chr1_-_216896791 AB020639 AK290945 BC064700 NM_001243515 NM_001243518 NM_001243519 NM_001438	1153156	-	AY388461 NM_001243514	1235138	-	BC013868|KCTD3|51133|potassium channel tetramerisation domain containing 3##NM_016121|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC094879|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC117188|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC126173|KCTD3|51133|potassium channel tetramerisation domain containing 3##BC143963|KCTD3|51133|potassium channel tetramerisation domain containing 3##HQ258497|KCTD3|51133|potassium channel tetramerisation domain containing 3##NM_001017425|KCNK2|3776|potassium channel, subfamily K, member 2##NM_014217|KCNK2|3776|potassium channel, subfamily K, member 2##AK294780|KCNK2|3776|potassium channel, subfamily K, member 2##AK291483|KCNK2|3776|potassium channel, subfamily K, member 2##BC143586|KCNK2|3776|potassium channel, subfamily K, member 2##BC101693|KCNK2|3776|potassium channel, subfamily K, member 2##BC101695|KCNK2|3776|potassium channel, subfamily K, member 2##AF004711|KCNK2|3776|potassium channel, subfamily K, member 2##EF165334|KCNK2|3776|potassium channel, subfamily K, member 2##AF171068|KCNK2|3776|potassium channel, subfamily K, member 2##BC069462|KCNK2|3776|potassium channel, subfamily K, member 2##EF165335|KCNK2|3776|potassium channel, subfamily K, member 2##NM_001017424|KCNK2|3776|potassium channel, subfamily K, member 2##AF055580|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##AY481573|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##NM_007123|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##NM_206933|USH2A|7399|Usher syndrome 2A (autosomal recessive, mild)##HQ692853|ESRRG|2104|estrogen-related receptor gamma##AF117255|ESRRG|2104|estrogen-related receptor gamma##BC008218|ESRRG|2104|estrogen-related receptor gamma##AY388456|ESRRG|2104|estrogen-related receptor gamma##AK291647|ESRRG|2104|estrogen-related receptor gamma##AB020639|ESRRG|2104|estrogen-related receptor gamma##AK290945|ESRRG|2104|estrogen-related receptor gamma##BC064700|ESRRG|2104|estrogen-related receptor gamma##NM_001243515|ESRRG|2104|estrogen-related receptor gamma##NM_001243518|ESRRG|2104|estrogen-related receptor gamma##NM_001243519|ESRRG|2104|estrogen-related receptor gamma##NM_001438|ESRRG|2104|estrogen-related receptor gamma##AY388461|ESRRG|2104|estrogen-related receptor gamma##NM_001243514|ESRRG|2104|estrogen-related receptor gamma	0.997222	0.0	denovo_WM_7:9:0.707	denovo_WM_7:10:0.264
chr19	39047830	39048010	reg1004274.p2	5.363	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-123576	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-131048	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-154019	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	60668	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	61793	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	61896	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.0	0.0	
chr5	77840517	77840669	reg1012706.p1	5.363	+	TSC_hg19_v1_chr5_-_77806191 AK125227	-34397	-	D86961 BC136335 BC136336 AY309920 TSC_hg19_v1_chr5_-_77806179	-34539	-	NM_004866 TSC_hg19_v1_chr5_+_77656440 AF038966 AK304452 AK225172 BC009787 BC015065 AK298146 BC034048 AK290225 CR542286 CU677209	-184177	+	CR936660 TSC_hg19_v1_chr5_-_77845052	4430	-	TSC_hg19_v1_chr5_-_77944584 NM_005779	103973	-	J05225 TSC_hg19_v1_chr5_-_78281101	440495	-	AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##D86961|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##BC136335|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##BC136336|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AY309920|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##NM_004866|SCAMP1|9522|secretory carrier membrane protein 1##AF038966|SCAMP1|9522|secretory carrier membrane protein 1##AK304452|SCAMP1|9522|secretory carrier membrane protein 1##AK225172|SCAMP1|9522|secretory carrier membrane protein 1##BC009787|SCAMP1|9522|secretory carrier membrane protein 1##BC015065|SCAMP1|9522|secretory carrier membrane protein 1##AK298146|SCAMP1|9522|secretory carrier membrane protein 1##BC034048|SCAMP1|9522|secretory carrier membrane protein 1##AK290225|SCAMP1|9522|secretory carrier membrane protein 1##CR542286|SCAMP1|9522|secretory carrier membrane protein 1##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B	0.548569	0.0	denovo_WM_7:28:0.386
chr11	110671053	110671195	reg1008803.p2	5.362	+	TSC_hg19_v1_chr11_-_110583161 AK307602 AY496263 AY496264 NM_020809	-87839	-	TSC_hg19_v1_chr11_-_110582887 AB037812	-88199	-	AY496266 TSC_hg19_v1_chr11_-_110582834	-88321	-	BC039669 NM_198498	455582	+	TSC_hg19_v1_chr11_+_111170033 AK292195 NM_001136105	498909	+	CU689418 DQ890869 EU176491 AB464058 X83504 BC032549 Z47550 AK313573 TSC_hg19_v1_chr11_-_111250000	578828	-	AK307602|ARHGAP20|57569|Rho GTPase activating protein 20##AY496263|ARHGAP20|57569|Rho GTPase activating protein 20##AY496264|ARHGAP20|57569|Rho GTPase activating protein 20##NM_020809|ARHGAP20|57569|Rho GTPase activating protein 20##AB037812|ARHGAP20|57569|Rho GTPase activating protein 20##AY496266|ARHGAP20|57569|Rho GTPase activating protein 20##BC039669|C11orf53|341032|chromosome 11 open reading frame 53##NM_198498|C11orf53|341032|chromosome 11 open reading frame 53##AK292195|C11orf93|120376|chromosome 11 open reading frame 93##NM_001136105|C11orf93|120376|chromosome 11 open reading frame 93##DQ890869|POU2AF1|5450|POU class 2 associating factor 1##EU176491|POU2AF1|5450|POU class 2 associating factor 1##X83504|POU2AF1|5450|POU class 2 associating factor 1##BC032549|POU2AF1|5450|POU class 2 associating factor 1##Z47550|POU2AF1|5450|POU class 2 associating factor 1##AK313573|POU2AF1|5450|POU class 2 associating factor 1	1.848676	0.0	denovo_WM_7:43:0.299	denovo_WM_7:44:0.463
chr1	154763735	154763866	reg1006912.p1	5.362	+	TSC_hg19_v1_chr1_-_154600448 NM_001025107 AK097241	-163335	-	X98561 TSC_hg19_v1_chr1_-_154600438 AB209891 AF084516 BX640741 BX538232	-163386	-	AK304153 TSC_hg19_v1_chr1_-_154580680 X79449 NM_001111 NM_015840 NM_015841	-183100	-	CU692066 HQ448417 AF438203 BC042147 NM_170782	68462	-	BX649146 TSC_hg19_v1_chr1_-_154840541	76701	-	AF031815 Y08263 TSC_hg19_v1_chr1_-_154842763 AJ251016 AK310077 NM_001204087 NM_002249	78946	-	NM_001025107|ADAR|103|adenosine deaminase, RNA-specific##AK097241|ADAR|103|adenosine deaminase, RNA-specific##AB209891|ADAR|103|adenosine deaminase, RNA-specific##AF084516|ADAR|103|adenosine deaminase, RNA-specific##BX640741|ADAR|103|adenosine deaminase, RNA-specific##BX538232|ADAR|103|adenosine deaminase, RNA-specific##AK304153|ADAR|103|adenosine deaminase, RNA-specific##X79449|ADAR|103|adenosine deaminase, RNA-specific##NM_001111|ADAR|103|adenosine deaminase, RNA-specific##NM_015840|ADAR|103|adenosine deaminase, RNA-specific##NM_015841|ADAR|103|adenosine deaminase, RNA-specific##HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF031815|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##Y08263|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AJ251016|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AK310077|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001204087|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_002249|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	1.982219	0.0	denovo_WM_7:-30:0.780	denovo_WM_7:-85:0.247	denovo_WM_7:-86:0.247	denovo_WM_7:-87:0.247	denovo_WM_7:-88:0.247
chr8	22740937	22741113	reg1009248.p2	5.362	+	AK292464 AK313604 X63741 NM_004430 S40832 TSC_hg19_v1_chr8_-_22550853	-190241	-	AB529193 HQ258229 TSC_hg19_v1_chr8_-_22550508 BC112279 BC104765	-190520	-	AK294968 AK295834 NM_001199881	-190951	-	AB590982 AY730275 AY037148 BC020779 AY359109 NM_144962	44299	-	AK092617 BC034917 NM_001160036	103898	+	NM_001160037	112335	+	AK292464|EGR3|1960|early growth response 3##AK313604|EGR3|1960|early growth response 3##X63741|EGR3|1960|early growth response 3##NM_004430|EGR3|1960|early growth response 3##S40832|EGR3|1960|early growth response 3##HQ258229|EGR3|1960|early growth response 3##BC112279|EGR3|1960|early growth response 3##BC104765|EGR3|1960|early growth response 3##AK294968|EGR3|1960|early growth response 3##NM_001199881|EGR3|1960|early growth response 3##AY730275|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY037148|PEBP4|157310|phosphatidylethanolamine-binding protein 4##BC020779|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY359109|PEBP4|157310|phosphatidylethanolamine-binding protein 4##NM_144962|PEBP4|157310|phosphatidylethanolamine-binding protein 4##BC034917|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160036|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160037|RHOBTB2|23221|Rho-related BTB domain containing 2	0.990439	0.038328	denovo_WM_7:7:0.814
chr14	64765661	64765789	reg1009816.p2	5.361	+	AF051427 AF051428 AF060555 NM_001040275 NM_001437	-4623	-	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	-16062	-	NM_182910	-83054	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	39633	-	AK302747 NM_005956	89028	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	89371	+	AF051427|ESR2|2100|estrogen receptor 2 (ER beta)##AF051428|ESR2|2100|estrogen receptor 2 (ER beta)##AF060555|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001040275|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001437|ESR2|2100|estrogen receptor 2 (ER beta)##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	0.99153	0.0	denovo_WM_7:-5:0.426	denovo_WM_7:-6:0.426
chr15	85924657	85924785	reg1008107.p1	5.361	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	-830	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-258403	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-399395	+	AF127481 NM_144767	295546	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	413376	-	TSC_hg19_v1_chr15_-_86338178 NM_022480	413474	-	AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##BC075822|PDE8A|5151|phosphodiesterase 8A##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)##NM_022480|KLHL25|64410|kelch-like 25 (Drosophila)	1.998056	0.0	denovo_WM_7:4:0.457	denovo_WM_7:5:0.457
chr1	60471397	60471487	reg1009234.p1	5.360	+	BC032594 TSC_hg19_v1_chr1_-_60392478	-78973	-	AF144566 CU689440 DQ890862 DQ894017 AB528452 AB080265 NM_000775 U37143 AK315387 TSC_hg19_v1_chr1_-_60392444	-79057	-	AK292314 BC011621 NM_015888 AF044923 TSC_hg19_v1_chr1_+_60280620 BC107857 DQ891957 DQ895143 CU679990 AK097735	-190790	+	BC027878 AK124828 NM_152377	67991	-	AK092769 TSC_hg19_v1_chr1_+_61542908	1071414	+	TSC_hg19_v1_chr1_+_61542928 AK299289 NM_001145511	1071494	+	BC032594|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AF144566|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##DQ890862|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##DQ894017|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AB080265|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##NM_000775|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##U37143|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AK315387|CYP2J2|1573|cytochrome P450, family 2, subfamily J, polypeptide 2##AK292314|HOOK1|51361|hook homolog 1 (Drosophila)##BC011621|HOOK1|51361|hook homolog 1 (Drosophila)##NM_015888|HOOK1|51361|hook homolog 1 (Drosophila)##AF044923|HOOK1|51361|hook homolog 1 (Drosophila)##BC107857|HOOK1|51361|hook homolog 1 (Drosophila)##DQ891957|HOOK1|51361|hook homolog 1 (Drosophila)##DQ895143|HOOK1|51361|hook homolog 1 (Drosophila)##AK097735|HOOK1|51361|hook homolog 1 (Drosophila)##BC027878|C1orf87|127795|chromosome 1 open reading frame 87##AK124828|C1orf87|127795|chromosome 1 open reading frame 87##NM_152377|C1orf87|127795|chromosome 1 open reading frame 87##AK299289|NFIA|4774|nuclear factor I/A##NM_001145511|NFIA|4774|nuclear factor I/A	0.99852	0.0	denovo_WM_7:42:0.303	denovo_WM_7:43:0.303	denovo_WM_7:44:0.303
chr3	190974357	190974448	reg1006682.p1	5.360	+	AY398681 AY573933 BC128106 BC128107 NM_198184	-44081	+	NM_001146686	-393938	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	-742525	+	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	72764	+	AK090630 AX746546 NM_198152	73922	-	AY858112 NM_001083308	204549	+	AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##NM_001146686|GMNC|647309|geminin coiled-coil domain containing##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2	0.996865	0.0	denovo_WM_7:20:0.904
chr1	40651621	40651739	reg1006162.p2	5.359	+	TSC_hg19_v1_chr1_+_40627068 HQ258544	-24604	+	TSC_hg19_v1_chr1_+_40627058 AK307662 U22377 X58480	-24623	+	TSC_hg19_v1_chr1_+_40627044 BC113666 NM_012421	-24641	+	NM_001008740 BC108666	61925	+	BC012000 TSC_hg19_v1_chr1_-_40723621 AK054902	71935	-	TSC_hg19_v1_chr1_+_40723742 NM_005857 AB016068 BC037283	72096	+	HQ258544|RLF|6018|rearranged L-myc fusion##AK307662|RLF|6018|rearranged L-myc fusion##U22377|RLF|6018|rearranged L-myc fusion##BC113666|RLF|6018|rearranged L-myc fusion##NM_012421|RLF|6018|rearranged L-myc fusion##NM_001008740|TMCO2|127391|transmembrane and coiled-coil domains 2##BC108666|TMCO2|127391|transmembrane and coiled-coil domains 2##NM_005857|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##AB016068|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##BC037283|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)	0.0	0.0	
chr15	20637100	20637207	reg1010195.p2	5.359	+	None	None	None	None	None	None	None	None	None	TSC_hg19_v1_chr15_-_20711449 BC070076 BC033888 BC094757	74284	-	NM_001145004	109960	-	NM_207355 BC066981	434825	-	BC033888|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##BC094757|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##NM_001145004|GOLGA6L6|727832|golgin A6 family-like 6##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B	1.089385	0.0	denovo_WM_7:-32:0.313	denovo_WM_7:-33:0.313	denovo_WM_7:-34:0.313
chr9	35071463	35071643	reg1002172.p2	5.359	+	NM_001040410 NM_203299 BC045643 AK097595 AK302123	-29311	+	NM_001040411 NM_001040412	-30452	+	AF088982 TSC_hg19_v1_chr9_+_34990719	-80835	+	BC121794 BC122550 BC110913 TSC_hg19_v1_chr9_-_35072566 AF100752	1004	-	TSC_hg19_v1_chr9_-_35072623 BC096751 AK312310 BC012195 BC017171 BC021055	1063	-	TSC_hg19_v1_chr9_-_35072646 NM_007126	1137	-	NM_001040410|C9orf131|138724|chromosome 9 open reading frame 131##NM_203299|C9orf131|138724|chromosome 9 open reading frame 131##BC045643|C9orf131|138724|chromosome 9 open reading frame 131##AK097595|C9orf131|138724|chromosome 9 open reading frame 131##AK302123|C9orf131|138724|chromosome 9 open reading frame 131##NM_001040411|C9orf131|138724|chromosome 9 open reading frame 131##NM_001040412|C9orf131|138724|chromosome 9 open reading frame 131##AF088982|DNAJB5|25822|DnaJ (Hsp40) homolog, subfamily B, member 5##BC121794|VCP|7415|valosin containing protein##BC122550|VCP|7415|valosin containing protein##BC110913|VCP|7415|valosin containing protein##AF100752|VCP|7415|valosin containing protein##BC096751|VCP|7415|valosin containing protein##AK312310|VCP|7415|valosin containing protein##BC012195|VCP|7415|valosin containing protein##BC017171|VCP|7415|valosin containing protein##NM_007126|VCP|7415|valosin containing protein	0.0	0.0	
chr1	235439366	235439496	reg1007357.p1	5.358	+	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	-114868	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	-147200	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	-147342	-	AB210032 NM_001206794	51370	-	BC130418 BC143719 TSC_hg19_v1_chr1_-_235491484 BC062536 BX648820	52036	-	TSC_hg19_v1_chr1_-_235491491 BC048959	52060	-	D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AB210032|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001206794|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC130418|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC143719|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC062536|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BX648820|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##BC048959|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)	1.990879	0.0	denovo_WM_7:25:0.741	denovo_WM_7:26:0.250	denovo_WM_7:82:0.310	denovo_WM_7:83:0.310	denovo_WM_7:84:0.310
chr13	41887870	41888050	reg1009719.p2	5.357	+	NM_001110798 NM_018527 NM_024561 TSC_hg19_v1_chr13_+_41885376 BC064592 BC032318 AK291248 AK097224 BX640665 BC101719 BC101721 BC143506 CU689326	-2458	+	AK055086 AF072934 TSC_hg19_v1_chr13_-_41837713 BC027731 BC038427 BC042196 BC065496 NM_004294 AK294343	-50280	-	TSC_hg19_v1_chr13_-_41768706 AK299614 AL136782 AK315589 BC022033 FJ150424 NM_032138 AK091344 AX746923	-119335	-	TSC_hg19_v1_chr13_+_42031539 NM_014059	143591	+	TSC_hg19_v1_chr13_+_42031685 BC066334	143723	+	TSC_hg19_v1_chr13_+_42031690 BC038706 AF036549	143740	+	NM_001110798|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##NM_018527|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##NM_024561|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC064592|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC032318|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##AK291248|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##AK097224|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BX640665|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC101719|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC101721|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC143506|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##AK055086|MTRF1|9617|mitochondrial translational release factor 1##AF072934|MTRF1|9617|mitochondrial translational release factor 1##BC027731|MTRF1|9617|mitochondrial translational release factor 1##BC038427|MTRF1|9617|mitochondrial translational release factor 1##BC042196|MTRF1|9617|mitochondrial translational release factor 1##BC065496|MTRF1|9617|mitochondrial translational release factor 1##NM_004294|MTRF1|9617|mitochondrial translational release factor 1##AK294343|MTRF1|9617|mitochondrial translational release factor 1##AK299614|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AL136782|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK315589|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##BC022033|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##FJ150424|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##NM_032138|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK091344|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##NM_014059|C13orf15|28984|chromosome 13 open reading frame 15##BC066334|C13orf15|28984|chromosome 13 open reading frame 15##BC038706|C13orf15|28984|chromosome 13 open reading frame 15##AF036549|C13orf15|28984|chromosome 13 open reading frame 15	0.993529	0.0	denovo_WM_7:48:0.823
chr10	12741579	12741726	reg1007763.p1	5.356	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-349875	+	TSC_hg19_v1_chr10_+_12391709 BC035745	-349935	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	-350077	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	302047	-	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	400493	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	461916	+	AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10	1.187888	0.0	denovo_WM_7:3:0.760
chr21	39593733	39593880	reg1010117.p1	5.356	+	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	-100405	-	D87327 NM_002240 TSC_hg19_v1_chr21_-_39288761	-305095	-	NM_130438 NM_001396 U52373 D85759 U58496	-801186	+	BC013327 NM_002243	34857	+	D87291 NM_170736 AK292812	35123	+	NM_170737	50622	+	HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##D87327|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_002240|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_130438|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_001396|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U52373|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D85759|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U58496|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##D87291|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_170736|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##AK292812|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_170737|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	0.0	0.0	
chr3	52017661	52017776	reg1008544.p1	5.356	+	NM_000666 NM_001198895 NM_001198896 NM_001198897 NM_001198898 TSC_hg19_v1_chr3_+_52017550 AK298274 BC000545 BC003023 D16307 L07548 D14524 BC014112	-278	+	TSC_hg19_v1_chr3_+_52009079 NM_015407 AK298086 AK294015 BC002571 AY358201 AK308592 AL050015 EU832336 EU832421	-8626	+	AK096073 NM_001146314 NM_032750	-9073	-	TSC_hg19_v1_chr3_-_52029890 BC071663 U49083 U10248 Z49148 BC071909 BC070481	12163	-	TSC_hg19_v1_chr3_-_52029912 BC070190 AK289538 AK311884 D28412	12195	-	BC008926 NM_000992 TSC_hg19_v1_chr3_-_52029968	12245	-	NM_000666|ACY1|95|aminoacylase 1##NM_001198895|ACY1|95|aminoacylase 1##NM_001198896|ACY1|95|aminoacylase 1##NM_001198897|ACY1|95|aminoacylase 1##NM_001198898|ACY1|95|aminoacylase 1##AK298274|ACY1|95|aminoacylase 1##BC000545|ACY1|95|aminoacylase 1##BC003023|ACY1|95|aminoacylase 1##D16307|ACY1|95|aminoacylase 1##L07548|ACY1|95|aminoacylase 1##D14524|ACY1|95|aminoacylase 1##BC014112|ACY1|95|aminoacylase 1##NM_015407|ABHD14A|25864|abhydrolase domain containing 14A##AK298086|ABHD14A-ACY1|100526760|ABHD14A-ACY1 readthrough (non-protein coding)##AK294015|ABHD14A-ACY1|100526760|ABHD14A-ACY1 readthrough (non-protein coding)##BC002571|ABHD14A|25864|abhydrolase domain containing 14A##AY358201|ABHD14A|25864|abhydrolase domain containing 14A##AK308592|ABHD14A|25864|abhydrolase domain containing 14A##AL050015|ABHD14A|25864|abhydrolase domain containing 14A##EU832336|ABHD14A|25864|abhydrolase domain containing 14A##EU832421|ABHD14A|25864|abhydrolase domain containing 14A##AK096073|ABHD14B|84836|abhydrolase domain containing 14B##NM_001146314|ABHD14B|84836|abhydrolase domain containing 14B##NM_032750|ABHD14B|84836|abhydrolase domain containing 14B##BC071663|RPL29|6159|ribosomal protein L29##U49083|RPL29|6159|ribosomal protein L29##U10248|RPL29|6159|ribosomal protein L29##Z49148|RPL29|6159|ribosomal protein L29##BC071909|RPL29|6159|ribosomal protein L29##BC070481|RPL29|6159|ribosomal protein L29##BC070190|RPL29|6159|ribosomal protein L29##AK289538|RPL29|6159|ribosomal protein L29##AK311884|RPL29|6159|ribosomal protein L29##D28412|RPL29|6159|ribosomal protein L29##BC008926|RPL29|6159|ribosomal protein L29##NM_000992|RPL29|6159|ribosomal protein L29	1.901895	0.0	denovo_WM_7:2:0.822	denovo_WM_7:-16:0.524	denovo_WM_7:-20:0.275
chr5	53606271	53606417	reg1005807.p1	5.356	+	TSC_hg19_v1_chr5_-_53606337 CR457225 CU693132	-19	-	TSC_hg19_v1_chr5_+_52856474 AF020351 AK307973 CU675075	-749858	+	TSC_hg19_v1_chr5_+_52856468 NM_002495 BC005270	-749880	+	TSC_hg19_v1_chr5_-_53606389 AK000058 AK290886 BC026093 NM_019087 AX772814 AK311482	58	-	AK314215 NM_006308 U15590 Y17782 BC126272 BC132869 HQ258075 CR450314	145180	+	TSC_hg19_v1_chr5_+_53813588 AK304195 NM_001145427 BC060791 BC067860 NM_001102575 NM_052870	207201	+	CR457225|ARL15|54622|ADP-ribosylation factor-like 15##AF020351|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##AK307973|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##NM_002495|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##BC005270|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##AK000058|ARL15|54622|ADP-ribosylation factor-like 15##AK290886|ARL15|54622|ADP-ribosylation factor-like 15##BC026093|ARL15|54622|ADP-ribosylation factor-like 15##NM_019087|ARL15|54622|ADP-ribosylation factor-like 15##AK311482|ARL15|54622|ADP-ribosylation factor-like 15##AK314215|HSPB3|8988|heat shock 27kDa protein 3##NM_006308|HSPB3|8988|heat shock 27kDa protein 3##U15590|HSPB3|8988|heat shock 27kDa protein 3##Y17782|HSPB3|8988|heat shock 27kDa protein 3##BC126272|HSPB3|8988|heat shock 27kDa protein 3##BC132869|HSPB3|8988|heat shock 27kDa protein 3##HQ258075|HSPB3|8988|heat shock 27kDa protein 3##CR450314|HSPB3|8988|heat shock 27kDa protein 3##AK304195|SNX18|112574|sorting nexin 18##NM_001145427|SNX18|112574|sorting nexin 18##BC060791|SNX18|112574|sorting nexin 18##BC067860|SNX18|112574|sorting nexin 18##NM_001102575|SNX18|112574|sorting nexin 18##NM_052870|SNX18|112574|sorting nexin 18	0.0	0.0	
chr9	127383739	127383857	reg1007482.p1	5.356	+	TSC_hg19_v1_chr9_-_127269711 BC032501 NM_004959	-114094	-	AY278562 NM_001161808	-170376	+	U44425 AB464089 BT007218 CR456721 AK223007 TSC_hg19_v1_chr9_-_127177719 BC000509 AK223356 BC008414 D38048 AK098757 AK303460 AK314302 GU727627 NM_002799 AK308756	-206078	-	AK021895 AB074162 BC030772 TSC_hg19_v1_chr9_+_127420713 AB593023	36906	+	HQ692858 HQ709185 TSC_hg19_v1_chr9_-_127533591 U80802 AF004291 NM_001489 NM_033334 S83309 BC030600 BC042395 BC042406	149712	-	TSC_hg19_v1_chr9_+_127539438 AK074709 NM_182487 AB119055 AY358185	155702	+	BC032501|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##NM_004959|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##AY278562|GPR144|347088|G protein-coupled receptor 144##NM_001161808|GPR144|347088|G protein-coupled receptor 144##BT007218|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##CR456721|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK223007|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##BC000509|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK223356|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##BC008414|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##D38048|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK098757|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK303460|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK314302|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##GU727627|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##NM_002799|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK308756|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AB593023|MIR181A2HG|100379345|MIR181A2 host gene (non-protein coding)##HQ692858|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##HQ709185|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##U80802|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AF004291|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_001489|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_033334|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##S83309|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC030600|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042395|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042406|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AK074709|OLFML2A|169611|olfactomedin-like 2A##NM_182487|OLFML2A|169611|olfactomedin-like 2A##AB119055|OLFML2A|169611|olfactomedin-like 2A##AY358185|OLFML2A|169611|olfactomedin-like 2A	0.998191	0.0	denovo_WM_7:-27:0.719
chr12	54753211	54753388	reg1006814.p2	5.355	+	TSC_hg19_v1_chr12_+_54718927 AK223188 BC002849 AB463530 CU678240	-34362	+	TSC_hg19_v1_chr12_+_54718925 AB047848 AF086911	-34374	+	TSC_hg19_v1_chr12_+_54718922 AK293377 AK295325	-34379	+	AF237762 AF282693 TSC_hg19_v1_chr12_-_54758271 BC020614 NM_020370 AK290394	4951	-	AB528580 CR457327 TSC_hg19_v1_chr12_-_54778374	25037	-	AK296564 TSC_hg19_v1_chr12_-_54778485 AF304052 NM_015481	25175	-	AK223188|COPZ1|22818|coatomer protein complex, subunit zeta 1##BC002849|COPZ1|22818|coatomer protein complex, subunit zeta 1##AB047848|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF086911|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK293377|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK295325|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF237762|GPR84|53831|G protein-coupled receptor 84##AF282693|GPR84|53831|G protein-coupled receptor 84##BC020614|GPR84|53831|G protein-coupled receptor 84##NM_020370|GPR84|53831|G protein-coupled receptor 84##AK290394|GPR84|53831|G protein-coupled receptor 84##CR457327|ZNF385A|25946|zinc finger protein 385A##AK296564|ZNF385A|25946|zinc finger protein 385A##AF304052|ZNF385A|25946|zinc finger protein 385A##NM_015481|ZNF385A|25946|zinc finger protein 385A	0.277953	0.0	denovo_WM_7:-43:0.278
chr12	98622480	98622644	reg1009858.p1	5.355	+	BC027605 NM_001135175	-1321319	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	-1321531	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-1828245	-	TSC_hg19_v1_chr12_-_98897622 AK126817	275065	-	TSC_hg19_v1_chr12_+_98909388 NM_001032283 NM_001032284 NM_003276 BC050383 BC053675	286805	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	286845	+	BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK126817|LOC643770|643770|uncharacterized LOC643770##NM_001032283|TMPO|7112|thymopoietin##NM_001032284|TMPO|7112|thymopoietin##NM_003276|TMPO|7112|thymopoietin##BC050383|TMPO|7112|thymopoietin##BC053675|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin	0.995284	0.0	denovo_WM_7:21:0.573
chr2	179892392	179892501	reg1007659.p1	5.355	+	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	-220343	-	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	-232745	-	TSC_hg19_v1_chr2_+_179387947 AK093733	-504486	+	AL832777 NM_173648	22339	-	AY209190 TSC_hg19_v1_chr2_-_180129277 AK096232 NM_178123 BC047578	236959	-	AK057999 NM_001113398	534868	-	X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin##X98114|TTN|7273|titin##X98115|TTN|7273|titin##AK093733|LOC100506866|100506866|uncharacterized LOC100506866##AL832777|CCDC141|285025|coiled-coil domain containing 141##NM_173648|CCDC141|285025|coiled-coil domain containing 141##AY209190|SESTD1|91404|SEC14 and spectrin domains 1##AK096232|SESTD1|91404|SEC14 and spectrin domains 1##NM_178123|SESTD1|91404|SEC14 and spectrin domains 1##BC047578|SESTD1|91404|SEC14 and spectrin domains 1##AK057999|ZNF385B|151126|zinc finger protein 385B##NM_001113398|ZNF385B|151126|zinc finger protein 385B	1.990233	0.0	denovo_WM_7:-45:0.269	denovo_WM_7:-46:0.224	denovo_WM_7:-64:0.232	denovo_WM_7:-65:0.277
chr7	83824138	83824245	reg1010108.p2	5.355	+	NM_012431	-545713	-	AK303925 NM_001178129	-553445	-	TSC_hg19_v1_chr7_-_82792195 NM_014510 NM_033026 AK297315	-1031955	-	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	131	-	NM_152754	927055	-	AK309116 TSC_hg19_v1_chr7_-_84816296	992044	-	NM_012431|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##AK303925|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_001178129|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_014510|PCLO|27445|piccolo (presynaptic cytomatrix protein)##NM_033026|PCLO|27445|piccolo (presynaptic cytomatrix protein)##AK297315|PCLO|27445|piccolo (presynaptic cytomatrix protein)##NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##NM_152754|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##AK309116|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	1.969603	0.0	denovo_WM_7:-8:0.382	denovo_WM_7:-10:0.381	denovo_WM_7:-69:0.311	denovo_WM_7:-70:0.311	denovo_WM_7:-71:0.311
chr7	964464	964600	reg1008565.p1	5.355	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	-4018	-	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	-48262	+	TSC_hg19_v1_chr7_+_916188 NM_015949	-48329	+	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	29583	-	TSC_hg19_v1_chr7_-_994317 NM_006869	29781	-	TSC_hg19_v1_chr7_-_994377 AJ006422	29931	-	AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1##BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1	0.0	0.0	
chr10	12305826	12305948	reg1001405.p1	5.354	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-67661	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-67688	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-67705	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	85688	+	TSC_hg19_v1_chr10_+_12391709 BC035745	85830	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	85890	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	0.990128	0.0	denovo_WM_7:44:0.476	denovo_WM_7:47:0.388
chr14	42692300	42692431	reg1008637.p2	5.354	+	NM_152447 AK096627	-615598	+	BC053537 BC068566 BC030611 NM_203301	-2790704	-	TSC_hg19_v1_chr14_-_39901371 BX248772	-2791008	-	AK302615 CR933626 BC039878 CR933608 AK124110 NM_032135	2284110	-	TSC_hg19_v1_chr14_+_45366532 NM_001017923 BC105030 BC105032 AF250395	2674133	+	BC121009 BC121010 TSC_hg19_v1_chr14_-_45431102	2738731	-	NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##BX248772|FBXO33|254170|F-box protein 33##AK302615|FSCB|84075|fibrous sheath CABYR binding protein##CR933626|FSCB|84075|fibrous sheath CABYR binding protein##BC039878|FSCB|84075|fibrous sheath CABYR binding protein##CR933608|FSCB|84075|fibrous sheath CABYR binding protein##AK124110|FSCB|84075|fibrous sheath CABYR binding protein##NM_032135|FSCB|84075|fibrous sheath CABYR binding protein##NM_001017923|C14orf28|122525|chromosome 14 open reading frame 28##BC105030|C14orf28|122525|chromosome 14 open reading frame 28##BC105032|C14orf28|122525|chromosome 14 open reading frame 28##AF250395|C14orf28|122525|chromosome 14 open reading frame 28##BC121009|KLHL28|54813|kelch-like 28 (Drosophila)##BC121010|KLHL28|54813|kelch-like 28 (Drosophila)	0.0	0.0	
chr12	96588271	96588422	reg1001053.p1	5.352	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-79	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-220	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-158931	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	205637	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	205971	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	712685	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.173995	0.0	
chr2	11895773	11895906	reg1008833.p2	5.352	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-9064	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-85548	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-212996	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	961414	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	962077	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	962558	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.997767	0.0	denovo_WM_7:18:0.449	denovo_WM_7:19:0.449
chr15	23079616	23079751	reg1009847.p2	5.351	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-45267	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-45316	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-45349	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	6691	-	BC025678 NM_001142275	7159	-	TSC_hg19_v1_chr15_-_23115247 BC044583	35565	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	1.982491	0.0	denovo_WM_7:-63:0.306	denovo_WM_7:-64:0.306	denovo_WM_7:-65:0.306
chr3	11685074	11685211	reg1006920.p1	5.351	+	AK307708 TSC_hg19_v1_chr3_-_11623831 NM_001128220	-61309	-	TSC_hg19_v1_chr3_-_11610264 AK308761 NM_001128221	-74812	-	AK314504 TSC_hg19_v1_chr3_+_11314092 BC000091 AF094516	-371046	+	TSC_hg19_v1_chr3_-_11685397 NM_001128219	254	-	TSC_hg19_v1_chr3_-_11762012 D50911 BC001514 AK130542 BC000763 BC003038 NM_014667	76973	-	EU832515 EU832596 AK295839 TSC_hg19_v1_chr3_-_11888358 AK310993 BC015088 NM_138807 AK092776 AX747723 AK309733 AK303598	203117	-	AK307708|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128220|VGLL4|9686|vestigial like 4 (Drosophila)##AK308761|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128221|VGLL4|9686|vestigial like 4 (Drosophila)##AK314504|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##BC000091|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AF094516|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##NM_001128219|VGLL4|9686|vestigial like 4 (Drosophila)##D50911|VGLL4|9686|vestigial like 4 (Drosophila)##BC001514|VGLL4|9686|vestigial like 4 (Drosophila)##AK130542|VGLL4|9686|vestigial like 4 (Drosophila)##BC000763|VGLL4|9686|vestigial like 4 (Drosophila)##BC003038|VGLL4|9686|vestigial like 4 (Drosophila)##NM_014667|VGLL4|9686|vestigial like 4 (Drosophila)##EU832515|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##EU832596|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK295839|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK310993|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##BC015088|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##NM_138807|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK092776|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK309733|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK303598|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	0.982439	0.0	denovo_WM_7:8:0.888
chr1	108372135	108372270	reg1009831.p2	5.350	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	-141078	-	AB023193 TSC_hg19_v1_chr1_+_107683657	-688598	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-689460	+	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	135398	-	AJ619961 NM_213651 AK292567	363194	-	AF123303 EU832524 EU832606 AJ619987 TSC_hg19_v1_chr1_-_108742797 AK316506	370568	-	AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AF123303|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832524|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832606|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AJ619987|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK316506|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.0	0.0	
chr1	205180815	205180915	reg1008742.p2	5.350	+	TSC_hg19_v1_chr1_-_205180700 AY429674 BC060870 NM_015375 NM_199462	-146	-	TSC_hg19_v1_chr1_-_205180683 AB384485 AY208850 EU832787 GQ129280 BC072406 AK298011 BC117411 BC143603 BC053627	-192	-	TSC_hg19_v1_chr1_-_205091144 NM_001193272 NM_001193273 NM_005057	-89718	-	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	16218	+	AK293734 NM_001242925	17193	+	AY358192 TSC_hg19_v1_chr1_+_205236667	55769	+	AY429674|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC060870|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_015375|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_199462|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AY208850|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##EU832787|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##GQ129280|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC072406|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##AK298011|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC117411|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC143603|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##BC053627|DSTYK|25778|dual serine/threonine and tyrosine protein kinase##NM_001193272|RBBP5|5929|retinoblastoma binding protein 5##NM_001193273|RBBP5|5929|retinoblastoma binding protein 5##NM_005057|RBBP5|5929|retinoblastoma binding protein 5##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2	0.0	0.0	
chr12	1692499	1692679	reg1004878.p1	5.350	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-592137	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-633763	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-675507	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	10762	-	AY009399 NM_030775	33632	+	BC001749 NM_032642	45822	+	NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B	0.987627	0.0	denovo_WM_7:-33:0.334	denovo_WM_7:-34:0.496
chr2	65144613	65144723	reg1008176.p2	5.350	+	TSC_hg19_v1_chr2_-_65090764 AK097952	-53927	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-263621	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-263819	-	TSC_hg19_v1_chr2_-_65159574 BC037562	14909	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	70932	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	71823	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.996443	0.0	
chr6	1468764	1468877	reg1006072.p2	5.350	+	NM_001452 U13220 AB463646	-78695	+	BC053850 NM_033260	-156146	+	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	-775730	-	BC134421 NM_001453	141860	+	TSC_hg19_v1_chr6_+_1611545 BC169307	142754	+	AF040260 NM_001253846	707404	-	NM_001452|FOXF2|2295|forkhead box F2##U13220|FOXF2|2295|forkhead box F2##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##BC134421|FOXC1|2296|forkhead box C1##NM_001453|FOXC1|2296|forkhead box C1##BC169307|FOXC1|2296|forkhead box C1##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase	0.990736	0.0	denovo_WM_7:25:0.237	denovo_WM_7:26:0.237	denovo_WM_7:27:0.237	denovo_WM_7:28:0.237
chr15	66471128	66471291	reg1009661.p2	5.349	+	TSC_hg19_v1_chr15_-_66321664 AK054827	-149516	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-309362	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-386616	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	74868	-	NM_133375 AK295392 BC022089	114436	+	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	114690	+	AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like	1.660815	0.0	denovo_WM_7:23:0.833	denovo_WM_7:101:0.599
chr19	18654806	18654986	reg1007899.p1	5.349	+	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	-514	-	TSC_hg19_v1_chr19_-_18654341 AY278607 AK313363 BX647720	-573	-	TSC_hg19_v1_chr19_-_18653874 AK300571	-1119	-	NM_001171948 NM_001171949 NM_024069 TSC_hg19_v1_chr19_+_18668584 AK125365 AK098346 BC001080 BC006479	13714	+	TSC_hg19_v1_chr19_+_18668679 AF173381	13778	+	NM_001033930 NM_003333 TSC_hg19_v1_chr19_+_18682666 AF348700 BC101830 BC101832 BC143668 D28425 AK314717	27761	+	BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa##AY278607|FKBP8|23770|FK506 binding protein 8, 38kDa##AK313363|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647720|FKBP8|23770|FK506 binding protein 8, 38kDa##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_001171948|KXD1|79036|KxDL motif containing 1##NM_001171949|KXD1|79036|KxDL motif containing 1##NM_024069|KXD1|79036|KxDL motif containing 1##AK125365|KXD1|79036|KxDL motif containing 1##AK098346|KXD1|79036|KxDL motif containing 1##BC001080|KXD1|79036|KxDL motif containing 1##BC006479|KXD1|79036|KxDL motif containing 1##AF173381|KXD1|79036|KxDL motif containing 1##NM_001033930|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_003333|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AF348700|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101830|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101832|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC143668|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AK314717|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1	0.0	0.0	
chr1	92763856	92764000	reg1006465.p1	5.349	+	NM_001012425 BC130499 BC171742	-80353	+	NM_015237	-131320	+	AY346333 NM_183242 BC013922	-218052	+	TSC_hg19_v1_chr1_-_92764545 AJ302735 AJ347709 BC001257 AK295971 U73704 NM_053274	605	-	BC039014 NM_024813 TSC_hg19_v1_chr1_+_92764615 AK023212 BC031070 AK225054 CU691638	647	+	AB463058 DQ891273 DQ894461 AB209606 BC074866 BC074867 TSC_hg19_v1_chr1_-_92949213	185201	-	NM_001012425|C1orf146|388649|chromosome 1 open reading frame 146##BC130499|C1orf146|388649|chromosome 1 open reading frame 146##BC171742|C1orf146|388649|chromosome 1 open reading frame 146##NM_015237|KIAA1107|23285|KIAA1107##AY346333|BTBD8|284697|BTB (POZ) domain containing 8##NM_183242|BTBD8|284697|BTB (POZ) domain containing 8##BC013922|BTBD8|284697|BTB (POZ) domain containing 8##AJ302735|GLMN|11146|glomulin, FKBP associated protein##AJ347709|GLMN|11146|glomulin, FKBP associated protein##BC001257|GLMN|11146|glomulin, FKBP associated protein##AK295971|GLMN|11146|glomulin, FKBP associated protein##U73704|GLMN|11146|glomulin, FKBP associated protein##NM_053274|GLMN|11146|glomulin, FKBP associated protein##BC039014|RPAP2|79871|RNA polymerase II associated protein 2##NM_024813|RPAP2|79871|RNA polymerase II associated protein 2##AK023212|RPAP2|79871|RNA polymerase II associated protein 2##BC031070|RPAP2|79871|RNA polymerase II associated protein 2##AK225054|RPAP2|79871|RNA polymerase II associated protein 2##DQ891273|GFI1|2672|growth factor independent 1 transcription repressor##DQ894461|GFI1|2672|growth factor independent 1 transcription repressor##AB209606|GFI1|2672|growth factor independent 1 transcription repressor##BC074866|GFI1|2672|growth factor independent 1 transcription repressor##BC074867|GFI1|2672|growth factor independent 1 transcription repressor	0.988946	0.0	denovo_WM_7:-44:0.693
chr12	125386420	125386576	reg1009677.p2	5.348	+	TSC_hg19_v1_chr12_-_125348461 NM_001082959 NM_005505	-38025	-	TSC_hg19_v1_chr12_-_125348408 AB209436 BC022087 BC080647 AK304730	-38121	-	DQ892837 DQ896083 BC093732 BC112037 BC143319 Z22555 TSC_hg19_v1_chr12_-_125348344	-38193	-	AY732488 AY819759 BC008955 BC080583 AB209782 BC000449 AK056939 AK098827 AK129749 AK291539 BC039193 BC093445 AB009010 TSC_hg19_v1_chr12_-_125399197 AK026846	12675	-	NM_021009	13088	-	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	87146	-	NM_001082959|SCARB1|949|scavenger receptor class B, member 1##NM_005505|SCARB1|949|scavenger receptor class B, member 1##AB209436|SCARB1|949|scavenger receptor class B, member 1##BC022087|SCARB1|949|scavenger receptor class B, member 1##BC080647|SCARB1|949|scavenger receptor class B, member 1##AK304730|SCARB1|949|scavenger receptor class B, member 1##DQ892837|SCARB1|949|scavenger receptor class B, member 1##DQ896083|SCARB1|949|scavenger receptor class B, member 1##BC093732|SCARB1|949|scavenger receptor class B, member 1##BC112037|SCARB1|949|scavenger receptor class B, member 1##BC143319|SCARB1|949|scavenger receptor class B, member 1##Z22555|SCARB1|949|scavenger receptor class B, member 1##AY732488|UBC|7316|ubiquitin C##AY819759|UBC|7316|ubiquitin C##BC008955|UBC|7316|ubiquitin C##BC080583|UBC|7316|ubiquitin C##AB209782|UBC|7316|ubiquitin C##BC000449|UBC|7316|ubiquitin C##AK056939|UBC|7316|ubiquitin C##AK098827|UBC|7316|ubiquitin C##AK129749|UBC|7316|ubiquitin C##AK291539|UBC|7316|ubiquitin C##BC039193|UBC|7316|ubiquitin C##BC093445|UBC|7316|ubiquitin C##AB009010|UBC|7316|ubiquitin C##AK026846|UBC|7316|ubiquitin C##NM_021009|UBC|7316|ubiquitin C##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37	0.998455	0.0	
chr18	8550334	8550436	reg1008211.p1	5.348	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-603479	+	NM_001105244 NM_002845 TSC_hg19_v1_chr18_+_7567321	-983068	+	NM_001105581	-1319249	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	59051	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	59361	+	AK131528 NM_015210	166983	+	AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_001105244|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_002845|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_001105581|LRRC30|339291|leucine rich repeat containing 30##BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165	0.992244	0.0	denovo_WM_7:61:0.496	denovo_WM_7:62:0.496
chr19	58995827	58995937	reg1008947.p2	5.348	+	AY280800 TSC_hg19_v1_chr19_+_58987792 AK000633 AY279351 NM_017908 BC017206 AK026153	-8099	+	AK092341 TSC_hg19_v1_chr19_+_58978664	-17215	+	TSC_hg19_v1_chr19_+_58978445 NM_014347 BC007717 AF060503	-17454	+	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	27495	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	35071	-	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	35306	-	AY280800|ZNF446|55663|zinc finger protein 446##AK000633|ZNF446|55663|zinc finger protein 446##AY279351|ZNF446|55663|zinc finger protein 446##NM_017908|ZNF446|55663|zinc finger protein 446##BC017206|ZNF446|55663|zinc finger protein 446##AK026153|ZNF446|55663|zinc finger protein 446##AK092341|ZNF324|25799|zinc finger protein 324##NM_014347|ZNF324|25799|zinc finger protein 324##BC007717|ZNF324|25799|zinc finger protein 324##AF060503|ZNF324|25799|zinc finger protein 324##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45	0.998858	0.016674	denovo_WM_7:-39:0.314	denovo_WM_7:-40:0.314	denovo_WM_7:-41:0.314
chr8	68418206	68418351	reg1008307.p1	5.348	+	BC030256 TSC_hg19_v1_chr8_+_68256207	-162123	+	NM_006421 TSC_hg19_v1_chr8_-_68256017	-162313	-	TSC_hg19_v1_chr8_+_67976626 AM156947 BX649147 NM_024790 BC029445 AK096205 AB527449 AK127108	-441642	+	AF221594 AY044833 BC033684 NM_020361	240320	-	TSC_hg19_v1_chr8_+_68864347 BC068571 BC036055 AJ437636	446074	+	TSC_hg19_v1_chr8_+_68864598 AY508996 AY508997 NM_024870 NM_025170	446317	+	NM_006421|ARFGEF1|10565|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)##AM156947|CSPP1|79848|centrosome and spindle pole associated protein 1##BX649147|CSPP1|79848|centrosome and spindle pole associated protein 1##NM_024790|CSPP1|79848|centrosome and spindle pole associated protein 1##BC029445|CSPP1|79848|centrosome and spindle pole associated protein 1##AK096205|CSPP1|79848|centrosome and spindle pole associated protein 1##AK127108|CSPP1|79848|centrosome and spindle pole associated protein 1##AF221594|CPA6|57094|carboxypeptidase A6##AY044833|CPA6|57094|carboxypeptidase A6##BC033684|CPA6|57094|carboxypeptidase A6##NM_020361|CPA6|57094|carboxypeptidase A6##AJ437636|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508996|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508997|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_024870|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_025170|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	0.958389	0.0	denovo_WM_7:23:0.871
chr1	92269691	92269798	reg1009341.p2	5.347	+	TSC_hg19_v1_chr1_+_91966668 NM_001134420 AK312726	-303063	+	TSC_hg19_v1_chr1_+_91966424 NM_001134419 NM_003503 AK298963 BC111044 AB209337 AF015592 BC110526 BC110527 AB003698	-303325	+	TSC_hg19_v1_chr1_-_91870367 AB058637 AK294754 AK302582 AB058636 AB204867 NM_001017975	-399372	-	AK291345 BC126116 BC136295 BC143869 TSC_hg19_v1_chr1_-_92351559	81773	-	AK225799 TSC_hg19_v1_chr1_-_92351709 NM_001195683 NM_003243	82003	-	L07594 NM_001195684	101814	-	NM_001134420|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##AK312726|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##NM_001134419|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##NM_003503|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##AK298963|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##BC111044|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##AB209337|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##AF015592|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##BC110526|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##BC110527|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##AB003698|CDC7|8317|cell division cycle 7 homolog (S. cerevisiae)##AB058637|HFM1|164045|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)##AK294754|HFM1|164045|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)##AK302582|HFM1|164045|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)##AB058636|HFM1|164045|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)##AB204867|HFM1|164045|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)##NM_001017975|HFM1|164045|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)##AK291345|TGFBR3|7049|transforming growth factor, beta receptor III##BC126116|TGFBR3|7049|transforming growth factor, beta receptor III##BC136295|TGFBR3|7049|transforming growth factor, beta receptor III##BC143869|TGFBR3|7049|transforming growth factor, beta receptor III##AK225799|TGFBR3|7049|transforming growth factor, beta receptor III##NM_001195683|TGFBR3|7049|transforming growth factor, beta receptor III##NM_003243|TGFBR3|7049|transforming growth factor, beta receptor III##L07594|TGFBR3|7049|transforming growth factor, beta receptor III##NM_001195684|TGFBR3|7049|transforming growth factor, beta receptor III	0.384391	0.0	denovo_WM_7:1:0.217
chr2	32191843	32191958	reg1005560.p2	5.347	+	EU832809 GQ129244 HQ258121 M74047 EF560740 AK316597 BC112252 BC113641 NM_000348	-385897	-	TSC_hg19_v1_chr2_-_31637599 NM_000379	-554289	-	TSC_hg19_v1_chr2_-_31637569 U39487 D11456 U06117	-554329	-	TSC_hg19_v1_chr2_-_32235713 AF363446 BC018733 NM_001137602 NM_015955	43758	-	TSC_hg19_v1_chr2_-_32235732 AB041018	43828	-	TSC_hg19_v1_chr2_-_32235815 BC070046	43922	-	EU832809|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##GQ129244|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##HQ258121|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##M74047|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##EF560740|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##AK316597|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC112252|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC113641|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000348|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000379|XDH|7498|xanthine dehydrogenase##U39487|XDH|7498|xanthine dehydrogenase##D11456|XDH|7498|xanthine dehydrogenase##U06117|XDH|7498|xanthine dehydrogenase##AF363446|MEMO1|51072|mediator of cell motility 1##BC018733|MEMO1|51072|mediator of cell motility 1##NM_001137602|MEMO1|51072|mediator of cell motility 1##NM_015955|MEMO1|51072|mediator of cell motility 1##AB041018|MEMO1|51072|mediator of cell motility 1##BC070046|MEMO1|51072|mediator of cell motility 1	1.166746	0.0	denovo_WM_7:-77:0.583
chr3	16631405	16631516	reg1004949.p1	5.347	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-76236	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-76442	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-324752	+	BX648638 AK303026 NM_001190811	14810	-	U65918 U66726 U66078 BC027595 NM_001351	15506	-	AB029015 NM_001144382	294991	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	0.999824	0.0	denovo_WM_7:-45:0.457	denovo_WM_7:-46:0.457
chr3	8459209	8459322	reg1009841.p1	5.347	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-1556367	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-1556466	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-3229774	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	84065	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	84250	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	84316	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	0.879917	0.996557	CTCF.p2:-2:0.997	denovo_WM_7:27:0.500	denovo_WM_7:35:0.367
chrX	78887572	78887712	reg1006555.p2	5.346	+	AK313154 NM_001171581 NM_004867	-264615	-	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	-264859	-	AF345567 BC104922 BC104924 NM_032553	-461174	+	AK097514 NM_001109878 NM_001109879	382612	+	BC014194 NM_016954 AY035371 AB527983 CU680824	390112	+	AK128147 NM_001170574	703360	+	AK313154|ITM2A|9452|integral membrane protein 2A##NM_001171581|ITM2A|9452|integral membrane protein 2A##NM_004867|ITM2A|9452|integral membrane protein 2A##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A##AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##AK097514|TBX22|50945|T-box 22##NM_001109878|TBX22|50945|T-box 22##NM_001109879|TBX22|50945|T-box 22##BC014194|TBX22|50945|T-box 22##NM_016954|TBX22|50945|T-box 22##AY035371|TBX22|50945|T-box 22##AK128147|FAM46D|169966|family with sequence similarity 46, member D##NM_001170574|FAM46D|169966|family with sequence similarity 46, member D	0.996408	0.0	
chr16	2932075	2932202	reg1008891.p1	5.345	+	CU679465 AB010779 AF321182 BC009726 AY358396 NM_022119	-24001	-	NM_145252 AY359021 JN411265 BC009722 AB528168 AM392915 AM393869 EF067313 AK311810	-51900	+	BC074999 BC075000 TSC_hg19_v1_chr16_+_2867242 AY359034 AF058300 AB031329 AB031330	-64892	+	NM_001142499 NM_001142500 NM_138439 TSC_hg19_v1_chr16_+_2933215 BC014089	1118	+	TSC_hg19_v1_chr16_+_2961983 BC028572 NM_020912 NM_032296	29826	+	TSC_hg19_v1_chr16_+_2961994 AB046772	29859	+	AB010779|PRSS22|64063|protease, serine, 22##AF321182|PRSS22|64063|protease, serine, 22##BC009726|PRSS22|64063|protease, serine, 22##AY358396|PRSS22|64063|protease, serine, 22##NM_022119|PRSS22|64063|protease, serine, 22##NM_145252|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AY359021|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##JN411265|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC009722|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM392915|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM393869|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##EF067313|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AK311810|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC074999|PRSS21|10942|protease, serine, 21 (testisin)##BC075000|PRSS21|10942|protease, serine, 21 (testisin)##AY359034|PRSS21|10942|protease, serine, 21 (testisin)##AF058300|PRSS21|10942|protease, serine, 21 (testisin)##AB031329|PRSS21|10942|protease, serine, 21 (testisin)##AB031330|PRSS21|10942|protease, serine, 21 (testisin)##NM_001142499|FLYWCH2|114984|FLYWCH family member 2##NM_001142500|FLYWCH2|114984|FLYWCH family member 2##NM_138439|FLYWCH2|114984|FLYWCH family member 2##BC014089|FLYWCH2|114984|FLYWCH family member 2##BC028572|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_020912|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_032296|FLYWCH1|84256|FLYWCH-type zinc finger 1##AB046772|FLYWCH1|84256|FLYWCH-type zinc finger 1	0.999635	0.0	denovo_WM_7:-21:0.740
chr6	17702185	17702330	reg1007919.p1	5.345	+	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	-101658	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-308475	+	AK055391 NM_153020 BC104808 BC104810 BC040928	-419253	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	4645	-	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	285503	-	TSC_hg19_v1_chr6_-_17987867 BC062673 NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113	285609	-	NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK055391|RBM24|221662|RNA binding motif protein 24##NM_153020|RBM24|221662|RNA binding motif protein 24##BC104808|RBM24|221662|RNA binding motif protein 24##BC104810|RBM24|221662|RNA binding motif protein 24##BC040928|RBM24|221662|RNA binding motif protein 24##Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A##BC062673|KIF13A|63971|kinesin family member 13A##NM_001105566|KIF13A|63971|kinesin family member 13A##NM_001105567|KIF13A|63971|kinesin family member 13A##NM_001105568|KIF13A|63971|kinesin family member 13A##NM_001243423|KIF13A|63971|kinesin family member 13A##NM_022113|KIF13A|63971|kinesin family member 13A	0.0	0.959581	CTCF.p2:-3:0.960
chr14	100756131	100756298	reg1008546.p1	5.344	+	TSC_hg19_v1_chr14_+_100705474 BC037308 M76541 BC020324 BC065366 AB464361 DQ891638 EU176600 CU691478	-50708	+	TSC_hg19_v1_chr14_+_100705309 M77698	-50902	+	NM_003403 TSC_hg19_v1_chr14_+_100705177	-51072	+	TSC_hg19_v1_chr14_-_100772779 AK096294 AK123821 AK310069 BC142945 AK172788 BX247983 NM_001039355	16625	-	AK092001 AX747302 TSC_hg19_v1_chr14_+_100789675 AB073385 AY569438 AY570298 NM_207117 BX248260 BC137253 BC137254 BC144549	33472	+	X59892 TSC_hg19_v1_chr14_-_100841685 BC095453 M61715	85477	-	BC037308|YY1|7528|YY1 transcription factor##M76541|YY1|7528|YY1 transcription factor##BC020324|YY1|7528|YY1 transcription factor##BC065366|YY1|7528|YY1 transcription factor##DQ891638|YY1|7528|YY1 transcription factor##EU176600|YY1|7528|YY1 transcription factor##M77698|YY1|7528|YY1 transcription factor##NM_003403|YY1|7528|YY1 transcription factor##AK096294|SLC25A29|123096|solute carrier family 25, member 29##AK123821|SLC25A29|123096|solute carrier family 25, member 29##AK310069|SLC25A29|123096|solute carrier family 25, member 29##AK172788|SLC25A29|123096|solute carrier family 25, member 29##BX247983|SLC25A29|123096|solute carrier family 25, member 29##NM_001039355|SLC25A29|123096|solute carrier family 25, member 29##AK092001|SLC25A47|283600|solute carrier family 25, member 47##AB073385|SLC25A47|283600|solute carrier family 25, member 47##AY569438|SLC25A47|283600|solute carrier family 25, member 47##AY570298|SLC25A47|283600|solute carrier family 25, member 47##NM_207117|SLC25A47|283600|solute carrier family 25, member 47##BX248260|SLC25A47|283600|solute carrier family 25, member 47##BC137253|SLC25A47|283600|solute carrier family 25, member 47##BC137254|SLC25A47|283600|solute carrier family 25, member 47##BC144549|SLC25A47|283600|solute carrier family 25, member 47##X59892|WARS|7453|tryptophanyl-tRNA synthetase##BC095453|WARS|7453|tryptophanyl-tRNA synthetase##M61715|WARS|7453|tryptophanyl-tRNA synthetase	0.999414	0.0	
chr16	48644240	48644362	reg1005038.p1	5.344	+	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	-185	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-225049	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-244510	-	AB527638 TSC_hg19_v1_chr16_-_49315397	671092	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	671199	-	M58583 TSC_hg19_v1_chr16_-_49315772 AK314276 NM_004352	671433	-	BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor##M58583|CBLN1|869|cerebellin 1 precursor##AK314276|CBLN1|869|cerebellin 1 precursor##NM_004352|CBLN1|869|cerebellin 1 precursor	0.0	0.0	
chr17	26990716	26990869	reg1006564.p1	5.344	+	TSC_hg19_v1_chr17_+_26989239 BC150268 D79984 NM_003170 BC136522 BC136524	-1525	+	TSC_hg19_v1_chr17_+_26989222 AL833607	-1583	+	TSC_hg19_v1_chr17_-_26989199 NM_006923	-1596	-	BC029574 NM_152465	48079	-	TSC_hg19_v1_chr17_-_27044728 BC016841 AK074689 NM_001144942 NM_031934	54025	-	AF327350 AK297850 AK027312 AJ277106 AK304633 BC066904 NM_001142624 NM_001142625 NM_001144943	54436	-	BC150268|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##D79984|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##NM_003170|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##BC136522|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##BC136524|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##AL833607|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##NM_006923|SDF2|6388|stromal cell-derived factor 2##BC029574|PROCA1|147011|protein interacting with cyclin A1##NM_152465|PROCA1|147011|protein interacting with cyclin A1##BC016841|RAB34|83871|RAB34, member RAS oncogene family##AK074689|RAB34|83871|RAB34, member RAS oncogene family##NM_001144942|RAB34|83871|RAB34, member RAS oncogene family##NM_031934|RAB34|83871|RAB34, member RAS oncogene family##AF327350|RAB34|83871|RAB34, member RAS oncogene family##AK297850|RAB34|83871|RAB34, member RAS oncogene family##AK027312|RAB34|83871|RAB34, member RAS oncogene family##AJ277106|RAB34|83871|RAB34, member RAS oncogene family##AK304633|RAB34|83871|RAB34, member RAS oncogene family##BC066904|RAB34|83871|RAB34, member RAS oncogene family##NM_001142624|RAB34|83871|RAB34, member RAS oncogene family##NM_001142625|RAB34|83871|RAB34, member RAS oncogene family##NM_001144943|RAB34|83871|RAB34, member RAS oncogene family	0.991053	0.0	denovo_WM_7:62:0.330	denovo_WM_7:63:0.330	denovo_WM_7:64:0.330
chr2	218911680	218911772	reg1006219.p2	5.344	+	TSC_hg19_v1_chr2_-_218867719 AK309785	-44003	-	AK001785 TSC_hg19_v1_chr2_-_218843551	-68180	-	TSC_hg19_v1_chr2_-_218808794 BC140942 AK300345 NM_022648	-102945	-	NM_198483	22011	+	U11872 NM_001168298	78278	+	NM_001557 U11874 L19593 U11875 BC037961 AK290906 AK312664	79063	+	AK309785|TNS1|7145|tensin 1##AK001785|TNS1|7145|tensin 1##BC140942|TNS1|7145|tensin 1##AK300345|TNS1|7145|tensin 1##NM_022648|TNS1|7145|tensin 1##NM_198483|RUFY4|285180|RUN and FYVE domain containing 4##U11872|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001168298|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001557|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11874|CXCR2|3579|chemokine (C-X-C motif) receptor 2##L19593|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11875|CXCR2|3579|chemokine (C-X-C motif) receptor 2##BC037961|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK290906|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK312664|CXCR2|3579|chemokine (C-X-C motif) receptor 2	0.999785	0.0	
chr5	133861304	133861413	reg1001639.p2	5.344	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-19068	+	TSC_hg19_v1_chr5_-_133747599 NM_080656	-113759	-	TSC_hg19_v1_chr5_-_133747573 BC018086 BC008293	-113804	-	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	5	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	447	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	107139	-	NM_080656|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##BC018086|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##BC008293|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)	0.239666	0.0	denovo_WM_7:-42:0.240
chr5	35869931	35870041	reg1010006.p2	5.344	+	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	-12953	+	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	-251977	+	NM_000949	-639164	-	NM_001042625 BC017586 NM_144647	68822	-	CU686633 BC068446 AK308046 AK290809 AK057066 AK303770 AK315851 AK296136 NM_152404	121452	-	BC035012 NM_001171873	131141	-	BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##NM_000949|PRLR|5618|prolactin receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like##BC068446|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK308046|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK290809|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK057066|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK303770|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK315851|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK296136|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##NM_152404|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##BC035012|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##NM_001171873|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1	0.0	0.0	
chr9	84594270	84594450	reg1008909.p1	5.344	+	NM_207416 AK308327	-35917	+	NM_001145197 AK125847 AK308327	-50989	+	TSC_hg19_v1_chr9_-_84304463 AB209854	-289933	-	AK128831 NM_001001670	9326	+	AK290986 TSC_hg19_v1_chr9_-_85677861	1083465	-	BC023566 NM_152573 TSC_hg19_v1_chr9_-_85678058 AK056176	1083706	-	NM_207416|FAM75D3|389762|family with sequence similarity 75, member D3##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AK128831|FAM75D1|389763|family with sequence similarity 75, member D1##NM_001001670|FAM75D1|389763|family with sequence similarity 75, member D1##AK290986|RASEF|158158|RAS and EF-hand domain containing##BC023566|RASEF|158158|RAS and EF-hand domain containing##NM_152573|RASEF|158158|RAS and EF-hand domain containing##AK056176|RASEF|158158|RAS and EF-hand domain containing	0.0	0.0	
chr12	12876174	12876300	reg1007359.p1	5.343	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	-6111	+	AK096388 NM_006143	-27117	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-111354	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	2619	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	62340	+	AK310501 TSC_hg19_v1_chr12_+_12966285 AK302536 AL136666 NM_016355 NM_201224 AL833469 AK054574 BC068009 AB462951 AJ276704 AM393320 AM393714 AK225144 AF190165 BC009379 AK222940 AF078843 EF036507	90053	+	AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1##AK310501|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK302536|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL136666|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_016355|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##NM_201224|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AL833469|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK054574|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC068009|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AJ276704|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393320|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AM393714|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK225144|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF190165|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##BC009379|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AK222940|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##AF078843|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47##EF036507|DDX47|51202|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	0.99751	0.0	
chr12	96721250	96721430	reg1010514.p1	5.343	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-133073	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-133214	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-291925	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	72643	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	72977	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	579691	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.988672	0.0	denovo_WM_7:-7:0.684
chr1	93470951	93471096	reg1009103.p1	5.343	+	TSC_hg19_v1_chr1_-_93427020 BC070342 NM_001006605 NM_001252269 NM_001252270 NM_001252273	-43985	-	TSC_hg19_v1_chr1_-_93399531 BX648424	-71431	-	NM_001252271	-128317	-	TSC_hg19_v1_chr1_+_93544836 NM_001164391 NM_001164392 NM_001164393 NM_007358 AK290318 AK302900 AJ010014 AK302776 AF086908 BC010013 BC001897	73810	+	AY359039 BC016556 AF151858 TSC_hg19_v1_chr1_-_93645971 AK293308 BC016365 AK312787 CR936808 AK125882	174964	-	BC070051 NM_001167830 NM_016040	175222	-	BC070342|FAM69A|388650|family with sequence similarity 69, member A##NM_001006605|FAM69A|388650|family with sequence similarity 69, member A##NM_001252269|FAM69A|388650|family with sequence similarity 69, member A##NM_001252270|FAM69A|388650|family with sequence similarity 69, member A##NM_001252273|FAM69A|388650|family with sequence similarity 69, member A##NM_001252271|FAM69A|388650|family with sequence similarity 69, member A##NM_001164391|MTF2|22823|metal response element binding transcription factor 2##NM_001164392|MTF2|22823|metal response element binding transcription factor 2##NM_001164393|MTF2|22823|metal response element binding transcription factor 2##NM_007358|MTF2|22823|metal response element binding transcription factor 2##AK290318|MTF2|22823|metal response element binding transcription factor 2##AK302900|MTF2|22823|metal response element binding transcription factor 2##AJ010014|MTF2|22823|metal response element binding transcription factor 2##AK302776|MTF2|22823|metal response element binding transcription factor 2##AF086908|MTF2|22823|metal response element binding transcription factor 2##BC010013|MTF2|22823|metal response element binding transcription factor 2##BC001897|MTF2|22823|metal response element binding transcription factor 2##AY359039|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016556|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AF151858|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK293308|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016365|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK312787|TMED5|50999|transmembrane emp24 protein transport domain containing 5##CR936808|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK125882|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC070051|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_001167830|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_016040|TMED5|50999|transmembrane emp24 protein transport domain containing 5	0.0	0.0	
chr5	100241323	100241503	reg1008149.p1	5.343	+	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-2485	-	AF529367 TSC_hg19_v1_chr5_+_99871306	-370143	+	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	-370340	+	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	1390695	-	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	1593220	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	1960117	+	L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AF529367|FAM174A|345757|family with sequence similarity 174, member A##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase	1.936759	0.0	denovo_WM_7:49:0.707	denovo_WM_7:65:0.290	denovo_WM_7:66:0.290	denovo_WM_7:67:0.314
chr7	25007941	25008040	reg1007348.p1	5.343	+	TSC_hg19_v1_chr7_-_24797557 NM_001127454 NM_004403	-210393	-	TSC_hg19_v1_chr7_-_24797316 BC125065 BC125066 AF073308	-210651	-	TSC_hg19_v1_chr7_-_24797055 AK290775 AK314402 NM_001127453	-210923	-	AF323727 AY008372 TSC_hg19_v1_chr7_-_25019775 AF392444 BC017731 NM_015550 NM_145320 NM_145321 NM_145322 AB014604	11754	-	AL713681 BC005299 BC008475 BC008477 BC009578 BC009579 BC009582 BC009587 BC009602 BC014359 BC014361 BC015130 BC016006 BC021994 BC022330 BC067222 BC068464 BC070156 BC071761 TSC_hg19_v1_chr7_-_25164884 BC070346 BC009607	156887	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	156950	-	NM_001127454|DFNA5|1687|deafness, autosomal dominant 5##NM_004403|DFNA5|1687|deafness, autosomal dominant 5##BC125065|DFNA5|1687|deafness, autosomal dominant 5##BC125066|DFNA5|1687|deafness, autosomal dominant 5##AF073308|DFNA5|1687|deafness, autosomal dominant 5##AK290775|DFNA5|1687|deafness, autosomal dominant 5##AK314402|DFNA5|1687|deafness, autosomal dominant 5##NM_001127453|DFNA5|1687|deafness, autosomal dominant 5##AF323727|OSBPL3|26031|oxysterol binding protein-like 3##AY008372|OSBPL3|26031|oxysterol binding protein-like 3##AF392444|OSBPL3|26031|oxysterol binding protein-like 3##BC017731|OSBPL3|26031|oxysterol binding protein-like 3##NM_015550|OSBPL3|26031|oxysterol binding protein-like 3##NM_145320|OSBPL3|26031|oxysterol binding protein-like 3##NM_145321|OSBPL3|26031|oxysterol binding protein-like 3##NM_145322|OSBPL3|26031|oxysterol binding protein-like 3##AB014604|OSBPL3|26031|oxysterol binding protein-like 3##AL713681|CYCS|54205|cytochrome c, somatic##BC005299|CYCS|54205|cytochrome c, somatic##BC008475|CYCS|54205|cytochrome c, somatic##BC008477|CYCS|54205|cytochrome c, somatic##BC009578|CYCS|54205|cytochrome c, somatic##BC009579|CYCS|54205|cytochrome c, somatic##BC009582|CYCS|54205|cytochrome c, somatic##BC009587|CYCS|54205|cytochrome c, somatic##BC009602|CYCS|54205|cytochrome c, somatic##BC014359|CYCS|54205|cytochrome c, somatic##BC014361|CYCS|54205|cytochrome c, somatic##BC015130|CYCS|54205|cytochrome c, somatic##BC016006|CYCS|54205|cytochrome c, somatic##BC021994|CYCS|54205|cytochrome c, somatic##BC022330|CYCS|54205|cytochrome c, somatic##BC067222|CYCS|54205|cytochrome c, somatic##BC068464|CYCS|54205|cytochrome c, somatic##BC070156|CYCS|54205|cytochrome c, somatic##BC071761|CYCS|54205|cytochrome c, somatic##BC070346|CYCS|54205|cytochrome c, somatic##BC009607|CYCS|54205|cytochrome c, somatic##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic	0.981704	0.0	denovo_WM_7:35:0.486	denovo_WM_7:36:0.496
chr9	131580352	131580439	reg1001470.p1	5.343	+	TSC_hg19_v1_chr9_+_131549578 AK289777 BC150311 AK123828 BC014898 BC132817 BC136509 AK001605 BC140080 BC143010 HQ258408 AB449899	-30799	+	NM_018201 TSC_hg19_v1_chr9_+_131549531	-30875	+	TSC_hg19_v1_chr9_-_131534207 BC052563 NM_006336	-46137	-	TSC_hg19_v1_chr9_+_131580758 BC016351 NM_004435 X79444 BC004922 AB590755	444	+	CU687792 BC010579 BC021273 BC046133 TSC_hg19_v1_chr9_-_131592067 BC056890 BC033677 BC063644	11670	-	AF161459 TSC_hg19_v1_chr9_-_131592073	11677	-	AK289777|TBC1D13|54662|TBC1 domain family, member 13##BC150311|TBC1D13|54662|TBC1 domain family, member 13##AK123828|TBC1D13|54662|TBC1 domain family, member 13##BC014898|TBC1D13|54662|TBC1 domain family, member 13##BC132817|TBC1D13|54662|TBC1 domain family, member 13##BC136509|TBC1D13|54662|TBC1 domain family, member 13##AK001605|TBC1D13|54662|TBC1 domain family, member 13##BC140080|TBC1D13|54662|TBC1 domain family, member 13##BC143010|TBC1D13|54662|TBC1 domain family, member 13##HQ258408|TBC1D13|54662|TBC1 domain family, member 13##AB449899|TBC1D13|54662|TBC1 domain family, member 13##NM_018201|TBC1D13|54662|TBC1 domain family, member 13##BC052563|ZER1|10444|zer-1 homolog (C. elegans)##NM_006336|ZER1|10444|zer-1 homolog (C. elegans)##BC016351|ENDOG|2021|endonuclease G##NM_004435|ENDOG|2021|endonuclease G##X79444|ENDOG|2021|endonuclease G##BC004922|ENDOG|2021|endonuclease G##BC010579|C9orf114|51490|chromosome 9 open reading frame 114##BC021273|C9orf114|51490|chromosome 9 open reading frame 114##BC046133|C9orf114|51490|chromosome 9 open reading frame 114##BC056890|C9orf114|51490|chromosome 9 open reading frame 114##BC033677|C9orf114|51490|chromosome 9 open reading frame 114##BC063644|C9orf114|51490|chromosome 9 open reading frame 114##AF161459|C9orf114|51490|chromosome 9 open reading frame 114	0.993975	0.0	
chr15	75151875	75152034	reg1009076.p1	5.342	+	TSC_hg19_v1_chr15_-_75135524 BC157884 NM_001099436 AL117482	-16349	-	TSC_hg19_v1_chr15_-_75135498 AK293181 BC036117	-16454	-	BC048289 TSC_hg19_v1_chr15_-_75135479	-16475	-	CR456800 AF005038 TSC_hg19_v1_chr15_-_75165693 AK315516 BC001376 BC004385 NM_005697 AK096794 AK096376 AK291884	13701	-	TSC_hg19_v1_chr15_+_75182388 AK294030 AK301370 AK302354 BX648475 AF504648 AK225149 BC046357 AK292374 BC017351 NM_002435 X76057 CU692334 AB529030	30438	+	AK025373 TSC_hg19_v1_chr15_-_75194610	42622	-	BC157884|ULK3|25989|unc-51-like kinase 3 (C. elegans)##NM_001099436|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AL117482|ULK3|25989|unc-51-like kinase 3 (C. elegans)##AK293181|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC036117|ULK3|25989|unc-51-like kinase 3 (C. elegans)##BC048289|ULK3|25989|unc-51-like kinase 3 (C. elegans)##CR456800|SCAMP2|10066|secretory carrier membrane protein 2##AF005038|SCAMP2|10066|secretory carrier membrane protein 2##AK315516|SCAMP2|10066|secretory carrier membrane protein 2##BC001376|SCAMP2|10066|secretory carrier membrane protein 2##BC004385|SCAMP2|10066|secretory carrier membrane protein 2##NM_005697|SCAMP2|10066|secretory carrier membrane protein 2##AK096794|SCAMP2|10066|secretory carrier membrane protein 2##AK096376|SCAMP2|10066|secretory carrier membrane protein 2##AK291884|SCAMP2|10066|secretory carrier membrane protein 2##AK294030|MPI|4351|mannose phosphate isomerase##AK301370|MPI|4351|mannose phosphate isomerase##AK302354|MPI|4351|mannose phosphate isomerase##BX648475|MPI|4351|mannose phosphate isomerase##AF504648|MPI|4351|mannose phosphate isomerase##AK225149|MPI|4351|mannose phosphate isomerase##BC046357|MPI|4351|mannose phosphate isomerase##AK292374|MPI|4351|mannose phosphate isomerase##BC017351|MPI|4351|mannose phosphate isomerase##NM_002435|MPI|4351|mannose phosphate isomerase##X76057|MPI|4351|mannose phosphate isomerase##AK025373|C15orf17|57184|chromosome 15 open reading frame 17	0.999132	0.0	denovo_WM_7:11:0.239	denovo_WM_7:12:0.239	denovo_WM_7:13:0.239	denovo_WM_7:14:0.239
chr16	21841259	21841379	reg1009559.p1	5.342	+	BC009198 BC068999 TSC_hg19_v1_chr16_-_21831777 BC070157	-9559	-	AK093062 AX747895 NM_170664 BC040551 AK302733	-125002	+	AK125840 NM_001161683	-145570	+	AK316459 AK296301 AK303500 AK301703 AK294452 TSC_hg19_v1_chr16_-_21854901	13509	-	NM_003366 AK307535 TSC_hg19_v1_chr16_+_21964618	123309	+	TSC_hg19_v1_chr16_+_21964679 J04973 BC003136	123366	+	BC009198|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC068999|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC070157|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##AK093062|OTOA|146183|otoancorin##NM_170664|OTOA|146183|otoancorin##BC040551|OTOA|146183|otoancorin##AK302733|OTOA|146183|otoancorin##AK125840|OTOA|146183|otoancorin##NM_001161683|OTOA|146183|otoancorin##AK316459|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296301|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AK303500|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK301703|LOC613037|613037|nuclear pore complex interacting protein pseudogene##AK294452|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_003366|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK307535|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##J04973|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##BC003136|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II	0.997688	0.0	denovo_WM_7:-6:0.238	denovo_WM_7:-7:0.238	denovo_WM_7:-8:0.238	denovo_WM_7:-9:0.238
chr19	10769982	10770117	reg1005538.p2	5.342	+	TSC_hg19_v1_chr19_+_10765110 AF141870	-4881	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	-5003	+	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	-5109	+	AB528039 AF167569 AF167570 CU687952 HQ322263 HQ322264 HQ322265 TSC_hg19_v1_chr19_+_10781789	11677	+	TSC_hg19_v1_chr19_+_10791025 AJ271747	20999	+	NM_031209 TSC_hg19_v1_chr19_+_10812129 AK314308 AK057877 AK225173 AK294166 AF302783 AF370379 BC015350 AF302784	42109	+	AF141870|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF167569|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AF167570|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322263|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##HQ322265|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_031209|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK314308|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK057877|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK225173|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AK294166|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302783|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF370379|QTRT1|81890|queuine tRNA-ribosyltransferase 1##BC015350|QTRT1|81890|queuine tRNA-ribosyltransferase 1##AF302784|QTRT1|81890|queuine tRNA-ribosyltransferase 1	1.019683	0.0	
chr10	14803527	14803658	reg1007405.p2	5.341	+	TSC_hg19_v1_chr10_-_14646423 BC072452	-157163	-	TSC_hg19_v1_chr10_-_14646259 BC064407	-157275	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	-430742	-	AK127413 NM_031453	13303	-	TSC_hg19_v1_chr10_-_14880025 BC133042 BC133044 BC144619 NM_001029954 AK301259	76430	-	TSC_hg19_v1_chr10_+_14880314 BC108738 NM_016299 AK225265 AK225651 AK302452 AK000880 BC065281 BC038845	76643	+	BC072452|FAM107B|83641|family with sequence similarity 107, member B##BC064407|FAM107B|83641|family with sequence similarity 107, member B##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##AK127413|FAM107B|83641|family with sequence similarity 107, member B##NM_031453|FAM107B|83641|family with sequence similarity 107, member B##BC133042|CDNF|441549|cerebral dopamine neurotrophic factor##BC133044|CDNF|441549|cerebral dopamine neurotrophic factor##BC144619|CDNF|441549|cerebral dopamine neurotrophic factor##NM_001029954|CDNF|441549|cerebral dopamine neurotrophic factor##BC108738|HSPA14|51182|heat shock 70kDa protein 14##NM_016299|HSPA14|51182|heat shock 70kDa protein 14##AK225265|HSPA14|51182|heat shock 70kDa protein 14##AK225651|HSPA14|51182|heat shock 70kDa protein 14##AK302452|HSPA14|51182|heat shock 70kDa protein 14##AK000880|HSPA14|51182|heat shock 70kDa protein 14##BC065281|HSPA14|51182|heat shock 70kDa protein 14##BC038845|HSPA14|51182|heat shock 70kDa protein 14	0.995558	0.0	denovo_WM_7:12:0.359
chr1	17230375	17230555	reg1007120.p1	5.341	+	AK123337 TSC_hg19_v1_chr1_-_16971178	-259288	-	TSC_hg19_v1_chr1_-_16971175 AK090414	-259299	-	TSC_hg19_v1_chr1_-_16940046 AK123260 AY894575 NM_017940 BC066930 BC010124 BC082236 BC110431 AK055895 BC093404	-290569	-	TSC_hg19_v1_chr1_+_17248425 NM_014675	17969	+	TSC_hg19_v1_chr1_-_17307116 BC028033 AK222751 BC015039 NM_001135248 NM_002403	76684	-	AK301655 NM_001135247 NM_017459	77611	-	AK123337|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK090414|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK123260|NBPF1|55672|neuroblastoma breakpoint family, member 1##AY894575|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_017940|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC066930|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC010124|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC110431|NBPF1|55672|neuroblastoma breakpoint family, member 1##AK055895|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC093404|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_014675|CROCC|9696|ciliary rootlet coiled-coil, rootletin##BC028033|MFAP2|4237|microfibrillar-associated protein 2##AK222751|MFAP2|4237|microfibrillar-associated protein 2##BC015039|MFAP2|4237|microfibrillar-associated protein 2##NM_001135248|MFAP2|4237|microfibrillar-associated protein 2##NM_002403|MFAP2|4237|microfibrillar-associated protein 2##AK301655|MFAP2|4237|microfibrillar-associated protein 2##NM_001135247|MFAP2|4237|microfibrillar-associated protein 2##NM_017459|MFAP2|4237|microfibrillar-associated protein 2	0.999371	0.0	denovo_WM_7:62:0.964
chr19	50179728	50179907	reg1006268.p4	5.341	+	AB590882 TSC_hg19_v1_chr19_+_50169270 BC007724	-10630	+	TSC_hg19_v1_chr19_-_50169088 BC000660 AK314421 BC009395 AK057577 AK292027 NM_001197122 NM_001197123 NM_001197124 NM_001197125 NM_001197126 NM_001197127 NM_001197128 NM_001571	-10738	-	TSC_hg19_v1_chr19_-_50168868 Z56281 HM357932 HM357933 HM357934 HM357935 HM357936 HM357937	-10904	-	AK304660 NM_001207042 NM_001536 NM_198318 TSC_hg19_v1_chr19_+_50180491	632	+	AK295973 TSC_hg19_v1_chr19_+_50180493 AB590883 BC019268 AY775289 D66904 Y10805 Y10806 Y10807 BC109282 BC109283	704	+	BC032764 NM_001101340	12113	+	BC007724|BCL2L12|83596|BCL2-like 12 (proline rich)##BC000660|IRF3|3661|interferon regulatory factor 3##AK314421|IRF3|3661|interferon regulatory factor 3##BC009395|IRF3|3661|interferon regulatory factor 3##AK057577|IRF3|3661|interferon regulatory factor 3##AK292027|IRF3|3661|interferon regulatory factor 3##NM_001197122|IRF3|3661|interferon regulatory factor 3##NM_001197123|IRF3|3661|interferon regulatory factor 3##NM_001197124|IRF3|3661|interferon regulatory factor 3##NM_001197125|IRF3|3661|interferon regulatory factor 3##NM_001197126|IRF3|3661|interferon regulatory factor 3##NM_001197127|IRF3|3661|interferon regulatory factor 3##NM_001197128|IRF3|3661|interferon regulatory factor 3##NM_001571|IRF3|3661|interferon regulatory factor 3##Z56281|IRF3|3661|interferon regulatory factor 3##HM357932|IRF3|3661|interferon regulatory factor 3##HM357933|IRF3|3661|interferon regulatory factor 3##HM357934|IRF3|3661|interferon regulatory factor 3##HM357935|IRF3|3661|interferon regulatory factor 3##HM357936|IRF3|3661|interferon regulatory factor 3##HM357937|IRF3|3661|interferon regulatory factor 3##AK304660|PRMT1|3276|protein arginine methyltransferase 1##NM_001207042|PRMT1|3276|protein arginine methyltransferase 1##NM_001536|PRMT1|3276|protein arginine methyltransferase 1##NM_198318|PRMT1|3276|protein arginine methyltransferase 1##AK295973|PRMT1|3276|protein arginine methyltransferase 1##BC019268|PRMT1|3276|protein arginine methyltransferase 1##AY775289|PRMT1|3276|protein arginine methyltransferase 1##D66904|PRMT1|3276|protein arginine methyltransferase 1##Y10805|PRMT1|3276|protein arginine methyltransferase 1##Y10806|PRMT1|3276|protein arginine methyltransferase 1##Y10807|PRMT1|3276|protein arginine methyltransferase 1##BC109282|PRMT1|3276|protein arginine methyltransferase 1##BC109283|PRMT1|3276|protein arginine methyltransferase 1##BC032764|C19orf76|199800|chromosome 19 open reading frame 76##NM_001101340|C19orf76|199800|chromosome 19 open reading frame 76	0.0	0.0	
chr8	103135607	103135787	reg1010018.p2	5.341	+	NM_032041	-332259	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-332497	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-332514	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	826	-	NM_001040630	1437	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	115476	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	0.979572	0.0	denovo_WM_7:0:0.473	denovo_WM_7:0:0.473
chrX	20242976	20243120	reg1004030.p1	5.341	+	BT007064 EU831819 EU831896 TSC_hg19_v1_chrX_-_20159957 BC000793 BC110421 AK312320 BC067851 L18960 NM_001412	-83172	-	AK027409 TSC_hg19_v1_chrX_-_20135017 AK303019 AK316117 AK296319 BC136379 BC089400 NM_001168465 NM_001168466 NM_152780	-107984	-	AK294788 NM_001168467	-108296	-	AB102662 L07599 AB384785 BC096301 BC096302 BC096303 NM_004586 U08316 AK313932	41682	-	TSC_hg19_v1_chrX_-_20285001 AB208933	41909	-	TSC_hg19_v1_chrX_-_20285141 AK294373	42116	-	BT007064|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##EU831819|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##EU831896|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC000793|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC110421|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##AK312320|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##BC067851|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##L18960|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##NM_001412|EIF1AX|1964|eukaryotic translation initiation factor 1A, X-linked##AK027409|MAP7D2|256714|MAP7 domain containing 2##AK303019|MAP7D2|256714|MAP7 domain containing 2##AK316117|MAP7D2|256714|MAP7 domain containing 2##AK296319|MAP7D2|256714|MAP7 domain containing 2##BC136379|MAP7D2|256714|MAP7 domain containing 2##BC089400|MAP7D2|256714|MAP7 domain containing 2##NM_001168465|MAP7D2|256714|MAP7 domain containing 2##NM_001168466|MAP7D2|256714|MAP7 domain containing 2##NM_152780|MAP7D2|256714|MAP7 domain containing 2##AK294788|MAP7D2|256714|MAP7 domain containing 2##NM_001168467|MAP7D2|256714|MAP7 domain containing 2##AB102662|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##L07599|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096301|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096302|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096303|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_004586|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##U08316|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK313932|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3	0.058115	0.0	
chr10	74080361	74080541	reg1004490.p2	5.340	+	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	-46627	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-104340	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-104663	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	34227	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	34475	-	AK298347 AK296086 TSC_hg19_v1_chr10_-_74283734 NM_001195519	203268	-	NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK298347|MICU1|10367|mitochondrial calcium uptake 1##AK296086|MICU1|10367|mitochondrial calcium uptake 1##NM_001195519|MICU1|10367|mitochondrial calcium uptake 1	0.0	0.0	
chr14	77543388	77543455	reg1005707.p1	5.340	+	AK124327 TSC_hg19_v1_chr14_-_77542533	-888	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-48361	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-48737	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	21224	+	BC117676 TSC_hg19_v1_chr14_-_77608072	64594	-	AK294840 TSC_hg19_v1_chr14_-_77608135 AK095612 NM_174976	64714	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK294840|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK095612|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_174976|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.995245	0.320339	
chr20	13640056	13640219	reg1009582.p1	5.340	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	-20573	-	NM_080826 TSC_hg19_v1_chr20_+_13202422	-437714	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-650496	+	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	125404	-	TSC_hg19_v1_chr20_+_13765698 NM_001039375 NM_024120 AK289781 AK091060 AX746757 BC073158 CU687252 BC005984	125616	+	BC035741 AK302170 NM_025229	331121	-	BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_001039375|C20orf7|79133|chromosome 20 open reading frame 7##NM_024120|C20orf7|79133|chromosome 20 open reading frame 7##AK289781|C20orf7|79133|chromosome 20 open reading frame 7##AK091060|C20orf7|79133|chromosome 20 open reading frame 7##BC073158|C20orf7|79133|chromosome 20 open reading frame 7##BC005984|C20orf7|79133|chromosome 20 open reading frame 7##BC035741|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##AK302170|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##NM_025229|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)	0.944688	0.0	denovo_WM_7:-35:0.367	denovo_WM_7:-38:0.250
chr6	78258457	78258637	reg1010290.p2	5.340	+	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	-85398	-	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	-1476248	-	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-1799538	+	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	1318708	+	BC064611 TSC_hg19_v1_chr6_-_79675737 AK000712	1417205	-	TSC_hg19_v1_chr6_+_79787573 BC036479	1529013	+	BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC064611|PHIP|55023|pleckstrin homology domain interacting protein##AK000712|PHIP|55023|pleckstrin homology domain interacting protein##BC036479|PHIP|55023|pleckstrin homology domain interacting protein	0.0	0.0	
chr1	15068941	15069042	reg1008976.p2	5.339	+	TSC_hg19_v1_chr1_+_14925186 AB028949 AY505119 NM_015209 NM_201628	-143797	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	-993050	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	-993068	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	181728	+	AY505121 NM_001018001	187304	+	AY505122 NM_001017999	203423	+	AB028949|KAZN|23254|kazrin, periplakin interacting protein##AY505119|KAZN|23254|kazrin, periplakin interacting protein##NM_015209|KAZN|23254|kazrin, periplakin interacting protein##NM_201628|KAZN|23254|kazrin, periplakin interacting protein##AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein##AY505122|KAZN|23254|kazrin, periplakin interacting protein##NM_001017999|KAZN|23254|kazrin, periplakin interacting protein	0.0	0.0	
chr1	24136321	24136481	reg1008203.p1	5.339	+	TSC_hg19_v1_chr1_-_24127245 BC056880 BC001273 BC050685 AK096127 AK307354 AK057302 NM_001008216	-9159	-	L41668 TSC_hg19_v1_chr1_-_24127069 NM_000403	-9409	-	AK314397 TSC_hg19_v1_chr1_-_24126033 NM_001127621	-10356	-	TSC_hg19_v1_chr1_-_24151929 BC021145 BT009792 CR456884 CU679747 DQ892083 DQ895276 L07033 BC010570 AK309129 AK300733 AK313869	15486	-	TSC_hg19_v1_chr1_-_24151934 NM_000191 NM_001166059	15547	-	CU675950 TSC_hg19_v1_chr1_-_24194781 M29877 AB074175 AK092914 AK095443 AK095455 AK225468 AK301302 AK310143 AK314649 AX747804 BC017338 AK295535 NM_000147	58408	-	BC056880|GALE|2582|UDP-galactose-4-epimerase##BC001273|GALE|2582|UDP-galactose-4-epimerase##BC050685|GALE|2582|UDP-galactose-4-epimerase##AK096127|GALE|2582|UDP-galactose-4-epimerase##AK307354|GALE|2582|UDP-galactose-4-epimerase##AK057302|GALE|2582|UDP-galactose-4-epimerase##NM_001008216|GALE|2582|UDP-galactose-4-epimerase##L41668|GALE|2582|UDP-galactose-4-epimerase##NM_000403|GALE|2582|UDP-galactose-4-epimerase##AK314397|GALE|2582|UDP-galactose-4-epimerase##NM_001127621|GALE|2582|UDP-galactose-4-epimerase##BC021145|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BT009792|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##CR456884|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ892083|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ895276|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##L07033|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC010570|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK309129|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK300733|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK313869|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_000191|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_001166059|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##M29877|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AB074175|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK092914|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095443|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095455|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK225468|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK301302|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK310143|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK314649|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC017338|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK295535|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000147|FUCA1|2517|fucosidase, alpha-L- 1, tissue	0.0	0.521023	CTCF.p2:-18:0.521
chr14	23031229	23031370	reg1005794.p1	5.339	+	X58763 TSC_hg19_v1_chr14_+_22989364	-41950	+	AB463964 NM_001001912 AY726598	-897977	+	NM_001005466 AB529274 BC137371 BC137382	-928253	-	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	26787	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	26835	-	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	35890	+	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4	0.999164	0.0	denovo_WM_7:42:0.676	denovo_WM_7:44:0.216
chr14	35949775	35949884	reg1007913.p1	5.339	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	-75905	-	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	-188186	+	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	-188258	+	AF260323 NM_032594 BC130377 BC130379 TSC_hg19_v1_chr14_+_36003369 AB037912 AK096639	53480	+	AB511280 BC150596 TSC_hg19_v1_chr14_-_36278252	328318	-	TSC_hg19_v1_chr14_-_36278433 AY596970 AY596971 NM_014990 NM_194301	328566	-	BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AF260323|INSM2|84684|insulinoma-associated 2##NM_032594|INSM2|84684|insulinoma-associated 2##BC130377|INSM2|84684|insulinoma-associated 2##BC130379|INSM2|84684|insulinoma-associated 2##AB037912|INSM2|84684|insulinoma-associated 2##AK096639|INSM2|84684|insulinoma-associated 2##AB511280|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BC150596|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596970|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596971|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_014990|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_194301|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)	0.999365	0.0	denovo_WM_7:68:0.841
chr14	97875571	97875751	reg1000925.p2	5.339	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-611946	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-906877	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-906915	+	AK098639 NM_182560	1302288	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1861956	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1862229	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.8101	0.0	denovo_WM_7:106:0.796
chr2	178104661	178104841	reg1008737.p2	5.339	+	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	-27277	+	BC013438 TSC_hg19_v1_chr2_-_177502718	-602063	-	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-970512	+	AK311688 NM_001145412 NM_001145413	23820	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	24625	-	AK314816 NM_006164	25107	-	NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC013438|LOC375295|375295|uncharacterized LOC375295##NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AK314816|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_006164|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	0.993915	0.0	
chr3	16553832	16554012	reg1010248.p2	5.339	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-247214	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-247533	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-337728	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	1096	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	1302	-	BX648638 AK303026 NM_001190811	92348	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	0.0	0.0	
chr9	133806907	133807053	reg1008378.p1	5.339	+	AB109625 BC101127 BC101128 EU832764 GQ129307 NM_198180	-37756	-	TSC_hg19_v1_chr9_+_133710748 M14754 NM_005157	-96192	+	TSC_hg19_v1_chr9_+_133710665 M30833 X16416	-96313	+	BC112892 AY358311 AK292489 TSC_hg19_v1_chr9_-_133814106	7071	-	BC032953 NM_032843 TSC_hg19_v1_chr9_-_133814253	7264	-	AK300287 NM_001145106 TSC_hg19_v1_chr9_-_133814549	7511	-	AB109625|QRFP|347148|pyroglutamylated RFamide peptide##BC101127|QRFP|347148|pyroglutamylated RFamide peptide##BC101128|QRFP|347148|pyroglutamylated RFamide peptide##EU832764|QRFP|347148|pyroglutamylated RFamide peptide##GQ129307|QRFP|347148|pyroglutamylated RFamide peptide##NM_198180|QRFP|347148|pyroglutamylated RFamide peptide##M14754|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##NM_005157|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##M30833|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##X16416|ABL1|25|c-abl oncogene 1, non-receptor tyrosine kinase##BC112892|FIBCD1|84929|fibrinogen C domain containing 1##AY358311|FIBCD1|84929|fibrinogen C domain containing 1##AK292489|FIBCD1|84929|fibrinogen C domain containing 1##BC032953|FIBCD1|84929|fibrinogen C domain containing 1##NM_032843|FIBCD1|84929|fibrinogen C domain containing 1##AK300287|FIBCD1|84929|fibrinogen C domain containing 1##NM_001145106|FIBCD1|84929|fibrinogen C domain containing 1	1.585692	0.0	denovo_WM_7:-58:0.271	denovo_WM_7:-61:0.224	denovo_WM_7:-76:0.200	denovo_WM_7:-77:0.211
chr11	68987530	68987698	reg1007463.p1	5.338	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-130088	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-171188	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-171264	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	74008	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	468242	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	468296	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	0.999155	0.0	
chr13	50810993	50811115	reg1008695.p1	5.338	+	AJ412041 AJ412042 AJ412043 TSC_hg19_v1_chr13_+_50760088	-51001	+	TSC_hg19_v1_chr13_-_50699781 AF380424	-111239	-	AJ412023 AJ412024 AJ412025 AJ412026 AJ412038 AJ412039 AJ412054 AJ412055 AJ412056 AJ412057 AJ412058 AJ412059 AJ412060 AJ412061 AJ412062 Y15227 TSC_hg19_v1_chr13_+_50656364 BC004131 AK312167 BC020692 AK095311	-154709	+	AY357595 BC104892 BC112009 NM_198989 AK303567 AK126830	606898	-	NM_001142279 NM_024570 TSC_hg19_v1_chr13_+_51483898	672802	+	TSC_hg19_v1_chr13_+_51483905 AY764036	672850	+	AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AJ412023|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412024|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412061|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412062|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##Y15227|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC020692|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AK095311|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AY357595|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC104892|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC112009|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_198989|DLEU7|220107|deleted in lymphocytic leukemia, 7##AK126830|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_001142279|RNASEH2B|79621|ribonuclease H2, subunit B##NM_024570|RNASEH2B|79621|ribonuclease H2, subunit B##AY764036|RNASEH2B|79621|ribonuclease H2, subunit B	0.0	0.0	
chr13	77600325	77600505	reg1000079.p3	5.338	+	TSC_hg19_v1_chr13_+_77566215 NM_006493 AB528107 AK075109 AK304001	-34246	+	TSC_hg19_v1_chr13_-_77460541 AF359381 AK128363 AK311268 AK311543 NM_138444	-139808	-	BC013764 TSC_hg19_v1_chr13_-_77460431	-140015	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	867	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	916	-	NM_015057 TSC_hg19_v1_chr13_-_77901230	300788	-	NM_006493|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK075109|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AK304001|CLN5|1203|ceroid-lipofuscinosis, neuronal 5##AF359381|KCTD12|115207|potassium channel tetramerisation domain containing 12##AK128363|KCTD12|115207|potassium channel tetramerisation domain containing 12##NM_138444|KCTD12|115207|potassium channel tetramerisation domain containing 12##BC013764|KCTD12|115207|potassium channel tetramerisation domain containing 12##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_015057|MYCBP2|23077|MYC binding protein 2	0.0	0.0	
chr3	121722834	121722937	reg1002415.p2	5.338	+	NM_001145998 NM_021082 AK289820 AK296895 AK302002 AK304189 BC020743 BC044572 BC038445 S78203	-109653	+	AF217516 NM_018456 TSC_hg19_v1_chr3_+_121554083 BC014589 AY049020 BC014209 AF517829 AK301560 AB528527 CU676923 DQ892648 DQ895887	-168805	+	TSC_hg19_v1_chr3_-_121553908 AB062481 AY714228 NM_001023570 NM_001023571	-168958	-	AY672837 AY672839 BC044240 AY134857 TSC_hg19_v1_chr3_-_121741095 AK129974 NM_001199799 NM_001199800 NM_175924	18162	-	NM_001206924 NM_001206925 NM_175862 AK294663 AK301237 AK316203 BC040261 L25259 AK291497 AK313103	51369	+	NM_006889 NM_176892 U04343	73837	+	NM_001145998|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##NM_021082|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK289820|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK296895|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK302002|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AK304189|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC020743|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC044572|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##BC038445|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##S78203|SLC15A2|6565|solute carrier family 15 (H+/peptide transporter), member 2##AF217516|EAF2|55840|ELL associated factor 2##NM_018456|EAF2|55840|ELL associated factor 2##BC014589|EAF2|55840|ELL associated factor 2##AY049020|EAF2|55840|ELL associated factor 2##BC014209|EAF2|55840|ELL associated factor 2##AF517829|EAF2|55840|ELL associated factor 2##AK301560|EAF2|55840|ELL associated factor 2##DQ892648|EAF2|55840|ELL associated factor 2##DQ895887|EAF2|55840|ELL associated factor 2##AB062481|IQCB1|9657|IQ motif containing B1##AY714228|IQCB1|9657|IQ motif containing B1##NM_001023570|IQCB1|9657|IQ motif containing B1##NM_001023571|IQCB1|9657|IQ motif containing B1##AY672837|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY672839|ILDR1|286676|immunoglobulin-like domain containing receptor 1##BC044240|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY134857|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AK129974|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199799|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199800|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_175924|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001206924|CD86|942|CD86 molecule##NM_001206925|CD86|942|CD86 molecule##NM_175862|CD86|942|CD86 molecule##AK294663|CD86|942|CD86 molecule##AK301237|CD86|942|CD86 molecule##AK316203|CD86|942|CD86 molecule##BC040261|CD86|942|CD86 molecule##L25259|CD86|942|CD86 molecule##AK291497|CD86|942|CD86 molecule##AK313103|CD86|942|CD86 molecule##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule	0.998549	0.0	denovo_WM_7:-4:0.881
chr3	38206304	38206434	reg1010058.p1	5.338	+	NM_001172566 NM_001172567 NM_001172568 NM_001172569 NM_002468 TSC_hg19_v1_chr3_+_38180156 AK296716 U84408 BX537602 AK298650 AK300448 AK296570 AK298666 AB463903 AK300051 BC013589 AL832906 AB446470 AK304676 BT007376	-26285	+	TSC_hg19_v1_chr3_-_38178584 AK316551 AK301056 BC039837 BC000635 NM_001130410 NM_001607	-27713	-	TSC_hg19_v1_chr3_-_38178570 BC025780	-27797	-	TSC_hg19_v1_chr3_+_38206993 AB017642 NM_005109 BC008726	672	+	TSC_hg19_v1_chr3_+_38207137 AK309634	776	+	TSC_hg19_v1_chr3_+_38207257 AB029024 AB384561 CU679061 DQ893255 DQ896584	937	+	NM_001172566|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172567|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172568|MYD88|4615|myeloid differentiation primary response gene (88)##NM_001172569|MYD88|4615|myeloid differentiation primary response gene (88)##NM_002468|MYD88|4615|myeloid differentiation primary response gene (88)##AK296716|MYD88|4615|myeloid differentiation primary response gene (88)##U84408|MYD88|4615|myeloid differentiation primary response gene (88)##BX537602|MYD88|4615|myeloid differentiation primary response gene (88)##AK298650|MYD88|4615|myeloid differentiation primary response gene (88)##AK300448|MYD88|4615|myeloid differentiation primary response gene (88)##AK296570|MYD88|4615|myeloid differentiation primary response gene (88)##AK298666|MYD88|4615|myeloid differentiation primary response gene (88)##AK300051|MYD88|4615|myeloid differentiation primary response gene (88)##BC013589|MYD88|4615|myeloid differentiation primary response gene (88)##AL832906|MYD88|4615|myeloid differentiation primary response gene (88)##AB446470|MYD88|4615|myeloid differentiation primary response gene (88)##AK304676|MYD88|4615|myeloid differentiation primary response gene (88)##BT007376|MYD88|4615|myeloid differentiation primary response gene (88)##AK316551|ACAA1|30|acetyl-CoA acyltransferase 1##AK301056|ACAA1|30|acetyl-CoA acyltransferase 1##BC039837|ACAA1|30|acetyl-CoA acyltransferase 1##BC000635|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001130410|ACAA1|30|acetyl-CoA acyltransferase 1##NM_001607|ACAA1|30|acetyl-CoA acyltransferase 1##BC025780|ACAA1|30|acetyl-CoA acyltransferase 1##AB017642|OXSR1|9943|oxidative-stress responsive 1##NM_005109|OXSR1|9943|oxidative-stress responsive 1##BC008726|OXSR1|9943|oxidative-stress responsive 1##AK309634|OXSR1|9943|oxidative-stress responsive 1##AB029024|OXSR1|9943|oxidative-stress responsive 1##DQ893255|OXSR1|9943|oxidative-stress responsive 1##DQ896584|OXSR1|9943|oxidative-stress responsive 1	0.0	0.0	
chr9	87670969	87671057	reg1007615.p1	5.338	+	U12140 TSC_hg19_v1_chr9_+_87285349	-385681	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-386261	+	TSC_hg19_v1_chr9_+_87284681 AF410899 AF410900 AF410901	-386317	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	685858	-	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	885061	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	885165	+	U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410899|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410900|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410901|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	0.0	0.0	
chr12	110895364	110895452	reg1000648.p4	5.337	+	TSC_hg19_v1_chr12_-_110888163 AK311789	-7239	-	TSC_hg19_v1_chr12_-_110888152 NM_005719	-7254	-	TSC_hg19_v1_chr12_-_110888134 AK297309	-7266	-	AM992619 AM992620 AY364262 CU678955 CU689082 AB528074 AM393009 AM393821 TSC_hg19_v1_chr12_-_110906038 AF117229	10622	-	TSC_hg19_v1_chr12_-_110906063 AK223209 AK314946 BC008416 BC031024 AY359078 BX537973 NM_001164373 NM_016301	10664	-	TSC_hg19_v1_chr12_+_110906228 AK296280 AK297684 NM_013300 AK225731 U79274 BC020967	10901	+	AK311789|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##NM_005719|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AK297309|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AM992619|GPN3|51184|GPN-loop GTPase 3##AM992620|GPN3|51184|GPN-loop GTPase 3##AY364262|GPN3|51184|GPN-loop GTPase 3##AM393009|GPN3|51184|GPN-loop GTPase 3##AM393821|GPN3|51184|GPN-loop GTPase 3##AF117229|GPN3|51184|GPN-loop GTPase 3##AK223209|GPN3|51184|GPN-loop GTPase 3##AK314946|GPN3|51184|GPN-loop GTPase 3##BC008416|GPN3|51184|GPN-loop GTPase 3##BC031024|GPN3|51184|GPN-loop GTPase 3##AY359078|GPN3|51184|GPN-loop GTPase 3##BX537973|GPN3|51184|GPN-loop GTPase 3##NM_001164373|GPN3|51184|GPN-loop GTPase 3##NM_016301|GPN3|51184|GPN-loop GTPase 3##AK296280|C12orf24|29902|chromosome 12 open reading frame 24##AK297684|C12orf24|29902|chromosome 12 open reading frame 24##NM_013300|C12orf24|29902|chromosome 12 open reading frame 24##AK225731|C12orf24|29902|chromosome 12 open reading frame 24##U79274|C12orf24|29902|chromosome 12 open reading frame 24##BC020967|C12orf24|29902|chromosome 12 open reading frame 24	0.0	0.0	
chr16	66624268	66624435	reg1006344.p3	5.336	+	AY862139 NM_001199317 NM_144673 AF479260 BC025354 AK098598 CU692974 DQ892836 EU176735	-10922	+	NM_181269 NM_181270 NM_181271 NM_181272 NM_181283 NM_181296 AY174118 AY174119 AY174120 AY174121 AY174122 AY174123 AY174124 AY174125 AY174126 AY174127 AY174128 AY174129 AY174130 AY174131 AY174132 AY174133 TSC_hg19_v1_chr16_+_66600302 BC057852 NM_052999 NM_181268 BC018586	-23999	+	TSC_hg19_v1_chr16_+_66586551 AB590157 DQ893388 DQ896708	-37783	+	AK056324 TSC_hg19_v1_chr16_+_66638053	13645	+	TSC_hg19_v1_chr16_+_66638261 NM_144601 AF479813	13896	+	TSC_hg19_v1_chr16_+_66638606 BC047701 NM_181553 BC036042 BC040227	14223	+	AY862139|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_001199317|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_144673|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##AF479260|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##BC025354|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##AK098598|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##DQ892836|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##EU176735|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_181269|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181270|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181271|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181272|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181283|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181296|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174118|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174119|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174120|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174121|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174122|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174123|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174124|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174125|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174126|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174127|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174128|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174129|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174130|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174131|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174132|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174133|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##BC057852|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_052999|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181268|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##BC018586|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##DQ893388|CKLF|51192|chemokine-like factor##DQ896708|CKLF|51192|chemokine-like factor##AK056324|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##NM_144601|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##AF479813|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC047701|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##NM_181553|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC036042|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC040227|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3	0.0	0.042705	
chr8	57014337	57014433	reg1006448.p3	5.336	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	-27299	-	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-221865	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-221990	+	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	12155	-	TSC_hg19_v1_chr8_-_57123833 U65002	109450	-	AK296933 AK313663 NM_001114634 NM_001114635 NM_002655 TSC_hg19_v1_chr8_-_57123860	109476	-	BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1##AK296933|PLAG1|5324|pleiomorphic adenoma gene 1##AK313663|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114634|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114635|PLAG1|5324|pleiomorphic adenoma gene 1##NM_002655|PLAG1|5324|pleiomorphic adenoma gene 1	0.997182	0.0	denovo_WM_7:7:0.520	denovo_WM_7:8:0.447
chr9	126964506	126964686	reg1006527.p1	5.336	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-190525	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-190713	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-272285	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	55414	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	55649	+	TSC_hg19_v1_chr9_+_127020255 AB026289	55668	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.368648	0.0	denovo_WM_7:-103:0.310
chr2	241410572	241410697	reg1009332.p2	5.335	+	TSC_hg19_v1_chr2_+_241375269 AK223516 BC045712	-35369	+	TSC_hg19_v1_chr2_+_241375207 BC027997	-35423	+	TSC_hg19_v1_chr2_+_241375079 BC051279 NM_002081 X54232	-35554	+	AK125881 TSC_hg19_v1_chr2_-_241495084	84396	-	AB034636 BC073146 BC036111 TSC_hg19_v1_chr2_-_241497400	86749	-	AK000506 AK225534 NM_016552 NM_017844 TSC_hg19_v1_chr2_-_241497404	86770	-	AK223516|GPC1|2817|glypican 1##BC045712|GPC1|2817|glypican 1##BC027997|GPC1|2817|glypican 1##BC051279|GPC1|2817|glypican 1##NM_002081|GPC1|2817|glypican 1##X54232|GPC1|2817|glypican 1##AK125881|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##AB034636|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##BC073146|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##BC036111|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##AK000506|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##AK225534|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##NM_016552|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##NM_017844|ANKMY1|51281|ankyrin repeat and MYND domain containing 1	0.998456	0.0	denovo_WM_7:51:0.310	denovo_WM_7:52:0.310	denovo_WM_7:53:0.310
chr3	101441365	101441521	reg1007548.p1	5.335	+	CR456729 TSC_hg19_v1_chr3_-_101405541 BC070193 BC000690 M94314 AK311992 NM_000986	-35961	-	TSC_hg19_v1_chr3_-_101395977 BC111700 U69274 BC028062 AK312859 NM_014415	-45623	-	TSC_hg19_v1_chr3_+_101395318 BC016930	-46132	+	AK309806 AL833269 BC041085 NM_024548 AK294784	2024	+	NM_145037 TSC_hg19_v1_chr3_+_101498054	56605	+	TSC_hg19_v1_chr3_+_101498080 BC009431	56645	+	CR456729|RPL24|6152|ribosomal protein L24##BC070193|RPL24|6152|ribosomal protein L24##BC000690|RPL24|6152|ribosomal protein L24##M94314|RPL24|6152|ribosomal protein L24##AK311992|RPL24|6152|ribosomal protein L24##NM_000986|RPL24|6152|ribosomal protein L24##BC111700|ZBTB11|27107|zinc finger and BTB domain containing 11##U69274|ZBTB11|27107|zinc finger and BTB domain containing 11##BC028062|ZBTB11|27107|zinc finger and BTB domain containing 11##AK312859|ZBTB11|27107|zinc finger and BTB domain containing 11##NM_014415|ZBTB11|27107|zinc finger and BTB domain containing 11##BC016930|LOC100009676|100009676|uncharacterized LOC100009676##AK309806|CEP97|79598|centrosomal protein 97kDa##AL833269|CEP97|79598|centrosomal protein 97kDa##BC041085|CEP97|79598|centrosomal protein 97kDa##NM_024548|CEP97|79598|centrosomal protein 97kDa##AK294784|CEP97|79598|centrosomal protein 97kDa##NM_145037|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C	0.0	0.0	
chr4	39869367	39869488	reg1010505.p2	5.335	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-169623	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-228871	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-339801	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	109911	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	110166	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	189105	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.0	0.0	
chr5	138606548	138606679	reg1007805.p1	5.335	+	TSC_hg19_v1_chr5_-_138534058 AJ299442 AK074624 NM_001037633 NM_022464	-72567	-	TSC_hg19_v1_chr5_-_138533998 AY358950 BC011568	-72605	-	AF547994 TSC_hg19_v1_chr5_-_138533996 AK075177	-72624	-	AK307872 NM_001194954 NM_199189 TSC_hg19_v1_chr5_+_138609537	2875	+	TSC_hg19_v1_chr5_+_138609789 BC036498 CR749625 AK293952 AJ224166 AJ224167 AJ224168 AJ224169 AJ224170	3191	+	TSC_hg19_v1_chr5_+_138629336 NM_018834	22726	+	AJ299442|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK074624|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_001037633|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_022464|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AY358950|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##BC011568|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AF547994|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK075177|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK307872|MATR3|9782|matrin 3##NM_001194954|MATR3|9782|matrin 3##NM_199189|MATR3|9782|matrin 3##BC036498|MATR3|9782|matrin 3##CR749625|MATR3|9782|matrin 3##AK293952|MATR3|9782|matrin 3##AJ224166|MATR3|9782|matrin 3##AJ224167|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224168|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224169|MATR3|9782|matrin 3##AJ224170|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##NM_018834|MATR3|9782|matrin 3	0.995245	0.0	
chr8	101398599	101398752	reg1006100.p2	5.335	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-76390	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-76494	-	AB271913 AB271914 AB029316 NM_015435	-83204	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	173265	-	AK093906 AX748361 NM_152628	263217	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	335131	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	0.981315	0.0	denovo_WM_7:-27:0.210	denovo_WM_7:-28:0.661
chr10	120101853	120102025	reg1009145.p1	5.334	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	-115	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	-295509	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	-295895	-	AK313269 AK290461 NM_004248	253219	-	CU691560 TSC_hg19_v1_chr10_-_120514298	412348	-	TSC_hg19_v1_chr10_-_120514483 AJ544771 AK097728	412572	-	AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AK313269|PRLHR|2834|prolactin releasing hormone receptor##AK290461|PRLHR|2834|prolactin releasing hormone receptor##NM_004248|PRLHR|2834|prolactin releasing hormone receptor##AJ544771|C10orf46|143384|chromosome 10 open reading frame 46##AK097728|C10orf46|143384|chromosome 10 open reading frame 46	0.942943	0.0	denovo_WM_7:23:0.711
chr11	66882508	66882606	reg1002270.p2	5.334	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	-58217	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	-58271	+	NM_177963 AK289672 AK289727 BC037406	-91705	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	4182	+	AK096194 TSC_hg19_v1_chr11_+_67007484	124927	+	TSC_hg19_v1_chr11_+_67007558 AB490246 AK299725	125026	+	BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##NM_014578|RHOD|29984|ras homolog gene family, member D##NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A##AK096194|LOC100131150|100131150|uncharacterized LOC100131150##AB490246|KDM2A|22992|lysine (K)-specific demethylase 2A##AK299725|KDM2A|22992|lysine (K)-specific demethylase 2A	2.225616	0.0	denovo_WM_7:-48:0.291	denovo_WM_7:-63:0.279	denovo_WM_7:69:0.640
chr1	192583386	192583547	reg1009362.p1	5.334	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	-38558	+	AY643711 NM_001039152	-297345	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-455863	+	NM_002927 NM_144766 AF030107 BC016667	21818	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	194718	+	BT006790 CU692976 AB528990 AF151828 AK225794 BC015521 TSC_hg19_v1_chr1_-_193028470 AK314445 AK316064 AK024751	444971	-	NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT006790|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF151828|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK225794|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC015521|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK314445|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK316064|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK024751|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5	0.997767	0.0	denovo_WM_7:10:0.880
chr3	33026569	33026696	reg1007077.p1	5.334	+	BC071751 NM_005508 AK292674	-33532	+	DQ232881 NM_001039111	-167123	+	TSC_hg19_v1_chr3_+_32726700 AK023227 AK022952 NM_015442 AK309670 BC006382 BC002931 BC002928 AK297085 AK298693 CU678296 CU678298 DQ892895 DQ896143 EU831494 EU831581	-299827	+	TSC_hg19_v1_chr3_-_33138279 AK300021 AK126979 AK128242 NM_001039770 NM_001136238	111638	-	NM_001079811 TSC_hg19_v1_chr3_-_33138315	111701	-	BT007147 CU675671 DQ890689 DQ893871 TSC_hg19_v1_chr3_-_33138590	111951	-	BC071751|CCR4|1233|chemokine (C-C motif) receptor 4##NM_005508|CCR4|1233|chemokine (C-C motif) receptor 4##AK292674|CCR4|1233|chemokine (C-C motif) receptor 4##DQ232881|TRIM71|131405|tripartite motif containing 71##NM_001039111|TRIM71|131405|tripartite motif containing 71##AK023227|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK022952|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##NM_015442|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK309670|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC006382|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002931|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002928|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK297085|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK298693|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ892895|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ896143|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831494|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831581|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK300021|GLB1|2720|galactosidase, beta 1##AK126979|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##AK128242|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##NM_001039770|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##NM_001136238|TMPPE|643853|transmembrane protein with metallophosphoesterase domain##NM_001079811|GLB1|2720|galactosidase, beta 1##BT007147|GLB1|2720|galactosidase, beta 1##DQ890689|GLB1|2720|galactosidase, beta 1##DQ893871|GLB1|2720|galactosidase, beta 1	0.999537	0.0	
chr5	126066893	126067031	reg1005192.p2	5.334	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-99547	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-130330	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-136106	-	NM_005573 BC052951	45353	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	45869	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	45920	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.0	0.0	
chr7	128858845	128858970	reg1004730.p2	5.334	+	BC009989 NM_005631	-30195	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-163702	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-163759	-	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	5922	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	149079	+	TSC_hg19_v1_chr7_+_129008062 AK025372	149181	+	BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2##AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2	0.999634	0.0	
chrX	16974323	16974439	reg1011752.p1	5.333	+	TSC_hg19_v1_chrX_+_16964847 AF010233 NM_001080975 NM_004726 AF511533 AF512951	-9449	+	TSC_hg19_v1_chrX_-_16888462 NM_002893	-85884	-	TSC_hg19_v1_chrX_-_16888456 X72841	-85930	-	TSC_hg19_v1_chrX_+_17393357 AK302437	418973	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	419161	+	TSC_hg19_v1_chrX_+_17393806 BC136415 BC171763	419430	+	AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2##AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2##AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_002893|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7##AK302437|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC136415|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC171763|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)	2.993878	0.0	denovo_WM_7:34:0.284	denovo_WM_7:35:0.237	denovo_WM_7:-52:0.721	denovo_WM_7:53:0.237	denovo_WM_7:54:0.285
chr11	82671048	82671226	reg1007313.p1	5.332	+	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	-58363	+	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	-59620	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	-226239	-	AK312323 TSC_hg19_v1_chr11_-_82782872	111736	-	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	111760	-	BC031316 TSC_hg19_v1_chr11_+_82783118	111981	+	NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AK312323|RAB30|27314|RAB30, member RAS oncogene family##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##BC031316|LOC100506233|100506233|uncharacterized LOC100506233	0.996378	0.0	denovo_WM_7:-41:0.996
chr1	244997588	244997752	reg1009685.p2	5.332	+	TSC_hg19_v1_chr1_+_244816472 AF151904 AF229834	-181149	+	TSC_hg19_v1_chr1_+_244816428 BC004485 BC020640	-181262	+	AK314664 TSC_hg19_v1_chr1_+_244816381	-181289	+	TSC_hg19_v1_chr1_+_244998628 AK125259 NM_198076	1039	+	TSC_hg19_v1_chr1_+_244998959 AK130498 BC062419 BC018519	1270	+	TSC_hg19_v1_chr1_+_244998992 AK000866 BC095486 AK300760 BC064399 AF086182	1316	+	AF151904|PPPDE1|51029|PPPDE peptidase domain containing 1##AF229834|PPPDE1|51029|PPPDE peptidase domain containing 1##BC004485|PPPDE1|51029|PPPDE peptidase domain containing 1##BC020640|PPPDE1|51029|PPPDE peptidase domain containing 1##AK314664|PPPDE1|51029|PPPDE peptidase domain containing 1##AK125259|FAM36A|116228|family with sequence similarity 36, member A##NM_198076|FAM36A|116228|family with sequence similarity 36, member A##AK130498|FAM36A|116228|family with sequence similarity 36, member A##BC062419|FAM36A|116228|family with sequence similarity 36, member A##BC018519|FAM36A|116228|family with sequence similarity 36, member A##AK000866|FAM36A|116228|family with sequence similarity 36, member A##BC095486|FAM36A|116228|family with sequence similarity 36, member A##AK300760|FAM36A|116228|family with sequence similarity 36, member A##BC064399|FAM36A|116228|family with sequence similarity 36, member A##AF086182|FAM36A|116228|family with sequence similarity 36, member A	0.87482	0.0	denovo_WM_7:-58:0.732
chr12	47188754	47188858	reg1007731.p1	5.332	+	TSC_hg19_v1_chr12_-_46766619 NM_018976	-422203	-	TSC_hg19_v1_chr12_-_46766555 AK291644 BC040342 AK001700 AJ344099 AF298897	-422517	-	NM_001077484 NM_030674	-525599	-	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	30950	-	TSC_hg19_v1_chr12_+_47473404 BC072670	284591	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	284777	-	NM_018976|SLC38A2|54407|solute carrier family 38, member 2##AK291644|SLC38A2|54407|solute carrier family 38, member 2##BC040342|SLC38A2|54407|solute carrier family 38, member 2##AK001700|SLC38A2|54407|solute carrier family 38, member 2##AJ344099|SLC38A2|54407|solute carrier family 38, member 2##AF298897|SLC38A2|54407|solute carrier family 38, member 2##NM_001077484|SLC38A1|81539|solute carrier family 38, member 1##NM_030674|SLC38A1|81539|solute carrier family 38, member 1##AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2	0.992459	0.0	denovo_WM_7:-29:0.846
chr3	117198152	117198275	reg1008881.p1	5.332	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-1033840	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-1033882	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-1855794	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	1555320	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	1555470	-	AK097667 NM_152538 AK292387	1666684	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	0.045042	0.0	
chr3	191841258	191841438	reg1009535.p2	5.332	+	AY858112 NM_001083308	-662397	+	AK090630 AX746546 NM_198152	-793024	-	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	-794182	+	AK125307 NM_021032 TSC_hg19_v1_chr3_-_192126847	285495	-	AK312513 TSC_hg19_v1_chr3_-_192445344 BC022524 NM_004113	604017	-	BC013123 TSC_hg19_v1_chr3_-_192635639 AK290447 BX648517	794288	-	AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK125307|FGF12|2257|fibroblast growth factor 12##NM_021032|FGF12|2257|fibroblast growth factor 12##AK312513|FGF12|2257|fibroblast growth factor 12##BC022524|FGF12|2257|fibroblast growth factor 12##NM_004113|FGF12|2257|fibroblast growth factor 12##BC013123|MB21D2|151963|Mab-21 domain containing 2##AK290447|MB21D2|151963|Mab-21 domain containing 2##BX648517|MB21D2|151963|Mab-21 domain containing 2	0.01056	0.0	
chr1	27984632	27984812	reg1010011.p1	5.331	+	TSC_hg19_v1_chr1_-_27961656 BC064382 AK130188 NM_005248	-23036	-	M27454 AK301078 BC002836 AK304846 NM_001042729	-31647	-	AK125143 TSC_hg19_v1_chr1_-_27952648 NM_001042747	-32052	-	TSC_hg19_v1_chr1_-_27998690 X02492 BC011601 BC015603	13955	-	TSC_hg19_v1_chr1_-_27998704 AK024814 AK314488	13987	-	TSC_hg19_v1_chr1_-_27998734 NM_002038 NM_022872 NM_022873	14017	-	BC064382|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##AK130188|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_005248|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##M27454|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##AK301078|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042729|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##AK125143|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042747|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##X02492|IFI6|2537|interferon, alpha-inducible protein 6##BC011601|IFI6|2537|interferon, alpha-inducible protein 6##BC015603|IFI6|2537|interferon, alpha-inducible protein 6##AK024814|IFI6|2537|interferon, alpha-inducible protein 6##AK314488|IFI6|2537|interferon, alpha-inducible protein 6##NM_002038|IFI6|2537|interferon, alpha-inducible protein 6##NM_022872|IFI6|2537|interferon, alpha-inducible protein 6##NM_022873|IFI6|2537|interferon, alpha-inducible protein 6	1.995919	0.0	denovo_WM_7:36:0.395	denovo_WM_7:37:0.297	denovo_WM_7:53:0.298	denovo_WM_7:54:0.397
chr3	150393505	150393589	reg1006973.p2	5.331	+	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	-72392	+	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	-72571	-	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-128961	+	AK093375 AX748085 BC036239 BC029577 NM_152394	28182	-	TSC_hg19_v1_chr3_-_150480902 AK223565	87352	-	TSC_hg19_v1_chr3_-_150480936 BC013082	87383	-	NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A##AK223565|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##BC013082|SIAH2|6478|seven in absentia homolog 2 (Drosophila)	1.996152	0.0	denovo_WM_7:-47:0.901	denovo_WM_7:105:0.952
chr7	150558951	150559048	reg1010734.p1	5.331	+	TSC_hg19_v1_chr7_+_150549604 U11863 AK092514 AK296638 AK307278 AK314806 BC014093 M55602	-9387	+	TSC_hg19_v1_chr7_+_150549567 U11862 NM_001091	-9448	+	BC004358 BC014586 NM_014020 AK097304	-60594	-	TSC_hg19_v1_chr7_-_150652893 BC127672 BC127673 BC080563 NM_001204798 NM_172057 DQ120125	93928	-	TSC_hg19_v1_chr7_-_150675385 DQ525913 NM_000238 NM_172056	116370	-	NM_000603 BC063294 AK300390	129168	+	U11863|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##AK092514|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##AK296638|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##AK314806|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##BC014093|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##M55602|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##U11862|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##NM_001091|ABP1|26|amiloride binding protein 1 (amine oxidase (copper-containing))##BC004358|TMEM176B|28959|transmembrane protein 176B##BC014586|TMEM176B|28959|transmembrane protein 176B##NM_014020|TMEM176B|28959|transmembrane protein 176B##AK097304|TMEM176B|28959|transmembrane protein 176B##BC127673|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##NM_001204798|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##NM_172057|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##DQ120125|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##DQ525913|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##NM_000238|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##NM_172056|KCNH2|3757|potassium voltage-gated channel, subfamily H (eag-related), member 2##NM_000603|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##BC063294|NOS3|4846|nitric oxide synthase 3 (endothelial cell)##AK300390|NOS3|4846|nitric oxide synthase 3 (endothelial cell)	0.995035	0.0	
chr10	17269458	17269616	reg1008890.p1	5.330	+	NM_004412	-25468	-	TSC_hg19_v1_chr10_-_17243660 CR450316 AF045888 AK291417 AF012128 BC047733 AK303428 BX537961 AJ223333 AK299027	-25804	-	AF034611 NM_001081 TSC_hg19_v1_chr10_-_17171878	-97704	-	NM_003380	720	+	BC066956 TSC_hg19_v1_chr10_+_17270601	999	+	AK056766 AK091813 AK097336 AK098444 AK222507 AK222602 TSC_hg19_v1_chr10_+_17271276	1739	+	NM_004412|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##CR450316|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF045888|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK291417|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF012128|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BC047733|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK303428|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BX537961|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AJ223333|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK299027|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF034611|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_001081|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_003380|VIM|7431|vimentin##BC066956|VIM|7431|vimentin##AK056766|VIM|7431|vimentin##AK091813|VIM|7431|vimentin##AK097336|VIM|7431|vimentin##AK098444|VIM|7431|vimentin##AK222507|VIM|7431|vimentin##AK222602|VIM|7431|vimentin	0.025524	0.0	
chr4	89744898	89745056	reg1008880.p2	5.330	+	AB385402 AB020721 TSC_hg19_v1_chr4_-_89744384 AK027138 BC033006 BC086875 BC058029 AK296932 NM_001015045 AK091787 AX747185	-696	-	BC104883 TSC_hg19_v1_chr4_-_89618996 AL834329 AK054689 BC022544 NM_153757	-126002	-	AK296379 TSC_hg19_v1_chr4_+_89513611 AK289990 BC038960 D25215 NM_014606	-231356	+	CU687656 BC063126 BC041029 BC053569 BX647410 NM_014883	233242	-	AK091881 AX747234 TSC_hg19_v1_chr4_-_90032571	287582	-	AK027653 NM_145715	288990	+	AB020721|FAM13A|10144|family with sequence similarity 13, member A##AK027138|FAM13A|10144|family with sequence similarity 13, member A##BC033006|FAM13A|10144|family with sequence similarity 13, member A##BC086875|FAM13A|10144|family with sequence similarity 13, member A##BC058029|FAM13A|10144|family with sequence similarity 13, member A##AK296932|FAM13A|10144|family with sequence similarity 13, member A##NM_001015045|FAM13A|10144|family with sequence similarity 13, member A##AK091787|FAM13A|10144|family with sequence similarity 13, member A##BC104883|NAP1L5|266812|nucleosome assembly protein 1-like 5##AL834329|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK054689|NAP1L5|266812|nucleosome assembly protein 1-like 5##BC022544|NAP1L5|266812|nucleosome assembly protein 1-like 5##NM_153757|NAP1L5|266812|nucleosome assembly protein 1-like 5##AK296379|HERC3|8916|hect domain and RLD 3##AK289990|HERC3|8916|hect domain and RLD 3##BC038960|HERC3|8916|hect domain and RLD 3##D25215|HERC3|8916|hect domain and RLD 3##NM_014606|HERC3|8916|hect domain and RLD 3##BC063126|FAM13A|10144|family with sequence similarity 13, member A##BC041029|FAM13A|10144|family with sequence similarity 13, member A##BC053569|FAM13A|10144|family with sequence similarity 13, member A##BX647410|FAM13A|10144|family with sequence similarity 13, member A##NM_014883|FAM13A|10144|family with sequence similarity 13, member A##AK091881|FAM13A|10144|family with sequence similarity 13, member A##AK027653|TIGD2|166815|tigger transposable element derived 2##NM_145715|TIGD2|166815|tigger transposable element derived 2	0.0	0.0	
chr7	117721112	117721226	reg1008933.p1	5.330	+	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	-207626	-	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	-207688	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	-601131	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	103002	+	NM_019644 AK302407	143565	+	AK307139 AB028967 NM_012281	2192535	+	BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2	0.0	0.0	
chr10	122702504	122702641	reg1009194.p1	5.329	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	-91677	+	NM_018117 TSC_hg19_v1_chr10_+_122610771	-91844	+	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	-485933	+	AB084153 EF057068 EU826598 EU826599 EU826600 EU826601 AB587574 M55614 Z71929 X56191 NM_001144913 NM_001144914	650833	-	AK308621 NM_001144916	651199	-	AK294026 NM_001144915	653586	-	BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11##NM_018117|WDR11|55717|WD repeat domain 11##NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AB084153|FGFR2|2263|fibroblast growth factor receptor 2##EF057068|FGFR2|2263|fibroblast growth factor receptor 2##EU826598|FGFR2|2263|fibroblast growth factor receptor 2##EU826599|FGFR2|2263|fibroblast growth factor receptor 2##EU826600|FGFR2|2263|fibroblast growth factor receptor 2##EU826601|FGFR2|2263|fibroblast growth factor receptor 2##M55614|FGFR2|2263|fibroblast growth factor receptor 2##Z71929|FGFR2|2263|fibroblast growth factor receptor 2##X56191|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144913|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144914|FGFR2|2263|fibroblast growth factor receptor 2##AK308621|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144916|FGFR2|2263|fibroblast growth factor receptor 2##AK294026|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144915|FGFR2|2263|fibroblast growth factor receptor 2	0.0	0.868213	CTCF.p2:-51:0.868
chr15	77695132	77695261	reg1008670.p2	5.329	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-222468	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-331652	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-331713	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	17347	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	17835	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	18066	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	0.0	0.0	
chr19	11317068	11317248	reg1007265.p2	5.329	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-8696	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	-8900	-	AB528156 AY639929 CU687364 NM_015493	-11933	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	33138	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	55980	-	AF133424 NM_012466 BC029908	89675	+	AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16	1.936245	0.0	denovo_WM_7:-83:0.406	denovo_WM_7:-84:0.354	denovo_WM_7:88:0.967
chr9	134544105	134544233	reg1007308.p2	5.329	+	AK057848 TSC_hg19_v1_chr9_-_134406625 BC091495 BC015547 AK022317 NM_001135954 NM_031432	-137519	-	TSC_hg19_v1_chr9_-_134406578 AF254133 CR457281 CU677347 AF237290 AF125106 AK295471 AK307475	-137622	-	AK315218 TSC_hg19_v1_chr9_+_134378402 AK293529 BC022877	-165734	+	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	41033	-	D21239 NM_005312	68755	-	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	71121	-	AK057848|UCK1|83549|uridine-cytidine kinase 1##BC091495|UCK1|83549|uridine-cytidine kinase 1##BC015547|UCK1|83549|uridine-cytidine kinase 1##AK022317|UCK1|83549|uridine-cytidine kinase 1##NM_001135954|UCK1|83549|uridine-cytidine kinase 1##NM_031432|UCK1|83549|uridine-cytidine kinase 1##AF254133|UCK1|83549|uridine-cytidine kinase 1##CR457281|UCK1|83549|uridine-cytidine kinase 1##AF237290|UCK1|83549|uridine-cytidine kinase 1##AF125106|UCK1|83549|uridine-cytidine kinase 1##AK295471|UCK1|83549|uridine-cytidine kinase 1##AK307475|UCK1|83549|uridine-cytidine kinase 1##AK315218|POMT1|10585|protein-O-mannosyltransferase 1##AK293529|POMT1|10585|protein-O-mannosyltransferase 1##BC022877|POMT1|10585|protein-O-mannosyltransferase 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1	0.010258	0.0	
chr1	41317529	41317636	reg1007299.p1	5.328	+	TSC_hg19_v1_chr1_+_41284599 AK074957	-32965	+	TSC_hg19_v1_chr1_+_41249485 AF105202 NM_004700 NM_172163	-68001	+	AF191744 AB385526 BT020081 U62296 TSC_hg19_v1_chr1_+_41204591	-113032	+	TSC_hg19_v1_chr1_-_41328006 BC052559 NM_133467	10427	-	BC035496 TSC_hg19_v1_chr1_-_41328020	10438	-	TSC_hg19_v1_chr1_+_41444968 NM_001905	127405	+	AK074957|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##AF105202|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##NM_004700|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##NM_172163|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##AF191744|NFYC|4802|nuclear transcription factor Y, gamma##BT020081|NFYC|4802|nuclear transcription factor Y, gamma##U62296|NFYC|4802|nuclear transcription factor Y, gamma##BC052559|CITED4|163732|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4##NM_133467|CITED4|163732|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4##BC035496|CITED4|163732|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4##NM_001905|CTPS|1503|CTP synthase	0.983746	0.0	denovo_WM_7:59:0.816
chr17	42320477	42320657	reg1006903.p2	5.328	+	BC050302 TSC_hg19_v1_chr17_+_42299409	-21222	+	AK292577 TSC_hg19_v1_chr17_-_42298971 AK292518	-21630	-	TSC_hg19_v1_chr17_-_42298282 BC042297 NM_001076683	-22288	-	BC101574 BC101570 M27819 NM_000342 X12609 TSC_hg19_v1_chr17_-_42345504	24902	-	AL133657 NM_001144825 NM_001144826 NM_006695 TSC_hg19_v1_chr17_+_42385950 AB209802 AK226045 BC006194 AK313669 BX537443 AF055026 CR456748 CU675291 U93871	65423	+	TSC_hg19_v1_chr17_-_42402172 BC096819 BC009330 AK026060 AL133584 BC001398 AK289357 AK295478 AK301139	81599	-	AK292577|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292518|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC042297|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076683|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC101574|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##BC101570|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##M27819|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##NM_000342|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##X12609|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##AL133657|RUNDC3A|10900|RUN domain containing 3A##NM_001144825|RUNDC3A|10900|RUN domain containing 3A##NM_001144826|RUNDC3A|10900|RUN domain containing 3A##NM_006695|RUNDC3A|10900|RUN domain containing 3A##AB209802|RUNDC3A|10900|RUN domain containing 3A##AK226045|RUNDC3A|10900|RUN domain containing 3A##BC006194|RUNDC3A|10900|RUN domain containing 3A##AK313669|RUNDC3A|10900|RUN domain containing 3A##BX537443|RUNDC3A|10900|RUN domain containing 3A##AF055026|RUNDC3A|10900|RUN domain containing 3A##CR456748|RUNDC3A|10900|RUN domain containing 3A##U93871|RUNDC3A|10900|RUN domain containing 3A##BC096819|SLC25A39|51629|solute carrier family 25, member 39##BC009330|SLC25A39|51629|solute carrier family 25, member 39##AK026060|SLC25A39|51629|solute carrier family 25, member 39##AL133584|SLC25A39|51629|solute carrier family 25, member 39##BC001398|SLC25A39|51629|solute carrier family 25, member 39##AK289357|SLC25A39|51629|solute carrier family 25, member 39##AK295478|SLC25A39|51629|solute carrier family 25, member 39##AK301139|SLC25A39|51629|solute carrier family 25, member 39	3.035654	0.0	denovo_WM_7:-52:0.495	denovo_WM_7:-78:0.213	denovo_WM_7:-79:0.577	denovo_WM_7:-94:0.725
chr4	42642976	42643130	reg1009793.p1	5.328	+	NM_001080505	-243198	+	AB126828 AB126829 NM_001159547 NM_207406	-488159	-	TSC_hg19_v1_chr4_-_42154719 AK125953 AB463533	-488397	-	BC109317 AB013452 AF067820 BC109318 AB587324 TSC_hg19_v1_chr4_-_42659111 AB209687 BC020943 AK295616 NM_001105529 NM_006095	16035	-	AB528853 NM_001080476	252228	+	AK298831 HQ258617 TSC_hg19_v1_chr4_-_44450559 BC132743 BC136793	1807500	-	NM_001080505|SHISA3|152573|shisa homolog 3 (Xenopus laevis)##AB126828|BEND4|389206|BEN domain containing 4##AB126829|BEND4|389206|BEN domain containing 4##NM_001159547|BEND4|389206|BEN domain containing 4##NM_207406|BEND4|389206|BEN domain containing 4##AK125953|BEND4|389206|BEN domain containing 4##BC109317|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB013452|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AF067820|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC109318|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB209687|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC020943|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001105529|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_006095|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001080476|GRXCR1|389207|glutaredoxin, cysteine rich 1##AK298831|KCTD8|386617|potassium channel tetramerisation domain containing 8##HQ258617|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC132743|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC136793|KCTD8|386617|potassium channel tetramerisation domain containing 8	0.986611	0.0	denovo_WM_7:-14:0.232	denovo_WM_7:-15:0.232	denovo_WM_7:-16:0.232	denovo_WM_7:-17:0.232
chr14	39885378	39885550	reg1010456.p2	5.327	+	TSC_hg19_v1_chr14_+_39736592 BC039017 AK315254 BC029513 BC051363 U73682	-148891	+	TSC_hg19_v1_chr14_+_39736287 NM_001247989 NM_001247990 NM_005930 NM_203355 U94780 BC064355 AF338234	-149097	+	TSC_hg19_v1_chr14_+_39735882 AK055791	-149585	+	TSC_hg19_v1_chr14_-_39901371 BX248772	15893	-	BC053537 BC068566 BC030611 NM_203301	16197	-	NM_152447 AK096627	2191303	+	BC039017|CTAGE5|4253|CTAGE family, member 5##AK315254|CTAGE5|4253|CTAGE family, member 5##BC029513|CTAGE5|4253|CTAGE family, member 5##BC051363|CTAGE5|4253|CTAGE family, member 5##U73682|CTAGE5|4253|CTAGE family, member 5##NM_001247989|CTAGE5|4253|CTAGE family, member 5##NM_001247990|CTAGE5|4253|CTAGE family, member 5##NM_005930|CTAGE5|4253|CTAGE family, member 5##NM_203355|CTAGE5|4253|CTAGE family, member 5##U94780|CTAGE5|4253|CTAGE family, member 5##BC064355|CTAGE5|4253|CTAGE family, member 5##AF338234|CTAGE5|4253|CTAGE family, member 5##AK055791|CTAGE5|4253|CTAGE family, member 5##BX248772|FBXO33|254170|F-box protein 33##BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5	0.989058	0.0	denovo_WM_7:4:0.971
chr5	169231978	169232066	reg1000115.p1	5.327	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-167722	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-167778	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-221301	+	AK055998 NM_001129891	175721	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	300949	+	BC030767 NM_001102609 BC092511	427974	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.0	0.0	
chr10	120068331	120068427	reg1009111.p1	5.326	+	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	-261949	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	-262335	-	TSC_hg19_v1_chr10_+_119302713 AB463605	-765636	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	33445	-	AK313269 AK290461 NM_004248	286779	-	CU691560 TSC_hg19_v1_chr10_-_120514298	445908	-	BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A##AK313269|PRLHR|2834|prolactin releasing hormone receptor##AK290461|PRLHR|2834|prolactin releasing hormone receptor##NM_004248|PRLHR|2834|prolactin releasing hormone receptor	0.999342	0.423629	CTCF.p2:-16:0.424	denovo_WM_7:23:0.898
chr14	21132311	21132491	reg1007870.p2	5.326	+	NM_001001968	-22552	-	HQ258082 AY665807 BC130347 BC130349 NM_001024822	-73471	-	BX161458 NM_145250	-73999	-	FJ236304 NM_001145 AK092422 NM_002937	19952	+	TSC_hg19_v1_chr14_+_21152776 AK313989 BC015520 BC054880 BX248010	20375	+	TSC_hg19_v1_chr14_+_21156940 NM_001097577 NM_194431 BC062698 BC020704	24531	+	NM_001001968|OR6S1|341799|olfactory receptor, family 6, subfamily S, member 1##HQ258082|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##AY665807|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BC130347|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BC130349|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##NM_001024822|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BX161458|RNASE11|122651|ribonuclease, RNase A family, 11 (non-active)##NM_145250|RNASE11|122651|ribonuclease, RNase A family, 11 (non-active)##FJ236304|ANG|283|angiogenin, ribonuclease, RNase A family, 5##NM_001145|ANG|283|angiogenin, ribonuclease, RNase A family, 5##AK092422|RNASE4|6038|ribonuclease, RNase A family, 4##NM_002937|RNASE4|6038|ribonuclease, RNase A family, 4##AK313989|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC015520|RNASE4|6038|ribonuclease, RNase A family, 4##BC054880|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BX248010|RNASE4|6038|ribonuclease, RNase A family, 4##NM_001097577|ANG|283|angiogenin, ribonuclease, RNase A family, 5##NM_194431|RNASE4|6038|ribonuclease, RNase A family, 4##BC062698|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC020704|ANG|283|angiogenin, ribonuclease, RNase A family, 5	0.991767	0.0	
chr4	148663246	148663382	reg1010298.p1	5.326	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	-9857	+	TSC_hg19_v1_chr4_+_148653238 AK123785	-10063	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	-58050	-	TSC_hg19_v1_chr4_-_149357955 AB587357	694668	-	TSC_hg19_v1_chr4_-_149363305 BC111758	700025	-	TSC_hg19_v1_chr4_-_149363539 AJ315514 M16801 AK304318 NM_000901 NM_001166104	700270	-	AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC111758|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AJ315514|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##M16801|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AK304318|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_000901|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_001166104|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2	0.523704	0.0	denovo_WM_7:0:0.396
chrX	49614664	49614808	reg1010263.p1	5.326	+	NM_007003 AK312039 AF275258 AJ005894 AK092503 AX747575	-20809	+	BC004861 AF058989 NM_003785	-154155	-	NM_001040663 NM_001468 BC005363 BC036094 BC069470	-251097	+	NM_001145073	29733	+	TSC_hg19_v1_chrX_+_49687274 AK092049 NM_001127898 NM_001127899 AK056560	72510	+	NM_000084 AK308089 TSC_hg19_v1_chrX_+_49832243 AK290940	217509	+	NM_007003|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK312039|PAGE4|9506|P antigen family, member 4 (prostate associated)##AF275258|PAGE4|9506|P antigen family, member 4 (prostate associated)##AJ005894|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK092503|PAGE4|9506|P antigen family, member 4 (prostate associated)##BC004861|PAGE1|8712|P antigen family, member 1 (prostate associated)##AF058989|PAGE1|8712|P antigen family, member 1 (prostate associated)##NM_003785|PAGE1|8712|P antigen family, member 1 (prostate associated)##NM_001040663|GAGE1|2543|G antigen 1##NM_001468|GAGE1|2543|G antigen 1##BC005363|GAGE1|2543|G antigen 1##BC036094|GAGE1|2543|G antigen 1##BC069470|GAGE1|2543|G antigen 1##NM_001145073|USP27X|389856|ubiquitin specific peptidase 27, X-linked##AK092049|CLCN5|1184|chloride channel 5##NM_001127898|CLCN5|1184|chloride channel 5##NM_001127899|CLCN5|1184|chloride channel 5##AK056560|CLCN5|1184|chloride channel 5##NM_000084|CLCN5|1184|chloride channel 5##AK308089|CLCN5|1184|chloride channel 5##AK290940|CLCN5|1184|chloride channel 5	0.141682	0.0	
chr10	12307065	12307245	reg1001405.p5	5.325	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-68929	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-68956	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-68973	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	84420	+	TSC_hg19_v1_chr10_+_12391709 BC035745	84562	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	84622	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	0.014733	0.0	
chr12	122222459	122222614	reg1010259.p1	5.325	+	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	-71792	+	BC057760 NM_173855	-114977	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-157893	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	9038	-	TSC_hg19_v1_chr12_-_122240852 AK311480	18321	-	TSC_hg19_v1_chr12_+_122242580 NM_015048 JF813787	20075	+	AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_015048|SETD1B|23067|SET domain containing 1B##JF813787|SETD1B|23067|SET domain containing 1B	0.983138	0.0	denovo_WM_7:-77:0.771
chr16	3053751	3053904	reg1008848.p1	5.325	+	TSC_hg19_v1_chr16_-_3030479 NM_004203 NM_182687	-23321	-	AK098452 TSC_hg19_v1_chr16_-_3030418 AK301926 AK303005 AK097642	-23420	-	TSC_hg19_v1_chr16_+_3019556 AK291373 AK054564 AK092173 AX747391 BC033703 AL832527 EU831903 EU831998 AY424282	-34257	+	AK091002 NM_020982	8629	+	BC008934 AK075329 NM_021195	14347	-	TSC_hg19_v1_chr16_+_3070368 NM_016639 BC002718 AB035480 AB035481 AF191148 BC064377 BC020538 DQ892968 DQ896216 AB590147	16528	+	NM_004203|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##NM_182687|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK098452|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK301926|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK303005|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK097642|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK291373|PAQR4|124222|progestin and adipoQ receptor family member IV##AK054564|PAQR4|124222|progestin and adipoQ receptor family member IV##AK092173|PAQR4|124222|progestin and adipoQ receptor family member IV##BC033703|PAQR4|124222|progestin and adipoQ receptor family member IV##AL832527|PAQR4|124222|progestin and adipoQ receptor family member IV##EU831903|PAQR4|124222|progestin and adipoQ receptor family member IV##EU831998|PAQR4|124222|progestin and adipoQ receptor family member IV##AY424282|PAQR4|124222|progestin and adipoQ receptor family member IV##AK091002|CLDN9|9080|claudin 9##NM_020982|CLDN9|9080|claudin 9##BC008934|CLDN6|9074|claudin 6##AK075329|CLDN6|9074|claudin 6##NM_021195|CLDN6|9074|claudin 6##NM_016639|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##BC002718|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##AB035480|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##AB035481|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##AF191148|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##BC064377|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##BC020538|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##DQ892968|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A##DQ896216|TNFRSF12A|51330|tumor necrosis factor receptor superfamily, member 12A	0.928264	0.049535	denovo_WM_7:-11:0.628
chr3	56760228	56760368	reg1008776.p1	5.325	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-43091	-	BC029354 NM_015224	-62225	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-169052	+	AK293864 AB209661 NM_001128616	49371	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	75613	-	AY221117 NM_181727 BC126274 BC136498	334205	+	BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12	1.978222	0.0	denovo_WM_7:-43:0.301	denovo_WM_7:-46:0.244
chr7	18385393	18385495	reg1008566.p2	5.325	+	AK097178 TSC_hg19_v1_chr7_+_18330071	-55385	+	TSC_hg19_v1_chr7_+_18126583 AK304298 NM_001204144	-258853	+	BC062797 BC005309 M57423 NM_175886	-317979	-	TSC_hg19_v1_chr7_+_18535361 BC092441 BC150328 AB018287 AJ459808 BC152405 NM_001204145 NM_001204146 NM_014707 NM_178423 AK297404 AK316109 AY429540	149955	+	CR749550 EU832154 EU832248 TSC_hg19_v1_chr7_+_18535882 NM_058176 NM_178425 AB385379 AY032737 AY032738 AY197371 EU832247 BC111735	150427	+	NM_001204147 NM_001204148 TSC_hg19_v1_chr7_+_18548932 AK304410	163479	+	AK097178|HDAC9|9734|histone deacetylase 9##AK304298|HDAC9|9734|histone deacetylase 9##NM_001204144|HDAC9|9734|histone deacetylase 9##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC150328|HDAC9|9734|histone deacetylase 9##AB018287|HDAC9|9734|histone deacetylase 9##AJ459808|HDAC9|9734|histone deacetylase 9##BC152405|HDAC9|9734|histone deacetylase 9##NM_001204145|HDAC9|9734|histone deacetylase 9##NM_001204146|HDAC9|9734|histone deacetylase 9##NM_014707|HDAC9|9734|histone deacetylase 9##NM_178423|HDAC9|9734|histone deacetylase 9##AK297404|HDAC9|9734|histone deacetylase 9##AK316109|HDAC9|9734|histone deacetylase 9##AY429540|HDAC9|9734|histone deacetylase 9##CR749550|HDAC9|9734|histone deacetylase 9##EU832154|HDAC9|9734|histone deacetylase 9##EU832248|HDAC9|9734|histone deacetylase 9##NM_058176|HDAC9|9734|histone deacetylase 9##NM_178425|HDAC9|9734|histone deacetylase 9##AY032737|HDAC9|9734|histone deacetylase 9##AY032738|HDAC9|9734|histone deacetylase 9##AY197371|HDAC9|9734|histone deacetylase 9##EU832247|HDAC9|9734|histone deacetylase 9##BC111735|HDAC9|9734|histone deacetylase 9##NM_001204147|HDAC9|9734|histone deacetylase 9##NM_001204148|HDAC9|9734|histone deacetylase 9##AK304410|HDAC9|9734|histone deacetylase 9	0.0	0.335765	CTCF.p2:28:0.336
chr10	129861486	129861599	reg1009320.p1	5.324	+	BX648180 NM_130435 BC071573 TSC_hg19_v1_chr10_+_129845875 AK290414 AJ430580 AJ315969	-15688	+	TSC_hg19_v1_chr10_+_129705366 AF406557 BC050062 X54134	-156087	+	TSC_hg19_v1_chr10_+_129705334 BC031078 NM_006504	-156220	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	62986	-	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	1403929	+	TSC_hg19_v1_chr10_+_131265507 BC000824	1403972	+	BX648180|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_130435|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC071573|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AK290414|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ430580|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ315969|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AF406557|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC050062|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##X54134|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC031078|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_006504|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase	0.0	0.0	
chr1	205282989	205283128	reg1001264.p2	5.324	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-46424	+	AK293734 NM_001242925	-85000	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-85975	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	7785	-	BC036076 TSC_hg19_v1_chr1_-_205313311	30252	-	AK299227 AK001610 NM_018203 AK096590	42982	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.0	0.0	
chr2	29306104	29306224	reg1009960.p2	5.324	+	NM_001029883	-9038	-	AK296977 NM_199280	-102001	+	TSC_hg19_v1_chr2_+_29117555 NM_015131 D26488	-188626	+	TSC_hg19_v1_chr2_+_29338370 BC013862 NM_024692 AL834443	32191	+	EU788003 EU788004 EU788005 EU788006 EU788007 EU788008 EU788009 EU788010 FJ838786 FJ838787 U62540 TSC_hg19_v1_chr2_-_30144453 AK296218 NM_004304	838290	-	NM_001127399 NM_001127400 NM_001127401 NM_016061 TSC_hg19_v1_chr2_+_30369786	1063606	+	NM_001029883|C2orf71|388939|chromosome 2 open reading frame 71##AK296977|FAM179A|165186|family with sequence similarity 179, member A##NM_199280|FAM179A|165186|family with sequence similarity 179, member A##NM_015131|WDR43|23160|WD repeat domain 43##D26488|WDR43|23160|WD repeat domain 43##BC013862|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##NM_024692|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##AL834443|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##EU788003|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788004|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788005|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788006|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788007|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788008|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788009|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788010|ALK|238|anaplastic lymphoma receptor tyrosine kinase##FJ838786|ALK|238|anaplastic lymphoma receptor tyrosine kinase##FJ838787|ALK|238|anaplastic lymphoma receptor tyrosine kinase##U62540|ALK|238|anaplastic lymphoma receptor tyrosine kinase##AK296218|ALK|238|anaplastic lymphoma receptor tyrosine kinase##NM_004304|ALK|238|anaplastic lymphoma receptor tyrosine kinase##NM_001127399|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127400|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127401|YPEL5|51646|yippee-like 5 (Drosophila)##NM_016061|YPEL5|51646|yippee-like 5 (Drosophila)	0.997239	0.0	denovo_WM_7:27:0.841
chr3	196778567	196778747	reg1008547.p2	5.324	+	TSC_hg19_v1_chr3_-_196756689 NM_033316 NM_005929	-21955	-	BT007377 AB527337 M12154 BC093920 BC111947 BC143257 BC002623 BC001875 BC007550 BC053510 BC071910 TSC_hg19_v1_chr3_-_196756658 BC032752	-22034	-	BC032042 TSC_hg19_v1_chr3_+_196729798	-48847	+	AK294855 NM_001204387 NM_001204388	132344	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	246276	-	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	246817	-	NM_033316|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##NM_005929|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BT007377|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##M12154|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC093920|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC111947|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC143257|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC002623|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC001875|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC007550|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC053510|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC071910|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032752|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032042|MFI2-AS1|100507057|MFI2 antisense RNA 1 (non-protein coding)##AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)	0.997826	0.0	
chr12	68710943	68711080	reg1010862.p1	5.323	+	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-63707	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-91459	-	X62468 X62469 X62470 X62471 X62472 X62473 X62474 AF506749 AY044154 AY255839 X87308 AB451324 AB451453 AB590804 AY255837 AM903379 V00543 X13274 NM_000619 X01992 BC070256	-157589	-	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	15095	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	293635	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	293684	+	BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##X62468|IFNG|3458|interferon, gamma##X62469|IFNG|3458|interferon, gamma##X62470|IFNG|3458|interferon, gamma##X62471|IFNG|3458|interferon, gamma##X62472|IFNG|3458|interferon, gamma##X62473|IFNG|3458|interferon, gamma##X62474|IFNG|3458|interferon, gamma##AF506749|IFNG|3458|interferon, gamma##AY044154|IFNG|3458|interferon, gamma##AY255839|IFNG|3458|interferon, gamma##X87308|IFNG|3458|interferon, gamma##AB451324|IFNG|3458|interferon, gamma##AB451453|IFNG|3458|interferon, gamma##AY255837|IFNG|3458|interferon, gamma##AM903379|IFNG|3458|interferon, gamma##V00543|IFNG|3458|interferon, gamma##X13274|IFNG|3458|interferon, gamma##NM_000619|IFNG|3458|interferon, gamma##X01992|IFNG|3458|interferon, gamma##BC070256|IFNG|3458|interferon, gamma##BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family	0.0	0.995729	CTCF.p2:17:0.996
chr18	5974896	5975076	reg1003952.p1	5.323	+	NM_001080209	-82884	-	TSC_hg19_v1_chr18_-_5630663 BC008377	-344339	-	AF069072 AB023204 NM_012307 TSC_hg19_v1_chr18_-_5543997 AK128531	-430998	-	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	439929	-	NM_001243517	536428	+	NM_001010000 BX648684 AK308259 AK302026	859479	+	NM_001080209|TMEM200C|645369|transmembrane protein 200C##BC008377|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AF069072|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AB023204|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##NM_012307|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AK128531|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28	0.990779	0.0	denovo_WM_7:-10:0.767
chr4	71620256	71620423	reg1008410.p2	5.323	+	TSC_hg19_v1_chr4_+_71587713 NM_001037442 NM_014961 BC051716 BC053837 BC098433 AB020678 BC071988	-32619	+	BC030809 TSC_hg19_v1_chr4_-_71571018	-49341	-	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	-49520	+	AK094806 NM_001098477	84864	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	85238	-	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	85298	-	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3##NM_014961|RUFY3|22902|RUN and FYVE domain containing 3##BC051716|RUFY3|22902|RUN and FYVE domain containing 3##BC053837|RUFY3|22902|RUN and FYVE domain containing 3##BC098433|RUFY3|22902|RUN and FYVE domain containing 3##AB020678|RUFY3|22902|RUN and FYVE domain containing 3##BC071988|RUFY3|22902|RUN and FYVE domain containing 3##BC030809|LOC641510|641510|uncharacterized LOC641510##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1	0.995136	0.0	denovo_WM_7:-86:0.974
chr1	32647637	32647751	reg1009077.p1	5.322	+	TSC_hg19_v1_chr1_+_32645848 AF516206 BC080578 BC103823 BC103824 BC103825 AM393586 AB463303	-1817	+	TSC_hg19_v1_chr1_+_32645661 AL832637	-2038	+	TSC_hg19_v1_chr1_+_32645343 AK096939 NM_175852	-2353	+	BC065263 TSC_hg19_v1_chr1_+_32661024	13327	+	AK092702 NM_024296 AK225113 BC002462 BC022848	18532	+	NM_001160042 NM_018134 TSC_hg19_v1_chr1_+_32671269 AK223272 AK001409 AK299235 AK307853 BC098250 BC098260 BC098317 BC098366	23573	+	AF516206|TXLNA|200081|taxilin alpha##BC080578|TXLNA|200081|taxilin alpha##BC103823|TXLNA|200081|taxilin alpha##BC103824|TXLNA|200081|taxilin alpha##BC103825|TXLNA|200081|taxilin alpha##AM393586|TXLNA|200081|taxilin alpha##AL832637|TXLNA|200081|taxilin alpha##AK096939|TXLNA|200081|taxilin alpha##NM_175852|TXLNA|200081|taxilin alpha##BC065263|TXLNA|200081|taxilin alpha##AK092702|CCDC28B|79140|coiled-coil domain containing 28B##NM_024296|CCDC28B|79140|coiled-coil domain containing 28B##AK225113|CCDC28B|79140|coiled-coil domain containing 28B##BC002462|CCDC28B|79140|coiled-coil domain containing 28B##BC022848|CCDC28B|79140|coiled-coil domain containing 28B##NM_001160042|IQCC|55721|IQ motif containing C##NM_018134|IQCC|55721|IQ motif containing C##AK223272|IQCC|55721|IQ motif containing C##AK001409|IQCC|55721|IQ motif containing C##AK299235|IQCC|55721|IQ motif containing C##AK307853|IQCC|55721|IQ motif containing C##BC098250|IQCC|55721|IQ motif containing C##BC098260|IQCC|55721|IQ motif containing C##BC098317|IQCC|55721|IQ motif containing C##BC098366|IQCC|55721|IQ motif containing C	0.999916	0.014513	
chr13	36822989	36823113	reg1009872.p1	5.322	+	AB527575 AK000456 BC025383 NM_017826	-34343	-	NM_004734 TSC_hg19_v1_chr13_-_36705517	-117535	-	AK295102 TSC_hg19_v1_chr13_-_36705468	-117578	-	BC171867 BC146975 BC171872 BC171874 BC171880 BC171881 BC171882 BC171884 TSC_hg19_v1_chr13_-_36871939 AK131058 AK308999	48871	-	BC013944 TSC_hg19_v1_chr13_-_36872001 BC037403 AK301863 NM_001144981 NM_001144982 NM_001144983 NM_001144984 NM_001144985 NM_001144986 NM_001198908 NM_001198910	48941	-	TSC_hg19_v1_chr13_-_36920464 AK001949 AB011182 AY123329 BC047083	97390	-	AK000456|SOHLH2|54937|spermatogenesis and oogenesis specific basic helix-loop-helix 2##BC025383|SOHLH2|54937|spermatogenesis and oogenesis specific basic helix-loop-helix 2##NM_017826|SOHLH2|54937|spermatogenesis and oogenesis specific basic helix-loop-helix 2##NM_004734|DCLK1|9201|doublecortin-like kinase 1##AK295102|DCLK1|9201|doublecortin-like kinase 1##BC171867|CCDC169|728591|coiled-coil domain containing 169##BC146975|CCDC169|728591|coiled-coil domain containing 169##BC171872|CCDC169|728591|coiled-coil domain containing 169##BC171874|CCDC169|728591|coiled-coil domain containing 169##BC171880|CCDC169|728591|coiled-coil domain containing 169##BC171881|CCDC169|728591|coiled-coil domain containing 169##BC171882|CCDC169|728591|coiled-coil domain containing 169##BC171884|CCDC169|728591|coiled-coil domain containing 169##AK131058|CCDC169|728591|coiled-coil domain containing 169##AK308999|CCDC169|728591|coiled-coil domain containing 169##BC013944|CCDC169|728591|coiled-coil domain containing 169##BC037403|CCDC169|728591|coiled-coil domain containing 169##AK301863|CCDC169-SOHLH2|100526761|CCDC169-SOHLH2 readthrough##NM_001144981|CCDC169|728591|coiled-coil domain containing 169##NM_001144982|CCDC169|728591|coiled-coil domain containing 169##NM_001144983|CCDC169|728591|coiled-coil domain containing 169##NM_001144984|CCDC169|728591|coiled-coil domain containing 169##NM_001144985|CCDC169|728591|coiled-coil domain containing 169##NM_001144986|CCDC169|728591|coiled-coil domain containing 169##NM_001198908|CCDC169|728591|coiled-coil domain containing 169##NM_001198910|CCDC169-SOHLH2|100526761|CCDC169-SOHLH2 readthrough##AK001949|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AB011182|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AY123329|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##BC047083|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)	0.697636	0.0	denovo_WM_7:-4:0.513
chr14	58797798	58797921	reg1008743.p1	5.322	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	-32541	+	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	-32618	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	-33026	-	AY358266 NM_207377 BC137557 BC137563 BC144709	64785	+	AF150100 TSC_hg19_v1_chr14_-_58893893 AK000666 AK312095	96029	-	AK302836 NM_001244189 NM_001244190 NM_001244191 NM_001244192 AB011158 AK302635 AY359881	96268	+	S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##AY358266|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##NM_207377|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC137557|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC137563|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC144709|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##AF150100|TIMM9|26520|translocase of inner mitochondrial membrane 9 homolog (yeast)##AK000666|TIMM9|26520|translocase of inner mitochondrial membrane 9 homolog (yeast)##AK312095|TIMM9|26520|translocase of inner mitochondrial membrane 9 homolog (yeast)##AK302836|KIAA0586|9786|KIAA0586##NM_001244189|KIAA0586|9786|KIAA0586##NM_001244190|KIAA0586|9786|KIAA0586##NM_001244191|KIAA0586|9786|KIAA0586##NM_001244192|KIAA0586|9786|KIAA0586##AB011158|KIAA0586|9786|KIAA0586##AK302635|KIAA0586|9786|KIAA0586##AY359881|KIAA0586|9786|KIAA0586	0.0	0.0	
chr16	47507044	47507149	reg1004283.p1	5.322	+	TSC_hg19_v1_chr16_+_47495241 X84908 CR936710 BC033657 AK309226	-11857	+	TSC_hg19_v1_chr16_+_47495206 NM_000293 NM_001031835 AK298588	-11908	+	TSC_hg19_v1_chr16_-_47495158 AF212247 AK301908	-11939	-	AY196326 AY040220 NM_033226	673524	-	AY040219 NM_033151	759085	-	AF367202 AF411579 NM_032583 NM_145186	761991	-	X84908|PHKB|5257|phosphorylase kinase, beta##CR936710|PHKB|5257|phosphorylase kinase, beta##BC033657|PHKB|5257|phosphorylase kinase, beta##AK309226|PHKB|5257|phosphorylase kinase, beta##NM_000293|PHKB|5257|phosphorylase kinase, beta##NM_001031835|PHKB|5257|phosphorylase kinase, beta##AF212247|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK301908|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AY196326|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040220|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##NM_033226|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040219|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_033151|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11	1.987753	0.0	denovo_WM_7:40:0.320	denovo_WM_7:41:0.258	denovo_WM_7:58:0.249	denovo_WM_7:59:0.311
chr17	67565406	67565554	reg1009509.p2	5.322	+	TSC_hg19_v1_chr17_+_67498396 U39064	-67000	+	AK290747 NM_002758 U39065 AK225719 X96757 BC012009	-154604	+	TSC_hg19_v1_chr17_-_67323275 BC029426 AJ512612 AJ275973 AK292592 NM_172232	-242191	-	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	505950	+	BC033038 NM_170742	535514	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	600216	+	U39064|MAP2K6|5608|mitogen-activated protein kinase kinase 6##AK290747|MAP2K6|5608|mitogen-activated protein kinase kinase 6##NM_002758|MAP2K6|5608|mitogen-activated protein kinase kinase 6##U39065|MAP2K6|5608|mitogen-activated protein kinase kinase 6##AK225719|MAP2K6|5608|mitogen-activated protein kinase kinase 6##X96757|MAP2K6|5608|mitogen-activated protein kinase kinase 6##BC012009|MAP2K6|5608|mitogen-activated protein kinase kinase 6##BC029426|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ512612|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ275973|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AK292592|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_172232|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2	0.37622	0.0	denovo_WM_7:92:0.225
chr5	55401633	55401803	reg1008666.p1	5.322	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-110955	-	NM_001242636 NM_001242639	-252569	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-254449	+	AK123389 NM_024669	127467	-	NM_005921	709181	+	TSC_hg19_v1_chr5_+_56111375 AK307828	709646	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.400054	0.0	denovo_WM_7:-2:0.400
chr8	56852325	56852505	reg1005783.p1	5.322	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-59895	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-60020	+	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	-60050	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	134671	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	174125	-	TSC_hg19_v1_chr8_-_57123833 U65002	271420	-	AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1	0.0	0.0	
chr1	228947086	228947191	reg1006645.p1	5.321	+	TSC_hg19_v1_chr1_+_228871199 AB209511 AK289971 BC040076 AF282258 AB074878 AB051826 AF378087	-75839	+	TSC_hg19_v1_chr1_+_228870806 NM_021205 AF211836	-76294	+	AK055963 TSC_hg19_v1_chr1_+_228783500	-163707	+	AK313807 TSC_hg19_v1_chr1_+_229406857 BC004309 NM_004578 AY585832	459747	+	BC002438 TSC_hg19_v1_chr1_+_229407039 AK223009 M28211 AB463206 AF498934 AM392940 AM393585 DQ892636 DQ895874	459912	+	BC107681 NM_006542	492990	+	AB209511|RHOU|58480|ras homolog gene family, member U##AK289971|RHOU|58480|ras homolog gene family, member U##BC040076|RHOU|58480|ras homolog gene family, member U##AF282258|RHOU|58480|ras homolog gene family, member U##AB074878|RHOU|58480|ras homolog gene family, member U##AB051826|RHOU|58480|ras homolog gene family, member U##AF378087|RHOU|58480|ras homolog gene family, member U##NM_021205|RHOU|58480|ras homolog gene family, member U##AF211836|RHOU|58480|ras homolog gene family, member U##AK055963|DUSP5P|574029|dual specificity phosphatase 5 pseudogene##AK313807|RAB4A|5867|RAB4A, member RAS oncogene family##BC004309|RAB4A|5867|RAB4A, member RAS oncogene family##NM_004578|RAB4A|5867|RAB4A, member RAS oncogene family##AY585832|RAB4A|5867|RAB4A, member RAS oncogene family##BC002438|RAB4A|5867|RAB4A, member RAS oncogene family##AK223009|RAB4A|5867|RAB4A, member RAS oncogene family##M28211|RAB4A|5867|RAB4A, member RAS oncogene family##AF498934|RAB4A|5867|RAB4A, member RAS oncogene family##AM392940|RAB4A|5867|RAB4A, member RAS oncogene family##AM393585|RAB4A|5867|RAB4A, member RAS oncogene family##DQ892636|RAB4A|5867|RAB4A, member RAS oncogene family##DQ895874|RAB4A|5867|RAB4A, member RAS oncogene family##BC107681|SPHAR|10638|S-phase response (cyclin related)##NM_006542|SPHAR|10638|S-phase response (cyclin related)	0.783657	0.0	denovo_WM_7:16:0.636
chr13	79959946	79960126	reg1004711.p1	5.321	+	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	-726743	-	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	-782313	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	-789754	+	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	19918	-	BC030806 TSC_hg19_v1_chr13_-_79980382	20347	-	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	20415	+	AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##BC030806|RBM26|64062|RNA binding motif protein 26##AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)	0.0	0.0	
chr16	19910816	19910951	reg1008206.p1	5.321	+	AK295204 AF202640 TSC_hg19_v1_chr16_-_19896168 BC034467 AF181862 NM_016235 AK294680 AK075119 AK315989 AK296754	-14719	-	TSC_hg19_v1_chr16_-_19729532 BC117562 NM_001012991	-181396	-	TSC_hg19_v1_chr16_+_19727698 AF520569 AF520570 AK000122 NM_153208	-183146	+	AB196529 AY635179 BC137237 BC137238 BC144547 NM_001002911 AK291384	174204	-	U36221 AK312277 BX647831 BX648201 BX649067 BX648023 NM_001007240 NM_001007241 NM_001007242 NM_001502 CR749600	427970	-	AK127643 AK055722 AK091961 AK096043 AX747279 M15881 BC035975 AK127648 NM_001008389 NM_003361	453149	-	AK295204|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AF202640|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##BC034467|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AF181862|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##NM_016235|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK294680|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK075119|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK315989|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK296754|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##BC117562|C16orf88|400506|chromosome 16 open reading frame 88##NM_001012991|C16orf88|400506|chromosome 16 open reading frame 88##AF520569|IQCK|124152|IQ motif containing K##AF520570|IQCK|124152|IQ motif containing K##AK000122|IQCK|124152|IQ motif containing K##NM_153208|IQCK|124152|IQ motif containing K##AB196529|GPR139|124274|G protein-coupled receptor 139##AY635179|GPR139|124274|G protein-coupled receptor 139##BC137237|GPR139|124274|G protein-coupled receptor 139##BC137238|GPR139|124274|G protein-coupled receptor 139##NM_001002911|GPR139|124274|G protein-coupled receptor 139##AK291384|GPR139|124274|G protein-coupled receptor 139##U36221|GP2|2813|glycoprotein 2 (zymogen granule membrane)##AK312277|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX647831|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX648201|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX649067|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX648023|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001007240|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001007241|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001007242|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001502|GP2|2813|glycoprotein 2 (zymogen granule membrane)##CR749600|GP2|2813|glycoprotein 2 (zymogen granule membrane)##AK127643|UMOD|7369|uromodulin##AK055722|UMOD|7369|uromodulin##AK091961|UMOD|7369|uromodulin##AK096043|UMOD|7369|uromodulin##M15881|UMOD|7369|uromodulin##BC035975|UMOD|7369|uromodulin##AK127648|UMOD|7369|uromodulin##NM_001008389|UMOD|7369|uromodulin##NM_003361|UMOD|7369|uromodulin	0.0	0.03679	
chr16	85719987	85720139	reg1010613.p2	5.321	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	-73110	+	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	-75042	+	BC093665 BC111944 AK126284 NM_198491	-574009	-	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	2479	-	BC003186 NM_016095 TSC_hg19_v1_chr16_-_85722590	2536	-	TSC_hg19_v1_chr16_-_85784703 NM_206967	64625	-	NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC003186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_016095|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_206967|C16orf74|404550|chromosome 16 open reading frame 74	0.996938	0.0	denovo_WM_7:-31:0.841
chr18	5980268	5980430	reg1008372.p2	5.321	+	NM_001080209	-88247	-	TSC_hg19_v1_chr18_-_5630663 BC008377	-349702	-	AF069072 AB023204 NM_012307 TSC_hg19_v1_chr18_-_5543997 AK128531	-436361	-	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	434566	-	NM_001243517	531065	+	NM_001010000 BX648684 AK308259 AK302026	854116	+	NM_001080209|TMEM200C|645369|transmembrane protein 200C##BC008377|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AF069072|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AB023204|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##NM_012307|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AK128531|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28	0.999216	0.0	denovo_WM_7:88:0.239	denovo_WM_7:89:0.239	denovo_WM_7:90:0.239	denovo_WM_7:91:0.239
chr2	192796148	192796291	reg1009370.p2	5.321	+	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	-84248	-	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	-84481	-	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	-253357	+	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	263095	-	BC008973 AB017269 AY358907 AK074632 AL157430 AF179274 NM_016192 TSC_hg19_v1_chr2_-_193059657 AF242222 AK222691 AK315376	263410	-	BC029413 NM_001127257 CR749813	3725356	+	AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##BC008973|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB017269|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AY358907|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074632|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AL157430|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF179274|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##NM_016192|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF242222|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK222691|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK315376|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10	0.0	0.0	
chr4	40992981	40993139	reg1007694.p1	5.321	+	BC088372 TSC_hg19_v1_chr4_-_40936716	-56382	-	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	-133885	-	BC042401 NM_024677 BC036568 AK024063	-241114	+	TSC_hg19_v1_chr4_-_41216560 BC027946 AK304247 AK226179 NM_001166050 NM_004307 NM_173075	223509	-	TSC_hg19_v1_chr4_+_41258897 NM_004181	265836	+	TSC_hg19_v1_chr4_+_41258913 BC000332 BC018838	265858	+	BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##BC027946|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK304247|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK226179|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166050|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004307|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_173075|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004181|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC000332|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC018838|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	0.995094	0.0	denovo_WM_7:-24:0.880
chr6_dbb_hap3	4562015	4562186	reg1009010.p2	5.321	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.013218	0.0	denovo_WM_7:20:0.440
chr9	70078694	70078816	reg1008424.p1	5.321	+	AL136793 NM_001098805	-696775	+	AF265442 BC069006 AK293173 NM_001085457	-816201	-	NM_001085476	-876552	-	NM_001126334	100059	-	NM_001099279 NM_199244	350975	-	CU688346 TSC_hg19_v1_chr9_-_70490092	411326	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.996044	0.0	denovo_WM_7:6:0.315	denovo_WM_7:7:0.315	denovo_WM_7:8:0.315
chr3	25826569	25826742	reg1009325.p1	5.320	+	TSC_hg19_v1_chr3_-_25824955 NM_001145293 NM_001145295 NM_018297	-1685	-	TSC_hg19_v1_chr3_-_25824932 BC017220 AF250924 BC007226	-1734	-	TSC_hg19_v1_chr3_-_25824906 BC000963 AK022471 DQ893509 DQ896501 AK310473	-1768	-	AK296047 NM_001145294	4857	-	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	4925	+	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	837645	+	NM_001145293|NGLY1|55768|N-glycanase 1##NM_001145295|NGLY1|55768|N-glycanase 1##NM_018297|NGLY1|55768|N-glycanase 1##BC017220|NGLY1|55768|N-glycanase 1##AF250924|NGLY1|55768|N-glycanase 1##BC007226|NGLY1|55768|N-glycanase 1##BC000963|NGLY1|55768|N-glycanase 1##AK022471|NGLY1|55768|N-glycanase 1##DQ893509|NGLY1|55768|N-glycanase 1##DQ896501|NGLY1|55768|N-glycanase 1##AK310473|NGLY1|55768|N-glycanase 1##AK296047|NGLY1|55768|N-glycanase 1##NM_001145294|NGLY1|55768|N-glycanase 1##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B	0.999403	0.0	
chr13	95933246	95933357	reg1006362.p1	5.319	+	X65666 X71136 AB464716 NM_007084	-568983	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-679199	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-684805	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	20411	-	NM_001160100 NM_182848 AK055855	152553	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	271673	+	X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10	0.0	0.0	
chr6	27870262	27870362	reg1010755.p2	5.319	+	BX647290 NM_003527 BC106720 EU446972	-9095	+	CU689524 AB590325 DQ891187 DQ894370 BC071668 TSC_hg19_v1_chr6_-_27860964 AK312224 NM_003514	-9366	-	AB463735 NM_003535	-11743	-	BC136881 BC136901 NM_033057	9861	-	BC109251 BC110457 NM_012367	54706	+	NM_003447	178169	+	NM_003527|HIST1H2BO|8348|histone cluster 1, H2bo##BC106720|HIST1H2BO|8348|histone cluster 1, H2bo##EU446972|HIST1H2BO|8348|histone cluster 1, H2bo##DQ891187|HIST1H2AM|8336|histone cluster 1, H2am##DQ894370|HIST1H2AM|8336|histone cluster 1, H2am##NM_003514|HIST1H2AM|8336|histone cluster 1, H2am##NM_003535|HIST1H3J|8356|histone cluster 1, H3j##BC136881|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##BC136901|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##NM_033057|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##BC109251|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##BC110457|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##NM_012367|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##NM_003447|ZNF165|7718|zinc finger protein 165	0.99431	0.0	denovo_WM_7:-49:0.589
chr1	111670977	111671098	reg1001326.p2	5.318	+	TSC_hg19_v1_chr1_-_111506545 AY190122 NM_001006945 NM_018372 CR933637	-164486	-	BC040693 TSC_hg19_v1_chr1_+_111415791 M37033 M60871	-255235	+	NM_000560 TSC_hg19_v1_chr1_+_111415769 AK313582 AK298723	-255282	+	BC049196 NM_001007794 AL833102 TSC_hg19_v1_chr1_+_111682370	11272	+	AL833098 TSC_hg19_v1_chr1_-_111682678 AY358492	11647	-	TSC_hg19_v1_chr1_-_111682718 AY336747 BC091509	11694	-	AY190122|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_001006945|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_018372|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##BC040693|CD53|963|CD53 molecule##M37033|CD53|963|CD53 molecule##M60871|CD53|963|CD53 molecule##NM_000560|CD53|963|CD53 molecule##AK313582|CD53|963|CD53 molecule##AK298723|CD53|963|CD53 molecule##BC049196|CEPT1|10390|choline/ethanolamine phosphotransferase 1##NM_001007794|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833102|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833098|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY358492|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY336747|DRAM2|128338|DNA-damage regulated autophagy modulator 2##BC091509|DRAM2|128338|DNA-damage regulated autophagy modulator 2	0.0	0.0	
chr7	100230394	100230520	reg1001700.p1	5.318	+	TSC_hg19_v1_chr7_+_100210156 NM_001040098 NM_001040099 NM_023948 BC011653 BC009482 BC028475 BC005042	-20385	+	NM_001040097 TSC_hg19_v1_chr7_+_100209784	-20688	+	NM_002593 TSC_hg19_v1_chr7_+_100199985 AK313748 BC000574 L33799 AB008549 AK298364 BC033205 DQ891923 DQ895108	-30478	+	TSC_hg19_v1_chr7_-_100230676 AK000421	244	-	AF085928 NM_001206855	746	-	BC150192 AF067864 BC142630 NM_003227	8697	-	NM_001040098|MOSPD3|64598|motile sperm domain containing 3##NM_001040099|MOSPD3|64598|motile sperm domain containing 3##NM_023948|MOSPD3|64598|motile sperm domain containing 3##BC011653|MOSPD3|64598|motile sperm domain containing 3##BC009482|MOSPD3|64598|motile sperm domain containing 3##BC028475|MOSPD3|64598|motile sperm domain containing 3##BC005042|MOSPD3|64598|motile sperm domain containing 3##NM_001040097|MOSPD3|64598|motile sperm domain containing 3##NM_002593|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK313748|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC000574|PCOLCE|5118|procollagen C-endopeptidase enhancer##L33799|PCOLCE|5118|procollagen C-endopeptidase enhancer##AB008549|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK298364|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC033205|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ891923|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ895108|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK000421|TFR2|7036|transferrin receptor 2##AF085928|TFR2|7036|transferrin receptor 2##NM_001206855|TFR2|7036|transferrin receptor 2##BC150192|TFR2|7036|transferrin receptor 2##AF067864|TFR2|7036|transferrin receptor 2##BC142630|TFR2|7036|transferrin receptor 2##NM_003227|TFR2|7036|transferrin receptor 2	1.510342	0.0	denovo_WM_7:-107:0.418
chr10	93992817	93992902	reg1008325.p1	5.317	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-309167	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-309343	+	AK315427 BC025966 AK075410 NM_152429	-323639	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	10160	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	57977	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	58195	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.0	0.0	
chr13	33671205	33671285	reg1005690.p2	5.317	+	TSC_hg19_v1_chr13_+_33590478 AB005142 NM_004795	-80722	+	TSC_hg19_v1_chr13_+_33160686 BC039256 U95825 BC070274 AK299340	-510562	+	TSC_hg19_v1_chr13_+_33160649 AB023196	-510606	+	AY082590 BC046563 NM_001243466 NM_178007	88970	-	AL049801 AY082591 AK091804 NM_001243474 NM_052851	108919	-	AY366448 AY082589 AY082592 AK312888 AK308430 NM_178006	188622	-	AB005142|KL|9365|klotho##NM_004795|KL|9365|klotho##BC039256|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##U95825|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##BC070274|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AK299340|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AB023196|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AY082590|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##BC046563|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243466|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178007|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AL049801|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082591|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK091804|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243474|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_052851|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY366448|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082589|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082592|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK312888|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK308430|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178006|STARD13|90627|StAR-related lipid transfer (START) domain containing 13	0.769955	0.0	
chr16	90040534	90040656	reg1007237.p1	5.317	+	NM_145039 TSC_hg19_v1_chr16_-_90039285	-1333	-	TSC_hg19_v1_chr16_+_90039043 BC045753	-1548	+	TSC_hg19_v1_chr16_+_90038996 AK126911 AK056488 AK097044 AK091293 AX746898	-1586	+	BC000700 NM_024043 AK090965 AX746707	35978	-	AK022644 TSC_hg19_v1_chr16_-_90085865 NM_001042610	45304	-	TSC_hg19_v1_chr16_-_90086275 AK308737	45674	-	NM_145039|CENPBD1|92806|CENPB DNA-binding domains containing 1##BC045753|AFG3L1P|172|AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene##AK126911|AFG3L1P|172|AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene##AK056488|AFG3L1P|172|AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene##AK097044|AFG3L1P|172|AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene##AK091293|AFG3L1P|172|AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene##BC000700|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##NM_024043|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##AK090965|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##AK022644|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##NM_001042610|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1##AK308737|DBNDD1|79007|dysbindin (dystrobrevin binding protein 1) domain containing 1	0.9984	0.0	denovo_WM_7:13:0.494	denovo_WM_7:14:0.494
chr19	1895273	1895453	reg1006250.p2	5.317	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-9859	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-9892	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-9918	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	9989	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	10042	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	45800	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	0.941275	0.0	denovo_WM_7:-51:0.941
chr11	31419080	31419260	reg1000577.p2	5.316	+	TSC_hg19_v1_chr11_+_31391404 NM_181706 AK123087 AL833128 AK289665 BC036571 BC044931 BC063804	-27768	+	AY247970 AK126066 NM_181807	-27832	-	BX647348 NM_020869	-404938	-	AK311611 BC023595 TSC_hg19_v1_chr11_-_31531154 AK310496 AK057788 NM_144981	111974	-	AK000505 NM_019040 TSC_hg19_v1_chr11_+_31531319 AK304885 AL136677 DQ891468 DQ894651 BC012514 AB463022 AM393460 AM393857	112143	+	AK094249 TSC_hg19_v1_chr11_-_31825606	406430	-	NM_181706|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK123087|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AL833128|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK289665|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC036571|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC044931|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC063804|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AY247970|DCDC1|341019|doublecortin domain containing 1##NM_181807|DCDC1|341019|doublecortin domain containing 1##BX647348|DCDC5|100506627|doublecortin domain containing 5##NM_020869|DCDC5|100506627|doublecortin domain containing 5##AK311611|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC023595|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK310496|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK057788|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_144981|IMMP1L|196294|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK000505|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##NM_019040|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AK304885|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AL136677|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##DQ891468|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##DQ894651|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##BC012514|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AM393460|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AM393857|ELP4|26610|elongation protein 4 homolog (S. cerevisiae)##AK094249|PAX6|5080|paired box 6	0.0	0.0	
chr14	103207946	103208045	reg1007546.p2	5.316	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-148834	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-148997	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-231881	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	35824	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	35905	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	181003	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	1.010196	0.0	
chr16	68834213	68834391	reg1007486.p2	5.316	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-62991	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-63057	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-63083	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	43203	+	AK291400 NM_001199280	305164	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	305838	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	0.0	0.0	
chr11	35140505	35140644	reg1008669.p1	5.315	+	TSC_hg19_v1_chr11_+_34938187 BX648910 U82328 BC010389 AK312463 AK301384 AF001437 CU679691 Y13145	-202417	+	CU678963 AB590513 TSC_hg19_v1_chr11_-_34937923 BC017594 BC009077 AK302225 AK225249 AF132963 BC008440 AK292648 NM_015957	-202685	-	NM_001135024 NM_001166158 NM_003477	-202898	+	TSC_hg19_v1_chr11_+_35160385 AL832642 NM_000610 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001202555 NM_001202556 NM_001202557	19826	+	TSC_hg19_v1_chr11_+_35160717 AK297776 D28447 X66733 X55150 BC004372 BC052287 AY101193 BC067348 AY101192 M24915 X56794 U40373 S66400	20160	+	TSC_hg19_v1_chr11_+_35160821 M59040	20244	+	BX648910|PDHX|8050|pyruvate dehydrogenase complex, component X##U82328|PDHX|8050|pyruvate dehydrogenase complex, component X##BC010389|PDHX|8050|pyruvate dehydrogenase complex, component X##AK312463|PDHX|8050|pyruvate dehydrogenase complex, component X##AK301384|PDHX|8050|pyruvate dehydrogenase complex, component X##AF001437|PDHX|8050|pyruvate dehydrogenase complex, component X##Y13145|PDHX|8050|pyruvate dehydrogenase complex, component X##BC017594|APIP|51074|APAF1 interacting protein##BC009077|APIP|51074|APAF1 interacting protein##AK302225|APIP|51074|APAF1 interacting protein##AK225249|APIP|51074|APAF1 interacting protein##AF132963|APIP|51074|APAF1 interacting protein##BC008440|APIP|51074|APAF1 interacting protein##AK292648|APIP|51074|APAF1 interacting protein##NM_015957|APIP|51074|APAF1 interacting protein##NM_001135024|PDHX|8050|pyruvate dehydrogenase complex, component X##NM_001166158|PDHX|8050|pyruvate dehydrogenase complex, component X##NM_003477|PDHX|8050|pyruvate dehydrogenase complex, component X##AL832642|CD44|960|CD44 molecule (Indian blood group)##NM_000610|CD44|960|CD44 molecule (Indian blood group)##NM_001001389|CD44|960|CD44 molecule (Indian blood group)##NM_001001390|CD44|960|CD44 molecule (Indian blood group)##NM_001001391|CD44|960|CD44 molecule (Indian blood group)##NM_001001392|CD44|960|CD44 molecule (Indian blood group)##NM_001202555|CD44|960|CD44 molecule (Indian blood group)##NM_001202556|CD44|960|CD44 molecule (Indian blood group)##NM_001202557|CD44|960|CD44 molecule (Indian blood group)##AK297776|CD44|960|CD44 molecule (Indian blood group)##D28447|CD44|960|CD44 molecule (Indian blood group)##X66733|CD44|960|CD44 molecule (Indian blood group)##X55150|CD44|960|CD44 molecule (Indian blood group)##BC004372|CD44|960|CD44 molecule (Indian blood group)##BC052287|CD44|960|CD44 molecule (Indian blood group)##AY101193|CD44|960|CD44 molecule (Indian blood group)##BC067348|CD44|960|CD44 molecule (Indian blood group)##AY101192|CD44|960|CD44 molecule (Indian blood group)##M24915|CD44|960|CD44 molecule (Indian blood group)##X56794|CD44|960|CD44 molecule (Indian blood group)##U40373|CD44|960|CD44 molecule (Indian blood group)##S66400|CD44|960|CD44 molecule (Indian blood group)##M59040|CD44|960|CD44 molecule (Indian blood group)	0.0	0.0	
chr12	111057530	111057710	reg1001955.p1	5.315	+	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-5695	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-36494	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-36550	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	69338	-	AK293543 NM_001040107	69979	-	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	122926	-	AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	0.0	0.0	
chr17	5211399	5211515	reg1009098.p2	5.315	+	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	-25791	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-73356	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-116077	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	111468	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	111503	+	TSC_hg19_v1_chr17_-_5322983 NM_002532	111563	-	NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein##NM_002532|NUP88|4927|nucleoporin 88kDa	0.997639	0.0	denovo_WM_7:74:0.817
chr1	90159998	90160151	reg1009855.p1	5.315	+	TSC_hg19_v1_chr1_+_90098707 AK127881 AB081509 BC103929 BC113973	-61310	+	NM_032270 TSC_hg19_v1_chr1_+_90098643	-61429	+	TSC_hg19_v1_chr1_+_90098630 BC036122	-61441	+	TSC_hg19_v1_chr1_+_90286586 NM_001134479	126453	+	TSC_hg19_v1_chr1_+_90286603 AK092238 AX747423	126525	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	127384	+	AK127881|LRRC8C|84230|leucine rich repeat containing 8 family, member C##AB081509|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC103929|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC113973|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_032270|LRRC8C|84230|leucine rich repeat containing 8 family, member C##BC036122|LRRC8C|84230|leucine rich repeat containing 8 family, member C##NM_001134479|LRRC8D|55144|leucine rich repeat containing 8 family, member D##AK092238|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D	0.994991	0.0	
chr9	114767656	114767787	reg1010334.p1	5.315	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-108254	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-108607	+	AL833535 NM_173521	-221946	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	169799	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	327566	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	328128	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	1.796854	0.0	denovo_WM_7:-7:0.492	denovo_WM_7:-22:0.532
chr15	70021641	70021791	reg1009567.p2	5.314	+	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	-276495	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-314354	-	TSC_hg19_v1_chr15_+_69706687 AK310402 EU176620	-314970	+	BC015421 TSC_hg19_v1_chr15_-_70341948	320193	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	368511	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	368527	-	NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##AK056793|LOC145694|145694|uncharacterized LOC145694##AK310402|KIF23|9493|kinesin family member 23##EU176620|KIF23|9493|kinesin family member 23##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	0.885423	0.95623	denovo_WM_7:25:0.383	CTCF.p2:-28:0.956
chr3	128508081	128508229	reg1010344.p1	5.314	+	TSC_hg19_v1_chr3_+_128445036 AK298344	-63118	+	TSC_hg19_v1_chr3_+_128445035 AK000826 AK308934 BC008721	-63121	+	TSC_hg19_v1_chr3_+_128445026 AK290721	-63127	+	TSC_hg19_v1_chr3_+_128532268 AF119891	24180	+	NM_014049 TSC_hg19_v1_chr3_+_128598429	90226	+	TSC_hg19_v1_chr3_+_128598453 BC007970	90293	+	AK298344|RAB7A|7879|RAB7A, member RAS oncogene family##AK000826|RAB7A|7879|RAB7A, member RAS oncogene family##AK308934|RAB7A|7879|RAB7A, member RAS oncogene family##BC008721|RAB7A|7879|RAB7A, member RAS oncogene family##AK290721|RAB7A|7879|RAB7A, member RAS oncogene family##NM_014049|ACAD9|28976|acyl-CoA dehydrogenase family, member 9##BC007970|ACAD9|28976|acyl-CoA dehydrogenase family, member 9	0.998892	0.0	
chr17	6325449	6325545	reg1007988.p1	5.313	+	TSC_hg19_v1_chr17_+_5974408 BC009975	-351080	+	TSC_hg19_v1_chr17_+_5973700 AL833730 NM_015253	-351690	+	AK309645 TSC_hg19_v1_chr17_+_5972435 AK289603	-353067	+	DQ892260 DQ895462 AB593054 BC007994 BC012055 AF038437 AB593047 AB593042 AB593043 AB593050 AB593052 AK314558 AB593051 AK023970 AB593048 BX537907 AB593044 AB593045 AB593046 AB593049 AJ633677 AJ633678 AJ830742 AJ830743 AB593053 AB593055 BX647279 AF525970 NM_001033054 NM_001033055 NM_014336 DQ426860	13006	-	TSC_hg19_v1_chr17_+_6347774 NM_001195228 NM_019013 BC005004 AK225613 AK001353 AK225702 BC013966 AK001018	22266	+	TSC_hg19_v1_chr17_-_6459873 BC035799 BC128583 BC128584 AF334586 NM_001165966 NM_031220	134333	-	BC009975|WSCD1|23302|WSC domain containing 1##AL833730|WSCD1|23302|WSC domain containing 1##NM_015253|WSCD1|23302|WSC domain containing 1##AK309645|WSCD1|23302|WSC domain containing 1##AK289603|WSCD1|23302|WSC domain containing 1##DQ892260|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##DQ895462|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593054|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BC007994|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BC012055|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AF038437|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593047|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593042|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593043|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593050|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593052|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AK314558|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593051|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AK023970|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593048|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BX537907|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593044|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593045|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593046|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593049|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ633677|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ633678|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ830742|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ830743|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593053|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593055|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BX647279|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AF525970|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_001033054|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_001033055|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_014336|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_001195228|FAM64A|54478|family with sequence similarity 64, member A##NM_019013|FAM64A|54478|family with sequence similarity 64, member A##BC005004|FAM64A|54478|family with sequence similarity 64, member A##AK225613|FAM64A|54478|family with sequence similarity 64, member A##AK001353|FAM64A|54478|family with sequence similarity 64, member A##AK225702|FAM64A|54478|family with sequence similarity 64, member A##BC013966|FAM64A|54478|family with sequence similarity 64, member A##AK001018|FAM64A|54478|family with sequence similarity 64, member A##BC035799|PITPNM3|83394|PITPNM family member 3##BC128583|PITPNM3|83394|PITPNM family member 3##BC128584|PITPNM3|83394|PITPNM family member 3##AF334586|PITPNM3|83394|PITPNM family member 3##NM_001165966|PITPNM3|83394|PITPNM family member 3##NM_031220|PITPNM3|83394|PITPNM family member 3	0.0	0.99949	CTCF.p2:21:0.999
chr22	26346302	26346399	reg1007047.p2	5.313	+	TSC_hg19_v1_chr22_+_26138168 AY077700	-208166	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	-208230	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	-385404	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	219087	+	TSC_hg19_v1_chr22_+_26565455 AB023144 BC126115 BC143851 BC143854	219147	+	CR456574 CU013173 CU013461 AB041736 TSC_hg19_v1_chr22_+_26565704	219313	+	AY077700|MYO18B|84700|myosin XVIIIB##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB##BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB023144|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC126115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143851|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143854|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CR456574|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013173|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013461|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB041736|SEZ6L|23544|seizure related 6 homolog (mouse)-like	0.892512	0.0	denovo_WM_7:-31:0.795
chr7	102085553	102085619	reg1001267.p1	5.313	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-11545	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-11609	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-48744	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	19647	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	19731	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	19822	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	0.0	0.0	
chr15	67131182	67131345	reg1009830.p1	5.312	+	NM_001142861 U59914	-130334	+	BC052569 BC012986 AF037469 AF043640 AM909653 TSC_hg19_v1_chr15_+_66995671	-135704	+	AF035528 TSC_hg19_v1_chr15_+_66994671 NM_005585	-136589	+	TSC_hg19_v1_chr15_+_67358179 AK290881	226912	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	227138	+	NM_001145102 AK316017	286860	+	NM_001142861|SMAD6|4091|SMAD family member 6##U59914|SMAD6|4091|SMAD family member 6##BC052569|SMAD6|4091|SMAD family member 6##BC012986|SMAD6|4091|SMAD family member 6##AF037469|SMAD6|4091|SMAD family member 6##AF043640|SMAD6|4091|SMAD family member 6##AM909653|SMAD6|4091|SMAD family member 6##AF035528|SMAD6|4091|SMAD family member 6##NM_005585|SMAD6|4091|SMAD family member 6##AK290881|SMAD3|4088|SMAD family member 3##NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3	0.986355	0.031679	
chr17	28926727	28926821	reg1006389.p1	5.312	+	BC096718 BC098126 BC098273 NM_015594	-40191	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-122341	+	AK316409 NM_001199775 AK302878	-219259	+	TSC_hg19_v1_chr17_+_29058664 BC047718	131914	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	224901	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	224989	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	0.991749	0.0	denovo_WM_7:-5:0.331	denovo_WM_7:-6:0.331	denovo_WM_7:-7:0.331
chr4	87448373	87448553	reg1010839.p1	5.312	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-74140	-	NM_138980 NM_138982	-167089	-	BC022492 TSC_hg19_v1_chr4_-_87281197 BC035057	-167267	-	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	67010	+	AJ583502 BC107051 BC107052 EF437223 NM_197965	321878	-	BC016746 BC063410 NM_144645	365097	-	NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##NM_138980|MAPK10|5602|mitogen-activated protein kinase 10##NM_138982|MAPK10|5602|mitogen-activated protein kinase 10##BC022492|MAPK10|5602|mitogen-activated protein kinase 10##BC035057|MAPK10|5602|mitogen-activated protein kinase 10##AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36	1.758805	0.0	denovo_WM_7:9:0.309	denovo_WM_7:10:0.545	denovo_WM_7:24:0.310	denovo_WM_7:25:0.530
chr12	120612915	120613060	reg1008751.p1	5.311	+	TSC_hg19_v1_chr12_+_120554697 BC041995 AK130486	-58278	+	TSC_hg19_v1_chr12_-_120554632 NM_001167606 NM_006861	-58348	-	TSC_hg19_v1_chr12_-_120554558 AK300127	-58422	-	TSC_hg19_v1_chr12_-_120632504 AB587307 AK297271 BC153881 D86973 NM_006836	19501	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	25914	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	25923	-	NM_001167606|RAB35|11021|RAB35, member RAS oncogene family##NM_006861|RAB35|11021|RAB35, member RAS oncogene family##AK300127|RAB35|11021|RAB35, member RAS oncogene family##AK297271|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC153881|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##D86973|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##NM_006836|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0	0.992236	0.0	
chr12	48298271	48298425	reg1007914.p2	5.311	+	AB489177 AY302468 TSC_hg19_v1_chr12_-_48213687 AY321367 BC064840 AK303481 AK299292 AK225910 NM_001098416 NM_015401	-84684	-	TSC_hg19_v1_chr12_+_48167020 NM_017842 AK000496 BC065033 BC026344 AK294075 CU688010 BC011823	-131314	+	AK092448 NM_001098531	-145474	-	TSC_hg19_v1_chr12_-_48298778 J03258 BC060832 BC033465 AK225844 AK299446 AK312267 NM_000376 NM_001017535 NM_001017536	453	-	TSC_hg19_v1_chr12_+_48357345 NM_001143841 NM_001143842 NM_001143843 NM_024056	58990	+	TSC_hg19_v1_chr12_+_48357387 AK310035 AK313698 AK299154 BC107792	59072	+	AY302468|HDAC7|51564|histone deacetylase 7##AY321367|HDAC7|51564|histone deacetylase 7##BC064840|HDAC7|51564|histone deacetylase 7##AK303481|HDAC7|51564|histone deacetylase 7##AK299292|HDAC7|51564|histone deacetylase 7##AK225910|HDAC7|51564|histone deacetylase 7##NM_001098416|HDAC7|51564|histone deacetylase 7##NM_015401|HDAC7|51564|histone deacetylase 7##NM_017842|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##AK000496|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##BC065033|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##BC026344|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##AK294075|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##BC011823|SLC48A1|55652|solute carrier family 48 (heme transporter), member 1##AK092448|RAPGEF3|10411|Rap guanine nucleotide exchange factor (GEF) 3##NM_001098531|RAPGEF3|10411|Rap guanine nucleotide exchange factor (GEF) 3##J03258|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##BC060832|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##BC033465|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##AK225844|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##AK299446|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##AK312267|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_000376|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_001017535|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_001017536|VDR|7421|vitamin D (1,25- dihydroxyvitamin D3) receptor##NM_001143841|TMEM106C|79022|transmembrane protein 106C##NM_001143842|TMEM106C|79022|transmembrane protein 106C##NM_001143843|TMEM106C|79022|transmembrane protein 106C##NM_024056|TMEM106C|79022|transmembrane protein 106C##AK310035|TMEM106C|79022|transmembrane protein 106C##AK313698|TMEM106C|79022|transmembrane protein 106C##AK299154|TMEM106C|79022|transmembrane protein 106C##BC107792|TMEM106C|79022|transmembrane protein 106C	1.469518	0.0	denovo_WM_7:-84:0.239	denovo_WM_7:-85:0.226	denovo_WM_7:-100:0.298
chr13	48732619	48732748	reg1010351.p2	5.311	+	TSC_hg19_v1_chr13_-_48669241 AK001934 AK222713 NM_014166 AK301835 BC005189	-63414	-	AK223017 TSC_hg19_v1_chr13_-_48669236 AF161475	-63449	-	AF230381 AF300618 CR457276 CR541830 DQ893076 DQ896333 TSC_hg19_v1_chr13_-_48669222	-63462	-	TSC_hg19_v1_chr13_+_48807293 NM_021999 BC018053 AF092128 AF136973	74595	+	TSC_hg19_v1_chr13_+_48807341 AF152462 AF246221 BC016148 AK000503 AK027411 AK130048 BC000554 AF086918	74661	+	AB527639 DQ890591 DQ893759 CU674270 BT006863 TSC_hg19_v1_chr13_+_48807572	74850	+	AK001934|MED4|29079|mediator complex subunit 4##AK222713|MED4|29079|mediator complex subunit 4##NM_014166|MED4|29079|mediator complex subunit 4##AK301835|MED4|29079|mediator complex subunit 4##BC005189|MED4|29079|mediator complex subunit 4##AK223017|MED4|29079|mediator complex subunit 4##AF161475|MED4|29079|mediator complex subunit 4##AF230381|MED4|29079|mediator complex subunit 4##AF300618|MED4|29079|mediator complex subunit 4##CR457276|MED4|29079|mediator complex subunit 4##CR541830|MED4|29079|mediator complex subunit 4##DQ893076|MED4|29079|mediator complex subunit 4##DQ896333|MED4|29079|mediator complex subunit 4##NM_021999|ITM2B|9445|integral membrane protein 2B##BC018053|ITM2B|9445|integral membrane protein 2B##AF092128|ITM2B|9445|integral membrane protein 2B##AF136973|ITM2B|9445|integral membrane protein 2B##AF152462|ITM2B|9445|integral membrane protein 2B##AF246221|ITM2B|9445|integral membrane protein 2B##BC016148|ITM2B|9445|integral membrane protein 2B##AK000503|ITM2B|9445|integral membrane protein 2B##AK027411|ITM2B|9445|integral membrane protein 2B##AK130048|ITM2B|9445|integral membrane protein 2B##BC000554|ITM2B|9445|integral membrane protein 2B##AF086918|ITM2B|9445|integral membrane protein 2B##DQ890591|ITM2B|9445|integral membrane protein 2B##DQ893759|ITM2B|9445|integral membrane protein 2B##BT006863|ITM2B|9445|integral membrane protein 2B	0.998327	0.0	denovo_WM_7:52:0.457	denovo_WM_7:53:0.457
chr14	22989845	22989982	reg1009122.p2	5.311	+	X58763 TSC_hg19_v1_chr14_+_22989364	-564	+	AB463964 NM_001001912 AY726598	-856591	+	NM_001005466 AB529274 BC137371 BC137382	-886867	-	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	68173	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	68221	-	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	77276	+	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4	0.0	0.0	
chr2	63271067	63271212	reg1006253.p2	5.311	+	BC029477 NM_001142614	-337109	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	-338173	+	AK292545 NM_001142615	-370154	+	NM_001199770	6052	+	NM_014562 TSC_hg19_v1_chr2_+_63277964 AK095680 AK297308 BC007621	6826	+	TSC_hg19_v1_chr2_-_63815560 AK310290	544401	-	BC029477|EHBP1|23301|EH domain binding protein 1##NM_001142614|EHBP1|23301|EH domain binding protein 1##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##NM_001199770|OTX1|5013|orthodenticle homeobox 1##NM_014562|OTX1|5013|orthodenticle homeobox 1##AK095680|OTX1|5013|orthodenticle homeobox 1##AK297308|OTX1|5013|orthodenticle homeobox 1##BC007621|OTX1|5013|orthodenticle homeobox 1##AK310290|WDPCP|51057|WD repeat containing planar cell polarity effector	2.989964	0.0	denovo_WM_7:-39:0.302	denovo_WM_7:-40:0.229
chr4	71603256	71603409	reg1005138.p2	5.311	+	TSC_hg19_v1_chr4_+_71587713 NM_001037442 NM_014961 BC051716 BC053837 BC098433 AB020678 BC071988	-15612	+	BC030809 TSC_hg19_v1_chr4_-_71571018	-32334	-	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	-32513	+	AK094806 NM_001098477	101871	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	102245	-	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	102305	-	NM_001037442|RUFY3|22902|RUN and FYVE domain containing 3##NM_014961|RUFY3|22902|RUN and FYVE domain containing 3##BC051716|RUFY3|22902|RUN and FYVE domain containing 3##BC053837|RUFY3|22902|RUN and FYVE domain containing 3##BC098433|RUFY3|22902|RUN and FYVE domain containing 3##AB020678|RUFY3|22902|RUN and FYVE domain containing 3##BC071988|RUFY3|22902|RUN and FYVE domain containing 3##BC030809|LOC641510|641510|uncharacterized LOC641510##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1	0.990736	0.0	denovo_WM_7:69:0.237	denovo_WM_7:70:0.237	denovo_WM_7:71:0.237	denovo_WM_7:72:0.237
chr7	155474478	155474629	reg1009022.p1	5.311	+	TSC_hg19_v1_chr7_+_155437354 AK307515	-37185	+	TSC_hg19_v1_chr7_+_155437182 NM_053043	-37345	+	TSC_hg19_v1_chr7_+_155437147 BC011923	-37402	+	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	127245	-	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	130337	-	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	958678	-	AK307515|RBM33|155435|RNA binding motif protein 33##NM_053043|RBM33|155435|RNA binding motif protein 33##BC011923|RBM33|155435|RNA binding motif protein 33##AY927450|SHH|6469|sonic hedgehog##L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13	0.998013	0.0	denovo_WM_7:72:0.587	denovo_WM_7:73:0.373
chr15	91388575	91388667	reg1004634.p2	5.310	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	-128007	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-315425	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-457082	+	NM_002569 X17094	23263	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	39080	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	39652	+	BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene	0.0	0.0	
chr17	75184400	75184580	reg1009256.p1	5.310	+	AK293206 NM_001144001	-3196	+	TSC_hg19_v1_chr17_+_75137104 AK290913 BC142979 BC136523 BC136525	-47355	+	TSC_hg19_v1_chr17_+_75137073 NM_001039573 NM_001143998 NM_001143999 NM_003003 AB208811 D67029 BX537448	-47456	+	NM_001113491 AF189713 TSC_hg19_v1_chr17_+_75277583 AJ312323 AK300270 AK300268 BC054004	93052	+	AK290368 NM_001113492 TSC_hg19_v1_chr17_+_75283980	99489	+	TSC_hg19_v1_chr17_+_75315629 AJ312321 NM_006640	131120	+	AK293206|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001144001|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##AK290913|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BC142979|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BC136523|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BC136525|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001039573|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001143998|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001143999|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_003003|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##AB208811|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##D67029|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BX537448|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001113491|SEPT9|10801|septin 9##AF189713|SEPT9|10801|septin 9##AJ312323|SEPT9|10801|septin 9##AK300270|SEPT9|10801|septin 9##AK300268|SEPT9|10801|septin 9##BC054004|SEPT9|10801|septin 9##AK290368|SEPT9|10801|septin 9##NM_001113492|SEPT9|10801|septin 9##AJ312321|SEPT9|10801|septin 9##NM_006640|SEPT9|10801|septin 9	1.008913	0.0	denovo_WM_7:11:0.528	denovo_WM_7:12:0.471
chr19	54704474	54704654	reg1006062.p2	5.310	+	NM_001077446 TSC_hg19_v1_chr19_+_54695138 BC020805 DQ893336 DQ896652	-9405	+	NM_024075 AK300054 TSC_hg19_v1_chr19_+_54694196 BC000944 AK054944 AK226013 AK025929 AK225385	-10403	+	TSC_hg19_v1_chr19_-_54693534 BC006309 AK055908 NM_001146056 NM_001146082 NM_001146083 NM_024298	-10940	-	TSC_hg19_v1_chr19_+_54704724 AB055775 AK095055 NM_001013 BC068055 BC050660 BC007410 BC007434 BC071940 BC007857 BC071941	138	+	AK290917 NM_001081450 NM_006864	22378	-	AF000575 EU814627 EU814628 AF009632 AF009633 AF009634 AF009635 AF009636 AF009637 AF009638 AF009639 AF009640 AF009641 AF009642 AF009643 AF009644 AF031553 AF031554 AF031555 AF031556 BC028153 AB463830 BC041708 BC104993 BC112198 EU915603 EU915604 EU915605 U91928 AK223265 AF025533 NM_024318	42097	-	NM_001077446|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##BC020805|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##DQ893336|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##DQ896652|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##NM_024075|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK300054|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##BC000944|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK054944|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK226013|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK025929|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK225385|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##BC006309|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##AK055908|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_001146056|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_001146082|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_001146083|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_024298|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##AB055775|RPS9|6203|ribosomal protein S9##AK095055|RPS9|6203|ribosomal protein S9##NM_001013|RPS9|6203|ribosomal protein S9##BC068055|RPS9|6203|ribosomal protein S9##BC050660|RPS9|6203|ribosomal protein S9##BC007410|RPS9|6203|ribosomal protein S9##BC007434|RPS9|6203|ribosomal protein S9##BC071940|RPS9|6203|ribosomal protein S9##BC007857|RPS9|6203|ribosomal protein S9##BC071941|RPS9|6203|ribosomal protein S9##AK290917|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##NM_001081450|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##NM_006864|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF000575|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU814627|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU814628|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009632|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009633|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009634|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009635|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009636|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009637|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009638|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009639|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009640|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009641|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009642|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009643|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009644|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031553|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031554|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031555|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031556|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##BC028153|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##BC041708|LILRA6|79168|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6##BC104993|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##BC112198|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU915603|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU915604|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU915605|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##U91928|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AK223265|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF025533|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##NM_024318|LILRA6|79168|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	0.864042	0.0	denovo_WM_7:-77:0.808
chr7	155448181	155448312	reg1007646.p2	5.310	+	TSC_hg19_v1_chr7_+_155437354 AK307515	-10878	+	TSC_hg19_v1_chr7_+_155437182 NM_053043	-11038	+	TSC_hg19_v1_chr7_+_155437147 BC011923	-11095	+	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	153552	-	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	156644	-	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	984985	-	AK307515|RBM33|155435|RNA binding motif protein 33##NM_053043|RBM33|155435|RNA binding motif protein 33##BC011923|RBM33|155435|RNA binding motif protein 33##AY927450|SHH|6469|sonic hedgehog##L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13	1.01515	0.0	
chr19	10530260	10530440	reg1001057.p2	5.309	+	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	-2847	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-16094	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-16137	-	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	880	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	11077	+	AF073745 NM_001111309	12760	+	AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AF073745|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111309|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.0	0.0	
chr20	47770287	47770422	reg1005899.p1	5.309	+	TSC_hg19_v1_chr20_+_47662875 AF053640	-107466	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	-107528	+	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	-232036	+	TSC_hg19_v1_chr20_-_47804876 AK292859 BC001893 BC010169 AY529074 AK291487 BC007532 AK057739 AK025519 BC095397 AL136601	34432	-	AF061938 AF061939 AF061940 AF061941 AY546099 NM_001037328 NM_004602 NM_017452 NM_017453 NM_017454 TSC_hg19_v1_chr20_-_47804905	34559	-	NM_017895 BC126287 BC130275 BC144125 BC104480 HQ258508 AY044431 AL832131 EU718675 TSC_hg19_v1_chr20_+_47835952 AK300135	65538	+	AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AK292859|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC001893|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC010169|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY529074|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK291487|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC007532|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK057739|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK025519|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC095397|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AL136601|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061938|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061939|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061940|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061941|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY546099|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_001037328|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_004602|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017452|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017453|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017454|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017895|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC126287|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC130275|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC144125|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC104480|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258508|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AY044431|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AL832131|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##EU718675|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK300135|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	3.928098	0.0	denovo_WM_7:-59:0.698	denovo_WM_7:-81:0.427	denovo_WM_7:-82:0.285	denovo_WM_7:-97:0.318	denovo_WM_7:-98:0.461
chr10	71987366	71987534	reg1007563.p1	5.308	+	TSC_hg19_v1_chr10_-_71930260 AK298591 AK312469 BC003658 AF274026 AF087897 AF217959 AF261717 AY008268 AL136724 NM_001142648 NM_020150	-57171	-	TSC_hg19_v1_chr10_-_71906457 BC047424 NM_001040273 NM_173555	-80970	-	TSC_hg19_v1_chr10_-_71906446 BC030242 AK074968 BC111501 BC042629	-81022	-	AF108211 AB590125 AF217186 DQ893597 AB026723 TSC_hg19_v1_chr10_-_71993148 BC107882 AF154065 BC105034 BC105036 AF092439 AF119665 BC001022 BC061581 AK058193 NM_021129	5703	-	NM_022146	55999	-	TSC_hg19_v1_chr10_-_72083680 AL122117	96248	-	AK298591|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AK312469|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC003658|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF274026|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF087897|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF217959|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF261717|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AY008268|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AL136724|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_001142648|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_020150|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC047424|TYSND1|219743|trypsin domain containing 1##NM_001040273|TYSND1|219743|trypsin domain containing 1##NM_173555|TYSND1|219743|trypsin domain containing 1##BC030242|TYSND1|219743|trypsin domain containing 1##AK074968|TYSND1|219743|trypsin domain containing 1##BC111501|TYSND1|219743|trypsin domain containing 1##BC042629|TYSND1|219743|trypsin domain containing 1##AF108211|PPA1|5464|pyrophosphatase (inorganic) 1##AF217186|PPA1|5464|pyrophosphatase (inorganic) 1##DQ893597|PPA1|5464|pyrophosphatase (inorganic) 1##AB026723|PPA1|5464|pyrophosphatase (inorganic) 1##BC107882|PPA1|5464|pyrophosphatase (inorganic) 1##AF154065|PPA1|5464|pyrophosphatase (inorganic) 1##BC105034|PPA1|5464|pyrophosphatase (inorganic) 1##BC105036|PPA1|5464|pyrophosphatase (inorganic) 1##AF092439|PPA1|5464|pyrophosphatase (inorganic) 1##AF119665|PPA1|5464|pyrophosphatase (inorganic) 1##BC001022|PPA1|5464|pyrophosphatase (inorganic) 1##BC061581|PPA1|5464|pyrophosphatase (inorganic) 1##AK058193|PPA1|5464|pyrophosphatase (inorganic) 1##NM_021129|PPA1|5464|pyrophosphatase (inorganic) 1##NM_022146|NPFFR1|64106|neuropeptide FF receptor 1##AL122117|LRRC20|55222|leucine rich repeat containing 20	0.999676	0.0	
chr1	111308761	111308889	reg1006099.p1	5.308	+	TSC_hg19_v1_chr1_-_111217626 BC035059 NM_002232	-91185	-	TSC_hg19_v1_chr1_-_111217553 AK314009	-91281	-	CU690040 DQ891663 DQ894850 M85217 BC064595 TSC_hg19_v1_chr1_-_111217406 L23499	-91473	-	NM_001040033 BC035456	105004	+	NM_000560 TSC_hg19_v1_chr1_+_111415769 AK313582 AK298723	106930	+	BC040693 TSC_hg19_v1_chr1_+_111415791 M37033 M60871	106977	+	BC035059|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##NM_002232|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##DQ891663|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##DQ894850|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##M85217|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##BC064595|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##L23499|KCNA3|3738|potassium voltage-gated channel, shaker-related subfamily, member 3##NM_001040033|CD53|963|CD53 molecule##BC035456|CD53|963|CD53 molecule##NM_000560|CD53|963|CD53 molecule##AK313582|CD53|963|CD53 molecule##AK298723|CD53|963|CD53 molecule##BC040693|CD53|963|CD53 molecule##M37033|CD53|963|CD53 molecule##M60871|CD53|963|CD53 molecule	0.974666	0.324948	CTCF.p2:36:0.286	denovo_WM_7:-46:0.964
chr20	5639608	5639762	reg1007627.p2	5.308	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-48098	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-344649	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-531990	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	91381	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	252441	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	291438	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.988421	0.0	denovo_WM_7:-94:0.819
chr8	126232815	126232973	reg1007715.p1	5.308	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-128797	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-128837	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-128872	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	209685	+	TSC_hg19_v1_chr8_-_126963395 BX648371	730519	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1337661	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.995126	0.0	denovo_WM_7:-1:0.526	denovo_WM_7:-2:0.469
chr1	150206982	150207118	reg1002524.p2	5.307	+	AK095228 NM_001136479	-25	-	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-84612	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-84746	+	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	1217	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	1401	-	TSC_hg19_v1_chr1_-_150208505 AL832674 NM_001136478 NM_030920	1442	-	AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832674|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136478|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_030920|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.0	0.0	
chr1	16171669	16171824	reg1001517.p3	5.307	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-9390	-	BC012991 TSC_hg19_v1_chr1_-_16161389	-10412	-	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-37554	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	2633	+	TSC_hg19_v1_chr1_+_16259065 BC172907	87365	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	130724	-	AK094772|FLJ37453|729614|uncharacterized LOC729614##NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17	0.997754	0.0	denovo_WM_7:26:0.665
chr17	73351824	73351974	reg1009392.p2	5.307	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-66370	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-66427	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-84585	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	37878	-	AK091010 TSC_hg19_v1_chr17_-_73401721	49745	-	TSC_hg19_v1_chr17_-_73401738 BC000631	49835	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	1.358937	0.0	denovo_WM_7:-1:0.362	denovo_WM_7:13:0.386
chr6	158236207	158236317	reg1010384.p1	5.307	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-433723	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-491045	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-491678	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	8027	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	8112	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	166625	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.705145	0.0	denovo_WM_7:-4:0.594
chr6	15950569	15950677	reg1008839.p1	5.307	+	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	-287333	-	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	-287446	-	TSC_hg19_v1_chr6_+_15249113 AK303610	-701510	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	178679	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	178814	+	TSC_hg19_v1_chr6_+_16143281 AK026739	192687	+	NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein	0.999899	0.0	
chr6	16755907	16756063	reg1008960.p2	5.307	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-517134	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-612675	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-626548	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	5712	-	NM_001190766	346503	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	525869	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.999596	0.06789	denovo_WM_7:-27:0.720
chr6	36163657	36163804	reg1006074.p1	5.307	+	NM_002754 TSC_hg19_v1_chr6_+_36098292 AK308018 BC085196 AF004709 BC000433 BC001641 BC004428 Y10488 AF092535 U93232 AF100546 AB451221 AB451344 AB463892 BT007221 CR536490 CR541687 DQ891372 DQ894551 EU832156 EU832250 AK222922	-65416	+	TSC_hg19_v1_chr6_+_35995587 BC000092 BC031574 L35264	-168074	+	AK303414 TSC_hg19_v1_chr6_+_35995584	-168147	+	TSC_hg19_v1_chr6_+_36164569 AB033112 NM_015695	830	+	TSC_hg19_v1_chr6_-_36164979 BC042825	1254	-	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	47231	+	NM_002754|MAPK13|5603|mitogen-activated protein kinase 13##AK308018|MAPK13|5603|mitogen-activated protein kinase 13##BC085196|MAPK13|5603|mitogen-activated protein kinase 13##AF004709|MAPK13|5603|mitogen-activated protein kinase 13##BC000433|MAPK13|5603|mitogen-activated protein kinase 13##BC001641|MAPK13|5603|mitogen-activated protein kinase 13##BC004428|MAPK13|5603|mitogen-activated protein kinase 13##Y10488|MAPK13|5603|mitogen-activated protein kinase 13##AF092535|MAPK13|5603|mitogen-activated protein kinase 13##U93232|MAPK13|5603|mitogen-activated protein kinase 13##AF100546|MAPK13|5603|mitogen-activated protein kinase 13##AB451221|MAPK13|5603|mitogen-activated protein kinase 13##AB451344|MAPK13|5603|mitogen-activated protein kinase 13##BT007221|MAPK13|5603|mitogen-activated protein kinase 13##CR536490|MAPK13|5603|mitogen-activated protein kinase 13##CR541687|MAPK13|5603|mitogen-activated protein kinase 13##DQ891372|MAPK13|5603|mitogen-activated protein kinase 13##DQ894551|MAPK13|5603|mitogen-activated protein kinase 13##EU832156|MAPK13|5603|mitogen-activated protein kinase 13##EU832250|MAPK13|5603|mitogen-activated protein kinase 13##AK222922|MAPK13|5603|mitogen-activated protein kinase 13##BC000092|MAPK14|1432|mitogen-activated protein kinase 14##BC031574|MAPK14|1432|mitogen-activated protein kinase 14##L35264|MAPK14|1432|mitogen-activated protein kinase 14##AK303414|MAPK14|1432|mitogen-activated protein kinase 14##AB033112|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_015695|BRPF3|27154|bromodomain and PHD finger containing, 3##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1	0.994632	0.0	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239	denovo_WM_7:43:0.239	denovo_WM_7:44:0.239
chr6	9105020	9105086	reg1019217.p1	5.307	+	TSC_hg19_v1_chr6_+_8435870 BC040612	-669165	+	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	-669345	-	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-1002263	-	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	1307563	-	FJ794945 M61156 M36711 X52611 TSC_hg19_v1_chr6_-_10415305	1310222	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	1310415	-	BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##FJ794945|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M61156|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M36711|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##X52611|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.0	0.0	
chr8	8714430	8714610	reg1010054.p1	5.307	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	-154822	+	AK122582 NM_001080826	-475298	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-538632	-	TSC_hg19_v1_chr8_-_8751060 NM_004225	36418	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	145845	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	145985	+	AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1	1.98352	0.0	denovo_WM_7:-6:0.680	denovo_WM_7:-7:0.246	denovo_WM_7:-21:0.640	denovo_WM_7:-22:0.282
chr10	76926129	76926276	reg1010312.p2	5.306	+	TSC_hg19_v1_chr10_+_76871413 BC080593 NM_001174156 NM_144660 AK057811	-54785	+	BC009778 AY040091 AK057012 AY674051 AK291897 AK300679 AK127886 NM_001007271 NM_001007272 NM_001007273 AK291891	-57288	-	AB027004 AB103375 NM_016364	-66955	-	NM_001184823	43709	+	NM_001184783 NM_003375	44097	+	TSC_hg19_v1_chr10_+_76970563 BC000165 BC072407 AK315919 AK296635	44352	+	BC080593|SAMD8|142891|sterile alpha motif domain containing 8##NM_001174156|SAMD8|142891|sterile alpha motif domain containing 8##NM_144660|SAMD8|142891|sterile alpha motif domain containing 8##AK057811|SAMD8|142891|sterile alpha motif domain containing 8##BC009778|DUSP13|51207|dual specificity phosphatase 13##AY040091|DUSP13|51207|dual specificity phosphatase 13##AK057012|DUSP13|51207|dual specificity phosphatase 13##AY674051|DUSP13|51207|dual specificity phosphatase 13##AK291897|DUSP13|51207|dual specificity phosphatase 13##AK300679|DUSP13|51207|dual specificity phosphatase 13##AK127886|DUSP13|51207|dual specificity phosphatase 13##NM_001007271|DUSP13|51207|dual specificity phosphatase 13##NM_001007272|DUSP13|51207|dual specificity phosphatase 13##NM_001007273|DUSP13|51207|dual specificity phosphatase 13##AK291891|DUSP13|51207|dual specificity phosphatase 13##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13##NM_001184823|VDAC2|7417|voltage-dependent anion channel 2##NM_001184783|VDAC2|7417|voltage-dependent anion channel 2##NM_003375|VDAC2|7417|voltage-dependent anion channel 2##BC000165|VDAC2|7417|voltage-dependent anion channel 2##BC072407|VDAC2|7417|voltage-dependent anion channel 2##AK315919|VDAC2|7417|voltage-dependent anion channel 2##AK296635|VDAC2|7417|voltage-dependent anion channel 2	0.997834	0.0	denovo_WM_7:-40:0.881
chr15	93451141	93451321	reg1008766.p1	5.306	+	AK295909 TSC_hg19_v1_chr15_+_93447798	-3471	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	-7651	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	-7745	+	AL390083 TSC_hg19_v1_chr15_-_93616347	165097	-	TSC_hg19_v1_chr15_-_93616364 AK074966 BC015886 NM_001166286	165142	-	AK309814 AK125204 NM_001166288 NM_001166289	165683	-	AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##AL390083|RGMA|56963|RGM domain family, member A##AK074966|RGMA|56963|RGM domain family, member A##BC015886|RGMA|56963|RGM domain family, member A##NM_001166286|RGMA|56963|RGM domain family, member A##AK309814|RGMA|56963|RGM domain family, member A##AK125204|RGMA|56963|RGM domain family, member A##NM_001166288|RGMA|56963|RGM domain family, member A##NM_001166289|RGMA|56963|RGM domain family, member A	0.997505	0.0	
chr5	43018987	43019142	reg1009893.p3	5.306	+	TSC_hg19_v1_chr5_-_42993436 AK056817	-25618	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-207073	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-262126	+	AB463523 BC067873 AY032883 NM_001014279	21232	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	101937	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	102550	+	AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131	1.871494	0.0	denovo_WM_7:-81:0.336	denovo_WM_7:-99:0.234
chr7	120507999	120508142	reg1011388.p1	5.306	+	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	-9910	-	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	-10050	-	AK307139 AB028967 NM_012281	-594366	+	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	82811	+	TSC_hg19_v1_chr7_+_120628742 NM_024913 AK289978 AL832619	120695	+	TSC_hg19_v1_chr7_+_120628867 AL832638	120826	+	BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3##NM_024913|C7orf58|79974|chromosome 7 open reading frame 58##AK289978|C7orf58|79974|chromosome 7 open reading frame 58##AL832619|C7orf58|79974|chromosome 7 open reading frame 58##AL832638|C7orf58|79974|chromosome 7 open reading frame 58	0.599933	0.0	denovo_WM_7:-44:0.282
chrY	1549766	1549877	reg1001502.p2	5.306	+	AK301844 NM_001173473	-27170	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-28020	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-88852	-	BC043610 GQ280263 NM_178129 AK126147	56217	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	110708	+	NM_004043 U11090	114526	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.861176	0.0	denovo_WM_7:-15:0.558	denovo_WM_7:-18:0.367	denovo_WM_7:-105:0.762
chr1	227072169	227072270	reg1008827.p1	5.305	+	TSC_hg19_v1_chr1_+_227058316 NM_000447 NM_012486 AK292299 AK301143	-13939	+	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	-145281	-	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	-335602	+	NM_020247 TSC_hg19_v1_chr1_+_227127955	55727	+	TSC_hg19_v1_chr1_+_227127991 BX648860 BC005171	55756	+	TSC_hg19_v1_chr1_+_227127998 AK074693 AK092784 AK126200 AK293571 AK297735 AX747728 AK090494 AK301012 AX746479	55776	+	NM_000447|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_012486|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK292299|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK301143|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B##AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##NM_020247|ADCK3|56997|aarF domain containing kinase 3##BX648860|ADCK3|56997|aarF domain containing kinase 3##BC005171|ADCK3|56997|aarF domain containing kinase 3##AK074693|ADCK3|56997|aarF domain containing kinase 3##AK092784|ADCK3|56997|aarF domain containing kinase 3##AK126200|ADCK3|56997|aarF domain containing kinase 3##AK293571|ADCK3|56997|aarF domain containing kinase 3##AK297735|ADCK3|56997|aarF domain containing kinase 3##AK090494|ADCK3|56997|aarF domain containing kinase 3##AK301012|ADCK3|56997|aarF domain containing kinase 3	0.99951	0.0	denovo_WM_7:28:0.425	denovo_WM_7:29:0.425
chr5	151164167	151164347	reg1010094.p1	5.305	+	TSC_hg19_v1_chr5_+_151151662 X78262	-12593	+	TSC_hg19_v1_chr5_+_151151516 U32519 BC108278	-12728	+	AK130003 AK222606 AK300098 BX647869 TSC_hg19_v1_chr5_+_151151514	-12743	+	AK312702 AK308539 AK226046 BC114947 BC114967 NM_000171 NM_001146040 X52009	140105	-	AF242874 AB041228 AF292402 CU677771 CU688334 DQ891777 DQ894961 AF272363 BC016938 BC067776 NM_020167	620494	-	NM_000827 NM_001114183 TSC_hg19_v1_chr5_+_152870105 AK289565 AK295827 AB209094 AK294011 M81886 X58633 BC111734 M64752 AB527859 AB590570	1706008	+	X78262|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##U32519|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##BC108278|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK130003|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK222606|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK300098|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##BX647869|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##AK312702|GLRA1|2741|glycine receptor, alpha 1##AK308539|GLRA1|2741|glycine receptor, alpha 1##AK226046|GLRA1|2741|glycine receptor, alpha 1##BC114947|GLRA1|2741|glycine receptor, alpha 1##BC114967|GLRA1|2741|glycine receptor, alpha 1##NM_000171|GLRA1|2741|glycine receptor, alpha 1##NM_001146040|GLRA1|2741|glycine receptor, alpha 1##X52009|GLRA1|2741|glycine receptor, alpha 1##AF242874|NMUR2|56923|neuromedin U receptor 2##AB041228|NMUR2|56923|neuromedin U receptor 2##AF292402|NMUR2|56923|neuromedin U receptor 2##DQ891777|NMUR2|56923|neuromedin U receptor 2##DQ894961|NMUR2|56923|neuromedin U receptor 2##AF272363|NMUR2|56923|neuromedin U receptor 2##BC016938|NMUR2|56923|neuromedin U receptor 2##BC067776|NMUR2|56923|neuromedin U receptor 2##NM_020167|NMUR2|56923|neuromedin U receptor 2##NM_000827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##NM_001114183|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK289565|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK295827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AB209094|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK294011|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M81886|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##X58633|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##BC111734|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M64752|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1	0.188152	0.0	
chr6	112525622	112525757	reg1009664.p2	5.305	+	NM_001033564 TSC_hg19_v1_chr6_+_112408818 BC044912 AL049461	-116908	+	AF201334 CU689114 CU692994 DQ891503 DQ894695 BC025405 TSC_hg19_v1_chr6_-_112408705 BC031101 AK026242 NM_016262	-116984	-	BC012028 NM_003880 BC035250 NM_198239 BC105940 BC105941 AY358349 AF100781 AY358350 AB075040	-150272	+	TSC_hg19_v1_chr6_-_112575345 AB384677 BT006690 CR407622	49659	-	S78569 TSC_hg19_v1_chr6_-_112575748 BC004241 AK304401 BC026237	50040	-	TSC_hg19_v1_chr6_-_112575770 AB210027 X91171 NM_001105206 NM_001105207 NM_001105208 NM_001105209 NM_002290	50116	-	NM_001033564|C6orf225|619208|chromosome 6 open reading frame 225##BC044912|C6orf225|619208|chromosome 6 open reading frame 225##AL049461|C6orf225|619208|chromosome 6 open reading frame 225##AF201334|TUBE1|51175|tubulin, epsilon 1##DQ891503|TUBE1|51175|tubulin, epsilon 1##DQ894695|TUBE1|51175|tubulin, epsilon 1##BC025405|TUBE1|51175|tubulin, epsilon 1##BC031101|TUBE1|51175|tubulin, epsilon 1##AK026242|TUBE1|51175|tubulin, epsilon 1##NM_016262|TUBE1|51175|tubulin, epsilon 1##BC012028|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_003880|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC035250|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_198239|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105940|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105941|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358349|WISP3|8838|WNT1 inducible signaling pathway protein 3##AF100781|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358350|WISP3|8838|WNT1 inducible signaling pathway protein 3##AB075040|WISP3|8838|WNT1 inducible signaling pathway protein 3##BT006690|LAMA4|3910|laminin, alpha 4##CR407622|LAMA4|3910|laminin, alpha 4##S78569|LAMA4|3910|laminin, alpha 4##BC004241|LAMA4|3910|laminin, alpha 4##AK304401|LAMA4|3910|laminin, alpha 4##BC026237|LAMA4|3910|laminin, alpha 4##AB210027|LAMA4|3910|laminin, alpha 4##X91171|LAMA4|3910|laminin, alpha 4##NM_001105206|LAMA4|3910|laminin, alpha 4##NM_001105207|LAMA4|3910|laminin, alpha 4##NM_001105208|LAMA4|3910|laminin, alpha 4##NM_001105209|LAMA4|3910|laminin, alpha 4##NM_002290|LAMA4|3910|laminin, alpha 4	0.992706	0.0	denovo_WM_7:-4:0.572	denovo_WM_7:-5:0.369
chr6	158185898	158186042	reg1000736.p2	5.305	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-383431	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-440753	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-441386	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	58319	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	58404	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	216917	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chrX	2794005	2794149	reg1010627.p1	5.305	+	TSC_hg19_v1_chrX_+_2746813 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 U94362 AK098046 AK292496 U94363 BC023152	-47175	+	AK304164 NM_001141919 NM_001141920 NM_175569 AF380356 AF534880 BC100764 BC100765 BC100766 BC100767 Z48517 Z48518 Z48519	-123863	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	-184765	+	AF160499 TSC_hg19_v1_chrX_-_2847338 AB590968 BC080179 BC020229	53254	-	TSC_hg19_v1_chrX_-_2847384 AK314479 AK021472 X83572 NM_001669	53311	-	BC130438 AK223199 TSC_hg19_v1_chrX_-_2882330 X83573 AK313093 AK301004 AK223183 NM_000047	88313	-	NM_001079855|GYG2|8908|glycogenin 2##NM_001184702|GYG2|8908|glycogenin 2##NM_001184703|GYG2|8908|glycogenin 2##NM_001184704|GYG2|8908|glycogenin 2##NM_003918|GYG2|8908|glycogenin 2##U94362|GYG2|8908|glycogenin 2##AK098046|GYG2|8908|glycogenin 2##AK292496|GYG2|8908|glycogenin 2##U94363|GYG2|8908|glycogenin 2##BC023152|GYG2|8908|glycogenin 2##AK304164|XG|7499|Xg blood group##NM_001141919|XG|7499|Xg blood group##NM_001141920|XG|7499|Xg blood group##NM_175569|XG|7499|Xg blood group##AF380356|XG|7499|Xg blood group##BC100764|XG|7499|Xg blood group##BC100765|XG|7499|Xg blood group##BC100766|XG|7499|Xg blood group##BC100767|XG|7499|Xg blood group##Z48517|XG|7499|Xg blood group##Z48518|XGPY2|100132596|Xg pseudogene, Y-linked 2##Z48519|XGPY2|100132596|Xg pseudogene, Y-linked 2##M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##AF160499|ARSD|414|arylsulfatase D##BC080179|ARSD|414|arylsulfatase D##BC020229|ARSD|414|arylsulfatase D##AK314479|ARSD|414|arylsulfatase D##AK021472|ARSD|414|arylsulfatase D##X83572|ARSD|414|arylsulfatase D##NM_001669|ARSD|414|arylsulfatase D##BC130438|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)##AK223199|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)##X83573|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)##AK313093|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)##AK301004|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)##AK223183|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)##NM_000047|ARSE|415|arylsulfatase E (chondrodysplasia punctata 1)	1.944745	0.0	denovo_WM_7:3:0.858	denovo_WM_7:18:0.859
chr12	123237200	123237310	reg1009674.p1	5.304	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	-22250	-	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-35877	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-49383	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	136	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	21846	+	TSC_hg19_v1_chr12_+_123319294 AK090537	82047	+	BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62##AK090537|HIP1R|9026|huntingtin interacting protein 1 related	0.0	0.041377	
chr15	44929162	44929342	reg1007598.p2	5.304	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-99870	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-99910	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-99940	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	26592	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	26628	-	BC036924 NM_001145112	39833	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	1.811013	0.0	denovo_WM_7:-86:0.299
chr7	51209258	51209362	reg1009678.p1	5.304	+	TSC_hg19_v1_chr7_-_50861150 NM_001001555	-348156	-	D86962 TSC_hg19_v1_chr7_-_50860699	-348621	-	AF000017 AB000731 AF001534 NM_001001549 NM_005311 U34355	-409277	-	AB385366 TSC_hg19_v1_chr7_-_51384416 BC136441 BC144099	175070	-	TSC_hg19_v1_chr7_-_51384501 BC094695 AB014533 BC150263 AK309254 BC111496 NM_015198	175176	-	NM_182595	1894038	+	NM_001001555|GRB10|2887|growth factor receptor-bound protein 10##D86962|GRB10|2887|growth factor receptor-bound protein 10##AF000017|GRB10|2887|growth factor receptor-bound protein 10##AB000731|GRB10|2887|growth factor receptor-bound protein 10##AF001534|GRB10|2887|growth factor receptor-bound protein 10##NM_001001549|GRB10|2887|growth factor receptor-bound protein 10##NM_005311|GRB10|2887|growth factor receptor-bound protein 10##U34355|GRB10|2887|growth factor receptor-bound protein 10##BC136441|COBL|23242|cordon-bleu homolog (mouse)##BC144099|COBL|23242|cordon-bleu homolog (mouse)##BC094695|COBL|23242|cordon-bleu homolog (mouse)##AB014533|COBL|23242|cordon-bleu homolog (mouse)##BC150263|COBL|23242|cordon-bleu homolog (mouse)##AK309254|COBL|23242|cordon-bleu homolog (mouse)##BC111496|COBL|23242|cordon-bleu homolog (mouse)##NM_015198|COBL|23242|cordon-bleu homolog (mouse)##NM_182595|POM121L12|285877|POM121 membrane glycoprotein-like 12	0.99951	0.050484	denovo_WM_7:28:0.425	denovo_WM_7:29:0.425
chr1	161309306	161309420	reg1007268.p1	5.303	+	NM_001035511 NM_001035512 NM_001035513 NM_003001 TSC_hg19_v1_chr1_+_161284170 AK131051 AK293687 AK294305 BC020808 BC066329 U57877 AB211234 AB211235 AB201252 AB212048 BC012735 BC033626 D49737	-25184	+	BT006765 DQ895885 EU176378 S66705 D10537 BC006491 AK313555 TSC_hg19_v1_chr1_-_161279760 NM_000530	-29621	-	BC028905 NM_001102566 TSC_hg19_v1_chr1_+_161228534 BC067884 BC147003 BC147004	-80798	+	NM_001013625	28300	-	TSC_hg19_v1_chr1_+_161475246 NM_001136219 NM_021642 BC019931 AK226059 AK225438 AK298657 AK315225 Y00644 AK225601 M31932 CU676732 AK298734 BC020823 AB529040 DQ892037 DQ895228 J03619 M28697 X62572	165872	+	NM_002155	184672	+	NM_001035511|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001035512|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_001035513|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##NM_003001|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK131051|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK293687|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AK294305|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC020808|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC066329|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##U57877|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB211234|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB211235|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB201252|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##AB212048|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC012735|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BC033626|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##D49737|SDHC|6391|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa##BT006765|MPZ|4359|myelin protein zero##DQ895885|MPZ|4359|myelin protein zero##EU176378|MPZ|4359|myelin protein zero##S66705|MPZ|4359|myelin protein zero##D10537|MPZ|4359|myelin protein zero##BC006491|MPZ|4359|myelin protein zero##AK313555|MPZ|4359|myelin protein zero##NM_000530|MPZ|4359|myelin protein zero##BC028905|PCP4L1|654790|Purkinje cell protein 4 like 1##NM_001102566|PCP4L1|654790|Purkinje cell protein 4 like 1##BC067884|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147003|PCP4L1|654790|Purkinje cell protein 4 like 1##BC147004|PCP4L1|654790|Purkinje cell protein 4 like 1##NM_001013625|C1orf192|257177|chromosome 1 open reading frame 192##NM_001136219|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##NM_021642|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##BC019931|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##AK226059|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##AK225438|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##AK298657|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##AK315225|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##Y00644|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##AK225601|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##M31932|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##AK298734|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##BC020823|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##DQ892037|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##DQ895228|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##J03619|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##M28697|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##X62572|FCGR2A|2212|Fc fragment of IgG, low affinity IIa, receptor (CD32)##NM_002155|HSPA6|3310|heat shock 70kDa protein 6 (HSP70B')	1.896661	0.0	denovo_WM_7:-20:0.768	denovo_WM_7:95:0.948
chr21	36045469	36045613	reg1007510.p1	5.303	+	AF448438 AF448439 NM_053277	-3854	+	BT007363 CU678256 AF303449 U85266 TSC_hg19_v1_chr21_-_35987486 BC002864 AK092184 AX747397 NM_004414 AY325903	-58195	-	NM_203417 U85265	-58797	-	S76350 GU070939 TSC_hg19_v1_chr21_-_36231874	186295	-	S76345 S76346 GU070941 TSC_hg19_v1_chr21_-_36252995	207395	-	TSC_hg19_v1_chr21_-_36259250 EU093088	213731	-	AF448438|CLIC6|54102|chloride intracellular channel 6##AF448439|CLIC6|54102|chloride intracellular channel 6##NM_053277|CLIC6|54102|chloride intracellular channel 6##BT007363|RCAN1|1827|regulator of calcineurin 1##AF303449|RCAN1|1827|regulator of calcineurin 1##U85266|RCAN1|1827|regulator of calcineurin 1##BC002864|RCAN1|1827|regulator of calcineurin 1##AK092184|RCAN1|1827|regulator of calcineurin 1##NM_004414|RCAN1|1827|regulator of calcineurin 1##AY325903|RCAN1|1827|regulator of calcineurin 1##NM_203417|RCAN1|1827|regulator of calcineurin 1##U85265|RCAN1|1827|regulator of calcineurin 1##S76350|RUNX1|861|runt-related transcription factor 1##S76345|RUNX1|861|runt-related transcription factor 1##S76346|RUNX1|861|runt-related transcription factor 1	1.89467	0.0	denovo_WM_7:-1:0.443	denovo_WM_7:-2:0.397	denovo_WM_7:52:0.781
chr10	120969028	120969195	reg1006601.p2	5.302	+	TSC_hg19_v1_chr10_+_120967098 BC018116 BC064506 BC064506 NM_005308 L15388 AK309761 AK309761 AK313012 AB590773	-1850	+	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	-30764	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	-30808	-	NM_002925	326933	-	AB587433 BC009361 TSC_hg19_v1_chr10_-_121302217 AK290773 NM_001005339	333079	-	AB527493 AY633610 AK295243 M96954 TSC_hg19_v1_chr10_-_121356143 AK290984 AK291239	386997	-	BC018116|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##NM_005308|GRK5|2869|G protein-coupled receptor kinase 5##L15388|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK313012|GRK5|2869|G protein-coupled receptor kinase 5##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##NM_002925|RGS10|6001|regulator of G-protein signaling 10##BC009361|RGS10|6001|regulator of G-protein signaling 10##AK290773|RGS10|6001|regulator of G-protein signaling 10##NM_001005339|RGS10|6001|regulator of G-protein signaling 10##AY633610|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK295243|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##M96954|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK290984|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK291239|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1	1.81273	0.012583	
chr15	66154389	66154524	reg1008460.p2	5.302	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-69863	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-69983	-	AF062922 NM_004727	-240187	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	7391	+	TSC_hg19_v1_chr15_-_66321664 AK054827	167237	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	391621	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	0.0	0.0	
chr6	160400289	160400402	reg1001740.p3	5.302	+	TSC_hg19_v1_chr6_+_160390137 NM_000876 Y00285 J03528	-10212	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	-72366	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	-179002	+	NM_003057 NM_153187 X98332 BC126364 AK289887 U77086 AB527951 HQ258293	142569	+	CU689064 BC039899 AK290787 X98333 AB075951 BC030978 NM_003058	279530	-	BC144280 TSC_hg19_v1_chr6_+_160769404 AK314590 AJ001417 NM_021977	369049	+	NM_000876|IGF2R|3482|insulin-like growth factor 2 receptor##Y00285|IGF2R|3482|insulin-like growth factor 2 receptor##J03528|IGF2R|3482|insulin-like growth factor 2 receptor##BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene##AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_003057|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##NM_153187|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##X98332|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC126364|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##AK289887|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##U77086|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##HQ258293|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC039899|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AK290787|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##X98333|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AB075951|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC030978|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##NM_003058|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC144280|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AK314590|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AJ001417|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##NM_021977|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3	0.0	0.0	
chr6	42714546	42714655	reg1000719.p3	5.302	+	TSC_hg19_v1_chr6_-_42714549 BC017479	-48	-	TSC_hg19_v1_chr6_-_42713837 NM_003192	-725	-	TSC_hg19_v1_chr6_-_42713833 BC020170 AK312681 U61234	-772	-	TSC_hg19_v1_chr6_+_42714735 D87077	143	+	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	35097	+	TSC_hg19_v1_chr6_+_42750789 AK096036	36061	+	BC017479|TBCC|6903|tubulin folding cofactor C##NM_003192|TBCC|6903|tubulin folding cofactor C##BC020170|TBCC|6903|tubulin folding cofactor C##AK312681|TBCC|6903|tubulin folding cofactor C##U61234|TBCC|6903|tubulin folding cofactor C##D87077|KIAA0240|23506|KIAA0240##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##AK096036|FLJ38717|401261|FLJ38717 protein	0.0	0.0	
chr6_qbl_hap6	3827733	3827891	reg1009921.p1	5.302	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr11	128601283	128601410	reg1009346.p1	5.301	+	TSC_hg19_v1_chr11_+_128564132 AB385119 AY029368 CU674822 DQ892582 DQ896858	-37204	+	TSC_hg19_v1_chr11_+_128563997 X67001 S45205 BC010115 BC001670	-37291	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	-37366	+	BC136360 BC136361 BC074752 NM_000220 U12541 AK314267 AK290797	111032	-	U12544 U12545 AK308032 U12543 U03884 AK308033 BC063109 NM_153764 NM_153765 NM_153766 NM_153767 U12542	135853	-	AK312837 NM_000890 D50134 BC069386 BC069482 BC069499 BC069571 U39195	159994	+	AY029368|FLI1|2313|Friend leukemia virus integration 1##DQ892582|FLI1|2313|Friend leukemia virus integration 1##DQ896858|FLI1|2313|Friend leukemia virus integration 1##X67001|FLI1|2313|Friend leukemia virus integration 1##S45205|FLI1|2313|Friend leukemia virus integration 1##BC010115|FLI1|2313|Friend leukemia virus integration 1##BC001670|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1##BC136360|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC136361|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC074752|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_000220|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12541|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK314267|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK290797|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12544|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12545|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308032|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12543|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U03884|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK308033|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##BC063109|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153764|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153765|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153766|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##NM_153767|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##U12542|KCNJ1|3758|potassium inwardly-rectifying channel, subfamily J, member 1##AK312837|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##NM_000890|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##D50134|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069386|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069482|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069499|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##BC069571|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5##U39195|KCNJ5|3762|potassium inwardly-rectifying channel, subfamily J, member 5	2.556715	0.0	denovo_WM_7:35:0.722	denovo_WM_7:67:0.281	denovo_WM_7:77:0.209	denovo_WM_7:92:0.259
chr17	40339433	40339609	reg1008058.p1	5.301	+	AB463761 AF041240 NM_001524	-2095	-	TSC_hg19_v1_chr17_-_40333301 AB022698 NM_012285	-6246	-	TSC_hg19_v1_chr17_-_40307015 BC114439 BC106039 NM_001252039 NM_004583 NM_201434	-32483	-	AK298933 TSC_hg19_v1_chr17_-_40346487 BC022784 AK122777 AK123075 AK307058 BC011056 AK075277 NM_001142622 NM_001142623 NM_032484	6967	-	AK308163 TSC_hg19_v1_chr17_-_40428385	88829	-	TSC_hg19_v1_chr17_-_40428410 U47686 AB208920 BC020868 BC065227 NM_012448	88911	-	AF041240|HCRT|3060|hypocretin (orexin) neuropeptide precursor##NM_001524|HCRT|3060|hypocretin (orexin) neuropeptide precursor##AB022698|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##NM_012285|KCNH4|23415|potassium voltage-gated channel, subfamily H (eag-related), member 4##BC114439|RAB5C|5878|RAB5C, member RAS oncogene family##BC106039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_001252039|RAB5C|5878|RAB5C, member RAS oncogene family##NM_004583|RAB5C|5878|RAB5C, member RAS oncogene family##NM_201434|RAB5C|5878|RAB5C, member RAS oncogene family##AK298933|GHDC|84514|GH3 domain containing##BC022784|GHDC|84514|GH3 domain containing##AK122777|GHDC|84514|GH3 domain containing##AK123075|GHDC|84514|GH3 domain containing##AK307058|GHDC|84514|GH3 domain containing##BC011056|GHDC|84514|GH3 domain containing##AK075277|GHDC|84514|GH3 domain containing##NM_001142622|GHDC|84514|GH3 domain containing##NM_001142623|GHDC|84514|GH3 domain containing##NM_032484|GHDC|84514|GH3 domain containing##AK308163|STAT5B|6777|signal transducer and activator of transcription 5B##U47686|STAT5B|6777|signal transducer and activator of transcription 5B##AB208920|STAT5B|6777|signal transducer and activator of transcription 5B##BC020868|STAT5B|6777|signal transducer and activator of transcription 5B##BC065227|STAT5B|6777|signal transducer and activator of transcription 5B##NM_012448|STAT5B|6777|signal transducer and activator of transcription 5B	1.317899	0.0	
chr18	10530183	10530319	reg1006914.p2	5.300	+	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-4154	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-4195	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	-4223	+	NM_022068	618509	-	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	1158961	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	1221264	+	CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	1.982347	0.0	denovo_WM_7:-43:0.977	denovo_WM_7:-58:0.976
chr6	27102283	27102424	reg1009156.p1	5.300	+	TSC_hg19_v1_chr6_+_27100821 AK312124 NM_021064 L19778 BC067782 BC016677 AB590259 DQ891024 DQ894204 DQ894286	-1536	+	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	-1788	-	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	-442401	-	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	4720	+	AB590085 EU446970 TSC_hg19_v1_chr6_-_27114635 AJ223352 BC051872 BC064959 BC108737 BC000893 AK292062 NM_080593	12254	-	BC093849 BC093851 TSC_hg19_v1_chr6_+_27114884 AK312232 AB528147 BC134366 BC148293 NM_080596	12530	+	AK312124|HIST1H2AG|8969|histone cluster 1, H2ag##NM_021064|HIST1H2AG|8969|histone cluster 1, H2ag##L19778|HIST1H2AG|8969|histone cluster 1, H2ag##BC067782|HIST1H2AG|8969|histone cluster 1, H2ag##BC016677|HIST1H2AG|8969|histone cluster 1, H2ag##DQ891024|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894204|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894286|HIST1H2AG|8969|histone cluster 1, H2ag##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322##BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i##EU446970|HIST1H2BK|85236|histone cluster 1, H2bk##AJ223352|HIST1H2BK|85236|histone cluster 1, H2bk##BC051872|HIST1H2BK|85236|histone cluster 1, H2bk##BC064959|HIST1H2BK|85236|histone cluster 1, H2bk##BC108737|HIST1H2BK|85236|histone cluster 1, H2bk##BC000893|HIST1H2BK|85236|histone cluster 1, H2bk##AK292062|HIST1H2BK|85236|histone cluster 1, H2bk##NM_080593|HIST1H2BK|85236|histone cluster 1, H2bk##BC093849|HIST1H2AH|85235|histone cluster 1, H2ah##BC093851|HIST1H2AH|85235|histone cluster 1, H2ah##AK312232|HIST1H2AH|85235|histone cluster 1, H2ah##BC134366|HIST1H2AH|85235|histone cluster 1, H2ah##BC148293|HIST1H2AH|85235|histone cluster 1, H2ah##NM_080596|HIST1H2AH|85235|histone cluster 1, H2ah	0.99857	0.0	denovo_WM_7:48:0.494	denovo_WM_7:49:0.494
chr12	113667933	113668113	reg1008524.p2	5.299	+	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	-8720	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	-8743	+	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	-8780	+	BC098174 BC098360 TSC_hg19_v1_chr12_-_113772887	104838	-	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	104902	-	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	128348	+	BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##BC098360|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2	0.995783	0.0	
chr12	53973387	53973567	reg1002910.p1	5.299	+	BC104234 BC104235 AF005271 NM_003717	-72081	-	NM_134324	-78101	+	TSC_hg19_v1_chr12_+_53895135 AK309569 U08998 AK290737 AK293728 AB464283 BT007140 DQ893549 DQ893931	-78349	+	AB463398 X57197 NM_001130059	21316	-	TSC_hg19_v1_chr12_-_54019764 BC042363 NM_001206683	46258	-	TSC_hg19_v1_chr12_-_54020167 BC136302 X52943 AK298853 AK313507 BC032433 BC140006 NM_001130060 NM_001206682 NM_006856	46676	-	BC104234|NPFF|8620|neuropeptide FF-amide peptide precursor##BC104235|NPFF|8620|neuropeptide FF-amide peptide precursor##AF005271|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_003717|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_134324|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK309569|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##U08998|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK290737|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##BT007140|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893549|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893931|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##X57197|ATF7|11016|activating transcription factor 7##NM_001130059|ATF7|11016|activating transcription factor 7##BC042363|ATF7|11016|activating transcription factor 7##NM_001206683|ATF7|11016|activating transcription factor 7##BC136302|ATF7|11016|activating transcription factor 7##X52943|ATF7|11016|activating transcription factor 7##AK298853|ATF7|11016|activating transcription factor 7##AK313507|ATF7|11016|activating transcription factor 7##BC032433|ATF7|11016|activating transcription factor 7##BC140006|ATF7|11016|activating transcription factor 7##NM_001130060|ATF7|11016|activating transcription factor 7##NM_001206682|ATF7|11016|activating transcription factor 7##NM_006856|ATF7|11016|activating transcription factor 7	0.0	0.015721	
chr3	61880994	61881111	reg1004325.p2	5.299	+	AB055764 TSC_hg19_v1_chr3_-_61728812	-152241	-	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-333076	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-333766	+	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	423654	+	BC017772 NM_020685	424343	+	AK290464 NM_018008	478137	-	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14##AK290464|FEZF2|55079|FEZ family zinc finger 2##NM_018008|FEZF2|55079|FEZ family zinc finger 2	0.937649	0.0	denovo_WM_7:32:0.313	denovo_WM_7:33:0.593
chr12	103890013	103890167	reg1007853.p1	5.298	+	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	-344	-	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	-537998	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-538569	+	AY311388 AJ295695 NM_017564 AB052958	90971	+	AB032773 TSC_hg19_v1_chr12_-_104234857	344734	-	TSC_hg19_v1_chr12_-_104234976 BC052293 NM_001031701	344889	-	AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3##BC052293|NT5DC3|51559|5'-nucleotidase domain containing 3##NM_001031701|NT5DC3|51559|5'-nucleotidase domain containing 3	0.0	0.796738	CTCF.p2:53:0.797
chr10	52124918	52125096	reg1006936.p1	5.297	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-116667	-	NM_018232	-287122	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-297285	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	258696	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	374703	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	520386	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.999666	0.0	
chr11	5653179	5653319	reg1006784.p1	5.297	+	NM_021616 AK027876 AF220143 AF220144	-7023	+	AB039902 NM_001003827	-12076	+	AK290172 NM_001003818 NM_001003819 NM_001198644 NM_001198645 BC047564 BC136871 BC140722 BC144424 AB039903 BC065575 AK293295 AK298301 AK316178	-35300	+	NM_130390 AB039904	248	+	TSC_hg19_v1_chr11_-_5701373 AB362928 AY625000 CU676898 DQ288685 JF928461 JF928462 AF220025 AF220026 AF220027 AF220028 AF220029	48167	-	TSC_hg19_v1_chr11_-_5706305 BC021258 BX647152 AK027593 NM_033034 NM_033092 NM_033093	53014	-	NM_021616|TRIM34|53840|tripartite motif containing 34##AK027876|TRIM34|53840|tripartite motif containing 34##AF220143|TRIM34|53840|tripartite motif containing 34##AF220144|TRIM34|53840|tripartite motif containing 34##AB039902|TRIM34|53840|tripartite motif containing 34##NM_001003827|TRIM34|53840|tripartite motif containing 34##AK290172|TRIM6|117854|tripartite motif containing 6##NM_001003818|TRIM6|117854|tripartite motif containing 6##NM_001003819|TRIM6-TRIM34|445372|TRIM6-TRIM34 readthrough##NM_001198644|TRIM6|117854|tripartite motif containing 6##NM_001198645|TRIM6|117854|tripartite motif containing 6##BC047564|TRIM6|117854|tripartite motif containing 6##BC136871|TRIM6-TRIM34|445372|TRIM6-TRIM34 readthrough##BC140722|TRIM6-TRIM34|445372|TRIM6-TRIM34 readthrough##BC144424|TRIM6-TRIM34|445372|TRIM6-TRIM34 readthrough##AB039903|TRIM6-TRIM34|445372|TRIM6-TRIM34 readthrough##BC065575|TRIM6|117854|tripartite motif containing 6##AK293295|TRIM6|117854|tripartite motif containing 6##AK298301|TRIM6|117854|tripartite motif containing 6##AK316178|TRIM6|117854|tripartite motif containing 6##NM_130390|TRIM34|53840|tripartite motif containing 34##AB039904|TRIM34|53840|tripartite motif containing 34##AB362928|TRIM5|85363|tripartite motif containing 5##AY625000|TRIM5|85363|tripartite motif containing 5##DQ288685|TRIM5|85363|tripartite motif containing 5##AF220025|TRIM5|85363|tripartite motif containing 5##AF220026|TRIM5|85363|tripartite motif containing 5##AF220027|TRIM5|85363|tripartite motif containing 5##AF220028|TRIM5|85363|tripartite motif containing 5##AF220029|TRIM5|85363|tripartite motif containing 5##BC021258|TRIM5|85363|tripartite motif containing 5##BX647152|TRIM5|85363|tripartite motif containing 5##AK027593|TRIM5|85363|tripartite motif containing 5##NM_033034|TRIM5|85363|tripartite motif containing 5##NM_033092|TRIM5|85363|tripartite motif containing 5##NM_033093|TRIM5|85363|tripartite motif containing 5	0.0	0.0	
chr2	12684407	12684530	reg1009810.p1	5.297	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-797693	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-874177	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-1001625	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	172785	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	173448	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	173929	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.041217	0.0	
chr22	29070187	29070349	reg1007335.p1	5.297	+	TSC_hg19_v1_chr22_-_28315245 BC018704 D30037 AK313064 CR456541 NM_012399	-755004	-	TSC_hg19_v1_chr22_-_28315203 BC031427	-755061	-	TSC_hg19_v1_chr22_-_28315184 AB528209 CU013141 CU013429 CU689164 AK302367	-755094	-	TSC_hg19_v1_chr22_-_29075801 NM_001145418	5525	-	BC004207 AK289360 CR456418 NM_001005735 NM_007194 NM_145862 AK290754 AB164374	67549	-	BC000004 TSC_hg19_v1_chr22_+_29138056 NM_172002 BC065569 CR456462 AY191719 AB528150 CU013013 CU013301	67793	+	BC018704|PITPNB|23760|phosphatidylinositol transfer protein, beta##D30037|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK313064|PITPNB|23760|phosphatidylinositol transfer protein, beta##CR456541|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_012399|PITPNB|23760|phosphatidylinositol transfer protein, beta##BC031427|PITPNB|23760|phosphatidylinositol transfer protein, beta##CU013141|PITPNB|23760|phosphatidylinositol transfer protein, beta##CU013429|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK302367|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_001145418|TTC28|23331|tetratricopeptide repeat domain 28##BC004207|CHEK2|11200|checkpoint kinase 2##AK289360|CHEK2|11200|checkpoint kinase 2##CR456418|CHEK2|11200|checkpoint kinase 2##NM_001005735|CHEK2|11200|checkpoint kinase 2##NM_007194|CHEK2|11200|checkpoint kinase 2##NM_145862|CHEK2|11200|checkpoint kinase 2##AK290754|CHEK2|11200|checkpoint kinase 2##NM_172002|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC065569|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##CR456462|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##AY191719|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)	1.117721	0.0	
chr2	74409087	74409267	reg1007220.p2	5.297	+	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	-3270	-	AL122062 TSC_hg19_v1_chr2_-_74382411	-26796	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-33957	+	AK057260 TSC_hg19_v1_chr2_-_74425749	16538	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	16560	+	AF243499 AF293338 NM_021196	132973	-	AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AF243499|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##AF293338|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5##NM_021196|SLC4A5|57835|solute carrier family 4, sodium bicarbonate cotransporter, member 5	1.098469	0.0	denovo_WM_7:64:0.428	denovo_WM_7:65:0.427
chr4	69920982	69921136	reg1001478.p2	5.297	+	NM_001075 NM_001144767	-34947	-	HQ258456 BC130533 AY358727 AY542891 NM_024743	-103566	-	TSC_hg19_v1_chr4_+_69681710 BC113649 AK222839 AK222872 AK292738 AK298432 NM_001075 NM_001144767 X63359	-239341	+	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	41155	+	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	159398	-	AF177272 AF177273 AF177274 NM_001207004 NM_053039 AB451456	225158	+	NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##HQ258456|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC130533|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY358727|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY542891|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##NM_024743|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AF177272|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177273|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177274|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_001207004|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_053039|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AB451456|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28	1.639101	0.0	denovo_WM_7:12:0.932	denovo_WM_7:-18:0.234	denovo_WM_7:-19:0.342
chr14	93797427	93797523	reg1009285.p1	5.296	+	TSC_hg19_v1_chr14_+_93673628 AB590826 BC051819 BX248249	-123841	+	BC017013 TSC_hg19_v1_chr14_+_93673625	-123851	+	TSC_hg19_v1_chr14_+_93673600 BC015046 AK315492	-123879	+	TSC_hg19_v1_chr14_-_93799368 AB040958 AK001510	1890	-	TSC_hg19_v1_chr14_-_93799376 AK291422 BC141850 BX248762 NM_001002860 NM_018167 BC047071	1929	-	AK125327 NM_020818	2089	+	BC051819|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BX248249|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC017013|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC015046|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AK315492|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AB040958|BTBD7|55727|BTB (POZ) domain containing 7##AK001510|BTBD7|55727|BTB (POZ) domain containing 7##AK291422|BTBD7|55727|BTB (POZ) domain containing 7##BC141850|BTBD7|55727|BTB (POZ) domain containing 7##BX248762|BTBD7|55727|BTB (POZ) domain containing 7##NM_001002860|BTBD7|55727|BTB (POZ) domain containing 7##NM_018167|BTBD7|55727|BTB (POZ) domain containing 7##BC047071|BTBD7|55727|BTB (POZ) domain containing 7##AK125327|UNC79|57578|unc-79 homolog (C. elegans)##NM_020818|UNC79|57578|unc-79 homolog (C. elegans)	0.987742	0.0	denovo_WM_7:-19:0.949
chr15	23304546	23304654	reg1009739.p1	5.296	+	DQ309040 BC048987 TSC_hg19_v1_chr15_-_23208467	-96189	-	TSC_hg19_v1_chr15_-_23115247 BC044583	-189352	-	BC025678 NM_001142275	-217758	-	TSC_hg19_v1_chr15_-_23378205 AK308640	73590	-	TSC_hg19_v1_chr15_-_23378229 AF041081 AF041080	73644	-	NM_005664	505853	+	DQ309040|WHAMMP3|339005|WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3##BC048987|WHAMMP3|339005|WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3##BC044583|LOC283683|283683|uncharacterized LOC283683##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK308640|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##AF041081|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##AF041080|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##NM_005664|MKRN3|7681|makorin ring finger protein 3	0.998151	0.0	
chr15	76602390	76602534	reg1009387.p1	5.296	+	TSC_hg19_v1_chr15_+_76352323 AK056777 AK308676	-250133	+	TSC_hg19_v1_chr15_+_76352281 AK095509 NM_152335	-250173	+	AK311204 TSC_hg19_v1_chr15_-_76352131	-250360	-	BT009796 J04058 TSC_hg19_v1_chr15_-_76603737 AB529049 BC095457	1270	-	TSC_hg19_v1_chr15_-_76603771 AK300044 BC015526 D28380	1303	-	TSC_hg19_v1_chr15_-_76603791 BC029995	1335	-	AK308676|C15orf27|123591|chromosome 15 open reading frame 27##AK095509|C15orf27|123591|chromosome 15 open reading frame 27##NM_152335|C15orf27|123591|chromosome 15 open reading frame 27##AK311204|NRG4|145957|neuregulin 4##BT009796|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##J04058|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC095457|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##AK300044|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC015526|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC029995|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide	1.873268	0.0	denovo_WM_7:-31:0.771	denovo_WM_7:-46:0.668	denovo_WM_7:-47:0.229
chr16	85148669	85148849	reg1001984.p1	5.296	+	BC093665 BC111944 AK126284 NM_198491	-2705	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-87389	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-103630	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	496262	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	498194	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	573783	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.0	0.873493	CTCF.p2:-51:0.829
chr2	228670900	228670987	reg1005931.p2	5.296	+	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	-88222	-	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	-173025	-	TSC_hg19_v1_chr2_+_228356287 AK295030	-314652	+	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	7648	+	AK097409 NM_178821 BC036377 AK098821 AK301861	65409	+	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	375419	-	AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AK295030|AGFG1|3267|ArfGAP with FG repeats 1##BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing	0.0	0.0	
chr20	34542447	34542603	reg1009795.p1	5.295	+	TSC_hg19_v1_chr20_-_34542404 AF204271 BC000785 AF207829 NM_033630	-59	-	AB464702 AM392883 AM393129 CR457188 EU446495 TSC_hg19_v1_chr20_-_34542233	-290	-	TSC_hg19_v1_chr20_+_34359958 BC093405 NM_016436 BC062681 AF258787 AY134747 AK054597 BC150178 AF220416 AK314503 BC080598 BC015538 BC016948 BC048210 BC006415	-182580	+	NM_016558	755	-	AK057454 NM_001207076 NM_080834 BC030782 BC057288 BC114634 BC114945	14011	+	TSC_hg19_v1_chr20_-_34638883 BC011592 AK090641 AX746554 BC031254	96379	-	AF204271|SCAND1|51282|SCAN domain containing 1##BC000785|SCAND1|51282|SCAN domain containing 1##AF207829|SCAND1|51282|SCAN domain containing 1##NM_033630|SCAND1|51282|SCAN domain containing 1##AM392883|SCAND1|51282|SCAN domain containing 1##AM393129|SCAND1|51282|SCAN domain containing 1##CR457188|SCAND1|51282|SCAN domain containing 1##EU446495|SCAND1|51282|SCAN domain containing 1##BC093405|PHF20|51230|PHD finger protein 20##NM_016436|PHF20|51230|PHD finger protein 20##BC062681|PHF20|51230|PHD finger protein 20##AF258787|PHF20|51230|PHD finger protein 20##AY134747|PHF20|51230|PHD finger protein 20##AK054597|PHF20|51230|PHD finger protein 20##BC150178|PHF20|51230|PHD finger protein 20##AF220416|PHF20|51230|PHD finger protein 20##AK314503|PHF20|51230|PHD finger protein 20##BC080598|PHF20|51230|PHD finger protein 20##BC016948|PHF20|51230|PHD finger protein 20##BC048210|PHF20|51230|PHD finger protein 20##BC006415|PHF20|51230|PHD finger protein 20##NM_016558|SCAND1|51282|SCAN domain containing 1##AK057454|C20orf152|140894|chromosome 20 open reading frame 152##NM_001207076|C20orf152|140894|chromosome 20 open reading frame 152##NM_080834|C20orf152|140894|chromosome 20 open reading frame 152##BC030782|C20orf152|140894|chromosome 20 open reading frame 152##BC057288|C20orf152|140894|chromosome 20 open reading frame 152##BC114634|C20orf152|140894|chromosome 20 open reading frame 152##BC114945|C20orf152|140894|chromosome 20 open reading frame 152##BC011592|LOC647979|647979|uncharacterized LOC647979##AK090641|LOC647979|647979|uncharacterized LOC647979	0.0	0.30721	CTCF.p2:-39:0.307
chr22	30038870	30039024	reg1008887.p2	5.295	+	BC020257 TSC_hg19_v1_chr22_+_29999653 BC003112 L11353 Z22664 CR456530 AF122827 AF122828 AF123570 AB587384 CU013130 CU013418 DQ891697 DQ894878 AF369661 AF369662 AF369663 AF369664 AF369665 AF369666 AF369667 AF369668 EF517524 S73853	-39083	+	TSC_hg19_v1_chr22_+_29999621 AF369701	-39333	+	AK297116 TSC_hg19_v1_chr22_+_29999605	-39342	+	TSC_hg19_v1_chr22_+_30116288 BC051805 NM_182527 HQ257899	77403	+	BC009717 TSC_hg19_v1_chr22_-_30162985 AK292671 NM_001003692 NM_019103	124013	-	TSC_hg19_v1_chr22_-_30162997 AK123261	124048	-	BC020257|NF2|4771|neurofibromin 2 (merlin)##BC003112|NF2|4771|neurofibromin 2 (merlin)##L11353|NF2|4771|neurofibromin 2 (merlin)##Z22664|NF2|4771|neurofibromin 2 (merlin)##CR456530|NF2|4771|neurofibromin 2 (merlin)##AF122827|NF2|4771|neurofibromin 2 (merlin)##AF122828|NF2|4771|neurofibromin 2 (merlin)##AF123570|NF2|4771|neurofibromin 2 (merlin)##CU013130|NF2|4771|neurofibromin 2 (merlin)##CU013418|NF2|4771|neurofibromin 2 (merlin)##DQ891697|NF2|4771|neurofibromin 2 (merlin)##DQ894878|NF2|4771|neurofibromin 2 (merlin)##AF369661|NF2|4771|neurofibromin 2 (merlin)##AF369662|NF2|4771|neurofibromin 2 (merlin)##AF369663|NF2|4771|neurofibromin 2 (merlin)##AF369664|NF2|4771|neurofibromin 2 (merlin)##AF369665|NF2|4771|neurofibromin 2 (merlin)##AF369666|NF2|4771|neurofibromin 2 (merlin)##AF369667|NF2|4771|neurofibromin 2 (merlin)##AF369668|NF2|4771|neurofibromin 2 (merlin)##EF517524|NF2|4771|neurofibromin 2 (merlin)##S73853|NF2|4771|neurofibromin 2 (merlin)##AF369701|NF2|4771|neurofibromin 2 (merlin)##AK297116|NF2|4771|neurofibromin 2 (merlin)##BC051805|CABP7|164633|calcium binding protein 7##NM_182527|CABP7|164633|calcium binding protein 7##HQ257899|CABP7|164633|calcium binding protein 7##BC009717|ZMAT5|55954|zinc finger, matrin-type 5##AK292671|ZMAT5|55954|zinc finger, matrin-type 5##NM_001003692|ZMAT5|55954|zinc finger, matrin-type 5##NM_019103|ZMAT5|55954|zinc finger, matrin-type 5	0.999517	0.0	denovo_WM_7:9:0.518	denovo_WM_7:10:0.463
chr19	18682131	18682311	reg1009969.p1	5.294	+	TSC_hg19_v1_chr19_+_18668679 AF173381	-13547	+	NM_001171948 NM_001171949 NM_024069 TSC_hg19_v1_chr19_+_18668584 AK125365 AK098346 BC001080 BC006479	-13611	+	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	-27839	-	NM_001033930 NM_003333 TSC_hg19_v1_chr19_+_18682666 AF348700 BC101830 BC101832 BC143668 D28425 AK314717	436	+	NM_001100418 NM_001100419 TSC_hg19_v1_chr19_+_18699611 BC012078 AK000857 AK091925 AX747258 AK054670	17346	+	EU832355 EU832440 AF178684 TSC_hg19_v1_chr19_-_18717548	35299	-	AF173381|KXD1|79036|KxDL motif containing 1##NM_001171948|KXD1|79036|KxDL motif containing 1##NM_001171949|KXD1|79036|KxDL motif containing 1##NM_024069|KXD1|79036|KxDL motif containing 1##AK125365|KXD1|79036|KxDL motif containing 1##AK098346|KXD1|79036|KxDL motif containing 1##BC001080|KXD1|79036|KxDL motif containing 1##BC006479|KXD1|79036|KxDL motif containing 1##BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_001033930|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_003333|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AF348700|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101830|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101832|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC143668|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AK314717|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_001100418|C19orf60|55049|chromosome 19 open reading frame 60##NM_001100419|C19orf60|55049|chromosome 19 open reading frame 60##BC012078|C19orf60|55049|chromosome 19 open reading frame 60##AK000857|C19orf60|55049|chromosome 19 open reading frame 60##AK091925|C19orf60|55049|chromosome 19 open reading frame 60##AK054670|C19orf60|55049|chromosome 19 open reading frame 60##EU832355|CRLF1|9244|cytokine receptor-like factor 1##EU832440|CRLF1|9244|cytokine receptor-like factor 1##AF178684|CRLF1|9244|cytokine receptor-like factor 1	0.995856	0.0	
chr20	1166563	1166660	reg1007198.p1	5.294	+	AK002052 NM_018354	-1495	-	TSC_hg19_v1_chr20_+_1099244 NM_006814 AK098612 AK294134 D88378 AB590890 HQ258165 AK300667	-67258	+	AK302164 NM_178578 BC126127 BC126462	-72651	+	AK092524 NM_001009612 BC127730 BC127731 BC141955 BC141956 BC150531 BC150532	17521	+	BC157891 BC171911 NM_001136566	40152	+	BC035788 NM_014723 AB002372 AF187733	80367	+	AK002052|TMEM74B|55321|transmembrane protein 74B##NM_018354|TMEM74B|55321|transmembrane protein 74B##NM_006814|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##AK098612|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##AK294134|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##D88378|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##HQ258165|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##AK300667|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##AK302164|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##NM_178578|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##BC126127|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##BC126462|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##AK092524|C20orf202|400831|chromosome 20 open reading frame 202##NM_001009612|C20orf202|400831|chromosome 20 open reading frame 202##BC127730|C20orf202|400831|chromosome 20 open reading frame 202##BC127731|C20orf202|400831|chromosome 20 open reading frame 202##BC141955|C20orf202|400831|chromosome 20 open reading frame 202##BC141956|C20orf202|400831|chromosome 20 open reading frame 202##BC150532|C20orf202|400831|chromosome 20 open reading frame 202##BC157891|RAD21L1|642636|RAD21-like 1 (S. pombe)##BC171911|RAD21L1|642636|RAD21-like 1 (S. pombe)##NM_001136566|RAD21L1|642636|RAD21-like 1 (S. pombe)##BC035788|SNPH|9751|syntaphilin##NM_014723|SNPH|9751|syntaphilin##AB002372|SNPH|9751|syntaphilin##AF187733|SNPH|9751|syntaphilin	0.0	0.148049	
chr20	49126449	49126547	reg1010289.p1	5.294	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-318868	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-319117	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-319305	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	378	+	TSC_hg19_v1_chr20_+_49126916 AK316563	415	+	AK299830 TSC_hg19_v1_chr20_+_49126919	421	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	0.0	0.0	
chr12	56754244	56754383	reg1009877.p1	5.293	+	TSC_hg19_v1_chr12_-_56753946 AK316516 AK295052 AK295114 NM_005419 NM_198332	-337	-	TSC_hg19_v1_chr12_-_56753912 AK308051	-400	-	BC051284 M97934 TSC_hg19_v1_chr12_-_56753892 AK310727 AK296939 AK296940	-430	-	CU693184 L27050 AK314892 BC026257 NM_001638 CR936663	2253	-	TSC_hg19_v1_chr12_-_56843191 BC031514 AF098162 AK296869 BC039842 NM_003920	88880	-	HQ258134 BC074913 BC117474 NM_012064	94103	-	AK316516|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295052|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295114|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_005419|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_198332|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK308051|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##BC051284|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##M97934|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK310727|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK296939|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK296940|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##L27050|APOF|319|apolipoprotein F##AK314892|APOF|319|apolipoprotein F##BC026257|APOF|319|apolipoprotein F##NM_001638|APOF|319|apolipoprotein F##CR936663|APOF|319|apolipoprotein F##BC031514|TIMELESS|8914|timeless homolog (Drosophila)##AF098162|TIMELESS|8914|timeless homolog (Drosophila)##AK296869|TIMELESS|8914|timeless homolog (Drosophila)##BC039842|TIMELESS|8914|timeless homolog (Drosophila)##NM_003920|TIMELESS|8914|timeless homolog (Drosophila)##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber	0.978892	0.0	denovo_WM_7:58:0.808
chr13	50013922	50014102	reg1009060.p1	5.293	+	NM_030925	-38278	-	NM_001193478 NM_030911 TSC_hg19_v1_chr13_+_49822076 BC022801 BC092434 AK312835 BC032889 BC070238 AK297400 BC009562 AY027525 BC048092 BC125202 BC125203	-191923	+	AB463896 AY603964 NM_001507	-219540	+	TSC_hg19_v1_chr13_-_50018201 AY211923 AY288977 BX647518 NM_001079670	4169	-	TSC_hg19_v1_chr13_+_50018457 NM_031915 AK308220 AF334407	4458	+	TSC_hg19_v1_chr13_+_50018555 AK308354	4571	+	NM_030925|CAB39L|81617|calcium binding protein 39-like##NM_001193478|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##NM_030911|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC022801|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC092434|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK312835|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC032889|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC070238|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK297400|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC009562|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY027525|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC048092|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125202|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125203|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY603964|MLNR|2862|motilin receptor##NM_001507|MLNR|2862|motilin receptor##AY211923|CAB39L|81617|calcium binding protein 39-like##AY288977|CAB39L|81617|calcium binding protein 39-like##BX647518|CAB39L|81617|calcium binding protein 39-like##NM_001079670|CAB39L|81617|calcium binding protein 39-like##NM_031915|SETDB2|83852|SET domain, bifurcated 2##AK308220|SETDB2|83852|SET domain, bifurcated 2##AF334407|SETDB2|83852|SET domain, bifurcated 2##AK308354|SETDB2|83852|SET domain, bifurcated 2	0.997416	0.0	
chr20	5626204	5626370	reg1002390.p1	5.293	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-34700	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-331251	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-518592	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	104779	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	265839	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	304836	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.0	0.0	
chr5	145562844	145563024	reg1007971.p2	5.293	+	TSC_hg19_v1_chr5_-_145562236 NM_020117	-670	-	TSC_hg19_v1_chr5_-_145562214 AB037773 BC152422	-713	-	TSC_hg19_v1_chr5_-_145562187 BC131798 BC110084 D84223 BC151214 AK304134 BC068041 AK293750 AK025441 AK295874 AF151026 BC105581 AK315178 BC150213	-795	-	AK128738 TSC_hg19_v1_chr5_+_145583122	20183	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	20232	+	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	155696	+	NM_020117|LARS|51520|leucyl-tRNA synthetase##AB037773|LARS|51520|leucyl-tRNA synthetase##BC152422|LARS|51520|leucyl-tRNA synthetase##BC131798|LARS|51520|leucyl-tRNA synthetase##BC110084|LARS|51520|leucyl-tRNA synthetase##D84223|LARS|51520|leucyl-tRNA synthetase##BC151214|LARS|51520|leucyl-tRNA synthetase##AK304134|LARS|51520|leucyl-tRNA synthetase##BC068041|LARS|51520|leucyl-tRNA synthetase##AK293750|LARS|51520|leucyl-tRNA synthetase##AK025441|LARS|51520|leucyl-tRNA synthetase##AK295874|LARS|51520|leucyl-tRNA synthetase##AF151026|LARS|51520|leucyl-tRNA synthetase##BC105581|LARS|51520|leucyl-tRNA synthetase##AK315178|LARS|51520|leucyl-tRNA synthetase##BC150213|LARS|51520|leucyl-tRNA synthetase##AK128738|RBM27|54439|RNA binding motif protein 27##BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3	1.987618	0.0	denovo_WM_7:17:0.266	denovo_WM_7:18:0.717	denovo_WM_7:33:0.853
chr9	41018392	41018512	reg1010426.p2	5.293	+	AK057375 AK292150 NM_033160	-226366	-	NM_001083124	-318162	+	AK302569 NM_001040065 NM_001085452 BC146855	-1133491	+	BC040528 NM_001113541 NM_015667 NM_001242613	308927	-	BC040528 NM_001113541 NM_015667	482226	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	936462	-	AK057375|ZNF658|26149|zinc finger protein 658##AK292150|ZNF658|26149|zinc finger protein 658##NM_033160|ZNF658|26149|zinc finger protein 658##NM_001083124|FAM75A3|727830|family with sequence similarity 75, member A3##AK302569|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001040065|FAM75A2|642265|family with sequence similarity 75, member A2##NM_001085452|FAM75A1|647060|family with sequence similarity 75, member A1##BC146855|FAM75A2|642265|family with sequence similarity 75, member A2##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881	0.931134	0.0	denovo_WM_7:-29:0.711
chr1	185287014	185287154	reg1011362.p1	5.292	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-614	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-765	-	TSC_hg19_v1_chr1_+_185126418 AK291443	-160688	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	416492	+	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	978323	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	1057173	-	NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##AK291443|SWT1|54823|SWT1 RNA endoribonuclease homolog (S. cerevisiae)##AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)	0.0	0.0	
chr7	102106045	102106148	reg1003329.p2	5.292	+	TSC_hg19_v1_chr7_+_102105459 AB209379 CU688900	-604	+	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	-688	+	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	-779	-	DQ893151 DQ896446 TSC_hg19_v1_chr7_-_102119367 X98433 BC040116 BC024165 BC141830 BC139902 BC065711 L37127 X82385 AK290515 NM_006234	13247	-	AK302217 NM_001031618 NM_001166339	85582	+	AJ277739 AJ277740 AJ277741 AB384935 BC056864 BC071870 TSC_hg19_v1_chr7_-_102212997 BC044209 BC050598	106891	-	AB209379|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##DQ893151|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##DQ896446|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##X98433|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC040116|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC024165|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC141830|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC139902|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##BC065711|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##L37127|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##X82385|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##AK290515|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##NM_006234|POLR2J|5439|polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##AJ277739|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AJ277740|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##AJ277741|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2	0.0	0.0	
chrX	2625401	2625536	reg1007861.p1	5.292	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	-16156	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-206480	-	BC015030 NM_001171135	-206889	-	AK304164 NM_001141919 NM_001141920 NM_175569 AF380356 AF534880 BC100764 BC100765 BC100766 BC100767 Z48517 Z48518 Z48519	44746	+	TSC_hg19_v1_chrX_+_2746813 NM_001079855 NM_001184702 NM_001184703 NM_001184704 NM_003918 U94362 AK098046 AK292496 U94363 BC023152	121434	+	AF160499 TSC_hg19_v1_chrX_-_2847338 AB590968 BC080179 BC020229	221863	-	M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##AK304164|XG|7499|Xg blood group##NM_001141919|XG|7499|Xg blood group##NM_001141920|XG|7499|Xg blood group##NM_175569|XG|7499|Xg blood group##AF380356|XG|7499|Xg blood group##BC100764|XG|7499|Xg blood group##BC100765|XG|7499|Xg blood group##BC100766|XG|7499|Xg blood group##BC100767|XG|7499|Xg blood group##Z48517|XG|7499|Xg blood group##Z48518|XGPY2|100132596|Xg pseudogene, Y-linked 2##Z48519|XGPY2|100132596|Xg pseudogene, Y-linked 2##NM_001079855|GYG2|8908|glycogenin 2##NM_001184702|GYG2|8908|glycogenin 2##NM_001184703|GYG2|8908|glycogenin 2##NM_001184704|GYG2|8908|glycogenin 2##NM_003918|GYG2|8908|glycogenin 2##U94362|GYG2|8908|glycogenin 2##AK098046|GYG2|8908|glycogenin 2##AK292496|GYG2|8908|glycogenin 2##U94363|GYG2|8908|glycogenin 2##BC023152|GYG2|8908|glycogenin 2##AF160499|ARSD|414|arylsulfatase D##BC080179|ARSD|414|arylsulfatase D##BC020229|ARSD|414|arylsulfatase D	1.047998	0.0	denovo_WM_7:-75:0.225	denovo_WM_7:-78:0.624
chrY	2575401	2575536	reg1007862.p1	5.292	+	M16279 BC010109 NM_001122898 NM_002414 BC024310 X16996 BC002584 AK313617 BC003147 BC021620 AK309517 DQ891912 AB463475 CR450286 U82164	-16156	+	BC019696 CU689342 DQ891613 DQ894805 AJ293620 AY358849 BC032340 AB018328 NM_001171136 NM_004729 NM_145177	-206480	-	BC015030 NM_001171135	-206889	-	S56543 S53156 AB464705 EU446863 BC074923 BC074924 L10101 NM_003140	80166	-	TSC_hg19_v1_chrY_+_2709618 NM_001008	134141	+	TSC_hg19_v1_chrY_+_2709642 AK292819 AK222594 AB055773 BC010286 M58459	134173	+	M16279|CD99|4267|CD99 molecule##BC010109|CD99|4267|CD99 molecule##NM_001122898|CD99|4267|CD99 molecule##NM_002414|CD99|4267|CD99 molecule##BC024310|CD99|4267|CD99 molecule##X16996|CD99|4267|CD99 molecule##BC002584|CD99|4267|CD99 molecule##AK313617|CD99|4267|CD99 molecule##BC003147|CD99|4267|CD99 molecule##BC021620|CD99|4267|CD99 molecule##DQ891912|CD99|4267|CD99 molecule##CR450286|CD99|4267|CD99 molecule##U82164|CD99|4267|CD99 molecule##BC019696|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ891613|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##DQ894805|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AJ293620|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AY358849|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC032340|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##AB018328|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171136|ZBED1|9189|zinc finger, BED-type containing 1##NM_004729|ZBED1|9189|zinc finger, BED-type containing 1##NM_145177|DHRSX|207063|dehydrogenase/reductase (SDR family) X-linked##BC015030|ZBED1|9189|zinc finger, BED-type containing 1##NM_001171135|ZBED1|9189|zinc finger, BED-type containing 1##S56543|SRY|6736|sex determining region Y##S53156|SRY|6736|sex determining region Y##EU446863|SRY|6736|sex determining region Y##BC074923|SRY|6736|sex determining region Y##BC074924|SRY|6736|sex determining region Y##L10101|SRY|6736|sex determining region Y##NM_003140|SRY|6736|sex determining region Y##NM_001008|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##AK292819|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##AK222594|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##BC010286|RPS4Y1|6192|ribosomal protein S4, Y-linked 1##M58459|RPS4Y1|6192|ribosomal protein S4, Y-linked 1	1.047998	0.0	denovo_WM_7:-75:0.225	denovo_WM_7:-78:0.624
chr1	174992541	174992644	reg1007828.p1	5.291	+	TSC_hg19_v1_chr1_-_174992572 BC009788 AK310915 AK311759 AL049705 NM_022100	-21	-	TSC_hg19_v1_chr1_+_174969165 BC005865 AK294042 AF314752 BC022352 AL035305 AF057356 BC067823 BC078151 AF275803 AY423723	-23382	+	AK313278 TSC_hg19_v1_chr1_+_174969103	-23491	+	AK127044 NM_022093	44401	+	D25539 BC032361 BC111699 BC050374 BC008952 BC020789 AL049799 AK292691 NM_001162895 NM_014656 AL049800 NM_001162893 NM_001162894	169438	-	AK295823 TSC_hg19_v1_chr1_-_175712727 NM_003285	720118	-	BC009788|MRPS14|63931|mitochondrial ribosomal protein S14##AK310915|MRPS14|63931|mitochondrial ribosomal protein S14##AK311759|MRPS14|63931|mitochondrial ribosomal protein S14##AL049705|MRPS14|63931|mitochondrial ribosomal protein S14##NM_022100|MRPS14|63931|mitochondrial ribosomal protein S14##AK294042|CACYBP|27101|calcyclin binding protein##AF314752|CACYBP|27101|calcyclin binding protein##BC022352|CACYBP|27101|calcyclin binding protein##AL035305|CACYBP|27101|calcyclin binding protein##AF057356|CACYBP|27101|calcyclin binding protein##BC067823|CACYBP|27101|calcyclin binding protein##BC078151|CACYBP|27101|calcyclin binding protein##AF275803|CACYBP|27101|calcyclin binding protein##AY423723|CACYBP|27101|calcyclin binding protein##AK313278|CACYBP|27101|calcyclin binding protein##AK127044|TNN|63923|tenascin N##NM_022093|TNN|63923|tenascin N##D25539|KIAA0040|9674|KIAA0040##BC032361|KIAA0040|9674|KIAA0040##BC111699|KIAA0040|9674|KIAA0040##BC050374|KIAA0040|9674|KIAA0040##BC020789|KIAA0040|9674|KIAA0040##AL049799|KIAA0040|9674|KIAA0040##AK292691|KIAA0040|9674|KIAA0040##NM_001162895|KIAA0040|9674|KIAA0040##NM_014656|KIAA0040|9674|KIAA0040##AL049800|KIAA0040|9674|KIAA0040##NM_001162893|KIAA0040|9674|KIAA0040##NM_001162894|KIAA0040|9674|KIAA0040##AK295823|TNR|7143|tenascin R (restrictin, janusin)##NM_003285|TNR|7143|tenascin R (restrictin, janusin)	0.0	0.0	
chr12	53488409	53488565	reg1007543.p1	5.291	+	TSC_hg19_v1_chr12_-_53473175 AK294092 NM_032840	-15300	-	TSC_hg19_v1_chr12_-_53473167 AK074694	-15319	-	BC136312 AK027706 TSC_hg19_v1_chr12_-_53473165	-15338	-	TSC_hg19_v1_chr12_+_53491420 NM_002178 BC010162	2940	+	M62402 TSC_hg19_v1_chr12_+_53491450 AK313158 BC003507 BC011708 BC005007 DQ892995 DQ896243 AB528507 CR541791 M69054	2990	+	NM_003578 TSC_hg19_v1_chr12_+_53497278	8788	+	AK294092|SPRYD3|84926|SPRY domain containing 3##NM_032840|SPRYD3|84926|SPRY domain containing 3##AK074694|SPRYD3|84926|SPRY domain containing 3##BC136312|SPRYD3|84926|SPRY domain containing 3##AK027706|SPRYD3|84926|SPRY domain containing 3##NM_002178|IGFBP6|3489|insulin-like growth factor binding protein 6##BC010162|IGFBP6|3489|insulin-like growth factor binding protein 6##M62402|IGFBP6|3489|insulin-like growth factor binding protein 6##AK313158|IGFBP6|3489|insulin-like growth factor binding protein 6##BC003507|IGFBP6|3489|insulin-like growth factor binding protein 6##BC011708|IGFBP6|3489|insulin-like growth factor binding protein 6##BC005007|IGFBP6|3489|insulin-like growth factor binding protein 6##DQ892995|IGFBP6|3489|insulin-like growth factor binding protein 6##DQ896243|IGFBP6|3489|insulin-like growth factor binding protein 6##CR541791|IGFBP6|3489|insulin-like growth factor binding protein 6##M69054|IGFBP6|3489|insulin-like growth factor binding protein 6##NM_003578|SOAT2|8435|sterol O-acyltransferase 2	1.96872	0.0	denovo_WM_7:12:0.298	denovo_WM_7:13:0.240	denovo_WM_7:30:0.242	denovo_WM_7:31:0.299
chr14	75348097	75348277	reg1008996.p1	5.291	+	BC105720 BC105721 BC105927 NM_001080408 NM_001243007	-17652	-	TSC_hg19_v1_chr14_+_75283667 BC023570	-64487	+	TSC_hg19_v1_chr14_+_75230066 AK095760 NM_019589	-118155	+	TSC_hg19_v1_chr14_+_75348624 NM_001244883 NM_001933 AK289414 BX248276 AK299505 AK316463 AK300396 BC000302 BC001922 BC002735 BX248764 D16373 CR456727 CU674146 L37418 BX248774	438	+	NM_031464	40957	-	TSC_hg19_v1_chr14_-_75389964 BC036574 AK226137 AK054800	41766	-	BC105720|PROX2|283571|prospero homeobox 2##BC105721|PROX2|283571|prospero homeobox 2##BC105927|PROX2|283571|prospero homeobox 2##NM_001080408|PROX2|283571|prospero homeobox 2##NM_001243007|PROX2|283571|prospero homeobox 2##BC023570|YLPM1|56252|YLP motif containing 1##AK095760|YLPM1|56252|YLP motif containing 1##NM_019589|YLPM1|56252|YLP motif containing 1##NM_001244883|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_001933|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK289414|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248276|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK299505|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK316463|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK300396|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC000302|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC001922|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC002735|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248764|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##D16373|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##CR456727|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##L37418|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248774|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_031464|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##BC036574|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK226137|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK054800|RPS6KL1|83694|ribosomal protein S6 kinase-like 1	0.994822	0.0	denovo_WM_7:-52:0.736
chr14	96118915	96119095	reg1003717.p1	5.291	+	TSC_hg19_v1_chr14_+_96001402 DQ083331	-117572	+	AB223038 TSC_hg19_v1_chr14_+_96001383	-117622	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	-117637	+	BC051000 NM_004918 AF137027 AB018563 AF110466 BC041616 AB590931 CR457087	33773	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	61462	-	AK023027 TSC_hg19_v1_chr14_+_96342762	223740	+	DQ083331|GLRX5|51218|glutaredoxin 5##AB223038|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5##BC051000|TCL1B|9623|T-cell leukemia/lymphoma 1B##NM_004918|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF137027|TCL1B|9623|T-cell leukemia/lymphoma 1B##AB018563|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF110466|TCL1B|9623|T-cell leukemia/lymphoma 1B##BC041616|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR457087|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##AK023027|LOC100507043|100507043|uncharacterized LOC100507043	1.067897	0.0	
chr18	24226827	24226948	reg1008978.p2	5.291	+	AF542549 NM_198991	-6580	-	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	-97646	-	NM_001142730 TSC_hg19_v1_chr18_-_24128518	-98377	-	U63623 NM_004028	215667	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	218829	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	495992	-	AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1##AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##U63623|AQP4|361|aquaporin 4##NM_004028|AQP4|361|aquaporin 4##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	0.929345	0.0	denovo_WM_7:-26:0.574
chr2	175358651	175358783	reg1000242.p3	5.291	+	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-6920	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-98159	+	TSC_hg19_v1_chr2_+_175260466 NM_001193528 NM_024583 AK296558 AK295357 AK295357 AK057912 AK057912 BC007344	-98240	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	103764	-	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	140580	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	189037	-	BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##NM_001193528|SCRN3|79634|secernin 3##NM_024583|SCRN3|79634|secernin 3##AK296558|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1	0.99034	0.0	denovo_WM_7:-1:0.233	denovo_WM_7:-2:0.233	denovo_WM_7:-3:0.233	denovo_WM_7:-4:0.233
chr9	80825982	80826122	reg1008923.p1	5.291	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	-179868	-	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-562821	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-857704	+	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	24978	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	86006	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	1360834	+	AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)	0.321008	0.0	denovo_WM_7:5:0.321
chr1	1186618	1186780	reg1009821.p2	5.290	+	BC089443 NM_001014980	-4598	-	TSC_hg19_v1_chr1_+_1167622 NM_080605 BC051719	-19022	+	TSC_hg19_v1_chr1_-_1167426 NM_016176 NM_016547	-19266	-	BC104890 BC113430 BC143657 TSC_hg19_v1_chr1_-_1209214 AF296658 AK075017 AK291935	22438	-	TSC_hg19_v1_chr1_-_1209229 BC094777 NM_058167 NM_194315 NM_194457 NM_194458	22531	-	TSC_hg19_v1_chr1_+_1209415 DQ898177	22701	+	BC089443|FAM132A|388581|family with sequence similarity 132, member A##NM_001014980|FAM132A|388581|family with sequence similarity 132, member A##NM_080605|B3GALT6|126792|UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6##BC051719|B3GALT6|126792|UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6##NM_016176|SDF4|51150|stromal cell derived factor 4##NM_016547|SDF4|51150|stromal cell derived factor 4##BC104890|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##BC113430|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##BC143657|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##AF296658|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##AK075017|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##AK291935|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##BC094777|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##NM_058167|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##NM_194315|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##NM_194457|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2##NM_194458|UBE2J2|118424|ubiquitin-conjugating enzyme E2, J2	0.999776	0.0	denovo_WM_7:45:0.457	denovo_WM_7:46:0.457
chr11	86529582	86529706	reg1008004.p1	5.290	+	NM_007173 TSC_hg19_v1_chr11_+_86511583 AK316508 AK075362 AK315562 AK304301 AK304054 BC063022 AL136914 BC001278 AF015287 AF193611 AY359033	-18092	+	TSC_hg19_v1_chr11_-_86383659 AK300974 NM_001161586	-145979	-	X79440 TSC_hg19_v1_chr11_-_86383470 NM_006680 AK313695	-146202	-	TSC_hg19_v1_chr11_-_86666094 AY462097	136463	-	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	136744	-	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	219334	+	NM_007173|PRSS23|11098|protease, serine, 23##AK075362|PRSS23|11098|protease, serine, 23##AK315562|PRSS23|11098|protease, serine, 23##AK304301|PRSS23|11098|protease, serine, 23##AK304054|PRSS23|11098|protease, serine, 23##AL136914|PRSS23|11098|protease, serine, 23##BC001278|PRSS23|11098|protease, serine, 23##AF015287|PRSS23|11098|protease, serine, 23##AF193611|PRSS23|11098|protease, serine, 23##AY359033|PRSS23|11098|protease, serine, 23##AK300974|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##NM_001161586|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##X79440|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##NM_006680|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##AK313695|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##AY462097|FZD4|8322|frizzled family receptor 4##BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135	0.0	0.903817	CTCF.p2:66:0.904
chr2	177358109	177358234	reg1009643.p1	5.290	+	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-223932	+	AF241528 NM_024501 TSC_hg19_v1_chr2_+_177053395 AK314120 BC014477 BC028190 DQ892237 DQ895437 AB464583	-304755	+	BC005124 NM_006898	-329367	+	BC013438 TSC_hg19_v1_chr2_-_177502718	144517	-	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	719303	+	AK311688 NM_001145412 NM_001145413	770400	-	NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AF241528|HOXD1|3231|homeobox D1##NM_024501|HOXD1|3231|homeobox D1##AK314120|HOXD1|3231|homeobox D1##BC014477|HOXD1|3231|homeobox D1##BC028190|HOXD1|3231|homeobox D1##DQ892237|HOXD1|3231|homeobox D1##DQ895437|HOXD1|3231|homeobox D1##BC005124|HOXD3|3232|homeobox D3##NM_006898|HOXD3|3232|homeobox D3##BC013438|LOC375295|375295|uncharacterized LOC375295##NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	0.0	0.0	
chrX	9834029	9834187	reg1006976.p1	5.290	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-79565	+	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	-79628	+	Z48804 BC015657 BC068977 NM_000273	-100148	-	NM_001195081	101289	+	BC098455 NM_015691	149685	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	290946	+	BC140866|SHROOM2|357|shroom family member 2##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4	0.997794	0.0	
chr18	49709542	49709672	reg1008529.p2	5.289	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-985567	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-985895	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-986381	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	156934	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	157506	+	TSC_hg19_v1_chr18_-_51690988 AL110266	1981385	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	0.988517	0.0	denovo_WM_7:-41:0.841
chr5	116244442	116244528	reg1008081.p1	5.289	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-333971	-	TSC_hg19_v1_chr5_+_115898220 D28352	-346261	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-823764	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2079753	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2162326	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2162680	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.070339	0.0	
chr2	43336478	43336638	reg1010624.p1	5.288	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	-316807	-	AY158687 AB528920 AB083055 BC063549 NM_148962	-345258	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-540661	+	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	116787	-	TSC_hg19_v1_chr2_-_43453736 BC020369	117172	-	TSC_hg19_v1_chr2_-_43453744 NM_006887	117184	-	CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.985475	0.0	denovo_WM_7:-3:0.473	denovo_WM_7:-4:0.422
chr1	212407898	212408026	reg1001590.p1	5.287	+	TSC_hg19_v1_chr1_+_212209137 AF195765 AK299649 BC033297 AK027651 CU689622 CU689648 DQ641253	-198782	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	-198844	+	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	-198948	+	TSC_hg19_v1_chr1_+_212458776 AK312530	50816	+	TSC_hg19_v1_chr1_+_212458867 L42373 NM_006243	50910	+	BC110883 TSC_hg19_v1_chr1_+_212459259	51252	+	AF195765|DTL|51514|denticleless homolog (Drosophila)##AK299649|DTL|51514|denticleless homolog (Drosophila)##BC033297|DTL|51514|denticleless homolog (Drosophila)##AK027651|DTL|51514|denticleless homolog (Drosophila)##DQ641253|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##AK312530|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##L42373|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##NM_006243|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC110883|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha	0.0	0.0	
chr21	47637152	47637288	reg1009163.p1	5.287	+	TSC_hg19_v1_chr21_-_47604362 AK309847 AK304535 NM_001142854 NM_032261	-32845	-	TSC_hg19_v1_chr21_-_47604340 BC084577	-32874	-	AL136871 TSC_hg19_v1_chr21_-_47604330	-32904	-	X87809 TSC_hg19_v1_chr21_-_47648594	11285	-	TSC_hg19_v1_chr21_-_47648618 AK226141 CU690148 DQ891234 DQ894418	11422	-	TSC_hg19_v1_chr21_-_47648679 D63807 S81221 BC035638	11457	-	AK309847|C21orf56|84221|chromosome 21 open reading frame 56##AK304535|C21orf56|84221|chromosome 21 open reading frame 56##NM_001142854|C21orf56|84221|chromosome 21 open reading frame 56##NM_032261|C21orf56|84221|chromosome 21 open reading frame 56##BC084577|C21orf56|84221|chromosome 21 open reading frame 56##AL136871|C21orf56|84221|chromosome 21 open reading frame 56##X87809|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK226141|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##DQ891234|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##DQ894418|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##D63807|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##S81221|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##BC035638|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	1.912711	0.0	denovo_WM_7:-39:0.634	denovo_WM_7:-54:0.865
chr12	105777230	105777348	reg1009321.p1	5.286	+	AJ311378 TSC_hg19_v1_chr12_+_105724640	-52650	+	TSC_hg19_v1_chr12_+_105724468 BC013920 NM_001145199 BC067897 BC045812 BC061920 AK056999 AJ311377	-52818	+	CU689714 AB527678 DQ892107 DQ895301 TSC_hg19_v1_chr12_-_105629989 AK001521 AK290562 AK297100 BC033731 BC028008 AY113704 NM_001251904 NM_018171	-147379	-	TSC_hg19_v1_chr12_-_106532646 AK289992 AK027302	755393	-	AB011109 BC152462 NM_014840	756521	-	BC067357 BC082972 TSC_hg19_v1_chr12_-_106641928 NM_006825 X69910 BC094824 BC037578 AK223563 AK123693 BC025341	864558	-	AJ311378|C12orf75|387882|chromosome 12 open reading frame 75##BC013920|C12orf75|387882|chromosome 12 open reading frame 75##NM_001145199|C12orf75|387882|chromosome 12 open reading frame 75##BC067897|C12orf75|387882|chromosome 12 open reading frame 75##BC045812|C12orf75|387882|chromosome 12 open reading frame 75##BC061920|C12orf75|387882|chromosome 12 open reading frame 75##AK056999|C12orf75|387882|chromosome 12 open reading frame 75##AJ311377|C12orf75|387882|chromosome 12 open reading frame 75##DQ892107|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ895301|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK001521|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK290562|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK297100|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC033731|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC028008|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AY113704|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251904|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_018171|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK289992|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK027302|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AB011109|NUAK1|9891|NUAK family, SNF1-like kinase, 1##BC152462|NUAK1|9891|NUAK family, SNF1-like kinase, 1##NM_014840|NUAK1|9891|NUAK family, SNF1-like kinase, 1##BC067357|CKAP4|10970|cytoskeleton-associated protein 4##BC082972|CKAP4|10970|cytoskeleton-associated protein 4##NM_006825|CKAP4|10970|cytoskeleton-associated protein 4##X69910|CKAP4|10970|cytoskeleton-associated protein 4##BC094824|CKAP4|10970|cytoskeleton-associated protein 4##BC037578|CKAP4|10970|cytoskeleton-associated protein 4##AK223563|CKAP4|10970|cytoskeleton-associated protein 4##AK123693|CKAP4|10970|cytoskeleton-associated protein 4##BC025341|CKAP4|10970|cytoskeleton-associated protein 4	0.0	0.961795	CTCF.p2:21:0.962
chr5	141736023	141736203	reg1007625.p2	5.285	+	TSC_hg19_v1_chr5_-_141704587 AK096464 NM_001127496 NM_030964	-31479	-	BC125095 BC125096 TSC_hg19_v1_chr5_-_141704555 AF227516 AF227517	-31593	-	TSC_hg19_v1_chr5_+_141488389 AB097010 AB097037 BC004317	-247703	+	S67291 S67292 S67294 AB528663 X65778 X65779 M13361 NM_033137 X51943	257595	-	L01487 BC032697 NM_001144892	264789	-	M60516 NM_000800	329506	-	AK096464|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_001127496|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_030964|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125095|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125096|SPRY4|81848|sprouty homolog 4 (Drosophila)##AF227516|SPRY4|81848|sprouty homolog 4 (Drosophila)##AB097010|NDFIP1|80762|Nedd4 family interacting protein 1##AB097037|NDFIP1|80762|Nedd4 family interacting protein 1##BC004317|NDFIP1|80762|Nedd4 family interacting protein 1##S67291|FGF1|2246|fibroblast growth factor 1 (acidic)##S67292|FGF1|2246|fibroblast growth factor 1 (acidic)##S67294|FGF1|2246|fibroblast growth factor 1 (acidic)##X65778|FGF1|2246|fibroblast growth factor 1 (acidic)##X65779|FGF1|2246|fibroblast growth factor 1 (acidic)##M13361|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_033137|FGF1|2246|fibroblast growth factor 1 (acidic)##X51943|FGF1|2246|fibroblast growth factor 1 (acidic)##L01487|FGF1|2246|fibroblast growth factor 1 (acidic)##BC032697|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144892|FGF1|2246|fibroblast growth factor 1 (acidic)##M60516|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_000800|FGF1|2246|fibroblast growth factor 1 (acidic)	0.990387	0.0	
chr8	132258202	132258337	reg1010218.p1	5.285	+	NM_001115	-205435	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	-802238	-	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-1229386	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	658088	+	TSC_hg19_v1_chr8_+_132916379 BC108667	658108	+	AK307433 TSC_hg19_v1_chr8_+_132916394	658121	+	NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC108667|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##AK307433|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.0	0.463371	CTCF.p2:-16:0.463
chr10	49875839	49875982	reg1005471.p1	5.284	+	TSC_hg19_v1_chr10_-_49864302 AK055937	-11605	-	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	-62823	-	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	-266238	+	TSC_hg19_v1_chr10_+_49892917 BC034937	16980	+	AK127650 NM_020945	17605	+	NM_001006939 BC036722	246370	-	AK055937|ARHGAP22|58504|Rho GTPase activating protein 22##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##BC034937|WDFY4|57705|WDFY family member 4##AK127650|WDFY4|57705|WDFY family member 4##NM_020945|WDFY4|57705|WDFY family member 4##NM_001006939|LRRC18|474354|leucine rich repeat containing 18##BC036722|LRRC18|474354|leucine rich repeat containing 18	0.998167	0.0	
chr1	23888486	23888609	reg1007728.p1	5.284	+	NM_002167 X69111	-2263	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-2563	-	L22846 NM_004091	-30836	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	129733	+	TSC_hg19_v1_chr1_+_24018295 BC018970	129752	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	181357	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.994315	0.0	
chr15	31621031	31621211	reg1007403.p1	5.284	+	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	-1783	+	NM_001243538	-98072	-	GQ502181 HM135791 NM_001252020	-167693	-	AJ430383 NM_130901	326420	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	541708	-	TSC_hg19_v1_chr15_-_32162898 AK126002	541822	-	AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##AK126002|OTUD7A|161725|OTU domain containing 7A	0.0	0.0	
chr5	80450816	80450920	reg1004201.p2	5.284	+	AF023130 AF181250 TSC_hg19_v1_chr5_+_80256561	-194309	+	TSC_hg19_v1_chr5_+_80256463 BC126112 BC136296 BC143870 NM_006909	-194386	+	TSC_hg19_v1_chr5_-_79950786 BC003584 BC071996 NM_000791	-500073	-	NM_001099735 NM_001099736 NM_001825 TSC_hg19_v1_chr5_+_80529140 AK313293 BC029140 AK122769	78280	+	TSC_hg19_v1_chr5_-_80597338 AK096014	146457	-	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	146504	-	AF023130|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##AF181250|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC126112|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC136296|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC143870|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##NM_006909|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC003584|DHFR|1719|dihydrofolate reductase##BC071996|DHFR|1719|dihydrofolate reductase##NM_000791|DHFR|1719|dihydrofolate reductase##NM_001099735|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##NM_001099736|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##NM_001825|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK313293|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##BC029140|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK122769|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK096014|LOC100131067|100131067|uncharacterized LOC100131067##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067	0.031331	0.0	
chr19	12731464	12731591	reg1008606.p2	5.283	+	AK307775 NM_153358 AK298597 TSC_hg19_v1_chr19_+_12721749 AX721060 AK074877 AK297715 BC106937 BC106938	-9763	+	AB385437 CU691590 EU446833 BC038586 AB033024 NM_020714 TSC_hg19_v1_chr19_-_12721628	-9966	-	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	-69254	-	TSC_hg19_v1_chr19_-_12777530 U68382 U68567 AB209921 DQ891878 DQ895066 AB527181 U60266 BC000736	45985	-	TSC_hg19_v1_chr19_-_12777557 U05572 AK291572 AK303418 NM_000528 NM_001173498	46038	-	TSC_hg19_v1_chr19_+_12777620 NM_001099737 AK074525 AK314164	46109	+	AK307775|ZNF791|163049|zinc finger protein 791##NM_153358|ZNF791|163049|zinc finger protein 791##AK298597|ZNF791|163049|zinc finger protein 791##AK074877|ZNF791|163049|zinc finger protein 791##AK297715|ZNF791|163049|zinc finger protein 791##BC106937|ZNF791|163049|zinc finger protein 791##BC106938|ZNF791|163049|zinc finger protein 791##EU446833|ZNF490|57474|zinc finger protein 490##BC038586|ZNF490|57474|zinc finger protein 490##AB033024|ZNF490|57474|zinc finger protein 490##NM_020714|ZNF490|57474|zinc finger protein 490##BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564##U68382|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U68567|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AB209921|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ891878|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ895066|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U60266|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##BC000736|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U05572|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AK291572|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AK303418|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_000528|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_001173498|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_001099737|WDR83|84292|WD repeat domain 83##AK074525|WDR83|84292|WD repeat domain 83##AK314164|WDR83|84292|WD repeat domain 83	1.008982	0.0	
chr2	202122176	202122303	reg1007518.p1	5.283	+	NM_001080124 NM_001228 NM_033355 NM_033358 AF422927 AF422928 BC010390 AK310630 BC017031 U60520 X98176	-24014	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	-74379	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	-74619	+	NM_001080125 AF422926 BC068050 AF422925 AF422929 X98172 AY429525	558	+	NM_033356 X98173	3017	+	AK124115 BC031603 NM_001127391 NM_139163 AK292283	99854	-	NM_001080124|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001228|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033355|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033358|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422927|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422928|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC010390|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310630|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC017031|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##U60520|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98176|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001080125|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422926|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC068050|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422929|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98172|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033356|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98173|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK124115|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##BC031603|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_001127391|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_139163|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##AK292283|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12	0.998362	0.0	denovo_WM_7:-26:0.494	denovo_WM_7:-27:0.494
chr3	39062545	39062660	reg1007119.p2	5.283	+	AF109737 AF150882 NM_014139	-70551	-	AF117907 NM_006514	-227102	-	M77235 NM_000335 NM_001099404 NM_001099405 NM_198056 BC051374 NM_001160160 NM_001160161	-371462	-	TSC_hg19_v1_chr3_+_39093498 AB040882 AK025513 AK297349 AK298810 AK302307 BC026353 NM_020839 BC037168 AB385469 AF468833 AL832926	30899	+	CU687304 AB527597 TSC_hg19_v1_chr3_-_39149103 BC064624 AK300271 BC103826 BC103827 BC008928	86469	-	TSC_hg19_v1_chr3_-_39149122 BC075854 AK001574 AK057043 AJ409349 NM_031899 AK303847	86524	-	AF109737|SCN11A|11280|sodium channel, voltage-gated, type XI, alpha subunit##AF150882|SCN11A|11280|sodium channel, voltage-gated, type XI, alpha subunit##NM_014139|SCN11A|11280|sodium channel, voltage-gated, type XI, alpha subunit##AF117907|SCN10A|6336|sodium channel, voltage-gated, type X, alpha subunit##NM_006514|SCN10A|6336|sodium channel, voltage-gated, type X, alpha subunit##M77235|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_000335|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001099404|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001099405|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_198056|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##BC051374|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001160160|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001160161|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##AB040882|WDR48|57599|WD repeat domain 48##AK025513|WDR48|57599|WD repeat domain 48##AK297349|WDR48|57599|WD repeat domain 48##AK298810|WDR48|57599|WD repeat domain 48##AK302307|WDR48|57599|WD repeat domain 48##BC026353|WDR48|57599|WD repeat domain 48##NM_020839|WDR48|57599|WD repeat domain 48##BC037168|WDR48|57599|WD repeat domain 48##AF468833|WDR48|57599|WD repeat domain 48##AL832926|WDR48|57599|WD repeat domain 48##BC064624|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK300271|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC103826|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC103827|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC008928|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##BC075854|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK001574|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK057043|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AJ409349|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##NM_031899|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa##AK303847|GORASP1|64689|golgi reassembly stacking protein 1, 65kDa	0.992786	0.0	denovo_WM_7:-62:0.842
chr1	200076363	200076502	reg1009951.p2	5.282	+	AK316513 TSC_hg19_v1_chr1_+_200011716	-64708	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	-79563	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-1169885	-	NM_001105517	106223	+	AK021707 TSC_hg19_v1_chr1_-_200377270	300837	-	TSC_hg19_v1_chr1_-_200377488 AK022921	301106	-	AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene##AK021707|ZNF281|23528|zinc finger protein 281##AK022921|ZNF281|23528|zinc finger protein 281	0.981098	0.0	denovo_WM_7:4:0.410	denovo_WM_7:5:0.431
chr2	236654941	236655059	reg1004405.p1	5.282	+	TSC_hg19_v1_chr2_+_236403297 AB384114 AF413078	-251690	+	TSC_hg19_v1_chr2_+_236402950 BC140856	-252023	+	TSC_hg19_v1_chr2_+_236402701 NM_001037131 NM_001244888 NM_014914 BC060814 BC167157 AB029022 BC167153 AY033765	-252197	+	AK311262 TSC_hg19_v1_chr2_-_237076045	421014	-	AB463673 AF118452 BC114458 BC137448 BC137449 BC141861 BC144646 NM_001485	421632	-	NM_212556 BX647589	517994	-	AF413078|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC140856|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001037131|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001244888|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_014914|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC060814|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167157|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AB029022|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167153|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AY033765|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AF118452|GBX2|2637|gastrulation brain homeobox 2##BC137448|GBX2|2637|gastrulation brain homeobox 2##BC137449|GBX2|2637|gastrulation brain homeobox 2##NM_001485|GBX2|2637|gastrulation brain homeobox 2##NM_212556|ASB18|401036|ankyrin repeat and SOCS box containing 18##BX647589|ASB18|401036|ankyrin repeat and SOCS box containing 18	2.981672	0.0	denovo_WM_7:29:0.301	denovo_WM_7:30:0.243	denovo_WM_7:47:0.244	denovo_WM_7:48:0.302	denovo_WM_7:-57:0.851
chr14	54080438	54080522	reg1001335.p2	5.281	+	TSC_hg19_v1_chr14_-_53620035 NM_001160147 NM_001160148 NM_030637	-460430	-	TSC_hg19_v1_chr14_-_53619974 DQ315474 GU376468 BC030703	-460512	-	TSC_hg19_v1_chr14_-_53619887 AK125372	-460607	-	NM_130851	340789	-	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	343053	-	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	783241	+	NM_001160147|DDHD1|80821|DDHD domain containing 1##NM_001160148|DDHD1|80821|DDHD domain containing 1##NM_030637|DDHD1|80821|DDHD domain containing 1##DQ315474|DDHD1|80821|DDHD domain containing 1##GU376468|DDHD1|80821|DDHD domain containing 1##BC030703|DDHD1|80821|DDHD domain containing 1##AK125372|DDHD1|80821|DDHD domain containing 1##NM_130851|BMP4|652|bone morphogenetic protein 4##BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3	0.0	0.0	
chr17	62833953	62834115	reg1008657.p2	5.281	+	TSC_hg19_v1_chr17_-_62833274 AK308180 AK303621 AL833315	-764	-	TSC_hg19_v1_chr17_-_62833261 BC034693 BC041324	-780	-	TSC_hg19_v1_chr17_-_62833238 AK301174 AK304173	-801	-	AB384498 TSC_hg19_v1_chr17_-_62893379 BC043145 BC048966	59357	-	AB011135 NM_199340	80868	-	TSC_hg19_v1_chr17_-_62915587 AK294371	81562	-	AK308180|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##AK303621|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##AL833315|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##BC034693|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##AK301174|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##AK304173|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##BC043145|LRRC37A3|374819|leucine rich repeat containing 37, member A3##BC048966|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AB011135|LRRC37A3|374819|leucine rich repeat containing 37, member A3##NM_199340|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3	1.143578	0.0	denovo_WM_7:66:0.209	denovo_WM_7:67:0.209
chr6	74270807	74270958	reg1001196.p2	5.281	+	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-40136	-	TSC_hg19_v1_chr6_-_74230163 AY043301	-40712	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	-41713	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	92748	-	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	92898	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	134683	+	BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule	0.0	0.0	
chr11	128342004	128342134	reg1008925.p1	5.279	+	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1468764	+	TSC_hg19_v1_chr11_-_126870685 AY358743 NM_001161707 NM_032531	-1471344	-	AB058770 BC071838 TSC_hg19_v1_chr11_-_126870667	-1471409	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	49894	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	50065	-	BX640634 NM_001143820	115383	-	BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##AY358743|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_001161707|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_032531|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AB058770|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##BC071838|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	0.812191	0.0	denovo_WM_7:-2:0.713
chr2	3657023	3657143	reg1002904.p2	5.279	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-14514	+	X74803 TSC_hg19_v1_chr2_+_3627765	-29338	+	TSC_hg19_v1_chr2_+_3623128 BC071919 AB464168 DQ892985 DQ896234 M77233 AF085824	-33918	+	AK302299 NM_018436 BC029652	48714	+	U23752 AB028641 NM_003108 BC025789 AB464713	2175732	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	3348817	-	AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##X74803|RPS7|6201|ribosomal protein S7##BC071919|RPS7|6201|ribosomal protein S7##DQ892985|RPS7|6201|ribosomal protein S7##DQ896234|RPS7|6201|ribosomal protein S7##M77233|RPS7|6201|ribosomal protein S7##AF085824|RPS7|6201|ribosomal protein S7##AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	0.294816	0.0	denovo_WM_7:46:0.215
chr17	7036607	7036746	reg1006477.p2	5.278	+	X55283 TSC_hg19_v1_chr17_-_7018083 BC017251 NM_001181 NM_001201352 NM_080912 NM_080913 AK310123 AK303787	-18506	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	-18687	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	-19083	-	BC032130 TSC_hg19_v1_chr17_-_7082568	45888	-	M10058 AB070933 TSC_hg19_v1_chr17_-_7082680 AK308375 AK124286 NM_001197216 NM_001671	46092	-	TSC_hg19_v1_chr17_-_7106561 BC040533	69918	-	X55283|ASGR2|433|asialoglycoprotein receptor 2##BC017251|ASGR2|433|asialoglycoprotein receptor 2##NM_001181|ASGR2|433|asialoglycoprotein receptor 2##NM_001201352|ASGR2|433|asialoglycoprotein receptor 2##NM_080912|ASGR2|433|asialoglycoprotein receptor 2##NM_080913|ASGR2|433|asialoglycoprotein receptor 2##AK310123|ASGR2|433|asialoglycoprotein receptor 2##AK303787|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##BC032130|ASGR1|432|asialoglycoprotein receptor 1##M10058|ASGR1|432|asialoglycoprotein receptor 1##AB070933|ASGR1|432|asialoglycoprotein receptor 1##AK308375|ASGR1|432|asialoglycoprotein receptor 1##AK124286|ASGR1|432|asialoglycoprotein receptor 1##NM_001197216|ASGR1|432|asialoglycoprotein receptor 1##NM_001671|ASGR1|432|asialoglycoprotein receptor 1##BC040533|DLG4|1742|discs, large homolog 4 (Drosophila)	1.852001	0.0	denovo_WM_7:11:0.753	denovo_WM_7:26:0.645	denovo_WM_7:27:0.221
chr18	3759227	3759336	reg1008518.p1	5.278	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-165139	+	NM_173211	-305510	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-307650	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	86049	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	115003	-	AK294777 AK294717 NM_001242762 NM_001242763	115446	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.993461	0.0	denovo_WM_7:-15:0.946
chr8	9530152	9530286	reg1009214.p1	5.278	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	-116738	+	TSC_hg19_v1_chr8_+_9413423 AK302031	-116796	+	TSC_hg19_v1_chr8_+_9413421 BC098394	-116814	+	TSC_hg19_v1_chr8_+_9911765 AY958429	381550	+	TSC_hg19_v1_chr8_+_9911861 AJ242973 BC054033 NM_001135670 NM_012331 AF086925 AF183420	381660	+	AK293488 AY958430 AY958431 BC047552 NM_001135671 NM_001199729	422844	+	BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AY958429|MSRA|4482|methionine sulfoxide reductase A##AJ242973|MSRA|4482|methionine sulfoxide reductase A##BC054033|MSRA|4482|methionine sulfoxide reductase A##NM_001135670|MSRA|4482|methionine sulfoxide reductase A##NM_012331|MSRA|4482|methionine sulfoxide reductase A##AF086925|MSRA|4482|methionine sulfoxide reductase A##AF183420|MSRA|4482|methionine sulfoxide reductase A##AK293488|MSRA|4482|methionine sulfoxide reductase A##AY958430|MSRA|4482|methionine sulfoxide reductase A##AY958431|MSRA|4482|methionine sulfoxide reductase A##BC047552|MSRA|4482|methionine sulfoxide reductase A##NM_001135671|MSRA|4482|methionine sulfoxide reductase A##NM_001199729|MSRA|4482|methionine sulfoxide reductase A	1.994387	0.0	denovo_WM_7:10:0.353	denovo_WM_7:11:0.546
chr9	100866147	100866269	reg1010846.p1	5.278	+	TSC_hg19_v1_chr9_+_100819020 NM_018946 AK316608 BC000008 AK001659 BC019315 AF257466 CU676426 DQ892167 DQ895361	-47193	+	TSC_hg19_v1_chr9_+_100745672 Y07569	-120481	+	TSC_hg19_v1_chr9_+_100745652 BC019658 Y07570 BC013003	-120556	+	TSC_hg19_v1_chr9_-_100881503 AB529155 DQ893293 DQ896623 AF220130 AF220131 D50919 NM_014788 NM_033219 BC006333 NM_033220 AK292825	15277	-	TSC_hg19_v1_chr9_-_100881526 AK055833	15336	-	NM_003389	68965	-	NM_018946|NANS|54187|N-acetylneuraminic acid synthase##AK316608|NANS|54187|N-acetylneuraminic acid synthase##BC000008|NANS|54187|N-acetylneuraminic acid synthase##AK001659|NANS|54187|N-acetylneuraminic acid synthase##BC019315|NANS|54187|N-acetylneuraminic acid synthase##AF257466|NANS|54187|N-acetylneuraminic acid synthase##DQ892167|NANS|54187|N-acetylneuraminic acid synthase##DQ895361|NANS|54187|N-acetylneuraminic acid synthase##Y07569|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC019658|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##Y07570|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC013003|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##DQ893293|TRIM14|9830|tripartite motif containing 14##DQ896623|TRIM14|9830|tripartite motif containing 14##AF220130|TRIM14|9830|tripartite motif containing 14##AF220131|TRIM14|9830|tripartite motif containing 14##D50919|TRIM14|9830|tripartite motif containing 14##NM_014788|TRIM14|9830|tripartite motif containing 14##NM_033219|TRIM14|9830|tripartite motif containing 14##BC006333|TRIM14|9830|tripartite motif containing 14##NM_033220|TRIM14|9830|tripartite motif containing 14##AK292825|TRIM14|9830|tripartite motif containing 14##AK055833|TRIM14|9830|tripartite motif containing 14##NM_003389|CORO2A|7464|coronin, actin binding protein, 2A	0.995844	0.0	
chr15	81433947	81434064	reg1008810.p2	5.277	+	AK302120 BC062471 NM_173528 AK307565	-7378	+	TSC_hg19_v1_chr15_+_81293344 NM_022566	-140661	+	D42039 TSC_hg19_v1_chr15_-_81282157 AK301416 AK026606 BC009210 BC012746 AY359110 NM_015154	-151805	-	AK124725 NM_001172128 AK124565 AK131530	55213	+	NM_172217 AY324389	83684	+	TSC_hg19_v1_chr15_+_81589328 NM_004513 U82972 AK222512 BC064911 BC050362	155299	+	AK302120|C15orf26|161502|chromosome 15 open reading frame 26##BC062471|C15orf26|161502|chromosome 15 open reading frame 26##NM_173528|C15orf26|161502|chromosome 15 open reading frame 26##AK307565|C15orf26|161502|chromosome 15 open reading frame 26##NM_022566|MESDC1|59274|mesoderm development candidate 1##D42039|MESDC2|23184|mesoderm development candidate 2##AK026606|MESDC2|23184|mesoderm development candidate 2##BC009210|MESDC2|23184|mesoderm development candidate 2##BC012746|MESDC2|23184|mesoderm development candidate 2##AY359110|MESDC2|23184|mesoderm development candidate 2##NM_015154|MESDC2|23184|mesoderm development candidate 2##AK124725|IL16|3603|interleukin 16##NM_001172128|IL16|3603|interleukin 16##AK124565|IL16|3603|interleukin 16##AK131530|IL16|3603|interleukin 16##NM_172217|IL16|3603|interleukin 16##AY324389|IL16|3603|interleukin 16##NM_004513|IL16|3603|interleukin 16##U82972|IL16|3603|interleukin 16##AK222512|IL16|3603|interleukin 16##BC064911|IL16|3603|interleukin 16##BC050362|IL16|3603|interleukin 16	0.998985	0.0	denovo_WM_7:30:0.518	denovo_WM_7:31:0.462
chr5	108744681	108744783	reg1004535.p1	5.277	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-660060	+	AK293376 J03358 NM_005246 AK296874	-661170	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-680752	-	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	889	-	TSC_hg19_v1_chr5_+_109025072 BC031659	280332	+	TSC_hg19_v1_chr5_+_109025096 BC111062	280365	+	AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.995213	0.0	denovo_WM_7:-21:0.899
chr6	155486308	155486447	reg1010014.p2	5.277	+	NM_012454	-74955	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-431552	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-431823	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	51751	+	BC020838 NM_001001346	98769	+	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	149208	-	NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial	0.0	0.0	
chr10	74855848	74856011	reg1000514.p4	5.276	+	AK311349 TSC_hg19_v1_chr10_-_74714574	-141357	-	AF349540 BC093996 BC111946 BC143532 AY358032 NM_032562 AF339053 AK313712 TSC_hg19_v1_chr10_-_74714543	-141418	-	AK096435 NM_152635 BC126440 AY358339 AY013707 TSC_hg19_v1_chr10_+_74653529	-202496	+	TSC_hg19_v1_chr10_-_74856621 M24486 M24487 AK312593 AK222960 BC034998	676	-	TSC_hg19_v1_chr10_-_74856725 NM_000917 NM_001017962 NM_001142595 NM_001142596	841	-	NM_015901 BC031224 AK303235 TSC_hg19_v1_chr10_+_74870272 AK300980 AK309755 AK316538 BC046173 BC038833	14322	+	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB##AF349540|PLA2G12B|84647|phospholipase A2, group XIIB##BC093996|PLA2G12B|84647|phospholipase A2, group XIIB##BC111946|PLA2G12B|84647|phospholipase A2, group XIIB##BC143532|PLA2G12B|84647|phospholipase A2, group XIIB##AY358032|PLA2G12B|84647|phospholipase A2, group XIIB##NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB##AF339053|PLA2G12B|84647|phospholipase A2, group XIIB##AK313712|PLA2G12B|84647|phospholipase A2, group XIIB##AK096435|OIT3|170392|oncoprotein induced transcript 3##NM_152635|OIT3|170392|oncoprotein induced transcript 3##BC126440|OIT3|170392|oncoprotein induced transcript 3##AY358339|OIT3|170392|oncoprotein induced transcript 3##AY013707|OIT3|170392|oncoprotein induced transcript 3##M24486|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##M24487|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK312593|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK222960|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##BC034998|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_000917|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001017962|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142595|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142596|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_015901|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC031224|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK303235|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK300980|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK309755|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK316538|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC046173|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC038833|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13	0.0	0.0	
chr14	74254557	74254737	reg1001727.p1	5.276	+	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	-728	-	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-27682	-	BC015668 TSC_hg19_v1_chr14_-_74226640	-28009	-	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	63942	+	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	98671	+	BC050683 AK298520 TSC_hg19_v1_chr14_+_74353561 AK315206 AK223261 AK293350 AK298307 AK303834 AK304609 AK310031 AK301382 AK309957 BC000330 BC004357 U90919	98899	+	NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##BC015668|C14orf43|91748|chromosome 14 open reading frame 43##NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410##BC050683|ZNF410|57862|zinc finger protein 410##AK298520|ZNF410|57862|zinc finger protein 410##AK315206|ZNF410|57862|zinc finger protein 410##AK223261|ZNF410|57862|zinc finger protein 410##AK293350|ZNF410|57862|zinc finger protein 410##AK298307|ZNF410|57862|zinc finger protein 410##AK303834|ZNF410|57862|zinc finger protein 410##AK304609|ZNF410|57862|zinc finger protein 410##AK310031|ZNF410|57862|zinc finger protein 410##AK301382|ZNF410|57862|zinc finger protein 410##AK309957|ZNF410|57862|zinc finger protein 410##BC000330|ZNF410|57862|zinc finger protein 410##BC004357|ZNF410|57862|zinc finger protein 410##U90919|ZNF410|57862|zinc finger protein 410	0.0	0.0	
chr20	56977554	56977680	reg1008704.p1	5.276	+	TSC_hg19_v1_chr20_+_56964291 BC001712 AF086628 AF086629 AK298036 AK127252 AB529043 CU674842 BT009811	-13163	+	TSC_hg19_v1_chr20_+_56964286 NM_001195677 NM_004738 AK023241 AY358464	-13393	+	TSC_hg19_v1_chr20_+_56885030 AK091180 AB464120 BT007046	-92588	+	AK124571 TSC_hg19_v1_chr20_+_57022525	44875	+	BC101758 BC101760 AK074647 NM_153360 AK293299	112281	-	TSC_hg19_v1_chr20_+_57226338 AK316547 NM_001001433 NM_001134772 NM_001134773 NM_001204868 NM_003763 AK304867 AB209296	248771	+	BC001712|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AF086628|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AF086629|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK298036|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK127252|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##BT009811|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##NM_001195677|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##NM_004738|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK023241|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AY358464|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK091180|RAB22A|57403|RAB22A, member RAS oncogene family##BT007046|RAB22A|57403|RAB22A, member RAS oncogene family##AK124571|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##BC101758|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##BC101760|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK074647|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##NM_153360|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK293299|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK316547|STX16|8675|syntaxin 16##NM_001001433|STX16|8675|syntaxin 16##NM_001134772|STX16|8675|syntaxin 16##NM_001134773|STX16|8675|syntaxin 16##NM_001204868|STX16|8675|syntaxin 16##NM_003763|STX16|8675|syntaxin 16##AK304867|STX16|8675|syntaxin 16##AB209296|STX16-NPEPL1|100534593|STX16-NPEPL1 readthrough (non-protein coding)	0.998747	0.0	
chr5	142972593	142972773	reg1001714.p2	5.276	+	NM_001018074 NM_001018075 NM_001018077	-157607	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-188517	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-188651	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	219075	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	577452	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	577493	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr6	66631981	66632121	reg1008244.p1	5.275	+	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	-214958	-	AY358133 NM_198283 AK310478	-342346	-	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-2275609	+	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	1966977	-	AL833240 TSC_hg19_v1_chr6_-_69345026	2712921	-	TSC_hg19_v1_chr6_+_69345227 NM_001704 AB011122 AK289696	2713350	+	FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3##NM_001704|BAI3|577|brain-specific angiogenesis inhibitor 3##AB011122|BAI3|577|brain-specific angiogenesis inhibitor 3##AK289696|BAI3|577|brain-specific angiogenesis inhibitor 3	0.130663	0.0	
chr17	20318353	20318477	reg1010326.p2	5.274	+	TSC_hg19_v1_chr17_+_20224469 BC036241	-93949	+	BC033618 TSC_hg19_v1_chr17_+_20108434 AK298601	-209981	+	TSC_hg19_v1_chr17_+_20059384 NM_001033554 NM_001033555 NM_001243438 AK301318 AK304186 AY816326 AY816327 BC021123 BC050058	-259081	+	BC105943 AK290263 NM_001042685 AK296659	52420	-	NM_001190790	164621	+	AK057473 TSC_hg19_v1_chr17_+_20771859 BC041488 EF565107	453390	+	BC036241|CCDC144C|348254|coiled-coil domain containing 144C##BC033618|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK298601|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001033554|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001033555|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##NM_001243438|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK301318|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AK304186|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816326|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##AY816327|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC021123|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC050058|SPECC1|92521|sperm antigen with calponin homology and coiled-coil domains 1##BC105943|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##AK290263|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##NM_001042685|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##AK296659|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##NM_001190790|CDRT15L2|256223|CMT1A duplicated region transcript 15-like 2	0.92917	0.0	denovo_WM_7:85:0.210	denovo_WM_7:88:0.651
chr17	54991800	54991898	reg1006149.p1	5.274	+	TSC_hg19_v1_chr17_-_54991410 NM_005082	-444	-	AB384815 TSC_hg19_v1_chr17_-_54991388 D21205 AB208994 BC016924 BC042541	-477	-	TSC_hg19_v1_chr17_+_54911515 NM_003647 BC022297 AK310668 AK293039 U49379	-80345	+	CU679689 DQ892927 DQ896176 TSC_hg19_v1_chr17_-_55038404 AK313616 U06632 BC010385 NM_004645	46552	-	NM_021626 TSC_hg19_v1_chr17_+_55055513 AY358559 AF282618 AK027373 BC010078 AK298161 CU687218 BC072405 AF113214	63655	+	TSC_hg19_v1_chr17_+_55162639 NM_003488 BC000729 X97335	170765	+	NM_005082|TRIM25|7706|tripartite motif containing 25##D21205|TRIM25|7706|tripartite motif containing 25##AB208994|TRIM25|7706|tripartite motif containing 25##BC016924|TRIM25|7706|tripartite motif containing 25##BC042541|TRIM25|7706|tripartite motif containing 25##NM_003647|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##BC022297|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##AK310668|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##AK293039|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##U49379|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##DQ892927|COIL|8161|coilin##DQ896176|COIL|8161|coilin##AK313616|COIL|8161|coilin##U06632|COIL|8161|coilin##BC010385|COIL|8161|coilin##NM_004645|COIL|8161|coilin##NM_021626|SCPEP1|59342|serine carboxypeptidase 1##AY358559|SCPEP1|59342|serine carboxypeptidase 1##AF282618|SCPEP1|59342|serine carboxypeptidase 1##AK027373|SCPEP1|59342|serine carboxypeptidase 1##BC010078|SCPEP1|59342|serine carboxypeptidase 1##AK298161|SCPEP1|59342|serine carboxypeptidase 1##BC072405|SCPEP1|59342|serine carboxypeptidase 1##AF113214|SCPEP1|59342|serine carboxypeptidase 1##NM_003488|AKAP1|8165|A kinase (PRKA) anchor protein 1##BC000729|AKAP1|8165|A kinase (PRKA) anchor protein 1##X97335|AKAP1|8165|A kinase (PRKA) anchor protein 1	1.978497	0.0	denovo_WM_7:22:0.959
chr6	83773102	83773240	reg1006579.p1	5.274	+	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	-699194	+	TSC_hg19_v1_chr6_+_83073565 BC037161 AK074786	-699638	+	AK291170 NM_006670	-700249	+	TSC_hg19_v1_chr6_-_83775541 BC101512 BC101538 BC143617 BC036049 AB126062 NM_198920 BC053645 AK298205 BC057845	2354	-	TSC_hg19_v1_chr6_+_83777389 BX648667 NM_001199942 NM_015018 AK094766	4226	+	AF102265 AB032081 AF180371 TSC_hg19_v1_chr6_-_83902977 AK314512 AK225363 AK001365 AK023432 BC001258 NM_001199918 NM_001199919 NM_015599	129801	-	AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein##BC037161|TPBG|7162|trophoblast glycoprotein##AK074786|TPBG|7162|trophoblast glycoprotein##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein##BC101512|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC101538|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC143617|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC036049|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AB126062|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##NM_198920|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC053645|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK298205|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC057845|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BX648667|DOPEY1|23033|dopey family member 1##NM_001199942|DOPEY1|23033|dopey family member 1##NM_015018|DOPEY1|23033|dopey family member 1##AK094766|DOPEY1|23033|dopey family member 1##AF102265|PGM3|5238|phosphoglucomutase 3##AB032081|PGM3|5238|phosphoglucomutase 3##AF180371|PGM3|5238|phosphoglucomutase 3##AK314512|PGM3|5238|phosphoglucomutase 3##AK225363|PGM3|5238|phosphoglucomutase 3##AK001365|PGM3|5238|phosphoglucomutase 3##AK023432|PGM3|5238|phosphoglucomutase 3##BC001258|PGM3|5238|phosphoglucomutase 3##NM_001199918|PGM3|5238|phosphoglucomutase 3##NM_001199919|PGM3|5238|phosphoglucomutase 3##NM_015599|PGM3|5238|phosphoglucomutase 3	1.96637	0.0	denovo_WM_7:-16:0.964	denovo_WM_7:-31:0.836
chr11	69152592	69152733	reg1008274.p2	5.273	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	-91040	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-295136	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-336236	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	303194	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	303248	+	BC000076 BC001501 BC014078 TSC_hg19_v1_chr11_+_69455939 M73554 BC023620	303288	+	AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1##BC000076|CCND1|595|cyclin D1##BC001501|CCND1|595|cyclin D1##BC014078|CCND1|595|cyclin D1##M73554|CCND1|595|cyclin D1##BC023620|CCND1|595|cyclin D1	0.912292	0.0	denovo_WM_7:-6:0.376	denovo_WM_7:-8:0.439
chr15	66678594	66678774	reg1008315.p1	5.273	+	AK000523 TSC_hg19_v1_chr15_-_66649024 AK299233 BC000870 NM_017858	-29661	-	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	-92785	+	NM_133375 AK295392 BC022089	-93039	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	478	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	589	+	TSC_hg19_v1_chr15_+_66694219 AK294322	15533	+	AK000523|TIPIN|54962|TIMELESS interacting protein##AK299233|TIPIN|54962|TIMELESS interacting protein##BC000870|TIPIN|54962|TIMELESS interacting protein##NM_017858|TIPIN|54962|TIMELESS interacting protein##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1	1.907029	0.0	denovo_WM_7:-23:0.978	denovo_WM_7:-47:0.624	denovo_WM_7:-48:0.305
chr3	66523337	66523517	reg1009874.p2	5.273	+	TSC_hg19_v1_chr3_+_66444897 AB075504	-78468	+	NM_001164796	-252260	+	AK092495 AX747571 NM_173471	-404143	+	AF381545 BC140907 NM_015541 AY730707	27425	-	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	28037	-	NM_032505 AK096640 AK300397	525301	+	NM_001164796|SLC25A26|115286|solute carrier family 25, member 26##AK092495|SLC25A26|115286|solute carrier family 25, member 26##AX747571|SLC25A26|115286|solute carrier family 25, member 26##NM_173471|SLC25A26|115286|solute carrier family 25, member 26##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_032505|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK096640|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK300397|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8	1.221798	0.0	denovo_WM_7:-1:0.549	denovo_WM_7:53:0.657
chr5	157835155	157835316	reg1009857.p2	5.273	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-549145	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-650855	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-664495	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	691222	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	691507	-	AK304228 NM_001199382	799413	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	1.992166	0.0	denovo_WM_7:56:0.212	denovo_WM_7:78:0.217
chr13	50650108	50650288	reg1010383.p2	5.272	+	AY169387 AY169388 NM_173605 NM_199464 AK313401 AY129654 AY129653 BC020887 BC032343 AY190921 AY190922 AL832695 CU689344 DQ891601 DQ894796	-60689	+	TSC_hg19_v1_chr13_+_50571212 NM_001007278 NM_005798 NM_052811 NM_213590 AY455758 AY764035 AK314496 AF241850 BC029514 AY191002 BC003579 BC063407 AF220127 AL360196	-79018	+	TSC_hg19_v1_chr13_-_50510444 AF052154 AF055016 BC022519 AK316576 BC007076 AK308818 AF334405 AK290576 NM_001127482 NM_020456	-139681	-	TSC_hg19_v1_chr13_-_50656128 BC038090 AF264787 Y15228 BC022349 BC006995 BC026275 BC030971 BC070292 BC055417 BC017819 BC022282	5951	-	AJ412023 AJ412024 AJ412025 AJ412026 AJ412038 AJ412039 AJ412054 AJ412055 AJ412056 AJ412057 AJ412058 AJ412059 AJ412060 AJ412061 AJ412062 Y15227 TSC_hg19_v1_chr13_+_50656364 BC004131 AK312167 BC020692 AK095311	6147	+	TSC_hg19_v1_chr13_-_50699781 AF380424	49617	-	AY169387|KCNRG|283518|potassium channel regulator##AY169388|KCNRG|283518|potassium channel regulator##NM_173605|KCNRG|283518|potassium channel regulator##NM_199464|KCNRG|283518|potassium channel regulator##AK313401|KCNRG|283518|potassium channel regulator##AY129654|KCNRG|283518|potassium channel regulator##AY129653|KCNRG|283518|potassium channel regulator##BC020887|KCNRG|283518|potassium channel regulator##BC032343|KCNRG|283518|potassium channel regulator##AY190921|KCNRG|283518|potassium channel regulator##AY190922|KCNRG|283518|potassium channel regulator##AL832695|TRIM13|10206|tripartite motif containing 13##DQ891601|KCNRG|283518|potassium channel regulator##DQ894796|KCNRG|283518|potassium channel regulator##NM_001007278|TRIM13|10206|tripartite motif containing 13##NM_005798|TRIM13|10206|tripartite motif containing 13##NM_052811|TRIM13|10206|tripartite motif containing 13##NM_213590|TRIM13|10206|tripartite motif containing 13##AY455758|TRIM13|10206|tripartite motif containing 13##AY764035|TRIM13|10206|tripartite motif containing 13##AK314496|TRIM13|10206|tripartite motif containing 13##AF241850|TRIM13|10206|tripartite motif containing 13##BC029514|TRIM13|10206|tripartite motif containing 13##AY191002|TRIM13|10206|tripartite motif containing 13##BC003579|TRIM13|10206|tripartite motif containing 13##BC063407|TRIM13|10206|tripartite motif containing 13##AF220127|TRIM13|10206|tripartite motif containing 13##AL360196|TRIM13|10206|tripartite motif containing 13##AF052154|SPRYD7|57213|SPRY domain containing 7##AF055016|SPRYD7|57213|SPRY domain containing 7##BC022519|SPRYD7|57213|SPRY domain containing 7##AK316576|SPRYD7|57213|SPRY domain containing 7##BC007076|SPRYD7|57213|SPRY domain containing 7##AK308818|SPRYD7|57213|SPRY domain containing 7##AF334405|SPRYD7|57213|SPRY domain containing 7##AK290576|SPRYD7|57213|SPRY domain containing 7##NM_001127482|SPRYD7|57213|SPRY domain containing 7##NM_020456|SPRYD7|57213|SPRY domain containing 7##BC038090|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AF264787|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##Y15228|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##BC070292|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##BC055417|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AJ412023|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412024|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412061|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412062|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##Y15227|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC020692|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AK095311|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)	0.994341	0.0	
chr2	98629351	98629481	reg1009853.p2	5.272	+	TSC_hg19_v1_chr2_-_98612395 AK098792	-17013	-	AK297450 TSC_hg19_v1_chr2_-_98612338 NM_015348	-17230	-	AK025852 TSC_hg19_v1_chr2_-_98408976	-220494	-	NM_144992 AL832761 BC095480 TSC_hg19_v1_chr2_+_98703652 AK292397 AK057248 AL832635 BC150653 AK302390 BC026091	74230	+	DQ426863 NM_001079878 NM_001298 DQ067460	333217	+	DQ067461 TSC_hg19_v1_chr2_+_98962901 DQ426864 DQ067459 AK308149	333489	+	AK098792|TMEM131|23505|transmembrane protein 131##AK297450|TMEM131|23505|transmembrane protein 131##NM_015348|TMEM131|23505|transmembrane protein 131##AK025852|TMEM131|23505|transmembrane protein 131##NM_144992|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832761|VWA3B|200403|von Willebrand factor A domain containing 3B##BC095480|VWA3B|200403|von Willebrand factor A domain containing 3B##AK292397|VWA3B|200403|von Willebrand factor A domain containing 3B##AK057248|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832635|VWA3B|200403|von Willebrand factor A domain containing 3B##BC150653|VWA3B|200403|von Willebrand factor A domain containing 3B##AK302390|VWA3B|200403|von Willebrand factor A domain containing 3B##BC026091|VWA3B|200403|von Willebrand factor A domain containing 3B##DQ426863|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001079878|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001298|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067460|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067461|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067459|CNGA3|1261|cyclic nucleotide gated channel alpha 3##AK308149|CNGA3|1261|cyclic nucleotide gated channel alpha 3	0.0	0.0	
chr8	82068626	82068747	reg1009405.p2	5.272	+	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	-44372	-	AK131274 NM_001033723	-281671	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-670202	+	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	124087	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	290983	-	AB528797 NM_001080526	305071	-	AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2##NM_001080526|FABP9|646480|fatty acid binding protein 9, testis	2.865136	0.0	denovo_WM_7:-40:0.577	denovo_WM_7:-43:0.319	denovo_WM_7:-56:0.306	denovo_WM_7:-58:0.387	denovo_WM_7:-73:0.374	denovo_WM_7:-74:0.406
chr17	2740491	2740671	reg1008205.p1	5.271	+	AJ628446 AJ628447 NM_001100398 NM_015085 TSC_hg19_v1_chr17_+_2699761 CR627427 BC140870 BC140871	-40828	+	AK124640 TSC_hg19_v1_chr17_+_2680496	-60158	+	NM_015229 TSC_hg19_v1_chr17_-_2615039	-125594	-	BC106876 NM_014566 AB529301	226346	-	AB529300 BC069552 BC106735 BC106736 NM_002548	255708	-	BC069379 NM_003555 BC095520 AB529303	290320	-	AJ628446|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628447|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_001100398|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015085|RAP1GAP2|23108|RAP1 GTPase activating protein 2##CR627427|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140870|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140871|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AK124640|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015229|KIAA0664|23277|KIAA0664##BC106876|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##NM_014566|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##BC069552|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106735|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106736|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##NM_002548|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC069379|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1##NM_003555|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1##BC095520|OR1G1|8390|olfactory receptor, family 1, subfamily G, member 1	0.999367	0.0	denovo_WM_7:-23:0.307	denovo_WM_7:-24:0.307	denovo_WM_7:-25:0.307
chr1	154440222	154440315	reg1009496.p1	5.270	+	TSC_hg19_v1_chr1_+_154378074 AK293013 X58298 AK312730 BC035327 AB527867 HQ258435 HQ258616	-62194	+	AK223582 BC132684 BC132686 TSC_hg19_v1_chr1_+_154377856	-62416	+	NM_000565 NM_001206866 NM_181359 X12830 BC089410 TSC_hg19_v1_chr1_+_154377822	-62518	+	BC143765 BC117210 NM_001010846	34256	-	BC044864 NM_001098475 NM_182499	34426	+	BC107057 AY112698 TSC_hg19_v1_chr1_-_154531132 AY948200 NM_017582	90841	-	AK293013|IL6R|3570|interleukin 6 receptor##X58298|IL6R|3570|interleukin 6 receptor##AK312730|IL6R|3570|interleukin 6 receptor##BC035327|IL6R|3570|interleukin 6 receptor##HQ258435|IL6R|3570|interleukin 6 receptor##HQ258616|IL6R|3570|interleukin 6 receptor##AK223582|IL6R|3570|interleukin 6 receptor##BC132684|IL6R|3570|interleukin 6 receptor##BC132686|IL6R|3570|interleukin 6 receptor##NM_000565|IL6R|3570|interleukin 6 receptor##NM_001206866|IL6R|3570|interleukin 6 receptor##NM_181359|IL6R|3570|interleukin 6 receptor##X12830|IL6R|3570|interleukin 6 receptor##BC089410|IL6R|3570|interleukin 6 receptor##BC143765|SHE|126669|Src homology 2 domain containing E##BC117210|SHE|126669|Src homology 2 domain containing E##NM_001010846|SHE|126669|Src homology 2 domain containing E##BC044864|TDRD10|126668|tudor domain containing 10##NM_001098475|TDRD10|126668|tudor domain containing 10##NM_182499|TDRD10|126668|tudor domain containing 10##BC107057|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY112698|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY948200|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##NM_017582|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1	0.201045	0.0	
chr7	70163307	70163429	reg1008665.p1	5.270	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1098780	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1099039	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1099532	+	TSC_hg19_v1_chr7_+_70231164 AK296981	67837	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	434420	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1638410	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.0	0.02459	
chr1	15791395	15791554	reg1009774.p2	5.269	+	NM_033440 BC007031 BC069331 BC069432 M16652 AK312198 M16631 D00236 CR450291	-8239	+	BC015118 CR749296 NM_007272 AK289447 BC059779 S82198	-26527	+	BC068473 TSC_hg19_v1_chr1_+_15736425 BC007233 BC014923 BC023611	-55039	+	BC069412 BC069455 M16653 NM_015849 BC113540 BC113542 BC171735 HQ258147	11131	+	TSC_hg19_v1_chr1_-_15850711 AB020979 AF093130 AF110376 AJ781267 AY732490 BT006911 CU675417 DQ891693 U56390 AB590140 BC002452 AK292080 AB015653 AK292111	59229	-	TSC_hg19_v1_chr1_-_15850729 U60521	59272	-	NM_033440|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC007031|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC069331|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC069432|CELA2A|63036|chymotrypsin-like elastase family, member 2A##M16652|CELA2A|63036|chymotrypsin-like elastase family, member 2A##AK312198|CELA2A|63036|chymotrypsin-like elastase family, member 2A##M16631|CELA2A|63036|chymotrypsin-like elastase family, member 2A##D00236|CELA2A|63036|chymotrypsin-like elastase family, member 2A##CR450291|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC015118|CTRC|11330|chymotrypsin C (caldecrin)##CR749296|CTRC|11330|chymotrypsin C (caldecrin)##NM_007272|CTRC|11330|chymotrypsin C (caldecrin)##AK289447|CTRC|11330|chymotrypsin C (caldecrin)##BC059779|CTRC|11330|chymotrypsin C (caldecrin)##S82198|CTRC|11330|chymotrypsin C (caldecrin)##BC068473|EFHD2|79180|EF-hand domain family, member D2##BC007233|EFHD2|79180|EF-hand domain family, member D2##BC014923|EFHD2|79180|EF-hand domain family, member D2##BC023611|EFHD2|79180|EF-hand domain family, member D2##BC069412|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC069455|CELA2B|51032|chymotrypsin-like elastase family, member 2B##M16653|CELA2B|51032|chymotrypsin-like elastase family, member 2B##NM_015849|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC113540|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC113542|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC171735|CELA2B|51032|chymotrypsin-like elastase family, member 2B##HQ258147|CELA2B|51032|chymotrypsin-like elastase family, member 2B##AB020979|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AF093130|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AF110376|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AJ781267|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AY732490|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##BT006911|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##DQ891693|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##U56390|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##BC002452|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AK292080|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AB015653|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AK292111|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##U60521|CASP9|842|caspase 9, apoptosis-related cysteine peptidase	1.012141	0.0	
chr13	31341496	31341676	reg1008835.p2	5.269	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	-31871	+	NM_001629 TSC_hg19_v1_chr13_+_31309681	-31922	+	AK314143 NM_001204406	-53972	+	NM_032849 AK055635 TSC_hg19_v1_chr13_+_31480407 AL832478 BC040165 BC101624 BC101626 CU691826	138894	+	TSC_hg19_v1_chr13_+_31506809 BC030277 NM_152325 CU688876	165244	+	CU691504 DQ891727 DQ894904 AF039695 TSC_hg19_v1_chr13_-_31735849	394208	-	BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_032849|C13orf33|84935|chromosome 13 open reading frame 33##AK055635|C13orf33|84935|chromosome 13 open reading frame 33##BC040165|C13orf33|84935|chromosome 13 open reading frame 33##BC101624|C13orf33|84935|chromosome 13 open reading frame 33##BC101626|C13orf33|84935|chromosome 13 open reading frame 33##BC030277|C13orf26|122046|chromosome 13 open reading frame 26##NM_152325|C13orf26|122046|chromosome 13 open reading frame 26##DQ891727|HSPH1|10808|heat shock 105kDa/110kDa protein 1##DQ894904|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AF039695|HSPH1|10808|heat shock 105kDa/110kDa protein 1	0.990143	0.360842	CTCF.p2:33:0.361	denovo_WM_7:57:0.361	denovo_WM_7:58:0.629
chr17_ctg5_hap1	644648	644828	reg1010729.p2	5.269	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.437913	0.0	denovo_WM_7:105:0.210
chr19	3065921	3066101	reg1008113.p2	5.269	+	TSC_hg19_v1_chr19_-_3062919 AB527754 HQ258149 BC113735 BC113737 NM_198969 AK094591	-3004	-	X73357 TSC_hg19_v1_chr19_-_3062347 U04241 AF072902 AK314713 NM_001130 NM_198970	-3729	-	X73358 TSC_hg19_v1_chr19_-_3061344	-4714	-	TSC_hg19_v1_chr19_+_3094359 BC089041 NM_002067	28347	+	TSC_hg19_v1_chr19_+_3094528 BC096225 BC096226 BC096227 AB463701 AF011497 AF493900 CR457004 AB209435	28580	+	TSC_hg19_v1_chr19_+_3122331 BC111027 BC001528	56382	+	HQ258149|AES|166|amino-terminal enhancer of split##BC113735|AES|166|amino-terminal enhancer of split##BC113737|AES|166|amino-terminal enhancer of split##NM_198969|AES|166|amino-terminal enhancer of split##AK094591|AES|166|amino-terminal enhancer of split##X73357|AES|166|amino-terminal enhancer of split##U04241|AES|166|amino-terminal enhancer of split##AF072902|AES|166|amino-terminal enhancer of split##AK314713|AES|166|amino-terminal enhancer of split##NM_001130|AES|166|amino-terminal enhancer of split##NM_198970|AES|166|amino-terminal enhancer of split##X73358|AES|166|amino-terminal enhancer of split##BC089041|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##NM_002067|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC096225|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC096226|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC096227|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##AF011497|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##AF493900|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##CR457004|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##AB209435|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC001528|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	0.0	0.0	
chr3	150353602	150353695	reg1000843.p2	5.269	+	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	-32493	+	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	-32672	-	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-89062	+	AK093375 AX748085 BC036239 BC029577 NM_152394	68081	-	TSC_hg19_v1_chr3_-_150480902 AK223565	127251	-	TSC_hg19_v1_chr3_-_150480936 BC013082	127282	-	NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A##AK223565|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##BC013082|SIAH2|6478|seven in absentia homolog 2 (Drosophila)	0.093043	0.0	
chr4	39031360	39031447	reg1009459.p1	5.269	+	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-162012	+	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	-172975	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	-224984	-	BC030803 BC060512 AK026888 NM_024943	2607	-	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	15035	+	AK289785 NM_015990 NM_199039	32448	+	NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)	1.865337	0.0	denovo_WM_7:-46:0.818	denovo_WM_7:-61:0.838
chr5	138956529	138956709	reg1005391.p1	5.269	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	-15271	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-15694	+	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	-15846	+	TSC_hg19_v1_chr5_+_139027874 AK024338	71255	+	TSC_hg19_v1_chr5_+_139027942 BC006428	71311	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	71365	+	U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK024338|CXXC5|51523|CXXC finger protein 5##BC006428|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5	1.988801	0.0	denovo_WM_7:-56:0.331	denovo_WM_7:-57:0.331	denovo_WM_7:-58:0.331	denovo_WM_7:-81:0.424	denovo_WM_7:-82:0.424
chrX	49969064	49969214	reg1000646.p1	5.269	+	AK292463 BC126250 BC126252 NM_003886 Y15195	-3479	-	NM_139289 BC033007 BC070150 TSC_hg19_v1_chrX_-_49965024	-4126	-	NM_000084 AK308089 TSC_hg19_v1_chrX_+_49832243 AK290940	-136894	+	AJ314764 AJ314765 AJ314766 AJ416458 NM_033031 NM_033670	58400	+	TSC_hg19_v1_chrX_-_50213589 BC137319 BC137320 NM_001013742 AB183864	244523	-	TSC_hg19_v1_chrX_-_50386679 AY044234	417538	-	AK292463|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC126250|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC126252|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_003886|AKAP4|8852|A kinase (PRKA) anchor protein 4##Y15195|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_139289|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC033007|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC070150|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_000084|CLCN5|1184|chloride channel 5##AK308089|CLCN5|1184|chloride channel 5##AK290940|CLCN5|1184|chloride channel 5##AJ314764|CCNB3|85417|cyclin B3##AJ314765|CCNB3|85417|cyclin B3##AJ314766|CCNB3|85417|cyclin B3##AJ416458|CCNB3|85417|cyclin B3##NM_033031|CCNB3|85417|cyclin B3##NM_033670|CCNB3|85417|cyclin B3##BC137319|DGKK|139189|diacylglycerol kinase, kappa##BC137320|DGKK|139189|diacylglycerol kinase, kappa##NM_001013742|DGKK|139189|diacylglycerol kinase, kappa##AB183864|DGKK|139189|diacylglycerol kinase, kappa##AY044234|SHROOM4|57477|shroom family member 4	0.016531	0.0	
chr19	39931004	39931123	reg1000669.p1	5.268	+	CU678668 CU687136 DQ893449 DQ896219 TSC_hg19_v1_chr19_-_39926589 BC024970 BC007977 BC071674 M60854 BC095429 BC004324 AK055869 AK315498 D28392 NM_001020	-4487	-	AK024429 NM_022835	-27314	+	TSC_hg19_v1_chr19_+_39899749 AJ227917	-31270	+	NM_001111020 NM_001130824 NM_001130825 TSC_hg19_v1_chr19_+_39936212 AB000516	5135	+	TSC_hg19_v1_chr19_+_39936221 AK295137 AK296117 AK302954 Y12790	5164	+	TSC_hg19_v1_chr19_+_39936247 U56402	5182	+	DQ893449|RPS16|6217|ribosomal protein S16##DQ896219|RPS16|6217|ribosomal protein S16##BC024970|RPS16|6217|ribosomal protein S16##BC007977|RPS16|6217|ribosomal protein S16##BC071674|RPS16|6217|ribosomal protein S16##M60854|RPS16|6217|ribosomal protein S16##BC095429|RPS16|6217|ribosomal protein S16##BC004324|RPS16|6217|ribosomal protein S16##AK055869|RPS16|6217|ribosomal protein S16##AK315498|RPS16|6217|ribosomal protein S16##D28392|RPS16|6217|ribosomal protein S16##NM_001020|RPS16|6217|ribosomal protein S16##AK024429|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_022835|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_001111020|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130824|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130825|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AB000516|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK295137|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK296117|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK302954|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##Y12790|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##U56402|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)	0.891777	0.085427	denovo_WM_7:77:0.345
chr2	108533587	108533733	reg1009406.p1	5.268	+	NM_182588 TSC_hg19_v1_chr2_+_108443399	-90266	+	TSC_hg19_v1_chr2_-_107503517 AX795200 AB059555 BC008680 AK307784 NM_001142352 NM_032528 FJ433883	-1030114	-	TSC_hg19_v1_chr2_-_107503063 FJ433884	-1030598	-	AK315280 AB084377 AK300801 AB043997 NM_021815 BC111525 BC111524	69342	+	AB528243 NM_001008743	329990	+	AF186252 AF186255 NM_001056 NM_176825 AF186251 AF186254 AK297086 AK313193 AK298306 U66036 AF186253 AF186256 AB008164 AF026303 BC005353	371625	+	NM_182588|RGPD4|285190|RANBP2-like and GRIP domain containing 4##AB059555|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##BC008680|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##AK307784|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##NM_001142352|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##NM_032528|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##AK315280|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##AB084377|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##AK300801|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##AB043997|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##NM_021815|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##BC111525|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##BC111524|SLC5A7|60482|solute carrier family 5 (choline transporter), member 7##NM_001008743|SULT1C3|442038|sulfotransferase family, cytosolic, 1C, member 3##AF186252|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AF186255|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##NM_001056|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##NM_176825|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AF186251|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AF186254|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AK297086|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AK313193|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AK298306|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##U66036|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AF186253|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AF186256|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AB008164|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##AF026303|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2##BC005353|SULT1C2|6819|sulfotransferase family, cytosolic, 1C, member 2	0.993308	0.0	denovo_WM_7:23:0.914
chr1	245970631	245970811	reg1008862.p1	5.267	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-652413	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-837038	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-837091	+	AK024733 NM_022743	609990	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	699833	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	699887	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.974886	0.0	denovo_WM_7:-62:0.508	denovo_WM_7:-63:0.407
chr1	47755122	47755296	reg1010573.p2	5.267	+	M61108 NM_003189	-59767	-	TSC_hg19_v1_chr1_-_47655728 NM_005764	-99463	-	CR450304 CU680280 BC012303 TSC_hg19_v1_chr1_-_47655693	-99561	-	TSC_hg19_v1_chr1_-_47779820 DQ358744 AK307519 BC053615 CR749851 M74558 NM_001048166 NM_003035	24576	-	TSC_hg19_v1_chr1_+_47799474 NM_001136140 NM_016308	44256	+	TSC_hg19_v1_chr1_+_47799615 BC017806 AF087865 AF112216 AF110643 AK223014 AK294294 AK298502 AF070416 AK025258 AK293238 AK312693 BC014961 AB528698 DQ892213 DQ895408 DQ895409	44343	+	M61108|TAL1|6886|T-cell acute lymphocytic leukemia 1##NM_003189|TAL1|6886|T-cell acute lymphocytic leukemia 1##NM_005764|PDZK1IP1|10158|PDZK1 interacting protein 1##CR450304|PDZK1IP1|10158|PDZK1 interacting protein 1##BC012303|PDZK1IP1|10158|PDZK1 interacting protein 1##AK307519|STIL|6491|SCL/TAL1 interrupting locus##BC053615|STIL|6491|SCL/TAL1 interrupting locus##CR749851|STIL|6491|SCL/TAL1 interrupting locus##M74558|STIL|6491|SCL/TAL1 interrupting locus##NM_001048166|STIL|6491|SCL/TAL1 interrupting locus##NM_003035|STIL|6491|SCL/TAL1 interrupting locus##NM_001136140|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##NM_016308|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC017806|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF087865|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF112216|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF110643|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK223014|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK294294|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK298502|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF070416|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK025258|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK293238|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK312693|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC014961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ892213|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895408|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895409|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic	0.0	0.0	
chr19	47938691	47938838	reg1006833.p2	5.267	+	TSC_hg19_v1_chr19_-_47922785 NM_001009813 NM_020160	-16001	-	TSC_hg19_v1_chr19_-_47922468 BC025404	-16258	-	TSC_hg19_v1_chr19_-_47922396 BC069251	-16366	-	TSC_hg19_v1_chr19_-_47975151 AK293836 AB029010 AK293860 AK293457	36383	-	TSC_hg19_v1_chr19_-_47975247 AK302552 NM_015063	36511	-	TSC_hg19_v1_chr19_-_47987466 AK298672 BC009249 AF105369 AK225419 AK023996	48678	-	NM_001009813|MEIS3|56917|Meis homeobox 3##NM_020160|MEIS3|56917|Meis homeobox 3##BC025404|MEIS3|56917|Meis homeobox 3##BC069251|MEIS3|56917|Meis homeobox 3##AK293836|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AB029010|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK293860|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK293457|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK302552|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##NM_015063|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK298672|KPTN|11133|kaptin (actin binding protein)##BC009249|KPTN|11133|kaptin (actin binding protein)##AF105369|KPTN|11133|kaptin (actin binding protein)##AK225419|KPTN|11133|kaptin (actin binding protein)##AK023996|KPTN|11133|kaptin (actin binding protein)	0.995019	0.0	denovo_WM_7:51:0.314	denovo_WM_7:52:0.314	denovo_WM_7:53:0.314
chr9	117158021	117158169	reg1007756.p1	5.267	+	AY703040 BC055285 NM_030767	-1411	-	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	-7805	-	BC042202 TSC_hg19_v1_chr9_-_117111294	-46806	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	2656	-	AL110228 NM_001083885	107378	-	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	109635	-	AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##BC042202|AKNA|80709|AT-hook transcription factor##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor##AL110228|DFNB31|25861|deafness, autosomal recessive 31##NM_001083885|DFNB31|25861|deafness, autosomal recessive 31##BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31	1.099456	0.0	
chr11	41330278	41330375	reg1009257.p1	5.266	+	AB046800 NM_020929	-1014663	-	AY358293 TSC_hg19_v1_chr11_-_40314659 BC041374	-1015732	-	AK292664 BC022397 NM_000536 NM_001243785 NM_001243786	-4710524	-	TSC_hg19_v1_chr11_+_43333523 NM_001142930 NM_001142931 NM_001243747 NM_006595	2003192	+	TSC_hg19_v1_chr11_+_43333545 AK299288 AK304157 AK294724 Y15906 AF229254 AY311389 U83857 BC017709	2003238	+	AK293303 TSC_hg19_v1_chr11_+_43333603 DQ890671 DQ893852 BT007093	2003314	+	AB046800|LRRC4C|57689|leucine rich repeat containing 4C##NM_020929|LRRC4C|57689|leucine rich repeat containing 4C##AY358293|LRRC4C|57689|leucine rich repeat containing 4C##BC041374|LRRC4C|57689|leucine rich repeat containing 4C##AK292664|RAG2|5897|recombination activating gene 2##BC022397|RAG2|5897|recombination activating gene 2##NM_000536|RAG2|5897|recombination activating gene 2##NM_001243785|RAG2|5897|recombination activating gene 2##NM_001243786|RAG2|5897|recombination activating gene 2##NM_001142930|API5|8539|apoptosis inhibitor 5##NM_001142931|API5|8539|apoptosis inhibitor 5##NM_001243747|API5|8539|apoptosis inhibitor 5##NM_006595|API5|8539|apoptosis inhibitor 5##AK299288|API5|8539|apoptosis inhibitor 5##AK304157|API5|8539|apoptosis inhibitor 5##AK294724|API5|8539|apoptosis inhibitor 5##Y15906|API5|8539|apoptosis inhibitor 5##AF229254|API5|8539|apoptosis inhibitor 5##AY311389|API5|8539|apoptosis inhibitor 5##U83857|API5|8539|apoptosis inhibitor 5##BC017709|API5|8539|apoptosis inhibitor 5##AK293303|API5|8539|apoptosis inhibitor 5##DQ890671|API5|8539|apoptosis inhibitor 5##DQ893852|API5|8539|apoptosis inhibitor 5##BT007093|API5|8539|apoptosis inhibitor 5	1.015584	0.0	denovo_WM_7:35:0.398	denovo_WM_7:38:0.265	denovo_WM_7:39:0.227
chr12	132408439	132408583	reg1010109.p1	5.266	+	TSC_hg19_v1_chr12_+_132379266 AF045458 NM_003565	-29238	+	TSC_hg19_v1_chr12_+_132312945 BC045610 AB021225 NM_016155 BC040507	-95545	+	TSC_hg19_v1_chr12_+_132195639 BC024041 AK295149 AK310836 BC008707 BC015953 NM_004592 AB208921 U08377 BC113420 BC136678 BC144364	-212855	+	TSC_hg19_v1_chr12_+_132413775 NM_001002020 AK292242	5248	+	TSC_hg19_v1_chr12_+_132413820 NM_001002019 AK074659 NM_025215 BC035964 AF318369 BC002901	5294	+	BC009505 BC019320 TSC_hg19_v1_chr12_+_132414144	5581	+	AF045458|ULK1|8408|unc-51-like kinase 1 (C. elegans)##NM_003565|ULK1|8408|unc-51-like kinase 1 (C. elegans)##BC045610|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##AB021225|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##NM_016155|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC040507|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC024041|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC008707|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC015953|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_004592|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AB208921|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##U08377|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC113420|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC136678|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC144364|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_001002020|PUS1|80324|pseudouridylate synthase 1##AK292242|PUS1|80324|pseudouridylate synthase 1##NM_001002019|PUS1|80324|pseudouridylate synthase 1##AK074659|PUS1|80324|pseudouridylate synthase 1##NM_025215|PUS1|80324|pseudouridylate synthase 1##BC035964|PUS1|80324|pseudouridylate synthase 1##AF318369|PUS1|80324|pseudouridylate synthase 1##BC002901|PUS1|80324|pseudouridylate synthase 1##BC009505|PUS1|80324|pseudouridylate synthase 1##BC019320|PUS1|80324|pseudouridylate synthase 1	0.995197	0.0	
chr19	5548012	5548078	reg1006681.p1	5.266	+	AK098722 NM_181710 AK292251 BC017592	-92619	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	-207251	-	TSC_hg19_v1_chr19_+_5032899 CU687848	-515146	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	74713	-	TSC_hg19_v1_chr19_-_5622794 NM_014649	74820	-	NM_001201338 NM_001201339 NM_001201340 NM_002967 TSC_hg19_v1_chr19_+_5623093 AK294718	75027	+	AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2##NM_014649|SAFB2|9667|scaffold attachment factor B2##NM_001201338|SAFB|6294|scaffold attachment factor B##NM_001201339|SAFB|6294|scaffold attachment factor B##NM_001201340|SAFB|6294|scaffold attachment factor B##NM_002967|SAFB|6294|scaffold attachment factor B##AK294718|SAFB|6294|scaffold attachment factor B	0.0	0.07173	
chr2	123471347	123471503	reg1007938.p1	5.266	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-958188	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-976960	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-1063780	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1311439	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	3942282	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	3942367	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.997296	0.0	
chr21	34604919	34605049	reg1008764.p1	5.266	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	-2582	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	-2705	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	-2764	+	TSC_hg19_v1_chr21_+_34638697 AK313348 NM_000628 BC001903 Z17227	33717	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	33770	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	92234	+	BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##AK313348|IL10RB|3588|interleukin 10 receptor, beta##NM_000628|IL10RB|3588|interleukin 10 receptor, beta##BC001903|IL10RB|3588|interleukin 10 receptor, beta##Z17227|IL10RB|3588|interleukin 10 receptor, beta##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1	1.322825	0.0	denovo_WM_7:-16:0.479	denovo_WM_7:-17:0.427	denovo_WM_7:24:0.265
chr5	10201716	10201820	reg1009250.p1	5.266	+	BC095521 NM_019599	-571306	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	-655574	-	TSC_hg19_v1_chr5_+_7869306 BC062577	-2332458	+	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	48216	-	AK300042 TSC_hg19_v1_chr5_-_10250001 AK316317 AK055604 AK302012 NM_199133	48237	-	NM_012073 AK302368 TSC_hg19_v1_chr5_+_10250368	48557	+	BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC063406|FAM173B|134145|family with sequence similarity 173, member B##AK300042|FAM173B|134145|family with sequence similarity 173, member B##AK316317|FAM173B|134145|family with sequence similarity 173, member B##AK055604|FAM173B|134145|family with sequence similarity 173, member B##AK302012|FAM173B|134145|family with sequence similarity 173, member B##NM_199133|FAM173B|134145|family with sequence similarity 173, member B##NM_012073|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK302368|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)	0.0	0.064665	
chr21	43376187	43376294	reg1009133.p1	5.265	+	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	-2157	-	BC062323 AL833323 NM_199050	-29451	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-76742	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	54231	-	AB051810 AB051811 NM_001199527 NM_001199528	106827	+	AB096965 AY771619 AY771620 NM_001004416 NM_173568	115185	+	AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1##AB096965|UMODL1|89766|uromodulin-like 1##AY771619|UMODL1|89766|uromodulin-like 1##AY771620|UMODL1|89766|uromodulin-like 1##NM_001004416|UMODL1|89766|uromodulin-like 1##NM_173568|UMODL1|89766|uromodulin-like 1	0.991731	0.0	denovo_WM_7:-69:0.331	denovo_WM_7:-70:0.331	denovo_WM_7:-71:0.331
chr22	45559071	45559251	reg1006227.p1	5.265	+	TSC_hg19_v1_chr22_-_45405781 AK092243 AX747427 NM_001135862	-153367	-	AB489146 CU012999 CU013287 CU680262 CR456448 BC012187 NM_138415	-153657	-	TSC_hg19_v1_chr22_-_45404785 AK299836 AK297317 AK091480 AX747013 NM_001242450	-154332	-	NM_007172 TSC_hg19_v1_chr22_+_45559808	610	+	TSC_hg19_v1_chr22_+_45559866 AK314454 BC070133	705	+	AK304223 TSC_hg19_v1_chr22_+_45559883 BC016055 AF107840 AL389949 AL389950	859	+	AK092243|PHF21B|112885|PHD finger protein 21B##NM_001135862|PHF21B|112885|PHD finger protein 21B##CU012999|PHF21B|112885|PHD finger protein 21B##CU013287|PHF21B|112885|PHD finger protein 21B##CR456448|PHF21B|112885|PHD finger protein 21B##BC012187|PHF21B|112885|PHD finger protein 21B##NM_138415|PHF21B|112885|PHD finger protein 21B##AK299836|PHF21B|112885|PHD finger protein 21B##AK297317|PHF21B|112885|PHD finger protein 21B##AK091480|PHF21B|112885|PHD finger protein 21B##NM_001242450|PHF21B|112885|PHD finger protein 21B##NM_007172|NUP50|10762|nucleoporin 50kDa##AK314454|NUP50|10762|nucleoporin 50kDa##BC070133|NUP50|10762|nucleoporin 50kDa##AK304223|NUP50|10762|nucleoporin 50kDa##BC016055|NUP50|10762|nucleoporin 50kDa##AF107840|NUP50|10762|nucleoporin 50kDa##AL389949|NUP50|10762|nucleoporin 50kDa##AL389950|NUP50|10762|nucleoporin 50kDa	1.017497	0.0	
chr5	67571314	67571459	reg1007723.p2	5.265	+	TSC_hg19_v1_chr5_+_67511602 BC094795	-59779	+	TSC_hg19_v1_chr5_+_67511583 NM_181523	-59806	+	BC109069 BC109070 D83597 NM_005582 AK313177	-1078786	-	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	12908	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	15160	+	AK094785 NM_001242466 AK294919	17066	+	BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	0.999416	0.0	denovo_WM_7:-30:0.848
chr9	35776217	35776370	reg1005683.p2	5.265	+	DQ012170 BC071800 BC105274 NM_001044264	-22021	-	TSC_hg19_v1_chr9_+_35749334 D87447 BC001725	-26957	+	NM_001080496 TSC_hg19_v1_chr9_+_35749276 AK289566	-27012	+	AJ005282 NM_003995	16112	+	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	35907	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	38719	-	DQ012170|MSMP|692094|microseminoprotein, prostate associated##BC071800|MSMP|692094|microseminoprotein, prostate associated##BC105274|MSMP|692094|microseminoprotein, prostate associated##NM_001044264|MSMP|692094|microseminoprotein, prostate associated##D87447|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##BC001725|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##NM_001080496|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##AK289566|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##AJ005282|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##NM_003995|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2	0.996777	0.0	denovo_WM_7:2:0.201	denovo_WM_7:3:0.573
chr1	90707096	90707249	reg1009365.p2	5.264	+	TSC_hg19_v1_chr1_+_90460726 NM_182975 NM_182976 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073	-246456	+	BC009486 TSC_hg19_v1_chr1_+_90287584	-419608	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	-419714	+	BC126439 BC126441 AY338397 NM_020063	475613	-	BC050656 TSC_hg19_v1_chr1_-_91487020 AK024026 NM_016620	779866	-	TSC_hg19_v1_chr1_-_91487583 BC041138 AK291520	780391	-	NM_182975|ZNF326|284695|zinc finger protein 326##NM_182976|ZNF326|284695|zinc finger protein 326##BC052645|ZNF326|284695|zinc finger protein 326##BC061521|ZNF326|284695|zinc finger protein 326##BC038454|ZNF326|284695|zinc finger protein 326##BC090866|ZNF326|284695|zinc finger protein 326##AK000410|ZNF326|284695|zinc finger protein 326##BC053888|ZNF326|284695|zinc finger protein 326##BC014899|ZNF326|284695|zinc finger protein 326##BC070341|ZNF326|284695|zinc finger protein 326##BC013102|ZNF326|284695|zinc finger protein 326##AK303707|ZNF326|284695|zinc finger protein 326##AK297073|ZNF326|284695|zinc finger protein 326##BC009486|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC126439|BARHL2|343472|BarH-like homeobox 2##BC126441|BARHL2|343472|BarH-like homeobox 2##AY338397|BARHL2|343472|BarH-like homeobox 2##NM_020063|BARHL2|343472|BarH-like homeobox 2##BC050656|ZNF644|84146|zinc finger protein 644##AK024026|ZNF644|84146|zinc finger protein 644##NM_016620|ZNF644|84146|zinc finger protein 644##BC041138|ZNF644|84146|zinc finger protein 644##AK291520|ZNF644|84146|zinc finger protein 644	2.769595	0.0	denovo_WM_7:61:0.473	denovo_WM_7:76:0.331	denovo_WM_7:89:0.206	denovo_WM_7:91:0.245	denovo_WM_7:92:0.219
chr2	109228778	109228958	reg1008538.p1	5.263	+	TSC_hg19_v1_chr2_+_109223602 AF527762 NM_001193482	-5251	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	-23899	+	TSC_hg19_v1_chr2_+_109204792 AF527763	-24083	+	TSC_hg19_v1_chr2_+_109237706 AK304260 NM_001193484 AF527760 AK310547	8835	+	AF527759 NM_001193485	42399	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	42620	+	AF527762|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193482|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527763|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK304260|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193484|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527760|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK310547|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527759|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193485|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3	0.983239	0.0	denovo_WM_7:65:0.495	denovo_WM_7:66:0.258	denovo_WM_7:67:0.230
chr5	159532783	159532950	reg1006988.p2	5.263	+	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	-96699	+	TSC_hg19_v1_chr5_+_159436145 AK315262	-96719	+	NM_000679 U03865 BC136568 BC136569 AK309989 L31773	-189041	+	TSC_hg19_v1_chr5_-_159546405 AB067522 BC035076 BC105110 BC143437 NM_001130864 NM_052927	13593	-	DQ132786 NM_001130958	81507	+	NM_001040442 AB528665	93214	+	AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##NM_000679|ADRA1B|147|adrenergic, alpha-1B-, receptor##U03865|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136568|ADRA1B|147|adrenergic, alpha-1B-, receptor##BC136569|ADRA1B|147|adrenergic, alpha-1B-, receptor##L31773|ADRA1B|147|adrenergic, alpha-1B-, receptor##AB067522|PWWP2A|114825|PWWP domain containing 2A##BC035076|PWWP2A|114825|PWWP domain containing 2A##BC105110|PWWP2A|114825|PWWP domain containing 2A##BC143437|PWWP2A|114825|PWWP domain containing 2A##NM_001130864|PWWP2A|114825|PWWP domain containing 2A##NM_052927|PWWP2A|114825|PWWP domain containing 2A##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal	0.996443	0.0	
chr9	5833060	5833216	reg1012393.p1	5.263	+	TSC_hg19_v1_chr9_-_5833082 NM_024896	-60	-	TSC_hg19_v1_chr9_-_5833067 AK127218	-71	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	-187	-	U06654 BC014423 AK312149 NM_005511 U06452	57716	+	BC108654 TSC_hg19_v1_chr9_-_5968443	135270	-	TSC_hg19_v1_chr9_-_6007953 NM_001017969	174826	-	NM_024896|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AK127218|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##U06654|MLANA|2315|melan-A##BC014423|MLANA|2315|melan-A##AK312149|MLANA|2315|melan-A##NM_005511|MLANA|2315|melan-A##U06452|MLANA|2315|melan-A##NM_001017969|KIAA2026|158358|KIAA2026	0.0	0.03973	
chr16	87108480	87108650	reg1010499.p1	5.262	+	BC100027 NM_005250	-496451	+	BC113437 BC113439 NM_005251	-507709	+	TSC_hg19_v1_chr16_-_86588803 AK023955 BC112057 BC112059 BC143702 BC143703 BC143704 BC143705 BC143707 NM_001159380 AK023060 AK096836 AK297726 NM_001159377 NM_001159378 NM_001159379 NM_022764	-519793	-	TSC_hg19_v1_chr16_-_87350760 AB528835 AM392822 AM393070	242235	-	TSC_hg19_v1_chr16_-_87350999 BC015536 AK026130 NM_001195124 NM_001195125	242421	-	TSC_hg19_v1_chr16_-_87417364 AY736035 AF428140 BC012748 BC002985 NM_024735	308797	-	BC100027|FOXL1|2300|forkhead box L1##NM_005250|FOXL1|2300|forkhead box L1##BC113437|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##BC113439|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##NM_005251|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##AK023955|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC112057|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC112059|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143702|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143703|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143704|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143705|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143707|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159380|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK023060|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK096836|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK297726|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159377|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159378|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159379|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_022764|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AM392822|C16orf95|100506581|chromosome 16 open reading frame 95##AM393070|C16orf95|100506581|chromosome 16 open reading frame 95##BC015536|C16orf95|100506581|chromosome 16 open reading frame 95##AK026130|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195124|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195125|C16orf95|100506581|chromosome 16 open reading frame 95##AY736035|FBXO31|79791|F-box protein 31##AF428140|FBXO31|79791|F-box protein 31##BC012748|FBXO31|79791|F-box protein 31##BC002985|FBXO31|79791|F-box protein 31##NM_024735|FBXO31|79791|F-box protein 31	0.957142	0.0	denovo_WM_7:17:0.276	denovo_WM_7:21:0.345
chr20	4921797	4921947	reg1012128.p1	5.262	+	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-117678	-	AY154472 NM_170774	-126104	-	AK313404 TSC_hg19_v1_chr20_+_4702555 BC043644 NM_012409 AF187843 AY358985	-219338	+	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	60288	-	BC013112 AF164142 NM_203327	69053	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	171743	-	CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154472|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_170774|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK313404|PRND|23627|prion protein 2 (dublet)##BC043644|PRND|23627|prion protein 2 (dublet)##NM_012409|PRND|23627|prion protein 2 (dublet)##AF187843|PRND|23627|prion protein 2 (dublet)##AY358985|PRND|23627|prion protein 2 (dublet)##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30	0.990761	0.0	denovo_WM_7:-62:0.491	denovo_WM_7:-63:0.286	denovo_WM_7:-64:0.214
chr6	37109623	37109773	reg1008216.p2	5.262	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-136197	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-155428	-	AK022783 TSC_hg19_v1_chr6_-_36953950 AF176006 AF192559 BC125055 BC153873 NM_014341 BC110914	-155721	-	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	28424	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	115688	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	115901	+	BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK315067|MTCH1|23787|mitochondrial carrier 1##AK022783|MTCH1|23787|mitochondrial carrier 1##AF176006|MTCH1|23787|mitochondrial carrier 1##AF192559|MTCH1|23787|mitochondrial carrier 1##BC125055|MTCH1|23787|mitochondrial carrier 1##BC153873|MTCH1|23787|mitochondrial carrier 1##NM_014341|MTCH1|23787|mitochondrial carrier 1##BC110914|MTCH1|23787|mitochondrial carrier 1##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B	1.008899	0.0	
chr7	98332477	98332586	reg1010452.p1	5.262	+	TSC_hg19_v1_chr7_+_98246596 NM_002523 BC035339 BC009924 BC034781 BC048275 DQ893052 DQ896300 U26662	-85795	+	NM_018842 TSC_hg19_v1_chr7_-_98030431	-302098	-	EU832667 EU832746 TSC_hg19_v1_chr7_-_98030403 AF119666 BC013888 AK309936	-302237	-	AM392947 AM393244 AM393838 AM393874 AB528254 AL834349 AL834348 AK312364 TSC_hg19_v1_chr7_-_98467565 BC037895	134999	-	AK225783 AK295543 BC030793 TSC_hg19_v1_chr7_-_98467638	135096	-	TSC_hg19_v1_chr7_-_98467663 NM_001134450 NM_001134451 NM_152913 AY358583	135145	-	NM_002523|NPTX2|4885|neuronal pentraxin II##BC035339|NPTX2|4885|neuronal pentraxin II##BC009924|NPTX2|4885|neuronal pentraxin II##BC034781|NPTX2|4885|neuronal pentraxin II##BC048275|NPTX2|4885|neuronal pentraxin II##DQ893052|NPTX2|4885|neuronal pentraxin II##DQ896300|NPTX2|4885|neuronal pentraxin II##U26662|NPTX2|4885|neuronal pentraxin II##NM_018842|BAIAP2L1|55971|BAI1-associated protein 2-like 1##EU832667|BAIAP2L1|55971|BAI1-associated protein 2-like 1##EU832746|BAIAP2L1|55971|BAI1-associated protein 2-like 1##AF119666|BAIAP2L1|55971|BAI1-associated protein 2-like 1##BC013888|BAIAP2L1|55971|BAI1-associated protein 2-like 1##AK309936|BAIAP2L1|55971|BAI1-associated protein 2-like 1##AM392947|TMEM130|222865|transmembrane protein 130##AM393244|TMEM130|222865|transmembrane protein 130##AM393838|TMEM130|222865|transmembrane protein 130##AM393874|TMEM130|222865|transmembrane protein 130##AL834349|TMEM130|222865|transmembrane protein 130##AL834348|TMEM130|222865|transmembrane protein 130##AK312364|TMEM130|222865|transmembrane protein 130##BC037895|TMEM130|222865|transmembrane protein 130##AK225783|TMEM130|222865|transmembrane protein 130##AK295543|TMEM130|222865|transmembrane protein 130##BC030793|TMEM130|222865|transmembrane protein 130##NM_001134450|TMEM130|222865|transmembrane protein 130##NM_001134451|TMEM130|222865|transmembrane protein 130##NM_152913|TMEM130|222865|transmembrane protein 130##AY358583|TMEM130|222865|transmembrane protein 130	0.996769	0.0	denovo_WM_7:42:0.975
chr1	205598296	205598406	reg1007356.p2	5.261	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	-60138	+	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	-60224	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-124529	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	2555	-	NM_001973 NM_021795	3648	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	51217	-	BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3	1.917951	0.0	denovo_WM_7:-28:0.924	denovo_WM_7:-43:0.478	denovo_WM_7:-44:0.483
chr4	99210672	99210805	reg1005900.p1	5.261	+	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-28144	+	CU691442 BC036870 NM_174952	-146393	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	-2449480	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	369021	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	639522	-	M15353 TSC_hg19_v1_chr4_-_99850288	639553	-	NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E	1.60079	0.0	denovo_WM_7:-10:0.389	denovo_WM_7:-14:0.228	denovo_WM_7:-25:0.438	denovo_WM_7:-29:0.220
chr7	140711814	140711897	reg1000227.p1	5.261	+	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	-87348	-	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	-315352	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-338917	+	AF151897 AK024776 NM_016071	2612	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	2895	-	NM_053035 TSC_hg19_v1_chr7_-_140714792	2931	-	AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33##NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33	1.320731	0.0	denovo_WM_7:-41:0.345	denovo_WM_7:-60:0.853
chr21	45338426	45338530	reg1008608.p2	5.260	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-53355	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-53418	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-128993	+	AK300562 NM_001037553	6800	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	93862	+	TSC_hg19_v1_chr21_+_45527202 AK314184	188724	+	NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.998499	0.0	denovo_WM_7:0:0.457	denovo_WM_7:0:0.457
chr2	88499648	88499748	reg1007570.p1	5.260	+	NM_018271 BC050699 BC035315 AK001778	-26942	+	NM_001244676 NM_001244678 AK289486 AK315831 BC064423	-29834	+	CR542090 AB527938 M10617 BC032801 M10050 TSC_hg19_v1_chr2_-_88427582 BC022287 NM_001443	-72106	-	NM_001135649	252354	-	AK058098 NM_152670 BC029522	324486	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	427280	-	NM_018271|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC050699|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC035315|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK001778|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##NM_001244676|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##NM_001244678|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK289486|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK315831|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC064423|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##CR542090|FABP1|2168|fatty acid binding protein 1, liver##M10617|FABP1|2168|fatty acid binding protein 1, liver##BC032801|FABP1|2168|fatty acid binding protein 1, liver##M10050|FABP1|2168|fatty acid binding protein 1, liver##BC022287|FABP1|2168|fatty acid binding protein 1, liver##NM_001443|FABP1|2168|fatty acid binding protein 1, liver##NM_001135649|FOXI3|344167|forkhead box I3##AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3	0.998064	0.0	denovo_WM_7:-8:0.234	denovo_WM_7:-9:0.234	denovo_WM_7:-10:0.234	denovo_WM_7:-11:0.234
chr20	62259801	62259926	reg1009079.p1	5.259	+	TSC_hg19_v1_chr20_-_62258426 AK298927	-1426	-	AB033095 TSC_hg19_v1_chr20_-_62258409 BC036305 NM_012384	-1488	-	TSC_hg19_v1_chr20_-_62205593 AB232667 BC035130 AK023724 NM_001037335	-54275	-	DQ893121 DQ896397 BC047671 BC021084 BC032527 AF069709 BC056873 TSC_hg19_v1_chr20_-_62284781 AK074860 NM_015894 AK310010 BC009381 BC025234	24897	-	AF217795 NM_016434 NM_032957	29299	+	TSC_hg19_v1_chr20_+_62289667 AK302508 AK304798 AK299332 BC000673	29818	+	AK298927|GMEB2|26205|glucocorticoid modulatory element binding protein 2##AB033095|GMEB2|26205|glucocorticoid modulatory element binding protein 2##BC036305|GMEB2|26205|glucocorticoid modulatory element binding protein 2##NM_012384|GMEB2|26205|glucocorticoid modulatory element binding protein 2##AB232667|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##BC035130|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##AK023724|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##NM_001037335|PRIC285|85441|peroxisomal proliferator-activated receptor A interacting complex 285##DQ893121|STMN3|50861|stathmin-like 3##DQ896397|STMN3|50861|stathmin-like 3##BC047671|STMN3|50861|stathmin-like 3##BC032527|STMN3|50861|stathmin-like 3##AF069709|STMN3|50861|stathmin-like 3##BC056873|STMN3|50861|stathmin-like 3##AK074860|STMN3|50861|stathmin-like 3##NM_015894|STMN3|50861|stathmin-like 3##AK310010|STMN3|50861|stathmin-like 3##BC009381|STMN3|50861|stathmin-like 3##BC025234|STMN3|50861|stathmin-like 3##AF217795|RTEL1|51750|regulator of telomere elongation helicase 1##NM_016434|RTEL1|51750|regulator of telomere elongation helicase 1##NM_032957|RTEL1|51750|regulator of telomere elongation helicase 1##AK302508|RTEL1|51750|regulator of telomere elongation helicase 1##AK304798|RTEL1|51750|regulator of telomere elongation helicase 1##AK299332|RTEL1|51750|regulator of telomere elongation helicase 1	0.0	0.0	
chr5	1793072	1793183	reg1008758.p2	5.259	+	TSC_hg19_v1_chr5_-_1634100 BC019918 BC045555 AK311210 AK311251	-159009	-	TSC_hg19_v1_chr5_-_1634097 BC020552 BC053586 BC044220 AK308990 AK315872 BC067863 BC014604 AK307076	-159058	-	TSC_hg19_v1_chr5_-_1594617 BC150558	-198496	-	TSC_hg19_v1_chr5_-_1799926 AB049654 AF151109 AF155653 BC020642	6796	-	TSC_hg19_v1_chr5_-_1799952 AK312001 BC104652 EF036487 NM_032479	6845	-	TSC_hg19_v1_chr5_+_1801520 NM_004553 AK022503 BC038664 AF044959 BC046155 CR456880 HQ257915	8385	+	BC019918|LOC728613|728613|programmed cell death 6 pseudogene##BC045555|LOC728613|728613|programmed cell death 6 pseudogene##AK311210|LOC728613|728613|programmed cell death 6 pseudogene##BC020552|LOC728613|728613|programmed cell death 6 pseudogene##BC053586|LOC728613|728613|programmed cell death 6 pseudogene##BC044220|LOC728613|728613|programmed cell death 6 pseudogene##AK308990|LOC728613|728613|programmed cell death 6 pseudogene##BC067863|LOC728613|728613|programmed cell death 6 pseudogene##BC014604|LOC728613|728613|programmed cell death 6 pseudogene##AK307076|LOC728613|728613|programmed cell death 6 pseudogene##BC150558|SDHAP3|728609|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3##AB049654|MRPL36|64979|mitochondrial ribosomal protein L36##AF151109|MRPL36|64979|mitochondrial ribosomal protein L36##AF155653|MRPL36|64979|mitochondrial ribosomal protein L36##BC020642|MRPL36|64979|mitochondrial ribosomal protein L36##AK312001|MRPL36|64979|mitochondrial ribosomal protein L36##BC104652|MRPL36|64979|mitochondrial ribosomal protein L36##EF036487|MRPL36|64979|mitochondrial ribosomal protein L36##NM_032479|MRPL36|64979|mitochondrial ribosomal protein L36##NM_004553|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##AK022503|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##BC038664|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##AF044959|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##BC046155|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##CR456880|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##HQ257915|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)	0.0	0.0	
chr21	35348039	35348159	reg1009883.p1	5.258	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-60007	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-157429	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-333244	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	97742	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	97830	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	388247	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.0	0.0	
chr5	142593458	142593637	reg1005191.p1	5.258	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-443239	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-443575	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-515976	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	189276	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	189559	-	BC015610 TSC_hg19_v1_chr5_-_142783214	189664	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.0	0.104801	
chr6	107077082	107077226	reg1006133.p1	5.258	+	TSC_hg19_v1_chr6_+_106960443 U83115	-116743	+	AK056705 NM_001624	-117425	+	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	-303491	-	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	126	-	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	343	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	272318	+	U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203	0.0	0.0	
chr9	132812840	132812985	reg1007565.p1	5.258	+	TSC_hg19_v1_chr9_-_132805496 NM_015033	-7424	-	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	-7558	-	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-215147	+	BC039728 NM_001136557 NM_001136558 NM_020960	3072	+	TSC_hg19_v1_chr9_+_132816196 BC143655	3279	+	TSC_hg19_v1_chr9_+_132816199 AK026244 AK225456 BC030147 AF376725 AX776003 BC110518 AK293092 AB385490 AB046844	3304	+	NM_015033|FNBP1|23048|formin binding protein 1##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107##BC143655|GPR107|57720|G protein-coupled receptor 107##AK026244|GPR107|57720|G protein-coupled receptor 107##AK225456|GPR107|57720|G protein-coupled receptor 107##BC030147|GPR107|57720|G protein-coupled receptor 107##AF376725|GPR107|57720|G protein-coupled receptor 107##BC110518|GPR107|57720|G protein-coupled receptor 107##AK293092|GPR107|57720|G protein-coupled receptor 107##AB046844|GPR107|57720|G protein-coupled receptor 107	0.994416	0.0	denovo_WM_7:20:0.489	denovo_WM_7:21:0.419
chr1	214721221	214721364	reg1009135.p1	5.257	+	TSC_hg19_v1_chr1_+_214454550 BC068511 BC049367 BC094747 BC057793 NM_020197 AF226053 BC098133 BC098276 BC098305 BC098335 BC028104 AK313868 AB590916 BC039890	-266855	+	BC024201 NM_002763	-559433	+	AK298182 TSC_hg19_v1_chr1_+_214161296 U44060	-560003	+	X82676 TSC_hg19_v1_chr1_-_214724620 BC017300 AK090596	3315	-	TSC_hg19_v1_chr1_-_214724946 AK298120 BX538306 AK291641	3607	-	TSC_hg19_v1_chr1_-_214724977 NM_005401	3706	-	BC068511|SMYD2|56950|SET and MYND domain containing 2##BC049367|SMYD2|56950|SET and MYND domain containing 2##BC094747|SMYD2|56950|SET and MYND domain containing 2##BC057793|SMYD2|56950|SET and MYND domain containing 2##NM_020197|SMYD2|56950|SET and MYND domain containing 2##AF226053|SMYD2|56950|SET and MYND domain containing 2##BC098133|SMYD2|56950|SET and MYND domain containing 2##BC098276|SMYD2|56950|SET and MYND domain containing 2##BC098305|SMYD2|56950|SET and MYND domain containing 2##BC098335|SMYD2|56950|SET and MYND domain containing 2##BC028104|SMYD2|56950|SET and MYND domain containing 2##AK313868|SMYD2|56950|SET and MYND domain containing 2##BC039890|SMYD2|56950|SET and MYND domain containing 2##BC024201|PROX1|5629|prospero homeobox 1##NM_002763|PROX1|5629|prospero homeobox 1##AK298182|PROX1|5629|prospero homeobox 1##U44060|PROX1|5629|prospero homeobox 1##X82676|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##BC017300|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK090596|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK298120|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK291641|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14	0.996856	0.0	denovo_WM_7:-30:0.710	denovo_WM_7:-31:0.275
chr4	1339469	1339649	reg1010151.p1	5.257	+	TSC_hg19_v1_chr4_+_1283693 AK296174 AK022515 AY236486 AK308901 AF084928 BC006470 AY189687 BT006957	-55853	+	TSC_hg19_v1_chr4_+_1283678 BC001225 NM_001017405 NM_005882 AK001088 AK022586 AK094253 AK300572	-55889	+	TSC_hg19_v1_chr4_+_1243060 AK125775 AK056133	-96391	+	TSC_hg19_v1_chr4_+_1341031 BC110331 AB040963 NM_020894 BC140901	1709	+	AK126919 NM_175918	45780	+	BC070112 NM_001013622 BC042071 NM_001174070	346293	-	AK296174|MAEA|10296|macrophage erythroblast attacher##AK022515|MAEA|10296|macrophage erythroblast attacher##AY236486|MAEA|10296|macrophage erythroblast attacher##AK308901|MAEA|10296|macrophage erythroblast attacher##AF084928|MAEA|10296|macrophage erythroblast attacher##BC006470|MAEA|10296|macrophage erythroblast attacher##AY189687|MAEA|10296|macrophage erythroblast attacher##BT006957|MAEA|10296|macrophage erythroblast attacher##BC001225|MAEA|10296|macrophage erythroblast attacher##NM_001017405|MAEA|10296|macrophage erythroblast attacher##NM_005882|MAEA|10296|macrophage erythroblast attacher##AK001088|MAEA|10296|macrophage erythroblast attacher##AK022586|MAEA|10296|macrophage erythroblast attacher##AK094253|MAEA|10296|macrophage erythroblast attacher##AK300572|MAEA|10296|macrophage erythroblast attacher##AK125775|C4orf42|92070|chromosome 4 open reading frame 42##AK056133|C4orf42|92070|chromosome 4 open reading frame 42##BC110331|KIAA1530|57654|KIAA1530##AB040963|KIAA1530|57654|KIAA1530##NM_020894|KIAA1530|57654|KIAA1530##BC140901|KIAA1530|57654|KIAA1530##AK126919|CRIPAK|285464|cysteine-rich PAK1 inhibitor##NM_175918|CRIPAK|285464|cysteine-rich PAK1 inhibitor##BC070112|FAM53A|152877|family with sequence similarity 53, member A##NM_001013622|FAM53A|152877|family with sequence similarity 53, member A##BC042071|FAM53A|152877|family with sequence similarity 53, member A##NM_001174070|FAM53A|152877|family with sequence similarity 53, member A	1.121833	0.0	denovo_WM_7:-102:0.266	denovo_WM_7:-103:0.717
chr7	72625429	72625567	reg1006330.p1	5.257	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	-56467	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-200256	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-228624	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	97326	-	AK057366 AY081948 AY081949 NM_178125	116586	-	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	116794	+	BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa	0.026859	0.0	
chr10	23702598	23702757	reg1009985.p1	5.256	+	BC035732 NM_153714	-68906	-	AB463998 NM_178161	-221219	+	BC117471 BC130380 NM_012228 BC018030 TSC_hg19_v1_chr10_+_23384507 AF151889 BC066305 AF122004 EU446941	-318194	+	AB188491 NM_001145373 TSC_hg19_v1_chr10_+_23728216	25533	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	281000	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	795111	+	BC035732|C10orf67|256815|chromosome 10 open reading frame 67##NM_153714|C10orf67|256815|chromosome 10 open reading frame 67##NM_178161|PTF1A|256297|pancreas specific transcription factor, 1a##BC117471|MSRB2|22921|methionine sulfoxide reductase B2##BC130380|MSRB2|22921|methionine sulfoxide reductase B2##NM_012228|MSRB2|22921|methionine sulfoxide reductase B2##BC018030|MSRB2|22921|methionine sulfoxide reductase B2##AF151889|MSRB2|22921|methionine sulfoxide reductase B2##BC066305|MSRB2|22921|methionine sulfoxide reductase B2##AF122004|MSRB2|22921|methionine sulfoxide reductase B2##EU446941|MSRB2|22921|methionine sulfoxide reductase B2##AB188491|OTUD1|220213|OTU domain containing 1##NM_001145373|OTUD1|220213|OTU domain containing 1##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217	0.998161	0.0	denovo_WM_7:-63:0.827
chr14	34817061	34817190	reg1010165.p1	5.256	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-396976	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1408635	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-2018589	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	114362	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	191760	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	282230	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.998261	0.0	denovo_WM_7:59:0.711	denovo_WM_7:60:0.276
chr21	17103334	17103514	reg1005937.p2	5.256	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-883	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-1099	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-666207	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	1781739	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	1781947	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	1881716	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	0.0	0.0	
chr2	198105083	198105206	reg1005643.p1	5.256	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-313700	-	BC137150 BC137151 AY358249 NM_213608	-430207	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-440731	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	70238	-	TSC_hg19_v1_chr2_-_198175459 BC063622	70329	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	70375	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	1.984632	0.0	denovo_WM_7:1:0.855	denovo_WM_7:-35:0.237	denovo_WM_7:-36:0.237	denovo_WM_7:-37:0.237	denovo_WM_7:-38:0.237
chr3	4549746	4549926	reg1001097.p1	5.256	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-14640	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-14708	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-14805	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	471280	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	471345	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	471518	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.0	0.0	
chrX	115075493	115075640	reg1000039.p3	5.256	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-247698	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-278524	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-279960	+	BC003645 TSC_hg19_v1_chrX_-_115085443	9873	-	AK313927 NM_000686 X87723 U16957	226429	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	492201	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.159289	
chr10	15134984	15135107	reg1010062.p1	5.255	+	BC029526 AK095538 AK295169 NM_001039844 TSC_hg19_v1_chr10_-_15130776	-4271	-	NM_001039702 NM_018324 BC050372 AK001844 AK001968	-49118	+	NM_001080836	-133608	+	NM_001097590 NM_006414 NM_183005 TSC_hg19_v1_chr10_+_15139195 AK223418	4147	+	AK314131 BC029034 NM_153244	4264	-	TSC_hg19_v1_chr10_+_15139363 AK057006 U77664 BC029494	4318	+	BC029526|ACBD7|414149|acyl-CoA binding domain containing 7##AK095538|ACBD7|414149|acyl-CoA binding domain containing 7##AK295169|ACBD7|414149|acyl-CoA binding domain containing 7##NM_001039844|ACBD7|414149|acyl-CoA binding domain containing 7##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase##NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##NM_001097590|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_006414|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_183005|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK223418|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK314131|C10orf111|221060|chromosome 10 open reading frame 111##BC029034|C10orf111|221060|chromosome 10 open reading frame 111##NM_153244|C10orf111|221060|chromosome 10 open reading frame 111##AK057006|RPP38|10557|ribonuclease P/MRP 38kDa subunit##U77664|RPP38|10557|ribonuclease P/MRP 38kDa subunit##BC029494|RPP38|10557|ribonuclease P/MRP 38kDa subunit	0.998839	0.043171	
chr19	13783534	13783694	reg1009485.p2	5.255	+	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	-166438	-	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-519434	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-522322	+	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	58965	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	75105	+	TSC_hg19_v1_chr19_+_13875323 NM_001031727 NM_032285	91706	+	AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130##NM_001031727|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##NM_032285|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	1.208997	0.0	
chr2	157295967	157296105	reg1009386.p2	5.255	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-3082	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-3170	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-3802	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	818257	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	886248	-	NM_001009959 AK296477	888120	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	3.051718	0.0	denovo_WM_7:-4:0.380	denovo_WM_7:10:0.373	denovo_WM_7:25:0.605	denovo_WM_7:-98:0.665
chr3	128995294	128995451	reg1009436.p1	5.255	+	TSC_hg19_v1_chr3_+_128968474 AK001724 AK123939 AK309821 AF100756 BC066650 AB047846 AB527280	-26861	+	TSC_hg19_v1_chr3_+_128968448 AK291693 NM_016128	-26925	+	AK054592 TSC_hg19_v1_chr3_-_128902766 BC000288 NM_001127192 NM_001127193 NM_001127194 NM_001127195 NM_001127196 NM_003418	-92554	-	TSC_hg19_v1_chr3_+_128997674 AF201934 NM_020187 BC088363 AK297501 AK309891 AK225264	2290	+	TSC_hg19_v1_chr3_+_128997745 BC010125 BC050686 NM_001006109 BC009993	2440	+	TSC_hg19_v1_chr3_-_129035130 BC000426 NM_006026	39728	-	AK001724|COPG|22820|coatomer protein complex, subunit gamma##AK123939|COPG|22820|coatomer protein complex, subunit gamma##AK309821|COPG|22820|coatomer protein complex, subunit gamma##AF100756|COPG|22820|coatomer protein complex, subunit gamma##BC066650|COPG|22820|coatomer protein complex, subunit gamma##AB047846|COPG|22820|coatomer protein complex, subunit gamma##AK291693|COPG|22820|coatomer protein complex, subunit gamma##NM_016128|COPG|22820|coatomer protein complex, subunit gamma##AK054592|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##BC000288|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127192|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127193|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127194|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127195|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_001127196|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##NM_003418|CNBP|7555|CCHC-type zinc finger, nucleic acid binding protein##AF201934|C3orf37|56941|chromosome 3 open reading frame 37##NM_020187|C3orf37|56941|chromosome 3 open reading frame 37##BC088363|C3orf37|56941|chromosome 3 open reading frame 37##AK297501|C3orf37|56941|chromosome 3 open reading frame 37##AK309891|C3orf37|56941|chromosome 3 open reading frame 37##AK225264|C3orf37|56941|chromosome 3 open reading frame 37##BC010125|C3orf37|56941|chromosome 3 open reading frame 37##BC050686|C3orf37|56941|chromosome 3 open reading frame 37##NM_001006109|C3orf37|56941|chromosome 3 open reading frame 37##BC009993|C3orf37|56941|chromosome 3 open reading frame 37##BC000426|H1FX|8971|H1 histone family, member X##NM_006026|H1FX|8971|H1 histone family, member X	0.0	0.0	
chr3	142897019	142897119	reg1007428.p1	5.255	+	BC067737 TSC_hg19_v1_chr3_+_142895211	-1898	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-58418	+	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	-176639	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	670198	-	NM_173552 AK315082	793583	+	TSC_hg19_v1_chr3_+_143690915 BC037293	793921	+	NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58	1.169524	0.0	
chr6	161777970	161778105	reg1012066.p1	5.255	+	TSC_hg19_v1_chr6_-_161695027 AK295826 AF156776 AY358506 BC020209 AK295548 AK295025 CR627395 AJ420473 AK299721 AK074208 AK297636 NM_020133	-82977	-	AK094629 TSC_hg19_v1_chr6_-_161413451	-364624	-	TSC_hg19_v1_chr6_+_161412887 BC136276 BC143735 BC143743 BC143750 AK307866	-365179	+	AK057286 NM_001080378 NM_152410 BC044227	1370132	+	GU345838 GU345839 GU345840 GU361466 GU361467 GU361468 GU361469 GU361470 TSC_hg19_v1_chr6_-_163148736	1370690	-	TSC_hg19_v1_chr6_-_163148797 AB245403 AK292590 BC022014	1370741	-	AK295826|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AF156776|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AY358506|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##BC020209|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK295548|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK295025|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##CR627395|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AJ420473|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK299721|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK074208|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK297636|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##NM_020133|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##BC136276|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143735|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143743|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143750|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AK307866|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AK057286|PACRG|135138|PARK2 co-regulated##NM_001080378|PACRG|135138|PARK2 co-regulated##NM_152410|PACRG|135138|PARK2 co-regulated##BC044227|PACRG|135138|PARK2 co-regulated##GU345838|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU345839|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU345840|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361466|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361467|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361468|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361469|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361470|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##AB245403|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##AK292590|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##BC022014|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)	0.998667	0.0	
chr12	56690132	56690207	reg1007973.p1	5.254	+	BC000105 TSC_hg19_v1_chr12_-_56679730 AF147410 AK293263	-10368	-	TSC_hg19_v1_chr12_+_56661038 BC026922 NM_001099337	-29118	+	BC047444 TSC_hg19_v1_chr12_+_56660935 AY358861	-29236	+	AF047042 CU679623 BC072016 TSC_hg19_v1_chr12_-_56694071 AK074956 AK296249	3862	-	TSC_hg19_v1_chr12_-_56694090 AK095856 BC010106	3927	-	TSC_hg19_v1_chr12_-_56694115 AK307625	3949	-	BC000105|CS|1431|citrate synthase##AF147410|CS|1431|citrate synthase##AK293263|CS|1431|citrate synthase##BC026922|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##NM_001099337|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##BC047444|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##AY358861|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##AF047042|CS|1431|citrate synthase##BC072016|CS|1431|citrate synthase##AK074956|CS|1431|citrate synthase##AK296249|CS|1431|citrate synthase##AK095856|CS|1431|citrate synthase##BC010106|CS|1431|citrate synthase##AK307625|CS|1431|citrate synthase	0.0	0.0	
chr14	73932147	73932327	reg1006122.p2	5.254	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-6946	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-6970	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-7005	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	25388	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	25426	+	TSC_hg19_v1_chr14_+_73957674 AY390535	25436	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	2.865602	0.0	denovo_WM_7:23:0.372	denovo_WM_7:24:0.221	denovo_WM_7:43:0.602	denovo_WM_7:59:0.946
chr2	227836546	227836726	reg1010313.p2	5.254	+	NM_001167608 NM_032276 TSC_hg19_v1_chr2_+_227700769 BC030293 AX775823 BC111056 AK074258 AX775825	-135906	+	TSC_hg19_v1_chr2_-_227664534 S62539	-172137	-	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	-173157	-	TSC_hg19_v1_chr2_-_228028922 X81053	192266	-	NM_000092	192638	-	NM_000091 X80031 TSC_hg19_v1_chr2_+_228029337	192674	+	NM_001167608|RHBDD1|84236|rhomboid domain containing 1##NM_032276|RHBDD1|84236|rhomboid domain containing 1##BC111056|RHBDD1|84236|rhomboid domain containing 1##AK074258|RHBDD1|84236|rhomboid domain containing 1##S62539|IRS1|3667|insulin receptor substrate 1##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1##X81053|COL4A4|1286|collagen, type IV, alpha 4##NM_000092|COL4A4|1286|collagen, type IV, alpha 4##NM_000091|COL4A3|1285|collagen, type IV, alpha 3 (Goodpasture antigen)##X80031|COL4A3|1285|collagen, type IV, alpha 3 (Goodpasture antigen)	0.996677	0.0	denovo_WM_7:-2:0.470	denovo_WM_7:-3:0.527
chr6	5507543	5507693	reg1005062.p2	5.254	+	TSC_hg19_v1_chr6_+_5261758 NM_006567 AK223423 BC020239 BC021112 BC014273	-245928	+	TSC_hg19_v1_chr6_+_5261294 AK312454	-246356	+	TSC_hg19_v1_chr6_-_5261177 NM_001164840 NM_001164841 NM_020408	-246452	-	AJ420483 TSC_hg19_v1_chr6_-_6007133 BC002683 AF136631 AF114833 AK314095	499523	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	500079	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	813267	-	NM_006567|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK223423|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC020239|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC021112|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK312454|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##NM_001164840|LYRM4|57128|LYR motif containing 4##NM_001164841|LYRM4|57128|LYR motif containing 4##NM_020408|LYRM4|57128|LYR motif containing 4##AJ420483|NRN1|51299|neuritin 1##BC002683|NRN1|51299|neuritin 1##AF136631|NRN1|51299|neuritin 1##AF114833|NRN1|51299|neuritin 1##AK314095|NRN1|51299|neuritin 1##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide	0.472639	0.0	denovo_WM_7:7:0.270
chr6	76491603	76491744	reg1008843.p1	5.254	+	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-32664	+	TSC_hg19_v1_chr6_+_76458926 NM_004999 BX647397 BC012598	-32757	+	AF307849 AB018340 TSC_hg19_v1_chr6_+_76312226 AF306508 AF196304	-179465	+	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	290626	-	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	1681476	-	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	3085582	+	AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_004999|MYO6|4646|myosin VI##BX647397|MYO6|4646|myosin VI##BC012598|MYO6|4646|myosin VI##AF307849|SENP6|26054|SUMO1/sentrin specific peptidase 6##AB018340|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF306508|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF196304|SENP6|26054|SUMO1/sentrin specific peptidase 6##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1	1.608112	0.0	denovo_WM_7:-15:0.458	denovo_WM_7:-30:0.305	denovo_WM_7:-31:0.313
chr7	112580104	112580284	reg1009172.p1	5.254	+	AL834437 AK299901 TSC_hg19_v1_chr7_-_112579931 BC114615 AK056380 NM_152556	-364	-	AK293311 TSC_hg19_v1_chr7_-_112430447 AK314460 AL136626 AK025482 NM_022484	-149751	-	NM_001134468 BC031976 AK096894 NM_182597	-459208	+	AK297464 AK312587 NM_001146266 AL161959 NM_001146267 TSC_hg19_v1_chr7_-_112726667	146301	-	BC030577 TSC_hg19_v1_chr7_-_112727780	147586	-	TSC_hg19_v1_chr7_-_112727812 AK309392 AF250237 AK302769	147613	-	AL834437|C7orf60|154743|chromosome 7 open reading frame 60##AK299901|C7orf60|154743|chromosome 7 open reading frame 60##BC114615|C7orf60|154743|chromosome 7 open reading frame 60##AK056380|C7orf60|154743|chromosome 7 open reading frame 60##NM_152556|C7orf60|154743|chromosome 7 open reading frame 60##AK293311|TMEM168|64418|transmembrane protein 168##AK314460|TMEM168|64418|transmembrane protein 168##AL136626|TMEM168|64418|transmembrane protein 168##AK025482|TMEM168|64418|transmembrane protein 168##NM_022484|TMEM168|64418|transmembrane protein 168##NM_001134468|C7orf53|286006|chromosome 7 open reading frame 53##BC031976|C7orf53|286006|chromosome 7 open reading frame 53##AK096894|C7orf53|286006|chromosome 7 open reading frame 53##NM_182597|C7orf53|286006|chromosome 7 open reading frame 53##AK297464|GPR85|54329|G protein-coupled receptor 85##AK312587|GPR85|54329|G protein-coupled receptor 85##NM_001146266|GPR85|54329|G protein-coupled receptor 85##AL161959|GPR85|54329|G protein-coupled receptor 85##NM_001146267|GPR85|54329|G protein-coupled receptor 85##BC030577|GPR85|54329|G protein-coupled receptor 85##AK309392|GPR85|54329|G protein-coupled receptor 85##AF250237|GPR85|54329|G protein-coupled receptor 85##AK302769|GPR85|54329|G protein-coupled receptor 85	0.0	0.0	
chr10	120879723	120879838	reg1001611.p2	5.253	+	TSC_hg19_v1_chr10_+_120863628 AF168713 AK000031 AK297633 AK297971 AK293136 BC022271 CU687018 CU692524	-16140	+	NM_207009 TSC_hg19_v1_chr10_+_120863621	-16163	+	TSC_hg19_v1_chr10_+_120863593 AK293365	-16200	+	CU687762 AY269785 TSC_hg19_v1_chr10_-_120925213 AK095295 BC063562 BC050475 NM_213649	45407	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	58523	-	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	58567	-	AF168713|FAM45A|404636|family with sequence similarity 45, member A##AK000031|FAM45A|404636|family with sequence similarity 45, member A##AK297633|FAM45A|404636|family with sequence similarity 45, member A##AK297971|FAM45B|55855|family with sequence similarity 45, member A pseudogene##AK293136|FAM45A|404636|family with sequence similarity 45, member A##BC022271|FAM45A|404636|family with sequence similarity 45, member A##NM_207009|FAM45A|404636|family with sequence similarity 45, member A##AK293365|FAM45A|404636|family with sequence similarity 45, member A##AY269785|SFXN4|119559|sideroflexin 4##AK095295|SFXN4|119559|sideroflexin 4##BC063562|SFXN4|119559|sideroflexin 4##BC050475|SFXN4|119559|sideroflexin 4##NM_213649|SFXN4|119559|sideroflexin 4##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3	1.995576	0.0	denovo_WM_7:1:0.244	denovo_WM_7:4:0.422	denovo_WM_7:-13:0.932
chr10	27525791	27525916	reg1009662.p1	5.253	+	TSC_hg19_v1_chr10_+_27444322 BC009107 AK225319	-81532	+	AK074804 TSC_hg19_v1_chr10_+_27444291 AK027719	-81574	+	AK022930 TSC_hg19_v1_chr10_-_27444222	-81645	-	TSC_hg19_v1_chr10_-_27529416 CU688904 AK295031 AK304842 BC025309 BC030555 BC011364 AK294510 NM_145698	3691	-	TSC_hg19_v1_chr10_-_27531030 AB082527	5162	-	TSC_hg19_v1_chr10_-_27531041 AK057469 AF505653 NM_001042473	5229	-	BC009107|MASTL|84930|microtubule associated serine/threonine kinase-like##AK225319|MASTL|84930|microtubule associated serine/threonine kinase-like##AK074804|MASTL|84930|microtubule associated serine/threonine kinase-like##AK027719|MASTL|84930|microtubule associated serine/threonine kinase-like##AK022930|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK295031|ACBD5|91452|acyl-CoA binding domain containing 5##AK304842|ACBD5|91452|acyl-CoA binding domain containing 5##BC025309|ACBD5|91452|acyl-CoA binding domain containing 5##BC030555|ACBD5|91452|acyl-CoA binding domain containing 5##BC011364|ACBD5|91452|acyl-CoA binding domain containing 5##AK294510|ACBD5|91452|acyl-CoA binding domain containing 5##NM_145698|ACBD5|91452|acyl-CoA binding domain containing 5##AB082527|ACBD5|91452|acyl-CoA binding domain containing 5##AK057469|ACBD5|91452|acyl-CoA binding domain containing 5##AF505653|ACBD5|91452|acyl-CoA binding domain containing 5##NM_001042473|ACBD5|91452|acyl-CoA binding domain containing 5	0.999544	0.0	
chr22	45999609	45999727	reg1007722.p1	5.253	+	TSC_hg19_v1_chr22_+_45898762 NM_001996 NM_006485 NM_006486 NM_006487 AK075566 AK075460 AK300806 AK316291 BC022497 AF217999 AF126110 U01244 X53741 X53742 X53743 AB528743 DQ894047	-100892	+	TSC_hg19_v1_chr22_+_45809599 BC003024 BC009904 AL442116	-190040	+	TSC_hg19_v1_chr22_+_45809579 AK098586 NM_015653 AK225722	-190099	+	NM_001167621 NM_013236 AK294348 TSC_hg19_v1_chr22_+_46067713	68027	+	TSC_hg19_v1_chr22_+_46067733 AF086923 AL050282	68061	+	AK025734 TSC_hg19_v1_chr22_+_46067746 AF119662 BC007508	68088	+	NM_001996|FBLN1|2192|fibulin 1##NM_006485|FBLN1|2192|fibulin 1##NM_006486|FBLN1|2192|fibulin 1##NM_006487|FBLN1|2192|fibulin 1##AK075566|FBLN1|2192|fibulin 1##AK075460|FBLN1|2192|fibulin 1##AK300806|FBLN1|2192|fibulin 1##AK316291|FBLN1|2192|fibulin 1##BC022497|FBLN1|2192|fibulin 1##AF217999|FBLN1|2192|fibulin 1##AF126110|FBLN1|2192|fibulin 1##U01244|FBLN1|2192|fibulin 1##X53741|FBLN1|2192|fibulin 1##X53742|FBLN1|2192|fibulin 1##X53743|FBLN1|2192|fibulin 1##DQ894047|FBLN1|2192|fibulin 1##BC003024|RIBC2|26150|RIB43A domain with coiled-coils 2##BC009904|RIBC2|26150|RIB43A domain with coiled-coils 2##AL442116|RIBC2|26150|RIB43A domain with coiled-coils 2##AK098586|RIBC2|26150|RIB43A domain with coiled-coils 2##NM_015653|RIBC2|26150|RIB43A domain with coiled-coils 2##AK225722|RIBC2|26150|RIB43A domain with coiled-coils 2##NM_001167621|ATXN10|25814|ataxin 10##NM_013236|ATXN10|25814|ataxin 10##AK294348|ATXN10|25814|ataxin 10##AF086923|ATXN10|25814|ataxin 10##AL050282|ATXN10|25814|ataxin 10##AK025734|ATXN10|25814|ataxin 10##AF119662|ATXN10|25814|ataxin 10##BC007508|ATXN10|25814|ataxin 10	0.993434	0.0	denovo_WM_7:-1:0.239	denovo_WM_7:-3:0.270	denovo_WM_7:-4:0.468
chr9	9606680	9606860	reg1001472.p1	5.253	+	TSC_hg19_v1_chr9_+_8858136 AK094342	-748637	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-872851	-	TSC_hg19_v1_chr9_+_8713275 AY779046	-893478	+	BC028038 NM_002839	1005952	-	NM_000550 X51420 BC052608	3086655	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	3168246	+	BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##AY779046|RPL18A|6142|ribosomal protein L18a##BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150	0.0	0.888585	CTCF.p2:-73:0.889
chr1	155509809	155509966	reg1008214.p1	5.252	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-215595	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-215945	-	BC052277 NM_001105205	-216160	+	AF257305 TSC_hg19_v1_chr1_-_155532251	22319	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	22480	-	TSC_hg19_v1_chr1_-_155532562 AK307595	22694	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.99753	0.0	denovo_WM_7:-20:0.884
chr19	11076580	11076731	reg1011146.p2	5.252	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-4831	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-4905	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-4940	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	18221	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	123422	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	123477	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	1.977953	0.0	denovo_WM_7:-2:0.719	denovo_WM_7:12:0.749
chr6	117928757	117928910	reg1006734.p1	5.252	+	TSC_hg19_v1_chr6_-_117923706 NM_001017408 NM_020399	-5119	-	TSC_hg19_v1_chr6_-_117923682 AF450008	-5147	-	TSC_hg19_v1_chr6_-_117923675 AK314486	-5160	-	TSC_hg19_v1_chr6_-_117996469 AK125564	67605	-	NM_138459 BC066910 TSC_hg19_v1_chr6_+_117996631	67791	+	TSC_hg19_v1_chr6_+_117996651 BC150654 BC150655 AK125119	67814	+	NM_001017408|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##NM_020399|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##AF450008|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##AK314486|GOPC|57120|golgi-associated PDZ and coiled-coil motif containing##NM_138459|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC066910|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC150654|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC150655|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##AK125119|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	1.553023	0.0	denovo_WM_7:-23:0.422	denovo_WM_7:-41:0.618
chr10	22994218	22994398	reg1001291.p3	5.251	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-268309	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-359852	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-384143	+	AK294817 TSC_hg19_v1_chr10_-_23003038	8729	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	9182	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	222673	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	1.986044	0.0	denovo_WM_7:55:0.233	denovo_WM_7:56:0.200	denovo_WM_7:76:0.232
chr18	55762087	55762267	reg1009108.p1	5.251	+	AF385931 NM_001144964	-47720	+	TSC_hg19_v1_chr18_+_55712924 AY243322	-49270	+	DQ890913 DQ893350 AY312514 TSC_hg19_v1_chr18_+_55711911	-50271	+	TSC_hg19_v1_chr18_+_55816551 AY112983 AY112984 DQ181796 NM_001144965 NM_001144968 NM_001144969 NM_001144971 AY112985	54380	+	TSC_hg19_v1_chr18_+_55862636 NM_001144970 AK294963 AY243318 AB007899	100553	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	126585	+	AF385931|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144964|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243322|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ890913|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ893350|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY312514|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY112983|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY112984|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##DQ181796|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144965|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144968|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144969|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144971|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY112985|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144970|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK294963|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243318|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AB007899|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like	0.9911	0.0	denovo_WM_7:-33:0.228	denovo_WM_7:-34:0.228	denovo_WM_7:-35:0.228	denovo_WM_7:-36:0.228
chr19	5324253	5324347	reg1010250.p1	5.251	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-291401	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-355127	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-355176	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	16494	-	AK098722 NM_181710 AK292251 BC017592	131126	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	298458	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	1.936445	0.0	denovo_WM_7:-39:0.859	denovo_WM_7:-54:0.883
chr2	114531628	114531808	reg1008164.p2	5.251	+	AK025657 AK315719 TSC_hg19_v1_chr2_-_114514220 BC050096 BC018537 NM_025181	-17421	-	AF529364 CU676258 TSC_hg19_v1_chr2_-_114514079 AY358620	-17640	-	TSC_hg19_v1_chr2_+_114384849 AK289496 AF095350 AF095351 BC126129 BC144050 BC144052	-146812	+	TSC_hg19_v1_chr2_+_114647549 BC044590 NM_005721 AF127773	115829	+	TSC_hg19_v1_chr2_+_114647665 AK316213	115947	+	TSC_hg19_v1_chr2_+_114647673 AK303988	115954	+	AK025657|SLC35F5|80255|solute carrier family 35, member F5##AK315719|SLC35F5|80255|solute carrier family 35, member F5##BC050096|SLC35F5|80255|solute carrier family 35, member F5##BC018537|SLC35F5|80255|solute carrier family 35, member F5##NM_025181|SLC35F5|80255|solute carrier family 35, member F5##AF529364|SLC35F5|80255|solute carrier family 35, member F5##AY358620|SLC35F5|80255|solute carrier family 35, member F5##AK289496|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095350|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##AF095351|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC126129|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144050|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC144052|RABL2A|11159|RAB, member of RAS oncogene family-like 2A##BC044590|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##NM_005721|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AF127773|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK316213|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK303988|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)	0.791524	0.0	denovo_WM_7:-21:0.311	denovo_WM_7:-22:0.301
chr22	18283579	18283759	reg1000941.p1	5.251	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-26335	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-26446	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-26462	-	TSC_hg19_v1_chr22_-_18484268 AK127487	200559	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	223592	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	277019	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.0	0.0	
chr8	129005430	129005574	reg1009800.p1	5.251	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-198719	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-257012	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-257177	+	AB042405 NM_031415	1793631	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1946413	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1946504	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.0	0.0	
chr15	101728259	101728439	reg1002044.p1	5.250	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-268837	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-268875	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-308278	+	AB071402 TSC_hg19_v1_chr15_-_101791795	63387	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	63786	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	89314	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.0	0.0	
chr5	158202011	158202191	reg1003034.p1	5.250	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-916011	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1017721	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1031361	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	324356	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	324641	-	AK304228 NM_001199382	432547	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.994824	0.0	denovo_WM_7:-100:0.736
chr6	43054021	43054201	reg1006071.p2	5.250	+	TSC_hg19_v1_chr6_+_43044048 NM_002821 NM_152880 NM_152881 NM_152882 U33635 BC071557 BC002377 BC014626 AK292589 AF531868 AF531869 AF531870 AF531871 AF531872 U40271 AB209350 AK291016	-10034	+	NM_201522 AK127894	-25873	+	AK094102 NM_201523 AK055293 BX640717	-26481	+	NM_003131 TSC_hg19_v1_chr6_+_43139027 BC052572 J03161	84942	+	TSC_hg19_v1_chr6_+_43139192 BC048211	85082	+	TSC_hg19_v1_chr6_+_43139204 AB209128 AB464198	85182	+	NM_002821|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152880|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152881|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_152882|PTK7|5754|PTK7 protein tyrosine kinase 7##U33635|PTK7|5754|PTK7 protein tyrosine kinase 7##BC071557|PTK7|5754|PTK7 protein tyrosine kinase 7##BC002377|PTK7|5754|PTK7 protein tyrosine kinase 7##BC014626|PTK7|5754|PTK7 protein tyrosine kinase 7##AK292589|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531868|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531869|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531870|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531871|PTK7|5754|PTK7 protein tyrosine kinase 7##AF531872|PTK7|5754|PTK7 protein tyrosine kinase 7##U40271|PTK7|5754|PTK7 protein tyrosine kinase 7##AB209350|PTK7|5754|PTK7 protein tyrosine kinase 7##AK291016|PTK7|5754|PTK7 protein tyrosine kinase 7##NM_201522|KLC4|89953|kinesin light chain 4##AK127894|KLC4|89953|kinesin light chain 4##AK094102|KLC4|89953|kinesin light chain 4##NM_201523|KLC4|89953|kinesin light chain 4##AK055293|KLC4|89953|kinesin light chain 4##BX640717|KLC4|89953|kinesin light chain 4##NM_003131|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC052572|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##J03161|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC048211|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##AB209128|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)	0.996135	0.0	denovo_WM_7:50:0.972
chr19	10706423	10706526	reg1007981.p1	5.249	+	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	-8526	-	TSC_hg19_v1_chr19_-_10679653 NM_001800 BC001822 NM_079421	-26836	-	CR542158 CU674892 U20498 DQ892872 DQ892951 DQ896120 AB464505 U49399 U40343 TSC_hg19_v1_chr19_-_10679530	-27045	-	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	6659	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	29745	+	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	58037	-	BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_001800|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##BC001822|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##NM_079421|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##CR542158|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U20498|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892872|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892951|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ896120|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U49399|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U40343|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727	1.331334	0.0	denovo_WM_7:-4:0.644	denovo_WM_7:-5:0.311	denovo_WM_7:-67:0.336
chr5	111940827	111940947	reg1008615.p1	5.249	+	AB030240 BC114942 BC114632 TSC_hg19_v1_chr5_-_111754966 BC031042 NM_022140	-186014	-	TSC_hg19_v1_chr5_+_111496560 AB002437	-444318	+	AK298779 NM_001142474 NM_001142475	-628313	-	TSC_hg19_v1_chr5_+_112043199 NM_001127511 AK294544	102324	+	NM_000038 NM_001127510 TSC_hg19_v1_chr5_+_112073584 BC034955 BC056268 AB210001	132686	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	256042	+	AB030240|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114942|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114632|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC031042|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##NM_022140|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##AB002437|EPB41L4A-AS1|114915|EPB41L4A antisense RNA 1 (non-protein coding)##AK298779|C5orf13|9315|chromosome 5 open reading frame 13##NM_001142474|C5orf13|9315|chromosome 5 open reading frame 13##NM_001142475|C5orf13|9315|chromosome 5 open reading frame 13##NM_001127511|APC|324|adenomatous polyposis coli##AK294544|APC|324|adenomatous polyposis coli##NM_000038|APC|324|adenomatous polyposis coli##NM_001127510|APC|324|adenomatous polyposis coli##BC034955|APC|324|adenomatous polyposis coli##BC056268|APC|324|adenomatous polyposis coli##AB210001|APC|324|adenomatous polyposis coli##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa	0.092277	0.0	
chrX	17755062	17755198	reg1005140.p1	5.249	+	AY456992 NM_001136024	-101718	+	TSC_hg19_v1_chrX_+_17393877 GQ988776	-361250	+	TSC_hg19_v1_chrX_+_17393806 BC136415 BC171763	-361319	+	TSC_hg19_v1_chrX_+_17755572 BC026159 NM_001037535 NM_001037536 NM_001037540 NM_006746 AK313993 BC009193 AF160728	465	+	AK056214 AK298873 AK314631 NM_001172732 NM_001172739 NM_001172743 NM_021785	124275	-	DQ892470 DQ895683 BC096745 BC037301 AK128155 NM_001184767 NM_153346	483818	-	AY456992|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_001136024|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##GQ988776|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC136415|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC171763|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC026159|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_001037535|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_001037536|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_001037540|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##NM_006746|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##AK313993|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##BC009193|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##AF160728|SCML1|6322|sex comb on midleg-like 1 (Drosophila)##AK056214|RAI2|10742|retinoic acid induced 2##AK298873|RAI2|10742|retinoic acid induced 2##AK314631|RAI2|10742|retinoic acid induced 2##NM_001172732|RAI2|10742|retinoic acid induced 2##NM_001172739|RAI2|10742|retinoic acid induced 2##NM_001172743|RAI2|10742|retinoic acid induced 2##NM_021785|RAI2|10742|retinoic acid induced 2##DQ892470|BEND2|139105|BEN domain containing 2##DQ895683|BEND2|139105|BEN domain containing 2##BC096745|BEND2|139105|BEN domain containing 2##BC037301|BEND2|139105|BEN domain containing 2##AK128155|BEND2|139105|BEN domain containing 2##NM_001184767|BEND2|139105|BEN domain containing 2##NM_153346|BEND2|139105|BEN domain containing 2	0.997718	0.0	denovo_WM_7:6:0.470	denovo_WM_7:7:0.527
chr2	85151030	85151204	reg1007945.p1	5.248	+	TSC_hg19_v1_chr2_+_85133055 M92381	-18055	+	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	-18322	+	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	-42814	-	TSC_hg19_v1_chr2_+_85198299 NM_020122	47167	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	47374	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	209542	+	M92381|TMSB10|9168|thymosin beta 10##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)	0.999208	0.0	denovo_WM_7:-21:0.239	denovo_WM_7:-22:0.239	denovo_WM_7:-23:0.239	denovo_WM_7:-24:0.239
chr1	41169107	41169234	reg1010380.p2	5.247	+	TSC_hg19_v1_chr1_-_41157737 AK094323	-11447	-	TSC_hg19_v1_chr1_+_41157659 NM_001142590 AK127677	-11503	+	TSC_hg19_v1_chr1_+_41157505 D89986 U78774	-11662	+	AF191744 AB385526 BT020081 U62296 TSC_hg19_v1_chr1_+_41204591	35380	+	TSC_hg19_v1_chr1_+_41249485 AF105202 NM_004700 NM_172163	80411	+	TSC_hg19_v1_chr1_+_41284599 AK074957	115447	+	AK094323|LOC100130557|100130557|uncharacterized LOC100130557##NM_001142590|NFYC|4802|nuclear transcription factor Y, gamma##AK127677|NFYC|4802|nuclear transcription factor Y, gamma##D89986|NFYC|4802|nuclear transcription factor Y, gamma##U78774|NFYC|4802|nuclear transcription factor Y, gamma##AF191744|NFYC|4802|nuclear transcription factor Y, gamma##BT020081|NFYC|4802|nuclear transcription factor Y, gamma##U62296|NFYC|4802|nuclear transcription factor Y, gamma##AF105202|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##NM_004700|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##NM_172163|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##AK074957|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4	0.994184	0.0	denovo_WM_7:-10:0.477	denovo_WM_7:-11:0.425
chr3	122019960	122020071	reg1008541.p1	5.247	+	NM_001178065 U20760	-116835	+	NM_000388 U20759	-117486	+	NM_006889 NM_176892 U04343	-223293	+	NM_005213 AK291308 BC010379 X05978 CR456914	24059	+	BC019231 BC109378 TSC_hg19_v1_chr3_-_122102079 BC054051 BC062725 NM_001017928	82062	-	NM_014367 AK026030 BC010896 BC015060 AF201944 AF107495 AF250321 TSC_hg19_v1_chr3_+_122103076 AK293994 AF191020	83053	+	NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule##NM_005213|CSTA|1475|cystatin A (stefin A)##AK291308|CSTA|1475|cystatin A (stefin A)##BC010379|CSTA|1475|cystatin A (stefin A)##X05978|CSTA|1475|cystatin A (stefin A)##CR456914|CSTA|1475|cystatin A (stefin A)##BC109378|CCDC58|131076|coiled-coil domain containing 58##BC054051|CCDC58|131076|coiled-coil domain containing 58##BC062725|CCDC58|131076|coiled-coil domain containing 58##NM_001017928|CCDC58|131076|coiled-coil domain containing 58##NM_014367|FAM162A|26355|family with sequence similarity 162, member A##AK026030|FAM162A|26355|family with sequence similarity 162, member A##BC010896|FAM162A|26355|family with sequence similarity 162, member A##BC015060|FAM162A|26355|family with sequence similarity 162, member A##AF201944|FAM162A|26355|family with sequence similarity 162, member A##AF107495|FAM162A|26355|family with sequence similarity 162, member A##AF250321|FAM162A|26355|family with sequence similarity 162, member A##AK293994|FAM162A|26355|family with sequence similarity 162, member A##AF191020|FAM162A|26355|family with sequence similarity 162, member A	0.0	0.0	
chr3	171515303	171515475	reg1008893.p1	5.247	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-337318	-	NM_000340	-770622	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-770856	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	12866	-	NM_001164436 AK026825	45759	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	242026	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	0.036248	0.0	
chr8	2511944	2512124	reg1009521.p1	5.247	+	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-518832	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-559126	+	TSC_hg19_v1_chr8_+_1950340 BC169332	-561682	+	AK128880 TSC_hg19_v1_chr8_-_2585966	73948	-	AY017307 TSC_hg19_v1_chr8_-_4852228	2340191	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	2340260	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##BC169332|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	0.0	0.0	
chr1	33593796	33593909	reg1007843.p2	5.246	+	TSC_hg19_v1_chr1_+_33546755 BC028128 NM_052998 AK095127 AL832640 AK057051 AK315677 AY325129 BC010449	-47119	+	TSC_hg19_v1_chr1_-_33502485 NM_001199199 NM_001625 NM_013411	-91352	-	AB005622 TSC_hg19_v1_chr1_-_33502470	-91377	-	TSC_hg19_v1_chr1_-_33647643 AX775827 AX775829 AX776017 AK122896 NM_018207	53796	-	TSC_hg19_v1_chr1_+_33722167 NM_152493	128313	+	TSC_hg19_v1_chr1_-_33813262 AK055807	219444	-	BC028128|ADC|113451|arginine decarboxylase##NM_052998|ADC|113451|arginine decarboxylase##AK095127|ADC|113451|arginine decarboxylase##AL832640|ADC|113451|arginine decarboxylase##AK057051|ADC|113451|arginine decarboxylase##AK315677|ADC|113451|arginine decarboxylase##AY325129|ADC|113451|arginine decarboxylase##BC010449|ADC|113451|arginine decarboxylase##NM_001199199|AK2|204|adenylate kinase 2##NM_001625|AK2|204|adenylate kinase 2##NM_013411|AK2|204|adenylate kinase 2##AB005622|AK2|204|adenylate kinase 2##AK122896|TRIM62|55223|tripartite motif containing 62##NM_018207|TRIM62|55223|tripartite motif containing 62##NM_152493|ZNF362|149076|zinc finger protein 362	0.996485	0.0	
chr13	76221750	76221930	reg1008389.p2	5.246	+	TSC_hg19_v1_chr13_+_76210470 AK092052 AX747335	-11370	+	AF330045 NM_005358	-27271	+	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	-97916	+	NM_015842 TSC_hg19_v1_chr13_+_76334854 AK304051 AB020665	113000	+	BC013764 TSC_hg19_v1_chr13_-_77460431	1238560	-	TSC_hg19_v1_chr13_-_77460541 AF359381 AK128363 AK311268 AK311543 NM_138444	1238767	-	AK092052|LMO7|4008|LIM domain 7##AF330045|LMO7|4008|LIM domain 7##NM_005358|LMO7|4008|LIM domain 7##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_015842|LMO7|4008|LIM domain 7##AK304051|LMO7|4008|LIM domain 7##AB020665|LMO7|4008|LIM domain 7##BC013764|KCTD12|115207|potassium channel tetramerisation domain containing 12##AF359381|KCTD12|115207|potassium channel tetramerisation domain containing 12##AK128363|KCTD12|115207|potassium channel tetramerisation domain containing 12##NM_138444|KCTD12|115207|potassium channel tetramerisation domain containing 12	0.83958	0.0	denovo_WM_7:-5:0.360	denovo_WM_7:-6:0.229
chr15	41694839	41694922	reg1001280.p2	5.246	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	-218	-	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	-69715	+	AK307728 AK222819 AK290879 AK293168 BC011008 AF217513 TSC_hg19_v1_chr15_+_41625080 AK225703 AL833611 AK023483 BC024772 AF090915 AF290612 BC001308 BC012887	-69799	+	TSC_hg19_v1_chr15_+_41709329 NM_015138 AK292302 D87440 BC015052 AB383821	14480	+	NM_002220 TSC_hg19_v1_chr15_+_41786071 BC026331 X54938 AB463780	91210	+	BC143903 D16105 AK314006 BC045607 X60702 AK296892 NM_001135685 NM_002344 NM_206961	111158	-	AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##AK307728|NUSAP1|51203|nucleolar and spindle associated protein 1##AK222819|NUSAP1|51203|nucleolar and spindle associated protein 1##AK290879|NUSAP1|51203|nucleolar and spindle associated protein 1##AK293168|NUSAP1|51203|nucleolar and spindle associated protein 1##BC011008|NUSAP1|51203|nucleolar and spindle associated protein 1##AF217513|NUSAP1|51203|nucleolar and spindle associated protein 1##AK225703|NUSAP1|51203|nucleolar and spindle associated protein 1##AL833611|NUSAP1|51203|nucleolar and spindle associated protein 1##AK023483|NUSAP1|51203|nucleolar and spindle associated protein 1##BC024772|NUSAP1|51203|nucleolar and spindle associated protein 1##AF090915|NUSAP1|51203|nucleolar and spindle associated protein 1##AF290612|NUSAP1|51203|nucleolar and spindle associated protein 1##BC001308|NUSAP1|51203|nucleolar and spindle associated protein 1##BC012887|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_015138|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK292302|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##D87440|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC015052|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_002220|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC026331|ITPKA|3706|inositol-trisphosphate 3-kinase A##X54938|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC143903|LTK|4058|leukocyte receptor tyrosine kinase##D16105|LTK|4058|leukocyte receptor tyrosine kinase##AK314006|LTK|4058|leukocyte receptor tyrosine kinase##BC045607|LTK|4058|leukocyte receptor tyrosine kinase##X60702|LTK|4058|leukocyte receptor tyrosine kinase##AK296892|LTK|4058|leukocyte receptor tyrosine kinase##NM_001135685|LTK|4058|leukocyte receptor tyrosine kinase##NM_002344|LTK|4058|leukocyte receptor tyrosine kinase##NM_206961|LTK|4058|leukocyte receptor tyrosine kinase	0.994636	0.0	
chr19	49832783	49832906	reg1002210.p1	5.246	+	BC034948 BC039336 NM_014037	-4391	-	AK000048 TSC_hg19_v1_chr19_+_49669495	-163394	+	TSC_hg19_v1_chr19_+_49661048 AK074664 AF497623 AK292862 AY297044 AY297045 AY297046 AY046396 AJ575813 BC132727 BC144122 BC144123 AK295820	-171778	+	TSC_hg19_v1_chr19_+_49838662 AK301016	5814	+	TSC_hg19_v1_chr19_+_49838683 NM_001040031 NM_001774 AK301328	5834	+	TSC_hg19_v1_chr19_+_49838702 AL833693 BC110379	5868	+	BC034948|SLC6A16|28968|solute carrier family 6, member 16##NM_014037|SLC6A16|28968|solute carrier family 6, member 16##AK000048|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AF497623|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK292862|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297044|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297045|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297046|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY046396|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AJ575813|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC132727|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144122|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144123|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK295820|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK301016|CD37|951|CD37 molecule##NM_001040031|CD37|951|CD37 molecule##NM_001774|CD37|951|CD37 molecule##AK301328|CD37|951|CD37 molecule##AL833693|CD37|951|CD37 molecule##BC110379|CD37|951|CD37 molecule	1.875607	0.0	denovo_WM_7:37:0.881	denovo_WM_7:52:0.889
chr6	73400358	73400513	reg1001535.p4	5.246	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	-68374	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	-68546	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	-68865	+	BC004267 NM_001126063	534739	-	TSC_hg19_v1_chr6_-_73972815 BC022080 NM_030568 AK054891	572431	-	TSC_hg19_v1_chr6_+_73972992 BC031876 AK094485	572538	+	AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC004267|KHDC1L|100129128|KH homology domain containing 1-like##NM_001126063|KHDC1L|100129128|KH homology domain containing 1-like##BC022080|KHDC1|80759|KH homology domain containing 1##NM_030568|KHDC1|80759|KH homology domain containing 1	0.998684	0.0	denovo_WM_7:8:0.206	denovo_WM_7:10:0.206	denovo_WM_7:11:0.533
chr13	47231686	47231849	reg1004060.p3	5.245	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-104260	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-104347	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-104444	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	139548	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	239300	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1343684	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	1.983901	0.0	denovo_WM_7:67:0.494	denovo_WM_7:68:0.494	denovo_WM_7:-97:0.497	denovo_WM_7:-98:0.326
chr2	151886432	151886541	reg1009659.p2	5.245	+	X97758 BC012513 TSC_hg19_v1_chr2_-_151344182 AK298007 AK311312 NM_005168 AK313224	-542322	-	TSC_hg19_v1_chr2_-_150444290 NM_015702	-1442179	-	TSC_hg19_v1_chr2_-_150444250 BC023995 BC010894 AK310001 AF161510 BC022859 BC000932	-1442229	-	TSC_hg19_v1_chr2_-_152118378 BC136410 BC136411 AK127552 NM_198557	231847	-	TSC_hg19_v1_chr2_-_152146171 BC001268	259666	-	U32849 AK124323 TSC_hg19_v1_chr2_-_152146429 AK291548 AK298754 NM_004688	259917	-	X97758|RND3|390|Rho family GTPase 3##BC012513|RND3|390|Rho family GTPase 3##AK298007|RND3|390|Rho family GTPase 3##NM_005168|RND3|390|Rho family GTPase 3##AK313224|RND3|390|Rho family GTPase 3##NM_015702|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC023995|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC010894|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##AK310001|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##AF161510|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC022859|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC000932|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC136410|RBM43|375287|RNA binding motif protein 43##BC136411|RBM43|375287|RNA binding motif protein 43##AK127552|RBM43|375287|RNA binding motif protein 43##NM_198557|RBM43|375287|RNA binding motif protein 43##BC001268|NMI|9111|N-myc (and STAT) interactor##U32849|NMI|9111|N-myc (and STAT) interactor##AK124323|NMI|9111|N-myc (and STAT) interactor##AK291548|NMI|9111|N-myc (and STAT) interactor##AK298754|NMI|9111|N-myc (and STAT) interactor##NM_004688|NMI|9111|N-myc (and STAT) interactor	0.982288	0.0	denovo_WM_7:8:0.796
chr3	59843386	59843521	reg1006952.p1	5.245	+	BC050317 TSC_hg19_v1_chr3_-_59035759	-807693	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-807712	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	-807745	-	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	1393637	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	1703758	+	BC047734 TSC_hg19_v1_chr3_+_61547294	1703833	+	BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	0.994245	0.0	denovo_WM_7:-11:0.331	denovo_WM_7:-12:0.331	denovo_WM_7:-13:0.331
chr1	88066053	88066232	reg1010558.p1	5.244	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-268727	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-268817	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-271461	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	1083953	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	1291069	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	1291131	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	1.779029	0.0	denovo_WM_7:-30:0.419	denovo_WM_7:55:0.494	denovo_WM_7:56:0.494
chr21	45144505	45144685	reg1005264.p1	5.243	+	U89606 CU674050 AB529123 TSC_hg19_v1_chr21_+_45139241	-5388	+	TSC_hg19_v1_chr21_+_45139035 AB621819	-5562	+	TSC_hg19_v1_chr21_+_45138987 BC000123	-5606	+	TSC_hg19_v1_chr21_+_45161415 AY303972	16793	+	AL110184 TSC_hg19_v1_chr21_+_45178006	33339	+	BT007040 CR542148 DQ890923 DQ894073 TSC_hg19_v1_chr21_-_45196190 AK312133 BC003370	51576	-	U89606|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##BC000123|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##AY303972|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##AL110184|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##BT007040|CSTB|1476|cystatin B (stefin B)##CR542148|CSTB|1476|cystatin B (stefin B)##DQ890923|CSTB|1476|cystatin B (stefin B)##DQ894073|CSTB|1476|cystatin B (stefin B)##AK312133|CSTB|1476|cystatin B (stefin B)##BC003370|CSTB|1476|cystatin B (stefin B)	0.998544	0.0	denovo_WM_7:-24:0.533	denovo_WM_7:-25:0.206	denovo_WM_7:-27:0.206
chr5	154444875	154445042	reg1010565.p2	5.243	+	NM_001099293 AK302388	-51672	+	TSC_hg19_v1_chr5_+_154320654 NM_001014990 NM_014180 AK000601 AK302784 CR933679 BC012565 AF161507 CU680362	-124309	+	TSC_hg19_v1_chr5_-_154317760 AB385260 AY063750 AK022748 BC113614 BC143724 BC036894 BC040931 AK074066 AK315101 NM_001252156 NM_015465	-127242	-	BX537948 NM_000337 NM_001128209 NM_172244	1308802	+	TSC_hg19_v1_chr5_+_155754172 BC020740 AK292794	1309215	+	CU679215 AK301337 AK312746 BC008988 NM_001146726 NM_138379	1945277	-	NM_001099293|KIF4B|285643|kinesin family member 4B##AK302388|KIF4B|285643|kinesin family member 4B##NM_001014990|MRPL22|29093|mitochondrial ribosomal protein L22##NM_014180|MRPL22|29093|mitochondrial ribosomal protein L22##AK000601|MRPL22|29093|mitochondrial ribosomal protein L22##AK302784|MRPL22|29093|mitochondrial ribosomal protein L22##CR933679|MRPL22|29093|mitochondrial ribosomal protein L22##BC012565|MRPL22|29093|mitochondrial ribosomal protein L22##AF161507|MRPL22|29093|mitochondrial ribosomal protein L22##AY063750|GEMIN5|25929|gem (nuclear organelle) associated protein 5##AK022748|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC113614|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC143724|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC036894|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC040931|GEMIN5|25929|gem (nuclear organelle) associated protein 5##AK074066|GEMIN5|25929|gem (nuclear organelle) associated protein 5##AK315101|GEMIN5|25929|gem (nuclear organelle) associated protein 5##NM_001252156|GEMIN5|25929|gem (nuclear organelle) associated protein 5##NM_015465|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BX537948|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_000337|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_001128209|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##NM_172244|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##BC020740|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##AK292794|SGCD|6444|sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)##AK301337|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##AK312746|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##BC008988|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##NM_001146726|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4##NM_138379|TIMD4|91937|T-cell immunoglobulin and mucin domain containing 4	0.998817	0.0	denovo_WM_7:38:0.518	denovo_WM_7:39:0.462
chr9	28774668	28774760	reg1002811.p2	5.242	+	AK056372 NM_152570	-55412	-	AK057806 JN681271 NM_145005	-1200873	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	-1201243	-	TSC_hg19_v1_chr9_+_32384618 NM_002197 AF261088	3609876	+	TSC_hg19_v1_chr9_+_32384622 AK057904	3609913	+	TSC_hg19_v1_chr9_+_32384648 AK308752 Z11559	3609935	+	AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2##AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##NM_002197|ACO1|48|aconitase 1, soluble##AF261088|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble##AK308752|ACO1|48|aconitase 1, soluble##Z11559|ACO1|48|aconitase 1, soluble	0.0	0.065866	
chrX	149647508	149647688	reg1003551.p2	5.242	+	NM_001177466 NM_005491 U46023 BC136324 AB527434 AK315217	-33816	+	TSC_hg19_v1_chrX_+_149531583 NM_001177465 AK294478	-116036	+	TSC_hg19_v1_chrX_+_149529838 AK302612	-117765	+	TSC_hg19_v1_chrX_+_149737070 NM_000252 AK291710 U46024 AK297057 AK304036	89448	+	AL832715 AK297021 BC030779 TSC_hg19_v1_chrX_+_149737092	89506	+	TSC_hg19_v1_chrX_+_149861868 BC032947 NM_003828 AK226109 AF057354 AJ224979	214323	+	NM_001177466|MAMLD1|10046|mastermind-like domain containing 1##NM_005491|MAMLD1|10046|mastermind-like domain containing 1##U46023|MAMLD1|10046|mastermind-like domain containing 1##BC136324|MAMLD1|10046|mastermind-like domain containing 1##AK315217|MAMLD1|10046|mastermind-like domain containing 1##NM_001177465|MAMLD1|10046|mastermind-like domain containing 1##AK294478|MAMLD1|10046|mastermind-like domain containing 1##AK302612|MAMLD1|10046|mastermind-like domain containing 1##NM_000252|MTM1|4534|myotubularin 1##AK291710|MTM1|4534|myotubularin 1##U46024|MTM1|4534|myotubularin 1##AK297057|MTM1|4534|myotubularin 1##AK304036|MTM1|4534|myotubularin 1##AL832715|MTM1|4534|myotubularin 1##AK297021|MTM1|4534|myotubularin 1##BC030779|MTM1|4534|myotubularin 1##BC032947|MTMR1|8776|myotubularin related protein 1##NM_003828|MTMR1|8776|myotubularin related protein 1##AK226109|MTMR1|8776|myotubularin related protein 1##AF057354|MTMR1|8776|myotubularin related protein 1##AJ224979|MTMR1|8776|myotubularin related protein 1	0.0	0.0	
chr10	74023468	74023577	reg1008401.p1	5.241	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-47411	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-47734	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-47758	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	10302	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	91156	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	91404	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	0.98895	0.0	denovo_WM_7:32:0.976
chr1	204482696	204482792	reg1001161.p2	5.241	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-18979	-	BC132876 BC136645 BC144342 NM_002646 AK308153	-23246	-	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	-101804	-	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	2758	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	2866	+	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	171847	-	BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC132876|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC136645|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC144342|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_002646|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AK308153|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2	0.299106	0.063537	denovo_WM_7:-86:0.209
chr12	122256772	122256864	reg1007700.p1	5.241	+	TSC_hg19_v1_chr12_+_122242580 NM_015048 JF813787	-14207	+	TSC_hg19_v1_chr12_-_122240852 AK311480	-15961	-	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	-25244	-	CU692906 DQ892664 DQ896049 BC024287 BC014790 X72389 TSC_hg19_v1_chr12_-_122296766 AK290826 NM_002150	39875	-	AK057510 NM_001171993	69698	-	TSC_hg19_v1_chr12_+_122326731 AB003177 NM_002813 AK315389 BC002383 BC004184 BC004213 DQ893594 EU831432 EU831524 AB528684	69877	+	NM_015048|SETD1B|23067|SET domain containing 1B##JF813787|SETD1B|23067|SET domain containing 1B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)##DQ892664|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##DQ896049|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##BC024287|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##BC014790|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##X72389|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##AK290826|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_002150|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##AK057510|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_001171993|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_002813|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##AK315389|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC002383|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004184|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004213|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##DQ893594|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831432|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831524|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	0.998858	0.0	denovo_WM_7:-12:0.314	denovo_WM_7:-13:0.314	denovo_WM_7:-14:0.314
chr3	136468588	136468725	reg1009691.p1	5.241	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	-499454	+	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	-499492	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	-553975	-	TSC_hg19_v1_chr3_-_136471221 BC040708 AB210023 AK309934 BC064699 CR749247 NM_005862	2559	-	BC050423 NM_001097599 NM_001097600 NM_025246 TSC_hg19_v1_chr3_+_136537897 BC022557 AK314079 BC000111 AL136661	69263	+	TSC_hg19_v1_chr3_+_136581071 NM_006153 BC006403	112384	+	S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##BC040708|STAG1|10274|stromal antigen 1##AB210023|STAG1|10274|stromal antigen 1##AK309934|STAG1|10274|stromal antigen 1##BC064699|STAG1|10274|stromal antigen 1##CR749247|STAG1|10274|stromal antigen 1##NM_005862|STAG1|10274|stromal antigen 1##BC050423|TMEM22|80723|transmembrane protein 22##NM_001097599|TMEM22|80723|transmembrane protein 22##NM_001097600|TMEM22|80723|transmembrane protein 22##NM_025246|TMEM22|80723|transmembrane protein 22##BC022557|TMEM22|80723|transmembrane protein 22##AK314079|TMEM22|80723|transmembrane protein 22##BC000111|TMEM22|80723|transmembrane protein 22##AL136661|TMEM22|80723|transmembrane protein 22##NM_006153|NCK1|4690|NCK adaptor protein 1##BC006403|NCK1|4690|NCK adaptor protein 1	1.983184	0.0	denovo_WM_7:-62:0.778	denovo_WM_7:103:0.798
chr12	112226035	112226158	reg1009826.p1	5.240	+	TSC_hg19_v1_chr12_+_112204765 AY621070 BC002967 X05409 AK223373 AK301375 Y00109 AK314856 BC071839 AB385105 CR456991 CU678320	-21348	+	NM_000690 NM_001204889 TSC_hg19_v1_chr12_+_112204694	-21404	+	AK092356 AK310923 AX747497 TSC_hg19_v1_chr12_+_112123871 AL832043 BC015056 AY323912 BC126358	-102190	+	TSC_hg19_v1_chr12_-_112279735 BC071748 BC007973 BC015633 BC032560 AK124158 BC107695	53636	-	AK122767 TSC_hg19_v1_chr12_+_112280039	53816	+	BC041049 TSC_hg19_v1_chr12_+_112280044	53977	+	AY621070|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC002967|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##X05409|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK223373|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK301375|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##Y00109|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK314856|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC071839|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##CR456991|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##NM_000690|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##NM_001204889|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK092356|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AK310923|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AL832043|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC015056|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AY323912|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC126358|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC007973|C12orf47|51275|chromosome 12 open reading frame 47##BC015633|C12orf47|51275|chromosome 12 open reading frame 47##BC032560|C12orf47|51275|chromosome 12 open reading frame 47##AK122767|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC041049|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5	0.990923	0.543801	denovo_WM_7:-63:0.501	CTCF.p2:67:0.544	denovo_WM_7:-69:0.213
chr14	59605442	59605551	reg1011314.p1	5.240	+	TSC_hg19_v1_chr14_+_59104741 NM_001079520 NM_016651	-500750	+	AK302579 NM_001244193 AK310356 AK302718	-699070	+	NM_014749 BC066647	-710765	+	TSC_hg19_v1_chr14_+_59655450 BX648383 BC064999 NM_014992 BC038428 AK291790 AK021890 BX247986	49908	+	TSC_hg19_v1_chr14_-_59931852 DQ893361 DQ896680 AY288418 M76676	326426	-	TSC_hg19_v1_chr14_-_59932051 BC032831 NM_022571	326560	-	NM_001079520|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##NM_016651|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##AK302579|KIAA0586|9786|KIAA0586##NM_001244193|KIAA0586|9786|KIAA0586##AK310356|KIAA0586|9786|KIAA0586##AK302718|KIAA0586|9786|KIAA0586##NM_014749|KIAA0586|9786|KIAA0586##BC066647|KIAA0586|9786|KIAA0586##BC064999|DAAM1|23002|dishevelled associated activator of morphogenesis 1##NM_014992|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BC038428|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK291790|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK021890|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BX247986|DAAM1|23002|dishevelled associated activator of morphogenesis 1##DQ893361|GPR135|64582|G protein-coupled receptor 135##DQ896680|GPR135|64582|G protein-coupled receptor 135##AY288418|GPR135|64582|G protein-coupled receptor 135##M76676|GPR135|64582|G protein-coupled receptor 135##BC032831|GPR135|64582|G protein-coupled receptor 135##NM_022571|GPR135|64582|G protein-coupled receptor 135	0.975779	0.0	denovo_WM_7:-65:0.953
chr22	50979652	50979770	reg1009982.p2	5.240	+	NM_001014440	-8704	-	BC127934 BC127935 TSC_hg19_v1_chr22_-_50970579	-9146	-	TSC_hg19_v1_chr22_-_50968479 NM_001113755 NM_001953	-11215	-	BC009980 NM_138433	6750	+	NM_001123225	21616	-	BC143071 BC150318 D87812 U62733 BC142954 NM_001145137	36713	-	NM_001014440|ODF3B|440836|outer dense fiber of sperm tails 3B##BC127934|ODF3B|440836|outer dense fiber of sperm tails 3B##BC127935|ODF3B|440836|outer dense fiber of sperm tails 3B##NM_001113755|TYMP|1890|thymidine phosphorylase##NM_001953|TYMP|1890|thymidine phosphorylase##BC009980|KLHDC7B|113730|kelch domain containing 7B##NM_138433|KLHDC7B|113730|kelch domain containing 7B##NM_001123225|SYCE3|644186|synaptonemal complex central element protein 3##BC143071|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##BC150318|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##D87812|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##U62733|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##BC142954|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##NM_001145137|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)	0.995485	0.0	denovo_WM_7:43:0.974
chr1	28258282	28258394	reg1005752.p1	5.239	+	TSC_hg19_v1_chr1_-_28241258 BC021257 NM_002946	-17074	-	CR450348 DQ892352 DQ895821 TSC_hg19_v1_chr1_-_28241083 J05249 BC001630 AK300691 AK312956 AK296898 AK298759 BC012157	-17289	-	CR749321 BC132692 BC133049 NM_001039477 NM_001105556 NM_004848 TSC_hg19_v1_chr1_+_28199054 AK303141 HQ258751 BC031655 AK303090	-59266	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	3223	+	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	28180	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	156786	-	BC021257|RPA2|6118|replication protein A2, 32kDa##NM_002946|RPA2|6118|replication protein A2, 32kDa##CR450348|RPA2|6118|replication protein A2, 32kDa##DQ892352|RPA2|6118|replication protein A2, 32kDa##DQ895821|RPA2|6118|replication protein A2, 32kDa##J05249|RPA2|6118|replication protein A2, 32kDa##BC001630|RPA2|6118|replication protein A2, 32kDa##AK300691|RPA2|6118|replication protein A2, 32kDa##AK312956|RPA2|6118|replication protein A2, 32kDa##AK298759|RPA2|6118|replication protein A2, 32kDa##BC012157|RPA2|6118|replication protein A2, 32kDa##CR749321|C1orf38|9473|chromosome 1 open reading frame 38##BC132692|C1orf38|9473|chromosome 1 open reading frame 38##BC133049|C1orf38|9473|chromosome 1 open reading frame 38##NM_001039477|C1orf38|9473|chromosome 1 open reading frame 38##NM_001105556|C1orf38|9473|chromosome 1 open reading frame 38##NM_004848|C1orf38|9473|chromosome 1 open reading frame 38##AK303141|C1orf38|9473|chromosome 1 open reading frame 38##HQ258751|C1orf38|9473|chromosome 1 open reading frame 38##BC031655|C1orf38|9473|chromosome 1 open reading frame 38##AK303090|C1orf38|9473|chromosome 1 open reading frame 38##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)	0.995478	0.0	
chr19	10117046	10117155	reg1009564.p1	5.239	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	-69976	-	BC031971 TSC_hg19_v1_chr19_+_9946188	-170936	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	-171149	+	TSC_hg19_v1_chr19_-_10121181 AF177941 NM_015719	4043	-	DQ426888 AF229845 NM_015725	6792	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	79686	+	DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2##BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF177941|COL5A3|50509|collagen, type V, alpha 3##NM_015719|COL5A3|50509|collagen, type V, alpha 3##AF229845|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_015725|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66	0.959054	0.0	denovo_WM_7:34:0.733
chr2	153018222	153018361	reg1009547.p1	5.238	+	TSC_hg19_v1_chr2_-_152955813 AK291378	-62480	-	AF038852 AB302276 BC075049 NM_000726 NM_001145798 U95020	-62744	-	AK294398 AK316045 TSC_hg19_v1_chr2_-_152955250 NM_001005746	-63061	-	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	14059	-	TSC_hg19_v1_chr2_+_153191687 NM_052905	173379	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	173682	+	AK291378|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AF038852|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AB302276|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##BC075049|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##NM_000726|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##NM_001145798|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##U95020|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AK294398|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AK316045|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##NM_001005746|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_052905|FMNL2|114793|formin-like 2##BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2	0.992314	0.0	denovo_WM_7:54:0.783
chr22	35752517	35752614	reg1008407.p1	5.238	+	TSC_hg19_v1_chr22_+_35695886 AK097066 AK297827 AK295918 AK296670 AK314522 AK097926 CR456595 BC005144 BC040006 BC046151 AB463301 CU013195 CU013483 CU692314	-56669	+	TSC_hg19_v1_chr22_+_35695855 NM_001135730 NM_001135732 NM_005488 AK026576 AJ006973 AY358980	-56734	+	AK293694 NM_001135729	-57298	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	24503	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	24561	+	AF051791 TSC_hg19_v1_chr22_+_35779219	26597	+	AK097066|TOM1|10043|target of myb1 (chicken)##AK297827|TOM1|10043|target of myb1 (chicken)##AK295918|TOM1|10043|target of myb1 (chicken)##AK296670|TOM1|10043|target of myb1 (chicken)##AK314522|TOM1|10043|target of myb1 (chicken)##AK097926|TOM1|10043|target of myb1 (chicken)##CR456595|TOM1|10043|target of myb1 (chicken)##BC040006|TOM1|10043|target of myb1 (chicken)##BC046151|TOM1|10043|target of myb1 (chicken)##CU013195|TOM1|10043|target of myb1 (chicken)##CU013483|TOM1|10043|target of myb1 (chicken)##NM_001135730|TOM1|10043|target of myb1 (chicken)##NM_001135732|TOM1|10043|target of myb1 (chicken)##NM_005488|TOM1|10043|target of myb1 (chicken)##AK026576|TOM1|10043|target of myb1 (chicken)##AJ006973|TOM1|10043|target of myb1 (chicken)##AY358980|TOM1|10043|target of myb1 (chicken)##AK293694|TOM1|10043|target of myb1 (chicken)##NM_001135729|TOM1|10043|target of myb1 (chicken)##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##AF051791|HMOX1|3162|heme oxygenase (decycling) 1	0.996211	0.0	denovo_WM_7:-30:0.899
chr9	6703858	6704013	reg1008774.p1	5.238	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-58308	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-290530	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-290738	+	AK310439 NM_001146696	16927	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	53732	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	54104	+	BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C	0.997199	0.0	denovo_WM_7:-45:0.976
chr1	29537492	29537672	reg1007647.p2	5.237	+	NM_005626 TSC_hg19_v1_chr1_-_29508638	-28943	-	TSC_hg19_v1_chr1_-_29508396 AK310528 AK293706 AK223444	-29184	-	AK291509 BC002781 TSC_hg19_v1_chr1_-_29508360	-29216	-	TSC_hg19_v1_chr1_-_29557417 AK226084 CR456703 AB528613	19798	-	TSC_hg19_v1_chr1_-_29557437 AK300889 AK025830 AK095099 AK225687 BC001419 AF151821 NM_001024732 NM_016011 AK315274	19865	-	TSC_hg19_v1_chr1_+_29563016 NM_001195001 NM_005704 NM_133177 NM_133178 X97198 U73727 BC146655 X95712 U71075	25466	+	NM_005626|SRSF4|6429|serine/arginine-rich splicing factor 4##AK310528|SRSF4|6429|serine/arginine-rich splicing factor 4##AK293706|SRSF4|6429|serine/arginine-rich splicing factor 4##AK223444|SRSF4|6429|serine/arginine-rich splicing factor 4##AK291509|SRSF4|6429|serine/arginine-rich splicing factor 4##BC002781|SRSF4|6429|serine/arginine-rich splicing factor 4##AK226084|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##CR456703|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK300889|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK025830|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK095099|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK225687|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##BC001419|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AF151821|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_001024732|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_016011|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK315274|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_001195001|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_005704|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133177|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133178|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X97198|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U73727|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##BC146655|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X95712|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U71075|PTPRU|10076|protein tyrosine phosphatase, receptor type, U	0.992511	0.0	denovo_WM_7:25:0.445	denovo_WM_7:29:0.226
chr14	50022415	50022523	reg1010088.p2	5.237	+	AK309211 NM_001113498	-1878313	-	BC028193 NM_182830	-2210054	-	AM392934 AB528225 AB063608 BC066312 AK130863 BC014310 NM_080746	-2901486	-	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	30624	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	42991	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	64875	-	AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC028193|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_182830|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##AM392934|RPL10L|140801|ribosomal protein L10-like##AB063608|RPL10L|140801|ribosomal protein L10-like##BC066312|RPL10L|140801|ribosomal protein L10-like##AK130863|RPL10L|140801|ribosomal protein L10-like##BC014310|RPL10L|140801|ribosomal protein L10-like##NM_080746|RPL10L|140801|ribosomal protein L10-like##BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like	0.99773	0.0	denovo_WM_7:11:0.238	denovo_WM_7:12:0.238	denovo_WM_7:13:0.238	denovo_WM_7:14:0.238
chr17	40495337	40495508	reg1008494.p2	5.237	+	TSC_hg19_v1_chr17_+_40440515 AK301457 BC027036 AB208972 L41142	-54897	+	NM_003152 U43185	-55858	+	TSC_hg19_v1_chr17_-_40428410 U47686 AB208920 BC020868 BC065227 NM_012448	-66990	-	TSC_hg19_v1_chr17_-_40540461 BC014482 NM_213662 BC000627 BC029783 AK297994	44992	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	45110	-	TSC_hg19_v1_chr17_-_40540580 AK291933	45170	-	AK301457|STAT5A|6776|signal transducer and activator of transcription 5A##BC027036|STAT5A|6776|signal transducer and activator of transcription 5A##AB208972|STAT5A|6776|signal transducer and activator of transcription 5A##L41142|STAT5A|6776|signal transducer and activator of transcription 5A##NM_003152|STAT5A|6776|signal transducer and activator of transcription 5A##U43185|STAT5A|6776|signal transducer and activator of transcription 5A##U47686|STAT5B|6777|signal transducer and activator of transcription 5B##AB208920|STAT5B|6777|signal transducer and activator of transcription 5B##BC020868|STAT5B|6777|signal transducer and activator of transcription 5B##BC065227|STAT5B|6777|signal transducer and activator of transcription 5B##NM_012448|STAT5B|6777|signal transducer and activator of transcription 5B##BC014482|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_213662|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC000627|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC029783|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK297994|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)	0.98286	0.0	
chr2	38905095	38905205	reg1008612.p1	5.237	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-11895	+	NM_138801 TSC_hg19_v1_chr2_+_38893054	-12098	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-75009	-	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	73366	-	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	100205	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	197878	-	BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	0.998546	0.0	denovo_WM_7:17:0.449	denovo_WM_7:18:0.449
chr7	129139223	129139329	reg1010845.p2	5.236	+	TSC_hg19_v1_chr7_+_129074283 NM_001134336 NM_020704 AK290165 BC019064 AB032996 CU676366 AB463039 AM392619 AM392944 AM392960 AM393447	-65003	+	AK316073 NM_001130722	-123793	+	TSC_hg19_v1_chr7_+_129008062 AK025372	-131188	+	BC050400 NM_001195243 BC035417	3088	+	TSC_hg19_v1_chr7_-_129251474 AK123679	112202	-	TSC_hg19_v1_chr7_+_129251531 NM_005011	112265	+	NM_001134336|FAM40B|57464|family with sequence similarity 40, member B##NM_020704|FAM40B|57464|family with sequence similarity 40, member B##AK290165|FAM40B|57464|family with sequence similarity 40, member B##BC019064|FAM40B|57464|family with sequence similarity 40, member B##AB032996|FAM40B|57464|family with sequence similarity 40, member B##AM392619|FAM40B|57464|family with sequence similarity 40, member B##AM392944|FAM40B|57464|family with sequence similarity 40, member B##AM392960|FAM40B|57464|family with sequence similarity 40, member B##AM393447|FAM40B|57464|family with sequence similarity 40, member B##AK316073|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130722|AHCYL2|23382|adenosylhomocysteinase-like 2##AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2##BC050400|LOC100287482|100287482|uncharacterized LOC100287482##NM_001195243|LOC100287482|100287482|uncharacterized LOC100287482##BC035417|LOC100287482|100287482|uncharacterized LOC100287482##NM_005011|NRF1|4899|nuclear respiratory factor 1	1.952435	0.0	denovo_WM_7:59:0.844	denovo_WM_7:74:0.853
chr15	52554281	52554411	reg1009407.p1	5.235	+	AF161352 TSC_hg19_v1_chr15_-_52529707	-24640	-	NM_016194	-70782	-	TSC_hg19_v1_chr15_+_52472257 AF007131	-82011	+	AF272390 BC144611 BC064841 TSC_hg19_v1_chr15_-_52587968 AK301079 AK304136 NM_018728	33588	-	TSC_hg19_v1_chr15_-_52821078 AB290180 AK303660 AK307600 NM_000259 NM_001142495 U90942 Y07759	266910	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	306713	-	AF161352|MYO5C|55930|myosin VC##NM_016194|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973##AF272390|MYO5C|55930|myosin VC##BC144611|MYO5C|55930|myosin VC##BC064841|MYO5C|55930|myosin VC##AK301079|MYO5C|55930|myosin VC##AK304136|MYO5C|55930|myosin VC##NM_018728|MYO5C|55930|myosin VC##AB290180|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK303660|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK307600|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_000259|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_001142495|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##U90942|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##Y07759|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa	0.0	0.0	
chr19	56652195	56652344	reg1007390.p2	5.235	+	TSC_hg19_v1_chr19_-_56632646 BC012495 BC077728 NM_001002836	-19623	-	TSC_hg19_v1_chr19_-_56632629 BC037737	-19655	-	AB527195 AY054986 AY154460 NM_153447	-141179	+	TSC_hg19_v1_chr19_+_56652664 NM_001253792 NM_018337 AL834130 AK223408	336	+	AK001999 TSC_hg19_v1_chr19_+_56652694 AB052954 AB052955 BC021282	429	+	AF188492 AF188493 NM_001145546 NM_033106	35119	+	BC012495|ZNF787|126208|zinc finger protein 787##BC077728|ZNF787|126208|zinc finger protein 787##NM_001002836|ZNF787|126208|zinc finger protein 787##BC037737|ZNF787|126208|zinc finger protein 787##AY054986|NLRP5|126206|NLR family, pyrin domain containing 5##AY154460|NLRP5|126206|NLR family, pyrin domain containing 5##NM_153447|NLRP5|126206|NLR family, pyrin domain containing 5##NM_001253792|ZNF444|55311|zinc finger protein 444##NM_018337|ZNF444|55311|zinc finger protein 444##AL834130|ZNF444|55311|zinc finger protein 444##AK223408|ZNF444|55311|zinc finger protein 444##AK001999|ZNF444|55311|zinc finger protein 444##AB052954|ZNF444|55311|zinc finger protein 444##AB052955|ZNF444|55311|zinc finger protein 444##BC021282|ZNF444|55311|zinc finger protein 444##AF188492|GALP|85569|galanin-like peptide##AF188493|GALP|85569|galanin-like peptide##NM_001145546|GALP|85569|galanin-like peptide##NM_033106|GALP|85569|galanin-like peptide	0.0	0.0	
chr9	5465087	5465201	reg1008642.p1	5.235	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-14637	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-27264	-	X00949 DQ893302 DQ896468 BC005956 NM_006911	-125336	-	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	45519	+	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	163983	+	BC036853 TSC_hg19_v1_chr9_-_5630098	164946	-	NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##X00949|RLN1|6013|relaxin 1##DQ893302|RLN1|6013|relaxin 1##DQ896468|RLN1|6013|relaxin 1##BC005956|RLN1|6013|relaxin 1##NM_006911|RLN1|6013|relaxin 1##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46	0.998941	0.0	denovo_WM_7:-47:0.314	denovo_WM_7:-48:0.314	denovo_WM_7:-49:0.314
chr11	107711452	107711592	reg1007986.p1	5.234	+	BC104185 BC113930 BC113987 BC104150 BC094685 AK312097 BC005261 U96094 NM_003063	-128763	-	TSC_hg19_v1_chr11_+_107462073 BC028725	-249446	+	TSC_hg19_v1_chr11_+_107461998 AK303689 AK054794	-249537	+	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	17983	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	18066	-	NM_017515	18391	-	BC104185|SLN|6588|sarcolipin##BC113930|SLN|6588|sarcolipin##BC113987|SLN|6588|sarcolipin##BC104150|SLN|6588|sarcolipin##BC094685|SLN|6588|sarcolipin##AK312097|SLN|6588|sarcolipin##BC005261|SLN|6588|sarcolipin##U96094|SLN|6588|sarcolipin##NM_003063|SLN|6588|sarcolipin##BC028725|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK303689|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK054794|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##NM_017515|SLC35F2|54733|solute carrier family 35, member F2	0.804089	0.0	denovo_WM_7:-19:0.747
chr12	120559653	120559787	reg1001649.p1	5.234	+	TSC_hg19_v1_chr12_+_120554697 BC041995 AK130486	-5011	+	TSC_hg19_v1_chr12_-_120554632 NM_001167606 NM_006861	-5081	-	TSC_hg19_v1_chr12_-_120554558 AK300127	-5155	-	TSC_hg19_v1_chr12_-_120632504 AB587307 AK297271 BC153881 D86973 NM_006836	72768	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	79181	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	79190	-	NM_001167606|RAB35|11021|RAB35, member RAS oncogene family##NM_006861|RAB35|11021|RAB35, member RAS oncogene family##AK300127|RAB35|11021|RAB35, member RAS oncogene family##AK297271|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC153881|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##D86973|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##NM_006836|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0	0.044103	0.0	
chr2	74698910	74699079	reg1010524.p2	5.234	+	TSC_hg19_v1_chr2_-_74692541 AK313355 NM_001146158 NM_006302	-6444	-	TSC_hg19_v1_chr2_-_74692510 X87237 BC002804 BC028337 AK307991	-6482	-	BC117250 BC117252 BC143934 TSC_hg19_v1_chr2_-_74692487 AK292553 AK304655	-6540	-	TSC_hg19_v1_chr2_-_74699815 BC012163 NM_053050	865	-	HQ258495 TSC_hg19_v1_chr2_-_74710051 BC117269 BC143398 BC143399 AK075543	11066	-	TSC_hg19_v1_chr2_+_74710207 BC060805 NM_022492 BC045536 AK090520 AX746494 AK022850 AK225626 AK303105 AK303245 BC096709 BC098114 BC098365 BC099729 AK223355 AK301585 BC036017 BX648131 BC047084	11213	+	AK313355|MOGS|7841|mannosyl-oligosaccharide glucosidase##NM_001146158|MOGS|7841|mannosyl-oligosaccharide glucosidase##NM_006302|MOGS|7841|mannosyl-oligosaccharide glucosidase##X87237|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC002804|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC028337|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK307991|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117250|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117252|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC143934|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK292553|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK304655|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC012163|MRPL53|116540|mitochondrial ribosomal protein L53##NM_053050|MRPL53|116540|mitochondrial ribosomal protein L53##HQ258495|CCDC142|84865|coiled-coil domain containing 142##BC117269|CCDC142|84865|coiled-coil domain containing 142##BC143398|CCDC142|84865|coiled-coil domain containing 142##BC143399|CCDC142|84865|coiled-coil domain containing 142##AK075543|CCDC142|84865|coiled-coil domain containing 142##BC060805|TTC31|64427|tetratricopeptide repeat domain 31##NM_022492|TTC31|64427|tetratricopeptide repeat domain 31##BC045536|TTC31|64427|tetratricopeptide repeat domain 31##AK090520|TTC31|64427|tetratricopeptide repeat domain 31##AK022850|TTC31|64427|tetratricopeptide repeat domain 31##AK225626|TTC31|64427|tetratricopeptide repeat domain 31##AK303105|TTC31|64427|tetratricopeptide repeat domain 31##AK303245|TTC31|64427|tetratricopeptide repeat domain 31##BC096709|TTC31|64427|tetratricopeptide repeat domain 31##BC098114|TTC31|64427|tetratricopeptide repeat domain 31##BC098365|TTC31|64427|tetratricopeptide repeat domain 31##BC099729|TTC31|64427|tetratricopeptide repeat domain 31##AK223355|TTC31|64427|tetratricopeptide repeat domain 31##AK301585|TTC31|64427|tetratricopeptide repeat domain 31##BC036017|TTC31|64427|tetratricopeptide repeat domain 31##BX648131|TTC31|64427|tetratricopeptide repeat domain 31##BC047084|TTC31|64427|tetratricopeptide repeat domain 31	1.99478	0.0	denovo_WM_7:-27:0.359	denovo_WM_7:-28:0.269	denovo_WM_7:-44:0.289	denovo_WM_7:-45:0.378
chr1	207100352	207100501	reg1008495.p2	5.233	+	BT006797 CU675387 DQ890699 HM480394 AF057557 NM_001193338 GQ160900 GQ160901 TSC_hg19_v1_chr1_-_207095293 AK292007 AK297053 AK301187 AK316336 BC006401 NM_001142473 NM_005449	-5139	-	NM_001185156 NM_001185157 NM_001185158 NM_006850 AY641440 AY641441 U16261 BC009681	-29626	+	AF224266 NM_018724 BC117386 BC117390 BC074948 BC074949 AB590628 AY876922 BC069311 BC069364 BC069398 BC069425 BC069449 BC069487 BC069523 BC069559 CU686884 HQ258739	-61251	+	BC110494 BC110495 CR749533 TSC_hg19_v1_chr1_-_207119812 AK309273 S62403 AF272149 X73079 AK225471 NM_002644	19335	-	AK298394 NM_001122979 NM_001170631 NM_032029	43530	-	BC000765 AK093826 AX748327 AY352640 NM_001083924 NM_023938	105622	-	BT006797|FAIM3|9214|Fas apoptotic inhibitory molecule 3##DQ890699|FAIM3|9214|Fas apoptotic inhibitory molecule 3##HM480394|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AF057557|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001193338|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160900|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160901|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK292007|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK297053|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK301187|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK316336|FAIM3|9214|Fas apoptotic inhibitory molecule 3##BC006401|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001142473|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_005449|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001185156|IL24|11009|interleukin 24##NM_001185157|IL24|11009|interleukin 24##NM_001185158|IL24|11009|interleukin 24##NM_006850|IL24|11009|interleukin 24##AY641440|IL24|11009|interleukin 24##AY641441|IL24|11009|interleukin 24##U16261|IL24|11009|interleukin 24##BC009681|IL24|11009|interleukin 24##AF224266|IL20|50604|interleukin 20##NM_018724|IL20|50604|interleukin 20##BC117386|IL20|50604|interleukin 20##BC117390|IL20|50604|interleukin 20##BC074948|IL20|50604|interleukin 20##BC074949|IL20|50604|interleukin 20##AY876922|IL20|50604|interleukin 20##BC069311|IL20|50604|interleukin 20##BC069364|IL20|50604|interleukin 20##BC069398|IL20|50604|interleukin 20##BC069425|IL20|50604|interleukin 20##BC069449|IL20|50604|interleukin 20##BC069487|IL20|50604|interleukin 20##BC069523|IL20|50604|interleukin 20##BC069559|IL20|50604|interleukin 20##HQ258739|IL20|50604|interleukin 20##BC110494|PIGR|5284|polymeric immunoglobulin receptor##BC110495|PIGR|5284|polymeric immunoglobulin receptor##CR749533|PIGR|5284|polymeric immunoglobulin receptor##S62403|PIGR|5284|polymeric immunoglobulin receptor##AF272149|PIGR|5284|polymeric immunoglobulin receptor##X73079|PIGR|5284|polymeric immunoglobulin receptor##AK225471|PIGR|5284|polymeric immunoglobulin receptor##NM_002644|PIGR|5284|polymeric immunoglobulin receptor##AK298394|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001122979|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001170631|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_032029|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##BC000765|C1orf116|79098|chromosome 1 open reading frame 116##AK093826|C1orf116|79098|chromosome 1 open reading frame 116##AY352640|C1orf116|79098|chromosome 1 open reading frame 116##NM_001083924|C1orf116|79098|chromosome 1 open reading frame 116##NM_023938|C1orf116|79098|chromosome 1 open reading frame 116	1.995278	0.0	
chr16	21566225	21566376	reg1009586.p1	5.233	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-34548	-	BC036263 NM_130464	-129643	-	BX648477 NM_001014444 NM_001888	-251913	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	44590	+	AF151839 TSC_hg19_v1_chr16_+_21611174	44854	+	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	97620	-	BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6	0.0	0.83772	CTCF.p2:29:0.838
chr11	68138385	68138522	reg1010583.p2	5.232	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-23017	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-58364	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-98995	-	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	89756	+	AK001920 TSC_hg19_v1_chr11_+_68367929	229423	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	313530	+	AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide	0.0	0.0	
chr19	17861539	17861665	reg1010991.p1	5.232	+	TSC_hg19_v1_chr19_+_17858564 NM_001161357 NM_001161358 AK291410 BC028021	-3051	+	DQ387861 NM_018174 AL834233 BC067115 TSC_hg19_v1_chr19_+_17830310 BC080547 AJ440784 AK027623 BC113952 AK308975	-31293	+	TSC_hg19_v1_chr19_+_17830288 AK292555	-31312	+	NM_001161359 NM_015122 TSC_hg19_v1_chr19_+_17862326 AK316458 BC041130	714	+	TSC_hg19_v1_chr19_+_17905918 NM_014256	44314	+	TSC_hg19_v1_chr19_+_17905971 AK075466 AK314323 AK075434 AB015630 AK225421 AB049585 AY358955 BC066876 BC067423 AK225478	44357	+	NM_001161357|FCHO1|23149|FCH domain only 1##NM_001161358|FCHO1|23149|FCH domain only 1##AK291410|FCHO1|23149|FCH domain only 1##BC028021|FCHO1|23149|FCH domain only 1##DQ387861|MAP1S|55201|microtubule-associated protein 1S##NM_018174|MAP1S|55201|microtubule-associated protein 1S##AL834233|MAP1S|55201|microtubule-associated protein 1S##BC067115|MAP1S|55201|microtubule-associated protein 1S##BC080547|MAP1S|55201|microtubule-associated protein 1S##AJ440784|MAP1S|55201|microtubule-associated protein 1S##AK027623|MAP1S|55201|microtubule-associated protein 1S##BC113952|MAP1S|55201|microtubule-associated protein 1S##AK308975|MAP1S|55201|microtubule-associated protein 1S##AK292555|MAP1S|55201|microtubule-associated protein 1S##NM_001161359|FCHO1|23149|FCH domain only 1##NM_015122|FCHO1|23149|FCH domain only 1##AK316458|FCHO1|23149|FCH domain only 1##BC041130|FCHO1|23149|FCH domain only 1##NM_014256|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK075466|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK314323|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK075434|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AB015630|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK225421|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AB049585|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AY358955|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC066876|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC067423|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK225478|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	0.996715	0.0	denovo_WM_7:42:0.438	denovo_WM_7:43:0.438
chr2	221627443	221627553	reg1009238.p1	5.232	+	AY142112 NM_005070 NM_201574 AK314083 AK309025 AK289974 AK226122 BC146656	-1135144	+	TSC_hg19_v1_chr2_+_220462589 AK295609 AK300611 AK296632 AK299894 BC034051 NM_052902 AF450267	-1164909	+	M13981 NM_002191 BC039076 BC006391 TSC_hg19_v1_chr2_+_220437031 BT006954 CU675381 DQ890602 DQ893773 M13144	-1190452	+	BC036860 BC026327 L36645 BC105000 BC105002 NM_004438 AK300772 TSC_hg19_v1_chr2_-_222437025 AK225181 AK312380	809512	-	L07483 U02309 TSC_hg19_v1_chr2_-_223159109	1531522	-	AK057009 NM_153038 BC109388	1535414	+	AY142112|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_005070|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_201574|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK314083|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK309025|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK289974|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK226122|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##BC146656|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK295609|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK300611|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK296632|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK299894|STK11IP|114790|serine/threonine kinase 11 interacting protein##BC034051|STK11IP|114790|serine/threonine kinase 11 interacting protein##NM_052902|STK11IP|114790|serine/threonine kinase 11 interacting protein##AF450267|STK11IP|114790|serine/threonine kinase 11 interacting protein##M13981|INHA|3623|inhibin, alpha##NM_002191|INHA|3623|inhibin, alpha##BC039076|INHA|3623|inhibin, alpha##BC006391|INHA|3623|inhibin, alpha##BT006954|INHA|3623|inhibin, alpha##DQ890602|INHA|3623|inhibin, alpha##DQ893773|INHA|3623|inhibin, alpha##M13144|INHA|3623|inhibin, alpha##BC026327|EPHA4|2043|EPH receptor A4##L36645|EPHA4|2043|EPH receptor A4##BC105000|EPHA4|2043|EPH receptor A4##BC105002|EPHA4|2043|EPH receptor A4##NM_004438|EPHA4|2043|EPH receptor A4##AK300772|EPHA4|2043|EPH receptor A4##AK225181|EPHA4|2043|EPH receptor A4##AK312380|EPHA4|2043|EPH receptor A4##L07483|PAX3|5077|paired box 3##U02309|PAX3|5077|paired box 3##AK057009|CCDC140|151278|coiled-coil domain containing 140##NM_153038|CCDC140|151278|coiled-coil domain containing 140##BC109388|CCDC140|151278|coiled-coil domain containing 140	0.183043	0.0	
chr3	46340879	46341033	reg1009609.p1	5.232	+	NM_001164680 NM_001837 NM_178328 NM_178329 AF262300 AF262299 AF224495 AF262301 AF262302 AF262303 AF262304 BC130318 BC130320 BC110297	-57040	+	BC064991 TSC_hg19_v1_chr3_-_46249804 L10918 BC051306 NM_001295	-91147	-	AB189434 AB189435 NM_001024644 NM_005283	-271978	-	AK292685 NM_001123041 NM_001123396	54273	+	TSC_hg19_v1_chr3_+_46395601 AK292920 U03905	54651	+	NM_000579 NM_001100168	70676	+	NM_001164680|CCR3|1232|chemokine (C-C motif) receptor 3##NM_001837|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178328|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178329|CCR3|1232|chemokine (C-C motif) receptor 3##AF262300|CCR3|1232|chemokine (C-C motif) receptor 3##AF262299|CCR3|1232|chemokine (C-C motif) receptor 3##AF224495|CCR3|1232|chemokine (C-C motif) receptor 3##AF262301|CCR3|1232|chemokine (C-C motif) receptor 3##AF262302|CCR3|1232|chemokine (C-C motif) receptor 3##AF262303|CCR3|1232|chemokine (C-C motif) receptor 3##AF262304|CCR3|1232|chemokine (C-C motif) receptor 3##BC130318|CCR3|1232|chemokine (C-C motif) receptor 3##BC130320|CCR3|1232|chemokine (C-C motif) receptor 3##BC110297|CCR3|1232|chemokine (C-C motif) receptor 3##BC064991|CCR1|1230|chemokine (C-C motif) receptor 1##L10918|CCR1|1230|chemokine (C-C motif) receptor 1##BC051306|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001295|CCR1|1230|chemokine (C-C motif) receptor 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1##AK292685|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123041|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123396|CCR2|729230|chemokine (C-C motif) receptor 2##AK292920|CCR2|729230|chemokine (C-C motif) receptor 2##U03905|CCR2|729230|chemokine (C-C motif) receptor 2##NM_000579|CCR5|1234|chemokine (C-C motif) receptor 5##NM_001100168|CCR5|1234|chemokine (C-C motif) receptor 5	0.994161	0.0	denovo_WM_7:-20:0.459	denovo_WM_7:-21:0.459
chr11	57559724	57559904	reg1008153.p1	5.231	+	NM_001085458 NM_001085459 NM_001085460 NM_001085461 NM_001085462 NM_001085463 NM_001085464 NM_001085465 NM_001085466 NM_001085467 NM_001085468 NM_001085469 NM_001206883 NM_001206884 NM_001206885 NM_001206886 NM_001206887 NM_001206888 NM_001206889 NM_001206890 NM_001206891 NM_001331 TSC_hg19_v1_chr11_+_57529331 AF062317 AF062318 AF062319 AF062320 AF062321 AF062322 AF062323 AF062324 AF062325 AF062326 AF062327 AF062328 AF062329 AF062330 AF062331 AF062332 AF062333 AF062334 AF062335 AF062336 AF062337 AF062338 AF062339 AF062340 AF062341 AF062342 AF062343 AF062344 BC075795	-30475	+	NM_001145101	-40562	-	TSC_hg19_v1_chr11_+_57508992 BC021122	-50814	+	BC110819 NM_001005212	231538	+	BC151146 BC151147 NM_001005186	238598	+	NM_001005211	327101	-	NM_001085458|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085459|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085460|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085461|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085462|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085463|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085464|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085465|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085466|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085467|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085468|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085469|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206883|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206884|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206885|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206886|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206887|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206888|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206889|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206890|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206891|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062317|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062318|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062319|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062320|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062321|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062322|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062323|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062324|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062325|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062326|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062327|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062328|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062329|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062330|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062332|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062333|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062334|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062335|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062336|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062337|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062338|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062339|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062340|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062341|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062342|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062343|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062344|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC075795|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001145101|BTBD18|643376|BTB (POZ) domain containing 18##BC021122|C11orf31|280636|chromosome 11 open reading frame 31##BC110819|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##NM_001005212|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##BC151146|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##BC151147|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005186|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005211|OR9I1|219954|olfactory receptor, family 9, subfamily I, member 1	0.0	0.0	
chr12	27094344	27094466	reg1005257.p2	5.231	+	NM_001171887 NM_001171888 NM_015633 AK001534 TSC_hg19_v1_chr12_+_27091402 BC032143 AF161472	-3030	+	TSC_hg19_v1_chr12_-_27091213 NM_018164	-3175	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	-3496	-	TSC_hg19_v1_chr12_-_27167274 AK002031 AB032470 BC005176	72753	-	TSC_hg19_v1_chr12_-_27167318 AK023085	72916	-	TSC_hg19_v1_chr12_-_27167332 NM_016551	72930	-	NM_001171887|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_001171888|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_015633|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK001534|FGFR1OP2|26127|FGFR1 oncogene partner 2##BC032143|FGFR1OP2|26127|FGFR1 oncogene partner 2##AF161472|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK002031|TM7SF3|51768|transmembrane 7 superfamily member 3##AB032470|TM7SF3|51768|transmembrane 7 superfamily member 3##BC005176|TM7SF3|51768|transmembrane 7 superfamily member 3##AK023085|TM7SF3|51768|transmembrane 7 superfamily member 3##NM_016551|TM7SF3|51768|transmembrane 7 superfamily member 3	0.0	0.0	
chr4	128809371	128809504	reg1008112.p2	5.231	+	TSC_hg19_v1_chr4_+_128802067 AK303399 AB006972 Y13115 DQ894189 CU690262 AK302858 NM_001190801	-7206	+	NM_001190799 NM_014264 AK314238 BC036023 TSC_hg19_v1_chr4_+_128802063	-7398	+	TSC_hg19_v1_chr4_+_128703491 AY290862 AB023421 EF197155	-105845	+	TSC_hg19_v1_chr4_-_128886304 CU688672 AK294439 AK315596 AK074564	76878	-	TSC_hg19_v1_chr4_+_128886524 BC111400 NM_001039717 BC058898 BC034253	77019	+	TSC_hg19_v1_chr4_+_128886618 AK024759 BC058847 BC075793 BC128142 BC128143	77202	+	AK303399|PLK4|10733|polo-like kinase 4##AB006972|PLK4|10733|polo-like kinase 4##Y13115|PLK4|10733|polo-like kinase 4##DQ894189|PLK4|10733|polo-like kinase 4##AK302858|PLK4|10733|polo-like kinase 4##NM_001190801|PLK4|10733|polo-like kinase 4##NM_001190799|PLK4|10733|polo-like kinase 4##NM_014264|PLK4|10733|polo-like kinase 4##AK314238|PLK4|10733|polo-like kinase 4##BC036023|PLK4|10733|polo-like kinase 4##AY290862|HSPA4L|22824|heat shock 70kDa protein 4-like##AB023421|HSPA4L|22824|heat shock 70kDa protein 4-like##EF197155|HSPA4L|22824|heat shock 70kDa protein 4-like##AK294439|MFSD8|256471|major facilitator superfamily domain containing 8##AK315596|MFSD8|256471|major facilitator superfamily domain containing 8##AK074564|MFSD8|256471|major facilitator superfamily domain containing 8##BC111400|C4orf29|80167|chromosome 4 open reading frame 29##NM_001039717|C4orf29|80167|chromosome 4 open reading frame 29##BC058898|C4orf29|80167|chromosome 4 open reading frame 29##BC034253|C4orf29|80167|chromosome 4 open reading frame 29##AK024759|C4orf29|80167|chromosome 4 open reading frame 29##BC058847|C4orf29|80167|chromosome 4 open reading frame 29##BC075793|C4orf29|80167|chromosome 4 open reading frame 29##BC128142|C4orf29|80167|chromosome 4 open reading frame 29##BC128143|C4orf29|80167|chromosome 4 open reading frame 29	1.990377	0.0	denovo_WM_7:-77:0.269	denovo_WM_7:-78:0.224	denovo_WM_7:-96:0.232	denovo_WM_7:-97:0.277
chr10	74964591	74964727	reg1008761.p2	5.230	+	TSC_hg19_v1_chr10_+_74927876 NM_173348	-36765	+	BC000721 D88208 TSC_hg19_v1_chr10_-_74927827 AK315711 AK225519 NM_001135752 NM_001135753 NM_007265	-36823	-	TSC_hg19_v1_chr10_-_74927767 AK022616	-36875	-	TSC_hg19_v1_chr10_-_75007006 AF327347 BC136507 AK074420 NM_015190	42372	-	AB529029 TSC_hg19_v1_chr10_-_75012387 AB049948 BC021106 AK025715 AK098291 AK303204 AF151890 NM_016065	47688	-	AK308746 AL833537 BC032856 NM_145170	153900	-	NM_173348|FAM149B1|317662|family with sequence similarity 149, member B1##BC000721|ECD|11319|ecdysoneless homolog (Drosophila)##D88208|ECD|11319|ecdysoneless homolog (Drosophila)##AK315711|ECD|11319|ecdysoneless homolog (Drosophila)##AK225519|ECD|11319|ecdysoneless homolog (Drosophila)##NM_001135752|ECD|11319|ecdysoneless homolog (Drosophila)##NM_001135753|ECD|11319|ecdysoneless homolog (Drosophila)##NM_007265|ECD|11319|ecdysoneless homolog (Drosophila)##AK022616|ECD|11319|ecdysoneless homolog (Drosophila)##AF327347|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##BC136507|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##AK074420|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##NM_015190|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##AB049948|MRPS16|51021|mitochondrial ribosomal protein S16##BC021106|MRPS16|51021|mitochondrial ribosomal protein S16##AK025715|MRPS16|51021|mitochondrial ribosomal protein S16##AK098291|MRPS16|51021|mitochondrial ribosomal protein S16##AF151890|MRPS16|51021|mitochondrial ribosomal protein S16##NM_016065|MRPS16|51021|mitochondrial ribosomal protein S16##AK308746|TTC18|118491|tetratricopeptide repeat domain 18##AL833537|TTC18|118491|tetratricopeptide repeat domain 18##BC032856|TTC18|118491|tetratricopeptide repeat domain 18##NM_145170|TTC18|118491|tetratricopeptide repeat domain 18	2.980719	0.0	denovo_WM_7:51:0.292	denovo_WM_7:52:0.228	denovo_WM_7:87:0.219	denovo_WM_7:88:0.282
chr1	236443095	236443166	reg1008591.p2	5.230	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-137254	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-214390	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-214632	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	2058	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	2186	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	114553	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.994747	0.0	denovo_WM_7:21:0.309	denovo_WM_7:22:0.309	denovo_WM_7:23:0.309
chr6	11493594	11493707	reg1007267.p1	5.230	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-111110	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-260740	-	L43821 TSC_hg19_v1_chr6_-_11232900	-260750	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	44848	+	NM_001143948 NM_032744	285629	-	NM_002114	519073	+	BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##L43821|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1	0.994	0.0	
chr1	56950546	56950671	reg1009491.p1	5.229	+	TSC_hg19_v1_chr1_+_55681088 BC040313	-1269524	+	TSC_hg19_v1_chr1_-_55681045 NM_015306	-1269572	-	TSC_hg19_v1_chr1_+_55505220 AK075365	-1445384	+	AF043329 TSC_hg19_v1_chr1_-_57045054 BC009196	94411	-	AF017786 U79294 AF480883 TSC_hg19_v1_chr1_-_57045132	94522	-	AK312439 TSC_hg19_v1_chr1_-_57045216	94609	-	BC040313|LOC100507634|100507634|uncharacterized LOC100507634##NM_015306|USP24|23358|ubiquitin specific peptidase 24##AK075365|PCSK9|255738|proprotein convertase subtilisin/kexin type 9##AF043329|PPAP2B|8613|phosphatidic acid phosphatase type 2B##BC009196|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF017786|PPAP2B|8613|phosphatidic acid phosphatase type 2B##U79294|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF480883|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK312439|PPAP2B|8613|phosphatidic acid phosphatase type 2B	0.99007	0.0	denovo_WM_7:-28:0.313	denovo_WM_7:-29:0.313	denovo_WM_7:-30:0.313
chr2	68582094	68582224	reg1007709.p1	5.229	+	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	-35059	-	TSC_hg19_v1_chr2_-_68479665 AK307136 AK314893 BC027913 NM_000945	-102564	-	TSC_hg19_v1_chr2_+_68384999 BC008304 NM_020143 AK291715 AF349314 AF164799 AK313204 AK223118 L48692 AK225641 BC018152	-197062	+	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	10213	+	TSC_hg19_v1_chr2_+_68592449 DQ893586 DQ894896 CU676266 AB528939 CR542056 CR542079	10298	+	BC089423 DQ904332 NM_001024680 TSC_hg19_v1_chr2_-_68694427	112251	-	NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##AK307136|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##AK314893|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC027913|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_000945|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC008304|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##NM_020143|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK291715|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF349314|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF164799|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK313204|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK223118|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK225641|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##BC018152|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin##DQ893586|PLEK|5341|pleckstrin##DQ894896|PLEK|5341|pleckstrin##CR542056|PLEK|5341|pleckstrin##CR542079|PLEK|5341|pleckstrin##BC089423|FBXO48|554251|F-box protein 48##DQ904332|FBXO48|554251|F-box protein 48##NM_001024680|FBXO48|554251|F-box protein 48	1.986046	0.0	denovo_WM_7:-83:0.539	denovo_WM_7:-84:0.270	denovo_WM_7:-98:0.329	denovo_WM_7:-99:0.599
chr5	58012603	58012743	reg1010869.p2	5.229	+	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-133754	+	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	-225379	+	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	-256737	-	BC036319 NM_001197223	283085	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	322705	-	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	559257	-	AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.984356	0.0	denovo_WM_7:-34:0.311	denovo_WM_7:-35:0.311	denovo_WM_7:-36:0.311
chrX	5939516	5939655	reg1009737.p1	5.229	+	TSC_hg19_v1_chrX_-_3631668 NM_005044	-2307867	-	TSC_hg19_v1_chrX_-_3631645 X85545	-2307940	-	TSC_hg19_v1_chrX_-_3631619 BC041073	-2308043	-	AB033086 AF376803 AX773938 NM_020742	206302	-	AK055471 BC034018 NM_181332	207095	-	AF167078 AF167079 NM_016379	513573	-	NM_005044|PRKX|5613|protein kinase, X-linked##X85545|PRKX|5613|protein kinase, X-linked##BC041073|PRKX|5613|protein kinase, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A	0.0	0.460772	CTCF.p2:-20:0.461
chr1	147457766	147457930	reg1010588.p1	5.228	+	NM_001097616	-32282	+	TSC_hg19_v1_chr1_+_147400563 BC146880 AK316371 BC003187 AB528816 DQ890650 DQ893830 BT006679	-57247	+	TSC_hg19_v1_chr1_+_147400532 AK021758 NM_016334 AL133020 AY358966 AB097024 AB097025 AK223223 AK299995 AK302266 BC067816 AF132947 U78723	-57326	+	AF419617 NM_001101663	152232	-	BX648497 TSC_hg19_v1_chr1_-_147624379	166497	-	TSC_hg19_v1_chr1_-_147624593 BC136292 NM_183372	166668	-	NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BT006679|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##NM_016334|GPR89B|51463|G protein-coupled receptor 89B##AL133020|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##BX648497|NBPF11|200030|neuroblastoma breakpoint family, member 11##BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11	1.118482	0.0	denovo_WM_7:25:0.987
chr2	218911119	218911230	reg1006219.p1	5.228	+	TSC_hg19_v1_chr2_-_218867719 AK309785	-43451	-	AK001785 TSC_hg19_v1_chr2_-_218843551	-67628	-	TSC_hg19_v1_chr2_-_218808794 BC140942 AK300345 NM_022648	-102393	-	NM_198483	22563	+	U11872 NM_001168298	78830	+	NM_001557 U11874 L19593 U11875 BC037961 AK290906 AK312664	79615	+	AK309785|TNS1|7145|tensin 1##AK001785|TNS1|7145|tensin 1##BC140942|TNS1|7145|tensin 1##AK300345|TNS1|7145|tensin 1##NM_022648|TNS1|7145|tensin 1##NM_198483|RUFY4|285180|RUN and FYVE domain containing 4##U11872|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001168298|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001557|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11874|CXCR2|3579|chemokine (C-X-C motif) receptor 2##L19593|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11875|CXCR2|3579|chemokine (C-X-C motif) receptor 2##BC037961|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK290906|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK312664|CXCR2|3579|chemokine (C-X-C motif) receptor 2	0.0	0.0	
chr4	1178188	1178304	reg1011319.p1	5.228	+	TSC_hg19_v1_chr4_-_1166969 NM_001128325	-11268	-	TSC_hg19_v1_chr4_-_1166567 AK074770 BC036341 AB027466 AY358948 NM_012445	-11645	-	TSC_hg19_v1_chr4_-_1166480 AK074618	-11759	-	BC104228 BC104229 BC112991 BC112992 BC044945 AK091779 AX747178 TSC_hg19_v1_chr4_-_1195337	16996	-	CR627052 NM_001199021	24503	-	AB527760 DQ891918 DQ895102 TSC_hg19_v1_chr4_-_1242878 AF091555 BC011655 U37408	64564	-	NM_001128325|SPON2|10417|spondin 2, extracellular matrix protein##AK074770|SPON2|10417|spondin 2, extracellular matrix protein##BC036341|SPON2|10417|spondin 2, extracellular matrix protein##AB027466|SPON2|10417|spondin 2, extracellular matrix protein##AY358948|SPON2|10417|spondin 2, extracellular matrix protein##NM_012445|SPON2|10417|spondin 2, extracellular matrix protein##AK074618|SPON2|10417|spondin 2, extracellular matrix protein##BC104228|LOC100130872|100130872|uncharacterized LOC100130872##BC104229|LOC100130872|100130872|uncharacterized LOC100130872##BC112991|LOC100130872|100130872|uncharacterized LOC100130872##BC112992|LOC100130872|100130872|uncharacterized LOC100130872##BC044945|LOC100130872|100130872|uncharacterized LOC100130872##AK091779|LOC100130872|100130872|uncharacterized LOC100130872##CR627052|LOC100130872|100130872|uncharacterized LOC100130872##NM_001199021|SPON2|10417|spondin 2, extracellular matrix protein##DQ891918|CTBP1|1487|C-terminal binding protein 1##DQ895102|CTBP1|1487|C-terminal binding protein 1##AF091555|CTBP1|1487|C-terminal binding protein 1##BC011655|CTBP1|1487|C-terminal binding protein 1##U37408|CTBP1|1487|C-terminal binding protein 1	0.0	0.0	
chr15	52198172	52198271	reg1009635.p2	5.227	+	TSC_hg19_v1_chr15_+_52121876 BX647277 AF177171 BC020542	-76202	+	TSC_hg19_v1_chr15_+_52121827 NM_014547 AK312569	-76394	+	TSC_hg19_v1_chr15_+_52043793 NM_001142885 NM_014548 BC036184 BC064961 BC052749 AF177169 AK293823 AK292733	-154398	+	TSC_hg19_v1_chr15_+_52201590 AK025704	3389	+	TSC_hg19_v1_chr15_-_52263976 BC018147 NM_138792 AK055762 AK297972 AY302186	65741	-	TSC_hg19_v1_chr15_+_52311425 NM_002748	113198	+	BX647277|TMOD3|29766|tropomodulin 3 (ubiquitous)##AF177171|TMOD3|29766|tropomodulin 3 (ubiquitous)##BC020542|TMOD3|29766|tropomodulin 3 (ubiquitous)##NM_014547|TMOD3|29766|tropomodulin 3 (ubiquitous)##AK312569|TMOD3|29766|tropomodulin 3 (ubiquitous)##NM_001142885|TMOD2|29767|tropomodulin 2 (neuronal)##NM_014548|TMOD2|29767|tropomodulin 2 (neuronal)##BC036184|TMOD2|29767|tropomodulin 2 (neuronal)##BC064961|TMOD2|29767|tropomodulin 2 (neuronal)##AF177169|TMOD2|29767|tropomodulin 2 (neuronal)##AK293823|TMOD2|29767|tropomodulin 2 (neuronal)##AK292733|TMOD2|29767|tropomodulin 2 (neuronal)##AK025704|TMOD3|29766|tropomodulin 3 (ubiquitous)##BC018147|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_138792|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK055762|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK297972|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AY302186|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6	1.969639	0.518491	CTCF.p2:13:0.518	denovo_WM_7:-49:0.246	denovo_WM_7:-50:0.663	denovo_WM_7:-65:0.812
chr18	72935950	72936130	reg1008114.p1	5.227	+	TSC_hg19_v1_chr18_+_72922751 NM_005786 AK091155 AX746813	-13295	+	BC018081 NM_175907 TSC_hg19_v1_chr18_-_72921324	-14735	-	TSC_hg19_v1_chr18_-_72921059 AK292880 BC078661 BC033780	-14928	-	TSC_hg19_v1_chr18_+_72998258 AK223545 BC024152	62302	+	BC105945 BC107486 NM_001037331 BC037871 AK093452 AX748136	203582	-	BC108287 TSC_hg19_v1_chr18_-_74092260	1156210	-	NM_005786|TSHZ1|10194|teashirt zinc finger homeobox 1##BC018081|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##NM_175907|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##AK292880|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC078661|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC033780|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##AK223545|TSHZ1|10194|teashirt zinc finger homeobox 1##BC024152|TSHZ1|10194|teashirt zinc finger homeobox 1##BC105945|C18orf62|284274|chromosome 18 open reading frame 62##BC107486|C18orf62|284274|chromosome 18 open reading frame 62##NM_001037331|C18orf62|284274|chromosome 18 open reading frame 62##BC037871|C18orf62|284274|chromosome 18 open reading frame 62##AK093452|C18orf62|284274|chromosome 18 open reading frame 62##BC108287|ZNF516|9658|zinc finger protein 516	1.992775	0.0	denovo_WM_7:11:0.964
chr19	7192360	7192477	reg1009683.p2	5.227	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-92867	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-122703	+	AK315405 NM_001044387 NM_001044388 NM_024341	-122956	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	101542	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	267589	+	TSC_hg19_v1_chr19_+_7460061 AB011093	267659	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.936752	0.0	denovo_WM_7:-100:0.826
chr21	38929498	38929626	reg1005780.p1	5.227	+	NM_130438 NM_001396 U52373 D85759 U58496	-136942	+	D86550 NM_130436	-138356	+	AF108830 NM_101395 AB015283 AB015284	-189692	+	D87327 NM_002240 TSC_hg19_v1_chr21_-_39288761	359149	-	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	563839	-	BC013327 NM_002243	699101	+	NM_130438|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_001396|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U52373|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D85759|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U58496|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D86550|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_130436|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AF108830|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_101395|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015283|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015284|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D87327|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_002240|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	0.740372	0.0	denovo_WM_7:-97:0.431
chr2	87795644	87795791	reg1008474.p1	5.227	+	TSC_hg19_v1_chr2_+_87755060 AK312010	-40657	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	-40700	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-492385	-	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	251902	+	AK302429 NM_001078170	329568	-	CR749330 NM_001024457	489591	-	AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1##AK302429|RGPD2|729857|RANBP2-like and GRIP domain containing 2##NM_001078170|RGPD2|729857|RANBP2-like and GRIP domain containing 2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1	0.352014	0.077248	
chr12	117550153	117550290	reg1010502.p2	5.226	+	DQ894644 TSC_hg19_v1_chr12_-_117537222 AF443207 BC015221 NM_001168325 NM_017899 AK000614	-12958	-	TSC_hg19_v1_chr12_+_117348781 BC037296 NM_012174 NM_153348 AK289621 AF176707 BC075823	-201435	+	NM_003806 U76376	-230990	-	AL136899 TSC_hg19_v1_chr12_-_117628277 BC091496 AF174601 AB020682 AK001699 AK314573 BC034045 BC042333 AK308141 NM_015002 NM_033624	78004	-	NM_001204213	192635	-	NM_001204214	196993	-	DQ894644|TESC|54997|tescalcin##AF443207|TESC|54997|tescalcin##BC015221|TESC|54997|tescalcin##NM_001168325|TESC|54997|tescalcin##NM_017899|TESC|54997|tescalcin##AK000614|TESC|54997|tescalcin##BC037296|FBXW8|26259|F-box and WD repeat domain containing 8##NM_012174|FBXW8|26259|F-box and WD repeat domain containing 8##NM_153348|FBXW8|26259|F-box and WD repeat domain containing 8##AK289621|FBXW8|26259|F-box and WD repeat domain containing 8##AF176707|FBXW8|26259|F-box and WD repeat domain containing 8##NM_003806|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##U76376|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##AL136899|FBXO21|23014|F-box protein 21##BC091496|FBXO21|23014|F-box protein 21##AF174601|FBXO21|23014|F-box protein 21##AB020682|FBXO21|23014|F-box protein 21##AK001699|FBXO21|23014|F-box protein 21##AK314573|FBXO21|23014|F-box protein 21##BC034045|FBXO21|23014|F-box protein 21##BC042333|FBXO21|23014|F-box protein 21##AK308141|FBXO21|23014|F-box protein 21##NM_015002|FBXO21|23014|F-box protein 21##NM_033624|FBXO21|23014|F-box protein 21##NM_001204213|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204214|NOS1|4842|nitric oxide synthase 1 (neuronal)	0.995621	0.0	denovo_WM_7:6:0.455	denovo_WM_7:7:0.455
chr4	123243169	123243319	reg1006148.p2	5.225	+	CR936613 TSC_hg19_v1_chr4_+_123161129	-82120	+	DQ335469 NM_015312	-151487	+	AY865574 NM_001130698	-370336	-	NM_139243 AK057303	56899	+	NM_001159285 NM_001159295 BC040229 AK093297 AX748040	57388	+	AF532913 AY283686 AY523040 DQ231169 S77835 AB451325 AB451454 AB591003 CU688118 DQ861285 AF228636 BC066254 BC066255 BC066256 BC066257 BC070338 S77834 U25676 V00564 NM_000586 X01586	134342	-	CR936613|KIAA1109|84162|KIAA1109##DQ335469|KIAA1109|84162|KIAA1109##NM_015312|KIAA1109|84162|KIAA1109##AY865574|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_001130698|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_139243|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK057303|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##NM_001159285|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##NM_001159295|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##BC040229|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK093297|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AF532913|IL2|3558|interleukin 2##AY283686|IL2|3558|interleukin 2##AY523040|IL2|3558|interleukin 2##DQ231169|IL2|3558|interleukin 2##S77835|IL2|3558|interleukin 2##AB451325|IL2|3558|interleukin 2##AB451454|IL2|3558|interleukin 2##DQ861285|IL2|3558|interleukin 2##AF228636|IL2|3558|interleukin 2##BC066254|IL2|3558|interleukin 2##BC066255|IL2|3558|interleukin 2##BC066256|IL2|3558|interleukin 2##BC066257|IL2|3558|interleukin 2##BC070338|IL2|3558|interleukin 2##S77834|IL2|3558|interleukin 2##U25676|IL2|3558|interleukin 2##V00564|IL2|3558|interleukin 2##NM_000586|IL2|3558|interleukin 2##X01586|IL2|3558|interleukin 2	1.992114	0.0	denovo_WM_7:-80:0.249	denovo_WM_7:-81:0.214	denovo_WM_7:-100:0.213	denovo_WM_7:-101:0.248
chr7	137580100	137580256	reg1000891.p1	5.225	+	TSC_hg19_v1_chr7_+_137531690 BC047556	-48446	+	TSC_hg19_v1_chr7_-_137531587 NM_004717	-48582	-	BC005916 TSC_hg19_v1_chr7_-_137028543 NM_002825 M57399	-551623	-	TSC_hg19_v1_chr7_-_137620668 BC015585	40484	-	NM_001243523	57915	+	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	106616	-	NM_004717|DGKI|9162|diacylglycerol kinase, iota##BC005916|PTN|5764|pleiotrophin##NM_002825|PTN|5764|pleiotrophin##M57399|PTN|5764|pleiotrophin##BC015585|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_001243523|LOC100130880|100130880|uncharacterized LOC100130880##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2	0.0	0.0	
chr19	49463112	49463292	reg1009976.p2	5.224	+	TSC_hg19_v1_chr19_+_49458160 CU680816 AB528719 AF007826 AF247393 AF250190 L22473 L22474 L22475 U19599 AJ586909 AJ586910 AJ417988	-5024	+	TSC_hg19_v1_chr19_+_49458150 BC014175 AK291076	-5063	+	TSC_hg19_v1_chr19_+_49458118 NM_004324 NM_138761 NM_138763 NM_138764	-5126	+	TSC_hg19_v1_chr19_+_49468565 AK026534 AK130191 AK131048 AK131050 AK307065 AK311773 AY207005 BC008439 BC008441 BC013928 BC016346 BC016354 BC016715 BC021670 BC058820 BC062708 NM_000146 BX571748 BC067772 AK130205 AK131053 BC004245	5364	+	Y09188 BC018990 BC002991 TSC_hg19_v1_chr19_+_49468604 M11147	5401	+	TSC_hg19_v1_chr19_+_49468656 DQ892980 DQ896228 EU831925 EU832020 AB528331 CU678630 AY466472 CR456715	5508	+	AF007826|BAX|581|BCL2-associated X protein##AF247393|BAX|581|BCL2-associated X protein##AF250190|BAX|581|BCL2-associated X protein##L22473|BAX|581|BCL2-associated X protein##L22474|BAX|581|BCL2-associated X protein##L22475|BAX|581|BCL2-associated X protein##U19599|BAX|581|BCL2-associated X protein##AJ586909|BAX|581|BCL2-associated X protein##AJ586910|BAX|581|BCL2-associated X protein##AJ417988|BAX|581|BCL2-associated X protein##BC014175|BAX|581|BCL2-associated X protein##AK291076|BAX|581|BCL2-associated X protein##NM_004324|BAX|581|BCL2-associated X protein##NM_138761|BAX|581|BCL2-associated X protein##NM_138763|BAX|581|BCL2-associated X protein##NM_138764|BAX|581|BCL2-associated X protein##AK026534|FTL|2512|ferritin, light polypeptide##AK130191|FTL|2512|ferritin, light polypeptide##AK131048|FTL|2512|ferritin, light polypeptide##AK131050|FTL|2512|ferritin, light polypeptide##AK307065|FTL|2512|ferritin, light polypeptide##AK311773|FTL|2512|ferritin, light polypeptide##AY207005|FTL|2512|ferritin, light polypeptide##BC008439|FTL|2512|ferritin, light polypeptide##BC008441|FTL|2512|ferritin, light polypeptide##BC013928|FTL|2512|ferritin, light polypeptide##BC016346|FTL|2512|ferritin, light polypeptide##BC016354|FTL|2512|ferritin, light polypeptide##BC016715|FTL|2512|ferritin, light polypeptide##BC021670|FTL|2512|ferritin, light polypeptide##BC058820|FTL|2512|ferritin, light polypeptide##BC062708|FTL|2512|ferritin, light polypeptide##NM_000146|FTL|2512|ferritin, light polypeptide##BX571748|FTL|2512|ferritin, light polypeptide##BC067772|FTL|2512|ferritin, light polypeptide##AK130205|FTL|2512|ferritin, light polypeptide##AK131053|FTL|2512|ferritin, light polypeptide##BC004245|FTL|2512|ferritin, light polypeptide##Y09188|FTL|2512|ferritin, light polypeptide##BC018990|FTL|2512|ferritin, light polypeptide##BC002991|FTL|2512|ferritin, light polypeptide##M11147|FTL|2512|ferritin, light polypeptide##DQ892980|FTL|2512|ferritin, light polypeptide##DQ896228|FTL|2512|ferritin, light polypeptide##EU831925|FTL|2512|ferritin, light polypeptide##EU832020|FTL|2512|ferritin, light polypeptide##AY466472|FTL|2512|ferritin, light polypeptide##CR456715|FTL|2512|ferritin, light polypeptide	0.847278	0.0	denovo_WM_7:54:0.637
chr3	186258387	186258534	reg1008899.p2	5.224	+	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	-178526	-	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	-431604	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	-432114	-	CU686840 AF161703 BC069478 AK314172 NM_017541	3680	-	TSC_hg19_v1_chr3_-_186285118 AK001422 BC025748	26648	-	NM_018138 TSC_hg19_v1_chr3_-_186285140	26681	-	BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa##BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##AF161703|CRYGS|1427|crystallin, gamma S##BC069478|CRYGS|1427|crystallin, gamma S##AK314172|CRYGS|1427|crystallin, gamma S##NM_017541|CRYGS|1427|crystallin, gamma S##AK001422|TBCCD1|55171|TBCC domain containing 1##BC025748|TBCCD1|55171|TBCC domain containing 1##NM_018138|TBCCD1|55171|TBCC domain containing 1	0.989063	0.994842	CTCF.p2:21:0.995	denovo_WM_7:-76:0.979
chr7	23490226	23490368	reg1010315.p1	5.224	+	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	-151332	+	AF322909 TSC_hg19_v1_chr7_+_23286426 BC025297 BC011595 CU679974 CU689536 AB528457 DQ892084 DQ895277 BT007074	-203849	+	TSC_hg19_v1_chr7_+_23286407 AJ505015	-203892	+	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	19382	-	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	19701	-	TSC_hg19_v1_chr7_+_23530136 BC026177	39870	+	BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##AF322909|GPNMB|10457|glycoprotein (transmembrane) nmb##BC025297|GPNMB|10457|glycoprotein (transmembrane) nmb##BC011595|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ892084|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ895277|GPNMB|10457|glycoprotein (transmembrane) nmb##BT007074|GPNMB|10457|glycoprotein (transmembrane) nmb##AJ505015|GPNMB|10457|glycoprotein (transmembrane) nmb##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32	0.0	0.033757	
chr8	72739449	72739562	reg1000119.p1	5.224	+	BC035138 BC048982 TSC_hg19_v1_chr8_-_72459928	-279596	-	AJ000098 NM_000503 TSC_hg19_v1_chr8_-_72274481	-465030	-	TSC_hg19_v1_chr8_-_72274302 AK307379	-465212	-	TSC_hg19_v1_chr8_+_72756330 AK123315 BC094782	16769	+	TSC_hg19_v1_chr8_+_72756336 BX647470	16835	+	TSC_hg19_v1_chr8_-_72756449 AF087036 AB463900 BT007169	16934	-	AJ000098|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_000503|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK307379|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK123315|LOC100132891|100132891|uncharacterized LOC100132891##AF087036|MSC|9242|musculin##BT007169|MSC|9242|musculin	0.0	0.0	
chr12	22631033	22631213	reg1011238.p1	5.223	+	BC117285 BC126162 BC031081 BC046158 AK315340 EU041716 NM_003034 X77922 TSC_hg19_v1_chr12_-_22487789	-143443	-	AF271388 TSC_hg19_v1_chr12_+_22199226 AF397212	-431894	+	TSC_hg19_v1_chr12_+_22199207 BC016609 NM_018686 AL832975 AK022927 AK222981	-431951	+	AB385344 AB011100 BC042498 TSC_hg19_v1_chr12_-_22697128 AK299353	66016	-	BC117143 BC143859 BC143860 BC143878 TSC_hg19_v1_chr12_-_22697430 AK295862	66266	-	TSC_hg19_v1_chr12_-_22697446 AY166851 NM_014802 AK310753	66343	-	BC117285|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##BC126162|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##BC031081|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##BC046158|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##AK315340|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##EU041716|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##NM_003034|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##X77922|ST8SIA1|6489|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1##AF271388|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##AF397212|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##BC016609|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##NM_018686|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##AL832975|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##AK022927|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##AK222981|CMAS|55907|cytidine monophosphate N-acetylneuraminic acid synthetase##AB011100|KIAA0528|9847|KIAA0528##BC042498|KIAA0528|9847|KIAA0528##AK299353|KIAA0528|9847|KIAA0528##BC117143|KIAA0528|9847|KIAA0528##BC143859|KIAA0528|9847|KIAA0528##BC143860|KIAA0528|9847|KIAA0528##BC143878|KIAA0528|9847|KIAA0528##AK295862|KIAA0528|9847|KIAA0528##AY166851|KIAA0528|9847|KIAA0528##NM_014802|KIAA0528|9847|KIAA0528##AK310753|KIAA0528|9847|KIAA0528	0.0	0.0	
chr1	224780741	224780883	reg1007672.p1	5.223	+	AB209887 NM_001115113 NM_025160	-158812	-	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	-159052	-	BC000573 TSC_hg19_v1_chr1_+_224544609 AK222634 BX649076 AM392966 AM393151 AM393502 DQ891901 DQ895087	-236201	+	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	23367	+	TSC_hg19_v1_chr1_+_225117383 NM_001145154 NM_001373 NM_144989 BC119716 BC119717 BC042869	336553	+	AK222834 TSC_hg19_v1_chr1_-_225615757 L25931 AB209514 BC020079 AK303589 AK312258	834917	-	AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##BC000573|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK222634|CNIH4|29097|cornichon homolog 4 (Drosophila)##BX649076|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM392966|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393151|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393502|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ891901|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ895087|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_001145154|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_001373|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_144989|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119716|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119717|DNAH14|127602|dynein, axonemal, heavy chain 14##BC042869|DNAH14|127602|dynein, axonemal, heavy chain 14##AK222834|LBR|3930|lamin B receptor##L25931|LBR|3930|lamin B receptor##AB209514|LBR|3930|lamin B receptor##BC020079|LBR|3930|lamin B receptor##AK303589|LBR|3930|lamin B receptor##AK312258|LBR|3930|lamin B receptor	1.983516	0.0	denovo_WM_7:39:0.502	denovo_WM_7:40:0.431	denovo_WM_7:56:0.981
chr5	153939080	153939220	reg1008662.p1	5.223	+	TSC_hg19_v1_chr5_-_153857823 AF061756 NM_004821	-81328	-	TSC_hg19_v1_chr5_-_153857790 BC021190	-81362	-	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	-113540	+	BC001460 NM_015315 CU674716	153323	+	TSC_hg19_v1_chr5_+_154134891 AB018274	195745	+	TSC_hg19_v1_chr5_+_154135038 AK091465 AX747001	195931	+	AF061756|HAND1|9421|heart and neural crest derivatives expressed 1##NM_004821|HAND1|9421|heart and neural crest derivatives expressed 1##BC021190|HAND1|9421|heart and neural crest derivatives expressed 1##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like##BC001460|LARP1|23367|La ribonucleoprotein domain family, member 1##NM_015315|LARP1|23367|La ribonucleoprotein domain family, member 1##AB018274|LARP1|23367|La ribonucleoprotein domain family, member 1##AK091465|LARP1|23367|La ribonucleoprotein domain family, member 1	0.719684	0.0	denovo_WM_7:-8:0.239
chr11	119130828	119130989	reg1009973.p2	5.222	+	TSC_hg19_v1_chr11_+_119077024 BC132733 BC136463	-53868	+	TSC_hg19_v1_chr11_+_119076992 X57110 NM_005188	-53925	+	TSC_hg19_v1_chr11_-_119076895 BC043548	-54010	-	AB527309 EU832794 GQ129330 TSC_hg19_v1_chr11_-_119187841 BC006329 M28882 M29277 AF089868 BC056418 AK128335 AK291571 AK312430 NM_006500 AB209925	56933	-	TSC_hg19_v1_chr11_+_119205234 BX648447 AK122642 BX647424 NM_032015	74323	+	AL110261 AB590791 TSC_hg19_v1_chr11_-_119211170	80194	-	BC132733|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##BC136463|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##X57110|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##NM_005188|CBL|867|Cas-Br-M (murine) ecotropic retroviral transforming sequence##BC043548|CCDC153|283152|coiled-coil domain containing 153##EU832794|MCAM|4162|melanoma cell adhesion molecule##GQ129330|MCAM|4162|melanoma cell adhesion molecule##M28882|MCAM|4162|melanoma cell adhesion molecule##M29277|MCAM|4162|melanoma cell adhesion molecule##AF089868|MCAM|4162|melanoma cell adhesion molecule##BC056418|MCAM|4162|melanoma cell adhesion molecule##AK128335|MCAM|4162|melanoma cell adhesion molecule##AK291571|MCAM|4162|melanoma cell adhesion molecule##AK312430|MCAM|4162|melanoma cell adhesion molecule##NM_006500|MCAM|4162|melanoma cell adhesion molecule##AB209925|MCAM|4162|melanoma cell adhesion molecule##BX648447|RNF26|79102|ring finger protein 26##AK122642|RNF26|79102|ring finger protein 26##BX647424|RNF26|79102|ring finger protein 26##NM_032015|RNF26|79102|ring finger protein 26##AL110261|MFRP|83552|membrane frizzled-related protein	1.958172	0.0	denovo_WM_7:31:0.221	denovo_WM_7:34:0.411	denovo_WM_7:57:0.504
chr19	16287060	16287163	reg1002140.p2	5.222	+	AB050868 BC069320 BC069428 BC069524 NM_054113 HQ258101 BC112200 BC113591	-2801	-	TSC_hg19_v1_chr19_+_16254533 AK027792 AK131222 AK300027 AK298682 AK307563 BC016826	-32609	+	TSC_hg19_v1_chr19_-_16250705 AK095221	-36407	-	TSC_hg19_v1_chr19_+_16296220 AK312058 BC000639 AL050157 NM_014077 BC017286 AF151902 AM393549 AM393669	9121	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	21639	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	148530	+	AB050868|CIB3|117286|calcium and integrin binding family member 3##BC069320|CIB3|117286|calcium and integrin binding family member 3##BC069428|CIB3|117286|calcium and integrin binding family member 3##BC069524|CIB3|117286|calcium and integrin binding family member 3##NM_054113|CIB3|117286|calcium and integrin binding family member 3##HQ258101|CIB3|117286|calcium and integrin binding family member 3##BC112200|CIB3|117286|calcium and integrin binding family member 3##BC113591|CIB3|117286|calcium and integrin binding family member 3##AK027792|HSH2D|84941|hematopoietic SH2 domain containing##AK131222|HSH2D|84941|hematopoietic SH2 domain containing##AK300027|HSH2D|84941|hematopoietic SH2 domain containing##AK298682|HSH2D|84941|hematopoietic SH2 domain containing##AK307563|HSH2D|84941|hematopoietic SH2 domain containing##BC016826|HSH2D|84941|hematopoietic SH2 domain containing##AK312058|FAM32A|26017|family with sequence similarity 32, member A##BC000639|FAM32A|26017|family with sequence similarity 32, member A##AL050157|FAM32A|26017|family with sequence similarity 32, member A##NM_014077|FAM32A|26017|family with sequence similarity 32, member A##BC017286|FAM32A|26017|family with sequence similarity 32, member A##AF151902|FAM32A|26017|family with sequence similarity 32, member A##AM393549|FAM32A|26017|family with sequence similarity 32, member A##AM393669|FAM32A|26017|family with sequence similarity 32, member A##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)	0.0	0.0	
chr8	121646985	121647103	reg1010749.p1	5.222	+	TSC_hg19_v1_chr8_+_121457658 AK022122 AK300762 BC013136 NM_022045 EU176294 EU176618	-189368	+	BC021744 NM_014078	-189409	-	TSC_hg19_v1_chr8_-_121457391 AK311924	-189651	-	TSC_hg19_v1_chr8_+_121823539 AK302130	176497	+	TSC_hg19_v1_chr8_-_121823718 AF028828	176717	-	TSC_hg19_v1_chr8_-_121824090 AB590740	177019	-	AK022122|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##AK300762|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC013136|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##NM_022045|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176294|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176618|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##AF028828|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	0.991596	0.0	denovo_WM_7:56:0.331	denovo_WM_7:57:0.331	denovo_WM_7:58:0.331
chr9	134907719	134907886	reg1010308.p1	5.222	+	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	-292512	-	D21239 NM_005312	-294878	-	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	-322600	-	Z36848 AF104252 AF230382 DQ099387 AB527898 EU446747 TSC_hg19_v1_chr9_-_134955238 BC064608 BC070331	47347	-	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	47448	-	TSC_hg19_v1_chr9_+_135037083 AY358165	129289	+	EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##Z36848|MED27|9442|mediator complex subunit 27##AF104252|MED27|9442|mediator complex subunit 27##AF230382|MED27|9442|mediator complex subunit 27##DQ099387|MED27|9442|mediator complex subunit 27##EU446747|MED27|9442|mediator complex subunit 27##BC064608|MED27|9442|mediator complex subunit 27##BC070331|MED27|9442|mediator complex subunit 27##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AY358165|NTNG2|84628|netrin G2	0.920206	0.0	denovo_WM_7:4:0.763
chr16	21948773	21948887	reg1007948.p1	5.221	+	AK316459 AK296301 AK303500 AK301703 AK294452 TSC_hg19_v1_chr16_-_21854901	-94002	-	BC009198 BC068999 TSC_hg19_v1_chr16_-_21831777 BC070157	-117070	-	AK093062 AX747895 NM_170664 BC040551 AK302733	-232513	+	NM_003366 AK307535 TSC_hg19_v1_chr16_+_21964618	15798	+	TSC_hg19_v1_chr16_+_21964679 J04973 BC003136	15855	+	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	15891	+	AK316459|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296301|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AK303500|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK301703|LOC613037|613037|nuclear pore complex interacting protein pseudogene##AK294452|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC009198|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC068999|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC070157|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##AK093062|OTOA|146183|otoancorin##NM_170664|OTOA|146183|otoancorin##BC040551|OTOA|146183|otoancorin##AK302733|OTOA|146183|otoancorin##NM_003366|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK307535|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##J04973|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##BC003136|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II	0.955887	0.0	denovo_WM_7:-17:0.219	denovo_WM_7:-18:0.370
chr19	10223552	10223732	reg1007979.p1	5.221	+	NM_002566 BC073827	-1438	+	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	-6653	+	AY358276 BC142632 AB054064 NM_031917 AF230330	-10242	-	AB528489 BT006889 CR457134 CU678971 DQ890616 DQ896801 AF020833 U96074 TSC_hg19_v1_chr19_-_10230579 AK293374 AF094850 AK309944 AK316040 AK291320 BC000733 BC008469 AK316335 AK315896 AK296377 AK311624 NM_003755	6924	-	AF290894 TSC_hg19_v1_chr19_-_10291113 AB384943	67442	-	AB209413 TSC_hg19_v1_chr19_-_10305579	81915	-	NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##BT006889|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##CR457134|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##DQ890616|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##DQ896801|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AF020833|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##U96074|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK293374|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AF094850|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK309944|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK316040|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK291320|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##BC000733|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##BC008469|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK316335|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK315896|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK296377|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##NM_003755|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AB209413|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1	0.0	0.011196	
chr18	51811826	51811940	reg1010364.p2	5.220	+	NM_007195 TSC_hg19_v1_chr18_+_51795943 AK301578 AF140501 BC032617 BC032662 AL136670 AF245438 AK093688 AB463184 AM392978 DQ890893 DQ896811 CU689468	-15943	+	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	-60806	-	TSC_hg19_v1_chr18_-_51750997 BC032638	-60918	-	AB528241 AF480305 NM_139171	69059	-	BX640877 NM_173529	73287	+	AK096425 NM_173629	446506	+	NM_007195|POLI|11201|polymerase (DNA directed) iota##AK301578|POLI|11201|polymerase (DNA directed) iota##AF140501|POLI|11201|polymerase (DNA directed) iota##BC032617|POLI|11201|polymerase (DNA directed) iota##BC032662|POLI|11201|polymerase (DNA directed) iota##AL136670|POLI|11201|polymerase (DNA directed) iota##AF245438|POLI|11201|polymerase (DNA directed) iota##AK093688|POLI|11201|polymerase (DNA directed) iota##AM392978|POLI|11201|polymerase (DNA directed) iota##DQ890893|POLI|11201|polymerase (DNA directed) iota##DQ896811|POLI|11201|polymerase (DNA directed) iota##AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF480305|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##NM_139171|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##BX640877|C18orf54|162681|chromosome 18 open reading frame 54##NM_173529|C18orf54|162681|chromosome 18 open reading frame 54##AK096425|C18orf26|284254|chromosome 18 open reading frame 26##NM_173629|C18orf26|284254|chromosome 18 open reading frame 26	0.037777	0.0	
chr3	47821721	47821901	reg1002156.p2	5.220	+	AK294621 NM_001206942 NM_001206945	-200082	-	AB463496 AF059274 TSC_hg19_v1_chr3_-_47620336 NM_001206943 NM_001206944 NM_006574	-201522	-	DQ787088 BC000623 BC014204 TSC_hg19_v1_chr3_-_47555203 AK225721 AK000218 AK298202 NM_001031703	-266669	-	TSC_hg19_v1_chr3_-_47823302 EU832157 EU832251	1478	-	TSC_hg19_v1_chr3_-_47823315 BC039843 U66615	1507	-	BC050564 TSC_hg19_v1_chr3_-_47823334	1523	-	AK294621|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206942|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206945|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##AF059274|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206943|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_001206944|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##NM_006574|CSPG5|10675|chondroitin sulfate proteoglycan 5 (neuroglycan C)##DQ787088|C3orf75|54859|chromosome 3 open reading frame 75##BC000623|C3orf75|54859|chromosome 3 open reading frame 75##BC014204|C3orf75|54859|chromosome 3 open reading frame 75##AK225721|C3orf75|54859|chromosome 3 open reading frame 75##AK000218|C3orf75|54859|chromosome 3 open reading frame 75##AK298202|C3orf75|54859|chromosome 3 open reading frame 75##NM_001031703|C3orf75|54859|chromosome 3 open reading frame 75##EU832157|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##EU832251|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC039843|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##U66615|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1##BC050564|SMARCC1|6599|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.0	0.0	
chr6	16205132	16205312	reg1008636.p1	5.220	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-61912	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-75785	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	-75920	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	33629	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	556475	-	NM_001190766	897266	+	AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236	1.990823	0.0	denovo_WM_7:-6:0.270	denovo_WM_7:-7:0.727	denovo_WM_7:-22:0.860
chr11	123631500	123631650	reg1008308.p1	5.219	+	NM_001005188 BC136855 BC136856	-6337	-	TSC_hg19_v1_chr11_-_123612369 AK226047	-19202	-	AK023751 TSC_hg19_v1_chr11_-_123612326 BC013382 NM_003455	-19230	-	NM_001005325 BC136929 BC136931	45500	-	AY634366 NM_001013743	124764	-	BC137180 BC137206 NM_001005197	145542	+	NM_001005188|OR6X1|390260|olfactory receptor, family 6, subfamily X, member 1##BC136855|OR6X1|390260|olfactory receptor, family 6, subfamily X, member 1##BC136856|OR6X1|390260|olfactory receptor, family 6, subfamily X, member 1##AK226047|ZNF202|7753|zinc finger protein 202##AK023751|ZNF202|7753|zinc finger protein 202##BC013382|ZNF202|7753|zinc finger protein 202##NM_003455|ZNF202|7753|zinc finger protein 202##NM_001005325|OR6M1|390261|olfactory receptor, family 6, subfamily M, member 1##BC136929|OR6M1|390261|olfactory receptor, family 6, subfamily M, member 1##BC136931|OR6M1|390261|olfactory receptor, family 6, subfamily M, member 1##AY634366|TMEM225|338661|transmembrane protein 225##NM_001013743|TMEM225|338661|transmembrane protein 225##BC137180|OR8D4|338662|olfactory receptor, family 8, subfamily D, member 4##BC137206|OR8D4|338662|olfactory receptor, family 8, subfamily D, member 4##NM_001005197|OR8D4|338662|olfactory receptor, family 8, subfamily D, member 4	0.998171	0.0	
chr3	112124926	112125042	reg1011155.p2	5.219	+	AL832529 AK129797 AK293399 BC031103 TSC_hg19_v1_chr3_+_112052024 AK074972	-72960	+	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	-73026	+	BC044801 NM_183061 AK128084	-111896	-	AK292692 NM_001085357 NM_181780	93411	-	AK307432 AB079384 CU692886 DQ893424 DQ896774 AF202092 TSC_hg19_v1_chr3_-_112280499 BC024221 NM_022488 AL137515	155458	-	TSC_hg19_v1_chr3_-_112280761 BC002830	155777	-	AL832529|CD200|4345|CD200 molecule##AK129797|CD200|4345|CD200 molecule##AK293399|CD200|4345|CD200 molecule##BC031103|CD200|4345|CD200 molecule##AK074972|CD200|4345|CD200 molecule##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK292692|BTLA|151888|B and T lymphocyte associated##NM_001085357|BTLA|151888|B and T lymphocyte associated##NM_181780|BTLA|151888|B and T lymphocyte associated##AK307432|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AB079384|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ893424|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ896774|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AF202092|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC024221|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##NM_022488|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AL137515|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC002830|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)	0.990977	0.0	
chr1	200347843	200347948	reg1009938.p2	5.218	+	NM_001105517	-165240	+	AK316513 TSC_hg19_v1_chr1_+_200011716	-336171	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	-351026	+	AK021707 TSC_hg19_v1_chr1_-_200377270	29374	-	TSC_hg19_v1_chr1_-_200377488 AK022921	29643	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	31014	-	NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK021707|ZNF281|23528|zinc finger protein 281##AK022921|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281	2.983647	0.0	denovo_WM_7:60:0.902	denovo_WM_7:75:0.361	denovo_WM_7:76:0.281	denovo_WM_7:92:0.281	denovo_WM_7:93:0.439
chr14	50467698	50467876	reg1009373.p1	5.218	+	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-107381	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-107954	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	-107969	+	AK091232 AX746864 NM_001012706	6450	-	AF390030 NM_001014830	91573	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	115483	-	AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D	0.999409	0.0	denovo_WM_7:6:0.739
chr1	55088316	55088474	reg1008194.p1	5.218	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	-74501	+	TSC_hg19_v1_chr1_+_55007956 AK091112	-80434	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-216311	-	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	753	-	NM_001039464 BC028620 CR749830 AK302446 AK302703 BX648088 AK093272 AX748025 BC144516 AK301894	19058	+	AK025524 NM_004623 TSC_hg19_v1_chr1_+_55181537 AF063602 AK292426 AK090964 AX746706 AK222562 AF073887 BC001276 BT006817 CU674642	93142	+	NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A##NM_001039464|HEATR8|374977|HEAT repeat containing 8##BC028620|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##CR749830|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##AK302446|HEATR8|374977|HEAT repeat containing 8##AK302703|HEATR8|374977|HEAT repeat containing 8##BX648088|HEATR8-TTC4|100527960|HEATR8-TTC4 readthrough##AK093272|HEATR8|374977|HEAT repeat containing 8##BC144516|HEATR8|374977|HEAT repeat containing 8##AK301894|HEATR8|374977|HEAT repeat containing 8##AK025524|TTC4|7268|tetratricopeptide repeat domain 4##NM_004623|TTC4|7268|tetratricopeptide repeat domain 4##AF063602|TTC4|7268|tetratricopeptide repeat domain 4##AK292426|TTC4|7268|tetratricopeptide repeat domain 4##AK090964|TTC4|7268|tetratricopeptide repeat domain 4##AK222562|TTC4|7268|tetratricopeptide repeat domain 4##AF073887|TTC4|7268|tetratricopeptide repeat domain 4##BC001276|TTC4|7268|tetratricopeptide repeat domain 4##BT006817|TTC4|7268|tetratricopeptide repeat domain 4	0.0	0.0	
chr12	12700433	12700561	reg1010807.p1	5.217	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-190332	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-197325	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-280655	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	14903	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	64298	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	64386	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	2.598959	0.0	denovo_WM_7:-7:0.482	denovo_WM_7:-22:0.262	denovo_WM_7:-23:0.356	denovo_WM_7:-97:0.654
chr14	24712582	24712699	reg1009355.p1	5.217	+	AK315084 AF195512 AK294119 BX161478 TSC_hg19_v1_chr14_-_24711819 AK023166 AK225379 BC019343 BC000710 NM_001099274 NM_012461	-817	-	CU678872 DQ893390 DQ896711 TSC_hg19_v1_chr14_-_24711567 BC005030	-1041	-	NM_001002002 NM_016576 BC003053 BC008021 BX247993 BC009832	-10510	+	M55183 BC034699 D90287 AK315828 M62925 AK291350 AK299436 AK315843 AK301652 AK315819 NM_000359	19739	-	TSC_hg19_v1_chr14_-_24740390 AK303247	27748	-	TSC_hg19_v1_chr14_+_24740427 AB593166	27797	+	AK315084|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##AF195512|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##AK294119|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##BX161478|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##AK023166|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##AK225379|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##BC019343|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##NM_001099274|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##NM_012461|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##DQ893390|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##DQ896711|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##BC005030|TINF2|26277|TERF1 (TRF1)-interacting nuclear factor 2##NM_001002002|GMPR2|51292|guanosine monophosphate reductase 2##NM_016576|GMPR2|51292|guanosine monophosphate reductase 2##BC003053|GMPR2|51292|guanosine monophosphate reductase 2##BC008021|GMPR2|51292|guanosine monophosphate reductase 2##BX247993|GMPR2|51292|guanosine monophosphate reductase 2##BC009832|GMPR2|51292|guanosine monophosphate reductase 2##M55183|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##BC034699|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##D90287|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK315828|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##M62925|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK291350|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK299436|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK315843|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK301652|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK315819|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##NM_000359|TGM1|7051|transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase)##AK303247|RABGGTA|5875|Rab geranylgeranyltransferase, alpha subunit	0.989384	0.0	
chr5	84671432	84671588	reg1010300.p1	5.217	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-990846	-	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	-991264	-	AK313713 NM_001884 X17405 X78076 X78075	-1654576	-	TSC_hg19_v1_chr5_+_85913757 AK026505	1242248	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	1242307	+	TSC_hg19_v1_chr5_+_86563706 CR749722	1892175	+	BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.99637	0.0	denovo_WM_7:-3:0.313	denovo_WM_7:-4:0.313	denovo_WM_7:-5:0.313
chrX	49765970	49766045	reg1008364.p1	5.217	+	TSC_hg19_v1_chrX_+_49687274 AK092049 NM_001127898 NM_001127899 AK056560	-78761	+	NM_001145073	-121538	+	NM_007003 AK312039 AF275258 AJ005894 AK092503 AX747575	-172080	+	NM_000084 AK308089 TSC_hg19_v1_chrX_+_49832243 AK290940	66238	+	NM_139289 BC033007 BC070150 TSC_hg19_v1_chrX_-_49965024	199006	-	AK292463 BC126250 BC126252 NM_003886 Y15195	199653	-	AK092049|CLCN5|1184|chloride channel 5##NM_001127898|CLCN5|1184|chloride channel 5##NM_001127899|CLCN5|1184|chloride channel 5##AK056560|CLCN5|1184|chloride channel 5##NM_001145073|USP27X|389856|ubiquitin specific peptidase 27, X-linked##NM_007003|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK312039|PAGE4|9506|P antigen family, member 4 (prostate associated)##AF275258|PAGE4|9506|P antigen family, member 4 (prostate associated)##AJ005894|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK092503|PAGE4|9506|P antigen family, member 4 (prostate associated)##NM_000084|CLCN5|1184|chloride channel 5##AK308089|CLCN5|1184|chloride channel 5##AK290940|CLCN5|1184|chloride channel 5##NM_139289|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC033007|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC070150|AKAP4|8852|A kinase (PRKA) anchor protein 4##AK292463|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC126250|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC126252|AKAP4|8852|A kinase (PRKA) anchor protein 4##NM_003886|AKAP4|8852|A kinase (PRKA) anchor protein 4##Y15195|AKAP4|8852|A kinase (PRKA) anchor protein 4	1.037074	0.0	denovo_WM_7:8:0.286	denovo_WM_7:9:0.664
chr5	142602695	142602834	reg1009041.p1	5.216	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-452456	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-452792	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-525193	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	180059	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	180342	-	BC015610 TSC_hg19_v1_chr5_-_142783214	180447	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.230756	0.0	denovo_WM_7:-3:0.218
chr9	126629463	126629587	reg1009241.p1	5.216	+	NM_173689 AK123000 DQ426866 AY720432	-511032	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-598637	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-598705	-	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	62786	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	144358	+	TSC_hg19_v1_chr9_+_126774046 BC034458	144546	+	NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC034458|LHX2|9355|LIM homeobox 2	0.0	0.0	
chr9	86235822	86235931	reg1010083.p1	5.216	+	AK094281 EF560742 TSC_hg19_v1_chr9_-_86153270 AK297722 AK223597 NM_001244959 NM_174938 BC041376	-82671	-	NM_001244960 AY137774	-153217	-	BC037253 NM_001244961	-289001	-	BC142991 BC036421 BC045782 TSC_hg19_v1_chr9_+_86238057 NM_001001551 NM_001190727 AY615889	2104	+	AF176069 AF293384 AB528730 TSC_hg19_v1_chr9_-_86322601	86724	-	TSC_hg19_v1_chr9_-_86322844 BC010066	86971	-	AK094281|FRMD3|257019|FERM domain containing 3##EF560742|FRMD3|257019|FERM domain containing 3##AK297722|FRMD3|257019|FERM domain containing 3##AK223597|FRMD3|257019|FERM domain containing 3##NM_001244959|FRMD3|257019|FERM domain containing 3##NM_174938|FRMD3|257019|FERM domain containing 3##BC041376|FRMD3|257019|FERM domain containing 3##NM_001244960|FRMD3|257019|FERM domain containing 3##AY137774|FRMD3|257019|FERM domain containing 3##BC037253|FRMD3|257019|FERM domain containing 3##NM_001244961|FRMD3|257019|FERM domain containing 3##BC142991|C9orf103|414328|chromosome 9 open reading frame 103##BC036421|C9orf103|414328|chromosome 9 open reading frame 103##BC045782|C9orf103|414328|chromosome 9 open reading frame 103##NM_001001551|C9orf103|414328|chromosome 9 open reading frame 103##NM_001190727|C9orf103|414328|chromosome 9 open reading frame 103##AY615889|C9orf103|414328|chromosome 9 open reading frame 103##AF176069|UBQLN1|29979|ubiquilin 1##AF293384|UBQLN1|29979|ubiquilin 1##BC010066|UBQLN1|29979|ubiquilin 1	0.949883	0.995104	CTCF.p2:-5:0.995	denovo_WM_7:18:0.950
chr17	76775510	76775643	reg1002902.p5	5.215	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-42578	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-55825	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-55929	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	2777	-	BC071582 TSC_hg19_v1_chr17_-_76836610	61074	-	TSC_hg19_v1_chr17_-_76836843 AK225426	61207	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	1.019899	0.0	
chr9	82208117	82208233	reg1006290.p1	5.215	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-20490	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-20651	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-21289	+	BC010100 NM_005077	2095420	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2096252	-	NM_001145197 AK125847 AK308327	2335196	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	0.981337	0.0	denovo_WM_7:-47:0.981
chr12	1692743	1692871	reg1004878.p2	5.214	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-592355	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-633981	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-675725	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	10544	-	AY009399 NM_030775	33414	+	BC001749 NM_032642	45604	+	NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B	0.0	0.961105	CTCF.p2:24:0.961
chr13	88189192	88189331	reg1010399.p2	5.214	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-1815822	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-3732761	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-3732836	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	135608	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	3861643	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	5690166	+	BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6	0.999364	0.0	denovo_WM_7:-8:0.841
chr2	128554087	128554235	reg1010642.p2	5.214	+	BC133675 TSC_hg19_v1_chr2_+_128459070 AK074549	-95136	+	NM_032740	-95565	+	NM_001161404	-114802	-	BC108671 TSC_hg19_v1_chr2_-_128568739 AB044749 AK002156 BC013990 BC068484 AK223319	14542	-	BC005401 TSC_hg19_v1_chr2_-_128568746 NM_001006622 NM_001006623 NM_018383	14595	-	AB464041 TSC_hg19_v1_chr2_-_128615689	61520	-	AK074549|SFT2D3|84826|SFT2 domain containing 3##NM_032740|SFT2D3|84826|SFT2 domain containing 3##NM_001161404|LIMS2|55679|LIM and senescent cell antigen-like domains 2##BC108671|WDR33|55339|WD repeat domain 33##AB044749|WDR33|55339|WD repeat domain 33##AK002156|WDR33|55339|WD repeat domain 33##BC013990|WDR33|55339|WD repeat domain 33##BC068484|WDR33|55339|WD repeat domain 33##AK223319|WDR33|55339|WD repeat domain 33##BC005401|WDR33|55339|WD repeat domain 33##NM_001006622|WDR33|55339|WD repeat domain 33##NM_001006623|WDR33|55339|WD repeat domain 33##NM_018383|WDR33|55339|WD repeat domain 33	0.0	0.0	
chr2	85254398	85254503	reg1010501.p2	5.214	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	-55959	+	TSC_hg19_v1_chr2_+_85198299 NM_020122	-56166	+	TSC_hg19_v1_chr2_+_85133055 M92381	-121388	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	106209	+	TSC_hg19_v1_chr2_-_85555100 CU678967 EU176441 EU176775 X94333 BC028219	300622	-	AK223063 TSC_hg19_v1_chr2_-_85555113 AK126465 AK222829 BX640733 AK312479 BC008461 AF027515 AF027516 U62390	300680	-	BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##M92381|TMSB10|9168|thymosin beta 10##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##EU176441|TGOLN2|10618|trans-golgi network protein 2##EU176775|TGOLN2|10618|trans-golgi network protein 2##X94333|TGOLN2|10618|trans-golgi network protein 2##BC028219|TGOLN2|10618|trans-golgi network protein 2##AK223063|TGOLN2|10618|trans-golgi network protein 2##AK126465|TGOLN2|10618|trans-golgi network protein 2##AK222829|TGOLN2|10618|trans-golgi network protein 2##BX640733|TGOLN2|10618|trans-golgi network protein 2##AK312479|TGOLN2|10618|trans-golgi network protein 2##BC008461|TGOLN2|10618|trans-golgi network protein 2##AF027515|TGOLN2|10618|trans-golgi network protein 2##AF027516|TGOLN2|10618|trans-golgi network protein 2##U62390|TGOLN2|10618|trans-golgi network protein 2	1.744389	0.0	denovo_WM_7:44:0.289	denovo_WM_7:45:0.347	denovo_WM_7:46:0.237	denovo_WM_7:59:0.298	denovo_WM_7:60:0.304	denovo_WM_7:61:0.269
chr9	102428963	102429096	reg1009006.p1	5.214	+	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-444442	+	TSC_hg19_v1_chr9_-_101984233 NM_033087	-444786	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	-444812	-	TSC_hg19_v1_chr9_-_102582187 AK057451	153136	-	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	155128	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	239898	+	AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17	0.935714	0.0	denovo_WM_7:-29:0.881
chr10	112678431	112678530	reg1005207.p1	5.213	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	-46766	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	-46868	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-274351	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	216	-	TSC_hg19_v1_chr10_-_112678952 BC062778 AK021501 BC104248 BC104249 BC113000 BC113001 AK025724 BC105804 AK307314 BC073157 NM_001195304 NM_001195305 NM_001195307 NM_001243783	532	-	TSC_hg19_v1_chr10_+_112679309 NM_007373	815	+	AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1##BC062778|BBIP1|92482|BBSome interacting protein 1##AK021501|BBIP1|92482|BBSome interacting protein 1##BC104248|BBIP1|92482|BBSome interacting protein 1##BC104249|BBIP1|92482|BBSome interacting protein 1##BC113000|BBIP1|92482|BBSome interacting protein 1##BC113001|BBIP1|92482|BBSome interacting protein 1##AK025724|BBIP1|92482|BBSome interacting protein 1##BC105804|BBIP1|92482|BBSome interacting protein 1##AK307314|BBIP1|92482|BBSome interacting protein 1##BC073157|BBIP1|92482|BBSome interacting protein 1##NM_001195304|BBIP1|92482|BBSome interacting protein 1##NM_001195305|BBIP1|92482|BBSome interacting protein 1##NM_001195307|BBIP1|92482|BBSome interacting protein 1##NM_001243783|BBIP1|92482|BBSome interacting protein 1##NM_007373|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)	0.0	0.0	
chr6	111127483	111127646	reg1010511.p1	5.213	+	TSC_hg19_v1_chr6_-_110797837 BC047565 NM_033125	-329701	-	TSC_hg19_v1_chr6_-_110797817 AK304546	-329746	-	BC012014 AF268892 AY145502 BC037247 TSC_hg19_v1_chr6_-_110797794	-329776	-	AK304351 TSC_hg19_v1_chr6_+_111135843	8269	+	BC047513 TSC_hg19_v1_chr6_-_111136246	8654	-	AJ420571 TSC_hg19_v1_chr6_-_111136300	8735	-	BC047565|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##NM_033125|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304546|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC012014|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AF268892|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AY145502|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC037247|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304351|AMD1|262|adenosylmethionine decarboxylase 1##BC047513|CDK19|23097|cyclin-dependent kinase 19##AJ420571|CDK19|23097|cyclin-dependent kinase 19	0.997175	0.0	denovo_WM_7:-13:0.976
chrX	1653936	1654112	reg1011059.p1	5.213	+	AK301844 NM_001173473	-81373	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-82223	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-143055	-	BC043610 GQ280263 NM_178129 AK126147	2014	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	56505	+	NM_004043 U11090	60323	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.998667	0.0	
chr11	65223511	65223635	reg1007628.p1	5.212	+	TSC_hg19_v1_chr11_+_65193527 AF080092 AF508303	-30050	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	-31173	+	TSC_hg19_v1_chr11_+_65190274 AK026198	-33295	+	TSC_hg19_v1_chr11_+_65265158 EF177381	41630	+	TSC_hg19_v1_chr11_+_65266515 BC025986 BX538238 FJ209305	42928	+	TSC_hg19_v1_chr11_+_65266869 BC104662	43226	+	AF080092|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF508303|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##EF177381|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BC025986|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BX538238|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	0.994955	0.0	
chr8	30839080	30839219	reg1006717.p2	5.212	+	AF285605 NM_031271 BC140934	-132580	-	TSC_hg19_v1_chr8_-_30670335 NM_001009552	-168798	-	TSC_hg19_v1_chr8_-_30670318 AK091875	-168837	-	BC106708 NM_013357	51167	-	NM_000553	51628	+	AF195513 AY077841 NM_001015508	52081	-	AF285605|TEX15|56154|testis expressed 15##NM_031271|TEX15|56154|testis expressed 15##BC140934|TEX15|56154|testis expressed 15##NM_001009552|PPP2CB|5516|protein phosphatase 2, catalytic subunit, beta isozyme##AK091875|PPP2CB|5516|protein phosphatase 2, catalytic subunit, beta isozyme##BC106708|PURG|29942|purine-rich element binding protein G##NM_013357|PURG|29942|purine-rich element binding protein G##NM_000553|WRN|7486|Werner syndrome, RecQ helicase-like##AF195513|PURG|29942|purine-rich element binding protein G##AY077841|PURG|29942|purine-rich element binding protein G##NM_001015508|PURG|29942|purine-rich element binding protein G	0.99693	0.0	
chr16	11769013	11769152	reg1008142.p1	5.210	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-6784	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-88293	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-88895	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	67574	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	121969	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	122033	-	NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A	1.983235	0.0	denovo_WM_7:23:0.857	denovo_WM_7:43:0.253
chr19	2183074	2183196	reg1009451.p1	5.210	+	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	-18997	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-31582	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-31593	-	BC021037 TSC_hg19_v1_chr19_+_2222534	39339	+	BC032803 TSC_hg19_v1_chr19_+_2232168	48986	+	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	53154	-	AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1	0.0	0.0	
chr2	136809455	136809635	reg1008901.p1	5.210	+	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-66329	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	-66416	-	BT006710 CU674308 DQ890741 DQ893912 TSC_hg19_v1_chr2_-_136743053 CR749809 BC107749 AY762100	-66490	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	64253	-	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	66131	-	TSC_hg19_v1_chr2_+_137523114 AK299929	713571	+	AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##BT006710|DARS|1615|aspartyl-tRNA synthetase##DQ890741|DARS|1615|aspartyl-tRNA synthetase##DQ893912|DARS|1615|aspartyl-tRNA synthetase##CR749809|DARS|1615|aspartyl-tRNA synthetase##BC107749|DARS|1615|aspartyl-tRNA synthetase##AY762100|DARS|1615|aspartyl-tRNA synthetase##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B	0.468257	0.0	denovo_WM_7:61:0.203	denovo_WM_7:65:0.265
chr2	71588894	71589044	reg1009860.p1	5.210	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	-30072	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	-85243	+	TSC_hg19_v1_chr2_-_71454205 AB032981 NM_020459	-134739	-	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	91832	+	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	104924	+	AK295683 TSC_hg19_v1_chr2_-_72371202	782230	-	NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##AB032981|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_020459|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1	0.0	0.0	
chr5	151120280	151120427	reg1009273.p1	5.210	+	TSC_hg19_v1_chr5_-_151066495 AK096969 AK299441 AK315591 D28381 BC072457 NM_003118	-53845	-	Y00755 BC004974 J03040 TSC_hg19_v1_chr5_-_151066477	-53892	-	AF231022 NM_001447	-171849	-	TSC_hg19_v1_chr5_-_151138170 AK091843 AX747215 NM_004045 AK293063 BC112248 BC112250	17862	-	TSC_hg19_v1_chr5_-_151150991 AB593120	30620	-	TSC_hg19_v1_chr5_+_151151479 BX648012 NM_005754 NM_198395	31119	+	AK096969|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK299441|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK315591|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##D28381|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC072457|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##NM_003118|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##Y00755|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC004974|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##J03040|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AF231022|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##NM_001447|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##AK091843|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##NM_004045|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK293063|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112248|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112250|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AB593120|LOC100652758|100652758|uncharacterized LOC100652758##BX648012|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_005754|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_198395|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1	0.0	0.999409	CTCF.p2:32:0.999
chr9	76157156	76157289	reg1011014.p2	5.210	+	TSC_hg19_v1_chr9_+_75766797 BC001275	-390419	+	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	-390444	+	NM_000689	-588990	-	NM_006914 BC051830 Y08639	955052	+	AY333284 NM_001177311	1345040	-	AY333283 NM_001177310 AF448232 AY333282 AY333285 AY333286 AY333287 AY333288	1345512	-	BC001275|ANXA1|301|annexin A1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1##NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##NM_006914|RORB|6096|RAR-related orphan receptor B##BC051830|RORB|6096|RAR-related orphan receptor B##Y08639|RORB|6096|RAR-related orphan receptor B##AY333284|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177311|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333283|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177310|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AF448232|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333282|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333285|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333286|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333287|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333288|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6	0.0	0.0	
chr11	107729647	107729827	reg1002804.p1	5.209	+	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	-149	-	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	-232	-	BC104185 BC113930 BC113987 BC104150 BC094685 AK312097 BC005261 U96094 NM_003063	-146978	-	NM_017515	176	-	TSC_hg19_v1_chr11_+_107799171 AK292969 BC028064 NM_017516 X99962	69498	+	NM_003478 AK125294	149695	+	AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##BC104185|SLN|6588|sarcolipin##BC113930|SLN|6588|sarcolipin##BC113987|SLN|6588|sarcolipin##BC104150|SLN|6588|sarcolipin##BC094685|SLN|6588|sarcolipin##AK312097|SLN|6588|sarcolipin##BC005261|SLN|6588|sarcolipin##U96094|SLN|6588|sarcolipin##NM_003063|SLN|6588|sarcolipin##NM_017515|SLC35F2|54733|solute carrier family 35, member F2##AK292969|RAB39A|54734|RAB39A, member RAS oncogene family##BC028064|RAB39A|54734|RAB39A, member RAS oncogene family##NM_017516|RAB39A|54734|RAB39A, member RAS oncogene family##X99962|RAB39A|54734|RAB39A, member RAS oncogene family##NM_003478|CUL5|8065|cullin 5##AK125294|CUL5|8065|cullin 5	0.020268	0.0	
chr13	20355160	20355317	reg1008739.p1	5.209	+	TSC_hg19_v1_chr13_-_20346399 AL834505	-8798	-	TSC_hg19_v1_chr13_+_20207808 AK300258 NM_017520 BC017322 AK092556 AX747597 AL832864 BC003542	-147403	+	BC128146 BC128147 AJ421032 AY219890 NM_001141968 NM_130785 NM_199254	-244345	-	CR457272 DQ892679 DQ895922 AB528394 AF448795 AF449627 TSC_hg19_v1_chr13_-_20357042	1677	-	TSC_hg19_v1_chr13_-_20357070 BC014184	1818	-	AK001817 AK301554 TSC_hg19_v1_chr13_-_20357084	1845	-	AL834505|PSPC1|55269|paraspeckle component 1##AK300258|MPHOSPH8|54737|M-phase phosphoprotein 8##NM_017520|MPHOSPH8|54737|M-phase phosphoprotein 8##BC017322|MPHOSPH8|54737|M-phase phosphoprotein 8##AK092556|MPHOSPH8|54737|M-phase phosphoprotein 8##AL832864|MPHOSPH8|54737|M-phase phosphoprotein 8##BC003542|MPHOSPH8|54737|M-phase phosphoprotein 8##BC128146|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##BC128147|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##AJ421032|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##AY219890|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_001141968|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_130785|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##NM_199254|TPTE2|93492|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2##CR457272|PSPC1|55269|paraspeckle component 1##DQ892679|PSPC1|55269|paraspeckle component 1##DQ895922|PSPC1|55269|paraspeckle component 1##AF448795|PSPC1|55269|paraspeckle component 1##AF449627|PSPC1|55269|paraspeckle component 1##BC014184|PSPC1|55269|paraspeckle component 1##AK001817|PSPC1|55269|paraspeckle component 1##AK301554|PSPC1|55269|paraspeckle component 1	1.664549	0.0	denovo_WM_7:54:0.238	denovo_WM_7:55:0.238	denovo_WM_7:56:0.238	denovo_WM_7:57:0.238	denovo_WM_7:89:0.667
chr16	68309715	68309895	reg1005046.p2	5.208	+	TSC_hg19_v1_chr16_+_68298430 NM_001076785 NM_003983 CR749291 CR749475 AK310866 BC028216	-11355	+	AB017494 TSC_hg19_v1_chr16_+_68279299 AY358425 EU832326	-30494	+	AK300596 AK074828 NM_012320 TSC_hg19_v1_chr16_+_68279275 AK296263 AK298494 AL110209 BC062605 AK001705 AK222790	-30555	+	TSC_hg19_v1_chr16_-_68344850 BC013778 AK023353 AK091674 AK225712 AY078070 NM_032178	35021	-	TSC_hg19_v1_chr16_+_68344946 NM_001184824 NM_019023 AK001502 AK304605 AK056647	35154	+	TSC_hg19_v1_chr16_-_68482409 AK289651 NM_018667 BC041828	172676	-	NM_001076785|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##NM_003983|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749291|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749475|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AK310866|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##BC028216|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AB017494|PLA2G15|23659|phospholipase A2, group XV##AY358425|PLA2G15|23659|phospholipase A2, group XV##EU832326|PLA2G15|23659|phospholipase A2, group XV##AK300596|PLA2G15|23659|phospholipase A2, group XV##AK074828|PLA2G15|23659|phospholipase A2, group XV##NM_012320|PLA2G15|23659|phospholipase A2, group XV##AK296263|PLA2G15|23659|phospholipase A2, group XV##AK298494|PLA2G15|23659|phospholipase A2, group XV##AL110209|PLA2G15|23659|phospholipase A2, group XV##BC062605|PLA2G15|23659|phospholipase A2, group XV##AK001705|PLA2G15|23659|phospholipase A2, group XV##AK222790|PLA2G15|23659|phospholipase A2, group XV##BC013778|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK023353|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK091674|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK225712|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AY078070|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_032178|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_001184824|PRMT7|54496|protein arginine methyltransferase 7##NM_019023|PRMT7|54496|protein arginine methyltransferase 7##AK001502|PRMT7|54496|protein arginine methyltransferase 7##AK304605|PRMT7|54496|protein arginine methyltransferase 7##AK056647|PRMT7|54496|protein arginine methyltransferase 7##AK289651|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_018667|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC041828|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	0.894459	0.0	denovo_WM_7:47:0.323	denovo_WM_7:49:0.330
chr19	38477384	38477495	reg1009537.p1	5.208	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-79527	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-79582	+	AK302913 AY026504 AK128826 NM_031951	-80165	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	237396	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	242877	-	TSC_hg19_v1_chr19_-_38720336 AK297581	242895	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.0	0.0	
chr3	4771849	4772029	reg1001520.p3	5.208	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-236743	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-236811	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-236908	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	249177	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	249242	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	249415	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	1.843114	0.0	denovo_WM_7:-31:0.682	denovo_WM_7:93:0.315	denovo_WM_7:95:0.552
chrY	1603937	1604110	reg1011060.p1	5.208	+	AK301844 NM_001173473	-81372	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-82222	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-143054	-	BC043610 GQ280263 NM_178129 AK126147	2015	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	56506	+	NM_004043 U11090	60324	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.998667	0.0	
chr1	16173597	16173732	reg1008154.p1	5.207	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-11308	-	BC012991 TSC_hg19_v1_chr1_-_16161389	-12330	-	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-39472	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	715	+	TSC_hg19_v1_chr1_+_16259065 BC172907	85447	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	128806	-	AK094772|FLJ37453|729614|uncharacterized LOC729614##NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17	0.92747	0.0	denovo_WM_7:-45:0.609	denovo_WM_7:-46:0.297
chr12	111051606	111051786	reg1004981.p2	5.207	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-30570	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-30626	-	TSC_hg19_v1_chr12_-_111020755 AY357944	-30903	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	229	+	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	75262	-	AK293543 NM_001040107	75903	-	AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1	0.0	0.0	
chr19	10527250	10527430	reg1007555.p1	5.207	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-13084	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-13127	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	-13171	-	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	163	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	3890	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	14087	+	NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.0	0.045623	
chr3	119120026	119120117	reg1005551.p1	5.207	+	TSC_hg19_v1_chr3_+_119013513 AK293726 BC112163 BC112165 AB384581 HQ258543	-106451	+	TSC_hg19_v1_chr3_+_119013229 AB033030 NM_020754	-106840	+	TSC_hg19_v1_chr3_-_118959726 AK001006 AK301688 AK314425 BX647468 CR749555 NM_003778 NM_212543	-160334	-	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	62398	-	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	67754	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	97402	+	AK293726|ARHGAP31|57514|Rho GTPase activating protein 31##BC112163|ARHGAP31|57514|Rho GTPase activating protein 31##BC112165|ARHGAP31|57514|Rho GTPase activating protein 31##HQ258543|ARHGAP31|57514|Rho GTPase activating protein 31##AB033030|ARHGAP31|57514|Rho GTPase activating protein 31##NM_020754|ARHGAP31|57514|Rho GTPase activating protein 31##AK001006|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK301688|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK314425|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BX647468|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##CR749555|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_003778|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_212543|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1	0.991743	0.0	denovo_WM_7:-43:0.331	denovo_WM_7:-44:0.331	denovo_WM_7:-45:0.331
chr7	33789813	33789993	reg1000465.p1	5.207	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-620822	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-640926	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-687581	-	AK289963 NM_133468 AK096150 BC060868	155239	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	908016	+	DQ287932 NM_015283	1287749	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	0.0	0.0	
chr20	5126395	5126556	reg1010008.p2	5.206	+	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-18780	+	TSC_hg19_v1_chr20_+_5107615 NM_003818 AK315489 Y16521 AK304763	-18953	+	AK300558 AK311014 NM_002592	-19249	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	168561	-	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	465112	-	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	604591	+	AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##NM_003818|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK315489|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##Y16521|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK304763|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196	0.993978	0.0	
chr5	133295050	133295225	reg1010480.p2	5.206	+	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	-346899	-	TSC_hg19_v1_chr5_-_132948202 AK055684	-346938	-	TSC_hg19_v1_chr5_+_132432890 AK315862	-862246	+	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	9238	-	TSC_hg19_v1_chr5_-_133340377 BC008482	45230	-	TSC_hg19_v1_chr5_-_133340386 BC090042	45246	-	NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##AK055684|FSTL4|23105|follistatin-like 4##AK315862|HSPA4|3308|heat shock 70kDa protein 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15##BC008482|VDAC1|7416|voltage-dependent anion channel 1##BC090042|VDAC1|7416|voltage-dependent anion channel 1	0.995703	0.0	
chr6	140692753	140692912	reg1011791.p1	5.206	+	NM_006079 TSC_hg19_v1_chr6_-_139695784	-997048	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	-997071	-	NM_001168389 NM_001168388	-997409	-	BC095542 GU727635 M73482 NM_002511	1717032	-	TSC_hg19_v1_chr6_+_142468399 AF151062 AK301376 BC006989 BC022536	1775558	+	TSC_hg19_v1_chr6_+_142468406 AL136684 AK130738 AF060225 AF271994 AK000051 NM_016485	1775574	+	NM_006079|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC095542|NMBR|4829|neuromedin B receptor##GU727635|NMBR|4829|neuromedin B receptor##M73482|NMBR|4829|neuromedin B receptor##NM_002511|NMBR|4829|neuromedin B receptor##AF151062|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK301376|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC006989|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC022536|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AL136684|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK130738|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF060225|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF271994|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK000051|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##NM_016485|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)	0.993967	0.0	denovo_WM_7:24:0.203	denovo_WM_7:25:0.716
chr6	164088795	164088957	reg1012398.p1	5.206	+	AL050218 TSC_hg19_v1_chr6_+_163984651	-104263	+	BC019917 TSC_hg19_v1_chr6_+_163836201 AB590716 DQ323998 EU832828 GQ129383 AY780788 AK027309	-252644	+	TSC_hg19_v1_chr6_+_163835795 AF272349	-253086	+	CU693196 TSC_hg19_v1_chr6_-_165723095 BC026278 NM_144980	1634216	-	AB026816 AF127480 NM_006661 AB020593 NM_001130690 TSC_hg19_v1_chr6_-_166075763	1986820	-	AY203946 TSC_hg19_v1_chr6_-_166076051	1987176	-	AL050218|QKI|9444|QKI, KH domain containing, RNA binding##BC019917|QKI|9444|QKI, KH domain containing, RNA binding##DQ323998|QKI|9444|QKI, KH domain containing, RNA binding##EU832828|QKI|9444|QKI, KH domain containing, RNA binding##GQ129383|QKI|9444|QKI, KH domain containing, RNA binding##AY780788|QKI|9444|QKI, KH domain containing, RNA binding##AK027309|QKI|9444|QKI, KH domain containing, RNA binding##AF272349|QKI|9444|QKI, KH domain containing, RNA binding##BC026278|C6orf118|168090|chromosome 6 open reading frame 118##NM_144980|C6orf118|168090|chromosome 6 open reading frame 118##AB026816|PDE10A|10846|phosphodiesterase 10A##AF127480|PDE10A|10846|phosphodiesterase 10A##NM_006661|PDE10A|10846|phosphodiesterase 10A##AB020593|PDE10A|10846|phosphodiesterase 10A##NM_001130690|PDE10A|10846|phosphodiesterase 10A##AY203946|LOC100132188|100132188|LP7097	0.0	0.0	
chr1	198634363	198634471	reg1002314.p3	5.205	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-26087	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-26192	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-26244	+	TSC_hg19_v1_chr1_-_198906559 EF413001	272130	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1362452	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1377307	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	1.037888	0.0	denovo_WM_7:-19:0.363	denovo_WM_7:-22:0.544
chr12	8796892	8796983	reg1005197.p1	5.205	+	AB040431 BC006296 NM_020661	-31498	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-103463	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-130706	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	18359	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	18464	-	AK124368 TSC_hg19_v1_chr12_-_8815486	18545	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	0.0	0.0	
chr6	53499275	53499398	reg1010585.p1	5.205	+	TSC_hg19_v1_chr6_-_53409900 AK304288 NM_001197115 NM_001498	-89425	-	TSC_hg19_v1_chr6_-_53409836 AK313480	-89501	-	TSC_hg19_v1_chr6_-_53409821 AB262176 BC022487	-89523	-	EF633513 NM_001003760	31169	-	TSC_hg19_v1_chr6_+_53659294 AK021896	159964	+	TSC_hg19_v1_chr6_+_53659776 BC003193 NM_018214	160423	+	AK304288|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##NM_001197115|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##NM_001498|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AK313480|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AB262176|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC022487|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EF633513|KLHL31|401265|kelch-like 31 (Drosophila)##NM_001003760|KLHL31|401265|kelch-like 31 (Drosophila)##AK021896|LRRC1|55227|leucine rich repeat containing 1##BC003193|LRRC1|55227|leucine rich repeat containing 1##NM_018214|LRRC1|55227|leucine rich repeat containing 1	0.989188	0.0	denovo_WM_7:34:0.579
chr15	77295964	77296082	reg1010478.p1	5.204	+	TSC_hg19_v1_chr15_+_77287743 AK310072 AB451310 AB451440 AF038602 AF038603 DQ891779 DQ894963 AB528365	-8196	+	AK304052 U94778 AK316220 TSC_hg19_v1_chr15_+_77287720 AK298733	-8317	+	TSC_hg19_v1_chr15_+_77287465 AK309856 NM_003978 AK310126 BC008602	-8533	+	TSC_hg19_v1_chr15_-_77363389 AF054840 CU674348 AB529127 AF133423 AK293677 AK001310 AK001305 BC004280 BC009248 AK075336 AK075482 AK095520 AK298157	67263	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	67460	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	67521	-	AK310072|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451310|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451440|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038603|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ891779|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ894963|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK304052|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##U94778|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK316220|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK298733|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK309856|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##NM_003978|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310126|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##BC008602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF054840|TSPAN3|10099|tetraspanin 3##AF133423|TSPAN3|10099|tetraspanin 3##AK293677|TSPAN3|10099|tetraspanin 3##AK001310|TSPAN3|10099|tetraspanin 3##AK001305|TSPAN3|10099|tetraspanin 3##BC004280|TSPAN3|10099|tetraspanin 3##BC009248|TSPAN3|10099|tetraspanin 3##AK075336|TSPAN3|10099|tetraspanin 3##AK075482|TSPAN3|10099|tetraspanin 3##AK298157|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3	0.981476	0.0	denovo_WM_7:-18:0.873
chr17	2672450	2672553	reg1010532.p2	5.204	+	NM_015229 TSC_hg19_v1_chr17_-_2615039	-57514	-	TSC_hg19_v1_chr17_+_2497263 BX538346 AK313078 L13385 BC064638	-175243	+	TSC_hg19_v1_chr17_+_2496944 NM_000430 L13386	-175531	+	AK124640 TSC_hg19_v1_chr17_+_2680496	7922	+	AJ628446 AJ628447 NM_001100398 NM_015085 TSC_hg19_v1_chr17_+_2699761 CR627427 BC140870 BC140871	27252	+	BC106876 NM_014566 AB529301	294426	-	NM_015229|KIAA0664|23277|KIAA0664##BX538346|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AK313078|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13385|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BC064638|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##NM_000430|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13386|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AK124640|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628446|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628447|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_001100398|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015085|RAP1GAP2|23108|RAP1 GTPase activating protein 2##CR627427|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140870|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140871|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC106876|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##NM_014566|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5	1.993548	0.0	
chr1	150895235	150895412	reg1008631.p2	5.203	+	TSC_hg19_v1_chr1_-_150849221 BC028362 AK293027 NM_001197325 NM_001668 NM_178427	-46092	-	TSC_hg19_v1_chr1_-_150849187 BC060838 AK290177 AL834279 AK313780	-46146	-	TSC_hg19_v1_chr1_-_150849073 AK315812 AK291705 AF001307 M69238 AK223459	-46237	-	NM_001145415 NM_001243491 NM_012432 TSC_hg19_v1_chr1_+_150898838 AK302461 AK308335 BC028671 D31891 BC009362	3546	+	TSC_hg19_v1_chr1_-_150947141 BC010032	51815	-	AK290989 TSC_hg19_v1_chr1_-_150947185 BC001357	51846	-	BC028362|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK293027|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_001197325|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_001668|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_178427|ARNT|405|aryl hydrocarbon receptor nuclear translocator##BC060838|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK290177|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AL834279|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK313780|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK315812|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK291705|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AF001307|ARNT|405|aryl hydrocarbon receptor nuclear translocator##M69238|ARNT|405|aryl hydrocarbon receptor nuclear translocator##AK223459|ARNT|405|aryl hydrocarbon receptor nuclear translocator##NM_001145415|SETDB1|9869|SET domain, bifurcated 1##NM_001243491|SETDB1|9869|SET domain, bifurcated 1##NM_012432|SETDB1|9869|SET domain, bifurcated 1##AK302461|SETDB1|9869|SET domain, bifurcated 1##AK308335|SETDB1|9869|SET domain, bifurcated 1##BC028671|SETDB1|9869|SET domain, bifurcated 1##D31891|SETDB1|9869|SET domain, bifurcated 1##BC009362|SETDB1|9869|SET domain, bifurcated 1##BC010032|CERS2|29956|ceramide synthase 2##AK290989|CERS2|29956|ceramide synthase 2##BC001357|CERS2|29956|ceramide synthase 2	0.999357	0.0	denovo_WM_7:24:0.950
chr1	175111642	175111769	reg1008752.p2	5.203	+	AK127044 NM_022093	-74712	+	TSC_hg19_v1_chr1_-_174992572 BC009788 AK310915 AK311759 AL049705 NM_022100	-119134	-	TSC_hg19_v1_chr1_+_174969165 BC005865 AK294042 AF314752 BC022352 AL035305 AF057356 BC067823 BC078151 AF275803 AY423723	-142495	+	D25539 BC032361 BC111699 BC050374 BC008952 BC020789 AL049799 AK292691 NM_001162895 NM_014656 AL049800 NM_001162893 NM_001162894	50325	-	AK295823 TSC_hg19_v1_chr1_-_175712727 NM_003285	601005	-	AF508940 AY509921 TSC_hg19_v1_chr1_-_176176215	1064460	-	AK127044|TNN|63923|tenascin N##NM_022093|TNN|63923|tenascin N##BC009788|MRPS14|63931|mitochondrial ribosomal protein S14##AK310915|MRPS14|63931|mitochondrial ribosomal protein S14##AK311759|MRPS14|63931|mitochondrial ribosomal protein S14##AL049705|MRPS14|63931|mitochondrial ribosomal protein S14##NM_022100|MRPS14|63931|mitochondrial ribosomal protein S14##AK294042|CACYBP|27101|calcyclin binding protein##AF314752|CACYBP|27101|calcyclin binding protein##BC022352|CACYBP|27101|calcyclin binding protein##AL035305|CACYBP|27101|calcyclin binding protein##AF057356|CACYBP|27101|calcyclin binding protein##BC067823|CACYBP|27101|calcyclin binding protein##BC078151|CACYBP|27101|calcyclin binding protein##AF275803|CACYBP|27101|calcyclin binding protein##AY423723|CACYBP|27101|calcyclin binding protein##D25539|KIAA0040|9674|KIAA0040##BC032361|KIAA0040|9674|KIAA0040##BC111699|KIAA0040|9674|KIAA0040##BC050374|KIAA0040|9674|KIAA0040##BC020789|KIAA0040|9674|KIAA0040##AL049799|KIAA0040|9674|KIAA0040##AK292691|KIAA0040|9674|KIAA0040##NM_001162895|KIAA0040|9674|KIAA0040##NM_014656|KIAA0040|9674|KIAA0040##AL049800|KIAA0040|9674|KIAA0040##NM_001162893|KIAA0040|9674|KIAA0040##NM_001162894|KIAA0040|9674|KIAA0040##AK295823|TNR|7143|tenascin R (restrictin, janusin)##NM_003285|TNR|7143|tenascin R (restrictin, janusin)##AF508940|RFWD2|64326|ring finger and WD repeat domain 2##AY509921|RFWD2|64326|ring finger and WD repeat domain 2	0.985776	0.0	denovo_WM_7:57:0.949
chr20	43599994	43600174	reg1002363.p1	5.203	+	AK315238 U60207 TSC_hg19_v1_chr20_+_43595176 BC058916 BC039023 U18297	-4893	+	NM_006282 TSC_hg19_v1_chr20_+_43595152 AB209315 BC029511 AK309169 AK225326 BC005231 BC015332 BC038850 CR933633 BC093768	-4938	+	AB590243 BT020008 BT020009 CR456765 CU677113 DQ891151 EU176561 TSC_hg19_v1_chr20_-_43589038 AK129538 U58970 BC014907 AK222952 BC001763 BC007423 AK000594 BC006573 AB085681 AK302128 AK307655 NM_006809	-11030	-	BC132957 BC132959 BC144234 TSC_hg19_v1_chr20_-_43729732 AK289735 NM_002251	129605	-	CU691668 AY038181 BC039173 AY358822 NM_145652	143683	-	AB464352 AY358678 AY037803 NM_080869	153012	-	AK315238|STK4|6789|serine/threonine kinase 4##U60207|STK4|6789|serine/threonine kinase 4##BC058916|STK4|6789|serine/threonine kinase 4##BC039023|STK4|6789|serine/threonine kinase 4##U18297|STK4|6789|serine/threonine kinase 4##NM_006282|STK4|6789|serine/threonine kinase 4##AB209315|STK4|6789|serine/threonine kinase 4##BC029511|STK4|6789|serine/threonine kinase 4##AK309169|STK4|6789|serine/threonine kinase 4##AK225326|STK4|6789|serine/threonine kinase 4##BC005231|STK4|6789|serine/threonine kinase 4##BC015332|STK4|6789|serine/threonine kinase 4##BC038850|STK4|6789|serine/threonine kinase 4##CR933633|STK4|6789|serine/threonine kinase 4##BC093768|STK4|6789|serine/threonine kinase 4##BT020008|TOMM34|10953|translocase of outer mitochondrial membrane 34##BT020009|TOMM34|10953|translocase of outer mitochondrial membrane 34##CR456765|TOMM34|10953|translocase of outer mitochondrial membrane 34##DQ891151|TOMM34|10953|translocase of outer mitochondrial membrane 34##EU176561|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK129538|TOMM34|10953|translocase of outer mitochondrial membrane 34##U58970|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC014907|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK222952|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC001763|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC007423|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK000594|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC006573|TOMM34|10953|translocase of outer mitochondrial membrane 34##AB085681|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK302128|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK307655|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006809|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC132957|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC132959|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC144234|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AK289735|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##NM_002251|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AY038181|WFDC5|149708|WAP four-disulfide core domain 5##BC039173|WFDC5|149708|WAP four-disulfide core domain 5##AY358822|WFDC5|149708|WAP four-disulfide core domain 5##NM_145652|WFDC5|149708|WAP four-disulfide core domain 5##AY358678|WFDC12|128488|WAP four-disulfide core domain 12##AY037803|WFDC12|128488|WAP four-disulfide core domain 12##NM_080869|WFDC12|128488|WAP four-disulfide core domain 12	0.0	0.0	
chr15	59560865	59560978	reg1009226.p1	5.201	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-61869	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-163550	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-201843	+	AB290177 TSC_hg19_v1_chr15_-_59665055	104133	-	TSC_hg19_v1_chr15_-_59665065 AK291688	104145	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	104149	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	0.9961	0.0	
chr6	6814677	6814822	reg1011063.p1	5.201	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-89588	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-225799	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-493839	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	293077	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	293286	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	293474	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	0.979657	0.0	denovo_WM_7:-10:0.948
chr9	35815544	35815724	reg1006865.p1	5.201	+	TSC_hg19_v1_chr9_-_35815040 NM_032593	-579	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	-622	-	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	-3434	-	BC146808 BX648702 NM_001012446	13101	-	TSC_hg19_v1_chr9_+_35829262 NM_016446 BC043384 NM_001042589 AF188239	13609	+	TSC_hg19_v1_chr9_+_35829375 BC064951 NM_001042590 BC082765	13844	+	NM_032593|HINT2|84681|histidine triad nucleotide binding protein 2##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##BC146808|C9orf128|392307|chromosome 9 open reading frame 128##BX648702|C9orf128|392307|chromosome 9 open reading frame 128##NM_001012446|C9orf128|392307|chromosome 9 open reading frame 128##NM_016446|TMEM8B|51754|transmembrane protein 8B##BC043384|TMEM8B|51754|transmembrane protein 8B##NM_001042589|TMEM8B|51754|transmembrane protein 8B##AF188239|TMEM8B|51754|transmembrane protein 8B##BC064951|TMEM8B|51754|transmembrane protein 8B##NM_001042590|TMEM8B|51754|transmembrane protein 8B##BC082765|TMEM8B|51754|transmembrane protein 8B	0.024219	0.0	
chr10	14921844	14921997	reg1008734.p1	5.200	+	NM_001193424 NM_001193426 BC029360 TSC_hg19_v1_chr10_+_14920864 NM_001193425 NM_001193427 AK222565 AK225369 AK027067 CU688630 BC007754 NM_024670	-1081	+	TSC_hg19_v1_chr10_+_14880343 AF143723 AK292323 AB528152 AB587406	-41549	+	TSC_hg19_v1_chr10_+_14880335 AF112210 BC119690 BC119691	-41582	+	CU692508 TSC_hg19_v1_chr10_-_14996096 BC108276 AK022922 BC022254 AF395747 AF395748 AF395749 AF395750 AF395751 AF395752 AJ296101 BC009185 BX648858 AK021422 AK290598 AK307912 NM_001033855 NM_001033857 NM_001033858 NM_022487	74134	-	NM_001080836	79517	+	NM_001039702 NM_018324 BC050372 AK001844 AK001968	164007	+	NM_001193424|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193426|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC029360|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193425|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193427|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK222565|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK225369|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK027067|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC007754|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_024670|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AF143723|HSPA14|51182|heat shock 70kDa protein 14##AK292323|HSPA14|51182|heat shock 70kDa protein 14##AF112210|HSPA14|51182|heat shock 70kDa protein 14##BC119690|HSPA14|51182|heat shock 70kDa protein 14##BC119691|HSPA14|51182|heat shock 70kDa protein 14##BC108276|DCLRE1C|64421|DNA cross-link repair 1C##AK022922|DCLRE1C|64421|DNA cross-link repair 1C##BC022254|DCLRE1C|64421|DNA cross-link repair 1C##AF395747|DCLRE1C|64421|DNA cross-link repair 1C##AF395748|DCLRE1C|64421|DNA cross-link repair 1C##AF395749|DCLRE1C|64421|DNA cross-link repair 1C##AF395750|DCLRE1C|64421|DNA cross-link repair 1C##AF395751|DCLRE1C|64421|DNA cross-link repair 1C##AF395752|DCLRE1C|64421|DNA cross-link repair 1C##AJ296101|DCLRE1C|64421|DNA cross-link repair 1C##BC009185|DCLRE1C|64421|DNA cross-link repair 1C##BX648858|DCLRE1C|64421|DNA cross-link repair 1C##AK021422|DCLRE1C|64421|DNA cross-link repair 1C##AK290598|DCLRE1C|64421|DNA cross-link repair 1C##AK307912|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033855|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033857|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033858|DCLRE1C|64421|DNA cross-link repair 1C##NM_022487|DCLRE1C|64421|DNA cross-link repair 1C##NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase	1.154198	0.0	denovo_WM_7:7:0.739
chr17	46621694	46621851	reg1007410.p1	5.200	+	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	-13501	-	TSC_hg19_v1_chr17_-_46507604 BC039040	-114155	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	-114234	-	EU446481 BC074805 BC074806 X16665 NM_002145	561	-	NM_002146 AK027609	30056	-	TSC_hg19_v1_chr17_-_46655544 AL137449 BC049204 NM_024015	33871	-	BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##EU446481|HOXB2|3212|homeobox B2##BC074805|HOXB2|3212|homeobox B2##BC074806|HOXB2|3212|homeobox B2##X16665|HOXB2|3212|homeobox B2##NM_002145|HOXB2|3212|homeobox B2##NM_002146|HOXB3|3213|homeobox B3##AK027609|HOXB3|3213|homeobox B3##AL137449|HOXB4|3214|homeobox B4##BC049204|HOXB4|3214|homeobox B4##NM_024015|HOXB4|3214|homeobox B4	0.957892	0.0	denovo_WM_7:-70:0.913
chr20	5626410	5626526	reg1002390.p2	5.200	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-34881	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-331432	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-518773	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	104598	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	265658	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	304655	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.0	0.0	
chr16	68503922	68504057	reg1009804.p1	5.199	+	TSC_hg19_v1_chr16_-_68482409 AK289651 NM_018667 BC041828	-21508	-	TSC_hg19_v1_chr16_+_68344946 NM_001184824 NM_019023 AK001502 AK304605 AK056647	-159030	+	TSC_hg19_v1_chr16_-_68344850 BC013778 AK023353 AK091674 AK225712 AY078070 NM_032178	-159163	-	TSC_hg19_v1_chr16_+_68564035 BC040871	60044	+	BC140886 BC140887 TSC_hg19_v1_chr16_+_68573199 AX721106 AX721146 AK316251 AK074332 AK304152 BC040486	69209	+	NM_133458	69671	+	AK289651|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_018667|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC041828|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_001184824|PRMT7|54496|protein arginine methyltransferase 7##NM_019023|PRMT7|54496|protein arginine methyltransferase 7##AK001502|PRMT7|54496|protein arginine methyltransferase 7##AK304605|PRMT7|54496|protein arginine methyltransferase 7##AK056647|PRMT7|54496|protein arginine methyltransferase 7##BC013778|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK023353|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK091674|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK225712|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AY078070|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_032178|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##BC040871|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC140886|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC140887|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK316251|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK074332|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK304152|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC040486|ZFP90|146198|zinc finger protein 90 homolog (mouse)##NM_133458|ZFP90|146198|zinc finger protein 90 homolog (mouse)	2.012719	0.0	denovo_WM_7:-11:0.249	denovo_WM_7:-12:0.249	denovo_WM_7:-13:0.249	denovo_WM_7:-14:0.249	denovo_WM_7:-63:0.965
chr17	33391201	33391358	reg1001383.p3	5.199	+	TSC_hg19_v1_chr17_-_33390690 CR933651 NM_001017368	-562	-	TSC_hg19_v1_chr17_+_33307530 NM_002311 NM_013975 BC068005 AK300363 AK308407 U40671 X84740 BC009026	-83691	+	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	-102690	+	TSC_hg19_v1_chr17_-_33416298 AK093112 AX747930 BC028424	25032	-	AB464124 DQ892318 DQ895520 BC002723 AB013341 AB016223 AB016224 AB016225 Y15572 AF034956 BC014422 TSC_hg19_v1_chr17_-_33446836 AK296241 BX647297 AK301249	55466	-	TSC_hg19_v1_chr17_-_33446880 NM_001142571 NM_002878 NM_133629	55596	-	CR933651|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_001017368|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_002311|LIG3|3980|ligase III, DNA, ATP-dependent##NM_013975|LIG3|3980|ligase III, DNA, ATP-dependent##BC068005|LIG3|3980|ligase III, DNA, ATP-dependent##AK300363|LIG3|3980|ligase III, DNA, ATP-dependent##AK308407|LIG3|3980|ligase III, DNA, ATP-dependent##U40671|LIG3|3980|ligase III, DNA, ATP-dependent##X84740|LIG3|3980|ligase III, DNA, ATP-dependent##BC009026|LIG3|3980|ligase III, DNA, ATP-dependent##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830##AK093112|RFFL|117584|ring finger and FYVE-like domain containing 1##BC028424|RFFL|117584|ring finger and FYVE-like domain containing 1##DQ892318|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##DQ895520|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC002723|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB013341|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016223|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016224|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016225|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##Y15572|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AF034956|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC014422|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK296241|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BX647297|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK301249|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_001142571|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_002878|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_133629|RAD51D|5892|RAD51 homolog D (S. cerevisiae)	0.567051	0.0	denovo_WM_7:34:0.221	denovo_WM_7:35:0.217
chr3	73135292	73135407	reg1008633.p1	5.199	+	BC051316 BC064501 NM_018029	-24540	+	TSC_hg19_v1_chr3_+_73046081 AF327345 NM_174907 BC128136 BC128137	-89229	+	TSC_hg19_v1_chr3_+_73045984 BC110889	-89358	+	AB384112 BC014432 BC150623 AB029018 BC152417 NM_015009 TSC_hg19_v1_chr3_-_73674093	538689	-	AB384611 BC150608 NM_020872	1434953	-	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	2348800	-	BC051316|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC064501|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##NM_018029|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##AF327345|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##NM_174907|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128136|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128137|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC014432|PDZRN3|23024|PDZ domain containing ring finger 3##BC150623|PDZRN3|23024|PDZ domain containing ring finger 3##AB029018|PDZRN3|23024|PDZ domain containing ring finger 3##BC152417|PDZRN3|23024|PDZ domain containing ring finger 3##NM_015009|PDZRN3|23024|PDZ domain containing ring finger 3##BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene	0.278115	0.966579	CTCF.p2:-6:0.967
chr4	83995302	83995450	reg1009195.p1	5.199	+	NM_016129 AK001148 TSC_hg19_v1_chr4_+_83956368 AK024005 BC093007 AK223178 BC004302 BC009292 AB587420 AF100757 AK001210	-39052	+	TSC_hg19_v1_chr4_-_83934095 AK292769 NM_001115007	-61348	-	AB111889 BX640657 TSC_hg19_v1_chr4_-_83931982 BX640966 NM_001115008 NM_194282	-63382	-	BC012205 NM_001130716	35627	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	40515	-	TSC_hg19_v1_chr4_-_84035912 AK000140 NM_001130715 NM_016619	40551	-	NM_016129|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001148|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK024005|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC093007|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK223178|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC004302|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC009292|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AF100757|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001210|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK292769|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115007|LIN54|132660|lin-54 homolog (C. elegans)##AB111889|LIN54|132660|lin-54 homolog (C. elegans)##BX640657|LIN54|132660|lin-54 homolog (C. elegans)##BX640966|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115008|LIN54|132660|lin-54 homolog (C. elegans)##NM_194282|LIN54|132660|lin-54 homolog (C. elegans)##BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8##AK000140|PLAC8|51316|placenta-specific 8##NM_001130715|PLAC8|51316|placenta-specific 8##NM_016619|PLAC8|51316|placenta-specific 8	0.0	0.983316	CTCF.p2:-26:0.983
chr8	62752573	62752667	reg1007278.p1	5.199	+	TSC_hg19_v1_chr8_-_62627167 NM_001164754 NM_001164755 NM_001164756 NM_004318 NM_032466	-125431	-	TSC_hg19_v1_chr8_-_62627152 BC015518 BC025236 AK298577	-125482	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	-125602	-	TSC_hg19_v1_chr8_+_63161185 AK299689	408586	+	TSC_hg19_v1_chr8_+_63161499 AK096949 NM_173688 AX721226 AB463913	408944	+	AK290450 TSC_hg19_v1_chr8_-_63951364 AK301094 U55206 BC025025	1198778	-	NM_001164754|ASPH|444|aspartate beta-hydroxylase##NM_001164755|ASPH|444|aspartate beta-hydroxylase##NM_001164756|ASPH|444|aspartate beta-hydroxylase##NM_004318|ASPH|444|aspartate beta-hydroxylase##NM_032466|ASPH|444|aspartate beta-hydroxylase##BC015518|ASPH|444|aspartate beta-hydroxylase##BC025236|ASPH|444|aspartate beta-hydroxylase##AK298577|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase##AK299689|NKAIN3|286183|Na+/K+ transporting ATPase interacting 3##AK096949|NKAIN3|286183|Na+/K+ transporting ATPase interacting 3##NM_173688|NKAIN3|286183|Na+/K+ transporting ATPase interacting 3##AK290450|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##AK301094|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##U55206|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)##BC025025|GGH|8836|gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)	0.0	0.0	
chr10	11251749	11251929	reg1002885.p2	5.198	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-44347	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-44393	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-44414	+	NM_001080491	322434	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	401797	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	532559	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	0.091284	0.0	
chr16	28503345	28503486	reg1000327.p1	5.198	+	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	-175	-	BC157842 AK292155 NM_001199142	-65697	-	AK055366 AK299421 AK303790 AK304500 TSC_hg19_v1_chr16_-_28415162 AK301233 AK301183 NM_001099661 BC107692 NM_001037808 NM_003752	-88258	-	NM_001042432	207	-	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	2547	+	AY099296 CU687548 BC062422 NM_145659	14727	-	AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK055366|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK299421|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK303790|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK304500|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301233|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301183|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001099661|EIF3CL|728689|eukaryotic translation initiation factor 3, subunit C-like##BC107692|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001037808|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_003752|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor##AY099296|IL27|246778|interleukin 27##BC062422|IL27|246778|interleukin 27##NM_145659|IL27|246778|interleukin 27	0.0	0.0	
chr5	80809944	80810071	reg1009367.p1	5.198	+	BC075011 BC075010 AK122960 AB078619 BC089437 NM_130767 TSC_hg19_v1_chr5_-_80690052	-120005	-	NM_001131035 NM_001131036 NM_032280 AL512712 TSC_hg19_v1_chr5_+_80597439 BC032736 AK314160 BC022799 BC014841	-212568	+	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	-212635	-	TSC_hg19_v1_chr5_-_81046929 AB528651 CU677799 DQ891620 DQ894812 EU176592 EU831646 EU831730 AK293544 AK074537 AK294864 AK297494 AF161465 AF077048 AK299858 AK312337 CR936787 AL080076 BC017020	236892	-	TSC_hg19_v1_chr5_-_81046990 NM_012446	237101	-	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	457838	+	BC075011|ACOT12|134526|acyl-CoA thioesterase 12##BC075010|ACOT12|134526|acyl-CoA thioesterase 12##AK122960|ACOT12|134526|acyl-CoA thioesterase 12##AB078619|ACOT12|134526|acyl-CoA thioesterase 12##BC089437|ACOT12|134526|acyl-CoA thioesterase 12##NM_130767|ACOT12|134526|acyl-CoA thioesterase 12##NM_001131035|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_001131036|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_032280|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AL512712|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC032736|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK314160|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC022799|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC014841|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067##DQ891620|SSBP2|23635|single-stranded DNA binding protein 2##DQ894812|SSBP2|23635|single-stranded DNA binding protein 2##EU176592|SSBP2|23635|single-stranded DNA binding protein 2##EU831646|SSBP2|23635|single-stranded DNA binding protein 2##EU831730|SSBP2|23635|single-stranded DNA binding protein 2##AK293544|SSBP2|23635|single-stranded DNA binding protein 2##AK074537|SSBP2|23635|single-stranded DNA binding protein 2##AK294864|SSBP2|23635|single-stranded DNA binding protein 2##AK297494|SSBP2|23635|single-stranded DNA binding protein 2##AF161465|SSBP2|23635|single-stranded DNA binding protein 2##AF077048|SSBP2|23635|single-stranded DNA binding protein 2##AK299858|SSBP2|23635|single-stranded DNA binding protein 2##AK312337|SSBP2|23635|single-stranded DNA binding protein 2##CR936787|SSBP2|23635|single-stranded DNA binding protein 2##AL080076|SSBP2|23635|single-stranded DNA binding protein 2##BC017020|SSBP2|23635|single-stranded DNA binding protein 2##NM_012446|SSBP2|23635|single-stranded DNA binding protein 2##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)	0.0	0.105633	
chr2	231899348	231899472	reg1001625.p1	5.197	+	NM_139073 AK093385 AX748090 BC036248 AK126086 BC047704 CU690472	-38518	+	BC032694 NM_005683	-109470	-	TSC_hg19_v1_chr2_+_231729704 AY049777 EU831609 EU831632 EU831696 EU832488 EU832568 AB003629 CR457208	-169688	+	TSC_hg19_v1_chr2_+_231902259 NM_001144994	2827	+	TSC_hg19_v1_chr2_+_231921588 NM_001191037 NM_002807 AK307415 BC094720	22167	+	TSC_hg19_v1_chr2_+_231921606 BC064398	22191	+	NM_139073|SPATA3|130560|spermatogenesis associated 3##AK093385|SPATA3|130560|spermatogenesis associated 3##BC036248|SPATA3|130560|spermatogenesis associated 3##AK126086|SPATA3|130560|spermatogenesis associated 3##BC047704|SPATA3|130560|spermatogenesis associated 3##BC032694|GPR55|9290|G protein-coupled receptor 55##NM_005683|GPR55|9290|G protein-coupled receptor 55##AY049777|ITM2C|81618|integral membrane protein 2C##EU831609|ITM2C|81618|integral membrane protein 2C##EU831632|ITM2C|81618|integral membrane protein 2C##EU831696|ITM2C|81618|integral membrane protein 2C##EU832488|ITM2C|81618|integral membrane protein 2C##EU832568|ITM2C|81618|integral membrane protein 2C##AB003629|ITM2C|81618|integral membrane protein 2C##CR457208|ITM2C|81618|integral membrane protein 2C##NM_001144994|C2orf72|257407|chromosome 2 open reading frame 72##NM_001191037|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##NM_002807|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307415|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC094720|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC064398|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.0	0.0	
chr9	114792433	114792570	reg1008910.p2	5.197	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-133034	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-133387	+	AL833535 NM_173521	-246726	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	145019	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	302786	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	303348	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.0	0.0	
chr14	73393929	73394061	reg1009030.p2	5.196	+	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	-860	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	-33187	-	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-994129	+	AK098542 AF311602 NM_178441	59662	-	AB046809 TSC_hg19_v1_chr14_-_73493815 AJ310569 AK027399 BC014902 BC053520 NM_021260	99836	-	TSC_hg19_v1_chr14_+_73525218 BC062440 NM_021239	131214	+	AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AB046809|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AJ310569|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AK027399|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC014902|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC053520|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_021260|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC062440|RBM25|58517|RNA binding motif protein 25##NM_021239|RBM25|58517|RNA binding motif protein 25	1.972906	0.0	denovo_WM_7:62:0.808	denovo_WM_7:77:0.872
chr17	30216326	30216506	reg1005851.p1	5.196	+	AF407672 AJ272196 TSC_hg19_v1_chr17_-_30186264 AK024772 BC012386 BC035483 NM_018405	-30145	-	TSC_hg19_v1_chr17_+_29815032 AK097424	-401355	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	-497552	+	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	12250	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	12315	-	TSC_hg19_v1_chr17_-_30228769 AK299806	12348	-	AF407672|C17orf79|55352|chromosome 17 open reading frame 79##AJ272196|C17orf79|55352|chromosome 17 open reading frame 79##AK024772|C17orf79|55352|chromosome 17 open reading frame 79##BC012386|C17orf79|55352|chromosome 17 open reading frame 79##BC035483|C17orf79|55352|chromosome 17 open reading frame 79##NM_018405|C17orf79|55352|chromosome 17 open reading frame 79##AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)	0.284698	0.0	
chr19	44263214	44263340	reg1008705.p1	5.196	+	TSC_hg19_v1_chr19_-_44259117 NM_019108	-4149	-	TSC_hg19_v1_chr19_-_44259074 AK022948	-4184	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	-4257	-	AB128983 AB128984 AB128985 AF000972 AF022150 BT007426 CU677271 DQ891493 DQ894684 BC015337 AF395661 TSC_hg19_v1_chr19_-_44285137 AF033021	21798	-	TSC_hg19_v1_chr19_-_44285437 AF022797 NM_002250	22163	-	CU691254 AY358719 BC057816 AK301693 NM_001031749	43291	-	NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB128983|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128984|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128985|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF000972|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022150|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BT007426|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ891493|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ894684|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BC015337|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF395661|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF033021|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022797|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##NM_002250|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AY358719|LYPD5|284348|LY6/PLAUR domain containing 5##BC057816|LYPD5|284348|LY6/PLAUR domain containing 5##AK301693|LYPD5|284348|LY6/PLAUR domain containing 5##NM_001031749|LYPD5|284348|LY6/PLAUR domain containing 5	0.998338	0.0	denovo_WM_7:-59:0.457	denovo_WM_7:-60:0.457
chr2	38615795	38615905	reg1008872.p1	5.196	+	TSC_hg19_v1_chr2_-_38604430 NM_001135673 NM_022374	-11419	-	TSC_hg19_v1_chr2_-_38604411 BC053508 AK026946 AK225190 AK303985 AK308894	-11446	-	AK316179 TSC_hg19_v1_chr2_-_38525609	-90281	-	TSC_hg19_v1_chr2_-_38829619 CU675994	213841	-	TSC_hg19_v1_chr2_-_38830012 AY236962	214142	-	TSC_hg19_v1_chr2_-_38830065 AY236963 BC017480 AK291462	214190	-	NM_001135673|ATL2|64225|atlastin GTPase 2##NM_022374|ATL2|64225|atlastin GTPase 2##BC053508|ATL2|64225|atlastin GTPase 2##AK026946|ATL2|64225|atlastin GTPase 2##AK225190|ATL2|64225|atlastin GTPase 2##AK303985|ATL2|64225|atlastin GTPase 2##AK308894|ATL2|64225|atlastin GTPase 2##AK316179|ATL2|64225|atlastin GTPase 2##AY236962|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AY236963|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##BC017480|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK291462|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like	0.989964	0.0	denovo_WM_7:-59:0.234	denovo_WM_7:-60:0.234	denovo_WM_7:-61:0.234	denovo_WM_7:-62:0.234
chr3	129457085	129457251	reg1009710.p2	5.196	+	TSC_hg19_v1_chr3_-_129325518 NM_015103 AB014520 AY116661 BC150280	-131729	-	AY158091 NM_153833	-195112	+	NM_000539 BX537381 BC112104 BC112106 AB464154 AM392780	-209641	+	AK291448 BC039859 NM_001017395	142142	-	TSC_hg19_v1_chr3_-_129612445 NM_001128224	155250	-	TSC_hg19_v1_chr3_+_129612705 AK127796	155550	+	NM_015103|PLXND1|23129|plexin D1##AB014520|PLXND1|23129|plexin D1##AY116661|PLXND1|23129|plexin D1##BC150280|PLXND1|23129|plexin D1##AY158091|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_153833|H1FOO|132243|H1 histone family, member O, oocyte-specific##NM_000539|RHO|6010|rhodopsin##BX537381|RHO|6010|rhodopsin##BC112104|RHO|6010|rhodopsin##BC112106|RHO|6010|rhodopsin##AM392780|RHO|6010|rhodopsin##AK291448|TMCC1|23023|transmembrane and coiled-coil domain family 1##BC039859|TMCC1|23023|transmembrane and coiled-coil domain family 1##NM_001017395|TMCC1|23023|transmembrane and coiled-coil domain family 1##NM_001128224|TMCC1|23023|transmembrane and coiled-coil domain family 1##AK127796|LOC100507032|100507032|uncharacterized LOC100507032	1.356154	0.0	denovo_WM_7:-20:0.226	denovo_WM_7:-41:0.307	denovo_WM_7:-42:0.307	denovo_WM_7:-43:0.314
chr16	29885775	29885928	reg1009641.p2	5.195	+	AK094468 TSC_hg19_v1_chr16_-_29874513 BC001444 AK222676 AK290632 AF014807 AK300805 AK131349 AK314544 NM_006319	-11377	-	TSC_hg19_v1_chr16_+_29831782 AK301130 AK310168 AK298238 AJ291366 AJ291367 AK293302 AK302052 BC015623	-54071	+	NM_005115 NM_017458 TSC_hg19_v1_chr16_+_29831736	-54126	+	CU674276 EU176661 BC000567 AJ245820 AJ245821 AJ245822 AK293675 TSC_hg19_v1_chr16_-_29910597 AY358404 AK299103 NM_001114099 NM_001114100 NM_001243332 NM_001243333 NM_012410 NM_201575	24623	-	NM_181718 BC126319 BC126321 BC144152 HQ258402 BC085011 BC009033	26431	+	AB464051 DQ891555 DQ894742 CU690312 TSC_hg19_v1_chr16_-_29937488 AF401315 AY027918 AF289573	51585	-	AK094468|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##BC001444|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AK222676|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AK290632|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AF014807|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AK300805|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AK131349|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AK314544|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##NM_006319|CDIPT|10423|CDP-diacylglycerol--inositol 3-phosphatidyltransferase##AK301130|MVP|9961|major vault protein##AK310168|MVP|9961|major vault protein##AK298238|MVP|9961|major vault protein##AJ291366|MVP|9961|major vault protein##AJ291367|MVP|9961|major vault protein##AK293302|MVP|9961|major vault protein##AK302052|MVP|9961|major vault protein##BC015623|MVP|9961|major vault protein##NM_005115|MVP|9961|major vault protein##NM_017458|MVP|9961|major vault protein##EU176661|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##BC000567|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##AJ245820|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##AJ245821|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##AJ245822|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##AK293675|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##AY358404|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##AK299103|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_001114099|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_001114100|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_001243332|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_001243333|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_012410|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_201575|SEZ6L2|26470|seizure related 6 homolog (mouse)-like 2##NM_181718|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##BC126319|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##BC126321|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##BC144152|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##HQ258402|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##BC085011|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##BC009033|ASPHD1|253982|aspartate beta-hydroxylase domain containing 1##DQ891555|KCTD13|253980|potassium channel tetramerisation domain containing 13##DQ894742|KCTD13|253980|potassium channel tetramerisation domain containing 13##AF401315|KCTD13|253980|potassium channel tetramerisation domain containing 13##AY027918|KCTD13|253980|potassium channel tetramerisation domain containing 13##AF289573|KCTD13|253980|potassium channel tetramerisation domain containing 13	1.984435	0.0	
chr17	28927090	28927174	reg1006389.p2	5.195	+	BC096718 BC098126 BC098273 NM_015594	-40549	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-122699	+	AK316409 NM_001199775 AK302878	-219617	+	TSC_hg19_v1_chr17_+_29058664 BC047718	131556	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	224543	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	224631	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	0.0	0.0	
chr19	7760767	7760900	reg1008912.p2	5.195	+	TSC_hg19_v1_chr19_+_7745742 BC042161 NM_174894 NM_001042461 BC022836	-15078	+	NM_001042462 TSC_hg19_v1_chr19_+_7745726 AK292001	-15116	+	TSC_hg19_v1_chr19_+_7741975 BC104796 BC104798 NM_174918 AF461156 BC035847	-18866	+	TSC_hg19_v1_chr19_-_7764328 NM_001207019	3493	-	BC064417 BC062591 AK223207 BC014108 M14766 TSC_hg19_v1_chr19_-_7767004 AK310707 AK310071 M15059 NM_001220500 NM_002002 X04772	6171	-	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	36183	-	BC042161|TRAPPC5|126003|trafficking protein particle complex 5##NM_174894|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042461|TRAPPC5|126003|trafficking protein particle complex 5##BC022836|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042462|TRAPPC5|126003|trafficking protein particle complex 5##AK292001|TRAPPC5|126003|trafficking protein particle complex 5##BC104796|C19orf59|199675|chromosome 19 open reading frame 59##BC104798|C19orf59|199675|chromosome 19 open reading frame 59##NM_174918|C19orf59|199675|chromosome 19 open reading frame 59##AF461156|C19orf59|199675|chromosome 19 open reading frame 59##BC035847|C19orf59|199675|chromosome 19 open reading frame 59##NM_001207019|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC064417|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC062591|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK223207|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC014108|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M14766|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310707|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310071|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M15059|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_001220500|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_002002|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##X04772|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G	0.995607	0.0	
chr20	52486040	52486220	reg1006905.p1	5.195	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-275331	-	AF041259 NM_006526	-286495	-	AK302570 NM_001193421	-684309	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	200932	-	AK315220 NM_003657	201173	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	304390	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.99811	0.0	
chr1	210567863	210568032	reg1008603.p2	5.194	+	NM_001170580 BC051191	-65306	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-65682	+	NM_001122834 NM_001170564 AK297193	-66351	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	739438	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	864761	+	TSC_hg19_v1_chr1_+_211432726 AK131312	864780	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.0	0.0	
chr13	21635989	21636091	reg1008929.p2	5.194	+	TSC_hg19_v1_chr13_-_21635719 NM_014572	-324	-	TSC_hg19_v1_chr13_-_21635685 BC127671 AF207547 AB209897 BC071572	-375	-	TSC_hg19_v1_chr13_-_21476909 NM_022459	-159103	-	NM_005870 TSC_hg19_v1_chr13_+_21714679	78627	+	BC030836 TSC_hg19_v1_chr13_+_21714684	78647	+	TSC_hg19_v1_chr13_+_21714721 AF153608 U78303 AK311748 AY550970 U96915 AB464207 CR457035 CU689040 EU446760	78688	+	NM_014572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##BC127671|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AF207547|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AB209897|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##BC071572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##NM_022459|XPO4|64328|exportin 4##NM_005870|SAP18|10284|Sin3A-associated protein, 18kDa##BC030836|SAP18|10284|Sin3A-associated protein, 18kDa##AF153608|SAP18|10284|Sin3A-associated protein, 18kDa##U78303|SAP18|10284|Sin3A-associated protein, 18kDa##AK311748|SAP18|10284|Sin3A-associated protein, 18kDa##AY550970|SAP18|10284|Sin3A-associated protein, 18kDa##U96915|SAP18|10284|Sin3A-associated protein, 18kDa##CR457035|SAP18|10284|Sin3A-associated protein, 18kDa##EU446760|SAP18|10284|Sin3A-associated protein, 18kDa	0.989855	0.0	denovo_WM_7:0:0.781
chr2	98280590	98280710	reg1005547.p1	5.194	+	TSC_hg19_v1_chr2_-_98280591 NM_005735	-76	-	TSC_hg19_v1_chr2_-_98280472 CU678694 DQ893438 DQ896748 AB528334 BC006372 X82207 BC004374 BC010090	-220	-	TSC_hg19_v1_chr2_-_98275064 BC025274	-5570	-	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	49392	+	AB083211 NM_207519	70218	+	AK025852 TSC_hg19_v1_chr2_-_98408976	128272	-	NM_005735|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ893438|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ896748|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC006372|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##X82207|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC004374|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC010090|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC025274|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK025852|TMEM131|23505|transmembrane protein 131	0.0	0.0	
chr7	23510417	23510597	reg1002976.p2	5.194	+	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	-509	-	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	-828	-	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	-171542	+	TSC_hg19_v1_chr7_+_23530136 BC026177	19660	+	CU677835 DQ892442 DQ895653 AB528532 TSC_hg19_v1_chr7_-_23571604 BC069011 BC017094 U53209 AB097048 AK300565 AK311687 AK314801 AK300741 AK310719 AK298815 NM_013293	61057	-	TSC_hg19_v1_chr7_+_23637005 NM_138771 AK289911 AY358713 AX721042	126508	+	BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32##DQ892442|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##DQ895653|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC069011|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC017094|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##U53209|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AB097048|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300565|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK311687|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK314801|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300741|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK310719|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK298815|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_013293|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_138771|CCDC126|90693|coiled-coil domain containing 126##AK289911|CCDC126|90693|coiled-coil domain containing 126##AY358713|CCDC126|90693|coiled-coil domain containing 126	0.982358	0.0	denovo_WM_7:14:0.848
chr17	64190363	64190491	reg1009750.p2	5.193	+	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	-2246	-	BC029524 NM_001037325	-367767	-	CR933657 TSC_hg19_v1_chr17_-_63557767	-632659	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	35098	-	TSC_hg19_v1_chr17_+_64298733 BC053321	108323	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	108500	+	BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##CR933657|AXIN2|8313|axin 2##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC053321|PRKCA|5578|protein kinase C, alpha##NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha	0.990056	0.0	denovo_WM_7:-48:0.953
chr19	14130150	14130279	reg1011599.p2	5.193	+	BC049826 TSC_hg19_v1_chr19_-_14117133 AK309824 NM_002918	-13085	-	TSC_hg19_v1_chr19_-_14116878 X58964	-13300	-	AK027100 AK298489 NM_001146254 NM_001146255	-66017	-	BC140935 AB076563 AF447451 BC110069 NM_080864	8773	+	NM_004843	12047	+	TSC_hg19_v1_chr19_+_14142542 AF053004 AF106912	12300	+	BC049826|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK309824|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##NM_002918|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##X58964|RFX1|5989|regulatory factor X, 1 (influences HLA class II expression)##AK027100|PODNL1|79883|podocan-like 1##AK298489|PODNL1|79883|podocan-like 1##NM_001146254|PODNL1|79883|podocan-like 1##NM_001146255|PODNL1|79883|podocan-like 1##BC140935|RLN3|117579|relaxin 3##AB076563|RLN3|117579|relaxin 3##AF447451|RLN3|117579|relaxin 3##BC110069|RLN3|117579|relaxin 3##NM_080864|RLN3|117579|relaxin 3##NM_004843|IL27RA|9466|interleukin 27 receptor, alpha##AF053004|IL27RA|9466|interleukin 27 receptor, alpha##AF106912|IL27RA|9466|interleukin 27 receptor, alpha	0.0	0.0	
chr19	47395698	47395865	reg1005970.p1	5.193	+	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	-41650	-	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-104059	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-104508	-	AB051509 AF159851 BC131565 BC150257 NM_004491	26151	+	TSC_hg19_v1_chr19_+_47523068 BC039016	127295	+	AB054002 NM_002517 U77968	128430	+	BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1	0.996443	0.0	
chr3	114598235	114598382	reg1011410.p1	5.193	+	AK225788 NM_001164344 NM_001164345	-120188	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	-254514	-	BC029041 NM_001164347	-255256	-	BC090936 NM_001164343	191932	-	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	267806	-	NM_001130064 NM_002045	743842	+	AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20##BC029041|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164347|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43	0.0	0.0	
chr9	125813401	125813531	reg1011733.p1	5.193	+	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-16621	+	AK294531 AK299686 TSC_hg19_v1_chr9_+_125795928 AK313539	-17599	+	AK131449 TSC_hg19_v1_chr9_+_125703299 BC020609 NM_012197 AK022408 BC054492 AF161357 AJ011679	-110238	+	TSC_hg19_v1_chr9_-_125874882 AK025814	61433	-	TSC_hg19_v1_chr9_-_125941308 BC002693	127854	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	217354	-	BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AK294531|RABGAP1|23637|RAB GTPase activating protein 1##AK299686|GPR21|2844|G protein-coupled receptor 21##AK313539|GPR21|2844|G protein-coupled receptor 21##AK131449|RABGAP1|23637|RAB GTPase activating protein 1##BC020609|RABGAP1|23637|RAB GTPase activating protein 1##NM_012197|RABGAP1|23637|RAB GTPase activating protein 1##AK022408|RABGAP1|23637|RAB GTPase activating protein 1##BC054492|RABGAP1|23637|RAB GTPase activating protein 1##AF161357|RABGAP1|23637|RAB GTPase activating protein 1##AJ011679|RABGAP1|23637|RAB GTPase activating protein 1##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein	3.982436	0.0	denovo_WM_7:37:0.495	denovo_WM_7:38:0.297	denovo_WM_7:52:0.200	denovo_WM_7:53:0.299	denovo_WM_7:54:0.298	denovo_WM_7:-69:0.457	denovo_WM_7:69:0.299	denovo_WM_7:-70:0.457	denovo_WM_7:70:0.497
chr10	69539821	69539977	reg1008688.p2	5.192	+	AF091606 AK313882 NM_013266	-83962	-	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	-114503	-	NM_178011 BX640611 AY358315 BC111492	-854084	+	CR457184 AF176013 BC017018 AK289537 AF176012 NM_021800 NM_201262	57953	-	TSC_hg19_v1_chr10_+_69644413 AF083106 NM_012238 AF235040	104508	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	104893	+	AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##CR457184|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176013|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##BC017018|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AK289537|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176012|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_021800|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_201262|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF083106|SIRT1|23411|sirtuin 1##NM_012238|SIRT1|23411|sirtuin 1##AF235040|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1	0.0	0.99902	CTCF.p2:-36:0.999
chr1	38510202	38510355	reg1009110.p1	5.192	+	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-31848	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-31893	+	TSC_hg19_v1_chr1_-_38471187 BC014501 BC001351 BC011697 AK309179 AK290641 NM_001243878 NM_004468	-39045	-	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	2171	-	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	815108	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	828738	-	AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC014501|FHL3|2275|four and a half LIM domains 3##BC001351|FHL3|2275|four and a half LIM domains 3##BC011697|FHL3|2275|four and a half LIM domains 3##AK309179|FHL3|2275|four and a half LIM domains 3##AK290641|FHL3|2275|four and a half LIM domains 3##NM_001243878|FHL3|2275|four and a half LIM domains 3##NM_004468|FHL3|2275|four and a half LIM domains 3##L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein	0.995846	0.0	denovo_WM_7:0:0.249	denovo_WM_7:-1:0.249	denovo_WM_7:-2:0.249	denovo_WM_7:-3:0.249
chr19	8245901	8246031	reg1008875.p1	5.192	+	AB384635 AB053450 BC153882 NM_032447	-33591	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-128019	+	AK292662 NM_001201359 NM_005624	-128321	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	28282	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	127243	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	140291	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.995286	0.0	
chr3	196780226	196780333	reg1011488.p2	5.191	+	TSC_hg19_v1_chr3_-_196756689 NM_033316 NM_005929	-23577	-	BT007377 AB527337 M12154 BC093920 BC111947 BC143257 BC002623 BC001875 BC007550 BC053510 BC071910 TSC_hg19_v1_chr3_-_196756658 BC032752	-23656	-	BC032042 TSC_hg19_v1_chr3_+_196729798	-50469	+	AK294855 NM_001204387 NM_001204388	130722	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	244654	-	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	245195	-	NM_033316|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##NM_005929|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BT007377|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##M12154|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC093920|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC111947|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC143257|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC002623|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC001875|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC007550|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC053510|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC071910|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032752|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032042|MFI2-AS1|100507057|MFI2 antisense RNA 1 (non-protein coding)##AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)	0.985821	0.0	denovo_WM_7:16:0.871
chr3	32440799	32440958	reg1001078.p2	5.191	+	TSC_hg19_v1_chr3_+_32433370 BC010116 AY174113 DQ132881 AK308878	-7475	+	TSC_hg19_v1_chr3_+_32433162 AF479263 NM_138410 NM_181472 AL832450	-7709	+	TSC_hg19_v1_chr3_+_32280215 BC041390	-160659	+	CR457231 TSC_hg19_v1_chr3_-_32544290	103394	-	TSC_hg19_v1_chr3_-_32544335 AK000403	103455	-	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	103502	-	BC010116|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AY174113|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##DQ132881|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AK308878|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AF479263|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_138410|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_181472|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AL832450|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##BC041390|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6	0.0	0.0	
chr6	36856978	36857086	reg1010282.p1	5.191	+	NM_152734 AJ420498 TSC_hg19_v1_chr6_+_36853727 BC095423 AK172780 AK315984 BC105947 BC107489 BC105946 BX538108 AK300351 AY358637 BX647220 BC023605	-3322	+	NM_016059 TSC_hg19_v1_chr6_-_36842800	-14232	-	BC003048 AF151882 AY359032 TSC_hg19_v1_chr6_-_36842797	-14258	-	NM_001199159	59006	+	BC035634 NM_153370	65176	+	TSC_hg19_v1_chr6_-_36953911 BC006507 CU674346 CU691916 AF151822 AK303318 BC000702 BC040659 AF189289 AY947344	96750	-	NM_152734|C6orf89|221477|chromosome 6 open reading frame 89##AJ420498|C6orf89|221477|chromosome 6 open reading frame 89##BC095423|C6orf89|221477|chromosome 6 open reading frame 89##AK172780|C6orf89|221477|chromosome 6 open reading frame 89##AK315984|C6orf89|221477|chromosome 6 open reading frame 89##BC105947|C6orf89|221477|chromosome 6 open reading frame 89##BC107489|C6orf89|221477|chromosome 6 open reading frame 89##BC105946|C6orf89|221477|chromosome 6 open reading frame 89##BX538108|C6orf89|221477|chromosome 6 open reading frame 89##AK300351|C6orf89|221477|chromosome 6 open reading frame 89##AY358637|C6orf89|221477|chromosome 6 open reading frame 89##BX647220|C6orf89|221477|chromosome 6 open reading frame 89##BC023605|C6orf89|221477|chromosome 6 open reading frame 89##NM_016059|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##BC003048|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##AF151882|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##AY359032|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##NM_001199159|PI16|221476|peptidase inhibitor 16##BC035634|PI16|221476|peptidase inhibitor 16##NM_153370|PI16|221476|peptidase inhibitor 16##BC006507|MTCH1|23787|mitochondrial carrier 1##AF151822|MTCH1|23787|mitochondrial carrier 1##AK303318|MTCH1|23787|mitochondrial carrier 1##BC000702|MTCH1|23787|mitochondrial carrier 1##BC040659|MTCH1|23787|mitochondrial carrier 1##AF189289|MTCH1|23787|mitochondrial carrier 1##AY947344|MTCH1|23787|mitochondrial carrier 1	0.0	0.0	
chr11	121337449	121337595	reg1003416.p1	5.190	+	TSC_hg19_v1_chr11_+_121323112 AK309523	-14347	+	TSC_hg19_v1_chr11_+_121323026 NM_003105 Y08110 BC137171 AB463277	-14573	+	TSC_hg19_v1_chr11_+_121163523 BC050427 NM_001024956 BC012333	-173968	+	TSC_hg19_v1_chr11_+_121461071 AK294404	123576	+	BC130361 BC130363 AF303179 NM_001001786	649339	-	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	1189025	+	AK309523|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##NM_003105|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##Y08110|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC137171|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC050427|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_001024956|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##BC012333|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK294404|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC130361|BLID|414899|BH3-like motif containing, cell death inducer##BC130363|BLID|414899|BH3-like motif containing, cell death inducer##AF303179|BLID|414899|BH3-like motif containing, cell death inducer##NM_001001786|BLID|414899|BH3-like motif containing, cell death inducer##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B	0.0	0.0	
chr10	93010221	93010328	reg1010082.p1	5.189	+	TSC_hg19_v1_chr10_+_92980539 AL832496	-29740	+	TSC_hg19_v1_chr10_+_92980445 NM_032373	-29866	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	-87512	+	BC071762 TSC_hg19_v1_chr10_+_93170064	159784	+	TSC_hg19_v1_chr10_+_93170100 NM_173497 NM_182765 AK295723 AK094625 BC040187 EU832472 EU832551 BX537856	159907	+	AK299392 TSC_hg19_v1_chr10_-_93392761 BC012625	382487	-	AL832496|PCGF5|84333|polycomb group ring finger 5##NM_032373|PCGF5|84333|polycomb group ring finger 5##BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##NM_173497|HECTD2|143279|HECT domain containing 2##NM_182765|HECTD2|143279|HECT domain containing 2##AK295723|HECTD2|143279|HECT domain containing 2##AK094625|HECTD2|143279|HECT domain containing 2##BC040187|HECTD2|143279|HECT domain containing 2##EU832472|HECTD2|143279|HECT domain containing 2##EU832551|HECTD2|143279|HECT domain containing 2##BX537856|HECTD2|143279|HECT domain containing 2##AK299392|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C##BC012625|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C	0.99656	0.0	denovo_WM_7:-10:0.408	denovo_WM_7:-11:0.408
chr11	115261319	115261453	reg1010019.p1	5.189	+	AY309502 TSC_hg19_v1_chr11_-_115088658	-172738	-	NM_182495 AK057953 BC111797 TSC_hg19_v1_chr11_+_114549272 AB463625	-712138	+	AK000134 AK225236 TSC_hg19_v1_chr11_-_114466485 NM_001077639 NM_017678	-794908	-	TSC_hg19_v1_chr11_-_115375134 AB094146 CR457157 CU692354 AF132811 BC125102 BC125103 AY358334 AK075502 BC035930 AK315245 BC047021 NM_001098517 NM_014333	113794	-	TSC_hg19_v1_chr11_-_116643696 DQ892763 DQ896008 AK057832 AK225164 AK289635 AK291111 AK311068 BC006350 NM_001159736 NM_032725	1382312	-	AK301227 BT006642 CU678646 TSC_hg19_v1_chr11_-_116658720 BC004256 BC011929 BC012162 BC017380 AF019767 BC111028	1397329	-	AY309502|CADM1|23705|cell adhesion molecule 1##NM_182495|FAM55B|120406|family with sequence similarity 55, member B##AK057953|FAM55B|120406|family with sequence similarity 55, member B##BC111797|FAM55B|120406|family with sequence similarity 55, member B##AK000134|FAM55D|54827|family with sequence similarity 55, member D##AK225236|FAM55D|54827|family with sequence similarity 55, member D##NM_001077639|FAM55D|54827|family with sequence similarity 55, member D##NM_017678|FAM55D|54827|family with sequence similarity 55, member D##AB094146|CADM1|23705|cell adhesion molecule 1##CR457157|CADM1|23705|cell adhesion molecule 1##AF132811|CADM1|23705|cell adhesion molecule 1##BC125102|CADM1|23705|cell adhesion molecule 1##BC125103|CADM1|23705|cell adhesion molecule 1##AY358334|CADM1|23705|cell adhesion molecule 1##AK075502|CADM1|23705|cell adhesion molecule 1##BC035930|CADM1|23705|cell adhesion molecule 1##AK315245|CADM1|23705|cell adhesion molecule 1##BC047021|CADM1|23705|cell adhesion molecule 1##NM_001098517|CADM1|23705|cell adhesion molecule 1##NM_014333|CADM1|23705|cell adhesion molecule 1##DQ892763|BUD13|84811|BUD13 homolog (S. cerevisiae)##DQ896008|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK057832|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK225164|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK289635|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK291111|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK311068|BUD13|84811|BUD13 homolog (S. cerevisiae)##BC006350|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_001159736|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_032725|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK301227|ZNF259|8882|zinc finger protein 259##BT006642|ZNF259|8882|zinc finger protein 259##BC004256|ZNF259|8882|zinc finger protein 259##BC011929|ZNF259|8882|zinc finger protein 259##BC012162|ZNF259|8882|zinc finger protein 259##BC017380|ZNF259|8882|zinc finger protein 259##AF019767|ZNF259|8882|zinc finger protein 259##BC111028|ZNF259|8882|zinc finger protein 259	0.997906	0.0	denovo_WM_7:10:0.298	denovo_WM_7:11:0.298	denovo_WM_7:12:0.298
chr12	102220644	102220751	reg1008292.p1	5.189	+	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	-87478	-	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	-129075	+	AK296681 NM_002465 NM_206819 NM_206820 NM_206821 AK056587 AK292976 AK295727 AK303401 BC015187 BC030980 BC065720 TSC_hg19_v1_chr12_+_101988748 BC092418 X66276 X73114 AL831993 AL832000 AL832332 AL832350 AL832354 AL832456 BC117217 BC143495 BC143502 BC143503 BC143504 AL834249 BX649073 AB385254 AM392734 EU831907 EU832001	-231901	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	3889	-	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	50421	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	50761	+	AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##AK296681|MYBPC1|4604|myosin binding protein C, slow type##NM_002465|MYBPC1|4604|myosin binding protein C, slow type##NM_206819|MYBPC1|4604|myosin binding protein C, slow type##NM_206820|MYBPC1|4604|myosin binding protein C, slow type##NM_206821|MYBPC1|4604|myosin binding protein C, slow type##AK056587|MYBPC1|4604|myosin binding protein C, slow type##AK292976|MYBPC1|4604|myosin binding protein C, slow type##AK295727|MYBPC1|4604|myosin binding protein C, slow type##AK303401|MYBPC1|4604|myosin binding protein C, slow type##BC015187|MYBPC1|4604|myosin binding protein C, slow type##BC030980|MYBPC1|4604|myosin binding protein C, slow type##BC065720|MYBPC1|4604|myosin binding protein C, slow type##BC092418|MYBPC1|4604|myosin binding protein C, slow type##X66276|MYBPC1|4604|myosin binding protein C, slow type##X73114|MYBPC1|4604|myosin binding protein C, slow type##AL831993|MYBPC1|4604|myosin binding protein C, slow type##AL832000|MYBPC1|4604|myosin binding protein C, slow type##AL832332|MYBPC1|4604|myosin binding protein C, slow type##AL832350|MYBPC1|4604|myosin binding protein C, slow type##AL832354|MYBPC1|4604|myosin binding protein C, slow type##AL832456|MYBPC1|4604|myosin binding protein C, slow type##BC117217|MYBPC1|4604|myosin binding protein C, slow type##BC143495|MYBPC1|4604|myosin binding protein C, slow type##BC143502|MYBPC1|4604|myosin binding protein C, slow type##BC143503|MYBPC1|4604|myosin binding protein C, slow type##BC143504|MYBPC1|4604|myosin binding protein C, slow type##AL834249|MYBPC1|4604|myosin binding protein C, slow type##BX649073|MYBPC1|4604|myosin binding protein C, slow type##AM392734|MYBPC1|4604|myosin binding protein C, slow type##EU831907|MYBPC1|4604|myosin binding protein C, slow type##EU832001|MYBPC1|4604|myosin binding protein C, slow type##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1	1.977878	0.0	denovo_WM_7:36:0.748	denovo_WM_7:37:0.242	denovo_WM_7:51:0.374	denovo_WM_7:52:0.615
chr1	6837914	6838061	reg1008876.p1	5.189	+	TSC_hg19_v1_chr1_-_6761903 NM_018198	-76056	-	AF306695 TSC_hg19_v1_chr1_-_6761883	-76105	-	AL833841 BC008772 TSC_hg19_v1_chr1_-_6761875 CU675235 CU680804 BC006086 AK294539 AF306694 AK001599 BC014145 AY336749	-76130	-	TSC_hg19_v1_chr1_+_6845513 AB020640 BC151835 NM_001195563 NM_001242701 NM_015215 BC116457	7504	+	TSC_hg19_v1_chr1_+_7831355 BC005941 NM_004781 AK316558 BC007050 BC003570 U64520	993389	+	BC026102 TSC_hg19_v1_chr1_+_7844403 AK308303	1006422	+	NM_018198|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AF306695|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AL833841|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC008772|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC006086|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AK294539|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AF306694|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AK001599|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC014145|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AY336749|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AB020640|CAMTA1|23261|calmodulin binding transcription activator 1##BC151835|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001195563|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001242701|CAMTA1|23261|calmodulin binding transcription activator 1##NM_015215|CAMTA1|23261|calmodulin binding transcription activator 1##BC116457|CAMTA1|23261|calmodulin binding transcription activator 1##BC005941|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##NM_004781|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##AK316558|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC007050|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC003570|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##U64520|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC026102|PER3|8863|period homolog 3 (Drosophila)##AK308303|PER3|8863|period homolog 3 (Drosophila)	0.875799	0.0	denovo_WM_7:21:0.340	denovo_WM_7:22:0.508
chr17	17801080	17801231	reg1005029.p2	5.189	+	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	-60831	-	TSC_hg19_v1_chr17_-_17740301 U00968 BC063281	-60860	-	AB373959 TSC_hg19_v1_chr17_-_17726919 S66167 AK091131 AK293795 AK294800 AK297113	-74251	-	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	74586	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	75045	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	141248	-	BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1##U00968|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC063281|SREBF1|6720|sterol regulatory element binding transcription factor 1##AB373959|SREBF1|6720|sterol regulatory element binding transcription factor 1##S66167|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK091131|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK293795|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK294800|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK297113|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2	0.999494	0.0	
chr5	114915759	114915939	reg1006997.p2	5.189	+	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	-35286	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	-35492	-	AB587510 AJ580807 NM_001040440	-283501	-	BC109265 BC109266 NM_021649	22268	-	TSC_hg19_v1_chr5_-_114961697 AK074962	45843	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	45945	-	BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##AJ580807|CCDC112|153733|coiled-coil domain containing 112##NM_001040440|CCDC112|153733|coiled-coil domain containing 112##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7	0.0	0.0	
chr2	81899768	81899948	reg1007818.p1	5.188	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-1368015	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-1368133	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-1368333	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	2786512	-	AK296741 TSC_hg19_v1_chr2_-_84686396	2786537	-	NM_003849	2786727	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.0	0.0	
chr3	98257663	98257833	reg1008382.p2	5.188	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-6939	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-15882	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-15983	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	54671	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	193497	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	193839	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	1.764229	0.0	denovo_WM_7:1:0.468	denovo_WM_7:16:0.205	denovo_WM_7:17:0.211	denovo_WM_7:18:0.366
chr17	65167889	65168003	reg1009296.p2	5.187	+	NM_000727 L07738 AK313852 BC113486 BC113492 BC069493 HQ258641	-127235	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	-207057	+	BC101633 NM_145811 BC101607 AF361351 AF458898	-294526	+	D29677 AK310217 TSC_hg19_v1_chr17_-_65241302 BC130582 BC144083	73343	-	TSC_hg19_v1_chr17_-_65241313 NM_014877	73366	-	CU676364 AB384721 DQ892821 DQ896067 TSC_hg19_v1_chr17_-_65362658 AK222679 BC065826	194702	-	NM_000727|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##L07738|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##AK313852|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##BC113486|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##BC113492|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##BC069493|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##HQ258641|CACNG1|786|calcium channel, voltage-dependent, gamma subunit 1##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##D29677|HELZ|9931|helicase with zinc finger##AK310217|HELZ|9931|helicase with zinc finger##BC130582|HELZ|9931|helicase with zinc finger##BC144083|HELZ|9931|helicase with zinc finger##NM_014877|HELZ|9931|helicase with zinc finger##DQ892821|PSMD12|5718|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12##DQ896067|PSMD12|5718|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12##AK222679|PSMD12|5718|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12##BC065826|PSMD12|5718|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	0.985454	0.0	denovo_WM_7:10:0.471	denovo_WM_7:11:0.453
chr9	31303121	31303252	reg1006484.p2	5.187	+	AK056372 NM_152570	-2583884	-	AK057806 JN681271 NM_145005	-3729345	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	-3729715	-	TSC_hg19_v1_chr9_+_32384618 NM_002197 AF261088	1081404	+	TSC_hg19_v1_chr9_+_32384622 AK057904	1081441	+	TSC_hg19_v1_chr9_+_32384648 AK308752 Z11559	1081463	+	AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2##AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##NM_002197|ACO1|48|aconitase 1, soluble##AF261088|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble##AK308752|ACO1|48|aconitase 1, soluble##Z11559|ACO1|48|aconitase 1, soluble	0.998423	0.0	denovo_WM_7:-15:0.457	denovo_WM_7:-16:0.457
chr10	5895315	5895494	reg1006422.p3	5.186	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-39969	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-40138	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-122732	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	36452	-	TSC_hg19_v1_chr10_+_5932205 AK095343	36795	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	36807	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.999607	0.0	
chr10	92961513	92961693	reg1001800.p2	5.186	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	-38841	+	X83703 NM_014391	-280575	-	AB528537 DQ892852 DQ896099 AY903446 BC005191 AK290960 BC018667 TSC_hg19_v1_chr10_-_92680845	-280787	-	TSC_hg19_v1_chr10_+_92980445 NM_032373	18805	+	TSC_hg19_v1_chr10_+_92980539 AL832496	18931	+	BC071762 TSC_hg19_v1_chr10_+_93170064	208455	+	BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##X83703|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_014391|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ892852|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##DQ896099|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AY903446|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC005191|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##AK290960|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##BC018667|ANKRD1|27063|ankyrin repeat domain 1 (cardiac muscle)##NM_032373|PCGF5|84333|polycomb group ring finger 5##AL832496|PCGF5|84333|polycomb group ring finger 5	0.0	0.0	
chr11	118691685	118691865	reg1009741.p1	5.186	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-29841	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-29896	-	TSC_hg19_v1_chr11_-_118661860 BC026228	-29916	-	AK291512 NM_001716 BC110352 X68149 AB464488	62785	+	NM_032966 X68829	72325	+	AB094091 NM_182557	89837	-	NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC026228|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like	0.0	0.0	
chr16	87902006	87902126	reg1008486.p2	5.186	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-102496	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-102551	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-265356	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	1009	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	68081	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	83102	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.055417	0.0	
chr20	6464584	6464755	reg1011085.p2	5.186	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-360506	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-360792	-	TSC_hg19_v1_chr20_-_6103678 AK314394 BC040545 AF443278	-360995	-	BC069214 NM_001200	284075	+	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1456433	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1535631	-	AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AK314394|FERMT1|55612|fermitin family member 1##BC040545|FERMT1|55612|fermitin family member 1##AF443278|FERMT1|55612|fermitin family member 1##BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4	1.012375	0.0	
chr4	76655927	76656107	reg1010551.p1	5.186	+	TSC_hg19_v1_chr4_+_76649846 D86326 NM_003715 BC032654 AB590104 AM392946 AM393489 CU689466 DQ894066 EU176195	-6103	+	TSC_hg19_v1_chr4_+_76649814 AK314289	-6202	+	TSC_hg19_v1_chr4_+_76649761 BC016672 AL832010 BC006398	-6253	+	BX648754 AF023456 NM_006239	167610	-	TSC_hg19_v1_chr4_-_76862135 AB161353 AK309271 BC006388 BC011854 NM_001042402 NM_014435	206112	-	TSC_hg19_v1_chr4_-_76878561 AF132198	222544	-	D86326|USO1|8615|USO1 vesicle docking protein homolog (yeast)##NM_003715|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC032654|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AM392946|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AM393489|USO1|8615|USO1 vesicle docking protein homolog (yeast)##DQ894066|USO1|8615|USO1 vesicle docking protein homolog (yeast)##EU176195|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AK314289|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC016672|USO1|8615|USO1 vesicle docking protein homolog (yeast)##AL832010|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BC006398|USO1|8615|USO1 vesicle docking protein homolog (yeast)##BX648754|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##AF023456|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##NM_006239|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##AB161353|NAAA|27163|N-acylethanolamine acid amidase##AK309271|NAAA|27163|N-acylethanolamine acid amidase##BC006388|NAAA|27163|N-acylethanolamine acid amidase##BC011854|NAAA|27163|N-acylethanolamine acid amidase##NM_001042402|NAAA|27163|N-acylethanolamine acid amidase##NM_014435|NAAA|27163|N-acylethanolamine acid amidase##AF132198|SDAD1|55153|SDA1 domain containing 1	0.996729	0.0	denovo_WM_7:-9:0.470	denovo_WM_7:-10:0.527
chr5	73786688	73786868	reg1005843.p2	5.186	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-677428	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-864793	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-925196	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	149685	-	AK096578 NM_003633	150470	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	194230	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	0.0	0.0	
chr6	36547375	36547525	reg1006759.p1	5.186	+	TSC_hg19_v1_chr6_-_36515255 BC012085 NM_007271 BC095413	-32193	-	TSC_hg19_v1_chr6_-_36515239 AK312559	-32298	-	TSC_hg19_v1_chr6_+_36410807 BC023525 AK302861 AK304377	-136618	+	NM_003017 TSC_hg19_v1_chr6_+_36562093	14641	+	TSC_hg19_v1_chr6_+_36562138 AK312553	14686	+	TSC_hg19_v1_chr6_+_36562140 AK304097 D28423 BC000914 BC069018 AF107405	14730	+	BC012085|STK38|11329|serine/threonine kinase 38##NM_007271|STK38|11329|serine/threonine kinase 38##BC095413|STK38|11329|serine/threonine kinase 38##AK312559|STK38|11329|serine/threonine kinase 38##BC023525|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK302861|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK304377|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_003017|SRSF3|6428|serine/arginine-rich splicing factor 3##AK312553|SRSF3|6428|serine/arginine-rich splicing factor 3##AK304097|SRSF3|6428|serine/arginine-rich splicing factor 3##BC000914|SRSF3|6428|serine/arginine-rich splicing factor 3##BC069018|SRSF3|6428|serine/arginine-rich splicing factor 3##AF107405|SRSF3|6428|serine/arginine-rich splicing factor 3	2.060484	0.0	denovo_WM_7:31:0.476	denovo_WM_7:-89:0.904	denovo_WM_7:-107:0.200
chr3	16436863	16436998	reg1010603.p2	5.185	+	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-130222	+	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	-130541	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-220736	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	118088	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	118294	-	BX648638 AK303026 NM_001190811	209340	-	NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like	0.996063	0.0	denovo_WM_7:30:0.900
chr6_ssto_hap7	1816737	1816878	reg1009057.p1	5.185	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998717	0.0	denovo_WM_7:16:0.310	denovo_WM_7:17:0.310	denovo_WM_7:18:0.310
chr7	75370055	75370154	reg1004086.p1	5.185	+	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	-1794	-	AF365404 AB385224 TSC_hg19_v1_chr7_-_75368255 AK094866 AK304738 BC110545	-1864	-	BC101598 BC143635 BC087844 BC022886 BC007683 BC014421 BC029646 TSC_hg19_v1_chr7_-_75157432 BC046153	-212919	-	NM_006072 AY358893	49034	-	AJ223461 BC069072 BC069391 NM_002991 U85768 AB590965 CU686790	72925	-	AF226732 TSC_hg19_v1_chr7_+_75508369 NM_001040456 NM_001040457 BC069017 AK026590	138230	+	AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##AF365404|HIP1|3092|huntingtin interacting protein 1##AK094866|HIP1|3092|huntingtin interacting protein 1##AK304738|HIP1|3092|huntingtin interacting protein 1##BC110545|HIP1|3092|huntingtin interacting protein 1##BC101598|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC143635|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC087844|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC007683|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC014421|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC046153|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26##AJ223461|CCL24|6369|chemokine (C-C motif) ligand 24##BC069072|CCL24|6369|chemokine (C-C motif) ligand 24##BC069391|CCL24|6369|chemokine (C-C motif) ligand 24##NM_002991|CCL24|6369|chemokine (C-C motif) ligand 24##U85768|CCL24|6369|chemokine (C-C motif) ligand 24##AF226732|RHBDD2|57414|rhomboid domain containing 2##NM_001040456|RHBDD2|57414|rhomboid domain containing 2##NM_001040457|RHBDD2|57414|rhomboid domain containing 2##BC069017|RHBDD2|57414|rhomboid domain containing 2##AK026590|RHBDD2|57414|rhomboid domain containing 2	1.957176	0.0	denovo_WM_7:47:0.497	denovo_WM_7:48:0.468
chr9	132754722	132754820	reg1007387.p2	5.185	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-157006	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-157049	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-157087	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	50583	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	50717	-	BC039728 NM_001136557 NM_001136558 NM_020960	61213	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.995245	0.0	
chr16	85133140	85133262	reg1008686.p1	5.184	+	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-71831	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-88072	-	TSC_hg19_v1_chr16_-_85045098 AK225768	-88108	-	BC093665 BC111944 AK126284 NM_198491	12853	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	511820	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	513752	+	AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK225768|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182	0.997202	0.0	denovo_WM_7:36:0.793
chr2	113340162	113340342	reg1001006.p2	5.184	+	BX647360 BC110833 BC150139 AK294027 TSC_hg19_v1_chr2_+_113300041 AK001678 AK301178 AK022533 BX647683	-40333	+	AK128044 NM_001137604 NM_019014 AK302814	-40701	+	TSC_hg19_v1_chr2_+_113279582 AK126378	-60598	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	1786	+	AK096990 TSC_hg19_v1_chr2_+_113342182	1937	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	63268	+	BX647360|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BC110833|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BC150139|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK294027|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK001678|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK301178|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK022533|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BX647683|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK128044|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##NM_001137604|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##NM_019014|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK302814|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK126378|TTL|150465|tubulin tyrosine ligase##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1	0.222391	0.0	denovo_WM_7:-2:0.222
chr3	111906350	111906461	reg1009212.p1	5.184	+	CU688884 BC030506 AY212246 AK313368 AK128276 AF521911 NM_001190259 NM_001190260 NM_152785	-54346	-	TSC_hg19_v1_chr3_+_111805267 AK303588 NM_001171747 NM_024616 AY830714 AK026839 BC017064 AK298076	-101177	+	AK131211 NM_001042575 BC117322	-147897	+	BC044801 NM_183061 AK128084	106683	-	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	145553	+	AL832529 AK129797 AK293399 BC031103 TSC_hg19_v1_chr3_+_112052024 AK074972	145619	+	BC030506|GCET2|257144|germinal center expressed transcript 2##AY212246|GCET2|257144|germinal center expressed transcript 2##AK313368|GCET2|257144|germinal center expressed transcript 2##AF521911|GCET2|257144|germinal center expressed transcript 2##NM_001190259|GCET2|257144|germinal center expressed transcript 2##NM_001190260|GCET2|257144|germinal center expressed transcript 2##NM_152785|GCET2|257144|germinal center expressed transcript 2##AK303588|C3orf52|79669|chromosome 3 open reading frame 52##NM_001171747|C3orf52|79669|chromosome 3 open reading frame 52##NM_024616|C3orf52|79669|chromosome 3 open reading frame 52##AY830714|C3orf52|79669|chromosome 3 open reading frame 52##AK026839|C3orf52|79669|chromosome 3 open reading frame 52##BC017064|C3orf52|79669|chromosome 3 open reading frame 52##AK298076|C3orf52|79669|chromosome 3 open reading frame 52##AK131211|TMPRSS7|344805|transmembrane protease, serine 7##NM_001042575|TMPRSS7|344805|transmembrane protease, serine 7##BC117322|TMPRSS7|344805|transmembrane protease, serine 7##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule##AL832529|CD200|4345|CD200 molecule##AK129797|CD200|4345|CD200 molecule##AK293399|CD200|4345|CD200 molecule##BC031103|CD200|4345|CD200 molecule##AK074972|CD200|4345|CD200 molecule	0.0	0.0	
chr16	31884698	31884783	reg1000128.p1	5.183	+	TSC_hg19_v1_chr16_+_31724584 AK299345 AK128671 BC018134 AX721120	-160139	+	TSC_hg19_v1_chr16_+_31724564 AL832197	-160175	+	TSC_hg19_v1_chr16_+_31724557 NM_001130913 BC055408	-160194	+	TSC_hg19_v1_chr16_+_31885098 NM_003414	347	+	TSC_hg19_v1_chr16_+_31885114 AK096390	376	+	AF220492 TSC_hg19_v1_chr16_+_31885131	392	+	AK128671|ZNF720|124411|zinc finger protein 720##BC018134|ZNF720|124411|zinc finger protein 720##AL832197|ZNF720|124411|zinc finger protein 720##NM_001130913|ZNF720|124411|zinc finger protein 720##BC055408|ZNF720|124411|zinc finger protein 720##NM_003414|ZNF267|10308|zinc finger protein 267##AK096390|ZNF267|10308|zinc finger protein 267##AF220492|ZNF267|10308|zinc finger protein 267	0.0	0.0	
chr17	19411466	19411601	reg1007941.p1	5.183	+	AK309372 NM_007148 AK313844 AK226052 BC038896 BC053989 AB026054 AB590107 EU446727	-96929	+	L38486 TSC_hg19_v1_chr17_-_19290504 BC047725 AK293056 AK304528 NM_001198695 NM_002404	-121032	-	TSC_hg19_v1_chr17_+_19282061 AY534741 AB527827 HQ257997	-129398	+	AK301854 TSC_hg19_v1_chr17_+_19437179 AK222625 AK001709 AK302620 NM_018242 BC022390 AK225360 BC010661 BC058882 BC050592 CU691318	25661	+	U46689 TSC_hg19_v1_chr17_+_19552087 NM_000382 NM_001031806 AK292381 L47162 AK025677 AK315096 BC002430 DQ895880 EU176377 CR457422 AB208894	140610	+	BC062614 AB250364 AB250701 BC035288 BC050578 AK055758 AK307647 NM_001099646 NM_152908	208427	-	AK309372|RNF112|7732|ring finger protein 112##NM_007148|RNF112|7732|ring finger protein 112##AK313844|RNF112|7732|ring finger protein 112##AK226052|RNF112|7732|ring finger protein 112##BC038896|RNF112|7732|ring finger protein 112##BC053989|RNF112|7732|ring finger protein 112##AB026054|RNF112|7732|ring finger protein 112##EU446727|RNF112|7732|ring finger protein 112##L38486|MFAP4|4239|microfibrillar-associated protein 4##BC047725|MFAP4|4239|microfibrillar-associated protein 4##AK293056|MFAP4|4239|microfibrillar-associated protein 4##AK304528|MFAP4|4239|microfibrillar-associated protein 4##NM_001198695|MFAP4|4239|microfibrillar-associated protein 4##NM_002404|MFAP4|4239|microfibrillar-associated protein 4##AY534741|MAPK7|5598|mitogen-activated protein kinase 7##HQ257997|MAPK7|5598|mitogen-activated protein kinase 7##AK301854|SLC47A1|55244|solute carrier family 47, member 1##AK222625|SLC47A1|55244|solute carrier family 47, member 1##AK001709|SLC47A1|55244|solute carrier family 47, member 1##AK302620|SLC47A1|55244|solute carrier family 47, member 1##NM_018242|SLC47A1|55244|solute carrier family 47, member 1##AK225360|SLC47A1|55244|solute carrier family 47, member 1##BC010661|SLC47A1|55244|solute carrier family 47, member 1##BC058882|SLC47A1|55244|solute carrier family 47, member 1##BC050592|SLC47A1|55244|solute carrier family 47, member 1##U46689|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##NM_000382|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##NM_001031806|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##AK292381|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##L47162|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##AK025677|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##AK315096|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##BC002430|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##DQ895880|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##EU176377|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##CR457422|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##AB208894|ALDH3A2|224|aldehyde dehydrogenase 3 family, member A2##BC062614|SLC47A2|146802|solute carrier family 47, member 2##AB250364|SLC47A2|146802|solute carrier family 47, member 2##AB250701|SLC47A2|146802|solute carrier family 47, member 2##BC035288|SLC47A2|146802|solute carrier family 47, member 2##BC050578|SLC47A2|146802|solute carrier family 47, member 2##AK055758|SLC47A2|146802|solute carrier family 47, member 2##AK307647|SLC47A2|146802|solute carrier family 47, member 2##NM_001099646|SLC47A2|146802|solute carrier family 47, member 2##NM_152908|SLC47A2|146802|solute carrier family 47, member 2	0.986716	0.0	denovo_WM_7:49:0.752
chr17	43490201	43490365	reg1010475.p1	5.183	+	TSC_hg19_v1_chr17_-_43487753 AK092891 AX747793 AK300880	-2533	-	TSC_hg19_v1_chr17_-_43394387 BC035576 BC022296 AK290203 AK313085 NM_003954	-95908	-	BC028124 AF433663 AK302184 AK058143 NM_152343	-150828	-	TSC_hg19_v1_chr17_-_43503000 AK125535 NM_199282	12718	-	TSC_hg19_v1_chr17_-_43510237 AK290650	19944	-	TSC_hg19_v1_chr17_-_43510292 BC067345 NM_174919	20004	-	AK092891|ARHGAP27|201176|Rho GTPase activating protein 27##AK300880|ARHGAP27|201176|Rho GTPase activating protein 27##BC035576|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC022296|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK290203|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK313085|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##NM_003954|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC028124|C17orf46|124783|chromosome 17 open reading frame 46##AF433663|C17orf46|124783|chromosome 17 open reading frame 46##AK302184|C17orf46|124783|chromosome 17 open reading frame 46##AK058143|C17orf46|124783|chromosome 17 open reading frame 46##NM_152343|C17orf46|124783|chromosome 17 open reading frame 46##AK125535|ARHGAP27|201176|Rho GTPase activating protein 27##NM_199282|ARHGAP27|201176|Rho GTPase activating protein 27##AK290650|ARHGAP27|201176|Rho GTPase activating protein 27##BC067345|ARHGAP27|201176|Rho GTPase activating protein 27##NM_174919|ARHGAP27|201176|Rho GTPase activating protein 27	1.979941	0.0	denovo_WM_7:53:0.206	denovo_WM_7:75:0.208
chr14	40237776	40237913	reg1007520.p1	5.182	+	BC053537 BC068566 BC030611 NM_203301	-336183	-	TSC_hg19_v1_chr14_-_39901371 BX248772	-336487	-	TSC_hg19_v1_chr14_+_39736592 BC039017 AK315254 BC029513 BC051363 U73682	-501271	+	NM_152447 AK096627	1838923	+	AK302615 CR933626 BC039878 CR933608 AK124110 NM_032135	4738631	-	TSC_hg19_v1_chr14_+_45366532 NM_001017923 BC105030 BC105032 AF250395	5128654	+	BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##BX248772|FBXO33|254170|F-box protein 33##BC039017|CTAGE5|4253|CTAGE family, member 5##AK315254|CTAGE5|4253|CTAGE family, member 5##BC029513|CTAGE5|4253|CTAGE family, member 5##BC051363|CTAGE5|4253|CTAGE family, member 5##U73682|CTAGE5|4253|CTAGE family, member 5##NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK302615|FSCB|84075|fibrous sheath CABYR binding protein##CR933626|FSCB|84075|fibrous sheath CABYR binding protein##BC039878|FSCB|84075|fibrous sheath CABYR binding protein##CR933608|FSCB|84075|fibrous sheath CABYR binding protein##AK124110|FSCB|84075|fibrous sheath CABYR binding protein##NM_032135|FSCB|84075|fibrous sheath CABYR binding protein##NM_001017923|C14orf28|122525|chromosome 14 open reading frame 28##BC105030|C14orf28|122525|chromosome 14 open reading frame 28##BC105032|C14orf28|122525|chromosome 14 open reading frame 28##AF250395|C14orf28|122525|chromosome 14 open reading frame 28	1.649508	0.0	denovo_WM_7:7:0.465	denovo_WM_7:26:0.712
chr3	142709847	142710027	reg1008879.p2	5.182	+	TSC_hg19_v1_chr3_+_142682794 BC062727	-27107	+	AK123932 BC118666 BC122527 NM_198504 AY424287	-27722	-	CR536570 TSC_hg19_v1_chr3_-_142607926 AB528798 AF098269 BC006265 AK315121 AY035400 AK223633 AY358557 AK075478 NM_013363	-102041	-	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	10493	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	128714	+	BC067737 TSC_hg19_v1_chr3_+_142895211	185234	+	BC062727|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK123932|PAQR9|344838|progestin and adipoQ receptor family member IX##BC118666|PAQR9|344838|progestin and adipoQ receptor family member IX##BC122527|PAQR9|344838|progestin and adipoQ receptor family member IX##NM_198504|PAQR9|344838|progestin and adipoQ receptor family member IX##AY424287|PAQR9|344838|progestin and adipoQ receptor family member IX##CR536570|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##AF098269|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##BC006265|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##AK315121|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##AY035400|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##AK223633|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##AY358557|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##AK075478|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##NM_013363|PCOLCE2|26577|procollagen C-endopeptidase enhancer 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2	0.143898	0.0	
chr7	73682260	73682421	reg1008767.p2	5.182	+	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	-13604	-	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	-13629	-	TSC_hg19_v1_chr7_+_73624361 AF252613	-57986	+	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	21447	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	185824	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	185968	+	NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AF252613|LAT2|7462|linker for activation of T cells family, member 2##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1	1.161697	0.0	
chr12	53649818	53649945	reg1008647.p1	5.181	+	TSC_hg19_v1_chr12_+_53646007 AK225998	-3885	+	TSC_hg19_v1_chr12_+_53645948 AY358604 BC067795 BX640649	-3938	+	TSC_hg19_v1_chr12_+_53645885 NM_032889 AK074684	-4001	+	TSC_hg19_v1_chr12_+_53662054 NM_012291 D79987	12198	+	NM_002624 NM_145897 TSC_hg19_v1_chr12_+_53689331 BC003373 AB055803 AB055804 AB055805 AK024094 AK292623 BC062671	39407	+	AB527693 CU687580 BT007195 TSC_hg19_v1_chr12_+_53689361	39475	+	AK225998|MFSD5|84975|major facilitator superfamily domain containing 5##AY358604|MFSD5|84975|major facilitator superfamily domain containing 5##BC067795|MFSD5|84975|major facilitator superfamily domain containing 5##BX640649|MFSD5|84975|major facilitator superfamily domain containing 5##NM_032889|MFSD5|84975|major facilitator superfamily domain containing 5##AK074684|MFSD5|84975|major facilitator superfamily domain containing 5##NM_012291|ESPL1|9700|extra spindle pole bodies homolog 1 (S. cerevisiae)##D79987|ESPL1|9700|extra spindle pole bodies homolog 1 (S. cerevisiae)##NM_002624|PFDN5|5204|prefoldin subunit 5##NM_145897|PFDN5|5204|prefoldin subunit 5##BC003373|PFDN5|5204|prefoldin subunit 5##AB055803|PFDN5|5204|prefoldin subunit 5##AB055804|PFDN5|5204|prefoldin subunit 5##AB055805|PFDN5|5204|prefoldin subunit 5##AK024094|PFDN5|5204|prefoldin subunit 5##AK292623|PFDN5|5204|prefoldin subunit 5##BC062671|PFDN5|5204|prefoldin subunit 5##BT007195|PFDN5|5204|prefoldin subunit 5	0.991768	0.0	denovo_WM_7:0:0.389	denovo_WM_7:1:0.389
chr13	31004529	31004633	reg1007188.p1	5.181	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-123012	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-123430	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-579740	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	35412	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	35477	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	187046	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	0.682525	0.0	denovo_WM_7:29:0.258
chr19	16229450	16229630	reg1000655.p1	5.181	+	AK293676 TSC_hg19_v1_chr19_+_16222706 X56741 AF498943 BT007184 CR536583 CR542274 DQ892523 DQ895735 AB209767	-6818	+	TSC_hg19_v1_chr19_+_16222683 BC002977	-6924	+	TSC_hg19_v1_chr19_+_16222463 AK025165 NM_005370	-7066	+	TSC_hg19_v1_chr19_-_16243033 AY927516	13522	-	AY319652 NM_032855	15297	+	TSC_hg19_v1_chr19_-_16250705 AK095221	21164	-	AK293676|RAB8A|4218|RAB8A, member RAS oncogene family##X56741|RAB8A|4218|RAB8A, member RAS oncogene family##AF498943|RAB8A|4218|RAB8A, member RAS oncogene family##BT007184|RAB8A|4218|RAB8A, member RAS oncogene family##CR536583|RAB8A|4218|RAB8A, member RAS oncogene family##CR542274|RAB8A|4218|RAB8A, member RAS oncogene family##DQ892523|RAB8A|4218|RAB8A, member RAS oncogene family##DQ895735|RAB8A|4218|RAB8A, member RAS oncogene family##AB209767|RAB8A|4218|RAB8A, member RAS oncogene family##BC002977|RAB8A|4218|RAB8A, member RAS oncogene family##AK025165|RAB8A|4218|RAB8A, member RAS oncogene family##NM_005370|RAB8A|4218|RAB8A, member RAS oncogene family##AY319652|HSH2D|84941|hematopoietic SH2 domain containing##NM_032855|HSH2D|84941|hematopoietic SH2 domain containing	0.0	0.0	
chr19	47395874	47395995	reg1005970.p2	5.181	+	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	-41803	-	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-104212	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-104661	-	AB051509 AF159851 BC131565 BC150257 NM_004491	25998	+	TSC_hg19_v1_chr19_+_47523068 BC039016	127142	+	AB054002 NM_002517 U77968	128277	+	BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1	0.994076	0.0	denovo_WM_7:-21:0.305	denovo_WM_7:-22:0.305	denovo_WM_7:-23:0.305
chr4	26180830	26181010	reg1007183.p1	5.181	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-265056	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-316366	-	NM_001177999 AK314514	-522830	+	L07875 BC020780 NM_005349 NM_203283	140399	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	141389	+	TSC_hg19_v1_chr4_+_26322635 AK302230	141716	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.988885	0.0	denovo_WM_7:2:0.490	denovo_WM_7:3:0.405
chr6	39356907	39357028	reg1009889.p2	5.181	+	AF358909 AY253145 AY253146 AY253147 BC111860 NM_001135105 NM_001135106 NM_001135107 NM_032115 EU978943	-66628	-	AF358910 CU693040 DQ891712 DQ894889 EU978944 BC025726 AY358853 AF339912 AK310582 AK315273 NM_031460 NM_001135111	-74802	-	AF084830 BC060793 NM_003740 TSC_hg19_v1_chr6_-_39197252	-159727	-	BC117307 BC143444 BC143445 AK131471 NM_145027	336178	-	TSC_hg19_v1_chr6_+_39760140 AK091749 AX747160	403172	+	TSC_hg19_v1_chr6_+_39760151 AK310941 AB002379 NM_001201427 BC047575	403195	+	AF358909|KCNK16|83795|potassium channel, subfamily K, member 16##AY253145|KCNK16|83795|potassium channel, subfamily K, member 16##AY253146|KCNK16|83795|potassium channel, subfamily K, member 16##AY253147|KCNK16|83795|potassium channel, subfamily K, member 16##BC111860|KCNK16|83795|potassium channel, subfamily K, member 16##NM_001135105|KCNK16|83795|potassium channel, subfamily K, member 16##NM_001135106|KCNK16|83795|potassium channel, subfamily K, member 16##NM_001135107|KCNK16|83795|potassium channel, subfamily K, member 16##NM_032115|KCNK16|83795|potassium channel, subfamily K, member 16##EU978943|KCNK16|83795|potassium channel, subfamily K, member 16##AF358910|KCNK17|89822|potassium channel, subfamily K, member 17##DQ891712|KCNK17|89822|potassium channel, subfamily K, member 17##DQ894889|KCNK17|89822|potassium channel, subfamily K, member 17##EU978944|KCNK17|89822|potassium channel, subfamily K, member 17##BC025726|KCNK17|89822|potassium channel, subfamily K, member 17##AY358853|KCNK17|89822|potassium channel, subfamily K, member 17##AF339912|KCNK17|89822|potassium channel, subfamily K, member 17##AK310582|KCNK17|89822|potassium channel, subfamily K, member 17##AK315273|KCNK17|89822|potassium channel, subfamily K, member 17##NM_031460|KCNK17|89822|potassium channel, subfamily K, member 17##NM_001135111|KCNK17|89822|potassium channel, subfamily K, member 17##AF084830|KCNK5|8645|potassium channel, subfamily K, member 5##BC060793|KCNK5|8645|potassium channel, subfamily K, member 5##NM_003740|KCNK5|8645|potassium channel, subfamily K, member 5##BC117307|KIF6|221458|kinesin family member 6##BC143444|KIF6|221458|kinesin family member 6##BC143445|KIF6|221458|kinesin family member 6##AK131471|KIF6|221458|kinesin family member 6##NM_145027|KIF6|221458|kinesin family member 6##AK310941|DAAM2|23500|dishevelled associated activator of morphogenesis 2##AB002379|DAAM2|23500|dishevelled associated activator of morphogenesis 2##NM_001201427|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC047575|DAAM2|23500|dishevelled associated activator of morphogenesis 2	0.0	0.0	
chr19	4863826	4864006	reg1003115.p1	5.180	+	TSC_hg19_v1_chr19_-_4831725 BC035331 NM_182919	-32191	-	AF070530 TSC_hg19_v1_chr19_-_4817612	-46358	-	TSC_hg19_v1_chr19_+_4791757 AK074232 BC004988 AY356352 EU446817 AB384759 AJ311359	-72104	+	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	3729	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	3749	-	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	3826	-	BC035331|TICAM1|148022|toll-like receptor adaptor molecule 1##NM_182919|TICAM1|148022|toll-like receptor adaptor molecule 1##AF070530|TICAM1|148022|toll-like receptor adaptor molecule 1##AK074232|FEM1A|55527|fem-1 homolog a (C. elegans)##BC004988|FEM1A|55527|fem-1 homolog a (C. elegans)##AY356352|FEM1A|55527|fem-1 homolog a (C. elegans)##EU446817|FEM1A|55527|fem-1 homolog a (C. elegans)##AJ311359|FEM1A|55527|fem-1 homolog a (C. elegans)##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3	1.035647	0.0	denovo_WM_7:-68:0.664
chr8	132925201	132925381	reg1009276.p1	5.180	+	TSC_hg19_v1_chr8_+_132916408 AB385283	-8813	+	AK307433 TSC_hg19_v1_chr8_+_132916394	-8901	+	TSC_hg19_v1_chr8_+_132916379 BC108667	-8914	+	BX648595 TSC_hg19_v1_chr8_+_132991247	65918	+	AK297911 NM_001080399	146335	-	NM_001145095	192220	-	AK307433|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC108667|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BX648595|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##AK297911|OC90|729330|otoconin 90##NM_001080399|OC90|729330|otoconin 90##NM_001145095|HHLA1|10086|HERV-H LTR-associating 1	1.977743	0.0	denovo_WM_7:96:0.491	denovo_WM_7:97:0.492
chr9	134258883	134259003	reg1008492.p1	5.180	+	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	-93715	+	BC049388 NM_033387 AK095423	-107024	-	TSC_hg19_v1_chr9_+_134001016 D14689 AB159230	-257893	+	TSC_hg19_v1_chr9_+_134269515 BC002872	10623	+	NM_013318 TSC_hg19_v1_chr9_+_134305488	46539	+	CU678266 TSC_hg19_v1_chr9_+_134305548	46597	+	AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##D14689|NUP214|8021|nucleoporin 214kDa##AB159230|NUP214|8021|nucleoporin 214kDa##BC002872|PRRC2B|84726|proline-rich coiled-coil 2B##NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B	0.992476	0.0	
chr22	38577895	38578004	reg1010350.p1	5.179	+	CR456543 TSC_hg19_v1_chr22_-_38577838 AK291212 BC036742 AL080187 NM_001004426 NM_003560 AF064594 AK308308 BC051904 AK096521 AK290825 NM_001199562 AK300459	-156	-	TSC_hg19_v1_chr22_-_38506676 AY358164 NM_025045	-71272	-	CU677367 TSC_hg19_v1_chr22_-_38506639 AK026235 BC015619	-71347	-	NM_001161572 NM_001161574 NM_012323 TSC_hg19_v1_chr22_+_38597996 AK002001 BC067751 AK300932 AJ010857	20028	+	BC015037 TSC_hg19_v1_chr22_+_38598094 AB025247	20137	+	NM_001161573	21077	+	CR456543|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK291212|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC036742|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AL080187|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001004426|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_003560|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AF064594|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK308308|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##BC051904|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK096521|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK290825|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##NM_001199562|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AK300459|PLA2G6|8398|phospholipase A2, group VI (cytosolic, calcium-independent)##AY358164|BAIAP2L2|80115|BAI1-associated protein 2-like 2##NM_025045|BAIAP2L2|80115|BAI1-associated protein 2-like 2##AK026235|BAIAP2L2|80115|BAI1-associated protein 2-like 2##BC015619|BAIAP2L2|80115|BAI1-associated protein 2-like 2##NM_001161572|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_001161574|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_012323|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK002001|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC067751|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AK300932|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AJ010857|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##BC015037|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##AB025247|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)##NM_001161573|MAFF|23764|v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)	0.0	0.0	
chr3	115725917	115726088	reg1008820.p1	5.179	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-383583	+	NM_001130064 NM_002045	-383852	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-859888	-	AK315286 TSC_hg19_v1_chr3_-_116164338	438329	-	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	438371	-	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	3027531	-	AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315286|LSAMP|4045|limbic system-associated membrane protein##BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11	0.983256	0.0	denovo_WM_7:-43:0.902
chr3	196369897	196370061	reg1006380.p1	5.179	+	BC044233 NM_198565 TSC_hg19_v1_chr3_+_196366658 AY358322	-3317	+	TSC_hg19_v1_chr3_+_196366647 BC034704	-3334	+	TSC_hg19_v1_chr3_+_196295733 NM_001105573	-74247	+	AK058155 TSC_hg19_v1_chr3_-_196439156 BC007827 AY099509 NM_032898 AK314070	69137	-	TSC_hg19_v1_chr3_+_196439214 NM_001166304 NM_017861 AK000529 BC022542	69280	+	TSC_hg19_v1_chr3_+_196466727 NM_002577	96746	+	BC044233|LRRC33|375387|leucine rich repeat containing 33##NM_198565|LRRC33|375387|leucine rich repeat containing 33##AY358322|LRRC33|375387|leucine rich repeat containing 33##BC034704|LRRC33|375387|leucine rich repeat containing 33##NM_001105573|FBXO45|200933|F-box protein 45##AK058155|CEP19|84984|centrosomal protein 19kDa##BC007827|CEP19|84984|centrosomal protein 19kDa##AY099509|CEP19|84984|centrosomal protein 19kDa##NM_032898|CEP19|84984|centrosomal protein 19kDa##AK314070|CEP19|84984|centrosomal protein 19kDa##NM_001166304|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_017861|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##AK000529|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##BC022542|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_002577|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2	1.367207	0.0	denovo_WM_7:-24:0.310	denovo_WM_7:-25:0.310	denovo_WM_7:-26:0.310	denovo_WM_7:40:0.340
chrX	118894493	118894657	reg1009527.p2	5.179	+	TSC_hg19_v1_chrX_+_118892553 NM_001105576	-1994	+	AY034177 AF403058 AF403059 AF403060 AF403061 AF403062 AY679521 NM_015129 NM_145799 NM_145800 NM_145802 TSC_hg19_v1_chrX_-_118827360 AK290977	-67224	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	-67396	-	U57846 AK098280 BC001019 D79205 TSC_hg19_v1_chrX_-_118925592 BC070205 D28397 NM_001000	31009	-	TSC_hg19_v1_chrX_-_118986969 AF318576 AK093728 AX748280 BC121017 BC121018 AY013251 BC008494 NM_023010 NM_080632	92376	-	AB464688 BT007175 CU676558 BC000832 TSC_hg19_v1_chrX_-_119005683 BC128440 BC020556 AK314778 X98253 NM_006978	111107	-	NM_001105576|ANKRD58|347454|ankyrin repeat domain 58##AY034177|SEPT6|23157|septin 6##AF403058|SEPT6|23157|septin 6##AF403059|SEPT6|23157|septin 6##AF403060|SEPT6|23157|septin 6##AF403061|SEPT6|23157|septin 6##AF403062|SEPT6|23157|septin 6##AY679521|SEPT6|23157|septin 6##NM_015129|SEPT6|23157|septin 6##NM_145799|SEPT6|23157|septin 6##NM_145800|SEPT6|23157|septin 6##NM_145802|SEPT6|23157|septin 6##AK290977|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6##U57846|RPL39|6170|ribosomal protein L39##BC001019|RPL39|6170|ribosomal protein L39##D79205|RPL39|6170|ribosomal protein L39##BC070205|RPL39|6170|ribosomal protein L39##D28397|RPL39|6170|ribosomal protein L39##NM_001000|RPL39|6170|ribosomal protein L39##AF318576|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AK093728|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121017|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121018|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AY013251|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC008494|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_023010|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_080632|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BT007175|RNF113A|7737|ring finger protein 113A##BC000832|RNF113A|7737|ring finger protein 113A##BC020556|RNF113A|7737|ring finger protein 113A##AK314778|RNF113A|7737|ring finger protein 113A##X98253|RNF113A|7737|ring finger protein 113A##NM_006978|RNF113A|7737|ring finger protein 113A	0.0118	0.0	
chrX	122542867	122543020	reg1008453.p1	5.178	+	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	-224703	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-2361503	+	BC029540 NM_001080141 NM_001080146	-2423306	-	TSC_hg19_v1_chrX_-_122866885 AK001758	323940	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	323954	-	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	450999	+	NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2##AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis	0.0	0.013977	
chr11	118566354	118566534	reg1007516.p1	5.177	+	AK223140 AK309565 AK091981 AK223143 AX747289 BC109206 NM_007180 AB000824	-16077	-	NM_001144758 NM_001144759 TSC_hg19_v1_chr11_+_118478332 CR749783 BC098586 AB014538 AK295819 AL832373 AK074070 AK125783	-88067	+	AB094090 NM_015157	-89232	+	BC065007 TSC_hg19_v1_chr11_-_118661679 AK313244	95189	-	TSC_hg19_v1_chr11_-_118661835 D17532	95392	-	BC039826 TSC_hg19_v1_chr11_-_118661855	95411	-	AK223140|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK309565|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK091981|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK223143|TREH|11181|trehalase (brush-border membrane glycoprotein)##BC109206|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_007180|TREH|11181|trehalase (brush-border membrane glycoprotein)##AB000824|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_001144758|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_001144759|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##CR749783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC098586|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB014538|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK295819|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AL832373|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK074070|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK125783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC065007|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK313244|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##D17532|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC039826|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.999148	0.0	denovo_WM_7:-52:0.739
chr15	57079274	57079413	reg1008271.p1	5.177	+	TSC_hg19_v1_chr15_-_57025818 BX641000 BX640707 NM_001002843 NM_001002844 NM_017661 AK295159	-53511	-	TSC_hg19_v1_chr15_-_57025690 AB046804 BC053649 BC064359 AK310882 AK289739 BC130451 BC136412	-53631	-	TSC_hg19_v1_chr15_-_56757262 BC031046 AK310029 BC012554 BC034991 AK002084 NM_018365	-322057	-	TSC_hg19_v1_chr15_-_57210733 AK096657 BC036541	131393	-	TSC_hg19_v1_chr15_+_57210823 NM_003205 NM_207036 NM_207037 NM_207038	131484	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	131525	+	BX641000|ZNF280D|54816|zinc finger protein 280D##BX640707|ZNF280D|54816|zinc finger protein 280D##NM_001002843|ZNF280D|54816|zinc finger protein 280D##NM_001002844|ZNF280D|54816|zinc finger protein 280D##NM_017661|ZNF280D|54816|zinc finger protein 280D##AK295159|ZNF280D|54816|zinc finger protein 280D##AB046804|ZNF280D|54816|zinc finger protein 280D##BC053649|ZNF280D|54816|zinc finger protein 280D##BC064359|ZNF280D|54816|zinc finger protein 280D##AK310882|ZNF280D|54816|zinc finger protein 280D##AK289739|ZNF280D|54816|zinc finger protein 280D##BC130451|ZNF280D|54816|zinc finger protein 280D##BC136412|ZNF280D|54816|zinc finger protein 280D##BC031046|MNS1|55329|meiosis-specific nuclear structural 1##BC012554|MNS1|55329|meiosis-specific nuclear structural 1##BC034991|MNS1|55329|meiosis-specific nuclear structural 1##AK002084|MNS1|55329|meiosis-specific nuclear structural 1##NM_018365|MNS1|55329|meiosis-specific nuclear structural 1##AK096657|LOC145783|145783|uncharacterized LOC145783##NM_003205|TCF12|6938|transcription factor 12##NM_207036|TCF12|6938|transcription factor 12##NM_207037|TCF12|6938|transcription factor 12##NM_207038|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12	0.044643	0.0	
chr15	91535924	91536104	reg1002128.p1	5.177	+	BC064606 BC113826 TSC_hg19_v1_chr15_+_91499981	-36039	+	TSC_hg19_v1_chr15_+_91498113 NM_001017919 NM_033544 BC140708 BC140709 BC094739	-37923	+	TSC_hg19_v1_chr15_+_91478539 AK000905 AK293538 BC037992 DQ892953 DQ896200 CU691534	-57460	+	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	1752	-	CU677627 TSC_hg19_v1_chr15_-_91565525	29488	-	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	29756	-	BC064606|RCCD1|91433|RCC1 domain containing 1##BC113826|RCCD1|91433|RCC1 domain containing 1##NM_001017919|RCCD1|91433|RCC1 domain containing 1##NM_033544|RCCD1|91433|RCC1 domain containing 1##BC140708|RCCD1|91433|RCC1 domain containing 1##BC140709|RCCD1|91433|RCC1 domain containing 1##BC094739|RCCD1|91433|RCC1 domain containing 1##AK000905|UNC45A|55898|unc-45 homolog A (C. elegans)##AK293538|UNC45A|55898|unc-45 homolog A (C. elegans)##BC037992|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ892953|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ896200|UNC45A|55898|unc-45 homolog A (C. elegans)##AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)	0.0	0.0	
chr4	41198563	41198668	reg1008277.p1	5.177	+	BC088372 TSC_hg19_v1_chr4_-_40936716	-261937	-	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	-339440	-	BC042401 NM_024677 BC036568 AK024063	-446669	+	TSC_hg19_v1_chr4_-_41216560 BC027946 AK304247 AK226179 NM_001166050 NM_004307 NM_173075	17954	-	TSC_hg19_v1_chr4_+_41258897 NM_004181	60281	+	TSC_hg19_v1_chr4_+_41258913 BC000332 BC018838	60303	+	BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##BC027946|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK304247|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK226179|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166050|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004307|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_173075|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004181|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC000332|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC018838|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	0.999653	0.0	
chr8	145002571	145002683	reg1004202.p1	5.177	+	AB051895 NM_031308	-55194	-	TSC_hg19_v1_chr8_-_144923180 BC071605 AK293943 NM_178564	-79468	-	TSC_hg19_v1_chr8_-_144911540 AF114818 AK292373 NM_014281 NM_078480	-91077	-	AF330791 TSC_hg19_v1_chr8_-_145013766 AY480051 NM_201384	11076	-	AY480050 NM_201383 TSC_hg19_v1_chr8_-_145016793	14134	-	AF330792 AY480049 TSC_hg19_v1_chr8_-_145018117 NM_201382	15477	-	AB051895|EPPK1|83481|epiplakin 1##NM_031308|EPPK1|83481|epiplakin 1##BC071605|NRBP2|340371|nuclear receptor binding protein 2##AK293943|NRBP2|340371|nuclear receptor binding protein 2##NM_178564|NRBP2|340371|nuclear receptor binding protein 2##AF114818|PUF60|22827|poly-U binding splicing factor 60KDa##AK292373|PUF60|22827|poly-U binding splicing factor 60KDa##NM_014281|PUF60|22827|poly-U binding splicing factor 60KDa##NM_078480|PUF60|22827|poly-U binding splicing factor 60KDa##AY480051|PLEC|5339|plectin##NM_201384|PLEC|5339|plectin##AY480050|PLEC|5339|plectin##NM_201383|PLEC|5339|plectin##AF330792|PLEC|5339|plectin##AY480049|PLEC|5339|plectin##NM_201382|PLEC|5339|plectin	0.0	0.0	
chr9	33871652	33871832	reg1008121.p1	5.177	+	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	-54070	+	TSC_hg19_v1_chr9_+_33817325 BC047584 AK000426 BC004862 AK225880	-54348	+	TSC_hg19_v1_chr9_+_33817170 NM_017811	-54558	+	AB209911 TSC_hg19_v1_chr9_-_34048886 AK302754 AK294952 AK299183 AK303493 CR933678	177135	-	TSC_hg19_v1_chr9_-_34048895 BC111409 AK302335 NM_018449	177174	-	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	254844	-	AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC047584|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000426|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC004862|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK225880|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##NM_017811|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AB209911|UBAP2|55833|ubiquitin associated protein 2##AK302754|UBAP2|55833|ubiquitin associated protein 2##AK294952|UBAP2|55833|ubiquitin associated protein 2##AK299183|UBAP2|55833|ubiquitin associated protein 2##AK303493|UBAP2|55833|ubiquitin associated protein 2##CR933678|UBAP2|55833|ubiquitin associated protein 2##BC111409|UBAP2|55833|ubiquitin associated protein 2##AK302335|UBAP2|55833|ubiquitin associated protein 2##NM_018449|UBAP2|55833|ubiquitin associated protein 2##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12	0.037284	0.0	
chr1	236959309	236959440	reg1007519.p2	5.176	+	TSC_hg19_v1_chr1_+_236958699 U75743 U71285 BC130616 BC136440 BC144095 BC144097 BC144098	-539	+	TSC_hg19_v1_chr1_+_236958611 AK299904 NM_000254 AK307390 U73338 AK294270	-797	+	AK315250 NM_001103 TSC_hg19_v1_chr1_+_236849798 AK297886 M86406 AB209521 BC051770 BC047901 AB590561 CU690840	-109512	+	NM_001035 X98330 Y08218	246399	+	AK314151 NM_021186	1094847	-	TSC_hg19_v1_chr1_+_239550016 AK056349	2590568	+	U75743|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U71285|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC130616|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC136440|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144095|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144097|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##BC144098|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK299904|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##NM_000254|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK307390|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##U73338|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK294270|MTR|4548|5-methyltetrahydrofolate-homocysteine methyltransferase##AK315250|ACTN2|88|actinin, alpha 2##NM_001103|ACTN2|88|actinin, alpha 2##AK297886|ACTN2|88|actinin, alpha 2##M86406|ACTN2|88|actinin, alpha 2##AB209521|ACTN2|88|actinin, alpha 2##BC051770|ACTN2|88|actinin, alpha 2##BC047901|ACTN2|88|actinin, alpha 2##NM_001035|RYR2|6262|ryanodine receptor 2 (cardiac)##X98330|RYR2|6262|ryanodine receptor 2 (cardiac)##Y08218|RYR2|6262|ryanodine receptor 2 (cardiac)##AK314151|ZP4|57829|zona pellucida glycoprotein 4##NM_021186|ZP4|57829|zona pellucida glycoprotein 4##AK056349|CHRM3|1131|cholinergic receptor, muscarinic 3	0.058366	0.0	
chr16	30345722	30345902	reg1010786.p1	5.176	+	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-135244	+	BC022832 NM_001031827 NM_001039182	-140186	-	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	-140619	+	TSC_hg19_v1_chr16_-_30346695 AK289905 BC063703	887	-	BC013854 NM_001243646	20442	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	20788	-	AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK289905|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC063703|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC013854|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_001243646|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2	0.0	0.0	
chr1	6457227	6457344	reg1009531.p1	5.176	+	BC017365 AK057168 NM_007274	-3486	-	BT006888 TSC_hg19_v1_chr1_-_6453439 AB074415 AB074416 D88894 AK289572 AK300831	-3874	-	AK290097 AB074417 NM_181864	-11476	-	AB463714 BC132698 BC136963 BC142687 TSC_hg19_v1_chr1_-_6479976 AK091122 NM_019089	22645	-	TSC_hg19_v1_chr1_+_6484835 AL136880 NM_031475	27546	+	U83597 U83598 U75380 U75381 U94512 AB308321 AB590587 HQ258574 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 TSC_hg19_v1_chr1_-_6526206 AF026070 AF026071 BC117189 BC143886 Y09392 AY358309 NM_001039664 NM_003790 NM_148965 NM_148966 NM_148967 NM_148970 U74611	68917	-	BC017365|ACOT7|11332|acyl-CoA thioesterase 7##AK057168|ACOT7|11332|acyl-CoA thioesterase 7##NM_007274|ACOT7|11332|acyl-CoA thioesterase 7##BT006888|ACOT7|11332|acyl-CoA thioesterase 7##AB074415|ACOT7|11332|acyl-CoA thioesterase 7##AB074416|ACOT7|11332|acyl-CoA thioesterase 7##D88894|ACOT7|11332|acyl-CoA thioesterase 7##AK289572|ACOT7|11332|acyl-CoA thioesterase 7##AK300831|ACOT7|11332|acyl-CoA thioesterase 7##AK290097|ACOT7|11332|acyl-CoA thioesterase 7##AB074417|ACOT7|11332|acyl-CoA thioesterase 7##NM_181864|ACOT7|11332|acyl-CoA thioesterase 7##BC132698|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC136963|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC142687|HES2|54626|hairy and enhancer of split 2 (Drosophila)##AK091122|HES2|54626|hairy and enhancer of split 2 (Drosophila)##NM_019089|HES2|54626|hairy and enhancer of split 2 (Drosophila)##AL136880|ESPN|83715|espin##NM_031475|ESPN|83715|espin##U83597|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U83598|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U75380|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U75381|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94512|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AB308321|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##HQ258574|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U72763|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U78029|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94501|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94502|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94503|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94504|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94505|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94506|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94507|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94508|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94509|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94510|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AF026070|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AF026071|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##BC117189|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##BC143886|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##Y09392|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AY358309|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_001039664|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_003790|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148965|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148966|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148967|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148970|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U74611|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25	0.999533	0.584882	CTCF.p2:-24:0.585	denovo_WM_7:41:0.964
chr19	59031178	59031358	reg1009727.p1	5.176	+	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	-80	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	-315	-	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	-7891	-	TSC_hg19_v1_chr19_+_59055826 AK225760 BC004978 NM_005762 BC052986	24564	+	TSC_hg19_v1_chr19_+_59055881 U95040	24620	+	U78773 TSC_hg19_v1_chr19_+_59056118 AK313478 AB385179	24802	+	AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK225760|TRIM28|10155|tripartite motif containing 28##BC004978|TRIM28|10155|tripartite motif containing 28##NM_005762|TRIM28|10155|tripartite motif containing 28##BC052986|TRIM28|10155|tripartite motif containing 28##U95040|TRIM28|10155|tripartite motif containing 28##U78773|TRIM28|10155|tripartite motif containing 28##AK313478|TRIM28|10155|tripartite motif containing 28	0.0	0.0	
chr4	12725512	12725636	reg1010371.p1	5.176	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-1295042	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-2039173	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-2266564	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	760377	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	760401	-	AB463932 AF009801 EU446467 BC111966 NM_001189	820501	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	0.995661	0.0	
chr10	34874426	34874567	reg1007845.p1	5.175	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-1250498	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-1250682	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-1251043	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	229655	-	AK310225 AK300491 NM_001198778 NM_001198779	488716	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	504776	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	1.971981	0.0	denovo_WM_7:-17:0.817	denovo_WM_7:-33:0.336	denovo_WM_7:-37:0.310
chr1	202310961	202311141	reg1001773.p2	5.175	+	AF190501 NM_001017404	-127769	+	AY358119 BC038795 NM_021636 BC047905	-138159	+	NM_001017403 AB049405	-147877	+	AK000504 AF160215 BC004152 BC019284 TSC_hg19_v1_chr1_-_202311065	5	-	TSC_hg19_v1_chr1_-_202311082 AF161499 NM_014176	35	-	TSC_hg19_v1_chr1_+_202317826 AK307591 NM_001167857 NM_001167858 NM_002481 AB003062 AF324888 BC144699 BC110907 BC034430 BC071166	6822	+	AF190501|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017404|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AY358119|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC038795|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_021636|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC047905|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017403|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AB049405|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AK000504|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF160215|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC004152|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##BC019284|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AF161499|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##NM_014176|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AK307591|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167857|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167858|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_002481|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB003062|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF324888|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC144699|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC110907|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC034430|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC071166|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B	0.0	0.0	
chr4	38859247	38859367	reg1007910.p1	5.174	+	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	-879	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	-52888	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	-74708	-	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	10084	+	BC030803 BC060512 AK026888 NM_024943	174703	-	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	187131	+	AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10##NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)	0.96	0.0	denovo_WM_7:-21:0.848
chr7	74001788	74001941	reg1007038.p1	5.174	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-133429	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-133556	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-133700	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	70157	+	TSC_hg19_v1_chr7_+_74072046 BC070484	70180	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	70258	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.980619	0.0	denovo_WM_7:-76:0.724
chr1	169658874	169659023	reg1009947.p2	5.173	+	M25322 AK312884 BC068533 NM_003005	-59586	-	TSC_hg19_v1_chr1_-_169555717 AK291613 AK300469 NM_000130	-103209	-	AB385005 AK226079 M14335 TSC_hg19_v1_chr1_-_169555700 M16967	-103284	-	AB528958 CU676702 DQ891376 DQ894554 AJ246000 X16150 X17519 BC020758 X16070 AK225713 AK312673 M25280 TSC_hg19_v1_chr1_-_169680762 NM_000655	21811	-	BC131551 M24736 M30640 BC142677 BC142711 AK314214 NM_000450 TSC_hg19_v1_chr1_-_169703221	44251	-	AL035369 NM_033418 AK313909	105084	-	M25322|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##AK312884|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##BC068533|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##NM_003005|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##AK291613|F5|2153|coagulation factor V (proaccelerin, labile factor)##AK300469|F5|2153|coagulation factor V (proaccelerin, labile factor)##NM_000130|F5|2153|coagulation factor V (proaccelerin, labile factor)##AK226079|F5|2153|coagulation factor V (proaccelerin, labile factor)##M14335|F5|2153|coagulation factor V (proaccelerin, labile factor)##M16967|F5|2153|coagulation factor V (proaccelerin, labile factor)##DQ891376|SELL|6402|selectin L##DQ894554|SELL|6402|selectin L##AJ246000|SELL|6402|selectin L##X16150|SELL|6402|selectin L##X17519|SELL|6402|selectin L##BC020758|SELL|6402|selectin L##X16070|SELL|6402|selectin L##AK225713|SELL|6402|selectin L##AK312673|SELL|6402|selectin L##M25280|SELL|6402|selectin L##NM_000655|SELL|6402|selectin L##BC131551|SELE|6401|selectin E##M24736|SELE|6401|selectin E##M30640|SELE|6401|selectin E##BC142677|SELE|6401|selectin E##BC142711|SELE|6401|selectin E##AK314214|SELE|6401|selectin E##NM_000450|SELE|6401|selectin E##AL035369|METTL18|92342|methyltransferase like 18##NM_033418|METTL18|92342|methyltransferase like 18##AK313909|METTL18|92342|methyltransferase like 18	0.997213	0.0	denovo_WM_7:-21:0.793
chr4	26133679	26133814	reg1010132.p1	5.173	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-217882	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-269192	-	NM_001177999 AK314514	-475656	+	L07875 BC020780 NM_005349 NM_203283	187573	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	188563	+	TSC_hg19_v1_chr4_+_26322635 AK302230	188890	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.0	0.0	
chr17	38685270	38685450	reg1011270.p1	5.172	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-27514	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-85541	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-111236	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	36358	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	118710	-	BC069196 TSC_hg19_v1_chr17_-_38804818	119436	-	AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	1.997465	0.0	denovo_WM_7:-15:0.479	denovo_WM_7:-16:0.427	denovo_WM_7:-38:0.848
chr10	122587182	122587322	reg1011184.p1	5.171	+	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	-370613	+	NM_007190 TSC_hg19_v1_chr10_+_121652241 AB019435 AK021846 AK314592 AK001135 AK001135 AK301517 BC063800 BC063800 BC002540 AF116723 BX649119 BX649119 AB384691 CU687818 BT006755	-935063	+	AK023143 TSC_hg19_v1_chr10_-_121632359 BC004183 BC007219 NM_024834	-954912	-	NM_018117 TSC_hg19_v1_chr10_+_122610771	23476	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	23643	+	AB084153 EF057068 EU826598 EU826599 EU826600 EU826601 AB587574 M55614 Z71929 X56191 NM_001144913 NM_001144914	766153	-	NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##NM_007190|SEC23IP|11196|SEC23 interacting protein##AB019435|SEC23IP|11196|SEC23 interacting protein##AK021846|SEC23IP|11196|SEC23 interacting protein##AK314592|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK301517|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC002540|SEC23IP|11196|SEC23 interacting protein##AF116723|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BT006755|SEC23IP|11196|SEC23 interacting protein##AK023143|MCMBP|79892|minichromosome maintenance complex binding protein##BC004183|MCMBP|79892|minichromosome maintenance complex binding protein##BC007219|MCMBP|79892|minichromosome maintenance complex binding protein##NM_024834|MCMBP|79892|minichromosome maintenance complex binding protein##NM_018117|WDR11|55717|WD repeat domain 11##BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11##AB084153|FGFR2|2263|fibroblast growth factor receptor 2##EF057068|FGFR2|2263|fibroblast growth factor receptor 2##EU826598|FGFR2|2263|fibroblast growth factor receptor 2##EU826599|FGFR2|2263|fibroblast growth factor receptor 2##EU826600|FGFR2|2263|fibroblast growth factor receptor 2##EU826601|FGFR2|2263|fibroblast growth factor receptor 2##M55614|FGFR2|2263|fibroblast growth factor receptor 2##Z71929|FGFR2|2263|fibroblast growth factor receptor 2##X56191|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144913|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144914|FGFR2|2263|fibroblast growth factor receptor 2	0.0	0.0	
chr10	62900679	62900819	reg1007908.p1	5.171	+	AK075129 BC093035 TSC_hg19_v1_chr10_-_62761269	-139509	-	BC041791 AB018283 BC032848 TSC_hg19_v1_chr10_-_62704033 NM_001242359 NM_014836 AK307630	-196797	-	TSC_hg19_v1_chr10_+_62538253 BC107750 AK291939	-362478	+	BC042872 TSC_hg19_v1_chr10_-_63212971 AK125611	312210	-	CR749606 NM_178505	312458	-	BC041932 NM_173554	521969	+	AK075129|RHOBTB1|9886|Rho-related BTB domain containing 1##BC093035|RHOBTB1|9886|Rho-related BTB domain containing 1##BC041791|RHOBTB1|9886|Rho-related BTB domain containing 1##AB018283|RHOBTB1|9886|Rho-related BTB domain containing 1##BC032848|RHOBTB1|9886|Rho-related BTB domain containing 1##NM_001242359|RHOBTB1|9886|Rho-related BTB domain containing 1##NM_014836|RHOBTB1|9886|Rho-related BTB domain containing 1##AK307630|RHOBTB1|9886|Rho-related BTB domain containing 1##BC107750|CDK1|983|cyclin-dependent kinase 1##AK291939|CDK1|983|cyclin-dependent kinase 1##BC042872|TMEM26|219623|transmembrane protein 26##AK125611|TMEM26|219623|transmembrane protein 26##CR749606|TMEM26|219623|transmembrane protein 26##NM_178505|TMEM26|219623|transmembrane protein 26##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107	0.0	0.088099	
chr15	99552021	99552122	reg1006989.p1	5.171	+	AK058162 NM_001167902	-1048	-	BC104743 BC104744 BC105686 NM_001102612	-3234	-	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	-359315	+	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	93169	+	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	237635	-	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	239345	-	AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23	0.994211	0.0	denovo_WM_7:31:0.768
chr17	62915863	62916019	reg1009861.p2	5.171	+	TSC_hg19_v1_chr17_-_62915587 AK294371	-345	-	AB011135 NM_199340	-1039	-	AB384498 TSC_hg19_v1_chr17_-_62893379 BC043145 BC048966	-22550	-	TSC_hg19_v1_chr17_-_62971685 BX537538 AK056627 BC063466 AK311317	55679	-	TSC_hg19_v1_chr17_-_63009302 AK026902	93365	-	TSC_hg19_v1_chr17_-_63052724 AB528470 AF493902 CU691408 DQ893572 DQ894448 AK313672	136777	-	AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AB011135|LRRC37A3|374819|leucine rich repeat containing 37, member A3##NM_199340|LRRC37A3|374819|leucine rich repeat containing 37, member A3##BC043145|LRRC37A3|374819|leucine rich repeat containing 37, member A3##BC048966|LRRC37A3|374819|leucine rich repeat containing 37, member A3##BX537538|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK056627|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##BC063466|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK311317|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK026902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AF493902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ893572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ894448|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AK313672|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13	0.948758	0.0	denovo_WM_7:21:0.949
chr19	9937791	9937953	reg1011192.p1	5.171	+	BC001586 AK000195 NM_017703 TSC_hg19_v1_chr19_-_9929754 AK093760 AK027004	-8147	-	TSC_hg19_v1_chr19_-_9929504 BX647073	-8360	-	CU674772 TSC_hg19_v1_chr19_-_9929496	-8380	-	NM_001048241 TSC_hg19_v1_chr19_+_9938580 AK128885 AK311889 NM_024292	695	+	TSC_hg19_v1_chr19_+_9938597 AK309258 AF313915 BC007053 BC110839	741	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	8079	+	BC001586|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK000195|FBXL12|54850|F-box and leucine-rich repeat protein 12##NM_017703|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK093760|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK027004|FBXL12|54850|F-box and leucine-rich repeat protein 12##BX647073|FBXL12|54850|F-box and leucine-rich repeat protein 12##NM_001048241|UBL5|59286|ubiquitin-like 5##AK128885|UBL5|59286|ubiquitin-like 5##AK311889|UBL5|59286|ubiquitin-like 5##NM_024292|UBL5|59286|ubiquitin-like 5##AK309258|UBL5|59286|ubiquitin-like 5##AF313915|UBL5|59286|ubiquitin-like 5##BC007053|UBL5|59286|ubiquitin-like 5##BC110839|UBL5|59286|ubiquitin-like 5##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1	0.994275	0.0	denovo_WM_7:-45:0.302	denovo_WM_7:-46:0.302	denovo_WM_7:-47:0.302
chr5	158598441	158598554	reg1009870.p2	5.171	+	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	-71755	-	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	-72040	-	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1312407	-	AK304228 NM_001199382	36151	-	AK056513 NM_144726	36336	-	AK311433 AK304435 NM_001199381	36612	-	BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145##AK056513|RNF145|153830|ring finger protein 145##NM_144726|RNF145|153830|ring finger protein 145##AK311433|RNF145|153830|ring finger protein 145##AK304435|RNF145|153830|ring finger protein 145##NM_001199381|RNF145|153830|ring finger protein 145	0.0	0.0	
chr7	63765756	63765936	reg1001181.p2	5.171	+	BC033523 NM_153363	-76995	+	NM_001159524	-98266	+	NM_001159522	-260026	+	NM_001170905	7339	+	TSC_hg19_v1_chr7_+_63774393 BC031335 AK301806	8546	+	AB529206 EU832109 EU832203 TSC_hg19_v1_chr7_-_64023424 AK131240	257532	-	BC033523|ZNF679|168417|zinc finger protein 679##NM_153363|ZNF679|168417|zinc finger protein 679##NM_001159524|ZNF735|730291|zinc finger protein 735##NM_001159522|ZNF727|442319|zinc finger protein 727##NM_001170905|ZNF736|728927|zinc finger protein 736##BC031335|ZNF736|728927|zinc finger protein 736##AK301806|ZNF736|728927|zinc finger protein 736##EU832109|ZNF680|340252|zinc finger protein 680##EU832203|ZNF680|340252|zinc finger protein 680##AK131240|ZNF680|340252|zinc finger protein 680	0.989093	0.0	
chr12	82349588	82349700	reg1006507.p2	5.170	+	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-196535	-	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	-197273	-	AK294505 AK297372 AK299853 NM_001220477 NM_001220478	-357590	-	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	402532	-	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	402665	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	731056	+	AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.0	0.0	
chr12	85818346	85818457	reg1008397.p2	5.170	+	U31986 TSC_hg19_v1_chr12_+_85673999 BC010923 NM_006982	-144442	+	AK022365 NM_001079910 BC005399 BC093088 AK307799	-388278	+	AK126325 NM_001100917	-388347	-	DQ890787 DQ893943 AF056209 TSC_hg19_v1_chr12_-_86230094 BC031589	411644	-	AK022089 TSC_hg19_v1_chr12_-_86230188 NM_005447	411836	-	AK312066 NM_006183 BC010918 AF157682 U91618 AB587429 CR541936 CU679849	449725	+	U31986|ALX1|8092|ALX homeobox 1##BC010923|ALX1|8092|ALX homeobox 1##NM_006982|ALX1|8092|ALX homeobox 1##AK022365|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##NM_001079910|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##BC005399|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##BC093088|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##AK307799|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##AK126325|TSPAN19|144448|tetraspanin 19##NM_001100917|TSPAN19|144448|tetraspanin 19##DQ890787|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##DQ893943|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AF056209|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##BC031589|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AK022089|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##NM_005447|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AK312066|NTS|4922|neurotensin##NM_006183|NTS|4922|neurotensin##BC010918|NTS|4922|neurotensin##AF157682|NTS|4922|neurotensin##U91618|NTS|4922|neurotensin##CR541936|NTS|4922|neurotensin	0.0	0.0	
chr22	41801645	41801790	reg1009061.p1	5.170	+	TSC_hg19_v1_chr22_+_41777945 BC042476 NM_003216 BC039258 U44059 AK314906 AK295595 HM370396 CR456592 CU013192 CU013480 DQ890611 DQ893781 CR541827 CU691698 U06935	-23689	+	TSC_hg19_v1_chr22_+_41763458 NM_001145398 AK091916 AB051442 AB385204	-38301	+	TSC_hg19_v1_chr22_+_41697583 AF188530 AK023849	-104067	+	TSC_hg19_v1_chr22_-_41842432 CR456594	40738	-	TSC_hg19_v1_chr22_-_41842785 BC028919 AB051450 BC038957	41065	-	TSC_hg19_v1_chr22_-_41842881 NM_016272	41222	-	BC042476|TEF|7008|thyrotrophic embryonic factor##NM_003216|TEF|7008|thyrotrophic embryonic factor##BC039258|TEF|7008|thyrotrophic embryonic factor##U44059|TEF|7008|thyrotrophic embryonic factor##AK314906|TEF|7008|thyrotrophic embryonic factor##AK295595|TEF|7008|thyrotrophic embryonic factor##HM370396|TEF|7008|thyrotrophic embryonic factor##CR456592|TEF|7008|thyrotrophic embryonic factor##CU013192|TEF|7008|thyrotrophic embryonic factor##CU013480|TEF|7008|thyrotrophic embryonic factor##DQ890611|TEF|7008|thyrotrophic embryonic factor##DQ893781|TEF|7008|thyrotrophic embryonic factor##CR541827|TEF|7008|thyrotrophic embryonic factor##U06935|TEF|7008|thyrotrophic embryonic factor##NM_001145398|TEF|7008|thyrotrophic embryonic factor##AK091916|TEF|7008|thyrotrophic embryonic factor##AB051442|TEF|7008|thyrotrophic embryonic factor##AF188530|ZC3H7B|23264|zinc finger CCCH-type containing 7B##AK023849|ZC3H7B|23264|zinc finger CCCH-type containing 7B##CR456594|TOB2|10766|transducer of ERBB2, 2##BC028919|TOB2|10766|transducer of ERBB2, 2##AB051450|TOB2|10766|transducer of ERBB2, 2##BC038957|TOB2|10766|transducer of ERBB2, 2##NM_016272|TOB2|10766|transducer of ERBB2, 2	0.548628	0.0	denovo_WM_7:-106:0.449	denovo_WM_7:-107:0.449
chr8	28331837	28332017	reg1009445.p2	5.170	+	AK002050 AK023418 NM_018660 AB057659 AB073627	-87966	-	BC001237 TSC_hg19_v1_chr8_-_28243694	-88285	-	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-157202	+	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	15852	-	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	19838	+	TSC_hg19_v1_chr8_+_28559032 AB011091	227148	+	AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC001237|ZNF395|55893|zinc finger protein 395##NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3	3.354316	0.0	denovo_WM_7:-17:0.550	denovo_WM_7:-37:0.271	denovo_WM_7:-40:0.224	denovo_WM_7:-63:0.210	denovo_WM_7:-85:0.216
chr20	30956982	30957116	reg1008994.p2	5.169	+	TSC_hg19_v1_chr20_+_30946787 AK122923	-10223	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	-10879	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	-91563	+	AB023195 TSC_hg19_v1_chr20_+_31017235	60162	+	TSC_hg19_v1_chr20_+_31037448 AL080086	80453	+	AK056286 TSC_hg19_v1_chr20_-_31071290 NM_080616	114216	-	AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##AB023195|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK056286|C20orf112|140688|chromosome 20 open reading frame 112##NM_080616|C20orf112|140688|chromosome 20 open reading frame 112	0.966078	0.0	denovo_WM_7:13:0.723
chr21	45632369	45632490	reg1010163.p2	5.169	+	TSC_hg19_v1_chr21_+_45553564 D86062 BC003587 D86061	-78868	+	TSC_hg19_v1_chr21_+_45553491 NM_004649 NM_198155 U53003 BC002370 Y07572	-78924	+	TSC_hg19_v1_chr21_+_45527269 U53346 X95263 BC013309 BC014988	-105130	+	AF216749 CU687930 AB528572 AF199028 BC064637 AF289028 TSC_hg19_v1_chr21_-_45660825 AB014553 NM_015259	28337	-	TSC_hg19_v1_chr21_-_45660850 AK090492 AK290192 AK294031 AK311496 AK314369 AX746477	28428	-	AF194032 NM_013369 NM_175867	49669	-	D86062|C21orf33|8209|chromosome 21 open reading frame 33##BC003587|C21orf33|8209|chromosome 21 open reading frame 33##D86061|C21orf33|8209|chromosome 21 open reading frame 33##NM_004649|C21orf33|8209|chromosome 21 open reading frame 33##NM_198155|C21orf33|8209|chromosome 21 open reading frame 33##U53003|C21orf33|8209|chromosome 21 open reading frame 33##BC002370|C21orf33|8209|chromosome 21 open reading frame 33##Y07572|C21orf33|8209|chromosome 21 open reading frame 33##U53346|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##X95263|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC013309|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##BC014988|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##AF216749|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF199028|ICOSLG|23308|inducible T-cell co-stimulator ligand##BC064637|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF289028|ICOSLG|23308|inducible T-cell co-stimulator ligand##AB014553|ICOSLG|23308|inducible T-cell co-stimulator ligand##NM_015259|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK090492|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK290192|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK294031|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK311496|ICOSLG|23308|inducible T-cell co-stimulator ligand##AK314369|ICOSLG|23308|inducible T-cell co-stimulator ligand##AF194032|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_013369|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like##NM_175867|DNMT3L|29947|DNA (cytosine-5-)-methyltransferase 3-like	0.0	0.0	
chr10	17658582	17658680	reg1012274.p1	5.168	+	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	-162266	-	TSC_hg19_v1_chr10_-_17496178 AB062101 AJ621583 NM_001004470	-162417	-	TSC_hg19_v1_chr10_-_17271978 BC078172	-386645	-	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	742	-	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	27599	+	NM_001098844 BC157856	135623	+	BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AB062101|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AJ621583|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001004470|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236	0.999819	0.0	
chr10	3910621	3910738	reg1007130.p1	5.168	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-83170	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-83368	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-695674	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	957739	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1094835	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1094944	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.998801	0.0	denovo_WM_7:25:0.307	denovo_WM_7:26:0.307	denovo_WM_7:27:0.307
chr20	48227757	48227937	reg1010590.p2	5.168	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-43158	-	BC110572 BC110573 NM_004975	-128668	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-332652	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	102383	-	AB004550 TSC_hg19_v1_chr20_-_48330359	102509	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	102619	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.0	0.052314	
chr9	126100469	126100604	reg1007490.p1	5.168	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-69648	-	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	-69716	-	TSC_hg19_v1_chr9_-_125941308 BC002693	-159216	-	NM_173689 AK123000 DQ426866 AY720432	17957	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	591775	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	673347	+	AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2	0.995286	0.0	
chr9	45437113	45437293	reg1004238.p1	5.168	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1752360	+	NM_001145196	-1806474	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-2303716	-	TSC_hg19_v1_chr9_+_45441926 BC006438	4723	+	BC040528 NM_001113541 NM_015667	20072406	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21020098	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.997986	0.0	
chr11	47543389	47543519	reg1011105.p2	5.167	+	BC031079 NM_198700	-27382	-	AK304430 AJ007988 DQ893717 AF248648 NM_001025596 NM_001172640 AF267533 AF267534	-32907	-	AK310002 BC004196 Z33905 AF449218 NM_005055 NM_032645	-72746	-	AB210019 NM_001172639	2085	-	TSC_hg19_v1_chr11_-_47574683 BC036782 U63289	31189	-	TSC_hg19_v1_chr11_-_47574804 NM_006560	31331	-	BC031079|CELF1|10658|CUGBP, Elav-like family member 1##NM_198700|CELF1|10658|CUGBP, Elav-like family member 1##AK304430|CELF1|10658|CUGBP, Elav-like family member 1##AJ007988|CELF1|10658|CUGBP, Elav-like family member 1##DQ893717|CELF1|10658|CUGBP, Elav-like family member 1##AF248648|CELF1|10658|CUGBP, Elav-like family member 1##NM_001025596|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172640|CELF1|10658|CUGBP, Elav-like family member 1##AF267533|CELF1|10658|CUGBP, Elav-like family member 1##AF267534|CELF1|10658|CUGBP, Elav-like family member 1##AK310002|RAPSN|5913|receptor-associated protein of the synapse##BC004196|RAPSN|5913|receptor-associated protein of the synapse##Z33905|RAPSN|5913|receptor-associated protein of the synapse##AF449218|RAPSN|5913|receptor-associated protein of the synapse##NM_005055|RAPSN|5913|receptor-associated protein of the synapse##NM_032645|RAPSN|5913|receptor-associated protein of the synapse##AB210019|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172639|CELF1|10658|CUGBP, Elav-like family member 1##BC036782|CELF1|10658|CUGBP, Elav-like family member 1##U63289|CELF1|10658|CUGBP, Elav-like family member 1##NM_006560|CELF1|10658|CUGBP, Elav-like family member 1	0.997127	0.0	denovo_WM_7:19:0.976
chr1	243477220	243477400	reg1010799.p1	5.167	+	TSC_hg19_v1_chr1_+_243419405 AK297105 AF250731	-57875	+	BC032454 TSC_hg19_v1_chr1_+_243419371 AK299249	-57939	+	TSC_hg19_v1_chr1_+_243419357 AK299212	-57955	+	AF135794 AB463341 AM392791 AM392849 AJ245709 AF124141 AK308052 BC020479 AF085234 AY005799 BC121154 NM_005465 NM_181690	529217	-	AL117525 NM_001206729	529575	-	TSC_hg19_v1_chr1_+_244214553 NM_205768	737246	+	AK297105|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF250731|SDCCAG8|10806|serologically defined colon cancer antigen 8##BC032454|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299249|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299212|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF135794|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392791|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392849|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AJ245709|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF124141|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK308052|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC020479|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF085234|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AY005799|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC121154|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_005465|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_181690|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_205768|ZNF238|10472|zinc finger protein 238	0.0	0.0	
chr2	172387546	172387646	reg1005916.p2	5.167	+	TSC_hg19_v1_chr2_+_172379020 NM_001127383 NM_024843 AK128495 AK316588 AL136693 BC016900 AK291731 AK027115 AK225459 BC065290 HQ257890	-8641	+	AK301485 TSC_hg19_v1_chr2_+_172378762	-8837	+	TSC_hg19_v1_chr2_-_172374248 AB055776	-13350	-	TSC_hg19_v1_chr2_+_172543981 BX537412 AK055491 NM_001378 AK225759 BC091498 AY037160 AK308008 AK298561	156428	+	TSC_hg19_v1_chr2_+_172544264 AK096579 AK075323 AF250307 BC109375 AF134477 AK316119 BC015038	156695	+	AB527259 DQ891540 EU176607 TSC_hg19_v1_chr2_-_172750755 AK091071 BC016932 AJ496568 Y14494 AK022828 AK294638 NM_003705	363187	-	NM_001127383|CYBRD1|79901|cytochrome b reductase 1##NM_024843|CYBRD1|79901|cytochrome b reductase 1##AK128495|CYBRD1|79901|cytochrome b reductase 1##AK316588|CYBRD1|79901|cytochrome b reductase 1##AL136693|CYBRD1|79901|cytochrome b reductase 1##BC016900|CYBRD1|79901|cytochrome b reductase 1##AK291731|CYBRD1|79901|cytochrome b reductase 1##AK027115|CYBRD1|79901|cytochrome b reductase 1##AK225459|CYBRD1|79901|cytochrome b reductase 1##BC065290|CYBRD1|79901|cytochrome b reductase 1##HQ257890|CYBRD1|79901|cytochrome b reductase 1##AK301485|CYBRD1|79901|cytochrome b reductase 1##BX537412|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK055491|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##NM_001378|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK225759|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC091498|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AY037160|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK308008|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK298561|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK096579|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK075323|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AF250307|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC109375|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AF134477|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##AK316119|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##BC015038|DYNC1I2|1781|dynein, cytoplasmic 1, intermediate chain 2##DQ891540|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##EU176607|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK091071|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##BC016932|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AJ496568|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##Y14494|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK022828|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##AK294638|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12##NM_003705|SLC25A12|8604|solute carrier family 25 (mitochondrial carrier, Aralar), member 12	1.831205	0.0	denovo_WM_7:76:0.236	denovo_WM_7:77:0.236	denovo_WM_7:78:0.236	denovo_WM_7:79:0.236	denovo_WM_7:-87:0.304	denovo_WM_7:-88:0.496
chr2	216543304	216543445	reg1010386.p2	5.167	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-242592	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-242854	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-253402	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	334962	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	403170	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	403318	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.880959	0.0	denovo_WM_7:36:0.862
chr13	99777347	99777451	reg1009270.p1	5.166	+	BC136274 BC171753 BC146814 AF527605 NM_001130049 NM_015296 TSC_hg19_v1_chr13_-_99738723	-38708	-	AB028981 TSC_hg19_v1_chr13_-_99630287 CR936820 AK126492 NM_001130048 NM_001130050	-147109	-	BC096327 BC096328 BC096329 BC099651 AF043233 AY634368 U13173 U21936 NM_005073	-372494	-	AK290342 NM_001144072	75279	+	TSC_hg19_v1_chr13_-_99852951 BC043515 AK097488	75568	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	75720	+	BC136274|DOCK9|23348|dedicator of cytokinesis 9##BC171753|DOCK9|23348|dedicator of cytokinesis 9##BC146814|DOCK9|23348|dedicator of cytokinesis 9##AF527605|DOCK9|23348|dedicator of cytokinesis 9##NM_001130049|DOCK9|23348|dedicator of cytokinesis 9##NM_015296|DOCK9|23348|dedicator of cytokinesis 9##AB028981|DOCK9|23348|dedicator of cytokinesis 9##CR936820|DOCK9|23348|dedicator of cytokinesis 9##AK126492|DOCK9|23348|dedicator of cytokinesis 9##NM_001130048|DOCK9|23348|dedicator of cytokinesis 9##NM_001130050|DOCK9|23348|dedicator of cytokinesis 9##BC096327|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##BC096328|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##BC096329|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##BC099651|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##AF043233|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##AY634368|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##U13173|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##U21936|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##NM_005073|SLC15A1|6564|solute carrier family 15 (oligopeptide transporter), member 1##AK290342|UBAC2|337867|UBA domain containing 2##NM_001144072|UBAC2|337867|UBA domain containing 2##BC043515|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK097488|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2	0.093576	0.0	
chr7	74057395	74057552	reg1001704.p1	5.166	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-189038	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-189165	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-189309	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	14548	+	TSC_hg19_v1_chr7_+_74072046 BC070484	14571	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	14649	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.99204	0.0	denovo_WM_7:-93:0.837
chr10	115639639	115639813	reg1010542.p1	5.165	+	TSC_hg19_v1_chr10_+_115614419 NM_198514 AK090631 AX746547	-25307	+	D42045 NM_014881 AK307187	-25810	-	BC037870 FJ236306 NM_182601	-115149	+	NM_000684 J03019	164083	+	TSC_hg19_v1_chr10_-_115933963 BC100670 BC103499 BC103504 BC105632 BC152306 BC107430 BC070368 BX537964 AK307517 AK092620 AX747632 BC020842 BC030557	294206	-	NM_018017	294637	-	NM_198514|NHLRC2|374354|NHL repeat containing 2##AK090631|NHLRC2|374354|NHL repeat containing 2##D42045|DCLRE1A|9937|DNA cross-link repair 1A##NM_014881|DCLRE1A|9937|DNA cross-link repair 1A##BC037870|C10orf81|79949|chromosome 10 open reading frame 81##FJ236306|C10orf81|79949|chromosome 10 open reading frame 81##NM_182601|C10orf81|79949|chromosome 10 open reading frame 81##NM_000684|ADRB1|153|adrenergic, beta-1-, receptor##J03019|ADRB1|153|adrenergic, beta-1-, receptor##BC100670|C10orf118|55088|chromosome 10 open reading frame 118##BC103499|C10orf118|55088|chromosome 10 open reading frame 118##BC103504|C10orf118|55088|chromosome 10 open reading frame 118##BC105632|C10orf118|55088|chromosome 10 open reading frame 118##BC152306|C10orf118|55088|chromosome 10 open reading frame 118##BC107430|C10orf118|55088|chromosome 10 open reading frame 118##BC070368|C10orf118|55088|chromosome 10 open reading frame 118##BX537964|C10orf118|55088|chromosome 10 open reading frame 118##AK307517|C10orf118|55088|chromosome 10 open reading frame 118##AK092620|C10orf118|55088|chromosome 10 open reading frame 118##BC020842|C10orf118|55088|chromosome 10 open reading frame 118##BC030557|C10orf118|55088|chromosome 10 open reading frame 118##NM_018017|C10orf118|55088|chromosome 10 open reading frame 118	0.0	0.0	
chr19	6038338	6038467	reg1007892.p1	5.165	+	AK299856 TSC_hg19_v1_chr19_-_5978306 NM_003624 NM_007320 NM_007322	-60118	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	-60251	-	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	-60290	-	TSC_hg19_v1_chr19_-_6110512 AK291196 BC071571 X76091	72121	-	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	72210	-	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	97351	+	AK299856|RANBP3|8498|RAN binding protein 3##NM_003624|RANBP3|8498|RAN binding protein 3##NM_007320|RANBP3|8498|RAN binding protein 3##NM_007322|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK291196|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC071571|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##X76091|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2	0.989549	0.0	
chr7	148942441	148942580	reg1009759.p1	5.165	+	TSC_hg19_v1_chr7_+_148936741 AK074821 NM_012256 BC022785 EU446738 CU692712	-5716	+	D30612 TSC_hg19_v1_chr7_+_148892683 NM_003575 AK299280 BC073805 AK316282 AB587508 BC055287 BC041704	-49821	+	TSC_hg19_v1_chr7_+_148844772 AY049744 AB527270 CU692152	-97751	+	TSC_hg19_v1_chr7_+_148959286 AK131504 NM_001195220 BC131569 AB528912	16810	+	AK098351 AK310453 AK310396 TSC_hg19_v1_chr7_+_148982401 AK303492	39876	+	TSC_hg19_v1_chr7_-_149157908 AB033111 NM_015694	215449	-	AK074821|ZNF212|7988|zinc finger protein 212##NM_012256|ZNF212|7988|zinc finger protein 212##BC022785|ZNF212|7988|zinc finger protein 212##EU446738|ZNF212|7988|zinc finger protein 212##D30612|ZNF282|8427|zinc finger protein 282##NM_003575|ZNF282|8427|zinc finger protein 282##AK299280|ZNF282|8427|zinc finger protein 282##BC073805|ZNF282|8427|zinc finger protein 282##AK316282|ZNF282|8427|zinc finger protein 282##BC055287|ZNF282|8427|zinc finger protein 282##BC041704|ZNF282|8427|zinc finger protein 282##AY049744|ZNF398|57541|zinc finger protein 398##NM_001195220|ZNF783|100289678|zinc finger family member 783##AK098351|LOC155060|155060|AI894139 pseudogene##AK310453|LOC155060|155060|AI894139 pseudogene##AK310396|LOC155060|155060|AI894139 pseudogene##AK303492|LOC155060|155060|AI894139 pseudogene##AB033111|ZNF777|27153|zinc finger protein 777##NM_015694|ZNF777|27153|zinc finger protein 777	0.99218	0.0	denovo_WM_7:-50:0.305	denovo_WM_7:-51:0.305	denovo_WM_7:-52:0.305
chr8	54795156	54795279	reg1010732.p1	5.165	+	TSC_hg19_v1_chr8_+_54793579 AF060877 HQ257937 BC015614	-1655	+	TSC_hg19_v1_chr8_+_54793431 AK094503 BC063490 NM_003702 BC054867 BC018618 BC031328	-1765	+	AY046538 NM_170587 AF366054 AF366055 AF366056	-30804	+	BT019995 CR542221 AB464783 AK290454 TSC_hg19_v1_chr8_-_54934848 X62585 BC072460 X57198 AK026617 AK297957 BX538034 AK297729	139550	-	TSC_hg19_v1_chr8_-_54934851 M81601	139637	-	TSC_hg19_v1_chr8_-_54934990 NM_006756 NM_201437	139802	-	AF060877|RGS20|8601|regulator of G-protein signaling 20##HQ257937|RGS20|8601|regulator of G-protein signaling 20##BC015614|RGS20|8601|regulator of G-protein signaling 20##AK094503|RGS20|8601|regulator of G-protein signaling 20##BC063490|RGS20|8601|regulator of G-protein signaling 20##NM_003702|RGS20|8601|regulator of G-protein signaling 20##BC018618|RGS20|8601|regulator of G-protein signaling 20##BC031328|RGS20|8601|regulator of G-protein signaling 20##AY046538|RGS20|8601|regulator of G-protein signaling 20##NM_170587|RGS20|8601|regulator of G-protein signaling 20##AF366054|RGS20|8601|regulator of G-protein signaling 20##AF366055|RGS20|8601|regulator of G-protein signaling 20##AF366056|RGS20|8601|regulator of G-protein signaling 20##BT019995|TCEA1|6917|transcription elongation factor A (SII), 1##CR542221|TCEA1|6917|transcription elongation factor A (SII), 1##AK290454|TCEA1|6917|transcription elongation factor A (SII), 1##X62585|TCEA1|6917|transcription elongation factor A (SII), 1##BC072460|TCEA1|6917|transcription elongation factor A (SII), 1##X57198|TCEA1|6917|transcription elongation factor A (SII), 1##AK026617|TCEA1|6917|transcription elongation factor A (SII), 1##AK297957|TCEA1|6917|transcription elongation factor A (SII), 1##BX538034|TCEA1|6917|transcription elongation factor A (SII), 1##AK297729|TCEA1|6917|transcription elongation factor A (SII), 1##M81601|TCEA1|6917|transcription elongation factor A (SII), 1##NM_006756|TCEA1|6917|transcription elongation factor A (SII), 1##NM_201437|TCEA1|6917|transcription elongation factor A (SII), 1	0.993704	0.0	denovo_WM_7:-3:0.248	denovo_WM_7:-4:0.248	denovo_WM_7:-5:0.248	denovo_WM_7:-6:0.248
chr9	37284100	37284226	reg1008174.p2	5.165	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-163580	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-163655	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-163677	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	138543	+	BC010007 TSC_hg19_v1_chr9_-_37465267	181097	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	181232	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.01024	0.0	
chrX	1603099	1603279	reg1000485.p1	5.165	+	AK301844 NM_001173473	-30538	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-31388	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-92220	-	BC043610 GQ280263 NM_178129 AK126147	52849	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	107340	+	NM_004043 U11090	111158	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.0	0.0	
chrY	1553101	1553281	reg1000486.p1	5.165	+	AK301844 NM_001173473	-30540	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-31390	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-92222	-	BC043610 GQ280263 NM_178129 AK126147	52847	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	107338	+	NM_004043 U11090	111156	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.0	0.0	
chr9	981171	981279	reg1011404.p2	5.164	+	AF193873 TSC_hg19_v1_chr9_+_977425	-3820	+	NM_021240 BC113584 BC117245	-4260	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-139462	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	69119	+	TSC_hg19_v1_chr9_+_1050370 Y19052	69145	+	AF130729 NM_181872	69384	+	AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2	1.471103	0.0	denovo_WM_7:48:0.354	denovo_WM_7:49:0.357	denovo_WM_7:-56:0.569
chrX	19707434	19707565	reg1011638.p1	5.163	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-18443	-	NM_001001671	-174121	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-345417	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	110376	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	110413	-	TSC_hg19_v1_chrX_-_19905450 AY542305	197964	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chr20	48402453	48402633	reg1005428.p2	5.162	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-72077	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-72187	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-72313	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	26765	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	26875	+	AK289644 NM_001135773	127732	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	0.0	0.0	
chr20	48419102	48419271	reg1010563.p1	5.162	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-88720	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-88830	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-88956	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	10122	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	10232	+	AK289644 NM_001135773	111089	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	0.022613	0.0	
chr5	139557855	139558035	reg1006808.p1	5.162	+	TSC_hg19_v1_chr5_+_139554722 BC023982 BC013643 AK225992 AK311640 AK312045 AJ245877	-3174	+	TSC_hg19_v1_chr5_+_139554672 NM_032412	-3291	+	BC041380 NM_001007189	-52426	+	AB464063 TSC_hg19_v1_chr5_-_139682672	124719	-	AK315353 TSC_hg19_v1_chr5_-_139682676	124730	-	TSC_hg19_v1_chr5_-_139682680 BC011869 BC003620 BC006202 AK223394 NM_002622	124739	-	BC023982|C5orf32|84418|chromosome 5 open reading frame 32##BC013643|C5orf32|84418|chromosome 5 open reading frame 32##AK225992|C5orf32|84418|chromosome 5 open reading frame 32##AK312045|C5orf32|84418|chromosome 5 open reading frame 32##AJ245877|C5orf32|84418|chromosome 5 open reading frame 32##NM_032412|C5orf32|84418|chromosome 5 open reading frame 32##BC041380|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_001007189|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##AK315353|PFDN1|5201|prefoldin subunit 1##BC011869|PFDN1|5201|prefoldin subunit 1##BC003620|PFDN1|5201|prefoldin subunit 1##BC006202|PFDN1|5201|prefoldin subunit 1##AK223394|PFDN1|5201|prefoldin subunit 1##NM_002622|PFDN1|5201|prefoldin subunit 1	1.114237	0.0	
chr11	20408788	20408919	reg1008177.p1	5.161	+	AF092095 NM_001098523 U69161 AK223010 BC015358 AK222969 AF039103 EU446982 AB463744 CR456821	-23119	+	TSC_hg19_v1_chr11_+_20385346 BC002439 NM_001098522	-23490	+	TSC_hg19_v1_chr11_+_20385268 AK292092 NM_001098520	-23572	+	NM_001145166 NM_001145167 NM_005788 TSC_hg19_v1_chr11_+_20409136 BC064831 BC019339 AK129984	263	+	BC047226 TSC_hg19_v1_chr11_+_20409261 AK301449 AK298185 AK300591 BC037544 AB590779 EU831425 EU831518	407	+	NM_004211 AF085412	212094	+	AF092095|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098523|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##U69161|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK223010|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##BC015358|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK222969|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AF039103|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##EU446982|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##CR456821|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##BC002439|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098522|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK292092|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098520|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001145166|PRMT3|10196|protein arginine methyltransferase 3##NM_001145167|PRMT3|10196|protein arginine methyltransferase 3##NM_005788|PRMT3|10196|protein arginine methyltransferase 3##BC064831|PRMT3|10196|protein arginine methyltransferase 3##BC019339|PRMT3|10196|protein arginine methyltransferase 3##AK129984|PRMT3|10196|protein arginine methyltransferase 3##BC047226|PRMT3|10196|protein arginine methyltransferase 3##AK301449|PRMT3|10196|protein arginine methyltransferase 3##AK298185|PRMT3|10196|protein arginine methyltransferase 3##AK300591|PRMT3|10196|protein arginine methyltransferase 3##BC037544|PRMT3|10196|protein arginine methyltransferase 3##EU831425|PRMT3|10196|protein arginine methyltransferase 3##EU831518|PRMT3|10196|protein arginine methyltransferase 3##NM_004211|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AF085412|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5	0.0	0.985025	CTCF.p2:-64:0.985
chr17	43232522	43232637	reg1008314.p1	5.161	+	TSC_hg19_v1_chr17_+_43225936 BC006460	-6644	+	TSC_hg19_v1_chr17_+_43225841 AK023624 AB021179	-6728	+	NM_006460	-7896	+	AK056946 NM_144608	5684	+	TSC_hg19_v1_chr17_+_43299284 AY278319 NM_005892 BC111564	66781	+	AK096807 TSC_hg19_v1_chr17_-_43319268	86617	-	BC006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK023624|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AB021179|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##NM_006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK056946|HEXIM2|124790|hexamethylene bis-acetamide inducible 2##NM_144608|HEXIM2|124790|hexamethylene bis-acetamide inducible 2##AY278319|FMNL1|752|formin-like 1##NM_005892|FMNL1|752|formin-like 1##BC111564|FMNL1|752|formin-like 1	1.998799	0.0	denovo_WM_7:-38:0.739	denovo_WM_7:107:0.841
chr20	32006022	32006125	reg1010696.p1	5.161	+	TSC_hg19_v1_chr20_-_31989330 NM_016082 NM_016408	-16734	-	BC001215 TSC_hg19_v1_chr20_-_31989326 AF152097 BC050706 AK027449 AF161516 AK023992 AK222745 AK292075 AK295342 AK309906 AK314532 AY462283 AY462284	-16759	-	NM_033197 AK290243 AF364078 AK310964 TSC_hg19_v1_chr20_+_31871019 AK313176 BC008429 AY358595	-135089	+	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	25488	-	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	71763	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	71898	+	NM_016082|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016408|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC001215|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF152097|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC050706|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK027449|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF161516|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK023992|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK222745|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK292075|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK295342|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK309906|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK314532|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462283|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462284|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_033197|BPIFB1|92747|BPI fold containing family B, member 1##AK290243|BPIFB1|92747|BPI fold containing family B, member 1##AF364078|BPIFB1|92747|BPI fold containing family B, member 1##AK310964|BPIFB1|92747|BPI fold containing family B, member 1##AK313176|BPIFB1|92747|BPI fold containing family B, member 1##BC008429|BPIFB1|92747|BPI fold containing family B, member 1##AY358595|BPIFB1|92747|BPI fold containing family B, member 1##DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	0.999132	0.0	denovo_WM_7:0:0.239	denovo_WM_7:0:0.239	denovo_WM_7:-1:0.239	denovo_WM_7:1:0.239
chr2	192542860	192542979	reg1002991.p2	5.161	+	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	-57	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-432821	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-526612	-	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	168819	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	169052	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	516395	-	NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2	0.75116	0.0	denovo_WM_7:97:0.740
chr15	70390126	70390232	reg1009814.p2	5.160	+	BC015421 TSC_hg19_v1_chr15_-_70341948	-48270	-	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	-644958	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-682817	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	48	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	64	-	TSC_hg19_v1_chr15_-_70878946 BC040579	488765	-	BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##AK056793|LOC145694|145694|uncharacterized LOC145694##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	0.0	0.0	
chr20	30482983	30483100	reg1006647.p1	5.160	+	TSC_hg19_v1_chr20_+_30467627 BC036213 AK303963 AK302360 AK302806	-15428	+	AK093491 AX748163 NM_001008409 BC068593 BC104024 BC104025	-24509	+	BC056911 AK097430 NM_080611	-24626	-	TSC_hg19_v1_chr20_-_30539781 BC001856 AB528566	56719	-	TSC_hg19_v1_chr20_-_30539818 BC009334 AK312021	56785	-	TSC_hg19_v1_chr20_-_30539856 NM_030815 AY286301	56830	-	BC036213|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK303963|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK302360|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK302806|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK093491|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##NM_001008409|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC068593|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC104024|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC104025|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC056911|DUSP15|128853|dual specificity phosphatase 15##AK097430|C20orf57|83747|chromosome 20 open reading frame 57##NM_080611|DUSP15|128853|dual specificity phosphatase 15##BC001856|PDRG1|81572|p53 and DNA-damage regulated 1##BC009334|PDRG1|81572|p53 and DNA-damage regulated 1##AK312021|PDRG1|81572|p53 and DNA-damage regulated 1##NM_030815|PDRG1|81572|p53 and DNA-damage regulated 1##AY286301|PDRG1|81572|p53 and DNA-damage regulated 1	0.0	0.0	
chr2	158754288	158754421	reg1009961.p1	5.160	+	AK297765 AK313630 NM_001111067	-21997	-	BC033867 BC036748 NM_001105	-22732	-	BC022530 NM_001111032 NM_001111033 NM_145259 TSC_hg19_v1_chr2_-_158485400	-268957	-	BC033529 NM_001135098	97336	+	AK122743 NM_173355	204027	+	CU677295 BC105928 BC107596 BC107597 AK123220 AK058105 AF458588 BC015395 AK309246 TSC_hg19_v1_chr2_-_159313250 AK308783 AK311042 NM_001171637 NM_138803	558755	-	AK297765|ACVR1|90|activin A receptor, type I##AK313630|ACVR1|90|activin A receptor, type I##NM_001111067|ACVR1|90|activin A receptor, type I##BC033867|ACVR1|90|activin A receptor, type I##BC036748|ACVR1|90|activin A receptor, type I##NM_001105|ACVR1|90|activin A receptor, type I##BC022530|ACVR1C|130399|activin A receptor, type IC##NM_001111032|ACVR1C|130399|activin A receptor, type IC##NM_001111033|ACVR1C|130399|activin A receptor, type IC##NM_145259|ACVR1C|130399|activin A receptor, type IC##BC033529|UPP2|151531|uridine phosphorylase 2##NM_001135098|UPP2|151531|uridine phosphorylase 2##AK122743|UPP2|151531|uridine phosphorylase 2##NM_173355|UPP2|151531|uridine phosphorylase 2##BC105928|CCDC148|130940|coiled-coil domain containing 148##BC107596|CCDC148|130940|coiled-coil domain containing 148##BC107597|CCDC148|130940|coiled-coil domain containing 148##AK123220|CCDC148|130940|coiled-coil domain containing 148##AK058105|CCDC148|130940|coiled-coil domain containing 148##AF458588|CCDC148|130940|coiled-coil domain containing 148##BC015395|CCDC148|130940|coiled-coil domain containing 148##AK309246|CCDC148|130940|coiled-coil domain containing 148##AK308783|CCDC148|130940|coiled-coil domain containing 148##AK311042|CCDC148|130940|coiled-coil domain containing 148##NM_001171637|CCDC148|130940|coiled-coil domain containing 148##NM_138803|CCDC148|130940|coiled-coil domain containing 148	0.994558	0.0	
chr4	87632178	87632281	reg1010089.p1	5.160	+	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-116756	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-257906	-	NM_138980 NM_138982	-350855	-	AJ583502 BC107051 BC107052 EF437223 NM_197965	138112	-	BC016746 BC063410 NM_144645	181331	-	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	223986	+	AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##NM_138980|MAPK10|5602|mitogen-activated protein kinase 10##NM_138982|MAPK10|5602|mitogen-activated protein kinase 10##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1	0.998234	0.0	
chrX	47801291	47801471	reg1008419.p2	5.160	+	TSC_hg19_v1_chrX_+_47696322 BC039609	-105038	+	TSC_hg19_v1_chrX_+_47696313 AK126949 NM_007137	-105084	+	TSC_hg19_v1_chrX_-_47518553 AF083241 AK312072 AF092737 NM_004182 NM_153477	-282817	-	TSC_hg19_v1_chrX_-_47863389 BC114216 AK299325 AK122874 NM_001007088 NM_006962 NM_001178099	61972	-	AY358844 NM_205856	62352	+	NM_001079900 AF217622	65791	+	BC039609|ZNF81|347344|zinc finger protein 81##AK126949|ZNF81|347344|zinc finger protein 81##NM_007137|ZNF81|347344|zinc finger protein 81##AF083241|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK312072|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AF092737|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_004182|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_153477|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##BC114216|ZNF182|7569|zinc finger protein 182##AK299325|ZNF182|7569|zinc finger protein 182##AK122874|ZNF182|7569|zinc finger protein 182##NM_001007088|ZNF182|7569|zinc finger protein 182##NM_006962|ZNF182|7569|zinc finger protein 182##NM_001178099|ZNF182|7569|zinc finger protein 182##AY358844|SPACA5|389852|sperm acrosome associated 5##NM_205856|SPACA5|389852|sperm acrosome associated 5##NM_001079900|SPACA5B|729201|sperm acrosome associated 5B##AF217622|SPACA5|389852|sperm acrosome associated 5	0.999712	0.0	denovo_WM_7:10:0.298	denovo_WM_7:11:0.298	denovo_WM_7:12:0.298
chr11	82745498	82745678	reg1010150.p1	5.159	+	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	-132814	+	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	-134071	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	-300690	-	AK312323 TSC_hg19_v1_chr11_-_82782872	37285	-	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	37309	-	BC031316 TSC_hg19_v1_chr11_+_82783118	37530	+	NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AK312323|RAB30|27314|RAB30, member RAS oncogene family##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##BC031316|LOC100506233|100506233|uncharacterized LOC100506233	0.998876	0.0	denovo_WM_7:39:0.950
chr17	73342114	73342261	reg1010233.p2	5.159	+	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-56658	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-56715	-	TSC_hg19_v1_chr17_-_73267265 AF225422 NM_001242498 NM_020679	-74873	-	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	47590	-	AK091010 TSC_hg19_v1_chr17_-_73401721	59457	-	TSC_hg19_v1_chr17_-_73401738 BC000631	59547	-	AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AF225422|MIF4GD|57409|MIF4G domain containing##NM_001242498|MIF4GD|57409|MIF4G domain containing##NM_020679|MIF4GD|57409|MIF4G domain containing##AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2	0.990001	0.0	denovo_WM_7:64:0.243	denovo_WM_7:65:0.243	denovo_WM_7:66:0.243	denovo_WM_7:67:0.243
chr20	5751011	5751101	reg1009815.p1	5.159	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	-19990	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-159469	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-456020	-	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	141070	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	180067	-	AJ439063 NM_032485 NM_182802 AK297806 BC101054 BC101055 BC101056 BC101057 BC080656 AY158211 BC005170 AK314654	180427	+	AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AJ439063|MCM8|84515|minichromosome maintenance complex component 8##NM_032485|MCM8|84515|minichromosome maintenance complex component 8##NM_182802|MCM8|84515|minichromosome maintenance complex component 8##AK297806|MCM8|84515|minichromosome maintenance complex component 8##BC101054|MCM8|84515|minichromosome maintenance complex component 8##BC101055|MCM8|84515|minichromosome maintenance complex component 8##BC101056|MCM8|84515|minichromosome maintenance complex component 8##BC101057|MCM8|84515|minichromosome maintenance complex component 8##BC080656|MCM8|84515|minichromosome maintenance complex component 8##AY158211|MCM8|84515|minichromosome maintenance complex component 8##BC005170|MCM8|84515|minichromosome maintenance complex component 8##AK314654|MCM8|84515|minichromosome maintenance complex component 8	0.0	0.0	
chr6	2081780	2081894	reg1007596.p1	5.159	+	TSC_hg19_v1_chr6_+_1611545 BC169307	-470263	+	BC134421 NM_001453	-471157	+	NM_001452 U13220 AB463646	-691712	+	AF040260 NM_001253846	94387	-	CR541929 CR541947 DQ892789 DQ896036 AF042377 TSC_hg19_v1_chr6_-_2245809 AK130651 AK313953 BC000117 NM_001500	163961	-	TSC_hg19_v1_chr6_+_2245995 AK023629	164176	+	BC169307|FOXC1|2296|forkhead box C1##BC134421|FOXC1|2296|forkhead box C1##NM_001453|FOXC1|2296|forkhead box C1##NM_001452|FOXF2|2295|forkhead box F2##U13220|FOXF2|2295|forkhead box F2##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541929|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541947|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ892789|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ896036|GMDS|2762|GDP-mannose 4,6-dehydratase##AF042377|GMDS|2762|GDP-mannose 4,6-dehydratase##AK130651|GMDS|2762|GDP-mannose 4,6-dehydratase##AK313953|GMDS|2762|GDP-mannose 4,6-dehydratase##BC000117|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001500|GMDS|2762|GDP-mannose 4,6-dehydratase	0.012293	0.0	
chr9	117367505	117367685	reg1002552.p3	5.159	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	-17488	+	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	-17557	+	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	-99865	-	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	6174	+	NM_001199233	76773	-	AY434464 NM_001204344	187214	-	CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91##NM_001199233|LOC100505478|100505478|uncharacterized LOC100505478##AY434464|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001204344|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15	0.481373	0.0	
chr13	41019756	41019936	reg1008950.p1	5.158	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-789985	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-842484	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-842519	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	220866	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	325446	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	325486	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.0	0.0	
chr13	99164046	99164222	reg1001808.p1	5.158	+	TSC_hg19_v1_chr13_+_99058147 AF339817	-105928	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-334629	-	TSC_hg19_v1_chr13_+_98795717 AB008430 BC065020	-368416	+	AF083420 NM_003576	10161	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	64920	-	AF024636 AK297583 AK299140 TSC_hg19_v1_chr13_-_99229127	64988	-	EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##AB008430|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC065020|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24##AF024636|STK24|8428|serine/threonine kinase 24##AK297583|STK24|8428|serine/threonine kinase 24##AK299140|STK24|8428|serine/threonine kinase 24	0.99174	0.0	denovo_WM_7:29:0.331	denovo_WM_7:30:0.331	denovo_WM_7:31:0.331
chr7	101360646	101360826	reg1010602.p1	5.158	+	BC002778 NM_138403	-88161	-	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-354519	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-395698	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	98473	+	M74099 NM_181552	100145	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	567661	+	BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_020979|SH2B2|10603|SH2B adaptor protein 2	1.016165	0.0	
chr10	25209988	25210123	reg1012199.p1	5.157	+	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	-197449	-	AK307604 TSC_hg19_v1_chr10_-_25012174	-197882	-	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-454586	+	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	31477	-	CU693144 DQ892076 DQ895269 BC064597 AK095021 NM_145010 AY454125 AK292495 BC026165	94919	-	NM_024838 TSC_hg19_v1_chr10_+_25305540 AK125249 BC035132 BX647989	95495	+	AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##DQ892076|ENKUR|219670|enkurin, TRPC channel interacting protein##DQ895269|ENKUR|219670|enkurin, TRPC channel interacting protein##AK095021|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_145010|ENKUR|219670|enkurin, TRPC channel interacting protein##AY454125|ENKUR|219670|enkurin, TRPC channel interacting protein##AK292495|ENKUR|219670|enkurin, TRPC channel interacting protein##BC026165|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_024838|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##AK125249|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BC035132|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BX647989|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)	1.015583	0.0	denovo_WM_7:-23:0.662
chr1	151043658	151043783	reg1003292.p3	5.157	+	BC027033 NM_144618 TSC_hg19_v1_chr1_+_151043238 AK092230 AX747418 AK313606 AK301882	-536	+	TSC_hg19_v1_chr1_+_151032908 BC019253	-10811	+	AK057755 TSC_hg19_v1_chr1_+_151032886 BC007079 BC008445	-10834	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	75327	-	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	85410	+	TSC_hg19_v1_chr1_-_151138337 BX647911 NM_212551 AK298706 NM_001136543	94656	-	BC027033|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##NM_144618|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK092230|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK313606|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK301882|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##BC019253|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AK057755|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC007079|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC008445|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BX647911|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_212551|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##AK298706|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1##NM_001136543|LYSMD1|388695|LysM, putative peptidoglycan-binding, domain containing 1	0.0	0.998596	CTCF.p2:-22:0.999
chr3	17783234	17783414	reg1007960.p1	5.157	+	D86965 NM_014744	-926	-	AK310539 NM_001134381	-41813	-	BC036392 NM_015184	-808743	+	TSC_hg19_v1_chr3_-_17784106 NM_001134380	843	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	683473	-	BC001744 NM_001131010	696909	-	D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1	1.988812	0.0	denovo_WM_7:-7:0.658	denovo_WM_7:-8:0.332	denovo_WM_7:-22:0.326	denovo_WM_7:-23:0.651
chr7	73615381	73615506	reg1005356.p1	5.157	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	-26740	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	-26802	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-107926	+	NM_014146 NM_032463 NM_032464	8643	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	8839	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	8893	+	AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2	1.984802	0.0	
chr1	145916039	145916219	reg1011523.p1	5.156	+	NM_001097616	-32262	+	BT006679 DQ890650 DQ893830 AB528816 TSC_hg19_v1_chr1_-_145827047 BC003187 AK316371 BC146880 AF132947 U78723 BC067816 AB097024 AB097025 AK223223 AK299995 AK302266 AY358966 AK021758 AK297145 NM_001097612 NM_001097613	-89113	-	TSC_hg19_v1_chr1_+_145727712 AK313100 AK298269 BC006496 BC006518 AF012281	-188410	+	AF419617 NM_001101663	152115	-	BC136292 NM_183372 AL832622	166569	-	AJ224538 HQ257946 TSC_hg19_v1_chr1_-_146643798	727636	-	NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##BT006679|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##AK297145|GPR89A|653519|G protein-coupled receptor 89A##NM_001097612|GPR89A|653519|G protein-coupled receptor 89A##NM_001097613|GPR89A|653519|G protein-coupled receptor 89A##AK313100|PDZK1|5174|PDZ domain containing 1##AK298269|PDZK1|5174|PDZ domain containing 1##BC006496|PDZK1|5174|PDZ domain containing 1##BC006518|PDZK1|5174|PDZ domain containing 1##AF012281|PDZK1|5174|PDZ domain containing 1##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11##AL832622|NBPF24|728912|neuroblastoma breakpoint family, member 24##AJ224538|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##HQ257946|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit	0.986865	0.0	denovo_WM_7:38:0.987
chr12	27093973	27094153	reg1005257.p1	5.156	+	NM_001171887 NM_001171888 NM_015633 AK001534 TSC_hg19_v1_chr12_+_27091402 BC032143 AF161472	-2688	+	TSC_hg19_v1_chr12_-_27091213 NM_018164	-2833	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	-3154	-	TSC_hg19_v1_chr12_-_27167274 AK002031 AB032470 BC005176	73095	-	TSC_hg19_v1_chr12_-_27167318 AK023085	73258	-	TSC_hg19_v1_chr12_-_27167332 NM_016551	73272	-	NM_001171887|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_001171888|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_015633|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK001534|FGFR1OP2|26127|FGFR1 oncogene partner 2##BC032143|FGFR1OP2|26127|FGFR1 oncogene partner 2##AF161472|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK002031|TM7SF3|51768|transmembrane 7 superfamily member 3##AB032470|TM7SF3|51768|transmembrane 7 superfamily member 3##BC005176|TM7SF3|51768|transmembrane 7 superfamily member 3##AK023085|TM7SF3|51768|transmembrane 7 superfamily member 3##NM_016551|TM7SF3|51768|transmembrane 7 superfamily member 3	1.88099	0.0	denovo_WM_7:-8:0.476	denovo_WM_7:-9:0.411	denovo_WM_7:-36:0.714	denovo_WM_7:-37:0.209
chr1	42579536	42579665	reg1010892.p1	5.156	+	TSC_hg19_v1_chr1_-_42501606 BC046120	-77971	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	-195227	-	TSC_hg19_v1_chr1_-_42384357 BC040942	-195258	-	NM_007102 U34279 BC093781 Z50753 BC093779 BC069301	39496	+	M95174 M97496 NM_033553	50790	-	TSC_hg19_v1_chr1_-_42776761 AB463045	197161	-	BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_007102|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##U34279|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##BC093781|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##Z50753|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##BC093779|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##BC069301|GUCA2B|2981|guanylate cyclase activator 2B (uroguanylin)##M95174|GUCA2A|2980|guanylate cyclase activator 2A (guanylin)##M97496|GUCA2A|2980|guanylate cyclase activator 2A (guanylin)##NM_033553|GUCA2A|2980|guanylate cyclase activator 2A (guanylin)	0.996875	0.0	denovo_WM_7:-3:0.985
chr2	42186681	42186814	reg1011450.p1	5.156	+	AK124893 NM_001242815	-5805	-	Y12878 Y12885 AK291696 BX537482 NM_001112802	-1447175	-	Y13032 BX648299 TSC_hg19_v1_chr2_-_40679231	-1507525	-	TSC_hg19_v1_chr2_+_42275160 NM_138370	88385	+	AB528999 TSC_hg19_v1_chr2_+_42275979	89214	+	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	209828	+	AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##Y12878|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y12885|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK291696|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX537482|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112802|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y13032|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX648299|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4	0.997506	0.0	denovo_WM_7:34:0.527	denovo_WM_7:35:0.470
chr2	86431047	86431159	reg1008119.p2	5.156	+	NM_016622 NM_145644 TSC_hg19_v1_chr2_+_86426604 BC020651 AK074352 AK314555 AK314577 AF208849 AL832982 CU676602	-4519	+	NM_001100169 NM_001100170 NM_006839	-8211	-	TSC_hg19_v1_chr2_-_86422614 BX537369 L42572	-8448	-	AY562239 CR457301 CU687956 AK297201 TSC_hg19_v1_chr2_-_86564750 BC064846 AK294300 AK297359 AK297373 AK299334 AK023172 NM_001164731 NM_001164732 NM_022912	133630	-	AK297287 NM_001164730	134102	-	NM_018433	237167	+	NM_016622|MRPL35|51318|mitochondrial ribosomal protein L35##NM_145644|MRPL35|51318|mitochondrial ribosomal protein L35##BC020651|MRPL35|51318|mitochondrial ribosomal protein L35##AK074352|MRPL35|51318|mitochondrial ribosomal protein L35##AK314555|MRPL35|51318|mitochondrial ribosomal protein L35##AK314577|MRPL35|51318|mitochondrial ribosomal protein L35##AF208849|MRPL35|51318|mitochondrial ribosomal protein L35##AL832982|MRPL35|51318|mitochondrial ribosomal protein L35##NM_001100169|IMMT|10989|inner membrane protein, mitochondrial##NM_001100170|IMMT|10989|inner membrane protein, mitochondrial##NM_006839|IMMT|10989|inner membrane protein, mitochondrial##BX537369|IMMT|10989|inner membrane protein, mitochondrial##L42572|IMMT|10989|inner membrane protein, mitochondrial##AY562239|REEP1|65055|receptor accessory protein 1##CR457301|REEP1|65055|receptor accessory protein 1##AK297201|REEP1|65055|receptor accessory protein 1##BC064846|REEP1|65055|receptor accessory protein 1##AK294300|REEP1|65055|receptor accessory protein 1##AK297359|REEP1|65055|receptor accessory protein 1##AK297373|REEP1|65055|receptor accessory protein 1##AK299334|REEP1|65055|receptor accessory protein 1##AK023172|REEP1|65055|receptor accessory protein 1##NM_001164731|REEP1|65055|receptor accessory protein 1##NM_001164732|REEP1|65055|receptor accessory protein 1##NM_022912|REEP1|65055|receptor accessory protein 1##AK297287|REEP1|65055|receptor accessory protein 1##NM_001164730|REEP1|65055|receptor accessory protein 1##NM_018433|KDM3A|55818|lysine (K)-specific demethylase 3A	0.192433	0.0	
chr3	150323870	150324018	reg1008311.p1	5.156	+	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	-2789	+	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	-2968	-	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-59358	+	AK093375 AX748085 BC036239 BC029577 NM_152394	97785	-	TSC_hg19_v1_chr3_-_150480902 AK223565	156955	-	TSC_hg19_v1_chr3_-_150480936 BC013082	156986	-	NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A##AK223565|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##BC013082|SIAH2|6478|seven in absentia homolog 2 (Drosophila)	1.929969	0.0	denovo_WM_7:1:0.837	denovo_WM_7:-23:0.500
chr8	126614485	126614640	reg1008892.p2	5.156	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-171983	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-510465	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-510505	-	TSC_hg19_v1_chr8_-_126963395 BX648371	348851	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	955993	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	956162	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	0.97874	0.0	denovo_WM_7:33:0.444	denovo_WM_7:35:0.389
chr3	141160344	141160458	reg1010010.p1	5.155	+	AK311479 TSC_hg19_v1_chr3_+_141105293	-55113	+	TSC_hg19_v1_chr3_+_141087345 AK311501	-73044	+	BC015444 NM_001080412 TSC_hg19_v1_chr3_+_141043057	-117345	+	TSC_hg19_v1_chr3_+_141205882 AK292016 AK301015 AF115573 D78155 D82880 NM_006506	45470	+	TSC_hg19_v1_chr3_+_141457045 NM_001201370 NM_014245 NM_183237	296668	+	TSC_hg19_v1_chr3_+_141457129 AK311982	296719	+	AK311501|ZBTB38|253461|zinc finger and BTB domain containing 38##BC015444|ZBTB38|253461|zinc finger and BTB domain containing 38##NM_001080412|ZBTB38|253461|zinc finger and BTB domain containing 38##AK292016|RASA2|5922|RAS p21 protein activator 2##AK301015|RASA2|5922|RAS p21 protein activator 2##AF115573|RASA2|5922|RAS p21 protein activator 2##D78155|RASA2|5922|RAS p21 protein activator 2##D82880|RASA2|5922|RAS p21 protein activator 2##NM_006506|RASA2|5922|RAS p21 protein activator 2##NM_001201370|RNF7|9616|ring finger protein 7##NM_014245|RNF7|9616|ring finger protein 7##NM_183237|RNF7|9616|ring finger protein 7##AK311982|RNF7|9616|ring finger protein 7	0.0	0.0	
chr12	53746490	53746634	reg1009012.p1	5.154	+	AY150674 NM_001173467	-16559	-	AB527932 EU446563 BC101549 BC113613 AY150673 AF477981 NM_152860 AF466179	-17079	-	TSC_hg19_v1_chr12_-_53715374 AK293342 BC000659 BC018836 AY237818 NM_001173466 NM_015665	-31185	-	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	27428	+	BC043224 NM_003109	27862	+	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	71116	+	AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##EU446563|SP7|121340|Sp7 transcription factor##BC101549|SP7|121340|Sp7 transcription factor##BC113613|SP7|121340|Sp7 transcription factor##AY150673|SP7|121340|Sp7 transcription factor##AF477981|SP7|121340|Sp7 transcription factor##NM_152860|SP7|121340|Sp7 transcription factor##AF466179|SP7|121340|Sp7 transcription factor##AK293342|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC000659|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC018836|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##AY237818|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_001173466|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_015665|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II	0.0	0.996191	CTCF.p2:2:0.985
chr14	55658472	55658580	reg1006739.p1	5.154	+	TSC_hg19_v1_chr14_-_55658298 BX248255 D13633 AK291847 AK299338 BC010658 AK297480 AB076695 NM_001146015 NM_014750	-226	-	TSC_hg19_v1_chr14_-_55650349 BT007344	-8120	-	TSC_hg19_v1_chr14_+_55595969 AB006780 BC053667 BC068068 M36682 BC001120 M35368 M57710	-62541	+	NM_017943 AK092879 AX747787 TSC_hg19_v1_chr14_+_55738097 BC109120 BC109121	79533	+	TSC_hg19_v1_chr14_+_55738114 BX248268 BC095482	79632	+	NM_152231	80345	+	BX248255|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##D13633|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK291847|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK299338|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BC010658|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK297480|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB076695|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_001146015|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_014750|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BT007344|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB006780|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC053667|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC068068|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M36682|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC001120|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M35368|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M57710|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_017943|FBXO34|55030|F-box protein 34##AK092879|FBXO34|55030|F-box protein 34##BC109120|FBXO34|55030|F-box protein 34##BC109121|FBXO34|55030|F-box protein 34##BX248268|FBXO34|55030|F-box protein 34##BC095482|FBXO34|55030|F-box protein 34##NM_152231|FBXO34|55030|F-box protein 34	0.995426	0.0	
chr22	34250150	34250276	reg1007819.p2	5.154	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-795858	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-847487	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-1052461	+	AJ007583 AB011181 NM_004737 NM_133642	66157	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1211936	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1403263	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	1.969895	0.0	denovo_WM_7:-3:0.428	denovo_WM_7:-4:0.517	denovo_WM_7:11:0.886
chr7	88632260	88632390	reg1007201.p1	5.154	+	BC028365 NM_152706	-207295	-	BC140826 BC140829 AK056672 AY295769 NM_181646	-243609	+	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	-696111	-	NM_012449 TSC_hg19_v1_chr7_+_89783782 AK308452 BC011802	1151412	+	AK304076 TSC_hg19_v1_chr7_+_89783791 AF186249	1151487	+	AF455138 NM_001244944 NM_001244945 NM_152999 AK092666 AX747660 TSC_hg19_v1_chr7_+_89841171 AY008443 AY008444 AY008445 NM_001040665 NM_001244946 AK315043	1208790	+	BC028365|C7orf62|219557|chromosome 7 open reading frame 62##NM_152706|C7orf62|219557|chromosome 7 open reading frame 62##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B##BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##NM_012449|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK308452|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##BC011802|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK304076|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF186249|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF455138|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244944|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244945|STEAP2|261729|STEAP family member 2, metalloreductase##NM_152999|STEAP2|261729|STEAP family member 2, metalloreductase##AK092666|STEAP2|261729|STEAP family member 2, metalloreductase##AY008443|STEAP2|261729|STEAP family member 2, metalloreductase##AY008444|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001040665|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244946|STEAP2|261729|STEAP family member 2, metalloreductase##AK315043|STEAP2|261729|STEAP family member 2, metalloreductase	0.997386	0.0	denovo_WM_7:26:0.772
chr16	18815239	18815371	reg1008558.p2	5.153	+	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-2523	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-13650	-	TSC_hg19_v1_chr16_-_18798077 AK127316	-17209	-	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	122426	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	180014	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	180253	+	AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7	0.0	0.0	
chr18	28848131	28848311	reg1009177.p2	5.153	+	Z34522 NM_004948 NM_024421 X72925	-105440	-	TSC_hg19_v1_chr18_-_28682275 EF017811 EF017812 X56807 AK297029 AK290313 BX648425 BC063291 NM_004949 NM_024422	-166030	-	CR749226 TSC_hg19_v1_chr18_-_28681542	-166733	-	AF097935 NM_001942 X56654 AB591022	49936	+	AY177664 NM_001134453 NM_177986 AY168788 AY228236 BC132907 BC132909 AY227350	108585	+	AK290367 NM_001944 M76482	179523	+	Z34522|DSC1|1823|desmocollin 1##NM_004948|DSC1|1823|desmocollin 1##NM_024421|DSC1|1823|desmocollin 1##X72925|DSC1|1823|desmocollin 1##EF017811|DSC2|1824|desmocollin 2##EF017812|DSC2|1824|desmocollin 2##X56807|DSC2|1824|desmocollin 2##AK297029|DSC2|1824|desmocollin 2##AK290313|DSC2|1824|desmocollin 2##BX648425|DSC2|1824|desmocollin 2##BC063291|DSC2|1824|desmocollin 2##NM_004949|DSC2|1824|desmocollin 2##NM_024422|DSC2|1824|desmocollin 2##CR749226|DSC2|1824|desmocollin 2##AF097935|DSG1|1828|desmoglein 1##NM_001942|DSG1|1828|desmoglein 1##X56654|DSG1|1828|desmoglein 1##AY177664|DSG4|147409|desmoglein 4##NM_001134453|DSG4|147409|desmoglein 4##NM_177986|DSG4|147409|desmoglein 4##AY168788|DSG4|147409|desmoglein 4##AY228236|DSG4|147409|desmoglein 4##BC132907|DSG4|147409|desmoglein 4##BC132909|DSG4|147409|desmoglein 4##AY227350|DSG4|147409|desmoglein 4##AK290367|DSG3|1830|desmoglein 3##NM_001944|DSG3|1830|desmoglein 3##M76482|DSG3|1830|desmoglein 3	0.975154	0.0	denovo_WM_7:-36:0.562
chr6	4781803	4781954	reg1012683.p1	5.153	+	TSC_hg19_v1_chr6_+_4776889 BC119682	-4957	+	TSC_hg19_v1_chr6_+_4776647 AK291601 BC108725 NM_004824	-5218	+	TSC_hg19_v1_chr6_+_4136242 AK092451	-645605	+	AK296985 NM_001143970	54453	+	BC043397 NM_001143971	108347	+	TSC_hg19_v1_chr6_+_5004043 AK094934	222148	+	BC119682|CDYL|9425|chromodomain protein, Y-like##AK291601|CDYL|9425|chromodomain protein, Y-like##BC108725|CDYL|9425|chromodomain protein, Y-like##NM_004824|CDYL|9425|chromodomain protein, Y-like##AK092451|LOC100507506|100507506|uncharacterized LOC100507506##AK296985|CDYL|9425|chromodomain protein, Y-like##NM_001143970|CDYL|9425|chromodomain protein, Y-like##BC043397|CDYL|9425|chromodomain protein, Y-like##NM_001143971|CDYL|9425|chromodomain protein, Y-like##AK094934|LOC285778|285778|uncharacterized LOC285778	0.0	0.0	
chr19	11060968	11061137	reg1011044.p1	5.152	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-21595	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-21813	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-78616	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	10594	+	TSC_hg19_v1_chr19_+_11071717 BC007302	10663	+	TSC_hg19_v1_chr19_+_11071720 BC035916	10698	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	1.228241	0.0	denovo_WM_7:-11:0.203	denovo_WM_7:-12:0.234
chr9	132784926	132785012	reg1004200.p1	5.152	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-187204	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-187247	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-187285	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	20385	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	20519	-	BC039728 NM_001136557 NM_001136558 NM_020960	31015	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.495877	0.0	denovo_WM_7:-14:0.422
chr10	52748628	52748736	reg1007881.p2	5.151	+	TSC_hg19_v1_chr10_-_52645440 BC054873 AK000324 NM_001198818 NM_001198819 NM_001198820 NM_014576 NM_138932 NM_138933	-103247	-	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	-103289	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	-248972	+	TSC_hg19_v1_chr10_+_52750904 NM_001098512	2225	+	TSC_hg19_v1_chr10_+_52750944 AK300110	2258	+	TSC_hg19_v1_chr10_+_52751129 D45864	2439	+	BC054873|A1CF|29974|APOBEC1 complementation factor##AK000324|A1CF|29974|APOBEC1 complementation factor##NM_001198818|A1CF|29974|APOBEC1 complementation factor##NM_001198819|A1CF|29974|APOBEC1 complementation factor##NM_001198820|A1CF|29974|APOBEC1 complementation factor##NM_014576|A1CF|29974|APOBEC1 complementation factor##NM_138932|A1CF|29974|APOBEC1 complementation factor##NM_138933|A1CF|29974|APOBEC1 complementation factor##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##NM_001098512|PRKG1|5592|protein kinase, cGMP-dependent, type I##AK300110|PRKG1|5592|protein kinase, cGMP-dependent, type I##D45864|PRKG1|5592|protein kinase, cGMP-dependent, type I	0.995764	0.070089	denovo_WM_7:6:0.776	denovo_WM_7:7:0.203
chr14	61978876	61979056	reg1010731.p2	5.151	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-190439	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-230444	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-230772	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	183224	+	FJ790247 NM_001243084	185373	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	250153	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.999243	0.0	
chr19	14528926	14529087	reg1010388.p1	5.151	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	-36751	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	-36957	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-211958	-	TSC_hg19_v1_chr19_-_14529877 AK301847	883	-	TSC_hg19_v1_chr19_-_14530152 BC001009 BC032128 BC010455 AK293911	1134	-	TSC_hg19_v1_chr19_-_14530193 U90426 NM_005804	1168	-	AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC001009|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC032128|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC010455|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK293911|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##U90426|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##NM_005804|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	1.106239	0.0	
chr5	102083637	102083801	reg1008348.p2	5.150	+	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	-249086	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	-451611	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-1844791	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	117811	+	M37721 TSC_hg19_v1_chr5_+_102201730 AK296521 AK290158 S75037 S75038 AB527419 AB095007 BT007419	118087	+	BC151135 BC157835 BC015325 CR627424 AK295796 AK225572 AK000132 NM_017676 TSC_hg19_v1_chr5_-_102455843	372094	-	DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase##M37721|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK296521|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK290158|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75037|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75038|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AB095007|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BT007419|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BC151135|GIN1|54826|gypsy retrotransposon integrase 1##BC157835|GIN1|54826|gypsy retrotransposon integrase 1##BC015325|GIN1|54826|gypsy retrotransposon integrase 1##CR627424|GIN1|54826|gypsy retrotransposon integrase 1##AK295796|GIN1|54826|gypsy retrotransposon integrase 1##AK225572|GIN1|54826|gypsy retrotransposon integrase 1##AK000132|GIN1|54826|gypsy retrotransposon integrase 1##NM_017676|GIN1|54826|gypsy retrotransposon integrase 1	0.0	0.0	
chr8	146011339	146011437	reg1001223.p2	5.150	+	TSC_hg19_v1_chr8_-_145980977 NM_138367	-30414	-	TSC_hg19_v1_chr8_-_145980846 AK000435	-30534	-	TSC_hg19_v1_chr8_-_145911232 AK296353	-100161	-	TSC_hg19_v1_chr8_-_146012703 BC004480 AL833814 AK096508 NM_030580	1312	-	TSC_hg19_v1_chr8_-_146017753 BC012197 NM_033301 BC013104 BC000077	6352	-	AK301073 D28421 TSC_hg19_v1_chr8_-_146017776	6388	-	NM_138367|ZNF251|90987|zinc finger protein 251##AK000435|ZNF251|90987|zinc finger protein 251##AK296353|ARHGAP39|80728|Rho GTPase activating protein 39##BC004480|ZNF34|80778|zinc finger protein 34##AL833814|ZNF34|80778|zinc finger protein 34##AK096508|ZNF34|80778|zinc finger protein 34##NM_030580|ZNF34|80778|zinc finger protein 34##BC012197|RPL8|6132|ribosomal protein L8##NM_033301|RPL8|6132|ribosomal protein L8##BC013104|RPL8|6132|ribosomal protein L8##BC000077|RPL8|6132|ribosomal protein L8##AK301073|RPL8|6132|ribosomal protein L8	0.998289	0.0	
chr12	15921389	15921495	reg1008926.p1	5.149	+	TSC_hg19_v1_chr12_-_15865848 AK292931	-55578	-	TSC_hg19_v1_chr12_-_15815073 AK316134	-106302	-	TSC_hg19_v1_chr12_+_15699551 AK290982	-221865	+	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	20790	-	TSC_hg19_v1_chr12_-_15942350 AK304860 NM_004447	20987	-	NM_007178 TSC_hg19_v1_chr12_+_16035321 AK074607 AK315891 AK297942 BC062306 AF161496 AB024327 AL136691 AK312295	113888	+	AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK304860|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_004447|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_007178|STRAP|11171|serine/threonine kinase receptor associated protein##AK315891|STRAP|11171|serine/threonine kinase receptor associated protein##AK297942|STRAP|11171|serine/threonine kinase receptor associated protein##BC062306|STRAP|11171|serine/threonine kinase receptor associated protein##AF161496|STRAP|11171|serine/threonine kinase receptor associated protein##AB024327|STRAP|11171|serine/threonine kinase receptor associated protein##AL136691|STRAP|11171|serine/threonine kinase receptor associated protein##AK312295|STRAP|11171|serine/threonine kinase receptor associated protein	1.276721	0.0	denovo_WM_7:-70:0.252
chr14	78054836	78054986	reg1010604.p1	5.149	+	BX248771 BX248277 BX248770 AK056709 AK291600 AK300214 BC101019 BC101020 BC101021 BC101022 CR749863 AJ583024 AK075445 NM_182509 NM_199296	-89757	-	TSC_hg19_v1_chr14_+_77924438 BC000321 AK313824 AF164791	-130469	+	TSC_hg19_v1_chr14_+_77924412 NM_012111 AK300766 AJ243310	-130521	+	CU675001 DQ893297 DQ896786 TSC_hg19_v1_chr14_-_78082949	28024	-	Y08686 TSC_hg19_v1_chr14_-_78082981 BC005123	28083	-	AB011098 NM_004863 TSC_hg19_v1_chr14_-_78083124	28215	-	BX248771|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248277|ISM2|145501|isthmin 2 homolog (zebrafish)##BX248770|ISM2|145501|isthmin 2 homolog (zebrafish)##AK056709|ISM2|145501|isthmin 2 homolog (zebrafish)##AK291600|ISM2|145501|isthmin 2 homolog (zebrafish)##AK300214|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101019|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101020|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101021|ISM2|145501|isthmin 2 homolog (zebrafish)##BC101022|ISM2|145501|isthmin 2 homolog (zebrafish)##CR749863|ISM2|145501|isthmin 2 homolog (zebrafish)##AJ583024|ISM2|145501|isthmin 2 homolog (zebrafish)##AK075445|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_182509|ISM2|145501|isthmin 2 homolog (zebrafish)##NM_199296|ISM2|145501|isthmin 2 homolog (zebrafish)##BC000321|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK313824|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AF164791|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##NM_012111|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AK300766|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##AJ243310|AHSA1|10598|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)##DQ893297|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##DQ896786|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##Y08686|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##BC005123|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##AB011098|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2##NM_004863|SPTLC2|9517|serine palmitoyltransferase, long chain base subunit 2	0.992329	0.0	denovo_WM_7:-28:0.246	denovo_WM_7:-31:0.388	denovo_WM_7:-32:0.251
chr12	122017843	122018019	reg1008562.p1	5.148	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-112857	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-179967	+	AK025614 NM_001137559	-225920	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	328	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	983	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	46712	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	1.989003	0.0	denovo_WM_7:-72:0.310	denovo_WM_7:-73:0.310	denovo_WM_7:-74:0.310
chr21	26934141	26934321	reg1014957.p1	5.148	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1133163	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4563458	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4563541	+	TSC_hg19_v1_chr21_+_26934442 AF402776	241	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	45584	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	77422	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.108438	0.0	
chr7	104621751	104621900	reg1010238.p1	5.148	+	TSC_hg19_v1_chr7_-_104567089 BC050337	-54735	-	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-652607	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-773394	-	TSC_hg19_v1_chr7_-_104653491 AK124046	31657	-	TSC_hg19_v1_chr7_-_104654062 AK094372	32249	-	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	32677	-	BC050337|LOC723809|723809|uncharacterized LOC723809##AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545	0.0	0.176925	
chr1	244237981	244238161	reg1011783.p1	5.147	+	TSC_hg19_v1_chr1_+_244217286 AK310634	-20776	+	BC078175 AJ001388 NM_006352	-21528	+	TSC_hg19_v1_chr1_+_244214584 AK291408 AK293892 BC036677	-23488	+	BC054479 NM_001012970	277865	+	CU680302 EU831433 EU831525 TSC_hg19_v1_chr1_-_244615212 AK025514 AK303886 BC012356	377105	-	TSC_hg19_v1_chr1_-_244615392 AK308749 NM_001126	377267	-	BC078175|ZNF238|10472|zinc finger protein 238##AJ001388|ZNF238|10472|zinc finger protein 238##NM_006352|ZNF238|10472|zinc finger protein 238##AK291408|ZNF238|10472|zinc finger protein 238##AK293892|ZNF238|10472|zinc finger protein 238##BC036677|ZNF238|10472|zinc finger protein 238##BC054479|C1orf100|200159|chromosome 1 open reading frame 100##NM_001012970|C1orf100|200159|chromosome 1 open reading frame 100##EU831433|ADSS|159|adenylosuccinate synthase##EU831525|ADSS|159|adenylosuccinate synthase##AK025514|ADSS|159|adenylosuccinate synthase##AK303886|ADSS|159|adenylosuccinate synthase##BC012356|ADSS|159|adenylosuccinate synthase##AK308749|ADSS|159|adenylosuccinate synthase##NM_001126|ADSS|159|adenylosuccinate synthase	0.013702	0.0	
chr13	33400599	33400712	reg1008059.p1	5.147	+	TSC_hg19_v1_chr13_+_33160686 BC039256 U95825 BC070274 AK299340	-239972	+	TSC_hg19_v1_chr13_+_33160649 AB023196	-240016	+	TSC_hg19_v1_chr13_+_33160610 AL137201	-240037	+	TSC_hg19_v1_chr13_+_33590478 AB005142 NM_004795	189868	+	AY082590 BC046563 NM_001243466 NM_178007	359560	-	AL049801 AY082591 AK091804 NM_001243474 NM_052851	379509	-	BC039256|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##U95825|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##BC070274|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AK299340|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AB023196|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AL137201|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AB005142|KL|9365|klotho##NM_004795|KL|9365|klotho##AY082590|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##BC046563|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243466|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178007|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AL049801|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082591|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK091804|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243474|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_052851|STARD13|90627|StAR-related lipid transfer (START) domain containing 13	0.95804	0.0	denovo_WM_7:-42:0.302
chr14	102426635	102426746	reg1009616.p2	5.147	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-150381	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	-150507	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-198504	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	4138	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	4271	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	126674	-	AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	1.873782	0.0	denovo_WM_7:-38:0.725	denovo_WM_7:-66:0.778
chr2	197202119	197202254	reg1005952.p1	5.147	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-165868	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-165907	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-268691	-	BC117194 BC117198 AB037722 NM_020760	255106	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	302171	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	462227	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.994054	0.755769	CTCF.p2:78:0.756	denovo_WM_7:104:0.434	denovo_WM_7:105:0.548
chr3	27753407	27753586	reg1001494.p1	5.147	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-227566	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-227671	-	AF047033 AF089726 NM_003615	-255252	-	AB031038 BC131712 NM_005442 AB463608 BC037568	10297	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	10705	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	529602	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	0.0	0.0	
chr11	64103060	64103172	reg1006992.p1	5.145	+	TSC_hg19_v1_chr11_+_64085676 AF124993 AF110731 BC113723 BC113725 BC143849 BC171733 AF112212 AF242525 AF231705 CR457203 HQ258129 AJ249483	-17394	+	BC110983 NM_012094 NM_181651 NM_181652 TSC_hg19_v1_chr11_+_64085600 AF197952	-17537	+	TSC_hg19_v1_chr11_-_64085009 AK312050 DQ892261 DQ895463 BC105294 BC029482 BC017172 AF161501 AF229068 NM_016404	-18095	-	TSC_hg19_v1_chr11_+_64107692 BC151218 BC151222 NM_032251 AK090436 BC140822 BC140824 BC141866	4586	+	TSC_hg19_v1_chr11_+_64120348 AK126728	17243	+	TSC_hg19_v1_chr11_+_64126642 AK223561 NM_001006944 NM_003942 AJ010119 AK292163 AK313567 BC047896 AK298507 BC028079 CU690526 AF074715	23615	+	AF124993|PRDX5|25824|peroxiredoxin 5##AF110731|PRDX5|25824|peroxiredoxin 5##BC113723|PRDX5|25824|peroxiredoxin 5##BC113725|PRDX5|25824|peroxiredoxin 5##BC143849|PRDX5|25824|peroxiredoxin 5##BC171733|PRDX5|25824|peroxiredoxin 5##AF112212|PRDX5|25824|peroxiredoxin 5##AF242525|PRDX5|25824|peroxiredoxin 5##AF231705|PRDX5|25824|peroxiredoxin 5##CR457203|PRDX5|25824|peroxiredoxin 5##HQ258129|PRDX5|25824|peroxiredoxin 5##AJ249483|PRDX5|25824|peroxiredoxin 5##BC110983|PRDX5|25824|peroxiredoxin 5##NM_012094|PRDX5|25824|peroxiredoxin 5##NM_181651|PRDX5|25824|peroxiredoxin 5##NM_181652|PRDX5|25824|peroxiredoxin 5##AF197952|PRDX5|25824|peroxiredoxin 5##AK312050|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ892261|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##DQ895463|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC105294|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC029482|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC017172|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF161501|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##AF229068|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##NM_016404|TRMT112|51504|tRNA methyltransferase 11-2 homolog (S. cerevisiae)##BC151218|CCDC88B|283234|coiled-coil domain containing 88B##BC151222|CCDC88B|283234|coiled-coil domain containing 88B##NM_032251|CCDC88B|283234|coiled-coil domain containing 88B##AK090436|CCDC88B|283234|coiled-coil domain containing 88B##BC140822|CCDC88B|283234|coiled-coil domain containing 88B##BC140824|CCDC88B|283234|coiled-coil domain containing 88B##BC141866|CCDC88B|283234|coiled-coil domain containing 88B##AK126728|CCDC88B|283234|coiled-coil domain containing 88B##AK223561|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_001006944|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_003942|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AJ010119|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK292163|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK313567|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC047896|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK298507|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC028079|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AF074715|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4	0.0	0.0	
chr1	227918100	227918222	reg1009734.p2	5.145	+	AK055266 AK093736 BC032775 TSC_hg19_v1_chr1_+_227916386	-1844	+	AK311313 TSC_hg19_v1_chr1_+_227751265	-166880	+	TSC_hg19_v1_chr1_+_227751254 NM_178549 AK026475 AK307248 BC042500	-166923	+	AY090635 NM_053052	4535	+	TSC_hg19_v1_chr1_-_227922985 BC011928	4810	-	TSC_hg19_v1_chr1_-_227923113 AK023030 AK022579 NM_001161465 NM_023007 AB528287	4938	-	AK055266|LOC100130093|100130093|uncharacterized LOC100130093##AK093736|LOC100130093|100130093|uncharacterized LOC100130093##AK311313|ZNF678|339500|zinc finger protein 678##NM_178549|ZNF678|339500|zinc finger protein 678##AK026475|ZNF678|339500|zinc finger protein 678##AK307248|ZNF678|339500|zinc finger protein 678##BC042500|ZNF678|339500|zinc finger protein 678##AY090635|SNAP47|116841|synaptosomal-associated protein, 47kDa##NM_053052|SNAP47|116841|synaptosomal-associated protein, 47kDa##BC011928|JMJD4|65094|jumonji domain containing 4##AK023030|JMJD4|65094|jumonji domain containing 4##AK022579|JMJD4|65094|jumonji domain containing 4##NM_001161465|JMJD4|65094|jumonji domain containing 4##NM_023007|JMJD4|65094|jumonji domain containing 4	0.993235	0.0	denovo_WM_7:-28:0.879
chr17	64709761	64709886	reg1009361.p2	5.145	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-410896	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-411073	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-484298	-	AK290171 TSC_hg19_v1_chr17_+_64831234	121412	+	BC101633 NM_145811 BC101607 AF361351 AF458898	163597	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	251066	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.0	0.0	
chr19	14495834	14495923	reg1003571.p2	5.145	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	-3623	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	-3829	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-178830	-	TSC_hg19_v1_chr19_-_14529877 AK301847	34011	-	TSC_hg19_v1_chr19_-_14530152 BC001009 BC032128 BC010455 AK293911	34262	-	TSC_hg19_v1_chr19_-_14530193 U90426 NM_005804	34296	-	AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC001009|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC032128|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC010455|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK293911|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##U90426|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##NM_005804|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	2.099528	0.0	denovo_WM_7:-75:0.781
chr21	34777429	34777585	reg1008782.p2	5.145	+	TSC_hg19_v1_chr21_+_34775780 AB463788 DQ892320 DQ895522	-1694	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	-1759	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	-1775	+	TSC_hg19_v1_chr21_-_34787167 DQ655977	9701	-	TSC_hg19_v1_chr21_-_34852209 AK310701	74680	-	TSC_hg19_v1_chr21_-_34852239 AY358634 BC000569 AK309977 BX537378 AF045606	74742	-	DQ892320|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##DQ895522|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK310701|TMEM50B|757|transmembrane protein 50B##AY358634|TMEM50B|757|transmembrane protein 50B##BC000569|TMEM50B|757|transmembrane protein 50B##AK309977|TMEM50B|757|transmembrane protein 50B##AF045606|TMEM50B|757|transmembrane protein 50B	1.026188	0.0	
chr9	93734563	93734669	reg1010522.p1	5.145	+	NM_001174167 X73568	-144883	+	TSC_hg19_v1_chr9_+_93564206 NM_001174168 BC011399	-170401	+	TSC_hg19_v1_chr9_+_93564100 AK290927	-170501	+	TSC_hg19_v1_chr9_-_94124185 AB528075 AM393420 CU676666 DQ892036 DQ895227 X79888 AK302453	389554	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	389583	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	451428	-	NM_001174167|SYK|6850|spleen tyrosine kinase##X73568|SYK|6850|spleen tyrosine kinase##NM_001174168|SYK|6850|spleen tyrosine kinase##BC011399|SYK|6850|spleen tyrosine kinase##AK290927|SYK|6850|spleen tyrosine kinase##AM393420|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ892036|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ895227|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##X79888|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK302453|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated	1.226506	0.0	denovo_WM_7:-57:0.238	denovo_WM_7:-61:0.401
chr1	229694757	229694911	reg1003848.p1	5.144	+	TSC_hg19_v1_chr1_-_229694431 AB013380 BC064930 AF216833 NM_012089	-406	-	TSC_hg19_v1_chr1_-_229644079 AK001676 NM_018230 AK304061	-50734	-	AB384686 DQ894268 EU176236 AK092339 AK314431 AX747487 TSC_hg19_v1_chr1_-_229644075 BC020107 AK304861	-50799	-	BC041094 TSC_hg19_v1_chr1_-_229761747	66911	-	NM_001025247 NM_014409 TSC_hg19_v1_chr1_-_229761804	66964	-	AK291013 TSC_hg19_v1_chr1_+_229761973 D50923 NM_014777 BC059381	67140	+	AB013380|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##BC064930|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##AF216833|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##NM_012089|ABCB10|23456|ATP-binding cassette, sub-family B (MDR/TAP), member 10##AK001676|NUP133|55746|nucleoporin 133kDa##NM_018230|NUP133|55746|nucleoporin 133kDa##AK304061|NUP133|55746|nucleoporin 133kDa##DQ894268|NUP133|55746|nucleoporin 133kDa##EU176236|NUP133|55746|nucleoporin 133kDa##AK092339|NUP133|55746|nucleoporin 133kDa##AK314431|NUP133|55746|nucleoporin 133kDa##BC020107|NUP133|55746|nucleoporin 133kDa##AK304861|NUP133|55746|nucleoporin 133kDa##BC041094|TAF5L|27097|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##NM_001025247|TAF5L|27097|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##NM_014409|TAF5L|27097|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa##AK291013|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##D50923|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##NM_014777|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC059381|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	0.0	0.0	
chr17	35763409	35763552	reg1010606.p2	5.144	+	AK096966 BC034672 NM_173625 CU689930	-30500	+	TSC_hg19_v1_chr17_-_35716040 AB371587 AK309084 AY315621 AY315622 NM_198836	-47428	-	AY315619 AY315620 NM_198837 NM_198838	-106789	-	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	3395	-	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	3482	+	AK022767 NM_001488 NM_133439	3831	+	AK096966|C17orf78|284099|chromosome 17 open reading frame 78##BC034672|C17orf78|284099|chromosome 17 open reading frame 78##NM_173625|C17orf78|284099|chromosome 17 open reading frame 78##AB371587|ACACA|31|acetyl-CoA carboxylase alpha##AK309084|ACACA|31|acetyl-CoA carboxylase alpha##AY315621|ACACA|31|acetyl-CoA carboxylase alpha##AY315622|ACACA|31|acetyl-CoA carboxylase alpha##NM_198836|ACACA|31|acetyl-CoA carboxylase alpha##AY315619|ACACA|31|acetyl-CoA carboxylase alpha##AY315620|ACACA|31|acetyl-CoA carboxylase alpha##NM_198837|ACACA|31|acetyl-CoA carboxylase alpha##NM_198838|ACACA|31|acetyl-CoA carboxylase alpha##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A##AK022767|TADA2A|6871|transcriptional adaptor 2A##NM_001488|TADA2A|6871|transcriptional adaptor 2A##NM_133439|TADA2A|6871|transcriptional adaptor 2A	0.993822	0.0	
chr3	70157449	70157562	reg1009130.p2	5.143	+	TSC_hg19_v1_chr3_+_70048883 BC015590	-108617	+	NM_000248 NM_001184968 NM_198158 NM_198178 Z29678 BC012503 BC065243 BC026961 GU355676	-171694	+	NM_198177 AB006989 AK297858	-242104	+	TSC_hg19_v1_chr3_-_71114076 AK074569 NM_001244813	956691	-	TSC_hg19_v1_chr3_-_71179732 AK027264	1022218	-	AK297649 TSC_hg19_v1_chr3_-_71179738 BX647682	1022235	-	NM_000248|MITF|4286|microphthalmia-associated transcription factor##NM_001184968|MITF|4286|microphthalmia-associated transcription factor##NM_198158|MITF|4286|microphthalmia-associated transcription factor##NM_198178|MITF|4286|microphthalmia-associated transcription factor##Z29678|MITF|4286|microphthalmia-associated transcription factor##BC012503|MITF|4286|microphthalmia-associated transcription factor##BC065243|MITF|4286|microphthalmia-associated transcription factor##BC026961|MITF|4286|microphthalmia-associated transcription factor##GU355676|MITF|4286|microphthalmia-associated transcription factor##NM_198177|MITF|4286|microphthalmia-associated transcription factor##AB006989|MITF|4286|microphthalmia-associated transcription factor##AK297858|MITF|4286|microphthalmia-associated transcription factor##AK074569|FOXP1|27086|forkhead box P1##NM_001244813|FOXP1|27086|forkhead box P1##AK027264|FOXP1|27086|forkhead box P1##AK297649|FOXP1|27086|forkhead box P1##BX647682|FOXP1|27086|forkhead box P1	0.997932	0.0	denovo_WM_7:77:0.229	denovo_WM_7:78:0.229	denovo_WM_7:79:0.229	denovo_WM_7:80:0.229
chr11	90326483	90326579	reg1008096.p1	5.142	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-342121	+	AK290231 NM_001144073 NM_012124	-370000	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-370329	-	NM_001008781	1758730	+	BC069163 NM_005959 U25341 AY521019	2376308	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2604456	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.994989	0.0	denovo_WM_7:33:0.332	denovo_WM_7:34:0.332	denovo_WM_7:35:0.332
chr21	47946191	47946322	reg1010048.p1	5.142	+	AK056738 TSC_hg19_v1_chr21_+_47878972 AB273729	-67260	+	TSC_hg19_v1_chr21_+_47878854 AK303351 NM_001146114 NM_001146115 NM_001146116 NM_015151 NM_206889 NM_206890 NM_206891 BC038443 BC033718 AF490768	-67394	+	TSC_hg19_v1_chr21_-_47878602 AK127572	-67655	-	BC001766 TSC_hg19_v1_chr21_-_48024996 BC041935 CS301701 CS301702 NM_006272	78753	-	TSC_hg19_v1_chr21_+_48055078 AK123650	108821	+	NM_001242864 NM_001242865 NM_001242866 NM_001535 NM_206962 TSC_hg19_v1_chr21_+_48055572 AK123352 AY786414 FJ436410 FJ436411 FJ436412 U79286 X99209 U80213 AK312573 AL833586	109287	+	AK056738|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AB273729|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AK303351|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146114|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146115|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146116|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_015151|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206889|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206890|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206891|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC038443|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC033718|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AF490768|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC001766|S100B|6285|S100 calcium binding protein B##BC041935|S100B|6285|S100 calcium binding protein B##NM_006272|S100B|6285|S100 calcium binding protein B##AK123650|PRMT2|3275|protein arginine methyltransferase 2##NM_001242864|PRMT2|3275|protein arginine methyltransferase 2##NM_001242865|PRMT2|3275|protein arginine methyltransferase 2##NM_001242866|PRMT2|3275|protein arginine methyltransferase 2##NM_001535|PRMT2|3275|protein arginine methyltransferase 2##NM_206962|PRMT2|3275|protein arginine methyltransferase 2##AK123352|PRMT2|3275|protein arginine methyltransferase 2##AY786414|PRMT2|3275|protein arginine methyltransferase 2##FJ436410|PRMT2|3275|protein arginine methyltransferase 2##FJ436411|PRMT2|3275|protein arginine methyltransferase 2##FJ436412|PRMT2|3275|protein arginine methyltransferase 2##U79286|PRMT2|3275|protein arginine methyltransferase 2##X99209|PRMT2|3275|protein arginine methyltransferase 2##U80213|PRMT2|3275|protein arginine methyltransferase 2##AK312573|PRMT2|3275|protein arginine methyltransferase 2##AL833586|PRMT2|3275|protein arginine methyltransferase 2	0.991974	0.0	denovo_WM_7:62:0.837
chr8	52812635	52812754	reg1010754.p2	5.142	+	AK299452 TSC_hg19_v1_chr8_+_52812239	-471	+	TSC_hg19_v1_chr8_-_52811724 NM_052937	-967	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	-1092	-	BC026316 AB011107 AK311188 BC031075 NM_014682 BC025662	509626	-	BC130641 BC130643 BC144534 AY358213 NM_207413	665299	-	AK291699 D86958 TSC_hg19_v1_chr8_-_53626990	814292	-	NM_052937|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AB011107|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##AK311188|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##BC031075|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##NM_014682|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##BC130641|FAM150A|389658|family with sequence similarity 150, member A##BC130643|FAM150A|389658|family with sequence similarity 150, member A##BC144534|FAM150A|389658|family with sequence similarity 150, member A##AY358213|FAM150A|389658|family with sequence similarity 150, member A##NM_207413|FAM150A|389658|family with sequence similarity 150, member A##AK291699|RB1CC1|9821|RB1-inducible coiled-coil 1##D86958|RB1CC1|9821|RB1-inducible coiled-coil 1	0.985868	0.0	denovo_WM_7:-13:0.822
chr19	36193863	36193969	reg1007616.p2	5.141	+	BC107097 BC107098 NM_007000 AF085807	-36200	+	TSC_hg19_v1_chr19_+_36139253 D28426 BC002478 X54473 X13923	-54664	+	TSC_hg19_v1_chr19_+_36139222 AK312140	-54692	+	AF130255 NM_014383	9913	+	TSC_hg19_v1_chr19_+_36208923 AJ007041 NM_014727	15014	+	TSC_hg19_v1_chr19_+_36209125 AF186605	15270	+	BC107097|UPK1A|11045|uroplakin 1A##BC107098|UPK1A|11045|uroplakin 1A##NM_007000|UPK1A|11045|uroplakin 1A##AF085807|UPK1A|11045|uroplakin 1A##D28426|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##BC002478|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##X54473|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##X13923|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##AK312140|COX6B1|1340|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)##AF130255|ZBTB32|27033|zinc finger and BTB domain containing 32##NM_014383|ZBTB32|27033|zinc finger and BTB domain containing 32##AJ007041|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##NM_014727|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##AF186605|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4	0.490197	0.0	denovo_WM_7:21:0.426
chr11	57496785	57496898	reg1008359.p2	5.140	+	AF132965 TSC_hg19_v1_chr11_+_57480075 AF059753 BC093062 AK075359 AK312990 AY451237 AY451236 BC000666 AX810695 AK297688 AK298065 AK223058 AB002382 AY358501 AB587557 AX810717	-16771	+	NM_001144012 NM_015959 TSC_hg19_v1_chr11_+_57480020	-16832	+	AY148462 AB463861 BC009723 BC037223 NM_153450 TSC_hg19_v1_chr11_-_57479688	-17228	-	NM_170746 BC111087 AF536829 AJ276250 TSC_hg19_v1_chr11_+_57508954 AJ276249 BC064570	12011	+	TSC_hg19_v1_chr11_+_57508992 BC021122	12159	+	NM_001145101	22411	-	AF132965|TMX2|51075|thioredoxin-related transmembrane protein 2##AF059753|TMX2|51075|thioredoxin-related transmembrane protein 2##BC093062|TMX2|51075|thioredoxin-related transmembrane protein 2##AK075359|TMX2|51075|thioredoxin-related transmembrane protein 2##AK312990|TMX2|51075|thioredoxin-related transmembrane protein 2##AY451237|TMX2|51075|thioredoxin-related transmembrane protein 2##AY451236|TMX2|51075|thioredoxin-related transmembrane protein 2##BC000666|TMX2|51075|thioredoxin-related transmembrane protein 2##AK297688|TMX2|51075|thioredoxin-related transmembrane protein 2##AK298065|TMX2|51075|thioredoxin-related transmembrane protein 2##AK223058|TMX2|51075|thioredoxin-related transmembrane protein 2##AB002382|TMX2-CTNND1|100528016|TMX2-CTNND1 readthrough (non-protein coding)##AY358501|TMX2|51075|thioredoxin-related transmembrane protein 2##NM_001144012|TMX2|51075|thioredoxin-related transmembrane protein 2##NM_015959|TMX2|51075|thioredoxin-related transmembrane protein 2##AY148462|MED19|219541|mediator complex subunit 19##BC009723|MED19|219541|mediator complex subunit 19##BC037223|MED19|219541|mediator complex subunit 19##NM_153450|MED19|219541|mediator complex subunit 19##NM_170746|C11orf31|280636|chromosome 11 open reading frame 31##AF536829|C11orf31|280636|chromosome 11 open reading frame 31##AJ276250|C11orf31|280636|chromosome 11 open reading frame 31##AJ276249|C11orf31|280636|chromosome 11 open reading frame 31##BC064570|C11orf31|280636|chromosome 11 open reading frame 31##BC021122|C11orf31|280636|chromosome 11 open reading frame 31##NM_001145101|BTBD18|643376|BTB (POZ) domain containing 18	0.160806	0.0	
chr12	69751297	69751477	reg1010118.p1	5.140	+	TSC_hg19_v1_chr12_+_69742163 AK310930 AK311779 J03801 FJ795023 BC004147 M21119 M19045 AB463851 DQ892271 DQ895472 U25677	-9178	+	TSC_hg19_v1_chr12_+_69742133 AK130149 NM_000239	-9256	+	TSC_hg19_v1_chr12_+_69633357 BC005000 BC000714 X67337 AK292024 CU674352 CU678850 DQ892159 EU176688	-117998	+	TSC_hg19_v1_chr12_+_69753535 NM_006530 U61384 AJ245746 BC000994 AK001413 AB464359 EU446926	2219	+	TSC_hg19_v1_chr12_+_69864170 NM_001042555 NM_006654 BC021562 AK312477	112755	+	TSC_hg19_v1_chr12_+_69979238 NM_006431 AK290767 BC113514 BC113516 AK297685 AF026166	227837	+	AK311779|LYZ|4069|lysozyme##J03801|LYZ|4069|lysozyme##FJ795023|LYZ|4069|lysozyme##BC004147|LYZ|4069|lysozyme##M21119|LYZ|4069|lysozyme##M19045|LYZ|4069|lysozyme##DQ892271|LYZ|4069|lysozyme##DQ895472|LYZ|4069|lysozyme##U25677|LYZ|4069|lysozyme##AK130149|LYZ|4069|lysozyme##NM_000239|LYZ|4069|lysozyme##BC005000|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##BC000714|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##X67337|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK292024|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##DQ892159|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##EU176688|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##NM_006530|YEATS4|8089|YEATS domain containing 4##U61384|YEATS4|8089|YEATS domain containing 4##AJ245746|YEATS4|8089|YEATS domain containing 4##BC000994|YEATS4|8089|YEATS domain containing 4##AK001413|YEATS4|8089|YEATS domain containing 4##EU446926|YEATS4|8089|YEATS domain containing 4##NM_001042555|FRS2|10818|fibroblast growth factor receptor substrate 2##NM_006654|FRS2|10818|fibroblast growth factor receptor substrate 2##BC021562|FRS2|10818|fibroblast growth factor receptor substrate 2##AK312477|FRS2|10818|fibroblast growth factor receptor substrate 2##NM_006431|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK290767|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##BC113514|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##BC113516|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK297685|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AF026166|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)	0.998999	0.0	
chr19	1663938	1664116	reg1010382.p2	5.140	+	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	-11688	-	AB385055 BC110579 BC110580 M31523 NM_001136139	-13762	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-58554	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	89725	+	TSC_hg19_v1_chr19_+_1776120 AK074606	112160	+	AY302538 NM_001178002 TSC_hg19_v1_chr19_-_1812276 BC035162 NM_138813 AK125225 AK125969	148210	-	M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##NM_001080488|ONECUT3|390874|one cut homeobox 3##AY302538|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_001178002|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##BC035162|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_138813|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125225|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125969|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3	0.0	0.0	
chr4	175803908	175804068	reg1010682.p2	5.140	+	U93917 BC036086 NM_001042543 NM_006529	-53568	-	AK300524 NM_000860 NM_001145816	-360197	-	U63296 X82460 BC007691 BC018986 J05594 L76465 AK058013 AK300940 AK314624 AK300125 TSC_hg19_v1_chr4_-_175443639	-360368	-	NM_001130703 NM_001130704 NM_001130705 NM_014269 AK292410 BC036070	35545	+	CU692222 CU692662 DQ892372 DQ895581 TSC_hg19_v1_chr4_-_176733403	929405	-	BC010461 BC022508 TSC_hg19_v1_chr4_-_176733419 D49958	929453	-	U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3##AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##U63296|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##X82460|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC007691|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC018986|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##J05594|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##L76465|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK058013|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300940|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK314624|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300125|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001130703|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130704|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130705|ADAM29|11086|ADAM metallopeptidase domain 29##NM_014269|ADAM29|11086|ADAM metallopeptidase domain 29##AK292410|ADAM29|11086|ADAM metallopeptidase domain 29##BC036070|ADAM29|11086|ADAM metallopeptidase domain 29##DQ892372|GPM6A|2823|glycoprotein M6A##DQ895581|GPM6A|2823|glycoprotein M6A##BC010461|GPM6A|2823|glycoprotein M6A##BC022508|GPM6A|2823|glycoprotein M6A##D49958|GPM6A|2823|glycoprotein M6A	0.995856	0.0	
chr5	23026388	23026529	reg1010372.p1	5.140	+	L33477 NM_004061	-172728	-	BC047608 TSC_hg19_v1_chr5_-_22853454	-173012	-	TSC_hg19_v1_chr5_-_22212879 AK314800	-813577	-	DQ388610 NM_020227 AK301776	481285	+	NM_006727	1618626	-	BC107594 BC109384 BC113745 AB035302 AK307779 NM_016279 AK308697	4012213	-	L33477|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_004061|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##BC047608|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##AK314800|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##DQ388610|PRDM9|56979|PR domain containing 9##NM_020227|PRDM9|56979|PR domain containing 9##AK301776|PRDM9|56979|PR domain containing 9##NM_006727|CDH10|1008|cadherin 10, type 2 (T2-cadherin)##BC107594|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC109384|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC113745|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AB035302|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK307779|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_016279|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK308697|CDH9|1007|cadherin 9, type 2 (T1-cadherin)	0.691849	0.0	denovo_WM_7:-7:0.628
chr7	130742342	130742521	reg1003945.p1	5.140	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-323504	-	AF294347 AF431815 BC038415 NM_052933	-371076	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-388836	-	TSC_hg19_v1_chr7_-_130792857 BC047367	50428	-	AK294384 NM_001145354	52423	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	270175	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	0.081095	0.0	
chr8	42243045	42243225	reg1011449.p1	5.140	+	AB017788 BC107046 BC107047 AF177397 NM_014420 AK311714 AK301609	-8483	-	NM_002690 AK223537 TSC_hg19_v1_chr8_+_42196014 BC100288 AK294025 AK314976 D29013 M13140 BC106909 AB464039 CR536503 CR541802 L11607	-47078	+	BC090865 TSC_hg19_v1_chr8_+_42128868 AF080158 AK298241 AB209090 BC108694 AK290952 BC144080 BX648165	-114220	+	NM_001135694 NM_005662 TSC_hg19_v1_chr8_+_42249355	6183	+	TSC_hg19_v1_chr8_+_42249386 AF038962	6252	+	TSC_hg19_v1_chr8_+_42249394 AK307224 AK058201 AK308760 BC056870 BC002456	6276	+	AB017788|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107046|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##BC107047|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AF177397|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_014420|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##AK301609|DKK4|27121|dickkopf homolog 4 (Xenopus laevis)##NM_002690|POLB|5423|polymerase (DNA directed), beta##AK223537|POLB|5423|polymerase (DNA directed), beta##BC100288|POLB|5423|polymerase (DNA directed), beta##AK294025|POLB|5423|polymerase (DNA directed), beta##AK314976|POLB|5423|polymerase (DNA directed), beta##D29013|POLB|5423|polymerase (DNA directed), beta##M13140|POLB|5423|polymerase (DNA directed), beta##BC106909|POLB|5423|polymerase (DNA directed), beta##CR536503|POLB|5423|polymerase (DNA directed), beta##CR541802|POLB|5423|polymerase (DNA directed), beta##L11607|POLB|5423|polymerase (DNA directed), beta##BC090865|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AF080158|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK298241|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AB209090|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC108694|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##AK290952|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BC144080|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##BX648165|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001135694|VDAC3|7419|voltage-dependent anion channel 3##NM_005662|VDAC3|7419|voltage-dependent anion channel 3##AF038962|VDAC3|7419|voltage-dependent anion channel 3##AK307224|VDAC3|7419|voltage-dependent anion channel 3##AK058201|VDAC3|7419|voltage-dependent anion channel 3##AK308760|VDAC3|7419|voltage-dependent anion channel 3##BC056870|VDAC3|7419|voltage-dependent anion channel 3	0.0	0.925288	CTCF.p2:11:0.925
chr15	31804067	31804247	reg1008895.p1	5.139	+	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	-184819	+	NM_001243538	-281108	-	GQ502181 HM135791 NM_001252020	-350729	-	AJ430383 NM_130901	143384	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	358672	-	TSC_hg19_v1_chr15_-_32162898 AK126002	358786	-	AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##AK126002|OTUD7A|161725|OTU domain containing 7A	0.018578	0.0	
chr22	40988847	40989027	reg1005569.p2	5.139	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-129507	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-222282	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-222296	+	TSC_hg19_v1_chr22_-_41032681 AF368061	43716	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	43767	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	86284	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	0.0	0.0	
chr10	71267708	71267868	reg1009634.p2	5.138	+	TSC_hg19_v1_chr10_+_71211325 AB529132 CU678410	-56455	+	TSC_hg19_v1_chr10_+_71211220 NM_012339 BC003157 BC004161 AF120266	-56527	+	AK300649 BC033742 AK291996 NM_001057	-91168	-	BC074938 BC074939 BC117488 BC126468 BC069098 AK313952 NM_020999	65312	-	NM_145306 BC013587	122219	+	NM_001130103 NM_080798 NM_080800 NM_080801 NM_080802 NM_080805 TSC_hg19_v1_chr10_+_71561654 BC139913	293869	+	NM_012339|TSPAN15|23555|tetraspanin 15##BC003157|TSPAN15|23555|tetraspanin 15##BC004161|TSPAN15|23555|tetraspanin 15##AF120266|TSPAN15|23555|tetraspanin 15##AK300649|TACR2|6865|tachykinin receptor 2##BC033742|TACR2|6865|tachykinin receptor 2##AK291996|TACR2|6865|tachykinin receptor 2##NM_001057|TACR2|6865|tachykinin receptor 2##BC074938|NEUROG3|50674|neurogenin 3##BC074939|NEUROG3|50674|neurogenin 3##BC117488|NEUROG3|50674|neurogenin 3##BC126468|NEUROG3|50674|neurogenin 3##BC069098|NEUROG3|50674|neurogenin 3##AK313952|NEUROG3|50674|neurogenin 3##NM_020999|NEUROG3|50674|neurogenin 3##NM_145306|C10orf35|219738|chromosome 10 open reading frame 35##BC013587|C10orf35|219738|chromosome 10 open reading frame 35##NM_001130103|COL13A1|1305|collagen, type XIII, alpha 1##NM_080798|COL13A1|1305|collagen, type XIII, alpha 1##NM_080800|COL13A1|1305|collagen, type XIII, alpha 1##NM_080801|COL13A1|1305|collagen, type XIII, alpha 1##NM_080802|COL13A1|1305|collagen, type XIII, alpha 1##NM_080805|COL13A1|1305|collagen, type XIII, alpha 1##BC139913|COL13A1|1305|collagen, type XIII, alpha 1	0.0	0.353776	CTCF.p2:9:0.354
chr1	32871748	32871921	reg1009650.p2	5.138	+	CR457252 TSC_hg19_v1_chr1_-_32860030 BC010573 CR749228 BX641056 AK300231 BC026322 AK297604 AK300306 AK001138 AK225717 AK293454 BC028381 AK021440 AK297352 AK225026 AK304477 AK316172 NM_001143888 NM_001143889 NM_001143890 NM_018045	-11797	-	NM_001167676	-43991	-	BC035354 NM_052841	-44005	+	TSC_hg19_v1_chr1_+_32930659 AK092326 AX747483 NM_001145720	58818	+	NM_001040441	132937	+	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	133210	+	CR457252|BSDC1|55108|BSD domain containing 1##BC010573|BSDC1|55108|BSD domain containing 1##CR749228|BSDC1|55108|BSD domain containing 1##BX641056|BSDC1|55108|BSD domain containing 1##AK300231|BSDC1|55108|BSD domain containing 1##BC026322|BSDC1|55108|BSD domain containing 1##AK297604|BSDC1|55108|BSD domain containing 1##AK300306|BSDC1|55108|BSD domain containing 1##AK001138|BSDC1|55108|BSD domain containing 1##AK225717|BSDC1|55108|BSD domain containing 1##AK293454|BSDC1|55108|BSD domain containing 1##BC028381|BSDC1|55108|BSD domain containing 1##AK021440|BSDC1|55108|BSD domain containing 1##AK297352|BSDC1|55108|BSD domain containing 1##AK225026|BSDC1|55108|BSD domain containing 1##AK304477|BSDC1|55108|BSD domain containing 1##AK316172|BSDC1|55108|BSD domain containing 1##NM_001143888|BSDC1|55108|BSD domain containing 1##NM_001143889|BSDC1|55108|BSD domain containing 1##NM_001143890|BSDC1|55108|BSD domain containing 1##NM_018045|BSDC1|55108|BSD domain containing 1##NM_001167676|LOC100128071|100128071|uncharacterized LOC100128071##BC035354|TSSK3|81629|testis-specific serine kinase 3##NM_052841|TSSK3|81629|testis-specific serine kinase 3##NM_001145720|ZBTB8B|728116|zinc finger and BTB domain containing 8B##NM_001040441|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A	0.995697	0.0	denovo_WM_7:-41:0.983
chr18	11883361	11883541	reg1008851.p2	5.138	+	NM_020412 TSC_hg19_v1_chr18_+_11851412 AK314068 BC065933 BC012733 AF281064 CU680382	-32002	+	L10665 TSC_hg19_v1_chr18_+_11752245	-131236	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	-131936	+	BC002877 TSC_hg19_v1_chr18_-_11908317 AK054639 AX775859 DQ786245 BC073994 AK309948 AF289560	24855	-	AX775853 AX775855 AL833636 TSC_hg19_v1_chr18_-_11908364	24905	-	AF363484 NM_001242904 NM_023075	25335	-	NM_020412|CHMP1B|57132|charged multivesicular body protein 1B##AK314068|CHMP1B|57132|charged multivesicular body protein 1B##BC065933|CHMP1B|57132|charged multivesicular body protein 1B##BC012733|CHMP1B|57132|charged multivesicular body protein 1B##AF281064|CHMP1B|57132|charged multivesicular body protein 1B##L10665|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC002877|MPPE1|65258|metallophosphoesterase 1##AK054639|MPPE1|65258|metallophosphoesterase 1##DQ786245|MPPE1|65258|metallophosphoesterase 1##BC073994|MPPE1|65258|metallophosphoesterase 1##AK309948|MPPE1|65258|metallophosphoesterase 1##AF289560|MPPE1|65258|metallophosphoesterase 1##AL833636|MPPE1|65258|metallophosphoesterase 1##AF363484|MPPE1|65258|metallophosphoesterase 1##NM_001242904|MPPE1|65258|metallophosphoesterase 1##NM_023075|MPPE1|65258|metallophosphoesterase 1	0.984116	0.0	denovo_WM_7:4:0.606	denovo_WM_7:5:0.226
chr7	69126501	69126657	reg1008889.p1	5.138	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-61991	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-62250	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-62743	+	TSC_hg19_v1_chr7_+_70231164 AK296981	1104626	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1471209	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2675199	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.0	0.0	
chr1	116518878	116518972	reg1005148.p2	5.137	+	BC096359 BC096360 TSC_hg19_v1_chr1_-_116383744 M96740 NM_005599	-135205	-	AK307156 TSC_hg19_v1_chr1_-_116383325 NM_001111061 AK312849	-135583	-	BC096361 BC096362 TSC_hg19_v1_chr1_+_116380417 AB007959 BC028729	-138468	+	NM_018420 BC026358 TSC_hg19_v1_chr1_+_116519161	218	+	TSC_hg19_v1_chr1_+_116519194 BC070033 AY358258 AY145501 CU693234 DQ892367 DQ895576	304	+	AK096035 NM_152367	135450	+	BC096359|NHLH2|4808|nescient helix loop helix 2##BC096360|NHLH2|4808|nescient helix loop helix 2##M96740|NHLH2|4808|nescient helix loop helix 2##NM_005599|NHLH2|4808|nescient helix loop helix 2##NM_001111061|NHLH2|4808|nescient helix loop helix 2##AK312849|NHLH2|4808|nescient helix loop helix 2##AB007959|NHLH2|4808|nescient helix loop helix 2##BC028729|NHLH2|4808|nescient helix loop helix 2##NM_018420|SLC22A15|55356|solute carrier family 22, member 15##BC026358|SLC22A15|55356|solute carrier family 22, member 15##BC070033|SLC22A15|55356|solute carrier family 22, member 15##AY358258|SLC22A15|55356|solute carrier family 22, member 15##AY145501|SLC22A15|55356|solute carrier family 22, member 15##DQ892367|SLC22A15|55356|solute carrier family 22, member 15##DQ895576|SLC22A15|55356|solute carrier family 22, member 15##AK096035|MAB21L3|126868|mab-21-like 3 (C. elegans)##NM_152367|MAB21L3|126868|mab-21-like 3 (C. elegans)	0.0	0.0	
chr11	62691794	62691974	reg1001987.p2	5.137	+	BC022984 NM_000738 AJ006520 TSC_hg19_v1_chr11_-_62689135	-2811	-	BC007740 AK312374 TSC_hg19_v1_chr11_-_62688827	-3101	-	TSC_hg19_v1_chr11_+_62649170 AK308797 AK311592 AF055031	-42692	+	AK298374 AF057039 AF104038 AF124373 AB009698 AB009697 AK091879 BC033682 AK055764 NM_004790 NM_153276 NM_153277 NM_153278	60548	-	AK307850 AK298341 AB042505 AK298351 AK313187 BC022387 NM_001184732 NM_001184733 NM_001184736 NM_004254	91414	-	BC034394 NM_001136506	219808	-	BC022984|CHRM1|1128|cholinergic receptor, muscarinic 1##NM_000738|CHRM1|1128|cholinergic receptor, muscarinic 1##AJ006520|CHRM1|1128|cholinergic receptor, muscarinic 1##BC007740|CHRM1|1128|cholinergic receptor, muscarinic 1##AK312374|CHRM1|1128|cholinergic receptor, muscarinic 1##AK308797|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK311592|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AF055031|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK298374|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF057039|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF104038|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF124373|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AB009698|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AB009697|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK091879|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##BC033682|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK055764|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_004790|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153276|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153277|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153278|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK307850|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298341|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AB042505|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298351|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK313187|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##BC022387|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184732|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184733|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184736|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_004254|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##BC034394|SLC22A24|283238|solute carrier family 22, member 24##NM_001136506|SLC22A24|283238|solute carrier family 22, member 24	0.999923	0.0	
chr12	10892867	10892998	reg1010101.p1	5.137	+	TSC_hg19_v1_chr12_-_10875923 X95325 BC015913 BC015564 BC021926 BC009744 M24069 BC008801 X72712 AK314846 NM_001145426 NM_003651	-17031	-	TSC_hg19_v1_chr12_-_10875782 AB463536 DQ892686 DQ895930	-17190	-	AF251059 NM_018423	-66042	-	BC069091 AB529261 BC093992 BC113561 NM_023919	62264	-	BC069084 BC069551 BC096701 BC096735 BC098167 BC098353 NM_023918 AB529262 CU686904	66646	-	BC069066 AB529263 BC095519 NM_023917	69787	-	X95325|CSDA|8531|cold shock domain protein A##BC015913|CSDA|8531|cold shock domain protein A##BC015564|CSDA|8531|cold shock domain protein A##BC021926|CSDA|8531|cold shock domain protein A##BC009744|CSDA|8531|cold shock domain protein A##M24069|CSDA|8531|cold shock domain protein A##BC008801|CSDA|8531|cold shock domain protein A##X72712|CSDA|8531|cold shock domain protein A##AK314846|CSDA|8531|cold shock domain protein A##NM_001145426|CSDA|8531|cold shock domain protein A##NM_003651|CSDA|8531|cold shock domain protein A##DQ892686|CSDA|8531|cold shock domain protein A##DQ895930|CSDA|8531|cold shock domain protein A##AF251059|STYK1|55359|serine/threonine/tyrosine kinase 1##NM_018423|STYK1|55359|serine/threonine/tyrosine kinase 1##BC069091|TAS2R7|50837|taste receptor, type 2, member 7##BC093992|TAS2R7|50837|taste receptor, type 2, member 7##BC113561|TAS2R7|50837|taste receptor, type 2, member 7##NM_023919|TAS2R7|50837|taste receptor, type 2, member 7##BC069084|TAS2R8|50836|taste receptor, type 2, member 8##BC069551|TAS2R8|50836|taste receptor, type 2, member 8##BC096701|TAS2R8|50836|taste receptor, type 2, member 8##BC096735|TAS2R8|50836|taste receptor, type 2, member 8##BC098167|TAS2R8|50836|taste receptor, type 2, member 8##BC098353|TAS2R8|50836|taste receptor, type 2, member 8##NM_023918|TAS2R8|50836|taste receptor, type 2, member 8##BC069066|TAS2R9|50835|taste receptor, type 2, member 9##BC095519|TAS2R9|50835|taste receptor, type 2, member 9##NM_023917|TAS2R9|50835|taste receptor, type 2, member 9	0.927411	0.0	denovo_WM_7:19:0.278	denovo_WM_7:20:0.311	denovo_WM_7:21:0.233
chr1	233080000	233080135	reg1010175.p1	5.137	+	AK290216 TSC_hg19_v1_chr1_+_232941173 BC036663 AB037804	-138916	+	NM_019090 BC109122	-139363	+	TSC_hg19_v1_chr1_-_232878472 AK093200	-201610	-	AK311229 AK316591 TSC_hg19_v1_chr1_+_233086356 BC005102 NM_032324	6277	+	TSC_hg19_v1_chr1_+_233086381 AF416713	6322	+	NM_014801 TSC_hg19_v1_chr1_-_233431485 AK092353 AX747494	351416	-	AK290216|KIAA1383|54627|KIAA1383##BC036663|KIAA1383|54627|KIAA1383##AB037804|KIAA1383|54627|KIAA1383##NM_019090|KIAA1383|54627|KIAA1383##BC109122|KIAA1383|54627|KIAA1383##AK311229|NTPCR|84284|nucleoside-triphosphatase, cancer-related##AK316591|NTPCR|84284|nucleoside-triphosphatase, cancer-related##BC005102|NTPCR|84284|nucleoside-triphosphatase, cancer-related##NM_032324|NTPCR|84284|nucleoside-triphosphatase, cancer-related##AF416713|NTPCR|84284|nucleoside-triphosphatase, cancer-related##NM_014801|PCNXL2|80003|pecanex-like 2 (Drosophila)##AK092353|PCNXL2|80003|pecanex-like 2 (Drosophila)	0.997035	0.0	denovo_WM_7:5:0.900
chr15	35261936	35262101	reg1010462.p1	5.137	+	AB384497 AK291615 BC127111 BC127112 TSC_hg19_v1_chr15_-_35261899 AB011132 AK315815 BX647820 EF553519 NM_014691	-91	-	AK129892 AK056592 AK129902 AK290616 TSC_hg19_v1_chr15_-_35087751 BC009978 NM_005159	-174181	-	BC069131 BC069339 NM_020660 BC112110 BC112114 BC143788	-215284	-	TSC_hg19_v1_chr15_-_35280489 BC071603 AK291438	18436	-	NM_014106 TSC_hg19_v1_chr15_-_35280498	18494	-	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	576368	-	AK291615|AQR|9716|aquarius homolog (mouse)##BC127111|AQR|9716|aquarius homolog (mouse)##BC127112|AQR|9716|aquarius homolog (mouse)##AB011132|AQR|9716|aquarius homolog (mouse)##AK315815|AQR|9716|aquarius homolog (mouse)##BX647820|AQR|9716|aquarius homolog (mouse)##EF553519|AQR|9716|aquarius homolog (mouse)##NM_014691|AQR|9716|aquarius homolog (mouse)##AK129892|ACTC1|70|actin, alpha, cardiac muscle 1##AK056592|ACTC1|70|actin, alpha, cardiac muscle 1##AK129902|ACTC1|70|actin, alpha, cardiac muscle 1##AK290616|ACTC1|70|actin, alpha, cardiac muscle 1##BC009978|ACTC1|70|actin, alpha, cardiac muscle 1##NM_005159|ACTC1|70|actin, alpha, cardiac muscle 1##BC069131|GJD2|57369|gap junction protein, delta 2, 36kDa##BC069339|GJD2|57369|gap junction protein, delta 2, 36kDa##NM_020660|GJD2|57369|gap junction protein, delta 2, 36kDa##BC112110|GJD2|57369|gap junction protein, delta 2, 36kDa##BC112114|GJD2|57369|gap junction protein, delta 2, 36kDa##BC143788|GJD2|57369|gap junction protein, delta 2, 36kDa##BC071603|ZNF770|54989|zinc finger protein 770##AK291438|ZNF770|54989|zinc finger protein 770##NM_014106|ZNF770|54989|zinc finger protein 770##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4	0.0	0.036279	
chr3	134935550	134935696	reg1007184.p1	5.137	+	TSC_hg19_v1_chr3_+_134514301 BC111744	-421322	+	TSC_hg19_v1_chr3_+_134514101 NM_004441 AK291208 AK309741 L40636	-421472	+	BC136349 AK293840 AK294500 AK090526 AK126993 AX746495 NM_178554 TSC_hg19_v1_chr3_-_134369865	-565778	-	TSC_hg19_v1_chr3_+_135684569 NM_001190447 NM_002718 AK293012 BC015034 BC065531 AK298059 AK314243	748908	+	BC029409 TSC_hg19_v1_chr3_+_135684606 L07590	748997	+	NM_181897 AK316258 L12146	805995	+	BC111744|EPHB1|2047|EPH receptor B1##NM_004441|EPHB1|2047|EPH receptor B1##AK291208|EPHB1|2047|EPH receptor B1##AK309741|EPHB1|2047|EPH receptor B1##L40636|EPHB1|2047|EPH receptor B1##BC136349|KY|339855|kyphoscoliosis peptidase##AK293840|KY|339855|kyphoscoliosis peptidase##AK294500|KY|339855|kyphoscoliosis peptidase##AK090526|KY|339855|kyphoscoliosis peptidase##AK126993|KY|339855|kyphoscoliosis peptidase##NM_178554|KY|339855|kyphoscoliosis peptidase##NM_001190447|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_002718|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK293012|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC015034|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC065531|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK298059|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK314243|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC029409|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L07590|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha	0.988184	0.0	
chr6	22844639	22844791	reg1011318.p2	5.137	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	-274990	+	X54394 X54393 GQ305133 M58594 NM_001163558	-541668	-	BC015850 NM_000948	-546986	-	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	1281715	+	AF181722 NM_181337	1512415	+	AF181721 NM_016356	1513564	-	NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1##AF181721|DCDC2|51473|doublecortin domain containing 2##NM_016356|DCDC2|51473|doublecortin domain containing 2	1.07132	0.0	denovo_WM_7:-43:0.840
chr16	21507445	21507625	reg1010112.p1	5.136	+	BC036263 NM_130464	-70878	-	BX648477 NM_001014444 NM_001888	-193148	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-217887	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	24217	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	103355	+	AF151839 TSC_hg19_v1_chr16_+_21611174	103619	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	1.997792	0.0	denovo_WM_7:-1:0.366	denovo_WM_7:-2:0.274	denovo_WM_7:-18:0.291	denovo_WM_7:-19:0.382
chr3	183270633	183270813	reg1001620.p3	5.136	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-105293	+	NM_015078 BC064632 AK124500 AK310962	-124784	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-299117	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	2729	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	82677	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	144899	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	0.0	0.0	
chr7	17098307	17098416	reg1010080.p2	5.136	+	AY359065 BC058284 NM_176813	-176757	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-253690	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-304905	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	239908	+	TSC_hg19_v1_chr7_+_17382906 BC021696	284545	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	881688	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.995218	0.0	denovo_WM_7:-28:0.321	denovo_WM_7:-29:0.650
chr10	110306822	110307002	reg1009375.p1	5.135	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-1382536	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1847853	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3905867	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1376297	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1376365	-	NM_019903 AB209810 BC057285	1458869	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	2.02515	0.0	denovo_WM_7:20:0.651	denovo_WM_7:21:0.326	denovo_WM_7:35:0.332	denovo_WM_7:36:0.657
chr11	4118462	4118608	reg1011306.p1	5.135	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	-2376	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	-2469	+	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	-2546	+	BC140928 NM_001005161	271080	-	TSC_hg19_v1_chr11_-_4414904 BC010861 M62800 AK225564 NM_003141	296371	-	BC137247 BC137248 NM_001005172	351989	+	AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##BC140928|OR52B4|143496|olfactory receptor, family 52, subfamily B, member 4##NM_001005161|OR52B4|143496|olfactory receptor, family 52, subfamily B, member 4##BC010861|TRIM21|6737|tripartite motif containing 21##M62800|TRIM21|6737|tripartite motif containing 21##AK225564|TRIM21|6737|tripartite motif containing 21##NM_003141|TRIM21|6737|tripartite motif containing 21##BC137247|OR52K2|119774|olfactory receptor, family 52, subfamily K, member 2##BC137248|OR52K2|119774|olfactory receptor, family 52, subfamily K, member 2##NM_001005172|OR52K2|119774|olfactory receptor, family 52, subfamily K, member 2	0.998256	0.0	
chr1	178653947	178654055	reg1010746.p2	5.135	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	-171735	+	AF047711 NM_004841 AK290308	-343367	+	BC110611 TSC_hg19_v1_chr1_+_178063651	-590360	+	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	40372	+	AK223467 BC050640 AB056476 TSC_hg19_v1_chr1_-_178840178 AY358278 NM_004673	186145	-	TSC_hg19_v1_chr1_+_178995028 AB007944	341019	+	AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##AF047711|RASAL2|9462|RAS protein activator like 2##NM_004841|RASAL2|9462|RAS protein activator like 2##AK290308|RASAL2|9462|RAS protein activator like 2##BC110611|RASAL2|9462|RAS protein activator like 2##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK223467|ANGPTL1|9068|angiopoietin-like 1##BC050640|ANGPTL1|9068|angiopoietin-like 1##AB056476|ANGPTL1|9068|angiopoietin-like 1##AY358278|ANGPTL1|9068|angiopoietin-like 1##NM_004673|ANGPTL1|9068|angiopoietin-like 1##AB007944|FAM20B|9917|family with sequence similarity 20, member B	0.0	0.0	
chr6	154932457	154932625	reg1010578.p1	5.135	+	D28359 TSC_hg19_v1_chr6_+_154897429	-35111	+	TSC_hg19_v1_chr6_-_154831788 AK055911	-100739	-	TSC_hg19_v1_chr6_-_154831721 AY328891 AY328892 AY328893 NM_173515	-100806	-	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	121984	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	122013	+	TSC_hg19_v1_chr6_+_155054812 AB029039	122284	+	AK055911|CNKSR3|154043|CNKSR family member 3##AY328891|CNKSR3|154043|CNKSR family member 3##AY328892|CNKSR3|154043|CNKSR family member 3##AY328893|CNKSR3|154043|CNKSR family member 3##NM_173515|CNKSR3|154043|CNKSR family member 3##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##AB029039|SCAF8|22828|SR-related CTD-associated factor 8	1.029701	0.0	denovo_WM_7:16:0.867
chr12	95264405	95264541	reg1007785.p1	5.134	+	EU831778 EU831856 BC040535 NM_020698	-220209	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	-410741	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	-410831	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	132997	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	133043	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	202825	-	EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1	0.999652	0.0	
chr15	67378385	67378507	reg1002311.p2	5.134	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-20045	+	TSC_hg19_v1_chr15_+_67358179 AK290881	-20271	+	NM_001142861 U59914	-377517	+	NM_001145102 AK316017	39677	+	AK298139 NM_001145103	51912	+	NM_001145104 AK300614 AK301348	80050	+	NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##AK290881|SMAD3|4088|SMAD family member 3##NM_001142861|SMAD6|4091|SMAD family member 6##U59914|SMAD6|4091|SMAD family member 6##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3	0.0	0.0	
chr17	9832272	9832402	reg1010870.p1	5.134	+	AB001838 BT009838 AB528320 DQ892822 DQ896068 BC001720 S62028 S45545 AB593156 NM_002903 S43855	-23748	-	TSC_hg19_v1_chr17_+_9745847 BC041176 BC019818	-86478	+	AF105367 BC096261 BC096262 BC096264 NM_004246 BC096263	-102955	+	AJ224876 NM_003644 AK293834 AK315162	30434	-	AB385324 BT006891 DQ892802 DQ895910 CU674584 AB209030 AK294829 TSC_hg19_v1_chr17_-_9923322	90926	-	TSC_hg19_v1_chr17_-_9923331 AK309722	91055	-	AB001838|RCVRN|5957|recoverin##BT009838|RCVRN|5957|recoverin##DQ892822|RCVRN|5957|recoverin##DQ896068|RCVRN|5957|recoverin##BC001720|RCVRN|5957|recoverin##S62028|RCVRN|5957|recoverin##S45545|RCVRN|5957|recoverin##AB593156|RCVRN|5957|recoverin##NM_002903|RCVRN|5957|recoverin##S43855|RCVRN|5957|recoverin##BC041176|GLP2R|9340|glucagon-like peptide 2 receptor##BC019818|GLP2R|9340|glucagon-like peptide 2 receptor##AF105367|GLP2R|9340|glucagon-like peptide 2 receptor##BC096261|GLP2R|9340|glucagon-like peptide 2 receptor##BC096262|GLP2R|9340|glucagon-like peptide 2 receptor##BC096264|GLP2R|9340|glucagon-like peptide 2 receptor##NM_004246|GLP2R|9340|glucagon-like peptide 2 receptor##BC096263|GLP2R|9340|glucagon-like peptide 2 receptor##AJ224876|GAS7|8522|growth arrest-specific 7##NM_003644|GAS7|8522|growth arrest-specific 7##AK293834|GAS7|8522|growth arrest-specific 7##AK315162|GAS7|8522|growth arrest-specific 7##BT006891|GAS7|8522|growth arrest-specific 7##DQ892802|GAS7|8522|growth arrest-specific 7##DQ895910|GAS7|8522|growth arrest-specific 7##AB209030|GAS7|8522|growth arrest-specific 7##AK294829|GAS7|8522|growth arrest-specific 7##AK309722|GAS7|8522|growth arrest-specific 7	0.0	0.050276	
chr2	172106281	172106414	reg1009348.p1	5.134	+	AK090779 NM_001136554	-18524	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-88848	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-89251	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	184179	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	184415	+	TSC_hg19_v1_chr2_+_172290824 CR933646	184464	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	0.991187	0.0	denovo_WM_7:-1:0.487
chr2	24047859	24048039	reg1007145.p2	5.134	+	NM_052920	-439652	+	TSC_hg19_v1_chr2_-_21266940 AK290844 NM_000384 X04506 X04714	-2781020	-	TSC_hg19_v1_chr2_-_21266896 J02610 M12681	-2781050	-	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	101997	-	TSC_hg19_v1_chr2_+_24150144 BC037901	102208	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	115422	+	NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##AK290844|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_000384|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04506|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04714|APOB|338|apolipoprotein B (including Ag(x) antigen)##J02610|APOB|338|apolipoprotein B (including Ag(x) antigen)##M12681|APOB|338|apolipoprotein B (including Ag(x) antigen)##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037901|UBXN2A|165324|UBX domain protein 2A##BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A	0.996142	0.0	
chr5	159573580	159573713	reg1007149.p1	5.134	+	TSC_hg19_v1_chr5_-_159546405 AB067522 BC035076 BC105110 BC143437 NM_001130864 NM_052927	-27187	-	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	-137479	+	TSC_hg19_v1_chr5_+_159436145 AK315262	-137499	+	DQ132786 NM_001130958	40727	+	NM_001040442 AB528665	52434	+	NM_001445 X90908 U19869 CU692652	82853	+	AB067522|PWWP2A|114825|PWWP domain containing 2A##BC035076|PWWP2A|114825|PWWP domain containing 2A##BC105110|PWWP2A|114825|PWWP domain containing 2A##BC143437|PWWP2A|114825|PWWP domain containing 2A##NM_001130864|PWWP2A|114825|PWWP domain containing 2A##NM_052927|PWWP2A|114825|PWWP domain containing 2A##AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal	0.999414	0.0	
chr10	6341991	6342171	reg1009070.p2	5.133	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-97205	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-155169	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-155197	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	280180	-	TSC_hg19_v1_chr10_+_6622460 AY007155	280399	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1109169	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.0	
chr12	122751068	122751196	reg1005372.p1	5.133	+	TSC_hg19_v1_chr12_-_122751044 NM_022916	-77	-	AB527663 EU176253 TSC_hg19_v1_chr12_-_122750984 AL833244 BC016617 AF439857 AK026840 AK315545	-134	-	BC046209 NM_019887 NM_138929	-39089	-	AF045652 AF045653 AY563000 TSC_hg19_v1_chr12_-_122839059	87905	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	156105	-	TSC_hg19_v1_chr12_-_122985404 BC065918	234295	-	NM_022916|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##EU176253|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC016617|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AF439857|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AK026840|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AK315545|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC046209|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_019887|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_138929|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AF045652|CLIP1|6249|CAP-GLY domain containing linker protein 1##AF045653|CLIP1|6249|CAP-GLY domain containing linker protein 1##AY563000|CLIP1|6249|CAP-GLY domain containing linker protein 1##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8	0.0	0.0	
chr20	45890818	45890926	reg1007769.p1	5.133	+	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-367320	+	TSC_hg19_v1_chr20_+_45523505 BC008803	-367364	+	TSC_hg19_v1_chr20_+_45523254 BC013882 NM_005244 NM_172110	-367590	+	TSC_hg19_v1_chr20_-_45927496 BC030721	36697	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	85775	-	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	94616	-	AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC008803|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC013882|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_005244|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_172110|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8	0.854716	0.0	denovo_WM_7:-50:0.629
chr2	87253226	87253343	reg1010277.p1	5.133	+	BC107767 BC109248 BC070296 BC005379 NM_001032392 M93143 NM_002665 BC022294	-4326	-	CR749330 NM_001024457	-108547	+	TSC_hg19_v1_chr2_+_87140905 AK302429 NM_001078170	-112365	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	50048	-	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	501733	+	TSC_hg19_v1_chr2_+_87755060 AK312010	501776	+	BC107767|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC022294|PLGLB2|5342|plasminogen-like B2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##AK302429|RGPD2|729857|RANBP2-like and GRIP domain containing 2##NM_001078170|RGPD2|729857|RANBP2-like and GRIP domain containing 2##BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152	1.054923	0.161553	denovo_WM_7:16:0.727
chr14	103893762	103893926	reg1011346.p1	5.132	+	TSC_hg19_v1_chr14_+_103851775 AF465413 BC024773 U64205	-41958	+	TSC_hg19_v1_chr14_+_103851772 BX161395	-42074	+	TSC_hg19_v1_chr14_+_103851700 NM_001128918 NM_001128919 NM_001128920 NM_001128921 NM_002376	-42141	+	CR542268 CU676412 M16364 TSC_hg19_v1_chr14_-_103988931	95036	-	M16451 L47647 TSC_hg19_v1_chr14_-_103989168 BC004914 BC019259 BC008323 BC001190 BC019281 BC010002 AK290101 AK312282 AK298198	95299	-	NM_001823 TSC_hg19_v1_chr14_-_103989206	95358	-	AF465413|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BC024773|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##U64205|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BX161395|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##CR542268|CKB|1152|creatine kinase, brain##M16364|CKB|1152|creatine kinase, brain##M16451|CKB|1152|creatine kinase, brain##L47647|CKB|1152|creatine kinase, brain##BC004914|CKB|1152|creatine kinase, brain##BC019259|CKB|1152|creatine kinase, brain##BC008323|CKB|1152|creatine kinase, brain##BC001190|CKB|1152|creatine kinase, brain##BC019281|CKB|1152|creatine kinase, brain##BC010002|CKB|1152|creatine kinase, brain##AK290101|CKB|1152|creatine kinase, brain##AK312282|CKB|1152|creatine kinase, brain##AK298198|CKB|1152|creatine kinase, brain##NM_001823|CKB|1152|creatine kinase, brain	0.996516	0.0	denovo_WM_7:0:0.449	denovo_WM_7:-1:0.449
chr17	56023875	56024006	reg1007031.p1	5.132	+	AK000746 NM_017949	-43191	-	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	-96536	-	AK093888 AX748353 NM_170721	-689567	+	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	8736	-	TSC_hg19_v1_chr17_+_56065413 AB593183	41534	+	AB464342 D28118 TSC_hg19_v1_chr17_-_56065593	41594	-	AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC056882|CUEDC1|404093|CUE domain containing 1##D28118|VEZF1|7716|vascular endothelial zinc finger 1	0.930004	0.0	denovo_WM_7:-20:0.286	denovo_WM_7:-21:0.587
chr4	41174912	41175051	reg1009899.p1	5.132	+	BC088372 TSC_hg19_v1_chr4_-_40936716	-238303	-	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	-315806	-	BC042401 NM_024677 BC036568 AK024063	-423035	+	TSC_hg19_v1_chr4_-_41216560 BC027946 AK304247 AK226179 NM_001166050 NM_004307 NM_173075	41588	-	TSC_hg19_v1_chr4_+_41258897 NM_004181	83915	+	TSC_hg19_v1_chr4_+_41258913 BC000332 BC018838	83937	+	BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##BC027946|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK304247|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK226179|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166050|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004307|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_173075|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004181|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC000332|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC018838|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	0.0	0.0	
chr10	134451375	134451491	reg1008943.p2	5.131	+	TSC_hg19_v1_chr10_+_134351305 BC096280 BC096281 BC117515 AF273055 NM_005539	-100121	+	TSC_hg19_v1_chr10_+_134258657 BC030794 NM_173541	-192750	+	TSC_hg19_v1_chr10_+_134210703 NM_001098637 NM_138499 BC068574	-240724	+	TSC_hg19_v1_chr10_-_134599477 BC101635 BC104823 NM_177400	148073	-	CU692234 BC044661 AK098820 TSC_hg19_v1_chr10_-_134756065 NM_001200049 NM_173572	304605	-	NM_001083909 TSC_hg19_v1_chr10_+_134901429 AK124728	450024	+	BC096280|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC096281|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC117515|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##AF273055|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##NM_005539|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC030794|C10orf91|170393|chromosome 10 open reading frame 91##NM_173541|C10orf91|170393|chromosome 10 open reading frame 91##NM_001098637|PWWP2B|170394|PWWP domain containing 2B##NM_138499|PWWP2B|170394|PWWP domain containing 2B##BC068574|PWWP2B|170394|PWWP domain containing 2B##BC101635|NKX6-2|84504|NK6 homeobox 2##BC104823|NKX6-2|84504|NK6 homeobox 2##NM_177400|NKX6-2|84504|NK6 homeobox 2##BC044661|TTC40|54777|tetratricopeptide repeat domain 40##AK098820|TTC40|54777|tetratricopeptide repeat domain 40##NM_001200049|TTC40|54777|tetratricopeptide repeat domain 40##NM_173572|TTC40|54777|tetratricopeptide repeat domain 40##NM_001083909|GPR123|84435|G protein-coupled receptor 123##AK124728|GPR123|84435|G protein-coupled receptor 123	0.860123	0.361786	denovo_WM_7:-21:0.782	CTCF.p2:70:0.362
chr15	75992763	75992874	reg1009337.p2	5.131	+	BC018775 NM_153271 AL833039 EF219141 DQ891695 DQ895211 EU831407 EU831499	-51424	+	AB463774 AM393583 CU675427 CU680036 TSC_hg19_v1_chr15_-_75932566 BC020557 BC011745 AY050497 AL136913 BC006487 AK001830 AK223121 NM_018285	-60232	-	NM_001042588	-74100	-	AB462981 AY359468 X96753 TSC_hg19_v1_chr15_-_76005157	12310	-	TSC_hg19_v1_chr15_-_76005190 NM_001897	12377	-	TSC_hg19_v1_chr15_+_76016306 BC039862 NM_175881	23496	+	BC018775|SNX33|257364|sorting nexin 33##NM_153271|SNX33|257364|sorting nexin 33##AL833039|SNX33|257364|sorting nexin 33##EF219141|SNX33|257364|sorting nexin 33##DQ891695|SNX33|257364|sorting nexin 33##DQ895211|SNX33|257364|sorting nexin 33##EU831407|SNX33|257364|sorting nexin 33##EU831499|SNX33|257364|sorting nexin 33##AM393583|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC020557|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC011745|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AY050497|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AL136913|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC006487|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AK001830|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AK223121|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##NM_018285|IMP3|55272|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)##NM_001042588|SNUPN|10073|snurportin 1##AY359468|CSPG4|1464|chondroitin sulfate proteoglycan 4##X96753|CSPG4|1464|chondroitin sulfate proteoglycan 4##NM_001897|CSPG4|1464|chondroitin sulfate proteoglycan 4##BC039862|ODF3L1|161753|outer dense fiber of sperm tails 3-like 1##NM_175881|ODF3L1|161753|outer dense fiber of sperm tails 3-like 1	0.0	0.0	
chr16	2179105	2179251	reg1002373.p2	5.131	+	AB209025 TSC_hg19_v1_chr16_-_2159898	-19300	-	TSC_hg19_v1_chr16_+_2128185 AK125096	-50966	+	TSC_hg19_v1_chr16_+_2097985 AB210000 NM_000548 NM_001077183 NM_001114382 AK294548 AK295672 AK299343 BC150300 BX647816	-81167	+	U24497 TSC_hg19_v1_chr16_-_2185898 L33243 NM_000296 NM_001009944	6721	-	TSC_hg19_v1_chr16_+_2198609 AY646153 BC066913 NM_014353	19450	+	TSC_hg19_v1_chr16_+_2198707 BC007681	19567	+	AB209025|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AK125096|TSC2|7249|tuberous sclerosis 2##AB210000|TSC2|7249|tuberous sclerosis 2##NM_000548|TSC2|7249|tuberous sclerosis 2##NM_001077183|TSC2|7249|tuberous sclerosis 2##NM_001114382|TSC2|7249|tuberous sclerosis 2##AK295672|TSC2|7249|tuberous sclerosis 2##AK299343|TSC2|7249|tuberous sclerosis 2##BC150300|TSC2|7249|tuberous sclerosis 2##BX647816|TSC2|7249|tuberous sclerosis 2##U24497|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##L33243|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_000296|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_001009944|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##AY646153|RAB26|25837|RAB26, member RAS oncogene family##BC066913|RAB26|25837|RAB26, member RAS oncogene family##NM_014353|RAB26|25837|RAB26, member RAS oncogene family##BC007681|RAB26|25837|RAB26, member RAS oncogene family	0.992462	0.0	denovo_WM_7:-3:0.238	denovo_WM_7:-4:0.238	denovo_WM_7:-5:0.238	denovo_WM_7:-6:0.238
chr16	50235798	50235955	reg1008741.p2	5.131	+	TSC_hg19_v1_chr16_+_50186838 AK300918 NM_001040284 NM_001040285	-49041	+	TSC_hg19_v1_chr16_+_50099915 AK289949 BC018730 BC033077	-135916	+	NM_182922 TSC_hg19_v1_chr16_+_50099906 AF462442 AK000725 BC014415	-135983	+	AK093706 TSC_hg19_v1_chr16_+_50300480 BC028085	64600	+	TSC_hg19_v1_chr16_+_50308041 BC039891	72177	+	NM_001114 D25538	85947	+	AK300918|PAPD5|64282|PAP associated domain containing 5##NM_001040284|PAPD5|64282|PAP associated domain containing 5##NM_001040285|PAPD5|64282|PAP associated domain containing 5##AK289949|HEATR3|55027|HEAT repeat containing 3##BC018730|HEATR3|55027|HEAT repeat containing 3##BC033077|HEATR3|55027|HEAT repeat containing 3##NM_182922|HEATR3|55027|HEAT repeat containing 3##AF462442|HEATR3|55027|HEAT repeat containing 3##AK000725|HEATR3|55027|HEAT repeat containing 3##BC014415|HEATR3|55027|HEAT repeat containing 3##AK093706|ADCY7|113|adenylate cyclase 7##BC039891|ADCY7|113|adenylate cyclase 7##NM_001114|ADCY7|113|adenylate cyclase 7##D25538|ADCY7|113|adenylate cyclase 7	0.992215	0.0	denovo_WM_7:13:0.917
chr17	46178923	46179012	reg1002067.p1	5.131	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-146	-	NM_006807 TSC_hg19_v1_chr17_-_46178605	-384	-	BX647976 TSC_hg19_v1_chr17_+_46126143	-52826	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	6018	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	6185	+	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	328571	-	U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##NM_006807|CBX1|10951|chromobox homolog 1##BX647976|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1	0.0	0.0	
chr4	48778113	48778251	reg1007799.p2	5.131	+	TSC_hg19_v1_chr4_+_48492278 BC136265 AY191416 NM_175619	-285901	+	TSC_hg19_v1_chr4_+_48485353 AK126542 NM_152679 BC019066 BC012048 DQ892628 EU176704 AY704414	-292755	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	-434569	+	TSC_hg19_v1_chr4_-_48782266 AL833444	4087	-	TSC_hg19_v1_chr4_-_48782286 BC040987 BC050336 NM_015030	4116	-	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	55069	+	BC136265|ZAR1|326340|zygote arrest 1##AY191416|ZAR1|326340|zygote arrest 1##NM_175619|ZAR1|326340|zygote arrest 1##AK126542|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##NM_152679|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##BC019066|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##BC012048|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##DQ892628|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##EU176704|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##AY704414|SLC10A4|201780|solute carrier family 10 (sodium/bile acid cotransporter family), member 4##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2##AL833444|FRYL|285527|FRY-like##BC040987|FRYL|285527|FRY-like##BC050336|FRYL|285527|FRY-like##NM_015030|FRYL|285527|FRY-like##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1	1.875598	0.0	denovo_WM_7:-4:0.422	denovo_WM_7:-5:0.473	denovo_WM_7:-91:0.334	denovo_WM_7:-92:0.325
chr14	77411896	77412006	reg1005099.p2	5.130	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-119156	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-132689	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-132741	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	82733	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	83109	-	AK124327 TSC_hg19_v1_chr14_-_77542533	130582	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.187186	0.0	
chr19	38396141	38396234	reg1007933.p1	5.130	+	TSC_hg19_v1_chr19_+_38308124 AK092337	-88048	+	TSC_hg19_v1_chr19_+_38307973 AK309685	-88178	+	BC064962 AK074539 NM_001172689 NM_001172690 NM_001172691 NM_001172692 NM_152360	-125973	-	AK302913 AY026504 AK128826 NM_031951	1087	-	TSC_hg19_v1_chr19_+_38397847 NM_015073	1670	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	1725	+	AK092337|LOC644554|644554|uncharacterized LOC644554##AK309685|LOC644554|644554|uncharacterized LOC644554##BC064962|ZNF573|126231|zinc finger protein 573##AK074539|ZNF573|126231|zinc finger protein 573##NM_001172689|ZNF573|126231|zinc finger protein 573##NM_001172690|ZNF573|126231|zinc finger protein 573##NM_001172691|ZNF573|126231|zinc finger protein 573##NM_001172692|ZNF573|126231|zinc finger protein 573##NM_152360|ZNF573|126231|zinc finger protein 573##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3	1.965993	0.0	denovo_WM_7:24:0.880	denovo_WM_7:-85:0.879
chr2	231375048	231375182	reg1012524.p1	5.130	+	AK091898 NM_001206704	-93645	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-94159	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-94196	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	202431	+	TSC_hg19_v1_chr2_+_231577633 BC020570	202529	+	AK292382 NM_001130849 NM_001130850 AK315692	203163	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	1.953945	0.0	denovo_WM_7:80:0.568	denovo_WM_7:81:0.343	denovo_WM_7:95:0.523	denovo_WM_7:96:0.404
chr12	123305302	123305482	reg1009652.p1	5.129	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	-46291	+	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	-68001	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	-90387	-	TSC_hg19_v1_chr12_+_123319294 AK090537	13910	+	TSC_hg19_v1_chr12_+_123320050 AK298387 BC067085 NM_003959 AB014555	14661	+	CU675175 TSC_hg19_v1_chr12_-_123380621	75223	-	NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK090537|HIP1R|9026|huntingtin interacting protein 1 related##AK298387|HIP1R|9026|huntingtin interacting protein 1 related##BC067085|HIP1R|9026|huntingtin interacting protein 1 related##NM_003959|HIP1R|9026|huntingtin interacting protein 1 related##AB014555|HIP1R|9026|huntingtin interacting protein 1 related	0.99502	0.0	
chr12	787606	787717	reg1006720.p3	5.129	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-14946	-	TSC_hg19_v1_chr12_-_752800 AK298043	-34842	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-35483	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	74495	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	75095	+	BC013629 TSC_hg19_v1_chr12_+_1017145	229421	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.994358	0.0	denovo_WM_7:-97:0.334
chr1	36263595	36263718	reg1010688.p2	5.129	+	TSC_hg19_v1_chr1_-_36235569 BC113116 BC115023 BC115024 BC115025 BC115026 BC115027 BC137279 BC140789 AF297866 NM_001190481 NM_022111 BC038991 BC018670 BC062215 AK308193	-28141	-	TSC_hg19_v1_chr1_-_36184816 AK096303 NM_152374	-78865	-	TSC_hg19_v1_chr1_-_36184424 BC026909 AK294352	-79244	-	TSC_hg19_v1_chr1_+_36273802 AB046787 BC152450 NM_017629	10164	+	TSC_hg19_v1_chr1_+_36348795 AF093097 NM_012199	85147	+	TSC_hg19_v1_chr1_+_36348815 BC063275	85158	+	BC113116|CLSPN|63967|claspin##BC115023|CLSPN|63967|claspin##BC115024|CLSPN|63967|claspin##BC115025|CLSPN|63967|claspin##BC115026|CLSPN|63967|claspin##BC115027|CLSPN|63967|claspin##BC137279|CLSPN|63967|claspin##BC140789|CLSPN|63967|claspin##AF297866|CLSPN|63967|claspin##NM_001190481|CLSPN|63967|claspin##NM_022111|CLSPN|63967|claspin##BC038991|CLSPN|63967|claspin##BC018670|CLSPN|63967|claspin##BC062215|CLSPN|63967|claspin##AK308193|CLSPN|63967|claspin##AK096303|C1orf216|127703|chromosome 1 open reading frame 216##NM_152374|C1orf216|127703|chromosome 1 open reading frame 216##BC026909|C1orf216|127703|chromosome 1 open reading frame 216##AK294352|C1orf216|127703|chromosome 1 open reading frame 216##AB046787|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##BC152450|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##NM_017629|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##AF093097|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##NM_012199|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##BC063275|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1	0.0	0.0	
chr17	57715289	57715458	reg1009730.p2	5.129	+	TSC_hg19_v1_chr17_+_57697403 AB587306	-17928	+	TSC_hg19_v1_chr17_+_57697289 AK127134 D21260	-18072	+	TSC_hg19_v1_chr17_+_57697282 BC051800	-18093	+	X55878 TSC_hg19_v1_chr17_+_57743577	28166	+	TSC_hg19_v1_chr17_-_57784773 BC006807 BC017457 AK057033 AF151905 NM_016077	69432	-	NM_030938 TSC_hg19_v1_chr17_+_57784931	69527	+	AK127134|CLTC|1213|clathrin, heavy chain (Hc)##D21260|CLTC|1213|clathrin, heavy chain (Hc)##BC051800|CLTC|1213|clathrin, heavy chain (Hc)##X55878|CLTC|1213|clathrin, heavy chain (Hc)##BC006807|PTRH2|51651|peptidyl-tRNA hydrolase 2##BC017457|PTRH2|51651|peptidyl-tRNA hydrolase 2##AK057033|PTRH2|51651|peptidyl-tRNA hydrolase 2##AF151905|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_016077|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_030938|VMP1|81671|vacuole membrane protein 1	0.14697	0.0	
chr18	39693565	39693745	reg1009868.p1	5.129	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-158422	+	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	-158456	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2313387	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1001914	-	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	1163774	-	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	2566459	+	BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK090603|LOC647946|647946|uncharacterized LOC647946##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1	0.0	0.0	
chr22	41335367	41335492	reg1009482.p2	5.129	+	AB528124 CU013018 CU013306 CR456468 BC112135 AF085232 NM_145174	-77366	-	TSC_hg19_v1_chr22_+_41253101 NM_001204827 NM_022098 AK301635 BX648018 BC037424 AL365514 BC005331 BC001681 BC004989 AX721172 AK313770 AL834310 CR456442 BC001208 BC023654 BC045166 BC053556 BC011632 AB527238 CR457396 CU013040 CU013328 CU674830	-82309	+	TSC_hg19_v1_chr22_-_41252691 NM_003932	-82739	-	TSC_hg19_v1_chr22_+_41347364 NM_014248	11919	+	TSC_hg19_v1_chr22_+_41347389 BC017370 CR456560 AK315722 AF140598 BC001466 AB590096 AF142059 CU013160 CU013448 CU674722 AF085906 AY099360	11977	+	TSC_hg19_v1_chr22_+_41487787 U01877	152361	+	CU013018|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CU013306|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##CR456468|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##BC112135|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##AF085232|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_145174|DNAJB7|150353|DnaJ (Hsp40) homolog, subfamily B, member 7##NM_001204827|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_022098|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK301635|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BX648018|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC037424|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL365514|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC005331|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001681|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC004989|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AK313770|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##AL834310|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR456442|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC001208|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC023654|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC045166|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC053556|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##BC011632|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##CR457396|XPNPEP3|63929|X-prolyl aminopeptidase (aminopeptidase P) 3, putative##NM_003932|ST13|6767|suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)##NM_014248|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC017370|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CR456560|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK315722|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF140598|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC001466|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF142059|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013160|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013448|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF085906|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AY099360|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##U01877|EP300|2033|E1A binding protein p300	0.768447	0.0	denovo_WM_7:-17:0.691
chr4	40632889	40633040	reg1010431.p2	5.129	+	AK304206 TSC_hg19_v1_chr4_-_40632775	-257	-	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	-1099	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-115006	-	BC042401 NM_024677 BC036568 AK024063	118982	+	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	226211	-	BC088372 TSC_hg19_v1_chr4_-_40936716	303714	-	AK304206|RBM47|54502|RNA binding motif protein 47##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2	0.0	0.0	
chr5	55376353	55376533	reg1001818.p2	5.129	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-85680	-	NM_001242636 NM_001242639	-227294	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-229174	+	AK123389 NM_024669	152742	-	NM_005921	734456	+	TSC_hg19_v1_chr5_+_56111375 AK307828	734921	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.0	
chr15	50736914	50737094	reg1009751.p2	5.128	+	TSC_hg19_v1_chr15_+_50716601 AK292400 BX537420 NM_001128610 NM_001128611 NM_005154 AK296480 BC038801 D29956 BC015545 BC110590 BC092443 BC026954 BC051345	-20383	+	TSC_hg19_v1_chr15_+_50647681 BX537481	-89333	+	NM_002041 NM_005254 NM_016654 NM_016655 NM_181427	-89400	-	NM_203494	101897	-	TSC_hg19_v1_chr15_-_50978746 BC128987 BC128988	241762	-	TSC_hg19_v1_chr15_-_50978923 AK000124	241935	-	AK292400|USP8|9101|ubiquitin specific peptidase 8##BX537420|USP8|9101|ubiquitin specific peptidase 8##NM_001128610|USP8|9101|ubiquitin specific peptidase 8##NM_001128611|USP8|9101|ubiquitin specific peptidase 8##NM_005154|USP8|9101|ubiquitin specific peptidase 8##AK296480|USP8|9101|ubiquitin specific peptidase 8##BC038801|USP8|9101|ubiquitin specific peptidase 8##D29956|USP8|9101|ubiquitin specific peptidase 8##BC015545|USP8|9101|ubiquitin specific peptidase 8##BC110590|USP8|9101|ubiquitin specific peptidase 8##BC092443|USP8|9101|ubiquitin specific peptidase 8##BC026954|USP8|9101|ubiquitin specific peptidase 8##BC051345|USP8|9101|ubiquitin specific peptidase 8##BX537481|LOC100129387|100129387|uncharacterized LOC100129387##NM_002041|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_005254|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016654|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016655|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_181427|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_203494|USP50|373509|ubiquitin specific peptidase 50##BC128987|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##BC128988|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK000124|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7	0.0	0.0	
chr19	5335931	5336111	reg1007858.p1	5.128	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-303122	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-366848	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-366897	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	4773	-	AK098722 NM_181710 AK292251 BC017592	119405	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	286737	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	0.990048	0.0	denovo_WM_7:12:0.287	denovo_WM_7:14:0.551
chr4	3081731	3081870	reg1008463.p1	5.128	+	L12392 TSC_hg19_v1_chr4_+_3076416 AB016794 NM_002111	-5473	+	TSC_hg19_v1_chr4_+_2965297 AK292390 AK223581 NM_001004056 NM_001004057 NM_182982 BC110825 BC027597 BC039732 BC117320 U33054 U33055 U33056 AK293569 X97879 X97880 X97881 X98118 HQ258463 X75897	-116265	+	TSC_hg19_v1_chr4_-_2965155 AK292939	-116606	-	AK126094 NM_001042690	168966	+	TSC_hg19_v1_chr4_+_3294763 AK310999 BC028154	212960	+	AF030111 NM_002926 NM_198229	234073	+	L12392|HTT|3064|huntingtin##AB016794|HTT|3064|huntingtin##NM_002111|HTT|3064|huntingtin##AK292390|GRK4|2868|G protein-coupled receptor kinase 4##AK223581|GRK4|2868|G protein-coupled receptor kinase 4##NM_001004056|GRK4|2868|G protein-coupled receptor kinase 4##NM_001004057|GRK4|2868|G protein-coupled receptor kinase 4##NM_182982|GRK4|2868|G protein-coupled receptor kinase 4##BC027597|GRK4|2868|G protein-coupled receptor kinase 4##BC117320|GRK4|2868|G protein-coupled receptor kinase 4##U33054|GRK4|2868|G protein-coupled receptor kinase 4##U33055|GRK4|2868|G protein-coupled receptor kinase 4##U33056|GRK4|2868|G protein-coupled receptor kinase 4##X97879|GRK4|2868|G protein-coupled receptor kinase 4##X97880|GRK4|2868|G protein-coupled receptor kinase 4##X97881|GRK4|2868|G protein-coupled receptor kinase 4##X98118|GRK4|2868|G protein-coupled receptor kinase 4##HQ258463|GRK4|2868|G protein-coupled receptor kinase 4##X75897|GRK4|2868|G protein-coupled receptor kinase 4##AK292939|NOP14|8602|NOP14 nucleolar protein homolog (yeast)##AK126094|C4orf44|345222|chromosome 4 open reading frame 44##NM_001042690|C4orf44|345222|chromosome 4 open reading frame 44##AK310999|RGS12|6002|regulator of G-protein signaling 12##BC028154|RGS12|6002|regulator of G-protein signaling 12##AF030111|RGS12|6002|regulator of G-protein signaling 12##NM_002926|RGS12|6002|regulator of G-protein signaling 12##NM_198229|RGS12|6002|regulator of G-protein signaling 12	0.980757	0.0	denovo_WM_7:30:0.778
chr2	166444253	166444365	reg1007690.p1	5.127	+	NM_024969 AK056655 TSC_hg19_v1_chr2_+_166428851	-15460	+	AK126129 NM_001172173 TSC_hg19_v1_chr2_+_166326207	-118125	+	NM_001040143	-292027	+	AK313389 TSC_hg19_v1_chr2_-_166650651	206296	-	BC056246 TSC_hg19_v1_chr2_-_166650713	206418	-	TSC_hg19_v1_chr2_-_166650773 NM_004482	206477	-	NM_024969|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##AK056655|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##AK126129|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##NM_001172173|CSRNP3|80034|cysteine-serine-rich nuclear protein 3##NM_001040143|SCN2A|6326|sodium channel, voltage-gated, type II, alpha subunit##AK313389|GALNT3|2591|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)##BC056246|GALNT3|2591|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)##NM_004482|GALNT3|2591|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)	0.0	0.0	
chr9	130559448	130559608	reg1008579.p2	5.127	+	TSC_hg19_v1_chr9_+_130548375 L25676 BC001968 AK313828 AB590139 DQ891182 DQ894364 DQ894365 AB451289 AB451421 BT019903	-11136	+	TSC_hg19_v1_chr9_+_130548326 X80230	-11193	+	NM_001261 TSC_hg19_v1_chr9_+_130548312	-11220	+	TSC_hg19_v1_chr9_+_130565171 NM_004957 AK315523 AK295309 BC064393 BC009901 BT006639 BC007121 M98045	5708	+	TSC_hg19_v1_chr9_+_130565522 NM_001018078 AY007210	5961	+	TSC_hg19_v1_chr9_+_130565577 AK056920	6057	+	L25676|CDK9|1025|cyclin-dependent kinase 9##BC001968|CDK9|1025|cyclin-dependent kinase 9##AK313828|CDK9|1025|cyclin-dependent kinase 9##DQ891182|CDK9|1025|cyclin-dependent kinase 9##DQ894364|CDK9|1025|cyclin-dependent kinase 9##DQ894365|CDK9|1025|cyclin-dependent kinase 9##AB451289|CDK9|1025|cyclin-dependent kinase 9##AB451421|CDK9|1025|cyclin-dependent kinase 9##BT019903|CDK9|1025|cyclin-dependent kinase 9##X80230|CDK9|1025|cyclin-dependent kinase 9##NM_001261|CDK9|1025|cyclin-dependent kinase 9##NM_004957|FPGS|2356|folylpolyglutamate synthase##AK315523|FPGS|2356|folylpolyglutamate synthase##AK295309|FPGS|2356|folylpolyglutamate synthase##BC064393|FPGS|2356|folylpolyglutamate synthase##BC009901|FPGS|2356|folylpolyglutamate synthase##BT006639|FPGS|2356|folylpolyglutamate synthase##BC007121|FPGS|2356|folylpolyglutamate synthase##M98045|FPGS|2356|folylpolyglutamate synthase##NM_001018078|FPGS|2356|folylpolyglutamate synthase##AY007210|FPGS|2356|folylpolyglutamate synthase##AK056920|FPGS|2356|folylpolyglutamate synthase	0.99897	0.0	denovo_WM_7:45:0.314	denovo_WM_7:46:0.314	denovo_WM_7:47:0.314
chr13	61010018	61010177	reg1010927.p1	5.126	+	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-38618	+	BX537910 NM_001146071 NM_030794	-39507	+	TSC_hg19_v1_chr13_-_60738096 NM_001042517	-271996	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	979156	-	AK289924 NM_022843	979557	-	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	6794407	-	EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537910|TDRD3|81550|tudor domain containing 3##NM_001146071|TDRD3|81550|tudor domain containing 3##NM_030794|TDRD3|81550|tudor domain containing 3##NM_001042517|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9	0.991494	0.0	denovo_WM_7:-38:0.685
chr15	89611739	89611878	reg1003897.p1	5.126	+	BC003610 AK095908 AK222735 AK223182 AK304627 AK310357 AK312640 U58516 AY141974 TSC_hg19_v1_chr15_-_89456611 NM_001114614 NM_005928	-155169	-	BT006948 EU832670 EU832749 CU678532 TSC_hg19_v1_chr15_-_89456571	-155248	-	AY358500 AY037161 TSC_hg19_v1_chr15_-_89438761 BC053689 AY262759 NM_178232 AK292055 BC062320 AK292103	-173010	-	NM_007011 NM_152924	19572	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	19840	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	19895	+	BC003610|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK095908|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK222735|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK223182|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK304627|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK310357|MFGE8|4240|milk fat globule-EGF factor 8 protein##AK312640|MFGE8|4240|milk fat globule-EGF factor 8 protein##U58516|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY141974|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_001114614|MFGE8|4240|milk fat globule-EGF factor 8 protein##NM_005928|MFGE8|4240|milk fat globule-EGF factor 8 protein##BT006948|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832670|MFGE8|4240|milk fat globule-EGF factor 8 protein##EU832749|MFGE8|4240|milk fat globule-EGF factor 8 protein##AY358500|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY037161|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC053689|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AY262759|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_178232|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292055|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##BC062320|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##AK292103|HAPLN3|145864|hyaluronan and proteoglycan link protein 3##NM_007011|ABHD2|11057|abhydrolase domain containing 2##NM_152924|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2	0.0	0.0	
chr18	46478863	46479043	reg1000358.p3	5.126	+	AF010193 NM_001190821 NM_005904	-1873	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-2186	-	AK301535 NM_001190822	-3251	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	508098	-	TSC_hg19_v1_chr18_-_47013575 AB097012	534612	-	TSC_hg19_v1_chr18_-_47013599 BC093004	534646	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.0	0.0	
chr5	10685311	10685449	reg1007507.p1	5.126	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-120938	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-243228	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-243377	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	75879	-	TSC_hg19_v1_chr5_-_10761341 BC002726	75962	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	76019	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.0	0.0	
chr12	47165856	47166010	reg1011170.p1	5.125	+	TSC_hg19_v1_chr12_-_46766619 NM_018976	-399330	-	TSC_hg19_v1_chr12_-_46766555 AK291644 BC040342 AK001700 AJ344099 AF298897	-399644	-	NM_001077484 NM_030674	-502726	-	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	53823	-	TSC_hg19_v1_chr12_+_47473404 BC072670	307464	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	307650	-	NM_018976|SLC38A2|54407|solute carrier family 38, member 2##AK291644|SLC38A2|54407|solute carrier family 38, member 2##BC040342|SLC38A2|54407|solute carrier family 38, member 2##AK001700|SLC38A2|54407|solute carrier family 38, member 2##AJ344099|SLC38A2|54407|solute carrier family 38, member 2##AF298897|SLC38A2|54407|solute carrier family 38, member 2##NM_001077484|SLC38A1|81539|solute carrier family 38, member 1##NM_030674|SLC38A1|81539|solute carrier family 38, member 1##AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2	0.99941	0.0	denovo_WM_7:-8:0.739
chr16	86052089	86052253	reg1008527.p1	5.125	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-119385	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-218836	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-218866	+	TSC_hg19_v1_chr16_-_86542463 AK091834	490293	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	491985	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	492069	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.969474	0.0	denovo_WM_7:-52:0.411	denovo_WM_7:-53:0.411
chr20	8189803	8189947	reg1006093.p1	5.125	+	TSC_hg19_v1_chr20_+_8112912 AB011153 AK310597 BC117231 AX721082 AJ278313 AJ278314 BC069420 NM_015192 NM_182734 AB463171 HQ258537	-76845	+	TSC_hg19_v1_chr20_-_8000461 AK075404 BC044777	-189403	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	-189468	-	TSC_hg19_v1_chr20_+_9049689 AK307837 NM_001172646	859808	+	AK307482 TSC_hg19_v1_chr20_+_9049806	859923	+	NM_182797 BC117458 BC143868	1008183	+	AB011153|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AK310597|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##BC117231|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AJ278313|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AJ278314|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##BC069420|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##NM_015192|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##NM_182734|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##HQ258537|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AK075404|TMX4|56255|thioredoxin-related transmembrane protein 4##BC044777|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4##AK307837|PLCB4|5332|phospholipase C, beta 4##NM_001172646|PLCB4|5332|phospholipase C, beta 4##AK307482|PLCB4|5332|phospholipase C, beta 4##NM_182797|PLCB4|5332|phospholipase C, beta 4##BC117458|PLCB4|5332|phospholipase C, beta 4##BC143868|PLCB4|5332|phospholipase C, beta 4	0.979362	0.0	denovo_WM_7:-24:0.740
chr2	97430758	97430915	reg1007566.p2	5.125	+	TSC_hg19_v1_chr2_+_97426638 BC063295 NM_020184 AF202777 AB046812	-4087	+	AK304515 AK075347 AK295463 AK299740 AK301077 AK308085 AK316331 AL136617 TSC_hg19_v1_chr2_-_97405802 AK312249 NM_001142292 NM_030805 AK310100	-25023	-	BC000347 BC005822 BC005862 AB528167 AJ549957 AM392707 EU831637 EU831721 TSC_hg19_v1_chr2_-_97405791 BC067265 AY358929 AK222828 BX648002	-25053	-	AK293915 TSC_hg19_v1_chr2_+_97454352	23501	+	TSC_hg19_v1_chr2_+_97482006 BC037272 AK126847 NM_017623 NM_199078 BC007199 AF216965 AK000025 CU675553	51646	+	AF492401 AY196212 BC107056 AK057011 AK092564 AX747600 NM_144994	78909	-	BC063295|CNNM4|26504|cyclin M4##NM_020184|CNNM4|26504|cyclin M4##AF202777|CNNM4|26504|cyclin M4##AB046812|CNNM4|26504|cyclin M4##AK304515|LMAN2L|81562|lectin, mannose-binding 2-like##AK075347|LMAN2L|81562|lectin, mannose-binding 2-like##AK295463|LMAN2L|81562|lectin, mannose-binding 2-like##AK299740|LMAN2L|81562|lectin, mannose-binding 2-like##AK301077|LMAN2L|81562|lectin, mannose-binding 2-like##AK308085|LMAN2L|81562|lectin, mannose-binding 2-like##AK316331|LMAN2L|81562|lectin, mannose-binding 2-like##AL136617|LMAN2L|81562|lectin, mannose-binding 2-like##AK312249|LMAN2L|81562|lectin, mannose-binding 2-like##NM_001142292|LMAN2L|81562|lectin, mannose-binding 2-like##NM_030805|LMAN2L|81562|lectin, mannose-binding 2-like##AK310100|LMAN2L|81562|lectin, mannose-binding 2-like##BC000347|LMAN2L|81562|lectin, mannose-binding 2-like##BC005822|LMAN2L|81562|lectin, mannose-binding 2-like##BC005862|LMAN2L|81562|lectin, mannose-binding 2-like##AJ549957|LMAN2L|81562|lectin, mannose-binding 2-like##AM392707|LMAN2L|81562|lectin, mannose-binding 2-like##EU831637|LMAN2L|81562|lectin, mannose-binding 2-like##EU831721|LMAN2L|81562|lectin, mannose-binding 2-like##BC067265|LMAN2L|81562|lectin, mannose-binding 2-like##AY358929|LMAN2L|81562|lectin, mannose-binding 2-like##AK222828|LMAN2L|81562|lectin, mannose-binding 2-like##BX648002|LMAN2L|81562|lectin, mannose-binding 2-like##AK293915|CNNM4|26504|cyclin M4##BC037272|CNNM3|26505|cyclin M3##AK126847|CNNM3|26505|cyclin M3##NM_017623|CNNM3|26505|cyclin M3##NM_199078|CNNM3|26505|cyclin M3##BC007199|CNNM3|26505|cyclin M3##AF216965|CNNM3|26505|cyclin M3##AK000025|CNNM3|26505|cyclin M3##AF492401|ANKRD23|200539|ankyrin repeat domain 23##AY196212|ANKRD23|200539|ankyrin repeat domain 23##BC107056|ANKRD23|200539|ankyrin repeat domain 23##AK057011|ANKRD23|200539|ankyrin repeat domain 23##AK092564|ANKRD23|200539|ankyrin repeat domain 23##NM_144994|ANKRD23|200539|ankyrin repeat domain 23	3.315128	0.0	denovo_WM_7:37:0.981	denovo_WM_7:-39:0.272
chr19	39041524	39041704	reg1008003.p1	5.124	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-117270	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-124742	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-147713	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	66974	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	68099	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	68202	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	1.996013	0.0	
chr5	77657001	77657168	reg1010411.p1	5.124	+	NM_004866 TSC_hg19_v1_chr5_+_77656440 AF038966 AK304452 AK225172 BC009787 BC015065 AK298146 BC034048 AK290225 CR542286 CU677209	-668	+	TSC_hg19_v1_chr5_-_77656217 AK129849	-869	-	BC039455 TSC_hg19_v1_chr5_-_77656182	-903	-	D86961 BC136335 BC136336 AY309920 TSC_hg19_v1_chr5_-_77806179	148970	-	TSC_hg19_v1_chr5_-_77806191 AK125227	149112	-	CR936660 TSC_hg19_v1_chr5_-_77845052	187939	-	NM_004866|SCAMP1|9522|secretory carrier membrane protein 1##AF038966|SCAMP1|9522|secretory carrier membrane protein 1##AK304452|SCAMP1|9522|secretory carrier membrane protein 1##AK225172|SCAMP1|9522|secretory carrier membrane protein 1##BC009787|SCAMP1|9522|secretory carrier membrane protein 1##BC015065|SCAMP1|9522|secretory carrier membrane protein 1##AK298146|SCAMP1|9522|secretory carrier membrane protein 1##BC034048|SCAMP1|9522|secretory carrier membrane protein 1##AK290225|SCAMP1|9522|secretory carrier membrane protein 1##CR542286|SCAMP1|9522|secretory carrier membrane protein 1##AK129849|LOC728769|728769|uncharacterized LOC728769##D86961|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##BC136335|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##BC136336|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AY309920|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2	0.637549	0.0	denovo_WM_7:-3:0.240
chr6_mann_hap4	2513308	2513443	reg1007324.p1	5.124	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.994615	0.0	
chr12	42692934	42693114	reg1004166.p1	5.123	+	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-60853	-	CU691510 EU446625 EU446756 AB527838 TSC_hg19_v1_chr12_-_42632024 BC037777 AK127531 AK291355 AK296191 AK294260 NM_001190977	-60989	-	TSC_hg19_v1_chr12_-_42538503 AK125141 NM_001099650 NM_173601 BC030023	-154445	-	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	26851	-	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	26954	+	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	184392	-	NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##EU446625|YAF2|10138|YY1 associated factor 2##EU446756|YAF2|10138|YY1 associated factor 2##BC037777|YAF2|10138|YY1 associated factor 2##AK127531|YAF2|10138|YY1 associated factor 2##AK291355|YAF2|10138|YY1 associated factor 2##AK296191|YAF2|10138|YY1 associated factor 2##AK294260|YAF2|10138|YY1 associated factor 2##NM_001190977|YAF2|10138|YY1 associated factor 2##AK125141|GXYLT1|283464|glucoside xylosyltransferase 1##NM_001099650|GXYLT1|283464|glucoside xylosyltransferase 1##NM_173601|GXYLT1|283464|glucoside xylosyltransferase 1##BC030023|GXYLT1|283464|glucoside xylosyltransferase 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)	1.655195	0.0	denovo_WM_7:-5:0.565	denovo_WM_7:-20:0.636
chr12	93643453	93643614	reg1009771.p1	5.123	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-320435	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-320490	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	-320595	-	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	128359	+	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	192153	-	TSC_hg19_v1_chr12_-_93835718 D83004	192185	-	NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.298953	0.0	denovo_WM_7:38:0.275
chr12	94241587	94241767	reg1000243.p2	5.123	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-170494	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-276076	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-276857	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	300827	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	611854	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	611965	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	0.0	0.0	
chr14	20880753	20880853	reg1009391.p1	5.122	+	TSC_hg19_v1_chr14_+_20811793 AK290079 AK300971 AK001980 AJ236912	-69007	+	TSC_hg19_v1_chr14_+_20811783 NM_001042618 NM_005484	-69056	+	TSC_hg19_v1_chr14_-_20801439 AK026233 AK225451 AK309183 AK225253 AK226037 AL161994 NM_021178 NM_182849	-79359	-	BC143812 BC126107 BC143815 NM_007110 U86136 TSC_hg19_v1_chr14_-_20881589	780	-	NM_001109997	22997	-	AJ271669 CR457232 AB463988 DQ894806 EU176277 AF052137 AB050442 TSC_hg19_v1_chr14_-_20922951	42098	-	AK290079|PARP2|10038|poly (ADP-ribose) polymerase 2##AK300971|PARP2|10038|poly (ADP-ribose) polymerase 2##AK001980|PARP2|10038|poly (ADP-ribose) polymerase 2##AJ236912|PARP2|10038|poly (ADP-ribose) polymerase 2##NM_001042618|PARP2|10038|poly (ADP-ribose) polymerase 2##NM_005484|PARP2|10038|poly (ADP-ribose) polymerase 2##AK026233|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225451|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK309183|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225253|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK226037|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AL161994|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_021178|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182849|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC143812|TEP1|7011|telomerase-associated protein 1##BC126107|TEP1|7011|telomerase-associated protein 1##BC143815|TEP1|7011|telomerase-associated protein 1##NM_007110|TEP1|7011|telomerase-associated protein 1##U86136|TEP1|7011|telomerase-associated protein 1##NM_001109997|KLHL33|123103|kelch-like 33 (Drosophila)##AJ271669|OSGEP|55644|O-sialoglycoprotein endopeptidase##CR457232|OSGEP|55644|O-sialoglycoprotein endopeptidase##DQ894806|OSGEP|55644|O-sialoglycoprotein endopeptidase##EU176277|OSGEP|55644|O-sialoglycoprotein endopeptidase##AF052137|OSGEP|55644|O-sialoglycoprotein endopeptidase##AB050442|OSGEP|55644|O-sialoglycoprotein endopeptidase	0.998749	0.0	
chr1	67616806	67616932	reg1009655.p2	5.122	+	NM_001013674	-22650	-	TSC_hg19_v1_chr1_-_67520070 AK289800 NM_015139	-96816	-	AB385301 BC093786 BC112031 AB044343 TSC_hg19_v1_chr1_-_67519828 D87449	-97093	-	AF461422 NM_144701	15299	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	156212	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	156694	+	NM_001013674|C1orf141|400757|chromosome 1 open reading frame 141##AK289800|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##NM_015139|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##BC093786|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##BC112031|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##AB044343|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##D87449|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2	0.0	0.0	
chr20	48687887	48688039	reg1007106.p2	5.122	+	TSC_hg19_v1_chr20_+_48599515 NM_005985 AK313228 BC012910 AF125377 DQ891599 DQ894793 AB464226 AF131208 CU680444	-88410	+	BX640603 TSC_hg19_v1_chr20_+_48552935 BC066919 AF265215 AK301731 BC013695 AB587558 BT006795	-135020	+	TSC_hg19_v1_chr20_+_48552933 AK315638	-135032	+	BT007382 CU674232 HQ448675 TSC_hg19_v1_chr20_-_48729684 BC000468 BX647511 BX648147 NM_001032288	41727	-	TSC_hg19_v1_chr20_-_48732483 AK314754 NM_022442 BC005215 NM_021988 NM_199144	44525	-	TSC_hg19_v1_chr20_-_48770209 BC140089 BC143091 AB587452	82227	-	NM_005985|SNAI1|6615|snail homolog 1 (Drosophila)##AK313228|SNAI1|6615|snail homolog 1 (Drosophila)##BC012910|SNAI1|6615|snail homolog 1 (Drosophila)##AF125377|SNAI1|6615|snail homolog 1 (Drosophila)##DQ891599|SNAI1|6615|snail homolog 1 (Drosophila)##DQ894793|SNAI1|6615|snail homolog 1 (Drosophila)##AF131208|SNAI1|6615|snail homolog 1 (Drosophila)##BX640603|RNF114|55905|ring finger protein 114##BC066919|RNF114|55905|ring finger protein 114##AF265215|RNF114|55905|ring finger protein 114##AK301731|RNF114|55905|ring finger protein 114##BC013695|RNF114|55905|ring finger protein 114##BT006795|RNF114|55905|ring finger protein 114##AK315638|RNF114|55905|ring finger protein 114##BT007382|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##HQ448675|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC000468|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX647511|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX648147|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_001032288|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##AK314754|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_022442|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC005215|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_021988|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_199144|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC140089|TMEM189|387521|transmembrane protein 189##BC143091|TMEM189|387521|transmembrane protein 189	0.0	0.999745	CTCF.p2:23:1.000
chr7	69064537	69064633	reg1009016.p2	5.122	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-256	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-749	+	TSC_hg19_v1_chr7_+_66767656 BC026058	-2296928	+	TSC_hg19_v1_chr7_+_69064580 BC011643	3	+	TSC_hg19_v1_chr7_+_70231164 AK296981	1166620	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1533203	+	AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##BC026058|STAG3L4|64940|stromal antigen 3-like 4##BC011643|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17	0.0	0.0	
chr2	102409930	102410031	reg1007746.p1	5.121	+	TSC_hg19_v1_chr2_+_102314168 NM_001242560 NM_004834 NM_145686 BC064691 AK296396 AF096300 NM_001242559 NM_145687 AB384511 AY212247 AY834276	-95628	+	AK131289 AK298610 NM_001145664 TSC_hg19_v1_chr2_-_102091212	-318787	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	-405991	-	TSC_hg19_v1_chr2_+_102508334 BC045694	98362	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	98552	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	198383	+	NM_001242560|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_004834|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145686|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC064691|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK296396|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AF096300|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_001242559|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##NM_145687|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY212247|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AY834276|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##AK131289|RFX8|731220|regulatory factor X, 8##AK298610|RFX8|731220|regulatory factor X, 8##NM_001145664|RFX8|731220|regulatory factor X, 8##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II	0.997912	0.0	
chr21	47604400	47604551	reg1009705.p1	5.121	+	TSC_hg19_v1_chr21_-_47604362 AK309847 AK304535 NM_001142854 NM_032261	-100	-	TSC_hg19_v1_chr21_-_47604340 BC084577	-129	-	AL136871 TSC_hg19_v1_chr21_-_47604330	-159	-	X87809 TSC_hg19_v1_chr21_-_47648594	44030	-	TSC_hg19_v1_chr21_-_47648618 AK226141 CU690148 DQ891234 DQ894418	44167	-	TSC_hg19_v1_chr21_-_47648679 D63807 S81221 BC035638	44202	-	AK309847|C21orf56|84221|chromosome 21 open reading frame 56##AK304535|C21orf56|84221|chromosome 21 open reading frame 56##NM_001142854|C21orf56|84221|chromosome 21 open reading frame 56##NM_032261|C21orf56|84221|chromosome 21 open reading frame 56##BC084577|C21orf56|84221|chromosome 21 open reading frame 56##AL136871|C21orf56|84221|chromosome 21 open reading frame 56##X87809|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK226141|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##DQ891234|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##DQ894418|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##D63807|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##S81221|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##BC035638|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)	0.0	0.0	
chr3	100122236	100122376	reg1010265.p2	5.121	+	BC052994 BC065555 NM_014820 AK302796	-2053	-	BC040562 NM_001085451	-2270	+	AB018262 BC003633 TSC_hg19_v1_chr3_-_100119948	-2378	-	TSC_hg19_v1_chr3_+_100211440 AK000996 AY450392 NM_018004	89147	+	TSC_hg19_v1_chr3_+_100211558 AK129789	89277	+	BC040355 TSC_hg19_v1_chr3_+_100238088	115769	+	BC052994|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC065555|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##NM_014820|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AK302796|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC040562|LNP1|348801|leukemia NUP98 fusion partner 1##NM_001085451|LNP1|348801|leukemia NUP98 fusion partner 1##AB018262|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC003633|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AK000996|TMEM45A|55076|transmembrane protein 45A##AY450392|TMEM45A|55076|transmembrane protein 45A##NM_018004|TMEM45A|55076|transmembrane protein 45A##AK129789|TMEM45A|55076|transmembrane protein 45A##BC040355|TMEM45A|55076|transmembrane protein 45A	0.998988	0.0	denovo_WM_7:12:0.794
chr5	150827024	150827148	reg1011140.p1	5.121	+	BC101100 BC101101 BC101102 BC101103 AK297682 AY162214 AK122630 AK309575 NM_181776	-99967	-	AK127978 NM_001145017 NM_181774	-143757	-	NM_000405 NM_001167607 TSC_hg19_v1_chr5_+_150632745 AK225978 L01439 M76477 AK312494 X62078 AK298867 BC009273 X61095 CU679281 DQ891914 DQ895098 X16087	-194371	+	TSC_hg19_v1_chr5_+_150827163 NM_078483 BX537963 AY227111	74	+	AK309323 TSC_hg19_v1_chr5_+_150827187	103	+	TSC_hg19_v1_chr5_+_150827239 AY162213 BC136437 BC136438	158	+	BC101100|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101101|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101102|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101103|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK297682|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AY162214|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK309575|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##NM_181776|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK127978|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_001145017|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_181774|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_000405|GM2A|2760|GM2 ganglioside activator##NM_001167607|GM2A|2760|GM2 ganglioside activator##L01439|GM2A|2760|GM2 ganglioside activator##M76477|GM2A|2760|GM2 ganglioside activator##AK312494|GM2A|2760|GM2 ganglioside activator##X62078|GM2A|2760|GM2 ganglioside activator##AK298867|GM2A|2760|GM2 ganglioside activator##BC009273|GM2A|2760|GM2 ganglioside activator##X61095|GM2A|2760|GM2 ganglioside activator##DQ891914|GM2A|2760|GM2 ganglioside activator##DQ895098|GM2A|2760|GM2 ganglioside activator##X16087|GM2A|2760|GM2 ganglioside activator##NM_078483|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BX537963|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AY227111|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AK309323|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AY162213|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BC136437|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BC136438|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1	0.0	0.087665	
chr5	158383632	158383763	reg1007126.p1	5.121	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1097607	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1199317	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1212957	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	142760	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	143045	-	AK304228 NM_001199382	250951	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	1.385174	0.0	denovo_WM_7:-52:0.361
chr8	141523948	141524070	reg1009217.p2	5.120	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-2446	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-2617	+	AK128755 NM_031466	-55332	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	121615	-	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	487247	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	614728	+	AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3	1.863522	0.0	denovo_WM_7:6:0.873	denovo_WM_7:21:0.882
chr10	112326994	112327174	reg1010763.p1	5.119	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	-69333	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-262384	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-262491	-	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	408	+	AF067163 TSC_hg19_v1_chr10_+_112344155	17031	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	77045	+	NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20	0.0	0.0	
chr1	235061842	235061929	reg1006287.p1	5.119	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-166111	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-316639	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-318027	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	230204	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	230346	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	262678	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.988983	0.0	denovo_WM_7:26:0.683
chr13	21328288	21328369	reg1007714.p1	5.119	+	TSC_hg19_v1_chr13_-_21295740 L23206	-32517	-	AY078238 BC036243 NM_138284 AF458062	-50816	+	TSC_hg19_v1_chr13_+_21183940 BC039413	-144351	+	DQ823637 BC018091 NM_174928 TSC_hg19_v1_chr13_-_21348079	19738	-	TSC_hg19_v1_chr13_-_21348081 AK055408 AK316604	19759	-	BC050680 AB051508 AB384273 AK057924 BC098402 TSC_hg19_v1_chr13_-_21476886 AK302760	148542	-	AY078238|IL17D|53342|interleukin 17D##BC036243|IL17D|53342|interleukin 17D##NM_138284|IL17D|53342|interleukin 17D##AF458062|IL17D|53342|interleukin 17D##DQ823637|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC018091|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##NM_174928|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##AK316604|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC050680|XPO4|64328|exportin 4##AB051508|XPO4|64328|exportin 4##AK057924|XPO4|64328|exportin 4##BC098402|XPO4|64328|exportin 4##AK302760|XPO4|64328|exportin 4	0.985078	0.0	
chr22	37733754	37733934	reg1011181.p1	5.119	+	BC033693 BC041161 AK024428 TSC_hg19_v1_chr22_+_37678584 CR456551 AK315052	-55268	+	TSC_hg19_v1_chr22_+_37678548 AK304453 BC017780	-55307	+	AF125349 AF075458 NM_013385 TSC_hg19_v1_chr22_+_37678513	-55376	+	TSC_hg19_v1_chr22_-_37823515 NM_052906	89684	-	AB463116 CU013118 CU013406 CR456518 U94352 AK297833 TSC_hg19_v1_chr22_-_37882426 AK292123 AK297149 AK316555 NM_001166343 BC094814 NM_002405	148501	-	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	181463	-	BC033693|CYTH4|27128|cytohesin 4##BC041161|CYTH4|27128|cytohesin 4##AK024428|CYTH4|27128|cytohesin 4##CR456551|CYTH4|27128|cytohesin 4##AK315052|CYTH4|27128|cytohesin 4##AK304453|CYTH4|27128|cytohesin 4##BC017780|CYTH4|27128|cytohesin 4##AF125349|CYTH4|27128|cytohesin 4##AF075458|CYTH4|27128|cytohesin 4##NM_013385|CYTH4|27128|cytohesin 4##NM_052906|ELFN2|114794|extracellular leucine-rich repeat and fibronectin type III domain containing 2##CU013118|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##CU013406|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##CR456518|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##U94352|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##AK297833|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##AK292123|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##AK297149|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##AK316555|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001166343|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC094814|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_002405|MFNG|4242|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10	0.992688	0.0	
chr5	1634543	1634723	reg1008344.p1	5.119	+	TSC_hg19_v1_chr5_-_1634100 BC019918 BC045555 AK311210 AK311251	-515	-	TSC_hg19_v1_chr5_-_1634097 BC020552 BC053586 BC044220 AK308990 AK315872 BC067863 BC014604 AK307076	-564	-	TSC_hg19_v1_chr5_-_1594617 BC150558	-40002	-	TSC_hg19_v1_chr5_-_1799926 AB049654 AF151109 AF155653 BC020642	165290	-	TSC_hg19_v1_chr5_-_1799952 AK312001 BC104652 EF036487 NM_032479	165339	-	TSC_hg19_v1_chr5_+_1801520 NM_004553 AK022503 BC038664 AF044959 BC046155 CR456880 HQ257915	166879	+	BC019918|LOC728613|728613|programmed cell death 6 pseudogene##BC045555|LOC728613|728613|programmed cell death 6 pseudogene##AK311210|LOC728613|728613|programmed cell death 6 pseudogene##BC020552|LOC728613|728613|programmed cell death 6 pseudogene##BC053586|LOC728613|728613|programmed cell death 6 pseudogene##BC044220|LOC728613|728613|programmed cell death 6 pseudogene##AK308990|LOC728613|728613|programmed cell death 6 pseudogene##BC067863|LOC728613|728613|programmed cell death 6 pseudogene##BC014604|LOC728613|728613|programmed cell death 6 pseudogene##AK307076|LOC728613|728613|programmed cell death 6 pseudogene##BC150558|SDHAP3|728609|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3##AB049654|MRPL36|64979|mitochondrial ribosomal protein L36##AF151109|MRPL36|64979|mitochondrial ribosomal protein L36##AF155653|MRPL36|64979|mitochondrial ribosomal protein L36##BC020642|MRPL36|64979|mitochondrial ribosomal protein L36##AK312001|MRPL36|64979|mitochondrial ribosomal protein L36##BC104652|MRPL36|64979|mitochondrial ribosomal protein L36##EF036487|MRPL36|64979|mitochondrial ribosomal protein L36##NM_032479|MRPL36|64979|mitochondrial ribosomal protein L36##NM_004553|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##AK022503|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##BC038664|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##AF044959|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##BC046155|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##CR456880|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##HQ257915|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)	1.800702	0.0	denovo_WM_7:3:0.552	denovo_WM_7:18:0.581
chr5	33676510	33676685	reg1006675.p2	5.119	+	TSC_hg19_v1_chr5_+_33441070 AK095852 AK293620 AK311361 AK315713 AK296783 M63180 BC010578 AK308342 BC000517 BC088355 AK222804 AB384811 CU674250 EU831444 DQ891416 DQ894590	-235458	+	AK292346 TSC_hg19_v1_chr5_+_33440874 NM_152295	-235741	+	BC131540 X52282 TSC_hg19_v1_chr5_+_32711843 AF025998	-964792	+	BC139900 BC131733 AY358745 TSC_hg19_v1_chr5_-_33892090 BC058841 NM_030955	215448	-	TSC_hg19_v1_chr5_-_33892294 AJ250725	215698	-	D88437 NM_016568	259893	+	AK095852|TARS|6897|threonyl-tRNA synthetase##AK293620|TARS|6897|threonyl-tRNA synthetase##AK311361|TARS|6897|threonyl-tRNA synthetase##AK315713|TARS|6897|threonyl-tRNA synthetase##AK296783|TARS|6897|threonyl-tRNA synthetase##M63180|TARS|6897|threonyl-tRNA synthetase##BC010578|TARS|6897|threonyl-tRNA synthetase##AK308342|TARS|6897|threonyl-tRNA synthetase##BC000517|TARS|6897|threonyl-tRNA synthetase##BC088355|TARS|6897|threonyl-tRNA synthetase##AK222804|TARS|6897|threonyl-tRNA synthetase##EU831444|TARS|6897|threonyl-tRNA synthetase##DQ891416|TARS|6897|threonyl-tRNA synthetase##DQ894590|TARS|6897|threonyl-tRNA synthetase##AK292346|TARS|6897|threonyl-tRNA synthetase##NM_152295|TARS|6897|threonyl-tRNA synthetase##BC131540|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##X52282|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AF025998|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##BC139900|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC131733|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AY358745|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC058841|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##NM_030955|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AJ250725|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##D88437|RXFP3|51289|relaxin/insulin-like family peptide receptor 3##NM_016568|RXFP3|51289|relaxin/insulin-like family peptide receptor 3	0.048014	0.0	
chr8	9170635	9170815	reg1003540.p2	5.119	+	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	-161625	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	-162547	-	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-310220	+	TSC_hg19_v1_chr8_+_9413421 BC098394	242680	+	TSC_hg19_v1_chr8_+_9413423 AK302031	242698	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	242756	+	AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.997342	0.0	
chr18	38515505	38515610	reg1010214.p1	5.118	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-1135289	-	TSC_hg19_v1_chr18_-_36915657 D28405	-1599901	-	NM_001025087 NM_001025088 NM_001025089 NM_020180	-3369558	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	1019642	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	1019676	+	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	2180012	-	AK090603|LOC647946|647946|uncharacterized LOC647946##NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2	0.010182	0.185912	
chr12	123131502	123131682	reg1010424.p1	5.117	+	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-119788	+	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	-120084	-	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	-146074	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	56280	-	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	69786	-	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	83413	-	AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1	0.0	0.0	
chr12	48545927	48546055	reg1011136.p1	5.117	+	D21861 NM_001166687 NM_001166688 Y00698 BC000534 BC012799 BC013298 AB463168 CU674264 CU676868 BC007798	-29496	+	NM_000289 D21862 TSC_hg19_v1_chr12_+_48513146 M26066 U24183 AK312284 BC021203	-32905	+	TSC_hg19_v1_chr12_-_48499846 AK292060 AK312874	-46026	-	TSC_hg19_v1_chr12_-_48551274 AF464877 AK024908 BC001321 AK297013 AK289957 NM_024095	5331	-	NM_001013635 AK056003 BC036801 TSC_hg19_v1_chr12_+_48577419 BC049387	31414	+	TSC_hg19_v1_chr12_+_48592139 AK125945 CR749551	46163	+	D21861|PFKM|5213|phosphofructokinase, muscle##NM_001166687|PFKM|5213|phosphofructokinase, muscle##NM_001166688|PFKM|5213|phosphofructokinase, muscle##Y00698|PFKM|5213|phosphofructokinase, muscle##BC000534|PFKM|5213|phosphofructokinase, muscle##BC012799|PFKM|5213|phosphofructokinase, muscle##BC013298|PFKM|5213|phosphofructokinase, muscle##BC007798|PFKM|5213|phosphofructokinase, muscle##NM_000289|PFKM|5213|phosphofructokinase, muscle##M26066|PFKM|5213|phosphofructokinase, muscle##U24183|PFKM|5213|phosphofructokinase, muscle##AK312284|PFKM|5213|phosphofructokinase, muscle##BC021203|PFKM|5213|phosphofructokinase, muscle##AK292060|SENP1|29843|SUMO1/sentrin specific peptidase 1##AK312874|SENP1|29843|SUMO1/sentrin specific peptidase 1##AF464877|ASB8|140461|ankyrin repeat and SOCS box containing 8##AK024908|ASB8|140461|ankyrin repeat and SOCS box containing 8##BC001321|ASB8|140461|ankyrin repeat and SOCS box containing 8##AK297013|ASB8|140461|ankyrin repeat and SOCS box containing 8##AK289957|ASB8|140461|ankyrin repeat and SOCS box containing 8##NM_024095|ASB8|140461|ankyrin repeat and SOCS box containing 8##NM_001013635|C12orf68|387856|chromosome 12 open reading frame 68##AK056003|C12orf68|387856|chromosome 12 open reading frame 68##BC036801|C12orf68|387856|chromosome 12 open reading frame 68##BC049387|C12orf68|387856|chromosome 12 open reading frame 68##AK125945|DKFZP779L1853|643162|uncharacterized LOC643162##CR749551|DKFZP779L1853|643162|uncharacterized LOC643162	0.998451	0.0	denovo_WM_7:-48:0.494	denovo_WM_7:-49:0.494
chr19	6518264	6518444	reg1008351.p4	5.117	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-16037	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-36571	-	NM_139161 NM_174881 AK292956 AF503290 AY358684 BC018409 AK000653	-54070	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	12672	+	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	72678	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	72752	-	EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##NM_139161|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_174881|CRB3|92359|crumbs homolog 3 (Drosophila)##AK292956|CRB3|92359|crumbs homolog 3 (Drosophila)##AF503290|CRB3|92359|crumbs homolog 3 (Drosophila)##AY358684|CRB3|92359|crumbs homolog 3 (Drosophila)##BC018409|CRB3|92359|crumbs homolog 3 (Drosophila)##AK000653|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule	0.117914	0.139833	
chr6	111049746	111049881	reg1009298.p1	5.117	+	TSC_hg19_v1_chr6_-_110797837 BC047565 NM_033125	-251950	-	TSC_hg19_v1_chr6_-_110797817 AK304546	-251995	-	BC012014 AF268892 AY145502 BC037247 TSC_hg19_v1_chr6_-_110797794	-252025	-	AK304351 TSC_hg19_v1_chr6_+_111135843	86020	+	BC047513 TSC_hg19_v1_chr6_-_111136246	86405	-	AJ420571 TSC_hg19_v1_chr6_-_111136300	86486	-	BC047565|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##NM_033125|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304546|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC012014|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AF268892|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AY145502|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##BC037247|SLC22A16|85413|solute carrier family 22 (organic cation/carnitine transporter), member 16##AK304351|AMD1|262|adenosylmethionine decarboxylase 1##BC047513|CDK19|23097|cyclin-dependent kinase 19##AJ420571|CDK19|23097|cyclin-dependent kinase 19	0.991058	0.0	denovo_WM_7:-31:0.787
chr10	125608689	125608868	reg1006873.p1	5.116	+	AJ505757 NM_153442 BC112011 BC113462	-182901	+	TSC_hg19_v1_chr10_+_124914364 AB463452 AB590162 CU692616 DQ891852 DQ895042	-694422	+	TSC_hg19_v1_chr10_+_124913926 AF081496 AF047472 AF047473 BC005138 BC022438 AF053304	-694832	+	BC137492 BC146862 AY358565 NM_198148	42718	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	243121	-	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	244375	-	AJ505757|GPR26|2849|G protein-coupled receptor 26##NM_153442|GPR26|2849|G protein-coupled receptor 26##BC112011|GPR26|2849|G protein-coupled receptor 26##BC113462|GPR26|2849|G protein-coupled receptor 26##DQ891852|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##DQ895042|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF081496|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF047472|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF047473|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC005138|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC022438|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF053304|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	0.315235	0.0	denovo_WM_7:-66:0.223
chr15	25661732	25661875	reg1007257.p1	5.116	+	L07557 NM_130838	-11154	-	AB061718 TSC_hg19_v1_chr15_+_25281192	-380654	+	AF019618 TSC_hg19_v1_chr15_+_25230248	-431579	+	TSC_hg19_v1_chr15_-_25684136 BC002582 AK056239	22298	-	TSC_hg19_v1_chr15_-_25684163 NM_000462 NM_130839 AF002224	22375	-	TSC_hg19_v1_chr15_-_26108463 EU831492 EU831579 NM_024490 BC052251	446550	-	L07557|UBE3A|7337|ubiquitin protein ligase E3A##NM_130838|UBE3A|7337|ubiquitin protein ligase E3A##AB061718|SNRPN|6638|small nuclear ribonucleoprotein polypeptide N##AF019618|PAR5|8123|Prader-Willi/Angelman syndrome-5##BC002582|UBE3A|7337|ubiquitin protein ligase E3A##AK056239|UBE3A|7337|ubiquitin protein ligase E3A##NM_000462|UBE3A|7337|ubiquitin protein ligase E3A##NM_130839|UBE3A|7337|ubiquitin protein ligase E3A##AF002224|UBE3A|7337|ubiquitin protein ligase E3A##EU831492|ATP10A|57194|ATPase, class V, type 10A##EU831579|ATP10A|57194|ATPase, class V, type 10A##NM_024490|ATP10A|57194|ATPase, class V, type 10A##BC052251|ATP10A|57194|ATPase, class V, type 10A	0.996088	0.0	denovo_WM_7:-4:0.315	denovo_WM_7:-5:0.315	denovo_WM_7:-6:0.315
chr3	185973625	185973766	reg1010896.p2	5.116	+	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	-146839	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	-147349	-	TSC_hg19_v1_chr3_-_185655843 AK315632 NM_001243879 NM_004593	-317817	-	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	106239	-	CU686840 AF161703 BC069478 AK314172 NM_017541	288445	-	TSC_hg19_v1_chr3_-_186285118 AK001422 BC025748	311413	-	BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##AK315632|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_001243879|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_004593|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AF161703|CRYGS|1427|crystallin, gamma S##BC069478|CRYGS|1427|crystallin, gamma S##AK314172|CRYGS|1427|crystallin, gamma S##NM_017541|CRYGS|1427|crystallin, gamma S##AK001422|TBCCD1|55171|TBCC domain containing 1##BC025748|TBCCD1|55171|TBCC domain containing 1	0.0	0.0	
chr3	195361392	195361505	reg1010838.p2	5.116	+	TSC_hg19_v1_chr3_-_195310989 NM_001647	-50418	-	J02611 BC007402 TSC_hg19_v1_chr3_-_195310812 AK312090 AK294523	-50618	-	TSC_hg19_v1_chr3_-_195306274 BT019860 BT019861 CR456838 CR541773 CU675645 DQ892668 DQ896124	-55146	-	BC053551 TSC_hg19_v1_chr3_+_195384934 BC062438 AK299148 AK057553 AK316025	23481	+	TSC_hg19_v1_chr3_+_195384941 BC073879 AK300421 BC064564 AK074764	23506	+	TSC_hg19_v1_chr3_+_195447752 NM_152673 AK311504	86307	+	NM_001647|APOD|347|apolipoprotein D##J02611|APOD|347|apolipoprotein D##BC007402|APOD|347|apolipoprotein D##AK312090|APOD|347|apolipoprotein D##AK294523|APOD|347|apolipoprotein D##BT019860|APOD|347|apolipoprotein D##BT019861|APOD|347|apolipoprotein D##CR456838|APOD|347|apolipoprotein D##CR541773|APOD|347|apolipoprotein D##DQ892668|APOD|347|apolipoprotein D##DQ896124|APOD|347|apolipoprotein D##BC053551|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##BC062438|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##AK299148|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##AK057553|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##AK316025|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##BC073879|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##BC064564|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##AK074764|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##NM_152673|MUC20|200958|mucin 20, cell surface associated##AK311504|MUC20|200958|mucin 20, cell surface associated	0.999385	0.0	
chr9	139894704	139894884	reg1004035.p1	5.116	+	AF102166 TSC_hg19_v1_chr9_-_139891017 BC007012 NM_004669	-3791	-	TSC_hg19_v1_chr9_+_139886873 BC002613 NM_183241 CU678068 BC038191	-7902	+	AK127160 NM_207510	-17350	+	BC008755 TSC_hg19_v1_chr9_-_139907635	12835	-	AK124899 NM_207511	27121	+	AB384556 AF327657 BC029282 BC064542 BC090860 TSC_hg19_v1_chr9_-_139922684 AK308738 AF178941	27845	-	AF102166|CLIC3|9022|chloride intracellular channel 3##BC007012|CLIC3|9022|chloride intracellular channel 3##NM_004669|CLIC3|9022|chloride intracellular channel 3##BC002613|C9orf142|286257|chromosome 9 open reading frame 142##NM_183241|C9orf142|286257|chromosome 9 open reading frame 142##BC038191|C9orf142|286257|chromosome 9 open reading frame 142##AK127160|LCNL1|401562|lipocalin-like 1##NM_207510|LCNL1|401562|lipocalin-like 1##BC008755|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##AK124899|C9orf139|401563|chromosome 9 open reading frame 139##NM_207511|C9orf139|401563|chromosome 9 open reading frame 139##AF327657|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##BC029282|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##BC064542|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##BC090860|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##AK308738|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2##AF178941|ABCA2|20|ATP-binding cassette, sub-family A (ABC1), member 2	0.0	0.0	
chr1	234457926	234458066	reg1010996.p1	5.115	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-107990	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	-417384	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	-708077	+	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	51376	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	156864	-	TSC_hg19_v1_chr1_-_234743489 BC020516	285530	-	BC037878|SLC35F3|148641|solute carrier family 35, member F3##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.99746	0.0	denovo_WM_7:-47:0.493	denovo_WM_7:-48:0.493
chr12	68840744	68840869	reg1005258.p1	5.115	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-114700	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-193502	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-221254	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	163840	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	163889	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	163902	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	1.210952	0.0	denovo_WM_7:-28:0.252
chr12	78139841	78139994	reg1008272.p1	5.115	+	BC136366 BC136367 TSC_hg19_v1_chr12_-_77459334 BC017481 NM_203394	-680628	-	BC000992 AY349166 U57646 TSC_hg19_v1_chr12_-_77272800 NM_001321	-867134	-	AB385406 CU690640 AF049612 AF161412 TSC_hg19_v1_chr12_+_77158026 AB097013 AB097035 AK292866 AK299089	-981891	+	NM_014903 AJ488201	85215	+	AK094616 NM_001135805	1117855	+	AK126908 NM_005639 TSC_hg19_v1_chr12_+_79258498	1118558	+	BC136366|E2F7|144455|E2F transcription factor 7##BC136367|E2F7|144455|E2F transcription factor 7##BC017481|E2F7|144455|E2F transcription factor 7##NM_203394|E2F7|144455|E2F transcription factor 7##BC000992|CSRP2|1466|cysteine and glycine-rich protein 2##AY349166|CSRP2|1466|cysteine and glycine-rich protein 2##U57646|CSRP2|1466|cysteine and glycine-rich protein 2##NM_001321|CSRP2|1466|cysteine and glycine-rich protein 2##AF049612|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AF161412|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097013|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097035|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK292866|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK299089|ZDHHC17|23390|zinc finger, DHHC-type containing 17##NM_014903|NAV3|89795|neuron navigator 3##AJ488201|NAV3|89795|neuron navigator 3##AK094616|SYT1|6857|synaptotagmin I##NM_001135805|SYT1|6857|synaptotagmin I##AK126908|SYT1|6857|synaptotagmin I##NM_005639|SYT1|6857|synaptotagmin I	0.990179	0.0	denovo_WM_7:-30:0.964
chr8	98787245	98787380	reg1009581.p1	5.115	+	AK308030 TSC_hg19_v1_chr8_+_98703378	-83934	+	BC022825 TSC_hg19_v1_chr8_+_98656510 BC009324 AF411226 AY082966 AY974040	-130699	+	TSC_hg19_v1_chr8_+_98656437 BC014977 AF501310	-130853	+	AY057051 AY261384 NM_018407 AF527412 TSC_hg19_v1_chr8_+_98787993	589	+	TSC_hg19_v1_chr8_+_98788065 BC031021 AK075326 BC014129 AL136942 AK311377 AX810698 AB528832 AF317417 AM392726 AM393691	813	+	TSC_hg19_v1_chr8_+_98881340 NM_002380 NM_030583 BC010444 AY358895 AK075489 AL833931 AL137638	94017	+	AK308030|MTDH|92140|metadherin##BC022825|MTDH|92140|metadherin##BC009324|MTDH|92140|metadherin##AF411226|MTDH|92140|metadherin##AY082966|MTDH|92140|metadherin##AY974040|MTDH|92140|metadherin##BC014977|MTDH|92140|metadherin##AF501310|MTDH|92140|metadherin##AY057051|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AY261384|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##NM_018407|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AF527412|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##BC031021|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AK075326|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##BC014129|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AL136942|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AK311377|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AF317417|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AM392726|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##AM393691|LAPTM4B|55353|lysosomal protein transmembrane 4 beta##NM_002380|MATN2|4147|matrilin 2##NM_030583|MATN2|4147|matrilin 2##BC010444|MATN2|4147|matrilin 2##AY358895|MATN2|4147|matrilin 2##AK075489|MATN2|4147|matrilin 2##AL833931|MATN2|4147|matrilin 2##AL137638|MATN2|4147|matrilin 2	1.985107	0.0	denovo_WM_7:-70:0.978	denovo_WM_7:-85:0.977
chr4	107957441	107957571	reg1010780.p1	5.114	+	NM_014421 AF177395	-54	-	NM_001195138	-668915	-	AK074305 NM_001163436	-719679	-	BC011392 AF016496 CR457028 CU690750 BC040940 TSC_hg19_v1_chr4_-_108641372 BC050627 AF033026 AK292774 AK297981 Y10387 BC032513 AF105227 NM_005443	683858	-	AK290344 NM_001136258 AF452717	788261	+	NM_001136257 NM_152621 BC028705 AK314049 BC041369	856918	+	NM_014421|DKK2|27123|dickkopf 2 homolog (Xenopus laevis)##AF177395|DKK2|27123|dickkopf 2 homolog (Xenopus laevis)##NM_001195138|LOC100507096|100507096|GTPase IMAP family member-like##AK074305|TBCK|93627|TBC1 domain containing kinase##NM_001163436|TBCK|93627|TBC1 domain containing kinase##BC011392|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AF016496|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##CR457028|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##BC040940|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##BC050627|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AF033026|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AK292774|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AK297981|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##Y10387|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##BC032513|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AF105227|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##NM_005443|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AK290344|SGMS2|166929|sphingomyelin synthase 2##NM_001136258|SGMS2|166929|sphingomyelin synthase 2##AF452717|SGMS2|166929|sphingomyelin synthase 2##NM_001136257|SGMS2|166929|sphingomyelin synthase 2##NM_152621|SGMS2|166929|sphingomyelin synthase 2##BC028705|SGMS2|166929|sphingomyelin synthase 2##AK314049|SGMS2|166929|sphingomyelin synthase 2##BC041369|SGMS2|166929|sphingomyelin synthase 2	0.999288	0.0	denovo_WM_7:18:0.739
chr10	21893688	21893865	reg1009411.p1	5.113	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-70151	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-70382	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-70500	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	398673	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	398889	-	NM_001199938	605135	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	1.966297	0.0	denovo_WM_7:22:0.988	denovo_WM_7:55:0.451	denovo_WM_7:56:0.517
chr16	11783062	11783170	reg1003155.p2	5.113	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-20818	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-102327	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-102929	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	53540	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	107935	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	107999	-	NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A	0.030881	0.0	
chr6	130006840	130006987	reg1011030.p2	5.113	+	NM_000426 NM_001079823 Z26653	-802600	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1165257	-	AK124031 NM_001164687	-1767155	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	24413	-	NM_001010876	175502	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	332812	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.200104	0.0	
chrX	135961523	135961635	reg1007551.p1	5.113	+	BC039856 NM_004840	-98077	-	TSC_hg19_v1_chrX_-_135863105 BX537390	-98470	-	D25304 TSC_hg19_v1_chrX_-_135863046 AK291742	-98526	-	TSC_hg19_v1_chrX_-_135962854 BC073747	1279	-	TSC_hg19_v1_chrX_-_135962882 BC006550 BC007435 BX647131 AK091520 AK096015 AK304573 AK304868 AK309911	1315	-	TSC_hg19_v1_chrX_-_135962939 NM_001164803 NM_002139	1356	-	BC039856|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##NM_004840|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##BX537390|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##D25304|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##AK291742|ARHGEF6|9459|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6##BC006550|RBMX|27316|RNA binding motif protein, X-linked##BC007435|RBMX|27316|RNA binding motif protein, X-linked##BX647131|RBMX|27316|RNA binding motif protein, X-linked##AK091520|RBMX|27316|RNA binding motif protein, X-linked##AK096015|RBMX|27316|RNA binding motif protein, X-linked##AK304573|RBMX|27316|RNA binding motif protein, X-linked##AK304868|RBMX|27316|RNA binding motif protein, X-linked##AK309911|RBMX|27316|RNA binding motif protein, X-linked##NM_001164803|RBMX|27316|RNA binding motif protein, X-linked##NM_002139|RBMX|27316|RNA binding motif protein, X-linked	0.996664	0.0	denovo_WM_7:14:0.964
chr19	50872863	50872946	reg1001211.p2	5.112	+	AF090386 DQ891993 DQ895183 CU676086 AF200345 BC029397 AK308013 AK314364 BC017842 AF098484 NM_004851	-4001	-	BC085008 BC006149 BC111705 BC040958 BC053864 BC065203 BC032360 AF090387 AF098485 AF200344 AK300884 BC019048 AK310134 TSC_hg19_v1_chr19_-_50848025	-24912	-	AF055989 NM_004977	-40271	-	TSC_hg19_v1_chr19_+_50879744 NM_007121 AK297978 BC047750 CR749648 U07132 BC074500 AK290855 BC033500	6823	+	AB209560 TSC_hg19_v1_chr19_+_50887563	14621	+	NM_002691 TSC_hg19_v1_chr19_+_50887592 M80397 M81735 BC008800	14700	+	AF090386|NAPSA|9476|napsin A aspartic peptidase##DQ891993|NAPSA|9476|napsin A aspartic peptidase##DQ895183|NAPSA|9476|napsin A aspartic peptidase##AF200345|NAPSA|9476|napsin A aspartic peptidase##BC029397|NAPSA|9476|napsin A aspartic peptidase##AK308013|NAPSA|9476|napsin A aspartic peptidase##AK314364|NAPSA|9476|napsin A aspartic peptidase##BC017842|NAPSA|9476|napsin A aspartic peptidase##AF098484|NAPSA|9476|napsin A aspartic peptidase##NM_004851|NAPSA|9476|napsin A aspartic peptidase##BC085008|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC006149|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC111705|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC040958|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC053864|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC065203|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC032360|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF090387|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF098485|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF200344|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK300884|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC019048|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK310134|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF055989|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_004977|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_007121|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK297978|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC047750|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##CR749648|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##U07132|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC074500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK290855|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC033500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AB209560|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##NM_002691|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M80397|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M81735|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##BC008800|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa	1.970155	0.0	denovo_WM_7:-68:0.944
chr19	10871404	10871547	reg1003962.p3	5.111	+	TSC_hg19_v1_chr19_+_10828827 BC039596 AK289831	-42616	+	TSC_hg19_v1_chr19_+_10828773 L36983	-42703	+	TSC_hg19_v1_chr19_+_10828765 BC054501	-42708	+	AB528501 DQ892640 DQ895878 BC002443 BC018831 TSC_hg19_v1_chr19_-_10946889 U41804 NM_006858	75449	-	BC157863 NM_001136482	87630	+	TSC_hg19_v1_chr19_+_10982255 NM_199141	110775	+	BC039596|DNM2|1785|dynamin 2##AK289831|DNM2|1785|dynamin 2##L36983|DNM2|1785|dynamin 2##BC054501|DNM2|1785|dynamin 2##DQ892640|TMED1|11018|transmembrane emp24 protein transport domain containing 1##DQ895878|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC002443|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC018831|TMED1|11018|transmembrane emp24 protein transport domain containing 1##U41804|TMED1|11018|transmembrane emp24 protein transport domain containing 1##NM_006858|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC157863|C19orf38|255809|chromosome 19 open reading frame 38##NM_001136482|C19orf38|255809|chromosome 19 open reading frame 38##NM_199141|CARM1|10498|coactivator-associated arginine methyltransferase 1	0.991833	0.0	denovo_WM_7:36:0.331	denovo_WM_7:37:0.331	denovo_WM_7:38:0.331
chr3	23988003	23988070	reg1007820.p2	5.111	+	TSC_hg19_v1_chr3_+_23987516 AK301925 NM_001145425	-474	+	TSC_hg19_v1_chr3_+_23986776 NM_005126 D16815 AK313464 BC045613 BC070035	-1221	+	NM_001253380 AY347528 L25899 AB529129 BT019672 CU677095 CU687134	-28764	+	GQ456948 GQ456949 GQ869479 GQ919288 AY286469 AY286468 AY286465 AY286471 TSC_hg19_v1_chr3_-_24536294 AY286467 AY286466 AK096628 M26747 NM_000461 NM_001128176 NM_001128177 NM_001252634 X04707	548208	-	AY286470 TSC_hg19_v1_chr3_-_24536493	548441	-	TSC_hg19_v1_chr3_+_25469751 AF157483 NM_016152	1481723	+	AK301925|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001145425|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_005126|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##D16815|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##AK313464|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC045613|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC070035|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001253380|RPL15|6138|ribosomal protein L15##AY347528|RPL15|6138|ribosomal protein L15##L25899|RPL15|6138|ribosomal protein L15##BT019672|RPL15|6138|ribosomal protein L15##GQ456948|THRB|7068|thyroid hormone receptor, beta##GQ456949|THRB|7068|thyroid hormone receptor, beta##GQ869479|THRB|7068|thyroid hormone receptor, beta##GQ919288|THRB|7068|thyroid hormone receptor, beta##AY286469|THRB|7068|thyroid hormone receptor, beta##AY286468|THRB|7068|thyroid hormone receptor, beta##AY286465|THRB|7068|thyroid hormone receptor, beta##AY286471|THRB|7068|thyroid hormone receptor, beta##AY286467|THRB|7068|thyroid hormone receptor, beta##AY286466|THRB|7068|thyroid hormone receptor, beta##AK096628|THRB|7068|thyroid hormone receptor, beta##M26747|THRB|7068|thyroid hormone receptor, beta##NM_000461|THRB|7068|thyroid hormone receptor, beta##NM_001128176|THRB|7068|thyroid hormone receptor, beta##NM_001128177|THRB|7068|thyroid hormone receptor, beta##NM_001252634|THRB|7068|thyroid hormone receptor, beta##X04707|THRB|7068|thyroid hormone receptor, beta##AY286470|THRB|7068|thyroid hormone receptor, beta##AF157483|RARB|5915|retinoic acid receptor, beta##NM_016152|RARB|5915|retinoic acid receptor, beta	0.0	0.0	
chr15	66301494	66301651	reg1005116.p1	5.110	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-139725	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-216979	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-217099	-	TSC_hg19_v1_chr15_-_66321664 AK054827	20121	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	244505	-	NM_133375 AK295392 BC022089	284073	+	AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like	0.998595	0.0	
chr19	1185736	1185884	reg1004853.p2	5.110	+	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	-11531	-	TSC_hg19_v1_chr19_-_1174260 AB023180	-11551	-	TSC_hg19_v1_chr19_-_1174256 BC052799	-11582	-	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	19996	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	20881	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	21363	+	AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2	0.0	0.0	
chr2	213968908	213969063	reg1010044.p2	5.110	+	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	-565670	-	AK316425 NM_001122634 AK302778 AY317138	-2510900	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	-2547596	+	AK301503 AF130863 NM_016260	46070	-	BC028936 NM_001079526	47347	-	AK124960 NM_001242575	179943	-	BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK316425|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122634|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK302778|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AY317138|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451	0.986173	0.0	denovo_WM_7:8:0.773
chr5	118355249	118355374	reg1010047.p1	5.110	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	-31073	-	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-2444797	-	TSC_hg19_v1_chr5_+_115898220 D28352	-2457087	+	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	51500	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	51854	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	249147	+	BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8	0.992399	0.0	denovo_WM_7:9:0.414
chr12	54609456	54609557	reg1010446.p2	5.109	+	BC088352 BC000417 TSC_hg19_v1_chr12_-_54582755 AK091468 AX747003 NM_001243789 NM_001243790 BC105607 AK001789 AK001235 AK222473 AK290274 NM_001243787 NM_001243788 NM_001243791 NM_014311	-26820	-	BC030212 TSC_hg19_v1_chr12_-_54541132	-68425	-	TSC_hg19_v1_chr12_+_54519846 BC009385	-89648	+	BC006821 NM_001127322 TSC_hg19_v1_chr12_-_54653330	43818	-	NM_001127321 TSC_hg19_v1_chr12_-_54653370	43865	-	TSC_hg19_v1_chr12_-_54673880 L07515 S62077	64376	-	BC088352|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC000417|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK091468|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243790|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC105607|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001235|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK222473|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK290274|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243787|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243788|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243791|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_014311|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC009385|LOC400043|400043|uncharacterized LOC400043##BC006821|CBX5|23468|chromobox homolog 5##NM_001127322|CBX5|23468|chromobox homolog 5##NM_001127321|CBX5|23468|chromobox homolog 5##L07515|CBX5|23468|chromobox homolog 5##S62077|CBX5|23468|chromobox homolog 5	0.999645	0.0	
chr5	153276388	153276513	reg1011035.p2	5.109	+	NM_000827 NM_001114183 TSC_hg19_v1_chr5_+_152870105 AK289565 AK295827 AB209094 AK294011 M81886 X58633 BC111734 M64752 AB527859 AB590570	-406185	+	AF242874 AB041228 AF292402 CU677771 CU688334 DQ891777 DQ894961 AF272363 BC016938 BC067776 NM_020167	-1491699	-	AK312702 AK308539 AK226046 BC114947 BC114967 NM_000171 NM_001146040 X52009	-1972088	-	TSC_hg19_v1_chr5_-_153418471 AF159700 BC011414 BC050701 AK024664 AK298943 AK095446 AK303865 AK313331 AK225821 NM_018691	142007	-	AK296468 NM_001135037 NM_001242336 NM_005927 TSC_hg19_v1_chr5_+_153418526	142074	+	TSC_hg19_v1_chr5_+_153418558 AK315573 BC026244	142110	+	NM_000827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##NM_001114183|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK289565|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK295827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AB209094|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK294011|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M81886|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##X58633|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##BC111734|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M64752|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AF242874|NMUR2|56923|neuromedin U receptor 2##AB041228|NMUR2|56923|neuromedin U receptor 2##AF292402|NMUR2|56923|neuromedin U receptor 2##DQ891777|NMUR2|56923|neuromedin U receptor 2##DQ894961|NMUR2|56923|neuromedin U receptor 2##AF272363|NMUR2|56923|neuromedin U receptor 2##BC016938|NMUR2|56923|neuromedin U receptor 2##BC067776|NMUR2|56923|neuromedin U receptor 2##NM_020167|NMUR2|56923|neuromedin U receptor 2##AK312702|GLRA1|2741|glycine receptor, alpha 1##AK308539|GLRA1|2741|glycine receptor, alpha 1##AK226046|GLRA1|2741|glycine receptor, alpha 1##BC114947|GLRA1|2741|glycine receptor, alpha 1##BC114967|GLRA1|2741|glycine receptor, alpha 1##NM_000171|GLRA1|2741|glycine receptor, alpha 1##NM_001146040|GLRA1|2741|glycine receptor, alpha 1##X52009|GLRA1|2741|glycine receptor, alpha 1##AF159700|FAM114A2|10827|family with sequence similarity 114, member A2##BC011414|FAM114A2|10827|family with sequence similarity 114, member A2##BC050701|FAM114A2|10827|family with sequence similarity 114, member A2##AK024664|FAM114A2|10827|family with sequence similarity 114, member A2##AK298943|FAM114A2|10827|family with sequence similarity 114, member A2##AK095446|FAM114A2|10827|family with sequence similarity 114, member A2##AK303865|FAM114A2|10827|family with sequence similarity 114, member A2##AK313331|FAM114A2|10827|family with sequence similarity 114, member A2##AK225821|FAM114A2|10827|family with sequence similarity 114, member A2##NM_018691|FAM114A2|10827|family with sequence similarity 114, member A2##AK296468|MFAP3|4238|microfibrillar-associated protein 3##NM_001135037|MFAP3|4238|microfibrillar-associated protein 3##NM_001242336|MFAP3|4238|microfibrillar-associated protein 3##NM_005927|MFAP3|4238|microfibrillar-associated protein 3##AK315573|MFAP3|4238|microfibrillar-associated protein 3##BC026244|MFAP3|4238|microfibrillar-associated protein 3	0.0	0.0	
chr5	36944788	36944911	reg1009813.p1	5.109	+	TSC_hg19_v1_chr5_+_36876945 BC146821 BX640644 BC131490 AK290347 BX538178 BX538177	-67779	+	TSC_hg19_v1_chr5_+_36876875 NM_015384 NM_133433 AJ627032 AJ640137	-67985	+	TSC_hg19_v1_chr5_-_36876762 AK000901	-68086	-	AK055192 TSC_hg19_v1_chr5_-_37185009	240128	-	TSC_hg19_v1_chr5_-_37249466 NM_023073	304617	-	AB018334 NM_004298	426037	-	BC146821|NIPBL|25836|Nipped-B homolog (Drosophila)##BX640644|NIPBL|25836|Nipped-B homolog (Drosophila)##BC131490|NIPBL|25836|Nipped-B homolog (Drosophila)##AK290347|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538178|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538177|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_015384|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_133433|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ627032|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ640137|NIPBL|25836|Nipped-B homolog (Drosophila)##AK000901|LOC646719|646719|uncharacterized LOC646719##AK055192|C5orf42|65250|chromosome 5 open reading frame 42##NM_023073|C5orf42|65250|chromosome 5 open reading frame 42##AB018334|NUP155|9631|nucleoporin 155kDa##NM_004298|NUP155|9631|nucleoporin 155kDa	0.544604	0.910353	denovo_WM_7:-1:0.236	CTCF.p2:57:0.910
chr7	27785948	27786104	reg1008320.p1	5.109	+	TSC_hg19_v1_chr7_+_27779811 U33821 BC050358	-6207	+	BC001764 TSC_hg19_v1_chr7_+_27779809	-6217	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	-6251	+	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	434175	-	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	434380	-	L05913 NM_182899	552913	+	U33821|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC050358|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5	1.98505	0.0	denovo_WM_7:14:0.784	denovo_WM_7:-16:0.325	denovo_WM_7:-24:0.434
chr11	59244378	59244500	reg1012268.p1	5.108	+	BC137028 BC137029 NM_001004708	-20018	+	BC137060 BC137061 NM_001004728	-33811	+	NM_001001954 BC136991	-54003	-	BC136893 BC136894 NM_001004705	434	+	NM_001004706	26609	+	NM_001004711	37946	+	BC137028|OR4D6|219983|olfactory receptor, family 4, subfamily D, member 6##BC137029|OR4D6|219983|olfactory receptor, family 4, subfamily D, member 6##NM_001004708|OR4D6|219983|olfactory receptor, family 4, subfamily D, member 6##BC137060|OR5A1|219982|olfactory receptor, family 5, subfamily A, member 1##BC137061|OR5A1|219982|olfactory receptor, family 5, subfamily A, member 1##NM_001004728|OR5A1|219982|olfactory receptor, family 5, subfamily A, member 1##NM_001001954|OR5A2|219981|olfactory receptor, family 5, subfamily A, member 2##BC136991|OR5A2|219981|olfactory receptor, family 5, subfamily A, member 2##BC136893|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##BC136894|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##NM_001004705|OR4D10|390197|olfactory receptor, family 4, subfamily D, member 10##NM_001004706|OR4D11|219986|olfactory receptor, family 4, subfamily D, member 11##NM_001004711|OR4D9|390199|olfactory receptor, family 4, subfamily D, member 9	0.0	0.0	
chr22	18479230	18479361	reg1004585.p1	5.108	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-221961	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-222072	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-222088	-	TSC_hg19_v1_chr22_-_18484268 AK127487	4933	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	27966	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	81393	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.99947	0.0	denovo_WM_7:-76:0.898
chr6	13458969	13459109	reg1011177.p1	5.108	+	AK027010 NM_001242630	-50671	-	AF151073 AK223445 AY542308 AY826820 TSC_hg19_v1_chr6_-_13328771 BC050465 AK057228 AK296391 BC007054 AL833474 NM_001143964 NM_001143965 NM_001143966 NM_016495	-130339	-	AK091836 AX747210 NM_001242698	-163222	-	AK055131 AF264036 NM_001242628	27359	-	TSC_hg19_v1_chr6_-_13487051 BC148295 BC119005 BC124557	28058	-	TSC_hg19_v1_chr6_-_13487810 AK000337 NM_001242629 NM_018988	28819	-	AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AF151073|TBC1D7|51256|TBC1 domain family, member 7##AK223445|TBC1D7|51256|TBC1 domain family, member 7##AY542308|TBC1D7|51256|TBC1 domain family, member 7##AY826820|TBC1D7|51256|TBC1 domain family, member 7##BC050465|TBC1D7|51256|TBC1 domain family, member 7##AK057228|TBC1D7|51256|TBC1 domain family, member 7##AK296391|TBC1D7|51256|TBC1 domain family, member 7##BC007054|TBC1D7|51256|TBC1 domain family, member 7##AL833474|TBC1D7|51256|TBC1 domain family, member 7##NM_001143964|TBC1D7|51256|TBC1 domain family, member 7##NM_001143965|TBC1D7|51256|TBC1 domain family, member 7##NM_001143966|TBC1D7|51256|TBC1 domain family, member 7##NM_016495|TBC1D7|51256|TBC1 domain family, member 7##AK091836|LOC100130357|100130357|uncharacterized LOC100130357##NM_001242698|LOC100130357|100130357|uncharacterized LOC100130357##AK055131|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AF264036|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242628|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC148295|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC119005|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##BC124557|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AK000337|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242629|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_018988|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	1.980513	0.0	denovo_WM_7:-26:0.975	denovo_WM_7:-41:0.976
chrX	104098900	104099007	reg1008145.p1	5.108	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	-287961	+	AK290196 TSC_hg19_v1_chrX_+_103810879	-288074	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-599367	-	BC108734 AF285597 BC042547 NM_031274	366400	-	TSC_hg19_v1_chrX_+_105066535 BX538345 NM_198465 BC108702	967585	+	TSC_hg19_v1_chrX_+_105066559 AK131549	967613	+	AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A##BX538345|NRK|203447|Nik related kinase##NM_198465|NRK|203447|Nik related kinase##BC108702|NRK|203447|Nik related kinase##AK131549|NRK|203447|Nik related kinase	0.330015	0.0	denovo_WM_7:10:0.330
chr1	113312899	113313079	reg1010832.p2	5.107	+	NM_001004440 NM_182759 BC112268 BC117479 BC143949 BC144042 BC144043 AY325116 AY325119	-49796	+	BC011803 BC064628 AL133644 AB527803 EU832164 EU832258 AK093270 AX748024 BC073828 NM_005167	-55078	-	TSC_hg19_v1_chr1_-_113250031 NM_001042678 NM_175744	-62963	-	BC045664 AK094064 NM_001166496 AF239919 AL162079 TSC_hg19_v1_chr1_-_113498818 AK296688 AK312500 BC026317	185728	-	TSC_hg19_v1_chr1_-_113498861 AK303603 AJ438943 NM_003051	185912	-	TSC_hg19_v1_chr1_+_113499054 BC023568 BC047723 BC062295 BX648855	186044	+	NM_001004440|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##NM_182759|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##BC112268|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##BC117479|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##BC143949|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##BC144042|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##BC144043|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##AY325116|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##AY325119|FAM19A3|284467|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3##BC011803|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##BC064628|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##AL133644|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##EU832164|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##EU832258|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##AK093270|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##BC073828|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##NM_005167|PPM1J|333926|protein phosphatase, Mg2+/Mn2+ dependent, 1J##NM_001042678|RHOC|389|ras homolog gene family, member C##NM_175744|RHOC|389|ras homolog gene family, member C##BC045664|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK094064|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##NM_001166496|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AF239919|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AL162079|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK296688|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK312500|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##BC026317|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AK303603|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##AJ438943|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##NM_003051|SLC16A1|6566|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)##BC062295|LOC100506392|100506392|uncharacterized LOC100506392##BX648855|LOC100506392|100506392|uncharacterized LOC100506392	0.122049	0.0	
chr3	5181662	5181783	reg1011977.p1	5.107	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	-17631	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	-17767	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-160368	+	TSC_hg19_v1_chr3_+_5229344 AK298511	47605	+	BC019088 NM_014674 TSC_hg19_v1_chr3_+_5229369	47641	+	TSC_hg19_v1_chr3_+_5229430 D86967	47711	+	AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##BC019088|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##NM_014674|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##D86967|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	0.9813	0.0	denovo_WM_7:-39:0.327	denovo_WM_7:-40:0.327	denovo_WM_7:-41:0.327
chr11	62586761	62586926	reg1008094.p1	5.106	+	AF112880 AF126246 AJ132712 AB528336 DQ892931 DQ896180 CU678798 BC028041 AB209915 BC004904 TSC_hg19_v1_chr11_-_62572913 AK304743 AK304082 AK307998 AK307961 AK304137 NM_001081491 NM_006362	-13948	-	BC042801 TSC_hg19_v1_chr11_-_62559478 BC008643 BC094837 BC035565 BC020914 NM_001080501 BC127679	-27386	-	TSC_hg19_v1_chr11_+_62554875 NM_199337 BC051355	-31978	+	BT019646 BT019647 CU678088 U26648 TSC_hg19_v1_chr11_-_62599128 AB464274	12032	-	TSC_hg19_v1_chr11_-_62599513 BC002645	12638	-	TSC_hg19_v1_chr11_-_62599524 AK296675 AK313497 BC012137 BX537426 NM_001244666 NM_003164	12759	-	AF112880|NXF1|10482|nuclear RNA export factor 1##AF126246|NXF1|10482|nuclear RNA export factor 1##AJ132712|NXF1|10482|nuclear RNA export factor 1##DQ892931|NXF1|10482|nuclear RNA export factor 1##DQ896180|NXF1|10482|nuclear RNA export factor 1##BC028041|NXF1|10482|nuclear RNA export factor 1##AB209915|NXF1|10482|nuclear RNA export factor 1##BC004904|NXF1|10482|nuclear RNA export factor 1##AK304743|NXF1|10482|nuclear RNA export factor 1##AK304082|NXF1|10482|nuclear RNA export factor 1##AK307998|NXF1|10482|nuclear RNA export factor 1##AK307961|NXF1|10482|nuclear RNA export factor 1##AK304137|NXF1|10482|nuclear RNA export factor 1##NM_001081491|NXF1|10482|nuclear RNA export factor 1##NM_006362|NXF1|10482|nuclear RNA export factor 1##BC042801|TMEM223|79064|transmembrane protein 223##BC008643|TMEM223|79064|transmembrane protein 223##BC094837|TMEM223|79064|transmembrane protein 223##BC035565|TMEM223|79064|transmembrane protein 223##BC020914|TMEM223|79064|transmembrane protein 223##NM_001080501|TMEM223|79064|transmembrane protein 223##BC127679|TMEM223|79064|transmembrane protein 223##NM_199337|TMEM179B|374395|transmembrane protein 179B##BC051355|TMEM179B|374395|transmembrane protein 179B##BT019646|STX5|6811|syntaxin 5##BT019647|STX5|6811|syntaxin 5##U26648|STX5|6811|syntaxin 5##BC002645|STX5|6811|syntaxin 5##AK296675|STX5|6811|syntaxin 5##AK313497|STX5|6811|syntaxin 5##BC012137|STX5|6811|syntaxin 5##BX537426|STX5|6811|syntaxin 5##NM_001244666|STX5|6811|syntaxin 5##NM_003164|STX5|6811|syntaxin 5	0.41947	0.0	denovo_WM_7:-5:0.222
chr2	80703113	80703293	reg1009764.p1	5.106	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-171360	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-171478	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-171678	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3983167	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3983192	-	NM_003849	3983382	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.08843	0.0	
chr3	186739670	186739850	reg1000445.p2	5.106	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-88	+	U67847 TSC_hg19_v1_chr3_+_186714361	-25412	+	X17247 TSC_hg19_v1_chr3_+_186648632	-91183	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	117496	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	175582	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	269879	-	AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)	0.0	0.0	
chr8	102855592	102855740	reg1009399.p1	5.106	+	NM_032041	-52228	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-52466	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-52483	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	280857	-	NM_001040630	281468	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	395507	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	0.0	0.0	
chr1	236442898	236443073	reg1008591.p1	5.105	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-137109	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-214245	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-214487	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	2203	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	2331	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	114698	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.995794	0.0	denovo_WM_7:-10:0.714
chr12	56696261	56696415	reg1005312.p1	5.105	+	NM_004077 TSC_hg19_v1_chr12_-_56694176	-2163	-	TSC_hg19_v1_chr12_-_56694158 BX640838 AF053631	-2194	-	TSC_hg19_v1_chr12_-_56694115 AK307625	-2220	-	TSC_hg19_v1_chr12_-_56709750 AF186113 AB015631 BC065015	13376	-	TSC_hg19_v1_chr12_-_56709793 BC001027 AK312921	13462	-	TSC_hg19_v1_chr12_-_56709831 AY032624 AY359102 NM_001190991 NM_014255	13641	-	NM_004077|CS|1431|citrate synthase##BX640838|CS|1431|citrate synthase##AF053631|CS|1431|citrate synthase##AK307625|CS|1431|citrate synthase##AF186113|CNPY2|10330|canopy 2 homolog (zebrafish)##AB015631|CNPY2|10330|canopy 2 homolog (zebrafish)##BC065015|CNPY2|10330|canopy 2 homolog (zebrafish)##BC001027|CNPY2|10330|canopy 2 homolog (zebrafish)##AK312921|CNPY2|10330|canopy 2 homolog (zebrafish)##AY032624|CNPY2|10330|canopy 2 homolog (zebrafish)##AY359102|CNPY2|10330|canopy 2 homolog (zebrafish)##NM_001190991|CNPY2|10330|canopy 2 homolog (zebrafish)##NM_014255|CNPY2|10330|canopy 2 homolog (zebrafish)	0.0	0.993059	CTCF.p2:-7:0.993
chr12	65009148	65009328	reg1004190.p1	5.105	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-4977	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-163345	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-205460	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	143859	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	143921	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	143946	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.0	0.0	
chr18	32630058	32630194	reg1011220.p2	5.105	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	-8670	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-71826	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-73167	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	190920	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	240046	-	TSC_hg19_v1_chr18_+_32870279 AK023456 AF159567 AK094216	240178	+	NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK023456|ZNF271|10778|zinc finger protein 271##AF159567|ZNF271|10778|zinc finger protein 271##AK094216|ZNF271|10778|zinc finger protein 271	0.959321	0.0	denovo_WM_7:-6:0.472	denovo_WM_7:-10:0.403
chr3	16587765	16587831	reg1012153.p1	5.105	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-32574	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-32780	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-281090	+	BX648638 AK303026 NM_001190811	58472	-	U65918 U66726 U66078 BC027595 NM_001351	59168	-	AB029015 NM_001144382	338653	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	0.020429	0.0	
chr3	28690978	28691066	reg1008721.p1	5.105	+	NM_001040432	-259036	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-300461	-	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	-300640	-	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	631942	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	1957000	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	1957381	+	NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)	0.443196	0.0	denovo_WM_7:-7:0.217
chr4	65579096	65579264	reg1009720.p2	5.105	+	AX771275 AX771283 AX771273 BX647590 AX771281 AX771280 AK290606 AX771274 BC072463 AL833108 NM_001010874 AX771267 AX771272	-304084	-	NM_015236	-3216342	+	TSC_hg19_v1_chr4_+_62066948 AK309793	-3512205	+	AK307826 NM_004439 NM_182472	956472	-	TSC_hg19_v1_chr4_-_66536182 AB209375	957017	-	CU688992 TSC_hg19_v1_chr4_-_68411171	2831943	-	BX647590|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##AK290606|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##BC072463|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##AL833108|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##NM_001010874|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##NM_015236|LPHN3|23284|latrophilin 3##AK309793|LPHN3|23284|latrophilin 3##AK307826|EPHA5|2044|EPH receptor A5##NM_004439|EPHA5|2044|EPH receptor A5##NM_182472|EPHA5|2044|EPH receptor A5##AB209375|EPHA5|2044|EPH receptor A5	0.202939	0.683552	CTCF.p2:-14:0.684
chr7	139586114	139586282	reg1010275.p2	5.105	+	NM_001061 NM_001166253 NM_030984 TSC_hg19_v1_chr7_+_139529052 BC041157 AK296069 AK301164 AK303440 AK301049 AB590730 M74055 S60133	-57106	+	TSC_hg19_v1_chr7_+_139478042 BC014117 NM_001130966 NM_001166254	-108159	+	TSC_hg19_v1_chr7_-_139477798 AF208291 AF326592 NM_001113239 NM_022740	-108293	-	AL137255 TSC_hg19_v1_chr7_-_139762712 BC044660	176413	-	BC081541 NM_022750	177322	-	TSC_hg19_v1_chr7_-_139876751 AB528281 AK131497 NM_030647	290664	-	NM_001061|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166253|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_030984|TBXAS1|6916|thromboxane A synthase 1 (platelet)##BC041157|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK296069|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301164|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK303440|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301049|TBXAS1|6916|thromboxane A synthase 1 (platelet)##M74055|TBXAS1|6916|thromboxane A synthase 1 (platelet)##S60133|TBXAS1|6916|thromboxane A synthase 1 (platelet)##BC014117|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001130966|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166254|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AF208291|HIPK2|28996|homeodomain interacting protein kinase 2##AF326592|HIPK2|28996|homeodomain interacting protein kinase 2##NM_001113239|HIPK2|28996|homeodomain interacting protein kinase 2##NM_022740|HIPK2|28996|homeodomain interacting protein kinase 2##AL137255|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##BC044660|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##BC081541|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##NM_022750|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##AK131497|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##NM_030647|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)	0.997755	0.0	
chr7	5245465	5245645	reg1008692.p2	5.105	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-15570	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-15640	+	TSC_hg19_v1_chr7_+_5229890 AK315468 BC004116 BC021200	-15658	+	BC016912 AF151808 NM_001033520 AY691426	8337	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	77051	+	TSC_hg19_v1_chr7_-_5460842 BC140723	215351	-	AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AK315468|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC004116|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021200|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4	2.063893	0.0	denovo_WM_7:-33:0.840	denovo_WM_7:-74:0.509	denovo_WM_7:-75:0.411
chr1	159893233	159893332	reg1010497.p1	5.104	+	BC089391 BC027874 NM_012337 BC064386 AF094758 AK308262 AK225566 AK225582 AK292249	-23357	-	HQ258612 BC132893 BC132895 NM_001013661	-60904	-	AK096506 NM_001134233	-68146	-	BC009357 TSC_hg19_v1_chr1_-_159895269	1983	-	TSC_hg19_v1_chr1_-_159895294 BC002616 D21261 GU727636 NM_003564 AK291562 AK298654	2005	-	TSC_hg19_v1_chr1_-_159915401 AB037776 BC030141 NM_001135050 NM_020789 AY358128	22112	-	BC089391|CCDC19|25790|coiled-coil domain containing 19##BC027874|CCDC19|25790|coiled-coil domain containing 19##NM_012337|CCDC19|25790|coiled-coil domain containing 19##BC064386|CCDC19|25790|coiled-coil domain containing 19##AF094758|CCDC19|25790|coiled-coil domain containing 19##AK308262|CCDC19|25790|coiled-coil domain containing 19##AK225566|CCDC19|25790|coiled-coil domain containing 19##AK225582|CCDC19|25790|coiled-coil domain containing 19##AK292249|CCDC19|25790|coiled-coil domain containing 19##HQ258612|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC132893|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC132895|VSIG8|391123|V-set and immunoglobulin domain containing 8##NM_001013661|VSIG8|391123|V-set and immunoglobulin domain containing 8##AK096506|C1orf204|284677|chromosome 1 open reading frame 204##NM_001134233|C1orf204|284677|chromosome 1 open reading frame 204##BC009357|TAGLN2|8407|transgelin 2##BC002616|TAGLN2|8407|transgelin 2##D21261|TAGLN2|8407|transgelin 2##GU727636|TAGLN2|8407|transgelin 2##NM_003564|TAGLN2|8407|transgelin 2##AK291562|TAGLN2|8407|transgelin 2##AK298654|TAGLN2|8407|transgelin 2##AB037776|IGSF9|57549|immunoglobulin superfamily, member 9##BC030141|IGSF9|57549|immunoglobulin superfamily, member 9##NM_001135050|IGSF9|57549|immunoglobulin superfamily, member 9##NM_020789|IGSF9|57549|immunoglobulin superfamily, member 9##AY358128|IGSF9|57549|immunoglobulin superfamily, member 9	0.0	0.0	
chr21	34733684	34733771	reg1002054.p1	5.104	+	AK222770 AK222812 AK312631 TSC_hg19_v1_chr21_+_34697277 BC021825 J03171 BC002590 AB528746 CU692410 DQ891323 DQ894507	-36409	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	-36509	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	-94973	+	TSC_hg19_v1_chr21_+_34775192 NM_005534 U05875	41469	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	42005	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	42021	+	AK222770|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK222812|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK312631|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC021825|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##J03171|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC002590|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ891323|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ894507|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_005534|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05875|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)	0.0	0.96901	CTCF.p2:0:0.969
chr9	127420654	127420830	reg1009590.p1	5.104	+	AK021895 AB074162 BC030772 TSC_hg19_v1_chr9_+_127420713 AB593023	-38	+	TSC_hg19_v1_chr9_-_127269711 BC032501 NM_004959	-151038	-	AY278562 NM_001161808	-207320	+	HQ692858 HQ709185 TSC_hg19_v1_chr9_-_127533591 U80802 AF004291 NM_001489 NM_033334 S83309 BC030600 BC042395 BC042406	112768	-	TSC_hg19_v1_chr9_+_127539438 AK074709 NM_182487 AB119055 AY358185	118758	+	BC150645 BC171828 BC171830 BC171837 BC127949 TSC_hg19_v1_chr9_+_127615749 NM_001045476	194982	+	AB593023|MIR181A2HG|100379345|MIR181A2 host gene (non-protein coding)##BC032501|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##NM_004959|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##AY278562|GPR144|347088|G protein-coupled receptor 144##NM_001161808|GPR144|347088|G protein-coupled receptor 144##HQ692858|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##HQ709185|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##U80802|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AF004291|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_001489|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_033334|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##S83309|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC030600|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042395|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042406|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AK074709|OLFML2A|169611|olfactomedin-like 2A##NM_182487|OLFML2A|169611|olfactomedin-like 2A##AB119055|OLFML2A|169611|olfactomedin-like 2A##AY358185|OLFML2A|169611|olfactomedin-like 2A##BC150645|WDR38|401551|WD repeat domain 38##BC171828|WDR38|401551|WD repeat domain 38##BC171830|WDR38|401551|WD repeat domain 38##BC171837|WDR38|401551|WD repeat domain 38##BC127949|WDR38|401551|WD repeat domain 38##NM_001045476|WDR38|401551|WD repeat domain 38	0.993622	0.0	denovo_WM_7:40:0.808
chr16	69570956	69571078	reg1010689.p1	5.103	+	BC004373 AK291576 TSC_hg19_v1_chr16_+_69458565	-112453	+	TSC_hg19_v1_chr16_+_69458522 AB009282 NM_030579 BX647922 BC014431	-112501	+	TSC_hg19_v1_chr16_-_69419884 AF002999 BC024890 NM_005652	-151157	-	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	28851	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	28899	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	29164	+	BC004373|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AK291576|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AB009282|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##NM_030579|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BX647922|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BC014431|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AF002999|TERF2|7014|telomeric repeat binding factor 2##BC024890|TERF2|7014|telomeric repeat binding factor 2##NM_005652|TERF2|7014|telomeric repeat binding factor 2##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive	0.998338	0.0	denovo_WM_7:-42:0.457	denovo_WM_7:-43:0.457
chr17_ctg5_hap1	631997	632124	reg1010615.p1	5.103	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.572726	0.043936	denovo_WM_7:6:0.271	denovo_WM_7:23:0.236
chr1	9130023	9130183	reg1006084.p2	5.103	+	TSC_hg19_v1_chr1_-_9129695 M55531 AK290398 AK294368 NM_001135585 NM_003039	-327	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	-462	-	TSC_hg19_v1_chr1_-_9129605 DQ892291 DQ895491 CU674838 AK300091	-504	-	DQ892804 DQ896051 TSC_hg19_v1_chr1_-_9189169 AK022194 AK292888 AK304154 AY768808 NM_024980 BC094733 BC018691	59118	-	TSC_hg19_v1_chr1_+_9294832 BC081559	164712	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	164814	+	M55531|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK290398|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK294368|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_001135585|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_003039|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892291|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ895491|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK300091|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892804|GPR157|80045|G protein-coupled receptor 157##DQ896051|GPR157|80045|G protein-coupled receptor 157##AK022194|GPR157|80045|G protein-coupled receptor 157##AK292888|GPR157|80045|G protein-coupled receptor 157##AK304154|GPR157|80045|G protein-coupled receptor 157##AY768808|GPR157|80045|G protein-coupled receptor 157##NM_024980|GPR157|80045|G protein-coupled receptor 157##BC018691|GPR157|80045|G protein-coupled receptor 157##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	1.919567	0.0	denovo_WM_7:33:0.797	denovo_WM_7:48:0.839
chr19	53282158	53282268	reg1010121.p1	5.103	+	BC028590 AK091389 AX746954 NM_001161501 NM_001161499 NM_001161500	-43915	-	AK097434 NM_030972	-49079	-	TSC_hg19_v1_chr19_-_53193740 AK289399 AK075066 NM_001242531 NM_001242538	-88403	-	BX640933 AK131231 NM_198457	7811	-	CR933598 AK304704 BC070146 AK293074 NM_006969	42689	-	TSC_hg19_v1_chr19_-_53360854 AX721127 CR936599 AK292449 CR936695 AK289841 AY442330 AY442331 NM_001008801 NM_199132	78663	-	BC028590|ZNF611|81856|zinc finger protein 611##AK091389|ZNF611|81856|zinc finger protein 611##NM_001161501|ZNF611|81856|zinc finger protein 611##NM_001161499|ZNF611|81856|zinc finger protein 611##NM_001161500|ZNF611|81856|zinc finger protein 611##AK097434|ZNF611|81856|zinc finger protein 611##NM_030972|ZNF611|81856|zinc finger protein 611##AK289399|ZNF83|55769|zinc finger protein 83##AK075066|ZNF83|55769|zinc finger protein 83##NM_001242531|ZNF83|55769|zinc finger protein 83##NM_001242538|ZNF83|55769|zinc finger protein 83##BX640933|ZNF600|162966|zinc finger protein 600##AK131231|ZNF600|162966|zinc finger protein 600##NM_198457|ZNF600|162966|zinc finger protein 600##CR933598|ZNF28|7576|zinc finger protein 28##AK304704|ZNF28|7576|zinc finger protein 28##BC070146|ZNF28|7576|zinc finger protein 28##AK293074|ZNF28|7576|zinc finger protein 28##NM_006969|ZNF28|7576|zinc finger protein 28##CR936599|ZNF468|90333|zinc finger protein 468##AK292449|ZNF468|90333|zinc finger protein 468##CR936695|ZNF468|90333|zinc finger protein 468##AK289841|ZNF468|90333|zinc finger protein 468##AY442330|ZNF468|90333|zinc finger protein 468##AY442331|ZNF468|90333|zinc finger protein 468##NM_001008801|ZNF468|90333|zinc finger protein 468##NM_199132|ZNF468|90333|zinc finger protein 468	0.0	0.0	
chr9	132565068	132565170	reg1002056.p1	5.103	+	AB590756 AF027740 AF217965 AF010316 TSC_hg19_v1_chr9_-_132515313 AK311947 BC008280 NM_004878	-49803	-	TSC_hg19_v1_chr9_+_132428029 AF061970	-137053	+	BC014645 NM_016307 TSC_hg19_v1_chr9_+_132427927	-137196	+	TSC_hg19_v1_chr9_+_132565426 AF317129 NM_014506	301	+	TSC_hg19_v1_chr9_+_132565465 BC015578 DQ893204 DQ893205 DQ893696 DQ896532 DQ896533 DQ896867	354	+	BT006931 AB590352 DQ892657 DQ895897 TSC_hg19_v1_chr9_-_132586385 BC014484 AK314505 AK075343	21261	-	AF027740|PTGES|9536|prostaglandin E synthase##AF217965|PTGES|9536|prostaglandin E synthase##AF010316|PTGES|9536|prostaglandin E synthase##AK311947|PTGES|9536|prostaglandin E synthase##BC008280|PTGES|9536|prostaglandin E synthase##NM_004878|PTGES|9536|prostaglandin E synthase##AF061970|PRRX2|51450|paired related homeobox 2##BC014645|PRRX2|51450|paired related homeobox 2##NM_016307|PRRX2|51450|paired related homeobox 2##AF317129|TOR1B|27348|torsin family 1, member B (torsin B)##NM_014506|TOR1B|27348|torsin family 1, member B (torsin B)##BC015578|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893204|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893205|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893696|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896532|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896533|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896867|TOR1B|27348|torsin family 1, member B (torsin B)##BT006931|TOR1A|1861|torsin family 1, member A (torsin A)##DQ892657|TOR1A|1861|torsin family 1, member A (torsin A)##DQ895897|TOR1A|1861|torsin family 1, member A (torsin A)##BC014484|TOR1A|1861|torsin family 1, member A (torsin A)##AK314505|TOR1A|1861|torsin family 1, member A (torsin A)##AK075343|TOR1A|1861|torsin family 1, member A (torsin A)	1.014482	0.0	denovo_WM_7:33:0.311	denovo_WM_7:34:0.314	denovo_WM_7:35:0.316
chr16	89827834	89827945	reg1007954.p1	5.102	+	NM_001113525 AK026482	-39924	+	TSC_hg19_v1_chr16_+_89787441 NM_152287 AK056405 BC105959 BC107603 BC111408	-40414	+	TSC_hg19_v1_chr16_-_89787328 AB527115 NM_004913	-40562	-	TSC_hg19_v1_chr16_-_89831446 AK301168	3565	-	BT007366 TSC_hg19_v1_chr16_-_89883059 AK299282 X99226 BC022498 BC008979 BC120979 BC127633 BC064540 BC120978 BC141971 BC141972 NM_000135 NM_001018112	55156	-	TSC_hg19_v1_chr16_+_89894882 BC111030 NM_032451 AJ422077 BC011119	67016	+	NM_001113525|ZNF276|92822|zinc finger protein 276##AK026482|ZNF276|92822|zinc finger protein 276##NM_152287|ZNF276|92822|zinc finger protein 276##AK056405|ZNF276|92822|zinc finger protein 276##BC105959|ZNF276|92822|zinc finger protein 276##BC107603|ZNF276|92822|zinc finger protein 276##BC111408|ZNF276|92822|zinc finger protein 276##NM_004913|C16orf7|9605|chromosome 16 open reading frame 7##AK301168|FANCA|2175|Fanconi anemia, complementation group A##BT007366|FANCA|2175|Fanconi anemia, complementation group A##AK299282|FANCA|2175|Fanconi anemia, complementation group A##X99226|FANCA|2175|Fanconi anemia, complementation group A##BC022498|FANCA|2175|Fanconi anemia, complementation group A##BC008979|FANCA|2175|Fanconi anemia, complementation group A##BC120979|FANCA|2175|Fanconi anemia, complementation group A##BC127633|FANCA|2175|Fanconi anemia, complementation group A##BC064540|FANCA|2175|Fanconi anemia, complementation group A##BC120978|FANCA|2175|Fanconi anemia, complementation group A##BC141971|FANCA|2175|Fanconi anemia, complementation group A##BC141972|FANCA|2175|Fanconi anemia, complementation group A##NM_000135|FANCA|2175|Fanconi anemia, complementation group A##NM_001018112|FANCA|2175|Fanconi anemia, complementation group A##BC111030|SPIRE2|84501|spire homolog 2 (Drosophila)##NM_032451|SPIRE2|84501|spire homolog 2 (Drosophila)##AJ422077|SPIRE2|84501|spire homolog 2 (Drosophila)##BC011119|SPIRE2|84501|spire homolog 2 (Drosophila)	1.291481	0.0	denovo_WM_7:-50:0.295	denovo_WM_7:-51:0.295	denovo_WM_7:-52:0.299
chr12	55378935	55379070	reg1010618.p2	5.101	+	AK303223 NM_001136030 TSC_hg19_v1_chr12_-_55378533	-500	-	BC132732 BC132734 NM_001098815	-3381	-	NM_058173 AF414087 AY359062 BC111421 AY651259	-130670	+	NM_021191 AK314136	34768	+	BC136988 NM_001005243	144506	+	AB529271 NM_001005280	235806	+	AK303223|KIAA0748|9840|KIAA0748##NM_001136030|KIAA0748|9840|KIAA0748##BC132732|KIAA0748|9840|KIAA0748##BC132734|KIAA0748|9840|KIAA0748##NM_001098815|KIAA0748|9840|KIAA0748##NM_058173|MUCL1|118430|mucin-like 1##AF414087|MUCL1|118430|mucin-like 1##AY359062|MUCL1|118430|mucin-like 1##BC111421|MUCL1|118430|mucin-like 1##AY651259|MUCL1|118430|mucin-like 1##NM_021191|NEUROD4|58158|neurogenic differentiation 4##AK314136|NEUROD4|58158|neurogenic differentiation 4##BC136988|OR9K2|441639|olfactory receptor, family 9, subfamily K, member 2##NM_001005243|OR9K2|441639|olfactory receptor, family 9, subfamily K, member 2##NM_001005280|OR10A7|121364|olfactory receptor, family 10, subfamily A, member 7	0.433638	0.0	denovo_WM_7:15:0.353
chr21	35340375	35340550	reg1007211.p1	5.101	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-52370	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-149792	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-325607	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	105379	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	105467	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	395884	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	1.996013	0.0	
chr21	39236214	39236365	reg1008555.p1	5.101	+	NM_130438 NM_001396 U52373 D85759 U58496	-443669	+	D86550 NM_130436	-445083	+	AF108830 NM_101395 AB015283 AB015284	-496419	+	D87327 NM_002240 TSC_hg19_v1_chr21_-_39288761	52422	-	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	257112	-	BC013327 NM_002243	392374	+	NM_130438|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_001396|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U52373|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D85759|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U58496|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D86550|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_130436|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AF108830|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_101395|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015283|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015284|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D87327|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_002240|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	0.0	0.0	
chr4	139888669	139888831	reg1010287.p1	5.101	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-725386	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-1435108	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-1435158	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	48243	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	116653	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	116861	-	AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.0	0.0	
chr7	73625516	73625639	reg1009310.p1	5.101	+	TSC_hg19_v1_chr7_+_73624361 AF252613	-1223	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	-1241	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	-1295	+	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	43134	-	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	43159	-	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	78210	+	AF252613|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2	0.0	0.01779	
chr11	57528896	57529009	reg1001039.p1	5.099	+	NM_001145101	-9700	-	TSC_hg19_v1_chr11_+_57508992 BC021122	-19952	+	NM_170746 BC111087 AF536829 AJ276250 TSC_hg19_v1_chr11_+_57508954 AJ276249 BC064570	-20100	+	NM_001085458 NM_001085459 NM_001085460 NM_001085461 NM_001085462 NM_001085463 NM_001085464 NM_001085465 NM_001085466 NM_001085467 NM_001085468 NM_001085469 NM_001206883 NM_001206884 NM_001206885 NM_001206886 NM_001206887 NM_001206888 NM_001206889 NM_001206890 NM_001206891 NM_001331 TSC_hg19_v1_chr11_+_57529331 AF062317 AF062318 AF062319 AF062320 AF062321 AF062322 AF062323 AF062324 AF062325 AF062326 AF062327 AF062328 AF062329 AF062330 AF062331 AF062332 AF062333 AF062334 AF062335 AF062336 AF062337 AF062338 AF062339 AF062340 AF062341 AF062342 AF062343 AF062344 BC075795	387	+	BC110819 NM_001005212	262400	+	BC151146 BC151147 NM_001005186	269460	+	NM_001145101|BTBD18|643376|BTB (POZ) domain containing 18##BC021122|C11orf31|280636|chromosome 11 open reading frame 31##NM_170746|C11orf31|280636|chromosome 11 open reading frame 31##AF536829|C11orf31|280636|chromosome 11 open reading frame 31##AJ276250|C11orf31|280636|chromosome 11 open reading frame 31##AJ276249|C11orf31|280636|chromosome 11 open reading frame 31##BC064570|C11orf31|280636|chromosome 11 open reading frame 31##NM_001085458|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085459|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085460|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085461|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085462|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085463|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085464|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085465|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085466|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085467|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085468|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085469|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206883|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206884|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206885|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206886|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206887|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206888|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206889|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206890|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206891|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062317|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062318|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062319|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062320|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062321|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062322|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062323|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062324|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062325|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062326|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062327|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062328|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062329|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062330|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062332|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062333|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062334|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062335|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062336|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062337|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062338|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062339|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062340|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062341|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062342|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062343|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062344|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC075795|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC110819|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##NM_001005212|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##BC151146|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##BC151147|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005186|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1	0.0	0.031376	
chr1	198633557	198633737	reg1002314.p1	5.099	+	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-25317	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-25422	+	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	-25474	+	TSC_hg19_v1_chr1_-_198906559 EF413001	272900	-	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	1363222	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1378077	+	BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2	0.0	0.0	
chr12	133396103	133396233	reg1001605.p1	5.099	+	BC048203 TSC_hg19_v1_chr12_-_133372555	-23611	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-57748	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-89610	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	8811	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	9130	-	TSC_hg19_v1_chr12_-_133405429 BC142658 BC146675 NM_001172557 BC060826	9294	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3##BC142658|GOLGA3|2802|golgin A3##BC146675|GOLGA3|2802|golgin A3##NM_001172557|GOLGA3|2802|golgin A3##BC060826|GOLGA3|2802|golgin A3	0.0	0.0	
chr8	20961647	20961747	reg1011438.p1	5.099	+	AF123652 AF123654 AF123655 AF123656 AF123657 AF123658 EU446940 BC075006 BC075007 AF123659 NM_021020	-848951	-	TSC_hg19_v1_chr8_+_20054905 X62949 BC003100 AK298819 AB208806 L35249 CU688958 DQ891837 DQ895023 BC007309	-906775	+	TSC_hg19_v1_chr8_+_20054891 AK294163 BC030640 AK312372	-906804	+	AY326396 AY941828 U93703 AB529071 CU692022 AF002700 BC033096 TSC_hg19_v1_chr8_-_21645836 AK299623 U97145	684095	-	TSC_hg19_v1_chr8_-_21646372 BC041688 NM_001165038 NM_001165039 NM_001495	684669	-	AB528923 AF034970 CU689448 DQ890550 DQ896808 AK292126 BC032623 AK226110 AK296671 TSC_hg19_v1_chr8_-_21771202 NM_003974	809468	-	AF123652|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123654|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123655|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123656|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123657|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123658|LZTS1|11178|leucine zipper, putative tumor suppressor 1##EU446940|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075006|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075007|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123659|LZTS1|11178|leucine zipper, putative tumor suppressor 1##NM_021020|LZTS1|11178|leucine zipper, putative tumor suppressor 1##X62949|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC003100|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK298819|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AB208806|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##L35249|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ891837|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ895023|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC007309|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK294163|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC030640|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK312372|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AY326396|GFRA2|2675|GDNF family receptor alpha 2##AY941828|GFRA2|2675|GDNF family receptor alpha 2##U93703|GFRA2|2675|GDNF family receptor alpha 2##AF002700|GFRA2|2675|GDNF family receptor alpha 2##AK299623|GFRA2|2675|GDNF family receptor alpha 2##U97145|GFRA2|2675|GDNF family receptor alpha 2##BC041688|GFRA2|2675|GDNF family receptor alpha 2##NM_001165038|GFRA2|2675|GDNF family receptor alpha 2##NM_001165039|GFRA2|2675|GDNF family receptor alpha 2##NM_001495|GFRA2|2675|GDNF family receptor alpha 2##AF034970|DOK2|9046|docking protein 2, 56kDa##DQ890550|DOK2|9046|docking protein 2, 56kDa##DQ896808|DOK2|9046|docking protein 2, 56kDa##AK292126|DOK2|9046|docking protein 2, 56kDa##BC032623|DOK2|9046|docking protein 2, 56kDa##AK226110|DOK2|9046|docking protein 2, 56kDa##AK296671|DOK2|9046|docking protein 2, 56kDa##NM_003974|DOK2|9046|docking protein 2, 56kDa	0.996744	0.0	denovo_WM_7:-26:0.449	denovo_WM_7:-27:0.449
chr16	30470963	30471143	reg1005047.p3	5.098	+	TSC_hg19_v1_chr16_-_30457197 AK093889 AX748354 NM_012248	-13824	-	BC016643 BC002381 U43286 TSC_hg19_v1_chr16_-_30457196 AK092003 AK303275 AX747304	-13871	-	CR457335 TSC_hg19_v1_chr16_-_30441339 AK024843 AF212242 AF210430 AY453409 BC001344 NM_024096	-29714	-	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	12947	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	13019	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	13080	+	AK093889|SEPHS2|22928|selenophosphate synthetase 2##NM_012248|SEPHS2|22928|selenophosphate synthetase 2##BC016643|SEPHS2|22928|selenophosphate synthetase 2##BC002381|SEPHS2|22928|selenophosphate synthetase 2##U43286|SEPHS2|22928|selenophosphate synthetase 2##AK092003|SEPHS2|22928|selenophosphate synthetase 2##AK303275|SEPHS2|22928|selenophosphate synthetase 2##CR457335|DCTPP1|79077|dCTP pyrophosphatase 1##AK024843|DCTPP1|79077|dCTP pyrophosphatase 1##AF212242|DCTPP1|79077|dCTP pyrophosphatase 1##AF210430|DCTPP1|79077|dCTP pyrophosphatase 1##AY453409|DCTPP1|79077|dCTP pyrophosphatase 1##BC001344|DCTPP1|79077|dCTP pyrophosphatase 1##NM_024096|DCTPP1|79077|dCTP pyrophosphatase 1##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)	0.839203	0.0	denovo_WM_7:16:0.522
chr22	38795477	38795601	reg1010330.p1	5.098	+	TSC_hg19_v1_chr22_-_38794883 AK307225 AK310303	-671	-	AB024597 NM_001894	-81451	-	TSC_hg19_v1_chr22_-_38713439 NM_152221	-82125	-	NM_004981 S72503 U07364	44493	-	CR456507 BC039618 U24056 NM_152868 BC032562	55569	-	TSC_hg19_v1_chr22_+_38864047 AK292102 AL035082 NM_006855 NM_016657 AK222930 BC001277 AK129888 AK223238 AL035081 BC096722 BC098131 BC098156 BC098336 CR456509 CU013108 CU013396 DQ891740 DQ894917 AB528157 CU674644	68587	+	AK307225|LOC400927|400927|TPTE and PTEN homologous inositol lipid phosphatase pseudogene##AB024597|CSNK1E|1454|casein kinase 1, epsilon##NM_001894|CSNK1E|1454|casein kinase 1, epsilon##NM_152221|CSNK1E|1454|casein kinase 1, epsilon##NM_004981|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##S72503|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U07364|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##CR456507|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC039618|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##U24056|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##NM_152868|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##BC032562|KCNJ4|3761|potassium inwardly-rectifying channel, subfamily J, member 4##AK292102|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##AL035082|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##NM_006855|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##NM_016657|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##AK222930|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##BC001277|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##AK129888|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##AK223238|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##AL035081|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##BC096722|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##BC098131|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##BC098156|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##BC098336|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##CR456509|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##CU013108|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##CU013396|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##DQ891740|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3##DQ894917|KDELR3|11015|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	1.763768	0.0	denovo_WM_7:50:0.871	denovo_WM_7:-72:0.664
chr5	115910499	115910679	reg1004048.p1	5.098	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-75	-	TSC_hg19_v1_chr5_+_115898220 D28352	-12365	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-489868	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2413649	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2496222	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2496576	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr21	34747164	34747344	reg1009009.p2	5.097	+	AK222770 AK222812 AK312631 TSC_hg19_v1_chr21_+_34697277 BC021825 J03171 BC002590 AB528746 CU692410 DQ891323 DQ894507	-49936	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	-50036	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	-108500	+	TSC_hg19_v1_chr21_+_34775192 NM_005534 U05875	27942	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	28478	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	28494	+	AK222770|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK222812|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK312631|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC021825|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##J03171|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC002590|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ891323|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ894507|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_005534|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05875|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)	0.0	0.0	CTCF.p2:-107:0.987
chr2	44432506	44432619	reg1007140.p1	5.097	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-36452	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-36547	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-209423	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	70073	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	154308	-	DQ023503 DQ023504 DQ023505 NM_006036	155250	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.0	0.0	
chr1	24055190	24055351	reg1004110.p2	5.096	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-36971	+	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	-36990	+	NM_002167 X69111	-168986	-	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	14634	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	14713	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	49499	-	BC018970|RPL11|6135|ribosomal protein L11##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AL049675|LOC100506963|100506963|uncharacterized LOC100506963	0.953751	0.0	denovo_WM_7:0:0.238	denovo_WM_7:0:0.238	denovo_WM_7:-1:0.238	denovo_WM_7:-2:0.241
chr6	53583838	53583993	reg1009867.p1	5.096	+	EF633513 NM_001003760	-53410	-	TSC_hg19_v1_chr6_-_53409900 AK304288 NM_001197115 NM_001498	-174004	-	TSC_hg19_v1_chr6_-_53409836 AK313480	-174080	-	TSC_hg19_v1_chr6_+_53659294 AK021896	75385	+	TSC_hg19_v1_chr6_+_53659776 BC003193 NM_018214	75844	+	TSC_hg19_v1_chr6_+_53659802 AF332199 AK292248 AB527517 AF359380 CU678434 EU176638 AK001637	76016	+	EF633513|KLHL31|401265|kelch-like 31 (Drosophila)##NM_001003760|KLHL31|401265|kelch-like 31 (Drosophila)##AK304288|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##NM_001197115|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##NM_001498|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AK313480|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AK021896|LRRC1|55227|leucine rich repeat containing 1##BC003193|LRRC1|55227|leucine rich repeat containing 1##NM_018214|LRRC1|55227|leucine rich repeat containing 1##AF332199|LRRC1|55227|leucine rich repeat containing 1##AK292248|LRRC1|55227|leucine rich repeat containing 1##AF359380|LRRC1|55227|leucine rich repeat containing 1##EU176638|LRRC1|55227|leucine rich repeat containing 1##AK001637|LRRC1|55227|leucine rich repeat containing 1	0.0	0.919061	CTCF.p2:-61:0.919
chr6_cox_hap2	3307621	3307801	reg1001065.p2	5.096	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr1	182618192	182618297	reg1005342.p1	5.095	+	AF493937 BT006638 CU675307 AB528682 U94829 U70426 BC006243 TSC_hg19_v1_chr1_-_182573525 AK301261 AK311880 NM_002928	-44774	-	CU675308 TSC_hg19_v1_chr1_+_182569465	-48798	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	-59861	-	BC069677 BC069718 BC103865 BC103866 BC103867 AF297015 NM_001102450 NM_033345	23797	-	NM_001200050 NM_001200051 NM_001200052 NM_001200056 NM_030769 BC042003	140340	+	BC034966 AK313225 BC058003 TSC_hg19_v1_chr1_+_182758907 AK297017 AK301068 AY336748	140647	+	AF493937|RGS16|6004|regulator of G-protein signaling 16##BT006638|RGS16|6004|regulator of G-protein signaling 16##U94829|RGS16|6004|regulator of G-protein signaling 16##U70426|RGS16|6004|regulator of G-protein signaling 16##BC006243|RGS16|6004|regulator of G-protein signaling 16##AK301261|RGS16|6004|regulator of G-protein signaling 16##AK311880|RGS16|6004|regulator of G-protein signaling 16##NM_002928|RGS16|6004|regulator of G-protein signaling 16##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC069677|RGS8|85397|regulator of G-protein signaling 8##BC069718|RGS8|85397|regulator of G-protein signaling 8##BC103865|RGS8|85397|regulator of G-protein signaling 8##BC103866|RGS8|85397|regulator of G-protein signaling 8##BC103867|RGS8|85397|regulator of G-protein signaling 8##AF297015|RGS8|85397|regulator of G-protein signaling 8##NM_001102450|RGS8|85397|regulator of G-protein signaling 8##NM_033345|RGS8|85397|regulator of G-protein signaling 8##NM_001200050|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200051|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200052|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200056|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_030769|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC042003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC034966|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK313225|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC058003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK297017|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK301068|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AY336748|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)	0.810138	0.0	denovo_WM_7:0:0.789
chr12	10517826	10517912	reg1002838.p2	5.095	+	NM_002262 NM_007334 AF498040 AF498041 AY327501 U30610 BC028009 AB009597 AJ000001	-57337	+	AK291506 AY227806 NM_001114396	-60823	+	AF287012 TSC_hg19_v1_chr12_+_10365506 AF087847 AK303581 AK315418 AK074195 BC028315 NM_031412 BC009309 AL136676 BX648781 BC008891	-152393	+	BC039836 AK226161 AK292059 NM_007360	24765	-	TSC_hg19_v1_chr12_-_10562143 AK292020 AK310717 AB590270 AF350018 AF350019 CU676066 DQ891978 DQ895169 BC017784 U96845 AJ001683 NM_013431	44379	-	AF461811 NM_001199805	44875	-	NM_002262|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_007334|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498040|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498041|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY327501|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##U30610|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC028009|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AB009597|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AJ000001|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AK291506|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY227806|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_001114396|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF287012|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AF087847|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK303581|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK315418|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK074195|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC028315|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_031412|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC009309|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AL136676|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BX648781|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC008891|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC039836|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK226161|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292059|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##NM_007360|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292020|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##AK310717|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##AF350018|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AF350019|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##DQ891978|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##DQ895169|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##BC017784|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##U96845|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AJ001683|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##NM_013431|KLRC4|8302|killer cell lectin-like receptor subfamily C, member 4##AF461811|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough##NM_001199805|KLRC4-KLRK1|100528032|KLRC4-KLRK1 readthrough	0.0	0.0	
chr15	44677312	44677429	reg1003756.p2	5.095	+	TSC_hg19_v1_chr15_+_44581110 AK298564 AL832333 AK291026 CU680228 CU687742	-96235	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	-96411	+	AK098265 TSC_hg19_v1_chr15_+_44580937	-96429	+	NM_016396	42208	+	TSC_hg19_v1_chr15_+_44719826 AK291230 AF161478 AF161543	42426	+	TSC_hg19_v1_chr15_+_44719836 BC018623 AK226094 DQ128104 BC035744	42540	+	AK298564|CASC4|113201|cancer susceptibility candidate 4##AL832333|CASC4|113201|cancer susceptibility candidate 4##AK291026|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##NM_016396|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK291230|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161478|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161543|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC018623|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK226094|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##DQ128104|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC035744|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	0.0	0.0	
chr19	2074220	2074342	reg1002933.p1	5.095	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-23048	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-28040	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-32231	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	10962	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	21984	-	TSC_hg19_v1_chr19_-_2096297 AL832474	22013	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	0.680205	0.0	denovo_WM_7:-18:0.459	denovo_WM_7:107:0.642
chr20	52346195	52346375	reg1004818.p1	5.095	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-135486	-	AF041259 NM_006526	-146650	-	AK302570 NM_001193421	-544464	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	340777	-	AK315220 NM_003657	341018	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	444235	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr21	32403326	32403405	reg1004377.p2	5.095	+	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-149507	-	AJ457063 AB096962 NM_181606	-201377	-	BC130397 BC133033 AB096961 AJ457064 NM_175857	-217801	-	AB096964 NM_001099219	7429	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	527993	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	628642	+	AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##BC130397|KRTAP8-1|337879|keratin associated protein 8-1##BC133033|KRTAP8-1|337879|keratin associated protein 8-1##AB096961|KRTAP8-1|337879|keratin associated protein 8-1##AJ457064|KRTAP8-1|337879|keratin associated protein 8-1##NM_175857|KRTAP8-1|337879|keratin associated protein 8-1##AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble	1.154803	0.0	denovo_WM_7:90:0.263	denovo_WM_7:91:0.219
chr10	4060587	4060767	reg1007996.p1	5.094	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-233168	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-233366	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-845672	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	807741	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	944837	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	944946	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	1.008041	0.0	denovo_WM_7:35:0.832
chr19	27865115	27865224	reg1007846.p2	5.094	+	TSC_hg19_v1_chr19_+_24269988 AF054180 NM_203282 BC056243 AK291286 BC043147 BC139749	-3595200	+	TSC_hg19_v1_chr19_+_24216256 AK092150 AK092080 AK303431	-3648913	+	TSC_hg19_v1_chr19_+_24097711 NM_001244038 AX721133 BC046415 AB593087	-3767475	+	TSC_hg19_v1_chr19_+_28284377 BC024732	419219	+	TSC_hg19_v1_chr19_-_28284831 AK311452	419664	-	TSC_hg19_v1_chr19_+_28284946 AK095009	419759	+	AF054180|ZNF254|9534|zinc finger protein 254##NM_203282|ZNF254|9534|zinc finger protein 254##BC056243|ZNF254|9534|zinc finger protein 254##AK291286|ZNF254|9534|zinc finger protein 254##BC043147|ZNF254|9534|zinc finger protein 254##BC139749|ZNF254|9534|zinc finger protein 254##AK303431|ZNF254|9534|zinc finger protein 254##NM_001244038|ZNF726|730087|zinc finger protein 726##BC046415|ZNF726|730087|zinc finger protein 726##AK311452|LOC148189|148189|uncharacterized LOC148189	0.0	0.0	
chr12	123478087	123478267	reg1008433.p1	5.093	+	AB040953 TSC_hg19_v1_chr12_-_123466210	-11945	-	TSC_hg19_v1_chr12_+_123465384 AK027285	-12761	+	EU624491 AF267748 TSC_hg19_v1_chr12_+_123465249 AB035384 AK315759 BC001958 BC015569	-13012	+	BC141813 TSC_hg19_v1_chr12_-_123590060	111878	-	NM_020845	116797	-	AB040890 TSC_hg19_v1_chr12_-_123635595	157321	-	AB040953|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK027285|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##EU624491|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##AF267748|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##AB035384|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##AK315759|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##BC001958|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##BC015569|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##BC141813|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2##NM_020845|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2##AB040890|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2	0.0	0.0	
chr13	106752991	106753113	reg1008944.p1	5.093	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-634461	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	-634748	+	NM_000452 U10417	-3033857	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	434297	-	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	467433	-	NM_001080396	1766407	-	NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A	0.9862	0.0	denovo_WM_7:-17:0.938
chr15	79135055	79135210	reg1007605.p2	5.093	+	AY327122 AF140675 TSC_hg19_v1_chr15_-_79103698 BC061631 NM_014272 AK299844	-31382	-	TSC_hg19_v1_chr15_+_79102818 AK095823	-32305	+	TSC_hg19_v1_chr15_-_78933573 U62439 Y08416 BC096080 BC096081 BC096082 BC096083 NM_000750 U48861	-201559	-	TSC_hg19_v1_chr15_+_79165157 NM_006791 NM_206839	30042	+	TSC_hg19_v1_chr15_+_79165283 AK098485 AF218011 AF100615 AY148481 AK296650 BC002936 BC022845	30115	+	TSC_hg19_v1_chr15_+_79165314 AK310702 BC141840 AF070664 AF167173 AK310592 AL137697 AF109188 AF161546	30187	+	AY327122|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##AF140675|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##BC061631|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##NM_014272|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##AK299844|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##AK095823|MORF4L1|10933|mortality factor 4 like 1##U62439|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##Y08416|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096080|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096081|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096082|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096083|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##NM_000750|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##U48861|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##NM_006791|MORF4L1|10933|mortality factor 4 like 1##NM_206839|MORF4L1|10933|mortality factor 4 like 1##AK098485|MORF4L1|10933|mortality factor 4 like 1##AF218011|MORF4L1|10933|mortality factor 4 like 1##AF100615|MORF4L1|10933|mortality factor 4 like 1##AY148481|MORF4L1|10933|mortality factor 4 like 1##AK296650|MORF4L1|10933|mortality factor 4 like 1##BC002936|MORF4L1|10933|mortality factor 4 like 1##BC022845|MORF4L1|10933|mortality factor 4 like 1##AK310702|MORF4L1|10933|mortality factor 4 like 1##BC141840|MORF4L1|10933|mortality factor 4 like 1##AF070664|MORF4L1|10933|mortality factor 4 like 1##AF167173|MORF4L1|10933|mortality factor 4 like 1##AK310592|MORF4L1|10933|mortality factor 4 like 1##AL137697|MORF4L1|10933|mortality factor 4 like 1##AF109188|MORF4L1|10933|mortality factor 4 like 1##AF161546|MORF4L1|10933|mortality factor 4 like 1	1.303127	0.0	denovo_WM_7:41:0.476	denovo_WM_7:42:0.425
chr4	147106589	147106710	reg1011183.p1	5.093	+	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	-9782	+	BC033879 TSC_hg19_v1_chr4_-_146859976	-246681	-	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	-246972	-	AM392861 BC146684 CU687734 DQ122860 DQ122861 DQ871036 EU831657 EU831663 EU831740 EU831744 CR936751 BC120970 BC120971 BC127626 BC127627 BC148252 AK291046 BC063471 AL136728 TSC_hg19_v1_chr4_-_147443093 BC023288 AY346324 BC150308 CR933647 NM_001029998 NM_032128	336347	-	TSC_hg19_v1_chr4_+_147560044 AK314982 NM_004575 U06233 BC136344 BC136345	453442	+	AK301807 BC024193 AK093145 AX747953 AK225725 AF345910 AK314066 NM_031956	760349	-	NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##AM392861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC146684|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122860|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ122861|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##DQ871036|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831657|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831663|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831740|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##EU831744|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR936751|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120970|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC120971|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127626|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC127627|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC148252|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK291046|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC063471|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AL136728|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC023288|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AY346324|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##BC150308|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##CR933647|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_001029998|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##NM_032128|SLC10A7|84068|solute carrier family 10 (sodium/bile acid cotransporter family), member 7##AK314982|POU4F2|5458|POU class 4 homeobox 2##NM_004575|POU4F2|5458|POU class 4 homeobox 2##U06233|POU4F2|5458|POU class 4 homeobox 2##BC136344|POU4F2|5458|POU class 4 homeobox 2##BC136345|POU4F2|5458|POU class 4 homeobox 2##AK301807|TTC29|83894|tetratricopeptide repeat domain 29##BC024193|TTC29|83894|tetratricopeptide repeat domain 29##AK093145|TTC29|83894|tetratricopeptide repeat domain 29##AK225725|TTC29|83894|tetratricopeptide repeat domain 29##AF345910|TTC29|83894|tetratricopeptide repeat domain 29##AK314066|TTC29|83894|tetratricopeptide repeat domain 29##NM_031956|TTC29|83894|tetratricopeptide repeat domain 29	0.99616	0.0	denovo_WM_7:18:0.438	denovo_WM_7:19:0.438
chr5	114962130	114962310	reg1000359.p2	5.093	+	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	-426	-	TSC_hg19_v1_chr5_-_114961697 AK074962	-528	-	BC109265 BC109266 NM_021649	-24103	-	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	190143	-	BC011033 TSC_hg19_v1_chr5_-_115177263 AB017507 AB590693 EU554057 BC012266 AK313320 NM_004707	215184	-	TSC_hg19_v1_chr5_+_115177642 NM_001284 BX647735 U91932 BC000804 D63643 BC012614 X99458 DQ891198 DQ894381 AK311843 BT009833 CR450341	215455	+	AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I##BC011033|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AB017507|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##EU554057|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##BC012266|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AK313320|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_004707|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_001284|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BX647735|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##U91932|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC000804|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##D63643|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC012614|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##X99458|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ891198|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ894381|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK311843|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BT009833|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##CR450341|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit	0.0	0.0	
chr5	172721043	172721175	reg1010518.p1	5.092	+	AB021133 CU693024 AB464641 DQ893313 DQ894104 DQ896627 BC025711 AK290615 AK307249 AK297844 AK307218 AK309495 U34962 AK307247 NM_001166175 NM_001166176 NM_004387	-58910	-	NM_001205 NM_013978 NM_013979 NM_013980 BC010959 TSC_hg19_v1_chr5_+_172571536 AF083957 AF083958 U15172 AB527856 CU679862 AF083956 AY216799	-149613	+	TSC_hg19_v1_chr5_+_172484383 AK297424	-236726	+	AF031036 BT019591 CR541825 CU674324 EU832632 EU832707 BC006352 BC013958 TSC_hg19_v1_chr5_-_172755285 AF055460 AB012664 AF098462	34153	-	AK075406 TSC_hg19_v1_chr5_-_172755420 BC000658 AK027390 AK027663	34334	-	AK095891 NM_003714	35396	-	AB021133|NKX2-5|1482|NK2 homeobox 5##DQ893313|NKX2-5|1482|NK2 homeobox 5##DQ894104|NKX2-5|1482|NK2 homeobox 5##DQ896627|NKX2-5|1482|NK2 homeobox 5##BC025711|NKX2-5|1482|NK2 homeobox 5##AK290615|NKX2-5|1482|NK2 homeobox 5##AK307249|NKX2-5|1482|NK2 homeobox 5##AK297844|NKX2-5|1482|NK2 homeobox 5##AK307218|NKX2-5|1482|NK2 homeobox 5##AK309495|NKX2-5|1482|NK2 homeobox 5##U34962|NKX2-5|1482|NK2 homeobox 5##AK307247|NKX2-5|1482|NK2 homeobox 5##NM_001166175|NKX2-5|1482|NK2 homeobox 5##NM_001166176|NKX2-5|1482|NK2 homeobox 5##NM_004387|NKX2-5|1482|NK2 homeobox 5##NM_001205|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013978|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013979|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##NM_013980|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##BC010959|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083957|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083958|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##U15172|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AF083956|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AY216799|BNIP1|662|BCL2/adenovirus E1B 19kDa interacting protein 1##AK297424|C5orf41|153222|chromosome 5 open reading frame 41##AF031036|STC2|8614|stanniocalcin 2##BT019591|STC2|8614|stanniocalcin 2##CR541825|STC2|8614|stanniocalcin 2##EU832632|STC2|8614|stanniocalcin 2##EU832707|STC2|8614|stanniocalcin 2##BC006352|STC2|8614|stanniocalcin 2##BC013958|STC2|8614|stanniocalcin 2##AF055460|STC2|8614|stanniocalcin 2##AB012664|STC2|8614|stanniocalcin 2##AF098462|STC2|8614|stanniocalcin 2##AK075406|STC2|8614|stanniocalcin 2##BC000658|STC2|8614|stanniocalcin 2##AK027390|STC2|8614|stanniocalcin 2##AK027663|STC2|8614|stanniocalcin 2##AK095891|STC2|8614|stanniocalcin 2##NM_003714|STC2|8614|stanniocalcin 2	0.0	0.963531	CTCF.p2:11:0.964
chr7	72941535	72941628	reg1006806.p1	5.092	+	TSC_hg19_v1_chr7_-_72936624 AB032253 AF072810 NM_032408	-4966	-	TSC_hg19_v1_chr7_-_72936538 AF084479	-5032	-	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	-5098	-	TSC_hg19_v1_chr7_-_72971945 CU679393 DQ890556 DQ893716 BC001967 AJ223979 X89985 AK290091 BC009548	30352	-	TSC_hg19_v1_chr7_-_72972023 BC000956 NM_001197244 NM_001707	30461	-	TSC_hg19_v1_chr7_-_72992678 AK302265	51138	-	AB032253|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF072810|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##NM_032408|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##DQ890556|BCL7B|9275|B-cell CLL/lymphoma 7B##DQ893716|BCL7B|9275|B-cell CLL/lymphoma 7B##BC001967|BCL7B|9275|B-cell CLL/lymphoma 7B##AJ223979|BCL7B|9275|B-cell CLL/lymphoma 7B##X89985|BCL7B|9275|B-cell CLL/lymphoma 7B##AK290091|BCL7B|9275|B-cell CLL/lymphoma 7B##BC009548|BCL7B|9275|B-cell CLL/lymphoma 7B##BC000956|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001197244|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001707|BCL7B|9275|B-cell CLL/lymphoma 7B##AK302265|TBL2|26608|transducin (beta)-like 2	0.078945	0.0	
chr9	106097816	106097966	reg1009689.p1	5.092	+	BC058038 NM_001340 AK313349 BC114547 Z46788	-340264	+	AB075853 BC167432 NM_133445 TSC_hg19_v1_chr9_-_104500930	-1596990	-	TSC_hg19_v1_chr9_-_104500218 AB385519 AF416558 AJ416950	-1597646	-	TSC_hg19_v1_chr9_+_106856601 AL833191 NM_001042551 NM_006444 BC055081 BC061906 AK307752 AK292599 BC017845 AF092563	758680	+	TSC_hg19_v1_chr9_+_106856625 AY739716 BC130385 BC144163	758762	+	TSC_hg19_v1_chr9_+_106856844 BC071750 NM_001042550 AK001485 BC032705 BC107891	758981	+	BC058038|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##NM_001340|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##AK313349|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##BC114547|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##Z46788|CYLC2|1539|cylicin, basic protein of sperm head cytoskeleton 2##AB075853|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##BC167432|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##NM_133445|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##AF416558|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##AJ416950|GRIN3A|116443|glutamate receptor, ionotropic, N-methyl-D-aspartate 3A##AL833191|SMC2|10592|structural maintenance of chromosomes 2##NM_001042551|SMC2|10592|structural maintenance of chromosomes 2##NM_006444|SMC2|10592|structural maintenance of chromosomes 2##BC055081|SMC2|10592|structural maintenance of chromosomes 2##BC061906|SMC2|10592|structural maintenance of chromosomes 2##AK307752|SMC2|10592|structural maintenance of chromosomes 2##AK292599|SMC2|10592|structural maintenance of chromosomes 2##BC017845|SMC2|10592|structural maintenance of chromosomes 2##AF092563|SMC2|10592|structural maintenance of chromosomes 2##AY739716|SMC2|10592|structural maintenance of chromosomes 2##BC130385|SMC2|10592|structural maintenance of chromosomes 2##BC144163|SMC2|10592|structural maintenance of chromosomes 2##BC071750|SMC2|10592|structural maintenance of chromosomes 2##NM_001042550|SMC2|10592|structural maintenance of chromosomes 2##AK001485|SMC2|10592|structural maintenance of chromosomes 2##BC032705|SMC2|10592|structural maintenance of chromosomes 2##BC107891|SMC2|10592|structural maintenance of chromosomes 2	0.0	0.0	
chr1	111675227	111675380	reg1011084.p1	5.091	+	TSC_hg19_v1_chr1_-_111506545 AY190122 NM_001006945 NM_018372 CR933637	-168752	-	BC040693 TSC_hg19_v1_chr1_+_111415791 M37033 M60871	-259501	+	NM_000560 TSC_hg19_v1_chr1_+_111415769 AK313582 AK298723	-259548	+	BC049196 NM_001007794 AL833102 TSC_hg19_v1_chr1_+_111682370	7006	+	AL833098 TSC_hg19_v1_chr1_-_111682678 AY358492	7381	-	TSC_hg19_v1_chr1_-_111682718 AY336747 BC091509	7428	-	AY190122|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_001006945|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##NM_018372|LRIF1|55791|ligand dependent nuclear receptor interacting factor 1##BC040693|CD53|963|CD53 molecule##M37033|CD53|963|CD53 molecule##M60871|CD53|963|CD53 molecule##NM_000560|CD53|963|CD53 molecule##AK313582|CD53|963|CD53 molecule##AK298723|CD53|963|CD53 molecule##BC049196|CEPT1|10390|choline/ethanolamine phosphotransferase 1##NM_001007794|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833102|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AL833098|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY358492|DRAM2|128338|DNA-damage regulated autophagy modulator 2##AY336747|DRAM2|128338|DNA-damage regulated autophagy modulator 2##BC091509|DRAM2|128338|DNA-damage regulated autophagy modulator 2	0.998993	0.0	denovo_WM_7:8:0.310	denovo_WM_7:9:0.310	denovo_WM_7:10:0.310
chr18	33929653	33929804	reg1008969.p1	5.091	+	TSC_hg19_v1_chr18_+_33877676 AK128053 NM_025135 AB084087 HM191478	-52014	+	TSC_hg19_v1_chr18_+_33767481 NM_017947 AK000740 BC012079 AK222886 DQ895841 EU176372	-162252	+	TSC_hg19_v1_chr18_+_33709886 AK300201 BC032553 AK222791 AK001741 BC007098 AB590856 CU689420 CR457269	-219840	+	TSC_hg19_v1_chr18_-_34408744 AB463512 BC022199 AK000543	479035	-	TSC_hg19_v1_chr18_-_34408937 AK295817 BC015178	479166	-	AB073382 TSC_hg19_v1_chr18_-_34408948	479224	-	AK128053|FHOD3|80206|formin homology 2 domain containing 3##NM_025135|FHOD3|80206|formin homology 2 domain containing 3##AB084087|FHOD3|80206|formin homology 2 domain containing 3##HM191478|FHOD3|80206|formin homology 2 domain containing 3##NM_017947|MOCOS|55034|molybdenum cofactor sulfurase##AK000740|MOCOS|55034|molybdenum cofactor sulfurase##BC012079|MOCOS|55034|molybdenum cofactor sulfurase##AK222886|MOCOS|55034|molybdenum cofactor sulfurase##DQ895841|MOCOS|55034|molybdenum cofactor sulfurase##EU176372|MOCOS|55034|molybdenum cofactor sulfurase##AK300201|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC032553|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK222791|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK001741|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC007098|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##CR457269|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC022199|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK000543|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK295817|TPGS2|25941|tubulin polyglutamylase complex subunit 2##BC015178|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AB073382|TPGS2|25941|tubulin polyglutamylase complex subunit 2	0.979857	0.0	denovo_WM_7:17:0.381	denovo_WM_7:18:0.302	denovo_WM_7:20:0.277
chr3	33436265	33436410	reg1007863.p1	5.091	+	TSC_hg19_v1_chr3_+_33318965 AK001271 NM_012157 AK302218 NM_001171713 AK303764 AK299665 AK294209 AF174589 AK316229 AK001438 AK298967 AK297534 AF186273 BC031556	-117387	+	AB011099 NM_015551	-175631	-	TSC_hg19_v1_chr3_+_33155562 AJ006470 CU679079 DQ893221 DQ896550	-280764	+	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	45199	-	TSC_hg19_v1_chr3_-_33481868 BC047235 NM_001128160 NM_014517	45528	-	TSC_hg19_v1_chr3_-_33481898 AK293100 NM_001128161	45563	-	AK001271|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_012157|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK302218|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_001171713|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK303764|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK299665|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK294209|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF174589|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK316229|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK001438|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK298967|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK297534|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF186273|FBXL2|25827|F-box and leucine-rich repeat protein 2##BC031556|FBXL2|25827|F-box and leucine-rich repeat protein 2##AB011099|SUSD5|26032|sushi domain containing 5##NM_015551|SUSD5|26032|sushi domain containing 5##AJ006470|CRTAP|10491|cartilage associated protein##DQ893221|CRTAP|10491|cartilage associated protein##DQ896550|CRTAP|10491|cartilage associated protein##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)##BC047235|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128160|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_014517|UBP1|7342|upstream binding protein 1 (LBP-1a)##AK293100|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128161|UBP1|7342|upstream binding protein 1 (LBP-1a)	0.991851	0.0	
chr5	42950674	42950830	reg1008877.p1	5.091	+	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-138761	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-193814	+	BC136496 NM_001242460 NM_001242461 NM_001242462	-384788	+	TSC_hg19_v1_chr5_-_42993436 AK056817	42694	-	AB463523 BC067873 AY032883 NM_001014279	89544	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	170249	+	Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC136496|GHR|2690|growth hormone receptor##NM_001242460|GHR|2690|growth hormone receptor##NM_001242461|GHR|2690|growth hormone receptor##NM_001242462|GHR|2690|growth hormone receptor##AK056817|FLJ32255|643977|uncharacterized LOC643977##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131	0.994827	0.0	denovo_WM_7:-12:0.332	denovo_WM_7:-13:0.332	denovo_WM_7:-14:0.332
chr14	93234611	93234791	reg1009159.p1	5.090	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	-19742	-	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-115878	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-116065	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	25985	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	154743	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	154896	+	Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	0.0	0.0	
chr4	10734351	10734481	reg1005913.p2	5.090	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-48015	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-275406	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-615880	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	696116	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2751535	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2751559	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.348235	0.0	
chr6	73092660	73092807	reg1010955.p1	5.090	+	NM_001168411 AK300853	-16276	+	AK308658 NM_001168410	-166271	+	AK309185 NM_001168409	-166589	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	238837	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	239156	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	239328	+	NM_001168411|RIMS1|22999|regulating synaptic membrane exocytosis 1##AK300853|RIMS1|22999|regulating synaptic membrane exocytosis 1##AK308658|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_001168410|RIMS1|22999|regulating synaptic membrane exocytosis 1##AK309185|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_001168409|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5	0.0	0.0	
chr12	867305	867447	reg1004481.p1	5.089	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	-4620	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	-5220	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-94661	-	BC013629 TSC_hg19_v1_chr12_+_1017145	149706	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	191450	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	233076	+	AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1	0.0	0.0	
chr2	236502807	236502965	reg1013456.p1	5.089	+	TSC_hg19_v1_chr2_+_236403297 AB384114 AF413078	-99576	+	TSC_hg19_v1_chr2_+_236402950 BC140856	-99909	+	TSC_hg19_v1_chr2_+_236402701 NM_001037131 NM_001244888 NM_014914 BC060814 BC167157 AB029022 BC167153 AY033765	-100083	+	AK311262 TSC_hg19_v1_chr2_-_237076045	573128	-	AB463673 AF118452 BC114458 BC137448 BC137449 BC141861 BC144646 NM_001485	573746	-	NM_212556 BX647589	670108	-	AF413078|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC140856|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001037131|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_001244888|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##NM_014914|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC060814|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167157|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AB029022|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##BC167153|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AY033765|AGAP1|116987|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1##AF118452|GBX2|2637|gastrulation brain homeobox 2##BC137448|GBX2|2637|gastrulation brain homeobox 2##BC137449|GBX2|2637|gastrulation brain homeobox 2##NM_001485|GBX2|2637|gastrulation brain homeobox 2##NM_212556|ASB18|401036|ankyrin repeat and SOCS box containing 18##BX647589|ASB18|401036|ankyrin repeat and SOCS box containing 18	0.928848	0.995099	CTCF.p2:-2:0.995	denovo_WM_7:55:0.679
chr6	137970268	137970413	reg1006570.p1	5.089	+	BC051352 AK096362 NM_175747	-154815	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-429782	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-429795	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	218197	+	TSC_hg19_v1_chr6_-_138189314 AK124173	219010	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	458228	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	2.726254	0.0	denovo_WM_7:7:0.206	denovo_WM_7:8:0.397	denovo_WM_7:23:0.437	denovo_WM_7:38:0.505
chr7	17973069	17973249	reg1010409.p2	5.089	+	TSC_hg19_v1_chr7_+_17382906 BC021696	-590253	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-634890	+	AY359065 BC058284 NM_176813	-1051555	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	6890	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	6968	-	BC062797 BC005309 M57423 NM_175886	94306	-	BC021696|AHR|196|aryl hydrocarbon receptor##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1	0.997836	0.0	denovo_WM_7:15:0.230	denovo_WM_7:16:0.593
chr9	42856854	42857032	reg1007173.p1	5.089	+	NM_001099279 NM_199244	-139710	+	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	-488585	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-902029	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	276544	-	NM_001145196	773786	-	TSC_hg19_v1_chr9_+_43684876 NM_001201380	827900	+	NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B	0.995856	0.0	
chr11	67211186	67211321	reg1002591.p1	5.088	+	TSC_hg19_v1_chr11_-_67210953 AB209579 AK309267 AK000860 NM_020441	-286	-	TSC_hg19_v1_chr11_-_67210939 BC006449 AK315399 AK295782	-324	-	BC113859 BC114467 AK312022 NM_005608 X81422 TSC_hg19_v1_chr11_-_67205154	-6101	-	NM_001018070	38	-	AY569571 BC119779 BC122869 NM_206997	8946	-	AY039217 NM_145200	11564	+	AK309267|CORO1B|57175|coronin, actin binding protein, 1B##AK000860|CORO1B|57175|coronin, actin binding protein, 1B##NM_020441|CORO1B|57175|coronin, actin binding protein, 1B##BC006449|CORO1B|57175|coronin, actin binding protein, 1B##AK315399|CORO1B|57175|coronin, actin binding protein, 1B##AK295782|CORO1B|57175|coronin, actin binding protein, 1B##BC113859|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##BC114467|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##AK312022|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##NM_005608|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##X81422|PTPRCAP|5790|protein tyrosine phosphatase, receptor type, C-associated protein##NM_001018070|CORO1B|57175|coronin, actin binding protein, 1B##AY569571|GPR152|390212|G protein-coupled receptor 152##BC119779|GPR152|390212|G protein-coupled receptor 152##BC122869|GPR152|390212|G protein-coupled receptor 152##NM_206997|GPR152|390212|G protein-coupled receptor 152##AY039217|CABP4|57010|calcium binding protein 4##NM_145200|CABP4|57010|calcium binding protein 4	0.0	0.0	
chr15	75388072	75388202	reg1006898.p2	5.088	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-72156	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-72209	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-100230	+	AK128205 TSC_hg19_v1_chr15_+_75491259	103109	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	106075	+	BC110367 TSC_hg19_v1_chr15_+_75494233	106096	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.0	0.0	
chr17	8345158	8345338	reg1010805.p2	5.088	+	TSC_hg19_v1_chr17_+_8339211 AK299559 AF217798 AK056014 NM_001025579 NM_030808 BC026101 AF182078 AY004871	-6058	+	NM_001146684	-44105	-	TSC_hg19_v1_chr17_-_8286512 BC071664 AK311804 BC066316 D28413 NM_000987	-58744	-	BC008968 TSC_hg19_v1_chr17_-_8424250	78988	-	TSC_hg19_v1_chr17_-_8534040 M69181 AB210026 BC144668 BC150634 NM_005964 U34304 AB621820	188798	-	BC029224 AK057296 NM_001158261 NM_144681	302880	-	AK299559|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AF217798|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AK056014|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##NM_001025579|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##NM_030808|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##BC026101|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AF182078|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##AY004871|NDEL1|81565|nudE nuclear distribution gene E homolog (A. nidulans)-like 1##NM_001146684|RNF222|643904|ring finger protein 222##BC071664|RPL26|6154|ribosomal protein L26##AK311804|RPL26|6154|ribosomal protein L26##BC066316|RPL26|6154|ribosomal protein L26##NM_000987|RPL26|6154|ribosomal protein L26##BC008968|MYH10|4628|myosin, heavy chain 10, non-muscle##M69181|MYH10|4628|myosin, heavy chain 10, non-muscle##AB210026|MYH10|4628|myosin, heavy chain 10, non-muscle##BC144668|MYH10|4628|myosin, heavy chain 10, non-muscle##BC150634|MYH10|4628|myosin, heavy chain 10, non-muscle##NM_005964|MYH10|4628|myosin, heavy chain 10, non-muscle##U34304|MYH10|4628|myosin, heavy chain 10, non-muscle##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42	0.0	0.0	
chr3	192552440	192552604	reg1008577.p2	5.088	+	AK312513 TSC_hg19_v1_chr3_-_192445344 BC022524 NM_004113	-107157	-	AK125307 NM_021032 TSC_hg19_v1_chr3_-_192126847	-425679	-	AY858112 NM_001083308	-1373571	+	BC013123 TSC_hg19_v1_chr3_-_192635639 AK290447 BX648517	83114	-	BC036194 BC045582 NM_178496	83419	-	TSC_hg19_v1_chr3_+_192958897 BC048095 NM_020386	406382	+	AK312513|FGF12|2257|fibroblast growth factor 12##BC022524|FGF12|2257|fibroblast growth factor 12##NM_004113|FGF12|2257|fibroblast growth factor 12##AK125307|FGF12|2257|fibroblast growth factor 12##NM_021032|FGF12|2257|fibroblast growth factor 12##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2##BC013123|MB21D2|151963|Mab-21 domain containing 2##AK290447|MB21D2|151963|Mab-21 domain containing 2##BX648517|MB21D2|151963|Mab-21 domain containing 2##BC036194|MB21D2|151963|Mab-21 domain containing 2##BC045582|MB21D2|151963|Mab-21 domain containing 2##NM_178496|MB21D2|151963|Mab-21 domain containing 2##BC048095|HRASLS|57110|HRAS-like suppressor##NM_020386|HRASLS|57110|HRAS-like suppressor	0.993303	0.0	
chr5	145562445	145562625	reg1007971.p1	5.088	+	TSC_hg19_v1_chr5_-_145562236 NM_020117	-271	-	TSC_hg19_v1_chr5_-_145562214 AB037773 BC152422	-314	-	TSC_hg19_v1_chr5_-_145562187 BC131798 BC110084 D84223 BC151214 AK304134 BC068041 AK293750 AK025441 AK295874 AF151026 BC105581 AK315178 BC150213	-396	-	AK128738 TSC_hg19_v1_chr5_+_145583122	20582	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	20631	+	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	156095	+	NM_020117|LARS|51520|leucyl-tRNA synthetase##AB037773|LARS|51520|leucyl-tRNA synthetase##BC152422|LARS|51520|leucyl-tRNA synthetase##BC131798|LARS|51520|leucyl-tRNA synthetase##BC110084|LARS|51520|leucyl-tRNA synthetase##D84223|LARS|51520|leucyl-tRNA synthetase##BC151214|LARS|51520|leucyl-tRNA synthetase##AK304134|LARS|51520|leucyl-tRNA synthetase##BC068041|LARS|51520|leucyl-tRNA synthetase##AK293750|LARS|51520|leucyl-tRNA synthetase##AK025441|LARS|51520|leucyl-tRNA synthetase##AK295874|LARS|51520|leucyl-tRNA synthetase##AF151026|LARS|51520|leucyl-tRNA synthetase##BC105581|LARS|51520|leucyl-tRNA synthetase##AK315178|LARS|51520|leucyl-tRNA synthetase##BC150213|LARS|51520|leucyl-tRNA synthetase##AK128738|RBM27|54439|RNA binding motif protein 27##BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3	0.0	0.0	
chr6	17015616	17015792	reg1009587.p2	5.088	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	-254007	-	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-776853	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-872394	+	NM_001190766	86784	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	266150	+	NM_001143941	266590	+	BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24	0.995075	0.0	denovo_WM_7:38:0.890
chr6	71999117	71999214	reg1002810.p1	5.088	+	TSC_hg19_v1_chr6_+_71998514 BC110999	-641	+	TSC_hg19_v1_chr6_+_71998513 BC018688	-655	+	NM_024576 TSC_hg19_v1_chr6_+_71998479	-679	+	AK023251 TSC_hg19_v1_chr6_-_72130545	131335	-	AB045726 AB051866 TSC_hg19_v1_chr6_+_72596447	597263	+	BC151853 AB002338 BC152435 NM_014989 TSC_hg19_v1_chr6_+_72596658	597488	+	BC110999|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##AK023251|LINC00472|79940|long intergenic non-protein coding RNA 472##AB045726|RIMS1|22999|regulating synaptic membrane exocytosis 1##AB051866|RIMS1|22999|regulating synaptic membrane exocytosis 1##BC151853|RIMS1|22999|regulating synaptic membrane exocytosis 1##AB002338|RIMS1|22999|regulating synaptic membrane exocytosis 1##BC152435|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_014989|RIMS1|22999|regulating synaptic membrane exocytosis 1	0.996567	0.0	
chr6_cox_hap2	2686090	2686270	reg1002391.p1	5.088	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr8	125208127	125208262	reg1009204.p1	5.088	+	BC101502 BC101506 AK057332 TSC_hg19_v1_chr8_-_125183771	-24456	-	AB196633 NM_001039112	-343968	+	TSC_hg19_v1_chr8_+_124780758 DQ228141 NM_144963 BC144630	-427381	+	TSC_hg19_v1_chr8_-_125384925 BC041379 NM_194291	176758	-	TSC_hg19_v1_chr8_+_125463060 NM_017956 AK225083 AK000779 AK222727 BC011713 BC003057	254878	+	TSC_hg19_v1_chr8_-_125486793 CR933665	278583	-	BC101502|C8orf78|157376|chromosome 8 open reading frame 78##BC101506|C8orf78|157376|chromosome 8 open reading frame 78##AK057332|C8orf78|157376|chromosome 8 open reading frame 78##AB196633|FER1L6|654463|fer-1-like 6 (C. elegans)##NM_001039112|FER1L6|654463|fer-1-like 6 (C. elegans)##DQ228141|FAM91A1|157769|family with sequence similarity 91, member A1##NM_144963|FAM91A1|157769|family with sequence similarity 91, member A1##BC144630|FAM91A1|157769|family with sequence similarity 91, member A1##BC041379|TMEM65|157378|transmembrane protein 65##NM_194291|TMEM65|157378|transmembrane protein 65##NM_017956|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##AK225083|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##AK000779|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##AK222727|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##BC011713|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)##BC003057|TRMT12|55039|tRNA methyltransferase 12 homolog (S. cerevisiae)	0.999365	0.0	
chr9	114756239	114756341	reg1011802.p2	5.088	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-96823	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-97176	+	AL833535 NM_173521	-210515	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	181230	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	338997	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	339559	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.995728	0.0	
chr9	15642481	15642618	reg1007464.p1	5.088	+	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	-89528	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-131589	-	AF098483 AF098482 NM_021144	-132302	-	TSC_hg19_v1_chr9_-_16727889 AY438376	1085348	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	1228118	-	TSC_hg19_v1_chr9_-_16870747 CR933649 AK299073 NM_017637	1228217	-	AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AY438376|BNC2|54796|basonuclin 2##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2##CR933649|BNC2|54796|basonuclin 2##AK299073|BNC2|54796|basonuclin 2##NM_017637|BNC2|54796|basonuclin 2	0.0	0.840511	CTCF.p2:-6:0.841
chr8	8021862	8022034	reg1011421.p1	5.087	+	AK292586 NM_001193630	-238090	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-269744	+	AF295370 AJ237673 NM_018661 AB037972 AB590071 AF217245 AF516673	-283023	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	64194	+	TSC_hg19_v1_chr8_-_8175862 AF075060	153940	-	AK122582 NM_001080826	217274	-	AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF295370|DEFB103B|55894|defensin, beta 103B##AJ237673|DEFB103B|55894|defensin, beta 103B##NM_018661|DEFB103B|55894|defensin, beta 103B##AB037972|DEFB103B|55894|defensin, beta 103B##AF217245|DEFB103B|55894|defensin, beta 103B##AF516673|DEFB103B|55894|defensin, beta 103B##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2	1.680138	0.0	denovo_WM_7:95:0.583
chr13	24007844	24007950	reg1006411.p2	5.086	+	TSC_hg19_v1_chr13_-_24007842 NM_014363	-57	-	TSC_hg19_v1_chr13_-_23949652 AK125458	-58247	-	NM_000231 U34976 BC109321 AK290620 AK316579 BC074777 BC074778	-252782	+	TSC_hg19_v1_chr13_+_24144402 NM_001204459 NM_148957	136558	+	TSC_hg19_v1_chr13_+_24153521 BC035796 NM_001204458 NM_018647 AY358888 AF167555	145635	+	TSC_hg19_v1_chr13_+_24463019 BC015452 BC073902 NM_001014442	455119	+	NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##AK125458|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##NM_000231|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##U34976|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC109321|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK290620|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK316579|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074777|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074778|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##NM_001204459|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_148957|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##BC035796|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_001204458|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##NM_018647|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AY358888|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##AF167555|TNFRSF19|55504|tumor necrosis factor receptor superfamily, member 19##BC015452|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC073902|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##NM_001014442|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)	0.931918	0.017553	denovo_WM_7:1:0.327	denovo_WM_7:2:0.605
chr13	39489714	39489810	reg1011546.p1	5.086	+	NM_207361	-228590	+	TSC_hg19_v1_chr13_+_38923995 AK095490 AK307111 BC005193 Z70222 AF208844 AK309914 AB154404 CR457189	-565713	+	NM_016617 TSC_hg19_v1_chr13_+_38923946	-565811	+	DQ891676 EU176604 AK313632 BC025760 AK304159 NM_001144033 NM_145286	75164	-	TSC_hg19_v1_chr13_-_39612201 AK074360 AB107354	122439	-	TSC_hg19_v1_chr13_-_39612251 NM_025138 NM_170719	122491	-	NM_207361|FREM2|341640|FRAS1 related extracellular matrix protein 2##AK095490|UFM1|51569|ubiquitin-fold modifier 1##AK307111|UFM1|51569|ubiquitin-fold modifier 1##BC005193|UFM1|51569|ubiquitin-fold modifier 1##Z70222|UFM1|51569|ubiquitin-fold modifier 1##AF208844|UFM1|51569|ubiquitin-fold modifier 1##AK309914|UFM1|51569|ubiquitin-fold modifier 1##AB154404|UFM1|51569|ubiquitin-fold modifier 1##CR457189|UFM1|51569|ubiquitin-fold modifier 1##NM_016617|UFM1|51569|ubiquitin-fold modifier 1##DQ891676|STOML3|161003|stomatin (EPB72)-like 3##EU176604|STOML3|161003|stomatin (EPB72)-like 3##AK313632|STOML3|161003|stomatin (EPB72)-like 3##BC025760|STOML3|161003|stomatin (EPB72)-like 3##AK304159|STOML3|161003|stomatin (EPB72)-like 3##NM_001144033|STOML3|161003|stomatin (EPB72)-like 3##NM_145286|STOML3|161003|stomatin (EPB72)-like 3##AK074360|PROSER1|80209|proline and serine rich 1##AB107354|PROSER1|80209|proline and serine rich 1##NM_025138|PROSER1|80209|proline and serine rich 1##NM_170719|PROSER1|80209|proline and serine rich 1	1.058051	0.964365	CTCF.p2:6:0.964	denovo_WM_7:97:0.777
chr13	46271120	46271224	reg1008015.p1	5.086	+	BC131494 AK057244 NM_182542	-81307	-	TSC_hg19_v1_chr13_+_46039081 NM_031431 AF349676 AF332595 AK026305 AK225466 AK225952 BX648211 AK294959 AK304248 AK314387 BC038953 CU691622	-232075	+	TSC_hg19_v1_chr13_-_45992486 BC132739 BC136760 BC144401 AK094133 AK095465 AK302967 NM_001010875	-278678	-	AK093129 AX747942 NM_152719	5273	+	AK096522 AB463764 BC041372 NM_198849	154628	-	BC019000 TSC_hg19_v1_chr13_-_46626864 AK056422 AY283618 NM_015070	355711	-	BC131494|FAM194B|220081|family with sequence similarity 194, member B##AK057244|FAM194B|220081|family with sequence similarity 194, member B##NM_182542|FAM194B|220081|family with sequence similarity 194, member B##NM_031431|COG3|83548|component of oligomeric golgi complex 3##AF349676|COG3|83548|component of oligomeric golgi complex 3##AF332595|COG3|83548|component of oligomeric golgi complex 3##AK026305|COG3|83548|component of oligomeric golgi complex 3##AK225466|COG3|83548|component of oligomeric golgi complex 3##AK225952|COG3|83548|component of oligomeric golgi complex 3##BX648211|COG3|83548|component of oligomeric golgi complex 3##AK294959|COG3|83548|component of oligomeric golgi complex 3##AK304248|COG3|83548|component of oligomeric golgi complex 3##AK314387|COG3|83548|component of oligomeric golgi complex 3##BC038953|COG3|83548|component of oligomeric golgi complex 3##BC132739|SLC25A30|253512|solute carrier family 25, member 30##BC136760|SLC25A30|253512|solute carrier family 25, member 30##BC144401|SLC25A30|253512|solute carrier family 25, member 30##AK094133|SLC25A30|253512|solute carrier family 25, member 30##AK095465|SLC25A30|253512|solute carrier family 25, member 30##AK302967|SLC25A30|253512|solute carrier family 25, member 30##NM_001010875|SLC25A30|253512|solute carrier family 25, member 30##AK093129|SPERT|220082|spermatid associated##NM_152719|SPERT|220082|spermatid associated##BC041372|SIAH3|283514|seven in absentia homolog 3 (Drosophila)##NM_198849|SIAH3|283514|seven in absentia homolog 3 (Drosophila)##BC019000|ZC3H13|23091|zinc finger CCCH-type containing 13##AK056422|ZC3H13|23091|zinc finger CCCH-type containing 13##AY283618|ZC3H13|23091|zinc finger CCCH-type containing 13##NM_015070|ZC3H13|23091|zinc finger CCCH-type containing 13	0.073803	0.0	
chr18	76831258	76831438	reg1007437.p1	5.086	+	TSC_hg19_v1_chr18_+_76829420 BC053561	-1899	+	BC036473 TSC_hg19_v1_chr18_+_76829395 AK308291 BC022535 BC125219 BC125220 NM_198531 AK093704 AX748269 AK295981	-1949	+	BC129827 BC148296 NM_171999	-91074	+	TSC_hg19_v1_chr18_+_76856487 CU690988	25151	+	TSC_hg19_v1_chr18_+_77155750 NM_006162 NM_172388 NM_172390 U80917	324465	+	TSC_hg19_v1_chr18_+_77155929 AK292641	324585	+	BC053561|ATP9B|374868|ATPase, class II, type 9B##BC036473|ATP9B|374868|ATPase, class II, type 9B##AK308291|ATP9B|374868|ATPase, class II, type 9B##BC022535|ATP9B|374868|ATPase, class II, type 9B##BC125219|ATP9B|374868|ATPase, class II, type 9B##BC125220|ATP9B|374868|ATPase, class II, type 9B##NM_198531|ATP9B|374868|ATPase, class II, type 9B##AK093704|ATP9B|374868|ATPase, class II, type 9B##AK295981|ATP9B|374868|ATPase, class II, type 9B##BC148296|SALL3|27164|sal-like 3 (Drosophila)##NM_171999|SALL3|27164|sal-like 3 (Drosophila)##NM_006162|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172388|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172390|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80917|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK292641|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	1.009627	0.0	denovo_WM_7:58:0.951
chr3	196183196	196183320	reg1004959.p1	5.086	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-23925	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-23959	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-23975	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	47320	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	58955	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	112132	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	2.860259	0.0	denovo_WM_7:13:0.309	denovo_WM_7:14:0.309	denovo_WM_7:15:0.309	denovo_WM_7:-47:0.818	denovo_WM_7:-62:0.838
chr5	95170358	95170440	reg1005527.p2	5.086	+	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	-11879	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	-11999	-	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-102863	+	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	127099	-	TSC_hg19_v1_chr5_-_95297609 BC028412 NM_012081	127286	-	AK308575 NM_001177876	578289	-	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2##BC028412|ELL2|22936|elongation factor, RNA polymerase II, 2##NM_012081|ELL2|22936|elongation factor, RNA polymerase II, 2##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1	0.983638	0.0	denovo_WM_7:-4:0.484
chr1	17467914	17468012	reg1007027.p1	5.085	+	AB587350 AB023211 AB030176 BC009701 TSC_hg19_v1_chr1_-_17445947 AK295783 NM_007365	-22056	-	DQ403007 TSC_hg19_v1_chr1_-_17380528 AK312056 U17248 BC007840 NM_003000	-87388	-	AL354615 AY461712 TSC_hg19_v1_chr1_-_17338424 BC030267 AK290210 NM_001141973 NM_001141974 NM_022089	-129580	-	AK314644 AK026652 AK225541 NM_013358 AB033768 BC130574 BC136402 HQ258487	63702	+	AB026831 NM_016233 BC109091 BC041592 BC109092	107636	+	AF229067 AK314839 NM_012387 AB017919 AK290507 AK309637 BC025718 AB527709 CU693030	166740	+	AB023211|PADI2|11240|peptidyl arginine deiminase, type II##AB030176|PADI2|11240|peptidyl arginine deiminase, type II##BC009701|PADI2|11240|peptidyl arginine deiminase, type II##AK295783|PADI2|11240|peptidyl arginine deiminase, type II##NM_007365|PADI2|11240|peptidyl arginine deiminase, type II##DQ403007|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AK312056|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##U17248|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##BC007840|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##NM_003000|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AL354615|ATP13A2|23400|ATPase type 13A2##AY461712|ATP13A2|23400|ATPase type 13A2##BC030267|ATP13A2|23400|ATPase type 13A2##AK290210|ATP13A2|23400|ATPase type 13A2##NM_001141973|ATP13A2|23400|ATPase type 13A2##NM_001141974|ATP13A2|23400|ATPase type 13A2##NM_022089|ATP13A2|23400|ATPase type 13A2##AK314644|PADI1|29943|peptidyl arginine deiminase, type I##AK026652|PADI1|29943|peptidyl arginine deiminase, type I##AK225541|PADI1|29943|peptidyl arginine deiminase, type I##NM_013358|PADI1|29943|peptidyl arginine deiminase, type I##AB033768|PADI1|29943|peptidyl arginine deiminase, type I##BC130574|PADI1|29943|peptidyl arginine deiminase, type I##BC136402|PADI1|29943|peptidyl arginine deiminase, type I##HQ258487|PADI1|29943|peptidyl arginine deiminase, type I##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III##AF229067|PADI4|23569|peptidyl arginine deiminase, type IV##AK314839|PADI4|23569|peptidyl arginine deiminase, type IV##NM_012387|PADI4|23569|peptidyl arginine deiminase, type IV##AB017919|PADI4|23569|peptidyl arginine deiminase, type IV##AK290507|PADI4|23569|peptidyl arginine deiminase, type IV##AK309637|PADI4|23569|peptidyl arginine deiminase, type IV##BC025718|PADI4|23569|peptidyl arginine deiminase, type IV	0.748331	0.0	denovo_WM_7:-12:0.598
chr12	105720426	105720557	reg1010508.p2	5.085	+	CU689714 AB527678 DQ892107 DQ895301 TSC_hg19_v1_chr12_-_105629989 AK001521 AK290562 AK297100 BC033731 BC028008 AY113704 NM_001251904 NM_018171	-90581	-	NM_001251905	-93309	-	TSC_hg19_v1_chr12_+_105501556 AB385420	-218924	+	TSC_hg19_v1_chr12_+_105724468 BC013920 NM_001145199 BC067897 BC045812 BC061920 AK056999 AJ311377	3980	+	AJ311378 TSC_hg19_v1_chr12_+_105724640	4148	+	TSC_hg19_v1_chr12_-_106532646 AK289992 AK027302	812191	-	DQ892107|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ895301|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK001521|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK290562|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK297100|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC033731|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC028008|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AY113704|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251904|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_018171|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251905|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC013920|C12orf75|387882|chromosome 12 open reading frame 75##NM_001145199|C12orf75|387882|chromosome 12 open reading frame 75##BC067897|C12orf75|387882|chromosome 12 open reading frame 75##BC045812|C12orf75|387882|chromosome 12 open reading frame 75##BC061920|C12orf75|387882|chromosome 12 open reading frame 75##AK056999|C12orf75|387882|chromosome 12 open reading frame 75##AJ311377|C12orf75|387882|chromosome 12 open reading frame 75##AJ311378|C12orf75|387882|chromosome 12 open reading frame 75##AK289992|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK027302|NUAK1|9891|NUAK family, SNF1-like kinase, 1	1.014738	0.0	
chr12	123825121	123825218	reg1007595.p1	5.085	+	DQ891281 DQ894468 BC034717 TSC_hg19_v1_chr12_-_123756363 AB006077 AF006484 NM_004642	-68676	-	NM_001143905	-106879	+	NM_152269 TSC_hg19_v1_chr12_+_123717982 BC020885 BC062329 AF061733 AK025908 NM_001194995 BC018145	-107219	+	AY364255 AB014772 BC129949 BC133704 NM_001167856 NM_018183	9816	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	24224	-	AK122703 TSC_hg19_v1_chr12_-_123849766	24596	-	DQ891281|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##DQ894468|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##BC034717|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AB006077|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AF006484|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##NM_004642|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##NM_001143905|C12orf65|91574|chromosome 12 open reading frame 65##NM_152269|C12orf65|91574|chromosome 12 open reading frame 65##BC020885|C12orf65|91574|chromosome 12 open reading frame 65##BC062329|C12orf65|91574|chromosome 12 open reading frame 65##AF061733|C12orf65|91574|chromosome 12 open reading frame 65##AK025908|C12orf65|91574|chromosome 12 open reading frame 65##NM_001194995|C12orf65|91574|chromosome 12 open reading frame 65##BC018145|C12orf65|91574|chromosome 12 open reading frame 65##AY364255|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AB014772|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC129949|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC133704|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_001167856|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_018183|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK122703|SBNO1|55206|strawberry notch homolog 1 (Drosophila)	1.010522	0.0	
chr16	79123821	79123931	reg1009468.p1	5.085	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-990421	+	NM_001244755	-1060891	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-1067426	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	510739	-	AF125108 NM_130897 BC054892 BC035232	1451012	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1714171	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	0.98491	0.0	denovo_WM_7:-10:0.489	denovo_WM_7:-11:0.255	denovo_WM_7:-12:0.227
chr17	70001145	70001325	reg1000706.p2	5.085	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1835539	+	BC033038 NM_170742	-1900241	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1929805	+	TSC_hg19_v1_chr17_-_70116937 AL833139	115703	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	115924	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	115935	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.0	0.0	
chr6	99933016	99933163	reg1002255.p4	5.085	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	-59922	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	-60275	+	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	-83798	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	30180	-	TSC_hg19_v1_chr6_-_99963309 BC005991	30221	-	TSC_hg19_v1_chr6_+_99968921 BX647075 NM_001195131	35810	+	BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45##BC005991|USP45|85015|ubiquitin specific peptidase 45##BX647075|LOC100130890|100130890|uncharacterized LOC100130890##NM_001195131|LOC100130890|100130890|uncharacterized LOC100130890	0.995322	0.0	
chrX	109333345	109333482	reg1007593.p1	5.085	+	TSC_hg19_v1_chrX_+_109246360 BC085605	-87058	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	-87073	+	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	-87543	+	CU687440 TSC_hg19_v1_chrX_-_109561311 AK314596 BC060813	227892	-	TSC_hg19_v1_chrX_-_109561314 BX648797 NM_001025580 NM_015365	227933	-	TSC_hg19_v1_chrX_-_109561428 AJ007014	228033	-	BC085605|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##AK314596|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BC060813|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BX648797|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_001025580|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_015365|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##AJ007014|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	0.992995	0.0	denovo_WM_7:84:0.667
chr1	15851825	15851985	reg1006492.p1	5.084	+	TSC_hg19_v1_chr1_-_15850843 BC006463 AB209147 NM_001229 AK303743 NM_032996	-875	-	TSC_hg19_v1_chr1_-_15850729 U60521	-1159	-	TSC_hg19_v1_chr1_-_15850711 AB020979 AF093130 AF110376 AJ781267 AY732490 BT006911 CU675417 DQ891693 U56390 AB590140 BC002452 AK292080 AB015653 AK292111	-1202	-	BC047363 TSC_hg19_v1_chr1_+_15853342	1420	+	TSC_hg19_v1_chr1_+_15853357 AK091848 AX747219 AB023179 NM_015291 CR749259 CR749567 AL833299 AK292479 BX648982	1460	+	DQ893530 DQ896746 TSC_hg19_v1_chr1_-_15911519 AY057097 AK027037 AK130034 AK225366 BC005090 NM_024758	59635	-	BC006463|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AB209147|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##NM_001229|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AK303743|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##NM_032996|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##U60521|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AB020979|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AF093130|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AF110376|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AJ781267|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AY732490|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##BT006911|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##DQ891693|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##U56390|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##BC002452|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AK292080|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AB015653|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##AK292111|CASP9|842|caspase 9, apoptosis-related cysteine peptidase##BC047363|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK091848|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AB023179|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##NM_015291|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749259|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749567|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AL833299|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK292479|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BX648982|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##DQ893530|AGMAT|79814|agmatine ureohydrolase (agmatinase)##DQ896746|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AY057097|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK130034|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK225366|AGMAT|79814|agmatine ureohydrolase (agmatinase)##BC005090|AGMAT|79814|agmatine ureohydrolase (agmatinase)##NM_024758|AGMAT|79814|agmatine ureohydrolase (agmatinase)	0.0	0.0	
chr1	199142728	199142837	reg1005039.p2	5.084	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-236235	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-534452	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-534557	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	854087	+	AK316513 TSC_hg19_v1_chr1_+_200011716	868942	+	NM_001105517	1039873	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.0	0.0	
chr1	154957379	154957557	reg1009878.p2	5.083	+	BC011378 TSC_hg19_v1_chr1_+_154955840 AK025979 AF218022 AF520568 BC021096	-1621	+	NM_001184891 NM_001184892 NM_025207 NM_201398 TSC_hg19_v1_chr1_+_154955827 AK090542 AX746501 BC032323 AK308243	-1665	+	TSC_hg19_v1_chr1_+_154947168 AK307066 BC007751 AF274941 AF279897 BC015629 X54941 AB590248 DQ890700 DQ892972 DQ893884 DQ895958 EU176486 EU176487 BT007196 AF274943	-10237	+	AF268478 BC069140 NM_018655 BC096714 BC098148 BC098246 BC098253 AB451457	8604	+	TSC_hg19_v1_chr1_+_154975120 NM_001252405 NM_015872 AK291619 CR749303 BC012070	17618	+	NM_001252406 TSC_hg19_v1_chr1_+_154975235 AK304762	17779	+	BC011378|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK025979|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF218022|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF520568|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC021096|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_001184891|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_001184892|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_025207|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_201398|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK090542|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC032323|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK308243|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK307066|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC007751|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF274941|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF279897|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BC015629|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##X54941|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ890700|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ892972|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ893884|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##DQ895958|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##EU176486|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##EU176487|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##BT007196|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF274943|CKS1B|1163|CDC28 protein kinase regulatory subunit 1B##AF268478|LENEP|55891|lens epithelial protein##BC069140|LENEP|55891|lens epithelial protein##NM_018655|LENEP|55891|lens epithelial protein##BC096714|LENEP|55891|lens epithelial protein##BC098148|LENEP|55891|lens epithelial protein##BC098246|LENEP|55891|lens epithelial protein##BC098253|LENEP|55891|lens epithelial protein##AB451457|LENEP|55891|lens epithelial protein##NM_001252405|ZBTB7B|51043|zinc finger and BTB domain containing 7B##NM_015872|ZBTB7B|51043|zinc finger and BTB domain containing 7B##AK291619|ZBTB7B|51043|zinc finger and BTB domain containing 7B##CR749303|ZBTB7B|51043|zinc finger and BTB domain containing 7B##BC012070|ZBTB7B|51043|zinc finger and BTB domain containing 7B##NM_001252406|ZBTB7B|51043|zinc finger and BTB domain containing 7B##AK304762|ZBTB7B|51043|zinc finger and BTB domain containing 7B	1.988566	0.0	denovo_WM_7:47:0.388	denovo_WM_7:48:0.293	denovo_WM_7:64:0.288	denovo_WM_7:65:0.383
chr1	26920009	26920136	reg1009987.p1	5.083	+	AK292722 NM_001006665 TSC_hg19_v1_chr1_+_26872346	-47714	+	TSC_hg19_v1_chr1_+_26872335 AK092955	-47749	+	TSC_hg19_v1_chr1_+_26856259 BC014966 AK315730 L07597 AB385042 DQ892242 DQ895443	-63737	+	NM_006015 NM_139135 AF231056	102450	+	AB210022 AF219114 AB051293 AF265208 TSC_hg19_v1_chr1_+_27024003	103897	+	TSC_hg19_v1_chr1_+_27101218 AK074940 AK308363	181216	+	AK292722|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##NM_001006665|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##AK092955|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##BC014966|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##AK315730|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##L07597|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##DQ892242|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##DQ895443|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##NM_006015|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_139135|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF231056|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AB210022|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF219114|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF265208|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK074940|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK308363|ARID1A|8289|AT rich interactive domain 1A (SWI-like)	1.88829	0.0	denovo_WM_7:-26:0.895	denovo_WM_7:42:0.421	denovo_WM_7:44:0.455
chr17	35806306	35806426	reg1002656.p2	5.082	+	AK022767 NM_001488 NM_133439	-39055	+	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	-39404	+	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	-39491	-	NM_007026 TSC_hg19_v1_chr17_+_35849956	43594	+	TSC_hg19_v1_chr17_+_35849996 AK314894	43623	+	TSC_hg19_v1_chr17_+_35849998 BC001894 AF038844 BC000370 BC004448	43649	+	AK022767|TADA2A|6871|transcriptional adaptor 2A##NM_001488|TADA2A|6871|transcriptional adaptor 2A##NM_133439|TADA2A|6871|transcriptional adaptor 2A##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_007026|DUSP14|11072|dual specificity phosphatase 14##AK314894|DUSP14|11072|dual specificity phosphatase 14##BC001894|DUSP14|11072|dual specificity phosphatase 14##AF038844|DUSP14|11072|dual specificity phosphatase 14##BC000370|DUSP14|11072|dual specificity phosphatase 14##BC004448|DUSP14|11072|dual specificity phosphatase 14	0.0	0.0	
chr2	155340961	155341059	reg1009964.p1	5.082	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-612566	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1005759	-	BC070140 TSC_hg19_v1_chr2_+_153575135 AF530059	-1765866	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	214179	+	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1845680	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1848153	-	NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC070140|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AF530059|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2	0.0	0.0	
chr16	73912644	73912769	reg1010084.p2	5.081	+	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	-820120	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	-830485	-	TSC_hg19_v1_chr16_-_72991733 BC029653	-921001	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	417987	+	TSC_hg19_v1_chr16_+_74330732 D50063 AB528643 CU680372	418065	+	TSC_hg19_v1_chr16_-_74401811 AK124154	489106	-	D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##BC029653|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##D50063|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.423284	0.898863	CTCF.p2:18:0.899	denovo_WM_7:-43:0.369
chr9	136241600	136241696	reg1005779.p1	5.081	+	TSC_hg19_v1_chr9_+_136223420 NM_017503 BC014411 Z35094 DQ892595 DQ895819 CR456753	-18200	+	Z35093 TSC_hg19_v1_chr9_-_136223345 AK291122 BC028314 BC071658 NM_003172	-18294	-	CU687126 DQ890823 DQ893977 TSC_hg19_v1_chr9_-_136223336	-18315	-	Y14820 CU676306 AM392907 DQ892024 DQ895216 AB528538 BC018741 AK293434 BX647961 TSC_hg19_v1_chr9_-_136242890 BC111023	1216	-	TSC_hg19_v1_chr9_-_136242925 AK300004 AK299656 AK303309 AK316480	1280	-	AK295435 TSC_hg19_v1_chr9_-_136242933	1285	-	NM_017503|SURF2|6835|surfeit 2##BC014411|SURF2|6835|surfeit 2##Z35094|SURF2|6835|surfeit 2##DQ892595|SURF2|6835|surfeit 2##DQ895819|SURF2|6835|surfeit 2##CR456753|SURF2|6835|surfeit 2##Z35093|SURF1|6834|surfeit 1##AK291122|SURF1|6834|surfeit 1##BC028314|SURF1|6834|surfeit 1##BC071658|SURF1|6834|surfeit 1##NM_003172|SURF1|6834|surfeit 1##DQ890823|SURF1|6834|surfeit 1##DQ893977|SURF1|6834|surfeit 1##Y14820|SURF4|6836|surfeit 4##AM392907|SURF4|6836|surfeit 4##DQ892024|SURF4|6836|surfeit 4##DQ895216|SURF4|6836|surfeit 4##BC018741|SURF4|6836|surfeit 4##AK293434|SURF4|6836|surfeit 4##BX647961|SURF4|6836|surfeit 4##BC111023|SURF4|6836|surfeit 4##AK300004|SURF4|6836|surfeit 4##AK299656|SURF4|6836|surfeit 4##AK303309|SURF4|6836|surfeit 4##AK316480|SURF4|6836|surfeit 4##AK295435|SURF4|6836|surfeit 4	0.984976	0.0	denovo_WM_7:31:0.985
chr11	82998719	82998862	reg1007127.p1	5.080	+	AF271782 NM_021825 BC048795 TSC_hg19_v1_chr11_-_82997434 AK304769 AK315787 BC107755	-1385	-	TSC_hg19_v1_chr11_-_82997032 AB528098 AM393290 AM393494 CU676716 BC067764 AF182412 AF182424 AK055972 BC020783 AK225726 AK292349 BC017771 BC032701 BC014573 AL136791	-1757	-	BX648690 NM_182603 DQ508815 AK095193 BC171752	-93302	+	AK299778 CR933674 NM_001142702	394661	-	AK294375 AK126776 AK295624 NM_001142700	985486	-	AK127150 NM_001206769 TSC_hg19_v1_chr11_-_84028381	1029591	-	AF271782|CCDC90B|60492|coiled-coil domain containing 90B##NM_021825|CCDC90B|60492|coiled-coil domain containing 90B##BC048795|CCDC90B|60492|coiled-coil domain containing 90B##AK304769|CCDC90B|60492|coiled-coil domain containing 90B##AK315787|CCDC90B|60492|coiled-coil domain containing 90B##BC107755|CCDC90B|60492|coiled-coil domain containing 90B##BC067764|CCDC90B|60492|coiled-coil domain containing 90B##AF182412|CCDC90B|60492|coiled-coil domain containing 90B##AF182424|CCDC90B|60492|coiled-coil domain containing 90B##AK055972|CCDC90B|60492|coiled-coil domain containing 90B##BC020783|CCDC90B|60492|coiled-coil domain containing 90B##AK225726|CCDC90B|60492|coiled-coil domain containing 90B##BC017771|CCDC90B|60492|coiled-coil domain containing 90B##BC032701|CCDC90B|60492|coiled-coil domain containing 90B##BC014573|CCDC90B|60492|coiled-coil domain containing 90B##AL136791|CCDC90B|60492|coiled-coil domain containing 90B##BX648690|ANKRD42|338699|ankyrin repeat domain 42##NM_182603|ANKRD42|338699|ankyrin repeat domain 42##DQ508815|ANKRD42|338699|ankyrin repeat domain 42##AK095193|ANKRD42|338699|ankyrin repeat domain 42##BC171752|ANKRD42|338699|ankyrin repeat domain 42##AK299778|DLG2|1740|discs, large homolog 2 (Drosophila)##CR933674|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142702|DLG2|1740|discs, large homolog 2 (Drosophila)##AK294375|DLG2|1740|discs, large homolog 2 (Drosophila)##AK126776|DLG2|1740|discs, large homolog 2 (Drosophila)##AK295624|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142700|DLG2|1740|discs, large homolog 2 (Drosophila)##AK127150|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001206769|DLG2|1740|discs, large homolog 2 (Drosophila)	0.995584	0.0	
chr12	113612267	113612395	reg1008442.p1	5.080	+	AK308987 NM_001144872	-24727	+	AF086713 AB208935 AK294350 NM_001193520 NM_004658	-38300	-	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	-38919	-	BC005848 BC001132 BC001848 AY148094 TSC_hg19_v1_chr12_-_113623279 AF478457 NM_001111322 NM_024072	10916	-	AK075358 AK123762 AK027741 TSC_hg19_v1_chr12_+_113623525 AY007158 AK027733 NM_032848 AK222908	11142	+	TSC_hg19_v1_chr12_-_113658844 BC013151 NM_138451 AK127152	46531	-	NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC005848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001132|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AY148094|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AF478457|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001111322|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_024072|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AK075358|C12orf52|84934|chromosome 12 open reading frame 52##AK123762|C12orf52|84934|chromosome 12 open reading frame 52##AK027741|C12orf52|84934|chromosome 12 open reading frame 52##AY007158|C12orf52|84934|chromosome 12 open reading frame 52##AK027733|C12orf52|84934|chromosome 12 open reading frame 52##NM_032848|C12orf52|84934|chromosome 12 open reading frame 52##AK222908|C12orf52|84934|chromosome 12 open reading frame 52##BC013151|IQCD|115811|IQ motif containing D##NM_138451|IQCD|115811|IQ motif containing D##AK127152|IQCD|115811|IQ motif containing D	0.904979	0.956273	denovo_WM_7:-31:0.235	denovo_WM_7:-32:0.291	CTCF.p2:39:0.956
chr1	31217096	31217198	reg1000913.p2	5.080	+	TSC_hg19_v1_chr1_-_31196436 AK312949 NM_002379 AK075519	-20715	-	TSC_hg19_v1_chr1_+_31191648 AK057725	-25516	+	TSC_hg19_v1_chr1_+_29563016 NM_001195001 NM_005704 NM_133177 NM_133178 X97198 U73727 BC146655 X95712 U71075	-1654099	+	AB383742 TSC_hg19_v1_chr1_-_31230622 D42042 U30498 AK297014 AK307303 AK292009 BC106896 BC106897 U51240	13485	-	TSC_hg19_v1_chr1_-_31230697 NM_006762	13543	-	TSC_hg19_v1_chr1_-_31345363 AL049426	128251	-	AK312949|MATN1|4146|matrilin 1, cartilage matrix protein##NM_002379|MATN1|4146|matrilin 1, cartilage matrix protein##AK075519|MATN1|4146|matrilin 1, cartilage matrix protein##AK057725|LOC100129196|100129196|uncharacterized LOC100129196##NM_001195001|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_005704|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133177|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133178|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X97198|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U73727|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##BC146655|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X95712|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U71075|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##D42042|LAPTM5|7805|lysosomal protein transmembrane 5##U30498|LAPTM5|7805|lysosomal protein transmembrane 5##AK297014|LAPTM5|7805|lysosomal protein transmembrane 5##AK292009|LAPTM5|7805|lysosomal protein transmembrane 5##BC106896|LAPTM5|7805|lysosomal protein transmembrane 5##BC106897|LAPTM5|7805|lysosomal protein transmembrane 5##U51240|LAPTM5|7805|lysosomal protein transmembrane 5##NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##AL049426|SDC3|9672|syndecan 3	0.0	0.0	
chr1	35835661	35835786	reg1006711.p1	5.080	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-101095	+	TSC_hg19_v1_chr1_+_35734567 AK308320 NM_005095	-101161	+	NM_005066 TSC_hg19_v1_chr1_-_35658747 BC051192	-176978	-	BX648067 TSC_hg19_v1_chr1_+_35851133	15394	+	TSC_hg19_v1_chr1_-_35920081 AK090878	84435	-	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	187246	-	BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##AK308320|ZMYM4|9202|zinc finger, MYM-type 4##NM_005095|ZMYM4|9202|zinc finger, MYM-type 4##NM_005066|SFPQ|6421|splicing factor proline/glutamine-rich##BC051192|SFPQ|6421|splicing factor proline/glutamine-rich##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##AK090878|KIAA0319L|79932|KIAA0319-like##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like	0.347606	0.0	denovo_WM_7:-104:0.335
chr2	172000053	172000160	reg1009328.p1	5.080	+	AK301857 NM_001136555	-76624	-	TSC_hg19_v1_chr2_+_171785781 AK298020 BC007770 BC001408 AK296698 AK027349 AB528359 DQ892715 DQ895965 CU675801	-214292	+	TSC_hg19_v1_chr2_+_171785776 AK315508 AK023201 AK225810 AK293640 AK023082	-214405	+	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	16990	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	17393	-	AK090779 NM_001136554	87717	-	AK301857|TLK1|9874|tousled-like kinase 1##NM_001136555|TLK1|9874|tousled-like kinase 1##AK298020|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##BC007770|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##BC001408|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK296698|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK027349|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##DQ892715|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##DQ895965|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK315508|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK023201|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK225810|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK293640|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK023082|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1	2.981265	0.0	denovo_WM_7:-43:0.256	denovo_WM_7:-44:0.205	denovo_WM_7:-80:0.215	denovo_WM_7:-81:0.267
chr6	28367464	28367623	reg1002743.p4	5.080	+	TSC_hg19_v1_chr6_-_28367519 BC041661 AB007886 NM_001163391	-22	-	TSC_hg19_v1_chr6_+_28317723 AK091225 AX746861 NM_001242894 NM_001242895 NM_024493 AK122790 AK313532 BC006118	-49817	+	NM_001243241 NM_001243242 NM_001243244 NM_030899	-63392	-	AK309235 AL833347 AK092117 AX747363 NM_001012455	43710	-	BC133691 BC148315 AY324826 NM_182701	116023	-	AJ005277 BC128159 BC128160 NM_001509 NM_003996 AB463692	126245	+	BC041661|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AB007886|ZSCAN12|9753|zinc finger and SCAN domain containing 12##NM_001163391|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AK091225|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242894|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242895|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_024493|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK122790|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK313532|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##BC006118|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001243241|ZNF323|64288|zinc finger protein 323##NM_001243242|ZNF323|64288|zinc finger protein 323##NM_001243244|ZNF323|64288|zinc finger protein 323##NM_030899|ZNF323|64288|zinc finger protein 323##AK309235|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AL833347|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AK092117|ZSCAN23|222696|zinc finger and SCAN domain containing 23##NM_001012455|ZSCAN23|222696|zinc finger and SCAN domain containing 23##BC133691|GPX6|257202|glutathione peroxidase 6 (olfactory)##BC148315|GPX6|257202|glutathione peroxidase 6 (olfactory)##AY324826|GPX6|257202|glutathione peroxidase 6 (olfactory)##NM_182701|GPX6|257202|glutathione peroxidase 6 (olfactory)##AJ005277|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##BC128159|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##BC128160|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##NM_001509|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)##NM_003996|GPX5|2880|glutathione peroxidase 5 (epididymal androgen-related protein)	0.0	0.0	
chr8	67400940	67401120	reg1004924.p2	5.080	+	NM_144650 AY033237 AK056992 AK300881 BC047492 BC064634 AK293530 AK300243 AK294114 BC110290	-56298	+	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	-59724	+	BC002599 BC011031 AK075431 NM_000756	-310263	-	NM_152765	4460	+	BC032233 NM_001080416 NM_001144755 TSC_hg19_v1_chr8_-_67525502	124444	-	AM392649 AM393766 TSC_hg19_v1_chr8_-_67579266	178201	-	NM_144650|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AY033237|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK056992|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300881|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC047492|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC064634|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK293530|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300243|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK294114|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC110290|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##NM_152765|C8orf46|254778|chromosome 8 open reading frame 46##BC032233|LOC645895|645895|uncharacterized LOC645895##NM_001080416|MYBL1|4603|v-myb myeloblastosis viral oncogene homolog (avian)-like 1##NM_001144755|MYBL1|4603|v-myb myeloblastosis viral oncogene homolog (avian)-like 1##AM392649|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1##AM393766|VCPIP1|80124|valosin containing protein (p97)/p47 complex interacting protein 1	1.975723	0.0	denovo_WM_7:-32:0.240	denovo_WM_7:-35:0.650
chr10	103866268	103866412	reg1010134.p1	5.079	+	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	-41198	+	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	-50428	-	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-262733	-	AK300588 TSC_hg19_v1_chr10_-_103874641	8279	-	TSC_hg19_v1_chr10_-_103874760 BC000482 BC009246 NM_003893	8388	-	TSC_hg19_v1_chr10_-_103879963 NM_001113407	13803	-	NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##AK300588|LDB1|8861|LIM domain binding 1##BC000482|LDB1|8861|LIM domain binding 1##BC009246|LDB1|8861|LIM domain binding 1##NM_003893|LDB1|8861|LIM domain binding 1##NM_001113407|LDB1|8861|LIM domain binding 1	2.765016	0.0	denovo_WM_7:-3:0.764	denovo_WM_7:-18:0.764	denovo_WM_7:-33:0.784
chr1	166272876	166272996	reg1008457.p2	5.079	+	TSC_hg19_v1_chr1_-_166136076 BC114214	-136796	-	TSC_hg19_v1_chr1_-_166135982 AB593134	-136951	-	TSC_hg19_v1_chr1_-_166135951 NM_001017961	-136982	-	AK293946 AK299537 TSC_hg19_v1_chr1_+_166808680	535756	+	TSC_hg19_v1_chr1_+_166808734 AB040946 NM_017542 AK056711 BC131624	535809	+	AB590621 EU446601 AK290964 TSC_hg19_v1_chr1_-_166845502 BC015401 AK309250	572562	-	BC114214|FAM78B|149297|family with sequence similarity 78, member B##NM_001017961|FAM78B|149297|family with sequence similarity 78, member B##AK293946|POGK|57645|pogo transposable element with KRAB domain##AK299537|POGK|57645|pogo transposable element with KRAB domain##AB040946|POGK|57645|pogo transposable element with KRAB domain##NM_017542|POGK|57645|pogo transposable element with KRAB domain##AK056711|POGK|57645|pogo transposable element with KRAB domain##BC131624|POGK|57645|pogo transposable element with KRAB domain##EU446601|TADA1|117143|transcriptional adaptor 1##AK290964|TADA1|117143|transcriptional adaptor 1##BC015401|TADA1|117143|transcriptional adaptor 1##AK309250|TADA1|117143|transcriptional adaptor 1	1.993412	0.0	denovo_WM_7:44:0.492	denovo_WM_7:45:0.328	denovo_WM_7:60:0.331	denovo_WM_7:61:0.495
chr13	30881078	30881258	reg1009455.p1	5.079	+	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-17	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-456327	-	TSC_hg19_v1_chr13_-_30424719 AK056580	-456466	-	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	401	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	158825	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	158890	-	AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##AK056580|UBL3|5412|ubiquitin-like 3##AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1	0.0	0.0	
chr15	80259497	80259614	reg1008904.p1	5.079	+	TSC_hg19_v1_chr15_-_80216042 AF249277	-43517	-	NM_001100880 NM_001199757	-43892	-	NM_001199760	-44108	-	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	3996	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	92387	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	92474	+	AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001199760|ST20-MTHFS|100528021|ST20-MTHFS readthrough##BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6	0.99947	0.0	
chr17	1283488	1283668	reg1001041.p2	5.079	+	TSC_hg19_v1_chr17_-_1248347 L13388	-35222	-	AB090231 NM_172367 BC142615	-100614	+	NM_001164405	-109721	+	TSC_hg19_v1_chr17_-_1303504 BT007161 CU674076 EU176525 U28936 AB590347 BC000179 AX775995 U43399 U43430 U54778 U20972 BC001440 AY883089 AK295260 AK295997 AK296050 AK296555 AK128785 AK316185 AK316201	19891	-	TSC_hg19_v1_chr17_-_1303556 NM_006761	19975	-	BT007277 DQ891147 DQ894327 AB528363 TSC_hg19_v1_chr17_-_1359527 D10656 BC001718 BC009837 AK291060 BC008506 NM_005206 NM_016823	75914	-	L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##BT007161|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##EU176525|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U28936|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BC000179|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U43399|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U43430|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U54778|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##U20972|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BC001440|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AY883089|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK295260|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK295997|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK296050|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK296555|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK128785|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK316185|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##AK316201|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##NM_006761|YWHAE|7531|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide##BT007277|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##DQ891147|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##DQ894327|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##D10656|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##BC001718|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##BC009837|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##AK291060|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##BC008506|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##NM_005206|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)##NM_016823|CRK|1398|v-crk sarcoma virus CT10 oncogene homolog (avian)	0.0	0.0	
chr2	85165572	85165752	reg1003364.p1	5.079	+	TSC_hg19_v1_chr2_+_85133055 M92381	-32600	+	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	-32867	+	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	-57359	-	TSC_hg19_v1_chr2_+_85198299 NM_020122	32622	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	32829	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	194997	+	M92381|TMSB10|9168|thymosin beta 10##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)	1.939077	0.0	denovo_WM_7:23:0.637	denovo_WM_7:89:0.922
chr8	8882409	8882550	reg1012487.p1	5.079	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-21974	+	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	-22114	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	-131541	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	125699	-	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	126621	-	TSC_hg19_v1_chr8_+_9413421 BC098394	530926	+	AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.0	0.0	
chr12	53965219	53965370	reg1011427.p1	5.078	+	BC104234 BC104235 AF005271 NM_003717	-63898	-	NM_134324	-69918	+	TSC_hg19_v1_chr12_+_53895135 AK309569 U08998 AK290737 AK293728 AB464283 BT007140 DQ893549 DQ893931	-70166	+	AB463398 X57197 NM_001130059	29499	-	TSC_hg19_v1_chr12_-_54019764 BC042363 NM_001206683	54441	-	TSC_hg19_v1_chr12_-_54020167 BC136302 X52943 AK298853 AK313507 BC032433 BC140006 NM_001130060 NM_001206682 NM_006856	54859	-	BC104234|NPFF|8620|neuropeptide FF-amide peptide precursor##BC104235|NPFF|8620|neuropeptide FF-amide peptide precursor##AF005271|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_003717|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_134324|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK309569|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##U08998|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK290737|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##BT007140|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893549|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893931|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##X57197|ATF7|11016|activating transcription factor 7##NM_001130059|ATF7|11016|activating transcription factor 7##BC042363|ATF7|11016|activating transcription factor 7##NM_001206683|ATF7|11016|activating transcription factor 7##BC136302|ATF7|11016|activating transcription factor 7##X52943|ATF7|11016|activating transcription factor 7##AK298853|ATF7|11016|activating transcription factor 7##AK313507|ATF7|11016|activating transcription factor 7##BC032433|ATF7|11016|activating transcription factor 7##BC140006|ATF7|11016|activating transcription factor 7##NM_001130060|ATF7|11016|activating transcription factor 7##NM_001206682|ATF7|11016|activating transcription factor 7##NM_006856|ATF7|11016|activating transcription factor 7	0.0	0.0	
chr20	30440628	30440719	reg1007745.p1	5.078	+	AF042831 BT009768 AB464535 DQ896105 EU176391 BC013408 NM_004118	-7304	-	AJ272502 BC092413 NM_033118 BX647635	-33489	+	NM_012112 TSC_hg19_v1_chr20_+_30327092 AK312549 AB024704 AF098158 AF287265 BC020207 BC004136	-113636	+	NM_001012644	17127	-	NM_177991 AK091960 CU691186	17402	-	BC056911 AK097430 NM_080611	17742	-	AF042831|FOXS1|2307|forkhead box S1##BT009768|FOXS1|2307|forkhead box S1##DQ896105|FOXS1|2307|forkhead box S1##EU176391|FOXS1|2307|forkhead box S1##BC013408|FOXS1|2307|forkhead box S1##NM_004118|FOXS1|2307|forkhead box S1##AJ272502|MYLK2|85366|myosin light chain kinase 2##BC092413|MYLK2|85366|myosin light chain kinase 2##NM_033118|MYLK2|85366|myosin light chain kinase 2##BX647635|MYLK2|85366|myosin light chain kinase 2##NM_012112|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AK312549|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AB024704|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF098158|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##AF287265|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC020207|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##BC004136|TPX2|22974|TPX2, microtubule-associated, homolog (Xenopus laevis)##NM_001012644|DUSP15|128853|dual specificity phosphatase 15##NM_177991|DUSP15|128853|dual specificity phosphatase 15##AK091960|DUSP15|128853|dual specificity phosphatase 15##BC056911|DUSP15|128853|dual specificity phosphatase 15##AK097430|C20orf57|83747|chromosome 20 open reading frame 57##NM_080611|DUSP15|128853|dual specificity phosphatase 15	0.97289	0.843766	CTCF.p2:1:0.844	denovo_WM_7:-51:0.973
chr3	12689749	12689929	reg1005322.p3	5.078	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-91259	+	NM_001195279	-102877	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-163603	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	15628	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	15776	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	15835	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.999816	0.0	denovo_WM_7:-42:0.230	denovo_WM_7:-43:0.230	denovo_WM_7:-44:0.230	denovo_WM_7:-45:0.230
chr6_cox_hap2	4041283	4041433	reg1010880.p2	5.078	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr8	82503250	82503338	reg1007886.p1	5.078	+	NM_001105281 EU733650 BC146973 BC146981	-59714	-	AB590738 BT006809 CR456903 J02874 TSC_hg19_v1_chr8_-_82395472 BC003672 NM_001442	-107856	-	AB528797 NM_001080526	-129537	-	AK300750 TSC_hg19_v1_chr8_-_82598565 AK312823 AK297078 BC008381 BC009565 AF042729 NM_001144878 NM_001144879 NM_005536	95258	-	AY825924 NM_001010893 BC136625 BC136631	103952	-	TSC_hg19_v1_chr8_-_82633531 CR457323 BC051857 AK304111 BC056877 BC022251 AK024069 AK225195 NM_001170796 NM_001170797 NM_024699	130232	-	NM_001105281|FABP12|646486|fatty acid binding protein 12##EU733650|FABP12|646486|fatty acid binding protein 12##BC146973|FABP12|646486|fatty acid binding protein 12##BC146981|FABP12|646486|fatty acid binding protein 12##BT006809|FABP4|2167|fatty acid binding protein 4, adipocyte##CR456903|FABP4|2167|fatty acid binding protein 4, adipocyte##J02874|FABP4|2167|fatty acid binding protein 4, adipocyte##BC003672|FABP4|2167|fatty acid binding protein 4, adipocyte##NM_001442|FABP4|2167|fatty acid binding protein 4, adipocyte##NM_001080526|FABP9|646480|fatty acid binding protein 9, testis##AK300750|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AK312823|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AK297078|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##BC008381|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##BC009565|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AF042729|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##NM_001144878|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##NM_001144879|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##NM_005536|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AY825924|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##NM_001010893|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##BC136625|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##BC136631|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##CR457323|ZFAND1|79752|zinc finger, AN1-type domain 1##BC051857|ZFAND1|79752|zinc finger, AN1-type domain 1##AK304111|ZFAND1|79752|zinc finger, AN1-type domain 1##BC056877|ZFAND1|79752|zinc finger, AN1-type domain 1##BC022251|ZFAND1|79752|zinc finger, AN1-type domain 1##AK024069|ZFAND1|79752|zinc finger, AN1-type domain 1##AK225195|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001170796|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001170797|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_024699|ZFAND1|79752|zinc finger, AN1-type domain 1	0.21805	0.425646	CTCF.p2:1:0.426	denovo_WM_7:39:0.218
chr11	105893567	105893747	reg1003692.p2	5.077	+	TSC_hg19_v1_chr11_-_105892952 AL834523 BC041118 AB058729 NM_032424	-698	-	BC015199 NM_001112812 BC146816	-412227	+	NM_000829 NM_001077243 NM_001077244 TSC_hg19_v1_chr11_+_105480799 BC045546 BC142654 BC150209 BC035610	-412768	+	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	54708	+	NM_152433 NM_198439	54807	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	995431	-	AL834523|KIAA1826|84437|KIAA1826##BC041118|KIAA1826|84437|KIAA1826##AB058729|KIAA1826|84437|KIAA1826##NM_032424|KIAA1826|84437|KIAA1826##BC015199|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001112812|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC146816|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_000829|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077243|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##NM_001077244|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC045546|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC142654|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC150209|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##BC035610|GRIA4|2893|glutamate receptor, ionotrophic, AMPA 4##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2	1.066212	0.0	
chr16	32001870	32001989	reg1009291.p2	5.077	+	TSC_hg19_v1_chr16_+_31885159 BC036367 BC127088 BC127089 AK292573	-116725	+	AF220492 TSC_hg19_v1_chr16_+_31885131	-116797	+	TSC_hg19_v1_chr16_+_31885114 AK096390	-116813	+	TSC_hg19_v1_chr16_-_32199418 AK300387	197490	-	AB023508 AB023509 BC096700 BC099842 NM_001243722 AK312220 CR541650	262729	+	CR541650 AK312220 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AB023508	685504	-	BC036367|ZNF267|10308|zinc finger protein 267##BC127088|ZNF267|10308|zinc finger protein 267##BC127089|ZNF267|10308|zinc finger protein 267##AK292573|ZNF267|10308|zinc finger protein 267##AF220492|ZNF267|10308|zinc finger protein 267##AK096390|ZNF267|10308|zinc finger protein 267##AK300387|LOC100289574|100289574|hect domain and RLD 2 pseudogene##AB023508|TP53TG3|24150|TP53 target 3##AB023509|TP53TG3|24150|TP53 target 3##BC096700|TP53TG3|24150|TP53 target 3##BC099842|TP53TG3|24150|TP53 target 3##NM_001243722|LOC729264|729264|TP53-target gene 3 protein-like##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AK312220|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AB023508|TP53TG3|24150|TP53 target 3	0.579377	0.0	denovo_WM_7:-42:0.579
chr17	57078551	57078680	reg1000810.p1	5.077	+	AB028995 AF260269 BC151228 NM_014906 TSC_hg19_v1_chr17_+_56833235 BC136290 BC143845 AF520614	-245321	+	TSC_hg19_v1_chr17_+_56833220 AK289966	-245398	+	TSC_hg19_v1_chr17_+_56769962 AF029669 AK290487 BC073161 NM_002876 NM_058216 BC064578 BC093930 BC101485 BC143259 BC000667 AF029670 AB528656 BT007339 AK129738 AK303363	-308614	+	TSC_hg19_v1_chr17_-_57184098 AF213365 AK289674 BX537955	105458	-	BC036012 TSC_hg19_v1_chr17_-_57184114	105499	-	TSC_hg19_v1_chr17_-_57184116 AK292459	105524	-	AB028995|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF260269|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC151228|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##NM_014906|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC136290|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##BC143845|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF520614|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AK289966|PPM1E|22843|protein phosphatase, Mg2+/Mn2+ dependent, 1E##AF029669|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK290487|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC073161|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_002876|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_058216|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC093930|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC101485|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC143259|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC000667|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF029670|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BT007339|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK303363|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF213365|TRIM37|4591|tripartite motif containing 37##AK289674|TRIM37|4591|tripartite motif containing 37##BX537955|TRIM37|4591|tripartite motif containing 37##BC036012|TRIM37|4591|tripartite motif containing 37##AK292459|TRIM37|4591|tripartite motif containing 37	1.002619	0.0	denovo_WM_7:-47:0.758
chr5	10579568	10579748	reg1001044.p2	5.077	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-15216	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-137506	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-137655	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	181601	-	TSC_hg19_v1_chr5_-_10761341 BC002726	181684	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	181741	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.0	0.0	
chr7	56074827	56074928	reg1007918.p2	5.077	+	TSC_hg19_v1_chr7_+_56032277 NM_001202469 NM_001483 AK097049 AK315648 BC030821 AF029786 BC000732 BC001837 AJ001259 AB528140 AM392838 BT007112 CR407612 CU674374 DQ892309 DQ895508	-42460	+	TSC_hg19_v1_chr7_+_56019577 AK026553 BC047445 AF077035 NM_015969 BC054031	-55296	+	AK097282 NM_182633 AB464411	-94529	+	TSC_hg19_v1_chr7_-_56101850 AK315235	26974	-	BC063614 BX537439 TSC_hg19_v1_chr7_-_56119246 AK054677 NM_004577 BC052958	44332	-	NM_001009186 NM_001762 TSC_hg19_v1_chr7_+_56119432 AB063318	44529	+	NM_001202469|GBAS|2631|glioblastoma amplified sequence##NM_001483|GBAS|2631|glioblastoma amplified sequence##AK097049|GBAS|2631|glioblastoma amplified sequence##AK315648|GBAS|2631|glioblastoma amplified sequence##BC030821|GBAS|2631|glioblastoma amplified sequence##AF029786|GBAS|2631|glioblastoma amplified sequence##BC000732|GBAS|2631|glioblastoma amplified sequence##BC001837|GBAS|2631|glioblastoma amplified sequence##AJ001259|GBAS|2631|glioblastoma amplified sequence##AM392838|GBAS|2631|glioblastoma amplified sequence##BT007112|GBAS|2631|glioblastoma amplified sequence##CR407612|GBAS|2631|glioblastoma amplified sequence##DQ892309|GBAS|2631|glioblastoma amplified sequence##DQ895508|GBAS|2631|glioblastoma amplified sequence##AK026553|MRPS17|51373|mitochondrial ribosomal protein S17##BC047445|MRPS17|51373|mitochondrial ribosomal protein S17##AF077035|MRPS17|51373|mitochondrial ribosomal protein S17##NM_015969|MRPS17|51373|mitochondrial ribosomal protein S17##BC054031|MRPS17|51373|mitochondrial ribosomal protein S17##AK097282|ZNF713|349075|zinc finger protein 713##NM_182633|ZNF713|349075|zinc finger protein 713##AK315235|PSPH|5723|phosphoserine phosphatase##BC063614|PSPH|5723|phosphoserine phosphatase##BX537439|PSPH|5723|phosphoserine phosphatase##AK054677|PSPH|5723|phosphoserine phosphatase##NM_004577|PSPH|5723|phosphoserine phosphatase##BC052958|PSPH|5723|phosphoserine phosphatase##NM_001009186|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##NM_001762|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##AB063318|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)	0.998946	0.0	
chr12	91832277	91832430	reg1009345.p1	5.076	+	NM_001920	-255548	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-255773	-	AK291309 BX571756 TSC_hg19_v1_chr12_-_91573325 NM_133503	-259042	-	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	707290	-	AJ845165 AJ845166 NM_001025233	985381	+	AJ845168 NM_001025232	989570	-	NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AK291309|DCN|1634|decorin##BX571756|DCN|1634|decorin##NM_133503|DCN|1634|decorin##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand	0.99897	0.0	denovo_WM_7:47:0.314	denovo_WM_7:48:0.314	denovo_WM_7:49:0.314
chr17	46189141	46189266	reg1007164.p2	5.076	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-4051	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-4218	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-10382	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	318335	-	TSC_hg19_v1_chr17_-_46507604 BC039040	318414	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	419068	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	0.405166	0.0	denovo_WM_7:39:0.393
chr2	12146097	12146264	reg1009876.p1	5.076	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-259405	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-335889	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-463337	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	711073	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	711736	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	712217	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.01812	0.0	
chr3	152198043	152198223	reg1009834.p2	5.076	+	AY358260 NM_001123228	-139355	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-180940	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-210788	-	NM_002563 Z49205	354602	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	681893	+	TSC_hg19_v1_chr3_+_152880058 BC012362	681915	+	AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family	0.0	0.0	
chr1	247603420	247603555	reg1011175.p1	5.075	+	AF410477 AF427617 NM_001127462 NM_001243133 NM_004895 NM_183395	-22137	+	AK314998 NM_001079821 NM_001127461 TSC_hg19_v1_chr1_+_247579474 AB208891	-24018	+	TSC_hg19_v1_chr1_-_247494994 BC007263 NM_032752	-108470	-	NM_001004492 BC137181 BC137205	11808	-	BC137203 BC137204 NM_001004698	50882	+	BC030717 NM_198074	93653	-	AF410477|NLRP3|114548|NLR family, pyrin domain containing 3##AF427617|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127462|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001243133|NLRP3|114548|NLR family, pyrin domain containing 3##NM_004895|NLRP3|114548|NLR family, pyrin domain containing 3##NM_183395|NLRP3|114548|NLR family, pyrin domain containing 3##AK314998|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001079821|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127461|NLRP3|114548|NLR family, pyrin domain containing 3##AB208891|NLRP3|114548|NLR family, pyrin domain containing 3##BC007263|ZNF496|84838|zinc finger protein 496##NM_032752|ZNF496|84838|zinc finger protein 496##NM_001004492|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137181|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137205|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137203|OR2W5|441932|olfactory receptor, family 2, subfamily W, member 5##BC137204|OR2W5|441932|olfactory receptor, family 2, subfamily W, member 5##NM_001004698|OR2W5|441932|olfactory receptor, family 2, subfamily W, member 5##BC030717|OR2C3|81472|olfactory receptor, family 2, subfamily C, member 3##NM_198074|OR2C3|81472|olfactory receptor, family 2, subfamily C, member 3	0.0	0.0	
chr18	49157202	49157382	reg1004791.p1	5.075	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-433252	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-433580	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-434066	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	709249	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	709821	+	TSC_hg19_v1_chr18_-_51690988 AL110266	2533700	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	0.0	0.0	
chr3	72034278	72034458	reg1001010.p2	5.075	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-200097	-	AK313656 NM_173359	-230445	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-230846	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	863180	-	BC017274 TSC_hg19_v1_chr3_-_72897575	863207	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	863224	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.0	0.0	
chr9	102007276	102007402	reg1003716.p1	5.075	+	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-22752	+	TSC_hg19_v1_chr9_-_101984233 NM_033087	-23096	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	-23122	-	TSC_hg19_v1_chr9_-_102582187 AK057451	574826	-	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	576818	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	661588	+	AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17	0.0	0.0	
chrX	106917263	106917436	reg1008644.p1	5.075	+	AK307748 AK312706 AK316467 TSC_hg19_v1_chrX_+_106871744 AK297968 BC001605 X15331 AK223169 DQ895833 EU176362 AB464022 CU674782	-45551	+	NM_001204402 NM_002764 TSC_hg19_v1_chrX_+_106871719 D00860	-45654	+	BC033510 NM_001169154 NM_173494	-467488	+	BC018148 Z50781 NM_001015881	42304	-	CR533450 EU831656 EU831739 TSC_hg19_v1_chrX_-_106960193 AK311834 AY007119 AK127938	42780	-	AF153603 AF228339 AB025432 AF183393 BC072446 TSC_hg19_v1_chrX_-_106960293 AL110191 NM_004089 CR933650	42932	-	AK307748|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK312706|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK316467|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK297968|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC001605|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##X15331|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK223169|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##DQ895833|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##EU176362|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_001204402|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_002764|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##D00860|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC033510|CXorf41|139212|chromosome X open reading frame 41##NM_001169154|CXorf41|139212|chromosome X open reading frame 41##NM_173494|CXorf41|139212|chromosome X open reading frame 41##BC018148|TSC22D3|1831|TSC22 domain family, member 3##Z50781|TSC22D3|1831|TSC22 domain family, member 3##NM_001015881|TSC22D3|1831|TSC22 domain family, member 3##CR533450|TSC22D3|1831|TSC22 domain family, member 3##EU831656|TSC22D3|1831|TSC22 domain family, member 3##EU831739|TSC22D3|1831|TSC22 domain family, member 3##AK311834|TSC22D3|1831|TSC22 domain family, member 3##AY007119|TSC22D3|1831|TSC22 domain family, member 3##AK127938|TSC22D3|1831|TSC22 domain family, member 3##AF153603|TSC22D3|1831|TSC22 domain family, member 3##AF228339|TSC22D3|1831|TSC22 domain family, member 3##AB025432|TSC22D3|1831|TSC22 domain family, member 3##AF183393|TSC22D3|1831|TSC22 domain family, member 3##BC072446|TSC22D3|1831|TSC22 domain family, member 3##AL110191|TSC22D3|1831|TSC22 domain family, member 3##NM_004089|TSC22D3|1831|TSC22 domain family, member 3##CR933650|TSC22D3|1831|TSC22 domain family, member 3	0.168269	0.0	
chr10	116286710	116286830	reg1008334.p3	5.074	+	TSC_hg19_v1_chr10_-_116286673 CR749819 NM_006720 AK098277	-91	-	TSC_hg19_v1_chr10_-_116286631 AK298709 BC002448	-168	-	CU677968 TSC_hg19_v1_chr10_-_116251632	-35163	-	AK297344 TSC_hg19_v1_chr10_-_116392101	105330	-	AF005654 NM_002313	131286	-	AB462929 TSC_hg19_v1_chr10_-_116444183 D31883	157393	-	CR749819|ABLIM1|3983|actin binding LIM protein 1##NM_006720|ABLIM1|3983|actin binding LIM protein 1##AK098277|ABLIM1|3983|actin binding LIM protein 1##AK298709|ABLIM1|3983|actin binding LIM protein 1##BC002448|ABLIM1|3983|actin binding LIM protein 1##AK297344|ABLIM1|3983|actin binding LIM protein 1##AF005654|ABLIM1|3983|actin binding LIM protein 1##NM_002313|ABLIM1|3983|actin binding LIM protein 1##D31883|ABLIM1|3983|actin binding LIM protein 1	0.694427	0.0	denovo_WM_7:2:0.421	denovo_WM_7:3:0.258
chr12	129391226	129391344	reg1008977.p2	5.074	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	-53198	+	BC043528 TSC_hg19_v1_chr12_+_129337985	-53301	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	-82842	-	BC114626 BC114936 NM_133448 AB061814	996926	-	AK056047 TSC_hg19_v1_chr12_-_130646911	1255571	-	TSC_hg19_v1_chr12_+_130647008 BC070037 NM_007197	1255725	+	AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D##AK056047|FLJ31485|440119|uncharacterized LOC440119##BC070037|FZD10|11211|frizzled family receptor 10##NM_007197|FZD10|11211|frizzled family receptor 10	1.940286	0.0	denovo_WM_7:-7:0.886	denovo_WM_7:-22:0.872
chr2	64328367	64328547	reg1011634.p1	5.074	+	TSC_hg19_v1_chr2_-_64246563 AK292669 AK292889	-81952	-	BC030275 NM_001005739 NM_016516 TSC_hg19_v1_chr2_-_64246305	-82195	-	BX647825 NM_006759 AK314263 TSC_hg19_v1_chr2_+_64069029 BC047004 BC000173	-259431	+	TSC_hg19_v1_chr2_-_64371555 AK022261 BC063611 BC050533 AK312441 BC050019 NM_020651	43067	-	TSC_hg19_v1_chr2_+_64681295 NM_014181	352843	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	353191	+	AK292669|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##AK292889|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##BC030275|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_001005739|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_016516|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##BX647825|UGP2|7360|UDP-glucose pyrophosphorylase 2##NM_006759|UGP2|7360|UDP-glucose pyrophosphorylase 2##AK314263|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC047004|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC000173|UGP2|7360|UDP-glucose pyrophosphorylase 2##BC063611|PELI1|57162|pellino homolog 1 (Drosophila)##BC050533|PELI1|57162|pellino homolog 1 (Drosophila)##AK312441|PELI1|57162|pellino homolog 1 (Drosophila)##BC050019|PELI1|57162|pellino homolog 1 (Drosophila)##NM_020651|PELI1|57162|pellino homolog 1 (Drosophila)##NM_014181|LGALSL|29094|lectin, galactoside-binding-like##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like	1.056459	0.0	denovo_WM_7:14:0.707
chr3	151045324	151045504	reg1001276.p1	5.074	+	AF237763 BC112941 BC117565 AB031548 BC132888 BC132890 AK027784 NM_023915	-10840	-	BC034989 D13626 NM_014879	-49223	-	AK289617 NM_001081455	-78465	-	BC041116 JF810883 BC029363 AK313208 NM_176894	1908	-	AF313449 AF321815 NM_176876	13097	-	AK292096 AK303714 AK316575 TSC_hg19_v1_chr3_-_151102542 BC017898 NM_022788	57130	-	AF237763|GPR87|53836|G protein-coupled receptor 87##BC112941|GPR87|53836|G protein-coupled receptor 87##BC117565|GPR87|53836|G protein-coupled receptor 87##AB031548|GPR87|53836|G protein-coupled receptor 87##BC132888|GPR87|53836|G protein-coupled receptor 87##BC132890|GPR87|53836|G protein-coupled receptor 87##AK027784|GPR87|53836|G protein-coupled receptor 87##NM_023915|GPR87|53836|G protein-coupled receptor 87##BC034989|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##D13626|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_014879|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##AK289617|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_001081455|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##BC041116|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##BC029363|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##AK313208|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##NM_176894|P2RY13|53829|purinergic receptor P2Y, G-protein coupled, 13##AF313449|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AF321815|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##NM_176876|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AK292096|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AK303714|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##AK316575|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##BC017898|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12##NM_022788|P2RY12|64805|purinergic receptor P2Y, G-protein coupled, 12	0.988715	0.0	denovo_WM_7:-49:0.871
chr4	14964682	14964811	reg1007181.p2	5.074	+	TSC_hg19_v1_chr4_-_13629350 BC065546 BC043603 AF528529 NM_148894 BC087835	-1335429	-	TSC_hg19_v1_chr4_-_13549425 BC035174 AK058104 BC048110 BC053955	-1415332	-	AB463932 AF009801 EU446467 BC111966 NM_001189	-1418671	-	BC039114 BC044764 BC047127 TSC_hg19_v1_chr4_-_15003743	38963	-	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	39249	-	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	39551	+	BC065546|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC043603|BOD1L|259282|biorientation of chromosomes in cell division 1-like##AF528529|BOD1L|259282|biorientation of chromosomes in cell division 1-like##NM_148894|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC087835|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC035174|LOC285548|285548|uncharacterized LOC285548##AK058104|LOC285548|285548|uncharacterized LOC285548##BC048110|LOC285548|285548|uncharacterized LOC285548##BC053955|LOC285548|285548|uncharacterized LOC285548##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2##BC039114|LOC441009|441009|uncharacterized LOC441009##BC044764|LOC441009|441009|uncharacterized LOC441009##BC047127|LOC441009|441009|uncharacterized LOC441009##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2	0.997593	0.0	denovo_WM_7:49:0.449	denovo_WM_7:50:0.449
chr11	119227088	119227228	reg1008352.p1	5.073	+	AJ862823 BC036675 AB055505 AK295203 AK055132 NM_015645 NM_031433	-9785	-	TSC_hg19_v1_chr11_-_119211575 AF329841 AY358383 BC029485	-15576	-	AL110261 AB590791 TSC_hg19_v1_chr11_-_119211170	-16056	-	AF079564 AK301805 AK292255 TSC_hg19_v1_chr11_-_119234855	7584	-	TSC_hg19_v1_chr11_-_119234904 AK309582 AF440755 NM_171997	7724	-	TSC_hg19_v1_chr11_-_119252321 BC002854 BC002955	25153	-	AJ862823|MFRP|83552|membrane frizzled-related protein##BC036675|MFRP|83552|membrane frizzled-related protein##AB055505|MFRP|83552|membrane frizzled-related protein##AK295203|MFRP|83552|membrane frizzled-related protein##AK055132|MFRP|83552|membrane frizzled-related protein##NM_015645|C1QTNF5|114902|C1q and tumor necrosis factor related protein 5##NM_031433|MFRP|83552|membrane frizzled-related protein##AF329841|C1QTNF5|114902|C1q and tumor necrosis factor related protein 5##AY358383|C1QTNF5|114902|C1q and tumor necrosis factor related protein 5##BC029485|MFRP|83552|membrane frizzled-related protein##AL110261|MFRP|83552|membrane frizzled-related protein##AF079564|USP2|9099|ubiquitin specific peptidase 2##AK301805|USP2|9099|ubiquitin specific peptidase 2##AK292255|USP2|9099|ubiquitin specific peptidase 2##AF440755|USP2|9099|ubiquitin specific peptidase 2##NM_171997|USP2|9099|ubiquitin specific peptidase 2##BC002854|USP2|9099|ubiquitin specific peptidase 2##BC002955|USP2|9099|ubiquitin specific peptidase 2	0.0	0.247721	CTCF.p2:20:0.248
chr14	23590089	23590256	reg1011111.p2	5.073	+	NM_001805	-1353	-	AF124726 NM_001164814 NM_001164815 NM_014977	-25350	-	TSC_hg19_v1_chr14_+_23564792 BC009645	-25385	+	TSC_hg19_v1_chr14_-_23623523 AK307609 AK300384 BX248288 NM_182728	33389	-	TSC_hg19_v1_chr14_-_23652818 AB037669	62650	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	62700	-	NM_001805|CEBPE|1053|CCAAT/enhancer binding protein (C/EBP), epsilon##AF124726|ACIN1|22985|apoptotic chromatin condensation inducer 1##NM_001164814|ACIN1|22985|apoptotic chromatin condensation inducer 1##NM_001164815|ACIN1|22985|apoptotic chromatin condensation inducer 1##NM_014977|ACIN1|22985|apoptotic chromatin condensation inducer 1##BC009645|C14orf119|55017|chromosome 14 open reading frame 119##AK307609|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK300384|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##BX248288|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_182728|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AB037669|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8	0.0	1.987092	CTCF.p2:-20:0.998	CTCF.p2:47:0.989
chr2	198126548	198126718	reg1008928.p1	5.073	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-335189	-	BC137150 BC137151 AY358249 NM_213608	-451696	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-462220	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	48749	-	TSC_hg19_v1_chr2_-_198175459 BC063622	48840	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	48886	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.0	0.0	
chr6	73352189	73352326	reg1009203.p1	5.073	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	-20196	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	-20368	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	-20687	+	BC004267 NM_001126063	582917	-	TSC_hg19_v1_chr6_-_73972815 BC022080 NM_030568 AK054891	620609	-	TSC_hg19_v1_chr6_+_73972992 BC031876 AK094485	620716	+	AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC004267|KHDC1L|100129128|KH homology domain containing 1-like##NM_001126063|KHDC1L|100129128|KH homology domain containing 1-like##BC022080|KHDC1|80759|KH homology domain containing 1##NM_030568|KHDC1|80759|KH homology domain containing 1	0.0	0.0	
chr12	92579795	92579940	reg1009401.p1	5.072	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-40224	-	NM_001920	-1003062	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-1003287	-	AJ845165 AJ845166 NM_001025233	237867	+	AJ845168 NM_001025232	242056	-	NM_001037671 NM_001178097	516751	+	BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74	0.0	0.0	
chr15	41731093	41731203	reg1010131.p1	5.072	+	TSC_hg19_v1_chr15_+_41709329 NM_015138 AK292302 D87440 BC015052 AB383821	-21788	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	-36486	-	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	-105983	+	NM_002220 TSC_hg19_v1_chr15_+_41786071 BC026331 X54938 AB463780	54942	+	BC143903 D16105 AK314006 BC045607 X60702 AK296892 NM_001135685 NM_002344 NM_206961	74890	-	AB037824 TSC_hg19_v1_chr15_-_41836456 AK290224 BC000246	105301	-	NM_015138|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK292302|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##D87440|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC015052|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_002220|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC026331|ITPKA|3706|inositol-trisphosphate 3-kinase A##X54938|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC143903|LTK|4058|leukocyte receptor tyrosine kinase##D16105|LTK|4058|leukocyte receptor tyrosine kinase##AK314006|LTK|4058|leukocyte receptor tyrosine kinase##BC045607|LTK|4058|leukocyte receptor tyrosine kinase##X60702|LTK|4058|leukocyte receptor tyrosine kinase##AK296892|LTK|4058|leukocyte receptor tyrosine kinase##NM_001135685|LTK|4058|leukocyte receptor tyrosine kinase##NM_002344|LTK|4058|leukocyte receptor tyrosine kinase##NM_206961|LTK|4058|leukocyte receptor tyrosine kinase##AB037824|RPAP1|26015|RNA polymerase II associated protein 1##AK290224|RPAP1|26015|RNA polymerase II associated protein 1##BC000246|RPAP1|26015|RNA polymerase II associated protein 1	3.224512	0.034826	denovo_WM_7:25:0.793	denovo_WM_7:-80:0.962	denovo_WM_7:89:0.411	denovo_WM_7:92:0.350
chr16	20949923	20950059	reg1010616.p1	5.072	+	TSC_hg19_v1_chr16_+_20912407 BC017039	-37583	+	AK311415 NM_001128301 NM_001128302 TSC_hg19_v1_chr16_+_20912121 AK311881	-37870	+	BX648998 NM_173475 TSC_hg19_v1_chr16_-_20911681 BC040442 BX648185	-38341	-	NM_020422 TSC_hg19_v1_chr16_+_21169994 AK074667 AK293557 BC015812	219991	+	AF494040 NM_017539	220770	-	BC096304 BC096305 BC096306 BC096307 M90366 NM_003460 AK313003 AK293805 AK308820	272889	-	BC017039|LYRM1|57149|LYR motif containing 1##AK311415|LYRM1|57149|LYR motif containing 1##NM_001128301|LYRM1|57149|LYR motif containing 1##NM_001128302|LYRM1|57149|LYR motif containing 1##AK311881|LYRM1|57149|LYR motif containing 1##BX648998|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##NM_173475|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##BC040442|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##NM_020422|TMEM159|57146|transmembrane protein 159##AK074667|TMEM159|57146|transmembrane protein 159##AK293557|TMEM159|57146|transmembrane protein 159##BC015812|TMEM159|57146|transmembrane protein 159##AF494040|DNAH3|55567|dynein, axonemal, heavy chain 3##NM_017539|DNAH3|55567|dynein, axonemal, heavy chain 3##BC096304|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##BC096305|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##BC096306|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##BC096307|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##M90366|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##NM_003460|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##AK313003|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##AK293805|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##AK308820|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)	1.242669	0.0	denovo_WM_7:8:0.239	denovo_WM_7:9:0.239	denovo_WM_7:10:0.238	denovo_WM_7:11:0.238
chr6	131350487	131350592	reg1002033.p1	5.072	+	CR749262 CR936793 NM_001252660	-28652	-	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	-58988	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	-201977	+	AF027299 TSC_hg19_v1_chr6_-_131384381 BC034718 AB209522	33812	-	TSC_hg19_v1_chr6_-_131384387 AK295124 NM_001135554 NM_001135555 NM_001199388 NM_001431	33885	-	NM_016377 TSC_hg19_v1_chr6_+_131456855 AK300587	106308	+	CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AF027299|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##BC034718|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AB209522|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AK295124|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001135554|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001135555|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199388|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001431|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_016377|AKAP7|9465|A kinase (PRKA) anchor protein 7##AK300587|AKAP7|9465|A kinase (PRKA) anchor protein 7	1.012319	0.0	
chr8	23216287	23216378	reg1008689.p1	5.072	+	AK098436 TSC_hg19_v1_chr8_-_23177535	-38824	-	TSC_hg19_v1_chr8_+_23145630 AL050297 BC032421	-70654	+	TSC_hg19_v1_chr8_+_23145620 NM_001136108 AK293465	-70735	+	BC000594 TSC_hg19_v1_chr8_-_23261609	45269	-	TSC_hg19_v1_chr8_-_23261631 U89942	45296	-	AK222477 AK312266 TSC_hg19_v1_chr8_-_23261634 BC020481 AK293292	45317	-	AK098436|LOXL2|4017|lysyl oxidase-like 2##AL050297|R3HCC1|203069|R3H domain and coiled-coil containing 1##BC032421|R3HCC1|203069|R3H domain and coiled-coil containing 1##NM_001136108|R3HCC1|203069|R3H domain and coiled-coil containing 1##AK293465|R3HCC1|203069|R3H domain and coiled-coil containing 1##BC000594|LOXL2|4017|lysyl oxidase-like 2##U89942|LOXL2|4017|lysyl oxidase-like 2##AK222477|LOXL2|4017|lysyl oxidase-like 2##AK312266|LOXL2|4017|lysyl oxidase-like 2##BC020481|LOXL2|4017|lysyl oxidase-like 2##AK293292|LOXL2|4017|lysyl oxidase-like 2	0.998323	0.0	denovo_WM_7:33:0.477	denovo_WM_7:34:0.477
chr9	3398250	3398430	reg1011513.p1	5.072	+	AK127804 TSC_hg19_v1_chr9_-_3223066	-175304	-	TSC_hg19_v1_chr9_-_2844102 AK315531 NM_014878	-554227	-	TSC_hg19_v1_chr9_-_2844084 AL832245 AK225953 AL832239	-554251	-	TSC_hg19_v1_chr9_-_3525889 AK310956 AK289540	127499	-	TSC_hg19_v1_chr9_-_3525983 BC022191 NM_002919 NM_134428	127664	-	TSC_hg19_v1_chr9_+_3526079 AK125504	127748	+	AK315531|KIAA0020|9933|KIAA0020##NM_014878|KIAA0020|9933|KIAA0020##AL832245|KIAA0020|9933|KIAA0020##AK225953|KIAA0020|9933|KIAA0020##AL832239|KIAA0020|9933|KIAA0020##AK310956|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##AK289540|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##BC022191|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_002919|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_134428|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)	1.007295	0.0	denovo_WM_7:3:0.721	denovo_WM_7:4:0.254
chr11	36091118	36091232	reg1007075.p1	5.071	+	BC136286 BC143823 BC143824 TSC_hg19_v1_chr11_+_35965585 AK293930 AK075546 AK299186 NM_174902 BC042754	-125564	+	AB529107 CU680538 DQ891061 DQ894241 TSC_hg19_v1_chr11_+_35684686	-406502	+	TSC_hg19_v1_chr11_+_35684427 BC024031 AK074242 AJ249128	-406725	+	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	219778	-	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	219811	-	NM_001160167 AK055042	226605	+	BC136286|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143823|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143824|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK293930|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK075546|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK299186|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##NM_174902|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC042754|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##DQ891061|TRIM44|54765|tripartite motif containing 44##DQ894241|TRIM44|54765|tripartite motif containing 44##BC024031|TRIM44|54765|tripartite motif containing 44##AK074242|TRIM44|54765|tripartite motif containing 44##AJ249128|TRIM44|54765|tripartite motif containing 44##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like	0.9017	0.0	denovo_WM_7:18:0.450	denovo_WM_7:19:0.396
chr13	59535178	59535303	reg1011589.p1	5.071	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-1327344	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-1329293	+	NM_001040429	-1329452	+	BC041395 TSC_hg19_v1_chr13_-_60325215	789904	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	1052080	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	1202741	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	0.738265	0.860009	CTCF.p2:1:0.860	denovo_WM_7:35:0.332	denovo_WM_7:-67:0.218
chr3	56807557	56807666	reg1009614.p1	5.071	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-90404	-	BC029354 NM_015224	-109538	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-216365	+	AK293864 AB209661 NM_001128616	2058	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	28300	-	AY221117 NM_181727 BC126274 BC136498	286892	+	BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12	0.0	0.0	
chr4	39947974	39948154	reg1008198.p2	5.071	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-248260	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-307508	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-418438	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	31274	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	31529	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	110468	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.0	0.0	
chr6	80247612	80247724	reg1007418.p1	5.071	+	TSC_hg19_v1_chr6_-_80247114 AK299314 BX648161 BC050327 NM_001122769 NM_181714	-539	-	TSC_hg19_v1_chr6_-_79944400 AK315391 AY043282 NM_001201362 NM_001201363 NM_004242 NM_138730	-303243	-	L40357 TSC_hg19_v1_chr6_-_79944391 AF401520 AF274949 BC009529	-303310	-	TSC_hg19_v1_chr6_+_80341019 AF340151 NM_031469 BC109043 BC109044 AK311757 BC040489 AK074506 BC052987 BC060799 BC070059 AJ297972	93406	+	NM_001243308	332468	-	TSC_hg19_v1_chr6_-_80656870 CU691582 DQ891229 AF277094 BC038506 AY037298 AK310625 AK312511 AK055277 DQ426871 NM_022726	409424	-	AK299314|LCA5|167691|Leber congenital amaurosis 5##BX648161|LCA5|167691|Leber congenital amaurosis 5##BC050327|LCA5|167691|Leber congenital amaurosis 5##NM_001122769|LCA5|167691|Leber congenital amaurosis 5##NM_181714|LCA5|167691|Leber congenital amaurosis 5##AK315391|HMGN3|9324|high mobility group nucleosomal binding domain 3##AY043282|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201362|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_001201363|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_004242|HMGN3|9324|high mobility group nucleosomal binding domain 3##NM_138730|HMGN3|9324|high mobility group nucleosomal binding domain 3##L40357|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF401520|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF274949|HMGN3|9324|high mobility group nucleosomal binding domain 3##BC009529|HMGN3|9324|high mobility group nucleosomal binding domain 3##AF340151|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_031469|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109043|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC109044|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK311757|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC040489|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AK074506|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC052987|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC060799|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##BC070059|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##AJ297972|SH3BGRL2|83699|SH3 domain binding glutamic acid-rich protein like 2##NM_001243308|C6orf7|89758|chromosome 6 open reading frame 7##DQ891229|ELOVL4|6785|ELOVL fatty acid elongase 4##AF277094|ELOVL4|6785|ELOVL fatty acid elongase 4##BC038506|ELOVL4|6785|ELOVL fatty acid elongase 4##AY037298|ELOVL4|6785|ELOVL fatty acid elongase 4##AK310625|ELOVL4|6785|ELOVL fatty acid elongase 4##AK312511|ELOVL4|6785|ELOVL fatty acid elongase 4##AK055277|ELOVL4|6785|ELOVL fatty acid elongase 4##DQ426871|ELOVL4|6785|ELOVL fatty acid elongase 4##NM_022726|ELOVL4|6785|ELOVL fatty acid elongase 4	1.990292	0.0	denovo_WM_7:75:0.243	denovo_WM_7:76:0.210	denovo_WM_7:95:0.204	denovo_WM_7:96:0.238
chr8	38822290	38822469	reg1007939.p1	5.071	+	AK098787 NM_021623 TSC_hg19_v1_chr8_+_38758793 AK296068 AK291842 AF286164	-63568	+	TSC_hg19_v1_chr8_+_38644754 AF049910 AY177411	-177611	+	AK314620 NM_001122824 NM_006283 TSC_hg19_v1_chr8_+_38644722	-177657	+	NM_153692 AK075205 BC057765 AK300197	9330	+	AL834224 BC004878 BC109050 BC109049 AF353991 AK075027 TSC_hg19_v1_chr8_-_38854016 AK225093	31633	-	TSC_hg19_v1_chr8_-_38854029 AK314703 AK075155 NM_001024380 NM_001024381 NM_031940 NM_078473	31653	-	AK098787|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##NM_021623|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AK296068|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AK291842|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AF286164|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AF049910|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AY177411|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AK314620|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_001122824|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_006283|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_153692|HTRA4|203100|HtrA serine peptidase 4##AK075205|HTRA4|203100|HtrA serine peptidase 4##BC057765|HTRA4|203100|HtrA serine peptidase 4##AK300197|HTRA4|203100|HtrA serine peptidase 4##AL834224|TM2D2|83877|TM2 domain containing 2##BC004878|TM2D2|83877|TM2 domain containing 2##BC109050|TM2D2|83877|TM2 domain containing 2##BC109049|TM2D2|83877|TM2 domain containing 2##AF353991|TM2D2|83877|TM2 domain containing 2##AK075027|TM2D2|83877|TM2 domain containing 2##AK225093|TM2D2|83877|TM2 domain containing 2##AK314703|TM2D2|83877|TM2 domain containing 2##AK075155|TM2D2|83877|TM2 domain containing 2##NM_001024380|TM2D2|83877|TM2 domain containing 2##NM_001024381|TM2D2|83877|TM2 domain containing 2##NM_031940|TM2D2|83877|TM2 domain containing 2##NM_078473|TM2D2|83877|TM2 domain containing 2	2.654806	0.0	denovo_WM_7:-1:0.717	denovo_WM_7:-2:0.266	denovo_WM_7:13:0.853	denovo_WM_7:-29:0.467
chr14	24658087	24658213	reg1009928.p1	5.070	+	TSC_hg19_v1_chr14_-_24658018 AB208897 AK302097 AK094107 BC110804 AK095306 AK056527 AK057277 BC136759 BC144399 BC144400 NM_024658	-84	-	TSC_hg19_v1_chr14_-_24658004 AF411122 AK057044 AK056702 AK094897 AK314305 BX248267	-153	-	TSC_hg19_v1_chr14_+_24641288 AK001435 NM_001048205 NM_005132 BC010887 AL832973	-16877	+	TSC_hg19_v1_chr14_-_24664634 AK292110	6496	-	TSC_hg19_v1_chr14_-_24664891 BX161494 AK304642 BX161390 NM_001014842 NM_006405	6698	-	BC029918 AK131042 NM_001184739 NM_174944 BC111088 AY461663	16781	+	AB208897|IPO4|79711|importin 4##AK302097|IPO4|79711|importin 4##AK094107|IPO4|79711|importin 4##BC110804|IPO4|79711|importin 4##AK095306|IPO4|79711|importin 4##AK056527|IPO4|79711|importin 4##AK057277|IPO4|79711|importin 4##BC136759|IPO4|79711|importin 4##BC144399|IPO4|79711|importin 4##BC144400|IPO4|79711|importin 4##NM_024658|IPO4|79711|importin 4##AF411122|IPO4|79711|importin 4##AK057044|IPO4|79711|importin 4##AK056702|IPO4|79711|importin 4##AK094897|IPO4|79711|importin 4##AK314305|IPO4|79711|importin 4##BX248267|IPO4|79711|importin 4##AK001435|REC8|9985|REC8 homolog (yeast)##NM_001048205|REC8|9985|REC8 homolog (yeast)##NM_005132|REC8|9985|REC8 homolog (yeast)##BC010887|REC8|9985|REC8 homolog (yeast)##AL832973|REC8|9985|REC8 homolog (yeast)##AK292110|TM9SF1|10548|transmembrane 9 superfamily member 1##BX161494|TM9SF1|10548|transmembrane 9 superfamily member 1##AK304642|TM9SF1|10548|transmembrane 9 superfamily member 1##BX161390|TM9SF1|10548|transmembrane 9 superfamily member 1##NM_001014842|TM9SF1|10548|transmembrane 9 superfamily member 1##NM_006405|TM9SF1|10548|transmembrane 9 superfamily member 1##BC029918|TSSK4|283629|testis-specific serine kinase 4##AK131042|TSSK4|283629|testis-specific serine kinase 4##NM_001184739|TSSK4|283629|testis-specific serine kinase 4##NM_174944|TSSK4|283629|testis-specific serine kinase 4##BC111088|TSSK4|283629|testis-specific serine kinase 4##AY461663|TSSK4|283629|testis-specific serine kinase 4	0.0	0.0	
chr1	44121912	44122026	reg1007755.p1	5.070	+	BC002558 TSC_hg19_v1_chr1_+_44115828 AB014577	-6125	+	AK300039 TSC_hg19_v1_chr1_+_44115819	-6158	+	TSC_hg19_v1_chr1_+_44115796 NM_014663	-6170	+	TSC_hg19_v1_chr1_-_44173037 BC094867	51054	-	AK301829 AY051143 NM_006279 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 TSC_hg19_v1_chr1_+_44173217 BC050380	51249	+	AF120274 NM_001136215 NM_057090 NM_057091	277022	+	BC002558|KDM4A|9682|lysine (K)-specific demethylase 4A##AB014577|KDM4A|9682|lysine (K)-specific demethylase 4A##AK300039|KDM4A|9682|lysine (K)-specific demethylase 4A##NM_014663|KDM4A|9682|lysine (K)-specific demethylase 4A##BC094867|LOC100132774|100132774|uncharacterized LOC100132774##AK301829|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AY051143|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_006279|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174963|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174964|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174965|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174966|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174967|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174968|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174969|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174970|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174971|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC050380|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AF120274|ARTN|9048|artemin##NM_001136215|ARTN|9048|artemin##NM_057090|ARTN|9048|artemin##NM_057091|ARTN|9048|artemin	1.202273	0.0	denovo_WM_7:35:0.208	denovo_WM_7:50:0.275
chr15	40388460	40388588	reg1002403.p2	5.070	+	TSC_hg19_v1_chr15_+_40331506 AK127696	-57046	+	AB451391 CU690086 TSC_hg19_v1_chr15_-_40331370 X73459 BC071716 U07857 BC100031 BC035495 BC051006 AB061546 NM_003134	-57172	-	TSC_hg19_v1_chr15_+_40294764 AK074361	-93728	+	AB590060 AY029254 AY222040 AY222041 CU686755 CU686862 NM_001003942 NM_001003943	9762	-	BC104983 BC104985 BC069328 BC069505 NM_033503 AK024472	10086	-	TSC_hg19_v1_chr15_-_40401076 BC060783 BC070043 NM_001003940	12571	-	AK127696|LOC100131089|100131089|uncharacterized LOC100131089##AB451391|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##X73459|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC071716|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##U07857|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC100031|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC035495|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##BC051006|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##AB061546|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##NM_003134|SRP14|6727|signal recognition particle 14kDa (homologous Alu RNA binding protein)##AK074361|EIF2AK4|440275|eukaryotic translation initiation factor 2 alpha kinase 4##AY029254|BMF|90427|Bcl2 modifying factor##AY222040|BMF|90427|Bcl2 modifying factor##AY222041|BMF|90427|Bcl2 modifying factor##NM_001003942|BMF|90427|Bcl2 modifying factor##NM_001003943|BMF|90427|Bcl2 modifying factor##BC104983|BMF|90427|Bcl2 modifying factor##BC104985|BMF|90427|Bcl2 modifying factor##BC069328|BMF|90427|Bcl2 modifying factor##BC069505|BMF|90427|Bcl2 modifying factor##NM_033503|BMF|90427|Bcl2 modifying factor##AK024472|BMF|90427|Bcl2 modifying factor##BC060783|BMF|90427|Bcl2 modifying factor##BC070043|BMF|90427|Bcl2 modifying factor##NM_001003940|BMF|90427|Bcl2 modifying factor	0.0	0.0	
chr7	120001190	120001346	reg1009037.p2	5.070	+	AK307139 AB028967 NM_012281	-87564	+	NM_019644 AK302407	-2136534	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-2177097	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	496752	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	496892	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	589613	+	AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3	0.0	0.0	
chr1	161008854	161009034	reg1006725.p1	5.069	+	AF111713 TSC_hg19_v1_chr1_-_161008767 NM_001113205 NM_001113206 NM_001113207 AK299487	-186	-	AF191495 TSC_hg19_v1_chr1_-_161008713 BC001699 BC038219	-230	-	TSC_hg19_v1_chr1_-_160990981 NM_016946	-17893	-	AK314876 BC035505 TSC_hg19_v1_chr1_-_161015745	6773	-	TSC_hg19_v1_chr1_-_161015769 NM_007122 NM_207005	6823	-	TSC_hg19_v1_chr1_-_161039466 AB463226 BC053688 BC025732	30523	-	NM_001113205|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113206|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113207|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##AK299487|F11R|50848|F11 receptor##BC001699|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##BC038219|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_016946|F11R|50848|F11 receptor##AK314876|USF1|7391|upstream transcription factor 1##BC035505|USF1|7391|upstream transcription factor 1##NM_007122|USF1|7391|upstream transcription factor 1##NM_207005|USF1|7391|upstream transcription factor 1##BC053688|ARHGAP30|257106|Rho GTPase activating protein 30##BC025732|ARHGAP30|257106|Rho GTPase activating protein 30	0.012398	0.0	
chr17	618069	618196	reg1002601.p1	5.069	+	CU675257 EU021218 EU434648 EU434649 EU434650 AF246287 AY444797 BC006116 TSC_hg19_v1_chr17_-_618080 BC040223 AF318335 AK290343 AK092532 AX747587 NM_001128159 NM_018289	-93	-	TSC_hg19_v1_chr17_+_260159 AK128660 NM_001013672 BC141806 BC057385 BC070116 CU687042	-357952	+	TSC_hg19_v1_chr17_-_202619 NM_001190411 NM_001190412 NM_001190413 NM_006987	-415508	-	TSC_hg19_v1_chr17_+_635806 AF477201 BC026023 AK025935 AK292065 NM_024792 CU693104 AK125146	17654	+	TSC_hg19_v1_chr17_-_655412 AB463052 AF173856 BC036024 AK302722 BC032084 BC020062	37288	-	TSC_hg19_v1_chr17_-_655502 NM_015721	37353	-	EU021218|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434648|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434649|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##EU434650|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF246287|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AY444797|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##BC006116|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##BC040223|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AF318335|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK290343|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK092532|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##NM_001128159|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##NM_018289|VPS53|55275|vacuolar protein sorting 53 homolog (S. cerevisiae)##AK128660|C17orf97|400566|chromosome 17 open reading frame 97##NM_001013672|C17orf97|400566|chromosome 17 open reading frame 97##BC141806|C17orf97|400566|chromosome 17 open reading frame 97##BC057385|C17orf97|400566|chromosome 17 open reading frame 97##BC070116|C17orf97|400566|chromosome 17 open reading frame 97##NM_001190411|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_001190412|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_001190413|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##NM_006987|RPH3AL|9501|rabphilin 3A-like (without C2 domains)##AF477201|FAM57A|79850|family with sequence similarity 57, member A##BC026023|FAM57A|79850|family with sequence similarity 57, member A##AK025935|FAM57A|79850|family with sequence similarity 57, member A##AK292065|FAM57A|79850|family with sequence similarity 57, member A##NM_024792|FAM57A|79850|family with sequence similarity 57, member A##AK125146|FAM57A|79850|family with sequence similarity 57, member A##AF173856|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC036024|GEMIN4|50628|gem (nuclear organelle) associated protein 4##AK302722|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC032084|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC020062|GEMIN4|50628|gem (nuclear organelle) associated protein 4##NM_015721|GEMIN4|50628|gem (nuclear organelle) associated protein 4	0.0	0.0	
chr5	77175149	77175282	reg1002872.p1	5.069	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-103083	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-240701	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-240786	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	415210	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	415262	-	TSC_hg19_v1_chr5_-_77590495 U81504	415277	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.973873	0.0	denovo_WM_7:-17:0.650	denovo_WM_7:-18:0.280
chr15	96407452	96407611	reg1001944.p1	5.068	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-537212	-	NM_001159644 BC025708 BC111024 AK002037	-1508222	+	NM_001159643 NM_018349 AY656717 BC131527	-1566070	+	BC106083 NM_001145155 FM208183	461630	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	466446	+	AK316086 NM_001145156	468262	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	1.062865	0.0	denovo_WM_7:-73:0.238	denovo_WM_7:-74:0.238	denovo_WM_7:-75:0.238	denovo_WM_7:-76:0.238
chr1	8788504	8788684	reg1010656.p2	5.068	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-304577	-	NM_001080397	-404205	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-702196	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	88998	-	GU170215 NM_001201483	143040	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	150113	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	1.0037	0.0	denovo_WM_7:-63:0.312	denovo_WM_7:-65:0.595
chr3	17089492	17089602	reg1006006.p1	5.068	+	BC036392 NM_015184	-114966	+	AB029015 NM_001144382	-163096	+	U65918 U66726 U66078 BC027595 NM_001351	-442581	-	AK310539 NM_001134381	651964	-	D86965 NM_014744	692851	-	TSC_hg19_v1_chr3_-_17784106 NM_001134380	694620	-	BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##NM_001134380|TBC1D5|9779|TBC1 domain family, member 5	0.99682	0.0	denovo_WM_7:36:0.710	denovo_WM_7:37:0.275
chr4	101941293	101941441	reg1009102.p2	5.068	+	CU676062 AB590686 AB034695 AK222741 AK304568 AK291831 BC017781 AF205940 AK026875 AK313504 NM_001159694 NM_016242	-502207	-	AL832277 BC013592 TSC_hg19_v1_chr4_-_101111626 AK312926 AK094236 NM_145244	-829737	-	TSC_hg19_v1_chr4_+_100871641 AK123926	-1069721	+	AB385587 AB451338 AB451487 AM393486 AM393713 CU693026 AY904364 BC025714 TSC_hg19_v1_chr4_-_102268080 L14778	326659	-	TSC_hg19_v1_chr4_-_102268343 AL353950	327005	-	AK290532 TSC_hg19_v1_chr4_-_102268547	327148	-	AB034695|EMCN|51705|endomucin##AK222741|EMCN|51705|endomucin##AK304568|EMCN|51705|endomucin##AK291831|EMCN|51705|endomucin##BC017781|EMCN|51705|endomucin##AF205940|EMCN|51705|endomucin##AK026875|EMCN|51705|endomucin##AK313504|EMCN|51705|endomucin##NM_001159694|EMCN|51705|endomucin##NM_016242|EMCN|51705|endomucin##AL832277|DDIT4L|115265|DNA-damage-inducible transcript 4-like##BC013592|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK312926|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK094236|DDIT4L|115265|DNA-damage-inducible transcript 4-like##NM_145244|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK123926|LOC256880|256880|uncharacterized LOC256880##AB451338|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AB451487|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393486|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393713|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AY904364|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##BC025714|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##L14778|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AL353950|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AK290532|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme	0.99983	0.0	denovo_WM_7:-16:0.419	denovo_WM_7:-17:0.419
chr8	126230029	126230198	reg1008030.p1	5.068	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-126016	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-126056	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-126091	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	212466	+	TSC_hg19_v1_chr8_-_126963395 BX648371	733300	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1340442	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.979052	0.0	denovo_WM_7:15:0.653
chr12	94434013	94434146	reg1008089.p1	5.067	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-362896	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-468478	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-469259	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	108425	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	419452	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	419563	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	0.999178	0.0	denovo_WM_7:27:0.239	denovo_WM_7:28:0.239	denovo_WM_7:29:0.239	denovo_WM_7:30:0.239
chr14	77841642	77841761	reg1009258.p1	5.067	+	NM_001513	-53996	+	NM_145870 NM_145871 AK315154 BC001453 TSC_hg19_v1_chr14_+_77787378 AK309054 AK315609 BC052245 BC069047 AJ001838 U86529 CR456987	-54331	+	CU689220 AB209114 BC031651 TSC_hg19_v1_chr14_-_77787215 BX248027 AF105020 AY090480 NM_013382	-54571	-	AY598329 NM_213601 TSC_hg19_v1_chr14_-_77843438 AK095650 BC101510	1725	-	BC104834 BC104836 AK093282 NM_001010860	2050	+	CU688228 BC066965 AK057371 NM_001113475	47613	-	NM_001513|GSTZ1|2954|glutathione transferase zeta 1##NM_145870|GSTZ1|2954|glutathione transferase zeta 1##NM_145871|GSTZ1|2954|glutathione transferase zeta 1##AK315154|GSTZ1|2954|glutathione transferase zeta 1##BC001453|GSTZ1|2954|glutathione transferase zeta 1##AK309054|GSTZ1|2954|glutathione transferase zeta 1##AK315609|GSTZ1|2954|glutathione transferase zeta 1##BC052245|GSTZ1|2954|glutathione transferase zeta 1##AJ001838|GSTZ1|2954|glutathione transferase zeta 1##U86529|GSTZ1|2954|glutathione transferase zeta 1##CR456987|GSTZ1|2954|glutathione transferase zeta 1##AB209114|POMT2|29954|protein-O-mannosyltransferase 2##BC031651|POMT2|29954|protein-O-mannosyltransferase 2##BX248027|POMT2|29954|protein-O-mannosyltransferase 2##AF105020|POMT2|29954|protein-O-mannosyltransferase 2##AY090480|POMT2|29954|protein-O-mannosyltransferase 2##NM_013382|POMT2|29954|protein-O-mannosyltransferase 2##AY598329|TMED8|283578|transmembrane emp24 protein transport domain containing 8##NM_213601|TMED8|283578|transmembrane emp24 protein transport domain containing 8##AK095650|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC101510|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC104834|SAMD15|161394|sterile alpha motif domain containing 15##BC104836|SAMD15|161394|sterile alpha motif domain containing 15##AK093282|SAMD15|161394|sterile alpha motif domain containing 15##NM_001010860|SAMD15|161394|sterile alpha motif domain containing 15##BC066965|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##AK057371|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##NM_001113475|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1	0.0	0.0	
chr18	25748762	25748905	reg1009561.p1	5.067	+	AF239821 BC025764 TSC_hg19_v1_chr18_-_24765254 AY358488 NM_031422	-983600	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	-1025954	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	-1303117	-	TSC_hg19_v1_chr18_-_25757095 AB384981 EU832318 EU832403 X54315 BC036470	8204	-	TSC_hg19_v1_chr18_-_25757363 NM_001792	8564	-	TSC_hg19_v1_chr18_-_28622624 X83929 D17427 AK291748 NM_001941 NM_024423	2873869	-	AF239821|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##BC025764|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AY358488|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_031422|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##EU832318|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832403|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X54315|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##BC036470|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##NM_001792|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X83929|DSC3|1825|desmocollin 3##D17427|DSC3|1825|desmocollin 3##AK291748|DSC3|1825|desmocollin 3##NM_001941|DSC3|1825|desmocollin 3##NM_024423|DSC3|1825|desmocollin 3	0.853149	0.0	denovo_WM_7:-49:0.790
chr18	31421550	31421715	reg1008416.p1	5.067	+	AB051500 TSC_hg19_v1_chr18_+_31319257	-102426	+	NM_030632 AK131454	-263073	+	BX648108 TSC_hg19_v1_chr18_-_31158297	-263403	-	AK296539 NM_001198549	206934	-	NM_001198547	380801	-	AK297185 BC000313 TSC_hg19_v1_chr18_-_31803319	381611	-	AB051500|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_030632|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK131454|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK296539|NOL4|8715|nucleolar protein 4##NM_001198549|NOL4|8715|nucleolar protein 4##NM_001198547|NOL4|8715|nucleolar protein 4##AK297185|NOL4|8715|nucleolar protein 4##BC000313|NOL4|8715|nucleolar protein 4	0.985253	0.0	denovo_WM_7:-10:0.439
chr20	52634784	52634942	reg1003714.p4	5.067	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-424064	-	AF041259 NM_006526	-435228	-	AK302570 NM_001193421	-833042	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	52199	-	AK315220 NM_003657	52440	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	155657	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.01499	0.0	denovo_WM_7:85:0.307	denovo_WM_7:86:0.307	denovo_WM_7:87:0.307
chr5	32545824	32545985	reg1006626.p2	5.067	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-100968	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-101126	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-142551	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	39752	+	NM_001204376 AK300094 AK308301	164846	+	AK290870 NM_000908 NM_001204375 M59305	165584	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	1.808021	0.0	denovo_WM_7:43:0.805	denovo_WM_7:58:0.436	denovo_WM_7:59:0.449
chr8	8308565	8308728	reg1007985.p1	5.066	+	AK122582 NM_001080826	-69424	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-132758	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-222504	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	251052	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	442292	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	551719	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	1.369819	0.0	denovo_WM_7:66:0.407	denovo_WM_7:-91:0.755
chr9	95791161	95791316	reg1010818.p2	5.066	+	NM_033086 BX647829 BC111054 AY211386	-54489	+	NM_001083536	-81638	+	AK299274 TSC_hg19_v1_chr9_-_95640325 AK091203 AX746846 NM_001007101 AL833202 NM_031486 AK292997 AK309617	-150961	-	TSC_hg19_v1_chr9_+_95820982 BC014601 NM_145006	29738	+	TSC_hg19_v1_chr9_+_95821007 CU677063 DQ894024 EU176188 AY358190	29786	+	NM_032310 TSC_hg19_v1_chr9_+_95858498 AK057716 AK091611 AX747094 BC042201 BC038856 BC004500	67242	+	NM_033086|FGD3|89846|FYVE, RhoGEF and PH domain containing 3##BX647829|FGD3|89846|FYVE, RhoGEF and PH domain containing 3##BC111054|FGD3|89846|FYVE, RhoGEF and PH domain containing 3##AY211386|FGD3|89846|FYVE, RhoGEF and PH domain containing 3##NM_001083536|FGD3|89846|FYVE, RhoGEF and PH domain containing 3##AK299274|ZNF484|83744|zinc finger protein 484##AK091203|ZNF484|83744|zinc finger protein 484##NM_001007101|ZNF484|83744|zinc finger protein 484##AL833202|ZNF484|83744|zinc finger protein 484##NM_031486|ZNF484|83744|zinc finger protein 484##AK292997|ZNF484|83744|zinc finger protein 484##AK309617|ZNF484|83744|zinc finger protein 484##BC014601|SUSD3|203328|sushi domain containing 3##NM_145006|SUSD3|203328|sushi domain containing 3##DQ894024|SUSD3|203328|sushi domain containing 3##EU176188|SUSD3|203328|sushi domain containing 3##AY358190|SUSD3|203328|sushi domain containing 3##NM_032310|C9orf89|84270|chromosome 9 open reading frame 89##AK057716|C9orf89|84270|chromosome 9 open reading frame 89##AK091611|C9orf89|84270|chromosome 9 open reading frame 89##BC042201|C9orf89|84270|chromosome 9 open reading frame 89##BC038856|C9orf89|84270|chromosome 9 open reading frame 89##BC004500|C9orf89|84270|chromosome 9 open reading frame 89	1.98971	0.0	
chr17	63563777	63563957	reg1004923.p2	5.065	+	CR933657 TSC_hg19_v1_chr17_-_63557767	-6099	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	-6188	-	BC006295 TSC_hg19_v1_chr17_-_63556453	-7392	-	BC029524 NM_001037325	258793	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	624314	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	661658	-	CR933657|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##BC006295|AXIN2|8313|axin 2##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)	0.0	0.0	
chr22	25962903	25963018	reg1007093.p2	5.065	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	-2014	+	TSC_hg19_v1_chr22_+_25960802 BC036797 NM_005160	-2161	+	TSC_hg19_v1_chr22_+_25844071 BC047380 BC037884	-118884	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	175160	+	TSC_hg19_v1_chr22_+_26138168 AY077700	175224	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	602477	+	BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC036797|ADRBK2|157|adrenergic, beta, receptor kinase 2##NM_005160|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC047380|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC037884|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB##AY077700|MYO18B|84700|myosin XVIIIB##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like	0.606435	0.0	denovo_WM_7:-31:0.606
chr22	43176233	43176387	reg1011239.p1	5.065	+	TSC_hg19_v1_chr22_-_43117270 AK312927	-59033	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	-59455	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	-86403	-	TSC_hg19_v1_chr22_-_43253228 CU012940 CU013228 CU674999 DQ893007 DQ896253 CR456382 BC005122	76901	-	TSC_hg19_v1_chr22_-_43253280 AF111847 AK307967 AK315720 AL159143 AK300531 AK297635	76960	-	TSC_hg19_v1_chr22_-_43253305 NM_001142293 NM_014570	77045	-	AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##CU012940|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CU013228|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ893007|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ896253|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CR456382|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##BC005122|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AF111847|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK307967|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK315720|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AL159143|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK300531|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK297635|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_001142293|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_014570|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3	0.0	0.975465	CTCF.p2:-35:0.975
chrX	148877576	148877756	reg1007824.p2	5.065	+	AK292272 AK313321 NM_001080790 BC002351 NM_005365	-14071	+	NM_001164415 NM_016153	-21941	+	NM_005366 AY747607 BC004479	-83897	+	AK313943 NM_001166400 NM_001166401 NM_005364 BC002455 BC012744	132304	+	L43575 TSC_hg19_v1_chrX_-_149106661 U66042 NM_001013845	229016	-	TSC_hg19_v1_chrX_+_149529838 AK302612	652167	+	AK292272|MAGEA9|4108|melanoma antigen family A, 9##AK313321|MAGEA9|4108|melanoma antigen family A, 9##NM_001080790|MAGEA9B|728269|melanoma antigen family A, 9B##BC002351|MAGEA9|4108|melanoma antigen family A, 9##NM_005365|MAGEA9|4108|melanoma antigen family A, 9##NM_001164415|HSFX2|100130086|heat shock transcription factor family, X linked 2##NM_016153|HSFX1|100506164|heat shock transcription factor family, X linked 1##NM_005366|MAGEA11|4110|melanoma antigen family A, 11##AY747607|MAGEA11|4110|melanoma antigen family A, 11##BC004479|MAGEA11|4110|melanoma antigen family A, 11##AK313943|MAGEA8|4107|melanoma antigen family A, 8##NM_001166400|MAGEA8|4107|melanoma antigen family A, 8##NM_001166401|MAGEA8|4107|melanoma antigen family A, 8##NM_005364|MAGEA8|4107|melanoma antigen family A, 8##BC002455|MAGEA8|4107|melanoma antigen family A, 8##BC012744|MAGEA8|4107|melanoma antigen family A, 8##L43575|CXorf40B|541578|chromosome X open reading frame 40B##U66042|CXorf40B|541578|chromosome X open reading frame 40B##NM_001013845|CXorf40B|541578|chromosome X open reading frame 40B##AK302612|MAMLD1|10046|mastermind-like domain containing 1	0.994971	0.0	denovo_WM_7:40:0.969
chr17	18654453	18654559	reg1009615.p1	5.064	+	NM_031456 BC028364 AK310383 AL136822	-7150	+	AK301647 DQ232882 NM_001037330 AK316368 AK301639 AK298836 BC146902 BC146907	-29090	+	NM_001145045	-68935	-	TSC_hg19_v1_chr17_+_18684595 BC008430 NM_016078 AK290813 BX537929 BX648167	30096	+	NM_001243936 NM_001243942 TSC_hg19_v1_chr17_+_18759671 BX648850 AK303911	105135	+	NM_001243941 NM_002767 TSC_hg19_v1_chr17_+_18761443 AK313087	106906	+	NM_031456|FBXW10|10517|F-box and WD repeat domain containing 10##BC028364|FBXW10|10517|F-box and WD repeat domain containing 10##AK310383|FBXW10|10517|F-box and WD repeat domain containing 10##AL136822|FBXW10|10517|F-box and WD repeat domain containing 10##AK301647|TRIM16L|147166|tripartite motif containing 16-like##DQ232882|TRIM16L|147166|tripartite motif containing 16-like##NM_001037330|TRIM16L|147166|tripartite motif containing 16-like##AK316368|TRIM16L|147166|tripartite motif containing 16-like##AK301639|TRIM16L|147166|tripartite motif containing 16-like##AK298836|TRIM16L|147166|tripartite motif containing 16-like##BC146902|TRIM16L|147166|tripartite motif containing 16-like##BC146907|TRIM16L|147166|tripartite motif containing 16-like##NM_001145045|ZNF286B|729288|zinc finger protein 286B##BC008430|FAM18B1|51030|family with sequence similarity 18, member B1##NM_016078|FAM18B1|51030|family with sequence similarity 18, member B1##AK290813|FAM18B1|51030|family with sequence similarity 18, member B1##BX537929|FAM18B1|51030|family with sequence similarity 18, member B1##BX648167|FAM18B1|51030|family with sequence similarity 18, member B1##NM_001243936|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243942|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BX648850|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK303911|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243941|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_002767|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK313087|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2	0.999677	0.0	denovo_WM_7:39:0.419	denovo_WM_7:40:0.419
chrX	38186286	38186466	reg1010923.p1	5.064	+	TSC_hg19_v1_chrX_-_38080117 AB527644 CU676640 U61374 U78093 AK298802 AK289430 BC020684 AK293127 AK125542 NM_001170750 NM_001170751 NM_001170752 NM_006307	-106251	-	NM_001163334	-293590	+	BX647688 NM_001163335 NM_138780 TSC_hg19_v1_chrX_+_37865853 AK125106	-320526	+	X97668 CU689206 AJ238395 U57629 TSC_hg19_v1_chrX_-_38186763 BC031624 AK223491 DQ980616	319	-	TSC_hg19_v1_chrX_-_38186785 DQ426891 NM_000328 NM_001034853 DQ980617 AK291832	419	-	BC107153 BC107154 NM_000531 BC114496 AK292757 K02100 BC074745	25448	+	U61374|SRPX|8406|sushi-repeat containing protein, X-linked##U78093|SRPX|8406|sushi-repeat containing protein, X-linked##AK298802|SRPX|8406|sushi-repeat containing protein, X-linked##AK289430|SRPX|8406|sushi-repeat containing protein, X-linked##BC020684|SRPX|8406|sushi-repeat containing protein, X-linked##AK293127|SRPX|8406|sushi-repeat containing protein, X-linked##AK125542|SRPX|8406|sushi-repeat containing protein, X-linked##NM_001170750|SRPX|8406|sushi-repeat containing protein, X-linked##NM_001170751|SRPX|8406|sushi-repeat containing protein, X-linked##NM_001170752|SRPX|8406|sushi-repeat containing protein, X-linked##NM_006307|SRPX|8406|sushi-repeat containing protein, X-linked##NM_001163334|SYTL5|94122|synaptotagmin-like 5##BX647688|SYTL5|94122|synaptotagmin-like 5##NM_001163335|SYTL5|94122|synaptotagmin-like 5##NM_138780|SYTL5|94122|synaptotagmin-like 5##AK125106|SYTL5|94122|synaptotagmin-like 5##X97668|RPGR|6103|retinitis pigmentosa GTPase regulator##AJ238395|RPGR|6103|retinitis pigmentosa GTPase regulator##U57629|RPGR|6103|retinitis pigmentosa GTPase regulator##BC031624|RPGR|6103|retinitis pigmentosa GTPase regulator##AK223491|RPGR|6103|retinitis pigmentosa GTPase regulator##DQ980616|RPGR|6103|retinitis pigmentosa GTPase regulator##DQ426891|RPGR|6103|retinitis pigmentosa GTPase regulator##NM_000328|RPGR|6103|retinitis pigmentosa GTPase regulator##NM_001034853|RPGR|6103|retinitis pigmentosa GTPase regulator##AK291832|RPGR|6103|retinitis pigmentosa GTPase regulator##BC107153|OTC|5009|ornithine carbamoyltransferase##BC107154|OTC|5009|ornithine carbamoyltransferase##NM_000531|OTC|5009|ornithine carbamoyltransferase##BC114496|OTC|5009|ornithine carbamoyltransferase##AK292757|OTC|5009|ornithine carbamoyltransferase##K02100|OTC|5009|ornithine carbamoyltransferase##BC074745|OTC|5009|ornithine carbamoyltransferase	0.997862	0.0	denovo_WM_7:-55:0.738
chr12	90496597	90496777	reg1003516.p1	5.063	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-393142	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-394000	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-446836	-	BC026075 BC024183 BC027600 BC034491 NM_152638	852264	-	U59111 TSC_hg19_v1_chr12_-_91398750	902060	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	902092	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	1.598591	0.0	denovo_WM_7:70:0.383	denovo_WM_7:71:0.278	denovo_WM_7:86:0.492
chr14	69261362	69261487	reg1008725.p1	5.063	+	NM_001244698 NM_004926	-794	-	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	-1704	-	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-974904	+	NM_001244701 AB528867	1560	-	TSC_hg19_v1_chr14_-_69354901 BX641076	93515	-	BX248020 AK299362 TSC_hg19_v1_chr14_-_69444987	183562	-	NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BX641076|ACTN1|87|actinin, alpha 1##BX248020|ACTN1|87|actinin, alpha 1##AK299362|ACTN1|87|actinin, alpha 1	0.0	0.0	
chr15	72363503	72363643	reg1009703.p1	5.063	+	AF121129 NM_014249 NM_016346 AF148128	-260661	+	AK299056 AK303870 BX648716 TSC_hg19_v1_chr15_+_71839574 AY358143	-523993	+	NM_024817 BC140868	-929763	+	AK097557 NM_001166340	43025	+	NM_001172109 NM_001172110	45645	+	BC140869 BC144683 TSC_hg19_v1_chr15_-_72410212 AF117888	46592	-	AF121129|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_014249|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_016346|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AF148128|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AK299056|THSD4|79875|thrombospondin, type I, domain containing 4##AK303870|THSD4|79875|thrombospondin, type I, domain containing 4##BX648716|THSD4|79875|thrombospondin, type I, domain containing 4##AY358143|THSD4|79875|thrombospondin, type I, domain containing 4##NM_024817|THSD4|79875|thrombospondin, type I, domain containing 4##BC140868|THSD4|79875|thrombospondin, type I, domain containing 4##AK097557|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001166340|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172109|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172110|SENP8|123228|SUMO/sentrin specific peptidase family member 8##BC140869|MYO9A|4649|myosin IXA##BC144683|MYO9A|4649|myosin IXA##AF117888|MYO9A|4649|myosin IXA	0.012387	0.0	
chr20	52272234	52272378	reg1010961.p1	5.063	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-61507	-	AF041259 NM_006526	-72671	-	AK302570 NM_001193421	-470485	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	414756	-	AK315220 NM_003657	414997	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	518214	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.962273	0.0	denovo_WM_7:0:0.424	denovo_WM_7:-1:0.424	denovo_WM_7:29:0.599	denovo_WM_7:31:0.314
chr9	92686530	92686652	reg1007535.p2	5.063	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	-466610	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-573584	-	BC054500 NM_001142287 NM_006378	-591981	-	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	718528	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	877445	+	TSC_hg19_v1_chr9_+_93564068 Z29630 BC001645 BC002962	877476	+	NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase##Z29630|SYK|6850|spleen tyrosine kinase##BC001645|SYK|6850|spleen tyrosine kinase##BC002962|SYK|6850|spleen tyrosine kinase	0.555523	0.0	denovo_WM_7:-47:0.226	denovo_WM_7:-50:0.247
chrX	41236871	41236997	reg1009209.p1	5.063	+	AK304661 TSC_hg19_v1_chrX_+_41193866 AK127902	-43069	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	-43477	+	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	-44284	+	AJ278865 AF254868 NM_022567	69765	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	311333	+	BC070180 NM_080817 AK122626 AK313702 AL832460	346486	+	AK304661|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK127902|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AJ278865|NYX|60506|nyctalopin##AF254868|NYX|60506|nyctalopin##NM_022567|NYX|60506|nyctalopin##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82	0.998333	0.0	denovo_WM_7:-39:0.457	denovo_WM_7:-40:0.457
chr11	102790900	102790997	reg1003423.p1	5.062	+	AB590529 HQ258263 L23808 AK313959 BC112301 BC143773 NM_002426	-45234	-	DQ399598 CU686970 J03209 X05232 BC074815 BC074869 BC105954 BC107490 BC107491 AK313310 AK223283 AK223291 TSC_hg19_v1_chr11_-_102714339 BC069676 BC069716 NM_002422	-76652	-	TSC_hg19_v1_chr11_-_102668892 NM_001145938 NM_002421	-122020	-	AY256443 AY256444 HQ258010 X75308 BC067522 BC067523 BC074807 BC074808 AK315341 X81334 AK222748 AK292211 NM_002427	35499	-	AY364246 BC021074 TSC_hg19_v1_chr11_-_102962883 AK056993 BC004169	171793	-	TSC_hg19_v1_chr11_-_102962907 AK298227 NM_032299	171975	-	HQ258263|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##L23808|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##AK313959|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##BC112301|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##BC143773|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##NM_002426|MMP12|4321|matrix metallopeptidase 12 (macrophage elastase)##DQ399598|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##J03209|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##X05232|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC074815|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC074869|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC105954|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC107490|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC107491|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##AK313310|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##AK223283|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##AK223291|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC069676|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##BC069716|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##NM_002422|MMP3|4314|matrix metallopeptidase 3 (stromelysin 1, progelatinase)##NM_001145938|MMP1|4312|matrix metallopeptidase 1 (interstitial collagenase)##NM_002421|MMP1|4312|matrix metallopeptidase 1 (interstitial collagenase)##AY256443|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AY256444|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##HQ258010|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##X75308|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC067522|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC067523|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC074807|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##BC074808|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AK315341|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##X81334|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AK222748|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AK292211|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##NM_002427|MMP13|4322|matrix metallopeptidase 13 (collagenase 3)##AY364246|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC021074|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AK056993|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##BC004169|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##AK298227|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)##NM_032299|DCUN1D5|84259|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	0.279475	0.0	denovo_WM_7:70:0.266
chr11	64641775	64641879	reg1005353.p1	5.062	+	AY648038 NM_017525 TSC_hg19_v1_chr11_-_64612110	-29738	-	AJ297488 AJ297489 NM_130803 NM_130804	-63062	-	TSC_hg19_v1_chr11_-_64578206 NM_000244 NM_130799 U93236 AJ297487 NM_130802	-63633	-	TSC_hg19_v1_chr11_-_64645987 AB384808 AY007161	4155	-	TSC_hg19_v1_chr11_-_64646097 AK300326 AK312316 AK299096 AK098723 AK297654 BC104799 BC104825 AF099011 AF001434 NM_006795	4327	-	AK302930 TSC_hg19_v1_chr11_-_64647140 AK097842	5334	-	AY648038|CDC42BPG|55561|CDC42 binding protein kinase gamma (DMPK-like)##NM_017525|CDC42BPG|55561|CDC42 binding protein kinase gamma (DMPK-like)##AJ297488|MEN1|4221|multiple endocrine neoplasia I##AJ297489|MEN1|4221|multiple endocrine neoplasia I##NM_130803|MEN1|4221|multiple endocrine neoplasia I##NM_130804|MEN1|4221|multiple endocrine neoplasia I##NM_000244|MEN1|4221|multiple endocrine neoplasia I##NM_130799|MEN1|4221|multiple endocrine neoplasia I##U93236|MEN1|4221|multiple endocrine neoplasia I##AJ297487|MEN1|4221|multiple endocrine neoplasia I##NM_130802|MEN1|4221|multiple endocrine neoplasia I##AY007161|EHD1|10938|EH-domain containing 1##AK300326|EHD1|10938|EH-domain containing 1##AK312316|EHD1|10938|EH-domain containing 1##AK299096|EHD1|10938|EH-domain containing 1##AK098723|EHD1|10938|EH-domain containing 1##AK297654|EHD1|10938|EH-domain containing 1##BC104799|EHD1|10938|EH-domain containing 1##BC104825|EHD1|10938|EH-domain containing 1##AF099011|EHD1|10938|EH-domain containing 1##AF001434|EHD1|10938|EH-domain containing 1##NM_006795|EHD1|10938|EH-domain containing 1##AK302930|EHD1|10938|EH-domain containing 1##AK097842|EHD1|10938|EH-domain containing 1	0.998449	0.0	
chr19	1344452	1344632	reg1000073.p1	5.062	+	TSC_hg19_v1_chr19_+_1286081 AJ007292 NM_001405 AB463609	-58577	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	-68975	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	-73593	+	TSC_hg19_v1_chr19_+_1354979 NM_032853 AK310721 U20897	10459	+	TSC_hg19_v1_chr19_+_1383882 AK092169 AX747389 NM_024407 AK128713	39344	+	AK293917 AK297611 TSC_hg19_v1_chr19_+_1383902 AF115969 AK091623 AK127759 AX747100	39358	+	AJ007292|EFNA2|1943|ephrin-A2##NM_001405|EFNA2|1943|ephrin-A2##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_032853|MUM1|84939|melanoma associated antigen (mutated) 1##AK310721|MUM1|84939|melanoma associated antigen (mutated) 1##U20897|MUM1|84939|melanoma associated antigen (mutated) 1##AK092169|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##NM_024407|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK128713|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK293917|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AF115969|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK091623|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK127759|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)	0.0	0.0	
chr3	171517166	171517250	reg1009842.p1	5.062	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-339137	-	NM_000340	-772441	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-772675	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	11047	-	NM_001164436 AK026825	43940	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	240207	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	1.993071	0.0	denovo_WM_7:-43:0.298	denovo_WM_7:-44:0.364
chr7	120498039	120498184	reg1005831.p1	5.062	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	-91	-	AK307139 AB028967 NM_012281	-584407	+	NM_019644 AK302407	-2633377	+	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	49	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	92770	+	TSC_hg19_v1_chr7_+_120628742 NM_024913 AK289978 AL832619	130654	+	AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3##NM_024913|C7orf58|79974|chromosome 7 open reading frame 58##AK289978|C7orf58|79974|chromosome 7 open reading frame 58##AL832619|C7orf58|79974|chromosome 7 open reading frame 58	0.980334	0.0	denovo_WM_7:-49:0.421	denovo_WM_7:-50:0.421
chrX	119631908	119632018	reg1009183.p1	5.062	+	TSC_hg19_v1_chrX_-_119603160 BC002965 S79873 U36336 X77196 AK295038 NM_001122606 NM_002294 NM_013995	-28769	-	TSC_hg19_v1_chrX_-_119603152 AK291090 AK293931	-28818	-	TSC_hg19_v1_chrX_-_119603122 J04183	-28863	-	AY365125 AF212995 TSC_hg19_v1_chrX_-_119694635 AK123688	62619	-	TSC_hg19_v1_chrX_-_119694758 BX537787 BX647096 CR936722 NM_001079872	62804	-	TSC_hg19_v1_chrX_-_119694954 BX537641	62955	-	BC002965|LAMP2|3920|lysosomal-associated membrane protein 2##S79873|LAMP2|3920|lysosomal-associated membrane protein 2##U36336|LAMP2|3920|lysosomal-associated membrane protein 2##X77196|LAMP2|3920|lysosomal-associated membrane protein 2##AK295038|LAMP2|3920|lysosomal-associated membrane protein 2##NM_001122606|LAMP2|3920|lysosomal-associated membrane protein 2##NM_002294|LAMP2|3920|lysosomal-associated membrane protein 2##NM_013995|LAMP2|3920|lysosomal-associated membrane protein 2##AK291090|LAMP2|3920|lysosomal-associated membrane protein 2##AK293931|LAMP2|3920|lysosomal-associated membrane protein 2##J04183|LAMP2|3920|lysosomal-associated membrane protein 2##AY365125|CUL4B|8450|cullin 4B##AF212995|CUL4B|8450|cullin 4B##AK123688|CUL4B|8450|cullin 4B##BX537787|CUL4B|8450|cullin 4B##BX647096|CUL4B|8450|cullin 4B##CR936722|CUL4B|8450|cullin 4B##NM_001079872|CUL4B|8450|cullin 4B##BX537641|CUL4B|8450|cullin 4B	0.0	0.0	
chr1	205562794	205562974	reg1005390.p2	5.061	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	-24671	+	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	-24757	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-89062	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	38022	-	NM_001973 NM_021795	39115	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	86684	-	BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3	0.683118	0.0	denovo_WM_7:-83:0.633
chr1	235167944	235168051	reg1011107.p1	5.061	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-272223	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-422751	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-424139	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	124092	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	124234	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	156566	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	1.952328	0.0	denovo_WM_7:-74:0.852	denovo_WM_7:-92:0.205	denovo_WM_7:-93:0.259
chr3	7609054	7609234	reg1005522.p1	5.061	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-706246	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-706345	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-2379653	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	934186	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	934371	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	934437	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	0.0	0.0	
chr8	2556908	2557004	reg1003167.p1	5.061	+	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-563754	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-604048	+	TSC_hg19_v1_chr8_+_1950340 BC169332	-606604	+	AK128880 TSC_hg19_v1_chr8_-_2585966	29026	-	AY017307 TSC_hg19_v1_chr8_-_4852228	2295269	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	2295338	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##BC169332|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	0.289009	0.0	
chr15	40078851	40078938	reg1007233.p1	5.060	+	AK091251 TSC_hg19_v1_chr15_+_40075106	-3788	+	AK093308 AX748045 BC045191 NM_152597	-3866	-	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	-205565	+	CU688250 TSC_hg19_v1_chr15_-_40212342	133391	-	BC067106 TSC_hg19_v1_chr15_-_40212465	133594	-	TSC_hg19_v1_chr15_-_40213138 D38449 NM_007223	134233	-	AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##BC067106|GPR176|11245|G protein-coupled receptor 176##D38449|GPR176|11245|G protein-coupled receptor 176##NM_007223|GPR176|11245|G protein-coupled receptor 176	0.0	0.961768	CTCF.p2:-18:0.962
chr2	240322646	240322746	reg1011021.p2	5.060	+	TSC_hg19_v1_chr2_-_240322657 AB006626 NM_006037	-48	-	BC033168 NM_057179 BC103755 BC017907 AB528459 CU689614	-565933	+	TSC_hg19_v1_chr2_+_239335693 AF156777	-987007	+	TSC_hg19_v1_chr2_-_240322695 BC039904	2	-	TSC_hg19_v1_chr2_-_240323341 AK308791	652	-	AF453834 TSC_hg19_v1_chr2_-_240964750 CU678462 DQ891011 DQ894191 BC031332 AF087661 AB209440 AK290778 BC003417 AF087854	642065	-	AB006626|HDAC4|9759|histone deacetylase 4##NM_006037|HDAC4|9759|histone deacetylase 4##BC033168|TWIST2|117581|twist homolog 2 (Drosophila)##NM_057179|TWIST2|117581|twist homolog 2 (Drosophila)##BC103755|TWIST2|117581|twist homolog 2 (Drosophila)##BC017907|TWIST2|117581|twist homolog 2 (Drosophila)##AF156777|ASB1|51665|ankyrin repeat and SOCS box containing 1##BC039904|HDAC4|9759|histone deacetylase 4##AK308791|HDAC4|9759|histone deacetylase 4##AF453834|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ891011|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ894191|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC031332|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087661|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AB209440|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK290778|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC003417|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087854|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa	0.0	0.0	
chr6	116437102	116437188	reg1008545.p1	5.059	+	AK097758 TSC_hg19_v1_chr6_-_116422450	-14715	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	-15136	+	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	-55263	-	BC130621 BC130623 NM_000493	10115	-	AB385375 BC040453 TSC_hg19_v1_chr6_-_116575239 AB018264 NM_021648 AK302542 AK091559	138090	-	AK026849 TSC_hg19_v1_chr6_-_116600165	163005	-	NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##BC130621|COL10A1|1300|collagen, type X, alpha 1##BC130623|COL10A1|1300|collagen, type X, alpha 1##NM_000493|COL10A1|1300|collagen, type X, alpha 1##BC040453|TSPYL4|23270|TSPY-like 4##AB018264|TSPYL4|23270|TSPY-like 4##NM_021648|TSPYL4|23270|TSPY-like 4##AK302542|TSPYL4|23270|TSPY-like 4##AK091559|TSPYL4|23270|TSPY-like 4##AK026849|TSPYL1|7259|TSPY-like 1	1.121254	0.419175	CTCF.p2:14:0.419	denovo_WM_7:-18:0.677
chr3	46995043	46995222	reg1009704.p1	5.058	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-71390	+	BC112221 BC112247 NM_000316 U17418 X68596	-75883	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-90207	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	23113	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	26115	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	34338	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.99944	0.0	denovo_WM_7:14:0.235	denovo_WM_7:15:0.235	denovo_WM_7:16:0.235	denovo_WM_7:17:0.235
chr4	185276186	185276366	reg1007631.p1	5.058	+	BC035035 AY358676 AK057370 NM_153343	-137211	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-448365	+	TSC_hg19_v1_chr4_+_184827807 AK289840	-448456	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	119405	-	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	294325	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	294557	+	BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK289840|STOX2|56977|storkhead box 2##X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111	0.0	0.01618	
chr6	2861734	2861902	reg1011509.p1	5.058	+	TSC_hg19_v1_chr6_-_2842202 AK304641 AK309765	-19621	-	TSC_hg19_v1_chr6_-_2842095 BC009015 NM_030666 M93056 AK298044 AK312973 AK223370 AK291327	-19736	-	TSC_hg19_v1_chr6_-_2840686 BT006928 AB590702	-21066	-	TSC_hg19_v1_chr6_-_2903544 BC002538 AB060690 L40378 AK314842 NM_004155	41690	-	AK098566 TSC_hg19_v1_chr6_-_2971511	109596	-	Z22658 TSC_hg19_v1_chr6_-_2971802 BC098564	109993	-	AK304641|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK309765|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC009015|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##NM_030666|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##M93056|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK298044|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK312973|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK223370|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK291327|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BT006928|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC002538|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AB060690|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##L40378|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK314842|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##NM_004155|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK098566|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##Z22658|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##BC098564|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6	0.0	0.0	
chr10	64388751	64388838	reg1008772.p1	5.057	+	AJ505150 NM_199452	-108588	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-254751	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-360255	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	175748	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	175863	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	187303	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.962639	0.0	denovo_WM_7:6:0.820
chr12	94599936	94600109	reg1010876.p1	5.057	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	-57518	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-528839	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-634421	-	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	253509	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	253620	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	253710	-	AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41	0.99951	0.0	denovo_WM_7:17:0.964
chr5	141397908	141397998	reg1008306.p2	5.057	+	D31766 TSC_hg19_v1_chr5_-_141392593 AK290686 AK022779 AK296452 BC020769 BC022322 NM_005471	-5375	-	TSC_hg19_v1_chr5_+_141348760 BX647955	-49199	+	TSC_hg19_v1_chr5_+_141348705 AK023698 AK023884 AK294262 NM_183401	-49250	+	AK075495 TSC_hg19_v1_chr5_+_141488283	90298	+	TSC_hg19_v1_chr5_+_141488343 NM_030571 AK315481 AY192728	90395	+	AK075524 TSC_hg19_v1_chr5_+_141488384	90431	+	D31766|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK290686|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK022779|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK296452|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC020769|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC022322|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##NM_005471|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BX647955|RNF14|9604|ring finger protein 14##AK023698|RNF14|9604|ring finger protein 14##AK023884|RNF14|9604|ring finger protein 14##AK294262|RNF14|9604|ring finger protein 14##NM_183401|RNF14|9604|ring finger protein 14##AK075495|NDFIP1|80762|Nedd4 family interacting protein 1##NM_030571|NDFIP1|80762|Nedd4 family interacting protein 1##AK315481|NDFIP1|80762|Nedd4 family interacting protein 1##AY192728|NDFIP1|80762|Nedd4 family interacting protein 1##AK075524|NDFIP1|80762|Nedd4 family interacting protein 1	0.0	0.0	
chr12	56551677	56551795	reg1007050.p1	5.056	+	BC014400 NM_001199629 NM_002475 TSC_hg19_v1_chr12_+_56546370 AK304594 AK310996	-5438	+	TSC_hg19_v1_chr12_+_56522204 AB018290	-29521	+	TSC_hg19_v1_chr12_+_56522081 EU832620 EU832692 DQ993200	-29632	+	NM_021019 NM_079423 TSC_hg19_v1_chr12_+_56552121	352	+	TSC_hg19_v1_chr12_+_56552142 AB046613 AK301198 M31212 BC093066 M22918 BC017455 BC071661	425	+	AB527689 CR457014 CU687132 EU831973 EU832066 M22920 U02629 TSC_hg19_v1_chr12_+_56552468	731	+	BC014400|MYL6B|140465|myosin, light chain 6B, alkali, smooth muscle and non-muscle##NM_001199629|MYL6B|140465|myosin, light chain 6B, alkali, smooth muscle and non-muscle##NM_002475|MYL6B|140465|myosin, light chain 6B, alkali, smooth muscle and non-muscle##AK304594|MYL6B|140465|myosin, light chain 6B, alkali, smooth muscle and non-muscle##AK310996|MYL6B|140465|myosin, light chain 6B, alkali, smooth muscle and non-muscle##AB018290|ESYT1|23344|extended synaptotagmin-like protein 1##EU832620|ESYT1|23344|extended synaptotagmin-like protein 1##EU832692|ESYT1|23344|extended synaptotagmin-like protein 1##DQ993200|ESYT1|23344|extended synaptotagmin-like protein 1##NM_021019|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##NM_079423|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##AB046613|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##M31212|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##BC093066|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##M22918|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##BC017455|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##BC071661|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##CR457014|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##EU831973|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##EU832066|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##M22920|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle##U02629|MYL6|4637|myosin, light chain 6, alkali, smooth muscle and non-muscle	0.0	0.020968	
chr7	55432902	55433029	reg1010338.p1	5.056	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-346019	+	TSC_hg19_v1_chr7_+_55086710 BC057802 BC094761 HQ912715 NM_005228 NM_201282 NM_201283 NM_201284 AF125253 U48722 X00588 BC070081 AK225422 K03193 AB209442 BC134346	-346220	+	TSC_hg19_v1_chr7_-_54826929 AF054184 AK311845 NM_001012456 NM_014302	-606044	-	AK095857 NM_018697	175	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	607	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	207075	-	AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##BC094761|EGFR|1956|epidermal growth factor receptor##HQ912715|EGFR|1956|epidermal growth factor receptor##NM_005228|EGFR|1956|epidermal growth factor receptor##NM_201282|EGFR|1956|epidermal growth factor receptor##NM_201283|EGFR|1956|epidermal growth factor receptor##NM_201284|EGFR|1956|epidermal growth factor receptor##AF125253|EGFR|1956|epidermal growth factor receptor##U48722|EGFR|1956|epidermal growth factor receptor##X00588|EGFR|1956|epidermal growth factor receptor##BC070081|EGFR|1956|epidermal growth factor receptor##AK225422|EGFR|1956|epidermal growth factor receptor##K03193|EGFR|1956|epidermal growth factor receptor##AB209442|EGFR|1956|epidermal growth factor receptor##AF054184|SEC61G|23480|Sec61 gamma subunit##AK311845|SEC61G|23480|Sec61 gamma subunit##NM_001012456|SEC61G|23480|Sec61 gamma subunit##NM_014302|SEC61G|23480|Sec61 gamma subunit##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.987922	0.0	denovo_WM_7:-12:0.326	denovo_WM_7:-14:0.561
chrX	10026781	10026909	reg1006666.p2	5.056	+	BC098455 NM_015691	-43052	+	NM_001195081	-91448	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-272302	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	98209	+	AF041210 AB384764 AY539988 AY539994 AY540022 AY540023 EU446510 NM_001193278 NM_001193279 NM_001193280 NM_001193281	508714	-	AF035360 NM_001193277 AY112903	518059	-	BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC140866|SHROOM2|357|shroom family member 2##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4##AF041210|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539988|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539994|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540022|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540023|MID1|4281|midline 1 (Opitz/BBB syndrome)##EU446510|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193278|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193279|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193280|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193281|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)	2.839196	0.0	denovo_WM_7:-57:0.760	denovo_WM_7:-72:0.774
chr8	70510299	70510442	reg1010860.p2	5.055	+	AY101175 TSC_hg19_v1_chr8_+_70405081 AK055607 BX571746	-105281	+	NM_001128205 NM_001128206 TSC_hg19_v1_chr8_+_70405045	-105331	+	TSC_hg19_v1_chr8_+_70379077 AK307951	-131290	+	BC137424 BC144618 NM_001146009	235033	-	AK022760 NM_001146008	235254	-	AK308488 AF205075 AK096879 NM_030958	236879	-	AY101175|SULF1|23213|sulfatase 1##AK055607|SULF1|23213|sulfatase 1##BX571746|SULF1|23213|sulfatase 1##NM_001128205|SULF1|23213|sulfatase 1##NM_001128206|SULF1|23213|sulfatase 1##AK307951|SULF1|23213|sulfatase 1##BC137424|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC144618|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146009|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK022760|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146008|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1	0.995215	0.0	denovo_WM_7:-17:0.931
chr8	95959137	95959317	reg1000812.p2	5.055	+	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-51775	-	TSC_hg19_v1_chr8_+_95835588 BC136754 BC144396 BC144397	-123527	+	TSC_hg19_v1_chr8_+_95835522 BC099915 AB161944 NM_017864	-123679	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	2430	-	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	78077	+	TSC_hg19_v1_chr8_+_96145948 NM_024613	186718	+	BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##BC136754|INTS8|55656|integrator complex subunit 8##BC144396|INTS8|55656|integrator complex subunit 8##BC144397|INTS8|55656|integrator complex subunit 8##BC099915|INTS8|55656|integrator complex subunit 8##AB161944|INTS8|55656|integrator complex subunit 8##NM_017864|INTS8|55656|integrator complex subunit 8##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.0	0.0	
chr1	12261380	12261481	reg1006221.p1	5.054	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	-34319	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	-34369	+	D86042 BC063482 NM_152942 BC073839 BC141804	-75414	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	28677	+	TSC_hg19_v1_chr1_+_12403045 AK057675	141640	+	DQ426869 DQ893006 DQ896252 CU678154 AF061741 AK222593 BC002730 TSC_hg19_v1_chr1_-_12677700 AK310202 AY358093 AK309282 AK312961 BX648476 NM_004753	416153	-	AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AK057675|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##DQ426869|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ893006|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##DQ896252|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AF061741|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK222593|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BC002730|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK310202|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AY358093|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##AK312961|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##BX648476|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3##NM_004753|DHRS3|9249|dehydrogenase/reductase (SDR family) member 3	1.994526	0.0	
chr8	21344583	21344729	reg1007916.p1	5.054	+	AF123652 AF123654 AF123655 AF123656 AF123657 AF123658 EU446940 BC075006 BC075007 AF123659 NM_021020	-1231910	-	TSC_hg19_v1_chr8_+_20054905 X62949 BC003100 AK298819 AB208806 L35249 CU688958 DQ891837 DQ895023 BC007309	-1289734	+	TSC_hg19_v1_chr8_+_20054891 AK294163 BC030640 AK312372	-1289763	+	AY326396 AY941828 U93703 AB529071 CU692022 AF002700 BC033096 TSC_hg19_v1_chr8_-_21645836 AK299623 U97145	301136	-	TSC_hg19_v1_chr8_-_21646372 BC041688 NM_001165038 NM_001165039 NM_001495	301710	-	AB528923 AF034970 CU689448 DQ890550 DQ896808 AK292126 BC032623 AK226110 AK296671 TSC_hg19_v1_chr8_-_21771202 NM_003974	426509	-	AF123652|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123654|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123655|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123656|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123657|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123658|LZTS1|11178|leucine zipper, putative tumor suppressor 1##EU446940|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075006|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075007|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123659|LZTS1|11178|leucine zipper, putative tumor suppressor 1##NM_021020|LZTS1|11178|leucine zipper, putative tumor suppressor 1##X62949|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC003100|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK298819|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AB208806|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##L35249|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ891837|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ895023|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC007309|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK294163|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC030640|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK312372|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AY326396|GFRA2|2675|GDNF family receptor alpha 2##AY941828|GFRA2|2675|GDNF family receptor alpha 2##U93703|GFRA2|2675|GDNF family receptor alpha 2##AF002700|GFRA2|2675|GDNF family receptor alpha 2##AK299623|GFRA2|2675|GDNF family receptor alpha 2##U97145|GFRA2|2675|GDNF family receptor alpha 2##BC041688|GFRA2|2675|GDNF family receptor alpha 2##NM_001165038|GFRA2|2675|GDNF family receptor alpha 2##NM_001165039|GFRA2|2675|GDNF family receptor alpha 2##NM_001495|GFRA2|2675|GDNF family receptor alpha 2##AF034970|DOK2|9046|docking protein 2, 56kDa##DQ890550|DOK2|9046|docking protein 2, 56kDa##DQ896808|DOK2|9046|docking protein 2, 56kDa##AK292126|DOK2|9046|docking protein 2, 56kDa##BC032623|DOK2|9046|docking protein 2, 56kDa##AK226110|DOK2|9046|docking protein 2, 56kDa##AK296671|DOK2|9046|docking protein 2, 56kDa##NM_003974|DOK2|9046|docking protein 2, 56kDa	0.952343	0.0	denovo_WM_7:-60:0.468	denovo_WM_7:-61:0.347
chr9	111870670	111870801	reg1010339.p1	5.054	+	AB451283 AB451415 HQ258655 TSC_hg19_v1_chr9_-_111775780 BC117208 BC117234 AF080071 AF006070 AF135021 NM_003798 U97067 AF030233 AK314677 AK022926 AK223230 AK022834	-94967	-	TSC_hg19_v1_chr9_+_111696741 BC051827 AF153417 CU677447	-173989	+	TSC_hg19_v1_chr9_+_111696715 AK310297	-174021	+	TSC_hg19_v1_chr9_-_111882206 AK299952	11470	-	TSC_hg19_v1_chr9_-_111882212 BC142984 AF153415 NM_032012	11485	-	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	58794	-	AB451283|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AB451415|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##HQ258655|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##BC117208|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##BC117234|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF080071|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF006070|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF135021|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##NM_003798|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##U97067|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF030233|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK314677|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK022926|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK223230|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK022834|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##BC051827|FAM206A|54942|family with sequence similarity 206, member A##AF153417|FAM206A|54942|family with sequence similarity 206, member A##AK310297|FAM206A|54942|family with sequence similarity 206, member A##AK299952|C9orf5|23731|chromosome 9 open reading frame 5##AF153415|C9orf5|23731|chromosome 9 open reading frame 5##NM_032012|C9orf5|23731|chromosome 9 open reading frame 5##AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4	0.993887	0.0	
chr5	67673970	67674098	reg1008498.p1	5.053	+	AK094785 NM_001242466 AK294919	-85582	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	-87488	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	-89740	+	NM_001251969 NM_022902 NM_024055 BC017441 TSC_hg19_v1_chr5_+_68389821	715769	+	TSC_hg19_v1_chr5_+_68389892 AY358505 AF461760	715848	+	AK292925 TSC_hg19_v1_chr5_+_68389913	715879	+	AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001251969|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_022902|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_024055|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC017441|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AY358505|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AF461760|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK292925|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5	1.434404	0.0	denovo_WM_7:53:0.258	denovo_WM_7:68:0.256
chr8	73883977	73884093	reg1001019.p2	5.053	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-434392	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-896201	-	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-1127327	-	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	37077	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	121407	-	BC150551 BC150552 NM_001243237	287701	-	AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301	0.99692	0.0	denovo_WM_7:-48:0.928
chr9	86310772	86310888	reg1008412.p2	5.053	+	BC142991 BC036421 BC045782 TSC_hg19_v1_chr9_+_86238057 NM_001001551 NM_001190727 AY615889	-72850	+	AK094281 EF560742 TSC_hg19_v1_chr9_-_86153270 AK297722 AK223597 NM_001244959 NM_174938 BC041376	-157625	-	NM_001244960 AY137774	-228171	-	AF176069 AF293384 AB528730 TSC_hg19_v1_chr9_-_86322601	11770	-	TSC_hg19_v1_chr9_-_86322844 BC010066	12017	-	TSC_hg19_v1_chr9_-_86322860 AK027576 BC017289 BC039294	12027	-	BC142991|C9orf103|414328|chromosome 9 open reading frame 103##BC036421|C9orf103|414328|chromosome 9 open reading frame 103##BC045782|C9orf103|414328|chromosome 9 open reading frame 103##NM_001001551|C9orf103|414328|chromosome 9 open reading frame 103##NM_001190727|C9orf103|414328|chromosome 9 open reading frame 103##AY615889|C9orf103|414328|chromosome 9 open reading frame 103##AK094281|FRMD3|257019|FERM domain containing 3##EF560742|FRMD3|257019|FERM domain containing 3##AK297722|FRMD3|257019|FERM domain containing 3##AK223597|FRMD3|257019|FERM domain containing 3##NM_001244959|FRMD3|257019|FERM domain containing 3##NM_174938|FRMD3|257019|FERM domain containing 3##BC041376|FRMD3|257019|FERM domain containing 3##NM_001244960|FRMD3|257019|FERM domain containing 3##AY137774|FRMD3|257019|FERM domain containing 3##AF176069|UBQLN1|29979|ubiquilin 1##AF293384|UBQLN1|29979|ubiquilin 1##BC010066|UBQLN1|29979|ubiquilin 1##AK027576|UBQLN1|29979|ubiquilin 1##BC039294|UBQLN1|29979|ubiquilin 1	0.598101	0.0	denovo_WM_7:36:0.585
chr1	235012540	235012720	reg1007926.p2	5.052	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-116856	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-267384	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-268772	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	279459	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	279601	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	311933	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.991229	0.0	denovo_WM_7:49:0.419	denovo_WM_7:50:0.419
chr15	80954616	80954772	reg1010402.p1	5.052	+	AK295763 TSC_hg19_v1_chr15_+_80733623	-221089	+	TSC_hg19_v1_chr15_+_80696739 BC051335 NM_014862 BC036099 BX647212 BX538026 AM392973 DQ890610 DQ894176	-257960	+	M55150 TSC_hg19_v1_chr15_+_80445353 BC002527 CU678020 BT007160	-509318	+	TSC_hg19_v1_chr15_+_80987661 BC115003 NM_021214 BC059401	32968	+	TSC_hg19_v1_chr15_+_80987953 AL390079 AK298606	33315	+	TSC_hg19_v1_chr15_+_81071711 AB103330 AK000465 AY581148 AY581149 AY585237 NM_018689 BC020256	117027	+	AK295763|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BC051335|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##NM_014862|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BC036099|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BX647212|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BX538026|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##AM392973|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##DQ890610|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##DQ894176|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##M55150|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)##BC002527|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)##BT007160|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)##BC115003|FAM108C1|58489|family with sequence similarity 108, member C1##NM_021214|FAM108C1|58489|family with sequence similarity 108, member C1##BC059401|FAM108C1|58489|family with sequence similarity 108, member C1##AL390079|FAM108C1|58489|family with sequence similarity 108, member C1##AK298606|FAM108C1|58489|family with sequence similarity 108, member C1##AB103330|KIAA1199|57214|KIAA1199##AK000465|KIAA1199|57214|KIAA1199##AY581148|KIAA1199|57214|KIAA1199##AY581149|KIAA1199|57214|KIAA1199##NM_018689|KIAA1199|57214|KIAA1199##BC020256|KIAA1199|57214|KIAA1199	0.997759	0.0	denovo_WM_7:52:0.238	denovo_WM_7:53:0.238	denovo_WM_7:54:0.238	denovo_WM_7:55:0.238
chr19	38469805	38469897	reg1002831.p2	5.052	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	-71939	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	-71994	+	AK302913 AY026504 AK128826 NM_031951	-72577	-	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	244984	-	BC021191 TSC_hg19_v1_chr19_-_38720320 NM_001135156	250465	-	TSC_hg19_v1_chr19_-_38720336 AK297581	250483	-	BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1##BC021191|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135156|DPF1|8193|D4, zinc and double PHD fingers family 1##AK297581|DPF1|8193|D4, zinc and double PHD fingers family 1	0.0	0.0	
chr2	219272225	219272396	reg1011172.p1	5.052	+	TSC_hg19_v1_chr2_+_219264739 BC012977 AB463546 EU446878 CU680458 AY279529	-7529	+	AF229162 NM_021198 NM_182642 TSC_hg19_v1_chr2_+_219264577	-7770	+	NM_001206878	-9250	+	TSC_hg19_v1_chr2_+_219283845 NM_007127 AK223398 AK300965 AK313709	11530	+	TSC_hg19_v1_chr2_-_219433075 BC133007 BC133009 BC144249 BC144252 AK095577 AK128583 BX538024 BC050461 BC112901 AL832645 NM_020935	160743	-	AK293281 TSC_hg19_v1_chr2_+_219433334 AB500892	161056	+	BC012977|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##EU446878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AY279529|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AF229162|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_021198|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_182642|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_001206878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_007127|VIL1|7429|villin 1##AK223398|VIL1|7429|villin 1##AK300965|VIL1|7429|villin 1##AK313709|VIL1|7429|villin 1##BC133007|USP37|57695|ubiquitin specific peptidase 37##BC133009|USP37|57695|ubiquitin specific peptidase 37##BC144249|USP37|57695|ubiquitin specific peptidase 37##BC144252|USP37|57695|ubiquitin specific peptidase 37##AK095577|USP37|57695|ubiquitin specific peptidase 37##AK128583|USP37|57695|ubiquitin specific peptidase 37##BX538024|USP37|57695|ubiquitin specific peptidase 37##BC050461|USP37|57695|ubiquitin specific peptidase 37##BC112901|USP37|57695|ubiquitin specific peptidase 37##AL832645|USP37|57695|ubiquitin specific peptidase 37##NM_020935|USP37|57695|ubiquitin specific peptidase 37##AK293281|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##AB500892|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)	2.743233	0.0	denovo_WM_7:23:0.585	denovo_WM_7:39:0.415	denovo_WM_7:54:0.514
chr9	96120105	96120220	reg1009456.p2	5.052	+	NM_001098808 TSC_hg19_v1_chr9_-_96108726	-11452	-	AJ242724 NM_006648 AB051547 AB463351	-172930	+	BT007164 CU690562 U72661 U91512 BC019336 BC004440 BC000298 TSC_hg19_v1_chr9_-_95896534 BC048212 NM_004148	-223620	-	BC080634 TSC_hg19_v1_chr9_-_96213799 BC037551 BC063650 BC038803	93626	-	BC046183 TSC_hg19_v1_chr9_-_96213849	93685	-	TSC_hg19_v1_chr9_+_96214001 BC075701 BC098584 AF214737 AF214738 NM_014612 BC111736 D80005	94018	+	NM_001098808|C9orf129|445577|chromosome 9 open reading frame 129##AJ242724|WNK2|65268|WNK lysine deficient protein kinase 2##NM_006648|WNK2|65268|WNK lysine deficient protein kinase 2##AB051547|WNK2|65268|WNK lysine deficient protein kinase 2##BT007164|NINJ1|4814|ninjurin 1##U72661|NINJ1|4814|ninjurin 1##U91512|NINJ1|4814|ninjurin 1##BC019336|NINJ1|4814|ninjurin 1##BC004440|NINJ1|4814|ninjurin 1##BC000298|NINJ1|4814|ninjurin 1##BC048212|NINJ1|4814|ninjurin 1##NM_004148|NINJ1|4814|ninjurin 1##BC080634|FAM120AOS|158293|family with sequence similarity 120A opposite strand##BC037551|FAM120AOS|158293|family with sequence similarity 120A opposite strand##BC063650|FAM120AOS|158293|family with sequence similarity 120A opposite strand##BC038803|FAM120AOS|158293|family with sequence similarity 120A opposite strand##BC046183|FAM120AOS|158293|family with sequence similarity 120A opposite strand##BC075701|FAM120A|23196|family with sequence similarity 120A##BC098584|FAM120A|23196|family with sequence similarity 120A##AF214737|FAM120A|23196|family with sequence similarity 120A##AF214738|FAM120A|23196|family with sequence similarity 120A##NM_014612|FAM120A|23196|family with sequence similarity 120A##BC111736|FAM120A|23196|family with sequence similarity 120A##D80005|FAM120A|23196|family with sequence similarity 120A	0.994232	0.0	denovo_WM_7:50:0.948
chrX	22050313	22050423	reg1008561.p2	5.052	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-91542	+	AK091850 NM_206923	-176264	+	TSC_hg19_v1_chrX_+_21857790 AK312474 AB385581 CU690354	-192550	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	657	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	240700	+	AY039237 NM_182699 BC067878 BC051703	967716	+	NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AK091850|YY2|404281|YY2 transcription factor##NM_206923|YY2|404281|YY2 transcription factor##AK312474|MBTPS2|51360|membrane-bound transcription factor peptidase, site 2##NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	0.301965	0.0	denovo_WM_7:-22:0.208
chr10	34660495	34660629	reg1009649.p2	5.051	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-1036564	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-1036748	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-1037109	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	443589	-	AK310225 AK300491 NM_001198778 NM_001198779	702650	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	718710	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.123306	0.0	
chr10	88265025	88265154	reg1006318.p2	5.051	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-138826	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-2080394	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2133471	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	16405	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	16441	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	149305	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.996342	0.0	
chr9	115995082	115995221	reg1008569.p2	5.051	+	TSC_hg19_v1_chr9_+_115983867 AK129613 AK222866 AL831843 BC013611 BC061924	-11280	+	NM_001859 TSC_hg19_v1_chr9_+_115983846 U83460 AK292511	-11317	+	AB385371 TSC_hg19_v1_chr9_-_115983577 AK307498 AB014574 BC009609 AK303074 NM_015258	-11568	-	TSC_hg19_v1_chr9_-_116037689 AK307507	42550	-	BC042534 BC066300 TSC_hg19_v1_chr9_-_116037865 NM_139286	42694	-	NM_001244926 NM_004697 TSC_hg19_v1_chr9_+_116037937 AK225056 U82756	42780	+	AK129613|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK222866|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AL831843|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##BC013611|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##BC061924|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##NM_001859|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##U83460|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK292511|SLC31A1|1317|solute carrier family 31 (copper transporters), member 1##AK307498|FKBP15|23307|FK506 binding protein 15, 133kDa##AB014574|FKBP15|23307|FK506 binding protein 15, 133kDa##BC009609|FKBP15|23307|FK506 binding protein 15, 133kDa##AK303074|FKBP15|23307|FK506 binding protein 15, 133kDa##NM_015258|FKBP15|23307|FK506 binding protein 15, 133kDa##AK307507|FKBP15|23307|FK506 binding protein 15, 133kDa##BC042534|CDC26|246184|cell division cycle 26 homolog (S. cerevisiae)##BC066300|CDC26|246184|cell division cycle 26 homolog (S. cerevisiae)##NM_139286|CDC26|246184|cell division cycle 26 homolog (S. cerevisiae)##NM_001244926|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)##NM_004697|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)##AK225056|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)##U82756|PRPF4|9128|PRP4 pre-mRNA processing factor 4 homolog (yeast)	0.981018	0.0	denovo_WM_7:-19:0.970
chr9	67290355	67290535	reg1007414.p1	5.051	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-737170	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-796249	-	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	-831949	-	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	636371	+	TSC_hg19_v1_chr9_+_68726468 AK311167	1436057	+	TSC_hg19_v1_chr9_+_69065493 AK311167	1775093	+	BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene	0.0	0.717282	CTCF.p2:-95:0.717
chr11	58354518	58354661	reg1010533.p1	5.050	+	TSC_hg19_v1_chr11_+_58346697 AB056107 AB057443 CU690828	-7894	+	TSC_hg19_v1_chr11_+_58346591 BC051743 NM_001197051 NM_053023	-8006	+	BC034230 TSC_hg19_v1_chr11_-_58345666 AK300955 NM_001143995 AK299264	-8928	-	BC069167 NM_000614 BC068030 AK314118 BC074963 BC074964 CU686605 S72921	35596	+	AF023466 BC009785 NM_005838 NM_201648	144818	-	BC021682 NM_145016 BC016789	257399	-	AB056107|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB057443|ZFP91-CNTF|386607|ZFP91-CNTF readthrough##BC051743|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_001197051|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_053023|ZFP91|80829|zinc finger protein 91 homolog (mouse)##BC034230|LPXN|9404|leupaxin##AK300955|LPXN|9404|leupaxin##NM_001143995|LPXN|9404|leupaxin##AK299264|LPXN|9404|leupaxin##BC069167|CNTF|1270|ciliary neurotrophic factor##NM_000614|CNTF|1270|ciliary neurotrophic factor##BC068030|CNTF|1270|ciliary neurotrophic factor##AK314118|CNTF|1270|ciliary neurotrophic factor##BC074963|CNTF|1270|ciliary neurotrophic factor##BC074964|CNTF|1270|ciliary neurotrophic factor##S72921|CNTF|1270|ciliary neurotrophic factor##AF023466|GLYAT|10249|glycine-N-acyltransferase##BC009785|GLYAT|10249|glycine-N-acyltransferase##NM_005838|GLYAT|10249|glycine-N-acyltransferase##NM_201648|GLYAT|10249|glycine-N-acyltransferase##BC021682|GLYATL2|219970|glycine-N-acyltransferase-like 2##NM_145016|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC016789|GLYATL2|219970|glycine-N-acyltransferase-like 2	0.012869	0.0	
chr12	121477181	121477338	reg1008601.p1	5.050	+	TSC_hg19_v1_chr12_-_121476781 HQ258301 AJ225089 AK314419 NM_003733 NM_198213 AK023956 BC117408 BC117410	-476	-	TSC_hg19_v1_chr12_-_121454291 AK222630 AK299170 AK301566 AK022510 AK225162 NM_022895 AK307971	-22965	-	TSC_hg19_v1_chr12_-_121454230 BC014661	-23015	-	NM_002562 TSC_hg19_v1_chr12_+_121570744 AK294126 AK290405 AK296432 BC011913 BC121157 BC121158 AB209709 BC007679 AK090866 AK225163 AX746656 Y09561 GQ180122 DQ893457 DQ896337 AB590390 CU680114 AY847298 AY847299 AY847300 AY847301 AY847302 AY847303 AY847304 DQ399293	93442	+	U83993 NM_002560	170402	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	170633	+	HQ258301|OASL|8638|2'-5'-oligoadenylate synthetase-like##AJ225089|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK314419|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_003733|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_198213|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK023956|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117408|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117410|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK222630|C12orf43|64897|chromosome 12 open reading frame 43##AK299170|C12orf43|64897|chromosome 12 open reading frame 43##AK301566|C12orf43|64897|chromosome 12 open reading frame 43##AK022510|C12orf43|64897|chromosome 12 open reading frame 43##AK225162|C12orf43|64897|chromosome 12 open reading frame 43##NM_022895|C12orf43|64897|chromosome 12 open reading frame 43##AK307971|C12orf43|64897|chromosome 12 open reading frame 43##BC014661|C12orf43|64897|chromosome 12 open reading frame 43##NM_002562|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK294126|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK290405|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK296432|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC011913|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121157|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121158|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AB209709|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC007679|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK090866|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK225163|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##Y09561|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##GQ180122|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ893457|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ896337|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847298|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847299|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847300|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847301|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847302|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847303|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847304|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ399293|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4	1.001874	0.0	denovo_WM_7:91:0.978	denovo_WM_7:107:0.985
chr19	10755610	10755711	reg1007927.p2	5.050	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	-19441	+	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	-42527	+	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	-57712	-	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	8851	-	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	9280	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	9386	+	FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa	0.990809	0.255828	CTCF.p2:-29:0.256
chr2	102641514	102641645	reg1011729.p1	5.050	+	BC027733 BC012346 NM_173343	-26122	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-33216	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-133047	+	TSC_hg19_v1_chr2_+_102759205 X16896	117653	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	128841	+	AF284434 NM_003854 U49065 BC107064	161869	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.571126	0.0	denovo_WM_7:8:0.349
chr5	142187806	142187931	reg1010794.p1	5.050	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-37560	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-37896	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-110297	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	594955	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	595238	-	BC015610 TSC_hg19_v1_chr5_-_142783214	595343	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	1.994216	0.0	
chr8	107378916	107379016	reg1009970.p1	5.050	+	TSC_hg19_v1_chr8_+_107282433 NM_001198533 NM_018002 AK124441 BC040619	-96543	+	AF119334 BC109222 BC109223 NM_012082	-1047820	+	TSC_hg19_v1_chr8_-_105601235 AK299374 NM_001135703 NM_013437	-1777719	-	AK296561 NM_001198532	81185	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	291022	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	291149	+	NM_001198533|OXR1|55074|oxidation resistance 1##NM_018002|OXR1|55074|oxidation resistance 1##AK124441|OXR1|55074|oxidation resistance 1##BC040619|OXR1|55074|oxidation resistance 1##AF119334|ZFPM2|23414|zinc finger protein, multitype 2##BC109222|ZFPM2|23414|zinc finger protein, multitype 2##BC109223|ZFPM2|23414|zinc finger protein, multitype 2##NM_012082|ZFPM2|23414|zinc finger protein, multitype 2##AK299374|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_001135703|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_013437|LRP12|29967|low density lipoprotein receptor-related protein 12##AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1	0.0	0.0	
chr12	122331951	122332074	reg1008273.p1	5.049	+	TSC_hg19_v1_chr12_+_122326731 AB003177 NM_002813 AK315389 BC002383 BC004184 BC004213 DQ893594 EU831432 EU831524 AB528684	-5317	+	AK057510 NM_001171993	-5496	-	CU692906 DQ892664 DQ896049 BC024287 BC014790 X72389 TSC_hg19_v1_chr12_-_122296766 AK290826 NM_002150	-35319	-	TSC_hg19_v1_chr12_+_122356497 NM_001178003 NM_144668 BC028421 BC036233	24469	+	AK296159 TSC_hg19_v1_chr12_+_122459903 NM_001024808 NM_020993 AK316486 BC113627 BC094723 HQ258124 AB590498	127881	+	TSC_hg19_v1_chr12_+_122516655 BC151841 NM_014938	184595	+	NM_002813|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##AK315389|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC002383|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004184|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004213|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##DQ893594|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831432|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831524|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##AK057510|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_001171993|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##DQ892664|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##DQ896049|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##BC024287|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##BC014790|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##X72389|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##AK290826|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_002150|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_001178003|WDR66|144406|WD repeat domain 66##NM_144668|WDR66|144406|WD repeat domain 66##BC028421|WDR66|144406|WD repeat domain 66##BC036233|WDR66|144406|WD repeat domain 66##AK296159|BCL7A|605|B-cell CLL/lymphoma 7A##NM_001024808|BCL7A|605|B-cell CLL/lymphoma 7A##NM_020993|BCL7A|605|B-cell CLL/lymphoma 7A##AK316486|BCL7A|605|B-cell CLL/lymphoma 7A##BC113627|BCL7A|605|B-cell CLL/lymphoma 7A##BC094723|BCL7A|605|B-cell CLL/lymphoma 7A##HQ258124|BCL7A|605|B-cell CLL/lymphoma 7A##BC151841|MLXIP|22877|MLX interacting protein##NM_014938|MLXIP|22877|MLX interacting protein	0.9995	0.0	denovo_WM_7:41:0.964
chr1	28697060	28697197	reg1010061.p1	5.049	+	TSC_hg19_v1_chr1_+_28696251 NM_001048183 CR749449 AK025436 BC029266 BC016152 BC068508	-903	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	-41581	+	TSC_hg19_v1_chr1_+_28586034 NM_031459 BC013304 AY123223 BC033719 AL136551 AK315710 DQ892827 DQ896073 EU831582 EU831667 AB529110 CU680558	-110970	+	NM_023923 BC021247	67542	+	NM_001048199 TSC_hg19_v1_chr1_+_28832500	135370	+	TSC_hg19_v1_chr1_+_28832555 AJ006834 AJ006835 X06130 BC012122 BC065008 BC007300 BC036903 BC006790 BC017334	135454	+	NM_001048183|PHACTR4|65979|phosphatase and actin regulator 4##CR749449|PHACTR4|65979|phosphatase and actin regulator 4##AK025436|PHACTR4|65979|phosphatase and actin regulator 4##BC029266|PHACTR4|65979|phosphatase and actin regulator 4##BC016152|PHACTR4|65979|phosphatase and actin regulator 4##BC068508|PHACTR4|65979|phosphatase and actin regulator 4##NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18##NM_031459|SESN2|83667|sestrin 2##BC013304|SESN2|83667|sestrin 2##AY123223|SESN2|83667|sestrin 2##BC033719|SESN2|83667|sestrin 2##AL136551|SESN2|83667|sestrin 2##AK315710|SESN2|83667|sestrin 2##DQ892827|SESN2|83667|sestrin 2##DQ896073|SESN2|83667|sestrin 2##EU831582|SESN2|83667|sestrin 2##EU831667|SESN2|83667|sestrin 2##NM_023923|PHACTR4|65979|phosphatase and actin regulator 4##BC021247|PHACTR4|65979|phosphatase and actin regulator 4##NM_001048199|RCC1|1104|regulator of chromosome condensation 1##AJ006834|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##AJ006835|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC012122|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC065008|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC006790|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC017334|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)	0.614423	0.0	denovo_WM_7:0:0.240
chr12	93002345	93002464	reg1007560.p2	5.049	+	AJ845168 NM_001025232	-180481	-	AJ845165 AJ845166 NM_001025233	-184670	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-462761	-	NM_001037671 NM_001178097	94214	+	NM_001004330 AK128530	127883	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	320534	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.995826	0.687942	CTCF.p2:44:0.688
chr22	33964188	33964319	reg1001418.p1	5.049	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-509898	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-561527	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-766501	+	AJ007583 AB011181 NM_004737 NM_133642	352117	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1497896	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1689223	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.0	0.0	
chr4	123222034	123222148	reg1008819.p2	5.049	+	CR936613 TSC_hg19_v1_chr4_+_123161129	-60967	+	DQ335469 NM_015312	-130334	+	AY865574 NM_001130698	-349183	-	NM_139243 AK057303	78052	+	NM_001159285 NM_001159295 BC040229 AK093297 AX748040	78541	+	AF532913 AY283686 AY523040 DQ231169 S77835 AB451325 AB451454 AB591003 CU688118 DQ861285 AF228636 BC066254 BC066255 BC066256 BC066257 BC070338 S77834 U25676 V00564 NM_000586 X01586	155495	-	CR936613|KIAA1109|84162|KIAA1109##DQ335469|KIAA1109|84162|KIAA1109##NM_015312|KIAA1109|84162|KIAA1109##AY865574|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_001130698|TRPC3|7222|transient receptor potential cation channel, subfamily C, member 3##NM_139243|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK057303|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##NM_001159285|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##NM_001159295|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##BC040229|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AK093297|ADAD1|132612|adenosine deaminase domain containing 1 (testis-specific)##AF532913|IL2|3558|interleukin 2##AY283686|IL2|3558|interleukin 2##AY523040|IL2|3558|interleukin 2##DQ231169|IL2|3558|interleukin 2##S77835|IL2|3558|interleukin 2##AB451325|IL2|3558|interleukin 2##AB451454|IL2|3558|interleukin 2##DQ861285|IL2|3558|interleukin 2##AF228636|IL2|3558|interleukin 2##BC066254|IL2|3558|interleukin 2##BC066255|IL2|3558|interleukin 2##BC066256|IL2|3558|interleukin 2##BC066257|IL2|3558|interleukin 2##BC070338|IL2|3558|interleukin 2##S77834|IL2|3558|interleukin 2##U25676|IL2|3558|interleukin 2##V00564|IL2|3558|interleukin 2##NM_000586|IL2|3558|interleukin 2##X01586|IL2|3558|interleukin 2	0.99702	0.0	denovo_WM_7:-9:0.975
chr4	9802705	9802844	reg1009063.p1	5.049	+	NM_000798	-19517	+	AF529414 NM_001040448	-356515	+	BC100993 AY509884 BC100991 BC100992 NM_001105662 NM_001242326 NM_001242327 NM_001242328 NM_001242329 NM_001242330 NM_001242331 NM_001242332	-437921	+	TSC_hg19_v1_chr4_-_10023140 AF210317 NM_020041 BC110414	220350	-	AK310895 BC018897 NM_001001290 AK096819	239148	-	TSC_hg19_v1_chr4_-_10118286 AB385044 CU674086 CU677992	315513	-	NM_000798|DRD5|1816|dopamine receptor D5##AF529414|DEFB131|644414|defensin, beta 131##NM_001040448|DEFB131|644414|defensin, beta 131##BC100993|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_001242326|LOC728373|728373|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242327|LOC728369|728369|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242328|LOC728379|728379|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242329|USP17L5|728386|ubiquitin specific peptidase 17-like 5##NM_001242330|LOC728393|728393|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242331|LOC728400|728400|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242332|LOC728405|728405|ubiquitin carboxyl-terminal hydrolase 17-like##AF210317|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_020041|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC110414|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK310895|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC018897|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_001001290|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK096819|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	0.95472	0.0	denovo_WM_7:-17:0.673
chr17	65575064	65575226	reg1009888.p1	5.048	+	BC007905 NM_012417 NM_181671	-201222	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-201557	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-201736	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	138905	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	246557	+	AK293224 TSC_hg19_v1_chr17_+_65822221	247072	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.985474	0.0	denovo_WM_7:-39:0.789
chr7	44896650	44896809	reg1008467.p1	5.048	+	TSC_hg19_v1_chr7_-_44887698 NM_012412 NM_138635 NM_201436 NM_201516 NM_201517	-9003	-	TSC_hg19_v1_chr7_-_44887667 AK023973	-9060	-	BC014885 AB209001 AK129989 BC000098 BC070169 TSC_hg19_v1_chr7_-_44887654	-9092	-	AB464680 TSC_hg19_v1_chr7_-_44924953 AY039216 NM_033224 BC101735 BC101737	28240	-	AB463131 TSC_hg19_v1_chr7_-_45018615 AK074050	121858	-	BC113544 BC117241 TSC_hg19_v1_chr7_-_45018675 AB290179 AL832302	121933	-	NM_012412|H2AFV|94239|H2A histone family, member V##NM_138635|H2AFV|94239|H2A histone family, member V##NM_201436|H2AFV|94239|H2A histone family, member V##NM_201516|H2AFV|94239|H2A histone family, member V##NM_201517|H2AFV|94239|H2A histone family, member V##AK023973|H2AFV|94239|H2A histone family, member V##BC014885|H2AFV|94239|H2A histone family, member V##AB209001|H2AFV|94239|H2A histone family, member V##AK129989|H2AFV|94239|H2A histone family, member V##BC000098|H2AFV|94239|H2A histone family, member V##BC070169|H2AFV|94239|H2A histone family, member V##AY039216|PURB|5814|purine-rich element binding protein B##NM_033224|PURB|5814|purine-rich element binding protein B##BC101735|PURB|5814|purine-rich element binding protein B##BC101737|PURB|5814|purine-rich element binding protein B##AK074050|MYO1G|64005|myosin IG##BC113544|MYO1G|64005|myosin IG##BC117241|MYO1G|64005|myosin IG##AB290179|MYO1G|64005|myosin IG##AL832302|MYO1G|64005|myosin IG	0.0	0.663056	CTCF.p2:-15:0.663
chr10	94027208	94027320	reg1008927.p1	5.047	+	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-24245	-	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-343572	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-343748	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	23572	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	23790	+	AK302578 AK093287 AK316407 AX748033 NM_001165946	230229	-	AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme	0.0	0.0	
chr1	226189692	226189821	reg1010946.p1	5.047	+	TSC_hg19_v1_chr1_-_226187067 NM_152608	-2675	-	TSC_hg19_v1_chr1_-_226187045 AK291008 AK127780 BC071563 AK308441	-2720	-	TSC_hg19_v1_chr1_-_226187023 AK092701 AX747679 BX648319	-2734	-	AK311905 NM_002107 TSC_hg19_v1_chr1_+_226250410	60653	+	TSC_hg19_v1_chr1_+_226250416 D28384	60660	+	TSC_hg19_v1_chr1_+_226250421 AK291102 AK293541 BC029405 BC067757 BC095447 M11354 BC066901	60670	+	NM_152608|C1orf55|163859|chromosome 1 open reading frame 55##AK291008|C1orf55|163859|chromosome 1 open reading frame 55##AK127780|C1orf55|163859|chromosome 1 open reading frame 55##BC071563|C1orf55|163859|chromosome 1 open reading frame 55##AK308441|C1orf55|163859|chromosome 1 open reading frame 55##AK092701|C1orf55|163859|chromosome 1 open reading frame 55##BX648319|C1orf55|163859|chromosome 1 open reading frame 55##AK311905|H3F3A|3020|H3 histone, family 3A##NM_002107|H3F3A|3020|H3 histone, family 3A##D28384|H3F3A|3020|H3 histone, family 3A##AK291102|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##AK293541|H3F3A|3020|H3 histone, family 3A##BC029405|H3F3A|3020|H3 histone, family 3A##BC067757|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4##BC095447|H3F3A|3020|H3 histone, family 3A##M11354|H3F3A|3020|H3 histone, family 3A##BC066901|H3F3AP4|440926|H3 histone, family 3A, pseudogene 4	0.834759	0.0	denovo_WM_7:-13:0.705
chr16	81031418	81031598	reg1008304.p1	5.047	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	-193461	-	AF125108 NM_130897 BC054892 BC035232	-456620	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1396893	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	8576	+	TSC_hg19_v1_chr16_+_81040132 BC007334	8635	+	TSC_hg19_v1_chr16_-_81040491 AF201935 BC032631 NM_020188	8962	-	AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N##AF201935|C16orf61|56942|chromosome 16 open reading frame 61##BC032631|C16orf61|56942|chromosome 16 open reading frame 61##NM_020188|C16orf61|56942|chromosome 16 open reading frame 61	0.170367	0.0	
chr8	94352262	94352420	reg1011285.p1	5.047	+	BC089453 NM_001242668	-173263	-	NM_001191035 TSC_hg19_v1_chr8_-_93978373 BC031029 AK097956 BC110326 DQ351291 NM_001171795 NM_001171796 NM_001171797 NM_001171798 NM_001171799	-374019	-	AK096398 NM_001191036	-374576	-	BC037909 TSC_hg19_v1_chr8_-_94712710	360345	-	BC014598 TSC_hg19_v1_chr8_+_94712788 BC108707 NM_145269 CR627475 DQ327715 DQ327716 AK096298 CU677061	360463	+	BC039260 TSC_hg19_v1_chr8_-_94753192	400850	-	BC089453|LOC389676|389676|uncharacterized LOC389676##NM_001242668|LOC389676|389676|uncharacterized LOC389676##NM_001191035|C8orf83|286144|chromosome 8 open reading frame 83##BC031029|C8orf83|286144|chromosome 8 open reading frame 83##AK097956|C8orf83|286144|chromosome 8 open reading frame 83##BC110326|C8orf83|286144|chromosome 8 open reading frame 83##DQ351291|C8orf83|286144|chromosome 8 open reading frame 83##NM_001171795|C8orf83|286144|chromosome 8 open reading frame 83##NM_001171796|C8orf83|286144|chromosome 8 open reading frame 83##NM_001171797|C8orf83|286144|chromosome 8 open reading frame 83##NM_001171798|C8orf83|286144|chromosome 8 open reading frame 83##NM_001171799|C8orf83|286144|chromosome 8 open reading frame 83##AK096398|C8orf83|286144|chromosome 8 open reading frame 83##NM_001191036|C8orf83|286144|chromosome 8 open reading frame 83##BC037909|LOC642924|642924|uncharacterized LOC642924##BC014598|FAM92A1|137392|family with sequence similarity 92, member A1##BC108707|FAM92A1|137392|family with sequence similarity 92, member A1##NM_145269|FAM92A1|137392|family with sequence similarity 92, member A1##CR627475|FAM92A1|137392|family with sequence similarity 92, member A1##DQ327715|FAM92A1|137392|family with sequence similarity 92, member A1##DQ327716|FAM92A1|137392|family with sequence similarity 92, member A1##AK096298|FAM92A1|137392|family with sequence similarity 92, member A1##BC039260|RBM12B|389677|RNA binding motif protein 12B	0.98376	0.0	denovo_WM_7:-74:0.454	denovo_WM_7:-75:0.454
chr17	37019785	37019913	reg1010352.p1	5.046	+	TSC_hg19_v1_chr17_-_37009990 AB528571 DQ893218 DQ896547 BC034378 X55954 AK095288 BC010114 BC062716 X52839 AK024749 D28349 BC104651 NM_000978	-9843	-	TSC_hg19_v1_chr17_-_37009338 BC003518	-10502	-	NM_001080465	-22208	-	NM_006148 TSC_hg19_v1_chr17_+_37026113	6265	+	AK307868 TSC_hg19_v1_chr17_+_37026294 AK294704	6432	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	6465	+	DQ893218|RPL23|9349|ribosomal protein L23##DQ896547|RPL23|9349|ribosomal protein L23##BC034378|RPL23|9349|ribosomal protein L23##X55954|RPL23|9349|ribosomal protein L23##AK095288|SNORA21|619505|small nucleolar RNA, H/ACA box 21##BC010114|RPL23|9349|ribosomal protein L23##BC062716|RPL23|9349|ribosomal protein L23##X52839|RPL23|9349|ribosomal protein L23##AK024749|RPL23|9349|ribosomal protein L23##BC104651|RPL23|9349|ribosomal protein L23##NM_000978|RPL23|9349|ribosomal protein L23##BC003518|RPL23|9349|ribosomal protein L23##NM_001080465|C17orf98|388381|chromosome 17 open reading frame 98##NM_006148|LASP1|3927|LIM and SH3 protein 1##AK307868|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1	1.024558	0.0	
chr6	75914007	75914141	reg1008564.p1	5.046	+	TSC_hg19_v1_chr6_+_74406033 AY149920	-1508050	+	EF553520 TSC_hg19_v1_chr6_+_74405925 AY788891 BX641095	-1508154	+	TSC_hg19_v1_chr6_+_74405882 AK095888	-1508203	+	BC146868 U73778 NM_004370 NM_080645 TSC_hg19_v1_chr6_-_75915745	1581	-	TSC_hg19_v1_chr6_-_75915768 AK307558	1706	-	CR407646 CR542125 X15822 TSC_hg19_v1_chr6_-_75953494 BC101826 BC101828 AK312154	39405	-	AY149920|CD109|135228|CD109 molecule##EF553520|CD109|135228|CD109 molecule##AY788891|CD109|135228|CD109 molecule##BX641095|CD109|135228|CD109 molecule##AK095888|CD109|135228|CD109 molecule##BC146868|COL12A1|1303|collagen, type XII, alpha 1##U73778|COL12A1|1303|collagen, type XII, alpha 1##NM_004370|COL12A1|1303|collagen, type XII, alpha 1##NM_080645|COL12A1|1303|collagen, type XII, alpha 1##AK307558|COL12A1|1303|collagen, type XII, alpha 1##CR407646|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##CR542125|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##X15822|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##BC101826|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##BC101828|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##AK312154|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)	0.0	0.0	
chr7	83965759	83965849	reg1009171.p2	5.046	+	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	-141482	-	NM_012431	-687326	-	AK303925 NM_001178129	-695058	-	NM_152754	785442	-	AK309116 TSC_hg19_v1_chr7_-_84816296	850431	-	TSC_hg19_v1_chr7_+_86273224 BC041407 NM_000840	2307421	+	NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##NM_012431|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##AK303925|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_001178129|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_152754|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##AK309116|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##BC041407|GRM3|2913|glutamate receptor, metabotropic 3##NM_000840|GRM3|2913|glutamate receptor, metabotropic 3	0.0	0.0	
chr10	101760501	101760651	reg1008224.p2	5.045	+	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	-69873	-	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	-218013	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	-218081	+	TSC_hg19_v1_chr10_-_101769671 AL833283 NM_015221	9085	-	X14329 BC027897 NM_001308 AK313972	81049	-	TSC_hg19_v1_chr10_-_101945727 NM_006459 AK222480 AK298427 AK315580	185160	-	AK128576|DNMBP|23268|dynamin binding protein##X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##AL833283|DNMBP|23268|dynamin binding protein##NM_015221|DNMBP|23268|dynamin binding protein##X14329|CPN1|1369|carboxypeptidase N, polypeptide 1##BC027897|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_001308|CPN1|1369|carboxypeptidase N, polypeptide 1##AK313972|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_006459|ERLIN1|10613|ER lipid raft associated 1##AK222480|ERLIN1|10613|ER lipid raft associated 1##AK298427|ERLIN1|10613|ER lipid raft associated 1##AK315580|ERLIN1|10613|ER lipid raft associated 1	1.628493	0.0	denovo_WM_7:46:0.257	denovo_WM_7:48:0.339	denovo_WM_7:61:0.286	denovo_WM_7:63:0.306
chr1	191551420	191551545	reg1009106.p1	5.045	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-1104747	-	NM_024420 TSC_hg19_v1_chr1_+_186798126 AK290336 M68874 M72393 AK302938 BC114340	-4753394	+	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	-4901992	-	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	576121	+	AY643711 NM_001039152	734639	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	993426	+	AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_024420|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK290336|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M68874|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M72393|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK302938|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##BC114340|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1	0.187414	0.0	
chr1	200518309	200518489	reg1009025.p1	5.045	+	BC060820 NM_012482 TSC_hg19_v1_chr1_-_200379187 AK027284	-139205	-	TSC_hg19_v1_chr1_-_200379155 AK297233 AK022916 AK094701	-139282	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	-139490	-	TSC_hg19_v1_chr1_-_200589869 D26361 NM_014875	71480	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	120630	-	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	120709	-	BC060820|ZNF281|23528|zinc finger protein 281##NM_012482|ZNF281|23528|zinc finger protein 281##AK027284|ZNF281|23528|zinc finger protein 281##AK297233|ZNF281|23528|zinc finger protein 281##AK022916|ZNF281|23528|zinc finger protein 281##AK094701|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281##D26361|KIF14|9928|kinesin family member 14##NM_014875|KIF14|9928|kinesin family member 14##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	0.992182	0.0	
chr12	56915174	56915354	reg1007842.p1	5.045	+	AK289471 BC025661 BC036929 AK000467 AF110330 AK303772 AF223944 AK294822 BC119767 BC119768 BC059370 BC048344 NM_013267	-33224	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	-52912	+	HQ258134 BC074913 BC117474 NM_012064	-66848	-	TSC_hg19_v1_chr12_+_56915603 NM_002898 BC072679 AK308885 AK293315 AK304540 D28483 AK299580 BC027863 CU693300	433	+	AF000422 TSC_hg19_v1_chr12_-_57006969	91652	-	AK023830 TSC_hg19_v1_chr12_-_57009380	94112	-	AK289471|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC025661|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC036929|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK000467|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF110330|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK303772|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF223944|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK294822|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119767|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119768|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC059370|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC048344|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_013267|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber##NM_002898|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC072679|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK308885|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK293315|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK304540|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##D28483|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK299580|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC027863|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AF000422|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023830|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A	1.988961	0.0	denovo_WM_7:-41:0.248	denovo_WM_7:-42:0.248	denovo_WM_7:-43:0.248	denovo_WM_7:-44:0.248
chr15	59396795	59396975	reg1000728.p1	5.045	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-37807	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-116606	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-117028	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	486	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	102167	+	AB290177 TSC_hg19_v1_chr15_-_59665055	268169	-	AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE	0.999116	0.0	denovo_WM_7:-56:0.310	denovo_WM_7:-57:0.310	denovo_WM_7:-58:0.310
chr17	75839693	75839850	reg1011408.p1	5.045	+	TSC_hg19_v1_chr17_+_75543021 AK096234	-296751	+	AK056495 NM_001113495	-368447	+	AK299828 TSC_hg19_v1_chr17_+_75447450	-392382	+	BC039479 NM_001142640 NM_018996	160511	+	TSC_hg19_v1_chr17_-_76124768 AK074065	285001	-	TSC_hg19_v1_chr17_-_76124837 AK096076 AY099356 AY099357 AK303584 AK310734 NM_001127198 AK021738	285067	-	AK096234|LOC100507351|100507351|uncharacterized LOC100507351##AK056495|SEPT9|10801|septin 9##NM_001113495|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9##BC039479|TNRC6C|57690|trinucleotide repeat containing 6C##NM_001142640|TNRC6C|57690|trinucleotide repeat containing 6C##NM_018996|TNRC6C|57690|trinucleotide repeat containing 6C##AK074065|TMC6|11322|transmembrane channel-like 6##AK096076|TMC6|11322|transmembrane channel-like 6##AY099356|TMC6|11322|transmembrane channel-like 6##AY099357|TMC6|11322|transmembrane channel-like 6##AK303584|TMC6|11322|transmembrane channel-like 6##AK310734|TMC6|11322|transmembrane channel-like 6##NM_001127198|TMC6|11322|transmembrane channel-like 6##AK021738|TMC6|11322|transmembrane channel-like 6	0.9962	0.0	denovo_WM_7:-76:0.249	denovo_WM_7:-77:0.249	denovo_WM_7:-78:0.249	denovo_WM_7:-79:0.249
chr21	46300621	46300746	reg1009100.p1	5.045	+	TSC_hg19_v1_chr21_+_46293937 BC092510	-6723	+	TSC_hg19_v1_chr21_-_46293609 AK315626 AK299204 AF149785 NM_004339	-6970	-	TSC_hg19_v1_chr21_-_46293607 BC012858 AK298557	-7080	-	TSC_hg19_v1_chr21_-_46340815 L78790 AK303488 M15395 AK128344	40114	-	AK222505 TSC_hg19_v1_chr21_-_46340824	40148	-	AB208909 TSC_hg19_v1_chr21_-_46340890 NM_000211	40236	-	AK315626|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##AK299204|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##AF149785|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##NM_004339|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##BC012858|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##AK298557|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##L78790|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK303488|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##M15395|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK128344|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK222505|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AB208909|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_000211|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)	0.998808	0.0	denovo_WM_7:-41:0.227	denovo_WM_7:-42:0.740
chr2	3622714	3622831	reg1008067.p1	5.045	+	TSC_hg19_v1_chr2_-_3605926 AF039652 NM_002936	-16830	-	TSC_hg19_v1_chr2_-_3605921 BC002973	-16851	-	AJ224117 BT019670 CR541820 DQ892597 DQ895824 TSC_hg19_v1_chr2_-_3605880 AF048994 AK096913 AF048995 AK075490	-16893	-	TSC_hg19_v1_chr2_-_3622741 AK125306	7	-	TSC_hg19_v1_chr2_+_3622852 NM_001011 BC061901	81	+	TSC_hg19_v1_chr2_+_3622901 BC002866	127	+	AF039652|RNASEH1|246243|ribonuclease H1##NM_002936|RNASEH1|246243|ribonuclease H1##BC002973|RNASEH1|246243|ribonuclease H1##AJ224117|RNASEH1|246243|ribonuclease H1##BT019670|RNASEH1|246243|ribonuclease H1##CR541820|RNASEH1|246243|ribonuclease H1##DQ892597|RNASEH1|246243|ribonuclease H1##DQ895824|RNASEH1|246243|ribonuclease H1##AF048994|RNASEH1|246243|ribonuclease H1##AK096913|RNASEH1|246243|ribonuclease H1##AF048995|RNASEH1|246243|ribonuclease H1##AK075490|RNASEH1|246243|ribonuclease H1##NM_001011|RPS7|6201|ribosomal protein S7##BC061901|RPS7|6201|ribosomal protein S7##BC002866|RPS7|6201|ribosomal protein S7	0.0	0.0	
chr4	148639217	148639343	reg1010354.p1	5.045	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	-34016	-	TSC_hg19_v1_chr4_+_148538568 AK001708	-100674	+	TSC_hg19_v1_chr4_+_148538547 BC046128 NM_018241	-100747	+	TSC_hg19_v1_chr4_+_148653238 AK123785	13971	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	14177	+	TSC_hg19_v1_chr4_-_149357955 AB587357	718702	-	BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK001708|TMEM184C|55751|transmembrane protein 184C##BC046128|TMEM184C|55751|transmembrane protein 184C##NM_018241|TMEM184C|55751|transmembrane protein 184C##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10	0.336096	0.0	denovo_WM_7:-38:0.285
chr5	55291268	55291448	reg1009722.p2	5.045	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	-595	-	NM_001242636 NM_001242639	-142209	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-144089	+	AK123389 NM_024669	237827	-	NM_005921	819541	+	TSC_hg19_v1_chr5_+_56111375 AK307828	820006	+	BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1##AK307828|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.0	
chr6	132006618	132006760	reg1009619.p1	5.045	+	AK024899 AK296080 AK310691 AK315893 NM_005021 AK292903 EF560735 AF005632 AB587329 DQ234347	-48207	+	AB385438 AF135022 AM393572 EU832308 EU832392 EU392526 EU392528 EU392529 EU392530 EU392531 AK315030 AF105332 EU392520 EU392522 EU392527 EU392532 BC060759 TSC_hg19_v1_chr6_-_131949372 AF104255 AL136776 AB033042 BC007088 NM_004830 NM_015979	-57402	-	NM_000045 NM_001244438 AY074488 BC005321 TSC_hg19_v1_chr6_+_131894365 M14502 BC020653 CU676606 AB590280 DQ892039 DQ895230 BT006741	-112307	+	BC120953 BC120954 NM_030908	15851	-	NM_001145659	25467	-	TSC_hg19_v1_chr6_+_132129157 NM_006208 BC059375 D12485 M57736	122472	+	AK024899|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK296080|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK310691|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK315893|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##NM_005021|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK292903|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##EF560735|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##DQ234347|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AF135022|MED23|9439|mediator complex subunit 23##AM393572|MED23|9439|mediator complex subunit 23##EU832308|MED23|9439|mediator complex subunit 23##EU832392|MED23|9439|mediator complex subunit 23##EU392526|MED23|9439|mediator complex subunit 23##EU392528|MED23|9439|mediator complex subunit 23##EU392529|MED23|9439|mediator complex subunit 23##EU392530|MED23|9439|mediator complex subunit 23##EU392531|MED23|9439|mediator complex subunit 23##AK315030|MED23|9439|mediator complex subunit 23##AF105332|MED23|9439|mediator complex subunit 23##EU392520|MED23|9439|mediator complex subunit 23##EU392522|MED23|9439|mediator complex subunit 23##EU392527|MED23|9439|mediator complex subunit 23##EU392532|MED23|9439|mediator complex subunit 23##BC060759|MED23|9439|mediator complex subunit 23##AF104255|MED23|9439|mediator complex subunit 23##AL136776|MED23|9439|mediator complex subunit 23##AB033042|MED23|9439|mediator complex subunit 23##BC007088|MED23|9439|mediator complex subunit 23##NM_004830|MED23|9439|mediator complex subunit 23##NM_015979|MED23|9439|mediator complex subunit 23##NM_000045|ARG1|383|arginase, liver##NM_001244438|ARG1|383|arginase, liver##AY074488|ARG1|383|arginase, liver##BC005321|ARG1|383|arginase, liver##M14502|ARG1|383|arginase, liver##BC020653|ARG1|383|arginase, liver##DQ892039|ARG1|383|arginase, liver##DQ895230|ARG1|383|arginase, liver##BT006741|ARG1|383|arginase, liver##BC120953|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##BC120954|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##NM_030908|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##NM_001145659|CTAGE9|643854|CTAGE family, member 9##NM_006208|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##BC059375|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##D12485|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1##M57736|ENPP1|5167|ectonucleotide pyrophosphatase/phosphodiesterase 1	0.0	0.0	
chr12	120550166	120550273	reg1008698.p3	5.044	+	TSC_hg19_v1_chr12_+_120427616 AK129960 NM_207311 U88834	-122621	+	TSC_hg19_v1_chr12_-_120315112 AY209000 AY257469 BC008127 AY681966 NM_001206999 NM_007174	-235126	-	AK123136 TSC_hg19_v1_chr12_-_120241305	-308922	-	AF498960 BT020024 CR536486 CR541683 CU677517 DQ890586 DQ890603 DQ893750 AB528529 TSC_hg19_v1_chr12_-_120554547 X79781 AK304620	4282	-	TSC_hg19_v1_chr12_-_120554551 AK312538	4334	-	BC015931 TSC_hg19_v1_chr12_-_120554557	4338	-	AK129960|CCDC64|92558|coiled-coil domain containing 64##NM_207311|CCDC64|92558|coiled-coil domain containing 64##U88834|CCDC64|92558|coiled-coil domain containing 64##AY209000|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY257469|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##BC008127|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY681966|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_001206999|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_007174|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK123136|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AF498960|RAB35|11021|RAB35, member RAS oncogene family##BT020024|RAB35|11021|RAB35, member RAS oncogene family##CR536486|RAB35|11021|RAB35, member RAS oncogene family##CR541683|RAB35|11021|RAB35, member RAS oncogene family##DQ890586|RAB35|11021|RAB35, member RAS oncogene family##DQ890603|RAB35|11021|RAB35, member RAS oncogene family##DQ893750|RAB35|11021|RAB35, member RAS oncogene family##X79781|RAB35|11021|RAB35, member RAS oncogene family##AK304620|RAB35|11021|RAB35, member RAS oncogene family##AK312538|RAB35|11021|RAB35, member RAS oncogene family##BC015931|RAB35|11021|RAB35, member RAS oncogene family	0.995122	0.0	denovo_WM_7:25:0.974
chr15	80311378	80311480	reg1002818.p1	5.044	+	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	-47878	-	TSC_hg19_v1_chr15_-_80216042 AF249277	-95391	-	NM_001100880 NM_001199757	-95766	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	40513	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	40600	+	TSC_hg19_v1_chr15_+_80352046 AL136598	40638	+	BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6##AL136598|ZFAND6|54469|zinc finger, AN1-type domain 6	0.993913	0.0	denovo_WM_7:-11:0.981
chr5	114139573	114139646	reg1009896.p2	5.044	+	BC015371 NM_170775 BC040722	-370360	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	-441148	+	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	-441560	+	TSC_hg19_v1_chr5_-_114505606 AK316422 AK296389	365995	-	AB196558 AJ272269 BC130334 AK125426 BC045164 BC046096 NM_001017397 NM_001017398 NM_018700	376378	-	AY780790 AB590094 TSC_hg19_v1_chr5_-_114598563 NM_005023	458957	-	BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK316422|TRIM36|55521|tripartite motif containing 36##AK296389|TRIM36|55521|tripartite motif containing 36##AB196558|TRIM36|55521|tripartite motif containing 36##AJ272269|TRIM36|55521|tripartite motif containing 36##BC130334|TRIM36|55521|tripartite motif containing 36##AK125426|TRIM36|55521|tripartite motif containing 36##BC045164|TRIM36|55521|tripartite motif containing 36##BC046096|TRIM36|55521|tripartite motif containing 36##NM_001017397|TRIM36|55521|tripartite motif containing 36##NM_001017398|TRIM36|55521|tripartite motif containing 36##NM_018700|TRIM36|55521|tripartite motif containing 36##AY780790|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##NM_005023|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit	0.995568	0.0	
chr6	87865154	87865267	reg1012344.p2	5.044	+	V00518 AK023644 AK311972 BC055080 BC010957 BC020782 NM_000735 NM_001252383	-60392	-	NM_000865	-218187	+	BC009220 BC108291 AK311192 TSC_hg19_v1_chr6_-_86388452	-1476773	-	TSC_hg19_v1_chr6_+_87865282 NM_015021 AK123473 BX537746 CR936740	79	+	TSC_hg19_v1_chr6_+_87964930 AL832366	99770	+	BC016386 TSC_hg19_v1_chr6_+_87967437	102225	+	V00518|CGA|1081|glycoprotein hormones, alpha polypeptide##AK311972|CGA|1081|glycoprotein hormones, alpha polypeptide##BC055080|CGA|1081|glycoprotein hormones, alpha polypeptide##BC010957|CGA|1081|glycoprotein hormones, alpha polypeptide##BC020782|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000735|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_001252383|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000865|HTR1E|3354|5-hydroxytryptamine (serotonin) receptor 1E##BC009220|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##BC108291|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##NM_015021|ZNF292|23036|zinc finger protein 292##AK123473|ZNF292|23036|zinc finger protein 292##BX537746|ZNF292|23036|zinc finger protein 292##AL832366|ZNF292|23036|zinc finger protein 292##BC016386|ZNF292|23036|zinc finger protein 292	0.0	0.0	
chr10	99266146	99266278	reg1009082.p1	5.043	+	TSC_hg19_v1_chr10_+_99258879 CU675619	-7294	+	TSC_hg19_v1_chr10_+_99258694 BC007331 NM_024954 AK222597 AK021869	-7492	+	NM_022362 AF319947	-7774	-	AJ583444 AK056990 NM_001129981 NM_020349 BC107759	66035	+	AK094791 TSC_hg19_v1_chr10_+_99344126 BC011916 NM_001134670 NM_138413 BC045550 BC057821 AK293733	77893	+	TSC_hg19_v1_chr10_+_99344421 AK289440 CU691258 CU692268 EU831607 EU831618 EU831694 EU831704	78228	+	BC007331|UBTD1|80019|ubiquitin domain containing 1##NM_024954|UBTD1|80019|ubiquitin domain containing 1##AK222597|UBTD1|80019|ubiquitin domain containing 1##AK021869|UBTD1|80019|ubiquitin domain containing 1##NM_022362|MMS19|64210|MMS19 nucleotide excision repair homolog (S. cerevisiae)##AF319947|MMS19|64210|MMS19 nucleotide excision repair homolog (S. cerevisiae)##AJ583444|ANKRD2|26287|ankyrin repeat domain 2 (stretch responsive muscle)##AK056990|ANKRD2|26287|ankyrin repeat domain 2 (stretch responsive muscle)##NM_001129981|ANKRD2|26287|ankyrin repeat domain 2 (stretch responsive muscle)##NM_020349|ANKRD2|26287|ankyrin repeat domain 2 (stretch responsive muscle)##BC107759|ANKRD2|26287|ankyrin repeat domain 2 (stretch responsive muscle)##AK094791|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##BC011916|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##NM_001134670|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##NM_138413|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##BC045550|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##BC057821|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##AK289440|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831607|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831618|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831694|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1##EU831704|HOGA1|112817|4-hydroxy-2-oxoglutarate aldolase 1	1.806156	0.0	denovo_WM_7:6:0.695	denovo_WM_7:23:0.788
chr12	57078673	57078762	reg1003867.p4	5.043	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-38891	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-38962	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-48591	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	3133	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	3223	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	3284	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	0.0	0.0	
chr13	55837334	55837457	reg1013451.p1	5.043	+	AK000683 NM_006418 BC117329 TSC_hg19_v1_chr13_+_53602947 AY358567 HQ258281 AF097021 AK300947	-2234483	+	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	-2414620	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	-2523433	-	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	1877721	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	1884291	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	1890864	+	AK000683|OLFM4|10562|olfactomedin 4##NM_006418|OLFM4|10562|olfactomedin 4##BC117329|OLFM4|10562|olfactomedin 4##AY358567|OLFM4|10562|olfactomedin 4##HQ258281|OLFM4|10562|olfactomedin 4##AF097021|OLFM4|10562|olfactomedin 4##AK300947|OLFM4|10562|olfactomedin 4##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A	0.038288	0.0	
chr17	45615533	45615713	reg1011394.p2	5.043	+	TSC_hg19_v1_chr17_+_45608738 BC065294	-6872	+	TSC_hg19_v1_chr17_+_45608647 AK095877 AK296887 AJ132583	-6942	+	TSC_hg19_v1_chr17_+_45608556 AK096709	-7051	+	TSC_hg19_v1_chr17_+_45726838 AK316421	111218	+	L38951 NM_002265 TSC_hg19_v1_chr17_+_45727284	111661	+	BC036703 TSC_hg19_v1_chr17_+_45727323 AK314780 BC003572 BC024045	111722	+	BC065294|NPEPPS|9520|aminopeptidase puromycin sensitive##AK095877|NPEPPS|9520|aminopeptidase puromycin sensitive##AK296887|NPEPPS|9520|aminopeptidase puromycin sensitive##AJ132583|NPEPPS|9520|aminopeptidase puromycin sensitive##AK096709|NPEPPS|9520|aminopeptidase puromycin sensitive##AK316421|KPNB1|3837|karyopherin (importin) beta 1##L38951|KPNB1|3837|karyopherin (importin) beta 1##NM_002265|KPNB1|3837|karyopherin (importin) beta 1##BC036703|KPNB1|3837|karyopherin (importin) beta 1##AK314780|KPNB1|3837|karyopherin (importin) beta 1##BC003572|KPNB1|3837|karyopherin (importin) beta 1##BC024045|KPNB1|3837|karyopherin (importin) beta 1	0.993308	0.0	
chr22	42573479	42573628	reg1008769.p1	5.043	+	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-46672	-	AB463001 CU013213 CU013501 M20403 X08006 BC066877 BC067432 TSC_hg19_v1_chr22_-_42526809 BC106757 BC106758 BC126858 CR456430 BC075023 BC075024	-46746	-	TSC_hg19_v1_chr22_+_42486980 AK123630 BC039542	-86527	+	AB527391 NM_005650 NM_181492	37824	-	BC038245 TSC_hg19_v1_chr22_-_42765218	191649	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	254828	-	AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013213|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013501|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##M20403|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##X08006|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC066877|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC067432|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106757|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106758|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC126858|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CR456430|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075023|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075024|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK123630|LOC100132273|100132273|uncharacterized LOC100132273##BC039542|LOC100132273|100132273|uncharacterized LOC100132273##NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1	0.0	0.0	
chr11	120081255	120081401	reg1006414.p1	5.042	+	TSC_hg19_v1_chr11_-_120008858 AF230388 AF230389 L24203 NM_012101	-72473	-	BC017352 BC010644 TSC_hg19_v1_chr11_-_120008822 AK223090 AK122720	-72516	-	AB464321 CU675956 EU446943 TSC_hg19_v1_chr11_-_120008772	-72573	-	TSC_hg19_v1_chr11_+_120081739 BC047726 NM_178507 BC008339	385	+	AK302212 NM_001244682	26020	+	AK291993 NM_014352 AF162278 BC101649 BC143593 BC143594 BC143595 AF133895 AJ012214 EU446698	29649	+	AF230388|TRIM29|23650|tripartite motif containing 29##AF230389|TRIM29|23650|tripartite motif containing 29##L24203|TRIM29|23650|tripartite motif containing 29##NM_012101|TRIM29|23650|tripartite motif containing 29##BC017352|TRIM29|23650|tripartite motif containing 29##BC010644|TRIM29|23650|tripartite motif containing 29##AK223090|TRIM29|23650|tripartite motif containing 29##AK122720|TRIM29|23650|tripartite motif containing 29##EU446943|TRIM29|23650|tripartite motif containing 29##BC047726|OAF|220323|OAF homolog (Drosophila)##NM_178507|OAF|220323|OAF homolog (Drosophila)##BC008339|OAF|220323|OAF homolog (Drosophila)##AK302212|POU2F3|25833|POU class 2 homeobox 3##NM_001244682|POU2F3|25833|POU class 2 homeobox 3##AK291993|POU2F3|25833|POU class 2 homeobox 3##NM_014352|POU2F3|25833|POU class 2 homeobox 3##AF162278|POU2F3|25833|POU class 2 homeobox 3##BC101649|POU2F3|25833|POU class 2 homeobox 3##BC143593|POU2F3|25833|POU class 2 homeobox 3##BC143594|POU2F3|25833|POU class 2 homeobox 3##BC143595|POU2F3|25833|POU class 2 homeobox 3##AF133895|POU2F3|25833|POU class 2 homeobox 3##AJ012214|POU2F3|25833|POU class 2 homeobox 3##EU446698|POU2F3|25833|POU class 2 homeobox 3	0.39351	0.0	denovo_WM_7:56:0.235
chr1	173386977	173387137	reg1007894.p1	5.042	+	CR542033 D90224 X79929 NM_003326	-210665	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	-212404	-	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	-367001	-	TSC_hg19_v1_chr1_-_173446300 AK127238	59251	-	TSC_hg19_v1_chr1_+_173446473 AK300680	59416	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	59470	+	CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##AK300680|PRDX6|9588|peroxiredoxin 6##BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6	0.963251	0.0	denovo_WM_7:23:0.400	denovo_WM_7:24:0.357
chr1	27826778	27826929	reg1004528.p2	5.042	+	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	-10177	-	TSC_hg19_v1_chr1_-_27816670 BC012329	-10182	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	-10253	-	BC042058 NM_001029882	103268	-	BC064935 TSC_hg19_v1_chr1_-_27930394	103524	-	AK125143 TSC_hg19_v1_chr1_-_27952648 NM_001042747	125817	-	NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##NM_001029882|AHDC1|27245|AT hook, DNA binding motif, containing 1##BC064935|AHDC1|27245|AT hook, DNA binding motif, containing 1##AK125143|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042747|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog	0.999297	0.0	
chr2	13689287	13689467	reg1007921.p1	5.042	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-830980	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-831461	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-832124	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1083444	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1083474	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2012052	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	0.0	0.0	
chr7	70204728	70204853	reg1010160.p3	5.042	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1140202	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1140461	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1140954	+	TSC_hg19_v1_chr7_+_70231164 AK296981	26415	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	392998	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1596988	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.999859	0.0	
chr12	49362431	49362590	reg1008919.p1	5.041	+	TSC_hg19_v1_chr12_-_49351310 M74491	-11206	-	TSC_hg19_v1_chr12_-_49351269 AK300080	-11244	-	NM_001659 TSC_hg19_v1_chr12_-_49351257	-11254	-	U81787 NM_003394 AK312906	3088	-	NM_005430	9725	+	AB527129 AB018292 BC136398 BC136399 TSC_hg19_v1_chr12_-_49393076 NM_015086 BC039264	30490	-	M74491|ARF3|377|ADP-ribosylation factor 3##NM_001659|ARF3|377|ADP-ribosylation factor 3##U81787|WNT10B|7480|wingless-type MMTV integration site family, member 10B##NM_003394|WNT10B|7480|wingless-type MMTV integration site family, member 10B##AK312906|WNT10B|7480|wingless-type MMTV integration site family, member 10B##NM_005430|WNT1|7471|wingless-type MMTV integration site family, member 1##AB018292|DDN|23109|dendrin##BC136398|DDN|23109|dendrin##BC136399|DDN|23109|dendrin##NM_015086|DDN|23109|dendrin##BC039264|DDN|23109|dendrin	0.993249	0.0	denovo_WM_7:63:0.230	denovo_WM_7:66:0.363	denovo_WM_7:67:0.235
chr15	65135703	65135821	reg1010257.p2	5.041	+	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	-1655	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-17927	-	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-68016	-	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	68327	+	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	146047	-	TSC_hg19_v1_chr15_-_65282170 AK172849 AK225527 AK312943 BC000244	146372	-	NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK172849|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK225527|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK312943|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##BC000244|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.994154	0.042114	denovo_WM_7:27:0.779
chr20	35672668	35672764	reg1007048.p2	5.041	+	TSC_hg19_v1_chr20_-_35580196 AK027811 NM_015474	-92501	-	AF228421 AK315169 TSC_hg19_v1_chr20_-_35580179	-92539	-	TSC_hg19_v1_chr20_-_35580112 AK304795 AL050267	-92603	-	AB384850 DQ890612 DQ893783 CU689312 TSC_hg19_v1_chr20_-_35724395 AK308096 BC032247 AK290380 L14812	51649	-	TSC_hg19_v1_chr20_-_35724401 AK310870 NM_002895 NM_183404	51691	-	TSC_hg19_v1_chr20_+_35807496 NM_001135771 NM_002951 Y00282	134758	+	AK027811|SAMHD1|25939|SAM domain and HD domain 1##NM_015474|SAMHD1|25939|SAM domain and HD domain 1##AF228421|SAMHD1|25939|SAM domain and HD domain 1##AK315169|SAMHD1|25939|SAM domain and HD domain 1##AK304795|SAMHD1|25939|SAM domain and HD domain 1##AL050267|SAMHD1|25939|SAM domain and HD domain 1##DQ890612|RBL1|5933|retinoblastoma-like 1 (p107)##DQ893783|RBL1|5933|retinoblastoma-like 1 (p107)##AK308096|RBL1|5933|retinoblastoma-like 1 (p107)##BC032247|RBL1|5933|retinoblastoma-like 1 (p107)##AK290380|RBL1|5933|retinoblastoma-like 1 (p107)##L14812|RBL1|5933|retinoblastoma-like 1 (p107)##AK310870|RBL1|5933|retinoblastoma-like 1 (p107)##NM_002895|RBL1|5933|retinoblastoma-like 1 (p107)##NM_183404|RBL1|5933|retinoblastoma-like 1 (p107)##NM_001135771|RPN2|6185|ribophorin II##NM_002951|RPN2|6185|ribophorin II##Y00282|RPN2|6185|ribophorin II	0.466827	0.0	denovo_WM_7:34:0.415
chr4	83340690	83340807	reg1010564.p1	5.041	+	AK300149 TSC_hg19_v1_chr4_-_83295145 AK292707 AK303552 NM_001003810 NM_002138 NM_031369 NM_031370	-45595	-	TSC_hg19_v1_chr4_-_83295122 D55674 AK057836 D55672 BC023977 BC026015	-45668	-	AF039575 X03910 AB463729 DQ892240 DQ895440 BC002401 TSC_hg19_v1_chr4_-_83294907	-45876	-	X75683 TSC_hg19_v1_chr4_-_83347247	6487	-	TSC_hg19_v1_chr4_-_83347780 AK057480	7034	-	D89678 AK300122 AY453824 AB066484 CU675641 TSC_hg19_v1_chr4_-_83350547	9751	-	AK300149|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK292707|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK303552|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_001003810|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_002138|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_031369|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##NM_031370|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55674|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK057836|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55672|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC023977|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC026015|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AF039575|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##X03910|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ892240|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ895440|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC002401|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##X75683|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AK057480|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##D89678|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AK300122|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AY453824|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like##AB066484|HNRPDL|9987|heterogeneous nuclear ribonucleoprotein D-like	0.0	0.02332	
chr5	79387671	79387774	reg1010142.p2	5.041	+	BC050456 TSC_hg19_v1_chr5_+_79331170 NM_003248 AK313587 Z19585	-56558	+	TSC_hg19_v1_chr5_-_79287069 AK091375 AX746944 BX538064 BC150295 AK296864 BX647596 NM_001010891 NM_001167741	-100764	-	TSC_hg19_v1_chr5_+_78985662 BC020856 NM_153610 AL832376	-402050	+	BC101280 BC101281 BC101282 BC101283 TSC_hg19_v1_chr5_-_79551866 AF498273 AK297467 NM_001174071 NM_001174072 NM_178276	164163	-	NM_032567 AK098575 AK314007 AF333098 BC033798	228093	+	TSC_hg19_v1_chr5_+_79703879 NM_001105251 NM_014733 BC032227 BX537424 CR933621 AB002303 BC030808	316131	+	BC050456|THBS4|7060|thrombospondin 4##NM_003248|THBS4|7060|thrombospondin 4##AK313587|THBS4|7060|thrombospondin 4##Z19585|THBS4|7060|thrombospondin 4##AK091375|MTX3|345778|metaxin 3##BX538064|MTX3|345778|metaxin 3##BC150295|MTX3|345778|metaxin 3##AK296864|MTX3|345778|metaxin 3##BX647596|MTX3|345778|metaxin 3##NM_001010891|MTX3|345778|metaxin 3##NM_001167741|MTX3|345778|metaxin 3##BC020856|CMYA5|202333|cardiomyopathy associated 5##NM_153610|CMYA5|202333|cardiomyopathy associated 5##AL832376|CMYA5|202333|cardiomyopathy associated 5##BC101280|SERINC5|256987|serine incorporator 5##BC101281|SERINC5|256987|serine incorporator 5##BC101282|SERINC5|256987|serine incorporator 5##BC101283|SERINC5|256987|serine incorporator 5##AF498273|SERINC5|256987|serine incorporator 5##AK297467|SERINC5|256987|serine incorporator 5##NM_001174071|SERINC5|256987|serine incorporator 5##NM_001174072|SERINC5|256987|serine incorporator 5##NM_178276|SERINC5|256987|serine incorporator 5##NM_032567|SPZ1|84654|spermatogenic leucine zipper 1##AK098575|SPZ1|84654|spermatogenic leucine zipper 1##AK314007|SPZ1|84654|spermatogenic leucine zipper 1##AF333098|SPZ1|84654|spermatogenic leucine zipper 1##BC033798|SPZ1|84654|spermatogenic leucine zipper 1##NM_001105251|ZFYVE16|9765|zinc finger, FYVE domain containing 16##NM_014733|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC032227|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BX537424|ZFYVE16|9765|zinc finger, FYVE domain containing 16##CR933621|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AB002303|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC030808|ZFYVE16|9765|zinc finger, FYVE domain containing 16	0.0	0.995766	CTCF.p2:-2:0.996
chr9	103993472	103993627	reg1009422.p1	5.041	+	AK000307 AK225306 BC029380 NM_017753 TSC_hg19_v1_chr9_+_103947336	-46223	+	NM_207299 AK303807 TSC_hg19_v1_chr9_+_103791087	-202483	+	NM_001018116 AK300099 TSC_hg19_v1_chr9_+_103340380 EU487253 BC090888	-653160	+	NM_001127610 AK315347	152273	-	L34081 BC039200 BC009567 NM_001701 BC107424	153726	-	TSC_hg19_v1_chr9_-_104160901 BC032008 AK295521 AK000500 AK025643 NM_019051	167348	-	AK000307|LPPR1|54886|lipid phosphate phosphatase-related protein type 1##AK225306|LPPR1|54886|lipid phosphate phosphatase-related protein type 1##BC029380|LPPR1|54886|lipid phosphate phosphatase-related protein type 1##NM_017753|LPPR1|54886|lipid phosphate phosphatase-related protein type 1##NM_207299|LPPR1|54886|lipid phosphate phosphatase-related protein type 1##AK303807|LPPR1|54886|lipid phosphate phosphatase-related protein type 1##NM_001018116|MURC|347273|muscle-related coiled-coil protein##AK300099|MURC|347273|muscle-related coiled-coil protein##EU487253|MURC|347273|muscle-related coiled-coil protein##BC090888|MURC|347273|muscle-related coiled-coil protein##NM_001127610|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##AK315347|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##L34081|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##BC039200|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##BC009567|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##NM_001701|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##BC107424|BAAT|570|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)##BC032008|MRPL50|54534|mitochondrial ribosomal protein L50##AK000500|MRPL50|54534|mitochondrial ribosomal protein L50##NM_019051|MRPL50|54534|mitochondrial ribosomal protein L50	2.135471	0.0	denovo_WM_7:20:0.684	denovo_WM_7:102:0.761
chr11	34254773	34254951	reg1012960.p1	5.040	+	TSC_hg19_v1_chr11_+_34127208 AK294044 AL136882 AK001636 BC014440 BC020205	-127612	+	NM_001144030 NM_024662 TSC_hg19_v1_chr11_+_34127175 AK022241 AK225341 BC035558 AB051496	-127705	+	TSC_hg19_v1_chr11_+_34073956 EU176359 EU176467 EU176701	-180825	+	TSC_hg19_v1_chr11_-_34379556 AK291744 NM_145804	124693	-	TSC_hg19_v1_chr11_+_34460487 AK291585 NM_001752 BC110398 AK315350 X04076 BC112217 BC112219	205612	+	TSC_hg19_v1_chr11_+_34460533 AB587573 AY028632 HQ258304	205687	+	AK294044|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AL136882|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK001636|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC014440|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC020205|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_001144030|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_024662|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK022241|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK225341|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC035558|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AB051496|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##EU176359|CAPRIN1|4076|cell cycle associated protein 1##EU176467|CAPRIN1|4076|cell cycle associated protein 1##EU176701|CAPRIN1|4076|cell cycle associated protein 1##AK291744|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##NM_145804|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##AK291585|CAT|847|catalase##NM_001752|CAT|847|catalase##BC110398|CAT|847|catalase##AK315350|CAT|847|catalase##X04076|CAT|847|catalase##BC112217|CAT|847|catalase##BC112219|CAT|847|catalase##AY028632|CAT|847|catalase##HQ258304|CAT|847|catalase	2.680347	0.0	denovo_WM_7:24:0.348	denovo_WM_7:25:0.366	denovo_WM_7:26:0.274	denovo_WM_7:-64:0.748	denovo_WM_7:-90:0.328	denovo_WM_7:-93:0.499
chr15	89721037	89721203	reg1010619.p1	5.040	+	TSC_hg19_v1_chr15_+_89631738 X12433	-89383	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	-89417	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	-89472	+	AL109729 TSC_hg19_v1_chr15_+_89739320	18158	+	AK312457 BC004199 NM_000326 DQ980611	43786	-	TSC_hg19_v1_chr15_+_89787197 NM_001113378 NM_018193 BC146804	66073	+	X12433|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL109729|ABHD2|11057|abhydrolase domain containing 2##AK312457|RLBP1|6017|retinaldehyde binding protein 1##BC004199|RLBP1|6017|retinaldehyde binding protein 1##NM_000326|RLBP1|6017|retinaldehyde binding protein 1##DQ980611|RLBP1|6017|retinaldehyde binding protein 1##NM_001113378|FANCI|55215|Fanconi anemia, complementation group I##NM_018193|FANCI|55215|Fanconi anemia, complementation group I##BC146804|FANCI|55215|Fanconi anemia, complementation group I	0.945283	0.978179	denovo_WM_7:-26:0.451	denovo_WM_7:-29:0.376	CTCF.p2:39:0.978
chr2	9796580	9796750	reg1004192.p2	5.040	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-25540	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	-25616	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	-26052	-	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	186955	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	295185	+	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	387127	+	NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11	0.0	0.0	
chr3	130594648	130594787	reg1011826.p2	5.040	+	NM_001199180 NM_001199181 NM_001199182 AK296470	-25311	+	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	-129114	-	AM774225 NM_001102608	-315540	+	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	18428	+	AK301388 BC069265 AK027806 NM_014065 AK294156	150923	-	AK297300 NM_001146003 NM_024800 NM_145910 AK123021 AL833472 AB071996 AB071997 BC026195 AK293261 AK316352	151018	+	NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK301388|ASTE1|28990|asteroid homolog 1 (Drosophila)##BC069265|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK027806|ASTE1|28990|asteroid homolog 1 (Drosophila)##NM_014065|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK294156|ASTE1|28990|asteroid homolog 1 (Drosophila)##AK297300|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##NM_001146003|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##NM_024800|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##NM_145910|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK123021|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AL833472|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AB071996|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AB071997|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##BC026195|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK293261|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11##AK316352|NEK11|79858|NIMA (never in mitosis gene a)- related kinase 11	0.981535	0.0	denovo_WM_7:15:0.881
chr4	57727068	57727174	reg1008581.p2	5.040	+	CR542135 DQ895533 EU176199 TSC_hg19_v1_chr4_-_57687883 AK312222 NM_021114 X57655 BC022514 GU727622	-39256	-	AF492675 NM_001145460 NM_032495 NM_139212	-179263	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	-204543	-	TSC_hg19_v1_chr4_+_57774035 NM_005612	46934	+	TSC_hg19_v1_chr4_+_57774090 BC038985 U13879 U22680	47042	+	BC132859 BC136491 TSC_hg19_v1_chr4_+_57774509	47316	+	CR542135|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##DQ895533|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##EU176199|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AK312222|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_021114|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##X57655|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##BC022514|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##GU727622|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##NM_005612|REST|5978|RE1-silencing transcription factor##BC038985|REST|5978|RE1-silencing transcription factor##U13879|REST|5978|RE1-silencing transcription factor##BC132859|REST|5978|RE1-silencing transcription factor##BC136491|REST|5978|RE1-silencing transcription factor	0.995289	0.0	
chr6	13303915	13304063	reg1010647.p2	5.040	+	AK091836 AX747210 NM_001242698	-8172	-	AK290017 NM_001242648 NM_030948 TSC_hg19_v1_chr6_+_12717049	-586946	+	AK295263 TSC_hg19_v1_chr6_+_12716998	-587046	+	AF151073 AK223445 AY542308 AY826820 TSC_hg19_v1_chr6_-_13328771 BC050465 AK057228 AK296391 BC007054 AL833474 NM_001143964 NM_001143965 NM_001143966 NM_016495	24711	-	AK027010 NM_001242630	104379	-	AK055131 AF264036 NM_001242628	182409	-	AK091836|LOC100130357|100130357|uncharacterized LOC100130357##NM_001242698|LOC100130357|100130357|uncharacterized LOC100130357##AK290017|PHACTR1|221692|phosphatase and actin regulator 1##NM_001242648|PHACTR1|221692|phosphatase and actin regulator 1##NM_030948|PHACTR1|221692|phosphatase and actin regulator 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1##AF151073|TBC1D7|51256|TBC1 domain family, member 7##AK223445|TBC1D7|51256|TBC1 domain family, member 7##AY542308|TBC1D7|51256|TBC1 domain family, member 7##AY826820|TBC1D7|51256|TBC1 domain family, member 7##BC050465|TBC1D7|51256|TBC1 domain family, member 7##AK057228|TBC1D7|51256|TBC1 domain family, member 7##AK296391|TBC1D7|51256|TBC1 domain family, member 7##BC007054|TBC1D7|51256|TBC1 domain family, member 7##AL833474|TBC1D7|51256|TBC1 domain family, member 7##NM_001143964|TBC1D7|51256|TBC1 domain family, member 7##NM_001143965|TBC1D7|51256|TBC1 domain family, member 7##NM_001143966|TBC1D7|51256|TBC1 domain family, member 7##NM_016495|TBC1D7|51256|TBC1 domain family, member 7##AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AK055131|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##AF264036|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242628|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	0.0	0.0	
chr10	115863123	115863287	reg1009940.p2	5.039	+	NM_000684 J03019	-59396	+	TSC_hg19_v1_chr10_+_115614419 NM_198514 AK090631 AX746547	-248786	+	D42045 NM_014881 AK307187	-249289	-	TSC_hg19_v1_chr10_-_115933963 BC100670 BC103499 BC103504 BC105632 BC152306 BC107430 BC070368 BX537964 AK307517 AK092620 AX747632 BC020842 BC030557	70727	-	NM_018017	71158	-	AK122916 AL833340 NM_198795 BX648664 BC063133	75866	+	NM_000684|ADRB1|153|adrenergic, beta-1-, receptor##J03019|ADRB1|153|adrenergic, beta-1-, receptor##NM_198514|NHLRC2|374354|NHL repeat containing 2##AK090631|NHLRC2|374354|NHL repeat containing 2##D42045|DCLRE1A|9937|DNA cross-link repair 1A##NM_014881|DCLRE1A|9937|DNA cross-link repair 1A##BC100670|C10orf118|55088|chromosome 10 open reading frame 118##BC103499|C10orf118|55088|chromosome 10 open reading frame 118##BC103504|C10orf118|55088|chromosome 10 open reading frame 118##BC105632|C10orf118|55088|chromosome 10 open reading frame 118##BC152306|C10orf118|55088|chromosome 10 open reading frame 118##BC107430|C10orf118|55088|chromosome 10 open reading frame 118##BC070368|C10orf118|55088|chromosome 10 open reading frame 118##BX537964|C10orf118|55088|chromosome 10 open reading frame 118##AK307517|C10orf118|55088|chromosome 10 open reading frame 118##AK092620|C10orf118|55088|chromosome 10 open reading frame 118##BC020842|C10orf118|55088|chromosome 10 open reading frame 118##BC030557|C10orf118|55088|chromosome 10 open reading frame 118##NM_018017|C10orf118|55088|chromosome 10 open reading frame 118##AK122916|TDRD1|56165|tudor domain containing 1##AL833340|TDRD1|56165|tudor domain containing 1##NM_198795|TDRD1|56165|tudor domain containing 1##BX648664|TDRD1|56165|tudor domain containing 1##BC063133|TDRD1|56165|tudor domain containing 1	0.0	0.66522	CTCF.p2:74:0.665
chr2	54752010	54752149	reg1011578.p1	5.039	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-67712	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-68467	+	AK097617 NM_001100396 BC126244 BC126246 BC144191 BC144192 BC031669	-193991	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	33486	+	NM_001039753	200069	+	TSC_hg19_v1_chr2_-_55199899 BC131571	447829	-	BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AK097617|C2orf73|129852|chromosome 2 open reading frame 73##NM_001100396|C2orf73|129852|chromosome 2 open reading frame 73##BC126244|C2orf73|129852|chromosome 2 open reading frame 73##BC126246|C2orf73|129852|chromosome 2 open reading frame 73##BC144191|C2orf73|129852|chromosome 2 open reading frame 73##BC144192|C2orf73|129852|chromosome 2 open reading frame 73##BC031669|C2orf73|129852|chromosome 2 open reading frame 73##AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6	0.391188	0.0	denovo_WM_7:13:0.310
chr7	128151223	128151326	reg1010681.p1	5.039	+	NM_018396 TSC_hg19_v1_chr7_+_128116813 AK302775 BC107586 AK002212 BC064929 BC121115 BC121116 AK299960	-34437	+	TSC_hg19_v1_chr7_+_128095931 NM_001098786 NM_013332 AF144755 AK024729 AK222583 BC008573 BC001863 BC093742 BC112183	-55308	+	TSC_hg19_v1_chr7_-_128050037 AK092452 BC033622 AK054667 AK122994 NM_000883 NM_001102605 NM_001142576 NM_183243	-101237	-	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	161072	+	TSC_hg19_v1_chr7_+_128349114 AK093161 AK302221 AX747964 BC040906 AK310426	197853	+	BC032842 AF367470 NM_032599 AK313608 AK310308 BC037248	204167	+	NM_018396|METTL2B|55798|methyltransferase like 2B##AK302775|METTL2B|55798|methyltransferase like 2B##BC107586|METTL2B|55798|methyltransferase like 2B##AK002212|METTL2B|55798|methyltransferase like 2B##BC064929|METTL2B|55798|methyltransferase like 2B##BC121115|METTL2B|55798|methyltransferase like 2B##BC121116|METTL2B|55798|methyltransferase like 2B##AK299960|METTL2B|55798|methyltransferase like 2B##NM_001098786|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_013332|HILPDA|29923|hypoxia inducible lipid droplet-associated##AF144755|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK024729|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK222583|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC008573|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC001863|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC093742|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC112183|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK092452|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC033622|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054667|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK122994|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_000883|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001102605|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142576|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_183243|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2##AK093161|FAM71F1|84691|family with sequence similarity 71, member F1##AK302221|FAM71F1|84691|family with sequence similarity 71, member F1##BC040906|FAM71F1|84691|family with sequence similarity 71, member F1##AK310426|FAM71F1|84691|family with sequence similarity 71, member F1##BC032842|FAM71F1|84691|family with sequence similarity 71, member F1##AF367470|FAM71F1|84691|family with sequence similarity 71, member F1##NM_032599|FAM71F1|84691|family with sequence similarity 71, member F1##AK313608|FAM71F1|84691|family with sequence similarity 71, member F1##AK310308|FAM71F1|84691|family with sequence similarity 71, member F1##BC037248|FAM71F1|84691|family with sequence similarity 71, member F1	0.866592	0.0	denovo_WM_7:34:0.249	denovo_WM_7:35:0.603
chr7	99966651	99966787	reg1008342.p1	5.039	+	AJ400845 NM_178238 AF161081	-11088	+	TSC_hg19_v1_chr7_+_99933808 AL834317	-32897	+	TSC_hg19_v1_chr7_+_99933747 AK056412 AK310352	-32964	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	4377	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	4486	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	59583	-	AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AL834317|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK056412|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK310352|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1	0.97823	0.218125	denovo_WM_7:-17:0.978	CTCF.p2:-102:0.218
chr8	95586496	95586588	reg1003896.p2	5.039	+	AB037850 AF116724 HQ258534 TSC_hg19_v1_chr8_-_95565696 AL832487 BC112288 BC113380 NM_015496 NM_183009	-20835	-	BC001965 AF112481 BC020668 AK290437 TSC_hg19_v1_chr8_-_95487344 NM_001205262 NM_012415	-99223	-	AF007866 NM_001205263	-137387	-	AK057998 TSC_hg19_v1_chr8_-_95651772	65192	-	TSC_hg19_v1_chr8_+_95653284 BX647570	66750	+	TSC_hg19_v1_chr8_+_95653392 NM_001034915 NM_001122825 NM_001122826 NM_001122827 NM_017697	66824	+	AB037850|KIAA1429|25962|KIAA1429##AF116724|KIAA1429|25962|KIAA1429##AL832487|KIAA1429|25962|KIAA1429##BC112288|KIAA1429|25962|KIAA1429##BC113380|KIAA1429|25962|KIAA1429##NM_015496|KIAA1429|25962|KIAA1429##NM_183009|KIAA1429|25962|KIAA1429##BC001965|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AF112481|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##BC020668|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AK290437|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205262|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_012415|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AF007866|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205263|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AK057998|LOC100288748|100288748|uncharacterized LOC100288748##BX647570|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001034915|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001122825|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001122826|ESRP1|54845|epithelial splicing regulatory protein 1##NM_001122827|ESRP1|54845|epithelial splicing regulatory protein 1##NM_017697|ESRP1|54845|epithelial splicing regulatory protein 1	0.892532	0.987214	CTCF.p2:11:0.987	denovo_WM_7:-95:0.692
chr17_ctg5_hap1	1360547	1360675	reg1010933.p1	5.038	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.378601	0.043936	denovo_WM_7:13:0.282	denovo_WM_7:29:0.287
chr5	79413399	79413548	reg1009408.p2	5.038	+	BC050456 TSC_hg19_v1_chr5_+_79331170 NM_003248 AK313587 Z19585	-82309	+	TSC_hg19_v1_chr5_-_79287069 AK091375 AX746944 BX538064 BC150295 AK296864 BX647596 NM_001010891 NM_001167741	-126515	-	TSC_hg19_v1_chr5_+_78985662 BC020856 NM_153610 AL832376	-427801	+	BC101280 BC101281 BC101282 BC101283 TSC_hg19_v1_chr5_-_79551866 AF498273 AK297467 NM_001174071 NM_001174072 NM_178276	138412	-	NM_032567 AK098575 AK314007 AF333098 BC033798	202342	+	TSC_hg19_v1_chr5_+_79703879 NM_001105251 NM_014733 BC032227 BX537424 CR933621 AB002303 BC030808	290380	+	BC050456|THBS4|7060|thrombospondin 4##NM_003248|THBS4|7060|thrombospondin 4##AK313587|THBS4|7060|thrombospondin 4##Z19585|THBS4|7060|thrombospondin 4##AK091375|MTX3|345778|metaxin 3##BX538064|MTX3|345778|metaxin 3##BC150295|MTX3|345778|metaxin 3##AK296864|MTX3|345778|metaxin 3##BX647596|MTX3|345778|metaxin 3##NM_001010891|MTX3|345778|metaxin 3##NM_001167741|MTX3|345778|metaxin 3##BC020856|CMYA5|202333|cardiomyopathy associated 5##NM_153610|CMYA5|202333|cardiomyopathy associated 5##AL832376|CMYA5|202333|cardiomyopathy associated 5##BC101280|SERINC5|256987|serine incorporator 5##BC101281|SERINC5|256987|serine incorporator 5##BC101282|SERINC5|256987|serine incorporator 5##BC101283|SERINC5|256987|serine incorporator 5##AF498273|SERINC5|256987|serine incorporator 5##AK297467|SERINC5|256987|serine incorporator 5##NM_001174071|SERINC5|256987|serine incorporator 5##NM_001174072|SERINC5|256987|serine incorporator 5##NM_178276|SERINC5|256987|serine incorporator 5##NM_032567|SPZ1|84654|spermatogenic leucine zipper 1##AK098575|SPZ1|84654|spermatogenic leucine zipper 1##AK314007|SPZ1|84654|spermatogenic leucine zipper 1##AF333098|SPZ1|84654|spermatogenic leucine zipper 1##BC033798|SPZ1|84654|spermatogenic leucine zipper 1##NM_001105251|ZFYVE16|9765|zinc finger, FYVE domain containing 16##NM_014733|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC032227|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BX537424|ZFYVE16|9765|zinc finger, FYVE domain containing 16##CR933621|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AB002303|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC030808|ZFYVE16|9765|zinc finger, FYVE domain containing 16	0.99904	0.0	denovo_WM_7:0:0.303	denovo_WM_7:0:0.303	denovo_WM_7:1:0.303
chr1	153868474	153868565	reg1009595.p1	5.037	+	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	-120653	+	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	-167966	+	TSC_hg19_v1_chr1_+_153651222 BC063304 AK025024 NM_000906 X15357	-217223	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	26932	-	TSC_hg19_v1_chr1_-_153919148 AB007945 NM_014856	50627	-	AY726597 AK096382 BC053562 TSC_hg19_v1_chr1_-_153931074 AF289574	62474	-	BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##BC063304|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK025024|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_000906|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##X15357|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B##AB007945|DENND4B|9909|DENN/MADD domain containing 4B##NM_014856|DENND4B|9909|DENN/MADD domain containing 4B##AY726597|CRTC2|200186|CREB regulated transcription coactivator 2##AK096382|CRTC2|200186|CREB regulated transcription coactivator 2##BC053562|CRTC2|200186|CREB regulated transcription coactivator 2##AF289574|CRTC2|200186|CREB regulated transcription coactivator 2	0.996364	0.0	
chr15	69022905	69023050	reg1010894.p2	5.037	+	AK289678 NM_001190457	-98651	+	NM_001190456	-114099	+	TSC_hg19_v1_chr15_+_68871402 NM_006091	-151634	+	AB463390 AY349171 BC106719 BC125143 BT007436 DQ893294 DQ896729 U60823 TSC_hg19_v1_chr15_-_69113208 U73477 X75090 AK223280	90172	-	TSC_hg19_v1_chr15_-_69113235 BC007200 BC000608 AF025684 AK312703	90250	-	TSC_hg19_v1_chr15_-_69113264 NM_006305	90283	-	AK289678|CORO2B|10391|coronin, actin binding protein, 2B##NM_001190457|CORO2B|10391|coronin, actin binding protein, 2B##NM_001190456|CORO2B|10391|coronin, actin binding protein, 2B##NM_006091|CORO2B|10391|coronin, actin binding protein, 2B##AY349171|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC106719|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC125143|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BT007436|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##DQ893294|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##DQ896729|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##U60823|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##U73477|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##X75090|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AK223280|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC007200|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##BC000608|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AF025684|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##AK312703|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A##NM_006305|ANP32A|8125|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	0.0	0.864857	CTCF.p2:-33:0.865
chr3	184135765	184135914	reg1009430.p1	5.037	+	AF209928 AF209929 AF209930 AF283325 NM_003741 AY358926 BC112345 AB208947 AK074147 AK293456 AK295632	-37799	+	BC130322 BC136338 BC143982 L33410 NM_000460 NM_001177597 NM_001177598 TSC_hg19_v1_chr3_-_184095936	-39901	-	TSC_hg19_v1_chr3_+_184081196 NM_006232 Z49199 BC000739 AB464044 EU446997	-54610	+	TSC_hg19_v1_chr3_+_184279572 NM_004443 BC052968	143743	+	AB590456 CU679591 AF320910 TSC_hg19_v1_chr3_-_184429853 AF295378 BC010056 NM_022149	293924	-	TSC_hg19_v1_chr3_+_184529961 NM_001009921 NM_015303 AK056661 AK292423 BX647915	394084	+	AF209928|CHRD|8646|chordin##AF209929|CHRD|8646|chordin##AF209930|CHRD|8646|chordin##AF283325|CHRD|8646|chordin##NM_003741|CHRD|8646|chordin##AY358926|CHRD|8646|chordin##BC112345|CHRD|8646|chordin##AB208947|CHRD|8646|chordin##AK074147|CHRD|8646|chordin##AK293456|CHRD|8646|chordin##AK295632|CHRD|8646|chordin##BC130322|THPO|7066|thrombopoietin##BC136338|THPO|7066|thrombopoietin##BC143982|THPO|7066|thrombopoietin##L33410|THPO|7066|thrombopoietin##NM_000460|THPO|7066|thrombopoietin##NM_001177597|THPO|7066|thrombopoietin##NM_001177598|THPO|7066|thrombopoietin##NM_006232|POLR2H|5437|polymerase (RNA) II (DNA directed) polypeptide H##Z49199|POLR2H|5437|polymerase (RNA) II (DNA directed) polypeptide H##BC000739|POLR2H|5437|polymerase (RNA) II (DNA directed) polypeptide H##EU446997|POLR2H|5437|polymerase (RNA) II (DNA directed) polypeptide H##NM_004443|EPHB3|2049|EPH receptor B3##BC052968|EPHB3|2049|EPH receptor B3##AF320910|MAGEF1|64110|melanoma antigen family F, 1##AF295378|MAGEF1|64110|melanoma antigen family F, 1##BC010056|MAGEF1|64110|melanoma antigen family F, 1##NM_022149|MAGEF1|64110|melanoma antigen family F, 1##NM_001009921|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##NM_015303|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK056661|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK292423|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BX647915|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)	0.0	0.994104	CTCF.p2:-23:0.994
chr7	55154134	55154284	reg1009259.p1	5.037	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-67263	+	TSC_hg19_v1_chr7_+_55086710 BC057802 BC094761 HQ912715 NM_005228 NM_201282 NM_201283 NM_201284 AF125253 U48722 X00588 BC070081 AK225422 K03193 AB209442 BC134346	-67464	+	TSC_hg19_v1_chr7_-_54826929 AF054184 AK311845 NM_001012456 NM_014302	-327288	-	AK095857 NM_018697	278931	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	279363	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	485831	-	AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##BC094761|EGFR|1956|epidermal growth factor receptor##HQ912715|EGFR|1956|epidermal growth factor receptor##NM_005228|EGFR|1956|epidermal growth factor receptor##NM_201282|EGFR|1956|epidermal growth factor receptor##NM_201283|EGFR|1956|epidermal growth factor receptor##NM_201284|EGFR|1956|epidermal growth factor receptor##AF125253|EGFR|1956|epidermal growth factor receptor##U48722|EGFR|1956|epidermal growth factor receptor##X00588|EGFR|1956|epidermal growth factor receptor##BC070081|EGFR|1956|epidermal growth factor receptor##AK225422|EGFR|1956|epidermal growth factor receptor##K03193|EGFR|1956|epidermal growth factor receptor##AB209442|EGFR|1956|epidermal growth factor receptor##AF054184|SEC61G|23480|Sec61 gamma subunit##AK311845|SEC61G|23480|Sec61 gamma subunit##NM_001012456|SEC61G|23480|Sec61 gamma subunit##NM_014302|SEC61G|23480|Sec61 gamma subunit##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.0	0.0	
chr17	67231762	67231933	reg1010840.p1	5.036	+	BC125231 BC125232 AY028898 NM_080284 TSC_hg19_v1_chr17_-_67138037 BC070125 AK308431 BC029852	-93772	-	BC062472 AK057068 AY028899 NM_080283	-174757	-	BC130280 BC143971 BC143972 AK304286 BC010392 AB020629 BC047765 BC094689 AK304360 AK295876 BC037309 BC024003 NM_007168	-280391	-	AY028900 NM_080282 AY247065	9123	-	AK096664 NM_018672	79926	-	TSC_hg19_v1_chr17_-_67323275 BC029426 AJ512612 AJ275973 AK292592 NM_172232	91442	-	BC125231|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC125232|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##AY028898|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##NM_080284|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC070125|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##AK308431|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC029852|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC062472|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##AK057068|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##AY028899|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##NM_080283|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##BC130280|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC143971|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC143972|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AK304286|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC010392|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AB020629|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC047765|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC094689|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AK304360|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AK295876|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC037309|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC024003|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##NM_007168|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AY028900|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##NM_080282|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##AY247065|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##AK096664|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_018672|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##BC029426|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ512612|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ275973|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AK292592|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_172232|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5	1.453232	0.999508	CTCF.p2:-53:1.000	denovo_WM_7:76:0.331	denovo_WM_7:91:0.324
chr20	34204705	34204885	reg1000492.p2	5.036	+	TSC_hg19_v1_chr20_+_34203752 AF262992 NM_003116 BC143783 AB464242	-960	+	BC029951 AY461812 TSC_hg19_v1_chr20_-_34195432	-9373	-	TSC_hg19_v1_chr20_+_34129833 CU679479 CU680742 AF091085	-74950	+	NM_003915	37035	-	TSC_hg19_v1_chr20_-_34243133 AB385382 DQ893493 DQ896437	38386	-	TSC_hg19_v1_chr20_-_34252792 AF345332 AF393214 BC001142 AB018308	47998	-	AF262992|SPAG4|6676|sperm associated antigen 4##NM_003116|SPAG4|6676|sperm associated antigen 4##BC143783|SPAG4|6676|sperm associated antigen 4##BC029951|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AY461812|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AF091085|ERGIC3|51614|ERGIC and golgi 3##NM_003915|CPNE1|8904|copine I##DQ893493|RBM12|10137|RNA binding motif protein 12##DQ896437|RBM12|10137|RNA binding motif protein 12##AF345332|RBM12|10137|RNA binding motif protein 12##AF393214|RBM12|10137|RNA binding motif protein 12##BC001142|CPNE1|8904|copine I##AB018308|RBM12|10137|RNA binding motif protein 12	0.0	0.0	
chr8	10982639	10982768	reg1012459.p2	5.036	+	TSC_hg19_v1_chr8_-_10697386 AF205718 AF418553 AJ344104	-285294	-	AY238941 AY523566 BC093762 BC143382 NM_017884 TSC_hg19_v1_chr8_-_10697379 AY029161 AK313715 BC015479 AK296724	-285369	-	AJ409320 BT006693 CU687196 AB464717 BC071947 BC004299 AK055556 AK223574 NM_031439 TSC_hg19_v1_chr8_-_10588025	-394719	-	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	76162	-	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	159309	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	159652	+	AF205718|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AF418553|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ344104|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY238941|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY523566|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC093762|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC143382|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##NM_017884|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AK313715|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC015479|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ409320|SOX7|83595|SRY (sex determining region Y)-box 7##BT006693|SOX7|83595|SRY (sex determining region Y)-box 7##BC071947|SOX7|83595|SRY (sex determining region Y)-box 7##BC004299|SOX7|83595|SRY (sex determining region Y)-box 7##AK055556|SOX7|83595|SRY (sex determining region Y)-box 7##AK223574|SOX7|83595|SRY (sex determining region Y)-box 7##NM_031439|SOX7|83595|SRY (sex determining region Y)-box 7##AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9	1.972096	0.0	denovo_WM_7:-75:0.846	denovo_WM_7:-97:0.783
chr1	15930310	15930407	reg1010377.p2	5.035	+	DQ893530 DQ896746 TSC_hg19_v1_chr1_-_15911519 AY057097 AK027037 AK130034 AK225366 BC005090 NM_024758	-18818	-	TSC_hg19_v1_chr1_+_15853357 AK091848 AX747219 AB023179 NM_015291 CR749259 CR749567 AL833299 AK292479 BX648982	-76993	+	BC047363 TSC_hg19_v1_chr1_+_15853342	-77033	+	TSC_hg19_v1_chr1_+_15943952 AK293006 NM_032341	13594	+	TSC_hg19_v1_chr1_+_15944018 BC006011	13679	+	TSC_hg19_v1_chr1_+_15944063 CU675225	13753	+	DQ893530|AGMAT|79814|agmatine ureohydrolase (agmatinase)##DQ896746|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AY057097|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK130034|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK225366|AGMAT|79814|agmatine ureohydrolase (agmatinase)##BC005090|AGMAT|79814|agmatine ureohydrolase (agmatinase)##NM_024758|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK091848|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AB023179|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##NM_015291|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749259|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749567|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AL833299|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK292479|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BX648982|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BC047363|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK293006|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##NM_032341|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##BC006011|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)	0.0	0.0	
chr7	28744963	28745098	reg1008597.p1	5.035	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	-19347	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-214265	+	L05911 NM_004904	-269797	+	CU690330 TSC_hg19_v1_chr7_-_28997732	252667	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	252899	-	AK293803 NM_014817 TSC_hg19_v1_chr7_-_28998036	253002	-	L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats##NM_014817|TRIL|9865|TLR4 interactor with leucine-rich repeats	1.227838	0.0	denovo_WM_7:-38:0.271	denovo_WM_7:-39:0.271	denovo_WM_7:-40:0.394
chr8	59057810	59057961	reg1008984.p1	5.035	+	TSC_hg19_v1_chr8_+_58907119 AK092221 NM_147189	-150728	+	TSC_hg19_v1_chr8_-_57906427 AK000428 NM_017813	-1151459	-	BC067814 TSC_hg19_v1_chr8_-_57906402	-1151483	-	BC113645 NM_001077619 TSC_hg19_v1_chr8_+_59323919 AK126300 HQ258392 AL831990 AL833075 BX647876	266000	+	X56088 M93133 BC101777 BC112184 NM_000780	354822	-	NM_001007067 NM_001007068 NM_001007069 NM_001007070 NM_005625 TSC_hg19_v1_chr8_+_59465774 AF000652	407867	+	AK092221|FAM110B|90362|family with sequence similarity 110, member B##NM_147189|FAM110B|90362|family with sequence similarity 110, member B##AK000428|IMPAD1|54928|inositol monophosphatase domain containing 1##NM_017813|IMPAD1|54928|inositol monophosphatase domain containing 1##BC067814|IMPAD1|54928|inositol monophosphatase domain containing 1##BC113645|UBXN2B|137886|UBX domain protein 2B##NM_001077619|UBXN2B|137886|UBX domain protein 2B##AK126300|UBXN2B|137886|UBX domain protein 2B##HQ258392|UBXN2B|137886|UBX domain protein 2B##AL831990|UBXN2B|137886|UBX domain protein 2B##AL833075|UBXN2B|137886|UBX domain protein 2B##BX647876|UBXN2B|137886|UBX domain protein 2B##X56088|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##M93133|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC101777|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC112184|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_000780|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_001007067|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007068|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007069|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007070|SDCBP|6386|syndecan binding protein (syntenin)##NM_005625|SDCBP|6386|syndecan binding protein (syntenin)##AF000652|SDCBP|6386|syndecan binding protein (syntenin)	0.994137	0.0	denovo_WM_7:-2:0.459	denovo_WM_7:-3:0.459
chr1	206889287	206889463	reg1010420.p1	5.034	+	TSC_hg19_v1_chr1_+_206858308 BC036060 NM_004759 NM_032960 BC052584 AB590627 X75346	-30904	+	AB529015 BC037269 AF327561 TSC_hg19_v1_chr1_+_206809124 AF186774	-80265	+	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	-80531	+	AF043333 AY029171 CR541993 CR542028 AB587432 M57627 BC104252 BC104253 BC022315 NM_000572 EU751618 EU751619	56504	-	AY040367 NM_153758 AB463800	82851	+	AF453946 NM_013371	112846	+	BC036060|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_004759|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_032960|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC052584|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##X75346|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC037269|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF327561|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186774|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF043333|IL10|3586|interleukin 10##AY029171|IL10|3586|interleukin 10##CR541993|IL10|3586|interleukin 10##CR542028|IL10|3586|interleukin 10##M57627|IL10|3586|interleukin 10##BC104252|IL10|3586|interleukin 10##BC104253|IL10|3586|interleukin 10##BC022315|IL10|3586|interleukin 10##NM_000572|IL10|3586|interleukin 10##AY040367|IL19|29949|interleukin 19##NM_153758|IL19|29949|interleukin 19##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19	1.984201	0.0	denovo_WM_7:-22:0.741	denovo_WM_7:78:0.871
chr14	105389031	105389124	reg1009342.p1	5.034	+	TSC_hg19_v1_chr14_+_105331604 AB006622 NM_001112726 NM_015005	-57397	+	TSC_hg19_v1_chr14_+_105267378 BC157833 BC171822	-121635	+	TSC_hg19_v1_chr14_+_105266890 AX721091 NM_001137601	-122157	+	TSC_hg19_v1_chr14_+_105391152 AK296188	2074	+	TSC_hg19_v1_chr14_+_105391155 AK295352	2080	+	TSC_hg19_v1_chr14_+_105391174 AY358843 NM_138790	2099	+	AB006622|KIAA0284|283638|KIAA0284##NM_001112726|KIAA0284|283638|KIAA0284##NM_015005|KIAA0284|283638|KIAA0284##BC157833|ZBTB42|100128927|zinc finger and BTB domain containing 42##BC171822|ZBTB42|100128927|zinc finger and BTB domain containing 42##AX721091|ZBTB42|100128927|zinc finger and BTB domain containing 42##NM_001137601|ZBTB42|100128927|zinc finger and BTB domain containing 42##AK296188|PLD4|122618|phospholipase D family, member 4##AK295352|PLD4|122618|phospholipase D family, member 4##AY358843|PLD4|122618|phospholipase D family, member 4##NM_138790|PLD4|122618|phospholipase D family, member 4	0.990761	0.0	denovo_WM_7:-34:0.491	denovo_WM_7:-35:0.286	denovo_WM_7:-36:0.214
chr6	15280764	15280928	reg1008279.p2	5.034	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-31733	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-31945	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-34434	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	382331	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	382444	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	848456	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.998957	0.0	denovo_WM_7:22:0.314	denovo_WM_7:23:0.314	denovo_WM_7:24:0.314
chr19	17377633	17377795	reg1007013.p1	5.033	+	AB026290 AB040046 AK300617 AK096028 BC027910 NM_031941 AK315239 AK292031	-2167	-	AB307712 AB463945 AK298764 HQ692851 TSC_hg19_v1_chr19_-_17356214 BC063018 BC084544 BC002669 NM_005234 AK314961	-21574	-	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	-40680	+	TSC_hg19_v1_chr19_+_17378251 AK308590 AK299493 NM_001033549 NM_014173 AF161491 AK025970 AK301193 BC006244 AL136692 AK225047	491	+	TSC_hg19_v1_chr19_+_17378266 AK000578 BC091491 BC000788	580	+	AK303628 NM_152363	14739	+	AB026290|USHBP1|83878|Usher syndrome 1C binding protein 1##AB040046|USHBP1|83878|Usher syndrome 1C binding protein 1##AK300617|USHBP1|83878|Usher syndrome 1C binding protein 1##AK096028|USHBP1|83878|Usher syndrome 1C binding protein 1##BC027910|USHBP1|83878|Usher syndrome 1C binding protein 1##NM_031941|USHBP1|83878|Usher syndrome 1C binding protein 1##AK315239|USHBP1|83878|Usher syndrome 1C binding protein 1##AK292031|USHBP1|83878|Usher syndrome 1C binding protein 1##AB307712|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AK298764|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##HQ692851|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC063018|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC084544|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC002669|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##NM_005234|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AK314961|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1##AK308590|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK299493|BABAM1|29086|BRISC and BRCA1 A complex member 1##NM_001033549|BABAM1|29086|BRISC and BRCA1 A complex member 1##NM_014173|BABAM1|29086|BRISC and BRCA1 A complex member 1##AF161491|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK025970|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK301193|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC006244|BABAM1|29086|BRISC and BRCA1 A complex member 1##AL136692|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK225047|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK000578|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC091491|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC000788|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK303628|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##NM_152363|ANKLE1|126549|ankyrin repeat and LEM domain containing 1	0.915135	0.0	denovo_WM_7:-56:0.345	denovo_WM_7:-57:0.259
chr10	27147224	27147400	reg1003546.p3	5.032	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-89495	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-160666	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-160728	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	2528	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	2627	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	2693	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	0.994599	0.0	denovo_WM_7:77:0.677	denovo_WM_7:78:0.253
chr12	32049627	32049801	reg1009632.p2	5.032	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	-104510	-	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-167658	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-167740	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	62617	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	62680	+	TSC_hg19_v1_chr12_+_32259750 BC010091	210000	+	BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)	0.0	0.0	
chr5	67583828	67584008	reg1010685.p1	5.032	+	TSC_hg19_v1_chr5_+_67511602 BC094795	-72311	+	TSC_hg19_v1_chr5_+_67511583 NM_181523	-72338	+	BC109069 BC109070 D83597 NM_005582 AK313177	-1091318	-	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	376	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	2628	+	AK094785 NM_001242466 AK294919	4534	+	BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	0.0	0.0	
chr19	41279337	41279517	reg1011343.p1	5.031	+	TSC_hg19_v1_chr19_+_41257100 AK293140 AK313182 X06347 BC008290 AB464219 CU674198	-22228	+	NM_004596 TSC_hg19_v1_chr19_+_41256782 BC000405	-22651	+	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	-23025	-	NM_001202553	1654	+	NM_006533 X75450 BC005910 BT007044 CR541648	1937	+	TSC_hg19_v1_chr19_+_41284141 NM_016154	4677	+	AK293140|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK313182|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##X06347|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC008290|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##NM_004596|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC000405|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54##NM_001202553|MIA|8190|melanoma inhibitory activity##NM_006533|MIA|8190|melanoma inhibitory activity##X75450|MIA|8190|melanoma inhibitory activity##BC005910|MIA|8190|melanoma inhibitory activity##BT007044|MIA|8190|melanoma inhibitory activity##CR541648|MIA|8190|melanoma inhibitory activity##NM_016154|RAB4B|53916|RAB4B, member RAS oncogene family	1.981427	0.0	denovo_WM_7:101:0.949
chr5	137117905	137118020	reg1010525.p2	5.031	+	TSC_hg19_v1_chr5_-_137090053 AK311328	-27890	-	BC012980 BC018949 TSC_hg19_v1_chr5_-_137090040 BC028976 BC030249 NM_006805	-27923	-	TSC_hg19_v1_chr5_-_137090036 BC018800	-27928	-	NM_001135940 NM_006790 AK300088 TSC_hg19_v1_chr5_+_137203548	85584	+	AF133820 AK300076 AK307620 AK312733 BC005376 TSC_hg19_v1_chr5_+_137203565 AF144477	85604	+	NM_014386 BC044581 AK301924 BC038714 AF182034 AF118125 CU692208	107189	+	BC012980|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##BC018949|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##BC028976|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##BC030249|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##NM_006805|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##BC018800|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##NM_001135940|MYOT|9499|myotilin##NM_006790|MYOT|9499|myotilin##AK300088|MYOT|9499|myotilin##AF133820|MYOT|9499|myotilin##AK300076|MYOT|9499|myotilin##AK307620|MYOT|9499|myotilin##AK312733|MYOT|9499|myotilin##BC005376|MYOT|9499|myotilin##AF144477|MYOT|9499|myotilin##NM_014386|PKD2L2|27039|polycystic kidney disease 2-like 2##BC044581|PKD2L2|27039|polycystic kidney disease 2-like 2##AK301924|PKD2L2|27039|polycystic kidney disease 2-like 2##BC038714|PKD2L2|27039|polycystic kidney disease 2-like 2##AF182034|PKD2L2|27039|polycystic kidney disease 2-like 2##AF118125|PKD2L2|27039|polycystic kidney disease 2-like 2	0.996168	0.0	denovo_WM_7:-32:0.249	denovo_WM_7:-33:0.249	denovo_WM_7:-34:0.249	denovo_WM_7:-35:0.249
chr5	17229019	17229153	reg1008134.p1	5.031	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-11246	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-11474	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-292701	-	AK295087 BC031051 NM_001167667 NM_004934	2759236	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4230523	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4230562	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.991304	0.0	denovo_WM_7:46:0.798
chr15	101548601	101548682	reg1002437.p2	5.030	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-89129	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-89167	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-128570	+	AB071402 TSC_hg19_v1_chr15_-_101791795	243095	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	243494	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	269022	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.0	0.0	
chr16	78768546	78768677	reg1007740.p1	5.030	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-635156	+	NM_001244755	-705626	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-712161	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	866004	-	AF125108 NM_130897 BC054892 BC035232	1806277	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	2069436	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	0.0	0.0	
chr17	80604375	80604555	reg1011453.p2	5.030	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-126875	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-187823	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-187902	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	1818	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	52069	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	70141	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	1.371463	0.0	denovo_WM_7:-65:0.373
chr20	21080662	21080795	reg1010177.p2	5.030	+	DQ310704 BC171842 TSC_hg19_v1_chr20_-_20693287 NM_020343	-387500	-	TSC_hg19_v1_chr20_+_20348747 M93119 NM_002196	-731974	+	NM_001167816 AL117439	-1043408	+	NM_001163022 NM_001163023 NM_018474 TSC_hg19_v1_chr20_+_21106657 AF451990 BC039296 AK293567 AK293166 AK025476	25936	+	TSC_hg19_v1_chr20_+_21106722 BC105093 BC113370 AK295355 BC045826	25999	+	BC142960 TSC_hg19_v1_chr20_+_21283980 NM_012255 AK001573 AF064257 BC131775 AY382900 AK303312 AK314602 AL136841 AF152169 BC000315	203247	+	DQ310704|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##BC171842|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##NM_020343|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##M93119|INSM1|3642|insulinoma-associated 1##NM_002196|INSM1|3642|insulinoma-associated 1##NM_001167816|C20orf26|26074|chromosome 20 open reading frame 26##AL117439|C20orf26|26074|chromosome 20 open reading frame 26##NM_001163022|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163023|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_018474|PLK1S1|55857|polo-like kinase 1 substrate 1##AF451990|PLK1S1|55857|polo-like kinase 1 substrate 1##BC039296|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293567|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293166|PLK1S1|55857|polo-like kinase 1 substrate 1##AK025476|PLK1S1|55857|polo-like kinase 1 substrate 1##BC105093|PLK1S1|55857|polo-like kinase 1 substrate 1##BC113370|PLK1S1|55857|polo-like kinase 1 substrate 1##AK295355|PLK1S1|55857|polo-like kinase 1 substrate 1##BC045826|PLK1S1|55857|polo-like kinase 1 substrate 1##BC142960|XRN2|22803|5'-3' exoribonuclease 2##NM_012255|XRN2|22803|5'-3' exoribonuclease 2##AK001573|XRN2|22803|5'-3' exoribonuclease 2##AF064257|XRN2|22803|5'-3' exoribonuclease 2##BC131775|XRN2|22803|5'-3' exoribonuclease 2##AY382900|XRN2|22803|5'-3' exoribonuclease 2##AK303312|XRN2|22803|5'-3' exoribonuclease 2##AK314602|XRN2|22803|5'-3' exoribonuclease 2##AL136841|XRN2|22803|5'-3' exoribonuclease 2##AF152169|XRN2|22803|5'-3' exoribonuclease 2##BC000315|XRN2|22803|5'-3' exoribonuclease 2	0.992575	0.0	denovo_WM_7:11:0.592	denovo_WM_7:12:0.291
chr20	291084	291264	reg1002760.p1	5.030	+	TSC_hg19_v1_chr20_+_278213 BC069238 NM_033089 AK025768 BC107584 BC036469	-12965	+	AK302223 TSC_hg19_v1_chr20_-_271367 BC134417 BC137450 BC144648 BC144649 AK097394 NM_080571 NM_153269	-19810	-	TSC_hg19_v1_chr20_-_271080 AK091924 AX747257 AK304526 BX640715 BC051762	-20100	-	TSC_hg19_v1_chr20_+_306226 BC067361 NM_006943 U35612 BC028103	15062	+	TSC_hg19_v1_chr20_+_327371 NM_024958 AK290527	36231	+	TSC_hg19_v1_chr20_+_327754 AK026982	36575	+	BC069238|ZCCHC3|85364|zinc finger, CCHC domain containing 3##NM_033089|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK025768|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC107584|ZCCHC3|85364|zinc finger, CCHC domain containing 3##BC036469|ZCCHC3|85364|zinc finger, CCHC domain containing 3##AK302223|C20orf96|140680|chromosome 20 open reading frame 96##BC134417|C20orf96|140680|chromosome 20 open reading frame 96##BC137450|C20orf96|140680|chromosome 20 open reading frame 96##BC144648|C20orf96|140680|chromosome 20 open reading frame 96##BC144649|C20orf96|140680|chromosome 20 open reading frame 96##AK097394|C20orf96|140680|chromosome 20 open reading frame 96##NM_080571|C20orf96|140680|chromosome 20 open reading frame 96##NM_153269|C20orf96|140680|chromosome 20 open reading frame 96##AK091924|C20orf96|140680|chromosome 20 open reading frame 96##AK304526|C20orf96|140680|chromosome 20 open reading frame 96##BX640715|C20orf96|140680|chromosome 20 open reading frame 96##BC051762|C20orf96|140680|chromosome 20 open reading frame 96##BC067361|SOX12|6666|SRY (sex determining region Y)-box 12##NM_006943|SOX12|6666|SRY (sex determining region Y)-box 12##U35612|SOX12|6666|SRY (sex determining region Y)-box 12##BC028103|SOX12|6666|SRY (sex determining region Y)-box 12##NM_024958|NRSN2|80023|neurensin 2##AK290527|NRSN2|80023|neurensin 2##AK026982|NRSN2|80023|neurensin 2	0.0	0.0	
chr6	44396674	44396802	reg1007692.p1	5.030	+	TSC_hg19_v1_chr6_+_44355461 AK128737 AK299738 BC001568 AB007892 AB590067 CU674768 DQ891623 DQ894814 U86753	-41238	+	NM_001253 TSC_hg19_v1_chr6_+_44355294	-41466	+	NM_145026 AK058171	-86298	+	NM_001015051 NM_001024630 AF053952	899318	+	AF073930 NM_003599 TSC_hg19_v1_chr6_-_45345614 AK303838 BC035816 BC050384 NM_181356 AK313874	948937	-	TSC_hg19_v1_chr6_+_45389825 NM_004348	993127	+	AK128737|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##AK299738|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##BC001568|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##AB007892|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##DQ891623|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##DQ894814|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##U86753|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##NM_001253|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##NM_145026|SPATS1|221409|spermatogenesis associated, serine-rich 1##AK058171|SPATS1|221409|spermatogenesis associated, serine-rich 1##NM_001015051|RUNX2|860|runt-related transcription factor 2##NM_001024630|RUNX2|860|runt-related transcription factor 2##AF053952|RUNX2|860|runt-related transcription factor 2##AF073930|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##NM_003599|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##AK303838|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##BC035816|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##BC050384|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##NM_181356|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##AK313874|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##NM_004348|RUNX2|860|runt-related transcription factor 2	0.999671	0.0	
chr8	118993023	118993140	reg1005672.p2	5.030	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-460039	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-460123	+	NM_001172814 NM_173851	-845745	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	130880	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	641044	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	641126	-	BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12	0.0	0.0	
chr8	142014926	142015060	reg1010320.p1	5.030	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	-3737	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-369369	-	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-493430	+	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	123744	+	AK128212 NM_001080431	223679	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	249197	-	AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4	3.061072	0.0	denovo_WM_7:-38:0.232	denovo_WM_7:-39:0.232	denovo_WM_7:-40:0.232	denovo_WM_7:-41:0.232	denovo_WM_7:100:0.331	denovo_WM_7:101:0.331	denovo_WM_7:102:0.331
chr16	25041812	25041920	reg1010801.p1	5.029	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-15174	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-15254	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-72974	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	36423	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	81195	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	81331	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	0.802507	0.0	denovo_WM_7:-27:0.722
chr3	101947088	101947240	reg1009796.p1	5.029	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-378790	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-400204	+	AK289689 NM_001134456	-448879	+	AY090780 NM_175056 BC143817	206703	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3138416	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3138658	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	0.995638	0.0	denovo_WM_7:14:0.441	denovo_WM_7:15:0.441
chr16	4798078	4798244	reg1010956.p2	5.028	+	TSC_hg19_v1_chr16_+_4784487 AK301794 BX648126	-13637	+	TSC_hg19_v1_chr16_+_4784320 AF447587 BC035024	-13831	+	TSC_hg19_v1_chr16_+_4784272 NM_139170	-13886	+	TSC_hg19_v1_chr16_-_4817164 AK291792 NM_021646 AK297993	19023	-	BC024017 AX721308 AX721313 BC035619 AK058139 DQ456996 AK098718 DQ517531 EF620906 NM_001154458 NM_144605	40257	-	BC035868 NM_001253790 BC048326 NM_001253791	40265	+	AK301794|C16orf71|146562|chromosome 16 open reading frame 71##BX648126|C16orf71|146562|chromosome 16 open reading frame 71##AF447587|C16orf71|146562|chromosome 16 open reading frame 71##BC035024|C16orf71|146562|chromosome 16 open reading frame 71##NM_139170|C16orf71|146562|chromosome 16 open reading frame 71##AK291792|ZNF500|26048|zinc finger protein 500##NM_021646|ZNF500|26048|zinc finger protein 500##AK297993|ZNF500|26048|zinc finger protein 500##BC024017|SEPT12|124404|septin 12##BC035619|SEPT12|124404|septin 12##AK058139|SEPT12|124404|septin 12##DQ456996|SEPT12|124404|septin 12##AK098718|SEPT12|124404|septin 12##DQ517531|SEPT12|124404|septin 12##EF620906|SEPT12|124404|septin 12##NM_001154458|SEPT12|124404|septin 12##NM_144605|SEPT12|124404|septin 12##BC035868|LOC440335|440335|uncharacterized LOC440335##NM_001253790|LOC440335|440335|uncharacterized LOC440335##BC048326|LOC440335|440335|uncharacterized LOC440335##NM_001253791|LOC440335|440335|uncharacterized LOC440335	0.995508	0.0	
chr1	8054437	8054600	reg1008105.p2	5.028	+	TSC_hg19_v1_chr1_+_8021770 BC008188	-32722	+	AF021819 TSC_hg19_v1_chr1_+_8021756 AK130886 AK312000	-32758	+	TSC_hg19_v1_chr1_+_8021722 NM_001123377 NM_007262	-32797	+	AB528431 AJ276373 DQ892137 DQ895331 BC012839 TSC_hg19_v1_chr1_-_8075752	21197	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	31843	-	NM_018948 TSC_hg19_v1_chr1_-_8086396	31880	-	BC008188|PARK7|11315|parkinson protein 7##AF021819|PARK7|11315|parkinson protein 7##AK130886|PARK7|11315|parkinson protein 7##AK312000|PARK7|11315|parkinson protein 7##NM_001123377|PARK7|11315|parkinson protein 7##NM_007262|PARK7|11315|parkinson protein 7##AJ276373|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ892137|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ895331|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC012839|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1	0.995293	0.0	denovo_WM_7:74:0.948
chr11	57560289	57560424	reg1008153.p2	5.027	+	NM_001085458 NM_001085459 NM_001085460 NM_001085461 NM_001085462 NM_001085463 NM_001085464 NM_001085465 NM_001085466 NM_001085467 NM_001085468 NM_001085469 NM_001206883 NM_001206884 NM_001206885 NM_001206886 NM_001206887 NM_001206888 NM_001206889 NM_001206890 NM_001206891 NM_001331 TSC_hg19_v1_chr11_+_57529331 AF062317 AF062318 AF062319 AF062320 AF062321 AF062322 AF062323 AF062324 AF062325 AF062326 AF062327 AF062328 AF062329 AF062330 AF062331 AF062332 AF062333 AF062334 AF062335 AF062336 AF062337 AF062338 AF062339 AF062340 AF062341 AF062342 AF062343 AF062344 BC075795	-31017	+	NM_001145101	-41104	-	TSC_hg19_v1_chr11_+_57508992 BC021122	-51356	+	BC110819 NM_001005212	230996	+	BC151146 BC151147 NM_001005186	238056	+	NM_001005211	326559	-	NM_001085458|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085459|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085460|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085461|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085462|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085463|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085464|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085465|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085466|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085467|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085468|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085469|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206883|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206884|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206885|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206886|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206887|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206888|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206889|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206890|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206891|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062317|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062318|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062319|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062320|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062321|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062322|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062323|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062324|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062325|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062326|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062327|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062328|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062329|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062330|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062332|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062333|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062334|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062335|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062336|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062337|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062338|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062339|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062340|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062341|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062342|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062343|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062344|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC075795|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001145101|BTBD18|643376|BTB (POZ) domain containing 18##BC021122|C11orf31|280636|chromosome 11 open reading frame 31##BC110819|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##NM_001005212|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##BC151146|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##BC151147|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005186|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005211|OR9I1|219954|olfactory receptor, family 9, subfamily I, member 1	0.995661	0.0	
chr12	12658933	12659102	reg1010969.p1	5.027	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-148852	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-155845	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-239175	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	56383	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	105778	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	105866	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.0	0.0	
chr7	129045371	129045509	reg1003588.p1	5.027	+	AK316073 NM_001130722	-29957	+	TSC_hg19_v1_chr7_+_129008062 AK025372	-37352	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	-37454	+	TSC_hg19_v1_chr7_+_129074283 NM_001134336 NM_020704 AK290165 BC019064 AB032996 CU676366 AB463039 AM392619 AM392944 AM392960 AM393447	28833	+	BC050400 NM_001195243 BC035417	96924	+	TSC_hg19_v1_chr7_-_129251474 AK123679	206038	-	AK316073|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130722|AHCYL2|23382|adenosylhomocysteinase-like 2##AK025372|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001134336|FAM40B|57464|family with sequence similarity 40, member B##NM_020704|FAM40B|57464|family with sequence similarity 40, member B##AK290165|FAM40B|57464|family with sequence similarity 40, member B##BC019064|FAM40B|57464|family with sequence similarity 40, member B##AB032996|FAM40B|57464|family with sequence similarity 40, member B##AM392619|FAM40B|57464|family with sequence similarity 40, member B##AM392944|FAM40B|57464|family with sequence similarity 40, member B##AM392960|FAM40B|57464|family with sequence similarity 40, member B##AM393447|FAM40B|57464|family with sequence similarity 40, member B##BC050400|LOC100287482|100287482|uncharacterized LOC100287482##NM_001195243|LOC100287482|100287482|uncharacterized LOC100287482##BC035417|LOC100287482|100287482|uncharacterized LOC100287482	1.336715	0.0	denovo_WM_7:-78:0.680
chr9	1267286	1267422	reg1006772.p1	5.027	+	AF130729 NM_181872	-216745	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-216984	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	-217010	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	747942	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	1354453	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	1354720	+	AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chr12	4432205	4432385	reg1011078.p1	5.026	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	-1904	+	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	-49251	+	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	-449795	-	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	56505	-	BC121097 BC121098 NM_020996 X63454	122484	-	TSC_hg19_v1_chr12_-_4647633 AJ272205 BC016908	215324	-	NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23##BC121097|FGF6|2251|fibroblast growth factor 6##BC121098|FGF6|2251|fibroblast growth factor 6##NM_020996|FGF6|2251|fibroblast growth factor 6##X63454|FGF6|2251|fibroblast growth factor 6##AJ272205|C12orf4|57102|chromosome 12 open reading frame 4##BC016908|C12orf4|57102|chromosome 12 open reading frame 4	0.998313	0.0	denovo_WM_7:-16:0.313	denovo_WM_7:-17:0.313	denovo_WM_7:-18:0.313
chr22	30474980	30475160	reg1006267.p2	5.026	+	BC142713 TSC_hg19_v1_chr22_+_30279201 AB002369 BC152455	-195809	+	TSC_hg19_v1_chr22_+_30279167 BC151217 AK289581 NM_021090 NM_153050 NM_153051	-195941	+	BC025368 TSC_hg19_v1_chr22_-_30234264 AK303257 NM_001242906 NM_032204	-240798	-	BC030013 NM_152510	1382	+	AB527710 X13967 BC093733 BC093735 BC143305 BC069540 TSC_hg19_v1_chr22_-_30642749 AK315310 NM_002309	167669	-	CR541703 AB463155 CU013134 CU013422 DQ892537 DQ895748 CR456534 BC011589 NM_020530 TSC_hg19_v1_chr22_-_30662841	187745	-	BC142713|MTMR3|8897|myotubularin related protein 3##AB002369|MTMR3|8897|myotubularin related protein 3##BC152455|MTMR3|8897|myotubularin related protein 3##BC151217|MTMR3|8897|myotubularin related protein 3##AK289581|MTMR3|8897|myotubularin related protein 3##NM_021090|MTMR3|8897|myotubularin related protein 3##NM_153050|MTMR3|8897|myotubularin related protein 3##NM_153051|MTMR3|8897|myotubularin related protein 3##BC025368|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##AK303257|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##NM_001242906|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##NM_032204|ASCC2|84164|activating signal cointegrator 1 complex subunit 2##BC030013|HORMAD2|150280|HORMA domain containing 2##NM_152510|HORMAD2|150280|HORMA domain containing 2##X13967|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC093733|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC093735|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC143305|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC069540|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##AK315310|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##NM_002309|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##CR541703|OSM|5008|oncostatin M##CU013134|OSM|5008|oncostatin M##CU013422|OSM|5008|oncostatin M##DQ892537|OSM|5008|oncostatin M##DQ895748|OSM|5008|oncostatin M##CR456534|OSM|5008|oncostatin M##BC011589|OSM|5008|oncostatin M##NM_020530|OSM|5008|oncostatin M	0.98764	0.0	denovo_WM_7:44:0.959
chr3	87854976	87855109	reg1008622.p1	5.026	+	AB587506 L18781 X72215 X62429 D10216 NM_000306 NM_001122757	-529369	-	TSC_hg19_v1_chr3_+_87276461 NM_001244644 NM_014043 AK296072 AK002180 AL080122 AK002165 AK316585 AK222654 AF151842 BC001553 EU832121 EU832215 AB590670 CR533456	-578507	+	BC094780 TSC_hg19_v1_chr3_-_87040272	-814772	-	NM_000866	176683	+	BC052980 TSC_hg19_v1_chr3_-_88108150 AL117392 NM_001008390 NM_003663	253101	-	AF543494 NM_018293	333219	+	L18781|POU1F1|5449|POU class 1 homeobox 1##X72215|POU1F1|5449|POU class 1 homeobox 1##X62429|POU1F1|5449|POU class 1 homeobox 1##D10216|POU1F1|5449|POU class 1 homeobox 1##NM_000306|POU1F1|5449|POU class 1 homeobox 1##NM_001122757|POU1F1|5449|POU class 1 homeobox 1##NM_001244644|CHMP2B|25978|charged multivesicular body protein 2B##NM_014043|CHMP2B|25978|charged multivesicular body protein 2B##AK296072|CHMP2B|25978|charged multivesicular body protein 2B##AK002180|CHMP2B|25978|charged multivesicular body protein 2B##AL080122|CHMP2B|25978|charged multivesicular body protein 2B##AK002165|CHMP2B|25978|charged multivesicular body protein 2B##AK316585|CHMP2B|25978|charged multivesicular body protein 2B##AK222654|CHMP2B|25978|charged multivesicular body protein 2B##AF151842|CHMP2B|25978|charged multivesicular body protein 2B##BC001553|CHMP2B|25978|charged multivesicular body protein 2B##EU832121|CHMP2B|25978|charged multivesicular body protein 2B##EU832215|CHMP2B|25978|charged multivesicular body protein 2B##CR533456|CHMP2B|25978|charged multivesicular body protein 2B##BC094780|VGLL3|389136|vestigial like 3 (Drosophila)##NM_000866|HTR1F|3355|5-hydroxytryptamine (serotonin) receptor 1F##BC052980|CGGBP1|8545|CGG triplet repeat binding protein 1##AL117392|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_001008390|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_003663|CGGBP1|8545|CGG triplet repeat binding protein 1##AF543494|ZNF654|55279|zinc finger protein 654##NM_018293|ZNF654|55279|zinc finger protein 654	0.897102	0.0	denovo_WM_7:-81:0.709
chr4	128817800	128817951	reg1010597.p1	5.026	+	TSC_hg19_v1_chr4_+_128802067 AK303399 AB006972 Y13115 DQ894189 CU690262 AK302858 NM_001190801	-15644	+	NM_001190799 NM_014264 AK314238 BC036023 TSC_hg19_v1_chr4_+_128802063	-15836	+	TSC_hg19_v1_chr4_+_128703491 AY290862 AB023421 EF197155	-114283	+	TSC_hg19_v1_chr4_-_128886304 CU688672 AK294439 AK315596 AK074564	68440	-	TSC_hg19_v1_chr4_+_128886524 BC111400 NM_001039717 BC058898 BC034253	68581	+	TSC_hg19_v1_chr4_+_128886618 AK024759 BC058847 BC075793 BC128142 BC128143	68764	+	AK303399|PLK4|10733|polo-like kinase 4##AB006972|PLK4|10733|polo-like kinase 4##Y13115|PLK4|10733|polo-like kinase 4##DQ894189|PLK4|10733|polo-like kinase 4##AK302858|PLK4|10733|polo-like kinase 4##NM_001190801|PLK4|10733|polo-like kinase 4##NM_001190799|PLK4|10733|polo-like kinase 4##NM_014264|PLK4|10733|polo-like kinase 4##AK314238|PLK4|10733|polo-like kinase 4##BC036023|PLK4|10733|polo-like kinase 4##AY290862|HSPA4L|22824|heat shock 70kDa protein 4-like##AB023421|HSPA4L|22824|heat shock 70kDa protein 4-like##EF197155|HSPA4L|22824|heat shock 70kDa protein 4-like##AK294439|MFSD8|256471|major facilitator superfamily domain containing 8##AK315596|MFSD8|256471|major facilitator superfamily domain containing 8##AK074564|MFSD8|256471|major facilitator superfamily domain containing 8##BC111400|C4orf29|80167|chromosome 4 open reading frame 29##NM_001039717|C4orf29|80167|chromosome 4 open reading frame 29##BC058898|C4orf29|80167|chromosome 4 open reading frame 29##BC034253|C4orf29|80167|chromosome 4 open reading frame 29##AK024759|C4orf29|80167|chromosome 4 open reading frame 29##BC058847|C4orf29|80167|chromosome 4 open reading frame 29##BC075793|C4orf29|80167|chromosome 4 open reading frame 29##BC128142|C4orf29|80167|chromosome 4 open reading frame 29##BC128143|C4orf29|80167|chromosome 4 open reading frame 29	1.02871	0.0	denovo_WM_7:36:0.381	denovo_WM_7:38:0.482
chr7	127100327	127100441	reg1008422.p1	5.026	+	TSC_hg19_v1_chr7_-_127032759 AF218032 NM_176814 AK309674 BC047641	-67626	-	TSC_hg19_v1_chr7_-_126893165 AK290197	-207232	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	-208019	-	AF525417 AK315472 BC078665 TSC_hg19_v1_chr7_-_127225651	125155	-	BC014100 NM_024523 TSC_hg19_v1_chr7_-_127225654	125288	-	NM_001662 TSC_hg19_v1_chr7_+_127228469 AK307297 AK308548 BC033104 M57567 AK297026 AK312107 BC003043 AB528679 AF493884 BT007087	128094	+	AF218032|ZNF800|168850|zinc finger protein 800##NM_176814|ZNF800|168850|zinc finger protein 800##AK309674|ZNF800|168850|zinc finger protein 800##BC047641|ZNF800|168850|zinc finger protein 800##AK290197|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AF525417|GCC1|79571|GRIP and coiled-coil domain containing 1##AK315472|GCC1|79571|GRIP and coiled-coil domain containing 1##BC078665|GCC1|79571|GRIP and coiled-coil domain containing 1##BC014100|GCC1|79571|GRIP and coiled-coil domain containing 1##NM_024523|GCC1|79571|GRIP and coiled-coil domain containing 1##NM_001662|ARF5|381|ADP-ribosylation factor 5##AK307297|ARF5|381|ADP-ribosylation factor 5##AK308548|ARF5|381|ADP-ribosylation factor 5##BC033104|ARF5|381|ADP-ribosylation factor 5##M57567|ARF5|381|ADP-ribosylation factor 5##AK297026|ARF5|381|ADP-ribosylation factor 5##AK312107|ARF5|381|ADP-ribosylation factor 5##BC003043|ARF5|381|ADP-ribosylation factor 5##AF493884|ARF5|381|ADP-ribosylation factor 5##BT007087|ARF5|381|ADP-ribosylation factor 5	0.998758	0.0	denovo_WM_7:-22:0.518	denovo_WM_7:-23:0.462
chr7	92361061	92361158	reg1009115.p2	5.026	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-141411	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-141467	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-203003	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	101658	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	102111	-	AK313491 TSC_hg19_v1_chr7_-_92465884	104789	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.993664	0.0	denovo_WM_7:-36:0.545
chr8	67297712	67297827	reg1006663.p1	5.026	+	BC002599 BC011031 AK075431 NM_000756	-207002	-	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	-258429	+	NM_033105 BC016742 AF368276 AL133660	-363950	+	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	43537	+	NM_144650 AY033237 AK056992 AK300881 BC047492 BC064634 AK293530 AK300243 AK294114 BC110290	46963	+	NM_152765	107721	+	BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_144650|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AY033237|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK056992|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300881|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC047492|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC064634|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK293530|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300243|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK294114|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC110290|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##NM_152765|C8orf46|254778|chromosome 8 open reading frame 46	0.999409	0.0	denovo_WM_7:26:0.848
chr1	2120840	2120982	reg1007964.p2	5.025	+	NM_001033582	-84757	+	NM_001242874 AK294782	-115444	+	AK294649 NM_001033581	-115827	+	TSC_hg19_v1_chr1_-_2126212 BC041041 AF469129 BC066360 AK055593 BC103992 NM_182533	5268	-	AK127994 NM_001146310	18260	-	NM_003036 X15218 TSC_hg19_v1_chr1_+_2160159	39258	+	NM_001033582|PRKCZ|5590|protein kinase C, zeta##NM_001242874|PRKCZ|5590|protein kinase C, zeta##AK294782|PRKCZ|5590|protein kinase C, zeta##AK294649|PRKCZ|5590|protein kinase C, zeta##NM_001033581|PRKCZ|5590|protein kinase C, zeta##BC041041|C1orf86|199990|chromosome 1 open reading frame 86##AF469129|C1orf86|199990|chromosome 1 open reading frame 86##BC066360|C1orf86|199990|chromosome 1 open reading frame 86##AK055593|C1orf86|199990|chromosome 1 open reading frame 86##BC103992|C1orf86|199990|chromosome 1 open reading frame 86##NM_182533|C1orf86|199990|chromosome 1 open reading frame 86##AK127994|C1orf86|199990|chromosome 1 open reading frame 86##NM_001146310|C1orf86|199990|chromosome 1 open reading frame 86##NM_003036|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##X15218|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)	0.0	0.0	
chr7	97761435	97761570	reg1007049.p1	5.025	+	TSC_hg19_v1_chr7_+_97736173 AB029002 BC146773 NM_014916 BC131504 AB384558 AB590084 AY130988	-25166	+	TSC_hg19_v1_chr7_-_97619350 AB528806 NM_006188	-142120	-	TSC_hg19_v1_chr7_-_97601657 BC030024	-159842	-	BC113394 BC113396 NM_177455 AB464465	80089	+	TSC_hg19_v1_chr7_-_97881512 AK292996 BC053591 NM_015395 AK057048	119997	-	NM_001159491 NM_015379 TSC_hg19_v1_chr7_+_97910997 AB055977 BC018737 AF041430 BC062370 BC071992	149497	+	AB029002|LMTK2|22853|lemur tyrosine kinase 2##BC146773|LMTK2|22853|lemur tyrosine kinase 2##NM_014916|LMTK2|22853|lemur tyrosine kinase 2##BC131504|LMTK2|22853|lemur tyrosine kinase 2##AY130988|LMTK2|22853|lemur tyrosine kinase 2##NM_006188|OCM2|4951|oncomodulin 2##BC113394|BHLHA15|168620|basic helix-loop-helix family, member a15##BC113396|BHLHA15|168620|basic helix-loop-helix family, member a15##NM_177455|BHLHA15|168620|basic helix-loop-helix family, member a15##AK292996|TECPR1|25851|tectonin beta-propeller repeat containing 1##BC053591|TECPR1|25851|tectonin beta-propeller repeat containing 1##NM_015395|TECPR1|25851|tectonin beta-propeller repeat containing 1##AK057048|TECPR1|25851|tectonin beta-propeller repeat containing 1##NM_001159491|BRI3|25798|brain protein I3##NM_015379|BRI3|25798|brain protein I3##AB055977|BRI3|25798|brain protein I3##BC018737|BRI3|25798|brain protein I3##AF041430|BRI3|25798|brain protein I3##BC062370|BRI3|25798|brain protein I3	0.815798	0.0	denovo_WM_7:72:0.791
chr8	126310881	126311020	reg1011191.p2	5.025	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-206853	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-206893	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-206928	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	131629	+	TSC_hg19_v1_chr8_-_126963395 BX648371	652463	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1259605	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.98784	0.0	denovo_WM_7:-2:0.869
chr9	35797678	35797799	reg1010066.p1	5.025	+	AJ005282 NM_003995	-5333	+	DQ012170 BC071800 BC105274 NM_001044264	-43466	-	TSC_hg19_v1_chr9_+_35749334 D87447 BC001725	-48402	+	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	14462	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	17274	-	TSC_hg19_v1_chr9_-_35815040 NM_032593	17317	-	AJ005282|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##NM_003995|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##DQ012170|MSMP|692094|microseminoprotein, prostate associated##BC071800|MSMP|692094|microseminoprotein, prostate associated##BC105274|MSMP|692094|microseminoprotein, prostate associated##NM_001044264|MSMP|692094|microseminoprotein, prostate associated##D87447|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##BC001725|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2##NM_032593|HINT2|84681|histidine triad nucleotide binding protein 2	0.687251	0.0	denovo_WM_7:-2:0.307	denovo_WM_7:-3:0.320
chr11	108067712	108067846	reg1014319.p1	5.024	+	TSC_hg19_v1_chr11_+_107992293 D90228 NM_000019 AK312574 BC010942 BC063853 AB590491	-75488	+	X81882 BC017838 TSC_hg19_v1_chr11_+_107880062 CU687672 AF017061 AF327710	-187750	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	-188152	+	U58852 AB527441 TSC_hg19_v1_chr11_-_108093291 BC136270 AK291687 X97186	25504	-	D83243 BC050561 TSC_hg19_v1_chr11_-_108093366 BC040356 BC094769 AK290020 NM_002519	25593	-	NM_000051	25779	+	D90228|ACAT1|38|acetyl-CoA acetyltransferase 1##NM_000019|ACAT1|38|acetyl-CoA acetyltransferase 1##AK312574|ACAT1|38|acetyl-CoA acetyltransferase 1##BC010942|ACAT1|38|acetyl-CoA acetyltransferase 1##BC063853|ACAT1|38|acetyl-CoA acetyltransferase 1##X81882|CUL5|8065|cullin 5##BC017838|CUL5|8065|cullin 5##AF017061|CUL5|8065|cullin 5##AF327710|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5##U58852|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC136270|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK291687|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##X97186|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##D83243|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC050561|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC040356|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC094769|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK290020|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_002519|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_000051|ATM|472|ataxia telangiectasia mutated	0.38994	0.0	denovo_WM_7:-28:0.236
chr13	92001557	92001711	reg1007341.p2	5.024	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-3676765	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-5628195	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-7545134	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	49270	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	1877793	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	3130192	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	0.964663	0.0	denovo_WM_7:8:0.481	denovo_WM_7:9:0.285
chr17	76156049	76156229	reg1011305.p2	5.024	+	AY358510 NM_001163075	-13706	+	BC023597 NM_007267 TSC_hg19_v1_chr17_-_76128499	-27639	-	TSC_hg19_v1_chr17_+_76126871 AK310623 NM_152468 AK303499 BC110296 AY099358 AY099359 BC028076 AK090478	-29273	+	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	8521	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	27040	-	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	27284	+	AY358510|C17orf99|100141515|chromosome 17 open reading frame 99##NM_001163075|C17orf99|100141515|chromosome 17 open reading frame 99##BC023597|TMC6|11322|transmembrane channel-like 6##NM_007267|TMC6|11322|transmembrane channel-like 6##AK310623|TMC8|147138|transmembrane channel-like 8##NM_152468|TMC8|147138|transmembrane channel-like 8##AK303499|TMC8|147138|transmembrane channel-like 8##BC110296|TMC8|147138|transmembrane channel-like 8##AY099358|TMC8|147138|transmembrane channel-like 8##AY099359|TMC8|147138|transmembrane channel-like 8##BC028076|TMC8|147138|transmembrane channel-like 8##AK090478|TMC8|147138|transmembrane channel-like 8##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase	0.806499	0.0	denovo_WM_7:100:0.262	denovo_WM_7:104:0.263
chr17	8761452	8761632	reg1004801.p2	5.024	+	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-58990	-	BC146949 BC146966 BC171861 NM_001128076	-99666	-	BC029224 AK057296 NM_001158261 NM_144681	-113414	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	9442	-	AY725853 AF128881 NM_014308	54274	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	107439	-	BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5	0.996444	0.0	
chr2	48544607	48544731	reg1009957.p1	5.024	+	TSC_hg19_v1_chr2_+_48541851 NM_002158 BC063305	-2851	+	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	-411876	-	AK304140 AK315108 NM_025133	-428818	-	AY134855 NM_001135629 NM_001193475 NM_152994 TSC_hg19_v1_chr2_+_48667936 AK172762 AK122900 AY092062 BC111059 AK307755 BC117279 BC143466 BC143463 BC040721	123303	+	AK309740 NM_001198593 TSC_hg19_v1_chr2_+_48757177	212452	+	TSC_hg19_v1_chr2_+_48757357 AK314464 NM_001198595 NM_006873 CR936807	212656	+	NM_002158|FOXN2|3344|forkhead box N2##BC063305|FOXN2|3344|forkhead box N2##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##AY134855|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001135629|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001193475|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_152994|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK172762|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK122900|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AY092062|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC111059|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK307755|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC117279|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143466|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143463|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC040721|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK309740|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##NM_001198593|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##AK314464|STON1|11037|stonin 1##NM_001198595|STON1|11037|stonin 1##NM_006873|STON1|11037|stonin 1##CR936807|STON1|11037|stonin 1	2.328718	0.0	denovo_WM_7:72:0.270	denovo_WM_7:73:0.727	denovo_WM_7:-75:0.337	denovo_WM_7:88:0.860
chr10	70716785	70716907	reg1008454.p1	5.023	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-914	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-55729	+	TSC_hg19_v1_chr10_+_70661066 BC000272 NM_024045 AK223297 AF334103 AK301431 AK293577 BC014263	-55822	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	31689	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	130990	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	131038	+	BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##BC000272|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_024045|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AK223297|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AF334103|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AK301431|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##AK293577|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##BC014263|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin	0.999349	0.0	denovo_WM_7:-40:0.872
chr1	109076586	109076742	reg1004760.p2	5.023	+	NM_001143987 NM_001143988 BC125161 BC125162	-83742	+	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	-289982	-	TSC_hg19_v1_chr1_+_108742987 AK130480	-333655	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	26378	+	BC088366 TSC_hg19_v1_chr1_-_109203698 NM_001102592 BC012198	127104	-	TSC_hg19_v1_chr1_-_109204071 AK311542 AK310152 AK055087 NM_144584	127427	-	NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B##BC088366|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_001102592|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##BC012198|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK311542|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK310152|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK055087|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_144584|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)	0.999671	0.0	
chr12	16759091	16759241	reg1005680.p2	5.023	+	AK316021 AK294474 NM_001243612	-295	-	NM_001243611 TSC_hg19_v1_chr12_-_16758338	-841	-	TSC_hg19_v1_chr12_-_16757958 AK294651 AB044745	-1154	-	AK312418 TSC_hg19_v1_chr12_-_16759422	256	-	BC026311 TSC_hg19_v1_chr12_-_16759432	265	-	TSC_hg19_v1_chr12_-_16759535 NM_018640	367	-	AK316021|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK294474|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001243612|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_001243611|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AB044745|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##AK312418|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##BC026311|LMO3|55885|LIM domain only 3 (rhombotin-like 2)##NM_018640|LMO3|55885|LIM domain only 3 (rhombotin-like 2)	1.039133	0.0	denovo_WM_7:-60:0.626	denovo_WM_7:-61:0.243
chr9	114707542	114707675	reg1008691.p2	5.023	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-48141	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-48494	+	AL833535 NM_173521	-161833	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	229912	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	387679	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	388241	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.0	0.0	
chr1	200846522	200846633	reg1007263.p1	5.022	+	BC126386 BC126388 AK315339 NM_005298	-4454	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-137906	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-207469	-	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	14069	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	17420	+	AM177180 AB527174 BC137281 BC144557 TSC_hg19_v1_chr1_-_200992598	145977	-	BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106##AM177180|KIF21B|23046|kinesin family member 21B##BC137281|KIF21B|23046|kinesin family member 21B##BC144557|KIF21B|23046|kinesin family member 21B	0.999408	0.043534	denovo_WM_7:0:0.739
chr1	54513105	54513285	reg1010899.p2	5.022	+	BC140760 BC144466 BC171743 NM_001010978 BC103740 BC127708 BC127709	-29367	-	TSC_hg19_v1_chr1_+_54412103 BC013101	-101070	+	TSC_hg19_v1_chr1_+_54412028 AK074521 AK075201 NM_052940 AK095767	-101152	+	CU678378 BC003106 TSC_hg19_v1_chr1_-_54518878 AF047439 AK075505 AX775909 BC016374 AK225624	5639	-	TSC_hg19_v1_chr1_-_54518888 BC095464	5699	-	TSC_hg19_v1_chr1_-_54518929 AY359029	5727	-	BC140760|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##BC144466|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##BC171743|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##NM_001010978|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##BC103740|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##BC127708|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##BC127709|LDLRAD1|388633|low density lipoprotein receptor class A domain containing 1##BC013101|LRRC42|115353|leucine rich repeat containing 42##AK074521|LRRC42|115353|leucine rich repeat containing 42##AK075201|LRRC42|115353|leucine rich repeat containing 42##NM_052940|LRRC42|115353|leucine rich repeat containing 42##AK095767|LRRC42|115353|leucine rich repeat containing 42##BC003106|TMEM59|9528|transmembrane protein 59##AF047439|TMEM59|9528|transmembrane protein 59##AK075505|TMEM59|9528|transmembrane protein 59##AX775909|TMEM59|9528|transmembrane protein 59##BC016374|TMEM59|9528|transmembrane protein 59##AK225624|TMEM59|9528|transmembrane protein 59##BC095464|TMEM59|9528|transmembrane protein 59##AY359029|TMEM59|9528|transmembrane protein 59	0.0	0.0	
chr17	39968216	39968313	reg1000521.p1	5.022	+	TSC_hg19_v1_chr17_-_39968202 DQ893598 EU831442 EU831534 CU674526 U47621 BC011701 AK222945 BC007942 AK301301 BC001047 AJ250583	-64	-	AY295765 TSC_hg19_v1_chr17_-_39967969	-321	-	TSC_hg19_v1_chr17_-_39942964 AK226051 M23410 Z68228 BC000441 AK293479 NM_002230 NM_021991	-25281	-	NM_006455	186	-	TSC_hg19_v1_chr17_-_39968872 AK056085	601	-	AK092708 AX747682 NM_021939	697	+	DQ893598|LEPREL4|10609|leprecan-like 4##EU831442|LEPREL4|10609|leprecan-like 4##EU831534|LEPREL4|10609|leprecan-like 4##U47621|LEPREL4|10609|leprecan-like 4##BC011701|LEPREL4|10609|leprecan-like 4##AK222945|LEPREL4|10609|leprecan-like 4##BC007942|LEPREL4|10609|leprecan-like 4##AK301301|LEPREL4|10609|leprecan-like 4##BC001047|LEPREL4|10609|leprecan-like 4##AJ250583|LEPREL4|10609|leprecan-like 4##AK226051|JUP|3728|junction plakoglobin##M23410|JUP|3728|junction plakoglobin##Z68228|JUP|3728|junction plakoglobin##BC000441|JUP|3728|junction plakoglobin##NM_002230|JUP|3728|junction plakoglobin##NM_021991|JUP|3728|junction plakoglobin##NM_006455|LEPREL4|10609|leprecan-like 4##AK056085|LEPREL4|10609|leprecan-like 4##AK092708|FKBP10|60681|FK506 binding protein 10, 65 kDa##NM_021939|FKBP10|60681|FK506 binding protein 10, 65 kDa	0.0	0.0	
chr5	78525494	78525643	reg1010939.p1	5.022	+	NM_001713 AK298308 AK303780 AK315224 BC012616 U50929 AB590690	-117913	+	AF257473 TSC_hg19_v1_chr5_+_78365591 AK298298 AK315520 BC020665 DQ891370 DQ894550 AB590411 CU676622	-159975	+	NM_001178005 NM_017614 TSC_hg19_v1_chr5_+_78365558	-160014	+	TSC_hg19_v1_chr5_+_78531933 NM_152405	6323	+	TSC_hg19_v1_chr5_+_78532339 AB590691	6836	+	BC047438 NM_004272	284110	-	NM_001713|BHMT|635|betaine--homocysteine S-methyltransferase##AK298308|BHMT|635|betaine--homocysteine S-methyltransferase##AK303780|BHMT|635|betaine--homocysteine S-methyltransferase##AK315224|BHMT|635|betaine--homocysteine S-methyltransferase##BC012616|BHMT|635|betaine--homocysteine S-methyltransferase##U50929|BHMT|635|betaine--homocysteine S-methyltransferase##AF257473|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##AK298298|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##AK315520|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##BC020665|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##DQ891370|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##DQ894550|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##NM_001178005|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##NM_017614|BHMT2|23743|betaine--homocysteine S-methyltransferase 2##NM_152405|JMY|133746|junction mediating and regulatory protein, p53 cofactor##BC047438|HOMER1|9456|homer homolog 1 (Drosophila)##NM_004272|HOMER1|9456|homer homolog 1 (Drosophila)	0.0	0.0	
chr6	91135100	91135280	reg1011679.p2	5.022	+	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-128578	-	AJ271878 TSC_hg19_v1_chr6_-_91006556 NM_021813	-128679	-	AB527151 AF296766 NM_032602	-531004	+	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	161493	-	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	161648	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	2993993	-	AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AJ271878|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_021813|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7	0.989118	0.0	denovo_WM_7:23:0.918
chr8	121821958	121822125	reg1005033.p2	5.022	+	TSC_hg19_v1_chr8_+_121457658 AK022122 AK300762 BC013136 NM_022045 EU176294 EU176618	-364365	+	BC021744 NM_014078	-364406	-	TSC_hg19_v1_chr8_-_121457391 AK311924	-364648	-	TSC_hg19_v1_chr8_+_121823539 AK302130	1500	+	TSC_hg19_v1_chr8_-_121823718 AF028828	1720	-	TSC_hg19_v1_chr8_-_121824090 AB590740	2022	-	AK022122|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##AK300762|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC013136|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##NM_022045|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176294|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176618|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##AF028828|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	0.0	0.0	
chr8	8475360	8475540	reg1005839.p1	5.022	+	AK122582 NM_001080826	-236228	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-299562	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-389308	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	84248	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	275488	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	384915	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.998308	0.0	
chr10	15074638	15074749	reg1009134.p2	5.021	+	NM_001080836	-73256	+	CU692508 TSC_hg19_v1_chr10_-_14996096 BC108276 AK022922 BC022254 AF395747 AF395748 AF395749 AF395750 AF395751 AF395752 AJ296101 BC009185 BX648858 AK021422 AK290598 AK307912 NM_001033855 NM_001033857 NM_001033858 NM_022487	-78639	-	NM_001193424 NM_001193426 BC029360 TSC_hg19_v1_chr10_+_14920864 NM_001193425 NM_001193427 AK222565 AK225369 AK027067 CU688630 BC007754 NM_024670	-153854	+	NM_001039702 NM_018324 BC050372 AK001844 AK001968	11234	+	BC029526 AK095538 AK295169 NM_001039844 TSC_hg19_v1_chr10_-_15130776	56081	-	NM_001097590 NM_006414 NM_183005 TSC_hg19_v1_chr10_+_15139195 AK223418	64499	+	NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##BC108276|DCLRE1C|64421|DNA cross-link repair 1C##AK022922|DCLRE1C|64421|DNA cross-link repair 1C##BC022254|DCLRE1C|64421|DNA cross-link repair 1C##AF395747|DCLRE1C|64421|DNA cross-link repair 1C##AF395748|DCLRE1C|64421|DNA cross-link repair 1C##AF395749|DCLRE1C|64421|DNA cross-link repair 1C##AF395750|DCLRE1C|64421|DNA cross-link repair 1C##AF395751|DCLRE1C|64421|DNA cross-link repair 1C##AF395752|DCLRE1C|64421|DNA cross-link repair 1C##AJ296101|DCLRE1C|64421|DNA cross-link repair 1C##BC009185|DCLRE1C|64421|DNA cross-link repair 1C##BX648858|DCLRE1C|64421|DNA cross-link repair 1C##AK021422|DCLRE1C|64421|DNA cross-link repair 1C##AK290598|DCLRE1C|64421|DNA cross-link repair 1C##AK307912|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033855|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033857|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033858|DCLRE1C|64421|DNA cross-link repair 1C##NM_022487|DCLRE1C|64421|DNA cross-link repair 1C##NM_001193424|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193426|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC029360|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193425|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193427|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK222565|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK225369|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK027067|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC007754|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_024670|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase##BC029526|ACBD7|414149|acyl-CoA binding domain containing 7##AK095538|ACBD7|414149|acyl-CoA binding domain containing 7##AK295169|ACBD7|414149|acyl-CoA binding domain containing 7##NM_001039844|ACBD7|414149|acyl-CoA binding domain containing 7##NM_001097590|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_006414|RPP38|10557|ribonuclease P/MRP 38kDa subunit##NM_183005|RPP38|10557|ribonuclease P/MRP 38kDa subunit##AK223418|RPP38|10557|ribonuclease P/MRP 38kDa subunit	0.991465	0.0	
chr14	103273942	103274122	reg1010182.p1	5.021	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-30132	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-30213	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-214871	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	114966	+	TSC_hg19_v1_chr14_-_103430941 BX248752	156926	-	AB384568 TSC_hg19_v1_chr14_-_103523568	249509	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	0.0	0.0	
chr16	54991386	54991494	reg1011519.p2	5.021	+	AY335945 BC131510 NM_001252197 NM_005853	-26330	+	AF275804 TSC_hg19_v1_chr16_-_54962719	-28725	-	TSC_hg19_v1_chr16_-_54320368 AY335943 NM_024336	-671047	-	AY335937 NM_024335	367030	+	TSC_hg19_v1_chr16_+_55513109 NM_004530 X58968 AK312711 BC002576 DQ891952 DQ895138 AB385158 CU678050 J03210	521680	+	AK310314 NM_001127891	524030	+	AY335945|IRX5|10265|iroquois homeobox 5##BC131510|IRX5|10265|iroquois homeobox 5##NM_001252197|IRX5|10265|iroquois homeobox 5##NM_005853|IRX5|10265|iroquois homeobox 5##AF275804|CRNDE|643911|colorectal neoplasia differentially expressed (non-protein coding)##AY335943|IRX3|79191|iroquois homeobox 3##NM_024336|IRX3|79191|iroquois homeobox 3##AY335937|IRX6|79190|iroquois homeobox 6##NM_024335|IRX6|79190|iroquois homeobox 6##NM_004530|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##X58968|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK312711|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##BC002576|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ891952|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ895138|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##J03210|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK310314|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##NM_001127891|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	2.896366	0.952259	CTCF.p2:1:0.952	denovo_WM_7:-68:0.834	denovo_WM_7:-85:0.309	denovo_WM_7:-87:0.372	denovo_WM_7:-101:0.289	denovo_WM_7:-102:0.661
chr17	76774243	76774423	reg1002902.p2	5.021	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-41335	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-54582	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-54686	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	4020	-	BC071582 TSC_hg19_v1_chr17_-_76836610	62317	-	TSC_hg19_v1_chr17_-_76836843 AK225426	62450	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	0.998956	0.0	
chr19	11562160	11562340	reg1008097.p1	5.021	+	AB385574 AF144075 TSC_hg19_v1_chr19_+_11546995 BC013586	-15281	+	TSC_hg19_v1_chr19_+_11546486 AK290433	-15708	+	J03075 TSC_hg19_v1_chr19_+_11546469 Z36798 AK225390	-15782	+	BC080533 BC011875 TSC_hg19_v1_chr19_-_11564576	2322	-	TSC_hg19_v1_chr19_-_11565617 BC068222	3378	-	AY036909 L26405 D26158 BC014144 NM_001420 NM_032281 TSC_hg19_v1_chr19_-_11591862	29403	-	AF144075|PRKCSH|5589|protein kinase C substrate 80K-H##BC013586|PRKCSH|5589|protein kinase C substrate 80K-H##AK290433|PRKCSH|5589|protein kinase C substrate 80K-H##J03075|PRKCSH|5589|protein kinase C substrate 80K-H##Z36798|PRKCSH|5589|protein kinase C substrate 80K-H##AK225390|PRKCSH|5589|protein kinase C substrate 80K-H##BC080533|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC011875|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##AY036909|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##L26405|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##D26158|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC014144|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_001420|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_032281|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	2.004955	0.0	denovo_WM_7:36:0.496	denovo_WM_7:37:0.496
chr5	75133852	75134032	reg1004683.p2	5.021	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-120682	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	-125680	-	NM_001130105	-326137	-	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	245329	+	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	565174	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	785203	-	BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001130105|COL4A3BP|10087|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2	0.979269	0.0	denovo_WM_7:34:0.523	denovo_WM_7:35:0.203
chr10	74855484	74855609	reg1000514.p3	5.020	+	AK311349 TSC_hg19_v1_chr10_-_74714574	-140974	-	AF349540 BC093996 BC111946 BC143532 AY358032 NM_032562 AF339053 AK313712 TSC_hg19_v1_chr10_-_74714543	-141035	-	AK096435 NM_152635 BC126440 AY358339 AY013707 TSC_hg19_v1_chr10_+_74653529	-202113	+	TSC_hg19_v1_chr10_-_74856621 M24486 M24487 AK312593 AK222960 BC034998	1059	-	TSC_hg19_v1_chr10_-_74856725 NM_000917 NM_001017962 NM_001142595 NM_001142596	1224	-	NM_015901 BC031224 AK303235 TSC_hg19_v1_chr10_+_74870272 AK300980 AK309755 AK316538 BC046173 BC038833	14705	+	AK311349|PLA2G12B|84647|phospholipase A2, group XIIB##AF349540|PLA2G12B|84647|phospholipase A2, group XIIB##BC093996|PLA2G12B|84647|phospholipase A2, group XIIB##BC111946|PLA2G12B|84647|phospholipase A2, group XIIB##BC143532|PLA2G12B|84647|phospholipase A2, group XIIB##AY358032|PLA2G12B|84647|phospholipase A2, group XIIB##NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB##AF339053|PLA2G12B|84647|phospholipase A2, group XIIB##AK313712|PLA2G12B|84647|phospholipase A2, group XIIB##AK096435|OIT3|170392|oncoprotein induced transcript 3##NM_152635|OIT3|170392|oncoprotein induced transcript 3##BC126440|OIT3|170392|oncoprotein induced transcript 3##AY358339|OIT3|170392|oncoprotein induced transcript 3##AY013707|OIT3|170392|oncoprotein induced transcript 3##M24486|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##M24487|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK312593|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##AK222960|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##BC034998|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_000917|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001017962|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142595|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_001142596|P4HA1|5033|prolyl 4-hydroxylase, alpha polypeptide I##NM_015901|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC031224|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK303235|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK300980|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK309755|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##AK316538|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC046173|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13##BC038833|NUDT13|25961|nudix (nucleoside diphosphate linked moiety X)-type motif 13	0.0	0.0	
chr15	83874904	83875057	reg1010872.p2	5.020	+	BC063487 NM_001144903 NM_023003 AF255922 TSC_hg19_v1_chr15_+_83776396 AK223246 AK292100 BC032007 CU687748 DQ021909 AK295568	-98602	+	NM_001011885 NM_025238 TSC_hg19_v1_chr15_-_83736124	-138865	-	TSC_hg19_v1_chr15_-_83736005 BC028097	-138976	-	AB529208 TSC_hg19_v1_chr15_-_83876576 BC015483 AB029156 AF110642 AF151900 AK001280 NM_016073	1434	-	BC040554 TSC_hg19_v1_chr15_-_83876823	1816	-	TSC_hg19_v1_chr15_-_83952207 AK302992	77222	-	BC063487|TM6SF1|53346|transmembrane 6 superfamily member 1##NM_001144903|TM6SF1|53346|transmembrane 6 superfamily member 1##NM_023003|TM6SF1|53346|transmembrane 6 superfamily member 1##AF255922|TM6SF1|53346|transmembrane 6 superfamily member 1##AK223246|TM6SF1|53346|transmembrane 6 superfamily member 1##AK292100|TM6SF1|53346|transmembrane 6 superfamily member 1##BC032007|TM6SF1|53346|transmembrane 6 superfamily member 1##DQ021909|TM6SF1|53346|transmembrane 6 superfamily member 1##AK295568|TM6SF1|53346|transmembrane 6 superfamily member 1##NM_001011885|BTBD1|53339|BTB (POZ) domain containing 1##NM_025238|BTBD1|53339|BTB (POZ) domain containing 1##BC028097|BTBD1|53339|BTB (POZ) domain containing 1##BC015483|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AB029156|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AF110642|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AF151900|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AK001280|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##NM_016073|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##BC040554|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AK302992|BNC1|646|basonuclin 1	0.238162	0.0	
chr8	17859383	17859482	reg1007655.p1	5.020	+	TSC_hg19_v1_chr8_+_17829865 AK091406 AX746961 AK302378	-29463	+	TSC_hg19_v1_chr8_+_17822094 AF068293	-37322	+	TSC_hg19_v1_chr8_+_17780529 BC065022 BC027477 BC140946	-78909	+	AB528408 CU677637 DQ891071 DQ894254 U70063 TSC_hg19_v1_chr8_-_17941584 U47674	82144	-	TSC_hg19_v1_chr8_-_17941601 BC016481 AK098299	82172	-	AK222780 TSC_hg19_v1_chr8_-_17941615	82183	-	AK091406|PCM1|5108|pericentriolar material 1##AK302378|PCM1|5108|pericentriolar material 1##AF068293|PCM1|5108|pericentriolar material 1##BC065022|PCM1|5108|pericentriolar material 1##BC027477|PCM1|5108|pericentriolar material 1##BC140946|PCM1|5108|pericentriolar material 1##DQ891071|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##DQ894254|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U70063|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U47674|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##BC016481|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##AK098299|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##AK222780|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1	2.802705	0.0	denovo_WM_7:74:0.904	denovo_WM_7:89:0.900	denovo_WM_7:104:0.911
chr9	100175388	100175531	reg1010841.p2	5.020	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	-1080	+	TSC_hg19_v1_chr9_+_100174364 NM_014290 BC028694	-1186	+	NM_020893 CR749320	-105521	+	NM_001166116 AK314533	88003	+	TSC_hg19_v1_chr9_+_100263947 BC002660 NM_003275	88479	+	TSC_hg19_v1_chr9_-_100395642 AK094043 AK291199 AX748426 BC035604 BX648493 BX538308 AK128615	220170	-	AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7##NM_014290|TDRD7|23424|tudor domain containing 7##BC028694|TDRD7|23424|tudor domain containing 7##NM_020893|C9orf174|100499483|chromosome 9 open reading frame 174##CR749320|C9orf174|100499483|chromosome 9 open reading frame 174##NM_001166116|TMOD1|7111|tropomodulin 1##AK314533|TMOD1|7111|tropomodulin 1##BC002660|TMOD1|7111|tropomodulin 1##NM_003275|TMOD1|7111|tropomodulin 1##AK094043|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK291199|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BC035604|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX648493|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX538308|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK128615|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	0.0	0.0	
chr6	111195538	111195718	reg1008536.p1	5.019	+	TSC_hg19_v1_chr6_-_111136673 BC024247	-58902	-	TSC_hg19_v1_chr6_-_111136507 AY028424	-59114	-	TSC_hg19_v1_chr6_-_111136424 BC037289 NM_015076 AK292360	-59210	-	AK302761 NM_001634 TSC_hg19_v1_chr6_+_111195987 AK300330 AL832698 BX640599 NM_001033059 AJ420527 M21154	394	+	AF361492 AF361496 NM_138408 BC104655 TSC_hg19_v1_chr6_+_111279890	84202	+	BC011593 TSC_hg19_v1_chr6_+_111279945 AK057977 EF137904	84330	+	BC024247|CDK19|23097|cyclin-dependent kinase 19##AY028424|CDK19|23097|cyclin-dependent kinase 19##BC037289|CDK19|23097|cyclin-dependent kinase 19##NM_015076|CDK19|23097|cyclin-dependent kinase 19##AK292360|CDK19|23097|cyclin-dependent kinase 19##AK302761|AMD1|262|adenosylmethionine decarboxylase 1##NM_001634|AMD1|262|adenosylmethionine decarboxylase 1##AK300330|AMD1|262|adenosylmethionine decarboxylase 1##AL832698|AMD1|262|adenosylmethionine decarboxylase 1##BX640599|AMD1|262|adenosylmethionine decarboxylase 1##NM_001033059|AMD1|262|adenosylmethionine decarboxylase 1##AJ420527|AMD1|262|adenosylmethionine decarboxylase 1##M21154|AMD1|262|adenosylmethionine decarboxylase 1##AF361492|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AF361496|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##NM_138408|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC104655|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##BC011593|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##AK057977|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa##EF137904|GTF3C6|112495|general transcription factor IIIC, polypeptide 6, alpha 35kDa	0.290536	0.0	denovo_WM_7:39:0.224
chr9	139592569	139592726	reg1007689.p1	5.018	+	TSC_hg19_v1_chr9_-_139581926 NM_001012727 NM_006412	-10732	-	AF011374 TSC_hg19_v1_chr9_-_139581883 AF000237	-10770	-	TSC_hg19_v1_chr9_-_139581856 BC004529 BC019292 U56418 BC000026	-10808	-	TSC_hg19_v1_chr9_+_139607008 NM_152421 BC032097 CU689268	14369	+	BC061888 TSC_hg19_v1_chr9_-_139622638 BC055011 BC059956 AK054908 AK090585 BC042369 BC042667	29976	-	AY301271 BC133045 BC144440 BC144441 BC171741 NM_001001712	44735	-	NM_001012727|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##NM_006412|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##AF011374|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##AF000237|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC004529|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC019292|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##U56418|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC000026|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##NM_152421|FAM69B|138311|family with sequence similarity 69, member B##BC032097|FAM69B|138311|family with sequence similarity 69, member B##BC061888|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC055011|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC059956|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##AK054908|SNORA43|677824|small nucleolar RNA, H/ACA box 43##AK090585|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC042369|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC042667|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##AY301271|LCN10|414332|lipocalin 10##BC133045|LCN10|414332|lipocalin 10##BC144440|LCN10|414332|lipocalin 10##BC144441|LCN10|414332|lipocalin 10##BC171741|LCN10|414332|lipocalin 10##NM_001001712|LCN10|414332|lipocalin 10	0.99834	0.0	denovo_WM_7:83:0.457	denovo_WM_7:84:0.457
chr10	112155618	112155720	reg1008836.p2	5.017	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-90969	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-91076	-	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-169848	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	102082	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	171823	+	AF067163 TSC_hg19_v1_chr10_+_112344155	188446	+	BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3	0.877492	0.0	denovo_WM_7:-33:0.821
chr1	117221832	117221998	reg1010328.p2	5.017	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-11532	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	-108238	-	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	-108300	-	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	75192	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	230727	+	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	322490	+	NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule	0.836114	0.0	denovo_WM_7:0:0.836
chr2	230296214	230296320	reg1011918.p1	5.017	+	AB075874 AK125359 TSC_hg19_v1_chr2_-_230135980 BC040164 AK096636 NM_001100818 NM_017933	-160262	-	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	-1249905	-	AK097409 NM_178821 BC036377 AK098821 AK301861	-1559915	+	AF442487 TSC_hg19_v1_chr2_-_230579208 AK289553 AY358891 BC035009 NM_139072	282981	-	BC113891 BC114556 TSC_hg19_v1_chr2_-_230786683 D28476 NM_004238 BC037956 AK302468	490394	-	TSC_hg19_v1_chr2_-_230786712 AK310971	490482	-	AB075874|PID1|55022|phosphotyrosine interaction domain containing 1##AK125359|PID1|55022|phosphotyrosine interaction domain containing 1##BC040164|PID1|55022|phosphotyrosine interaction domain containing 1##AK096636|PID1|55022|phosphotyrosine interaction domain containing 1##NM_001100818|PID1|55022|phosphotyrosine interaction domain containing 1##NM_017933|PID1|55022|phosphotyrosine interaction domain containing 1##HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##AF442487|DNER|92737|delta/notch-like EGF repeat containing##AK289553|DNER|92737|delta/notch-like EGF repeat containing##AY358891|DNER|92737|delta/notch-like EGF repeat containing##BC035009|DNER|92737|delta/notch-like EGF repeat containing##NM_139072|DNER|92737|delta/notch-like EGF repeat containing##BC113891|TRIP12|9320|thyroid hormone receptor interactor 12##BC114556|TRIP12|9320|thyroid hormone receptor interactor 12##D28476|TRIP12|9320|thyroid hormone receptor interactor 12##NM_004238|TRIP12|9320|thyroid hormone receptor interactor 12##BC037956|TRIP12|9320|thyroid hormone receptor interactor 12##AK302468|TRIP12|9320|thyroid hormone receptor interactor 12##AK310971|TRIP12|9320|thyroid hormone receptor interactor 12	0.977669	0.687869	CTCF.p2:-5:0.688	denovo_WM_7:38:0.289	denovo_WM_7:39:0.487
chr2	70334897	70335023	reg1001235.p1	5.017	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-19962	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-20043	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-20133	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	83161	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	140759	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	150290	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	1.013342	0.0	denovo_WM_7:-13:0.544	denovo_WM_7:-16:0.390
chr3	105556866	105557020	reg1009004.p3	5.017	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-135889	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-471121	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-471363	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	30864	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1402536	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1402649	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	1.8294	0.0	denovo_WM_7:-7:0.753	denovo_WM_7:-26:0.460
chr18	43407736	43407860	reg1010079.p1	5.016	+	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-2174	+	NM_001146037	-100881	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	-103641	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	139480	-	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	244410	-	TSC_hg19_v1_chr18_-_43668143 AK129804	260379	-	AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.30034	0.0	denovo_WM_7:-27:0.289
chr19	13053744	13053864	reg1011336.p2	5.016	+	AF087986 TSC_hg19_v1_chr19_+_13050366	-3486	+	AY047586 TSC_hg19_v1_chr19_+_13049447 BC002500 AB385014 AB451408 BT007448 CR457070 AK223060	-4322	+	TSC_hg19_v1_chr19_+_13049428 BC007911 BC020493	-4375	+	TSC_hg19_v1_chr19_+_13056655 NM_005053	2827	+	TSC_hg19_v1_chr19_+_13056662 AK293219	2858	+	TSC_hg19_v1_chr19_+_13056675 AK289908 BC088364 BC014026 AB209713 D21235 AB463210 L37720	2927	+	AF087986|CALR|811|calreticulin##AY047586|CALR|811|calreticulin##BC002500|CALR|811|calreticulin##AB451408|CALR|811|calreticulin##BT007448|CALR|811|calreticulin##CR457070|CALR|811|calreticulin##AK223060|CALR|811|calreticulin##BC007911|CALR|811|calreticulin##BC020493|CALR|811|calreticulin##NM_005053|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AK293219|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AK289908|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC088364|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC014026|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AB209713|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##D21235|RAD23A|5886|RAD23 homolog A (S. cerevisiae)	0.996227	0.0	
chr5	141702551	141702724	reg1010157.p2	5.016	+	TSC_hg19_v1_chr5_+_141488389 AB097010 AB097037 BC004317	-214227	+	AK075524 TSC_hg19_v1_chr5_+_141488384	-214253	+	TSC_hg19_v1_chr5_+_141488343 NM_030571 AK315481 AY192728	-214289	+	BC125095 BC125096 TSC_hg19_v1_chr5_-_141704555 AF227516 AF227517	1883	-	TSC_hg19_v1_chr5_-_141704587 AK096464 NM_001127496 NM_030964	1997	-	S67291 S67292 S67294 AB528663 X65778 X65779 M13361 NM_033137 X51943	291071	-	AB097010|NDFIP1|80762|Nedd4 family interacting protein 1##AB097037|NDFIP1|80762|Nedd4 family interacting protein 1##BC004317|NDFIP1|80762|Nedd4 family interacting protein 1##AK075524|NDFIP1|80762|Nedd4 family interacting protein 1##NM_030571|NDFIP1|80762|Nedd4 family interacting protein 1##AK315481|NDFIP1|80762|Nedd4 family interacting protein 1##AY192728|NDFIP1|80762|Nedd4 family interacting protein 1##BC125095|SPRY4|81848|sprouty homolog 4 (Drosophila)##BC125096|SPRY4|81848|sprouty homolog 4 (Drosophila)##AF227516|SPRY4|81848|sprouty homolog 4 (Drosophila)##AK096464|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_001127496|SPRY4|81848|sprouty homolog 4 (Drosophila)##NM_030964|SPRY4|81848|sprouty homolog 4 (Drosophila)##S67291|FGF1|2246|fibroblast growth factor 1 (acidic)##S67292|FGF1|2246|fibroblast growth factor 1 (acidic)##S67294|FGF1|2246|fibroblast growth factor 1 (acidic)##X65778|FGF1|2246|fibroblast growth factor 1 (acidic)##X65779|FGF1|2246|fibroblast growth factor 1 (acidic)##M13361|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_033137|FGF1|2246|fibroblast growth factor 1 (acidic)##X51943|FGF1|2246|fibroblast growth factor 1 (acidic)	0.99801	0.0	denovo_WM_7:-21:0.298	denovo_WM_7:-22:0.298	denovo_WM_7:-23:0.298
chr13	77919918	77920098	reg1008289.p2	5.015	+	NM_015057 TSC_hg19_v1_chr13_-_77901230	-18805	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	-318677	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	-318726	-	NM_001160706 NM_003843 NM_144777 BC020726 AF045941 AK025320 AK222720 AK301659	189843	+	TSC_hg19_v1_chr13_+_78271822 NM_001242868	351896	+	AK294201 NM_001040153	353007	+	NM_015057|MYCBP2|23077|MYC binding protein 2##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_001160706|SCEL|8796|sciellin##NM_003843|SCEL|8796|sciellin##NM_144777|SCEL|8796|sciellin##BC020726|SCEL|8796|sciellin##AF045941|SCEL|8796|sciellin##AK025320|SCEL|8796|sciellin##AK222720|SCEL|8796|sciellin##AK301659|SCEL|8796|sciellin##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1##AK294201|SLAIN1|122060|SLAIN motif family, member 1##NM_001040153|SLAIN1|122060|SLAIN motif family, member 1	1.104675	0.0	
chr16	55236963	55237097	reg1004687.p1	5.015	+	AY335945 BC131510 NM_001252197 NM_005853	-271920	+	AF275804 TSC_hg19_v1_chr16_-_54962719	-274315	-	TSC_hg19_v1_chr16_-_54320368 AY335943 NM_024336	-916637	-	AY335937 NM_024335	121440	+	TSC_hg19_v1_chr16_+_55513109 NM_004530 X58968 AK312711 BC002576 DQ891952 DQ895138 AB385158 CU678050 J03210	276090	+	AK310314 NM_001127891	278440	+	AY335945|IRX5|10265|iroquois homeobox 5##BC131510|IRX5|10265|iroquois homeobox 5##NM_001252197|IRX5|10265|iroquois homeobox 5##NM_005853|IRX5|10265|iroquois homeobox 5##AF275804|CRNDE|643911|colorectal neoplasia differentially expressed (non-protein coding)##AY335943|IRX3|79191|iroquois homeobox 3##NM_024336|IRX3|79191|iroquois homeobox 3##AY335937|IRX6|79190|iroquois homeobox 6##NM_024335|IRX6|79190|iroquois homeobox 6##NM_004530|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##X58968|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK312711|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##BC002576|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ891952|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##DQ895138|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##J03210|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##AK310314|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)##NM_001127891|MMP2|4313|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)	0.992656	0.0	denovo_WM_7:75:0.248	denovo_WM_7:76:0.248	denovo_WM_7:77:0.248	denovo_WM_7:78:0.248
chr12	118643392	118643514	reg1001027.p2	5.014	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-69475	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-69530	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-69578	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	167175	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	167277	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	170949	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.0	0.0	
chr1	236167278	236167458	reg1009512.p1	5.014	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-137124	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-137185	-	BC022485 NM_001098721 NM_004485	-353315	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	61009	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	61057	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	61110	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	1.756175	0.0	denovo_WM_7:-3:0.407	denovo_WM_7:-6:0.234	denovo_WM_7:-25:0.328	denovo_WM_7:-26:0.328	denovo_WM_7:-27:0.328
chr2	232532072	232532252	reg1006451.p1	5.014	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-74545	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-137008	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-153080	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	41072	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	41170	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	113763	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	1.547037	0.0	denovo_WM_7:7:0.987	denovo_WM_7:28:0.431
chr7	87563854	87564031	reg1011838.p2	5.014	+	TSC_hg19_v1_chr7_+_87563605 BC036029 BC092465 NM_004194 NM_016351 NM_021721 NM_021722 NM_021723 AK291010 BC062433 BC125118 BC125117 AF073291 AF155381 AF155382	-359	+	AK302010 TSC_hg19_v1_chr7_+_87505937 BC022811 CU690272	-57962	+	BC036045 TSC_hg19_v1_chr7_+_87505839 AK292569 AF160249 BC014909 AF160876 BC035632 AK303175 BC047693	-58138	+	AB464235 L12387 TSC_hg19_v1_chr7_-_87849352 AK295225 BC011025 M32886	285410	-	TSC_hg19_v1_chr7_-_87849391 AK129770 AK310366 NM_003130	285463	-	TSC_hg19_v1_chr7_-_87856292 AK296601 NM_198901	292352	-	BC036029|ADAM22|53616|ADAM metallopeptidase domain 22##BC092465|ADAM22|53616|ADAM metallopeptidase domain 22##NM_004194|ADAM22|53616|ADAM metallopeptidase domain 22##NM_016351|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021721|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021722|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021723|ADAM22|53616|ADAM metallopeptidase domain 22##AK291010|ADAM22|53616|ADAM metallopeptidase domain 22##BC062433|ADAM22|53616|ADAM metallopeptidase domain 22##BC125118|ADAM22|53616|ADAM metallopeptidase domain 22##BC125117|ADAM22|53616|ADAM metallopeptidase domain 22##AF073291|ADAM22|53616|ADAM metallopeptidase domain 22##AF155381|ADAM22|53616|ADAM metallopeptidase domain 22##AF155382|ADAM22|53616|ADAM metallopeptidase domain 22##AK302010|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC022811|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC036045|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK292569|DBF4|10926|DBF4 homolog (S. cerevisiae)##AF160249|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC014909|DBF4|10926|DBF4 homolog (S. cerevisiae)##AF160876|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC035632|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK303175|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC047693|DBF4|10926|DBF4 homolog (S. cerevisiae)##L12387|SRI|6717|sorcin##AK295225|SRI|6717|sorcin##BC011025|SRI|6717|sorcin##M32886|SRI|6717|sorcin##AK129770|SRI|6717|sorcin##AK310366|SRI|6717|sorcin##NM_003130|SRI|6717|sorcin##AK296601|SRI|6717|sorcin##NM_198901|SRI|6717|sorcin	0.996364	0.0	
chr18	60039591	60039703	reg1010325.p1	5.013	+	AB209762 AF018253 NM_003839 AB527346	-47097	+	TSC_hg19_v1_chr18_+_59855176 AB384606	-184437	+	TSC_hg19_v1_chr18_+_59854540 BX648481	-185059	+	NM_017742 TSC_hg19_v1_chr18_+_60190696 BC006340	151107	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	343017	+	TSC_hg19_v1_chr18_+_60383911 AB011178	344279	+	AB209762|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##AF018253|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_003839|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##BX648481|KIAA1468|57614|KIAA1468##NM_017742|ZCCHC2|54877|zinc finger, CCHC domain containing 2##BC006340|ZCCHC2|54877|zinc finger, CCHC domain containing 2##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1	0.993413	0.0	denovo_WM_7:68:0.518	denovo_WM_7:69:0.445
chr10	97581672	97581786	reg1010414.p2	5.012	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-66189	+	AJ133133 AJ133134 NM_001098175	-110194	+	BC068449 DQ278872 NM_001143973 NM_015631	-127830	-	AK294399 NM_001130446	85992	+	NM_001001732 NM_001159747 AK302377 BC075861	178135	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	221652	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.998836	0.0	
chr1	29508967	29509097	reg1009782.p1	5.012	+	NM_005626 TSC_hg19_v1_chr1_-_29508638	-393	-	TSC_hg19_v1_chr1_-_29508396 AK310528 AK293706 AK223444	-634	-	AK291509 BC002781 TSC_hg19_v1_chr1_-_29508360	-666	-	TSC_hg19_v1_chr1_-_29557417 AK226084 CR456703 AB528613	48348	-	TSC_hg19_v1_chr1_-_29557437 AK300889 AK025830 AK095099 AK225687 BC001419 AF151821 NM_001024732 NM_016011 AK315274	48415	-	TSC_hg19_v1_chr1_+_29563016 NM_001195001 NM_005704 NM_133177 NM_133178 X97198 U73727 BC146655 X95712 U71075	54016	+	NM_005626|SRSF4|6429|serine/arginine-rich splicing factor 4##AK310528|SRSF4|6429|serine/arginine-rich splicing factor 4##AK293706|SRSF4|6429|serine/arginine-rich splicing factor 4##AK223444|SRSF4|6429|serine/arginine-rich splicing factor 4##AK291509|SRSF4|6429|serine/arginine-rich splicing factor 4##BC002781|SRSF4|6429|serine/arginine-rich splicing factor 4##AK226084|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##CR456703|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK300889|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK025830|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK095099|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK225687|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##BC001419|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AF151821|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_001024732|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_016011|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK315274|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_001195001|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_005704|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133177|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133178|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X97198|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U73727|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##BC146655|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X95712|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U71075|PTPRU|10076|protein tyrosine phosphatase, receptor type, U	0.995043	0.0	denovo_WM_7:35:0.709
chr15	60702590	60702747	reg1011815.p2	5.012	+	AB587463 BC068065 BC009564 BC021114 BC052567 BC001388 BC013843 D00017 TSC_hg19_v1_chr15_-_60690186 AK222542 BX640598 AK297923 BC015834 BC023990 BC066955 BC093056 D28364 NM_001002857 NM_001002858 NM_001136015 NM_004039 AK309956 BC016774	-12507	-	TSC_hg19_v1_chr15_+_60296509 AK314075	-406119	+	EF565104 TSC_hg19_v1_chr15_+_60296453	-406219	+	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	68606	-	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	182011	-	U04899 U04898 NM_002943 NM_134260	217017	-	BC068065|ANXA2|302|annexin A2##BC009564|ANXA2|302|annexin A2##BC021114|ANXA2|302|annexin A2##BC052567|ANXA2|302|annexin A2##BC001388|ANXA2|302|annexin A2##BC013843|ANXA2|302|annexin A2##D00017|ANXA2|302|annexin A2##AK222542|ANXA2|302|annexin A2##BX640598|ANXA2|302|annexin A2##AK297923|ANXA2|302|annexin A2##BC015834|ANXA2|302|annexin A2##BC023990|ANXA2|302|annexin A2##BC066955|ANXA2|302|annexin A2##BC093056|ANXA2|302|annexin A2##D28364|ANXA2|302|annexin A2##NM_001002857|ANXA2|302|annexin A2##NM_001002858|ANXA2|302|annexin A2##NM_001136015|ANXA2|302|annexin A2##NM_004039|ANXA2|302|annexin A2##BC016774|ANXA2|302|annexin A2##AK314075|FOXB1|27023|forkhead box B1##BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A	0.994318	0.0	
chr2	130623107	130623238	reg1010698.p2	5.012	+	AK304326 BC096239 BC096240 BC099638 BC099639 NM_004807 AB006179 TSC_hg19_v1_chr2_-_129076443	-1546872	-	AK074376 TSC_hg19_v1_chr2_+_128928049	-1695125	+	TSC_hg19_v1_chr2_+_128848891 AF227905	-1774311	+	NM_032144 AL136727	114063	+	EF523384 NM_001099771 TSC_hg19_v1_chr2_-_130886919	263686	-	CU688330 AK297246 AK057609 NM_207310 BC067771 AK302804	279439	-	BC096239|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC096240|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099638|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099639|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##NM_004807|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AB006179|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AK074376|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##AF227905|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##NM_032144|RAB6C|84084|RAB6C, member RAS oncogene family##AL136727|RAB6C|84084|RAB6C, member RAS oncogene family##EF523384|POTEF|728378|POTE ankyrin domain family, member F##NM_001099771|POTEF|728378|POTE ankyrin domain family, member F##AK297246|CCDC74B|91409|coiled-coil domain containing 74B##AK057609|CCDC74B|91409|coiled-coil domain containing 74B##NM_207310|CCDC74B|91409|coiled-coil domain containing 74B##BC067771|CCDC74B|91409|coiled-coil domain containing 74B##AK302804|CCDC74B|91409|coiled-coil domain containing 74B	1.003872	0.0	denovo_WM_7:43:0.441	denovo_WM_7:44:0.453
chr3	16558824	16558938	reg1003071.p2	5.012	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-3657	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-3863	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-252173	+	BX648638 AK303026 NM_001190811	87389	-	U65918 U66726 U66078 BC027595 NM_001351	88085	-	AB029015 NM_001144382	367570	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	1.793915	0.0	denovo_WM_7:-85:0.358
chr9	70495845	70495961	reg1011188.p1	5.012	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-5727	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-5753	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-5763	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	360989	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	421921	+	BC033073 NM_021965	475911	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.494106	0.0	denovo_WM_7:-27:0.452
chr10	64287154	64287279	reg1009873.p2	5.011	+	AJ505150 NM_199452	-7010	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-153173	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-258677	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	277326	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	277441	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	288881	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.0	0.0	
chr1	9596278	9596360	reg1007794.p1	5.011	+	TSC_hg19_v1_chr1_+_9415945 CU677397	-180373	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	-243350	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	-243382	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	3213	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	3317	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	52637	+	AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201	0.0	0.0	
chr5	115988081	115988261	reg1002239.p2	5.011	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-77657	-	TSC_hg19_v1_chr5_+_115898220 D28352	-89947	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-567450	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2336067	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2418640	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2418994	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr10	11628325	11628476	reg1010103.p2	5.010	+	NM_001080491	-54127	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-420908	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-420954	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	25236	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	155998	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	236958	+	NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47	0.992159	0.0	denovo_WM_7:1:0.837
chr13	42853309	42853437	reg1009417.p2	5.010	+	TSC_hg19_v1_chr13_+_42846292 AF176555 NM_016248	-7088	+	AK302727 NM_001204505 NM_001204506 AK122909 AK302631 BC043292 BC044822	-141163	+	NM_152910 NM_178009 AB078967 AB078968	-230508	+	BC040889 NM_033012	283498	+	TSC_hg19_v1_chr13_+_43148289 NM_003701 AF019047 AB064268 AB064269 AB064270 BC117286 BC117288 BC074823 BC074890 HQ258604 AB061227	294961	+	NM_182508 AK310859 AK098238 BC093659 BC112237	502351	+	AF176555|AKAP11|11215|A kinase (PRKA) anchor protein 11##NM_016248|AKAP11|11215|A kinase (PRKA) anchor protein 11##AK302727|DGKH|160851|diacylglycerol kinase, eta##NM_001204505|DGKH|160851|diacylglycerol kinase, eta##NM_001204506|DGKH|160851|diacylglycerol kinase, eta##AK122909|DGKH|160851|diacylglycerol kinase, eta##AK302631|DGKH|160851|diacylglycerol kinase, eta##BC043292|DGKH|160851|diacylglycerol kinase, eta##BC044822|DGKH|160851|diacylglycerol kinase, eta##NM_152910|DGKH|160851|diacylglycerol kinase, eta##NM_178009|DGKH|160851|diacylglycerol kinase, eta##AB078967|DGKH|160851|diacylglycerol kinase, eta##AB078968|DGKH|160851|diacylglycerol kinase, eta##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_003701|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AF019047|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064268|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064269|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB064270|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117286|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC117288|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074823|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##BC074890|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##HQ258604|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##AB061227|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_182508|C13orf30|144809|chromosome 13 open reading frame 30##AK310859|C13orf30|144809|chromosome 13 open reading frame 30##AK098238|C13orf30|144809|chromosome 13 open reading frame 30##BC093659|C13orf30|144809|chromosome 13 open reading frame 30##BC112237|C13orf30|144809|chromosome 13 open reading frame 30	0.399332	0.0	denovo_WM_7:-14:0.384
chr15	44770695	44770792	reg1011099.p2	5.010	+	TSC_hg19_v1_chr15_+_44719836 BC018623 AK226094 DQ128104 BC035744	-50833	+	TSC_hg19_v1_chr15_+_44719826 AK291230 AF161478 AF161543	-50947	+	NM_016396	-51165	+	TSC_hg19_v1_chr15_-_44828876 AK092547 BC042851	58143	-	NM_003758 TSC_hg19_v1_chr15_+_44829270	58533	+	TSC_hg19_v1_chr15_+_44829313 AK023388	58569	+	BC018623|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK226094|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##DQ128104|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC035744|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK291230|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161478|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161543|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##NM_016396|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##NM_003758|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J	1.986757	0.0	denovo_WM_7:-68:0.540	denovo_WM_7:-69:0.270	denovo_WM_7:-83:0.329	denovo_WM_7:-84:0.599
chr2	32414644	32414824	reg1006372.p1	5.010	+	TSC_hg19_v1_chr2_+_32390932 NM_001193513 NM_001193514 NM_001193515 NM_017964 AK055663 AK096672 AK127716 AK304225 BC066903 EF560719 EF560726 AL832755 AF173387	-23805	+	TSC_hg19_v1_chr2_+_32288665 AB029006 BC150260 NM_014946 NM_199436 AJ246001	-126034	+	TSC_hg19_v1_chr2_-_32264863 AF226998 NM_032574 AK295755 BC015970	-149866	-	AY358152 BC031555 AK292673 AK314762 AK095467 NM_001199138	75195	-	AY035391 NM_001199139 AY027787 AY027788 AY027789 AY027790 NM_021209 AF376061	76071	-	TSC_hg19_v1_chr2_+_32502966 NM_032312	88228	+	NM_001193513|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193514|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193515|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_017964|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK055663|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK096672|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK127716|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK304225|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##BC066903|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560719|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560726|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AL832755|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AF173387|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AB029006|SPAST|6683|spastin##BC150260|SPAST|6683|spastin##NM_014946|SPAST|6683|spastin##NM_199436|SPAST|6683|spastin##AJ246001|SPAST|6683|spastin##AF226998|DPY30|84661|dpy-30 homolog (C. elegans)##NM_032574|DPY30|84661|dpy-30 homolog (C. elegans)##BC015970|DPY30|84661|dpy-30 homolog (C. elegans)##AY358152|NLRC4|58484|NLR family, CARD domain containing 4##BC031555|NLRC4|58484|NLR family, CARD domain containing 4##AK292673|NLRC4|58484|NLR family, CARD domain containing 4##AK314762|NLRC4|58484|NLR family, CARD domain containing 4##AK095467|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199138|NLRC4|58484|NLR family, CARD domain containing 4##AY035391|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199139|NLRC4|58484|NLR family, CARD domain containing 4##AY027787|NLRC4|58484|NLR family, CARD domain containing 4##AY027788|NLRC4|58484|NLR family, CARD domain containing 4##AY027789|NLRC4|58484|NLR family, CARD domain containing 4##AY027790|NLRC4|58484|NLR family, CARD domain containing 4##NM_021209|NLRC4|58484|NLR family, CARD domain containing 4##AF376061|NLRC4|58484|NLR family, CARD domain containing 4##NM_032312|YIPF4|84272|Yip1 domain family, member 4	1.987966	0.0	denovo_WM_7:-45:0.853	denovo_WM_7:-60:0.717	denovo_WM_7:-61:0.266
chr14	69864162	69864284	reg1008936.p2	5.009	+	AK299588 TSC_hg19_v1_chr14_+_69726876 AB032956 BC122545 BC098578 AK315848 AK289745 BC036812 AB384119 AB078143 AJ505951	-137286	+	NM_001168368 NM_020692	-137543	+	AK292563 NM_001193362 NM_001193363 AK295601 BX161412	-205707	+	BC071709 TSC_hg19_v1_chr14_-_69865012 BC014301 AK130850 AK312186 D85758 NM_004450 U66871	780	-	NM_001252151 NM_001252152 AK293222 AK316381 TSC_hg19_v1_chr14_+_69865137	895	+	TSC_hg19_v1_chr14_+_69865408 NM_001252148 NM_001252150 NM_018375 AK222547 AK002136 AK311104	1172	+	AK299588|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AB032956|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##BC122545|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##BC098578|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AK315848|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AK289745|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##BC036812|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AB078143|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AJ505951|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##NM_001168368|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##NM_020692|GALNTL1|57452|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1##AK292563|EXD2|55218|exonuclease 3'-5' domain containing 2##NM_001193362|EXD2|55218|exonuclease 3'-5' domain containing 2##NM_001193363|EXD2|55218|exonuclease 3'-5' domain containing 2##AK295601|EXD2|55218|exonuclease 3'-5' domain containing 2##BX161412|EXD2|55218|exonuclease 3'-5' domain containing 2##BC071709|ERH|2079|enhancer of rudimentary homolog (Drosophila)##BC014301|ERH|2079|enhancer of rudimentary homolog (Drosophila)##AK130850|ERH|2079|enhancer of rudimentary homolog (Drosophila)##AK312186|ERH|2079|enhancer of rudimentary homolog (Drosophila)##D85758|ERH|2079|enhancer of rudimentary homolog (Drosophila)##NM_004450|ERH|2079|enhancer of rudimentary homolog (Drosophila)##U66871|ERH|2079|enhancer of rudimentary homolog (Drosophila)##NM_001252151|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252152|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK293222|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK316381|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252148|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252150|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_018375|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK222547|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK002136|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9	0.989848	0.0	denovo_WM_7:-45:0.695	denovo_WM_7:-46:0.270
chr17	2695071	2695189	reg1007192.p2	5.009	+	AK124640 TSC_hg19_v1_chr17_+_2680496	-14707	+	NM_015229 TSC_hg19_v1_chr17_-_2615039	-80143	-	TSC_hg19_v1_chr17_+_2497263 BX538346 AK313078 L13385 BC064638	-197872	+	AJ628446 AJ628447 NM_001100398 NM_015085 TSC_hg19_v1_chr17_+_2699761 CR627427 BC140870 BC140871	4623	+	BC106876 NM_014566 AB529301	271797	-	AB529300 BC069552 BC106735 BC106736 NM_002548	301159	-	AK124640|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015229|KIAA0664|23277|KIAA0664##BX538346|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AK313078|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13385|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BC064638|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AJ628446|RAP1GAP2|23108|RAP1 GTPase activating protein 2##AJ628447|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_001100398|RAP1GAP2|23108|RAP1 GTPase activating protein 2##NM_015085|RAP1GAP2|23108|RAP1 GTPase activating protein 2##CR627427|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140870|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC140871|RAP1GAP2|23108|RAP1 GTPase activating protein 2##BC106876|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##NM_014566|OR1D5|8386|olfactory receptor, family 1, subfamily D, member 5##BC069552|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106735|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##BC106736|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2##NM_002548|OR1D2|4991|olfactory receptor, family 1, subfamily D, member 2	0.993691	0.0	
chr2	238661609	238661761	reg1008087.p1	5.009	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-60610	+	TSC_hg19_v1_chr2_+_238600975 AJ223075 BC001385 AK298270 U69609 BC108913 BC108914 AK307485	-60742	+	TSC_hg19_v1_chr2_+_238600798 BC018883 BC019335 NM_001137551 NM_001137552 NM_001137553 NM_004735	-60878	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	45735	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	106567	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	213939	+	EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AJ223075|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC001385|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK298270|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##U69609|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108913|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108914|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK307485|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC018883|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC019335|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137551|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137552|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137553|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_004735|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.0	0.0	
chr3	13539052	13539189	reg1007061.p1	5.009	+	NM_024827 TSC_hg19_v1_chr3_+_13521806 AK299021 AK025426 AK025890 BC009676 NM_001136041 AK293223	-17308	+	TSC_hg19_v1_chr3_-_13461832 BC020573 NM_024923	-77303	-	AB384541 TSC_hg19_v1_chr3_-_13461731 BC067089	-77388	-	AK129883 NM_001004019 NM_001998 TSC_hg19_v1_chr3_+_13590624	51505	+	TSC_hg19_v1_chr3_+_13590656 BC051690 AY130459 X82494	51543	+	AK304827 NM_001165035	71119	+	NM_024827|HDAC11|79885|histone deacetylase 11##AK299021|HDAC11|79885|histone deacetylase 11##AK025426|HDAC11|79885|histone deacetylase 11##AK025890|HDAC11|79885|histone deacetylase 11##BC009676|HDAC11|79885|histone deacetylase 11##NM_001136041|HDAC11|79885|histone deacetylase 11##AK293223|HDAC11|79885|histone deacetylase 11##BC020573|NUP210|23225|nucleoporin 210kDa##NM_024923|NUP210|23225|nucleoporin 210kDa##BC067089|NUP210|23225|nucleoporin 210kDa##AK129883|FBLN2|2199|fibulin 2##NM_001004019|FBLN2|2199|fibulin 2##NM_001998|FBLN2|2199|fibulin 2##BC051690|FBLN2|2199|fibulin 2##AY130459|FBLN2|2199|fibulin 2##X82494|FBLN2|2199|fibulin 2##AK304827|FBLN2|2199|fibulin 2##NM_001165035|FBLN2|2199|fibulin 2	0.0	0.0	
chr11	8835754	8835896	reg1009572.p1	5.008	+	NM_139157 U15131 U15780	-2944	-	AK312305 TSC_hg19_v1_chr11_-_8832217 BX647431 NM_213618	-3610	-	U15779 S45936 TSC_hg19_v1_chr11_-_8739580	-96322	-	TSC_hg19_v1_chr11_-_8892920 AK126554	57092	-	BC036655 NM_005418	96672	-	AF493783 AF493784 AF493785 NM_001206646 NM_001206647 NM_001206648 NM_020642 TSC_hg19_v1_chr11_+_8932745 AK294506 AK294549 AK075308	96925	+	NM_139157|ST5|6764|suppression of tumorigenicity 5##U15131|ST5|6764|suppression of tumorigenicity 5##U15780|ST5|6764|suppression of tumorigenicity 5##AK312305|ST5|6764|suppression of tumorigenicity 5##BX647431|ST5|6764|suppression of tumorigenicity 5##NM_213618|ST5|6764|suppression of tumorigenicity 5##U15779|ST5|6764|suppression of tumorigenicity 5##S45936|ST5|6764|suppression of tumorigenicity 5##AK126554|ST5|6764|suppression of tumorigenicity 5##BC036655|ST5|6764|suppression of tumorigenicity 5##NM_005418|ST5|6764|suppression of tumorigenicity 5##AF493783|AKIP1|56672|A kinase (PRKA) interacting protein 1##AF493784|AKIP1|56672|A kinase (PRKA) interacting protein 1##AF493785|AKIP1|56672|A kinase (PRKA) interacting protein 1##NM_001206646|AKIP1|56672|A kinase (PRKA) interacting protein 1##NM_001206647|AKIP1|56672|A kinase (PRKA) interacting protein 1##NM_001206648|AKIP1|56672|A kinase (PRKA) interacting protein 1##NM_020642|AKIP1|56672|A kinase (PRKA) interacting protein 1##AK294506|AKIP1|56672|A kinase (PRKA) interacting protein 1##AK294549|AKIP1|56672|A kinase (PRKA) interacting protein 1##AK075308|AKIP1|56672|A kinase (PRKA) interacting protein 1	0.998388	0.0	denovo_WM_7:0:0.229	denovo_WM_7:0:0.229	denovo_WM_7:-1:0.229	denovo_WM_7:-2:0.229
chr12	120604204	120604333	reg1003482.p1	5.008	+	TSC_hg19_v1_chr12_+_120554697 BC041995 AK130486	-49559	+	TSC_hg19_v1_chr12_-_120554632 NM_001167606 NM_006861	-49629	-	TSC_hg19_v1_chr12_-_120554558 AK300127	-49703	-	TSC_hg19_v1_chr12_-_120632504 AB587307 AK297271 BC153881 D86973 NM_006836	28220	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	34633	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	34642	-	NM_001167606|RAB35|11021|RAB35, member RAS oncogene family##NM_006861|RAB35|11021|RAB35, member RAS oncogene family##AK300127|RAB35|11021|RAB35, member RAS oncogene family##AK297271|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC153881|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##D86973|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##NM_006836|GCN1L1|10985|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0	1.042171	0.0	
chr2	135809345	135809448	reg1009954.p1	5.008	+	BC137276 BC137277 BC144555 AY574901 AY574902 AY574903 AY574904 AY574905 NM_001018046 NM_025052	-27150	-	TSC_hg19_v1_chr2_+_135676409 AF048732	-132977	+	TSC_hg19_v1_chr2_+_135676397 AK294889 NM_001241 NM_058241 AF048731 AK292913 BC114366	-132999	+	NM_001172435 NM_012233 TSC_hg19_v1_chr2_+_135809861 AK022494 BC146809 BC071602 D31886 AB385272 AB449877 BC030992	520	+	AK095362 BC089429 NM_032143	479390	-	TSC_hg19_v1_chr2_+_136289050 BC001217 D21852 BC041093 NM_015361	479664	+	BC137276|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC137277|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC144555|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574901|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574902|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574903|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574904|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574905|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_001018046|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_025052|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AF048732|CCNT2|905|cyclin T2##AK294889|CCNT2|905|cyclin T2##NM_001241|CCNT2|905|cyclin T2##NM_058241|CCNT2|905|cyclin T2##AF048731|CCNT2|905|cyclin T2##AK292913|CCNT2|905|cyclin T2##BC114366|CCNT2|905|cyclin T2##NM_001172435|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##NM_012233|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK022494|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC146809|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC071602|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##D31886|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AB449877|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC030992|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK095362|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC089429|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_032143|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC001217|R3HDM1|23518|R3H domain containing 1##D21852|R3HDM1|23518|R3H domain containing 1##BC041093|R3HDM1|23518|R3H domain containing 1##NM_015361|R3HDM1|23518|R3H domain containing 1	1.992917	0.0	denovo_WM_7:-82:0.221	denovo_WM_7:-104:0.221
chr6	149187947	149188087	reg1008592.p1	5.008	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-119808	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-523826	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-524027	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	451086	+	AK315038 NM_015093 AK307650	451424	+	AY340238 NM_001002255 BC130305 HQ258040	533491	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.988911	0.0	denovo_WM_7:21:0.977
chr9	69268249	69268378	reg1011028.p1	5.008	+	AF265442 BC069006 AK293173 NM_001085457	-5759	-	NM_001085476	-66110	-	TSC_hg19_v1_chr9_+_69065493 AK311167	-202775	+	AL136793 NM_001098805	113667	+	NM_001126334	910501	-	NM_001099279 NM_199244	1161417	-	AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.494106	0.0	denovo_WM_7:-17:0.452
chr10	69532794	69532974	reg1003956.p1	5.007	+	AF091606 AK313882 NM_013266	-76947	-	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	-107488	-	NM_178011 BX640611 AY358315 BC111492	-847069	+	CR457184 AF176013 BC017018 AK289537 AF176012 NM_021800 NM_201262	64968	-	TSC_hg19_v1_chr10_+_69644413 AF083106 NM_012238 AF235040	111523	+	AL136741 BC012499 TSC_hg19_v1_chr10_+_69644874	111908	+	AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##CR457184|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176013|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##BC017018|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AK289537|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF176012|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_021800|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##NM_201262|DNAJC12|56521|DnaJ (Hsp40) homolog, subfamily C, member 12##AF083106|SIRT1|23411|sirtuin 1##NM_012238|SIRT1|23411|sirtuin 1##AF235040|SIRT1|23411|sirtuin 1##AL136741|SIRT1|23411|sirtuin 1##BC012499|SIRT1|23411|sirtuin 1	0.0	0.0	
chr1	233733210	233733326	reg1003802.p1	5.006	+	AJ311797 AJ311798 NM_032435 BC136648 BC136649	-269685	+	NM_014801 TSC_hg19_v1_chr1_-_233431485 AK092353 AX747494	-301785	-	TSC_hg19_v1_chr1_+_233086381 AF416713	-646879	+	NM_002245 U33632 U90065 AK314016 BC018051 U76996 TSC_hg19_v1_chr1_+_233749898	16555	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	16651	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	307344	+	AJ311797|KIAA1804|84451|mixed lineage kinase 4##AJ311798|KIAA1804|84451|mixed lineage kinase 4##NM_032435|KIAA1804|84451|mixed lineage kinase 4##BC136648|KIAA1804|84451|mixed lineage kinase 4##BC136649|KIAA1804|84451|mixed lineage kinase 4##NM_014801|PCNXL2|80003|pecanex-like 2 (Drosophila)##AK092353|PCNXL2|80003|pecanex-like 2 (Drosophila)##AF416713|NTPCR|84284|nucleoside-triphosphatase, cancer-related##NM_002245|KCNK1|3775|potassium channel, subfamily K, member 1##U33632|KCNK1|3775|potassium channel, subfamily K, member 1##U90065|KCNK1|3775|potassium channel, subfamily K, member 1##AK314016|KCNK1|3775|potassium channel, subfamily K, member 1##BC018051|KCNK1|3775|potassium channel, subfamily K, member 1##U76996|KCNK1|3775|potassium channel, subfamily K, member 1##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3	0.0	0.0	
chr15	78928870	78929050	reg1010687.p1	5.006	+	TSC_hg19_v1_chr15_-_78913532 BC098443 BC006114 NM_000743 NM_001166694	-15388	-	AF385584 Y08418 BT006646 BT006897 CU674246 CU675253 M86383 M37981 TSC_hg19_v1_chr15_-_78913298 BC000513 BC001642 BC002996 U62432	-15727	-	TSC_hg19_v1_chr15_+_78857888 NM_000745 BC033639 U62434 AF385586 M83712 CU689678 DQ893355 DQ896674 EU176798 Y08419	-71016	+	TSC_hg19_v1_chr15_-_78933573 U62439 Y08416 BC096080 BC096081 BC096082 BC096083 NM_000750 U48861	4613	-	TSC_hg19_v1_chr15_+_79102818 AK095823	173867	+	AY327122 AF140675 TSC_hg19_v1_chr15_-_79103698 BC061631 NM_014272 AK299844	174790	-	BC098443|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC006114|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_000743|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_001166694|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##AF385584|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##Y08418|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006646|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006897|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##M37981|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC000513|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC001642|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC002996|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##U62432|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_000745|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##BC033639|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##U62434|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##AF385586|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##M83712|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ893355|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ896674|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##EU176798|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##Y08419|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##U62439|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##Y08416|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096080|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096081|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096082|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096083|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##NM_000750|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##U48861|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##AK095823|MORF4L1|10933|mortality factor 4 like 1##AY327122|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##AF140675|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##BC061631|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##NM_014272|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7##AK299844|ADAMTS7|11173|ADAM metallopeptidase with thrombospondin type 1 motif, 7	0.990986	0.0	denovo_WM_7:1:0.815
chr16	81272074	81272254	reg1009891.p1	5.006	+	AY164483 NM_001076780 NM_052892	-18190	-	BT009827 CR457072 AK311978 M69175 BC000790 BC009065 BC020922 TSC_hg19_v1_chr16_-_81130001 D00723 NM_004483	-142211	-	AK057264 AK295411 BC064143 NM_001100873 NM_152337	-161327	-	AK296011 AF294900 AK001592 BC022269 NM_017429 BC126210 BC126212 HQ258298	239	+	TSC_hg19_v1_chr16_+_81348566 AK095378 NM_022041 AF291673	76405	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	76486	+	AY164483|PKD1L2|114780|polycystic kidney disease 1-like 2##NM_001076780|PKD1L2|114780|polycystic kidney disease 1-like 2##NM_052892|PKD1L2|114780|polycystic kidney disease 1-like 2##BT009827|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##CR457072|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##AK311978|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##M69175|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##BC000790|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##BC009065|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##BC020922|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##D00723|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##NM_004483|GCSH|2653|glycine cleavage system protein H (aminomethyl carrier)##AK057264|C16orf46|123775|chromosome 16 open reading frame 46##AK295411|C16orf46|123775|chromosome 16 open reading frame 46##BC064143|C16orf46|123775|chromosome 16 open reading frame 46##NM_001100873|C16orf46|123775|chromosome 16 open reading frame 46##NM_152337|C16orf46|123775|chromosome 16 open reading frame 46##AK296011|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AF294900|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AK001592|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC022269|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##NM_017429|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC126210|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC126212|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##HQ258298|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AK095378|GAN|8139|gigaxonin##NM_022041|GAN|8139|gigaxonin##AF291673|GAN|8139|gigaxonin##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin	0.99746	0.0	denovo_WM_7:-11:0.984
chr17_ctg5_hap1	1361475	1361645	reg1012167.p1	5.006	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr2	129871543	129871723	reg1010633.p1	5.006	+	AK304326 BC096239 BC096240 BC099638 BC099639 NM_004807 AB006179 TSC_hg19_v1_chr2_-_129076443	-795333	-	AK074376 TSC_hg19_v1_chr2_+_128928049	-943586	+	TSC_hg19_v1_chr2_+_128848891 AF227905	-1022772	+	NM_032144 AL136727	865602	+	EF523384 NM_001099771 TSC_hg19_v1_chr2_-_130886919	1015225	-	CU688330 AK297246 AK057609 NM_207310 BC067771 AK302804	1030978	-	BC096239|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC096240|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099638|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099639|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##NM_004807|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AB006179|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AK074376|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##AF227905|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##NM_032144|RAB6C|84084|RAB6C, member RAS oncogene family##AL136727|RAB6C|84084|RAB6C, member RAS oncogene family##EF523384|POTEF|728378|POTE ankyrin domain family, member F##NM_001099771|POTEF|728378|POTE ankyrin domain family, member F##AK297246|CCDC74B|91409|coiled-coil domain containing 74B##AK057609|CCDC74B|91409|coiled-coil domain containing 74B##NM_207310|CCDC74B|91409|coiled-coil domain containing 74B##BC067771|CCDC74B|91409|coiled-coil domain containing 74B##AK302804|CCDC74B|91409|coiled-coil domain containing 74B	0.03778	0.0	
chr2	26979340	26979476	reg1006258.p1	5.006	+	TSC_hg19_v1_chr2_+_26915710 BC140701 NM_002246 AF006823 AF065163	-63765	+	BC140923 NM_001029881 BC127685 BC127684	-115186	-	TSC_hg19_v1_chr2_+_26785463 NM_001105519	-193940	+	TSC_hg19_v1_chr2_+_26987155 AK000562 NM_017877 BC028081 BC035519 BX647807 AK075164 AK296996 BC011013 AK299598 AY358820 AK222929 BX648017 CU688388 CR457243	7761	+	NM_001809 NM_001042426 TSC_hg19_v1_chr2_+_27008894	29484	+	TSC_hg19_v1_chr2_+_27008924 U14518 BC000881 BC002703 CU674442 BT007246	29580	+	BC140701|KCNK3|3777|potassium channel, subfamily K, member 3##NM_002246|KCNK3|3777|potassium channel, subfamily K, member 3##AF006823|KCNK3|3777|potassium channel, subfamily K, member 3##AF065163|KCNK3|3777|potassium channel, subfamily K, member 3##BC140923|CIB4|130106|calcium and integrin binding family member 4##NM_001029881|CIB4|130106|calcium and integrin binding family member 4##BC127685|CIB4|130106|calcium and integrin binding family member 4##BC127684|CIB4|130106|calcium and integrin binding family member 4##NM_001105519|C2orf70|339778|chromosome 2 open reading frame 70##AK000562|C2orf18|54978|chromosome 2 open reading frame 18##NM_017877|C2orf18|54978|chromosome 2 open reading frame 18##BC028081|C2orf18|54978|chromosome 2 open reading frame 18##BC035519|C2orf18|54978|chromosome 2 open reading frame 18##BX647807|C2orf18|54978|chromosome 2 open reading frame 18##AK075164|C2orf18|54978|chromosome 2 open reading frame 18##AK296996|C2orf18|54978|chromosome 2 open reading frame 18##BC011013|CENPA|1058|centromere protein A##AK299598|C2orf18|54978|chromosome 2 open reading frame 18##AY358820|C2orf18|54978|chromosome 2 open reading frame 18##AK222929|C2orf18|54978|chromosome 2 open reading frame 18##BX648017|C2orf18|54978|chromosome 2 open reading frame 18##CR457243|C2orf18|54978|chromosome 2 open reading frame 18##NM_001809|CENPA|1058|centromere protein A##NM_001042426|CENPA|1058|centromere protein A##U14518|CENPA|1058|centromere protein A##BC000881|CENPA|1058|centromere protein A##BC002703|CENPA|1058|centromere protein A##BT007246|CENPA|1058|centromere protein A	0.999132	0.0	denovo_WM_7:-89:0.239	denovo_WM_7:-90:0.239	denovo_WM_7:-91:0.239	denovo_WM_7:-92:0.239
chr3	121810358	121810524	reg1009437.p1	5.006	+	NM_006889 NM_176892 U04343	-13719	+	NM_001206924 NM_001206925 NM_175862 AK294663 AK301237 AK316203 BC040261 L25259 AK291497 AK313103	-36187	+	AY672837 AY672839 BC044240 AY134857 TSC_hg19_v1_chr3_-_121741095 AK129974 NM_001199799 NM_001199800 NM_175924	-69394	-	NM_000388 U20759	92088	+	NM_001178065 U20760	92739	+	NM_005213 AK291308 BC010379 X05978 CR456914	233633	+	NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule##NM_001206924|CD86|942|CD86 molecule##NM_001206925|CD86|942|CD86 molecule##NM_175862|CD86|942|CD86 molecule##AK294663|CD86|942|CD86 molecule##AK301237|CD86|942|CD86 molecule##AK316203|CD86|942|CD86 molecule##BC040261|CD86|942|CD86 molecule##L25259|CD86|942|CD86 molecule##AK291497|CD86|942|CD86 molecule##AK313103|CD86|942|CD86 molecule##AY672837|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY672839|ILDR1|286676|immunoglobulin-like domain containing receptor 1##BC044240|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AY134857|ILDR1|286676|immunoglobulin-like domain containing receptor 1##AK129974|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199799|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_001199800|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_175924|ILDR1|286676|immunoglobulin-like domain containing receptor 1##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor##NM_005213|CSTA|1475|cystatin A (stefin A)##AK291308|CSTA|1475|cystatin A (stefin A)##BC010379|CSTA|1475|cystatin A (stefin A)##X05978|CSTA|1475|cystatin A (stefin A)##CR456914|CSTA|1475|cystatin A (stefin A)	0.071877	0.0	
chr6	52175125	52175230	reg1007269.p1	5.006	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-25598	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-25657	-	AB528319 DQ893654 DQ895840 TSC_hg19_v1_chr6_-_52149506 AK312928 AK300754 X62153 AY032603	-25686	-	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	51780	+	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	109901	+	AK297632 NM_001172420	110627	+	D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##DQ893654|MCM3|4172|minichromosome maintenance complex component 3##DQ895840|MCM3|4172|minichromosome maintenance complex component 3##AK312928|MCM3|4172|minichromosome maintenance complex component 3##AK300754|MCM3|4172|minichromosome maintenance complex component 3##X62153|MCM3|4172|minichromosome maintenance complex component 3##AY032603|MCM3|4172|minichromosome maintenance complex component 3##NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1	0.992107	0.0	
chr16	85769231	85769321	reg1008414.p2	5.005	+	BC003186 NM_016095 TSC_hg19_v1_chr16_-_85722590	-46677	-	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	-46734	-	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	-122323	+	TSC_hg19_v1_chr16_-_85784703 NM_206967	15412	-	BT007132 CU675661 AF005888 TSC_hg19_v1_chr16_-_85833151 BC007445 BC001472 BC005886 BC020250 AK313977 NM_001142288 NM_006067	63765	-	NM_001861 TSC_hg19_v1_chr16_+_85833279 BC047869 U90915	63957	+	BC003186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_016095|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##NM_206967|C16orf74|404550|chromosome 16 open reading frame 74##BT007132|COX4NB|10328|COX4 neighbor##AF005888|COX4NB|10328|COX4 neighbor##BC007445|COX4NB|10328|COX4 neighbor##BC001472|COX4NB|10328|COX4 neighbor##BC005886|COX4NB|10328|COX4 neighbor##BC020250|COX4NB|10328|COX4 neighbor##AK313977|COX4NB|10328|COX4 neighbor##NM_001142288|COX4NB|10328|COX4 neighbor##NM_006067|COX4NB|10328|COX4 neighbor##NM_001861|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC047869|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##U90915|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1	0.592053	0.0	denovo_WM_7:21:0.487
chr18	3771783	3771898	reg1007931.p2	5.005	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-177698	+	NM_173211	-318069	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-320209	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	73490	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	102444	-	AK294777 AK294717 NM_001242762 NM_001242763	102887	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.997127	0.0	denovo_WM_7:5:0.911
chr2	48115886	48116055	reg1008188.p1	5.005	+	AK304140 AK315108 NM_025133	-119	-	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	-105674	+	TSC_hg19_v1_chr2_-_47918421 D28393	-197551	-	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	16823	-	TSC_hg19_v1_chr2_+_48541851 NM_002158 BC063305	425848	+	AY134855 NM_001135629 NM_001193475 NM_152994 TSC_hg19_v1_chr2_+_48667936 AK172762 AK122900 AY092062 BC111059 AK307755 BC117279 BC143466 BC143463 BC040721	552002	+	AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##D28393|RPL18A|6142|ribosomal protein L18a##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11##NM_002158|FOXN2|3344|forkhead box N2##BC063305|FOXN2|3344|forkhead box N2##AY134855|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001135629|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001193475|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_152994|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK172762|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK122900|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AY092062|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC111059|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK307755|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC117279|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143466|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143463|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC040721|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21	0.0	0.0	
chr3	25706886	25706990	reg1010553.p1	5.005	+	TSC_hg19_v1_chr3_-_25706395 AK296510 AK307450	-545	-	TSC_hg19_v1_chr3_-_25706085 NM_001068 X68060 Z15111	-963	-	AB208879 TSC_hg19_v1_chr3_-_25683850	-23100	-	TSC_hg19_v1_chr3_-_25824906 BC000963 AK022471 DQ893509 DQ896501 AK310473	117949	-	TSC_hg19_v1_chr3_-_25824932 BC017220 AF250924 BC007226	117983	-	TSC_hg19_v1_chr3_-_25824955 NM_001145293 NM_001145295 NM_018297	118032	-	AK296510|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##AK307450|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##NM_001068|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##X68060|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##Z15111|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##AB208879|TOP2B|7155|topoisomerase (DNA) II beta 180kDa##BC000963|NGLY1|55768|N-glycanase 1##AK022471|NGLY1|55768|N-glycanase 1##DQ893509|NGLY1|55768|N-glycanase 1##DQ896501|NGLY1|55768|N-glycanase 1##AK310473|NGLY1|55768|N-glycanase 1##BC017220|NGLY1|55768|N-glycanase 1##AF250924|NGLY1|55768|N-glycanase 1##BC007226|NGLY1|55768|N-glycanase 1##NM_001145293|NGLY1|55768|N-glycanase 1##NM_001145295|NGLY1|55768|N-glycanase 1##NM_018297|NGLY1|55768|N-glycanase 1	0.0	0.0	
chr4	40229061	40229202	reg1007902.p1	5.005	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-30490	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-170599	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-249538	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	108314	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	287453	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	288827	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.0	0.0	
chr8	131049069	131049207	reg1011253.p1	5.005	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-20255	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-20444	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-20479	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	406893	-	NM_001115	1003696	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1867219	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.0	0.0	
chr18	29233314	29233459	reg1007792.p1	5.004	+	NM_000371 TSC_hg19_v1_chr18_+_29171839 AK312051 BC005310 BC020791 D00096 GU727633 K02091 M10605 X59498 AF162690 BT007189 CR456908 DQ778081 DQ839490 U19780	-61589	+	NM_001943 TSC_hg19_v1_chr18_+_29078205 BC099655 BC099656 BC099657 Z26317 AK308408	-155243	+	AK290367 NM_001944 M76482	-205642	+	AB024742 BC074835 BC074884 BC069620 BC069642 AF069054 AK314860 AF097159 NM_004775	31153	-	BC103999 BC104000 BC104001 AK302337 NM_001034172	107384	-	BC127109 BC127110 TSC_hg19_v1_chr18_-_29523061	289638	-	NM_000371|TTR|7276|transthyretin##AK312051|TTR|7276|transthyretin##BC005310|TTR|7276|transthyretin##BC020791|TTR|7276|transthyretin##D00096|TTR|7276|transthyretin##GU727633|TTR|7276|transthyretin##K02091|TTR|7276|transthyretin##M10605|TTR|7276|transthyretin##X59498|TTR|7276|transthyretin##AF162690|TTR|7276|transthyretin##BT007189|TTR|7276|transthyretin##CR456908|TTR|7276|transthyretin##DQ839490|TTR|7276|transthyretin##U19780|TTR|7276|transthyretin##NM_001943|DSG2|1829|desmoglein 2##BC099655|DSG2|1829|desmoglein 2##BC099656|DSG2|1829|desmoglein 2##BC099657|DSG2|1829|desmoglein 2##Z26317|DSG2|1829|desmoglein 2##AK308408|DSG2|1829|desmoglein 2##AK290367|DSG3|1830|desmoglein 3##NM_001944|DSG3|1830|desmoglein 3##M76482|DSG3|1830|desmoglein 3##AB024742|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC074835|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC074884|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC069620|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC069642|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AF069054|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AK314860|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AF097159|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##NM_004775|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC103999|MCART2|147407|mitochondrial carrier triple repeat 2##BC104000|MCART2|147407|mitochondrial carrier triple repeat 2##BC104001|MCART2|147407|mitochondrial carrier triple repeat 2##AK302337|MCART2|147407|mitochondrial carrier triple repeat 2##NM_001034172|MCART2|147407|mitochondrial carrier triple repeat 2##BC127109|TRAPPC8|22878|trafficking protein particle complex 8##BC127110|TRAPPC8|22878|trafficking protein particle complex 8	1.992244	0.0	denovo_WM_7:14:0.780	denovo_WM_7:29:0.855
chr19	8060788	8060897	reg1008438.p2	5.004	+	TSC_hg19_v1_chr19_-_8008615 AK289634 NM_006351	-52186	-	AF026030 BC000679 AB590328 CU689670 BC033628 TSC_hg19_v1_chr19_-_8008548 DQ891301 DQ894486 AK223062 AK309415 AF041254	-52290	-	TSC_hg19_v1_chr19_-_7991004 BC062702 AK098834 NM_206833	-69826	-	TSC_hg19_v1_chr19_-_8070526 U38175 BC003376 NM_001419	9683	-	AK292662 NM_001201359 NM_005624	56803	+	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	57105	+	AK289634|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##NM_006351|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF026030|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC033628|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ891301|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ894486|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK223062|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK309415|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF041254|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC062702|CTXN1|404217|cortexin 1##AK098834|CTXN1|404217|cortexin 1##NM_206833|CTXN1|404217|cortexin 1##U38175|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##BC003376|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##NM_001419|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25	1.747982	0.0	denovo_WM_7:-34:0.981	denovo_WM_7:93:0.754
chr11	116894931	116895091	reg1010278.p1	5.003	+	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-186656	-	TSC_hg19_v1_chr11_+_116700622 BC121081 BC134419 NM_000040 BC027977	-194387	+	HQ258218 HQ258399 BC113594 BC113596 BC074764 X13629 M13654 NM_000482 TSC_hg19_v1_chr11_-_116694025	-201045	-	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	74022	-	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	120022	+	TSC_hg19_v1_chr11_+_117049458 AK292501	154546	+	X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##BC121081|APOC3|345|apolipoprotein C-III##BC134419|APOC3|345|apolipoprotein C-III##NM_000040|APOC3|345|apolipoprotein C-III##BC027977|APOC3|345|apolipoprotein C-III##HQ258218|APOA4|337|apolipoprotein A-IV##HQ258399|APOA4|337|apolipoprotein A-IV##BC113594|APOA4|337|apolipoprotein A-IV##BC113596|APOA4|337|apolipoprotein A-IV##BC074764|APOA4|337|apolipoprotein A-IV##X13629|APOA4|337|apolipoprotein A-IV##M13654|APOA4|337|apolipoprotein A-IV##NM_000482|APOA4|337|apolipoprotein A-IV##BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292501|SIDT2|51092|SID1 transmembrane family, member 2	0.999752	0.0	denovo_WM_7:30:0.298	denovo_WM_7:31:0.298	denovo_WM_7:32:0.298
chr11	65236412	65236578	reg1011162.p1	5.003	+	TSC_hg19_v1_chr11_+_65193527 AF080092 AF508303	-42972	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	-44095	+	TSC_hg19_v1_chr11_+_65190274 AK026198	-46217	+	TSC_hg19_v1_chr11_+_65265158 EF177381	28708	+	TSC_hg19_v1_chr11_+_65266515 BC025986 BX538238 FJ209305	30006	+	TSC_hg19_v1_chr11_+_65266869 BC104662	30304	+	AF080092|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF508303|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##EF177381|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BC025986|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BX538238|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	0.0	0.058697	
chr16	2115383	2115541	reg1014711.p1	5.003	+	TSC_hg19_v1_chr16_+_2097985 AB210000 NM_000548 NM_001077183 NM_001114382 AK294548 AK295672 AK299343 BC150300 BX647816	-17451	+	Y09687 TSC_hg19_v1_chr16_-_2097836 BC000391 BC003014 U81285 AB001575 AB528626 AK298247 NM_002528 U79718	-17620	-	NM_001252073 NM_001252075 NM_001252076 TSC_hg19_v1_chr16_+_2083294	-32182	+	TSC_hg19_v1_chr16_+_2128185 AK125096	12750	+	AB209025 TSC_hg19_v1_chr16_-_2159898	44416	-	U24497 TSC_hg19_v1_chr16_-_2185898 L33243 NM_000296 NM_001009944	70437	-	AB210000|TSC2|7249|tuberous sclerosis 2##NM_000548|TSC2|7249|tuberous sclerosis 2##NM_001077183|TSC2|7249|tuberous sclerosis 2##NM_001114382|TSC2|7249|tuberous sclerosis 2##AK295672|TSC2|7249|tuberous sclerosis 2##AK299343|TSC2|7249|tuberous sclerosis 2##BC150300|TSC2|7249|tuberous sclerosis 2##BX647816|TSC2|7249|tuberous sclerosis 2##Y09687|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##BC000391|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##BC003014|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##U81285|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##AB001575|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##NM_002528|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##U79718|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##NM_001252073|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##NM_001252075|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##NM_001252076|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##AK125096|TSC2|7249|tuberous sclerosis 2##AB209025|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##U24497|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##L33243|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_000296|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)##NM_001009944|PKD1|5310|polycystic kidney disease 1 (autosomal dominant)	0.999064	0.0	
chr2	25575740	25575879	reg1010114.p1	5.003	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-10347	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-10446	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-10481	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	320592	-	AB385496 TSC_hg19_v1_chr2_-_26101159	525320	-	TSC_hg19_v1_chr2_-_26101174 AB084279	525364	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.704034	0.0	denovo_WM_7:9:0.487
chr4	77776228	77776368	reg1010166.p1	5.003	+	TSC_hg19_v1_chr4_+_77610738 AK304103	-165547	+	AK027744 TSC_hg19_v1_chr4_+_77610613	-165687	+	AB055660 NM_020859	-420046	+	NM_001029870 BC137241 BC137255	42741	-	TSC_hg19_v1_chr4_+_77870905 BC008083 NM_018243	94587	+	TSC_hg19_v1_chr4_+_77870908 BC064934	94614	+	AK304103|SHROOM3|57619|shroom family member 3##AK027744|SHROOM3|57619|shroom family member 3##AB055660|SHROOM3|57619|shroom family member 3##NM_020859|SHROOM3|57619|shroom family member 3##NM_001029870|ANKRD56|345079|ankyrin repeat domain 56##BC137241|ANKRD56|345079|ankyrin repeat domain 56##BC137255|ANKRD56|345079|ankyrin repeat domain 56##BC008083|SEPT11|55752|septin 11##NM_018243|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11	0.997557	0.0	
chr9	131418380	131418560	reg1003095.p2	5.003	+	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-29727	+	X86901 TSC_hg19_v1_chr9_+_131388179	-30292	+	TSC_hg19_v1_chr9_+_131314868 NM_001130438 NM_001195532 NM_003127 AK294753 AK300386 AK307676 BC034956 AB191262 AB209860 BC051801 J05243 BC053521 U83867	-103680	+	TSC_hg19_v1_chr9_-_131418938 BC001614	493	-	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	596	-	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	27534	+	AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##X86901|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001130438|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001195532|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_003127|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK294753|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK300386|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK307676|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC034956|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB191262|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB209860|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC051801|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##J05243|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC053521|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##U83867|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC001614|WDR34|89891|WD repeat domain 34##BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene	0.880327	0.0	denovo_WM_7:25:0.227	denovo_WM_7:26:0.362	denovo_WM_7:27:0.220
chr16	67372643	67372823	reg1010167.p2	5.002	+	TSC_hg19_v1_chr16_+_67360728 AY963267 BC026156 NM_018296 BC018031	-11981	+	BC070103 BC094790 AK302748 AK302567 BC117335 NM_001100915 AK097481	-12089	-	TSC_hg19_v1_chr16_+_67313455 BC063501 NM_001129729 NM_001129731 BC054486	-59291	+	AK311487 NM_001161575 AK297329 AK309897 AK001866 AK292311 AY313780 AK301766	8545	+	TSC_hg19_v1_chr16_-_67427402 AF132972 AF078846 BC000691 NM_015964 NM_016140	54646	-	TSC_hg19_v1_chr16_-_67450360 NM_013304 U90653 BC021908	77564	-	AY963267|LRRC36|55282|leucine rich repeat containing 36##BC026156|LRRC36|55282|leucine rich repeat containing 36##NM_018296|LRRC36|55282|leucine rich repeat containing 36##BC018031|LRRC36|55282|leucine rich repeat containing 36##BC070103|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC094790|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK302748|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK302567|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC117335|KCTD19|146212|potassium channel tetramerisation domain containing 19##NM_001100915|KCTD19|146212|potassium channel tetramerisation domain containing 19##AK097481|KCTD19|146212|potassium channel tetramerisation domain containing 19##BC063501|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##NM_001129729|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##NM_001129731|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##BC054486|PLEKHG4|25894|pleckstrin homology domain containing, family G (with RhoGef domain) member 4##AK311487|LRRC36|55282|leucine rich repeat containing 36##NM_001161575|LRRC36|55282|leucine rich repeat containing 36##AK297329|LRRC36|55282|leucine rich repeat containing 36##AK309897|LRRC36|55282|leucine rich repeat containing 36##AK001866|LRRC36|55282|leucine rich repeat containing 36##AK292311|LRRC36|55282|leucine rich repeat containing 36##AY313780|LRRC36|55282|leucine rich repeat containing 36##AK301766|LRRC36|55282|leucine rich repeat containing 36##AF132972|TPPP3|51673|tubulin polymerization-promoting protein family member 3##AF078846|TPPP3|51673|tubulin polymerization-promoting protein family member 3##BC000691|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_015964|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_016140|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_013304|ZDHHC1|29800|zinc finger, DHHC-type containing 1##U90653|ZDHHC1|29800|zinc finger, DHHC-type containing 1##BC021908|ZDHHC1|29800|zinc finger, DHHC-type containing 1	2.994455	0.0	denovo_WM_7:43:0.680	denovo_WM_7:44:0.259	denovo_WM_7:58:0.430	denovo_WM_7:59:0.458	denovo_WM_7:73:0.203	denovo_WM_7:74:0.596
chr17	65464406	65464513	reg1009758.p2	5.002	+	BC007905 NM_012417 NM_181671	-90536	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-90871	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-91050	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	249591	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	357243	+	AK293224 TSC_hg19_v1_chr17_+_65822221	357758	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.998126	0.0	
chr19	35479888	35479990	reg1008066.p1	5.002	+	NM_175872 TSC_hg19_v1_chr19_-_35454952	-24981	-	AK304550 TSC_hg19_v1_chr19_-_35454915	-25046	-	NM_001099437 NM_001099438 NM_194325 TSC_hg19_v1_chr19_+_35417809 BC142996 BX640666 AK295515 AK290435	-62061	+	TSC_hg19_v1_chr19_+_35491226 AK074864 BC014077 NM_001136199 NM_020895	11325	+	AK074914 TSC_hg19_v1_chr19_+_35491368	11417	+	BC067122 NM_001037 NM_199037 L10338 AK295477 L16242 AK313279 AB528721 AY391842 BT019923	41718	+	NM_175872|ZNF792|126375|zinc finger protein 792##AK304550|ZNF792|126375|zinc finger protein 792##NM_001099437|ZNF30|90075|zinc finger protein 30##NM_001099438|ZNF30|90075|zinc finger protein 30##NM_194325|ZNF30|90075|zinc finger protein 30##BC142996|ZNF30|90075|zinc finger protein 30##BX640666|ZNF30|90075|zinc finger protein 30##AK295515|ZNF30|90075|zinc finger protein 30##AK290435|ZNF30|90075|zinc finger protein 30##AK074864|GRAMD1A|57655|GRAM domain containing 1A##BC014077|GRAMD1A|57655|GRAM domain containing 1A##NM_001136199|GRAMD1A|57655|GRAM domain containing 1A##NM_020895|GRAMD1A|57655|GRAM domain containing 1A##AK074914|GRAMD1A|57655|GRAM domain containing 1A##BC067122|SCN1B|6324|sodium channel, voltage-gated, type I, beta##NM_001037|SCN1B|6324|sodium channel, voltage-gated, type I, beta##NM_199037|SCN1B|6324|sodium channel, voltage-gated, type I, beta##L10338|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AK295477|SCN1B|6324|sodium channel, voltage-gated, type I, beta##L16242|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AK313279|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AY391842|SCN1B|6324|sodium channel, voltage-gated, type I, beta##BT019923|SCN1B|6324|sodium channel, voltage-gated, type I, beta	0.999175	0.0	denovo_WM_7:38:0.985
chr19	4246879	4247059	reg1001594.p1	5.002	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-17449	+	NM_133475	-63619	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	-64424	-	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	121	+	AK056268 NM_020209	31628	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	55435	-	BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2	0.0	0.01564	
chr2	225442259	225442404	reg1010441.p1	5.002	+	U58089 TSC_hg19_v1_chr2_-_225378353	-63995	-	AF052147 BC031844 TSC_hg19_v1_chr2_-_225370764	-71603	-	BC025754 NM_001122779 NM_024785 AK026399	-175601	-	AK299644 AK291151 AF064087 AF062537 TSC_hg19_v1_chr2_-_225449842	7452	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	7710	-	TSC_hg19_v1_chr2_-_225450056 BC039598	7744	-	U58089|CUL3|8452|cullin 3##AF052147|CUL3|8452|cullin 3##BC031844|CUL3|8452|cullin 3##BC025754|FAM124B|79843|family with sequence similarity 124B##NM_001122779|FAM124B|79843|family with sequence similarity 124B##NM_024785|FAM124B|79843|family with sequence similarity 124B##AK026399|FAM124B|79843|family with sequence similarity 124B##AK299644|CUL3|8452|cullin 3##AK291151|CUL3|8452|cullin 3##AF064087|CUL3|8452|cullin 3##AF062537|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3	0.99204	0.0	denovo_WM_7:-36:0.837
chr10	116285982	116286124	reg1008334.p1	5.001	+	CU677968 TSC_hg19_v1_chr10_-_116251632	-34446	-	BC024314 NM_001001936 NM_032550	-121539	-	AK123108 BC033212 AK027470 TSC_hg19_v1_chr10_-_116164254 AK294969 AK291712 AF474151	-121811	-	TSC_hg19_v1_chr10_-_116286631 AK298709 BC002448	549	-	TSC_hg19_v1_chr10_-_116286673 CR749819 NM_006720 AK098277	626	-	AK297344 TSC_hg19_v1_chr10_-_116392101	106047	-	BC024314|AFAP1L2|84632|actin filament associated protein 1-like 2##NM_001001936|AFAP1L2|84632|actin filament associated protein 1-like 2##NM_032550|AFAP1L2|84632|actin filament associated protein 1-like 2##AK123108|AFAP1L2|84632|actin filament associated protein 1-like 2##BC033212|AFAP1L2|84632|actin filament associated protein 1-like 2##AK294969|AFAP1L2|84632|actin filament associated protein 1-like 2##AK291712|AFAP1L2|84632|actin filament associated protein 1-like 2##AF474151|AFAP1L2|84632|actin filament associated protein 1-like 2##AK298709|ABLIM1|3983|actin binding LIM protein 1##BC002448|ABLIM1|3983|actin binding LIM protein 1##CR749819|ABLIM1|3983|actin binding LIM protein 1##NM_006720|ABLIM1|3983|actin binding LIM protein 1##AK098277|ABLIM1|3983|actin binding LIM protein 1##AK297344|ABLIM1|3983|actin binding LIM protein 1	0.0	0.0	
chr10	31665950	31666100	reg1009817.p1	5.001	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-55936	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-57892	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-58068	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	551699	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	551760	-	TSC_hg19_v1_chr10_-_32344938 AB462413	678907	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.999155	0.0	denovo_WM_7:0:0.310	denovo_WM_7:0:0.310	denovo_WM_7:1:0.310
chr17	47295510	47295690	reg1010356.p1	5.001	+	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-7523	+	NM_001198754	-7665	-	AB037886 NM_001135186 NM_016428	-8012	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	12543	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	143980	-	BC095460 TSC_hg19_v1_chr17_-_47492215	196615	-	BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##AB037886|ABI3|51225|ABI family, member 3##NM_001135186|ABI3|51225|ABI family, member 3##NM_016428|ABI3|51225|ABI family, member 3##BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin	0.0	0.0	
chr11	3056684	3056802	reg1008990.p2	5.000	+	TSC_hg19_v1_chr11_-_3013610 NM_005969 U77456 AK312599	-43144	-	AK316324 TSC_hg19_v1_chr11_-_3013560	-43188	-	TSC_hg19_v1_chr11_-_3013522 AK299515	-43218	-	BT009913 CU678270 DQ890773 AK308005 TSC_hg19_v1_chr11_-_3078625 AB208814 AF288206 AF288207 AK222614 AK296763 AK131221 AK096313 AK295371 AK298514 AK302644 BX647906 AK289432 BC002880 NM_001014437 NM_001194997 NM_001751 NM_139273	21895	-	AK301003 TSC_hg19_v1_chr11_-_3147850	91100	-	TSC_hg19_v1_chr11_-_3186504 BC032646 BC039579 AF392453 AL136918	129746	-	NM_005969|NAP1L4|4676|nucleosome assembly protein 1-like 4##U77456|NAP1L4|4676|nucleosome assembly protein 1-like 4##AK312599|NAP1L4|4676|nucleosome assembly protein 1-like 4##AK316324|NAP1L4|4676|nucleosome assembly protein 1-like 4##AK299515|NAP1L4|4676|nucleosome assembly protein 1-like 4##BT009913|CARS|833|cysteinyl-tRNA synthetase##DQ890773|CARS|833|cysteinyl-tRNA synthetase##AK308005|CARS|833|cysteinyl-tRNA synthetase##AB208814|CARS|833|cysteinyl-tRNA synthetase##AF288206|CARS|833|cysteinyl-tRNA synthetase##AF288207|CARS|833|cysteinyl-tRNA synthetase##AK222614|CARS|833|cysteinyl-tRNA synthetase##AK296763|CARS|833|cysteinyl-tRNA synthetase##AK131221|CARS|833|cysteinyl-tRNA synthetase##AK096313|CARS|833|cysteinyl-tRNA synthetase##AK295371|CARS|833|cysteinyl-tRNA synthetase##AK298514|CARS|833|cysteinyl-tRNA synthetase##AK302644|CARS|833|cysteinyl-tRNA synthetase##BX647906|CARS|833|cysteinyl-tRNA synthetase##AK289432|CARS|833|cysteinyl-tRNA synthetase##BC002880|CARS|833|cysteinyl-tRNA synthetase##NM_001014437|CARS|833|cysteinyl-tRNA synthetase##NM_001194997|CARS|833|cysteinyl-tRNA synthetase##NM_001751|CARS|833|cysteinyl-tRNA synthetase##NM_139273|CARS|833|cysteinyl-tRNA synthetase##AK301003|OSBPL5|114879|oxysterol binding protein-like 5##BC032646|OSBPL5|114879|oxysterol binding protein-like 5##BC039579|OSBPL5|114879|oxysterol binding protein-like 5##AF392453|OSBPL5|114879|oxysterol binding protein-like 5##AL136918|OSBPL5|114879|oxysterol binding protein-like 5	0.98024	0.0	denovo_WM_7:-17:0.938
chr1	155211230	155211383	reg1007046.p2	5.000	+	TSC_hg19_v1_chr1_-_155211049 AK298900 AK301879 NM_001171812 NM_000157	-248	-	K02920 AB527624 BC003356 D13286 AK301374 M19285 M22212 TSC_hg19_v1_chr1_-_155211041 AK300186 AK302000	-340	-	BC030240 BC000349 AK297653 TSC_hg19_v1_chr1_-_155197234	-14093	-	BC062626 AK311242 TSC_hg19_v1_chr1_-_155214419 AK312502 BX648487 AK300829 AK291911 AK300876 NM_001005741 NM_001005742 NM_001171811	3177	-	AB587342 EU446765 CU679147 CU691816 TSC_hg19_v1_chr1_-_155224733 BC040136 BC006493 BC007444 BC033707	13407	-	TSC_hg19_v1_chr1_-_155224954 BC017262	13660	-	AK298900|GBA|2629|glucosidase, beta, acid##AK301879|GBA|2629|glucosidase, beta, acid##NM_001171812|GBA|2629|glucosidase, beta, acid##NM_000157|GBA|2629|glucosidase, beta, acid##K02920|GBA|2629|glucosidase, beta, acid##BC003356|GBA|2629|glucosidase, beta, acid##D13286|GBA|2629|glucosidase, beta, acid##AK301374|GBA|2629|glucosidase, beta, acid##M19285|GBA|2629|glucosidase, beta, acid##AK300186|GBA|2629|glucosidase, beta, acid##AK302000|GBA|2629|glucosidase, beta, acid##BC030240|GBAP1|2630|glucosidase, beta, acid pseudogene 1##BC000349|GBAP1|2630|glucosidase, beta, acid pseudogene 1##AK297653|GBAP1|2630|glucosidase, beta, acid pseudogene 1##BC062626|GBAP1|2630|glucosidase, beta, acid pseudogene 1##AK311242|GBA|2629|glucosidase, beta, acid##AK312502|GBA|2629|glucosidase, beta, acid##BX648487|GBA|2629|glucosidase, beta, acid##AK300829|GBA|2629|glucosidase, beta, acid##AK291911|GBA|2629|glucosidase, beta, acid##AK300876|GBA|2629|glucosidase, beta, acid##NM_001005741|GBA|2629|glucosidase, beta, acid##NM_001005742|GBA|2629|glucosidase, beta, acid##NM_001171811|GBA|2629|glucosidase, beta, acid##EU446765|FAM189B|10712|family with sequence similarity 189, member B##BC040136|FAM189B|10712|family with sequence similarity 189, member B##BC006493|FAM189B|10712|family with sequence similarity 189, member B##BC007444|FAM189B|10712|family with sequence similarity 189, member B##BC033707|FAM189B|10712|family with sequence similarity 189, member B##BC017262|FAM189B|10712|family with sequence similarity 189, member B	0.011753	0.0	
chr1	89742453	89742557	reg1011376.p2	5.000	+	AY358953 AK090479 AF328727 AF430643 TSC_hg19_v1_chr1_-_89738544 BC031639 AF430642 NM_001134486 NM_052942	-3991	-	AK304245 AB527149 AF288814 AK131094 AL832576 BC070055 BC017889 AK312417 BC008421 NM_052941	-77934	-	AK096141 NM_207398	-100783	-	NM_198460 AK131356	86939	+	NM_001134476 TSC_hg19_v1_chr1_+_89990414	247910	+	TSC_hg19_v1_chr1_+_89990454 BC060782 BC030607	247971	+	AY358953|GBP5|115362|guanylate binding protein 5##AK090479|GBP5|115362|guanylate binding protein 5##AF328727|GBP5|115362|guanylate binding protein 5##AF430643|GBP5|115362|guanylate binding protein 5##BC031639|GBP5|115362|guanylate binding protein 5##AF430642|GBP5|115362|guanylate binding protein 5##NM_001134486|GBP5|115362|guanylate binding protein 5##NM_052942|GBP5|115362|guanylate binding protein 5##AK304245|GBP4|115361|guanylate binding protein 4##AF288814|GBP4|115361|guanylate binding protein 4##AK131094|GBP4|115361|guanylate binding protein 4##AL832576|GBP4|115361|guanylate binding protein 4##BC070055|GBP4|115361|guanylate binding protein 4##BC017889|GBP4|115361|guanylate binding protein 4##AK312417|GBP4|115361|guanylate binding protein 4##BC008421|GBP4|115361|guanylate binding protein 4##NM_052941|GBP4|115361|guanylate binding protein 4##AK096141|GBP7|388646|guanylate binding protein 7##NM_207398|GBP7|388646|guanylate binding protein 7##NM_198460|GBP6|163351|guanylate binding protein family, member 6##AK131356|GBP6|163351|guanylate binding protein family, member 6##NM_001134476|LRRC8B|23507|leucine rich repeat containing 8 family, member B##BC060782|LRRC8B|23507|leucine rich repeat containing 8 family, member B##BC030607|LRRC8B|23507|leucine rich repeat containing 8 family, member B	0.999777	0.040888	denovo_WM_7:-33:0.842
chr6	71434675	71434796	reg1013729.p1	5.000	+	TSC_hg19_v1_chr6_+_71377620 AK315579 BC028074 BC008672 AK303387 BC036123 AK023221 AY055003 AY055004 AK222711 AK290448 CU688386	-57080	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	-57212	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	-158110	+	AB075843 NM_080742	232028	-	NM_024576 TSC_hg19_v1_chr6_+_71998479	563751	+	TSC_hg19_v1_chr6_+_71998513 BC018688	563775	+	AK315579|SMAP1|60682|small ArfGAP 1##BC028074|SMAP1|60682|small ArfGAP 1##BC008672|SMAP1|60682|small ArfGAP 1##AK303387|SMAP1|60682|small ArfGAP 1##BC036123|SMAP1|60682|small ArfGAP 1##AK023221|SMAP1|60682|small ArfGAP 1##AY055003|SMAP1|60682|small ArfGAP 1##AY055004|SMAP1|60682|small ArfGAP 1##AK222711|SMAP1|60682|small ArfGAP 1##AK290448|SMAP1|60682|small ArfGAP 1##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1##BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##AB075843|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_080742|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1	1.983974	0.0	
chr2	130241182	130241362	reg1010244.p1	4.999	+	AK304326 BC096239 BC096240 BC099638 BC099639 NM_004807 AB006179 TSC_hg19_v1_chr2_-_129076443	-1164972	-	AK074376 TSC_hg19_v1_chr2_+_128928049	-1313225	+	TSC_hg19_v1_chr2_+_128848891 AF227905	-1392411	+	NM_032144 AL136727	495963	+	EF523384 NM_001099771 TSC_hg19_v1_chr2_-_130886919	645586	-	CU688330 AK297246 AK057609 NM_207310 BC067771 AK302804	661339	-	BC096239|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC096240|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099638|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##BC099639|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##NM_004807|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AB006179|HS6ST1|9394|heparan sulfate 6-O-sulfotransferase 1##AK074376|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##AF227905|UGGT1|56886|UDP-glucose glycoprotein glucosyltransferase 1##NM_032144|RAB6C|84084|RAB6C, member RAS oncogene family##AL136727|RAB6C|84084|RAB6C, member RAS oncogene family##EF523384|POTEF|728378|POTE ankyrin domain family, member F##NM_001099771|POTEF|728378|POTE ankyrin domain family, member F##AK297246|CCDC74B|91409|coiled-coil domain containing 74B##AK057609|CCDC74B|91409|coiled-coil domain containing 74B##NM_207310|CCDC74B|91409|coiled-coil domain containing 74B##BC067771|CCDC74B|91409|coiled-coil domain containing 74B##AK302804|CCDC74B|91409|coiled-coil domain containing 74B	0.0	0.0	
chr13	82151853	82152007	reg1006170.p1	4.998	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-1236866	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-1238888	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-2096375	+	TSC_hg19_v1_chr13_-_84456424 BC051738	2304495	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	2304570	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	4221509	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.983825	0.0	denovo_WM_7:45:0.454	denovo_WM_7:46:0.454
chr6	31800512	31800636	reg1009081.p1	4.998	+	TSC_hg19_v1_chr6_+_31795518 NM_005346 AK295398 AK303967 BC001876 BC063507 BC057397 BC018740 BC009322 CU679297 DQ896426 EU176434	-5014	+	CU679297 AB527245 DQ896426 EU176434 TSC_hg19_v1_chr6_+_31783660	-16976	+	TSC_hg19_v1_chr6_+_31783319 DQ409329 AK096017 AK225692 AK225699 AK291295 AK294182 AK295398 AK298056 AK298078 AK298098 AK301574 AK303980 AK304618 AK304652 AK301243 AB209818 BC002453	-17239	+	BC017660 TSC_hg19_v1_chr6_+_31802692 AK311989 BC066330 NM_001040437 NM_001040438 AJ249731 AJ249732 BC000706 BT007334	2110	+	TSC_hg19_v1_chr6_-_31830590 BT007206 CR456717 CR541916 CU674360 DQ890716 DQ892186 DQ893896 DQ895380 AB209011 BC011900 U84246	29997	-	TSC_hg19_v1_chr6_-_31830595 AK313006 AK290966 X78687 BC000722 AF040958 NM_000434	30076	-	NM_005346|HSPA1B|3304|heat shock 70kDa protein 1B##AK295398|HSPA1B|3304|heat shock 70kDa protein 1B##AK303967|HSPA1B|3304|heat shock 70kDa protein 1B##BC001876|HSPA1B|3304|heat shock 70kDa protein 1B##BC063507|HSPA1B|3304|heat shock 70kDa protein 1B##BC057397|HSPA1B|3304|heat shock 70kDa protein 1B##BC018740|HSPA1A|3303|heat shock 70kDa protein 1A##BC009322|HSPA1A|3303|heat shock 70kDa protein 1A##DQ896426|HSPA1B|3304|heat shock 70kDa protein 1B##EU176434|HSPA1A|3303|heat shock 70kDa protein 1A##DQ896426|HSPA1B|3304|heat shock 70kDa protein 1B##EU176434|HSPA1A|3303|heat shock 70kDa protein 1A##AK096017|HSPA1A|3303|heat shock 70kDa protein 1A##AK225692|HSPA1A|3303|heat shock 70kDa protein 1A##AK225699|HSPA1A|3303|heat shock 70kDa protein 1A##AK291295|HSPA1A|3303|heat shock 70kDa protein 1A##AK294182|HSPA1A|3303|heat shock 70kDa protein 1A##AK295398|HSPA1B|3304|heat shock 70kDa protein 1B##AK298056|HSPA1A|3303|heat shock 70kDa protein 1A##AK301574|HSPA1A|3303|heat shock 70kDa protein 1A##AK303980|HSPA1A|3303|heat shock 70kDa protein 1A##AK304618|HSPA1A|3303|heat shock 70kDa protein 1A##AK304652|HSPA1A|3303|heat shock 70kDa protein 1A##AK301243|HSPA1A|3303|heat shock 70kDa protein 1A##AB209818|HSPA1A|3303|heat shock 70kDa protein 1A##BC002453|HSPA1A|3303|heat shock 70kDa protein 1A##BC017660|C6orf48|50854|chromosome 6 open reading frame 48##AK311989|C6orf48|50854|chromosome 6 open reading frame 48##BC066330|C6orf48|50854|chromosome 6 open reading frame 48##NM_001040437|C6orf48|50854|chromosome 6 open reading frame 48##NM_001040438|C6orf48|50854|chromosome 6 open reading frame 48##AJ249731|C6orf48|50854|chromosome 6 open reading frame 48##AJ249732|C6orf48|50854|chromosome 6 open reading frame 48##BC000706|C6orf48|50854|chromosome 6 open reading frame 48##BT007334|C6orf48|50854|chromosome 6 open reading frame 48##BT007206|NEU1|4758|sialidase 1 (lysosomal sialidase)##CR456717|NEU1|4758|sialidase 1 (lysosomal sialidase)##CR541916|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ890716|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ892186|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ893896|NEU1|4758|sialidase 1 (lysosomal sialidase)##DQ895380|NEU1|4758|sialidase 1 (lysosomal sialidase)##AB209011|NEU1|4758|sialidase 1 (lysosomal sialidase)##BC011900|NEU1|4758|sialidase 1 (lysosomal sialidase)##U84246|NEU1|4758|sialidase 1 (lysosomal sialidase)##AK313006|NEU1|4758|sialidase 1 (lysosomal sialidase)##AK290966|NEU1|4758|sialidase 1 (lysosomal sialidase)##X78687|NEU1|4758|sialidase 1 (lysosomal sialidase)##BC000722|NEU1|4758|sialidase 1 (lysosomal sialidase)##AF040958|NEU1|4758|sialidase 1 (lysosomal sialidase)##NM_000434|NEU1|4758|sialidase 1 (lysosomal sialidase)	0.995747	0.0	
chr8	8141580	8141731	reg1006918.p2	4.998	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-55513	+	AK292586 NM_001193630	-357797	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-389451	+	TSC_hg19_v1_chr8_-_8175862 AF075060	34233	-	AK122582 NM_001080826	97567	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	418043	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	1.881351	0.0	denovo_WM_7:-12:0.924	denovo_WM_7:-27:0.926
chr16	56763949	56764063	reg1008350.p2	4.997	+	TSC_hg19_v1_chr16_+_56716381 AK311284 AK311373 NM_005952 BC032131 BC032338 BC018190 BC053882 BC029916 X76717 AB528765 S68956	-47591	+	BC008408 NM_005951 BC059780 X64177 BC146930 BC146934 BT007171 S68948	-60246	+	AB528657 S68954 BC035287 BC048334 BC005311 BC020757 NM_005950 TSC_hg19_v1_chr16_-_56701976	-62062	-	NM_014669 TSC_hg19_v1_chr16_+_56764040	25	+	TSC_hg19_v1_chr16_+_56764089 D42085 AF086282 BC034346 AK292262	79	+	NM_001242795 AK056637 TSC_hg19_v1_chr16_+_56815740	51729	+	NM_005952|MT1X|4501|metallothionein 1X##BC032131|MT1X|4501|metallothionein 1X##BC032338|MT1X|4501|metallothionein 1X##BC018190|MT1X|4501|metallothionein 1X##BC053882|MT1X|4501|metallothionein 1X##BC029916|MT1X|4501|metallothionein 1X##X76717|MT1X|4501|metallothionein 1X##S68956|MT1X|4501|metallothionein 1X##BC008408|MT1H|4496|metallothionein 1H##NM_005951|MT1H|4496|metallothionein 1H##BC059780|MT1H|4496|metallothionein 1H##X64177|MT1H|4496|metallothionein 1H##BC146930|MT1H|4496|metallothionein 1H##BC146934|MT1H|4496|metallothionein 1H##BT007171|MT1H|4496|metallothionein 1H##S68948|MT1H|4496|metallothionein 1H##S68954|MT1G|4495|metallothionein 1G##BC035287|MT1G|4495|metallothionein 1G##BC005311|MT1G|4495|metallothionein 1G##BC020757|MT1G|4495|metallothionein 1G##NM_005950|MT1G|4495|metallothionein 1G##NM_014669|NUP93|9688|nucleoporin 93kDa##D42085|NUP93|9688|nucleoporin 93kDa##AF086282|NUP93|9688|nucleoporin 93kDa##BC034346|NUP93|9688|nucleoporin 93kDa##AK292262|NUP93|9688|nucleoporin 93kDa##NM_001242795|NUP93|9688|nucleoporin 93kDa##AK056637|NUP93|9688|nucleoporin 93kDa	0.0	0.0	
chr9	6750783	6750923	reg1001613.p2	4.997	+	AK310439 NM_001146696	-29991	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-105226	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-337448	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	6814	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	7186	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1048862	-	AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123	0.0	0.0	
chr1	145772246	145772369	reg1008573.p1	4.996	+	TSC_hg19_v1_chr1_+_145727712 AK313100 AK298269 BC006496 BC006518 AF012281	-44588	+	NM_001201325 NM_001201326 NM_002614 TSC_hg19_v1_chr1_+_145727703	-44623	+	AF060981 BC014465 NM_007053 AK128370	-56720	-	BT006679 DQ890650 DQ893830 AB528816 TSC_hg19_v1_chr1_-_145827047 BC003187 AK316371 BC146880 AF132947 U78723 BC067816 AB097024 AB097025 AK223223 AK299995 AK302266 AY358966 AK021758 AK297145 NM_001097612 NM_001097613	54709	-	NM_001097616	111560	+	AF419617 NM_001101663	295937	-	AK313100|PDZK1|5174|PDZ domain containing 1##AK298269|PDZK1|5174|PDZ domain containing 1##BC006496|PDZK1|5174|PDZ domain containing 1##BC006518|PDZK1|5174|PDZ domain containing 1##AF012281|PDZK1|5174|PDZ domain containing 1##NM_001201325|PDZK1|5174|PDZ domain containing 1##NM_001201326|PDZK1|5174|PDZ domain containing 1##NM_002614|PDZK1|5174|PDZ domain containing 1##AF060981|CD160|11126|CD160 molecule##BC014465|CD160|11126|CD160 molecule##NM_007053|CD160|11126|CD160 molecule##AK128370|CD160|11126|CD160 molecule##BT006679|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##AK297145|GPR89A|653519|G protein-coupled receptor 89A##NM_001097612|GPR89A|653519|G protein-coupled receptor 89A##NM_001097613|GPR89A|653519|G protein-coupled receptor 89A##NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24	1.094574	0.0	denovo_WM_7:-17:0.236	denovo_WM_7:-19:0.536
chr11	8228315	8228447	reg1008375.p1	4.996	+	AM422214 AY326435 AK315379 AL832601 AK293933 AK296505 AY358475 BC022455 AY326436 TSC_hg19_v1_chr11_-_8190573 BX647514 NM_001135109 NM_001206671 NM_001206672 NM_024557	-37818	-	TSC_hg19_v1_chr11_+_8102754 NM_177972 U54644	-125582	+	NM_003320 U82467	-168202	+	BC069752 BC069793 M26682 NM_002315	56971	-	AK093251 AX748014 BC031231 NM_030906	387076	-	AK293193 TSC_hg19_v1_chr11_-_8615705	387322	-	AM422214|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AY326435|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AK315379|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AL832601|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AK293933|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AK296505|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AY358475|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##BC022455|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##AY326436|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##BX647514|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##NM_001135109|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##NM_001206671|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##NM_001206672|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##NM_024557|RIC3|79608|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)##NM_177972|TUB|7275|tubby homolog (mouse)##U54644|TUB|7275|tubby homolog (mouse)##NM_003320|TUB|7275|tubby homolog (mouse)##U82467|TUB|7275|tubby homolog (mouse)##BC069752|LMO1|4004|LIM domain only 1 (rhombotin 1)##BC069793|LMO1|4004|LIM domain only 1 (rhombotin 1)##M26682|LMO1|4004|LIM domain only 1 (rhombotin 1)##NM_002315|LMO1|4004|LIM domain only 1 (rhombotin 1)##AK093251|STK33|65975|serine/threonine kinase 33##BC031231|STK33|65975|serine/threonine kinase 33##NM_030906|STK33|65975|serine/threonine kinase 33##AK293193|STK33|65975|serine/threonine kinase 33	0.0	0.0	
chr11	92930574	92930680	reg1008286.p2	4.996	+	BC069163 NM_005959 U25341 AY521019	-227788	+	NM_001008781	-845366	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-2946217	+	TSC_hg19_v1_chr11_-_92930978 CU690400	360	-	TSC_hg19_v1_chr11_-_92931106 AY162216 NM_152313 BC047374	458	-	TSC_hg19_v1_chr11_+_93063782 NM_181645 BC017929	133216	+	BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##AY162216|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_152313|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##BC047374|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_181645|CCDC67|159989|coiled-coil domain containing 67##BC017929|CCDC67|159989|coiled-coil domain containing 67	0.0	0.0	
chr1	234980558	234980680	reg1009242.p2	4.996	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-84845	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-235373	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-236761	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	311470	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	311612	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	343944	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.997776	0.0	denovo_WM_7:14:0.238	denovo_WM_7:15:0.238	denovo_WM_7:16:0.238	denovo_WM_7:17:0.238
chr12	64249056	64249236	reg1010481.p2	4.996	+	TSC_hg19_v1_chr12_+_64238511 BC053903 NM_020762 BC029919	-10600	+	TSC_hg19_v1_chr12_+_64237847 BC065032	-11420	+	BX647105 BX647419 TSC_hg19_v1_chr12_+_64173925	-75211	+	BC071634 AK057111 BC036246 AK129933 NM_152440	366907	-	BC039369 NM_001099676 NM_001170633	535171	-	TSC_hg19_v1_chr12_+_64798240 NM_007235 AK308108 AK292884	549100	+	BC053903|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##NM_020762|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BC029919|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BX647105|TMEM5|10329|transmembrane protein 5##BX647419|TMEM5|10329|transmembrane protein 5##BC071634|C12orf66|144577|chromosome 12 open reading frame 66##AK057111|C12orf66|144577|chromosome 12 open reading frame 66##BC036246|C12orf66|144577|chromosome 12 open reading frame 66##AK129933|C12orf66|144577|chromosome 12 open reading frame 66##NM_152440|C12orf66|144577|chromosome 12 open reading frame 66##BC039369|C12orf56|115749|chromosome 12 open reading frame 56##NM_001099676|C12orf56|115749|chromosome 12 open reading frame 56##NM_001170633|C12orf56|115749|chromosome 12 open reading frame 56##NM_007235|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AK308108|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AK292884|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)	0.0	0.0	
chr16	71600231	71600400	reg1000606.p4	4.996	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-40222	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-77100	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-104127	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	10657	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	59782	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	148385	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	0.996117	0.0	
chr2	25634206	25634352	reg1011915.p2	4.996	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-68817	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-68916	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-68951	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	262122	-	AB385496 TSC_hg19_v1_chr2_-_26101159	466850	-	TSC_hg19_v1_chr2_-_26101174 AB084279	466894	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	1.22462	0.0	denovo_WM_7:-40:0.916
chr3	101232281	101232461	reg1000139.p2	4.996	+	AM392620 AM393440 TSC_hg19_v1_chr3_-_101232029 AK297356 BC129988 BC062674 BX537943 AL833577 AF199458 NM_001077203 NM_020654	-343	-	AF173155 AB593127 NM_016247 DQ980603 DQ980602	-192949	-	CU688850 EU832117 EU832211 AK025204 AL833204 BC030221 TSC_hg19_v1_chr3_-_100712327 NM_015429	-520081	-	TSC_hg19_v1_chr3_+_101280711 BC035967 AF226052 NM_017819 AK000439 AF086243 AF155111	48346	+	AK098760 TSC_hg19_v1_chr3_+_101293023	60634	+	TSC_hg19_v1_chr3_+_101293044 BC013916 CR627371 BC022001 AB037675 NM_020357 AK025551 AK222978 BC107796 AK314629 AB590038 DQ890799 DQ893953	60684	+	AM392620|SENP7|57337|SUMO1/sentrin specific peptidase 7##AM393440|SENP7|57337|SUMO1/sentrin specific peptidase 7##AK297356|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC129988|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC062674|SENP7|57337|SUMO1/sentrin specific peptidase 7##BX537943|SENP7|57337|SUMO1/sentrin specific peptidase 7##AL833577|SENP7|57337|SUMO1/sentrin specific peptidase 7##AF199458|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_001077203|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_020654|SENP7|57337|SUMO1/sentrin specific peptidase 7##AF173155|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##AB593127|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##NM_016247|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##EU832117|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##EU832211|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AK025204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AL833204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC030221|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##NM_015429|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC035967|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF226052|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##NM_017819|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK000439|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF086243|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF155111|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK098760|PCNP|57092|PEST proteolytic signal containing nuclear protein##BC013916|PCNP|57092|PEST proteolytic signal containing nuclear protein##CR627371|PCNP|57092|PEST proteolytic signal containing nuclear protein##BC022001|PCNP|57092|PEST proteolytic signal containing nuclear protein##AB037675|PCNP|57092|PEST proteolytic signal containing nuclear protein##NM_020357|PCNP|57092|PEST proteolytic signal containing nuclear protein##AK025551|PCNP|57092|PEST proteolytic signal containing nuclear protein##AK222978|PCNP|57092|PEST proteolytic signal containing nuclear protein##BC107796|PCNP|57092|PEST proteolytic signal containing nuclear protein##AK314629|PCNP|57092|PEST proteolytic signal containing nuclear protein##DQ890799|PCNP|57092|PEST proteolytic signal containing nuclear protein##DQ893953|PCNP|57092|PEST proteolytic signal containing nuclear protein	0.0	0.0	
chr3	172194719	172194857	reg1007441.p1	4.996	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	-28565	-	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-436451	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-437330	+	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	46390	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	234102	-	TSC_hg19_v1_chr3_+_172468557 BC070038 AK314581 AY376439 AK308391	273736	+	AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC070038|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK314581|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AY376439|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK308391|ECT2|1894|epithelial cell transforming sequence 2 oncogene	1.105697	0.0	denovo_WM_7:38:0.238	denovo_WM_7:39:0.238	denovo_WM_7:40:0.238	denovo_WM_7:41:0.239
chr4	26343281	26343406	reg1008171.p2	4.996	+	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-20661	+	TSC_hg19_v1_chr4_+_26322635 AK302230	-20707	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	-21034	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	148642	-	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	242337	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	519197	+	BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2	0.838042	0.0	denovo_WM_7:-84:0.256	denovo_WM_7:-89:0.297
chr6	21593915	21594095	reg1006313.p1	4.996	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1059282	+	CR749285 NM_001243076	-1189972	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-1191902	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	367	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	72654	+	BC015850 NM_000948	703724	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.0	
chr7	69243920	69244098	reg1007045.p2	4.996	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-179421	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-179680	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-180173	+	TSC_hg19_v1_chr7_+_70231164 AK296981	987196	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1353779	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2557769	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	1.105878	0.0	
chr11	47239429	47239549	reg1011308.p1	4.995	+	NM_000107 U18300 TSC_hg19_v1_chr11_+_47236524 AK313262 BC050455 AK091640 AX747106 BC000093 AB527602 AB107037 AB107038 AB107039 AB107040 BT007139 CU674030 DQ890719	-2900	+	BC007914 AF149825 TSC_hg19_v1_chr11_-_47207959 AF242530 AK300658 BC011889 NM_001184974 NM_016223	-31507	-	AK300968 AK000577 NM_001184975	-32061	-	AK311590 NM_001251934 NM_001251935 AK302132	30366	+	AK298439 TSC_hg19_v1_chr11_-_47270266	30733	-	DQ892669 DQ895913 BC003160 TSC_hg19_v1_chr11_-_47270357 X12548 AK298122 AK097626 AK300569 AK300931 AK301860 AK308512 BC093010 AK299382 AK300911 AK303894 AK311431 NM_001131064 NM_001610	30908	-	NM_000107|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##U18300|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK313262|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC050455|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK091640|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC000093|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107037|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107038|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107039|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107040|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BT007139|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##DQ890719|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC007914|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF149825|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF242530|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300658|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##BC011889|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184974|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_016223|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300968|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK000577|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184975|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK311590|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##NM_001251934|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##NM_001251935|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##AK302132|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##AK298439|ACP2|53|acid phosphatase 2, lysosomal##DQ892669|ACP2|53|acid phosphatase 2, lysosomal##DQ895913|ACP2|53|acid phosphatase 2, lysosomal##BC003160|ACP2|53|acid phosphatase 2, lysosomal##X12548|ACP2|53|acid phosphatase 2, lysosomal##AK298122|ACP2|53|acid phosphatase 2, lysosomal##AK300569|ACP2|53|acid phosphatase 2, lysosomal##AK300931|ACP2|53|acid phosphatase 2, lysosomal##AK301860|ACP2|53|acid phosphatase 2, lysosomal##AK308512|ACP2|53|acid phosphatase 2, lysosomal##BC093010|ACP2|53|acid phosphatase 2, lysosomal##AK299382|ACP2|53|acid phosphatase 2, lysosomal##AK300911|ACP2|53|acid phosphatase 2, lysosomal##AK303894|ACP2|53|acid phosphatase 2, lysosomal##AK311431|ACP2|53|acid phosphatase 2, lysosomal##NM_001131064|ACP2|53|acid phosphatase 2, lysosomal##NM_001610|ACP2|53|acid phosphatase 2, lysosomal	0.0	0.0	
chr19	6606750	6606864	reg1009731.p1	4.995	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-15649	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-15701	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-15775	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	63317	-	AF064090 NM_003807 NM_172014	63791	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	113849	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.996776	0.0	denovo_WM_7:0:0.238	denovo_WM_7:-1:0.238	denovo_WM_7:-2:0.238	denovo_WM_7:-3:0.238
chr20	32993690	32993815	reg1001941.p2	4.995	+	TSC_hg19_v1_chr20_+_32951078 NM_031483 AK297809 AK304090 AK315212 BC011571 AB056663	-42660	+	AK097610 NM_001161766	-94145	-	BT006697 CU679982 DQ890569 DQ891701 DQ893730 DQ895397 TSC_hg19_v1_chr20_-_32891162 M61832 M61831 BC010018 BC011606 AK300014 AK316180 AK290422 AK309204 NM_000687	-102608	-	TSC_hg19_v1_chr20_+_33104226 NM_014183 AF132750 BC002481 AF161511 AK294214 AF165516	110464	+	NM_181509	140939	+	TSC_hg19_v1_chr20_+_33146525 NM_032514 AF276658 BC015810 AL833855 AB528175 BT007452 DQ893641 DQ895536 AM392590	152834	+	NM_031483|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK297809|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK304090|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK315212|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##BC011571|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AB056663|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK097610|AHCY|191|adenosylhomocysteinase##NM_001161766|AHCY|191|adenosylhomocysteinase##BT006697|AHCY|191|adenosylhomocysteinase##DQ890569|AHCY|191|adenosylhomocysteinase##DQ891701|AHCY|191|adenosylhomocysteinase##DQ893730|AHCY|191|adenosylhomocysteinase##DQ895397|AHCY|191|adenosylhomocysteinase##M61832|AHCY|191|adenosylhomocysteinase##M61831|AHCY|191|adenosylhomocysteinase##BC010018|AHCY|191|adenosylhomocysteinase##BC011606|AHCY|191|adenosylhomocysteinase##AK300014|AHCY|191|adenosylhomocysteinase##AK316180|AHCY|191|adenosylhomocysteinase##AK290422|AHCY|191|adenosylhomocysteinase##AK309204|AHCY|191|adenosylhomocysteinase##NM_000687|AHCY|191|adenosylhomocysteinase##NM_014183|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF132750|DYNLRB1|83658|dynein, light chain, roadblock-type 1##BC002481|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF161511|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AK294214|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF165516|DYNLRB1|83658|dynein, light chain, roadblock-type 1##NM_181509|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##NM_032514|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AF276658|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BC015810|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AL833855|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BT007452|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ893641|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ895536|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AM392590|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha	0.999656	0.0	denovo_WM_7:86:0.842
chr6	128183464	128183617	reg1008967.p1	4.995	+	AK303850 BC062712 NM_001010905	-285222	+	NM_001012279	-343041	-	NM_014702	-403006	-	AK292046 AK097903 BC144034 BC130516 NM_001010923 NM_001164685	38660	-	AK124031 NM_001164687	56218	-	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	658116	-	AK303850|C6orf58|352999|chromosome 6 open reading frame 58##BC062712|C6orf58|352999|chromosome 6 open reading frame 58##NM_001010905|C6orf58|352999|chromosome 6 open reading frame 58##NM_001012279|C6orf174|387104|chromosome 6 open reading frame 174##NM_014702|KIAA0408|9729|KIAA0408##AK292046|THEMIS|387357|thymocyte selection associated##AK097903|THEMIS|387357|thymocyte selection associated##BC144034|THEMIS|387357|thymocyte selection associated##BC130516|THEMIS|387357|thymocyte selection associated##NM_001010923|THEMIS|387357|thymocyte selection associated##NM_001164685|THEMIS|387357|thymocyte selection associated##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K	0.996905	0.0	
chr8	42029152	42029225	reg1000137.p1	4.995	+	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	-18655	+	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	-119689	-	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-274878	-	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	35900	-	AK289387 AK290575 NM_000930 NM_033011 TSC_hg19_v1_chr8_-_42065195	36006	-	TSC_hg19_v1_chr8_+_42128819 NM_001190720 NM_001242778 NM_001556	99620	+	NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue##AK289387|PLAT|5327|plasminogen activator, tissue##AK290575|PLAT|5327|plasminogen activator, tissue##NM_000930|PLAT|5327|plasminogen activator, tissue##NM_033011|PLAT|5327|plasminogen activator, tissue##NM_001190720|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001242778|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001556|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	0.0	0.0	
chr17	38759349	38759472	reg1007194.p2	4.994	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-37692	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-101564	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-159591	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	44660	-	BC069196 TSC_hg19_v1_chr17_-_38804818	45386	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	61940	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	0.0	0.0	
chr7	70203930	70204110	reg1010160.p1	4.994	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1139432	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1139691	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1140184	+	TSC_hg19_v1_chr7_+_70231164 AK296981	27185	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	393768	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1597758	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	1.995374	0.0	denovo_WM_7:-3:0.321	denovo_WM_7:-4:0.259	denovo_WM_7:-21:0.247	denovo_WM_7:-22:0.309
chr12	28613530	28613633	reg1008951.p1	4.993	+	AY289196 NM_018318 AB587421	-203441	+	TSC_hg19_v1_chr12_+_28343404 BC035168	-270170	+	NM_002820 NM_198965	-488666	-	AL136843 TSC_hg19_v1_chr12_+_29302210 AK001324 AK314670 BC018460	688611	+	TSC_hg19_v1_chr12_+_29376598 BC022267 NM_018099 AK027756 AK129857 AK001927	763090	+	TSC_hg19_v1_chr12_-_29534081 BC064522	920494	-	AY289196|CCDC91|55297|coiled-coil domain containing 91##NM_018318|CCDC91|55297|coiled-coil domain containing 91##NM_002820|PTHLH|5744|parathyroid hormone-like hormone##NM_198965|PTHLH|5744|parathyroid hormone-like hormone##AL136843|FAR2|55711|fatty acyl CoA reductase 2##AK001324|FAR2|55711|fatty acyl CoA reductase 2##AK314670|FAR2|55711|fatty acyl CoA reductase 2##BC022267|FAR2|55711|fatty acyl CoA reductase 2##NM_018099|FAR2|55711|fatty acyl CoA reductase 2##AK027756|FAR2|55711|fatty acyl CoA reductase 2##AK129857|FAR2|55711|fatty acyl CoA reductase 2##AK001927|FAR2|55711|fatty acyl CoA reductase 2##BC064522|ERGIC2|51290|ERGIC and golgi 2	0.601945	0.0	denovo_WM_7:53:0.260
chr7	1182102	1182276	reg1010947.p2	4.993	+	TSC_hg19_v1_chr7_-_1177884 AF495721 BC006224 NM_001134395 NM_001134396 NM_032350	-4327	-	NM_001098201 AK289588 U63917 BC067849	-54436	+	NM_001039966 NM_001505 AF015257	-55713	+	BC016963 TSC_hg19_v1_chr7_-_1199799 AK027118 BC029558	17609	-	AK290170 TSC_hg19_v1_chr7_-_1199815	17625	-	TSC_hg19_v1_chr7_-_1199853 NM_182491	17650	-	AF495721|C7orf50|84310|chromosome 7 open reading frame 50##BC006224|C7orf50|84310|chromosome 7 open reading frame 50##NM_001134395|C7orf50|84310|chromosome 7 open reading frame 50##NM_001134396|C7orf50|84310|chromosome 7 open reading frame 50##NM_032350|C7orf50|84310|chromosome 7 open reading frame 50##NM_001098201|GPER|2852|G protein-coupled estrogen receptor 1##AK289588|GPER|2852|G protein-coupled estrogen receptor 1##U63917|GPER|2852|G protein-coupled estrogen receptor 1##BC067849|GPER|2852|G protein-coupled estrogen receptor 1##NM_001039966|GPER|2852|G protein-coupled estrogen receptor 1##NM_001505|GPER|2852|G protein-coupled estrogen receptor 1##AF015257|GPER|2852|G protein-coupled estrogen receptor 1##BC016963|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK027118|ZFAND2A|90637|zinc finger, AN1-type domain 2A##BC029558|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK290170|ZFAND2A|90637|zinc finger, AN1-type domain 2A##NM_182491|ZFAND2A|90637|zinc finger, AN1-type domain 2A	1.018629	0.124292	denovo_WM_7:99:0.984
chr12	132613361	132613504	reg1010085.p2	4.992	+	TSC_hg19_v1_chr12_+_132568851 BC015414 BC066974	-44577	+	TSC_hg19_v1_chr12_+_132568827 AK126212 AK097720 AK289710	-44618	+	TSC_hg19_v1_chr12_+_132434504 AK096311 BC064554 BC037208	-178900	+	CU691832 TSC_hg19_v1_chr12_-_132628865 BC040185 BC029279 AK097078 NM_175066 AB593157	15438	-	TSC_hg19_v1_chr12_+_132629001 BC001191 NM_024078	15561	+	TSC_hg19_v1_chr12_+_132629011 AK074489	15578	+	BC015414|EP400NL|347918|EP400 N-terminal like##BC066974|EP400NL|347918|EP400 N-terminal like##AK126212|EP400NL|347918|EP400 N-terminal like##AK097720|EP400NL|347918|EP400 N-terminal like##AK289710|EP400NL|347918|EP400 N-terminal like##AK096311|EP400|57634|E1A binding protein p400##BC064554|EP400|57634|E1A binding protein p400##BC037208|EP400|57634|E1A binding protein p400##BC040185|DDX51|317781|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51##BC029279|DDX51|317781|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51##AK097078|DDX51|317781|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51##NM_175066|DDX51|317781|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51##AB593157|DDX51|317781|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51##BC001191|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##NM_024078|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)	0.981413	0.0	denovo_WM_7:3:0.813
chr5	21551403	21551547	reg1010361.p2	4.992	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	-91827	+	TSC_hg19_v1_chr5_+_21459621 AK290693	-91866	+	AK295087 BC031051 NM_001167667 NM_004934	-1563153	-	TSC_hg19_v1_chr5_-_22212879 AK314800	661406	-	BC047608 TSC_hg19_v1_chr5_-_22853454	1301971	-	L33477 NM_004061	1302255	-	BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK314800|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##BC047608|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##L33477|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_004061|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)	0.0	0.0	
chr8	103001302	103001441	reg1000516.p2	4.992	+	NM_032041	-197933	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-198171	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-198188	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	135152	-	NM_001040630	135763	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	249802	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	0.0	0.0	
chr16	21938974	21939132	reg1009642.p1	4.991	+	AK316459 AK296301 AK303500 AK301703 AK294452 TSC_hg19_v1_chr16_-_21854901	-84225	-	BC009198 BC068999 TSC_hg19_v1_chr16_-_21831777 BC070157	-107293	-	AK093062 AX747895 NM_170664 BC040551 AK302733	-222736	+	NM_003366 AK307535 TSC_hg19_v1_chr16_+_21964618	25575	+	TSC_hg19_v1_chr16_+_21964679 J04973 BC003136	25632	+	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	25668	+	AK316459|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296301|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AK303500|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK301703|LOC613037|613037|nuclear pore complex interacting protein pseudogene##AK294452|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC009198|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC068999|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC070157|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##AK093062|OTOA|146183|otoancorin##NM_170664|OTOA|146183|otoancorin##BC040551|OTOA|146183|otoancorin##AK302733|OTOA|146183|otoancorin##NM_003366|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK307535|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##J04973|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##BC003136|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II	1.998278	0.0	denovo_WM_7:-17:0.310	denovo_WM_7:-18:0.248	denovo_WM_7:-35:0.259	denovo_WM_7:-36:0.321
chr17	73422531	73422711	reg1004935.p1	4.991	+	NM_002086 NM_203506 TSC_hg19_v1_chr17_-_73401791	-20818	-	TSC_hg19_v1_chr17_-_73401781 AK315565	-20842	-	TSC_hg19_v1_chr17_-_73401738 BC000631	-20887	-	NM_014738 TSC_hg19_v1_chr17_+_73452737 AK308160 BC042942 AK304819 D83779 BC045540	30117	+	AK316060 TSC_hg19_v1_chr17_+_73472617 AK294526 CR936809	49981	+	AK300354 NM_001142643 AK315936	83320	-	NM_002086|GRB2|2885|growth factor receptor-bound protein 2##NM_203506|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##NM_014738|KIAA0195|9772|KIAA0195##AK308160|KIAA0195|9772|KIAA0195##BC042942|KIAA0195|9772|KIAA0195##AK304819|KIAA0195|9772|KIAA0195##D83779|KIAA0195|9772|KIAA0195##BC045540|KIAA0195|9772|KIAA0195##AK316060|KIAA0195|9772|KIAA0195##AK294526|KIAA0195|9772|KIAA0195##CR936809|KIAA0195|9772|KIAA0195##AK300354|CASKIN2|57513|CASK interacting protein 2##NM_001142643|CASKIN2|57513|CASK interacting protein 2##AK315936|CASKIN2|57513|CASK interacting protein 2	0.0	0.058404	
chr10	26661940	26662120	reg1004113.p1	4.990	+	M74826 BC029517 M81882 TSC_hg19_v1_chr10_+_26505702 BC126327 BC126329 AB527954 HQ258311	-156365	+	NM_000818 NM_001134366	-156795	+	AK310494 TSC_hg19_v1_chr10_+_26223169 AF229172 AY101367 BC036079 BC045538	-438850	+	TSC_hg19_v1_chr10_+_26727269 NM_019043	65241	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	65287	+	TSC_hg19_v1_chr10_+_26727679 BC054516	65638	+	M74826|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC029517|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##M81882|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126327|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126329|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##HQ258311|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_000818|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_001134366|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##AK310494|MYO3A|53904|myosin IIIA##AF229172|MYO3A|53904|myosin IIIA##AY101367|MYO3A|53904|myosin IIIA##BC036079|MYO3A|53904|myosin IIIA##BC045538|MYO3A|53904|myosin IIIA##NM_019043|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	0.784613	0.017604	denovo_WM_7:-73:0.371
chr6_mcf_hap5	2546889	2547019	reg1007169.p1	4.990	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.994615	0.0	
chr12	122772484	122772599	reg1010509.p1	4.989	+	TSC_hg19_v1_chr12_-_122751044 NM_022916	-21486	-	AB527663 EU176253 TSC_hg19_v1_chr12_-_122750984 AL833244 BC016617 AF439857 AK026840 AK315545	-21543	-	BC046209 NM_019887 NM_138929	-60498	-	AF045652 AF045653 AY563000 TSC_hg19_v1_chr12_-_122839059	66496	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	134696	-	TSC_hg19_v1_chr12_-_122985404 BC065918	212886	-	NM_022916|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##EU176253|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC016617|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AF439857|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AK026840|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##AK315545|VPS33A|65082|vacuolar protein sorting 33 homolog A (S. cerevisiae)##BC046209|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_019887|DIABLO|56616|diablo, IAP-binding mitochondrial protein##NM_138929|DIABLO|56616|diablo, IAP-binding mitochondrial protein##AF045652|CLIP1|6249|CAP-GLY domain containing linker protein 1##AF045653|CLIP1|6249|CAP-GLY domain containing linker protein 1##AY563000|CLIP1|6249|CAP-GLY domain containing linker protein 1##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8	0.987196	0.0	denovo_WM_7:46:0.885
chr12	14392678	14392858	reg1005149.p1	4.989	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-259782	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-1043039	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-1043051	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	125867	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	145504	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	327841	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.904311	0.0	denovo_WM_7:74:0.676
chr14	86709594	86709727	reg1010035.p1	4.989	+	TSC_hg19_v1_chr14_+_85999692 AK297248	-710075	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	-713119	+	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	-713187	+	DQ891232 DQ894416 TSC_hg19_v1_chr14_-_88459468 BC036518	1749803	-	TSC_hg19_v1_chr14_-_88459523 D25283 D25284 AK296530 L23116 AK294040 NM_000153 NM_001201401	1749899	-	NM_001201402	1750348	-	BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##DQ891232|GALC|2581|galactosylceramidase##DQ894416|GALC|2581|galactosylceramidase##BC036518|GALC|2581|galactosylceramidase##D25283|GALC|2581|galactosylceramidase##D25284|GALC|2581|galactosylceramidase##AK296530|GALC|2581|galactosylceramidase##L23116|GALC|2581|galactosylceramidase##AK294040|GALC|2581|galactosylceramidase##NM_000153|GALC|2581|galactosylceramidase##NM_001201401|GALC|2581|galactosylceramidase##NM_001201402|GALC|2581|galactosylceramidase	0.0	0.0	
chr1	7727779	7727845	reg1012632.p1	4.989	+	TSC_hg19_v1_chr1_+_6845513 AB020640 BC151835 NM_001195563 NM_001242701 NM_015215 BC116457	-882321	+	TSC_hg19_v1_chr1_-_6761903 NM_018198	-965881	-	AF306695 TSC_hg19_v1_chr1_-_6761883	-965930	-	TSC_hg19_v1_chr1_+_7831355 BC005941 NM_004781 AK316558 BC007050 BC003570 U64520	103564	+	BC026102 TSC_hg19_v1_chr1_+_7844403 AK308303	116597	+	AB047686 BC146781 AL157954 NM_016831 BC144137 AK307760 AY493418 AB463163	117013	+	AB020640|CAMTA1|23261|calmodulin binding transcription activator 1##BC151835|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001195563|CAMTA1|23261|calmodulin binding transcription activator 1##NM_001242701|CAMTA1|23261|calmodulin binding transcription activator 1##NM_015215|CAMTA1|23261|calmodulin binding transcription activator 1##BC116457|CAMTA1|23261|calmodulin binding transcription activator 1##NM_018198|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##AF306695|DNAJC11|55735|DnaJ (Hsp40) homolog, subfamily C, member 11##BC005941|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##NM_004781|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##AK316558|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC007050|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC003570|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##U64520|VAMP3|9341|vesicle-associated membrane protein 3 (cellubrevin)##BC026102|PER3|8863|period homolog 3 (Drosophila)##AK308303|PER3|8863|period homolog 3 (Drosophila)##AB047686|PER3|8863|period homolog 3 (Drosophila)##BC146781|PER3|8863|period homolog 3 (Drosophila)##AL157954|PER3|8863|period homolog 3 (Drosophila)##NM_016831|PER3|8863|period homolog 3 (Drosophila)##BC144137|PER3|8863|period homolog 3 (Drosophila)##AK307760|PER3|8863|period homolog 3 (Drosophila)##AY493418|PER3|8863|period homolog 3 (Drosophila)	0.0	0.3737	CTCF.p2:18:0.248
chr4	2519934	2520114	reg1010980.p2	4.989	+	NM_001185009 BC031935	-48844	+	TSC_hg19_v1_chr4_+_2470846 AK312534 AK309509 U95140	-49148	+	TSC_hg19_v1_chr4_+_2470845 AB000468	-49180	+	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	107149	+	AK026176 NM_001161527	237726	-	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	238039	-	NM_001185009|RNF4|6047|ring finger protein 4##BC031935|RNF4|6047|ring finger protein 4##AK312534|RNF4|6047|ring finger protein 4##AK309509|RNF4|6047|ring finger protein 4##U95140|RNF4|6047|ring finger protein 4##AB000468|RNF4|6047|ring finger protein 4##AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2	1.97988	0.0	denovo_WM_7:18:0.208	denovo_WM_7:40:0.212
chr4	84073874	84073989	reg1009990.p1	4.989	+	TSC_hg19_v1_chr4_-_84035912 AK000140 NM_001130715 NM_016619	-38004	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	-38040	-	BC012205 NM_001130716	-42928	-	TSC_hg19_v1_chr4_-_84205924 DQ895928 EU176380 BC008804 AK023076	131984	-	TSC_hg19_v1_chr4_-_84205952 AK129583 AK300972 BC020728 AJ621061 NM_015697	132072	-	AJ627581 TSC_hg19_v1_chr4_-_84255962 AF084467 AM419200 AY948074 CU690802 AF152376 NM_001199830 AF165154 AK075400	182015	-	AK000140|PLAC8|51316|placenta-specific 8##NM_001130715|PLAC8|51316|placenta-specific 8##NM_016619|PLAC8|51316|placenta-specific 8##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8##BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##DQ895928|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##EU176380|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC008804|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK023076|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK129583|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK300972|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC020728|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AJ621061|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##NM_015697|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AF084467|HPSE|10855|heparanase##AM419200|HPSE|10855|heparanase##AY948074|HPSE|10855|heparanase##AF152376|HPSE|10855|heparanase##NM_001199830|HPSE|10855|heparanase##AF165154|HPSE|10855|heparanase##AK075400|HPSE|10855|heparanase	1.993103	0.0	denovo_WM_7:-62:0.221	denovo_WM_7:-84:0.221
chr5	137986108	137986241	reg1009453.p2	4.989	+	NM_004134	-74857	-	AK222758 TSC_hg19_v1_chr5_-_137911101 BC000478 BC024034 AK297897 AK293990 L11066 AK315177	-75086	-	BC030634 CU674234 TSC_hg19_v1_chr5_-_137911029 AB463063 EU446981 AK297795 L15189	-75155	-	TSC_hg19_v1_chr5_+_138089107 NM_001903 AK296708 AK300439 D14705	102920	+	TSC_hg19_v1_chr5_+_138089137 AK094151 D13866 BC000385 AK304267	102957	+	AK309790 TSC_hg19_v1_chr5_-_138211025 AB007876 BC028172 AK291064 AK297332	224839	-	NM_004134|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK222758|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC000478|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC024034|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK297897|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK293990|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##L11066|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK315177|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##BC030634|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##EU446981|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##AK297795|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##L15189|HSPA9|3313|heat shock 70kDa protein 9 (mortalin)##NM_001903|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK296708|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK300439|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##D14705|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK094151|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##D13866|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##BC000385|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK304267|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa##AK309790|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AB007876|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##BC028172|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK291064|LRRTM2|26045|leucine rich repeat transmembrane neuronal 2##AK297332|CTNNA1|1495|catenin (cadherin-associated protein), alpha 1, 102kDa	1.986755	0.0	denovo_WM_7:8:0.332	denovo_WM_7:9:0.332	denovo_WM_7:10:0.332	denovo_WM_7:-58:0.510
chr5	73553911	73554049	reg1009119.p2	4.989	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-444630	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-631995	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-692398	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	382483	-	AK096578 NM_003633	383268	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	427028	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	0.99775	0.0	denovo_WM_7:-37:0.816
chr7	92464772	92464921	reg1011998.p1	4.989	+	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	-1626	-	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	-2079	-	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-245148	-	AK313491 TSC_hg19_v1_chr7_-_92465884	1052	-	TSC_hg19_v1_chr7_-_92465935 NM_001145306	1088	-	AB095925 BC150249 AK122951 TSC_hg19_v1_chr7_-_92747292 BX647072 AF453311	282437	-	BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##X66365|CDK6|1021|cyclin-dependent kinase 6##BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##AK313491|CDK6|1021|cyclin-dependent kinase 6##NM_001145306|CDK6|1021|cyclin-dependent kinase 6##AB095925|SAMD9|54809|sterile alpha motif domain containing 9##BC150249|SAMD9|54809|sterile alpha motif domain containing 9##AK122951|SAMD9|54809|sterile alpha motif domain containing 9##BX647072|SAMD9|54809|sterile alpha motif domain containing 9##AF453311|SAMD9|54809|sterile alpha motif domain containing 9	0.05297	0.0	
chr9	130534493	130534587	reg1010447.p2	4.989	+	CU693348 BC027962 AY358440 AF124251 AK292041 BX647905 NM_001252334 NM_005489	-962	-	AK311510 NM_001142532 AK294386 NM_001142531	-9833	-	AK291393 TSC_hg19_v1_chr9_-_130517562 NM_001142534 AK056068 NM_001142533	-16973	-	BC032365 AK292718 AK096983 AK128287 NM_170600	6439	-	NM_001261 TSC_hg19_v1_chr9_+_130548312	13768	+	TSC_hg19_v1_chr9_+_130548326 X80230	13795	+	BC027962|SH2D3C|10044|SH2 domain containing 3C##AY358440|SH2D3C|10044|SH2 domain containing 3C##AF124251|SH2D3C|10044|SH2 domain containing 3C##AK292041|SH2D3C|10044|SH2 domain containing 3C##BX647905|SH2D3C|10044|SH2 domain containing 3C##NM_001252334|SH2D3C|10044|SH2 domain containing 3C##NM_005489|SH2D3C|10044|SH2 domain containing 3C##AK311510|SH2D3C|10044|SH2 domain containing 3C##NM_001142532|SH2D3C|10044|SH2 domain containing 3C##AK294386|SH2D3C|10044|SH2 domain containing 3C##NM_001142531|SH2D3C|10044|SH2 domain containing 3C##AK291393|SH2D3C|10044|SH2 domain containing 3C##NM_001142534|SH2D3C|10044|SH2 domain containing 3C##AK056068|SH2D3C|10044|SH2 domain containing 3C##NM_001142533|SH2D3C|10044|SH2 domain containing 3C##BC032365|SH2D3C|10044|SH2 domain containing 3C##AK292718|SH2D3C|10044|SH2 domain containing 3C##AK096983|SH2D3C|10044|SH2 domain containing 3C##AK128287|SH2D3C|10044|SH2 domain containing 3C##NM_170600|SH2D3C|10044|SH2 domain containing 3C##NM_001261|CDK9|1025|cyclin-dependent kinase 9##X80230|CDK9|1025|cyclin-dependent kinase 9	1.845839	0.0	denovo_WM_7:-74:0.205	denovo_WM_7:-78:0.503
chr2	182775357	182775441	reg1008831.p1	4.988	+	TSC_hg19_v1_chr2_+_182756689 BC052581 BC064499 BC028706 AK291745 BX647257 AB116937 AB385517 BX647967 AK304238 BX648888	-18606	+	TSC_hg19_v1_chr2_+_182756494 NM_001130445 NM_006751 AK093143 AX747951 AB067514	-18868	+	BC009046 TSC_hg19_v1_chr2_-_182545243 AB593068 AB593070 AB593071 AK313799 AB593069 D82347 HQ426678 JF290420 NM_002500	-230098	-	NM_001080545 AK129898 AF494535 BX647581 BC017943	75250	+	AK295657 AB384753 DQ892369 DQ893372 DQ895578 DQ896694 AF110237 NM_005019 BC022480 AF110240 AF110236 NM_001003683 U40370 AK294239	611885	-	TSC_hg19_v1_chr2_+_183580986 AL832632 AK027647 NM_018981 AY358577 AF490904 AK027696 BC070034 BC117299 BC126168 AF038503	805675	+	BC052581|SSFA2|6744|sperm specific antigen 2##BC064499|SSFA2|6744|sperm specific antigen 2##BC028706|SSFA2|6744|sperm specific antigen 2##AK291745|SSFA2|6744|sperm specific antigen 2##BX647257|SSFA2|6744|sperm specific antigen 2##AB116937|SSFA2|6744|sperm specific antigen 2##BX647967|SSFA2|6744|sperm specific antigen 2##AK304238|SSFA2|6744|sperm specific antigen 2##BX648888|SSFA2|6744|sperm specific antigen 2##NM_001130445|SSFA2|6744|sperm specific antigen 2##NM_006751|SSFA2|6744|sperm specific antigen 2##AB067514|SSFA2|6744|sperm specific antigen 2##BC009046|NEUROD1|4760|neurogenic differentiation 1##AB593068|NEUROD1|4760|neurogenic differentiation 1##AB593070|NEUROD1|4760|neurogenic differentiation 1##AB593071|NEUROD1|4760|neurogenic differentiation 1##AK313799|NEUROD1|4760|neurogenic differentiation 1##AB593069|NEUROD1|4760|neurogenic differentiation 1##D82347|NEUROD1|4760|neurogenic differentiation 1##HQ426678|CERKL|375298|ceramide kinase-like##JF290420|CERKL|375298|ceramide kinase-like##NM_002500|NEUROD1|4760|neurogenic differentiation 1##NM_001080545|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AK129898|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AF494535|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BX647581|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BC017943|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AK295657|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ892369|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ893372|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ895578|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ896694|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AF110237|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##NM_005019|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##BC022480|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AF110236|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##NM_001003683|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##U40370|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AK294239|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AL832632|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027647|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##NM_018981|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AY358577|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF490904|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027696|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC070034|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC117299|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC126168|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF038503|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10	0.202118	0.0	
chr6	6000870	6001050	reg1010156.p2	4.988	+	TSC_hg19_v1_chr6_+_5261758 NM_006567 AK223423 BC020239 BC021112 BC014273	-739270	+	TSC_hg19_v1_chr6_+_5261294 AK312454	-739698	+	TSC_hg19_v1_chr6_-_5261177 NM_001164840 NM_001164841 NM_020408	-739794	-	AJ420483 TSC_hg19_v1_chr6_-_6007133 BC002683 AF136631 AF114833 AK314095	6181	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	6737	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	319925	-	NM_006567|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK223423|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC020239|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC021112|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK312454|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##NM_001164840|LYRM4|57128|LYR motif containing 4##NM_001164841|LYRM4|57128|LYR motif containing 4##NM_020408|LYRM4|57128|LYR motif containing 4##AJ420483|NRN1|51299|neuritin 1##BC002683|NRN1|51299|neuritin 1##AF136631|NRN1|51299|neuritin 1##AF114833|NRN1|51299|neuritin 1##AK314095|NRN1|51299|neuritin 1##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide	1.44201	0.146383	denovo_WM_7:1:0.225	denovo_WM_7:16:0.225
chr2	201984491	201984621	reg1003695.p1	4.987	+	TSC_hg19_v1_chr2_+_201983419 AK289913 AK315208	-1084	+	AF015450 NM_001127183 AK308767 TSC_hg19_v1_chr2_+_201983395	-1225	+	AF009616 TSC_hg19_v1_chr2_+_201981056 AF010127 U97074 AK315924 BC001602 AB209600	-3515	+	NM_001202518 AK304585 AF041462	13166	+	AF041459 NM_001202515	20441	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	63064	+	AK289913|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315208|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF015450|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001127183|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK308767|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF009616|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF010127|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##U97074|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315924|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##BC001602|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AB209600|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202518|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK304585|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041462|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041459|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202515|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	0.985423	0.0	denovo_WM_7:14:0.476	denovo_WM_7:15:0.476
chr10	30818424	30818604	reg1004059.p1	4.986	+	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	-95393	+	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	-95575	+	TSC_hg19_v1_chr10_-_30638209 AB194709 AY364242 AK001348 AK225159 AK022188 NM_018109	-180281	-	AF139543 BC066294 NM_183058	100121	-	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	469938	-	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	502307	-	AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AB194709|MTPAP|55149|mitochondrial poly(A) polymerase##AY364242|MTPAP|55149|mitochondrial poly(A) polymerase##AK001348|MTPAP|55149|mitochondrial poly(A) polymerase##AK022188|MTPAP|55149|mitochondrial poly(A) polymerase##NM_018109|MTPAP|55149|mitochondrial poly(A) polymerase##AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438	0.0	0.0	
chr10	6183720	6183846	reg1010974.p1	4.986	+	TSC_hg19_v1_chr10_+_6131035 BC007871 BC039322 NM_001145547	-52612	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	-52784	+	TSC_hg19_v1_chr10_+_6130954 NM_032905	-52834	+	AK302518 TSC_hg19_v1_chr10_+_6186860 NM_001145443	3033	+	TSC_hg19_v1_chr10_+_6186890 AK131307	3101	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	3129	+	BC007871|RBM17|84991|RNA binding motif protein 17##BC039322|RBM17|84991|RNA binding motif protein 17##NM_001145547|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17##NM_032905|RBM17|84991|RNA binding motif protein 17##NM_001145443|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	0.986037	0.0	denovo_WM_7:-4:0.334	denovo_WM_7:-7:0.622
chr1	234908769	234908861	reg1002387.p5	4.986	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-13041	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-163569	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-164957	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	383274	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	383416	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	415748	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.339837	0.0	denovo_WM_7:35:0.201
chr14	38666641	38666769	reg1010162.p2	4.986	+	TSC_hg19_v1_chr14_-_38064444 NM_004496	-602241	-	TSC_hg19_v1_chr14_-_38064316 AK313785	-602389	-	AB463645 CU689794 AM392863 AM393239 AM393310 AM393369 TSC_hg19_v1_chr14_-_38064234 BC033890	-602499	-	TSC_hg19_v1_chr14_+_38677186 BX248780 NM_001049	10489	+	AK290868 TSC_hg19_v1_chr14_+_38678303 BC035618	11595	+	AB384936 DQ893328 DQ896644 TSC_hg19_v1_chr14_+_38678642	11914	+	NM_004496|FOXA1|3169|forkhead box A1##AK313785|FOXA1|3169|forkhead box A1##AM392863|FOXA1|3169|forkhead box A1##AM393239|FOXA1|3169|forkhead box A1##AM393310|FOXA1|3169|forkhead box A1##AM393369|FOXA1|3169|forkhead box A1##BC033890|FOXA1|3169|forkhead box A1##BX248780|SSTR1|6751|somatostatin receptor 1##NM_001049|SSTR1|6751|somatostatin receptor 1##AK290868|SSTR1|6751|somatostatin receptor 1##BC035618|SSTR1|6751|somatostatin receptor 1##DQ893328|SSTR1|6751|somatostatin receptor 1##DQ896644|SSTR1|6751|somatostatin receptor 1	0.9984	0.021513	denovo_WM_7:35:0.494	denovo_WM_7:36:0.494
chr15	96539804	96539945	reg1009753.p1	4.986	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-669555	-	NM_001159644 BC025708 BC111024 AK002037	-1640565	+	NM_001159643 NM_018349 AY656717 BC131527	-1698413	+	BC106083 NM_001145155 FM208183	329287	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	334103	+	AK316086 NM_001145156	335919	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.998486	0.0	denovo_WM_7:-14:0.457	denovo_WM_7:-15:0.457
chr2	48454878	48455023	reg1009055.p1	4.986	+	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	-322157	-	AK304140 AK315108 NM_025133	-339099	-	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	-444654	+	TSC_hg19_v1_chr2_+_48541851 NM_002158 BC063305	86868	+	AY134855 NM_001135629 NM_001193475 NM_152994 TSC_hg19_v1_chr2_+_48667936 AK172762 AK122900 AY092062 BC111059 AK307755 BC117279 BC143466 BC143463 BC040721	213022	+	AK309740 NM_001198593 TSC_hg19_v1_chr2_+_48757177	302171	+	BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##NM_002158|FOXN2|3344|forkhead box N2##BC063305|FOXN2|3344|forkhead box N2##AY134855|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001135629|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001193475|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_152994|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK172762|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK122900|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AY092062|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC111059|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK307755|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC117279|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143466|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143463|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC040721|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK309740|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##NM_001198593|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough	0.0	0.0	
chr3	82278694	82278862	reg1007675.p1	4.986	+	BC031255 TSC_hg19_v1_chr3_+_82035308	-243476	+	TSC_hg19_v1_chr3_-_81810971 NM_000158	-467836	-	TSC_hg19_v1_chr3_-_81810866 AB209731 BC012098	-467930	-	TSC_hg19_v1_chr3_+_85008139 AB646739 BC105999 NM_001167674 NM_001167675 AK295885 BC063484 AL834270	2729351	+	AF538973 NM_153184	3496853	+	TSC_hg19_v1_chr3_-_87040249 NM_016206	4761473	-	NM_000158|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB209731|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##BC012098|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB646739|CADM2|253559|cell adhesion molecule 2##BC105999|CADM2|253559|cell adhesion molecule 2##NM_001167674|CADM2|253559|cell adhesion molecule 2##NM_001167675|CADM2|253559|cell adhesion molecule 2##AK295885|CADM2|253559|cell adhesion molecule 2##AL834270|CADM2|253559|cell adhesion molecule 2##AF538973|CADM2|253559|cell adhesion molecule 2##NM_153184|CADM2|253559|cell adhesion molecule 2##NM_016206|VGLL3|389136|vestigial like 3 (Drosophila)	0.0	0.0	
chr6	27780898	27781066	reg1006450.p1	4.986	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	-3200	+	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	-5041	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	-5259	-	BC066232 BC066233 BC066234 BC066235 BC066236 BC066237 NM_021066 TSC_hg19_v1_chr6_-_27782556 BC133048 BC133050	1579	-	TSC_hg19_v1_chr6_+_27782799 BC066244 BC067485 BC067486 BC067487 BC067488 BC067489 NM_003521	1825	+	AK312028 BC017361 BC062345 AF086564 AB463742 BC148271 DQ892605 DQ895845 EU446976 BC120940 NM_021968	10903	+	BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC066232|HIST1H2AJ|8331|histone cluster 1, H2aj##BC066233|HIST1H2AJ|8331|histone cluster 1, H2aj##BC066234|HIST1H2AJ|8331|histone cluster 1, H2aj##BC066235|HIST1H2AJ|8331|histone cluster 1, H2aj##BC066236|HIST1H2AJ|8331|histone cluster 1, H2aj##BC066237|HIST1H2AJ|8331|histone cluster 1, H2aj##NM_021066|HIST1H2AJ|8331|histone cluster 1, H2aj##BC133048|HIST1H2AJ|8331|histone cluster 1, H2aj##BC133050|HIST1H2AJ|8331|histone cluster 1, H2aj##BC066244|HIST1H2BM|8342|histone cluster 1, H2bm##BC067485|HIST1H2BM|8342|histone cluster 1, H2bm##BC067486|HIST1H2BM|8342|histone cluster 1, H2bm##BC067487|HIST1H2BM|8342|histone cluster 1, H2bm##BC067488|HIST1H2BM|8342|histone cluster 1, H2bm##BC067489|HIST1H2BM|8342|histone cluster 1, H2bm##NM_003521|HIST1H2BM|8342|histone cluster 1, H2bm##AK312028|HIST1H4K|8362|histone cluster 1, H4k##BC017361|HIST1H4J|8363|histone cluster 1, H4j##BC148271|HIST1H4J|8363|histone cluster 1, H4j##DQ892605|HIST1H4F|8361|histone cluster 1, H4f##DQ895845|HIST1H4F|8361|histone cluster 1, H4f##EU446976|HIST1H4A|8359|histone cluster 1, H4a##NM_021968|HIST1H4J|8363|histone cluster 1, H4j	1.389978	0.0	denovo_WM_7:-31:0.403	denovo_WM_7:-46:0.456
chrX	11843262	11843411	reg1002490.p2	4.986	+	NM_006800 AK025642	-65589	+	NM_001193270 AK300814	-66619	+	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	-66993	+	AB002314 NM_014728 AK289694	313254	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	966161	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	966232	+	NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AB002314|FRMPD4|9758|FERM and PDZ domain containing 4##NM_014728|FRMPD4|9758|FERM and PDZ domain containing 4##AK289694|FRMPD4|9758|FERM and PDZ domain containing 4##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2	0.112819	0.0	
chr1	42284917	42285060	reg1007281.p1	4.985	+	BC034393 X55177 M65199 NM_001956	-334669	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-577152	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-577203	-	TSC_hg19_v1_chr1_-_42384357 BC040942	99354	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	99385	-	TSC_hg19_v1_chr1_-_42501606 BC046120	216641	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	1.071616	0.0	denovo_WM_7:10:0.322	denovo_WM_7:13:0.672
chr1	183556726	183556883	reg1008374.p2	4.984	+	TSC_hg19_v1_chr1_+_183441650 D87437 AB085674	-115134	+	AK297207 TSC_hg19_v1_chr1_+_183441641 AK299178 AK056035 AK091477 AX747010 BC036381 AK307394 AK074297	-115174	+	TSC_hg19_v1_chr1_+_183441464 NM_001174061 NM_173156 NM_201568 NM_201569	-115314	+	BT007439 AB590135 DQ893650 DQ895812 CU674784 AF527950 TSC_hg19_v1_chr1_-_183559595 AK296672 AK312666 AK298713	2754	-	TSC_hg19_v1_chr1_-_183559669 BC001606 NM_000433 NM_001190789 NM_001190794	2909	-	M32011 TSC_hg19_v1_chr1_-_183560049 NM_001127651	3228	-	D87437|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB085674|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK297207|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK299178|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK056035|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK091477|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC036381|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK307394|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK074297|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001174061|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_173156|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_201568|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_201569|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##BT007439|NCF2|4688|neutrophil cytosolic factor 2##DQ893650|NCF2|4688|neutrophil cytosolic factor 2##DQ895812|NCF2|4688|neutrophil cytosolic factor 2##AF527950|NCF2|4688|neutrophil cytosolic factor 2##AK296672|NCF2|4688|neutrophil cytosolic factor 2##AK312666|NCF2|4688|neutrophil cytosolic factor 2##AK298713|NCF2|4688|neutrophil cytosolic factor 2##BC001606|NCF2|4688|neutrophil cytosolic factor 2##NM_000433|NCF2|4688|neutrophil cytosolic factor 2##NM_001190789|NCF2|4688|neutrophil cytosolic factor 2##NM_001190794|NCF2|4688|neutrophil cytosolic factor 2##M32011|NCF2|4688|neutrophil cytosolic factor 2##NM_001127651|NCF2|4688|neutrophil cytosolic factor 2	1.990666	0.0	denovo_WM_7:-50:0.955	denovo_WM_7:-65:0.973
chr16	89626611	89626791	reg1008759.p1	4.984	+	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	-51887	+	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	-69770	-	AK293862 NM_001242885	-239161	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	364	+	TSC_hg19_v1_chr16_+_89627089 BC093063 AK026501 AK093246 AK130964 AK290893 AK294655 AK308545 BC066320 D28432 X64707 AK025405 AK127579 AK130963 AK297198 BC007345 BC004954 BC006179 BC063378 BC007805 BC013078 BC014167 BC027463 BC010994 BC000851 BC020804 NM_033251 BC007563	406	+	TSC_hg19_v1_chr16_+_89642221 AJ133798 NM_014427 NM_153636 BC064577 BC035334 CU690070 AB463543	15506	+	NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13##BC093063|RPL13|6137|ribosomal protein L13##AK026501|RPL13|6137|ribosomal protein L13##AK130964|RPL13|6137|ribosomal protein L13##AK290893|RPL13|6137|ribosomal protein L13##AK294655|RPL13|6137|ribosomal protein L13##AK308545|RPL13|6137|ribosomal protein L13##BC066320|RPL13|6137|ribosomal protein L13##D28432|RPL13|6137|ribosomal protein L13##X64707|RPL13|6137|ribosomal protein L13##AK025405|RPL13|6137|ribosomal protein L13##AK127579|RPL13|6137|ribosomal protein L13##AK130963|RPL13|6137|ribosomal protein L13##AK297198|RPL13|6137|ribosomal protein L13##BC007345|RPL13|6137|ribosomal protein L13##BC004954|RPL13|6137|ribosomal protein L13##BC006179|RPL13|6137|ribosomal protein L13##BC063378|RPL13|6137|ribosomal protein L13##BC007805|RPL13|6137|ribosomal protein L13##BC013078|RPL13|6137|ribosomal protein L13##BC014167|RPL13|6137|ribosomal protein L13##BC027463|RPL13|6137|ribosomal protein L13##BC010994|RPL13|6137|ribosomal protein L13##BC000851|RPL13|6137|ribosomal protein L13##BC020804|RPL13|6137|ribosomal protein L13##NM_033251|RPL13|6137|ribosomal protein L13##BC007563|RPL13|6137|ribosomal protein L13##AJ133798|CPNE7|27132|copine VII##NM_014427|CPNE7|27132|copine VII##NM_153636|CPNE7|27132|copine VII##BC064577|CPNE7|27132|copine VII##BC035334|CPNE7|27132|copine VII	0.611854	0.0	denovo_WM_7:-104:0.244	denovo_WM_7:-107:0.405
chr18	72356125	72356279	reg1007607.p2	4.984	+	NM_001146189 NM_001146190 NM_017757	-13284	+	TSC_hg19_v1_chr18_+_72265126 AK056288	-91071	+	TSC_hg19_v1_chr18_-_72265072 BC036588	-91142	-	TSC_hg19_v1_chr18_-_72920993 CU687330 CU689738	564799	-	TSC_hg19_v1_chr18_-_72921059 AK292880 BC078661 BC033780	564910	-	BC018081 NM_175907 TSC_hg19_v1_chr18_-_72921324	565103	-	NM_001146189|ZNF407|55628|zinc finger protein 407##NM_001146190|ZNF407|55628|zinc finger protein 407##NM_017757|ZNF407|55628|zinc finger protein 407##AK056288|ZNF407|55628|zinc finger protein 407##BC036588|LOC400657|400657|uncharacterized LOC400657##AK292880|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC078661|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC033780|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC018081|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##NM_175907|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2	0.992577	0.0	
chr5	94938780	94938918	reg1009729.p2	4.984	+	AK303855 TSC_hg19_v1_chr5_+_94890804 AK316253 NM_198150 AY358596 BC050392 BC015723 BC130329 BC144160 BC144161 BC080567 BC036047 AY875939 HQ258292	-47970	+	TSC_hg19_v1_chr5_-_94890682 BC009767 AK307531 BC030966 BC056893 AB002370 NM_014639	-48162	-	BC034772 NM_152548 AK058062	-211794	+	JF810884 NM_199243	17130	+	NM_001131066 BC048979 NM_001131065 NM_173362 BC035110	43683	+	AY027526 AK292338 AK310260 BC047333 AK093225 AX747999 BC032832 NM_031952	79837	-	AK303855|ARSK|153642|arylsulfatase family, member K##AK316253|ARSK|153642|arylsulfatase family, member K##NM_198150|ARSK|153642|arylsulfatase family, member K##AY358596|ARSK|153642|arylsulfatase family, member K##BC050392|ARSK|153642|arylsulfatase family, member K##BC130329|ARSK|153642|arylsulfatase family, member K##BC144160|ARSK|153642|arylsulfatase family, member K##BC144161|ARSK|153642|arylsulfatase family, member K##BC036047|ARSK|153642|arylsulfatase family, member K##AY875939|ARSK|153642|arylsulfatase family, member K##HQ258292|ARSK|153642|arylsulfatase family, member K##BC009767|TTC37|9652|tetratricopeptide repeat domain 37##AK307531|TTC37|9652|tetratricopeptide repeat domain 37##BC030966|TTC37|9652|tetratricopeptide repeat domain 37##BC056893|TTC37|9652|tetratricopeptide repeat domain 37##AB002370|TTC37|9652|tetratricopeptide repeat domain 37##NM_014639|TTC37|9652|tetratricopeptide repeat domain 37##BC034772|FAM81B|153643|family with sequence similarity 81, member B##NM_152548|FAM81B|153643|family with sequence similarity 81, member B##AK058062|FAM81B|153643|family with sequence similarity 81, member B##JF810884|GPR150|285601|G protein-coupled receptor 150##NM_199243|GPR150|285601|G protein-coupled receptor 150##NM_001131066|RFESD|317671|Rieske (Fe-S) domain containing##BC048979|RFESD|317671|Rieske (Fe-S) domain containing##NM_001131065|RFESD|317671|Rieske (Fe-S) domain containing##NM_173362|RFESD|317671|Rieske (Fe-S) domain containing##BC035110|RFESD|317671|Rieske (Fe-S) domain containing##AY027526|SPATA9|83890|spermatogenesis associated 9##AK292338|SPATA9|83890|spermatogenesis associated 9##AK310260|SPATA9|83890|spermatogenesis associated 9##BC047333|SPATA9|83890|spermatogenesis associated 9##AK093225|SPATA9|83890|spermatogenesis associated 9##BC032832|SPATA9|83890|spermatogenesis associated 9##NM_031952|SPATA9|83890|spermatogenesis associated 9	0.906979	0.0	denovo_WM_7:80:0.859
chr9	136651626	136651736	reg1007772.p1	4.984	+	BC136363 BC136364 BC144035 AK223402 TSC_hg19_v1_chr9_-_136605067 AF095735 AF095737 AK298348 AK316494 NM_007101	-46695	-	TSC_hg19_v1_chr9_-_136603475 AK291211 AF047004 AF047190 AJ223317 NM_001134707	-48203	-	NM_000787 Y00096 BC017174 X13255 X13256 DQ893630 EU176683 CU677847	-150173	+	BX640754 TSC_hg19_v1_chr9_-_136857447 AB587478 S76992 BC132965 BC132967 NM_001134398 NM_003371	205765	-	D26362 TSC_hg19_v1_chr9_-_136933121 BC010699 NM_007371	281512	-	TSC_hg19_v1_chr9_-_136933665 BC032124 AK299519	281945	-	BC136363|SARDH|1757|sarcosine dehydrogenase##BC136364|SARDH|1757|sarcosine dehydrogenase##BC144035|SARDH|1757|sarcosine dehydrogenase##AK223402|SARDH|1757|sarcosine dehydrogenase##AF095735|SARDH|1757|sarcosine dehydrogenase##AF095737|SARDH|1757|sarcosine dehydrogenase##AK298348|SARDH|1757|sarcosine dehydrogenase##AK316494|SARDH|1757|sarcosine dehydrogenase##NM_007101|SARDH|1757|sarcosine dehydrogenase##AK291211|SARDH|1757|sarcosine dehydrogenase##AF047004|SARDH|1757|sarcosine dehydrogenase##AF047190|SARDH|1757|sarcosine dehydrogenase##AJ223317|SARDH|1757|sarcosine dehydrogenase##NM_001134707|SARDH|1757|sarcosine dehydrogenase##NM_000787|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##Y00096|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BC017174|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13255|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13256|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##DQ893630|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##EU176683|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BX640754|VAV2|7410|vav 2 guanine nucleotide exchange factor##S76992|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132965|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132967|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_001134398|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_003371|VAV2|7410|vav 2 guanine nucleotide exchange factor##D26362|BRD3|8019|bromodomain containing 3##BC010699|BRD3|8019|bromodomain containing 3##NM_007371|BRD3|8019|bromodomain containing 3##BC032124|BRD3|8019|bromodomain containing 3##AK299519|BRD3|8019|bromodomain containing 3	0.0	0.0	
chrX	153601056	153601185	reg1010727.p1	4.984	+	TSC_hg19_v1_chrX_-_153599726 AB593010	-1398	-	TSC_hg19_v1_chrX_-_153599586 AB191259 AB371575 AB371577 AB371578 AB371579 AB191260 AB371574 AB371576 AB463042 AK090427	-1505	-	NM_001145934	-67712	+	X53416 TSC_hg19_v1_chrX_-_153602972	1830	-	TSC_hg19_v1_chrX_-_153603003 AK125630 GU727643 NM_001110556 NM_001456	1881	-	NM_000117 TSC_hg19_v1_chrX_+_153607623	6493	+	AB593010|FLNA|2316|filamin A, alpha##AB191259|FLNA|2316|filamin A, alpha##AB371575|FLNA|2316|filamin A, alpha##AB371577|FLNA|2316|filamin A, alpha##AB371578|FLNA|2316|filamin A, alpha##AB371579|FLNA|2316|filamin A, alpha##AB191260|FLNA|2316|filamin A, alpha##AB371574|FLNA|2316|filamin A, alpha##AB371576|FLNA|2316|filamin A, alpha##AK090427|FLNA|2316|filamin A, alpha##NM_001145934|TKTL1|8277|transketolase-like 1##X53416|FLNA|2316|filamin A, alpha##AK125630|FLNA|2316|filamin A, alpha##GU727643|FLNA|2316|filamin A, alpha##NM_001110556|FLNA|2316|filamin A, alpha##NM_001456|FLNA|2316|filamin A, alpha##NM_000117|EMD|2010|emerin	0.997727	0.0	denovo_WM_7:-15:0.554
chr17	46583203	46583363	reg1009607.p1	4.983	+	TSC_hg19_v1_chr17_-_46507604 BC039040	-75666	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	-75745	-	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-398131	+	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	24988	-	EU446481 BC074805 BC074806 X16665 NM_002145	39050	-	NM_002146 AK027609	68545	-	BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1##EU446481|HOXB2|3212|homeobox B2##BC074805|HOXB2|3212|homeobox B2##BC074806|HOXB2|3212|homeobox B2##X16665|HOXB2|3212|homeobox B2##NM_002145|HOXB2|3212|homeobox B2##NM_002146|HOXB3|3213|homeobox B3##AK027609|HOXB3|3213|homeobox B3	0.938072	0.0	denovo_WM_7:-3:0.461	denovo_WM_7:-5:0.459
chr18	10928971	10929096	reg1009525.p1	4.983	+	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-402936	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-402977	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	-403005	+	NM_022068	219727	-	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	760179	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	822482	+	CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	0.0	0.0	
chr18	21103747	21103893	reg1001582.p2	4.983	+	TSC_hg19_v1_chr18_+_21083474 NM_013326 AK057192 AK295246 AK296230 AK294169 BC008305 BC002950	-20346	+	TSC_hg19_v1_chr18_+_21033285 AF013591	-70516	+	TSC_hg19_v1_chr18_+_21033263 BC039729	-70550	+	TSC_hg19_v1_chr18_-_21166428 BC063302 AF002020	62588	-	TSC_hg19_v1_chr18_-_21166458 AK295715 NM_000271	62690	-	TSC_hg19_v1_chr18_-_21242592 CU688952 AK313667 AK057782 BC030622 NM_173505	138900	-	NM_013326|C18orf8|29919|chromosome 18 open reading frame 8##AK057192|C18orf8|29919|chromosome 18 open reading frame 8##AK295246|C18orf8|29919|chromosome 18 open reading frame 8##AK296230|C18orf8|29919|chromosome 18 open reading frame 8##AK294169|C18orf8|29919|chromosome 18 open reading frame 8##BC008305|C18orf8|29919|chromosome 18 open reading frame 8##BC002950|C18orf8|29919|chromosome 18 open reading frame 8##AF013591|RIOK3|8780|RIO kinase 3 (yeast)##BC039729|RIOK3|8780|RIO kinase 3 (yeast)##BC063302|NPC1|4864|Niemann-Pick disease, type C1##AF002020|NPC1|4864|Niemann-Pick disease, type C1##AK295715|NPC1|4864|Niemann-Pick disease, type C1##NM_000271|NPC1|4864|Niemann-Pick disease, type C1##AK313667|ANKRD29|147463|ankyrin repeat domain 29##AK057782|ANKRD29|147463|ankyrin repeat domain 29##BC030622|ANKRD29|147463|ankyrin repeat domain 29##NM_173505|ANKRD29|147463|ankyrin repeat domain 29	0.0	0.0	
chr5	118677348	118677525	reg1008902.p1	4.983	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-72919	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-72978	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-270271	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	14182	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	14302	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	110760	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.0	0.0	
chr5	43556085	43556180	reg1008735.p1	4.983	+	BC036867 AK303336 TSC_hg19_v1_chr5_-_43515205 AK056925 NM_198566	-40926	-	BC013351 BC063832 AK094078 TSC_hg19_v1_chr5_-_43483947 AK025310 AK225220 NM_022483 AK315466	-72168	-	AB590493 AF220210 CU686894 HM067700 BC062668 BC069532 AF266504 AF110384 AK312120 NM_148672	-143680	-	TSC_hg19_v1_chr5_-_43556944 DQ891110 EU176558	796	-	CU675095 TSC_hg19_v1_chr5_-_43556949	817	-	TSC_hg19_v1_chr5_-_43557180 AF013758 BC005295 AL136920 BC015937 AK308270 NM_006451 NM_182789	1033	-	BC036867|C5orf34|375444|chromosome 5 open reading frame 34##AK303336|C5orf34|375444|chromosome 5 open reading frame 34##AK056925|C5orf34|375444|chromosome 5 open reading frame 34##NM_198566|C5orf34|375444|chromosome 5 open reading frame 34##BC013351|C5orf28|64417|chromosome 5 open reading frame 28##BC063832|C5orf28|64417|chromosome 5 open reading frame 28##AK025310|C5orf28|64417|chromosome 5 open reading frame 28##AK225220|C5orf28|64417|chromosome 5 open reading frame 28##NM_022483|C5orf28|64417|chromosome 5 open reading frame 28##AK315466|C5orf28|64417|chromosome 5 open reading frame 28##AF220210|CCL28|56477|chemokine (C-C motif) ligand 28##HM067700|CCL28|56477|chemokine (C-C motif) ligand 28##BC062668|CCL28|56477|chemokine (C-C motif) ligand 28##BC069532|CCL28|56477|chemokine (C-C motif) ligand 28##AF266504|CCL28|56477|chemokine (C-C motif) ligand 28##AF110384|CCL28|56477|chemokine (C-C motif) ligand 28##AK312120|CCL28|56477|chemokine (C-C motif) ligand 28##NM_148672|CCL28|56477|chemokine (C-C motif) ligand 28##DQ891110|PAIP1|10605|poly(A) binding protein interacting protein 1##EU176558|PAIP1|10605|poly(A) binding protein interacting protein 1##AF013758|PAIP1|10605|poly(A) binding protein interacting protein 1##BC005295|PAIP1|10605|poly(A) binding protein interacting protein 1##AL136920|PAIP1|10605|poly(A) binding protein interacting protein 1##BC015937|PAIP1|10605|poly(A) binding protein interacting protein 1##AK308270|PAIP1|10605|poly(A) binding protein interacting protein 1##NM_006451|PAIP1|10605|poly(A) binding protein interacting protein 1##NM_182789|PAIP1|10605|poly(A) binding protein interacting protein 1	0.952192	0.0	denovo_WM_7:-18:0.884
chr9	127908738	127908911	reg1011514.p1	4.983	+	AB590983 TSC_hg19_v1_chr9_-_127905808 BC104030 BC104031 BC104032 AK098024 AK093983 AX748393 NM_001144877 NM_173690	-3033	-	TSC_hg19_v1_chr9_-_127703357 BC032853 U51587 NM_002077	-205485	-	TSC_hg19_v1_chr9_-_127703273 AK302445	-205563	-	AB385530 AF035158 BT019708 X92972 TSC_hg19_v1_chr9_-_127952023	43185	-	AK295752 TSC_hg19_v1_chr9_-_127952069 AK312332 BC006990 AK316527 AK295190 AK299087 NM_001123355 NM_001123369 NM_002721	43303	-	TSC_hg19_v1_chr9_+_127962821 BC065725 NM_001174152 NM_001174153 AL832249 BC047023 Z97074	54001	+	BC104030|SCAI|286205|suppressor of cancer cell invasion##BC104031|SCAI|286205|suppressor of cancer cell invasion##BC104032|SCAI|286205|suppressor of cancer cell invasion##AK098024|SCAI|286205|suppressor of cancer cell invasion##AK093983|SCAI|286205|suppressor of cancer cell invasion##NM_001144877|SCAI|286205|suppressor of cancer cell invasion##NM_173690|SCAI|286205|suppressor of cancer cell invasion##BC032853|GOLGA1|2800|golgin A1##U51587|GOLGA1|2800|golgin A1##NM_002077|GOLGA1|2800|golgin A1##AK302445|GOLGA1|2800|golgin A1##AF035158|PPP6C|5537|protein phosphatase 6, catalytic subunit##BT019708|PPP6C|5537|protein phosphatase 6, catalytic subunit##X92972|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295752|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK312332|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC006990|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK316527|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295190|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK299087|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123355|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123369|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_002721|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC065725|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_001174152|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_001174153|RABEPK|10244|Rab9 effector protein with kelch motifs##AL832249|RABEPK|10244|Rab9 effector protein with kelch motifs##BC047023|RABEPK|10244|Rab9 effector protein with kelch motifs##Z97074|RABEPK|10244|Rab9 effector protein with kelch motifs	0.996083	0.0	denovo_WM_7:-14:0.711	denovo_WM_7:-15:0.239
chr1	196920958	196921111	reg1011294.p1	4.982	+	BC022283 NM_005666 X64877 AX772812 CU692532 DQ891405 DQ894582	-8075	+	AK292752 NM_001201550 NM_001201551 NM_006684 X98337 AJ640130 BC074957	-63847	+	NM_002113 BC107771 AK311681 AK290830 BC016755 M65292 M65293 X56210 AB590260 DQ892762 DQ896007 X56209	-132113	+	AK314026 NM_030787 BC026282 AF295327 BC111773 AB590626	25695	+	M14057 AB527321 AK290560 NM_001994	115339	-	AF509326 AY099892 AY367065 AY971955 AY971956 AY971957 BC015396 TSC_hg19_v1_chr1_-_197115800 AK226178 AK125107 NM_001206846 NM_018136	194660	-	BC022283|CFHR2|3080|complement factor H-related 2##NM_005666|CFHR2|3080|complement factor H-related 2##X64877|CFHR2|3080|complement factor H-related 2##DQ891405|CFHR2|3080|complement factor H-related 2##DQ894582|CFHR2|3080|complement factor H-related 2##AK292752|CFHR4|10877|complement factor H-related 4##NM_001201550|CFHR4|10877|complement factor H-related 4##NM_001201551|CFHR4|10877|complement factor H-related 4##NM_006684|CFHR4|10877|complement factor H-related 4##X98337|CFHR4|10877|complement factor H-related 4##AJ640130|CFHR4|10877|complement factor H-related 4##BC074957|CFHR4|10877|complement factor H-related 4##NM_002113|CFHR1|3078|complement factor H-related 1##BC107771|CFHR1|3078|complement factor H-related 1##AK290830|CFHR1|3078|complement factor H-related 1##BC016755|CFHR1|3078|complement factor H-related 1##M65292|CFHR1|3078|complement factor H-related 1##M65293|CFHR1|3078|complement factor H-related 1##X56210|CFHR1|3078|complement factor H-related 1##DQ892762|CFHR1|3078|complement factor H-related 1##DQ896007|CFHR1|3078|complement factor H-related 1##X56209|CFHR1|3078|complement factor H-related 1##AK314026|CFHR5|81494|complement factor H-related 5##NM_030787|CFHR5|81494|complement factor H-related 5##BC026282|CFHR5|81494|complement factor H-related 5##AF295327|CFHR5|81494|complement factor H-related 5##BC111773|CFHR5|81494|complement factor H-related 5##M14057|F13B|2165|coagulation factor XIII, B polypeptide##AK290560|F13B|2165|coagulation factor XIII, B polypeptide##NM_001994|F13B|2165|coagulation factor XIII, B polypeptide##AF509326|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY099892|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY367065|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971955|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971956|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971957|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##BC015396|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK226178|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK125107|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_001206846|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_018136|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)	0.180053	0.0	
chr19	11160055	11160191	reg1008783.p2	4.982	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	-65247	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-88299	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-88373	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	39954	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	40009	+	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	40062	+	BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor	0.990042	0.0	denovo_WM_7:46:0.330	denovo_WM_7:47:0.330	denovo_WM_7:48:0.330
chr2	74400426	74400525	reg1010376.p2	4.982	+	AL122062 TSC_hg19_v1_chr2_-_74382411	-18094	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-25255	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	-25457	-	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	5432	-	AK057260 TSC_hg19_v1_chr2_-_74425749	25240	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	25262	+	BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	0.998088	0.0	
chr6	107453706	107453809	reg1010919.p1	4.982	+	BC131628 NM_001080450	-18122	-	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	-104285	+	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	-376260	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	326973	-	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	357671	+	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	691759	-	BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)	0.866977	0.966103	CTCF.p2:6:0.966	denovo_WM_7:-41:0.380	denovo_WM_7:-42:0.445
chr6	108582888	108583063	reg1008163.p2	4.982	+	TSC_hg19_v1_chr6_-_108582316 NM_003795 NM_152827	-590	-	TSC_hg19_v1_chr6_-_108582245 BC015179 BC014580 AK289476	-737	-	TSC_hg19_v1_chr6_-_108582217 BC008444	-781	-	TSC_hg19_v1_chr6_+_108616194 AF520418 BC018445 NM_145315	33164	+	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	298048	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	299100	+	NM_003795|SNX3|8724|sorting nexin 3##NM_152827|SNX3|8724|sorting nexin 3##BC015179|SNX3|8724|sorting nexin 3##BC014580|SNX3|8724|sorting nexin 3##AK289476|SNX3|8724|sorting nexin 3##BC008444|SNX3|8724|sorting nexin 3##AF520418|LACE1|246269|lactation elevated 1##BC018445|LACE1|246269|lactation elevated 1##NM_145315|LACE1|246269|lactation elevated 1##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3	0.998919	0.0	denovo_WM_7:24:0.794
chr21	35419244	35419424	reg1001949.p1	4.981	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-131242	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-228664	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-404479	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	26507	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	26595	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	317012	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.0	0.0	
chr3	57102822	57103000	reg1006627.p2	4.981	+	AY221117 NM_181727 BC126274 BC136498	-8408	+	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	-267000	-	AK293864 AB209661 NM_001128616	-293242	-	AF433662 AK302493 NM_001128615	10402	-	AF458067 TSC_hg19_v1_chr3_-_57199347	96422	-	AF494208 NM_017563 TSC_hg19_v1_chr3_-_57199413	96499	-	AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF458067|IL17RD|54756|interleukin 17 receptor D##AF494208|IL17RD|54756|interleukin 17 receptor D##NM_017563|IL17RD|54756|interleukin 17 receptor D	0.990001	0.0	denovo_WM_7:44:0.243	denovo_WM_7:45:0.243	denovo_WM_7:46:0.243	denovo_WM_7:47:0.243
chr8	61859199	61859364	reg1011849.p1	4.981	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-267879	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-267993	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-429531	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	341269	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	743065	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	767737	-	BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase	0.99897	0.0	denovo_WM_7:56:0.314	denovo_WM_7:57:0.314	denovo_WM_7:58:0.314
chr16	68018877	68019028	reg1010362.p2	4.980	+	AB590471 BC037243 AJ291679 AY358390 BC057789 AK057401 NM_001129758 NM_022357	-4546	-	AF047338 AF054505 AF054506 DQ892254 DQ895457 TSC_hg19_v1_chr16_-_68002543 AK293956 U55054 AK293906 BC021193 BC035480 NM_001145961 NM_001145962 NM_005072	-16423	-	AK299042 NM_001145964	-18214	-	AJ295149 NM_022355	14407	-	TSC_hg19_v1_chr16_-_68057115 BC024273	38156	-	TSC_hg19_v1_chr16_-_68057129 BC014517	38176	-	BC037243|DPEP3|64180|dipeptidase 3##AJ291679|DPEP3|64180|dipeptidase 3##AY358390|DPEP3|64180|dipeptidase 3##BC057789|DPEP3|64180|dipeptidase 3##AK057401|DPEP3|64180|dipeptidase 3##NM_001129758|DPEP3|64180|dipeptidase 3##NM_022357|DPEP3|64180|dipeptidase 3##AF047338|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AF054505|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AF054506|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##DQ892254|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##DQ895457|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK293956|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##U55054|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK293906|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC021193|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC035480|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145961|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145962|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_005072|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK299042|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145964|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AJ295149|DPEP2|64174|dipeptidase 2##NM_022355|DPEP2|64174|dipeptidase 2##BC024273|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28##BC014517|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	0.0	0.0	
chr19	18512738	18512877	reg1012924.p1	4.980	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	-4387	-	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	-15825	+	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	-61400	+	TSC_hg19_v1_chr19_+_18530163 NM_001009998 NM_032627	17320	+	TSC_hg19_v1_chr19_+_18530224 BC000274 AK098429	17418	+	TSC_hg19_v1_chr19_+_18530425 CU674122 AB464208	17633	+	BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##NM_001009998|SSBP4|170463|single stranded DNA binding protein 4##NM_032627|SSBP4|170463|single stranded DNA binding protein 4##BC000274|SSBP4|170463|single stranded DNA binding protein 4##AK098429|SSBP4|170463|single stranded DNA binding protein 4	0.081318	0.335559	CTCF.p2:-106:0.336
chr2	48548103	48548239	reg1010703.p1	4.980	+	TSC_hg19_v1_chr2_+_48541851 NM_002158 BC063305	-6353	+	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	-415378	-	AK304140 AK315108 NM_025133	-432320	-	AY134855 NM_001135629 NM_001193475 NM_152994 TSC_hg19_v1_chr2_+_48667936 AK172762 AK122900 AY092062 BC111059 AK307755 BC117279 BC143466 BC143463 BC040721	119801	+	AK309740 NM_001198593 TSC_hg19_v1_chr2_+_48757177	208950	+	TSC_hg19_v1_chr2_+_48757357 AK314464 NM_001198595 NM_006873 CR936807	209154	+	NM_002158|FOXN2|3344|forkhead box N2##BC063305|FOXN2|3344|forkhead box N2##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##AY134855|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001135629|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001193475|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_152994|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK172762|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK122900|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AY092062|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC111059|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK307755|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC117279|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143466|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143463|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC040721|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK309740|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##NM_001198593|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##AK314464|STON1|11037|stonin 1##NM_001198595|STON1|11037|stonin 1##NM_006873|STON1|11037|stonin 1##CR936807|STON1|11037|stonin 1	0.223168	0.0	denovo_WM_7:-20:0.207
chr2	65456232	65456316	reg1000727.p3	4.980	+	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-1339	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-1538	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-98933	-	TSC_hg19_v1_chr2_-_65593766 AK299079	137499	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	137624	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	202938	-	NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2	0.962001	0.0	denovo_WM_7:-48:0.837
chrX	115029127	115029270	reg1009706.p2	4.980	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-201330	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-232156	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-233592	+	BC003645 TSC_hg19_v1_chrX_-_115085443	56241	-	AK313927 NM_000686 X87723 U16957	272797	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	538569	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.256532	0.0	
chrX	129894808	129894926	reg1007530.p1	4.980	+	TSC_hg19_v1_chrX_+_129535955 BC003676 NM_016024 AK292855 BC105582 BC012345 AL050405 BC033750 BC063517 BC010036 BC040433 BC050707	-358914	+	AY288416 BC101166 BC101167 BC101168 AB529244 HQ258187 BC095502 BC126179 BC126181 NM_178471	-375402	-	TSC_hg19_v1_chrX_+_129473927 AK304649 AK297499 AK309433 AK296155 NM_003951 NM_022810 BC119666 BC119667 AF155809 AF155810 AF155811 AY358099	-420835	+	TSC_hg19_v1_chrX_-_130037184 BC108713 AL133207 AK289812 AK289837	142310	-	TSC_hg19_v1_chrX_-_130037207 AK000353 NM_006375 NM_182314	142339	-	AK128203 NM_144967 AK296748 AX721074	297405	+	BC003676|RBMX2|51634|RNA binding motif protein, X-linked 2##NM_016024|RBMX2|51634|RNA binding motif protein, X-linked 2##AK292855|RBMX2|51634|RNA binding motif protein, X-linked 2##BC105582|RBMX2|51634|RNA binding motif protein, X-linked 2##BC012345|RBMX2|51634|RNA binding motif protein, X-linked 2##AL050405|RBMX2|51634|RNA binding motif protein, X-linked 2##BC033750|RBMX2|51634|RNA binding motif protein, X-linked 2##BC063517|RBMX2|51634|RNA binding motif protein, X-linked 2##BC010036|RBMX2|51634|RNA binding motif protein, X-linked 2##BC040433|RBMX2|51634|RNA binding motif protein, X-linked 2##BC050707|RBMX2|51634|RNA binding motif protein, X-linked 2##AY288416|GPR119|139760|G protein-coupled receptor 119##BC101166|GPR119|139760|G protein-coupled receptor 119##BC101167|GPR119|139760|G protein-coupled receptor 119##BC101168|GPR119|139760|G protein-coupled receptor 119##HQ258187|GPR119|139760|G protein-coupled receptor 119##BC095502|GPR119|139760|G protein-coupled receptor 119##BC126179|GPR119|139760|G protein-coupled receptor 119##BC126181|GPR119|139760|G protein-coupled receptor 119##NM_178471|GPR119|139760|G protein-coupled receptor 119##AK297499|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK309433|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK296155|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_003951|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_022810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119666|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119667|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155809|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155811|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY358099|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC108713|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AL133207|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289812|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289837|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK000353|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_006375|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_182314|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK128203|ARHGAP36|158763|Rho GTPase activating protein 36##NM_144967|ARHGAP36|158763|Rho GTPase activating protein 36##AK296748|ARHGAP36|158763|Rho GTPase activating protein 36	2.987201	0.0	denovo_WM_7:-29:0.928	denovo_WM_7:-78:0.235	denovo_WM_7:-79:0.201	denovo_WM_7:-98:0.209	denovo_WM_7:-99:0.242
chr10	110363104	110363279	reg1011045.p2	4.979	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-1438815	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1904132	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3962146	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1320018	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1320086	-	NM_019903 AB209810 BC057285	1402590	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	1.952435	0.0	denovo_WM_7:27:0.844	denovo_WM_7:42:0.853
chr1	197730961	197731131	reg1011610.p1	4.979	+	AK000061 TSC_hg19_v1_chr1_-_197552357	-178714	-	NM_001193640 NM_201253 AK299368 AK289733 AK307844 AB208923 AF154671 AY043324 AY043325 BC136271 BC143726 AJ748821	-493609	+	BC132818 BC136600 AK128549 AY163816 NM_194314	-561393	-	TSC_hg19_v1_chr1_-_197744376 BC022561	13288	-	TSC_hg19_v1_chr1_-_197744396 BC063456	13350	-	TSC_hg19_v1_chr1_-_197744438 AK091207 AX746849 BC063877	13419	-	AK000061|DENND1B|163486|DENN/MADD domain containing 1B##NM_001193640|CRB1|23418|crumbs homolog 1 (Drosophila)##NM_201253|CRB1|23418|crumbs homolog 1 (Drosophila)##AK299368|CRB1|23418|crumbs homolog 1 (Drosophila)##AK289733|CRB1|23418|crumbs homolog 1 (Drosophila)##AK307844|CRB1|23418|crumbs homolog 1 (Drosophila)##AB208923|CRB1|23418|crumbs homolog 1 (Drosophila)##AF154671|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043324|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043325|CRB1|23418|crumbs homolog 1 (Drosophila)##BC136271|CRB1|23418|crumbs homolog 1 (Drosophila)##BC143726|CRB1|23418|crumbs homolog 1 (Drosophila)##AJ748821|CRB1|23418|crumbs homolog 1 (Drosophila)##BC132818|ZBTB41|360023|zinc finger and BTB domain containing 41##BC136600|ZBTB41|360023|zinc finger and BTB domain containing 41##AK128549|ZBTB41|360023|zinc finger and BTB domain containing 41##AY163816|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_194314|ZBTB41|360023|zinc finger and BTB domain containing 41##BC022561|DENND1B|163486|DENN/MADD domain containing 1B##BC063456|DENND1B|163486|DENN/MADD domain containing 1B##AK091207|DENND1B|163486|DENN/MADD domain containing 1B##BC063877|DENND1B|163486|DENN/MADD domain containing 1B	0.999147	0.0	denovo_WM_7:0:0.739
chr16	56390939	56391043	reg1010336.p2	4.979	+	AK056008 TSC_hg19_v1_chr16_+_56225314	-165681	+	NM_020988 NM_138736 TSC_hg19_v1_chr16_+_56225253	-165740	+	AK294334 NM_001190158	-401049	-	AF124145 TSC_hg19_v1_chr16_-_56459357	68338	-	TSC_hg19_v1_chr16_-_56459390 NM_001144 BC069197	68432	-	AJ001810 CR456919 AB590091 AM392991 AM393219 DQ892142 DQ895336 TSC_hg19_v1_chr16_-_56485242 BC001403 BX647665 NM_007006 AK312721 BX537360	94219	-	AK056008|GNAO1|2775|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O##NM_020988|GNAO1|2775|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O##NM_138736|GNAO1|2775|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O##AK294334|CES5A|221223|carboxylesterase 5A##NM_001190158|CES5A|221223|carboxylesterase 5A##AF124145|AMFR|267|autocrine motility factor receptor##NM_001144|AMFR|267|autocrine motility factor receptor##BC069197|AMFR|267|autocrine motility factor receptor##AJ001810|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##CR456919|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AM392991|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AM393219|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##DQ892142|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##DQ895336|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BC001403|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BX647665|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##NM_007006|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AK312721|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BX537360|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	1.916316	0.120884	denovo_WM_7:-13:0.689	denovo_WM_7:-50:0.674	denovo_WM_7:-52:0.215
chr3	176864358	176864523	reg1009784.p2	4.979	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-2287350	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-2705720	+	BC032555 NM_014932	-3748197	+	TSC_hg19_v1_chr3_-_176914267 BX648935	49810	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	50511	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	50619	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.999132	0.0	denovo_WM_7:-51:0.239	denovo_WM_7:-52:0.239	denovo_WM_7:-53:0.239	denovo_WM_7:-54:0.239
chr3	36934615	36934795	reg1009185.p1	4.979	+	NM_033403	-153354	-	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	-512653	+	BC017805 NM_198399 BC066651 BC036548	-1212246	+	TSC_hg19_v1_chr3_-_36986546 NM_014831	51865	-	AB385383 CU687938 TSC_hg19_v1_chr3_-_37034574	99866	-	TSC_hg19_v1_chr3_-_37034623 BC064696 AF059751 BC012624 AB018309 AY178832 NM_014805	99996	-	NM_033403|DCLK3|85443|doublecortin-like kinase 3##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1##BC064696|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AF059751|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##BC012624|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AB018309|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##AY178832|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1##NM_014805|EPM2AIP1|9852|EPM2A (laforin) interacting protein 1	0.483964	0.0	denovo_WM_7:74:0.443
chrY	1348570	1348722	reg1012238.p2	4.979	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-10932	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-67062	-	NM_000451 NM_006883 U89331	-813568	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	2937	+	BC035407 NM_002183	56862	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	112323	-	NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	0.991417	0.0	denovo_WM_7:32:0.253	denovo_WM_7:33:0.720
chr10	92986013	92986135	reg1010065.p1	4.978	+	TSC_hg19_v1_chr10_+_92980539 AL832496	-5540	+	TSC_hg19_v1_chr10_+_92980445 NM_032373	-5666	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	-63312	+	BC071762 TSC_hg19_v1_chr10_+_93170064	183984	+	TSC_hg19_v1_chr10_+_93170100 NM_173497 NM_182765 AK295723 AK094625 BC040187 EU832472 EU832551 BX537856	184107	+	AK299392 TSC_hg19_v1_chr10_-_93392761 BC012625	406687	-	AL832496|PCGF5|84333|polycomb group ring finger 5##NM_032373|PCGF5|84333|polycomb group ring finger 5##BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##NM_173497|HECTD2|143279|HECT domain containing 2##NM_182765|HECTD2|143279|HECT domain containing 2##AK295723|HECTD2|143279|HECT domain containing 2##AK094625|HECTD2|143279|HECT domain containing 2##BC040187|HECTD2|143279|HECT domain containing 2##EU832472|HECTD2|143279|HECT domain containing 2##EU832551|HECTD2|143279|HECT domain containing 2##BX537856|HECTD2|143279|HECT domain containing 2##AK299392|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C##BC012625|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C	0.997904	0.0	
chr12	33673546	33673639	reg1010161.p1	4.978	+	BC101024 BC101025 TSC_hg19_v1_chr12_-_33592705 AY198413 NM_198992	-80926	-	EU520483 EU520484 EU520485 EU520486 AB590796 HQ258660 TSC_hg19_v1_chr12_-_33049733 X97675 BC094762 BC126199 BC143966 BC143967 BC070083 NM_001005242 NM_004572	-623857	-	AF132939 CU677373 DQ893063 DQ896315 BC015625 TSC_hg19_v1_chr12_-_32908835 AK024057 AK026619 AK130935 NM_001040436	-764751	-	AJ312278 NM_032834	501623	+	TSC_hg19_v1_chr12_+_34175402 BC022336	501794	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	501881	+	BC101024|SYT10|341359|synaptotagmin X##BC101025|SYT10|341359|synaptotagmin X##AY198413|SYT10|341359|synaptotagmin X##NM_198992|SYT10|341359|synaptotagmin X##EU520483|PKP2|5318|plakophilin 2##EU520484|PKP2|5318|plakophilin 2##EU520485|PKP2|5318|plakophilin 2##EU520486|PKP2|5318|plakophilin 2##HQ258660|PKP2|5318|plakophilin 2##X97675|PKP2|5318|plakophilin 2##BC094762|PKP2|5318|plakophilin 2##BC126199|PKP2|5318|plakophilin 2##BC143966|PKP2|5318|plakophilin 2##BC143967|PKP2|5318|plakophilin 2##BC070083|PKP2|5318|plakophilin 2##NM_001005242|PKP2|5318|plakophilin 2##NM_004572|PKP2|5318|plakophilin 2##AF132939|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##DQ893063|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##DQ896315|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##BC015625|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK024057|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK026619|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK130935|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##NM_001040436|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)	0.992413	0.0	denovo_WM_7:25:0.784
chr1	45518455	45518632	reg1000395.p1	4.978	+	TSC_hg19_v1_chr1_+_45478442 AK293702	-40092	+	TSC_hg19_v1_chr1_+_45477917 AF104421 AF104422 AF104423 AF104424 AF104425 AF104426 AF104427 AF104428 AF104429 AF104430 AF104431 AF104432 AF104433 AF104434 AF104435 AF104436 AF104437 AF104438 AF104439 AF104440 AK295284 M14016 BX647308 AK225053 AK308996 DQ890688 DQ893870 AB529048 BT006737 CR456976 CR542057	-40617	+	TSC_hg19_v1_chr1_+_45477906 AK291877 AK309446 AK310208 AK309724 AK315878 BC001778	-40645	+	TSC_hg19_v1_chr1_-_45672278 AB040944 NM_020883	153708	-	TSC_hg19_v1_chr1_+_45769564 BC035497	251032	+	NM_032756 BC007293	274017	+	AK293702|UROD|7389|uroporphyrinogen decarboxylase##AF104421|UROD|7389|uroporphyrinogen decarboxylase##AF104422|UROD|7389|uroporphyrinogen decarboxylase##AF104423|UROD|7389|uroporphyrinogen decarboxylase##AF104424|UROD|7389|uroporphyrinogen decarboxylase##AF104425|UROD|7389|uroporphyrinogen decarboxylase##AF104426|UROD|7389|uroporphyrinogen decarboxylase##AF104427|UROD|7389|uroporphyrinogen decarboxylase##AF104428|UROD|7389|uroporphyrinogen decarboxylase##AF104429|UROD|7389|uroporphyrinogen decarboxylase##AF104430|UROD|7389|uroporphyrinogen decarboxylase##AF104431|UROD|7389|uroporphyrinogen decarboxylase##AF104432|UROD|7389|uroporphyrinogen decarboxylase##AF104433|UROD|7389|uroporphyrinogen decarboxylase##AF104434|UROD|7389|uroporphyrinogen decarboxylase##AF104435|UROD|7389|uroporphyrinogen decarboxylase##AF104436|UROD|7389|uroporphyrinogen decarboxylase##AF104437|UROD|7389|uroporphyrinogen decarboxylase##AF104438|UROD|7389|uroporphyrinogen decarboxylase##AF104439|UROD|7389|uroporphyrinogen decarboxylase##AF104440|UROD|7389|uroporphyrinogen decarboxylase##AK295284|UROD|7389|uroporphyrinogen decarboxylase##M14016|UROD|7389|uroporphyrinogen decarboxylase##BX647308|UROD|7389|uroporphyrinogen decarboxylase##AK225053|UROD|7389|uroporphyrinogen decarboxylase##AK308996|UROD|7389|uroporphyrinogen decarboxylase##DQ890688|UROD|7389|uroporphyrinogen decarboxylase##DQ893870|UROD|7389|uroporphyrinogen decarboxylase##BT006737|UROD|7389|uroporphyrinogen decarboxylase##CR456976|UROD|7389|uroporphyrinogen decarboxylase##CR542057|UROD|7389|uroporphyrinogen decarboxylase##AK291877|UROD|7389|uroporphyrinogen decarboxylase##AK309446|UROD|7389|uroporphyrinogen decarboxylase##AK310208|UROD|7389|uroporphyrinogen decarboxylase##AK309724|UROD|7389|uroporphyrinogen decarboxylase##AK315878|UROD|7389|uroporphyrinogen decarboxylase##BC001778|UROD|7389|uroporphyrinogen decarboxylase##AB040944|ZSWIM5|57643|zinc finger, SWIM-type containing 5##NM_020883|ZSWIM5|57643|zinc finger, SWIM-type containing 5##BC035497|LOC400752|400752|uncharacterized LOC400752##NM_032756|HPDL|84842|4-hydroxyphenylpyruvate dioxygenase-like##BC007293|HPDL|84842|4-hydroxyphenylpyruvate dioxygenase-like	1.039065	0.0	denovo_WM_7:-103:0.826
chr14	74036686	74036843	reg1004162.p1	4.978	+	TSC_hg19_v1_chr14_+_74035979 DQ893488 DQ896406 BC004436 BC006500 L40401 AY005822 CU678722	-767	+	AK001939 DQ082755 AK223635 NM_006821 BC006335 TSC_hg19_v1_chr14_+_74035788	-989	+	AK093515 AX748177 BC047590 NM_001220484 NM_203309	-11118	-	BC090945 NM_152331	21645	+	DQ082756 NM_001037162	46783	+	NM_001201366 NM_031427 AF542071 BC005343 AL833654 AK315392	74889	+	DQ893488|ACOT2|10965|acyl-CoA thioesterase 2##DQ896406|ACOT2|10965|acyl-CoA thioesterase 2##BC004436|ACOT2|10965|acyl-CoA thioesterase 2##BC006500|ACOT2|10965|acyl-CoA thioesterase 2##L40401|ACOT2|10965|acyl-CoA thioesterase 2##AY005822|ACOT2|10965|acyl-CoA thioesterase 2##AK001939|ACOT2|10965|acyl-CoA thioesterase 2##DQ082755|ACOT2|10965|acyl-CoA thioesterase 2##AK223635|ACOT2|10965|acyl-CoA thioesterase 2##NM_006821|ACOT2|10965|acyl-CoA thioesterase 2##BC006335|ACOT2|10965|acyl-CoA thioesterase 2##AK093515|HEATR4|399671|HEAT repeat containing 4##BC047590|HEATR4|399671|HEAT repeat containing 4##NM_001220484|HEATR4|399671|HEAT repeat containing 4##NM_203309|HEATR4|399671|HEAT repeat containing 4##BC090945|ACOT4|122970|acyl-CoA thioesterase 4##NM_152331|ACOT4|122970|acyl-CoA thioesterase 4##DQ082756|ACOT6|641372|acyl-CoA thioesterase 6##NM_001037162|ACOT6|641372|acyl-CoA thioesterase 6##NM_001201366|DNAL1|83544|dynein, axonemal, light chain 1##NM_031427|DNAL1|83544|dynein, axonemal, light chain 1##AF542071|DNAL1|83544|dynein, axonemal, light chain 1##BC005343|DNAL1|83544|dynein, axonemal, light chain 1##AL833654|DNAL1|83544|dynein, axonemal, light chain 1##AK315392|DNAL1|83544|dynein, axonemal, light chain 1	0.998759	0.0	denovo_WM_7:57:0.861
chr15	57440009	57440127	reg1011694.p1	4.978	+	TSC_hg19_v1_chr15_+_57210977 M83233	-229068	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-229166	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	-229200	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	71599	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	228649	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	444097	+	M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12##AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1	0.999655	0.0	denovo_WM_7:20:0.298	denovo_WM_7:21:0.298	denovo_WM_7:22:0.298
chr17	48782627	48782777	reg1009343.p2	4.978	+	TSC_hg19_v1_chr17_+_48712188 BC046126 NM_001144070 NM_003786 AF009670 Y17151 BC058907 AF085690 AF085691 AF085692 BC104952 BC137347 BC137348 AB208954 AF083552 AB010887 BC050370 AF104943 AB384796	-70493	+	TSC_hg19_v1_chr17_+_48638339 BC110995 AF124351 NM_018896 NM_198376 NM_198377 NM_198378 NM_198379 NM_198380 NM_198382 NM_198383 NM_198384 NM_198385 NM_198386 NM_198387 NM_198388 NM_198396 NM_198397	-144309	+	AK092731 TSC_hg19_v1_chr17_+_48624553 BC111029 AK025000 AK225189 AK291805 BC025255 NM_022827 BC065526 AK308616	-158144	+	AK314010 CR627413 TSC_hg19_v1_chr17_-_48785180 BC012978 EU164539 NM_052855	2441	-	TSC_hg19_v1_chr17_+_48796963 NM_006107 NM_016424 AK290540 AK225980 AK023672 BC047043 BC056409 BC002925 AK295983 DQ013876 AK001925	14291	+	AF147357 TSC_hg19_v1_chr17_+_48821111	38408	+	BC046126|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##NM_001144070|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##NM_003786|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF009670|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##Y17151|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC058907|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085690|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085691|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085692|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC104952|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC137347|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC137348|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AB208954|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF083552|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AB010887|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC050370|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF104943|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC110995|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##AF124351|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_018896|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198376|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198377|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198378|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198379|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198380|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198382|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198383|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198384|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198385|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198386|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198387|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198388|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198396|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198397|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##AK092731|SPATA20|64847|spermatogenesis associated 20##BC111029|SPATA20|64847|spermatogenesis associated 20##AK025000|SPATA20|64847|spermatogenesis associated 20##AK225189|SPATA20|64847|spermatogenesis associated 20##AK291805|SPATA20|64847|spermatogenesis associated 20##BC025255|SPATA20|64847|spermatogenesis associated 20##NM_022827|SPATA20|64847|spermatogenesis associated 20##BC065526|SPATA20|64847|spermatogenesis associated 20##AK308616|SPATA20|64847|spermatogenesis associated 20##AK314010|ANKRD40|91369|ankyrin repeat domain 40##CR627413|ANKRD40|91369|ankyrin repeat domain 40##BC012978|ANKRD40|91369|ankyrin repeat domain 40##EU164539|ANKRD40|91369|ankyrin repeat domain 40##NM_052855|ANKRD40|91369|ankyrin repeat domain 40##NM_006107|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##NM_016424|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK290540|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK225980|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK023672|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC047043|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC056409|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC002925|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK295983|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##DQ013876|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK001925|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AF147357|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)	0.996234	0.0	denovo_WM_7:87:0.835
chr8	37640504	37640645	reg1005618.p1	4.978	+	TSC_hg19_v1_chr8_+_37620162 AK291135 CR533532 EU831636 EU831720	-20398	+	TSC_hg19_v1_chr8_+_37620124 AL136616	-20452	+	NM_007198 TSC_hg19_v1_chr8_+_37620111 BC012334 AK021923	-20465	+	TSC_hg19_v1_chr8_+_37654400 AK027296 NM_032777	13825	+	TSC_hg19_v1_chr8_+_37654406 AB040964 BC146774 AY090637	13851	+	TSC_hg19_v1_chr8_+_37654778 AF378755 AB385479 AY181242	14208	+	AK291135|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##CR533532|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831636|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831720|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AL136616|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##NM_007198|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##BC012334|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK021923|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK027296|GPR124|25960|G protein-coupled receptor 124##NM_032777|GPR124|25960|G protein-coupled receptor 124##AB040964|GPR124|25960|G protein-coupled receptor 124##BC146774|GPR124|25960|G protein-coupled receptor 124##AY090637|GPR124|25960|G protein-coupled receptor 124##AF378755|GPR124|25960|G protein-coupled receptor 124##AY181242|GPR124|25960|G protein-coupled receptor 124	2.262417	0.0	denovo_WM_7:54:0.300	denovo_WM_7:55:0.243	denovo_WM_7:72:0.239	denovo_WM_7:73:0.297
chr8	65730661	65730727	reg1010692.p2	4.978	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	-19415	-	TSC_hg19_v1_chr8_+_65493611 AK091333	-237030	+	NM_152414 AK293979	-237836	+	TSC_hg19_v1_chr8_-_66546394 AK001373	815701	-	TSC_hg19_v1_chr8_-_66546404 AK304463	815712	-	TSC_hg19_v1_chr8_-_66546413 BC011607 BC018846 NM_018120	815738	-	BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1##BC011607|ARMC1|55156|armadillo repeat containing 1##BC018846|ARMC1|55156|armadillo repeat containing 1##NM_018120|ARMC1|55156|armadillo repeat containing 1	1.986166	0.0	denovo_WM_7:-45:0.275	denovo_WM_7:-46:0.231	denovo_WM_7:-64:0.221	denovo_WM_7:-65:0.265
chr13	108807959	108808084	reg1011114.p1	4.977	+	NM_001080396	-288562	-	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	-1587536	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	-1620672	-	NM_002312 X83441	59108	-	AK292419 AK314844 BC037491 NM_206937	59854	-	TSC_hg19_v1_chr13_-_108870697 BX648833 NM_001098268	62676	-	NM_001080396|FAM155A|728215|family with sequence similarity 155, member A##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##NM_002312|LIG4|3981|ligase IV, DNA, ATP-dependent##X83441|LIG4|3981|ligase IV, DNA, ATP-dependent##AK292419|LIG4|3981|ligase IV, DNA, ATP-dependent##AK314844|LIG4|3981|ligase IV, DNA, ATP-dependent##BC037491|LIG4|3981|ligase IV, DNA, ATP-dependent##NM_206937|LIG4|3981|ligase IV, DNA, ATP-dependent##BX648833|LIG4|3981|ligase IV, DNA, ATP-dependent##NM_001098268|LIG4|3981|ligase IV, DNA, ATP-dependent	0.0	0.99544	CTCF.p2:11:0.995
chr17	45402291	45402437	reg1010139.p2	4.977	+	TSC_hg19_v1_chr17_+_45401357 NM_001195192 NM_152347 BC036407 BC037876	-1032	+	BC044604 TSC_hg19_v1_chr17_+_45401141	-1223	+	TSC_hg19_v1_chr17_+_45331260 AK300424	-71106	+	TSC_hg19_v1_chr17_-_45569837 BC090855 BC067758	167480	-	NM_006310 TSC_hg19_v1_chr17_+_45608460	206089	+	TSC_hg19_v1_chr17_+_45608556 AK096709	206208	+	NM_001195192|C17orf57|124989|chromosome 17 open reading frame 57##NM_152347|C17orf57|124989|chromosome 17 open reading frame 57##BC036407|C17orf57|124989|chromosome 17 open reading frame 57##BC037876|C17orf57|124989|chromosome 17 open reading frame 57##BC044604|C17orf57|124989|chromosome 17 open reading frame 57##BC090855|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2##BC067758|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2##NM_006310|NPEPPS|9520|aminopeptidase puromycin sensitive##AK096709|NPEPPS|9520|aminopeptidase puromycin sensitive	0.864344	0.0	denovo_WM_7:39:0.586
chr17	62355391	62355520	reg1010528.p1	4.977	+	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	-14801	-	TSC_hg19_v1_chr17_-_62340645 BC036672	-14808	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	-14869	-	AF177201 CU679261 TSC_hg19_v1_chr17_-_62493178 AK307801 BC009194 NM_007215	137682	-	AB451257 AB451382 BT006943 DQ890687 DQ893774 AB384902 TSC_hg19_v1_chr17_-_62502320	146828	-	TSC_hg19_v1_chr17_-_62502393 BC016027 AB209919	146927	-	BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##AF177201|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AK307801|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##BC009194|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##NM_007215|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AB451257|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB451382|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BT006943|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ890687|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ893774|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BC016027|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB209919|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.993318	0.0	
chr8	50160568	50160712	reg1010769.p2	4.977	+	NM_001007176 BC017981 AJ276240	-175731	+	AB464227 CU677105 EU446862 TSC_hg19_v1_chr8_-_49833989 BC015895 BC014890 AK223368 AK312661 NM_003068	-326730	-	AK021829 BC025676 BC029586 AK316037 AK299659 AK307101 NM_001142857 NM_024593	-512847	-	AJ003030 NM_018967	663956	+	EU170240 AY877349 NM_144651	2561313	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	2650962	-	NM_001007176|C8orf22|492307|chromosome 8 open reading frame 22##BC017981|C8orf22|492307|chromosome 8 open reading frame 22##AJ276240|C8orf22|492307|chromosome 8 open reading frame 22##EU446862|SNAI2|6591|snail homolog 2 (Drosophila)##BC015895|SNAI2|6591|snail homolog 2 (Drosophila)##BC014890|SNAI2|6591|snail homolog 2 (Drosophila)##AK223368|SNAI2|6591|snail homolog 2 (Drosophila)##AK312661|SNAI2|6591|snail homolog 2 (Drosophila)##NM_003068|SNAI2|6591|snail homolog 2 (Drosophila)##AK021829|EFCAB1|79645|EF-hand calcium binding domain 1##BC025676|EFCAB1|79645|EF-hand calcium binding domain 1##BC029586|EFCAB1|79645|EF-hand calcium binding domain 1##AK316037|EFCAB1|79645|EF-hand calcium binding domain 1##AK299659|EFCAB1|79645|EF-hand calcium binding domain 1##AK307101|EFCAB1|79645|EF-hand calcium binding domain 1##NM_001142857|EFCAB1|79645|EF-hand calcium binding domain 1##NM_024593|EFCAB1|79645|EF-hand calcium binding domain 1##AJ003030|SNTG1|54212|syntrophin, gamma 1##NM_018967|SNTG1|54212|syntrophin, gamma 1##EU170240|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AY877349|PXDNL|137902|peroxidasin homolog (Drosophila)-like##NM_144651|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	0.0	0.0	
chr9	69148495	69148659	reg1009490.p2	4.977	+	TSC_hg19_v1_chr9_+_69065493 AK311167	-83039	+	TSC_hg19_v1_chr9_+_68726468 AK311167	-422075	+	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	-1221761	+	NM_001085476	53626	-	AF265442 BC069006 AK293173 NM_001085457	113977	-	AL136793 NM_001098805	233403	+	AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4	0.997098	0.0	denovo_WM_7:-28:0.911
chr5	125950985	125951098	reg1000940.p1	4.976	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-14409	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-20185	-	NM_001146322 AK303857	-150225	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	16374	+	NM_005573 BC052951	161274	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	161790	+	AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001146322|GRAMD3|65983|GRAM domain containing 3##AK303857|GRAMD3|65983|GRAM domain containing 3##BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1	0.0	0.0	
chr3	37855037	37855217	reg1012766.p2	4.975	+	TSC_hg19_v1_chr3_+_37493631 BC030198 D25303 NM_002207 L24158	-361373	+	NM_178339 NM_178342 AJ493604 AJ493603	-414113	+	TSC_hg19_v1_chr3_+_37284761 BC045543 NM_001172713 NM_002078 BC050444 AK290550 BC023648 AK300192 AK307429 AB209693 U41740 X82834	-570364	+	TSC_hg19_v1_chr3_+_37903656 AJ575644 AJ575645 NM_001008392 NM_005808 AY279532 AY364238	48539	+	TSC_hg19_v1_chr3_+_38032276 BC004300	177149	+	NM_015873	179950	+	BC030198|ITGA9|3680|integrin, alpha 9##D25303|ITGA9|3680|integrin, alpha 9##NM_002207|ITGA9|3680|integrin, alpha 9##L24158|ITGA9|3680|integrin, alpha 9##NM_178339|C3orf35|339883|chromosome 3 open reading frame 35##NM_178342|C3orf35|339883|chromosome 3 open reading frame 35##AJ493604|C3orf35|339883|chromosome 3 open reading frame 35##AJ493603|C3orf35|339883|chromosome 3 open reading frame 35##BC045543|GOLGA4|2803|golgin A4##NM_001172713|GOLGA4|2803|golgin A4##NM_002078|GOLGA4|2803|golgin A4##BC050444|GOLGA4|2803|golgin A4##AK290550|GOLGA4|2803|golgin A4##BC023648|GOLGA4|2803|golgin A4##AK300192|GOLGA4|2803|golgin A4##AK307429|GOLGA4|2803|golgin A4##AB209693|GOLGA4|2803|golgin A4##U41740|GOLGA4|2803|golgin A4##X82834|GOLGA4|2803|golgin A4##AJ575644|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##AJ575645|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##NM_001008392|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##NM_005808|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##AY279532|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##AY364238|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##BC004300|VILL|50853|villin-like##NM_015873|VILL|50853|villin-like	0.0	0.0	
chr2	198081620	198081763	reg1009991.p2	4.974	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-290247	-	BC137150 BC137151 AY358249 NM_213608	-406754	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-417278	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	93691	-	TSC_hg19_v1_chr2_-_198175459 BC063622	93782	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	93828	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.991601	0.0	denovo_WM_7:-18:0.958
chr4	40327514	40327638	reg1008228.p2	4.974	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-128935	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-269044	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-347983	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	9869	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	189008	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	190382	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.983947	0.184903	denovo_WM_7:-61:0.854
chr6	26385706	26385824	reg1011785.p1	4.974	+	NM_001197238 NM_001197239 NM_001197240 NM_006995 NM_181531 AK304744 AK289883 AK293526 AK298570 U90550 BC017497 NM_001197237 BC014021	-2373	+	AF257505 NM_001197246	-17360	+	NM_001197247 NM_001197249 NM_007047 TSC_hg19_v1_chr6_+_26365425 AK312847 AK290880 U90546 AK303600 NM_001197248 BC002832 BC020214 AK299417	-20313	+	AK291162 NM_001145008 NM_001145009 NM_007048 NM_194441 AK290193 AK295720 TSC_hg19_v1_chr6_+_26402502 BC118586 BC121800 AK299327 BC065567 U90552 AK298652 Y07827	16757	+	NM_001242803 NM_006994 NM_197974 AK291722 AK301553 AB209581 BC015815 AK223279 AK223301 U90548	54974	+	NM_001197234 NM_007049 NM_078476 TSC_hg19_v1_chr6_+_26458182 AK297098 NM_001197233 BC016661 AB209777 U90543	72425	+	NM_001197238|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197239|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197240|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_006995|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_181531|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK304744|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK289883|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK293526|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AK298570|BTN2A2|10385|butyrophilin, subfamily 2, member A2##U90550|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC017497|BTN2A2|10385|butyrophilin, subfamily 2, member A2##NM_001197237|BTN2A2|10385|butyrophilin, subfamily 2, member A2##BC014021|BTN2A2|10385|butyrophilin, subfamily 2, member A2##AF257505|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197246|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197247|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197249|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_007047|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK312847|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK290880|BTN3A2|11118|butyrophilin, subfamily 3, member A2##U90546|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK303600|BTN3A2|11118|butyrophilin, subfamily 3, member A2##NM_001197248|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC002832|BTN3A2|11118|butyrophilin, subfamily 3, member A2##BC020214|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK299417|BTN3A2|11118|butyrophilin, subfamily 3, member A2##AK291162|BTN3A1|11119|butyrophilin, subfamily 3, member A1##NM_001145008|BTN3A1|11119|butyrophilin, subfamily 3, member A1##NM_001145009|BTN3A1|11119|butyrophilin, subfamily 3, member A1##NM_007048|BTN3A1|11119|butyrophilin, subfamily 3, member A1##NM_194441|BTN3A1|11119|butyrophilin, subfamily 3, member A1##AK290193|BTN3A1|11119|butyrophilin, subfamily 3, member A1##AK295720|BTN3A1|11119|butyrophilin, subfamily 3, member A1##BC118586|BTN3A1|11119|butyrophilin, subfamily 3, member A1##BC121800|BTN3A1|11119|butyrophilin, subfamily 3, member A1##AK299327|BTN3A1|11119|butyrophilin, subfamily 3, member A1##BC065567|BTN3A1|11119|butyrophilin, subfamily 3, member A1##U90552|BTN3A1|11119|butyrophilin, subfamily 3, member A1##AK298652|BTN3A1|11119|butyrophilin, subfamily 3, member A1##Y07827|BTN3A1|11119|butyrophilin, subfamily 3, member A1##NM_001242803|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_006994|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_197974|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK291722|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK301553|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AB209581|BTN3A3|10384|butyrophilin, subfamily 3, member A3##BC015815|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK223279|BTN3A3|10384|butyrophilin, subfamily 3, member A3##AK223301|BTN3A3|10384|butyrophilin, subfamily 3, member A3##U90548|BTN3A3|10384|butyrophilin, subfamily 3, member A3##NM_001197234|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_007049|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_078476|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AK297098|BTN2A1|11120|butyrophilin, subfamily 2, member A1##NM_001197233|BTN2A1|11120|butyrophilin, subfamily 2, member A1##BC016661|BTN2A1|11120|butyrophilin, subfamily 2, member A1##AB209777|BTN2A1|11120|butyrophilin, subfamily 2, member A1##U90543|BTN2A1|11120|butyrophilin, subfamily 2, member A1	0.995644	0.0	denovo_WM_7:23:0.770
chr19	972572	972752	reg1005590.p1	4.973	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-46651	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-55269	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-59438	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	11672	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	27703	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	48396	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	0.956488	0.0	denovo_WM_7:-52:0.347	denovo_WM_7:-53:0.610
chr8	129252805	129252966	reg1000825.p2	4.973	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-446102	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-504395	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-504560	+	AB042405 NM_031415	1546248	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1699030	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1699121	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.0	0.0	
chr9	35776056	35776213	reg1005683.p1	4.973	+	DQ012170 BC071800 BC105274 NM_001044264	-21862	-	TSC_hg19_v1_chr9_+_35749334 D87447 BC001725	-26798	+	NM_001080496 TSC_hg19_v1_chr9_+_35749276 AK289566	-26853	+	AJ005282 NM_003995	16271	+	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	36066	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	38878	-	DQ012170|MSMP|692094|microseminoprotein, prostate associated##BC071800|MSMP|692094|microseminoprotein, prostate associated##BC105274|MSMP|692094|microseminoprotein, prostate associated##NM_001044264|MSMP|692094|microseminoprotein, prostate associated##D87447|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##BC001725|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##NM_001080496|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##AK289566|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##AJ005282|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##NM_003995|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2	0.0	0.0	
chrX	111373943	111374047	reg1010056.p2	4.973	+	AK128465 NM_001004308	-47743	+	AF054568 NM_012471	-47992	-	BC034811 NM_001195577	-248871	+	BC100785 BC100786 BC100787 AY217350 NM_178175 AK289946	549344	-	AB384557 AY987378 NM_001113490	692358	-	TSC_hg19_v1_chrX_-_112084116 AF286598 NM_133265 AK301573	710067	-	AK128465|ZCCHC16|340595|zinc finger, CCHC domain containing 16##NM_001004308|ZCCHC16|340595|zinc finger, CCHC domain containing 16##AF054568|TRPC5|7224|transient receptor potential cation channel, subfamily C, member 5##NM_012471|TRPC5|7224|transient receptor potential cation channel, subfamily C, member 5##BC034811|LOC100329135|100329135|uncharacterized LOC100329135##NM_001195577|LOC100329135|100329135|uncharacterized LOC100329135##BC100785|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##BC100786|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##BC100787|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AY217350|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##NM_178175|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AK289946|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AY987378|AMOT|154796|angiomotin##NM_001113490|AMOT|154796|angiomotin##AF286598|AMOT|154796|angiomotin##NM_133265|AMOT|154796|angiomotin##AK301573|AMOT|154796|angiomotin	0.99568	0.0	denovo_WM_7:32:0.249	denovo_WM_7:33:0.249	denovo_WM_7:34:0.249	denovo_WM_7:35:0.249
chr13	27751098	27751221	reg1007374.p1	4.972	+	TSC_hg19_v1_chr13_-_27746003 BC026072 NM_182488	-5073	-	DQ894074 AF022789 TSC_hg19_v1_chr13_-_27745948 AK289685	-5298	-	AK312602 AK294378 AK311107 AK307756 AK290220 NM_005288 TSC_hg19_v1_chr13_-_27334929	-416306	-	TSC_hg19_v1_chr13_+_27825693 D28406 NM_000982 AK130968 AK311795 BC070185 BC070323 BC070330 BC104667 BX647669 AY320407 U25789 BC104478 L25348 U14967 BC070184 BC001603	74583	+	AY439004 NM_206827	93304	+	TSC_hg19_v1_chr13_+_27844966 HQ258126	93848	+	BC026072|USP12|219333|ubiquitin specific peptidase 12##NM_182488|USP12|219333|ubiquitin specific peptidase 12##DQ894074|USP12|219333|ubiquitin specific peptidase 12##AF022789|USP12|219333|ubiquitin specific peptidase 12##AK289685|USP12|219333|ubiquitin specific peptidase 12##AK312602|GPR12|2835|G protein-coupled receptor 12##AK294378|GPR12|2835|G protein-coupled receptor 12##AK311107|GPR12|2835|G protein-coupled receptor 12##AK307756|GPR12|2835|G protein-coupled receptor 12##AK290220|GPR12|2835|G protein-coupled receptor 12##NM_005288|GPR12|2835|G protein-coupled receptor 12##D28406|RPL21|6144|ribosomal protein L21##NM_000982|RPL21|6144|ribosomal protein L21##AK130968|RPL21|6144|ribosomal protein L21##AK311795|RPL21|6144|ribosomal protein L21##BC070185|RPL21|6144|ribosomal protein L21##BC070323|RPL21|6144|ribosomal protein L21##BC070330|RPL21|6144|ribosomal protein L21##BC104667|RPL21|6144|ribosomal protein L21##BX647669|RPL21|6144|ribosomal protein L21##U25789|RPL21|6144|ribosomal protein L21##BC104478|RPL21|6144|ribosomal protein L21##U14967|RPL21|6144|ribosomal protein L21##BC070184|RPL21|6144|ribosomal protein L21##BC001603|RPL21|6144|ribosomal protein L21##AY439004|RASL11A|387496|RAS-like, family 11, member A##NM_206827|RASL11A|387496|RAS-like, family 11, member A##HQ258126|RASL11A|387496|RAS-like, family 11, member A	0.995937	0.0	
chr3	133280631	133280733	reg1005865.p1	4.972	+	NM_003571 BC113518 BC113520 HQ258421 U48224	-161824	+	TSC_hg19_v1_chr3_+_132757234 AY358381 BC000568	-523448	+	NM_001136469 NM_023943 TSC_hg19_v1_chr3_+_132757202	-523495	+	TSC_hg19_v1_chr3_+_133292443 NM_001134422 NM_017548	11794	+	TSC_hg19_v1_chr3_+_133292588 AF103803	11890	+	TSC_hg19_v1_chr3_+_133292835 BC007338	12112	+	NM_003571|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113518|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113520|BFSP2|8419|beaded filament structural protein 2, phakinin##HQ258421|BFSP2|8419|beaded filament structural protein 2, phakinin##U48224|BFSP2|8419|beaded filament structural protein 2, phakinin##AY358381|TMEM108|66000|transmembrane protein 108##BC000568|TMEM108|66000|transmembrane protein 108##NM_001136469|TMEM108|66000|transmembrane protein 108##NM_023943|TMEM108|66000|transmembrane protein 108##NM_001134422|CDV3|55573|CDV3 homolog (mouse)##NM_017548|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)	1.794466	0.0	denovo_WM_7:-14:0.875	denovo_WM_7:-29:0.446	denovo_WM_7:-30:0.459
chr4	39963638	39963785	reg1012351.p1	4.971	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-263907	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-323155	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-434085	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	15627	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	15882	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	94821	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.998032	0.0	denovo_WM_7:-22:0.549	denovo_WM_7:-25:0.348
chrX	106953874	106953968	reg1010884.p1	4.971	+	AK307748 AK312706 AK316467 TSC_hg19_v1_chrX_+_106871744 AK297968 BC001605 X15331 AK223169 DQ895833 EU176362 AB464022 CU674782	-82123	+	NM_001204402 NM_002764 TSC_hg19_v1_chrX_+_106871719 D00860	-82226	+	BC033510 NM_001169154 NM_173494	-504060	+	BC018148 Z50781 NM_001015881	5732	-	CR533450 EU831656 EU831739 TSC_hg19_v1_chrX_-_106960193 AK311834 AY007119 AK127938	6208	-	AF153603 AF228339 AB025432 AF183393 BC072446 TSC_hg19_v1_chrX_-_106960293 AL110191 NM_004089 CR933650	6360	-	AK307748|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK312706|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK316467|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK297968|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC001605|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##X15331|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK223169|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##DQ895833|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##EU176362|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_001204402|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_002764|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##D00860|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC033510|CXorf41|139212|chromosome X open reading frame 41##NM_001169154|CXorf41|139212|chromosome X open reading frame 41##NM_173494|CXorf41|139212|chromosome X open reading frame 41##BC018148|TSC22D3|1831|TSC22 domain family, member 3##Z50781|TSC22D3|1831|TSC22 domain family, member 3##NM_001015881|TSC22D3|1831|TSC22 domain family, member 3##CR533450|TSC22D3|1831|TSC22 domain family, member 3##EU831656|TSC22D3|1831|TSC22 domain family, member 3##EU831739|TSC22D3|1831|TSC22 domain family, member 3##AK311834|TSC22D3|1831|TSC22 domain family, member 3##AY007119|TSC22D3|1831|TSC22 domain family, member 3##AK127938|TSC22D3|1831|TSC22 domain family, member 3##AF153603|TSC22D3|1831|TSC22 domain family, member 3##AF228339|TSC22D3|1831|TSC22 domain family, member 3##AB025432|TSC22D3|1831|TSC22 domain family, member 3##AF183393|TSC22D3|1831|TSC22 domain family, member 3##BC072446|TSC22D3|1831|TSC22 domain family, member 3##AL110191|TSC22D3|1831|TSC22 domain family, member 3##NM_004089|TSC22D3|1831|TSC22 domain family, member 3##CR933650|TSC22D3|1831|TSC22 domain family, member 3	0.0	0.0	
chr13	74703732	74703912	reg1008970.p1	4.970	+	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	-1070618	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-1347512	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-1347616	-	AF161471 AF113122 NM_007249	4167	-	TSC_hg19_v1_chr13_-_74708425 AK291397	4574	-	CR749622 TSC_hg19_v1_chr13_-_75901948	1198100	-	AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12##CR749622|TBC1D4|9882|TBC1 domain family, member 4	0.993832	0.0	denovo_WM_7:10:0.254	denovo_WM_7:11:0.681
chr19	17493876	17494056	reg1005881.p2	4.970	+	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	-5834	-	NM_001128855 NM_032620 NM_133644 AF360742 AF360743 AY078987 AY078988 AK298485 AK027606 AK291929 BC019261 TSC_hg19_v1_chr19_+_17448396 BC017207 AK311442 AF360744 DQ892217 DQ895413 CU676414 CU677863	-45594	+	NM_001195422 AK297953	-48167	+	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	22453	-	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	22600	+	TSC_hg19_v1_chr19_+_17530855 AK057057 AK289487	36882	+	AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##NM_001128855|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_032620|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_133644|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360742|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360743|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078987|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078988|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK298485|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK027606|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK291929|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC019261|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC017207|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK311442|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360744|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ892217|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ895413|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_001195422|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK297953|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535##AK057057|FAM125A|93343|family with sequence similarity 125, member A##AK289487|FAM125A|93343|family with sequence similarity 125, member A	1.979216	0.0	denovo_WM_7:51:0.896	denovo_WM_7:68:0.441	denovo_WM_7:69:0.452
chr6	44187963	44188143	reg1010607.p2	4.970	+	NM_001078174 NM_004955 TSC_hg19_v1_chr6_+_44187322 BC095398 AK090491 AK304285 AX746476 AB490708 AX775997 U81375 AF079117	-697	+	NM_007058 AK314054 BC033733	-61492	+	TSC_hg19_v1_chr6_+_44095393 AK093629 AX748232 NM_018426 AK309791	-92647	+	TSC_hg19_v1_chr6_+_44191331 NM_001078175 NM_001078176 BC001382 AK293558 BC008954 NM_001078177	3290	+	TSC_hg19_v1_chr6_+_44191517 AK090615 AB490709	3525	+	TSC_hg19_v1_chr6_+_44195011 DQ892133 DQ895327 CU679195	6975	+	NM_001078174|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_004955|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC095398|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK090491|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK304285|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AB490708|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AX775997|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##U81375|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AF079117|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_007058|CAPN11|11131|calpain 11##AK314054|CAPN11|11131|calpain 11##BC033733|CAPN11|11131|calpain 11##AK093629|TMEM63B|55362|transmembrane protein 63B##NM_018426|TMEM63B|55362|transmembrane protein 63B##AK309791|TMEM63B|55362|transmembrane protein 63B##NM_001078175|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078176|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC001382|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK293558|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##BC008954|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##NM_001078177|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AK090615|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##AB490709|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##DQ892133|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1##DQ895327|SLC29A1|2030|solute carrier family 29 (nucleoside transporters), member 1	0.996867	0.0	
chr7	81813395	81813525	reg1009828.p1	4.970	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-414086	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1264786	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1265026	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	259386	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	259620	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	978409	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	1.978719	0.0	denovo_WM_7:33:0.236	denovo_WM_7:34:0.236	denovo_WM_7:35:0.236	denovo_WM_7:36:0.236	denovo_WM_7:-53:0.790
chr19	2156066	2156208	reg1011568.p1	4.969	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-4584	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-4595	-	CU679595 AB384738 BC005142 TSC_hg19_v1_chr19_-_2151519	-4712	-	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	8001	+	BC021037 TSC_hg19_v1_chr19_+_2222534	66337	+	BC032803 TSC_hg19_v1_chr19_+_2232168	75984	+	NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC005142|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	1.141865	0.641482	CTCF.p2:25:0.641	denovo_WM_7:-77:0.804
chr2	33709530	33709707	reg1012759.p2	4.968	+	TSC_hg19_v1_chr2_+_33701715 BX647990	-7922	+	NM_001139488	-8298	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	-48170	+	AB020653 NM_015376	29323	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	114727	-	TSC_hg19_v1_chr2_+_36582920 AY358371	2873344	+	BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)	0.926009	0.0	denovo_WM_7:-8:0.222	denovo_WM_7:-9:0.315	denovo_WM_7:-10:0.362
chr7	127496852	127497032	reg1007749.p1	4.968	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	-204606	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	-204706	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	-204760	+	BC111561 BC111745 AF196976 AJ297858 NM_022143 AK172751 TSC_hg19_v1_chr7_-_127671066 AK314047	174094	-	NM_000230 U43653 TSC_hg19_v1_chr7_+_127881332 AK313553 BC060830 BC069323 BC069452 BC069527	384391	+	CU680694 TSC_hg19_v1_chr7_-_127983862	486912	-	BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC111561|LRRC4|64101|leucine rich repeat containing 4##BC111745|LRRC4|64101|leucine rich repeat containing 4##AF196976|LRRC4|64101|leucine rich repeat containing 4##AJ297858|LRRC4|64101|leucine rich repeat containing 4##NM_022143|LRRC4|64101|leucine rich repeat containing 4##AK172751|LRRC4|64101|leucine rich repeat containing 4##AK314047|LRRC4|64101|leucine rich repeat containing 4##NM_000230|LEP|3952|leptin##U43653|LEP|3952|leptin##AK313553|LEP|3952|leptin##BC060830|LEP|3952|leptin##BC069323|LEP|3952|leptin##BC069452|LEP|3952|leptin##BC069527|LEP|3952|leptin	0.852821	0.0	denovo_WM_7:-44:0.634
chr3	125070181	125070319	reg1008717.p1	4.967	+	AK123001 TSC_hg19_v1_chr3_-_124931591 AX721165 AK131070 NM_024628	-138665	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	-140033	-	BC063528 TSC_hg19_v1_chr3_-_124842461	-227795	-	AF039019 AL833616 AF432210 AJ236885 L04282 BC035591 BC018971 AK314203 TSC_hg19_v1_chr3_-_125094153 BC050260 NM_021964	23850	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	168781	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	168803	-	AK123001|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_024628|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC063528|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF039019|ZNF148|7707|zinc finger protein 148##AL833616|ZNF148|7707|zinc finger protein 148##AF432210|ZNF148|7707|zinc finger protein 148##AJ236885|ZNF148|7707|zinc finger protein 148##L04282|ZNF148|7707|zinc finger protein 148##BC035591|ZNF148|7707|zinc finger protein 148##BC018971|ZNF148|7707|zinc finger protein 148##AK314203|ZNF148|7707|zinc finger protein 148##BC050260|ZNF148|7707|zinc finger protein 148##NM_021964|ZNF148|7707|zinc finger protein 148##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##NM_003794|SNX4|8723|sorting nexin 4	0.999691	0.0	
chr10	121544138	121544307	reg1007932.p1	4.966	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	-58517	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	-58608	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	-58684	+	NM_001243194 AK123633	34554	+	TSC_hg19_v1_chr10_-_121602031 BC000935	57841	-	AK023143 TSC_hg19_v1_chr10_-_121632359 BC004183 BC007219 NM_024834	88118	-	BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_001243194|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK123633|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC000935|MCMBP|79892|minichromosome maintenance complex binding protein##AK023143|MCMBP|79892|minichromosome maintenance complex binding protein##BC004183|MCMBP|79892|minichromosome maintenance complex binding protein##BC007219|MCMBP|79892|minichromosome maintenance complex binding protein##NM_024834|MCMBP|79892|minichromosome maintenance complex binding protein	0.0	0.0	
chr1	120784443	120784624	reg1001214.p1	4.966	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-172218	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-172267	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-172327	-	NM_001100910	54471	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	151376	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	151419	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.99454	0.0	
chr12	51157534	51157714	reg1004068.p2	4.966	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-258725	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-258869	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-288037	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	254	+	TSC_hg19_v1_chr12_+_51158275 AK299240	634	+	NM_182559 BC035123 BC048112 CU690554	79099	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	0.0	0.0	
chr12	57457907	57458058	reg1006749.p1	4.966	+	AF105424 AF127026 NM_005379 BC059387	-14103	-	AF216586 AF186112 AX810719 AF136174 AX810703 AF537113 AF537114 AF537115 AF537116 AF537117 AF537118 AF537119 AF537120 AF537121 AY358679 BC032145 NM_001178054 NM_013251	-47673	-	BC140890 BC146867 AB002350 BC152461 TSC_hg19_v1_chr12_-_57400241 AK292468 NM_014830	-57731	-	TSC_hg19_v1_chr12_-_57472533 HQ258223 AB383838 AB006624	14529	-	TSC_hg19_v1_chr12_-_57472537 BC071597 BC117436 BC126300 BC144029 CR749406 AK294566	14558	-	TSC_hg19_v1_chr12_-_57472548 AL833310 AL833311	14567	-	AF105424|MYO1A|4640|myosin IA##AF127026|MYO1A|4640|myosin IA##NM_005379|MYO1A|4640|myosin IA##BC059387|MYO1A|4640|myosin IA##AF216586|TAC3|6866|tachykinin 3##AF186112|TAC3|6866|tachykinin 3##AF537113|TAC3|6866|tachykinin 3##AF537114|TAC3|6866|tachykinin 3##AF537115|TAC3|6866|tachykinin 3##AF537116|TAC3|6866|tachykinin 3##AF537117|TAC3|6866|tachykinin 3##AF537118|TAC3|6866|tachykinin 3##AF537119|TAC3|6866|tachykinin 3##AF537120|TAC3|6866|tachykinin 3##AF537121|TAC3|6866|tachykinin 3##AY358679|TAC3|6866|tachykinin 3##BC032145|TAC3|6866|tachykinin 3##NM_001178054|TAC3|6866|tachykinin 3##NM_013251|TAC3|6866|tachykinin 3##BC140890|ZBTB39|9880|zinc finger and BTB domain containing 39##BC146867|ZBTB39|9880|zinc finger and BTB domain containing 39##AB002350|ZBTB39|9880|zinc finger and BTB domain containing 39##BC152461|ZBTB39|9880|zinc finger and BTB domain containing 39##AK292468|ZBTB39|9880|zinc finger and BTB domain containing 39##NM_014830|ZBTB39|9880|zinc finger and BTB domain containing 39##HQ258223|TMEM194A|23306|transmembrane protein 194A##AB006624|TMEM194A|23306|transmembrane protein 194A##BC071597|TMEM194A|23306|transmembrane protein 194A##BC117436|TMEM194A|23306|transmembrane protein 194A##BC126300|TMEM194A|23306|transmembrane protein 194A##BC144029|TMEM194A|23306|transmembrane protein 194A##CR749406|TMEM194A|23306|transmembrane protein 194A##AK294566|TMEM194A|23306|transmembrane protein 194A##AL833310|TMEM194A|23306|transmembrane protein 194A##AL833311|TMEM194A|23306|transmembrane protein 194A	0.055378	0.0	
chr1	95469686	95469807	reg1012424.p1	4.966	+	TSC_hg19_v1_chr1_-_95392690 S80562 BC025372 AK312370 AK298145 NM_001839	-77106	-	CR541848 CU692978 DQ893013 DQ896258 TSC_hg19_v1_chr1_-_95392498	-77273	-	TSC_hg19_v1_chr1_+_95286194 AK300193	-183547	+	TSC_hg19_v1_chr1_-_95538474 BC011706 AK289395 NM_144988	68740	-	BC108263 NM_001199679	88326	+	TSC_hg19_v1_chr1_+_95582939 NM_152487 AK056404 BC137457 BC137458 BC139737	113214	+	S80562|CNN3|1266|calponin 3, acidic##BC025372|CNN3|1266|calponin 3, acidic##AK312370|CNN3|1266|calponin 3, acidic##AK298145|CNN3|1266|calponin 3, acidic##NM_001839|CNN3|1266|calponin 3, acidic##CR541848|CNN3|1266|calponin 3, acidic##DQ893013|CNN3|1266|calponin 3, acidic##DQ896258|CNN3|1266|calponin 3, acidic##AK300193|SLC44A3|126969|solute carrier family 44, member 3##BC011706|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##AK289395|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##NM_144988|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##BC108263|TMEM56|148534|transmembrane protein 56##NM_001199679|TMEM56|148534|transmembrane protein 56##NM_152487|TMEM56|148534|transmembrane protein 56##AK056404|TMEM56|148534|transmembrane protein 56##BC137457|TMEM56|148534|transmembrane protein 56##BC137458|TMEM56|148534|transmembrane protein 56##BC139737|TMEM56|148534|transmembrane protein 56	0.99962	0.0	
chr7	101376739	101376919	reg1010975.p1	4.966	+	BC002778 NM_138403	-104254	-	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-370612	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-411791	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	82380	+	M74099 NM_181552	84052	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	551568	+	BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_020979|SH2B2|10603|SH2B adaptor protein 2	0.995673	0.0	
chrX	19874185	19874343	reg1004344.p1	4.966	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-56352	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-56389	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-185208	-	TSC_hg19_v1_chrX_-_19905450 AY542305	31199	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	31368	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	31440	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.565776	0.0	denovo_WM_7:-18:0.360
chr12	131577420	131577570	reg1008613.p2	4.965	+	BX649116 NM_198827 TSC_hg19_v1_chr12_+_131438455	-139042	+	TSC_hg19_v1_chr12_+_131356640 BC072000 BC014901 BC004272 BC016654	-220784	+	AK300934 TSC_hg19_v1_chr12_+_131356617 BC014518 AL357616 BC051908	-220870	+	TSC_hg19_v1_chr12_+_132195623 BC142980	618118	+	TSC_hg19_v1_chr12_+_132195639 BC024041 AK295149 AK310836 BC008707 BC015953 NM_004592 AB208921 U08377 BC113420 BC136678 BC144364	618161	+	TSC_hg19_v1_chr12_+_132312945 BC045610 AB021225 NM_016155 BC040507	735471	+	BX649116|GPR133|283383|G protein-coupled receptor 133##NM_198827|GPR133|283383|G protein-coupled receptor 133##BC072000|RAN|5901|RAN, member RAS oncogene family##BC014901|RAN|5901|RAN, member RAS oncogene family##BC004272|RAN|5901|RAN, member RAS oncogene family##BC016654|RAN|5901|RAN, member RAS oncogene family##AK300934|RAN|5901|RAN, member RAS oncogene family##BC014518|RAN|5901|RAN, member RAS oncogene family##AL357616|RAN|5901|RAN, member RAS oncogene family##BC051908|RAN|5901|RAN, member RAS oncogene family##BC142980|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC024041|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC008707|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC015953|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_004592|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AB208921|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##U08377|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC113420|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC136678|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC144364|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC045610|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##AB021225|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##NM_016155|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC040507|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)	0.995899	0.0	denovo_WM_7:-59:0.718
chr1	82147414	82147545	reg1009981.p2	4.965	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-375552	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-2675052	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-3031981	+	AF104266 AF104938 AF104939 NM_012302	118602	+	AK097722 TSC_hg19_v1_chr1_-_84326308	2178789	-	TSC_hg19_v1_chr1_-_84326677 BC036594	2179197	-	BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.588329	0.0	denovo_WM_7:-2:0.568
chr19	2266707	2266785	reg1009338.p2	4.965	+	AK056978 NM_144616	-10328	-	NM_000479	-17634	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-29908	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	2774	+	TSC_hg19_v1_chr19_+_2269526 BC042364	2780	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	2796	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.0	0.0	
chr19	48018757	48018937	reg1011385.p1	4.965	+	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-432	-	BC007432 TSC_hg19_v1_chr19_-_48018290 AK292244 AK310114 AY927608 BC001165 AY927609 BC091511	-551	-	TSC_hg19_v1_chr19_-_48018275 BT019568 U39412 AK308633 AK310185	-628	-	NM_001101419	40265	-	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	92597	+	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	197803	+	BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC007432|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK292244|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310114|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC001165|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AY927609|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC091511|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BT019568|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##U39412|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK308633|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310185|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_001101419|ZNF541|84215|zinc finger protein 541##BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2	0.0	0.056487	
chr2	120221991	120222109	reg1010367.p2	4.965	+	TSC_hg19_v1_chr2_+_120189433 NM_183240	-32640	+	M14200 NM_001079863 AM000001	-96853	+	FM213127 NM_001178017	-97222	+	AY462218 CU690190 AB527596 U20178 U28281 TSC_hg19_v1_chr2_-_120281970	59835	-	TSC_hg19_v1_chr2_-_120282018 AK314638 NM_002980	59969	-	TSC_hg19_v1_chr2_-_120282060 BC035757	60013	-	NM_183240|TMEM37|140738|transmembrane protein 37##M14200|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001079863|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##AM000001|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##FM213127|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##NM_001178017|DBI|1622|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)##AY462218|SCTR|6344|secretin receptor##U20178|SCTR|6344|secretin receptor##U28281|SCTR|6344|secretin receptor##AK314638|SCTR|6344|secretin receptor##NM_002980|SCTR|6344|secretin receptor##BC035757|SCTR|6344|secretin receptor	0.990793	0.0	denovo_WM_7:-11:0.776
chr6	34341919	34342054	reg1009002.p1	4.965	+	TSC_hg19_v1_chr6_-_34216832 BC009526 NM_001008703 NM_001008704 NM_178508	-125123	-	BC047919 TSC_hg19_v1_chr6_-_34216784 BC023627 AK290164	-125193	-	AK311680 TSC_hg19_v1_chr6_+_34216344	-125636	+	TSC_hg19_v1_chr6_-_34360182 AB463951 BT019984 BT019985 DQ893118 DQ896391 AF062529 AF062530	18215	-	TSC_hg19_v1_chr6_-_34360360 AK313440	18349	-	TSC_hg19_v1_chr6_-_34360425 BC007727	18434	-	BC009526|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008703|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008704|C6orf1|221491|chromosome 6 open reading frame 1##NM_178508|C6orf1|221491|chromosome 6 open reading frame 1##BC047919|C6orf1|221491|chromosome 6 open reading frame 1##BC023627|C6orf1|221491|chromosome 6 open reading frame 1##AK290164|C6orf1|221491|chromosome 6 open reading frame 1##BT019984|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BT019985|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ893118|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ896391|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062529|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062530|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AK313440|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BC007727|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3	0.997112	0.0	
chr7	73815684	73815821	reg1012069.p1	4.965	+	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	-111965	+	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	-147016	-	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	-147041	-	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	52412	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	52556	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	52683	+	AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1	0.0	0.678388	CTCF.p2:18:0.678
chr14	64117465	64117578	reg1010470.p1	4.964	+	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-8959	-	BX248008 NM_001008726	-9397	-	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-107432	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	77228	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	202174	+	NM_182913 AY061758 AK297874	563356	+	AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.985519	0.0	denovo_WM_7:22:0.763
chr2	64752435	64752590	reg1010873.p1	4.964	+	TSC_hg19_v1_chr2_+_64751580 AL833962	-910	+	TSC_hg19_v1_chr2_+_64751481 NM_001002243 NM_017657 NM_203437 BC047529 AK000087 AK222821	-1028	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	-70864	+	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	128337	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	128535	-	TSC_hg19_v1_chr2_-_65090764 AK097952	338229	-	AL833962|AFTPH|54812|aftiphilin##NM_001002243|AFTPH|54812|aftiphilin##NM_017657|AFTPH|54812|aftiphilin##NM_203437|AFTPH|54812|aftiphilin##BC047529|AFTPH|54812|aftiphilin##AK000087|AFTPH|54812|aftiphilin##AK222821|AFTPH|54812|aftiphilin##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2	0.0	0.0	
chr4	15757956	15758136	reg1012154.p1	4.964	+	TSC_hg19_v1_chr4_+_15704753 AB175627 AB590680 BT019502	-53287	+	TSC_hg19_v1_chr4_+_15704695 AK312497 BC012095	-53351	+	NM_004334 D21878 TSC_hg19_v1_chr4_+_15704687	-53417	+	TSC_hg19_v1_chr4_+_15779950 AK303169 NM_001775 D84276 AK313268 M34461 BC007964 D84277 DQ893184 EU176777 AK297592	21925	+	BC003628 M60047 BC008910 BC018852 AK291307 TSC_hg19_v1_chr4_-_15939972	181914	-	NM_005130	182316	-	AB175627|BST1|683|bone marrow stromal cell antigen 1##BT019502|BST1|683|bone marrow stromal cell antigen 1##AK312497|BST1|683|bone marrow stromal cell antigen 1##BC012095|BST1|683|bone marrow stromal cell antigen 1##NM_004334|BST1|683|bone marrow stromal cell antigen 1##D21878|BST1|683|bone marrow stromal cell antigen 1##AK303169|CD38|952|CD38 molecule##NM_001775|CD38|952|CD38 molecule##D84276|CD38|952|CD38 molecule##AK313268|CD38|952|CD38 molecule##M34461|CD38|952|CD38 molecule##BC007964|CD38|952|CD38 molecule##D84277|CD38|952|CD38 molecule##DQ893184|CD38|952|CD38 molecule##EU176777|CD38|952|CD38 molecule##AK297592|CD38|952|CD38 molecule##BC003628|FGFBP1|9982|fibroblast growth factor binding protein 1##M60047|FGFBP1|9982|fibroblast growth factor binding protein 1##BC008910|FGFBP1|9982|fibroblast growth factor binding protein 1##BC018852|FGFBP1|9982|fibroblast growth factor binding protein 1##AK291307|FGFBP1|9982|fibroblast growth factor binding protein 1##NM_005130|FGFBP1|9982|fibroblast growth factor binding protein 1	0.0	0.0	
chr5	79438460	79438584	reg1013053.p1	4.964	+	BC050456 TSC_hg19_v1_chr5_+_79331170 NM_003248 AK313587 Z19585	-107358	+	TSC_hg19_v1_chr5_-_79287069 AK091375 AX746944 BX538064 BC150295 AK296864 BX647596 NM_001010891 NM_001167741	-151564	-	TSC_hg19_v1_chr5_+_78985662 BC020856 NM_153610 AL832376	-452850	+	BC101280 BC101281 BC101282 BC101283 TSC_hg19_v1_chr5_-_79551866 AF498273 AK297467 NM_001174071 NM_001174072 NM_178276	113363	-	NM_032567 AK098575 AK314007 AF333098 BC033798	177293	+	TSC_hg19_v1_chr5_+_79703879 NM_001105251 NM_014733 BC032227 BX537424 CR933621 AB002303 BC030808	265331	+	BC050456|THBS4|7060|thrombospondin 4##NM_003248|THBS4|7060|thrombospondin 4##AK313587|THBS4|7060|thrombospondin 4##Z19585|THBS4|7060|thrombospondin 4##AK091375|MTX3|345778|metaxin 3##BX538064|MTX3|345778|metaxin 3##BC150295|MTX3|345778|metaxin 3##AK296864|MTX3|345778|metaxin 3##BX647596|MTX3|345778|metaxin 3##NM_001010891|MTX3|345778|metaxin 3##NM_001167741|MTX3|345778|metaxin 3##BC020856|CMYA5|202333|cardiomyopathy associated 5##NM_153610|CMYA5|202333|cardiomyopathy associated 5##AL832376|CMYA5|202333|cardiomyopathy associated 5##BC101280|SERINC5|256987|serine incorporator 5##BC101281|SERINC5|256987|serine incorporator 5##BC101282|SERINC5|256987|serine incorporator 5##BC101283|SERINC5|256987|serine incorporator 5##AF498273|SERINC5|256987|serine incorporator 5##AK297467|SERINC5|256987|serine incorporator 5##NM_001174071|SERINC5|256987|serine incorporator 5##NM_001174072|SERINC5|256987|serine incorporator 5##NM_178276|SERINC5|256987|serine incorporator 5##NM_032567|SPZ1|84654|spermatogenic leucine zipper 1##AK098575|SPZ1|84654|spermatogenic leucine zipper 1##AK314007|SPZ1|84654|spermatogenic leucine zipper 1##AF333098|SPZ1|84654|spermatogenic leucine zipper 1##BC033798|SPZ1|84654|spermatogenic leucine zipper 1##NM_001105251|ZFYVE16|9765|zinc finger, FYVE domain containing 16##NM_014733|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC032227|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BX537424|ZFYVE16|9765|zinc finger, FYVE domain containing 16##CR933621|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AB002303|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC030808|ZFYVE16|9765|zinc finger, FYVE domain containing 16	0.0	0.032568	
chr13	53303089	53303267	reg1005956.p2	4.963	+	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	-76236	+	TSC_hg19_v1_chr13_+_53216565 BC108266	-86613	+	TSC_hg19_v1_chr13_+_53191659 NM_001011724 NM_001011725 BC007108 AK123159 BC082242	-111541	+	AB006000 CR541910 TSC_hg19_v1_chr13_-_53313891	10686	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	10784	-	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	119597	-	NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC108266|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011724|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011725|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AK123159|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##BC082242|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AB006000|LECT1|11061|leukocyte cell derived chemotaxin 1##CR541910|LECT1|11061|leukocyte cell derived chemotaxin 1##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8	0.035174	0.0	
chr1	25359234	25359367	reg1003019.p2	4.962	+	BC013362 AK310945 NM_001031680 AF022726	-67758	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	-102514	-	TSC_hg19_v1_chr1_-_25256761 AK301044	-102561	-	CU679829 DQ890663 EU176475 TSC_hg19_v1_chr1_-_25558994 AF273089 AL080166 BC010862 AK303582 AK314859 BC015824 NM_015484 NM_207170	199687	-	BC065040 TSC_hg19_v1_chr1_-_25573922	214623	-	BC001892 AF267856 AF247168 AK027318 AK292532 AK296798 TSC_hg19_v1_chr1_-_25573946 AK226012 NM_020317	214673	-	BC013362|RUNX3|864|runt-related transcription factor 3##AK310945|RUNX3|864|runt-related transcription factor 3##NM_001031680|RUNX3|864|runt-related transcription factor 3##AF022726|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##DQ890663|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##EU176475|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AF273089|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AL080166|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC010862|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK303582|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK314859|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC015824|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_015484|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_207170|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC065040|C1orf63|57035|chromosome 1 open reading frame 63##BC001892|C1orf63|57035|chromosome 1 open reading frame 63##AF267856|C1orf63|57035|chromosome 1 open reading frame 63##AF247168|C1orf63|57035|chromosome 1 open reading frame 63##AK027318|C1orf63|57035|chromosome 1 open reading frame 63##AK292532|C1orf63|57035|chromosome 1 open reading frame 63##AK296798|C1orf63|57035|chromosome 1 open reading frame 63##AK226012|C1orf63|57035|chromosome 1 open reading frame 63##NM_020317|C1orf63|57035|chromosome 1 open reading frame 63	0.995524	0.0	denovo_WM_7:39:0.985
chr16	14093064	14093131	reg1010471.p1	4.962	+	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	-79066	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-1097629	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-1195378	-	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	71989	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	187421	+	BC047761 TSC_hg19_v1_chr16_+_14294209	201101	+	BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##BC047761|MKL2|57496|MKL/myocardin-like 2	0.997566	0.0	denovo_WM_7:-39:0.449	denovo_WM_7:-40:0.449
chr18	20823373	20823492	reg1010905.p1	4.962	+	BC037218 NM_138375	-87644	+	EF028204 NM_001100619	-107706	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-309617	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	194439	-	AK057292 NM_003831	209354	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	209814	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.995731	0.0	
chr19	16696717	16696897	reg1007302.p1	4.962	+	TSC_hg19_v1_chr19_+_16683381 AK094229	-13410	+	TSC_hg19_v1_chr19_-_16683205 BC062562 NM_024881	-13611	-	TSC_hg19_v1_chr19_-_16653256 NM_006387	-43544	-	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	42193	-	TSC_hg19_v1_chr19_-_16770944 AK025602 BC069279 BX648276	74122	-	TSC_hg19_v1_chr19_-_16770956 NM_024104	74155	-	BC062562|SLC35E1|79939|solute carrier family 35, member E1##NM_024881|SLC35E1|79939|solute carrier family 35, member E1##NM_006387|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26##AK025602|C19orf42|79086|chromosome 19 open reading frame 42##BC069279|C19orf42|79086|chromosome 19 open reading frame 42##BX648276|C19orf42|79086|chromosome 19 open reading frame 42##NM_024104|C19orf42|79086|chromosome 19 open reading frame 42	0.0	0.0	
chr4	81048491	81048613	reg1009175.p2	4.962	+	TSC_hg19_v1_chr4_-_80994394 NM_001145794 NM_058172 BC107876	-54085	-	TSC_hg19_v1_chr4_-_80994237 AK091721 AX747144	-54315	-	AB527650 AY233452 TSC_hg19_v1_chr4_-_80993874 AY040326 BC114374 AB209913	-54664	-	AF275815 NM_020226	57871	+	TSC_hg19_v1_chr4_+_81118656 NM_001099403 BC071584 AK292137 BC027929	70102	+	NM_004464 NM_033143 AK312065 TSC_hg19_v1_chr4_+_81187819 AK291962 AF535149 AF171928 M37825 BC131502 BC074858 BC074859 AB016517 AB463636 AF355187	139307	+	NM_001145794|ANTXR2|118429|anthrax toxin receptor 2##NM_058172|ANTXR2|118429|anthrax toxin receptor 2##BC107876|ANTXR2|118429|anthrax toxin receptor 2##AY233452|ANTXR2|118429|anthrax toxin receptor 2##AY040326|ANTXR2|118429|anthrax toxin receptor 2##BC114374|ANTXR2|118429|anthrax toxin receptor 2##AB209913|ANTXR2|118429|anthrax toxin receptor 2##AF275815|PRDM8|56978|PR domain containing 8##NM_020226|PRDM8|56978|PR domain containing 8##NM_001099403|PRDM8|56978|PR domain containing 8##BC071584|PRDM8|56978|PR domain containing 8##AK292137|PRDM8|56978|PR domain containing 8##BC027929|PRDM8|56978|PR domain containing 8##NM_004464|FGF5|2250|fibroblast growth factor 5##NM_033143|FGF5|2250|fibroblast growth factor 5##AK312065|FGF5|2250|fibroblast growth factor 5##AK291962|FGF5|2250|fibroblast growth factor 5##AF535149|FGF5|2250|fibroblast growth factor 5##AF171928|FGF5|2250|fibroblast growth factor 5##M37825|FGF5|2250|fibroblast growth factor 5##BC131502|FGF5|2250|fibroblast growth factor 5##BC074858|FGF5|2250|fibroblast growth factor 5##BC074859|FGF5|2250|fibroblast growth factor 5##AB016517|FGF5|2250|fibroblast growth factor 5##AF355187|FGF5|2250|fibroblast growth factor 5	1.993432	0.0	
chr5	10608014	10608190	reg1007677.p2	4.962	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-43660	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-165950	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-166099	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	153157	-	TSC_hg19_v1_chr5_-_10761341 BC002726	153240	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	153297	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.0	0.0	
chr5	54634586	54634701	reg1008988.p1	4.962	+	AK291649 AK304788 TSC_hg19_v1_chr5_+_54603828 D29641 BC065258 AB527662	-30809	+	TSC_hg19_v1_chr5_+_54603816 BC104996 BC113509 BC028604	-30837	+	NM_015360 BC105291 BX640789	-31048	+	BC040295 CU691780 AB000888 BC117133 BC143281 BC168254 TSC_hg19_v1_chr5_-_54830793 AF017116 BC039847 AF014402 AF014403 BC008787 NM_003711 NM_176895	196025	-	TSC_hg19_v1_chr5_-_55008090 BC101361 BC101362 AK075190	373443	-	TSC_hg19_v1_chr5_-_55008148 AK122957 BC066891 NM_173514	373505	-	AK291649|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##AK304788|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##D29641|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC065258|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC104996|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC113509|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC028604|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##NM_015360|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC105291|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BX640789|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC040295|RNF138P1|379013|ring finger protein 138 pseudogene 1##AB000888|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC117133|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC143281|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC168254|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF017116|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC039847|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF014402|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF014403|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC008787|PPAP2A|8611|phosphatidic acid phosphatase type 2A##NM_003711|PPAP2A|8611|phosphatidic acid phosphatase type 2A##NM_176895|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC101361|SLC38A9|153129|solute carrier family 38, member 9##BC101362|SLC38A9|153129|solute carrier family 38, member 9##AK075190|SLC38A9|153129|solute carrier family 38, member 9##AK122957|SLC38A9|153129|solute carrier family 38, member 9##BC066891|SLC38A9|153129|solute carrier family 38, member 9##NM_173514|SLC38A9|153129|solute carrier family 38, member 9	1.8806	0.0	denovo_WM_7:-13:0.367	denovo_WM_7:-31:0.716
chr11	77634320	77634412	reg1006316.p1	4.961	+	TSC_hg19_v1_chr11_+_77532238 AF092136 AK024688 BC002752 NM_024684	-102163	+	AF380176 AB527448 TSC_hg19_v1_chr11_-_77531769 BC015360 NM_016578 AK098130	-102534	-	AB590787 AF026003 BT019907 AF005422 BC119634 BC119635 TSC_hg19_v1_chr11_-_77348840 U53454 AK315259 X91788 NM_001293	-285552	-	AL834171 EU446555 TSC_hg19_v1_chr11_-_77705710 CU679559 AK000455 BC018672	71318	-	BC009995 TSC_hg19_v1_chr11_-_77705714 AK290866 BC015664 NM_033547	71349	-	BC001062 BC001929 NM_023930	99936	-	AF092136|C11orf67|28971|chromosome 11 open reading frame 67##AK024688|C11orf67|28971|chromosome 11 open reading frame 67##BC002752|C11orf67|28971|chromosome 11 open reading frame 67##NM_024684|C11orf67|28971|chromosome 11 open reading frame 67##AF380176|RSF1|51773|remodeling and spacing factor 1##BC015360|RSF1|51773|remodeling and spacing factor 1##NM_016578|RSF1|51773|remodeling and spacing factor 1##AF026003|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BT019907|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AF005422|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119634|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119635|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##U53454|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AK315259|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##X91788|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##NM_001293|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AL834171|INTS4|92105|integrator complex subunit 4##EU446555|INTS4|92105|integrator complex subunit 4##AK000455|INTS4|92105|integrator complex subunit 4##BC018672|INTS4|92105|integrator complex subunit 4##BC009995|INTS4|92105|integrator complex subunit 4##AK290866|INTS4|92105|integrator complex subunit 4##BC015664|INTS4|92105|integrator complex subunit 4##NM_033547|INTS4|92105|integrator complex subunit 4##BC001062|KCTD14|65987|potassium channel tetramerisation domain containing 14##BC001929|KCTD14|65987|potassium channel tetramerisation domain containing 14##NM_023930|KCTD14|65987|potassium channel tetramerisation domain containing 14	0.999544	0.0	
chr1	36003137	36003317	reg1010982.p3	4.961	+	TSC_hg19_v1_chr1_-_35920081 AK090878	-83069	-	BX648067 TSC_hg19_v1_chr1_+_35851133	-152110	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-268599	+	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	19742	-	AK316252 TSC_hg19_v1_chr1_-_36023002	19776	-	TSC_hg19_v1_chr1_-_36023005 NM_024874	19804	-	AK090878|KIAA0319L|79932|KIAA0319-like##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like##AK316252|KIAA0319L|79932|KIAA0319-like##NM_024874|KIAA0319L|79932|KIAA0319-like	0.998421	0.0	
chr19	11146739	11146850	reg1011057.p1	4.961	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	-51918	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-74970	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-75044	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	53283	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	53338	+	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	53391	+	BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor	0.0	0.729655	CTCF.p2:-15:0.730
chr20	5249293	5249406	reg1007208.p1	4.961	+	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-141654	+	TSC_hg19_v1_chr20_+_5107615 NM_003818 AK315489 Y16521 AK304763	-141827	+	AK300558 AK311014 NM_002592	-142123	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	45687	-	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	342238	-	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	481717	+	AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##NM_003818|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK315489|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##Y16521|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK304763|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196	0.990807	0.0	denovo_WM_7:44:0.330	denovo_WM_7:45:0.330	denovo_WM_7:46:0.330
chr3	195118248	195118418	reg1009425.p2	4.961	+	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	-126483	-	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-710830	+	TSC_hg19_v1_chr3_+_194406619 NM_153690	-711710	+	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	45369	-	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	151780	-	TSC_hg19_v1_chr3_-_195306274 BT019860 BT019861 CR456838 CR541773 CU675645 DQ892668 DQ896124	187969	-	BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BT019860|APOD|347|apolipoprotein D##BT019861|APOD|347|apolipoprotein D##CR456838|APOD|347|apolipoprotein D##CR541773|APOD|347|apolipoprotein D##DQ892668|APOD|347|apolipoprotein D##DQ896124|APOD|347|apolipoprotein D	0.996654	0.0	denovo_WM_7:11:0.925
chr6	168231469	168231646	reg1007018.p1	4.961	+	TSC_hg19_v1_chr6_+_168227559 NM_001040000 NM_001207008 U02478 AB209420	-3891	+	AB016901 BC027853 TSC_hg19_v1_chr6_-_168197551	-34017	-	BC068592 U03399 BC063451 BC033909 BC034995 NM_004610	-433600	-	AB016902 NM_001129895	146061	-	AB012722 NM_005355 NM_030615 BC130489	187009	+	NM_001122841 AK097579	244981	-	NM_001040000|MLLT4|4301|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4##NM_001207008|MLLT4|4301|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4##U02478|MLLT4|4301|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4##AB209420|MLLT4|4301|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4##AB016901|C6orf123|26238|chromosome 6 open reading frame 123##BC027853|C6orf123|26238|chromosome 6 open reading frame 123##BC068592|TCP10|6953|t-complex 10 homolog (mouse)##U03399|TCP10|6953|t-complex 10 homolog (mouse)##BC063451|TCP10|6953|t-complex 10 homolog (mouse)##NM_004610|TCP10|6953|t-complex 10 homolog (mouse)##AB016902|HGC6.3|100128124|uncharacterized LOC100128124##NM_001129895|HGC6.3|100128124|uncharacterized LOC100128124##AB012722|KIF25|3834|kinesin family member 25##NM_005355|KIF25|3834|kinesin family member 25##NM_030615|KIF25|3834|kinesin family member 25##BC130489|KIF25|3834|kinesin family member 25##NM_001122841|FRMD1|79981|FERM domain containing 1##AK097579|FRMD1|79981|FERM domain containing 1	0.998185	0.0	
chr15	67429822	67430002	reg1011653.p2	4.960	+	NM_001145102 AK316017	-11789	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-71511	+	TSC_hg19_v1_chr15_+_67358179 AK290881	-71737	+	AK298139 NM_001145103	446	+	NM_001145104 AK300614 AK301348	28584	+	AB528136 AM393020 AM393411 CR533540 CU691322 TSC_hg19_v1_chr15_-_67547000 AK021568 AL136715 BC058886 BC047026 BC035852 NM_024666	117108	-	NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##AK290881|SMAD3|4088|SMAD family member 3##AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3##AM393020|AAGAB|79719|alpha- and gamma-adaptin binding protein##AM393411|AAGAB|79719|alpha- and gamma-adaptin binding protein##CR533540|AAGAB|79719|alpha- and gamma-adaptin binding protein##AK021568|AAGAB|79719|alpha- and gamma-adaptin binding protein##AL136715|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC058886|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC047026|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC035852|AAGAB|79719|alpha- and gamma-adaptin binding protein##NM_024666|AAGAB|79719|alpha- and gamma-adaptin binding protein	0.0	0.0	
chr19	5272642	5272740	reg1007787.p1	4.960	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-239792	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-303518	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-303567	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	68103	-	AK098722 NM_181710 AK292251 BC017592	182735	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	350067	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	2.618023	0.0	denovo_WM_7:-46:0.549	denovo_WM_7:-61:0.564	denovo_WM_7:-76:0.623
chr20	37558368	37558528	reg1009352.p2	4.960	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	-3380	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	-3459	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-124094	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	32541	+	BC036689 NM_005461 TSC_hg19_v1_chr20_-_39317877	1759429	-	AK310516 NM_003286 AK225095 AK292943 BC039009 BC004475 TSC_hg19_v1_chr20_+_39657500 AK310508 BC067349 J03250	2099046	+	AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC036689|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_005461|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_003286|TOP1|7150|topoisomerase (DNA) I##AK225095|TOP1|7150|topoisomerase (DNA) I##AK292943|TOP1|7150|topoisomerase (DNA) I##BC039009|TOP1|7150|topoisomerase (DNA) I##BC004475|TOP1|7150|topoisomerase (DNA) I##AK310508|TOP1|7150|topoisomerase (DNA) I##BC067349|TOP1|7150|topoisomerase (DNA) I##J03250|TOP1|7150|topoisomerase (DNA) I	0.99978	0.0	
chr2	42865194	42865345	reg1004146.p1	4.960	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-69372	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-69548	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-143567	+	AY158687 AB528920 AB083055 BC063549 NM_148962	126031	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	154482	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	588076	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.0	0.0	
chr6_qbl_hap6	1777369	1777501	reg1008814.p1	4.960	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998717	0.0	denovo_WM_7:16:0.310	denovo_WM_7:17:0.310	denovo_WM_7:18:0.310
chr14	64967152	64967270	reg1006247.p2	4.959	+	AK315336 NM_004857 BC057229	-34951	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	-112115	+	AK302747 NM_005956	-112458	+	TSC_hg19_v1_chr14_-_64970524 NM_006977 BC035804	3232	-	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	4047	+	TSC_hg19_v1_chr14_+_64971443 AB023214	4232	+	AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5##AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_006977|ZBTB25|7597|zinc finger and BTB domain containing 25##BC035804|ZBTB25|7597|zinc finger and BTB domain containing 25##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1##AB023214|ZBTB1|22890|zinc finger and BTB domain containing 1	1.200067	0.0	
chr14	89884337	89884517	reg1004434.p3	4.959	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-1017	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-5651	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-593434	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	201168	-	BC001787 BX247991 AK298930 AK094740 NM_145231	536633	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	537819	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.0	0.0	
chr17	18817468	18817648	reg1011213.p1	4.959	+	NM_001243940 AB007851 BC101670 BC101672 BC143475	-48737	+	TSC_hg19_v1_chr17_+_18761445 BC106050 AK304544	-56088	+	NM_001243941 NM_002767 TSC_hg19_v1_chr17_+_18761443 AK313087	-56146	+	AK057946 NM_001042450 NM_152351 AK298345 BC062617 BC034380	37946	+	TSC_hg19_v1_chr17_-_18908078 NM_001039999	90521	-	BT019981 CR541941 CR541966 AB528891 CU687638 BC035856 U52518 BC063035 NM_006613	132728	-	NM_001243940|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AB007851|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101670|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101672|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC143475|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC106050|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK304544|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243941|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_002767|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK313087|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK057946|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001042450|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_152351|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##AK298345|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC062617|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC034380|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001039999|FAM83G|644815|family with sequence similarity 83, member G##BT019981|GRAP|10750|GRB2-related adaptor protein##CR541941|GRAP|10750|GRB2-related adaptor protein##CR541966|GRAP|10750|GRB2-related adaptor protein##BC035856|GRAP|10750|GRB2-related adaptor protein##U52518|GRAP|10750|GRB2-related adaptor protein##BC063035|GRAP|10750|GRB2-related adaptor protein##NM_006613|GRAP|10750|GRB2-related adaptor protein	2.679981	0.0	denovo_WM_7:5:0.207	denovo_WM_7:7:0.380	denovo_WM_7:22:0.275	denovo_WM_7:23:0.355	denovo_WM_7:-56:0.875
chr17	8067197	8067373	reg1009446.p1	4.959	+	TSC_hg19_v1_chr17_-_8066267 BC002737 AK289555 BC019608 BC033870 AK225777 NM_014232	-993	-	AL050223 TSC_hg19_v1_chr17_-_8064059	-3283	-	BC028207 TSC_hg19_v1_chr17_-_8059648 AK295410	-7550	-	CU687070 BC006292 TSC_hg19_v1_chr17_-_8079699 AK127891 AK315666 AK027813 BC119730 BC119731 BC127649 BC127650 AY358525 BC070231 NM_032354 NM_183065	12375	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	26119	-	TSC_hg19_v1_chr17_-_8093499 NM_017622	26242	-	BC002737|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK289555|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC019608|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC033870|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AK225777|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##NM_014232|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##AL050223|VAMP2|6844|vesicle-associated membrane protein 2 (synaptobrevin 2)##BC028207|PER1|5187|period homolog 1 (Drosophila)##AK295410|PER1|5187|period homolog 1 (Drosophila)##BC006292|TMEM107|84314|transmembrane protein 107##AK315666|TMEM107|84314|transmembrane protein 107##AK027813|TMEM107|84314|transmembrane protein 107##BC119730|TMEM107|84314|transmembrane protein 107##BC119731|TMEM107|84314|transmembrane protein 107##BC127649|TMEM107|84314|transmembrane protein 107##BC127650|TMEM107|84314|transmembrane protein 107##AY358525|TMEM107|84314|transmembrane protein 107##BC070231|TMEM107|84314|transmembrane protein 107##NM_032354|TMEM107|84314|transmembrane protein 107##NM_183065|TMEM107|84314|transmembrane protein 107##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##NM_017622|C17orf59|54785|chromosome 17 open reading frame 59	2.571605	0.0	denovo_WM_7:-25:0.805	denovo_WM_7:-42:0.201	denovo_WM_7:-43:0.393	denovo_WM_7:-60:0.841
chr19	40283746	40283902	reg1001261.p1	4.959	+	NM_001143832	-16591	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-55185	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-88781	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	40974	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	47467	-	AB463635 M59849 TSC_hg19_v1_chr19_-_40336992	53144	-	NM_001143832|LEUTX|342900|leucine twenty homeobox##FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin##M59849|FBL|2091|fibrillarin	0.0	0.388288	CTCF.p2:-26:0.373
chr22	41602825	41602948	reg1010408.p1	4.959	+	AK097052 TSC_hg19_v1_chr22_+_41601315 AL136564 NM_031488 AK056443 AK307763 BC017191 AK074091 AJ305226 AJ305227 CR456482 AB463092 AM392807 AM393641 CU013032 CU013320 CU677853 DQ892312 DQ895512	-1561	+	TSC_hg19_v1_chr22_-_41593483 BC040700	-9397	-	TSC_hg19_v1_chr22_+_41488610 NM_001429 BC053889	-114260	+	TSC_hg19_v1_chr22_-_41634074 BC048421	31215	-	BC102006 BC040188 TSC_hg19_v1_chr22_-_41636899 BC068590 NM_138481	34008	-	BC014044 TSC_hg19_v1_chr22_-_41682182	79290	-	AK097052|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AL136564|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##NM_031488|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK056443|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK307763|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##BC017191|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK074091|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AJ305226|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AJ305227|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CR456482|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AM392807|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AM393641|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CU013032|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CU013320|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##DQ892312|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##DQ895512|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##NM_001429|EP300|2033|E1A binding protein p300##BC053889|EP300|2033|E1A binding protein p300##BC048421|CHADL|150356|chondroadherin-like##BC040188|CHADL|150356|chondroadherin-like##BC068590|CHADL|150356|chondroadherin-like##NM_138481|CHADL|150356|chondroadherin-like##BC014044|RANGAP1|5905|Ran GTPase activating protein 1	0.997179	0.0	denovo_WM_7:-68:0.976
chr9	76255963	76256050	reg1004304.p1	4.959	+	TSC_hg19_v1_chr9_+_75766797 BC001275	-489203	+	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	-489228	+	NM_000689	-687774	-	NM_006914 BC051830 Y08639	856268	+	AY333284 NM_001177311	1246256	-	AY333283 NM_001177310 AF448232 AY333282 AY333285 AY333286 AY333287 AY333288	1246728	-	BC001275|ANXA1|301|annexin A1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1##NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##NM_006914|RORB|6096|RAR-related orphan receptor B##BC051830|RORB|6096|RAR-related orphan receptor B##Y08639|RORB|6096|RAR-related orphan receptor B##AY333284|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177311|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333283|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##NM_001177310|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AF448232|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333282|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333285|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333286|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333287|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6##AY333288|TRPM6|140803|transient receptor potential cation channel, subfamily M, member 6	0.0	0.0	
chr10	3917840	3917945	reg1000259.p2	4.958	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-90383	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-90581	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-702887	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	950526	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	1087622	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	1087731	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.0	0.0	
chr17	40526694	40526810	reg1009404.p2	4.958	+	TSC_hg19_v1_chr17_+_40440515 AK301457 BC027036 AB208972 L41142	-86227	+	NM_003152 U43185	-87188	+	TSC_hg19_v1_chr17_-_40428410 U47686 AB208920 BC020868 BC065227 NM_012448	-98320	-	TSC_hg19_v1_chr17_-_40540461 BC014482 NM_213662 BC000627 BC029783 AK297994	13662	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	13780	-	TSC_hg19_v1_chr17_-_40540580 AK291933	13840	-	AK301457|STAT5A|6776|signal transducer and activator of transcription 5A##BC027036|STAT5A|6776|signal transducer and activator of transcription 5A##AB208972|STAT5A|6776|signal transducer and activator of transcription 5A##L41142|STAT5A|6776|signal transducer and activator of transcription 5A##NM_003152|STAT5A|6776|signal transducer and activator of transcription 5A##U43185|STAT5A|6776|signal transducer and activator of transcription 5A##U47686|STAT5B|6777|signal transducer and activator of transcription 5B##AB208920|STAT5B|6777|signal transducer and activator of transcription 5B##BC020868|STAT5B|6777|signal transducer and activator of transcription 5B##BC065227|STAT5B|6777|signal transducer and activator of transcription 5B##NM_012448|STAT5B|6777|signal transducer and activator of transcription 5B##BC014482|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_213662|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC000627|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC029783|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK297994|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)	0.0	0.0	
chr16	22454260	22454417	reg1010506.p1	4.957	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	-68543	-	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	-145590	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	-236665	+	NM_001135865 BC036263 AK296338 CU690320	70644	+	TSC_hg19_v1_chr16_+_22825482 AY359095 AK313463	371164	+	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	371513	+	DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AY359095|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK313463|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2	1.99036	0.0	denovo_WM_7:10:0.270	denovo_WM_7:11:0.726	denovo_WM_7:26:0.859
chr16	24990138	24990274	reg1012022.p2	4.957	+	AK125358 TSC_hg19_v1_chr16_-_24968918	-21314	-	TSC_hg19_v1_chr16_-_24942663 AK001170	-47515	-	AY044906 NM_052944 AK298373 AK125267	-132613	+	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	36406	-	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	36486	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	88083	+	AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##AK001170|ARHGAP17|55114|Rho GTPase activating protein 17##AY044906|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##NM_052944|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK298373|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK125267|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887	0.99985	0.0	
chr2	233950008	233950115	reg1007227.p1	4.957	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-24945	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-25002	+	BC069151 BC107053 NM_005383	-52680	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	210205	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	210262	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	210296	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	0.988959	0.0	denovo_WM_7:43:0.478
chr4	174089240	174089420	reg1010476.p2	4.957	+	NM_001034845 BC047551 BC144036 BC144037 BC063015	-1354686	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-3077916	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-3078132	-	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	622	+	BC043556 TSC_hg19_v1_chr4_-_174090314	980	-	BC040577 TSC_hg19_v1_chr4_-_174090813	1477	-	NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.910346	0.0	denovo_WM_7:-18:0.803
chr8	135576387	135576566	reg1006935.p2	4.957	+	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	-992379	-	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-1266979	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-1373146	+	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	132318	-	TSC_hg19_v1_chr8_-_135725053 AB463359	148603	-	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	148798	-	BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing	0.995758	0.0	
chr12	31905727	31905855	reg1005598.p4	4.956	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-23735	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-23817	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-93177	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	39413	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	206540	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	206603	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.960442	0.0	denovo_WM_7:27:0.327	denovo_WM_7:29:0.298
chr20	52201603	52201747	reg1006731.p1	4.956	+	AF041259 NM_006526	-2040	-	AK302570 NM_001193421	-399854	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-611897	+	TSC_hg19_v1_chr20_-_52210810 AK290350	9124	-	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	485387	-	AK315220 NM_003657	485628	-	AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##AK290350|ZNF217|7764|zinc finger protein 217##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1	1.829712	0.0	denovo_WM_7:-89:0.335	denovo_WM_7:-90:0.326
chr1	44297985	44298103	reg1010706.p1	4.955	+	AK301829 AY051143 NM_006279 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 TSC_hg19_v1_chr1_+_44173217 BC050380	-124826	+	TSC_hg19_v1_chr1_-_44173037 BC094867	-125021	-	BC002558 TSC_hg19_v1_chr1_+_44115828 AB014577	-182200	+	AF120274 NM_001136215 NM_057090 NM_057091	100947	+	TSC_hg19_v1_chr1_+_44412483 NM_014652	114417	+	TSC_hg19_v1_chr1_+_44412625 AB018267	114566	+	AK301829|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AY051143|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_006279|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174963|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174964|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174965|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174966|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174967|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174968|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174969|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174970|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174971|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC050380|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC094867|LOC100132774|100132774|uncharacterized LOC100132774##BC002558|KDM4A|9682|lysine (K)-specific demethylase 4A##AB014577|KDM4A|9682|lysine (K)-specific demethylase 4A##AF120274|ARTN|9048|artemin##NM_001136215|ARTN|9048|artemin##NM_057090|ARTN|9048|artemin##NM_057091|ARTN|9048|artemin##NM_014652|IPO13|9670|importin 13##AB018267|IPO13|9670|importin 13	0.0	0.0	
chr1	76191970	76192150	reg1006392.p1	4.955	+	AK312629 TSC_hg19_v1_chr1_+_76190445 AK296045 AK311022 M16827 AF251043 DQ892341 DQ895710 CU675151	-1604	+	TSC_hg19_v1_chr1_+_76190393 AK309843 AK311185 AK301039 AK315946 BX647734 BC005377 AK301717	-1655	+	NM_000016 NM_001127328 TSC_hg19_v1_chr1_+_76190106	-1986	+	AK293057 AK128861 BC020790 NM_004582 TSC_hg19_v1_chr1_+_76251940	59853	+	NM_002440 BC033030 U89293 AF104243 AB528458 CU689598 DQ891259 DQ894445	70552	+	AF403035 CU691378 BC022517 AF429968 BC036573 AK098606 NM_080868	205985	-	AK312629|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK296045|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK311022|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##M16827|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AF251043|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##DQ892341|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##DQ895710|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK309843|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK311185|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK301039|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK315946|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##BX647734|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##BC005377|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK301717|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##NM_000016|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##NM_001127328|ACADM|34|acyl-CoA dehydrogenase, C-4 to C-12 straight chain##AK293057|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##AK128861|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##BC020790|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##NM_004582|RABGGTB|5876|Rab geranylgeranyltransferase, beta subunit##NM_002440|MSH4|4438|mutS homolog 4 (E. coli)##BC033030|MSH4|4438|mutS homolog 4 (E. coli)##U89293|MSH4|4438|mutS homolog 4 (E. coli)##AF104243|MSH4|4438|mutS homolog 4 (E. coli)##DQ891259|MSH4|4438|mutS homolog 4 (E. coli)##DQ894445|MSH4|4438|mutS homolog 4 (E. coli)##AF403035|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC022517|ASB17|127247|ankyrin repeat and SOCS box containing 17##AF429968|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC036573|ASB17|127247|ankyrin repeat and SOCS box containing 17##AK098606|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_080868|ASB17|127247|ankyrin repeat and SOCS box containing 17	0.993912	0.0	denovo_WM_7:0:0.981
chr22	47397042	47397222	reg1001081.p1	4.955	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-238532	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-262977	-	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	-263053	-	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	630371	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	1488148	+	AK125256 NM_015381 AK123443 AY358847	1575029	+	NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##AK093107|LOC284930|284930|uncharacterized LOC284930##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5	1.63472	0.0	denovo_WM_7:55:0.292	denovo_WM_7:73:0.201	denovo_WM_7:74:0.201	denovo_WM_7:75:0.201
chr4	115788736	115788884	reg1008200.p1	4.955	+	NM_003360 U30930	-245288	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-269227	+	AK307532 TSC_hg19_v1_chr4_-_114900840 AY358647 NM_024590	-887971	-	BC113075 BC012326 AK289670 AB036429 NM_022569	246171	-	AK074617 BC030831 NM_152402	2217923	-	TSC_hg19_v1_chr4_+_118954764 AY358852	3165961	+	NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK307532|ARSJ|79642|arylsulfatase family, member J##AY358647|ARSJ|79642|arylsulfatase family, member J##NM_024590|ARSJ|79642|arylsulfatase family, member J##BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	1.993464	0.0	denovo_WM_7:0:0.298	denovo_WM_7:1:0.298	denovo_WM_7:2:0.298	denovo_WM_7:19:0.313	denovo_WM_7:20:0.307	denovo_WM_7:21:0.306
chr16	4555467	4555592	reg1010756.p1	4.954	+	AK093388 NM_001127205	-9671	+	NM_001127204 NM_002134 AK313660 TSC_hg19_v1_chr16_+_4526411 BC002396 S34389 AK222629	-29126	+	AF225419 NM_020677	-30634	-	AK311295 BC007604 TSC_hg19_v1_chr16_-_4563123	7522	-	TSC_hg19_v1_chr16_-_4588442 AF195661 AL833853 NM_001199054	32908	-	TSC_hg19_v1_chr16_-_4588775 BC002882 AK292036 AK302297 AL136698 AK294257 DQ167023 NM_001199055 NM_001199056 NM_013399 AK307067 AK308532	33263	-	AK093388|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127205|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127204|HMOX2|3163|heme oxygenase (decycling) 2##NM_002134|HMOX2|3163|heme oxygenase (decycling) 2##AK313660|HMOX2|3163|heme oxygenase (decycling) 2##BC002396|HMOX2|3163|heme oxygenase (decycling) 2##S34389|HMOX2|3163|heme oxygenase (decycling) 2##AK222629|HMOX2|3163|heme oxygenase (decycling) 2##AF225419|NMRAL1|57407|NmrA-like family domain containing 1##NM_020677|NMRAL1|57407|NmrA-like family domain containing 1##AK311295|C16orf5|29965|chromosome 16 open reading frame 5##BC007604|C16orf5|29965|chromosome 16 open reading frame 5##AF195661|C16orf5|29965|chromosome 16 open reading frame 5##AL833853|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199054|C16orf5|29965|chromosome 16 open reading frame 5##BC002882|C16orf5|29965|chromosome 16 open reading frame 5##AK292036|C16orf5|29965|chromosome 16 open reading frame 5##AK302297|C16orf5|29965|chromosome 16 open reading frame 5##AL136698|C16orf5|29965|chromosome 16 open reading frame 5##AK294257|C16orf5|29965|chromosome 16 open reading frame 5##DQ167023|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199055|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199056|C16orf5|29965|chromosome 16 open reading frame 5##NM_013399|C16orf5|29965|chromosome 16 open reading frame 5##AK307067|C16orf5|29965|chromosome 16 open reading frame 5##AK308532|C16orf5|29965|chromosome 16 open reading frame 5	0.0	0.0	
chr2	136765453	136765565	reg1011971.p1	4.954	+	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-22293	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	-22380	-	BT006710 CU674308 DQ890741 DQ893912 TSC_hg19_v1_chr2_-_136743053 CR749809 BC107749 AY762100	-22454	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	108289	-	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	110167	-	TSC_hg19_v1_chr2_+_137523114 AK299929	757607	+	AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##BT006710|DARS|1615|aspartyl-tRNA synthetase##DQ890741|DARS|1615|aspartyl-tRNA synthetase##DQ893912|DARS|1615|aspartyl-tRNA synthetase##CR749809|DARS|1615|aspartyl-tRNA synthetase##BC107749|DARS|1615|aspartyl-tRNA synthetase##AY762100|DARS|1615|aspartyl-tRNA synthetase##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B	1.904423	0.0	denovo_WM_7:1:0.882	denovo_WM_7:-13:0.887
chr8	135731879	135731997	reg1010804.p2	4.954	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-6664	-	TSC_hg19_v1_chr8_-_135725053 AB463359	-6859	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	-23144	-	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	737720	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	738263	+	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	3777168	-	BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B	0.0	0.0	
chrX	46795105	46795285	reg1006993.p1	4.954	+	TSC_hg19_v1_chrX_+_46771855 AK291220 NM_001077445 D86969 NM_014735 BC113880 BC114487 AF127774	-23260	+	TSC_hg19_v1_chrX_+_46696479 AK312555 CU692158	-98691	+	BC043348 BC053530 TSC_hg19_v1_chrX_+_46696426	-98769	+	TSC_hg19_v1_chrX_+_46937753 AK223360 NM_004683 NM_152869	142564	+	TSC_hg19_v1_chrX_+_46937812 BC050371 BC058880 AK290136	142642	+	TSC_hg19_v1_chrX_+_46937889 BC073173 AB032064	142735	+	AK291220|PHF16|9767|PHD finger protein 16##NM_001077445|PHF16|9767|PHD finger protein 16##D86969|PHF16|9767|PHD finger protein 16##NM_014735|PHF16|9767|PHD finger protein 16##BC113880|PHF16|9767|PHD finger protein 16##BC114487|PHF16|9767|PHD finger protein 16##AF127774|PHF16|9767|PHD finger protein 16##AK312555|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC043348|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC053530|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AK223360|RGN|9104|regucalcin (senescence marker protein-30)##NM_004683|RGN|9104|regucalcin (senescence marker protein-30)##NM_152869|RGN|9104|regucalcin (senescence marker protein-30)##BC050371|RGN|9104|regucalcin (senescence marker protein-30)##BC058880|RGN|9104|regucalcin (senescence marker protein-30)##AK290136|RGN|9104|regucalcin (senescence marker protein-30)##BC073173|RGN|9104|regucalcin (senescence marker protein-30)##AB032064|RGN|9104|regucalcin (senescence marker protein-30)	0.999554	0.0	
chr12	12774456	12774564	reg1011821.p1	4.953	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-9627	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-9715	+	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	-59110	-	AK096388 NM_006143	74610	-	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	95616	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	104346	+	BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1	0.99785	0.0	
chr14	77431015	77431186	reg1010149.p1	4.953	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-138305	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-151838	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-151890	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	63584	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	63960	-	AK124327 TSC_hg19_v1_chr14_-_77542533	111433	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.993931	0.0	denovo_WM_7:-17:0.454
chr22	29161489	29161592	reg1012279.p1	4.953	+	TSC_hg19_v1_chr22_-_29138399 AF217975	-23137	-	BC000004 TSC_hg19_v1_chr22_+_29138056 NM_172002 BC065569 CR456462 AY191719 AB528150 CU013013 CU013301	-23479	+	BC004207 AK289360 CR456418 NM_001005735 NM_007194 NM_145862 AK290754 AB164374	-23723	-	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	7104	+	TSC_hg19_v1_chr22_+_29168718 BC065549 BC053874 BC040488 AK302925	7159	+	TSC_hg19_v1_chr22_+_29168732 AK091133 AX746797 AK295140 CR456461 AB528096 CU013012 CU013300 CU691050	7239	+	AF217975|CHEK2|11200|checkpoint kinase 2##NM_172002|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC065569|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##CR456462|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##AY191719|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC004207|CHEK2|11200|checkpoint kinase 2##AK289360|CHEK2|11200|checkpoint kinase 2##CR456418|CHEK2|11200|checkpoint kinase 2##NM_001005735|CHEK2|11200|checkpoint kinase 2##NM_007194|CHEK2|11200|checkpoint kinase 2##NM_145862|CHEK2|11200|checkpoint kinase 2##AK290754|CHEK2|11200|checkpoint kinase 2##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117##BC065549|CCDC117|150275|coiled-coil domain containing 117##BC053874|CCDC117|150275|coiled-coil domain containing 117##BC040488|CCDC117|150275|coiled-coil domain containing 117##AK302925|CCDC117|150275|coiled-coil domain containing 117##AK091133|CCDC117|150275|coiled-coil domain containing 117##AK295140|CCDC117|150275|coiled-coil domain containing 117##CR456461|CCDC117|150275|coiled-coil domain containing 117	0.9996	0.0	
chr3	183724456	183724636	reg1001850.p1	4.953	+	TSC_hg19_v1_chr3_-_183602690 NM_001037639 NM_018622	-121838	-	TSC_hg19_v1_chr3_-_183602669 BC003653	-121868	-	TSC_hg19_v1_chr3_-_183602663 AK024765	-121884	-	TSC_hg19_v1_chr3_-_183735673 BC142670 BC142719 U83661 AF104942 AY754874 AY754875 AY754876 AB209454 BC051358 NM_001023587 NM_005688	11145	-	AY159812 NM_182537	24785	+	NM_001145143	24983	+	NM_001037639|PARL|55486|presenilin associated, rhomboid-like##NM_018622|PARL|55486|presenilin associated, rhomboid-like##BC003653|PARL|55486|presenilin associated, rhomboid-like##AK024765|PARL|55486|presenilin associated, rhomboid-like##BC142670|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##BC142719|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##U83661|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AF104942|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754874|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754875|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY754876|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AB209454|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##BC051358|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##NM_001023587|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##NM_005688|ABCC5|10057|ATP-binding cassette, sub-family C (CFTR/MRP), member 5##AY159812|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D##NM_182537|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D##NM_001145143|HTR3D|200909|5-hydroxytryptamine (serotonin) receptor 3 family member D	0.0	0.0	
chr4	13434594	13434774	reg1012396.p2	4.953	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-2004152	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-2748283	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-2975674	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	51267	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	51291	-	AB463932 AF009801 EU446467 BC111966 NM_001189	111391	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	1.977546	0.0	denovo_WM_7:-69:0.499	denovo_WM_7:-70:0.429	denovo_WM_7:83:0.469	denovo_WM_7:88:0.352
chr10	49876048	49876228	reg1005471.p2	4.952	+	TSC_hg19_v1_chr10_-_49864302 AK055937	-11833	-	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	-63051	-	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	-266466	+	TSC_hg19_v1_chr10_+_49892917 BC034937	16752	+	AK127650 NM_020945	17377	+	NM_001006939 BC036722	246142	-	AK055937|ARHGAP22|58504|Rho GTPase activating protein 22##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##BC034937|WDFY4|57705|WDFY family member 4##AK127650|WDFY4|57705|WDFY family member 4##NM_020945|WDFY4|57705|WDFY family member 4##NM_001006939|LRRC18|474354|leucine rich repeat containing 18##BC036722|LRRC18|474354|leucine rich repeat containing 18	0.0	0.0	
chr3	32376265	32376373	reg1009484.p2	4.952	+	TSC_hg19_v1_chr3_+_32280215 BC041390	-96100	+	TSC_hg19_v1_chr3_+_32280171 AF474370 AY598783 NM_178868	-96154	+	TSC_hg19_v1_chr3_+_32148151 BC028726 AK292808 AB385275	-228151	+	TSC_hg19_v1_chr3_+_32433162 AF479263 NM_138410 NM_181472 AL832450	56850	+	TSC_hg19_v1_chr3_+_32433370 BC010116 AY174113 DQ132881 AK308878	57084	+	CR457231 TSC_hg19_v1_chr3_-_32544290	167953	-	BC041390|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##AF474370|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##AY598783|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##NM_178868|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##BC028726|GPD1L|23171|glycerol-3-phosphate dehydrogenase 1-like##AK292808|GPD1L|23171|glycerol-3-phosphate dehydrogenase 1-like##AF479263|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_138410|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_181472|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AL832450|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##BC010116|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AY174113|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##DQ132881|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AK308878|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6	0.0	0.0	
chr7	73617408	73617553	reg1006723.p1	4.952	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	-28777	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	-28839	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-109963	+	NM_014146 NM_032463 NM_032464	6606	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	6802	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	6856	+	AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2	1.215353	0.0	denovo_WM_7:-2:0.237	denovo_WM_7:-3:0.237	denovo_WM_7:-4:0.237	denovo_WM_7:-5:0.237	denovo_WM_7:-67:0.208
chr16	70540497	70540677	reg1009281.p2	4.951	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	-37747	+	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	-52088	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	-67606	-	BC027726 AB088369 BC128144 BC128145 AK022874 BC072438 TSC_hg19_v1_chr16_-_70557452 BX648010 AK293235 AK297557 AK096557 NM_001195139 NM_015386	16857	-	TSC_hg19_v1_chr16_+_70557713 NM_012426 AK291768	17113	+	BC009780 TSC_hg19_v1_chr16_+_70557724	17137	+	AK096727|FUK|197258|fucokinase##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##BC027726|COG4|25839|component of oligomeric golgi complex 4##AB088369|COG4|25839|component of oligomeric golgi complex 4##BC128144|COG4|25839|component of oligomeric golgi complex 4##BC128145|COG4|25839|component of oligomeric golgi complex 4##AK022874|COG4|25839|component of oligomeric golgi complex 4##BC072438|COG4|25839|component of oligomeric golgi complex 4##BX648010|COG4|25839|component of oligomeric golgi complex 4##AK293235|COG4|25839|component of oligomeric golgi complex 4##AK297557|COG4|25839|component of oligomeric golgi complex 4##AK096557|COG4|25839|component of oligomeric golgi complex 4##NM_001195139|COG4|25839|component of oligomeric golgi complex 4##NM_015386|COG4|25839|component of oligomeric golgi complex 4##NM_012426|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##AK291768|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC009780|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa	1.991074	0.0	denovo_WM_7:-61:0.434	denovo_WM_7:-82:0.311
chr16	89551600	89551666	reg1006697.p1	4.951	+	AK293862 NM_001242885	-164093	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-200677	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-201559	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	5298	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	23181	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	75432	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.224471	0.0	
chr17	64466086	64466225	reg1003405.p1	4.951	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-167228	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-167405	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-240630	-	AK290171 TSC_hg19_v1_chr17_+_64831234	365080	+	BC101633 NM_145811 BC101607 AF361351 AF458898	407265	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	494734	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.028772	0.0	
chr19	11686614	11686794	reg1006284.p3	4.951	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-16671	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-37045	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-46747	-	X14618 TSC_hg19_v1_chr19_-_11688461	1747	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	1786	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	1826	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.998399	0.0	denovo_WM_7:-48:0.457	denovo_WM_7:-49:0.457
chr20	50406208	50406322	reg1008288.p2	4.951	+	TSC_hg19_v1_chr20_-_50384925 NM_006045	-21337	-	TSC_hg19_v1_chr20_-_50384875 AB385363 AB014511 AK299064	-21387	-	BC110591 BC110592 BC063701 TSC_hg19_v1_chr20_-_50314160	-92187	-	AY170621 AY170622 AY172738 BC111714 AK001666 NM_020436	12731	-	BT009760 AB527686 BC021087 AK001744 TSC_hg19_v1_chr20_-_50808313 AK090547 BC031524 AK001596 AK222712	401990	-	BC012759 BC041622 NM_018197 NM_022088 NM_199426 NM_199427	402258	-	NM_006045|ATP9A|10079|ATPase, class II, type 9A##AB014511|ATP9A|10079|ATPase, class II, type 9A##AK299064|ATP9A|10079|ATPase, class II, type 9A##BC110591|ATP9A|10079|ATPase, class II, type 9A##BC110592|ATP9A|10079|ATPase, class II, type 9A##BC063701|ATP9A|10079|ATPase, class II, type 9A##AY170621|SALL4|57167|sal-like 4 (Drosophila)##AY170622|SALL4|57167|sal-like 4 (Drosophila)##AY172738|SALL4|57167|sal-like 4 (Drosophila)##BC111714|SALL4|57167|sal-like 4 (Drosophila)##AK001666|SALL4|57167|sal-like 4 (Drosophila)##NM_020436|SALL4|57167|sal-like 4 (Drosophila)##BT009760|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC021087|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK001744|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK090547|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC031524|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK001596|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK222712|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC012759|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC041622|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_018197|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_022088|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199426|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199427|ZFP64|55734|zinc finger protein 64 homolog (mouse)	0.763291	0.0	denovo_WM_7:-15:0.231	denovo_WM_7:-17:0.234
chr2	86033675	86033810	reg1007935.p1	4.951	+	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-52737	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-112262	+	NM_000542 NM_198843	-137879	-	AY152815 NM_001042437	61050	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	82344	-	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	299241	-	NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa	0.99689	0.0	
chr8	90882996	90883130	reg1006878.p1	4.951	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	-112779	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	-113033	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1543317	-	AF061326 NM_004337	31032	+	BC031054 NM_001126111 TSC_hg19_v1_chr8_+_90914816	31731	+	TSC_hg19_v1_chr8_-_90996804 AB528582 BC143065 BC143066 BC108650 BC016762 BC005293 AF058696 AF051334 AK223256 BC146797 BC136802 BC136803 BC144413	113769	-	AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC031054|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001126111|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC143065|NBN|4683|nibrin##BC143066|NBN|4683|nibrin##BC108650|NBN|4683|nibrin##BC016762|NBN|4683|nibrin##BC005293|NBN|4683|nibrin##AF058696|NBN|4683|nibrin##AF051334|NBN|4683|nibrin##AK223256|NBN|4683|nibrin##BC146797|NBN|4683|nibrin##BC136802|NBN|4683|nibrin##BC136803|NBN|4683|nibrin##BC144413|NBN|4683|nibrin	0.996985	0.0	denovo_WM_7:26:0.424	denovo_WM_7:27:0.424
chr13	78915284	78915417	reg1009902.p2	4.950	+	D90402 NM_000115 S57283 AF308156	-365634	-	AF114165 NM_001201397	-421448	-	AF114163 AF114164 TSC_hg19_v1_chr13_-_78493569	-421799	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	254932	+	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	262373	-	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	317943	-	D90402|EDNRB|1910|endothelin receptor type B##NM_000115|EDNRB|1910|endothelin receptor type B##S57283|EDNRB|1910|endothelin receptor type B##AF114165|EDNRB|1910|endothelin receptor type B##NM_001201397|EDNRB|1910|endothelin receptor type B##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219	0.170064	0.0	
chr19	12441994	12442174	reg1012597.p1	4.950	+	TSC_hg19_v1_chr19_-_12405615 BC136502 AK297528 BC032246 AB021642 BC001868 NM_001164276 NM_016264	-36432	-	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	-136178	+	AK023304 TSC_hg19_v1_chr19_+_12305836	-136251	+	AK313755 BC022523 AK092116 AX747362 NM_145276	2400	-	AK024418 AK295923 NM_030824	34376	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	69970	-	BC136502|ZNF44|51710|zinc finger protein 44##AK297528|ZNF44|51710|zinc finger protein 44##BC032246|ZNF44|51710|zinc finger protein 44##AB021642|ZNF44|51710|zinc finger protein 44##BC001868|ZNF44|51710|zinc finger protein 44##NM_001164276|ZNF44|51710|zinc finger protein 44##NM_016264|ZNF44|51710|zinc finger protein 44##AK023304|LOC100289333|100289333|uncharacterized LOC100289333##AK313755|ZNF563|147837|zinc finger protein 563##BC022523|ZNF563|147837|zinc finger protein 563##AK092116|ZNF563|147837|zinc finger protein 563##NM_145276|ZNF563|147837|zinc finger protein 563##AK024418|ZNF442|79973|zinc finger protein 442##AK295923|ZNF442|79973|zinc finger protein 442##NM_030824|ZNF442|79973|zinc finger protein 442##NM_001080821|ZNF799|90576|zinc finger protein 799	0.0	0.0	
chr20	37502286	37502380	reg1009434.p2	4.950	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-67979	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-125221	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-149174	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	52656	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	52735	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	88656	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.986654	0.0	denovo_WM_7:55:0.229	denovo_WM_7:58:0.361	denovo_WM_7:59:0.233
chr3	161131820	161131952	reg1008077.p1	4.950	+	AF458592 BC037817 NM_001040100	-42078	-	AK308865 BC013317 NM_015938 TSC_hg19_v1_chr3_+_160939098 AF132941 AK296710	-192765	+	AK225664 TSC_hg19_v1_chr3_+_160939097	-192790	+	NM_001080440	82709	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	3664392	-	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	3782619	-	AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##AK308865|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC013317|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_015938|NMD3|51068|NMD3 homolog (S. cerevisiae)##AF132941|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK296710|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK225664|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_001080440|OTOL1|131149|otolin 1##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3	1.802798	0.0	denovo_WM_7:87:0.763
chr5	123991672	123991814	reg1010057.p1	4.950	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1143861	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1232599	-	NM_001136239 AK297992 AF272898 AF272899	-1566899	+	BC131507 AB033107 BC151226 NM_020747	89045	-	NM_001146319 AK316288 AK300154	1704071	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1767100	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.057051	0.0	
chr6	16511258	16511367	reg1009699.p1	4.950	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-272461	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-368002	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-381875	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	250385	-	NM_001190766	591176	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	770542	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.854104	0.0	denovo_WM_7:27:0.599
chr11	111307356	111307531	reg1008797.p1	4.949	+	NM_006235	-57287	-	CU689418 DQ890869 EU176491 AB464058 X83504 BC032549 Z47550 AK313573 TSC_hg19_v1_chr11_-_111250000	-57491	-	TSC_hg19_v1_chr11_+_111170033 AK292195 NM_001136105	-137410	+	BC031045 NM_017589	75627	-	AK128145 NM_001100388 NM_207430 BC039505	78079	+	AK055539 NM_178834	103789	+	NM_006235|POU2AF1|5450|POU class 2 associating factor 1##DQ890869|POU2AF1|5450|POU class 2 associating factor 1##EU176491|POU2AF1|5450|POU class 2 associating factor 1##X83504|POU2AF1|5450|POU class 2 associating factor 1##BC032549|POU2AF1|5450|POU class 2 associating factor 1##Z47550|POU2AF1|5450|POU class 2 associating factor 1##AK313573|POU2AF1|5450|POU class 2 associating factor 1##AK292195|C11orf93|120376|chromosome 11 open reading frame 93##NM_001136105|C11orf93|120376|chromosome 11 open reading frame 93##BC031045|BTG4|54766|B-cell translocation gene 4##NM_017589|BTG4|54766|B-cell translocation gene 4##AK128145|C11orf88|399949|chromosome 11 open reading frame 88##NM_001100388|C11orf88|399949|chromosome 11 open reading frame 88##NM_207430|C11orf88|399949|chromosome 11 open reading frame 88##BC039505|C11orf88|399949|chromosome 11 open reading frame 88##AK055539|LAYN|143903|layilin##NM_178834|LAYN|143903|layilin	0.989915	0.0	denovo_WM_7:-78:0.518
chr13	60254508	60254651	reg1001384.p1	4.949	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-2046683	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-2048632	+	NM_001040429	-2048791	+	BC041395 TSC_hg19_v1_chr13_-_60325215	70565	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	332741	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	483402	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	0.0	0.0	
chr2	122313559	122313678	reg1006582.p2	4.949	+	AK297259 TSC_hg19_v1_chr2_-_122247924	-65699	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-154463	-	TSC_hg19_v1_chr2_-_122042779 AF198488 BC064698 AL137740 NM_014553	-270845	-	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	93404	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	94027	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	180847	-	AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##AF198488|TFCP2L1|29842|transcription factor CP2-like 1##BC064698|TFCP2L1|29842|transcription factor CP2-like 1##AL137740|TFCP2L1|29842|transcription factor CP2-like 1##NM_014553|TFCP2L1|29842|transcription factor CP2-like 1##BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein	1.998012	0.0	denovo_WM_7:-27:0.382	denovo_WM_7:-28:0.291	denovo_WM_7:-44:0.274	denovo_WM_7:-45:0.366
chr4	40203464	40203604	reg1011603.p1	4.949	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-4893	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-145002	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-223941	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	133911	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	313050	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	314424	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.998844	0.0	
chr13	33780123	33780285	reg1012161.p1	4.948	+	AL049801 AY082591 AK091804 NM_001243474 NM_052851	-40	-	AY082590 BC046563 NM_001243466 NM_178007	-19989	-	TSC_hg19_v1_chr13_+_33590478 AB005142 NM_004795	-189681	+	AY366448 AY082589 AY082592 AK312888 AK308430 NM_178006	79663	-	AK094704 TSC_hg19_v1_chr13_-_33924768 AK308453	144564	-	TSC_hg19_v1_chr13_-_34250932 BX647695 NM_001243476	470731	-	AL049801|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082591|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK091804|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243474|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_052851|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082590|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##BC046563|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243466|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178007|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AB005142|KL|9365|klotho##NM_004795|KL|9365|klotho##AY366448|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082589|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082592|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK312888|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK308430|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178006|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK094704|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK308453|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##BX647695|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243476|STARD13|90627|StAR-related lipid transfer (START) domain containing 13	0.519012	0.0	denovo_WM_7:24:0.475
chr10	22177892	22178072	reg1009353.p2	4.947	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-354357	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-354588	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-354706	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	114467	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	114683	-	NM_001199938	320929	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	0.0	0.0	
chr10	79596489	79596640	reg1010194.p1	4.947	+	BC009695 AK098326 TSC_hg19_v1_chr10_-_79397567 BC062659 BC024965 NM_001014797 NM_001161352 NM_001161353 NM_002247	-199001	-	U13913 BC137115 BC137137 BC144496 CR627384 TSC_hg19_v1_chr10_-_79397499	-199078	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	-199158	-	TSC_hg19_v1_chr10_-_79628871 BC117695	32345	-	AB384502 NM_004747 AB011155 BC146794 TSC_hg19_v1_chr10_-_79686514	89838	-	AF021351 AY091459 AB384941 TSC_hg19_v1_chr10_-_79789272 BC041089 AK300329	192657	-	BC009695|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC062659|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC024965|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_001014797|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_001161352|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_001161353|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_002247|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U13913|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC137115|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC137137|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC144496|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC117695|DLG5|9231|discs, large homolog 5 (Drosophila)##NM_004747|DLG5|9231|discs, large homolog 5 (Drosophila)##AB011155|DLG5|9231|discs, large homolog 5 (Drosophila)##BC146794|DLG5|9231|discs, large homolog 5 (Drosophila)##AF021351|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AY091459|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC041089|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AK300329|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa	0.391773	0.0	
chr17	76693345	76693504	reg1007160.p1	4.947	+	NM_173628	-119949	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-318694	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-337267	-	AK316277 TSC_hg19_v1_chr17_-_76719649	26223	-	TSC_hg19_v1_chr17_-_76719676 AK293894	26327	-	TSC_hg19_v1_chr17_-_76732958 AK311535	39574	-	NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	0.998219	0.0	
chr20	39692250	39692379	reg1009788.p2	4.947	+	BC136297 TSC_hg19_v1_chr20_+_39657671 U07804 U07806	-34650	+	AK310516 NM_003286 AK225095 AK292943 BC039009 BC004475 TSC_hg19_v1_chr20_+_39657500 AK310508 BC067349 J03250	-34820	+	BC036689 NM_005461 TSC_hg19_v1_chr20_-_39317877	-374437	-	TSC_hg19_v1_chr20_+_39765861 AB210028	73548	+	TSC_hg19_v1_chr20_+_39766146 NM_002660 NM_182811 BC136466 BC144136 M34667	73874	+	TSC_hg19_v1_chr20_-_39766625 BC035080	74294	-	BC136297|TOP1|7150|topoisomerase (DNA) I##U07804|TOP1|7150|topoisomerase (DNA) I##U07806|TOP1|7150|topoisomerase (DNA) I##NM_003286|TOP1|7150|topoisomerase (DNA) I##AK225095|TOP1|7150|topoisomerase (DNA) I##AK292943|TOP1|7150|topoisomerase (DNA) I##BC039009|TOP1|7150|topoisomerase (DNA) I##BC004475|TOP1|7150|topoisomerase (DNA) I##AK310508|TOP1|7150|topoisomerase (DNA) I##BC067349|TOP1|7150|topoisomerase (DNA) I##J03250|TOP1|7150|topoisomerase (DNA) I##BC036689|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_005461|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##AB210028|PLCG1|5335|phospholipase C, gamma 1##NM_002660|PLCG1|5335|phospholipase C, gamma 1##NM_182811|PLCG1|5335|phospholipase C, gamma 1##BC136466|PLCG1|5335|phospholipase C, gamma 1##BC144136|PLCG1|5335|phospholipase C, gamma 1##M34667|PLCG1|5335|phospholipase C, gamma 1	0.0	0.165785	
chr2	224806420	224806515	reg1008791.p1	4.947	+	TSC_hg19_v1_chr2_-_224702300 BC009606 NM_001039569	-104157	-	AF393369 BC021898 TSC_hg19_v1_chr2_-_224702284 AK025338 AK299026	-104218	-	TSC_hg19_v1_chr2_-_224467145 NM_003469	-339288	-	TSC_hg19_v1_chr2_-_224810010 AF411977 AB527455 CU691898	3526	-	BC040525 AB037856 TSC_hg19_v1_chr2_-_224810016	3548	-	TSC_hg19_v1_chr2_-_224810020 AK023415 AK022888	3557	-	BC009606|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_001039569|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AF393369|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC021898|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK025338|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK299026|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_003469|SCG2|7857|secretogranin II##AF411977|WDFY1|57590|WD repeat and FYVE domain containing 1##BC040525|WDFY1|57590|WD repeat and FYVE domain containing 1##AB037856|WDFY1|57590|WD repeat and FYVE domain containing 1##AK023415|WDFY1|57590|WD repeat and FYVE domain containing 1##AK022888|WDFY1|57590|WD repeat and FYVE domain containing 1	0.0	0.0	
chr4	40319571	40319751	reg1005211.p5	4.947	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-121020	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-261129	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-340068	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	17784	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	196923	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	198297	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.0	0.0	
chr5	127211329	127211509	reg1007332.p1	4.947	+	NM_001127385 AB219832 BC071790	-222694	+	NM_001048252 AB219764	-226696	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-352225	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	207344	-	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	207940	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	208054	+	NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.024101	0.033955	
chr6	47690013	47690158	reg1011065.p1	4.947	+	AK095395 NM_153838 DQ315370	-23791	+	AY140953 DQ315369 NM_153839	-65812	+	TSC_hg19_v1_chr6_+_47445937 AF146277 BC069444	-244169	+	BC126194 BC126198 NM_181744 AY377391 AY288419 HQ258199	59703	+	BC136779 AK123835 AK299301 NM_001013732 NM_207499	346319	-	TSC_hg19_v1_chr6_-_48078931 AK300335	388840	-	AK095395|GPR115|221393|G protein-coupled receptor 115##NM_153838|GPR115|221393|G protein-coupled receptor 115##DQ315370|GPR115|221393|G protein-coupled receptor 115##AY140953|GPR111|222611|G protein-coupled receptor 111##DQ315369|GPR111|222611|G protein-coupled receptor 111##NM_153839|GPR111|222611|G protein-coupled receptor 111##AF146277|CD2AP|23607|CD2-associated protein##BC069444|CD2AP|23607|CD2-associated protein##BC126194|OPN5|221391|opsin 5##BC126198|OPN5|221391|opsin 5##NM_181744|OPN5|221391|opsin 5##AY377391|OPN5|221391|opsin 5##AY288419|OPN5|221391|opsin 5##HQ258199|OPN5|221391|opsin 5##BC136779|C6orf138|442213|chromosome 6 open reading frame 138##AK123835|C6orf138|442213|chromosome 6 open reading frame 138##AK299301|C6orf138|442213|chromosome 6 open reading frame 138##NM_001013732|C6orf138|442213|chromosome 6 open reading frame 138##NM_207499|C6orf138|442213|chromosome 6 open reading frame 138##AK300335|C6orf138|442213|chromosome 6 open reading frame 138	0.0	0.0	
chr10	6110366	6110546	reg1008476.p1	4.946	+	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	-6234	-	AF035279 BC107777 BC065506 NM_001243539	-90442	-	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	-90943	-	TSC_hg19_v1_chr10_+_6130954 NM_032905	20493	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	20543	+	TSC_hg19_v1_chr10_+_6131035 BC007871 BC039322 NM_001145547	20715	+	AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha##AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##NM_032905|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17##BC007871|RBM17|84991|RNA binding motif protein 17##BC039322|RBM17|84991|RNA binding motif protein 17##NM_001145547|RBM17|84991|RNA binding motif protein 17	0.0	0.0	
chr14	64191361	64191446	reg1010574.p2	4.946	+	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-82841	-	BX248008 NM_001008726	-83279	-	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-181314	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	3346	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	128292	+	NM_182913 AY061758 AK297874	489474	+	AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	2.061822	0.0	denovo_WM_7:-44:0.445	denovo_WM_7:-45:0.239	denovo_WM_7:-59:0.234	denovo_WM_7:-60:0.439	denovo_WM_7:63:0.205
chr17	66243434	66243603	reg1008620.p1	4.946	+	TSC_hg19_v1_chr17_+_66097706 BC045718	-145820	+	TSC_hg19_v1_chr17_+_66031889 BC034443	-211630	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	-211678	+	NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_016627 TSC_hg19_v1_chr17_+_66244216 BC056271 BC050709	662	+	TSC_hg19_v1_chr17_+_66244233 AF208856	725	+	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	11816	+	BC045718|LOC100499466|100499466|uncharacterized LOC100499466##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_001033569|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033570|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033571|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033572|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033574|AMZ2|51321|archaelysin family metallopeptidase 2##NM_016627|AMZ2|51321|archaelysin family metallopeptidase 2##BC056271|AMZ2|51321|archaelysin family metallopeptidase 2##BC050709|AMZ2|51321|archaelysin family metallopeptidase 2##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G	0.999358	0.567677	CTCF.p2:35:0.568
chr2	131528208	131528283	reg1010305.p1	4.946	+	TSC_hg19_v1_chr2_+_131513793 NM_001105194 NM_001105195	-14423	+	AK289525 NM_152698 AK095696 AK291424 BC113445 BC113447 BC143806 NM_001105193	-15130	+	BC105013 BC105041 NM_207364 AY569570 AY280965	-41562	+	AF249745 NM_015320 NM_032995	145978	+	TSC_hg19_v1_chr2_-_131851008 BC066347 BC110642 NM_001009993	322753	-	AK126289 NM_001100623 NM_017958	334174	+	NM_001105194|FAM123C|205147|family with sequence similarity 123C##NM_001105195|FAM123C|205147|family with sequence similarity 123C##AK289525|FAM123C|205147|family with sequence similarity 123C##NM_152698|FAM123C|205147|family with sequence similarity 123C##AK095696|FAM123C|205147|family with sequence similarity 123C##AK291424|FAM123C|205147|family with sequence similarity 123C##BC113445|FAM123C|205147|family with sequence similarity 123C##BC113447|FAM123C|205147|family with sequence similarity 123C##BC143806|FAM123C|205147|family with sequence similarity 123C##NM_001105193|FAM123C|205147|family with sequence similarity 123C##BC105013|GPR148|344561|G protein-coupled receptor 148##BC105041|GPR148|344561|G protein-coupled receptor 148##NM_207364|GPR148|344561|G protein-coupled receptor 148##AY569570|GPR148|344561|G protein-coupled receptor 148##AY280965|GPR148|344561|G protein-coupled receptor 148##AF249745|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_015320|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_032995|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##BC066347|FAM168B|130074|family with sequence similarity 168, member B##BC110642|FAM168B|130074|family with sequence similarity 168, member B##NM_001009993|FAM168B|130074|family with sequence similarity 168, member B##AK126289|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_001100623|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_017958|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2	0.996942	0.0	denovo_WM_7:-23:0.841
chr3	4881679	4881783	reg1009304.p2	4.946	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-346535	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-346603	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-346700	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	139385	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	139450	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	139623	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	1.984002	0.0	denovo_WM_7:4:0.977	denovo_WM_7:-10:0.977
chr12	102873117	102873259	reg1011796.p2	4.945	+	TSC_hg19_v1_chr12_-_102872329 M37484 NM_001111284	-810	-	DQ892335 DQ895540 M57703 BC018048 NM_002674	-281608	-	NM_017915 AK302724 AK300041 BC070270 AF274940 BC030962 BC018903 AK303571 AK000648 BC014313	-359130	+	AB384874 BC148266 CR541861 X56773 X56774 M29644 X00173 TSC_hg19_v1_chr12_-_102874271	1027	-	TSC_hg19_v1_chr12_-_102874302 BC152321 M27544	1114	-	AK312231 X57025 TSC_hg19_v1_chr12_-_102874323	1134	-	M37484|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##NM_001111284|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##DQ892335|PMCH|5367|pro-melanin-concentrating hormone##DQ895540|PMCH|5367|pro-melanin-concentrating hormone##M57703|PMCH|5367|pro-melanin-concentrating hormone##BC018048|PMCH|5367|pro-melanin-concentrating hormone##NM_002674|PMCH|5367|pro-melanin-concentrating hormone##NM_017915|C12orf48|55010|chromosome 12 open reading frame 48##AK302724|C12orf48|55010|chromosome 12 open reading frame 48##AK300041|C12orf48|55010|chromosome 12 open reading frame 48##BC070270|C12orf48|55010|chromosome 12 open reading frame 48##AF274940|C12orf48|55010|chromosome 12 open reading frame 48##BC030962|C12orf48|55010|chromosome 12 open reading frame 48##BC018903|C12orf48|55010|chromosome 12 open reading frame 48##AK303571|C12orf48|55010|chromosome 12 open reading frame 48##AK000648|C12orf48|55010|chromosome 12 open reading frame 48##BC014313|C12orf48|55010|chromosome 12 open reading frame 48##BC148266|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##CR541861|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X56773|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X56774|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##M29644|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X00173|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##BC152321|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##M27544|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##AK312231|IGF1|3479|insulin-like growth factor 1 (somatomedin C)##X57025|IGF1|3479|insulin-like growth factor 1 (somatomedin C)	0.379997	0.0	denovo_WM_7:5:0.232
chr14	74791673	74791789	reg1011313.p2	4.945	+	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	-22041	-	AY336059 NM_182894 BC128153	-85535	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	-240063	+	NM_018228 TSC_hg19_v1_chr14_+_74815173	23438	+	BC053325 AK023213 TSC_hg19_v1_chr14_+_74815209 AK001673	23471	+	NM_001105579	101073	-	BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##NM_018228|VRTN|55237|vertebrae development homolog (pig)##BC053325|VRTN|55237|vertebrae development homolog (pig)##AK023213|VRTN|55237|vertebrae development homolog (pig)##AK001673|VRTN|55237|vertebrae development homolog (pig)##NM_001105579|SYNDIG1L|646658|synapse differentiation inducing 1-like	0.955103	0.200537	CTCF.p2:2:0.201	denovo_WM_7:-29:0.680
chr20	48717143	48717265	reg1008229.p1	4.945	+	TSC_hg19_v1_chr20_+_48599515 NM_005985 AK313228 BC012910 AF125377 DQ891599 DQ894793 AB464226 AF131208 CU680444	-117651	+	BX640603 TSC_hg19_v1_chr20_+_48552935 BC066919 AF265215 AK301731 BC013695 AB587558 BT006795	-164261	+	TSC_hg19_v1_chr20_+_48552933 AK315638	-164273	+	BT007382 CU674232 HQ448675 TSC_hg19_v1_chr20_-_48729684 BC000468 BX647511 BX648147 NM_001032288	12486	-	TSC_hg19_v1_chr20_-_48732483 AK314754 NM_022442 BC005215 NM_021988 NM_199144	15284	-	TSC_hg19_v1_chr20_-_48770209 BC140089 BC143091 AB587452	52986	-	NM_005985|SNAI1|6615|snail homolog 1 (Drosophila)##AK313228|SNAI1|6615|snail homolog 1 (Drosophila)##BC012910|SNAI1|6615|snail homolog 1 (Drosophila)##AF125377|SNAI1|6615|snail homolog 1 (Drosophila)##DQ891599|SNAI1|6615|snail homolog 1 (Drosophila)##DQ894793|SNAI1|6615|snail homolog 1 (Drosophila)##AF131208|SNAI1|6615|snail homolog 1 (Drosophila)##BX640603|RNF114|55905|ring finger protein 114##BC066919|RNF114|55905|ring finger protein 114##AF265215|RNF114|55905|ring finger protein 114##AK301731|RNF114|55905|ring finger protein 114##BC013695|RNF114|55905|ring finger protein 114##BT006795|RNF114|55905|ring finger protein 114##AK315638|RNF114|55905|ring finger protein 114##BT007382|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##HQ448675|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC000468|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX647511|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX648147|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_001032288|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##AK314754|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_022442|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC005215|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_021988|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_199144|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC140089|TMEM189|387521|transmembrane protein 189##BC143091|TMEM189|387521|transmembrane protein 189	0.233194	0.0	
chr2	43614015	43614171	reg1009275.p1	4.945	+	TSC_hg19_v1_chr2_-_43453744 NM_006887	-160351	-	TSC_hg19_v1_chr2_-_43453736 BC020369	-160363	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	-160748	-	TSC_hg19_v1_chr2_-_43823178 AB051554 NM_001083953 BX641038 BC037990 AL832141 AY149629 AY149630 AY149631 AY149632 AY149633 BX648155 AK290023 NM_022065	209055	-	TSC_hg19_v1_chr2_+_43864411 BC063310	250320	+	TSC_hg19_v1_chr2_+_43864441 AK126308 NM_172069 AL832207 AL833546	250346	+	NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##AB051554|THADA|63892|thyroid adenoma associated##NM_001083953|THADA|63892|thyroid adenoma associated##BX641038|THADA|63892|thyroid adenoma associated##BC037990|THADA|63892|thyroid adenoma associated##AL832141|THADA|63892|thyroid adenoma associated##AY149629|THADA|63892|thyroid adenoma associated##AY149630|THADA|63892|thyroid adenoma associated##AY149631|THADA|63892|thyroid adenoma associated##AY149632|THADA|63892|thyroid adenoma associated##AY149633|THADA|63892|thyroid adenoma associated##BX648155|THADA|63892|thyroid adenoma associated##AK290023|THADA|63892|thyroid adenoma associated##NM_022065|THADA|63892|thyroid adenoma associated##BC063310|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AK126308|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##NM_172069|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL832207|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2##AL833546|PLEKHH2|130271|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	0.99896	0.0	denovo_WM_7:-46:0.314	denovo_WM_7:-47:0.314	denovo_WM_7:-48:0.314
chr10	29666423	29666539	reg1012446.p1	4.944	+	NM_032517 BC021730 AY358694	-88465	+	TSC_hg19_v1_chr10_+_28966451 NM_012342 AK290639 BC019252 AK223065 U23070	-700034	+	TSC_hg19_v1_chr10_+_28878692 BC010356	-787775	+	TSC_hg19_v1_chr10_+_29698475 BC066966 BC050354	31988	+	BC107795 AK056080 TSC_hg19_v1_chr10_+_29698485	32004	+	TSC_hg19_v1_chr10_+_29698496 BC073888	32017	+	NM_032517|LYZL1|84569|lysozyme-like 1##BC021730|LYZL1|84569|lysozyme-like 1##AY358694|LYZL1|84569|lysozyme-like 1##NM_012342|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##AK290639|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##BC019252|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##AK223065|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##U23070|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##BC010356|WAC|51322|WW domain containing adaptor with coiled-coil##BC066966|LOC387647|387647|patched domain containing 3 pseudogene##BC050354|LOC387647|387647|patched domain containing 3 pseudogene##BC107795|LOC387647|387647|patched domain containing 3 pseudogene##AK056080|LOC387647|387647|patched domain containing 3 pseudogene##BC073888|LOC387647|387647|patched domain containing 3 pseudogene	0.848012	0.950795	CTCF.p2:-1:0.951	denovo_WM_7:-54:0.542
chr2	180990149	180990323	reg1000409.p1	4.944	+	BC031216 NM_020943 TSC_hg19_v1_chr2_-_180871834 AK025635 BC057826	-118422	-	TSC_hg19_v1_chr2_-_180726110 NM_152520	-264071	-	BC092423 TSC_hg19_v1_chr2_-_180726080	-264163	-	TSC_hg19_v1_chr2_+_181845341 NM_182678 NM_006357	854989	+	TSC_hg19_v1_chr2_+_181845369 BC092407	855134	+	AF085362 BC003554 AB017644 TSC_hg19_v1_chr2_+_181845681	855407	+	BC031216|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##NM_020943|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##AK025635|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##BC057826|CWC22|57703|CWC22 spliceosome-associated protein homolog (S. cerevisiae)##NM_152520|ZNF385B|151126|zinc finger protein 385B##BC092423|ZNF385B|151126|zinc finger protein 385B##NM_182678|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##NM_006357|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC092407|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AF085362|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC003554|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AB017644|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3	0.465851	0.0	denovo_WM_7:-53:0.314
chr3	114906378	114906489	reg1002677.p2	4.944	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-40319	-	BC090936 NM_001164343	-116193	-	AK225788 NM_001164344 NM_001164345	-428313	-	NM_001130064 NM_002045	435717	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	435986	+	AK315286 TSC_hg19_v1_chr3_-_116164338	1257898	-	BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AK315286|LSAMP|4045|limbic system-associated membrane protein	0.613262	0.0	denovo_WM_7:-13:0.551
chr4	6966418	6966591	reg1009837.p2	4.944	+	TSC_hg19_v1_chr4_+_6911552 BC041167	-54938	+	TSC_hg19_v1_chr4_+_6911497 NM_020773	-55028	+	TSC_hg19_v1_chr4_-_6911379 BC032036	-55099	-	BC042376 TSC_hg19_v1_chr4_-_6988764 BC035129	22262	-	NM_001113363 TSC_hg19_v1_chr4_+_6988958	22449	+	HQ258308 AK075056 TSC_hg19_v1_chr4_-_7044729 BC105055 BC112274 NM_153376	78199	-	BC041167|TBC1D14|57533|TBC1 domain family, member 14##NM_020773|TBC1D14|57533|TBC1 domain family, member 14##BC042376|LOC100134937|100134937|uncharacterized LOC100134937##BC035129|LOC100134937|100134937|uncharacterized LOC100134937##NM_001113363|TBC1D14|57533|TBC1 domain family, member 14##HQ258308|CCDC96|257236|coiled-coil domain containing 96##AK075056|CCDC96|257236|coiled-coil domain containing 96##BC105055|CCDC96|257236|coiled-coil domain containing 96##BC112274|CCDC96|257236|coiled-coil domain containing 96##NM_153376|CCDC96|257236|coiled-coil domain containing 96	0.777015	0.0	denovo_WM_7:16:0.701
chr11	11864141	11864321	reg1007669.p1	4.943	+	TSC_hg19_v1_chr11_+_11863521 BC071559 AK027362 AK092290 AX747455	-663	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	-740	+	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	-1215	+	AY587550 DQ892906 DQ896157 AK295441 AK225156 TSC_hg19_v1_chr11_-_12030174 AB033421 AF177396 AK092979 AK098756 NM_001018057	165925	-	TSC_hg19_v1_chr11_-_12030604 AB034203	166343	-	TSC_hg19_v1_chr11_-_12030622 BC007660 NM_015881	166394	-	BC071559|USP47|55031|ubiquitin specific peptidase 47##AK027362|USP47|55031|ubiquitin specific peptidase 47##AK092290|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AY587550|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##DQ892906|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##DQ896157|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK295441|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK225156|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AB033421|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AF177396|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK092979|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK098756|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_001018057|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AB034203|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##BC007660|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_015881|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)	0.0	0.0	
chr13	42610210	42610308	reg1010900.p1	4.943	+	TSC_hg19_v1_chr13_-_42535247 AB590583 BC131802 BC053674 NM_001009814 NM_015058	-75070	-	TSC_hg19_v1_chr13_-_42535066 AK095155	-75179	-	TSC_hg19_v1_chr13_+_42031690 BC038706 AF036549	-578559	+	AK289546 NM_001204504	3912	+	NM_152910 NM_178009 AB078967 AB078968	12606	+	AK302727 NM_001204505 NM_001204506 AK122909 AK302631 BC043292 BC044822	101951	+	BC131802|KIAA0564|23078|KIAA0564##BC053674|KIAA0564|23078|KIAA0564##NM_001009814|KIAA0564|23078|KIAA0564##NM_015058|KIAA0564|23078|KIAA0564##AK095155|KIAA0564|23078|KIAA0564##BC038706|C13orf15|28984|chromosome 13 open reading frame 15##AF036549|C13orf15|28984|chromosome 13 open reading frame 15##AK289546|DGKH|160851|diacylglycerol kinase, eta##NM_001204504|DGKH|160851|diacylglycerol kinase, eta##NM_152910|DGKH|160851|diacylglycerol kinase, eta##NM_178009|DGKH|160851|diacylglycerol kinase, eta##AB078967|DGKH|160851|diacylglycerol kinase, eta##AB078968|DGKH|160851|diacylglycerol kinase, eta##AK302727|DGKH|160851|diacylglycerol kinase, eta##NM_001204505|DGKH|160851|diacylglycerol kinase, eta##NM_001204506|DGKH|160851|diacylglycerol kinase, eta##AK122909|DGKH|160851|diacylglycerol kinase, eta##AK302631|DGKH|160851|diacylglycerol kinase, eta##BC043292|DGKH|160851|diacylglycerol kinase, eta##BC044822|DGKH|160851|diacylglycerol kinase, eta	0.175936	0.0	
chr16	68003249	68003410	reg1008509.p1	4.943	+	AF047338 AF054505 AF054506 DQ892254 DQ895457 TSC_hg19_v1_chr16_-_68002543 AK293956 U55054 AK293906 BC021193 BC035480 NM_001145961 NM_001145962 NM_005072	-800	-	AK299042 NM_001145964	-2591	-	AK316415 AK097808 AK302790 NM_001145963	-5372	-	AB590471 BC037243 AJ291679 AY358390 BC057789 AK057401 NM_001129758 NM_022357	11077	-	AJ295149 NM_022355	30030	-	TSC_hg19_v1_chr16_-_68057115 BC024273	53779	-	AF047338|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AF054505|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AF054506|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##DQ892254|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##DQ895457|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK293956|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##U55054|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK293906|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC021193|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC035480|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145961|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145962|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_005072|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK299042|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145964|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK316415|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK097808|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##AK302790|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##NM_001145963|SLC12A4|6560|solute carrier family 12 (potassium/chloride transporters), member 4##BC037243|DPEP3|64180|dipeptidase 3##AJ291679|DPEP3|64180|dipeptidase 3##AY358390|DPEP3|64180|dipeptidase 3##BC057789|DPEP3|64180|dipeptidase 3##AK057401|DPEP3|64180|dipeptidase 3##NM_001129758|DPEP3|64180|dipeptidase 3##NM_022357|DPEP3|64180|dipeptidase 3##AJ295149|DPEP2|64174|dipeptidase 2##NM_022355|DPEP2|64174|dipeptidase 2##BC024273|DDX28|55794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	0.057477	0.0	
chr5	180258356	180258468	reg1007016.p1	4.943	+	TSC_hg19_v1_chr5_+_180258018 BC047586	-407	+	TSC_hg19_v1_chr5_+_180257959 AK308536	-460	+	AK057194 AK124428 TSC_hg19_v1_chr5_-_180242542	-15870	-	AK295714 TSC_hg19_v1_chr5_-_180288277 AK303450 BC029573 AK091376 AX746945 NM_001172638 NM_152283	29879	-	NM_001040462 NM_001159707 NM_001159708 NM_001159709 NM_024850 AK296597 AY358523 AK025111 AK225213 BC119696 BC119697	67762	+	AK298687 NM_001159710 AK309639 AK308012	78158	+	BC047586|LOC729678|729678|uncharacterized LOC729678##AK057194|MGAT1|4245|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK295714|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK303450|ZFP62|643836|zinc finger protein 62 homolog (mouse)##BC029573|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK091376|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001172638|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_152283|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001040462|BTNL8|79908|butyrophilin-like 8##NM_001159707|BTNL8|79908|butyrophilin-like 8##NM_001159708|BTNL8|79908|butyrophilin-like 8##NM_001159709|BTNL8|79908|butyrophilin-like 8##NM_024850|BTNL8|79908|butyrophilin-like 8##AK296597|BTNL8|79908|butyrophilin-like 8##AY358523|BTNL8|79908|butyrophilin-like 8##AK025111|BTNL8|79908|butyrophilin-like 8##AK225213|BTNL8|79908|butyrophilin-like 8##BC119696|BTNL8|79908|butyrophilin-like 8##BC119697|BTNL8|79908|butyrophilin-like 8##AK298687|BTNL8|79908|butyrophilin-like 8##NM_001159710|BTNL8|79908|butyrophilin-like 8##AK309639|BTNL8|79908|butyrophilin-like 8##AK308012|BTNL8|79908|butyrophilin-like 8	0.997066	0.0	denovo_WM_7:9:0.943
chr7	72838652	72838832	reg1008973.p1	4.943	+	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	-96450	+	AK057366 AY081948 AY081949 NM_178125	-96658	-	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	-115918	-	NM_003508 BC026333	9368	+	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	97741	-	TSC_hg19_v1_chr7_-_72936538 AF084479	97807	-	NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##NM_003508|FZD9|8326|frizzled family receptor 9##BC026333|FZD9|8326|frizzled family receptor 9##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B	0.01504	0.0	
chr9	98810358	98810491	reg1008724.p1	4.943	+	TSC_hg19_v1_chr9_-_98638262 AF194971 AL389954	-172101	-	NM_001010895 TSC_hg19_v1_chr9_+_98637942 AK129624 AK308409 AL389953	-172483	+	TSC_hg19_v1_chr9_-_98637839 AK092137 AX747374	-172571	-	BT019371 CR541894 CU689848 DQ891812 DQ894995 BC034281 NM_000197 U05659	253985	-	TSC_hg19_v1_chr9_-_99145966 HQ258608 AB106537 AB122077 AK307890 BC100278	335507	-	NM_007001 TSC_hg19_v1_chr9_-_99145994 BC113579	335596	-	AF194971|LINC00476|100128782|long intergenic non-protein coding RNA 476##AL389954|LINC00476|100128782|long intergenic non-protein coding RNA 476##NM_001010895|C9orf102|375748|chromosome 9 open reading frame 102##AK308409|C9orf102|375748|chromosome 9 open reading frame 102##AL389953|C9orf102|375748|chromosome 9 open reading frame 102##AK092137|LINC00476|100128782|long intergenic non-protein coding RNA 476##BT019371|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##CR541894|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##DQ891812|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##DQ894995|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##BC034281|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##NM_000197|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##U05659|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##HQ258608|SLC35D2|11046|solute carrier family 35, member D2##AB106537|SLC35D2|11046|solute carrier family 35, member D2##AB122077|SLC35D2|11046|solute carrier family 35, member D2##AK307890|SLC35D2|11046|solute carrier family 35, member D2##BC100278|SLC35D2|11046|solute carrier family 35, member D2##NM_007001|SLC35D2|11046|solute carrier family 35, member D2##BC113579|SLC35D2|11046|solute carrier family 35, member D2	0.989285	0.0	denovo_WM_7:-25:0.651
chr2	63270951	63271059	reg1006253.p1	4.942	+	BC029477 NM_001142614	-336975	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	-338039	+	AK292545 NM_001142615	-370020	+	NM_001199770	6186	+	NM_014562 TSC_hg19_v1_chr2_+_63277964 AK095680 AK297308 BC007621	6960	+	TSC_hg19_v1_chr2_-_63815560 AK310290	544535	-	BC029477|EHBP1|23301|EH domain binding protein 1##NM_001142614|EHBP1|23301|EH domain binding protein 1##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##NM_001199770|OTX1|5013|orthodenticle homeobox 1##NM_014562|OTX1|5013|orthodenticle homeobox 1##AK095680|OTX1|5013|orthodenticle homeobox 1##AK297308|OTX1|5013|orthodenticle homeobox 1##BC007621|OTX1|5013|orthodenticle homeobox 1##AK310290|WDPCP|51057|WD repeat containing planar cell polarity effector	2.989964	0.0	denovo_WM_7:58:0.297	denovo_WM_7:59:0.224
chr3	197461105	197461214	reg1008090.p1	4.942	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-106406	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-160958	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-178317	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	2627	-	AK303462 NM_001011537	15264	+	NM_001145642	15408	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	0.999132	0.0	denovo_WM_7:-21:0.239	denovo_WM_7:-22:0.239	denovo_WM_7:-23:0.239	denovo_WM_7:-24:0.239
chrX	56807070	56807195	reg1003299.p1	4.942	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-51441	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-217081	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-548222	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	214839	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	340796	-	BC071694 NM_019003	356925	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	1.178616	0.0	
chr1	32531935	32532115	reg1009791.p2	4.941	+	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	-52527	+	TSC_hg19_v1_chr1_-_32403992 NM_080391	-128028	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	-128094	-	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	6479	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	6549	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	41622	+	AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)	0.996052	0.0	denovo_WM_7:-22:0.928
chr13	41806144	41806303	reg1011459.p2	4.941	+	TSC_hg19_v1_chr13_-_41768706 AK299614 AL136782 AK315589 BC022033 FJ150424 NM_032138 AK091344 AX746923	-37598	-	CR533558 CU692470 AB464601 AM393035 AM393575 DQ890838 DQ893994 TSC_hg19_v1_chr13_-_41768505	-37766	-	AL833839 EU832523 EU832605 BC051349 TSC_hg19_v1_chr13_-_41706883 BC000560 AK056633 AK299627 AK096608 NM_152903	-99428	-	AK055086 AF072934 TSC_hg19_v1_chr13_-_41837713 BC027731 BC038427 BC042196 BC065496 NM_004294 AK294343	31457	-	NM_001110798 NM_018527 NM_024561 TSC_hg19_v1_chr13_+_41885376 BC064592 BC032318 AK291248 AK097224 BX640665 BC101719 BC101721 BC143506 CU689326	79279	+	TSC_hg19_v1_chr13_+_42031539 NM_014059	225328	+	AK299614|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AL136782|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK315589|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##BC022033|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##FJ150424|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##NM_032138|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AK091344|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##CR533558|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AM393035|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AM393575|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##DQ890838|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##DQ893994|KBTBD7|84078|kelch repeat and BTB (POZ) domain containing 7##AL833839|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832523|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832605|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC051349|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC000560|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK056633|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK299627|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK096608|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##NM_152903|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK055086|MTRF1|9617|mitochondrial translational release factor 1##AF072934|MTRF1|9617|mitochondrial translational release factor 1##BC027731|MTRF1|9617|mitochondrial translational release factor 1##BC038427|MTRF1|9617|mitochondrial translational release factor 1##BC042196|MTRF1|9617|mitochondrial translational release factor 1##BC065496|MTRF1|9617|mitochondrial translational release factor 1##NM_004294|MTRF1|9617|mitochondrial translational release factor 1##AK294343|MTRF1|9617|mitochondrial translational release factor 1##NM_001110798|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##NM_018527|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##NM_024561|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC064592|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC032318|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##AK291248|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##AK097224|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BX640665|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC101719|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC101721|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##BC143506|NAA16|79612|N(alpha)-acetyltransferase 16, NatA auxiliary subunit##NM_014059|C13orf15|28984|chromosome 13 open reading frame 15	0.987941	0.0	denovo_WM_7:-3:0.417	denovo_WM_7:-6:0.340
chr22	47165016	47165196	reg1004595.p2	4.941	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-6506	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-30951	-	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	-31027	-	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	862397	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	1720174	+	AK125256 NM_015381 AK123443 AY358847	1807055	+	NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##AK093107|LOC284930|284930|uncharacterized LOC284930##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5	0.99544	0.0	
chr12	123411199	123411376	reg1005399.p1	4.940	+	TSC_hg19_v1_chr12_-_123380691 AK022812 NM_024667	-30591	-	TSC_hg19_v1_chr12_-_123380645 BC005882	-30648	-	CU675175 TSC_hg19_v1_chr12_-_123380621	-30672	-	TSC_hg19_v1_chr12_-_123450999 AK027624 AB177852 AB112582 AB112583	39691	-	AF216494 AK304295 TSC_hg19_v1_chr12_-_123451051 NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444	39760	-	BC009181 BC071172 BC015605 BC047676 AK095481 AK023553 NM_024623 BC033857	48019	+	AK022812|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##NM_024667|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##BC005882|VPS37B|79720|vacuolar protein sorting 37 homolog B (S. cerevisiae)##AK027624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB177852|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112582|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AB112583|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AF216494|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK304295|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243013|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_001243014|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019624|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_019625|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##NM_203444|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##BC009181|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC071172|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC015605|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC047676|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK095481|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##AK023553|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##NM_024623|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2##BC033857|OGFOD2|79676|2-oxoglutarate and iron-dependent oxygenase domain containing 2	0.98329	0.0	denovo_WM_7:-9:0.585
chr1	35764518	35764678	reg1009384.p2	4.940	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-29970	+	TSC_hg19_v1_chr1_+_35734567 AK308320 NM_005095	-30036	+	NM_005066 TSC_hg19_v1_chr1_-_35658747 BC051192	-105853	-	BX648067 TSC_hg19_v1_chr1_+_35851133	86519	+	TSC_hg19_v1_chr1_-_35920081 AK090878	155560	-	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	258371	-	BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##AK308320|ZMYM4|9202|zinc finger, MYM-type 4##NM_005095|ZMYM4|9202|zinc finger, MYM-type 4##NM_005066|SFPQ|6421|splicing factor proline/glutamine-rich##BC051192|SFPQ|6421|splicing factor proline/glutamine-rich##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##AK090878|KIAA0319L|79932|KIAA0319-like##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like	0.996911	0.0	denovo_WM_7:42:0.239	denovo_WM_7:43:0.239	denovo_WM_7:44:0.239	denovo_WM_7:45:0.239
chr3	29728528	29728674	reg1010193.p1	4.940	+	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	-405637	+	NM_001040432	-1296615	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-1338040	-	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	919421	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	919802	+	AL832766 NM_207359	1207551	-	NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1	0.0	0.0	
chr5	125134118	125134250	reg1011762.p1	4.940	+	BC131507 AB033107 BC151226 NM_020747	-1053396	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-2286302	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-2375040	-	NM_001146319 AK316288 AK300154	561630	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	624659	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	625003	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr9	36248203	36248320	reg1012363.p1	4.940	+	TSC_hg19_v1_chr9_+_36191041 AB463527 CU676418 BT007170 DQ270158	-57221	+	TSC_hg19_v1_chr9_+_36190960 AK225153 BC019287 M20472 M20471	-57289	+	AK295692 TSC_hg19_v1_chr9_+_36190928 BC009201	-57330	+	TSC_hg19_v1_chr9_-_36258446 BC121179 AK295562 NM_001190383 NM_001190384 NM_005476	10178	-	AM697709 AM697708 AK296687 AK312539 NM_001128227 NM_001190388	28730	-	TSC_hg19_v1_chr9_-_36375965 AK024996 DQ895235 EU176239	127739	-	BT007170|CLTA|1211|clathrin, light chain A##DQ270158|CLTA|1211|clathrin, light chain A##AK225153|CLTA|1211|clathrin, light chain A##BC019287|CLTA|1211|clathrin, light chain A##M20472|CLTA|1211|clathrin, light chain A##M20471|CLTA|1211|clathrin, light chain A##AK295692|CLTA|1211|clathrin, light chain A##BC009201|CLTA|1211|clathrin, light chain A##BC121179|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK295562|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190383|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190384|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_005476|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AM697709|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AM697708|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK296687|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK312539|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001128227|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190388|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK024996|RNF38|152006|ring finger protein 38##DQ895235|RNF38|152006|ring finger protein 38##EU176239|RNF38|152006|ring finger protein 38	0.989077	0.124534	denovo_WM_7:60:0.302	denovo_WM_7:61:0.318	denovo_WM_7:62:0.238
chr12	111325866	111326042	reg1010235.p1	4.939	+	AK302207 AK093162 AX747965 NM_152591 BC064580 BC044815	-41151	+	TSC_hg19_v1_chr12_-_111180730 NM_001244974 NM_002710	-145198	-	TSC_hg19_v1_chr12_-_111180641 X74008 BC014073	-145298	-	M22815 X57542 X66141 BX538165 AK312013 BC031006 BC015821 BC031008 TSC_hg19_v1_chr12_-_111358384 NM_000432	32424	-	BC151245 NM_015267 AB006631 AF271236	145918	+	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	480892	-	AK302207|CCDC63|160762|coiled-coil domain containing 63##AK093162|CCDC63|160762|coiled-coil domain containing 63##NM_152591|CCDC63|160762|coiled-coil domain containing 63##BC064580|CCDC63|160762|coiled-coil domain containing 63##BC044815|CCDC63|160762|coiled-coil domain containing 63##NM_001244974|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_002710|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##X74008|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##BC014073|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##M22815|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##X57542|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##X66141|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BX538165|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##AK312013|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC031006|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC015821|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC031008|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##NM_000432|MYL2|4633|myosin, light chain 2, regulatory, cardiac, slow##BC151245|CUX2|23316|cut-like homeobox 2##NM_015267|CUX2|23316|cut-like homeobox 2##AB006631|CUX2|23316|cut-like homeobox 2##AF271236|CUX2|23316|cut-like homeobox 2##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A	0.0	0.028463	
chr20	32361643	32361823	reg1007803.p1	4.939	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-41937	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-53719	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-87536	-	TSC_hg19_v1_chr20_+_32399127 NM_176812	37353	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	37487	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	219746	+	BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.0	0.0	
chr3	138500082	138500204	reg1008712.p1	4.939	+	AB384841 BC114432 NM_006219 S67334	-21959	-	AK001444 NM_018147	-172225	+	NM_001033030 NM_001033031 NM_001033032 TSC_hg19_v1_chr3_+_138327638 BC012478	-172527	+	BC062549 NM_023067	165838	-	AK125319 NM_001040061	165932	+	NM_001134659	224966	-	BC114432|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##NM_006219|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##S67334|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##AK001444|FAIM|55179|Fas apoptotic inhibitory molecule##NM_018147|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033030|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033031|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033032|FAIM|55179|Fas apoptotic inhibitory molecule##BC012478|FAIM|55179|Fas apoptotic inhibitory molecule##BC062549|FOXL2|668|forkhead box L2##NM_023067|FOXL2|668|forkhead box L2##AK125319|C3orf72|401089|chromosome 3 open reading frame 72##NM_001040061|C3orf72|401089|chromosome 3 open reading frame 72##NM_001134659|PRR23A|729627|proline rich 23A	1.01634	0.0	denovo_WM_7:0:0.269	denovo_WM_7:0:0.417	denovo_WM_7:-1:0.248
chr15	78296797	78296928	reg1010020.p1	4.938	+	TSC_hg19_v1_chr15_-_77924732 AK291363	-372082	-	AY358284 TSC_hg19_v1_chr15_-_77924705 AY324320 BC011057 NM_032808	-372163	-	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	-583600	+	TSC_hg19_v1_chr15_-_78370032 AB028978 BC152465 NM_015079 NM_144572	73091	-	NM_001101404	88064	+	BT019962 CU690402 AB528675 AB012955 TSC_hg19_v1_chr15_-_78423867 AK293167 BC047381 BC057292 BC033108 NM_006383	126900	-	AK291363|LINGO1|84894|leucine rich repeat and Ig domain containing 1##AY358284|LINGO1|84894|leucine rich repeat and Ig domain containing 1##AY324320|LINGO1|84894|leucine rich repeat and Ig domain containing 1##BC011057|LINGO1|84894|leucine rich repeat and Ig domain containing 1##NM_032808|LINGO1|84894|leucine rich repeat and Ig domain containing 1##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A##AB028978|TBC1D2B|23102|TBC1 domain family, member 2B##BC152465|TBC1D2B|23102|TBC1 domain family, member 2B##NM_015079|TBC1D2B|23102|TBC1 domain family, member 2B##NM_144572|TBC1D2B|23102|TBC1 domain family, member 2B##NM_001101404|SH2D7|646892|SH2 domain containing 7##BT019962|CIB2|10518|calcium and integrin binding family member 2##AB012955|CIB2|10518|calcium and integrin binding family member 2##AK293167|CIB2|10518|calcium and integrin binding family member 2##BC047381|CIB2|10518|calcium and integrin binding family member 2##BC057292|CIB2|10518|calcium and integrin binding family member 2##BC033108|CIB2|10518|calcium and integrin binding family member 2##NM_006383|CIB2|10518|calcium and integrin binding family member 2	0.0	0.0	
chr19	19777667	19777757	reg1001908.p2	4.938	+	TSC_hg19_v1_chr19_-_19774501 NM_020410	-3203	-	AB058728 AB385506 TSC_hg19_v1_chr19_-_19774486 AK056420	-3228	-	TSC_hg19_v1_chr19_-_19754452 NM_016573	-23257	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	1945	+	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	66135	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	109493	-	NM_020410|ATP13A1|57130|ATPase type 13A1##AB058728|ATP13A1|57130|ATPase type 13A1##AK056420|ATP13A1|57130|ATPase type 13A1##NM_016573|GMIP|51291|GEM interacting protein##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440	0.0	0.0	
chr21	45283766	45283845	reg1008136.p2	4.938	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-74320	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	-74390	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-87576	-	TSC_hg19_v1_chr21_+_45285029 AY358704	1255	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	1318	+	AK300562 NM_001037553	61473	+	AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.0	0.0	
chr6	36209471	36209601	reg1010693.p1	4.938	+	TSC_hg19_v1_chr6_-_36164979 BC042825	-44552	-	TSC_hg19_v1_chr6_+_36164569 AB033112 NM_015695	-44976	+	NM_002754 TSC_hg19_v1_chr6_+_36098292 AK308018 BC085196 AF004709 BC000433 BC001641 BC004428 Y10488 AF092535 U93232 AF100546 AB451221 AB451344 AB463892 BT007221 CR536490 CR541687 DQ891372 DQ894551 EU832156 EU832250 AK222922	-111222	+	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	1425	+	AM182887 FJ457781 NM_001145717	28700	+	BC140873 BX648558 NM_001010903 TSC_hg19_v1_chr6_-_36304663	95089	-	AB033112|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_015695|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_002754|MAPK13|5603|mitogen-activated protein kinase 13##AK308018|MAPK13|5603|mitogen-activated protein kinase 13##BC085196|MAPK13|5603|mitogen-activated protein kinase 13##AF004709|MAPK13|5603|mitogen-activated protein kinase 13##BC000433|MAPK13|5603|mitogen-activated protein kinase 13##BC001641|MAPK13|5603|mitogen-activated protein kinase 13##BC004428|MAPK13|5603|mitogen-activated protein kinase 13##Y10488|MAPK13|5603|mitogen-activated protein kinase 13##AF092535|MAPK13|5603|mitogen-activated protein kinase 13##U93232|MAPK13|5603|mitogen-activated protein kinase 13##AF100546|MAPK13|5603|mitogen-activated protein kinase 13##AB451221|MAPK13|5603|mitogen-activated protein kinase 13##AB451344|MAPK13|5603|mitogen-activated protein kinase 13##BT007221|MAPK13|5603|mitogen-activated protein kinase 13##CR536490|MAPK13|5603|mitogen-activated protein kinase 13##CR541687|MAPK13|5603|mitogen-activated protein kinase 13##DQ891372|MAPK13|5603|mitogen-activated protein kinase 13##DQ894551|MAPK13|5603|mitogen-activated protein kinase 13##EU832156|MAPK13|5603|mitogen-activated protein kinase 13##EU832250|MAPK13|5603|mitogen-activated protein kinase 13##AK222922|MAPK13|5603|mitogen-activated protein kinase 13##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1##AM182887|PNPLA1|285848|patatin-like phospholipase domain containing 1##FJ457781|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145717|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC140873|C6orf222|389384|chromosome 6 open reading frame 222##BX648558|C6orf222|389384|chromosome 6 open reading frame 222##NM_001010903|C6orf222|389384|chromosome 6 open reading frame 222	0.978234	0.0	denovo_WM_7:-24:0.472	denovo_WM_7:-25:0.506
chr7	55971641	55971803	reg1000541.p1	4.938	+	TSC_hg19_v1_chr7_+_55955148 BC094796 BC048108	-16553	+	AK301928 NM_207366	-41260	-	TSC_hg19_v1_chr7_-_55640198 NM_030796	-331512	-	AK097282 NM_182633 AB464411	8626	+	TSC_hg19_v1_chr7_+_56019577 AK026553 BC047445 AF077035 NM_015969 BC054031	47859	+	TSC_hg19_v1_chr7_+_56032277 NM_001202469 NM_001483 AK097049 AK315648 BC030821 AF029786 BC000732 BC001837 AJ001259 AB528140 AM392838 BT007112 CR407612 CU674374 DQ892309 DQ895508	60695	+	BC094796|ZNF713|349075|zinc finger protein 713##AK301928|SEPT14|346288|septin 14##NM_207366|SEPT14|346288|septin 14##NM_030796|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK097282|ZNF713|349075|zinc finger protein 713##NM_182633|ZNF713|349075|zinc finger protein 713##AK026553|MRPS17|51373|mitochondrial ribosomal protein S17##BC047445|MRPS17|51373|mitochondrial ribosomal protein S17##AF077035|MRPS17|51373|mitochondrial ribosomal protein S17##NM_015969|MRPS17|51373|mitochondrial ribosomal protein S17##BC054031|MRPS17|51373|mitochondrial ribosomal protein S17##NM_001202469|GBAS|2631|glioblastoma amplified sequence##NM_001483|GBAS|2631|glioblastoma amplified sequence##AK097049|GBAS|2631|glioblastoma amplified sequence##AK315648|GBAS|2631|glioblastoma amplified sequence##BC030821|GBAS|2631|glioblastoma amplified sequence##AF029786|GBAS|2631|glioblastoma amplified sequence##BC000732|GBAS|2631|glioblastoma amplified sequence##BC001837|GBAS|2631|glioblastoma amplified sequence##AJ001259|GBAS|2631|glioblastoma amplified sequence##AM392838|GBAS|2631|glioblastoma amplified sequence##BT007112|GBAS|2631|glioblastoma amplified sequence##CR407612|GBAS|2631|glioblastoma amplified sequence##DQ892309|GBAS|2631|glioblastoma amplified sequence##DQ895508|GBAS|2631|glioblastoma amplified sequence	0.0	0.0	
chr8	42046525	42046655	reg1009466.p1	4.938	+	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	-36057	+	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	-137091	-	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-292280	-	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	18498	-	AK289387 AK290575 NM_000930 NM_033011 TSC_hg19_v1_chr8_-_42065195	18604	-	TSC_hg19_v1_chr8_+_42128819 NM_001190720 NM_001242778 NM_001556	82218	+	NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue##AK289387|PLAT|5327|plasminogen activator, tissue##AK290575|PLAT|5327|plasminogen activator, tissue##NM_000930|PLAT|5327|plasminogen activator, tissue##NM_033011|PLAT|5327|plasminogen activator, tissue##NM_001190720|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001242778|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta##NM_001556|IKBKB|3551|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta	0.0	0.0	
chr9	131444734	131444836	reg1002758.p1	4.938	+	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	-25719	-	TSC_hg19_v1_chr9_-_131418938 BC001614	-25822	-	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-56042	+	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	1219	+	TSC_hg19_v1_chr9_+_131446108 D45198 AB464200 AM393022 JF729356	1354	+	NM_001248000	2579	+	BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##BC001614|WDR34|89891|WD repeat domain 34##AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene##D45198|SET|6418|SET nuclear oncogene##AM393022|SET|6418|SET nuclear oncogene##JF729356|SET|6418|SET nuclear oncogene##NM_001248000|SET|6418|SET nuclear oncogene	0.045776	0.0	
chrX	118752399	118752573	reg1010349.p2	4.938	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-12658	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-25504	-	BC042021 NM_181777	-38189	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	74599	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	74646	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	74693	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.811353	0.0	denovo_WM_7:27:0.745
chrX	87327764	87327932	reg1008986.p1	4.937	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-555043	+	AK055953 AK298787 NM_001139515	-1809878	+	AK091842 AX747214 TSC_hg19_v1_chrX_+_85403461	-1924383	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	674392	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	1849163	+	NM_080832	3361748	+	NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##AK055953|DACH2|117154|dachshund homolog 2 (Drosophila)##AK298787|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001139515|DACH2|117154|dachshund homolog 2 (Drosophila)##AK091842|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5	0.910643	0.0	denovo_WM_7:7:0.330	denovo_WM_7:8:0.580
chr3	165538755	165538874	reg1008992.p1	4.936	+	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	-624309	-	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	-742536	-	NM_001080440	-4324219	+	M16474 BC018141 BC008396 TSC_hg19_v1_chr3_-_165555212 AK292063 M16541	16379	-	NM_000055 TSC_hg19_v1_chr3_-_165555283	16453	-	AK093296 AX748039 BC034229 NM_001199202 NM_001199201 NM_024687	1559263	-	BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001080440|OTOL1|131149|otolin 1##M16474|BCHE|590|butyrylcholinesterase##BC018141|BCHE|590|butyrylcholinesterase##BC008396|BCHE|590|butyrylcholinesterase##AK292063|BCHE|590|butyrylcholinesterase##M16541|BCHE|590|butyrylcholinesterase##NM_000055|BCHE|590|butyrylcholinesterase##AK093296|ZBBX|79740|zinc finger, B-box domain containing##BC034229|ZBBX|79740|zinc finger, B-box domain containing##NM_001199202|ZBBX|79740|zinc finger, B-box domain containing##NM_001199201|ZBBX|79740|zinc finger, B-box domain containing##NM_024687|ZBBX|79740|zinc finger, B-box domain containing	0.0	0.0	
chr3	55709770	55709950	reg1007917.p1	4.936	+	TSC_hg19_v1_chr3_-_55521567 AK090582	-188242	-	BC064694 NM_003392 AK290375 TSC_hg19_v1_chr3_-_55521332	-188528	-	AK290869 TSC_hg19_v1_chr3_-_55515412	-194452	-	BC111550 BC112391 AB002376 NM_015576	792517	-	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	881342	+	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	881386	+	AK090582|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC064694|WNT5A|7474|wingless-type MMTV integration site family, member 5A##NM_003392|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290375|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290869|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC111550|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##BC112391|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##AB002376|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_015576|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66	2.015295	0.0	denovo_WM_7:79:0.301	denovo_WM_7:80:0.241	denovo_WM_7:97:0.255	denovo_WM_7:98:0.322
chr7	45796867	45797047	reg1001285.p2	4.936	+	AB209496 TSC_hg19_v1_chr7_+_45614187	-182758	+	TSC_hg19_v1_chr7_+_45614105 AF497515 NM_021116	-182855	+	NM_005856 TSC_hg19_v1_chr7_+_45197392 AJ001016 BC022304 BC053852 AK222469 DQ891371 CU691036 AK311871 AY265459	-599561	+	TSC_hg19_v1_chr7_-_45808577 AL832059 BC092503	11633	-	NM_000596 TSC_hg19_v1_chr7_+_45928086 AK314925 BC057806 M31145 BC035263 X12385 M20841 X13405 Y00856 BT019685 FJ795026	131148	+	AF042356 TSC_hg19_v1_chr7_+_45933167	136177	+	AB209496|ADCY1|107|adenylate cyclase 1 (brain)##AF497515|ADCY1|107|adenylate cyclase 1 (brain)##NM_021116|ADCY1|107|adenylate cyclase 1 (brain)##NM_005856|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AJ001016|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##BC022304|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##BC053852|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AK222469|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##DQ891371|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AK311871|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AY265459|RAMP3|10268|receptor (G protein-coupled) activity modifying protein 3##AL832059|SEPT7P2|641977|septin 7 pseudogene 2##BC092503|SEPT7P2|641977|septin 7 pseudogene 2##NM_000596|IGFBP1|3484|insulin-like growth factor binding protein 1##AK314925|IGFBP1|3484|insulin-like growth factor binding protein 1##BC057806|IGFBP1|3484|insulin-like growth factor binding protein 1##M31145|IGFBP1|3484|insulin-like growth factor binding protein 1##BC035263|IGFBP1|3484|insulin-like growth factor binding protein 1##X12385|IGFBP1|3484|insulin-like growth factor binding protein 1##M20841|IGFBP1|3484|insulin-like growth factor binding protein 1##X13405|IGFBP1|3484|insulin-like growth factor binding protein 1##Y00856|IGFBP1|3484|insulin-like growth factor binding protein 1##BT019685|IGFBP1|3484|insulin-like growth factor binding protein 1##FJ795026|IGFBP1|3484|insulin-like growth factor binding protein 1	0.06211	0.079053	
chr11	95188483	95188606	reg1007212.p1	4.935	+	BC017296 AK096300 NM_144665 TSC_hg19_v1_chr11_-_94964367	-224240	-	TSC_hg19_v1_chr11_+_94823009 AK291673 NM_015036 BC026191 AB020637 BC071171 AB385387	-365532	+	TSC_hg19_v1_chr11_+_94800406 AF031166	-388136	+	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	334107	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	334189	-	AK021591 TSC_hg19_v1_chr11_-_95522975 BC026013 NM_144664	334422	-	BC017296|SESN3|143686|sestrin 3##AK096300|SESN3|143686|sestrin 3##NM_144665|SESN3|143686|sestrin 3##AK291673|ENDOD1|23052|endonuclease domain containing 1##NM_015036|ENDOD1|23052|endonuclease domain containing 1##BC026191|ENDOD1|23052|endonuclease domain containing 1##AB020637|ENDOD1|23052|endonuclease domain containing 1##BC071171|ENDOD1|23052|endonuclease domain containing 1##AF031166|SRSF8|10929|serine/arginine-rich splicing factor 8##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B##AK021591|FAM76B|143684|family with sequence similarity 76, member B##BC026013|FAM76B|143684|family with sequence similarity 76, member B##NM_144664|FAM76B|143684|family with sequence similarity 76, member B	0.844414	0.0	denovo_WM_7:36:0.360	denovo_WM_7:37:0.380
chr15	96867020	96867146	reg1010676.p1	4.935	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-996764	-	NM_001159644 BC025708 BC111024 AK002037	-1967774	+	NM_001159643 NM_018349 AY656717 BC131527	-2025622	+	BC106083 NM_001145155 FM208183	2078	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	6894	+	AK316086 NM_001145156	8710	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.984712	0.0	denovo_WM_7:-34:0.459	denovo_WM_7:-35:0.459
chr17	58802058	58802198	reg1008640.p1	4.935	+	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	-46915	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-124439	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-124584	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	675108	+	TSC_hg19_v1_chr17_+_59477477 U28049	675368	+	TSC_hg19_v1_chr17_+_59477713 AL832900 AB209378	675589	+	NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2##AL832900|TBX2|6909|T-box 2##AB209378|TBX2|6909|T-box 2	2.337994	0.0	denovo_WM_7:27:0.690	denovo_WM_7:-39:0.882	denovo_WM_7:79:0.326
chr19	1075158	1075326	reg1008317.p2	4.935	+	TSC_hg19_v1_chr19_+_1071219 AK128097	-4020	+	TSC_hg19_v1_chr19_+_1067558 BC035564	-7670	+	AK304271 TSC_hg19_v1_chr19_+_1067315 AK304765 D86976	-7916	+	AB464042 TSC_hg19_v1_chr19_-_1095353 AK295975 BC004441 D38251 J04965 AK312625 BC034144	20101	-	AK122813 TSC_hg19_v1_chr19_-_1095375	20133	-	TSC_hg19_v1_chr19_-_1095383 NM_002695	20150	-	AK128097|HMHA1|23526|histocompatibility (minor) HA-1##BC035564|HMHA1|23526|histocompatibility (minor) HA-1##AK304271|HMHA1|23526|histocompatibility (minor) HA-1##AK304765|HMHA1|23526|histocompatibility (minor) HA-1##D86976|HMHA1|23526|histocompatibility (minor) HA-1##AK295975|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC004441|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##D38251|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##J04965|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK312625|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##BC034144|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##AK122813|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa##NM_002695|POLR2E|5434|polymerase (RNA) II (DNA directed) polypeptide E, 25kDa	0.99842	0.0	denovo_WM_7:1:0.310	denovo_WM_7:2:0.310	denovo_WM_7:3:0.310
chr6	6543767	6543947	reg1005205.p1	4.935	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-222947	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	-222972	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	-536160	-	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	45093	+	BC039678 TSC_hg19_v1_chr6_+_6725205	181304	+	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	563969	+	NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1	0.0	0.0	
chr11	62500392	62500510	reg1010397.p1	4.934	+	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	-4424	+	TSC_hg19_v1_chr11_-_62494930 BC029105	-5516	-	TSC_hg19_v1_chr11_-_62494900 DQ470474 AK122942 NM_001079559	-5604	-	DQ892842 EU176736 TSC_hg19_v1_chr11_-_62521626 BC025249 AK027045 NM_024784	21143	-	NM_002696 TSC_hg19_v1_chr11_+_62529028	28577	+	TSC_hg19_v1_chr11_+_62529051 AK312131 BC112162 BC112164 U20659 AB464043	28633	+	BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C##BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##DQ470474|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##AK122942|HNRNPUL2-BSCL2|100534595|HNRNPUL2-BSCL2 readthrough##NM_001079559|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##DQ892842|ZBTB3|79842|zinc finger and BTB domain containing 3##EU176736|ZBTB3|79842|zinc finger and BTB domain containing 3##BC025249|ZBTB3|79842|zinc finger and BTB domain containing 3##AK027045|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_024784|ZBTB3|79842|zinc finger and BTB domain containing 3##NM_002696|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##AK312131|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##BC112162|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##BC112164|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G##U20659|POLR2G|5436|polymerase (RNA) II (DNA directed) polypeptide G	1.044733	0.01073	denovo_WM_7:1:0.314	denovo_WM_7:2:0.314	denovo_WM_7:3:0.314
chr16	89230849	89230940	reg1020182.p2	4.934	+	TSC_hg19_v1_chr16_+_89213949 AK090408	-16948	+	TSC_hg19_v1_chr16_+_89160285 BC028399 AK290963 BC064609 BC072391 AK075499	-70587	+	NM_001127214 NM_001243279 NM_174917 TSC_hg19_v1_chr16_+_89160259	-70657	+	TSC_hg19_v1_chr16_+_89238171 D83542 NM_004933 AK308596 AK308631 BC008951 DQ893277 DQ896608	7305	+	NM_001242757	35634	-	TSC_hg19_v1_chr16_+_89284112 NM_001201407 NM_182531 AK056437 AK295122	53233	+	BC028399|ACSF3|197322|acyl-CoA synthetase family member 3##AK290963|ACSF3|197322|acyl-CoA synthetase family member 3##BC064609|ACSF3|197322|acyl-CoA synthetase family member 3##BC072391|ACSF3|197322|acyl-CoA synthetase family member 3##AK075499|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001127214|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001243279|ACSF3|197322|acyl-CoA synthetase family member 3##NM_174917|ACSF3|197322|acyl-CoA synthetase family member 3##D83542|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##NM_004933|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##AK308631|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##BC008951|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##DQ893277|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##DQ896608|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##NM_001242757|SLC22A31|146429|solute carrier family 22, member 31##NM_001201407|ZNF778|197320|zinc finger protein 778##NM_182531|ZNF778|197320|zinc finger protein 778##AK056437|ZNF778|197320|zinc finger protein 778	0.0	0.0	
chr3	142995496	142995637	reg1007422.p1	4.934	+	BC067737 TSC_hg19_v1_chr3_+_142895211	-100395	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-156915	+	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	-275136	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	571701	-	NM_173552 AK315082	695086	+	TSC_hg19_v1_chr3_+_143690915 BC037293	695424	+	NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58	0.077274	0.0	
chr4	32576504	32576684	reg1012041.p1	4.934	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-1854135	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-1854400	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-1854595	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	3669443	-	AK131492 NM_001136536 AK304357 AK316523	3706652	+	BC157885 NM_001170700	3709049	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.050646	0.0	
chr5	114404714	114404864	reg1009426.p1	4.934	+	BC015371 NM_170775 BC040722	-635540	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	-706328	+	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	-706740	+	TSC_hg19_v1_chr5_-_114505606 AK316422 AK296389	100815	-	AB196558 AJ272269 BC130334 AK125426 BC045164 BC046096 NM_001017397 NM_001017398 NM_018700	111198	-	AY780790 AB590094 TSC_hg19_v1_chr5_-_114598563 NM_005023	193777	-	BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK316422|TRIM36|55521|tripartite motif containing 36##AK296389|TRIM36|55521|tripartite motif containing 36##AB196558|TRIM36|55521|tripartite motif containing 36##AJ272269|TRIM36|55521|tripartite motif containing 36##BC130334|TRIM36|55521|tripartite motif containing 36##AK125426|TRIM36|55521|tripartite motif containing 36##BC045164|TRIM36|55521|tripartite motif containing 36##BC046096|TRIM36|55521|tripartite motif containing 36##NM_001017397|TRIM36|55521|tripartite motif containing 36##NM_001017398|TRIM36|55521|tripartite motif containing 36##NM_018700|TRIM36|55521|tripartite motif containing 36##AY780790|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##NM_005023|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit	0.9813	0.0	denovo_WM_7:21:0.453	denovo_WM_7:22:0.453
chr5	73786456	73786636	reg1005843.p1	4.934	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-677196	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-864561	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-924964	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	149917	-	AK096578 NM_003633	150702	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	194462	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	1.735928	0.0	denovo_WM_7:-88:0.631
chr10	116375496	116375658	reg1009887.p2	4.933	+	TSC_hg19_v1_chr10_-_116286673 CR749819 NM_006720 AK098277	-88898	-	TSC_hg19_v1_chr10_-_116286631 AK298709 BC002448	-88975	-	CU677968 TSC_hg19_v1_chr10_-_116251632	-123970	-	AK297344 TSC_hg19_v1_chr10_-_116392101	16523	-	AF005654 NM_002313	42479	-	AB462929 TSC_hg19_v1_chr10_-_116444183 D31883	68586	-	CR749819|ABLIM1|3983|actin binding LIM protein 1##NM_006720|ABLIM1|3983|actin binding LIM protein 1##AK098277|ABLIM1|3983|actin binding LIM protein 1##AK298709|ABLIM1|3983|actin binding LIM protein 1##BC002448|ABLIM1|3983|actin binding LIM protein 1##AK297344|ABLIM1|3983|actin binding LIM protein 1##AF005654|ABLIM1|3983|actin binding LIM protein 1##NM_002313|ABLIM1|3983|actin binding LIM protein 1##D31883|ABLIM1|3983|actin binding LIM protein 1	1.100215	0.0	denovo_WM_7:4:0.589
chr12	49385448	49385591	reg1007063.p1	4.933	+	NM_005430	-13284	+	U81787 NM_003394 AK312906	-19921	-	TSC_hg19_v1_chr12_-_49351310 M74491	-34215	-	AB527129 AB018292 BC136398 BC136399 TSC_hg19_v1_chr12_-_49393076 NM_015086 BC039264	7481	-	TSC_hg19_v1_chr12_-_49412538 AK293332 NM_001206710 AK303276 AK307994 AK310250 BC000358 AK097606 NM_001206709 NM_002733	27052	-	AF010403 NM_003482	63587	-	NM_005430|WNT1|7471|wingless-type MMTV integration site family, member 1##U81787|WNT10B|7480|wingless-type MMTV integration site family, member 10B##NM_003394|WNT10B|7480|wingless-type MMTV integration site family, member 10B##AK312906|WNT10B|7480|wingless-type MMTV integration site family, member 10B##M74491|ARF3|377|ADP-ribosylation factor 3##AB018292|DDN|23109|dendrin##BC136398|DDN|23109|dendrin##BC136399|DDN|23109|dendrin##NM_015086|DDN|23109|dendrin##BC039264|DDN|23109|dendrin##AK293332|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##NM_001206710|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK303276|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK307994|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK310250|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##BC000358|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AK097606|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##NM_001206709|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##NM_002733|PRKAG1|5571|protein kinase, AMP-activated, gamma 1 non-catalytic subunit##AF010403|MLL2|8085|myeloid/lymphoid or mixed-lineage leukemia 2##NM_003482|MLL2|8085|myeloid/lymphoid or mixed-lineage leukemia 2	0.999598	0.037269	
chr15	32905984	32906133	reg1007786.p1	4.933	+	AK294229 NM_000746 NM_001190455 X70297 AK292069 AK309709 U62436 EF405802 EF405814 BC037571 EF405812 EF405813 AJ586911 AF385585 U40583 Y08420	-583315	+	TSC_hg19_v1_chr15_-_32162898 AK126002	-743115	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	-743229	-	D87717 NM_014783 NM_199357 TSC_hg19_v1_chr15_+_32907726 BC050545 BC063444 AK303025 BC039563	1704	+	NM_001144757 NM_003020 AK314965 BC093053 BC005349 Y00757	27856	+	AK095741 TSC_hg19_v1_chr15_+_33010204 AK095890 AK095972 AK312265 NM_001191322 NM_001191323 NM_013372 AY232290 AF110137 BC093778 BC101611	104199	+	AK294229|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##NM_000746|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##NM_001190455|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##X70297|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##AK292069|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##U62436|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##EF405802|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##EF405814|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##BC037571|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##EF405812|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##EF405813|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##AJ586911|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##AF385585|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##U40583|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##Y08420|CHRNA7|1139|cholinergic receptor, nicotinic, alpha 7##AK126002|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##D87717|ARHGAP11A|9824|Rho GTPase activating protein 11A##NM_014783|ARHGAP11A|9824|Rho GTPase activating protein 11A##NM_199357|ARHGAP11A|9824|Rho GTPase activating protein 11A##BC050545|ARHGAP11A|9824|Rho GTPase activating protein 11A##BC063444|ARHGAP11A|9824|Rho GTPase activating protein 11A##AK303025|ARHGAP11A|9824|Rho GTPase activating protein 11A##BC039563|ARHGAP11A|9824|Rho GTPase activating protein 11A##NM_001144757|SCG5|6447|secretogranin V (7B2 protein)##NM_003020|SCG5|6447|secretogranin V (7B2 protein)##AK314965|SCG5|6447|secretogranin V (7B2 protein)##BC093053|SCG5|6447|secretogranin V (7B2 protein)##BC005349|SCG5|6447|secretogranin V (7B2 protein)##Y00757|SCG5|6447|secretogranin V (7B2 protein)##AK095741|GREM1|26585|gremlin 1##AK095890|GREM1|26585|gremlin 1##AK095972|GREM1|26585|gremlin 1##AK312265|GREM1|26585|gremlin 1##NM_001191322|GREM1|26585|gremlin 1##NM_001191323|GREM1|26585|gremlin 1##NM_013372|GREM1|26585|gremlin 1##AY232290|GREM1|26585|gremlin 1##AF110137|GREM1|26585|gremlin 1##BC093778|GREM1|26585|gremlin 1##BC101611|GREM1|26585|gremlin 1	0.992139	0.0	
chr22	26519076	26519234	reg1009608.p2	4.933	+	TSC_hg19_v1_chr22_+_26138168 AY077700	-380971	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	-381035	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	-558209	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	46282	+	TSC_hg19_v1_chr22_+_26565455 AB023144 BC126115 BC143851 BC143854	46342	+	CR456574 CU013173 CU013461 AB041736 TSC_hg19_v1_chr22_+_26565704	46508	+	AY077700|MYO18B|84700|myosin XVIIIB##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB##BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB023144|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC126115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143851|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143854|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CR456574|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013173|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013461|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB041736|SEZ6L|23544|seizure related 6 homolog (mouse)-like	0.0	0.0	
chr7	92219809	92219932	reg1008420.p2	4.933	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-172	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-228	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-61764	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	242897	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	243350	-	AK313491 TSC_hg19_v1_chr7_-_92465884	246028	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	1.992913	0.0	denovo_WM_7:71:0.415	denovo_WM_7:72:0.284	denovo_WM_7:87:0.291	denovo_WM_7:88:0.422
chr1	174712991	174713171	reg1000321.p1	4.932	+	BC095532 NM_005684 CU688296 CU688298 BC067456 BC067457 BC067458 BC067459 BC067460 BC069460 HQ995526	-295851	+	AK095838 TSC_hg19_v1_chr1_+_174128676 AL157958	-584389	+	BC041888 NM_014857 TSC_hg19_v1_chr1_+_174128608	-584481	+	AB007940 NM_001243765	55953	+	NM_001243763 AL049701	130478	+	NM_001035230 BC012094	131588	+	BC095532|GPR52|9293|G protein-coupled receptor 52##NM_005684|GPR52|9293|G protein-coupled receptor 52##BC067456|GPR52|9293|G protein-coupled receptor 52##BC067457|GPR52|9293|G protein-coupled receptor 52##BC067458|GPR52|9293|G protein-coupled receptor 52##BC067459|GPR52|9293|G protein-coupled receptor 52##BC067460|GPR52|9293|G protein-coupled receptor 52##BC069460|GPR52|9293|G protein-coupled receptor 52##HQ995526|GPR52|9293|G protein-coupled receptor 52##AK095838|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL157958|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC041888|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_014857|RABGAP1L|9910|RAB GTPase activating protein 1-like##AB007940|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243765|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like	0.0	0.0	
chr3	196228853	196228995	reg1012624.p1	4.932	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-69591	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-69625	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-69641	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	1654	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	13289	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	66466	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	1.977665	0.0	denovo_WM_7:6:0.675	denovo_WM_7:21:0.554	denovo_WM_7:22:0.265
chr9	66968980	66969114	reg1009358.p1	4.932	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-415772	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-474851	-	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	-510551	-	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	957769	+	TSC_hg19_v1_chr9_+_68726468 AK311167	1757455	+	TSC_hg19_v1_chr9_+_69065493 AK311167	2096491	+	BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene	0.996044	0.0	denovo_WM_7:-11:0.315	denovo_WM_7:-12:0.315	denovo_WM_7:-13:0.315
chr10	34084661	34084751	reg1007831.p2	4.931	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-460708	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-460892	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-461253	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	1019445	-	AK310225 AK300491 NM_001198778 NM_001198779	1278506	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	1294566	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.395563	0.0	
chr12	777000	777180	reg1009336.p1	4.931	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-4375	-	TSC_hg19_v1_chr12_-_752800 AK298043	-24271	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-24912	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	85066	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	85666	+	BC013629 TSC_hg19_v1_chr12_+_1017145	239992	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.999607	0.0	
chr2	109069040	109069147	reg1007525.p1	4.931	+	TSC_hg19_v1_chr2_+_109065677 AF432211 AB002334 BC146789	-3408	+	NM_181453 BC037774 TSC_hg19_v1_chr2_+_109065661	-3473	+	BC058861 NM_006588 AK298755 AF055584 AK297851 BC125043	-74590	+	TSC_hg19_v1_chr2_-_109150636 BC004487 AK095987	81552	-	TSC_hg19_v1_chr2_+_109150916 NM_001193483 AK296992 AF527761	81772	+	TSC_hg19_v1_chr2_+_109150925 AK314217	81850	+	AF432211|GCC2|9648|GRIP and coiled-coil domain containing 2##AB002334|GCC2|9648|GRIP and coiled-coil domain containing 2##BC146789|GCC2|9648|GRIP and coiled-coil domain containing 2##NM_181453|GCC2|9648|GRIP and coiled-coil domain containing 2##BC037774|GCC2|9648|GRIP and coiled-coil domain containing 2##BC058861|SULT1C4|27233|sulfotransferase family, cytosolic, 1C, member 4##NM_006588|SULT1C4|27233|sulfotransferase family, cytosolic, 1C, member 4##AK298755|SULT1C4|27233|sulfotransferase family, cytosolic, 1C, member 4##AK297851|SULT1C4|27233|sulfotransferase family, cytosolic, 1C, member 4##BC125043|SULT1C4|27233|sulfotransferase family, cytosolic, 1C, member 4##BC004487|FLJ38668|644903|uncharacterized LOC644903##AK095987|FLJ38668|644903|uncharacterized LOC644903##NM_001193483|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK296992|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527761|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK314217|LIMS1|3987|LIM and senescent cell antigen-like domains 1	1.897719	0.0	denovo_WM_7:46:0.637	denovo_WM_7:68:0.242
chr7	72934523	72934647	reg1009848.p1	4.931	+	NM_003508 BC026333	-86475	+	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	-192293	+	AK057366 AY081948 AY081949 NM_178125	-192501	-	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	1898	-	TSC_hg19_v1_chr7_-_72936538 AF084479	1964	-	TSC_hg19_v1_chr7_-_72936624 AB032253 AF072810 NM_032408	2030	-	NM_003508|FZD9|8326|frizzled family receptor 9##BC026333|FZD9|8326|frizzled family receptor 9##NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AB032253|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF072810|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##NM_032408|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B	0.999414	0.0	
chr8	8610510	8610603	reg1009288.p1	4.931	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	-50858	+	AK122582 NM_001080826	-371334	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-434668	-	TSC_hg19_v1_chr8_-_8751060 NM_004225	140382	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	249809	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	249949	+	AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1	0.968872	0.0	denovo_WM_7:-34:0.331	denovo_WM_7:-38:0.482
chr9	70851061	70851192	reg1011630.p2	4.931	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-360950	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-360976	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-360986	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	5766	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	66698	+	BC033073 NM_021965	120688	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.494106	0.0	denovo_WM_7:18:0.452
chrX	10737316	10737424	reg1008388.p1	4.931	+	AF041206 NM_001098624 AK299061	-91614	-	AF230976 AF230977 Y13667 AK226104 AK315095 BC053626 AK291215 TSC_hg19_v1_chrX_-_10588583 AY112901 AK297205 NM_000381 NM_033289	-148805	-	AF035360 NM_001193277 AY112903	-192466	-	NM_033290	114438	-	NM_001122608 NM_001171991 NM_005333 AK097815 TSC_hg19_v1_chrX_+_11129447 CR749578	392060	+	TSC_hg19_v1_chrX_+_11129467 BC001691 BC095455 U36787	392099	+	AF041206|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001098624|MID1|4281|midline 1 (Opitz/BBB syndrome)##AK299061|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF230976|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF230977|MID1|4281|midline 1 (Opitz/BBB syndrome)##Y13667|MID1|4281|midline 1 (Opitz/BBB syndrome)##AK226104|MID1|4281|midline 1 (Opitz/BBB syndrome)##AK315095|MID1|4281|midline 1 (Opitz/BBB syndrome)##BC053626|MID1|4281|midline 1 (Opitz/BBB syndrome)##AK291215|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112901|MID1|4281|midline 1 (Opitz/BBB syndrome)##AK297205|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_000381|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_033289|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_033290|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001122608|HCCS|3052|holocytochrome c synthase##NM_001171991|HCCS|3052|holocytochrome c synthase##NM_005333|HCCS|3052|holocytochrome c synthase##AK097815|HCCS|3052|holocytochrome c synthase##CR749578|HCCS|3052|holocytochrome c synthase##BC001691|HCCS|3052|holocytochrome c synthase##BC095455|HCCS|3052|holocytochrome c synthase##U36787|HCCS|3052|holocytochrome c synthase	1.859664	0.997162	denovo_WM_7:-20:0.982	CTCF.p2:30:0.997	denovo_WM_7:-41:0.226	denovo_WM_7:-53:0.226
chr13	110768765	110768945	reg1001820.p2	4.930	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	-329947	-	AB290159 AK127806 NM_001198950	-1487286	+	AB020672 BC146791 NM_015011 AL834447	-1520341	+	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	33880	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	190654	-	TSC_hg19_v1_chr13_+_110959631 AK294920 NM_001846 X05562	190766	+	NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1##AK294920|COL4A2|1284|collagen, type IV, alpha 2##NM_001846|COL4A2|1284|collagen, type IV, alpha 2##X05562|COL4A2|1284|collagen, type IV, alpha 2	0.999617	0.0	
chr16	53098237	53098354	reg1009780.p2	4.930	+	TSC_hg19_v1_chr16_+_53088951 AY647157 BC022889 NM_025134	-9414	+	AK299202 NM_001146188	-516582	-	NM_001080430	-517490	-	TSC_hg19_v1_chr16_+_53133091 AK092208 AX747409 BC033770	34804	+	TSC_hg19_v1_chr16_+_53164923 DQ333316	66765	+	NM_001207030	306745	-	AY647157|CHD9|80205|chromodomain helicase DNA binding protein 9##BC022889|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_025134|CHD9|80205|chromodomain helicase DNA binding protein 9##AK299202|TOX3|27324|TOX high mobility group box family member 3##NM_001146188|TOX3|27324|TOX high mobility group box family member 3##NM_001080430|TOX3|27324|TOX high mobility group box family member 3##AK092208|CHD9|80205|chromodomain helicase DNA binding protein 9##BC033770|CHD9|80205|chromodomain helicase DNA binding protein 9##DQ333316|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_001207030|LOC643802|643802|u3 small nucleolar ribonucleoprotein protein MPP10-like	0.0	0.0	
chr22	26959196	26959296	reg1009958.p2	4.930	+	TSC_hg19_v1_chr22_+_26908507 AK057443	-50753	+	TSC_hg19_v1_chr22_-_26908440 AK025443 AK299964 BC011599 BC033080 AL080147 NM_001008697 NM_012143 AK298303 AL050258	-50853	-	TSC_hg19_v1_chr22_+_26879842 BC066962 AK293916 NM_001013694	-79416	+	AK075139 NM_001008566	2105	-	TSC_hg19_v1_chr22_-_26986052 AF049891 BC017509	26805	-	TSC_hg19_v1_chr22_-_26986070 AK304545 BC001057 AL136623	26821	-	AK025443|TFIP11|24144|tuftelin interacting protein 11##AK299964|TFIP11|24144|tuftelin interacting protein 11##BC011599|TFIP11|24144|tuftelin interacting protein 11##BC033080|TFIP11|24144|tuftelin interacting protein 11##AL080147|TFIP11|24144|tuftelin interacting protein 11##NM_001008697|TFIP11|24144|tuftelin interacting protein 11##NM_012143|TFIP11|24144|tuftelin interacting protein 11##AK298303|TFIP11|24144|tuftelin interacting protein 11##AL050258|TFIP11|24144|tuftelin interacting protein 11##BC066962|SRRD|402055|SRR1 domain containing##AK293916|SRRD|402055|SRR1 domain containing##NM_001013694|SRRD|402055|SRR1 domain containing##AK075139|TPST2|8459|tyrosylprotein sulfotransferase 2##NM_001008566|TPST2|8459|tyrosylprotein sulfotransferase 2##AF049891|TPST2|8459|tyrosylprotein sulfotransferase 2##BC017509|TPST2|8459|tyrosylprotein sulfotransferase 2##AK304545|TPST2|8459|tyrosylprotein sulfotransferase 2##BC001057|TPST2|8459|tyrosylprotein sulfotransferase 2##AL136623|TPST2|8459|tyrosylprotein sulfotransferase 2	0.998589	0.983496	CTCF.p2:-27:0.983	denovo_WM_7:59:0.295	denovo_WM_7:60:0.295	denovo_WM_7:61:0.295
chr11	36331508	36331602	reg1010881.p1	4.929	+	NM_001160167 AK055042	-13775	+	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	-20569	-	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	-20602	-	NM_001160168 NM_024841 BX640959 AK024275	66005	+	NM_001160169	90991	+	TSC_hg19_v1_chr11_-_36531820 U78798 BC031052 AK292978 NM_004620 NM_145803	200259	-	NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##NM_001160168|PRR5L|79899|proline rich 5 like##NM_024841|PRR5L|79899|proline rich 5 like##BX640959|PRR5L|79899|proline rich 5 like##AK024275|PRR5L|79899|proline rich 5 like##NM_001160169|PRR5L|79899|proline rich 5 like##U78798|TRAF6|7189|TNF receptor-associated factor 6##BC031052|TRAF6|7189|TNF receptor-associated factor 6##AK292978|TRAF6|7189|TNF receptor-associated factor 6##NM_004620|TRAF6|7189|TNF receptor-associated factor 6##NM_145803|TRAF6|7189|TNF receptor-associated factor 6	0.0	0.0	
chr1	43425364	43425465	reg1012746.p2	4.929	+	TSC_hg19_v1_chr1_-_43424834 NM_006516	-574	-	TSC_hg19_v1_chr1_-_43424540 AK292791 AK293306 AK296736 AK312403 AB208987	-842	-	AB384810 BC118590 BC121804 TSC_hg19_v1_chr1_-_43424504 K03195	-992	-	NM_001101376	188179	+	AB451256 AB451381 BT006920 CR456975 CU679257 TSC_hg19_v1_chr1_-_43637951 BC009175 U86602 AK307440	212457	-	TSC_hg19_v1_chr1_-_43637958 AK223455	212548	-	NM_006516|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK292791|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK293306|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK296736|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK312403|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AB208987|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##BC118590|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##BC121804|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##K03195|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##NM_001101376|FAM183A|440585|family with sequence similarity 183, member A##AB451256|EBNA1BP2|10969|EBNA1 binding protein 2##AB451381|EBNA1BP2|10969|EBNA1 binding protein 2##BT006920|EBNA1BP2|10969|EBNA1 binding protein 2##CR456975|EBNA1BP2|10969|EBNA1 binding protein 2##BC009175|EBNA1BP2|10969|EBNA1 binding protein 2##U86602|EBNA1BP2|10969|EBNA1 binding protein 2##AK307440|EBNA1BP2|10969|EBNA1 binding protein 2##AK223455|EBNA1BP2|10969|EBNA1 binding protein 2	1.393512	0.0	denovo_WM_7:0:0.420	denovo_WM_7:18:0.683
chr3	185301011	185301077	reg1011331.p1	4.929	+	CU687970 TSC_hg19_v1_chr3_-_185270374 AK298380 AY036912 AY093498 EF186228 EF186229 BC064941 AK122651 NM_139248	-30716	-	TSC_hg19_v1_chr3_-_185216824 EU831805 EU831882 AK313954 BC019884 BC008043 BX647928 AY358547 AK172748 AK290878 NM_080652	-84345	-	BC026249 NM_004721 AK296961 AB001872 BC111726	-220112	+	AK304402 TSC_hg19_v1_chr3_+_185304106 AF151697 NM_021627 AK296772 AK027599 AK296744 BC040609 CU691906 AB037752 AB385449 AL834380	3039	+	CU676908 DQ892161 EU176689 TSC_hg19_v1_chr3_-_185542803 AK309611 AF117107 BC012322	241730	-	TSC_hg19_v1_chr3_-_185542828 BC021290 AK290664 NM_001007225 NM_006548	241787	-	AK298380|LIPH|200879|lipase, member H##AY036912|LIPH|200879|lipase, member H##AY093498|LIPH|200879|lipase, member H##EF186228|LIPH|200879|lipase, member H##EF186229|LIPH|200879|lipase, member H##BC064941|LIPH|200879|lipase, member H##AK122651|LIPH|200879|lipase, member H##NM_139248|LIPH|200879|lipase, member H##EU831805|TMEM41A|90407|transmembrane protein 41A##EU831882|TMEM41A|90407|transmembrane protein 41A##AK313954|TMEM41A|90407|transmembrane protein 41A##BC019884|TMEM41A|90407|transmembrane protein 41A##BC008043|TMEM41A|90407|transmembrane protein 41A##BX647928|TMEM41A|90407|transmembrane protein 41A##AY358547|TMEM41A|90407|transmembrane protein 41A##AK172748|TMEM41A|90407|transmembrane protein 41A##AK290878|TMEM41A|90407|transmembrane protein 41A##NM_080652|TMEM41A|90407|transmembrane protein 41A##NM_004721|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK296961|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AB001872|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##BC111726|MAP3K13|9175|mitogen-activated protein kinase kinase kinase 13##AK304402|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AF151697|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##NM_021627|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296772|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK027599|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AK296744|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##BC040609|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##AL834380|SENP2|59343|SUMO1/sentrin/SMT3 specific peptidase 2##DQ892161|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##EU176689|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK309611|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AF117107|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##BC021290|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##AK290664|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##NM_001007225|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2##NM_006548|IGF2BP2|10644|insulin-like growth factor 2 mRNA binding protein 2	0.0	0.0	
chr4	87899212	87899362	reg1007582.p2	4.929	+	TSC_hg19_v1_chr4_+_87857481 L13743	-41804	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-43072	+	BC016746 BC063410 NM_144645	-85727	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	29034	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	68964	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	242375	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	0.999617	0.0	
chr5	118611246	118611419	reg1007368.p1	4.929	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-6815	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-6874	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-204167	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	80286	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	80406	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	176864	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.0	0.0	
chr6	166620220	166620400	reg1009329.p2	4.929	+	BC098425 NM_003181	-38181	-	BC008632 BC039614 TSC_hg19_v1_chr6_-_166401541 BX647106	-218776	-	TSC_hg19_v1_chr6_-_166401424 AK289375	-218877	-	BC034775 NM_175922 TSC_hg19_v1_chr6_-_166721880	101566	-	BC018969 NM_145169 TSC_hg19_v1_chr6_-_166756020	135697	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	135724	-	BC098425|T|6862|T, brachyury homolog (mouse)##NM_003181|T|6862|T, brachyury homolog (mouse)##BC008632|LINC00473|90632|long intergenic non-protein coding RNA 473##BC039614|LINC00473|90632|long intergenic non-protein coding RNA 473##AK289375|LINC00473|90632|long intergenic non-protein coding RNA 473##BC034775|PRR18|285800|proline rich 18##NM_175922|PRR18|285800|proline rich 18##BC018969|SFT2D1|113402|SFT2 domain containing 1##NM_145169|SFT2D1|113402|SFT2 domain containing 1##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1	0.999253	0.0	
chr6_ssto_hap7	1028234	1028353	reg1013728.p1	4.929	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.972757	0.0	denovo_WM_7:20:0.942
chr7	101386777	101386908	reg1011743.p1	4.929	+	BC002778 NM_138403	-114267	-	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-380625	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-421804	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	72367	+	M74099 NM_181552	74039	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	541555	+	BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_020979|SH2B2|10603|SH2B adaptor protein 2	0.0	0.0	
chr8	101398425	101398597	reg1006100.p1	4.929	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-76226	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-76330	-	AB271913 AB271914 AB029316 NM_015435	-83040	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	173429	-	AK093906 AX748361 NM_152628	263381	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	335295	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	0.0	0.0	
chrX	130868038	130868104	reg1000000.p1	4.929	+	BC137050 AB529233 NM_001004486	-190073	+	TSC_hg19_v1_chrX_-_130423393 NM_001170961 NM_001170962 NM_001555 NM_205833	-444659	-	Y10523 AK057916 BC063884 AF034198 TSC_hg19_v1_chrX_-_130423274 AB058894 AK226008 AK307871	-444809	-	TSC_hg19_v1_chrX_-_130964633 AK097911	96580	-	TSC_hg19_v1_chrX_+_131157329 NM_001042453 NM_016542 AB040057 AK075150 AK303583 AK316137 AK314356 BC070056 AK075107 BC098315 BC099737 BC099843 BC103503 BC017213 AF231012	289250	+	AF344882 AF344883 NM_001042452 AB527620 EU832781 GQ129321 BT020099	289569	+	BC137050|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001004486|OR13H1|347468|olfactory receptor, family 13, subfamily H, member 1##NM_001170961|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001170962|IGSF1|3547|immunoglobulin superfamily, member 1##NM_001555|IGSF1|3547|immunoglobulin superfamily, member 1##NM_205833|IGSF1|3547|immunoglobulin superfamily, member 1##Y10523|IGSF1|3547|immunoglobulin superfamily, member 1##AK057916|IGSF1|3547|immunoglobulin superfamily, member 1##BC063884|IGSF1|3547|immunoglobulin superfamily, member 1##AF034198|IGSF1|3547|immunoglobulin superfamily, member 1##AB058894|IGSF1|3547|immunoglobulin superfamily, member 1##AK226008|IGSF1|3547|immunoglobulin superfamily, member 1##AK307871|IGSF1|3547|immunoglobulin superfamily, member 1##AK097911|LOC286467|286467|family with sequence similarity 195, member A pseudogene##NM_001042453|MST4|51765|serine/threonine protein kinase MST4##NM_016542|MST4|51765|serine/threonine protein kinase MST4##AB040057|MST4|51765|serine/threonine protein kinase MST4##AK075150|MST4|51765|serine/threonine protein kinase MST4##AK303583|MST4|51765|serine/threonine protein kinase MST4##AK316137|MST4|51765|serine/threonine protein kinase MST4##AK314356|MST4|51765|serine/threonine protein kinase MST4##BC070056|MST4|51765|serine/threonine protein kinase MST4##AK075107|MST4|51765|serine/threonine protein kinase MST4##BC098315|MST4|51765|serine/threonine protein kinase MST4##BC099737|MST4|51765|serine/threonine protein kinase MST4##BC099843|MST4|51765|serine/threonine protein kinase MST4##BC103503|MST4|51765|serine/threonine protein kinase MST4##BC017213|MST4|51765|serine/threonine protein kinase MST4##AF231012|MST4|51765|serine/threonine protein kinase MST4##AF344882|MST4|51765|serine/threonine protein kinase MST4##AF344883|MST4|51765|serine/threonine protein kinase MST4##NM_001042452|MST4|51765|serine/threonine protein kinase MST4##EU832781|MST4|51765|serine/threonine protein kinase MST4##GQ129321|MST4|51765|serine/threonine protein kinase MST4##BT020099|MST4|51765|serine/threonine protein kinase MST4	0.449941	0.0	
chr6	131107082	131107208	reg1006429.p1	4.928	+	AB052099 NM_052913	-348884	+	AK091882 AX747235 NM_001017373	-563047	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	-570690	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	41417	+	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	184406	-	CR749262 CR936793 NM_001252660	214742	-	AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2	2.464402	0.0	denovo_WM_7:3:0.214	denovo_WM_7:4:0.249	denovo_WM_7:-15:0.213	denovo_WM_7:-16:0.248	denovo_WM_7:98:0.288
chr11	43439857	43440037	reg1011049.p2	4.927	+	TSC_hg19_v1_chr11_+_43380492 AK001752 BC017238 BC033000	-59455	+	TSC_hg19_v1_chr11_+_43380403 NM_018259	-59529	+	AK293303 TSC_hg19_v1_chr11_+_43333603 DQ890671 DQ893852 BT007093	-106307	+	TSC_hg19_v1_chr11_+_43665785 AK095484	225837	+	NM_016142 TSC_hg19_v1_chr11_+_43702287 AK027882 AK075011 AK292625 AK075216 AK074952 AF078850 BC012043 AK222881 AK301663 BC012536 EU176708	262311	+	TSC_hg19_v1_chr11_+_43902380 NM_139178 AK315266 AB042029 BC067257	462446	+	AK001752|TTC17|55761|tetratricopeptide repeat domain 17##BC017238|TTC17|55761|tetratricopeptide repeat domain 17##BC033000|TTC17|55761|tetratricopeptide repeat domain 17##NM_018259|TTC17|55761|tetratricopeptide repeat domain 17##AK293303|API5|8539|apoptosis inhibitor 5##DQ890671|API5|8539|apoptosis inhibitor 5##DQ893852|API5|8539|apoptosis inhibitor 5##BT007093|API5|8539|apoptosis inhibitor 5##NM_016142|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK027882|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK075011|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK292625|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK075216|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK074952|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AF078850|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##BC012043|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK222881|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK301663|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##BC012536|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##EU176708|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##NM_139178|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##AK315266|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##AB042029|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##BC067257|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)	0.0	0.0	
chr1	169662385	169662479	reg1006729.p2	4.927	+	M25322 AK312884 BC068533 NM_003005	-63070	-	TSC_hg19_v1_chr1_-_169555717 AK291613 AK300469 NM_000130	-106693	-	AB385005 AK226079 M14335 TSC_hg19_v1_chr1_-_169555700 M16967	-106768	-	AB528958 CU676702 DQ891376 DQ894554 AJ246000 X16150 X17519 BC020758 X16070 AK225713 AK312673 M25280 TSC_hg19_v1_chr1_-_169680762 NM_000655	18327	-	BC131551 M24736 M30640 BC142677 BC142711 AK314214 NM_000450 TSC_hg19_v1_chr1_-_169703221	40767	-	AL035369 NM_033418 AK313909	101600	-	M25322|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##AK312884|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##BC068533|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##NM_003005|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##AK291613|F5|2153|coagulation factor V (proaccelerin, labile factor)##AK300469|F5|2153|coagulation factor V (proaccelerin, labile factor)##NM_000130|F5|2153|coagulation factor V (proaccelerin, labile factor)##AK226079|F5|2153|coagulation factor V (proaccelerin, labile factor)##M14335|F5|2153|coagulation factor V (proaccelerin, labile factor)##M16967|F5|2153|coagulation factor V (proaccelerin, labile factor)##DQ891376|SELL|6402|selectin L##DQ894554|SELL|6402|selectin L##AJ246000|SELL|6402|selectin L##X16150|SELL|6402|selectin L##X17519|SELL|6402|selectin L##BC020758|SELL|6402|selectin L##X16070|SELL|6402|selectin L##AK225713|SELL|6402|selectin L##AK312673|SELL|6402|selectin L##M25280|SELL|6402|selectin L##NM_000655|SELL|6402|selectin L##BC131551|SELE|6401|selectin E##M24736|SELE|6401|selectin E##M30640|SELE|6401|selectin E##BC142677|SELE|6401|selectin E##BC142711|SELE|6401|selectin E##AK314214|SELE|6401|selectin E##NM_000450|SELE|6401|selectin E##AL035369|METTL18|92342|methyltransferase like 18##NM_033418|METTL18|92342|methyltransferase like 18##AK313909|METTL18|92342|methyltransferase like 18	0.066151	0.0	
chr2	136894169	136894276	reg1010421.p2	4.927	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-18546	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-20424	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-151006	-	TSC_hg19_v1_chr2_+_137523114 AK299929	628894	+	NM_001080427	854239	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1827712	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	0.191641	0.0	
chr4	80979799	80979971	reg1009152.p1	4.927	+	CU688758 DQ891321 DQ894505 BC058888 AK312768 BC029820 BC048274 X78712 NM_033214 AK292241 BC027598	-650518	-	BC063623 BC080651 BC004552 NM_032693	-732724	-	AK055774 BX648346 CU689134 AY424281 BC029604 TSC_hg19_v1_chr4_-_79860593 BC031256 BC047510 AK291232 NM_001040202 AX775925	-1119403	-	AB527650 AY233452 TSC_hg19_v1_chr4_-_80993874 AY040326 BC114374 AB209913	14003	-	TSC_hg19_v1_chr4_-_80994237 AK091721 AX747144	14352	-	TSC_hg19_v1_chr4_-_80994394 NM_001145794 NM_058172 BC107876	14582	-	DQ891321|GK2|2712|glycerol kinase 2##DQ894505|GK2|2712|glycerol kinase 2##BC058888|GK2|2712|glycerol kinase 2##BC029820|GK2|2712|glycerol kinase 2##BC048274|GK2|2712|glycerol kinase 2##X78712|GK2|2712|glycerol kinase 2##NM_033214|GK2|2712|glycerol kinase 2##AK292241|GK2|2712|glycerol kinase 2##BC027598|GK2|2712|glycerol kinase 2##BC063623|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC080651|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC004552|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##NM_032693|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##AK055774|PAQR3|152559|progestin and adipoQ receptor family member III##BX648346|PAQR3|152559|progestin and adipoQ receptor family member III##AY424281|PAQR3|152559|progestin and adipoQ receptor family member III##BC029604|PAQR3|152559|progestin and adipoQ receptor family member III##BC031256|PAQR3|152559|progestin and adipoQ receptor family member III##BC047510|PAQR3|152559|progestin and adipoQ receptor family member III##AK291232|PAQR3|152559|progestin and adipoQ receptor family member III##NM_001040202|PAQR3|152559|progestin and adipoQ receptor family member III##AX775925|PAQR3|152559|progestin and adipoQ receptor family member III##AY233452|ANTXR2|118429|anthrax toxin receptor 2##AY040326|ANTXR2|118429|anthrax toxin receptor 2##BC114374|ANTXR2|118429|anthrax toxin receptor 2##AB209913|ANTXR2|118429|anthrax toxin receptor 2##NM_001145794|ANTXR2|118429|anthrax toxin receptor 2##NM_058172|ANTXR2|118429|anthrax toxin receptor 2##BC107876|ANTXR2|118429|anthrax toxin receptor 2	0.0	0.0	
chr6	106074781	106074895	reg1009380.p1	4.927	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-223843	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-223880	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-223992	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	459358	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	459397	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	471966	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.0	0.0	
chr6	57217513	57217647	reg1012042.p1	4.926	+	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-35165	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-130509	-	AB034244 AK313796 NM_183227	-131350	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	1070099	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	5778421	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	6812284	-	BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AB034244|RAB23|51715|RAB23, member RAS oncogene family##AK313796|RAB23|51715|RAB23, member RAS oncogene family##NM_183227|RAB23|51715|RAB23, member RAS oncogene family##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	0.845792	0.0	denovo_WM_7:-50:0.316	denovo_WM_7:-52:0.470
chr12	94275095	94275236	reg1009716.p1	4.924	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-203982	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-309564	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-310345	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	267339	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	578366	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	578477	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	0.366367	0.0	denovo_WM_7:103:0.319
chr19	6539999	6540179	reg1010436.p1	4.924	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-9063	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-37772	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-58306	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	50943	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	51017	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	51069	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.998638	0.0	
chr2	82566981	82567112	reg1010395.p2	4.924	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-2035203	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-2035321	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-2035521	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	2119324	-	AK296741 TSC_hg19_v1_chr2_-_84686396	2119349	-	NM_003849	2119539	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.0	0.0	
chr5	90616684	90616799	reg1014835.p1	4.924	+	AK091866 TSC_hg19_v1_chr5_-_90610220	-6496	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-762127	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-791375	-	TSC_hg19_v1_chr5_+_90676181 BC043415	59421	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	62391	-	AK311143 BC042879 TSC_hg19_v1_chr5_-_92916977 BC010610 BC018089 AK095719	2300222	-	AK091866|LOC100505994|100505994|uncharacterized LOC100505994##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3##AK311143|FLJ42709|441094|uncharacterized LOC441094##BC042879|FLJ42709|441094|uncharacterized LOC441094##BC010610|FLJ42709|441094|uncharacterized LOC441094##BC018089|FLJ42709|441094|uncharacterized LOC441094##AK095719|FLJ42709|441094|uncharacterized LOC441094	0.973571	0.0	denovo_WM_7:60:0.656
chrX	49046561	49046688	reg1011544.p1	4.924	+	TSC_hg19_v1_chrX_-_49042854 AK299407	-3770	-	TSC_hg19_v1_chrX_-_49042840 BT007423 CR457211 DQ891474 DQ894662 AB464065 AJ011654 NM_006150 AK300866 AK314788 BC002468 BC016856	-3834	-	NM_002668 TSC_hg19_v1_chrX_+_49028254 L09604 BC109066 AB591027	-18361	+	TSC_hg19_v1_chrX_+_49047887 CU687901	1266	+	TSC_hg19_v1_chrX_-_49056653 AB464258 CU687900 AK313030 AK094376 AK295524 AK315953 BC064550 NM_003179	10058	-	AF067227 JF701915 AF201304 AJ224874 NM_005183	43177	-	AK299407|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BT007423|PRICKLE3|4007|prickle homolog 3 (Drosophila)##CR457211|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ891474|PRICKLE3|4007|prickle homolog 3 (Drosophila)##DQ894662|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AJ011654|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_006150|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK300866|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AK314788|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC002468|PRICKLE3|4007|prickle homolog 3 (Drosophila)##BC016856|PRICKLE3|4007|prickle homolog 3 (Drosophila)##NM_002668|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##L09604|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##BC109066|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##AK313030|SYP|6855|synaptophysin##AK094376|SYP|6855|synaptophysin##AK295524|SYP|6855|synaptophysin##AK315953|SYP|6855|synaptophysin##BC064550|SYP|6855|synaptophysin##NM_003179|SYP|6855|synaptophysin##AF067227|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##JF701915|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AF201304|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AJ224874|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_005183|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit	0.983439	0.021328	denovo_WM_7:12:0.799
chr20	30273205	30273347	reg1011574.p1	4.923	+	AF257180 NM_032609 BC057779	-47574	+	TSC_hg19_v1_chr20_+_30193091 NM_002165 NM_181353 AK313786 BC012420 BC000613 S78986 X77956 AK291152 D13889 D13890 S78825 AB463776 CU680316 DQ891293 DQ893342 DQ894477 DQ896657 EU176458 EU176468 EU176808 BT007443	-80140	+	TSC_hg19_v1_chr20_+_30135200 BC053868	-138042	+	BC032024 TSC_hg19_v1_chr20_-_30288101	14821	-	TSC_hg19_v1_chr20_-_30310672 AY263336 BC019307 NM_001191 NM_138578 AK290968 AY263335 CR936637	37390	-	TSC_hg19_v1_chr20_-_30311772 BX647525	38464	-	AF257180|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##NM_032609|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##BC057779|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##NM_002165|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##NM_181353|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##AK313786|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##BC012420|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##BC000613|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##S78986|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##X77956|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##AK291152|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##D13889|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##D13890|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##S78825|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ891293|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ893342|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ894477|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ896657|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##EU176458|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##EU176468|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##EU176808|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##BT007443|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##AY263336|BCL2L1|598|BCL2-like 1##BC019307|BCL2L1|598|BCL2-like 1##NM_001191|BCL2L1|598|BCL2-like 1##NM_138578|BCL2L1|598|BCL2-like 1##AK290968|BCL2L1|598|BCL2-like 1##AY263335|BCL2L1|598|BCL2-like 1##CR936637|BCL2L1|598|BCL2-like 1##BX647525|BCL2L1|598|BCL2-like 1	1.004728	0.0	denovo_WM_7:-65:0.924
chr22	50966148	50966308	reg1006753.p1	4.923	+	TSC_hg19_v1_chr22_-_50964861 NM_001169109	-1349	-	NM_001169110	-1655	-	BC102024 BC102025 AL021683 TSC_hg19_v1_chr22_-_50964031 NM_001169111 NM_005138	-2222	-	DQ891456 DQ894634 TSC_hg19_v1_chr22_-_50968202 M63193 NM_001113756	1969	-	TSC_hg19_v1_chr22_-_50968442 BC018160 BC052211 AK057214 AK298691 AK301194 AK314716 AK225269	2213	-	TSC_hg19_v1_chr22_-_50968479 NM_001113755 NM_001953	2268	-	NM_001169109|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##NM_001169110|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##BC102024|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##BC102025|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##AL021683|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##NM_001169111|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##NM_005138|SCO2|9997|SCO cytochrome oxidase deficient homolog 2 (yeast)##DQ891456|TYMP|1890|thymidine phosphorylase##DQ894634|TYMP|1890|thymidine phosphorylase##M63193|TYMP|1890|thymidine phosphorylase##NM_001113756|TYMP|1890|thymidine phosphorylase##BC018160|TYMP|1890|thymidine phosphorylase##BC052211|TYMP|1890|thymidine phosphorylase##AK057214|TYMP|1890|thymidine phosphorylase##AK298691|TYMP|1890|thymidine phosphorylase##AK301194|TYMP|1890|thymidine phosphorylase##AK314716|TYMP|1890|thymidine phosphorylase##AK225269|TYMP|1890|thymidine phosphorylase##NM_001113755|TYMP|1890|thymidine phosphorylase##NM_001953|TYMP|1890|thymidine phosphorylase	0.990143	0.0	
chr5	83558391	83558556	reg1009573.p2	4.923	+	AK313713 NM_001884 X17405 X78076 X78075	-541539	-	NM_001126336 NM_001164097 NM_001164098 NM_004385 TSC_hg19_v1_chr5_+_82767562 U16306 U26555 X15998 AK307642 AB209491 BC050524 D32039	-790856	+	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	-1185090	+	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	121773	-	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	122191	-	TSC_hg19_v1_chr5_+_85913757 AK026505	2355285	+	AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001126336|VCAN|1462|versican##NM_001164097|VCAN|1462|versican##NM_001164098|VCAN|1462|versican##NM_004385|VCAN|1462|versican##U16306|VCAN|1462|versican##U26555|VCAN|1462|versican##X15998|VCAN|1462|versican##AK307642|VCAN|1462|versican##AB209491|VCAN|1462|versican##BC050524|VCAN|1462|versican##D32039|VCAN|1462|versican##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc	1.987624	0.0	denovo_WM_7:11:0.971	denovo_WM_7:26:0.981
chr6	52272348	52272462	reg1005139.p1	4.923	+	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	-45448	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-122826	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-122885	-	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	12673	+	AK297632 NM_001172420	13399	+	DQ891068 DQ894250 D31762 TSC_hg19_v1_chr6_-_52441798	169353	-	NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ891068|TRAM2|9697|translocation associated membrane protein 2##DQ894250|TRAM2|9697|translocation associated membrane protein 2##D31762|TRAM2|9697|translocation associated membrane protein 2	1.993609	0.219376	CTCF.p2:-21:0.219
chr9	67029840	67030017	reg1007289.p1	4.923	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-476653	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-535732	-	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	-571432	-	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	896888	+	TSC_hg19_v1_chr9_+_68726468 AK311167	1696574	+	TSC_hg19_v1_chr9_+_69065493 AK311167	2035610	+	BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene	0.996888	0.0	
chr15	34354233	34354364	reg1010050.p2	4.922	+	TSC_hg19_v1_chr15_-_34331329 BC063533 AF283508 BC010488 NM_020371	-22986	-	AK095198 NM_012125	-93210	+	TSC_hg19_v1_chr15_-_34212524 BC037796	-141740	-	BC012456 TSC_hg19_v1_chr15_-_34394064 AJ250344 NM_020154 AY358445	39743	-	TSC_hg19_v1_chr15_-_34394073 AJ245874 AK314883 BC104934 BC104936	39805	-	AK057200 NM_152595 BC130441	39983	+	BC063533|AVEN|57099|apoptosis, caspase activation inhibitor##AF283508|AVEN|57099|apoptosis, caspase activation inhibitor##BC010488|AVEN|57099|apoptosis, caspase activation inhibitor##NM_020371|AVEN|57099|apoptosis, caspase activation inhibitor##AK095198|CHRM5|1133|cholinergic receptor, muscarinic 5##NM_012125|CHRM5|1133|cholinergic receptor, muscarinic 5##BC012456|C15orf24|56851|chromosome 15 open reading frame 24##AJ250344|C15orf24|56851|chromosome 15 open reading frame 24##NM_020154|C15orf24|56851|chromosome 15 open reading frame 24##AY358445|C15orf24|56851|chromosome 15 open reading frame 24##AJ245874|C15orf24|56851|chromosome 15 open reading frame 24##AK314883|C15orf24|56851|chromosome 15 open reading frame 24##BC104934|C15orf24|56851|chromosome 15 open reading frame 24##BC104936|C15orf24|56851|chromosome 15 open reading frame 24##AK057200|PGBD4|161779|piggyBac transposable element derived 4##NM_152595|PGBD4|161779|piggyBac transposable element derived 4##BC130441|PGBD4|161779|piggyBac transposable element derived 4	0.0	0.998705	CTCF.p2:12:0.999
chr17	38759229	38759344	reg1007194.p1	4.922	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-37568	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-101440	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-159467	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	44784	-	BC069196 TSC_hg19_v1_chr17_-_38804818	45510	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	62064	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	0.0	0.0	
chr5	160270196	160270376	reg1000546.p1	4.922	+	AK025130 TSC_hg19_v1_chr5_-_160112393	-157947	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-421383	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-421432	+	AB018258 AK295081 AK090832 AX746642 NM_025153	8845	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	704840	-	NM_000811	842371	+	AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6	0.0	0.0	
chr16	28349499	28349639	reg1009760.p1	4.921	+	TSC_hg19_v1_chr16_+_28303845 AY874862 NM_001024401	-45788	+	TSC_hg19_v1_chr16_-_28303389 AK091456 AX746995	-46191	-	TSC_hg19_v1_chr16_-_28223181 AB002368 NM_015171	-126394	-	DQ891632 DQ894822 AB527254 BC157849 BC071705 AK000739 AK293264 AY762099 TSC_hg19_v1_chr16_-_28415133 BC000533 BC001571	65472	-	AK055366 AK299421 AK303790 AK304500 TSC_hg19_v1_chr16_-_28415162 AK301233 AK301183 NM_001099661 BC107692 NM_001037808 NM_003752	65588	-	BC157842 AK292155 NM_001199142	88149	-	AY874862|SBK1|388228|SH3-binding domain kinase 1##NM_001024401|SBK1|388228|SH3-binding domain kinase 1##AB002368|XPO6|23214|exportin 6##NM_015171|XPO6|23214|exportin 6##DQ891632|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ894822|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC157849|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC071705|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK000739|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK293264|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AY762099|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC000533|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC001571|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK055366|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK299421|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK303790|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK304500|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301233|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301183|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001099661|EIF3CL|728689|eukaryotic translation initiation factor 3, subunit C-like##BC107692|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001037808|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_003752|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C	0.998813	0.0	
chr19	9419663	9419821	reg1009198.p1	4.921	+	BC109267 BC109268 NM_198535 EU446770	-3948	-	BC146920 NM_001079935	-58080	+	BC137147 BC137162 NM_001005191	-94196	-	NM_001202406 NM_001202407 NM_001202408 NM_001202409 NM_001202410 NM_001202411 NM_032497	14705	+	AK027700 AK308517 AK309952 AK310117 AK092348 AX747491 TSC_hg19_v1_chr19_+_9434880 AK056489 AK310020 AK310781 AK298169 NM_001172650 NM_001202412 BC006436 AL389938 BC034489	15193	+	NM_001202425 U37251	15643	+	BC109267|ZNF699|374879|zinc finger protein 699##BC109268|ZNF699|374879|zinc finger protein 699##NM_198535|ZNF699|374879|zinc finger protein 699##EU446770|ZNF266|10781|zinc finger protein 266##BC146920|OR7E24|26648|olfactory receptor, family 7, subfamily E, member 24##NM_001079935|OR7E24|26648|olfactory receptor, family 7, subfamily E, member 24##BC137147|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##BC137162|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##NM_001005191|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##NM_001202406|ZNF559|84527|zinc finger protein 559##NM_001202407|ZNF559|84527|zinc finger protein 559##NM_001202408|ZNF559|84527|zinc finger protein 559##NM_001202409|ZNF559|84527|zinc finger protein 559##NM_001202410|ZNF559|84527|zinc finger protein 559##NM_001202411|ZNF559|84527|zinc finger protein 559##NM_032497|ZNF559|84527|zinc finger protein 559##AK027700|ZNF559|84527|zinc finger protein 559##AK308517|ZNF559|84527|zinc finger protein 559##AK309952|ZNF559|84527|zinc finger protein 559##AK310117|ZNF559|84527|zinc finger protein 559##AK092348|ZNF559|84527|zinc finger protein 559##AK056489|ZNF559|84527|zinc finger protein 559##AK310020|ZNF559|84527|zinc finger protein 559##AK310781|ZNF559|84527|zinc finger protein 559##AK298169|ZNF559|84527|zinc finger protein 559##NM_001172650|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##NM_001202412|ZNF559|84527|zinc finger protein 559##BC006436|ZNF559|84527|zinc finger protein 559##AL389938|ZNF559|84527|zinc finger protein 559##BC034489|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##NM_001202425|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##U37251|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough	1.841643	0.0	denovo_WM_7:-49:0.779
chr20	52246684	52246791	reg1013340.p1	4.921	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-35938	-	AF041259 NM_006526	-47102	-	AK302570 NM_001193421	-444916	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	440325	-	AK315220 NM_003657	440566	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	543783	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.995752	0.0	
chr20	57226170	57226296	reg1002673.p2	4.921	+	BC101758 BC101760 AK074647 NM_153360 AK293299	-136335	-	AK124571 TSC_hg19_v1_chr20_+_57022525	-203741	+	TSC_hg19_v1_chr20_+_56964291 BC001712 AF086628 AF086629 AK298036 AK127252 AB529043 CU674842 BT009811	-261779	+	TSC_hg19_v1_chr20_+_57226338 AK316547 NM_001001433 NM_001134772 NM_001134773 NM_001204868 NM_003763 AK304867 AB209296	155	+	TSC_hg19_v1_chr20_+_57226873 BC019042 AF008935 AF008936 AF008937 BC073876 AF038897 AF428146 AK026970	758	+	NM_001204872 NM_001204873 AK297667 AK307771	37955	+	BC101758|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##BC101760|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK074647|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##NM_153360|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK293299|APCDD1L|164284|adenomatosis polyposis coli down-regulated 1-like##AK124571|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##BC001712|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AF086628|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AF086629|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK298036|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK127252|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##BT009811|VAPB|9217|VAMP (vesicle-associated membrane protein)-associated protein B and C##AK316547|STX16|8675|syntaxin 16##NM_001001433|STX16|8675|syntaxin 16##NM_001134772|STX16|8675|syntaxin 16##NM_001134773|STX16|8675|syntaxin 16##NM_001204868|STX16|8675|syntaxin 16##NM_003763|STX16|8675|syntaxin 16##AK304867|STX16|8675|syntaxin 16##AB209296|STX16-NPEPL1|100534593|STX16-NPEPL1 readthrough (non-protein coding)##BC019042|STX16|8675|syntaxin 16##AF008935|STX16|8675|syntaxin 16##AF008936|STX16|8675|syntaxin 16##AF008937|STX16|8675|syntaxin 16##BC073876|STX16|8675|syntaxin 16##AF038897|STX16|8675|syntaxin 16##AF428146|STX16|8675|syntaxin 16##AK026970|STX16|8675|syntaxin 16##NM_001204872|NPEPL1|79716|aminopeptidase-like 1##NM_001204873|NPEPL1|79716|aminopeptidase-like 1##AK297667|NPEPL1|79716|aminopeptidase-like 1##AK307771|NPEPL1|79716|aminopeptidase-like 1	0.0	0.0	
chr4	87903436	87903616	reg1011196.p2	4.921	+	TSC_hg19_v1_chr4_+_87857481 L13743	-46043	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-47311	+	BC016746 BC063410 NM_144645	-89966	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	24795	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	64725	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	238136	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	1.993876	0.0	denovo_WM_7:21:0.564	denovo_WM_7:22:0.432	denovo_WM_7:36:0.485	denovo_WM_7:37:0.512
chr5	173700495	173700627	reg1009781.p1	4.921	+	TSC_hg19_v1_chr5_+_173472748 AF113537 AF123767 AF133422	-227809	+	TSC_hg19_v1_chr5_+_173472722 AK315952 AK297196 AK312359 BC002619 NM_015980 AK294383 BC018873	-227850	+	NM_001144954 BC092489 BC066964 BC034971 BC047225 BC053953 BC057842	-284371	+	TSC_hg19_v1_chr5_+_174151624 NM_002449 D31771 D89377 S75361 D26145 BC015509 X69295 AB590246 DQ891600 DQ894795 BT009814	451051	+	NM_000794	1170601	-	NM_022754 TSC_hg19_v1_chr5_+_174905562 BC063241 BX648188 AK056915 AF327346	1205001	+	AF113537|HMP19|51617|HMP19 protein##AF123767|HMP19|51617|HMP19 protein##AF133422|HMP19|51617|HMP19 protein##AK315952|HMP19|51617|HMP19 protein##AK297196|HMP19|51617|HMP19 protein##AK312359|HMP19|51617|HMP19 protein##BC002619|HMP19|51617|HMP19 protein##NM_015980|HMP19|51617|HMP19 protein##AK294383|HMP19|51617|HMP19 protein##BC018873|HMP19|51617|HMP19 protein##NM_001144954|C5orf47|133491|chromosome 5 open reading frame 47##BC092489|C5orf47|133491|chromosome 5 open reading frame 47##BC066964|C5orf47|133491|chromosome 5 open reading frame 47##BC034971|C5orf47|133491|chromosome 5 open reading frame 47##BC047225|C5orf47|133491|chromosome 5 open reading frame 47##BC053953|C5orf47|133491|chromosome 5 open reading frame 47##BC057842|C5orf47|133491|chromosome 5 open reading frame 47##NM_002449|MSX2|4488|msh homeobox 2##D31771|MSX2|4488|msh homeobox 2##D89377|MSX2|4488|msh homeobox 2##S75361|MSX2|4488|msh homeobox 2##D26145|MSX2|4488|msh homeobox 2##BC015509|MSX2|4488|msh homeobox 2##X69295|MSX2|4488|msh homeobox 2##DQ891600|MSX2|4488|msh homeobox 2##DQ894795|MSX2|4488|msh homeobox 2##BT009814|MSX2|4488|msh homeobox 2##NM_000794|DRD1|1812|dopamine receptor D1##NM_022754|SFXN1|94081|sideroflexin 1##BC063241|SFXN1|94081|sideroflexin 1##BX648188|SFXN1|94081|sideroflexin 1##AK056915|SFXN1|94081|sideroflexin 1##AF327346|SFXN1|94081|sideroflexin 1	0.383216	0.0	denovo_WM_7:-2:0.294
chr17	2393014	2393141	reg1007014.p2	4.920	+	X96401 NM_020310 TSC_hg19_v1_chr17_-_2304355 AK291596	-88761	-	TSC_hg19_v1_chr17_+_2240796 NM_014853 AB007857 NM_001098509 BC039204 AK294955 AB275762 AB385325 AB449878 AK304263	-152175	+	NM_018128 AB037822	-152339	-	TSC_hg19_v1_chr17_-_2415189 BX647255 AK294547 BC050603 BC001213 AL832612 AK027410 AK296464 NM_024086	22068	-	TSC_hg19_v1_chr17_+_2496944 NM_000430 L13386	103893	+	TSC_hg19_v1_chr17_+_2497263 BX538346 AK313078 L13385 BC064638	104181	+	X96401|MNT|4335|MAX binding protein##NM_020310|MNT|4335|MAX binding protein##AK291596|MNT|4335|MAX binding protein##NM_014853|SGSM2|9905|small G protein signaling modulator 2##AB007857|SGSM2|9905|small G protein signaling modulator 2##NM_001098509|SGSM2|9905|small G protein signaling modulator 2##BC039204|SGSM2|9905|small G protein signaling modulator 2##AK294955|SGSM2|9905|small G protein signaling modulator 2##AB275762|SGSM2|9905|small G protein signaling modulator 2##AB449878|SGSM2|9905|small G protein signaling modulator 2##AK304263|SGSM2|9905|small G protein signaling modulator 2##NM_018128|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##AB037822|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##BX647255|METTL16|79066|methyltransferase like 16##AK294547|METTL16|79066|methyltransferase like 16##BC050603|METTL16|79066|methyltransferase like 16##BC001213|METTL16|79066|methyltransferase like 16##AL832612|METTL16|79066|methyltransferase like 16##AK027410|METTL16|79066|methyltransferase like 16##AK296464|METTL16|79066|methyltransferase like 16##NM_024086|METTL16|79066|methyltransferase like 16##NM_000430|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13386|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BX538346|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AK313078|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13385|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BC064638|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	1.602585	0.0	denovo_WM_7:30:0.472	denovo_WM_7:-40:0.331	denovo_WM_7:-41:0.331	denovo_WM_7:-42:0.331
chr6	129970732	129970885	reg1010041.p1	4.920	+	NM_000426 NM_001079823 Z26653	-766495	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1129152	-	AK124031 NM_001164687	-1731050	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	60518	-	NM_001010876	211607	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	368917	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	1.99262	0.0	denovo_WM_7:15:0.235	denovo_WM_7:17:0.737
chr6	88466731	88466869	reg1006622.p1	4.920	+	AK001204 NM_018064 TSC_hg19_v1_chr6_-_88411988	-54812	-	TSC_hg19_v1_chr6_-_88411949 AK222701	-54852	-	TSC_hg19_v1_chr6_-_88411885 BC000764 BC003042	-54891	-	BC029488 NM_030960 AF203447	290730	+	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	388236	-	NM_001160226 NM_001160258 NM_001160259 NM_016083	408966	-	AK001204|AKIRIN2|55122|akirin 2##NM_018064|AKIRIN2|55122|akirin 2##AK222701|AKIRIN2|55122|akirin 2##BC000764|AKIRIN2|55122|akirin 2##BC003042|AKIRIN2|55122|akirin 2##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)	0.0	0.0	
chr10	93993009	93993141	reg1008325.p2	4.919	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-309383	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-309559	+	AK315427 BC025966 AK075410 NM_152429	-323855	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	9944	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	57761	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	57979	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.201163	0.0	
chr19	47289262	47289417	reg1011096.p1	4.919	+	TSC_hg19_v1_chr19_-_47288122 AK316546 AK299137 NM_001145145 AK055630	-1239	-	TSC_hg19_v1_chr19_-_47249708 NM_001039877 NM_013403	-39626	-	TSC_hg19_v1_chr19_-_47249688 AF212940 AB527410 BC034604	-39645	-	AK293433 AK301661 NM_001145144	1203	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	1934	-	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	2383	-	AK316546|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK299137|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145145|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK055630|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001039877|STRN4|29888|striatin, calmodulin binding protein 4##NM_013403|STRN4|29888|striatin, calmodulin binding protein 4##AF212940|STRN4|29888|striatin, calmodulin binding protein 4##BC034604|STRN4|29888|striatin, calmodulin binding protein 4##AK293433|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK301661|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_001145144|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5	0.99896	0.0	denovo_WM_7:-18:0.314	denovo_WM_7:-19:0.314	denovo_WM_7:-20:0.314
chr20	37504258	37504438	reg1004574.p1	4.919	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-69994	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-127236	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-151189	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	50641	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	50720	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	86641	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.0	0.0	
chr5	172235015	172235170	reg1008985.p2	4.919	+	TSC_hg19_v1_chr5_-_172198199 X68277 AK300487 AK298047 AK298658 AK304475 AK316321 BC022463 NM_004417 AK299391	-36881	-	AF275799 TSC_hg19_v1_chr5_-_172083715	-151449	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	-166839	+	TSC_hg19_v1_chr5_+_172261253 NM_001031711 AB033007 BC012766 BC014490 AB463606	26226	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	151356	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	175690	+	X68277|DUSP1|1843|dual specificity phosphatase 1##AK300487|DUSP1|1843|dual specificity phosphatase 1##AK298047|DUSP1|1843|dual specificity phosphatase 1##AK298658|DUSP1|1843|dual specificity phosphatase 1##AK304475|DUSP1|1843|dual specificity phosphatase 1##AK316321|DUSP1|1843|dual specificity phosphatase 1##BC022463|DUSP1|1843|dual specificity phosphatase 1##NM_004417|DUSP1|1843|dual specificity phosphatase 1##AK299391|DUSP1|1843|dual specificity phosphatase 1##GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001031711|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##AB033007|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC012766|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC014490|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1	0.999751	0.0	denovo_WM_7:-32:0.295	denovo_WM_7:-33:0.295	denovo_WM_7:-34:0.295
chrX	30830517	30830648	reg1007984.p1	4.919	+	TSC_hg19_v1_chrX_+_30671612 L13943 AK294938 AK294304 BX647604 AK308238 BC037549 CU688226 DQ891580 DQ894773	-158954	+	TSC_hg19_v1_chrX_+_30671539 AK313215	-159040	+	TSC_hg19_v1_chrX_+_30671493 BC042421 BC071595 NM_000167 NM_001128127 NM_001205019 NM_203391	-159088	+	TSC_hg19_v1_chrX_-_30907408 AK297274 NM_152787	76877	-	BC069538 BC100768 BC100769 BC100770 BC069069 AF285592 NM_031894	259581	-	CU688550 M92650 TSC_hg19_v1_chrX_-_31285072 BC070078 NM_004015 NM_004016 NM_004017 NM_004018 NM_004019 S42206 BC094758 AK299936 BC028720 S38776	454452	-	L13943|GK|2710|glycerol kinase##AK294938|GK|2710|glycerol kinase##AK294304|GK|2710|glycerol kinase##BX647604|GK|2710|glycerol kinase##AK308238|GK|2710|glycerol kinase##BC037549|GK|2710|glycerol kinase##DQ891580|GK|2710|glycerol kinase##DQ894773|GK|2710|glycerol kinase##AK313215|GK|2710|glycerol kinase##BC042421|GK|2710|glycerol kinase##BC071595|GK|2710|glycerol kinase##NM_000167|GK|2710|glycerol kinase##NM_001128127|GK|2710|glycerol kinase##NM_001205019|GK|2710|glycerol kinase##NM_203391|GK|2710|glycerol kinase##AK297274|TAB3|257397|TGF-beta activated kinase 1/MAP3K7 binding protein 3##NM_152787|TAB3|257397|TGF-beta activated kinase 1/MAP3K7 binding protein 3##BC069538|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC100768|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC100769|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC100770|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC069069|FTHL17|53940|ferritin, heavy polypeptide-like 17##AF285592|FTHL17|53940|ferritin, heavy polypeptide-like 17##NM_031894|FTHL17|53940|ferritin, heavy polypeptide-like 17##M92650|DMD|1756|dystrophin##BC070078|DMD|1756|dystrophin##NM_004015|DMD|1756|dystrophin##NM_004016|DMD|1756|dystrophin##NM_004017|DMD|1756|dystrophin##NM_004018|DMD|1756|dystrophin##NM_004019|DMD|1756|dystrophin##S42206|DMD|1756|dystrophin##BC094758|DMD|1756|dystrophin##AK299936|DMD|1756|dystrophin##BC028720|DMD|1756|dystrophin##S38776|DMD|1756|dystrophin	0.964684	0.0	denovo_WM_7:0:0.782
chr16	8894123	8894303	reg1008559.p1	4.918	+	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-2515	+	TSC_hg19_v1_chr16_-_8891497 BC015912 AK225638 AL080088 AK314404 NM_015421 AK093383	-2668	-	TSC_hg19_v1_chr16_+_8814575 AK290501 NM_001127448 AK310771	-79633	+	NM_001042476 BC001333	68039	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	68647	-	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	163082	-	NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##BC015912|TMEM186|25880|transmembrane protein 186##AK225638|TMEM186|25880|transmembrane protein 186##AL080088|TMEM186|25880|transmembrane protein 186##AK314404|TMEM186|25880|transmembrane protein 186##NM_015421|TMEM186|25880|transmembrane protein 186##AK093383|TMEM186|25880|transmembrane protein 186##AK290501|ABAT|18|4-aminobutyrate aminotransferase##NM_001127448|ABAT|18|4-aminobutyrate aminotransferase##AK310771|ABAT|18|4-aminobutyrate aminotransferase##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)	0.999093	0.0	denovo_WM_7:12:0.310	denovo_WM_7:13:0.310	denovo_WM_7:14:0.310
chr19	18488514	18488627	reg1011860.p1	4.918	+	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	-37163	+	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	-54604	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	-54683	-	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	8412	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	19850	-	TSC_hg19_v1_chr19_+_18530163 NM_001009998 NM_032627	41557	+	AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25##NM_001009998|SSBP4|170463|single stranded DNA binding protein 4##NM_032627|SSBP4|170463|single stranded DNA binding protein 4	0.999285	0.0	
chr19	2631524	2631682	reg1011088.p1	4.918	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-155365	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-174643	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-174667	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	71092	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	71139	-	AK124445 TSC_hg19_v1_chr19_-_2717420	85746	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.0	0.0	
chr6	126492337	126492504	reg1011478.p2	4.918	+	TSC_hg19_v1_chr6_+_126307685 AK308651	-184757	+	BC056878 NM_001031712 TSC_hg19_v1_chr6_+_126307625 AF532977 BC017696 AF182423	-184818	+	TSC_hg19_v1_chr6_+_126277915 NM_138571 BX647228 AK309857 BC015732 AK057688 AJ420577 AY035387 AY035388 AY486460 AY486461 DQ892201 DQ895396	-214435	+	TSC_hg19_v1_chr6_+_126661265 BC039556 NM_001012507 AY902475 BC062798 BC046178 BC017928	168850	+	TSC_hg19_v1_chr6_+_127439818 BC022367	947391	+	NM_032784 AF251057	947631	+	AK308651|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##BC056878|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##NM_001031712|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##AF532977|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##AF182423|TRMT11|60487|tRNA methyltransferase 11 homolog (S. cerevisiae)##NM_138571|HINT3|135114|histidine triad nucleotide binding protein 3##BX647228|HINT3|135114|histidine triad nucleotide binding protein 3##AK309857|HINT3|135114|histidine triad nucleotide binding protein 3##BC015732|HINT3|135114|histidine triad nucleotide binding protein 3##AK057688|HINT3|135114|histidine triad nucleotide binding protein 3##AJ420577|HINT3|135114|histidine triad nucleotide binding protein 3##AY035387|HINT3|135114|histidine triad nucleotide binding protein 3##AY035388|HINT3|135114|histidine triad nucleotide binding protein 3##AY486460|HINT3|135114|histidine triad nucleotide binding protein 3##AY486461|HINT3|135114|histidine triad nucleotide binding protein 3##DQ892201|HINT3|135114|histidine triad nucleotide binding protein 3##DQ895396|HINT3|135114|histidine triad nucleotide binding protein 3##BC039556|CENPW|387103|centromere protein W##NM_001012507|CENPW|387103|centromere protein W##AY902475|CENPW|387103|centromere protein W##BC062798|CENPW|387103|centromere protein W##BC046178|CENPW|387103|centromere protein W##BC017928|CENPW|387103|centromere protein W##BC022367|RSPO3|84870|R-spondin 3##NM_032784|RSPO3|84870|R-spondin 3##AF251057|RSPO3|84870|R-spondin 3	0.990093	0.0	denovo_WM_7:-15:0.585	denovo_WM_7:-16:0.394
chr10	112632493	112632656	reg1011273.p1	4.917	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	-860	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	-962	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-228445	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	46122	-	TSC_hg19_v1_chr10_-_112678952 BC062778 AK021501 BC104248 BC104249 BC113000 BC113001 AK025724 BC105804 AK307314 BC073157 NM_001195304 NM_001195305 NM_001195307 NM_001243783	46438	-	TSC_hg19_v1_chr10_+_112679309 NM_007373	46721	+	AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1##BC062778|BBIP1|92482|BBSome interacting protein 1##AK021501|BBIP1|92482|BBSome interacting protein 1##BC104248|BBIP1|92482|BBSome interacting protein 1##BC104249|BBIP1|92482|BBSome interacting protein 1##BC113000|BBIP1|92482|BBSome interacting protein 1##BC113001|BBIP1|92482|BBSome interacting protein 1##AK025724|BBIP1|92482|BBSome interacting protein 1##BC105804|BBIP1|92482|BBSome interacting protein 1##AK307314|BBIP1|92482|BBSome interacting protein 1##BC073157|BBIP1|92482|BBSome interacting protein 1##NM_001195304|BBIP1|92482|BBSome interacting protein 1##NM_001195305|BBIP1|92482|BBSome interacting protein 1##NM_001195307|BBIP1|92482|BBSome interacting protein 1##NM_001243783|BBIP1|92482|BBSome interacting protein 1##NM_007373|SHOC2|8036|soc-2 suppressor of clear homolog (C. elegans)	0.030057	0.01709	
chr17	16311615	16311741	reg1007663.p1	4.917	+	AK129498 BC015127 BC026301 BC031027 BC038999 TSC_hg19_v1_chr17_+_16284408 BC046123 BC009301	-27264	+	TSC_hg19_v1_chr17_+_16284404 AK300882	-27276	+	TSC_hg19_v1_chr17_+_16284371 BC000379 NM_018955	-27314	+	TSC_hg19_v1_chr17_+_16318881 AK289705 NM_016113 BC018926 BC051305	7195	+	TSC_hg19_v1_chr17_+_16318917 AK001896	7240	+	TSC_hg19_v1_chr17_+_16319096 AF103906	7427	+	AK129498|UBB|7314|ubiquitin B##BC015127|UBB|7314|ubiquitin B##BC026301|UBB|7314|ubiquitin B##BC031027|UBB|7314|ubiquitin B##BC038999|UBB|7314|ubiquitin B##BC046123|UBB|7314|ubiquitin B##BC009301|UBB|7314|ubiquitin B##AK300882|UBB|7314|ubiquitin B##BC000379|UBB|7314|ubiquitin B##NM_018955|UBB|7314|ubiquitin B##AK289705|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##NM_016113|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##BC018926|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##BC051305|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##AK001896|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##AF103906|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2	0.892719	0.0	denovo_WM_7:-1:0.820
chr5	118644586	118644728	reg1007315.p1	4.917	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-40140	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-40199	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-237492	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	46961	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	47081	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	143539	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.993772	0.0	
chr7	74690027	74690181	reg1010445.p1	4.917	+	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-181730	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-200412	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-200466	-	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	177416	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	298466	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	334861	+	NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73	0.999686	0.0	
chr15	37395059	37395195	reg1008322.p1	4.916	+	TSC_hg19_v1_chr15_-_37393466 BC050431 NM_001220482 NM_002399 BC001516 BC001844 BC007202 AK300247	-1685	-	TSC_hg19_v1_chr15_-_37392751 AK056216 NM_170674 NM_170675 NM_170676 NM_170677	-2571	-	TSC_hg19_v1_chr15_-_37392322 AK226072	-2796	-	BC029221 NM_152453	832329	+	TSC_hg19_v1_chr15_+_38544515 AK091222 AX746859 BC137480 BC137481	1149268	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	1149895	+	BC050431|MEIS2|4212|Meis homeobox 2##NM_001220482|MEIS2|4212|Meis homeobox 2##NM_002399|MEIS2|4212|Meis homeobox 2##BC001516|MEIS2|4212|Meis homeobox 2##BC001844|MEIS2|4212|Meis homeobox 2##BC007202|MEIS2|4212|Meis homeobox 2##AK300247|MEIS2|4212|Meis homeobox 2##AK056216|MEIS2|4212|Meis homeobox 2##NM_170674|MEIS2|4212|Meis homeobox 2##NM_170675|MEIS2|4212|Meis homeobox 2##NM_170676|MEIS2|4212|Meis homeobox 2##NM_170677|MEIS2|4212|Meis homeobox 2##AK226072|MEIS2|4212|Meis homeobox 2##BC029221|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_152453|TMCO5A|145942|transmembrane and coiled-coil domains 5A##AK091222|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137480|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137481|SPRED1|161742|sprouty-related, EVH1 domain containing 1##NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1	0.643048	0.0	denovo_WM_7:-19:0.465
chr17	2163639	2163762	reg1011240.p2	4.916	+	DQ187313 NM_001098202	-204143	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	-205302	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-218392	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	43112	-	AB385377 AY145883 TSC_hg19_v1_chr17_-_2207028 NM_017575	43340	-	TSC_hg19_v1_chr17_+_2207247 AY743706 AK223120 AK023169 NM_021947 BC057234	43552	+	DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY145883|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_017575|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY743706|SRR|63826|serine racemase##AK223120|SRR|63826|serine racemase##AK023169|SRR|63826|serine racemase##NM_021947|SRR|63826|serine racemase##BC057234|SRR|63826|serine racemase	0.0	0.038926	
chr5	75621721	75621873	reg1011093.p1	4.916	+	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	-242526	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-608537	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	-613535	-	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	77319	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	297348	-	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	390159	+	AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor	0.989405	0.0	denovo_WM_7:12:0.754
chr6_apd_hap1	3115270	3115395	reg1009335.p1	4.916	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.996067	0.0	
chrX	148227832	148227980	reg1010440.p1	4.916	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	-427294	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	-645718	+	BC034320 NM_152578 AY211917 AK098602	-1165051	+	CU675281 AF050145 BC006170 TSC_hg19_v1_chrX_-_148586837 BX647357 L40586 M58342 AK294541 NM_000202 NM_001166550 NM_006123	358868	-	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	394524	-	NM_001171907 NM_001171908 NM_178124 U66049 AK294153 AY074889 AK291899 BC065539 BC104930 BC104932 BC143660 BC143661 BC143662	394688	+	AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2##NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##AF050145|IDS|3423|iduronate 2-sulfatase##BC006170|IDS|3423|iduronate 2-sulfatase##BX647357|IDS|3423|iduronate 2-sulfatase##L40586|IDS|3423|iduronate 2-sulfatase##M58342|IDS|3423|iduronate 2-sulfatase##AK294541|IDS|3423|iduronate 2-sulfatase##NM_000202|IDS|3423|iduronate 2-sulfatase##NM_001166550|IDS|3423|iduronate 2-sulfatase##NM_006123|IDS|3423|iduronate 2-sulfatase##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434##NM_001171907|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171908|CXorf40A|91966|chromosome X open reading frame 40A##NM_178124|CXorf40A|91966|chromosome X open reading frame 40A##U66049|CXorf40A|91966|chromosome X open reading frame 40A##AK294153|CXorf40A|91966|chromosome X open reading frame 40A##AY074889|CXorf40A|91966|chromosome X open reading frame 40A##AK291899|CXorf40A|91966|chromosome X open reading frame 40A##BC065539|CXorf40A|91966|chromosome X open reading frame 40A##BC104930|CXorf40A|91966|chromosome X open reading frame 40A##BC104932|CXorf40A|91966|chromosome X open reading frame 40A##BC143660|CXorf40A|91966|chromosome X open reading frame 40A##BC143661|CXorf40A|91966|chromosome X open reading frame 40A##BC143662|CXorf40A|91966|chromosome X open reading frame 40A	1.995361	0.0	denovo_WM_7:73:0.569	denovo_WM_7:74:0.286	denovo_WM_7:88:0.330	denovo_WM_7:89:0.612
chr1	210424326	210424506	reg1011830.p2	4.915	+	BC012083 NM_019605 AK096381	-18205	+	AJ617623 TSC_hg19_v1_chr1_+_210111595 AK091517 AX747035 BC130323 BC144154 BC144155 BC144157 AJ617625	-312827	+	NM_001146261 NM_001146262 NM_001146264 NM_153262 TSC_hg19_v1_chr1_+_210111559	-312866	+	NM_001122834 NM_001170564 AK297193	77180	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	77849	+	NM_001170580 BC051191	78225	+	BC012083|SERTAD4|56256|SERTA domain containing 4##NM_019605|SERTAD4|56256|SERTA domain containing 4##AK096381|SERTAD4|56256|SERTA domain containing 4##AJ617623|SYT14|255928|synaptotagmin XIV##AK091517|SYT14|255928|synaptotagmin XIV##BC130323|SYT14|255928|synaptotagmin XIV##BC144154|SYT14|255928|synaptotagmin XIV##BC144155|SYT14|255928|synaptotagmin XIV##BC144157|SYT14|255928|synaptotagmin XIV##AJ617625|SYT14|255928|synaptotagmin XIV##NM_001146261|SYT14|255928|synaptotagmin XIV##NM_001146262|SYT14|255928|synaptotagmin XIV##NM_001146264|SYT14|255928|synaptotagmin XIV##NM_153262|SYT14|255928|synaptotagmin XIV##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase	0.985606	0.0	denovo_WM_7:-32:0.455	denovo_WM_7:-33:0.455
chr13	53318295	53318385	reg1011297.p1	4.915	+	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	-4378	-	AB006000 CR541910 TSC_hg19_v1_chr13_-_53313891	-4476	-	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	-91398	+	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	104435	-	AK000683 NM_006418 BC117329 TSC_hg19_v1_chr13_+_53602947 AY358567 HQ258281 AF097021 AK300947	284572	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	4396776	+	BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AB006000|LECT1|11061|leukocyte cell derived chemotaxin 1##CR541910|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8##AK000683|OLFM4|10562|olfactomedin 4##NM_006418|OLFM4|10562|olfactomedin 4##BC117329|OLFM4|10562|olfactomedin 4##AY358567|OLFM4|10562|olfactomedin 4##HQ258281|OLFM4|10562|olfactomedin 4##AF097021|OLFM4|10562|olfactomedin 4##AK300947|OLFM4|10562|olfactomedin 4##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A	1.108928	0.019576	denovo_WM_7:40:0.734
chr14	55508436	55508531	reg1009673.p1	4.915	+	TSC_hg19_v1_chr14_+_55493974 NM_080867 NM_199421 BX161418 CR933659 BC060790 AK124083	-14554	+	TSC_hg19_v1_chr14_-_55493818 BC043349 NM_001008396 NM_007086	-14672	-	TSC_hg19_v1_chr14_-_55493780 BC000622 BC005040 AK293005 BC063041	-14698	-	TSC_hg19_v1_chr14_+_55518364 NM_144578 AK315501	9857	+	TSC_hg19_v1_chr14_+_55518382 AL834285	9894	+	AK025580 TSC_hg19_v1_chr14_+_55518408 BC015621	9948	+	NM_080867|SOCS4|122809|suppressor of cytokine signaling 4##NM_199421|SOCS4|122809|suppressor of cytokine signaling 4##BX161418|SOCS4|122809|suppressor of cytokine signaling 4##CR933659|SOCS4|122809|suppressor of cytokine signaling 4##BC060790|SOCS4|122809|suppressor of cytokine signaling 4##AK124083|SOCS4|122809|suppressor of cytokine signaling 4##BC043349|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_001008396|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_007086|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC000622|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC005040|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##AK293005|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC063041|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_144578|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AK315501|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AL834285|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AK025580|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##BC015621|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like	1.062999	0.0	
chr2	87644395	87644553	reg1009892.p2	4.915	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-341142	-	BC107767 BC109248 BC070296 BC005379 NM_001032392 M93143 NM_002665 BC022294	-395516	-	CR749330 NM_001024457	-499737	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	110543	+	TSC_hg19_v1_chr2_+_87755060 AK312010	110586	+	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	403145	+	BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC107767|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC022294|PLGLB2|5342|plasminogen-like B2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1	0.0	0.0	
chr9	127027814	127027944	reg1004410.p3	4.915	+	TSC_hg19_v1_chr9_+_127020588 AL832574	-7289	+	TSC_hg19_v1_chr9_+_127020519 NM_001166168 AK313071	-7356	+	TSC_hg19_v1_chr9_+_127020255 AB026289	-7615	+	TSC_hg19_v1_chr9_+_127054267 NM_001166170 NM_001166171	26380	+	TSC_hg19_v1_chr9_+_127054570 AK294614 NM_001166169	26753	+	TSC_hg19_v1_chr9_+_127119114 BC042968	91290	+	NM_001166168|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK313071|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166170|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166171|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK294614|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166169|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	1.293608	0.0	denovo_WM_7:-69:0.955
chr19	10763181	10763316	reg1010136.p1	4.914	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	-27029	+	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	-50115	+	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	-65300	-	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	1263	-	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	1692	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	1798	+	FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa	0.996443	0.0	
chr4	100039389	100039494	reg1011200.p2	4.914	+	TSC_hg19_v1_chr4_+_100010018 BX647987	-29426	+	TSC_hg19_v1_chr4_-_100009912 NM_000671	-29520	-	TSC_hg19_v1_chr4_-_100009865 AK129570 BC070491 AK312367 M29872	-29558	-	CU692552 M15943 TSC_hg19_v1_chr4_-_100065449 AK290835 AK295556 AK313649 BC022319 NM_000670	25970	-	AK316326 BC039065 TSC_hg19_v1_chr4_-_100140401 AK092768 NM_000672 NM_001102470	100926	-	M12271 BC074738 BC117442 BC126306 AK290558 M12963 AK309597 NM_000667	172693	-	BX647987|LOC100507053|100507053|uncharacterized LOC100507053##NM_000671|ADH5|128|alcohol dehydrogenase 5 (class III), chi polypeptide##AK129570|ADH5|128|alcohol dehydrogenase 5 (class III), chi polypeptide##BC070491|ADH5|128|alcohol dehydrogenase 5 (class III), chi polypeptide##AK312367|ADH5|128|alcohol dehydrogenase 5 (class III), chi polypeptide##M29872|ADH5|128|alcohol dehydrogenase 5 (class III), chi polypeptide##M15943|ADH4|127|alcohol dehydrogenase 4 (class II), pi polypeptide##AK290835|ADH4|127|alcohol dehydrogenase 4 (class II), pi polypeptide##AK295556|ADH4|127|alcohol dehydrogenase 4 (class II), pi polypeptide##AK313649|ADH4|127|alcohol dehydrogenase 4 (class II), pi polypeptide##BC022319|ADH4|127|alcohol dehydrogenase 4 (class II), pi polypeptide##NM_000670|ADH4|127|alcohol dehydrogenase 4 (class II), pi polypeptide##AK316326|ADH6|130|alcohol dehydrogenase 6 (class V)##BC039065|ADH6|130|alcohol dehydrogenase 6 (class V)##AK092768|ADH6|130|alcohol dehydrogenase 6 (class V)##NM_000672|ADH6|130|alcohol dehydrogenase 6 (class V)##NM_001102470|ADH6|130|alcohol dehydrogenase 6 (class V)##M12271|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##BC074738|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##BC117442|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##BC126306|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##AK290558|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##M12963|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##AK309597|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide##NM_000667|ADH1A|124|alcohol dehydrogenase 1A (class I), alpha polypeptide	0.970419	0.909999	CTCF.p2:14:0.910	denovo_WM_7:-25:0.561	denovo_WM_7:-26:0.268
chr8	90794792	90794953	reg1008619.p2	4.913	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	-24588	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	-24842	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1455126	-	AF061326 NM_004337	119223	+	BC031054 NM_001126111 TSC_hg19_v1_chr8_+_90914816	119922	+	TSC_hg19_v1_chr8_-_90996804 AB528582 BC143065 BC143066 BC108650 BC016762 BC005293 AF058696 AF051334 AK223256 BC146797 BC136802 BC136803 BC144413	201960	-	AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC031054|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001126111|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC143065|NBN|4683|nibrin##BC143066|NBN|4683|nibrin##BC108650|NBN|4683|nibrin##BC016762|NBN|4683|nibrin##BC005293|NBN|4683|nibrin##AF058696|NBN|4683|nibrin##AF051334|NBN|4683|nibrin##AK223256|NBN|4683|nibrin##BC146797|NBN|4683|nibrin##BC136802|NBN|4683|nibrin##BC136803|NBN|4683|nibrin##BC144413|NBN|4683|nibrin	0.991234	0.0	denovo_WM_7:7:0.458	denovo_WM_7:8:0.458
chr19	13068088	13068223	reg1003982.p1	4.912	+	TSC_hg19_v1_chr19_-_13068038 AF479749 NM_052850	-110	-	AJ295986 BC004944 BC013027 BC013039 AF412816 AF475095 AJ429498 CU686712 BC069200 TSC_hg19_v1_chr19_-_13068030	-136	-	TSC_hg19_v1_chr19_+_13056675 AK289908 BC088364 BC014026 AB209713 D21235 AB463210 L37720	-11424	+	AK095926 NM_152654 BC101800 BC113476 AB070695 HQ258091	12297	+	TSC_hg19_v1_chr19_+_13106288 BC052801 NM_002501 AB385580 BT019732	38247	+	TSC_hg19_v1_chr19_+_13134807 AK297261 U18759	66649	+	AF479749|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##NM_052850|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AJ295986|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC004944|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC013027|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC013039|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AF412816|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AF475095|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AJ429498|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC069200|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AK289908|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC088364|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC014026|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AB209713|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##D21235|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AK095926|DAND5|199699|DAN domain family, member 5##NM_152654|DAND5|199699|DAN domain family, member 5##BC101800|DAND5|199699|DAN domain family, member 5##BC113476|DAND5|199699|DAN domain family, member 5##AB070695|DAND5|199699|DAN domain family, member 5##HQ258091|DAND5|199699|DAN domain family, member 5##NM_002501|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BT019732|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK297261|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##U18759|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)	0.01242	0.0	
chr7	47710324	47710484	reg1010144.p3	4.911	+	AK126096 NM_001123065	-15563	+	TSC_hg19_v1_chr7_-_47622186 AB208995	-88218	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	-88621	-	AK024728 NM_025031 BC113679 BC113681 AK092057 AX747337	124534	+	AB061683 NM_138295	277649	-	BT019481 BT019482 CR536552 Y16893 AB463759 BC007013 TSC_hg19_v1_chr7_-_48019149 AK294117 AK290459 AF076844 AF110393	308748	-	AK126096|C7orf65|401335|chromosome 7 open reading frame 65##NM_001123065|C7orf65|401335|chromosome 7 open reading frame 65##AB208995|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3##AK024728|C7orf69|80099|chromosome 7 open reading frame 69##NM_025031|C7orf69|80099|chromosome 7 open reading frame 69##BC113679|C7orf69|80099|chromosome 7 open reading frame 69##BC113681|C7orf69|80099|chromosome 7 open reading frame 69##AK092057|PKD1L1|168507|polycystic kidney disease 1 like 1##AB061683|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_138295|PKD1L1|168507|polycystic kidney disease 1 like 1##BT019481|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BT019482|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##CR536552|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##Y16893|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007013|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK294117|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK290459|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF076844|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF110393|HUS1|3364|HUS1 checkpoint homolog (S. pombe)	1.674982	0.0	denovo_WM_7:-57:0.255	denovo_WM_7:-61:0.252
chr8	47868752	47868932	reg1007320.p2	4.911	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	-4721237	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-4873195	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-4873209	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	304653	+	TSC_hg19_v1_chr8_+_48173521 AK303579	304677	+	TSC_hg19_v1_chr8_+_48173532 AK294248 AK309842	304690	+	AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146##AK294248|KIAA0146|23514|KIAA0146##AK309842|KIAA0146|23514|KIAA0146	0.0	1.04098	CTCF.p2:-85:0.999
chr9	130746210	130746390	reg1006610.p1	4.911	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-3491	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-33369	-	BC015233 NM_003863	-45538	-	AK122729 NM_197956	83298	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	84183	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	84319	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.726061	0.0	denovo_WM_7:9:0.218	denovo_WM_7:10:0.508
chr16	21373448	21373546	reg1012495.p3	4.910	+	BX648477 NM_001014444 NM_001888	-59110	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-83849	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-83904	-	BC036263 NM_130464	63160	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	158255	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	237393	+	BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9	0.0	0.0	
chr17	46191993	46192097	reg1011494.p1	4.910	+	TSC_hg19_v1_chr17_+_46185128 BC103721 AK298551	-6893	+	AK091852 AK296095 AK316374 AK023932 NM_152244 AK296569 AF121861 NM_013323 TSC_hg19_v1_chr17_+_46185061	-7060	+	TSC_hg19_v1_chr17_-_46178825 U35451 BC002609 AK312615 NM_001127228	-13224	-	AB590503 CU690516 Y11215 BC047870 TSC_hg19_v1_chr17_-_46507592 AK290818 NM_001075099 NM_003726	315493	-	TSC_hg19_v1_chr17_-_46507604 BC039040	315572	-	BC096191 BC096192 BC096193 BC099633 NM_002144 X16666	416226	-	BC103721|SNX11|29916|sorting nexin 11##AK298551|SNX11|29916|sorting nexin 11##AK091852|SNX11|29916|sorting nexin 11##AK296095|SNX11|29916|sorting nexin 11##AK316374|SNX11|29916|sorting nexin 11##AK023932|SNX11|29916|sorting nexin 11##NM_152244|SNX11|29916|sorting nexin 11##AK296569|SNX11|29916|sorting nexin 11##AF121861|SNX11|29916|sorting nexin 11##NM_013323|SNX11|29916|sorting nexin 11##U35451|CBX1|10951|chromobox homolog 1##BC002609|CBX1|10951|chromobox homolog 1##AK312615|CBX1|10951|chromobox homolog 1##NM_001127228|CBX1|10951|chromobox homolog 1##Y11215|SKAP1|8631|src kinase associated phosphoprotein 1##BC047870|SKAP1|8631|src kinase associated phosphoprotein 1##AK290818|SKAP1|8631|src kinase associated phosphoprotein 1##NM_001075099|SKAP1|8631|src kinase associated phosphoprotein 1##NM_003726|SKAP1|8631|src kinase associated phosphoprotein 1##BC039040|SKAP1|8631|src kinase associated phosphoprotein 1##BC096191|HOXB1|3211|homeobox B1##BC096192|HOXB1|3211|homeobox B1##BC096193|HOXB1|3211|homeobox B1##BC099633|HOXB1|3211|homeobox B1##NM_002144|HOXB1|3211|homeobox B1##X16666|HOXB1|3211|homeobox B1	0.998889	0.0	denovo_WM_7:9:0.314	denovo_WM_7:10:0.314	denovo_WM_7:11:0.314
chr6	130181855	130182035	reg1008727.p2	4.910	+	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	-150619	-	NM_000426 NM_001079823 Z26653	-977632	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1340289	-	NM_001010876	470	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	157780	+	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	354510	-	BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3	0.991358	0.0	denovo_WM_7:23:0.782
chr10	104192418	104192553	reg1009701.p1	4.909	+	TSC_hg19_v1_chr10_-_104192372 NM_024040	-98	-	TSC_hg19_v1_chr10_-_104192345 AK094695 BC000262	-145	-	NM_024326 BC036120	-12906	+	BC126459 AK024342 NM_024886	18786	-	TSC_hg19_v1_chr10_+_104221151 AK296583	28665	+	TSC_hg19_v1_chr10_+_104221184 AK301612 AY358808 NM_024789	28697	+	NM_024040|CUEDC2|79004|CUE domain containing 2##BC000262|CUEDC2|79004|CUE domain containing 2##NM_024326|FBXL15|79176|F-box and leucine-rich repeat protein 15##BC036120|FBXL15|79176|F-box and leucine-rich repeat protein 15##BC126459|C10orf95|79946|chromosome 10 open reading frame 95##AK024342|C10orf95|79946|chromosome 10 open reading frame 95##NM_024886|C10orf95|79946|chromosome 10 open reading frame 95##AK296583|TMEM180|79847|transmembrane protein 180##AK301612|TMEM180|79847|transmembrane protein 180##AY358808|TMEM180|79847|transmembrane protein 180##NM_024789|TMEM180|79847|transmembrane protein 180	0.0	0.022977	
chr14	70134005	70134152	reg1010017.p1	4.909	+	TSC_hg19_v1_chr14_+_70078414 AK311470 D87434	-55687	+	AK309302 NM_014734 TSC_hg19_v1_chr14_+_70078312 BC064697	-55768	+	TSC_hg19_v1_chr14_+_69951404 AK126770 NM_001161498 BC146872	-182598	+	TSC_hg19_v1_chr14_+_70233809 BX640605	99728	+	BC095420 TSC_hg19_v1_chr14_+_70233810	99732	+	TSC_hg19_v1_chr14_+_70233856 AK311805 NM_001039465 NM_006925	99756	+	D87434|KIAA0247|9766|KIAA0247##AK309302|KIAA0247|9766|KIAA0247##NM_014734|KIAA0247|9766|KIAA0247##BC064697|KIAA0247|9766|KIAA0247##AK126770|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##NM_001161498|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC146872|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BX640605|SRSF5|6430|serine/arginine-rich splicing factor 5##BC095420|SRSF5|6430|serine/arginine-rich splicing factor 5##AK311805|SRSF5|6430|serine/arginine-rich splicing factor 5##NM_001039465|SRSF5|6430|serine/arginine-rich splicing factor 5##NM_006925|SRSF5|6430|serine/arginine-rich splicing factor 5	1.002083	0.0	
chr1	12208558	12208738	reg1009986.p1	4.908	+	D86042 BC063482 NM_152942 BC073839 BC141804	-22632	+	M83554 NM_001243 BC136400 BC171762 S75768	-85104	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-129078	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	18413	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	18463	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	81459	+	D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)	1.964718	0.0	denovo_WM_7:47:0.856	denovo_WM_7:74:0.235	denovo_WM_7:75:0.235	denovo_WM_7:76:0.236	denovo_WM_7:77:0.237
chr12	123722356	123722476	reg1009123.p1	4.908	+	NM_001143905	-4126	+	NM_152269 TSC_hg19_v1_chr12_+_123717982 BC020885 BC062329 AF061733 AK025908 NM_001194995 BC018145	-4466	+	TSC_hg19_v1_chr12_-_123717684 AK096541	-4752	-	DQ891281 DQ894468 BC034717 TSC_hg19_v1_chr12_-_123756363 AB006077 AF006484 NM_004642	34077	-	AY364255 AB014772 BC129949 BC133704 NM_001167856 NM_018183	112569	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	126977	-	NM_001143905|C12orf65|91574|chromosome 12 open reading frame 65##NM_152269|C12orf65|91574|chromosome 12 open reading frame 65##BC020885|C12orf65|91574|chromosome 12 open reading frame 65##BC062329|C12orf65|91574|chromosome 12 open reading frame 65##AF061733|C12orf65|91574|chromosome 12 open reading frame 65##AK025908|C12orf65|91574|chromosome 12 open reading frame 65##NM_001194995|C12orf65|91574|chromosome 12 open reading frame 65##BC018145|C12orf65|91574|chromosome 12 open reading frame 65##AK096541|MPHOSPH9|10198|M-phase phosphoprotein 9##DQ891281|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##DQ894468|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##BC034717|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AB006077|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AF006484|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##NM_004642|CDK2AP1|8099|cyclin-dependent kinase 2 associated protein 1##AY364255|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AB014772|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC129949|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC133704|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_001167856|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_018183|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)	0.990314	0.0	denovo_WM_7:37:0.491	denovo_WM_7:38:0.286	denovo_WM_7:39:0.214
chr17	57719551	57719644	reg1006437.p2	4.908	+	TSC_hg19_v1_chr17_+_57697403 AB587306	-22152	+	TSC_hg19_v1_chr17_+_57697289 AK127134 D21260	-22296	+	TSC_hg19_v1_chr17_+_57697282 BC051800	-22317	+	X55878 TSC_hg19_v1_chr17_+_57743577	23942	+	TSC_hg19_v1_chr17_-_57784773 BC006807 BC017457 AK057033 AF151905 NM_016077	65208	-	NM_030938 TSC_hg19_v1_chr17_+_57784931	65303	+	AK127134|CLTC|1213|clathrin, heavy chain (Hc)##D21260|CLTC|1213|clathrin, heavy chain (Hc)##BC051800|CLTC|1213|clathrin, heavy chain (Hc)##X55878|CLTC|1213|clathrin, heavy chain (Hc)##BC006807|PTRH2|51651|peptidyl-tRNA hydrolase 2##BC017457|PTRH2|51651|peptidyl-tRNA hydrolase 2##AK057033|PTRH2|51651|peptidyl-tRNA hydrolase 2##AF151905|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_016077|PTRH2|51651|peptidyl-tRNA hydrolase 2##NM_030938|VMP1|81671|vacuole membrane protein 1	0.0	0.0	
chr3	141334283	141334391	reg1008864.p1	4.908	+	TSC_hg19_v1_chr3_+_141205882 AK292016 AK301015 AF115573 D78155 D82880 NM_006506	-128466	+	AK311479 TSC_hg19_v1_chr3_+_141105293	-229049	+	TSC_hg19_v1_chr3_+_141087345 AK311501	-246980	+	TSC_hg19_v1_chr3_+_141457045 NM_001201370 NM_014245 NM_183237	122732	+	TSC_hg19_v1_chr3_+_141457129 AK311982	122783	+	TSC_hg19_v1_chr3_+_141457160 BC008627 BC005966 DQ891759 DQ894943 AB590187 AF092878 AF142060 AF312226 AK289894 BT007348	122823	+	AK292016|RASA2|5922|RAS p21 protein activator 2##AK301015|RASA2|5922|RAS p21 protein activator 2##AF115573|RASA2|5922|RAS p21 protein activator 2##D78155|RASA2|5922|RAS p21 protein activator 2##D82880|RASA2|5922|RAS p21 protein activator 2##NM_006506|RASA2|5922|RAS p21 protein activator 2##AK311501|ZBTB38|253461|zinc finger and BTB domain containing 38##NM_001201370|RNF7|9616|ring finger protein 7##NM_014245|RNF7|9616|ring finger protein 7##NM_183237|RNF7|9616|ring finger protein 7##AK311982|RNF7|9616|ring finger protein 7##BC008627|RNF7|9616|ring finger protein 7##BC005966|RNF7|9616|ring finger protein 7##DQ891759|RNF7|9616|ring finger protein 7##DQ894943|RNF7|9616|ring finger protein 7##AF092878|RNF7|9616|ring finger protein 7##AF142060|RNF7|9616|ring finger protein 7##AF312226|RNF7|9616|ring finger protein 7##BT007348|RNF7|9616|ring finger protein 7	2.910354	0.0	denovo_WM_7:31:0.681	denovo_WM_7:46:0.734	denovo_WM_7:61:0.820
chr10	45456325	45456480	reg1003985.p1	4.907	+	TSC_hg19_v1_chr10_+_45455249 AY216713 AY216714 AY216715 AY216716 NM_032023 BC032593 AF260335 AK311531	-1170	+	AK056518 TSC_hg19_v1_chr10_-_45455156	-1255	-	BX538120 BC127789 BC127790 NM_001123376 AB235418	-49684	+	BC011402 AB025244 TSC_hg19_v1_chr10_-_45474258 AK002191 AK098476 AL136653 AB022718 AK300839 AK312496 NM_007021	17867	-	NM_006963 AK291508 AK312278 BC053687 BC010642	39925	+	TSC_hg19_v1_chr10_-_45496265 AK311351 HQ258049 BC062568 BC130369 BC130395 AK055129 NM_001039380	39962	-	AY216713|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216714|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216715|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216716|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##NM_032023|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##BC032593|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AF260335|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AK311531|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AK056518|TMEM72-AS1|220980|TMEM72 antisense RNA 1 (non-protein coding)##BX538120|TMEM72|643236|transmembrane protein 72##BC127789|TMEM72|643236|transmembrane protein 72##BC127790|TMEM72|643236|transmembrane protein 72##NM_001123376|TMEM72|643236|transmembrane protein 72##AB235418|TMEM72|643236|transmembrane protein 72##BC011402|C10orf10|11067|chromosome 10 open reading frame 10##AB025244|C10orf10|11067|chromosome 10 open reading frame 10##AK002191|C10orf10|11067|chromosome 10 open reading frame 10##AK098476|C10orf10|11067|chromosome 10 open reading frame 10##AL136653|C10orf10|11067|chromosome 10 open reading frame 10##AB022718|C10orf10|11067|chromosome 10 open reading frame 10##AK300839|C10orf10|11067|chromosome 10 open reading frame 10##AK312496|C10orf10|11067|chromosome 10 open reading frame 10##NM_007021|C10orf10|11067|chromosome 10 open reading frame 10##NM_006963|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK291508|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK312278|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC053687|ZNF22|7570|zinc finger protein 22 (KOX 15)##BC010642|ZNF22|7570|zinc finger protein 22 (KOX 15)##AK311351|C10orf25|220979|chromosome 10 open reading frame 25##HQ258049|C10orf25|220979|chromosome 10 open reading frame 25##BC062568|C10orf25|220979|chromosome 10 open reading frame 25##BC130369|C10orf25|220979|chromosome 10 open reading frame 25##BC130395|C10orf25|220979|chromosome 10 open reading frame 25##AK055129|C10orf25|220979|chromosome 10 open reading frame 25##NM_001039380|C10orf25|220979|chromosome 10 open reading frame 25	0.0	0.0	
chr14	61857830	61858010	reg1011002.p2	4.907	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-69393	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-109398	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-109726	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	304270	+	FJ790247 NM_001243084	306419	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	371199	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.730491	0.0	denovo_WM_7:10:0.654
chr17	45343380	45343509	reg1010130.p2	4.907	+	TSC_hg19_v1_chr17_+_45331260 AK300424	-12186	+	AY826979 TSC_hg19_v1_chr17_+_45331224 AB587392 U95204	-12220	+	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	-12260	+	BC044604 TSC_hg19_v1_chr17_+_45401141	57697	+	TSC_hg19_v1_chr17_+_45401357 NM_001195192 NM_152347 BC036407 BC037876	57888	+	TSC_hg19_v1_chr17_-_45569837 BC090855 BC067758	226400	-	AY826979|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##U95204|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC044604|C17orf57|124989|chromosome 17 open reading frame 57##NM_001195192|C17orf57|124989|chromosome 17 open reading frame 57##NM_152347|C17orf57|124989|chromosome 17 open reading frame 57##BC036407|C17orf57|124989|chromosome 17 open reading frame 57##BC037876|C17orf57|124989|chromosome 17 open reading frame 57##BC090855|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2##BC067758|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2	0.180806	0.0	
chr17	80566449	80566629	reg1012328.p1	4.907	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-88949	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-149897	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-149976	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	39744	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	89995	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	108067	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	1.088754	0.0	
chr1	87527542	87527722	reg1007513.p1	4.907	+	AB007917 TSC_hg19_v1_chr1_+_87380462	-147175	+	TSC_hg19_v1_chr1_+_87380374 BC025384 BC025990 NM_001134492 NM_012262 AK023260 AB024568 BC108735	-147279	+	TSC_hg19_v1_chr1_-_87380011 NM_004261 NM_203341	-147575	-	TSC_hg19_v1_chr1_+_87595568 BC030523	67917	+	NM_006769 U24576 TSC_hg19_v1_chr1_+_87794164	266525	+	AK292578 TSC_hg19_v1_chr1_+_87794564	266927	+	AB007917|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC025384|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC025990|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_001134492|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_012262|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##AK023260|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##AB024568|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC108735|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_004261|SEP15|9403|15 kDa selenoprotein##NM_203341|SEP15|9403|15 kDa selenoprotein##BC030523|LOC339524|339524|uncharacterized LOC339524##NM_006769|LMO4|8543|LIM domain only 4##U24576|LMO4|8543|LIM domain only 4##AK292578|LMO4|8543|LIM domain only 4	0.984438	0.0	denovo_WM_7:-22:0.455	denovo_WM_7:-23:0.530
chr2	111812761	111812941	reg1009269.p1	4.906	+	AK300513 NM_001142807 BC022268	-322672	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-377029	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-377208	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	65636	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	828775	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	828910	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.0	0.0	
chr5	137468682	137468833	reg1007203.p1	4.906	+	BC144497 AY009402 BC144001 AB057725 NM_058244 AB590697	-49078	+	TSC_hg19_v1_chr5_-_137368794 NM_001101800 NM_001101801 NM_016603	-99967	-	TSC_hg19_v1_chr5_-_137368776 AK314224	-99981	-	U90450 AK312181 AF067724 BC026182 NM_003551	6346	-	BC008039 BC008076 AB384833 AB209079 TSC_hg19_v1_chr5_-_137514319 AK310380 AK289951 AK293621 AK297756 AK299694 AK312333 AK225928 AL136823 NM_001164326 NM_006696 NM_139199	45576	-	NM_005733	45659	+	BC144497|WNT8A|7478|wingless-type MMTV integration site family, member 8A##AY009402|WNT8A|7478|wingless-type MMTV integration site family, member 8A##BC144001|WNT8A|7478|wingless-type MMTV integration site family, member 8A##AB057725|WNT8A|7478|wingless-type MMTV integration site family, member 8A##NM_058244|WNT8A|7478|wingless-type MMTV integration site family, member 8A##NM_001101800|FAM13B|51306|family with sequence similarity 13, member B##NM_001101801|FAM13B|51306|family with sequence similarity 13, member B##NM_016603|FAM13B|51306|family with sequence similarity 13, member B##AK314224|FAM13B|51306|family with sequence similarity 13, member B##U90450|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AK312181|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AF067724|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##BC026182|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##NM_003551|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##BC008039|BRD8|10902|bromodomain containing 8##BC008076|BRD8|10902|bromodomain containing 8##AB209079|BRD8|10902|bromodomain containing 8##AK310380|BRD8|10902|bromodomain containing 8##AK289951|BRD8|10902|bromodomain containing 8##AK293621|BRD8|10902|bromodomain containing 8##AK297756|BRD8|10902|bromodomain containing 8##AK312333|BRD8|10902|bromodomain containing 8##AK225928|BRD8|10902|bromodomain containing 8##AL136823|BRD8|10902|bromodomain containing 8##NM_001164326|BRD8|10902|bromodomain containing 8##NM_006696|BRD8|10902|bromodomain containing 8##NM_139199|BRD8|10902|bromodomain containing 8##NM_005733|KIF20A|10112|kinesin family member 20A	0.997636	0.0	denovo_WM_7:37:0.817
chr11	115372916	115373083	reg1010148.p1	4.905	+	AY309502 TSC_hg19_v1_chr11_-_115088658	-284351	-	NM_182495 AK057953 BC111797 TSC_hg19_v1_chr11_+_114549272 AB463625	-823751	+	AK000134 AK225236 TSC_hg19_v1_chr11_-_114466485 NM_001077639 NM_017678	-906521	-	TSC_hg19_v1_chr11_-_115375134 AB094146 CR457157 CU692354 AF132811 BC125102 BC125103 AY358334 AK075502 BC035930 AK315245 BC047021 NM_001098517 NM_014333	2181	-	TSC_hg19_v1_chr11_-_116643696 DQ892763 DQ896008 AK057832 AK225164 AK289635 AK291111 AK311068 BC006350 NM_001159736 NM_032725	1270699	-	AK301227 BT006642 CU678646 TSC_hg19_v1_chr11_-_116658720 BC004256 BC011929 BC012162 BC017380 AF019767 BC111028	1285716	-	AY309502|CADM1|23705|cell adhesion molecule 1##NM_182495|FAM55B|120406|family with sequence similarity 55, member B##AK057953|FAM55B|120406|family with sequence similarity 55, member B##BC111797|FAM55B|120406|family with sequence similarity 55, member B##AK000134|FAM55D|54827|family with sequence similarity 55, member D##AK225236|FAM55D|54827|family with sequence similarity 55, member D##NM_001077639|FAM55D|54827|family with sequence similarity 55, member D##NM_017678|FAM55D|54827|family with sequence similarity 55, member D##AB094146|CADM1|23705|cell adhesion molecule 1##CR457157|CADM1|23705|cell adhesion molecule 1##AF132811|CADM1|23705|cell adhesion molecule 1##BC125102|CADM1|23705|cell adhesion molecule 1##BC125103|CADM1|23705|cell adhesion molecule 1##AY358334|CADM1|23705|cell adhesion molecule 1##AK075502|CADM1|23705|cell adhesion molecule 1##BC035930|CADM1|23705|cell adhesion molecule 1##AK315245|CADM1|23705|cell adhesion molecule 1##BC047021|CADM1|23705|cell adhesion molecule 1##NM_001098517|CADM1|23705|cell adhesion molecule 1##NM_014333|CADM1|23705|cell adhesion molecule 1##DQ892763|BUD13|84811|BUD13 homolog (S. cerevisiae)##DQ896008|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK057832|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK225164|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK289635|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK291111|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK311068|BUD13|84811|BUD13 homolog (S. cerevisiae)##BC006350|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_001159736|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_032725|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK301227|ZNF259|8882|zinc finger protein 259##BT006642|ZNF259|8882|zinc finger protein 259##BC004256|ZNF259|8882|zinc finger protein 259##BC011929|ZNF259|8882|zinc finger protein 259##BC012162|ZNF259|8882|zinc finger protein 259##BC017380|ZNF259|8882|zinc finger protein 259##AF019767|ZNF259|8882|zinc finger protein 259##BC111028|ZNF259|8882|zinc finger protein 259	1.838142	0.0	denovo_WM_7:51:0.337	denovo_WM_7:52:0.378	denovo_WM_7:66:0.348	denovo_WM_7:67:0.354
chr1	225616524	225616659	reg1010680.p1	4.905	+	NM_194442	-35	-	TSC_hg19_v1_chr1_-_225615798 NM_002296	-790	-	AK222834 TSC_hg19_v1_chr1_-_225615757 L25931 AB209514 BC020079 AK303589 AK312258	-862	-	AF519769 TSC_hg19_v1_chr1_-_225840803 AY345143 AK290179 BC095481 NM_001008493 NM_018212	224196	-	NM_001130440 NM_003133 TSC_hg19_v1_chr1_+_225965547 BC066957 BC008443 EF488978 AF070649 BC021995 BC106005 U20998 BC015094 AK289595 BC022415 BC045603	348941	+	TSC_hg19_v1_chr1_+_225965556 BC064351 AL050363 BC067845	348979	+	NM_194442|LBR|3930|lamin B receptor##NM_002296|LBR|3930|lamin B receptor##AK222834|LBR|3930|lamin B receptor##L25931|LBR|3930|lamin B receptor##AB209514|LBR|3930|lamin B receptor##BC020079|LBR|3930|lamin B receptor##AK303589|LBR|3930|lamin B receptor##AK312258|LBR|3930|lamin B receptor##AF519769|ENAH|55740|enabled homolog (Drosophila)##AY345143|ENAH|55740|enabled homolog (Drosophila)##AK290179|ENAH|55740|enabled homolog (Drosophila)##BC095481|ENAH|55740|enabled homolog (Drosophila)##NM_001008493|ENAH|55740|enabled homolog (Drosophila)##NM_018212|ENAH|55740|enabled homolog (Drosophila)##NM_001130440|SRP9|6726|signal recognition particle 9kDa##NM_003133|SRP9|6726|signal recognition particle 9kDa##BC066957|SRP9|6726|signal recognition particle 9kDa##BC008443|SRP9|6726|signal recognition particle 9kDa##EF488978|SRP9|6726|signal recognition particle 9kDa##AF070649|SRP9|6726|signal recognition particle 9kDa##BC021995|SRP9|6726|signal recognition particle 9kDa##BC106005|SRP9|6726|signal recognition particle 9kDa##U20998|SRP9|6726|signal recognition particle 9kDa##BC015094|SRP9|6726|signal recognition particle 9kDa##AK289595|SRP9|6726|signal recognition particle 9kDa##BC022415|SRP9|6726|signal recognition particle 9kDa##BC064351|SRP9|6726|signal recognition particle 9kDa##AL050363|SRP9|6726|signal recognition particle 9kDa##BC067845|SRP9|6726|signal recognition particle 9kDa	0.058266	0.0	
chr12	95964941	95965097	reg1005909.p1	4.905	+	AL136825 NM_032147	-19775	-	AK027434 TSC_hg19_v1_chr12_-_95942575 BC030704 NM_001042403	-22405	-	NM_006838 AK300836 TSC_hg19_v1_chr12_+_95867927 AK315559 U13261 AK055692 U29607 BC013782 AK091730 AX747149 AB463882 DQ891013 DQ894193	-97122	+	TSC_hg19_v1_chr12_-_96184346 AF297711 AK226070 AK315796	219350	-	BC136798 BC136799 AF278532 NM_021229 AF119916 TSC_hg19_v1_chr12_-_96184542	219507	-	TSC_hg19_v1_chr12_+_96252729 NM_003095 BC002505 X85372 AK311752 BC063397	287714	+	AL136825|USP44|84101|ubiquitin specific peptidase 44##NM_032147|USP44|84101|ubiquitin specific peptidase 44##AK027434|USP44|84101|ubiquitin specific peptidase 44##BC030704|USP44|84101|ubiquitin specific peptidase 44##NM_001042403|USP44|84101|ubiquitin specific peptidase 44##NM_006838|METAP2|10988|methionyl aminopeptidase 2##AK300836|METAP2|10988|methionyl aminopeptidase 2##AK315559|METAP2|10988|methionyl aminopeptidase 2##U13261|METAP2|10988|methionyl aminopeptidase 2##AK055692|METAP2|10988|methionyl aminopeptidase 2##BC013782|METAP2|10988|methionyl aminopeptidase 2##AK091730|METAP2|10988|methionyl aminopeptidase 2##DQ891013|METAP2|10988|methionyl aminopeptidase 2##DQ894193|METAP2|10988|methionyl aminopeptidase 2##AF297711|NTN4|59277|netrin 4##AK226070|NTN4|59277|netrin 4##AK315796|NTN4|59277|netrin 4##BC136798|NTN4|59277|netrin 4##BC136799|NTN4|59277|netrin 4##AF278532|NTN4|59277|netrin 4##NM_021229|NTN4|59277|netrin 4##AF119916|NTN4|59277|netrin 4##NM_003095|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC002505|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##X85372|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##AK311752|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F##BC063397|SNRPF|6636|small nuclear ribonucleoprotein polypeptide F	2.981526	0.0	denovo_WM_7:43:0.214	denovo_WM_7:83:0.223
chr1	41706095	41706259	reg1009952.p1	4.905	+	BC021252 NM_001172221	-77489	-	BC009752 NM_001031694	-79103	-	AK301497 AK299383 NM_001172222	-80606	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	1608	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	1659	-	BC034393 X55177 M65199 NM_001956	244142	-	BC021252|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172221|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC009752|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001031694|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK301497|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK299383|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172222|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2	0.988889	0.02309	denovo_WM_7:62:0.457	denovo_WM_7:63:0.532
chr3	5079559	5079682	reg1005826.p1	4.905	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-58266	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	-58439	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	-58504	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	84335	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	84471	+	TSC_hg19_v1_chr3_+_5229344 AK298511	149707	+	AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	0.0	0.047913	
chr10	12111369	12111438	reg1000982.p1	4.904	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	-396	+	TSC_hg19_v1_chr10_+_12110952 NM_018706	-467	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-26321	-	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	60250	+	TSC_hg19_v1_chr10_-_12237861 AF218818 AK291131 AF155832 AF161464	126463	-	TSC_hg19_v1_chr10_+_12237965 NM_006023 D14878 AK225634	126558	+	BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF218818|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AK291131|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF155832|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF161464|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##NM_006023|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##D14878|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK225634|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)	0.393509	0.0	
chr11	82774093	82774195	reg1010314.p1	4.904	+	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	-161370	+	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	-162627	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	-329246	-	AK312323 TSC_hg19_v1_chr11_-_82782872	8729	-	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	8753	-	BC031316 TSC_hg19_v1_chr11_+_82783118	8974	+	NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AK312323|RAB30|27314|RAB30, member RAS oncogene family##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##BC031316|LOC100506233|100506233|uncharacterized LOC100506233	0.99079	0.0	denovo_WM_7:-88:0.237	denovo_WM_7:-89:0.237	denovo_WM_7:-90:0.237	denovo_WM_7:-91:0.237
chr1	207093777	207093915	reg1011348.p1	4.904	+	NM_001185156 NM_001185157 NM_001185158 NM_006850 AY641440 AY641441 U16261 BC009681	-23046	+	AF224266 NM_018724 BC117386 BC117390 BC074948 BC074949 AB590628 AY876922 BC069311 BC069364 BC069398 BC069425 BC069449 BC069487 BC069523 BC069559 CU686884 HQ258739	-54671	+	AF453946 NM_013371	-91625	+	BT006797 CU675387 DQ890699 HM480394 AF057557 NM_001193338 GQ160900 GQ160901 TSC_hg19_v1_chr1_-_207095293 AK292007 AK297053 AK301187 AK316336 BC006401 NM_001142473 NM_005449	1441	-	BC110494 BC110495 CR749533 TSC_hg19_v1_chr1_-_207119812 AK309273 S62403 AF272149 X73079 AK225471 NM_002644	25915	-	AK298394 NM_001122979 NM_001170631 NM_032029	50110	-	NM_001185156|IL24|11009|interleukin 24##NM_001185157|IL24|11009|interleukin 24##NM_001185158|IL24|11009|interleukin 24##NM_006850|IL24|11009|interleukin 24##AY641440|IL24|11009|interleukin 24##AY641441|IL24|11009|interleukin 24##U16261|IL24|11009|interleukin 24##BC009681|IL24|11009|interleukin 24##AF224266|IL20|50604|interleukin 20##NM_018724|IL20|50604|interleukin 20##BC117386|IL20|50604|interleukin 20##BC117390|IL20|50604|interleukin 20##BC074948|IL20|50604|interleukin 20##BC074949|IL20|50604|interleukin 20##AY876922|IL20|50604|interleukin 20##BC069311|IL20|50604|interleukin 20##BC069364|IL20|50604|interleukin 20##BC069398|IL20|50604|interleukin 20##BC069425|IL20|50604|interleukin 20##BC069449|IL20|50604|interleukin 20##BC069487|IL20|50604|interleukin 20##BC069523|IL20|50604|interleukin 20##BC069559|IL20|50604|interleukin 20##HQ258739|IL20|50604|interleukin 20##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19##BT006797|FAIM3|9214|Fas apoptotic inhibitory molecule 3##DQ890699|FAIM3|9214|Fas apoptotic inhibitory molecule 3##HM480394|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AF057557|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001193338|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160900|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160901|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK292007|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK297053|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK301187|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK316336|FAIM3|9214|Fas apoptotic inhibitory molecule 3##BC006401|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001142473|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_005449|FAIM3|9214|Fas apoptotic inhibitory molecule 3##BC110494|PIGR|5284|polymeric immunoglobulin receptor##BC110495|PIGR|5284|polymeric immunoglobulin receptor##CR749533|PIGR|5284|polymeric immunoglobulin receptor##S62403|PIGR|5284|polymeric immunoglobulin receptor##AF272149|PIGR|5284|polymeric immunoglobulin receptor##X73079|PIGR|5284|polymeric immunoglobulin receptor##AK225471|PIGR|5284|polymeric immunoglobulin receptor##NM_002644|PIGR|5284|polymeric immunoglobulin receptor##AK298394|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001122979|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001170631|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_032029|FCAMR|83953|Fc receptor, IgA, IgM, high affinity	0.997023	0.0	denovo_WM_7:-36:0.313	denovo_WM_7:-37:0.313	denovo_WM_7:-38:0.313
chr14	64761664	64761834	reg1012055.p2	4.904	+	AF051427 AF051428 AF060555 NM_001040275 NM_001437	-647	-	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	-12086	-	NM_182910	-79078	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	43609	-	AK302747 NM_005956	93004	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	93347	+	AF051427|ESR2|2100|estrogen receptor 2 (ER beta)##AF051428|ESR2|2100|estrogen receptor 2 (ER beta)##AF060555|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001040275|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001437|ESR2|2100|estrogen receptor 2 (ER beta)##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase	0.0	0.996791	CTCF.p2:2:0.997
chr12	42863463	42863595	reg1006788.p2	4.903	+	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	-143551	+	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	-143654	-	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-231358	-	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	13887	-	AK122881 TSC_hg19_v1_chr12_-_42877772	14229	-	TSC_hg19_v1_chr12_-_42877811 NM_001144882 NM_001144883	14270	-	AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144882|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144883|PRICKLE1|144165|prickle homolog 1 (Drosophila)	0.0	0.0	
chr19	14688215	14688372	reg1012776.p1	4.903	+	CR450354 DQ891899 DQ895085 AF217091 TSC_hg19_v1_chr19_-_14682879 M33374 AF112200 BC002595 NM_004146	-5444	-	TSC_hg19_v1_chr19_+_14640435 AK001416 AK315412 BC007801 BC013881 BC005952 AF038958 BC002425 BC034484 AF222742 AX771269 AF038959 AB529027 DQ891949 DQ895135 EU832830 GQ129437	-47834	+	AK094087 TSC_hg19_v1_chr19_+_14640406	-47887	+	AK127809 NM_001204118 NM_207390 BC140848 BC144664 BC144665	5621	+	AY358817 AK290909 BC121130 BC121131 BC128053 BC148282 AK298653 AF239764 BC142639 AL832663 NM_032571	97384	-	AK291471 AK094028 AX748419 TSC_hg19_v1_chr19_+_14800878 AK307147 BC064571 NM_032433 BC048107 BX647475 AF372702 AK309208	112471	+	CR450354|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ891899|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ895085|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF217091|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##M33374|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF112200|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##BC002595|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##NM_004146|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AK001416|TECR|9524|trans-2,3-enoyl-CoA reductase##AK315412|TECR|9524|trans-2,3-enoyl-CoA reductase##BC007801|TECR|9524|trans-2,3-enoyl-CoA reductase##BC013881|TECR|9524|trans-2,3-enoyl-CoA reductase##BC005952|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038958|TECR|9524|trans-2,3-enoyl-CoA reductase##BC002425|TECR|9524|trans-2,3-enoyl-CoA reductase##BC034484|TECR|9524|trans-2,3-enoyl-CoA reductase##AF222742|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038959|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ891949|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ895135|TECR|9524|trans-2,3-enoyl-CoA reductase##EU832830|TECR|9524|trans-2,3-enoyl-CoA reductase##GQ129437|TECR|9524|trans-2,3-enoyl-CoA reductase##AK094087|TECR|9524|trans-2,3-enoyl-CoA reductase##NM_001204118|CLEC17A|388512|C-type lectin domain family 17, member A##NM_207390|CLEC17A|388512|C-type lectin domain family 17, member A##BC140848|CLEC17A|388512|C-type lectin domain family 17, member A##BC144664|CLEC17A|388512|C-type lectin domain family 17, member A##BC144665|CLEC17A|388512|C-type lectin domain family 17, member A##AY358817|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK290909|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121130|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121131|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC128053|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC148282|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK298653|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AF239764|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC142639|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AL832663|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##NM_032571|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK291471|ZNF333|84449|zinc finger protein 333##AK094028|ZNF333|84449|zinc finger protein 333##AK307147|ZNF333|84449|zinc finger protein 333##BC064571|ZNF333|84449|zinc finger protein 333##NM_032433|ZNF333|84449|zinc finger protein 333##BC048107|ZNF333|84449|zinc finger protein 333##BX647475|ZNF333|84449|zinc finger protein 333##AF372702|ZNF333|84449|zinc finger protein 333##AK309208|ZNF333|84449|zinc finger protein 333	1.495725	0.0	denovo_WM_7:-27:0.519	denovo_WM_7:46:0.455	denovo_WM_7:47:0.455
chr22	29177111	29177243	reg1008552.p1	4.903	+	TSC_hg19_v1_chr22_+_29168732 AK091133 AX746797 AK295140 CR456461 AB528096 CU013012 CU013300 CU691050	-8398	+	TSC_hg19_v1_chr22_+_29168718 BC065549 BC053874 BC040488 AK302925	-8478	+	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	-8533	+	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	19314	-	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	19390	-	TSC_hg19_v1_chr22_+_29196668 AF086143	19506	+	AK091133|CCDC117|150275|coiled-coil domain containing 117##AK295140|CCDC117|150275|coiled-coil domain containing 117##CR456461|CCDC117|150275|coiled-coil domain containing 117##BC065549|CCDC117|150275|coiled-coil domain containing 117##BC053874|CCDC117|150275|coiled-coil domain containing 117##BC040488|CCDC117|150275|coiled-coil domain containing 117##AK302925|CCDC117|150275|coiled-coil domain containing 117##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1	0.0	0.0	
chr3	191846040	191846147	reg1008913.p1	4.903	+	AY858112 NM_001083308	-667142	+	AK090630 AX746546 NM_198152	-797769	-	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	-798927	+	AK125307 NM_021032 TSC_hg19_v1_chr3_-_192126847	280750	-	AK312513 TSC_hg19_v1_chr3_-_192445344 BC022524 NM_004113	599272	-	BC013123 TSC_hg19_v1_chr3_-_192635639 AK290447 BX648517	789543	-	AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK125307|FGF12|2257|fibroblast growth factor 12##NM_021032|FGF12|2257|fibroblast growth factor 12##AK312513|FGF12|2257|fibroblast growth factor 12##BC022524|FGF12|2257|fibroblast growth factor 12##NM_004113|FGF12|2257|fibroblast growth factor 12##BC013123|MB21D2|151963|Mab-21 domain containing 2##AK290447|MB21D2|151963|Mab-21 domain containing 2##BX648517|MB21D2|151963|Mab-21 domain containing 2	0.019035	0.0	
chr5	51070899	51071079	reg1011893.p1	4.903	+	AK290742 TSC_hg19_v1_chr5_+_50679265 BC017027 U07559	-391736	+	BC031213 NM_002202	-392032	+	TSC_hg19_v1_chr5_+_49962920 AB463183 AM393004	-1108062	+	TSC_hg19_v1_chr5_+_52083769 AK056144 AY117399 NM_015946 AK300423 BC050277 NM_181501 BC137121 BC137122	1013000	+	AK025729 BC007650 TSC_hg19_v1_chr5_+_52095991 BC005889 BC007249 AF132951 AK312633 AF139828 BC022789	1024997	+	TSC_hg19_v1_chr5_+_52285182 NM_002203 AK307952 X17033 BC143505 BC143508 BC143509 BC143511 BC143512 AB385225	1214131	+	AK290742|ISL1|3670|ISL LIM homeobox 1##BC017027|ISL1|3670|ISL LIM homeobox 1##U07559|ISL1|3670|ISL LIM homeobox 1##BC031213|ISL1|3670|ISL LIM homeobox 1##NM_002202|ISL1|3670|ISL LIM homeobox 1##AM393004|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK056144|PELO|53918|pelota homolog (Drosophila)##AY117399|PELO|53918|pelota homolog (Drosophila)##NM_015946|PELO|53918|pelota homolog (Drosophila)##AK300423|ITGA1|3672|integrin, alpha 1##BC050277|ITGA1|3672|integrin, alpha 1##NM_181501|ITGA1|3672|integrin, alpha 1##BC137121|ITGA1|3672|integrin, alpha 1##BC137122|ITGA1|3672|integrin, alpha 1##AK025729|PELO|53918|pelota homolog (Drosophila)##BC007650|PELO|53918|pelota homolog (Drosophila)##BC005889|PELO|53918|pelota homolog (Drosophila)##BC007249|PELO|53918|pelota homolog (Drosophila)##AF132951|PELO|53918|pelota homolog (Drosophila)##AK312633|PELO|53918|pelota homolog (Drosophila)##AF139828|PELO|53918|pelota homolog (Drosophila)##BC022789|PELO|53918|pelota homolog (Drosophila)##NM_002203|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##AK307952|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##X17033|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143505|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143508|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143509|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143511|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143512|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	1.514752	0.0	denovo_WM_7:14:0.424	denovo_WM_7:26:0.219	denovo_WM_7:29:0.383
chr8	59572630	59572713	reg1008778.p2	4.903	+	NM_003580 TSC_hg19_v1_chr8_-_59572413	-260	-	BC041124 TSC_hg19_v1_chr8_-_59572386	-285	-	TSC_hg19_v1_chr8_-_59572336 AK292679 AK313991	-358	-	AB385385 DQ891665 DQ894852 AK000971 BC016665 AK302331 AB018351 NM_014729 TSC_hg19_v1_chr8_-_60031796	459001	-	BC015531 BC108929 BC082971 TSC_hg19_v1_chr8_-_61193958 BC069744 AK090655 AK289470 AK314538 AY075022 NM_004056	1621250	-	TSC_hg19_v1_chr8_+_61429488 NM_001242644 NM_002865	1856769	+	NM_003580|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC041124|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK292679|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK313991|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##DQ891665|TOX|9760|thymocyte selection-associated high mobility group box##DQ894852|TOX|9760|thymocyte selection-associated high mobility group box##AK000971|TOX|9760|thymocyte selection-associated high mobility group box##BC016665|TOX|9760|thymocyte selection-associated high mobility group box##AK302331|TOX|9760|thymocyte selection-associated high mobility group box##AB018351|TOX|9760|thymocyte selection-associated high mobility group box##NM_014729|TOX|9760|thymocyte selection-associated high mobility group box##BC015531|CA8|767|carbonic anhydrase VIII##BC108929|CA8|767|carbonic anhydrase VIII##BC069744|CA8|767|carbonic anhydrase VIII##AK090655|CA8|767|carbonic anhydrase VIII##AK289470|CA8|767|carbonic anhydrase VIII##AK314538|CA8|767|carbonic anhydrase VIII##AY075022|CA8|767|carbonic anhydrase VIII##NM_004056|CA8|767|carbonic anhydrase VIII##NM_001242644|RAB2A|5862|RAB2A, member RAS oncogene family##NM_002865|RAB2A|5862|RAB2A, member RAS oncogene family	0.99876	0.0	denovo_WM_7:-5:0.684	denovo_WM_7:-6:0.255
chr18	2547612	2547735	reg1011103.p1	4.902	+	NM_001117 BC093837 BC101803 S83513	-1642332	+	AK313050 NM_001099733	-1642730	+	TSC_hg19_v1_chr18_-_812273 AK314063 BC048960 BC031080 NM_005433	-1735370	-	AK290001 BC111020 NM_022840	23782	-	NM_006101 BC005239 TSC_hg19_v1_chr18_+_2571579 AK289396 AK313184 BC035617 BC010171	23872	+	TSC_hg19_v1_chr18_+_2571589 AF017790	23922	+	NM_001117|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##BC093837|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##BC101803|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##S83513|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##AK313050|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##NM_001099733|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##AK314063|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##BC048960|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##BC031080|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##NM_005433|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##AK290001|METTL4|64863|methyltransferase like 4##BC111020|METTL4|64863|methyltransferase like 4##NM_022840|METTL4|64863|methyltransferase like 4##NM_006101|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC005239|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK289396|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AK313184|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC035617|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##BC010171|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AF017790|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)	0.093139	0.159749	
chr3	196184029	196184209	reg1004959.p3	4.902	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-24786	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-24820	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-24836	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	46459	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	58094	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	111271	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.999916	0.0	
chr12	12770474	12770580	reg1014242.p1	4.901	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-5644	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-5732	+	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	-55127	-	AK096388 NM_006143	78593	-	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	99599	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	108329	+	BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1	1.982476	0.0	
chr1	64029530	64029675	reg1008512.p1	4.901	+	AK292220 NM_032437 AK092219 TSC_hg19_v1_chr1_+_63989242 AK315850 AB058702 BC015814	-40463	+	AK309622 AF175306 BC009929 TSC_hg19_v1_chr1_-_63988878 BC014385 AK312944 NM_001206739 NM_014288	-40721	-	AK022700 TSC_hg19_v1_chr1_+_63833329 BC001253 AF102851	-196272	+	TSC_hg19_v1_chr1_+_64059081 AK294186 BC019920 NM_002633 BC001756 BC067763 AK312254 M83088 BC090856 DQ890618 DQ893786 CU676478 BT006961	29423	+	AK293298 NM_001172819 AK298505	29912	+	NM_001172818 AK300100	59291	+	AK292220|EFCAB7|84455|EF-hand calcium binding domain 7##NM_032437|EFCAB7|84455|EF-hand calcium binding domain 7##AK092219|EFCAB7|84455|EF-hand calcium binding domain 7##AK315850|EFCAB7|84455|EF-hand calcium binding domain 7##AB058702|EFCAB7|84455|EF-hand calcium binding domain 7##BC015814|EFCAB7|84455|EF-hand calcium binding domain 7##AK309622|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##AF175306|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##BC009929|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##BC014385|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##AK312944|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##NM_001206739|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##NM_014288|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##AK022700|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##BC001253|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AF102851|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AK294186|PGM1|5236|phosphoglucomutase 1##BC019920|PGM1|5236|phosphoglucomutase 1##NM_002633|PGM1|5236|phosphoglucomutase 1##BC001756|PGM1|5236|phosphoglucomutase 1##BC067763|PGM1|5236|phosphoglucomutase 1##AK312254|PGM1|5236|phosphoglucomutase 1##M83088|PGM1|5236|phosphoglucomutase 1##BC090856|PGM1|5236|phosphoglucomutase 1##DQ890618|PGM1|5236|phosphoglucomutase 1##DQ893786|PGM1|5236|phosphoglucomutase 1##BT006961|PGM1|5236|phosphoglucomutase 1##AK293298|PGM1|5236|phosphoglucomutase 1##NM_001172819|PGM1|5236|phosphoglucomutase 1##AK298505|PGM1|5236|phosphoglucomutase 1##NM_001172818|PGM1|5236|phosphoglucomutase 1##AK300100|PGM1|5236|phosphoglucomutase 1	0.346765	0.0	
chr2	170658824	170658977	reg1009505.p1	4.901	+	NM_003142 TSC_hg19_v1_chr2_+_170655388 BC020818 D28394 J04205 BC001289 DQ185046 X13697	-3484	+	TSC_hg19_v1_chr2_+_170590477 BC010437	-68413	+	TSC_hg19_v1_chr2_+_170590371 NM_144711 AX721220	-68565	+	TSC_hg19_v1_chr2_+_170662051 M20328 M35261	3244	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	22485	-	TSC_hg19_v1_chr2_+_170683963 NM_172070	25058	+	NM_003142|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC020818|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##D28394|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##J04205|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC001289|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##DQ185046|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##X13697|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC010437|KLHL23|151230|kelch-like 23 (Drosophila)##NM_144711|KLHL23|151230|kelch-like 23 (Drosophila)##M20328|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M35261|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)	1.140566	0.0	denovo_WM_7:33:0.739
chr9	80445683	80445793	reg1009038.p2	4.901	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-182507	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-477390	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-653230	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	200446	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	405292	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	466320	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.0	0.0	
chr10	106097437	106097553	reg1011430.p2	4.900	+	BC070108 NM_033397	-3833	-	BC046194 NM_001191014 NM_001191015 BC023583 AK297522	-62591	+	AK300508 AK296266 TSC_hg19_v1_chr10_+_106034669 CU691188 AY191318	-62833	+	AB051541 TSC_hg19_v1_chr10_-_106098200 AK129877	694	-	TSC_hg19_v1_chr10_+_106113521 BC036225 NM_001008723 BX641120 AK093227 AX748000 BC109126	16046	+	AB028982 NM_014978	303363	+	BC070108|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##NM_033397|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC046194|GSTO2|119391|glutathione S-transferase omega 2##NM_001191014|GSTO2|119391|glutathione S-transferase omega 2##NM_001191015|GSTO2|119391|glutathione S-transferase omega 2##BC023583|GSTO2|119391|glutathione S-transferase omega 2##AK297522|GSTO2|119391|glutathione S-transferase omega 2##AK300508|GSTO2|119391|glutathione S-transferase omega 2##AK296266|GSTO2|119391|glutathione S-transferase omega 2##AY191318|GSTO2|119391|glutathione S-transferase omega 2##AB051541|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC036225|CCDC147|159686|coiled-coil domain containing 147##NM_001008723|CCDC147|159686|coiled-coil domain containing 147##BX641120|CCDC147|159686|coiled-coil domain containing 147##AK093227|CCDC147|159686|coiled-coil domain containing 147##BC109126|CCDC147|159686|coiled-coil domain containing 147##AB028982|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##NM_014978|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3	0.0	0.0	
chr11	93324583	93324705	reg1002684.p1	4.900	+	AF197137 TSC_hg19_v1_chr11_-_93276558 BC031564 NM_020179	-48109	-	TSC_hg19_v1_chr11_+_93063782 NM_181645 BC017929	-260801	+	TSC_hg19_v1_chr11_-_92931106 AY162216 NM_152313 BC047374	-393559	-	TSC_hg19_v1_chr11_+_93394847 NM_033395 BC015989 BC017394	70190	+	AB051518 TSC_hg19_v1_chr11_+_93394877	70245	+	AF275800 TSC_hg19_v1_chr11_-_93474661 BC001972 AF086435 AK027016 NM_024116	149962	-	AF197137|C11orf75|56935|chromosome 11 open reading frame 75##BC031564|C11orf75|56935|chromosome 11 open reading frame 75##NM_020179|C11orf75|56935|chromosome 11 open reading frame 75##NM_181645|CCDC67|159989|coiled-coil domain containing 67##BC017929|CCDC67|159989|coiled-coil domain containing 67##AY162216|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_152313|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##BC047374|SLC36A4|120103|solute carrier family 36 (proton/amino acid symporter), member 4##NM_033395|KIAA1731|85459|KIAA1731##BC015989|KIAA1731|85459|KIAA1731##BC017394|KIAA1731|85459|KIAA1731##AB051518|KIAA1731|85459|KIAA1731##AF275800|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##BC001972|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##AF086435|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##AK027016|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa##NM_024116|TAF1D|79101|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa	1.985054	0.0	
chr12	54623384	54623523	reg1011461.p2	4.900	+	BC088352 BC000417 TSC_hg19_v1_chr12_-_54582755 AK091468 AX747003 NM_001243789 NM_001243790 BC105607 AK001789 AK001235 AK222473 AK290274 NM_001243787 NM_001243788 NM_001243791 NM_014311	-40767	-	BC030212 TSC_hg19_v1_chr12_-_54541132	-82372	-	TSC_hg19_v1_chr12_+_54519846 BC009385	-103595	+	BC006821 NM_001127322 TSC_hg19_v1_chr12_-_54653330	29871	-	NM_001127321 TSC_hg19_v1_chr12_-_54653370	29918	-	TSC_hg19_v1_chr12_-_54673880 L07515 S62077	50429	-	BC088352|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC000417|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK091468|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243790|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC105607|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001235|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK222473|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK290274|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243787|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243788|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243791|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_014311|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC009385|LOC400043|400043|uncharacterized LOC400043##BC006821|CBX5|23468|chromobox homolog 5##NM_001127322|CBX5|23468|chromobox homolog 5##NM_001127321|CBX5|23468|chromobox homolog 5##L07515|CBX5|23468|chromobox homolog 5##S62077|CBX5|23468|chromobox homolog 5	0.992844	0.0	denovo_WM_7:-43:0.778
chr1	36126721	36126862	reg1012184.p1	4.900	+	NM_002794	-19347	-	TSC_hg19_v1_chr1_-_36107140 NM_001199779	-19625	-	BT007137 CR456862 AB464087 DQ893539 DQ896799 TSC_hg19_v1_chr1_-_36107121 D26599 BC101836 BC105126 BC107901 BC000268 AK296956 AB209470	-19708	-	TSC_hg19_v1_chr1_-_36184424 BC026909 AK294352	57621	-	TSC_hg19_v1_chr1_-_36184816 AK096303 NM_152374	58000	-	TSC_hg19_v1_chr1_-_36235569 BC113116 BC115023 BC115024 BC115025 BC115026 BC115027 BC137279 BC140789 AF297866 NM_001190481 NM_022111 BC038991 BC018670 BC062215 AK308193	108724	-	NM_002794|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##NM_001199779|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BT007137|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##CR456862|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##DQ893539|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##DQ896799|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##D26599|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BC101836|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BC105126|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BC107901|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BC000268|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##AK296956|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##AB209470|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BC026909|C1orf216|127703|chromosome 1 open reading frame 216##AK294352|C1orf216|127703|chromosome 1 open reading frame 216##AK096303|C1orf216|127703|chromosome 1 open reading frame 216##NM_152374|C1orf216|127703|chromosome 1 open reading frame 216##BC113116|CLSPN|63967|claspin##BC115023|CLSPN|63967|claspin##BC115024|CLSPN|63967|claspin##BC115025|CLSPN|63967|claspin##BC115026|CLSPN|63967|claspin##BC115027|CLSPN|63967|claspin##BC137279|CLSPN|63967|claspin##BC140789|CLSPN|63967|claspin##AF297866|CLSPN|63967|claspin##NM_001190481|CLSPN|63967|claspin##NM_022111|CLSPN|63967|claspin##BC038991|CLSPN|63967|claspin##BC018670|CLSPN|63967|claspin##BC062215|CLSPN|63967|claspin##AK308193|CLSPN|63967|claspin	0.988821	0.0	denovo_WM_7:52:0.565
chr18	9186083	9186248	reg1011857.p2	4.900	+	AY533564 NM_001204056	-48605	+	TSC_hg19_v1_chr18_+_9136811 NM_001083625 NM_015208 BC070234 AK024808 AY373757 BC057225 AL834204	-49374	+	TSC_hg19_v1_chr18_+_9102715 AK312129 BC001632 BC017487 M22538 AK291865 AB590136 BC071689 DQ892593 DQ895813 CR456928	-83445	+	TSC_hg19_v1_chr18_+_9334800 AK027629 AK075550 NM_020648 AF196834 AJ297391	148625	+	TSC_hg19_v1_chr18_+_9334831 BC020490 AK315751	148692	+	TSC_hg19_v1_chr18_+_9475545 NM_006788 BC013126	289432	+	AY533564|ANKRD12|23253|ankyrin repeat domain 12##NM_001204056|ANKRD12|23253|ankyrin repeat domain 12##NM_001083625|ANKRD12|23253|ankyrin repeat domain 12##NM_015208|ANKRD12|23253|ankyrin repeat domain 12##BC070234|ANKRD12|23253|ankyrin repeat domain 12##AK024808|ANKRD12|23253|ankyrin repeat domain 12##AY373757|ANKRD12|23253|ankyrin repeat domain 12##BC057225|ANKRD12|23253|ankyrin repeat domain 12##AL834204|ANKRD12|23253|ankyrin repeat domain 12##AK312129|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC001632|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC017487|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##M22538|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##AK291865|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC071689|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##DQ892593|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##DQ895813|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##CR456928|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##AK027629|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AK075550|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##NM_020648|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AF196834|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AJ297391|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##BC020490|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AK315751|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##NM_006788|RALBP1|10928|ralA binding protein 1##BC013126|RALBP1|10928|ralA binding protein 1	0.996443	0.0	
chr17	53592408	53592588	reg1010106.p1	4.899	+	CR541893 DQ892362 DQ895569 TSC_hg19_v1_chr17_-_53499293 X85750 AK312760 AK303810 BC026324 AY424289 NM_012329	-93243	-	TSC_hg19_v1_chr17_+_53344967 AK295726 AK074289	-247512	+	AK290043 TSC_hg19_v1_chr17_+_53343204	-249311	+	BC010128 AK001832 NM_018286	207651	-	AK095175 NM_001099640	216964	-	NM_021213 TSC_hg19_v1_chr17_+_53828339 AF087857 AF151638	235877	+	CR541893|MMD|23531|monocyte to macrophage differentiation-associated##DQ892362|MMD|23531|monocyte to macrophage differentiation-associated##DQ895569|MMD|23531|monocyte to macrophage differentiation-associated##X85750|MMD|23531|monocyte to macrophage differentiation-associated##AK312760|MMD|23531|monocyte to macrophage differentiation-associated##AK303810|MMD|23531|monocyte to macrophage differentiation-associated##BC026324|MMD|23531|monocyte to macrophage differentiation-associated##AY424289|MMD|23531|monocyte to macrophage differentiation-associated##NM_012329|MMD|23531|monocyte to macrophage differentiation-associated##AK295726|HLF|3131|hepatic leukemia factor##AK074289|HLF|3131|hepatic leukemia factor##AK290043|HLF|3131|hepatic leukemia factor##BC010128|TMEM100|55273|transmembrane protein 100##AK001832|TMEM100|55273|transmembrane protein 100##NM_018286|TMEM100|55273|transmembrane protein 100##AK095175|TMEM100|55273|transmembrane protein 100##NM_001099640|TMEM100|55273|transmembrane protein 100##NM_021213|PCTP|58488|phosphatidylcholine transfer protein##AF087857|PCTP|58488|phosphatidylcholine transfer protein##AF151638|PCTP|58488|phosphatidylcholine transfer protein	1.96015	0.0	denovo_WM_7:-29:0.956	denovo_WM_7:-44:0.940
chr17	55821926	55822099	reg1005795.p2	4.899	+	AK093888 AX748353 NM_170721	-487639	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-488039	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-658869	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	105392	-	AK000746 NM_017949	158737	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	210664	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	0.0	0.0	
chr19	732784	732944	reg1007118.p1	4.899	+	TSC_hg19_v1_chr19_+_708934 NM_001040134 NM_002579 AK299809 AK315168 BC032449 Y14770	-23915	+	BC137161 BC144505 NM_214710	-37404	-	TSC_hg19_v1_chr19_+_676391 NM_005860 AK291958 AK313341 BC005839 AY358917 BC033119 U76702	-56480	+	TSC_hg19_v1_chr19_+_751132 BC052236 BX648389 BC042125 NM_173481	18265	+	TSC_hg19_v1_chr19_+_797414 NM_002819 NM_031990 NM_031991 NM_175847 X66975 BC002397 BC023219	64552	+	TSC_hg19_v1_chr19_+_797446 AB208910	64581	+	NM_001040134|PALM|5064|paralemmin##NM_002579|PALM|5064|paralemmin##AK315168|PALM|5064|paralemmin##BC032449|PALM|5064|paralemmin##Y14770|PALM|5064|paralemmin##BC137161|PRSS57|400668|protease, serine, 57##BC144505|PRSS57|400668|protease, serine, 57##NM_214710|PRSS57|400668|protease, serine, 57##NM_005860|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##AK291958|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##AK313341|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##BC005839|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##AY358917|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##BC033119|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##U76702|FSTL3|10272|follistatin-like 3 (secreted glycoprotein)##BC052236|C19orf21|126353|chromosome 19 open reading frame 21##BX648389|C19orf21|126353|chromosome 19 open reading frame 21##BC042125|C19orf21|126353|chromosome 19 open reading frame 21##NM_173481|C19orf21|126353|chromosome 19 open reading frame 21##NM_002819|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031990|PTBP1|5725|polypyrimidine tract binding protein 1##NM_031991|PTBP1|5725|polypyrimidine tract binding protein 1##NM_175847|PTBP1|5725|polypyrimidine tract binding protein 1##X66975|PTBP1|5725|polypyrimidine tract binding protein 1##BC002397|PTBP1|5725|polypyrimidine tract binding protein 1##BC023219|PTBP1|5725|polypyrimidine tract binding protein 1##AB208910|PTBP1|5725|polypyrimidine tract binding protein 1	0.910399	0.0	denovo_WM_7:78:0.284
chr2	20642808	20642988	reg1000555.p1	4.899	+	TSC_hg19_v1_chr2_-_20550436 AK304198 AK093847 AX748335	-92479	-	D87078 AF315591 NM_015317 BC112046 BC112048 BC143550 BC143552	-115765	-	AF272350 TSC_hg19_v1_chr2_-_20512079	-130849	-	AK310813 AK312487 AK124398 AK297495 AK309991 BC066954 NM_004040	3934	+	TSC_hg19_v1_chr2_-_20850859 AB527583 CU691206 CU693338 BC057389 BC038847 BC050636 BC027947 AK024311 AK314383 NM_022460	207950	-	AF522369 NM_182828	223525	+	AK304198|PUM2|23369|pumilio homolog 2 (Drosophila)##AK093847|PUM2|23369|pumilio homolog 2 (Drosophila)##D87078|PUM2|23369|pumilio homolog 2 (Drosophila)##AF315591|PUM2|23369|pumilio homolog 2 (Drosophila)##NM_015317|PUM2|23369|pumilio homolog 2 (Drosophila)##BC112046|PUM2|23369|pumilio homolog 2 (Drosophila)##BC112048|PUM2|23369|pumilio homolog 2 (Drosophila)##BC143550|PUM2|23369|pumilio homolog 2 (Drosophila)##BC143552|PUM2|23369|pumilio homolog 2 (Drosophila)##AF272350|PUM2|23369|pumilio homolog 2 (Drosophila)##AK312487|RHOB|388|ras homolog gene family, member B##AK124398|RHOB|388|ras homolog gene family, member B##BC066954|RHOB|388|ras homolog gene family, member B##NM_004040|RHOB|388|ras homolog gene family, member B##BC057389|HS1BP3|64342|HCLS1 binding protein 3##BC038847|HS1BP3|64342|HCLS1 binding protein 3##BC050636|HS1BP3|64342|HCLS1 binding protein 3##BC027947|HS1BP3|64342|HCLS1 binding protein 3##AK024311|HS1BP3|64342|HCLS1 binding protein 3##AK314383|HS1BP3|64342|HCLS1 binding protein 3##NM_022460|HS1BP3|64342|HCLS1 binding protein 3##AF522369|GDF7|151449|growth differentiation factor 7##NM_182828|GDF7|151449|growth differentiation factor 7	0.0	0.0	
chr9	35833974	35834133	reg1011531.p1	4.899	+	TSC_hg19_v1_chr9_+_35829375 BC064951 NM_001042590 BC082765	-4575	+	TSC_hg19_v1_chr9_+_35829262 NM_016446 BC043384 NM_001042589 AF188239	-4810	+	BC146808 BX648702 NM_001012446	-5318	-	AY726589 NM_001004487 BC136715 BC136716	36335	-	AY358408 NM_001039792	72135	+	HQ258184 BC104869 BC113651 NM_019897	124069	-	BC064951|TMEM8B|51754|transmembrane protein 8B##NM_001042590|TMEM8B|51754|transmembrane protein 8B##BC082765|TMEM8B|51754|transmembrane protein 8B##NM_016446|TMEM8B|51754|transmembrane protein 8B##BC043384|TMEM8B|51754|transmembrane protein 8B##NM_001042589|TMEM8B|51754|transmembrane protein 8B##AF188239|TMEM8B|51754|transmembrane protein 8B##BC146808|C9orf128|392307|chromosome 9 open reading frame 128##BX648702|C9orf128|392307|chromosome 9 open reading frame 128##NM_001012446|C9orf128|392307|chromosome 9 open reading frame 128##AY726589|OR13J1|392309|olfactory receptor, family 13, subfamily J, member 1##NM_001004487|OR13J1|392309|olfactory receptor, family 13, subfamily J, member 1##BC136715|OR13J1|392309|olfactory receptor, family 13, subfamily J, member 1##BC136716|OR13J1|392309|olfactory receptor, family 13, subfamily J, member 1##AY358408|HRCT1|646962|histidine rich carboxyl terminus 1##NM_001039792|HRCT1|646962|histidine rich carboxyl terminus 1##HQ258184|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##BC104869|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##BC113651|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##NM_019897|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2	0.0	0.0	
chr14	23275292	23275362	reg1008185.p1	4.898	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-39482	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-208138	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-217193	-	TSC_hg19_v1_chr14_-_23284568 AK025377	9252	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	9305	-	AB020532 BX161519 NM_001126105	9731	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	2.329286	0.0	denovo_WM_7:73:0.272	denovo_WM_7:88:0.335
chr14	69255786	69255920	reg1010893.p2	4.898	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-969333	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-972554	-	AK315462 NM_152443	-1087251	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	3867	-	NM_001244698 NM_004926	4777	-	NM_001244701 AB528867	7131	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.211145	
chr17	79413432	79413578	reg1007524.p1	4.898	+	NM_001080519	-39966	+	AK096111 NM_178520	-109032	-	TSC_hg19_v1_chr17_-_79269100 NM_001037984 NM_138570	-144412	-	TSC_hg19_v1_chr17_-_79478238 BC009544 BC010417 BC018861 M16247	64905	-	BC023548 TSC_hg19_v1_chr17_-_79478994 BC039144	65473	-	BC001920 BC015779 BC053572 BC015005 BC009848 BC010999 BC007442 BC012050 BC018774 BC015695 BC000292 AK304637 TSC_hg19_v1_chr17_-_79479829 AK291937 AK301175 X04098	66300	-	NM_001080519|BAHCC1|57597|BAH domain and coiled-coil containing 1##AK096111|TMEM105|284186|transmembrane protein 105##NM_178520|TMEM105|284186|transmembrane protein 105##NM_001037984|SLC38A10|124565|solute carrier family 38, member 10##NM_138570|SLC38A10|124565|solute carrier family 38, member 10##BC009544|ACTG1|71|actin, gamma 1##BC010417|ACTG1|71|actin, gamma 1##BC018861|ACTG1|71|actin, gamma 1##M16247|ACTG1|71|actin, gamma 1##BC023548|ACTG1|71|actin, gamma 1##BC039144|ACTG1|71|actin, gamma 1##BC001920|ACTG1|71|actin, gamma 1##BC015779|ACTG1|71|actin, gamma 1##BC053572|ACTG1|71|actin, gamma 1##BC015005|ACTG1|71|actin, gamma 1##BC009848|ACTG1|71|actin, gamma 1##BC010999|ACTG1|71|actin, gamma 1##BC007442|ACTG1|71|actin, gamma 1##BC012050|ACTG1|71|actin, gamma 1##BC018774|ACTG1|71|actin, gamma 1##BC015695|ACTG1|71|actin, gamma 1##BC000292|ACTG1|71|actin, gamma 1##AK304637|ACTG1|71|actin, gamma 1##AK291937|ACTG1|71|actin, gamma 1##AK301175|ACTG1|71|actin, gamma 1##X04098|ACTG1|71|actin, gamma 1	1.993499	0.0	
chr15	51200780	51200883	reg1009369.p2	4.897	+	TSC_hg19_v1_chr15_-_51200797 AK091906	-70	-	TSC_hg19_v1_chr15_-_51057895 AK075454 AY169314 NM_032802	-142928	-	TSC_hg19_v1_chr15_-_51057864 BC025740 AK315651 AJ345028	-142972	-	TSC_hg19_v1_chr15_+_51200903 AK297290 NM_001252127 NM_007347 BC126308 BC130466 BC144025 BC144030 AF155156 AB030653 HQ258532 CR749604	96	+	BC127701 BC127702 TSC_hg19_v1_chr15_-_51386865 AK123281	186019	-	AY517501 NM_207381	196641	-	AK075454|SPPL2A|84888|signal peptide peptidase-like 2A##AY169314|SPPL2A|84888|signal peptide peptidase-like 2A##NM_032802|SPPL2A|84888|signal peptide peptidase-like 2A##BC025740|SPPL2A|84888|signal peptide peptidase-like 2A##AK315651|SPPL2A|84888|signal peptide peptidase-like 2A##AJ345028|SPPL2A|84888|signal peptide peptidase-like 2A##AK297290|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_001252127|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_007347|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC126308|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC130466|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144025|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144030|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AF155156|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AB030653|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##HQ258532|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##CR749604|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC127701|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##BC127702|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##AK123281|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##AY517501|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##NM_207381|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3	0.0	0.99583	CTCF.p2:-28:0.996
chr17	14830022	14830133	reg1010306.p2	4.897	+	TSC_hg19_v1_chr17_+_14204397 AK023723 BC063301 AF105377 NM_006041 BC069664 BC069725	-625632	+	NM_001007530 BC146859 BC071823	-689914	-	TSC_hg19_v1_chr17_+_13972841 BC000060 BC006394 U09466 AK294213 AK295925 BT006985 CU674016 DQ893604 DQ895073	-857196	+	CR541931 CR541953 M94048 NM_153322 S61788 TSC_hg19_v1_chr17_-_15164113	334003	-	AK300690 L03203 TSC_hg19_v1_chr17_-_15165834	335742	-	AK290640 TSC_hg19_v1_chr17_-_15165870 BC019040	335788	-	AK023723|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC063301|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##AF105377|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##NM_006041|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC069664|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC069725|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##NM_001007530|CDRT15|146822|CMT1A duplicated region transcript 15##BC146859|CDRT15|146822|CMT1A duplicated region transcript 15##BC071823|CDRT15|146822|CMT1A duplicated region transcript 15##BC000060|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##BC006394|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##U09466|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK294213|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK295925|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##BT006985|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##DQ893604|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##DQ895073|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##CR541931|PMP22|5376|peripheral myelin protein 22##CR541953|PMP22|5376|peripheral myelin protein 22##M94048|PMP22|5376|peripheral myelin protein 22##NM_153322|PMP22|5376|peripheral myelin protein 22##S61788|PMP22|5376|peripheral myelin protein 22##AK300690|PMP22|5376|peripheral myelin protein 22##L03203|PMP22|5376|peripheral myelin protein 22##AK290640|PMP22|5376|peripheral myelin protein 22##BC019040|PMP22|5376|peripheral myelin protein 22	0.0	0.930622	CTCF.p2:-30:0.931
chr19	8276741	8276881	reg1011067.p1	4.897	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-2563	+	AB384635 AB053450 BC153882 NM_032447	-64436	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-158864	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	96398	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	109446	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	109475	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.997272	0.0	
chr3	4793351	4793483	reg1007759.p2	4.897	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-258221	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-258289	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-258386	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	227699	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	227764	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	227937	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.0	0.0	
chr5	126307936	126308058	reg1010204.p1	4.897	+	TSC_hg19_v1_chr5_+_126113050 AB527547 DQ891592 EU176582 CU680274	-194873	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	-195115	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	-195166	+	BC146948 BC146964 AF055007 TSC_hg19_v1_chr5_-_126366251 BC047569 AK290129	58178	-	NM_178450	58442	-	AK126569 NM_001164478 NM_001164479	101180	-	DQ891592|LMNB1|4001|lamin B1##EU176582|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##BC146948|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC146964|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AF055007|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##BC047569|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK290129|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##NM_178450|MARCH3|115123|membrane-associated ring finger (C3HC4) 3##AK126569|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164478|C5orf63|401207|chromosome 5 open reading frame 63##NM_001164479|C5orf63|401207|chromosome 5 open reading frame 63	0.996882	0.0	
chr6	32153454	32153565	reg1011309.p1	4.897	+	M91211 AB527569 CU676626 DQ893575 DQ896821 EU428811 EU428812 EU428813 EU428814 EU428815 EU428816 EU826616 EU826617 EU826618 EU826619 EU826620 AY755619 AY755620 AY755621 AY755622 AY755623 AY755624 AY755625 AY755626 AY755627 AY755628 DQ104251 DQ104252 DQ104253 DQ104254 EU117141 AJ133822 BC020669 FJ545655 HQ148135 GU139370 GU139371 GU139372 GU139373 GU139374 GU139375 GU139376 GU139377 GU139378 GU139379 GU139380 GU139381 GU139382 GU139383 GU139384 AB036432 AB061668 AB061669 HQ148133 HQ148134 AK313178 AK298100 NM_001136 NM_001206929 NM_001206932 NM_001206934 NM_001206936 NM_001206940 NM_001206954 NM_001206966 NM_172197	-1462	-	TSC_hg19_v1_chr6_+_32146212 AK311221 BC127651 BC127652 BC148255 BC119741 BC119742 AK296212 AK311859 BC004155 AB463595 AB056869 BT007105	-7260	+	NM_006913 TSC_hg19_v1_chr6_+_32146181 BC111392	-7324	+	TSC_hg19_v1_chr6_-_32157957 AB464061 BT009823 CU687362 BC082261 BC003111 NM_002586	4311	-	AB527914 CU676292 AF155657 BC018724 TSC_hg19_v1_chr6_-_32160421	6856	-	TSC_hg19_v1_chr6_-_32160693 AJ243938 AK313922	7167	-	M91211|AGER|177|advanced glycosylation end product-specific receptor##DQ893575|AGER|177|advanced glycosylation end product-specific receptor##DQ896821|AGER|177|advanced glycosylation end product-specific receptor##EU428811|AGER|177|advanced glycosylation end product-specific receptor##EU428812|AGER|177|advanced glycosylation end product-specific receptor##EU428813|AGER|177|advanced glycosylation end product-specific receptor##EU428814|AGER|177|advanced glycosylation end product-specific receptor##EU428815|AGER|177|advanced glycosylation end product-specific receptor##EU428816|AGER|177|advanced glycosylation end product-specific receptor##EU826616|AGER|177|advanced glycosylation end product-specific receptor##EU826617|AGER|177|advanced glycosylation end product-specific receptor##EU826618|AGER|177|advanced glycosylation end product-specific receptor##EU826619|AGER|177|advanced glycosylation end product-specific receptor##EU826620|AGER|177|advanced glycosylation end product-specific receptor##AY755619|AGER|177|advanced glycosylation end product-specific receptor##AY755620|AGER|177|advanced glycosylation end product-specific receptor##AY755621|AGER|177|advanced glycosylation end product-specific receptor##AY755622|AGER|177|advanced glycosylation end product-specific receptor##AY755623|AGER|177|advanced glycosylation end product-specific receptor##AY755624|AGER|177|advanced glycosylation end product-specific receptor##AY755625|AGER|177|advanced glycosylation end product-specific receptor##AY755626|AGER|177|advanced glycosylation end product-specific receptor##AY755627|AGER|177|advanced glycosylation end product-specific receptor##AY755628|AGER|177|advanced glycosylation end product-specific receptor##DQ104251|AGER|177|advanced glycosylation end product-specific receptor##DQ104252|AGER|177|advanced glycosylation end product-specific receptor##DQ104253|AGER|177|advanced glycosylation end product-specific receptor##DQ104254|AGER|177|advanced glycosylation end product-specific receptor##EU117141|AGER|177|advanced glycosylation end product-specific receptor##AJ133822|AGER|177|advanced glycosylation end product-specific receptor##BC020669|AGER|177|advanced glycosylation end product-specific receptor##FJ545655|AGER|177|advanced glycosylation end product-specific receptor##HQ148135|AGER|177|advanced glycosylation end product-specific receptor##GU139370|AGER|177|advanced glycosylation end product-specific receptor##GU139371|AGER|177|advanced glycosylation end product-specific receptor##GU139372|AGER|177|advanced glycosylation end product-specific receptor##GU139373|AGER|177|advanced glycosylation end product-specific receptor##GU139374|AGER|177|advanced glycosylation end product-specific receptor##GU139375|AGER|177|advanced glycosylation end product-specific receptor##GU139376|AGER|177|advanced glycosylation end product-specific receptor##GU139377|AGER|177|advanced glycosylation end product-specific receptor##GU139378|AGER|177|advanced glycosylation end product-specific receptor##GU139379|AGER|177|advanced glycosylation end product-specific receptor##GU139381|AGER|177|advanced glycosylation end product-specific receptor##GU139382|AGER|177|advanced glycosylation end product-specific receptor##AB036432|AGER|177|advanced glycosylation end product-specific receptor##AB061668|AGER|177|advanced glycosylation end product-specific receptor##AB061669|AGER|177|advanced glycosylation end product-specific receptor##HQ148133|AGER|177|advanced glycosylation end product-specific receptor##HQ148134|AGER|177|advanced glycosylation end product-specific receptor##AK313178|AGER|177|advanced glycosylation end product-specific receptor##AK298100|AGER|177|advanced glycosylation end product-specific receptor##NM_001136|AGER|177|advanced glycosylation end product-specific receptor##NM_001206929|AGER|177|advanced glycosylation end product-specific receptor##NM_001206932|AGER|177|advanced glycosylation end product-specific receptor##NM_001206934|AGER|177|advanced glycosylation end product-specific receptor##NM_001206936|AGER|177|advanced glycosylation end product-specific receptor##NM_001206940|AGER|177|advanced glycosylation end product-specific receptor##NM_001206954|AGER|177|advanced glycosylation end product-specific receptor##NM_001206966|AGER|177|advanced glycosylation end product-specific receptor##NM_172197|AGER|177|advanced glycosylation end product-specific receptor##BC127651|RNF5|6048|ring finger protein 5##BC127652|RNF5|6048|ring finger protein 5##BC148255|RNF5|6048|ring finger protein 5##BC119741|RNF5|6048|ring finger protein 5##BC119742|RNF5|6048|ring finger protein 5##AK296212|RNF5|6048|ring finger protein 5##AK311859|RNF5|6048|ring finger protein 5##BC004155|RNF5|6048|ring finger protein 5##AB056869|RNF5|6048|ring finger protein 5##BT007105|RNF5|6048|ring finger protein 5##NM_006913|RNF5|6048|ring finger protein 5##BC111392|RNF5|6048|ring finger protein 5##BT009823|PBX2|5089|pre-B-cell leukemia homeobox 2##BC082261|PBX2|5089|pre-B-cell leukemia homeobox 2##BC003111|PBX2|5089|pre-B-cell leukemia homeobox 2##NM_002586|PBX2|5089|pre-B-cell leukemia homeobox 2##AF155657|GPSM3|63940|G-protein signaling modulator 3##BC018724|GPSM3|63940|G-protein signaling modulator 3##AJ243938|GPSM3|63940|G-protein signaling modulator 3##AK313922|GPSM3|63940|G-protein signaling modulator 3	1.008085	0.0	denovo_WM_7:-26:0.621	denovo_WM_7:-27:0.297
chr6	45798796	45798976	reg1001381.p2	4.897	+	TSC_hg19_v1_chr6_+_45390379 L40992	-408474	+	TSC_hg19_v1_chr6_+_45390325 BC108919 BC108920	-408581	+	TSC_hg19_v1_chr6_+_45389825 NM_004348	-409021	+	DQ892643 DQ895881 CU690236 AF176920 AK314416 AK075163 TSC_hg19_v1_chr6_-_45983598 AK075144 AF216941 AK222544 BC035968 DQ679794 AK223130 NM_016929	184591	-	AY032602 AK097048 NM_001114086	249145	-	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	298828	+	L40992|RUNX2|860|runt-related transcription factor 2##BC108919|RUNX2|860|runt-related transcription factor 2##BC108920|RUNX2|860|runt-related transcription factor 2##NM_004348|RUNX2|860|runt-related transcription factor 2##DQ892643|CLIC5|53405|chloride intracellular channel 5##DQ895881|CLIC5|53405|chloride intracellular channel 5##AF176920|CLIC5|53405|chloride intracellular channel 5##AK314416|CLIC5|53405|chloride intracellular channel 5##AK075163|CLIC5|53405|chloride intracellular channel 5##AK075144|CLIC5|53405|chloride intracellular channel 5##AF216941|CLIC5|53405|chloride intracellular channel 5##AK222544|CLIC5|53405|chloride intracellular channel 5##BC035968|CLIC5|53405|chloride intracellular channel 5##DQ679794|CLIC5|53405|chloride intracellular channel 5##AK223130|CLIC5|53405|chloride intracellular channel 5##NM_016929|CLIC5|53405|chloride intracellular channel 5##AY032602|CLIC5|53405|chloride intracellular channel 5##AK097048|CLIC5|53405|chloride intracellular channel 5##NM_001114086|CLIC5|53405|chloride intracellular channel 5##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	0.0	0.0	
chr16	29655605	29655714	reg1006969.p1	4.896	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	-30617	-	TSC_hg19_v1_chr16_-_29606667 AK316536	-48986	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-49314	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	18673	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	18906	+	TSC_hg19_v1_chr16_+_29674568 J04168 J04536 NM_003123	18914	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin##J04536|SPN|6693|sialophorin##NM_003123|SPN|6693|sialophorin	1.764988	0.0	denovo_WM_7:-52:0.286	denovo_WM_7:-53:0.344	denovo_WM_7:-54:0.238	denovo_WM_7:-67:0.295	denovo_WM_7:-68:0.301	denovo_WM_7:-69:0.266
chr4	71534013	71534193	reg1009922.p2	4.896	+	TSC_hg19_v1_chr4_-_71532347 NM_144646	-1757	-	AB527699 DQ884395 TSC_hg19_v1_chr4_-_71532226 AK312014 BC038982	-1869	-	AF125373 NM_031889	-39643	+	NM_020368 AF271212 TSC_hg19_v1_chr4_+_71554248 AK026909 BC004546 AL136590 AB463337 AM392862 AM393072 AM393229 DQ892999 EU176750 CU678762 CR533544	20191	+	TSC_hg19_v1_chr4_+_71570618 NM_001130709	36531	+	TSC_hg19_v1_chr4_+_71570768 AK000911 AF112221	36716	+	NM_144646|IGJ|3512|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides##DQ884395|IGJ|3512|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides##AK312014|IGJ|3512|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides##BC038982|IGJ|3512|immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides##AF125373|ENAM|10117|enamelin##NM_031889|ENAM|10117|enamelin##NM_020368|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##AF271212|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##AK026909|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##BC004546|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##AL136590|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##AM392862|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##AM393072|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##AM393229|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##DQ892999|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##EU176750|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##CR533544|UTP3|57050|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)##NM_001130709|RUFY3|22902|RUN and FYVE domain containing 3##AK000911|RUFY3|22902|RUN and FYVE domain containing 3##AF112221|RUFY3|22902|RUN and FYVE domain containing 3	0.133851	0.0	
chr7	33527707	33527853	reg1011665.p1	4.896	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-358699	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-378803	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-425458	-	AK289963 NM_133468 AK096150 BC060868	417362	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	1170139	+	DQ287932 NM_015283	1549872	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	0.0	0.0	
chr1	44238702	44238827	reg1007493.p1	4.895	+	AK301829 AY051143 NM_006279 NM_174963 NM_174964 NM_174965 NM_174966 NM_174967 NM_174968 NM_174969 NM_174970 NM_174971 TSC_hg19_v1_chr1_+_44173217 BC050380	-65546	+	TSC_hg19_v1_chr1_-_44173037 BC094867	-65741	-	BC002558 TSC_hg19_v1_chr1_+_44115828 AB014577	-122920	+	AF120274 NM_001136215 NM_057090 NM_057091	160227	+	TSC_hg19_v1_chr1_+_44412483 NM_014652	173697	+	TSC_hg19_v1_chr1_+_44412625 AB018267	173846	+	AK301829|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##AY051143|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_006279|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174963|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174964|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174965|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174966|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174967|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174968|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174969|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174970|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##NM_174971|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC050380|ST3GAL3|6487|ST3 beta-galactoside alpha-2,3-sialyltransferase 3##BC094867|LOC100132774|100132774|uncharacterized LOC100132774##BC002558|KDM4A|9682|lysine (K)-specific demethylase 4A##AB014577|KDM4A|9682|lysine (K)-specific demethylase 4A##AF120274|ARTN|9048|artemin##NM_001136215|ARTN|9048|artemin##NM_057090|ARTN|9048|artemin##NM_057091|ARTN|9048|artemin##NM_014652|IPO13|9670|importin 13##AB018267|IPO13|9670|importin 13	0.0	0.0	
chr1	46647985	46648103	reg1008425.p2	4.895	+	TSC_hg19_v1_chr1_+_46646203 BC007290 BC000695 BC013404 AF065388 AF133425	-1834	+	NM_005727 AK313774	-7291	+	TSC_hg19_v1_chr1_-_46598298 CR749649 BC021622 NM_003629 EU832448 EU832531 BX537388 BC094768 AK313726 NM_001114172	-49566	-	AB057356 TSC_hg19_v1_chr1_-_46664095 AY358592 AK000284 AK225033	16031	-	TSC_hg19_v1_chr1_-_46664112 BC001471 NM_017739	16081	-	AK057892 NM_001013615 TSC_hg19_v1_chr1_+_46669021 BC034422 AB463505	21007	+	BC007290|TSPAN1|10103|tetraspanin 1##BC000695|TSPAN1|10103|tetraspanin 1##BC013404|TSPAN1|10103|tetraspanin 1##AF065388|TSPAN1|10103|tetraspanin 1##AF133425|TSPAN1|10103|tetraspanin 1##NM_005727|TSPAN1|10103|tetraspanin 1##AK313774|TSPAN1|10103|tetraspanin 1##CR749649|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC021622|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_003629|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832448|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832531|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BX537388|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC094768|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AK313726|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_001114172|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AB057356|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AY358592|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK000284|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK225033|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##BC001471|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_017739|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK057892|C1orf190|541468|chromosome 1 open reading frame 190##NM_001013615|C1orf190|541468|chromosome 1 open reading frame 190##BC034422|C1orf190|541468|chromosome 1 open reading frame 190	0.989226	0.0	denovo_WM_7:-59:0.283	denovo_WM_7:-60:0.297	denovo_WM_7:-63:0.286
chr2	32437533	32437679	reg1009231.p1	4.895	+	TSC_hg19_v1_chr2_+_32390932 NM_001193513 NM_001193514 NM_001193515 NM_017964 AK055663 AK096672 AK127716 AK304225 BC066903 EF560719 EF560726 AL832755 AF173387	-46677	+	TSC_hg19_v1_chr2_+_32288665 AB029006 BC150260 NM_014946 NM_199436 AJ246001	-148906	+	TSC_hg19_v1_chr2_-_32264863 AF226998 NM_032574 AK295755 BC015970	-172738	-	AY358152 BC031555 AK292673 AK314762 AK095467 NM_001199138	52323	-	AY035391 NM_001199139 AY027787 AY027788 AY027789 AY027790 NM_021209 AF376061	53199	-	TSC_hg19_v1_chr2_+_32502966 NM_032312	65356	+	NM_001193513|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193514|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_001193515|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##NM_017964|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK055663|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK096672|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK127716|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AK304225|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##BC066903|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560719|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##EF560726|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AL832755|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AF173387|SLC30A6|55676|solute carrier family 30 (zinc transporter), member 6##AB029006|SPAST|6683|spastin##BC150260|SPAST|6683|spastin##NM_014946|SPAST|6683|spastin##NM_199436|SPAST|6683|spastin##AJ246001|SPAST|6683|spastin##AF226998|DPY30|84661|dpy-30 homolog (C. elegans)##NM_032574|DPY30|84661|dpy-30 homolog (C. elegans)##BC015970|DPY30|84661|dpy-30 homolog (C. elegans)##AY358152|NLRC4|58484|NLR family, CARD domain containing 4##BC031555|NLRC4|58484|NLR family, CARD domain containing 4##AK292673|NLRC4|58484|NLR family, CARD domain containing 4##AK314762|NLRC4|58484|NLR family, CARD domain containing 4##AK095467|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199138|NLRC4|58484|NLR family, CARD domain containing 4##AY035391|NLRC4|58484|NLR family, CARD domain containing 4##NM_001199139|NLRC4|58484|NLR family, CARD domain containing 4##AY027787|NLRC4|58484|NLR family, CARD domain containing 4##AY027788|NLRC4|58484|NLR family, CARD domain containing 4##AY027789|NLRC4|58484|NLR family, CARD domain containing 4##AY027790|NLRC4|58484|NLR family, CARD domain containing 4##NM_021209|NLRC4|58484|NLR family, CARD domain containing 4##AF376061|NLRC4|58484|NLR family, CARD domain containing 4##NM_032312|YIPF4|84272|Yip1 domain family, member 4	1.947879	0.104431	denovo_WM_7:52:0.860	denovo_WM_7:67:0.860
chr3	114811087	114811219	reg1009052.p2	4.895	+	BC090936 NM_001164343	-20913	-	AK225788 NM_001164344 NM_001164345	-333033	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	-467359	-	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	54961	-	NM_001130064 NM_002045	530997	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	531266	+	BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43	0.240175	0.882644	CTCF.p2:11:0.883
chr11	35062164	35062256	reg1009046.p1	4.894	+	TSC_hg19_v1_chr11_+_34938187 BX648910 U82328 BC010389 AK312463 AK301384 AF001437 CU679691 Y13145	-124053	+	CU678963 AB590513 TSC_hg19_v1_chr11_-_34937923 BC017594 BC009077 AK302225 AK225249 AF132963 BC008440 AK292648 NM_015957	-124321	-	NM_001135024 NM_001166158 NM_003477	-124534	+	TSC_hg19_v1_chr11_+_35160385 AL832642 NM_000610 NM_001001389 NM_001001390 NM_001001391 NM_001001392 NM_001202555 NM_001202556 NM_001202557	98190	+	TSC_hg19_v1_chr11_+_35160717 AK297776 D28447 X66733 X55150 BC004372 BC052287 AY101193 BC067348 AY101192 M24915 X56794 U40373 S66400	98524	+	TSC_hg19_v1_chr11_+_35160821 M59040	98608	+	BX648910|PDHX|8050|pyruvate dehydrogenase complex, component X##U82328|PDHX|8050|pyruvate dehydrogenase complex, component X##BC010389|PDHX|8050|pyruvate dehydrogenase complex, component X##AK312463|PDHX|8050|pyruvate dehydrogenase complex, component X##AK301384|PDHX|8050|pyruvate dehydrogenase complex, component X##AF001437|PDHX|8050|pyruvate dehydrogenase complex, component X##Y13145|PDHX|8050|pyruvate dehydrogenase complex, component X##BC017594|APIP|51074|APAF1 interacting protein##BC009077|APIP|51074|APAF1 interacting protein##AK302225|APIP|51074|APAF1 interacting protein##AK225249|APIP|51074|APAF1 interacting protein##AF132963|APIP|51074|APAF1 interacting protein##BC008440|APIP|51074|APAF1 interacting protein##AK292648|APIP|51074|APAF1 interacting protein##NM_015957|APIP|51074|APAF1 interacting protein##NM_001135024|PDHX|8050|pyruvate dehydrogenase complex, component X##NM_001166158|PDHX|8050|pyruvate dehydrogenase complex, component X##NM_003477|PDHX|8050|pyruvate dehydrogenase complex, component X##AL832642|CD44|960|CD44 molecule (Indian blood group)##NM_000610|CD44|960|CD44 molecule (Indian blood group)##NM_001001389|CD44|960|CD44 molecule (Indian blood group)##NM_001001390|CD44|960|CD44 molecule (Indian blood group)##NM_001001391|CD44|960|CD44 molecule (Indian blood group)##NM_001001392|CD44|960|CD44 molecule (Indian blood group)##NM_001202555|CD44|960|CD44 molecule (Indian blood group)##NM_001202556|CD44|960|CD44 molecule (Indian blood group)##NM_001202557|CD44|960|CD44 molecule (Indian blood group)##AK297776|CD44|960|CD44 molecule (Indian blood group)##D28447|CD44|960|CD44 molecule (Indian blood group)##X66733|CD44|960|CD44 molecule (Indian blood group)##X55150|CD44|960|CD44 molecule (Indian blood group)##BC004372|CD44|960|CD44 molecule (Indian blood group)##BC052287|CD44|960|CD44 molecule (Indian blood group)##AY101193|CD44|960|CD44 molecule (Indian blood group)##BC067348|CD44|960|CD44 molecule (Indian blood group)##AY101192|CD44|960|CD44 molecule (Indian blood group)##M24915|CD44|960|CD44 molecule (Indian blood group)##X56794|CD44|960|CD44 molecule (Indian blood group)##U40373|CD44|960|CD44 molecule (Indian blood group)##S66400|CD44|960|CD44 molecule (Indian blood group)##M59040|CD44|960|CD44 molecule (Indian blood group)	0.0	0.0	
chr12	93381212	93381314	reg1002276.p1	4.893	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-58165	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-58220	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	-58325	-	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	390629	+	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	454423	-	TSC_hg19_v1_chr12_-_93835718 D83004	454455	-	NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.0	0.364155	CTCF.p2:-9:0.364
chr16	13175799	13175952	reg1009725.p2	4.893	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-180407	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-278156	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-278224	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	838156	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	989211	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	1104643	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.0	0.0	
chr20	52353960	52354072	reg1008190.p2	4.893	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-143217	-	AF041259 NM_006526	-154381	-	AK302570 NM_001193421	-552195	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	333046	-	AK315220 NM_003657	333287	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	436504	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.234464	0.0	
chr6	57386244	57386377	reg1010432.p1	4.893	+	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-203895	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-299239	-	AB034244 AK313796 NM_183227	-300080	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	901369	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	5609691	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	6643554	-	BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AB034244|RAB23|51715|RAB23, member RAS oncogene family##AK313796|RAB23|51715|RAB23, member RAS oncogene family##NM_183227|RAB23|51715|RAB23, member RAS oncogene family##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	0.990772	0.0	denovo_WM_7:10:0.543	denovo_WM_7:11:0.351
chrX	56830059	56830176	reg1000131.p2	4.893	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-74426	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-240066	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-571207	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	191854	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	317811	-	BC071694 NM_019003	333940	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.38078	CTCF.p2:48:0.381
chr16	85938309	85938465	reg1007494.p1	4.892	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-5601	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-105052	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-105082	+	TSC_hg19_v1_chr16_-_86542463 AK091834	604077	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	605769	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	605853	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.993797	0.0	
chr17	80509837	80509924	reg1010261.p2	4.892	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-32290	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-93238	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-93317	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	96403	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	146654	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	164726	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	0.0	0.409306	CTCF.p2:12:0.409
chr18	32643845	32643954	reg1002119.p1	4.892	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	-22443	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-85599	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-86940	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	177147	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	226273	-	TSC_hg19_v1_chr18_+_32870279 AK023456 AF159567 AK094216	226405	+	NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK023456|ZNF271|10778|zinc finger protein 271##AF159567|ZNF271|10778|zinc finger protein 271##AK094216|ZNF271|10778|zinc finger protein 271	2.013141	0.0	denovo_WM_7:73:0.367	denovo_WM_7:74:0.276
chr18	76916874	76917007	reg1001413.p1	4.892	+	TSC_hg19_v1_chr18_+_76856487 CU690988	-60441	+	TSC_hg19_v1_chr18_+_76829420 BC053561	-87491	+	BC036473 TSC_hg19_v1_chr18_+_76829395 AK308291 BC022535 BC125219 BC125220 NM_198531 AK093704 AX748269 AK295981	-87541	+	TSC_hg19_v1_chr18_+_77155750 NM_006162 NM_172388 NM_172390 U80917	238873	+	TSC_hg19_v1_chr18_+_77155929 AK292641	238993	+	U80919 TSC_hg19_v1_chr18_+_77155946	239006	+	BC053561|ATP9B|374868|ATPase, class II, type 9B##BC036473|ATP9B|374868|ATPase, class II, type 9B##AK308291|ATP9B|374868|ATPase, class II, type 9B##BC022535|ATP9B|374868|ATPase, class II, type 9B##BC125219|ATP9B|374868|ATPase, class II, type 9B##BC125220|ATP9B|374868|ATPase, class II, type 9B##NM_198531|ATP9B|374868|ATPase, class II, type 9B##AK093704|ATP9B|374868|ATPase, class II, type 9B##AK295981|ATP9B|374868|ATPase, class II, type 9B##NM_006162|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172388|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172390|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80917|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK292641|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80919|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.0	0.0	
chr2	224822086	224822238	reg1012092.p2	4.892	+	TSC_hg19_v1_chr2_+_224822174 NM_022915 AK022763 BC012058 AK024052 CR457293 CU680184	-9	+	TSC_hg19_v1_chr2_-_224810053 BC065934 NM_020830 AJ310568	-12097	-	TSC_hg19_v1_chr2_-_224810031 BC021065	-12130	-	M17783 CU677383 CU692108 DQ893191 DQ893684 DQ893685 DQ896516 DQ896862 DQ896863 TSC_hg19_v1_chr2_-_224866627 AB590658	44466	-	AK295564 NM_001136530	81178	-	TSC_hg19_v1_chr2_-_224904004 BC015663 AK225823 AK297588 AK312499 NM_001136528 NM_006216	82008	-	NM_022915|MRPL44|65080|mitochondrial ribosomal protein L44##AK022763|MRPL44|65080|mitochondrial ribosomal protein L44##BC012058|MRPL44|65080|mitochondrial ribosomal protein L44##AK024052|MRPL44|65080|mitochondrial ribosomal protein L44##CR457293|MRPL44|65080|mitochondrial ribosomal protein L44##BC065934|WDFY1|57590|WD repeat and FYVE domain containing 1##NM_020830|WDFY1|57590|WD repeat and FYVE domain containing 1##AJ310568|WDFY1|57590|WD repeat and FYVE domain containing 1##M17783|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##DQ893191|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##DQ893684|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##DQ893685|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##DQ896516|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##DQ896862|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##DQ896863|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##AK295564|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##NM_001136530|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##BC015663|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##AK225823|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##AK297588|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##AK312499|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##NM_001136528|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2##NM_006216|SERPINE2|5270|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2	0.0	0.0	
chr3	121151183	121151347	reg1009688.p1	4.892	+	TSC_hg19_v1_chr3_+_120627071 NM_014980 AK296544 BC022029 AB023223	-524200	+	NM_005513 TSC_hg19_v1_chr3_+_120461590 AK223401 BC005917 S67859	-689683	+	BC020832 TSC_hg19_v1_chr3_-_120461364 AK293085 BX647664 BX647559 BX647593 NM_173825	-689888	-	AB209867 TSC_hg19_v1_chr3_-_121264836 CR936627 AY338826 NM_199420	113553	-	NM_001012659	135512	+	NM_016298 AK314400 AF204674	160951	+	NM_014980|STXBP5L|9515|syntaxin binding protein 5-like##AK296544|STXBP5L|9515|syntaxin binding protein 5-like##BC022029|STXBP5L|9515|syntaxin binding protein 5-like##AB023223|STXBP5L|9515|syntaxin binding protein 5-like##NM_005513|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##AK223401|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##BC005917|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##S67859|GTF2E1|2960|general transcription factor IIE, polypeptide 1, alpha 56kDa##BC020832|RABL3|285282|RAB, member of RAS oncogene family-like 3##AK293085|RABL3|285282|RAB, member of RAS oncogene family-like 3##BX647664|RABL3|285282|RAB, member of RAS oncogene family-like 3##BX647559|RABL3|285282|RAB, member of RAS oncogene family-like 3##BX647593|RABL3|285282|RAB, member of RAS oncogene family-like 3##NM_173825|RABL3|285282|RAB, member of RAS oncogene family-like 3##AB209867|POLQ|10721|polymerase (DNA directed), theta##CR936627|POLQ|10721|polymerase (DNA directed), theta##AY338826|POLQ|10721|polymerase (DNA directed), theta##NM_199420|POLQ|10721|polymerase (DNA directed), theta##NM_001012659|ARGFX|503582|arginine-fifty homeobox##NM_016298|FBXO40|51725|F-box protein 40##AK314400|FBXO40|51725|F-box protein 40##AF204674|FBXO40|51725|F-box protein 40	0.440106	0.0	denovo_WM_7:8:0.296
chr8	105778074	105778188	reg1007612.p2	4.892	+	TSC_hg19_v1_chr8_-_105601235 AK299374 NM_001135703 NM_013437	-176884	-	CU689274 DQ892323 DQ895525 BC032109 AK289752 AF166350 TSC_hg19_v1_chr8_-_105601191 CR749434 AF064841	-176956	-	CU689878 BC034395 D78011 NM_001385 TSC_hg19_v1_chr8_-_105479284	-298916	-	AF119334 BC109222 BC109223 NM_012082	553015	+	TSC_hg19_v1_chr8_+_107282433 NM_001198533 NM_018002 AK124441 BC040619	1504292	+	AK296561 NM_001198532	1682020	+	AK299374|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_001135703|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_013437|LRP12|29967|low density lipoprotein receptor-related protein 12##DQ892323|LRP12|29967|low density lipoprotein receptor-related protein 12##DQ895525|LRP12|29967|low density lipoprotein receptor-related protein 12##BC032109|LRP12|29967|low density lipoprotein receptor-related protein 12##AK289752|LRP12|29967|low density lipoprotein receptor-related protein 12##AF166350|LRP12|29967|low density lipoprotein receptor-related protein 12##CR749434|LRP12|29967|low density lipoprotein receptor-related protein 12##AF064841|LRP12|29967|low density lipoprotein receptor-related protein 12##BC034395|DPYS|1807|dihydropyrimidinase##D78011|DPYS|1807|dihydropyrimidinase##NM_001385|DPYS|1807|dihydropyrimidinase##AF119334|ZFPM2|23414|zinc finger protein, multitype 2##BC109222|ZFPM2|23414|zinc finger protein, multitype 2##BC109223|ZFPM2|23414|zinc finger protein, multitype 2##NM_012082|ZFPM2|23414|zinc finger protein, multitype 2##NM_001198533|OXR1|55074|oxidation resistance 1##NM_018002|OXR1|55074|oxidation resistance 1##AK124441|OXR1|55074|oxidation resistance 1##BC040619|OXR1|55074|oxidation resistance 1##AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1	0.996958	0.0	
chrX	118863999	118864097	reg1009588.p1	4.892	+	AY034177 AF403058 AF403059 AF403060 AF403061 AF403062 AY679521 NM_015129 NM_145799 NM_145800 NM_145802 TSC_hg19_v1_chrX_-_118827360 AK290977	-36697	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	-36869	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	-36916	-	TSC_hg19_v1_chrX_+_118892553 NM_001105576	28533	+	U57846 AK098280 BC001019 D79205 TSC_hg19_v1_chrX_-_118925592 BC070205 D28397 NM_001000	61536	-	TSC_hg19_v1_chrX_-_118986969 AF318576 AK093728 AX748280 BC121017 BC121018 AY013251 BC008494 NM_023010 NM_080632	122903	-	AY034177|SEPT6|23157|septin 6##AF403058|SEPT6|23157|septin 6##AF403059|SEPT6|23157|septin 6##AF403060|SEPT6|23157|septin 6##AF403061|SEPT6|23157|septin 6##AF403062|SEPT6|23157|septin 6##AY679521|SEPT6|23157|septin 6##NM_015129|SEPT6|23157|septin 6##NM_145799|SEPT6|23157|septin 6##NM_145800|SEPT6|23157|septin 6##NM_145802|SEPT6|23157|septin 6##AK290977|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##NM_001105576|ANKRD58|347454|ankyrin repeat domain 58##U57846|RPL39|6170|ribosomal protein L39##BC001019|RPL39|6170|ribosomal protein L39##D79205|RPL39|6170|ribosomal protein L39##BC070205|RPL39|6170|ribosomal protein L39##D28397|RPL39|6170|ribosomal protein L39##NM_001000|RPL39|6170|ribosomal protein L39##AF318576|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AK093728|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121017|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121018|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AY013251|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC008494|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_023010|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_080632|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)	0.112097	0.814887	CTCF.p2:23:0.815
chr1	233755974	233756118	reg1010002.p1	4.891	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	-6127	+	NM_002245 U33632 U90065 AK314016 BC018051 U76996 TSC_hg19_v1_chr1_+_233749898	-6223	+	AJ311797 AJ311798 NM_032435 BC136648 BC136649	-292463	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	284566	+	TSC_hg19_v1_chr1_+_234350005 BC037878	593960	+	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	753326	+	DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##NM_002245|KCNK1|3775|potassium channel, subfamily K, member 1##U33632|KCNK1|3775|potassium channel, subfamily K, member 1##U90065|KCNK1|3775|potassium channel, subfamily K, member 1##AK314016|KCNK1|3775|potassium channel, subfamily K, member 1##BC018051|KCNK1|3775|potassium channel, subfamily K, member 1##U76996|KCNK1|3775|potassium channel, subfamily K, member 1##AJ311797|KIAA1804|84451|mixed lineage kinase 4##AJ311798|KIAA1804|84451|mixed lineage kinase 4##NM_032435|KIAA1804|84451|mixed lineage kinase 4##BC136648|KIAA1804|84451|mixed lineage kinase 4##BC136649|KIAA1804|84451|mixed lineage kinase 4##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3##BC037878|SLC35F3|148641|solute carrier family 35, member F3##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31	0.0	0.0	
chr18	42258805	42258934	reg1001695.p1	4.891	+	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	-1401440	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	-1563300	-	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-2723636	+	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	1245	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	1999	+	NM_001242692 AK292422	534083	+	EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2	0.0	0.0	
chr12	113468839	113468991	reg1012307.p2	4.890	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	-52575	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-92575	+	TSC_hg19_v1_chr12_+_113376245 AK000608 NM_006187 BC113746 BC012015 AK292949	-92665	+	NM_004416 BC048216	26775	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	104497	-	AF086713 AB208935 AK294350 NM_001193520 NM_004658	105116	-	NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AK000608|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##NM_006187|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##BC113746|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##BC012015|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AK292949|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	0.0	0.98224	CTCF.p2:23:0.982
chr1	94798236	94798353	reg1010572.p1	4.890	+	TSC_hg19_v1_chr1_-_94703252 BC067839 NM_004815	-95015	-	TSC_hg19_v1_chr1_-_94703141 BC093767 U90920 AK307733 BC022483	-95230	-	AF001945 U88667 AK295818 AF000148 AB210040 DQ426859 NM_000350	-211603	-	TSC_hg19_v1_chr1_+_94883966 NM_001122674 NM_002858	85654	+	AK296791 TSC_hg19_v1_chr1_+_94883971 AK302714 AK308159 BC068509 BC009712 X58528 AB529219 CU679455 BT006644 M81182	85707	+	AF497569 AF497570 BT019808 CR541792 AB528376 AF487337 DQ892755 M16553 TSC_hg19_v1_chr1_-_95007316 M27436 J02931 AK312638 AK310918 AY940729 BC011029 NM_001178096 NM_001993	208981	-	BC067839|ARHGAP29|9411|Rho GTPase activating protein 29##NM_004815|ARHGAP29|9411|Rho GTPase activating protein 29##BC093767|ARHGAP29|9411|Rho GTPase activating protein 29##U90920|ARHGAP29|9411|Rho GTPase activating protein 29##AK307733|ARHGAP29|9411|Rho GTPase activating protein 29##BC022483|ARHGAP29|9411|Rho GTPase activating protein 29##AF001945|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##U88667|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##AK295818|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##AF000148|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##AB210040|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##DQ426859|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##NM_000350|ABCA4|24|ATP-binding cassette, sub-family A (ABC1), member 4##NM_001122674|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##NM_002858|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##AK296791|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##AK302714|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##AK308159|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##BC068509|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##BC009712|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##X58528|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##BT006644|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##M81182|ABCD3|5825|ATP-binding cassette, sub-family D (ALD), member 3##AF497569|F3|2152|coagulation factor III (thromboplastin, tissue factor)##AF497570|F3|2152|coagulation factor III (thromboplastin, tissue factor)##BT019808|F3|2152|coagulation factor III (thromboplastin, tissue factor)##CR541792|F3|2152|coagulation factor III (thromboplastin, tissue factor)##AF487337|F3|2152|coagulation factor III (thromboplastin, tissue factor)##DQ892755|F3|2152|coagulation factor III (thromboplastin, tissue factor)##M16553|F3|2152|coagulation factor III (thromboplastin, tissue factor)##M27436|F3|2152|coagulation factor III (thromboplastin, tissue factor)##J02931|F3|2152|coagulation factor III (thromboplastin, tissue factor)##AK312638|F3|2152|coagulation factor III (thromboplastin, tissue factor)##AK310918|F3|2152|coagulation factor III (thromboplastin, tissue factor)##AY940729|F3|2152|coagulation factor III (thromboplastin, tissue factor)##BC011029|F3|2152|coagulation factor III (thromboplastin, tissue factor)##NM_001178096|F3|2152|coagulation factor III (thromboplastin, tissue factor)##NM_001993|F3|2152|coagulation factor III (thromboplastin, tissue factor)	0.999242	0.0	denovo_WM_7:-74:0.295	denovo_WM_7:-75:0.295	denovo_WM_7:-76:0.295
chr6	22373378	22373500	reg1010653.p2	4.890	+	X54394 X54393 GQ305133 M58594 NM_001163558	-70392	-	BC015850 NM_000948	-75710	-	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-706780	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	196286	+	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	1752991	+	AF181722 NM_181337	1983691	+	X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1	0.0	0.0	
chr9	108424520	108424640	reg1008846.p1	4.890	+	TSC_hg19_v1_chr9_+_108320420 NM_001079802 NM_001198963 NM_006731 AK300840 AK304460 BC058842 AB008226 AB609007	-104157	+	AK309817 TSC_hg19_v1_chr9_+_108210342 NM_001145313 NM_031919 NM_207647 AF088031 AK299350 AK296433 AK299491 AF316830	-214317	+	TSC_hg19_v1_chr9_+_108006993 AJ420812 BC049203 AB528737	-417513	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	177	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	32273	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	32338	+	NM_001079802|FKTN|2218|fukutin##NM_001198963|FKTN|2218|fukutin##NM_006731|FKTN|2218|fukutin##AK300840|FKTN|2218|fukutin##AK304460|FKTN|2218|fukutin##BC058842|FKTN|2218|fukutin##AB008226|FKTN|2218|fukutin##AK309817|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_001145313|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_031919|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_207647|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AF088031|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK299350|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK296433|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK299491|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AF316830|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AJ420812|SLC44A1|23446|solute carrier family 44, member 1##BC049203|SLC44A1|23446|solute carrier family 44, member 1##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B	0.608519	0.0	denovo_WM_7:39:0.609
chr9	82239410	82239590	reg1001748.p2	4.890	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-51815	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-51976	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-52614	+	BC010100 NM_005077	2064095	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2064927	-	NM_001145197 AK125847 AK308327	2303871	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	0.0	0.0	
chr1	28877148	28877328	reg1010113.p2	4.889	+	TSC_hg19_v1_chr1_+_28844766 BC069198	-32456	+	X12654 TSC_hg19_v1_chr1_+_28844754 NM_001048194 NM_001048195 NM_001269	-32535	+	TSC_hg19_v1_chr1_+_28832555 AJ006834 AJ006835 X06130 BC012122 BC065008 BC007300 BC036903 BC006790 BC017334	-44656	+	TSC_hg19_v1_chr1_+_28879528 NM_017846 AK000510 AK309481 AK023555 AK300162 BC000680 BC039879 BC035855 AB528915	2332	+	BC064589 BC068048 AK092096 BC045792 TSC_hg19_v1_chr1_-_28908385	31132	-	BC033175 NM_152304 AK312176	41504	+	BC069198|RCC1|1104|regulator of chromosome condensation 1##X12654|RCC1|1104|regulator of chromosome condensation 1##NM_001048194|RCC1|1104|regulator of chromosome condensation 1##NM_001048195|RCC1|1104|regulator of chromosome condensation 1##NM_001269|RCC1|1104|regulator of chromosome condensation 1##AJ006834|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##AJ006835|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC012122|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC065008|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC006790|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC017334|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##NM_017846|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK000510|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK309481|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK023555|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK300162|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC000680|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC039879|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC035855|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC064589|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC068048|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##AK092096|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC045792|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC033175|RAB42|115273|RAB42, member RAS oncogene family##NM_152304|RAB42|115273|RAB42, member RAS oncogene family##AK312176|RAB42|115273|RAB42, member RAS oncogene family	4.208757	0.0	denovo_WM_7:-5:0.398	denovo_WM_7:-17:0.463	denovo_WM_7:-21:0.356	denovo_WM_7:-32:0.471	denovo_WM_7:-36:0.424	denovo_WM_7:-89:0.381	denovo_WM_7:-90:0.286	denovo_WM_7:-106:0.274	denovo_WM_7:-107:0.360
chr2	208848205	208848385	reg1009264.p1	4.889	+	U43318 AB043702 NM_003468	-214199	-	TSC_hg19_v1_chr2_+_208576466 BC067253	-271795	+	TSC_hg19_v1_chr2_+_208576365 BC047293	-271900	+	TSC_hg19_v1_chr2_-_208890252 BX648983 NM_001080475	41969	-	HQ258094 U66583 BC117338 BC117340 NM_006891	140901	-	AB590655 U66582 BC074954 BC074955 NM_020989	146185	-	U43318|FZD5|7855|frizzled family receptor 5##AB043702|FZD5|7855|frizzled family receptor 5##NM_003468|FZD5|7855|frizzled family receptor 5##BC067253|CCNYL1|151195|cyclin Y-like 1##BC047293|CCNYL1|151195|cyclin Y-like 1##BX648983|PLEKHM3|389072|pleckstrin homology domain containing, family M, member 3##NM_001080475|PLEKHM3|389072|pleckstrin homology domain containing, family M, member 3##HQ258094|CRYGD|1421|crystallin, gamma D##U66583|CRYGD|1421|crystallin, gamma D##BC117338|CRYGD|1421|crystallin, gamma D##BC117340|CRYGD|1421|crystallin, gamma D##NM_006891|CRYGD|1421|crystallin, gamma D##U66582|CRYGC|1420|crystallin, gamma C##BC074954|CRYGC|1420|crystallin, gamma C##BC074955|CRYGC|1420|crystallin, gamma C##NM_020989|CRYGC|1420|crystallin, gamma C	0.991713	0.0	denovo_WM_7:24:0.521
chr8	124398207	124398334	reg1011043.p1	4.889	+	TSC_hg19_v1_chr8_-_124286697 NM_001017926 NM_001204180 NM_007222	-111579	-	AF195766 TSC_hg19_v1_chr8_-_124286514 AK094451 BC040481	-111747	-	TSC_hg19_v1_chr8_-_124253618 AK222660 GQ129275 GQ129276 BC067796 AK027731 NM_032847	-144660	-	AL833653 AY598335 BC113656 BC143716 TSC_hg19_v1_chr8_-_124408640 BC007123	10279	-	TSC_hg19_v1_chr8_-_124408665 BC112942	10395	-	TSC_hg19_v1_chr8_-_124408671 AK097133	10407	-	NM_001017926|ZHX1|11244|zinc fingers and homeoboxes 1##NM_001204180|ZHX1-C8ORF76|100533106|ZHX1-C8ORF76 readthrough##NM_007222|ZHX1|11244|zinc fingers and homeoboxes 1##AF195766|ZHX1|11244|zinc fingers and homeoboxes 1##AK094451|ZHX1|11244|zinc fingers and homeoboxes 1##BC040481|ZHX1|11244|zinc fingers and homeoboxes 1##AK222660|C8orf76|84933|chromosome 8 open reading frame 76##GQ129275|C8orf76|84933|chromosome 8 open reading frame 76##GQ129276|C8orf76|84933|chromosome 8 open reading frame 76##BC067796|C8orf76|84933|chromosome 8 open reading frame 76##AK027731|C8orf76|84933|chromosome 8 open reading frame 76##NM_032847|C8orf76|84933|chromosome 8 open reading frame 76##AL833653|ATAD2|29028|ATPase family, AAA domain containing 2##AY598335|ATAD2|29028|ATPase family, AAA domain containing 2##BC113656|ATAD2|29028|ATPase family, AAA domain containing 2##BC143716|ATAD2|29028|ATPase family, AAA domain containing 2##BC007123|ATAD2|29028|ATPase family, AAA domain containing 2##BC112942|ATAD2|29028|ATPase family, AAA domain containing 2##AK097133|ATAD2|29028|ATPase family, AAA domain containing 2	0.990529	0.0	denovo_WM_7:-2:0.835
chr15	44929001	44929156	reg1007598.p1	4.888	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-99696	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-99736	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-99766	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	26766	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	26802	-	BC036924 NM_001145112	40007	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	2.79681	0.0	denovo_WM_7:53:0.517	denovo_WM_7:54:0.311	denovo_WM_7:68:0.207	denovo_WM_7:69:0.308	denovo_WM_7:70:0.460	denovo_WM_7:86:0.485
chr17	16878853	16878969	reg1002445.p1	4.888	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-3507	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-285307	+	AK131401 NM_020787	-321750	-	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	67053	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	230702	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	230746	-	AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK131401|ZNF624|57547|zinc finger protein 624##NM_020787|ZNF624|57547|zinc finger protein 624##NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6	0.0	0.0	
chr17	70412309	70412489	reg1010211.p1	4.888	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-295159	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-295229	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-295240	+	AK000477 TSC_hg19_v1_chr17_-_70588944	176544	-	AF331643 TSC_hg19_v1_chr17_-_71088816	676417	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	676424	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.971717	0.0	denovo_WM_7:-40:0.742
chr22	43149033	43149115	reg1001969.p1	4.888	+	TSC_hg19_v1_chr22_-_43117270 AK312927	-31797	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	-32219	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	-59167	-	TSC_hg19_v1_chr22_-_43253228 CU012940 CU013228 CU674999 DQ893007 DQ896253 CR456382 BC005122	104137	-	TSC_hg19_v1_chr22_-_43253280 AF111847 AK307967 AK315720 AL159143 AK300531 AK297635	104196	-	TSC_hg19_v1_chr22_-_43253305 NM_001142293 NM_014570	104281	-	AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##CU012940|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CU013228|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ893007|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##DQ896253|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##CR456382|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##BC005122|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AF111847|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK307967|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK315720|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AL159143|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK300531|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##AK297635|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_001142293|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3##NM_014570|ARFGAP3|26286|ADP-ribosylation factor GTPase activating protein 3	0.0	0.0	
chr5	180532899	180532977	reg1003194.p2	4.888	+	AK298113 TSC_hg19_v1_chr5_+_180467271 BC062459	-65623	+	NM_152547 TSC_hg19_v1_chr5_+_180467233 AK057097 AY358358	-65701	+	NM_197975 AK025267 AY358385 BC100800 BC100801 BC100802	-117037	+	NM_206880	49004	+	AF396655 NM_203297	94991	-	AF396652 AF396653 NM_203294 NM_203295 NM_203296	98401	-	AK298113|BTNL9|153579|butyrophilin-like 9##BC062459|BTNL9|153579|butyrophilin-like 9##NM_152547|BTNL9|153579|butyrophilin-like 9##AK057097|BTNL9|153579|butyrophilin-like 9##AY358358|BTNL9|153579|butyrophilin-like 9##NM_197975|BTNL3|10917|butyrophilin-like 3##AK025267|BTNL3|10917|butyrophilin-like 3##AY358385|BTNL3|10917|butyrophilin-like 3##BC100800|BTNL3|10917|butyrophilin-like 3##BC100801|BTNL3|10917|butyrophilin-like 3##BC100802|BTNL3|10917|butyrophilin-like 3##NM_206880|OR2V2|285659|olfactory receptor, family 2, subfamily V, member 2##AF396655|TRIM7|81786|tripartite motif containing 7##NM_203297|TRIM7|81786|tripartite motif containing 7##AF396652|TRIM7|81786|tripartite motif containing 7##AF396653|TRIM7|81786|tripartite motif containing 7##NM_203294|TRIM7|81786|tripartite motif containing 7##NM_203295|TRIM7|81786|tripartite motif containing 7##NM_203296|TRIM7|81786|tripartite motif containing 7	0.99029	0.0	
chr8	37125445	37125534	reg1009665.p2	4.888	+	NM_001031836 AK302391 BC028701	-483619	+	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	-2032502	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-3667994	-	TSC_hg19_v1_chr8_-_37457377 AK025743	331879	-	TSC_hg19_v1_chr8_+_37553300 AK024361 NM_025069 BC032534	427828	+	TSC_hg19_v1_chr8_+_37594112 NM_001003791 NM_007175 AL442077	468617	+	NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK025743|LOC157860|157860|uncharacterized LOC157860##AK024361|ZNF703|80139|zinc finger protein 703##NM_025069|ZNF703|80139|zinc finger protein 703##BC032534|ZNF703|80139|zinc finger protein 703##NM_001003791|ERLIN2|11160|ER lipid raft associated 2##NM_007175|ERLIN2|11160|ER lipid raft associated 2##AL442077|ERLIN2|11160|ER lipid raft associated 2	0.0	0.0	
chr9	87671134	87671222	reg1007615.p2	4.888	+	U12140 TSC_hg19_v1_chr9_+_87285349	-385846	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-386426	+	TSC_hg19_v1_chr9_+_87284681 AF410899 AF410900 AF410901	-386482	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	685693	-	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	884896	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	885000	+	U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410899|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410900|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410901|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	0.0	0.0	
chr5	114938350	114938456	reg1002417.p2	4.887	+	BC109265 BC109266 NM_021649	-286	-	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	-57840	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	-58046	-	TSC_hg19_v1_chr5_-_114961697 AK074962	23289	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	23391	-	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	213960	-	BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7##D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I	0.0	0.0	
chr7	72532431	72532588	reg1009718.p1	4.887	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-107267	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-135635	+	TSC_hg19_v1_chr7_+_72395623 AK123814 AB289621	-136884	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	36522	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	190315	-	AK057366 AY081948 AY081949 NM_178125	209575	-	BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##AK123814|POM121|9883|POM121 membrane glycoprotein##AB289621|POM121|9883|POM121 membrane glycoprotein##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50	0.999686	0.0	
chr9	36153079	36153253	reg1011816.p2	4.887	+	TSC_hg19_v1_chr9_+_36136731 AK074488 BC017918 AK075091 AK298741 AK307243 CR749781 AY039756 NM_022343	-16434	+	TSC_hg19_v1_chr9_+_36036901 AK292653 NM_021111 AK315073 BC050306 BC032240 BC060806 BC137093 CU687432	-116219	+	HQ258184 BC104869 BC113651 NM_019897	-195044	-	AK313763 NM_005893 AF333334 BC019251 DQ890826 DQ893980 DQ893982 EU176505 Z46967	16280	+	NM_001076677 NM_001184760 NM_001184761 NM_001184762 NM_001833 NM_007096 TSC_hg19_v1_chr9_+_36190877	37701	+	TSC_hg19_v1_chr9_+_36190919 AK291078	37739	+	AK074488|GLIPR2|152007|GLI pathogenesis-related 2##BC017918|GLIPR2|152007|GLI pathogenesis-related 2##AK075091|GLIPR2|152007|GLI pathogenesis-related 2##AK298741|GLIPR2|152007|GLI pathogenesis-related 2##AK307243|GLIPR2|152007|GLI pathogenesis-related 2##CR749781|GLIPR2|152007|GLI pathogenesis-related 2##AY039756|GLIPR2|152007|GLI pathogenesis-related 2##NM_022343|GLIPR2|152007|GLI pathogenesis-related 2##AK292653|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##NM_021111|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##AK315073|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC050306|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC032240|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC060806|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##BC137093|RECK|8434|reversion-inducing-cysteine-rich protein with kazal motifs##HQ258184|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##BC104869|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##BC113651|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##NM_019897|OR2S2|56656|olfactory receptor, family 2, subfamily S, member 2##AK313763|CCIN|881|calicin##NM_005893|CCIN|881|calicin##AF333334|CCIN|881|calicin##BC019251|CCIN|881|calicin##DQ890826|CCIN|881|calicin##DQ893980|CCIN|881|calicin##DQ893982|CCIN|881|calicin##EU176505|CCIN|881|calicin##Z46967|CCIN|881|calicin##NM_001076677|CLTA|1211|clathrin, light chain A##NM_001184760|CLTA|1211|clathrin, light chain A##NM_001184761|CLTA|1211|clathrin, light chain A##NM_001184762|CLTA|1211|clathrin, light chain A##NM_001833|CLTA|1211|clathrin, light chain A##NM_007096|CLTA|1211|clathrin, light chain A##AK291078|CLTA|1211|clathrin, light chain A	0.991521	0.0	
chr10	104471502	104471655	reg1009255.p1	4.886	+	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	-67294	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-207759	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-207859	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	2519	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	2767	+	TSC_hg19_v1_chr10_+_104503704 AK300871	32092	+	NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2##AK300871|C10orf26|54838|chromosome 10 open reading frame 26	1.840136	0.0	denovo_WM_7:-53:0.596	denovo_WM_7:74:0.782
chr11	3510562	3510742	reg1008360.p1	4.886	+	BC121028 BC121029 AF003540 TSC_hg19_v1_chr11_-_3400362 AK308209 AL833722 AK290099 AK308068 AK131296 AK095720 AK293679 AK308024 NM_001130519 NM_001130520 NM_001242841 NM_001242842 NM_001242843 NM_007152	-110273	-	AK293940 NM_001039165	-257037	-	AB529240 AY255583 NM_001164377	-270610	-	NM_053017 NM_001079536 Y16835	152862	-	BC017828 BC069102 NM_004314 S74683 BC111729	155718	+	AB528800 AJ278118 AJ295237 BC136250 BC143303 AF199235 NM_020402	181926	-	BC121028|ZNF195|7748|zinc finger protein 195##BC121029|ZNF195|7748|zinc finger protein 195##AF003540|ZNF195|7748|zinc finger protein 195##AK308209|ZNF195|7748|zinc finger protein 195##AL833722|ZNF195|7748|zinc finger protein 195##AK290099|ZNF195|7748|zinc finger protein 195##AK308068|ZNF195|7748|zinc finger protein 195##AK131296|ZNF195|7748|zinc finger protein 195##AK095720|ZNF195|7748|zinc finger protein 195##AK293679|ZNF195|7748|zinc finger protein 195##AK308024|ZNF195|7748|zinc finger protein 195##NM_001130519|ZNF195|7748|zinc finger protein 195##NM_001130520|ZNF195|7748|zinc finger protein 195##NM_001242841|ZNF195|7748|zinc finger protein 195##NM_001242842|ZNF195|7748|zinc finger protein 195##NM_001242843|ZNF195|7748|zinc finger protein 195##NM_007152|ZNF195|7748|zinc finger protein 195##AK293940|MRGPRE|116534|MAS-related GPR, member E##NM_001039165|MRGPRE|116534|MAS-related GPR, member E##AY255583|MRGPRG|386746|MAS-related GPR, member G##NM_001164377|MRGPRG|386746|MAS-related GPR, member G##NM_053017|ART5|116969|ADP-ribosyltransferase 5##NM_001079536|ART5|116969|ADP-ribosyltransferase 5##Y16835|ART5|116969|ADP-ribosyltransferase 5##BC017828|ART1|417|ADP-ribosyltransferase 1##BC069102|ART1|417|ADP-ribosyltransferase 1##NM_004314|ART1|417|ADP-ribosyltransferase 1##S74683|ART1|417|ADP-ribosyltransferase 1##BC111729|ART1|417|ADP-ribosyltransferase 1##AJ278118|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AJ295237|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC136250|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC143303|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AF199235|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##NM_020402|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10	1.820534	0.0	denovo_WM_7:-66:0.734	denovo_WM_7:93:0.697
chr15	34619789	34619928	reg1002849.p2	4.886	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-8880	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-102618	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-117557	-	AF105366 AF531258 NM_001042497 NM_133647	9186	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	10105	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	10399	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.997164	0.0	denovo_WM_7:7:0.884
chr17	57909162	57909342	reg1007597.p1	4.886	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-124179	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-124217	+	BC009758 TSC_hg19_v1_chr17_+_57785014 AK024969	-124236	+	TSC_hg19_v1_chr17_+_57915291 AK310806	6054	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	60939	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	61210	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##BC009758|VMP1|81671|vacuole membrane protein 1##AK024969|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	0.0	0.0	
chr19	6198926	6199084	reg1012249.p1	4.886	+	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	-63252	+	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	-88393	-	TSC_hg19_v1_chr19_-_6110512 AK291196 BC071571 X76091	-88482	-	TSC_hg19_v1_chr19_-_6199558 AK056073	542	-	AB463904 TSC_hg19_v1_chr19_-_6279803	80798	-	TSC_hg19_v1_chr19_-_6279967 D14539 NM_005934	80960	-	AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK291196|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC071571|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##X76091|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##D14539|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##NM_005934|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	0.985234	0.0	denovo_WM_7:-29:0.293	denovo_WM_7:-30:0.293	denovo_WM_7:-31:0.293
chr3	16293910	16294090	reg1011868.p1	4.886	+	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	-77806	+	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	-392988	-	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	-454318	-	AK311618 BC010181 AK092040 TSC_hg19_v1_chr3_-_16306451 AK022970 NM_001047434 NM_206831	12389	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	12708	+	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	261018	-	AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AK311618|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##BC010181|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK092040|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##AK022970|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_001047434|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_206831|DPH3|285381|DPH3, KTI11 homolog (S. cerevisiae)##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1	0.986734	0.0	denovo_WM_7:21:0.968
chr5	123370789	123370943	reg1011641.p1	4.886	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-522984	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-611722	-	NM_001136239 AK297992 AF272898 AF272899	-946022	+	BC131507 AB033107 BC151226 NM_020747	709922	-	NM_001146319 AK316288 AK300154	2324948	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	2387977	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr2	136882810	136882924	reg1011615.p1	4.885	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-7191	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-9069	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-139651	-	TSC_hg19_v1_chr2_+_137523114 AK299929	640249	+	NM_001080427	865594	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1839067	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	1.297901	0.0	denovo_WM_7:-2:0.951	denovo_WM_7:-18:0.253
chrX	118889218	118889349	reg1008716.p1	4.885	+	AY034177 AF403058 AF403059 AF403060 AF403061 AF403062 AY679521 NM_015129 NM_145799 NM_145800 NM_145802 TSC_hg19_v1_chrX_-_118827360 AK290977	-61932	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	-62104	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	-62151	-	TSC_hg19_v1_chrX_+_118892553 NM_001105576	3298	+	U57846 AK098280 BC001019 D79205 TSC_hg19_v1_chrX_-_118925592 BC070205 D28397 NM_001000	36301	-	TSC_hg19_v1_chrX_-_118986969 AF318576 AK093728 AX748280 BC121017 BC121018 AY013251 BC008494 NM_023010 NM_080632	97668	-	AY034177|SEPT6|23157|septin 6##AF403058|SEPT6|23157|septin 6##AF403059|SEPT6|23157|septin 6##AF403060|SEPT6|23157|septin 6##AF403061|SEPT6|23157|septin 6##AF403062|SEPT6|23157|septin 6##AY679521|SEPT6|23157|septin 6##NM_015129|SEPT6|23157|septin 6##NM_145799|SEPT6|23157|septin 6##NM_145800|SEPT6|23157|septin 6##NM_145802|SEPT6|23157|septin 6##AK290977|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##NM_001105576|ANKRD58|347454|ankyrin repeat domain 58##U57846|RPL39|6170|ribosomal protein L39##BC001019|RPL39|6170|ribosomal protein L39##D79205|RPL39|6170|ribosomal protein L39##BC070205|RPL39|6170|ribosomal protein L39##D28397|RPL39|6170|ribosomal protein L39##NM_001000|RPL39|6170|ribosomal protein L39##AF318576|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AK093728|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121017|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC121018|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##AY013251|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##BC008494|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_023010|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)##NM_080632|UPF3B|65109|UPF3 regulator of nonsense transcripts homolog B (yeast)	0.992182	0.0	
chr12	23984865	23984988	reg1012323.p2	4.884	+	NM_178010 AK098610 AK223536	-247400	-	TSC_hg19_v1_chr12_+_22778130 CU688188 BC006111 AL137750 AK074425	-1206779	+	AF207600 TSC_hg19_v1_chr12_+_22778077 BC066907 NM_001039481 NM_018638	-1206883	+	AK074317 TSC_hg19_v1_chr12_-_24102605 BC065532 AB081589 NM_006940	117676	-	TSC_hg19_v1_chr12_-_24103855 AK299607 AK096569	118928	-	BC014929 TSC_hg19_v1_chr12_-_24103967 AK303970	119035	-	NM_178010|SOX5|6660|SRY (sex determining region Y)-box 5##AK098610|SOX5|6660|SRY (sex determining region Y)-box 5##AK223536|SOX5|6660|SRY (sex determining region Y)-box 5##BC006111|ETNK1|55500|ethanolamine kinase 1##AL137750|ETNK1|55500|ethanolamine kinase 1##AK074425|ETNK1|55500|ethanolamine kinase 1##AF207600|ETNK1|55500|ethanolamine kinase 1##BC066907|ETNK1|55500|ethanolamine kinase 1##NM_001039481|ETNK1|55500|ethanolamine kinase 1##NM_018638|ETNK1|55500|ethanolamine kinase 1##AK074317|SOX5|6660|SRY (sex determining region Y)-box 5##BC065532|SOX5|6660|SRY (sex determining region Y)-box 5##AB081589|SOX5|6660|SRY (sex determining region Y)-box 5##NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5##AK299607|SOX5|6660|SRY (sex determining region Y)-box 5##AK096569|SOX5|6660|SRY (sex determining region Y)-box 5##BC014929|SOX5|6660|SRY (sex determining region Y)-box 5##AK303970|SOX5|6660|SRY (sex determining region Y)-box 5	0.752469	0.0	denovo_WM_7:39:0.625
chr3	31046385	31046507	reg1008490.p2	4.884	+	AL832766 NM_207359	-110294	-	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-398043	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-398424	+	TSC_hg19_v1_chr3_+_31574119 AK311488	527684	+	TSC_hg19_v1_chr3_+_31574468 AK074587	528003	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	528036	+	AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	1.993961	0.0	
chr5	96812201	96812346	reg1011949.p1	4.884	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-293286	-	TSC_hg19_v1_chr5_-_96518945 AK002021	-293331	-	TSC_hg19_v1_chr5_-_96518934 AK225348 BC000953	-293365	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	1292768	+	BC054860 BC117134 NM_001270 AF006513	1449955	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	3058800	+	NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AK002021|RIOK2|55781|RIO kinase 2 (yeast)##AK225348|RIOK2|55781|RIO kinase 2 (yeast)##BC000953|RIOK2|55781|RIO kinase 2 (yeast)##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A	1.209102	0.0	
chr8	37640699	37640835	reg1005618.p2	4.884	+	TSC_hg19_v1_chr8_+_37620162 AK291135 CR533532 EU831636 EU831720	-20591	+	TSC_hg19_v1_chr8_+_37620124 AL136616	-20645	+	NM_007198 TSC_hg19_v1_chr8_+_37620111 BC012334 AK021923	-20658	+	TSC_hg19_v1_chr8_+_37654400 AK027296 NM_032777	13632	+	TSC_hg19_v1_chr8_+_37654406 AB040964 BC146774 AY090637	13658	+	TSC_hg19_v1_chr8_+_37654778 AF378755 AB385479 AY181242	14015	+	AK291135|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##CR533532|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831636|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##EU831720|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AL136616|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##NM_007198|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##BC012334|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK021923|PROSC|11212|proline synthetase co-transcribed homolog (bacterial)##AK027296|GPR124|25960|G protein-coupled receptor 124##NM_032777|GPR124|25960|G protein-coupled receptor 124##AB040964|GPR124|25960|G protein-coupled receptor 124##BC146774|GPR124|25960|G protein-coupled receptor 124##AY090637|GPR124|25960|G protein-coupled receptor 124##AF378755|GPR124|25960|G protein-coupled receptor 124##AY181242|GPR124|25960|G protein-coupled receptor 124	0.982587	0.0	denovo_WM_7:-83:0.396
chr9	126899281	126899401	reg1001953.p1	4.884	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-125270	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-125458	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-207030	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	120669	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	120904	+	TSC_hg19_v1_chr9_+_127020255 AB026289	120923	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.998149	0.0	denovo_WM_7:-37:0.951
chr10	17889879	17889978	reg1009546.p1	4.883	+	AK308132 AK308167 BC142642 J05550 NM_002438 X55635 BC146838 DQ663787	-38525	+	NM_001098844 BC157856	-95674	+	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	-203698	+	NM_001098844 BC157856	151293	+	AK308132 AK308167 J05550 NM_002438 X55635 BC146838 DQ663787	208465	+	NM_001145195 NM_152725 AK055061 BC035118 BC047635 AK295294 BC094700	350901	+	BC142642|MRC1|4360|mannose receptor, C type 1##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236##J05550|MRC1|4360|mannose receptor, C type 1##NM_002438|MRC1|4360|mannose receptor, C type 1##X55635|MRC1|4360|mannose receptor, C type 1##BC146838|MRC1|4360|mannose receptor, C type 1##DQ663787|MRC1|4360|mannose receptor, C type 1##NM_001145195|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##NM_152725|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK055061|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC035118|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC047635|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK295294|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC094700|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12	1.912237	0.51397	denovo_WM_7:3:0.825	denovo_WM_7:-14:0.901	CTCF.p2:-48:0.514
chr13	91999827	91999939	reg1011681.p1	4.882	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-3675014	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-5626444	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-7543383	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	51021	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	1879544	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	3131943	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	0.0	0.0	
chr19	8069037	8069125	reg1003640.p2	4.882	+	TSC_hg19_v1_chr19_-_8008615 AK289634 NM_006351	-60425	-	AF026030 BC000679 AB590328 CU689670 BC033628 TSC_hg19_v1_chr19_-_8008548 DQ891301 DQ894486 AK223062 AK309415 AF041254	-60529	-	TSC_hg19_v1_chr19_-_7991004 BC062702 AK098834 NM_206833	-78065	-	TSC_hg19_v1_chr19_-_8070526 U38175 BC003376 NM_001419	1444	-	AK292662 NM_001201359 NM_005624	48564	+	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	48866	+	AK289634|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##NM_006351|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF026030|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC033628|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ891301|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ894486|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK223062|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK309415|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF041254|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC062702|CTXN1|404217|cortexin 1##AK098834|CTXN1|404217|cortexin 1##NM_206833|CTXN1|404217|cortexin 1##U38175|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##BC003376|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##NM_001419|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25	0.0	0.0	
chr2	178141745	178141905	reg1011690.p1	4.882	+	AK314816 NM_006164	-11967	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	-12449	-	AK311688 NM_001145412 NM_001145413	-13254	-	TSC_hg19_v1_chr2_-_178257411 BC093095 AL833088 AK126517	115582	-	AK309714 TSC_hg19_v1_chr2_+_178257487 NM_003659	115604	+	TSC_hg19_v1_chr2_+_178257497 AK225439 AK314259 Y09443 BC141820 AY544121 AK296239 AK316240	115804	+	AK314816|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_006164|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##AL833088|LOC100130691|100130691|uncharacterized LOC100130691##AK126517|LOC100130691|100130691|uncharacterized LOC100130691##AK309714|AGPS|8540|alkylglycerone phosphate synthase##NM_003659|AGPS|8540|alkylglycerone phosphate synthase##AK314259|AGPS|8540|alkylglycerone phosphate synthase##Y09443|AGPS|8540|alkylglycerone phosphate synthase##BC141820|AGPS|8540|alkylglycerone phosphate synthase##AY544121|AGPS|8540|alkylglycerone phosphate synthase##AK296239|AGPS|8540|alkylglycerone phosphate synthase##AK316240|AGPS|8540|alkylglycerone phosphate synthase	0.991854	0.0	denovo_WM_7:-7:0.331	denovo_WM_7:-8:0.331	denovo_WM_7:-9:0.331
chr2	62238167	62238312	reg1010504.p1	4.882	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-105410	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-122453	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-122505	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	185027	+	BC047439 AK091902 AX747245 NM_198276	495300	-	AK292545 NM_001142615	662746	+	AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1	0.97096	0.0	denovo_WM_7:23:0.831
chr6	16491285	16491433	reg1007734.p2	4.882	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-252508	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-348049	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-361922	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	270338	-	NM_001190766	611129	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	790495	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.997674	0.0	
chr12	61412469	61412631	reg1007896.p1	4.881	+	BC030693 NM_004731 AK301725 AK310281 AK313345 AF058056	-1329411	+	BC007463 TSC_hg19_v1_chr12_+_59989852 AF049608	-1422633	+	AK292857 TSC_hg19_v1_chr12_-_59314301	-2098248	-	BC050347 NM_178539	1174033	-	NM_001252078 NM_001252079 NM_006313 AF153604 TSC_hg19_v1_chr12_+_62654184 AK292337 AK023703 BC063454 AK297759 BC020688 AF106069 BC125123 BC110908 AK295947 AB011101 AF013990	1241634	+	TSC_hg19_v1_chr12_+_62860601 NM_015026 BX537415 AL833066 AK123842 BC065289 BC111488 BC136621 BC144309 BC144324 AB028963 BC141817 BC142710 BC151241	1448029	+	BC030693|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##NM_004731|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##AK301725|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##AK310281|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##AK313345|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##AF058056|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##BC007463|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##AF049608|SLC16A7|9194|solute carrier family 16, member 7 (monocarboxylic acid transporter 2)##AK292857|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##BC050347|FAM19A2|338811|family with sequence similarity 19 (chemokine (C-C motif)-like), member A2##NM_178539|FAM19A2|338811|family with sequence similarity 19 (chemokine (C-C motif)-like), member A2##NM_001252078|USP15|9958|ubiquitin specific peptidase 15##NM_001252079|USP15|9958|ubiquitin specific peptidase 15##NM_006313|USP15|9958|ubiquitin specific peptidase 15##AF153604|USP15|9958|ubiquitin specific peptidase 15##AK292337|USP15|9958|ubiquitin specific peptidase 15##AK023703|USP15|9958|ubiquitin specific peptidase 15##BC063454|USP15|9958|ubiquitin specific peptidase 15##AK297759|USP15|9958|ubiquitin specific peptidase 15##BC020688|USP15|9958|ubiquitin specific peptidase 15##AF106069|USP15|9958|ubiquitin specific peptidase 15##BC125123|USP15|9958|ubiquitin specific peptidase 15##BC110908|USP15|9958|ubiquitin specific peptidase 15##AK295947|USP15|9958|ubiquitin specific peptidase 15##AB011101|USP15|9958|ubiquitin specific peptidase 15##AF013990|USP15|9958|ubiquitin specific peptidase 15##NM_015026|MON2|23041|MON2 homolog (S. cerevisiae)##BX537415|MON2|23041|MON2 homolog (S. cerevisiae)##AL833066|MON2|23041|MON2 homolog (S. cerevisiae)##AK123842|MON2|23041|MON2 homolog (S. cerevisiae)##BC065289|MON2|23041|MON2 homolog (S. cerevisiae)##BC136621|MON2|23041|MON2 homolog (S. cerevisiae)##BC144309|MON2|23041|MON2 homolog (S. cerevisiae)##BC144324|MON2|23041|MON2 homolog (S. cerevisiae)##AB028963|MON2|23041|MON2 homolog (S. cerevisiae)##BC141817|MON2|23041|MON2 homolog (S. cerevisiae)##BC142710|MON2|23041|MON2 homolog (S. cerevisiae)##BC151241|MON2|23041|MON2 homolog (S. cerevisiae)	0.0	0.0	
chr17	36780868	36781031	reg1008624.p1	4.881	+	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	-18753	-	BC029278 TSC_hg19_v1_chr17_-_36760969	-20011	-	TSC_hg19_v1_chr17_-_36729122 AK295027	-51827	-	TSC_hg19_v1_chr17_-_36831211 NM_001130677	50236	-	TSC_hg19_v1_chr17_+_36861421 BC064612	80650	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	80941	+	AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##AK295027|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_001130677|C17orf96|100170841|chromosome 17 open reading frame 96##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6	0.998734	0.0	denovo_WM_7:46:0.809
chr19	58428098	58428206	reg1004833.p1	4.881	+	TSC_hg19_v1_chr19_-_58427961 BC025783 AK293789 BC103757 NM_152475	-180	-	BC056684 AF086563 AK022663 TSC_hg19_v1_chr19_-_58400401 AK300483 NM_001144989	-27788	-	TSC_hg19_v1_chr19_+_58361226 AK027616 BC126237 BC126239 BC144112 BC144113 AB464407	-66840	+	AK056113 AY695825 NM_133460 AK304632 AK293723	18594	-	TSC_hg19_v1_chr19_-_58459075 BC001438 AK314094 NM_005773	30910	-	BC033933 NM_152474	57749	-	BC025783|ZNF417|147687|zinc finger protein 417##AK293789|ZNF417|147687|zinc finger protein 417##BC103757|ZNF417|147687|zinc finger protein 417##NM_152475|ZNF417|147687|zinc finger protein 417##BC056684|ZNF814|730051|zinc finger protein 814##AF086563|ZNF814|730051|zinc finger protein 814##AK022663|ZNF814|730051|zinc finger protein 814##AK300483|ZNF814|730051|zinc finger protein 814##NM_001144989|ZNF814|730051|zinc finger protein 814##AK027616|ZNF587|84914|zinc finger protein 587##BC126237|ZNF587|84914|zinc finger protein 587##BC126239|ZNF587|84914|zinc finger protein 587##BC144112|ZNF587|84914|zinc finger protein 587##BC144113|ZNF587|84914|zinc finger protein 587##AK056113|ZNF418|147686|zinc finger protein 418##AY695825|ZNF418|147686|zinc finger protein 418##NM_133460|ZNF418|147686|zinc finger protein 418##AK304632|ZNF418|147686|zinc finger protein 418##AK293723|ZNF418|147686|zinc finger protein 418##BC001438|ZNF256|10172|zinc finger protein 256##AK314094|ZNF256|10172|zinc finger protein 256##NM_005773|ZNF256|10172|zinc finger protein 256##BC033933|C19orf18|147685|chromosome 19 open reading frame 18##NM_152474|C19orf18|147685|chromosome 19 open reading frame 18	0.0	0.016648	
chr7	137710743	137710896	reg1009602.p1	4.881	+	TSC_hg19_v1_chr7_-_137686833 NM_001253775 NM_194071	-23967	-	AK131517 TSC_hg19_v1_chr7_-_137686812	-24007	-	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	-24025	-	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	50399	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	434173	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	434417	+	NM_001253775|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_194071|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK131517|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24	0.0	0.0	
chr10	49868025	49868151	reg1013317.p1	4.880	+	TSC_hg19_v1_chr10_-_49864302 AK055937	-3783	-	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	-55001	-	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	-258416	+	TSC_hg19_v1_chr10_+_49892917 BC034937	24802	+	AK127650 NM_020945	25427	+	NM_001006939 BC036722	254192	-	AK055937|ARHGAP22|58504|Rho GTPase activating protein 22##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##BC034937|WDFY4|57705|WDFY family member 4##AK127650|WDFY4|57705|WDFY family member 4##NM_020945|WDFY4|57705|WDFY family member 4##NM_001006939|LRRC18|474354|leucine rich repeat containing 18##BC036722|LRRC18|474354|leucine rich repeat containing 18	0.0	0.167844	
chr13	47156370	47156550	reg1003830.p1	4.880	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-28953	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-29040	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-29137	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	214855	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	314607	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1418991	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.995323	0.0	
chr1	85186008	85186128	reg1004345.p1	4.880	+	AY367055 TSC_hg19_v1_chr1_-_85156128 AK316472 AK307336 BC064389 BC033637 AK294057 AK292475 NM_001166295 NM_001166417 AL133046 AB023140 NM_001166293 NM_001166294 NM_014021	-29992	-	TSC_hg19_v1_chr1_-_85040102 CU692842 M95767 AK075423 BC065191 AK298703 AK314640 BC126333 BC126335 BC024007 BC096752 NM_004388	-145962	-	TSC_hg19_v1_chr1_-_84972262 NM_005274	-213799	-	TSC_hg19_v1_chr1_-_85358890 AK308283 NM_012152	172818	-	BC104891 BC104893 TSC_hg19_v1_chr1_-_85462793 AK094010 AK309858 AX748410 NM_153259	276640	-	AF475085 AK001868 BC060765 TSC_hg19_v1_chr1_-_85514153 AK292206	328077	-	AY367055|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK316472|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK307336|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC064389|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC033637|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK294057|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK292475|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166295|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166417|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AL133046|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AB023140|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166293|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166294|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_014021|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##M95767|CTBS|1486|chitobiase, di-N-acetyl-##AK075423|CTBS|1486|chitobiase, di-N-acetyl-##BC065191|CTBS|1486|chitobiase, di-N-acetyl-##AK298703|CTBS|1486|chitobiase, di-N-acetyl-##AK314640|CTBS|1486|chitobiase, di-N-acetyl-##BC126333|CTBS|1486|chitobiase, di-N-acetyl-##BC126335|CTBS|1486|chitobiase, di-N-acetyl-##BC024007|CTBS|1486|chitobiase, di-N-acetyl-##BC096752|CTBS|1486|chitobiase, di-N-acetyl-##NM_004388|CTBS|1486|chitobiase, di-N-acetyl-##NM_005274|GNG5|2787|guanine nucleotide binding protein (G protein), gamma 5##AK308283|LPAR3|23566|lysophosphatidic acid receptor 3##NM_012152|LPAR3|23566|lysophosphatidic acid receptor 3##BC104891|MCOLN2|255231|mucolipin 2##BC104893|MCOLN2|255231|mucolipin 2##AK094010|MCOLN2|255231|mucolipin 2##AK309858|MCOLN2|255231|mucolipin 2##NM_153259|MCOLN2|255231|mucolipin 2##AF475085|MCOLN3|55283|mucolipin 3##AK001868|MCOLN3|55283|mucolipin 3##BC060765|MCOLN3|55283|mucolipin 3##AK292206|MCOLN3|55283|mucolipin 3	0.0	0.0	
chr10	1582078	1582178	reg1010413.p1	4.879	+	TSC_hg19_v1_chr10_+_1102822 AK292591	-479302	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-479359	+	BC057827 TSC_hg19_v1_chr10_-_1102645	-479476	-	AF034837 NM_018702	197541	-	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	1527619	+	AK092597 AX747622 NM_001242339	1528690	+	AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC057827|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet	0.996997	0.0	denovo_WM_7:36:0.997
chr15	41177014	41177134	reg1010530.p2	4.879	+	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	-10627	-	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-40373	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-40724	+	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	9626	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	44624	+	NM_001142776 NM_024111 TSC_hg19_v1_chr15_+_41245671 BC019625 BC001683 BC001847 AY702027	68630	+	AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)##NM_001142776|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##NM_024111|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC019625|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001683|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001847|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##AY702027|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)	0.980549	0.0	denovo_WM_7:19:0.486	denovo_WM_7:21:0.426
chr19	7472594	7472739	reg1004422.p1	4.879	+	TSC_hg19_v1_chr19_+_7460061 AB011093	-12589	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	-12659	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-178706	-	AK127045 NM_001130955	31907	+	TSC_hg19_v1_chr19_-_7553914 CU679101 AB095921 BC008780 NM_080662	81236	-	NM_198534 AK093103 AX747925 BC029824 BC034779	89803	+	AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB095921|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##BC008780|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##NM_080662|PEX11G|92960|peroxisomal biogenesis factor 11 gamma##NM_198534|C19orf45|374877|chromosome 19 open reading frame 45##AK093103|C19orf45|374877|chromosome 19 open reading frame 45##BC029824|C19orf45|374877|chromosome 19 open reading frame 45##BC034779|C19orf45|374877|chromosome 19 open reading frame 45	0.020057	0.0	
chr8	70675735	70675856	reg1009261.p1	4.879	+	AY101175 TSC_hg19_v1_chr8_+_70405081 AK055607 BX571746	-270706	+	NM_001128205 NM_001128206 TSC_hg19_v1_chr8_+_70405045	-270756	+	TSC_hg19_v1_chr8_+_70379077 AK307951	-296715	+	BC137424 BC144618 NM_001146009	69608	-	AK022760 NM_001146008	69829	-	AK308488 AF205075 AK096879 NM_030958	71454	-	AY101175|SULF1|23213|sulfatase 1##AK055607|SULF1|23213|sulfatase 1##BX571746|SULF1|23213|sulfatase 1##NM_001128205|SULF1|23213|sulfatase 1##NM_001128206|SULF1|23213|sulfatase 1##AK307951|SULF1|23213|sulfatase 1##BC137424|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC144618|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146009|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK022760|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146008|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1	1.992269	0.0	denovo_WM_7:62:0.217	denovo_WM_7:84:0.212
chr8	91960574	91960712	reg1009313.p1	4.879	+	AF414126 TSC_hg19_v1_chr8_+_91803956 NM_022351 AK095533 BC068448 AY224210	-156698	+	TSC_hg19_v1_chr8_-_91657970 AY147881 NM_001008495 NM_001146273	-302628	-	AK300583 AK123958 AL834364 TSC_hg19_v1_chr8_-_91657856	-302845	-	TSC_hg19_v1_chr8_-_91997476 NM_001190972	36819	-	TSC_hg19_v1_chr8_-_92053091 AX775961 BC033892 AK313783 NM_018710	92479	-	TSC_hg19_v1_chr8_-_92082268 BC067244 BC105990 BC030623	121696	-	AF414126|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##NM_022351|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AK095533|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##BC068448|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AY224210|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AY147881|TMEM64|169200|transmembrane protein 64##NM_001008495|TMEM64|169200|transmembrane protein 64##NM_001146273|TMEM64|169200|transmembrane protein 64##AK300583|TMEM64|169200|transmembrane protein 64##AK123958|TMEM64|169200|transmembrane protein 64##AL834364|TMEM64|169200|transmembrane protein 64##NM_001190972|LOC100127983|100127983|uncharacterized LOC100127983##AX775961|TMEM55A|55529|transmembrane protein 55A##BC033892|TMEM55A|55529|transmembrane protein 55A##AK313783|TMEM55A|55529|transmembrane protein 55A##NM_018710|TMEM55A|55529|transmembrane protein 55A	0.987745	0.999507	denovo_WM_7:12:0.976	CTCF.p2:50:1.000
chr9	135117877	135118019	reg1002418.p2	4.879	+	AB058760 NM_032536 TSC_hg19_v1_chr9_+_135037469	-80545	+	TSC_hg19_v1_chr9_+_135037083 AY358165	-80857	+	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	-162698	-	TSC_hg19_v1_chr9_-_135230312 AK125448	112282	-	TSC_hg19_v1_chr9_-_135230352 AK307608 BX537849	112400	-	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	112459	-	AB058760|NTNG2|84628|netrin G2##NM_032536|NTNG2|84628|netrin G2##AY358165|NTNG2|84628|netrin G2##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AK125448|SETX|23064|senataxin##AK307608|SETX|23064|senataxin##BX537849|SETX|23064|senataxin##BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin	0.0	0.0	
chr11	120175651	120175762	reg1009736.p2	4.878	+	AK291993 NM_014352 AF162278 BC101649 BC143593 BC143594 BC143595 AF133895 AJ012214 EU446698	-64729	+	AK302212 NM_001244682	-68358	+	TSC_hg19_v1_chr11_+_120081739 BC047726 NM_178507 BC008339	-93993	+	AK128040 NM_001198670 NM_001198671 NM_001198672 NM_001198673 NM_001198674 NM_001198675 NM_174926	20131	+	AK096207 AK304086 TSC_hg19_v1_chr11_+_120196007 AK289680 AK294713 BC015232	20312	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	31398	+	AK291993|POU2F3|25833|POU class 2 homeobox 3##NM_014352|POU2F3|25833|POU class 2 homeobox 3##AF162278|POU2F3|25833|POU class 2 homeobox 3##BC101649|POU2F3|25833|POU class 2 homeobox 3##BC143593|POU2F3|25833|POU class 2 homeobox 3##BC143594|POU2F3|25833|POU class 2 homeobox 3##BC143595|POU2F3|25833|POU class 2 homeobox 3##AF133895|POU2F3|25833|POU class 2 homeobox 3##AJ012214|POU2F3|25833|POU class 2 homeobox 3##EU446698|POU2F3|25833|POU class 2 homeobox 3##AK302212|POU2F3|25833|POU class 2 homeobox 3##NM_001244682|POU2F3|25833|POU class 2 homeobox 3##BC047726|OAF|220323|OAF homolog (Drosophila)##NM_178507|OAF|220323|OAF homolog (Drosophila)##BC008339|OAF|220323|OAF homolog (Drosophila)##AK128040|TMEM136|219902|transmembrane protein 136##NM_001198670|TMEM136|219902|transmembrane protein 136##NM_001198671|TMEM136|219902|transmembrane protein 136##NM_001198672|TMEM136|219902|transmembrane protein 136##NM_001198673|TMEM136|219902|transmembrane protein 136##NM_001198674|TMEM136|219902|transmembrane protein 136##NM_001198675|TMEM136|219902|transmembrane protein 136##NM_174926|TMEM136|219902|transmembrane protein 136##AK096207|TMEM136|219902|transmembrane protein 136##AK304086|TMEM136|219902|transmembrane protein 136##AK289680|TMEM136|219902|transmembrane protein 136##AK294713|TMEM136|219902|transmembrane protein 136##BC015232|TMEM136|219902|transmembrane protein 136##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12	1.990553	0.0	denovo_WM_7:-32:0.862	denovo_WM_7:-47:0.880
chr14	62025973	62026130	reg1005025.p2	4.878	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-237524	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-277529	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-277857	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	136139	+	FJ790247 NM_001243084	138288	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	203068	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.0	0.0	
chr19	7213376	7213484	reg1007695.p1	4.878	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-113879	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-143715	+	AK315405 NM_001044387 NM_001044388 NM_024341	-143968	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	80530	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	246577	+	TSC_hg19_v1_chr19_+_7460061 AB011093	246647	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.986052	0.0	denovo_WM_7:-66:0.246	denovo_WM_7:-67:0.246	denovo_WM_7:-68:0.246	denovo_WM_7:-69:0.248
chr7	17109915	17110042	reg1010787.p1	4.878	+	AY359065 BC058284 NM_176813	-188374	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-265307	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-316522	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	228291	+	TSC_hg19_v1_chr7_+_17382906 BC021696	272928	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	870071	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.854922	0.0	denovo_WM_7:-22:0.395	denovo_WM_7:-23:0.322
chr7	35731599	35731701	reg1009566.p1	4.878	+	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	-437920	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	-505858	-	DQ287932 NM_015283	-653998	-	TSC_hg19_v1_chr7_-_35734533 BC005091	2946	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	3089	-	TSC_hg19_v1_chr7_-_35734795 NM_022373	3128	-	NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC005091|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##NM_022373|HERPUD2|64224|HERPUD family member 2	0.0	0.0	
chr8	26519447	26519546	reg1010444.p1	4.878	+	NM_001244604 TSC_hg19_v1_chr8_+_26435921 AK299077	-83569	+	TSC_hg19_v1_chr8_+_26435604 U17279 AB370194 AB590733 BT006944 CU691152	-83816	+	TSC_hg19_v1_chr8_+_26435468 AK223557 BC056408 D78013 BC010880 AK291287	-83969	+	U02569 AY491775 AY491776 AY491777 AY491778 AY491779 AY491780 AY491781 D25235 D32201 D32202 NM_000680 NM_033302 NM_033303 NM_033304	203422	-	AK311558 TSC_hg19_v1_chr8_-_26724735	205238	-	TSC_hg19_v1_chr8_-_26724764 AK289548	205262	-	NM_001244604|DPYSL2|1808|dihydropyrimidinase-like 2##AK299077|DPYSL2|1808|dihydropyrimidinase-like 2##U17279|DPYSL2|1808|dihydropyrimidinase-like 2##AB370194|DPYSL2|1808|dihydropyrimidinase-like 2##AK223557|DPYSL2|1808|dihydropyrimidinase-like 2##BC056408|DPYSL2|1808|dihydropyrimidinase-like 2##D78013|DPYSL2|1808|dihydropyrimidinase-like 2##AK291287|DPYSL2|1808|dihydropyrimidinase-like 2##U02569|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491775|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491776|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491777|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491778|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491780|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491781|ADRA1A|148|adrenergic, alpha-1A-, receptor##D25235|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32201|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32202|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_000680|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033302|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033303|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033304|ADRA1A|148|adrenergic, alpha-1A-, receptor##AK289548|ADRA1A|148|adrenergic, alpha-1A-, receptor	0.964969	0.9214	CTCF.p2:15:0.921	denovo_WM_7:46:0.862
chr11	19092855	19092994	reg1009477.p1	4.877	+	BC063450 NM_054030	-10697	-	BC096835 NM_147199	-136378	-	AK294374 BC064807 AK316270 AK294673 BC039897 AK295604 AK090923 AX746685 AL832541 NM_001039970 NM_006906 NM_032781 TSC_hg19_v1_chr11_-_18813404	-279659	-	TSC_hg19_v1_chr11_+_19138714 BC050690 BC056152 NM_001001483 NM_019028 AB097014 AB097027 AK001714 BX648156 BC036020 AK291348 AB024495 CU691124	45793	+	U20324 U72899 U49837 BC057221 NM_001127656 TSC_hg19_v1_chr11_-_19223531 AK313289 NM_003476 AF121260	130634	-	TSC_hg19_v1_chr11_-_19262479 AK055206 BC108700 BC126400 BC126402 NM_024680	169551	-	BC063450|MRGPRX2|117194|MAS-related GPR, member X2##NM_054030|MRGPRX2|117194|MAS-related GPR, member X2##BC096835|MRGPRX1|259249|MAS-related GPR, member X1##NM_147199|MRGPRX1|259249|MAS-related GPR, member X1##AK294374|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##BC064807|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##AK316270|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##AK294673|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##BC039897|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##AK295604|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##AK090923|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##AL832541|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##NM_001039970|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##NM_006906|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##NM_032781|PTPN5|84867|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)##BC050690|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC056152|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_001001483|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_019028|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097014|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097027|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK001714|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BX648156|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC036020|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK291348|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB024495|ZDHHC13|54503|zinc finger, DHHC-type containing 13##U20324|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U72899|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U49837|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##BC057221|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_001127656|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK313289|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_003476|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AF121260|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK055206|E2F8|79733|E2F transcription factor 8##BC108700|E2F8|79733|E2F transcription factor 8##BC126400|E2F8|79733|E2F transcription factor 8##BC126402|E2F8|79733|E2F transcription factor 8##NM_024680|E2F8|79733|E2F transcription factor 8	0.0	0.374533	CTCF.p2:-43:0.200
chr15	31521714	31521888	reg1011163.p1	4.877	+	GQ502181 HM135791 NM_001252020	-68373	-	AF071787 BC033627 BC005892 BC017849 HM135790 BC058286 BC070356 NM_001252024 NM_001252030 NM_002420	-127884	-	AK000320 AB528758 AM392869 TSC_hg19_v1_chr15_-_31283808 BC094750 BC063296 NM_017762	-238034	-	NM_001243538	1248	-	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	97537	+	AJ430383 NM_130901	425740	-	GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF071787|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC033627|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC005892|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC017849|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135790|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC058286|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC070356|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252024|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252030|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_002420|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AK000320|MTMR10|54893|myotubularin related protein 10##AM392869|MTMR10|54893|myotubularin related protein 10##BC094750|MTMR10|54893|myotubularin related protein 10##BC063296|MTMR10|54893|myotubularin related protein 10##NM_017762|MTMR10|54893|myotubularin related protein 10##NM_001243538|LOC283710|283710|uncharacterized LOC283710##AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A	0.995688	0.0	denovo_WM_7:97:0.201	denovo_WM_7:98:0.571
chr19	950767	950888	reg1010374.p1	4.877	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-24816	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-33434	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-37603	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	33507	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	49538	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	70231	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	0.976662	0.0	denovo_WM_7:4:0.850
chr5	14143297	14143429	reg1010097.p2	4.877	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-131493	-	AX800026 AY045575 NM_001369	-198775	-	TSC_hg19_v1_chr5_-_11904184 AK296232	-2239179	-	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	309	+	TSC_hg19_v1_chr5_+_14488527 AK131423	345176	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	438537	+	AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK296232|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A	0.0	0.0	
chr12	129341262	129341381	reg1011500.p1	4.875	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	-3234	+	BC043528 TSC_hg19_v1_chr12_+_129337985	-3337	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	-32878	-	BC114626 BC114936 NM_133448 AB061814	1046890	-	AK056047 TSC_hg19_v1_chr12_-_130646911	1305535	-	TSC_hg19_v1_chr12_+_130647008 BC070037 NM_007197	1305689	+	AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D##AK056047|FLJ31485|440119|uncharacterized LOC440119##BC070037|FZD10|11211|frizzled family receptor 10##NM_007197|FZD10|11211|frizzled family receptor 10	1.280893	0.0	denovo_WM_7:-1:0.498	denovo_WM_7:-9:0.374	denovo_WM_7:35:0.335
chr13	41366956	41367060	reg1011097.p1	4.875	+	AF177333 TSC_hg19_v1_chr13_+_41363756	-3242	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-3324	+	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	-3419	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	128857	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	189188	-	AK304289 BC010575 BC030507 NM_001145353	189380	-	AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.0	0.0	
chr1	52520672	52520771	reg1001226.p1	4.875	+	CU680254 DQ892239 DQ895439 BC012173 TSC_hg19_v1_chr1_-_52499463 AF327348 NM_138417 AK313746	-21250	-	M28214 BC005035 TSC_hg19_v1_chr1_-_52456373 AK291653 NM_002867	-64358	-	TSC_hg19_v1_chr1_-_52344478 NM_001101662 NM_002525	-176201	-	CU674738 BC008953 TSC_hg19_v1_chr1_-_52520864 AK075409 BC001493 BC008913 AY358982 AF131758	107	-	AF543416 NM_015913	325	-	NM_001136497 NM_001243767 NM_152265 TSC_hg19_v1_chr1_+_52521942	1179	+	DQ892239|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##DQ895439|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##BC012173|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##AF327348|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##NM_138417|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##AK313746|KTI12|112970|KTI12 homolog, chromatin associated (S. cerevisiae)##M28214|RAB3B|5865|RAB3B, member RAS oncogene family##BC005035|RAB3B|5865|RAB3B, member RAS oncogene family##AK291653|RAB3B|5865|RAB3B, member RAS oncogene family##NM_002867|RAB3B|5865|RAB3B, member RAS oncogene family##NM_001101662|NRD1|4898|nardilysin (N-arginine dibasic convertase)##NM_002525|NRD1|4898|nardilysin (N-arginine dibasic convertase)##BC008953|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AK075409|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##BC001493|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##BC008913|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AY358982|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AF131758|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##AF543416|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##NM_015913|TXNDC12|51060|thioredoxin domain containing 12 (endoplasmic reticulum)##NM_001136497|BTF3L4|91408|basic transcription factor 3-like 4##NM_001243767|BTF3L4|91408|basic transcription factor 3-like 4##NM_152265|BTF3L4|91408|basic transcription factor 3-like 4	0.0	0.0	
chr22	39861612	39861714	reg1006794.p2	4.874	+	TSC_hg19_v1_chr22_+_39853534 BC075025 BC075026 BC113383 BC113718	-8127	+	TSC_hg19_v1_chr22_+_39853325 NM_002409	-8343	+	TSC_hg19_v1_chr22_+_39795812 AK291668 AK316004 AK308903 AB591024 CU690722	-65852	+	NM_001098270 AK313664 CR456519 D13789 AB463105 CU013119 CU013407 HQ258450	21627	+	TSC_hg19_v1_chr22_+_39898257 NM_019008	36602	+	TSC_hg19_v1_chr22_+_39898332 AL834205	36647	+	BC075025|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075026|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113383|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113718|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##NM_002409|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##AK291668|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK316004|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK308903|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_001098270|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##AK313664|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CR456519|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##D13789|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013119|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013407|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##HQ258450|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##NM_019008|SMCR7L|54471|Smith-Magenis syndrome chromosome region, candidate 7-like##AL834205|SMCR7L|54471|Smith-Magenis syndrome chromosome region, candidate 7-like	0.0	0.0	
chr7	77020598	77020778	reg1009900.p2	4.874	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-191552	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-268742	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-764141	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	25030	-	TSC_hg19_v1_chr7_+_77166392 BC050008	145690	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	146118	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.0	0.0	
chr11	126174159	126174309	reg1010483.p2	4.873	+	TSC_hg19_v1_chr11_+_126173954 AK307403 BC014532 AF077201 CU677035 AY077684	-265	+	TSC_hg19_v1_chr11_+_126173950 AY040771 AK026554 AK223089	-288	+	AF532613 NM_014026	-588	+	TSC_hg19_v1_chr11_-_126225452 AK096370	51229	-	NM_006278 X74570	51861	+	TSC_hg19_v1_chr11_+_126275947 AK291577 AK314738 EU831802 EU831879 AY040826 CR456858	101764	+	AK307403|DCPS|28960|decapping enzyme, scavenger##BC014532|DCPS|28960|decapping enzyme, scavenger##AF077201|DCPS|28960|decapping enzyme, scavenger##AY077684|DCPS|28960|decapping enzyme, scavenger##AY040771|DCPS|28960|decapping enzyme, scavenger##AK026554|DCPS|28960|decapping enzyme, scavenger##AK223089|DCPS|28960|decapping enzyme, scavenger##AF532613|DCPS|28960|decapping enzyme, scavenger##NM_014026|DCPS|28960|decapping enzyme, scavenger##AK096370|FLJ39051|399972|uncharacterized LOC399972##NM_006278|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##X74570|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##AK291577|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##AK314738|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##EU831802|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##EU831879|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##AY040826|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4##CR456858|ST3GAL4|6484|ST3 beta-galactoside alpha-2,3-sialyltransferase 4	0.0	0.0	
chr4	177045334	177045485	reg1011311.p2	4.873	+	TSC_hg19_v1_chr4_+_176987148 BC118549 BC118627 AK098748 DQ426895 DQ426896	-58240	+	BC146812 NM_170710 NM_181265 AF492460 TSC_hg19_v1_chr4_+_176987137	-58348	+	TSC_hg19_v1_chr4_-_176923575 NM_005277 NM_201592	-121800	-	CU692400 TSC_hg19_v1_chr4_-_177116722 BC021731 BC029428 AY040204 NM_144644	71358	-	AY057053 CU688084 AK096441 BC065710 BX647857 NM_080874	144906	-	TSC_hg19_v1_chr4_+_177241098 NM_021928	195644	+	BC118549|WDR17|116966|WD repeat domain 17##BC118627|WDR17|116966|WD repeat domain 17##AK098748|WDR17|116966|WD repeat domain 17##DQ426895|WDR17|116966|WD repeat domain 17##DQ426896|WDR17|116966|WD repeat domain 17##BC146812|WDR17|116966|WD repeat domain 17##NM_170710|WDR17|116966|WD repeat domain 17##NM_181265|WDR17|116966|WD repeat domain 17##AF492460|WDR17|116966|WD repeat domain 17##NM_005277|GPM6A|2823|glycoprotein M6A##NM_201592|GPM6A|2823|glycoprotein M6A##BC021731|SPATA4|132851|spermatogenesis associated 4##BC029428|SPATA4|132851|spermatogenesis associated 4##AY040204|SPATA4|132851|spermatogenesis associated 4##NM_144644|SPATA4|132851|spermatogenesis associated 4##AY057053|ASB5|140458|ankyrin repeat and SOCS box containing 5##AK096441|ASB5|140458|ankyrin repeat and SOCS box containing 5##BC065710|ASB5|140458|ankyrin repeat and SOCS box containing 5##BX647857|ASB5|140458|ankyrin repeat and SOCS box containing 5##NM_080874|ASB5|140458|ankyrin repeat and SOCS box containing 5##NM_021928|SPCS3|60559|signal peptidase complex subunit 3 homolog (S. cerevisiae)	0.0	0.0	
chr5	35302856	35302982	reg1009334.p1	4.873	+	NM_000949	-72097	-	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	-72342	-	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	-184696	-	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	315090	+	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	554114	+	NM_001042625 BC017586 NM_144647	635889	-	NM_000949|PRLR|5618|prolactin receptor##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like	0.0	0.0	
chr7	120478303	120478483	reg1009553.p2	4.873	+	AK307139 AB028967 NM_012281	-564689	+	NM_019644 AK302407	-2613659	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-2654222	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	19627	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	19767	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	112488	+	AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3	0.0	0.0	
chr8	131421492	131421625	reg1010709.p1	4.873	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-392675	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-392864	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-392899	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	34473	-	NM_001115	631276	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1494799	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.995112	0.0	denovo_WM_7:-41:0.693
chr11	927712	927875	reg1010333.p1	4.872	+	AB020706 CU675277 DQ893441 DQ896779 AK299364 TSC_hg19_v1_chr11_+_926056	-1751	+	AK027891 TSC_hg19_v1_chr11_+_925899 AK293763	-1867	+	TSC_hg19_v1_chr11_+_925876 AK001986 AK223558 BC006155	-1907	+	U97698 AK092533 TSC_hg19_v1_chr11_-_1016879 AK098503	89073	-	TSC_hg19_v1_chr11_-_1017140 AK096772	89414	-	AY458429 AY312160 NM_005961 TSC_hg19_v1_chr11_-_1036715	108893	-	AB020706|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##DQ893441|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##DQ896779|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##AK299364|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##AK027891|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##AK293763|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##AK001986|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##AK223558|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##BC006155|AP2A2|161|adaptor-related protein complex 2, alpha 2 subunit##U97698|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##AK092533|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##AK098503|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##AK096772|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##AY458429|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##AY312160|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##NM_005961|MUC6|4588|mucin 6, oligomeric mucus/gel-forming	0.998799	0.0	
chr16	87810511	87810655	reg1009850.p1	4.872	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-11013	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-11068	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-173873	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	92492	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	159564	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	174585	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	1.937554	0.0	denovo_WM_7:1:0.482	denovo_WM_7:4:0.459
chr3	28368245	28368425	reg1001334.p2	4.872	+	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	-85237	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-604134	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-604542	-	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	22047	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	22226	-	NM_001040432	63651	+	CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2	0.0	0.0	
chr3	66522750	66522887	reg1009874.p1	4.872	+	TSC_hg19_v1_chr3_+_66444897 AB075504	-77859	+	NM_001164796	-251651	+	AK092495 AX747571 NM_173471	-403534	+	AF381545 BC140907 NM_015541 AY730707	28034	-	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	28646	-	NM_032505 AK096640 AK300397	525910	+	NM_001164796|SLC25A26|115286|solute carrier family 25, member 26##AK092495|SLC25A26|115286|solute carrier family 25, member 26##AX747571|SLC25A26|115286|solute carrier family 25, member 26##NM_173471|SLC25A26|115286|solute carrier family 25, member 26##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_032505|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK096640|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK300397|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8	1.989708	0.0	denovo_WM_7:-67:0.932	denovo_WM_7:-82:0.955
chr17	27226013	27226133	reg1011139.p1	4.871	+	TSC_hg19_v1_chr17_-_27224717 NM_004475	-1361	-	M60922 CU678570 AB528533 BC003683 TSC_hg19_v1_chr17_-_27224641	-1465	-	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	-44050	+	AX795344 TSC_hg19_v1_chr17_-_27229986 AX795345 AX795340 AX795338 AX795342 BC015582 AX795337 AX795341 AX795339 AX795335 AX795336 AK296017 AX795346 AX795343 AY358566 NM_144683	3932	-	TSC_hg19_v1_chr17_-_27240983 AK024290	14940	-	BC110882 TSC_hg19_v1_chr17_-_27278336	52257	-	NM_004475|FLOT2|2319|flotillin 2##M60922|FLOT2|2319|flotillin 2##BC003683|FLOT2|2319|flotillin 2##AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC015582|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AK296017|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AY358566|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_144683|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AK024290|PHF12|57649|PHD finger protein 12##BC110882|PHF12|57649|PHD finger protein 12	1.539993	0.0	denovo_WM_7:-9:0.904	denovo_WM_7:9:0.536
chr19	10339480	10339660	reg1005880.p1	4.871	+	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-33843	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-33965	-	AB209413 TSC_hg19_v1_chr19_-_10305579	-34013	-	NM_004230 TSC_hg19_v1_chr19_-_10342058	2436	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	23077	+	TSC_hg19_v1_chr19_+_10362889 BC009858	23328	+	BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AB209413|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chr19	17337157	17337337	reg1012369.p2	4.871	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	-213	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	-11042	+	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	-11075	+	AB307712 AB463945 AK298764 HQ692851 TSC_hg19_v1_chr19_-_17356214 BC063018 BC084544 BC002669 NM_005234 AK314961	18893	-	AB026290 AB040046 AK300617 AK096028 BC027910 NM_031941 AK315239 AK292031	38300	-	TSC_hg19_v1_chr19_+_17378251 AK308590 AK299493 NM_001033549 NM_014173 AF161491 AK025970 AK301193 BC006244 AL136692 AK225047	40958	+	BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB307712|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AK298764|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##HQ692851|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC063018|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC084544|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##BC002669|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##NM_005234|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AK314961|NR2F6|2063|nuclear receptor subfamily 2, group F, member 6##AB026290|USHBP1|83878|Usher syndrome 1C binding protein 1##AB040046|USHBP1|83878|Usher syndrome 1C binding protein 1##AK300617|USHBP1|83878|Usher syndrome 1C binding protein 1##AK096028|USHBP1|83878|Usher syndrome 1C binding protein 1##BC027910|USHBP1|83878|Usher syndrome 1C binding protein 1##NM_031941|USHBP1|83878|Usher syndrome 1C binding protein 1##AK315239|USHBP1|83878|Usher syndrome 1C binding protein 1##AK292031|USHBP1|83878|Usher syndrome 1C binding protein 1##AK308590|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK299493|BABAM1|29086|BRISC and BRCA1 A complex member 1##NM_001033549|BABAM1|29086|BRISC and BRCA1 A complex member 1##NM_014173|BABAM1|29086|BRISC and BRCA1 A complex member 1##AF161491|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK025970|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK301193|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC006244|BABAM1|29086|BRISC and BRCA1 A complex member 1##AL136692|BABAM1|29086|BRISC and BRCA1 A complex member 1##AK225047|BABAM1|29086|BRISC and BRCA1 A complex member 1	0.0	0.02646	
chr4	40552996	40553143	reg1013231.p1	4.871	+	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-35111	-	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	-36485	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-215624	+	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	78796	-	AK304206 TSC_hg19_v1_chr4_-_40632775	79638	-	BC042401 NM_024677 BC036568 AK024063	198877	+	AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK304206|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7	0.0	0.711148	CTCF.p2:-19:0.711
chr7	23312805	23312950	reg1012316.p2	4.871	+	AF322909 TSC_hg19_v1_chr7_+_23286426 BC025297 BC011595 CU679974 CU689536 AB528457 DQ892084 DQ895277 BT007074	-26429	+	TSC_hg19_v1_chr7_+_23286407 AJ505015	-26472	+	TSC_hg19_v1_chr7_+_23286393 AK292078 AK296779 AK297031 AK297803 AY359124 BC032783	-26483	+	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	26088	+	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	196802	-	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	197121	-	AF322909|GPNMB|10457|glycoprotein (transmembrane) nmb##BC025297|GPNMB|10457|glycoprotein (transmembrane) nmb##BC011595|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ892084|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ895277|GPNMB|10457|glycoprotein (transmembrane) nmb##BT007074|GPNMB|10457|glycoprotein (transmembrane) nmb##AJ505015|GPNMB|10457|glycoprotein (transmembrane) nmb##AK292078|GPNMB|10457|glycoprotein (transmembrane) nmb##AK296779|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297031|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297803|GPNMB|10457|glycoprotein (transmembrane) nmb##AY359124|GPNMB|10457|glycoprotein (transmembrane) nmb##BC032783|GPNMB|10457|glycoprotein (transmembrane) nmb##BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	0.0	0.043023	
chr8	102428822	102429002	reg1011758.p2	4.871	+	TSC_hg19_v1_chr8_-_102217929 NM_001042510 NM_016096	-210958	-	TSC_hg19_v1_chr8_-_102217877 NM_001042511	-211036	-	BC035233 TSC_hg19_v1_chr8_-_102217845 BC015925 AF125099 AF275802 AF275809 AK290477 BC068524	-211219	-	TSC_hg19_v1_chr8_+_102504667 NM_024915 AK296817 AK310221	75753	+	TSC_hg19_v1_chr8_+_102504840 AK023844 AK292853 BC069618 BC069633 BC069638 BC129822 BC129823	75998	+	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	374271	-	NM_001042510|ZNF706|51123|zinc finger protein 706##NM_016096|ZNF706|51123|zinc finger protein 706##NM_001042511|ZNF706|51123|zinc finger protein 706##BC035233|ZNF706|51123|zinc finger protein 706##BC015925|ZNF706|51123|zinc finger protein 706##AF125099|ZNF706|51123|zinc finger protein 706##AF275802|ZNF706|51123|zinc finger protein 706##AF275809|ZNF706|51123|zinc finger protein 706##AK290477|ZNF706|51123|zinc finger protein 706##BC068524|ZNF706|51123|zinc finger protein 706##NM_024915|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK296817|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK310221|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK023844|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK292853|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069618|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069633|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069638|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129822|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129823|GRHL2|79977|grainyhead-like 2 (Drosophila)##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta	1.95809	0.0	denovo_WM_7:-70:0.969	denovo_WM_7:-85:0.975
chr1	113157200	113157302	reg1011651.p1	4.870	+	BC141825 NM_024494	-105882	+	AB045116 NM_004185	-147212	+	TSC_hg19_v1_chr1_+_112938871 BC016029 AK022544 AK092791 AX747733	-218383	+	TSC_hg19_v1_chr1_+_113161808 BX648738	4542	+	BC027898 TSC_hg19_v1_chr1_-_113161750 AK021719 CU688054 EU831659 EU831742 AK295507 AK295955 AK291042 AK308727 AK304004 BC047392 BX640667 AB081317 AB081318 AB081319 AB081320 BC065501 NM_017744 NM_138727 NM_138728 NM_138729	4630	-	NM_006135 TSC_hg19_v1_chr1_+_113162092	4832	+	BC141825|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_024494|WNT2B|7482|wingless-type MMTV integration site family, member 2B##AB045116|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_004185|WNT2B|7482|wingless-type MMTV integration site family, member 2B##BC016029|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK022544|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK092791|LOC100129406|100129406|uncharacterized LOC100129406##BX648738|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##BC027898|ST7L|54879|suppression of tumorigenicity 7 like##AK021719|ST7L|54879|suppression of tumorigenicity 7 like##EU831659|ST7L|54879|suppression of tumorigenicity 7 like##EU831742|ST7L|54879|suppression of tumorigenicity 7 like##AK295507|ST7L|54879|suppression of tumorigenicity 7 like##AK295955|ST7L|54879|suppression of tumorigenicity 7 like##AK291042|ST7L|54879|suppression of tumorigenicity 7 like##AK308727|ST7L|54879|suppression of tumorigenicity 7 like##AK304004|ST7L|54879|suppression of tumorigenicity 7 like##BC047392|ST7L|54879|suppression of tumorigenicity 7 like##BX640667|ST7L|54879|suppression of tumorigenicity 7 like##AB081317|ST7L|54879|suppression of tumorigenicity 7 like##AB081318|ST7L|54879|suppression of tumorigenicity 7 like##AB081319|ST7L|54879|suppression of tumorigenicity 7 like##AB081320|ST7L|54879|suppression of tumorigenicity 7 like##BC065501|ST7L|54879|suppression of tumorigenicity 7 like##NM_017744|ST7L|54879|suppression of tumorigenicity 7 like##NM_138727|ST7L|54879|suppression of tumorigenicity 7 like##NM_138728|ST7L|54879|suppression of tumorigenicity 7 like##NM_138729|ST7L|54879|suppression of tumorigenicity 7 like##NM_006135|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1	0.214172	0.079669	
chr1	210559470	210559556	reg1010712.p2	4.870	+	NM_001170580 BC051191	-56872	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-57248	+	NM_001122834 NM_001170564 AK297193	-57917	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	747872	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	873195	+	TSC_hg19_v1_chr1_+_211432726 AK131312	873214	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	1.992414	0.0	denovo_WM_7:64:0.547	denovo_WM_7:79:0.347	denovo_WM_7:80:0.358
chr13	21615069	21615153	reg1007793.p2	4.870	+	TSC_hg19_v1_chr13_-_21476909 NM_022459	-138174	-	BC050680 AB051508 AB384273 AK057924 BC098402 TSC_hg19_v1_chr13_-_21476886 AK302760	-138241	-	TSC_hg19_v1_chr13_-_21348081 AK055408 AK316604	-267024	-	TSC_hg19_v1_chr13_-_21635685 BC127671 AF207547 AB209897 BC071572	20554	-	TSC_hg19_v1_chr13_-_21635719 NM_014572	20605	-	NM_005870 TSC_hg19_v1_chr13_+_21714679	99556	+	NM_022459|XPO4|64328|exportin 4##BC050680|XPO4|64328|exportin 4##AB051508|XPO4|64328|exportin 4##AK057924|XPO4|64328|exportin 4##BC098402|XPO4|64328|exportin 4##AK302760|XPO4|64328|exportin 4##AK316604|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC127671|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AF207547|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AB209897|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##BC071572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##NM_014572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##NM_005870|SAP18|10284|Sin3A-associated protein, 18kDa	0.909952	0.40967	denovo_WM_7:11:0.719	CTCF.p2:-11:0.410
chr19	18111065	18111167	reg1017804.p1	4.870	+	NM_002248 U69883	-49006	+	BC013949 NM_138442	-65212	+	TSC_hg19_v1_chr19_+_18043824 NM_001136203	-67292	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	834	+	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	7902	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	86616	-	NM_002248|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##U69883|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##BC013949|CCDC124|115098|coiled-coil domain containing 124##NM_138442|CCDC124|115098|coiled-coil domain containing 124##NM_001136203|CCDC124|115098|coiled-coil domain containing 124##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1	0.994675	0.0	
chr20	52259829	52260004	reg1012425.p2	4.870	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-49117	-	AF041259 NM_006526	-60281	-	AK302570 NM_001193421	-458095	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	427146	-	AK315220 NM_003657	427387	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	530604	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr13	111214587	111214750	reg1007134.p1	4.869	+	AJ272065 CU693106 DQ892145 DQ895340 TSC_hg19_v1_chr13_-_111214042 AK000436 AK000446 NM_017817 BC026025	-696	-	X05610 TSC_hg19_v1_chr13_+_111154089	-60617	+	TSC_hg19_v1_chr13_+_111138079 M24766	-76580	+	TSC_hg19_v1_chr13_+_111267870 NM_001242882 NM_001242883	53162	+	TSC_hg19_v1_chr13_+_111267898 AK093771 AK298917 AX748297 AK302117 AK057767 AK296758 NM_001242881 NM_018210 AK296227 AK024260 BC041028 AK001631 AK225129	53374	+	TSC_hg19_v1_chr13_-_111268694 AK095260	54030	-	AJ272065|RAB20|55647|RAB20, member RAS oncogene family##DQ892145|RAB20|55647|RAB20, member RAS oncogene family##DQ895340|RAB20|55647|RAB20, member RAS oncogene family##AK000436|RAB20|55647|RAB20, member RAS oncogene family##AK000446|RAB20|55647|RAB20, member RAS oncogene family##NM_017817|RAB20|55647|RAB20, member RAS oncogene family##BC026025|RAB20|55647|RAB20, member RAS oncogene family##X05610|COL4A2|1284|collagen, type IV, alpha 2##M24766|COL4A2|1284|collagen, type IV, alpha 2##NM_001242882|CARKD|55739|carbohydrate kinase domain containing##NM_001242883|CARKD|55739|carbohydrate kinase domain containing##AK093771|CARKD|55739|carbohydrate kinase domain containing##AK298917|CARKD|55739|carbohydrate kinase domain containing##AK302117|CARKD|55739|carbohydrate kinase domain containing##AK057767|CARKD|55739|carbohydrate kinase domain containing##AK296758|CARKD|55739|carbohydrate kinase domain containing##NM_001242881|CARKD|55739|carbohydrate kinase domain containing##NM_018210|CARKD|55739|carbohydrate kinase domain containing##AK296227|CARKD|55739|carbohydrate kinase domain containing##AK024260|CARKD|55739|carbohydrate kinase domain containing##BC041028|CARKD|55739|carbohydrate kinase domain containing##AK001631|CARKD|55739|carbohydrate kinase domain containing##AK225129|CARKD|55739|carbohydrate kinase domain containing	0.981736	0.0	
chr14	50336996	50337176	reg1009201.p2	4.869	+	TSC_hg19_v1_chr14_-_50329567 X02067	-7490	-	TSC_hg19_v1_chr14_-_50319530 AK295010 AK293236 BC006001 BC056687 NM_004713	-17553	-	TSC_hg19_v1_chr14_-_50319497 AK304695 AK308537	-17590	-	TSC_hg19_v1_chr14_+_50359731 NM_001663	22644	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	22732	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	22747	+	X02067|RN7SL2|378706|RNA, 7SL, cytoplasmic 2##AK295010|NEMF|9147|nuclear export mediator factor##AK293236|NEMF|9147|nuclear export mediator factor##BC006001|NEMF|9147|nuclear export mediator factor##BC056687|NEMF|9147|nuclear export mediator factor##NM_004713|NEMF|9147|nuclear export mediator factor##AK304695|NEMF|9147|nuclear export mediator factor##AK308537|NEMF|9147|nuclear export mediator factor##NM_001663|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6	0.02462	0.0	
chr18	10465331	10465429	reg1010830.p2	4.869	+	TSC_hg19_v1_chr18_+_10454634 AK300743	-10728	+	TSC_hg19_v1_chr18_+_10454623 AB056722 AB104887 NM_153000	-10758	+	BC053324 TSC_hg19_v1_chr18_+_10454599	-10810	+	TSC_hg19_v1_chr18_+_10526021 NM_003826	60561	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	60648	+	TSC_hg19_v1_chr18_+_10526051 BC001889	60676	+	AK300743|APCDD1|147495|adenomatosis polyposis coli down-regulated 1##AB056722|APCDD1|147495|adenomatosis polyposis coli down-regulated 1##AB104887|APCDD1|147495|adenomatosis polyposis coli down-regulated 1##NM_153000|APCDD1|147495|adenomatosis polyposis coli down-regulated 1##BC053324|APCDD1|147495|adenomatosis polyposis coli down-regulated 1##NM_003826|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma	0.0	0.0	
chr20	48295871	48296051	reg1008464.p1	4.869	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-111272	-	BC110572 BC110573 NM_004975	-196782	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-400766	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	34269	-	AB004550 TSC_hg19_v1_chr20_-_48330359	34395	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	34505	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.969386	0.0	denovo_WM_7:87:0.598	denovo_WM_7:88:0.346
chr3	186882760	186882940	reg1001077.p1	4.869	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	-25594	-	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-143178	+	U67847 TSC_hg19_v1_chr3_+_186714361	-168502	+	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	32492	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	126789	-	BC013161 NM_022147 AJ251832 AY562238 DQ891046 DQ894225	203348	+	L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC013161|RTP4|64108|receptor (chemosensory) transporter protein 4##NM_022147|RTP4|64108|receptor (chemosensory) transporter protein 4##AJ251832|RTP4|64108|receptor (chemosensory) transporter protein 4##AY562238|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ891046|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ894225|RTP4|64108|receptor (chemosensory) transporter protein 4	0.0	0.0	
chr4	71258121	71258284	reg1011412.p2	4.869	+	NM_006685 AK130485 BC094707 D29833 BC015327	-9376	+	AK312075 NM_012390 BC140927 BC144529	-31691	+	NM_033122 AK057459 AK315022 AF380838 BC034492 BC046111 CU692300	-57490	+	NM_021225 BC092438 S83198	5443	+	NM_001145006	38006	+	NM_001145007	79472	+	NM_006685|SMR3B|10879|submaxillary gland androgen regulated protein 3B##BC094707|SMR3B|10879|submaxillary gland androgen regulated protein 3B##D29833|SMR3B|10879|submaxillary gland androgen regulated protein 3B##BC015327|SMR3B|10879|submaxillary gland androgen regulated protein 3B##AK312075|SMR3A|26952|submaxillary gland androgen regulated protein 3A##NM_012390|SMR3A|26952|submaxillary gland androgen regulated protein 3A##BC140927|SMR3A|26952|submaxillary gland androgen regulated protein 3A##BC144529|SMR3B|10879|submaxillary gland androgen regulated protein 3B##NM_033122|CABS1|85438|calcium-binding protein, spermatid-specific 1##AK057459|CABS1|85438|calcium-binding protein, spermatid-specific 1##AK315022|CABS1|85438|calcium-binding protein, spermatid-specific 1##AF380838|CABS1|85438|calcium-binding protein, spermatid-specific 1##BC034492|CABS1|85438|calcium-binding protein, spermatid-specific 1##BC046111|CABS1|85438|calcium-binding protein, spermatid-specific 1##NM_021225|PROL1|58503|proline rich, lacrimal 1##BC092438|PROL1|58503|proline rich, lacrimal 1##S83198|PROL1|58503|proline rich, lacrimal 1##NM_001145006|MUC7|4589|mucin 7, secreted##NM_001145007|MUC7|4589|mucin 7, secreted	0.264006	0.0	denovo_WM_7:-80:0.215
chr16	87812843	87812960	reg1008532.p1	4.868	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-13331	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-13386	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-176191	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	90174	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	157246	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	172267	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.0	0.771109	CTCF.p2:-44:0.771
chr2	68639042	68639190	reg1011138.p2	4.868	+	TSC_hg19_v1_chr2_+_68592449 DQ893586 DQ894896 CU676266 AB528939 CR542056 CR542079	-46659	+	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	-46744	+	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	-92016	-	BC089423 DQ904332 NM_001024680 TSC_hg19_v1_chr2_-_68694427	55294	-	TSC_hg19_v1_chr2_+_68694716 AK290841 NM_173545 AK308186 BC041144 CU691972	55648	+	AB084080 AF506287 AY089976 BC100960 EF577399 NM_138964	233837	+	DQ893586|PLEK|5341|pleckstrin##DQ894896|PLEK|5341|pleckstrin##CR542056|PLEK|5341|pleckstrin##CR542079|PLEK|5341|pleckstrin##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##BC089423|FBXO48|554251|F-box protein 48##DQ904332|FBXO48|554251|F-box protein 48##NM_001024680|FBXO48|554251|F-box protein 48##AK290841|APLF|200558|aprataxin and PNKP like factor##NM_173545|APLF|200558|aprataxin and PNKP like factor##AK308186|APLF|200558|aprataxin and PNKP like factor##BC041144|APLF|200558|aprataxin and PNKP like factor##AB084080|PROKR1|10887|prokineticin receptor 1##AF506287|PROKR1|10887|prokineticin receptor 1##AY089976|PROKR1|10887|prokineticin receptor 1##BC100960|PROKR1|10887|prokineticin receptor 1##EF577399|PROKR1|10887|prokineticin receptor 1##NM_138964|PROKR1|10887|prokineticin receptor 1	0.0	0.0	
chr4	71740927	71741023	reg1003305.p2	4.868	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-35338	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-35398	-	AK094806 NM_001098477	-35772	-	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	27138	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	118332	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	118496	+	NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase	0.995135	0.0	denovo_WM_7:-41:0.974
chr7	74263047	74263187	reg1008956.p1	4.868	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	-74765	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-190995	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-191073	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	4722	-	TSC_hg19_v1_chr7_-_74306679 BC002581	43558	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	43566	-	BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2##AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2	1.010538	0.0	denovo_WM_7:24:0.313	denovo_WM_7:25:0.313	denovo_WM_7:26:0.313
chr2	57691040	57691165	reg1008197.p1	4.867	+	AK311113 TSC_hg19_v1_chr2_-_56412914	-1278193	-	AB384323 TSC_hg19_v1_chr2_+_56411776	-1279336	+	TSC_hg19_v1_chr2_+_56411123 AK311739 AB067499 NM_001080433 BC131557	-1279897	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	582652	+	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	582886	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	777380	-	AK311113|LOC100129434|100129434|uncharacterized LOC100129434##AB067499|CCDC85A|114800|coiled-coil domain containing 85A##NM_001080433|CCDC85A|114800|coiled-coil domain containing 85A##BC131557|CCDC85A|114800|coiled-coil domain containing 85A##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L	1.988443	0.0	denovo_WM_7:50:0.330	denovo_WM_7:51:0.330	denovo_WM_7:52:0.330
chr4	39765494	39765596	reg1000413.p1	4.867	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-65741	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-124989	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-235919	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	213793	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	214048	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	292987	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.0	0.0	
chr5	71593990	71594170	reg1011996.p1	4.867	+	TSC_hg19_v1_chr5_+_71502701 AK125194	-91317	+	TSC_hg19_v1_chr5_+_71403301 BC017240 NM_005909 BC025240 BC139918 BC150196 BC046114 AK096273 AK308147 BX647077 BC039822 BC108733 BC032516 BC073993 BC056145 BC063669 BC094834 AB463119	-190801	+	NM_004291 BC029882 U16826 CR542216 CU688778 EU831800 EU831877	-579026	+	CU687962 D87453 TSC_hg19_v1_chr5_-_71616067 BC064902 BC011818 AK299412 AK025417 AK309065	21978	-	TSC_hg19_v1_chr5_-_71616075 AK300111 NM_015084	22000	-	AK303776 TSC_hg19_v1_chr5_+_71616202 AK056761 NM_024754 AK298750	22122	+	AK125194|MAP1B|4131|microtubule-associated protein 1B##BC017240|MAP1B|4131|microtubule-associated protein 1B##NM_005909|MAP1B|4131|microtubule-associated protein 1B##BC025240|MAP1B|4131|microtubule-associated protein 1B##BC139918|MAP1B|4131|microtubule-associated protein 1B##BC150196|MAP1B|4131|microtubule-associated protein 1B##BC046114|MAP1B|4131|microtubule-associated protein 1B##AK096273|MAP1B|4131|microtubule-associated protein 1B##AK308147|MAP1B|4131|microtubule-associated protein 1B##BX647077|MAP1B|4131|microtubule-associated protein 1B##BC039822|MAP1B|4131|microtubule-associated protein 1B##BC108733|MAP1B|4131|microtubule-associated protein 1B##BC032516|MAP1B|4131|microtubule-associated protein 1B##BC073993|MAP1B|4131|microtubule-associated protein 1B##BC056145|MAP1B|4131|microtubule-associated protein 1B##BC063669|MAP1B|4131|microtubule-associated protein 1B##BC094834|MAP1B|4131|microtubule-associated protein 1B##NM_004291|CARTPT|9607|CART prepropeptide##BC029882|CARTPT|9607|CART prepropeptide##U16826|CARTPT|9607|CART prepropeptide##CR542216|CARTPT|9607|CART prepropeptide##EU831800|CARTPT|9607|CART prepropeptide##EU831877|CARTPT|9607|CART prepropeptide##D87453|MRPS27|23107|mitochondrial ribosomal protein S27##BC064902|MRPS27|23107|mitochondrial ribosomal protein S27##BC011818|MRPS27|23107|mitochondrial ribosomal protein S27##AK299412|MRPS27|23107|mitochondrial ribosomal protein S27##AK025417|MRPS27|23107|mitochondrial ribosomal protein S27##AK309065|MRPS27|23107|mitochondrial ribosomal protein S27##AK300111|MRPS27|23107|mitochondrial ribosomal protein S27##NM_015084|MRPS27|23107|mitochondrial ribosomal protein S27##AK303776|PTCD2|79810|pentatricopeptide repeat domain 2##AK056761|PTCD2|79810|pentatricopeptide repeat domain 2##NM_024754|PTCD2|79810|pentatricopeptide repeat domain 2##AK298750|PTCD2|79810|pentatricopeptide repeat domain 2	0.0	0.0	
chr10	88282106	88282249	reg1007965.p1	4.866	+	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	-647	-	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	-683	-	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-155914	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	132217	+	TSC_hg19_v1_chr10_+_88426539 AK294696	144368	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	146009	+	BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4##AK294696|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3	0.993662	0.0	denovo_WM_7:53:0.238	denovo_WM_7:56:0.376	denovo_WM_7:57:0.243
chr1	144972963	144973079	reg1011244.p1	4.866	+	BC132717 TSC_hg19_v1_chr1_-_144932057 BC004860 NM_001002811	-40974	-	CU687328 TSC_hg19_v1_chr1_-_144931874 BC078660	-41210	-	AY894562 AY894567 AY894568 AY894572 AY894574 NM_001037675	-358063	+	AL832024 AB042556 AL831815 TSC_hg19_v1_chr1_-_144994880	21840	-	AB042557 TSC_hg19_v1_chr1_-_144994917 AL833273 BC005949	21896	-	TSC_hg19_v1_chr1_-_144994947 NM_001002812 NM_014644 NM_001002810 NM_001198834 BC026270 NM_001195261	21991	-	BC132717|PDE4DIP|9659|phosphodiesterase 4D interacting protein##BC004860|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_001002811|PDE4DIP|9659|phosphodiesterase 4D interacting protein##BC078660|PDE4DIP|9659|phosphodiesterase 4D interacting protein##AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894567|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894568|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894572|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894574|NBPF9|400818|neuroblastoma breakpoint family, member 9##NM_001037675|NBPF9|400818|neuroblastoma breakpoint family, member 9##AL832024|PDE4DIP|9659|phosphodiesterase 4D interacting protein##AL831815|PDE4DIP|9659|phosphodiesterase 4D interacting protein##AB042557|PDE4DIP|9659|phosphodiesterase 4D interacting protein##AL833273|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_001002812|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_014644|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_001002810|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_001198834|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_001195261|PDE4DIP|9659|phosphodiesterase 4D interacting protein	0.0	0.0	
chr19	10691748	10691900	reg1013696.p1	4.866	+	TSC_hg19_v1_chr19_-_10679653 NM_001800 BC001822 NM_079421	-12186	-	CR542158 CU674892 U20498 DQ892872 DQ892951 DQ896120 AB464505 U49399 U40343 TSC_hg19_v1_chr19_-_10679530	-12395	-	TSC_hg19_v1_chr19_-_10676697 AK093879 AX748348 NM_023008 AK300850	-15127	-	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	6124	-	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	21309	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	44395	+	NM_001800|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##BC001822|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##NM_079421|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##CR542158|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U20498|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892872|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892951|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ896120|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U49399|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U40343|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##AK093879|KRI1|65095|KRI1 homolog (S. cerevisiae)##NM_023008|KRI1|65095|KRI1 homolog (S. cerevisiae)##AK300850|KRI1|65095|KRI1 homolog (S. cerevisiae)##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2	0.0	0.036152	
chr3	6568549	6568663	reg1010366.p1	4.866	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-1339115	+	TSC_hg19_v1_chr3_+_5229430 D86967	-1339173	+	BC019088 NM_014674 TSC_hg19_v1_chr3_+_5229369	-1339243	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	334193	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	334292	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	1974724	-	DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##D86967|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##BC019088|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##NM_014674|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK124088|LOC100288428|100288428|uncharacterized LOC100288428	1.526878	0.0	denovo_WM_7:-8:0.224	denovo_WM_7:-10:0.258	denovo_WM_7:-23:0.219	denovo_WM_7:-24:0.232	denovo_WM_7:-25:0.489
chr1	8571971	8572047	reg1010299.p1	4.865	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-87992	-	NM_001080397	-187620	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-485611	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	305583	-	GU170215 NM_001201483	359625	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	366698	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	1.991816	0.0	denovo_WM_7:71:0.250	denovo_WM_7:72:0.674	denovo_WM_7:87:0.821
chr9	67322813	67322960	reg1010661.p1	4.865	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-769611	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-828690	-	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	-864390	-	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	603930	+	TSC_hg19_v1_chr9_+_68726468 AK311167	1403616	+	TSC_hg19_v1_chr9_+_69065493 AK311167	1742652	+	BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene	0.998758	0.0	
chr12	11719395	11719575	reg1011371.p1	4.864	+	BC044827 NM_006248	-170994	-	BC044827 K03205 K03206 BC141917 K03204 NM_005039 NM_199353 NM_199354 AX772842	-210969	-	BC130386 BC035362 K03207 NM_002723 BC128191	-256125	-	TSC_hg19_v1_chr12_+_11802659 AK289441	83188	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	83289	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	83501	+	BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_006248|PRB2|653247|proline-rich protein BstNI subfamily 2##BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##K03205|PRB1|5542|proline-rich protein BstNI subfamily 1##K03206|PRB1|5542|proline-rich protein BstNI subfamily 1##BC141917|PRB1|5542|proline-rich protein BstNI subfamily 1##K03204|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_005039|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199353|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199354|PRB1|5542|proline-rich protein BstNI subfamily 1##BC130386|PRB4|5545|proline-rich protein BstNI subfamily 4##BC035362|PRB4|5545|proline-rich protein BstNI subfamily 4##K03207|PRB4|5545|proline-rich protein BstNI subfamily 4##NM_002723|PRB4|5545|proline-rich protein BstNI subfamily 4##BC128191|PRB4|5545|proline-rich protein BstNI subfamily 4##AK289441|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6	0.996926	0.0	denovo_WM_7:67:0.975
chr12	69007114	69007257	reg1008349.p1	4.864	+	TSC_hg19_v1_chr12_+_69004749 AF279894 X08004	-2405	+	AL080212 TSC_hg19_v1_chr12_+_69004740 AK311559 BC095467 AB062128 BC000176	-2460	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	-2477	+	TSC_hg19_v1_chr12_+_69080760 AJ295745 NM_020401 AK055629 AK315157 AK094183 BC017167 BC043343	73578	+	TSC_hg19_v1_chr12_+_69139955 AK289645 AY358943 NM_018656	132751	+	TSC_hg19_v1_chr12_+_69139964 AF148713 BC030504 BC021103 BC049192 BC008412 CU688882	132872	+	AF279894|RAP1B|5908|RAP1B, member of RAS oncogene family##X08004|RAP1B|5908|RAP1B, member of RAS oncogene family##AL080212|RAP1B|5908|RAP1B, member of RAS oncogene family##AK311559|RAP1B|5908|RAP1B, member of RAS oncogene family##BC095467|RAP1B|5908|RAP1B, member of RAS oncogene family##AB062128|RAP1B|5908|RAP1B, member of RAS oncogene family##BC000176|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ295745|NUP107|57122|nucleoporin 107kDa##NM_020401|NUP107|57122|nucleoporin 107kDa##AK055629|NUP107|57122|nucleoporin 107kDa##AK315157|NUP107|57122|nucleoporin 107kDa##AK094183|NUP107|57122|nucleoporin 107kDa##BC017167|NUP107|57122|nucleoporin 107kDa##BC043343|NUP107|57122|nucleoporin 107kDa##AK289645|SLC35E3|55508|solute carrier family 35, member E3##AY358943|SLC35E3|55508|solute carrier family 35, member E3##NM_018656|SLC35E3|55508|solute carrier family 35, member E3##AF148713|SLC35E3|55508|solute carrier family 35, member E3##BC030504|SLC35E3|55508|solute carrier family 35, member E3##BC021103|SLC35E3|55508|solute carrier family 35, member E3##BC049192|SLC35E3|55508|solute carrier family 35, member E3##BC008412|SLC35E3|55508|solute carrier family 35, member E3	0.998674	0.0	
chr15	75321780	75321889	reg1010466.p1	4.864	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-5853	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-5906	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-33927	+	AK128205 TSC_hg19_v1_chr15_+_75491259	169412	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	172378	+	BC110367 TSC_hg19_v1_chr15_+_75494233	172399	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.0	0.998316	CTCF.p2:-32:0.998
chr5	271077	271257	reg1008092.p1	4.864	+	TSC_hg19_v1_chr5_+_218463 AB208991 D30648 AB527409 CU674678 CU691944	-52706	+	BC001380 TSC_hg19_v1_chr5_+_218441 L21936	-52724	+	TSC_hg19_v1_chr5_+_218437 AK302524 AK295937 AK225027 AK291311	-52734	+	TSC_hg19_v1_chr5_+_271760 AK223366 AK315370 NM_013232 AK310347 AK295082 BC028242	564	+	TSC_hg19_v1_chr5_+_271772 BC012384 BC050597 BC110291 AK001917	601	+	AK308872 TSC_hg19_v1_chr5_+_271775 BC106706 U58773 DQ891163 DQ894344 BT020072	638	+	AB208991|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##D30648|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##BC001380|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##L21936|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK302524|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK295937|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK225027|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK291311|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK223366|PDCD6|10016|programmed cell death 6##AK315370|PDCD6|10016|programmed cell death 6##NM_013232|PDCD6|10016|programmed cell death 6##AK310347|PDCD6|10016|programmed cell death 6##AK295082|PDCD6|10016|programmed cell death 6##BC028242|PDCD6|10016|programmed cell death 6##BC012384|PDCD6|10016|programmed cell death 6##BC050597|PDCD6|10016|programmed cell death 6##BC110291|PDCD6|10016|programmed cell death 6##AK001917|PDCD6|10016|programmed cell death 6##AK308872|PDCD6|10016|programmed cell death 6##BC106706|PDCD6|10016|programmed cell death 6##U58773|PDCD6|10016|programmed cell death 6##DQ891163|PDCD6|10016|programmed cell death 6##DQ894344|PDCD6|10016|programmed cell death 6##BT020072|PDCD6|10016|programmed cell death 6	0.991588	0.0	
chr12	109143033	109143135	reg1010185.p2	4.863	+	TSC_hg19_v1_chr12_-_109125295 AK023205 AK223073 AK304839 AK311315 AK316065 AB030656 NM_014325	-17792	-	TSC_hg19_v1_chr12_-_109125284 BC002342 AB209909	-17804	-	TSC_hg19_v1_chr12_-_109125268 AL162070 AK297463	-17821	-	AK095421 NM_001161331	78242	-	AB072355 AB072356 TSC_hg19_v1_chr12_-_109251307	108206	-	TSC_hg19_v1_chr12_-_109251360 BC062341 NM_001161330 NM_018984	108338	-	AK023205|CORO1C|23603|coronin, actin binding protein, 1C##AK223073|CORO1C|23603|coronin, actin binding protein, 1C##AK304839|CORO1C|23603|coronin, actin binding protein, 1C##AK311315|CORO1C|23603|coronin, actin binding protein, 1C##AK316065|CORO1C|23603|coronin, actin binding protein, 1C##AB030656|CORO1C|23603|coronin, actin binding protein, 1C##NM_014325|CORO1C|23603|coronin, actin binding protein, 1C##BC002342|CORO1C|23603|coronin, actin binding protein, 1C##AB209909|CORO1C|23603|coronin, actin binding protein, 1C##AL162070|CORO1C|23603|coronin, actin binding protein, 1C##AK297463|CORO1C|23603|coronin, actin binding protein, 1C##AK095421|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_001161331|SSH1|54434|slingshot homolog 1 (Drosophila)##AB072355|SSH1|54434|slingshot homolog 1 (Drosophila)##AB072356|SSH1|54434|slingshot homolog 1 (Drosophila)##BC062341|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_001161330|SSH1|54434|slingshot homolog 1 (Drosophila)##NM_018984|SSH1|54434|slingshot homolog 1 (Drosophila)	1.575471	0.0	denovo_WM_7:-16:0.382	denovo_WM_7:-30:0.217	denovo_WM_7:-31:0.223	denovo_WM_7:-32:0.266
chr20	50847036	50847178	reg1012847.p1	4.863	+	BC012759 BC041622 NM_018197 NM_022088 NM_199426 NM_199427	-38584	-	BT009760 AB527686 BC021087 AK001744 TSC_hg19_v1_chr20_-_50808313 AK090547 BC031524 AK001596 AK222712	-38852	-	AY170621 AY170622 AY172738 BC111714 AK001666 NM_020436	-428111	-	BX640770 NM_173485	741838	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	742671	+	AK302570 NM_001193421	954714	+	BC012759|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC041622|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_018197|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_022088|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199426|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199427|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BT009760|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC021087|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK001744|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK090547|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC031524|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK001596|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK222712|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AY170621|SALL4|57167|sal-like 4 (Drosophila)##AY170622|SALL4|57167|sal-like 4 (Drosophila)##AY172738|SALL4|57167|sal-like 4 (Drosophila)##BC111714|SALL4|57167|sal-like 4 (Drosophila)##AK001666|SALL4|57167|sal-like 4 (Drosophila)##NM_020436|SALL4|57167|sal-like 4 (Drosophila)##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2	0.970739	0.0	denovo_WM_7:-27:0.955
chr2	196515263	196515443	reg1002021.p2	4.863	+	BC008973 AB017269 AY358907 AK074632 AL157430 AF179274 NM_016192 TSC_hg19_v1_chr2_-_193059657 AF242222 AK222691 AK315376	-3455724	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	-3456039	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	-3803382	-	BC029413 NM_001127257 CR749813	6222	+	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	6555	+	AB463018 AF327442 AK094515 NM_018897 AB023161	418142	-	BC008973|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB017269|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AY358907|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074632|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AL157430|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF179274|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##NM_016192|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF242222|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK222691|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK315376|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7	0.0	0.0	
chr5	52777184	52777357	reg1007499.p1	4.863	+	TSC_hg19_v1_chr5_+_52776479 AB451330 AB451474 CR541813 DQ893433 DQ896745	-720	+	TSC_hg19_v1_chr5_+_52776409 BC004107	-858	+	NM_006350 NM_013409 TSC_hg19_v1_chr5_+_52776278	-993	+	TSC_hg19_v1_chr5_+_52856468 NM_002495 BC005270	79194	+	TSC_hg19_v1_chr5_+_52856474 AF020351 AK307973 CU675075	79216	+	TSC_hg19_v1_chr5_-_53606337 CR457225 CU693132	829055	-	AB451330|FST|10468|follistatin##AB451474|FST|10468|follistatin##CR541813|FST|10468|follistatin##DQ893433|FST|10468|follistatin##DQ896745|FST|10468|follistatin##BC004107|FST|10468|follistatin##NM_006350|FST|10468|follistatin##NM_013409|FST|10468|follistatin##NM_002495|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##BC005270|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##AF020351|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##AK307973|NDUFS4|4724|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)##CR457225|ARL15|54622|ADP-ribosylation factor-like 15	0.999653	0.0	
chr1	114447780	114447928	reg1009454.p1	4.862	+	TSC_hg19_v1_chr1_-_114447651 AK314641 AF092094 NM_006594	-163	-	AB385090 CU680806 BC014146 AK093740 AX748284 AB209817 TSC_hg19_v1_chr1_-_114447534 AK298037 AK300204	-393	-	NM_001010922 TSC_hg19_v1_chr1_-_114430204 AK289439	-17668	-	TSC_hg19_v1_chr1_+_114447947 NM_022836 AF306693 CR936679 AK024060	100	+	TSC_hg19_v1_chr1_+_114448038 AF306691 BC029687	190	+	BC033012 NM_152696 NM_198268 AK122662	24142	+	AK314641|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AF092094|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##NM_006594|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##BC014146|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AK093740|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AB209817|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AK298037|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AK300204|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##NM_001010922|BCL2L15|440603|BCL2-like 15##AK289439|BCL2L15|440603|BCL2-like 15##NM_022836|DCLRE1B|64858|DNA cross-link repair 1B##AF306693|DCLRE1B|64858|DNA cross-link repair 1B##CR936679|DCLRE1B|64858|DNA cross-link repair 1B##AK024060|DCLRE1B|64858|DNA cross-link repair 1B##AF306691|DCLRE1B|64858|DNA cross-link repair 1B##BC029687|DCLRE1B|64858|DNA cross-link repair 1B##BC033012|HIPK1|204851|homeodomain interacting protein kinase 1##NM_152696|HIPK1|204851|homeodomain interacting protein kinase 1##NM_198268|HIPK1|204851|homeodomain interacting protein kinase 1##AK122662|HIPK1|204851|homeodomain interacting protein kinase 1	0.0	0.809699	CTCF.p2:30:0.810
chr11	62480176	62480304	reg1011616.p1	4.862	+	TSC_hg19_v1_chr11_-_62476984 BC009866 AK315423	-3247	-	AK311933 TSC_hg19_v1_chr11_+_62475169 BC015563	-5066	+	NM_012202 AF087900 AF092129 TSC_hg19_v1_chr11_+_62475142	-5112	+	TSC_hg19_v1_chr11_-_62494900 DQ470474 AK122942 NM_001079559	14607	-	TSC_hg19_v1_chr11_-_62494930 BC029105	14695	-	TSC_hg19_v1_chr11_+_62495969 BC032123 NM_173810 AF451992 AF451993 BC053665	15787	+	BC009866|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##AK315423|BSCL2|26580|Berardinelli-Seip congenital lipodystrophy 2 (seipin)##AK311933|GNG3|2785|guanine nucleotide binding protein (G protein), gamma 3##BC015563|GNG3|2785|guanine nucleotide binding protein (G protein), gamma 3##NM_012202|GNG3|2785|guanine nucleotide binding protein (G protein), gamma 3##AF087900|GNG3|2785|guanine nucleotide binding protein (G protein), gamma 3##AF092129|GNG3|2785|guanine nucleotide binding protein (G protein), gamma 3##DQ470474|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##AK122942|HNRNPUL2-BSCL2|100534595|HNRNPUL2-BSCL2 readthrough##NM_001079559|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##BC029105|HNRNPUL2|221092|heterogeneous nuclear ribonucleoprotein U-like 2##BC032123|TTC9C|283237|tetratricopeptide repeat domain 9C##NM_173810|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451992|TTC9C|283237|tetratricopeptide repeat domain 9C##AF451993|TTC9C|283237|tetratricopeptide repeat domain 9C##BC053665|TTC9C|283237|tetratricopeptide repeat domain 9C	0.0	0.0	
chr13	109248174	109248304	reg1009051.p1	4.862	+	DQ857728 TSC_hg19_v1_chr13_+_108955871	-292422	+	TSC_hg19_v1_chr13_+_108922564 AY129227 AY129228	-325595	+	AY129226 TSC_hg19_v1_chr13_+_108922483	-325754	+	AB020672 BC146791 NM_015011 AL834447	275	+	AB290159 AK127806 NM_001198950	33330	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	1190669	-	AY129227|TNFSF13B|10673|tumor necrosis factor (ligand) superfamily, member 13b##AY129228|TNFSF13B|10673|tumor necrosis factor (ligand) superfamily, member 13b##AY129226|TNFSF13B|10673|tumor necrosis factor (ligand) superfamily, member 13b##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2	0.999173	0.0	
chr5	179128618	179128700	reg1010833.p2	4.862	+	TSC_hg19_v1_chr5_+_179126026 M94859 L18887 L10284 AK312334 AJ271880	-2538	+	TSC_hg19_v1_chr5_+_179125995 BC003552 BC042843	-2665	+	TSC_hg19_v1_chr5_+_179125982 AK304420	-2673	+	TSC_hg19_v1_chr5_+_179132740 BC050534 AB527263 CU678492 DQ890627 DQ893794 S67659	4093	+	TSC_hg19_v1_chr5_+_179159831 D83785 NM_014757 AB209135 BC047937	31193	+	NM_145867 BC029498 U11552 AK312033 TSC_hg19_v1_chr5_+_179221016 U09353 DQ890962 DQ894134 AB590307	92373	+	M94859|CANX|821|calnexin##L18887|CANX|821|calnexin##L10284|CANX|821|calnexin##AK312334|CANX|821|calnexin##AJ271880|CANX|821|calnexin##BC003552|CANX|821|calnexin##BC042843|CANX|821|calnexin##AK304420|CANX|821|calnexin##BC050534|CANX|821|calnexin##DQ890627|CANX|821|calnexin##DQ893794|CANX|821|calnexin##D83785|MAML1|9794|mastermind-like 1 (Drosophila)##NM_014757|MAML1|9794|mastermind-like 1 (Drosophila)##AB209135|MAML1|9794|mastermind-like 1 (Drosophila)##BC047937|MAML1|9794|mastermind-like 1 (Drosophila)##NM_145867|LTC4S|4056|leukotriene C4 synthase##BC029498|LTC4S|4056|leukotriene C4 synthase##U11552|LTC4S|4056|leukotriene C4 synthase##AK312033|LTC4S|4056|leukotriene C4 synthase##U09353|LTC4S|4056|leukotriene C4 synthase##DQ890962|LTC4S|4056|leukotriene C4 synthase##DQ894134|LTC4S|4056|leukotriene C4 synthase	2.309755	0.0	denovo_WM_7:-75:0.211	denovo_WM_7:-76:0.382	denovo_WM_7:-77:0.377	denovo_WM_7:85:0.230	denovo_WM_7:100:0.221
chrX	13524865	13524972	reg1009713.p2	4.862	+	TSC_hg19_v1_chrX_-_13397507 D28370	-127413	-	AK302365 NM_001135995	-186401	-	AB050195 TSC_hg19_v1_chrX_-_13338140 BC137186 BC137187	-186780	-	NM_001167890 NM_015507 AK075214 AK300236 AJ245671 AF193055 AF186084 AK300137 AK315018 AY358333 BC038587 AL117610 CU691592 DQ890938	62918	+	AK291271 AK315599 NM_152634 AK294465	146348	+	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	182323	+	AK302365|ATXN3L|92552|ataxin 3-like##NM_001135995|ATXN3L|92552|ataxin 3-like##AB050195|ATXN3L|92552|ataxin 3-like##BC137186|ATXN3L|92552|ataxin 3-like##BC137187|ATXN3L|92552|ataxin 3-like##NM_001167890|EGFL6|25975|EGF-like-domain, multiple 6##NM_015507|EGFL6|25975|EGF-like-domain, multiple 6##AK075214|EGFL6|25975|EGF-like-domain, multiple 6##AK300236|EGFL6|25975|EGF-like-domain, multiple 6##AJ245671|EGFL6|25975|EGF-like-domain, multiple 6##AF193055|EGFL6|25975|EGF-like-domain, multiple 6##AF186084|EGFL6|25975|EGF-like-domain, multiple 6##AK300137|EGFL6|25975|EGF-like-domain, multiple 6##AK315018|EGFL6|25975|EGF-like-domain, multiple 6##AY358333|EGFL6|25975|EGF-like-domain, multiple 6##BC038587|EGFL6|25975|EGF-like-domain, multiple 6##AL117610|EGFL6|25975|EGF-like-domain, multiple 6##DQ890938|EGFL6|25975|EGF-like-domain, multiple 6##AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family	0.0	0.935893	CTCF.p2:-23:0.936
chrX	1447331	1447511	reg1002157.p2	4.862	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-45838	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-59707	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-115837	-	BC035407 NM_002183	8087	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	63548	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	124380	-	NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like	2.988999	0.0	denovo_WM_7:13:0.574	denovo_WM_7:16:0.263	denovo_WM_7:-56:0.768	denovo_WM_7:85:0.793
chr17	65809752	65809888	reg1010297.p1	4.861	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	-95770	+	BC007905 NM_012417 NM_181671	-435897	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-436232	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	11882	+	AK293224 TSC_hg19_v1_chr17_+_65822221	12397	+	TSC_hg19_v1_chr17_+_65822242 AY282495	12429	+	BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor##AY282495|BPTF|2186|bromodomain PHD finger transcription factor	0.420696	0.0	denovo_WM_7:14:0.261
chr19	40250528	40250650	reg1009502.p1	4.861	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-21950	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-55546	+	FJ613352 NM_001190441	-104044	+	NM_001143832	16644	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	74209	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	80702	-	FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613352|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001190441|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001143832|LEUTX|342900|leucine twenty homeobox##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin	0.0	0.0	
chr2	9748334	9748478	reg1011623.p2	4.861	+	TSC_hg19_v1_chr2_-_9695885 U86755 U92649 BC062687 GQ402545 NM_003183 BC146658	-52487	-	TSC_hg19_v1_chr2_-_9695883 AK289829	-52523	-	TSC_hg19_v1_chr2_-_9695874 U69611 U69612	-52556	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	22207	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	22643	-	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	22719	-	U86755|ADAM17|6868|ADAM metallopeptidase domain 17##U92649|ADAM17|6868|ADAM metallopeptidase domain 17##BC062687|ADAM17|6868|ADAM metallopeptidase domain 17##GQ402545|ADAM17|6868|ADAM metallopeptidase domain 17##NM_003183|ADAM17|6868|ADAM metallopeptidase domain 17##BC146658|ADAM17|6868|ADAM metallopeptidase domain 17##AK289829|ADAM17|6868|ADAM metallopeptidase domain 17##U69611|ADAM17|6868|ADAM metallopeptidase domain 17##U69612|ADAM17|6868|ADAM metallopeptidase domain 17##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	0.182593	0.0	
chr7	124850762	124850894	reg1008110.p1	4.861	+	NM_001042594 NM_015450	-280792	-	BC130600 BC130604 NM_001024603	-420026	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-445032	-	NM_000845	2032740	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	2041537	-	TSC_hg19_v1_chr7_-_126893165 AK290197	2042324	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	2.734502	0.0	denovo_WM_7:3:0.457	denovo_WM_7:4:0.457	denovo_WM_7:82:0.584	denovo_WM_7:-86:0.247	denovo_WM_7:88:0.301
chr11	12850121	12850301	reg1011372.p2	4.860	+	TSC_hg19_v1_chr11_+_12695982 NM_021961	-154248	+	TSC_hg19_v1_chr11_+_12399158 NM_018222 AK098504 AF237771 AK022316 BC016713 AK001655 BC014535 AB464001 EU832601 CU677039 CU677693 AF325830	-451102	+	AK123671 NM_032867	-541765	+	TSC_hg19_v1_chr11_+_12960793 AK075236	110600	+	TSC_hg19_v1_chr11_+_13030883 NM_001080521	180713	+	TSC_hg19_v1_chr11_+_13299288 NM_001030272 NM_001030273 NM_001178	449081	+	NM_021961|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)##NM_018222|PARVA|55742|parvin, alpha##AK098504|PARVA|55742|parvin, alpha##AF237771|PARVA|55742|parvin, alpha##AK022316|PARVA|55742|parvin, alpha##BC016713|PARVA|55742|parvin, alpha##AK001655|PARVA|55742|parvin, alpha##BC014535|PARVA|55742|parvin, alpha##EU832601|PARVA|55742|parvin, alpha##AF325830|PARVA|55742|parvin, alpha##AK123671|MICALCL|84953|MICAL C-terminal like##NM_032867|MICALCL|84953|MICAL C-terminal like##AK075236|TEAD1|7003|TEA domain family member 1 (SV40 transcriptional enhancer factor)##NM_001080521|RASSF10|644943|Ras association (RalGDS/AF-6) domain family (N-terminal) member 10##NM_001030272|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_001030273|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##NM_001178|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like	1.994708	0.0	denovo_WM_7:-1:0.928	denovo_WM_7:22:0.880
chr12	76380168	76380348	reg1010076.p1	4.860	+	BC005225 TSC_hg19_v1_chr12_-_75905414 NM_007043	-474839	-	BC033887 TSC_hg19_v1_chr12_-_75905393 BC014034 BC026107	-474863	-	AK022133 TSC_hg19_v1_chr12_-_75905382 BC016778 U55766	-474873	-	AF220656 TSC_hg19_v1_chr12_-_76424608	44289	-	TSC_hg19_v1_chr12_-_76425369 BC126425 BC130427 BC110820 U92983 BC018929	45032	-	TSC_hg19_v1_chr12_-_76425376 AK304224 AB587598 NM_007350 Z50194	45269	-	BC005225|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##NM_007043|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC033887|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC014034|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC026107|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AK022133|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##BC016778|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##U55766|KRR1|11103|KRR1, small subunit (SSU) processome component, homolog (yeast)##AF220656|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC126425|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC130427|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC110820|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##U92983|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##BC018929|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##AK304224|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##NM_007350|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1##Z50194|PHLDA1|22822|pleckstrin homology-like domain, family A, member 1	0.358981	0.0	denovo_WM_7:-36:0.346
chr17	26424922	26425055	reg1009552.p1	4.860	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-54987	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-55335	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-204597	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	221205	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	237498	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	237715	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.1827	0.0	
chr20	57461675	57461828	reg1011750.p1	4.860	+	NM_001077490 NM_080425	-33716	+	AJ251759 TSC_hg19_v1_chr20_-_57425958	-35794	-	AF105253 NM_016592 TSC_hg19_v1_chr20_+_57414802	-46953	+	TSC_hg19_v1_chr20_+_57464205 X56009	2443	+	TSC_hg19_v1_chr20_+_57466445 NM_000516 NM_001077488 NM_001077489 NM_080426 AK026564 AK225818 BC008855 BC089157	4606	+	TSC_hg19_v1_chr20_+_57466632 BC108315 BC002722 BC104928 X04408	4863	+	NM_001077490|GNAS|2778|GNAS complex locus##NM_080425|GNAS|2778|GNAS complex locus##AJ251759|GNAS-AS1|149775|GNAS antisense RNA 1 (non-protein coding)##AF105253|GNAS|2778|GNAS complex locus##NM_016592|GNAS|2778|GNAS complex locus##X56009|GNAS|2778|GNAS complex locus##NM_000516|GNAS|2778|GNAS complex locus##NM_001077488|GNAS|2778|GNAS complex locus##NM_001077489|GNAS|2778|GNAS complex locus##NM_080426|GNAS|2778|GNAS complex locus##AK026564|GNAS|2778|GNAS complex locus##AK225818|GNAS|2778|GNAS complex locus##BC008855|GNAS|2778|GNAS complex locus##BC089157|GNAS|2778|GNAS complex locus##BC108315|GNAS|2778|GNAS complex locus##BC002722|GNAS|2778|GNAS complex locus##BC104928|GNAS|2778|GNAS complex locus##X04408|GNAS|2778|GNAS complex locus	0.273577	0.0	
chr2	182175827	182176007	reg1009101.p1	4.860	+	TSC_hg19_v1_chr2_+_181845809 AK314145	-330090	+	AF085362 BC003554 AB017644 TSC_hg19_v1_chr2_+_181845681	-330274	+	TSC_hg19_v1_chr2_+_181845369 BC092407	-330547	+	NM_000885	145701	+	BC055419 AJ504733 AJ508356 L12002 TSC_hg19_v1_chr2_+_182322149 AK303478 BC016671	146133	+	TSC_hg19_v1_chr2_+_182322277 X16983 AB527164	146405	+	AK314145|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AF085362|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC003554|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AB017644|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC092407|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##NM_000885|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC055419|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ504733|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ508356|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##L12002|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AK303478|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC016671|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##X16983|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	1.280466	0.0	denovo_WM_7:-96:0.249
chr8	82019256	82019355	reg1007147.p2	4.860	+	AK131274 NM_001033723	-232290	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-620821	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-935535	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	5009	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	173468	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	340364	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.099466	0.0	
chr1	236051222	236051402	reg1003507.p1	4.859	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-21068	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-21129	-	BC022485 NM_001098721 NM_004485	-237259	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	177065	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	177113	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	177166	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	1.395068	0.0	denovo_WM_7:89:0.223
chr12	89960539	89960657	reg1009274.p1	4.859	+	AK297677 NM_001199781 NM_001199782 NM_172240	-40560	-	CU693124 TSC_hg19_v1_chr12_-_89919778 BX647258 AK074772 AK295596 BC026080 EF011619	-40838	-	TSC_hg19_v1_chr12_-_89919208 AK123106 NM_001199777	-41336	-	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	89253	-	TSC_hg19_v1_chr12_+_90102640 BC040326	142089	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	142947	+	AK297677|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199781|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199782|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_172240|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BX647258|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##AK074772|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK295596|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BC026080|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##EF011619|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK123106|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##NM_001199777|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC040326|LOC338758|338758|uncharacterized LOC338758##BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758	0.0	0.0	
chr16	21145463	21145573	reg1007982.p1	4.859	+	TSC_hg19_v1_chr16_+_20912407 BC017039	-233110	+	AK311415 NM_001128301 NM_001128302 TSC_hg19_v1_chr16_+_20912121 AK311881	-233397	+	BX648998 NM_173475 TSC_hg19_v1_chr16_-_20911681 BC040442 BX648185	-233868	-	NM_020422 TSC_hg19_v1_chr16_+_21169994 AK074667 AK293557 BC015812	24464	+	AF494040 NM_017539	25243	-	BC096304 BC096305 BC096306 BC096307 M90366 NM_003460 AK313003 AK293805 AK308820	77362	-	BC017039|LYRM1|57149|LYR motif containing 1##AK311415|LYRM1|57149|LYR motif containing 1##NM_001128301|LYRM1|57149|LYR motif containing 1##NM_001128302|LYRM1|57149|LYR motif containing 1##AK311881|LYRM1|57149|LYR motif containing 1##BX648998|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##NM_173475|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##BC040442|DCUN1D3|123879|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)##NM_020422|TMEM159|57146|transmembrane protein 159##AK074667|TMEM159|57146|transmembrane protein 159##AK293557|TMEM159|57146|transmembrane protein 159##BC015812|TMEM159|57146|transmembrane protein 159##AF494040|DNAH3|55567|dynein, axonemal, heavy chain 3##NM_017539|DNAH3|55567|dynein, axonemal, heavy chain 3##BC096304|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##BC096305|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##BC096306|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##BC096307|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##M90366|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##NM_003460|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##AK313003|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##AK293805|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)##AK308820|ZP2|7783|zona pellucida glycoprotein 2 (sperm receptor)	0.777044	0.0	denovo_WM_7:-54:0.626
chr3	152878701	152878819	reg1009601.p1	4.859	+	NM_002563 Z49205	-326025	+	AY358260 NM_001123228	-819982	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-861567	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	1266	+	TSC_hg19_v1_chr3_+_152880058 BC012362	1288	+	AF086445 NM_001101337	323523	+	NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family##AF086445|C3orf79|152118|chromosome 3 open reading frame 79##NM_001101337|C3orf79|152118|chromosome 3 open reading frame 79	0.0	0.0	
chr5	169194085	169194244	reg1012292.p2	4.859	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-129864	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-129920	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-183443	+	AK055998 NM_001129891	213579	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	338807	+	BC030767 NM_001102609 BC092511	465832	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.0	0.0	
chr1	181474411	181474584	reg1010092.p1	4.858	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	-21797	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-416632	+	NM_016545	-416860	+	BC137223 BC137224 AK128654 NM_001009992	556300	-	TSC_hg19_v1_chr1_-_182354649 AK301600	880185	-	TSC_hg19_v1_chr1_-_182357758 BC127883	883266	-	NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase##BC127883|GLUL|2752|glutamate-ammonia ligase	0.976389	0.0	denovo_WM_7:12:0.698
chr2	113484381	113484510	reg1011525.p2	4.858	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-80925	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-142256	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	-142407	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	37777	-	NM_000575 BC035169	58527	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	109899	-	NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta	0.0	0.999154	CTCF.p2:33:0.999
chr2	131528687	131528841	reg1010305.p2	4.858	+	TSC_hg19_v1_chr2_+_131513793 NM_001105194 NM_001105195	-14942	+	AK289525 NM_152698 AK095696 AK291424 BC113445 BC113447 BC143806 NM_001105193	-15649	+	BC105013 BC105041 NM_207364 AY569570 AY280965	-42081	+	AF249745 NM_015320 NM_032995	145459	+	TSC_hg19_v1_chr2_-_131851008 BC066347 BC110642 NM_001009993	322234	-	AK126289 NM_001100623 NM_017958	333655	+	NM_001105194|FAM123C|205147|family with sequence similarity 123C##NM_001105195|FAM123C|205147|family with sequence similarity 123C##AK289525|FAM123C|205147|family with sequence similarity 123C##NM_152698|FAM123C|205147|family with sequence similarity 123C##AK095696|FAM123C|205147|family with sequence similarity 123C##AK291424|FAM123C|205147|family with sequence similarity 123C##BC113445|FAM123C|205147|family with sequence similarity 123C##BC113447|FAM123C|205147|family with sequence similarity 123C##BC143806|FAM123C|205147|family with sequence similarity 123C##NM_001105193|FAM123C|205147|family with sequence similarity 123C##BC105013|GPR148|344561|G protein-coupled receptor 148##BC105041|GPR148|344561|G protein-coupled receptor 148##NM_207364|GPR148|344561|G protein-coupled receptor 148##AY569570|GPR148|344561|G protein-coupled receptor 148##AY280965|GPR148|344561|G protein-coupled receptor 148##AF249745|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_015320|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_032995|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##BC066347|FAM168B|130074|family with sequence similarity 168, member B##BC110642|FAM168B|130074|family with sequence similarity 168, member B##NM_001009993|FAM168B|130074|family with sequence similarity 168, member B##AK126289|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_001100623|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_017958|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2	0.999361	0.0	denovo_WM_7:-48:0.841
chr3	98458190	98458299	reg1011541.p2	4.858	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	-6657	+	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	-6999	+	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	-145825	-	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	162248	-	AK311449 NM_001850 NM_020351 AF170702 BC013581	899206	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	1078501	+	AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26	0.868808	0.0	denovo_WM_7:-8:0.643
chr12	8124910	8125089	reg1010304.p1	4.857	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-36233	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-81231	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-99533	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	60491	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	93954	-	TSC_hg19_v1_chr12_-_8219032 U62027	94017	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.635495	0.0	denovo_WM_7:-62:0.635
chr18	9116966	9117067	reg1010234.p1	4.857	+	TSC_hg19_v1_chr18_+_9102715 AK312129 BC001632 BC017487 M22538 AK291865 AB590136 BC071689 DQ892593 DQ895813 CR456928	-14296	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	-14394	+	AB384528 TSC_hg19_v1_chr18_+_8718600	-398492	+	TSC_hg19_v1_chr18_+_9136811 NM_001083625 NM_015208 BC070234 AK024808 AY373757 BC057225 AL834204	19775	+	AY533564 NM_001204056	20544	+	TSC_hg19_v1_chr18_+_9334800 AK027629 AK075550 NM_020648 AF196834 AJ297391	217774	+	AK312129|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC001632|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC017487|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##M22538|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##AK291865|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##BC071689|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##DQ892593|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##DQ895813|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##CR456928|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa##NM_001083625|ANKRD12|23253|ankyrin repeat domain 12##NM_015208|ANKRD12|23253|ankyrin repeat domain 12##BC070234|ANKRD12|23253|ankyrin repeat domain 12##AK024808|ANKRD12|23253|ankyrin repeat domain 12##AY373757|ANKRD12|23253|ankyrin repeat domain 12##BC057225|ANKRD12|23253|ankyrin repeat domain 12##AL834204|ANKRD12|23253|ankyrin repeat domain 12##AY533564|ANKRD12|23253|ankyrin repeat domain 12##NM_001204056|ANKRD12|23253|ankyrin repeat domain 12##AK027629|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AK075550|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##NM_020648|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AF196834|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)##AJ297391|TWSG1|57045|twisted gastrulation homolog 1 (Drosophila)	0.998337	0.0	denovo_WM_7:28:0.457	denovo_WM_7:29:0.457
chr5	172337444	172337544	reg1009529.p1	4.857	+	TSC_hg19_v1_chr5_+_172261253 NM_001031711 AB033007 BC012766 BC014490 AB463606	-76176	+	TSC_hg19_v1_chr5_-_172198199 X68277 AK300487 AK298047 AK298658 AK304475 AK316321 BC022463 NM_004417 AK299391	-139283	-	AF275799 TSC_hg19_v1_chr5_-_172083715	-253851	-	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	48954	+	NM_003945 TSC_hg19_v1_chr5_+_172410801 BC119715 BC119714 AK312068 Y15286	73288	+	TSC_hg19_v1_chr5_+_172410833 CR456856 CR542131	73350	+	NM_001031711|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##AB033007|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC012766|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC014490|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##X68277|DUSP1|1843|dual specificity phosphatase 1##AK300487|DUSP1|1843|dual specificity phosphatase 1##AK298047|DUSP1|1843|dual specificity phosphatase 1##AK298658|DUSP1|1843|dual specificity phosphatase 1##AK304475|DUSP1|1843|dual specificity phosphatase 1##AK316321|DUSP1|1843|dual specificity phosphatase 1##BC022463|DUSP1|1843|dual specificity phosphatase 1##NM_004417|DUSP1|1843|dual specificity phosphatase 1##AK299391|DUSP1|1843|dual specificity phosphatase 1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1##NM_003945|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119715|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##BC119714|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##AK312068|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##Y15286|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR456856|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1##CR542131|ATP6V0E1|8992|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1	0.994291	0.0	
chr6	108670221	108670321	reg1001159.p2	4.857	+	TSC_hg19_v1_chr6_+_108616194 AF520418 BC018445 NM_145315	-54132	+	TSC_hg19_v1_chr6_-_108582316 NM_003795 NM_152827	-87886	-	TSC_hg19_v1_chr6_-_108582245 BC015179 BC014580 AK289476	-88033	-	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	210752	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	211804	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	211986	+	AF520418|LACE1|246269|lactation elevated 1##BC018445|LACE1|246269|lactation elevated 1##NM_145315|LACE1|246269|lactation elevated 1##NM_003795|SNX3|8724|sorting nexin 3##NM_152827|SNX3|8724|sorting nexin 3##BC015179|SNX3|8724|sorting nexin 3##BC014580|SNX3|8724|sorting nexin 3##AK289476|SNX3|8724|sorting nexin 3##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3	0.0	0.0	
chr11	120529235	120529415	reg1008732.p2	4.856	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-146860	+	BC063117 NM_001198665 NM_015313	-321708	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	-322221	+	AB384776 NM_014619 S67803	1702	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	365485	+	NM_005422	444049	+	AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_005422|TECTA|7007|tectorin alpha	0.0	0.0	
chr14	76670203	76670328	reg1009376.p2	4.856	+	AK000696 TSC_hg19_v1_chr14_+_76618289	-51959	+	TSC_hg19_v1_chr14_+_76618279 AB032978	-51988	+	TSC_hg19_v1_chr14_+_76618258 NM_017926 NM_017972 BC058032	-52009	+	NM_004452	167424	+	TSC_hg19_v1_chr14_+_77227817 AK094330	557535	+	TSC_hg19_v1_chr14_+_77228562 NM_014909 AL832588 BC009031 AB028959	558190	+	AK000696|C14orf118|55668|chromosome 14 open reading frame 118##AB032978|C14orf118|55668|chromosome 14 open reading frame 118##NM_017926|C14orf118|55668|chromosome 14 open reading frame 118##NM_017972|C14orf118|55668|chromosome 14 open reading frame 118##BC058032|C14orf118|55668|chromosome 14 open reading frame 118##NM_004452|ESRRB|2103|estrogen-related receptor beta##NM_014909|VASH1|22846|vasohibin 1##AL832588|VASH1|22846|vasohibin 1##BC009031|VASH1|22846|vasohibin 1##AB028959|VASH1|22846|vasohibin 1	0.0	0.0	
chr15	96047200	96047351	reg1010196.p2	4.856	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-176956	-	NM_001159644 BC025708 BC111024 AK002037	-1147966	+	NM_001159643 NM_018349 AY656717 BC131527	-1205814	+	BC106083 NM_001145155 FM208183	821886	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	826702	+	AK316086 NM_001145156	828518	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.995266	0.0	denovo_WM_7:31:0.995
chr16	21372470	21372564	reg1012495.p1	4.856	+	BX648477 NM_001014444 NM_001888	-58130	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-82869	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-82924	-	BC036263 NM_130464	64140	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	159235	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	238373	+	BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9	0.978	0.0	denovo_WM_7:-5:0.765
chr5	177558553	177558733	reg1009154.p2	4.856	+	TSC_hg19_v1_chr5_+_177558026 BC009911 DQ494789 NM_022762	-611	+	TSC_hg19_v1_chr5_+_177558014 AK093481 AK094065 AX748156 AX748436 AK125337	-632	+	TSC_hg19_v1_chr5_+_177540665 BC053323 NM_015111	-18015	+	CR457238 AF401219 TSC_hg19_v1_chr5_-_177580868 AK000486 BC000009 AF161404 AJ293309 BC006387	22214	-	TSC_hg19_v1_chr5_-_177580916 NM_001034833 NM_017838	22293	-	TSC_hg19_v1_chr5_+_177631530 AK097657 NM_004499 NM_031266	72871	+	BC009911|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##DQ494789|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##NM_022762|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK093481|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK094065|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK125337|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##BC053323|N4BP3|23138|NEDD4 binding protein 3##NM_015111|N4BP3|23138|NEDD4 binding protein 3##CR457238|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF401219|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AK000486|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC000009|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF161404|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AJ293309|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC006387|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##NM_001034833|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##NM_017838|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AK097657|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_004499|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B##NM_031266|HNRNPAB|3182|heterogeneous nuclear ribonucleoprotein A/B	0.999708	0.0	denovo_WM_7:-59:0.457	denovo_WM_7:-60:0.457
chr6_cox_hap2	4724485	4724640	reg1008786.p1	4.856	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997076	0.0	denovo_WM_7:48:0.440
chr11	107438671	107438851	reg1012133.p1	4.855	+	AK293603 TSC_hg19_v1_chr11_-_107436464 BC015183 AK304413 AB218768 AK095523 NM_138775	-2317	-	AK293001 TSC_hg19_v1_chr11_-_107328552 BX649022 BX647832 BC107418 BC070142 BX648704 AK126881 NM_152434	-110222	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	-549673	-	TSC_hg19_v1_chr11_+_107461813 AK297351 NM_001130037 NM_018712	23050	+	TSC_hg19_v1_chr11_+_107461998 AK303689 AK054794	23224	+	TSC_hg19_v1_chr11_+_107462073 BC028725	23315	+	AK293603|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##BC015183|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK304413|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AB218768|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK095523|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##NM_138775|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK293001|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX649022|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX647832|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC107418|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC070142|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX648704|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##AK126881|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##NM_152434|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##AK297351|ELMOD1|55531|ELMO/CED-12 domain containing 1##NM_001130037|ELMOD1|55531|ELMO/CED-12 domain containing 1##NM_018712|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK303689|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK054794|ELMOD1|55531|ELMO/CED-12 domain containing 1##BC028725|ELMOD1|55531|ELMO/CED-12 domain containing 1	0.987519	0.0	denovo_WM_7:-4:0.686	denovo_WM_7:-6:0.214
chr11	128172842	128172950	reg1000908.p2	4.855	+	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1299591	+	TSC_hg19_v1_chr11_-_126870685 AY358743 NM_001161707 NM_032531	-1302171	-	AB058770 BC071838 TSC_hg19_v1_chr11_-_126870667	-1302236	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	219067	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	219238	-	BX640634 NM_001143820	284556	-	BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##AY358743|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_001161707|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##NM_032531|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AB058770|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##BC071838|KIRREL3|84623|kin of IRRE like 3 (Drosophila)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)	0.058201	0.0	
chr19	11431361	11431519	reg1011241.p2	4.855	+	AF133424 NM_012466 BC029908	-24607	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-58302	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-81144	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	18860	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	25493	-	TSC_hg19_v1_chr19_+_11457194 NM_001080503 AK301653 AK316339 AK303641	25752	+	NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205##NM_001080503|CCDC159|126075|coiled-coil domain containing 159##AK301653|CCDC159|126075|coiled-coil domain containing 159##AK316339|CCDC159|126075|coiled-coil domain containing 159##AK303641|CCDC159|126075|coiled-coil domain containing 159	1.945918	0.0	denovo_WM_7:-62:0.807	denovo_WM_7:-82:0.666
chr19	6942937	6943059	reg1010239.p1	4.855	+	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	-55401	+	TSC_hg19_v1_chr19_+_6772811 AB590871	-170190	+	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	-170274	+	NM_001136507	87595	+	NM_001164419	97185	-	AF503919 NM_144614	106351	+	BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##NM_001136507|MBD3L5|284428|methyl-CpG binding domain protein 3-like 5##NM_001164419|MBD3L4|653656|methyl-CpG binding domain protein 3-like 4##AF503919|MBD3L2|125997|methyl-CpG binding domain protein 3-like 2##NM_144614|MBD3L2|125997|methyl-CpG binding domain protein 3-like 2	0.0	0.047191	
chr4	86528780	86528931	reg1010909.p1	4.855	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-132512	+	NM_014991	-641312	-	NM_001263 U65887	-1024762	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	170993	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	171043	+	AK307423 TSC_hg19_v1_chr4_+_86749064	220199	+	NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24	1.227176	0.0	denovo_WM_7:-10:0.474	denovo_WM_7:-11:0.360
chr5	176421483	176421630	reg1007838.p1	4.855	+	U51333 BC028129 NM_002115	-95233	-	TSC_hg19_v1_chr5_+_176237521 AK131380 NM_133369 BC157824	-184001	+	TSC_hg19_v1_chr5_+_176074497 AK024427 BC067105 BC010405 AF174603 CU679699 CU688248	-347004	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	12032	-	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	28163	+	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	92326	+	U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##AK131380|UNC5A|90249|unc-5 homolog A (C. elegans)##NM_133369|UNC5A|90249|unc-5 homolog A (C. elegans)##BC157824|UNC5A|90249|unc-5 homolog A (C. elegans)##AK024427|TSPAN17|26262|tetraspanin 17##BC067105|TSPAN17|26262|tetraspanin 17##BC010405|TSPAN17|26262|tetraspanin 17##AF174603|TSPAN17|26262|tetraspanin 17##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4	0.999843	0.0	
chr6_qbl_hap6	3414460	3414577	reg1010042.p1	4.855	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.008085	0.0	denovo_WM_7:-19:0.621	denovo_WM_7:-20:0.297
chr14	58763189	58763362	reg1011601.p1	4.854	+	TSC_hg19_v1_chr14_+_58711605 BC038990 D00762 DQ892645 DQ895883 AB464085 BT006711 BT019715 CR456933 CU688640	-51645	+	TSC_hg19_v1_chr14_+_58711570 AK315158 BC029402 BC005265	-51701	+	TSC_hg19_v1_chr14_+_58711551 NM_002788 NM_152132	-51770	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	1558	-	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	1966	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	2043	+	BC038990|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##D00762|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ892645|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ895883|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT006711|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT019715|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##CR456933|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK315158|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC029402|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC005265|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_002788|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_152132|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)	0.994276	0.0	
chr2	138993764	138993944	reg1013675.p1	4.854	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	-271920	+	NM_001080427	-1245393	+	TSC_hg19_v1_chr2_+_137523114 AK299929	-1470738	+	NM_001001664 BC071613 TSC_hg19_v1_chr2_+_139259435	265539	+	TSC_hg19_v1_chr2_+_139259500 AK021919	265636	+	AF043467 AB162675 BC101461 BC101462 BC101463 BC104741 NM_007226	543952	-	NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001001664|SPOPL|339745|speckle-type POZ protein-like##BC071613|SPOPL|339745|speckle-type POZ protein-like##AF043467|NXPH2|11249|neurexophilin 2##AB162675|NXPH2|11249|neurexophilin 2##BC101461|NXPH2|11249|neurexophilin 2##BC101462|NXPH2|11249|neurexophilin 2##BC101463|NXPH2|11249|neurexophilin 2##BC104741|NXPH2|11249|neurexophilin 2##NM_007226|NXPH2|11249|neurexophilin 2	0.0	0.0	
chr17	74586041	74586216	reg1010576.p1	4.853	+	NM_006456 TSC_hg19_v1_chr17_-_74582222	-3941	-	TSC_hg19_v1_chr17_-_74581934 AK225943	-4187	-	TSC_hg19_v1_chr17_-_74581928 BT019972 BC040455 AJ251053 U14550	-4223	-	AY096001 CU692632 BC022462 TSC_hg19_v1_chr17_-_74639807 AK310906 AY358918 BC063830 NM_018414	53678	-	TSC_hg19_v1_chr17_-_74707048 AB590448 NM_001008528 NM_001008529 NM_198530 BC094776	120904	-	TSC_hg19_v1_chr17_-_74707067 BC053983	120972	-	NM_006456|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##AK225943|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##BT019972|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##BC040455|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##AJ251053|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##U14550|ST6GALNAC2|10610|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2##AY096001|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##BC022462|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##AK310906|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##AY358918|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##BC063830|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##NM_018414|ST6GALNAC1|55808|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1##NM_001008528|MXRA7|439921|matrix-remodelling associated 7##NM_001008529|MXRA7|439921|matrix-remodelling associated 7##NM_198530|MXRA7|439921|matrix-remodelling associated 7##BC094776|MXRA7|439921|matrix-remodelling associated 7##BC053983|MXRA7|439921|matrix-remodelling associated 7	3.437377	0.0	denovo_WM_7:-4:0.264	denovo_WM_7:-8:0.546	denovo_WM_7:-24:0.276	denovo_WM_7:101:0.732
chr5	137804263	137804443	reg1011678.p1	4.853	+	TSC_hg19_v1_chr5_+_137801192 NM_001964 X52541 BC073983 M62829 M80583 BC041701 CU687282 AB591041 EU832310 EU832395	-3039	+	TSC_hg19_v1_chr5_+_137801167 AK298101 AK301065	-3182	+	AY562240 TSC_hg19_v1_chr5_+_137774899 AF251041	-29447	+	TSC_hg19_v1_chr5_-_137848536 X80916	44200	-	TSC_hg19_v1_chr5_-_137854498 BT007374 DQ890706 DQ893890	50171	-	TSC_hg19_v1_chr5_-_137878826 M75715	74464	-	NM_001964|EGR1|1958|early growth response 1##X52541|EGR1|1958|early growth response 1##BC073983|EGR1|1958|early growth response 1##M62829|EGR1|1958|early growth response 1##M80583|EGR1|1958|early growth response 1##BC041701|EGR1|1958|early growth response 1##EU832310|EGR1|1958|early growth response 1##EU832395|EGR1|1958|early growth response 1##AK298101|EGR1|1958|early growth response 1##AK301065|EGR1|1958|early growth response 1##AY562240|REEP2|51308|receptor accessory protein 2##AF251041|REEP2|51308|receptor accessory protein 2##X80916|ETF1|2107|eukaryotic translation termination factor 1##BT007374|ETF1|2107|eukaryotic translation termination factor 1##DQ890706|ETF1|2107|eukaryotic translation termination factor 1##DQ893890|ETF1|2107|eukaryotic translation termination factor 1##M75715|ETF1|2107|eukaryotic translation termination factor 1	0.987799	0.0	denovo_WM_7:-68:0.878
chr10	7562480	7562559	reg1005562.p1	4.852	+	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	-109085	-	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-111269	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-940039	+	AK027849 TSC_hg19_v1_chr10_-_7659249	96698	-	BC004282 NM_032817	99105	-	AK027831 AB075833 TSC_hg19_v1_chr10_-_7682819	120261	-	BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AK027831|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AB075833|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	1.925974	0.0	denovo_WM_7:-3:0.878	denovo_WM_7:-20:0.297	denovo_WM_7:-21:0.301	denovo_WM_7:-22:0.335
chr12	7741464	7741582	reg1014454.p1	4.852	+	DQ058615 TSC_hg19_v1_chr12_-_7656374 BC051281 AK226017 Z22968 Z22969 Z22970 Z22971 NM_004244 NM_203416	-85173	-	GQ397482 AY358856 AK303372 AF264014 NM_174941 BC104962 BC104964	-144786	-	NM_001080454	-284596	+	U72890 L25877 U72891 BC101405 BC101404 BC101972 BC096158 BC096159 BC096160 BC096161 BC101973 BC144708 NM_001644	76961	-	CU689052 DQ892661 DQ895901 AF110641 AF263538 NM_020634 BC030959 AY358875	106833	-	AY317075 NM_199286 BC125145	122550	+	DQ058615|CD163|9332|CD163 molecule##BC051281|CD163|9332|CD163 molecule##AK226017|CD163|9332|CD163 molecule##Z22968|CD163|9332|CD163 molecule##Z22969|CD163|9332|CD163 molecule##Z22970|CD163|9332|CD163 molecule##Z22971|CD163|9332|CD163 molecule##NM_004244|CD163|9332|CD163 molecule##NM_203416|CD163|9332|CD163 molecule##GQ397482|CD163L1|283316|CD163 molecule-like 1##AK303372|CD163L1|283316|CD163 molecule-like 1##AF264014|CD163L1|283316|CD163 molecule-like 1##NM_174941|CD163L1|283316|CD163 molecule-like 1##BC104962|CD163L1|283316|CD163 molecule-like 1##BC104964|CD163L1|283316|CD163 molecule-like 1##NM_001080454|ACSM4|341392|acyl-CoA synthetase medium-chain family member 4##U72890|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##L25877|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##U72891|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC101405|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC101404|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC101972|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC096158|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC096159|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC096160|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC096161|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC101973|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##BC144708|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##NM_001644|APOBEC1|339|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1##DQ892661|GDF3|9573|growth differentiation factor 3##DQ895901|GDF3|9573|growth differentiation factor 3##AF110641|GDF3|9573|growth differentiation factor 3##AF263538|GDF3|9573|growth differentiation factor 3##NM_020634|GDF3|9573|growth differentiation factor 3##BC030959|GDF3|9573|growth differentiation factor 3##AY358875|GDF3|9573|growth differentiation factor 3##AY317075|DPPA3|359787|developmental pluripotency associated 3##NM_199286|DPPA3|359787|developmental pluripotency associated 3##BC125145|STELLAR|400206|developmental pluripotency associated 3 pseudogene	0.0	0.309821	CTCF.p2:0:0.310
chr13	59551279	59551427	reg1011283.p1	4.852	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-1343457	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-1345406	+	NM_001040429	-1345565	+	BC041395 TSC_hg19_v1_chr13_-_60325215	773791	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	1035967	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	1186628	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	1.973669	0.0	denovo_WM_7:-30:0.520	denovo_WM_7:-35:0.307	denovo_WM_7:-51:0.214	denovo_WM_7:-52:0.249
chr14	103566929	103567109	reg1003777.p1	4.852	+	BC113655 BC117375 NM_001077594 HQ258590	-501	+	BC047871 BC048261 TSC_hg19_v1_chr14_-_103523736 AB032950 BC155541 NM_006035 BC078666 AF128625	-43282	-	AB384568 TSC_hg19_v1_chr14_-_103523568	-43478	-	TSC_hg19_v1_chr14_+_103589771 BC017818	22726	+	M92357 NM_006291 BC128449 BC128450 TSC_hg19_v1_chr14_+_103592873	25749	+	NM_001969 TSC_hg19_v1_chr14_+_103800527	233491	+	BC113655|EXOC3L4|91828|exocyst complex component 3-like 4##BC117375|EXOC3L4|91828|exocyst complex component 3-like 4##NM_001077594|EXOC3L4|91828|exocyst complex component 3-like 4##HQ258590|EXOC3L4|91828|exocyst complex component 3-like 4##BC047871|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC048261|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##AB032950|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC155541|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##NM_006035|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##AF128625|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)##BC017818|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##M92357|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_006291|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128449|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##BC128450|TNFAIP2|7127|tumor necrosis factor, alpha-induced protein 2##NM_001969|EIF5|1983|eukaryotic translation initiation factor 5	0.0	0.0	
chr17	8734628	8734808	reg1010318.p2	4.852	+	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-32166	-	BC146949 BC146966 BC171861 NM_001128076	-72842	-	BC029224 AK057296 NM_001158261 NM_144681	-86590	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	36266	-	AY725853 AF128881 NM_014308	81098	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	134263	-	BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5	0.999248	0.0	
chr4	167402901	167403038	reg1012342.p2	4.852	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	-608515	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	-1102812	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	-1154114	+	AK295407 NM_001204353 AK294637 AK295015 AK295281 AK091078 AK295414 AK313042 TSC_hg19_v1_chr4_-_168155646	752642	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	752735	-	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	752771	-	NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##AK295407|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204353|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294637|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295015|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295281|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK091078|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295414|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK313042|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.989969	0.0	denovo_WM_7:24:0.830
chr5	54040249	54040366	reg1011885.p1	4.852	+	TSC_hg19_v1_chr5_+_53813761 AF395536	-226536	+	TSC_hg19_v1_chr5_+_53813656 BC117218 BC117220	-226634	+	TSC_hg19_v1_chr5_+_53813588 AK304195 NM_001145427 BC060791 BC067860 NM_001102575 NM_052870	-226762	+	AB590689 CU680150 AJ973643 X89426 BC011989 NM_001135604 NM_007036 TSC_hg19_v1_chr5_-_54281422 AK300634 AK311817	241076	-	AK312074 BC035802 NM_002104 U26174 DQ894093 EU176203 U35237	279809	+	NM_006144 BC015739 DQ893071 DQ896326 AB528402 CR456968 M18737	358184	+	AF395536|SNX18|112574|sorting nexin 18##BC117218|SNX18|112574|sorting nexin 18##BC117220|SNX18|112574|sorting nexin 18##AK304195|SNX18|112574|sorting nexin 18##NM_001145427|SNX18|112574|sorting nexin 18##BC060791|SNX18|112574|sorting nexin 18##BC067860|SNX18|112574|sorting nexin 18##NM_001102575|SNX18|112574|sorting nexin 18##NM_052870|SNX18|112574|sorting nexin 18##AJ973643|ESM1|11082|endothelial cell-specific molecule 1##X89426|ESM1|11082|endothelial cell-specific molecule 1##BC011989|ESM1|11082|endothelial cell-specific molecule 1##NM_001135604|ESM1|11082|endothelial cell-specific molecule 1##NM_007036|ESM1|11082|endothelial cell-specific molecule 1##AK300634|ESM1|11082|endothelial cell-specific molecule 1##AK311817|ESM1|11082|endothelial cell-specific molecule 1##AK312074|GZMK|3003|granzyme K (granzyme 3; tryptase II)##BC035802|GZMK|3003|granzyme K (granzyme 3; tryptase II)##NM_002104|GZMK|3003|granzyme K (granzyme 3; tryptase II)##U26174|GZMK|3003|granzyme K (granzyme 3; tryptase II)##DQ894093|GZMK|3003|granzyme K (granzyme 3; tryptase II)##EU176203|GZMK|3003|granzyme K (granzyme 3; tryptase II)##U35237|GZMK|3003|granzyme K (granzyme 3; tryptase II)##NM_006144|GZMA|3001|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)##BC015739|GZMA|3001|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)##DQ893071|GZMA|3001|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)##DQ896326|GZMA|3001|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)##CR456968|GZMA|3001|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)##M18737|GZMA|3001|granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3)	1.503395	0.0	denovo_WM_7:-23:0.981	denovo_WM_7:-40:0.207	denovo_WM_7:-41:0.315
chr8	42596259	42596375	reg1004451.p1	4.852	+	BC069681 BC069703 BC069788 NM_000749 Y08417 U62438 CU686976 CU686982	-43692	+	TSC_hg19_v1_chr8_-_42397069 BC028600 NM_006749	-199256	-	TSC_hg19_v1_chr8_+_42396791 NM_138436 BC013035 NM_001135674 NM_001135675	-199490	+	NM_001199279 NM_004198	27611	-	AL832077 BC021721 AK223231 TSC_hg19_v1_chr8_-_42698469 AK001339 NM_018105 NM_199003	102144	-	BC039461 BC032393 BC013422 AK225086 AL136620 AK225568 AK027748 AK090864 AX746655 BC058289 BC044566 NM_001160223 NM_001160224 NM_001160225 NM_030954	155426	-	BC069681|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069703|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069788|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##NM_000749|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##Y08417|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##U62438|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC028600|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_006749|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_138436|C8orf40|114926|chromosome 8 open reading frame 40##BC013035|C8orf40|114926|chromosome 8 open reading frame 40##NM_001135674|C8orf40|114926|chromosome 8 open reading frame 40##NM_001135675|C8orf40|114926|chromosome 8 open reading frame 40##NM_001199279|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##NM_004198|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##AL832077|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC021721|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK223231|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK001339|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_018105|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_199003|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC039461|RNF170|81790|ring finger protein 170##BC032393|RNF170|81790|ring finger protein 170##BC013422|RNF170|81790|ring finger protein 170##AK225086|RNF170|81790|ring finger protein 170##AL136620|RNF170|81790|ring finger protein 170##AK225568|RNF170|81790|ring finger protein 170##AK027748|RNF170|81790|ring finger protein 170##AK090864|RNF170|81790|ring finger protein 170##BC058289|RNF170|81790|ring finger protein 170##BC044566|RNF170|81790|ring finger protein 170##NM_001160223|RNF170|81790|ring finger protein 170##NM_001160224|RNF170|81790|ring finger protein 170##NM_001160225|RNF170|81790|ring finger protein 170##NM_030954|RNF170|81790|ring finger protein 170	1.007255	0.0	denovo_WM_7:33:0.247	denovo_WM_7:34:0.416
chr9	126964836	126965016	reg1006527.p2	4.852	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-190855	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-191043	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-272615	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	55084	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	55319	+	TSC_hg19_v1_chr9_+_127020255 AB026289	55338	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.0	0.462309	CTCF.p2:28:0.462
chr9	41810856	41810967	reg1010771.p1	4.852	+	BC040528 NM_001113541 NM_015667	-310233	+	BC040528 NM_001113541 NM_015667 NM_001242613	-483532	-	AK057375 AK292150 NM_033160	-1018825	-	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	144003	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	557447	+	NM_001099279 NM_199244	906322	+	BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AK057375|ZNF658|26149|zinc finger protein 658##AK292150|ZNF658|26149|zinc finger protein 658##NM_033160|ZNF658|26149|zinc finger protein 658##BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.991002	0.0	denovo_WM_7:33:0.330	denovo_WM_7:34:0.330	denovo_WM_7:35:0.330
chr5	88367760	88367940	reg1001616.p2	4.851	+	AL833268 AL833274 NM_001131005 NM_001193347	-167956	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-182586	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-182730	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	1337689	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1402332	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1402728	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.862331	0.0	denovo_WM_7:-107:0.709
chr6_dbb_hap3	3086102	3086221	reg1009471.p1	4.851	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.995747	0.0	
chr14	89914042	89914208	reg1010245.p2	4.850	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-30715	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-35349	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-623132	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	171470	-	BC001787 BX247991 AK298930 AK094740 NM_145231	506935	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	508121	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.998816	0.0	
chr20	43496308	43496425	reg1010774.p1	4.850	+	AK126807 BC104191 BC104190 BC112985 AY326954 NM_001205317 NM_182970	-57437	-	AF257081 NM_022358 BC093874 BC143282 AF294350 AF294351 AF336342	-121847	+	TSC_hg19_v1_chr20_+_43344010 AK313853 BC064379 AF083500 AF074604 AY358915 CU687868	-152349	+	TSC_hg19_v1_chr20_+_43514345 NM_003404 NM_139323 AK292717 BC001359	17978	+	TSC_hg19_v1_chr20_+_43514390 AL834170 AB209759	18004	+	TSC_hg19_v1_chr20_+_43538705 NM_001124756 EU190483	42352	+	AK126807|RIMS4|140730|regulating synaptic membrane exocytosis 4##BC104191|RIMS4|140730|regulating synaptic membrane exocytosis 4##BC104190|RIMS4|140730|regulating synaptic membrane exocytosis 4##BC112985|RIMS4|140730|regulating synaptic membrane exocytosis 4##AY326954|RIMS4|140730|regulating synaptic membrane exocytosis 4##NM_001205317|RIMS4|140730|regulating synaptic membrane exocytosis 4##NM_182970|RIMS4|140730|regulating synaptic membrane exocytosis 4##AF257081|KCNK15|60598|potassium channel, subfamily K, member 15##NM_022358|KCNK15|60598|potassium channel, subfamily K, member 15##BC093874|KCNK15|60598|potassium channel, subfamily K, member 15##BC143282|KCNK15|60598|potassium channel, subfamily K, member 15##AF294350|KCNK15|60598|potassium channel, subfamily K, member 15##AF294351|KCNK15|60598|potassium channel, subfamily K, member 15##AF336342|KCNK15|60598|potassium channel, subfamily K, member 15##AK313853|WISP2|8839|WNT1 inducible signaling pathway protein 2##BC064379|WISP2|8839|WNT1 inducible signaling pathway protein 2##AF083500|WISP2|8839|WNT1 inducible signaling pathway protein 2##AF074604|WISP2|8839|WNT1 inducible signaling pathway protein 2##AY358915|WISP2|8839|WNT1 inducible signaling pathway protein 2##NM_003404|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##NM_139323|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##AK292717|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##BC001359|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##AL834170|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##AB209759|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##NM_001124756|PABPC1L|80336|poly(A) binding protein, cytoplasmic 1-like##EU190483|PABPC1L|80336|poly(A) binding protein, cytoplasmic 1-like	1.961834	0.871122	denovo_WM_7:-18:0.577	denovo_WM_7:-24:0.398	CTCF.p2:29:0.871	denovo_WM_7:-41:0.597
chr7	138789469	138789574	reg1005445.p1	4.850	+	TSC_hg19_v1_chr7_-_138720787 BC008842 NM_080660 BC020784	-68687	-	TSC_hg19_v1_chr7_-_138666114 AM989468 AM989469 AM989472 AM989473 AM989474 NM_001164665 NM_020910	-123288	-	BC109304 BC109305 AF245517 AK292945 NM_020632 NM_130840	-306627	-	AK055851 BX647974 TSC_hg19_v1_chr7_-_138794101	4580	-	TSC_hg19_v1_chr7_-_138794133 AK292811	4652	-	BC025308 BC033105 BC040956 NM_020119 NM_024625 BX571742 TSC_hg19_v1_chr7_-_138794467	4909	-	BC008842|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##NM_080660|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##BC020784|ZC3HAV1L|92092|zinc finger CCCH-type, antiviral 1-like##AM989468|KIAA1549|57670|KIAA1549##AM989469|KIAA1549|57670|KIAA1549##NM_001164665|KIAA1549|57670|KIAA1549##NM_020910|KIAA1549|57670|KIAA1549##BC109304|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##BC109305|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AF245517|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK292945|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_020632|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##NM_130840|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4##AK055851|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX647974|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##AK292811|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC025308|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC033105|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BC040956|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_020119|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##NM_024625|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1##BX571742|ZC3HAV1|56829|zinc finger CCCH-type, antiviral 1	1.32016	0.0	denovo_WM_7:101:0.249
chr1	154642166	154642346	reg1010003.p1	4.849	+	TSC_hg19_v1_chr1_-_154600448 NM_001025107 AK097241	-41791	-	X98561 TSC_hg19_v1_chr1_-_154600438 AB209891 AF084516 BX640741 BX538232	-41842	-	AK304153 TSC_hg19_v1_chr1_-_154580680 X79449 NM_001111 NM_015840 NM_015841	-61556	-	CU692066 HQ448417 AF438203 BC042147 NM_170782	190006	-	BX649146 TSC_hg19_v1_chr1_-_154840541	198245	-	AF031815 Y08263 TSC_hg19_v1_chr1_-_154842763 AJ251016 AK310077 NM_001204087 NM_002249	200490	-	NM_001025107|ADAR|103|adenosine deaminase, RNA-specific##AK097241|ADAR|103|adenosine deaminase, RNA-specific##AB209891|ADAR|103|adenosine deaminase, RNA-specific##AF084516|ADAR|103|adenosine deaminase, RNA-specific##BX640741|ADAR|103|adenosine deaminase, RNA-specific##BX538232|ADAR|103|adenosine deaminase, RNA-specific##AK304153|ADAR|103|adenosine deaminase, RNA-specific##X79449|ADAR|103|adenosine deaminase, RNA-specific##NM_001111|ADAR|103|adenosine deaminase, RNA-specific##NM_015840|ADAR|103|adenosine deaminase, RNA-specific##NM_015841|ADAR|103|adenosine deaminase, RNA-specific##HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF031815|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##Y08263|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AJ251016|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AK310077|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001204087|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_002249|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	0.0	0.691908	CTCF.p2:81:0.692
chr16	33293884	33294064	reg1008700.p1	4.849	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-31841	+	AL133588 NM_016212	-32460	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-88376	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	13361298	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	13361332	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	13429088	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	0.0	0.0	
chr9	126728685	126728796	reg1008452.p1	4.849	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-36429	-	NM_173689 AK123000 DQ426866 AY720432	-610247	+	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	-697852	-	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	45143	+	TSC_hg19_v1_chr9_+_126774046 BC034458	45331	+	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	291270	+	BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC034458|LHX2|9355|LIM homeobox 2##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.986191	0.0	denovo_WM_7:27:0.804
chr12	121289329	121289454	reg1011000.p2	4.848	+	AK074916 TSC_hg19_v1_chr12_-_121248688	-40708	-	NM_000017 TSC_hg19_v1_chr12_+_121163641 BC025963 AK300645 M26393 DQ892184 DQ895378 CU693082 AB527081	-125762	+	TSC_hg19_v1_chr12_+_121148260 AK126367 BC070088	-141118	+	AY169313 TSC_hg19_v1_chr12_-_121341927 BC073910 AK291161	52573	-	TSC_hg19_v1_chr12_-_121342070 AK223590 NM_139015	52743	-	TSC_hg19_v1_chr12_+_121416378 X71346 HM116541 HM116542 HM116543 HM116544 HM116545 HM116546 HM116547 HM116548 HM116549 HM116550 HM116551 X71347 HM116552 HM116557 HM116558 HM116559 HM116560 HM116561 HM116562 HM116563 AK298422	127006	+	AK074916|SPPL3|121665|signal peptide peptidase-like 3##NM_000017|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##BC025963|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##AK300645|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##M26393|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##DQ892184|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##DQ895378|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##AB527081|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##AK126367|UNC119B|84747|unc-119 homolog B (C. elegans)##BC070088|UNC119B|84747|unc-119 homolog B (C. elegans)##AY169313|SPPL3|121665|signal peptide peptidase-like 3##BC073910|SPPL3|121665|signal peptide peptidase-like 3##AK291161|SPPL3|121665|signal peptide peptidase-like 3##AK223590|SPPL3|121665|signal peptide peptidase-like 3##NM_139015|SPPL3|121665|signal peptide peptidase-like 3##X71346|HNF1A|6927|HNF1 homeobox A##HM116541|HNF1A|6927|HNF1 homeobox A##HM116542|HNF1A|6927|HNF1 homeobox A##HM116543|HNF1A|6927|HNF1 homeobox A##HM116544|HNF1A|6927|HNF1 homeobox A##HM116545|HNF1A|6927|HNF1 homeobox A##HM116546|HNF1A|6927|HNF1 homeobox A##HM116547|HNF1A|6927|HNF1 homeobox A##HM116548|HNF1A|6927|HNF1 homeobox A##HM116549|HNF1A|6927|HNF1 homeobox A##X71347|HNF1A|6927|HNF1 homeobox A##HM116552|HNF1A|6927|HNF1 homeobox A##HM116557|HNF1A|6927|HNF1 homeobox A##HM116558|HNF1A|6927|HNF1 homeobox A##HM116559|HNF1A|6927|HNF1 homeobox A##HM116560|HNF1A|6927|HNF1 homeobox A##HM116561|HNF1A|6927|HNF1 homeobox A##HM116563|HNF1A|6927|HNF1 homeobox A##AK298422|HNF1A|6927|HNF1 homeobox A	0.96019	0.0	denovo_WM_7:25:0.787
chr1	234907433	234907586	reg1002387.p1	4.848	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-11735	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-162263	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-163651	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	384580	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	384722	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	417054	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.984525	0.0	denovo_WM_7:-13:0.565	denovo_WM_7:-14:0.365
chr15	57130447	57130593	reg1013004.p1	4.848	+	TSC_hg19_v1_chr15_-_57025818 BX641000 BX640707 NM_001002843 NM_001002844 NM_017661 AK295159	-104688	-	TSC_hg19_v1_chr15_-_57025690 AB046804 BC053649 BC064359 AK310882 AK289739 BC130451 BC136412	-104808	-	TSC_hg19_v1_chr15_-_56757262 BC031046 AK310029 BC012554 BC034991 AK002084 NM_018365	-373234	-	TSC_hg19_v1_chr15_-_57210733 AK096657 BC036541	80216	-	TSC_hg19_v1_chr15_+_57210823 NM_003205 NM_207036 NM_207037 NM_207038	80307	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	80348	+	BX641000|ZNF280D|54816|zinc finger protein 280D##BX640707|ZNF280D|54816|zinc finger protein 280D##NM_001002843|ZNF280D|54816|zinc finger protein 280D##NM_001002844|ZNF280D|54816|zinc finger protein 280D##NM_017661|ZNF280D|54816|zinc finger protein 280D##AK295159|ZNF280D|54816|zinc finger protein 280D##AB046804|ZNF280D|54816|zinc finger protein 280D##BC053649|ZNF280D|54816|zinc finger protein 280D##BC064359|ZNF280D|54816|zinc finger protein 280D##AK310882|ZNF280D|54816|zinc finger protein 280D##AK289739|ZNF280D|54816|zinc finger protein 280D##BC130451|ZNF280D|54816|zinc finger protein 280D##BC136412|ZNF280D|54816|zinc finger protein 280D##BC031046|MNS1|55329|meiosis-specific nuclear structural 1##BC012554|MNS1|55329|meiosis-specific nuclear structural 1##BC034991|MNS1|55329|meiosis-specific nuclear structural 1##AK002084|MNS1|55329|meiosis-specific nuclear structural 1##NM_018365|MNS1|55329|meiosis-specific nuclear structural 1##AK096657|LOC145783|145783|uncharacterized LOC145783##NM_003205|TCF12|6938|transcription factor 12##NM_207036|TCF12|6938|transcription factor 12##NM_207037|TCF12|6938|transcription factor 12##NM_207038|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12	0.995221	0.0	
chr5	157025662	157025802	reg1007105.p2	4.848	+	AF311317 AF326918 TSC_hg19_v1_chr5_-_157002784 Y13786 AK091464 AK308182 AX747000 NM_033274	-22927	-	AB462931 TSC_hg19_v1_chr5_-_157002728	-23016	-	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	-138462	+	AB527685 TSC_hg19_v1_chr5_-_157079170	53396	-	AB022083 AB022441 AK308329 AK225861 BC033492 NM_007017 NM_178424	53667	-	BC035142 AK055284 TSC_hg19_v1_chr5_-_157098473 AK302162	72733	-	AF311317|ADAM19|8728|ADAM metallopeptidase domain 19##AF326918|ADAM19|8728|ADAM metallopeptidase domain 19##Y13786|ADAM19|8728|ADAM metallopeptidase domain 19##AK091464|ADAM19|8728|ADAM metallopeptidase domain 19##AK308182|ADAM19|8728|ADAM metallopeptidase domain 19##NM_033274|ADAM19|8728|ADAM metallopeptidase domain 19##AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4##AB022083|SOX30|11063|SRY (sex determining region Y)-box 30##AB022441|SOX30|11063|SRY (sex determining region Y)-box 30##AK308329|SOX30|11063|SRY (sex determining region Y)-box 30##BC033492|SOX30|11063|SRY (sex determining region Y)-box 30##NM_007017|SOX30|11063|SRY (sex determining region Y)-box 30##NM_178424|SOX30|11063|SRY (sex determining region Y)-box 30##AK302162|SOX30|11063|SRY (sex determining region Y)-box 30	0.0	0.026681	
chr11	77348792	77348972	reg1012892.p2	4.847	+	AB590787 AF026003 BT019907 AF005422 BC119634 BC119635 TSC_hg19_v1_chr11_-_77348840 U53454 AK315259 X91788 NM_001293	-68	-	BC040443 NM_173039 TSC_hg19_v1_chr11_+_77300718 AB028147	-48182	+	TSC_hg19_v1_chr11_-_77184767 U51120 BC050377 BC109298 BC109299 AK293098 U24152 NM_001128620 NM_002576	-164050	-	AF380176 AB527448 TSC_hg19_v1_chr11_-_77531769 BC015360 NM_016578 AK098130	182950	-	TSC_hg19_v1_chr11_+_77532238 AF092136 AK024688 BC002752 NM_024684	183321	+	AL834171 EU446555 TSC_hg19_v1_chr11_-_77705710 CU679559 AK000455 BC018672	356802	-	AF026003|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BT019907|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AF005422|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119634|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119635|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##U53454|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AK315259|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##X91788|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##NM_001293|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC040443|AQP11|282679|aquaporin 11##NM_173039|AQP11|282679|aquaporin 11##AB028147|AQP11|282679|aquaporin 11##U51120|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC050377|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109298|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109299|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK293098|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##U24152|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_001128620|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_002576|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AF380176|RSF1|51773|remodeling and spacing factor 1##BC015360|RSF1|51773|remodeling and spacing factor 1##NM_016578|RSF1|51773|remodeling and spacing factor 1##AF092136|C11orf67|28971|chromosome 11 open reading frame 67##AK024688|C11orf67|28971|chromosome 11 open reading frame 67##BC002752|C11orf67|28971|chromosome 11 open reading frame 67##NM_024684|C11orf67|28971|chromosome 11 open reading frame 67##AL834171|INTS4|92105|integrator complex subunit 4##EU446555|INTS4|92105|integrator complex subunit 4##AK000455|INTS4|92105|integrator complex subunit 4##BC018672|INTS4|92105|integrator complex subunit 4	0.0	0.0	
chr1	183001640	183001820	reg1008109.p2	4.847	+	TSC_hg19_v1_chr1_+_182992694 AB385108	-8958	+	TSC_hg19_v1_chr1_+_182992572 BC067813 NM_002293 J03202	-9226	+	BC050305 BC132764 BC144326 AF288398 NM_030933 BC026084	-79149	-	BC035429 TSC_hg19_v1_chr1_+_183114284	112521	+	NM_005562 NM_018891 TSC_hg19_v1_chr1_+_183155211	153462	+	AK307945 Z15008 Z15009 TSC_hg19_v1_chr1_+_183155386	153643	+	BC067813|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)##NM_002293|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)##J03202|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)##BC050305|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC132764|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC144326|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##AF288398|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##NM_030933|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC026084|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC035429|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)##NM_005562|LAMC2|3918|laminin, gamma 2##NM_018891|LAMC2|3918|laminin, gamma 2##AK307945|LAMC2|3918|laminin, gamma 2##Z15008|LAMC2|3918|laminin, gamma 2##Z15009|LAMC2|3918|laminin, gamma 2	1.988387	0.0	denovo_WM_7:-65:0.419	denovo_WM_7:-66:0.424	denovo_WM_7:102:0.219	denovo_WM_7:103:0.650
chr13	76023768	76023836	reg1000842.p2	4.847	+	CR749622 TSC_hg19_v1_chr13_-_75901948	-121880	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1315406	-	AF161471 AF113122 NM_007249	-1315813	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	32536	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	88176	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	100122	+	CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	1.084307	0.0	
chr17	80488369	80488461	reg1009479.p1	4.847	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-10825	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-71773	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-71852	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	117868	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	168119	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	186191	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	1.987589	0.0	denovo_WM_7:-17:0.248	denovo_WM_7:-18:0.248	denovo_WM_7:-19:0.248	denovo_WM_7:-20:0.248
chr2	88906406	88906504	reg1010412.p2	4.847	+	AK058098 NM_152670 BC029522	-82271	+	NM_001135649	-154403	-	NM_018271 BC050699 BC035315 AK001778	-433699	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	20523	-	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	84760	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	158946	+	AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##NM_001135649|FOXI3|344167|forkhead box I3##NM_018271|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC050699|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC035315|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK001778|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.0	0.0	
chr5	133078005	133078166	reg1010561.p1	4.847	+	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	-129847	-	TSC_hg19_v1_chr5_-_132948202 AK055684	-129886	-	TSC_hg19_v1_chr5_+_132432890 AK315862	-645194	+	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	226290	-	TSC_hg19_v1_chr5_-_133340377 BC008482	262282	-	TSC_hg19_v1_chr5_-_133340386 BC090042	262298	-	NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##AK055684|FSTL4|23105|follistatin-like 4##AK315862|HSPA4|3308|heat shock 70kDa protein 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15##BC008482|VDAC1|7416|voltage-dependent anion channel 1##BC090042|VDAC1|7416|voltage-dependent anion channel 1	0.0	0.0	
chr5	88275252	88275396	reg1011123.p1	4.847	+	AL833268 AL833274 NM_001131005 NM_001193347	-75430	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-90060	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-90204	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	1430215	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1494858	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1495254	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.917941	0.0	denovo_WM_7:17:0.669	denovo_WM_7:19:0.211
chr16	18778478	18778617	reg1001867.p1	4.846	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	-205156	-	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-1213742	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-2452017	+	TSC_hg19_v1_chr16_-_18798077 AK127316	19549	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	23108	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	34235	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1	0.984568	0.0	denovo_WM_7:-27:0.246	denovo_WM_7:-28:0.248	denovo_WM_7:-29:0.245	denovo_WM_7:-30:0.245
chr18	13608439	13608597	reg1002994.p2	4.846	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-389733	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-617173	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-660454	+	NM_001003674 NM_001003675	3146	+	AF009426 AF009427 NM_004338 NM_181483	12348	+	TSC_hg19_v1_chr18_-_13726549 AK055618	117988	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr3	45930914	45931008	reg1004415.p1	4.846	+	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	-2906	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-47366	-	TSC_hg19_v1_chr3_-_45838112 AF125107	-92813	-	NM_006564 Y13248	54011	+	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	106360	-	AB189434 AB189435 NM_001024644 NM_005283	138017	-	NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AF125107|SLC6A20|54716|solute carrier family 6 (proline IMINO transporter), member 20##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1	0.984007	0.0	denovo_WM_7:24:0.953
chr6	157920159	157920255	reg1002206.p2	4.846	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-117668	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-174990	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-175623	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	324082	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	324167	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	482680	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chr7	36764172	36764280	reg1011304.p1	4.846	+	TSC_hg19_v1_chr7_-_36764092 M62840 AK297016 AK308215 BC025698 AK223476 NM_001177506 NM_001177507 NM_001637	-150	-	BC028678 NM_001100425	-334512	-	TSC_hg19_v1_chr7_+_36429470 BC070066 NM_018685 AK299803 AK291254 AF273437	-334786	+	BC064635 NM_001039459	260464	-	D87457 BC003051 BC077074 TSC_hg19_v1_chr7_-_37025739 AK301151	261494	-	AK291784 NM_001206482	629045	-	M62840|AOAH|313|acyloxyacyl hydrolase (neutrophil)##AK297016|AOAH|313|acyloxyacyl hydrolase (neutrophil)##AK308215|AOAH|313|acyloxyacyl hydrolase (neutrophil)##BC025698|AOAH|313|acyloxyacyl hydrolase (neutrophil)##AK223476|AOAH|313|acyloxyacyl hydrolase (neutrophil)##NM_001177506|AOAH|313|acyloxyacyl hydrolase (neutrophil)##NM_001177507|AOAH|313|acyloxyacyl hydrolase (neutrophil)##NM_001637|AOAH|313|acyloxyacyl hydrolase (neutrophil)##BC028678|KIAA0895|23366|KIAA0895##NM_001100425|KIAA0895|23366|KIAA0895##BC070066|ANLN|54443|anillin, actin binding protein##NM_018685|ANLN|54443|anillin, actin binding protein##AK299803|ANLN|54443|anillin, actin binding protein##AK291254|ANLN|54443|anillin, actin binding protein##AF273437|ANLN|54443|anillin, actin binding protein##BC064635|ELMO1|9844|engulfment and cell motility 1##NM_001039459|ELMO1|9844|engulfment and cell motility 1##D87457|ELMO1|9844|engulfment and cell motility 1##BC003051|ELMO1|9844|engulfment and cell motility 1##BC077074|ELMO1|9844|engulfment and cell motility 1##AK301151|ELMO1|9844|engulfment and cell motility 1##AK291784|ELMO1|9844|engulfment and cell motility 1##NM_001206482|ELMO1|9844|engulfment and cell motility 1	1.014806	0.0	denovo_WM_7:13:0.826
chr12	861390	861531	reg1010272.p2	4.845	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-88745	-	TSC_hg19_v1_chr12_-_752800 AK298043	-108641	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-109282	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	696	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	1296	+	BC013629 TSC_hg19_v1_chr12_+_1017145	155622	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.996841	0.0	denovo_WM_7:-77:0.435	denovo_WM_7:-78:0.435
chr1	51970903	51971009	reg1002618.p2	4.845	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-83190	-	AF007170 NM_001144832	-160218	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-174724	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	13967	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	14068	-	NM_024586 NM_148906 NM_148908 NM_148909	111589	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.0	0.012418	
chr19	6587574	6587703	reg1012606.p2	4.845	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-56612	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-85321	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-105855	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	3394	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	3468	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	3520	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.164488	0.0	
chr21	30472389	30472507	reg1011444.p1	4.845	+	AY171599 NM_020152	-19576	+	AK308063 TSC_hg19_v1_chr21_-_30445995 AK298801 BC072001 BC005220 NM_006585	-26459	-	TSC_hg19_v1_chr21_-_30445966 BC012584 BC095470	-26491	-	TSC_hg19_v1_chr21_+_30517918 AK309998 EF219160	45462	+	TSC_hg19_v1_chr21_+_30671158 AK291021 AB002803	198716	+	TSC_hg19_v1_chr21_+_30671217 NM_001186	198772	+	AY171599|C21orf7|56911|chromosome 21 open reading frame 7##NM_020152|C21orf7|56911|chromosome 21 open reading frame 7##AK308063|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK298801|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC072001|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC005220|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##NM_006585|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC012584|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##BC095470|CCT8|10694|chaperonin containing TCP1, subunit 8 (theta)##AK309998|C21orf7|56911|chromosome 21 open reading frame 7##EF219160|C21orf7|56911|chromosome 21 open reading frame 7##AK291021|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##AB002803|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1##NM_001186|BACH1|571|BTB and CNC homology 1, basic leucine zipper transcription factor 1	0.999019	0.0	
chr4	9972282	9972420	reg1009084.p1	4.845	+	NM_000798	-189094	+	AF529414 NM_001040448	-526092	+	BC100993 AY509884 BC100991 BC100992 NM_001105662 NM_001242326 NM_001242327 NM_001242328 NM_001242329 NM_001242330 NM_001242331 NM_001242332	-607498	+	TSC_hg19_v1_chr4_-_10023140 AF210317 NM_020041 BC110414	50773	-	AK310895 BC018897 NM_001001290 AK096819	69571	-	TSC_hg19_v1_chr4_-_10118286 AB385044 CU674086 CU677992	145936	-	NM_000798|DRD5|1816|dopamine receptor D5##AF529414|DEFB131|644414|defensin, beta 131##NM_001040448|DEFB131|644414|defensin, beta 131##BC100993|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_001242326|LOC728373|728373|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242327|LOC728369|728369|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242328|LOC728379|728379|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242329|USP17L5|728386|ubiquitin specific peptidase 17-like 5##NM_001242330|LOC728393|728393|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242331|LOC728400|728400|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242332|LOC728405|728405|ubiquitin carboxyl-terminal hydrolase 17-like##AF210317|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_020041|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC110414|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK310895|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC018897|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_001001290|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK096819|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	0.54269	0.0	
chr5	115968768	115968931	reg1006922.p2	4.845	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-58335	-	TSC_hg19_v1_chr5_+_115898220 D28352	-70625	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-548128	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2355389	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2437962	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2438316	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr5	14202471	14202625	reg1006678.p2	4.845	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-58876	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-190678	-	AX800026 AY045575 NM_001369	-257960	-	TSC_hg19_v1_chr5_+_14488527 AK131423	285991	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	379352	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	379416	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	0.0	0.0	
chr5	8577969	8578099	reg1010216.p1	4.845	+	TSC_hg19_v1_chr5_+_7869306 BC062577	-708724	+	AF121214 BC109216 BC109217 NM_002454 NM_024010 TSC_hg19_v1_chr5_+_7869273 AK308442 AK311663 AF025794 BC054816 BC035977	-708775	+	TSC_hg19_v1_chr5_-_7869116 AK026927 AF161354 NM_024091	-708902	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	968160	-	BC095521 NM_019599	1052428	-	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	1671950	-	BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF121214|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109216|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109217|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_002454|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_024010|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK308442|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK311663|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF025794|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC054816|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC035977|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK026927|FASTKD3|79072|FAST kinase domains 3##AF161354|FASTKD3|79072|FAST kinase domains 3##NM_024091|FASTKD3|79072|FAST kinase domains 3##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##BC063406|FAM173B|134145|family with sequence similarity 173, member B	0.95747	0.0	denovo_WM_7:-41:0.697
chr6	36527333	36527421	reg1009822.p2	4.845	+	TSC_hg19_v1_chr6_-_36515255 BC012085 NM_007271 BC095413	-12120	-	TSC_hg19_v1_chr6_-_36515239 AK312559	-12225	-	TSC_hg19_v1_chr6_+_36410807 BC023525 AK302861 AK304377	-116545	+	NM_003017 TSC_hg19_v1_chr6_+_36562093	34714	+	TSC_hg19_v1_chr6_+_36562138 AK312553	34759	+	TSC_hg19_v1_chr6_+_36562140 AK304097 D28423 BC000914 BC069018 AF107405	34803	+	BC012085|STK38|11329|serine/threonine kinase 38##NM_007271|STK38|11329|serine/threonine kinase 38##BC095413|STK38|11329|serine/threonine kinase 38##AK312559|STK38|11329|serine/threonine kinase 38##BC023525|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK302861|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK304377|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_003017|SRSF3|6428|serine/arginine-rich splicing factor 3##AK312553|SRSF3|6428|serine/arginine-rich splicing factor 3##AK304097|SRSF3|6428|serine/arginine-rich splicing factor 3##BC000914|SRSF3|6428|serine/arginine-rich splicing factor 3##BC069018|SRSF3|6428|serine/arginine-rich splicing factor 3##AF107405|SRSF3|6428|serine/arginine-rich splicing factor 3	0.0	0.0	
chr11	128498436	128498616	reg1012334.p1	4.844	+	BX640634 NM_001143820	-41074	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-106392	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-106563	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	65272	+	TSC_hg19_v1_chr11_+_128563966 AK313370	65435	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	65454	+	BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1	0.526267	0.0	
chr1	159130929	159131046	reg1013539.p1	4.844	+	AK292042 BC010940 AF024714 NM_004833	-84387	-	NM_001206567 NM_005531 TSC_hg19_v1_chr1_+_158979716 AF208043 M63838 AB208989 BC017059 AF086545 AK296228 AK307957	-151197	+	NM_152501 NM_198928 NM_198929 NM_198930 AY185344 AY185345 AY185346 AY185347 BC090944 AK308350 BC020822 BC073133 BC114470 BC139741	-229628	+	AK289541 NM_021189 TSC_hg19_v1_chr1_+_159141404 AK308915 NM_001127173 AF363367 AY358332 AF062733 BC033819 AY046418 AF529206 DQ890848 DQ894002	10478	+	AK291593 NM_002036	42815	+	NM_001122951 U01839	44061	+	AK292042|AIM2|9447|absent in melanoma 2##BC010940|AIM2|9447|absent in melanoma 2##AF024714|AIM2|9447|absent in melanoma 2##NM_004833|AIM2|9447|absent in melanoma 2##NM_001206567|IFI16|3428|interferon, gamma-inducible protein 16##NM_005531|IFI16|3428|interferon, gamma-inducible protein 16##AF208043|IFI16|3428|interferon, gamma-inducible protein 16##M63838|IFI16|3428|interferon, gamma-inducible protein 16##AB208989|IFI16|3428|interferon, gamma-inducible protein 16##BC017059|IFI16|3428|interferon, gamma-inducible protein 16##AF086545|IFI16|3428|interferon, gamma-inducible protein 16##AK296228|IFI16|3428|interferon, gamma-inducible protein 16##AK307957|IFI16|3428|interferon, gamma-inducible protein 16##NM_152501|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198928|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198929|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198930|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185344|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185345|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185346|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185347|PYHIN1|149628|pyrin and HIN domain family, member 1##BC090944|PYHIN1|149628|pyrin and HIN domain family, member 1##AK308350|PYHIN1|149628|pyrin and HIN domain family, member 1##BC020822|PYHIN1|149628|pyrin and HIN domain family, member 1##BC073133|PYHIN1|149628|pyrin and HIN domain family, member 1##BC114470|PYHIN1|149628|pyrin and HIN domain family, member 1##BC139741|PYHIN1|149628|pyrin and HIN domain family, member 1##AK289541|CADM3|57863|cell adhesion molecule 3##NM_021189|CADM3|57863|cell adhesion molecule 3##AK308915|CADM3|57863|cell adhesion molecule 3##NM_001127173|CADM3|57863|cell adhesion molecule 3##AF363367|CADM3|57863|cell adhesion molecule 3##AY358332|CADM3|57863|cell adhesion molecule 3##AF062733|CADM3|57863|cell adhesion molecule 3##BC033819|CADM3|57863|cell adhesion molecule 3##AY046418|CADM3|57863|cell adhesion molecule 3##AF529206|CADM3|57863|cell adhesion molecule 3##DQ890848|CADM3|57863|cell adhesion molecule 3##DQ894002|CADM3|57863|cell adhesion molecule 3##AK291593|DARC|2532|Duffy blood group, chemokine receptor##NM_002036|DARC|2532|Duffy blood group, chemokine receptor##NM_001122951|DARC|2532|Duffy blood group, chemokine receptor##U01839|DARC|2532|Duffy blood group, chemokine receptor	0.0	0.099272	
chr17	55164062	55164239	reg1012520.p2	4.844	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-1007	+	TSC_hg19_v1_chr17_+_55162639 NM_003488 BC000729 X97335	-1536	+	NM_021626 TSC_hg19_v1_chr17_+_55055513 AY358559 AF282618 AK027373 BC010078 AK298161 CU687218 BC072405 AF113214	-108646	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	169823	+	AK093888 AX748353 NM_170721	170223	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	763254	-	NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_003488|AKAP1|8165|A kinase (PRKA) anchor protein 1##BC000729|AKAP1|8165|A kinase (PRKA) anchor protein 1##X97335|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_021626|SCPEP1|59342|serine carboxypeptidase 1##AY358559|SCPEP1|59342|serine carboxypeptidase 1##AF282618|SCPEP1|59342|serine carboxypeptidase 1##AK027373|SCPEP1|59342|serine carboxypeptidase 1##BC010078|SCPEP1|59342|serine carboxypeptidase 1##AK298161|SCPEP1|59342|serine carboxypeptidase 1##BC072405|SCPEP1|59342|serine carboxypeptidase 1##AF113214|SCPEP1|59342|serine carboxypeptidase 1##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23	0.985749	0.0	denovo_WM_7:14:0.932
chr19	7185840	7186020	reg1001612.p1	4.844	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-86379	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-116215	+	AK315405 NM_001044387 NM_001044388 NM_024341	-116468	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	108030	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	274077	+	TSC_hg19_v1_chr19_+_7460061 AB011093	274147	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.719221	0.0	denovo_WM_7:-12:0.503	denovo_WM_7:-66:0.237	denovo_WM_7:-67:0.237	denovo_WM_7:-68:0.237	denovo_WM_7:-69:0.237
chr6	16323753	16323895	reg1011940.p1	4.844	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-84973	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-180514	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-194387	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	437873	-	NM_001190766	778664	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	958030	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	1.978836	0.0	denovo_WM_7:-44:0.946	denovo_WM_7:-59:0.967
chr1	32357103	32357216	reg1008773.p1	4.843	+	BC114430 AK131447 NM_144569 AK091016 AX746730	-75560	-	TSC_hg19_v1_chr1_-_32264318 AK095829	-92838	-	BC029069 AK096192 TSC_hg19_v1_chr1_-_32264233 BC007910	-92919	-	NM_001195100 NM_001195101	28099	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	46772	-	TSC_hg19_v1_chr1_-_32403992 NM_080391	46838	-	BC114430|SPOCD1|90853|SPOC domain containing 1##AK131447|SPOCD1|90853|SPOC domain containing 1##NM_144569|SPOCD1|90853|SPOC domain containing 1##AK091016|SPOCD1|90853|SPOC domain containing 1##AK095829|SPOCD1|90853|SPOC domain containing 1##BC029069|SPOCD1|90853|SPOC domain containing 1##BC007910|SPOCD1|90853|SPOC domain containing 1##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2	0.010108	0.0	
chr17	17949159	17949284	reg1010353.p2	4.843	+	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	-6414	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	-6818	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	-73021	+	TSC_hg19_v1_chr17_+_17991289 AK313362 BC062572 BC000493 NM_001388 AK297569 X80754 AK295575 DQ890768 DQ893929 BT006976	42047	+	AF144094 NM_016239	62798	+	TSC_hg19_v1_chr17_+_18086815 NM_017758	137618	+	BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AK313362|DRG2|1819|developmentally regulated GTP binding protein 2##BC062572|DRG2|1819|developmentally regulated GTP binding protein 2##BC000493|DRG2|1819|developmentally regulated GTP binding protein 2##NM_001388|DRG2|1819|developmentally regulated GTP binding protein 2##AK297569|DRG2|1819|developmentally regulated GTP binding protein 2##X80754|DRG2|1819|developmentally regulated GTP binding protein 2##AK295575|DRG2|1819|developmentally regulated GTP binding protein 2##DQ890768|DRG2|1819|developmentally regulated GTP binding protein 2##DQ893929|DRG2|1819|developmentally regulated GTP binding protein 2##BT006976|DRG2|1819|developmentally regulated GTP binding protein 2##AF144094|MYO15A|51168|myosin XVA##NM_016239|MYO15A|51168|myosin XVA##NM_017758|ALKBH5|54890|alkB, alkylation repair homolog 5 (E. coli)	1.362067	0.0	denovo_WM_7:-7:0.876	denovo_WM_7:7:0.374
chr19	2085075	2085222	reg1000070.p1	4.843	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-33915	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-38907	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-43098	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	95	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	11117	-	TSC_hg19_v1_chr19_-_2096297 AL832474	11146	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	0.0	0.0	
chr2	41683570	41683685	reg1009144.p1	4.843	+	Y12878 Y12885 AK291696 BX537482 NM_001112802	-944055	-	Y13032 BX648299 TSC_hg19_v1_chr2_-_40679231	-1004405	-	AF108388 AF108389 M96368 AF128524 NM_001112800 NM_001112801 NM_001252624 NM_021097	-1026196	-	AK124893 NM_001242815	497315	-	TSC_hg19_v1_chr2_+_42275160 NM_138370	591505	+	AB528999 TSC_hg19_v1_chr2_+_42275979	592334	+	Y12878|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y12885|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK291696|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX537482|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112802|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y13032|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX648299|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108388|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108389|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##M96368|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF128524|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112800|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112801|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001252624|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_021097|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)	0.998959	0.0	denovo_WM_7:26:0.357	denovo_WM_7:28:0.355
chr7	73514653	73514833	reg1008384.p1	4.843	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-7226	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	-16409	+	TSC_hg19_v1_chr7_+_73498160 D26309	-16588	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	73898	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	73960	+	NM_014146 NM_032463 NM_032464	109343	+	NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2	0.0	0.0	
chrX	31290695	31290828	reg1010429.p1	4.843	+	CU688550 M92650 TSC_hg19_v1_chrX_-_31285072 BC070078 NM_004015 NM_004016 NM_004017 NM_004018 NM_004019 S42206 BC094758 AK299936 BC028720 S38776	-5727	-	BC069538 BC100768 BC100769 BC100770 BC069069 AF285592 NM_031894	-200598	-	TSC_hg19_v1_chrX_-_30907408 AK297274 NM_152787	-383302	-	NM_004014 S62617	235653	-	L35854 NM_004013 NM_004020 NM_004021 NM_004022 NM_004023	882824	-	NM_004011 NM_004012	1139609	-	M92650|DMD|1756|dystrophin##BC070078|DMD|1756|dystrophin##NM_004015|DMD|1756|dystrophin##NM_004016|DMD|1756|dystrophin##NM_004017|DMD|1756|dystrophin##NM_004018|DMD|1756|dystrophin##NM_004019|DMD|1756|dystrophin##S42206|DMD|1756|dystrophin##BC094758|DMD|1756|dystrophin##AK299936|DMD|1756|dystrophin##BC028720|DMD|1756|dystrophin##S38776|DMD|1756|dystrophin##BC069538|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC100768|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC100769|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC100770|FTHL17|53940|ferritin, heavy polypeptide-like 17##BC069069|FTHL17|53940|ferritin, heavy polypeptide-like 17##AF285592|FTHL17|53940|ferritin, heavy polypeptide-like 17##NM_031894|FTHL17|53940|ferritin, heavy polypeptide-like 17##AK297274|TAB3|257397|TGF-beta activated kinase 1/MAP3K7 binding protein 3##NM_152787|TAB3|257397|TGF-beta activated kinase 1/MAP3K7 binding protein 3##NM_004014|DMD|1756|dystrophin##S62617|DMD|1756|dystrophin##L35854|DMD|1756|dystrophin##NM_004013|DMD|1756|dystrophin##NM_004020|DMD|1756|dystrophin##NM_004021|DMD|1756|dystrophin##NM_004022|DMD|1756|dystrophin##NM_004023|DMD|1756|dystrophin##NM_004011|DMD|1756|dystrophin##NM_004012|DMD|1756|dystrophin	0.0	0.0	
chr19	2266313	2266450	reg1009338.p1	4.842	+	AK056978 NM_144616	-9963	-	NM_000479	-17269	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-29543	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	3139	+	TSC_hg19_v1_chr19_+_2269526 BC042364	3145	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	3161	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.99378	0.0	denovo_WM_7:-47:0.248	denovo_WM_7:-48:0.248	denovo_WM_7:-49:0.248	denovo_WM_7:-50:0.248
chr3	122345742	122345866	reg1008859.p1	4.842	+	BC101701 BC101703 BC143573 AK097916 NM_152615	-11312	+	TSC_hg19_v1_chr3_+_122296496 AK309863 NM_001113523 BX647656 DQ063586	-49324	+	AF307338 AF307339 TSC_hg19_v1_chr3_-_122283426 NM_001146103 NM_031458	-62332	-	TSC_hg19_v1_chr3_+_122399703 NM_017554 AK304269	53894	+	CU680100 CU687786 DQ893066 DQ896319 AB590214 AK096705 BC063629 TSC_hg19_v1_chr3_-_122512667 AF400663 BC011897 AK289410 NM_024610	166799	-	TSC_hg19_v1_chr3_+_122513913 NM_032839 AK027690 AK291176 BC039821 BC033738	168112	+	BC101701|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BC101703|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BC143573|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##AK097916|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##NM_152615|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##NM_001113523|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BX647656|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##DQ063586|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##AF307338|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##AF307339|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_001146103|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_031458|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_017554|PARP14|54625|poly (ADP-ribose) polymerase family, member 14##AK304269|PARP14|54625|poly (ADP-ribose) polymerase family, member 14##DQ893066|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##DQ896319|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AK096705|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##BC063629|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AF400663|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##BC011897|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AK289410|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##NM_024610|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##NM_032839|DIRC2|84925|disrupted in renal carcinoma 2##AK027690|DIRC2|84925|disrupted in renal carcinoma 2##AK291176|DIRC2|84925|disrupted in renal carcinoma 2##BC039821|DIRC2|84925|disrupted in renal carcinoma 2##BC033738|DIRC2|84925|disrupted in renal carcinoma 2	0.0	0.0	
chr5	32583999	32584151	reg1007549.p2	4.842	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-139139	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-139297	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-180722	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	1581	+	NM_001204376 AK300094 AK308301	126675	+	AK290870 NM_000908 NM_001204375 M59305	127413	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.990935	0.0	denovo_WM_7:17:0.954
chr10	17601411	17601577	reg1012009.p2	4.841	+	TSC_hg19_v1_chr10_-_17496346 BC137102 BC137103 BC144472	-105129	-	TSC_hg19_v1_chr10_-_17496178 AB062101 AJ621583 NM_001004470	-105280	-	TSC_hg19_v1_chr10_-_17271978 BC078172	-329508	-	BC027709 TSC_hg19_v1_chr10_-_17659374 AY455942 BC010353 NM_014241	57879	-	NM_003473 TSC_hg19_v1_chr10_+_17686153 BC030586 AK314405 AK303083 U43899 AB590764 CU688920	84736	+	NM_001098844 BC157856	192760	+	BC137102|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC137103|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC144472|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AB062101|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##AJ621583|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##NM_001004470|ST8SIA6|338596|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6##BC027709|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##AY455942|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##BC010353|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_014241|PTPLA|9200|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A##NM_003473|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##BC030586|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK314405|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##AK303083|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##U43899|STAM|8027|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1##NM_001098844|TMEM236|653567|transmembrane protein 236##BC157856|TMEM236|653567|transmembrane protein 236	0.0	0.0	
chr2	30449506	30449686	reg1002503.p1	4.841	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-79720	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	-79763	+	NM_001127399 NM_001127400 NM_001127401 NM_016061 TSC_hg19_v1_chr2_+_30369786	-79826	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	4906	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	220552	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	580697	-	AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127399|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127400|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127401|YPEL5|51646|yippee-like 5 (Drosophila)##NM_016061|YPEL5|51646|yippee-like 5 (Drosophila)##AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13	0.0	0.0	
chr3	113234446	113234553	reg1007760.p1	4.841	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-506	-	TSC_hg19_v1_chr3_-_113233690 AK296160	-813	-	BC101582 BC113553 AK056472 NM_001164496 NM_018338	-74160	-	NM_017699	16718	+	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	180913	-	AK296456 TSC_hg19_v1_chr3_-_113464788	230215	-	AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296160|SPICE1|152185|spindle and centriole associated protein 1##BC101582|WDR52|55779|WD repeat domain 52##BC113553|WDR52|55779|WD repeat domain 52##AK056472|WDR52|55779|WD repeat domain 52##NM_001164496|WDR52|55779|WD repeat domain 52##NM_018338|WDR52|55779|WD repeat domain 52##NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.995016	0.0	
chr6	145942968	145943053	reg1009001.p1	4.841	+	NM_007124 X69086	-1330092	+	TSC_hg19_v1_chr6_+_144607461 AK292506	-1335530	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-1471289	+	AK124757 TSC_hg19_v1_chr6_+_146056061	113024	+	TSC_hg19_v1_chr6_-_146056437 AJ130763 AJ130764	113403	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	113591	-	NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK292506|UTRN|7402|utrophin##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK124757|LOC100507557|100507557|uncharacterized LOC100507557##AJ130763|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AJ130764|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	0.0	0.0	
chr7	120468459	120468639	reg1002977.p1	4.841	+	AK307139 AB028967 NM_012281	-554845	+	NM_019644 AK302407	-2603815	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-2644378	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	29471	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	29611	-	AK000096 NM_019071 NM_198267 TSC_hg19_v1_chr7_+_120590832 AF161419 BC009777 BC093091 AY007790 AK291905 AF074968 BC073865 AF180298 BC062634 BC093689 BC101609 BC143316 BC009776 BC010851 BC146417 BC153171 AB463778	122332	+	AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12##AK000096|ING3|54556|inhibitor of growth family, member 3##NM_019071|ING3|54556|inhibitor of growth family, member 3##NM_198267|ING3|54556|inhibitor of growth family, member 3##AF161419|ING3|54556|inhibitor of growth family, member 3##BC009777|ING3|54556|inhibitor of growth family, member 3##BC093091|ING3|54556|inhibitor of growth family, member 3##AY007790|ING3|54556|inhibitor of growth family, member 3##AK291905|ING3|54556|inhibitor of growth family, member 3##AF074968|ING3|54556|inhibitor of growth family, member 3##BC073865|ING3|54556|inhibitor of growth family, member 3##AF180298|ING3|54556|inhibitor of growth family, member 3##BC062634|ING3|54556|inhibitor of growth family, member 3##BC093689|ING3|54556|inhibitor of growth family, member 3##BC101609|ING3|54556|inhibitor of growth family, member 3##BC143316|ING3|54556|inhibitor of growth family, member 3##BC009776|ING3|54556|inhibitor of growth family, member 3##BC010851|ING3|54556|inhibitor of growth family, member 3##BC146417|ING3|54556|inhibitor of growth family, member 3##BC153171|ING3|54556|inhibitor of growth family, member 3	0.0	0.0	
chr7	17545674	17545769	reg1007163.p1	4.841	+	TSC_hg19_v1_chr7_+_17382906 BC021696	-162815	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-207452	+	AY359065 BC058284 NM_176813	-624117	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	434328	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	434406	-	BC062797 BC005309 M57423 NM_175886	521744	-	BC021696|AHR|196|aryl hydrocarbon receptor##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1	0.0	0.0	
chr1	39460198	39460378	reg1009315.p1	4.840	+	TSC_hg19_v1_chr1_+_39456956 NM_001136275 NM_024595 AK022728 AK092624 AX747634 AK124799 AK126262 AK223276 AK298890 AK303098 BC001498 BC119745 BC119746 AY326465	-3226	+	BC065247 NM_017821 BC013103	-52829	-	AK312811 BC051675 AK123051 NM_030772	-113011	-	NM_001184979 NM_004552 TSC_hg19_v1_chr1_+_39492021 AK312188 AF047434 BC093057 AF020352 AF086268 BC001884	31720	+	AK299010 NM_012090 TSC_hg19_v1_chr1_+_39547088	86800	+	NM_015038	414887	+	NM_001136275|AKIRIN1|79647|akirin 1##NM_024595|AKIRIN1|79647|akirin 1##AK022728|AKIRIN1|79647|akirin 1##AK092624|AKIRIN1|79647|akirin 1##AK124799|AKIRIN1|79647|akirin 1##AK126262|AKIRIN1|79647|akirin 1##AK223276|AKIRIN1|79647|akirin 1##AK298890|AKIRIN1|79647|akirin 1##AK303098|AKIRIN1|79647|akirin 1##BC001498|AKIRIN1|79647|akirin 1##BC119745|AKIRIN1|79647|akirin 1##BC119746|AKIRIN1|79647|akirin 1##AY326465|AKIRIN1|79647|akirin 1##NM_017821|RHBDL2|54933|rhomboid, veinlet-like 2 (Drosophila)##BC013103|RHBDL2|54933|rhomboid, veinlet-like 2 (Drosophila)##AK312811|GJA9|81025|gap junction protein, alpha 9, 59kDa##BC051675|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##AK123051|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##NM_030772|GJA9|81025|gap junction protein, alpha 9, 59kDa##NM_001184979|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_004552|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AK312188|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF047434|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC093057|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF020352|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF086268|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC001884|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AK299010|MACF1|23499|microtubule-actin crosslinking factor 1##NM_012090|MACF1|23499|microtubule-actin crosslinking factor 1##NM_015038|KIAA0754|643314|KIAA0754	2.719773	0.0	denovo_WM_7:64:0.330	denovo_WM_7:65:0.264	denovo_WM_7:82:0.265	denovo_WM_7:83:0.331	denovo_WM_7:-97:0.535
chr16	69221947	69222103	reg1006305.p1	4.840	+	TSC_hg19_v1_chr16_+_69221066 BC031058 AF243385 NM_006750 U40572 BC048215 EU831451 EU831538	-997	+	TSC_hg19_v1_chr16_+_69166551 AK027634 AK027675 AK310104 AB075868 BC009348	-55472	+	TSC_hg19_v1_chr16_+_69166532 BX647265 AK074795	-55498	+	TSC_hg19_v1_chr16_+_69345258 AK315026 AF132747 AF159063 AF255952 NM_013245 BC047932 AF112215 CU690536 EU831747	123307	+	TSC_hg19_v1_chr16_-_69364492 AF322879 BC019912 AF239156 NM_022341	142467	-	TSC_hg19_v1_chr16_-_69373468 BC063831	151412	-	BC031058|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AF243385|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##NM_006750|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##U40572|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##BC048215|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831451|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831538|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AK027634|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK027675|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK310104|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AB075868|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BC009348|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BX647265|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK074795|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK315026|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF132747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF159063|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF255952|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##NM_013245|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##BC047932|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF112215|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##EU831747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF322879|PDF|64146|peptide deformylase (mitochondrial)##BC019912|PDF|64146|peptide deformylase (mitochondrial)##AF239156|PDF|64146|peptide deformylase (mitochondrial)##NM_022341|PDF|64146|peptide deformylase (mitochondrial)##BC063831|COG8|84342|component of oligomeric golgi complex 8	0.996715	0.0	denovo_WM_7:26:0.470	denovo_WM_7:27:0.527
chr19	49996989	49997072	reg1012278.p1	4.840	+	AK056837 AK291120 AK297859 BC070223 BC105605 D28409 NM_012423 TSC_hg19_v1_chr19_+_49990864 X56932 BC032107 BC065236 BC071929 BC000514 BC001675 BC001836 AK222747 BC062537 AB529025 CU687556 EU831455 EU831542 BC013230	-6147	+	TSC_hg19_v1_chr19_+_49990861 AK130605	-6174	+	NM_001204503 U03858 AK301136 TSC_hg19_v1_chr19_+_49977846 HQ258599	-19174	+	NM_001015 TSC_hg19_v1_chr19_+_49999653	2617	+	TSC_hg19_v1_chr19_+_49999686 AK311809 D28407	2654	+	TSC_hg19_v1_chr19_+_49999690 X06617 BC016378 BC070224 DQ893225 DQ896555	2679	+	AK056837|RPL13A|23521|ribosomal protein L13a##AK291120|RPL13A|23521|ribosomal protein L13a##AK297859|RPL13A|23521|ribosomal protein L13a##BC070223|RPL13A|23521|ribosomal protein L13a##BC105605|RPL13A|23521|ribosomal protein L13a##NM_012423|RPL13A|23521|ribosomal protein L13a##X56932|RPL13A|23521|ribosomal protein L13a##BC032107|RPL13A|23521|ribosomal protein L13a##BC065236|RPL13A|23521|ribosomal protein L13a##BC071929|RPL13A|23521|ribosomal protein L13a##BC000514|RPL13A|23521|ribosomal protein L13a##BC001675|RPL13A|23521|ribosomal protein L13a##BC001836|RPL13A|23521|ribosomal protein L13a##AK222747|RPL13A|23521|ribosomal protein L13a##BC062537|RPL13A|23521|ribosomal protein L13a##EU831455|RPL13A|23521|ribosomal protein L13a##EU831542|RPL13A|23521|ribosomal protein L13a##BC013230|RPL13A|23521|ribosomal protein L13a##AK130605|RPL13A|23521|ribosomal protein L13a##NM_001204503|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##U03858|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##AK301136|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##HQ258599|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##NM_001015|RPS11|6205|ribosomal protein S11##AK311809|RPS11|6205|ribosomal protein S11##X06617|RPS11|6205|ribosomal protein S11##BC016378|RPS11|6205|ribosomal protein S11##BC070224|RPS11|6205|ribosomal protein S11##DQ893225|RPS11|6205|ribosomal protein S11##DQ896555|RPS11|6205|ribosomal protein S11	2.985282	0.0	denovo_WM_7:-67:0.978	denovo_WM_7:68:0.494	denovo_WM_7:69:0.494	denovo_WM_7:-83:0.997
chr3	197438888	197439006	reg1011166.p1	4.840	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-84194	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-138746	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-156105	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	24839	-	AK303462 NM_001011537	37476	+	NM_001145642	37620	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	0.043886	0.0	
chr9	69713240	69713354	reg1008687.p1	4.840	+	AL136793 NM_001098805	-331317	+	AF265442 BC069006 AK293173 NM_001085457	-450743	-	NM_001085476	-511094	-	NM_001126334	465517	-	NM_001099279 NM_199244	716433	-	CU688346 TSC_hg19_v1_chr9_-_70490092	776784	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.99699	0.0	denovo_WM_7:10:0.239	denovo_WM_7:11:0.239	denovo_WM_7:12:0.239	denovo_WM_7:13:0.239
chr1	167246338	167246466	reg1009672.p1	4.838	+	TSC_hg19_v1_chr1_+_167190127 NM_001198786 NM_002697 AK302525 AK303201 AK308004 AK091438 S66901 BC052274 X13403	-56345	+	NM_001080426	-182316	+	CU687006 BC074830 BC074876 TSC_hg19_v1_chr1_-_167059615 BC107164 BC107165 AK312833 BC069705 BC069723 BC069745 BC069761 BC069789 NM_005814 U79725	-186707	-	NM_001198783 TSC_hg19_v1_chr1_+_167298306	51896	+	TSC_hg19_v1_chr1_+_167298389 AY113189 BC001664 BC003571	52037	+	AB590419 CU693020 DQ893778 EU176191 X55510 X55511 X55512 BC025703 AK128376 AK313946 J04132 AK223325 NM_000734 NM_198053	241371	-	NM_001198786|POU2F1|5451|POU class 2 homeobox 1##NM_002697|POU2F1|5451|POU class 2 homeobox 1##AK302525|POU2F1|5451|POU class 2 homeobox 1##AK303201|POU2F1|5451|POU class 2 homeobox 1##AK308004|POU2F1|5451|POU class 2 homeobox 1##AK091438|POU2F1|5451|POU class 2 homeobox 1##BC052274|POU2F1|5451|POU class 2 homeobox 1##X13403|POU2F1|5451|POU class 2 homeobox 1##NM_001080426|DUSP27|92235|dual specificity phosphatase 27 (putative)##BC074830|GPA33|10223|glycoprotein A33 (transmembrane)##BC074876|GPA33|10223|glycoprotein A33 (transmembrane)##BC107164|GPA33|10223|glycoprotein A33 (transmembrane)##BC107165|GPA33|10223|glycoprotein A33 (transmembrane)##AK312833|GPA33|10223|glycoprotein A33 (transmembrane)##BC069705|GPA33|10223|glycoprotein A33 (transmembrane)##BC069723|GPA33|10223|glycoprotein A33 (transmembrane)##BC069745|GPA33|10223|glycoprotein A33 (transmembrane)##BC069761|GPA33|10223|glycoprotein A33 (transmembrane)##BC069789|GPA33|10223|glycoprotein A33 (transmembrane)##NM_005814|GPA33|10223|glycoprotein A33 (transmembrane)##U79725|GPA33|10223|glycoprotein A33 (transmembrane)##NM_001198783|POU2F1|5451|POU class 2 homeobox 1##AY113189|POU2F1|5451|POU class 2 homeobox 1##BC001664|POU2F1|5451|POU class 2 homeobox 1##BC003571|POU2F1|5451|POU class 2 homeobox 1##DQ893778|CD247|919|CD247 molecule##EU176191|CD247|919|CD247 molecule##X55510|CD247|919|CD247 molecule##X55511|CD247|919|CD247 molecule##X55512|CD247|919|CD247 molecule##BC025703|CD247|919|CD247 molecule##AK128376|CD247|919|CD247 molecule##AK313946|CD247|919|CD247 molecule##J04132|CD247|919|CD247 molecule##AK223325|CD247|919|CD247 molecule##NM_000734|CD247|919|CD247 molecule##NM_198053|CD247|919|CD247 molecule	1.118611	0.0	denovo_WM_7:65:0.210	denovo_WM_7:79:0.226	denovo_WM_7:80:0.273
chr13	86239698	86239811	reg1008736.p2	4.838	+	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-1783254	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-1783329	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-5324690	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	133685	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	2085115	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	5811150	+	AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5	0.0	0.0	
chr16	29458225	29458405	reg1013309.p1	4.838	+	TSC_hg19_v1_chr16_+_29086310 BC042920 AK225670 AK298442 AK301253	-372010	+	AK307342 NM_001014987 NM_001014988 NM_014387 TSC_hg19_v1_chr16_+_28996403 AJ223280	-461917	+	BC011563 NM_001014989	-462169	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	7536	+	BC022832 NM_001031827 NM_001039182	7969	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	12911	+	AK225670|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK298442|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK301253|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK307342|LAT|27040|linker for activation of T cells##NM_001014987|LAT|27040|linker for activation of T cells##NM_001014988|LAT|27040|linker for activation of T cells##NM_014387|LAT|27040|linker for activation of T cells##AJ223280|LAT|27040|linker for activation of T cells##BC011563|LAT|27040|linker for activation of T cells##NM_001014989|LAT|27040|linker for activation of T cells##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	0.0	0.0	
chr19	7759603	7759783	reg1010260.p1	4.838	+	TSC_hg19_v1_chr19_+_7745742 BC042161 NM_174894 NM_001042461 BC022836	-13938	+	NM_001042462 TSC_hg19_v1_chr19_+_7745726 AK292001	-13976	+	TSC_hg19_v1_chr19_+_7741975 BC104796 BC104798 NM_174918 AF461156 BC035847	-17726	+	TSC_hg19_v1_chr19_-_7764328 NM_001207019	4633	-	BC064417 BC062591 AK223207 BC014108 M14766 TSC_hg19_v1_chr19_-_7767004 AK310707 AK310071 M15059 NM_001220500 NM_002002 X04772	7311	-	AY203939 BC093691 BC093693 BC143309 AY423706 NM_001244856 NM_198492	37323	-	BC042161|TRAPPC5|126003|trafficking protein particle complex 5##NM_174894|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042461|TRAPPC5|126003|trafficking protein particle complex 5##BC022836|TRAPPC5|126003|trafficking protein particle complex 5##NM_001042462|TRAPPC5|126003|trafficking protein particle complex 5##AK292001|TRAPPC5|126003|trafficking protein particle complex 5##BC104796|C19orf59|199675|chromosome 19 open reading frame 59##BC104798|C19orf59|199675|chromosome 19 open reading frame 59##NM_174918|C19orf59|199675|chromosome 19 open reading frame 59##AF461156|C19orf59|199675|chromosome 19 open reading frame 59##BC035847|C19orf59|199675|chromosome 19 open reading frame 59##NM_001207019|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC064417|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC062591|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK223207|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##BC014108|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M14766|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310707|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AK310071|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##M15059|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_001220500|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##NM_002002|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##X04772|FCER2|2208|Fc fragment of IgE, low affinity II, receptor for (CD23)##AY203939|CLEC4G|339390|C-type lectin domain family 4, member G##BC093691|CLEC4G|339390|C-type lectin domain family 4, member G##BC093693|CLEC4G|339390|C-type lectin domain family 4, member G##BC143309|CLEC4G|339390|C-type lectin domain family 4, member G##AY423706|CLEC4G|339390|C-type lectin domain family 4, member G##NM_001244856|CLEC4G|339390|C-type lectin domain family 4, member G##NM_198492|CLEC4G|339390|C-type lectin domain family 4, member G	0.839201	0.0	denovo_WM_7:38:0.768
chr3	116015501	116015681	reg1013063.p1	4.838	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-673172	+	NM_001130064 NM_002045	-673441	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-1149477	-	AK315286 TSC_hg19_v1_chr3_-_116164338	148740	-	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	148782	-	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2737942	-	AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315286|LSAMP|4045|limbic system-associated membrane protein##BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11	1.982484	0.0	denovo_WM_7:-25:0.257	denovo_WM_7:-26:0.667	denovo_WM_7:-41:0.811
chr7	128762832	128762990	reg1002679.p2	4.838	+	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	-67706	-	TSC_hg19_v1_chr7_-_128695168 BC009923	-67763	-	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	-68016	-	BC009989 NM_005631	65801	+	TSC_hg19_v1_chr7_+_128864883 NM_001130720 NM_015328 BC024325 AB020635 AK129958 BC008349	101918	+	TSC_hg19_v1_chr7_+_129007981 NM_001130723	245075	+	AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009989|SMO|6608|smoothened, frizzled family receptor##NM_005631|SMO|6608|smoothened, frizzled family receptor##NM_001130720|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_015328|AHCYL2|23382|adenosylhomocysteinase-like 2##BC024325|AHCYL2|23382|adenosylhomocysteinase-like 2##AB020635|AHCYL2|23382|adenosylhomocysteinase-like 2##BC008349|AHCYL2|23382|adenosylhomocysteinase-like 2##NM_001130723|AHCYL2|23382|adenosylhomocysteinase-like 2	0.0	0.0	
chr8	8151210	8151304	reg1008519.p1	4.838	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-65115	+	AK292586 NM_001193630	-367399	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-399053	+	TSC_hg19_v1_chr8_-_8175862 AF075060	24631	-	AK122582 NM_001080826	87965	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	408441	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	2.118321	0.0	denovo_WM_7:68:0.615	denovo_WM_7:92:0.343	denovo_WM_7:93:0.258
chr10	94137852	94137939	reg1007609.p1	4.837	+	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	-86841	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	-87059	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-134876	-	AK302578 AK093287 AK316407 AX748033 NM_001165946	119598	-	TSC_hg19_v1_chr10_-_94333800 AB527891 AK312810 BC096336 BC096337 BC096338 BC096339 BC036188	195879	-	TSC_hg19_v1_chr10_-_94333845 M21188	195942	-	AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme##AK312810|IDE|3416|insulin-degrading enzyme##BC096336|IDE|3416|insulin-degrading enzyme##BC096337|IDE|3416|insulin-degrading enzyme##BC096338|IDE|3416|insulin-degrading enzyme##BC096339|IDE|3416|insulin-degrading enzyme##BC036188|IDE|3416|insulin-degrading enzyme##M21188|IDE|3416|insulin-degrading enzyme	0.993658	0.0	denovo_WM_7:27:0.239	denovo_WM_7:33:0.562
chr17	8772022	8772187	reg1011484.p1	4.837	+	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	-1120	-	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-69552	-	BC146949 BC146966 BC171861 NM_001128076	-110228	-	AY725853 AF128881 NM_014308	43712	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	96877	-	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	152863	+	BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1	0.064353	0.0	
chr3	133295590	133295694	reg1006764.p1	4.837	+	TSC_hg19_v1_chr3_+_133293256 AK096865 NM_001134423	-2364	+	TSC_hg19_v1_chr3_+_133292835 BC007338	-2848	+	TSC_hg19_v1_chr3_+_133292588 AF103803	-3070	+	BC126209 TSC_hg19_v1_chr3_-_133380768 AB019397 BC151237 D87448 AK302584 BC032633 NM_007027	85056	-	AJ252279 NM_001063 TSC_hg19_v1_chr3_+_133465083	169341	+	BC045772 TSC_hg19_v1_chr3_+_133465111	169469	+	AK096865|CDV3|55573|CDV3 homolog (mouse)##NM_001134423|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC126209|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AB019397|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##BC151237|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##D87448|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AK302584|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##BC032633|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##NM_007027|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AJ252279|TF|7018|transferrin##NM_001063|TF|7018|transferrin##BC045772|TF|7018|transferrin	0.999644	0.0	
chr5	114468223	114468347	reg1007060.p1	4.837	+	BC015371 NM_170775 BC040722	-699036	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	-769824	+	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	-770236	+	TSC_hg19_v1_chr5_-_114505606 AK316422 AK296389	37319	-	AB196558 AJ272269 BC130334 AK125426 BC045164 BC046096 NM_001017397 NM_001017398 NM_018700	47702	-	AY780790 AB590094 TSC_hg19_v1_chr5_-_114598563 NM_005023	130281	-	BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK316422|TRIM36|55521|tripartite motif containing 36##AK296389|TRIM36|55521|tripartite motif containing 36##AB196558|TRIM36|55521|tripartite motif containing 36##AJ272269|TRIM36|55521|tripartite motif containing 36##BC130334|TRIM36|55521|tripartite motif containing 36##AK125426|TRIM36|55521|tripartite motif containing 36##BC045164|TRIM36|55521|tripartite motif containing 36##BC046096|TRIM36|55521|tripartite motif containing 36##NM_001017397|TRIM36|55521|tripartite motif containing 36##NM_001017398|TRIM36|55521|tripartite motif containing 36##NM_018700|TRIM36|55521|tripartite motif containing 36##AY780790|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##NM_005023|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit	0.984886	0.0	
chr10	34093496	34093578	reg1012931.p1	4.836	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-469539	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-469723	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-470084	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	1010614	-	AK310225 AK300491 NM_001198778 NM_001198779	1269675	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	1285735	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.998953	0.0	
chr12	120740283	120740463	reg1007696.p2	4.836	+	NM_012240 TSC_hg19_v1_chr12_+_120740123 BC034736 AF083109 BC109319 BC109320	-231	+	TSC_hg19_v1_chr12_-_120703574 NM_001080855 NM_001243756 NM_002859	-36783	-	TSC_hg19_v1_chr12_-_120703534 AK299486 BC136787 BC136794 BC144410 U14588 AB209034 AK298057 AK314204	-36859	-	AB464016 EU832774 GQ129318 AK311830 BC005386 BC013384 BC106725 BC106726 M21054 NM_000928	25200	-	AB463899 AB012851 NM_002442 TSC_hg19_v1_chr12_-_120806968	66563	-	TSC_hg19_v1_chr12_+_120875920 AK312009 NM_004373 BC107861 BC070186 BC007723 DQ893099 DQ896371	135537	+	NM_012240|SIRT4|23409|sirtuin 4##BC034736|SIRT4|23409|sirtuin 4##AF083109|SIRT4|23409|sirtuin 4##BC109319|SIRT4|23409|sirtuin 4##BC109320|SIRT4|23409|sirtuin 4##NM_001080855|PXN|5829|paxillin##NM_001243756|PXN|5829|paxillin##NM_002859|PXN|5829|paxillin##AK299486|PXN|5829|paxillin##BC136787|PXN|5829|paxillin##BC136794|PXN|5829|paxillin##BC144410|PXN|5829|paxillin##U14588|PXN|5829|paxillin##AB209034|PXN|5829|paxillin##AK298057|PXN|5829|paxillin##AK314204|PXN|5829|paxillin##EU832774|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##GQ129318|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##AK311830|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC005386|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC013384|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC106725|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC106726|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##M21054|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##NM_000928|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##AB012851|MSI1|4440|musashi homolog 1 (Drosophila)##NM_002442|MSI1|4440|musashi homolog 1 (Drosophila)##AK312009|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##NM_004373|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC107861|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC070186|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC007723|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##DQ893099|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##DQ896371|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1	0.0	0.0	
chr7	55578245	55578371	reg1010916.p1	4.836	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	-144736	+	AK095857 NM_018697	-145168	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-491362	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	61732	-	TSC_hg19_v1_chr7_-_55640073 AB097004	61774	-	BC016650 AK314338 TSC_hg19_v1_chr7_-_55640107	61797	-	AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AB097004|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##BC016650|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK314338|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.999928	0.0	
chr20	52547039	52547201	reg1011382.p2	4.835	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-336321	-	AF041259 NM_006526	-347485	-	AK302570 NM_001193421	-745299	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	139942	-	AK315220 NM_003657	140183	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	243400	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr2	38079014	38079113	reg1007483.p1	4.835	+	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	-179674	-	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	-180284	-	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-507250	+	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	73369	+	BC024243 NM_001170792	76838	+	NM_001170793 NM_144713 AK057516 AF435956	98537	+	AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1##BC024243|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170792|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170793|FAM82A1|151393|family with sequence similarity 82, member A1##NM_144713|FAM82A1|151393|family with sequence similarity 82, member A1##AK057516|FAM82A1|151393|family with sequence similarity 82, member A1##AF435956|FAM82A1|151393|family with sequence similarity 82, member A1	0.381219	0.0	
chr7	87849345	87849525	reg1002402.p1	4.835	+	TSC_hg19_v1_chr7_-_87849391 AK129770 AK310366 NM_003130	-30	-	AB464235 L12387 TSC_hg19_v1_chr7_-_87849352 AK295225 BC011025 M32886	-83	-	TSC_hg19_v1_chr7_+_87563605 BC036029 BC092465 NM_004194 NM_016351 NM_021721 NM_021722 NM_021723 AK291010 BC062433 BC125118 BC125117 AF073291 AF155381 AF155382	-285852	+	TSC_hg19_v1_chr7_-_87856292 AK296601 NM_198901	6859	-	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	86779	-	BC140826 BC140829 AK056672 AY295769 NM_181646	539281	+	AK129770|SRI|6717|sorcin##AK310366|SRI|6717|sorcin##NM_003130|SRI|6717|sorcin##L12387|SRI|6717|sorcin##AK295225|SRI|6717|sorcin##BC011025|SRI|6717|sorcin##M32886|SRI|6717|sorcin##BC036029|ADAM22|53616|ADAM metallopeptidase domain 22##BC092465|ADAM22|53616|ADAM metallopeptidase domain 22##NM_004194|ADAM22|53616|ADAM metallopeptidase domain 22##NM_016351|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021721|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021722|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021723|ADAM22|53616|ADAM metallopeptidase domain 22##AK291010|ADAM22|53616|ADAM metallopeptidase domain 22##BC062433|ADAM22|53616|ADAM metallopeptidase domain 22##BC125118|ADAM22|53616|ADAM metallopeptidase domain 22##BC125117|ADAM22|53616|ADAM metallopeptidase domain 22##AF073291|ADAM22|53616|ADAM metallopeptidase domain 22##AF155381|ADAM22|53616|ADAM metallopeptidase domain 22##AF155382|ADAM22|53616|ADAM metallopeptidase domain 22##AK296601|SRI|6717|sorcin##NM_198901|SRI|6717|sorcin##BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B	0.0	0.112499	
chrX	48755948	48756034	reg1007398.p1	4.835	+	NM_001167992 AJ973593 AJ973594 AJ973595 AJ973596 AJ973597 AJ973598 AJ973599 AJ973600 AJ973602 AJ973603 AJ973604 AJ973605 AJ973606 AJ973607 AJ973601 AB041833 AB041834 AB041835 AB041836 AB385557 CU680304 DQ892221 DQ894883	-208	+	AJ005893 NM_001032384 NM_005710	-455	+	AF034790 NM_001167947 NM_005834 TSC_hg19_v1_chrX_-_48755431	-561	-	CR450287 D88146 NM_005660 AK225508 AK290284 AK293415 AK293419 AK298484 AK299748 TSC_hg19_v1_chrX_-_48768926 BC035747 NM_001032289 AK292816	12940	-	D84454 NM_001042498	13243	-	U77735 BC018111 AK312745 TSC_hg19_v1_chrX_-_48776302 AK290931 NM_006875	20356	-	NM_001167992|PQBP1|10084|polyglutamine binding protein 1##AJ973593|PQBP1|10084|polyglutamine binding protein 1##AJ973594|PQBP1|10084|polyglutamine binding protein 1##AJ973595|PQBP1|10084|polyglutamine binding protein 1##AJ973596|PQBP1|10084|polyglutamine binding protein 1##AJ973597|PQBP1|10084|polyglutamine binding protein 1##AJ973598|PQBP1|10084|polyglutamine binding protein 1##AJ973599|PQBP1|10084|polyglutamine binding protein 1##AJ973600|PQBP1|10084|polyglutamine binding protein 1##AJ973602|PQBP1|10084|polyglutamine binding protein 1##AJ973603|PQBP1|10084|polyglutamine binding protein 1##AJ973604|PQBP1|10084|polyglutamine binding protein 1##AJ973605|PQBP1|10084|polyglutamine binding protein 1##AJ973606|PQBP1|10084|polyglutamine binding protein 1##AJ973607|PQBP1|10084|polyglutamine binding protein 1##AJ973601|PQBP1|10084|polyglutamine binding protein 1##AB041833|PQBP1|10084|polyglutamine binding protein 1##AB041834|PQBP1|10084|polyglutamine binding protein 1##AB041835|PQBP1|10084|polyglutamine binding protein 1##AB041836|PQBP1|10084|polyglutamine binding protein 1##DQ892221|PQBP1|10084|polyglutamine binding protein 1##DQ894883|PQBP1|10084|polyglutamine binding protein 1##AJ005893|PQBP1|10084|polyglutamine binding protein 1##NM_001032384|PQBP1|10084|polyglutamine binding protein 1##NM_005710|PQBP1|10084|polyglutamine binding protein 1##AF034790|TIMM17B|10245|translocase of inner mitochondrial membrane 17 homolog B (yeast)##NM_001167947|TIMM17B|10245|translocase of inner mitochondrial membrane 17 homolog B (yeast)##NM_005834|TIMM17B|10245|translocase of inner mitochondrial membrane 17 homolog B (yeast)##CR450287|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D88146|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_005660|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK225508|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK290284|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293415|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293419|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK298484|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK299748|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC035747|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001032289|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK292816|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D84454|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001042498|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##U77735|PIM2|11040|pim-2 oncogene##BC018111|PIM2|11040|pim-2 oncogene##AK312745|PIM2|11040|pim-2 oncogene##AK290931|PIM2|11040|pim-2 oncogene##NM_006875|PIM2|11040|pim-2 oncogene	1.99336	0.0	denovo_WM_7:85:0.358	denovo_WM_7:86:0.269
chr1	167774662	167774771	reg1010460.p1	4.834	+	TSC_hg19_v1_chr1_+_167691226 NM_001146191 NM_003953 NM_024569 AK297112 AK075334 AK307250 AK291249 AY359019 AF181660 AF478447 BC000984 BC007881 AF095727 AF087020 AF092425 AF095726 AK315546 AB527648 AF239756 BT019542 CR542160 HQ447352	-83388	+	TSC_hg19_v1_chr1_+_167599557 AL137762 BC101536 BC101562 BC143428	-175147	+	AF545852 TSC_hg19_v1_chr1_+_167599495 NM_052862 AK130798	-175303	+	BC117366 BC117372 AF176813 AF299350 AF331033 AK310395 AK310531 AK302884 NM_001167749 NM_018417	108631	-	AB528078 AM393085 CR407632 CR533473 TSC_hg19_v1_chr1_-_167905197 BC104157 BC104158	130426	-	TSC_hg19_v1_chr1_-_167905234 AK311913 AL110297 AK290126 AK307189	130538	-	NM_001146191|MPZL1|9019|myelin protein zero-like 1##NM_003953|MPZL1|9019|myelin protein zero-like 1##NM_024569|MPZL1|9019|myelin protein zero-like 1##AK297112|MPZL1|9019|myelin protein zero-like 1##AK075334|MPZL1|9019|myelin protein zero-like 1##AK307250|MPZL1|9019|myelin protein zero-like 1##AK291249|MPZL1|9019|myelin protein zero-like 1##AY359019|MPZL1|9019|myelin protein zero-like 1##AF181660|MPZL1|9019|myelin protein zero-like 1##AF478447|MPZL1|9019|myelin protein zero-like 1##BC000984|MPZL1|9019|myelin protein zero-like 1##BC007881|MPZL1|9019|myelin protein zero-like 1##AF095727|MPZL1|9019|myelin protein zero-like 1##AF087020|MPZL1|9019|myelin protein zero-like 1##AF092425|MPZL1|9019|myelin protein zero-like 1##AF095726|MPZL1|9019|myelin protein zero-like 1##AK315546|MPZL1|9019|myelin protein zero-like 1##AF239756|MPZL1|9019|myelin protein zero-like 1##BT019542|MPZL1|9019|myelin protein zero-like 1##CR542160|MPZL1|9019|myelin protein zero-like 1##HQ447352|MPZL1|9019|myelin protein zero-like 1##AL137762|RCSD1|92241|RCSD domain containing 1##BC101536|RCSD1|92241|RCSD domain containing 1##BC101562|RCSD1|92241|RCSD domain containing 1##BC143428|RCSD1|92241|RCSD domain containing 1##AF545852|RCSD1|92241|RCSD domain containing 1##NM_052862|RCSD1|92241|RCSD domain containing 1##BC117366|ADCY10|55811|adenylate cyclase 10 (soluble)##BC117372|ADCY10|55811|adenylate cyclase 10 (soluble)##AF176813|ADCY10|55811|adenylate cyclase 10 (soluble)##AF299350|ADCY10|55811|adenylate cyclase 10 (soluble)##AF331033|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310395|ADCY10|55811|adenylate cyclase 10 (soluble)##AK310531|ADCY10|55811|adenylate cyclase 10 (soluble)##AK302884|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_001167749|ADCY10|55811|adenylate cyclase 10 (soluble)##NM_018417|ADCY10|55811|adenylate cyclase 10 (soluble)##AM393085|BRP44|25874|brain protein 44##CR407632|BRP44|25874|brain protein 44##CR533473|BRP44|25874|brain protein 44##BC104157|BRP44|25874|brain protein 44##BC104158|BRP44|25874|brain protein 44##AK311913|BRP44|25874|brain protein 44##AL110297|BRP44|25874|brain protein 44##AK290126|BRP44|25874|brain protein 44	0.568889	0.0	denovo_WM_7:18:0.222
chr2	231464666	231464806	reg1014341.p1	4.834	+	AK091898 NM_001206704	-183266	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-183780	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-183817	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	112810	+	TSC_hg19_v1_chr2_+_231577633 BC020570	112908	+	AK292382 NM_001130849 NM_001130850 AK315692	113542	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.0	0.0	
chr3	45595956	45596059	reg1008852.p1	4.834	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-165943	+	TSC_hg19_v1_chr3_-_45267804 NM_015444	-328182	-	AB078417 AF438313 TSC_hg19_v1_chr3_-_45267780 BC057390	-328299	-	TSC_hg19_v1_chr3_+_45635397 M80651	39578	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	40264	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	134726	+	AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015444|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##AB078417|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##AF438313|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##BC057390|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##M80651|LIMD1|8994|LIM domains containing 1##BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	0.0	0.0	
chr10	105536154	105536246	reg1010459.p2	4.833	+	TSC_hg19_v1_chr10_-_105452931 AK294736 AK295314 AK315983 AK295660	-83250	-	TSC_hg19_v1_chr10_-_105437934 AK304828	-98279	-	TSC_hg19_v1_chr10_-_105421464 AK294454	-114751	-	TSC_hg19_v1_chr10_-_105615306 NM_014631	79070	-	TSC_hg19_v1_chr10_-_105677943 BC017400	141729	-	TSC_hg19_v1_chr10_-_105677986 NM_024928	141815	-	AK294736|SH3PXD2A|9644|SH3 and PX domains 2A##AK295314|SH3PXD2A|9644|SH3 and PX domains 2A##AK315983|SH3PXD2A|9644|SH3 and PX domains 2A##AK295660|SH3PXD2A|9644|SH3 and PX domains 2A##AK304828|SH3PXD2A|9644|SH3 and PX domains 2A##AK294454|SH3PXD2A|9644|SH3 and PX domains 2A##NM_014631|SH3PXD2A|9644|SH3 and PX domains 2A##BC017400|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1##NM_024928|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1	0.999132	0.0	denovo_WM_7:-35:0.239	denovo_WM_7:-36:0.239	denovo_WM_7:-37:0.239	denovo_WM_7:-38:0.239
chr11	117555132	117555267	reg1007084.p2	4.833	+	AK302991 BC000602 TSC_hg19_v1_chr11_+_117198865 AK303067	-356368	+	TSC_hg19_v1_chr11_+_117198594 BX648682 NM_014956 BC054015	-356615	+	TSC_hg19_v1_chr11_-_117186973 AF324837 AB032975 AF201468 AF190725 BC036084 AK075049 BC065492 NM_012104 NM_138971 NM_138972 NM_138973	-368219	-	AB385430 AF304304 AF304305 TSC_hg19_v1_chr11_-_117667909 AF334384 AB032958	112654	-	TSC_hg19_v1_chr11_-_117667943 AF491813 NM_020693	112760	-	DQ786191 U50743 AF241236 AK296195 TSC_hg19_v1_chr11_-_117695460 AK096069 BC013289 NM_001680	140235	-	AK302991|CEP164|22897|centrosomal protein 164kDa##BC000602|CEP164|22897|centrosomal protein 164kDa##AK303067|CEP164|22897|centrosomal protein 164kDa##BX648682|CEP164|22897|centrosomal protein 164kDa##NM_014956|CEP164|22897|centrosomal protein 164kDa##BC054015|CEP164|22897|centrosomal protein 164kDa##AF324837|BACE1|23621|beta-site APP-cleaving enzyme 1##AB032975|BACE1|23621|beta-site APP-cleaving enzyme 1##AF201468|BACE1|23621|beta-site APP-cleaving enzyme 1##AF190725|BACE1|23621|beta-site APP-cleaving enzyme 1##BC036084|BACE1|23621|beta-site APP-cleaving enzyme 1##AK075049|BACE1|23621|beta-site APP-cleaving enzyme 1##BC065492|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_012104|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138971|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138972|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138973|BACE1|23621|beta-site APP-cleaving enzyme 1##AF304304|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF304305|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF334384|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AB032958|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF491813|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##NM_020693|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##DQ786191|FXYD2|486|FXYD domain containing ion transport regulator 2##U50743|FXYD2|486|FXYD domain containing ion transport regulator 2##AF241236|FXYD2|486|FXYD domain containing ion transport regulator 2##AK096069|FXYD2|486|FXYD domain containing ion transport regulator 2##BC013289|FXYD2|486|FXYD domain containing ion transport regulator 2##NM_001680|FXYD2|486|FXYD domain containing ion transport regulator 2	1.983302	0.0	denovo_WM_7:-22:0.248	denovo_WM_7:-25:0.614	denovo_WM_7:-40:0.632
chr11	14322411	14322528	reg1011086.p1	4.833	+	TSC_hg19_v1_chr11_+_13984277 NM_006108 AK291780 AK074803 BC136513 BC136563 BC006262 AB051390	-338186	+	AY423606 BC017377 TSC_hg19_v1_chr11_+_13690267 AY600449	-632202	+	TSC_hg19_v1_chr11_+_13690255 AK315527 AK026381	-632216	+	AK309550 AK309683 NM_001177315 NM_001102669	57582	-	TSC_hg19_v1_chr11_-_14380730 BC013106 AK299606 AK313976 NM_012250	58208	-	AK300103 NM_001177314	63582	-	NM_006108|SPON1|10418|spondin 1, extracellular matrix protein##AK291780|SPON1|10418|spondin 1, extracellular matrix protein##AK074803|SPON1|10418|spondin 1, extracellular matrix protein##BC136513|SPON1|10418|spondin 1, extracellular matrix protein##BC136563|SPON1|10418|spondin 1, extracellular matrix protein##AB051390|SPON1|10418|spondin 1, extracellular matrix protein##AY423606|FAR1|84188|fatty acyl CoA reductase 1##BC017377|FAR1|84188|fatty acyl CoA reductase 1##AY600449|FAR1|84188|fatty acyl CoA reductase 1##AK315527|FAR1|84188|fatty acyl CoA reductase 1##AK026381|FAR1|84188|fatty acyl CoA reductase 1##AK309550|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK309683|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177315|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001102669|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##BC013106|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK299606|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK313976|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_012250|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK300103|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177314|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2	0.0	0.0	
chr19	1557884	1558035	reg1010943.p1	4.833	+	AK054808 NM_001243079	-33887	+	BC040620 NM_213604	-44772	-	TSC_hg19_v1_chr19_-_1513019 AK302020 AK131571	-44945	-	DQ225272 DQ225273 TSC_hg19_v1_chr19_-_1567994 AY950680 NM_001174118 NM_203304	10006	-	AB528617 AF072247 NM_003926 TSC_hg19_v1_chr19_-_1592683	34699	-	BC009372 TSC_hg19_v1_chr19_-_1592751 AK290882 BC043619	34769	-	AK054808|PLK5|126520|polo-like kinase 5##NM_001243079|PLK5|126520|polo-like kinase 5##BC040620|ADAMTSL5|339366|ADAMTS-like 5##NM_213604|ADAMTSL5|339366|ADAMTS-like 5##AK302020|ADAMTSL5|339366|ADAMTS-like 5##AK131571|ADAMTSL5|339366|ADAMTS-like 5##DQ225272|MEX3D|399664|mex-3 homolog D (C. elegans)##DQ225273|MEX3D|399664|mex-3 homolog D (C. elegans)##AY950680|MEX3D|399664|mex-3 homolog D (C. elegans)##NM_001174118|MEX3D|399664|mex-3 homolog D (C. elegans)##NM_203304|MEX3D|399664|mex-3 homolog D (C. elegans)##AF072247|MBD3|53615|methyl-CpG binding domain protein 3##NM_003926|MBD3|53615|methyl-CpG binding domain protein 3##BC009372|MBD3|53615|methyl-CpG binding domain protein 3##AK290882|MBD3|53615|methyl-CpG binding domain protein 3##BC043619|MBD3|53615|methyl-CpG binding domain protein 3	2.987727	0.0	
chr21	45283523	45283703	reg1008136.p1	4.833	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-74128	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	-74198	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-87384	-	TSC_hg19_v1_chr21_+_45285029 AY358704	1447	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	1510	+	AK300562 NM_001037553	61665	+	AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.0	0.0	
chr8	124835782	124835884	reg1009200.p2	4.833	+	TSC_hg19_v1_chr8_+_124780758 DQ228141 NM_144963 BC144630	-55020	+	TSC_hg19_v1_chr8_+_124780681 AK300603 BC030520	-55143	+	CR541838 BC125158 AJ306450 Z11502 NM_001003954 NM_004306 AK290281 AK223374	-86214	-	AB196633 NM_001039112	28393	+	BC101502 BC101506 AK057332 TSC_hg19_v1_chr8_-_125183771	347905	-	TSC_hg19_v1_chr8_-_125384925 BC041379 NM_194291	549119	-	DQ228141|FAM91A1|157769|family with sequence similarity 91, member A1##NM_144963|FAM91A1|157769|family with sequence similarity 91, member A1##BC144630|FAM91A1|157769|family with sequence similarity 91, member A1##AK300603|FAM91A1|157769|family with sequence similarity 91, member A1##BC030520|FAM91A1|157769|family with sequence similarity 91, member A1##CR541838|ANXA13|312|annexin A13##BC125158|ANXA13|312|annexin A13##AJ306450|ANXA13|312|annexin A13##Z11502|ANXA13|312|annexin A13##NM_001003954|ANXA13|312|annexin A13##NM_004306|ANXA13|312|annexin A13##AK290281|ANXA13|312|annexin A13##AK223374|ANXA13|312|annexin A13##AB196633|FER1L6|654463|fer-1-like 6 (C. elegans)##NM_001039112|FER1L6|654463|fer-1-like 6 (C. elegans)##BC101502|C8orf78|157376|chromosome 8 open reading frame 78##BC101506|C8orf78|157376|chromosome 8 open reading frame 78##AK057332|C8orf78|157376|chromosome 8 open reading frame 78##BC041379|TMEM65|157378|transmembrane protein 65##NM_194291|TMEM65|157378|transmembrane protein 65	1.979718	0.217342	CTCF.p2:-4:0.217	denovo_WM_7:18:0.281	denovo_WM_7:19:0.522	denovo_WM_7:34:0.575
chr11	47236246	47236365	reg1009538.p2	4.832	+	BC007914 AF149825 TSC_hg19_v1_chr11_-_47207959 AF242530 AK300658 BC011889 NM_001184974 NM_016223	-28323	-	AK300968 AK000577 NM_001184975	-28877	-	NM_001242832 NM_032389	-37630	-	NM_000107 U18300 TSC_hg19_v1_chr11_+_47236524 AK313262 BC050455 AK091640 AX747106 BC000093 AB527602 AB107037 AB107038 AB107039 AB107040 BT007139 CU674030 DQ890719	284	+	AK311590 NM_001251934 NM_001251935 AK302132	33550	+	AK298439 TSC_hg19_v1_chr11_-_47270266	33917	-	BC007914|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF149825|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AF242530|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300658|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##BC011889|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184974|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_016223|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK300968|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##AK000577|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001184975|PACSIN3|29763|protein kinase C and casein kinase substrate in neurons 3##NM_001242832|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_032389|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_000107|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##U18300|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK313262|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC050455|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK091640|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BC000093|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107037|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107038|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107039|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AB107040|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##BT007139|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##DQ890719|DDB2|1643|damage-specific DNA binding protein 2, 48kDa##AK311590|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##NM_001251934|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##NM_001251935|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##AK302132|NR1H3|10062|nuclear receptor subfamily 1, group H, member 3##AK298439|ACP2|53|acid phosphatase 2, lysosomal	0.999977	0.0	denovo_WM_7:25:0.457	denovo_WM_7:26:0.457
chr15	102286859	102287039	reg1010023.p1	4.832	+	TSC_hg19_v1_chr15_-_102264638 BC132671 BC136315 BC143943 AK056653 AX721055 NM_152334	-22294	-	TSC_hg19_v1_chr15_-_102192580 BC006150 BC008873 AF353992 AK315584 AK297048 AK026257 AK296553 NM_025141 NM_078474	-94483	-	TSC_hg19_v1_chr15_-_102030140 NM_002570 NM_138319 NM_138320 NM_138321 NM_138322 NM_138323 NM_138324 NM_138325	-256787	-	BC137002 BC137003 NM_001005326	58962	+	BC137064 BC137065 NM_001001674	71428	+	AY792621 NM_001195021	95372	+	BC132671|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC136315|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC143943|TARSL2|123283|threonyl-tRNA synthetase-like 2##AK056653|TARSL2|123283|threonyl-tRNA synthetase-like 2##NM_152334|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC006150|TM2D3|80213|TM2 domain containing 3##BC008873|TM2D3|80213|TM2 domain containing 3##AF353992|TM2D3|80213|TM2 domain containing 3##AK315584|TM2D3|80213|TM2 domain containing 3##AK297048|TM2D3|80213|TM2 domain containing 3##AK026257|TM2D3|80213|TM2 domain containing 3##AK296553|TM2D3|80213|TM2 domain containing 3##NM_025141|TM2D3|80213|TM2 domain containing 3##NM_078474|TM2D3|80213|TM2 domain containing 3##NM_002570|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138319|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138320|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138321|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138322|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138323|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138324|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138325|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##BC137002|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##BC137003|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##NM_001005326|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##BC137064|OR4F15|390649|olfactory receptor, family 4, subfamily F, member 15##BC137065|OR4F15|390649|olfactory receptor, family 4, subfamily F, member 15##NM_001001674|OR4F15|390649|olfactory receptor, family 4, subfamily F, member 15##AY792621|GPCRLTM7|100272148|putative olfactory receptor GPCRLTM7##NM_001195021|GPCRLTM7|100272148|putative olfactory receptor GPCRLTM7	0.990887	0.0	denovo_WM_7:-74:0.777
chr15	37264973	37265088	reg1011636.p1	4.832	+	NM_032499	-332225	+	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	-393131	+	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	-1426644	-	CU674744 EU831754 EU831831 TSC_hg19_v1_chr15_-_37390403 AK294411 AK311546 AK056038 NM_172315	125436	-	AK056620 NM_172316 AB463111 CU690674 EU446635 EU831824 AK055936	126609	-	TSC_hg19_v1_chr15_-_37391935 AF178948 AF179896 AF179897 AF179898 AF179899	126889	-	NM_032499|C15orf41|84529|chromosome 15 open reading frame 41##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##EU831754|MEIS2|4212|Meis homeobox 2##EU831831|MEIS2|4212|Meis homeobox 2##AK294411|MEIS2|4212|Meis homeobox 2##AK311546|MEIS2|4212|Meis homeobox 2##AK056038|MEIS2|4212|Meis homeobox 2##NM_172315|MEIS2|4212|Meis homeobox 2##AK056620|MEIS2|4212|Meis homeobox 2##NM_172316|MEIS2|4212|Meis homeobox 2##EU446635|MEIS2|4212|Meis homeobox 2##EU831824|MEIS2|4212|Meis homeobox 2##AK055936|MEIS2|4212|Meis homeobox 2##AF178948|MEIS2|4212|Meis homeobox 2##AF179896|MEIS2|4212|Meis homeobox 2##AF179897|MEIS2|4212|Meis homeobox 2##AF179898|MEIS2|4212|Meis homeobox 2##AF179899|MEIS2|4212|Meis homeobox 2	0.05026	0.0	
chr18	19323546	19323642	reg1009074.p1	4.832	+	AY149908 BC110581 BC110582 NM_020774	-2050	+	TSC_hg19_v1_chr18_+_19321288 AY147849	-2311	+	TSC_hg19_v1_chr18_-_19284743 NM_138340	-38843	-	CR749635 TSC_hg19_v1_chr18_+_19353654	30053	+	AK123079 TSC_hg19_v1_chr18_-_19749029	425392	-	X95701 BC027891 NM_005257 TSC_hg19_v1_chr18_+_19749549	425882	+	AY149908|MIB1|57534|mindbomb homolog 1 (Drosophila)##BC110581|MIB1|57534|mindbomb homolog 1 (Drosophila)##BC110582|MIB1|57534|mindbomb homolog 1 (Drosophila)##NM_020774|MIB1|57534|mindbomb homolog 1 (Drosophila)##AY147849|MIB1|57534|mindbomb homolog 1 (Drosophila)##NM_138340|ABHD3|171586|abhydrolase domain containing 3##CR749635|MIB1|57534|mindbomb homolog 1 (Drosophila)##AK123079|LOC100128893|100128893|uncharacterized LOC100128893##X95701|GATA6|2627|GATA binding protein 6##BC027891|GATA6|2627|GATA binding protein 6##NM_005257|GATA6|2627|GATA binding protein 6	0.498979	0.0	denovo_WM_7:6:0.412
chr2	136711859	136712020	reg1011545.p1	4.832	+	AK299236 TSC_hg19_v1_chr2_-_136634035 NM_005915 AK303455	-77908	-	CU689360 BC020268 BC032374 TSC_hg19_v1_chr2_-_136633997 U46838 AK312575 BC008774 D84557	-77974	-	NM_002299 X07994	-117190	-	BT006710 CU674308 DQ890741 DQ893912 TSC_hg19_v1_chr2_-_136743053 CR749809 BC107749 AY762100	31116	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	31190	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	31277	-	AK299236|MCM6|4175|minichromosome maintenance complex component 6##NM_005915|MCM6|4175|minichromosome maintenance complex component 6##AK303455|MCM6|4175|minichromosome maintenance complex component 6##BC020268|MCM6|4175|minichromosome maintenance complex component 6##BC032374|MCM6|4175|minichromosome maintenance complex component 6##U46838|MCM6|4175|minichromosome maintenance complex component 6##AK312575|MCM6|4175|minichromosome maintenance complex component 6##BC008774|MCM6|4175|minichromosome maintenance complex component 6##D84557|MCM6|4175|minichromosome maintenance complex component 6##NM_002299|LCT|3938|lactase##X07994|LCT|3938|lactase##BT006710|DARS|1615|aspartyl-tRNA synthetase##DQ890741|DARS|1615|aspartyl-tRNA synthetase##DQ893912|DARS|1615|aspartyl-tRNA synthetase##CR749809|DARS|1615|aspartyl-tRNA synthetase##BC107749|DARS|1615|aspartyl-tRNA synthetase##AY762100|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase	2.171406	0.0	denovo_WM_7:24:0.829	denovo_WM_7:-66:0.209
chr7	81469583	81469674	reg1007660.p1	4.832	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-70254	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-920954	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-921194	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	603218	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	603452	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	1322241	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	0.996994	0.0	denovo_WM_7:19:0.861
chrX	49607364	49607466	reg1007713.p1	4.832	+	NM_007003 AK312039 AF275258 AJ005894 AK092503 AX747575	-13488	+	BC004861 AF058989 NM_003785	-146834	-	NM_001040663 NM_001468 BC005363 BC036094 BC069470	-243776	+	NM_001145073	37054	+	TSC_hg19_v1_chrX_+_49687274 AK092049 NM_001127898 NM_001127899 AK056560	79831	+	NM_000084 AK308089 TSC_hg19_v1_chrX_+_49832243 AK290940	224830	+	NM_007003|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK312039|PAGE4|9506|P antigen family, member 4 (prostate associated)##AF275258|PAGE4|9506|P antigen family, member 4 (prostate associated)##AJ005894|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK092503|PAGE4|9506|P antigen family, member 4 (prostate associated)##BC004861|PAGE1|8712|P antigen family, member 1 (prostate associated)##AF058989|PAGE1|8712|P antigen family, member 1 (prostate associated)##NM_003785|PAGE1|8712|P antigen family, member 1 (prostate associated)##NM_001040663|GAGE1|2543|G antigen 1##NM_001468|GAGE1|2543|G antigen 1##BC005363|GAGE1|2543|G antigen 1##BC036094|GAGE1|2543|G antigen 1##BC069470|GAGE1|2543|G antigen 1##NM_001145073|USP27X|389856|ubiquitin specific peptidase 27, X-linked##AK092049|CLCN5|1184|chloride channel 5##NM_001127898|CLCN5|1184|chloride channel 5##NM_001127899|CLCN5|1184|chloride channel 5##AK056560|CLCN5|1184|chloride channel 5##NM_000084|CLCN5|1184|chloride channel 5##AK308089|CLCN5|1184|chloride channel 5##AK290940|CLCN5|1184|chloride channel 5	0.025022	0.054769	
chr10	73592814	73592930	reg1009807.p2	4.831	+	AY563161 AY563162 NM_001171935 NM_001171936	-21233	+	AY563165 AY563166 NM_001171933 NM_001171934	-37345	+	CU676566 BC020568 AY265805 TSC_hg19_v1_chr10_-_73533278 EF506490 AK024449 BC111048 AY358379 NM_022153	-59566	-	TSC_hg19_v1_chr10_-_73611004 BT006849 CR456746 CU678650 DQ893009 DQ896255 M60255 M60257 M60258 AB527305 BC001503 J03015 M32221 D00422 M81355 AB209776 BC004275 BC007612	18109	-	AK223290 AK293672 AK307721 TSC_hg19_v1_chr10_-_73611007 AK129790 J03077 AK057878 BC091483	18145	-	AK299184 TSC_hg19_v1_chr10_-_73611043	18171	-	AY563161|CDH23|64072|cadherin-related 23##AY563162|CDH23|64072|cadherin-related 23##NM_001171935|CDH23|64072|cadherin-related 23##NM_001171936|CDH23|64072|cadherin-related 23##AY563165|CDH23|64072|cadherin-related 23##AY563166|CDH23|64072|cadherin-related 23##NM_001171933|CDH23|64072|cadherin-related 23##NM_001171934|CDH23|64072|cadherin-related 23##BC020568|C10orf54|64115|chromosome 10 open reading frame 54##AY265805|C10orf54|64115|chromosome 10 open reading frame 54##EF506490|C10orf54|64115|chromosome 10 open reading frame 54##AK024449|C10orf54|64115|chromosome 10 open reading frame 54##BC111048|C10orf54|64115|chromosome 10 open reading frame 54##AY358379|C10orf54|64115|chromosome 10 open reading frame 54##NM_022153|C10orf54|64115|chromosome 10 open reading frame 54##BT006849|PSAP|5660|prosaposin##CR456746|PSAP|5660|prosaposin##DQ893009|PSAP|5660|prosaposin##DQ896255|PSAP|5660|prosaposin##M60255|PSAP|5660|prosaposin##M60257|PSAP|5660|prosaposin##M60258|PSAP|5660|prosaposin##BC001503|PSAP|5660|prosaposin##J03015|PSAP|5660|prosaposin##M32221|PSAP|5660|prosaposin##D00422|PSAP|5660|prosaposin##M81355|PSAP|5660|prosaposin##AB209776|PSAP|5660|prosaposin##BC004275|PSAP|5660|prosaposin##BC007612|PSAP|5660|prosaposin##AK223290|PSAP|5660|prosaposin##AK293672|PSAP|5660|prosaposin##AK307721|PSAP|5660|prosaposin##AK129790|PSAP|5660|prosaposin##J03077|PSAP|5660|prosaposin##AK057878|PSAP|5660|prosaposin##BC091483|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin	1.329868	0.0	denovo_WM_7:-74:0.354	denovo_WM_7:-90:0.950
chr12	57873882	57874047	reg1011448.p2	4.831	+	AK304107 AB051853 NM_032496	-334	-	TSC_hg19_v1_chr12_-_57873391 AK092763 AX747713 NM_001080157	-570	-	AK301095 AK057573 AB030239 NM_001080156	-2285	-	NM_004990 TSC_hg19_v1_chr12_+_57881850 BC065187 AK293945 AK303349 D84224	7828	+	AK092986 AK222767 AX747839 TSC_hg19_v1_chr12_+_57881853 AK290857 BC011639 X94754 BC002384 BC006328 BC011849 AB590802 BT007338 BC015011	7915	+	TSC_hg19_v1_chr12_-_57914295 AK316581 BC003637 BC107859 S40706 AY461580 NM_001195053 NM_001195054 NM_001195055 NM_001195056 NM_001195057 NM_004083	40330	-	AK304107|ARHGAP9|64333|Rho GTPase activating protein 9##AB051853|ARHGAP9|64333|Rho GTPase activating protein 9##NM_032496|ARHGAP9|64333|Rho GTPase activating protein 9##AK092763|ARHGAP9|64333|Rho GTPase activating protein 9##NM_001080157|ARHGAP9|64333|Rho GTPase activating protein 9##AK301095|ARHGAP9|64333|Rho GTPase activating protein 9##AK057573|ARHGAP9|64333|Rho GTPase activating protein 9##AB030239|ARHGAP9|64333|Rho GTPase activating protein 9##NM_001080156|ARHGAP9|64333|Rho GTPase activating protein 9##NM_004990|MARS|4141|methionyl-tRNA synthetase##BC065187|MARS|4141|methionyl-tRNA synthetase##AK293945|MARS|4141|methionyl-tRNA synthetase##AK303349|MARS|4141|methionyl-tRNA synthetase##D84224|MARS|4141|methionyl-tRNA synthetase##AK092986|MARS|4141|methionyl-tRNA synthetase##AK222767|MARS|4141|methionyl-tRNA synthetase##AK290857|MARS|4141|methionyl-tRNA synthetase##BC011639|MARS|4141|methionyl-tRNA synthetase##X94754|MARS|4141|methionyl-tRNA synthetase##BC002384|MARS|4141|methionyl-tRNA synthetase##BC006328|MARS|4141|methionyl-tRNA synthetase##BC011849|MARS|4141|methionyl-tRNA synthetase##BT007338|MARS|4141|methionyl-tRNA synthetase##BC015011|MARS|4141|methionyl-tRNA synthetase##AK316581|DDIT3|1649|DNA-damage-inducible transcript 3##BC003637|DDIT3|1649|DNA-damage-inducible transcript 3##BC107859|DDIT3|1649|DNA-damage-inducible transcript 3##S40706|DDIT3|1649|DNA-damage-inducible transcript 3##AY461580|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195053|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195054|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195055|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195056|DDIT3|1649|DNA-damage-inducible transcript 3##NM_001195057|DDIT3|1649|DNA-damage-inducible transcript 3##NM_004083|DDIT3|1649|DNA-damage-inducible transcript 3	0.848189	0.0	denovo_WM_7:10:0.276	denovo_WM_7:12:0.573
chr21	34611262	34611423	reg1000743.p2	4.831	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	-8940	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	-9063	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	-9122	+	TSC_hg19_v1_chr21_+_34638697 AK313348 NM_000628 BC001903 Z17227	27359	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	27412	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	85876	+	BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##AK313348|IL10RB|3588|interleukin 10 receptor, beta##NM_000628|IL10RB|3588|interleukin 10 receptor, beta##BC001903|IL10RB|3588|interleukin 10 receptor, beta##Z17227|IL10RB|3588|interleukin 10 receptor, beta##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1	0.0	0.0	
chr2	161946963	161947107	reg1007975.p1	4.831	+	BC018951 TSC_hg19_v1_chr2_-_161350319 NM_002897 NM_016836	-596718	-	CU676342 D28482 X77494 AK225887 L11289 TSC_hg19_v1_chr2_-_161350025 AK309949 BC012992 BC012993 AK297812	-597076	-	BC069687 BC069706 BC069763 BC080620 BC065192 TSC_hg19_v1_chr2_-_161130216	-816846	-	NM_004180 NM_133484 U59863 U63830	46430	+	TSC_hg19_v1_chr2_+_162016938 AK313096 NM_001199135 BC067779	69914	+	NM_005805 TSC_hg19_v1_chr2_+_162164936 BC066336	217827	+	BC018951|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_002897|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_016836|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##D28482|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##X77494|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK225887|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##L11289|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK309949|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC012992|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC012993|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##AK297812|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069687|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069706|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC069763|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC080620|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##BC065192|RBMS1|5937|RNA binding motif, single stranded interacting protein 1##NM_004180|TANK|10010|TRAF family member-associated NFKB activator##NM_133484|TANK|10010|TRAF family member-associated NFKB activator##U59863|TANK|10010|TRAF family member-associated NFKB activator##U63830|TANK|10010|TRAF family member-associated NFKB activator##AK313096|TANK|10010|TRAF family member-associated NFKB activator##NM_001199135|TANK|10010|TRAF family member-associated NFKB activator##BC067779|TANK|10010|TRAF family member-associated NFKB activator##NM_005805|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##BC066336|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	0.981573	0.0	denovo_WM_7:22:0.753
chr3	149372238	149372354	reg1008380.p1	4.831	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-179807	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-179894	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-276754	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	3439	-	AK022036 NM_001168278	48763	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	97943	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.0	0.0	
chr12	76566780	76566914	reg1012294.p1	4.830	+	NM_004537 NM_139207	-88110	-	TSC_hg19_v1_chr12_-_76478466 BC002387 AL162068 AK122670 AK298936 D28430 AK297500 AK304787	-88359	-	TSC_hg19_v1_chr12_-_76478393 AK295147 M86667	-88469	-	TSC_hg19_v1_chr12_-_76742196 AK304178 BC026355 NM_024685	175347	-	AB040884 TSC_hg19_v1_chr12_-_76953317 AK289997 CR749542	386444	-	BC111728 TSC_hg19_v1_chr12_-_76953484	386636	-	NM_004537|NAP1L1|4673|nucleosome assembly protein 1-like 1##NM_139207|NAP1L1|4673|nucleosome assembly protein 1-like 1##BC002387|NAP1L1|4673|nucleosome assembly protein 1-like 1##AL162068|NAP1L1|4673|nucleosome assembly protein 1-like 1##AK122670|NAP1L1|4673|nucleosome assembly protein 1-like 1##AK298936|NAP1L1|4673|nucleosome assembly protein 1-like 1##D28430|NAP1L1|4673|nucleosome assembly protein 1-like 1##AK297500|NAP1L1|4673|nucleosome assembly protein 1-like 1##AK304787|NAP1L1|4673|nucleosome assembly protein 1-like 1##AK295147|NAP1L1|4673|nucleosome assembly protein 1-like 1##M86667|NAP1L1|4673|nucleosome assembly protein 1-like 1##AK304178|BBS10|79738|Bardet-Biedl syndrome 10##BC026355|BBS10|79738|Bardet-Biedl syndrome 10##NM_024685|BBS10|79738|Bardet-Biedl syndrome 10##AB040884|OSBPL8|114882|oxysterol binding protein-like 8##AK289997|OSBPL8|114882|oxysterol binding protein-like 8##CR749542|OSBPL8|114882|oxysterol binding protein-like 8##BC111728|OSBPL8|114882|oxysterol binding protein-like 8	0.988413	0.0	denovo_WM_7:-21:0.228	denovo_WM_7:-22:0.228	denovo_WM_7:-23:0.228	denovo_WM_7:-24:0.228
chr3	191840670	191840838	reg1009535.p1	4.830	+	AY858112 NM_001083308	-661803	+	AK090630 AX746546 NM_198152	-792430	-	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	-793588	+	AK125307 NM_021032 TSC_hg19_v1_chr3_-_192126847	286089	-	AK312513 TSC_hg19_v1_chr3_-_192445344 BC022524 NM_004113	604611	-	BC013123 TSC_hg19_v1_chr3_-_192635639 AK290447 BX648517	794882	-	AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK125307|FGF12|2257|fibroblast growth factor 12##NM_021032|FGF12|2257|fibroblast growth factor 12##AK312513|FGF12|2257|fibroblast growth factor 12##BC022524|FGF12|2257|fibroblast growth factor 12##NM_004113|FGF12|2257|fibroblast growth factor 12##BC013123|MB21D2|151963|Mab-21 domain containing 2##AK290447|MB21D2|151963|Mab-21 domain containing 2##BX648517|MB21D2|151963|Mab-21 domain containing 2	0.0	0.0	
chrY	1397334	1397514	reg1002158.p2	4.830	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-45841	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-59710	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-115840	-	BC035407 NM_002183	8084	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	63545	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	124377	-	NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like	2.988999	0.0	denovo_WM_7:10:0.574	denovo_WM_7:13:0.263	denovo_WM_7:-59:0.768	denovo_WM_7:82:0.793
chr13	28021240	28021415	reg1012803.p1	4.829	+	BC143711 D32257 NM_002097 TSC_hg19_v1_chr13_+_27998761 AB590496 U14134 U20272	-22556	+	TSC_hg19_v1_chr13_+_27844966 HQ258126	-176320	+	AY439004 NM_206827	-176864	+	TSC_hg19_v1_chr13_-_28024327 BC039599 NM_001166262 NM_001166261	2982	-	AF265440 TSC_hg19_v1_chr13_-_28024702 BC046166 NM_001166263 NM_152912	3395	-	BC036755 TSC_hg19_v1_chr13_-_28194667	173277	-	BC143711|GTF3A|2971|general transcription factor IIIA##D32257|GTF3A|2971|general transcription factor IIIA##NM_002097|GTF3A|2971|general transcription factor IIIA##U14134|GTF3A|2971|general transcription factor IIIA##U20272|GTF3A|2971|general transcription factor IIIA##HQ258126|RASL11A|387496|RAS-like, family 11, member A##AY439004|RASL11A|387496|RAS-like, family 11, member A##NM_206827|RASL11A|387496|RAS-like, family 11, member A##BC039599|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166262|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166261|MTIF3|219402|mitochondrial translational initiation factor 3##BC046166|MTIF3|219402|mitochondrial translational initiation factor 3##NM_001166263|MTIF3|219402|mitochondrial translational initiation factor 3##NM_152912|MTIF3|219402|mitochondrial translational initiation factor 3##BC036755|LNX2|222484|ligand of numb-protein X 2	0.999206	0.0	denovo_WM_7:15:0.310	denovo_WM_7:16:0.310	denovo_WM_7:17:0.310
chr17	29635670	29635762	reg1008938.p2	4.829	+	X51694 BC018050 AK222663 AK312445 NM_002544	-11402	-	TSC_hg19_v1_chr17_+_29421994 AK289936 M82814 M89914 BC144643 D42072	-213607	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	-213772	+	AK312822 TSC_hg19_v1_chr17_-_29641073	5355	-	TSC_hg19_v1_chr17_-_29641092 BC005926	5373	-	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	5395	-	X51694|OMG|4974|oligodendrocyte myelin glycoprotein##BC018050|OMG|4974|oligodendrocyte myelin glycoprotein##AK222663|OMG|4974|oligodendrocyte myelin glycoprotein##AK312445|OMG|4974|oligodendrocyte myelin glycoprotein##NM_002544|OMG|4974|oligodendrocyte myelin glycoprotein##AK289936|NF1|4763|neurofibromin 1##M82814|NF1|4763|neurofibromin 1##M89914|NF1|4763|neurofibromin 1##BC144643|NF1|4763|neurofibromin 1##D42072|NF1|4763|neurofibromin 1##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B	0.99131	0.0	denovo_WM_7:-50:0.225	denovo_WM_7:-53:0.284	denovo_WM_7:-54:0.288
chr17	57921414	57921520	reg1009636.p1	4.829	+	TSC_hg19_v1_chr17_+_57915291 AK310806	-6161	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-136394	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-136432	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	48724	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	48995	+	TSC_hg19_v1_chr17_+_57970492 AK300202 AK312875 BC053365 M60724 AB384946 CU690966 AK297147	49075	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK300202|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK312875|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC053365|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##M60724|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK297147|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	1.13371	0.0	
chr18	67872908	67873033	reg1003240.p1	4.829	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	-32	-	GU935335 GU935336 U56102 NM_006566	-248775	-	AK313199 TSC_hg19_v1_chr18_-_67615110	-257871	-	NM_004232 TSC_hg19_v1_chr18_+_67956194	83197	+	TSC_hg19_v1_chr18_+_67956280 BC020082	83291	+	BC110843 BC035789 TSC_hg19_v1_chr18_-_70210781 AK291364	2337805	-	BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule##AK313199|CD226|10666|CD226 molecule##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC020082|SOCS6|9306|suppressor of cytokine signaling 6##BC110843|CBLN2|147381|cerebellin 2 precursor##BC035789|CBLN2|147381|cerebellin 2 precursor##AK291364|CBLN2|147381|cerebellin 2 precursor	0.0	0.0	
chr21	15942165	15942299	reg1012910.p2	4.829	+	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	-23583	-	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-186759	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-353735	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	494985	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	1160093	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	1160309	+	BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25	0.383518	0.0	denovo_WM_7:1:0.384
chr3	171256408	171256500	reg1012774.p2	4.829	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-78383	-	NM_000340	-511687	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-511921	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	271801	-	NM_001164436 AK026825	304694	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	500961	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	0.995904	0.0	
chr5	55273840	55273948	reg1008290.p1	4.829	+	NM_001242636 NM_001242639	-124745	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-126625	+	NM_001166534 AK093439 AX748127	-211169	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	16869	-	AK123389 NM_024669	255291	-	NM_005921	837005	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.994193	0.0	denovo_WM_7:-60:0.535	denovo_WM_7:-61:0.459
chr2	171033855	171033940	reg1005215.p2	4.828	+	TSC_hg19_v1_chr2_+_170683963 NM_172070	-349939	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	-352512	-	TSC_hg19_v1_chr2_+_170662051 M20328 M35261	-371753	+	AF369908 AF391554 AF391555 AF391556 AF391557 AF391558 NM_001083615 NM_001171642 NM_138995 BC136620 BC144307	788	+	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	537961	+	TSC_hg19_v1_chr2_+_171571942 AB464708	538080	+	NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##M20328|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##M35261|SSB|6741|Sjogren syndrome antigen B (autoantigen La)##AF369908|MYO3B|140469|myosin IIIB##AF391554|MYO3B|140469|myosin IIIB##AF391555|MYO3B|140469|myosin IIIB##AF391556|MYO3B|140469|myosin IIIB##AF391557|MYO3B|140469|myosin IIIB##AF391558|MYO3B|140469|myosin IIIB##NM_001083615|MYO3B|140469|myosin IIIB##NM_001171642|MYO3B|140469|myosin IIIB##NM_138995|MYO3B|140469|myosin IIIB##BC136620|MYO3B|140469|myosin IIIB##BC144307|MYO3B|140469|myosin IIIB##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor	0.999067	0.0	
chr7	5463960	5464140	reg1001726.p2	4.828	+	NM_001080495	-874	-	AY129022 TSC_hg19_v1_chr7_-_5461555	-2509	-	TSC_hg19_v1_chr7_-_5460842 BC140723	-3144	-	CU692902 TSC_hg19_v1_chr7_-_5553380 AK057042 BC006426 BC024256 NM_024963	89301	-	TSC_hg19_v1_chr7_-_5553435 AK130444 AK294949	89377	-	M28424 V00478 TSC_hg19_v1_chr7_-_5567980 HQ154074 DQ407611 EF036500	103962	-	NM_001080495|TNRC18|84629|trinucleotide repeat containing 18##AY129022|TNRC18|84629|trinucleotide repeat containing 18##AK057042|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC006426|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC024256|FBXL18|80028|F-box and leucine-rich repeat protein 18##NM_024963|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK130444|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK294949|FBXL18|80028|F-box and leucine-rich repeat protein 18##M28424|ACTB|60|actin, beta##V00478|ACTB|60|actin, beta##DQ407611|ACTB|60|actin, beta##EF036500|ACTB|60|actin, beta	0.978133	0.0	denovo_WM_7:54:0.271	denovo_WM_7:55:0.670
chrX	117629457	117629585	reg1008000.p2	4.828	+	TSC_hg19_v1_chrX_+_117526665 AL834210	-102834	+	TSC_hg19_v1_chrX_+_117480490 AM393332 AM393787 EU831942 EU832037 AK304432	-149059	+	TSC_hg19_v1_chrX_+_117480068 NM_001184965 NM_001184966 NM_019045 AK127556 BX537578 AL833605 BX538087 AK299711 BC028697 BX648150	-149356	+	AY692226 NM_144658 TSC_hg19_v1_chrX_+_117629874	351	+	TSC_hg19_v1_chrX_+_117861562 BC015768 NM_001560 Y10659 U81379 U81380 AK313467 Y09328 BC009960 AB528371 DQ893454 DQ896296 AB209849	232046	+	TSC_hg19_v1_chrX_+_117957786 AK122676 BC036572 BC031241 BC057841 NM_173798 BC018066	328301	+	AL834210|WDR44|54521|WD repeat domain 44##AM393332|WDR44|54521|WD repeat domain 44##AM393787|WDR44|54521|WD repeat domain 44##EU831942|WDR44|54521|WD repeat domain 44##EU832037|WDR44|54521|WD repeat domain 44##AK304432|WDR44|54521|WD repeat domain 44##NM_001184965|WDR44|54521|WD repeat domain 44##NM_001184966|WDR44|54521|WD repeat domain 44##NM_019045|WDR44|54521|WD repeat domain 44##AK127556|WDR44|54521|WD repeat domain 44##BX537578|WDR44|54521|WD repeat domain 44##AL833605|WDR44|54521|WD repeat domain 44##BX538087|WDR44|54521|WD repeat domain 44##AK299711|WDR44|54521|WD repeat domain 44##BC028697|WDR44|54521|WD repeat domain 44##BX648150|WDR44|54521|WD repeat domain 44##AY692226|DOCK11|139818|dedicator of cytokinesis 11##NM_144658|DOCK11|139818|dedicator of cytokinesis 11##BC015768|IL13RA1|3597|interleukin 13 receptor, alpha 1##NM_001560|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y10659|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81379|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81380|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK313467|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y09328|IL13RA1|3597|interleukin 13 receptor, alpha 1##BC009960|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ893454|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ896296|IL13RA1|3597|interleukin 13 receptor, alpha 1##AB209849|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK122676|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC036572|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC031241|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC057841|ZCCHC12|170261|zinc finger, CCHC domain containing 12##NM_173798|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC018066|ZCCHC12|170261|zinc finger, CCHC domain containing 12	0.0	0.0	
chr12	12807087	12807206	reg1008961.p2	4.827	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-42263	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-42351	+	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	-91746	-	AK096388 NM_006143	41974	-	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	62980	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	71710	+	BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1	1.033822	0.0	denovo_WM_7:8:0.984
chr14	35293576	35293756	reg1008019.p1	4.827	+	TSC_hg19_v1_chr14_-_35183800 NM_001243645 AF134803 BC022364 BC022876 BC025683 NM_138638	-109791	-	BC011444 AK314157 NM_021914 AF134802	-110678	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	-194311	-	AB593178 TSC_hg19_v1_chr14_+_35343416 BC039097	49810	+	TSC_hg19_v1_chr14_-_35344080 BC020636	50442	-	AF086397 AF213467 TSC_hg19_v1_chr14_-_35344486	50803	-	NM_001243645|CFL2|1073|cofilin 2 (muscle)##AF134803|CFL2|1073|cofilin 2 (muscle)##BC022364|CFL2|1073|cofilin 2 (muscle)##BC022876|CFL2|1073|cofilin 2 (muscle)##BC025683|CFL2|1073|cofilin 2 (muscle)##NM_138638|CFL2|1073|cofilin 2 (muscle)##BC011444|CFL2|1073|cofilin 2 (muscle)##AK314157|CFL2|1073|cofilin 2 (muscle)##NM_021914|CFL2|1073|cofilin 2 (muscle)##AF134802|CFL2|1073|cofilin 2 (muscle)##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6##BC020636|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF086397|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##AF213467|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A	1.991648	0.0	
chr17	38042536	38042626	reg1010060.p1	4.827	+	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	-18138	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	-22151	-	AK290115 NM_001242443	-146362	+	AF119884 NM_018530	31211	-	AK000409 AK296607 NM_001042471 NM_001165958 NM_001165959	32291	-	BC054042 BC050710 AF151043 BC000638 BC018837 TSC_hg19_v1_chr17_-_38078103	35425	-	AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B##AK000409|GSDMB|55876|gasdermin B##AK296607|GSDMB|55876|gasdermin B##NM_001042471|GSDMB|55876|gasdermin B##NM_001165958|GSDMB|55876|gasdermin B##NM_001165959|GSDMB|55876|gasdermin B##BC054042|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC050710|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AF151043|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC000638|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC018837|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)	0.0	0.0	
chr17	41650750	41650919	reg1003949.p1	4.827	+	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-27108	-	BC016623 AK290429 AK299019 AK312934 NM_001986	-27559	-	D12765 TSC_hg19_v1_chr17_-_41622738 DQ396626	-28094	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	88081	-	NM_001040002 AK291139	88441	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	185309	-	AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC016623|ETV4|2118|ets variant 4##AK290429|ETV4|2118|ets variant 4##AK299019|ETV4|2118|ets variant 4##AK312934|ETV4|2118|ets variant 4##NM_001986|ETV4|2118|ets variant 4##D12765|ETV4|2118|ets variant 4##DQ396626|ETV4|2118|ets variant 4##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin	0.0	0.0	
chr3	27382233	27382368	reg1008983.p2	4.827	+	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-718000	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1550720	+	AK296047 NM_001145294	-1550788	-	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	28613	-	AF047033 AF089726 NM_003615	115944	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	143525	-	BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK296047|NGLY1|55768|N-glycanase 1##NM_001145294|NGLY1|55768|N-glycanase 1##AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.347048	0.0	
chr3	90074039	90074181	reg1010500.p1	4.827	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-917260	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-917389	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-1875082	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	3618566	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	3618808	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	3624917	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.997189	0.0	denovo_WM_7:96:0.920
chr7	157143539	157143667	reg1004168.p2	4.827	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-13892	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-119597	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-211920	+	TSC_hg19_v1_chr7_+_157647233 BC034557	503671	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1236850	-	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	1353874	-	AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2	0.998278	0.0	denovo_WM_7:35:0.827
chr7	77587487	77587567	reg1010283.p1	4.827	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	-118018	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	-159317	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	-159386	+	AB014605 BC150277 AK297353 AF038563 NM_012301	1495352	-	TSC_hg19_v1_chr7_+_79083303 AK311103	1495630	+	TSC_hg19_v1_chr7_+_79764166 NM_002069 BC026326 AL049933 AK292953	2176612	+	BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##AB014605|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##BC150277|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK297353|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AF038563|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##NM_012301|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK311103|MAGI2-AS3|100505881|MAGI2 antisense RNA 3 (non-protein coding)##NM_002069|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##BC026326|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AL049933|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AK292953|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	0.0	0.0	
chr16	11277604	11277748	reg1010908.p2	4.826	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-239233	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-241441	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-241510	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	72374	-	X63758 BC096135 BC096136 BC096137 NM_005425	85462	-	NM_021247	89775	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.998839	0.0	
chr4	48228187	48228276	reg1008038.p2	4.826	+	BC017829 L27071 NM_003328	-91973	-	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-209428	+	X64802 TSC_hg19_v1_chr4_-_48018662	-209594	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	43604	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	115180	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	115382	+	BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2	0.0	0.0	
chr6	135435607	135435755	reg1011339.p1	4.826	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-59687	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-59793	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-164449	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	66767	+	TSC_hg19_v1_chr6_+_135502507 BC064955	66814	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	66905	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr16	86148370	86148536	reg1010015.p1	4.825	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-215667	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-315118	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-315148	+	TSC_hg19_v1_chr16_-_86542463 AK091834	394011	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	395703	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	395787	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.991624	0.0	denovo_WM_7:-104:0.557	denovo_WM_7:-105:0.279
chr20	36724268	36724392	reg1005198.p1	4.825	+	TSC_hg19_v1_chr20_+_36662228 AB463518 CU689672	-62053	+	TSC_hg19_v1_chr20_+_36662168 BC033629 AK312468 BC001696	-62163	+	TSC_hg19_v1_chr20_+_36661917 NM_021215 DQ372938	-62369	+	TSC_hg19_v1_chr20_-_36758362 M98479	34061	-	TSC_hg19_v1_chr20_-_36793673 AK291714 AK058031 AK295775 AK300292 AK314618 BC003551 NM_004613 NM_198951	69349	-	AK096202 NM_001029864	164843	-	BC033629|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##AK312468|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##BC001696|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##NM_021215|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##DQ372938|RPRD1B|58490|regulation of nuclear pre-mRNA domain containing 1B##M98479|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK291714|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK058031|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK295775|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK300292|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK314618|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##BC003551|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##NM_004613|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##NM_198951|TGM2|7052|transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)##AK096202|KIAA1755|85449|KIAA1755##NM_001029864|KIAA1755|85449|KIAA1755	0.0	0.0	
chr7	72141927	72142018	reg1010311.p1	4.825	+	NM_031468	-264613	-	NM_001017440 TSC_hg19_v1_chr7_-_71802376	-339668	-	AK123862 TSC_hg19_v1_chr7_-_71801809	-340194	-	AK303225 AK309556 AK301471 BC068520 AK310913 NM_001145440 NM_001145441	156810	-	TSC_hg19_v1_chr7_+_72300065 BC010183	158127	+	TSC_hg19_v1_chr7_+_72349925 AB014518 NM_172020	207963	+	NM_031468|CALN1|83698|calneuron 1##NM_001017440|CALN1|83698|calneuron 1##AK123862|CALN1|83698|calneuron 1##AK303225|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK309556|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK301471|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##BC068520|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK310913|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_001145440|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_001145441|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##BC010183|SBDSP1|155370|Shwachman-Bodian-Diamond syndrome pseudogene 1##AB014518|POM121|9883|POM121 membrane glycoprotein##NM_172020|POM121|9883|POM121 membrane glycoprotein	0.25884	0.0	denovo_WM_7:-19:0.218
chr5	32586400	32586554	reg1009997.p2	4.824	+	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	-821	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-141541	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-141699	-	NM_001204376 AK300094 AK308301	124273	+	AK290870 NM_000908 NM_001204375 M59305	125011	+	BC131540 X52282 TSC_hg19_v1_chr5_+_32711843 AF025998	125328	+	NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##BC131540|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##X52282|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AF025998|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.0	0.0	
chr6	42757805	42757894	reg1009501.p1	4.824	+	TSC_hg19_v1_chr6_+_42751233 AK098234	-6608	+	TSC_hg19_v1_chr6_+_42750789 AK096036	-7188	+	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	-8152	+	AL833540 NM_015349 BC130302	30982	+	TSC_hg19_v1_chr6_+_42847388 BC064519 S81578 BC036861	89548	+	TSC_hg19_v1_chr6_+_42847644 AK291310 AK299816 AK021904 AK091341 AK291949 AK297324 BC058020 BC073890 NM_198486 CU687268 EU832458 EU832540	89803	+	AK098234|FLJ38717|401261|FLJ38717 protein##AK096036|FLJ38717|401261|FLJ38717 protein##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##AL833540|KIAA0240|23506|KIAA0240##NM_015349|KIAA0240|23506|KIAA0240##BC130302|KIAA0240|23506|KIAA0240##BC064519|RPL7L1|285855|ribosomal protein L7-like 1##BC036861|RPL7L1|285855|ribosomal protein L7-like 1##AK291310|RPL7L1|285855|ribosomal protein L7-like 1##AK299816|RPL7L1|285855|ribosomal protein L7-like 1##AK021904|RPL7L1|285855|ribosomal protein L7-like 1##AK291949|RPL7L1|285855|ribosomal protein L7-like 1##BC058020|RPL7L1|285855|ribosomal protein L7-like 1##BC073890|RPL7L1|285855|ribosomal protein L7-like 1##NM_198486|RPL7L1|285855|ribosomal protein L7-like 1##EU832458|RPL7L1|285855|ribosomal protein L7-like 1##EU832540|RPL7L1|285855|ribosomal protein L7-like 1	0.693254	0.0	denovo_WM_7:58:0.605
chr10	83354955	83355072	reg1008611.p1	4.823	+	AK123978 NM_001145719	-1054439	+	AK123885 NM_207372	-1057356	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-1140909	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	280069	+	DQ857894 NM_001165973	282429	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	2544244	+	AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##BC002920|TSPAN14|81619|tetraspanin 14##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein	0.925796	0.0	denovo_WM_7:-11:0.689	denovo_WM_7:-13:0.217
chr11	64829289	64829381	reg1009930.p1	4.823	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	-3333	-	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	-20917	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	-20954	+	DQ893251 DQ896580 TSC_hg19_v1_chr11_-_64851515 BC011000 AK291490	22165	-	TSC_hg19_v1_chr11_-_64851564 NM_080668	22250	-	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	22371	+	AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##NM_013299|SAC3D1|29901|SAC3 domain containing 1##DQ893251|CDCA5|113130|cell division cycle associated 5##DQ896580|CDCA5|113130|cell division cycle associated 5##BC011000|CDCA5|113130|cell division cycle associated 5##AK291490|CDCA5|113130|cell division cycle associated 5##NM_080668|CDCA5|113130|cell division cycle associated 5##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1	2.69039	0.0	denovo_WM_7:-65:0.686	denovo_WM_7:-80:0.700
chr1	21580550	21580654	reg1012297.p1	4.823	+	TSC_hg19_v1_chr1_-_21503387 NM_001198801 NM_001198802	-77232	-	TSC_hg19_v1_chr1_-_21503344 BC072413 AB209119	-77278	-	BC030578 NM_001198803	-79363	-	D43698 TSC_hg19_v1_chr1_-_21606025 BX648351 NM_001113347	25481	-	AB031742 AB384697 AJ130828 AK304167 NM_001113349 TSC_hg19_v1_chr1_-_21616765	36106	-	Z35307 D49471 HQ258359 TSC_hg19_v1_chr1_-_21616935 AK290656 AK309677 AK296486 BC117256 BC126257 NM_001397	36332	-	NM_001198801|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198802|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC072413|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AB209119|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC030578|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198803|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##D43698|ECE1|1889|endothelin converting enzyme 1##BX648351|ECE1|1889|endothelin converting enzyme 1##NM_001113347|ECE1|1889|endothelin converting enzyme 1##AB031742|ECE1|1889|endothelin converting enzyme 1##AJ130828|ECE1|1889|endothelin converting enzyme 1##AK304167|ECE1|1889|endothelin converting enzyme 1##NM_001113349|ECE1|1889|endothelin converting enzyme 1##Z35307|ECE1|1889|endothelin converting enzyme 1##D49471|ECE1|1889|endothelin converting enzyme 1##HQ258359|ECE1|1889|endothelin converting enzyme 1##AK290656|ECE1|1889|endothelin converting enzyme 1##AK309677|ECE1|1889|endothelin converting enzyme 1##AK296486|ECE1|1889|endothelin converting enzyme 1##BC117256|ECE1|1889|endothelin converting enzyme 1##BC126257|ECE1|1889|endothelin converting enzyme 1##NM_001397|ECE1|1889|endothelin converting enzyme 1	0.996067	0.0	
chr14	51256670	51256805	reg1011091.p2	4.823	+	TSC_hg19_v1_chr14_-_51135048 AK225896 AK095903	-121669	-	BC020537 TSC_hg19_v1_chr14_-_51135025 BC006385 NM_021818 AK021500	-121711	-	AJ292969 AK023071 TSC_hg19_v1_chr14_-_51135016 AK290883	-121797	-	AB046785 TSC_hg19_v1_chr14_-_51297860 BC065521 AF223937 AF223938 AF223939 AF302773 AY736182 NM_016350 NM_020921 NM_182944 NM_182946	41083	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	82141	+	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	154445	-	AK225896|SAV1|60485|salvador homolog 1 (Drosophila)##AK095903|SAV1|60485|salvador homolog 1 (Drosophila)##BC020537|SAV1|60485|salvador homolog 1 (Drosophila)##BC006385|SAV1|60485|salvador homolog 1 (Drosophila)##NM_021818|SAV1|60485|salvador homolog 1 (Drosophila)##AK021500|SAV1|60485|salvador homolog 1 (Drosophila)##AJ292969|SAV1|60485|salvador homolog 1 (Drosophila)##AK023071|SAV1|60485|salvador homolog 1 (Drosophila)##AK290883|SAV1|60485|salvador homolog 1 (Drosophila)##AB046785|NIN|51199|ninein (GSK3B interacting protein)##BC065521|NIN|51199|ninein (GSK3B interacting protein)##AF223937|NIN|51199|ninein (GSK3B interacting protein)##AF223938|NIN|51199|ninein (GSK3B interacting protein)##AF223939|NIN|51199|ninein (GSK3B interacting protein)##AF302773|NIN|51199|ninein (GSK3B interacting protein)##AY736182|NIN|51199|ninein (GSK3B interacting protein)##NM_016350|NIN|51199|ninein (GSK3B interacting protein)##NM_020921|NIN|51199|ninein (GSK3B interacting protein)##NM_182944|NIN|51199|ninein (GSK3B interacting protein)##NM_182946|NIN|51199|ninein (GSK3B interacting protein)##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver	0.0	0.0	
chr11	71823384	71823506	reg1010711.p2	4.822	+	TSC_hg19_v1_chr11_-_71814398 NM_017907	-9044	-	TSC_hg19_v1_chr11_-_71814344 AK300681	-9103	-	BC001706 TSC_hg19_v1_chr11_-_71814323 AK000632 AF289583	-9132	-	TSC_hg19_v1_chr11_-_71823742 AK311146 AK222622 BC005156 BC005393 AF077206 NM_014042 AL080071	336	-	BC030285 NM_000804 BC126398	23331	+	J05013 NM_016724 NM_016725 BC002947 AK223527 M28099	77246	+	NM_017907|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AK300681|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##BC001706|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AK000632|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AF289583|LAMTOR1|55004|late endosomal/lysosomal adaptor, MAPK and MTOR activator 1##AK311146|C11orf51|25906|chromosome 11 open reading frame 51##AK222622|C11orf51|25906|chromosome 11 open reading frame 51##BC005156|C11orf51|25906|chromosome 11 open reading frame 51##BC005393|C11orf51|25906|chromosome 11 open reading frame 51##AF077206|C11orf51|25906|chromosome 11 open reading frame 51##NM_014042|C11orf51|25906|chromosome 11 open reading frame 51##AL080071|C11orf51|25906|chromosome 11 open reading frame 51##BC030285|FOLR3|2352|folate receptor 3 (gamma)##NM_000804|FOLR3|2352|folate receptor 3 (gamma)##BC126398|FOLR3|2352|folate receptor 3 (gamma)##J05013|FOLR1|2348|folate receptor 1 (adult)##NM_016724|FOLR1|2348|folate receptor 1 (adult)##NM_016725|FOLR1|2348|folate receptor 1 (adult)##BC002947|FOLR1|2348|folate receptor 1 (adult)##AK223527|FOLR1|2348|folate receptor 1 (adult)##M28099|FOLR1|2348|folate receptor 1 (adult)	0.0	0.0	
chr17	17800879	17800991	reg1005029.p1	4.822	+	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	-60611	-	TSC_hg19_v1_chr17_-_17740301 U00968 BC063281	-60640	-	AB373959 TSC_hg19_v1_chr17_-_17726919 S66167 AK091131 AK293795 AK294800 AK297113	-74031	-	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	74806	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	75265	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	141468	-	BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1##U00968|SREBF1|6720|sterol regulatory element binding transcription factor 1##BC063281|SREBF1|6720|sterol regulatory element binding transcription factor 1##AB373959|SREBF1|6720|sterol regulatory element binding transcription factor 1##S66167|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK091131|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK293795|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK294800|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK297113|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2	0.0	0.0	
chr17	42724536	42724703	reg1008728.p1	4.822	+	TSC_hg19_v1_chr17_+_42634696 NM_001466 BC052266 L37882 BC113402 BC113404 AB017364 AB590852	-89793	+	TSC_hg19_v1_chr17_-_42580958 NM_001002909	-143647	-	TSC_hg19_v1_chr17_-_42580760 BC136629 BC144323 AK025600 BC140010	-143855	-	TSC_hg19_v1_chr17_+_42733745 NM_001145080	9133	+	TSC_hg19_v1_chr17_-_42767190 CU690504 BC023298 AL833590 AK056357 BC047776 BX648868 NM_001099225 NM_144609	42509	-	BC016158 NM_025104 NM_145663 AK303282 TSC_hg19_v1_chr17_+_42786023 AK023149 AF448801	61393	+	NM_001466|FZD2|2535|frizzled family receptor 2##BC052266|FZD2|2535|frizzled family receptor 2##L37882|FZD2|2535|frizzled family receptor 2##BC113402|FZD2|2535|frizzled family receptor 2##BC113404|FZD2|2535|frizzled family receptor 2##AB017364|FZD2|2535|frizzled family receptor 2##NM_001002909|GPATCH8|23131|G patch domain containing 8##BC136629|GPATCH8|23131|G patch domain containing 8##BC144323|GPATCH8|23131|G patch domain containing 8##AK025600|GPATCH8|23131|G patch domain containing 8##BC140010|GPATCH8|23131|G patch domain containing 8##NM_001145080|C17orf104|284071|chromosome 17 open reading frame 104##BC023298|CCDC43|124808|coiled-coil domain containing 43##AL833590|CCDC43|124808|coiled-coil domain containing 43##AK056357|CCDC43|124808|coiled-coil domain containing 43##BC047776|CCDC43|124808|coiled-coil domain containing 43##BX648868|CCDC43|124808|coiled-coil domain containing 43##NM_001099225|CCDC43|124808|coiled-coil domain containing 43##NM_144609|CCDC43|124808|coiled-coil domain containing 43##BC016158|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##NM_025104|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##NM_145663|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##AK303282|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##AK023149|DBF4B|80174|DBF4 homolog B (S. cerevisiae)##AF448801|DBF4B|80174|DBF4 homolog B (S. cerevisiae)	0.997116	0.0	
chr2	64772716	64772844	reg1008249.p2	4.822	+	TSC_hg19_v1_chr2_+_64751580 AL833962	-21178	+	TSC_hg19_v1_chr2_+_64751481 NM_001002243 NM_017657 NM_203437 BC047529 AK000087 AK222821	-21296	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	-91132	+	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	108069	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	108267	-	TSC_hg19_v1_chr2_-_65090764 AK097952	317961	-	AL833962|AFTPH|54812|aftiphilin##NM_001002243|AFTPH|54812|aftiphilin##NM_017657|AFTPH|54812|aftiphilin##NM_203437|AFTPH|54812|aftiphilin##BC047529|AFTPH|54812|aftiphilin##AK000087|AFTPH|54812|aftiphilin##AK222821|AFTPH|54812|aftiphilin##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2	2.731759	0.0	denovo_WM_7:-38:0.795	denovo_WM_7:-53:0.793	denovo_WM_7:-68:0.797
chr4	35641613	35641747	reg1009550.p1	4.822	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-4919221	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-4919486	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-4919681	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	604357	-	AK131492 NM_001136536 AK304357 AK316523	641566	+	BC157885 NM_001170700	643963	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.995923	0.0	denovo_WM_7:11:0.759
chr7	5666230	5666399	reg1011115.p1	4.822	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	-33804	+	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	-33876	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-96105	-	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	154908	-	BC004947 TSC_hg19_v1_chr7_-_5821284 AK297231 BC063825 AK092767 AX747717 AK297416 BX537406 NM_207111 NM_207116 AK292396	154995	-	TSC_hg19_v1_chr7_+_5862791 AK291169 AK096288	196471	+	BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216##BC004947|RNF216|54476|ring finger protein 216##AK297231|RNF216|54476|ring finger protein 216##BC063825|RNF216|54476|ring finger protein 216##AK092767|RNF216|54476|ring finger protein 216##AK297416|RNF216|54476|ring finger protein 216##BX537406|RNF216|54476|ring finger protein 216##NM_207111|RNF216|54476|ring finger protein 216##NM_207116|RNF216|54476|ring finger protein 216##AK292396|RNF216|54476|ring finger protein 216##AK291169|ZNF815|401303|zinc finger protein 815##AK096288|ZNF815|401303|zinc finger protein 815	1.786258	0.0	denovo_WM_7:-4:0.518	denovo_WM_7:-5:0.462	denovo_WM_7:14:0.289	denovo_WM_7:18:0.288
chr12	121952024	121952165	reg1010773.p1	4.821	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-47020	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-114130	+	AK025614 NM_001137559	-160083	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	66165	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	66820	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	112549	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	0.362176	0.0	
chr4	38759004	38759151	reg1011510.p1	4.821	+	AF289565 TSC_hg19_v1_chr4_-_38666549	-92588	-	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	-93251	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-780060	+	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	25522	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	47342	-	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	99351	-	AF289565|FLJ13197|79667|uncharacterized FLJ13197##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6	0.999383	0.0	denovo_WM_7:-11:0.952
chr11	26616900	26617010	reg1008196.p1	4.820	+	AK128337 AJ417818 AJ507429 BC058007 AY358668 BC020912 NM_001135091 NM_001135092 NM_145650	-23215	-	NM_031418 AK302659	-263225	+	AK127695 NM_001009909 NM_001252008 NM_001252010 TSC_hg19_v1_chr11_+_24518540 AY164460 AL832641 AY358386 BC132829 BC144177 AK309077 BC151234 HQ258382	-2098306	+	BC049207 NM_178498	126604	-	NM_203371 TSC_hg19_v1_chr11_+_27015658	398687	+	TSC_hg19_v1_chr11_+_27015673 AK310616	398715	+	AK128337|MUC15|143662|mucin 15, cell surface associated##AJ417818|MUC15|143662|mucin 15, cell surface associated##AJ507429|MUC15|143662|mucin 15, cell surface associated##BC058007|MUC15|143662|mucin 15, cell surface associated##AY358668|MUC15|143662|mucin 15, cell surface associated##BC020912|MUC15|143662|mucin 15, cell surface associated##NM_001135091|MUC15|143662|mucin 15, cell surface associated##NM_001135092|MUC15|143662|mucin 15, cell surface associated##NM_145650|MUC15|143662|mucin 15, cell surface associated##NM_031418|ANO3|63982|anoctamin 3##AK302659|ANO3|63982|anoctamin 3##AK127695|LUZP2|338645|leucine zipper protein 2##NM_001009909|LUZP2|338645|leucine zipper protein 2##NM_001252008|LUZP2|338645|leucine zipper protein 2##NM_001252010|LUZP2|338645|leucine zipper protein 2##AY164460|LUZP2|338645|leucine zipper protein 2##AL832641|LUZP2|338645|leucine zipper protein 2##AY358386|LUZP2|338645|leucine zipper protein 2##BC132829|LUZP2|338645|leucine zipper protein 2##BC144177|LUZP2|338645|leucine zipper protein 2##AK309077|LUZP2|338645|leucine zipper protein 2##BC151234|LUZP2|338645|leucine zipper protein 2##HQ258382|LUZP2|338645|leucine zipper protein 2##BC049207|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12##NM_178498|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12##NM_203371|FIBIN|387758|fin bud initiation factor homolog (zebrafish)	1.961071	0.0	denovo_WM_7:57:0.832	denovo_WM_7:72:0.712
chr3	195238125	195238272	reg1012541.p2	4.820	+	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	-74496	-	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	-246348	-	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-830695	+	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	31915	-	TSC_hg19_v1_chr3_-_195306274 BT019860 BT019861 CR456838 CR541773 CU675645 DQ892668 DQ896124	68104	-	J02611 BC007402 TSC_hg19_v1_chr3_-_195310812 AK312090 AK294523	72632	-	D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BT019860|APOD|347|apolipoprotein D##BT019861|APOD|347|apolipoprotein D##CR456838|APOD|347|apolipoprotein D##CR541773|APOD|347|apolipoprotein D##DQ892668|APOD|347|apolipoprotein D##DQ896124|APOD|347|apolipoprotein D##J02611|APOD|347|apolipoprotein D##BC007402|APOD|347|apolipoprotein D##AK312090|APOD|347|apolipoprotein D##AK294523|APOD|347|apolipoprotein D	0.997804	0.0	
chr10	104412157	104412337	reg1001599.p1	4.818	+	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	-7963	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-148428	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-148528	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	61850	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	62098	+	TSC_hg19_v1_chr10_+_104503704 AK300871	91423	+	NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2##AK300871|C10orf26|54838|chromosome 10 open reading frame 26	0.0	0.0	
chr1	17765999	17766155	reg1002960.p2	4.818	+	TSC_hg19_v1_chr1_-_17765069 BC053908 NM_001136204	-1016	-	TSC_hg19_v1_chr1_-_17765031 AB384219 BC042141	-1067	-	BC142946 TSC_hg19_v1_chr1_-_17764885	-1215	-	TSC_hg19_v1_chr1_-_17766174 AB040903	98	-	TSC_hg19_v1_chr1_-_17766260 NM_018715	194	-	TSC_hg19_v1_chr1_+_17846826 AK129959	80746	+	BC053908|RCC2|55920|regulator of chromosome condensation 2##NM_001136204|RCC2|55920|regulator of chromosome condensation 2##BC042141|RCC2|55920|regulator of chromosome condensation 2##BC142946|RCC2|55920|regulator of chromosome condensation 2##AB040903|RCC2|55920|regulator of chromosome condensation 2##NM_018715|RCC2|55920|regulator of chromosome condensation 2##AK129959|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like	0.988994	0.0	denovo_WM_7:-89:0.210	denovo_WM_7:-90:0.322	denovo_WM_7:-91:0.321
chr19	15409436	15409540	reg1008355.p1	4.818	+	AF386649 NM_014299 NM_058243 Y12059	-18227	-	BC115002 NM_001142886	-65676	-	BC132958 BC132960 AK026061 NM_024794	-66276	-	TSC_hg19_v1_chr19_-_15442714 BC030158 AK307664	33214	-	BC000156 TSC_hg19_v1_chr19_-_15443139	33650	-	TSC_hg19_v1_chr19_-_15443306 BC038988	33817	-	AF386649|BRD4|23476|bromodomain containing 4##NM_014299|BRD4|23476|bromodomain containing 4##NM_058243|BRD4|23476|bromodomain containing 4##Y12059|BRD4|23476|bromodomain containing 4##BC115002|EPHX3|79852|epoxide hydrolase 3##NM_001142886|EPHX3|79852|epoxide hydrolase 3##BC132958|EPHX3|79852|epoxide hydrolase 3##BC132960|EPHX3|79852|epoxide hydrolase 3##AK026061|EPHX3|79852|epoxide hydrolase 3##NM_024794|EPHX3|79852|epoxide hydrolase 3##BC030158|BRD4|23476|bromodomain containing 4##AK307664|BRD4|23476|bromodomain containing 4##BC000156|BRD4|23476|bromodomain containing 4##BC038988|BRD4|23476|bromodomain containing 4	1.99661	0.0	
chr22	43057989	43058144	reg1011037.p1	4.818	+	TSC_hg19_v1_chr22_-_43045399 NM_000398	-12663	-	TSC_hg19_v1_chr22_-_43045347 AJ010116 AJ010117 AJ010118 BT009821 AB463000 CU012995 CU013283 CR456435 AF361370 Y09501 BC004821	-12734	-	TSC_hg19_v1_chr22_-_43042979 NM_001129819 NM_001171661 NM_007326	-15081	-	AK074388 TSC_hg19_v1_chr22_-_43089917 AJ245581 CU677819 AB590407 DQ891619 DQ894811	31841	-	TSC_hg19_v1_chr22_-_43116877 BC017068 GU902275 GU902276 GU902277 GU902278 GU902279 GU902280 GU902281 AK130208 NM_017436	58789	-	TSC_hg19_v1_chr22_-_43117270 AK312927	59211	-	NM_000398|CYB5R3|1727|cytochrome b5 reductase 3##AJ010116|CYB5R3|1727|cytochrome b5 reductase 3##AJ010117|CYB5R3|1727|cytochrome b5 reductase 3##AJ010118|CYB5R3|1727|cytochrome b5 reductase 3##BT009821|CYB5R3|1727|cytochrome b5 reductase 3##CU012995|CYB5R3|1727|cytochrome b5 reductase 3##CU013283|CYB5R3|1727|cytochrome b5 reductase 3##CR456435|CYB5R3|1727|cytochrome b5 reductase 3##AF361370|CYB5R3|1727|cytochrome b5 reductase 3##Y09501|CYB5R3|1727|cytochrome b5 reductase 3##BC004821|CYB5R3|1727|cytochrome b5 reductase 3##NM_001129819|CYB5R3|1727|cytochrome b5 reductase 3##NM_001171661|CYB5R3|1727|cytochrome b5 reductase 3##NM_007326|CYB5R3|1727|cytochrome b5 reductase 3##AK074388|A4GALT|53947|alpha 1,4-galactosyltransferase##AJ245581|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ891619|A4GALT|53947|alpha 1,4-galactosyltransferase##DQ894811|A4GALT|53947|alpha 1,4-galactosyltransferase##BC017068|A4GALT|53947|alpha 1,4-galactosyltransferase##NM_017436|A4GALT|53947|alpha 1,4-galactosyltransferase##AK312927|A4GALT|53947|alpha 1,4-galactosyltransferase	0.0	0.944521	CTCF.p2:86:0.945
chr6	33280692	33280841	reg1010549.p1	4.818	+	TSC_hg19_v1_chr6_-_33267186 NM_001243738 NM_004761	-13584	-	TSC_hg19_v1_chr6_-_33266747 BC040989	-14011	-	TSC_hg19_v1_chr6_-_33266743 AL050259	-14027	-	TSC_hg19_v1_chr6_-_33281842 AF314222 EU693375 CU687344 AF067286 AB010639 AF009510	1051	-	TSC_hg19_v1_chr6_-_33281856 AF029750 Y13582 BC010279 BC080574	1158	-	TSC_hg19_v1_chr6_-_33282034 BC064966 AK297903 NM_003190 NM_172208 NM_172209	1318	-	NM_001243738|RGL2|5863|ral guanine nucleotide dissociation stimulator-like 2##NM_004761|RGL2|5863|ral guanine nucleotide dissociation stimulator-like 2##BC040989|RGL2|5863|ral guanine nucleotide dissociation stimulator-like 2##AL050259|RGL2|5863|ral guanine nucleotide dissociation stimulator-like 2##AF314222|TAPBP|6892|TAP binding protein (tapasin)##EU693375|TAPBP|6892|TAP binding protein (tapasin)##AF067286|TAPBP|6892|TAP binding protein (tapasin)##AB010639|TAPBP|6892|TAP binding protein (tapasin)##AF009510|TAPBP|6892|TAP binding protein (tapasin)##AF029750|TAPBP|6892|TAP binding protein (tapasin)##Y13582|TAPBP|6892|TAP binding protein (tapasin)##BC080574|TAPBP|6892|TAP binding protein (tapasin)##BC064966|TAPBP|6892|TAP binding protein (tapasin)##NM_003190|TAPBP|6892|TAP binding protein (tapasin)##NM_172208|TAPBP|6892|TAP binding protein (tapasin)##NM_172209|TAPBP|6892|TAP binding protein (tapasin)	0.998245	0.0	denovo_WM_7:31:0.266	denovo_WM_7:34:0.420
chr16	67062116	67062206	reg1009054.p1	4.817	+	NM_001190201 NM_001190202 TSC_hg19_v1_chr16_+_67034441 AK094783 AK300792 AK295483 BC041823 BC064573	-27613	+	AK293061 NM_173815 AK296064	-39632	+	AK025389 NM_001185176	-60784	+	TSC_hg19_v1_chr16_+_67063051 BC018509 NM_001755 NM_022845	886	+	TSC_hg19_v1_chr16_+_67063217 AK290462 AK291834 AB463544 AF294326 BT006862 CU676254 DQ890558 DQ893719 L20298 AK311724	1127	+	TSC_hg19_v1_chr16_+_67143864 AF176088 BC004556 NM_025187	81693	+	NM_001190201|CES4A|283848|carboxylesterase 4A##NM_001190202|CES4A|283848|carboxylesterase 4A##AK094783|CES4A|283848|carboxylesterase 4A##AK300792|CES4A|283848|carboxylesterase 4A##AK295483|CES4A|283848|carboxylesterase 4A##BC041823|CES4A|283848|carboxylesterase 4A##BC064573|CES4A|283848|carboxylesterase 4A##AK293061|CES4A|283848|carboxylesterase 4A##NM_173815|CES4A|283848|carboxylesterase 4A##AK296064|CES4A|283848|carboxylesterase 4A##AK025389|CES3|23491|carboxylesterase 3##NM_001185176|CES3|23491|carboxylesterase 3##BC018509|CBFB|865|core-binding factor, beta subunit##NM_001755|CBFB|865|core-binding factor, beta subunit##NM_022845|CBFB|865|core-binding factor, beta subunit##AK290462|CBFB|865|core-binding factor, beta subunit##AK291834|CBFB|865|core-binding factor, beta subunit##AF294326|CBFB|865|core-binding factor, beta subunit##BT006862|CBFB|865|core-binding factor, beta subunit##DQ890558|CBFB|865|core-binding factor, beta subunit##DQ893719|CBFB|865|core-binding factor, beta subunit##L20298|CBFB|865|core-binding factor, beta subunit##AK311724|CBFB|865|core-binding factor, beta subunit##AF176088|C16orf70|80262|chromosome 16 open reading frame 70##BC004556|C16orf70|80262|chromosome 16 open reading frame 70##NM_025187|C16orf70|80262|chromosome 16 open reading frame 70	1.977886	0.0	denovo_WM_7:-45:0.564	denovo_WM_7:-46:0.416	denovo_WM_7:-60:0.490	denovo_WM_7:-61:0.496
chr16	70060361	70060515	reg1012080.p2	4.817	+	AF521893 NM_182619 BC141808 AF428259 AF448856 AL833339 AK289884 AK298310 AK074773 EU831776 EU831854 CU687316 AK096051	-75346	+	BC078143 NM_001136214	-75813	+	AK126332 NM_199424 TSC_hg19_v1_chr16_+_69958904	-101536	+	AK292860 TSC_hg19_v1_chr16_-_70099722	39287	-	TSC_hg19_v1_chr16_-_70099842 AK027135 AL833251	39382	-	AB082521 BC150251 NM_017990	87090	+	AF521893|CLEC18A|348174|C-type lectin domain family 18, member A##NM_182619|CLEC18A|348174|C-type lectin domain family 18, member A##BC141808|CLEC18A|348174|C-type lectin domain family 18, member A##AF428259|CLEC18A|348174|C-type lectin domain family 18, member A##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK289884|CLEC18A|348174|C-type lectin domain family 18, member A##AK298310|CLEC18A|348174|C-type lectin domain family 18, member A##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##EU831776|CLEC18A|348174|C-type lectin domain family 18, member A##EU831854|CLEC18A|348174|C-type lectin domain family 18, member A##AK096051|CLEC18A|348174|C-type lectin domain family 18, member A##BC078143|CLEC18A|348174|C-type lectin domain family 18, member A##NM_001136214|CLEC18A|348174|C-type lectin domain family 18, member A##AK126332|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_199424|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AK292860|PDXDC2P|283970|pyridoxal-dependent decarboxylase domain containing 2, pseudogene##AL833251|PDXDC2P|283970|pyridoxal-dependent decarboxylase domain containing 2, pseudogene##AB082521|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##BC150251|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##NM_017990|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit	0.982473	0.0	denovo_WM_7:44:0.840
chr18	44439389	44439510	reg1010288.p2	4.817	+	TSC_hg19_v1_chr18_-_44337014 AK094273 NM_013305 AK056270	-102388	-	NM_144612	-202454	-	BC041860 AK302484 NM_001145472	-300189	-	AB527541 AF077953 AF077954 DQ896421 EU176432 TSC_hg19_v1_chr18_-_44497471 AK308143 BC111060 BC015190 AK294801 NM_004671 NM_173206	57964	-	TSC_hg19_v1_chr18_+_44497558 AK309134	58108	+	BC034999 NM_031303	87337	+	AK094273|ST8SIA5|29906|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5##NM_013305|ST8SIA5|29906|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5##AK056270|ST8SIA5|29906|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5##NM_144612|LOXHD1|125336|lipoxygenase homology domains 1##BC041860|LOXHD1|125336|lipoxygenase homology domains 1##AK302484|LOXHD1|125336|lipoxygenase homology domains 1##NM_001145472|LOXHD1|125336|lipoxygenase homology domains 1##AF077953|PIAS2|9063|protein inhibitor of activated STAT, 2##AF077954|PIAS2|9063|protein inhibitor of activated STAT, 2##DQ896421|PIAS2|9063|protein inhibitor of activated STAT, 2##EU176432|PIAS2|9063|protein inhibitor of activated STAT, 2##AK308143|PIAS2|9063|protein inhibitor of activated STAT, 2##BC111060|PIAS2|9063|protein inhibitor of activated STAT, 2##BC015190|PIAS2|9063|protein inhibitor of activated STAT, 2##AK294801|PIAS2|9063|protein inhibitor of activated STAT, 2##NM_004671|PIAS2|9063|protein inhibitor of activated STAT, 2##NM_173206|PIAS2|9063|protein inhibitor of activated STAT, 2##AK309134|KATNAL2|83473|katanin p60 subunit A-like 2##BC034999|KATNAL2|83473|katanin p60 subunit A-like 2##NM_031303|KATNAL2|83473|katanin p60 subunit A-like 2	0.991409	0.0	
chr6_cox_hap2	1996516	1996647	reg1009056.p1	4.817	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998717	0.0	denovo_WM_7:16:0.310	denovo_WM_7:17:0.310	denovo_WM_7:18:0.310
chr8	121761751	121761893	reg1011124.p1	4.817	+	TSC_hg19_v1_chr8_+_121457658 AK022122 AK300762 BC013136 NM_022045 EU176294 EU176618	-304146	+	BC021744 NM_014078	-304187	-	TSC_hg19_v1_chr8_-_121457391 AK311924	-304429	-	TSC_hg19_v1_chr8_+_121823539 AK302130	61719	+	TSC_hg19_v1_chr8_-_121823718 AF028828	61939	-	TSC_hg19_v1_chr8_-_121824090 AB590740	62241	-	AK022122|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##AK300762|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC013136|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##NM_022045|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176294|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176618|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##AF028828|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	0.012388	0.0	
chr1	28493980	28494160	reg1010914.p1	4.816	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-78946	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-207552	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-232509	+	NM_000952 NM_001164723	9384	-	S52624 AK292053 NM_001164721 NM_001164722	26342	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	65461	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	1.990695	0.0	denovo_WM_7:82:0.955	denovo_WM_7:97:0.973
chr15	66106504	66106684	reg1003230.p1	4.816	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-22001	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-22121	-	AF062922 NM_004727	-192325	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	55253	+	TSC_hg19_v1_chr15_-_66321664 AK054827	215099	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	439483	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	0.0	0.0	
chr17	38555518	38555637	reg1011050.p1	4.816	+	TSC_hg19_v1_chr17_-_38520951 AK125254 NM_152219	-34631	-	NM_001024809	-57307	+	TSC_hg19_v1_chr17_+_38474548 AK130192	-81030	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	18547	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	44242	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	102269	-	AK125254|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_152219|GJD3|125111|gap junction protein, delta 3, 31.9kDa##NM_001024809|RARA|5914|retinoic acid receptor, alpha##AK130192|RARA|5914|retinoic acid receptor, alpha##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4	0.0	0.995604	CTCF.p2:-11:0.996
chr3	52259353	52259501	reg1008707.p1	4.816	+	TSC_hg19_v1_chr3_+_52232180 BC011798 BC063005 Y00451 X56351	-27224	+	TSC_hg19_v1_chr3_+_52232177 AK293190	-27252	+	TSC_hg19_v1_chr3_+_52232145 NM_199166 AK312566 NM_000688 AK300993 AB063322 AY260745	-27310	+	AF259262 NM_017442	751	-	CR456732 CR533520 CU678412 AM392602 DQ891754 DQ894936 AB385234 AF109365 TSC_hg19_v1_chr3_-_52273109 BC003161 BC000327 Y17169	13657	-	TSC_hg19_v1_chr3_-_52273175 AL136773 BC016452 BC021003 NM_007284	13735	-	BC011798|ALAS1|211|aminolevulinate, delta-, synthase 1##Y00451|ALAS1|211|aminolevulinate, delta-, synthase 1##X56351|ALAS1|211|aminolevulinate, delta-, synthase 1##AK293190|ALAS1|211|aminolevulinate, delta-, synthase 1##NM_199166|ALAS1|211|aminolevulinate, delta-, synthase 1##AK312566|ALAS1|211|aminolevulinate, delta-, synthase 1##NM_000688|ALAS1|211|aminolevulinate, delta-, synthase 1##AK300993|ALAS1|211|aminolevulinate, delta-, synthase 1##AB063322|ALAS1|211|aminolevulinate, delta-, synthase 1##AY260745|ALAS1|211|aminolevulinate, delta-, synthase 1##AF259262|TLR9|54106|toll-like receptor 9##NM_017442|TLR9|54106|toll-like receptor 9##CR456732|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##CR533520|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##DQ891754|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##DQ894936|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##AF109365|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##BC003161|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##BC000327|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##Y17169|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##AL136773|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##BC016452|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)##NM_007284|TWF2|11344|twinfilin, actin-binding protein, homolog 2 (Drosophila)	0.990375	0.0	denovo_WM_7:-59:0.776
chr6	137955432	137955516	reg1005343.p2	4.816	+	BC051352 AK096362 NM_175747	-139949	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-414916	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-414929	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	233063	+	TSC_hg19_v1_chr6_-_138189314 AK124173	233876	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	473094	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	1.240672	0.0	denovo_WM_7:82:0.213
chr1	26642548	26642728	reg1007946.p2	4.815	+	AY007163 TSC_hg19_v1_chr1_-_26633128 AF521018 AK291503 AF520989 AF521017 AK090792 AX746618 AK293910 CR749413 AK094198 AK296179 BX647774 BX648412 BC038106 AK093258 AX748018 NM_001077262 NM_183008	-9486	-	TSC_hg19_v1_chr1_+_26606633 DQ893377 DQ896698	-36007	+	TSC_hg19_v1_chr1_+_26606589 AK024884 AF304163	-36040	+	TSC_hg19_v1_chr1_+_26644396 NM_001803 AK311554	1762	+	TSC_hg19_v1_chr1_+_26644458 BC000644 X62466 X67699 BT007116 CR456874	1845	+	NM_145345 AK097368	2166	-	AY007163|UBXN11|91544|UBX domain protein 11##AF521018|UBXN11|91544|UBX domain protein 11##AK291503|UBXN11|91544|UBX domain protein 11##AF520989|UBXN11|91544|UBX domain protein 11##AF521017|UBXN11|91544|UBX domain protein 11##AK090792|UBXN11|91544|UBX domain protein 11##AK293910|UBXN11|91544|UBX domain protein 11##CR749413|UBXN11|91544|UBX domain protein 11##AK094198|UBXN11|91544|UBX domain protein 11##AK296179|UBXN11|91544|UBX domain protein 11##BX647774|UBXN11|91544|UBX domain protein 11##BX648412|UBXN11|91544|UBX domain protein 11##BC038106|UBXN11|91544|UBX domain protein 11##AK093258|UBXN11|91544|UBX domain protein 11##NM_001077262|UBXN11|91544|UBX domain protein 11##NM_183008|UBXN11|91544|UBX domain protein 11##DQ893377|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##DQ896698|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##AK024884|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##AF304163|SH3BGRL3|83442|SH3 domain binding glutamic acid-rich protein like 3##NM_001803|CD52|1043|CD52 molecule##BC000644|CD52|1043|CD52 molecule##X62466|CD52|1043|CD52 molecule##X67699|CD52|1043|CD52 molecule##BT007116|CD52|1043|CD52 molecule##CR456874|CD52|1043|CD52 molecule##NM_145345|UBXN11|91544|UBX domain protein 11##AK097368|UBXN11|91544|UBX domain protein 11	1.019869	0.0	
chr14	71904673	71904777	reg1006718.p1	4.815	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-530274	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-530592	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-628916	-	AF090989 AF090990 NM_015556	91316	+	AK294895 NM_001204423	494091	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	494428	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.0	0.0	
chr2	216266738	216266867	reg1008475.p1	4.815	+	TSC_hg19_v1_chr2_-_216259197 AB209287 U42593 U42594 BX640638	-7527	-	TSC_hg19_v1_chr2_-_216249683 U42458	-17115	-	TSC_hg19_v1_chr2_-_216248184 EF550130 EF550131 EF550132 EF550133 EF550134 EF550135	-18615	-	AF312399 TSC_hg19_v1_chr2_-_216290008	23170	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	33718	-	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	33980	-	AB209287|FN1|2335|fibronectin 1##U42593|FN1|2335|fibronectin 1##U42594|FN1|2335|fibronectin 1##BX640638|FN1|2335|fibronectin 1##U42458|FN1|2335|fibronectin 1##EF550130|FN1|2335|fibronectin 1##EF550131|FN1|2335|fibronectin 1##EF550132|FN1|2335|fibronectin 1##EF550133|FN1|2335|fibronectin 1##EF550134|FN1|2335|fibronectin 1##EF550135|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1	0.0	0.0	
chr22	33915673	33915781	reg1010479.p2	4.815	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-461372	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-513001	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-717975	+	AJ007583 AB011181 NM_004737 NM_133642	400643	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1546422	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1737749	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.604809	0.0	denovo_WM_7:3:0.529
chr13	62783865	62783992	reg1010646.p2	4.814	+	AK289924 NM_022843	-794274	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-794675	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-1812449	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	5020576	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	7898613	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	9656331	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.0	0.0	
chr1	8936823	8936923	reg1003513.p1	4.814	+	GU170215 NM_001201483	-5239	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	-59281	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-452856	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	1834	-	BC015641 BC027725 TSC_hg19_v1_chr1_-_8938743 BC004458 BC009912 AK222517 BC022545 D28437	1862	-	TSC_hg19_v1_chr1_-_8938746 AK223192 BX537400 AK309291 AK315417	1889	-	GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)##BC015641|ENO1|2023|enolase 1, (alpha)##BC027725|ENO1|2023|enolase 1, (alpha)##BC004458|ENO1|2023|enolase 1, (alpha)##BC009912|ENO1|2023|enolase 1, (alpha)##AK222517|ENO1|2023|enolase 1, (alpha)##BC022545|ENO1|2023|enolase 1, (alpha)##D28437|ENO1|2023|enolase 1, (alpha)##AK223192|ENO1|2023|enolase 1, (alpha)##BX537400|ENO1|2023|enolase 1, (alpha)##AK309291|ENO1|2023|enolase 1, (alpha)##AK315417|ENO1|2023|enolase 1, (alpha)	1.984534	0.0	denovo_WM_7:-8:0.516	denovo_WM_7:-10:0.270	denovo_WM_7:38:0.332	denovo_WM_7:39:0.328	denovo_WM_7:40:0.328
chr5	6444288	6444355	reg1014824.p1	4.814	+	AB591030 AY277599 AY598325 TSC_hg19_v1_chr5_-_6378661 AY453397 BC003353 NM_032286	-65671	-	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	-1021412	+	TSC_hg19_v1_chr5_+_5422777 AK126937	-1021546	+	NM_001145161 TSC_hg19_v1_chr5_+_6448927 BC150554 BC127723 AK308577	4532	+	TSC_hg19_v1_chr5_+_6449114 AK057805	4868	+	TSC_hg19_v1_chr5_-_6633158 AK291144 BC137083 AK298980	188833	-	AY277599|MED10|84246|mediator complex subunit 10##AY598325|MED10|84246|mediator complex subunit 10##AY453397|MED10|84246|mediator complex subunit 10##BC003353|MED10|84246|mediator complex subunit 10##NM_032286|MED10|84246|mediator complex subunit 10##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947##NM_001145161|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##BC150554|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##BC127723|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##AK308577|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##AK057805|UBE2QL1|134111|ubiquitin-conjugating enzyme E2Q family-like 1##AK291144|NSUN2|54888|NOP2/Sun domain family, member 2##BC137083|NSUN2|54888|NOP2/Sun domain family, member 2##AK298980|NSUN2|54888|NOP2/Sun domain family, member 2	0.0	0.0	
chr11	67880582	67880725	reg1009359.p2	4.813	+	AF025374 NM_006053	-70207	+	TSC_hg19_v1_chr11_+_67806519 U45285 AY548967	-74109	+	TSC_hg19_v1_chr11_+_67806477 NM_006019 BC018133 BC032465	-74181	+	D10704 BC036471 TSC_hg19_v1_chr11_-_67888844	8104	-	NM_001277 NM_212469 TSC_hg19_v1_chr11_-_67888859	8235	-	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	100326	-	AF025374|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##NM_006053|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##U45285|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##AY548967|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##NM_006019|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC018133|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##BC032465|TCIRG1|10312|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3##D10704|CHKA|1119|choline kinase alpha##BC036471|CHKA|1119|choline kinase alpha##NM_001277|CHKA|1119|choline kinase alpha##NM_212469|CHKA|1119|choline kinase alpha##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)	3.931845	0.0	denovo_WM_7:-54:0.944	denovo_WM_7:-80:0.267	denovo_WM_7:-81:0.691	denovo_WM_7:-96:0.832	denovo_WM_7:102:0.954
chr12	111058378	111058558	reg1001955.p3	4.813	+	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-6543	+	AK124744 TSC_hg19_v1_chr12_-_111021124	-37342	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	-37398	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	68490	-	AK293543 NM_001040107	69131	-	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	122078	-	AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	0.0	0.0	
chr12	15092264	15092428	reg1009633.p1	4.813	+	CU688844 BC030218 AY358536 NM_152321 AK056677	-885	-	BT006733 CR450358 DQ892495 DQ895707 X07362 AY542304 M58549 BC070314 X53331 BC005272 AK310040 AK312029 BC093078 TSC_hg19_v1_chr12_-_15038794 NM_000900 NM_001190839	-53558	-	AY829433 AY829434 NM_021071 AK291662 TSC_hg19_v1_chr12_-_14996461	-95922	-	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	22202	-	NM_006205 DQ980604 D45399	33620	+	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	282004	-	BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##BT006733|MGP|4256|matrix Gla protein##CR450358|MGP|4256|matrix Gla protein##DQ892495|MGP|4256|matrix Gla protein##DQ895707|MGP|4256|matrix Gla protein##X07362|MGP|4256|matrix Gla protein##AY542304|MGP|4256|matrix Gla protein##M58549|MGP|4256|matrix Gla protein##BC070314|MGP|4256|matrix Gla protein##X53331|MGP|4256|matrix Gla protein##BC005272|MGP|4256|matrix Gla protein##AK312029|MGP|4256|matrix Gla protein##BC093078|MGP|4256|matrix Gla protein##NM_000900|MGP|4256|matrix Gla protein##NM_001190839|MGP|4256|matrix Gla protein##AY829433|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AY829434|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##NM_021071|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AK291662|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_006205|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##DQ980604|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##D45399|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor	0.995777	0.0	
chr2	240817954	240818114	reg1012287.p1	4.813	+	TSC_hg19_v1_chr2_-_240323341 AK308791	-494686	-	TSC_hg19_v1_chr2_-_240322695 BC039904	-495336	-	TSC_hg19_v1_chr2_-_240322657 AB006626 NM_006037	-495386	-	AF453834 TSC_hg19_v1_chr2_-_240964750 CU678462 DQ891011 DQ894191 BC031332 AF087661 AB209440 AK290778 BC003417 AF087854	146727	-	TSC_hg19_v1_chr2_-_240964807 NM_004544	146778	-	NM_001005853 BC137561 BC137562	151841	-	AK308791|HDAC4|9759|histone deacetylase 4##BC039904|HDAC4|9759|histone deacetylase 4##AB006626|HDAC4|9759|histone deacetylase 4##NM_006037|HDAC4|9759|histone deacetylase 4##AF453834|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ891011|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##DQ894191|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC031332|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087661|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AB209440|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AK290778|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##BC003417|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##AF087854|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##NM_004544|NDUFA10|4705|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa##NM_001005853|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##BC137561|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2##BC137562|OR6B2|389090|olfactory receptor, family 6, subfamily B, member 2	0.97091	0.0	denovo_WM_7:-16:0.845
chr3	46137022	46137165	reg1009544.p2	4.813	+	AB189434 AB189435 NM_001024644 NM_005283	-68115	-	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	-99772	-	NM_006564 Y13248	-152121	+	BC064991 TSC_hg19_v1_chr3_-_46249804 L10918 BC051306 NM_001295	112716	-	NM_001164680 NM_001837 NM_178328 NM_178329 AF262300 AF262299 AF224495 AF262301 AF262302 AF262303 AF262304 BC130318 BC130320 BC110297	146823	+	AK292685 NM_001123041 NM_001123396	258136	+	AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##BC064991|CCR1|1230|chemokine (C-C motif) receptor 1##L10918|CCR1|1230|chemokine (C-C motif) receptor 1##BC051306|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001295|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001164680|CCR3|1232|chemokine (C-C motif) receptor 3##NM_001837|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178328|CCR3|1232|chemokine (C-C motif) receptor 3##NM_178329|CCR3|1232|chemokine (C-C motif) receptor 3##AF262300|CCR3|1232|chemokine (C-C motif) receptor 3##AF262299|CCR3|1232|chemokine (C-C motif) receptor 3##AF224495|CCR3|1232|chemokine (C-C motif) receptor 3##AF262301|CCR3|1232|chemokine (C-C motif) receptor 3##AF262302|CCR3|1232|chemokine (C-C motif) receptor 3##AF262303|CCR3|1232|chemokine (C-C motif) receptor 3##AF262304|CCR3|1232|chemokine (C-C motif) receptor 3##BC130318|CCR3|1232|chemokine (C-C motif) receptor 3##BC130320|CCR3|1232|chemokine (C-C motif) receptor 3##BC110297|CCR3|1232|chemokine (C-C motif) receptor 3##AK292685|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123041|CCR2|729230|chemokine (C-C motif) receptor 2##NM_001123396|CCR2|729230|chemokine (C-C motif) receptor 2	0.987547	0.0	denovo_WM_7:26:0.766
chr6	423061	423241	reg1001803.p2	4.813	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	-31387	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-130654	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-131066	+	AF508547 BC101697 BC101699 NM_148959	233802	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	269939	-	BC053850 NM_033260	889523	+	NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1	1.73214	0.0	denovo_WM_7:-59:0.449	denovo_WM_7:-61:0.257	denovo_WM_7:-74:0.463	denovo_WM_7:-76:0.233
chr7	33784129	33784272	reg1010743.p1	4.813	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-615119	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-635223	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-681878	-	AK289963 NM_133468 AK096150 BC060868	160942	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	913719	+	DQ287932 NM_015283	1293452	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	0.76463	0.012961	
chr8	52867573	52867747	reg1013641.p2	4.813	+	AK299452 TSC_hg19_v1_chr8_+_52812239	-55437	+	TSC_hg19_v1_chr8_-_52811724 NM_052937	-55933	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	-56058	-	BC026316 AB011107 AK311188 BC031075 NM_014682 BC025662	454660	-	BC130641 BC130643 BC144534 AY358213 NM_207413	610333	-	AK291699 D86958 TSC_hg19_v1_chr8_-_53626990	759326	-	NM_052937|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AB011107|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##AK311188|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##BC031075|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##NM_014682|ST18|9705|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)##BC130641|FAM150A|389658|family with sequence similarity 150, member A##BC130643|FAM150A|389658|family with sequence similarity 150, member A##BC144534|FAM150A|389658|family with sequence similarity 150, member A##AY358213|FAM150A|389658|family with sequence similarity 150, member A##NM_207413|FAM150A|389658|family with sequence similarity 150, member A##AK291699|RB1CC1|9821|RB1-inducible coiled-coil 1##D86958|RB1CC1|9821|RB1-inducible coiled-coil 1	0.38069	0.0	denovo_WM_7:-22:0.345
chr9	45438061	45438241	reg1004238.p3	4.813	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1753308	+	NM_001145196	-1807422	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-2304664	-	TSC_hg19_v1_chr9_+_45441926 BC006438	3775	+	BC040528 NM_001113541 NM_015667	20071458	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21019150	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.763004	0.0	denovo_WM_7:84:0.735
chr16	87799812	87799992	reg1007154.p2	4.812	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-332	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-387	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-163192	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	103173	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	170245	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	185266	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.99282	0.0	denovo_WM_7:-10:0.202	denovo_WM_7:-11:0.774
chr17	28049728	28049846	reg1009024.p2	4.812	+	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-99936	-	AK096431 NM_032854	-101395	-	TSC_hg19_v1_chr17_+_27920483 NM_152345	-129285	+	TSC_hg19_v1_chr17_-_28088446 BC011636	38671	-	AK302745 AK303060 NM_001145053 AK299608	207109	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	207346	-	BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##NM_152345|ANKRD13B|124930|ankyrin repeat domain 13B##BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)	0.118116	0.0	
chr17	73247749	73247842	reg1008243.p1	4.812	+	TSC_hg19_v1_chr17_+_73201801 AK302426 AF514995 BC000697 AK297574 AK295694 AK022611 AK298519 AL833893 CU674344 AF498261	-45991	+	TSC_hg19_v1_chr17_+_73201533 NM_024844	-46233	+	TSC_hg19_v1_chr17_-_73179099 NM_001005849 NM_006937	-68687	-	TSC_hg19_v1_chr17_-_73257685 AK302423 AK304692 AK291685 AK296843 AF190864 D63876 AF219138 AF219139 AL833603 BC070044	9874	-	TSC_hg19_v1_chr17_-_73257688 AK293291 BC051732	9898	-	BC063285 TSC_hg19_v1_chr17_-_73257705 AK291651 NM_014001 NM_138619	9920	-	AK302426|NUP85|79902|nucleoporin 85kDa##AF514995|NUP85|79902|nucleoporin 85kDa##BC000697|NUP85|79902|nucleoporin 85kDa##AK297574|NUP85|79902|nucleoporin 85kDa##AK295694|NUP85|79902|nucleoporin 85kDa##AK022611|NUP85|79902|nucleoporin 85kDa##AK298519|NUP85|79902|nucleoporin 85kDa##AL833893|NUP85|79902|nucleoporin 85kDa##AF498261|NUP85|79902|nucleoporin 85kDa##NM_024844|NUP85|79902|nucleoporin 85kDa##NM_001005849|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##NM_006937|SUMO2|6613|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)##AK302423|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AK304692|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AK291685|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AK296843|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AF190864|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##D63876|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AF219138|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AF219139|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AL833603|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##BC070044|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AK293291|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##BC051732|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##BC063285|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##AK291651|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##NM_014001|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3##NM_138619|GGA3|23163|golgi-associated, gamma adaptin ear containing, ARF binding protein 3	2.045294	0.0	denovo_WM_7:65:0.505	denovo_WM_7:66:0.244	denovo_WM_7:67:0.244
chr3	16882568	16882748	reg1010521.p1	4.812	+	U65918 U66726 U66078 BC027595 NM_001351	-235692	-	BX648638 AK303026 NM_001190811	-236388	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-327434	-	AB029015 NM_001144382	43793	+	BC036392 NM_015184	91923	+	AK310539 NM_001134381	858853	-	U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5	0.9984	0.0	
chr9	121127088	121127214	reg1012808.p2	4.812	+	TSC_hg19_v1_chr9_+_120466680 U93091 BC025294 AK226155 U88880 BC117422 BC143841 AB445638	-660464	+	TSC_hg19_v1_chr9_+_120466621 AK293068 AK303730	-660537	+	TSC_hg19_v1_chr9_+_120466459 NM_138554 AK290053	-660687	+	BC071702 BC065196 AF027734 BC021560 AK293649 TSC_hg19_v1_chr9_-_122131727 NM_014618	1004507	-	AB489151 BC136275 BC143732 BC143734 BC143753 BC143755 BC143760 BC143762 BC143764 TSC_hg19_v1_chr9_-_123342438 AF448860 AB046853 BC146782 BC019577 BX537421 AL833481 BX537759 AK122913 BX537708 NM_001011649 NM_018249	2215202	-	TSC_hg19_v1_chr9_-_123476749 AY358370 AK295380 NM_001080497	2349566	-	U93091|TLR4|7099|toll-like receptor 4##BC025294|TLR4|7099|toll-like receptor 4##AK226155|TLR4|7099|toll-like receptor 4##U88880|TLR4|7099|toll-like receptor 4##BC117422|TLR4|7099|toll-like receptor 4##BC143841|TLR4|7099|toll-like receptor 4##AB445638|TLR4|7099|toll-like receptor 4##AK293068|TLR4|7099|toll-like receptor 4##AK303730|TLR4|7099|toll-like receptor 4##NM_138554|TLR4|7099|toll-like receptor 4##AK290053|TLR4|7099|toll-like receptor 4##BC071702|DBC1|1620|deleted in bladder cancer 1##BC065196|DBC1|1620|deleted in bladder cancer 1##AF027734|DBC1|1620|deleted in bladder cancer 1##BC021560|DBC1|1620|deleted in bladder cancer 1##AK293649|DBC1|1620|deleted in bladder cancer 1##NM_014618|DBC1|1620|deleted in bladder cancer 1##BC136275|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143732|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143734|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143753|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143755|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143760|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143762|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143764|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AF448860|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AB046853|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC146782|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC019577|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537421|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AL833481|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537759|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AK122913|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537708|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_001011649|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_018249|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AY358370|MEGF9|1955|multiple EGF-like-domains 9##AK295380|MEGF9|1955|multiple EGF-like-domains 9##NM_001080497|MEGF9|1955|multiple EGF-like-domains 9	0.0	0.0	
chr12	112567023	112567203	reg1004147.p2	4.811	+	TSC_hg19_v1_chr12_+_112563363 AK122620 AK291331 AK295474 AB007447	-3722	+	TSC_hg19_v1_chr12_+_112563341 AK309916 AK312601 NM_001143906 NM_006700	-3791	+	TSC_hg19_v1_chr12_-_112546588 BC065481 AB054990 AK309772 AK307494 BC095484 BX647450 BC034357 BX641140 AK292485 BC113585 BC113587 NM_024953	-20515	-	TSC_hg19_v1_chr12_-_112630525 AF174498	63415	-	TSC_hg19_v1_chr12_-_112819755 NM_001109662	252712	-	TSC_hg19_v1_chr12_-_112847411 BC022444 X69391 BC004138 BC104824 BC104826 AK308680 NM_000970 NM_001024662	280292	-	AK122620|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK291331|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK295474|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AB007447|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK309916|TRAFD1|10906|TRAF-type zinc finger domain containing 1##AK312601|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_001143906|TRAFD1|10906|TRAF-type zinc finger domain containing 1##NM_006700|TRAFD1|10906|TRAF-type zinc finger domain containing 1##BC065481|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AB054990|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK309772|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK307494|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC095484|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX647450|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC034357|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BX641140|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AK292485|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113585|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##BC113587|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##NM_024953|NAA25|80018|N(alpha)-acetyltransferase 25, NatB auxiliary subunit##AF174498|C12orf51|283450|chromosome 12 open reading frame 51##NM_001109662|C12orf51|283450|chromosome 12 open reading frame 51##BC022444|RPL6|6128|ribosomal protein L6##X69391|RPL6|6128|ribosomal protein L6##BC004138|RPL6|6128|ribosomal protein L6##BC104824|RPL6|6128|ribosomal protein L6##BC104826|RPL6|6128|ribosomal protein L6##NM_000970|RPL6|6128|ribosomal protein L6##NM_001024662|RPL6|6128|ribosomal protein L6	0.915575	0.0	
chr5	399868	399954	reg1013024.p1	4.811	+	AB033060 BC151852 BC152406 EU293605 NM_001242412 NM_020731	-95621	+	AK308872 TSC_hg19_v1_chr5_+_271775 BC106706 U58773 DQ891163 DQ894344 BT020072	-128106	+	TSC_hg19_v1_chr5_+_271772 BC012384 BC050597 BC110291 AK001917	-128143	+	TSC_hg19_v1_chr5_-_443213 BC014011 BC029796 NM_138464	43319	-	TSC_hg19_v1_chr5_+_443320 AK074086 GU727644 NM_007277 BC064569	43439	+	BC045808 TSC_hg19_v1_chr5_-_473152 BC086861 BC072677 BC064928 AF370427 AK023178	73201	-	AB033060|AHRR|57491|aryl-hydrocarbon receptor repressor##BC151852|AHRR|57491|aryl-hydrocarbon receptor repressor##BC152406|AHRR|57491|aryl-hydrocarbon receptor repressor##EU293605|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_001242412|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_020731|AHRR|57491|aryl-hydrocarbon receptor repressor##AK308872|PDCD6|10016|programmed cell death 6##BC106706|PDCD6|10016|programmed cell death 6##U58773|PDCD6|10016|programmed cell death 6##DQ891163|PDCD6|10016|programmed cell death 6##DQ894344|PDCD6|10016|programmed cell death 6##BT020072|PDCD6|10016|programmed cell death 6##BC012384|PDCD6|10016|programmed cell death 6##BC050597|PDCD6|10016|programmed cell death 6##BC110291|PDCD6|10016|programmed cell death 6##AK001917|PDCD6|10016|programmed cell death 6##BC014011|C5orf55|116349|chromosome 5 open reading frame 55##BC029796|C5orf55|116349|chromosome 5 open reading frame 55##NM_138464|C5orf55|116349|chromosome 5 open reading frame 55##AK074086|EXOC3|11336|exocyst complex component 3##GU727644|EXOC3|11336|exocyst complex component 3##NM_007277|EXOC3|11336|exocyst complex component 3##BC064569|EXOC3|11336|exocyst complex component 3##BC045808|PP7080|25845|uncharacterized LOC25845##BC086861|PP7080|25845|uncharacterized LOC25845##BC072677|PP7080|25845|uncharacterized LOC25845##AF370427|PP7080|25845|uncharacterized LOC25845	0.0	0.134568	
chrX	152974023	152974096	reg1007766.p1	4.811	+	AK295495 NM_001142806	-19094	+	BC081558 NM_001142805 NM_005629	-20308	+	AK309148 AK296203 NM_001039582 TSC_hg19_v1_chrX_-_152939817	-34265	-	AK223059 TSC_hg19_v1_chrX_-_152989354	15277	-	TSC_hg19_v1_chrX_-_152989522 AK125631 AK057613 NM_001139457 NM_001139441	15496	-	TSC_hg19_v1_chrX_-_152989810 X81817	15754	-	AK295495|SLC6A8|6535|solute carrier family 6 (neurotransmitter transporter, creatine), member 8##NM_001142806|SLC6A8|6535|solute carrier family 6 (neurotransmitter transporter, creatine), member 8##BC081558|SLC6A8|6535|solute carrier family 6 (neurotransmitter transporter, creatine), member 8##NM_001142805|SLC6A8|6535|solute carrier family 6 (neurotransmitter transporter, creatine), member 8##NM_005629|SLC6A8|6535|solute carrier family 6 (neurotransmitter transporter, creatine), member 8##AK309148|PNCK|139728|pregnancy up-regulated non-ubiquitously expressed CaM kinase##AK296203|PNCK|139728|pregnancy up-regulated non-ubiquitously expressed CaM kinase##NM_001039582|PNCK|139728|pregnancy up-regulated non-ubiquitously expressed CaM kinase##AK223059|BCAP31|10134|B-cell receptor-associated protein 31##AK125631|BCAP31|10134|B-cell receptor-associated protein 31##AK057613|BCAP31|10134|B-cell receptor-associated protein 31##NM_001139457|BCAP31|10134|B-cell receptor-associated protein 31##NM_001139441|BCAP31|10134|B-cell receptor-associated protein 31	0.019072	0.780926	CTCF.p2:-48:0.781
chr18	12659964	12660084	reg1013199.p1	4.810	+	AF068295 AF161378 NM_147163	-1287	+	AK095621 TSC_hg19_v1_chr18_+_12658217	-1820	+	NM_001128626 NM_020148 TSC_hg19_v1_chr18_-_12657981 AB032961	-2037	-	TSC_hg19_v1_chr18_-_12702689 AK022604 BC033026 AL833727 BC026307 NM_024899 AK303117	42651	-	TSC_hg19_v1_chr18_-_12702776 AK298223	42740	-	TSC_hg19_v1_chr18_+_12703040 NM_020232 AK225882 AF168712 AK057005 BC013356 CU680576	43012	+	AF068295|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF161378|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##NM_147163|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##NM_001128626|SPIRE1|56907|spire homolog 1 (Drosophila)##NM_020148|SPIRE1|56907|spire homolog 1 (Drosophila)##AB032961|SPIRE1|56907|spire homolog 1 (Drosophila)##AK022604|CEP76|79959|centrosomal protein 76kDa##BC033026|CEP76|79959|centrosomal protein 76kDa##AL833727|CEP76|79959|centrosomal protein 76kDa##BC026307|CEP76|79959|centrosomal protein 76kDa##NM_024899|CEP76|79959|centrosomal protein 76kDa##AK303117|CEP76|79959|centrosomal protein 76kDa##AK298223|CEP76|79959|centrosomal protein 76kDa##NM_020232|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK225882|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AF168712|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##AK057005|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2##BC013356|PSMG2|56984|proteasome (prosome, macropain) assembly chaperone 2	0.0	0.499292	CTCF.p2:16:0.499
chr19	21211393	21211554	reg1012050.p2	4.810	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-7992	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-105387	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-252364	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	53530	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	113383	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	300720	-	AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708	0.994828	0.0	denovo_WM_7:29:0.241	denovo_WM_7:30:0.713
chr10	90844084	90844191	reg1003104.p1	4.809	+	AK311424 TSC_hg19_v1_chr10_+_90751184 AK311164 AK311499	-93016	+	TSC_hg19_v1_chr10_-_90751090 AY692464 NM_001141945	-93087	-	TSC_hg19_v1_chr10_+_90750599 AK290978 X63717 M67454 X83490 X83491 X83492 X83493 DQ894675 AY495076 CR450307 EU481974 FJ373045 FJ373046 FM246457 FM246458 FM246459 X89101 Z47993 Z47994 Z47995 Z66556 Z70519 Z70520	-93629	+	CU687230 DQ892026 DQ895218 BC072430 AF059214 BC017843 NM_003956 AK314865	122923	-	U08464 Z31690 TSC_hg19_v1_chr10_-_91011533 AK222760 AK290241 AK297079 AK314665 M74775	167393	-	AK130882 TSC_hg19_v1_chr10_-_91011565	167430	-	AK311424|FAS|355|Fas (TNF receptor superfamily, member 6)##AK311164|FAS|355|Fas (TNF receptor superfamily, member 6)##AK311499|FAS|355|Fas (TNF receptor superfamily, member 6)##AY692464|ACTA2|59|actin, alpha 2, smooth muscle, aorta##NM_001141945|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK290978|FAS|355|Fas (TNF receptor superfamily, member 6)##X63717|FAS|355|Fas (TNF receptor superfamily, member 6)##M67454|FAS|355|Fas (TNF receptor superfamily, member 6)##X83490|FAS|355|Fas (TNF receptor superfamily, member 6)##X83491|FAS|355|Fas (TNF receptor superfamily, member 6)##X83492|FAS|355|Fas (TNF receptor superfamily, member 6)##X83493|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ894675|FAS|355|Fas (TNF receptor superfamily, member 6)##AY495076|FAS|355|Fas (TNF receptor superfamily, member 6)##CR450307|FAS|355|Fas (TNF receptor superfamily, member 6)##EU481974|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373045|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373046|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246457|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246458|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246459|FAS|355|Fas (TNF receptor superfamily, member 6)##X89101|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47993|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47994|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47995|FAS|355|Fas (TNF receptor superfamily, member 6)##Z66556|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70519|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70520|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ892026|CH25H|9023|cholesterol 25-hydroxylase##DQ895218|CH25H|9023|cholesterol 25-hydroxylase##BC072430|CH25H|9023|cholesterol 25-hydroxylase##AF059214|CH25H|9023|cholesterol 25-hydroxylase##BC017843|CH25H|9023|cholesterol 25-hydroxylase##NM_003956|CH25H|9023|cholesterol 25-hydroxylase##AK314865|CH25H|9023|cholesterol 25-hydroxylase##U08464|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##Z31690|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK222760|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK290241|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK297079|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK314665|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##M74775|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK130882|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase	3.630712	0.0	denovo_WM_7:56:0.796	denovo_WM_7:71:0.835	denovo_WM_7:-105:0.849
chr2	237876649	237876779	reg1011039.p1	4.809	+	NM_020311 TSC_hg19_v1_chr2_+_237478467 AK023507 AK291659 AF030297	-398286	+	BC043504 NM_024726 AK294105 BC028699	-460582	-	NM_212556 BX647589	-703720	-	BC036499 NM_006710 NM_198189	117304	+	TSC_hg19_v1_chr2_-_237994424 AK056246	117723	-	TSC_hg19_v1_chr2_+_237994528 AK294078 AK313437	117806	+	NM_020311|CXCR7|57007|chemokine (C-X-C motif) receptor 7##AK291659|CXCR7|57007|chemokine (C-X-C motif) receptor 7##AF030297|CXCR7|57007|chemokine (C-X-C motif) receptor 7##BC043504|IQCA1|79781|IQ motif containing with AAA domain 1##NM_024726|IQCA1|79781|IQ motif containing with AAA domain 1##AK294105|IQCA1|79781|IQ motif containing with AAA domain 1##BC028699|IQCA1|79781|IQ motif containing with AAA domain 1##NM_212556|ASB18|401036|ankyrin repeat and SOCS box containing 18##BX647589|ASB18|401036|ankyrin repeat and SOCS box containing 18##BC036499|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##NM_006710|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##NM_198189|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##AK056246|LOC401037|401037|uncharacterized LOC401037##AK294078|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)##AK313437|COPS8|10920|COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis)	0.993033	0.0	denovo_WM_7:26:0.314	denovo_WM_7:27:0.314	denovo_WM_7:28:0.314
chr8	136464721	136464849	reg1009929.p1	4.809	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-739511	-	TSC_hg19_v1_chr8_-_135725053 AB463359	-739706	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	-755991	-	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	4873	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	5416	+	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	3044321	-	BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B	0.688487	0.070824	denovo_WM_7:52:0.437
chr11	108045089	108045255	reg1003556.p1	4.808	+	TSC_hg19_v1_chr11_+_107992293 D90228 NM_000019 AK312574 BC010942 BC063853 AB590491	-52881	+	X81882 BC017838 TSC_hg19_v1_chr11_+_107880062 CU687672 AF017061 AF327710	-165143	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	-165545	+	U58852 AB527441 TSC_hg19_v1_chr11_-_108093291 BC136270 AK291687 X97186	48111	-	D83243 BC050561 TSC_hg19_v1_chr11_-_108093366 BC040356 BC094769 AK290020 NM_002519	48200	-	NM_000051	48386	+	D90228|ACAT1|38|acetyl-CoA acetyltransferase 1##NM_000019|ACAT1|38|acetyl-CoA acetyltransferase 1##AK312574|ACAT1|38|acetyl-CoA acetyltransferase 1##BC010942|ACAT1|38|acetyl-CoA acetyltransferase 1##BC063853|ACAT1|38|acetyl-CoA acetyltransferase 1##X81882|CUL5|8065|cullin 5##BC017838|CUL5|8065|cullin 5##AF017061|CUL5|8065|cullin 5##AF327710|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5##U58852|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC136270|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK291687|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##X97186|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##D83243|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC050561|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC040356|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC094769|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK290020|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_002519|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_000051|ATM|472|ataxia telangiectasia mutated	0.0	0.0	
chr19	37808620	37808800	reg1008630.p2	4.808	+	AK093182 AX747975 AY438646 NM_152604	-91345	+	TSC_hg19_v1_chr19_+_37709098 AK122892	-99562	+	BC051277 BC067088 BC080550 TSC_hg19_v1_chr19_-_37701446 AY147015 NM_152279	-107293	-	TSC_hg19_v1_chr19_+_37808794 AK056243	115	+	TSC_hg19_v1_chr19_+_37825560 AK301601 AB013897 AK299969 AK223616 BC017256 NM_181786 BC010024	16845	+	TSC_hg19_v1_chr19_+_37862089 NM_032453 BC014325 AK301135 AK091585 AX747074	53371	+	AK093182|ZNF383|163087|zinc finger protein 383##AY438646|ZNF383|163087|zinc finger protein 383##NM_152604|ZNF383|163087|zinc finger protein 383##AK122892|ZNF383|163087|zinc finger protein 383##BC051277|ZNF585B|92285|zinc finger protein 585B##BC067088|ZNF585B|92285|zinc finger protein 585B##BC080550|ZNF585B|92285|zinc finger protein 585B##AY147015|ZNF585B|92285|zinc finger protein 585B##NM_152279|ZNF585B|92285|zinc finger protein 585B##AK056243|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK301601|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AB013897|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK299969|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##AK223616|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC017256|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_181786|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##BC010024|HKR1|284459|HKR1, GLI-Kruppel zinc finger family member##NM_032453|ZNF527|84503|zinc finger protein 527##BC014325|ZNF527|84503|zinc finger protein 527##AK301135|ZNF527|84503|zinc finger protein 527##AK091585|ZNF527|84503|zinc finger protein 527	0.0	0.0	
chr6	6806668	6806813	reg1009395.p1	4.808	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-81579	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-217790	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-485830	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	301086	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	301295	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	301483	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	0.994915	0.0	denovo_WM_7:-35:0.233	denovo_WM_7:-36:0.761
chr7	99982754	99982904	reg1010405.p1	4.808	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	-11624	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	-11733	+	AJ400845 NM_178238 AF161081	-27198	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	43473	-	NM_001194990 NM_001194991 NM_001194992 TSC_hg19_v1_chr7_+_100026412	43583	+	TSC_hg19_v1_chr7_+_100026415 AK055964	43599	+	AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_001194990|MEPCE|56257|methylphosphate capping enzyme##NM_001194991|MEPCE|56257|methylphosphate capping enzyme##NM_001194992|MEPCE|56257|methylphosphate capping enzyme##AK055964|MEPCE|56257|methylphosphate capping enzyme	0.0	0.0	
chrX	1599134	1599314	reg1001501.p1	4.808	+	AK301844 NM_001173473	-26573	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-27423	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-88255	-	BC043610 GQ280263 NM_178129 AK126147	56814	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	111305	+	NM_004043 U11090	115123	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.979374	0.0	denovo_WM_7:-28:0.270	denovo_WM_7:-31:0.427	denovo_WM_7:68:0.314	denovo_WM_7:70:0.600
chr12	8817609	8817705	reg1009457.p2	4.807	+	AK124368 TSC_hg19_v1_chr12_-_8815486	-2175	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	-2256	-	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	-2361	-	TSC_hg19_v1_chr12_+_8850570 AK302847 NM_020734 BC006368	32947	+	NM_144670 AK122624 AK290355 AL832139 BX648231	157525	+	TSC_hg19_v1_chr12_+_9067153 AB209063 AK293893 NM_004426 BC073964 U89277 BC157850	249612	+	AK124368|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##AK302847|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_020734|RIMKLB|57494|ribosomal modification protein rimK-like family member B##BC006368|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_144670|A2ML1|144568|alpha-2-macroglobulin-like 1##AK122624|A2ML1|144568|alpha-2-macroglobulin-like 1##AK290355|A2ML1|144568|alpha-2-macroglobulin-like 1##AL832139|A2ML1|144568|alpha-2-macroglobulin-like 1##BX648231|A2ML1|144568|alpha-2-macroglobulin-like 1##AB209063|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##AK293893|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##NM_004426|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC073964|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##U89277|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC157850|PHC1|1911|polyhomeotic homolog 1 (Drosophila)	1.005203	0.0	
chr18	52989392	52989468	reg1000282.p2	4.807	+	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	-428	-	FR748222 NM_001243236	-19648	-	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-362743	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	79408	-	FR748208 TSC_hg19_v1_chr18_-_53068947	79514	-	AK095041 NM_001243232	81795	-	M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4##AK095041|TCF4|6925|transcription factor 4##NM_001243232|TCF4|6925|transcription factor 4	2.767057	0.0	denovo_WM_7:67:0.755	denovo_WM_7:-83:0.381	denovo_WM_7:-84:0.328	denovo_WM_7:-85:0.240	denovo_WM_7:-103:0.650
chr13	60012132	60012280	reg1011865.p2	4.806	+	TSC_hg19_v1_chr13_+_58207858 AK307545	-1804310	+	AF029343 AK289980 TSC_hg19_v1_chr13_+_58205949	-1806259	+	NM_001040429	-1806418	+	BC041395 TSC_hg19_v1_chr13_-_60325215	312938	-	BC048963 BC068504 AL137718 AK307652 BC034952 NM_030932	575114	-	AB244756 AB244757 AB244758 AY818645 AK298509 AY750055 TSC_hg19_v1_chr13_-_60738063 AK316474 AK092024 AX747319 BX649186	725775	-	AK307545|PCDH17|27253|protocadherin 17##AF029343|PCDH17|27253|protocadherin 17##AK289980|PCDH17|27253|protocadherin 17##NM_001040429|PCDH17|27253|protocadherin 17##BC048963|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC068504|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AL137718|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK307652|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BC034952|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##NM_030932|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244756|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244757|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AB244758|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY818645|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK298509|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AY750055|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK316474|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK092024|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##BX649186|DIAPH3|81624|diaphanous homolog 3 (Drosophila)	0.0	0.0	
chr16	1522829	1523008	reg1011201.p1	4.806	+	CU680387 TSC_hg19_v1_chr16_+_1496635	-26285	+	NM_001143980	-28429	-	NM_001010878 AB463766	-43574	-	Z67743 TSC_hg19_v1_chr16_-_1524997 CU680386 DQ896433 EU176438	2045	-	AK292136 TSC_hg19_v1_chr16_-_1525008 BC011638 BC012737 AF224741	2091	-	TSC_hg19_v1_chr16_-_1525035 AK056551 AK291404	2111	-	NM_001143980|CCDC154|645811|coiled-coil domain containing 154##NM_001010878|C16orf91|283951|chromosome 16 open reading frame 91##Z67743|CLCN7|1186|chloride channel 7##DQ896433|CLCN7|1186|chloride channel 7##EU176438|CLCN7|1186|chloride channel 7##AK292136|CLCN7|1186|chloride channel 7##BC012737|CLCN7|1186|chloride channel 7##AF224741|CLCN7|1186|chloride channel 7##AK056551|CLCN7|1186|chloride channel 7##AK291404|CLCN7|1186|chloride channel 7	1.982511	0.0	denovo_WM_7:25:0.537	denovo_WM_7:26:0.347	denovo_WM_7:-95:0.443	denovo_WM_7:-96:0.443
chr2	8418487	8418639	reg1009754.p1	4.806	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1360976	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1400700	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1411860	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	403640	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	559156	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	725258	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.998796	0.0	denovo_WM_7:8:0.885
chr15	59019280	59019424	reg1008785.p1	4.805	+	NM_000236 X07228 AK293324 AK309448 TSC_hg19_v1_chr15_+_58724189 D83548 BC132825 BC136495 J03895 J03540 AB528021 HQ258274	-295150	+	AK300055 NM_020980 AK313214 AF016495 AB008775 BC026258	-588866	+	NM_001206897 NM_003888 NM_170696	-661232	-	TSC_hg19_v1_chr15_-_59041794 BC055087 BC104659	22437	-	TSC_hg19_v1_chr15_-_59041833 AK300472	22470	-	TSC_hg19_v1_chr15_-_59041988 BC126253 BC143935 NM_001110	22702	-	NM_000236|LIPC|3990|lipase, hepatic##X07228|LIPC|3990|lipase, hepatic##AK293324|LIPC|3990|lipase, hepatic##AK309448|LIPC|3990|lipase, hepatic##D83548|LIPC|3990|lipase, hepatic##BC132825|LIPC|3990|lipase, hepatic##BC136495|LIPC|3990|lipase, hepatic##J03895|LIPC|3990|lipase, hepatic##J03540|LIPC|3990|lipase, hepatic##HQ258274|LIPC|3990|lipase, hepatic##AK300055|AQP9|366|aquaporin 9##NM_020980|AQP9|366|aquaporin 9##AK313214|AQP9|366|aquaporin 9##AF016495|AQP9|366|aquaporin 9##AB008775|AQP9|366|aquaporin 9##BC026258|AQP9|366|aquaporin 9##NM_001206897|ALDH1A2|8854|aldehyde dehydrogenase 1 family, member A2##NM_003888|ALDH1A2|8854|aldehyde dehydrogenase 1 family, member A2##NM_170696|ALDH1A2|8854|aldehyde dehydrogenase 1 family, member A2##BC055087|ADAM10|102|ADAM metallopeptidase domain 10##BC104659|ADAM10|102|ADAM metallopeptidase domain 10##AK300472|ADAM10|102|ADAM metallopeptidase domain 10##BC126253|ADAM10|102|ADAM metallopeptidase domain 10##BC143935|ADAM10|102|ADAM metallopeptidase domain 10##NM_001110|ADAM10|102|ADAM metallopeptidase domain 10	1.984387	0.0	denovo_WM_7:29:0.213	denovo_WM_7:30:0.571	denovo_WM_7:31:0.210	denovo_WM_7:45:0.635	denovo_WM_7:46:0.252
chr16	57623683	57623823	reg1002354.p2	4.805	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	-47165	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	-47199	+	BC008285 BC009941 NM_033212	-53288	-	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	29902	+	NM_001145770 NM_005682 AK075270 AY358400	30195	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	38701	+	BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56##NM_001145770|GPR56|9289|G protein-coupled receptor 56##NM_005682|GPR56|9289|G protein-coupled receptor 56##AK075270|GPR56|9289|G protein-coupled receptor 56##AY358400|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56	0.998681	0.0	denovo_WM_7:-65:0.314	denovo_WM_7:-66:0.313	denovo_WM_7:-67:0.313
chr18	28810607	28810749	reg1010772.p2	4.805	+	Z34522 NM_004948 NM_024421 X72925	-67897	-	TSC_hg19_v1_chr18_-_28682275 EF017811 EF017812 X56807 AK297029 AK290313 BX648425 BC063291 NM_004949 NM_024422	-128487	-	CR749226 TSC_hg19_v1_chr18_-_28681542	-129190	-	AF097935 NM_001942 X56654 AB591022	87479	+	AY177664 NM_001134453 NM_177986 AY168788 AY228236 BC132907 BC132909 AY227350	146128	+	AK290367 NM_001944 M76482	217066	+	Z34522|DSC1|1823|desmocollin 1##NM_004948|DSC1|1823|desmocollin 1##NM_024421|DSC1|1823|desmocollin 1##X72925|DSC1|1823|desmocollin 1##EF017811|DSC2|1824|desmocollin 2##EF017812|DSC2|1824|desmocollin 2##X56807|DSC2|1824|desmocollin 2##AK297029|DSC2|1824|desmocollin 2##AK290313|DSC2|1824|desmocollin 2##BX648425|DSC2|1824|desmocollin 2##BC063291|DSC2|1824|desmocollin 2##NM_004949|DSC2|1824|desmocollin 2##NM_024422|DSC2|1824|desmocollin 2##CR749226|DSC2|1824|desmocollin 2##AF097935|DSG1|1828|desmoglein 1##NM_001942|DSG1|1828|desmoglein 1##X56654|DSG1|1828|desmoglein 1##AY177664|DSG4|147409|desmoglein 4##NM_001134453|DSG4|147409|desmoglein 4##NM_177986|DSG4|147409|desmoglein 4##AY168788|DSG4|147409|desmoglein 4##AY228236|DSG4|147409|desmoglein 4##BC132907|DSG4|147409|desmoglein 4##BC132909|DSG4|147409|desmoglein 4##AY227350|DSG4|147409|desmoglein 4##AK290367|DSG3|1830|desmoglein 3##NM_001944|DSG3|1830|desmoglein 3##M76482|DSG3|1830|desmoglein 3	0.652611	0.0	denovo_WM_7:-100:0.506
chr3	182627196	182627289	reg1010911.p1	4.805	+	TSC_hg19_v1_chr3_+_182511414 AB527450	-115763	+	TSC_hg19_v1_chr3_+_182511375 AF156548	-115853	+	AK296750 TSC_hg19_v1_chr3_+_182511291	-115947	+	AF456425 AF456426 TSC_hg19_v1_chr3_-_182698327 AF292100 AK314480 BC009478 AK056335 AK297328 NM_020640	71087	-	AB587379 CU678606 TSC_hg19_v1_chr3_-_182817309 CR749608 AK316428 AB209737 AL442091 AK294882	190039	-	AK295293 TSC_hg19_v1_chr3_-_182817343 AK023051 AB029826 AF310339 BC004187 BC004214 AF310972 NM_020166	190108	-	AF156548|ATP11B|23200|ATPase, class VI, type 11B##AK296750|ATP11B|23200|ATPase, class VI, type 11B##AF456425|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AF456426|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AF292100|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AK314480|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##BC009478|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AK056335|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##AK297328|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##NM_020640|DCUN1D1|54165|DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)##CR749608|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK316428|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AB209737|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AL442091|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK294882|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK295293|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AK023051|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AB029826|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AF310339|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC004187|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##BC004214|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##AF310972|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##NM_020166|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)	0.98751	0.0	denovo_WM_7:15:0.939
chr3	73129936	73130078	reg1012508.p1	4.805	+	BC051316 BC064501 NM_018029	-19198	+	TSC_hg19_v1_chr3_+_73046081 AF327345 NM_174907 BC128136 BC128137	-83887	+	TSC_hg19_v1_chr3_+_73045984 BC110889	-84016	+	AB384112 BC014432 BC150623 AB029018 BC152417 NM_015009 TSC_hg19_v1_chr3_-_73674093	544031	-	AB384611 BC150608 NM_020872	1440295	-	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	2354142	-	BC051316|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC064501|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##NM_018029|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##AF327345|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##NM_174907|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128136|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128137|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC014432|PDZRN3|23024|PDZ domain containing ring finger 3##BC150623|PDZRN3|23024|PDZ domain containing ring finger 3##AB029018|PDZRN3|23024|PDZ domain containing ring finger 3##BC152417|PDZRN3|23024|PDZ domain containing ring finger 3##NM_015009|PDZRN3|23024|PDZ domain containing ring finger 3##BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene	1.945848	0.0	denovo_WM_7:46:0.816	denovo_WM_7:63:0.936
chr13	52768578	52768721	reg1010575.p1	4.804	+	TSC_hg19_v1_chr13_-_52768573 AK307345 AK307124 AK309380 BX648914 AK027536	-90	-	NM_001146099 NM_002498	-34654	-	NM_152720 TSC_hg19_v1_chr13_-_52733672 BC019916 AK290259	-34923	-	AB044385 TSC_hg19_v1_chr13_-_52980275 BC063842 AK298974 AK315087 AY358149	211629	-	AK096289 NM_018676 NM_199263	211979	-	TSC_hg19_v1_chr13_-_53024744 AF151903 BC050439 BC037279 AK289740 NM_016075	256118	-	AK307345|THSD1P1|374500|thrombospondin, type I, domain containing 1 pseudogene 1##AK307124|THSD1P1|374500|thrombospondin, type I, domain containing 1 pseudogene 1##AK309380|THSD1P1|374500|thrombospondin, type I, domain containing 1 pseudogene 1##BX648914|THSD1P1|374500|thrombospondin, type I, domain containing 1 pseudogene 1##AK027536|THSD1P1|374500|thrombospondin, type I, domain containing 1 pseudogene 1##NM_001146099|NEK3|4752|NIMA (never in mitosis gene a)-related kinase 3##NM_002498|NEK3|4752|NIMA (never in mitosis gene a)-related kinase 3##NM_152720|NEK3|4752|NIMA (never in mitosis gene a)-related kinase 3##BC019916|NEK3|4752|NIMA (never in mitosis gene a)-related kinase 3##AK290259|NEK3|4752|NIMA (never in mitosis gene a)-related kinase 3##AB044385|THSD1|55901|thrombospondin, type I, domain containing 1##BC063842|THSD1|55901|thrombospondin, type I, domain containing 1##AK298974|THSD1|55901|thrombospondin, type I, domain containing 1##AK315087|THSD1|55901|thrombospondin, type I, domain containing 1##AY358149|THSD1|55901|thrombospondin, type I, domain containing 1##AK096289|THSD1|55901|thrombospondin, type I, domain containing 1##NM_018676|THSD1|55901|thrombospondin, type I, domain containing 1##NM_199263|THSD1|55901|thrombospondin, type I, domain containing 1##AF151903|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##BC050439|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##BC037279|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##AK289740|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##NM_016075|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)	0.0	0.0	
chr16	11012716	11012853	reg1012896.p1	4.804	+	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	-41672	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-100236	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-175080	+	BC071683 TSC_hg19_v1_chr16_-_11036171	23382	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	23451	-	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	25659	+	AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A	0.0	0.982495	CTCF.p2:6:0.982
chr17	38085568	38085748	reg1012863.p2	4.804	+	TSC_hg19_v1_chr17_-_38083855 AF373101 BC071833 AX775843 AK075212 BC017087 AF395708 AF373102 AK074811 NM_139280	-1826	-	BC054042 BC050710 AF151043 BC000638 BC018837 TSC_hg19_v1_chr17_-_38078103	-7652	-	AK000409 AK296607 NM_001042471 NM_001165958 NM_001165959	-10786	-	NM_001195545	12068	+	AK096439 NM_178171 BC109197	33586	+	TSC_hg19_v1_chr17_+_38137059 AK054611 AK094206 AK293539 AK300973 NM_002809 BC001684 BC012302	51407	+	AF373101|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC071833|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AX775843|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AK075212|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC017087|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AF395708|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AF373102|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AK074811|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##NM_139280|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC054042|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC050710|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AF151043|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC000638|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC018837|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AK000409|GSDMB|55876|gasdermin B##AK296607|GSDMB|55876|gasdermin B##NM_001042471|GSDMB|55876|gasdermin B##NM_001165958|GSDMB|55876|gasdermin B##NM_001165959|GSDMB|55876|gasdermin B##NM_001195545|LRRC3C|100505591|leucine rich repeat containing 3C##AK096439|GSDMA|284110|gasdermin A##NM_178171|GSDMA|284110|gasdermin A##BC109197|GSDMA|284110|gasdermin A##AK054611|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##AK094206|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##AK293539|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##AK300973|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##NM_002809|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3##BC012302|PSMD3|5709|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	0.0	0.0	
chr20	32031879	32032053	reg1006562.p1	4.804	+	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	-405	-	TSC_hg19_v1_chr20_-_31989330 NM_016082 NM_016408	-42627	-	BC001215 TSC_hg19_v1_chr20_-_31989326 AF152097 BC050706 AK027449 AF161516 AK023992 AK222745 AK292075 AK295342 AK309906 AK314532 AY462283 AY462284	-42652	-	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	45870	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	46005	+	BC015066 NM_001039709 NM_005093 AF069747 AF052212	118211	+	DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_016082|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016408|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC001215|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF152097|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC050706|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK027449|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF161516|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK023992|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK222745|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK292075|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK295342|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK309906|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK314532|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462283|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462284|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	0.0	0.0	
chr5	151135941	151136121	reg1011720.p1	4.804	+	TSC_hg19_v1_chr5_-_151066495 AK096969 AK299441 AK315591 D28381 BC072457 NM_003118	-69523	-	Y00755 BC004974 J03040 TSC_hg19_v1_chr5_-_151066477	-69570	-	AF231022 NM_001447	-187527	-	TSC_hg19_v1_chr5_-_151138170 AK091843 AX747215 NM_004045 AK293063 BC112248 BC112250	2184	-	TSC_hg19_v1_chr5_-_151150991 AB593120	14942	-	TSC_hg19_v1_chr5_+_151151479 BX648012 NM_005754 NM_198395	15441	+	AK096969|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK299441|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK315591|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##D28381|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC072457|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##NM_003118|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##Y00755|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC004974|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##J03040|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AF231022|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##NM_001447|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##AK091843|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##NM_004045|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AK293063|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112248|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##BC112250|ATOX1|475|ATX1 antioxidant protein 1 homolog (yeast)##AB593120|LOC100652758|100652758|uncharacterized LOC100652758##BX648012|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_005754|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_198395|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1	1.179259	0.0	denovo_WM_7:5:0.712	denovo_WM_7:7:0.227
chr5	97913539	97913699	reg1011563.p2	4.804	+	TSC_hg19_v1_chr5_-_96518986 NM_001159749 NM_018343	-1394632	-	TSC_hg19_v1_chr5_-_96518945 AK002021	-1394677	-	TSC_hg19_v1_chr5_-_96518934 AK225348 BC000953	-1394711	-	BC067736 NM_001012761 AK074887 TSC_hg19_v1_chr5_+_98105085	191422	+	BC054860 BC117134 NM_001270 AF006513	348609	-	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	1957454	+	NM_001159749|RIOK2|55781|RIO kinase 2 (yeast)##NM_018343|RIOK2|55781|RIO kinase 2 (yeast)##AK002021|RIOK2|55781|RIO kinase 2 (yeast)##AK225348|RIOK2|55781|RIO kinase 2 (yeast)##BC000953|RIOK2|55781|RIO kinase 2 (yeast)##BC067736|RGMB|285704|RGM domain family, member B##NM_001012761|RGMB|285704|RGM domain family, member B##AK074887|RGMB|285704|RGM domain family, member B##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A	0.999174	0.0	denovo_WM_7:-27:0.239	denovo_WM_7:-28:0.239	denovo_WM_7:-29:0.239	denovo_WM_7:-30:0.239
chr9	100772987	100773123	reg1010858.p1	4.804	+	TSC_hg19_v1_chr9_+_100745672 Y07569	-27328	+	TSC_hg19_v1_chr9_+_100745652 BC019658 Y07570 BC013003	-27403	+	TSC_hg19_v1_chr9_+_100745633 AK223454 AK313733 U70439	-27442	+	TSC_hg19_v1_chr9_+_100819020 NM_018946 AK316608 BC000008 AK001659 BC019315 AF257466 CU676426 DQ892167 DQ895361	45960	+	TSC_hg19_v1_chr9_-_100881503 AB529155 DQ893293 DQ896623 AF220130 AF220131 D50919 NM_014788 NM_033219 BC006333 NM_033220 AK292825	108430	-	TSC_hg19_v1_chr9_-_100881526 AK055833	108489	-	Y07569|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC019658|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##Y07570|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##BC013003|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##AK223454|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##AK313733|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##U70439|ANP32B|10541|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B##NM_018946|NANS|54187|N-acetylneuraminic acid synthase##AK316608|NANS|54187|N-acetylneuraminic acid synthase##BC000008|NANS|54187|N-acetylneuraminic acid synthase##AK001659|NANS|54187|N-acetylneuraminic acid synthase##BC019315|NANS|54187|N-acetylneuraminic acid synthase##AF257466|NANS|54187|N-acetylneuraminic acid synthase##DQ892167|NANS|54187|N-acetylneuraminic acid synthase##DQ895361|NANS|54187|N-acetylneuraminic acid synthase##DQ893293|TRIM14|9830|tripartite motif containing 14##DQ896623|TRIM14|9830|tripartite motif containing 14##AF220130|TRIM14|9830|tripartite motif containing 14##AF220131|TRIM14|9830|tripartite motif containing 14##D50919|TRIM14|9830|tripartite motif containing 14##NM_014788|TRIM14|9830|tripartite motif containing 14##NM_033219|TRIM14|9830|tripartite motif containing 14##BC006333|TRIM14|9830|tripartite motif containing 14##NM_033220|TRIM14|9830|tripartite motif containing 14##AK292825|TRIM14|9830|tripartite motif containing 14##AK055833|TRIM14|9830|tripartite motif containing 14	0.980988	0.0	denovo_WM_7:74:0.896
chr9	139979729	139979838	reg1010608.p1	4.804	+	AL832421 TSC_hg19_v1_chr9_+_139972236 AK095393 BC106035	-7543	+	TSC_hg19_v1_chr9_+_139971968 NM_207309	-7830	+	TSC_hg19_v1_chr9_-_139965024 BC048267 NM_178448 DQ150361	-14750	-	BC032375 TSC_hg19_v1_chr9_-_139981113 BC020858	1356	-	AK023312 TSC_hg19_v1_chr9_-_139981293	1501	-	TSC_hg19_v1_chr9_+_139981412 AF148509	1592	+	AL832421|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##AK095393|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC106035|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##NM_207309|UAP1L1|91373|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1##BC048267|C9orf140|89958|chromosome 9 open reading frame 140##NM_178448|C9orf140|89958|chromosome 9 open reading frame 140##DQ150361|C9orf140|89958|chromosome 9 open reading frame 140##BC032375|LOC100289341|100289341|uncharacterized LOC100289341##BC020858|LOC100289341|100289341|uncharacterized LOC100289341##AK023312|LOC100289341|100289341|uncharacterized LOC100289341##AF148509|MAN1B1|11253|mannosidase, alpha, class 1B, member 1	1.865751	0.0	denovo_WM_7:-98:0.413	denovo_WM_7:-100:0.398
chrY	1549134	1549314	reg1001502.p1	4.804	+	AK301844 NM_001173473	-26573	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-27423	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-88255	-	BC043610 GQ280263 NM_178129 AK126147	56814	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	111305	+	NM_004043 U11090	115123	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	1.979374	0.0	denovo_WM_7:-28:0.270	denovo_WM_7:-31:0.427	denovo_WM_7:68:0.314	denovo_WM_7:70:0.600
chr1	235122257	235122383	reg1009142.p1	4.803	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-226546	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-377074	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-378462	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	169769	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	169911	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	202243	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.991659	0.0	denovo_WM_7:-33:0.331	denovo_WM_7:-34:0.331	denovo_WM_7:-35:0.331
chr19	53193383	53193538	reg1012007.p2	4.803	+	TSC_hg19_v1_chr19_-_53141603 BC032867 AK027518 NM_001105549 NM_001105550 NM_001105551 NM_001105552 NM_001105553 NM_001105554 NM_018300	-51836	-	BC067346 NM_001172655	-119544	+	TSC_hg19_v1_chr19_+_53073539 NM_018260 AK001753 BC131719 BC136425 BC136426 BC054884 BC080612	-119918	+	TSC_hg19_v1_chr19_-_53193740 AK289399 AK075066 NM_001242531 NM_001242538	350	-	AK097434 NM_030972	39674	-	BC028590 AK091389 AX746954 NM_001161501 NM_001161499 NM_001161500	44838	-	BC032867|ZNF83|55769|zinc finger protein 83##AK027518|ZNF83|55769|zinc finger protein 83##NM_001105549|ZNF83|55769|zinc finger protein 83##NM_001105550|ZNF83|55769|zinc finger protein 83##NM_001105551|ZNF83|55769|zinc finger protein 83##NM_001105552|ZNF83|55769|zinc finger protein 83##NM_001105553|ZNF83|55769|zinc finger protein 83##NM_001105554|ZNF83|55769|zinc finger protein 83##NM_018300|ZNF83|55769|zinc finger protein 83##BC067346|ZNF701|55762|zinc finger protein 701##NM_001172655|ZNF701|55762|zinc finger protein 701##NM_018260|ZNF701|55762|zinc finger protein 701##AK001753|ZNF701|55762|zinc finger protein 701##BC131719|ZNF701|55762|zinc finger protein 701##BC136425|ZNF701|55762|zinc finger protein 701##BC136426|ZNF701|55762|zinc finger protein 701##BC054884|ZNF701|55762|zinc finger protein 701##BC080612|ZNF701|55762|zinc finger protein 701##AK289399|ZNF83|55769|zinc finger protein 83##AK075066|ZNF83|55769|zinc finger protein 83##NM_001242531|ZNF83|55769|zinc finger protein 83##NM_001242538|ZNF83|55769|zinc finger protein 83##AK097434|ZNF611|81856|zinc finger protein 611##NM_030972|ZNF611|81856|zinc finger protein 611##BC028590|ZNF611|81856|zinc finger protein 611##AK091389|ZNF611|81856|zinc finger protein 611##NM_001161501|ZNF611|81856|zinc finger protein 611##NM_001161499|ZNF611|81856|zinc finger protein 611##NM_001161500|ZNF611|81856|zinc finger protein 611	0.976079	0.0	denovo_WM_7:-15:0.466	denovo_WM_7:-16:0.466
chr21	15467546	15467713	reg1011487.p2	4.803	+	TSC_hg19_v1_chr21_+_15399763 BC070147 BC024173 BC048201	-67865	+	AY172978 NM_174981 AY465173	-485130	+	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	-4368730	-	AB463838 AY197607 NM_198996	111619	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	120868	+	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	287844	-	AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B##BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13	1.771052	0.0	denovo_WM_7:-2:0.450	denovo_WM_7:15:0.840
chr3	98255596	98255662	reg1006399.p2	4.803	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-4820	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-13763	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-13864	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	56790	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	195616	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	195958	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.0	0.0	
chr16	69320999	69321150	reg1012281.p1	4.802	+	TSC_hg19_v1_chr16_+_69221066 BC031058 AF243385 NM_006750 U40572 BC048215 EU831451 EU831538	-100046	+	TSC_hg19_v1_chr16_+_69166551 AK027634 AK027675 AK310104 AB075868 BC009348	-154521	+	TSC_hg19_v1_chr16_+_69166532 BX647265 AK074795	-154547	+	TSC_hg19_v1_chr16_+_69345258 AK315026 AF132747 AF159063 AF255952 NM_013245 BC047932 AF112215 CU690536 EU831747	24258	+	TSC_hg19_v1_chr16_-_69364492 AF322879 BC019912 AF239156 NM_022341	43418	-	TSC_hg19_v1_chr16_-_69373468 BC063831	52363	-	BC031058|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AF243385|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##NM_006750|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##U40572|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##BC048215|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831451|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831538|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AK027634|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK027675|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK310104|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AB075868|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BC009348|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BX647265|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK074795|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK315026|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF132747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF159063|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF255952|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##NM_013245|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##BC047932|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF112215|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##EU831747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF322879|PDF|64146|peptide deformylase (mitochondrial)##BC019912|PDF|64146|peptide deformylase (mitochondrial)##AF239156|PDF|64146|peptide deformylase (mitochondrial)##NM_022341|PDF|64146|peptide deformylase (mitochondrial)##BC063831|COG8|84342|component of oligomeric golgi complex 8	0.996829	0.889961	CTCF.p2:-34:0.890	denovo_WM_7:52:0.316	denovo_WM_7:55:0.464
chr17	76777180	76777250	reg1004979.p1	4.802	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-44217	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-57464	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-57568	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	1138	-	BC071582 TSC_hg19_v1_chr17_-_76836610	59435	-	TSC_hg19_v1_chr17_-_76836843 AK225426	59568	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	1.833062	0.0	denovo_WM_7:45:0.408	denovo_WM_7:46:0.408	denovo_WM_7:-80:0.689
chr18	46862151	46862258	reg1010928.p1	4.802	+	AF010193 NM_001190821 NM_005904	-385124	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-385437	-	AK301535 NM_001190822	-386502	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	124847	-	TSC_hg19_v1_chr18_-_47013575 AB097012	151361	-	TSC_hg19_v1_chr18_-_47013599 BC093004	151395	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.997091	0.577864	denovo_WM_7:-12:0.218	denovo_WM_7:-14:0.683	CTCF.p2:33:0.578
chr2	114655029	114655174	reg1009880.p2	4.801	+	TSC_hg19_v1_chr2_+_114647862 AB527566 CU692216	-7251	+	TSC_hg19_v1_chr2_+_114647707 AK312659	-7393	+	AK300224 TSC_hg19_v1_chr2_+_114647699	-7400	+	AB209353 TSC_hg19_v1_chr2_+_114674521	19412	+	BC030832 NM_020868	544797	+	AK055256 BC038514 NM_001178036	564065	+	AK312659|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK300224|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AB209353|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##BC030832|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_020868|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)	1.514593	0.0	denovo_WM_7:-2:0.335	denovo_WM_7:12:0.460
chr3	127470877	127470962	reg1008195.p2	4.801	+	TSC_hg19_v1_chr3_+_127391798 NM_032548 NM_172027 BC011858 AK098738 AK130594 AB053324 AB053325 AB053326 AK315148 AF297986 CU680084	-79102	+	TSC_hg19_v1_chr3_+_127348020 BC019330 AY359096 NM_015720 BC052585 AF219137	-122887	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	-153635	+	CR456835 TSC_hg19_v1_chr3_-_127541359 AK304844 BC000551 U67963 AK315529 BC006230 NM_007283	70511	-	TSC_hg19_v1_chr3_-_127542029 AK091314 AK310874 NM_001003794	71223	-	AK307108 BX537865 TSC_hg19_v1_chr3_+_127634319	163399	+	NM_032548|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##NM_172027|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC011858|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK098738|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK130594|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053324|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053325|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053326|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK315148|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AF297986|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC019330|PODXL2|50512|podocalyxin-like 2##AY359096|PODXL2|50512|podocalyxin-like 2##NM_015720|PODXL2|50512|podocalyxin-like 2##BC052585|PODXL2|50512|podocalyxin-like 2##AF219137|PODXL2|50512|podocalyxin-like 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2##CR456835|MGLL|11343|monoglyceride lipase##AK304844|MGLL|11343|monoglyceride lipase##BC000551|MGLL|11343|monoglyceride lipase##U67963|MGLL|11343|monoglyceride lipase##AK315529|MGLL|11343|monoglyceride lipase##BC006230|MGLL|11343|monoglyceride lipase##NM_007283|MGLL|11343|monoglyceride lipase##AK091314|MGLL|11343|monoglyceride lipase##AK310874|MGLL|11343|monoglyceride lipase##NM_001003794|MGLL|11343|monoglyceride lipase##AK307108|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12##BX537865|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	0.882454	0.0	denovo_WM_7:33:0.882
chr9	132796573	132796714	reg1012485.p2	4.801	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-198878	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-198921	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-198959	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	8711	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	8845	-	BC039728 NM_001136557 NM_001136558 NM_020960	19341	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.98259	0.0	denovo_WM_7:-41:0.328	denovo_WM_7:-42:0.328	denovo_WM_7:-43:0.328
chr1	178884244	178884378	reg1008408.p1	4.800	+	AK223467 BC050640 AB056476 TSC_hg19_v1_chr1_-_178840178 AY358278 NM_004673	-44165	-	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	-189938	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	-402045	+	TSC_hg19_v1_chr1_+_178995028 AB007944	110709	+	TSC_hg19_v1_chr1_+_178995055 AB480690 BC051794 NM_014864	110753	+	AK289989 BC046441 TSC_hg19_v1_chr1_+_178995259	110907	+	AK223467|ANGPTL1|9068|angiopoietin-like 1##BC050640|ANGPTL1|9068|angiopoietin-like 1##AB056476|ANGPTL1|9068|angiopoietin-like 1##AY358278|ANGPTL1|9068|angiopoietin-like 1##NM_004673|ANGPTL1|9068|angiopoietin-like 1##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##AB007944|FAM20B|9917|family with sequence similarity 20, member B##AB480690|FAM20B|9917|family with sequence similarity 20, member B##BC051794|FAM20B|9917|family with sequence similarity 20, member B##NM_014864|FAM20B|9917|family with sequence similarity 20, member B##AK289989|FAM20B|9917|family with sequence similarity 20, member B##BC046441|FAM20B|9917|family with sequence similarity 20, member B	0.951946	0.0	denovo_WM_7:66:0.445	denovo_WM_7:67:0.220
chr1	221886644	221886796	reg1010971.p2	4.800	+	TSC_hg19_v1_chr1_+_221053066 AB463713 DQ893305 DQ896761	-833621	+	TSC_hg19_v1_chr1_+_221052845 AK127923 AK313298 BC033808	-833806	+	TSC_hg19_v1_chr1_+_221052739 AK056326 NM_021958 BC007294 AB208812 M60721	-833959	+	NM_144728	24081	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	28688	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	28710	-	DQ893305|HLX|3142|H2.0-like homeobox##DQ896761|HLX|3142|H2.0-like homeobox##AK127923|HLX|3142|H2.0-like homeobox##AK313298|HLX|3142|H2.0-like homeobox##BC033808|HLX|3142|H2.0-like homeobox##AK056326|HLX|3142|H2.0-like homeobox##NM_021958|HLX|3142|H2.0-like homeobox##BC007294|HLX|3142|H2.0-like homeobox##AB208812|HLX|3142|H2.0-like homeobox##M60721|HLX|3142|H2.0-like homeobox##NM_144728|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10	0.0	0.0	
chr15	34625309	34625474	reg1001220.p2	4.800	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-14413	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-108151	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-123090	-	AF105366 AF531258 NM_001042497 NM_133647	3653	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	4572	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	4866	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	1.980604	0.0	denovo_WM_7:33:0.745	denovo_WM_7:49:0.843
chr18	53924503	53924683	reg1008062.p1	4.800	+	AB527692 BC031056 NM_001243226	-621435	-	AK315074 AK299169 NM_001243227 NM_001243228	-667555	-	FR748206 FR748216 TSC_hg19_v1_chr18_-_53255849 AK122765 NM_001083962 NM_001243230 NM_003199	-668796	-	AB209263 DQ891846 DQ895034 EU176640 TSC_hg19_v1_chr18_-_54305824 AF051896 AF052659 AK313653	381154	-	TSC_hg19_v1_chr18_-_54305956 BC001156 AF003938 NM_004786	381321	-	TSC_hg19_v1_chr18_+_54318593 AK057141 NM_015285 NM_052834 AB011113 BC150282	394013	+	BC031056|TCF4|6925|transcription factor 4##NM_001243226|TCF4|6925|transcription factor 4##AK315074|TCF4|6925|transcription factor 4##AK299169|TCF4|6925|transcription factor 4##NM_001243227|TCF4|6925|transcription factor 4##NM_001243228|TCF4|6925|transcription factor 4##FR748216|TCF4|6925|transcription factor 4##AK122765|TCF4|6925|transcription factor 4##NM_001083962|TCF4|6925|transcription factor 4##NM_001243230|TCF4|6925|transcription factor 4##NM_003199|TCF4|6925|transcription factor 4##AB209263|TXNL1|9352|thioredoxin-like 1##DQ891846|TXNL1|9352|thioredoxin-like 1##DQ895034|TXNL1|9352|thioredoxin-like 1##EU176640|TXNL1|9352|thioredoxin-like 1##AF051896|TXNL1|9352|thioredoxin-like 1##AF052659|TXNL1|9352|thioredoxin-like 1##AK313653|TXNL1|9352|thioredoxin-like 1##BC001156|TXNL1|9352|thioredoxin-like 1##AF003938|TXNL1|9352|thioredoxin-like 1##NM_004786|TXNL1|9352|thioredoxin-like 1##AK057141|WDR7|23335|WD repeat domain 7##NM_015285|WDR7|23335|WD repeat domain 7##NM_052834|WDR7|23335|WD repeat domain 7##AB011113|WDR7|23335|WD repeat domain 7##BC150282|WDR7|23335|WD repeat domain 7	0.011238	0.0	
chr4	113200318	113200467	reg1000993.p1	4.800	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-47308	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-133778	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1637114	-	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	6609	-	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	18135	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	236940	-	NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2	0.0	0.0	
chr10	64449658	64449804	reg1011993.p2	4.799	+	AJ505150 NM_199452	-169525	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-315688	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-421192	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	114811	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	114926	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	126366	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.996715	0.0	denovo_WM_7:16:0.527	denovo_WM_7:17:0.470
chr10	96001533	96001660	reg1010891.p1	4.799	+	AK297779 AK289852 NM_001165979 AF170071	-152765	+	TSC_hg19_v1_chr10_+_95753696 AB040949 BC151854 NM_016341	-247882	+	TSC_hg19_v1_chr10_+_95653753 AK091309 AX746907 NM_001134658 NM_153226 BC036382 BC058549 BC143283 BC143284 BC104814 BC047102	-347856	+	AB077992 TSC_hg19_v1_chr10_-_96122697 BC049850 NM_022451 AK091246 AX746873 BC030999 AK292520	121080	-	NM_015188 TSC_hg19_v1_chr10_+_96162185	160590	+	TSC_hg19_v1_chr10_+_96162276 AB011180 AB449898	160725	+	AK297779|PLCE1|51196|phospholipase C, epsilon 1##AK289852|PLCE1|51196|phospholipase C, epsilon 1##NM_001165979|PLCE1|51196|phospholipase C, epsilon 1##AF170071|PLCE1|51196|phospholipase C, epsilon 1##AB040949|PLCE1|51196|phospholipase C, epsilon 1##BC151854|PLCE1|51196|phospholipase C, epsilon 1##NM_016341|PLCE1|51196|phospholipase C, epsilon 1##AK091309|SLC35G1|159371|solute carrier family 35, member G1##NM_001134658|SLC35G1|159371|solute carrier family 35, member G1##NM_153226|SLC35G1|159371|solute carrier family 35, member G1##BC036382|SLC35G1|159371|solute carrier family 35, member G1##BC143284|SLC35G1|159371|solute carrier family 35, member G1##BC104814|SLC35G1|159371|solute carrier family 35, member G1##BC047102|SLC35G1|159371|solute carrier family 35, member G1##AB077992|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##BC049850|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##NM_022451|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK091246|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##BC030999|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##AK292520|NOC3L|64318|nucleolar complex associated 3 homolog (S. cerevisiae)##NM_015188|TBC1D12|23232|TBC1 domain family, member 12##AB011180|TBC1D12|23232|TBC1 domain family, member 12##AB449898|TBC1D12|23232|TBC1 domain family, member 12	0.995471	0.0	denovo_WM_7:-38:0.234	denovo_WM_7:-39:0.234	denovo_WM_7:-40:0.234	denovo_WM_7:-41:0.234
chr20	6957483	6957565	reg1010560.p1	4.799	+	BC069214 NM_001200	-208780	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-853361	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-853647	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	963578	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1042776	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1042883	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	1.967527	0.0	denovo_WM_7:-50:0.219	denovo_WM_7:-52:0.702	denovo_WM_7:55:0.426	denovo_WM_7:57:0.486
chr2	231465612	231465792	reg1012070.p2	4.799	+	AK091898 NM_001206704	-184232	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-184746	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-184783	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	111844	+	TSC_hg19_v1_chr2_+_231577633 BC020570	111942	+	AK292382 NM_001130849 NM_001130850 AK315692	112576	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.998289	0.0	
chr5	180688857	180689037	reg1002315.p1	4.799	+	TSC_hg19_v1_chr5_+_180688213 BC016291	-720	+	AK054802 TSC_hg19_v1_chr5_-_180688115 BC007372 NM_032765 AB209243	-822	-	BC014256 TSC_hg19_v1_chr5_-_180670905 BC010119 BC019093 BC032006 BC035460 BC019362 BC014788 BC000366 M24194 BC021993 AK095666 AK301468 D28398 AK310916 AK222488 NM_006098 AK303316 BC000214	-18044	-	BC137547 BC137568 NM_001005221 NM_001005224 NM_001005277	105330	+	None	None	None	None	None	None	AK054802|TRIM52|84851|tripartite motif containing 52##BC007372|TRIM52|84851|tripartite motif containing 52##NM_032765|TRIM52|84851|tripartite motif containing 52##AB209243|TRIM52|84851|tripartite motif containing 52##BC014256|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC010119|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019093|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC032006|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC035460|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019362|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC014788|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000366|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##M24194|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC021993|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK095666|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK301468|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##D28398|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK310916|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK222488|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##NM_006098|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK303316|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000214|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16	0.0	0.018829	
chr6	36649284	36649397	reg1008987.p1	4.799	+	TSC_hg19_v1_chr6_+_36646490 BC013967 AB209881 BC001935 BC000312 L25610 L26165 U03106 S67388 BC000275 L47232 L47233 AY008263	-2815	+	NM_000389 TSC_hg19_v1_chr6_+_36646486 AK309512 NM_001220778 U09579	-2869	+	NM_001220777 NM_078467	-5089	+	AK125083 TSC_hg19_v1_chr6_+_36665627	16288	+	TSC_hg19_v1_chr6_-_36807217 NM_020939	157878	-	TSC_hg19_v1_chr6_-_36807775 AB046819	158452	-	BC013967|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AB209881|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC001935|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000312|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L25610|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L26165|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U03106|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##S67388|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000275|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47232|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47233|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_000389|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AK309512|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_001220778|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U09579|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_001220777|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_078467|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AK125083|RAB44|401258|RAB44, member RAS oncogene family##NM_020939|CPNE5|57699|copine V##AB046819|CPNE5|57699|copine V	0.997733	0.0	
chr16	15108045	15108209	reg1011728.p1	4.798	+	AY203955 TSC_hg19_v1_chr16_+_15069016 DQ111782	-39095	+	AK299111 BC060871 TSC_hg19_v1_chr16_+_15068985	-39142	+	BX648066 TSC_hg19_v1_chr16_+_15068982	-39144	+	CU675948 AF092440 BC017336 NM_173474 AK300557 TSC_hg19_v1_chr16_-_15149897	41750	-	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	80001	-	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	381474	+	AY203955|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ111782|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##AK299111|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##BC060871|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##BX648066|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##AF092440|NTAN1|123803|N-terminal asparagine amidase##BC017336|NTAN1|123803|N-terminal asparagine amidase##NM_173474|NTAN1|123803|N-terminal asparagine amidase##AK300557|NTAN1|123803|N-terminal asparagine amidase##AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like	0.998134	0.0	denovo_WM_7:-54:0.447	denovo_WM_7:-55:0.452
chr22	21942718	21942806	reg1007176.p2	4.798	+	TSC_hg19_v1_chr22_+_21922030 AB528270 CU013202 CU013490 X92962	-20719	+	TSC_hg19_v1_chr22_+_21922021 AK311761 AK291083 AK293179	-20740	+	TSC_hg19_v1_chr22_+_21922018 AJ000519 AK125396 S81003	-20746	+	TSC_hg19_v1_chr22_-_21984304 BC064568 BC053663 BC017281 BC110075 BC110799 BC057814 NM_001017964 BC096754	41553	-	TSC_hg19_v1_chr22_-_21984367 BC133043 BC133047	41638	-	TSC_hg19_v1_chr22_+_21987057 AK302030 AK093365 AX748079 BC033499 NM_152612	44264	+	CU013202|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##CU013490|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##X92962|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK311761|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK291083|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK293179|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AJ000519|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##AK125396|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##S81003|UBE2L3|7332|ubiquitin-conjugating enzyme E2L 3##BC064568|YDJC|150223|YdjC homolog (bacterial)##BC053663|YDJC|150223|YdjC homolog (bacterial)##BC017281|YDJC|150223|YdjC homolog (bacterial)##BC110075|YDJC|150223|YdjC homolog (bacterial)##BC110799|YDJC|150223|YdjC homolog (bacterial)##BC057814|YDJC|150223|YdjC homolog (bacterial)##NM_001017964|YDJC|150223|YdjC homolog (bacterial)##BC096754|YDJC|150223|YdjC homolog (bacterial)##BC133043|YDJC|150223|YdjC homolog (bacterial)##BC133047|YDJC|150223|YdjC homolog (bacterial)##AK302030|CCDC116|164592|coiled-coil domain containing 116##AK093365|CCDC116|164592|coiled-coil domain containing 116##BC033499|CCDC116|164592|coiled-coil domain containing 116##NM_152612|CCDC116|164592|coiled-coil domain containing 116	1.106465	0.0	
chr2	238612727	238612826	reg1009906.p2	4.798	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-11701	+	TSC_hg19_v1_chr2_+_238600975 AJ223075 BC001385 AK298270 U69609 BC108913 BC108914 AK307485	-11833	+	TSC_hg19_v1_chr2_+_238600798 BC018883 BC019335 NM_001137551 NM_001137552 NM_001137553 NM_004735	-11969	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	94644	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	155476	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	262848	+	EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AJ223075|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC001385|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK298270|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##U69609|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108913|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108914|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK307485|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC018883|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC019335|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137551|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137552|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137553|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_004735|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.990242	0.038244	denovo_WM_7:26:0.233	denovo_WM_7:27:0.233	denovo_WM_7:28:0.233	denovo_WM_7:29:0.233
chr12	111872820	111873000	reg1007477.p1	4.797	+	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	-29161	+	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	-66000	-	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	-66064	-	AK126309 TSC_hg19_v1_chr12_-_111893987	21013	-	TSC_hg19_v1_chr12_-_112036257 AK095017	163365	-	TSC_hg19_v1_chr12_-_112036908 AK307803	164003	-	AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3##BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##AK095017|ATXN2|6311|ataxin 2##AK307803|ATXN2|6311|ataxin 2	0.125741	0.0	
chr12	96849554	96849698	reg1005685.p1	4.797	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-55309	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	-55643	-	TSC_hg19_v1_chr12_+_96588254 BC017371	-261359	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	451405	+	BC027605 NM_001135175	451617	+	TSC_hg19_v1_chr12_-_98897622 AK126817	2048001	-	AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK126817|LOC643770|643770|uncharacterized LOC643770	0.999567	0.0	denovo_WM_7:10:0.235	denovo_WM_7:11:0.235	denovo_WM_7:12:0.235	denovo_WM_7:13:0.235
chr13	20701549	20701729	reg1009196.p2	4.797	+	TSC_hg19_v1_chr13_+_20532911 AJ224901 BX647944 NM_001190965	-168674	+	TSC_hg19_v1_chr13_+_20532881 AK226118 AK289741	-168755	+	TSC_hg19_v1_chr13_+_20532834 BC036372 NM_003453 NM_197968 AL136621 NM_001190964 Y13472	-168822	+	NM_021954	33543	-	BC017048 BC071703 TSC_hg19_v1_chr13_-_20767078 AK225966	65419	-	TSC_hg19_v1_chr13_-_20767115 AK313595 NM_004004	65472	-	AJ224901|ZMYM2|7750|zinc finger, MYM-type 2##BX647944|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190965|ZMYM2|7750|zinc finger, MYM-type 2##AK226118|ZMYM2|7750|zinc finger, MYM-type 2##AK289741|ZMYM2|7750|zinc finger, MYM-type 2##BC036372|ZMYM2|7750|zinc finger, MYM-type 2##NM_003453|ZMYM2|7750|zinc finger, MYM-type 2##NM_197968|ZMYM2|7750|zinc finger, MYM-type 2##AL136621|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190964|ZMYM2|7750|zinc finger, MYM-type 2##Y13472|ZMYM2|7750|zinc finger, MYM-type 2##NM_021954|GJA3|2700|gap junction protein, alpha 3, 46kDa##BC017048|GJB2|2706|gap junction protein, beta 2, 26kDa##BC071703|GJB2|2706|gap junction protein, beta 2, 26kDa##AK225966|GJB2|2706|gap junction protein, beta 2, 26kDa##AK313595|GJB2|2706|gap junction protein, beta 2, 26kDa##NM_004004|GJB2|2706|gap junction protein, beta 2, 26kDa	0.0	0.0	
chr14	55658604	55658765	reg1006739.p2	4.797	+	TSC_hg19_v1_chr14_-_55658298 BX248255 D13633 AK291847 AK299338 BC010658 AK297480 AB076695 NM_001146015 NM_014750	-384	-	TSC_hg19_v1_chr14_-_55650349 BT007344	-8278	-	TSC_hg19_v1_chr14_+_55595969 AB006780 BC053667 BC068068 M36682 BC001120 M35368 M57710	-62699	+	NM_017943 AK092879 AX747787 TSC_hg19_v1_chr14_+_55738097 BC109120 BC109121	79375	+	TSC_hg19_v1_chr14_+_55738114 BX248268 BC095482	79474	+	NM_152231	80187	+	BX248255|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##D13633|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK291847|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK299338|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BC010658|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK297480|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB076695|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_001146015|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_014750|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BT007344|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB006780|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC053667|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC068068|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M36682|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC001120|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M35368|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M57710|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_017943|FBXO34|55030|F-box protein 34##AK092879|FBXO34|55030|F-box protein 34##BC109120|FBXO34|55030|F-box protein 34##BC109121|FBXO34|55030|F-box protein 34##BX248268|FBXO34|55030|F-box protein 34##BC095482|FBXO34|55030|F-box protein 34##NM_152231|FBXO34|55030|F-box protein 34	1.931311	0.0	denovo_WM_7:-47:0.863	denovo_WM_7:-62:0.850
chr3	97025699	97025778	reg1011869.p2	4.797	+	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	-492308	+	AK122674 NM_001195643	-3243672	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-3243894	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	132733	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	457862	+	TSC_hg19_v1_chr3_+_97540854 AK296966	515132	+	NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6##AK296966|CRYBG3|131544|beta-gamma crystallin domain containing 3	0.99699	0.0	denovo_WM_7:1:0.880
chr10	5915554	5915732	reg1006163.p1	4.796	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-60208	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-60377	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-142971	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	16213	-	TSC_hg19_v1_chr10_+_5932205 AK095343	16556	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	16568	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.0	0.981987	CTCF.p2:-42:0.982
chr1	169877747	169877851	reg1000702.p1	4.796	+	TSC_hg19_v1_chr1_-_169863059 NM_020423 NM_181093	-14737	-	AL117233 TSC_hg19_v1_chr1_-_169863038 BC014662 AK292507	-14786	-	AL354614 NM_018186	-113250	+	AK122897 NM_001204517	160256	-	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	165944	-	BC157860 BC171858 NM_001136107	237388	+	NM_020423|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##NM_181093|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL117233|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##BC014662|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AK292507|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL354614|C1orf112|55732|chromosome 1 open reading frame 112##NM_018186|C1orf112|55732|chromosome 1 open reading frame 112##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B	0.0	0.0	
chr15	94815611	94815791	reg1003539.p1	4.796	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-40843	+	AB463222 AM392685 BC146682 AK074980 BC140838 BC151132 AL136826 TSC_hg19_v1_chr15_-_93632430 AK074910 AK291365 NM_020211	-1183348	-	NM_001166287	-1183950	-	NM_001159643 NM_018349 AY656717 BC131527	25760	+	NM_001159644 BC025708 BC111024 AK002037	83608	+	TSC_hg19_v1_chr15_-_95870310 BC040875	1054618	-	AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##AM392685|RGMA|56963|RGM domain family, member A##BC146682|RGMA|56963|RGM domain family, member A##AK074980|RGMA|56963|RGM domain family, member A##BC140838|RGMA|56963|RGM domain family, member A##BC151132|RGMA|56963|RGM domain family, member A##AL136826|RGMA|56963|RGM domain family, member A##AK074910|RGMA|56963|RGM domain family, member A##NM_020211|RGMA|56963|RGM domain family, member A##NM_001166287|RGMA|56963|RGM domain family, member A##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456	0.125203	0.0	
chr16	10874530	10874710	reg1008548.p1	4.796	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-36916	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-85855	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-200130	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	37928	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	96492	+	BC071683 TSC_hg19_v1_chr16_-_11036171	161546	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.0	0.0	
chr17	68300021	68300087	reg1011020.p1	4.796	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-134358	+	BC033038 NM_170742	-199060	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-228624	+	TSC_hg19_v1_chr17_-_70116937 AL833139	1816884	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	1817105	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	1817116	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.993174	0.0	denovo_WM_7:39:0.835
chr6	73346099	73346214	reg1008150.p2	4.796	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	-14095	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	-14267	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	-14586	+	BC004267 NM_001126063	589018	-	TSC_hg19_v1_chr6_-_73972815 BC022080 NM_030568 AK054891	626710	-	TSC_hg19_v1_chr6_+_73972992 BC031876 AK094485	626817	+	AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC004267|KHDC1L|100129128|KH homology domain containing 1-like##NM_001126063|KHDC1L|100129128|KH homology domain containing 1-like##BC022080|KHDC1|80759|KH homology domain containing 1##NM_030568|KHDC1|80759|KH homology domain containing 1	0.0	0.0	
chr10	48031606	48031766	reg1012819.p2	4.795	+	NM_018232	-137664	+	NM_001630 BC008813 BC073755 AK096715 AK313626 X16662 BC029890 AK300191 AK223149 AK307182 CU679125 CU687256	-284671	+	BC171820 BC171845 BC171847 NM_001190810	-818061	-	BC171820 BC171845 BC171847 NM_001190810	184037	+	BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556 BC146955 BC146968	215978	+	AK298761 NM_001040084 BC073755 AK096715 Z36830 AK296976 BC004376 NM_001098845 X16662 BC029890 AK300158 AK223149 AK296573 AK300139 M81844 AB590156 CU687256 DQ893430 DQ896775	223639	+	NM_018232|FAM21B|55747|family with sequence similarity 21, member B##NM_001630|ANXA8L2|244|annexin A8-like 2##BC008813|ANXA8L2|244|annexin A8-like 2##BC073755|ANXA8|653145|annexin A8##AK313626|ANXA8L2|244|annexin A8-like 2##X16662|ANXA8L2|244|annexin A8-like 2##AK300191|ANXA8L2|244|annexin A8-like 2##AK223149|ANXA8L2|244|annexin A8-like 2##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171845|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC171847|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##NM_001190810|AGAP9|642517|ArfGAP with GTPase domain, ankyrin repeat and PH domain 9##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##AK298761|ANXA8|653145|annexin A8##NM_001040084|ANXA8|653145|annexin A8##BC073755|ANXA8|653145|annexin A8##Z36830|ANXA8|653145|annexin A8##BC004376|ANXA8|653145|annexin A8##NM_001098845|ANXA8L1|728113|annexin A8-like 1##X16662|ANXA8L2|244|annexin A8-like 2##AK300158|ANXA8|653145|annexin A8##AK223149|ANXA8L2|244|annexin A8-like 2##AK296573|ANXA8|653145|annexin A8##AK300139|ANXA8|653145|annexin A8##M81844|ANXA8|653145|annexin A8##DQ893430|ANXA8L2|244|annexin A8-like 2##DQ896775|ANXA8|653145|annexin A8	0.994669	0.0	denovo_WM_7:24:0.308	denovo_WM_7:25:0.308	denovo_WM_7:26:0.310
chr12	51611769	51611901	reg1012476.p1	4.795	+	AK095191 TSC_hg19_v1_chr12_-_51611589	-302	-	AL832881 NM_002702	-19886	-	TSC_hg19_v1_chr12_-_51566921 U03494 NM_001173452 NM_001173453 NM_005653	-44929	-	NM_001136264 NM_001136266 NM_001136267 NM_001136268 NM_001136269 NM_014764 TSC_hg19_v1_chr12_+_51632559	20711	+	TSC_hg19_v1_chr12_+_51632609 AK303828 AK290119 AK293330 AY430097 BX647278	20764	+	TSC_hg19_v1_chr12_+_51632650 D31767 BC002334 BC007900 AK095963	20800	+	AK095191|POU6F1|5463|POU class 6 homeobox 1##AL832881|POU6F1|5463|POU class 6 homeobox 1##NM_002702|POU6F1|5463|POU class 6 homeobox 1##U03494|TFCP2|7024|transcription factor CP2##NM_001173452|TFCP2|7024|transcription factor CP2##NM_001173453|TFCP2|7024|transcription factor CP2##NM_005653|TFCP2|7024|transcription factor CP2##NM_001136264|DAZAP2|9802|DAZ associated protein 2##NM_001136266|DAZAP2|9802|DAZ associated protein 2##NM_001136267|DAZAP2|9802|DAZ associated protein 2##NM_001136268|DAZAP2|9802|DAZ associated protein 2##NM_001136269|DAZAP2|9802|DAZ associated protein 2##NM_014764|DAZAP2|9802|DAZ associated protein 2##AK303828|DAZAP2|9802|DAZ associated protein 2##AK290119|DAZAP2|9802|DAZ associated protein 2##AK293330|DAZAP2|9802|DAZ associated protein 2##AY430097|DAZAP2|9802|DAZ associated protein 2##BX647278|DAZAP2|9802|DAZ associated protein 2##D31767|DAZAP2|9802|DAZ associated protein 2##BC002334|DAZAP2|9802|DAZ associated protein 2##BC007900|DAZAP2|9802|DAZ associated protein 2##AK095963|DAZAP2|9802|DAZ associated protein 2	0.0	0.0	
chr3	9453986	9454166	reg1012764.p1	4.795	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-14502	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	-14715	+	AK093640 TSC_hg19_v1_chr3_-_9439124 AL110136	-14929	-	TSC_hg19_v1_chr3_+_9476522 AB384632	22440	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	141387	-	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	237066	+	AK092046|SETD5|55209|SET domain containing 5##NM_001080517|SETD5|55209|SET domain containing 5##AK093640|LOC440944|440944|uncharacterized LOC440944##AL110136|LOC440944|440944|uncharacterized LOC440944##BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14	1.988957	0.0	denovo_WM_7:3:0.858	denovo_WM_7:18:0.744	denovo_WM_7:19:0.245
chr7	102082280	102082460	reg1000632.p2	4.795	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-8329	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-8393	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-45528	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	22863	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	22947	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	23038	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	0.0	0.0	
chr8	22832934	22833114	reg1010674.p1	4.795	+	AB590982 AY730275 AY037148 BC020779 AY359109 NM_144962	-47700	-	AK292464 AK313604 X63741 NM_004430 S40832 TSC_hg19_v1_chr8_-_22550853	-282240	-	AB529193 HQ258229 TSC_hg19_v1_chr8_-_22550508 BC112279 BC104765	-282519	-	AK092617 BC034917 NM_001160036	11899	+	NM_001160037	20336	+	TSC_hg19_v1_chr8_+_22857067 AB018260 NM_015178	24053	+	AY730275|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY037148|PEBP4|157310|phosphatidylethanolamine-binding protein 4##BC020779|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AY359109|PEBP4|157310|phosphatidylethanolamine-binding protein 4##NM_144962|PEBP4|157310|phosphatidylethanolamine-binding protein 4##AK292464|EGR3|1960|early growth response 3##AK313604|EGR3|1960|early growth response 3##X63741|EGR3|1960|early growth response 3##NM_004430|EGR3|1960|early growth response 3##S40832|EGR3|1960|early growth response 3##HQ258229|EGR3|1960|early growth response 3##BC112279|EGR3|1960|early growth response 3##BC104765|EGR3|1960|early growth response 3##BC034917|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160036|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_001160037|RHOBTB2|23221|Rho-related BTB domain containing 2##AB018260|RHOBTB2|23221|Rho-related BTB domain containing 2##NM_015178|RHOBTB2|23221|Rho-related BTB domain containing 2	0.0	0.0	
chr1	53015448	53015589	reg1010046.p1	4.794	+	TSC_hg19_v1_chr1_+_52870286 BC000777 BC105004 BC105006	-145188	+	TSC_hg19_v1_chr1_+_52870238 BC063655	-145278	+	TSC_hg19_v1_chr1_+_52870235 NM_032864 AK092038 AK315621 AX747327	-145294	+	TSC_hg19_v1_chr1_-_53018692 BC131734 BC048301	3149	-	TSC_hg19_v1_chr1_-_53018765 BC012047 BC018753 BC035820 AK303532 NM_001009881 NM_015269 AK307579 AK095733	3235	-	NM_015696 TSC_hg19_v1_chr1_+_53068073 AF320068 AK027683 AY358402 BC032788 DQ890863 DQ894018 CU689540	52546	+	BC000777|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##BC105004|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##BC105006|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##BC063655|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##NM_032864|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##AK092038|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##AK315621|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##BC131734|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC048301|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC012047|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC018753|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC035820|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_001009881|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_015269|ZCCHC11|23318|zinc finger, CCHC domain containing 11##AK307579|ZCCHC11|23318|zinc finger, CCHC domain containing 11##AK095733|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_015696|GPX7|2882|glutathione peroxidase 7##AF320068|GPX7|2882|glutathione peroxidase 7##AK027683|GPX7|2882|glutathione peroxidase 7##AY358402|GPX7|2882|glutathione peroxidase 7##BC032788|GPX7|2882|glutathione peroxidase 7##DQ890863|GPX6|257202|glutathione peroxidase 6 (olfactory)##DQ894018|GPX7|2882|glutathione peroxidase 7	0.0	0.0	
chr15	44101117	44101297	reg1001300.p1	4.794	+	TSC_hg19_v1_chr15_+_44092806 AK022435 AF161485 AF049613	-8405	+	NM_001199885 NM_016400 BC019262	-8588	+	BC113988 DQ103711 NM_001033517 BX647438	-8993	-	AB463886 CU690792 DQ893389 DQ896709 TSC_hg19_v1_chr15_-_44116882 U04209 BC023557 BC050742 AK312867 NM_005926	15651	-	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	17980	+	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	386143	-	AK022435|C15orf63|25764|chromosome 15 open reading frame 63##AF161485|C15orf63|25764|chromosome 15 open reading frame 63##AF049613|C15orf63|25764|chromosome 15 open reading frame 63##NM_001199885|C15orf63|25764|chromosome 15 open reading frame 63##NM_016400|C15orf63|25764|chromosome 15 open reading frame 63##BC019262|C15orf63|25764|chromosome 15 open reading frame 63##DQ103711|SERINC4|619189|serine incorporator 4##NM_001033517|SERINC4|619189|serine incorporator 4##BX647438|SERINC4|619189|serine incorporator 4##DQ893389|MFAP1|4236|microfibrillar-associated protein 1##DQ896709|MFAP1|4236|microfibrillar-associated protein 1##U04209|MFAP1|4236|microfibrillar-associated protein 1##BC023557|MFAP1|4236|microfibrillar-associated protein 1##BC050742|MFAP1|4236|microfibrillar-associated protein 1##AK312867|MFAP1|4236|microfibrillar-associated protein 1##NM_005926|MFAP1|4236|microfibrillar-associated protein 1##NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5	0.0	0.0	
chr16	29596621	29596760	reg1008070.p1	4.794	+	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-125464	+	BC022832 NM_001031827 NM_001039182	-130406	-	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	-130839	+	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	9655	-	TSC_hg19_v1_chr16_-_29606667 AK316536	9983	-	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	28352	-	AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene	0.987288	0.0	denovo_WM_7:13:0.547
chr17	76151419	76151599	reg1010127.p1	4.794	+	AY358510 NM_001163075	-9076	+	BC023597 NM_007267 TSC_hg19_v1_chr17_-_76128499	-23009	-	TSC_hg19_v1_chr17_+_76126871 AK310623 NM_152468 AK303499 BC110296 AY099358 AY099359 BC028076 AK090478	-24643	+	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	13151	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	31670	-	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	31914	+	AY358510|C17orf99|100141515|chromosome 17 open reading frame 99##NM_001163075|C17orf99|100141515|chromosome 17 open reading frame 99##BC023597|TMC6|11322|transmembrane channel-like 6##NM_007267|TMC6|11322|transmembrane channel-like 6##AK310623|TMC8|147138|transmembrane channel-like 8##NM_152468|TMC8|147138|transmembrane channel-like 8##AK303499|TMC8|147138|transmembrane channel-like 8##BC110296|TMC8|147138|transmembrane channel-like 8##AY099358|TMC8|147138|transmembrane channel-like 8##AY099359|TMC8|147138|transmembrane channel-like 8##BC028076|TMC8|147138|transmembrane channel-like 8##AK090478|TMC8|147138|transmembrane channel-like 8##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase	0.918268	0.0	denovo_WM_7:43:0.223	denovo_WM_7:44:0.345	denovo_WM_7:45:0.296
chr20	62477471	62477570	reg1007204.p1	4.794	+	TSC_hg19_v1_chr20_-_62462618 BC052269 BC073800	-14923	-	AK131482 NM_025224	-40665	-	TSC_hg19_v1_chr20_+_62372460 AK298304 BC017446	-105000	+	NM_080622	15045	+	NM_001243891 NM_001243892 NM_001243894 NM_001243895 NM_003288 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 TSC_hg19_v1_chr20_+_62496622 AK298366 AK055068 AK297064 AK314501	19083	+	TSC_hg19_v1_chr20_+_62496638 AF004430	19120	+	BC052269|ZBTB46|140685|zinc finger and BTB domain containing 46##BC073800|ZBTB46|140685|zinc finger and BTB domain containing 46##AK131482|ZBTB46|140685|zinc finger and BTB domain containing 46##NM_025224|ZBTB46|140685|zinc finger and BTB domain containing 46##AK298304|SLC2A4RG|56731|SLC2A4 regulator##BC017446|SLC2A4RG|56731|SLC2A4 regulator##NM_080622|ABHD16B|140701|abhydrolase domain containing 16B##NM_001243891|TPD52L2|7165|tumor protein D52-like 2##NM_001243892|TPD52L2|7165|tumor protein D52-like 2##NM_001243894|TPD52L2|7165|tumor protein D52-like 2##NM_001243895|TPD52L2|7165|tumor protein D52-like 2##NM_003288|TPD52L2|7165|tumor protein D52-like 2##NM_199359|TPD52L2|7165|tumor protein D52-like 2##NM_199360|TPD52L2|7165|tumor protein D52-like 2##NM_199361|TPD52L2|7165|tumor protein D52-like 2##NM_199362|TPD52L2|7165|tumor protein D52-like 2##NM_199363|TPD52L2|7165|tumor protein D52-like 2##AK298366|TPD52L2|7165|tumor protein D52-like 2##AK055068|TPD52L2|7165|tumor protein D52-like 2##AK297064|TPD52L2|7165|tumor protein D52-like 2##AK314501|TPD52L2|7165|tumor protein D52-like 2##AF004430|TPD52L2|7165|tumor protein D52-like 2	0.999494	0.03633	
chr9	139490668	139490792	reg1009173.p1	4.794	+	AF308602 M73980 NM_017617 TSC_hg19_v1_chr9_-_139440260	-50480	-	TSC_hg19_v1_chr9_-_139378220 AB593115	-112488	-	BC036221 NM_152571 AK055336	-112760	+	NM_016215 AL512735 AY358903 BC088371 AY358902	66671	+	TSC_hg19_v1_chr9_+_139560219 NM_201446	69485	+	BC012377 TSC_hg19_v1_chr9_+_139560248	69541	+	AF308602|NOTCH1|4851|notch 1##M73980|NOTCH1|4851|notch 1##NM_017617|NOTCH1|4851|notch 1##AB593115|SEC16A|9919|SEC16 homolog A (S. cerevisiae)##BC036221|C9orf163|158055|chromosome 9 open reading frame 163##NM_152571|C9orf163|158055|chromosome 9 open reading frame 163##AK055336|C9orf163|158055|chromosome 9 open reading frame 163##NM_016215|EGFL7|51162|EGF-like-domain, multiple 7##AL512735|EGFL7|51162|EGF-like-domain, multiple 7##AY358903|EGFL7|51162|EGF-like-domain, multiple 7##BC088371|EGFL7|51162|EGF-like-domain, multiple 7##AY358902|EGFL7|51162|EGF-like-domain, multiple 7##NM_201446|EGFL7|51162|EGF-like-domain, multiple 7##BC012377|EGFL7|51162|EGF-like-domain, multiple 7	1.027667	0.0	
chr12	12869628	12869808	reg1002257.p1	4.793	+	AK096388 NM_006143	-20598	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-104835	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-104923	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	408	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	9138	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	68859	+	AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1	0.0	0.0	
chr13	39430137	39430271	reg1011505.p1	4.793	+	NM_207361	-169032	+	TSC_hg19_v1_chr13_+_38923995 AK095490 AK307111 BC005193 Z70222 AF208844 AK309914 AB154404 CR457189	-506155	+	NM_016617 TSC_hg19_v1_chr13_+_38923946	-506253	+	DQ891676 EU176604 AK313632 BC025760 AK304159 NM_001144033 NM_145286	134722	-	TSC_hg19_v1_chr13_-_39612201 AK074360 AB107354	181997	-	TSC_hg19_v1_chr13_-_39612251 NM_025138 NM_170719	182049	-	NM_207361|FREM2|341640|FRAS1 related extracellular matrix protein 2##AK095490|UFM1|51569|ubiquitin-fold modifier 1##AK307111|UFM1|51569|ubiquitin-fold modifier 1##BC005193|UFM1|51569|ubiquitin-fold modifier 1##Z70222|UFM1|51569|ubiquitin-fold modifier 1##AF208844|UFM1|51569|ubiquitin-fold modifier 1##AK309914|UFM1|51569|ubiquitin-fold modifier 1##AB154404|UFM1|51569|ubiquitin-fold modifier 1##CR457189|UFM1|51569|ubiquitin-fold modifier 1##NM_016617|UFM1|51569|ubiquitin-fold modifier 1##DQ891676|STOML3|161003|stomatin (EPB72)-like 3##EU176604|STOML3|161003|stomatin (EPB72)-like 3##AK313632|STOML3|161003|stomatin (EPB72)-like 3##BC025760|STOML3|161003|stomatin (EPB72)-like 3##AK304159|STOML3|161003|stomatin (EPB72)-like 3##NM_001144033|STOML3|161003|stomatin (EPB72)-like 3##NM_145286|STOML3|161003|stomatin (EPB72)-like 3##AK074360|PROSER1|80209|proline and serine rich 1##AB107354|PROSER1|80209|proline and serine rich 1##NM_025138|PROSER1|80209|proline and serine rich 1##NM_170719|PROSER1|80209|proline and serine rich 1	1.623088	0.0	denovo_WM_7:0:0.625	denovo_WM_7:-14:0.632
chr14	24835713	24835893	reg1012260.p1	4.793	+	AF156884 AY453693 AY494982 AY494983 CU692020 TSC_hg19_v1_chr14_-_24809197 BC062584 AK296309 BC041668 AK296140 AK075275 NM_006871	-26664	-	BX248285 BC027943 AK122714 AK126468 NM_001198568 NM_001198592 NM_139247 TSC_hg19_v1_chr14_-_24804278	-31538	-	NM_181657	-53491	+	AK310445 EU887632 EU887633 EU887634 NM_001136022 NM_001198967	341	+	NM_001198965 NM_004554 BC037735 AK293185 TSC_hg19_v1_chr14_+_24837389 AK311078 AK311425 L41066 BC053855 AB527875 EU446638 EU887641 EU887642 EU887643	1582	+	AK302271 NM_001198966 AK310433 EU887644 EU887645 EU887646 EU887647 EU887648 EU887649 AK300450	2572	+	AF156884|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY453693|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494982|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AY494983|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC062584|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296309|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BC041668|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK296140|RIPK3|11035|receptor-interacting serine-threonine kinase 3##AK075275|RIPK3|11035|receptor-interacting serine-threonine kinase 3##NM_006871|RIPK3|11035|receptor-interacting serine-threonine kinase 3##BX248285|ADCY4|196883|adenylate cyclase 4##BC027943|ADCY4|196883|adenylate cyclase 4##AK122714|ADCY4|196883|adenylate cyclase 4##AK126468|ADCY4|196883|adenylate cyclase 4##NM_001198568|ADCY4|196883|adenylate cyclase 4##NM_001198592|ADCY4|196883|adenylate cyclase 4##NM_139247|ADCY4|196883|adenylate cyclase 4##NM_181657|LTB4R|1241|leukotriene B4 receptor##AK310445|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887632|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887633|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887634|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001136022|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198967|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198965|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_004554|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC037735|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK293185|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311078|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311425|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##L41066|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC053855|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU446638|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887641|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887642|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887643|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK302271|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198966|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK310433|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887644|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887645|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887646|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887647|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887648|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887649|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK300450|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	1.965317	0.0	denovo_WM_7:-21:0.522	denovo_WM_7:-22:0.200	denovo_WM_7:-37:0.554
chr17	73660273	73660453	reg1004928.p2	4.793	+	BC062771 NM_001162997 AK131023	-17682	+	BC027861 NM_001162995	-30850	+	TSC_hg19_v1_chr17_+_73598147 BC033247	-62152	+	BC063440 EF560729 TSC_hg19_v1_chr17_-_73663235 BC016911 AK075084 AK304168 AB042823 AB042824 AB042825 NM_001003715 NM_001003716 NM_004259	2885	-	NM_013260 TSC_hg19_v1_chr17_+_73663441 AK095265 AK298060 BC030233 AY082382 BC007592 AF119664 BC063793 AK002202 AK310177 BC011724 AB464187 AF087869 CU675719 EU446793 BC013409 AK023157	3070	+	NM_000213 NM_001005731 X53587 TSC_hg19_v1_chr17_+_73717539	57168	+	BC062771|C17orf110|100130933|chromosome 17 open reading frame 110##NM_001162997|C17orf110|100130933|chromosome 17 open reading frame 110##AK131023|C17orf110|100130933|chromosome 17 open reading frame 110##BC027861|C17orf109|643008|chromosome 17 open reading frame 109##NM_001162995|C17orf109|643008|chromosome 17 open reading frame 109##BC033247|MYO15B|80022|myosin XVB pseudogene##BC063440|RECQL5|9400|RecQ protein-like 5##EF560729|RECQL5|9400|RecQ protein-like 5##BC016911|RECQL5|9400|RecQ protein-like 5##AK075084|RECQL5|9400|RecQ protein-like 5##AK304168|RECQL5|9400|RecQ protein-like 5##AB042823|RECQL5|9400|RecQ protein-like 5##AB042824|RECQL5|9400|RecQ protein-like 5##AB042825|RECQL5|9400|RecQ protein-like 5##NM_001003715|RECQL5|9400|RecQ protein-like 5##NM_001003716|RECQL5|9400|RecQ protein-like 5##NM_004259|RECQL5|9400|RecQ protein-like 5##NM_013260|SAP30BP|29115|SAP30 binding protein##AK095265|SAP30BP|29115|SAP30 binding protein##AK298060|SAP30BP|29115|SAP30 binding protein##BC030233|SAP30BP|29115|SAP30 binding protein##AY082382|SAP30BP|29115|SAP30 binding protein##BC007592|SAP30BP|29115|SAP30 binding protein##AF119664|SAP30BP|29115|SAP30 binding protein##BC063793|SAP30BP|29115|SAP30 binding protein##AK002202|SAP30BP|29115|SAP30 binding protein##AK310177|SAP30BP|29115|SAP30 binding protein##BC011724|SAP30BP|29115|SAP30 binding protein##AF087869|SAP30BP|29115|SAP30 binding protein##EU446793|SAP30BP|29115|SAP30 binding protein##BC013409|SAP30BP|29115|SAP30 binding protein##AK023157|SAP30BP|29115|SAP30 binding protein##NM_000213|ITGB4|3691|integrin, beta 4##NM_001005731|ITGB4|3691|integrin, beta 4##X53587|ITGB4|3691|integrin, beta 4	0.029735	0.0	
chr5	71772708	71772809	reg1010819.p1	4.793	+	TSC_hg19_v1_chr5_+_71616221 BC018720 AK303639	-156536	+	AK303776 TSC_hg19_v1_chr5_+_71616202 AK056761 NM_024754 AK298750	-156556	+	TSC_hg19_v1_chr5_-_71616075 AK300111 NM_015084	-156678	-	BC121053 BC121054 BX647592 BC029955 AK097115 NM_152625	30425	-	NM_002270 TSC_hg19_v1_chr5_+_72112487 AK299671 U70322 AK301021 AK308177 BC040340 AB528475	339732	+	NM_153188 TSC_hg19_v1_chr5_+_72143947	371183	+	BC018720|PTCD2|79810|pentatricopeptide repeat domain 2##AK303639|PTCD2|79810|pentatricopeptide repeat domain 2##AK303776|PTCD2|79810|pentatricopeptide repeat domain 2##AK056761|PTCD2|79810|pentatricopeptide repeat domain 2##NM_024754|PTCD2|79810|pentatricopeptide repeat domain 2##AK298750|PTCD2|79810|pentatricopeptide repeat domain 2##AK300111|MRPS27|23107|mitochondrial ribosomal protein S27##NM_015084|MRPS27|23107|mitochondrial ribosomal protein S27##BC121053|ZNF366|167465|zinc finger protein 366##BC121054|ZNF366|167465|zinc finger protein 366##BX647592|ZNF366|167465|zinc finger protein 366##BC029955|ZNF366|167465|zinc finger protein 366##AK097115|ZNF366|167465|zinc finger protein 366##NM_152625|ZNF366|167465|zinc finger protein 366##NM_002270|TNPO1|3842|transportin 1##AK299671|TNPO1|3842|transportin 1##U70322|TNPO1|3842|transportin 1##AK301021|TNPO1|3842|transportin 1##AK308177|TNPO1|3842|transportin 1##BC040340|TNPO1|3842|transportin 1##NM_153188|TNPO1|3842|transportin 1	0.194577	0.0	
chr6	14089756	14089828	reg1003522.p2	4.793	+	NM_001165033 AK090576 AX746519	-164349	+	NM_001165032 NM_152737 TSC_hg19_v1_chr6_+_13925202 AK315528 BC030666 BC050030	-164626	+	NM_001165034	-165116	+	NM_001251901	27694	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	28113	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	28230	+	NM_001165033|RNF182|221687|ring finger protein 182##AK090576|RNF182|221687|ring finger protein 182##NM_001165032|RNF182|221687|ring finger protein 182##NM_152737|RNF182|221687|ring finger protein 182##AK315528|RNF182|221687|ring finger protein 182##BC030666|RNF182|221687|ring finger protein 182##BC050030|RNF182|221687|ring finger protein 182##NM_001165034|RNF182|221687|ring finger protein 182##NM_001251901|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule	0.993792	0.0	
chr7	101673939	101674094	reg1010835.p1	4.793	+	M74099 NM_181552	-213135	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-214807	+	BC002778 NM_138403	-401441	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	254381	+	TSC_hg19_v1_chr7_+_101928431 AB000520	254427	+	NM_001146210	322872	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.953939	0.0	denovo_WM_7:-40:0.832
chr11	64859976	64860075	reg1008235.p1	4.792	+	NM_001242631 AK124141	-3466	-	TSC_hg19_v1_chr11_+_64851731 BC012530 BC012814 AF043611	-8245	+	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	-8319	+	TSC_hg19_v1_chr11_+_64863684 AF024631 NM_013265	3620	+	TSC_hg19_v1_chr11_+_64863710 BC010540	3680	+	BC010872 TSC_hg19_v1_chr11_+_64863712 BC007198 BC017438	3689	+	NM_001242631|LOC100130348|100130348|uncharacterized LOC100130348##AK124141|LOC399904|399904|uncharacterized LOC399904##BC012530|ZFPL1|7542|zinc finger protein-like 1##BC012814|ZFPL1|7542|zinc finger protein-like 1##AF043611|ZFPL1|7542|zinc finger protein-like 1##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1##AF024631|C11orf2|738|chromosome 11 open reading frame 2##NM_013265|C11orf2|738|chromosome 11 open reading frame 2##BC010540|C11orf2|738|chromosome 11 open reading frame 2##BC010872|C11orf2|738|chromosome 11 open reading frame 2##BC007198|C11orf2|738|chromosome 11 open reading frame 2##BC017438|C11orf2|738|chromosome 11 open reading frame 2	0.995795	0.0	
chr17	33390771	33390948	reg1001383.p2	4.792	+	TSC_hg19_v1_chr17_-_33390690 CR933651 NM_001017368	-142	-	TSC_hg19_v1_chr17_+_33307530 NM_002311 NM_013975 BC068005 AK300363 AK308407 U40671 X84740 BC009026	-83271	+	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	-102270	+	TSC_hg19_v1_chr17_-_33416298 AK093112 AX747930 BC028424	25452	-	AB464124 DQ892318 DQ895520 BC002723 AB013341 AB016223 AB016224 AB016225 Y15572 AF034956 BC014422 TSC_hg19_v1_chr17_-_33446836 AK296241 BX647297 AK301249	55886	-	TSC_hg19_v1_chr17_-_33446880 NM_001142571 NM_002878 NM_133629	56016	-	CR933651|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_001017368|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_002311|LIG3|3980|ligase III, DNA, ATP-dependent##NM_013975|LIG3|3980|ligase III, DNA, ATP-dependent##BC068005|LIG3|3980|ligase III, DNA, ATP-dependent##AK300363|LIG3|3980|ligase III, DNA, ATP-dependent##AK308407|LIG3|3980|ligase III, DNA, ATP-dependent##U40671|LIG3|3980|ligase III, DNA, ATP-dependent##X84740|LIG3|3980|ligase III, DNA, ATP-dependent##BC009026|LIG3|3980|ligase III, DNA, ATP-dependent##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830##AK093112|RFFL|117584|ring finger and FYVE-like domain containing 1##BC028424|RFFL|117584|ring finger and FYVE-like domain containing 1##DQ892318|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##DQ895520|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC002723|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB013341|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016223|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016224|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016225|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##Y15572|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AF034956|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC014422|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK296241|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BX647297|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK301249|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_001142571|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_002878|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_133629|RAD51D|5892|RAD51 homolog D (S. cerevisiae)	0.0	0.0	
chr9	36258421	36258581	reg1002647.p2	4.792	+	TSC_hg19_v1_chr9_-_36258446 BC121179 AK295562 NM_001190383 NM_001190384 NM_005476	-62	-	TSC_hg19_v1_chr9_+_36191041 AB463527 CU676418 BT007170 DQ270158	-67461	+	TSC_hg19_v1_chr9_+_36190960 AK225153 BC019287 M20472 M20471	-67529	+	AM697709 AM697708 AK296687 AK312539 NM_001128227 NM_001190388	18490	-	TSC_hg19_v1_chr9_-_36375965 AK024996 DQ895235 EU176239	117499	-	AL136817 BC033786 NM_022781 NM_194329	141752	-	BC121179|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK295562|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190383|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190384|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_005476|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##BT007170|CLTA|1211|clathrin, light chain A##DQ270158|CLTA|1211|clathrin, light chain A##AK225153|CLTA|1211|clathrin, light chain A##BC019287|CLTA|1211|clathrin, light chain A##M20472|CLTA|1211|clathrin, light chain A##M20471|CLTA|1211|clathrin, light chain A##AM697709|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AM697708|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK296687|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK312539|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001128227|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##NM_001190388|GNE|10020|glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase##AK024996|RNF38|152006|ring finger protein 38##DQ895235|RNF38|152006|ring finger protein 38##EU176239|RNF38|152006|ring finger protein 38##AL136817|RNF38|152006|ring finger protein 38##BC033786|RNF38|152006|ring finger protein 38##NM_022781|RNF38|152006|ring finger protein 38##NM_194329|RNF38|152006|ring finger protein 38	0.0	0.0	
chr1	234908283	234908463	reg1002387.p3	4.791	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-12599	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-163127	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-164515	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	383716	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	383858	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	416190	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr12	51336599	51336686	reg1008428.p1	4.791	+	TSC_hg19_v1_chr12_+_51318801 AY358797 AK024409 AK307071 AK225689 AK225595 AK023693 AK293356 AJ536233 BC008180 BC004492 AB590800 EU832657 EU832734 AL050159 AF113007	-17841	+	TSC_hg19_v1_chr12_+_51318519 NM_014033	-18118	+	NM_182559 BC035123 BC048112 CU690554	-99919	+	NM_001109619	11139	+	TSC_hg19_v1_chr12_-_51402997 AK316507	66364	-	TSC_hg19_v1_chr12_-_51403037 AK296445 NM_001174130	66400	-	AY358797|METTL7A|25840|methyltransferase like 7A##AK024409|METTL7A|25840|methyltransferase like 7A##AK307071|METTL7A|25840|methyltransferase like 7A##AK225689|METTL7A|25840|methyltransferase like 7A##AK225595|METTL7A|25840|methyltransferase like 7A##AK023693|METTL7A|25840|methyltransferase like 7A##AK293356|METTL7A|25840|methyltransferase like 7A##AJ536233|METTL7A|25840|methyltransferase like 7A##BC008180|METTL7A|25840|methyltransferase like 7A##BC004492|METTL7A|25840|methyltransferase like 7A##EU832657|METTL7A|25840|methyltransferase like 7A##EU832734|METTL7A|25840|methyltransferase like 7A##AL050159|METTL7A|25840|methyltransferase like 7A##AF113007|METTL7A|25840|methyltransferase like 7A##NM_014033|METTL7A|25840|methyltransferase like 7A##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##NM_001109619|HIGD1C|613227|HIG1 hypoxia inducible domain family, member 1C##AK316507|SLC11A2|4891|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2##AK296445|SLC11A2|4891|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2##NM_001174130|SLC11A2|4891|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	0.997206	0.0	denovo_WM_7:16:0.816
chr15	63772014	63772194	reg1009618.p2	4.791	+	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	-98029	-	BT006656 DQ893188 DQ896511 EU831616 EU831623 EU831703 EU831708 AF051882 BC000278 AF037335 BC011691 TSC_hg19_v1_chr15_-_63674046 AK096845 BC023981	-98112	-	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	-202291	+	TSC_hg19_v1_chr15_+_63796791 AK314223	24678	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	24773	+	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	117475	+	AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##BT006656|CA12|771|carbonic anhydrase XII##DQ893188|CA12|771|carbonic anhydrase XII##DQ896511|CA12|771|carbonic anhydrase XII##EU831616|CA12|771|carbonic anhydrase XII##EU831623|CA12|771|carbonic anhydrase XII##EU831703|CA12|771|carbonic anhydrase XII##EU831708|CA12|771|carbonic anhydrase XII##AF051882|CA12|771|carbonic anhydrase XII##BC000278|CA12|771|carbonic anhydrase XII##AF037335|CA12|771|carbonic anhydrase XII##BC011691|CA12|771|carbonic anhydrase XII##AK096845|CA12|771|carbonic anhydrase XII##BC023981|CA12|771|carbonic anhydrase XII##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK314223|USP3|9960|ubiquitin specific peptidase 3##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22	0.0	0.022652	
chr19	10330305	10330485	reg1007178.p1	4.791	+	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-24668	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-24790	-	AB209413 TSC_hg19_v1_chr19_-_10305579	-24838	-	NM_004230 TSC_hg19_v1_chr19_-_10342058	11611	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	32252	+	TSC_hg19_v1_chr19_+_10362889 BC009858	32503	+	BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AB209413|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4	0.993912	0.03405	denovo_WM_7:-79:0.981
chr9	91450185	91450363	reg1011310.p1	4.791	+	BC101432 BC101439 BC101440 BC101442 AK098532 NM_001100111	-183235	-	NM_001161625 NM_145283 BC022521	-300257	+	TSC_hg19_v1_chr9_+_91003988 AK315854	-446276	+	AK094842 NM_001001938 NM_001142413 AK127854 BC144432 BC136895 AY333281	155569	+	TSC_hg19_v1_chr9_+_91606382 AK312798 BC060827 NM_005226	156096	+	DQ896663 TSC_hg19_v1_chr9_-_91793449 D84361	343190	-	BC101432|LOC286238|286238|uncharacterized LOC286238##BC101439|LOC286238|286238|uncharacterized LOC286238##BC101440|LOC286238|286238|uncharacterized LOC286238##BC101442|LOC286238|286238|uncharacterized LOC286238##AK098532|LOC286238|286238|uncharacterized LOC286238##NM_001100111|LOC286238|286238|uncharacterized LOC286238##NM_001161625|NXNL2|158046|nucleoredoxin-like 2##NM_145283|NXNL2|158046|nucleoredoxin-like 2##BC022521|NXNL2|158046|nucleoredoxin-like 2##AK315854|SPIN1|10927|spindlin 1##AK094842|C9orf47|286223|chromosome 9 open reading frame 47##NM_001001938|C9orf47|286223|chromosome 9 open reading frame 47##NM_001142413|C9orf47|286223|chromosome 9 open reading frame 47##AK127854|C9orf47|286223|chromosome 9 open reading frame 47##BC144432|C9orf47|286223|chromosome 9 open reading frame 47##BC136895|C9orf47|286223|chromosome 9 open reading frame 47##AY333281|C9orf47|286223|chromosome 9 open reading frame 47##AK312798|S1PR3|1903|sphingosine-1-phosphate receptor 3##BC060827|S1PR3|1903|sphingosine-1-phosphate receptor 3##NM_005226|S1PR3|1903|sphingosine-1-phosphate receptor 3##DQ896663|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##D84361|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3	0.479146	0.0	denovo_WM_7:-34:0.440
chr12	124884309	124884432	reg1010544.p2	4.790	+	AK126577 NM_181709	-110661	+	TSC_hg19_v1_chr12_+_124457763 AL834266 NM_001204298 NM_001204299 NM_152437 BC051696 BC037793 BX647762 AK056034	-426641	+	TSC_hg19_v1_chr12_-_124457275 AK222661 BC017186 AK026124 NM_025140	-427171	-	TSC_hg19_v1_chr12_-_125002875 BC033087	118489	-	AB209089 NM_001077261 NM_001206654 NM_006312 TSC_hg19_v1_chr12_-_125052138	167705	-	DQ892837 DQ896083 BC093732 BC112037 BC143319 Z22555 TSC_hg19_v1_chr12_-_125348344	463935	-	AK126577|FAM101A|144347|family with sequence similarity 101, member A##NM_181709|FAM101A|144347|family with sequence similarity 101, member A##AL834266|ZNF664|144348|zinc finger protein 664##NM_001204298|ZNF664|144348|zinc finger protein 664##NM_001204299|ZNF664-FAM101A|100533183|protein FAM101A##NM_152437|ZNF664|144348|zinc finger protein 664##BC051696|ZNF664|144348|zinc finger protein 664##BC037793|ZNF664|144348|zinc finger protein 664##BX647762|ZNF664|144348|zinc finger protein 664##AK056034|ZNF664|144348|zinc finger protein 664##AK222661|CCDC92|80212|coiled-coil domain containing 92##BC017186|CCDC92|80212|coiled-coil domain containing 92##AK026124|CCDC92|80212|coiled-coil domain containing 92##NM_025140|CCDC92|80212|coiled-coil domain containing 92##AB209089|NCOR2|9612|nuclear receptor corepressor 2##NM_001077261|NCOR2|9612|nuclear receptor corepressor 2##NM_001206654|NCOR2|9612|nuclear receptor corepressor 2##NM_006312|NCOR2|9612|nuclear receptor corepressor 2##DQ892837|SCARB1|949|scavenger receptor class B, member 1##DQ896083|SCARB1|949|scavenger receptor class B, member 1##BC093732|SCARB1|949|scavenger receptor class B, member 1##BC112037|SCARB1|949|scavenger receptor class B, member 1##BC143319|SCARB1|949|scavenger receptor class B, member 1##Z22555|SCARB1|949|scavenger receptor class B, member 1	0.0	0.0	
chr6_ssto_hap7	4085179	4085327	reg1001224.p2	4.790	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.369095	0.0	denovo_WM_7:-15:0.345
chr10	103575654	103575793	reg1010721.p1	4.789	+	TSC_hg19_v1_chr10_-_103543157 AF081280 AY049737 NM_006993	-32552	-	CU691104 BC041067 TSC_hg19_v1_chr10_-_103543153 BC054868	-32573	-	NM_001206389	-35598	-	AB014579 TSC_hg19_v1_chr10_-_103577919	2142	-	TSC_hg19_v1_chr10_-_103578172 AF036144 AF307332 BC047877	2451	-	BC039583 TSC_hg19_v1_chr10_-_103578180	2456	-	AF081280|NPM3|10360|nucleophosmin/nucleoplasmin 3##AY049737|NPM3|10360|nucleophosmin/nucleoplasmin 3##NM_006993|NPM3|10360|nucleophosmin/nucleoplasmin 3##BC041067|NPM3|10360|nucleophosmin/nucleoplasmin 3##BC054868|NPM3|10360|nucleophosmin/nucleoplasmin 3##NM_001206389|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##AB014579|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##AF036144|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##AF307332|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC047877|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC039583|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)	2.767836	0.0	denovo_WM_7:2:0.593	denovo_WM_7:3:0.338	denovo_WM_7:17:0.517	denovo_WM_7:18:0.433	denovo_WM_7:-88:0.327	denovo_WM_7:-90:0.285
chr11	122754007	122754187	reg1000456.p1	4.789	+	AK097534 BC068507 NM_024806 NM_199124	-666	+	BC070266 AK313578 AF001622 NM_019604	-44868	+	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	-227550	+	AB231738 NM_001098169	98259	-	AB034951 BC016179 BC016660 BC019816 AF352832 TSC_hg19_v1_chr11_-_122932842 AK222628 AK222785 AK096100 AK129885 AK303935	178727	-	TSC_hg19_v1_chr11_-_122932848 NM_006597 NM_153201 AK310467	178782	-	AK097534|C11orf63|79864|chromosome 11 open reading frame 63##BC068507|C11orf63|79864|chromosome 11 open reading frame 63##NM_024806|C11orf63|79864|chromosome 11 open reading frame 63##NM_199124|C11orf63|79864|chromosome 11 open reading frame 63##BC070266|CRTAM|56253|cytotoxic and regulatory T cell molecule##AK313578|CRTAM|56253|cytotoxic and regulatory T cell molecule##AF001622|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_019604|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB231738|BSX|390259|brain-specific homeobox##NM_001098169|BSX|390259|brain-specific homeobox##AB034951|HSPA8|3312|heat shock 70kDa protein 8##BC016179|HSPA8|3312|heat shock 70kDa protein 8##BC016660|HSPA8|3312|heat shock 70kDa protein 8##BC019816|HSPA8|3312|heat shock 70kDa protein 8##AF352832|HSPA8|3312|heat shock 70kDa protein 8##AK222628|HSPA8|3312|heat shock 70kDa protein 8##AK222785|HSPA8|3312|heat shock 70kDa protein 8##AK096100|HSPA8|3312|heat shock 70kDa protein 8##AK129885|HSPA8|3312|heat shock 70kDa protein 8##AK303935|HSPA8|3312|heat shock 70kDa protein 8##NM_006597|HSPA8|3312|heat shock 70kDa protein 8##NM_153201|HSPA8|3312|heat shock 70kDa protein 8##AK310467|HSPA8|3312|heat shock 70kDa protein 8	0.0	0.0	
chr3	195681904	195682007	reg1009118.p2	4.789	+	NM_005781 L13738	-46039	-	AK131539 NM_001010938	-59524	-	BC008884 AK225786 BC020389 TSC_hg19_v1_chr3_-_195619679	-62390	-	TSC_hg19_v1_chr3_-_195717156 BC071730 AK300421 AK316025 AK299148	35176	-	TSC_hg19_v1_chr3_-_195808954 AB209254 X01060 BC001188	126989	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	127006	-	NM_005781|TNK2|10188|tyrosine kinase, non-receptor, 2##L13738|TNK2|10188|tyrosine kinase, non-receptor, 2##AK131539|TNK2|10188|tyrosine kinase, non-receptor, 2##NM_001010938|TNK2|10188|tyrosine kinase, non-receptor, 2##BC008884|TNK2|10188|tyrosine kinase, non-receptor, 2##AK225786|TNK2|10188|tyrosine kinase, non-receptor, 2##BC020389|TNK2|10188|tyrosine kinase, non-receptor, 2##BC071730|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##AK316025|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##AK299148|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##AB209254|TFRC|7037|transferrin receptor (p90, CD71)##X01060|TFRC|7037|transferrin receptor (p90, CD71)##BC001188|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)	1.327573	0.0	denovo_WM_7:-13:0.306
chr5	15702300	15702410	reg1010224.p2	4.789	+	TSC_hg19_v1_chr5_+_15500770 AF199356 AB463041	-201579	+	BC075061 TSC_hg19_v1_chr5_+_15500760	-201607	+	BC136424 TSC_hg19_v1_chr5_+_15500549	-201811	+	NM_001102562	477541	-	TSC_hg19_v1_chr5_-_16465884 BC010545 BC008752 NM_033414 AY046059	763521	-	NM_019000	806751	-	AF199356|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC075061|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC136424|FBXL7|23194|F-box and leucine-rich repeat protein 7##NM_001102562|MARCH11|441061|membrane-associated ring finger (C3HC4) 11##BC010545|ZNF622|90441|zinc finger protein 622##BC008752|ZNF622|90441|zinc finger protein 622##NM_033414|ZNF622|90441|zinc finger protein 622##AY046059|ZNF622|90441|zinc finger protein 622##NM_019000|FAM134B|54463|family with sequence similarity 134, member B	0.993792	0.0	denovo_WM_7:0:0.248	denovo_WM_7:0:0.248	denovo_WM_7:-1:0.248	denovo_WM_7:-2:0.248
chr7	101689761	101689861	reg1008253.p1	4.789	+	M74099 NM_181552	-228930	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-230602	+	BC002778 NM_138403	-417236	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	238586	+	TSC_hg19_v1_chr7_+_101928431 AB000520	238632	+	NM_001146210	307077	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	1.069817	0.0	
chr10	34861640	34861739	reg1009260.p2	4.788	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-1237691	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-1237875	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-1238236	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	242462	-	AK310225 AK300491 NM_001198778 NM_001198779	501523	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	517583	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.988507	0.0	denovo_WM_7:43:0.927
chr15	75867316	75867416	reg1009945.p1	4.788	+	AL832463 NM_001145357	-119243	-	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	-123309	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	-123464	-	CU687108 TSC_hg19_v1_chr15_-_75871151 BT007405 CU679831 DQ890986 BC010863	3753	-	TSC_hg19_v1_chr15_-_75871604 M83738 NM_002833	4200	-	TSC_hg19_v1_chr15_-_75871631 BC071574	4266	-	AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BT007405|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##DQ890986|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##BC010863|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##M83738|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##NM_002833|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9##BC071574|PTPN9|5780|protein tyrosine phosphatase, non-receptor type 9	2.228942	0.0	denovo_WM_7:-57:0.229	denovo_WM_7:-72:0.223	denovo_WM_7:-73:0.223	denovo_WM_7:-74:0.224
chr18	53925504	53925685	reg1010346.p1	4.788	+	AB527692 BC031056 NM_001243226	-622436	-	AK315074 AK299169 NM_001243227 NM_001243228	-668556	-	FR748206 FR748216 TSC_hg19_v1_chr18_-_53255849 AK122765 NM_001083962 NM_001243230 NM_003199	-669797	-	AB209263 DQ891846 DQ895034 EU176640 TSC_hg19_v1_chr18_-_54305824 AF051896 AF052659 AK313653	380153	-	TSC_hg19_v1_chr18_-_54305956 BC001156 AF003938 NM_004786	380320	-	TSC_hg19_v1_chr18_+_54318593 AK057141 NM_015285 NM_052834 AB011113 BC150282	393012	+	BC031056|TCF4|6925|transcription factor 4##NM_001243226|TCF4|6925|transcription factor 4##AK315074|TCF4|6925|transcription factor 4##AK299169|TCF4|6925|transcription factor 4##NM_001243227|TCF4|6925|transcription factor 4##NM_001243228|TCF4|6925|transcription factor 4##FR748216|TCF4|6925|transcription factor 4##AK122765|TCF4|6925|transcription factor 4##NM_001083962|TCF4|6925|transcription factor 4##NM_001243230|TCF4|6925|transcription factor 4##NM_003199|TCF4|6925|transcription factor 4##AB209263|TXNL1|9352|thioredoxin-like 1##DQ891846|TXNL1|9352|thioredoxin-like 1##DQ895034|TXNL1|9352|thioredoxin-like 1##EU176640|TXNL1|9352|thioredoxin-like 1##AF051896|TXNL1|9352|thioredoxin-like 1##AF052659|TXNL1|9352|thioredoxin-like 1##AK313653|TXNL1|9352|thioredoxin-like 1##BC001156|TXNL1|9352|thioredoxin-like 1##AF003938|TXNL1|9352|thioredoxin-like 1##NM_004786|TXNL1|9352|thioredoxin-like 1##AK057141|WDR7|23335|WD repeat domain 7##NM_015285|WDR7|23335|WD repeat domain 7##NM_052834|WDR7|23335|WD repeat domain 7##AB011113|WDR7|23335|WD repeat domain 7##BC150282|WDR7|23335|WD repeat domain 7	0.676347	0.0	denovo_WM_7:12:0.279
chr3	12689167	12689291	reg1005322.p1	4.788	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-90649	+	NM_001195279	-102267	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-162993	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	16238	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	16386	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	16445	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.0	0.0	
chr5	5046924	5047104	reg1012076.p1	4.788	+	AY335938 NM_024337	-1450847	+	AY249325 NM_178569 BC101608 BC101634 BC143638 BC143639 BC143640 BC171731	-2294713	+	AB188492 NM_001134222 NM_033267 BC065189	-2295243	-	AK127746 DQ266047 NM_139056 TSC_hg19_v1_chr5_+_5140442 AB462933 AJ315734	93497	+	TSC_hg19_v1_chr5_+_5422777 AK126937	375761	+	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	375895	+	AY335938|IRX1|79192|iroquois homeobox 1##NM_024337|IRX1|79192|iroquois homeobox 1##AY249325|C5orf38|153571|chromosome 5 open reading frame 38##NM_178569|C5orf38|153571|chromosome 5 open reading frame 38##BC101608|C5orf38|153571|chromosome 5 open reading frame 38##BC101634|C5orf38|153571|chromosome 5 open reading frame 38##BC143638|C5orf38|153571|chromosome 5 open reading frame 38##BC143639|C5orf38|153571|chromosome 5 open reading frame 38##BC143640|C5orf38|153571|chromosome 5 open reading frame 38##BC171731|C5orf38|153571|chromosome 5 open reading frame 38##AB188492|IRX2|153572|iroquois homeobox 2##NM_001134222|IRX2|153572|iroquois homeobox 2##NM_033267|IRX2|153572|iroquois homeobox 2##BC065189|IRX2|153572|iroquois homeobox 2##AK127746|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##DQ266047|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##NM_139056|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AJ315734|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947	0.202258	0.0	
chr7	130904511	130904688	reg1011173.p1	4.788	+	AK294384 NM_001145354	-109745	+	TSC_hg19_v1_chr7_-_130792857 BC047367	-111740	-	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-485672	-	NM_013255 TSC_hg19_v1_chr7_+_131012611	108007	+	TSC_hg19_v1_chr7_+_131012652 BC067825 AF047489 AK310452 AK002024	108040	+	BC042466 TSC_hg19_v1_chr7_-_131241369 U97519 AK223573 AK055816 NM_001018111 NM_005397	336764	-	AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC047367|FLJ43663|378805|uncharacterized LOC378805##AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC067825|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AF047489|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK310452|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK002024|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC042466|PODXL|5420|podocalyxin-like##U97519|PODXL|5420|podocalyxin-like##AK223573|PODXL|5420|podocalyxin-like##AK055816|PODXL|5420|podocalyxin-like##NM_001018111|PODXL|5420|podocalyxin-like##NM_005397|PODXL|5420|podocalyxin-like	0.152281	0.099721	
chr11	10339552	10339732	reg1002828.p1	4.787	+	TSC_hg19_v1_chr11_+_10326623 AK312893 BC015961 D14874 NM_001124	-13013	+	TSC_hg19_v1_chr11_-_10315755 BC101466 AY234241 NM_030962	-23876	-	AK098060 TSC_hg19_v1_chr11_+_9779882	-559780	+	AK295046 NM_001172431	132225	+	NM_000480 BC126118 TSC_hg19_v1_chr11_+_10472246 AK311436 M84720 AK289998 AK294444 AK313039 HQ258646	132753	+	NM_001025389 D12775 AK308181 M84721 AK299113 TSC_hg19_v1_chr11_+_10476953	137177	+	AK312893|ADM|133|adrenomedullin##BC015961|ADM|133|adrenomedullin##D14874|ADM|133|adrenomedullin##NM_001124|ADM|133|adrenomedullin##BC101466|SBF2|81846|SET binding factor 2##AY234241|SBF2|81846|SET binding factor 2##NM_030962|SBF2|81846|SET binding factor 2##AK098060|LOC283104|283104|uncharacterized LOC283104##AK295046|AMPD3|272|adenosine monophosphate deaminase 3##NM_001172431|AMPD3|272|adenosine monophosphate deaminase 3##NM_000480|AMPD3|272|adenosine monophosphate deaminase 3##BC126118|AMPD3|272|adenosine monophosphate deaminase 3##AK311436|AMPD3|272|adenosine monophosphate deaminase 3##M84720|AMPD3|272|adenosine monophosphate deaminase 3##AK289998|AMPD3|272|adenosine monophosphate deaminase 3##AK294444|AMPD3|272|adenosine monophosphate deaminase 3##AK313039|AMPD3|272|adenosine monophosphate deaminase 3##HQ258646|AMPD3|272|adenosine monophosphate deaminase 3##NM_001025389|AMPD3|272|adenosine monophosphate deaminase 3##D12775|AMPD3|272|adenosine monophosphate deaminase 3##AK308181|AMPD3|272|adenosine monophosphate deaminase 3##M84721|AMPD3|272|adenosine monophosphate deaminase 3##AK299113|AMPD3|272|adenosine monophosphate deaminase 3	0.0	0.0	
chr14	77464372	77464510	reg1012982.p1	4.787	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-171646	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-185179	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-185231	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	30243	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	30619	-	AK124327 TSC_hg19_v1_chr14_-_77542533	78092	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	1.990181	0.0	denovo_WM_7:-22:0.916	denovo_WM_7:-37:0.947
chr2	212192978	212193158	reg1012381.p1	4.786	+	AK316425 NM_001122634 AK302778 AY317138	-734983	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	-771679	+	NM_001122633 AB208800	-850650	+	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	1210247	-	AK301503 AF130863 NM_016260	1821987	-	BC028936 NM_001079526	1823264	-	AK316425|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122634|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK302778|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AY317138|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122633|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB208800|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)	1.896522	0.0	denovo_WM_7:32:0.941	denovo_WM_7:47:0.945
chr2	41716163	41716340	reg1011591.p2	4.786	+	Y12878 Y12885 AK291696 BX537482 NM_001112802	-976679	-	Y13032 BX648299 TSC_hg19_v1_chr2_-_40679231	-1037029	-	AF108388 AF108389 M96368 AF128524 NM_001112800 NM_001112801 NM_001252624 NM_021097	-1058820	-	AK124893 NM_001242815	464691	-	TSC_hg19_v1_chr2_+_42275160 NM_138370	558881	+	AB528999 TSC_hg19_v1_chr2_+_42275979	559710	+	Y12878|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y12885|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK291696|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX537482|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112802|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y13032|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX648299|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108388|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108389|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##M96368|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF128524|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112800|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112801|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001252624|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_021097|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)	0.990638	0.0	denovo_WM_7:25:0.627	denovo_WM_7:27:0.201
chr4	103456929	103457102	reg1009326.p1	4.786	+	TSC_hg19_v1_chr4_+_103422822 AK291450	-34192	+	TSC_hg19_v1_chr4_+_103422737 M55643	-34253	+	TSC_hg19_v1_chr4_+_103422554 M58603	-34460	+	EU009130 TSC_hg19_v1_chr4_-_103682110 AK300015 AB209846 AK312827	225071	-	TSC_hg19_v1_chr4_-_103682126 U60337 AK291598 BC015743	225120	-	NM_005908 TSC_hg19_v1_chr4_-_103682152	225149	-	AK291450|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M55643|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M58603|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##EU009130|MANBA|4126|mannosidase, beta A, lysosomal##AK300015|MANBA|4126|mannosidase, beta A, lysosomal##AB209846|MANBA|4126|mannosidase, beta A, lysosomal##AK312827|MANBA|4126|mannosidase, beta A, lysosomal##U60337|MANBA|4126|mannosidase, beta A, lysosomal##AK291598|MANBA|4126|mannosidase, beta A, lysosomal##BC015743|MANBA|4126|mannosidase, beta A, lysosomal##NM_005908|MANBA|4126|mannosidase, beta A, lysosomal	0.999115	0.0	denovo_WM_7:40:0.288	denovo_WM_7:43:0.455
chr4	38321496	38321635	reg1010255.p1	4.786	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-342548	+	AF095288 BC069114 BC069400 NM_006607	-359510	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-428776	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	344261	+	AF289565 TSC_hg19_v1_chr4_-_38666549	344924	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	463034	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.999052	0.022873	denovo_WM_7:-50:0.314	denovo_WM_7:-51:0.314	denovo_WM_7:-52:0.314
chr6	13682013	13682120	reg1009591.p2	4.786	+	TSC_hg19_v1_chr6_+_13615570 AF172066 NM_016167 BC062683 AK075301 BC023517 CU692792	-66466	+	BC064478 TSC_hg19_v1_chr6_-_13615415	-66663	-	TSC_hg19_v1_chr6_+_13574830 NM_001193267 NM_001242827 NM_031244 BX538030 AK302467 AK000355 AK294162 AJ420496 NM_012241 BC000126 AF083110	-107223	+	AB008515 TSC_hg19_v1_chr6_-_13711498	29425	-	TSC_hg19_v1_chr6_-_13711730 AB055311 NM_005493	29669	-	BC052781 TSC_hg19_v1_chr6_-_13711955	29908	-	AF172066|NOL7|51406|nucleolar protein 7, 27kDa##NM_016167|NOL7|51406|nucleolar protein 7, 27kDa##BC062683|NOL7|51406|nucleolar protein 7, 27kDa##AK075301|NOL7|51406|nucleolar protein 7, 27kDa##BC023517|NOL7|51406|nucleolar protein 7, 27kDa##NM_001193267|SIRT5|23408|sirtuin 5##NM_001242827|SIRT5|23408|sirtuin 5##NM_031244|SIRT5|23408|sirtuin 5##BX538030|SIRT5|23408|sirtuin 5##AK302467|SIRT5|23408|sirtuin 5##AK000355|SIRT5|23408|sirtuin 5##AK294162|SIRT5|23408|sirtuin 5##AJ420496|SIRT5|23408|sirtuin 5##NM_012241|SIRT5|23408|sirtuin 5##BC000126|SIRT5|23408|sirtuin 5##AF083110|SIRT5|23408|sirtuin 5##AB008515|RANBP9|10048|RAN binding protein 9##AB055311|RANBP9|10048|RAN binding protein 9##NM_005493|RANBP9|10048|RAN binding protein 9##BC052781|RANBP9|10048|RAN binding protein 9	0.898065	0.303965	CTCF.p2:-16:0.304	denovo_WM_7:37:0.757
chr9	117378926	117379063	reg1010812.p1	4.786	+	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	-5225	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	-28887	+	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	-28956	+	NM_001199233	65374	-	AY434464 NM_001204344	175815	-	AB590753 AK291642 BC074940 BC074941 BC069435 AK313721 BC104462 BC104463 NM_005118 AF520785	189357	-	NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91##CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_001199233|LOC100505478|100505478|uncharacterized LOC100505478##AY434464|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001204344|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AK291642|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC074940|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC074941|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC069435|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AK313721|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC104462|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC104463|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_005118|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AF520785|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15	0.997528	0.0	denovo_WM_7:-39:0.880
chr19	15403682	15403807	reg1010180.p1	4.785	+	AF386649 NM_014299 NM_058243 Y12059	-12483	-	BC115002 NM_001142886	-59932	-	BC132958 BC132960 AK026061 NM_024794	-60532	-	TSC_hg19_v1_chr19_-_15442714 BC030158 AK307664	38958	-	BC000156 TSC_hg19_v1_chr19_-_15443139	39394	-	TSC_hg19_v1_chr19_-_15443306 BC038988	39561	-	AF386649|BRD4|23476|bromodomain containing 4##NM_014299|BRD4|23476|bromodomain containing 4##NM_058243|BRD4|23476|bromodomain containing 4##Y12059|BRD4|23476|bromodomain containing 4##BC115002|EPHX3|79852|epoxide hydrolase 3##NM_001142886|EPHX3|79852|epoxide hydrolase 3##BC132958|EPHX3|79852|epoxide hydrolase 3##BC132960|EPHX3|79852|epoxide hydrolase 3##AK026061|EPHX3|79852|epoxide hydrolase 3##NM_024794|EPHX3|79852|epoxide hydrolase 3##BC030158|BRD4|23476|bromodomain containing 4##AK307664|BRD4|23476|bromodomain containing 4##BC000156|BRD4|23476|bromodomain containing 4##BC038988|BRD4|23476|bromodomain containing 4	0.101012	0.0	denovo_WM_7:-107:0.259
chr6	150305078	150305199	reg1011208.p2	4.785	+	AK292519 AK316582 TSC_hg19_v1_chr6_+_150285142 BC035416 NM_025218 AB052907 AF304377 AF346416 AF425265 AF346595	-19976	+	AK299895 AB052906 NM_025217 TSC_hg19_v1_chr6_+_150263162 AX772820 BC034689 AY358665 AF304378 AY026825 CU689938	-41974	+	AY172580 BC096719 BC098152 AY172579 NM_001001788 AK310157	-60938	-	BC131600 AB528849 AY039682 NM_130900	41495	-	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	85075	-	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	159103	+	AK292519|ULBP1|80329|UL16 binding protein 1##AK316582|ULBP1|80329|UL16 binding protein 1##BC035416|ULBP1|80329|UL16 binding protein 1##NM_025218|ULBP1|80329|UL16 binding protein 1##AB052907|ULBP1|80329|UL16 binding protein 1##AF304377|ULBP1|80329|UL16 binding protein 1##AF346416|ULBP1|80329|UL16 binding protein 1##AF425265|ULBP1|80329|UL16 binding protein 1##AF346595|ULBP1|80329|UL16 binding protein 1##AK299895|ULBP2|80328|UL16 binding protein 2##AB052906|ULBP2|80328|UL16 binding protein 2##NM_025217|ULBP2|80328|UL16 binding protein 2##AX772820|ULBP2|80328|UL16 binding protein 2##BC034689|ULBP2|80328|UL16 binding protein 2##AY358665|ULBP2|80328|UL16 binding protein 2##AF304378|ULBP2|80328|UL16 binding protein 2##AY026825|ULBP2|80328|UL16 binding protein 2##AY172580|RAET1G|353091|retinoic acid early transcript 1G##BC096719|RAET1G|353091|retinoic acid early transcript 1G##BC098152|RAET1G|353091|retinoic acid early transcript 1G##AY172579|RAET1G|353091|retinoic acid early transcript 1G##NM_001001788|RAET1G|353091|retinoic acid early transcript 1G##AK310157|RAET1G|353091|retinoic acid early transcript 1G##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C	4.395585	0.0	denovo_WM_7:-14:0.368	denovo_WM_7:-17:0.553	denovo_WM_7:-54:0.509	denovo_WM_7:-59:0.303	denovo_WM_7:72:0.503	denovo_WM_7:-96:0.206	denovo_WM_7:-100:0.653	denovo_WM_7:105:0.372	denovo_WM_7:106:0.268
chr8	11395349	11395439	reg1005368.p2	4.785	+	S76617 NM_001715 BC018703 BC004473 BC038555	-43801	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-71165	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-190390	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	166326	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	231874	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	264790	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.0	0.0	
chr10	111797292	111797403	reg1010033.p1	4.784	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-29380	+	TSC_hg19_v1_chr10_+_111767741 BX647403 NM_001121 NM_016824 BC062559 BX648016	-29618	+	NM_019903 AB209810 BC057285	-31566	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	170012	+	BC012907 NM_001008541	172641	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	188474	+	AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##BX647403|ADD3|120|adducin 3 (gamma)##NM_001121|ADD3|120|adducin 3 (gamma)##NM_016824|ADD3|120|adducin 3 (gamma)##BC062559|ADD3|120|adducin 3 (gamma)##BX648016|ADD3|120|adducin 3 (gamma)##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1	0.999414	0.0	
chr1	155122140	155122320	reg1001195.p1	4.784	+	AB028128 BC032223 BC104202 BC104203 AF312922 NM_018973 AF312923 NM_153741 BC065233 AK293625 TSC_hg19_v1_chr1_-_155113008 BC104481	-9360	-	BC005943 TSC_hg19_v1_chr1_+_155108343 BC010869 BC069245 CR457148 CU679421	-13865	+	TSC_hg19_v1_chr1_+_155108327 AK289551 NM_001122837 NM_001122839 NM_018845 AF126023 BC009621 AF126024 BC012378	-13921	+	TSC_hg19_v1_chr1_-_155145674 BC048205	23455	-	BX647396 TSC_hg19_v1_chr1_-_155145781 AK311907 AK024167 CU691196 DQ890793 DQ893948 BC029806 NM_173852 BC057233	23540	-	AK296300 TSC_hg19_v1_chr1_+_155146298	24054	+	AB028128|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC032223|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC104202|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC104203|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##AF312922|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##NM_018973|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##AF312923|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##NM_153741|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC065233|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##AK293625|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC104481|DPM3|54344|dolichyl-phosphate mannosyltransferase polypeptide 3##BC005943|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC010869|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC069245|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##CR457148|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##AK289551|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##NM_001122837|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##NM_001122839|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##NM_018845|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##AF126023|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC009621|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##AF126024|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC012378|SLC50A1|55974|solute carrier family 50 (sugar transporter), member 1##BC048205|KRTCAP2|200185|keratinocyte associated protein 2##BX647396|KRTCAP2|200185|keratinocyte associated protein 2##AK311907|KRTCAP2|200185|keratinocyte associated protein 2##AK024167|KRTCAP2|200185|keratinocyte associated protein 2##DQ890793|KRTCAP2|200185|keratinocyte associated protein 2##DQ893948|KRTCAP2|200185|keratinocyte associated protein 2##BC029806|KRTCAP2|200185|keratinocyte associated protein 2##NM_173852|KRTCAP2|200185|keratinocyte associated protein 2##BC057233|KRTCAP2|200185|keratinocyte associated protein 2##AK296300|TRIM46|80128|tripartite motif containing 46	0.045776	0.0	
chr12	31902257	31902389	reg1005509.p1	4.784	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-20267	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-20349	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-89709	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	42881	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	210008	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	210071	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.0	0.0	
chr14	103933994	103934147	reg1010536.p1	4.784	+	TSC_hg19_v1_chr14_+_103851775 AF465413 BC024773 U64205	-82184	+	TSC_hg19_v1_chr14_+_103851772 BX161395	-82300	+	TSC_hg19_v1_chr14_+_103851700 NM_001128918 NM_001128919 NM_001128920 NM_001128921 NM_002376	-82367	+	CR542268 CU676412 M16364 TSC_hg19_v1_chr14_-_103988931	54810	-	M16451 L47647 TSC_hg19_v1_chr14_-_103989168 BC004914 BC019259 BC008323 BC001190 BC019281 BC010002 AK290101 AK312282 AK298198	55073	-	NM_001823 TSC_hg19_v1_chr14_-_103989206	55132	-	AF465413|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BC024773|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##U64205|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BX161395|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##CR542268|CKB|1152|creatine kinase, brain##M16364|CKB|1152|creatine kinase, brain##M16451|CKB|1152|creatine kinase, brain##L47647|CKB|1152|creatine kinase, brain##BC004914|CKB|1152|creatine kinase, brain##BC019259|CKB|1152|creatine kinase, brain##BC008323|CKB|1152|creatine kinase, brain##BC001190|CKB|1152|creatine kinase, brain##BC019281|CKB|1152|creatine kinase, brain##BC010002|CKB|1152|creatine kinase, brain##AK290101|CKB|1152|creatine kinase, brain##AK312282|CKB|1152|creatine kinase, brain##AK298198|CKB|1152|creatine kinase, brain##NM_001823|CKB|1152|creatine kinase, brain	0.995795	0.0	
chr17	74256399	74256543	reg1011581.p2	4.784	+	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	-20023	-	BC046460 NM_001454	-119097	-	TSC_hg19_v1_chr17_-_74099869 BX647763 NM_001013839 NM_001145297 NM_001145298 NM_001145299 NM_015219	-156606	-	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	4813	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	5036	+	EU832276 EU832361 BC131559 AL136774 NM_032134	47199	-	AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##BC046460|FOXJ1|2302|forkhead box J1##NM_001454|FOXJ1|2302|forkhead box J1##BX647763|EXOC7|23265|exocyst complex component 7##NM_001013839|EXOC7|23265|exocyst complex component 7##NM_001145297|EXOC7|23265|exocyst complex component 7##NM_001145298|EXOC7|23265|exocyst complex component 7##NM_001145299|EXOC7|23265|exocyst complex component 7##NM_015219|EXOC7|23265|exocyst complex component 7##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B##EU832276|QRICH2|84074|glutamine rich 2##EU832361|QRICH2|84074|glutamine rich 2##BC131559|QRICH2|84074|glutamine rich 2##AL136774|QRICH2|84074|glutamine rich 2##NM_032134|QRICH2|84074|glutamine rich 2	0.772468	0.0	denovo_WM_7:31:0.710
chr18	20671411	20671525	reg1007705.p1	4.784	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-157653	+	TSC_hg19_v1_chr18_+_20513319 NM_002894 U72066 AK292481	-158120	+	HQ258502 BC132871 AF273058 BC031065 BC070128 NM_172241	-673643	-	EF028204 NM_001100619	44258	+	BC037218 NM_138375	64320	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	346403	-	BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##NM_002894|RBBP8|5932|retinoblastoma binding protein 8##U72066|RBBP8|5932|retinoblastoma binding protein 8##AK292481|RBBP8|5932|retinoblastoma binding protein 8##HQ258502|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC132871|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##AF273058|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC031065|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC070128|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_172241|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241	0.987901	0.0	denovo_WM_7:-16:0.337	denovo_WM_7:-17:0.408
chr19	41840898	41840994	reg1008553.p2	4.784	+	TSC_hg19_v1_chr19_+_41816132 BC011577 NM_052848	-24862	+	BC129981 TSC_hg19_v1_chr19_-_41813133	-27884	-	TSC_hg19_v1_chr19_+_41798338 AL050146	-42674	+	BT007245 CU692504 TSC_hg19_v1_chr19_-_41858962 EU832132 EU832225	18043	-	TSC_hg19_v1_chr19_-_41859306 BC022242 AK291907	18343	-	TSC_hg19_v1_chr19_-_41859420 BC000125 BC001180	18452	-	BC011577|CCDC97|90324|coiled-coil domain containing 97##NM_052848|CCDC97|90324|coiled-coil domain containing 97##AL050146|HNRNPUL1|11100|heterogeneous nuclear ribonucleoprotein U-like 1##BT007245|TGFB1|7040|transforming growth factor, beta 1##EU832132|TGFB1|7040|transforming growth factor, beta 1##EU832225|TGFB1|7040|transforming growth factor, beta 1##BC022242|TGFB1|7040|transforming growth factor, beta 1##AK291907|TGFB1|7040|transforming growth factor, beta 1##BC000125|TGFB1|7040|transforming growth factor, beta 1##BC001180|TGFB1|7040|transforming growth factor, beta 1	0.98895	0.0	denovo_WM_7:21:0.976
chr10	6443856	6443973	reg1009416.p2	4.783	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-199038	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-257002	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-257030	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	178347	-	TSC_hg19_v1_chr10_+_6622460 AY007155	178566	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1007336	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.281326	CTCF.p2:45:0.281
chr13	29291605	29291778	reg1007679.p2	4.783	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	-58397	+	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	-58483	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	-222447	-	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	1364	-	BC150245 AB018317 NM_001033602 AB384524	307084	+	BC032481 NM_015233 AK293970 BC119654 BC119655 BC129985	711119	+	AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3##BC150245|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AB018317|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_001033602|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC032481|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_015233|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK293970|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119654|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119655|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC129985|MTUS2|23281|microtubule associated tumor suppressor candidate 2	0.999929	0.0	
chr2	71463509	71463620	reg1013591.p1	4.783	+	TSC_hg19_v1_chr2_-_71454205 AB032981 NM_020459	-9334	-	TSC_hg19_v1_chr2_+_71357768 AK310931 BC041084 X98494	-105779	+	TSC_hg19_v1_chr2_+_71357454 AK056862 NM_005791 BC126389	-106075	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	40162	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	95333	+	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	217237	+	AB032981|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_020459|PAIP2B|400961|poly(A) binding protein interacting protein 2B##AK310931|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC041084|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##X98494|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK056862|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##NM_005791|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##BC126389|MPHOSPH10|10199|M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)##AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)	0.015043	0.0	
chr3	129118907	129118973	reg1008227.p2	4.783	+	TSC_hg19_v1_chr3_-_129118263 BC053996 AK093477	-677	-	TSC_hg19_v1_chr3_-_129035130 BC000426 NM_006026	-83840	-	TSC_hg19_v1_chr3_+_128997745 BC010125 BC050686 NM_001006109 BC009993	-121128	+	CU688234 AK127968 BC031104 BC066975 NM_207307	28472	-	AM180876 CR450305 CU680042 BC034463 U56254 U56428 TSC_hg19_v1_chr3_-_129158722 BC011752	39778	-	AK312878 TSC_hg19_v1_chr3_-_129158781 AF114784	39857	-	BC053996|RPL32P3|132241|ribosomal protein L32 pseudogene 3##AK093477|RPL32P3|132241|ribosomal protein L32 pseudogene 3##BC000426|H1FX|8971|H1 histone family, member X##NM_006026|H1FX|8971|H1 histone family, member X##BC010125|C3orf37|56941|chromosome 3 open reading frame 37##BC050686|C3orf37|56941|chromosome 3 open reading frame 37##NM_001006109|C3orf37|56941|chromosome 3 open reading frame 37##BC009993|C3orf37|56941|chromosome 3 open reading frame 37##AK127968|C3orf25|90288|chromosome 3 open reading frame 25##BC031104|C3orf25|90288|chromosome 3 open reading frame 25##BC066975|C3orf25|90288|chromosome 3 open reading frame 25##NM_207307|C3orf25|90288|chromosome 3 open reading frame 25##AM180876|MBD4|8930|methyl-CpG binding domain protein 4##CR450305|MBD4|8930|methyl-CpG binding domain protein 4##BC034463|MBD4|8930|methyl-CpG binding domain protein 4##BC011752|MBD4|8930|methyl-CpG binding domain protein 4##AK312878|MBD4|8930|methyl-CpG binding domain protein 4##AF114784|MBD4|8930|methyl-CpG binding domain protein 4	1.991374	0.0	denovo_WM_7:30:0.270	denovo_WM_7:31:0.727	denovo_WM_7:46:0.860
chr10	32478421	32478547	reg1009354.p1	4.782	+	TSC_hg19_v1_chr10_-_32345341 NM_004521	-133124	-	TSC_hg19_v1_chr10_-_32345335 BC080604 BC010885 BC111042 AK289413 AK299542 BC065267 AK307502	-133170	-	BC126279 BC126281 TSC_hg19_v1_chr10_-_32345152 X65873	-133316	-	CU691366 TSC_hg19_v1_chr10_-_32636082 AK092304 AX747467 AK309822	157478	-	TSC_hg19_v1_chr10_-_32636116 AF277374 FJ230887 NM_025209	157624	-	TSC_hg19_v1_chr10_-_32636137 BC036529 CR749375	157665	-	NM_004521|KIF5B|3799|kinesin family member 5B##BC080604|KIF5B|3799|kinesin family member 5B##BC010885|KIF5B|3799|kinesin family member 5B##BC111042|KIF5B|3799|kinesin family member 5B##AK289413|KIF5B|3799|kinesin family member 5B##AK299542|KIF5B|3799|kinesin family member 5B##BC065267|KIF5B|3799|kinesin family member 5B##AK307502|KIF5B|3799|kinesin family member 5B##BC126279|KIF5B|3799|kinesin family member 5B##BC126281|KIF5B|3799|kinesin family member 5B##X65873|KIF5B|3799|kinesin family member 5B##AK092304|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309822|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF277374|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_025209|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##BC036529|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##CR749375|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)	0.996013	0.0	
chr4	40056164	40056333	reg1008501.p1	4.782	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-76655	-	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	-76910	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-356444	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	2284	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	142393	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	281197	+	BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9	0.983425	0.0	denovo_WM_7:-22:0.983
chr16	9038066	9038246	reg1003747.p1	4.781	+	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	-75296	-	NM_001042476 BC001333	-75904	-	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-146458	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	19139	-	TSC_hg19_v1_chr16_+_9185545 NM_014117	147384	+	TSC_hg19_v1_chr16_+_9185577 BC113570	147447	+	BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##BC113570|C16orf72|29035|chromosome 16 open reading frame 72	0.827706	0.0	denovo_WM_7:-58:0.369	denovo_WM_7:-60:0.333
chr22	38142422	38142545	reg1000652.p2	4.781	+	TSC_hg19_v1_chr22_+_38142316 BC003618	-166	+	TSC_hg19_v1_chr22_+_38142255 AF281030	-227	+	TSC_hg19_v1_chr22_+_38142248 BC022200	-237	+	NM_005318 TSC_hg19_v1_chr22_+_38201113	58632	+	TSC_hg19_v1_chr22_+_38201235 AK091372 AK299209 AK312583 AX746942 BC000145 BC029046	58774	+	TSC_hg19_v1_chr22_+_38201323 CR456502 CU013100 CU013388 DQ890977 DQ894151 AB385232 CR542220	58942	+	BC003618|TRIOBP|11078|TRIO and F-actin binding protein##AF281030|TRIOBP|11078|TRIO and F-actin binding protein##BC022200|TRIOBP|11078|TRIO and F-actin binding protein##NM_005318|H1F0|3005|H1 histone family, member 0##AK091372|H1F0|3005|H1 histone family, member 0##AK312583|H1F0|3005|H1 histone family, member 0##BC000145|H1F0|3005|H1 histone family, member 0##BC029046|H1F0|3005|H1 histone family, member 0##CR456502|H1F0|3005|H1 histone family, member 0##CU013100|H1F0|3005|H1 histone family, member 0##CU013388|H1F0|3005|H1 histone family, member 0##DQ890977|H1F0|3005|H1 histone family, member 0##DQ894151|H1F0|3005|H1 histone family, member 0##CR542220|H1F0|3005|H1 histone family, member 0	0.0	0.0	
chr2	91822504	91822610	reg1011228.p1	4.781	+	TSC_hg19_v1_chr2_+_90211706 Z69013	-1610839	+	TSC_hg19_v1_chr2_+_90077732 AJ131061	-1744803	+	Z27171 L06158 AF490907 X72480 AF490924 X72424 X72441 X72477 U44792 X72427 AJ548508 L01279 L38434 M74019 M87478 S67637 U43765 U43766 U43770 U43773 U66190 X85996 X85997 Y14736 AJ010446 BC073775 AF417853 TSC_hg19_v1_chr2_-_89619885 BC070334	-2202704	-	TSC_hg19_v1_chr2_-_91847997 BC030764	25446	-	AK097438 BC021716 NM_144705 AK296678 CU692394	3714693	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	3868925	+	BC070334|IGKC|3514|immunoglobulin kappa constant##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein	0.346882	0.0	denovo_WM_7:0:0.231
chr7	72505702	72505873	reg1012402.p1	4.781	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-80545	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-108913	+	TSC_hg19_v1_chr7_+_72395623 AK123814 AB289621	-110162	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	63244	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	217037	-	AK057366 AY081948 AY081949 NM_178125	236297	-	BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##AK123814|POM121|9883|POM121 membrane glycoprotein##AB289621|POM121|9883|POM121 membrane glycoprotein##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50	0.991806	0.0	denovo_WM_7:-27:0.503	denovo_WM_7:-30:0.335
chr13	21328405	21328523	reg1007714.p2	4.780	+	TSC_hg19_v1_chr13_-_21295740 L23206	-32653	-	AY078238 BC036243 NM_138284 AF458062	-50952	+	TSC_hg19_v1_chr13_+_21183940 BC039413	-144487	+	DQ823637 BC018091 NM_174928 TSC_hg19_v1_chr13_-_21348079	19602	-	TSC_hg19_v1_chr13_-_21348081 AK055408 AK316604	19623	-	BC050680 AB051508 AB384273 AK057924 BC098402 TSC_hg19_v1_chr13_-_21476886 AK302760	148406	-	AY078238|IL17D|53342|interleukin 17D##BC036243|IL17D|53342|interleukin 17D##NM_138284|IL17D|53342|interleukin 17D##AF458062|IL17D|53342|interleukin 17D##DQ823637|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC018091|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##NM_174928|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##AK316604|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC050680|XPO4|64328|exportin 4##AB051508|XPO4|64328|exportin 4##AK057924|XPO4|64328|exportin 4##BC098402|XPO4|64328|exportin 4##AK302760|XPO4|64328|exportin 4	0.985078	0.0	denovo_WM_7:-49:0.203	denovo_WM_7:-52:0.318
chr1	206736202	206736344	reg1007103.p1	4.779	+	TSC_hg19_v1_chr1_+_206730897 CU692112 EU831661	-5376	+	AL832784 AY261332 AK292039 TSC_hg19_v1_chr1_+_206730613	-5665	+	TSC_hg19_v1_chr1_+_206730542 BC042651 AY216268	-5753	+	DQ891590 DQ894784 TSC_hg19_v1_chr1_-_206785812 BC039134 BC058905 AK225259 BC001585 AF220417 AF262403 AK294536 AK001852	49482	-	TSC_hg19_v1_chr1_-_206785905 NM_001201478 NM_006893	49610	-	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	72571	+	EU831661|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AL832784|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY261332|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK292039|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC042651|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY216268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ891590|EIF2D|1939|eukaryotic translation initiation factor 2D##DQ894784|EIF2D|1939|eukaryotic translation initiation factor 2D##BC039134|EIF2D|1939|eukaryotic translation initiation factor 2D##BC058905|EIF2D|1939|eukaryotic translation initiation factor 2D##AK225259|EIF2D|1939|eukaryotic translation initiation factor 2D##BC001585|EIF2D|1939|eukaryotic translation initiation factor 2D##AF220417|EIF2D|1939|eukaryotic translation initiation factor 2D##AF262403|EIF2D|1939|eukaryotic translation initiation factor 2D##AK294536|EIF2D|1939|eukaryotic translation initiation factor 2D##AK001852|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_001201478|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_006893|EIF2D|1939|eukaryotic translation initiation factor 2D##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	0.072955	0.0	
chr1	27962931	27963027	reg1009783.p1	4.779	+	TSC_hg19_v1_chr1_-_27961656 BC064382 AK130188 NM_005248	-1293	-	M27454 AK301078 BC002836 AK304846 NM_001042729	-9904	-	AK125143 TSC_hg19_v1_chr1_-_27952648 NM_001042747	-10309	-	TSC_hg19_v1_chr1_-_27998690 X02492 BC011601 BC015603	35698	-	TSC_hg19_v1_chr1_-_27998704 AK024814 AK314488	35730	-	TSC_hg19_v1_chr1_-_27998734 NM_002038 NM_022872 NM_022873	35760	-	BC064382|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##AK130188|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_005248|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##M27454|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##AK301078|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042729|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##AK125143|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042747|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##X02492|IFI6|2537|interferon, alpha-inducible protein 6##BC011601|IFI6|2537|interferon, alpha-inducible protein 6##BC015603|IFI6|2537|interferon, alpha-inducible protein 6##AK024814|IFI6|2537|interferon, alpha-inducible protein 6##AK314488|IFI6|2537|interferon, alpha-inducible protein 6##NM_002038|IFI6|2537|interferon, alpha-inducible protein 6##NM_022872|IFI6|2537|interferon, alpha-inducible protein 6##NM_022873|IFI6|2537|interferon, alpha-inducible protein 6	1.027025	0.0	
chr19	1208252	1208350	reg1012118.p2	4.779	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	-1128	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	-1610	+	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	-2495	+	BC028156 NM_152769	29613	-	TSC_hg19_v1_chr19_+_1241763 BC002389 BC004426 BC018817 NM_001001975 NM_001687	33451	+	AK094357 S87916 S87918 X63422 X63423 TSC_hg19_v1_chr19_+_1241766	33465	+	BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC028156|C19orf26|255057|chromosome 19 open reading frame 26##NM_152769|C19orf26|255057|chromosome 19 open reading frame 26##BC002389|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC004426|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC018817|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##NM_001001975|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##NM_001687|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##AK094357|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##S87916|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##S87918|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##X63422|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##X63423|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	0.99496	0.0	
chr3	103232079	103232216	reg1015287.p1	4.779	+	AY090780 NM_175056 BC143817	-1078280	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-1663773	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-1685187	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	1853433	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	1853675	+	CR749655 TSC_hg19_v1_chr3_-_105421064	2188907	-	AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b	0.990333	0.0	denovo_WM_7:0:0.990
chr7	153470287	153470401	reg1011934.p1	4.779	+	TSC_hg19_v1_chr7_+_152456872 NM_001040135 NM_020445 AK315534 BC008682 AK294292 AK316078 AF086920 BC015207 AF023453 CU677239 CU679037 DQ894754 EU176295	-1013451	+	AB590731 CU692064 TSC_hg19_v1_chr7_-_152373227 BC042137 AK313607 Y08837 AF035587 NM_005431	-1097136	-	TSC_hg19_v1_chr7_+_152161285 BC036622	-1309105	+	TSC_hg19_v1_chr7_+_153584383 BX647966 NM_001039350	114056	+	TSC_hg19_v1_chr7_+_153749746 M96859 NM_130797	279414	+	AK309760 AK308993 AK293582 NM_001936 TSC_hg19_v1_chr7_+_154002377 M96860 AK294483 AB384749	532041	+	NM_001040135|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##NM_020445|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK315534|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC008682|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK294292|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AK316078|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AF086920|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC015207|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##AF023453|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##DQ894754|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##EU176295|ACTR3B|57180|ARP3 actin-related protein 3 homolog B (yeast)##BC042137|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##AK313607|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##Y08837|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##AF035587|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##NM_005431|XRCC2|7516|X-ray repair complementing defective repair in Chinese hamster cells 2##BC036622|LOC100128822|100128822|uncharacterized LOC100128822##BX647966|DPP6|1804|dipeptidyl-peptidase 6##NM_001039350|DPP6|1804|dipeptidyl-peptidase 6##M96859|DPP6|1804|dipeptidyl-peptidase 6##NM_130797|DPP6|1804|dipeptidyl-peptidase 6##AK309760|DPP6|1804|dipeptidyl-peptidase 6##AK308993|DPP6|1804|dipeptidyl-peptidase 6##AK293582|DPP6|1804|dipeptidyl-peptidase 6##NM_001936|DPP6|1804|dipeptidyl-peptidase 6##M96860|DPP6|1804|dipeptidyl-peptidase 6##AK294483|DPP6|1804|dipeptidyl-peptidase 6	0.0	0.0	
chr9	132721095	132721275	reg1004911.p1	4.779	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-123420	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-123463	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-123501	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	84169	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	84303	-	BC039728 NM_001136557 NM_001136558 NM_020960	94799	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	1.32678	0.0	
chr1	43230036	43230154	reg1009409.p1	4.778	+	AF497644 BC030524 AK298992 AK096063 AK291197 NM_001123395 NM_001185117 NM_148960	-24267	-	BC020164 TSC_hg19_v1_chr1_+_43162416	-67694	+	TSC_hg19_v1_chr1_+_43148644 BC013838	-81511	+	AK027680 AK297980 TSC_hg19_v1_chr1_-_43232700 BC091513 BC143961 BC143962 AK075418 BC004160 AK027648 AF097431 AF097432 BC108311 AK027697 AK300210 BC068461	2593	-	TSC_hg19_v1_chr1_-_43232730 NM_001146289 NM_001243246 NM_022356	2647	-	TSC_hg19_v1_chr1_+_43232919 NM_024097	2820	+	AF497644|CLDN19|149461|claudin 19##BC030524|CLDN19|149461|claudin 19##AK298992|CLDN19|149461|claudin 19##AK096063|CLDN19|149461|claudin 19##AK291197|CLDN19|149461|claudin 19##NM_001123395|CLDN19|149461|claudin 19##NM_001185117|CLDN19|149461|claudin 19##NM_148960|CLDN19|149461|claudin 19##BC020164|YBX1|4904|Y box binding protein 1##BC013838|YBX1|4904|Y box binding protein 1##AK027680|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK297980|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC091513|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC143961|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC143962|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK075418|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC004160|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK027648|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AF097431|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AF097432|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC108311|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK027697|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK300210|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC068461|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_001146289|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_001243246|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_022356|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_024097|C1orf50|79078|chromosome 1 open reading frame 50	1.35132	0.0	denovo_WM_7:7:0.258	denovo_WM_7:26:0.235
chr11	130267863	130267963	reg1011670.p2	4.777	+	TSC_hg19_v1_chr11_-_130184509 AK314701 BC030580 BC049375 BC071729 NM_014155	-83381	-	TSC_hg19_v1_chr11_+_130184331 AK091840 AX747213	-83541	+	TSC_hg19_v1_chr11_-_130184330 AF161548	-83582	-	BC113874 TSC_hg19_v1_chr11_-_130298419 BC089435	30449	-	TSC_hg19_v1_chr11_-_130298505 NM_007037	30607	-	TSC_hg19_v1_chr11_+_130318539 AJ315733 BC109114 NM_139055	50749	+	AK314701|ZBTB44|29068|zinc finger and BTB domain containing 44##BC030580|ZBTB44|29068|zinc finger and BTB domain containing 44##BC049375|ZBTB44|29068|zinc finger and BTB domain containing 44##BC071729|ZBTB44|29068|zinc finger and BTB domain containing 44##NM_014155|ZBTB44|29068|zinc finger and BTB domain containing 44##AK091840|FLJ34521|646383|uncharacterized LOC646383##AF161548|ZBTB44|29068|zinc finger and BTB domain containing 44##BC113874|ADAMTS8|11095|ADAM metallopeptidase with thrombospondin type 1 motif, 8##BC089435|ADAMTS8|11095|ADAM metallopeptidase with thrombospondin type 1 motif, 8##NM_007037|ADAMTS8|11095|ADAM metallopeptidase with thrombospondin type 1 motif, 8##AJ315733|ADAMTS15|170689|ADAM metallopeptidase with thrombospondin type 1 motif, 15##BC109114|ADAMTS15|170689|ADAM metallopeptidase with thrombospondin type 1 motif, 15##NM_139055|ADAMTS15|170689|ADAM metallopeptidase with thrombospondin type 1 motif, 15	0.0	0.0	
chr16	81031627	81031715	reg1008304.p2	4.777	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	-193624	-	AF125108 NM_130897 BC054892 BC035232	-456783	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1397056	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	8413	+	TSC_hg19_v1_chr16_+_81040132 BC007334	8472	+	TSC_hg19_v1_chr16_-_81040491 AF201935 BC032631 NM_020188	8799	-	AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N##AF201935|C16orf61|56942|chromosome 16 open reading frame 61##BC032631|C16orf61|56942|chromosome 16 open reading frame 61##NM_020188|C16orf61|56942|chromosome 16 open reading frame 61	0.991633	0.0	
chr17	1529477	1529629	reg1003657.p2	4.777	+	BC082976 TSC_hg19_v1_chr17_-_1466077 BC027177 D30036 M73704 BC045108 BC068538 NM_006224	-63471	-	TSC_hg19_v1_chr17_-_1420177 AK312844 NM_001135642 NM_016532 NM_130766	-109374	-	TSC_hg19_v1_chr17_-_1419907 DQ892815 DQ896061 AB529166 AK297955 AK303907 AK307293 AB036829 AB036830 AK312585 BC004362	-109587	-	AF289592 TSC_hg19_v1_chr17_-_1531711 AB120364	2087	-	TSC_hg19_v1_chr17_-_1532115 BC027923 NM_152346 BC071859	2591	-	D63483 AK310174 AB052950 AB052949 AB052947 D86864 TSC_hg19_v1_chr17_-_1549050 AK291810 AB052948 BC039735 NM_003693 NM_145350 NM_145352 AK298737	19484	-	BC082976|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC027177|PITPNA|5306|phosphatidylinositol transfer protein, alpha##D30036|PITPNA|5306|phosphatidylinositol transfer protein, alpha##M73704|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC045108|PITPNA|5306|phosphatidylinositol transfer protein, alpha##BC068538|PITPNA|5306|phosphatidylinositol transfer protein, alpha##NM_006224|PITPNA|5306|phosphatidylinositol transfer protein, alpha##AK312844|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_001135642|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_016532|INPP5K|51763|inositol polyphosphate-5-phosphatase K##NM_130766|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ892815|INPP5K|51763|inositol polyphosphate-5-phosphatase K##DQ896061|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK297955|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK303907|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK307293|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036829|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AB036830|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AK312585|INPP5K|51763|inositol polyphosphate-5-phosphatase K##BC004362|INPP5K|51763|inositol polyphosphate-5-phosphatase K##AF289592|SLC43A2|124935|solute carrier family 43, member 2##AB120364|SLC43A2|124935|solute carrier family 43, member 2##BC027923|SLC43A2|124935|solute carrier family 43, member 2##NM_152346|SLC43A2|124935|solute carrier family 43, member 2##BC071859|SLC43A2|124935|solute carrier family 43, member 2##D63483|SCARF1|8578|scavenger receptor class F, member 1##AK310174|SCARF1|8578|scavenger receptor class F, member 1##AB052950|SCARF1|8578|scavenger receptor class F, member 1##AB052949|SCARF1|8578|scavenger receptor class F, member 1##AB052947|SCARF1|8578|scavenger receptor class F, member 1##D86864|SCARF1|8578|scavenger receptor class F, member 1##AK291810|SCARF1|8578|scavenger receptor class F, member 1##AB052948|SCARF1|8578|scavenger receptor class F, member 1##BC039735|SCARF1|8578|scavenger receptor class F, member 1##NM_003693|SCARF1|8578|scavenger receptor class F, member 1##NM_145350|SCARF1|8578|scavenger receptor class F, member 1##NM_145352|SCARF1|8578|scavenger receptor class F, member 1##AK298737|SCARF1|8578|scavenger receptor class F, member 1	0.999745	0.0	denovo_WM_7:-76:0.298	denovo_WM_7:-77:0.298	denovo_WM_7:-78:0.298
chr19	8009289	8009409	reg1009617.p2	4.777	+	TSC_hg19_v1_chr19_-_8008615 AK289634 NM_006351	-693	-	AF026030 BC000679 AB590328 CU689670 BC033628 TSC_hg19_v1_chr19_-_8008548 DQ891301 DQ894486 AK223062 AK309415 AF041254	-797	-	TSC_hg19_v1_chr19_-_7991004 BC062702 AK098834 NM_206833	-18333	-	TSC_hg19_v1_chr19_-_8070526 U38175 BC003376 NM_001419	61176	-	AK292662 NM_001201359 NM_005624	108296	+	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	108598	+	AK289634|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##NM_006351|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF026030|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC033628|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ891301|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ894486|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK223062|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK309415|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF041254|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC062702|CTXN1|404217|cortexin 1##AK098834|CTXN1|404217|cortexin 1##NM_206833|CTXN1|404217|cortexin 1##U38175|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##BC003376|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##NM_001419|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25	0.992323	0.999019	denovo_WM_7:24:0.569	CTCF.p2:-85:0.983
chr10	1716879	1717041	reg1011104.p1	4.776	+	TSC_hg19_v1_chr10_+_1102822 AK292591	-614134	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-614191	+	BC057827 TSC_hg19_v1_chr10_-_1102645	-614308	-	AF034837 NM_018702	62709	-	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	1392787	+	AK092597 AX747622 NM_001242339	1393858	+	AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC057827|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet	0.0	0.0	
chr21	43283868	43283973	reg1013640.p2	4.776	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-96653	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-96698	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-403837	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	15578	-	BC062323 AL833323 NM_199050	62869	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	90163	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	0.999378	0.0	denovo_WM_7:43:0.872
chr4	126708040	126708220	reg1009506.p1	4.776	+	NM_024582	-470564	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	-1074316	-	AK026960 BC063856 NM_005841	-2387457	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	1846009	+	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	1943479	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	1995303	+	NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like	1.993293	0.0	
chr4	142142732	142142832	reg1008500.p2	4.776	+	TSC_hg19_v1_chr4_+_142142087 AK294089 AK223609 AK002106 AJ006591	-696	+	TSC_hg19_v1_chr4_+_142142051 NM_014487 AK315463 BC004421	-727	+	TSC_hg19_v1_chr4_-_142054516 AB033040 NM_020724	-88251	-	AK290619 NM_000585 NM_172175 BC018149 U14407	414984	+	NM_001101669 NM_003866	1624821	-	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	1963282	+	AK294089|ZNF330|27309|zinc finger protein 330##AK223609|ZNF330|27309|zinc finger protein 330##AK002106|ZNF330|27309|zinc finger protein 330##AJ006591|ZNF330|27309|zinc finger protein 330##NM_014487|ZNF330|27309|zinc finger protein 330##AK315463|ZNF330|27309|zinc finger protein 330##BC004421|ZNF330|27309|zinc finger protein 330##AB033040|RNF150|57484|ring finger protein 150##NM_020724|RNF150|57484|ring finger protein 150##AK290619|IL15|3600|interleukin 15##NM_000585|IL15|3600|interleukin 15##NM_172175|IL15|3600|interleukin 15##BC018149|IL15|3600|interleukin 15##U14407|IL15|3600|interleukin 15##NM_001101669|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##NM_003866|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38	0.988452	0.0	denovo_WM_7:11:0.787
chr7	139411909	139412034	reg1013034.p1	4.776	+	NM_001080511	-203298	+	BC110858 BC104963 BC104965 AK126174 NM_198508	-243539	-	TSC_hg19_v1_chr7_+_139044997 AB528652 EU832106 EU832200 CU677843 AF151832 AF151817	-366957	+	TSC_hg19_v1_chr7_-_139477798 AF208291 AF326592 NM_001113239 NM_022740	65934	-	TSC_hg19_v1_chr7_+_139478042 BC014117 NM_001130966 NM_001166254	66068	+	NM_001061 NM_001166253 NM_030984 TSC_hg19_v1_chr7_+_139529052 BC041157 AK296069 AK301164 AK303440 AK301049 AB590730 M74055 S60133	117121	+	NM_001080511|CLEC2L|154790|C-type lectin domain family 2, member L##BC110858|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104963|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104965|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##AK126174|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##NM_198508|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##EU832106|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##EU832200|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151832|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151817|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF208291|HIPK2|28996|homeodomain interacting protein kinase 2##AF326592|HIPK2|28996|homeodomain interacting protein kinase 2##NM_001113239|HIPK2|28996|homeodomain interacting protein kinase 2##NM_022740|HIPK2|28996|homeodomain interacting protein kinase 2##BC014117|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001130966|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166254|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001061|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166253|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_030984|TBXAS1|6916|thromboxane A synthase 1 (platelet)##BC041157|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK296069|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301164|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK303440|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301049|TBXAS1|6916|thromboxane A synthase 1 (platelet)##M74055|TBXAS1|6916|thromboxane A synthase 1 (platelet)##S60133|TBXAS1|6916|thromboxane A synthase 1 (platelet)	0.0	0.0	
chr12	121744092	121744228	reg1008413.p1	4.775	+	AF287630 AF287631 NM_006549 NM_153499 NM_153500 NM_172214 NM_172215 NM_172216	-8050	-	TSC_hg19_v1_chr12_-_121735623 AK292072	-8565	-	TSC_hg19_v1_chr12_-_121734549 NM_172226	-9535	-	BC034243 TSC_hg19_v1_chr12_-_121785683	41507	-	TSC_hg19_v1_chr12_-_121790158 AF191339 CU674542 CU675341	45992	-	TSC_hg19_v1_chr12_-_121790212 BC001081 BC001950 BC006301 AK315451	46029	-	AF287630|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AF287631|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_006549|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153499|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_153500|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172214|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172215|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172216|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##AK292072|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##NM_172226|CAMKK2|10645|calcium/calmodulin-dependent protein kinase kinase 2, beta##BC034243|ANAPC5|51433|anaphase promoting complex subunit 5##AF191339|ANAPC5|51433|anaphase promoting complex subunit 5##BC001081|ANAPC5|51433|anaphase promoting complex subunit 5##BC001950|ANAPC5|51433|anaphase promoting complex subunit 5##BC006301|ANAPC5|51433|anaphase promoting complex subunit 5##AK315451|ANAPC5|51433|anaphase promoting complex subunit 5	0.998812	0.0	denovo_WM_7:21:0.953
chr1	234631149	234631271	reg1009205.p1	4.775	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	-16350	-	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	-121838	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-281204	+	TSC_hg19_v1_chr1_-_234743489 BC020516	112316	-	TSC_hg19_v1_chr1_-_234743841 AK299768	112621	-	TSC_hg19_v1_chr1_-_234743861 AK309579	112648	-	NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##BC037878|SLC35F3|148641|solute carrier family 35, member F3##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.0	0.0	
chr2	175380498	175380635	reg1008013.p1	4.775	+	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-28769	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-120008	+	TSC_hg19_v1_chr2_+_175260466 NM_001193528 NM_024583 AK296558 AK295357 AK295357 AK057912 AK057912 BC007344	-120089	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	81915	-	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	118731	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	167188	-	BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##NM_001193528|SCRN3|79634|secernin 3##NM_024583|SCRN3|79634|secernin 3##AK296558|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1	0.578958	0.0	
chr3	23898447	23898556	reg1003751.p1	4.775	+	AK295354 NM_001202476	-46568	+	AK314854 TSC_hg19_v1_chr3_+_23847474	-51027	+	TSC_hg19_v1_chr3_+_23847445 NM_003341 NM_182666 BC009139	-51091	+	NM_001253379 NM_001253384 NM_002948	59793	+	TSC_hg19_v1_chr3_-_23958419 BC012145 BC066940	59939	-	TSC_hg19_v1_chr3_-_23958512 NM_020345	60018	-	NM_001202476|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##AK314854|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_003341|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_182666|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##BC009139|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_001253379|RPL15|6138|ribosomal protein L15##NM_001253384|RPL15|6138|ribosomal protein L15##NM_002948|RPL15|6138|ribosomal protein L15##BC012145|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##BC066940|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##NM_020345|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1	0.991631	0.0	denovo_WM_7:0:0.228	denovo_WM_7:0:0.228	denovo_WM_7:-1:0.228	denovo_WM_7:1:0.228
chr15	50645830	50645947	reg1004413.p2	4.774	+	AK308833 NM_002112	-87727	-	TSC_hg19_v1_chr15_+_50474425 AK290262 NM_001159629 NM_003645 AF096290 AK222859 D88308 AK223145 BC057770 CU691220	-171398	+	TSC_hg19_v1_chr15_-_50411492 BC144298 BC144297 NM_024837	-234422	-	TSC_hg19_v1_chr15_-_50647062 BC068063 BC009935 AK000900	1181	-	TSC_hg19_v1_chr15_+_50647161 BC014238 BC004103	1272	+	TSC_hg19_v1_chr15_-_50647316 BC016910 D13316 BC050702 AK303901	1412	-	AK308833|HDC|3067|histidine decarboxylase##NM_002112|HDC|3067|histidine decarboxylase##AK290262|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_001159629|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_003645|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AF096290|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK222859|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##D88308|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK223145|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC057770|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC144298|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC144297|ATP8B4|79895|ATPase, class I, type 8B, member 4##NM_024837|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC068063|FLJ10038|55056|uncharacterized protein FLJ10038##BC009935|FLJ10038|55056|uncharacterized protein FLJ10038##AK000900|FLJ10038|55056|uncharacterized protein FLJ10038##BC014238|LOC100129387|100129387|uncharacterized LOC100129387##BC004103|LOC100129387|100129387|uncharacterized LOC100129387##BC016910|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##D13316|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##BC050702|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK303901|GABPB1|2553|GA binding protein transcription factor, beta subunit 1	0.304073	0.0	
chr22	43476742	43476895	reg1009844.p1	4.774	+	TSC_hg19_v1_chr22_-_43411156 NM_001184970	-65641	-	TSC_hg19_v1_chr22_-_43411136 AF128536	-65679	-	AL136845 NM_001184971	-120932	-	TSC_hg19_v1_chr22_-_43485410 AF104927 AF173935 AK315658 BC009058 AK095996 BC014968 AL136687 NM_012263	8569	-	NM_001197 TSC_hg19_v1_chr22_+_43506755 BC001599 U49730 U34584	29954	+	TSC_hg19_v1_chr22_-_43539355 BC030985 AL359401 AL359403 AK314059	62534	-	NM_001184970|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##AF128536|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##AL136845|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##NM_001184971|PACSIN2|11252|protein kinase C and casein kinase substrate in neurons 2##AF104927|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AF173935|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AK315658|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##BC009058|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AK095996|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##BC014968|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##AL136687|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##NM_012263|TTLL1|25809|tubulin tyrosine ligase-like family, member 1##NM_001197|BIK|638|BCL2-interacting killer (apoptosis-inducing)##BC001599|BIK|638|BCL2-interacting killer (apoptosis-inducing)##U49730|BIK|638|BCL2-interacting killer (apoptosis-inducing)##U34584|BIK|638|BCL2-interacting killer (apoptosis-inducing)##BC030985|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359401|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AL359403|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)##AK314059|MCAT|27349|malonyl CoA:ACP acyltransferase (mitochondrial)	0.999567	0.0	denovo_WM_7:98:0.353	denovo_WM_7:99:0.268
chr7	102795726	102795904	reg1010401.p1	4.774	+	AY357337 TSC_hg19_v1_chr7_-_102789708 CR936639 NM_001122838 NM_198990	-6248	-	TSC_hg19_v1_chr7_+_102715617 AF275808	-80098	+	TSC_hg19_v1_chr7_+_102715605 AK075500 AK301565 AK225082 AK291818 BC003586	-80221	+	AL834175 BC150309 TSC_hg19_v1_chr7_-_102920725 AK302046 BC068601 BC033022 AK131353	124893	-	AK097711 BC094802 BC023575 TSC_hg19_v1_chr7_-_102920949	125086	-	TSC_hg19_v1_chr7_+_102937894 NM_004279 AK057656 AK000994 AK289864 BC010398 AF054182 AK098616 AK297354 AK309928 DQ892913 DQ896162	142072	+	AY357337|NAPEPLD|222236|N-acyl phosphatidylethanolamine phospholipase D##CR936639|NAPEPLD|222236|N-acyl phosphatidylethanolamine phospholipase D##NM_001122838|NAPEPLD|222236|N-acyl phosphatidylethanolamine phospholipase D##NM_198990|NAPEPLD|222236|N-acyl phosphatidylethanolamine phospholipase D##AF275808|ARMC10|83787|armadillo repeat containing 10##AK075500|ARMC10|83787|armadillo repeat containing 10##AK301565|ARMC10|83787|armadillo repeat containing 10##AK225082|ARMC10|83787|armadillo repeat containing 10##AK291818|ARMC10|83787|armadillo repeat containing 10##BC003586|ARMC10|83787|armadillo repeat containing 10##AL834175|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##BC150309|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##AK302046|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##BC068601|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##BC033022|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##AK131353|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##AK097711|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##BC094802|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##BC023575|DPY19L2P2|349152|dpy-19-like 2 pseudogene 2 (C. elegans)##NM_004279|PMPCB|9512|peptidase (mitochondrial processing) beta##AK057656|PMPCB|9512|peptidase (mitochondrial processing) beta##AK000994|PMPCB|9512|peptidase (mitochondrial processing) beta##AK289864|PMPCB|9512|peptidase (mitochondrial processing) beta##BC010398|PMPCB|9512|peptidase (mitochondrial processing) beta##AF054182|PMPCB|9512|peptidase (mitochondrial processing) beta##AK098616|PMPCB|9512|peptidase (mitochondrial processing) beta##AK297354|PMPCB|9512|peptidase (mitochondrial processing) beta##AK309928|PMPCB|9512|peptidase (mitochondrial processing) beta##DQ892913|PMPCB|9512|peptidase (mitochondrial processing) beta##DQ896162|PMPCB|9512|peptidase (mitochondrial processing) beta	0.99747	0.0	
chr8	126350129	126350267	reg1012035.p1	4.774	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-246101	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-246141	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-246176	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	92381	+	TSC_hg19_v1_chr8_-_126963395 BX648371	613215	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1220357	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	1.359	0.874223	CTCF.p2:-20:0.874	denovo_WM_7:-44:0.232	denovo_WM_7:-63:0.257
chr17	1932732	1932866	reg1012201.p2	4.773	+	BC128608 NM_178568	-4622	-	TSC_hg19_v1_chr17_+_1733335 M63488 AB209732 BC018126 AB385027 HQ258560	-199450	+	TSC_hg19_v1_chr17_+_1733284 NM_002945 AK289704	-199515	+	TSC_hg19_v1_chr17_+_1933446 S81752 U34880 AF321876 NM_001383 AK314015 BC096086 BC096087 BC096088 BC096089 BC003099	622	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	12509	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	25599	+	BC128608|RTN4RL1|146760|reticulon 4 receptor-like 1##NM_178568|RTN4RL1|146760|reticulon 4 receptor-like 1##M63488|RPA1|6117|replication protein A1, 70kDa##AB209732|RPA1|6117|replication protein A1, 70kDa##BC018126|RPA1|6117|replication protein A1, 70kDa##HQ258560|RPA1|6117|replication protein A1, 70kDa##NM_002945|RPA1|6117|replication protein A1, 70kDa##AK289704|RPA1|6117|replication protein A1, 70kDa##S81752|DPH1|1801|DPH1 homolog (S. cerevisiae)##U34880|DPH1|1801|DPH1 homolog (S. cerevisiae)##AF321876|DPH1|1801|DPH1 homolog (S. cerevisiae)##NM_001383|DPH1|1801|DPH1 homolog (S. cerevisiae)##AK314015|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096086|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096087|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096088|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096089|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC003099|DPH1|1801|DPH1 homolog (S. cerevisiae)##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1	1.996557	0.0	denovo_WM_7:-39:0.864	denovo_WM_7:-54:0.883
chr18	48359132	48359312	reg1012306.p2	4.773	+	BC029860 NM_001127174	-7480	-	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	-12857	-	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	-272725	+	TSC_hg19_v1_chr18_+_48405434 NM_001168335 NM_002396	46212	+	TSC_hg19_v1_chr18_+_48405496 BC000147 AK313391 M55905	46321	+	TSC_hg19_v1_chr18_+_48494384 NM_018696	135128	+	BC029860|MRO|83876|maestro##NM_001127174|MRO|83876|maestro##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##NM_001168335|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##NM_002396|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##BC000147|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##AK313391|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##M55905|ME2|4200|malic enzyme 2, NAD(+)-dependent, mitochondrial##NM_018696|ELAC1|55520|elaC homolog 1 (E. coli)	0.853987	0.0	denovo_WM_7:-40:0.854
chr18	60193375	60193520	reg1010247.p1	4.773	+	NM_017742 TSC_hg19_v1_chr18_+_60190696 BC006340	-2693	+	AB209762 AF018253 NM_003839 AB527346	-200897	+	TSC_hg19_v1_chr18_+_59855176 AB384606	-338237	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	189217	+	TSC_hg19_v1_chr18_+_60383911 AB011178	190479	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	190861	+	NM_017742|ZCCHC2|54877|zinc finger, CCHC domain containing 2##BC006340|ZCCHC2|54877|zinc finger, CCHC domain containing 2##AB209762|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##AF018253|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_003839|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1	0.0	0.0	
chr3	125235582	125235721	reg1011095.p1	4.773	+	AF039019 AL833616 AF432210 AJ236885 L04282 BC035591 BC018971 AK314203 TSC_hg19_v1_chr3_-_125094153 BC050260 NM_021964	-141551	-	AK123001 TSC_hg19_v1_chr3_-_124931591 AX721165 AK131070 NM_024628	-304066	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	-305434	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	3380	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	3402	-	TSC_hg19_v1_chr3_-_125314371 NM_022776	78722	-	AF039019|ZNF148|7707|zinc finger protein 148##AL833616|ZNF148|7707|zinc finger protein 148##AF432210|ZNF148|7707|zinc finger protein 148##AJ236885|ZNF148|7707|zinc finger protein 148##L04282|ZNF148|7707|zinc finger protein 148##BC035591|ZNF148|7707|zinc finger protein 148##BC018971|ZNF148|7707|zinc finger protein 148##AK314203|ZNF148|7707|zinc finger protein 148##BC050260|ZNF148|7707|zinc finger protein 148##NM_021964|ZNF148|7707|zinc finger protein 148##AK123001|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_024628|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##NM_003794|SNX4|8723|sorting nexin 4##NM_022776|OSBPL11|114885|oxysterol binding protein-like 11	0.981456	0.0	denovo_WM_7:41:0.960
chr7	37955228	37955377	reg1008668.p1	4.773	+	BC036816 NM_016616	-67104	+	AB529245 AY288420 BC120951 BC120952 NM_181791	-175307	+	BC043356 TSC_hg19_v1_chr7_+_37723380	-231920	+	AF026692 BC047684 BC058911 AK313029 TSC_hg19_v1_chr7_-_37956420 AK303977 AK302357	1109	-	TSC_hg19_v1_chr7_-_37956526 BC032828 NM_003014	1218	-	AY027862 NM_001242946 NM_017549 TSC_hg19_v1_chr7_+_37960259 BC018299	4921	+	BC036816|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##NM_016616|TXNDC3|51314|thioredoxin domain containing 3 (spermatozoa)##AY288420|GPR141|353345|G protein-coupled receptor 141##BC120951|GPR141|353345|G protein-coupled receptor 141##BC120952|GPR141|353345|G protein-coupled receptor 141##NM_181791|GPR141|353345|G protein-coupled receptor 141##AF026692|SFRP4|6424|secreted frizzled-related protein 4##BC047684|SFRP4|6424|secreted frizzled-related protein 4##BC058911|SFRP4|6424|secreted frizzled-related protein 4##AK313029|SFRP4|6424|secreted frizzled-related protein 4##AK303977|SFRP4|6424|secreted frizzled-related protein 4##AK302357|SFRP4|6424|secreted frizzled-related protein 4##BC032828|SFRP4|6424|secreted frizzled-related protein 4##NM_003014|SFRP4|6424|secreted frizzled-related protein 4##AY027862|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_001242946|EPDR1|54749|ependymin related protein 1 (zebrafish)##NM_017549|EPDR1|54749|ependymin related protein 1 (zebrafish)##BC018299|EPDR1|54749|ependymin related protein 1 (zebrafish)	0.376999	0.0	denovo_WM_7:-30:0.256
chr10	9655458	9655612	reg1009129.p2	4.772	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-1558052	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-1558760	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-1558886	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	1391722	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	1391750	+	AK299548 TSC_hg19_v1_chr10_+_11047339	1391805	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	0.0	0.0	
chr11	62200644	62200713	reg1004565.p1	4.772	+	AK312165 NM_003357 BC004481 U01101 DQ893375 DQ896769 X13197 AB590371 CR541780	-14142	+	TSC_hg19_v1_chr11_+_62104919 AK313069 AK091894 AX747239 AK297158 AK090908 AX746674 AK309845 BC064963 BC093070 AF411076 BC021295 AK225802	-95730	+	NM_001083926 NM_025080 TSC_hg19_v1_chr11_+_62104878	-95853	+	TSC_hg19_v1_chr11_-_62314221 BC012477 BC000926 AK095346	113558	-	TSC_hg19_v1_chr11_-_62314314 AK300376 BC128460 NM_001620 NM_024060	113636	-	DQ185040 BT006677 CR407625 BC006509 BC006520 CU674184 CU677463 CU680700 BC000384 DQ891103 DQ894284 Z11531 AB527934 BC009865 BC015813 BC018857 BC018853 BC028179 TSC_hg19_v1_chr11_-_62341334 BC013918 AK092787 AK299876 AY542307 BC067738 AK129569 AK129618 AK300729 X63526 AK130026 AK300686 BC031012	140646	-	AK312165|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##NM_003357|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC004481|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##U01101|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ893375|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ896769|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##X13197|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##CR541780|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##AK313069|ASRGL1|80150|asparaginase like 1##AK091894|ASRGL1|80150|asparaginase like 1##AK297158|ASRGL1|80150|asparaginase like 1##AK090908|ASRGL1|80150|asparaginase like 1##AK309845|ASRGL1|80150|asparaginase like 1##BC064963|ASRGL1|80150|asparaginase like 1##BC093070|ASRGL1|80150|asparaginase like 1##AF411076|ASRGL1|80150|asparaginase like 1##BC021295|ASRGL1|80150|asparaginase like 1##AK225802|ASRGL1|80150|asparaginase like 1##NM_001083926|ASRGL1|80150|asparaginase like 1##NM_025080|ASRGL1|80150|asparaginase like 1##BC012477|AHNAK|79026|AHNAK nucleoprotein##BC000926|AHNAK|79026|AHNAK nucleoprotein##AK095346|AHNAK|79026|AHNAK nucleoprotein##AK300376|AHNAK|79026|AHNAK nucleoprotein##BC128460|AHNAK|79026|AHNAK nucleoprotein##NM_001620|AHNAK|79026|AHNAK nucleoprotein##NM_024060|AHNAK|79026|AHNAK nucleoprotein##DQ185040|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BT006677|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##CR407625|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006509|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006520|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC000384|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ891103|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ894284|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##Z11531|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC009865|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC015813|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018857|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018853|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC028179|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC013918|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK092787|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK299876|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AY542307|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC067738|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129569|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129618|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300729|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##X63526|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK130026|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300686|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC031012|EEF1G|1937|eukaryotic translation elongation factor 1 gamma	1.195543	0.0	denovo_WM_7:62:0.448	denovo_WM_7:-96:0.259	denovo_WM_7:-97:0.290
chr12	53506379	53506512	reg1012509.p2	4.772	+	TSC_hg19_v1_chr12_+_53497289 AF059203 BC096090 BC096091 BC096092 BC099626 AF099031	-9121	+	NM_003578 TSC_hg19_v1_chr12_+_53497278	-9170	+	M62402 TSC_hg19_v1_chr12_+_53491450 AK313158 BC003507 BC011708 BC005007 DQ892995 DQ896243 AB528507 CR541791 M69054	-14968	+	AB044561 NM_001244706	51831	-	AF116545 AF116546 AF116547 AF116548 BC018042 AK315265 BC047466 NM_015989	67959	-	TSC_hg19_v1_chr12_+_53574505 AK292744	68046	+	AF059203|SOAT2|8435|sterol O-acyltransferase 2##BC096090|SOAT2|8435|sterol O-acyltransferase 2##BC096091|SOAT2|8435|sterol O-acyltransferase 2##BC096092|SOAT2|8435|sterol O-acyltransferase 2##BC099626|SOAT2|8435|sterol O-acyltransferase 2##AF099031|SOAT2|8435|sterol O-acyltransferase 2##NM_003578|SOAT2|8435|sterol O-acyltransferase 2##M62402|IGFBP6|3489|insulin-like growth factor binding protein 6##AK313158|IGFBP6|3489|insulin-like growth factor binding protein 6##BC003507|IGFBP6|3489|insulin-like growth factor binding protein 6##BC011708|IGFBP6|3489|insulin-like growth factor binding protein 6##BC005007|IGFBP6|3489|insulin-like growth factor binding protein 6##DQ892995|IGFBP6|3489|insulin-like growth factor binding protein 6##DQ896243|IGFBP6|3489|insulin-like growth factor binding protein 6##CR541791|IGFBP6|3489|insulin-like growth factor binding protein 6##M69054|IGFBP6|3489|insulin-like growth factor binding protein 6##AB044561|CSAD|51380|cysteine sulfinic acid decarboxylase##NM_001244706|CSAD|51380|cysteine sulfinic acid decarboxylase##AF116545|CSAD|51380|cysteine sulfinic acid decarboxylase##AF116546|CSAD|51380|cysteine sulfinic acid decarboxylase##AF116547|CSAD|51380|cysteine sulfinic acid decarboxylase##AF116548|CSAD|51380|cysteine sulfinic acid decarboxylase##BC018042|CSAD|51380|cysteine sulfinic acid decarboxylase##AK315265|CSAD|51380|cysteine sulfinic acid decarboxylase##BC047466|CSAD|51380|cysteine sulfinic acid decarboxylase##NM_015989|CSAD|51380|cysteine sulfinic acid decarboxylase##AK292744|ZNF740|283337|zinc finger protein 740	1.569744	0.0	denovo_WM_7:-106:0.310	denovo_WM_7:106:0.812	denovo_WM_7:-107:0.310
chr13	28715041	28715188	reg1012767.p1	4.772	+	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	-2448	+	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	-40427	-	NM_001105577	-152341	-	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	354130	-	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	518094	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	518180	+	AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##NM_001105577|PRHOXNB|646625|parahox cluster neighbor##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein	0.999297	0.0	
chr19	45287770	45287950	reg1003682.p1	4.772	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	-6704	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	-35879	+	BC144608 NM_001039213	-85440	+	TSC_hg19_v1_chr19_+_45312359 BC014065 NM_001013257 NM_005581 X83425 BC036745 X80026 BC050450 AB463427 CU690688 HE572749	24496	+	NM_001042724 NM_002856 TSC_hg19_v1_chr19_+_45349482	61582	+	TSC_hg19_v1_chr19_+_45349564 AK291330	61703	+	AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001013257|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_005581|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X83425|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC036745|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##X80026|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##BC050450|BCAM|4059|basal cell adhesion molecule (Lutheran blood group)##NM_001042724|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##NM_002856|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)##AK291330|PVRL2|5819|poliovirus receptor-related 2 (herpesvirus entry mediator B)	0.0	0.980595	CTCF.p2:-50:0.981
chr17	36400695	36400875	reg1010569.p2	4.771	+	BC033670 BC047739 AL136860 AK301823 BC071680 BC078140 AK302064 AK313329 NM_001123391 NM_032258	-52160	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	-116792	+	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	-295734	-	BC067792 TSC_hg19_v1_chr17_-_36413224	12452	-	NM_032351 AK293605 BC130382 BC130384 TSC_hg19_v1_chr17_+_36453120	52269	+	TSC_hg19_v1_chr17_+_36453138 AK172741 AK225031 HQ258365 BC006235	52352	+	BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##AK302064|TBC1D3|729873|TBC1 domain family, member 3##AK313329|TBC1D3|729873|TBC1 domain family, member 3##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##BC067792|LOC440434|440434|aminopeptidase puromycin sensitive pseudogene##NM_032351|MRPL45|84311|mitochondrial ribosomal protein L45##AK293605|MRPL45|84311|mitochondrial ribosomal protein L45##BC130382|MRPL45|84311|mitochondrial ribosomal protein L45##BC130384|MRPL45|84311|mitochondrial ribosomal protein L45##AK172741|MRPL45|84311|mitochondrial ribosomal protein L45##AK225031|MRPL45|84311|mitochondrial ribosomal protein L45##HQ258365|MRPL45|84311|mitochondrial ribosomal protein L45##BC006235|MRPL45|84311|mitochondrial ribosomal protein L45	0.536153	0.0	
chr17	42297857	42298011	reg1009851.p2	4.771	+	TSC_hg19_v1_chr17_-_42297051 NM_001076684 NM_014233	-890	-	X56687 TSC_hg19_v1_chr17_-_42296940	-1002	-	AK291733 TSC_hg19_v1_chr17_-_42296871	-1056	-	TSC_hg19_v1_chr17_-_42298282 BC042297 NM_001076683	345	-	AK292577 TSC_hg19_v1_chr17_-_42298971 AK292518	1003	-	BC050302 TSC_hg19_v1_chr17_+_42299409	1411	+	NM_001076684|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_014233|UBTF|7343|upstream binding transcription factor, RNA polymerase I##X56687|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK291733|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC042297|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076683|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292577|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292518|UBTF|7343|upstream binding transcription factor, RNA polymerase I	0.531074	0.0	denovo_WM_7:-21:0.241
chr2	120763939	120764077	reg1002424.p1	4.771	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	-246608	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	-327227	+	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	-327274	+	TSC_hg19_v1_chr2_+_120770604 NM_001184937 NM_001184939 NM_020909	6595	+	TSC_hg19_v1_chr2_+_120770652 AK023019 BC054508 AK290895 BC032822 NM_001184938	6725	+	TSC_hg19_v1_chr2_-_120980957 BC016849 AK289880 BC080607 AK024632	216929	-	M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##NM_001184937|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184939|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_020909|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK023019|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC054508|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK290895|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC032822|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184938|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC016849|TMEM185B|79134|transmembrane protein 185B##BC080607|TMEM185B|79134|transmembrane protein 185B##AK024632|TMEM185B|79134|transmembrane protein 185B	0.729463	0.0	denovo_WM_7:20:0.528
chr2	234094285	234094465	reg1009744.p1	4.771	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-169259	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-169316	+	BC069151 BC107053 NM_005383	-196994	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	65891	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	65948	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	65982	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	0.998422	0.0	
chr7	5270855	5271000	reg1003454.p5	4.771	+	BC016912 AF151808 NM_001033520 AY691426	-17035	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-40942	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-41012	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	51679	+	TSC_hg19_v1_chr7_-_5460842 BC140723	189979	-	AY129022 TSC_hg19_v1_chr7_-_5461555	190614	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.0	0.0	
chr7	93610143	93610291	reg1010552.p2	4.771	+	NM_004126 BC009709	-59161	+	BC029367 NM_021955	-74398	+	CU675117 DQ892533 DQ895744 L27624 AY691946 D29992 AK075427 AK024817 AK075425 AK092499 AK129833 AK313260 BC005330 NM_006528 TSC_hg19_v1_chr7_-_93520066	-90188	-	BT009853 DQ894078 BC000899 TSC_hg19_v1_chr7_-_93633668 CR749267 AF007551 AK313984 BC012595 NM_005868	23397	-	J03464 NM_000089 X02488	413655	+	TSC_hg19_v1_chr7_+_94024206 AK297786 AK223175 AK300194 Z74616 AK226074 BC042586 BC054498 Y00724 CU691094 AB384984	414054	+	NM_004126|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC009709|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC029367|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##NM_021955|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##DQ892533|TFPI2|7980|tissue factor pathway inhibitor 2##DQ895744|TFPI2|7980|tissue factor pathway inhibitor 2##L27624|TFPI2|7980|tissue factor pathway inhibitor 2##AY691946|TFPI2|7980|tissue factor pathway inhibitor 2##D29992|TFPI2|7980|tissue factor pathway inhibitor 2##AK075427|TFPI2|7980|tissue factor pathway inhibitor 2##AK024817|TFPI2|7980|tissue factor pathway inhibitor 2##AK075425|TFPI2|7980|tissue factor pathway inhibitor 2##AK092499|TFPI2|7980|tissue factor pathway inhibitor 2##AK129833|TFPI2|7980|tissue factor pathway inhibitor 2##AK313260|TFPI2|7980|tissue factor pathway inhibitor 2##BC005330|TFPI2|7980|tissue factor pathway inhibitor 2##NM_006528|TFPI2|7980|tissue factor pathway inhibitor 2##BT009853|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##DQ894078|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##BC000899|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##CR749267|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##AF007551|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##AK313984|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##BC012595|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##NM_005868|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##J03464|COL1A2|1278|collagen, type I, alpha 2##NM_000089|COL1A2|1278|collagen, type I, alpha 2##X02488|COL1A2|1278|collagen, type I, alpha 2##AK297786|COL1A2|1278|collagen, type I, alpha 2##AK223175|COL1A2|1278|collagen, type I, alpha 2##AK300194|COL1A2|1278|collagen, type I, alpha 2##Z74616|COL1A2|1278|collagen, type I, alpha 2##AK226074|COL1A2|1278|collagen, type I, alpha 2##BC042586|COL1A2|1278|collagen, type I, alpha 2##BC054498|COL1A2|1278|collagen, type I, alpha 2##Y00724|COL1A2|1278|collagen, type I, alpha 2	0.218666	0.0	
chr6	160362874	160362991	reg1007978.p2	4.770	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	-34953	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	-141589	+	TSC_hg19_v1_chr6_+_160211500 NM_014161 AF161556 BC001623 AL136633 AK292647 AB528185 AM393775 CR533491	-151382	+	TSC_hg19_v1_chr6_+_160390137 NM_000876 Y00285 J03528	27201	+	NM_003057 NM_153187 X98332 BC126364 AK289887 U77086 AB527951 HQ258293	179982	+	CU689064 BC039899 AK290787 X98333 AB075951 BC030978 NM_003058	316943	-	BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene##AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_014161|MRPL18|29074|mitochondrial ribosomal protein L18##AF161556|MRPL18|29074|mitochondrial ribosomal protein L18##BC001623|MRPL18|29074|mitochondrial ribosomal protein L18##AL136633|MRPL18|29074|mitochondrial ribosomal protein L18##AM393775|MRPL18|29074|mitochondrial ribosomal protein L18##CR533491|MRPL18|29074|mitochondrial ribosomal protein L18##NM_000876|IGF2R|3482|insulin-like growth factor 2 receptor##Y00285|IGF2R|3482|insulin-like growth factor 2 receptor##J03528|IGF2R|3482|insulin-like growth factor 2 receptor##NM_003057|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##NM_153187|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##X98332|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC126364|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##AK289887|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##U77086|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##HQ258293|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC039899|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AK290787|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##X98333|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AB075951|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC030978|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##NM_003058|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2	0.0	0.988852	CTCF.p2:5:0.989
chrX	121405038	121405169	reg1007295.p2	4.770	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-1223663	+	BC029540 NM_001080141 NM_001080146	-1285466	-	BC029540 NM_001080137 NM_001080138 NM_001080139 NM_001080141 NM_001080142 NM_001080143 NM_001080144 NM_001080145 NM_001080146 NM_001242922 NM_173571	-1290326	-	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	913137	+	TSC_hg19_v1_chrX_-_122866885 AK001758	1461780	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	1461794	-	BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080137|CT47A10|728036|cancer/testis antigen family 47, member A10##NM_001080138|CT47A9|728042|cancer/testis antigen family 47, member A9##NM_001080139|CT47A8|728049|cancer/testis antigen family 47, member A8##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080142|CT47A5|728072|cancer/testis antigen family 47, member A5##NM_001080143|CT47A4|728075|cancer/testis antigen family 47, member A4##NM_001080144|CT47A3|728082|cancer/testis antigen family 47, member A3##NM_001080145|CT47A2|728090|cancer/testis antigen family 47, member A2##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##NM_001242922|CT47A12|100507170|cancer/testis antigen family 47, member A12##NM_173571|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2	0.0	0.0	
chr13	23375663	23375772	reg1011660.p1	4.769	+	TSC_hg19_v1_chr13_+_22245083 AK290792 NM_002010	-1130569	+	TSC_hg19_v1_chr13_-_22178356 NM_152726	-1197357	-	TSC_hg19_v1_chr13_-_22178300 CU689110 CU690000 AK091907 AX747248 BC031089 BC034965	-1197408	-	NM_000231 U34976 BC109321 AK290620 AK316579 BC074777 BC074778	379398	+	TSC_hg19_v1_chr13_-_23949652 AK125458	573933	-	TSC_hg19_v1_chr13_-_24007842 NM_014363	632123	-	AK290792|FGF9|2254|fibroblast growth factor 9 (glia-activating factor)##NM_002010|FGF9|2254|fibroblast growth factor 9 (glia-activating factor)##NM_152726|EFHA1|221154|EF-hand domain family, member A1##AK091907|EFHA1|221154|EF-hand domain family, member A1##BC031089|EFHA1|221154|EF-hand domain family, member A1##BC034965|EFHA1|221154|EF-hand domain family, member A1##NM_000231|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##U34976|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC109321|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK290620|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK316579|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074777|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##BC074778|SGCG|6445|sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)##AK125458|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)##NM_014363|SACS|26278|spastic ataxia of Charlevoix-Saguenay (sacsin)	0.327757	0.852092	CTCF.p2:1:0.852
chr19	4379626	4379806	reg1002244.p2	4.769	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-36157	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-36966	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-40918	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	20677	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	20837	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	23000	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.0	0.0	
chr5	89603672	89603785	reg1010465.p1	4.769	+	AL833268 AL833274 NM_001131005 NM_001193347	-1403834	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-1418464	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-1418608	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	101811	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	166454	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	166850	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.995844	0.0	
chr6	99865480	99865613	reg1011458.p1	4.769	+	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	-16255	-	AF193016 BC015634 BC001534 BC063463 CU687730 AB590714 AF351615 AK056955 AL136726 NM_017421	-23493	-	BC004869 BC011583 NM_032511	-68016	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	7268	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	7621	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	97723	-	AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF193016|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC015634|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC001534|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC063463|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AF351615|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AK056955|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##AL136726|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##NM_017421|COQ3|51805|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)##BC004869|C6orf168|84553|chromosome 6 open reading frame 168##BC011583|C6orf168|84553|chromosome 6 open reading frame 168##NM_032511|C6orf168|84553|chromosome 6 open reading frame 168##BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45	0.0	0.0	
chrX	46492553	46492733	reg1002751.p1	4.769	+	NM_019886 BC045537 BC023971 AB040711 AB037187 GQ129386 GQ129387	-59365	+	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	-87699	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	-87787	-	AF298591 NM_032591 TSC_hg19_v1_chrX_-_46618577	125886	-	TSC_hg19_v1_chrX_-_46618608 BC094742	125987	-	NM_006915 AJ007590 TSC_hg19_v1_chrX_+_46696391 BC027851	203734	+	NM_019886|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC045537|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC023971|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB040711|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##AB037187|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129386|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##GQ129387|CHST7|56548|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##AF298591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_032591|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##BC094742|SLC9A7|84679|solute carrier family 9 (sodium/hydrogen exchanger), member 7##NM_006915|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AJ007590|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC027851|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)	0.0	0.0	
chr12	6382143	6382278	reg1009937.p1	4.768	+	TSC_hg19_v1_chr12_+_6309565 NM_001769 AK315219 AK308700 AK296332 AK309527 AY966455 X60111 AK296894 AK298431 BC011988 M38690 AY423720 DQ891314 DQ894498 AB590218 CU680148 L34068	-72640	+	X04385 AK301216 TSC_hg19_v1_chr12_-_6233752 AK292122 M17588 X04146 AK298097 BC022258 NM_000552	-148451	-	AJ272204 NM_020373	-326813	-	AK001527 NM_018173 BC104751 BC105961 BC109095	37423	+	TSC_hg19_v1_chr12_+_6419886 BC040273	37675	+	AK023741 NM_001144856	37888	+	NM_001769|CD9|928|CD9 molecule##AK315219|CD9|928|CD9 molecule##AK308700|CD9|928|CD9 molecule##AK296332|CD9|928|CD9 molecule##AK309527|CD9|928|CD9 molecule##AY966455|CD9|928|CD9 molecule##X60111|CD9|928|CD9 molecule##AK296894|CD9|928|CD9 molecule##AK298431|CD9|928|CD9 molecule##BC011988|CD9|928|CD9 molecule##M38690|CD9|928|CD9 molecule##AY423720|CD9|928|CD9 molecule##DQ891314|CD9|928|CD9 molecule##DQ894498|CD9|928|CD9 molecule##L34068|CD9|928|CD9 molecule##X04385|VWF|7450|von Willebrand factor##AK301216|VWF|7450|von Willebrand factor##AK292122|VWF|7450|von Willebrand factor##M17588|VWF|7450|von Willebrand factor##X04146|VWF|7450|von Willebrand factor##AK298097|VWF|7450|von Willebrand factor##BC022258|VWF|7450|von Willebrand factor##NM_000552|VWF|7450|von Willebrand factor##AJ272204|ANO2|57101|anoctamin 2##NM_020373|ANO2|57101|anoctamin 2##AK001527|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##NM_018173|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC104751|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC105961|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC109095|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##BC040273|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##AK023741|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6##NM_001144856|PLEKHG6|55200|pleckstrin homology domain containing, family G (with RhoGef domain) member 6	0.591523	0.0	denovo_WM_7:22:0.571
chr21	16235280	16235382	reg1010708.p1	4.768	+	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	-316682	-	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-479858	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-646834	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	201886	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	866994	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	867210	+	BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25	0.962078	0.140954	denovo_WM_7:35:0.382	denovo_WM_7:36:0.556
chr2	54905610	54905718	reg1009053.p2	4.768	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-120099	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-221297	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-222052	+	NM_001039753	46484	+	TSC_hg19_v1_chr2_-_55199899 BC131571	294244	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	331708	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	1.61896	0.0	denovo_WM_7:-3:0.514	denovo_WM_7:-21:0.340	denovo_WM_7:-22:0.357	denovo_WM_7:-23:0.267
chr7	73615534	73615632	reg1005356.p2	4.768	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	-26880	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	-26942	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-108066	+	NM_014146 NM_032463 NM_032464	8503	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	8699	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	8753	+	AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2	1.984802	0.0	
chr11	1673992	1674159	reg1011299.p1	4.767	+	AB126074 AJ628247 NM_001001480	-23057	+	AB528165 AB126073 NM_001012709	-30730	-	AY597812 AB528164 AB126072 NM_001012708	-44422	-	AB126075 NM_001012416 BC130399 BC133035	44363	+	TSC_hg19_v1_chr11_-_1769086 AK289574	95065	-	NM_001170820 TSC_hg19_v1_chr11_-_1771824	97749	-	AB126074|KRTAP5-5|439915|keratin associated protein 5-5##AJ628247|KRTAP5-5|439915|keratin associated protein 5-5##NM_001001480|KRTAP5-5|439915|keratin associated protein 5-5##AB126073|KRTAP5-4|387267|keratin associated protein 5-4##NM_001012709|KRTAP5-4|387267|keratin associated protein 5-4##AY597812|KRTAP5-3|387266|keratin associated protein 5-3##AB126072|KRTAP5-3|387266|keratin associated protein 5-3##NM_001012708|KRTAP5-3|387266|keratin associated protein 5-3##AB126075|KRTAP5-6|440023|keratin associated protein 5-6##NM_001012416|KRTAP5-6|440023|keratin associated protein 5-6##BC130399|KRTAP5-6|440023|keratin associated protein 5-6##BC133035|KRTAP5-6|440023|keratin associated protein 5-6##AK289574|IFITM10|402778|interferon induced transmembrane protein 10##NM_001170820|IFITM10|402778|interferon induced transmembrane protein 10	0.350461	0.999621	CTCF.p2:26:1.000	denovo_WM_7:-45:0.318
chr11	66378888	66379058	reg1001859.p1	4.767	+	TSC_hg19_v1_chr11_+_66360672 AY113179 AF002210 NM_005125 BC105016 BC112055 CR541928	-18275	+	CU689898 TSC_hg19_v1_chr11_-_66360516 AK001648 BC034469 NM_018219	-18452	-	DQ893245 AJ007331 TSC_hg19_v1_chr11_-_66336078 AK313657 BC036451 AF136279 BC011682 BC013359 AF088886 NM_003793	-42948	-	NM_001198836 NM_001198837 NM_001198845 NM_001198846 NM_006328 TSC_hg19_v1_chr11_+_66384100 AF315632 AF315633 EU287938 AK222830 AK297907 AK307254 AK021768 AK292805 AF080561 BC000488 BC023619 DQ294957 EU287939 EU446504	5148	+	AB464693 TSC_hg19_v1_chr11_+_66395849	16818	+	NM_001198843 NM_001198844 NM_002896 TSC_hg19_v1_chr11_+_66406176 AK303984 BC021120 AK225071 BC032735	27160	+	AY113179|CCS|9973|copper chaperone for superoxide dismutase##AF002210|CCS|9973|copper chaperone for superoxide dismutase##NM_005125|CCS|9973|copper chaperone for superoxide dismutase##BC105016|CCS|9973|copper chaperone for superoxide dismutase##BC112055|CCS|9973|copper chaperone for superoxide dismutase##CR541928|CCS|9973|copper chaperone for superoxide dismutase##AK001648|CCDC87|55231|coiled-coil domain containing 87##BC034469|CCDC87|55231|coiled-coil domain containing 87##NM_018219|CCDC87|55231|coiled-coil domain containing 87##DQ893245|CTSF|8722|cathepsin F##AJ007331|CTSF|8722|cathepsin F##AK313657|CTSF|8722|cathepsin F##BC036451|CTSF|8722|cathepsin F##AF136279|CTSF|8722|cathepsin F##BC011682|CTSF|8722|cathepsin F##BC013359|CTSF|8722|cathepsin F##AF088886|CTSF|8722|cathepsin F##NM_003793|CTSF|8722|cathepsin F##NM_001198836|RBM14|10432|RNA binding motif protein 14##NM_001198837|RBM14|10432|RNA binding motif protein 14##NM_001198845|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_001198846|RBM14-RBM4|100526737|RBM14-RBM4 readthrough##NM_006328|RBM14|10432|RNA binding motif protein 14##AF315632|RBM14|10432|RNA binding motif protein 14##AF315633|RBM14|10432|RNA binding motif protein 14##AK222830|RBM14|10432|RNA binding motif protein 14##AK021768|RBM14|10432|RNA binding motif protein 14##AF080561|RBM14|10432|RNA binding motif protein 14##BC000488|RBM14|10432|RNA binding motif protein 14##BC023619|RBM14|10432|RNA binding motif protein 14##DQ294957|RBM14|10432|RNA binding motif protein 14##EU446504|RBM14|10432|RNA binding motif protein 14##NM_001198843|RBM4|5936|RNA binding motif protein 4##NM_001198844|RBM4|5936|RNA binding motif protein 4##NM_002896|RBM4|5936|RNA binding motif protein 4##AK303984|RBM4|5936|RNA binding motif protein 4##BC021120|RBM4|5936|RNA binding motif protein 4##AK225071|RBM4|5936|RNA binding motif protein 4##BC032735|RBM4|5936|RNA binding motif protein 4	3.955408	0.0	denovo_WM_7:61:0.495	denovo_WM_7:64:0.311	denovo_WM_7:80:0.709	denovo_WM_7:98:0.365
chr10	11285281	11285459	reg1008056.p1	4.766	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-77878	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-77924	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-77945	+	NM_001080491	288903	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	368266	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	499028	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	0.99897	0.0	denovo_WM_7:-37:0.314	denovo_WM_7:-38:0.314	denovo_WM_7:-39:0.314
chr12	100536931	100537031	reg1006337.p2	4.766	+	TSC_hg19_v1_chr12_-_100536644 NM_001006947 NM_015054	-333	-	BC127017 AK125813 TSC_hg19_v1_chr12_-_100536637 BC014891	-432	-	NM_152788	-158550	-	TSC_hg19_v1_chr12_+_100594593 BC015107 NM_022496 AF161399 AK222959 AB038229 AF212251 BC050679 AK023495 AK023684 AK296991 AF175226 CU677213	57614	+	BC015117 TSC_hg19_v1_chr12_-_100660855 BC039480 AK090824 AX746635 BC100927 BC100928 BC100929 BC100930 NM_152317	123831	-	TSC_hg19_v1_chr12_+_100661023 AK000936 BC011525	124019	+	NM_001006947|UHRF1BP1L|23074|UHRF1 binding protein 1-like##NM_015054|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC127017|UHRF1BP1L|23074|UHRF1 binding protein 1-like##AK125813|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC014891|UHRF1BP1L|23074|UHRF1 binding protein 1-like##NM_152788|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC015107|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##NM_022496|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AF161399|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK222959|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AB038229|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AF212251|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##BC050679|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK023495|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK023684|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK296991|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AF175226|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##BC015117|DEPDC4|120863|DEP domain containing 4##BC039480|DEPDC4|120863|DEP domain containing 4##AK090824|DEPDC4|120863|DEP domain containing 4##BC100927|DEPDC4|120863|DEP domain containing 4##BC100928|DEPDC4|120863|DEP domain containing 4##BC100929|DEPDC4|120863|DEP domain containing 4##BC100930|DEPDC4|120863|DEP domain containing 4##NM_152317|DEPDC4|120863|DEP domain containing 4##AK000936|SCYL2|55681|SCY1-like 2 (S. cerevisiae)##BC011525|SCYL2|55681|SCY1-like 2 (S. cerevisiae)	1.868488	0.597592	denovo_WM_7:-9:0.425	denovo_WM_7:9:0.853	denovo_WM_7:-11:0.230
chr14	64335125	64335207	reg1011548.p1	4.766	+	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	-15471	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-140417	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-226604	-	NM_182913 AY061758 AK297874	345711	+	NM_182910	347505	+	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	414497	-	NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)	0.998706	0.0	denovo_WM_7:33:0.462	denovo_WM_7:34:0.518
chr15	52023814	52023959	reg1012463.p1	4.766	+	AF453583 NM_001165257 NM_013243 AF078851 TSC_hg19_v1_chr15_+_51973699 AY359093 AK075314 AK296466 AK290175	-50255	+	TSC_hg19_v1_chr15_-_51914953 BC140781 BC144539 AF389880 AK000156 NM_001174116 NM_001174117 NM_015263	-108913	-	NM_181789 TSC_hg19_v1_chr15_+_51633764 AK172756	-390092	+	AK129759 DQ892424 DQ895638 TSC_hg19_v1_chr15_-_52029856	5990	-	TSC_hg19_v1_chr15_-_52030323 AY125955 BC033515 NM_153374	6373	-	NM_001143917 TSC_hg19_v1_chr15_-_52043732 BC022075	19829	-	AF453583|SCG3|29106|secretogranin III##NM_001165257|SCG3|29106|secretogranin III##NM_013243|SCG3|29106|secretogranin III##AF078851|SCG3|29106|secretogranin III##AY359093|SCG3|29106|secretogranin III##AK075314|SCG3|29106|secretogranin III##AK296466|SCG3|29106|secretogranin III##AK290175|SCG3|29106|secretogranin III##BC140781|DMXL2|23312|Dmx-like 2##BC144539|DMXL2|23312|Dmx-like 2##AF389880|DMXL2|23312|Dmx-like 2##AK000156|DMXL2|23312|Dmx-like 2##NM_001174116|DMXL2|23312|Dmx-like 2##NM_001174117|DMXL2|23312|Dmx-like 2##NM_015263|DMXL2|23312|Dmx-like 2##NM_181789|GLDN|342035|gliomedin##AK172756|GLDN|342035|gliomedin##AK129759|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##DQ892424|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##DQ895638|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##AY125955|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##BC033515|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##NM_153374|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##NM_001143917|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2##BC022075|LYSMD2|256586|LysM, putative peptidoglycan-binding, domain containing 2	0.607914	0.0	denovo_WM_7:-25:0.277
chr17	17991110	17991247	reg1011808.p2	4.766	+	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	-48371	+	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	-48775	-	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	-114978	+	TSC_hg19_v1_chr17_+_17991289 AK313362 BC062572 BC000493 NM_001388 AK297569 X80754 AK295575 DQ890768 DQ893929 BT006976	90	+	AF144094 NM_016239	20841	+	TSC_hg19_v1_chr17_+_18086815 NM_017758	95661	+	BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AK313362|DRG2|1819|developmentally regulated GTP binding protein 2##BC062572|DRG2|1819|developmentally regulated GTP binding protein 2##BC000493|DRG2|1819|developmentally regulated GTP binding protein 2##NM_001388|DRG2|1819|developmentally regulated GTP binding protein 2##AK297569|DRG2|1819|developmentally regulated GTP binding protein 2##X80754|DRG2|1819|developmentally regulated GTP binding protein 2##AK295575|DRG2|1819|developmentally regulated GTP binding protein 2##DQ890768|DRG2|1819|developmentally regulated GTP binding protein 2##DQ893929|DRG2|1819|developmentally regulated GTP binding protein 2##BT006976|DRG2|1819|developmentally regulated GTP binding protein 2##AF144094|MYO15A|51168|myosin XVA##NM_016239|MYO15A|51168|myosin XVA##NM_017758|ALKBH5|54890|alkB, alkylation repair homolog 5 (E. coli)	0.0	0.0	
chr1	77402424	77402575	reg1010529.p1	4.766	+	TSC_hg19_v1_chr1_+_77333164 AK095758 AK300902 AK295019 BC001201 NM_030965	-69328	+	TSC_hg19_v1_chr1_+_77333125 AK056241	-69372	+	TSC_hg19_v1_chr1_+_77165439 D28460	-237059	+	Y07596 CU676676 AF022913 BC020737 TSC_hg19_v1_chr1_-_77685112 BC026186 AK304340 AK313015 BX648473 NM_005482	282604	-	TSC_hg19_v1_chr1_+_77747603 AF445193 NM_174858	345132	+	TSC_hg19_v1_chr1_+_77747727 BC036666 AK090967 AX746708	345235	+	AK095758|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK300902|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK295019|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##BC001201|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##NM_030965|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK056241|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##D28460|TPI1|7167|triosephosphate isomerase 1##Y07596|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AF022913|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BC020737|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BC026186|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AK304340|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AK313015|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BX648473|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##NM_005482|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AF445193|AK5|26289|adenylate kinase 5##NM_174858|AK5|26289|adenylate kinase 5##BC036666|AK5|26289|adenylate kinase 5##AK090967|AK5|26289|adenylate kinase 5	0.0	0.0	
chr1	229366446	229366557	reg1009735.p1	4.765	+	TSC_hg19_v1_chr1_+_228871199 AB209511 AK289971 BC040076 AF282258 AB074878 AB051826 AF378087	-495202	+	TSC_hg19_v1_chr1_+_228870806 NM_021205 AF211836	-495657	+	AK055963 TSC_hg19_v1_chr1_+_228783500	-583070	+	AK313807 TSC_hg19_v1_chr1_+_229406857 BC004309 NM_004578 AY585832	40384	+	BC002438 TSC_hg19_v1_chr1_+_229407039 AK223009 M28211 AB463206 AF498934 AM392940 AM393585 DQ892636 DQ895874	40549	+	BC107681 NM_006542	73627	+	AB209511|RHOU|58480|ras homolog gene family, member U##AK289971|RHOU|58480|ras homolog gene family, member U##BC040076|RHOU|58480|ras homolog gene family, member U##AF282258|RHOU|58480|ras homolog gene family, member U##AB074878|RHOU|58480|ras homolog gene family, member U##AB051826|RHOU|58480|ras homolog gene family, member U##AF378087|RHOU|58480|ras homolog gene family, member U##NM_021205|RHOU|58480|ras homolog gene family, member U##AF211836|RHOU|58480|ras homolog gene family, member U##AK055963|DUSP5P|574029|dual specificity phosphatase 5 pseudogene##AK313807|RAB4A|5867|RAB4A, member RAS oncogene family##BC004309|RAB4A|5867|RAB4A, member RAS oncogene family##NM_004578|RAB4A|5867|RAB4A, member RAS oncogene family##AY585832|RAB4A|5867|RAB4A, member RAS oncogene family##BC002438|RAB4A|5867|RAB4A, member RAS oncogene family##AK223009|RAB4A|5867|RAB4A, member RAS oncogene family##M28211|RAB4A|5867|RAB4A, member RAS oncogene family##AF498934|RAB4A|5867|RAB4A, member RAS oncogene family##AM392940|RAB4A|5867|RAB4A, member RAS oncogene family##AM393585|RAB4A|5867|RAB4A, member RAS oncogene family##DQ892636|RAB4A|5867|RAB4A, member RAS oncogene family##DQ895874|RAB4A|5867|RAB4A, member RAS oncogene family##BC107681|SPHAR|10638|S-phase response (cyclin related)##NM_006542|SPHAR|10638|S-phase response (cyclin related)	0.0	0.0	
chr16	29801760	29801940	reg1010063.p1	4.765	+	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	-12264	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	-44549	-	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-111368	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	201	+	TSC_hg19_v1_chr16_+_29802074 AK316389 BC028155 BT007259 DQ890771 DQ893652 DQ893932 DQ895829	237	+	FJ532357 TSC_hg19_v1_chr16_+_29817510	15618	+	NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22##AK316389|KIF22|3835|kinesin family member 22##BC028155|KIF22|3835|kinesin family member 22##BT007259|KIF22|3835|kinesin family member 22##DQ890771|KIF22|3835|kinesin family member 22##DQ893652|KIF22|3835|kinesin family member 22##DQ893932|KIF22|3835|kinesin family member 22##DQ895829|KIF22|3835|kinesin family member 22##FJ532357|MAZ|4150|MYC-associated zinc finger protein (purine-binding transcription factor)	0.0	0.0	
chr17	5132538	5132643	reg1011169.p1	4.765	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-37210	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-37417	-	AY143550 NM_004505 X63546 X63547	-100904	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	5511	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	53076	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	190335	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.876746	0.0	denovo_WM_7:95:0.255
chr19	51847918	51848041	reg1010669.p2	4.765	+	BC131493 NM_001163922	-2602	-	TSC_hg19_v1_chr19_+_51815095 NM_001101372	-32881	+	AK097554 NM_173635	-87016	+	TSC_hg19_v1_chr19_-_51858044 AF370381 AK055285 NM_001014763	10089	-	CR456827 TSC_hg19_v1_chr19_-_51869602 AK291881 BC093963 BC093961 X71129	21621	-	TSC_hg19_v1_chr19_-_51869643 NM_001985	21673	-	BC131493|VSIG10L|147645|V-set and immunoglobulin domain containing 10 like##NM_001163922|VSIG10L|147645|V-set and immunoglobulin domain containing 10 like##NM_001101372|IGLON5|402665|IgLON family member 5##AK097554|C19orf75|284369|chromosome 19 open reading frame 75##NM_173635|C19orf75|284369|chromosome 19 open reading frame 75##AF370381|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##AK055285|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##NM_001014763|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##CR456827|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##AK291881|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##BC093963|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##BC093961|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##X71129|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide##NM_001985|ETFB|2109|electron-transfer-flavoprotein, beta polypeptide	0.0	0.0	
chr22	25958113	25958287	reg1011845.p2	4.765	+	TSC_hg19_v1_chr22_+_25844071 BC047380 BC037884	-114124	+	BC139736 NM_001135772	-180657	-	AL137651 NM_182492	-199677	-	TSC_hg19_v1_chr22_+_25960802 BC036797 NM_005160	2599	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	2746	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	179920	+	BC047380|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC037884|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC139736|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##NM_001135772|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##AL137651|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##NM_182492|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##BC036797|ADRBK2|157|adrenergic, beta, receptor kinase 2##NM_005160|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB	0.999622	0.0	
chr3	119042243	119042423	reg1008403.p2	4.765	+	TSC_hg19_v1_chr3_+_119013513 AK293726 BC112163 BC112165 AB384581 HQ258543	-28713	+	TSC_hg19_v1_chr3_+_119013229 AB033030 NM_020754	-29102	+	TSC_hg19_v1_chr3_-_118959726 AK001006 AK301688 AK314425 BX647468 CR749555 NM_003778 NM_212543	-82596	-	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	140136	-	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	145492	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	175140	+	AK293726|ARHGAP31|57514|Rho GTPase activating protein 31##BC112163|ARHGAP31|57514|Rho GTPase activating protein 31##BC112165|ARHGAP31|57514|Rho GTPase activating protein 31##HQ258543|ARHGAP31|57514|Rho GTPase activating protein 31##AB033030|ARHGAP31|57514|Rho GTPase activating protein 31##NM_020754|ARHGAP31|57514|Rho GTPase activating protein 31##AK001006|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK301688|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK314425|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BX647468|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##CR749555|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_003778|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_212543|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1	1.550777	0.0	denovo_WM_7:-1:0.351	denovo_WM_7:20:0.949
chr5	37111698	37111831	reg1001673.p1	4.765	+	TSC_hg19_v1_chr5_+_36876945 BC146821 BX640644 BC131490 AK290347 BX538178 BX538177	-234694	+	TSC_hg19_v1_chr5_+_36876875 NM_015384 NM_133433 AJ627032 AJ640137	-234900	+	TSC_hg19_v1_chr5_-_36876762 AK000901	-235001	-	AK055192 TSC_hg19_v1_chr5_-_37185009	73213	-	TSC_hg19_v1_chr5_-_37249466 NM_023073	137702	-	AB018334 NM_004298	259122	-	BC146821|NIPBL|25836|Nipped-B homolog (Drosophila)##BX640644|NIPBL|25836|Nipped-B homolog (Drosophila)##BC131490|NIPBL|25836|Nipped-B homolog (Drosophila)##AK290347|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538178|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538177|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_015384|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_133433|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ627032|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ640137|NIPBL|25836|Nipped-B homolog (Drosophila)##AK000901|LOC646719|646719|uncharacterized LOC646719##AK055192|C5orf42|65250|chromosome 5 open reading frame 42##NM_023073|C5orf42|65250|chromosome 5 open reading frame 42##AB018334|NUP155|9631|nucleoporin 155kDa##NM_004298|NUP155|9631|nucleoporin 155kDa	0.0	0.0	
chrX	78705795	78705887	reg1011707.p2	4.765	+	AK313154 NM_001171581 NM_004867	-82814	-	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	-83058	-	AF345567 BC104922 BC104924 NM_032553	-279373	+	AK097514 NM_001109878 NM_001109879	564413	+	BC014194 NM_016954 AY035371 AB527983 CU680824	571913	+	AK128147 NM_001170574	885161	+	AK313154|ITM2A|9452|integral membrane protein 2A##NM_001171581|ITM2A|9452|integral membrane protein 2A##NM_004867|ITM2A|9452|integral membrane protein 2A##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A##AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##AK097514|TBX22|50945|T-box 22##NM_001109878|TBX22|50945|T-box 22##NM_001109879|TBX22|50945|T-box 22##BC014194|TBX22|50945|T-box 22##NM_016954|TBX22|50945|T-box 22##AY035371|TBX22|50945|T-box 22##AK128147|FAM46D|169966|family with sequence similarity 46, member D##NM_001170574|FAM46D|169966|family with sequence similarity 46, member D	0.0	0.935118	CTCF.p2:63:0.935
chr14	62137896	62138016	reg1010878.p1	4.764	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-349429	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-389434	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-389762	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	24234	+	FJ790247 NM_001243084	26383	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	91163	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.0	0.0	
chr17	29423037	29423171	reg1008715.p1	4.764	+	TSC_hg19_v1_chr17_+_29421994 AK289936 M82814 M89914 BC144643 D42072	-995	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	-1160	+	TSC_hg19_v1_chr17_+_29298062 AK226030 BC082262 AK312979 AK122646 AK122709 AB470605 AY598332	-124964	+	X51694 BC018050 AK222663 AK312445 NM_002544	201210	-	AK312822 TSC_hg19_v1_chr17_-_29641073	217967	-	TSC_hg19_v1_chr17_-_29641092 BC005926	217985	-	AK289936|NF1|4763|neurofibromin 1##M82814|NF1|4763|neurofibromin 1##M89914|NF1|4763|neurofibromin 1##BC144643|NF1|4763|neurofibromin 1##D42072|NF1|4763|neurofibromin 1##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1##AK226030|RNF135|84282|ring finger protein 135##BC082262|RNF135|84282|ring finger protein 135##AK312979|RNF135|84282|ring finger protein 135##AK122646|RNF135|84282|ring finger protein 135##AK122709|RNF135|84282|ring finger protein 135##AB470605|RNF135|84282|ring finger protein 135##AY598332|RNF135|84282|ring finger protein 135##X51694|OMG|4974|oligodendrocyte myelin glycoprotein##BC018050|OMG|4974|oligodendrocyte myelin glycoprotein##AK222663|OMG|4974|oligodendrocyte myelin glycoprotein##AK312445|OMG|4974|oligodendrocyte myelin glycoprotein##NM_002544|OMG|4974|oligodendrocyte myelin glycoprotein##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B	0.540034	0.0	denovo_WM_7:-25:0.467
chr19	6850046	6850182	reg1010988.p1	4.764	+	TSC_hg19_v1_chr19_+_6772811 AB590871	-77306	+	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	-77390	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-82607	-	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	37483	+	NM_001136507	180479	+	NM_001164419	190069	-	NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001136507|MBD3L5|284428|methyl-CpG binding domain protein 3-like 5##NM_001164419|MBD3L4|653656|methyl-CpG binding domain protein 3-like 4	0.986337	0.0	denovo_WM_7:39:0.459	denovo_WM_7:40:0.267
chr22	24142528	24142708	reg1002476.p4	4.764	+	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	-13369	+	AK075448 AK129792 NM_005940 X57766 BC057788	-27573	+	TSC_hg19_v1_chr22_-_24110129 BC053570 AK289560 BC065232 NM_213720	-32506	-	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	38567	-	AF443201 AJ271290 NM_001024938 NM_030807 AK314502 AK315937 AK075467 AK296169 AK308602 BC063525 BC100807 BC100808 BC100809 BC100810 AK300196 TSC_hg19_v1_chr22_+_24199338	56580	+	NM_001024939 TSC_hg19_v1_chr22_+_24200061 AK304409 AK308589 AK316049 CR456373 AB463269 CU013078 CU013366	57495	+	AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC053570|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK289560|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##BC065232|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##NM_213720|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3##AF443201|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AJ271290|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024938|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_030807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK314502|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK315937|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK075467|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK296169|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308602|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC063525|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100808|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100809|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100810|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK300196|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024939|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK304409|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308589|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK316049|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CR456373|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013078|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013366|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11	0.0	0.0	
chr5	118611499	118611612	reg1007368.p2	4.764	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-7038	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-7097	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-204390	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	80063	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	80183	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	176641	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.0	0.0	
chr10	70813987	70814123	reg1010782.p1	4.763	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-65520	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-98123	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-152938	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	33781	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	33829	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	69836	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	1.990182	0.0	denovo_WM_7:-3:0.449	denovo_WM_7:-4:0.449
chr1	199142552	199142690	reg1005039.p1	4.763	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-236074	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-534291	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-534396	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	854248	+	AK316513 TSC_hg19_v1_chr1_+_200011716	869103	+	NM_001105517	1040034	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.0	0.0	
chr1	234675588	234675704	reg1011110.p1	4.763	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	-60786	-	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	-166274	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-325640	+	TSC_hg19_v1_chr1_-_234743489 BC020516	67880	-	TSC_hg19_v1_chr1_-_234743841 AK299768	68185	-	TSC_hg19_v1_chr1_-_234743861 AK309579	68212	-	NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##BC037878|SLC35F3|148641|solute carrier family 35, member F3##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.0	0.0	
chr9	130746409	130746513	reg1006610.p2	4.763	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-3652	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-33530	-	BC015233 NM_003863	-45699	-	AK122729 NM_197956	83137	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	84022	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	84158	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.0	0.0	
chr18	23651915	23652035	reg1007073.p1	4.762	+	AJ518106 BC032869 TSC_hg19_v1_chr18_-_22932114 AK027354 AK293067 NM_015461	-719812	-	TSC_hg19_v1_chr18_-_22932105 BC113622 BC113648 BC143727	-719938	-	TSC_hg19_v1_chr18_-_22931121 AB385259	-720827	-	AB527567 EU832762 GQ129305 AB300354 AB300355 AB300356 AB300357 AF230662 AF244972 AF257500 AF343880 BC096221 BC096222 BC096223 BC096224 CR542088 CR542103 X79201 TSC_hg19_v1_chr18_-_23670574 AK304305 AK316302 AK316338 AK299082 AK307923 AK289510 NM_001007559 NM_005637 AK301504	18605	-	BC042820 NM_001025096 NM_001025097 NM_144662 BC025393 BC028371 BC028686 BC025389 BC047355 BC021713	61873	+	TSC_hg19_v1_chr18_+_23806444 NM_005640 AB234096	154442	+	AJ518106|ZNF521|25925|zinc finger protein 521##BC032869|ZNF521|25925|zinc finger protein 521##AK027354|ZNF521|25925|zinc finger protein 521##AK293067|ZNF521|25925|zinc finger protein 521##NM_015461|ZNF521|25925|zinc finger protein 521##BC113622|ZNF521|25925|zinc finger protein 521##BC113648|ZNF521|25925|zinc finger protein 521##BC143727|ZNF521|25925|zinc finger protein 521##EU832762|SS18|6760|synovial sarcoma translocation, chromosome 18##GQ129305|SS18|6760|synovial sarcoma translocation, chromosome 18##AF244972|SS18|6760|synovial sarcoma translocation, chromosome 18##AF343880|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096221|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096222|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096223|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096224|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542088|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542103|SS18|6760|synovial sarcoma translocation, chromosome 18##X79201|SS18|6760|synovial sarcoma translocation, chromosome 18##AK304305|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316302|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316338|SS18|6760|synovial sarcoma translocation, chromosome 18##AK299082|SS18|6760|synovial sarcoma translocation, chromosome 18##AK307923|SS18|6760|synovial sarcoma translocation, chromosome 18##AK289510|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_001007559|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_005637|SS18|6760|synovial sarcoma translocation, chromosome 18##AK301504|SS18|6760|synovial sarcoma translocation, chromosome 18##BC042820|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025096|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025097|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_144662|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025393|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028371|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028686|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025389|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC047355|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC021713|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_005640|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AB234096|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa	0.0	0.0	
chr17	30240690	30240820	reg1012964.p1	4.761	+	TSC_hg19_v1_chr17_-_30228769 AK299806	-11991	-	TSC_hg19_v1_chr17_-_30228739 AK315929 AF334386 NM_018428	-12024	-	BC015454 AB527664 TSC_hg19_v1_chr17_-_30228686 AK057202 BC035325 AK225448 AF244135	-12089	-	TSC_hg19_v1_chr17_+_30264046 NM_015355	23288	+	TSC_hg19_v1_chr17_+_30264057 AK290014	23302	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	23320	+	AK299806|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK315929|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF334386|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_018428|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC015454|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK057202|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##BC035325|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AK225448|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##AF244135|UTP6|55813|UTP6, small subunit (SSU) processome component, homolog (yeast)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)	0.993338	0.0	denovo_WM_7:-59:0.813
chr17	57286633	57286813	reg1004163.p1	4.761	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	-53603	+	NM_018304	-53864	+	NM_001100595 NM_182620	-53924	-	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	674	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	11175	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	122295	+	AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11##NM_018304|PRR11|55771|proline rich 11##NM_001100595|SKA2|348235|spindle and kinetochore associated complex subunit 2##NM_182620|SKA2|348235|spindle and kinetochore associated complex subunit 2##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)	0.9975	0.0	denovo_WM_7:18:0.884
chr17_ctg5_hap1	1373167	1373347	reg1011905.p2	4.761	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr18	31702805	31702985	reg1012974.p1	4.761	+	AK296539 NM_001198549	-74329	-	AB051500 TSC_hg19_v1_chr18_+_31319257	-383689	+	NM_030632 AK131454	-544336	+	NM_001198547	99538	-	AK297185 BC000313 TSC_hg19_v1_chr18_-_31803319	100348	-	AB017800 NM_001198546 NM_001198548 NM_003787	100619	-	AK296539|NOL4|8715|nucleolar protein 4##NM_001198549|NOL4|8715|nucleolar protein 4##AB051500|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_030632|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK131454|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_001198547|NOL4|8715|nucleolar protein 4##AK297185|NOL4|8715|nucleolar protein 4##BC000313|NOL4|8715|nucleolar protein 4##AB017800|NOL4|8715|nucleolar protein 4##NM_001198546|NOL4|8715|nucleolar protein 4##NM_001198548|NOL4|8715|nucleolar protein 4##NM_003787|NOL4|8715|nucleolar protein 4	0.96143	0.649098	CTCF.p2:12:0.576	denovo_WM_7:-105:0.834
chr2	122313477	122313558	reg1006582.p1	4.761	+	AK297259 TSC_hg19_v1_chr2_-_122247924	-65598	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-154362	-	TSC_hg19_v1_chr2_-_122042779 AF198488 BC064698 AL137740 NM_014553	-270744	-	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	93505	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	94128	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	180948	-	AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##AF198488|TFCP2L1|29842|transcription factor CP2-like 1##BC064698|TFCP2L1|29842|transcription factor CP2-like 1##AL137740|TFCP2L1|29842|transcription factor CP2-like 1##NM_014553|TFCP2L1|29842|transcription factor CP2-like 1##BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein	2.247022	0.0	denovo_WM_7:-85:0.213
chr3	56715145	56715265	reg1009628.p2	4.761	+	BC029354 NM_015224	-17132	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-123959	+	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	-124003	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	2002	-	AK293864 AB209661 NM_001128616	94464	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	120706	-	BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3	1.033506	0.0	
chr6	161657315	161657445	reg1009207.p2	4.761	+	AK094629 TSC_hg19_v1_chr6_-_161413451	-243967	-	TSC_hg19_v1_chr6_+_161412887 BC136276 BC143735 BC143743 BC143750 AK307866	-244522	+	TSC_hg19_v1_chr6_+_161412815 AF002715 NM_005922 NM_006724	-244566	+	TSC_hg19_v1_chr6_-_161695027 AK295826 AF156776 AY358506 BC020209 AK295548 AK295025 CR627395 AJ420473 AK299721 AK074208 AK297636 NM_020133	37680	-	AK057286 NM_001080378 NM_152410 BC044227	1490789	+	GU345838 GU345839 GU345840 GU361466 GU361467 GU361468 GU361469 GU361470 TSC_hg19_v1_chr6_-_163148736	1491347	-	BC136276|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143735|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143743|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##BC143750|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AK307866|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AF002715|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##NM_005922|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##NM_006724|MAP3K4|4216|mitogen-activated protein kinase kinase kinase 4##AK295826|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AF156776|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AY358506|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##BC020209|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK295548|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK295025|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##CR627395|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AJ420473|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK299721|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK074208|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK297636|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##NM_020133|AGPAT4|56895|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)##AK057286|PACRG|135138|PARK2 co-regulated##NM_001080378|PACRG|135138|PARK2 co-regulated##NM_152410|PACRG|135138|PARK2 co-regulated##BC044227|PACRG|135138|PARK2 co-regulated##GU345838|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU345839|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU345840|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361466|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361467|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361468|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361469|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)##GU361470|PARK2|5071|parkinson protein 2, E3 ubiquitin protein ligase (parkin)	0.343746	0.0	
chr9	140180782	140180894	reg1008760.p1	4.761	+	TSC_hg19_v1_chr9_+_140172277 AK000252 NM_017723	-8553	+	TSC_hg19_v1_chr9_+_140149888 AF464935 AB384577 AM393289	-30915	+	TSC_hg19_v1_chr9_+_140149768 BC019029	-31039	+	BC053618 NM_001004354 TSC_hg19_v1_chr9_-_140196724	15882	-	BC065002 TSC_hg19_v1_chr9_-_140317615 BC110879 AK000440 AK094438 BC039252 BC037355	136772	-	TSC_hg19_v1_chr9_-_140317652 BC033079 BC069205	136838	-	AK000252|C9orf167|54863|chromosome 9 open reading frame 167##NM_017723|C9orf167|54863|chromosome 9 open reading frame 167##AF464935|COBRA1|25920|cofactor of BRCA1##AM393289|COBRA1|25920|cofactor of BRCA1##BC019029|COBRA1|25920|cofactor of BRCA1##BC053618|NRARP|441478|NOTCH-regulated ankyrin repeat protein##NM_001004354|NRARP|441478|NOTCH-regulated ankyrin repeat protein##BC065002|EXD3|54932|exonuclease 3'-5' domain containing 3##BC110879|EXD3|54932|exonuclease 3'-5' domain containing 3##AK000440|EXD3|54932|exonuclease 3'-5' domain containing 3##AK094438|EXD3|54932|exonuclease 3'-5' domain containing 3##BC039252|EXD3|54932|exonuclease 3'-5' domain containing 3##BC037355|EXD3|54932|exonuclease 3'-5' domain containing 3##BC033079|EXD3|54932|exonuclease 3'-5' domain containing 3##BC069205|EXD3|54932|exonuclease 3'-5' domain containing 3	0.084065	0.0	
chr9	35627749	35627857	reg1010135.p1	4.761	+	CU688854 BC011734 BC030227 AK309268 AK307305 AK310093 AK310685 M54992 AF283777 NM_001782	-9442	-	DQ893327 DQ896643 BC037561 AK298907 TSC_hg19_v1_chr9_+_35605808	-22092	+	TSC_hg19_v1_chr9_+_35605468 BC011799	-22319	+	TSC_hg19_v1_chr9_-_35646809 DQ174771 AK311283	19024	-	AB527705 TSC_hg19_v1_chr9_-_35650929 AK314758 AJ010059 BC102029 BC104491 BC107484 NM_014450	23096	-	TSC_hg19_v1_chr9_+_35658298 NM_001195200 NM_001195201 NM_001195217 NM_174923 AK075523	30483	+	BC011734|CD72|971|CD72 molecule##BC030227|CD72|971|CD72 molecule##AK309268|CD72|971|CD72 molecule##AK307305|CD72|971|CD72 molecule##AK310093|CD72|971|CD72 molecule##AK310685|CD72|971|CD72 molecule##M54992|CD72|971|CD72 molecule##AF283777|CD72|971|CD72 molecule##NM_001782|CD72|971|CD72 molecule##DQ893327|TESK1|7016|testis-specific kinase 1##DQ896643|TESK1|7016|testis-specific kinase 1##BC037561|TESK1|7016|testis-specific kinase 1##AK298907|TESK1|7016|testis-specific kinase 1##BC011799|TESK1|7016|testis-specific kinase 1##DQ174771|CD72|971|CD72 molecule##AK311283|CD72|971|CD72 molecule##AK314758|SIT1|27240|signaling threshold regulating transmembrane adaptor 1##AJ010059|SIT1|27240|signaling threshold regulating transmembrane adaptor 1##BC102029|SIT1|27240|signaling threshold regulating transmembrane adaptor 1##BC104491|SIT1|27240|signaling threshold regulating transmembrane adaptor 1##BC107484|SIT1|27240|signaling threshold regulating transmembrane adaptor 1##NM_014450|SIT1|27240|signaling threshold regulating transmembrane adaptor 1##NM_001195200|CCDC107|203260|coiled-coil domain containing 107##NM_001195201|CCDC107|203260|coiled-coil domain containing 107##NM_001195217|CCDC107|203260|coiled-coil domain containing 107##NM_174923|CCDC107|203260|coiled-coil domain containing 107##AK075523|CCDC107|203260|coiled-coil domain containing 107	0.999229	0.0	denovo_WM_7:33:0.739
chr1	155881393	155881520	reg1011418.p1	4.760	+	TSC_hg19_v1_chr1_-_155881164 AK314239 NM_006912 AK298768	-272	-	BC104186 BC104187 AF084462 U71203 U78165 Y07566 TSC_hg19_v1_chr1_-_155881141	-352	-	TSC_hg19_v1_chr1_+_155853548 AK026178	-27883	+	TSC_hg19_v1_chr1_-_155904168 AY112680 AY112681 AY112682	22699	-	TSC_hg19_v1_chr1_-_155904178 AK289902	22721	-	TSC_hg19_v1_chr1_-_155904186 BC062637 NM_014949	22730	-	AK314239|RIT1|6016|Ras-like without CAAX 1##NM_006912|RIT1|6016|Ras-like without CAAX 1##AK298768|RIT1|6016|Ras-like without CAAX 1##BC104186|RIT1|6016|Ras-like without CAAX 1##BC104187|RIT1|6016|Ras-like without CAAX 1##AF084462|RIT1|6016|Ras-like without CAAX 1##U71203|RIT1|6016|Ras-like without CAAX 1##U78165|RIT1|6016|Ras-like without CAAX 1##Y07566|RIT1|6016|Ras-like without CAAX 1##AK026178|SYT11|23208|synaptotagmin XI##AY112680|KIAA0907|22889|KIAA0907##AY112681|KIAA0907|22889|KIAA0907##AY112682|KIAA0907|22889|KIAA0907##AK289902|KIAA0907|22889|KIAA0907##BC062637|KIAA0907|22889|KIAA0907##NM_014949|KIAA0907|22889|KIAA0907	0.161203	0.0	
chr14	100952349	100952454	reg1009377.p1	4.760	+	TSC_hg19_v1_chr14_+_100842812 NM_001161476 BX248767 AK291960 NM_024515 BC067872 AY295082	-109563	+	TSC_hg19_v1_chr14_-_100842681 NM_173701 NM_213645	-109721	-	TSC_hg19_v1_chr14_-_100842665 AK291141	-109748	-	AB527893 CU678064 EU832622 EU832695 NM_001159531	81932	-	BC002607 NM_020836	83729	-	TSC_hg19_v1_chr14_+_101193228 NM_003836 AK289384 AK297918 AK313258 BC007741 BC014015	240822	+	NM_001161476|WDR25|79446|WD repeat domain 25##BX248767|WDR25|79446|WD repeat domain 25##AK291960|WDR25|79446|WD repeat domain 25##NM_024515|WDR25|79446|WD repeat domain 25##BC067872|WDR25|79446|WD repeat domain 25##AY295082|WDR25|79446|WD repeat domain 25##NM_173701|WARS|7453|tryptophanyl-tRNA synthetase##NM_213645|WARS|7453|tryptophanyl-tRNA synthetase##AK291141|WARS|7453|tryptophanyl-tRNA synthetase##EU832622|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##EU832695|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_001159531|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##BC002607|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_020836|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_003836|DLK1|8788|delta-like 1 homolog (Drosophila)##AK289384|DLK1|8788|delta-like 1 homolog (Drosophila)##AK297918|DLK1|8788|delta-like 1 homolog (Drosophila)##AK313258|DLK1|8788|delta-like 1 homolog (Drosophila)##BC007741|DLK1|8788|delta-like 1 homolog (Drosophila)##BC014015|DLK1|8788|delta-like 1 homolog (Drosophila)	0.872658	0.0	denovo_WM_7:-8:0.540	denovo_WM_7:-9:0.257
chr16	3676175	3676301	reg1013937.p1	4.760	+	TSC_hg19_v1_chr16_-_3661587 NM_032444 AK122775	-14655	-	TSC_hg19_v1_chr16_-_3627397 AY601811 NM_178844 AK090431 AK090476	-48839	-	AK023359 NM_024793	-116345	+	NM_005223	26701	+	TSC_hg19_v1_chr16_-_3767521 U12595 BC001455 AF043254 AB528744 CU676340 DQ893476 DQ896346 BC000406 BC002994 AF154108 AK299127 BC018950 AK223049 AK223076 AK223205 BC023585 AK093344 NM_016292	91297	-	TSC_hg19_v1_chr16_-_3843474 AK304771	167288	-	NM_032444|SLX4|84464|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)##AK122775|SLX4|84464|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)##AY601811|NLRC3|197358|NLR family, CARD domain containing 3##NM_178844|NLRC3|197358|NLR family, CARD domain containing 3##AK090431|NLRC3|197358|NLR family, CARD domain containing 3##AK090476|NLRC3|197358|NLR family, CARD domain containing 3##AK023359|CLUAP1|23059|clusterin associated protein 1##NM_024793|CLUAP1|23059|clusterin associated protein 1##NM_005223|DNASE1|1773|deoxyribonuclease I##U12595|TRAP1|10131|TNF receptor-associated protein 1##BC001455|TRAP1|10131|TNF receptor-associated protein 1##AF043254|TRAP1|10131|TNF receptor-associated protein 1##DQ893476|TRAP1|10131|TNF receptor-associated protein 1##DQ896346|TRAP1|10131|TNF receptor-associated protein 1##BC000406|TRAP1|10131|TNF receptor-associated protein 1##BC002994|TRAP1|10131|TNF receptor-associated protein 1##AF154108|TRAP1|10131|TNF receptor-associated protein 1##AK299127|TRAP1|10131|TNF receptor-associated protein 1##BC018950|TRAP1|10131|TNF receptor-associated protein 1##AK223049|TRAP1|10131|TNF receptor-associated protein 1##AK223076|TRAP1|10131|TNF receptor-associated protein 1##AK223205|TRAP1|10131|TNF receptor-associated protein 1##BC023585|TRAP1|10131|TNF receptor-associated protein 1##AK093344|TRAP1|10131|TNF receptor-associated protein 1##NM_016292|TRAP1|10131|TNF receptor-associated protein 1##AK304771|CREBBP|1387|CREB binding protein	0.995726	0.0	denovo_WM_7:-28:0.272	denovo_WM_7:-29:0.470
chr16	62726866	62727015	reg1011552.p2	4.760	+	AK124734 NM_001796	-656202	-	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-3958743	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-4008284	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	2428962	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	2429028	-	TSC_hg19_v1_chr16_-_65155987 AK297377	2429054	-	AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK297377|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	0.469453	0.0	denovo_WM_7:79:0.237
chr19	41915621	41915756	reg1011082.p2	4.760	+	TSC_hg19_v1_chr19_+_41903725 AK313300 AK298188 BC007878 BC008933 AB209828 J04474	-11956	+	TSC_hg19_v1_chr19_+_41903722 AL833143 BC023983 Z14093	-11968	+	NM_000709 NM_001164783 TSC_hg19_v1_chr19_+_41903714	-11984	+	TSC_hg19_v1_chr19_-_41933283 BC128258 BC128410	17670	-	AY277592 NM_198540	18946	-	AK123631 AK293132 AK301940 AK294249 NM_001167867 NM_001167868	29772	-	AK313300|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AK298188|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC007878|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC008933|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AB209828|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##J04474|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AL833143|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC023983|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##Z14093|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##NM_000709|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##NM_001164783|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AY277592|B3GNT8|374907|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8##NM_198540|B3GNT8|374907|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8##AK123631|ATP5SL|55101|ATP5S-like##AK293132|ATP5SL|55101|ATP5S-like##AK301940|ATP5SL|55101|ATP5S-like##AK294249|ATP5SL|55101|ATP5S-like##NM_001167867|ATP5SL|55101|ATP5S-like##NM_001167868|ATP5SL|55101|ATP5S-like	0.997236	0.0	
chr8	100141611	100141709	reg1009944.p1	4.760	+	TSC_hg19_v1_chr8_+_100025537 BC094749	-116070	+	AJ608772 AJ608773 TSC_hg19_v1_chr8_+_100025501	-116148	+	AY223814 AY223815 AY223816 AY223817 AY223818 NM_015243 NM_017890 NM_152564 NM_181661 TSC_hg19_v1_chr8_+_100025498	-116165	+	TSC_hg19_v1_chr8_-_100905892 X13238	764219	-	TSC_hg19_v1_chr8_-_100905910 AK311791	764261	-	NM_004374	764581	-	BC094749|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608772|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608773|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223814|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223815|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223816|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223817|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223818|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_015243|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_017890|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_152564|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_181661|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##X13238|COX6C|1345|cytochrome c oxidase subunit VIc##AK311791|COX6C|1345|cytochrome c oxidase subunit VIc##NM_004374|COX6C|1345|cytochrome c oxidase subunit VIc	0.0	0.0	
chr1	54738751	54738889	reg1011549.p1	4.759	+	TSC_hg19_v1_chr1_+_54665866 AF151069 AF325707 AY421759 BC000041 CU674006	-72930	+	TSC_hg19_v1_chr1_+_54665855 AK026171	-72967	+	AK024572 NM_016491 TSC_hg19_v1_chr1_+_54665839	-72978	+	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	132968	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	133202	-	TSC_hg19_v1_chr1_-_54872087 NM_001009955	133264	-	AF151069|MRPL37|51253|mitochondrial ribosomal protein L37##AF325707|MRPL37|51253|mitochondrial ribosomal protein L37##AY421759|MRPL37|51253|mitochondrial ribosomal protein L37##BC000041|MRPL37|51253|mitochondrial ribosomal protein L37##AK026171|MRPL37|51253|mitochondrial ribosomal protein L37##AK024572|MRPL37|51253|mitochondrial ribosomal protein L37##NM_016491|MRPL37|51253|mitochondrial ribosomal protein L37##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##NM_001009955|SSBP3|23648|single stranded DNA binding protein 3	0.0	0.0	
chr1	234908537	234908717	reg1002387.p4	4.758	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-12853	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-163381	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-164769	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	383462	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	383604	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	415936	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.998068	0.0	denovo_WM_7:-43:0.238	denovo_WM_7:-46:0.376
chr16	18781960	18782092	reg1009769.p1	4.758	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	-208635	-	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-1217221	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-2455496	+	TSC_hg19_v1_chr16_-_18798077 AK127316	16070	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	19629	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	30756	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1	1.022396	0.0	denovo_WM_7:-52:0.841
chr19	14193576	14193694	reg1007953.p1	4.758	+	NM_001145028	-23665	-	TSC_hg19_v1_chr19_+_14142622 BC028003 DQ891051 DQ894230 CU688366	-50988	+	AF265242 AY358876 TSC_hg19_v1_chr19_+_14142572	-51050	+	TSC_hg19_v1_chr19_-_14201272 AY453840 NM_138352	7641	-	TSC_hg19_v1_chr19_-_14224999 AF208004 AF224718 NM_207518 AK292284 AF239744	31419	-	AB528630 X07767 TSC_hg19_v1_chr19_-_14228549 BC039846 BC108259 NM_002730	34825	-	NM_001145028|PALM3|342979|paralemmin 3##BC028003|IL27RA|9466|interleukin 27 receptor, alpha##DQ891051|IL27RA|9466|interleukin 27 receptor, alpha##DQ894230|IL27RA|9466|interleukin 27 receptor, alpha##AF265242|IL27RA|9466|interleukin 27 receptor, alpha##AY358876|IL27RA|9466|interleukin 27 receptor, alpha##AY453840|SAMD1|90378|sterile alpha motif domain containing 1##NM_138352|SAMD1|90378|sterile alpha motif domain containing 1##AF208004|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF224718|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_207518|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AK292284|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##AF239744|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##X07767|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC039846|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##BC108259|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha##NM_002730|PRKACA|5566|protein kinase, cAMP-dependent, catalytic, alpha	0.996726	0.0	denovo_WM_7:33:0.527	denovo_WM_7:34:0.470
chr20	5073573	5073753	reg1011409.p2	4.758	+	BC013112 AF164142 NM_203327	-82738	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-91503	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-269469	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	19952	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	26892	-	AK300558 AK311014 NM_002592	33563	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.0	0.0	
chr8	20402558	20402649	reg1010803.p1	4.758	+	AF123652 AF123654 AF123655 AF123656 AF123657 AF123658 EU446940 BC075006 BC075007 AF123659 NM_021020	-289857	-	TSC_hg19_v1_chr8_+_20054905 X62949 BC003100 AK298819 AB208806 L35249 CU688958 DQ891837 DQ895023 BC007309	-347681	+	TSC_hg19_v1_chr8_+_20054891 AK294163 BC030640 AK312372	-347710	+	AY326396 AY941828 U93703 AB529071 CU692022 AF002700 BC033096 TSC_hg19_v1_chr8_-_21645836 AK299623 U97145	1243189	-	TSC_hg19_v1_chr8_-_21646372 BC041688 NM_001165038 NM_001165039 NM_001495	1243763	-	AB528923 AF034970 CU689448 DQ890550 DQ896808 AK292126 BC032623 AK226110 AK296671 TSC_hg19_v1_chr8_-_21771202 NM_003974	1368562	-	AF123652|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123654|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123655|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123656|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123657|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123658|LZTS1|11178|leucine zipper, putative tumor suppressor 1##EU446940|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075006|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075007|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123659|LZTS1|11178|leucine zipper, putative tumor suppressor 1##NM_021020|LZTS1|11178|leucine zipper, putative tumor suppressor 1##X62949|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC003100|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK298819|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AB208806|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##L35249|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ891837|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ895023|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC007309|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK294163|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC030640|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK312372|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AY326396|GFRA2|2675|GDNF family receptor alpha 2##AY941828|GFRA2|2675|GDNF family receptor alpha 2##U93703|GFRA2|2675|GDNF family receptor alpha 2##AF002700|GFRA2|2675|GDNF family receptor alpha 2##AK299623|GFRA2|2675|GDNF family receptor alpha 2##U97145|GFRA2|2675|GDNF family receptor alpha 2##BC041688|GFRA2|2675|GDNF family receptor alpha 2##NM_001165038|GFRA2|2675|GDNF family receptor alpha 2##NM_001165039|GFRA2|2675|GDNF family receptor alpha 2##NM_001495|GFRA2|2675|GDNF family receptor alpha 2##AF034970|DOK2|9046|docking protein 2, 56kDa##DQ890550|DOK2|9046|docking protein 2, 56kDa##DQ896808|DOK2|9046|docking protein 2, 56kDa##AK292126|DOK2|9046|docking protein 2, 56kDa##BC032623|DOK2|9046|docking protein 2, 56kDa##AK226110|DOK2|9046|docking protein 2, 56kDa##AK296671|DOK2|9046|docking protein 2, 56kDa##NM_003974|DOK2|9046|docking protein 2, 56kDa	2.98844	0.0	denovo_WM_7:68:0.483	denovo_WM_7:69:0.242	denovo_WM_7:83:0.295	denovo_WM_7:84:0.357	denovo_WM_7:85:0.260	denovo_WM_7:99:0.297	denovo_WM_7:100:0.556
chr9	14706632	14706760	reg1009299.p1	4.758	+	TSC_hg19_v1_chr9_-_14693475 BC042558 NM_178566	-13227	-	AF161360 TSC_hg19_v1_chr9_-_14693311 AK292960	-13376	-	AK131233 NM_001190738	-307715	-	AF400435 BC069371 BC069405 BC069491 BC069503 BC103976 BC103977 CU686794 CU686860 NM_005454	15995	-	BC031064 NM_001177704	72834	-	AB160987 TSC_hg19_v1_chr9_-_14869016	162303	-	BC042558|ZDHHC21|340481|zinc finger, DHHC-type containing 21##NM_178566|ZDHHC21|340481|zinc finger, DHHC-type containing 21##AF161360|ZDHHC21|340481|zinc finger, DHHC-type containing 21##AK292960|ZDHHC21|340481|zinc finger, DHHC-type containing 21##AK131233|NFIB|4781|nuclear factor I/B##NM_001190738|NFIB|4781|nuclear factor I/B##AF400435|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069371|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069405|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069491|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069503|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC103976|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC103977|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##NM_005454|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC031064|FREM1|158326|FRAS1 related extracellular matrix 1##NM_001177704|FREM1|158326|FRAS1 related extracellular matrix 1##AB160987|FREM1|158326|FRAS1 related extracellular matrix 1	1.026336	0.0	denovo_WM_7:-42:0.334	denovo_WM_7:-43:0.216	denovo_WM_7:-45:0.334
chrX	38734766	38734906	reg1007909.p1	4.758	+	TSC_hg19_v1_chrX_+_38663536 AK001248	-71296	+	TSC_hg19_v1_chrX_+_38663455 AJ272057	-71376	+	BC008908 NM_021242	-71764	+	AF317391 AF317392 AY316592 TSC_hg19_v1_chrX_-_39956720 NM_001123385 NM_017745	1221856	-	BC114220 NM_001123383 NM_001123384	1301745	-	AK297760 AK075382 TSC_hg19_v1_chrX_+_40440221 AF248966 AY038990 NM_005765 AK296614	1705350	+	AK001248|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AJ272057|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##BC008908|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##NM_021242|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AF317391|BCOR|54880|BCL6 corepressor##AF317392|BCOR|54880|BCL6 corepressor##AY316592|BCOR|54880|BCL6 corepressor##NM_001123385|BCOR|54880|BCL6 corepressor##NM_017745|BCOR|54880|BCL6 corepressor##BC114220|BCOR|54880|BCL6 corepressor##NM_001123383|BCOR|54880|BCL6 corepressor##NM_001123384|BCOR|54880|BCL6 corepressor##AK297760|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK075382|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF248966|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AY038990|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##NM_005765|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK296614|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2	0.985386	0.0	denovo_WM_7:-49:0.748	denovo_WM_7:-50:0.215
chr1	11026261	11026416	reg1003980.p3	4.757	+	DQ217660 AK092289 AX747454 NM_001079843 NM_017766	-169633	-	TSC_hg19_v1_chr1_-_10754567 AK311700 AK293839	-271787	-	TSC_hg19_v1_chr1_+_10535017 AK293684 AK307416 NM_004565 AK298136 AK002194 BC006327 AK310726 BC017848 BC054017 AB017546 AF045186 AK313046 AB527589 CR450321 CR542083 CU675355 DQ892775 DQ895905	-491327	+	NM_001170754	15755	-	NM_007375 TSC_hg19_v1_chr1_+_11072715 AK299454 AK312416 BC001487 BC095435 BC071657 AL050265 AK222754 AK295920	46372	+	Y18282 TSC_hg19_v1_chr1_-_11107270 Y18283 X98400 Y09926 BC052299 BC067359 BC080556 Y18281 Y18284 AB008047	80881	-	DQ217660|CASZ1|54897|castor zinc finger 1##AK092289|CASZ1|54897|castor zinc finger 1##NM_001079843|CASZ1|54897|castor zinc finger 1##NM_017766|CASZ1|54897|castor zinc finger 1##AK311700|CASZ1|54897|castor zinc finger 1##AK293839|CASZ1|54897|castor zinc finger 1##AK293684|PEX14|5195|peroxisomal biogenesis factor 14##AK307416|PEX14|5195|peroxisomal biogenesis factor 14##NM_004565|PEX14|5195|peroxisomal biogenesis factor 14##AK298136|PEX14|5195|peroxisomal biogenesis factor 14##AK002194|PEX14|5195|peroxisomal biogenesis factor 14##BC006327|PEX14|5195|peroxisomal biogenesis factor 14##AK310726|PEX14|5195|peroxisomal biogenesis factor 14##BC017848|PEX14|5195|peroxisomal biogenesis factor 14##BC054017|PEX14|5195|peroxisomal biogenesis factor 14##AB017546|PEX14|5195|peroxisomal biogenesis factor 14##AF045186|PEX14|5195|peroxisomal biogenesis factor 14##AK313046|PEX14|5195|peroxisomal biogenesis factor 14##CR450321|PEX14|5195|peroxisomal biogenesis factor 14##CR542083|PEX14|5195|peroxisomal biogenesis factor 14##DQ892775|PEX14|5195|peroxisomal biogenesis factor 14##DQ895905|PEX14|5195|peroxisomal biogenesis factor 14##NM_001170754|C1orf127|148345|chromosome 1 open reading frame 127##NM_007375|TARDBP|23435|TAR DNA binding protein##AK299454|TARDBP|23435|TAR DNA binding protein##AK312416|TARDBP|23435|TAR DNA binding protein##BC001487|TARDBP|23435|TAR DNA binding protein##BC095435|TARDBP|23435|TAR DNA binding protein##BC071657|TARDBP|23435|TAR DNA binding protein##AL050265|TARDBP|23435|TAR DNA binding protein##AK222754|TARDBP|23435|TAR DNA binding protein##AK295920|TARDBP|23435|TAR DNA binding protein##Y18282|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18283|MASP2|10747|mannan-binding lectin serine peptidase 2##X98400|MASP2|10747|mannan-binding lectin serine peptidase 2##Y09926|MASP2|10747|mannan-binding lectin serine peptidase 2##BC052299|MASP2|10747|mannan-binding lectin serine peptidase 2##BC067359|MASP2|10747|mannan-binding lectin serine peptidase 2##BC080556|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18281|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18284|MASP2|10747|mannan-binding lectin serine peptidase 2##AB008047|MASP2|10747|mannan-binding lectin serine peptidase 2	0.994041	0.0	denovo_WM_7:50:0.245	denovo_WM_7:51:0.286	denovo_WM_7:54:0.429
chr11	59581442	59581593	reg1012583.p1	4.757	+	CR457117 CU674518 TSC_hg19_v1_chr11_-_59578247 BC001040 BC019269 AB049642 AK000491 AF183428 NM_017840	-3280	-	TSC_hg19_v1_chr11_+_59522917 AK312909 AK297419 AK290251 U32315 CU675647 HQ447354 AB464272 AJ002076 BT006666	-58526	+	TSC_hg19_v1_chr11_+_59522849 AK293494 BC007405 BC007429	-58670	+	CU691524 DQ892469 DQ895682 AK301290 AK301295 X76562 BC037958 NM_005142 AK314275	31441	-	DQ892807 DQ896054 AK292990 BC018632 J05068 NM_001062	52474	-	BC048121 NM_173801 AK093517 AX748179 BC036256	226297	+	CR457117|MRPL16|54948|mitochondrial ribosomal protein L16##BC001040|MRPL16|54948|mitochondrial ribosomal protein L16##BC019269|MRPL16|54948|mitochondrial ribosomal protein L16##AB049642|MRPL16|54948|mitochondrial ribosomal protein L16##AK000491|MRPL16|54948|mitochondrial ribosomal protein L16##AF183428|MRPL16|54948|mitochondrial ribosomal protein L16##NM_017840|MRPL16|54948|mitochondrial ribosomal protein L16##AK312909|STX3|6809|syntaxin 3##AK297419|STX3|6809|syntaxin 3##AK290251|STX3|6809|syntaxin 3##U32315|STX3|6809|syntaxin 3##HQ447354|STX3|6809|syntaxin 3##AJ002076|STX3|6809|syntaxin 3##BT006666|STX3|6809|syntaxin 3##AK293494|STX3|6809|syntaxin 3##BC007405|STX3|6809|syntaxin 3##BC007429|STX3|6809|syntaxin 3##DQ892469|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##DQ895682|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##AK301290|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##AK301295|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##X76562|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##BC037958|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##NM_005142|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##AK314275|GIF|2694|gastric intrinsic factor (vitamin B synthesis)##DQ892807|TCN1|6947|transcobalamin I (vitamin B12 binding protein, R binder family)##DQ896054|TCN1|6947|transcobalamin I (vitamin B12 binding protein, R binder family)##AK292990|TCN1|6947|transcobalamin I (vitamin B12 binding protein, R binder family)##BC018632|TCN1|6947|transcobalamin I (vitamin B12 binding protein, R binder family)##J05068|TCN1|6947|transcobalamin I (vitamin B12 binding protein, R binder family)##NM_001062|TCN1|6947|transcobalamin I (vitamin B12 binding protein, R binder family)##BC048121|PLAC1L|219990|placenta-specific 1-like##NM_173801|PLAC1L|219990|placenta-specific 1-like##AK093517|PLAC1L|219990|placenta-specific 1-like##BC036256|PLAC1L|219990|placenta-specific 1-like	1.660334	0.0	denovo_WM_7:-5:0.399	denovo_WM_7:-20:0.240	denovo_WM_7:-21:0.319
chr16	68754344	68754521	reg1000149.p4	4.757	+	X63629 TSC_hg19_v1_chr16_+_68679239 AB527800 EU832319 EU832404	-75178	+	TSC_hg19_v1_chr16_+_68679201 AK296968 AK312554 AK225396	-75227	+	NM_001793	-76282	+	AK312551 TSC_hg19_v1_chr16_+_68771194 AK297913 EU709494 NM_004360 BC141838 BC146662 L08599	16769	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	16787	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	16813	+	X63629|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832319|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832404|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK296968|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312554|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK225396|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##NM_001793|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312551|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK297913|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##EU709494|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##NM_004360|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC141838|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC146662|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##L08599|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)	0.997657	0.0	denovo_WM_7:96:0.817
chr16	88748823	88748937	reg1001896.p2	4.757	+	TSC_hg19_v1_chr16_+_88729781 BC015583 BC050404	-19085	+	TSC_hg19_v1_chr16_+_88729753 BX640980	-19129	+	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	-19363	-	BC041461 AB464228 TSC_hg19_v1_chr16_-_88752874	3951	-	TSC_hg19_v1_chr16_-_88752882 BC107058 NM_178310	4011	-	AK057106 NM_001171816	21144	-	BC015583|MGC23284|197187|uncharacterized LOC197187##BC050404|MGC23284|197187|uncharacterized LOC197187##BX640980|MGC23284|197187|uncharacterized LOC197187##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##BC041461|SNAI3|333929|snail homolog 3 (Drosophila)##BC107058|SNAI3|333929|snail homolog 3 (Drosophila)##NM_178310|SNAI3|333929|snail homolog 3 (Drosophila)##AK057106|RNF166|115992|ring finger protein 166##NM_001171816|RNF166|115992|ring finger protein 166	0.0	0.0	
chr2	99065339	99065472	reg1001093.p2	4.757	+	TSC_hg19_v1_chr2_+_99061320 AK307823 BC028361 NM_001134224 NM_001134225 NM_001566 NM_004027 U26398 U96919	-4047	+	DQ067461 TSC_hg19_v1_chr2_+_98962901 DQ426864 DQ067459 AK308149	-102500	+	DQ426863 NM_001079878 NM_001298 DQ067460	-102772	+	HQ257887 TSC_hg19_v1_chr2_-_99224955 BC047722 NM_001008215 AK131034	159537	-	AL080115 BC025992 NM_014044 TSC_hg19_v1_chr2_+_99225051 BC091481	159645	+	TSC_hg19_v1_chr2_+_99225075 BC039078 AY017215 AK222599	159665	+	AK307823|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##BC028361|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001134224|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001134225|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_001566|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##NM_004027|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##U26398|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##U96919|INPP4A|3631|inositol polyphosphate-4-phosphatase, type I, 107kDa##DQ067461|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067459|CNGA3|1261|cyclic nucleotide gated channel alpha 3##AK308149|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ426863|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001079878|CNGA3|1261|cyclic nucleotide gated channel alpha 3##NM_001298|CNGA3|1261|cyclic nucleotide gated channel alpha 3##DQ067460|CNGA3|1261|cyclic nucleotide gated channel alpha 3##HQ257887|COA5|493753|cytochrome C oxidase assembly factor 5##BC047722|COA5|493753|cytochrome C oxidase assembly factor 5##NM_001008215|COA5|493753|cytochrome C oxidase assembly factor 5##AK131034|COA5|493753|cytochrome C oxidase assembly factor 5##AL080115|UNC50|25972|unc-50 homolog (C. elegans)##BC025992|UNC50|25972|unc-50 homolog (C. elegans)##NM_014044|UNC50|25972|unc-50 homolog (C. elegans)##BC091481|UNC50|25972|unc-50 homolog (C. elegans)##BC039078|UNC50|25972|unc-50 homolog (C. elegans)##AY017215|UNC50|25972|unc-50 homolog (C. elegans)##AK222599|UNC50|25972|unc-50 homolog (C. elegans)	0.0	0.0	
chrX	47408020	47408192	reg1011291.p1	4.757	+	BC015023 NM_007130 NM_153380	-65762	-	U28687 NM_003446 BC075003 AB528013 EU446919	-178083	+	TSC_hg19_v1_chrX_+_47092422 AK055588 AK098394 BC073960 BC063668 AB073597 BC000350 AB385092 U44839 AK294635	-315641	+	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	12461	+	TSC_hg19_v1_chrX_+_47441773 NM_003254 AK074854 AK296116 BC000866 BC007097	33617	+	TSC_hg19_v1_chrX_+_47441834 X03124 M12670 AK310206 AK311937 AK307222 M59906 X02598	33717	+	BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##AK055588|USP11|8237|ubiquitin specific peptidase 11##AK098394|USP11|8237|ubiquitin specific peptidase 11##BC073960|USP11|8237|ubiquitin specific peptidase 11##BC063668|USP11|8237|ubiquitin specific peptidase 11##AB073597|USP11|8237|ubiquitin specific peptidase 11##BC000350|USP11|8237|ubiquitin specific peptidase 11##U44839|USP11|8237|ubiquitin specific peptidase 11##AK294635|USP11|8237|ubiquitin specific peptidase 11##NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##NM_003254|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK074854|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK296116|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC000866|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC007097|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X03124|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M12670|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK310206|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK311937|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M59906|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X02598|TIMP1|7076|TIMP metallopeptidase inhibitor 1	0.994629	0.0	
chr11	85735437	85735569	reg1012474.p1	4.756	+	AK124113 NM_173556	-169360	+	TSC_hg19_v1_chr11_-_85522185 AB046817 NM_032943 AK296224 AK296740	-213322	-	BC136450 BC144114 BC144115 NM_001162951 NM_001162953	-266460	-	AB451308 BC048259 U45976 BC073961 TSC_hg19_v1_chr11_-_85779975	44395	-	TSC_hg19_v1_chr11_-_85780088 BC064357	44592	-	TSC_hg19_v1_chr11_-_85780127 AB210017 NM_001008660 NM_001206946 NM_007166 AK291414	44621	-	AK124113|CCDC83|220047|coiled-coil domain containing 83##NM_173556|CCDC83|220047|coiled-coil domain containing 83##AB046817|SYTL2|54843|synaptotagmin-like 2##NM_032943|SYTL2|54843|synaptotagmin-like 2##AK296224|SYTL2|54843|synaptotagmin-like 2##AK296740|SYTL2|54843|synaptotagmin-like 2##BC136450|SYTL2|54843|synaptotagmin-like 2##BC144114|SYTL2|54843|synaptotagmin-like 2##BC144115|SYTL2|54843|synaptotagmin-like 2##NM_001162951|SYTL2|54843|synaptotagmin-like 2##NM_001162953|SYTL2|54843|synaptotagmin-like 2##AB451308|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC048259|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##U45976|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC073961|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC064357|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AB210017|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001008660|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206946|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_007166|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AK291414|PICALM|8301|phosphatidylinositol binding clathrin assembly protein	1.996373	0.0	denovo_WM_7:-10:0.460	denovo_WM_7:-11:0.536	denovo_WM_7:-35:0.842
chr1	77179384	77179545	reg1008828.p1	4.756	+	TSC_hg19_v1_chr1_+_77165439 D28460	-14024	+	TSC_hg19_v1_chr1_+_76540430 NM_001160011 NM_152996 AK091215 AX746855 BC059363 AK297363 AY358540 AJ507291 CU691350	-639002	+	AF403035 CU691378 BC022517 AF429968 BC036573 AK098606 NM_080868	-781419	-	TSC_hg19_v1_chr1_+_77333125 AK056241	153663	+	TSC_hg19_v1_chr1_+_77333164 AK095758 AK300902 AK295019 BC001201 NM_030965	153707	+	Y07596 CU676676 AF022913 BC020737 TSC_hg19_v1_chr1_-_77685112 BC026186 AK304340 AK313015 BX648473 NM_005482	505639	-	D28460|TPI1|7167|triosephosphate isomerase 1##NM_001160011|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##NM_152996|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AK091215|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##BC059363|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AK297363|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AY358540|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AJ507291|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AF403035|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC022517|ASB17|127247|ankyrin repeat and SOCS box containing 17##AF429968|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC036573|ASB17|127247|ankyrin repeat and SOCS box containing 17##AK098606|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_080868|ASB17|127247|ankyrin repeat and SOCS box containing 17##AK056241|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK095758|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK300902|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK295019|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##BC001201|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##NM_030965|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##Y07596|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AF022913|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BC020737|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BC026186|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AK304340|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##AK313015|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##BX648473|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K##NM_005482|PIGK|10026|phosphatidylinositol glycan anchor biosynthesis, class K	0.665448	0.0	denovo_WM_7:18:0.618
chr18	21599678	21599812	reg1010587.p1	4.756	+	TSC_hg19_v1_chr18_+_21594754 AK074875	-4989	+	TSC_hg19_v1_chr18_+_21594449 BC016833 NM_001135993 NM_001243425	-5346	+	AK091080 AX746769 NM_153211 BC121034 BC121035	-26951	+	AK296442 TSC_hg19_v1_chr18_+_21693341	93583	+	TSC_hg19_v1_chr18_+_21718937 BC011996 NM_012189 NM_138643 NM_153768 NM_153769 NM_153770 AK313243	119210	+	AK225858 AK301889 TSC_hg19_v1_chr18_+_21719025 AF088868 AF295039 AF329634 AF295038 HQ659768	119297	+	AK074875|TTC39C|125488|tetratricopeptide repeat domain 39C##BC016833|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_001135993|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_001243425|TTC39C|125488|tetratricopeptide repeat domain 39C##AK091080|TTC39C|125488|tetratricopeptide repeat domain 39C##NM_153211|TTC39C|125488|tetratricopeptide repeat domain 39C##BC121034|TTC39C|125488|tetratricopeptide repeat domain 39C##BC121035|TTC39C|125488|tetratricopeptide repeat domain 39C##AK296442|TTC39C|125488|tetratricopeptide repeat domain 39C##BC011996|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##NM_012189|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##NM_138643|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##NM_153768|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##NM_153769|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##NM_153770|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AK313243|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AK225858|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AK301889|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AF088868|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AF295039|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AF329634|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated##AF295038|CABYR|26256|calcium binding tyrosine-(Y)-phosphorylation regulated	0.0	0.0	
chr3	45638218	45638348	reg1000837.p2	4.756	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	-2012	+	TSC_hg19_v1_chr3_+_45635397 M80651	-2698	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-208219	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	92450	+	TSC_hg19_v1_chr3_+_45730846 AK291142	92574	+	TSC_hg19_v1_chr3_+_45730887 AB020658 AK301248	92606	+	BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##M80651|LIMD1|8994|LIM domains containing 1##AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK291142|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AB020658|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK301248|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	0.998702	0.0	denovo_WM_7:80:0.450	denovo_WM_7:81:0.450
chr7	139358542	139358722	reg1013366.p3	4.756	+	NM_001080511	-149959	+	BC110858 BC104963 BC104965 AK126174 NM_198508	-190200	-	TSC_hg19_v1_chr7_+_139044997 AB528652 EU832106 EU832200 CU677843 AF151832 AF151817	-313618	+	TSC_hg19_v1_chr7_-_139477798 AF208291 AF326592 NM_001113239 NM_022740	119273	-	TSC_hg19_v1_chr7_+_139478042 BC014117 NM_001130966 NM_001166254	119407	+	NM_001061 NM_001166253 NM_030984 TSC_hg19_v1_chr7_+_139529052 BC041157 AK296069 AK301164 AK303440 AK301049 AB590730 M74055 S60133	170460	+	NM_001080511|CLEC2L|154790|C-type lectin domain family 2, member L##BC110858|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104963|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104965|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##AK126174|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##NM_198508|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##EU832106|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##EU832200|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151832|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151817|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF208291|HIPK2|28996|homeodomain interacting protein kinase 2##AF326592|HIPK2|28996|homeodomain interacting protein kinase 2##NM_001113239|HIPK2|28996|homeodomain interacting protein kinase 2##NM_022740|HIPK2|28996|homeodomain interacting protein kinase 2##BC014117|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001130966|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166254|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001061|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166253|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_030984|TBXAS1|6916|thromboxane A synthase 1 (platelet)##BC041157|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK296069|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301164|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK303440|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301049|TBXAS1|6916|thromboxane A synthase 1 (platelet)##M74055|TBXAS1|6916|thromboxane A synthase 1 (platelet)##S60133|TBXAS1|6916|thromboxane A synthase 1 (platelet)	1.990123	0.0	denovo_WM_7:7:0.311	denovo_WM_7:8:0.249	denovo_WM_7:25:0.258	denovo_WM_7:26:0.320
chr12	125481239	125481375	reg1000518.p1	4.755	+	TSC_hg19_v1_chr12_+_125478249 AF284094	-3047	+	TSC_hg19_v1_chr12_+_125478217 NM_080626 BC034525	-3117	+	TSC_hg19_v1_chr12_-_125473644 BC037964 NM_032656	-7663	-	BC040490 NM_023928 BC041000 TSC_hg19_v1_chr12_+_125549942	68634	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	68761	+	NM_052907	329854	+	AF284094|BRI3BP|140707|BRI3 binding protein##NM_080626|BRI3BP|140707|BRI3 binding protein##BC034525|BRI3BP|140707|BRI3 binding protein##BC037964|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##NM_032656|DHX37|57647|DEAH (Asp-Glu-Ala-His) box polypeptide 37##BC040490|AACS|65985|acetoacetyl-CoA synthetase##NM_023928|AACS|65985|acetoacetyl-CoA synthetase##BC041000|AACS|65985|acetoacetyl-CoA synthetase##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##NM_052907|TMEM132B|114795|transmembrane protein 132B	0.999575	0.0	denovo_WM_7:4:0.303	denovo_WM_7:5:0.303	denovo_WM_7:6:0.303
chr1	246411792	246411903	reg1010322.p1	4.755	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-1093539	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-1278164	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-1278217	+	AK024733 NM_022743	168864	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	258707	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	258761	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.998228	0.0	
chr4	175553463	175553548	reg1009596.p2	4.755	+	AK300524 NM_000860 NM_001145816	-109714	-	U63296 X82460 BC007691 BC018986 J05594 L76465 AK058013 AK300940 AK314624 AK300125 TSC_hg19_v1_chr4_-_175443639	-109885	-	BC014903 NM_012180 AK123740	-348098	-	U93917 BC036086 NM_001042543 NM_006529	196915	-	NM_001130703 NM_001130704 NM_001130705 NM_014269 AK292410 BC036070	286028	+	CU692222 CU692662 DQ892372 DQ895581 TSC_hg19_v1_chr4_-_176733403	1179888	-	AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##U63296|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##X82460|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC007691|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC018986|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##J05594|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##L76465|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK058013|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300940|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK314624|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300125|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC014903|FBXO8|26269|F-box protein 8##NM_012180|FBXO8|26269|F-box protein 8##AK123740|FBXO8|26269|F-box protein 8##U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3##NM_001130703|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130704|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130705|ADAM29|11086|ADAM metallopeptidase domain 29##NM_014269|ADAM29|11086|ADAM metallopeptidase domain 29##AK292410|ADAM29|11086|ADAM metallopeptidase domain 29##BC036070|ADAM29|11086|ADAM metallopeptidase domain 29##DQ892372|GPM6A|2823|glycoprotein M6A##DQ895581|GPM6A|2823|glycoprotein M6A	0.0	0.266331	CTCF.p2:6:0.266
chr6	166754932	166755078	reg1007875.p1	4.755	+	BC034775 NM_175922 TSC_hg19_v1_chr6_-_166721880	-33129	-	BC098425 NM_003181	-172876	-	BC008632 BC039614 TSC_hg19_v1_chr6_-_166401541 BX647106	-353471	-	BC018969 NM_145169 TSC_hg19_v1_chr6_-_166756020	1002	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	1029	-	CU674406 TSC_hg19_v1_chr6_-_166796429 BC000810 AK312201 AK310934	41404	-	BC034775|PRR18|285800|proline rich 18##NM_175922|PRR18|285800|proline rich 18##BC098425|T|6862|T, brachyury homolog (mouse)##NM_003181|T|6862|T, brachyury homolog (mouse)##BC008632|LINC00473|90632|long intergenic non-protein coding RNA 473##BC039614|LINC00473|90632|long intergenic non-protein coding RNA 473##BC018969|SFT2D1|113402|SFT2 domain containing 1##NM_145169|SFT2D1|113402|SFT2 domain containing 1##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1##BC000810|BRP44L|51660|brain protein 44-like##AK312201|BRP44L|51660|brain protein 44-like	0.99642	0.0	
chr9	139014859	139014978	reg1012531.p1	4.755	+	TSC_hg19_v1_chr9_-_139010722 NM_152833	-4189	-	BC014304 BC013282 TSC_hg19_v1_chr9_-_139010700 AK023162 AK091349 AX746927 BC021231	-4248	-	BC092490 BC111053 TSC_hg19_v1_chr9_-_139010485	-4483	-	AB590758 AB593065 AF156889 NM_014564 AB593066 TSC_hg19_v1_chr9_-_139095090	80070	-	AF156888 NM_178138 AB593067 AB593063 AB593062	82046	-	BC047604 AB527428 TSC_hg19_v1_chr9_-_139137659 AJ318051 NM_181701	122767	-	NM_152833|C9orf69|90120|chromosome 9 open reading frame 69##BC014304|C9orf69|90120|chromosome 9 open reading frame 69##BC013282|C9orf69|90120|chromosome 9 open reading frame 69##AK023162|C9orf69|90120|chromosome 9 open reading frame 69##AK091349|C9orf69|90120|chromosome 9 open reading frame 69##BC021231|C9orf69|90120|chromosome 9 open reading frame 69##BC092490|C9orf69|90120|chromosome 9 open reading frame 69##BC111053|C9orf69|90120|chromosome 9 open reading frame 69##AB593065|LHX3|8022|LIM homeobox 3##AF156889|LHX3|8022|LIM homeobox 3##NM_014564|LHX3|8022|LIM homeobox 3##AB593066|LHX3|8022|LIM homeobox 3##AF156888|LHX3|8022|LIM homeobox 3##NM_178138|LHX3|8022|LIM homeobox 3##AB593067|LHX3|8022|LIM homeobox 3##AB593063|LHX3|8022|LIM homeobox 3##AB593062|LHX3|8022|LIM homeobox 3##BC047604|QSOX2|169714|quiescin Q6 sulfhydryl oxidase 2##AJ318051|QSOX2|169714|quiescin Q6 sulfhydryl oxidase 2##NM_181701|QSOX2|169714|quiescin Q6 sulfhydryl oxidase 2	0.0	0.979589	CTCF.p2:10:0.980
chr12	49208518	49208633	reg1011745.p1	4.754	+	NM_001206917 AK304537 AK300901	-337	+	TSC_hg19_v1_chr12_-_49182812 AB007882 NM_020983 BC064923	-25767	-	AK225224 NM_015270 AF250226	-30682	-	TSC_hg19_v1_chr12_+_49208615 AK122911	70	+	TSC_hg19_v1_chr12_+_49209373 NM_001206916 AK297639 AK316323	761	+	NM_000725 NM_001206915 TSC_hg19_v1_chr12_+_49212307	3708	+	NM_001206917|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK304537|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK300901|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AB007882|ADCY6|112|adenylate cyclase 6##NM_020983|ADCY6|112|adenylate cyclase 6##BC064923|ADCY6|112|adenylate cyclase 6##AK225224|ADCY6|112|adenylate cyclase 6##NM_015270|ADCY6|112|adenylate cyclase 6##AF250226|ADCY6|112|adenylate cyclase 6##AK122911|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##NM_001206916|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK297639|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##AK316323|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##NM_000725|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit##NM_001206915|CACNB3|784|calcium channel, voltage-dependent, beta 3 subunit	0.0	1.646338	CTCF.p2:-24:0.678	CTCF.p2:32:0.968
chr12	75083007	75083103	reg1010783.p1	4.754	+	AK054742 TSC_hg19_v1_chr12_+_74933681	-149435	+	TSC_hg19_v1_chr12_+_74931622 BC009111 AL713650	-151416	+	NM_001136262 TSC_hg19_v1_chr12_+_74931614 AK056642	-151470	+	AK309245 AB209994 AK294269 TSC_hg19_v1_chr12_-_75603243	520173	-	AK094720 NM_139136 NM_139137 NM_153748	520455	-	BC033860 AK091839 AX747212 NM_032606	640764	-	BC009111|ATXN7L3B|552889|ataxin 7-like 3B##AL713650|ATXN7L3B|552889|ataxin 7-like 3B##NM_001136262|ATXN7L3B|552889|ataxin 7-like 3B##AK056642|ATXN7L3B|552889|ataxin 7-like 3B##AK309245|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##AB209994|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##AK294269|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##AK094720|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_139136|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_139137|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##NM_153748|KCNC2|3747|potassium voltage-gated channel, Shaw-related subfamily, member 2##BC033860|CAPS2|84698|calcyphosine 2##AK091839|CAPS2|84698|calcyphosine 2##NM_032606|CAPS2|84698|calcyphosine 2	0.0	0.946009	CTCF.p2:-19:0.946
chr12	8232853	8232975	reg1010834.p1	4.754	+	TSC_hg19_v1_chr12_-_8219032 U62027	-13898	-	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	-13961	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	-47424	+	TSC_hg19_v1_chr12_+_8234872 NM_015509 AK074880 AK074858 AK074923 AK303675 AK314424 BC110876 AL050272 AK290537 BC002888	1937	+	AF067800 NM_016184 NM_194447 NM_194448 NM_194450 AJ133532 AF328684 BC117439 BC117441 AF109146 BC074822 BC074874 AF200738 HQ258754 EU196761	43453	+	NM_001004328	92235	+	U62027|C3AR1|719|complement component 3a receptor 1##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##NM_018416|FOXJ2|55810|forkhead box J2##NM_015509|NECAP1|25977|NECAP endocytosis associated 1##AK074880|NECAP1|25977|NECAP endocytosis associated 1##AK074858|NECAP1|25977|NECAP endocytosis associated 1##AK074923|NECAP1|25977|NECAP endocytosis associated 1##AK303675|NECAP1|25977|NECAP endocytosis associated 1##AK314424|NECAP1|25977|NECAP endocytosis associated 1##BC110876|NECAP1|25977|NECAP endocytosis associated 1##AL050272|NECAP1|25977|NECAP endocytosis associated 1##AK290537|NECAP1|25977|NECAP endocytosis associated 1##BC002888|NECAP1|25977|NECAP endocytosis associated 1##AF067800|CLEC4A|50856|C-type lectin domain family 4, member A##NM_016184|CLEC4A|50856|C-type lectin domain family 4, member A##NM_194447|CLEC4A|50856|C-type lectin domain family 4, member A##NM_194448|CLEC4A|50856|C-type lectin domain family 4, member A##NM_194450|CLEC4A|50856|C-type lectin domain family 4, member A##AJ133532|CLEC4A|50856|C-type lectin domain family 4, member A##AF328684|CLEC4A|50856|C-type lectin domain family 4, member A##BC117439|CLEC4A|50856|C-type lectin domain family 4, member A##BC117441|CLEC4A|50856|C-type lectin domain family 4, member A##AF109146|CLEC4A|50856|C-type lectin domain family 4, member A##BC074822|CLEC4A|50856|C-type lectin domain family 4, member A##BC074874|CLEC4A|50856|C-type lectin domain family 4, member A##AF200738|CLEC4A|50856|C-type lectin domain family 4, member A##HQ258754|CLEC4A|50856|C-type lectin domain family 4, member A##NM_001004328|ZNF705A|440077|zinc finger protein 705A	0.68614	0.0	denovo_WM_7:89:0.331
chr17	57921984	57922102	reg1009636.p3	4.754	+	TSC_hg19_v1_chr17_+_57915291 AK310806	-6737	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-136970	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-137008	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	48148	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	48419	+	TSC_hg19_v1_chr17_+_57970492 AK300202 AK312875 BC053365 M60724 AB384946 CU690966 AK297147	48499	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK300202|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK312875|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC053365|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##M60724|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK297147|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	1.113643	0.0	
chr20	5062377	5062509	reg1008331.p1	4.754	+	BC013112 AF164142 NM_203327	-71518	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-80283	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-258249	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	31172	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	38112	-	AK300558 AK311014 NM_002592	44783	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	1.977299	0.0	denovo_WM_7:70:0.724	denovo_WM_7:86:0.203	denovo_WM_7:87:0.203	denovo_WM_7:88:0.345
chr5	169146906	169147030	reg1010472.p2	4.754	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-82668	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-82724	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-136247	+	AK055998 NM_001129891	260775	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	386003	+	BC030767 NM_001102609 BC092511	513028	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.998958	0.0	denovo_WM_7:-35:0.479	denovo_WM_7:-36:0.427
chr14	24666231	24666411	reg1012318.p1	4.753	+	TSC_hg19_v1_chr14_-_24664891 BX161494 AK304642 BX161390 NM_001014842 NM_006405	-1473	-	TSC_hg19_v1_chr14_-_24664634 AK292110	-1675	-	TSC_hg19_v1_chr14_-_24658018 AB208897 AK302097 AK094107 BC110804 AK095306 AK056527 AK057277 BC136759 BC144399 BC144400 NM_024658	-8255	-	BC029918 AK131042 NM_001184739 NM_174944 BC111088 AY461663	8610	+	TSC_hg19_v1_chr14_-_24682649 AY329084	16325	-	TSC_hg19_v1_chr14_-_24682664 AF212243	16341	-	BX161494|TM9SF1|10548|transmembrane 9 superfamily member 1##AK304642|TM9SF1|10548|transmembrane 9 superfamily member 1##BX161390|TM9SF1|10548|transmembrane 9 superfamily member 1##NM_001014842|TM9SF1|10548|transmembrane 9 superfamily member 1##NM_006405|TM9SF1|10548|transmembrane 9 superfamily member 1##AK292110|TM9SF1|10548|transmembrane 9 superfamily member 1##AB208897|IPO4|79711|importin 4##AK302097|IPO4|79711|importin 4##AK094107|IPO4|79711|importin 4##BC110804|IPO4|79711|importin 4##AK095306|IPO4|79711|importin 4##AK056527|IPO4|79711|importin 4##AK057277|IPO4|79711|importin 4##BC136759|IPO4|79711|importin 4##BC144399|IPO4|79711|importin 4##BC144400|IPO4|79711|importin 4##NM_024658|IPO4|79711|importin 4##BC029918|TSSK4|283629|testis-specific serine kinase 4##AK131042|TSSK4|283629|testis-specific serine kinase 4##NM_001184739|TSSK4|283629|testis-specific serine kinase 4##NM_174944|TSSK4|283629|testis-specific serine kinase 4##BC111088|TSSK4|283629|testis-specific serine kinase 4##AY461663|TSSK4|283629|testis-specific serine kinase 4##AY329084|CHMP4A|29082|charged multivesicular body protein 4A##AF212243|CHMP4A|29082|charged multivesicular body protein 4A	1.963291	0.0	denovo_WM_7:-1:0.847	denovo_WM_7:-18:0.307	denovo_WM_7:-19:0.308	denovo_WM_7:-20:0.314
chr14	73941649	73941779	reg1009236.p1	4.753	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-16423	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-16447	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-16482	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	15911	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	15949	+	TSC_hg19_v1_chr14_+_73957674 AY390535	15959	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.990257	0.0	denovo_WM_7:30:0.975
chr3	190963902	190964015	reg1011411.p1	4.753	+	AY398681 AY573933 BC128106 BC128107 NM_198184	-33637	+	NM_001146686	-383494	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	-732081	+	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	83208	+	AK090630 AX746546 NM_198152	84366	-	AY858112 NM_001083308	214993	+	AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##NM_001146686|GMNC|647309|geminin coiled-coil domain containing##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2	1.016429	0.0	
chr12	110894735	110894858	reg1000648.p2	4.752	+	TSC_hg19_v1_chr12_-_110888163 AK311789	-6627	-	TSC_hg19_v1_chr12_-_110888152 NM_005719	-6642	-	TSC_hg19_v1_chr12_-_110888134 AK297309	-6654	-	AM992619 AM992620 AY364262 CU678955 CU689082 AB528074 AM393009 AM393821 TSC_hg19_v1_chr12_-_110906038 AF117229	11234	-	TSC_hg19_v1_chr12_-_110906063 AK223209 AK314946 BC008416 BC031024 AY359078 BX537973 NM_001164373 NM_016301	11276	-	TSC_hg19_v1_chr12_+_110906228 AK296280 AK297684 NM_013300 AK225731 U79274 BC020967	11513	+	AK311789|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##NM_005719|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AK297309|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa##AM992619|GPN3|51184|GPN-loop GTPase 3##AM992620|GPN3|51184|GPN-loop GTPase 3##AY364262|GPN3|51184|GPN-loop GTPase 3##AM393009|GPN3|51184|GPN-loop GTPase 3##AM393821|GPN3|51184|GPN-loop GTPase 3##AF117229|GPN3|51184|GPN-loop GTPase 3##AK223209|GPN3|51184|GPN-loop GTPase 3##AK314946|GPN3|51184|GPN-loop GTPase 3##BC008416|GPN3|51184|GPN-loop GTPase 3##BC031024|GPN3|51184|GPN-loop GTPase 3##AY359078|GPN3|51184|GPN-loop GTPase 3##BX537973|GPN3|51184|GPN-loop GTPase 3##NM_001164373|GPN3|51184|GPN-loop GTPase 3##NM_016301|GPN3|51184|GPN-loop GTPase 3##AK296280|C12orf24|29902|chromosome 12 open reading frame 24##AK297684|C12orf24|29902|chromosome 12 open reading frame 24##NM_013300|C12orf24|29902|chromosome 12 open reading frame 24##AK225731|C12orf24|29902|chromosome 12 open reading frame 24##U79274|C12orf24|29902|chromosome 12 open reading frame 24##BC020967|C12orf24|29902|chromosome 12 open reading frame 24	0.0	0.0	
chr1	226063750	226063910	reg1010962.p1	4.752	+	DQ892506 DQ895720 CU678903 CR541963 M36374 TSC_hg19_v1_chr1_+_226016535	-47349	+	TSC_hg19_v1_chr1_+_226013054 NM_000120 L25879 J03518 Y00424 L25878 X07936	-50755	+	TSC_hg19_v1_chr1_+_225997825 U34722 BC095430 BC003567 BC008291	-66003	+	TSC_hg19_v1_chr1_-_226070033 AB018335 AK222934 AK222944 BC030245 AK022502	6220	-	NM_014698	6589	-	CU693310 AB590421 DQ896626 AY358873 BC027883 AF081512 AK309263 TSC_hg19_v1_chr1_-_226076847 AK129605 AK222714 AK313115 NM_020997	12978	-	DQ892506|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##DQ895720|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##CR541963|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##M36374|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##NM_000120|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##L25879|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##J03518|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##Y00424|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##L25878|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##X07936|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##U34722|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##BC095430|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##BC003567|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##BC008291|EPHX1|2052|epoxide hydrolase 1, microsomal (xenobiotic)##AB018335|TMEM63A|9725|transmembrane protein 63A##AK222934|TMEM63A|9725|transmembrane protein 63A##AK222944|TMEM63A|9725|transmembrane protein 63A##BC030245|TMEM63A|9725|transmembrane protein 63A##AK022502|TMEM63A|9725|transmembrane protein 63A##NM_014698|TMEM63A|9725|transmembrane protein 63A##DQ896626|LEFTY1|10637|left-right determination factor 1##AY358873|LEFTY1|10637|left-right determination factor 1##BC027883|LEFTY1|10637|left-right determination factor 1##AF081512|LEFTY1|10637|left-right determination factor 1##AK309263|LEFTY1|10637|left-right determination factor 1##AK129605|LEFTY1|10637|left-right determination factor 1##AK222714|LEFTY1|10637|left-right determination factor 1##AK313115|LEFTY1|10637|left-right determination factor 1##NM_020997|LEFTY1|10637|left-right determination factor 1	1.993902	0.0	
chr1	38987829	38987964	reg1012195.p1	4.752	+	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	-475447	-	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-509466	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-509511	+	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	337490	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	351120	-	AK312811 BC051675 AK123051 NM_030772	359381	-	L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein##AK312811|GJA9|81025|gap junction protein, alpha 9, 59kDa##BC051675|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##AK123051|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##NM_030772|GJA9|81025|gap junction protein, alpha 9, 59kDa	0.998839	0.134572	
chr16	15241482	15241618	reg1010790.p1	4.752	+	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	-53422	-	CU675948 AF092440 BC017336 NM_173474 AK300557 TSC_hg19_v1_chr16_-_15149897	-91673	-	AY203955 TSC_hg19_v1_chr16_+_15069016 DQ111782	-172518	+	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	248051	+	TSC_hg19_v1_chr16_+_15489637 AK096918 AK293380 BC061514	248100	+	AK057180 NM_033201 TSC_hg19_v1_chr16_+_15528363 AK293431 BC008967	286850	+	AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF092440|NTAN1|123803|N-terminal asparagine amidase##BC017336|NTAN1|123803|N-terminal asparagine amidase##NM_173474|NTAN1|123803|N-terminal asparagine amidase##AK300557|NTAN1|123803|N-terminal asparagine amidase##AY203955|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ111782|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK096918|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK293380|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC061514|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK057180|C16orf45|89927|chromosome 16 open reading frame 45##NM_033201|C16orf45|89927|chromosome 16 open reading frame 45##AK293431|C16orf45|89927|chromosome 16 open reading frame 45##BC008967|C16orf45|89927|chromosome 16 open reading frame 45	0.987855	0.0	denovo_WM_7:6:0.967
chr3	51543870	51543981	reg1010965.p2	4.752	+	TSC_hg19_v1_chr3_-_51534015 AB018343 BC110371 NM_001171904 NM_014703	-9919	-	BC022792 TSC_hg19_v1_chr3_-_51533986	-9976	-	TSC_hg19_v1_chr3_+_51428730 BC121184 BC139836	-115175	+	AK122683 NM_015106	31670	+	NM_001129884 NM_001243727 NM_015926 TSC_hg19_v1_chr3_+_51705247 AK023997 AK222938 AK222949 BC008742 NM_001243725 NM_001243726 AY358972 BC001592	161341	+	NM_000839 NM_001130063 AK315816 AK289984 AK313056 BC041447	197167	+	AB018343|VPRBP|9730|Vpr (HIV-1) binding protein##BC110371|VPRBP|9730|Vpr (HIV-1) binding protein##NM_001171904|VPRBP|9730|Vpr (HIV-1) binding protein##NM_014703|VPRBP|9730|Vpr (HIV-1) binding protein##BC022792|VPRBP|9730|Vpr (HIV-1) binding protein##BC121184|RBM15B|29890|RNA binding motif protein 15B##BC139836|RBM15B|29890|RNA binding motif protein 15B##AK122683|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_015106|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_001129884|TEX264|51368|testis expressed 264##NM_001243727|TEX264|51368|testis expressed 264##NM_015926|TEX264|51368|testis expressed 264##AK023997|TEX264|51368|testis expressed 264##AK222938|TEX264|51368|testis expressed 264##AK222949|TEX264|51368|testis expressed 264##BC008742|TEX264|51368|testis expressed 264##NM_001243725|TEX264|51368|testis expressed 264##NM_001243726|TEX264|51368|testis expressed 264##AY358972|TEX264|51368|testis expressed 264##BC001592|TEX264|51368|testis expressed 264##NM_000839|GRM2|2912|glutamate receptor, metabotropic 2##NM_001130063|GRM2|2912|glutamate receptor, metabotropic 2##AK315816|GRM2|2912|glutamate receptor, metabotropic 2##AK289984|GRM2|2912|glutamate receptor, metabotropic 2##AK313056|GRM2|2912|glutamate receptor, metabotropic 2##BC041447|GRM2|2912|glutamate receptor, metabotropic 2	0.994344	0.0	
chr5	142693920	142694041	reg1009866.p1	4.752	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-543672	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-544008	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-616409	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	88843	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	89126	-	BC015610 TSC_hg19_v1_chr5_-_142783214	89231	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.998691	0.0	denovo_WM_7:13:0.295	denovo_WM_7:14:0.295	denovo_WM_7:15:0.295
chr5	171577552	171577643	reg1012992.p1	4.752	+	BC026213 NM_012300 NM_033644 NM_033645	-143721	-	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	-143953	-	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	-144069	-	AB015718 TSC_hg19_v1_chr5_-_171615170	37541	-	AK307943 TSC_hg19_v1_chr5_-_171615203	37606	-	TSC_hg19_v1_chr5_-_171615241 BC070077 AK313350	37676	-	BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11##AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##AB015718|STK10|6793|serine/threonine kinase 10##AK307943|STK10|6793|serine/threonine kinase 10##BC070077|STK10|6793|serine/threonine kinase 10##AK313350|STK10|6793|serine/threonine kinase 10	0.0	0.0	
chr5	75842668	75842788	reg1010723.p1	4.752	+	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	-143612	+	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	-463457	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-829468	-	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	76417	-	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	169228	+	NM_005242 BC018130 TSC_hg19_v1_chr5_+_76114854 U34038	272124	+	AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor##NM_005242|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC018130|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##U34038|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1	0.224201	0.0	
chr7	45039386	45039505	reg1004226.p2	4.752	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-13205	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-20748	-	BC113544 BC117241 TSC_hg19_v1_chr7_-_45018675 AB290179 AL832302	-20783	-	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	409	+	NM_001029835 AK298671 AK303216 AK303534	27806	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	89054	-	AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##BC113544|MYO1G|64005|myosin IG##BC117241|MYO1G|64005|myosin IG##AB290179|MYO1G|64005|myosin IG##AL832302|MYO1G|64005|myosin IG##AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing	0.0	0.0	
chr10	12686935	12687047	reg1012941.p1	4.751	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-295214	+	TSC_hg19_v1_chr10_+_12391709 BC035745	-295274	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	-295416	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	356708	-	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	455154	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	516577	+	AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10	0.706073	0.0	denovo_WM_7:15:0.538
chr17	49134206	49134386	reg1011102.p1	4.751	+	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-10068	-	AK313904 NM_001243877	-188958	-	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	-190600	-	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	63859	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	96615	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	96636	+	BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	0.017954	0.419118	CTCF.p2:7:0.419
chr19	11562831	11562999	reg1008097.p2	4.751	+	AB385574 AF144075 TSC_hg19_v1_chr19_+_11546995 BC013586	-15946	+	TSC_hg19_v1_chr19_+_11546486 AK290433	-16373	+	J03075 TSC_hg19_v1_chr19_+_11546469 Z36798 AK225390	-16447	+	BC080533 BC011875 TSC_hg19_v1_chr19_-_11564576	1657	-	TSC_hg19_v1_chr19_-_11565617 BC068222	2713	-	AY036909 L26405 D26158 BC014144 NM_001420 NM_032281 TSC_hg19_v1_chr19_-_11591862	28738	-	AF144075|PRKCSH|5589|protein kinase C substrate 80K-H##BC013586|PRKCSH|5589|protein kinase C substrate 80K-H##AK290433|PRKCSH|5589|protein kinase C substrate 80K-H##J03075|PRKCSH|5589|protein kinase C substrate 80K-H##Z36798|PRKCSH|5589|protein kinase C substrate 80K-H##AK225390|PRKCSH|5589|protein kinase C substrate 80K-H##BC080533|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC011875|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##AY036909|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##L26405|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##D26158|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC014144|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_001420|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_032281|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	0.0	0.0	
chr6	130019605	130019773	reg1009202.p1	4.751	+	NM_000426 NM_001079823 Z26653	-815376	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1178033	-	AK124031 NM_001164687	-1779931	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	11637	-	NM_001010876	162726	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	320036	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.998493	0.0	denovo_WM_7:-1:0.457	denovo_WM_7:-2:0.457
chr6	36946578	36946690	reg1010107.p1	4.751	+	BC035634 NM_153370	-24426	+	NM_001199159	-30596	+	NM_152734 AJ420498 TSC_hg19_v1_chr6_+_36853727 BC095423 AK172780 AK315984 BC105947 BC107489 BC105946 BX538108 AK300351 AY358637 BX647220 BC023605	-92924	+	TSC_hg19_v1_chr6_-_36953911 BC006507 CU674346 CU691916 AF151822 AK303318 BC000702 BC040659 AF189289 AY947344	7148	-	TSC_hg19_v1_chr6_-_36953924 BC009962 AK225628	7292	-	TSC_hg19_v1_chr6_-_36953944 BC125056	7309	-	BC035634|PI16|221476|peptidase inhibitor 16##NM_153370|PI16|221476|peptidase inhibitor 16##NM_001199159|PI16|221476|peptidase inhibitor 16##NM_152734|C6orf89|221477|chromosome 6 open reading frame 89##AJ420498|C6orf89|221477|chromosome 6 open reading frame 89##BC095423|C6orf89|221477|chromosome 6 open reading frame 89##AK172780|C6orf89|221477|chromosome 6 open reading frame 89##AK315984|C6orf89|221477|chromosome 6 open reading frame 89##BC105947|C6orf89|221477|chromosome 6 open reading frame 89##BC107489|C6orf89|221477|chromosome 6 open reading frame 89##BC105946|C6orf89|221477|chromosome 6 open reading frame 89##BX538108|C6orf89|221477|chromosome 6 open reading frame 89##AK300351|C6orf89|221477|chromosome 6 open reading frame 89##AY358637|C6orf89|221477|chromosome 6 open reading frame 89##BX647220|C6orf89|221477|chromosome 6 open reading frame 89##BC023605|C6orf89|221477|chromosome 6 open reading frame 89##BC006507|MTCH1|23787|mitochondrial carrier 1##AF151822|MTCH1|23787|mitochondrial carrier 1##AK303318|MTCH1|23787|mitochondrial carrier 1##BC000702|MTCH1|23787|mitochondrial carrier 1##BC040659|MTCH1|23787|mitochondrial carrier 1##AF189289|MTCH1|23787|mitochondrial carrier 1##AY947344|MTCH1|23787|mitochondrial carrier 1##BC009962|MTCH1|23787|mitochondrial carrier 1##AK225628|MTCH1|23787|mitochondrial carrier 1##BC125056|MTCH1|23787|mitochondrial carrier 1	1.00901	0.0	
chr12	51716385	51716507	reg1009671.p1	4.750	+	BC120965 BC120966 BC008712 TSC_hg19_v1_chr12_-_51663988 NM_001033873 BC001400 AK001839 NM_001031628	-52361	-	TSC_hg19_v1_chr12_+_51632658 AB385271 CU677910 AK125855	-83774	+	TSC_hg19_v1_chr12_+_51632650 D31767 BC002334 BC007900 AK095963	-83811	+	TSC_hg19_v1_chr12_-_51717901 CU690454 AF146531	1422	-	TSC_hg19_v1_chr12_-_51717911 AK093638 AB032698 AK000783 AK225911 NM_016293	1475	-	TSC_hg19_v1_chr12_-_51717961 BC047686 AK314304	1534	-	BC120965|SMAGP|57228|small cell adhesion glycoprotein##BC120966|SMAGP|57228|small cell adhesion glycoprotein##BC008712|SMAGP|57228|small cell adhesion glycoprotein##NM_001033873|SMAGP|57228|small cell adhesion glycoprotein##BC001400|SMAGP|57228|small cell adhesion glycoprotein##AK001839|SMAGP|57228|small cell adhesion glycoprotein##NM_001031628|SMAGP|57228|small cell adhesion glycoprotein##AK125855|DAZAP2|9802|DAZ associated protein 2##D31767|DAZAP2|9802|DAZ associated protein 2##BC002334|DAZAP2|9802|DAZ associated protein 2##BC007900|DAZAP2|9802|DAZ associated protein 2##AK095963|DAZAP2|9802|DAZ associated protein 2##AF146531|BIN2|51411|bridging integrator 2##AK093638|BIN2|51411|bridging integrator 2##AB032698|BIN2|51411|bridging integrator 2##AK000783|BIN2|51411|bridging integrator 2##AK225911|BIN2|51411|bridging integrator 2##NM_016293|BIN2|51411|bridging integrator 2##BC047686|BIN2|51411|bridging integrator 2##AK314304|BIN2|51411|bridging integrator 2	0.989611	0.0	denovo_WM_7:-46:0.738	denovo_WM_7:-47:0.209
chr15	96389949	96390129	reg1009028.p2	4.750	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-519720	-	NM_001159644 BC025708 BC111024 AK002037	-1490730	+	NM_001159643 NM_018349 AY656717 BC131527	-1548578	+	BC106083 NM_001145155 FM208183	479122	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	483938	+	AK316086 NM_001145156	485754	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.0	0.0	
chr17	31162108	31162258	reg1009638.p1	4.750	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-347423	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-347586	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-348112	+	CU688936 AB385376 AB018270 BC146763 NM_015194	41712	-	TSC_hg19_v1_chr17_-_31204141 AK127942	41940	-	TSC_hg19_v1_chr17_-_31204196 BC030602	42030	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	0.945147	0.0	denovo_WM_7:5:0.668
chr19	2171555	2171654	reg1008472.p2	4.750	+	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	-7466	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-20051	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	-20062	-	BC021037 TSC_hg19_v1_chr19_+_2222534	50870	+	BC032803 TSC_hg19_v1_chr19_+_2232168	60517	+	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	64685	-	AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1	0.0	0.013374	
chr3	149230001	149230128	reg1010200.p1	4.750	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-37575	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-37662	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-134522	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	145671	-	AK022036 NM_001168278	190995	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	240175	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.982053	0.0	denovo_WM_7:-50:0.688
chr3	196965779	196965920	reg1011026.p1	4.750	+	AK294855 NM_001204387 NM_001204388	-54848	-	TSC_hg19_v1_chr3_-_196756689 NM_033316 NM_005929	-209147	-	BT007377 AB527337 M12154 BC093920 BC111947 BC143257 BC002623 BC001875 BC007550 BC053510 BC071910 TSC_hg19_v1_chr3_-_196756658 BC032752	-209226	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	59084	-	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	59625	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	316993	-	AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_033316|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##NM_005929|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BT007377|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##M12154|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC093920|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC111947|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC143257|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC002623|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC001875|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC007550|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC053510|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC071910|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032752|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1	0.554065	0.0	denovo_WM_7:-6:0.517
chr1	221242569	221242749	reg1003835.p1	4.749	+	TSC_hg19_v1_chr1_+_221053066 AB463713 DQ893305 DQ896761	-189560	+	TSC_hg19_v1_chr1_+_221052845 AK127923 AK313298 BC033808	-189745	+	TSC_hg19_v1_chr1_+_221052739 AK056326 NM_021958 BC007294 AB208812 M60721	-189898	+	NM_144728	668142	-	AF179212 TSC_hg19_v1_chr1_-_221915417 BC063826 BC031405	672749	-	TSC_hg19_v1_chr1_-_221915432 AK022513 AK293287	672771	-	DQ893305|HLX|3142|H2.0-like homeobox##DQ896761|HLX|3142|H2.0-like homeobox##AK127923|HLX|3142|H2.0-like homeobox##AK313298|HLX|3142|H2.0-like homeobox##BC033808|HLX|3142|H2.0-like homeobox##AK056326|HLX|3142|H2.0-like homeobox##NM_021958|HLX|3142|H2.0-like homeobox##BC007294|HLX|3142|H2.0-like homeobox##AB208812|HLX|3142|H2.0-like homeobox##M60721|HLX|3142|H2.0-like homeobox##NM_144728|DUSP10|11221|dual specificity phosphatase 10##AF179212|DUSP10|11221|dual specificity phosphatase 10##BC063826|DUSP10|11221|dual specificity phosphatase 10##BC031405|DUSP10|11221|dual specificity phosphatase 10##AK022513|DUSP10|11221|dual specificity phosphatase 10##AK293287|DUSP10|11221|dual specificity phosphatase 10	0.0	0.0	
chr1	235099012	235099078	reg1008646.p1	4.749	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-203271	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-353799	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-355187	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	193044	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	193186	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	225518	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr20	46115942	46116122	reg1008497.p1	4.749	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-130544	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-139385	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-188463	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	14590	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	14652	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	298720	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.0	0.0	
chr5	115612764	115612939	reg1011793.p1	4.749	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-192130	+	NM_001195581	-225689	+	AK291655 BC068560 NM_173800 BC060869 AY560010 BC109022 BC109023	-314640	+	TSC_hg19_v1_chr5_+_115898220 D28352	285373	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	297663	-	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2711387	-	AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##NM_001195581|LOC644100|644100|uncharacterized LOC644100##AK291655|AQPEP|206338|laeverin##BC068560|AQPEP|206338|laeverin##NM_173800|AQPEP|206338|laeverin##BC060869|AQPEP|206338|laeverin##AY560010|AQPEP|206338|laeverin##BC109022|AQPEP|206338|laeverin##BC109023|AQPEP|206338|laeverin##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2	0.0	0.0	
chr6	143178298	143178433	reg1011204.p2	4.749	+	TSC_hg19_v1_chr6_+_142623443 BX640873	-554959	+	TSC_hg19_v1_chr6_+_142623145 BC075798 NM_001032394 NM_001032395 NM_020455 NM_198569 AF216967 AB183546 AB183547 AB183548 AB183549 AK307543 AK122617 BX648315	-555296	+	TSC_hg19_v1_chr6_+_142510627 BC013217	-667736	+	TSC_hg19_v1_chr6_-_143266314 CR936782 NM_006734	87963	-	TSC_hg19_v1_chr6_+_143382007 AK298533 AK222475 NM_016108	203630	+	BC009559 TSC_hg19_v1_chr6_+_143382031 AF153605 AK001347 BX640703	203671	+	BX640873|GPR126|57211|G protein-coupled receptor 126##BC075798|GPR126|57211|G protein-coupled receptor 126##NM_001032394|GPR126|57211|G protein-coupled receptor 126##NM_001032395|GPR126|57211|G protein-coupled receptor 126##NM_020455|GPR126|57211|G protein-coupled receptor 126##NM_198569|GPR126|57211|G protein-coupled receptor 126##AF216967|GPR126|57211|G protein-coupled receptor 126##AB183546|GPR126|57211|G protein-coupled receptor 126##AB183547|GPR126|57211|G protein-coupled receptor 126##AB183548|GPR126|57211|G protein-coupled receptor 126##AB183549|GPR126|57211|G protein-coupled receptor 126##AK307543|GPR126|57211|G protein-coupled receptor 126##AK122617|GPR126|57211|G protein-coupled receptor 126##BX648315|GPR126|57211|G protein-coupled receptor 126##BC013217|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##CR936782|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##NM_006734|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##AK298533|AIG1|51390|androgen-induced 1##AK222475|AIG1|51390|androgen-induced 1##NM_016108|AIG1|51390|androgen-induced 1##BC009559|AIG1|51390|androgen-induced 1##AF153605|AIG1|51390|androgen-induced 1##AK001347|AIG1|51390|androgen-induced 1##BX640703|AIG1|51390|androgen-induced 1	0.999642	0.0	denovo_WM_7:-3:0.298	denovo_WM_7:-4:0.418	denovo_WM_7:-5:0.266
chr7	73617650	73617741	reg1006723.p2	4.749	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	-28992	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	-29054	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-110178	+	NM_014146 NM_032463 NM_032464	6391	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	6587	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	6641	+	AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2	0.0	0.0	
chr8	119100836	119101016	reg1005806.p2	4.749	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-567884	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-567968	+	NM_001172814 NM_173851	-953590	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	23035	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	533199	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	533281	-	BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12	0.988895	0.0	denovo_WM_7:4:0.626	denovo_WM_7:5:0.243
chr10	14993453	14993533	reg1012082.p1	4.748	+	NM_001193424 NM_001193426 BC029360 TSC_hg19_v1_chr10_+_14920864 NM_001193425 NM_001193427 AK222565 AK225369 AK027067 CU688630 BC007754 NM_024670	-72654	+	TSC_hg19_v1_chr10_+_14880343 AF143723 AK292323 AB528152 AB587406	-113122	+	TSC_hg19_v1_chr10_+_14880335 AF112210 BC119690 BC119691	-113155	+	CU692508 TSC_hg19_v1_chr10_-_14996096 BC108276 AK022922 BC022254 AF395747 AF395748 AF395749 AF395750 AF395751 AF395752 AJ296101 BC009185 BX648858 AK021422 AK290598 AK307912 NM_001033855 NM_001033857 NM_001033858 NM_022487	2561	-	NM_001080836	7944	+	NM_001039702 NM_018324 BC050372 AK001844 AK001968	92434	+	NM_001193424|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193426|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC029360|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193425|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193427|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK222565|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK225369|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK027067|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC007754|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_024670|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AF143723|HSPA14|51182|heat shock 70kDa protein 14##AK292323|HSPA14|51182|heat shock 70kDa protein 14##AF112210|HSPA14|51182|heat shock 70kDa protein 14##BC119690|HSPA14|51182|heat shock 70kDa protein 14##BC119691|HSPA14|51182|heat shock 70kDa protein 14##BC108276|DCLRE1C|64421|DNA cross-link repair 1C##AK022922|DCLRE1C|64421|DNA cross-link repair 1C##BC022254|DCLRE1C|64421|DNA cross-link repair 1C##AF395747|DCLRE1C|64421|DNA cross-link repair 1C##AF395748|DCLRE1C|64421|DNA cross-link repair 1C##AF395749|DCLRE1C|64421|DNA cross-link repair 1C##AF395750|DCLRE1C|64421|DNA cross-link repair 1C##AF395751|DCLRE1C|64421|DNA cross-link repair 1C##AF395752|DCLRE1C|64421|DNA cross-link repair 1C##AJ296101|DCLRE1C|64421|DNA cross-link repair 1C##BC009185|DCLRE1C|64421|DNA cross-link repair 1C##BX648858|DCLRE1C|64421|DNA cross-link repair 1C##AK021422|DCLRE1C|64421|DNA cross-link repair 1C##AK290598|DCLRE1C|64421|DNA cross-link repair 1C##AK307912|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033855|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033857|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033858|DCLRE1C|64421|DNA cross-link repair 1C##NM_022487|DCLRE1C|64421|DNA cross-link repair 1C##NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase	1.991643	0.0	denovo_WM_7:-79:0.442	denovo_WM_7:-80:0.295	denovo_WM_7:-95:0.323	denovo_WM_7:-96:0.470
chr1	151273462	151273597	reg1009924.p1	4.748	+	TSC_hg19_v1_chr1_+_151254774 AB037862 BC032463 NM_020832	-18756	+	TSC_hg19_v1_chr1_+_151254004 CR749307	-19487	+	TSC_hg19_v1_chr1_+_151227240 AB033605 BC002365 AB527552	-46282	+	TSC_hg19_v1_chr1_-_151299858 BC000029 AK294606	26321	-	AK311292 NM_001198773 NM_001198775 NM_002651 TSC_hg19_v1_chr1_-_151300134	26620	-	TSC_hg19_v1_chr1_-_151300176 BC040300 NM_001198774	26653	-	AB037862|ZNF687|57592|zinc finger protein 687##BC032463|ZNF687|57592|zinc finger protein 687##NM_020832|ZNF687|57592|zinc finger protein 687##CR749307|ZNF687|57592|zinc finger protein 687##AB033605|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC002365|PSMD4|5710|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4##BC000029|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##AK294606|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##AK311292|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_001198773|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_001198775|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_002651|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##BC040300|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta##NM_001198774|PI4KB|5298|phosphatidylinositol 4-kinase, catalytic, beta	0.0	0.0	
chr1	243891168	243891348	reg1003711.p2	4.748	+	TSC_hg19_v1_chr1_+_243419405 AK297105 AF250731	-471823	+	BC032454 TSC_hg19_v1_chr1_+_243419371 AK299249	-471887	+	TSC_hg19_v1_chr1_+_243419357 AK299212	-471903	+	AF135794 AB463341 AM392791 AM392849 AJ245709 AF124141 AK308052 BC020479 AF085234 AY005799 BC121154 NM_005465 NM_181690	115269	-	AL117525 NM_001206729	115627	-	TSC_hg19_v1_chr1_+_244214553 NM_205768	323298	+	AK297105|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF250731|SDCCAG8|10806|serologically defined colon cancer antigen 8##BC032454|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299249|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299212|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF135794|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392791|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392849|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AJ245709|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF124141|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK308052|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC020479|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF085234|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AY005799|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC121154|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_005465|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_181690|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_205768|ZNF238|10472|zinc finger protein 238	0.0	0.0	
chr14	103074381	103074543	reg1009126.p1	4.748	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-15301	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-15464	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-98348	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	169357	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	169438	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	314536	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.949055	0.0	denovo_WM_7:-59:0.699
chr15	44888709	44888797	reg1004990.p1	4.748	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-59371	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-59411	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-59441	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	67091	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	67127	-	BC036924 NM_001145112	80332	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	0.0	0.0	
chr16	18957407	18957543	reg1010009.p1	4.748	+	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	-19744	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-144693	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-155820	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	37844	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	38083	+	AK315470 NM_016138 TSC_hg19_v1_chr16_+_19078935 BC003185 AK024291	121455	+	NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7##AK315470|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_016138|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC003185|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK024291|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)	0.0	0.0	
chr6	50934361	50934490	reg1010111.p1	4.748	+	NM_003221 BC037225 AK291172 AK313749 AB528472 X95694 DQ891443 DQ894621	-147890	+	AY028376 NM_172238	-253169	+	DQ012016 NM_001037498	-918062	-	AF480064 TSC_hg19_v1_chr6_-_51952394 AY092083 AY074797 NM_138694 NM_170724	1017970	-	NM_002190 U32659 BC066251 BC066252 BC066253 BC067503 BC067504 BC067505 Z58820 AB590712 CU688116	1116781	+	AF384857 JF305974 AB590713 BC070124 NM_052872	1174836	-	NM_003221|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##BC037225|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK291172|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK313749|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##X95694|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ891443|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ894621|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AY028376|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##NM_172238|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##DQ012016|DEFB112|245915|defensin, beta 112##NM_001037498|DEFB112|245915|defensin, beta 112##AF480064|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY092083|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY074797|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_138694|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_170724|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_002190|IL17A|3605|interleukin 17A##U32659|IL17A|3605|interleukin 17A##BC066251|IL17A|3605|interleukin 17A##BC066252|IL17A|3605|interleukin 17A##BC066253|IL17A|3605|interleukin 17A##BC067503|IL17A|3605|interleukin 17A##BC067504|IL17A|3605|interleukin 17A##BC067505|IL17A|3605|interleukin 17A##Z58820|IL17A|3605|interleukin 17A##AF384857|IL17F|112744|interleukin 17F##JF305974|IL17F|112744|interleukin 17F##BC070124|IL17F|112744|interleukin 17F##NM_052872|IL17F|112744|interleukin 17F	0.145402	0.0	
chr11	118973143	118973287	reg1006008.p3	4.747	+	NM_001382 AK095718	-398	-	AK225994 BC000325 BC047771 BC008817 TSC_hg19_v1_chr11_-_118972586 AK301973 AK312783	-657	-	TSC_hg19_v1_chr11_-_118966176 NM_002105 X14850	-7040	-	TSC_hg19_v1_chr11_+_118978097 AB094094 AK025223 NM_014807	4912	+	TSC_hg19_v1_chr11_+_118978191 BC022219	4968	+	NM_001243259 NM_015517 NM_198971 TSC_hg19_v1_chr11_+_118992297 AK300288 BC017234 AK056362 BC012856 AK301452	19068	+	NM_001382|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK095718|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK225994|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC000325|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC047771|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK301973|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK312783|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##NM_002105|H2AFX|3014|H2A histone family, member X##X14850|H2AFX|3014|H2A histone family, member X##AB094094|C2CD2L|9854|C2CD2-like##AK025223|C2CD2L|9854|C2CD2-like##NM_014807|C2CD2L|9854|C2CD2-like##BC022219|C2CD2L|9854|C2CD2-like##NM_001243259|HINFP|25988|histone H4 transcription factor##NM_015517|HINFP|25988|histone H4 transcription factor##NM_198971|HINFP|25988|histone H4 transcription factor##AK300288|HINFP|25988|histone H4 transcription factor##BC017234|HINFP|25988|histone H4 transcription factor##AK056362|HINFP|25988|histone H4 transcription factor##BC012856|HINFP|25988|histone H4 transcription factor##AK301452|HINFP|25988|histone H4 transcription factor	0.0	0.0	
chr1	151566701	151566852	reg1008593.p1	4.747	+	TSC_hg19_v1_chr1_+_151512784 AF254260 NM_001126337 NM_020127 AK075001 AK299263 AK223161 AK298066 AK299925 AK315414 AL136917 AY358610 BC008301 BC002933 AB528295 AM393256 CU678909 DQ893190 DQ893683 DQ896805	-53975	+	NM_020770 AF263462 TSC_hg19_v1_chr1_+_151483892 AB037740 AK290007 BC152445 BC146657	-82880	+	TSC_hg19_v1_chr1_-_151431954 AJ242979 BX537838 NM_001194937 NM_001194938 NM_015100 NM_145796	-134845	-	TSC_hg19_v1_chr1_+_151584550 BC012184 BC101822 BC101824 BC100998 BC101000 NM_030918	17812	+	BC100999 TSC_hg19_v1_chr1_+_151584664	17887	+	TSC_hg19_v1_chr1_+_151584672 AB007957	17922	+	AF254260|TUFT1|7286|tuftelin 1##NM_001126337|TUFT1|7286|tuftelin 1##NM_020127|TUFT1|7286|tuftelin 1##AK075001|TUFT1|7286|tuftelin 1##AK299263|TUFT1|7286|tuftelin 1##AK223161|TUFT1|7286|tuftelin 1##AK298066|TUFT1|7286|tuftelin 1##AK299925|TUFT1|7286|tuftelin 1##AK315414|TUFT1|7286|tuftelin 1##AL136917|TUFT1|7286|tuftelin 1##AY358610|TUFT1|7286|tuftelin 1##BC008301|TUFT1|7286|tuftelin 1##BC002933|TUFT1|7286|tuftelin 1##AM393256|TUFT1|7286|tuftelin 1##DQ893190|TUFT1|7286|tuftelin 1##DQ893683|TUFT1|7286|tuftelin 1##DQ896805|TUFT1|7286|tuftelin 1##NM_020770|CGN|57530|cingulin##AF263462|CGN|57530|cingulin##AB037740|CGN|57530|cingulin##AK290007|CGN|57530|cingulin##BC152445|CGN|57530|cingulin##BC146657|CGN|57530|cingulin##AJ242979|POGZ|23126|pogo transposable element with ZNF domain##BX537838|POGZ|23126|pogo transposable element with ZNF domain##NM_001194937|POGZ|23126|pogo transposable element with ZNF domain##NM_001194938|POGZ|23126|pogo transposable element with ZNF domain##NM_015100|POGZ|23126|pogo transposable element with ZNF domain##NM_145796|POGZ|23126|pogo transposable element with ZNF domain##BC012184|SNX27|81609|sorting nexin family member 27##BC101822|SNX27|81609|sorting nexin family member 27##BC101824|SNX27|81609|sorting nexin family member 27##BC100998|SNX27|81609|sorting nexin family member 27##BC101000|SNX27|81609|sorting nexin family member 27##NM_030918|SNX27|81609|sorting nexin family member 27##BC100999|SNX27|81609|sorting nexin family member 27##AB007957|SNX27|81609|sorting nexin family member 27	0.0	0.998379	CTCF.p2:34:0.998
chr4	71729188	71729295	reg1011073.p1	4.747	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-23604	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-23664	-	AK094806 NM_001098477	-24038	-	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	38872	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	130066	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	130230	+	NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase	0.028821	0.0	
chr8	2241510	2241623	reg1010032.p1	4.747	+	NM_003970 TSC_hg19_v1_chr8_+_1993158 AK297890 BC052969 X69089	-248364	+	TSC_hg19_v1_chr8_+_1952875 AF009203	-288658	+	TSC_hg19_v1_chr8_+_1950340 BC169332	-291214	+	AK128880 TSC_hg19_v1_chr8_-_2585966	344416	-	AY017307 TSC_hg19_v1_chr8_-_4852228	2610659	-	TSC_hg19_v1_chr8_-_4852262 AF333704 NM_033225	2610728	-	NM_003970|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AK297890|MYOM2|9172|myomesin (M-protein) 2, 165kDa##BC052969|MYOM2|9172|myomesin (M-protein) 2, 165kDa##X69089|MYOM2|9172|myomesin (M-protein) 2, 165kDa##AF009203|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##BC169332|KBTBD11|9920|kelch repeat and BTB (POZ) domain containing 11##AY017307|CSMD1|64478|CUB and Sushi multiple domains 1##AF333704|CSMD1|64478|CUB and Sushi multiple domains 1##NM_033225|CSMD1|64478|CUB and Sushi multiple domains 1	0.995607	0.569617	CTCF.p2:-25:0.570	denovo_WM_7:35:0.780
chr1	8455535	8455669	reg1006932.p1	4.746	+	NM_001080397	-71213	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-369204	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-369241	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	28415	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	421990	-	GU170215 NM_001201483	476032	-	NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)	1.475131	0.0	denovo_WM_7:50:0.316	denovo_WM_7:-58:0.449	denovo_WM_7:-59:0.449
chr19	1663233	1663413	reg1010382.p1	4.746	+	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	-10984	-	AB385055 BC110579 BC110580 M31523 NM_001136139	-13058	-	TSC_hg19_v1_chr19_-_1605464 NM_006830	-57850	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	90429	+	TSC_hg19_v1_chr19_+_1776120 AK074606	112864	+	AY302538 NM_001178002 TSC_hg19_v1_chr19_-_1812276 BC035162 NM_138813 AK125225 AK125969	148914	-	M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##NM_001080488|ONECUT3|390874|one cut homeobox 3##AY302538|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_001178002|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##BC035162|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##NM_138813|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125225|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3##AK125969|ATP8B3|148229|ATPase, aminophospholipid transporter, class I, type 8B, member 3	2.009723	0.0	denovo_WM_7:-64:0.968	denovo_WM_7:-79:0.967
chr22	23480143	23480292	reg1009879.p1	4.746	+	AK312519 TSC_hg19_v1_chr22_+_23412728 AK293653	-67488	+	TSC_hg19_v1_chr22_+_23412527 BC037333 BC026342 NM_002073	-67701	+	AJ318021 AJ318022 NM_001178126 AJ319670 BC012159 AJ319671 AJ319669	-250134	+	BC008986 AF133587 NM_014433 AK299530 AK310327	4026	-	AB023061 NM_004914 BC104989 BC104991 CR456553 AF133588 AB527204 AY336745 CU013153 CU013441 AK296052 TSC_hg19_v1_chr22_+_23487674	7387	+	NM_004327 NM_021574 Y00661 TSC_hg19_v1_chr22_+_23522690	42403	+	AK312519|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##AK293653|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##BC037333|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##BC026342|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##NM_002073|GNAZ|2781|guanine nucleotide binding protein (G protein), alpha z polypeptide##AJ318021|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AJ318022|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##NM_001178126|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AJ319670|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##BC012159|IGLC1|3537|immunoglobulin lambda constant 1 (Mcg marker)##AJ319671|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##AJ319669|IGLL5|100423062|immunoglobulin lambda-like polypeptide 5##BC008986|RTDR1|27156|rhabdoid tumor deletion region gene 1##AF133587|RTDR1|27156|rhabdoid tumor deletion region gene 1##NM_014433|RTDR1|27156|rhabdoid tumor deletion region gene 1##AK299530|RTDR1|27156|rhabdoid tumor deletion region gene 1##AK310327|RTDR1|27156|rhabdoid tumor deletion region gene 1##AB023061|RAB36|9609|RAB36, member RAS oncogene family##NM_004914|RAB36|9609|RAB36, member RAS oncogene family##BC104989|RAB36|9609|RAB36, member RAS oncogene family##BC104991|RAB36|9609|RAB36, member RAS oncogene family##CR456553|RAB36|9609|RAB36, member RAS oncogene family##AF133588|RAB36|9609|RAB36, member RAS oncogene family##AY336745|RAB36|9609|RAB36, member RAS oncogene family##CU013153|RAB36|9609|RAB36, member RAS oncogene family##CU013441|RAB36|9609|RAB36, member RAS oncogene family##AK296052|RAB36|9609|RAB36, member RAS oncogene family##NM_004327|BCR|613|breakpoint cluster region##NM_021574|BCR|613|breakpoint cluster region##Y00661|BCR|613|breakpoint cluster region	0.0	0.0	
chr2	37325995	37326099	reg1013085.p1	4.746	+	NM_174931 TSC_hg19_v1_chr2_+_37311662 AK095667 BC071798 AK289504 AK294697	-14400	+	TSC_hg19_v1_chr2_-_37311470 BC150605 NM_019024 AK093937 AX748373	-14555	-	TSC_hg19_v1_chr2_-_37311425 AK096637	-14625	-	AY302136 NM_001135652 BC143228	48910	-	TSC_hg19_v1_chr2_-_37384096 BC022314 BC057805 AK290655	58024	-	TSC_hg19_v1_chr2_-_37384151 BC040851 NM_001135651 NM_002759	58215	-	NM_174931|CCDC75|253635|coiled-coil domain containing 75##AK095667|CCDC75|253635|coiled-coil domain containing 75##BC071798|CCDC75|253635|coiled-coil domain containing 75##AK289504|CCDC75|253635|coiled-coil domain containing 75##AK294697|CCDC75|253635|coiled-coil domain containing 75##BC150605|HEATR5B|54497|HEAT repeat containing 5B##NM_019024|HEATR5B|54497|HEAT repeat containing 5B##AK096637|HEATR5B|54497|HEAT repeat containing 5B##AY302136|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135652|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC143228|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC022314|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC057805|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##AK290655|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC040851|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135651|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_002759|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2	0.467088	0.0	denovo_WM_7:-6:0.255
chr4	30621281	30621433	reg1015186.p1	4.746	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-3758817	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-4035677	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-4129372	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	100642	+	AB006757 TSC_hg19_v1_chr4_+_30722198	100837	+	TSC_hg19_v1_chr4_+_30722465 AB006756	101102	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.988216	0.0	denovo_WM_7:-50:0.340	denovo_WM_7:-51:0.323	denovo_WM_7:-52:0.326
chr7	148888128	148888291	reg1001785.p1	4.746	+	TSC_hg19_v1_chr7_+_148844772 AY049744 AB527270 CU692152	-43450	+	TSC_hg19_v1_chr7_+_148844532 AK026380 NM_170686 BC043295 AK290499	-43680	+	TSC_hg19_v1_chr7_+_148823499 AY049743 NM_020781	-64707	+	D30612 TSC_hg19_v1_chr7_+_148892683 NM_003575 AK299280 BC073805 AK316282 AB587508 BC055287 BC041704	4480	+	TSC_hg19_v1_chr7_+_148936741 AK074821 NM_012256 BC022785 EU446738 CU692712	48585	+	TSC_hg19_v1_chr7_+_148959286 AK131504 NM_001195220 BC131569 AB528912	71111	+	AY049744|ZNF398|57541|zinc finger protein 398##AK026380|ZNF398|57541|zinc finger protein 398##NM_170686|ZNF398|57541|zinc finger protein 398##BC043295|ZNF398|57541|zinc finger protein 398##AK290499|ZNF398|57541|zinc finger protein 398##AY049743|ZNF398|57541|zinc finger protein 398##NM_020781|ZNF398|57541|zinc finger protein 398##D30612|ZNF282|8427|zinc finger protein 282##NM_003575|ZNF282|8427|zinc finger protein 282##AK299280|ZNF282|8427|zinc finger protein 282##BC073805|ZNF282|8427|zinc finger protein 282##AK316282|ZNF282|8427|zinc finger protein 282##BC055287|ZNF282|8427|zinc finger protein 282##BC041704|ZNF282|8427|zinc finger protein 282##AK074821|ZNF212|7988|zinc finger protein 212##NM_012256|ZNF212|7988|zinc finger protein 212##BC022785|ZNF212|7988|zinc finger protein 212##EU446738|ZNF212|7988|zinc finger protein 212##NM_001195220|ZNF783|100289678|zinc finger family member 783	0.0	0.0	
chr15	38997123	38997240	reg1007883.p1	4.745	+	AK093014 AX747856 BC119016 BC119810 NM_207444	-8383	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	-140250	-	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	-250836	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	545744	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	876148	+	AK093308 AX748045 BC045191 NM_152597	1077847	-	AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1	1.984659	0.0	denovo_WM_7:0:0.221	denovo_WM_7:1:0.263	denovo_WM_7:-17:0.220	denovo_WM_7:-18:0.262
chr1	54335432	54335535	reg1007898.p2	4.745	+	AK001269 AL354612 AL354613 TSC_hg19_v1_chr1_-_54304168 BC003082 NM_001168551 NM_018087	-31318	-	DQ141696 AK302910 BX648031 TSC_hg19_v1_chr1_-_54304004 AK298909 AK295000	-31509	-	AK090634 AX746550 NM_147193	-135607	-	AL713668 TSC_hg19_v1_chr1_-_54355462 AK000823 BC064590 AK315183	19952	-	TSC_hg19_v1_chr1_-_54355476 NM_018982	20005	-	AK290780 BC017955 BC107170 BC107171 NM_000792 NM_001039715 NM_001039716 NM_213593 FJ002243 FJ002244 FJ002245 FJ002246 FJ002247 FJ002248 FJ002249 S48220 AY560374 AY560375 AY560376 AY560377 AY560378 AY560379 AY560380 AY560381 AY560382 AY560383	24388	+	AK001269|TMEM48|55706|transmembrane protein 48##AL354612|TMEM48|55706|transmembrane protein 48##AL354613|TMEM48|55706|transmembrane protein 48##BC003082|TMEM48|55706|transmembrane protein 48##NM_001168551|TMEM48|55706|transmembrane protein 48##NM_018087|TMEM48|55706|transmembrane protein 48##DQ141696|TMEM48|55706|transmembrane protein 48##AK302910|TMEM48|55706|transmembrane protein 48##BX648031|TMEM48|55706|transmembrane protein 48##AK298909|TMEM48|55706|transmembrane protein 48##AK295000|TMEM48|55706|transmembrane protein 48##AK090634|GLIS1|148979|GLIS family zinc finger 1##NM_147193|GLIS1|148979|GLIS family zinc finger 1##AL713668|YIPF1|54432|Yip1 domain family, member 1##AK000823|YIPF1|54432|Yip1 domain family, member 1##BC064590|YIPF1|54432|Yip1 domain family, member 1##AK315183|YIPF1|54432|Yip1 domain family, member 1##NM_018982|YIPF1|54432|Yip1 domain family, member 1##AK290780|DIO1|1733|deiodinase, iodothyronine, type I##BC017955|DIO1|1733|deiodinase, iodothyronine, type I##BC107170|DIO1|1733|deiodinase, iodothyronine, type I##BC107171|DIO1|1733|deiodinase, iodothyronine, type I##NM_000792|DIO1|1733|deiodinase, iodothyronine, type I##NM_001039715|DIO1|1733|deiodinase, iodothyronine, type I##NM_001039716|DIO1|1733|deiodinase, iodothyronine, type I##NM_213593|DIO1|1733|deiodinase, iodothyronine, type I##FJ002243|DIO1|1733|deiodinase, iodothyronine, type I##FJ002244|DIO1|1733|deiodinase, iodothyronine, type I##AY560374|DIO1|1733|deiodinase, iodothyronine, type I##AY560375|DIO1|1733|deiodinase, iodothyronine, type I##AY560376|DIO1|1733|deiodinase, iodothyronine, type I##AY560377|DIO1|1733|deiodinase, iodothyronine, type I##AY560378|DIO1|1733|deiodinase, iodothyronine, type I##AY560379|DIO1|1733|deiodinase, iodothyronine, type I##AY560380|DIO1|1733|deiodinase, iodothyronine, type I##AY560381|DIO1|1733|deiodinase, iodothyronine, type I##AY560382|DIO1|1733|deiodinase, iodothyronine, type I##AY560383|DIO1|1733|deiodinase, iodothyronine, type I	1.514195	0.0	denovo_WM_7:69:0.239	denovo_WM_7:70:0.239	denovo_WM_7:71:0.239	denovo_WM_7:72:0.239	denovo_WM_7:-79:0.417
chr19	45507134	45507281	reg1010036.p2	4.745	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-2465	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-48553	+	NM_001294 BC004865 TSC_hg19_v1_chr19_+_45458636 AK074935 AK223553 AF037339 AK075262	-48587	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	35116	+	BC019352 NM_145288	72480	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	75306	+	M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##NM_001294|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC004865|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK074935|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK223553|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AF037339|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK075262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7	1.675433	0.0	denovo_WM_7:-15:0.273	denovo_WM_7:-16:0.222	denovo_WM_7:-34:0.247
chr12	104351266	104351446	reg1000818.p2	4.744	+	TSC_hg19_v1_chr12_-_104350994 BC039467 BC073939 AK024037 BC063467 NM_001135570	-411	-	TSC_hg19_v1_chr12_+_104324215 AB209534 BC009195	-27135	+	TSC_hg19_v1_chr12_+_104324199 BC066656	-27157	+	BC044618 TSC_hg19_v1_chr12_-_104359508	8135	-	TSC_hg19_v1_chr12_+_104359670 NM_003211 AK311673 AK303631 AK309792 BC010945 BC019925 BC037557 AK313234 BC071714 AK299832 BC104477 AB590808	8330	+	AY358763 AK027310 TSC_hg19_v1_chr12_-_104443809	92398	-	BC039467|C12orf73|728568|chromosome 12 open reading frame 73##BC073939|C12orf73|728568|chromosome 12 open reading frame 73##AK024037|C12orf73|728568|chromosome 12 open reading frame 73##BC063467|C12orf73|728568|chromosome 12 open reading frame 73##NM_001135570|C12orf73|728568|chromosome 12 open reading frame 73##AB209534|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC009195|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC066656|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##BC044618|C12orf73|728568|chromosome 12 open reading frame 73##NM_003211|TDG|6996|thymine-DNA glycosylase##AK311673|TDG|6996|thymine-DNA glycosylase##AK303631|TDG|6996|thymine-DNA glycosylase##AK309792|TDG|6996|thymine-DNA glycosylase##BC010945|TDG|6996|thymine-DNA glycosylase##BC019925|TDG|6996|thymine-DNA glycosylase##BC037557|TDG|6996|thymine-DNA glycosylase##AK313234|TDG|6996|thymine-DNA glycosylase##BC071714|TDG|6996|thymine-DNA glycosylase##AK299832|TDG|6996|thymine-DNA glycosylase##BC104477|TDG|6996|thymine-DNA glycosylase##AY358763|GLT8D2|83468|glycosyltransferase 8 domain containing 2##AK027310|GLT8D2|83468|glycosyltransferase 8 domain containing 2	0.0	0.0	
chr19	18090712	18090892	reg1005706.p2	4.744	+	NM_002248 U69883	-28692	+	BC013949 NM_138442	-44898	+	TSC_hg19_v1_chr19_+_18043824 NM_001136203	-46978	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	21148	+	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	28216	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	106930	-	NM_002248|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##U69883|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##BC013949|CCDC124|115098|coiled-coil domain containing 124##NM_138442|CCDC124|115098|coiled-coil domain containing 124##NM_001136203|CCDC124|115098|coiled-coil domain containing 124##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1	1.97583	0.0	denovo_WM_7:58:0.961	denovo_WM_7:77:0.432	denovo_WM_7:78:0.372
chr22	42336165	42336312	reg1010836.p1	4.744	+	EU035297 NM_001110215	-16	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-13439	-	NM_001207020	-25568	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	6885	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	36670	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	58537	+	EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like	0.0	0.0	
chr22	45642696	45642793	reg1009221.p1	4.744	+	TSC_hg19_v1_chr22_-_45636776 AK094937	-5970	-	CU012960 CU013248 CR456402 TSC_hg19_v1_chr22_-_45636622 NM_001009880	-6128	-	AK315883 AK297058 TSC_hg19_v1_chr22_-_45609417	-33376	-	TSC_hg19_v1_chr22_+_45680833 AF085808 BC069544 NM_001167574 NM_006953 BC108900 CR456608 AB010637 AB528272 CU013204 CU013492	38116	+	TSC_hg19_v1_chr22_+_45704858 AK125027 NM_001104595	62206	+	TSC_hg19_v1_chr22_+_45705838 NM_017911 AK000642	63070	+	AK094937|KIAA0930|23313|KIAA0930##CU012960|KIAA0930|23313|KIAA0930##CU013248|KIAA0930|23313|KIAA0930##CR456402|KIAA0930|23313|KIAA0930##NM_001009880|KIAA0930|23313|KIAA0930##AK315883|KIAA0930|23313|KIAA0930##AK297058|KIAA0930|23313|KIAA0930##AF085808|UPK3A|7380|uroplakin 3A##BC069544|UPK3A|7380|uroplakin 3A##NM_001167574|UPK3A|7380|uroplakin 3A##NM_006953|UPK3A|7380|uroplakin 3A##BC108900|UPK3A|7380|uroplakin 3A##CR456608|UPK3A|7380|uroplakin 3A##AB010637|UPK3A|7380|uroplakin 3A##CU013204|UPK3A|7380|uroplakin 3A##CU013492|UPK3A|7380|uroplakin 3A##AK125027|FAM118A|55007|family with sequence similarity 118, member A##NM_001104595|FAM118A|55007|family with sequence similarity 118, member A##NM_017911|FAM118A|55007|family with sequence similarity 118, member A##AK000642|FAM118A|55007|family with sequence similarity 118, member A	0.999816	0.0	denovo_WM_7:-24:0.230	denovo_WM_7:-25:0.230	denovo_WM_7:-26:0.230	denovo_WM_7:-27:0.230
chr3	114528763	114528943	reg1007782.p2	4.744	+	AK225788 NM_001164344 NM_001164345	-50733	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	-185059	-	BC029041 NM_001164347	-185801	-	BC090936 NM_001164343	261387	-	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	337261	-	NM_001130064 NM_002045	813297	+	AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20##BC029041|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164347|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43	0.0	0.0	
chr3	38392765	38392904	reg1009219.p2	4.744	+	TSC_hg19_v1_chr3_+_38388298 AK025728 AK314386 BC030231 BC137076 BC137080 AK293325	-4493	+	TSC_hg19_v1_chr3_+_38388288 BC052984	-4544	+	TSC_hg19_v1_chr3_+_38388285 AB015046 BC039712 NM_005108	-4581	+	TSC_hg19_v1_chr3_+_38495787 NM_001106 BC096243 BC096244 BC096245 BC099642 X77533	102959	+	TSC_hg19_v1_chr3_+_38537830 AK290107 NM_001145464 NM_005107 AB020523 BC104213 BC104212 AK301067 AK308814	144961	+	BC015820 TSC_hg19_v1_chr3_+_38537851 BC065368 AK023235 AK289602	145016	+	AK025728|XYLB|9942|xylulokinase homolog (H. influenzae)##AK314386|XYLB|9942|xylulokinase homolog (H. influenzae)##BC030231|XYLB|9942|xylulokinase homolog (H. influenzae)##BC137076|XYLB|9942|xylulokinase homolog (H. influenzae)##BC137080|XYLB|9942|xylulokinase homolog (H. influenzae)##AK293325|XYLB|9942|xylulokinase homolog (H. influenzae)##BC052984|XYLB|9942|xylulokinase homolog (H. influenzae)##AB015046|XYLB|9942|xylulokinase homolog (H. influenzae)##BC039712|XYLB|9942|xylulokinase homolog (H. influenzae)##NM_005108|XYLB|9942|xylulokinase homolog (H. influenzae)##NM_001106|ACVR2B|93|activin A receptor, type IIB##BC096243|ACVR2B|93|activin A receptor, type IIB##BC096244|ACVR2B|93|activin A receptor, type IIB##BC096245|ACVR2B|93|activin A receptor, type IIB##BC099642|ACVR2B|93|activin A receptor, type IIB##X77533|ACVR2B|93|activin A receptor, type IIB##AK290107|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##NM_001145464|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##NM_005107|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AB020523|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC104213|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC104212|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK301067|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK308814|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC015820|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC065368|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK023235|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK289602|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like	0.0	0.0	
chr5	78028380	78028499	reg1010124.p2	4.744	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-83873	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-183416	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-222243	-	J05225 TSC_hg19_v1_chr5_-_78281101	252649	-	AK290865 TSC_hg19_v1_chr5_-_78281134	252694	-	TSC_hg19_v1_chr5_-_78281142 AK314903	252707	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	1.445085	0.0	denovo_WM_7:19:0.388	denovo_WM_7:34:0.432
chr12	55059196	55059319	reg1010605.p1	4.743	+	AY590150 AF144011 BC062682 BC069108 NM_053283 EF503687 EF503688 EF503689	-17052	-	CU686745 CU687522 AF238867 BC069317 NM_033277 BC062217	-30606	-	CR457003 AY063766 U48707 TSC_hg19_v1_chr12_-_54982398 BC022470 NM_006741 AK123969	-76893	-	NM_058173 AF414087 AY359062 BC111421 AY651259	189075	+	BC132732 BC132734 NM_001098815	316364	-	AK303223 NM_001136030 TSC_hg19_v1_chr12_-_55378533	319245	-	AY590150|DCD|117159|dermcidin##AF144011|DCD|117159|dermcidin##BC062682|DCD|117159|dermcidin##BC069108|DCD|117159|dermcidin##NM_053283|DCD|117159|dermcidin##EF503687|DCD|117159|dermcidin##EF503688|DCD|117159|dermcidin##EF503689|DCD|117159|dermcidin##AF238867|LACRT|90070|lacritin##BC069317|LACRT|90070|lacritin##NM_033277|LACRT|90070|lacritin##BC062217|LACRT|90070|lacritin##CR457003|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##AY063766|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##U48707|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##BC022470|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##NM_006741|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##AK123969|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##NM_058173|MUCL1|118430|mucin-like 1##AF414087|MUCL1|118430|mucin-like 1##AY359062|MUCL1|118430|mucin-like 1##BC111421|MUCL1|118430|mucin-like 1##AY651259|MUCL1|118430|mucin-like 1##BC132732|KIAA0748|9840|KIAA0748##BC132734|KIAA0748|9840|KIAA0748##NM_001098815|KIAA0748|9840|KIAA0748##AK303223|KIAA0748|9840|KIAA0748##NM_001136030|KIAA0748|9840|KIAA0748	0.0	0.0	
chr12	57606981	57607080	reg1001875.p1	4.743	+	TSC_hg19_v1_chr12_+_57522452 BC045107	-84567	+	TSC_hg19_v1_chr12_+_57522265 BC052593 BC072015 NM_002332 X13916	-84748	+	TSC_hg19_v1_chr12_-_57505177 NM_001178078 NM_001178080 NM_001178081 NM_003153	-101833	-	AY358614 NM_007224 TSC_hg19_v1_chr12_+_57610601 BC036679 AK094231 AK290949 BC053581 CU690992	3634	+	NM_001166356 NM_005412 TSC_hg19_v1_chr12_+_57623504 AK055053 AK223555 AK298231 AK301339 AK303827 BC032584 BC044211 AK295941 BC008066 BC012833 BC011911 BC091501 CU680112 CU689432 AB527799 BT006866 DQ891309 DQ894430	16428	+	NM_001166358 BX647711 AK301443 TSC_hg19_v1_chr12_+_57623972 BX648847 NM_001166359 NM_001166357 BC004189 BC004215 BC008711 AK296183 AK297173 AK315916	16958	+	BC045107|LRP1|4035|low density lipoprotein receptor-related protein 1##BC052593|LRP1|4035|low density lipoprotein receptor-related protein 1##BC072015|LRP1|4035|low density lipoprotein receptor-related protein 1##NM_002332|LRP1|4035|low density lipoprotein receptor-related protein 1##X13916|LRP1|4035|low density lipoprotein receptor-related protein 1##NM_001178078|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_001178080|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_001178081|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_003153|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AY358614|NXPH4|11247|neurexophilin 4##NM_007224|NXPH4|11247|neurexophilin 4##BC036679|NXPH4|11247|neurexophilin 4##AK094231|NXPH4|11247|neurexophilin 4##AK290949|NXPH4|11247|neurexophilin 4##BC053581|NXPH4|11247|neurexophilin 4##NM_001166356|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_005412|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK055053|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK223555|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK298231|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK301339|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK303827|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC032584|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC044211|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK295941|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC008066|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC011911|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC091501|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BT006866|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##DQ891309|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##DQ894430|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166358|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BX647711|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK301443|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BX648847|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166359|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166357|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC008711|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK296183|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK297173|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK315916|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)	0.973822	0.0	
chr17	73422800	73422910	reg1004935.p2	4.743	+	NM_002086 NM_203506 TSC_hg19_v1_chr17_-_73401791	-21052	-	TSC_hg19_v1_chr17_-_73401781 AK315565	-21076	-	TSC_hg19_v1_chr17_-_73401738 BC000631	-21121	-	NM_014738 TSC_hg19_v1_chr17_+_73452737 AK308160 BC042942 AK304819 D83779 BC045540	29883	+	AK316060 TSC_hg19_v1_chr17_+_73472617 AK294526 CR936809	49747	+	AK300354 NM_001142643 AK315936	83086	-	NM_002086|GRB2|2885|growth factor receptor-bound protein 2##NM_203506|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##NM_014738|KIAA0195|9772|KIAA0195##AK308160|KIAA0195|9772|KIAA0195##BC042942|KIAA0195|9772|KIAA0195##AK304819|KIAA0195|9772|KIAA0195##D83779|KIAA0195|9772|KIAA0195##BC045540|KIAA0195|9772|KIAA0195##AK316060|KIAA0195|9772|KIAA0195##AK294526|KIAA0195|9772|KIAA0195##CR936809|KIAA0195|9772|KIAA0195##AK300354|CASKIN2|57513|CASK interacting protein 2##NM_001142643|CASKIN2|57513|CASK interacting protein 2##AK315936|CASKIN2|57513|CASK interacting protein 2	0.988772	0.0	denovo_WM_7:12:0.978
chr20	5632240	5632393	reg1012756.p1	4.743	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-40729	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-337280	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-524621	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	98750	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	259810	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	298807	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.99985	0.0	
chr3	48236231	48236408	reg1007412.p2	4.743	+	BC007401 BC018642 NM_001789 NM_201567 TSC_hg19_v1_chr3_-_48229900 M81933	-6460	-	AF277722 AY137580 EU812118 CU675643 AB590275 DQ890753 DQ892919 DQ896168 AK290554 TSC_hg19_v1_chr3_-_48229511	-6891	-	TSC_hg19_v1_chr3_-_48130743 AK054577 NM_001134364 NM_002375 NM_030885	-105619	-	NM_004345 BC055089 X89658 U19970 CU691114 AB590666 AY251531 Z38026 AY162210 CR457083 CR541961	28599	+	TSC_hg19_v1_chr3_+_48282593 BC028160 BC062690 AK298782 AY258146 NM_016089 AL832831 BC006247 BC048798 BC005859 AF114816 AF114817 AB463372	46291	+	DQ892283 DQ895483 AK308970 AF051941 TSC_hg19_v1_chr3_-_48342858 U90449 BC001808 BC012828 NM_005793 AK222555 AK294809 AK307332 AK297364 AK309090	106532	-	BC007401|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##BC018642|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##NM_001789|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##NM_201567|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##M81933|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AF277722|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AY137580|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##EU812118|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ890753|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ892919|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ896168|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK290554|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK054577|MAP4|4134|microtubule-associated protein 4##NM_001134364|MAP4|4134|microtubule-associated protein 4##NM_002375|MAP4|4134|microtubule-associated protein 4##NM_030885|MAP4|4134|microtubule-associated protein 4##NM_004345|CAMP|820|cathelicidin antimicrobial peptide##BC055089|CAMP|820|cathelicidin antimicrobial peptide##X89658|CAMP|820|cathelicidin antimicrobial peptide##U19970|CAMP|820|cathelicidin antimicrobial peptide##AY251531|CAMP|820|cathelicidin antimicrobial peptide##Z38026|CAMP|820|cathelicidin antimicrobial peptide##AY162210|CAMP|820|cathelicidin antimicrobial peptide##CR457083|CAMP|820|cathelicidin antimicrobial peptide##CR541961|CAMP|820|cathelicidin antimicrobial peptide##BC028160|ZNF589|51385|zinc finger protein 589##BC062690|ZNF589|51385|zinc finger protein 589##AK298782|ZNF589|51385|zinc finger protein 589##AY258146|ZNF589|51385|zinc finger protein 589##NM_016089|ZNF589|51385|zinc finger protein 589##AL832831|ZNF589|51385|zinc finger protein 589##BC006247|ZNF589|51385|zinc finger protein 589##BC048798|ZNF589|51385|zinc finger protein 589##BC005859|ZNF589|51385|zinc finger protein 589##AF114816|ZNF589|51385|zinc finger protein 589##AF114817|ZNF589|51385|zinc finger protein 589##DQ892283|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##DQ895483|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK308970|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AF051941|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##U90449|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##BC001808|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##BC012828|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##NM_005793|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK222555|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK294809|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)##AK297364|NME6|10201|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	0.998997	0.0	denovo_WM_7:1:0.310	denovo_WM_7:2:0.310	denovo_WM_7:3:0.310
chr5	142826480	142826637	reg1010007.p1	4.743	+	NM_001018074 NM_001018075 NM_001018077	-11482	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-42392	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-42526	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	365200	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	723577	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	723618	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr6	150328401	150328484	reg1004577.p2	4.742	+	AK292519 AK316582 TSC_hg19_v1_chr6_+_150285142 BC035416 NM_025218 AB052907 AF304377 AF346416 AF425265 AF346595	-43280	+	AK299895 AB052906 NM_025217 TSC_hg19_v1_chr6_+_150263162 AX772820 BC034689 AY358665 AF304378 AY026825 CU689938	-65278	+	AY172580 BC096719 BC098152 AY172579 NM_001001788 AK310157	-84242	-	BC131600 AB528849 AY039682 NM_130900	18191	-	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	61771	-	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	135799	+	AK292519|ULBP1|80329|UL16 binding protein 1##AK316582|ULBP1|80329|UL16 binding protein 1##BC035416|ULBP1|80329|UL16 binding protein 1##NM_025218|ULBP1|80329|UL16 binding protein 1##AB052907|ULBP1|80329|UL16 binding protein 1##AF304377|ULBP1|80329|UL16 binding protein 1##AF346416|ULBP1|80329|UL16 binding protein 1##AF425265|ULBP1|80329|UL16 binding protein 1##AF346595|ULBP1|80329|UL16 binding protein 1##AK299895|ULBP2|80328|UL16 binding protein 2##AB052906|ULBP2|80328|UL16 binding protein 2##NM_025217|ULBP2|80328|UL16 binding protein 2##AX772820|ULBP2|80328|UL16 binding protein 2##BC034689|ULBP2|80328|UL16 binding protein 2##AY358665|ULBP2|80328|UL16 binding protein 2##AF304378|ULBP2|80328|UL16 binding protein 2##AY026825|ULBP2|80328|UL16 binding protein 2##AY172580|RAET1G|353091|retinoic acid early transcript 1G##BC096719|RAET1G|353091|retinoic acid early transcript 1G##BC098152|RAET1G|353091|retinoic acid early transcript 1G##AY172579|RAET1G|353091|retinoic acid early transcript 1G##NM_001001788|RAET1G|353091|retinoic acid early transcript 1G##AK310157|RAET1G|353091|retinoic acid early transcript 1G##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C	0.914441	0.931687	CTCF.p2:9:0.932	denovo_WM_7:66:0.255	denovo_WM_7:67:0.285
chrX	1361782	1361886	reg1012696.p1	4.742	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-30250	-	NM_000451 NM_006883 U89331	-776756	+	AK293506 NM_013239	-1014145	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	25880	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	39749	+	BC035407 NM_002183	93674	+	AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)	0.995151	0.0	denovo_WM_7:-23:0.971
chr21	43342175	43342327	reg1012365.p1	4.741	+	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-42753	-	AK027424 TSC_hg19_v1_chr21_-_43187270	-154984	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-155029	-	BC062323 AL833323 NM_199050	4538	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	31832	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	88220	-	AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295	0.981471	0.489752	denovo_WM_7:27:0.873	CTCF.p2:-55:0.490
chr14	24863649	24863745	reg1011536.p2	4.740	+	AK302271 NM_001198966 AK310433 EU887644 EU887645 EU887646 EU887647 EU887648 EU887649 AK300450	-25322	+	NM_001198965 NM_004554 BC037735 AK293185 TSC_hg19_v1_chr14_+_24837389 AK311078 AK311425 L41066 BC053855 AB527875 EU446638 EU887641 EU887642 EU887643	-26312	+	AK310445 EU887632 EU887633 EU887634 NM_001136022 NM_001198967	-27553	+	TSC_hg19_v1_chr14_+_24868230 BC065283 NM_025081 AK021873	4559	+	AY359070 NM_001039771	35033	-	TSC_hg19_v1_chr14_+_24899159 NM_015299 AK291680 BX161465 BC042554	35473	+	AK302271|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198966|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK310433|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887644|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887645|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887646|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887647|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887648|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887649|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK300450|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198965|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_004554|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC037735|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK293185|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311078|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK311425|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##L41066|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC053855|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU446638|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887641|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887642|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887643|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##AK310445|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887632|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887633|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##EU887634|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001136022|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##NM_001198967|NFATC4|4776|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4##BC065283|NYNRIN|57523|NYN domain and retroviral integrase containing##NM_025081|NYNRIN|57523|NYN domain and retroviral integrase containing##AK021873|NYNRIN|57523|NYN domain and retroviral integrase containing##AY359070|CBLN3|643866|cerebellin 3 precursor##NM_001039771|CBLN3|643866|cerebellin 3 precursor##NM_015299|KHNYN|23351|KH and NYN domain containing##AK291680|KHNYN|23351|KH and NYN domain containing##BX161465|KHNYN|23351|KH and NYN domain containing##BC042554|KHNYN|23351|KH and NYN domain containing	0.999901	0.0	denovo_WM_7:23:0.457	denovo_WM_7:24:0.457
chr16	85660501	85660646	reg1014274.p1	4.740	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	-13620	+	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	-15552	+	BC093665 BC111944 AK126284 NM_198491	-514519	-	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	61969	-	BC003186 NM_016095 TSC_hg19_v1_chr16_-_85722590	62026	-	TSC_hg19_v1_chr16_-_85784703 NM_206967	124115	-	NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC003186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_016095|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_206967|C16orf74|404550|chromosome 16 open reading frame 74	1.99415	0.0	denovo_WM_7:84:0.424	denovo_WM_7:85:0.290	denovo_WM_7:100:0.293	denovo_WM_7:101:0.427
chr7	69371402	69371546	reg1011490.p2	4.740	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-306886	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-307145	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-307638	+	TSC_hg19_v1_chr7_+_70231164 AK296981	859731	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1226314	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2430304	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.0	0.0	
chr16	87898787	87898902	reg1008589.p2	4.739	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-99274	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-99329	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-262134	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	4231	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	71303	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	86324	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.245131	0.0	
chr17	21248882	21248995	reg1007716.p1	4.739	+	NM_002756	-57591	+	BC032478 TSC_hg19_v1_chr17_+_21188087 AK093838 AK223490 D87116 CU689390 DQ894188 AB451226 AB451349 CR536514 CR541793 GQ225578	-60806	+	TSC_hg19_v1_chr17_+_21188022 AK315505	-60914	+	TSC_hg19_v1_chr17_+_21279667 BC027982 NM_021012	30744	+	FJ434338 NM_001194958	59509	+	TSC_hg19_v1_chr17_-_21454933 AK056436 BC132738 BC136630 BC019938 BC010612 BC052777 BC053952 NM_001113434	205985	-	NM_002756|MAP2K3|5606|mitogen-activated protein kinase kinase 3##BC032478|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK093838|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK223490|MAP2K3|5606|mitogen-activated protein kinase kinase 3##D87116|MAP2K3|5606|mitogen-activated protein kinase kinase 3##DQ894188|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AB451226|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AB451349|MAP2K3|5606|mitogen-activated protein kinase kinase 3##CR536514|MAP2K3|5606|mitogen-activated protein kinase kinase 3##CR541793|MAP2K3|5606|mitogen-activated protein kinase kinase 3##GQ225578|MAP2K3|5606|mitogen-activated protein kinase kinase 3##AK315505|MAP2K3|5606|mitogen-activated protein kinase kinase 3##BC027982|KCNJ12|3768|potassium inwardly-rectifying channel, subfamily J, member 12##NM_021012|KCNJ12|3768|potassium inwardly-rectifying channel, subfamily J, member 12##FJ434338|KCNJ18|100134444|potassium inwardly-rectifying channel, subfamily J, member 18##NM_001194958|KCNJ18|100134444|potassium inwardly-rectifying channel, subfamily J, member 18##AK056436|C17orf51|339263|chromosome 17 open reading frame 51##BC132738|C17orf51|339263|chromosome 17 open reading frame 51##BC136630|C17orf51|339263|chromosome 17 open reading frame 51##BC019938|C17orf51|339263|chromosome 17 open reading frame 51##BC010612|C17orf51|339263|chromosome 17 open reading frame 51##BC052777|C17orf51|339263|chromosome 17 open reading frame 51##BC053952|C17orf51|339263|chromosome 17 open reading frame 51##NM_001113434|C17orf51|339263|chromosome 17 open reading frame 51	0.99495	0.0	
chr18	12948376	12948526	reg1007021.p1	4.739	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-387	+	TSC_hg19_v1_chr18_+_12948009 AK314403	-445	+	TSC_hg19_v1_chr18_+_12947986 NM_001013437 NM_031216	-466	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	42894	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	270334	+	NM_001003674 NM_001003675	663213	+	AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##AK314403|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001013437|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_031216|SEH1L|81929|SEH1-like (S. cerevisiae)##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1	0.0	0.0	
chr19	35168885	35168999	reg1009975.p1	4.739	+	TSC_hg19_v1_chr19_+_35168582 AL834318 NM_001012320 NM_018443 AK074901 AF155656 AK315241 AF190157 AK297551 AK131278 BC024176 AF265236 AF326206	-293	+	BC093909 BC093935 NM_001025591	-83453	-	TSC_hg19_v1_chr19_+_34972869 NM_001080436	-196070	+	TSC_hg19_v1_chr19_+_35225102 BC043228	56156	+	TSC_hg19_v1_chr19_+_35225150 AK295492	56214	+	NM_001029997 NM_001145665	56537	+	AL834318|ZNF302|55900|zinc finger protein 302##NM_001012320|ZNF302|55900|zinc finger protein 302##NM_018443|ZNF302|55900|zinc finger protein 302##AK074901|ZNF302|55900|zinc finger protein 302##AF155656|ZNF302|55900|zinc finger protein 302##AK315241|ZNF302|55900|zinc finger protein 302##AF190157|ZNF302|55900|zinc finger protein 302##AK131278|ZNF302|55900|zinc finger protein 302##BC024176|ZNF302|55900|zinc finger protein 302##AF265236|ZNF302|55900|zinc finger protein 302##AF326206|ZNF302|55900|zinc finger protein 302##BC093909|SCGBL|284402|secretoglobin-like##BC093935|SCGBL|284402|secretoglobin-like##NM_001025591|SCGBL|284402|secretoglobin-like##NM_001080436|WTIP|126374|Wilms tumor 1 interacting protein##BC043228|ZNF181|339318|zinc finger protein 181##AK295492|ZNF181|339318|zinc finger protein 181##NM_001029997|ZNF181|339318|zinc finger protein 181##NM_001145665|ZNF181|339318|zinc finger protein 181	0.0	0.0	
chr6	131101229	131101346	reg1011953.p1	4.739	+	AB052099 NM_052913	-343026	+	AK091882 AX747235 NM_001017373	-557189	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	-564832	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	47275	+	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	190264	-	CR749262 CR936793 NM_001252660	220600	-	AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2	0.998743	0.0	denovo_WM_7:17:0.239	denovo_WM_7:20:0.378	denovo_WM_7:21:0.244
chr7	70294434	70294614	reg1000432.p2	4.739	+	TSC_hg19_v1_chr7_+_70231164 AK296981	-63319	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1229936	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1230195	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	303264	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1507254	-	NM_001017440 TSC_hg19_v1_chr7_-_71802376	1507780	-	AK296981|AUTS2|26053|autism susceptibility candidate 2##BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1##NM_001017440|CALN1|83698|calneuron 1	0.0	0.0	
chr9	126959974	126960154	reg1005442.p1	4.739	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-185993	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-186181	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-267753	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	59946	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	60181	+	TSC_hg19_v1_chr9_+_127020255 AB026289	60200	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.0	0.0	
chr12	64428761	64428905	reg1009211.p1	4.738	+	TSC_hg19_v1_chr12_+_64238511 BC053903 NM_020762 BC029919	-190287	+	TSC_hg19_v1_chr12_+_64237847 BC065032	-191107	+	BX647105 BX647419 TSC_hg19_v1_chr12_+_64173925	-254898	+	BC071634 AK057111 BC036246 AK129933 NM_152440	187220	-	BC039369 NM_001099676 NM_001170633	355484	-	TSC_hg19_v1_chr12_+_64798240 NM_007235 AK308108 AK292884	369413	+	BC053903|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##NM_020762|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BC029919|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BX647105|TMEM5|10329|transmembrane protein 5##BX647419|TMEM5|10329|transmembrane protein 5##BC071634|C12orf66|144577|chromosome 12 open reading frame 66##AK057111|C12orf66|144577|chromosome 12 open reading frame 66##BC036246|C12orf66|144577|chromosome 12 open reading frame 66##AK129933|C12orf66|144577|chromosome 12 open reading frame 66##NM_152440|C12orf66|144577|chromosome 12 open reading frame 66##BC039369|C12orf56|115749|chromosome 12 open reading frame 56##NM_001099676|C12orf56|115749|chromosome 12 open reading frame 56##NM_001170633|C12orf56|115749|chromosome 12 open reading frame 56##NM_007235|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AK308108|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AK292884|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)	1.785644	0.0	denovo_WM_7:0:0.203	denovo_WM_7:0:0.353	denovo_WM_7:-2:0.223	denovo_WM_7:14:0.401	denovo_WM_7:15:0.253
chr13	31039168	31039260	reg1011631.p3	4.738	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-157645	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-158063	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-614373	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	779	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	844	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	152413	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	0.026821	0.0	
chr20	35469757	35469923	reg1009093.p2	4.738	+	TSC_hg19_v1_chr20_-_35444558 AK131491	-25220	-	AK057056 TSC_hg19_v1_chr20_-_35407842	-62064	-	TSC_hg19_v1_chr20_-_35402167 BC035821 AK093031 AX747868 AK290738 NM_001145316 NM_024918 AK301671 AK301840 BC058899 AK023408 BC026011 NM_001145315 NM_001145317 NM_001145318	-67655	-	AK126630 NM_199181	18435	-	TSC_hg19_v1_chr20_-_35492072 NM_080627	22294	-	TSC_hg19_v1_chr20_+_35504544 BC127688 BC130646 BC130648 AK123544 NM_080628 HQ258755	34709	+	AK131491|KIAA0889|140710|KIAA0889##AK057056|KIAA0889|140710|KIAA0889##BC035821|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK093031|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK290738|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145316|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_024918|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301671|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301840|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC058899|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK023408|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC026011|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145315|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145317|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145318|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK126630|KIAA0889|140710|KIAA0889##NM_199181|KIAA0889|140710|KIAA0889##NM_080627|KIAA0889|140710|KIAA0889##BC127688|C20orf118|140711|chromosome 20 open reading frame 118##BC130646|C20orf118|140711|chromosome 20 open reading frame 118##BC130648|C20orf118|140711|chromosome 20 open reading frame 118##AK123544|C20orf118|140711|chromosome 20 open reading frame 118##NM_080628|C20orf118|140711|chromosome 20 open reading frame 118##HQ258755|C20orf118|140711|chromosome 20 open reading frame 118	0.88091	0.0	denovo_WM_7:-104:0.881
chr2	198083282	198083376	reg1002060.p1	4.738	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-291885	-	BC137150 BC137151 AY358249 NM_213608	-408392	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-418916	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	92053	-	TSC_hg19_v1_chr2_-_198175459 BC063622	92144	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	92190	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.0	0.0	
chr2	203534761	203534841	reg1008823.p1	4.738	+	AB053315 TSC_hg19_v1_chr2_+_203500263	-34564	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	-34942	+	TSC_hg19_v1_chr2_+_203499703 AK096090	-35112	+	AK055978 AB053316 TSC_hg19_v1_chr2_-_203736166	201277	-	TSC_hg19_v1_chr2_-_203736185 NM_178231	201388	-	TSC_hg19_v1_chr2_-_203736227 AL833904 BC063876 NM_138468	201495	-	AB053315|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B##AK096090|FAM117B|150864|family with sequence similarity 117, member B##AK055978|ICA1L|130026|islet cell autoantigen 1,69kDa-like##AB053316|ICA1L|130026|islet cell autoantigen 1,69kDa-like##NM_178231|ICA1L|130026|islet cell autoantigen 1,69kDa-like##AL833904|ICA1L|130026|islet cell autoantigen 1,69kDa-like##BC063876|ICA1L|130026|islet cell autoantigen 1,69kDa-like##NM_138468|ICA1L|130026|islet cell autoantigen 1,69kDa-like	0.0	0.0	
chr6	5507334	5507476	reg1005062.p1	4.738	+	TSC_hg19_v1_chr6_+_5261758 NM_006567 AK223423 BC020239 BC021112 BC014273	-245715	+	TSC_hg19_v1_chr6_+_5261294 AK312454	-246143	+	TSC_hg19_v1_chr6_-_5261177 NM_001164840 NM_001164841 NM_020408	-246239	-	AJ420483 TSC_hg19_v1_chr6_-_6007133 BC002683 AF136631 AF114833 AK314095	499736	-	BC042019 NM_016588 TSC_hg19_v1_chr6_-_6007752	500292	-	AB208852 BC027963 M14354 M14539 TSC_hg19_v1_chr6_-_6320896 AK304335 AK312735	813480	-	NM_006567|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK223423|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC020239|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##BC021112|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##AK312454|FARS2|10667|phenylalanyl-tRNA synthetase 2, mitochondrial##NM_001164840|LYRM4|57128|LYR motif containing 4##NM_001164841|LYRM4|57128|LYR motif containing 4##NM_020408|LYRM4|57128|LYR motif containing 4##AJ420483|NRN1|51299|neuritin 1##BC002683|NRN1|51299|neuritin 1##AF136631|NRN1|51299|neuritin 1##AF114833|NRN1|51299|neuritin 1##AK314095|NRN1|51299|neuritin 1##BC042019|NRN1|51299|neuritin 1##NM_016588|NRN1|51299|neuritin 1##AB208852|F13A1|2162|coagulation factor XIII, A1 polypeptide##BC027963|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14354|F13A1|2162|coagulation factor XIII, A1 polypeptide##M14539|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK304335|F13A1|2162|coagulation factor XIII, A1 polypeptide##AK312735|F13A1|2162|coagulation factor XIII, A1 polypeptide	0.0	0.0	
chr9	127050063	127050189	reg1011919.p1	4.738	+	TSC_hg19_v1_chr9_+_127020588 AL832574	-29536	+	TSC_hg19_v1_chr9_+_127020519 NM_001166168 AK313071	-29603	+	TSC_hg19_v1_chr9_+_127020255 AB026289	-29862	+	TSC_hg19_v1_chr9_+_127054267 NM_001166170 NM_001166171	4133	+	TSC_hg19_v1_chr9_+_127054570 AK294614 NM_001166169	4506	+	TSC_hg19_v1_chr9_+_127119114 BC042968	69043	+	NM_001166168|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK313071|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166170|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166171|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK294614|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166169|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.991972	0.0	denovo_WM_7:-15:0.464	denovo_WM_7:-16:0.464
chr16	26696520	26696586	reg1012933.p1	4.737	+	AF105378 NM_006040	-993207	+	TSC_hg19_v1_chr16_-_25269141 AK303472	-1427348	-	BX648785 AK131342 NM_001012981 AK302399	-1427694	-	NM_001145545 BC031257 AK311574	381694	+	NM_024773 AK023860 BC027911 AK310885 TSC_hg19_v1_chr16_+_27214846 AK225066	518274	+	AK297166 NM_001145348	518742	+	AF105378|HS3ST4|9951|heparan sulfate (glucosamine) 3-O-sulfotransferase 4##NM_006040|HS3ST4|9951|heparan sulfate (glucosamine) 3-O-sulfotransferase 4##AK303472|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##BX648785|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK131342|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##NM_001012981|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##AK302399|ZKSCAN2|342357|zinc finger with KRAB and SCAN domains 2##NM_001145545|C16orf82|162083|chromosome 16 open reading frame 82##BC031257|C16orf82|162083|chromosome 16 open reading frame 82##AK311574|C16orf82|162083|chromosome 16 open reading frame 82##NM_024773|JMJD5|79831|jumonji domain containing 5##AK023860|JMJD5|79831|jumonji domain containing 5##BC027911|JMJD5|79831|jumonji domain containing 5##AK310885|JMJD5|79831|jumonji domain containing 5##AK225066|JMJD5|79831|jumonji domain containing 5##AK297166|JMJD5|79831|jumonji domain containing 5##NM_001145348|JMJD5|79831|jumonji domain containing 5	0.0	0.0	
chr19	17863750	17863881	reg1010898.p2	4.737	+	NM_001161359 NM_015122 TSC_hg19_v1_chr19_+_17862326 AK316458 BC041130	-1499	+	TSC_hg19_v1_chr19_+_17858564 NM_001161357 NM_001161358 AK291410 BC028021	-5264	+	DQ387861 NM_018174 AL834233 BC067115 TSC_hg19_v1_chr19_+_17830310 BC080547 AJ440784 AK027623 BC113952 AK308975	-33506	+	TSC_hg19_v1_chr19_+_17905918 NM_014256	42101	+	TSC_hg19_v1_chr19_+_17905971 AK075466 AK314323 AK075434 AB015630 AK225421 AB049585 AY358955 BC066876 BC067423 AK225478	42144	+	BC032810 BC040435 BC053345 BC061886 BC106721 BC071706 BC106722 NM_005543 S72482 AK302780 AY082014	68532	-	NM_001161359|FCHO1|23149|FCH domain only 1##NM_015122|FCHO1|23149|FCH domain only 1##AK316458|FCHO1|23149|FCH domain only 1##BC041130|FCHO1|23149|FCH domain only 1##NM_001161357|FCHO1|23149|FCH domain only 1##NM_001161358|FCHO1|23149|FCH domain only 1##AK291410|FCHO1|23149|FCH domain only 1##BC028021|FCHO1|23149|FCH domain only 1##DQ387861|MAP1S|55201|microtubule-associated protein 1S##NM_018174|MAP1S|55201|microtubule-associated protein 1S##AL834233|MAP1S|55201|microtubule-associated protein 1S##BC067115|MAP1S|55201|microtubule-associated protein 1S##BC080547|MAP1S|55201|microtubule-associated protein 1S##AJ440784|MAP1S|55201|microtubule-associated protein 1S##AK027623|MAP1S|55201|microtubule-associated protein 1S##BC113952|MAP1S|55201|microtubule-associated protein 1S##AK308975|MAP1S|55201|microtubule-associated protein 1S##NM_014256|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK075466|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK314323|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK075434|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AB015630|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK225421|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AB049585|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AY358955|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC066876|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC067423|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK225478|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC032810|INSL3|3640|insulin-like 3 (Leydig cell)##BC040435|INSL3|3640|insulin-like 3 (Leydig cell)##BC053345|INSL3|3640|insulin-like 3 (Leydig cell)##BC061886|INSL3|3640|insulin-like 3 (Leydig cell)##BC106721|INSL3|3640|insulin-like 3 (Leydig cell)##BC071706|INSL3|3640|insulin-like 3 (Leydig cell)##BC106722|INSL3|3640|insulin-like 3 (Leydig cell)##NM_005543|INSL3|3640|insulin-like 3 (Leydig cell)##S72482|INSL3|3640|insulin-like 3 (Leydig cell)##AK302780|INSL3|3640|insulin-like 3 (Leydig cell)##AY082014|INSL3|3640|insulin-like 3 (Leydig cell)	1.981376	0.0	denovo_WM_7:83:0.895	denovo_WM_7:-86:0.240	denovo_WM_7:-87:0.240	denovo_WM_7:-88:0.438
chr22	42815877	42816012	reg1003573.p2	4.737	+	BC038245 TSC_hg19_v1_chr22_-_42765218	-50742	-	AB527391 NM_005650 NM_181492	-204567	-	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-289063	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	12437	-	BC031838 TSC_hg19_v1_chr22_-_42915796 BC041639 BC042335 AB527998 AK314650	99823	-	TSC_hg19_v1_chr22_-_42915803 BC073834 BC064560 BC035992 BC121118 BC121119 NM_015703	99870	-	NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC031838|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC041639|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC042335|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK314650|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC073834|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC064560|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC035992|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121118|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC121119|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##NM_015703|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)	1.986151	0.0	denovo_WM_7:59:0.246	denovo_WM_7:60:0.211	denovo_WM_7:79:0.208	denovo_WM_7:80:0.243
chr3	156383111	156383227	reg1003650.p2	4.736	+	TSC_hg19_v1_chr3_-_156272919 AF087907 AF110647 BC017203 NM_007107	-110226	-	TSC_hg19_v1_chr3_-_156272894 BT006669 DQ892572 DQ895788 AK304364 AK312935	-110288	-	NM_172159 BC043166 AK127240	-374359	+	NM_015508	9035	+	AK291261 TSC_hg19_v1_chr3_+_156392402 BX537965 BC050350	9233	+	CR749647 NM_001184717	9545	+	AF087907|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AF110647|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BC017203|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_007107|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##BT006669|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ892572|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##DQ895788|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK304364|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##AK312935|SSR3|6747|signal sequence receptor, gamma (translocon-associated protein gamma)##NM_172159|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##BC043166|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##AK127240|KCNAB1|7881|potassium voltage-gated channel, shaker-related subfamily, beta member 1##NM_015508|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AK291261|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BX537965|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##BC050350|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##CR749647|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##NM_001184717|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase	0.365839	0.0	denovo_WM_7:21:0.341
chr14	67485521	67485678	reg1010592.p2	4.735	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-510374	+	TSC_hg19_v1_chr14_+_66974870 AK315569	-510730	+	TSC_hg19_v1_chr14_+_66974859 AK025169	-510746	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	170544	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	222564	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	340967	-	AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	0.515406	0.0	denovo_WM_7:-48:0.246
chr2	8821035	8821117	reg1008932.p2	4.735	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1763489	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1803213	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1814373	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1127	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	156643	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	322745	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	1.026784	0.0	
chr4	164511210	164511389	reg1004412.p1	4.735	+	TSC_hg19_v1_chr4_+_164415868 BC011842	-95426	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-95457	+	TSC_hg19_v1_chr4_+_164415817 BC017418 AK298235	-95483	+	AB463878 AK000675 AK301408 NM_017923	23416	-	NM_012403	607563	-	AK289711 NM_001166373	793107	-	BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##BC017418|C4orf43|55319|chromosome 4 open reading frame 43##AK298235|C4orf43|55319|chromosome 4 open reading frame 43##AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1	0.0	0.0	
chr5	118611669	118611758	reg1007368.p3	4.735	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-7196	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-7255	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-204548	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	79905	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	80025	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	176483	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.924009	0.0	denovo_WM_7:104:0.486
chr7	108075408	108075568	reg1009539.p2	4.735	+	AJ001057 AB385311 NM_001037132	-194936	-	BC142619 BC140804 BC144591 AF028816 AK300385 NM_007356	-304696	-	AB384752 TSC_hg19_v1_chr7_-_107643594 BC113455 M61916 BX648251 AK303501 AK309921 AK307611 BC044633 BC052598 NM_002291	-431883	-	TSC_hg19_v1_chr7_-_108096830 BC114570 BC115736 AB002341 BX538010 AK299870 BC098401 NM_001193582 NM_001193583 NM_001193584 NM_005010	21441	-	TSC_hg19_v1_chr7_-_108142934 BC005203 AK002115	67484	-	AL834147 TSC_hg19_v1_chr7_-_108166546	91045	-	AJ001057|NRCAM|4897|neuronal cell adhesion molecule##NM_001037132|NRCAM|4897|neuronal cell adhesion molecule##BC142619|LAMB4|22798|laminin, beta 4##BC140804|LAMB4|22798|laminin, beta 4##BC144591|LAMB4|22798|laminin, beta 4##AF028816|LAMB4|22798|laminin, beta 4##AK300385|LAMB4|22798|laminin, beta 4##NM_007356|LAMB4|22798|laminin, beta 4##BC113455|LAMB1|3912|laminin, beta 1##M61916|LAMB1|3912|laminin, beta 1##BX648251|LAMB1|3912|laminin, beta 1##AK303501|LAMB1|3912|laminin, beta 1##AK309921|LAMB1|3912|laminin, beta 1##AK307611|LAMB1|3912|laminin, beta 1##BC044633|LAMB1|3912|laminin, beta 1##BC052598|LAMB1|3912|laminin, beta 1##NM_002291|LAMB1|3912|laminin, beta 1##BC114570|NRCAM|4897|neuronal cell adhesion molecule##BC115736|NRCAM|4897|neuronal cell adhesion molecule##AB002341|NRCAM|4897|neuronal cell adhesion molecule##BX538010|NRCAM|4897|neuronal cell adhesion molecule##AK299870|NRCAM|4897|neuronal cell adhesion molecule##BC098401|NRCAM|4897|neuronal cell adhesion molecule##NM_001193582|NRCAM|4897|neuronal cell adhesion molecule##NM_001193583|NRCAM|4897|neuronal cell adhesion molecule##NM_001193584|NRCAM|4897|neuronal cell adhesion molecule##NM_005010|NRCAM|4897|neuronal cell adhesion molecule##BC005203|PNPLA8|50640|patatin-like phospholipase domain containing 8##AK002115|PNPLA8|50640|patatin-like phospholipase domain containing 8##AL834147|PNPLA8|50640|patatin-like phospholipase domain containing 8	0.766639	0.0	denovo_WM_7:-36:0.719
chr9	127586584	127586734	reg1014362.p1	4.735	+	TSC_hg19_v1_chr9_+_127539438 AK074709 NM_182487 AB119055 AY358185	-47159	+	HQ692858 HQ709185 TSC_hg19_v1_chr9_-_127533591 U80802 AF004291 NM_001489 NM_033334 S83309 BC030600 BC042395 BC042406	-53149	-	AK021895 AB074162 BC030772 TSC_hg19_v1_chr9_+_127420713 AB593023	-165955	+	BC150645 BC171828 BC171830 BC171837 BC127949 TSC_hg19_v1_chr9_+_127615749 NM_001045476	29065	+	TSC_hg19_v1_chr9_-_127624226 BC071915 U12465 BC000348 AK291072 BC010919 D28448 NM_007209	37558	-	TSC_hg19_v1_chr9_+_127624397 AK056174	37735	+	AK074709|OLFML2A|169611|olfactomedin-like 2A##NM_182487|OLFML2A|169611|olfactomedin-like 2A##AB119055|OLFML2A|169611|olfactomedin-like 2A##AY358185|OLFML2A|169611|olfactomedin-like 2A##HQ692858|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##HQ709185|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##U80802|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AF004291|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_001489|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_033334|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##S83309|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC030600|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042395|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042406|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AB593023|MIR181A2HG|100379345|MIR181A2 host gene (non-protein coding)##BC150645|WDR38|401551|WD repeat domain 38##BC171828|WDR38|401551|WD repeat domain 38##BC171830|WDR38|401551|WD repeat domain 38##BC171837|WDR38|401551|WD repeat domain 38##BC127949|WDR38|401551|WD repeat domain 38##NM_001045476|WDR38|401551|WD repeat domain 38##BC071915|RPL35|11224|ribosomal protein L35##U12465|RPL35|11224|ribosomal protein L35##BC000348|RPL35|11224|ribosomal protein L35##AK291072|RPL35|11224|ribosomal protein L35##BC010919|RPL35|11224|ribosomal protein L35##D28448|RPL35|11224|ribosomal protein L35##NM_007209|RPL35|11224|ribosomal protein L35##AK056174|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like	0.0	0.0	
chr1	168689022	168689113	reg1010622.p1	4.734	+	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	-143275	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-175850	-	AJ010277 NM_005149 BC093664 BC093666 EU446671	-438765	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	9362	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	386902	+	TSC_hg19_v1_chr1_-_169337033 AB209049 BC006983 AK290701 AF153191 AK094513 AK301917 NM_013330 NM_197972	648025	-	NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AJ010277|TBX19|9095|T-box 19##NM_005149|TBX19|9095|T-box 19##BC093664|TBX19|9095|T-box 19##BC093666|TBX19|9095|T-box 19##EU446671|TBX19|9095|T-box 19##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AB209049|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##BC006983|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK290701|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AF153191|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK094513|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK301917|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_013330|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_197972|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	0.997541	0.0	denovo_WM_7:-27:0.973
chr15	51178164	51178279	reg1010675.p1	4.734	+	TSC_hg19_v1_chr15_-_51057895 AK075454 AY169314 NM_032802	-120318	-	TSC_hg19_v1_chr15_-_51057864 BC025740 AK315651 AJ345028	-120362	-	TSC_hg19_v1_chr15_-_50978995 AY032950 NM_017672	-199224	-	TSC_hg19_v1_chr15_-_51200797 AK091906	22540	-	TSC_hg19_v1_chr15_+_51200903 AK297290 NM_001252127 NM_007347 BC126308 BC130466 BC144025 BC144030 AF155156 AB030653 HQ258532 CR749604	22706	+	BC127701 BC127702 TSC_hg19_v1_chr15_-_51386865 AK123281	208629	-	AK075454|SPPL2A|84888|signal peptide peptidase-like 2A##AY169314|SPPL2A|84888|signal peptide peptidase-like 2A##NM_032802|SPPL2A|84888|signal peptide peptidase-like 2A##BC025740|SPPL2A|84888|signal peptide peptidase-like 2A##AK315651|SPPL2A|84888|signal peptide peptidase-like 2A##AJ345028|SPPL2A|84888|signal peptide peptidase-like 2A##AY032950|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##NM_017672|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK297290|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_001252127|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_007347|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC126308|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC130466|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144025|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144030|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AF155156|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AB030653|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##HQ258532|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##CR749604|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC127701|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##BC127702|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##AK123281|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3	0.0	0.0	
chr21	38929737	38929917	reg1005780.p2	4.734	+	NM_130438 NM_001396 U52373 D85759 U58496	-137207	+	D86550 NM_130436	-138621	+	AF108830 NM_101395 AB015283 AB015284	-189957	+	D87327 NM_002240 TSC_hg19_v1_chr21_-_39288761	358884	-	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	563574	-	BC013327 NM_002243	698836	+	NM_130438|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_001396|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U52373|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D85759|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U58496|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D86550|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_130436|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AF108830|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_101395|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015283|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015284|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D87327|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_002240|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	0.0	0.0	
chr9	109626916	109627047	reg1010815.p2	4.734	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	-1617	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-1170063	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-1170128	+	TSC_hg19_v1_chr9_+_109686439 CR749850	59488	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	418551	+	TSC_hg19_v1_chr9_+_110045559 AK125226 AK223479	418576	+	BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK125226|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK223479|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.794637	0.0	denovo_WM_7:-5:0.782
chrX	7809314	7809431	reg1009974.p1	4.734	+	NM_000351 M16505 J04964 AK314034	-671871	+	M86934 AK300740 BC012494 TSC_hg19_v1_chrX_-_7066203 AK307088 AK223405 AK300985 AK313155 NM_001135565 NM_001178135 NM_001178136 NM_012080	-743180	-	TSC_hg19_v1_chrX_+_7065865 AM072428 DQ851172 FM209047	-743421	+	AF167081 NM_013452	930	+	AK289888 U03886 NM_004650 BC020746	86078	-	AK304586 TSC_hg19_v1_chrX_-_7895766 NM_001142389 NM_001172672	86399	-	NM_000351|STS|412|steroid sulfatase (microsomal), isozyme S##M16505|STS|412|steroid sulfatase (microsomal), isozyme S##J04964|STS|412|steroid sulfatase (microsomal), isozyme S##AK314034|STS|412|steroid sulfatase (microsomal), isozyme S##M86934|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300740|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##BC012494|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK307088|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK223405|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300985|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK313155|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001135565|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178135|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178136|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_012080|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AM072428|STS|412|steroid sulfatase (microsomal), isozyme S##FM209047|STS|412|steroid sulfatase (microsomal), isozyme S##AF167081|VCX|26609|variable charge, X-linked##NM_013452|VCX|26609|variable charge, X-linked##AK289888|PNPLA4|8228|patatin-like phospholipase domain containing 4##U03886|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_004650|PNPLA4|8228|patatin-like phospholipase domain containing 4##BC020746|PNPLA4|8228|patatin-like phospholipase domain containing 4##AK304586|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001142389|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001172672|PNPLA4|8228|patatin-like phospholipase domain containing 4	0.965058	0.266747	denovo_WM_7:-19:0.799	CTCF.p2:-34:0.267
chr13	41557141	41557251	reg1007424.p2	4.733	+	AK304289 BC010575 BC030507 NM_001145353	-808	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	-1000	-	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	-61331	-	TSC_hg19_v1_chr13_-_41593453 M82882	36247	-	TSC_hg19_v1_chr13_-_41593499 NM_172373	36303	-	BX640798 TSC_hg19_v1_chr13_-_41635093	77889	-	AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##M82882|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_172373|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BX640798|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.0	0.0	
chr15	73530531	73530677	reg1008777.p2	4.733	+	NM_001172623 NM_001172624 NM_002499 U61262 U72391 BC117161 BC143270 BC143271 BC143279 AB528479	-185684	+	TSC_hg19_v1_chr15_-_73076118 AK055526 NM_031284	-454481	-	BC044589 TSC_hg19_v1_chr15_-_73076072	-454533	-	TSC_hg19_v1_chr15_-_73661207 AJ132429 DQ854814	130603	-	AJ238850 NM_005477	131000	-	NM_001042367 AK131030 BC055412	204905	+	NM_001172623|NEO1|4756|neogenin 1##NM_001172624|NEO1|4756|neogenin 1##NM_002499|NEO1|4756|neogenin 1##U61262|NEO1|4756|neogenin 1##U72391|NEO1|4756|neogenin 1##BC117161|NEO1|4756|neogenin 1##BC143270|NEO1|4756|neogenin 1##BC143271|NEO1|4756|neogenin 1##BC143279|NEO1|4756|neogenin 1##AK055526|ADPGK|83440|ADP-dependent glucokinase##NM_031284|ADPGK|83440|ADP-dependent glucokinase##BC044589|ADPGK|83440|ADP-dependent glucokinase##AJ132429|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##DQ854814|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##AJ238850|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##NM_005477|HCN4|10021|hyperpolarization activated cyclic nucleotide-gated potassium channel 4##NM_001042367|C15orf60|283677|chromosome 15 open reading frame 60##AK131030|C15orf60|283677|chromosome 15 open reading frame 60##BC055412|C15orf60|283677|chromosome 15 open reading frame 60	2.440923	0.0	denovo_WM_7:-13:0.455	denovo_WM_7:15:0.765	denovo_WM_7:30:0.775
chr2	54824878	54825058	reg1013175.p2	4.733	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-39403	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-140601	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	-141356	+	NM_001039753	127180	+	TSC_hg19_v1_chr2_-_55199899 BC131571	374940	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	412404	-	AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4	0.999316	0.0	
chr4	38784586	38784732	reg1012763.p2	4.733	+	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	-60	-	AF289565 TSC_hg19_v1_chr4_-_38666549	-118170	-	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	-118833	+	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	21760	-	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	73769	-	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	84732	+	AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10##AF289565|FLJ13197|79667|uncharacterized FLJ13197##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6##NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1	0.0	0.0	
chr5	143199771	143199935	reg1008426.p1	4.733	+	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	-8095	+	NM_001018074 NM_001018075 NM_001018077	-384777	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-415687	-	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	350282	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	350323	-	BC014253 BX647859 CR749463 TSC_hg19_v1_chr5_-_143550217 NM_001024947 NM_030799	350393	-	AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5##BC014253|YIPF5|81555|Yip1 domain family, member 5##BX647859|YIPF5|81555|Yip1 domain family, member 5##CR749463|YIPF5|81555|Yip1 domain family, member 5##NM_001024947|YIPF5|81555|Yip1 domain family, member 5##NM_030799|YIPF5|81555|Yip1 domain family, member 5	1.980088	0.0	denovo_WM_7:38:0.445	denovo_WM_7:39:0.298	denovo_WM_7:54:0.318	denovo_WM_7:55:0.464
chr6	155492371	155492551	reg1009240.p1	4.733	+	NM_012454	-81039	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-437636	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-437907	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	45667	+	BC020838 NM_001001346	92685	+	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	143124	-	NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial	0.0	0.0	
chr10	112583078	112583223	reg1008505.p1	4.732	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-179021	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-239035	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-255658	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	48462	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	48564	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	95546	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	1.94284	0.0	denovo_WM_7:41:0.351	denovo_WM_7:42:0.408	denovo_WM_7:43:0.205	denovo_WM_7:57:0.322	denovo_WM_7:58:0.527
chr12	113808815	113808973	reg1011902.p2	4.732	+	TSC_hg19_v1_chr12_+_113796394 BC030618	-12508	+	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	-12523	+	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	-35969	-	J05037 TSC_hg19_v1_chr12_-_113841693 AK292760 BC020750 NM_006843	32780	-	TSC_hg19_v1_chr12_+_113860217 BC009849 NM_138432 BC091479 AF134473	51303	+	AF291181 NM_022363	100982	-	BC030618|PLBD2|196463|phospholipase B domain containing 2##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2##NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##J05037|SDS|10993|serine dehydratase##AK292760|SDS|10993|serine dehydratase##BC020750|SDS|10993|serine dehydratase##NM_006843|SDS|10993|serine dehydratase##BC009849|SDSL|113675|serine dehydratase-like##NM_138432|SDSL|113675|serine dehydratase-like##BC091479|SDSL|113675|serine dehydratase-like##AF134473|SDSL|113675|serine dehydratase-like##AF291181|LHX5|64211|LIM homeobox 5##NM_022363|LHX5|64211|LIM homeobox 5	0.049361	0.0	
chr6	135545310	135545428	reg1012540.p1	4.732	+	TSC_hg19_v1_chr6_+_135517056 X17469	-28280	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	-28463	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-42783	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	273456	-	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	273516	-	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	273595	+	X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271	0.110656	0.0	
chr7	125875659	125875781	reg1004600.p2	4.732	+	NM_001042594 NM_015450	-1305684	-	BC130600 BC130604 NM_001024603	-1444918	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1469924	-	NM_000845	1007848	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	1016645	-	TSC_hg19_v1_chr7_-_126893165 AK290197	1017432	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.983614	0.0	
chrY	1311780	1311887	reg1012697.p1	4.732	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-30249	-	NM_000451 NM_006883 U89331	-776755	+	AK293506 NM_013239	-1014144	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	25881	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	39750	+	BC035407 NM_002183	93675	+	AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)	0.995151	0.0	denovo_WM_7:-22:0.971
chr11	96197186	96197283	reg1008218.p1	4.731	+	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	-74060	+	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	-74192	-	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	-120831	-	TSC_hg19_v1_chr11_+_98891687 AK308788 NM_001243270 NM_001243271 NM_014361 BC039255 BC144186	2694515	+	AB013802 AB013803 NM_175566	3229639	+	TSC_hg19_v1_chr11_+_100557961 NM_152432	4360894	+	AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AK308788|CNTN5|53942|contactin 5##NM_001243270|CNTN5|53942|contactin 5##NM_001243271|CNTN5|53942|contactin 5##NM_014361|CNTN5|53942|contactin 5##BC039255|CNTN5|53942|contactin 5##BC144186|CNTN5|53942|contactin 5##AB013802|CNTN5|53942|contactin 5##AB013803|CNTN5|53942|contactin 5##NM_175566|CNTN5|53942|contactin 5##NM_152432|ARHGAP42|143872|Rho GTPase activating protein 42	0.988997	0.941744	denovo_WM_7:49:0.820	CTCF.p2:-55:0.942
chr12	77157667	77157805	reg1004213.p2	4.731	+	TSC_hg19_v1_chr12_-_76953586 AF323730 AF392452 NM_001003712 NM_020841	-204128	-	TSC_hg19_v1_chr12_-_76953526 BC082235	-204205	-	BC111728 TSC_hg19_v1_chr12_-_76953484	-204253	-	TSC_hg19_v1_chr12_+_77157882 NM_015336 BC030990	126	+	TSC_hg19_v1_chr12_+_77157894 BC050324 AB023163	168	+	AB385406 CU690640 AF049612 AF161412 TSC_hg19_v1_chr12_+_77158026 AB097013 AB097035 AK292866 AK299089	290	+	AF323730|OSBPL8|114882|oxysterol binding protein-like 8##AF392452|OSBPL8|114882|oxysterol binding protein-like 8##NM_001003712|OSBPL8|114882|oxysterol binding protein-like 8##NM_020841|OSBPL8|114882|oxysterol binding protein-like 8##BC082235|OSBPL8|114882|oxysterol binding protein-like 8##BC111728|OSBPL8|114882|oxysterol binding protein-like 8##NM_015336|ZDHHC17|23390|zinc finger, DHHC-type containing 17##BC030990|ZDHHC17|23390|zinc finger, DHHC-type containing 17##BC050324|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB023163|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AF049612|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AF161412|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097013|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AB097035|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK292866|ZDHHC17|23390|zinc finger, DHHC-type containing 17##AK299089|ZDHHC17|23390|zinc finger, DHHC-type containing 17	0.0	0.0	
chr16	31889018	31889152	reg1008116.p1	4.731	+	TSC_hg19_v1_chr16_+_31885159 BC036367 BC127088 BC127089 AK292573	-3881	+	AF220492 TSC_hg19_v1_chr16_+_31885131	-3953	+	TSC_hg19_v1_chr16_+_31885114 AK096390	-3969	+	TSC_hg19_v1_chr16_-_32199418 AK300387	310334	-	AB023508 AB023509 BC096700 BC099842 NM_001243722 AK312220 CR541650	375573	+	CR541650 AK312220 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AB023508	798348	-	BC036367|ZNF267|10308|zinc finger protein 267##BC127088|ZNF267|10308|zinc finger protein 267##BC127089|ZNF267|10308|zinc finger protein 267##AK292573|ZNF267|10308|zinc finger protein 267##AF220492|ZNF267|10308|zinc finger protein 267##AK096390|ZNF267|10308|zinc finger protein 267##AK300387|LOC100289574|100289574|hect domain and RLD 2 pseudogene##AB023508|TP53TG3|24150|TP53 target 3##AB023509|TP53TG3|24150|TP53 target 3##BC096700|TP53TG3|24150|TP53 target 3##BC099842|TP53TG3|24150|TP53 target 3##NM_001243722|LOC729264|729264|TP53-target gene 3 protein-like##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AK312220|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AB023508|TP53TG3|24150|TP53 target 3	0.028803	0.0	
chr16	89307470	89307650	reg1011692.p1	4.731	+	TSC_hg19_v1_chr16_+_89284112 NM_001201407 NM_182531 AK056437 AK295122	-23433	+	NM_001242757	-41032	-	TSC_hg19_v1_chr16_+_89238171 D83542 NM_004933 AK308596 AK308631 BC008951 DQ893277 DQ896608	-69361	+	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	42514	-	BC041585 TSC_hg19_v1_chr16_-_89351073	43396	-	AK293862 NM_001242885	79980	+	NM_001201407|ZNF778|197320|zinc finger protein 778##NM_182531|ZNF778|197320|zinc finger protein 778##AK056437|ZNF778|197320|zinc finger protein 778##NM_001242757|SLC22A31|146429|solute carrier family 22, member 31##D83542|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##NM_004933|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##AK308631|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##BC008951|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##DQ893277|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##DQ896608|CDH15|1013|cadherin 15, type 1, M-cadherin (myotubule)##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036	0.0	0.0	
chr13	80913435	80913553	reg1010170.p1	4.730	+	BC004205 TSC_hg19_v1_chr13_-_80913114	-452	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-857939	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	-858072	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	1570	-	TSC_hg19_v1_chr13_-_84456424 BC051738	3542931	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3543006	-	BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1	0.944008	0.0	denovo_WM_7:22:0.359	denovo_WM_7:24:0.563
chr14	103279823	103279911	reg1000883.p2	4.730	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-35967	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-36048	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-220706	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	109131	+	TSC_hg19_v1_chr14_-_103430941 BX248752	151091	-	AB384568 TSC_hg19_v1_chr14_-_103523568	243674	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	1.896161	0.0	denovo_WM_7:-68:0.992
chr15	52399541	52399698	reg1009743.p1	4.730	+	TSC_hg19_v1_chr15_+_52311442 BC035492	-88158	+	TSC_hg19_v1_chr15_+_52311432 CR749401	-88185	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	-88200	+	AF285092 AB587584 TSC_hg19_v1_chr15_-_52404936 BC093826 BC093828 BC143227 BC104442 BC104443 AF326964 NM_020396	5327	-	AB528747 AF501885 AM393025 TSC_hg19_v1_chr15_-_52472123 AL117471 BC011671 AK314775 BC013997 AF017656 NM_006578 AK290330	72522	-	TSC_hg19_v1_chr15_+_52472257 AF007131	72716	+	BC035492|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##AF285092|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093826|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093828|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104442|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104443|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF326964|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##NM_020396|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF501885|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AM393025|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AL117471|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC011671|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK314775|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC013997|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF017656|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##NM_006578|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK290330|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973	0.04031	0.0	
chr17	5372391	5372502	reg1012339.p2	4.730	+	BC050409 TSC_hg19_v1_chr17_-_5372303 AK314580 AK295760 NM_001199699 NM_020162	-139	-	BC141954 AK025625 BC141953 TSC_hg19_v1_chr17_-_5372206	-254	-	BC030017 TSC_hg19_v1_chr17_-_5372147 AK295074	-342	-	AB385189 CR457202 CU679843 TSC_hg19_v1_chr17_-_5389504 AF151859 AF208065 AF242523 AF132289 BC010890 NM_016041	17061	-	AK056072 TSC_hg19_v1_chr17_+_5389846	17334	+	TSC_hg19_v1_chr17_+_5389888 BC000229	17470	+	BC050409|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK314580|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK295760|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##NM_001199699|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##NM_020162|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK025625|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##BC030017|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK295074|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##CR457202|DERL2|51009|Der1-like domain family, member 2##AF151859|DERL2|51009|Der1-like domain family, member 2##AF208065|DERL2|51009|Der1-like domain family, member 2##AF242523|DERL2|51009|Der1-like domain family, member 2##AF132289|DERL2|51009|Der1-like domain family, member 2##BC010890|DERL2|51009|Der1-like domain family, member 2##NM_016041|DERL2|51009|Der1-like domain family, member 2##AK056072|MIS12|79003|MIS12, MIND kinetochore complex component, homolog (S. pombe)##BC000229|MIS12|79003|MIS12, MIND kinetochore complex component, homolog (S. pombe)	0.993334	0.0	denovo_WM_7:71:0.689
chr19	18400323	18400455	reg1009910.p2	4.730	+	TSC_hg19_v1_chr19_-_18392451 X56681	-7921	-	TSC_hg19_v1_chr19_-_18392431 BC052571 AK223630 NM_005354	-7965	-	BC169273 TSC_hg19_v1_chr19_-_18392160 X51346	-8284	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	33498	-	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	33577	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	51018	+	X56681|JUND|3727|jun D proto-oncogene##AK223630|JUND|3727|jun D proto-oncogene##NM_005354|JUND|3727|jun D proto-oncogene##BC169273|JUND|3727|jun D proto-oncogene##X51346|JUND|3727|jun D proto-oncogene##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I	1.987324	0.0	denovo_WM_7:-64:0.348	denovo_WM_7:-65:0.366	denovo_WM_7:-66:0.274
chr22	25464314	25464394	reg1006901.p1	4.730	+	BC171801 NM_001145206	-40414	+	BC130647 BC130649 CR456388 NM_001001663	-129042	-	NM_001039948 NM_001098497 NM_001098498 NM_133454 AB275761 AK091494 BC036915	-262144	+	TSC_hg19_v1_chr22_+_25591072 AK025418	126775	+	NM_004076 U71216 BC069479 BC102021 BC102022 BC107482 CR456427	131490	+	NM_000496	151257	+	BC171801|KIAA1671|85379|KIAA1671##NM_001145206|KIAA1671|85379|KIAA1671##BC130647|TMEM211|255349|transmembrane protein 211##BC130649|TMEM211|255349|transmembrane protein 211##CR456388|TMEM211|255349|transmembrane protein 211##NM_001001663|TMEM211|255349|transmembrane protein 211##NM_001039948|SGSM1|129049|small G protein signaling modulator 1##NM_001098497|SGSM1|129049|small G protein signaling modulator 1##NM_001098498|SGSM1|129049|small G protein signaling modulator 1##NM_133454|SGSM1|129049|small G protein signaling modulator 1##AB275761|SGSM1|129049|small G protein signaling modulator 1##BC036915|SGSM1|129049|small G protein signaling modulator 1##AK025418|KIAA1671|85379|KIAA1671##NM_004076|CRYBB3|1417|crystallin, beta B3##U71216|CRYBB3|1417|crystallin, beta B3##BC069479|CRYBB3|1417|crystallin, beta B3##BC102021|CRYBB3|1417|crystallin, beta B3##BC102022|CRYBB3|1417|crystallin, beta B3##BC107482|CRYBB3|1417|crystallin, beta B3##CR456427|CRYBB3|1417|crystallin, beta B3##NM_000496|CRYBB2|1415|crystallin, beta B2	1.725924	0.0	denovo_WM_7:43:0.583	denovo_WM_7:58:0.554
chr6	27111520	27111624	reg1001050.p4	4.730	+	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	-4499	+	TSC_hg19_v1_chr6_+_27100821 AK312124 NM_021064 L19778 BC067782 BC016677 AB590259 DQ891024 DQ894204 DQ894286	-10755	+	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	-11007	-	AB590085 EU446970 TSC_hg19_v1_chr6_-_27114635 AJ223352 BC051872 BC064959 BC108737 BC000893 AK292062 NM_080593	3035	-	BC093849 BC093851 TSC_hg19_v1_chr6_+_27114884 AK312232 AB528147 BC134366 BC148293 NM_080596	3311	+	AK097918 AK314037 NM_005865 AF052514 AK303106 AB590521	103924	+	BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i##AK312124|HIST1H2AG|8969|histone cluster 1, H2ag##NM_021064|HIST1H2AG|8969|histone cluster 1, H2ag##L19778|HIST1H2AG|8969|histone cluster 1, H2ag##BC067782|HIST1H2AG|8969|histone cluster 1, H2ag##BC016677|HIST1H2AG|8969|histone cluster 1, H2ag##DQ891024|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894204|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894286|HIST1H2AG|8969|histone cluster 1, H2ag##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj##EU446970|HIST1H2BK|85236|histone cluster 1, H2bk##AJ223352|HIST1H2BK|85236|histone cluster 1, H2bk##BC051872|HIST1H2BK|85236|histone cluster 1, H2bk##BC064959|HIST1H2BK|85236|histone cluster 1, H2bk##BC108737|HIST1H2BK|85236|histone cluster 1, H2bk##BC000893|HIST1H2BK|85236|histone cluster 1, H2bk##AK292062|HIST1H2BK|85236|histone cluster 1, H2bk##NM_080593|HIST1H2BK|85236|histone cluster 1, H2bk##BC093849|HIST1H2AH|85235|histone cluster 1, H2ah##BC093851|HIST1H2AH|85235|histone cluster 1, H2ah##AK312232|HIST1H2AH|85235|histone cluster 1, H2ah##BC134366|HIST1H2AH|85235|histone cluster 1, H2ah##BC148293|HIST1H2AH|85235|histone cluster 1, H2ah##NM_080596|HIST1H2AH|85235|histone cluster 1, H2ah##AK097918|PRSS16|10279|protease, serine, 16 (thymus)##AK314037|PRSS16|10279|protease, serine, 16 (thymus)##NM_005865|PRSS16|10279|protease, serine, 16 (thymus)##AF052514|PRSS16|10279|protease, serine, 16 (thymus)##AK303106|PRSS16|10279|protease, serine, 16 (thymus)	0.997548	0.0	
chr9	128408898	128409048	reg1012912.p2	4.730	+	TSC_hg19_v1_chr9_+_128024122 AK056493 NM_015635 AB040954 BC114937 BC114962	-384824	+	TSC_hg19_v1_chr9_+_128024104 BC110990	-384869	+	TSC_hg19_v1_chr9_+_128024097 AK296381	-384875	+	TSC_hg19_v1_chr9_-_128469297 M37191	60337	-	TSC_hg19_v1_chr9_-_128469466 AK290060	60494	-	AL833042 TSC_hg19_v1_chr9_-_128469485 AY633624 AY633625 AY633626 BC002326 BC003044	60506	-	AK056493|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##NM_015635|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AB040954|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114937|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC114962|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##M37191|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AK290060|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AL833042|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633624|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633625|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY633626|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC002326|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##BC003044|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1	0.0	0.0	
chrX	45622074	45622230	reg1010230.p1	4.730	+	BC035375 AY358764 TSC_hg19_v1_chrX_-_45060106 BC137528 BC137529 AK024165 NM_024689 NM_176819	-562039	-	TSC_hg19_v1_chrX_+_44732433 NM_021140 AB208795	-889716	+	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	-918839	+	NM_001129898 NM_001129899 NM_001129900 NM_017776 TSC_hg19_v1_chrX_+_46306706 AK289703 AK096413 AK000351	684559	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	782704	-	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	782792	+	BC035375|CXorf36|79742|chromosome X open reading frame 36##AY358764|CXorf36|79742|chromosome X open reading frame 36##BC137528|CXorf36|79742|chromosome X open reading frame 36##BC137529|CXorf36|79742|chromosome X open reading frame 36##AK024165|CXorf36|79742|chromosome X open reading frame 36##NM_024689|CXorf36|79742|chromosome X open reading frame 36##NM_176819|CXorf36|79742|chromosome X open reading frame 36##NM_021140|KDM6A|7403|lysine (K)-specific demethylase 6A##AB208795|KDM6A|7403|lysine (K)-specific demethylase 6A##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21##NM_001129898|ZNF673|55634|zinc finger family member 673##NM_001129899|ZNF673|55634|zinc finger family member 673##NM_001129900|ZNF673|55634|zinc finger family member 673##NM_017776|ZNF673|55634|zinc finger family member 673##AK289703|ZNF673|55634|zinc finger family member 673##AK096413|ZNF673|55634|zinc finger family member 673##AK000351|ZNF673|55634|zinc finger family member 673##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588	0.0	0.0	
chr16	57338104	57338263	reg1011730.p1	4.729	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-19604	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-19672	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-59050	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	54527	+	AK222692 TSC_hg19_v1_chr16_+_57406382	68202	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	68256	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	0.0	0.0	
chr20	20426647	20426799	reg1011407.p2	4.729	+	TSC_hg19_v1_chr20_+_20348747 M93119 NM_002196	-77969	+	NM_001167816 AL117439	-389403	+	BC144222 AF255443 AF318303 AF318304 AF318305 NM_016652	-390036	-	DQ310704 BC171842 TSC_hg19_v1_chr20_-_20693287 NM_020343	266505	-	NM_001163022 NM_001163023 NM_018474 TSC_hg19_v1_chr20_+_21106657 AF451990 BC039296 AK293567 AK293166 AK025476	679941	+	TSC_hg19_v1_chr20_+_21106722 BC105093 BC113370 AK295355 BC045826	680004	+	M93119|INSM1|3642|insulinoma-associated 1##NM_002196|INSM1|3642|insulinoma-associated 1##NM_001167816|C20orf26|26074|chromosome 20 open reading frame 26##AL117439|C20orf26|26074|chromosome 20 open reading frame 26##BC144222|CRNKL1|51340|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)##AF255443|CRNKL1|51340|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)##AF318303|CRNKL1|51340|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)##AF318304|CRNKL1|51340|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)##AF318305|CRNKL1|51340|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)##NM_016652|CRNKL1|51340|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)##DQ310704|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##BC171842|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##NM_020343|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##NM_001163022|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163023|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_018474|PLK1S1|55857|polo-like kinase 1 substrate 1##AF451990|PLK1S1|55857|polo-like kinase 1 substrate 1##BC039296|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293567|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293166|PLK1S1|55857|polo-like kinase 1 substrate 1##AK025476|PLK1S1|55857|polo-like kinase 1 substrate 1##BC105093|PLK1S1|55857|polo-like kinase 1 substrate 1##BC113370|PLK1S1|55857|polo-like kinase 1 substrate 1##AK295355|PLK1S1|55857|polo-like kinase 1 substrate 1##BC045826|PLK1S1|55857|polo-like kinase 1 substrate 1	0.986906	0.0	denovo_WM_7:-33:0.560	denovo_WM_7:-35:0.326
chr20	5585737	5585917	reg1000777.p2	4.729	+	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-290791	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-478132	+	TSC_hg19_v1_chr20_+_5107615 NM_003818 AK315489 Y16521 AK304763	-478305	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	5760	-	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	145239	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	306299	+	AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##NM_003818|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK315489|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##Y16521|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK304763|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)	0.442632	0.0	
chr4	87791764	87791906	reg1009805.p2	4.729	+	AJ583502 BC107051 BC107052 EF437223 NM_197965	-21494	-	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-276362	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-417512	-	BC016746 BC063410 NM_144645	21725	-	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	64380	+	TSC_hg19_v1_chr4_+_87857481 L13743	65648	+	AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1	0.0	0.0	
chr12	133404363	133404498	reg1009295.p1	4.728	+	BC048203 TSC_hg19_v1_chr12_-_133372555	-31873	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-66010	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-97872	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	549	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	868	-	TSC_hg19_v1_chr12_-_133405429 BC142658 BC146675 NM_001172557 BC060826	1032	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3##BC142658|GOLGA3|2802|golgin A3##BC146675|GOLGA3|2802|golgin A3##NM_001172557|GOLGA3|2802|golgin A3##BC060826|GOLGA3|2802|golgin A3	0.999822	0.0	denovo_WM_7:69:0.457	denovo_WM_7:70:0.457
chr20	37501978	37502158	reg1009434.p1	4.728	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-67714	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-124956	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-148909	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	52921	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	53000	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	88921	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.0	0.0	
chr4	124364919	124365099	reg1004249.p2	4.728	+	AK026960 BC063856 NM_005841	-44336	+	TSC_hg19_v1_chr4_+_124317949 AY192146 NM_199327	-47053	+	TSC_hg19_v1_chr4_+_123844255 NM_145207 AF361489 AL832175 AF479656 AK091384 AX746949 BC048217 AM392939 AM393832	-520757	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	1268805	-	NM_024582	1872557	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	4189130	+	AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##AY192146|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_199327|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_145207|SPATA5|166378|spermatogenesis associated 5##AF361489|SPATA5|166378|spermatogenesis associated 5##AL832175|SPATA5|166378|spermatogenesis associated 5##AF479656|SPATA5|166378|spermatogenesis associated 5##AK091384|SPATA5|166378|spermatogenesis associated 5##BC048217|SPATA5|166378|spermatogenesis associated 5##AM392939|SPATA5|166378|spermatogenesis associated 5##AM393832|SPATA5|166378|spermatogenesis associated 5##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)	0.0	0.0	
chr6	16951143	16951289	reg1013254.p2	4.728	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	-189519	-	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-712365	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-807906	+	NM_001190766	151272	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	330638	+	NM_001143941	331078	+	BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24	0.985835	0.0	denovo_WM_7:-1:0.708
chrX	131615011	131615178	reg1009167.p2	4.728	+	AF491305 EU446986 BC074775 BC074776 AB077698 AB077699 AF467070 AJ427918 AJ427919 AY072692 NM_018388 NM_133486	-41417	-	AY372211 AK002178 NM_001170701 NM_001170702 AK300248 NM_001170703	-67509	-	BC035382 TSC_hg19_v1_chrX_-_131353476 AK310997	-261593	-	BC042090 NM_001170704 TSC_hg19_v1_chrX_-_131624064	8939	-	TSC_hg19_v1_chrX_-_132091486 BC037325 AK295118 AL049679 AB067777 AB067776 AK295041	476307	-	AK075402 TSC_hg19_v1_chrX_-_132092281 BC094718	477162	-	AF491305|MBNL3|55796|muscleblind-like 3 (Drosophila)##EU446986|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC074775|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC074776|MBNL3|55796|muscleblind-like 3 (Drosophila)##AB077698|MBNL3|55796|muscleblind-like 3 (Drosophila)##AB077699|MBNL3|55796|muscleblind-like 3 (Drosophila)##AF467070|MBNL3|55796|muscleblind-like 3 (Drosophila)##AJ427918|MBNL3|55796|muscleblind-like 3 (Drosophila)##AJ427919|MBNL3|55796|muscleblind-like 3 (Drosophila)##AY072692|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_018388|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_133486|MBNL3|55796|muscleblind-like 3 (Drosophila)##AY372211|MBNL3|55796|muscleblind-like 3 (Drosophila)##AK002178|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170701|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170702|MBNL3|55796|muscleblind-like 3 (Drosophila)##AK300248|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170703|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC035382|RAP2C|57826|RAP2C, member of RAS oncogene family##AK310997|RAP2C|57826|RAP2C, member of RAS oncogene family##BC042090|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170704|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC037325|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK295118|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AL049679|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AB067777|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AB067776|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK295041|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##AK075402|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##BC094718|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2	0.981082	0.0	denovo_WM_7:-44:0.981
chr19	40410528	40410632	reg1005469.p2	4.727	+	AK296950 TSC_hg19_v1_chr19_-_40337020 NM_001436	-73545	-	TSC_hg19_v1_chr19_-_40337007 BC019260 AK308649	-73574	-	AB463635 M59849 TSC_hg19_v1_chr19_-_40336992	-73612	-	D84239 NM_003890	29952	-	TSC_hg19_v1_chr19_+_40477090 AF020736 AK313183 NM_006503 NM_153001 BC010396 AK310135 AF038965 BC000343 BC014488 BC018811 U27515 AK290285 DQ891875 DQ894876 BT007232 CU679695	66490	+	NM_178544 AK122968 AK292528 BC045649	92405	+	AK296950|FBL|2091|fibrillarin##NM_001436|FBL|2091|fibrillarin##BC019260|FBL|2091|fibrillarin##AK308649|FBL|2091|fibrillarin##M59849|FBL|2091|fibrillarin##D84239|FCGBP|8857|Fc fragment of IgG binding protein##NM_003890|FCGBP|8857|Fc fragment of IgG binding protein##AF020736|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK313183|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_006503|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_153001|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC010396|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK310135|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AF038965|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC000343|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC014488|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC018811|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##U27515|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK290285|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ891875|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ894876|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BT007232|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546	0.999607	0.0	
chr22	45831661	45831796	reg1013160.p2	4.727	+	TSC_hg19_v1_chr22_+_45809599 BC003024 BC009904 AL442116	-22100	+	TSC_hg19_v1_chr22_+_45809579 AK098586 NM_015653 AK225722	-22159	+	TSC_hg19_v1_chr22_-_45809502 BC126208 AJ504806 NM_148674	-22244	-	TSC_hg19_v1_chr22_+_45898762 NM_001996 NM_006485 NM_006486 NM_006487 AK075566 AK075460 AK300806 AK316291 BC022497 AF217999 AF126110 U01244 X53741 X53742 X53743 AB528743 DQ894047	67048	+	NM_001167621 NM_013236 AK294348 TSC_hg19_v1_chr22_+_46067713	235967	+	TSC_hg19_v1_chr22_+_46067733 AF086923 AL050282	236001	+	BC003024|RIBC2|26150|RIB43A domain with coiled-coils 2##BC009904|RIBC2|26150|RIB43A domain with coiled-coils 2##AL442116|RIBC2|26150|RIB43A domain with coiled-coils 2##AK098586|RIBC2|26150|RIB43A domain with coiled-coils 2##NM_015653|RIBC2|26150|RIB43A domain with coiled-coils 2##AK225722|RIBC2|26150|RIB43A domain with coiled-coils 2##BC126208|SMC1B|27127|structural maintenance of chromosomes 1B##AJ504806|SMC1B|27127|structural maintenance of chromosomes 1B##NM_148674|SMC1B|27127|structural maintenance of chromosomes 1B##NM_001996|FBLN1|2192|fibulin 1##NM_006485|FBLN1|2192|fibulin 1##NM_006486|FBLN1|2192|fibulin 1##NM_006487|FBLN1|2192|fibulin 1##AK075566|FBLN1|2192|fibulin 1##AK075460|FBLN1|2192|fibulin 1##AK300806|FBLN1|2192|fibulin 1##AK316291|FBLN1|2192|fibulin 1##BC022497|FBLN1|2192|fibulin 1##AF217999|FBLN1|2192|fibulin 1##AF126110|FBLN1|2192|fibulin 1##U01244|FBLN1|2192|fibulin 1##X53741|FBLN1|2192|fibulin 1##X53742|FBLN1|2192|fibulin 1##X53743|FBLN1|2192|fibulin 1##DQ894047|FBLN1|2192|fibulin 1##NM_001167621|ATXN10|25814|ataxin 10##NM_013236|ATXN10|25814|ataxin 10##AK294348|ATXN10|25814|ataxin 10##AF086923|ATXN10|25814|ataxin 10##AL050282|ATXN10|25814|ataxin 10	0.0	0.988125	CTCF.p2:12:0.988
chrX	20393421	20393568	reg1012839.p1	4.727	+	TSC_hg19_v1_chrX_-_20285141 AK294373	-108330	-	TSC_hg19_v1_chrX_-_20285001 AB208933	-108537	-	AB102662 L07599 AB384785 BC096301 BC096302 BC096303 NM_004586 U08316 AK313932	-108764	-	TSC_hg19_v1_chrX_+_21392535 NM_001168647 NM_001168648 NM_001168649 NM_014927 AB020709 AK294728	999014	+	BC109031 AK092279 AX747450 NM_153270	1282937	-	BC005948 AF129505 AJ250584 NM_014332 AK312134	1382723	-	AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB102662|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##L07599|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096301|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096302|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096303|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_004586|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##U08316|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK313932|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_001168647|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168648|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168649|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_014927|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AB020709|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AK294728|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##BC109031|KLHL34|257240|kelch-like 34 (Drosophila)##AK092279|KLHL34|257240|kelch-like 34 (Drosophila)##NM_153270|KLHL34|257240|kelch-like 34 (Drosophila)##BC005948|SMPX|23676|small muscle protein, X-linked##AF129505|SMPX|23676|small muscle protein, X-linked##AJ250584|SMPX|23676|small muscle protein, X-linked##NM_014332|SMPX|23676|small muscle protein, X-linked##AK312134|SMPX|23676|small muscle protein, X-linked	0.0	0.0	
chr1	210534305	210534457	reg1010538.p1	4.726	+	NM_001170580 BC051191	-31740	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-32116	+	NM_001122834 NM_001170564 AK297193	-32785	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	773004	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	898327	+	TSC_hg19_v1_chr1_+_211432726 AK131312	898346	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.0	0.545037	CTCF.p2:-46:0.545
chr19	6616010	6616190	reg1013662.p1	4.726	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-24942	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-24994	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-25068	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	54024	-	AF064090 NM_003807 NM_172014	54498	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	104556	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.0	0.0	
chr3	136449983	136450123	reg1009592.p1	4.726	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	-480851	+	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	-480889	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	-535372	-	TSC_hg19_v1_chr3_-_136471221 BC040708 AB210023 AK309934 BC064699 CR749247 NM_005862	21162	-	BC050423 NM_001097599 NM_001097600 NM_025246 TSC_hg19_v1_chr3_+_136537897 BC022557 AK314079 BC000111 AL136661	87866	+	TSC_hg19_v1_chr3_+_136581071 NM_006153 BC006403	130987	+	S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##BC040708|STAG1|10274|stromal antigen 1##AB210023|STAG1|10274|stromal antigen 1##AK309934|STAG1|10274|stromal antigen 1##BC064699|STAG1|10274|stromal antigen 1##CR749247|STAG1|10274|stromal antigen 1##NM_005862|STAG1|10274|stromal antigen 1##BC050423|TMEM22|80723|transmembrane protein 22##NM_001097599|TMEM22|80723|transmembrane protein 22##NM_001097600|TMEM22|80723|transmembrane protein 22##NM_025246|TMEM22|80723|transmembrane protein 22##BC022557|TMEM22|80723|transmembrane protein 22##AK314079|TMEM22|80723|transmembrane protein 22##BC000111|TMEM22|80723|transmembrane protein 22##AL136661|TMEM22|80723|transmembrane protein 22##NM_006153|NCK1|4690|NCK adaptor protein 1##BC006403|NCK1|4690|NCK adaptor protein 1	0.880676	0.0	denovo_WM_7:39:0.505	denovo_WM_7:42:0.357
chr14	74228347	74228464	reg1011896.p2	4.725	+	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-1440	-	BC015668 TSC_hg19_v1_chr14_-_74226640	-1767	-	CR457112 BC039577 AK290980 TSC_hg19_v1_chr14_-_74181085 AF320308 BC007712 NM_006029	-47644	-	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	25514	-	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	90184	+	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	124913	+	AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##BC015668|C14orf43|91748|chromosome 14 open reading frame 43##CR457112|PNMA1|9240|paraneoplastic antigen MA1##BC039577|PNMA1|9240|paraneoplastic antigen MA1##AK290980|PNMA1|9240|paraneoplastic antigen MA1##AF320308|PNMA1|9240|paraneoplastic antigen MA1##BC007712|PNMA1|9240|paraneoplastic antigen MA1##NM_006029|PNMA1|9240|paraneoplastic antigen MA1##NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410	0.0	0.0	
chr7	141264213	141264327	reg1009656.p1	4.725	+	NM_018238 TSC_hg19_v1_chr7_+_141251215 AK304502 AK001704 AK299131 AK222769 AJ278150 BC009775	-13113	+	NM_001195278	-490239	+	NM_053035 TSC_hg19_v1_chr7_-_140714792	-549484	-	TSC_hg19_v1_chr7_-_141401967 AB032973 NM_001080392 AB384573	137664	-	AK131218 NM_001105558	143882	+	TSC_hg19_v1_chr7_+_141438200 BC008402 BC093054 AK294393 AF277319 M94556 NM_003143 AK311200 AK313033 BC000895	173994	+	NM_018238|AGK|55750|acylglycerol kinase##AK304502|AGK|55750|acylglycerol kinase##AK001704|AGK|55750|acylglycerol kinase##AK299131|AGK|55750|acylglycerol kinase##AK222769|AGK|55750|acylglycerol kinase##AJ278150|AGK|55750|acylglycerol kinase##BC009775|AGK|55750|acylglycerol kinase##NM_001195278|LOC100507421|100507421|transmembrane protein 178-like##NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33##AB032973|KIAA1147|57189|KIAA1147##NM_001080392|KIAA1147|57189|KIAA1147##AK131218|WEE2|494551|WEE1 homolog 2 (S. pombe)##NM_001105558|WEE2|494551|WEE1 homolog 2 (S. pombe)##BC008402|SSBP1|6742|single-stranded DNA binding protein 1##BC093054|SSBP1|6742|single-stranded DNA binding protein 1##AK294393|SSBP1|6742|single-stranded DNA binding protein 1##AF277319|SSBP1|6742|single-stranded DNA binding protein 1##M94556|SSBP1|6742|single-stranded DNA binding protein 1##NM_003143|SSBP1|6742|single-stranded DNA binding protein 1##AK313033|SSBP1|6742|single-stranded DNA binding protein 1##BC000895|SSBP1|6742|single-stranded DNA binding protein 1	0.0	0.0	
chr15	78848602	78848730	reg1012947.p2	4.724	+	TSC_hg19_v1_chr15_+_78832790 D28362 BC030529 AL110100 BC022445 BC093069 BC047667 D00763	-15850	+	NM_001102667 NM_001102668 NM_002789 TSC_hg19_v1_chr15_+_78832785 BC005361 AK055714 AK315526	-15901	+	TSC_hg19_v1_chr15_+_78799930 NM_001013619 NM_001083612 AK126453 BC132753 BC144383	-48739	+	TSC_hg19_v1_chr15_+_78857888 NM_000745 BC033639 U62434 AF385586 M83712 CU689678 DQ893355 DQ896674 EU176798 Y08419	9278	+	AF385584 Y08418 BT006646 BT006897 CU674246 CU675253 M86383 M37981 TSC_hg19_v1_chr15_-_78913298 BC000513 BC001642 BC002996 U62432	64567	-	TSC_hg19_v1_chr15_-_78913532 BC098443 BC006114 NM_000743 NM_001166694	64906	-	D28362|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC030529|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AL110100|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC022445|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC093069|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC047667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D00763|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102668|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_002789|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC005361|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK055714|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK315526|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001013619|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##NM_001083612|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##AK126453|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC132753|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC144383|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##NM_000745|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##BC033639|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##U62434|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##AF385586|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##M83712|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ893355|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ896674|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##EU176798|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##Y08419|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##AF385584|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##Y08418|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006646|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006897|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##M37981|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC000513|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC001642|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC002996|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##U62432|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC098443|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC006114|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_000743|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_001166694|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3	0.999672	0.0	denovo_WM_7:-51:0.829
chr14	68742472	68742617	reg1008796.p1	4.723	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-456024	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-459245	-	AK315462 NM_152443	-573942	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	517176	-	NM_001244698 NM_004926	518086	-	NM_001244701 AB528867	520440	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr19	16655410	16655536	reg1010358.p1	4.723	+	TSC_hg19_v1_chr19_-_16653256 NM_006387	-2210	-	BC021294 TSC_hg19_v1_chr19_-_16653249	-2225	-	TSC_hg19_v1_chr19_-_16653240 AK296883	-2234	-	TSC_hg19_v1_chr19_-_16683205 BC062562 NM_024881	27723	-	TSC_hg19_v1_chr19_+_16683381 AK094229	27924	+	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	83527	-	NM_006387|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##BC021294|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##AK296883|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##BC062562|SLC35E1|79939|solute carrier family 35, member E1##NM_024881|SLC35E1|79939|solute carrier family 35, member E1##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26	0.625073	0.0	denovo_WM_7:-4:0.524
chr3	108778303	108778426	reg1011112.p1	4.723	+	AF110003 EU832759 GQ129299 AF110002 BC103993 BC103994 AB593147 NM_005459	-105753	-	AK291991 AJ240085 AF161547 NM_016388 BC025713 AJ224878	-236770	+	HQ258043 AM050721 BC113502 BC113528 BC069318 AF290873 AF323084 AY358655 NM_032579 TSC_hg19_v1_chr3_-_108476258	-302219	-	CU690636 BC050307 AK302642 AF084946 BC028680 NM_014429	58586	-	AK026416 TSC_hg19_v1_chr3_+_108855566	77199	+	BC018070 AY283672 NM_138815	256937	-	AF110003|GUCA1C|9626|guanylate cyclase activator 1C##EU832759|GUCA1C|9626|guanylate cyclase activator 1C##GQ129299|GUCA1C|9626|guanylate cyclase activator 1C##AF110002|GUCA1C|9626|guanylate cyclase activator 1C##BC103993|GUCA1C|9626|guanylate cyclase activator 1C##BC103994|GUCA1C|9626|guanylate cyclase activator 1C##AB593147|GUCA1C|9626|guanylate cyclase activator 1C##NM_005459|GUCA1C|9626|guanylate cyclase activator 1C##AK291991|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ240085|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AF161547|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##NM_016388|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##BC025713|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ224878|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##HQ258043|RETNLB|84666|resistin like beta##AM050721|RETNLB|84666|resistin like beta##BC113502|RETNLB|84666|resistin like beta##BC113528|RETNLB|84666|resistin like beta##BC069318|RETNLB|84666|resistin like beta##AF290873|RETNLB|84666|resistin like beta##AF323084|RETNLB|84666|resistin like beta##AY358655|RETNLB|84666|resistin like beta##NM_032579|RETNLB|84666|resistin like beta##BC050307|MORC1|27136|MORC family CW-type zinc finger 1##AK302642|MORC1|27136|MORC family CW-type zinc finger 1##AF084946|MORC1|27136|MORC family CW-type zinc finger 1##BC028680|MORC1|27136|MORC family CW-type zinc finger 1##NM_014429|MORC1|27136|MORC family CW-type zinc finger 1##AK026416|FLJ22763|401081|uncharacterized LOC401081##BC018070|DPPA2|151871|developmental pluripotency associated 2##AY283672|DPPA2|151871|developmental pluripotency associated 2##NM_138815|DPPA2|151871|developmental pluripotency associated 2	0.033877	0.0	
chrX	1624052	1624179	reg1012555.p1	4.723	+	AK301844 NM_001173473	-51464	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-52314	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-113146	-	BC043610 GQ280263 NM_178129 AK126147	31923	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	86414	+	NM_004043 U11090	90232	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.995618	0.0	denovo_WM_7:-76:0.455	denovo_WM_7:-77:0.455
chr1	116923476	116923647	reg1011839.p1	4.722	+	AK295095 NM_001160233	-7073	+	AK308418 TSC_hg19_v1_chr1_+_116916033 DQ891882 EU176649	-7483	+	TSC_hg19_v1_chr1_+_116915952 AK314777	-7613	+	AK296362 NM_001160234	2430	+	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	37629	-	TSC_hg19_v1_chr1_-_116961216 AK309389	37677	-	AK295095|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160233|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##AK308418|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##DQ891882|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##EU176649|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##AK314777|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK309389|ATP1A1OS|84852|ATP1A1 opposite strand	0.634732	0.0	denovo_WM_7:-3:0.582
chr12	857283	857463	reg1013395.p1	4.722	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-84658	-	TSC_hg19_v1_chr12_-_752800 AK298043	-104554	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-105195	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	4783	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	5383	+	BC013629 TSC_hg19_v1_chr12_+_1017145	159709	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	1.992699	0.0	denovo_WM_7:-1:0.238	denovo_WM_7:-2:0.239	denovo_WM_7:-3:0.239	denovo_WM_7:-4:0.239
chr19	47417242	47417368	reg1012841.p1	4.722	+	BC006337 TSC_hg19_v1_chr19_-_47354069 AK312003 NM_004069 NM_021575	-63174	-	AF105230 TSC_hg19_v1_chr19_-_47291850 AB209738 AF105423 NM_005628 U53347 AK292690	-125583	-	AF334818 GQ919058 AB527629 CU674018 DQ892148 DQ895345 AF102826 TSC_hg19_v1_chr19_-_47291260 BC000062 AK125222	-126032	-	AB051509 AF159851 BC131565 BC150257 NM_004491	4627	+	TSC_hg19_v1_chr19_+_47523068 BC039016	105771	+	AB054002 NM_002517 U77968	106906	+	BC006337|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AK312003|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_004069|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##NM_021575|AP2S1|1175|adaptor-related protein complex 2, sigma 1 subunit##AF105230|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB209738|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF105423|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##NM_005628|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##U53347|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK292690|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF334818|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##GQ919058|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ892148|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##DQ895345|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AF102826|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##BC000062|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AK125222|SLC1A5|6510|solute carrier family 1 (neutral amino acid transporter), member 5##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1	0.0	0.0	
chr13	107026467	107026647	reg1002969.p1	4.721	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-907966	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	-908253	+	NM_000452 U10417	-3307362	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	160792	-	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	193928	-	NM_001080396	1492902	-	NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A	0.0	0.0	
chr1	35325470	35325627	reg1010184.p1	4.721	+	BX648912 BC107421 NM_001164825 TSC_hg19_v1_chr1_-_35325339 BC011880 BC073851 AK074853 BC064320 NM_138428	-173	-	NM_001164824 BC034598	-891	-	NM_002060 AK291563 AK313477 BC072389 BC027889 M96789	-66939	+	BC141907 TSC_hg19_v1_chr1_+_35331580	6009	+	NM_001080418 AB527430	45436	-	TSC_hg19_v1_chr1_-_35450919 CU688652 BC042172 BC029439	125362	-	BX648912|C1orf212|113444|chromosome 1 open reading frame 212##BC107421|C1orf212|113444|chromosome 1 open reading frame 212##NM_001164825|C1orf212|113444|chromosome 1 open reading frame 212##BC011880|C1orf212|113444|chromosome 1 open reading frame 212##BC073851|C1orf212|113444|chromosome 1 open reading frame 212##AK074853|C1orf212|113444|chromosome 1 open reading frame 212##BC064320|C1orf212|113444|chromosome 1 open reading frame 212##NM_138428|C1orf212|113444|chromosome 1 open reading frame 212##NM_001164824|C1orf212|113444|chromosome 1 open reading frame 212##BC034598|C1orf212|113444|chromosome 1 open reading frame 212##NM_002060|GJA4|2701|gap junction protein, alpha 4, 37kDa##AK291563|GJA4|2701|gap junction protein, alpha 4, 37kDa##BC072389|GJA4|2701|gap junction protein, alpha 4, 37kDa##BC027889|GJA4|2701|gap junction protein, alpha 4, 37kDa##M96789|GJA4|2701|gap junction protein, alpha 4, 37kDa##NM_001080418|DLGAP3|58512|discs, large (Drosophila) homolog-associated protein 3##BC029439|ZMYM6NB|100506144|ZMYM6 neighbor	0.0	0.82731	CTCF.p2:-43:0.827
chr2	102642173	102642346	reg1011729.p2	4.721	+	BC027733 BC012346 NM_173343	-26802	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-33896	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-133727	+	TSC_hg19_v1_chr2_+_102759205 X16896	116973	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	128161	+	AF284434 NM_003854 U49065 BC107064	161189	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.475699	0.0	denovo_WM_7:7:0.321
chr2	60780548	60780620	reg1003653.p1	4.721	+	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	-62	-	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	-2312102	-	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	-2506596	+	AF080216 TSC_hg19_v1_chr2_-_60780784	194	-	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	202900	+	TSC_hg19_v1_chr2_+_61108702 AK303926	328121	+	AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)	1.977466	0.0	denovo_WM_7:41:0.840	denovo_WM_7:56:0.705	denovo_WM_7:57:0.272
chr3	5268587	5268699	reg1010205.p2	4.721	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-39152	+	TSC_hg19_v1_chr3_+_5229430 D86967	-39210	+	BC019088 NM_014674 TSC_hg19_v1_chr3_+_5229369	-39280	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	1634156	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	1634255	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	3274687	-	DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##D86967|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##BC019088|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##NM_014674|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK124088|LOC100288428|100288428|uncharacterized LOC100288428	0.029119	0.0	
chr5	271424	271545	reg1008092.p2	4.721	+	TSC_hg19_v1_chr5_+_218463 AB208991 D30648 AB527409 CU674678 CU691944	-53023	+	BC001380 TSC_hg19_v1_chr5_+_218441 L21936	-53041	+	TSC_hg19_v1_chr5_+_218437 AK302524 AK295937 AK225027 AK291311	-53051	+	TSC_hg19_v1_chr5_+_271760 AK223366 AK315370 NM_013232 AK310347 AK295082 BC028242	247	+	TSC_hg19_v1_chr5_+_271772 BC012384 BC050597 BC110291 AK001917	284	+	AK308872 TSC_hg19_v1_chr5_+_271775 BC106706 U58773 DQ891163 DQ894344 BT020072	321	+	AB208991|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##D30648|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##BC001380|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##L21936|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK302524|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK295937|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK225027|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK291311|SDHA|6389|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)##AK223366|PDCD6|10016|programmed cell death 6##AK315370|PDCD6|10016|programmed cell death 6##NM_013232|PDCD6|10016|programmed cell death 6##AK310347|PDCD6|10016|programmed cell death 6##AK295082|PDCD6|10016|programmed cell death 6##BC028242|PDCD6|10016|programmed cell death 6##BC012384|PDCD6|10016|programmed cell death 6##BC050597|PDCD6|10016|programmed cell death 6##BC110291|PDCD6|10016|programmed cell death 6##AK001917|PDCD6|10016|programmed cell death 6##AK308872|PDCD6|10016|programmed cell death 6##BC106706|PDCD6|10016|programmed cell death 6##U58773|PDCD6|10016|programmed cell death 6##DQ891163|PDCD6|10016|programmed cell death 6##DQ894344|PDCD6|10016|programmed cell death 6##BT020072|PDCD6|10016|programmed cell death 6	0.0	0.0	
chr8	123931415	123931595	reg1001960.p2	4.721	+	TSC_hg19_v1_chr8_+_123794108 AB020661	-137402	+	BC042145 TSC_hg19_v1_chr8_+_123794000	-137511	+	TSC_hg19_v1_chr8_+_123793897 NM_014943	-137594	+	TSC_hg19_v1_chr8_+_123963651 EU446694 AB083653	32194	+	BC002457 TSC_hg19_v1_chr8_-_124054522	123002	-	AY358818 TSC_hg19_v1_chr8_-_124054540 AK303826	123035	-	AB020661|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##EU446694|ZHX2|22882|zinc fingers and homeoboxes 2##AB083653|ZHX2|22882|zinc fingers and homeoboxes 2##BC002457|DERL1|79139|Der1-like domain family, member 1##AY358818|DERL1|79139|Der1-like domain family, member 1##AK303826|DERL1|79139|Der1-like domain family, member 1	0.0	0.0	
chr9	12314679	12314797	reg1010039.p1	4.721	+	BC028038 NM_002839	-1702016	-	TSC_hg19_v1_chr9_+_8858136 AK094342	-3456605	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-3580819	-	NM_000550 X51420 BC052608	378687	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	460278	+	HQ257895 TSC_hg19_v1_chr9_+_12775847	461043	+	BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150##HQ257895|C9orf150|286343|chromosome 9 open reading frame 150	0.102917	0.0	
chrX	16731085	16731223	reg1010329.p1	4.721	+	TSC_hg19_v1_chrX_-_16730802 NM_175859 BC034986 AK125348 AF226667 AK024070 AK023549 NM_019857	-291	-	AK125332 NM_001144002	-815	-	L13220 NM_004057 X65869 BC112174	-62857	+	TSC_hg19_v1_chrX_+_16737703 NM_032796 CR749849	6537	+	TSC_hg19_v1_chrX_+_16737761 AK314675 AK303783 AF168955 AF338728 AK295322 AK027401 AK222856 BC001468 BC014657 AB528559 CU677083 EU831445	6635	+	TSC_hg19_v1_chrX_+_16804588 NM_001168683 NM_018360 AK002071 BC101572 BC101576 AY739713	73454	+	NM_175859|CTPS2|56474|CTP synthase II##BC034986|CTPS2|56474|CTP synthase II##AK125348|CTPS2|56474|CTP synthase II##AF226667|CTPS2|56474|CTP synthase II##AK024070|CTPS2|56474|CTP synthase II##AK023549|CTPS2|56474|CTP synthase II##NM_019857|CTPS2|56474|CTP synthase II##AK125332|CTPS2|56474|CTP synthase II##NM_001144002|CTPS2|56474|CTP synthase II##L13220|S100G|795|S100 calcium binding protein G##NM_004057|S100G|795|S100 calcium binding protein G##X65869|S100G|795|S100 calcium binding protein G##BC112174|S100G|795|S100 calcium binding protein G##NM_032796|SYAP1|94056|synapse associated protein 1##CR749849|SYAP1|94056|synapse associated protein 1##AK314675|SYAP1|94056|synapse associated protein 1##AK303783|SYAP1|94056|synapse associated protein 1##AF168955|SYAP1|94056|synapse associated protein 1##AF338728|SYAP1|94056|synapse associated protein 1##AK295322|SYAP1|94056|synapse associated protein 1##AK027401|SYAP1|94056|synapse associated protein 1##AK222856|SYAP1|94056|synapse associated protein 1##BC001468|SYAP1|94056|synapse associated protein 1##BC014657|SYAP1|94056|synapse associated protein 1##EU831445|SYAP1|94056|synapse associated protein 1##NM_001168683|TXLNG|55787|taxilin gamma##NM_018360|TXLNG|55787|taxilin gamma##AK002071|TXLNG|55787|taxilin gamma##BC101572|TXLNG|55787|taxilin gamma##BC101576|TXLNG|55787|taxilin gamma##AY739713|TXLNG|55787|taxilin gamma	0.999494	0.0	
chr10	12036163	12036275	reg1008674.p2	4.720	+	AK056703 TSC_hg19_v1_chr10_-_11936707	-99517	-	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	-170861	+	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	-251821	+	TSC_hg19_v1_chr10_-_12084777 BC054011 AK310925 BC114964 BC115737 BC090919 NM_015542 AF318574 AF301013 AK096191	48589	-	NM_080599 TSC_hg19_v1_chr10_-_12085142	48863	-	TSC_hg19_v1_chr10_+_12110952 NM_018706	74717	+	AK056703|LOC219731|219731|uncharacterized LOC219731##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK310925|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC114964|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC115737|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC090919|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_015542|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF318574|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF301013|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AK096191|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1	0.0	0.0	
chr12	115942260	115942440	reg1010439.p1	4.720	+	TSC_hg19_v1_chr12_-_115121970 AK054604 NM_005996 NM_016569	-820210	-	AB051068 AF221714 NM_000192 NM_080717 Y09445	-1096132	-	BC027942 NM_181486 TSC_hg19_v1_chr12_-_114843950	-1098426	-	TSC_hg19_v1_chr12_-_116714956 BC130422 AF515599 NM_015335	772600	-	TSC_hg19_v1_chr12_-_116715263 AY338463	772810	-	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	1028879	+	AK054604|TBX3|6926|T-box 3##NM_005996|TBX3|6926|T-box 3##NM_016569|TBX3|6926|T-box 3##AB051068|TBX5|6910|T-box 5##AF221714|TBX5|6910|T-box 5##NM_000192|TBX5|6910|T-box 5##NM_080717|TBX5|6910|T-box 5##Y09445|TBX5|6910|T-box 5##BC027942|TBX5|6910|T-box 5##NM_181486|TBX5|6910|T-box 5##BC130422|MED13L|23389|mediator complex subunit 13-like##AF515599|MED13L|23389|mediator complex subunit 13-like##NM_015335|MED13L|23389|mediator complex subunit 13-like##AY338463|MED13L|23389|mediator complex subunit 13-like##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173	0.999122	0.0	denovo_WM_7:13:0.443	denovo_WM_7:14:0.443
chr1	224401107	224401234	reg1008701.p1	4.720	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	-30183	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	-30248	+	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	-99360	+	TSC_hg19_v1_chr1_-_224517875 BC012105 AK298244 AK297396 AK298826 AK293923 AK297070 BC005897 U78772 U68140 NM_001243146 NM_001243147 NM_002533 NM_206840	116682	-	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	143399	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	143422	+	AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC012105|NVL|4931|nuclear VCP-like##AK298244|NVL|4931|nuclear VCP-like##AK297396|NVL|4931|nuclear VCP-like##AK298826|NVL|4931|nuclear VCP-like##AK293923|NVL|4931|nuclear VCP-like##AK297070|NVL|4931|nuclear VCP-like##BC005897|NVL|4931|nuclear VCP-like##U78772|NVL|4931|nuclear VCP-like##U68140|NVL|4931|nuclear VCP-like##NM_001243146|NVL|4931|nuclear VCP-like##NM_001243147|NVL|4931|nuclear VCP-like##NM_002533|NVL|4931|nuclear VCP-like##NM_206840|NVL|4931|nuclear VCP-like##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)	0.997786	0.0	denovo_WM_7:-42:0.880
chr16	13646839	13646993	reg1001573.p2	4.720	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-651448	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-749197	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-749265	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	367115	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	518170	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	633602	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.0	0.0	
chr5	6737947	6738086	reg1013104.p2	4.720	+	NM_001171805 NM_006999 AF089896 BC084567	-23266	+	M32313 TSC_hg19_v1_chr5_+_6633683 BT006834 CU679027 DQ891537 DQ894726	-104342	+	AF113128 AK297208 AK297511 TSC_hg19_v1_chr5_+_6633541 AK313070 BC007033 AF052126 BC008673 AK315996 BC006373	-104460	+	AK308405 NM_001171806 AK303516	8106	+	TSC_hg19_v1_chr5_+_7396319 NM_020546 AF410885 AK127036 BC111743 AK304041	658252	+	BC053548 BC104204 BC104205 BC115361 NM_001089584	1113243	-	NM_001171805|PAPD7|11044|PAP associated domain containing 7##NM_006999|PAPD7|11044|PAP associated domain containing 7##AF089896|PAPD7|11044|PAP associated domain containing 7##BC084567|PAPD7|11044|PAP associated domain containing 7##M32313|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BT006834|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##DQ891537|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##DQ894726|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AF113128|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK297208|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK297511|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK313070|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BC007033|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AF052126|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BC008673|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK315996|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##BC006373|SRD5A1|6715|steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)##AK308405|PAPD7|11044|PAP associated domain containing 7##NM_001171806|PAPD7|11044|PAP associated domain containing 7##AK303516|PAPD7|11044|PAP associated domain containing 7##NM_020546|ADCY2|108|adenylate cyclase 2 (brain)##AF410885|ADCY2|108|adenylate cyclase 2 (brain)##AK127036|ADCY2|108|adenylate cyclase 2 (brain)##BC111743|ADCY2|108|adenylate cyclase 2 (brain)##AK304041|ADCY2|108|adenylate cyclase 2 (brain)##BC053548|C5orf49|134121|chromosome 5 open reading frame 49##BC104204|C5orf49|134121|chromosome 5 open reading frame 49##BC104205|C5orf49|134121|chromosome 5 open reading frame 49##BC115361|C5orf49|134121|chromosome 5 open reading frame 49##NM_001089584|C5orf49|134121|chromosome 5 open reading frame 49	0.996284	0.0	denovo_WM_7:14:0.249	denovo_WM_7:15:0.249	denovo_WM_7:16:0.249	denovo_WM_7:17:0.249
chr11	75548359	75548510	reg1010074.p1	4.719	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-22156	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-22212	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-68511	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	369078	-	TSC_hg19_v1_chr11_-_75921806 AK075540	373370	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	543574	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.999559	0.0	
chr12	121972525	121972705	reg1010793.p2	4.719	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-67541	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-134651	+	AK025614 NM_001137559	-180604	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	45644	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	46299	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	92028	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	0.988233	0.0	denovo_WM_7:4:0.988
chr14	74037559	74037707	reg1004162.p2	4.719	+	TSC_hg19_v1_chr14_+_74035979 DQ893488 DQ896406 BC004436 BC006500 L40401 AY005822 CU678722	-1636	+	AK001939 DQ082755 AK223635 NM_006821 BC006335 TSC_hg19_v1_chr14_+_74035788	-1858	+	AK093515 AX748177 BC047590 NM_001220484 NM_203309	-11987	-	BC090945 NM_152331	20776	+	DQ082756 NM_001037162	45914	+	NM_001201366 NM_031427 AF542071 BC005343 AL833654 AK315392	74020	+	DQ893488|ACOT2|10965|acyl-CoA thioesterase 2##DQ896406|ACOT2|10965|acyl-CoA thioesterase 2##BC004436|ACOT2|10965|acyl-CoA thioesterase 2##BC006500|ACOT2|10965|acyl-CoA thioesterase 2##L40401|ACOT2|10965|acyl-CoA thioesterase 2##AY005822|ACOT2|10965|acyl-CoA thioesterase 2##AK001939|ACOT2|10965|acyl-CoA thioesterase 2##DQ082755|ACOT2|10965|acyl-CoA thioesterase 2##AK223635|ACOT2|10965|acyl-CoA thioesterase 2##NM_006821|ACOT2|10965|acyl-CoA thioesterase 2##BC006335|ACOT2|10965|acyl-CoA thioesterase 2##AK093515|HEATR4|399671|HEAT repeat containing 4##BC047590|HEATR4|399671|HEAT repeat containing 4##NM_001220484|HEATR4|399671|HEAT repeat containing 4##NM_203309|HEATR4|399671|HEAT repeat containing 4##BC090945|ACOT4|122970|acyl-CoA thioesterase 4##NM_152331|ACOT4|122970|acyl-CoA thioesterase 4##DQ082756|ACOT6|641372|acyl-CoA thioesterase 6##NM_001037162|ACOT6|641372|acyl-CoA thioesterase 6##NM_001201366|DNAL1|83544|dynein, axonemal, light chain 1##NM_031427|DNAL1|83544|dynein, axonemal, light chain 1##AF542071|DNAL1|83544|dynein, axonemal, light chain 1##BC005343|DNAL1|83544|dynein, axonemal, light chain 1##AL833654|DNAL1|83544|dynein, axonemal, light chain 1##AK315392|DNAL1|83544|dynein, axonemal, light chain 1	1.991355	0.0	denovo_WM_7:-14:0.239	denovo_WM_7:-15:0.239	denovo_WM_7:-16:0.239	denovo_WM_7:-17:0.239	denovo_WM_7:54:0.527	denovo_WM_7:55:0.470
chr19	50241740	50241875	reg1013926.p1	4.719	+	TSC_hg19_v1_chr19_+_50194833 AK299866	-46973	+	TSC_hg19_v1_chr19_+_50194384 NM_001136052 NM_001199752 NM_001199753 NM_152359 AK096516 AK289713 AK309087 AK290092 BC029104 AF357970	-47421	+	AL359598 TSC_hg19_v1_chr19_+_50192561	-49307	+	NM_021733 BC058862	24721	-	TSC_hg19_v1_chr19_+_50270224 NM_014203 NM_130787 AK302005	28344	+	AK124343 TSC_hg19_v1_chr19_+_50270264	28456	+	AK299866|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001136052|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001199752|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_001199753|CPT1C|126129|carnitine palmitoyltransferase 1C##NM_152359|CPT1C|126129|carnitine palmitoyltransferase 1C##AK096516|CPT1C|126129|carnitine palmitoyltransferase 1C##AK289713|CPT1C|126129|carnitine palmitoyltransferase 1C##AK309087|CPT1C|126129|carnitine palmitoyltransferase 1C##AK290092|CPT1C|126129|carnitine palmitoyltransferase 1C##BC029104|CPT1C|126129|carnitine palmitoyltransferase 1C##AF357970|CPT1C|126129|carnitine palmitoyltransferase 1C##AL359598|C19orf76|199800|chromosome 19 open reading frame 76##NM_021733|TSKS|60385|testis-specific serine kinase substrate##BC058862|TSKS|60385|testis-specific serine kinase substrate##NM_014203|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##NM_130787|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AK302005|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit##AK124343|AP2A1|160|adaptor-related protein complex 2, alpha 1 subunit	0.012178	0.0	
chr7	10993192	10993324	reg1008298.p2	4.719	+	AK130950 TSC_hg19_v1_chr7_-_10979760 AK024837 U94586 BC105295 NM_002489	-13474	-	CR407618 CR541716 TSC_hg19_v1_chr7_-_10979730 AF201077 BC101794 BC101796	-13549	-	AK315141 TSC_hg19_v1_chr7_+_8474016 AK091655 BC047505 AK296248	-2519138	+	TSC_hg19_v1_chr7_+_11013534 AK294419 NM_014660 AK295461 AB018326 BC152414	20252	+	TSC_hg19_v1_chr7_-_11871825 AK092252 AX747433 NM_015204	878531	-	TSC_hg19_v1_chr7_+_12250952 NM_001134232 NM_018374 AK311651 AK002135 BC033901 BC028108 BC039741 AK223263	1257667	+	AK130950|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK024837|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##U94586|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC105295|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##NM_002489|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##CR407618|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##CR541716|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AF201077|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC101794|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC101796|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK315141|NXPH1|30010|neurexophilin 1##AK091655|NXPH1|30010|neurexophilin 1##BC047505|NXPH1|30010|neurexophilin 1##AK296248|NXPH1|30010|neurexophilin 1##AK294419|PHF14|9678|PHD finger protein 14##NM_014660|PHF14|9678|PHD finger protein 14##AK295461|PHF14|9678|PHD finger protein 14##AB018326|PHF14|9678|PHD finger protein 14##BC152414|PHF14|9678|PHD finger protein 14##AK092252|THSD7A|221981|thrombospondin, type I, domain containing 7A##NM_015204|THSD7A|221981|thrombospondin, type I, domain containing 7A##NM_001134232|TMEM106B|54664|transmembrane protein 106B##NM_018374|TMEM106B|54664|transmembrane protein 106B##AK311651|TMEM106B|54664|transmembrane protein 106B##AK002135|TMEM106B|54664|transmembrane protein 106B##BC033901|TMEM106B|54664|transmembrane protein 106B##BC028108|TMEM106B|54664|transmembrane protein 106B##BC039741|TMEM106B|54664|transmembrane protein 106B##AK223263|TMEM106B|54664|transmembrane protein 106B	0.996942	0.0	denovo_WM_7:33:0.841
chr7	30241104	30241284	reg1003872.p2	4.719	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	-66612	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-172903	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-173193	+	AF513707 NM_147128	82728	+	TSC_hg19_v1_chr7_+_30324515 AF527533	83355	+	TSC_hg19_v1_chr7_+_30324634 AY054122	83462	+	NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AY054122|ZNRF2|223082|zinc and ring finger 2	0.0	0.0	
chr8	94815990	94816170	reg1012283.p1	4.719	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-48966	+	TSC_hg19_v1_chr8_-_94753214 NM_203390	-62853	-	BC039260 TSC_hg19_v1_chr8_-_94753192	-62889	-	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	113100	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	113955	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	404714	-	AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##NM_203390|RBM12B|389677|RNA binding motif protein 12B##BC039260|RBM12B|389677|RNA binding motif protein 12B##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)	1.016745	0.0	denovo_WM_7:35:0.975
chr9	16544842	16544983	reg1015181.p1	4.719	+	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	-991891	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-1033952	-	AF098483 AF098482 NM_021144	-1034665	-	TSC_hg19_v1_chr9_-_16727889 AY438376	182985	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	325755	-	TSC_hg19_v1_chr9_-_16870747 CR933649 AK299073 NM_017637	325854	-	AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AY438376|BNC2|54796|basonuclin 2##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2##CR933649|BNC2|54796|basonuclin 2##AK299073|BNC2|54796|basonuclin 2##NM_017637|BNC2|54796|basonuclin 2	0.997702	0.0	denovo_WM_7:-95:0.449	denovo_WM_7:-96:0.449
chr10	26719971	26720151	reg1010704.p2	4.718	+	M74826 BC029517 M81882 TSC_hg19_v1_chr10_+_26505702 BC126327 BC126329 AB527954 HQ258311	-214396	+	NM_000818 NM_001134366	-214826	+	AK310494 TSC_hg19_v1_chr10_+_26223169 AF229172 AY101367 BC036079 BC045538	-496881	+	TSC_hg19_v1_chr10_+_26727269 NM_019043	7210	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	7256	+	TSC_hg19_v1_chr10_+_26727679 BC054516	7607	+	M74826|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC029517|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##M81882|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126327|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126329|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##HQ258311|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_000818|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_001134366|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##AK310494|MYO3A|53904|myosin IIIA##AF229172|MYO3A|53904|myosin IIIA##AY101367|MYO3A|53904|myosin IIIA##BC036079|MYO3A|53904|myosin IIIA##BC045538|MYO3A|53904|myosin IIIA##NM_019043|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	1.030048	0.0	denovo_WM_7:66:0.479	denovo_WM_7:67:0.428
chr22	47833061	47833181	reg1011975.p1	4.718	+	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	-674521	+	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	-698966	-	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	-699042	-	AK093107 BC039485 TSC_hg19_v1_chr22_+_48027549	194382	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	1052159	+	AK125256 NM_015381 AK123443 AY358847	1139040	+	NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##AK093107|LOC284930|284930|uncharacterized LOC284930##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5	0.964689	0.0	denovo_WM_7:35:0.965
chr2	42351354	42351504	reg1008184.p1	4.718	+	AB528999 TSC_hg19_v1_chr2_+_42275979	-75468	+	TSC_hg19_v1_chr2_+_42275160 NM_138370	-76297	+	AK124893 NM_001242815	-170487	-	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	45146	+	AF127788 BT007371 CR542208 CU675543 DQ890566 DQ893729 TSC_hg19_v1_chr2_-_42588354 AB007618 BC005251 BC007095 NM_004718	236904	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	369129	-	NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4##AF127788|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BT007371|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##CR542208|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ890566|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ893729|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB007618|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC005251|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC007095|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##NM_004718|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3	0.996324	0.0	denovo_WM_7:56:0.441	denovo_WM_7:57:0.441
chr9	130081744	130081843	reg1008507.p1	4.718	+	NM_032293 AK293732 AK095679	-54986	+	TSC_hg19_v1_chr9_-_129885015 NM_012098 AY358274	-196763	-	TSC_hg19_v1_chr9_-_129884962 AK312876	-196831	-	TSC_hg19_v1_chr9_+_130159479 BC019043 NM_014580 Y17801 AJ245937 DQ892909 DQ896160 AF289587	77653	+	TSC_hg19_v1_chr9_-_130186602 AK124330	104773	-	NM_007135 TSC_hg19_v1_chr9_+_130186700 AK054606 BC062309 AK302284	104888	+	NM_032293|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK293732|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##AK095679|GARNL3|84253|GTPase activating Rap/RanGAP domain-like 3##NM_012098|ANGPTL2|23452|angiopoietin-like 2##AY358274|ANGPTL2|23452|angiopoietin-like 2##AK312876|ANGPTL2|23452|angiopoietin-like 2##BC019043|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_014580|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##Y17801|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AJ245937|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ892909|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##DQ896160|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##AF289587|SLC2A8|29988|solute carrier family 2 (facilitated glucose transporter), member 8##NM_007135|ZNF79|7633|zinc finger protein 79##AK054606|ZNF79|7633|zinc finger protein 79##BC062309|ZNF79|7633|zinc finger protein 79##AK302284|ZNF79|7633|zinc finger protein 79	0.989859	0.0	denovo_WM_7:-22:0.239	denovo_WM_7:-23:0.236	denovo_WM_7:-24:0.236	denovo_WM_7:-25:0.236
chr9	130352218	130352398	reg1011784.p1	4.718	+	TSC_hg19_v1_chr9_-_130341311 AF151783 NM_001035534	-11020	-	TSC_hg19_v1_chr9_-_130331353 BC110345 NM_022833 AF192911	-20913	-	AB210016 BC067366 TSC_hg19_v1_chr9_-_130331266	-21103	-	TSC_hg19_v1_chr9_+_130374555 NM_001032221 NM_003165 AK295154 AK293984 AK295802 AF004562 AF004563 BC015749 Y12723 D63851 DQ895426 EU176334 CU677423	22265	+	AK094948 NM_001012502 BC141809	116974	+	HQ257888 TSC_hg19_v1_chr9_-_130477940 BC032117 BC047012 NM_001002913	125634	-	AF151783|FAM129B|64855|family with sequence similarity 129, member B##NM_001035534|FAM129B|64855|family with sequence similarity 129, member B##BC110345|FAM129B|64855|family with sequence similarity 129, member B##NM_022833|FAM129B|64855|family with sequence similarity 129, member B##AF192911|FAM129B|64855|family with sequence similarity 129, member B##AB210016|FAM129B|64855|family with sequence similarity 129, member B##BC067366|FAM129B|64855|family with sequence similarity 129, member B##NM_001032221|STXBP1|6812|syntaxin binding protein 1##NM_003165|STXBP1|6812|syntaxin binding protein 1##AK295154|STXBP1|6812|syntaxin binding protein 1##AK293984|STXBP1|6812|syntaxin binding protein 1##AK295802|STXBP1|6812|syntaxin binding protein 1##AF004562|STXBP1|6812|syntaxin binding protein 1##AF004563|STXBP1|6812|syntaxin binding protein 1##BC015749|STXBP1|6812|syntaxin binding protein 1##Y12723|STXBP1|6812|syntaxin binding protein 1##D63851|STXBP1|6812|syntaxin binding protein 1##DQ895426|STXBP1|6812|syntaxin binding protein 1##EU176334|STXBP1|6812|syntaxin binding protein 1##AK094948|C9orf117|286207|chromosome 9 open reading frame 117##NM_001012502|C9orf117|286207|chromosome 9 open reading frame 117##BC141809|C9orf117|286207|chromosome 9 open reading frame 117##HQ257888|PTRH1|138428|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)##BC047012|PTRH1|138428|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)##NM_001002913|PTRH1|138428|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)	0.0	0.044299	
chr14	23264155	23264335	reg1009742.p2	4.717	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-28400	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-197056	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-206111	-	TSC_hg19_v1_chr14_-_23284568 AK025377	20334	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	20387	-	AB020532 BX161519 NM_001126105	20813	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	1.452955	0.0	denovo_WM_7:35:0.210	denovo_WM_7:55:0.249
chr19	58328273	58328342	reg1009984.p1	4.717	+	AK097041 AK293445 NM_024762	-2027	-	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-47178	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-47290	+	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	2780	+	AK122919 NM_001204818 AK299091	13363	+	NM_001204817 NM_032828 TSC_hg19_v1_chr19_+_58361208	32888	+	AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein##NM_001204817|ZNF587|84914|zinc finger protein 587##NM_032828|ZNF587|84914|zinc finger protein 587	0.990399	0.0	
chr4	113205882	113206030	reg1009132.p1	4.717	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-52872	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-139342	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1642678	-	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	1045	-	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	12571	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	231376	-	NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2	0.998853	0.0	denovo_WM_7:102:0.314	denovo_WM_7:103:0.314	denovo_WM_7:104:0.314
chr6	52272481	52272618	reg1005139.p2	4.717	+	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	-45592	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-122970	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-123029	-	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	12529	+	AK297632 NM_001172420	13255	+	DQ891068 DQ894250 D31762 TSC_hg19_v1_chr6_-_52441798	169209	-	NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ891068|TRAM2|9697|translocation associated membrane protein 2##DQ894250|TRAM2|9697|translocation associated membrane protein 2##D31762|TRAM2|9697|translocation associated membrane protein 2	1.993609	0.0	denovo_WM_7:-48:0.492	denovo_WM_7:-49:0.328	denovo_WM_7:-64:0.331	denovo_WM_7:-65:0.495
chr11	64633164	64633273	reg1011117.p1	4.716	+	AY648038 NM_017525 TSC_hg19_v1_chr11_-_64612110	-21129	-	AJ297488 AJ297489 NM_130803 NM_130804	-54453	-	TSC_hg19_v1_chr11_-_64578206 NM_000244 NM_130799 U93236 AJ297487 NM_130802	-55024	-	TSC_hg19_v1_chr11_-_64645987 AB384808 AY007161	12764	-	TSC_hg19_v1_chr11_-_64646097 AK300326 AK312316 AK299096 AK098723 AK297654 BC104799 BC104825 AF099011 AF001434 NM_006795	12936	-	AK302930 TSC_hg19_v1_chr11_-_64647140 AK097842	13943	-	AY648038|CDC42BPG|55561|CDC42 binding protein kinase gamma (DMPK-like)##NM_017525|CDC42BPG|55561|CDC42 binding protein kinase gamma (DMPK-like)##AJ297488|MEN1|4221|multiple endocrine neoplasia I##AJ297489|MEN1|4221|multiple endocrine neoplasia I##NM_130803|MEN1|4221|multiple endocrine neoplasia I##NM_130804|MEN1|4221|multiple endocrine neoplasia I##NM_000244|MEN1|4221|multiple endocrine neoplasia I##NM_130799|MEN1|4221|multiple endocrine neoplasia I##U93236|MEN1|4221|multiple endocrine neoplasia I##AJ297487|MEN1|4221|multiple endocrine neoplasia I##NM_130802|MEN1|4221|multiple endocrine neoplasia I##AY007161|EHD1|10938|EH-domain containing 1##AK300326|EHD1|10938|EH-domain containing 1##AK312316|EHD1|10938|EH-domain containing 1##AK299096|EHD1|10938|EH-domain containing 1##AK098723|EHD1|10938|EH-domain containing 1##AK297654|EHD1|10938|EH-domain containing 1##BC104799|EHD1|10938|EH-domain containing 1##BC104825|EHD1|10938|EH-domain containing 1##AF099011|EHD1|10938|EH-domain containing 1##AF001434|EHD1|10938|EH-domain containing 1##NM_006795|EHD1|10938|EH-domain containing 1##AK302930|EHD1|10938|EH-domain containing 1##AK097842|EHD1|10938|EH-domain containing 1	0.0	0.0	
chr12	27124995	27125175	reg1009023.p1	4.716	+	NM_001171887 NM_001171888 NM_015633 AK001534 TSC_hg19_v1_chr12_+_27091402 BC032143 AF161472	-33710	+	TSC_hg19_v1_chr12_-_27091213 NM_018164	-33855	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	-34176	-	TSC_hg19_v1_chr12_-_27167274 AK002031 AB032470 BC005176	42073	-	TSC_hg19_v1_chr12_-_27167318 AK023085	42236	-	TSC_hg19_v1_chr12_-_27167332 NM_016551	42250	-	NM_001171887|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_001171888|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_015633|FGFR1OP2|26127|FGFR1 oncogene partner 2##AK001534|FGFR1OP2|26127|FGFR1 oncogene partner 2##BC032143|FGFR1OP2|26127|FGFR1 oncogene partner 2##AF161472|FGFR1OP2|26127|FGFR1 oncogene partner 2##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK002031|TM7SF3|51768|transmembrane 7 superfamily member 3##AB032470|TM7SF3|51768|transmembrane 7 superfamily member 3##BC005176|TM7SF3|51768|transmembrane 7 superfamily member 3##AK023085|TM7SF3|51768|transmembrane 7 superfamily member 3##NM_016551|TM7SF3|51768|transmembrane 7 superfamily member 3	0.0	0.0	
chr1	249219056	249219151	reg1009435.p1	4.716	+	TSC_hg19_v1_chr1_+_249200433 AK123219 BC063785 NM_001017434 NM_170725 BX647065 AK298248	-18680	+	TSC_hg19_v1_chr1_-_249153285 NM_001193328 NM_017865	-65801	-	AK309421 AL133100 TSC_hg19_v1_chr1_-_249153150 AK302187 NM_001136036 AK001070 AK298899 BC002948 AK000538 AK225535	-66015	-	None	None	None	None	None	None	None	None	None	AK123219|PGBD2|267002|piggyBac transposable element derived 2##BC063785|PGBD2|267002|piggyBac transposable element derived 2##NM_001017434|PGBD2|267002|piggyBac transposable element derived 2##NM_170725|PGBD2|267002|piggyBac transposable element derived 2##BX647065|PGBD2|267002|piggyBac transposable element derived 2##AK298248|PGBD2|267002|piggyBac transposable element derived 2##NM_001193328|ZNF692|55657|zinc finger protein 692##NM_017865|ZNF692|55657|zinc finger protein 692##AK309421|ZNF692|55657|zinc finger protein 692##AL133100|ZNF692|55657|zinc finger protein 692##AK302187|ZNF692|55657|zinc finger protein 692##NM_001136036|ZNF692|55657|zinc finger protein 692##AK001070|ZNF692|55657|zinc finger protein 692##AK298899|ZNF692|55657|zinc finger protein 692##BC002948|ZNF692|55657|zinc finger protein 692##AK000538|ZNF692|55657|zinc finger protein 692##AK225535|ZNF692|55657|zinc finger protein 692	0.0	0.890274	CTCF.p2:3:0.890
chr17	65604581	65604739	reg1011886.p1	4.716	+	BC007905 NM_012417 NM_181671	-230737	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-231072	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-231251	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	109390	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	217042	+	AK293224 TSC_hg19_v1_chr17_+_65822221	217557	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.998499	0.0	denovo_WM_7:-43:0.457	denovo_WM_7:-44:0.457
chr2	111808607	111808740	reg1007104.p1	4.716	+	AK300513 NM_001142807 BC022268	-318494	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-372851	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-373030	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	69814	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	832953	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	833088	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.186654	0.0	
chr3	122977835	122977950	reg1011492.p2	4.716	+	NM_012430 TSC_hg19_v1_chr3_+_122920787 AK315771 AF100749	-57102	+	NM_006810 TSC_hg19_v1_chr3_+_122785922 BC001625 D49490	-191974	+	TSC_hg19_v1_chr3_-_122746605 AK309848	-231284	-	AK303070 NM_001199642	157296	-	AB527359 NM_183357	189499	-	TSC_hg19_v1_chr3_-_123303927 CU687458 AK289983 NM_198402 AK125375 BC060839 AY191814 BC049369	326041	-	NM_012430|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AK315771|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##AF100749|SEC22A|26984|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)##NM_006810|PDIA5|10954|protein disulfide isomerase family A, member 5##BC001625|PDIA5|10954|protein disulfide isomerase family A, member 5##D49490|PDIA5|10954|protein disulfide isomerase family A, member 5##AK309848|SEMA5B|54437|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B##AK303070|ADCY5|111|adenylate cyclase 5##NM_001199642|ADCY5|111|adenylate cyclase 5##NM_183357|ADCY5|111|adenylate cyclase 5##AK289983|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##NM_198402|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##BC060839|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##AY191814|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b##BC049369|PTPLB|201562|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	0.0	0.047458	
chr5	171741736	171741916	reg1008815.p1	4.716	+	NM_152277 TSC_hg19_v1_chr5_-_171710808	-31011	-	BC019910 TSC_hg19_v1_chr5_-_171710765 AK313274	-31122	-	NM_001171183	-120651	+	AB430862 DQ109556 BC038561 TSC_hg19_v1_chr5_-_171881387	139545	-	TSC_hg19_v1_chr5_-_171881518 AK128871 NM_001017995	139677	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	326427	+	NM_152277|UBTD2|92181|ubiquitin domain containing 2##BC019910|UBTD2|92181|ubiquitin domain containing 2##AK313274|UBTD2|92181|ubiquitin domain containing 2##NM_001171183|EFCAB9|285588|EF-hand calcium binding domain 9##AB430862|SH3PXD2B|285590|SH3 and PX domains 2B##DQ109556|SH3PXD2B|285590|SH3 and PX domains 2B##BC038561|SH3PXD2B|285590|SH3 and PX domains 2B##AK128871|SH3PXD2B|285590|SH3 and PX domains 2B##NM_001017995|SH3PXD2B|285590|SH3 and PX domains 2B##GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)	0.994087	0.0	denovo_WM_7:32:0.305	denovo_WM_7:33:0.305	denovo_WM_7:34:0.305
chr10	111970689	111970761	reg1003511.p1	4.715	+	BC012907 NM_001008541	-737	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-3366	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-202758	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	15096	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	93868	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	93975	-	BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1	0.0	0.0	
chr10	82142724	82142904	reg1001007.p1	4.715	+	AK093378 AX748088 NM_032372	-26257	+	BC019250 NM_138812 AK125908 AK292542	-26310	-	DQ891073 DQ894256 D49357 X69078 AK290820 BC018359 TSC_hg19_v1_chr10_-_82049413 NM_000429	-93509	-	NM_001243779	24770	+	TSC_hg19_v1_chr10_+_82168316 NM_001243780 NM_001243781 NM_032333 AK075447 AK074643 AK315440 AY359059	25489	+	NM_001243778 NM_001243782 TSC_hg19_v1_chr10_+_82173588 AK126292 AK225387 BC005871 BC071938	30779	+	AK093378|DYDC2|84332|DPY30 domain containing 2##NM_032372|DYDC2|84332|DPY30 domain containing 2##BC019250|DYDC1|143241|DPY30 domain containing 1##NM_138812|DYDC1|143241|DPY30 domain containing 1##AK125908|DYDC1|143241|DPY30 domain containing 1##AK292542|DYDC1|143241|DPY30 domain containing 1##DQ891073|MAT1A|4143|methionine adenosyltransferase I, alpha##DQ894256|MAT1A|4143|methionine adenosyltransferase I, alpha##D49357|MAT1A|4143|methionine adenosyltransferase I, alpha##X69078|MAT1A|4143|methionine adenosyltransferase I, alpha##AK290820|MAT1A|4143|methionine adenosyltransferase I, alpha##BC018359|MAT1A|4143|methionine adenosyltransferase I, alpha##NM_000429|MAT1A|4143|methionine adenosyltransferase I, alpha##NM_001243779|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243780|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243781|C10orf58|84293|chromosome 10 open reading frame 58##NM_032333|C10orf58|84293|chromosome 10 open reading frame 58##AK075447|C10orf58|84293|chromosome 10 open reading frame 58##AK074643|C10orf58|84293|chromosome 10 open reading frame 58##AK315440|C10orf58|84293|chromosome 10 open reading frame 58##AY359059|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243778|C10orf58|84293|chromosome 10 open reading frame 58##NM_001243782|C10orf58|84293|chromosome 10 open reading frame 58##AK126292|C10orf58|84293|chromosome 10 open reading frame 58##AK225387|C10orf58|84293|chromosome 10 open reading frame 58##BC005871|C10orf58|84293|chromosome 10 open reading frame 58##BC071938|C10orf58|84293|chromosome 10 open reading frame 58	0.0	0.0	
chr14	77279195	77279336	reg1011597.p1	4.715	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-3	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-55	-	BC051896 TSC_hg19_v1_chr14_+_77229090 AK291377 CU690882	-50213	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	13530	+	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	215419	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	215795	-	NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##BC051896|VASH1|22846|vasohibin 1##AK291377|VASH1|22846|vasohibin 1##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.0	0.0	
chr2	74403890	74404070	reg1013052.p2	4.715	+	AL122062 TSC_hg19_v1_chr2_-_74382411	-21599	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	-28760	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	-28962	-	AJ577474 CU678456 TSC_hg19_v1_chr2_-_74406014 AB016839 AK023321 AK001650 BC003398 NM_018221 AK021657	1927	-	AK057260 TSC_hg19_v1_chr2_-_74425749	21735	-	NM_006636 TSC_hg19_v1_chr2_+_74425741 AK300035 AK130664 AK222826 AK223041 AK302245 AK313138 BC015062 BC001548 BC017054 AB529041 X16396 DQ894679	21757	+	BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##AJ577474|MOB1A|55233|MOB kinase activator 1A##AB016839|MOB1A|55233|MOB kinase activator 1A##AK023321|MOB1A|55233|MOB kinase activator 1A##AK001650|MOB1A|55233|MOB kinase activator 1A##BC003398|MOB1A|55233|MOB kinase activator 1A##NM_018221|MOB1A|55233|MOB kinase activator 1A##AK021657|MOB1A|55233|MOB kinase activator 1A##NM_006636|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK300035|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK130664|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK222826|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK223041|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK302245|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##AK313138|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC015062|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC001548|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##BC017054|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##X16396|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase##DQ894679|MTHFD2|10797|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase	0.994505	0.0	denovo_WM_7:-81:0.780
chr11	60077041	60077150	reg1005402.p1	4.714	+	NM_001243266 NM_024021 NM_148975 AK292089 AK075081 TSC_hg19_v1_chr11_+_60048138 BC020648 CU676600 DQ891395 DQ894573 AB022821 AK314033 AB013102	-29002	+	AK291870 NM_001247999 NM_152852	-124957	-	AK301387 TSC_hg19_v1_chr11_-_59950526 AB013104 AF350502 AF350503 AF142409 BC022854 BC108728 AK026454 AF212240 AF237908 AF253977 AF261136 AF354930 AK300725 NM_022349 NM_152851	-126445	-	BC101783 AF333758 AF354931 BC069322 NM_139249 GQ129453 GQ129454 AF354933 BC034588 AF354932	25287	+	AK075106 NM_021201 NM_206938 NM_206939 NM_206940 AK297027 TSC_hg19_v1_chr11_+_60146004 BC043485 AF309653 AK309884	68892	+	TSC_hg19_v1_chr11_+_60146063 BC020673 AF237916 AF201951 AF350501	68964	+	NM_001243266|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_024021|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_148975|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK292089|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK075081|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##BC020648|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ891395|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ894573|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB022821|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK314033|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB013102|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK291870|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_001247999|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_152852|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK301387|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AB013104|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF350502|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF350503|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF142409|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##BC022854|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##BC108728|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK026454|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF212240|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF237908|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF253977|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF261136|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AF354930|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK300725|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_022349|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_152851|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##BC101783|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF333758|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354931|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC069322|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##NM_139249|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129453|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129454|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354933|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC034588|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354932|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AK075106|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_021201|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206938|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206939|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206940|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK297027|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF309653|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK309884|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##BC020673|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF237916|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF201951|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF350501|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7	0.0	0.0	
chr14	89882299	89882479	reg1005223.p2	4.714	+	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-3613	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-591396	+	BC150639 NM_183387 BC032685 TSC_hg19_v1_chr14_-_89259288	-623179	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	1021	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	203206	-	BC001787 BX247991 AK298930 AK094740 NM_145231	538671	-	EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##BC150639|EML5|161436|echinoderm microtubule associated protein like 5##NM_183387|EML5|161436|echinoderm microtubule associated protein like 5##BC032685|EML5|161436|echinoderm microtubule associated protein like 5##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11	0.0	0.0	
chr16	85978873	85978968	reg1010021.p2	4.714	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-46134	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-145585	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-145615	+	TSC_hg19_v1_chr16_-_86542463 AK091834	563544	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	565236	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	565320	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.881226	0.0	denovo_WM_7:77:0.838
chr19	50804159	50804321	reg1008247.p1	4.714	+	BC007877 TSC_hg19_v1_chr19_+_50796867	-7396	+	BC018933 TSC_hg19_v1_chr19_+_50713879	-90389	+	TSC_hg19_v1_chr19_+_50706878 AY165122 BC129803 NM_001077186 NM_001145809 NM_024729 AK307783 AB290169	-97349	+	AF055989 NM_004977	28393	-	BC085008 BC006149 BC111705 BC040958 BC053864 BC065203 BC032360 AF090387 AF098485 AF200344 AK300884 BC019048 AK310134 TSC_hg19_v1_chr19_-_50848025	43752	-	AF090386 DQ891993 DQ895183 CU676086 AF200345 BC029397 AK308013 AK314364 BC017842 AF098484 NM_004851	64663	-	BC007877|MYH14|79784|myosin, heavy chain 14, non-muscle##BC018933|MYH14|79784|myosin, heavy chain 14, non-muscle##AY165122|MYH14|79784|myosin, heavy chain 14, non-muscle##BC129803|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001077186|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001145809|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_024729|MYH14|79784|myosin, heavy chain 14, non-muscle##AK307783|MYH14|79784|myosin, heavy chain 14, non-muscle##AB290169|MYH14|79784|myosin, heavy chain 14, non-muscle##AF055989|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_004977|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##BC085008|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC006149|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC111705|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC040958|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC053864|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC065203|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC032360|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF090387|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF098485|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF200344|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK300884|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC019048|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK310134|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF090386|NAPSA|9476|napsin A aspartic peptidase##DQ891993|NAPSA|9476|napsin A aspartic peptidase##DQ895183|NAPSA|9476|napsin A aspartic peptidase##AF200345|NAPSA|9476|napsin A aspartic peptidase##BC029397|NAPSA|9476|napsin A aspartic peptidase##AK308013|NAPSA|9476|napsin A aspartic peptidase##AK314364|NAPSA|9476|napsin A aspartic peptidase##BC017842|NAPSA|9476|napsin A aspartic peptidase##AF098484|NAPSA|9476|napsin A aspartic peptidase##NM_004851|NAPSA|9476|napsin A aspartic peptidase	0.711588	0.0	denovo_WM_7:-24:0.556
chr22	40931191	40931368	reg1008511.p1	4.714	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-71849	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-164624	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-164638	+	TSC_hg19_v1_chr22_-_41032681 AF368061	101374	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	101425	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	143942	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	1.090408	0.0	denovo_WM_7:80:0.256	denovo_WM_7:81:0.256	denovo_WM_7:82:0.256
chr1	32292872	32293052	reg1002590.p1	4.713	+	BC114430 AK131447 NM_144569 AK091016 AX746730	-11363	-	TSC_hg19_v1_chr1_-_32264318 AK095829	-28641	-	BC029069 AK096192 TSC_hg19_v1_chr1_-_32264233 BC007910	-28722	-	NM_001195100 NM_001195101	92296	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	110969	-	TSC_hg19_v1_chr1_-_32403992 NM_080391	111035	-	BC114430|SPOCD1|90853|SPOC domain containing 1##AK131447|SPOCD1|90853|SPOC domain containing 1##NM_144569|SPOCD1|90853|SPOC domain containing 1##AK091016|SPOCD1|90853|SPOC domain containing 1##AK095829|SPOCD1|90853|SPOC domain containing 1##BC029069|SPOCD1|90853|SPOC domain containing 1##BC007910|SPOCD1|90853|SPOC domain containing 1##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2	0.0	0.0	
chr19	7294698	7294878	reg1005803.p1	4.713	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-828	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-195237	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-225073	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	165219	+	TSC_hg19_v1_chr19_+_7460061 AB011093	165289	+	AK127045 NM_001130955	209785	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.986733	0.0	denovo_WM_7:17:0.763
chr5	77587148	77587229	reg1011529.p1	4.713	+	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	-515056	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-652674	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-652759	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	3237	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	3289	-	TSC_hg19_v1_chr5_-_77590495 U81504	3304	-	BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U81504|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.993241	0.020233	
chr9	16795404	16795471	reg1017485.p2	4.713	+	TSC_hg19_v1_chr9_-_16727889 AY438376	-67540	-	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	-1242416	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-1284477	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	75230	-	TSC_hg19_v1_chr9_-_16870747 CR933649 AK299073 NM_017637	75329	-	TSC_hg19_v1_chr9_+_17134988 AK303973 AK308837 BX647069 AK098502 NM_001114395 NM_017738	339580	+	AY438376|BNC2|54796|basonuclin 2##AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2##CR933649|BNC2|54796|basonuclin 2##AK299073|BNC2|54796|basonuclin 2##NM_017637|BNC2|54796|basonuclin 2##AK303973|CNTLN|54875|centlein, centrosomal protein##AK308837|CNTLN|54875|centlein, centrosomal protein##BX647069|CNTLN|54875|centlein, centrosomal protein##AK098502|CNTLN|54875|centlein, centrosomal protein##NM_001114395|CNTLN|54875|centlein, centrosomal protein##NM_017738|CNTLN|54875|centlein, centrosomal protein	0.99966	0.0	denovo_WM_7:-47:0.425	denovo_WM_7:-48:0.425
chr10	125859336	125859490	reg1009693.p1	4.712	+	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	-6260	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	-7514	-	BC137492 BC146862 AY358565 NM_198148	-207917	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	248060	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	248105	-	NM_001146340 TSC_hg19_v1_chr10_-_126138606	279164	-	BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##NM_001146340|NKX1-2|390010|NK1 homeobox 2	0.513531	0.0	denovo_WM_7:43:0.401
chr3	137019715	137019836	reg1012205.p1	4.712	+	AY358305 NM_144717 AK316084 AK296832 BC063696 BC033292 CU687808	-342945	+	NM_001190796 TSC_hg19_v1_chr3_+_136649346 AK301460	-370438	+	TSC_hg19_v1_chr3_+_136581074 X17576 AK312692	-438683	+	NM_004189 AK314127 TSC_hg19_v1_chr3_+_137483154	463372	+	AK098474 NM_001002026 AF349452	697904	+	AK298103 AY358479 TSC_hg19_v1_chr3_+_137728997 BC142708 BC146668 NM_016369 BC063845 AF221069	709228	+	AY358305|IL20RB|53833|interleukin 20 receptor beta##NM_144717|IL20RB|53833|interleukin 20 receptor beta##AK316084|IL20RB|53833|interleukin 20 receptor beta##AK296832|IL20RB|53833|interleukin 20 receptor beta##BC063696|IL20RB|53833|interleukin 20 receptor beta##BC033292|IL20RB|53833|interleukin 20 receptor beta##NM_001190796|NCK1|4690|NCK adaptor protein 1##AK301460|NCK1|4690|NCK adaptor protein 1##X17576|NCK1|4690|NCK adaptor protein 1##AK312692|NCK1|4690|NCK adaptor protein 1##NM_004189|SOX14|8403|SRY (sex determining region Y)-box 14##AK314127|SOX14|8403|SRY (sex determining region Y)-box 14##AK098474|CLDN18|51208|claudin 18##NM_001002026|CLDN18|51208|claudin 18##AF349452|CLDN18|51208|claudin 18##AK298103|CLDN18|51208|claudin 18##AY358479|CLDN18|51208|claudin 18##BC142708|CLDN18|51208|claudin 18##BC146668|CLDN18|51208|claudin 18##NM_016369|CLDN18|51208|claudin 18##BC063845|CLDN18|51208|claudin 18##AF221069|CLDN18|51208|claudin 18	0.485426	0.0	denovo_WM_7:-13:0.485
chr3	47341243	47341398	reg1010650.p1	4.712	+	NM_025010 TSC_hg19_v1_chr3_+_47324433 AK023765 AK291477 AK295292 BX537953 BC015962 AB527175 AM393269 AM393767 BC032620	-16892	+	BC015311 NM_001134878 NM_022342 NM_182902	-17025	-	AB384629 TSC_hg19_v1_chr3_-_47205422 AK131371 NM_014159	-135881	-	AB040904 NM_015466 TSC_hg19_v1_chr3_+_47422510 AK055157 AK299906 AK295888 AK289502 AB025194 AF290614 AK295877 BC089042	81212	+	TSC_hg19_v1_chr3_-_47517349 AK300311	176017	-	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	176112	-	NM_025010|KLHL18|23276|kelch-like 18 (Drosophila)##AK023765|KLHL18|23276|kelch-like 18 (Drosophila)##AK291477|KLHL18|23276|kelch-like 18 (Drosophila)##AK295292|KLHL18|23276|kelch-like 18 (Drosophila)##BX537953|KLHL18|23276|kelch-like 18 (Drosophila)##BC015962|KLHL18|23276|kelch-like 18 (Drosophila)##AM393269|KLHL18|23276|kelch-like 18 (Drosophila)##AM393767|KLHL18|23276|kelch-like 18 (Drosophila)##BC032620|KLHL18|23276|kelch-like 18 (Drosophila)##BC015311|KIF9|64147|kinesin family member 9##NM_001134878|KIF9|64147|kinesin family member 9##NM_022342|KIF9|64147|kinesin family member 9##NM_182902|KIF9|64147|kinesin family member 9##AK131371|SETD2|29072|SET domain containing 2##NM_014159|SETD2|29072|SET domain containing 2##AB040904|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_015466|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK055157|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK299906|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295888|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK289502|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AB025194|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AF290614|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295877|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##BC089042|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK300311|SCAP|22937|SREBF chaperone##AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone	1.993503	0.0	denovo_WM_7:4:0.847	denovo_WM_7:19:0.712	denovo_WM_7:20:0.275
chr6	138194696	138194815	reg1014039.p1	4.712	+	TSC_hg19_v1_chr6_-_138189314 AK124173	-5405	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	-6218	+	BC051352 AK096362 NM_175747	-379230	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	233813	-	TSC_hg19_v1_chr6_+_138483075 AB252196 NM_020340	288381	+	BC069109 NM_021635 AF189269 AF189270	344871	-	AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector##AB252196|KIAA1244|57221|KIAA1244##NM_020340|KIAA1244|57221|KIAA1244##BC069109|PBOV1|59351|prostate and breast cancer overexpressed 1##NM_021635|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189269|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189270|PBOV1|59351|prostate and breast cancer overexpressed 1	0.019152	0.0	
chr13	80387107	80387193	reg1001890.p1	4.711	+	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-331595	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	-331728	+	TSC_hg19_v1_chr13_+_80055257 NM_001161407 NM_019080 AB097019 AB097028 AB097029	-331879	+	BC004205 TSC_hg19_v1_chr13_-_80913114	525892	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	527914	-	TSC_hg19_v1_chr13_-_84456424 BC051738	4069275	-	AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##NM_001161407|NDFIP2|54602|Nedd4 family interacting protein 2##NM_019080|NDFIP2|54602|Nedd4 family interacting protein 2##AB097019|NDFIP2|54602|Nedd4 family interacting protein 2##AB097028|NDFIP2|54602|Nedd4 family interacting protein 2##AB097029|NDFIP2|54602|Nedd4 family interacting protein 2##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1	0.0	0.0	
chr14	100650623	100650752	reg1014659.p1	4.711	+	AY541700 BC063598 TSC_hg19_v1_chr14_-_100626009 NM_206918	-24716	-	AF131766 TSC_hg19_v1_chr14_+_100563847	-86854	+	TSC_hg19_v1_chr14_+_100531768 AF087843 BC032358 AF052504	-118892	+	NM_003403 TSC_hg19_v1_chr14_+_100705177	54455	+	TSC_hg19_v1_chr14_+_100705309 M77698	54625	+	TSC_hg19_v1_chr14_+_100705474 BC037308 M76541 BC020324 BC065366 AB464361 DQ891638 EU176600 CU691478	54819	+	AY541700|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##BC063598|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##NM_206918|DEGS2|123099|delta(4)-desaturase, sphingolipid 2##AF131766|EVL|51466|Enah/Vasp-like##AF087843|EVL|51466|Enah/Vasp-like##BC032358|EVL|51466|Enah/Vasp-like##AF052504|EVL|51466|Enah/Vasp-like##NM_003403|YY1|7528|YY1 transcription factor##M77698|YY1|7528|YY1 transcription factor##BC037308|YY1|7528|YY1 transcription factor##M76541|YY1|7528|YY1 transcription factor##BC020324|YY1|7528|YY1 transcription factor##BC065366|YY1|7528|YY1 transcription factor##DQ891638|YY1|7528|YY1 transcription factor##EU176600|YY1|7528|YY1 transcription factor	0.99834	0.0	denovo_WM_7:-25:0.457	denovo_WM_7:-26:0.457
chr1	43411006	43411143	reg1012415.p1	4.711	+	TSC_hg19_v1_chr1_+_43312304 AK296201	-98769	+	AK095184 TSC_hg19_v1_chr1_+_43312290	-98785	+	TSC_hg19_v1_chr1_+_43312284 AF131739	-98801	+	AB384810 BC118590 BC121804 TSC_hg19_v1_chr1_-_43424504 K03195	13348	-	TSC_hg19_v1_chr1_-_43424540 AK292791 AK293306 AK296736 AK312403 AB208987	13498	-	TSC_hg19_v1_chr1_-_43424834 NM_006516	13766	-	AK296201|ZNF691|51058|zinc finger protein 691##AF131739|ZNF691|51058|zinc finger protein 691##BC118590|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##BC121804|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##K03195|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK292791|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK293306|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK296736|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK312403|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AB208987|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##NM_006516|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1	0.0	0.0	
chr20	5574890	5575020	reg1007833.p1	4.711	+	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-279919	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-467260	+	TSC_hg19_v1_chr20_+_5107615 NM_003818 AK315489 Y16521 AK304763	-467433	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	16632	-	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	156111	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	317171	+	AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##NM_003818|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK315489|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##Y16521|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK304763|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)	0.815658	0.0	denovo_WM_7:-6:0.791
chr5	130602623	130602712	reg1002687.p3	4.711	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-2867	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-2899	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-2911	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	368090	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	368152	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	368211	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	1.985007	0.0	denovo_WM_7:89:0.248	denovo_WM_7:90:0.248	denovo_WM_7:91:0.248	denovo_WM_7:92:0.248
chr5	137743937	137744093	reg1009915.p1	4.711	+	TSC_hg19_v1_chr5_+_137688386 BC146788 AB029005 AB527166	-55580	+	TSC_hg19_v1_chr5_+_137688270 AF338242 NM_016604	-55735	+	TSC_hg19_v1_chr5_+_137673956 BC000259 AF251040	-70032	+	TSC_hg19_v1_chr5_+_137774760 AK056193 AK291101 AK223611 BC006218 NM_016606 AK293480 AK290547	30713	+	AY562240 TSC_hg19_v1_chr5_+_137774899 AF251041	30891	+	TSC_hg19_v1_chr5_+_137801167 AK298101 AK301065	57156	+	BC146788|KDM3B|51780|lysine (K)-specific demethylase 3B##AB029005|KDM3B|51780|lysine (K)-specific demethylase 3B##AF338242|KDM3B|51780|lysine (K)-specific demethylase 3B##NM_016604|KDM3B|51780|lysine (K)-specific demethylase 3B##BC000259|FAM53C|51307|family with sequence similarity 53, member C##AF251040|FAM53C|51307|family with sequence similarity 53, member C##AK056193|REEP2|51308|receptor accessory protein 2##AK291101|REEP2|51308|receptor accessory protein 2##AK223611|REEP2|51308|receptor accessory protein 2##BC006218|REEP2|51308|receptor accessory protein 2##NM_016606|REEP2|51308|receptor accessory protein 2##AK293480|REEP2|51308|receptor accessory protein 2##AK290547|REEP2|51308|receptor accessory protein 2##AY562240|REEP2|51308|receptor accessory protein 2##AF251041|REEP2|51308|receptor accessory protein 2##AK298101|EGR1|1958|early growth response 1##AK301065|EGR1|1958|early growth response 1	1.966566	0.023132	denovo_WM_7:19:0.214	denovo_WM_7:24:0.491	denovo_WM_7:70:0.412	denovo_WM_7:71:0.462
chr6	63824712	63824892	reg1008920.p2	4.711	+	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	-828801	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-5537123	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-6642387	+	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	205062	-	TSC_hg19_v1_chr6_+_64231650 CR749458	406853	+	TSC_hg19_v1_chr6_+_64281913 BC045571 NM_003463	457114	+	AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC045571|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##NM_003463|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.978487	0.0	denovo_WM_7:33:0.251	denovo_WM_7:34:0.582
chr10	75668694	75668825	reg1011416.p1	4.710	+	AB590440 L07044 DQ892365 DQ895574 DQ896692 TSC_hg19_v1_chr10_-_75634275 U66064 AK131199 AK095576 BC034044 AK225771 AK291704 AK301180 NM_001204492 NM_001222 NM_172169 NM_172170 NM_172171 NM_172173	-34440	-	TSC_hg19_v1_chr10_-_75571579 BC018681 AK303648 NM_003635	-97194	-	BC035711 TSC_hg19_v1_chr10_-_75571357 BC052780	-97385	-	NM_001145031 NM_002658 TSC_hg19_v1_chr10_+_75670889 AK297940 AK298560 AK312960	2118	+	BC013575 K03226 M15476 D00244 TSC_hg19_v1_chr10_+_75670948 X02760	2182	+	AB208961 TSC_hg19_v1_chr10_+_75673428	4628	+	L07044|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ892365|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ895574|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##DQ896692|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##U66064|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK131199|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK095576|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##BC034044|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK225771|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK291704|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##AK301180|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001204492|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_001222|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172169|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172170|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172171|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##NM_172173|CAMK2G|818|calcium/calmodulin-dependent protein kinase II gamma##BC018681|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##AK303648|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##NM_003635|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##BC035711|NDST2|8509|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2##NM_001145031|PLAU|5328|plasminogen activator, urokinase##NM_002658|PLAU|5328|plasminogen activator, urokinase##AK297940|PLAU|5328|plasminogen activator, urokinase##AK298560|PLAU|5328|plasminogen activator, urokinase##AK312960|PLAU|5328|plasminogen activator, urokinase##BC013575|PLAU|5328|plasminogen activator, urokinase##K03226|PLAU|5328|plasminogen activator, urokinase##M15476|PLAU|5328|plasminogen activator, urokinase##D00244|PLAU|5328|plasminogen activator, urokinase##X02760|PLAU|5328|plasminogen activator, urokinase##AB208961|PLAU|5328|plasminogen activator, urokinase	0.984969	0.0	denovo_WM_7:-16:0.256	denovo_WM_7:-17:0.729
chr1	36002417	36002563	reg1010982.p1	4.710	+	TSC_hg19_v1_chr1_-_35920081 AK090878	-82332	-	BX648067 TSC_hg19_v1_chr1_+_35851133	-151373	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-267862	+	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	20479	-	AK316252 TSC_hg19_v1_chr1_-_36023002	20513	-	TSC_hg19_v1_chr1_-_36023005 NM_024874	20541	-	AK090878|KIAA0319L|79932|KIAA0319-like##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like##AK316252|KIAA0319L|79932|KIAA0319-like##NM_024874|KIAA0319L|79932|KIAA0319-like	0.990373	0.0	denovo_WM_7:-5:0.571	denovo_WM_7:-6:0.369
chr16	30091679	30091790	reg1010811.p2	4.710	+	TSC_hg19_v1_chr16_+_30087347 X70218 BC001416 AF097996 NM_002720	-4366	+	TSC_hg19_v1_chr16_+_30077158 BC012880 BC015888 AK301993	-14571	+	TSC_hg19_v1_chr16_+_30077141 X05236 AK026577	-14602	+	BC026031 NM_004608 AK022330 TSC_hg19_v1_chr16_-_30103243	11513	-	BC005009 TSC_hg19_v1_chr16_-_30107535 BC050664 NM_031477 AB098737 NM_001145524 AF305622 AK022409	15811	-	TSC_hg19_v1_chr16_+_30107748 AK095480 BC048809	16034	+	X70218|PPP4C|5531|protein phosphatase 4, catalytic subunit##BC001416|PPP4C|5531|protein phosphatase 4, catalytic subunit##AF097996|PPP4C|5531|protein phosphatase 4, catalytic subunit##NM_002720|PPP4C|5531|protein phosphatase 4, catalytic subunit##BC012880|ALDOA|226|aldolase A, fructose-bisphosphate##BC015888|ALDOA|226|aldolase A, fructose-bisphosphate##AK301993|ALDOA|226|aldolase A, fructose-bisphosphate##X05236|ALDOA|226|aldolase A, fructose-bisphosphate##AK026577|ALDOA|226|aldolase A, fructose-bisphosphate##BC026031|TBX6|6911|T-box 6##NM_004608|TBX6|6911|T-box 6##AK022330|TBX6|6911|T-box 6##BC005009|YPEL3|83719|yippee-like 3 (Drosophila)##BC050664|YPEL3|83719|yippee-like 3 (Drosophila)##NM_031477|YPEL3|83719|yippee-like 3 (Drosophila)##AB098737|YPEL3|83719|yippee-like 3 (Drosophila)##NM_001145524|YPEL3|83719|yippee-like 3 (Drosophila)##AF305622|YPEL3|83719|yippee-like 3 (Drosophila)##AK022409|YPEL3|83719|yippee-like 3 (Drosophila)	2.041554	0.0	denovo_WM_7:101:0.239	denovo_WM_7:102:0.239	denovo_WM_7:103:0.239	denovo_WM_7:104:0.239
chr17	1117049	1117178	reg1007613.p2	4.710	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-26525	-	AK302682 AB384846 TSC_hg19_v1_chr17_-_1083048 NM_021962 U01147	-34044	-	TSC_hg19_v1_chr17_-_1029059 AK307827	-88039	-	NM_001164405	56744	+	AB090231 NM_172367 BC142615	65851	+	TSC_hg19_v1_chr17_-_1248347 L13388	131243	-	AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##AK302682|ABR|29|active BCR-related gene##NM_021962|ABR|29|active BCR-related gene##U01147|ABR|29|active BCR-related gene##AK307827|ABR|29|active BCR-related gene##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.838461	0.0	denovo_WM_7:78:0.483	denovo_WM_7:79:0.312
chr17	74495100	74495223	reg1007431.p1	4.710	+	AK303434 AY500247 AK292166 NM_001005498	-11263	-	NM_001088 U40347 AB593119 BC069434	-31504	+	BC092430 NM_001166579	-45729	+	TSC_hg19_v1_chr17_-_74497506 BC016034 AK292135 NM_024599	2298	-	AJ315162 AK098057 BC029798 AB057769 BC018822 NM_134268	38541	-	DQ390338 NM_001077620 BC146898 BC146904	40985	+	AK303434|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AY500247|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292166|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001005498|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001088|AANAT|15|aralkylamine N-acetyltransferase##U40347|AANAT|15|aralkylamine N-acetyltransferase##AB593119|AANAT|15|aralkylamine N-acetyltransferase##BC069434|AANAT|15|aralkylamine N-acetyltransferase##BC092430|AANAT|15|aralkylamine N-acetyltransferase##NM_001166579|AANAT|15|aralkylamine N-acetyltransferase##BC016034|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292135|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_024599|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AJ315162|CYGB|114757|cytoglobin##AK098057|CYGB|114757|cytoglobin##BC029798|CYGB|114757|cytoglobin##AB057769|CYGB|114757|cytoglobin##NM_134268|CYGB|114757|cytoglobin##DQ390338|PRCD|768206|progressive rod-cone degeneration##NM_001077620|PRCD|768206|progressive rod-cone degeneration##BC146898|PRCD|768206|progressive rod-cone degeneration##BC146904|PRCD|768206|progressive rod-cone degeneration	1.852779	0.0	denovo_WM_7:66:0.236	denovo_WM_7:69:0.450	denovo_WM_7:91:0.558
chr17	79851517	79851650	reg1010655.p3	4.710	+	TSC_hg19_v1_chr17_+_79849827 BC066308 NM_001002249	-1723	+	TSC_hg19_v1_chr17_+_79849631 AF151048 BC000607 BC095454 AF247789 BC171892 BC171898 BC171899 BC171900 BC104641	-1944	+	AK307214 TSC_hg19_v1_chr17_+_79849610 NM_001002244 NM_001002245 NM_001002246 NM_001002247 NM_001002248 NM_016476	-1980	+	BC126128 BC126485 BC146875 BC146890 NM_148896 AF525737 AB085942	8529	+	TSC_hg19_v1_chr17_-_79869052 AK297996 AK093328	17486	-	TSC_hg19_v1_chr17_-_79869276 AK301723 CR456779 CU674172 AY251539 BC000351 AK315777 D84307 BC010075 NM_001184917 NM_002861	17702	-	BC066308|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002249|ANAPC11|51529|anaphase promoting complex subunit 11##AF151048|ANAPC11|51529|anaphase promoting complex subunit 11##BC000607|ANAPC11|51529|anaphase promoting complex subunit 11##BC095454|ANAPC11|51529|anaphase promoting complex subunit 11##AF247789|ANAPC11|51529|anaphase promoting complex subunit 11##BC171892|ANAPC11|51529|anaphase promoting complex subunit 11##BC171898|ANAPC11|51529|anaphase promoting complex subunit 11##BC171899|ANAPC11|51529|anaphase promoting complex subunit 11##BC171900|ANAPC11|51529|anaphase promoting complex subunit 11##BC104641|ANAPC11|51529|anaphase promoting complex subunit 11##AK307214|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002244|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002245|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002246|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002247|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002248|ANAPC11|51529|anaphase promoting complex subunit 11##NM_016476|ANAPC11|51529|anaphase promoting complex subunit 11##BC126128|NPB|256933|neuropeptide B##BC126485|NPB|256933|neuropeptide B##BC146875|NPB|256933|neuropeptide B##BC146890|NPB|256933|neuropeptide B##NM_148896|NPB|256933|neuropeptide B##AF525737|NPB|256933|neuropeptide B##AB085942|NPB|256933|neuropeptide B##AK297996|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AK093328|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AK301723|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##CR456779|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AY251539|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##BC000351|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AK315777|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##D84307|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##BC010075|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##NM_001184917|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##NM_002861|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine	1.331035	0.0	denovo_WM_7:61:0.261
chr22	40420839	40421019	reg1012923.p2	4.710	+	TSC_hg19_v1_chr22_+_40390935 BC031099 NM_138435	-29985	+	AK303280 AK303657 AK312830 TSC_hg19_v1_chr22_+_40322634 AK303470	-98305	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	-123682	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	19980	+	TSC_hg19_v1_chr22_+_40441403 BC028626	20503	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	153070	+	BC031099|FAM83F|113828|family with sequence similarity 83, member F##NM_138435|FAM83F|113828|family with sequence similarity 83, member F##AK303280|GRAP2|9402|GRB2-related adaptor protein 2##AK303657|GRAP2|9402|GRB2-related adaptor protein 2##AK312830|GRAP2|9402|GRB2-related adaptor protein 2##AK303470|GRAP2|9402|GRB2-related adaptor protein 2##AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B	0.0	0.350839	CTCF.p2:40:0.326
chr3	46014097	46014259	reg1010598.p1	4.710	+	NM_006564 Y13248	-29206	+	NM_006641 NM_031200 AF145439 BC069678 AK312824 AK313366 AF145440 AF145207 AJ132337	-86123	+	TSC_hg19_v1_chr3_-_45883573 BC025988 AK024323 AJ297351 BC042483 NM_020347 BX640604	-130583	-	AJ292348 TSC_hg19_v1_chr3_-_46037309 AL832358 NM_024513	23143	-	AB189434 AB189435 NM_001024644 NM_005283	54800	-	BC064991 TSC_hg19_v1_chr3_-_46249804 L10918 BC051306 NM_001295	235631	-	NM_006564|CXCR6|10663|chemokine (C-X-C motif) receptor 6##Y13248|CXCR6|10663|chemokine (C-X-C motif) receptor 6##NM_006641|CCR9|10803|chemokine (C-C motif) receptor 9##NM_031200|CCR9|10803|chemokine (C-C motif) receptor 9##AF145439|CCR9|10803|chemokine (C-C motif) receptor 9##BC069678|CCR9|10803|chemokine (C-C motif) receptor 9##AK312824|CCR9|10803|chemokine (C-C motif) receptor 9##AK313366|CCR9|10803|chemokine (C-C motif) receptor 9##AF145440|CCR9|10803|chemokine (C-C motif) receptor 9##AF145207|CCR9|10803|chemokine (C-C motif) receptor 9##AJ132337|CCR9|10803|chemokine (C-C motif) receptor 9##BC025988|LZTFL1|54585|leucine zipper transcription factor-like 1##AK024323|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ297351|LZTFL1|54585|leucine zipper transcription factor-like 1##BC042483|LZTFL1|54585|leucine zipper transcription factor-like 1##NM_020347|LZTFL1|54585|leucine zipper transcription factor-like 1##BX640604|LZTFL1|54585|leucine zipper transcription factor-like 1##AJ292348|FYCO1|79443|FYVE and coiled-coil domain containing 1##AL832358|FYCO1|79443|FYVE and coiled-coil domain containing 1##NM_024513|FYCO1|79443|FYVE and coiled-coil domain containing 1##AB189434|XCR1|2829|chemokine (C motif) receptor 1##AB189435|XCR1|2829|chemokine (C motif) receptor 1##NM_001024644|XCR1|2829|chemokine (C motif) receptor 1##NM_005283|XCR1|2829|chemokine (C motif) receptor 1##BC064991|CCR1|1230|chemokine (C-C motif) receptor 1##L10918|CCR1|1230|chemokine (C-C motif) receptor 1##BC051306|CCR1|1230|chemokine (C-C motif) receptor 1##NM_001295|CCR1|1230|chemokine (C-C motif) receptor 1	0.911606	0.0	denovo_WM_7:-27:0.623	denovo_WM_7:-29:0.215
chr4	99843761	99843876	reg1009576.p1	4.710	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	-264059	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-661224	+	CU691442 BC036870 NM_174952	-779473	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	6442	-	M15353 TSC_hg19_v1_chr4_-_99850288	6473	-	NM_001130679 NM_001968 BC035166	7968	-	BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E##BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E	0.996294	0.0	denovo_WM_7:-104:0.448	denovo_WM_7:-105:0.448
chr5	72988001	72988108	reg1010435.p1	4.710	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-66069	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-126472	+	BC012917 TSC_hg19_v1_chr5_-_72861465 AF251051 NM_023039	-126595	-	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	121296	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	948409	-	AK096578 NM_003633	949194	-	AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##BC012917|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AF251051|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##NM_023039|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)	0.0	0.0	
chr6	84667377	84667496	reg1012020.p2	4.710	+	TSC_hg19_v1_chr6_+_84569438 AB527313 AM393033	-97972	+	TSC_hg19_v1_chr6_+_84569407 AK313146 BC025380 AL832113	-98034	+	TSC_hg19_v1_chr6_+_84569385 NM_016230	-98058	+	TSC_hg19_v1_chr6_+_84743459 AK090775 AX746611 NM_138409 BC010003 AK307078 AK292736 BC039855	75970	+	AB023226 AK308190 BC063632 NM_014895 TSC_hg19_v1_chr6_-_84937334	269888	-	TSC_hg19_v1_chr6_-_85472330 AJ010278	804889	-	AM393033|CYB5R4|51167|cytochrome b5 reductase 4##AK313146|CYB5R4|51167|cytochrome b5 reductase 4##BC025380|CYB5R4|51167|cytochrome b5 reductase 4##AL832113|CYB5R4|51167|cytochrome b5 reductase 4##NM_016230|CYB5R4|51167|cytochrome b5 reductase 4##AK090775|MRAP2|112609|melanocortin 2 receptor accessory protein 2##NM_138409|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC010003|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK307078|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK292736|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC039855|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AB023226|KIAA1009|22832|KIAA1009##AK308190|KIAA1009|22832|KIAA1009##BC063632|KIAA1009|22832|KIAA1009##NM_014895|KIAA1009|22832|KIAA1009##AJ010278|TBX18|9096|T-box 18	0.997502	0.0	
chr6	9540884	9540980	reg1010236.p1	4.710	+	TSC_hg19_v1_chr6_+_8435870 BC040612	-1105044	+	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	-1105224	-	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-1438142	-	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	871684	-	FJ794945 M61156 M36711 X52611 TSC_hg19_v1_chr6_-_10415305	874343	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	874536	-	BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##FJ794945|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M61156|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##M36711|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##X52611|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.0	0.982228	CTCF.p2:11:0.953
chr12	795114	795214	reg1009094.p2	4.709	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-22449	-	TSC_hg19_v1_chr12_-_752800 AK298043	-42345	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-42986	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	66992	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	67592	+	BC013629 TSC_hg19_v1_chr12_+_1017145	221918	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.994296	0.0	
chr15	52274566	52274746	reg1010724.p1	4.709	+	TSC_hg19_v1_chr15_-_52263976 BC018147 NM_138792 AK055762 AK297972 AY302186	-10694	-	TSC_hg19_v1_chr15_+_52201590 AK025704	-73046	+	TSC_hg19_v1_chr15_+_52121876 BX647277 AF177171 BC020542	-152637	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	36763	+	TSC_hg19_v1_chr15_+_52311432 CR749401	36778	+	TSC_hg19_v1_chr15_+_52311442 BC035492	36805	+	BC018147|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##NM_138792|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK055762|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK297972|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AY302186|LEO1|123169|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK025704|TMOD3|29766|tropomodulin 3 (ubiquitous)##BX647277|TMOD3|29766|tropomodulin 3 (ubiquitous)##AF177171|TMOD3|29766|tropomodulin 3 (ubiquitous)##BC020542|TMOD3|29766|tropomodulin 3 (ubiquitous)##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##BC035492|MAPK6|5597|mitogen-activated protein kinase 6	0.0	0.471262	CTCF.p2:-16:0.471
chr16	46775597	46775723	reg1011145.p1	4.709	+	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-52063	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-52095	+	TSC_hg19_v1_chr16_-_46723112 NM_018206	-52533	-	AB451455 BC109096 BC109097 AJ247087 NM_182493	6502	-	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	89428	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	142621	+	AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##NM_018206|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.993792	0.0	denovo_WM_7:30:0.248	denovo_WM_7:31:0.248	denovo_WM_7:32:0.248	denovo_WM_7:33:0.248
chr11	121312236	121312368	reg1012968.p1	4.708	+	TSC_hg19_v1_chr11_+_121163523 BC050427 NM_001024956 BC012333	-148748	+	TSC_hg19_v1_chr11_+_121163484 AK096847 AK223141 AK222686	-148820	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	-148897	+	TSC_hg19_v1_chr11_+_121323026 NM_003105 Y08110 BC137171 AB463277	10647	+	TSC_hg19_v1_chr11_+_121323112 AK309523	10873	+	TSC_hg19_v1_chr11_+_121461071 AK294404	148796	+	BC050427|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_001024956|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##BC012333|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK096847|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK223141|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK222686|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_003105|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##Y08110|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC137171|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##AK309523|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##AK294404|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing	0.993414	0.0	
chr1	112135585	112135740	reg1010875.p1	4.708	+	BC041707 BC064411 NM_001081976	-29083	-	NM_000677 NM_020683	-88920	-	TSC_hg19_v1_chr1_+_112016601 BC017973 NM_174896	-119064	+	TSC_hg19_v1_chr1_+_112162449 NM_001010935 NM_002884 BC014086	26805	+	AB528568 CU689180 AL137198 AK295012 BC031558 TSC_hg19_v1_chr1_-_112282012 AK055667 NM_019099	146293	-	TSC_hg19_v1_chr1_+_112298189 NM_007204 BC034953 AF171063	162557	+	BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##BC017973|C1orf162|128346|chromosome 1 open reading frame 162##NM_174896|C1orf162|128346|chromosome 1 open reading frame 162##NM_001010935|RAP1A|5906|RAP1A, member of RAS oncogene family##NM_002884|RAP1A|5906|RAP1A, member of RAS oncogene family##BC014086|RAP1A|5906|RAP1A, member of RAS oncogene family##AL137198|FAM212B|55924|family with sequence similarity 212, member B##AK295012|FAM212B|55924|family with sequence similarity 212, member B##BC031558|FAM212B|55924|family with sequence similarity 212, member B##AK055667|FAM212B|55924|family with sequence similarity 212, member B##NM_019099|FAM212B|55924|family with sequence similarity 212, member B##NM_007204|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC034953|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF171063|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	0.018253	0.0	
chr1	9344295	9344375	reg1010434.p1	4.708	+	CR749282 TSC_hg19_v1_chr1_+_9299950	-44397	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	-49418	+	TSC_hg19_v1_chr1_+_9294832 BC081559	-49520	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	8602	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	8634	+	TSC_hg19_v1_chr1_+_9415945 CU677397	71611	+	CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1	0.879349	0.0	denovo_WM_7:-2:0.596
chr1	14029283	14029394	reg1010253.p1	4.706	+	TSC_hg19_v1_chr1_+_14026688 BC014468 NM_001135610	-2614	+	NM_001006624 NM_001006625	-117372	+	NM_006474 NM_198389 BC014668 BC022812 TSC_hg19_v1_chr1_+_13910326 AY194238 AK075327 AK075345 AK312607 AF390106 AF030428 AJ225022 AB127958	-118949	+	NM_012231 NM_015866 U17838	2011	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	46547	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	46585	+	BC014468|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001135610|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001006624|PDPN|10630|podoplanin##NM_001006625|PDPN|10630|podoplanin##NM_006474|PDPN|10630|podoplanin##NM_198389|PDPN|10630|podoplanin##BC014668|PDPN|10630|podoplanin##BC022812|PDPN|10630|podoplanin##AY194238|PDPN|10630|podoplanin##AK075327|PDPN|10630|podoplanin##AK075345|PDPN|10630|podoplanin##AK312607|PDPN|10630|podoplanin##AF390106|PDPN|10630|podoplanin##AF030428|PDPN|10630|podoplanin##AJ225022|PDPN|10630|podoplanin##AB127958|PDPN|10630|podoplanin##NM_012231|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_015866|PRDM2|7799|PR domain containing 2, with ZNF domain##U17838|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain	0.149118	0.0	
chr2	189843616	189843722	reg1004036.p2	4.706	+	TSC_hg19_v1_chr2_+_189839133 AB384877 X07240	-4496	+	X14420 BX649097 TSC_hg19_v1_chr2_+_189839117	-4551	+	TSC_hg19_v1_chr2_+_189839098 AK308010 NM_000090 BC028178	-4575	+	AB384824 J04478 Y14690 AB209045 BC086874 AK297936 TSC_hg19_v1_chr2_-_190044488 AK300146 M31365 NM_000393	200798	-	BC040567 NM_032168 TSC_hg19_v1_chr2_+_190306177	462501	+	TSC_hg19_v1_chr2_+_190306204 AK022607 AK290445 CR749440 AK022581 AK091546 AX747050	462540	+	X07240|COL3A1|1281|collagen, type III, alpha 1##X14420|COL3A1|1281|collagen, type III, alpha 1##AK308010|COL3A1|1281|collagen, type III, alpha 1##NM_000090|COL3A1|1281|collagen, type III, alpha 1##BC028178|COL3A1|1281|collagen, type III, alpha 1##J04478|COL5A2|1290|collagen, type V, alpha 2##Y14690|COL5A2|1290|collagen, type V, alpha 2##AB209045|COL5A2|1290|collagen, type V, alpha 2##BC086874|COL5A2|1290|collagen, type V, alpha 2##AK297936|COL5A2|1290|collagen, type V, alpha 2##AK300146|COL5A2|1290|collagen, type V, alpha 2##M31365|COL5A2|1290|collagen, type V, alpha 2##NM_000393|COL5A2|1290|collagen, type V, alpha 2##BC040567|WDR75|84128|WD repeat domain 75##NM_032168|WDR75|84128|WD repeat domain 75##AK022607|WDR75|84128|WD repeat domain 75##AK290445|WDR75|84128|WD repeat domain 75##CR749440|WDR75|84128|WD repeat domain 75##AK022581|WDR75|84128|WD repeat domain 75##AK091546|WDR75|84128|WD repeat domain 75	0.0	0.0	
chr22	18539240	18539339	reg1012037.p1	4.706	+	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	-32028	-	TSC_hg19_v1_chr22_-_18484268 AK127487	-55061	-	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-281955	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	21399	+	TSC_hg19_v1_chr22_+_18560755 NM_001127649 BC016280 BC047320	21478	+	TSC_hg19_v1_chr22_+_18593455 AK056947 NM_001193414 NM_018943	54174	+	AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26##NM_001127649|PEX26|55670|peroxisomal biogenesis factor 26##BC016280|PEX26|55670|peroxisomal biogenesis factor 26##BC047320|PEX26|55670|peroxisomal biogenesis factor 26##AK056947|TUBA8|51807|tubulin, alpha 8##NM_001193414|TUBA8|51807|tubulin, alpha 8##NM_018943|TUBA8|51807|tubulin, alpha 8	0.0	0.0	
chr5	127211653	127211832	reg1007332.p2	4.706	+	NM_001127385 AB219832 BC071790	-223017	+	NM_001048252 AB219764	-227019	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-352548	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	207021	-	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	207617	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	207731	+	NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.997278	0.0	
chr5	7872063	7872211	reg1012859.p1	4.706	+	TSC_hg19_v1_chr5_+_7869306 BC062577	-2827	+	AF121214 BC109216 BC109217 NM_002454 NM_024010 TSC_hg19_v1_chr5_+_7869273 AK308442 AK311663 AF025794 BC054816 BC035977	-2878	+	TSC_hg19_v1_chr5_-_7869116 AK026927 AF161354 NM_024091	-3005	-	U52840 TSC_hg19_v1_chr5_-_9546188 AK307587 NM_003966	1674057	-	BC095521 NM_019599	1758325	-	TSC_hg19_v1_chr5_-_10249982 CU687696 BC063406	2377847	-	BC062577|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF121214|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109216|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC109217|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_002454|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##NM_024010|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK308442|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK311663|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AF025794|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC054816|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##BC035977|MTRR|4552|5-methyltetrahydrofolate-homocysteine methyltransferase reductase##AK026927|FASTKD3|79072|FAST kinase domains 3##AF161354|FASTKD3|79072|FAST kinase domains 3##NM_024091|FASTKD3|79072|FAST kinase domains 3##U52840|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##AK307587|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##NM_003966|SEMA5A|9037|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A##BC095521|TAS2R1|50834|taste receptor, type 2, member 1##NM_019599|TAS2R1|50834|taste receptor, type 2, member 1##BC063406|FAM173B|134145|family with sequence similarity 173, member B	0.02107	0.0	
chr8	65730461	65730541	reg1010692.p1	4.706	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	-19222	-	TSC_hg19_v1_chr8_+_65493611 AK091333	-236837	+	NM_152414 AK293979	-237643	+	TSC_hg19_v1_chr8_-_66546394 AK001373	815894	-	TSC_hg19_v1_chr8_-_66546404 AK304463	815905	-	TSC_hg19_v1_chr8_-_66546413 BC011607 BC018846 NM_018120	815931	-	BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1##BC011607|ARMC1|55156|armadillo repeat containing 1##BC018846|ARMC1|55156|armadillo repeat containing 1##NM_018120|ARMC1|55156|armadillo repeat containing 1	0.073838	0.0	
chr9	1977669	1977815	reg1012754.p2	4.706	+	AF130729 NM_181872	-927133	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-927372	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	-927398	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	37554	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	644065	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	644332	+	AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor	1.087746	0.0	
chr18	46477661	46477841	reg1009419.p2	4.705	+	AF010193 NM_001190821 NM_005904	-671	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-984	-	AK301535 NM_001190822	-2049	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	509300	-	TSC_hg19_v1_chr18_-_47013575 AB097012	535814	-	TSC_hg19_v1_chr18_-_47013599 BC093004	535848	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.991863	0.0	denovo_WM_7:-40:0.331	denovo_WM_7:-41:0.331	denovo_WM_7:-42:0.331
chr19	11569727	11569863	reg1012653.p1	4.705	+	TSC_hg19_v1_chr19_-_11565617 BC068222	-4167	-	BC080533 BC011875 TSC_hg19_v1_chr19_-_11564576	-5223	-	AB385574 AF144075 TSC_hg19_v1_chr19_+_11546995 BC013586	-22826	+	AY036909 L26405 D26158 BC014144 NM_001420 NM_032281 TSC_hg19_v1_chr19_-_11591862	21858	-	TSC_hg19_v1_chr19_-_11616637 HQ258023 AY072704 BC014187 AK314986 BC016816	46732	-	TSC_hg19_v1_chr19_-_11616689 AK131037 NM_138783	46926	-	BC080533|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC011875|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##AF144075|PRKCSH|5589|protein kinase C substrate 80K-H##BC013586|PRKCSH|5589|protein kinase C substrate 80K-H##AY036909|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##L26405|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##D26158|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC014144|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_001420|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_032281|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##HQ258023|ZNF653|115950|zinc finger protein 653##AY072704|ZNF653|115950|zinc finger protein 653##BC014187|ZNF653|115950|zinc finger protein 653##AK314986|ZNF653|115950|zinc finger protein 653##BC016816|ZNF653|115950|zinc finger protein 653##AK131037|ZNF653|115950|zinc finger protein 653##NM_138783|ZNF653|115950|zinc finger protein 653	0.990419	0.0	denovo_WM_7:-21:0.814
chr10	82864260	82864439	reg1013318.p1	4.704	+	AK123978 NM_001145719	-563775	+	AK123885 NM_207372	-566692	+	TSC_hg19_v1_chr10_+_82214076 BC002920	-650245	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	770733	+	DQ857894 NM_001165973	773093	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	3034908	+	AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##AK123885|SH2D4B|387694|SH2 domain containing 4B##NM_207372|SH2D4B|387694|SH2 domain containing 4B##BC002920|TSPAN14|81619|tetraspanin 14##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein	0.0	0.0	
chr18	52760683	52760831	reg1013268.p1	4.704	+	AF273051 TSC_hg19_v1_chr18_-_52626693 BC029508 NM_025214	-134070	-	AK058097 NM_001143829	-135479	-	TSC_hg19_v1_chr18_+_52495674 AF329499 NM_004163 BC027474 U57093	-265019	+	FR748222 NM_001243236	209025	-	M74718 FR748220 FR748221 AK300038 NM_001243234 NM_001243235	228245	-	FR748209 M74720 AB209741 TSC_hg19_v1_chr18_-_53068920 AK300636	308081	-	AF273051|CCDC68|80323|coiled-coil domain containing 68##BC029508|CCDC68|80323|coiled-coil domain containing 68##NM_025214|CCDC68|80323|coiled-coil domain containing 68##AK058097|CCDC68|80323|coiled-coil domain containing 68##NM_001143829|CCDC68|80323|coiled-coil domain containing 68##AF329499|RAB27B|5874|RAB27B, member RAS oncogene family##NM_004163|RAB27B|5874|RAB27B, member RAS oncogene family##BC027474|RAB27B|5874|RAB27B, member RAS oncogene family##U57093|RAB27B|5874|RAB27B, member RAS oncogene family##FR748222|TCF4|6925|transcription factor 4##NM_001243236|TCF4|6925|transcription factor 4##M74718|TCF4|6925|transcription factor 4##FR748220|TCF4|6925|transcription factor 4##FR748221|TCF4|6925|transcription factor 4##AK300038|TCF4|6925|transcription factor 4##NM_001243234|TCF4|6925|transcription factor 4##NM_001243235|TCF4|6925|transcription factor 4##FR748209|TCF4|6925|transcription factor 4##AB209741|TCF4|6925|transcription factor 4##AK300636|TCF4|6925|transcription factor 4	1.136202	0.0	denovo_WM_7:14:0.452	denovo_WM_7:15:0.401
chr4	27987218	27987370	reg1010760.p1	4.704	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-1124754	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-1401614	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-1495309	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	2734705	+	AB006757 TSC_hg19_v1_chr4_+_30722198	2734900	+	TSC_hg19_v1_chr4_+_30722465 AB006756	2735165	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.995101	0.0	denovo_WM_7:-5:0.290	denovo_WM_7:-6:0.445
chr7	128595028	128595150	reg1008135.p1	4.704	+	EU258898 NM_001098627 DQ995494 AY504946 DQ277634	-14281	+	DQ995493 AY693669 BC004139 BC004201 DQ277633 NM_032643	-16831	+	AK293654 AY693665 AY693668 NM_001098629 NM_001098630 NM_001242452 DQ995492 U51127 AK297083 AY504947 AY693666 AY693667 EU258896	-17053	+	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	99806	-	TSC_hg19_v1_chr7_-_128695168 BC009923	100059	-	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	100116	-	EU258898|IRF5|3663|interferon regulatory factor 5##NM_001098627|IRF5|3663|interferon regulatory factor 5##DQ995494|IRF5|3663|interferon regulatory factor 5##AY504946|IRF5|3663|interferon regulatory factor 5##DQ277634|IRF5|3663|interferon regulatory factor 5##AY693669|IRF5|3663|interferon regulatory factor 5##BC004139|IRF5|3663|interferon regulatory factor 5##BC004201|IRF5|3663|interferon regulatory factor 5##DQ277633|IRF5|3663|interferon regulatory factor 5##NM_032643|IRF5|3663|interferon regulatory factor 5##AK293654|IRF5|3663|interferon regulatory factor 5##AY693665|IRF5|3663|interferon regulatory factor 5##AY693668|IRF5|3663|interferon regulatory factor 5##NM_001098629|IRF5|3663|interferon regulatory factor 5##NM_001098630|IRF5|3663|interferon regulatory factor 5##NM_001242452|IRF5|3663|interferon regulatory factor 5##DQ995492|IRF5|3663|interferon regulatory factor 5##U51127|IRF5|3663|interferon regulatory factor 5##AK297083|IRF5|3663|interferon regulatory factor 5##AY504947|IRF5|3663|interferon regulatory factor 5##AY693666|IRF5|3663|interferon regulatory factor 5##AY693667|IRF5|3663|interferon regulatory factor 5##EU258896|IRF5|3663|interferon regulatory factor 5##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3	0.992842	0.0	denovo_WM_7:60:0.613
chr9	132175990	132176105	reg1006400.p3	4.704	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	-92752	+	TSC_hg19_v1_chr9_-_131940541 NM_203434	-235507	-	TSC_hg19_v1_chr9_-_131940534 BC064028	-235540	-	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	75307	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	75394	+	BC112353 AK093122 AX747938 NM_199350	206990	-	AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##NM_203434|IER5L|389792|immediate early response 5-like##BC064028|IER5L|389792|immediate early response 5-like##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190##BC112353|C9orf50|375759|chromosome 9 open reading frame 50##AK093122|C9orf50|375759|chromosome 9 open reading frame 50##NM_199350|C9orf50|375759|chromosome 9 open reading frame 50	0.0	0.0	
chr12	15148657	15148837	reg1000803.p1	4.703	+	NM_006205 DQ980604 D45399	-22781	+	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	-34199	-	CU688844 BC030218 AY358536 NM_152321 AK056677	-57286	-	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	225603	-	NM_002848 NM_030667 TSC_hg19_v1_chr12_+_15475264 AB209729	326513	+	AK289784 TSC_hg19_v1_chr12_+_15475476 BC035960 U20489 BC126201 BC126203 Z48541 CU690232	326804	+	NM_006205|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##DQ980604|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##D45399|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_002848|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##NM_030667|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AB209729|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##AK289784|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC035960|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U20489|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126201|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##BC126203|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##Z48541|PTPRO|5800|protein tyrosine phosphatase, receptor type, O	0.0	0.0	
chr18	46479447	46479627	reg1000358.p4	4.703	+	AF010193 NM_001190821 NM_005904	-2457	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-2770	-	AK301535 NM_001190822	-3835	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	507514	-	TSC_hg19_v1_chr18_-_47013575 AB097012	534028	-	TSC_hg19_v1_chr18_-_47013599 BC093004	534062	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.0	0.0	
chr20	52253577	52253734	reg1009318.p1	4.703	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-42856	-	AF041259 NM_006526	-54020	-	AK302570 NM_001193421	-451834	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	433407	-	AK315220 NM_003657	433648	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	536865	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.565332	0.0	denovo_WM_7:64:0.265	denovo_WM_7:65:0.217	denovo_WM_7:80:0.501
chr10	81982474	81982582	reg1009695.p2	4.702	+	TSC_hg19_v1_chr10_-_81965334 AK056107	-17146	-	AJ278463 AJ278464 AJ278465 AK000567 NM_001157 NM_145868 NM_145869 TSC_hg19_v1_chr10_-_81965329	-17199	-	TSC_hg19_v1_chr10_-_81965293 AK301047	-17226	-	DQ891073 DQ894256 D49357 X69078 AK290820 BC018359 TSC_hg19_v1_chr10_-_82049413 NM_000429	66777	-	BC019250 NM_138812 AK125908 AK292542	133976	-	AK093378 AX748088 NM_032372	134029	+	AK056107|ANXA11|311|annexin A11##AJ278463|ANXA11|311|annexin A11##AJ278464|ANXA11|311|annexin A11##AJ278465|ANXA11|311|annexin A11##AK000567|ANXA11|311|annexin A11##NM_001157|ANXA11|311|annexin A11##NM_145868|ANXA11|311|annexin A11##NM_145869|ANXA11|311|annexin A11##AK301047|ANXA11|311|annexin A11##DQ891073|MAT1A|4143|methionine adenosyltransferase I, alpha##DQ894256|MAT1A|4143|methionine adenosyltransferase I, alpha##D49357|MAT1A|4143|methionine adenosyltransferase I, alpha##X69078|MAT1A|4143|methionine adenosyltransferase I, alpha##AK290820|MAT1A|4143|methionine adenosyltransferase I, alpha##BC018359|MAT1A|4143|methionine adenosyltransferase I, alpha##NM_000429|MAT1A|4143|methionine adenosyltransferase I, alpha##BC019250|DYDC1|143241|DPY30 domain containing 1##NM_138812|DYDC1|143241|DPY30 domain containing 1##AK125908|DYDC1|143241|DPY30 domain containing 1##AK292542|DYDC1|143241|DPY30 domain containing 1##AK093378|DYDC2|84332|DPY30 domain containing 2##NM_032372|DYDC2|84332|DPY30 domain containing 2	0.0	0.992669	CTCF.p2:74:0.993
chr12	8147929	8148057	reg1009849.p1	4.702	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-59227	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-104225	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-122527	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	37497	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	70960	-	TSC_hg19_v1_chr12_-_8219032 U62027	71023	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.0	0.999711	CTCF.p2:10:1.000
chr2	109815890	109815998	reg1011389.p2	4.702	+	NM_001099289 DQ307286	-69881	+	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	-210197	-	TSC_hg19_v1_chr2_-_109605623 AK296936	-210325	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	555537	-	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	555781	-	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	556001	+	NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##AK296936|EDAR|10913|ectodysplasin A receptor##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57	0.0	0.0	
chr2	165573623	165573758	reg1011878.p1	4.702	+	TSC_hg19_v1_chr2_-_165551183 AK001813 AK002057	-22427	-	L76687 NM_004490	-95332	-	TSC_hg19_v1_chr2_-_165477987 AK307744 AK313153	-95697	-	TSC_hg19_v1_chr2_-_165697908 AB023194	124196	-	BC071588 NM_014900 TSC_hg19_v1_chr2_-_165697936	124247	-	TSC_hg19_v1_chr2_-_165698334 AK002054	124637	-	AK001813|COBLL1|22837|COBL-like 1##AK002057|COBLL1|22837|COBL-like 1##L76687|GRB14|2888|growth factor receptor-bound protein 14##NM_004490|GRB14|2888|growth factor receptor-bound protein 14##AK307744|GRB14|2888|growth factor receptor-bound protein 14##AK313153|GRB14|2888|growth factor receptor-bound protein 14##AB023194|COBLL1|22837|COBL-like 1##BC071588|COBLL1|22837|COBL-like 1##NM_014900|COBLL1|22837|COBL-like 1##AK002054|COBLL1|22837|COBL-like 1	0.14547	0.026983	
chr2	61495573	61495680	reg1010599.p2	4.702	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-90837	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-90984	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-91043	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	202231	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	202317	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	269132	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	1.997022	0.0	denovo_WM_7:-28:0.232	denovo_WM_7:-29:0.671	denovo_WM_7:-44:0.683	denovo_WM_7:-45:0.209
chrX	109564928	109565073	reg1010276.p1	4.702	+	TSC_hg19_v1_chrX_-_109561428 AJ007014	-3554	-	TSC_hg19_v1_chrX_-_109561314 BX648797 NM_001025580 NM_015365	-3654	-	CU687440 TSC_hg19_v1_chrX_-_109561311 AK314596 BC060813	-3695	-	AB037739 AY121804 NM_020769	97284	+	AK091430 NM_001171689	118458	-	BC002909 AK293106 AK297563 AK312270 NM_145234	474033	-	AJ007014|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BX648797|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_001025580|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_015365|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##AK314596|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BC060813|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##AB037739|RGAG1|57529|retrotransposon gag domain containing 1##AY121804|RGAG1|57529|retrotransposon gag domain containing 1##NM_020769|RGAG1|57529|retrotransposon gag domain containing 1##AK091430|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_001171689|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BC002909|CHRDL1|91851|chordin-like 1##AK293106|CHRDL1|91851|chordin-like 1##AK297563|CHRDL1|91851|chordin-like 1##AK312270|CHRDL1|91851|chordin-like 1##NM_145234|CHRDL1|91851|chordin-like 1	0.0	0.0	
chr15	85567990	85568150	reg1002981.p2	4.701	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-42744	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-42833	+	TSC_hg19_v1_chr15_+_85523735 BC060762 AK074280 NM_001243137	-44368	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	98248	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	355821	+	AF127481 NM_144767	652197	+	BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##BC060762|PDE8A|5151|phosphodiesterase 8A##AK074280|PDE8A|5151|phosphodiesterase 8A##NM_001243137|PDE8A|5151|phosphodiesterase 8A##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13	0.0	0.0	
chr19	45555222	45555345	reg1012901.p1	4.701	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	-12960	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-50541	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-96629	+	BC019352 NM_145288	24404	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	27230	+	TSC_hg19_v1_chr19_+_45596205 BC035704	40932	+	AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37	0.967807	0.0	denovo_WM_7:-50:0.837
chr14	66976475	66976655	reg1012627.p1	4.700	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-1340	+	TSC_hg19_v1_chr14_+_66974870 AK315569	-1696	+	TSC_hg19_v1_chr14_+_66974859 AK025169	-1712	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	679578	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	731598	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	850001	-	AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	0.448043	0.0	
chr16	15497444	15497558	reg1005553.p1	4.700	+	TSC_hg19_v1_chr16_+_15489637 AK096918 AK293380 BC061514	-7851	+	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	-7900	+	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	-309373	-	AK057180 NM_033201 TSC_hg19_v1_chr16_+_15528363 AK293431 BC008967	30899	+	BC023603 NM_001142469	98621	+	BC137165 BC137170 BC144514 BC144515 TSC_hg19_v1_chr16_-_15737004 AK302667 AK095840 BC064914 NM_001184998 NM_001184999 NM_014647	239492	-	AK096918|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK293380|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC061514|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK057180|C16orf45|89927|chromosome 16 open reading frame 45##NM_033201|C16orf45|89927|chromosome 16 open reading frame 45##AK293431|C16orf45|89927|chromosome 16 open reading frame 45##BC008967|C16orf45|89927|chromosome 16 open reading frame 45##BC023603|C16orf45|89927|chromosome 16 open reading frame 45##NM_001142469|C16orf45|89927|chromosome 16 open reading frame 45##BC137165|KIAA0430|9665|KIAA0430##BC137170|KIAA0430|9665|KIAA0430##BC144514|KIAA0430|9665|KIAA0430##BC144515|KIAA0430|9665|KIAA0430##AK302667|KIAA0430|9665|KIAA0430##AK095840|KIAA0430|9665|KIAA0430##BC064914|KIAA0430|9665|KIAA0430##NM_001184998|KIAA0430|9665|KIAA0430##NM_001184999|KIAA0430|9665|KIAA0430##NM_014647|KIAA0430|9665|KIAA0430	0.997284	0.0	denovo_WM_7:35:0.816
chr2	242071991	242072074	reg1009371.p1	4.700	+	TSC_hg19_v1_chr2_-_242041703 BC053533 AK093695 AK291665 AK294192 BX648184 AK131298 AF161359 AK296515 NM_182501	-30306	-	NM_001080437	-133778	+	AK056601 NM_001085437	-236460	-	TSC_hg19_v1_chr2_-_242088865 D50925 AF387103 BC063585 AK056516 AK302417 BC050565 AK302561 NM_001252119 NM_001252122 NM_001252124 NM_015148	16839	-	AK308015 BC051689 TSC_hg19_v1_chr2_+_242089094	17026	+	CR749231 NM_001252120	17361	-	BC053533|MTERFD2|130916|MTERF domain containing 2##AK093695|MTERFD2|130916|MTERF domain containing 2##AK291665|MTERFD2|130916|MTERF domain containing 2##AK294192|MTERFD2|130916|MTERF domain containing 2##BX648184|MTERFD2|130916|MTERF domain containing 2##AK131298|MTERFD2|130916|MTERF domain containing 2##AF161359|MTERFD2|130916|MTERF domain containing 2##AK296515|MTERFD2|130916|MTERF domain containing 2##NM_182501|MTERFD2|130916|MTERF domain containing 2##NM_001080437|SNED1|25992|sushi, nidogen and EGF-like domains 1##AK056601|C2orf54|79919|chromosome 2 open reading frame 54##NM_001085437|C2orf54|79919|chromosome 2 open reading frame 54##D50925|PASK|23178|PAS domain containing serine/threonine kinase##AF387103|PASK|23178|PAS domain containing serine/threonine kinase##BC063585|PASK|23178|PAS domain containing serine/threonine kinase##AK056516|PASK|23178|PAS domain containing serine/threonine kinase##AK302417|PASK|23178|PAS domain containing serine/threonine kinase##BC050565|PASK|23178|PAS domain containing serine/threonine kinase##AK302561|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252119|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252122|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252124|PASK|23178|PAS domain containing serine/threonine kinase##NM_015148|PASK|23178|PAS domain containing serine/threonine kinase##AK308015|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC051689|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##CR749231|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252120|PASK|23178|PAS domain containing serine/threonine kinase	1.996731	0.0	denovo_WM_7:-65:0.928	denovo_WM_7:-80:0.293	denovo_WM_7:-81:0.305	denovo_WM_7:-82:0.316
chr3	129000672	129000825	reg1011125.p1	4.700	+	TSC_hg19_v1_chr3_+_128997745 BC010125 BC050686 NM_001006109 BC009993	-2936	+	TSC_hg19_v1_chr3_+_128997674 AF201934 NM_020187 BC088363 AK297501 AK309891 AK225264	-3086	+	TSC_hg19_v1_chr3_+_128968474 AK001724 AK123939 AK309821 AF100756 BC066650 AB047846 AB527280	-32237	+	TSC_hg19_v1_chr3_-_129035130 BC000426 NM_006026	34352	-	TSC_hg19_v1_chr3_-_129118263 BC053996 AK093477	117515	-	CU688234 AK127968 BC031104 BC066975 NM_207307	146664	-	BC010125|C3orf37|56941|chromosome 3 open reading frame 37##BC050686|C3orf37|56941|chromosome 3 open reading frame 37##NM_001006109|C3orf37|56941|chromosome 3 open reading frame 37##BC009993|C3orf37|56941|chromosome 3 open reading frame 37##AF201934|C3orf37|56941|chromosome 3 open reading frame 37##NM_020187|C3orf37|56941|chromosome 3 open reading frame 37##BC088363|C3orf37|56941|chromosome 3 open reading frame 37##AK297501|C3orf37|56941|chromosome 3 open reading frame 37##AK309891|C3orf37|56941|chromosome 3 open reading frame 37##AK225264|C3orf37|56941|chromosome 3 open reading frame 37##AK001724|COPG|22820|coatomer protein complex, subunit gamma##AK123939|COPG|22820|coatomer protein complex, subunit gamma##AK309821|COPG|22820|coatomer protein complex, subunit gamma##AF100756|COPG|22820|coatomer protein complex, subunit gamma##BC066650|COPG|22820|coatomer protein complex, subunit gamma##AB047846|COPG|22820|coatomer protein complex, subunit gamma##BC000426|H1FX|8971|H1 histone family, member X##NM_006026|H1FX|8971|H1 histone family, member X##BC053996|RPL32P3|132241|ribosomal protein L32 pseudogene 3##AK093477|RPL32P3|132241|ribosomal protein L32 pseudogene 3##AK127968|C3orf25|90288|chromosome 3 open reading frame 25##BC031104|C3orf25|90288|chromosome 3 open reading frame 25##BC066975|C3orf25|90288|chromosome 3 open reading frame 25##NM_207307|C3orf25|90288|chromosome 3 open reading frame 25	1.963084	0.0	denovo_WM_7:-57:0.738
chr11	100851096	100851242	reg1011782.p1	4.699	+	TSC_hg19_v1_chr11_+_100557961 NM_152432	-293041	+	AB013802 AB013803 NM_175566	-1424296	+	TSC_hg19_v1_chr11_+_98891687 AK308788 NM_001243270 NM_001243271 NM_014361 BC039255 BC144186	-1959420	+	AK314174 AF247167 NM_032021	11595	+	NM_001202474 AY382152 AB084248 AB085683 AB085843 AB085844 AB085845 AB587507	148630	-	AK304853 TSC_hg19_v1_chr11_-_101000531 NM_000926	149334	-	NM_152432|ARHGAP42|143872|Rho GTPase activating protein 42##AB013802|CNTN5|53942|contactin 5##AB013803|CNTN5|53942|contactin 5##NM_175566|CNTN5|53942|contactin 5##AK308788|CNTN5|53942|contactin 5##NM_001243270|CNTN5|53942|contactin 5##NM_001243271|CNTN5|53942|contactin 5##NM_014361|CNTN5|53942|contactin 5##BC039255|CNTN5|53942|contactin 5##BC144186|CNTN5|53942|contactin 5##AK314174|TMEM133|83935|transmembrane protein 133##AF247167|TMEM133|83935|transmembrane protein 133##NM_032021|TMEM133|83935|transmembrane protein 133##NM_001202474|PGR|5241|progesterone receptor##AY382152|PGR|5241|progesterone receptor##AB084248|PGR|5241|progesterone receptor##AB085683|PGR|5241|progesterone receptor##AB085843|PGR|5241|progesterone receptor##AB085844|PGR|5241|progesterone receptor##AB085845|PGR|5241|progesterone receptor##AK304853|PGR|5241|progesterone receptor##NM_000926|PGR|5241|progesterone receptor	0.0	0.220016	CTCF.p2:-70:0.220
chr14	77499724	77499831	reg1006416.p2	4.699	+	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-4717	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-5093	-	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-206982	+	AK124327 TSC_hg19_v1_chr14_-_77542533	42756	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	64868	+	BC117676 TSC_hg19_v1_chr14_-_77608072	108238	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.998791	0.0	
chr17	56734785	56734945	reg1010379.p2	4.699	+	AK097440 BC022189 NM_001038704	-113158	-	AK301914 AK302146 NM_001198713	-116687	-	BC018056 U88870 AK295527 AK315396 TSC_hg19_v1_chr17_-_56609427 AF176379 AK308957 NM_080415 NM_080416	-125447	-	AK308299 BC040526 AK125896 BC045647 AL834143 NM_001201457 NM_031272 NM_198393	34530	-	TSC_hg19_v1_chr17_+_56769933 BC107753	35070	+	TSC_hg19_v1_chr17_+_56769962 AF029669 AK290487 BC073161 NM_002876 NM_058216 BC064578 BC093930 BC101485 BC143259 BC000667 AF029670 AB528656 BT007339 AK129738 AK303363	35136	+	AK097440|C17orf47|284083|chromosome 17 open reading frame 47##BC022189|C17orf47|284083|chromosome 17 open reading frame 47##NM_001038704|C17orf47|284083|chromosome 17 open reading frame 47##AK301914|SEPT4|5414|septin 4##AK302146|SEPT4|5414|septin 4##NM_001198713|SEPT4|5414|septin 4##BC018056|SEPT4|5414|septin 4##U88870|SEPT4|5414|septin 4##AK295527|SEPT4|5414|septin 4##AK315396|SEPT4|5414|septin 4##AF176379|SEPT4|5414|septin 4##AK308957|SEPT4|5414|septin 4##NM_080415|SEPT4|5414|septin 4##NM_080416|SEPT4|5414|septin 4##AK308299|TEX14|56155|testis expressed 14##BC040526|TEX14|56155|testis expressed 14##AK125896|TEX14|56155|testis expressed 14##BC045647|TEX14|56155|testis expressed 14##AL834143|TEX14|56155|testis expressed 14##NM_001201457|TEX14|56155|testis expressed 14##NM_031272|TEX14|56155|testis expressed 14##NM_198393|TEX14|56155|testis expressed 14##BC107753|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF029669|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK290487|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC073161|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_002876|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##NM_058216|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC093930|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC101485|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC143259|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BC000667|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AF029670|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##BT007339|RAD51C|5889|RAD51 homolog C (S. cerevisiae)##AK303363|RAD51C|5889|RAD51 homolog C (S. cerevisiae)	1.991239	0.0	denovo_WM_7:5:0.270	denovo_WM_7:6:0.727	denovo_WM_7:21:0.860
chr2	40715288	40715414	reg1011387.p1	4.699	+	Y13032 BX648299 TSC_hg19_v1_chr2_-_40679231	-36129	-	AF108388 AF108389 M96368 AF128524 NM_001112800 NM_001112801 NM_001252624 NM_021097	-57920	-	TSC_hg19_v1_chr2_-_40006408 NM_025264	-708937	-	Y12878 Y12885 AK291696 BX537482 NM_001112802	24221	-	AK124893 NM_001242815	1465591	-	TSC_hg19_v1_chr2_+_42275160 NM_138370	1559781	+	Y13032|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX648299|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108388|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF108389|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##M96368|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AF128524|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112800|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112801|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001252624|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_021097|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_025264|THUMPD2|80745|THUMP domain containing 2##Y12878|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##Y12885|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK291696|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##BX537482|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##NM_001112802|SLC8A1|6546|solute carrier family 8 (sodium/calcium exchanger), member 1##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)	0.99927	0.0	denovo_WM_7:21:0.230	denovo_WM_7:22:0.594
chr1	161708784	161708939	reg1000467.p2	4.698	+	AY670683 AY670684 AY670685 AY670686 AY670687 NM_001002901 AY786314	-16406	+	AF531423 NM_001184866 NM_001184867 NM_001184870 NM_001184871 NM_001184872 NM_001184873 NM_032738	-32100	+	NM_001002273 NM_001002274 NM_001002275 NM_001190828 NM_004001 AF543826 M31933 X17653 AK308150 AB209585 BC062629 X52473 X62573 BC146678 M28696 M31934 BC031992 BC141826 U90941 AB590317 BC148273 CR407635 CU689254 DQ891344 DQ894525 U87560 U87561 U87562 U87563 U87564 U87565 U87566 U87567 U87568 U87569 U87570 U87571 U87572 U87573 U87574 U87575 U87576 U87577 M31935	-75869	+	TSC_hg19_v1_chr1_+_161719575 BC006286 AF119226 NM_007240 DQ892766 DQ896011 CU675333 BT006633	10705	+	NM_007348 TSC_hg19_v1_chr1_+_161736080 AB015856	27209	+	AF005887 AK290498 TSC_hg19_v1_chr1_+_161736109	27249	+	AY670683|FCRLB|127943|Fc receptor-like B##AY670684|FCRLB|127943|Fc receptor-like B##AY670685|FCRLB|127943|Fc receptor-like B##AY670686|FCRLB|127943|Fc receptor-like B##AY670687|FCRLB|127943|Fc receptor-like B##NM_001002901|FCRLB|127943|Fc receptor-like B##AY786314|FCRLB|127943|Fc receptor-like B##AF531423|FCRLA|84824|Fc receptor-like A##NM_001184866|FCRLA|84824|Fc receptor-like A##NM_001184867|FCRLA|84824|Fc receptor-like A##NM_001184870|FCRLA|84824|Fc receptor-like A##NM_001184871|FCRLA|84824|Fc receptor-like A##NM_001184872|FCRLA|84824|Fc receptor-like A##NM_001184873|FCRLA|84824|Fc receptor-like A##NM_032738|FCRLA|84824|Fc receptor-like A##NM_001002273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002274|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002275|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001190828|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_004001|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AF543826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31933|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X17653|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AK308150|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AB209585|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X52473|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X62573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC146678|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M28696|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31934|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC031992|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC141826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U90941|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##BC148273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##CR407635|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##DQ891344|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##DQ894525|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87560|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87561|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87562|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87563|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87564|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87565|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87566|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87567|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87568|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87569|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87570|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87571|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87572|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87574|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87575|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87576|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87577|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31935|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC006286|DUSP12|11266|dual specificity phosphatase 12##AF119226|DUSP12|11266|dual specificity phosphatase 12##NM_007240|DUSP12|11266|dual specificity phosphatase 12##DQ892766|DUSP12|11266|dual specificity phosphatase 12##DQ896011|DUSP12|11266|dual specificity phosphatase 12##BT006633|DUSP12|11266|dual specificity phosphatase 12##NM_007348|ATF6|22926|activating transcription factor 6##AB015856|ATF6|22926|activating transcription factor 6##AF005887|ATF6|22926|activating transcription factor 6##AK290498|ATF6|22926|activating transcription factor 6	0.0	0.0	
chr14	93626483	93626581	reg1009845.p1	4.698	+	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	-44318	-	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	-44941	-	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-236935	+	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	24668	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	24713	-	AK315522 TSC_hg19_v1_chr14_-_93651261	24736	-	BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##AK315522|MOAP1|64112|modulator of apoptosis 1	0.980193	0.0	denovo_WM_7:-11:0.778
chr4	119959460	119959606	reg1014297.p1	4.697	+	TSC_hg19_v1_chr4_+_119948562 AK296962	-10971	+	AJ010482 TSC_hg19_v1_chr4_+_119948327	-11209	+	FN422000 TSC_hg19_v1_chr4_+_119948273	-11260	+	NM_016599 AJ252149 AK313856 AY013295 BC017402 BC020932 BC005195	97469	+	TSC_hg19_v1_chr4_+_120133742 BX648836	174210	+	TSC_hg19_v1_chr4_+_120133867 BC062741 NM_019050 CR749490	174307	+	AK296962|SYNPO2|171024|synaptopodin 2##AJ010482|SYNPO2|171024|synaptopodin 2##FN422000|SYNPO2|171024|synaptopodin 2##NM_016599|MYOZ2|51778|myozenin 2##AJ252149|MYOZ2|51778|myozenin 2##AK313856|MYOZ2|51778|myozenin 2##AY013295|MYOZ2|51778|myozenin 2##BC017402|MYOZ2|51778|myozenin 2##BC020932|MYOZ2|51778|myozenin 2##BC005195|MYOZ2|51778|myozenin 2##BC062741|USP53|54532|ubiquitin specific peptidase 53##NM_019050|USP53|54532|ubiquitin specific peptidase 53##CR749490|USP53|54532|ubiquitin specific peptidase 53	0.931501	0.0	denovo_WM_7:0:0.297	denovo_WM_7:-1:0.259
chr4	33186207	33186387	reg1010761.p1	4.697	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-2463838	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-2464103	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-2464298	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	3059740	-	AK131492 NM_001136536 AK304357 AK316523	3096949	+	BC157885 NM_001170700	3099346	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.999092	0.0	denovo_WM_7:5:0.847
chr8	119964106	119964283	reg1010557.p1	4.697	+	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	-329987	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	-330069	-	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-840233	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	26	-	AK291791 NM_006438 BC103815 BC103816 AY359038 AB002631	115275	+	TSC_hg19_v1_chr8_+_120220616 BC012367 NM_052886 AY007723 AK172820 AK312030 DQ890584 DQ893743	256445	+	NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK291791|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##NM_006438|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103815|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103816|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AY359038|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AB002631|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC012367|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_052886|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AY007723|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK172820|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK312030|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ890584|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ893743|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)	0.0	0.0	
chr9	117691614	117691728	reg1011659.p2	4.697	+	AB590753 AK291642 BC074940 BC074941 BC069435 AK313721 BC104462 BC104463 NM_005118 AF520785	-123320	-	AY434464 NM_001204344	-136862	-	NM_001199233	-247303	-	AK313619 NM_001244 NM_001252290	1203	-	AB210038 TSC_hg19_v1_chr9_-_117880433 AK304015 X78565 NM_002160	188802	-	AB022761 NM_017418	212425	+	AK291642|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC074940|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC074941|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC069435|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AK313721|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC104462|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC104463|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_005118|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AF520785|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AY434464|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001204344|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001199233|LOC100505478|100505478|uncharacterized LOC100505478##AK313619|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_001244|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_001252290|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##AB210038|TNC|3371|tenascin C##AK304015|TNC|3371|tenascin C##X78565|TNC|3371|tenascin C##NM_002160|TNC|3371|tenascin C##AB022761|DEC1|50514|deleted in esophageal cancer 1##NM_017418|DEC1|50514|deleted in esophageal cancer 1	0.995766	0.0	denovo_WM_7:-24:0.448	denovo_WM_7:-25:0.448
chr12	14515364	14515544	reg1008259.p1	4.696	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-382468	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-1165725	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-1165737	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	3181	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	22818	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	205155	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.0	0.0	
chr2	70296278	70296435	reg1006581.p2	4.696	+	AK055994 NM_152792	-106960	-	TSC_hg19_v1_chr2_+_70142307 L06895 BC113531 BC117260 BC143831 BC143832 BC144601 BC069377 BC069433 AB463858 CR536495 CR541692 CU686788 HQ258749	-153974	+	TSC_hg19_v1_chr2_+_70142240 AK301088 AK312734	-154106	+	TSC_hg19_v1_chr2_-_70313405 AK056822	17052	-	TSC_hg19_v1_chr2_-_70314146 BC040598	17757	-	TSC_hg19_v1_chr2_+_70314613 NM_006196	18238	+	AK055994|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_152792|ASPRV1|151516|aspartic peptidase, retroviral-like 1##L06895|MXD1|4084|MAX dimerization protein 1##BC113531|MXD1|4084|MAX dimerization protein 1##BC117260|MXD1|4084|MAX dimerization protein 1##BC143831|MXD1|4084|MAX dimerization protein 1##BC143832|MXD1|4084|MAX dimerization protein 1##BC144601|MXD1|4084|MAX dimerization protein 1##BC069377|MXD1|4084|MAX dimerization protein 1##BC069433|MXD1|4084|MAX dimerization protein 1##CR536495|MXD1|4084|MAX dimerization protein 1##CR541692|MXD1|4084|MAX dimerization protein 1##HQ258749|MXD1|4084|MAX dimerization protein 1##AK301088|MXD1|4084|MAX dimerization protein 1##AK312734|MXD1|4084|MAX dimerization protein 1##AK056822|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##BC040598|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##NM_006196|PCBP1|5093|poly(rC) binding protein 1	0.0	0.0	
chr3	187637019	187637147	reg1012347.p1	4.696	+	U00115 NM_001706	-173590	-	BC142705 BC150184 Z21943 AK304325 AK308162 TSC_hg19_v1_chr3_-_187463257 BC146796	-173839	-	S67779 NM_001130845	-182818	-	AL833171 TSC_hg19_v1_chr3_+_187870843	233744	+	TSC_hg19_v1_chr3_+_187871663 NM_001167672 AK304035	234552	+	TSC_hg19_v1_chr3_-_187871925 BC042414	234787	-	U00115|BCL6|604|B-cell CLL/lymphoma 6##NM_001706|BCL6|604|B-cell CLL/lymphoma 6##BC142705|BCL6|604|B-cell CLL/lymphoma 6##BC150184|BCL6|604|B-cell CLL/lymphoma 6##Z21943|BCL6|604|B-cell CLL/lymphoma 6##AK304325|BCL6|604|B-cell CLL/lymphoma 6##AK308162|BCL6|604|B-cell CLL/lymphoma 6##BC146796|BCL6|604|B-cell CLL/lymphoma 6##S67779|BCL6|604|B-cell CLL/lymphoma 6##NM_001130845|BCL6|604|B-cell CLL/lymphoma 6##AL833171|LPP|4026|LIM domain containing preferred translocation partner in lipoma##NM_001167672|LPP|4026|LIM domain containing preferred translocation partner in lipoma##AK304035|LPP|4026|LIM domain containing preferred translocation partner in lipoma##BC042414|LPP-AS2|339929|LPP antisense RNA 2 (non-protein coding)	0.874924	0.0	denovo_WM_7:-5:0.470	denovo_WM_7:-6:0.377
chr1	41160284	41160380	reg1009327.p1	4.695	+	TSC_hg19_v1_chr1_-_41157737 AK094323	-2609	-	TSC_hg19_v1_chr1_+_41157659 NM_001142590 AK127677	-2665	+	TSC_hg19_v1_chr1_+_41157505 D89986 U78774	-2824	+	AF191744 AB385526 BT020081 U62296 TSC_hg19_v1_chr1_+_41204591	44218	+	TSC_hg19_v1_chr1_+_41249485 AF105202 NM_004700 NM_172163	89249	+	TSC_hg19_v1_chr1_+_41284599 AK074957	124285	+	AK094323|LOC100130557|100130557|uncharacterized LOC100130557##NM_001142590|NFYC|4802|nuclear transcription factor Y, gamma##AK127677|NFYC|4802|nuclear transcription factor Y, gamma##D89986|NFYC|4802|nuclear transcription factor Y, gamma##U78774|NFYC|4802|nuclear transcription factor Y, gamma##AF191744|NFYC|4802|nuclear transcription factor Y, gamma##BT020081|NFYC|4802|nuclear transcription factor Y, gamma##U62296|NFYC|4802|nuclear transcription factor Y, gamma##AF105202|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##NM_004700|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##NM_172163|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4##AK074957|KCNQ4|9132|potassium voltage-gated channel, KQT-like subfamily, member 4	0.0	0.0	
chr15	38592676	38592789	reg1011957.p1	4.695	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	-47710	+	TSC_hg19_v1_chr15_+_38544515 AK091222 AX746859 BC137480 BC137481	-48337	+	BC029221 NM_152453	-365276	+	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	153613	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	264199	-	AK093014 AX747856 BC119016 BC119810 NM_207444	396066	+	NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AK091222|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137480|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137481|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC029221|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_152453|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53	0.0	0.0	
chr17	1932295	1932361	reg1012201.p1	4.695	+	BC128608 NM_178568	-4151	-	TSC_hg19_v1_chr17_+_1733335 M63488 AB209732 BC018126 AB385027 HQ258560	-198979	+	TSC_hg19_v1_chr17_+_1733284 NM_002945 AK289704	-199044	+	TSC_hg19_v1_chr17_+_1933446 S81752 U34880 AF321876 NM_001383 AK314015 BC096086 BC096087 BC096088 BC096089 BC003099	1093	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	12980	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	26070	+	BC128608|RTN4RL1|146760|reticulon 4 receptor-like 1##NM_178568|RTN4RL1|146760|reticulon 4 receptor-like 1##M63488|RPA1|6117|replication protein A1, 70kDa##AB209732|RPA1|6117|replication protein A1, 70kDa##BC018126|RPA1|6117|replication protein A1, 70kDa##HQ258560|RPA1|6117|replication protein A1, 70kDa##NM_002945|RPA1|6117|replication protein A1, 70kDa##AK289704|RPA1|6117|replication protein A1, 70kDa##S81752|DPH1|1801|DPH1 homolog (S. cerevisiae)##U34880|DPH1|1801|DPH1 homolog (S. cerevisiae)##AF321876|DPH1|1801|DPH1 homolog (S. cerevisiae)##NM_001383|DPH1|1801|DPH1 homolog (S. cerevisiae)##AK314015|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096086|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096087|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096088|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096089|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC003099|DPH1|1801|DPH1 homolog (S. cerevisiae)##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1	0.0	0.0	
chr6	111730540	111730689	reg1009514.p1	4.695	+	TSC_hg19_v1_chr6_+_111580568 BC036115	-150042	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	-150091	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-321819	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	73534	-	BC035823 TSC_hg19_v1_chr6_-_111804371	73739	-	AF071798 NM_002912 TSC_hg19_v1_chr6_-_111804420 AF058701	73810	-	BC036115|KIAA1919|91749|KIAA1919##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##BC035823|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF071798|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##NM_002912|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF058701|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.997729	0.0	denovo_WM_7:-43:0.470	denovo_WM_7:-44:0.527
chr9	135249232	135249353	reg1008940.p1	4.695	+	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	-18885	-	TSC_hg19_v1_chr9_-_135230352 AK307608 BX537849	-18944	-	TSC_hg19_v1_chr9_-_135230312 AK125448	-19062	-	TSC_hg19_v1_chr9_-_135282210 BC050734 X83973 BC143821 BC127669 BC127670 BC143048 BC143049 BC062692 BC104639 AK225119 AK302902 NM_001205296 NM_007344	32909	-	AK128819 NM_207417 BC118593 BC124555	36320	+	TSC_hg19_v1_chr9_+_135457992 AK054797 NM_020064 BC136956 BC136969 BC144433 AF325688 AB463426 AF321618	208787	+	BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin##AK307608|SETX|23064|senataxin##BX537849|SETX|23064|senataxin##AK125448|SETX|23064|senataxin##BC050734|TTF1|7270|transcription termination factor, RNA polymerase I##BC143821|TTF1|7270|transcription termination factor, RNA polymerase I##BC127669|TTF1|7270|transcription termination factor, RNA polymerase I##BC127670|TTF1|7270|transcription termination factor, RNA polymerase I##BC143048|TTF1|7270|transcription termination factor, RNA polymerase I##BC143049|TTF1|7270|transcription termination factor, RNA polymerase I##BC062692|TTF1|7270|transcription termination factor, RNA polymerase I##BC104639|TTF1|7270|transcription termination factor, RNA polymerase I##AK225119|TTF1|7270|transcription termination factor, RNA polymerase I##AK302902|TTF1|7270|transcription termination factor, RNA polymerase I##NM_001205296|TTF1|7270|transcription termination factor, RNA polymerase I##NM_007344|TTF1|7270|transcription termination factor, RNA polymerase I##AK128819|C9orf171|389799|chromosome 9 open reading frame 171##NM_207417|C9orf171|389799|chromosome 9 open reading frame 171##BC118593|C9orf171|389799|chromosome 9 open reading frame 171##BC124555|C9orf171|389799|chromosome 9 open reading frame 171##AK054797|BARHL1|56751|BarH-like homeobox 1##NM_020064|BARHL1|56751|BarH-like homeobox 1##BC136956|BARHL1|56751|BarH-like homeobox 1##BC136969|BARHL1|56751|BarH-like homeobox 1##BC144433|BARHL1|56751|BarH-like homeobox 1##AF325688|BARHL1|56751|BarH-like homeobox 1##AF321618|BARHL1|56751|BarH-like homeobox 1	0.0	0.0	
chr17	62773922	62774102	reg1007814.p2	4.694	+	TSC_hg19_v1_chr17_-_62658414 CR936721 NM_022739	-115647	-	TSC_hg19_v1_chr17_-_62658187 AY014180	-115830	-	AF310676 AB385561 AF301463 BC051283 BC093876 BC111945 TSC_hg19_v1_chr17_-_62658136	-115945	-	BC032382 TSC_hg19_v1_chr17_-_62777683 AK055342 BC120976 BC120977	3710	-	TSC_hg19_v1_chr17_-_62833238 AK301174 AK304173	59221	-	TSC_hg19_v1_chr17_-_62833261 BC034693 BC041324	59242	-	CR936721|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##NM_022739|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##AY014180|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##AF310676|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##AF301463|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##BC051283|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##BC093876|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##BC111945|SMURF2|64750|SMAD specific E3 ubiquitin protein ligase 2##BC032382|LOC146880|146880|Rho GTPase activating protein 27 pseudogene##AK055342|LOC146880|146880|Rho GTPase activating protein 27 pseudogene##BC120976|LOC146880|146880|Rho GTPase activating protein 27 pseudogene##BC120977|LOC146880|146880|Rho GTPase activating protein 27 pseudogene##AK301174|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##AK304173|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene##BC034693|PLEKHM1P|440456|pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene	0.999148	0.0	
chr1	89149834	89150014	reg1003004.p2	4.694	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-1352509	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-1352599	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-1355243	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	171	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	207287	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	207349	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	0.0	0.0	
chr2	216545479	216545659	reg1011245.p1	4.694	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-244787	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-245049	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-255597	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	332767	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	400975	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	401123	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.158375	0.0	
chr19	39051415	39051493	reg1000707.p4	4.693	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-127110	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-134582	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-157553	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	57134	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	58259	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	58362	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	2.237379	0.0	denovo_WM_7:-48:0.416	denovo_WM_7:49:0.219
chr6	92819761	92819914	reg1011646.p1	4.693	+	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	-1522999	-	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	-1523154	-	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-1813225	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	1309346	-	TSC_hg19_v1_chr6_-_96025325 BC047582	3205452	-	TSC_hg19_v1_chr6_+_96025418 NM_024641 BX640869 AY048774 AY048775 BC146671 BC150199 CR936827 AK291940 BX537398	3205564	+	BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7##NM_024641|MANEA|79694|mannosidase, endo-alpha##BX640869|MANEA|79694|mannosidase, endo-alpha##AY048774|MANEA|79694|mannosidase, endo-alpha##AY048775|MANEA|79694|mannosidase, endo-alpha##BC146671|MANEA|79694|mannosidase, endo-alpha##BC150199|MANEA|79694|mannosidase, endo-alpha##CR936827|MANEA|79694|mannosidase, endo-alpha##AK291940|MANEA|79694|mannosidase, endo-alpha##BX537398|MANEA|79694|mannosidase, endo-alpha	0.0	0.0	
chr12	112429990	112430085	reg1011521.p1	4.692	+	NM_003668 NM_139078 BC047284	-149717	+	BC041049 TSC_hg19_v1_chr12_+_112280044	-149964	+	AK122767 TSC_hg19_v1_chr12_+_112280039	-150125	+	BC048796 BC070135 AK074648 TSC_hg19_v1_chr12_-_112450970 AL833501 BC000282 AK092832 AX747754 NM_001193453 NM_001193531 NM_138341	20931	-	NM_001034025 NM_006817 TSC_hg19_v1_chr12_+_112451212 BC101493 BC101495	21149	+	TSC_hg19_v1_chr12_+_112451229 AK309426	21193	+	NM_003668|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##NM_139078|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC047284|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC041049|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##AK122767|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC048796|TMEM116|89894|transmembrane protein 116##BC070135|TMEM116|89894|transmembrane protein 116##AK074648|TMEM116|89894|transmembrane protein 116##AL833501|TMEM116|89894|transmembrane protein 116##BC000282|TMEM116|89894|transmembrane protein 116##AK092832|LOC728543|728543|uncharacterized LOC728543##NM_001193453|TMEM116|89894|transmembrane protein 116##NM_001193531|TMEM116|89894|transmembrane protein 116##NM_138341|TMEM116|89894|transmembrane protein 116##NM_001034025|ERP29|10961|endoplasmic reticulum protein 29##NM_006817|ERP29|10961|endoplasmic reticulum protein 29##BC101493|ERP29|10961|endoplasmic reticulum protein 29##BC101495|ERP29|10961|endoplasmic reticulum protein 29	0.998957	0.0	denovo_WM_7:43:0.314	denovo_WM_7:44:0.314	denovo_WM_7:45:0.314
chr16	11863600	11863730	reg1007736.p3	4.692	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-27009	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-101367	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-182876	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	27386	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	27450	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	81739	-	AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1	2.019397	0.0	
chr18	56679013	56679193	reg1009277.p1	4.692	+	TSC_hg19_v1_chr18_+_56531281 BC036366	-147754	+	TSC_hg19_v1_chr18_+_56530714 AB046849	-148248	+	NM_018181 AF295077 BC130618 BC130620	-148984	+	TSC_hg19_v1_chr18_+_56807119 AK314107 AF212233 AK311213 NM_033280 AK295346 AK307127 BC009703 CU679449	128044	+	TSC_hg19_v1_chr18_+_56887389 AK307264 BC004488 NM_001012512 NM_001012513 NM_002091 K02054 DQ893451 DQ896223 AB528662 AB102889 BT006803	208340	+	BC051901 AF115392 NM_013435 AB593018	261551	-	BC036366|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##NM_018181|ZNF532|55205|zinc finger protein 532##AF295077|ZNF532|55205|zinc finger protein 532##BC130618|ZNF532|55205|zinc finger protein 532##BC130620|ZNF532|55205|zinc finger protein 532##AK314107|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AF212233|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##NM_033280|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK295346|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307127|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC009703|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307264|GRP|2922|gastrin-releasing peptide##BC004488|GRP|2922|gastrin-releasing peptide##NM_001012512|GRP|2922|gastrin-releasing peptide##NM_001012513|GRP|2922|gastrin-releasing peptide##NM_002091|GRP|2922|gastrin-releasing peptide##K02054|GRP|2922|gastrin-releasing peptide##DQ893451|GRP|2922|gastrin-releasing peptide##DQ896223|GRP|2922|gastrin-releasing peptide##AB102889|GRP|2922|gastrin-releasing peptide##BT006803|GRP|2922|gastrin-releasing peptide##BC051901|RAX|30062|retina and anterior neural fold homeobox##AF115392|RAX|30062|retina and anterior neural fold homeobox##NM_013435|RAX|30062|retina and anterior neural fold homeobox##AB593018|RAX|30062|retina and anterior neural fold homeobox	0.996997	0.0	denovo_WM_7:-25:0.313	denovo_WM_7:-26:0.313	denovo_WM_7:-27:0.313
chr4	22391147	22391326	reg1001589.p2	4.692	+	NM_147182 TSC_hg19_v1_chr4_-_21950396	-440852	-	BX648990 DQ148490 NM_001035003	-691919	-	DQ148491 NM_001035004	-844958	-	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	126318	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	303356	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1500417	-	NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	0.993315	0.011306	
chr4	95135928	95136058	reg1014736.p1	4.692	+	TSC_hg19_v1_chr4_+_95129015 NM_001128429 NM_020159 BC045534 AY008271 BC041800	-6879	+	TSC_hg19_v1_chr4_+_95128758 NM_001128430 AK027490 BC017953 AB032948	-7182	+	BC113623 BC113625 BC069145 AB464463 BC069594 BC069604 CU686920 EU446465 HQ258191 NM_005172 BC069578	-385932	+	TSC_hg19_v1_chr4_-_95263988 BC020734 AK290075 NM_014485	128013	-	TSC_hg19_v1_chr4_+_95373030 AY345240 NM_001011513 NM_001011515 NM_001011516 NM_006457	237029	+	TSC_hg19_v1_chr4_+_95373092 BC017902 BC008741 AK291898 AK291624 AK304125 AK296980 AL832157 AL832686 AF061258 AL833151 AL833438	237103	+	NM_001128429|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_020159|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC045534|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AY008271|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC041800|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_001128430|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AK027490|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC017953|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AB032948|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC113623|ATOH1|474|atonal homolog 1 (Drosophila)##BC113625|ATOH1|474|atonal homolog 1 (Drosophila)##BC069145|ATOH1|474|atonal homolog 1 (Drosophila)##BC069594|ATOH1|474|atonal homolog 1 (Drosophila)##BC069604|ATOH1|474|atonal homolog 1 (Drosophila)##EU446465|ATOH1|474|atonal homolog 1 (Drosophila)##HQ258191|ATOH1|474|atonal homolog 1 (Drosophila)##NM_005172|ATOH1|474|atonal homolog 1 (Drosophila)##BC069578|ATOH1|474|atonal homolog 1 (Drosophila)##BC020734|HPGDS|27306|hematopoietic prostaglandin D synthase##AK290075|HPGDS|27306|hematopoietic prostaglandin D synthase##NM_014485|HPGDS|27306|hematopoietic prostaglandin D synthase##AY345240|PDLIM5|10611|PDZ and LIM domain 5##NM_001011513|PDLIM5|10611|PDZ and LIM domain 5##NM_001011515|PDLIM5|10611|PDZ and LIM domain 5##NM_001011516|PDLIM5|10611|PDZ and LIM domain 5##NM_006457|PDLIM5|10611|PDZ and LIM domain 5##BC017902|PDLIM5|10611|PDZ and LIM domain 5##BC008741|PDLIM5|10611|PDZ and LIM domain 5##AK291898|PDLIM5|10611|PDZ and LIM domain 5##AK291624|PDLIM5|10611|PDZ and LIM domain 5##AK304125|PDLIM5|10611|PDZ and LIM domain 5##AK296980|PDLIM5|10611|PDZ and LIM domain 5##AL832157|PDLIM5|10611|PDZ and LIM domain 5##AL832686|PDLIM5|10611|PDZ and LIM domain 5##AF061258|PDLIM5|10611|PDZ and LIM domain 5##AL833151|PDLIM5|10611|PDZ and LIM domain 5##AL833438|PDLIM5|10611|PDZ and LIM domain 5	0.947224	0.0	denovo_WM_7:-30:0.486
chr17	2148157	2148292	reg1012134.p1	4.691	+	DQ187313 NM_001098202	-188667	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	-189826	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-202916	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	58588	-	AB385377 AY145883 TSC_hg19_v1_chr17_-_2207028 NM_017575	58816	-	TSC_hg19_v1_chr17_+_2207247 AY743706 AK223120 AK023169 NM_021947 BC057234	59028	+	DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY145883|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_017575|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY743706|SRR|63826|serine racemase##AK223120|SRR|63826|serine racemase##AK023169|SRR|63826|serine racemase##NM_021947|SRR|63826|serine racemase##BC057234|SRR|63826|serine racemase	0.0	0.774135	CTCF.p2:17:0.774
chr4	93952799	93952904	reg1012551.p1	4.691	+	AB209318 NM_001510 AK308611	-727259	+	BC051694 NM_207491	-2796670	+	AK097436 NM_001145065 AK310825 AB051467 BC021681	-2904133	+	BC113623 BC113625 BC069145 AB464463 BC069594 BC069604 CU686920 EU446465 HQ258191 NM_005172 BC069578	797210	+	TSC_hg19_v1_chr4_+_95128758 NM_001128430 AK027490 BC017953 AB032948	1175960	+	TSC_hg19_v1_chr4_+_95129015 NM_001128429 NM_020159 BC045534 AY008271 BC041800	1176263	+	AB209318|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001510|GRID2|2895|glutamate receptor, ionotropic, delta 2##AK308611|GRID2|2895|glutamate receptor, ionotropic, delta 2##BC051694|FAM190A|401145|family with sequence similarity 190, member A##NM_207491|FAM190A|401145|family with sequence similarity 190, member A##AK097436|FAM190A|401145|family with sequence similarity 190, member A##NM_001145065|FAM190A|401145|family with sequence similarity 190, member A##AK310825|FAM190A|401145|family with sequence similarity 190, member A##AB051467|FAM190A|401145|family with sequence similarity 190, member A##BC021681|FAM190A|401145|family with sequence similarity 190, member A##BC113623|ATOH1|474|atonal homolog 1 (Drosophila)##BC113625|ATOH1|474|atonal homolog 1 (Drosophila)##BC069145|ATOH1|474|atonal homolog 1 (Drosophila)##BC069594|ATOH1|474|atonal homolog 1 (Drosophila)##BC069604|ATOH1|474|atonal homolog 1 (Drosophila)##EU446465|ATOH1|474|atonal homolog 1 (Drosophila)##HQ258191|ATOH1|474|atonal homolog 1 (Drosophila)##NM_005172|ATOH1|474|atonal homolog 1 (Drosophila)##BC069578|ATOH1|474|atonal homolog 1 (Drosophila)##NM_001128430|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AK027490|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC017953|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AB032948|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_001128429|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_020159|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC045534|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AY008271|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC041800|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	0.990301	0.0	denovo_WM_7:51:0.814
chr8	25946375	25946555	reg1007340.p2	4.691	+	BC137106 BC137107 NM_022659 TSC_hg19_v1_chr8_-_25902675 AK001144	-43799	-	TSC_hg19_v1_chr8_+_25316748 AK299278 AL833627 BC015691 BC104450 BC104451	-629631	+	AK292505 TSC_hg19_v1_chr8_+_25316724	-629743	+	TSC_hg19_v1_chr8_+_26149035 NM_002717	202556	+	AK314823 TSC_hg19_v1_chr8_+_26149043 BC041071	202584	+	TSC_hg19_v1_chr8_+_26149092 M64929 AY189686	202729	+	BC137106|EBF2|64641|early B-cell factor 2##BC137107|EBF2|64641|early B-cell factor 2##NM_022659|EBF2|64641|early B-cell factor 2##AK001144|EBF2|64641|early B-cell factor 2##AK299278|CDCA2|157313|cell division cycle associated 2##AL833627|CDCA2|157313|cell division cycle associated 2##BC015691|CDCA2|157313|cell division cycle associated 2##BC104450|CDCA2|157313|cell division cycle associated 2##BC104451|CDCA2|157313|cell division cycle associated 2##AK292505|CDCA2|157313|cell division cycle associated 2##NM_002717|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AK314823|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC041071|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##M64929|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AY189686|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha	0.0	0.0	
chr12	118283957	118284086	reg1000690.p2	4.690	+	AK294435 AF446135 EU753241 U17327 AK307481 NM_000620 NM_001204218	-484513	-	AF446136 TSC_hg19_v1_chr12_-_117799037	-485000	-	NM_001204214	-536807	-	NM_173598	122006	-	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	170547	+	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	214914	-	AK294435|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446135|NOS1|4842|nitric oxide synthase 1 (neuronal)##EU753241|NOS1|4842|nitric oxide synthase 1 (neuronal)##U17327|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK307481|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_000620|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204218|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446136|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204214|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_173598|KSR2|283455|kinase suppressor of ras 2##NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2	0.99498	0.0	
chr12	122020353	122020533	reg1003284.p2	4.690	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-1529	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-2184	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-115369	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	44200	+	BC057760 NM_173855	87116	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	130301	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	0.0	0.0	
chr17	35968313	35968493	reg1003041.p2	4.690	+	TSC_hg19_v1_chr17_+_35849998 BC001894 AF038844 BC000370 BC004448	-118388	+	TSC_hg19_v1_chr17_+_35849996 AK314894	-118414	+	NM_007026 TSC_hg19_v1_chr17_+_35849956	-118443	+	TSC_hg19_v1_chr17_-_35969418 AB462949 BC117313 BC143452 BC143476 BC143478 BC084536 BC090930 AF169548 AK302821 NM_001163544 NM_001163545 NM_001163546 NM_001163547 NM_007247 NM_080550 NM_198882	1047	-	TSC_hg19_v1_chr17_-_36003446 BC006489 AB208938 CU692030	35038	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	35074	-	BC001894|DUSP14|11072|dual specificity phosphatase 14##AF038844|DUSP14|11072|dual specificity phosphatase 14##BC000370|DUSP14|11072|dual specificity phosphatase 14##BC004448|DUSP14|11072|dual specificity phosphatase 14##AK314894|DUSP14|11072|dual specificity phosphatase 14##NM_007026|DUSP14|11072|dual specificity phosphatase 14##BC117313|SYNRG|11276|synergin, gamma##BC143452|SYNRG|11276|synergin, gamma##BC143476|SYNRG|11276|synergin, gamma##BC143478|SYNRG|11276|synergin, gamma##BC084536|SYNRG|11276|synergin, gamma##BC090930|SYNRG|11276|synergin, gamma##AF169548|SYNRG|11276|synergin, gamma##AK302821|SYNRG|11276|synergin, gamma##NM_001163544|SYNRG|11276|synergin, gamma##NM_001163545|SYNRG|11276|synergin, gamma##NM_001163546|SYNRG|11276|synergin, gamma##NM_001163547|SYNRG|11276|synergin, gamma##NM_007247|SYNRG|11276|synergin, gamma##NM_080550|SYNRG|11276|synergin, gamma##NM_198882|SYNRG|11276|synergin, gamma##BC006489|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AB208938|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	0.0	0.0	
chr3	48594929	48595023	reg1008215.p2	4.690	+	DQ891635 DQ894825 BC010269 NM_004567 AF108765 D49818 TSC_hg19_v1_chr3_-_48594237 AK299097 AK312623 AY707863 AY714243 AY756062 AY756063 AY756064	-711	-	AK124652 TSC_hg19_v1_chr3_-_48541588 AB527510 AK075441 AF520698 NM_016479	-53402	-	TSC_hg19_v1_chr3_-_48514495 AB097007 BC020279 AL117413 AK310083 AL832568 AF151051 BC001463 AK027728 AK298799	-80445	-	TSC_hg19_v1_chr3_-_48598563 AK298732	3581	-	BC002647 BC022096 NM_033199 TSC_hg19_v1_chr3_-_48601218	6234	-	NM_000094 L02870 TSC_hg19_v1_chr3_-_48632733	37718	-	DQ891635|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##DQ894825|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##BC010269|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##NM_004567|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AF108765|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##D49818|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AK299097|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AK312623|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY707863|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY714243|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY756062|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY756063|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY756064|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AK124652|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AK075441|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AF520698|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##NM_016479|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AB097007|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##BC020279|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AL117413|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AL832568|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AF151051|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##BC001463|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AK298799|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AK298732|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##BC002647|UCN2|90226|urocortin 2##BC022096|UCN2|90226|urocortin 2##NM_033199|UCN2|90226|urocortin 2##NM_000094|COL7A1|1294|collagen, type VII, alpha 1##L02870|COL7A1|1294|collagen, type VII, alpha 1	0.018141	0.0	
chr16	2560501	2560610	reg1008042.p1	4.689	+	TSC_hg19_v1_chr16_+_2525149 BC112389 NM_001199107 NM_020705 AB032997	-35424	+	NM_006181 U86759	-39056	+	AK128408 TSC_hg19_v1_chr16_+_2510099 NM_025108 AK093788 AK301929 AX748307 BC018719 AK023971	-50443	+	TSC_hg19_v1_chr16_+_2563709 NM_001198569 M62762 NM_001694	3229	+	TSC_hg19_v1_chr16_+_2563952 BC009290	3390	+	TSC_hg19_v1_chr16_+_2563977 BC007389 BC004537	3426	+	BC112389|TBC1D24|57465|TBC1 domain family, member 24##NM_001199107|TBC1D24|57465|TBC1 domain family, member 24##NM_020705|TBC1D24|57465|TBC1 domain family, member 24##AB032997|TBC1D24|57465|TBC1 domain family, member 24##NM_006181|NTN3|4917|netrin 3##U86759|NTN3|4917|netrin 3##AK128408|C16orf59|80178|chromosome 16 open reading frame 59##NM_025108|C16orf59|80178|chromosome 16 open reading frame 59##AK093788|C16orf59|80178|chromosome 16 open reading frame 59##AK301929|C16orf59|80178|chromosome 16 open reading frame 59##BC018719|C16orf59|80178|chromosome 16 open reading frame 59##AK023971|C16orf59|80178|chromosome 16 open reading frame 59##NM_001198569|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##M62762|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##NM_001694|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##BC009290|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##BC007389|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c##BC004537|ATP6V0C|527|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c	0.01378	0.0	
chr19	53219143	53219254	reg1009757.p1	4.689	+	TSC_hg19_v1_chr19_-_53193740 AK289399 AK075066 NM_001242531 NM_001242538	-25388	-	TSC_hg19_v1_chr19_-_53141603 BC032867 AK027518 NM_001105549 NM_001105550 NM_001105551 NM_001105552 NM_001105553 NM_001105554 NM_018300	-77574	-	BC067346 NM_001172655	-145282	+	AK097434 NM_030972	13936	-	BC028590 AK091389 AX746954 NM_001161501 NM_001161499 NM_001161500	19100	-	BX640933 AK131231 NM_198457	70826	-	AK289399|ZNF83|55769|zinc finger protein 83##AK075066|ZNF83|55769|zinc finger protein 83##NM_001242531|ZNF83|55769|zinc finger protein 83##NM_001242538|ZNF83|55769|zinc finger protein 83##BC032867|ZNF83|55769|zinc finger protein 83##AK027518|ZNF83|55769|zinc finger protein 83##NM_001105549|ZNF83|55769|zinc finger protein 83##NM_001105550|ZNF83|55769|zinc finger protein 83##NM_001105551|ZNF83|55769|zinc finger protein 83##NM_001105552|ZNF83|55769|zinc finger protein 83##NM_001105553|ZNF83|55769|zinc finger protein 83##NM_001105554|ZNF83|55769|zinc finger protein 83##NM_018300|ZNF83|55769|zinc finger protein 83##BC067346|ZNF701|55762|zinc finger protein 701##NM_001172655|ZNF701|55762|zinc finger protein 701##AK097434|ZNF611|81856|zinc finger protein 611##NM_030972|ZNF611|81856|zinc finger protein 611##BC028590|ZNF611|81856|zinc finger protein 611##AK091389|ZNF611|81856|zinc finger protein 611##NM_001161501|ZNF611|81856|zinc finger protein 611##NM_001161499|ZNF611|81856|zinc finger protein 611##NM_001161500|ZNF611|81856|zinc finger protein 611##BX640933|ZNF600|162966|zinc finger protein 600##AK131231|ZNF600|162966|zinc finger protein 600##NM_198457|ZNF600|162966|zinc finger protein 600	0.0	0.0	
chr20	14382283	14382415	reg1009228.p1	4.689	+	AB040902 AF169677 TSC_hg19_v1_chr20_-_14318278 BC020870 AK027297 AK074883 NM_013281 NM_198391	-64093	-	TSC_hg19_v1_chr20_+_13976263 BC101216 BC101217 BC101218 BC101219 BC126936 BC128036 EF159161	-406013	+	AK131348 TSC_hg19_v1_chr20_+_13976161 NM_080676	-406243	+	BC018687 NM_001033087	795154	+	TSC_hg19_v1_chr20_-_16553995 AB385485 CU690726 AK307399 AB046810 BC150261 BX647572 AK095322 AY166853 BC050577 NM_001199865 NM_001199866 NM_024704	2171664	-	NM_003092 NM_198220 TSC_hg19_v1_chr20_+_16710679 BC018022 BC036737 AK313004 BC022311 BC008311 M15841	2328314	+	AB040902|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AF169677|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC020870|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK027297|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK074883|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_013281|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_198391|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC101216|MACROD2|140733|MACRO domain containing 2##BC101217|MACROD2|140733|MACRO domain containing 2##BC101218|MACROD2|140733|MACRO domain containing 2##BC101219|MACROD2|140733|MACRO domain containing 2##BC126936|MACROD2|140733|MACRO domain containing 2##BC128036|MACROD2|140733|MACRO domain containing 2##EF159161|MACROD2|140733|MACRO domain containing 2##AK131348|MACROD2|140733|MACRO domain containing 2##NM_080676|MACROD2|140733|MACRO domain containing 2##BC018687|MACROD2|140733|MACRO domain containing 2##NM_001033087|MACROD2|140733|MACRO domain containing 2##AK307399|KIF16B|55614|kinesin family member 16B##AB046810|KIF16B|55614|kinesin family member 16B##BC150261|KIF16B|55614|kinesin family member 16B##BX647572|KIF16B|55614|kinesin family member 16B##AK095322|KIF16B|55614|kinesin family member 16B##AY166853|KIF16B|55614|kinesin family member 16B##BC050577|KIF16B|55614|kinesin family member 16B##NM_001199865|KIF16B|55614|kinesin family member 16B##NM_001199866|KIF16B|55614|kinesin family member 16B##NM_024704|KIF16B|55614|kinesin family member 16B##NM_003092|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##NM_198220|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC018022|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC036737|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##AK313004|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC022311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC008311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##M15841|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B	0.082371	0.0	
chr21	10600715	10600895	reg1011689.p1	4.689	+	None	None	None	None	None	None	None	None	None	AK308254 AK314285 TSC_hg19_v1_chr21_-_10990898 AF007118 AF495908 AY219886 AY219887 AY219888 AL833345 BC028719 NM_199259 NM_199260 NM_199261	390093	-	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	498094	-	AY172978 NM_174981 AY465173	4381694	+	AK308254|TPTE|7179|transmembrane phosphatase with tensin homology##AK314285|TPTE|7179|transmembrane phosphatase with tensin homology##AF007118|TPTE|7179|transmembrane phosphatase with tensin homology##AF495908|TPTE|7179|transmembrane phosphatase with tensin homology##AY219886|TPTE|7179|transmembrane phosphatase with tensin homology##AY219887|TPTE|7179|transmembrane phosphatase with tensin homology##AY219888|TPTE|7179|transmembrane phosphatase with tensin homology##AL833345|TPTE|7179|transmembrane phosphatase with tensin homology##BC028719|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199259|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199260|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199261|TPTE|7179|transmembrane phosphatase with tensin homology##BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B	0.992443	0.0	
chr7	101007378	101007464	reg1009959.p1	4.689	+	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-1204	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-42383	-	TSC_hg19_v1_chr7_-_100895576 AK311665 AK310968 AK091729	-111855	-	BC002778 NM_138403	265154	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	451788	+	M74099 NM_181552	453460	+	NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##AK311665|FIS1|51024|fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)##AK310968|FIS1|51024|fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1	0.0	0.992188	CTCF.p2:-28:0.992
chr14	50571724	50571855	reg1011806.p2	4.688	+	AF390030 NM_001014830	-12429	-	AK091232 AX746864 NM_001012706	-97552	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-211383	+	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	11481	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	126194	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	126311	-	AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)	0.0	0.34223	CTCF.p2:79:0.342
chr17	6955509	6955609	reg1011185.p1	4.688	+	AK074674 NM_153357	-8318	-	TSC_hg19_v1_chr17_+_6939347 BC142618 NM_201566	-16174	+	TSC_hg19_v1_chr17_+_6926416 AK122893	-29142	+	D50532 BC027858 BC039011 AK291975 AK292363 NM_006344 NM_182906	27992	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	62034	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	62430	-	AK074674|SLC16A11|162515|solute carrier family 16, member 11 (monocarboxylic acid transporter 11)##NM_153357|SLC16A11|162515|solute carrier family 16, member 11 (monocarboxylic acid transporter 11)##BC142618|SLC16A13|201232|solute carrier family 16, member 13 (monocarboxylic acid transporter 13)##NM_201566|SLC16A13|201232|solute carrier family 16, member 13 (monocarboxylic acid transporter 13)##AK122893|BCL6B|255877|B-cell CLL/lymphoma 6, member B##D50532|CLEC10A|10462|C-type lectin domain family 10, member A##BC027858|CLEC10A|10462|C-type lectin domain family 10, member A##BC039011|CLEC10A|10462|C-type lectin domain family 10, member A##AK291975|CLEC10A|10462|C-type lectin domain family 10, member A##AK292363|CLEC10A|10462|C-type lectin domain family 10, member A##NM_006344|CLEC10A|10462|C-type lectin domain family 10, member A##NM_182906|CLEC10A|10462|C-type lectin domain family 10, member A##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2	0.0	0.12082	
chr17	73861647	73861713	reg1005619.p2	4.688	+	AB464357 CU679759 DQ891052 DQ894231 TSC_hg19_v1_chr17_-_73851417 AK293214 AF087866 BC007452 AK057881 BC010616 AK294082 AK294155 AK300875 NM_012478	-10242	-	TSC_hg19_v1_chr17_-_73840622 BC067084 NM_199242 AK300316	-20896	-	TSC_hg19_v1_chr17_-_73840495 AK024474	-21169	-	TSC_hg19_v1_chr17_-_73874063 BC017299	12383	-	TSC_hg19_v1_chr17_-_73874663 AY026763 NM_033452	12971	-	TSC_hg19_v1_chr17_-_73893051 BC021259 NM_173547	31383	-	DQ891052|WBP2|23558|WW domain binding protein 2##DQ894231|WBP2|23558|WW domain binding protein 2##AK293214|WBP2|23558|WW domain binding protein 2##AF087866|WBP2|23558|WW domain binding protein 2##BC007452|WBP2|23558|WW domain binding protein 2##AK057881|WBP2|23558|WW domain binding protein 2##BC010616|WBP2|23558|WW domain binding protein 2##AK294082|WBP2|23558|WW domain binding protein 2##AK294155|WBP2|23558|WW domain binding protein 2##AK300875|WBP2|23558|WW domain binding protein 2##NM_012478|WBP2|23558|WW domain binding protein 2##BC067084|UNC13D|201294|unc-13 homolog D (C. elegans)##NM_199242|UNC13D|201294|unc-13 homolog D (C. elegans)##AK300316|UNC13D|201294|unc-13 homolog D (C. elegans)##AK024474|UNC13D|201294|unc-13 homolog D (C. elegans)##BC017299|TRIM47|91107|tripartite motif containing 47##AY026763|TRIM47|91107|tripartite motif containing 47##NM_033452|TRIM47|91107|tripartite motif containing 47##BC021259|TRIM65|201292|tripartite motif containing 65##NM_173547|TRIM65|201292|tripartite motif containing 65	0.986374	0.0	denovo_WM_7:53:0.807
chr1	23425359	23425456	reg1010073.p1	4.687	+	TSC_hg19_v1_chr1_+_23345985 AB011173 BC040194 AK290328 BC048134	-79359	+	TSC_hg19_v1_chr1_+_23345960 NM_001009999 NM_015013	-79452	+	NM_001242521	-83065	-	TSC_hg19_v1_chr1_-_23495311 BC051733 BC002428	69900	-	TSC_hg19_v1_chr1_-_23495331 BC016175	69929	-	TSC_hg19_v1_chr1_-_23495350 NM_001142546 NM_033631	69943	-	AB011173|KDM1A|23028|lysine (K)-specific demethylase 1A##BC040194|KDM1A|23028|lysine (K)-specific demethylase 1A##AK290328|KDM1A|23028|lysine (K)-specific demethylase 1A##BC048134|KDM1A|23028|lysine (K)-specific demethylase 1A##NM_001009999|KDM1A|23028|lysine (K)-specific demethylase 1A##NM_015013|KDM1A|23028|lysine (K)-specific demethylase 1A##NM_001242521|LOC729059|729059|uncharacterized LOC729059##BC051733|LUZP1|7798|leucine zipper protein 1##BC002428|LUZP1|7798|leucine zipper protein 1##BC016175|LUZP1|7798|leucine zipper protein 1##NM_001142546|LUZP1|7798|leucine zipper protein 1##NM_033631|LUZP1|7798|leucine zipper protein 1	0.0	0.812612	CTCF.p2:-8:0.813
chr1	41984412	41984580	reg1011862.p1	4.687	+	BC034393 X55177 M65199 NM_001956	-34177	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-276660	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-276711	-	TSC_hg19_v1_chr1_-_42384357 BC040942	399846	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	399877	-	TSC_hg19_v1_chr1_-_42501606 BC046120	517133	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	1.757619	0.0	denovo_WM_7:0:0.332	denovo_WM_7:1:0.332	denovo_WM_7:2:0.332	denovo_WM_7:-45:0.464
chr1	95538019	95538199	reg1013445.p1	4.687	+	TSC_hg19_v1_chr1_-_95392690 S80562 BC025372 AK312370 AK298145 NM_001839	-145469	-	CR541848 CU692978 DQ893013 DQ896258 TSC_hg19_v1_chr1_-_95392498	-145636	-	TSC_hg19_v1_chr1_+_95286194 AK300193	-251910	+	TSC_hg19_v1_chr1_-_95538474 BC011706 AK289395 NM_144988	377	-	BC108263 NM_001199679	19963	+	TSC_hg19_v1_chr1_+_95582939 NM_152487 AK056404 BC137457 BC137458 BC139737	44851	+	S80562|CNN3|1266|calponin 3, acidic##BC025372|CNN3|1266|calponin 3, acidic##AK312370|CNN3|1266|calponin 3, acidic##AK298145|CNN3|1266|calponin 3, acidic##NM_001839|CNN3|1266|calponin 3, acidic##CR541848|CNN3|1266|calponin 3, acidic##DQ893013|CNN3|1266|calponin 3, acidic##DQ896258|CNN3|1266|calponin 3, acidic##AK300193|SLC44A3|126969|solute carrier family 44, member 3##BC011706|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##AK289395|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##NM_144988|ALG14|199857|asparagine-linked glycosylation 14 homolog (S. cerevisiae)##BC108263|TMEM56|148534|transmembrane protein 56##NM_001199679|TMEM56|148534|transmembrane protein 56##NM_152487|TMEM56|148534|transmembrane protein 56##AK056404|TMEM56|148534|transmembrane protein 56##BC137457|TMEM56|148534|transmembrane protein 56##BC137458|TMEM56|148534|transmembrane protein 56##BC139737|TMEM56|148534|transmembrane protein 56	0.0	0.0	
chr20	17947008	17947159	reg1012586.p2	4.687	+	BC054871 NM_001014977 NM_178477 BC062735	-266485	+	NM_001159495	-272764	+	TSC_hg19_v1_chr20_-_17662888 AB037819 BC009700 NM_001042576 NM_004587	-284200	-	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	2131	-	TSC_hg19_v1_chr20_-_17949438 BC002724 BC062638 BC064555 BC073171 AK123903 AK308017 AK296947 BC000100 AF121855 NM_152227	2357	-	TSC_hg19_v1_chr20_+_17949742 AF306686 AK315532 AF306684 AF306685 AK027503 BC016869 NM_052865	2579	+	BC054871|BANF2|140836|barrier to autointegration factor 2##NM_001014977|BANF2|140836|barrier to autointegration factor 2##NM_178477|BANF2|140836|barrier to autointegration factor 2##BC062735|BANF2|140836|barrier to autointegration factor 2##NM_001159495|BANF2|140836|barrier to autointegration factor 2##AB037819|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC009700|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001042576|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_004587|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5##BC002724|SNX5|27131|sorting nexin 5##BC062638|SNX5|27131|sorting nexin 5##AK123903|SNX5|27131|sorting nexin 5##AK308017|SNX5|27131|sorting nexin 5##AK296947|SNX5|27131|sorting nexin 5##BC000100|SNX5|27131|sorting nexin 5##AF121855|SNX5|27131|sorting nexin 5##NM_152227|SNX5|27131|sorting nexin 5##AF306686|C20orf72|92667|chromosome 20 open reading frame 72##AK315532|C20orf72|92667|chromosome 20 open reading frame 72##AF306684|C20orf72|92667|chromosome 20 open reading frame 72##AF306685|C20orf72|92667|chromosome 20 open reading frame 72##AK027503|C20orf72|92667|chromosome 20 open reading frame 72##BC016869|C20orf72|92667|chromosome 20 open reading frame 72##NM_052865|C20orf72|92667|chromosome 20 open reading frame 72	0.998285	0.0	denovo_WM_7:-47:0.494	denovo_WM_7:-48:0.494
chr20	37438613	37438742	reg1007024.p1	4.687	+	TSC_hg19_v1_chr20_+_37434351 AB020630 BC152467 NM_001172735 NM_015568 AK311244 BC131801	-4323	+	BC038402 NM_024855 TSC_hg19_v1_chr20_+_37377109 AK022847	-61565	+	TSC_hg19_v1_chr20_+_37353128 AK055051 BC053582	-85518	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	116312	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	116391	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	152312	+	AB020630|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC152467|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_001172735|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##NM_015568|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC131801|PPP1R16B|26051|protein phosphatase 1, regulatory subunit 16B##BC038402|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##NM_024855|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK022847|ACTR5|79913|ARP5 actin-related protein 5 homolog (yeast)##AK055051|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##BC053582|SLC32A1|140679|solute carrier family 32 (GABA vesicular transporter), member 1##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35	0.992407	0.0	
chr2	13689578	13689668	reg1007921.p2	4.686	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-831226	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-831707	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-832370	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1083198	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1083228	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2011806	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	1.990823	0.0	denovo_WM_7:-73:0.208	denovo_WM_7:-95:0.209
chr4	100772546	100772639	reg1006798.p1	4.686	+	NM_014395 AF186022 AF163254 AF161551 AK301355 AF178987 BC012924 AB528911 DQ893576 DQ894665	-34567	+	TSC_hg19_v1_chr4_+_100495977 AK225328 BC062696 X59657 AK290793 BC125110 BC125111 X75500 X91148	-276585	+	AK302602 NM_000253	-287353	+	AF130115 TSC_hg19_v1_chr4_-_100815585 AK311755 BC110402 BC005340 AK223311 AF201947 BC026245	42983	-	TSC_hg19_v1_chr4_-_100815667 NM_001243736 NM_021970	43092	-	HQ257892 TSC_hg19_v1_chr4_-_100867740 AY358272 BX537609 AL833412 BC022248	95162	-	NM_014395|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF186022|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF163254|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF161551|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AK301355|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AF178987|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##BC012924|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##DQ893576|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##DQ894665|DAPP1|27071|dual adaptor of phosphotyrosine and 3-phosphoinositides##AK225328|MTTP|4547|microsomal triglyceride transfer protein##BC062696|MTTP|4547|microsomal triglyceride transfer protein##X59657|MTTP|4547|microsomal triglyceride transfer protein##AK290793|MTTP|4547|microsomal triglyceride transfer protein##BC125110|MTTP|4547|microsomal triglyceride transfer protein##BC125111|MTTP|4547|microsomal triglyceride transfer protein##X75500|MTTP|4547|microsomal triglyceride transfer protein##X91148|MTTP|4547|microsomal triglyceride transfer protein##AK302602|MTTP|4547|microsomal triglyceride transfer protein##NM_000253|MTTP|4547|microsomal triglyceride transfer protein##AF130115|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AK311755|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC110402|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC005340|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AK223311|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##AF201947|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##BC026245|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##NM_001243736|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##NM_021970|LAMTOR3|8649|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3##HQ257892|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##AY358272|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##BX537609|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##AL833412|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14##BC022248|DNAJB14|79982|DnaJ (Hsp40) homolog, subfamily B, member 14	0.099834	0.0	
chr12	42482654	42482760	reg1009882.p1	4.685	+	AK294431 AK131554 NM_013377 AK091096 AX746777 BC093744 BC093746	-651120	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	-900499	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	-1396425	+	TSC_hg19_v1_chr12_-_42538503 AK125141 NM_001099650 NM_173601 BC030023	55872	-	CU691510 EU446625 EU446756 AB527838 TSC_hg19_v1_chr12_-_42632024 BC037777 AK127531 AK291355 AK296191 AK294260 NM_001190977	149328	-	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	149464	-	AK294431|PDZRN4|29951|PDZ domain containing ring finger 4##AK131554|PDZRN4|29951|PDZ domain containing ring finger 4##NM_013377|PDZRN4|29951|PDZ domain containing ring finger 4##AK091096|PDZRN4|29951|PDZ domain containing ring finger 4##BC093744|PDZRN4|29951|PDZ domain containing ring finger 4##BC093746|PDZRN4|29951|PDZ domain containing ring finger 4##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##AK125141|GXYLT1|283464|glucoside xylosyltransferase 1##NM_001099650|GXYLT1|283464|glucoside xylosyltransferase 1##NM_173601|GXYLT1|283464|glucoside xylosyltransferase 1##BC030023|GXYLT1|283464|glucoside xylosyltransferase 1##EU446625|YAF2|10138|YY1 associated factor 2##EU446756|YAF2|10138|YY1 associated factor 2##BC037777|YAF2|10138|YY1 associated factor 2##AK127531|YAF2|10138|YY1 associated factor 2##AK291355|YAF2|10138|YY1 associated factor 2##AK296191|YAF2|10138|YY1 associated factor 2##AK294260|YAF2|10138|YY1 associated factor 2##NM_001190977|YAF2|10138|YY1 associated factor 2##NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2	0.0	0.0	
chr18	36542181	36542258	reg1010767.p2	4.685	+	NM_001025087 NM_001025088 NM_001025089 NM_020180	-1396220	-	AF329265 AK295009 BC045711 TSC_hg19_v1_chr18_-_35145684 AK074596 AF248650 BC001946 BC004167 AB209774	-1396523	-	TSC_hg19_v1_chr18_-_34409124 BC087845 NM_015476	-2133099	-	TSC_hg19_v1_chr18_-_36915657 D28405	373437	-	TSC_hg19_v1_chr18_-_37380279 AK090603	838049	-	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	2992980	+	NM_001025087|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025088|CELF4|56853|CUGBP, Elav-like family member 4##NM_001025089|CELF4|56853|CUGBP, Elav-like family member 4##NM_020180|CELF4|56853|CUGBP, Elav-like family member 4##AF329265|CELF4|56853|CUGBP, Elav-like family member 4##AK295009|CELF4|56853|CUGBP, Elav-like family member 4##BC045711|CELF4|56853|CUGBP, Elav-like family member 4##AK074596|CELF4|56853|CUGBP, Elav-like family member 4##AF248650|CELF4|56853|CUGBP, Elav-like family member 4##BC001946|CELF4|56853|CUGBP, Elav-like family member 4##BC004167|CELF4|56853|CUGBP, Elav-like family member 4##AB209774|CELF4|56853|CUGBP, Elav-like family member 4##BC087845|TPGS2|25941|tubulin polyglutamylase complex subunit 2##NM_015476|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK090603|LOC647946|647946|uncharacterized LOC647946##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3	0.996524	0.0	denovo_WM_7:-1:0.857
chr2	150454197	150454285	reg1009534.p1	4.685	+	TSC_hg19_v1_chr2_-_150444290 NM_015702	-9934	-	TSC_hg19_v1_chr2_-_150444250 BC023995 BC010894 AK310001 AF161510 BC022859 BC000932	-9984	-	AF131802 TSC_hg19_v1_chr2_-_150444230 AK313284	-10016	-	X97758 BC012513 TSC_hg19_v1_chr2_-_151344182 AK298007 AK311312 NM_005168 AK313224	889923	-	TSC_hg19_v1_chr2_-_152118378 BC136410 BC136411 AK127552 NM_198557	1664092	-	TSC_hg19_v1_chr2_-_152146171 BC001268	1691911	-	NM_015702|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC023995|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC010894|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##AK310001|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##AF161510|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC022859|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##BC000932|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##AF131802|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##AK313284|MMADHC|27249|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria##X97758|RND3|390|Rho family GTPase 3##BC012513|RND3|390|Rho family GTPase 3##AK298007|RND3|390|Rho family GTPase 3##NM_005168|RND3|390|Rho family GTPase 3##AK313224|RND3|390|Rho family GTPase 3##BC136410|RBM43|375287|RNA binding motif protein 43##BC136411|RBM43|375287|RNA binding motif protein 43##AK127552|RBM43|375287|RNA binding motif protein 43##NM_198557|RBM43|375287|RNA binding motif protein 43##BC001268|NMI|9111|N-myc (and STAT) interactor	0.0	0.673808	CTCF.p2:4:0.674
chr2	64558104	64558235	reg1010716.p2	4.685	+	TSC_hg19_v1_chr2_-_64371555 AK022261 BC063611 BC050533 AK312441 BC050019 NM_020651	-186645	-	TSC_hg19_v1_chr2_-_64246563 AK292669 AK292889	-311664	-	BC030275 NM_001005739 NM_016516 TSC_hg19_v1_chr2_-_64246305	-311907	-	TSC_hg19_v1_chr2_+_64681295 NM_014181	123131	+	TSC_hg19_v1_chr2_+_64681654 BC062691 AK314656 BC036082 AF161508 AB528153 AM393169 CU687590	123479	+	TSC_hg19_v1_chr2_+_64751481 NM_001002243 NM_017657 NM_203437 BC047529 AK000087 AK222821	193315	+	BC063611|PELI1|57162|pellino homolog 1 (Drosophila)##BC050533|PELI1|57162|pellino homolog 1 (Drosophila)##AK312441|PELI1|57162|pellino homolog 1 (Drosophila)##BC050019|PELI1|57162|pellino homolog 1 (Drosophila)##NM_020651|PELI1|57162|pellino homolog 1 (Drosophila)##AK292669|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##AK292889|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##BC030275|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_001005739|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_016516|VPS54|51542|vacuolar protein sorting 54 homolog (S. cerevisiae)##NM_014181|LGALSL|29094|lectin, galactoside-binding-like##BC062691|LGALSL|29094|lectin, galactoside-binding-like##AK314656|LGALSL|29094|lectin, galactoside-binding-like##BC036082|LGALSL|29094|lectin, galactoside-binding-like##AF161508|LGALSL|29094|lectin, galactoside-binding-like##AM393169|LGALSL|29094|lectin, galactoside-binding-like##NM_001002243|AFTPH|54812|aftiphilin##NM_017657|AFTPH|54812|aftiphilin##NM_203437|AFTPH|54812|aftiphilin##BC047529|AFTPH|54812|aftiphilin##AK000087|AFTPH|54812|aftiphilin##AK222821|AFTPH|54812|aftiphilin	0.0	0.660851	CTCF.p2:13:0.639
chr8	107717452	107717552	reg1010416.p1	4.685	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	-47387	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	-47514	+	AK296561 NM_001198532	-257351	+	AK303695 NM_001198534 NM_001198535 AB075503 AK302844 AK316153 FN650109	20853	+	AF503617 AB463396 AM393063 BC105103 BC105105 AL833422 AL832152 NM_139166 AK092694 AX747674	64942	-	U83508 BC152411 BC152419 D13628 AY055342 NM_001146 NM_001199859 BX648814	792686	-	AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##AK303695|OXR1|55074|oxidation resistance 1##NM_001198534|OXR1|55074|oxidation resistance 1##NM_001198535|OXR1|55074|oxidation resistance 1##AB075503|OXR1|55074|oxidation resistance 1##AK302844|OXR1|55074|oxidation resistance 1##AK316153|OXR1|55074|oxidation resistance 1##FN650109|OXR1|55074|oxidation resistance 1##AF503617|ABRA|137735|actin-binding Rho activating protein##AM393063|ABRA|137735|actin-binding Rho activating protein##BC105103|ABRA|137735|actin-binding Rho activating protein##BC105105|ABRA|137735|actin-binding Rho activating protein##AL833422|ABRA|137735|actin-binding Rho activating protein##AL832152|ABRA|137735|actin-binding Rho activating protein##NM_139166|ABRA|137735|actin-binding Rho activating protein##AK092694|ABRA|137735|actin-binding Rho activating protein##U83508|ANGPT1|284|angiopoietin 1##BC152411|ANGPT1|284|angiopoietin 1##BC152419|ANGPT1|284|angiopoietin 1##D13628|ANGPT1|284|angiopoietin 1##AY055342|ANGPT1|284|angiopoietin 1##NM_001146|ANGPT1|284|angiopoietin 1##NM_001199859|ANGPT1|284|angiopoietin 1##BX648814|ANGPT1|284|angiopoietin 1	0.0	0.44408	CTCF.p2:-19:0.444
chr1	205476592	205476670	reg1009510.p1	4.684	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-2809	+	NM_002596 NM_212502 NM_212503 TSC_hg19_v1_chr1_+_205473688 AK293756 AK296320 AK295654	-2926	+	AB084764 AB084765 AB085610 AB096677 AB096678 AB096679 AB096680 AB096681 AB096682 BC036636 AK302392 NM_001001552 NM_001199050 NM_001199051 NM_001199052	-85435	-	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	61496	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	61582	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	124275	-	AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##NM_002596|CDK18|5129|cyclin-dependent kinase 18##NM_212502|CDK18|5129|cyclin-dependent kinase 18##NM_212503|CDK18|5129|cyclin-dependent kinase 18##AK293756|CDK18|5129|cyclin-dependent kinase 18##AK296320|CDK18|5129|cyclin-dependent kinase 18##AK295654|CDK18|5129|cyclin-dependent kinase 18##AB084764|LEMD1|93273|LEM domain containing 1##AB084765|LEMD1|93273|LEM domain containing 1##AB085610|LEMD1|93273|LEM domain containing 1##AB096677|LEMD1|93273|LEM domain containing 1##AB096678|LEMD1|93273|LEM domain containing 1##AB096679|LEMD1|93273|LEM domain containing 1##AB096680|LEMD1|93273|LEM domain containing 1##AB096681|LEMD1|93273|LEM domain containing 1##AB096682|LEMD1|93273|LEM domain containing 1##BC036636|LEMD1|93273|LEM domain containing 1##AK302392|LEMD1|93273|LEM domain containing 1##NM_001001552|LEMD1|93273|LEM domain containing 1##NM_001199050|LEMD1|93273|LEM domain containing 1##NM_001199051|LEMD1|93273|LEM domain containing 1##NM_001199052|LEMD1|93273|LEM domain containing 1##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)	0.998136	0.0	denovo_WM_7:-26:0.711	denovo_WM_7:-27:0.276
chr1	234407098	234407249	reg1008585.p1	4.684	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-57167	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	-366561	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	-657254	+	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	102199	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	207687	-	TSC_hg19_v1_chr1_-_234743489 BC020516	336353	-	BC037878|SLC35F3|148641|solute carrier family 35, member F3##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.0	0.0	
chr1	9910278	9910405	reg1009663.p1	4.684	+	AF438482 NM_001009566 NM_014944 AB020718	-25775	-	TSC_hg19_v1_chr1_-_9884024 BC033902	-26297	-	TSC_hg19_v1_chr1_-_9884023 AK304813	-26320	-	TSC_hg19_v1_chr1_-_9970314 AB021262 BC035794 BC014300 NM_001012329 NM_020248	59968	-	BC063443 NM_032368	92484	-	TSC_hg19_v1_chr1_-_10003358 AB060688 BC007240 AK304348 AK312550	93032	-	AF438482|CLSTN1|22883|calsyntenin 1##NM_001009566|CLSTN1|22883|calsyntenin 1##NM_014944|CLSTN1|22883|calsyntenin 1##AB020718|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##AB021262|CTNNBIP1|56998|catenin, beta interacting protein 1##BC014300|CTNNBIP1|56998|catenin, beta interacting protein 1##NM_001012329|CTNNBIP1|56998|catenin, beta interacting protein 1##NM_020248|CTNNBIP1|56998|catenin, beta interacting protein 1##BC063443|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##NM_032368|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AB060688|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC007240|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK304348|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK312550|LZIC|84328|leucine zipper and CTNNBIP1 domain containing	0.0	0.0	
chr21	37525462	37525579	reg1013241.p1	4.684	+	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	-18171	+	TSC_hg19_v1_chr21_+_37442321 AK294142 J04056 AK308691 AK311219 BC015640 AK314879 BC002511 DQ892353 DQ895559 BT019843 CR541708	-83165	+	AB124848 TSC_hg19_v1_chr21_+_37442272 NM_001757	-83267	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	3111	-	AJ237839 NM_005128	11318	+	TSC_hg19_v1_chr21_+_37692548 BC058002 NM_015358 AK295133 BC007311 D50926 BC094779 BC132731 BC144116 AK292957 AB489143	166999	+	AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##AK294142|CBR1|873|carbonyl reductase 1##J04056|CBR1|873|carbonyl reductase 1##AK308691|CBR1|873|carbonyl reductase 1##AK311219|CBR1|873|carbonyl reductase 1##BC015640|CBR1|873|carbonyl reductase 1##AK314879|CBR1|873|carbonyl reductase 1##BC002511|CBR1|873|carbonyl reductase 1##DQ892353|CBR1|873|carbonyl reductase 1##DQ895559|CBR1|873|carbonyl reductase 1##BT019843|CBR1|873|carbonyl reductase 1##CR541708|CBR1|873|carbonyl reductase 1##AB124848|CBR1|873|carbonyl reductase 1##NM_001757|CBR1|873|carbonyl reductase 1##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2##BC058002|MORC3|23515|MORC family CW-type zinc finger 3##NM_015358|MORC3|23515|MORC family CW-type zinc finger 3##AK295133|MORC3|23515|MORC family CW-type zinc finger 3##BC007311|MORC3|23515|MORC family CW-type zinc finger 3##D50926|MORC3|23515|MORC family CW-type zinc finger 3##BC094779|MORC3|23515|MORC family CW-type zinc finger 3##BC132731|MORC3|23515|MORC family CW-type zinc finger 3##BC144116|MORC3|23515|MORC family CW-type zinc finger 3##AK292957|MORC3|23515|MORC family CW-type zinc finger 3	0.830345	0.863999	CTCF.p2:-3:0.864	denovo_WM_7:47:0.531	denovo_WM_7:49:0.213
chr4	2599546	2599648	reg1011562.p2	4.684	+	NM_001185009 BC031935	-128417	+	TSC_hg19_v1_chr4_+_2470846 AK312534 AK309509 U95140	-128721	+	TSC_hg19_v1_chr4_+_2470845 AB000468	-128753	+	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	27576	+	AK026176 NM_001161527	158153	-	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	158466	-	NM_001185009|RNF4|6047|ring finger protein 4##BC031935|RNF4|6047|ring finger protein 4##AK312534|RNF4|6047|ring finger protein 4##AK309509|RNF4|6047|ring finger protein 4##U95140|RNF4|6047|ring finger protein 4##AB000468|RNF4|6047|ring finger protein 4##AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2	0.020982	0.0	
chr7	100005299	100005424	reg1010777.p2	4.684	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	-34156	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	-34265	+	AJ400845 NM_178238 AF161081	-49730	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	20941	-	NM_001194990 NM_001194991 NM_001194992 TSC_hg19_v1_chr7_+_100026412	21051	+	TSC_hg19_v1_chr7_+_100026415 AK055964	21067	+	AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_001194990|MEPCE|56257|methylphosphate capping enzyme##NM_001194991|MEPCE|56257|methylphosphate capping enzyme##NM_001194992|MEPCE|56257|methylphosphate capping enzyme##AK055964|MEPCE|56257|methylphosphate capping enzyme	0.0	0.397629	CTCF.p2:14:0.398
chr7	6765326	6765449	reg1003862.p2	4.684	+	AK092111 TSC_hg19_v1_chr7_+_6746715	-18678	+	TSC_hg19_v1_chr7_-_6746579 BC051892 BC154414 AB021643 NM_006956 NM_016265 AK293925	-18807	-	NM_017560	-109861	+	TSC_hg19_v1_chr7_+_6769414 AK296451	4028	+	AK314983 BC034495 NM_001099697 NM_173565	28352	+	AK296026 CU679629 AK000993 TSC_hg19_v1_chr7_-_6865849	100451	-	BC051892|ZNF12|7559|zinc finger protein 12##BC154414|ZNF12|7559|zinc finger protein 12##AB021643|ZNF12|7559|zinc finger protein 12##NM_006956|ZNF12|7559|zinc finger protein 12##NM_016265|ZNF12|7559|zinc finger protein 12##AK293925|ZNF12|7559|zinc finger protein 12##NM_017560|ZNF853|54753|zinc finger protein 853##AK314983|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##BC034495|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##NM_001099697|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##NM_173565|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##AK296026|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##AK000993|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	1.994147	0.0	
chr1	228386780	228386924	reg1017550.p1	4.683	+	TSC_hg19_v1_chr1_+_228353834 AK022796	-32991	+	NM_001010867 TSC_hg19_v1_chr1_+_228353504 BC028052	-33380	+	BC089439 NM_020435	-49438	+	TSC_hg19_v1_chr1_+_228395744 NM_001098623 NM_052843	8948	+	TSC_hg19_v1_chr1_-_228401360 BC027909 AK056556	14507	-	TSC_hg19_v1_chr1_-_228463735 AK294019	76895	-	AK022796|IBA57|200205|IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)##NM_001010867|IBA57|200205|IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)##BC028052|IBA57|200205|IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)##BC089439|GJC2|57165|gap junction protein, gamma 2, 47kDa##NM_020435|GJC2|57165|gap junction protein, gamma 2, 47kDa##NM_001098623|OBSCN|84033|obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF##NM_052843|OBSCN|84033|obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF##BC027909|C1orf145|574407|chromosome 1 open reading frame 145##AK056556|C1orf145|574407|chromosome 1 open reading frame 145	0.974393	0.0	denovo_WM_7:-19:0.896
chr14	77393179	77393276	reg1007461.p2	4.683	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-100432	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-113965	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-114017	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	101457	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	101833	-	AK124327 TSC_hg19_v1_chr14_-_77542533	149306	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	0.997301	0.0	
chr19	11671503	11671644	reg1008733.p1	4.683	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-1540	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-21914	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-31616	-	X14618 TSC_hg19_v1_chr19_-_11688461	16878	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	16917	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	16957	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.0	0.471739	CTCF.p2:-34:0.433
chr10	98832780	98832912	reg1012961.p1	4.682	+	AK126886 BC024315 NM_015652 CU692918	-91779	+	TSC_hg19_v1_chr10_+_98592758 NM_032440 AL834245 AB058698	-240118	+	TSC_hg19_v1_chr10_-_98592186 AB593180	-240646	-	AY029183 AB383997 TSC_hg19_v1_chr10_-_98945570	112628	-	TSC_hg19_v1_chr10_-_98945606 BC146851	112749	-	AB017167 TSC_hg19_v1_chr10_-_98945702 BC028105 AB011537 BC146761 NM_003061 BC139909	112839	-	AK126886|C10orf12|26148|chromosome 10 open reading frame 12##BC024315|C10orf12|26148|chromosome 10 open reading frame 12##NM_015652|C10orf12|26148|chromosome 10 open reading frame 12##NM_032440|LCOR|84458|ligand dependent nuclear receptor corepressor##AL834245|LCOR|84458|ligand dependent nuclear receptor corepressor##AB058698|LCOR|84458|ligand dependent nuclear receptor corepressor##AY029183|SLIT1|6585|slit homolog 1 (Drosophila)##BC146851|SLIT1|6585|slit homolog 1 (Drosophila)##AB017167|SLIT1|6585|slit homolog 1 (Drosophila)##BC028105|SLIT1|6585|slit homolog 1 (Drosophila)##AB011537|SLIT1|6585|slit homolog 1 (Drosophila)##BC146761|SLIT1|6585|slit homolog 1 (Drosophila)##NM_003061|SLIT1|6585|slit homolog 1 (Drosophila)##BC139909|SLIT1|6585|slit homolog 1 (Drosophila)	0.990901	0.954549	denovo_WM_7:23:0.661	denovo_WM_7:24:0.319	CTCF.p2:-56:0.955
chr11	111984334	111984446	reg1011340.p1	4.682	+	TSC_hg19_v1_chr11_+_111957622 AB006202 AK075360 BC009574 BC012603 BC070307 BC071756 BT007238 CR456932 CU675071 DQ892701 DQ896292	-26769	+	TSC_hg19_v1_chr11_+_111957604 NM_003002 BC015188 BC005263 BC015992 BC071755 BC022350	-26819	+	TSC_hg19_v1_chr11_-_111957481 AF165967 AF152350 AF150087 BC000711 AK312169 AK025397 BC105986 BC106067 NM_012459	-26919	-	AF380360 AY044641 TSC_hg19_v1_chr11_-_112034813 AY266351 D49950 BC007007 AK311301 BC007461 NM_001243211 NM_001562	50368	-	BC029506 NM_031275 AF285600	53718	+	NM_031938 AK315300 BC041656 BC047934 AK091783 AX747181 AJ290393 CU692016 AF276432	61952	+	AB006202|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##AK075360|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC009574|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC012603|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC070307|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC071756|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BT007238|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##CR456932|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##DQ892701|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##DQ896292|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##NM_003002|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC015188|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC005263|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC015992|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC071755|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC022350|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##AF165967|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF152350|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF150087|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC000711|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK312169|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK025397|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC105986|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC106067|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##NM_012459|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF380360|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##AY044641|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##AY266351|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##D49950|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##BC007007|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##AK311301|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##BC007461|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##NM_001243211|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##NM_001562|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##BC029506|TEX12|56158|testis expressed 12##NM_031275|TEX12|56158|testis expressed 12##AF285600|TEX12|56158|testis expressed 12##NM_031938|BCO2|83875|beta-carotene oxygenase 2##AK315300|BCO2|83875|beta-carotene oxygenase 2##BC041656|BCO2|83875|beta-carotene oxygenase 2##BC047934|BCO2|83875|beta-carotene oxygenase 2##AK091783|BCO2|83875|beta-carotene oxygenase 2##AJ290393|BCO2|83875|beta-carotene oxygenase 2##AF276432|BCO2|83875|beta-carotene oxygenase 2	0.630873	0.757444	CTCF.p2:-49:0.757
chr18	6005050	6005133	reg1001789.p2	4.682	+	NM_001080209	-112989	-	TSC_hg19_v1_chr18_-_5630663 BC008377	-374444	-	AF069072 AB023204 NM_012307 TSC_hg19_v1_chr18_-_5543997 AK128531	-461103	-	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	409824	-	NM_001243517	506323	+	NM_001010000 BX648684 AK308259 AK302026	829374	+	NM_001080209|TMEM200C|645369|transmembrane protein 200C##BC008377|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AF069072|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AB023204|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##NM_012307|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##AK128531|EPB41L3|23136|erythrocyte membrane protein band 4.1-like 3##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28	1.997611	0.0	denovo_WM_7:-71:0.243	denovo_WM_7:-72:0.740
chr2	101681342	101681486	reg1009972.p2	4.682	+	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-62692	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-244648	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	-501978	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	86369	-	TSC_hg19_v1_chr2_+_101869347 NM_017546	187923	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	187978	+	NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29	0.0	0.0	
chr14	93571734	93571870	reg1007150.p1	4.681	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-182205	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	-182358	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	-311116	+	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	9789	-	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	10412	-	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	79398	-	AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1	0.999078	0.0	denovo_WM_7:73:0.314	denovo_WM_7:74:0.314	denovo_WM_7:75:0.314
chr19	15921109	15921212	reg1009925.p1	4.681	+	HQ258605 BC130360 BC132969 NM_013940	-2269	-	BC136869 AB529278 NM_001004466	-16351	+	AB529277 BC106707 BC113844 NM_013938	-68959	+	BC067437 BC067438 BC067439 BC067440 D26480 AK313705 U02388 AK300961 TSC_hg19_v1_chr19_-_16008885 AK290790 AK296200 NM_001082	87717	-	TSC_hg19_v1_chr19_-_16045678 BC016853 NM_001128932 NM_021187	124513	-	NM_001004465	138657	+	HQ258605|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##BC130360|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##BC132969|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##NM_013940|OR10H1|26539|olfactory receptor, family 10, subfamily H, member 1##BC136869|OR10H5|284433|olfactory receptor, family 10, subfamily H, member 5##NM_001004466|OR10H5|284433|olfactory receptor, family 10, subfamily H, member 5##BC106707|OR10H3|26532|olfactory receptor, family 10, subfamily H, member 3##BC113844|OR10H3|26532|olfactory receptor, family 10, subfamily H, member 3##NM_013938|OR10H3|26532|olfactory receptor, family 10, subfamily H, member 3##BC067437|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC067438|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC067439|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC067440|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##D26480|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK313705|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##U02388|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK300961|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK290790|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##AK296200|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##NM_001082|CYP4F2|8529|cytochrome P450, family 4, subfamily F, polypeptide 2##BC016853|CYP4F11|57834|cytochrome P450, family 4, subfamily F, polypeptide 11##NM_001128932|CYP4F11|57834|cytochrome P450, family 4, subfamily F, polypeptide 11##NM_021187|CYP4F11|57834|cytochrome P450, family 4, subfamily F, polypeptide 11##NM_001004465|OR10H4|126541|olfactory receptor, family 10, subfamily H, member 4	0.998156	0.0	
chr6	157992666	157992846	reg1010269.p2	4.681	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-190217	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-247539	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-248172	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	251533	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	251618	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	410131	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.996121	0.0	
chr6_apd_hap1	3468191	3468296	reg1011443.p1	4.681	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.008085	0.0	denovo_WM_7:-23:0.621	denovo_WM_7:-24:0.297
chr10	103668268	103668371	reg1008267.p1	4.680	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-64712	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-68707	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-90101	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	147593	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	156823	+	AK300588 TSC_hg19_v1_chr10_-_103874641	206300	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.073327	0.021528	
chr2	112194023	112194195	reg1014351.p1	4.680	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	-315622	+	AK300513 NM_001142807 BC022268	-703930	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-758287	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	447517	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	447652	-	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	462076	+	AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase	0.593522	0.0	denovo_WM_7:-43:0.341	denovo_WM_7:-44:0.220
chr6	30806284	30806391	reg1011004.p1	4.680	+	AF039067 BT006703 AB591006 AF083421 Y14551 BC000844 BC005080 S81914 TSC_hg19_v1_chr6_-_30712325 AK222588 AK314162 NM_003897	-94026	-	TSC_hg19_v1_chr6_-_30710463 AF085357 AF089750 AF117234 NM_005803 AK301291 AK000816 AK222530	-95889	-	BC001896 TSC_hg19_v1_chr6_+_30691264 DQ457058 BC029323 BC015889	-115076	+	AK291621 TSC_hg19_v1_chr6_+_30850729	44376	+	BC008716 BC013400 NM_001954	45523	+	NM_013993 L20817 L57508 TSC_hg19_v1_chr6_+_30852354 BC070070 AB210021 L11315	46048	+	AF039067|IER3|8870|immediate early response 3##BT006703|IER3|8870|immediate early response 3##AF083421|IER3|8870|immediate early response 3##Y14551|IER3|8870|immediate early response 3##BC000844|IER3|8870|immediate early response 3##BC005080|IER3|8870|immediate early response 3##S81914|IER3|8870|immediate early response 3##AK222588|IER3|8870|immediate early response 3##AK314162|IER3|8870|immediate early response 3##NM_003897|IER3|8870|immediate early response 3##AF085357|FLOT1|10211|flotillin 1##AF089750|FLOT1|10211|flotillin 1##AF117234|FLOT1|10211|flotillin 1##NM_005803|FLOT1|10211|flotillin 1##AK301291|FLOT1|10211|flotillin 1##AK000816|FLOT1|10211|flotillin 1##AK222530|FLOT1|10211|flotillin 1##BC001896|TUBB|203068|tubulin, beta class I##DQ457058|TUBB|203068|tubulin, beta class I##BC029323|TUBB|203068|tubulin, beta class I##BC015889|TUBB|203068|tubulin, beta class I##AK291621|DDR1|780|discoidin domain receptor tyrosine kinase 1##BC008716|DDR1|780|discoidin domain receptor tyrosine kinase 1##BC013400|DDR1|780|discoidin domain receptor tyrosine kinase 1##NM_001954|DDR1|780|discoidin domain receptor tyrosine kinase 1##NM_013993|DDR1|780|discoidin domain receptor tyrosine kinase 1##L20817|DDR1|780|discoidin domain receptor tyrosine kinase 1##L57508|DDR1|780|discoidin domain receptor tyrosine kinase 1##BC070070|DDR1|780|discoidin domain receptor tyrosine kinase 1##AB210021|DDR1|780|discoidin domain receptor tyrosine kinase 1##L11315|DDR1|780|discoidin domain receptor tyrosine kinase 1	0.994572	0.0	
chrX	1626599	1626779	reg1009894.p1	4.680	+	AK301844 NM_001173473	-54038	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-54888	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-115720	-	BC043610 GQ280263 NM_178129 AK126147	29349	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	83840	+	NM_004043 U11090	87658	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.0	0.0	
chr1	222807887	222808063	reg1013087.p2	4.679	+	TSC_hg19_v1_chr1_+_222791438 NM_198551 AK307412 AY359091 DQ166034	-16575	+	L39060 AK001054 AK290970 TSC_hg19_v1_chr1_-_222763247 BC013808 AK315740 AK299536 NM_001201536 NM_005681 NM_139352	-44798	-	AY358602 BC007638 BC016552 NM_024746	-86541	-	TSC_hg19_v1_chr1_+_222817647 AK296712 AX775845	9677	+	AL833718 TSC_hg19_v1_chr1_-_222885817 BC015535 BC067805 AK289865 AK022868 BC171848 NM_022831	77787	-	TSC_hg19_v1_chr1_+_222885905 AK056983 NM_144695	77927	+	NM_198551|MIA3|375056|melanoma inhibitory activity family, member 3##AK307412|MIA3|375056|melanoma inhibitory activity family, member 3##AY359091|MIA3|375056|melanoma inhibitory activity family, member 3##DQ166034|MIA3|375056|melanoma inhibitory activity family, member 3##L39060|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK001054|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK290970|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##BC013808|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK315740|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK299536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_001201536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_005681|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_139352|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AY358602|HHIPL2|79802|HHIP-like 2##BC007638|HHIPL2|79802|HHIP-like 2##BC016552|HHIPL2|79802|HHIP-like 2##NM_024746|HHIPL2|79802|HHIP-like 2##AK296712|MIA3|375056|melanoma inhibitory activity family, member 3##AL833718|AIDA|64853|axin interactor, dorsalization associated##BC015535|AIDA|64853|axin interactor, dorsalization associated##BC067805|AIDA|64853|axin interactor, dorsalization associated##AK289865|AIDA|64853|axin interactor, dorsalization associated##AK022868|AIDA|64853|axin interactor, dorsalization associated##BC171848|AIDA|64853|axin interactor, dorsalization associated##NM_022831|AIDA|64853|axin interactor, dorsalization associated##AK056983|BROX|148362|BRO1 domain and CAAX motif containing##NM_144695|BROX|148362|BRO1 domain and CAAX motif containing	0.0	0.839068	CTCF.p2:-27:0.839
chr3	173266239	173266360	reg1012837.p1	4.679	+	BC032555 NM_014932	-150056	+	BC034496 AF345909 AF404758 AK093041 AX747878 NM_031955	-407291	-	BC112086 AK023267 NM_018098 AB528037 DQ847274 TSC_hg19_v1_chr3_+_172472359	-793997	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	892421	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	1310791	+	TSC_hg19_v1_chr3_-_176914267 BX648935	3647951	-	BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BC034496|SPATA16|83893|spermatogenesis associated 16##AF345909|SPATA16|83893|spermatogenesis associated 16##AF404758|SPATA16|83893|spermatogenesis associated 16##AK093041|SPATA16|83893|spermatogenesis associated 16##NM_031955|SPATA16|83893|spermatogenesis associated 16##BC112086|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK023267|ECT2|1894|epithelial cell transforming sequence 2 oncogene##NM_018098|ECT2|1894|epithelial cell transforming sequence 2 oncogene##DQ847274|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.999398	0.0	denovo_WM_7:-19:0.805
chr7	35730391	35730488	reg1009905.p1	4.679	+	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	-436709	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	-504647	-	DQ287932 NM_015283	-652787	-	TSC_hg19_v1_chr7_-_35734533 BC005091	4157	-	BC020264 TSC_hg19_v1_chr7_-_35734751 AK055708	4300	-	TSC_hg19_v1_chr7_-_35734795 NM_022373	4339	-	NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC005091|HERPUD2|64224|HERPUD family member 2##BC020264|HERPUD2|64224|HERPUD family member 2##AK055708|HERPUD2|64224|HERPUD family member 2##NM_022373|HERPUD2|64224|HERPUD family member 2	0.993767	0.0	denovo_WM_7:-12:0.859
chr10	98100018	98100114	reg1003253.p1	4.678	+	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	-35898	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-68823	-	BC109045 BC109046 TSC_hg19_v1_chr10_+_97889812 AK095317 BC030967	-210324	+	AF367761 NM_001040102 NM_001040103 NM_033207	19008	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	173497	-	AK075451 TSC_hg19_v1_chr10_-_98290333	190271	-	NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC109045|ZNF518A|9849|zinc finger protein 518A##BC109046|ZNF518A|9849|zinc finger protein 518A##BC030967|ZNF518A|9849|zinc finger protein 518A##AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2##AK075451|TM9SF3|56889|transmembrane 9 superfamily member 3	2.950666	0.0	denovo_WM_7:12:0.250	denovo_WM_7:14:0.624	denovo_WM_7:62:0.913
chr11	32091526	32091632	reg1001034.p2	4.678	+	AB593092 AK314470 NM_001127612 TSC_hg19_v1_chr11_-_31839510	-252101	-	AB209177 TSC_hg19_v1_chr11_-_31832871 BX640762 NM_000280 NM_001604	-258710	-	BC011953 TSC_hg19_v1_chr11_-_31832790	-258792	-	TSC_hg19_v1_chr11_+_32112495 AK129791 NM_002901	20898	+	BC010120 TSC_hg19_v1_chr11_+_32112676 D42073 CU679627 DQ892928 DQ896177	21120	+	AK093168 BC032861 NM_001198551 NM_001198552	360781	-	AB593092|PAX6|5080|paired box 6##AK314470|PAX6|5080|paired box 6##NM_001127612|PAX6|5080|paired box 6##AB209177|PAX6|5080|paired box 6##BX640762|PAX6|5080|paired box 6##NM_000280|PAX6|5080|paired box 6##NM_001604|PAX6|5080|paired box 6##BC011953|PAX6|5080|paired box 6##AK129791|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##NM_002901|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##BC010120|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##D42073|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ892928|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ896177|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##AK093168|WT1|7490|Wilms tumor 1##BC032861|WT1|7490|Wilms tumor 1##NM_001198551|WT1|7490|Wilms tumor 1##NM_001198552|WT1|7490|Wilms tumor 1	0.972513	0.0	
chr1	76736194	76736298	reg1008181.p1	4.678	+	TSC_hg19_v1_chr1_+_76540430 NM_001160011 NM_152996 AK091215 AX746855 BC059363 AK297363 AY358540 AJ507291 CU691350	-195784	+	AF403035 CU691378 BC022517 AF429968 BC036573 AK098606 NM_080868	-338201	-	NM_002440 BC033030 U89293 AF104243 AB528458 CU689598 DQ891259 DQ894445	-473634	+	TSC_hg19_v1_chr1_+_77165439 D28460	429194	+	TSC_hg19_v1_chr1_+_77333125 AK056241	596881	+	TSC_hg19_v1_chr1_+_77333164 AK095758 AK300902 AK295019 BC001201 NM_030965	596925	+	NM_001160011|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##NM_152996|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AK091215|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##BC059363|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AK297363|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AY358540|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AJ507291|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AF403035|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC022517|ASB17|127247|ankyrin repeat and SOCS box containing 17##AF429968|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC036573|ASB17|127247|ankyrin repeat and SOCS box containing 17##AK098606|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_080868|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_002440|MSH4|4438|mutS homolog 4 (E. coli)##BC033030|MSH4|4438|mutS homolog 4 (E. coli)##U89293|MSH4|4438|mutS homolog 4 (E. coli)##AF104243|MSH4|4438|mutS homolog 4 (E. coli)##DQ891259|MSH4|4438|mutS homolog 4 (E. coli)##DQ894445|MSH4|4438|mutS homolog 4 (E. coli)##D28460|TPI1|7167|triosephosphate isomerase 1##AK056241|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK095758|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK300902|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK295019|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##BC001201|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##NM_030965|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	0.998189	0.0	
chr2	42827344	42827474	reg1011666.p2	4.678	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-31512	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-31688	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-105707	+	AY158687 AB528920 AB083055 BC063549 NM_148962	163891	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	192342	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	625936	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.889381	0.0	denovo_WM_7:-62:0.311	denovo_WM_7:-63:0.205
chr5	10608292	10608388	reg1007677.p3	4.678	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-43898	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-166188	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-166337	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	152919	-	TSC_hg19_v1_chr5_-_10761341 BC002726	153002	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	153059	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.99083	0.0	denovo_WM_7:-21:0.330	denovo_WM_7:-22:0.330	denovo_WM_7:-23:0.330
chr3	182993333	182993446	reg1010049.p2	4.677	+	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-21783	+	AB209517 TSC_hg19_v1_chr3_+_182971343	-22111	+	TSC_hg19_v1_chr3_+_182970969 NM_032047 AK074424	-22441	+	NM_015078 BC064632 AK124500 AK310962	152550	-	TSC_hg19_v1_chr3_+_183165436 AK057000	172041	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	280063	-	AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AB209517|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##NM_032047|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK074424|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK057000|LOC100505687|100505687|uncharacterized LOC100505687##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)	0.997083	0.0	denovo_WM_7:8:0.620	denovo_WM_7:9:0.309
chr6	42714301	42714481	reg1000719.p2	4.677	+	TSC_hg19_v1_chr6_-_42713837 NM_003192	-516	-	TSC_hg19_v1_chr6_-_42713833 BC020170 AK312681 U61234	-563	-	TSC_hg19_v1_chr6_-_42713800 BT007002	-595	-	TSC_hg19_v1_chr6_-_42714549 BC017479	161	-	TSC_hg19_v1_chr6_+_42714735 D87077	352	+	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	35306	+	NM_003192|TBCC|6903|tubulin folding cofactor C##BC020170|TBCC|6903|tubulin folding cofactor C##AK312681|TBCC|6903|tubulin folding cofactor C##U61234|TBCC|6903|tubulin folding cofactor C##BT007002|TBCC|6903|tubulin folding cofactor C##BC017479|TBCC|6903|tubulin folding cofactor C##D87077|KIAA0240|23506|KIAA0240##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240	0.0	0.0	
chr9	6429097	6429243	reg1005240.p2	4.677	+	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-15765	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-15973	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	-16026	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	216457	-	AK310439 NM_001146696	291692	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	328497	+	AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C	0.99479	0.0	denovo_WM_7:4:0.585	denovo_WM_7:5:0.292
chr12	33741470	33741650	reg1012850.p1	4.676	+	BC101024 BC101025 TSC_hg19_v1_chr12_-_33592705 AY198413 NM_198992	-148894	-	EU520483 EU520484 EU520485 EU520486 AB590796 HQ258660 TSC_hg19_v1_chr12_-_33049733 X97675 BC094762 BC126199 BC143966 BC143967 BC070083 NM_001005242 NM_004572	-691825	-	AF132939 CU677373 DQ893063 DQ896315 BC015625 TSC_hg19_v1_chr12_-_32908835 AK024057 AK026619 AK130935 NM_001040436	-832719	-	AJ312278 NM_032834	433655	+	TSC_hg19_v1_chr12_+_34175402 BC022336	433826	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	433913	+	BC101024|SYT10|341359|synaptotagmin X##BC101025|SYT10|341359|synaptotagmin X##AY198413|SYT10|341359|synaptotagmin X##NM_198992|SYT10|341359|synaptotagmin X##EU520483|PKP2|5318|plakophilin 2##EU520484|PKP2|5318|plakophilin 2##EU520485|PKP2|5318|plakophilin 2##EU520486|PKP2|5318|plakophilin 2##HQ258660|PKP2|5318|plakophilin 2##X97675|PKP2|5318|plakophilin 2##BC094762|PKP2|5318|plakophilin 2##BC126199|PKP2|5318|plakophilin 2##BC143966|PKP2|5318|plakophilin 2##BC143967|PKP2|5318|plakophilin 2##BC070083|PKP2|5318|plakophilin 2##NM_001005242|PKP2|5318|plakophilin 2##NM_004572|PKP2|5318|plakophilin 2##AF132939|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##DQ893063|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##DQ896315|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##BC015625|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK024057|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK026619|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AK130935|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##NM_001040436|YARS2|51067|tyrosyl-tRNA synthetase 2, mitochondrial##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)	0.994122	0.0	denovo_WM_7:65:0.824
chr13	100084194	100084348	reg1011296.p1	4.676	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-124573	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-173657	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-231152	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	69429	+	TSC_hg19_v1_chr13_+_100153777 BC130293	69511	+	BC041830 TSC_hg19_v1_chr13_+_100229390	145106	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	1.156438	0.0	
chr13	21243490	21243591	reg1010316.p1	4.676	+	TSC_hg19_v1_chr13_+_21183940 BC039413	-59563	+	TSC_hg19_v1_chr13_+_21141298 AK300769 AK310223 AK308281 AK303853 BC059357	-102234	+	NM_006531 NM_175605 U20362 TSC_hg19_v1_chr13_+_21141275 BC030776	-102299	+	AY078238 BC036243 NM_138284 AF458062	33972	+	TSC_hg19_v1_chr13_-_21295740 L23206	52271	-	DQ823637 BC018091 NM_174928 TSC_hg19_v1_chr13_-_21348079	104526	-	AK300769|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##AK310223|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##AK308281|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##AK303853|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##BC059357|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##NM_006531|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##NM_175605|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##U20362|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##BC030776|IFT88|8100|intraflagellar transport 88 homolog (Chlamydomonas)##AY078238|IL17D|53342|interleukin 17D##BC036243|IL17D|53342|interleukin 17D##NM_138284|IL17D|53342|interleukin 17D##AF458062|IL17D|53342|interleukin 17D##DQ823637|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##BC018091|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)##NM_174928|N6AMT2|221143|N-6 adenine-specific DNA methyltransferase 2 (putative)	0.996841	0.0	denovo_WM_7:31:0.975
chr13	28975800	28975927	reg1008635.p1	4.676	+	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	-263197	+	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	-301176	-	NM_001105577	-413090	-	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	93381	-	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	257345	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	257431	+	AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##NM_001105577|PRHOXNB|646625|parahox cluster neighbor##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein	0.0	0.0	
chr2	61064444	61064535	reg1010321.p1	4.676	+	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	-81005	+	AF080216 TSC_hg19_v1_chr2_-_60780784	-283711	-	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	-283967	-	TSC_hg19_v1_chr2_+_61108702 AK303926	44216	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	44248	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	44298	+	NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)	0.10013	0.014044	
chr5	83555627	83555758	reg1013571.p1	4.676	+	AK313713 NM_001884 X17405 X78076 X78075	-538758	-	NM_001126336 NM_001164097 NM_001164098 NM_004385 TSC_hg19_v1_chr5_+_82767562 U16306 U26555 X15998 AK307642 AB209491 BC050524 D32039	-788075	+	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	-1182309	+	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	124554	-	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	124972	-	TSC_hg19_v1_chr5_+_85913757 AK026505	2358066	+	AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001126336|VCAN|1462|versican##NM_001164097|VCAN|1462|versican##NM_001164098|VCAN|1462|versican##NM_004385|VCAN|1462|versican##U16306|VCAN|1462|versican##U26555|VCAN|1462|versican##X15998|VCAN|1462|versican##AK307642|VCAN|1462|versican##AB209491|VCAN|1462|versican##BC050524|VCAN|1462|versican##D32039|VCAN|1462|versican##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc	0.099659	0.0	
chr6	3251809	3251931	reg1009475.p1	4.676	+	BT019930 CR456788 CU674662 BC063610 TSC_hg19_v1_chr6_-_3227888 AK308806 AK289433 AK297568 BC001352 NM_178012	-23999	-	AY159127 CR541958 CU674602 AB528583 DQ892343 DQ895718 BC001194 TSC_hg19_v1_chr6_-_3157779 BC018780 X79535 AK308772 AK312621 NM_001069	-94124	-	TSC_hg19_v1_chr6_+_3118961 AK297518 NM_004332 AK314909 AL832502 AJ617684 X81372	-132919	+	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	7288	+	TSC_hg19_v1_chr6_+_3259232 AK126623 AK095683	7369	+	TSC_hg19_v1_chr6_-_3272352 BC090851 BC022217	20560	-	BT019930|TUBB2B|347733|tubulin, beta 2B class IIb##CR456788|TUBB2B|347733|tubulin, beta 2B class IIb##BC063610|TUBB2B|347733|tubulin, beta 2B class IIb##AK308806|TUBB2B|347733|tubulin, beta 2B class IIb##AK289433|TUBB2B|347733|tubulin, beta 2B class IIb##AK297568|TUBB2B|347733|tubulin, beta 2B class IIb##BC001352|TUBB2B|347733|tubulin, beta 2B class IIb##NM_178012|TUBB2B|347733|tubulin, beta 2B class IIb##AY159127|TUBB2A|7280|tubulin, beta 2A class IIa##CR541958|TUBB2A|7280|tubulin, beta 2A class IIa##DQ892343|TUBB2A|7280|tubulin, beta 2A class IIa##DQ895718|TUBB2A|7280|tubulin, beta 2A class IIa##BC001194|TUBB2A|7280|tubulin, beta 2A class IIa##BC018780|TUBB2A|7280|tubulin, beta 2A class IIa##X79535|TUBB2A|7280|tubulin, beta 2A class IIa##AK312621|TUBB2A|7280|tubulin, beta 2A class IIa##NM_001069|TUBB2A|7280|tubulin, beta 2A class IIa##AK297518|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##NM_004332|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AK314909|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AL832502|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AJ617684|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##X81372|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK126623|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK095683|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##BC090851|SLC22A23|63027|solute carrier family 22, member 23##BC022217|SLC22A23|63027|solute carrier family 22, member 23	0.0	0.793627	CTCF.p2:-1:0.794
chr10	11238513	11238667	reg1007826.p2	4.675	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-31098	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-31144	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-31165	+	NM_001080491	335683	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	415046	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	545808	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	0.873602	0.0	denovo_WM_7:29:0.221	denovo_WM_7:30:0.233	denovo_WM_7:31:0.354
chr16	89454518	89454698	reg1011386.p1	4.675	+	AK293862 NM_001242885	-67068	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-103652	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-104534	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	102323	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	120206	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	172457	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.74766	0.0	
chr17_ctg5_hap1	1372672	1372819	reg1011905.p1	4.675	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr16	16687438	16687571	reg1011983.p1	4.674	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-360974	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-361016	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-361022	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	877301	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1885887	-	TSC_hg19_v1_chr16_-_18798077 AK127316	2110592	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.0	0.379954	CTCF.p2:-28:0.380
chr17	60120579	60120704	reg1013949.p2	4.674	+	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	-115299	-	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-179847	-	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	-452079	-	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	21986	-	NM_001144933	326937	+	AK098684 NM_173503 BC101752 BC101778	337285	+	AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3	1.348674	0.0	denovo_WM_7:-81:0.337
chr19	2148315	2148399	reg1006346.p2	4.674	+	TSC_hg19_v1_chr19_+_2096982 CU677067 DQ424900 AK294083	-51394	+	TSC_hg19_v1_chr19_+_2096913 AY358444 NM_001031735 NM_001039846 DQ196309 DQ196310 AK301957 AY753639 BC014609 BC040964 BC010443	-51497	+	TSC_hg19_v1_chr19_-_2096297 AL832474	-52063	-	CU679595 AB384738 BC005142 TSC_hg19_v1_chr19_-_2151519	3068	-	BC010065 TSC_hg19_v1_chr19_-_2151549 U91930 AB208804	3185	-	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	3196	-	DQ424900|IZUMO4|113177|IZUMO family member 4##AK294083|IZUMO4|113177|IZUMO family member 4##AY358444|IZUMO4|113177|IZUMO family member 4##NM_001031735|IZUMO4|113177|IZUMO family member 4##NM_001039846|IZUMO4|113177|IZUMO family member 4##DQ196309|IZUMO4|113177|IZUMO family member 4##DQ196310|IZUMO4|113177|IZUMO family member 4##AK301957|IZUMO4|113177|IZUMO family member 4##AY753639|IZUMO4|113177|IZUMO family member 4##BC014609|IZUMO4|113177|IZUMO family member 4##BC040964|IZUMO4|113177|IZUMO family member 4##BC010443|IZUMO4|113177|IZUMO family member 4##AL832474|MOB3A|126308|MOB kinase activator 3A##BC005142|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC010065|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##U91930|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##AB208804|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit	0.0	0.0	
chr2	128215845	128215945	reg1010310.p1	4.674	+	TSC_hg19_v1_chr2_+_128176019 BC034377	-39869	+	TSC_hg19_v1_chr2_+_128176007 NM_000312 AK298449 AK303773 AK298280 AK298454 X02750	-39893	+	AF234262 AF239798 BC136293 AF111105 NM_006609	-115157	-	BC065279 BC110536 BC110537 TSC_hg19_v1_chr2_-_128284054 AK000868 AL834178 AK296848 AK027561 AK295970 AK309006 AK056881 AK294669 NM_017969	68070	-	TSC_hg19_v1_chr2_+_128293312 NM_001080527	77449	+	NM_001161415 NM_001161416 NM_001161417 NM_005291 AK292725 BX538082 BC013202 Z94154 Y12546 BC031653	187703	+	BC034377|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##NM_000312|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##AK298449|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##AK303773|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##AK298280|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##AK298454|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##X02750|PROC|5624|protein C (inactivator of coagulation factors Va and VIIIa)##AF239798|MAP3K2|10746|mitogen-activated protein kinase kinase kinase 2##BC136293|MAP3K2|10746|mitogen-activated protein kinase kinase kinase 2##AF111105|MAP3K2|10746|mitogen-activated protein kinase kinase kinase 2##NM_006609|MAP3K2|10746|mitogen-activated protein kinase kinase kinase 2##BC065279|IWS1|55677|IWS1 homolog (S. cerevisiae)##BC110536|IWS1|55677|IWS1 homolog (S. cerevisiae)##BC110537|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK000868|IWS1|55677|IWS1 homolog (S. cerevisiae)##AL834178|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK296848|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK027561|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK295970|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK309006|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK056881|IWS1|55677|IWS1 homolog (S. cerevisiae)##AK294669|IWS1|55677|IWS1 homolog (S. cerevisiae)##NM_017969|IWS1|55677|IWS1 homolog (S. cerevisiae)##NM_001080527|MYO7B|4648|myosin VIIB##NM_001161415|GPR17|2840|G protein-coupled receptor 17##NM_001161416|GPR17|2840|G protein-coupled receptor 17##NM_001161417|GPR17|2840|G protein-coupled receptor 17##NM_005291|GPR17|2840|G protein-coupled receptor 17##AK292725|GPR17|2840|G protein-coupled receptor 17##BX538082|GPR17|2840|G protein-coupled receptor 17##BC013202|GPR17|2840|G protein-coupled receptor 17##Z94154|GPR17|2840|G protein-coupled receptor 17##Y12546|GPR17|2840|G protein-coupled receptor 17##BC031653|GPR17|2840|G protein-coupled receptor 17	1.527782	0.0	denovo_WM_7:-33:0.679	denovo_WM_7:47:0.338	denovo_WM_7:48:0.246
chr22	29804993	29805117	reg1013153.p1	4.674	+	TSC_hg19_v1_chr22_-_29784570 BC046242 NM_001127 NM_001166019 NM_145730	-20463	-	L13939 TSC_hg19_v1_chr22_-_29784436	-20618	-	TSC_hg19_v1_chr22_-_29711687 BC058077 BC050739 BC022473 NM_001007279 NM_006477	-93357	-	AJ010228 AJ010229 NM_021026	29516	+	AK302660 NM_021076 TSC_hg19_v1_chr22_+_29876208 BC073969 AF203032	71160	+	NM_001002878 NM_001002879 BC003615 TSC_hg19_v1_chr22_-_29949699 AK025385 AB023200 AK225752 NM_001002877 NM_003678	144642	-	BC046242|AP1B1|162|adaptor-related protein complex 1, beta 1 subunit##NM_001127|AP1B1|162|adaptor-related protein complex 1, beta 1 subunit##NM_001166019|AP1B1|162|adaptor-related protein complex 1, beta 1 subunit##NM_145730|AP1B1|162|adaptor-related protein complex 1, beta 1 subunit##L13939|AP1B1|162|adaptor-related protein complex 1, beta 1 subunit##BC058077|RASL10A|10633|RAS-like, family 10, member A##BC050739|RASL10A|10633|RAS-like, family 10, member A##BC022473|RASL10A|10633|RAS-like, family 10, member A##NM_001007279|RASL10A|10633|RAS-like, family 10, member A##NM_006477|RASL10A|10633|RAS-like, family 10, member A##AJ010228|RFPL1|5988|ret finger protein-like 1##AJ010229|RFPL1|5988|ret finger protein-like 1##NM_021026|RFPL1|5988|ret finger protein-like 1##AK302660|NEFH|4744|neurofilament, heavy polypeptide##NM_021076|NEFH|4744|neurofilament, heavy polypeptide##BC073969|NEFH|4744|neurofilament, heavy polypeptide##AF203032|NEFH|4744|neurofilament, heavy polypeptide##NM_001002878|THOC5|8563|THO complex 5##NM_001002879|THOC5|8563|THO complex 5##BC003615|THOC5|8563|THO complex 5##AK025385|THOC5|8563|THO complex 5##AB023200|THOC5|8563|THO complex 5##AK225752|THOC5|8563|THO complex 5##NM_001002877|THOC5|8563|THO complex 5##NM_003678|THOC5|8563|THO complex 5	1.06123	0.0	denovo_WM_7:-50:0.943
chr7	130716324	130716428	reg1009096.p1	4.674	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-297449	-	AF294347 AF431815 BC038415 NM_052933	-345021	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-362781	-	TSC_hg19_v1_chr7_-_130792857 BC047367	76483	-	AK294384 NM_001145354	78478	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	296230	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	0.0	0.0	
chr9	35080551	35080731	reg1006657.p2	4.674	+	TSC_hg19_v1_chr9_-_35079753 BC011623 AK293427 AK312987 AJ007669 NM_004629	-760	-	BT009813 CU674000 AB464437 DQ892166 DQ895360 U70310 BC000032 TSC_hg19_v1_chr9_-_35079678 AK311348	-1037	-	TSC_hg19_v1_chr9_-_35072646 NM_007126	-7951	-	NM_001201484 NM_032634 AK090433 TSC_hg19_v1_chr9_-_35096578 AK074064 NM_152850	15959	-	TSC_hg19_v1_chr9_-_35103065 AF161458	22423	-	TSC_hg19_v1_chr9_-_35103124 CU677964 DQ895920 DQ892677 BC003025 AK130546 AK308552 BC014990 AF282596 AK027405 AK225114 BC010152 AK307343 BC002442 AK303883 AK223102	22475	-	BC011623|FANCG|2189|Fanconi anemia, complementation group G##AK293427|FANCG|2189|Fanconi anemia, complementation group G##AK312987|FANCG|2189|Fanconi anemia, complementation group G##AJ007669|FANCG|2189|Fanconi anemia, complementation group G##NM_004629|FANCG|2189|Fanconi anemia, complementation group G##BT009813|FANCG|2189|Fanconi anemia, complementation group G##DQ892166|FANCG|2189|Fanconi anemia, complementation group G##DQ895360|FANCG|2189|Fanconi anemia, complementation group G##U70310|FANCG|2189|Fanconi anemia, complementation group G##BC000032|FANCG|2189|Fanconi anemia, complementation group G##AK311348|FANCG|2189|Fanconi anemia, complementation group G##NM_007126|VCP|7415|valosin containing protein##NM_001201484|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##NM_032634|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AK090433|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AK074064|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##NM_152850|PIGO|84720|phosphatidylinositol glycan anchor biosynthesis, class O##AF161458|STOML2|30968|stomatin (EPB72)-like 2##DQ895920|STOML2|30968|stomatin (EPB72)-like 2##DQ892677|STOML2|30968|stomatin (EPB72)-like 2##BC003025|STOML2|30968|stomatin (EPB72)-like 2##AK130546|STOML2|30968|stomatin (EPB72)-like 2##BC014990|STOML2|30968|stomatin (EPB72)-like 2##AF282596|STOML2|30968|stomatin (EPB72)-like 2##AK027405|STOML2|30968|stomatin (EPB72)-like 2##AK225114|STOML2|30968|stomatin (EPB72)-like 2##BC010152|STOML2|30968|stomatin (EPB72)-like 2##AK307343|STOML2|30968|stomatin (EPB72)-like 2##BC002442|STOML2|30968|stomatin (EPB72)-like 2##AK303883|STOML2|30968|stomatin (EPB72)-like 2##AK223102|STOML2|30968|stomatin (EPB72)-like 2	0.996918	0.0	denovo_WM_7:4:0.438	denovo_WM_7:5:0.438
chr10	6114600	6114766	reg1010000.p2	4.673	+	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	-10461	-	AF035279 BC107777 BC065506 NM_001243539	-94669	-	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	-95170	-	TSC_hg19_v1_chr10_+_6130954 NM_032905	16266	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	16316	+	TSC_hg19_v1_chr10_+_6131035 BC007871 BC039322 NM_001145547	16488	+	AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha##AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##NM_032905|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17##BC007871|RBM17|84991|RNA binding motif protein 17##BC039322|RBM17|84991|RNA binding motif protein 17##NM_001145547|RBM17|84991|RNA binding motif protein 17	0.0	0.0	
chr15	41046359	41046472	reg1002129.p2	4.673	+	TSC_hg19_v1_chr15_+_40987387 D14134 D13804	-58999	+	EU362635 NM_001164270 NM_002875 NM_133487 TSC_hg19_v1_chr15_+_40987377 BC001459 AK291969 AK303089 AK313503 AK131299 NM_001164269	-59064	+	TSC_hg19_v1_chr15_-_40987295 AK125393	-59120	-	BC063844 TSC_hg19_v1_chr15_-_41047430 AK097286 AK092058	1018	-	TSC_hg19_v1_chr15_-_41047453 AK001441 NM_018145 AK123192	1049	-	TSC_hg19_v1_chr15_+_41056274 AK223430 AK311872 NM_005258 BC112262 BC112264 BC143904 HQ258032	9893	+	D14134|RAD51|5888|RAD51 homolog (S. cerevisiae)##D13804|RAD51|5888|RAD51 homolog (S. cerevisiae)##EU362635|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164270|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_002875|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_133487|RAD51|5888|RAD51 homolog (S. cerevisiae)##BC001459|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK291969|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK303089|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK313503|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK131299|RAD51|5888|RAD51 homolog (S. cerevisiae)##NM_001164269|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK125393|LOC100505648|100505648|uncharacterized LOC100505648##BC063844|FAM82A2|55177|family with sequence similarity 82, member A2##AK097286|FAM82A2|55177|family with sequence similarity 82, member A2##AK092058|FAM82A2|55177|family with sequence similarity 82, member A2##AK001441|FAM82A2|55177|family with sequence similarity 82, member A2##NM_018145|FAM82A2|55177|family with sequence similarity 82, member A2##AK123192|FAM82A2|55177|family with sequence similarity 82, member A2##AK223430|GCHFR|2644|GTP cyclohydrolase I feedback regulator##AK311872|GCHFR|2644|GTP cyclohydrolase I feedback regulator##NM_005258|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112262|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112264|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC143904|GCHFR|2644|GTP cyclohydrolase I feedback regulator##HQ258032|GCHFR|2644|GTP cyclohydrolase I feedback regulator	0.999537	0.0	
chr6	26176169	26176286	reg1010212.p2	4.673	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-17863	+	NM_005321 TSC_hg19_v1_chr6_+_26156558 BC096168 BC096169 BC096170 BC099632 EF065554 EF065555	-19629	+	TSC_hg19_v1_chr6_+_26156555 BC055095 AK313681	-19673	+	BC101748 BC101750 EU446967 NM_003523	7763	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	13095	-	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	21269	-	NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##NM_005321|HIST1H1E|3008|histone cluster 1, H1e##BC096168|HIST1H1E|3008|histone cluster 1, H1e##BC096169|HIST1H1E|3008|histone cluster 1, H1e##BC096170|HIST1H1E|3008|histone cluster 1, H1e##BC099632|HIST1H1E|3008|histone cluster 1, H1e##EF065554|HIST1H1E|3008|histone cluster 1, H1e##EF065555|HIST1H1E|3008|histone cluster 1, H1e##AK313681|HIST1H1E|3008|histone cluster 1, H1e##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d	0.94355	0.0	denovo_WM_7:19:0.693
chr19	34744867	34744958	reg1010190.p1	4.672	+	TSC_hg19_v1_chr19_+_34710343 AL117499	-34532	+	TSC_hg19_v1_chr19_+_34663440 AL834398 AK027643 AB069974 AB069975	-81444	+	TSC_hg19_v1_chr19_+_34663429 AK300208	-81486	+	TSC_hg19_v1_chr19_+_34745535 NM_014686 AB002353 BX648432	598	+	TSC_hg19_v1_chr19_+_34856083 NM_001184722 AK294396 NM_000175	110928	+	TSC_hg19_v1_chr19_+_34856150 AB209575 AK301103	111226	+	AL117499|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AL834398|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK027643|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069974|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069975|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK300208|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##NM_014686|KIAA0355|9710|KIAA0355##AB002353|KIAA0355|9710|KIAA0355##NM_001184722|GPI|2821|glucose-6-phosphate isomerase##AK294396|GPI|2821|glucose-6-phosphate isomerase##NM_000175|GPI|2821|glucose-6-phosphate isomerase##AB209575|GPI|2821|glucose-6-phosphate isomerase##AK301103|GPI|2821|glucose-6-phosphate isomerase	0.987231	0.0	denovo_WM_7:-10:0.321	denovo_WM_7:-11:0.321	denovo_WM_7:-12:0.321
chr19	55787479	55787581	reg1008478.p2	4.672	+	TSC_hg19_v1_chr19_-_55770366 AB029038	-17174	-	TSC_hg19_v1_chr19_-_55769920 NM_014931	-17552	-	TSC_hg19_v1_chr19_-_55769905 BC094753	-17656	-	TSC_hg19_v1_chr19_-_55791440 AF187859	3904	-	TSC_hg19_v1_chr19_-_55791484 BC002373 AB020592 AF093420 AK130781 AK075293	3937	-	TSC_hg19_v1_chr19_-_55791492 AK130636 AK129755	3987	-	AB029038|PPP6R1|22870|protein phosphatase 6, regulatory subunit 1##NM_014931|PPP6R1|22870|protein phosphatase 6, regulatory subunit 1##BC094753|PPP6R1|22870|protein phosphatase 6, regulatory subunit 1##AF187859|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##BC002373|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AB020592|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AF093420|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK130781|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK075293|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK130636|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK129755|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	0.998825	0.0	
chr2	133504711	133504825	reg1011683.p1	4.672	+	NM_001077427 AK309668	-75658	-	NM_144586	-76288	-	AY358628 BC017318 AK309849 AK075487 TSC_hg19_v1_chr2_-_133427783 AK130005 AK094501 AK123029	-77065	-	AK124659 TSC_hg19_v1_chr2_-_133539761	34926	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	674586	-	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	821270	-	NM_001077427|LYPD1|116372|LY6/PLAUR domain containing 1##AK309668|LYPD1|116372|LY6/PLAUR domain containing 1##NM_144586|LYPD1|116372|LY6/PLAUR domain containing 1##AY358628|LYPD1|116372|LY6/PLAUR domain containing 1##BC017318|LYPD1|116372|LY6/PLAUR domain containing 1##AK309849|LYPD1|116372|LY6/PLAUR domain containing 1##AK075487|LYPD1|116372|LY6/PLAUR domain containing 1##AK130005|LYPD1|116372|LY6/PLAUR domain containing 1##AK094501|LYPD1|116372|LY6/PLAUR domain containing 1##AK123029|LYPD1|116372|LY6/PLAUR domain containing 1##AK124659|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5	0.988566	0.0	denovo_WM_7:-15:0.835
chr2	179684965	179685074	reg1012326.p1	4.672	+	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	-12916	-	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	-25318	-	TSC_hg19_v1_chr2_+_179387947 AK093733	-297059	+	AL832777 NM_173648	229766	-	AY209190 TSC_hg19_v1_chr2_-_180129277 AK096232 NM_178123 BC047578	444386	-	AK057999 NM_001113398	742295	-	X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin##X98114|TTN|7273|titin##X98115|TTN|7273|titin##AK093733|LOC100506866|100506866|uncharacterized LOC100506866##AL832777|CCDC141|285025|coiled-coil domain containing 141##NM_173648|CCDC141|285025|coiled-coil domain containing 141##AY209190|SESTD1|91404|SEC14 and spectrin domains 1##AK096232|SESTD1|91404|SEC14 and spectrin domains 1##NM_178123|SESTD1|91404|SEC14 and spectrin domains 1##BC047578|SESTD1|91404|SEC14 and spectrin domains 1##AK057999|ZNF385B|151126|zinc finger protein 385B##NM_001113398|ZNF385B|151126|zinc finger protein 385B	0.0	0.0	
chr2	72431522	72431652	reg1002258.p1	4.672	+	TSC_hg19_v1_chr2_-_72374955 AF252297 AK294814 BC069443 BC109205 FJ467289 NM_019885 CU686818 AK313433	-56645	-	AK295683 TSC_hg19_v1_chr2_-_72371202	-60388	-	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	-737694	+	TSC_hg19_v1_chr2_-_73053163 AB384543 AB023136 NM_015189	621517	-	TSC_hg19_v1_chr2_+_73114529 NM_003124 AK222942 M76231 BC017310 AK291856 DQ891699 DQ894880	682943	+	BC045762 NM_004097 TSC_hg19_v1_chr2_+_73144689	713066	+	AF252297|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK294814|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC069443|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC109205|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##FJ467289|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_019885|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK313433|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AB023136|EXOC6B|23233|exocyst complex component 6B##NM_015189|EXOC6B|23233|exocyst complex component 6B##NM_003124|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK222942|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##M76231|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC017310|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##AK291856|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ891699|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##DQ894880|SPR|6697|sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase)##BC045762|EMX1|2016|empty spiracles homeobox 1##NM_004097|EMX1|2016|empty spiracles homeobox 1	0.989286	0.0	
chr3	129875700	129875807	reg1009645.p1	4.672	+	TSC_hg19_v1_chr3_-_129830331 BC071676	-45404	-	TSC_hg19_v1_chr3_-_129830276 BC083497	-45458	-	NM_001136152 BC127755	-75015	+	EU085556 NM_153264 AM906078	188665	+	AM774225 NM_001102608	403424	+	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	589850	-	NM_001136152|ALG1L2|644974|asparagine-linked glycosylation 1-like 2##EU085556|COL6A5|256076|collagen, type VI, alpha 5##NM_153264|COL6A5|256076|collagen, type VI, alpha 5##AM906078|COL6A5|256076|collagen, type VI, alpha 5##AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4	0.998523	0.0	denovo_WM_7:-45:0.442	denovo_WM_7:-46:0.442
chr8	141474518	141474647	reg1002630.p1	4.672	+	AK128755 NM_031466	-5905	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	-6724	-	AB067469 TSC_hg19_v1_chr8_-_141467841	-6757	-	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	46810	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	46981	+	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	171042	-	AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2	0.0	0.0	
chr3	98048454	98048573	reg1012059.p1	4.671	+	NM_001005482	-46782	+	BC137523 BC137524 NM_001005479	-65406	+	NM_001005515	-160970	+	NM_001005517	24184	+	NM_001005516	60996	+	BC136918 BC136919 NM_001004736	139858	+	NM_001005482|OR5H2|79310|olfactory receptor, family 5, subfamily H, member 2##BC137523|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##BC137524|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##NM_001005479|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##NM_001005515|OR5H15|403274|olfactory receptor, family 5, subfamily H, member 15##NM_001005517|OR5K4|403278|olfactory receptor, family 5, subfamily K, member 4##NM_001005516|OR5K3|403277|olfactory receptor, family 5, subfamily K, member 3##BC136918|OR5K1|26339|olfactory receptor, family 5, subfamily K, member 1##BC136919|OR5K1|26339|olfactory receptor, family 5, subfamily K, member 1##NM_001004736|OR5K1|26339|olfactory receptor, family 5, subfamily K, member 1	0.0	0.741047	CTCF.p2:55:0.741
chr11	68901851	68901971	reg1014493.p1	4.670	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-44385	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-85485	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-85561	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	159711	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	553945	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	553999	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	2.865406	0.0	denovo_WM_7:59:0.912	denovo_WM_7:75:0.958	denovo_WM_7:90:0.965
chr12	111000865	111000963	reg1006511.p2	4.670	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-60839	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-61004	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-94245	+	TSC_hg19_v1_chr12_-_111020755 AY357944	19879	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	20156	-	AK124744 TSC_hg19_v1_chr12_-_111021124	20212	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	1.908714	0.0	denovo_WM_7:21:0.518	denovo_WM_7:22:0.431	denovo_WM_7:37:0.850
chr12	42863273	42863453	reg1006788.p1	4.670	+	AK129910 AK303612 NM_001143787 NM_001143788 NM_001143789 NM_016488 NM_201438 NM_201439 NM_201440 NM_201515 TSC_hg19_v1_chr12_+_42719974 AY157850 AK055690 AK056622 AK299951 AY039238 AK303680 AF151066 AK308022 AK299682 BC015322 BC025306 BC039832 BC040449 AF151040 BC033753	-143385	+	AK308244 TSC_hg19_v1_chr12_-_42719921 BC005099 BC010177 BC022543 AB062361 NM_033114	-143488	-	NM_001190979 NM_001190980 NM_005748 TSC_hg19_v1_chr12_-_42632167	-231192	-	TSC_hg19_v1_chr12_-_42877418 AK122877 NM_001144881	14053	-	AK122881 TSC_hg19_v1_chr12_-_42877772	14395	-	TSC_hg19_v1_chr12_-_42877811 NM_001144882 NM_001144883	14436	-	AK129910|PPHLN1|51535|periphilin 1##AK303612|PPHLN1|51535|periphilin 1##NM_001143787|PPHLN1|51535|periphilin 1##NM_001143788|PPHLN1|51535|periphilin 1##NM_001143789|PPHLN1|51535|periphilin 1##NM_016488|PPHLN1|51535|periphilin 1##NM_201438|PPHLN1|51535|periphilin 1##NM_201439|PPHLN1|51535|periphilin 1##NM_201440|PPHLN1|51535|periphilin 1##NM_201515|PPHLN1|51535|periphilin 1##AY157850|PPHLN1|51535|periphilin 1##AK055690|PPHLN1|51535|periphilin 1##AK056622|PPHLN1|51535|periphilin 1##AK299951|PPHLN1|51535|periphilin 1##AY039238|PPHLN1|51535|periphilin 1##AK303680|PPHLN1|51535|periphilin 1##AF151066|PPHLN1|51535|periphilin 1##AK308022|PPHLN1|51535|periphilin 1##BC015322|PPHLN1|51535|periphilin 1##BC025306|PPHLN1|51535|periphilin 1##BC039832|PPHLN1|51535|periphilin 1##BC040449|PPHLN1|51535|periphilin 1##AF151040|PPHLN1|51535|periphilin 1##AK308244|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC005099|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC010177|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##BC022543|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##AB062361|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_033114|ZCRB1|85437|zinc finger CCHC-type and RNA binding motif 1##NM_001190979|YAF2|10138|YY1 associated factor 2##NM_001190980|YAF2|10138|YY1 associated factor 2##NM_005748|YAF2|10138|YY1 associated factor 2##AK122877|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144882|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144883|PRICKLE1|144165|prickle homolog 1 (Drosophila)	0.0	0.0	
chr16	56691007	56691175	reg1012400.p1	4.670	+	AY168638 NM_005947 AF349000 BC069421 BC137478 BC137479	-5265	+	AY028617 NM_005946 BC029475 AF348995	-18505	+	NM_176870 AF136177 TSC_hg19_v1_chr16_+_56666570 BC028280 BC103841	-24531	+	BC029453 NM_005949	763	+	AB528657 S68954 BC035287 BC048334 BC005311 BC020757 NM_005950 TSC_hg19_v1_chr16_-_56701976	10853	-	BC008408 NM_005951 BC059780 X64177 BC146930 BC146934 BT007171 S68948	12669	+	AY168638|MT1B|4490|metallothionein 1B##NM_005947|MT1B|4490|metallothionein 1B##AF349000|MT1B|4490|metallothionein 1B##BC069421|MT1B|4490|metallothionein 1B##BC137478|MT1B|4490|metallothionein 1B##BC137479|MT1B|4490|metallothionein 1B##AY028617|MT1A|4489|metallothionein 1A##NM_005946|MT1A|4489|metallothionein 1A##BC029475|MT1A|4489|metallothionein 1A##AF348995|MT1A|4489|metallothionein 1A##NM_176870|MT1M|4499|metallothionein 1M##AF136177|MT1M|4499|metallothionein 1M##BC028280|MT1M|4499|metallothionein 1M##BC103841|MT1M|4499|metallothionein 1M##BC029453|MT1F|4494|metallothionein 1F##NM_005949|MT1F|4494|metallothionein 1F##S68954|MT1G|4495|metallothionein 1G##BC035287|MT1G|4495|metallothionein 1G##BC005311|MT1G|4495|metallothionein 1G##BC020757|MT1G|4495|metallothionein 1G##NM_005950|MT1G|4495|metallothionein 1G##BC008408|MT1H|4496|metallothionein 1H##NM_005951|MT1H|4496|metallothionein 1H##BC059780|MT1H|4496|metallothionein 1H##X64177|MT1H|4496|metallothionein 1H##BC146930|MT1H|4496|metallothionein 1H##BC146934|MT1H|4496|metallothionein 1H##BT007171|MT1H|4496|metallothionein 1H##S68948|MT1H|4496|metallothionein 1H	3.220457	0.0	denovo_WM_7:-15:0.335	denovo_WM_7:-16:0.249	denovo_WM_7:-33:0.229	denovo_WM_7:-34:0.285	denovo_WM_7:-64:0.409	denovo_WM_7:-70:0.560
chr19	18668281	18668461	reg1013376.p1	4.670	+	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	-13989	-	TSC_hg19_v1_chr19_-_18654341 AY278607 AK313363 BX647720	-14048	-	TSC_hg19_v1_chr19_-_18653874 AK300571	-14594	-	NM_001171948 NM_001171949 NM_024069 TSC_hg19_v1_chr19_+_18668584 AK125365 AK098346 BC001080 BC006479	239	+	TSC_hg19_v1_chr19_+_18668679 AF173381	303	+	NM_001033930 NM_003333 TSC_hg19_v1_chr19_+_18682666 AF348700 BC101830 BC101832 BC143668 D28425 AK314717	14286	+	BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa##AY278607|FKBP8|23770|FK506 binding protein 8, 38kDa##AK313363|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647720|FKBP8|23770|FK506 binding protein 8, 38kDa##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_001171948|KXD1|79036|KxDL motif containing 1##NM_001171949|KXD1|79036|KxDL motif containing 1##NM_024069|KXD1|79036|KxDL motif containing 1##AK125365|KXD1|79036|KxDL motif containing 1##AK098346|KXD1|79036|KxDL motif containing 1##BC001080|KXD1|79036|KxDL motif containing 1##BC006479|KXD1|79036|KxDL motif containing 1##AF173381|KXD1|79036|KxDL motif containing 1##NM_001033930|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_003333|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AF348700|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101830|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101832|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC143668|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AK314717|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1	0.399237	0.0	denovo_WM_7:-104:0.399
chr19	57808739	57808910	reg1012710.p1	4.670	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	-16937	+	TSC_hg19_v1_chr19_+_57791351 AK298106	-17468	+	TSC_hg19_v1_chr19_+_57752051 NM_001023563 NM_001145078	-56767	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	23090	+	TSC_hg19_v1_chr19_+_57862669 NM_020657 AJ276316 BC111531 BC111532	53839	+	AF058918 AF291676 AK055662 NM_173631 BC008889 BC032809 BC042681 AL832545 BC064426 AK291464	66092	+	AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##AK298106|ZNF460|10794|zinc finger protein 460##NM_001023563|ZNF805|390980|zinc finger protein 805##NM_001145078|ZNF805|390980|zinc finger protein 805##NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543##NM_020657|ZNF304|57343|zinc finger protein 304##AJ276316|ZNF304|57343|zinc finger protein 304##BC111531|ZNF304|57343|zinc finger protein 304##BC111532|ZNF304|57343|zinc finger protein 304##AF058918|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AF291676|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##AK055662|ZNF547|284306|zinc finger protein 547##NM_173631|ZNF547|284306|zinc finger protein 547##BC008889|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC032809|TRAPPC2P1|10597|trafficking protein particle complex 2 pseudogene 1##BC042681|ZNF547|284306|zinc finger protein 547##AL832545|ZNF547|284306|zinc finger protein 547##AK291464|ZNF547|284306|zinc finger protein 547	1.983137	0.0	
chr4	80838445	80838567	reg1012062.p1	4.670	+	CU688758 DQ891321 DQ894505 BC058888 AK312768 BC029820 BC048274 X78712 NM_033214 AK292241 BC027598	-509139	-	BC063623 BC080651 BC004552 NM_032693	-591345	-	AK055774 BX648346 CU689134 AY424281 BC029604 TSC_hg19_v1_chr4_-_79860593 BC031256 BC047510 AK291232 NM_001040202 AX775925	-978024	-	AB527650 AY233452 TSC_hg19_v1_chr4_-_80993874 AY040326 BC114374 AB209913	155382	-	TSC_hg19_v1_chr4_-_80994237 AK091721 AX747144	155731	-	TSC_hg19_v1_chr4_-_80994394 NM_001145794 NM_058172 BC107876	155961	-	DQ891321|GK2|2712|glycerol kinase 2##DQ894505|GK2|2712|glycerol kinase 2##BC058888|GK2|2712|glycerol kinase 2##BC029820|GK2|2712|glycerol kinase 2##BC048274|GK2|2712|glycerol kinase 2##X78712|GK2|2712|glycerol kinase 2##NM_033214|GK2|2712|glycerol kinase 2##AK292241|GK2|2712|glycerol kinase 2##BC027598|GK2|2712|glycerol kinase 2##BC063623|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC080651|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC004552|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##NM_032693|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##AK055774|PAQR3|152559|progestin and adipoQ receptor family member III##BX648346|PAQR3|152559|progestin and adipoQ receptor family member III##AY424281|PAQR3|152559|progestin and adipoQ receptor family member III##BC029604|PAQR3|152559|progestin and adipoQ receptor family member III##BC031256|PAQR3|152559|progestin and adipoQ receptor family member III##BC047510|PAQR3|152559|progestin and adipoQ receptor family member III##AK291232|PAQR3|152559|progestin and adipoQ receptor family member III##NM_001040202|PAQR3|152559|progestin and adipoQ receptor family member III##AX775925|PAQR3|152559|progestin and adipoQ receptor family member III##AY233452|ANTXR2|118429|anthrax toxin receptor 2##AY040326|ANTXR2|118429|anthrax toxin receptor 2##BC114374|ANTXR2|118429|anthrax toxin receptor 2##AB209913|ANTXR2|118429|anthrax toxin receptor 2##NM_001145794|ANTXR2|118429|anthrax toxin receptor 2##NM_058172|ANTXR2|118429|anthrax toxin receptor 2##BC107876|ANTXR2|118429|anthrax toxin receptor 2	0.83221	0.977459	CTCF.p2:10:0.977	denovo_WM_7:-29:0.312	denovo_WM_7:-31:0.409
chr6	73093084	73093245	reg1010955.p2	4.670	+	NM_001168411 AK300853	-16707	+	AK308658 NM_001168410	-166702	+	AK309185 NM_001168409	-167020	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	238406	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	238725	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	238897	+	NM_001168411|RIMS1|22999|regulating synaptic membrane exocytosis 1##AK300853|RIMS1|22999|regulating synaptic membrane exocytosis 1##AK308658|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_001168410|RIMS1|22999|regulating synaptic membrane exocytosis 1##AK309185|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_001168409|RIMS1|22999|regulating synaptic membrane exocytosis 1##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5	0.868804	0.0	denovo_WM_7:9:0.400	denovo_WM_7:13:0.314
chr18	56065181	56065320	reg1004210.p1	4.669	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-176400	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-176447	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-176488	+	BX647796 NM_052947	230938	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	273391	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	273478	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.0	0.0	
chr5	142206637	142206751	reg1011658.p1	4.669	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-56386	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-56722	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-129123	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	576129	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	576412	-	BC015610 TSC_hg19_v1_chr5_-_142783214	576517	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	1.068165	0.0	denovo_WM_7:-20:0.871
chr7	106791173	106791292	reg1005681.p2	4.669	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-106029	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-285303	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-285458	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	18207	+	NM_005295 AK122621 AK307393	319270	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	413178	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	1.938295	0.0	denovo_WM_7:-67:0.964
chr12	12317740	12317920	reg1010857.p1	4.668	+	AK074543 TSC_hg19_v1_chr12_-_12291395	-26446	-	AF281254 AF281255 NM_030766 NM_138722	-93429	+	AK292995 TSC_hg19_v1_chr12_+_12223872 BC025778 NM_138723 AK223415	-93947	+	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	102012	-	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	185342	-	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	192335	+	AK074543|LRP6|4040|low density lipoprotein receptor-related protein 6##AF281254|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AF281255|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_030766|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138722|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK292995|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC025778|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##NM_138723|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##AK223415|BCL2L14|79370|BCL2-like 14 (apoptosis facilitator)##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1	1.98613	0.0	denovo_WM_7:31:0.233	denovo_WM_7:32:0.200	denovo_WM_7:52:0.232
chr2	213780348	213780528	reg1013359.p2	4.668	+	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	-377123	-	AK316425 NM_001122634 AK302778 AY317138	-2322353	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	-2359049	+	AK301503 AF130863 NM_016260	234617	-	BC028936 NM_001079526	235894	-	AK124960 NM_001242575	368490	-	BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK316425|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122634|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK302778|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AY317138|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451	0.976726	0.0	denovo_WM_7:-5:0.422	denovo_WM_7:-7:0.370
chr22	29562123	29562263	reg1010262.p2	4.668	+	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	-93171	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	-104344	-	TSC_hg19_v1_chr22_+_29449893 BC042614	-112268	+	TSC_hg19_v1_chr22_+_29601914 BC046358 NM_133455 CR456407 CU012965 CU013253 AB463024 AJ416090	39699	+	TSC_hg19_v1_chr22_-_29663824 AL050346 NM_012265	101675	-	NM_001163285 NM_001163286 NM_001163287 NM_005243 NM_013986 TSC_hg19_v1_chr22_+_29664088	101854	+	BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##BC042614|ZNRF3|84133|zinc and ring finger 3##BC046358|EMID1|129080|EMI domain containing 1##NM_133455|EMID1|129080|EMI domain containing 1##CR456407|EMID1|129080|EMI domain containing 1##CU012965|EMID1|129080|EMI domain containing 1##CU013253|EMID1|129080|EMI domain containing 1##AJ416090|EMID1|129080|EMI domain containing 1##AL050346|RHBDD3|25807|rhomboid domain containing 3##NM_012265|RHBDD3|25807|rhomboid domain containing 3##NM_001163285|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163286|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163287|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_005243|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_013986|EWSR1|2130|Ewing sarcoma breakpoint region 1	0.998474	0.0	denovo_WM_7:28:0.772
chr2	88043227	88043353	reg1010631.p1	4.668	+	TSC_hg19_v1_chr2_+_87755060 AK312010	-288230	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	-288273	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-739958	-	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	4329	+	AK302429 NM_001078170	81995	-	CR749330 NM_001024457	242018	-	AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1##AK302429|RGPD2|729857|RANBP2-like and GRIP domain containing 2##NM_001078170|RGPD2|729857|RANBP2-like and GRIP domain containing 2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1	1.110182	0.161553	denovo_WM_7:-14:0.300	denovo_WM_7:-15:0.301	denovo_WM_7:-16:0.328
chr8	9195914	9196042	reg1009421.p1	4.668	+	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	-186878	-	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	-187800	-	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-335473	+	TSC_hg19_v1_chr8_+_9413421 BC098394	217427	+	TSC_hg19_v1_chr8_+_9413423 AK302031	217445	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	217503	+	AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.011659	0.0	
chr10	30960084	30960197	reg1013845.p1	4.667	+	AF139543 BC066294 NM_183058	-41505	-	TSC_hg19_v1_chr10_+_30723112 AK313295 AK290320 D14497	-237019	+	TSC_hg19_v1_chr10_+_30722975 NM_001244134 NM_005204	-237201	+	TSC_hg19_v1_chr10_-_31288450 AK131357 NM_001143769	328312	-	TSC_hg19_v1_chr10_-_31320787 BC104669 DQ356012 AK292730 AK294253 AK057323 NM_001143766 NM_001143767 NM_001143768 NM_001143770 NM_001143771 NM_182755	360681	-	TSC_hg19_v1_chr10_+_31607451 BX647794	647296	+	AF139543|LYZL2|119180|lysozyme-like 2##BC066294|LYZL2|119180|lysozyme-like 2##NM_183058|LYZL2|119180|lysozyme-like 2##AK313295|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK290320|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##D14497|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_001244134|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##NM_005204|MAP3K8|1326|mitogen-activated protein kinase kinase kinase 8##AK131357|ZNF438|220929|zinc finger protein 438##NM_001143769|ZNF438|220929|zinc finger protein 438##BC104669|ZNF438|220929|zinc finger protein 438##DQ356012|ZNF438|220929|zinc finger protein 438##AK292730|ZNF438|220929|zinc finger protein 438##AK294253|ZNF438|220929|zinc finger protein 438##AK057323|ZNF438|220929|zinc finger protein 438##NM_001143766|ZNF438|220929|zinc finger protein 438##NM_001143767|ZNF438|220929|zinc finger protein 438##NM_001143768|ZNF438|220929|zinc finger protein 438##NM_001143770|ZNF438|220929|zinc finger protein 438##NM_001143771|ZNF438|220929|zinc finger protein 438##NM_182755|ZNF438|220929|zinc finger protein 438##BX647794|ZEB1|6935|zinc finger E-box binding homeobox 1	0.100328	0.0262	
chr11	34265481	34265661	reg1000972.p1	4.667	+	TSC_hg19_v1_chr11_+_34127208 AK294044 AL136882 AK001636 BC014440 BC020205	-138321	+	NM_001144030 NM_024662 TSC_hg19_v1_chr11_+_34127175 AK022241 AK225341 BC035558 AB051496	-138414	+	TSC_hg19_v1_chr11_+_34073956 EU176359 EU176467 EU176701	-191534	+	TSC_hg19_v1_chr11_-_34379556 AK291744 NM_145804	113984	-	TSC_hg19_v1_chr11_+_34460487 AK291585 NM_001752 BC110398 AK315350 X04076 BC112217 BC112219	194903	+	TSC_hg19_v1_chr11_+_34460533 AB587573 AY028632 HQ258304	194978	+	AK294044|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AL136882|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK001636|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC014440|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC020205|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_001144030|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_024662|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK022241|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK225341|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC035558|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AB051496|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##EU176359|CAPRIN1|4076|cell cycle associated protein 1##EU176467|CAPRIN1|4076|cell cycle associated protein 1##EU176701|CAPRIN1|4076|cell cycle associated protein 1##AK291744|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##NM_145804|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##AK291585|CAT|847|catalase##NM_001752|CAT|847|catalase##BC110398|CAT|847|catalase##AK315350|CAT|847|catalase##X04076|CAT|847|catalase##BC112217|CAT|847|catalase##BC112219|CAT|847|catalase##AY028632|CAT|847|catalase##HQ258304|CAT|847|catalase	0.0	0.0	
chr19	11316739	11316896	reg1007265.p1	4.667	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-8355	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	-8559	-	AB528156 AY639929 CU687364 NM_015493	-11592	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	33479	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	56321	-	AF133424 NM_012466 BC029908	90016	+	AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16	0.0	0.0	
chr19	19959982	19960141	reg1013285.p1	4.667	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	-27509	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	-72856	-	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	-116214	-	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	16623	+	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	51723	+	AK098164 NM_001077349	189977	-	AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93##AK098164|ZNF682|91120|zinc finger protein 682##NM_001077349|ZNF682|91120|zinc finger protein 682	0.990253	0.0	denovo_WM_7:-31:0.967
chr20	44539246	44539403	reg1013550.p1	4.667	+	TSC_hg19_v1_chr20_-_44538714 AF052157	-628	-	TSC_hg19_v1_chr20_+_44520214 M22960 DQ891935 DQ895122 AK097786	-19115	+	TSC_hg19_v1_chr20_+_44520051 BC000597	-19262	+	TSC_hg19_v1_chr20_-_44539546 AK293150	225	-	TSC_hg19_v1_chr20_-_44539607 NM_001242921	290	-	AK097009 BC019898 BC005045 BC019847 L26232 AB076694 AK092397 AK092523 AK222690 AK289371 AX747583 TSC_hg19_v1_chr20_-_44540795 AK299181	1418	-	AF052157|PLTP|5360|phospholipid transfer protein##M22960|CTSA|5476|cathepsin A##DQ891935|CTSA|5476|cathepsin A##DQ895122|CTSA|5476|cathepsin A##AK097786|CTSA|5476|cathepsin A##BC000597|CTSA|5476|cathepsin A##AK293150|PLTP|5360|phospholipid transfer protein##NM_001242921|PLTP|5360|phospholipid transfer protein##AK097009|PLTP|5360|phospholipid transfer protein##BC019898|PLTP|5360|phospholipid transfer protein##BC005045|PLTP|5360|phospholipid transfer protein##BC019847|PLTP|5360|phospholipid transfer protein##L26232|PLTP|5360|phospholipid transfer protein##AB076694|PLTP|5360|phospholipid transfer protein##AK092397|PLTP|5360|phospholipid transfer protein##AK092523|PLTP|5360|phospholipid transfer protein##AK222690|PLTP|5360|phospholipid transfer protein##AK289371|PLTP|5360|phospholipid transfer protein##AK299181|PLTP|5360|phospholipid transfer protein	0.993982	0.0	denovo_WM_7:-59:0.305	denovo_WM_7:-60:0.305	denovo_WM_7:-61:0.305
chr3	15809310	15809380	reg1010751.p1	4.667	+	AY367056 NM_001195099 BC035170 BC048975	-11268	-	TSC_hg19_v1_chr3_+_15643452 AK301838	-165882	+	AK297033 TSC_hg19_v1_chr3_+_15643251 NM_000060 AK313252 AK294301 U03274 BC012099 CU680214	-166097	+	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	30337	-	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	91667	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	406849	+	AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28##AK301838|BTD|686|biotinidase##AK297033|BTD|686|biotinidase##NM_000060|BTD|686|biotinidase##AK313252|BTD|686|biotinidase##AK294301|BTD|686|biotinidase##U03274|BTD|686|biotinidase##BC012099|BTD|686|biotinidase##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	1.027113	0.0	
chr4	87829509	87829628	reg1011161.p1	4.667	+	BC016746 BC063410 NM_144645	-16008	-	AJ583502 BC107051 BC107052 EF437223 NM_197965	-59227	-	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-314095	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	26647	+	TSC_hg19_v1_chr4_+_87857481 L13743	27915	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	98753	+	BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1	0.99959	0.0	denovo_WM_7:44:0.828
chr5	100154250	100154389	reg1011380.p1	4.667	+	AF529367 TSC_hg19_v1_chr5_+_99871306	-283049	+	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	-283246	+	BC054860 BC117134 NM_001270 AF006513	-1892091	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	84609	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	1477789	-	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	1680314	-	AF529367|FAM174A|345757|family with sequence similarity 174, member A##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1	0.089996	0.0	
chr5	45794267	45794367	reg1007361.p2	4.667	+	AF488549 NM_021072	-98098	-	AF064876 TSC_hg19_v1_chr5_-_45695947	-98426	-	TSC_hg19_v1_chr5_+_44809056 AF146192 AL355715 NM_016640 AK222704 BC007735 AK222894 AL136706 AK074777 CU675783 BC002460	-985290	+	AK300860 TSC_hg19_v1_chr5_-_49737200 BC059398	3942882	-	TSC_hg19_v1_chr5_-_49737229 NM_198449	3942926	-	AK298680 AK314466 BC105789 NM_001178055	4167415	+	AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF064876|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF146192|MRPS30|10884|mitochondrial ribosomal protein S30##AL355715|MRPS30|10884|mitochondrial ribosomal protein S30##NM_016640|MRPS30|10884|mitochondrial ribosomal protein S30##AK222704|MRPS30|10884|mitochondrial ribosomal protein S30##BC007735|MRPS30|10884|mitochondrial ribosomal protein S30##AK222894|MRPS30|10884|mitochondrial ribosomal protein S30##AL136706|MRPS30|10884|mitochondrial ribosomal protein S30##AK074777|MRPS30|10884|mitochondrial ribosomal protein S30##BC002460|MRPS30|10884|mitochondrial ribosomal protein S30##AK300860|EMB|133418|embigin##BC059398|EMB|133418|embigin##NM_198449|EMB|133418|embigin##AK298680|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK314466|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##BC105789|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_001178055|PARP8|79668|poly (ADP-ribose) polymerase family, member 8	0.0	0.0	
chr19	33061253	33061397	reg1006805.p2	4.666	+	NM_207325 TSC_hg19_v1_chr19_+_32897021 AK126757 AF533710	-164268	+	TSC_hg19_v1_chr19_+_32896675 NM_001172774 AK129497 AF533711 BC029162	-164712	+	TSC_hg19_v1_chr19_-_32896476 BC000922	-164833	-	TSC_hg19_v1_chr19_+_33072095 NM_004708 AK293486 AB209040 BC015519 AF014955 DQ208400 AB590247 DQ893577 DQ894611 BT006694 CR456934	10802	+	BC050529 TSC_hg19_v1_chr19_-_33166076 AF447882 AL136784 AK054561 BC045605 NM_032139	104762	-	AK124499 NM_207391	104987	+	NM_207325|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AK126757|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AF533710|DPY19L3|147991|dpy-19-like 3 (C. elegans)##NM_001172774|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AK129497|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AF533711|DPY19L3|147991|dpy-19-like 3 (C. elegans)##BC029162|DPY19L3|147991|dpy-19-like 3 (C. elegans)##BC000922|LOC400684|400684|uncharacterized LOC400684##NM_004708|PDCD5|9141|programmed cell death 5##AK293486|PDCD5|9141|programmed cell death 5##AB209040|PDCD5|9141|programmed cell death 5##BC015519|PDCD5|9141|programmed cell death 5##AF014955|PDCD5|9141|programmed cell death 5##DQ208400|PDCD5|9141|programmed cell death 5##DQ893577|PDCD5|9141|programmed cell death 5##DQ894611|PDCD5|9141|programmed cell death 5##BT006694|PDCD5|9141|programmed cell death 5##CR456934|PDCD5|9141|programmed cell death 5##BC050529|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AF447882|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AL136784|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AK054561|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##BC045605|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##NM_032139|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AK124499|RGS9BP|388531|regulator of G protein signaling 9 binding protein##NM_207391|RGS9BP|388531|regulator of G protein signaling 9 binding protein	0.917765	0.035812	
chr12	1643477	1643596	reg1012480.p1	4.665	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-543084	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-584710	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-626454	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	59815	-	AY009399 NM_030775	82685	+	BC001749 NM_032642	94875	+	NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B	1.609473	0.0	denovo_WM_7:57:0.468	denovo_WM_7:72:0.286	denovo_WM_7:73:0.295
chr12	9497800	9497980	reg1006568.p2	4.665	+	TSC_hg19_v1_chr12_+_9436619 AK123583 AK309820	-61265	+	BC111756 AK313639 NM_002864 X54380	-136928	-	TSC_hg19_v1_chr12_-_9268536 NM_000014	-229332	-	TSC_hg19_v1_chr12_-_9600810 BC035635 BC128040 BC111733	102908	-	BC027885 BC113997 BC114516 U11276 NM_002258 AK292022	262606	-	TSC_hg19_v1_chr12_+_9800760 AK096274	303006	+	AK309820|LOC642846|642846|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like##BC111756|PZP|5858|pregnancy-zone protein##AK313639|PZP|5858|pregnancy-zone protein##NM_002864|PZP|5858|pregnancy-zone protein##X54380|PZP|5858|pregnancy-zone protein##NM_000014|A2M|2|alpha-2-macroglobulin##BC035635|DDX12P|440081|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK096274|LOC374443|374443|CLR pseudogene	0.0	0.0	
chr21	43837849	43838029	reg1012361.p2	4.665	+	NM_001001895 NM_001243467 NM_018961 AK313367 AK301279 BC028138 AJ277750 BC069357 BC069483 BC069577 BC069511 TSC_hg19_v1_chr21_+_43824026 AK308151 AF520809 AF521702 CU686870	-13927	+	AY358458 AF201380 AF267741 AK172842 AB038157 AB038160 NM_024022 NM_032405	-21778	-	M12075 BC032811 NM_003225 X00474 X52003	-51317	-	HQ258144 AK314746 BC101519 BC113367 AK057315 AB041016 NM_080860 AB006536	78441	-	AJ269529 NM_018964	81802	+	TSC_hg19_v1_chr21_+_43933984 BC042139 AF311320	96064	+	NM_001001895|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_001243467|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_018961|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK313367|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK301279|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC028138|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AJ277750|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069357|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069483|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069577|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069511|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK308151|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF520809|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF521702|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AY358458|TMPRSS3|64699|transmembrane protease, serine 3##AF201380|TMPRSS3|64699|transmembrane protease, serine 3##AF267741|TMPRSS3|64699|transmembrane protease, serine 3##AK172842|TMPRSS3|64699|transmembrane protease, serine 3##AB038157|TMPRSS3|64699|transmembrane protease, serine 3##AB038160|TMPRSS3|64699|transmembrane protease, serine 3##NM_024022|TMPRSS3|64699|transmembrane protease, serine 3##NM_032405|TMPRSS3|64699|transmembrane protease, serine 3##M12075|TFF1|7031|trefoil factor 1##BC032811|TFF1|7031|trefoil factor 1##NM_003225|TFF1|7031|trefoil factor 1##X00474|TFF1|7031|trefoil factor 1##X52003|TFF1|7031|trefoil factor 1##HQ258144|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK314746|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC101519|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC113367|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK057315|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB041016|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##NM_080860|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB006536|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AJ269529|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##NM_018964|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##BC042139|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##AF311320|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1	1.976288	0.0	denovo_WM_7:37:0.567
chr22	19378092	19378230	reg1008082.p1	4.665	+	BC143977 BC143979 TSC_hg19_v1_chr22_-_19279243 X95486 AK302506 U60802 U60803 NM_001835 NM_007098	-98945	-	TSC_hg19_v1_chr22_-_19166299 NM_005984	-211858	-	TSC_hg19_v1_chr22_-_19166279 AK292313 L75823	-211881	-	AB384712 CU013101 CU013389 CR456503 X81844 TSC_hg19_v1_chr22_-_19419085	40889	-	TSC_hg19_v1_chr22_-_19419214 BC039835	41034	-	TSC_hg19_v1_chr22_-_19419257 NM_003325 X75296 X89887 BC032721	41086	-	BC143977|CLTCL1|8218|clathrin, heavy chain-like 1##BC143979|CLTCL1|8218|clathrin, heavy chain-like 1##X95486|CLTCL1|8218|clathrin, heavy chain-like 1##AK302506|CLTCL1|8218|clathrin, heavy chain-like 1##U60802|CLTCL1|8218|clathrin, heavy chain-like 1##U60803|CLTCL1|8218|clathrin, heavy chain-like 1##NM_001835|CLTCL1|8218|clathrin, heavy chain-like 1##NM_007098|CLTCL1|8218|clathrin, heavy chain-like 1##NM_005984|SLC25A1|6576|solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1##AK292313|SLC25A1|6576|solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1##L75823|SLC25A1|6576|solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1##CU013101|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##CU013389|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##CR456503|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##X81844|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##BC039835|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##NM_003325|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##X75296|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##X89887|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##BC032721|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)	1.690354	0.0	denovo_WM_7:-13:0.610	denovo_WM_7:-28:0.669
chr2	74219272	74219429	reg1010469.p2	4.665	+	TSC_hg19_v1_chr2_+_74154019 X97386	-65304	+	TSC_hg19_v1_chr2_+_74154006 BC024019 U41668 BC001121 BC015757	-65350	+	TSC_hg19_v1_chr2_+_74153968 NM_080916 NM_080918	-65400	+	NM_144993	54099	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	155668	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	155870	+	X97386|DGUOK|1716|deoxyguanosine kinase##BC024019|DGUOK|1716|deoxyguanosine kinase##U41668|DGUOK|1716|deoxyguanosine kinase##BC001121|DGUOK|1716|deoxyguanosine kinase##BC015757|DGUOK|1716|deoxyguanosine kinase##NM_080916|DGUOK|1716|deoxyguanosine kinase##NM_080918|DGUOK|1716|deoxyguanosine kinase##NM_144993|TET3|200424|tet methylcytosine dioxygenase 3##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)	1.469582	0.0	denovo_WM_7:76:0.443	denovo_WM_7:84:0.383	denovo_WM_7:91:0.456
chr4	76912012	76912155	reg1009278.p1	4.665	+	TSC_hg19_v1_chr4_-_76878561 AF132198	-33522	-	TSC_hg19_v1_chr4_-_76862135 AB161353 AK309271 BC006388 BC011854 NM_001042402 NM_014435	-49954	-	BX648754 AF023456 NM_006239	-88456	-	TSC_hg19_v1_chr4_-_76912093 BC054040 BC063797 AK300074 CR749574 BC107895 AK307540 NM_018115	1	-	AB590958 CU687652 BC042178 NM_002416 X72755 BC025745 AK311852 BC063122 BC095396	16548	-	NM_001130017 AK225860 AY543657 AY543658 AY543659 AY543656 U47054	20311	+	AF132198|SDAD1|55153|SDA1 domain containing 1##AB161353|NAAA|27163|N-acylethanolamine acid amidase##AK309271|NAAA|27163|N-acylethanolamine acid amidase##BC006388|NAAA|27163|N-acylethanolamine acid amidase##BC011854|NAAA|27163|N-acylethanolamine acid amidase##NM_001042402|NAAA|27163|N-acylethanolamine acid amidase##NM_014435|NAAA|27163|N-acylethanolamine acid amidase##BX648754|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##AF023456|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##NM_006239|PPEF2|5470|protein phosphatase, EF-hand calcium binding domain 2##BC054040|SDAD1|55153|SDA1 domain containing 1##BC063797|SDAD1|55153|SDA1 domain containing 1##AK300074|SDAD1|55153|SDA1 domain containing 1##CR749574|SDAD1|55153|SDA1 domain containing 1##BC107895|SDAD1|55153|SDA1 domain containing 1##AK307540|SDAD1|55153|SDA1 domain containing 1##NM_018115|SDAD1|55153|SDA1 domain containing 1##BC042178|CXCL9|4283|chemokine (C-X-C motif) ligand 9##NM_002416|CXCL9|4283|chemokine (C-X-C motif) ligand 9##X72755|CXCL9|4283|chemokine (C-X-C motif) ligand 9##BC025745|CXCL9|4283|chemokine (C-X-C motif) ligand 9##AK311852|CXCL9|4283|chemokine (C-X-C motif) ligand 9##BC063122|CXCL9|4283|chemokine (C-X-C motif) ligand 9##BC095396|CXCL9|4283|chemokine (C-X-C motif) ligand 9##NM_001130017|ART3|419|ADP-ribosyltransferase 3##AK225860|ART3|419|ADP-ribosyltransferase 3##AY543657|ART3|419|ADP-ribosyltransferase 3##AY543658|ART3|419|ADP-ribosyltransferase 3##AY543659|ART3|419|ADP-ribosyltransferase 3##AY543656|ART3|419|ADP-ribosyltransferase 3##U47054|ART3|419|ADP-ribosyltransferase 3	0.0	0.0	
chr7	121072466	121072601	reg1008838.p1	4.665	+	TSC_hg19_v1_chr7_-_121036363 AK292731 AK290682 BC068526 NM_001040020 NM_014888	-36119	-	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	-36196	-	AF169963 NM_057168	-103444	+	NM_001206838 NM_001206839 NM_002851 TSC_hg19_v1_chr7_+_121513164	440628	+	TSC_hg19_v1_chr7_+_121513214 U88967	440688	+	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	711756	-	AK292731|FAM3C|10447|family with sequence similarity 3, member C##AK290682|FAM3C|10447|family with sequence similarity 3, member C##BC068526|FAM3C|10447|family with sequence similarity 3, member C##NM_001040020|FAM3C|10447|family with sequence similarity 3, member C##NM_014888|FAM3C|10447|family with sequence similarity 3, member C##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C##AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_001206838|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_001206839|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_002851|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase	2.964548	0.0	denovo_WM_7:32:0.305	denovo_WM_7:33:0.305	denovo_WM_7:34:0.305	denovo_WM_7:55:0.823	denovo_WM_7:72:0.834
chr7	24872131	24872229	reg1007857.p1	4.665	+	TSC_hg19_v1_chr7_-_24797557 NM_001127454 NM_004403	-74583	-	TSC_hg19_v1_chr7_-_24797316 BC125065 BC125066 AF073308	-74841	-	TSC_hg19_v1_chr7_-_24797055 AK290775 AK314402 NM_001127453	-75113	-	AF323727 AY008372 TSC_hg19_v1_chr7_-_25019775 AF392444 BC017731 NM_015550 NM_145320 NM_145321 NM_145322 AB014604	147564	-	AL713681 BC005299 BC008475 BC008477 BC009578 BC009579 BC009582 BC009587 BC009602 BC014359 BC014361 BC015130 BC016006 BC021994 BC022330 BC067222 BC068464 BC070156 BC071761 TSC_hg19_v1_chr7_-_25164884 BC070346 BC009607	292697	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	292760	-	NM_001127454|DFNA5|1687|deafness, autosomal dominant 5##NM_004403|DFNA5|1687|deafness, autosomal dominant 5##BC125065|DFNA5|1687|deafness, autosomal dominant 5##BC125066|DFNA5|1687|deafness, autosomal dominant 5##AF073308|DFNA5|1687|deafness, autosomal dominant 5##AK290775|DFNA5|1687|deafness, autosomal dominant 5##AK314402|DFNA5|1687|deafness, autosomal dominant 5##NM_001127453|DFNA5|1687|deafness, autosomal dominant 5##AF323727|OSBPL3|26031|oxysterol binding protein-like 3##AY008372|OSBPL3|26031|oxysterol binding protein-like 3##AF392444|OSBPL3|26031|oxysterol binding protein-like 3##BC017731|OSBPL3|26031|oxysterol binding protein-like 3##NM_015550|OSBPL3|26031|oxysterol binding protein-like 3##NM_145320|OSBPL3|26031|oxysterol binding protein-like 3##NM_145321|OSBPL3|26031|oxysterol binding protein-like 3##NM_145322|OSBPL3|26031|oxysterol binding protein-like 3##AB014604|OSBPL3|26031|oxysterol binding protein-like 3##AL713681|CYCS|54205|cytochrome c, somatic##BC005299|CYCS|54205|cytochrome c, somatic##BC008475|CYCS|54205|cytochrome c, somatic##BC008477|CYCS|54205|cytochrome c, somatic##BC009578|CYCS|54205|cytochrome c, somatic##BC009579|CYCS|54205|cytochrome c, somatic##BC009582|CYCS|54205|cytochrome c, somatic##BC009587|CYCS|54205|cytochrome c, somatic##BC009602|CYCS|54205|cytochrome c, somatic##BC014359|CYCS|54205|cytochrome c, somatic##BC014361|CYCS|54205|cytochrome c, somatic##BC015130|CYCS|54205|cytochrome c, somatic##BC016006|CYCS|54205|cytochrome c, somatic##BC021994|CYCS|54205|cytochrome c, somatic##BC022330|CYCS|54205|cytochrome c, somatic##BC067222|CYCS|54205|cytochrome c, somatic##BC068464|CYCS|54205|cytochrome c, somatic##BC070156|CYCS|54205|cytochrome c, somatic##BC071761|CYCS|54205|cytochrome c, somatic##BC070346|CYCS|54205|cytochrome c, somatic##BC009607|CYCS|54205|cytochrome c, somatic##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic	1.002009	0.0	denovo_WM_7:-36:0.221	denovo_WM_7:-37:0.221	denovo_WM_7:-38:0.226	denovo_WM_7:-39:0.226
chr17	70017655	70017754	reg1008679.p1	4.664	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1852008	+	BC033038 NM_170742	-1916710	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1946274	+	TSC_hg19_v1_chr17_-_70116937 AL833139	99234	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	99455	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	99466	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.0	0.0	
chr19	10353647	10353788	reg1007920.p2	4.663	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-11711	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-47990	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-48112	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	8930	+	TSC_hg19_v1_chr19_+_10362889 BC009858	9181	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	9275	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chr5	464195	464297	reg1009629.p1	4.663	+	TSC_hg19_v1_chr5_+_443320 AK074086 GU727644 NM_007277 BC064569	-20896	+	TSC_hg19_v1_chr5_-_443213 BC014011 BC029796 NM_138464	-21016	-	AB033060 BC151852 BC152406 EU293605 NM_001242412 NM_020731	-159956	+	BC045808 TSC_hg19_v1_chr5_-_473152 BC086861 BC072677 BC064928 AF370427 AK023178	8866	-	BC101669 BC101671 BC143328 U28043 BC011555 NM_004174 TSC_hg19_v1_chr5_-_524565	60259	-	NM_018140 TSC_hg19_v1_chr5_+_612451	148182	+	AK074086|EXOC3|11336|exocyst complex component 3##GU727644|EXOC3|11336|exocyst complex component 3##NM_007277|EXOC3|11336|exocyst complex component 3##BC064569|EXOC3|11336|exocyst complex component 3##BC014011|C5orf55|116349|chromosome 5 open reading frame 55##BC029796|C5orf55|116349|chromosome 5 open reading frame 55##NM_138464|C5orf55|116349|chromosome 5 open reading frame 55##AB033060|AHRR|57491|aryl-hydrocarbon receptor repressor##BC151852|AHRR|57491|aryl-hydrocarbon receptor repressor##BC152406|AHRR|57491|aryl-hydrocarbon receptor repressor##EU293605|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_001242412|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_020731|AHRR|57491|aryl-hydrocarbon receptor repressor##BC045808|PP7080|25845|uncharacterized LOC25845##BC086861|PP7080|25845|uncharacterized LOC25845##BC072677|PP7080|25845|uncharacterized LOC25845##AF370427|PP7080|25845|uncharacterized LOC25845##BC101669|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##BC101671|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##BC143328|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##U28043|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##BC011555|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##NM_004174|SLC9A3|6550|solute carrier family 9 (sodium/hydrogen exchanger), member 3##NM_018140|CEP72|55722|centrosomal protein 72kDa	0.0	0.0	
chr6	62626863	62626937	reg1011872.p2	4.663	+	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-4339221	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-5444485	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-5539829	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	369101	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	1402964	-	TSC_hg19_v1_chr6_+_64231650 CR749458	1604755	+	BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.996913	0.0	
chrY	1574054	1574178	reg1012556.p1	4.663	+	AK301844 NM_001173473	-51465	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-52315	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-113147	-	BC043610 GQ280263 NM_178129 AK126147	31922	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	86413	+	NM_004043 U11090	90231	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.995618	0.0	denovo_WM_7:-76:0.455	denovo_WM_7:-77:0.455
chr11	3900965	3901070	reg1010738.p2	4.662	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-24088	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-38818	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-38862	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	214972	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	215049	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	215142	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.031685	0.0	
chr19	56098825	56098930	reg1009333.p1	4.662	+	TSC_hg19_v1_chr19_-_56092206 AK092772 AX747719 NM_152600	-6663	-	NM_001199824	-41969	-	NM_001101401	-50443	-	BC136512 BC132777 TSC_hg19_v1_chr19_-_56110884 AK027674 NM_032836	11996	-	TSC_hg19_v1_chr19_+_56111653 NM_153219 BC067748	12798	+	NM_001195605	26081	+	AK092772|ZNF579|163033|zinc finger protein 579##NM_152600|ZNF579|163033|zinc finger protein 579##NM_001199824|SGK110|100130827|putative uncharacterized serine/threonine-protein kinase SgK110-like##NM_001101401|SBK2|646643|SH3-binding domain kinase family, member 2##BC136512|FIZ1|84922|FLT3-interacting zinc finger 1##BC132777|FIZ1|84922|FLT3-interacting zinc finger 1##AK027674|FIZ1|84922|FLT3-interacting zinc finger 1##NM_032836|FIZ1|84922|FLT3-interacting zinc finger 1##NM_153219|ZNF524|147807|zinc finger protein 524##BC067748|ZNF524|147807|zinc finger protein 524##NM_001195605|ZNF865|100507290|zinc finger protein 865	0.0	0.0	
chr6	138102832	138102986	reg1012529.p2	4.662	+	BC051352 AK096362 NM_175747	-287384	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-562351	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-562364	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	85628	+	TSC_hg19_v1_chr6_-_138189314 AK124173	86441	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	325659	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	0.995794	0.0	
chrX	40979183	40979325	reg1008754.p1	4.662	+	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	-34382	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-384125	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-384274	-	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	213396	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	214203	+	AK304661 TSC_hg19_v1_chrX_+_41193866 AK127902	214611	+	NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304661|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK127902|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	0.903715	0.0	denovo_WM_7:8:0.260	denovo_WM_7:9:0.619
chr10	71712578	71712718	reg1010213.p2	4.661	+	TSC_hg19_v1_chr10_+_71562275 M59217	-150357	+	AJ293624 TSC_hg19_v1_chr10_+_71561687	-150959	+	NM_001130103 NM_080798 NM_080800 NM_080801 NM_080802 NM_080805 TSC_hg19_v1_chr10_+_71561654 BC139913	-150991	+	NM_018649	99708	+	TSC_hg19_v1_chr10_+_71812601 BC016172 AK022776 AK131057 AF151534 AF336304 AK022475	99949	+	TSC_hg19_v1_chr10_-_71892569 AK027403	179900	-	M59217|COL13A1|1305|collagen, type XIII, alpha 1##AJ293624|COL13A1|1305|collagen, type XIII, alpha 1##NM_001130103|COL13A1|1305|collagen, type XIII, alpha 1##NM_080798|COL13A1|1305|collagen, type XIII, alpha 1##NM_080800|COL13A1|1305|collagen, type XIII, alpha 1##NM_080801|COL13A1|1305|collagen, type XIII, alpha 1##NM_080802|COL13A1|1305|collagen, type XIII, alpha 1##NM_080805|COL13A1|1305|collagen, type XIII, alpha 1##BC139913|COL13A1|1305|collagen, type XIII, alpha 1##NM_018649|H2AFY2|55506|H2A histone family, member Y2##BC016172|H2AFY2|55506|H2A histone family, member Y2##AK022776|H2AFY2|55506|H2A histone family, member Y2##AK131057|H2AFY2|55506|H2A histone family, member Y2##AF151534|H2AFY2|55506|H2A histone family, member Y2##AF336304|H2AFY2|55506|H2A histone family, member Y2##AK022475|H2AFY2|55506|H2A histone family, member Y2##AK027403|AIFM2|84883|apoptosis-inducing factor, mitochondrion-associated, 2	0.816257	0.0	denovo_WM_7:-91:0.246	denovo_WM_7:-92:0.570
chr15	44580128	44580308	reg1003494.p1	4.661	+	AK090572 AX746516 TSC_hg19_v1_chr15_-_44487470	-92749	-	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	-92868	-	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	-461031	+	TSC_hg19_v1_chr15_+_44580919 NM_138423 NM_177974 BC012124	681	+	AK098265 TSC_hg19_v1_chr15_+_44580937	723	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	741	+	AK090572|FRMD5|84978|FERM domain containing 5##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5##NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##NM_138423|CASC4|113201|cancer susceptibility candidate 4##NM_177974|CASC4|113201|cancer susceptibility candidate 4##BC012124|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4	0.967132	0.0	denovo_WM_7:67:0.967
chr5	137087720	137087843	reg1013424.p1	4.661	+	AK098190 BC034035 NM_017415 TSC_hg19_v1_chr5_-_137071807	-16020	-	AF208068 AK314707 TSC_hg19_v1_chr5_-_137071541 AB032955	-16276	-	AF231124 TSC_hg19_v1_chr5_-_136835016 AB209701 BC030691 NM_004598	-252801	-	TSC_hg19_v1_chr5_-_137088952 BC012490	1175	-	L10372 TSC_hg19_v1_chr5_-_137089473	1674	-	AB528924 CR456986 BC007271 BC009284 TSC_hg19_v1_chr5_-_137089840	2022	-	BC034035|KLHL3|26249|kelch-like 3 (Drosophila)##NM_017415|KLHL3|26249|kelch-like 3 (Drosophila)##AF208068|KLHL3|26249|kelch-like 3 (Drosophila)##AK314707|KLHL3|26249|kelch-like 3 (Drosophila)##AB032955|KLHL3|26249|kelch-like 3 (Drosophila)##AF231124|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1##AB209701|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1##BC030691|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1##NM_004598|SPOCK1|6695|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1##BC012490|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##L10372|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##CR456986|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##BC007271|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0##BC009284|HNRNPA0|10949|heterogeneous nuclear ribonucleoprotein A0	0.991519	0.971993	denovo_WM_7:28:0.479	denovo_WM_7:29:0.479	CTCF.p2:-37:0.972
chr7	74064468	74064619	reg1014363.p1	4.661	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-196108	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-196235	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-196379	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	7478	+	TSC_hg19_v1_chr7_+_74072046 BC070484	7501	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	7579	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	0.0	0.0	
chr13	27751262	27751375	reg1007374.p2	4.660	+	TSC_hg19_v1_chr13_-_27746003 BC026072 NM_182488	-5232	-	DQ894074 AF022789 TSC_hg19_v1_chr13_-_27745948 AK289685	-5457	-	AK312602 AK294378 AK311107 AK307756 AK290220 NM_005288 TSC_hg19_v1_chr13_-_27334929	-416465	-	TSC_hg19_v1_chr13_+_27825693 D28406 NM_000982 AK130968 AK311795 BC070185 BC070323 BC070330 BC104667 BX647669 AY320407 U25789 BC104478 L25348 U14967 BC070184 BC001603	74424	+	AY439004 NM_206827	93145	+	TSC_hg19_v1_chr13_+_27844966 HQ258126	93689	+	BC026072|USP12|219333|ubiquitin specific peptidase 12##NM_182488|USP12|219333|ubiquitin specific peptidase 12##DQ894074|USP12|219333|ubiquitin specific peptidase 12##AF022789|USP12|219333|ubiquitin specific peptidase 12##AK289685|USP12|219333|ubiquitin specific peptidase 12##AK312602|GPR12|2835|G protein-coupled receptor 12##AK294378|GPR12|2835|G protein-coupled receptor 12##AK311107|GPR12|2835|G protein-coupled receptor 12##AK307756|GPR12|2835|G protein-coupled receptor 12##AK290220|GPR12|2835|G protein-coupled receptor 12##NM_005288|GPR12|2835|G protein-coupled receptor 12##D28406|RPL21|6144|ribosomal protein L21##NM_000982|RPL21|6144|ribosomal protein L21##AK130968|RPL21|6144|ribosomal protein L21##AK311795|RPL21|6144|ribosomal protein L21##BC070185|RPL21|6144|ribosomal protein L21##BC070323|RPL21|6144|ribosomal protein L21##BC070330|RPL21|6144|ribosomal protein L21##BC104667|RPL21|6144|ribosomal protein L21##BX647669|RPL21|6144|ribosomal protein L21##U25789|RPL21|6144|ribosomal protein L21##BC104478|RPL21|6144|ribosomal protein L21##U14967|RPL21|6144|ribosomal protein L21##BC070184|RPL21|6144|ribosomal protein L21##BC001603|RPL21|6144|ribosomal protein L21##AY439004|RASL11A|387496|RAS-like, family 11, member A##NM_206827|RASL11A|387496|RAS-like, family 11, member A##HQ258126|RASL11A|387496|RAS-like, family 11, member A	1.015252	0.0	denovo_WM_7:-75:0.315	denovo_WM_7:-76:0.315	denovo_WM_7:-77:0.315
chr13	47156907	47157087	reg1003830.p3	4.660	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-29490	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-29577	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-29674	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	214318	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	314070	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1418454	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.0	0.0	
chr17	60248958	60249138	reg1001461.p2	4.660	+	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	-106421	-	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	-243706	-	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-308254	-	NM_001144933	198530	+	AK098684 NM_173503 BC101752 BC101778	208878	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	252215	+	BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A	0.0	0.0	
chr20	52486365	52486545	reg1006905.p2	4.660	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-275656	-	AF041259 NM_006526	-286820	-	AK302570 NM_001193421	-684634	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	200607	-	AK315220 NM_003657	200848	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	304065	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.013058	
chr2	109471842	109472003	reg1012728.p2	4.660	+	TSC_hg19_v1_chr2_+_109403228 BC050579 AK125199 AK057307 NM_144978 BC015847 BC038421	-68720	+	TSC_hg19_v1_chr2_+_109384621 AY170822	-87239	+	TSC_hg19_v1_chr2_+_109335970 D42063 NM_006267	-135984	+	TSC_hg19_v1_chr2_-_109605623 AK296936	133697	-	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	133825	-	NM_001099289 DQ307286	274141	+	BC050579|CCDC138|165055|coiled-coil domain containing 138##AK125199|CCDC138|165055|coiled-coil domain containing 138##AK057307|CCDC138|165055|coiled-coil domain containing 138##NM_144978|CCDC138|165055|coiled-coil domain containing 138##BC015847|CCDC138|165055|coiled-coil domain containing 138##BC038421|CCDC138|165055|coiled-coil domain containing 138##AY170822|RANBP2|5903|RAN binding protein 2##D42063|RANBP2|5903|RAN binding protein 2##NM_006267|RANBP2|5903|RAN binding protein 2##AK296936|EDAR|10913|ectodysplasin A receptor##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3	0.997462	0.495532	denovo_WM_7:27:0.820	CTCF.p2:-63:0.496
chr4	103652256	103652400	reg1012322.p1	4.660	+	TSC_hg19_v1_chr4_+_103422822 AK291450	-229505	+	TSC_hg19_v1_chr4_+_103422737 M55643	-229566	+	TSC_hg19_v1_chr4_+_103422554 M58603	-229773	+	EU009130 TSC_hg19_v1_chr4_-_103682110 AK300015 AB209846 AK312827	29758	-	TSC_hg19_v1_chr4_-_103682126 U60337 AK291598 BC015743	29807	-	NM_005908 TSC_hg19_v1_chr4_-_103682152	29836	-	AK291450|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M55643|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##M58603|NFKB1|4790|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1##EU009130|MANBA|4126|mannosidase, beta A, lysosomal##AK300015|MANBA|4126|mannosidase, beta A, lysosomal##AB209846|MANBA|4126|mannosidase, beta A, lysosomal##AK312827|MANBA|4126|mannosidase, beta A, lysosomal##U60337|MANBA|4126|mannosidase, beta A, lysosomal##AK291598|MANBA|4126|mannosidase, beta A, lysosomal##BC015743|MANBA|4126|mannosidase, beta A, lysosomal##NM_005908|MANBA|4126|mannosidase, beta A, lysosomal	0.998928	0.0	denovo_WM_7:21:0.427	denovo_WM_7:22:0.479
chr6	41947770	41947836	reg1011748.p1	4.660	+	AB385206 CR542246 DQ891748 DQ895130 BC011616 M90814 TSC_hg19_v1_chr6_-_41909544 AK315421 AK299187 M92287 NM_001136125 NM_001760	-38304	-	TSC_hg19_v1_chr6_+_41889236 CU690756	-58536	+	TSC_hg19_v1_chr6_+_41889209 AK314147 BC007340	-58594	+	TSC_hg19_v1_chr6_-_42016453 AK303452 AB209825 AK057206 AK097856	68615	-	NM_001136017 NM_001136126	68806	-	BC033728 NM_138572 TSC_hg19_v1_chr6_+_42018261 AK057383 BC119678 BC119679 AL833401	70453	+	CR542246|CCND3|896|cyclin D3##DQ891748|CCND3|896|cyclin D3##DQ895130|CCND3|896|cyclin D3##BC011616|CCND3|896|cyclin D3##M90814|CCND3|896|cyclin D3##AK315421|CCND3|896|cyclin D3##AK299187|CCND3|896|cyclin D3##M92287|CCND3|896|cyclin D3##NM_001136125|CCND3|896|cyclin D3##NM_001760|CCND3|896|cyclin D3##AK314147|BYSL|705|bystin-like##BC007340|BYSL|705|bystin-like##AK303452|CCND3|896|cyclin D3##AB209825|CCND3|896|cyclin D3##AK057206|CCND3|896|cyclin D3##AK097856|CCND3|896|cyclin D3##NM_001136017|CCND3|896|cyclin D3##NM_001136126|CCND3|896|cyclin D3##BC033728|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##NM_138572|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AK057383|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119678|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119679|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AL833401|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa	0.996888	0.0	
chr7	17099450	17099592	reg1013754.p1	4.660	+	AY359065 BC058284 NM_176813	-177917	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-254850	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-306065	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	238748	+	TSC_hg19_v1_chr7_+_17382906 BC021696	283385	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	880528	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.997515	0.0	denovo_WM_7:-24:0.884
chr7	86777809	86777931	reg1010516.p2	4.660	+	TSC_hg19_v1_chr7_-_86688965 NM_001142749	-88892	-	AK296250 NM_152748	-182624	-	X77748 TSC_hg19_v1_chr7_+_86274130 DQ315361 DQ315362 DQ315363	-503754	+	TSC_hg19_v1_chr7_+_86781741 NM_001142326 NM_001142327 AF084530 AF202144 AF202145 AK295144 AK314622 AB209230 AK296211	3843	+	NM_021145 TSC_hg19_v1_chr7_+_86781946 BC070064	4067	+	BT006973 TSC_hg19_v1_chr7_-_86849049 BC002837 NM_024315 AK313794	71071	-	NM_001142749|KIAA1324L|222223|KIAA1324-like##AK296250|KIAA1324L|222223|KIAA1324-like##NM_152748|KIAA1324L|222223|KIAA1324-like##X77748|GRM3|2913|glutamate receptor, metabotropic 3##DQ315361|GRM3|2913|glutamate receptor, metabotropic 3##DQ315362|GRM3|2913|glutamate receptor, metabotropic 3##DQ315363|GRM3|2913|glutamate receptor, metabotropic 3##NM_001142326|DMTF1|9988|cyclin D binding myb-like transcription factor 1##NM_001142327|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AF084530|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AF202144|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AF202145|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AK295144|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AK314622|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AB209230|DMTF1|9988|cyclin D binding myb-like transcription factor 1##AK296211|DMTF1|9988|cyclin D binding myb-like transcription factor 1##NM_021145|DMTF1|9988|cyclin D binding myb-like transcription factor 1##BC070064|DMTF1|9988|cyclin D binding myb-like transcription factor 1##BT006973|C7orf23|79161|chromosome 7 open reading frame 23##BC002837|C7orf23|79161|chromosome 7 open reading frame 23##NM_024315|C7orf23|79161|chromosome 7 open reading frame 23##AK313794|C7orf23|79161|chromosome 7 open reading frame 23	1.964298	0.118701	denovo_WM_7:-30:0.976	denovo_WM_7:-46:0.976
chr9	127048324	127048504	reg1010897.p1	4.660	+	TSC_hg19_v1_chr9_+_127020588 AL832574	-27824	+	TSC_hg19_v1_chr9_+_127020519 NM_001166168 AK313071	-27891	+	TSC_hg19_v1_chr9_+_127020255 AB026289	-28150	+	TSC_hg19_v1_chr9_+_127054267 NM_001166170 NM_001166171	5845	+	TSC_hg19_v1_chr9_+_127054570 AK294614 NM_001166169	6218	+	TSC_hg19_v1_chr9_+_127119114 BC042968	70755	+	NM_001166168|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK313071|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166170|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166171|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AK294614|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001166169|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.0	0.0	
chr11	18186937	18187117	reg1012102.p2	4.659	+	BC067292 NM_054031	-44526	+	TSC_hg19_v1_chr11_-_18127617 AB489136 BC012010 AK123457 NM_138421	-59407	-	AY196345 BC106739 BC106740 X52836 AB590778 NM_004179	-124708	-	BC095509 NM_054032	7356	+	BC007026 AK312182 M81349 TSC_hg19_v1_chr11_-_18258350	71317	-	NM_006512 TSC_hg19_v1_chr11_-_18258385	71360	-	BC067292|MRGPRX3|117195|MAS-related GPR, member X3##NM_054031|MRGPRX3|117195|MAS-related GPR, member X3##AB489136|SAAL1|113174|serum amyloid A-like 1##BC012010|SAAL1|113174|serum amyloid A-like 1##AK123457|SAAL1|113174|serum amyloid A-like 1##NM_138421|SAAL1|113174|serum amyloid A-like 1##AY196345|TPH1|7166|tryptophan hydroxylase 1##BC106739|TPH1|7166|tryptophan hydroxylase 1##BC106740|TPH1|7166|tryptophan hydroxylase 1##X52836|TPH1|7166|tryptophan hydroxylase 1##NM_004179|TPH1|7166|tryptophan hydroxylase 1##BC095509|MRGPRX4|117196|MAS-related GPR, member X4##NM_054032|MRGPRX4|117196|MAS-related GPR, member X4##BC007026|SAA4|6291|serum amyloid A4, constitutive##AK312182|SAA4|6291|serum amyloid A4, constitutive##M81349|SAA4|6291|serum amyloid A4, constitutive##NM_006512|SAA4|6291|serum amyloid A4, constitutive	0.999519	0.0	
chr16	31104893	31105057	reg1011602.p2	4.659	+	AJ627035 NM_001039503	-4846	-	TSC_hg19_v1_chr16_+_31085751 BC035589	-19211	+	TSC_hg19_v1_chr16_+_31085742 NM_014699 AK304808	-19241	+	AY358456 TSC_hg19_v1_chr16_-_31106001	1000	-	AY423044 AY521634 BC000828 TSC_hg19_v1_chr16_-_31106058 BC002911	1095	-	TSC_hg19_v1_chr16_-_31106093 AK129513	1132	-	AJ627035|PRSS53|339105|protease, serine, 53##NM_001039503|PRSS53|339105|protease, serine, 53##BC035589|ZNF646|9726|zinc finger protein 646##NM_014699|ZNF646|9726|zinc finger protein 646##AK304808|ZNF646|9726|zinc finger protein 646##AY423044|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AY521634|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##BC000828|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##BC002911|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AK129513|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1	1.778681	0.0	denovo_WM_7:50:0.430	denovo_WM_7:65:0.529
chr1	8229952	8230070	reg1006861.p1	4.659	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-143613	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-143650	-	AB528431 AJ276373 DQ892137 DQ895331 BC012839 TSC_hg19_v1_chr1_-_8075752	-154296	-	NM_001080397	154378	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	254006	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	647581	-	NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AJ276373|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ892137|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ895331|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC012839|ERRFI1|54206|ERBB receptor feedback inhibitor 1##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats	0.999508	0.0	
chr2	47531014	47531158	reg1008503.p2	4.659	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-127377	-	TSC_hg19_v1_chr2_-_47403656 BC008437	-127432	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	-127436	-	NM_002354 TSC_hg19_v1_chr2_+_47596376	65256	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	65459	+	TSC_hg19_v1_chr2_+_47630218 AK304496	99118	+	NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	0.0	0.0	
chr3	119218186	119218319	reg1012795.p2	4.659	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	-779	+	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	-30427	+	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	-35783	-	M27533 BC042665 AK292129 NM_005191	60189	-	TSC_hg19_v1_chr3_+_119298355 AK304560 AK291787	80143	+	BC063883 NM_001125 TSC_hg19_v1_chr3_+_119298606	80313	+	NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##M27533|CD80|941|CD80 molecule##BC042665|CD80|941|CD80 molecule##AK292129|CD80|941|CD80 molecule##NM_005191|CD80|941|CD80 molecule##AK304560|ADPRH|141|ADP-ribosylarginine hydrolase##AK291787|ADPRH|141|ADP-ribosylarginine hydrolase##BC063883|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001125|ADPRH|141|ADP-ribosylarginine hydrolase	0.993734	0.0	denovo_WM_7:21:0.433	denovo_WM_7:22:0.433
chr4	15731723	15731859	reg1012267.p1	4.659	+	TSC_hg19_v1_chr4_+_15704753 AB175627 AB590680 BT019502	-27032	+	TSC_hg19_v1_chr4_+_15704695 AK312497 BC012095	-27096	+	NM_004334 D21878 TSC_hg19_v1_chr4_+_15704687	-27162	+	TSC_hg19_v1_chr4_+_15779950 AK303169 NM_001775 D84276 AK313268 M34461 BC007964 D84277 DQ893184 EU176777 AK297592	48180	+	BC003628 M60047 BC008910 BC018852 AK291307 TSC_hg19_v1_chr4_-_15939972	208169	-	NM_005130	208571	-	AB175627|BST1|683|bone marrow stromal cell antigen 1##BT019502|BST1|683|bone marrow stromal cell antigen 1##AK312497|BST1|683|bone marrow stromal cell antigen 1##BC012095|BST1|683|bone marrow stromal cell antigen 1##NM_004334|BST1|683|bone marrow stromal cell antigen 1##D21878|BST1|683|bone marrow stromal cell antigen 1##AK303169|CD38|952|CD38 molecule##NM_001775|CD38|952|CD38 molecule##D84276|CD38|952|CD38 molecule##AK313268|CD38|952|CD38 molecule##M34461|CD38|952|CD38 molecule##BC007964|CD38|952|CD38 molecule##D84277|CD38|952|CD38 molecule##DQ893184|CD38|952|CD38 molecule##EU176777|CD38|952|CD38 molecule##AK297592|CD38|952|CD38 molecule##BC003628|FGFBP1|9982|fibroblast growth factor binding protein 1##M60047|FGFBP1|9982|fibroblast growth factor binding protein 1##BC008910|FGFBP1|9982|fibroblast growth factor binding protein 1##BC018852|FGFBP1|9982|fibroblast growth factor binding protein 1##AK291307|FGFBP1|9982|fibroblast growth factor binding protein 1##NM_005130|FGFBP1|9982|fibroblast growth factor binding protein 1	0.0	0.170513	
chr4	68424301	68424429	reg1009467.p1	4.659	+	TSC_hg19_v1_chr4_-_68411282 NM_001812	-13087	-	TSC_hg19_v1_chr4_-_68411224 BC030695 BX648166 BC041117 AK307928 AK308170 M95724	-13157	-	CU688992 TSC_hg19_v1_chr4_-_68411171	-13242	-	TSC_hg19_v1_chr4_+_68424444 AB023483 NM_012108 AK313676 BC014958 AB528919 CU677135	120	+	TSC_hg19_v1_chr4_-_68566842 AB014773 AB463334 AM392673 EF623993	142453	-	TSC_hg19_v1_chr4_-_68566867 AL832015 AL832458 AK094969 AK314371 BC031637 BC126484 BC126486 NM_018227	142506	-	NM_001812|CENPC1|1060|centromere protein C 1##BC030695|CENPC1|1060|centromere protein C 1##BX648166|CENPC1|1060|centromere protein C 1##BC041117|CENPC1|1060|centromere protein C 1##AK307928|CENPC1|1060|centromere protein C 1##AK308170|CENPC1|1060|centromere protein C 1##M95724|CENPC1|1060|centromere protein C 1##AB023483|STAP1|26228|signal transducing adaptor family member 1##NM_012108|STAP1|26228|signal transducing adaptor family member 1##AK313676|STAP1|26228|signal transducing adaptor family member 1##BC014958|STAP1|26228|signal transducing adaptor family member 1##AB014773|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AM392673|UBA6|55236|ubiquitin-like modifier activating enzyme 6##EF623993|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832015|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832458|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK094969|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK314371|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC031637|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126484|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126486|UBA6|55236|ubiquitin-like modifier activating enzyme 6##NM_018227|UBA6|55236|ubiquitin-like modifier activating enzyme 6	0.0	0.033865	
chr8	134419898	134419995	reg1013371.p2	4.659	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-110449	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-216616	+	NM_001045556 NM_001045557	-304637	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	164151	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1288848	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1305133	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.0	0.0	
chr1	27648568	27648660	reg1009732.p2	4.658	+	TSC_hg19_v1_chr1_+_27561153 BC032523	-87452	+	TSC_hg19_v1_chr1_+_27561124 AK315564	-87487	+	NM_015023 TSC_hg19_v1_chr1_+_27561056	-87580	+	TSC_hg19_v1_chr1_+_27648669 NM_032125 AK313110 AK303821	37	+	AL136683 BC011579 BC090039 TSC_hg19_v1_chr1_+_27648745	119	+	TSC_hg19_v1_chr1_+_27648756 EU831420 EU831513 AF251699 AK222642 AK307077 BX648289	202	+	BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_032125|TMEM222|84065|transmembrane protein 222##AK313110|TMEM222|84065|transmembrane protein 222##AK303821|TMEM222|84065|transmembrane protein 222##AL136683|TMEM222|84065|transmembrane protein 222##BC011579|TMEM222|84065|transmembrane protein 222##BC090039|TMEM222|84065|transmembrane protein 222##EU831420|TMEM222|84065|transmembrane protein 222##EU831513|TMEM222|84065|transmembrane protein 222##AF251699|TMEM222|84065|transmembrane protein 222##AK222642|TMEM222|84065|transmembrane protein 222##AK307077|TMEM222|84065|transmembrane protein 222##BX648289|LOC644961|644961|actin, beta pseudogene	0.0	0.0	
chr12	8801324	8801440	reg1010637.p1	4.658	+	AB040431 BC006296 NM_020661	-35943	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-107908	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-135151	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	13914	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	14019	-	AK124368 TSC_hg19_v1_chr12_-_8815486	14100	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	0.0	0.0	
chr20	45386872	45386986	reg1012581.p2	4.658	+	AF248053 TSC_hg19_v1_chr20_+_45338287 AK055548 NM_030777 BC101657 BC113423 AK290961 AK315269 AF321240	-48692	+	TSC_hg19_v1_chr20_-_45318164 BC009727 AB017505 AB065434 NM_033550	-68708	-	TSC_hg19_v1_chr20_-_45318084 BC010637 BC035461 AB587589 AK096502 BC066309 BC019621 AK315182	-68962	-	TSC_hg19_v1_chr20_+_45523254 BC013882 NM_005244 NM_172110	136353	+	TSC_hg19_v1_chr20_+_45523505 BC008803	136579	+	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	136623	+	AF248053|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##AK055548|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##NM_030777|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##BC101657|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##BC113423|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##AK290961|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##AK315269|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##AF321240|SLC2A10|81031|solute carrier family 2 (facilitated glucose transporter), member 10##BC009727|TP53RK|112858|TP53 regulating kinase##AB017505|TP53RK|112858|TP53 regulating kinase##AB065434|TP53RK|112858|TP53 regulating kinase##NM_033550|TP53RK|112858|TP53 regulating kinase##BC010637|TP53RK|112858|TP53 regulating kinase##BC035461|TP53RK|112858|TP53 regulating kinase##AK096502|TP53RK|112858|TP53 regulating kinase##BC066309|TP53RK|112858|TP53 regulating kinase##BC019621|TP53RK|112858|TP53 regulating kinase##AK315182|TP53RK|112858|TP53 regulating kinase##BC013882|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_005244|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_172110|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC008803|EYA2|2139|eyes absent homolog 2 (Drosophila)##AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)	0.0	0.936235	CTCF.p2:-12:0.936
chr3	193855283	193855408	reg1011965.p2	4.658	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	-1390	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	-1412	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-544180	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	216729	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	235122	-	NM_004488	264649	-	AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##NM_004488|GP5|2814|glycoprotein V (platelet)	0.0	0.0	
chr4	124598456	124598615	reg1010347.p2	4.657	+	AK026960 BC063856 NM_005841	-277862	+	TSC_hg19_v1_chr4_+_124317949 AY192146 NM_199327	-280579	+	TSC_hg19_v1_chr4_+_123844255 NM_145207 AF361489 AL832175 AF479656 AK091384 AX746949 BC048217 AM392939 AM393832	-754283	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	1035279	-	NM_024582	1639031	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	3955604	+	AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##AY192146|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_199327|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_145207|SPATA5|166378|spermatogenesis associated 5##AF361489|SPATA5|166378|spermatogenesis associated 5##AL832175|SPATA5|166378|spermatogenesis associated 5##AF479656|SPATA5|166378|spermatogenesis associated 5##AK091384|SPATA5|166378|spermatogenesis associated 5##BC048217|SPATA5|166378|spermatogenesis associated 5##AM392939|SPATA5|166378|spermatogenesis associated 5##AM393832|SPATA5|166378|spermatogenesis associated 5##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)	1.296084	0.0	denovo_WM_7:-29:0.348	denovo_WM_7:-44:0.296
chr4	153558653	153558795	reg1013168.p2	4.657	+	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-101291	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-102430	-	NM_001013415 AY008274	-255060	-	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	42476	-	BC037869 NM_145720	142179	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	142297	+	AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	0.627675	0.0	denovo_WM_7:-17:0.515
chr5	44886146	44886267	reg1012251.p1	4.657	+	TSC_hg19_v1_chr5_+_44809056 AF146192 AL355715 NM_016640 AK222704 BC007735 AK222894 AL136706 AK074777 CU675783 BC002460	-77179	+	AF508782 AB002097 AF411527 BC069561 CR541665 CR541688 GQ351295 HQ258011 NM_004465 U67918 BC105023 BC105021 BC143772	-497441	-	Z50101 AB385177 AM392664 AM393615 TSC_hg19_v1_chr5_+_43609371	-1276890	+	AF064876 TSC_hg19_v1_chr5_-_45695947	809685	-	AF488549 NM_021072	810013	-	AK300860 TSC_hg19_v1_chr5_-_49737200 BC059398	4850993	-	AF146192|MRPS30|10884|mitochondrial ribosomal protein S30##AL355715|MRPS30|10884|mitochondrial ribosomal protein S30##NM_016640|MRPS30|10884|mitochondrial ribosomal protein S30##AK222704|MRPS30|10884|mitochondrial ribosomal protein S30##BC007735|MRPS30|10884|mitochondrial ribosomal protein S30##AK222894|MRPS30|10884|mitochondrial ribosomal protein S30##AL136706|MRPS30|10884|mitochondrial ribosomal protein S30##AK074777|MRPS30|10884|mitochondrial ribosomal protein S30##BC002460|MRPS30|10884|mitochondrial ribosomal protein S30##AF508782|FGF10|2255|fibroblast growth factor 10##AB002097|FGF10|2255|fibroblast growth factor 10##AF411527|FGF10|2255|fibroblast growth factor 10##BC069561|FGF10|2255|fibroblast growth factor 10##CR541665|FGF10|2255|fibroblast growth factor 10##CR541688|FGF10|2255|fibroblast growth factor 10##GQ351295|FGF10|2255|fibroblast growth factor 10##HQ258011|FGF10|2255|fibroblast growth factor 10##NM_004465|FGF10|2255|fibroblast growth factor 10##U67918|FGF10|2255|fibroblast growth factor 10##BC105023|FGF10|2255|fibroblast growth factor 10##BC105021|FGF10|2255|fibroblast growth factor 10##Z50101|NNT|23530|nicotinamide nucleotide transhydrogenase##AM392664|NNT|23530|nicotinamide nucleotide transhydrogenase##AM393615|NNT|23530|nicotinamide nucleotide transhydrogenase##AF064876|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AK300860|EMB|133418|embigin##BC059398|EMB|133418|embigin	0.0	0.0	
chrX	54224328	54224446	reg1012598.p1	4.657	+	TSC_hg19_v1_chrX_-_54209659 BC073166 AK000513 BC136413 BC144081 AY150025 AY121803 BC016138 NM_017848 NM_198456	-14706	-	NM_001184896	-152819	-	NM_001184897 NM_015107 TSC_hg19_v1_chrX_-_54070722	-153720	-	TSC_hg19_v1_chrX_-_54384446 AY352048 NM_001002838 NM_020922	160055	-	TSC_hg19_v1_chrX_+_54466843 BC007699 BC011825 NM_058163 CU680068 U92980	242461	+	AB384834 TSC_hg19_v1_chrX_-_54522017 BC034530	297601	-	BC073166|FAM120C|54954|family with sequence similarity 120C##AK000513|FAM120C|54954|family with sequence similarity 120C##BC136413|FAM120C|54954|family with sequence similarity 120C##BC144081|FAM120C|54954|family with sequence similarity 120C##AY150025|FAM120C|54954|family with sequence similarity 120C##AY121803|FAM120C|54954|family with sequence similarity 120C##BC016138|FAM120C|54954|family with sequence similarity 120C##NM_017848|FAM120C|54954|family with sequence similarity 120C##NM_198456|FAM120C|54954|family with sequence similarity 120C##NM_001184896|PHF8|23133|PHD finger protein 8##NM_001184897|PHF8|23133|PHD finger protein 8##NM_015107|PHF8|23133|PHD finger protein 8##AY352048|WNK3|65267|WNK lysine deficient protein kinase 3##NM_001002838|WNK3|65267|WNK lysine deficient protein kinase 3##NM_020922|WNK3|65267|WNK lysine deficient protein kinase 3##BC007699|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##BC011825|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##NM_058163|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##U92980|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##BC034530|FGD1|2245|FYVE, RhoGEF and PH domain containing 1	0.998388	0.0	denovo_WM_7:6:0.229	denovo_WM_7:7:0.229	denovo_WM_7:8:0.229	denovo_WM_7:9:0.229
chr11	121108024	121108174	reg1010208.p1	4.656	+	NM_005422	-134725	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	-213289	+	AB384776 NM_014619 S67803	-577072	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	55306	+	TSC_hg19_v1_chr11_+_121163484 AK096847 AK223141 AK222686	55383	+	TSC_hg19_v1_chr11_+_121163523 BC050427 NM_001024956 BC012333	55455	+	NM_005422|TECTA|7007|tectorin alpha##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK096847|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK223141|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK222686|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##BC050427|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##NM_001024956|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##BC012333|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like	0.0	0.0	
chr12	103351902	103352070	reg1000647.p2	4.656	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-465	+	L47726 NM_000277 U49897	-40606	-	TSC_hg19_v1_chr12_-_103311062 BC026251	-40923	-	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	106	+	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	537760	-	AY311388 AJ295695 NM_017564 AB052958	629075	+	AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase##BC026251|PAH|5053|phenylalanine hydroxylase##DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2	0.0	0.0	
chr14	92981769	92981897	reg1011551.p1	4.656	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-1874	+	NM_153646 AF520704 AF520705 BC069653	-191657	+	AK295059 NM_153647	-192297	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	136803	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	136990	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	233126	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.152907	0.0	
chr16	18939032	18939137	reg1007807.p1	4.656	+	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	-1353	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-126302	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-137429	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	56235	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	56474	+	AK315470 NM_016138 TSC_hg19_v1_chr16_+_19078935 BC003185 AK024291	139846	+	NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7##AK315470|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_016138|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC003185|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK024291|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)	0.992501	0.0	denovo_WM_7:-11:0.847
chr16	89472455	89472575	reg1013123.p1	4.656	+	AK293862 NM_001242885	-84975	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-121559	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-122441	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	84416	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	102299	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	154550	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.997464	0.0	
chr5	146956571	146956751	reg1011732.p1	4.656	+	BC077077 NM_001197294 TSC_hg19_v1_chr5_-_146889632	-67035	-	EU007906 CU687310 EU832163 EU832257 TSC_hg19_v1_chr5_-_146889506	-67195	-	CU691634 AB384367 EU832180 EU832273 TSC_hg19_v1_chr5_-_146833229 BC039006 D78014 AK297223 NM_001387 Y07818	-123396	-	BC003189 AB011127 TSC_hg19_v1_chr5_-_147162128 AK291280	205433	-	BC017354 TSC_hg19_v1_chr5_-_147162218	205542	-	AF273057 NM_014790 TSC_hg19_v1_chr5_-_147162254	205593	-	BC077077|DPYSL3|1809|dihydropyrimidinase-like 3##NM_001197294|DPYSL3|1809|dihydropyrimidinase-like 3##EU007906|DPYSL3|1809|dihydropyrimidinase-like 3##EU832163|DPYSL3|1809|dihydropyrimidinase-like 3##EU832257|DPYSL3|1809|dihydropyrimidinase-like 3##EU832180|DPYSL3|1809|dihydropyrimidinase-like 3##EU832273|DPYSL3|1809|dihydropyrimidinase-like 3##BC039006|DPYSL3|1809|dihydropyrimidinase-like 3##D78014|DPYSL3|1809|dihydropyrimidinase-like 3##AK297223|DPYSL3|1809|dihydropyrimidinase-like 3##NM_001387|DPYSL3|1809|dihydropyrimidinase-like 3##Y07818|DPYSL3|1809|dihydropyrimidinase-like 3##BC003189|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AB011127|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AK291280|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##BC017354|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AF273057|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##NM_014790|JAKMIP2|9832|janus kinase and microtubule interacting protein 2	0.0	0.0	
chr11	125243676	125243789	reg1011582.p2	4.655	+	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	-209106	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	-209154	+	TSC_hg19_v1_chr11_-_124981479 BC132716 BC132718 BC144270 BC144276 BC144277	-262263	-	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	122409	-	TSC_hg19_v1_chr11_+_125439294 NM_001007277 NM_004879	195563	+	TSC_hg19_v1_chr11_+_125439332 AB209820	195593	+	BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##BC132716|TMEM218|219854|transmembrane protein 218##BC132718|TMEM218|219854|transmembrane protein 218##BC144270|TMEM218|219854|transmembrane protein 218##BC144276|TMEM218|219854|transmembrane protein 218##BC144277|TMEM218|219854|transmembrane protein 218##U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_001007277|EI24|9538|etoposide induced 2.4 mRNA##NM_004879|EI24|9538|etoposide induced 2.4 mRNA##AB209820|EI24|9538|etoposide induced 2.4 mRNA	0.0	0.0	
chr1	22108583	22108763	reg1001004.p1	4.655	+	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	-112840	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	-130326	-	AB003930 TSC_hg19_v1_chr1_-_21949064	-159636	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	852	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	961	-	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	1026	-	AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48	0.0	0.0	
chr2	25241193	25241299	reg1010375.p1	4.654	+	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	-46379	-	AK294726 TSC_hg19_v1_chr2_-_25194607	-46701	-	HQ258684 AK027857 BC126235 BC144119 AF033861 NM_004036 AK122926	-99289	-	TSC_hg19_v1_chr2_+_25264954 NM_014971 AB023170	23731	+	NM_000939 NM_001035256	150312	-	TSC_hg19_v1_chr2_-_25466801 BC018214	225562	-	AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AK294726|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##HQ258684|ADCY3|109|adenylate cyclase 3##AK027857|ADCY3|109|adenylate cyclase 3##BC126235|ADCY3|109|adenylate cyclase 3##BC144119|ADCY3|109|adenylate cyclase 3##AF033861|ADCY3|109|adenylate cyclase 3##NM_004036|ADCY3|109|adenylate cyclase 3##AK122926|ADCY3|109|adenylate cyclase 3##NM_014971|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AB023170|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##NM_000939|POMC|5443|proopiomelanocortin##NM_001035256|POMC|5443|proopiomelanocortin##BC018214|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.999316	0.0	
chr3	189742931	189743044	reg1011542.p2	4.654	+	AK304127 NM_001114980 NM_001114981 NM_001114982 GQ202689 GQ202690 AF091627 AB010153 AB042841 AF075429 AF075431 AF075433	-235469	+	BC039815 NM_001114978 NM_001114979 NM_003722 AB016072 AB016073 AF116771 Y16961 CU691766 EU446669	-393728	+	AK125682 NM_198485 BC101550 BC101552	-853176	+	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	95708	-	NM_018192	95920	-	NM_001134418	97238	-	AK304127|TP63|8626|tumor protein p63##NM_001114980|TP63|8626|tumor protein p63##NM_001114981|TP63|8626|tumor protein p63##NM_001114982|TP63|8626|tumor protein p63##GQ202689|TP63|8626|tumor protein p63##GQ202690|TP63|8626|tumor protein p63##AF091627|TP63|8626|tumor protein p63##AB010153|TP63|8626|tumor protein p63##AB042841|TP63|8626|tumor protein p63##AF075429|TP63|8626|tumor protein p63##AF075431|TP63|8626|tumor protein p63##AF075433|TP63|8626|tumor protein p63##BC039815|TP63|8626|tumor protein p63##NM_001114978|TP63|8626|tumor protein p63##NM_001114979|TP63|8626|tumor protein p63##NM_003722|TP63|8626|tumor protein p63##AB016072|TP63|8626|tumor protein p63##AB016073|TP63|8626|tumor protein p63##AF116771|TP63|8626|tumor protein p63##Y16961|TP63|8626|tumor protein p63##EU446669|TP63|8626|tumor protein p63##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1##NM_001134418|LEPREL1|55214|leprecan-like 1	1.34601	0.0	denovo_WM_7:-11:0.901
chr5	130931278	130931400	reg1012578.p1	4.654	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-331539	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-331571	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-331583	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	39418	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	39480	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	39539	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.012174	0.0	
chr9	135777386	135777566	reg1010493.p2	4.654	+	AK075259 AJ011375 NM_018956	-23190	+	BC037402 BC050576 NM_152572	-23296	-	TSC_hg19_v1_chr9_+_135753719 BC012940	-23708	+	TSC_hg19_v1_chr9_-_135819985 BC121000 AB190910 BC047772	42497	-	TSC_hg19_v1_chr9_-_135820004 AK303030 AK308412 AK297326 AF013168 BC108668 AK299654 BC070032 NM_000368 NM_001162426 NM_001162427	42533	-	AY428733 NM_001135031 NM_004188	76621	+	AK075259|C9orf9|11092|chromosome 9 open reading frame 9##AJ011375|C9orf9|11092|chromosome 9 open reading frame 9##NM_018956|C9orf9|11092|chromosome 9 open reading frame 9##BC037402|AK8|158067|adenylate kinase 8##BC050576|AK8|158067|adenylate kinase 8##NM_152572|AK8|158067|adenylate kinase 8##BC012940|C9orf9|11092|chromosome 9 open reading frame 9##BC121000|TSC1|7248|tuberous sclerosis 1##AB190910|TSC1|7248|tuberous sclerosis 1##BC047772|TSC1|7248|tuberous sclerosis 1##AK303030|TSC1|7248|tuberous sclerosis 1##AK308412|TSC1|7248|tuberous sclerosis 1##AK297326|TSC1|7248|tuberous sclerosis 1##AF013168|TSC1|7248|tuberous sclerosis 1##BC108668|TSC1|7248|tuberous sclerosis 1##AK299654|TSC1|7248|tuberous sclerosis 1##BC070032|TSC1|7248|tuberous sclerosis 1##NM_000368|TSC1|7248|tuberous sclerosis 1##NM_001162426|TSC1|7248|tuberous sclerosis 1##NM_001162427|TSC1|7248|tuberous sclerosis 1##AY428733|GFI1B|8328|growth factor independent 1B transcription repressor##NM_001135031|GFI1B|8328|growth factor independent 1B transcription repressor##NM_004188|GFI1B|8328|growth factor independent 1B transcription repressor	0.0	0.901609	CTCF.p2:-69:0.902
chr13	109828879	109829040	reg1013548.p1	4.653	+	AB290159 AK127806 NM_001198950	-547390	+	AB020672 BC146791 NM_015011 AL834447	-580445	+	DQ857728 TSC_hg19_v1_chr13_+_108955871	-873142	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	609949	-	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	973776	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	1130550	-	AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1	0.99642	0.0	
chr6_qbl_hap6	4512931	4513068	reg1009168.p1	4.653	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.997076	0.0	denovo_WM_7:44:0.440
chr8	65608266	65608371	reg1011831.p2	4.653	+	TSC_hg19_v1_chr8_+_65493611 AK091333	-114654	+	NM_152414 AK293979	-115460	+	TSC_hg19_v1_chr8_+_64081201 AL831816 AK056219 BC037492 AL832335	-1527118	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	102961	-	TSC_hg19_v1_chr8_-_66546394 AK001373	938077	-	TSC_hg19_v1_chr8_-_66546404 AK304463	938088	-	AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AL831816|YTHDF3|253943|YTH domain family, member 3##AK056219|YTHDF3|253943|YTH domain family, member 3##BC037492|YTHDF3|253943|YTH domain family, member 3##AL832335|YTHDF3|253943|YTH domain family, member 3##BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1	0.0	0.165429	
chr11	106190287	106190380	reg1011740.p1	4.652	+	NM_152433 NM_198439	-241869	-	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	-241968	+	TSC_hg19_v1_chr11_-_105892952 AL834523 BC041118 AB058729 NM_032424	-297374	-	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	698755	-	AK293001 TSC_hg19_v1_chr11_-_107328552 BX649022 BX647832 BC107418 BC070142 BX648704 AK126881 NM_152434	1138206	-	AK293603 TSC_hg19_v1_chr11_-_107436464 BC015183 AK304413 AB218768 AK095523 NM_138775	1246111	-	NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AL834523|KIAA1826|84437|KIAA1826##BC041118|KIAA1826|84437|KIAA1826##AB058729|KIAA1826|84437|KIAA1826##NM_032424|KIAA1826|84437|KIAA1826##BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##AK293001|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX649022|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX647832|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC107418|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC070142|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX648704|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##AK126881|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##NM_152434|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##AK293603|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##BC015183|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK304413|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AB218768|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK095523|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##NM_138775|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)	0.99951	0.990284	CTCF.p2:-7:0.990	denovo_WM_7:-28:0.425	denovo_WM_7:-29:0.425
chr19	951586	951766	reg1009397.p1	4.652	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-25665	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-34283	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-38452	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	32658	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	48689	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	69382	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	0.0	0.0	
chr10	102801107	102801220	reg1008946.p1	4.651	+	TSC_hg19_v1_chr10_+_102792167 AK299405 BC000124	-8974	+	AK074707 TSC_hg19_v1_chr10_+_102792161	-9002	+	TSC_hg19_v1_chr10_+_102790985 NM_030971	-10174	+	TSC_hg19_v1_chr10_+_102820998 AK172864 NM_030929	19815	+	TSC_hg19_v1_chr10_+_102821745 BC007758 AY359087 AK225949 AK172862	20496	+	BC019674 NM_001085398	89739	-	AK299405|SFXN3|81855|sideroflexin 3##BC000124|SFXN3|81855|sideroflexin 3##AK074707|SFXN3|81855|sideroflexin 3##NM_030971|SFXN3|81855|sideroflexin 3##AK172864|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##NM_030929|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##BC007758|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AY359087|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK225949|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK172862|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##BC019674|TLX1NB|100038246|TLX1 neighbor##NM_001085398|TLX1NB|100038246|TLX1 neighbor	1.414223	0.558417	CTCF.p2:-22:0.558	denovo_WM_7:71:0.481	denovo_WM_7:72:0.281
chr12	133026437	133026617	reg1012744.p2	4.651	+	BC069354 AB040672 NM_001122636 BC157845 BC171844	-120670	-	AF458594 NM_021808	-335955	-	TSC_hg19_v1_chr12_+_132629014 BC071958 CU687200 DQ892518 DQ895730 BC007893	-397471	+	NM_001142641	40629	+	NM_001195520	160509	-	AF260426 TSC_hg19_v1_chr12_+_133195386 AF190822 AF190823 AF190824 AF190825 AF260427 AF260428 AF260429 AY346374 BC109200 NM_012226 NM_016318 NM_170682 NM_170683 NM_174872 NM_174873 AF109387 AF109388	168877	+	BC069354|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##AB040672|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##NM_001122636|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##BC157845|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##BC171844|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##AF458594|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##NM_021808|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##BC071958|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##DQ892518|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##DQ895730|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##BC007893|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##NM_001142641|FBRSL1|57666|fibrosin-like 1##NM_001195520|LOC100507055|100507055|uncharacterized LOC100507055##AF260426|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190822|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190823|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190824|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190825|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260427|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260428|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260429|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AY346374|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##BC109200|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_012226|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_016318|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_170682|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_170683|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_174872|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_174873|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF109387|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF109388|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2	0.0	0.0	
chr12	787724	787904	reg1006720.p4	4.651	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-15099	-	TSC_hg19_v1_chr12_-_752800 AK298043	-34995	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-35636	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	74342	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	74942	+	BC013629 TSC_hg19_v1_chr12_+_1017145	229268	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.015542	0.0	
chr19	6550142	6550288	reg1015271.p1	4.651	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-19189	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-47898	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-68432	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	40817	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	40891	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	40943	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	1.988387	0.0	denovo_WM_7:-88:0.330	denovo_WM_7:-89:0.264	denovo_WM_7:-106:0.265	denovo_WM_7:-107:0.331
chr7	28401962	28402073	reg1012470.p1	4.651	+	L05913 NM_182899	-63078	+	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	-181611	-	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	-181816	-	TSC_hg19_v1_chr7_+_28448986 BC087859	46971	+	L05515 NM_182898	50126	+	L05911 NM_004904	73216	+	L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##BC087859|LOC401317|401317|uncharacterized LOC401317##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5	0.047193	0.0	
chr7	70229592	70229748	reg1006452.p2	4.651	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1165082	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1165341	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1165834	+	TSC_hg19_v1_chr7_+_70231164 AK296981	1535	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	368118	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1572108	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	1.96433	0.0	denovo_WM_7:33:0.501	denovo_WM_7:34:0.388	denovo_WM_7:49:0.837
chr8	6893421	6893531	reg1009208.p1	4.651	+	BC093791 BC112188 BC069423 M21130 M23281 BC119706 X52053 BC027917 M26602 NM_005217 X13621 NM_001042500 NM_004084	-17677	-	BC093791 BC112188 BC069423 M21130 M26602 NM_001042500 NM_004084	-36776	-	BC093791 BC112188 BC069423 M21130 M26602 NM_001042500 NM_004084	-55886	-	BC107079 BC069690 NM_021010	20778	-	NM_001164452 NM_001164456	220949	+	NM_001164452 NM_001164456	243815	+	BC093791|DEFA1|1667|defensin, alpha 1##BC112188|DEFA1|1667|defensin, alpha 1##BC069423|DEFA1|1667|defensin, alpha 1##M21130|DEFA1|1667|defensin, alpha 1##M23281|DEFA3|1668|defensin, alpha 3, neutrophil-specific##BC119706|DEFA3|1668|defensin, alpha 3, neutrophil-specific##X52053|DEFA1|1667|defensin, alpha 1##BC027917|DEFA3|1668|defensin, alpha 3, neutrophil-specific##M26602|DEFA1|1667|defensin, alpha 1##NM_005217|DEFA3|1668|defensin, alpha 3, neutrophil-specific##X13621|DEFA3|1668|defensin, alpha 3, neutrophil-specific##NM_001042500|DEFA1B|728358|defensin, alpha 1B##NM_004084|DEFA1|1667|defensin, alpha 1##BC093791|DEFA1|1667|defensin, alpha 1##BC112188|DEFA1|1667|defensin, alpha 1##BC069423|DEFA1|1667|defensin, alpha 1##M21130|DEFA1|1667|defensin, alpha 1##M26602|DEFA1|1667|defensin, alpha 1##NM_001042500|DEFA1B|728358|defensin, alpha 1B##NM_004084|DEFA1|1667|defensin, alpha 1##BC093791|DEFA1|1667|defensin, alpha 1##BC112188|DEFA1|1667|defensin, alpha 1##BC069423|DEFA1|1667|defensin, alpha 1##M21130|DEFA1|1667|defensin, alpha 1##M26602|DEFA1|1667|defensin, alpha 1##NM_001042500|DEFA1B|728358|defensin, alpha 1B##NM_004084|DEFA1|1667|defensin, alpha 1##BC107079|DEFA5|1670|defensin, alpha 5, Paneth cell-specific##BC069690|DEFA5|1670|defensin, alpha 5, Paneth cell-specific##NM_021010|DEFA5|1670|defensin, alpha 5, Paneth cell-specific##NM_001164452|FAM90A14|645651|family with sequence similarity 90, member A14##NM_001164456|FAM90A13|441314|family with sequence similarity 90, member A13##NM_001164452|FAM90A14|645651|family with sequence similarity 90, member A14##NM_001164456|FAM90A13|441314|family with sequence similarity 90, member A13	1.982905	0.057449	denovo_WM_7:65:0.877	denovo_WM_7:80:0.927
chr15	51054867	51054957	reg1007784.p2	4.650	+	TSC_hg19_v1_chr15_-_50978995 AY032950 NM_017672	-75915	-	TSC_hg19_v1_chr15_-_50978974 AF346629	-75944	-	TSC_hg19_v1_chr15_-_50978923 AK000124	-75973	-	TSC_hg19_v1_chr15_-_51057864 BC025740 AK315651 AJ345028	2947	-	TSC_hg19_v1_chr15_-_51057895 AK075454 AY169314 NM_032802	2991	-	TSC_hg19_v1_chr15_-_51200797 AK091906	145849	-	AY032950|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##NM_017672|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AF346629|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK000124|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##BC025740|SPPL2A|84888|signal peptide peptidase-like 2A##AK315651|SPPL2A|84888|signal peptide peptidase-like 2A##AJ345028|SPPL2A|84888|signal peptide peptidase-like 2A##AK075454|SPPL2A|84888|signal peptide peptidase-like 2A##AY169314|SPPL2A|84888|signal peptide peptidase-like 2A##NM_032802|SPPL2A|84888|signal peptide peptidase-like 2A	1.857011	0.0	denovo_WM_7:10:0.401	denovo_WM_7:12:0.393	denovo_WM_7:28:0.827
chr6	12011103	12011283	reg1001012.p1	4.650	+	NM_001143948 NM_032744	-231914	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-472695	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-628653	-	NM_002114	1530	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	279400	+	TSC_hg19_v1_chr6_+_12514301 D28417	503109	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.0	0.0	
chr1	156737035	156737136	reg1010871.p1	4.649	+	NM_001126051 AK096411 AK304468 NM_001126050	-14954	-	TSC_hg19_v1_chr1_-_156721527 D16431 NM_004494	-15552	-	TSC_hg19_v1_chr1_-_156721375 AK298342 AK315514 BC018991	-15744	-	NM_005973 TSC_hg19_v1_chr1_+_156737306	207	+	TSC_hg19_v1_chr1_+_156737326 AK289872 BC010450 BC004913 X97124	262	+	AK126428 NM_001007792	48420	+	NM_001126051|HDGF|3068|hepatoma-derived growth factor##AK096411|HDGF|3068|hepatoma-derived growth factor##AK304468|HDGF|3068|hepatoma-derived growth factor##NM_001126050|HDGF|3068|hepatoma-derived growth factor##D16431|HDGF|3068|hepatoma-derived growth factor##NM_004494|HDGF|3068|hepatoma-derived growth factor##AK298342|HDGF|3068|hepatoma-derived growth factor##AK315514|HDGF|3068|hepatoma-derived growth factor##BC018991|HDGF|3068|hepatoma-derived growth factor##NM_005973|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##AK289872|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##BC010450|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##BC004913|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##X97124|PRCC|5546|papillary renal cell carcinoma (translocation-associated)##AK126428|NTRK1|4914|neurotrophic tyrosine kinase, receptor, type 1##NM_001007792|NTRK1|4914|neurotrophic tyrosine kinase, receptor, type 1	0.0	0.0	
chr15	101816668	101816848	reg1007413.p2	4.649	+	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	-24623	-	AB071402 TSC_hg19_v1_chr15_-_101791795	-25022	-	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-357246	+	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	905	-	TSC_hg19_v1_chr15_-_101835402 AB528428 CU692724 AJ130971 AJ130972 DQ892838 DQ896084 BC071717	18623	-	TSC_hg19_v1_chr15_-_101835457 AK223110 AK312200 X13482 BC022816 AK290078 AK223070 BC067846 NM_003090	18673	-	BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S##AJ130971|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AJ130972|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ892838|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ896084|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC071717|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223110|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK312200|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##X13482|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC022816|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK290078|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223070|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC067846|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##NM_003090|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'	0.0	0.0	
chr15	34516630	34516775	reg1005671.p1	4.649	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-14401	-	BC026234 AL136908 TSC_hg19_v1_chr15_-_34502237 AK293021 BC111000 AK297904	-14477	-	AK057200 NM_152595 BC130441	-122421	+	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	538	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	94276	-	AF105366 AF531258 NM_001042497 NM_133647	112342	-	BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##BC026234|C15orf29|79768|chromosome 15 open reading frame 29##AL136908|C15orf29|79768|chromosome 15 open reading frame 29##AK293021|C15orf29|79768|chromosome 15 open reading frame 29##BC111000|C15orf29|79768|chromosome 15 open reading frame 29##AK297904|C15orf29|79768|chromosome 15 open reading frame 29##AK057200|PGBD4|161779|piggyBac transposable element derived 4##NM_152595|PGBD4|161779|piggyBac transposable element derived 4##BC130441|PGBD4|161779|piggyBac transposable element derived 4##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.997645	0.0	denovo_WM_7:33:0.951
chr17	5943344	5943453	reg1013532.p2	4.649	+	AF298548 TSC_hg19_v1_chr17_-_5487785 AF310105 AB023143 BC028066 BC051787 AK310936 NM_001033053 NM_014922 NM_033004 NM_033006 NM_033007	-455599	-	AF217966 AF131825 NM_001162371 TSC_hg19_v1_chr17_-_5404327	-539082	-	AK289939 AL136906 NM_024039	-553169	+	AK309645 TSC_hg19_v1_chr17_+_5972435 AK289603	29032	+	TSC_hg19_v1_chr17_+_5973700 AL833730 NM_015253	30409	+	TSC_hg19_v1_chr17_+_5974408 BC009975	31019	+	AF298548|NLRP1|22861|NLR family, pyrin domain containing 1##AF310105|NLRP1|22861|NLR family, pyrin domain containing 1##AB023143|NLRP1|22861|NLR family, pyrin domain containing 1##AK310936|NLRP1|22861|NLR family, pyrin domain containing 1##NM_001033053|NLRP1|22861|NLR family, pyrin domain containing 1##NM_014922|NLRP1|22861|NLR family, pyrin domain containing 1##NM_033004|NLRP1|22861|NLR family, pyrin domain containing 1##NM_033006|NLRP1|22861|NLR family, pyrin domain containing 1##NM_033007|NLRP1|22861|NLR family, pyrin domain containing 1##AF217966|LOC728392|728392|uncharacterized LOC728392##AF131825|LOC728392|728392|uncharacterized LOC728392##NM_001162371|LOC728392|728392|uncharacterized LOC728392##AK289939|MIS12|79003|MIS12, MIND kinetochore complex component, homolog (S. pombe)##AL136906|MIS12|79003|MIS12, MIND kinetochore complex component, homolog (S. pombe)##NM_024039|MIS12|79003|MIS12, MIND kinetochore complex component, homolog (S. pombe)##AK309645|WSCD1|23302|WSC domain containing 1##AK289603|WSCD1|23302|WSC domain containing 1##AL833730|WSCD1|23302|WSC domain containing 1##NM_015253|WSCD1|23302|WSC domain containing 1##BC009975|WSCD1|23302|WSC domain containing 1	0.994488	0.0	denovo_WM_7:-19:0.982
chr2	102850809	102850913	reg1012194.p1	4.649	+	AF284434 NM_003854 U49065 BC107064	-47413	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	-80441	+	TSC_hg19_v1_chr2_+_102759205 X16896	-91629	+	AB012701 NM_016232 AK313967 AK303389	77130	+	BC012580 BC030975 NM_003856 AK291578 AB029084	102870	+	BC069575 BC093975 BC093977 BC143403 BC143405 NM_003855 U43672 AB590640 AY192162	128247	+	AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##X16896|IL1R1|3554|interleukin 1 receptor, type I##AB012701|IL1RL1|9173|interleukin 1 receptor-like 1##NM_016232|IL1RL1|9173|interleukin 1 receptor-like 1##AK313967|IL18R1|8809|interleukin 18 receptor 1##AK303389|IL1RL1|9173|interleukin 1 receptor-like 1##BC012580|IL1RL1|9173|interleukin 1 receptor-like 1##BC030975|IL1RL1|9173|interleukin 1 receptor-like 1##NM_003856|IL1RL1|9173|interleukin 1 receptor-like 1##AK291578|IL1RL1|9173|interleukin 1 receptor-like 1##AB029084|IL1RL1|9173|interleukin 1 receptor-like 1##BC069575|IL18R1|8809|interleukin 18 receptor 1##BC093975|IL18R1|8809|interleukin 18 receptor 1##BC093977|IL18R1|8809|interleukin 18 receptor 1##BC143403|IL18R1|8809|interleukin 18 receptor 1##BC143405|IL18R1|8809|interleukin 18 receptor 1##NM_003855|IL18R1|8809|interleukin 18 receptor 1##U43672|IL18R1|8809|interleukin 18 receptor 1##AY192162|IL18R1|8809|interleukin 18 receptor 1	0.986731	0.0	denovo_WM_7:44:0.823
chr2	43023273	43023374	reg1001207.p3	4.649	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	-3572	-	AY158687 AB528920 AB083055 BC063549 NM_148962	-32023	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-227426	+	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	430022	-	TSC_hg19_v1_chr2_-_43453736 BC020369	430407	-	TSC_hg19_v1_chr2_-_43453744 NM_006887	430419	-	CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.0	0.0	
chr4	1888983	1889086	reg1009654.p1	4.649	+	TSC_hg19_v1_chr4_+_1873169 BC052254 BC020545 BC032731	-15836	+	AK289697 TSC_hg19_v1_chr4_+_1873132 NM_001042424	-15950	+	DQ893606 AK293572 TSC_hg19_v1_chr4_-_1857827 BC014500 BC021208 AF061025 NM_012318	-31203	-	AF083386 AF083387 AF083388 AF083389 AF083390 AF083391 NM_007331 NM_133330 NM_133331 NM_133335	5474	+	AF071593 AF071594 NM_133334 AY694128 AB384560	13332	+	AB029013 TSC_hg19_v1_chr4_+_1953907	64836	+	BC052254|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##BC020545|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##BC032731|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AK289697|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_001042424|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##DQ893606|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##AK293572|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##BC014500|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##BC021208|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##AF061025|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##NM_012318|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##AF083386|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF083387|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF083388|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF083389|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF083390|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF083391|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_007331|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_133330|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_133331|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_133335|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF071593|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AF071594|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_133334|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AY694128|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##AB029013|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1	0.956511	0.0	denovo_WM_7:22:0.930
chrX	19701048	19701130	reg1011375.p2	4.649	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-12033	-	NM_001001671	-167711	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-339007	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	116786	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	116823	-	TSC_hg19_v1_chrX_-_19905450 AY542305	204374	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.979081	0.0	denovo_WM_7:-51:0.804	denovo_WM_7:-68:0.817
chr10	7998621	7998767	reg1016062.p1	4.648	+	AJ292190 NM_031923 AL117661	-137986	+	TSC_hg19_v1_chr10_+_7860467 BC105593 BC073884 BC017320 BC045106 AK307657 AK307521 BC062352 BC028077	-138218	+	TSC_hg19_v1_chr10_+_7830141 NM_001001973 NM_005174 BC000931 BC020824 AK292896 AK296803 D16562 D16563 BC016812 AK294061 BC010380 BC000470 BC013394 BC013865 CU677727 CR457403 BC026049	-168554	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	97955	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	98081	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	98789	+	AJ292190|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##NM_031923|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AL117661|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC105593|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC073884|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC017320|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC045106|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AK307657|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##AK307521|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC062352|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##BC028077|TAF3|83860|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa##NM_001001973|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##NM_005174|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC000931|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC020824|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK292896|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK296803|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##D16562|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##D16563|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC016812|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##AK294061|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC010380|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC000470|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC013394|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC013865|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##CR457403|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC026049|ATP5C1|509|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3	0.0	0.0	
chr11	125464987	125465158	reg1010609.p2	4.648	+	TSC_hg19_v1_chr11_+_125462752 BX649102 BC020965 AK295892	-2315	+	TSC_hg19_v1_chr11_+_125462746 AK308902	-2326	+	TSC_hg19_v1_chr11_+_125462736 L47337 NM_152713 AK290040 AK290657 AX799092 L38961	-2334	+	NM_001114121 NM_001114122 NM_001244846	29958	+	TSC_hg19_v1_chr11_+_125495874 BC004202 AK293143 AK299783	30805	+	AK292549 NM_001274 BC017575	31157	+	BX649102|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##BC020965|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK295892|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK308902|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##L47337|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##NM_152713|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK290040|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##AK290657|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##L38961|STT3A|3703|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)##NM_001114121|CHEK1|1111|checkpoint kinase 1##NM_001114122|CHEK1|1111|checkpoint kinase 1##NM_001244846|CHEK1|1111|checkpoint kinase 1##BC004202|CHEK1|1111|checkpoint kinase 1##AK293143|CHEK1|1111|checkpoint kinase 1##AK299783|CHEK1|1111|checkpoint kinase 1##AK292549|CHEK1|1111|checkpoint kinase 1##NM_001274|CHEK1|1111|checkpoint kinase 1##BC017575|CHEK1|1111|checkpoint kinase 1	0.994336	0.0	denovo_WM_7:-5:0.769
chr12	104226241	104226380	reg1012090.p1	4.648	+	AY311388 AJ295695 NM_017564 AB052958	-245249	+	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	-336564	-	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	-874218	+	AB032773 TSC_hg19_v1_chr12_-_104234857	8514	-	TSC_hg19_v1_chr12_-_104234976 BC052293 NM_001031701	8669	-	TSC_hg19_v1_chr12_+_104324159 AJ890084 AK025459	97848	+	AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3##BC052293|NT5DC3|51559|5'-nucleotidase domain containing 3##NM_001031701|NT5DC3|51559|5'-nucleotidase domain containing 3##AJ890084|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1##AK025459|HSP90B1|7184|heat shock protein 90kDa beta (Grp94), member 1	0.216625	0.0	
chr13	88826537	88826685	reg1011384.p1	4.648	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-501742	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-2453172	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-4370111	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	3224293	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	5052816	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	6305215	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	0.99708	0.0	denovo_WM_7:-16:0.793
chr17	4612926	4613106	reg1009792.p1	4.648	+	TSC_hg19_v1_chr17_-_4607431 AK299084 NM_014389	-5485	-	TSC_hg19_v1_chr17_-_4607422 AK291163	-5591	-	TSC_hg19_v1_chr17_-_4607415 AK293838	-5599	-	TSC_hg19_v1_chr17_+_4613926 NM_004313 NM_199004 AK297059 AK097542	838	+	TSC_hg19_v1_chr17_+_4613946 BC007427 BC067368 AF106941 CR749218 AB209786 AK290951 AK297181 BC095450 DQ893226 DQ896556 EU176778 AB527599 CR450310 DQ664180 EU883572 Z11501 BC039066	962	+	BC070377 NM_001001683 TSC_hg19_v1_chr17_+_4634722 AF161414	21720	+	AK299084|PELP1|27043|proline, glutamate and leucine rich protein 1##NM_014389|PELP1|27043|proline, glutamate and leucine rich protein 1##AK291163|PELP1|27043|proline, glutamate and leucine rich protein 1##AK293838|PELP1|27043|proline, glutamate and leucine rich protein 1##NM_004313|ARRB2|409|arrestin, beta 2##NM_199004|ARRB2|409|arrestin, beta 2##AK297059|ARRB2|409|arrestin, beta 2##AK097542|ARRB2|409|arrestin, beta 2##BC007427|ARRB2|409|arrestin, beta 2##BC067368|ARRB2|409|arrestin, beta 2##AF106941|ARRB2|409|arrestin, beta 2##CR749218|ARRB2|409|arrestin, beta 2##AB209786|ARRB2|409|arrestin, beta 2##AK290951|ARRB2|409|arrestin, beta 2##AK297181|ARRB2|409|arrestin, beta 2##BC095450|ARRB2|409|arrestin, beta 2##DQ893226|ARRB2|409|arrestin, beta 2##DQ896556|ARRB2|409|arrestin, beta 2##EU176778|ARRB2|409|arrestin, beta 2##CR450310|ARRB2|409|arrestin, beta 2##DQ664180|ARRB2|409|arrestin, beta 2##EU883572|ARRB2|409|arrestin, beta 2##Z11501|ARRB2|409|arrestin, beta 2##BC039066|ARRB2|409|arrestin, beta 2##BC070377|MED11|400569|mediator complex subunit 11##NM_001001683|MED11|400569|mediator complex subunit 11##AF161414|MED11|400569|mediator complex subunit 11	1.952616	0.0	denovo_WM_7:-54:0.322	denovo_WM_7:-55:0.247	denovo_WM_7:-56:0.324	denovo_WM_7:-72:0.328	denovo_WM_7:-73:0.330	denovo_WM_7:-74:0.330
chr3	197186457	197186637	reg1012570.p1	4.648	+	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	-161073	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	-161614	-	AK294855 NM_001204387 NM_001204388	-275546	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	96295	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	113654	-	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	168206	-	BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene	0.0	0.0	
chr1	23704862	23705023	reg1011330.p2	4.647	+	TSC_hg19_v1_chr1_-_23696358 NM_001077195	-8630	-	TSC_hg19_v1_chr1_+_23695456 BC054115 BC068594 AK074989	-9447	+	CU691148 EU446536 TSC_hg19_v1_chr1_-_23694804 AK308173 BC056400 AK092364 AX747503 AL834485 NM_030634	-10244	-	AB587445 EU446905 TSC_hg19_v1_chr1_-_23751239 BC041613 AY540752 AK027024 NM_003196 AK290272 AK300707 AK310039	46266	-	CU687420 TSC_hg19_v1_chr1_-_23810673 AB056749 AK092291 AK295100 AX747456 AK299359 BC060786	105724	-	TSC_hg19_v1_chr1_-_23810732 NM_001143778 NM_017707	105795	-	NM_001077195|ZNF436|80818|zinc finger protein 436##BC054115|C1orf213|148898|chromosome 1 open reading frame 213##BC068594|C1orf213|148898|chromosome 1 open reading frame 213##AK074989|C1orf213|148898|chromosome 1 open reading frame 213##EU446536|ZNF436|80818|zinc finger protein 436##AK308173|ZNF436|80818|zinc finger protein 436##BC056400|ZNF436|80818|zinc finger protein 436##AK092364|ZNF436|80818|zinc finger protein 436##AL834485|ZNF436|80818|zinc finger protein 436##NM_030634|ZNF436|80818|zinc finger protein 436##EU446905|TCEA3|6920|transcription elongation factor A (SII), 3##BC041613|TCEA3|6920|transcription elongation factor A (SII), 3##AY540752|TCEA3|6920|transcription elongation factor A (SII), 3##AK027024|TCEA3|6920|transcription elongation factor A (SII), 3##NM_003196|TCEA3|6920|transcription elongation factor A (SII), 3##AK290272|TCEA3|6920|transcription elongation factor A (SII), 3##AK300707|TCEA3|6920|transcription elongation factor A (SII), 3##AK310039|TCEA3|6920|transcription elongation factor A (SII), 3##AB056749|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##AK092291|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##AK295100|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##AK299359|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##BC060786|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##NM_001143778|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##NM_017707|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	0.465019	0.0	denovo_WM_7:-78:0.465
chr15	42511585	42511708	reg1011171.p2	4.647	+	TSC_hg19_v1_chr15_-_42500503 BC068559 AF281052 BX537404 NM_015289	-11127	-	TSC_hg19_v1_chr15_-_42500479 AF280814 CU686671 AM392538 AM393769 AB018313	-11239	-	BC111481 BC035335 AK122623 BC142682 BC146648 BC131531 AK304368 AK172836 NM_213600	-62843	-	CU686720 CU675121 TSC_hg19_v1_chr15_-_42565627 AK290150 BC069240 AK290484 AK309954 AK074870 AK289591 AK309915 BC005335 AF132733 NM_001110503 NM_015497	53967	-	TSC_hg19_v1_chr15_+_42565784 AK074330	54173	+	NM_198141 AK301467 AK074037 BC059406 TSC_hg19_v1_chr15_+_42566644 BC093833 BC112051 AF545045 AF545046 AB527148 AM392591 AM393467 BC151223	54875	+	BC068559|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##AF281052|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##BX537404|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##NM_015289|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##AF280814|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##AM392538|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##AM393769|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##AB018313|VPS39|23339|vacuolar protein sorting 39 homolog (S. cerevisiae)##BC111481|PLA2G4F|255189|phospholipase A2, group IVF##BC035335|PLA2G4F|255189|phospholipase A2, group IVF##AK122623|PLA2G4F|255189|phospholipase A2, group IVF##BC142682|PLA2G4F|255189|phospholipase A2, group IVF##BC146648|PLA2G4F|255189|phospholipase A2, group IVF##BC131531|PLA2G4F|255189|phospholipase A2, group IVF##AK304368|PLA2G4F|255189|phospholipase A2, group IVF##AK172836|PLA2G4F|255189|phospholipase A2, group IVF##NM_213600|PLA2G4F|255189|phospholipase A2, group IVF##AK290150|TMEM87A|25963|transmembrane protein 87A##BC069240|TMEM87A|25963|transmembrane protein 87A##AK290484|TMEM87A|25963|transmembrane protein 87A##AK309954|TMEM87A|25963|transmembrane protein 87A##AK074870|TMEM87A|25963|transmembrane protein 87A##AK289591|TMEM87A|25963|transmembrane protein 87A##AK309915|TMEM87A|25963|transmembrane protein 87A##BC005335|TMEM87A|25963|transmembrane protein 87A##AF132733|TMEM87A|25963|transmembrane protein 87A##NM_001110503|TMEM87A|25963|transmembrane protein 87A##NM_015497|TMEM87A|25963|transmembrane protein 87A##AK074330|GANC|2595|glucosidase, alpha; neutral C##NM_198141|GANC|2595|glucosidase, alpha; neutral C##AK301467|GANC|2595|glucosidase, alpha; neutral C##AK074037|GANC|2595|glucosidase, alpha; neutral C##BC059406|GANC|2595|glucosidase, alpha; neutral C##BC093833|GANC|2595|glucosidase, alpha; neutral C##BC112051|GANC|2595|glucosidase, alpha; neutral C##AF545045|GANC|2595|glucosidase, alpha; neutral C##AF545046|GANC|2595|glucosidase, alpha; neutral C##AM392591|GANC|2595|glucosidase, alpha; neutral C##AM393467|GANC|2595|glucosidase, alpha; neutral C##BC151223|GANC|2595|glucosidase, alpha; neutral C	0.0	0.0	
chr17	4237104	4237222	reg1012241.p1	4.647	+	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-70012	-	TSC_hg19_v1_chr17_+_4046995 AK313088 AK172844 BC020263 CU690822 DQ891696 DQ894877	-190154	+	TSC_hg19_v1_chr17_+_4046490 NM_144611 BC051697	-190680	+	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	32548	-	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	32745	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	100079	+	AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK313088|CYB5D2|124936|cytochrome b5 domain containing 2##AK172844|CYB5D2|124936|cytochrome b5 domain containing 2##BC020263|CYB5D2|124936|cytochrome b5 domain containing 2##DQ891696|CYB5D2|124936|cytochrome b5 domain containing 2##DQ894877|CYB5D2|124936|cytochrome b5 domain containing 2##NM_144611|CYB5D2|124936|cytochrome b5 domain containing 2##BC051697|CYB5D2|124936|cytochrome b5 domain containing 2##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)	0.949599	0.0	denovo_WM_7:-40:0.950
chr3	102767261	102767379	reg1010922.p1	4.647	+	AY090780 NM_175056 BC143817	-613453	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-1198946	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-1220360	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	2318260	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	2318502	+	CR749655 TSC_hg19_v1_chr3_-_105421064	2653734	-	AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b	0.998467	0.0	denovo_WM_7:31:0.789
chr7	74959004	74959156	reg1012353.p1	4.646	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-91560	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-450706	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-469388	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	29490	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	65885	+	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	80574	+	NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1	0.991806	0.0	denovo_WM_7:31:0.503	denovo_WM_7:34:0.335
chr8	115120292	115120414	reg1010994.p2	4.646	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-671224	-	AB114605 NM_198124	-730972	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-4133387	-	TSC_hg19_v1_chr8_-_116680208 AK304046	1559867	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	1560812	-	TSC_hg19_v1_chr8_-_116681365 AF183810	1560982	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.995829	0.0	denovo_WM_7:46:0.815
chr8	80587430	80587583	reg1009206.p1	4.646	+	AK292737 TSC_hg19_v1_chr8_+_80523376 BC006302 S82024 AB528346 BT020034 CR456833 DQ892719 DQ895968 CU675343	-64103	+	TSC_hg19_v1_chr8_+_80523354 AK297594 AK308557 AK297485	-64147	+	AK299500 TSC_hg19_v1_chr8_+_80523339	-64167	+	AF311883 BT020065 AB489173 CU674904 AF151522 AF176422 AJ272214 BC001873 AK074641 AK313271 AF232239 TSC_hg19_v1_chr8_-_80680006 AK092437 AK226041 AF254637 NM_001040708 NM_012258	92491	-	AF070663 TSC_hg19_v1_chr8_-_80942495 AK026506 AK223069 AK315739 BC010150 NM_014018	354996	-	AF202897 EF152584 NM_001025252 GQ499324 GQ499325 GQ499326 GQ499327 GQ499328	405523	-	AK292737|STMN2|11075|stathmin-like 2##BC006302|STMN2|11075|stathmin-like 2##S82024|STMN2|11075|stathmin-like 2##BT020034|STMN2|11075|stathmin-like 2##CR456833|STMN2|11075|stathmin-like 2##DQ892719|STMN2|11075|stathmin-like 2##DQ895968|STMN2|11075|stathmin-like 2##AK297594|STMN2|11075|stathmin-like 2##AK308557|STMN2|11075|stathmin-like 2##AK297485|STMN2|11075|stathmin-like 2##AK299500|STMN2|11075|stathmin-like 2##AF311883|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BT020065|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF151522|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF176422|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AJ272214|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##BC001873|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK074641|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK313271|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF232239|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK092437|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AK226041|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF254637|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_001040708|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##NM_012258|HEY1|23462|hairy/enhancer-of-split related with YRPW motif 1##AF070663|MRPS28|28957|mitochondrial ribosomal protein S28##AK026506|MRPS28|28957|mitochondrial ribosomal protein S28##AK223069|MRPS28|28957|mitochondrial ribosomal protein S28##AK315739|MRPS28|28957|mitochondrial ribosomal protein S28##BC010150|MRPS28|28957|mitochondrial ribosomal protein S28##NM_014018|MRPS28|28957|mitochondrial ribosomal protein S28##AF202897|TPD52|7163|tumor protein D52##EF152584|TPD52|7163|tumor protein D52##NM_001025252|TPD52|7163|tumor protein D52##GQ499324|TPD52|7163|tumor protein D52##GQ499325|TPD52|7163|tumor protein D52##GQ499326|TPD52|7163|tumor protein D52##GQ499327|TPD52|7163|tumor protein D52##GQ499328|TPD52|7163|tumor protein D52	0.0	0.0	
chr10	14968662	14968767	reg1007392.p1	4.645	+	NM_001193424 NM_001193426 BC029360 TSC_hg19_v1_chr10_+_14920864 NM_001193425 NM_001193427 AK222565 AK225369 AK027067 CU688630 BC007754 NM_024670	-47875	+	TSC_hg19_v1_chr10_+_14880343 AF143723 AK292323 AB528152 AB587406	-88343	+	TSC_hg19_v1_chr10_+_14880335 AF112210 BC119690 BC119691	-88376	+	CU692508 TSC_hg19_v1_chr10_-_14996096 BC108276 AK022922 BC022254 AF395747 AF395748 AF395749 AF395750 AF395751 AF395752 AJ296101 BC009185 BX648858 AK021422 AK290598 AK307912 NM_001033855 NM_001033857 NM_001033858 NM_022487	27340	-	NM_001080836	32723	+	NM_001039702 NM_018324 BC050372 AK001844 AK001968	117213	+	NM_001193424|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193426|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC029360|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193425|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193427|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK222565|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK225369|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK027067|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC007754|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_024670|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AF143723|HSPA14|51182|heat shock 70kDa protein 14##AK292323|HSPA14|51182|heat shock 70kDa protein 14##AF112210|HSPA14|51182|heat shock 70kDa protein 14##BC119690|HSPA14|51182|heat shock 70kDa protein 14##BC119691|HSPA14|51182|heat shock 70kDa protein 14##BC108276|DCLRE1C|64421|DNA cross-link repair 1C##AK022922|DCLRE1C|64421|DNA cross-link repair 1C##BC022254|DCLRE1C|64421|DNA cross-link repair 1C##AF395747|DCLRE1C|64421|DNA cross-link repair 1C##AF395748|DCLRE1C|64421|DNA cross-link repair 1C##AF395749|DCLRE1C|64421|DNA cross-link repair 1C##AF395750|DCLRE1C|64421|DNA cross-link repair 1C##AF395751|DCLRE1C|64421|DNA cross-link repair 1C##AF395752|DCLRE1C|64421|DNA cross-link repair 1C##AJ296101|DCLRE1C|64421|DNA cross-link repair 1C##BC009185|DCLRE1C|64421|DNA cross-link repair 1C##BX648858|DCLRE1C|64421|DNA cross-link repair 1C##AK021422|DCLRE1C|64421|DNA cross-link repair 1C##AK290598|DCLRE1C|64421|DNA cross-link repair 1C##AK307912|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033855|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033857|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033858|DCLRE1C|64421|DNA cross-link repair 1C##NM_022487|DCLRE1C|64421|DNA cross-link repair 1C##NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase	1.686294	0.0	denovo_WM_7:3:0.640	denovo_WM_7:-47:0.313	denovo_WM_7:-48:0.313	denovo_WM_7:-49:0.313
chr20	33002916	33003096	reg1011477.p1	4.645	+	TSC_hg19_v1_chr20_+_32951078 NM_031483 AK297809 AK304090 AK315212 BC011571 AB056663	-51914	+	AK097610 NM_001161766	-103399	-	BT006697 CU679982 DQ890569 DQ891701 DQ893730 DQ895397 TSC_hg19_v1_chr20_-_32891162 M61832 M61831 BC010018 BC011606 AK300014 AK316180 AK290422 AK309204 NM_000687	-111862	-	TSC_hg19_v1_chr20_+_33104226 NM_014183 AF132750 BC002481 AF161511 AK294214 AF165516	101210	+	NM_181509	131685	+	TSC_hg19_v1_chr20_+_33146525 NM_032514 AF276658 BC015810 AL833855 AB528175 BT007452 DQ893641 DQ895536 AM392590	143580	+	NM_031483|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK297809|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK304090|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK315212|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##BC011571|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AB056663|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK097610|AHCY|191|adenosylhomocysteinase##NM_001161766|AHCY|191|adenosylhomocysteinase##BT006697|AHCY|191|adenosylhomocysteinase##DQ890569|AHCY|191|adenosylhomocysteinase##DQ891701|AHCY|191|adenosylhomocysteinase##DQ893730|AHCY|191|adenosylhomocysteinase##DQ895397|AHCY|191|adenosylhomocysteinase##M61832|AHCY|191|adenosylhomocysteinase##M61831|AHCY|191|adenosylhomocysteinase##BC010018|AHCY|191|adenosylhomocysteinase##BC011606|AHCY|191|adenosylhomocysteinase##AK300014|AHCY|191|adenosylhomocysteinase##AK316180|AHCY|191|adenosylhomocysteinase##AK290422|AHCY|191|adenosylhomocysteinase##AK309204|AHCY|191|adenosylhomocysteinase##NM_000687|AHCY|191|adenosylhomocysteinase##NM_014183|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF132750|DYNLRB1|83658|dynein, light chain, roadblock-type 1##BC002481|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF161511|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AK294214|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF165516|DYNLRB1|83658|dynein, light chain, roadblock-type 1##NM_181509|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##NM_032514|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AF276658|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BC015810|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AL833855|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BT007452|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ893641|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ895536|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AM392590|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha	0.0	0.0	
chr22	18111643	18111799	reg1007840.p1	4.645	+	TSC_hg19_v1_chr22_+_18111627 AF246665	-82	+	TSC_hg19_v1_chr22_-_18111536 NM_001039366 NM_001039367 NM_001696	-168	-	AK315941 TSC_hg19_v1_chr22_-_18111516 AK294623	-207	-	CR456521 TSC_hg19_v1_chr22_+_18121529 NM_015367 AK056248 AK294286 AK314489 AK291449	9769	+	TSC_hg19_v1_chr22_+_18121576 AL831982 BC007658	9844	+	AF250233 AK094795 BC036364 NM_001244572 NM_197966 TSC_hg19_v1_chr22_-_18256811	145059	-	AF246665|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##NM_001039366|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##NM_001039367|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##NM_001696|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##AK315941|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##AK294623|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456521|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##NM_015367|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK056248|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK294286|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK314489|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK291449|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AL831982|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##BC007658|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AF250233|BID|637|BH3 interacting domain death agonist##AK094795|BID|637|BH3 interacting domain death agonist##BC036364|BID|637|BH3 interacting domain death agonist##NM_001244572|BID|637|BH3 interacting domain death agonist##NM_197966|BID|637|BH3 interacting domain death agonist	0.0	0.0	
chr4	22743202	22743274	reg1006950.p1	4.645	+	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	-48646	+	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	-225684	-	NM_147182 TSC_hg19_v1_chr4_-_21950396	-792854	-	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1148415	-	AF279891 TSC_hg19_v1_chr4_-_24586127	1842838	-	TSC_hg19_v1_chr4_-_24586154 AK303506 BC035974	1842922	-	BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##NM_147182|KCNIP4|80333|Kv channel interacting protein 4##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF279891|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##AK303506|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15##BC035974|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15	1.187517	0.0	denovo_WM_7:4:0.248	denovo_WM_7:5:0.248	denovo_WM_7:6:0.236	denovo_WM_7:7:0.211
chr17	41449872	41450027	reg1012674.p2	4.644	+	TSC_hg19_v1_chr17_+_41363905 AK056132 AK290387 AK299974 AK301571 NM_145041	-86070	+	TSC_hg19_v1_chr17_+_41323230 AK299328 AK290005 AK297425 BC012591 X76952 NM_005899 BC009808 AY450308	-126727	+	TSC_hg19_v1_chr17_+_41322538 D30756 NM_031862 AF227189 NM_031858	-127456	+	AL832479 TSC_hg19_v1_chr17_-_41465694 AK123585 AK311685	15741	-	TSC_hg19_v1_chr17_+_41476360 NM_001661 AK314951 BC000043 AB060692 L38490	26418	+	AK294046 TSC_hg19_v1_chr17_+_41561351 BC020697 AK303319 D50487 NM_004941 AK291664	111348	+	AK056132|TMEM106A|113277|transmembrane protein 106A##AK290387|TMEM106A|113277|transmembrane protein 106A##AK299974|TMEM106A|113277|transmembrane protein 106A##AK301571|TMEM106A|113277|transmembrane protein 106A##NM_145041|TMEM106A|113277|transmembrane protein 106A##AK299328|NBR1|4077|neighbor of BRCA1 gene 1##AK290005|NBR1|4077|neighbor of BRCA1 gene 1##AK297425|NBR1|4077|neighbor of BRCA1 gene 1##X76952|NBR1|4077|neighbor of BRCA1 gene 1##NM_005899|NBR1|4077|neighbor of BRCA1 gene 1##BC009808|NBR1|4077|neighbor of BRCA1 gene 1##AY450308|NBR1|4077|neighbor of BRCA1 gene 1##D30756|NBR1|4077|neighbor of BRCA1 gene 1##NM_031862|NBR1|4077|neighbor of BRCA1 gene 1##AF227189|NBR1|4077|neighbor of BRCA1 gene 1##NM_031858|NBR1|4077|neighbor of BRCA1 gene 1##AL832479|LOC100130581|100130581|uncharacterized LOC100130581##AK123585|LOC100130581|100130581|uncharacterized LOC100130581##AK311685|LOC100130581|100130581|uncharacterized LOC100130581##NM_001661|ARL4D|379|ADP-ribosylation factor-like 4D##AK314951|ARL4D|379|ADP-ribosylation factor-like 4D##BC000043|ARL4D|379|ADP-ribosylation factor-like 4D##AB060692|ARL4D|379|ADP-ribosylation factor-like 4D##L38490|ARL4D|379|ADP-ribosylation factor-like 4D##AK294046|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##BC020697|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK303319|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##D50487|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##NM_004941|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK291664|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8	0.0	0.0	
chr17	4852774	4852879	reg1011288.p1	4.644	+	TSC_hg19_v1_chr17_-_4851828 BC057828	-982	-	TSC_hg19_v1_chr17_-_4851824 BC006768 BC013439 BC002475 J03191 BC015164 AK312168 D28377 NM_005022	-1016	-	BT007001 CR407670 GU727630 DQ891100 DQ894282 AB464067 TSC_hg19_v1_chr17_-_4851739	-1101	-	NM_001193503 NM_001976 NM_053013 TSC_hg19_v1_chr17_+_4854406 AK300662 AK300673 AK300709 AK309864 BC017249	1578	+	BC007819 BC011934 TSC_hg19_v1_chr17_-_4871113 AF047437 AK312174 NM_004890	18285	-	AL831849 NM_001171167 NM_001171168 TSC_hg19_v1_chr17_-_4890732	37874	-	BC057828|PFN1|5216|profilin 1##BC006768|PFN1|5216|profilin 1##BC013439|PFN1|5216|profilin 1##BC002475|PFN1|5216|profilin 1##J03191|PFN1|5216|profilin 1##BC015164|PFN1|5216|profilin 1##AK312168|PFN1|5216|profilin 1##D28377|PFN1|5216|profilin 1##NM_005022|PFN1|5216|profilin 1##BT007001|PFN1|5216|profilin 1##CR407670|PFN1|5216|profilin 1##GU727630|PFN1|5216|profilin 1##DQ891100|PFN1|5216|profilin 1##DQ894282|PFN1|5216|profilin 1##NM_001193503|ENO3|2027|enolase 3 (beta, muscle)##NM_001976|ENO3|2027|enolase 3 (beta, muscle)##NM_053013|ENO3|2027|enolase 3 (beta, muscle)##AK300662|ENO3|2027|enolase 3 (beta, muscle)##AK300673|ENO3|2027|enolase 3 (beta, muscle)##AK300709|ENO3|2027|enolase 3 (beta, muscle)##AK309864|ENO3|2027|enolase 3 (beta, muscle)##BC017249|ENO3|2027|enolase 3 (beta, muscle)##BC007819|SPAG7|9552|sperm associated antigen 7##BC011934|SPAG7|9552|sperm associated antigen 7##AF047437|SPAG7|9552|sperm associated antigen 7##AK312174|SPAG7|9552|sperm associated antigen 7##NM_004890|SPAG7|9552|sperm associated antigen 7##AL831849|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171167|CAMTA2|23125|calmodulin binding transcription activator 2##NM_001171168|CAMTA2|23125|calmodulin binding transcription activator 2	0.0	0.0	
chr20	57569578	57569678	reg1010285.p1	4.644	+	TSC_hg19_v1_chr20_+_57556329 BC014952 BX647417 AJ238379 AF161479 AB528731 AK023927 AK023310 AK001316	-13279	+	TSC_hg19_v1_chr20_+_57556319 AK293410 AK304310 NM_198976	-13321	+	TSC_hg19_v1_chr20_+_57470682 M77026	-98964	+	AF009923 BT019915 CU692072 AM392668 AB528116 AF073890 AF136273 BC025419 BC042168 TSC_hg19_v1_chr20_-_57582302	12599	-	TSC_hg19_v1_chr20_-_57582305 AK314931 NM_001336	12677	-	AJ292757 NM_030773	24680	+	BC014952|TH1L|51497|TH1-like (Drosophila)##BX647417|TH1L|51497|TH1-like (Drosophila)##AJ238379|TH1L|51497|TH1-like (Drosophila)##AF161479|TH1L|51497|TH1-like (Drosophila)##AK023927|TH1L|51497|TH1-like (Drosophila)##AK023310|TH1L|51497|TH1-like (Drosophila)##AK001316|TH1L|51497|TH1-like (Drosophila)##AK293410|TH1L|51497|TH1-like (Drosophila)##AK304310|TH1L|51497|TH1-like (Drosophila)##NM_198976|TH1L|51497|TH1-like (Drosophila)##M77026|GNAS|2778|GNAS complex locus##AF009923|CTSZ|1522|cathepsin Z##BT019915|CTSZ|1522|cathepsin Z##AM392668|CTSZ|1522|cathepsin Z##AF073890|CTSZ|1522|cathepsin Z##AF136273|CTSZ|1522|cathepsin Z##BC025419|CTSZ|1522|cathepsin Z##BC042168|CTSZ|1522|cathepsin Z##AK314931|CTSZ|1522|cathepsin Z##NM_001336|CTSZ|1522|cathepsin Z##AJ292757|TUBB1|81027|tubulin, beta 1 class VI##NM_030773|TUBB1|81027|tubulin, beta 1 class VI	0.987471	0.0	denovo_WM_7:0:0.236	denovo_WM_7:0:0.236	denovo_WM_7:-1:0.236	denovo_WM_7:-2:0.236
chr22	39784244	39784404	reg1010064.p1	4.644	+	AJ002303 NM_145738	-24150	+	TSC_hg19_v1_chr22_+_39745981 NM_004711 NM_145731 BC000731 AK295863 CR456590 AK289507 AB209372 CU013190 CU013478 AB587338 AJ002304 AJ002305 BT007135 CU674372	-38419	+	BC014017 BC013674 BC013861 BC015032 BC015767 BC088373 BC063662 BC071666 CR456566 BC006483 BC012146 BC012786 TSC_hg19_v1_chr22_-_39715629 AK092695 AK297711 AK315693 AX747675 BC008492 BC107711 D28415 NM_000967 NM_001033853	-68685	-	BC050554 NM_006116 NM_153497 TSC_hg19_v1_chr22_+_39795796 AK296314 BC038582 AF425640 AK312456 U49928	11446	+	TSC_hg19_v1_chr22_+_39795812 AK291668 AK316004 AK308903 AB591024 CU690722	11487	+	TSC_hg19_v1_chr22_+_39853325 NM_002409	68996	+	AJ002303|SYNGR1|9145|synaptogyrin 1##NM_145738|SYNGR1|9145|synaptogyrin 1##NM_004711|SYNGR1|9145|synaptogyrin 1##NM_145731|SYNGR1|9145|synaptogyrin 1##BC000731|SYNGR1|9145|synaptogyrin 1##AK295863|SYNGR1|9145|synaptogyrin 1##CR456590|SYNGR1|9145|synaptogyrin 1##AK289507|SYNGR1|9145|synaptogyrin 1##CU013190|SYNGR1|9145|synaptogyrin 1##CU013478|SYNGR1|9145|synaptogyrin 1##AJ002304|SYNGR1|9145|synaptogyrin 1##AJ002305|SYNGR1|9145|synaptogyrin 1##BT007135|SYNGR1|9145|synaptogyrin 1##BC014017|RPL3|6122|ribosomal protein L3##BC013674|RPL3|6122|ribosomal protein L3##BC013861|RPL3|6122|ribosomal protein L3##BC015032|RPL3|6122|ribosomal protein L3##BC015767|RPL3|6122|ribosomal protein L3##BC088373|RPL3|6122|ribosomal protein L3##BC063662|RPL3|6122|ribosomal protein L3##BC071666|RPL3|6122|ribosomal protein L3##CR456566|RPL3|6122|ribosomal protein L3##BC006483|RPL3|6122|ribosomal protein L3##BC012146|RPL3|6122|ribosomal protein L3##BC012786|RPL3|6122|ribosomal protein L3##AK092695|RPL3|6122|ribosomal protein L3##AK297711|RPL3|6122|ribosomal protein L3##AK315693|RPL3|6122|ribosomal protein L3##BC008492|RPL3|6122|ribosomal protein L3##BC107711|RPL3|6122|ribosomal protein L3##NM_000967|RPL3|6122|ribosomal protein L3##NM_001033853|RPL3|6122|ribosomal protein L3##BC050554|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_006116|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_153497|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK296314|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##BC038582|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AF425640|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK312456|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##U49928|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK291668|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK316004|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK308903|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_002409|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	0.997732	0.0	
chr20	35258348	35258528	reg1010972.p2	4.643	+	TSC_hg19_v1_chr20_+_35234211 BC004446 BC001871 AF274936 S83364	-24134	+	TSC_hg19_v1_chr20_+_35234167 AF112213	-24275	+	TSC_hg19_v1_chr20_+_35234142 NM_001199534 NM_018840 NM_199483	-24328	+	BC042041 AK291513 NM_032214 NM_175077	16149	-	TSC_hg19_v1_chr20_-_35374488 AK027665 AK295466 AB044943 AF251054 AK023618 AK295420	116041	-	TSC_hg19_v1_chr20_-_35374542 NM_022477 NM_032013	116114	-	BC004446|C20orf24|55969|chromosome 20 open reading frame 24##BC001871|C20orf24|55969|chromosome 20 open reading frame 24##AF274936|C20orf24|55969|chromosome 20 open reading frame 24##S83364|C20orf24|55969|chromosome 20 open reading frame 24##AF112213|C20orf24|55969|chromosome 20 open reading frame 24##NM_001199534|C20orf24|55969|chromosome 20 open reading frame 24##NM_018840|C20orf24|55969|chromosome 20 open reading frame 24##NM_199483|C20orf24|55969|chromosome 20 open reading frame 24##BC042041|SLA2|84174|Src-like-adaptor 2##AK291513|SLA2|84174|Src-like-adaptor 2##NM_032214|SLA2|84174|Src-like-adaptor 2##NM_175077|SLA2|84174|Src-like-adaptor 2##AK027665|NDRG3|57446|NDRG family member 3##AK295466|NDRG3|57446|NDRG family member 3##AB044943|NDRG3|57446|NDRG family member 3##AK023618|NDRG3|57446|NDRG family member 3##AK295420|NDRG3|57446|NDRG family member 3##NM_022477|NDRG3|57446|NDRG family member 3##NM_032013|NDRG3|57446|NDRG family member 3	0.996942	0.0	denovo_WM_7:-90:0.841
chr2	81477410	81477539	reg1007043.p1	4.643	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-945631	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-945749	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-945949	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3208896	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3208921	-	NM_003849	3209111	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.369753	0.0	
chr4	148604745	148604925	reg1012105.p1	4.643	+	TSC_hg19_v1_chr4_+_148538568 AK001708	-66229	+	TSC_hg19_v1_chr4_+_148538547 BC046128 NM_018241	-66302	+	TSC_hg19_v1_chr4_+_148402244 AK312812 BC022511 AK304451 S45956	-202525	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	429	-	TSC_hg19_v1_chr4_+_148653238 AK123785	48416	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	48622	+	AK001708|TMEM184C|55751|transmembrane protein 184C##BC046128|TMEM184C|55751|transmembrane protein 184C##NM_018241|TMEM184C|55751|transmembrane protein 184C##AK312812|EDNRA|1909|endothelin receptor type A##BC022511|EDNRA|1909|endothelin receptor type A##AK304451|EDNRA|1909|endothelin receptor type A##S45956|EDNRA|1909|endothelin receptor type A##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10	2.951363	0.0	denovo_WM_7:43:0.932	denovo_WM_7:-57:0.924	denovo_WM_7:59:0.313	denovo_WM_7:60:0.313	denovo_WM_7:61:0.317
chr6	138836126	138836236	reg1012849.p1	4.643	+	TSC_hg19_v1_chr6_-_138820580 AK092744 AX747703	-15565	-	AK307584 NM_001144060 TSC_hg19_v1_chr6_-_138820579	-15603	-	BC010290 TSC_hg19_v1_chr6_+_138725477 BC008205 BC093037 AF411610	-110636	+	TSC_hg19_v1_chr6_-_138893682 NM_020464	57527	-	TSC_hg19_v1_chr6_+_139013613 AK128874	177432	+	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	258609	+	AK307584|NHSL1|57224|NHS-like 1##NM_001144060|NHSL1|57224|NHS-like 1##BC010290|HEBP2|23593|heme binding protein 2##BC008205|HEBP2|23593|heme binding protein 2##BC093037|HEBP2|23593|heme binding protein 2##AF411610|HEBP2|23593|heme binding protein 2##NM_020464|NHSL1|57224|NHS-like 1##AK128874|FLJ46906|441172|uncharacterized LOC441172##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A	0.104141	0.0	
chrX	17139746	17139843	reg1011798.p1	4.643	+	TSC_hg19_v1_chrX_+_16964847 AF010233 NM_001080975 NM_004726 AF511533 AF512951	-174862	+	TSC_hg19_v1_chrX_-_16888462 NM_002893	-251297	-	TSC_hg19_v1_chrX_-_16888456 X72841	-251343	-	TSC_hg19_v1_chrX_+_17393357 AK302437	253560	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	253748	+	TSC_hg19_v1_chrX_+_17393806 BC136415 BC171763	254017	+	AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2##AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2##AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_002893|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7##AK302437|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC136415|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC171763|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)	0.815891	0.946847	CTCF.p2:-5:0.947	denovo_WM_7:53:0.792
chr12	104680528	104680708	reg1002247.p2	4.642	+	TSC_hg19_v1_chr12_+_104659047 D28393	-21570	+	TSC_hg19_v1_chr12_+_104609556 NM_001093771 AK304241 AY057105	-71078	+	TSC_hg19_v1_chr12_-_104531875 X59710 BC007035 AK291934 BC005316 BC005317 AK311706 NM_006166	-148661	-	TSC_hg19_v1_chr12_+_104680799 NM_003330 NM_182729 NM_182742 NM_182743 AK226071 AY344087 AK308881 AY344090 AY344091 AY344076 AY344075 AY344073 AY344074 AY344072 AY344081 AY344082 AY344097 AK293322 AK312262 AK296495 AY344088 AY344089 AY344674 AY344077 AY344092 AY344084 AY344086 AY344673 S79851 X91247 AY344085 AY344080 BC018122 AY344093 AY344669 AY344071 AY344676 AY344070 AY344675	196	+	TSC_hg19_v1_chr12_+_104680950 AY344078	343	+	D88687 TSC_hg19_v1_chr12_+_104681047 AK295067	468	+	D28393|RPL18A|6142|ribosomal protein L18a##NM_001093771|TXNRD1|7296|thioredoxin reductase 1##AK304241|TXNRD1|7296|thioredoxin reductase 1##AY057105|TXNRD1|7296|thioredoxin reductase 1##X59710|NFYB|4801|nuclear transcription factor Y, beta##BC007035|NFYB|4801|nuclear transcription factor Y, beta##AK291934|NFYB|4801|nuclear transcription factor Y, beta##BC005316|NFYB|4801|nuclear transcription factor Y, beta##BC005317|NFYB|4801|nuclear transcription factor Y, beta##AK311706|NFYB|4801|nuclear transcription factor Y, beta##NM_006166|NFYB|4801|nuclear transcription factor Y, beta##NM_003330|TXNRD1|7296|thioredoxin reductase 1##NM_182729|TXNRD1|7296|thioredoxin reductase 1##NM_182742|TXNRD1|7296|thioredoxin reductase 1##NM_182743|TXNRD1|7296|thioredoxin reductase 1##AK226071|TXNRD1|7296|thioredoxin reductase 1##AY344087|TXNRD1|7296|thioredoxin reductase 1##AK308881|TXNRD1|7296|thioredoxin reductase 1##AY344074|TXNRD1|7296|thioredoxin reductase 1##AY344081|TXNRD1|7296|thioredoxin reductase 1##AK293322|TXNRD1|7296|thioredoxin reductase 1##AK312262|TXNRD1|7296|thioredoxin reductase 1##AK296495|TXNRD1|7296|thioredoxin reductase 1##AY344089|TXNRD1|7296|thioredoxin reductase 1##AY344077|TXNRD1|7296|thioredoxin reductase 1##AY344092|TXNRD1|7296|thioredoxin reductase 1##AY344084|TXNRD1|7296|thioredoxin reductase 1##AY344086|TXNRD1|7296|thioredoxin reductase 1##AY344673|TXNRD1|7296|thioredoxin reductase 1##S79851|TXNRD1|7296|thioredoxin reductase 1##X91247|TXNRD1|7296|thioredoxin reductase 1##BC018122|TXNRD1|7296|thioredoxin reductase 1##AY344093|TXNRD1|7296|thioredoxin reductase 1##AY344675|TXNRD1|7296|thioredoxin reductase 1##D88687|TXNRD1|7296|thioredoxin reductase 1##AK295067|TXNRD1|7296|thioredoxin reductase 1	0.0	0.0	
chr13	25139153	25139280	reg1011276.p1	4.642	+	TSC_hg19_v1_chr13_-_25086917 BC017815 AF057160 AK304399 AF158255 NM_006437	-52305	-	BC040438 NM_178540 AY358145	-255499	+	TSC_hg19_v1_chr13_+_24844889 AK297394 AK298717 AK123031	-294318	+	AK292968 NM_001185085 NM_001676	115332	+	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	199103	+	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	357753	-	BC017815|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF057160|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AK304399|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF158255|PARP4|143|poly (ADP-ribose) polymerase family, member 4##NM_006437|PARP4|143|poly (ADP-ribose) polymerase family, member 4##BC040438|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##NM_178540|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##AY358145|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##AK297394|SPATA13|221178|spermatogenesis associated 13##AK298717|SPATA13|221178|spermatogenesis associated 13##AK123031|SPATA13|221178|spermatogenesis associated 13##AK292968|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001185085|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001676|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J	0.010092	0.0	
chr19	836926	837023	reg1011803.p2	4.642	+	TSC_hg19_v1_chr19_+_827836 BC093931 BC093933 BC069495 NM_001700 CU686850 X58794	-9138	+	AF357888 TSC_hg19_v1_chr19_-_821974	-15001	-	TSC_hg19_v1_chr19_-_821945 AY436785 AF541282 AL136596 AY304517 NM_024888	-15040	-	TSC_hg19_v1_chr19_+_840963 M75154	3989	+	X56606 BC096183 BC096184 BC096185 BC096186 TSC_hg19_v1_chr19_+_840998 NM_002777 AB527757 X55668	4018	+	M34379 NM_001972 X05875 BC074816 BC074817 TSC_hg19_v1_chr19_+_852302	15323	+	BC093931|AZU1|566|azurocidin 1##BC093933|AZU1|566|azurocidin 1##BC069495|AZU1|566|azurocidin 1##NM_001700|AZU1|566|azurocidin 1##X58794|AZU1|566|azurocidin 1##AF357888|LPPR3|79948|lipid phosphate phosphatase-related protein type 3##AY436785|LPPR3|79948|lipid phosphate phosphatase-related protein type 3##AF541282|LPPR3|79948|lipid phosphate phosphatase-related protein type 3##AL136596|LPPR3|79948|lipid phosphate phosphatase-related protein type 3##AY304517|LPPR3|79948|lipid phosphate phosphatase-related protein type 3##NM_024888|LPPR3|79948|lipid phosphate phosphatase-related protein type 3##M75154|PRTN3|5657|proteinase 3##X56606|PRTN3|5657|proteinase 3##BC096183|PRTN3|5657|proteinase 3##BC096184|PRTN3|5657|proteinase 3##BC096185|PRTN3|5657|proteinase 3##BC096186|PRTN3|5657|proteinase 3##NM_002777|PRTN3|5657|proteinase 3##X55668|PRTN3|5657|proteinase 3##M34379|ELANE|1991|elastase, neutrophil expressed##NM_001972|ELANE|1991|elastase, neutrophil expressed##X05875|ELANE|1991|elastase, neutrophil expressed##BC074816|ELANE|1991|elastase, neutrophil expressed##BC074817|ELANE|1991|elastase, neutrophil expressed	0.990365	0.0	denovo_WM_7:-21:0.990
chr7	3132388	3132536	reg1001362.p2	4.642	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	-49000	-	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-248654	-	AK289723 AB075830 BC146753 NM_133463	-413304	+	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	208537	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1589376	+	TSC_hg19_v1_chr7_+_4722091 AX721089 AK302243 AK122663	1589789	+	AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1##AK302243|FOXK1|221937|forkhead box K1##AK122663|FOXK1|221937|forkhead box K1	0.992581	0.0	denovo_WM_7:44:0.319	denovo_WM_7:45:0.552
chr14	52314456	52314588	reg1001826.p2	4.641	+	TSC_hg19_v1_chr14_+_52118627 BX161430 NM_152330 BC020521 AK315764 AK055545 BX647863	-195892	+	AL833158 NM_001042481	-358668	+	NM_030755 AB048246 TSC_hg19_v1_chr14_+_51706980 AK302416 BC036460 BC016769 BC050366 AK075395 BC032834 AK303134 AL080080 BC056874 AY358640 AK312905 DQ891674 DQ894860 CU690352	-607573	+	NM_001243773 NM_001243774 NM_053064 AK092371	12554	+	TSC_hg19_v1_chr14_+_52327329 AK307171	12801	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	12842	+	BX161430|FRMD6|122786|FERM domain containing 6##NM_152330|FRMD6|122786|FERM domain containing 6##BC020521|FRMD6|122786|FERM domain containing 6##AK315764|FRMD6|122786|FERM domain containing 6##AK055545|FRMD6|122786|FERM domain containing 6##BX647863|FRMD6|122786|FERM domain containing 6##AL833158|FRMD6|122786|FERM domain containing 6##NM_001042481|FRMD6|122786|FERM domain containing 6##NM_030755|TMX1|81542|thioredoxin-related transmembrane protein 1##AB048246|TMX1|81542|thioredoxin-related transmembrane protein 1##BC036460|TMX1|81542|thioredoxin-related transmembrane protein 1##BC016769|TMX1|81542|thioredoxin-related transmembrane protein 1##BC050366|TMX1|81542|thioredoxin-related transmembrane protein 1##AK075395|TMX1|81542|thioredoxin-related transmembrane protein 1##BC032834|TMX1|81542|thioredoxin-related transmembrane protein 1##AK303134|TMX1|81542|thioredoxin-related transmembrane protein 1##AL080080|TMX1|81542|thioredoxin-related transmembrane protein 1##BC056874|TMX1|81542|thioredoxin-related transmembrane protein 1##AY358640|TMX1|81542|thioredoxin-related transmembrane protein 1##AK312905|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ891674|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ894860|TMX1|81542|thioredoxin-related transmembrane protein 1##NM_001243773|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##NM_001243774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##NM_053064|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK092371|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK307171|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2	1.981428	0.0	denovo_WM_7:80:0.900	denovo_WM_7:95:0.314	denovo_WM_7:96:0.325	denovo_WM_7:97:0.337
chr3	10205715	10205813	reg1010458.p1	4.641	+	TSC_hg19_v1_chr3_+_10183517 AB528056	-22226	+	AK304002 TSC_hg19_v1_chr3_+_10183487	-22266	+	L15409 NM_000551 NM_198156 TSC_hg19_v1_chr3_+_10183474 AK315799 BC058831 BC027957	-22362	+	NM_001570 BC125184 AK299033 AK312841 TSC_hg19_v1_chr3_+_10206602 AF026273 AB587544 AJ496794	836	+	TSC_hg19_v1_chr3_+_10290182 NM_014760	84411	+	TSC_hg19_v1_chr3_+_10290210 D86972	84498	+	AK304002|VHL|7428|von Hippel-Lindau tumor suppressor##L15409|VHL|7428|von Hippel-Lindau tumor suppressor##NM_000551|VHL|7428|von Hippel-Lindau tumor suppressor##NM_198156|VHL|7428|von Hippel-Lindau tumor suppressor##AK315799|VHL|7428|von Hippel-Lindau tumor suppressor##BC058831|VHL|7428|von Hippel-Lindau tumor suppressor##BC027957|VHL|7428|von Hippel-Lindau tumor suppressor##NM_001570|IRAK2|3656|interleukin-1 receptor-associated kinase 2##BC125184|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK299033|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK312841|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AF026273|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AJ496794|IRAK2|3656|interleukin-1 receptor-associated kinase 2##NM_014760|TATDN2|9797|TatD DNase domain containing 2##D86972|TATDN2|9797|TatD DNase domain containing 2	0.991922	0.0	denovo_WM_7:69:0.837
chr9	100963295	100963475	reg1012798.p1	4.641	+	TSC_hg19_v1_chr9_-_100954922 AK292788 BC011690 AB209809 NM_052820	-8452	-	NM_003389	-28212	-	TSC_hg19_v1_chr9_-_100881526 AK055833	-81841	-	AK026105 CU687204 AK298575 AB209721 AB449882 AF318370 AK131290 TSC_hg19_v1_chr9_-_101017885 BC071978 AY026527	54336	-	TSC_hg19_v1_chr9_-_101018013 NM_018421	54619	-	DQ891731 DQ894908 CU690042 TSC_hg19_v1_chr9_-_101471213 AF074483 AF099033 AJ012188 AB384741 AF069755 AF056085 NM_005458 BC035071	507800	-	AK292788|CORO2A|7464|coronin, actin binding protein, 2A##BC011690|CORO2A|7464|coronin, actin binding protein, 2A##AB209809|CORO2A|7464|coronin, actin binding protein, 2A##NM_052820|CORO2A|7464|coronin, actin binding protein, 2A##NM_003389|CORO2A|7464|coronin, actin binding protein, 2A##AK055833|TRIM14|9830|tripartite motif containing 14##AK026105|TBC1D2|55357|TBC1 domain family, member 2##AK298575|TBC1D2|55357|TBC1 domain family, member 2##AB209721|TBC1D2|55357|TBC1 domain family, member 2##AB449882|TBC1D2|55357|TBC1 domain family, member 2##AF318370|TBC1D2|55357|TBC1 domain family, member 2##AK131290|TBC1D2|55357|TBC1 domain family, member 2##BC071978|TBC1D2|55357|TBC1 domain family, member 2##AY026527|TBC1D2|55357|TBC1 domain family, member 2##NM_018421|TBC1D2|55357|TBC1 domain family, member 2##DQ891731|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##DQ894908|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF074483|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF099033|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AJ012188|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF069755|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF056085|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##NM_005458|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##BC035071|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2	0.986172	0.0	denovo_WM_7:-79:0.807
chr1	27610987	27611108	reg1002399.p1	4.640	+	TSC_hg19_v1_chr1_+_27561153 BC032523	-49885	+	TSC_hg19_v1_chr1_+_27561124 AK315564	-49920	+	NM_015023 TSC_hg19_v1_chr1_+_27561056	-50013	+	TSC_hg19_v1_chr1_+_27648669 NM_032125 AK313110 AK303821	37604	+	AL136683 BC011579 BC090039 TSC_hg19_v1_chr1_+_27648745	37686	+	TSC_hg19_v1_chr1_+_27648756 EU831420 EU831513 AF251699 AK222642 AK307077 BX648289	37769	+	BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_032125|TMEM222|84065|transmembrane protein 222##AK313110|TMEM222|84065|transmembrane protein 222##AK303821|TMEM222|84065|transmembrane protein 222##AL136683|TMEM222|84065|transmembrane protein 222##BC011579|TMEM222|84065|transmembrane protein 222##BC090039|TMEM222|84065|transmembrane protein 222##EU831420|TMEM222|84065|transmembrane protein 222##EU831513|TMEM222|84065|transmembrane protein 222##AF251699|TMEM222|84065|transmembrane protein 222##AK222642|TMEM222|84065|transmembrane protein 222##AK307077|TMEM222|84065|transmembrane protein 222##BX648289|LOC644961|644961|actin, beta pseudogene	0.0	0.0	
chr17	34218525	34218666	reg1008844.p2	4.640	+	AF266753 DQ230537 AB463488 AF043341 DQ891490 DQ894681 M21121 BC008600 TSC_hg19_v1_chr17_-_34207365 AK312212 NM_002985	-11249	-	HQ258319 BC132681 BC144011 BC033734 AK301943 AK301884 AK057392 AK301774 NM_152781	-22776	-	BC039129 TSC_hg19_v1_chr17_+_34171892	-46808	+	EF488473 EF488479 EF488480 EF488481 EF488482 EU176448 NM_001163122 NM_001163124 NM_001163125 NM_001163130	38698	-	AB528914 EF488474 EF488475 EF488476 EF488477 EF488478 BC032114 AK302782 AB080728 TSC_hg19_v1_chr17_-_34257778 BC127190 BC038301 NM_001034836 NM_001163120 NM_001163121 NM_145654	39163	-	CU691088 AY742214 AY359018 NM_020426	47864	-	AF266753|CCL5|6352|chemokine (C-C motif) ligand 5##DQ230537|CCL5|6352|chemokine (C-C motif) ligand 5##AF043341|CCL5|6352|chemokine (C-C motif) ligand 5##DQ891490|CCL5|6352|chemokine (C-C motif) ligand 5##DQ894681|CCL5|6352|chemokine (C-C motif) ligand 5##M21121|CCL5|6352|chemokine (C-C motif) ligand 5##BC008600|CCL5|6352|chemokine (C-C motif) ligand 5##AK312212|CCL5|6352|chemokine (C-C motif) ligand 5##NM_002985|CCL5|6352|chemokine (C-C motif) ligand 5##HQ258319|C17orf66|256957|chromosome 17 open reading frame 66##BC132681|C17orf66|256957|chromosome 17 open reading frame 66##BC144011|C17orf66|256957|chromosome 17 open reading frame 66##BC033734|C17orf66|256957|chromosome 17 open reading frame 66##AK301943|C17orf66|256957|chromosome 17 open reading frame 66##AK301884|C17orf66|256957|chromosome 17 open reading frame 66##AK057392|C17orf66|256957|chromosome 17 open reading frame 66##AK301774|C17orf66|256957|chromosome 17 open reading frame 66##NM_152781|C17orf66|256957|chromosome 17 open reading frame 66##BC039129|TAF15|8148|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa##EF488473|RDM1|201299|RAD52 motif 1##EF488479|RDM1|201299|RAD52 motif 1##EF488480|RDM1|201299|RAD52 motif 1##EF488481|RDM1|201299|RAD52 motif 1##EF488482|RDM1|201299|RAD52 motif 1##EU176448|RDM1|201299|RAD52 motif 1##NM_001163122|RDM1|201299|RAD52 motif 1##NM_001163124|RDM1|201299|RAD52 motif 1##NM_001163125|RDM1|201299|RAD52 motif 1##NM_001163130|RDM1|201299|RAD52 motif 1##EF488474|RDM1|201299|RAD52 motif 1##EF488475|RDM1|201299|RAD52 motif 1##EF488476|RDM1|201299|RAD52 motif 1##EF488477|RDM1|201299|RAD52 motif 1##EF488478|RDM1|201299|RAD52 motif 1##BC032114|RDM1|201299|RAD52 motif 1##AK302782|RDM1|201299|RAD52 motif 1##AB080728|RDM1|201299|RAD52 motif 1##BC127190|RDM1|201299|RAD52 motif 1##BC038301|RDM1|201299|RAD52 motif 1##NM_001034836|RDM1|201299|RAD52 motif 1##NM_001163120|RDM1|201299|RAD52 motif 1##NM_001163121|RDM1|201299|RAD52 motif 1##NM_145654|RDM1|201299|RAD52 motif 1##AY742214|LYZL6|57151|lysozyme-like 6##AY359018|LYZL6|57151|lysozyme-like 6##NM_020426|LYZL6|57151|lysozyme-like 6	0.896002	0.0	denovo_WM_7:-9:0.654	denovo_WM_7:-10:0.201
chr17	7354477	7354555	reg1012981.p1	4.640	+	AK298938 TSC_hg19_v1_chr17_+_7348840 AK294880	-5666	+	TSC_hg19_v1_chr17_+_7348379 BC023553 NM_000747 AK308106 BC011371 X14830 DQ894641	-6112	+	BC032502 NM_004112 AB209390 AB590462 AY049782 U66199	-11703	+	TSC_hg19_v1_chr17_-_7382882 AK122971 AY302699	28337	-	AB040971 NM_001128833 TSC_hg19_v1_chr17_-_7382945	28449	-	NM_001102614	30204	+	AK298938|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##AK294880|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##BC023553|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##NM_000747|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##AK308106|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##BC011371|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##X14830|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##DQ894641|CHRNB1|1140|cholinergic receptor, nicotinic, beta 1 (muscle)##BC032502|FGF11|2256|fibroblast growth factor 11##NM_004112|FGF11|2256|fibroblast growth factor 11##AB209390|FGF11|2256|fibroblast growth factor 11##AY049782|FGF11|2256|fibroblast growth factor 11##U66199|FGF11|2256|fibroblast growth factor 11##AK122971|ZBTB4|57659|zinc finger and BTB domain containing 4##AY302699|ZBTB4|57659|zinc finger and BTB domain containing 4##AB040971|ZBTB4|57659|zinc finger and BTB domain containing 4##NM_001128833|ZBTB4|57659|zinc finger and BTB domain containing 4##NM_001102614|SLC35G6|643664|solute carrier family 35, member G6	1.768801	0.0	denovo_WM_7:75:0.248	denovo_WM_7:90:0.382
chr17	77971052	77971231	reg1011485.p1	4.640	+	BC044939 TSC_hg19_v1_chr17_+_77893233	-77942	+	AY390430 CU677141 AB463501 BC014967 TSC_hg19_v1_chr17_-_77813168 NM_003655 EU439707 AF013956	-157999	-	TSC_hg19_v1_chr17_-_77770845 AB384672 CU679333 EU446831 BC008937 BC019289 AF266479 BC009376 AF174482 AK074560 NM_020649	-200234	-	TSC_hg19_v1_chr17_-_78009672 BC028290 NM_019020	38461	-	NM_001243342 NM_017950 TSC_hg19_v1_chr17_+_78010456 BC035251 AK000760 BC058288	39307	+	TSC_hg19_v1_chr17_+_78075349 NM_000152 NM_001079803 NM_001079804	104185	+	AY390430|CBX4|8535|chromobox homolog 4##BC014967|CBX4|8535|chromobox homolog 4##NM_003655|CBX4|8535|chromobox homolog 4##EU439707|CBX4|8535|chromobox homolog 4##AF013956|CBX4|8535|chromobox homolog 4##EU446831|CBX8|57332|chromobox homolog 8##BC008937|CBX8|57332|chromobox homolog 8##BC019289|CBX8|57332|chromobox homolog 8##AF266479|CBX8|57332|chromobox homolog 8##BC009376|CBX8|57332|chromobox homolog 8##AF174482|CBX8|57332|chromobox homolog 8##AK074560|CBX8|57332|chromobox homolog 8##NM_020649|CBX8|57332|chromobox homolog 8##BC028290|TBC1D16|125058|TBC1 domain family, member 16##NM_019020|TBC1D16|125058|TBC1 domain family, member 16##NM_001243342|CCDC40|55036|coiled-coil domain containing 40##NM_017950|CCDC40|55036|coiled-coil domain containing 40##BC035251|CCDC40|55036|coiled-coil domain containing 40##AK000760|CCDC40|55036|coiled-coil domain containing 40##BC058288|CCDC40|55036|coiled-coil domain containing 40##NM_000152|GAA|2548|glucosidase, alpha; acid##NM_001079803|GAA|2548|glucosidase, alpha; acid##NM_001079804|GAA|2548|glucosidase, alpha; acid	0.981622	0.0	denovo_WM_7:14:0.554	denovo_WM_7:15:0.323
chr2	208393641	208393821	reg1011722.p2	4.640	+	BC012919 TSC_hg19_v1_chr2_-_208031680	-362106	-	AB015132 NM_003709 TSC_hg19_v1_chr2_-_208030685 AK314439	-363075	-	BC112076 BC112078 NM_173077 AJ422118	-589431	+	NM_004379 NM_134442 TSC_hg19_v1_chr2_+_208394671 BC095407	912	+	TSC_hg19_v1_chr2_+_208394709 X55545 M27691	990	+	TSC_hg19_v1_chr2_+_208394772 BC010636 AK298740	1050	+	BC012919|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AB015132|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_003709|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AK314439|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##BC112076|CPO|130749|carboxypeptidase O##BC112078|CPO|130749|carboxypeptidase O##NM_173077|CPO|130749|carboxypeptidase O##AJ422118|CPO|130749|carboxypeptidase O##NM_004379|CREB1|1385|cAMP responsive element binding protein 1##NM_134442|CREB1|1385|cAMP responsive element binding protein 1##BC095407|CREB1|1385|cAMP responsive element binding protein 1##X55545|CREB1|1385|cAMP responsive element binding protein 1##M27691|CREB1|1385|cAMP responsive element binding protein 1##BC010636|CREB1|1385|cAMP responsive element binding protein 1##AK298740|CREB1|1385|cAMP responsive element binding protein 1	0.996138	0.0	
chr4	155954304	155954423	reg1009790.p2	4.640	+	NM_144979 AK302720 BC028588	-251901	+	TSC_hg19_v1_chr4_+_155665151 AY546085 AY546086 NM_004744 AF071510	-289147	+	TSC_hg19_v1_chr4_+_155665114 AK292598	-289245	+	NM_000910 U42766	175417	+	TSC_hg19_v1_chr4_-_156297959 BC022852	343592	-	TSC_hg19_v1_chr4_-_156297990 AK301075 BC146864 BC128540 BC128541 BC056683	343645	-	NM_144979|RBM46|166863|RNA binding motif protein 46##AK302720|RBM46|166863|RNA binding motif protein 46##BC028588|RBM46|166863|RNA binding motif protein 46##AY546085|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AY546086|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##NM_004744|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AF071510|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##AK292598|LRAT|9227|lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)##NM_000910|NPY2R|4887|neuropeptide Y receptor Y2##U42766|NPY2R|4887|neuropeptide Y receptor Y2##BC022852|MAP9|79884|microtubule-associated protein 9##AK301075|MAP9|79884|microtubule-associated protein 9##BC146864|MAP9|79884|microtubule-associated protein 9##BC128540|MAP9|79884|microtubule-associated protein 9##BC128541|MAP9|79884|microtubule-associated protein 9##BC056683|MAP9|79884|microtubule-associated protein 9	0.993887	0.0	denovo_WM_7:42:0.809
chr11	118281264	118281444	reg1008917.p2	4.639	+	TSC_hg19_v1_chr11_+_118272320 BC015128 AF070655 AL050277 AF087846 AF092124 AK289568 BC070165 AM393064 AM393513 CU687060 CR533494 CR542211	-9018	+	NM_006476	-9251	+	BC039240 TSC_hg19_v1_chr11_+_118257240	-24118	+	TSC_hg19_v1_chr11_+_118307211 D14540 NM_001197104 NM_005933 L22179 L04284	25795	+	EU489483 BC146916 BC146921 BC171906 BC171913 NM_001080441	116824	+	TSC_hg19_v1_chr11_+_118401755 NM_001144034 NM_001144035 NM_001144036 NM_001144037 NM_001144038 NM_032780	120424	+	BC015128|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AF070655|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AL050277|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AF087846|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AF092124|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AK289568|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##BC070165|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AM393064|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##AM393513|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##CR533494|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##CR542211|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##NM_006476|ATP5L|10632|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G##BC039240|UBE4A|9354|ubiquitination factor E4A##D14540|MLL|4297|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)##NM_001197104|MLL|4297|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)##NM_005933|MLL|4297|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)##L04284|MLL|4297|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)##EU489483|TTC36|143941|tetratricopeptide repeat domain 36##BC146916|TTC36|143941|tetratricopeptide repeat domain 36##BC146921|TTC36|143941|tetratricopeptide repeat domain 36##BC171906|TTC36|143941|tetratricopeptide repeat domain 36##BC171913|TTC36|143941|tetratricopeptide repeat domain 36##NM_001080441|TTC36|143941|tetratricopeptide repeat domain 36##NM_001144034|TMEM25|84866|transmembrane protein 25##NM_001144035|TMEM25|84866|transmembrane protein 25##NM_001144036|TMEM25|84866|transmembrane protein 25##NM_001144037|TMEM25|84866|transmembrane protein 25##NM_001144038|TMEM25|84866|transmembrane protein 25##NM_032780|TMEM25|84866|transmembrane protein 25	0.99424	0.0	
chr12	123868479	123868575	reg1004677.p1	4.639	+	AK122703 TSC_hg19_v1_chr12_-_123849766	-18762	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	-19134	-	AY364255 AB014772 BC129949 BC133704 NM_001167856 NM_018183	-33542	-	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	128	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	196	+	AY064546 TSC_hg19_v1_chr12_+_123873657	5102	+	AK122703|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AY364255|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AB014772|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC129949|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC133704|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_001167856|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_018183|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8	0.0	0.0	
chr2	29333951	29334069	reg1014095.p1	4.639	+	NM_001029883	-36884	-	AK296977 NM_199280	-129847	+	TSC_hg19_v1_chr2_+_29117555 NM_015131 D26488	-216472	+	TSC_hg19_v1_chr2_+_29338370 BC013862 NM_024692 AL834443	4345	+	EU788003 EU788004 EU788005 EU788006 EU788007 EU788008 EU788009 EU788010 FJ838786 FJ838787 U62540 TSC_hg19_v1_chr2_-_30144453 AK296218 NM_004304	810444	-	NM_001127399 NM_001127400 NM_001127401 NM_016061 TSC_hg19_v1_chr2_+_30369786	1035760	+	NM_001029883|C2orf71|388939|chromosome 2 open reading frame 71##AK296977|FAM179A|165186|family with sequence similarity 179, member A##NM_199280|FAM179A|165186|family with sequence similarity 179, member A##NM_015131|WDR43|23160|WD repeat domain 43##D26488|WDR43|23160|WD repeat domain 43##BC013862|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##NM_024692|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##AL834443|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##EU788003|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788004|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788005|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788006|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788007|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788008|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788009|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788010|ALK|238|anaplastic lymphoma receptor tyrosine kinase##FJ838786|ALK|238|anaplastic lymphoma receptor tyrosine kinase##FJ838787|ALK|238|anaplastic lymphoma receptor tyrosine kinase##U62540|ALK|238|anaplastic lymphoma receptor tyrosine kinase##AK296218|ALK|238|anaplastic lymphoma receptor tyrosine kinase##NM_004304|ALK|238|anaplastic lymphoma receptor tyrosine kinase##NM_001127399|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127400|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127401|YPEL5|51646|yippee-like 5 (Drosophila)##NM_016061|YPEL5|51646|yippee-like 5 (Drosophila)	0.0	0.0	
chr5	176421759	176421874	reg1007838.p2	4.639	+	U51333 BC028129 NM_002115	-95493	-	TSC_hg19_v1_chr5_+_176237521 AK131380 NM_133369 BC157824	-184261	+	TSC_hg19_v1_chr5_+_176074497 AK024427 BC067105 BC010405 AF174603 CU679699 CU688248	-347264	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	11772	-	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	27903	+	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	92066	+	U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##AK131380|UNC5A|90249|unc-5 homolog A (C. elegans)##NM_133369|UNC5A|90249|unc-5 homolog A (C. elegans)##BC157824|UNC5A|90249|unc-5 homolog A (C. elegans)##AK024427|TSPAN17|26262|tetraspanin 17##BC067105|TSPAN17|26262|tetraspanin 17##BC010405|TSPAN17|26262|tetraspanin 17##AF174603|TSPAN17|26262|tetraspanin 17##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4	0.0	0.0	
chr6	11375067	11375175	reg1011522.p1	4.639	+	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-142211	-	L43821 TSC_hg19_v1_chr6_-_11232900	-142221	-	U64317 BC020686 TSC_hg19_v1_chr6_-_11232894 BC050740 BC040207	-142230	-	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	7419	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	163377	+	NM_001143948 NM_032744	404158	-	NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##L43821|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##U64317|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC020686|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC050740|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC040207|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105	1.126464	0.0	denovo_WM_7:17:0.620	denovo_WM_7:18:0.215
chr7	99591934	99592056	reg1009698.p1	4.639	+	D90427 M76707 BC014470 AB463407 CU689768 X59766 BC005306 TSC_hg19_v1_chr7_-_99573655 BC005908 BC033830 NM_001185	-18310	-	AB528858 AF503615 AY297109 NM_181538	-64753	-	TSC_hg19_v1_chr7_-_99517154 AF220023 AF220024 AK092892 AX747794 NM_033017 NM_033091	-74800	-	TSC_hg19_v1_chr7_+_99613225 AL833578 NM_003439 AF454940 AK054676 AY260738 BC022378 BX640646 AK091471 AX747005 AK074116	21230	+	BC112224 BC113697 CU692588 EU446909 HQ258578 TSC_hg19_v1_chr7_+_99621246	29170	+	TSC_hg19_v1_chr7_+_99627917 U09848	35943	+	D90427|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##M76707|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC014470|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##X59766|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC005306|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC005908|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##BC033830|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##NM_001185|AZGP1|563|alpha-2-glycoprotein 1, zinc-binding##AF503615|GJC3|349149|gap junction protein, gamma 3, 30.2kDa##AY297109|GJC3|349149|gap junction protein, gamma 3, 30.2kDa##NM_181538|GJC3|349149|gap junction protein, gamma 3, 30.2kDa##AF220023|TRIM4|89122|tripartite motif containing 4##AF220024|TRIM4|89122|tripartite motif containing 4##AK092892|TRIM4|89122|tripartite motif containing 4##NM_033017|TRIM4|89122|tripartite motif containing 4##NM_033091|TRIM4|89122|tripartite motif containing 4##AL833578|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##NM_003439|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AF454940|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK054676|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AY260738|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC022378|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BX640646|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK091471|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##AK074116|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC112224|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC113697|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##EU446909|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##HQ258578|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##U09848|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1	0.972027	0.698976	CTCF.p2:-17:0.699	denovo_WM_7:64:0.659
chr8	125769813	125769993	reg1011848.p1	4.639	+	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	-29180	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	-29458	-	TSC_hg19_v1_chr8_-_125716430 U50573	-53471	-	NM_152412 BX537876 AK095321 BC130515 BC130517	215645	+	NM_003129 TSC_hg19_v1_chr8_+_126010746 AK301792 BX647605	240830	+	TSC_hg19_v1_chr8_+_126010748 BX647400	240873	+	AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##U50573|MTSS1|9788|metastasis suppressor 1##NM_152412|ZNF572|137209|zinc finger protein 572##BX537876|ZNF572|137209|zinc finger protein 572##AK095321|ZNF572|137209|zinc finger protein 572##BC130515|ZNF572|137209|zinc finger protein 572##BC130517|ZNF572|137209|zinc finger protein 572##NM_003129|SQLE|6713|squalene epoxidase##AK301792|SQLE|6713|squalene epoxidase##BX647605|SQLE|6713|squalene epoxidase##BX647400|SQLE|6713|squalene epoxidase	0.0	0.0	
chr12	5052836	5052973	reg1009166.p2	4.638	+	TSC_hg19_v1_chr12_+_5019070 NM_000217	-33844	+	NM_002235 X17622 TSC_hg19_v1_chr12_+_4918486	-134489	+	AJ271385 NM_017417 BC140888 BC140889	-223136	+	M55513 NM_002234 BC096357 BC096358 BC099665 BC099666 M60451 M83254	100215	+	TSC_hg19_v1_chr12_+_5541277 AK293895 NM_001102654	488372	+	BC069773 NM_002527 BC107075 AB464638 CR541906 CU687004	550434	+	NM_000217|KCNA1|3736|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)##NM_002235|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##X17622|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##AJ271385|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_017417|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140888|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140889|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##M55513|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_002234|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096357|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096358|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099665|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099666|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M60451|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M83254|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##AK293895|NTF3|4908|neurotrophin 3##NM_001102654|NTF3|4908|neurotrophin 3##BC069773|NTF3|4908|neurotrophin 3##NM_002527|NTF3|4908|neurotrophin 3##BC107075|NTF3|4908|neurotrophin 3##CR541906|NTF3|4908|neurotrophin 3	0.0	0.0	
chr15	90932938	90933108	reg1007504.p3	4.638	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-1484	+	TSC_hg19_v1_chr15_+_90931506 BC005906	-1517	+	TSC_hg19_v1_chr15_+_90931499 AK304337	-1529	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	140173	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	327591	+	NM_002569 X17094	478861	+	BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC005906|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK304337|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)	0.992941	0.0	denovo_WM_7:7:0.314	denovo_WM_7:8:0.314	denovo_WM_7:9:0.314
chr17	16236804	16236948	reg1010450.p1	4.638	+	TSC_hg19_v1_chr17_+_16120523 NM_004278 AK292932 AK302523 AK296120 BC068197 AB017165 CU686621	-116370	+	BC056862 BC035748 BC142648 BC026028 AK307614 TSC_hg19_v1_chr17_-_16118849 AF044209 BC050594 BC068996 BC058511 BC107772 NM_006311	-118036	-	AB385422 AB028970 BC167431 NM_001190438 NM_001190440 AF087856 AF303586	-138958	-	TSC_hg19_v1_chr17_-_16256747 AF514992 NM_181716 BC052604	19886	-	TSC_hg19_v1_chr17_-_16256824 BC137486 BC137487	19957	-	TSC_hg19_v1_chr17_+_16284371 BC000379 NM_018955	47488	+	NM_004278|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AK292932|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AK302523|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AK296120|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##BC068197|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##AB017165|PIGL|9487|phosphatidylinositol glycan anchor biosynthesis, class L##BC056862|NCOR1|9611|nuclear receptor corepressor 1##BC035748|NCOR1|9611|nuclear receptor corepressor 1##BC142648|NCOR1|9611|nuclear receptor corepressor 1##BC026028|NCOR1|9611|nuclear receptor corepressor 1##AK307614|NCOR1|9611|nuclear receptor corepressor 1##AF044209|NCOR1|9611|nuclear receptor corepressor 1##BC050594|NCOR1|9611|nuclear receptor corepressor 1##BC068996|NCOR1|9611|nuclear receptor corepressor 1##BC058511|NCOR1|9611|nuclear receptor corepressor 1##BC107772|NCOR1|9611|nuclear receptor corepressor 1##NM_006311|NCOR1|9611|nuclear receptor corepressor 1##AB028970|NCOR1|9611|nuclear receptor corepressor 1##BC167431|NCOR1|9611|nuclear receptor corepressor 1##NM_001190438|NCOR1|9611|nuclear receptor corepressor 1##NM_001190440|NCOR1|9611|nuclear receptor corepressor 1##AF087856|NCOR1|9611|nuclear receptor corepressor 1##AF303586|NCOR1|9611|nuclear receptor corepressor 1##AF514992|CENPV|201161|centromere protein V##NM_181716|CENPV|201161|centromere protein V##BC052604|CENPV|201161|centromere protein V##BC137486|CENPV|201161|centromere protein V##BC137487|CENPV|201161|centromere protein V##BC000379|UBB|7314|ubiquitin B##NM_018955|UBB|7314|ubiquitin B	1.009503	0.0	
chr3	193494573	193494663	reg1009239.p1	4.638	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-183453	+	TSC_hg19_v1_chr3_+_193311006 BC043443 BC075805 AB011139	-183551	+	TSC_hg19_v1_chr3_+_193310928 NM_015560 NM_130831 NM_130832 NM_130833 NM_130834 NM_130835 NM_130836 NM_130837	-183663	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	359315	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	359337	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	577456	-	BC043443|OPA1|4976|optic atrophy 1 (autosomal dominant)##BC075805|OPA1|4976|optic atrophy 1 (autosomal dominant)##AB011139|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_015560|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130831|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130832|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130833|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130834|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130835|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130836|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_130837|OPA1|4976|optic atrophy 1 (autosomal dominant)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2	0.973069	0.0	denovo_WM_7:47:0.649	denovo_WM_7:48:0.280
chr7	74930978	74931131	reg1012321.p1	4.638	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-63534	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-422680	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-441362	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	57516	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	93911	+	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	108600	+	NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1	0.991806	0.0	denovo_WM_7:31:0.503	denovo_WM_7:34:0.335
chr9	125997452	125997632	reg1002356.p3	4.638	+	TSC_hg19_v1_chr9_-_125941308 BC002693	-56222	-	TSC_hg19_v1_chr9_-_125874882 AK025814	-122643	-	AB384939 BC066885 BC066886 BC067532 BC067533 BC067534 CU688178 NM_005294	-200697	+	TSC_hg19_v1_chr9_-_126030831 AL833947 AL834150 BC017732 NM_018387	33278	-	AL136866 NM_001171137 TSC_hg19_v1_chr9_-_126030866 BC108731 AK027890	33346	-	NM_173689 AK123000 DQ426866 AY720432	120951	+	BC002693|STRBP|55342|spermatid perinuclear RNA binding protein##AK025814|MIR600HG|81571|MIR600 host gene (non-protein coding)##BC066885|GPR21|2844|G protein-coupled receptor 21##BC066886|GPR21|2844|G protein-coupled receptor 21##BC067532|GPR21|2844|G protein-coupled receptor 21##BC067533|GPR21|2844|G protein-coupled receptor 21##BC067534|GPR21|2844|G protein-coupled receptor 21##NM_005294|GPR21|2844|G protein-coupled receptor 21##AL833947|STRBP|55342|spermatid perinuclear RNA binding protein##AL834150|STRBP|55342|spermatid perinuclear RNA binding protein##BC017732|STRBP|55342|spermatid perinuclear RNA binding protein##NM_018387|STRBP|55342|spermatid perinuclear RNA binding protein##AL136866|STRBP|55342|spermatid perinuclear RNA binding protein##NM_001171137|STRBP|55342|spermatid perinuclear RNA binding protein##BC108731|STRBP|55342|spermatid perinuclear RNA binding protein##AK027890|STRBP|55342|spermatid perinuclear RNA binding protein##NM_173689|CRB2|286204|crumbs homolog 2 (Drosophila)##AK123000|CRB2|286204|crumbs homolog 2 (Drosophila)##AY720432|CRB2|286204|crumbs homolog 2 (Drosophila)	0.779744	0.0	denovo_WM_7:39:0.637
chr16	58661320	58661462	reg1013410.p1	4.637	+	NM_001160305 NM_024860 TSC_hg19_v1_chr16_+_58549420 AK127136 BC110433 AK304822 AK290495 AK309468 BC022451 AK024801 AK297288 AB590837 CU692624	-111980	+	AK055038 AB044944 AB044945 AK131248 AK296415 AK299949 AK316089 NM_001242833 NM_001242834 NM_001242835 NM_001242836 TSC_hg19_v1_chr16_+_58534048 BC011795 AB033006 AL136584 BC001527 AB385436 AM393094 AM393323	-127293	+	NM_022910	-162666	+	TSC_hg19_v1_chr16_-_58663731 BX647815	2338	-	AK300281 AK056927 BX537840 TSC_hg19_v1_chr16_-_58663736 EF553522 AL832769	2345	-	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	2354	-	NM_001160305|SETD6|79918|SET domain containing 6##NM_024860|SETD6|79918|SET domain containing 6##AK127136|SETD6|79918|SET domain containing 6##BC110433|SETD6|79918|SET domain containing 6##AK304822|SETD6|79918|SET domain containing 6##AK290495|SETD6|79918|SET domain containing 6##AK309468|SETD6|79918|SET domain containing 6##BC022451|SETD6|79918|SET domain containing 6##AK024801|SETD6|79918|SET domain containing 6##AK297288|SETD6|79918|SET domain containing 6##AK055038|NDRG4|65009|NDRG family member 4##AB044944|NDRG4|65009|NDRG family member 4##AB044945|NDRG4|65009|NDRG family member 4##AK131248|NDRG4|65009|NDRG family member 4##AK296415|NDRG4|65009|NDRG family member 4##AK299949|NDRG4|65009|NDRG family member 4##AK316089|NDRG4|65009|NDRG family member 4##NM_001242833|NDRG4|65009|NDRG family member 4##NM_001242834|NDRG4|65009|NDRG family member 4##NM_001242835|NDRG4|65009|NDRG family member 4##NM_001242836|NDRG4|65009|NDRG family member 4##BC011795|NDRG4|65009|NDRG family member 4##AB033006|NDRG4|65009|NDRG family member 4##AL136584|NDRG4|65009|NDRG family member 4##BC001527|NDRG4|65009|NDRG family member 4##AM393094|NDRG4|65009|NDRG family member 4##AM393323|NDRG4|65009|NDRG family member 4##NM_022910|NDRG4|65009|NDRG family member 4##BX647815|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK300281|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK056927|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##BX537840|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##EF553522|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL832769|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1	0.999494	0.0	
chr2	113896284	113896464	reg1000269.p2	4.637	+	TSC_hg19_v1_chr2_+_113885174 AK290926 X52015 X53296 AB529162	-11170	+	NM_173842 TSC_hg19_v1_chr2_+_113885141	-11235	+	AF043143 NM_000577 NM_173841 NM_173843 M55646 AK290898 X84348 BC009745	-20857	+	AK290045 TSC_hg19_v1_chr2_+_113931556 AB208798 NM_012455	35180	+	TSC_hg19_v1_chr2_+_113931576 BC035307 BC073151	35207	+	TSC_hg19_v1_chr2_+_113993123 AK056052 AK307781 BX537688 AK056355 AK130275	96896	+	AK290926|IL1RN|3557|interleukin 1 receptor antagonist##X52015|IL1RN|3557|interleukin 1 receptor antagonist##X53296|IL1RN|3557|interleukin 1 receptor antagonist##NM_173842|IL1RN|3557|interleukin 1 receptor antagonist##AF043143|IL1RN|3557|interleukin 1 receptor antagonist##NM_000577|IL1RN|3557|interleukin 1 receptor antagonist##NM_173841|IL1RN|3557|interleukin 1 receptor antagonist##NM_173843|IL1RN|3557|interleukin 1 receptor antagonist##M55646|IL1RN|3557|interleukin 1 receptor antagonist##AK290898|IL1RN|3557|interleukin 1 receptor antagonist##X84348|IL1RN|3557|interleukin 1 receptor antagonist##BC009745|IL1RN|3557|interleukin 1 receptor antagonist##AK290045|PSD4|23550|pleckstrin and Sec7 domain containing 4##AB208798|PSD4|23550|pleckstrin and Sec7 domain containing 4##NM_012455|PSD4|23550|pleckstrin and Sec7 domain containing 4##BC035307|PSD4|23550|pleckstrin and Sec7 domain containing 4##BC073151|PSD4|23550|pleckstrin and Sec7 domain containing 4##AK056052|LOC654433|654433|uncharacterized LOC654433##AK307781|LOC654433|654433|uncharacterized LOC654433##BX537688|LOC654433|654433|uncharacterized LOC654433##AK056355|LOC654433|654433|uncharacterized LOC654433##AK130275|LOC654433|654433|uncharacterized LOC654433	0.0	0.0	
chr8	28205645	28205763	reg1005011.p1	4.637	+	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-30979	+	NM_018091 TSC_hg19_v1_chr8_+_27950679 AK302140 AK296475 AK022626 AK295574 AK001284 AK293424 AK315985 AK316053 AK298265 BC001240 AL834273 AB463602 AM392633	-255047	+	AB075870 NM_001010906	-264317	-	BC001237 TSC_hg19_v1_chr8_-_28243694	37938	-	AK002050 AK023418 NM_018660 AB057659 AB073627	38257	-	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	142075	-	NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##NM_018091|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK302140|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK296475|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK022626|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK295574|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK001284|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK293424|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK315985|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK316053|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK298265|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##BC001240|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AL834273|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AM392633|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AB075870|C8orf80|389643|chromosome 8 open reading frame 80##NM_001010906|C8orf80|389643|chromosome 8 open reading frame 80##BC001237|ZNF395|55893|zinc finger protein 395##AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16	1.942954	0.0	denovo_WM_7:78:0.893
chr14	50470470	50470642	reg1010404.p2	4.636	+	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-110150	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-110723	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	-110738	+	AK091232 AX746864 NM_001012706	3681	-	AF390030 NM_001014830	88804	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	112714	-	AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D	0.996806	0.0	denovo_WM_7:1:0.320	denovo_WM_7:2:0.303	denovo_WM_7:3:0.306
chr17	67499798	67499942	reg1011164.p1	4.636	+	TSC_hg19_v1_chr17_+_67498396 U39064	-1390	+	AK290747 NM_002758 U39065 AK225719 X96757 BC012009	-88994	+	TSC_hg19_v1_chr17_-_67323275 BC029426 AJ512612 AJ275973 AK292592 NM_172232	-176581	-	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	571560	+	BC033038 NM_170742	601124	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	665826	+	U39064|MAP2K6|5608|mitogen-activated protein kinase kinase 6##AK290747|MAP2K6|5608|mitogen-activated protein kinase kinase 6##NM_002758|MAP2K6|5608|mitogen-activated protein kinase kinase 6##U39065|MAP2K6|5608|mitogen-activated protein kinase kinase 6##AK225719|MAP2K6|5608|mitogen-activated protein kinase kinase 6##X96757|MAP2K6|5608|mitogen-activated protein kinase kinase 6##BC012009|MAP2K6|5608|mitogen-activated protein kinase kinase 6##BC029426|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ512612|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ275973|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AK292592|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_172232|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2	0.0	0.0	
chr20	49435065	49435160	reg1009476.p2	4.636	+	AF361220 NM_001010974 NM_017843 NM_198799 TSC_hg19_v1_chr20_+_49411542 AK000502 BC038381 BC047337 AJ511266 BC056883	-23594	+	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	-87043	+	TSC_hg19_v1_chr20_-_49308074 AK124347	-127035	-	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	112611	-	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	139951	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	140256	+	AF361220|BCAS4|55653|breast carcinoma amplified sequence 4##NM_001010974|BCAS4|55653|breast carcinoma amplified sequence 4##NM_017843|BCAS4|55653|breast carcinoma amplified sequence 4##NM_198799|BCAS4|55653|breast carcinoma amplified sequence 4##AK000502|BCAS4|55653|breast carcinoma amplified sequence 4##BC038381|BCAS4|55653|breast carcinoma amplified sequence 4##BC047337|BCAS4|55653|breast carcinoma amplified sequence 4##AJ511266|BCAS4|55653|breast carcinoma amplified sequence 4##BC056883|BCAS4|55653|breast carcinoma amplified sequence 4##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3	0.0	0.986843	CTCF.p2:-11:0.987
chr3	113364156	113364250	reg1010890.p1	4.636	+	NM_017699	-112986	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-130210	-	TSC_hg19_v1_chr3_-_113233690 AK296160	-130517	-	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	51209	-	AK296456 TSC_hg19_v1_chr3_-_113464788	100511	-	TSC_hg19_v1_chr3_-_113465043 CR749314 AK023090 AK307184 BC012731 AK311403 AK023256	100840	-	NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296160|SPICE1|152185|spindle and centriole associated protein 1##BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##CR749314|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023090|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK307184|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##BC012731|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023256|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	1.949878	0.0	denovo_WM_7:-39:0.249	denovo_WM_7:-40:0.249	denovo_WM_7:-41:0.249	denovo_WM_7:-42:0.249	denovo_WM_7:98:0.237	denovo_WM_7:104:0.316
chr3	185827150	185827255	reg1010759.p2	4.636	+	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	-346	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	-856	-	TSC_hg19_v1_chr3_-_185655843 AK315632 NM_001243879 NM_004593	-171324	-	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	252732	-	CU686840 AF161703 BC069478 AK314172 NM_017541	434938	-	TSC_hg19_v1_chr3_-_186285118 AK001422 BC025748	457906	-	BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##AK315632|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_001243879|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_004593|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AF161703|CRYGS|1427|crystallin, gamma S##BC069478|CRYGS|1427|crystallin, gamma S##AK314172|CRYGS|1427|crystallin, gamma S##NM_017541|CRYGS|1427|crystallin, gamma S##AK001422|TBCCD1|55171|TBCC domain containing 1##BC025748|TBCCD1|55171|TBCC domain containing 1	0.0	0.0	
chr9	102613719	102613899	reg1011100.p1	4.636	+	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	-29652	+	TSC_hg19_v1_chr9_-_102582187 AK057451	-31644	-	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-629222	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	55118	+	AK311412 TSC_hg19_v1_chr9_+_102668952	55143	+	TSC_hg19_v1_chr9_+_102668954 BC111009 AK000658 BC070269 AK095262 AL833620	55192	+	D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17##AK311412|STX17|55014|syntaxin 17##BC111009|STX17|55014|syntaxin 17##AK000658|STX17|55014|syntaxin 17##BC070269|STX17|55014|syntaxin 17##AK095262|STX17|55014|syntaxin 17##AL833620|STX17|55014|syntaxin 17	0.090252	0.0	
chr10	49891858	49892032	reg1012811.p2	4.635	+	TSC_hg19_v1_chr10_-_49864302 AK055937	-27640	-	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	-78858	-	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	-282273	+	TSC_hg19_v1_chr10_+_49892917 BC034937	945	+	AK127650 NM_020945	1570	+	NM_001006939 BC036722	230335	-	AK055937|ARHGAP22|58504|Rho GTPase activating protein 22##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##BC034937|WDFY4|57705|WDFY family member 4##AK127650|WDFY4|57705|WDFY family member 4##NM_020945|WDFY4|57705|WDFY family member 4##NM_001006939|LRRC18|474354|leucine rich repeat containing 18##BC036722|LRRC18|474354|leucine rich repeat containing 18	1.878197	0.0	denovo_WM_7:-17:0.831	denovo_WM_7:-32:0.280	denovo_WM_7:-35:0.499
chr11	354525	354617	reg1000813.p1	4.635	+	TSC_hg19_v1_chr11_-_320925 X57352	-33584	-	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	-33727	-	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	-40560	+	TSC_hg19_v1_chr11_+_369724 NM_178537 AB089939 BC131528	15194	+	TSC_hg19_v1_chr11_+_394208 BC000081 NM_007183 AK025067 AK223511 Z98265	39641	+	AF053719 TSC_hg19_v1_chr11_+_394242 DQ891692 DQ894875 CU674026	39693	+	X57352|IFITM3|10410|interferon induced transmembrane protein 3##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_178537|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##AB089939|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC131528|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC000081|PKP3|11187|plakophilin 3##NM_007183|PKP3|11187|plakophilin 3##AK025067|PKP3|11187|plakophilin 3##AK223511|PKP3|11187|plakophilin 3##Z98265|PKP3|11187|plakophilin 3##AF053719|PKP3|11187|plakophilin 3##DQ891692|PKP3|11187|plakophilin 3##DQ894875|PKP3|11187|plakophilin 3	1.044365	0.0	denovo_WM_7:-59:0.324
chr12	12808955	12809081	reg1011532.p1	4.635	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-44135	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-44223	+	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	-93618	-	AK096388 NM_006143	40102	-	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	61108	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	69838	+	BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1	0.0	0.500008	CTCF.p2:31:0.500
chr4	6900883	6901061	reg1012290.p2	4.635	+	TSC_hg19_v1_chr4_+_6784518 AK124715 EF553521	-116444	+	TSC_hg19_v1_chr4_+_6784467 BC150286 D86985	-116498	+	TSC_hg19_v1_chr4_+_6784458 NM_001100590 NM_014743	-116517	+	TSC_hg19_v1_chr4_+_6911192 NM_001113361	10180	+	TSC_hg19_v1_chr4_-_6911379 BC032036	10433	-	TSC_hg19_v1_chr4_+_6911497 NM_020773	10504	+	AK124715|KIAA0232|9778|KIAA0232##EF553521|KIAA0232|9778|KIAA0232##BC150286|KIAA0232|9778|KIAA0232##D86985|KIAA0232|9778|KIAA0232##NM_001100590|KIAA0232|9778|KIAA0232##NM_014743|KIAA0232|9778|KIAA0232##NM_001113361|TBC1D14|57533|TBC1 domain family, member 14##NM_020773|TBC1D14|57533|TBC1 domain family, member 14	0.992177	0.0	
chr6_ssto_hap7	3446133	3446306	reg1009599.p1	4.635	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr7	25429292	25429445	reg1011997.p1	4.635	+	AB040290 AF330057 AF440392 NM_022150	-161288	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-209497	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	-264428	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	762565	+	TSC_hg19_v1_chr7_-_26232151 BX538099	802783	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	810973	-	AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.998189	0.8368	denovo_WM_7:9:0.719	CTCF.p2:-44:0.837
chr11	3878248	3878428	reg1012127.p2	4.634	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-1409	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-16139	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-16183	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	237651	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	237728	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	237821	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	1.017978	0.0	denovo_WM_7:8:0.830
chr1	154968307	154968412	reg1007643.p1	4.634	+	AF268478 BC069140 NM_018655 BC096714 BC098148 BC098246 BC098253 AB451457	-2287	+	BC011378 TSC_hg19_v1_chr1_+_154955840 AK025979 AF218022 AF520568 BC021096	-12512	+	NM_001184891 NM_001184892 NM_025207 NM_201398 TSC_hg19_v1_chr1_+_154955827 AK090542 AX746501 BC032323 AK308243	-12556	+	TSC_hg19_v1_chr1_+_154975120 NM_001252405 NM_015872 AK291619 CR749303 BC012070	6727	+	NM_001252406 TSC_hg19_v1_chr1_+_154975235 AK304762	6888	+	BC111794 AK057496 NM_144622	37886	-	AF268478|LENEP|55891|lens epithelial protein##BC069140|LENEP|55891|lens epithelial protein##NM_018655|LENEP|55891|lens epithelial protein##BC096714|LENEP|55891|lens epithelial protein##BC098148|LENEP|55891|lens epithelial protein##BC098246|LENEP|55891|lens epithelial protein##BC098253|LENEP|55891|lens epithelial protein##AB451457|LENEP|55891|lens epithelial protein##BC011378|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK025979|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF218022|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AF520568|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC021096|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_001184891|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_001184892|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_025207|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_201398|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK090542|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##BC032323|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##AK308243|FLAD1|80308|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)##NM_001252405|ZBTB7B|51043|zinc finger and BTB domain containing 7B##NM_015872|ZBTB7B|51043|zinc finger and BTB domain containing 7B##AK291619|ZBTB7B|51043|zinc finger and BTB domain containing 7B##CR749303|ZBTB7B|51043|zinc finger and BTB domain containing 7B##BC012070|ZBTB7B|51043|zinc finger and BTB domain containing 7B##NM_001252406|ZBTB7B|51043|zinc finger and BTB domain containing 7B##AK304762|ZBTB7B|51043|zinc finger and BTB domain containing 7B##BC111794|DCST2|127579|DC-STAMP domain containing 2##AK057496|DCST2|127579|DC-STAMP domain containing 2##NM_144622|DCST2|127579|DC-STAMP domain containing 2	0.995123	0.57641	CTCF.p2:-13:0.576
chr21	33508464	33508576	reg1009420.p2	4.634	+	TSC_hg19_v1_chr21_+_33245863 AJ271722 NM_014586	-262800	+	TSC_hg19_v1_chr21_-_33104407 BC014921 NM_001145444 NM_001145445 NM_020706	-404084	-	BC043353 TSC_hg19_v1_chr21_-_33104396	-404127	-	CU692128 TSC_hg19_v1_chr21_-_33651338 AF387845 AF231921 AK075281 BC042917 NM_018944 AK312073	142875	-	AF454915 AF454916 NM_178817 NM_206898	155603	+	AF231919 TSC_hg19_v1_chr21_-_33765328 NM_014825	256736	-	AJ271722|HUNK|30811|hormonally up-regulated Neu-associated kinase##NM_014586|HUNK|30811|hormonally up-regulated Neu-associated kinase##BC014921|SCAF4|57466|SR-related CTD-associated factor 4##NM_001145444|SCAF4|57466|SR-related CTD-associated factor 4##NM_001145445|SCAF4|57466|SR-related CTD-associated factor 4##NM_020706|SCAF4|57466|SR-related CTD-associated factor 4##BC043353|SCAF4|57466|SR-related CTD-associated factor 4##AF387845|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AF231921|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AK075281|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##BC042917|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##NM_018944|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AK312073|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AF454915|MRAP|56246|melanocortin 2 receptor accessory protein##AF454916|MRAP|56246|melanocortin 2 receptor accessory protein##NM_178817|MRAP|56246|melanocortin 2 receptor accessory protein##NM_206898|MRAP|56246|melanocortin 2 receptor accessory protein##AF231919|URB1|9875|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)##NM_014825|URB1|9875|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	0.999139	0.0	denovo_WM_7:-11:0.541	denovo_WM_7:-14:0.219
chr3	186784705	186784819	reg1007213.p1	4.634	+	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-45090	+	U67847 TSC_hg19_v1_chr3_+_186714361	-70414	+	X17247 TSC_hg19_v1_chr3_+_186648632	-136185	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	72494	-	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	130580	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	224877	-	AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X17247|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)	0.0	0.0	
chr6	16432812	16432942	reg1007195.p1	4.634	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-194026	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-289567	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-303440	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	328820	-	NM_001190766	669611	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	848977	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	1.860553	0.0	denovo_WM_7:42:0.317	denovo_WM_7:45:0.542
chr7	16460170	16460305	reg1012468.p1	4.634	+	TSC_hg19_v1_chr7_-_15726309 AK309472 X82629 NM_005924	-733946	-	AB463880 CR536553 CU677801 L36328 TSC_hg19_v1_chr7_-_15726203 BC017021 AK313386	-734108	-	BC108676 AK131284 NM_001004320	-858631	-	NM_001101417 NM_001101426	709	-	AB059270 CU678977 AB590718 AK315682 BC008484 AF361494 NM_015464	45145	-	NM_001195280	106267	+	AK309472|MEOX2|4223|mesenchyme homeobox 2##X82629|MEOX2|4223|mesenchyme homeobox 2##NM_005924|MEOX2|4223|mesenchyme homeobox 2##CR536553|MEOX2|4223|mesenchyme homeobox 2##L36328|MEOX2|4223|mesenchyme homeobox 2##BC017021|MEOX2|4223|mesenchyme homeobox 2##AK313386|MEOX2|4223|mesenchyme homeobox 2##BC108676|AGMO|392636|alkylglycerol monooxygenase##AK131284|AGMO|392636|alkylglycerol monooxygenase##NM_001004320|AGMO|392636|alkylglycerol monooxygenase##NM_001101417|ISPD|729920|isoprenoid synthase domain containing##NM_001101426|ISPD|729920|isoprenoid synthase domain containing##AB059270|SOSTDC1|25928|sclerostin domain containing 1##AK315682|SOSTDC1|25928|sclerostin domain containing 1##BC008484|SOSTDC1|25928|sclerostin domain containing 1##AF361494|SOSTDC1|25928|sclerostin domain containing 1##NM_015464|SOSTDC1|25928|sclerostin domain containing 1##NM_001195280|LRRC72|100506049|leucine rich repeat containing 72	0.0	0.0	
chr1	206736366	206736546	reg1007103.p2	4.633	+	TSC_hg19_v1_chr1_+_206730897 CU692112 EU831661	-5559	+	AL832784 AY261332 AK292039 TSC_hg19_v1_chr1_+_206730613	-5848	+	TSC_hg19_v1_chr1_+_206730542 BC042651 AY216268	-5936	+	DQ891590 DQ894784 TSC_hg19_v1_chr1_-_206785812 BC039134 BC058905 AK225259 BC001585 AF220417 AF262403 AK294536 AK001852	49299	-	TSC_hg19_v1_chr1_-_206785905 NM_001201478 NM_006893	49427	-	TSC_hg19_v1_chr1_+_206808880 AK291189 AK308082 AK313245 NM_001004023 NM_003582 BC048258 AY590695 Y12735 AF186773 BC015501	72388	+	EU831661|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AL832784|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY261332|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK292039|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC042651|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY216268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ891590|EIF2D|1939|eukaryotic translation initiation factor 2D##DQ894784|EIF2D|1939|eukaryotic translation initiation factor 2D##BC039134|EIF2D|1939|eukaryotic translation initiation factor 2D##BC058905|EIF2D|1939|eukaryotic translation initiation factor 2D##AK225259|EIF2D|1939|eukaryotic translation initiation factor 2D##BC001585|EIF2D|1939|eukaryotic translation initiation factor 2D##AF220417|EIF2D|1939|eukaryotic translation initiation factor 2D##AF262403|EIF2D|1939|eukaryotic translation initiation factor 2D##AK294536|EIF2D|1939|eukaryotic translation initiation factor 2D##AK001852|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_001201478|EIF2D|1939|eukaryotic translation initiation factor 2D##NM_006893|EIF2D|1939|eukaryotic translation initiation factor 2D##AK291189|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK308082|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AK313245|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_001004023|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##NM_003582|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY590695|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##Y12735|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186773|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##BC015501|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	0.0	0.0	
chr13	91708347	91708464	reg1000320.p1	4.633	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-3383536	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-5334966	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-7251905	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	342499	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	2171022	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	3423421	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	0.992602	0.0	denovo_WM_7:20:0.554	denovo_WM_7:22:0.323
chr14	91279976	91280096	reg1013625.p1	4.633	+	TSC_hg19_v1_chr14_+_90863372 BC011834 BC047523 U16851 BC000454 BC008597 AK289937 M27319	-416609	+	TSC_hg19_v1_chr14_+_90863329 NM_006888	-416713	+	BC008925 BC033136 BC098568 TSC_hg19_v1_chr14_-_90798286 AK000870 AK294958 BC021805 NM_017970	-481670	-	AB527232 TSC_hg19_v1_chr14_-_91282750	2662	-	NM_001010854 TSC_hg19_v1_chr14_-_91282765	2729	-	TSC_hg19_v1_chr14_-_91526731 CU677851	246718	-	BC011834|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC047523|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##U16851|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC000454|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008597|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AK289937|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##M27319|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##NM_006888|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008925|C14orf102|55051|chromosome 14 open reading frame 102##BC033136|C14orf102|55051|chromosome 14 open reading frame 102##BC098568|C14orf102|55051|chromosome 14 open reading frame 102##AK000870|C14orf102|55051|chromosome 14 open reading frame 102##AK294958|C14orf102|55051|chromosome 14 open reading frame 102##BC021805|C14orf102|55051|chromosome 14 open reading frame 102##NM_017970|C14orf102|55051|chromosome 14 open reading frame 102##NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B	0.99821	0.0	denovo_WM_7:-11:0.772
chr16	85768947	85769127	reg1008414.p1	4.633	+	BC003186 NM_016095 TSC_hg19_v1_chr16_-_85722590	-46438	-	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	-46495	-	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	-122084	+	TSC_hg19_v1_chr16_-_85784703 NM_206967	15651	-	BT007132 CU675661 AF005888 TSC_hg19_v1_chr16_-_85833151 BC007445 BC001472 BC005886 BC020250 AK313977 NM_001142288 NM_006067	64004	-	NM_001861 TSC_hg19_v1_chr16_+_85833279 BC047869 U90915	64196	+	BC003186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_016095|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##NM_206967|C16orf74|404550|chromosome 16 open reading frame 74##BT007132|COX4NB|10328|COX4 neighbor##AF005888|COX4NB|10328|COX4 neighbor##BC007445|COX4NB|10328|COX4 neighbor##BC001472|COX4NB|10328|COX4 neighbor##BC005886|COX4NB|10328|COX4 neighbor##BC020250|COX4NB|10328|COX4 neighbor##AK313977|COX4NB|10328|COX4 neighbor##NM_001142288|COX4NB|10328|COX4 neighbor##NM_006067|COX4NB|10328|COX4 neighbor##NM_001861|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC047869|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##U90915|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1	0.0	0.0	
chr6	83094981	83095115	reg1010209.p1	4.633	+	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	-21071	+	TSC_hg19_v1_chr6_+_83073565 BC037161 AK074786	-21515	+	AK291170 NM_006670	-22126	+	TSC_hg19_v1_chr6_-_83775541 BC101512 BC101538 BC143617 BC036049 AB126062 NM_198920 BC053645 AK298205 BC057845	680477	-	TSC_hg19_v1_chr6_+_83777389 BX648667 NM_001199942 NM_015018 AK094766	682349	+	AF102265 AB032081 AF180371 TSC_hg19_v1_chr6_-_83902977 AK314512 AK225363 AK001365 AK023432 BC001258 NM_001199918 NM_001199919 NM_015599	807924	-	AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein##BC037161|TPBG|7162|trophoblast glycoprotein##AK074786|TPBG|7162|trophoblast glycoprotein##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein##BC101512|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC101538|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC143617|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC036049|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AB126062|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##NM_198920|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC053645|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK298205|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC057845|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BX648667|DOPEY1|23033|dopey family member 1##NM_001199942|DOPEY1|23033|dopey family member 1##NM_015018|DOPEY1|23033|dopey family member 1##AK094766|DOPEY1|23033|dopey family member 1##AF102265|PGM3|5238|phosphoglucomutase 3##AB032081|PGM3|5238|phosphoglucomutase 3##AF180371|PGM3|5238|phosphoglucomutase 3##AK314512|PGM3|5238|phosphoglucomutase 3##AK225363|PGM3|5238|phosphoglucomutase 3##AK001365|PGM3|5238|phosphoglucomutase 3##AK023432|PGM3|5238|phosphoglucomutase 3##BC001258|PGM3|5238|phosphoglucomutase 3##NM_001199918|PGM3|5238|phosphoglucomutase 3##NM_001199919|PGM3|5238|phosphoglucomutase 3##NM_015599|PGM3|5238|phosphoglucomutase 3	0.0	0.011931	
chrX	118752017	118752197	reg1010349.p1	4.633	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-12279	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-25125	-	BC042021 NM_181777	-37810	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	74978	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	75025	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	75072	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.9951	0.0	
chr15	74213108	74213210	reg1013536.p2	4.632	+	BC033516 NM_153356 AB449907	-47151	+	BC111368 NM_001039614	-169344	-	TSC_hg19_v1_chr15_+_73976784 AK296358 AK291721 AK309728	-236374	+	TSC_hg19_v1_chr15_+_74218789 NM_005576	5630	+	TSC_hg19_v1_chr15_+_74218802 BC068542 AK303982 AK314222	5642	+	TSC_hg19_v1_chr15_+_74218813 BC015090 L21186	5656	+	BC033516|TBC1D21|161514|TBC1 domain family, member 21##NM_153356|TBC1D21|161514|TBC1 domain family, member 21##AB449907|TBC1D21|161514|TBC1 domain family, member 21##BC111368|C15orf59|388135|chromosome 15 open reading frame 59##NM_001039614|C15orf59|388135|chromosome 15 open reading frame 59##AK296358|CD276|80381|CD276 molecule##AK291721|CD276|80381|CD276 molecule##AK309728|CD276|80381|CD276 molecule##NM_005576|LOXL1|4016|lysyl oxidase-like 1##BC068542|LOXL1|4016|lysyl oxidase-like 1##AK303982|LOXL1|4016|lysyl oxidase-like 1##AK314222|LOXL1|4016|lysyl oxidase-like 1##BC015090|LOXL1|4016|lysyl oxidase-like 1##L21186|LOXL1|4016|lysyl oxidase-like 1	0.799341	0.0	denovo_WM_7:52:0.786
chr19	39348118	39348288	reg1012414.p1	4.632	+	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	-5227	-	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-7578	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-7627	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	20707	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	42098	+	TSC_hg19_v1_chr19_-_39390229 AK314492 AB009274 AF160214 AY030277 AF095714 AK025876 AK225824 AK054642 AK094810 BC003012 BC003547 AF083107 NM_012237 NM_001193286 NM_030593	42131	-	AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK314492|SIRT2|22933|sirtuin 2##AB009274|SIRT2|22933|sirtuin 2##AF160214|SIRT2|22933|sirtuin 2##AY030277|SIRT2|22933|sirtuin 2##AF095714|SIRT2|22933|sirtuin 2##AK025876|SIRT2|22933|sirtuin 2##AK225824|SIRT2|22933|sirtuin 2##AK054642|SIRT2|22933|sirtuin 2##AK094810|SIRT2|22933|sirtuin 2##BC003012|SIRT2|22933|sirtuin 2##BC003547|SIRT2|22933|sirtuin 2##AF083107|SIRT2|22933|sirtuin 2##NM_012237|SIRT2|22933|sirtuin 2##NM_001193286|SIRT2|22933|sirtuin 2##NM_030593|SIRT2|22933|sirtuin 2	0.0	0.0	
chr10	6621543	6621703	reg1009532.p1	4.631	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-376747	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-434711	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-434739	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	638	-	TSC_hg19_v1_chr10_+_6622460 AY007155	857	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	829627	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.996152	0.0	denovo_WM_7:-2:0.438	denovo_WM_7:-3:0.438
chr12	102278106	102278212	reg1011455.p2	4.631	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	-6701	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	-7041	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-53573	-	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	177591	-	TSC_hg19_v1_chr12_-_102455791 BC010889	177618	-	TSC_hg19_v1_chr12_-_102455912 AK314970 AK223339 AF151874 AF155655 NM_016053	177702	-	AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##CR457171|CCDC53|51019|coiled-coil domain containing 53##BC010889|CCDC53|51019|coiled-coil domain containing 53##AK314970|CCDC53|51019|coiled-coil domain containing 53##AK223339|CCDC53|51019|coiled-coil domain containing 53##AF151874|CCDC53|51019|coiled-coil domain containing 53##AF155655|CCDC53|51019|coiled-coil domain containing 53##NM_016053|CCDC53|51019|coiled-coil domain containing 53	0.995286	0.0	
chr18	61870862	61870960	reg1018077.p2	4.631	+	NM_001031848 NM_002640 NM_198833 AK300391 L40377 TSC_hg19_v1_chr18_+_61637345 BC034528 U92984 BX571754 AK313782	-233598	+	NM_001123366	-254324	+	BC096217 BC096218 BC096219 BC096220 NM_005024 U35459	-288167	+	AJ007611 NM_033646	1546576	+	TSC_hg19_v1_chr18_+_63417845 BC036786	1546955	+	AB035301 NM_004361 TSC_hg19_v1_chr18_+_63418247	1547291	+	NM_001031848|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_002640|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_198833|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK300391|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##L40377|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BC034528|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##U92984|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BX571754|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK313782|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_001123366|HMSD|284293|histocompatibility (minor) serpin domain containing##BC096217|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096218|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096219|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096220|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_005024|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##U35459|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##AJ007611|CDH7|1005|cadherin 7, type 2##NM_033646|CDH7|1005|cadherin 7, type 2##BC036786|CDH7|1005|cadherin 7, type 2##AB035301|CDH7|1005|cadherin 7, type 2##NM_004361|CDH7|1005|cadherin 7, type 2	0.0	0.0	
chr1	46770925	46771065	reg1012945.p2	4.630	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-1608	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-1947	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-1978	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	35448	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	88981	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	201677	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.998103	0.0	
chr19	2462611	2462791	reg1012409.p2	4.630	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-5741	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-5765	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	-5811	-	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	13537	+	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	239994	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	240041	-	NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2##NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7	0.995661	0.0	
chr19	4837739	4837892	reg1009088.p1	4.630	+	TSC_hg19_v1_chr19_-_4831725 BC035331 NM_182919	-6090	-	AF070530 TSC_hg19_v1_chr19_-_4817612	-20257	-	TSC_hg19_v1_chr19_+_4791757 AK074232 BC004988 AY356352 EU446817 AB384759 AJ311359	-46003	+	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	29830	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	29850	-	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	29927	-	BC035331|TICAM1|148022|toll-like receptor adaptor molecule 1##NM_182919|TICAM1|148022|toll-like receptor adaptor molecule 1##AF070530|TICAM1|148022|toll-like receptor adaptor molecule 1##AK074232|FEM1A|55527|fem-1 homolog a (C. elegans)##BC004988|FEM1A|55527|fem-1 homolog a (C. elegans)##AY356352|FEM1A|55527|fem-1 homolog a (C. elegans)##EU446817|FEM1A|55527|fem-1 homolog a (C. elegans)##AJ311359|FEM1A|55527|fem-1 homolog a (C. elegans)##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3	0.0	0.0	
chr7	126299383	126299504	reg1011606.p1	4.630	+	NM_001042594 NM_015450	-1729407	-	BC130600 BC130604 NM_001024603	-1868641	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1893647	-	NM_000845	584125	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	592922	-	TSC_hg19_v1_chr7_-_126893165 AK290197	593709	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.0	0.0	
chr11	71163236	71163410	reg1007691.p1	4.629	+	TSC_hg19_v1_chr11_-_71159471 AK303881 NM_001163817 NM_001360	-3861	-	TSC_hg19_v1_chr11_-_71159417 AF034544 BC000054 AK312775 AK289497	-3918	-	TSC_hg19_v1_chr11_-_70963627 AK096045	-199698	-	NM_018161 TSC_hg19_v1_chr11_+_71164256 AK022436 BC003638 BC003666	913	+	AK225700 TSC_hg19_v1_chr11_+_71164286 AK001493 AB091316 CR457286	979	+	AB126076 NM_001012503 BC136967 BC136968 AB528865 BC119736	75006	+	AK303881|DHCR7|1717|7-dehydrocholesterol reductase##NM_001163817|DHCR7|1717|7-dehydrocholesterol reductase##NM_001360|DHCR7|1717|7-dehydrocholesterol reductase##AF034544|DHCR7|1717|7-dehydrocholesterol reductase##BC000054|DHCR7|1717|7-dehydrocholesterol reductase##AK312775|DHCR7|1717|7-dehydrocholesterol reductase##AK289497|DHCR7|1717|7-dehydrocholesterol reductase##AK096045|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##NM_018161|NADSYN1|55191|NAD synthetase 1##AK022436|NADSYN1|55191|NAD synthetase 1##BC003638|NADSYN1|55191|NAD synthetase 1##BC003666|NADSYN1|55191|NAD synthetase 1##AK225700|NADSYN1|55191|NAD synthetase 1##AK001493|NADSYN1|55191|NAD synthetase 1##AB091316|NADSYN1|55191|NAD synthetase 1##CR457286|NADSYN1|55191|NAD synthetase 1##AB126076|KRTAP5-7|440050|keratin associated protein 5-7##NM_001012503|KRTAP5-7|440050|keratin associated protein 5-7##BC136967|KRTAP5-7|440050|keratin associated protein 5-7##BC136968|KRTAP5-7|440050|keratin associated protein 5-7	0.466178	0.0	denovo_WM_7:20:0.466
chr15	41074933	41075050	reg1013177.p1	4.629	+	NM_001130448 BC027487 AK291344	-12774	+	TSC_hg19_v1_chr15_+_41056274 AK223430 AK311872 NM_005258 BC112262 BC112264 BC143904 HQ258032	-18683	+	TSC_hg19_v1_chr15_-_41047453 AK001441 NM_018145 AK123192	-27527	-	TSC_hg19_v1_chr15_+_41099254 NM_001077268 AK122779 BC015738 AF445414	24351	+	AB528922 AK001496 AK308659 TSC_hg19_v1_chr15_-_41099659 BC000048	24662	-	TSC_hg19_v1_chr15_-_41099672 AK308858 AK309307 AK310140 NM_018163	24683	-	NM_001130448|C15orf62|643338|chromosome 15 open reading frame 62##BC027487|C15orf62|643338|chromosome 15 open reading frame 62##AK291344|C15orf62|643338|chromosome 15 open reading frame 62##AK223430|GCHFR|2644|GTP cyclohydrolase I feedback regulator##AK311872|GCHFR|2644|GTP cyclohydrolase I feedback regulator##NM_005258|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112262|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112264|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC143904|GCHFR|2644|GTP cyclohydrolase I feedback regulator##HQ258032|GCHFR|2644|GTP cyclohydrolase I feedback regulator##AK001441|FAM82A2|55177|family with sequence similarity 82, member A2##NM_018145|FAM82A2|55177|family with sequence similarity 82, member A2##AK123192|FAM82A2|55177|family with sequence similarity 82, member A2##NM_001077268|ZFYVE19|84936|zinc finger, FYVE domain containing 19##AK122779|ZFYVE19|84936|zinc finger, FYVE domain containing 19##BC015738|ZFYVE19|84936|zinc finger, FYVE domain containing 19##AF445414|ZFYVE19|84936|zinc finger, FYVE domain containing 19##AK001496|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17##AK308659|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17##BC000048|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17##AK308858|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17##AK309307|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17##AK310140|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17##NM_018163|DNAJC17|55192|DnaJ (Hsp40) homolog, subfamily C, member 17	0.0	0.991294	CTCF.p2:19:0.991
chr1	93004103	93004281	reg1016233.p2	4.629	+	U67369 NM_005263 TSC_hg19_v1_chr1_-_92952458	-51742	-	BC032751 TSC_hg19_v1_chr1_-_92951630 NM_001127216	-52577	-	TSC_hg19_v1_chr1_-_92949508 AK123009	-54660	-	AB449875 AB587441 AF008915 AF042345 NM_005665	253763	-	TSC_hg19_v1_chr1_+_93297596 NM_000969 AK092963 AK095815 AK314720 AB055762	293372	+	TSC_hg19_v1_chr1_+_93297612 BC109370	293413	+	U67369|GFI1|2672|growth factor independent 1 transcription repressor##NM_005263|GFI1|2672|growth factor independent 1 transcription repressor##BC032751|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127216|GFI1|2672|growth factor independent 1 transcription repressor##AK123009|GFI1|2672|growth factor independent 1 transcription repressor##AB449875|EVI5|7813|ecotropic viral integration site 5##AF008915|EVI5|7813|ecotropic viral integration site 5##NM_005665|EVI5|7813|ecotropic viral integration site 5##NM_000969|RPL5|6125|ribosomal protein L5##AK092963|RPL5|6125|ribosomal protein L5##AK095815|RPL5|6125|ribosomal protein L5##AK314720|RPL5|6125|ribosomal protein L5##AB055762|RPL5|6125|ribosomal protein L5##BC109370|RPL5|6125|ribosomal protein L5	0.013179	0.0	
chr21	46336741	46336848	reg1011516.p1	4.629	+	TSC_hg19_v1_chr21_+_46293937 BC092510	-42834	+	TSC_hg19_v1_chr21_-_46293609 AK315626 AK299204 AF149785 NM_004339	-43081	-	TSC_hg19_v1_chr21_-_46293607 BC012858 AK298557	-43191	-	TSC_hg19_v1_chr21_-_46340815 L78790 AK303488 M15395 AK128344	4003	-	AK222505 TSC_hg19_v1_chr21_-_46340824	4037	-	AB208909 TSC_hg19_v1_chr21_-_46340890 NM_000211	4125	-	AK315626|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##AK299204|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##AF149785|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##NM_004339|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##BC012858|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##AK298557|PTTG1IP|754|pituitary tumor-transforming 1 interacting protein##L78790|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK303488|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##M15395|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK128344|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK222505|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AB208909|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_000211|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)	0.998162	0.0	denovo_WM_7:0:0.728
chr5	139428807	139428953	reg1012309.p2	4.629	+	U92987 TSC_hg19_v1_chr5_-_139422858 AB005060 AK124504 NM_001184935 NM_004883 NM_013981 NM_013982 NM_013983	-6035	-	BC103983 BC103984 BC114333 BC114334 TSC_hg19_v1_chr5_-_139422732	-6152	-	TSC_hg19_v1_chr5_+_139175392 AL136559 NM_032289 BC038233	-253474	+	TSC_hg19_v1_chr5_+_139493703 M96684 NM_005859 BC110574 BC110594 BC036087 AB464679 BT019388	64847	+	BC041380 NM_001007189	76639	+	TSC_hg19_v1_chr5_+_139554672 NM_032412	125774	+	U92987|NRG2|9542|neuregulin 2##AB005060|NRG2|9542|neuregulin 2##AK124504|NRG2|9542|neuregulin 2##NM_001184935|NRG2|9542|neuregulin 2##NM_004883|NRG2|9542|neuregulin 2##NM_013981|NRG2|9542|neuregulin 2##NM_013982|NRG2|9542|neuregulin 2##NM_013983|NRG2|9542|neuregulin 2##BC103983|NRG2|9542|neuregulin 2##BC103984|NRG2|9542|neuregulin 2##BC114333|NRG2|9542|neuregulin 2##BC114334|NRG2|9542|neuregulin 2##AL136559|PSD2|84249|pleckstrin and Sec7 domain containing 2##NM_032289|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC038233|PSD2|84249|pleckstrin and Sec7 domain containing 2##M96684|PURA|5813|purine-rich element binding protein A##NM_005859|PURA|5813|purine-rich element binding protein A##BC110574|PURA|5813|purine-rich element binding protein A##BC110594|PURA|5813|purine-rich element binding protein A##BC036087|PURA|5813|purine-rich element binding protein A##BT019388|PURA|5813|purine-rich element binding protein A##BC041380|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_001007189|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_032412|C5orf32|84418|chromosome 5 open reading frame 32	0.0	0.0	
chr1	156075948	156076046	reg1013287.p1	4.628	+	TSC_hg19_v1_chr1_+_156052358 AK056143	-23624	+	AY950677 NM_001093725 TSC_hg19_v1_chr1_-_156051805	-24199	-	AF274025 BC009831 NM_020387 BC033322 AF083124	-45024	+	TSC_hg19_v1_chr1_+_156084501 NM_005572 NM_170707 NM_170708 X03444 X03445 AK026584 AK122732 AY357727 BC014507 BC033088 BC000511	8496	+	TSC_hg19_v1_chr1_+_156084553 BC003162 AK130179	8554	+	TSC_hg19_v1_chr1_+_156084568 M13451	8573	+	AK056143|LMNA|4000|lamin A/C##AY950677|MEX3A|92312|mex-3 homolog A (C. elegans)##NM_001093725|MEX3A|92312|mex-3 homolog A (C. elegans)##AF274025|RAB25|57111|RAB25, member RAS oncogene family##BC009831|RAB25|57111|RAB25, member RAS oncogene family##NM_020387|RAB25|57111|RAB25, member RAS oncogene family##BC033322|RAB25|57111|RAB25, member RAS oncogene family##AF083124|RAB25|57111|RAB25, member RAS oncogene family##NM_005572|LMNA|4000|lamin A/C##NM_170707|LMNA|4000|lamin A/C##NM_170708|LMNA|4000|lamin A/C##X03444|LMNA|4000|lamin A/C##X03445|LMNA|4000|lamin A/C##AK026584|LMNA|4000|lamin A/C##AK122732|LMNA|4000|lamin A/C##AY357727|LMNA|4000|lamin A/C##BC014507|LMNA|4000|lamin A/C##BC033088|LMNA|4000|lamin A/C##BC000511|LMNA|4000|lamin A/C##BC003162|LMNA|4000|lamin A/C##AK130179|LMNA|4000|lamin A/C##M13451|LMNA|4000|lamin A/C	0.99718	0.0	denovo_WM_7:-63:0.976
chr1	182590102	182590282	reg1011807.p2	4.628	+	AF493937 BT006638 CU675307 AB528682 U94829 U70426 BC006243 TSC_hg19_v1_chr1_-_182573525 AK301261 AK311880 NM_002928	-16722	-	CU675308 TSC_hg19_v1_chr1_+_182569465	-20746	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	-31809	-	BC069677 BC069718 BC103865 BC103866 BC103867 AF297015 NM_001102450 NM_033345	51849	-	NM_001200050 NM_001200051 NM_001200052 NM_001200056 NM_030769 BC042003	168392	+	BC034966 AK313225 BC058003 TSC_hg19_v1_chr1_+_182758907 AK297017 AK301068 AY336748	168699	+	AF493937|RGS16|6004|regulator of G-protein signaling 16##BT006638|RGS16|6004|regulator of G-protein signaling 16##U94829|RGS16|6004|regulator of G-protein signaling 16##U70426|RGS16|6004|regulator of G-protein signaling 16##BC006243|RGS16|6004|regulator of G-protein signaling 16##AK301261|RGS16|6004|regulator of G-protein signaling 16##AK311880|RGS16|6004|regulator of G-protein signaling 16##NM_002928|RGS16|6004|regulator of G-protein signaling 16##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC069677|RGS8|85397|regulator of G-protein signaling 8##BC069718|RGS8|85397|regulator of G-protein signaling 8##BC103865|RGS8|85397|regulator of G-protein signaling 8##BC103866|RGS8|85397|regulator of G-protein signaling 8##BC103867|RGS8|85397|regulator of G-protein signaling 8##AF297015|RGS8|85397|regulator of G-protein signaling 8##NM_001102450|RGS8|85397|regulator of G-protein signaling 8##NM_033345|RGS8|85397|regulator of G-protein signaling 8##NM_001200050|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200051|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200052|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200056|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_030769|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC042003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC034966|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK313225|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC058003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK297017|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK301068|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AY336748|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)	2.792189	0.0	denovo_WM_7:-48:0.955	denovo_WM_7:-63:0.973	denovo_WM_7:99:0.659
chr1	38455761	38455885	reg1008816.p1	4.628	+	AB464245 CU677944 DQ891120 EU176559 U08815 AK222554 AK301424 TSC_hg19_v1_chr1_-_38455660 AK291181 BC002395 AK292116 BC011523 NM_006802	-125	-	TSC_hg19_v1_chr1_-_38412726 NM_005540	-43094	-	TSC_hg19_v1_chr1_-_38412723 M74161	-43102	-	TSC_hg19_v1_chr1_-_38471187 BC014501 BC001351 BC011697 AK309179 AK290641 NM_001243878 NM_004468	15410	-	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	22562	+	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	22607	+	DQ891120|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##EU176559|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##U08815|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##AK222554|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##AK301424|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##AK291181|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##BC002395|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##AK292116|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##BC011523|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##NM_006802|SF3A3|10946|splicing factor 3a, subunit 3, 60kDa##NM_005540|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##M74161|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC014501|FHL3|2275|four and a half LIM domains 3##BC001351|FHL3|2275|four and a half LIM domains 3##BC011697|FHL3|2275|four and a half LIM domains 3##AK309179|FHL3|2275|four and a half LIM domains 3##AK290641|FHL3|2275|four and a half LIM domains 3##NM_001243878|FHL3|2275|four and a half LIM domains 3##NM_004468|FHL3|2275|four and a half LIM domains 3##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	0.0	1.33378	CTCF.p2:15:0.995	CTCF.p2:67:0.339
chr16	4556550	4556641	reg1012988.p1	4.628	+	AK093388 NM_001127205	-10737	+	NM_001127204 NM_002134 AK313660 TSC_hg19_v1_chr16_+_4526411 BC002396 S34389 AK222629	-30192	+	AF225419 NM_020677	-31700	-	AK311295 BC007604 TSC_hg19_v1_chr16_-_4563123	6456	-	TSC_hg19_v1_chr16_-_4588442 AF195661 AL833853 NM_001199054	31842	-	TSC_hg19_v1_chr16_-_4588775 BC002882 AK292036 AK302297 AL136698 AK294257 DQ167023 NM_001199055 NM_001199056 NM_013399 AK307067 AK308532	32197	-	AK093388|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127205|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127204|HMOX2|3163|heme oxygenase (decycling) 2##NM_002134|HMOX2|3163|heme oxygenase (decycling) 2##AK313660|HMOX2|3163|heme oxygenase (decycling) 2##BC002396|HMOX2|3163|heme oxygenase (decycling) 2##S34389|HMOX2|3163|heme oxygenase (decycling) 2##AK222629|HMOX2|3163|heme oxygenase (decycling) 2##AF225419|NMRAL1|57407|NmrA-like family domain containing 1##NM_020677|NMRAL1|57407|NmrA-like family domain containing 1##AK311295|C16orf5|29965|chromosome 16 open reading frame 5##BC007604|C16orf5|29965|chromosome 16 open reading frame 5##AF195661|C16orf5|29965|chromosome 16 open reading frame 5##AL833853|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199054|C16orf5|29965|chromosome 16 open reading frame 5##BC002882|C16orf5|29965|chromosome 16 open reading frame 5##AK292036|C16orf5|29965|chromosome 16 open reading frame 5##AK302297|C16orf5|29965|chromosome 16 open reading frame 5##AL136698|C16orf5|29965|chromosome 16 open reading frame 5##AK294257|C16orf5|29965|chromosome 16 open reading frame 5##DQ167023|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199055|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199056|C16orf5|29965|chromosome 16 open reading frame 5##NM_013399|C16orf5|29965|chromosome 16 open reading frame 5##AK307067|C16orf5|29965|chromosome 16 open reading frame 5##AK308532|C16orf5|29965|chromosome 16 open reading frame 5	0.0	0.389441	CTCF.p2:-14:0.389
chr2	110401865	110401969	reg1012708.p1	4.628	+	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	-29972	+	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	-30192	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	-30436	-	AL136868 NM_001037866 NM_001123363 NM_032260	148417	+	NM_005054 U64675	150048	+	BC094740 NM_001205288 NM_033514	254091	+	BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AL136868|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001037866|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_001123363|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_032260|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##BC094740|LIMS3-LOC440895|100271835|LIMS3-LOC440895 readthrough##NM_001205288|LIMS3L|100288695|LIM and senescent cell antigen-like domains 3-like##NM_033514|LIMS3|96626|LIM and senescent cell antigen-like domains 3	0.010628	0.0	
chr5	17225064	17225244	reg1001838.p1	4.628	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-7314	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-7542	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-288769	-	AK295087 BC031051 NM_001167667 NM_004934	2763168	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4234455	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4234494	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.0	0.0	
chr1	205562588	205562707	reg1005390.p1	4.627	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	-24434	+	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	-24520	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-88825	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	38259	-	NM_001973 NM_021795	39352	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	86921	-	BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3	0.993766	0.0	
chr12	38722229	38722346	reg1011206.p1	4.627	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-11662	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4546814	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4546901	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	577096	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1114712	-	AK314254 NM_005164	1291555	-	NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2	0.145803	0.85622	CTCF.p2:23:0.856
chr13	110676332	110676436	reg1009687.p1	4.627	+	TSC_hg19_v1_chr13_-_110438921 NM_003749 AF073310	-237476	-	AB290159 AK127806 NM_001198950	-1394815	+	AB020672 BC146791 NM_015011 AL834447	-1427870	+	M10941 X03963 TSC_hg19_v1_chr13_-_110802760	126351	-	TSC_hg19_v1_chr13_-_110959505 BC142626 BC151220 AB209646 NM_001845 X05561	283125	-	TSC_hg19_v1_chr13_+_110959631 AK294920 NM_001846 X05562	283237	+	NM_003749|IRS2|8660|insulin receptor substrate 2##AF073310|IRS2|8660|insulin receptor substrate 2##AB290159|MYO16|23026|myosin XVI##AK127806|MYO16|23026|myosin XVI##NM_001198950|MYO16|23026|myosin XVI##AB020672|MYO16|23026|myosin XVI##BC146791|MYO16|23026|myosin XVI##NM_015011|MYO16|23026|myosin XVI##AL834447|MYO16|23026|myosin XVI##M10941|COL4A1|1282|collagen, type IV, alpha 1##X03963|COL4A1|1282|collagen, type IV, alpha 1##BC142626|COL4A1|1282|collagen, type IV, alpha 1##BC151220|COL4A1|1282|collagen, type IV, alpha 1##AB209646|COL4A1|1282|collagen, type IV, alpha 1##NM_001845|COL4A1|1282|collagen, type IV, alpha 1##X05561|COL4A1|1282|collagen, type IV, alpha 1##AK294920|COL4A2|1284|collagen, type IV, alpha 2##NM_001846|COL4A2|1284|collagen, type IV, alpha 2##X05562|COL4A2|1284|collagen, type IV, alpha 2	2.151944	0.0	denovo_WM_7:30:0.769	denovo_WM_7:45:0.789
chr14	23769155	23769335	reg1001667.p2	4.627	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-13920	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	-13976	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-116373	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	6799	+	NM_004643	20151	+	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	21429	+	NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1	0.99652	0.0	
chr15	45137337	45137474	reg1013534.p2	4.627	+	NM_080745 NM_182985	-108846	+	BC031266 TSC_hg19_v1_chr15_+_45021331	-116074	+	AK311550 TSC_hg19_v1_chr15_+_45021275 DQ232883	-116152	+	BC029537 NM_152448 DQ890983 DQ894158	111503	+	NM_003104 TSC_hg19_v1_chr15_+_45315395 AK312444 U07361 L29008 BC021085 AK295656 AK296574 AK309672 BC025295 AB529056 DQ892769 DQ896016	177985	+	TSC_hg19_v1_chr15_-_45406336 AF230496	268926	-	NM_080745|TRIM69|140691|tripartite motif containing 69##NM_182985|TRIM69|140691|tripartite motif containing 69##BC031266|TRIM69|140691|tripartite motif containing 69##DQ232883|TRIM69|140691|tripartite motif containing 69##BC029537|C15orf43|145645|chromosome 15 open reading frame 43##NM_152448|C15orf43|145645|chromosome 15 open reading frame 43##DQ890983|C15orf43|145645|chromosome 15 open reading frame 43##DQ894158|C15orf43|145645|chromosome 15 open reading frame 43##NM_003104|SORD|6652|sorbitol dehydrogenase##AK312444|SORD|6652|sorbitol dehydrogenase##U07361|SORD|6652|sorbitol dehydrogenase##L29008|SORD|6652|sorbitol dehydrogenase##BC021085|SORD|6652|sorbitol dehydrogenase##AK296574|SORD|6652|sorbitol dehydrogenase##AK309672|SORD|6652|sorbitol dehydrogenase##BC025295|SORD|6652|sorbitol dehydrogenase##DQ892769|SORD|6652|sorbitol dehydrogenase##DQ896016|SORD|6652|sorbitol dehydrogenase##AF230496|DUOX2|50506|dual oxidase 2	0.998198	0.0	denovo_WM_7:60:0.655
chr5	64487455	64487635	reg1009508.p1	4.627	+	BX647971 TSC_hg19_v1_chr5_+_64064766 NM_005869 AK225161 AK225105 AK308223 AK312954 AY358569 AF039692 BC012117	-422761	+	TSC_hg19_v1_chr5_-_64064491 AK094073 AX748442 NM_173829	-423041	-	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	-423099	-	AY692424 NM_197941 AY692422	290179	-	TSC_hg19_v1_chr5_-_64858996 AF315941 BC005400 BC008504 NM_022145	371419	-	TSC_hg19_v1_chr5_+_64859122 AK025679 AK093675 AK300022 AK298175 AK301654 NM_015342 BC015385 AB384434 CU677289 GQ129262 GQ129263 D38552	371573	+	BX647971|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##NM_005869|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225161|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225105|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK308223|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK312954|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AY358569|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AF039692|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##BC012117|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK094073|SREK1IP1|285672|SREK1-interacting protein 1##NM_173829|SREK1IP1|285672|SREK1-interacting protein 1##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1##AY692424|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##NM_197941|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##AY692422|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##AF315941|CENPK|64105|centromere protein K##BC005400|CENPK|64105|centromere protein K##BC008504|CENPK|64105|centromere protein K##NM_022145|CENPK|64105|centromere protein K##AK025679|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK300022|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK298175|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK301654|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##NM_015342|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##BC015385|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129262|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129263|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##D38552|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1	0.974807	0.0	denovo_WM_7:-21:0.881
chr6_mcf_hap5	3533279	3533385	reg1010582.p1	4.627	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.008085	0.0	denovo_WM_7:-25:0.621	denovo_WM_7:-26:0.297
chr1	200854463	200854626	reg1008537.p1	4.626	+	BC126386 BC126388 AK315339 NM_005298	-12421	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-145873	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-215436	-	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	6102	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	9453	+	AM177180 AB527174 BC137281 BC144557 TSC_hg19_v1_chr1_-_200992598	138010	-	BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106##AM177180|KIF21B|23046|kinesin family member 21B##BC137281|KIF21B|23046|kinesin family member 21B##BC144557|KIF21B|23046|kinesin family member 21B	2.649715	0.0	denovo_WM_7:14:0.612	denovo_WM_7:-16:0.204	denovo_WM_7:-31:0.276	denovo_WM_7:31:0.527
chr22	39417435	39417523	reg1000788.p2	4.626	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	-352	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	-7153	+	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	-7228	+	AK294810 NM_001006666 NM_145298	19161	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	55708	+	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	75791	+	NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AK294810|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_001006666|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_145298|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H	0.0	0.0	
chr7	156308977	156309099	reg1011402.p1	4.626	+	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	-704148	-	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	-707240	-	TSC_hg19_v1_chr7_+_155437354 AK307515	-871670	+	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	124193	-	NM_030936 TSC_hg19_v1_chr7_+_156433487 AK314067 NM_001184996 AL136874 BC028120 AK307316	124427	+	NM_001184997 AF325690	126657	+	L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AY927450|SHH|6469|sonic hedgehog##AK307515|RBM33|155435|RNA binding motif protein 33##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13##NM_030936|RNF32|140545|ring finger protein 32##AK314067|RNF32|140545|ring finger protein 32##NM_001184996|RNF32|140545|ring finger protein 32##AL136874|RNF32|140545|ring finger protein 32##BC028120|RNF32|140545|ring finger protein 32##AK307316|RNF32|140545|ring finger protein 32##NM_001184997|RNF32|140545|ring finger protein 32##AF325690|RNF32|140545|ring finger protein 32	0.999262	0.13936	denovo_WM_7:56:0.239	denovo_WM_7:57:0.239	denovo_WM_7:58:0.239	denovo_WM_7:59:0.239
chrX	129326342	129326502	reg1011198.p1	4.626	+	TSC_hg19_v1_chrX_+_129305943 BC001157 BC001704 BC009996 NM_004794 AF498959 BT007038 AK094927	-20573	+	BC111065 TSC_hg19_v1_chrX_-_129299819 NM_001130847 NM_004208 NM_145812 NM_145813	-26591	-	TSC_hg19_v1_chrX_-_129299743 AK000775 AL049703 BC139738	-26700	-	TSC_hg19_v1_chrX_-_129402874 AK000102 AL834333 AL133204 AK290373 BC051728 NM_017666	76424	-	TSC_hg19_v1_chrX_+_129473927 AK304649 AK297499 AK309433 AK296155 NM_003951 NM_022810 BC119666 BC119667 AF155809 AF155810 AF155811 AY358099	147610	+	AY288416 BC101166 BC101167 BC101168 AB529244 HQ258187 BC095502 BC126179 BC126181 NM_178471	193043	-	BC001157|RAB33A|9363|RAB33A, member RAS oncogene family##BC001704|RAB33A|9363|RAB33A, member RAS oncogene family##BC009996|RAB33A|9363|RAB33A, member RAS oncogene family##NM_004794|RAB33A|9363|RAB33A, member RAS oncogene family##AF498959|RAB33A|9363|RAB33A, member RAS oncogene family##BT007038|RAB33A|9363|RAB33A, member RAS oncogene family##AK094927|RAB33A|9363|RAB33A, member RAS oncogene family##BC111065|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_001130847|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_004208|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_145812|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_145813|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AK000775|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AL049703|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##BC139738|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AK000102|ZNF280C|55609|zinc finger protein 280C##AL834333|ZNF280C|55609|zinc finger protein 280C##AL133204|ZNF280C|55609|zinc finger protein 280C##AK290373|ZNF280C|55609|zinc finger protein 280C##BC051728|ZNF280C|55609|zinc finger protein 280C##NM_017666|ZNF280C|55609|zinc finger protein 280C##AK297499|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK309433|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK296155|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_003951|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_022810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119666|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119667|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155809|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155811|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY358099|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY288416|GPR119|139760|G protein-coupled receptor 119##BC101166|GPR119|139760|G protein-coupled receptor 119##BC101167|GPR119|139760|G protein-coupled receptor 119##BC101168|GPR119|139760|G protein-coupled receptor 119##HQ258187|GPR119|139760|G protein-coupled receptor 119##BC095502|GPR119|139760|G protein-coupled receptor 119##BC126179|GPR119|139760|G protein-coupled receptor 119##BC126181|GPR119|139760|G protein-coupled receptor 119##NM_178471|GPR119|139760|G protein-coupled receptor 119	0.0	0.42514	CTCF.p2:7:0.425
chr11	120437285	120437427	reg1011469.p2	4.625	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-54891	+	BC063117 NM_001198665 NM_015313	-229739	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	-230252	+	AB384776 NM_014619 S67803	93671	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	457454	+	NM_005422	536018	+	AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_005422|TECTA|7007|tectorin alpha	1.49088	0.0	denovo_WM_7:42:0.428	denovo_WM_7:67:0.496	denovo_WM_7:68:0.496
chr19	16555400	16555499	reg1001066.p3	4.625	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-119680	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-119808	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-246699	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	27327	-	TSC_hg19_v1_chr19_-_16582810 AK291359	27403	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	51521	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.994896	0.0	denovo_WM_7:96:0.332	denovo_WM_7:97:0.332	denovo_WM_7:98:0.332
chr2	25475577	25475722	reg1012108.p1	4.625	+	TSC_hg19_v1_chr2_-_25475127 AF480163 NM_153759	-443	-	TSC_hg19_v1_chr2_-_25468920 AK025230	-6671	-	TSC_hg19_v1_chr2_-_25467080 BC023612	-8514	-	TSC_hg19_v1_chr2_-_25536762 AB527956 EU446951	61158	-	AF067972 TSC_hg19_v1_chr2_-_25564801 BC043617 NM_022552	89150	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	89679	-	AF480163|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_153759|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##EU446951|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF067972|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC043617|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_022552|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.990795	0.0	denovo_WM_7:0:0.556	denovo_WM_7:-3:0.370
chrX	149085017	149085164	reg1010953.p1	4.625	+	AK313943 NM_001166400 NM_001166401 NM_005364 BC002455 BC012744	-75120	+	AK292272 AK313321 NM_001080790 BC002351 NM_005365	-221495	+	NM_001164415 NM_016153	-229365	+	L43575 TSC_hg19_v1_chrX_-_149106661 U66042 NM_001013845	21592	-	TSC_hg19_v1_chrX_+_149529838 AK302612	444743	+	TSC_hg19_v1_chrX_+_149531583 NM_001177465 AK294478	446472	+	AK313943|MAGEA8|4107|melanoma antigen family A, 8##NM_001166400|MAGEA8|4107|melanoma antigen family A, 8##NM_001166401|MAGEA8|4107|melanoma antigen family A, 8##NM_005364|MAGEA8|4107|melanoma antigen family A, 8##BC002455|MAGEA8|4107|melanoma antigen family A, 8##BC012744|MAGEA8|4107|melanoma antigen family A, 8##AK292272|MAGEA9|4108|melanoma antigen family A, 9##AK313321|MAGEA9|4108|melanoma antigen family A, 9##NM_001080790|MAGEA9B|728269|melanoma antigen family A, 9B##BC002351|MAGEA9|4108|melanoma antigen family A, 9##NM_005365|MAGEA9|4108|melanoma antigen family A, 9##NM_001164415|HSFX2|100130086|heat shock transcription factor family, X linked 2##NM_016153|HSFX1|100506164|heat shock transcription factor family, X linked 1##L43575|CXorf40B|541578|chromosome X open reading frame 40B##U66042|CXorf40B|541578|chromosome X open reading frame 40B##NM_001013845|CXorf40B|541578|chromosome X open reading frame 40B##AK302612|MAMLD1|10046|mastermind-like domain containing 1##NM_001177465|MAMLD1|10046|mastermind-like domain containing 1##AK294478|MAMLD1|10046|mastermind-like domain containing 1	0.0	0.286914	CTCF.p2:85:0.287
chr10	121468460	121468567	reg1005911.p2	4.624	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-57377	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-57438	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-57460	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	17025	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	17101	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	17192	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.967726	0.0	denovo_WM_7:44:0.309
chr10	50399543	50399694	reg1003578.p4	4.624	+	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	-3192	-	BC029839 BC047597 NM_001164484	-57560	-	TSC_hg19_v1_chr10_-_50323537 BC041414 AK297931 AK056299 NM_001031746 NM_144984	-76095	-	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	107593	+	NM_001080520	200288	-	BC028954 AK074682 BC063690 NM_170753	332632	-	DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##BC041414|VSTM4|196740|V-set and transmembrane domain containing 4##AK297931|VSTM4|196740|V-set and transmembrane domain containing 4##AK056299|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001031746|VSTM4|196740|V-set and transmembrane domain containing 4##NM_144984|VSTM4|196740|V-set and transmembrane domain containing 4##AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##NM_001080520|DRGX|644168|dorsal root ganglia homeobox##BC028954|PGBD3|267004|piggyBac transposable element derived 3##AK074682|PGBD3|267004|piggyBac transposable element derived 3##BC063690|PGBD3|267004|piggyBac transposable element derived 3##NM_170753|PGBD3|267004|piggyBac transposable element derived 3	0.0	0.0	
chr11	95290012	95290144	reg1010164.p1	4.624	+	BC017296 AK096300 NM_144665 TSC_hg19_v1_chr11_-_94964367	-325774	-	TSC_hg19_v1_chr11_+_94823009 AK291673 NM_015036 BC026191 AB020637 BC071171 AB385387	-467066	+	TSC_hg19_v1_chr11_+_94800406 AF031166	-489670	+	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	232573	-	TSC_hg19_v1_chr11_-_95522744 AK313727 BC028727	232655	-	AK021591 TSC_hg19_v1_chr11_-_95522975 BC026013 NM_144664	232888	-	BC017296|SESN3|143686|sestrin 3##AK096300|SESN3|143686|sestrin 3##NM_144665|SESN3|143686|sestrin 3##AK291673|ENDOD1|23052|endonuclease domain containing 1##NM_015036|ENDOD1|23052|endonuclease domain containing 1##BC026191|ENDOD1|23052|endonuclease domain containing 1##AB020637|ENDOD1|23052|endonuclease domain containing 1##BC071171|ENDOD1|23052|endonuclease domain containing 1##AF031166|SRSF8|10929|serine/arginine-rich splicing factor 8##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B##AK313727|FAM76B|143684|family with sequence similarity 76, member B##BC028727|FAM76B|143684|family with sequence similarity 76, member B##AK021591|FAM76B|143684|family with sequence similarity 76, member B##BC026013|FAM76B|143684|family with sequence similarity 76, member B##NM_144664|FAM76B|143684|family with sequence similarity 76, member B	0.020319	0.0	
chr16	18777206	18777311	reg1013155.p2	4.624	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	-203867	-	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-1212453	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-2450728	+	TSC_hg19_v1_chr16_-_18798077 AK127316	20838	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	24397	-	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	35524	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1	0.716902	0.0	denovo_WM_7:-1:0.703
chr17	19276610	19276719	reg1013049.p2	4.624	+	CU678304 TSC_hg19_v1_chr17_-_19265911 BC002944 AK293815 AB030506 AK297782 NM_001243473 NM_015681	-10695	-	TSC_hg19_v1_chr17_+_19140720 NM_001102664 NM_014964 NM_148921 AK092366 AK024115 AB028988 BC070036 AK295652 AK298006 AK307455 BC015488	-135956	+	BC157869 NM_001129778	-245883	+	TSC_hg19_v1_chr17_+_19281077 NM_139032 NM_139033 BC007404 BC007992 U29725 AK295376	4526	+	AK309320 NM_001243475	4830	-	TSC_hg19_v1_chr17_+_19281800 NM_002749 NM_139034 U29726 BC030134 AB209611 BC009963 U25278	5159	+	BC002944|B9D1|27077|B9 protein domain 1##AK293815|B9D1|27077|B9 protein domain 1##AB030506|B9D1|27077|B9 protein domain 1##AK297782|B9D1|27077|B9 protein domain 1##NM_001243473|B9D1|27077|B9 protein domain 1##NM_015681|B9D1|27077|B9 protein domain 1##NM_001102664|EPN2|22905|epsin 2##NM_014964|EPN2|22905|epsin 2##NM_148921|EPN2|22905|epsin 2##AK092366|EPN2|22905|epsin 2##AK024115|EPN2|22905|epsin 2##AB028988|EPN2|22905|epsin 2##BC070036|EPN2|22905|epsin 2##AK295652|EPN2|22905|epsin 2##AK298006|EPN2|22905|epsin 2##AK307455|EPN2|22905|epsin 2##BC015488|EPN2|22905|epsin 2##BC157869|GRAPL|400581|GRB2-related adaptor protein-like##NM_001129778|GRAPL|400581|GRB2-related adaptor protein-like##NM_139032|MAPK7|5598|mitogen-activated protein kinase 7##NM_139033|MAPK7|5598|mitogen-activated protein kinase 7##BC007404|MAPK7|5598|mitogen-activated protein kinase 7##BC007992|MAPK7|5598|mitogen-activated protein kinase 7##U29725|MAPK7|5598|mitogen-activated protein kinase 7##AK295376|MAPK7|5598|mitogen-activated protein kinase 7##AK309320|B9D1|27077|B9 protein domain 1##NM_001243475|B9D1|27077|B9 protein domain 1##NM_002749|MAPK7|5598|mitogen-activated protein kinase 7##NM_139034|MAPK7|5598|mitogen-activated protein kinase 7##U29726|MAPK7|5598|mitogen-activated protein kinase 7##BC030134|MAPK7|5598|mitogen-activated protein kinase 7##AB209611|MAPK7|5598|mitogen-activated protein kinase 7##BC009963|MAPK7|5598|mitogen-activated protein kinase 7##U25278|MAPK7|5598|mitogen-activated protein kinase 7	0.978769	0.0	denovo_WM_7:47:0.238	denovo_WM_7:50:0.338
chr17	35767632	35767799	reg1012087.p2	4.624	+	AK022767 NM_001488 NM_133439	-404	+	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	-753	+	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	-840	-	NM_007026 TSC_hg19_v1_chr17_+_35849956	82245	+	TSC_hg19_v1_chr17_+_35849996 AK314894	82274	+	TSC_hg19_v1_chr17_+_35849998 BC001894 AF038844 BC000370 BC004448	82300	+	AK022767|TADA2A|6871|transcriptional adaptor 2A##NM_001488|TADA2A|6871|transcriptional adaptor 2A##NM_133439|TADA2A|6871|transcriptional adaptor 2A##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_007026|DUSP14|11072|dual specificity phosphatase 14##AK314894|DUSP14|11072|dual specificity phosphatase 14##BC001894|DUSP14|11072|dual specificity phosphatase 14##AF038844|DUSP14|11072|dual specificity phosphatase 14##BC000370|DUSP14|11072|dual specificity phosphatase 14##BC004448|DUSP14|11072|dual specificity phosphatase 14	0.998808	0.0	denovo_WM_7:10:0.304	denovo_WM_7:11:0.426
chr19	13085300	13085437	reg1012419.p1	4.624	+	AK095926 NM_152654 BC101800 BC113476 AB070695 HQ258091	-4916	+	TSC_hg19_v1_chr19_-_13068038 AF479749 NM_052850	-17323	-	AJ295986 BC004944 BC013027 BC013039 AF412816 AF475095 AJ429498 CU686712 BC069200 TSC_hg19_v1_chr19_-_13068030	-17349	-	TSC_hg19_v1_chr19_+_13106288 BC052801 NM_002501 AB385580 BT019732	21034	+	TSC_hg19_v1_chr19_+_13134807 AK297261 U18759	49436	+	TSC_hg19_v1_chr19_+_13135426 BX537794 AK295290	50029	+	AK095926|DAND5|199699|DAN domain family, member 5##NM_152654|DAND5|199699|DAN domain family, member 5##BC101800|DAND5|199699|DAN domain family, member 5##BC113476|DAND5|199699|DAN domain family, member 5##AB070695|DAND5|199699|DAN domain family, member 5##HQ258091|DAND5|199699|DAN domain family, member 5##AF479749|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##NM_052850|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AJ295986|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC004944|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC013027|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC013039|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AF412816|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AF475095|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##AJ429498|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##BC069200|GADD45GIP1|90480|growth arrest and DNA-damage-inducible, gamma interacting protein 1##NM_002501|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BT019732|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK297261|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##U18759|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BX537794|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK295290|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)	0.990922	0.0	denovo_WM_7:-20:0.595
chr4	169711185	169711358	reg1011540.p2	4.624	+	TSC_hg19_v1_chr4_+_169552755 NM_001166109 AK095512	-158475	+	TSC_hg19_v1_chr4_+_169418204 AF464873 NM_001166108 NM_016081 BC140850 BC144666	-293051	+	TSC_hg19_v1_chr4_-_169401630 CR933601 NM_001012967	-309651	-	TSC_hg19_v1_chr4_+_169753245 NM_001166110 AB023209	41906	+	BC021973 BC033650 TSC_hg19_v1_chr4_-_169931407 AK027337 AK291756 AK299847 AL833393 NM_032783	220187	-	BC041023 TSC_hg19_v1_chr4_-_170077830	366548	-	NM_001166109|PALLD|23022|palladin, cytoskeletal associated protein##AK095512|PALLD|23022|palladin, cytoskeletal associated protein##AF464873|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166108|PALLD|23022|palladin, cytoskeletal associated protein##NM_016081|PALLD|23022|palladin, cytoskeletal associated protein##BC140850|PALLD|23022|palladin, cytoskeletal associated protein##BC144666|PALLD|23022|palladin, cytoskeletal associated protein##CR933601|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001012967|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001166110|PALLD|23022|palladin, cytoskeletal associated protein##AB023209|PALLD|23022|palladin, cytoskeletal associated protein##BC021973|CBR4|84869|carbonyl reductase 4##BC033650|CBR4|84869|carbonyl reductase 4##AK027337|CBR4|84869|carbonyl reductase 4##AK291756|CBR4|84869|carbonyl reductase 4##AL833393|CBR4|84869|carbonyl reductase 4##NM_032783|CBR4|84869|carbonyl reductase 4##BC041023|SH3RF1|57630|SH3 domain containing ring finger 1	0.986447	0.0	denovo_WM_7:46:0.228	denovo_WM_7:47:0.228	denovo_WM_7:48:0.228	denovo_WM_7:49:0.228
chr5	55232257	55232380	reg1000234.p2	4.624	+	NM_001242636 NM_001242639	-83169	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-85049	+	NM_001166534 AK093439 AX748127	-169593	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	58445	-	AK123389 NM_024669	296867	-	NM_005921	878581	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.0	
chr5	76791171	76791304	reg1008980.p2	4.624	+	TSC_hg19_v1_chr5_-_76788333 AK001766 BC001807 NM_018268	-2922	-	AK296423 AK300058 TSC_hg19_v1_chr5_-_76788142 AK021855	-3092	-	TSC_hg19_v1_chr5_-_76788048 AK293316 AK295249 CU691838 AK304329 AK023977 AF115511 BC040241	-3171	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	143192	-	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	143277	-	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	280895	-	AK001766|WDR41|55255|WD repeat domain 41##BC001807|WDR41|55255|WD repeat domain 41##NM_018268|WDR41|55255|WD repeat domain 41##AK296423|WDR41|55255|WD repeat domain 41##AK300058|WDR41|55255|WD repeat domain 41##AK021855|WDR41|55255|WD repeat domain 41##AK293316|WDR41|55255|WD repeat domain 41##AK295249|WDR41|55255|WD repeat domain 41##AK304329|WDR41|55255|WD repeat domain 41##AK023977|WDR41|55255|WD repeat domain 41##AF115511|WDR41|55255|WD repeat domain 41##BC040241|WDR41|55255|WD repeat domain 41##EU446696|OTP|23440|orthopedia homeobox##BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A	0.508531	0.0	denovo_WM_7:-11:0.255	denovo_WM_7:-13:0.253
chr8	125984667	125984822	reg1013774.p2	4.624	+	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	-244021	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	-244299	-	TSC_hg19_v1_chr8_-_125716430 U50573	-268312	-	NM_152412 BX537876 AK095321 BC130515 BC130517	804	+	NM_003129 TSC_hg19_v1_chr8_+_126010746 AK301792 BX647605	25989	+	TSC_hg19_v1_chr8_+_126010748 BX647400	26032	+	AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##U50573|MTSS1|9788|metastasis suppressor 1##NM_152412|ZNF572|137209|zinc finger protein 572##BX537876|ZNF572|137209|zinc finger protein 572##AK095321|ZNF572|137209|zinc finger protein 572##BC130515|ZNF572|137209|zinc finger protein 572##BC130517|ZNF572|137209|zinc finger protein 572##NM_003129|SQLE|6713|squalene epoxidase##AK301792|SQLE|6713|squalene epoxidase##BX647605|SQLE|6713|squalene epoxidase##BX647400|SQLE|6713|squalene epoxidase	0.998802	0.0	
chr16	88748234	88748414	reg1001896.p1	4.623	+	TSC_hg19_v1_chr16_+_88729781 BC015583 BC050404	-18529	+	TSC_hg19_v1_chr16_+_88729753 BX640980	-18573	+	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	-18807	-	BC041461 AB464228 TSC_hg19_v1_chr16_-_88752874	4507	-	TSC_hg19_v1_chr16_-_88752882 BC107058 NM_178310	4567	-	AK057106 NM_001171816	21700	-	BC015583|MGC23284|197187|uncharacterized LOC197187##BC050404|MGC23284|197187|uncharacterized LOC197187##BX640980|MGC23284|197187|uncharacterized LOC197187##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##BC041461|SNAI3|333929|snail homolog 3 (Drosophila)##BC107058|SNAI3|333929|snail homolog 3 (Drosophila)##NM_178310|SNAI3|333929|snail homolog 3 (Drosophila)##AK057106|RNF166|115992|ring finger protein 166##NM_001171816|RNF166|115992|ring finger protein 166	0.0	0.0	
chr1	89334281	89334417	reg1013172.p1	4.623	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	-184254	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-1536934	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-1537024	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	22862	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	22924	-	TSC_hg19_v1_chr1_-_89458288 AL833593 BC012942 CR627392 AK301326 AK315917 AK057176 AY028624	124010	-	NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##BC065818|LMO4|8543|LIM domain only 4##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB##AL833593|CCBL2|56267|cysteine conjugate-beta lyase 2##BC012942|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##CR627392|CCBL2|56267|cysteine conjugate-beta lyase 2##AK301326|CCBL2|56267|cysteine conjugate-beta lyase 2##AK315917|CCBL2|56267|cysteine conjugate-beta lyase 2##AK057176|CCBL2|56267|cysteine conjugate-beta lyase 2##AY028624|CCBL2|56267|cysteine conjugate-beta lyase 2	0.986644	0.0	denovo_WM_7:80:0.921
chr19	2070482	2070662	reg1012750.p1	4.623	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-19339	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-24331	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-28522	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	14671	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	25693	-	TSC_hg19_v1_chr19_-_2096297 AL832474	25722	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	0.989901	0.0	
chr5	125878306	125878447	reg1012048.p1	4.623	+	NM_001146322 AK303857	-77560	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	-119189	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	-119533	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	52480	-	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	58256	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	89039	+	NM_001146322|GRAMD3|65983|GRAM domain containing 3##AK303857|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48	0.0	0.0	
chr8	28741618	28741753	reg1011178.p2	4.623	+	TSC_hg19_v1_chr8_+_28559149 AF001690 AB007042 AF083551 NM_001440	-182535	+	TSC_hg19_v1_chr8_+_28559032 AB011091	-182610	+	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	-389920	+	TSC_hg19_v1_chr8_-_28747454 BC016687 AK225072 AK304525 AK298468 NM_001172562 BC025267 AK300593 AK295977 AK001733 AK225530	5775	-	NM_001145159 NM_018250	6012	-	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	6232	+	AF001690|EXTL3|2137|exostoses (multiple)-like 3##AB007042|EXTL3|2137|exostoses (multiple)-like 3##AF083551|EXTL3|2137|exostoses (multiple)-like 3##NM_001440|EXTL3|2137|exostoses (multiple)-like 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##BC016687|INTS9|55756|integrator complex subunit 9##AK225072|INTS9|55756|integrator complex subunit 9##AK304525|INTS9|55756|integrator complex subunit 9##AK298468|INTS9|55756|integrator complex subunit 9##NM_001172562|INTS9|55756|integrator complex subunit 9##BC025267|INTS9|55756|integrator complex subunit 9##AK300593|INTS9|55756|integrator complex subunit 9##AK295977|INTS9|55756|integrator complex subunit 9##AK001733|INTS9|55756|integrator complex subunit 9##AK225530|INTS9|55756|integrator complex subunit 9##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1	1.994021	0.0	denovo_WM_7:6:0.250	denovo_WM_7:7:0.675	denovo_WM_7:22:0.823
chr1	109969772	109969952	reg1010837.p2	4.622	+	AK225990 TSC_hg19_v1_chr1_-_109969071 AK304448 AK313351 NM_001199772 NM_002790 NM_001199773 NM_001199774	-780	-	BC103751 TSC_hg19_v1_chr1_-_109969048	-813	-	BT019717 CR456847 AB528717 X61970 BC102018 BC102019 BC102020 TSC_hg19_v1_chr1_-_109969040	-866	-	AK131459 NM_001040709 AK289513 AK302566 TSC_hg19_v1_chr1_+_110009189	39283	+	TSC_hg19_v1_chr1_+_110009222 AK293082	39359	+	TSC_hg19_v1_chr1_+_110026580 BC036849 NM_153340	56684	+	AK225990|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK304448|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK313351|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199772|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_002790|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199773|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##NM_001199774|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC103751|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BT019717|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##CR456847|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##X61970|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102018|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102019|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##BC102020|PSMA5|5686|proteasome (prosome, macropain) subunit, alpha type, 5##AK131459|SYPL2|284612|synaptophysin-like 2##NM_001040709|SYPL2|284612|synaptophysin-like 2##AK289513|SYPL2|284612|synaptophysin-like 2##AK302566|SYPL2|284612|synaptophysin-like 2##AK293082|SYPL2|284612|synaptophysin-like 2##BC036849|ATXN7L2|127002|ataxin 7-like 2##NM_153340|ATXN7L2|127002|ataxin 7-like 2	0.990008	0.0	
chr12	49845844	49845979	reg1012084.p2	4.622	+	TSC_hg19_v1_chr12_+_49761253 BC017767 AL833614 BC048299 AK292334 AK023202 BX648916 BC032441	-84517	+	TSC_hg19_v1_chr12_+_49760679 AK095582 NM_023071	-85222	+	BC033236 NM_024902	-104871	+	TSC_hg19_v1_chr12_+_49932842 AB033108 NM_012284 BC144254 BC150602 AB022696 AB384589	87109	+	AY336730 NM_001012300	114310	-	TSC_hg19_v1_chr12_-_49961916 AK123187 BC011794 NM_006337 BX538079 AK308581	116007	-	BC017767|SPATS2|65244|spermatogenesis associated, serine-rich 2##AL833614|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC048299|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK292334|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK023202|SPATS2|65244|spermatogenesis associated, serine-rich 2##BX648916|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC032441|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK095582|SPATS2|65244|spermatogenesis associated, serine-rich 2##NM_023071|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC033236|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##NM_024902|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##AB033108|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##NM_012284|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##BC144254|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##BC150602|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##AB022696|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##AY336730|MCRS1|10445|microspherule protein 1##NM_001012300|MCRS1|10445|microspherule protein 1##BC011794|MCRS1|10445|microspherule protein 1##NM_006337|MCRS1|10445|microspherule protein 1##BX538079|MCRS1|10445|microspherule protein 1	0.0	0.0	
chr1	35373248	35373369	reg1013332.p1	4.622	+	NM_001080418 AB527430	-2324	-	BC141907 TSC_hg19_v1_chr1_+_35331580	-41751	+	BX648912 BC107421 NM_001164825 TSC_hg19_v1_chr1_-_35325339 BC011880 BC073851 AK074853 BC064320 NM_138428	-47933	-	TSC_hg19_v1_chr1_-_35450919 CU688652 BC042172 BC029439	77602	-	TSC_hg19_v1_chr1_-_35450927 AK129824	77617	-	TSC_hg19_v1_chr1_-_35450928 NM_001195156	77631	-	NM_001080418|DLGAP3|58512|discs, large (Drosophila) homolog-associated protein 3##BX648912|C1orf212|113444|chromosome 1 open reading frame 212##BC107421|C1orf212|113444|chromosome 1 open reading frame 212##NM_001164825|C1orf212|113444|chromosome 1 open reading frame 212##BC011880|C1orf212|113444|chromosome 1 open reading frame 212##BC073851|C1orf212|113444|chromosome 1 open reading frame 212##AK074853|C1orf212|113444|chromosome 1 open reading frame 212##BC064320|C1orf212|113444|chromosome 1 open reading frame 212##NM_138428|C1orf212|113444|chromosome 1 open reading frame 212##BC029439|ZMYM6NB|100506144|ZMYM6 neighbor##AK129824|ZMYM6NB|100506144|ZMYM6 neighbor##NM_001195156|ZMYM6NB|100506144|ZMYM6 neighbor	0.979256	0.0	denovo_WM_7:3:0.255	denovo_WM_7:4:0.252	denovo_WM_7:5:0.472
chr15	52374347	52374426	reg1000914.p1	4.621	+	TSC_hg19_v1_chr15_+_52311442 BC035492	-62925	+	TSC_hg19_v1_chr15_+_52311432 CR749401	-62952	+	TSC_hg19_v1_chr15_+_52311425 NM_002748	-62967	+	AF285092 AB587584 TSC_hg19_v1_chr15_-_52404936 BC093826 BC093828 BC143227 BC104442 BC104443 AF326964 NM_020396	30560	-	AB528747 AF501885 AM393025 TSC_hg19_v1_chr15_-_52472123 AL117471 BC011671 AK314775 BC013997 AF017656 NM_006578 AK290330	97755	-	TSC_hg19_v1_chr15_+_52472257 AF007131	97949	+	BC035492|MAPK6|5597|mitogen-activated protein kinase 6##CR749401|MAPK6|5597|mitogen-activated protein kinase 6##NM_002748|MAPK6|5597|mitogen-activated protein kinase 6##AF285092|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093826|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC093828|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104442|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##BC104443|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF326964|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##NM_020396|BCL2L10|10017|BCL2-like 10 (apoptosis facilitator)##AF501885|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AM393025|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AL117471|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC011671|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK314775|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##BC013997|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF017656|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##NM_006578|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AK290330|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AF007131|LOC100129973|100129973|uncharacterized LOC100129973	1.029037	0.0	
chr17	3767132	3767223	reg1010474.p1	4.621	+	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	-17667	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	-62666	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	-62724	-	AF425301 NM_172206	26859	-	BC031647 TSC_hg19_v1_chr17_-_3796278 AF425232 BC043487	29114	-	AL136576 NM_032294 NM_172207 TSC_hg19_v1_chr17_-_3796348	29166	-	NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AF425301|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172206|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC031647|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AF425232|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##BC043487|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##AL136576|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_032294|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha##NM_172207|CAMKK1|84254|calcium/calmodulin-dependent protein kinase kinase 1, alpha	0.991976	0.942147	CTCF.p2:-11:0.942	denovo_WM_7:77:0.760
chr18	74695402	74695487	reg1009562.p2	4.621	+	BC130034 TSC_hg19_v1_chr18_-_74692098	-3414	-	AF085243 AF085244 NM_007345	-159329	+	TSC_hg19_v1_chr18_+_74534512 BX648028	-160934	+	AK074315 TSC_hg19_v1_chr18_-_74728814	33312	-	CR536534 CR541919 TSC_hg19_v1_chr18_-_74729012 AK296492 M30515 M30516 BC008749 BC101771 BC101773 BC143348 BC143350 M30047 BC080654 M13577 AK289893 AK098402 AK128788 CR627018 AK128770 BC068550	33551	-	TSC_hg19_v1_chr18_-_74729052 AK314553 NM_001025081 NM_001025090 NM_001025092 NM_002385 AK293922	33623	-	BC130034|MBP|4155|myelin basic protein##AF085243|ZNF236|7776|zinc finger protein 236##AF085244|ZNF236|7776|zinc finger protein 236##NM_007345|ZNF236|7776|zinc finger protein 236##BX648028|ZNF236|7776|zinc finger protein 236##AK074315|MBP|4155|myelin basic protein##CR536534|MBP|4155|myelin basic protein##CR541919|MBP|4155|myelin basic protein##M30515|MBP|4155|myelin basic protein##M30516|MBP|4155|myelin basic protein##BC008749|MBP|4155|myelin basic protein##BC101771|MBP|4155|myelin basic protein##BC101773|MBP|4155|myelin basic protein##BC143348|MBP|4155|myelin basic protein##BC143350|MBP|4155|myelin basic protein##M30047|MBP|4155|myelin basic protein##BC080654|MBP|4155|myelin basic protein##M13577|MBP|4155|myelin basic protein##AK289893|MBP|4155|myelin basic protein##AK098402|MBP|4155|myelin basic protein##AK128788|MBP|4155|myelin basic protein##CR627018|MBP|4155|myelin basic protein##AK128770|MBP|4155|myelin basic protein##BC068550|MBP|4155|myelin basic protein##AK314553|MBP|4155|myelin basic protein##NM_001025081|MBP|4155|myelin basic protein##NM_001025090|MBP|4155|myelin basic protein##NM_001025092|MBP|4155|myelin basic protein##NM_002385|MBP|4155|myelin basic protein##AK293922|MBP|4155|myelin basic protein	0.0	0.99287	CTCF.p2:-9:0.993
chr2	13898626	13898771	reg1013174.p2	4.620	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-1040301	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-1040782	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-1041445	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	874123	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	874153	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	1802731	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	0.0	0.0	
chr4	186271977	186272143	reg1013884.p1	4.620	+	NM_031953	-140777	+	TSC_hg19_v1_chr4_-_186125137 AK091993 BC020772 BC030535 NM_020827	-146916	-	NM_001151 TSC_hg19_v1_chr4_+_186064419 J02966 AK291902 BC063643 BC008664 AB209764 BC061589 J03593 DQ891547 DQ894735 AB464231	-207590	+	AB037746 BC152444 NM_018409 AL161975	28101	-	TSC_hg19_v1_chr4_+_186317840 AY296056 NM_181726	45779	+	TSC_hg19_v1_chr4_+_186317892 BC088376	45835	+	NM_031953|SNX25|83891|sorting nexin 25##AK091993|KIAA1430|57587|KIAA1430##BC020772|KIAA1430|57587|KIAA1430##BC030535|KIAA1430|57587|KIAA1430##NM_020827|KIAA1430|57587|KIAA1430##NM_001151|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J02966|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK291902|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC063643|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC008664|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB209764|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC061589|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J03593|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ891547|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ894735|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB037746|LRP2BP|55805|LRP2 binding protein##BC152444|LRP2BP|55805|LRP2 binding protein##NM_018409|LRP2BP|55805|LRP2 binding protein##AL161975|LRP2BP|55805|LRP2 binding protein##AY296056|ANKRD37|353322|ankyrin repeat domain 37##NM_181726|ANKRD37|353322|ankyrin repeat domain 37##BC088376|ANKRD37|353322|ankyrin repeat domain 37	0.971773	0.131742	denovo_WM_7:-36:0.515
chr6	99931857	99932019	reg1002255.p1	4.620	+	BC019074 AJ420570 BC064640 TSC_hg19_v1_chr6_-_99873180 BC042850 BX648520 BC007791 AF314186 BC052638 BC064413 AK027759 BC012780 BC107700 AK027898 AK027658 AK074628 NM_015491 NM_032870	-58771	-	TSC_hg19_v1_chr6_+_99872794 BC029846 BC047485 AK025621	-59124	+	AF314185 TSC_hg19_v1_chr6_-_99849313 AL080186	-82647	-	TSC_hg19_v1_chr6_-_99963261 NM_001080481 AK310643	31331	-	TSC_hg19_v1_chr6_-_99963309 BC005991	31372	-	TSC_hg19_v1_chr6_+_99968921 BX647075 NM_001195131	36961	+	BC019074|PNISR|25957|PNN-interacting serine/arginine-rich protein##AJ420570|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064640|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC042850|PNISR|25957|PNN-interacting serine/arginine-rich protein##BX648520|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC007791|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314186|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC052638|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC064413|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027759|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC012780|PNISR|25957|PNN-interacting serine/arginine-rich protein##BC107700|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027898|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK027658|PNISR|25957|PNN-interacting serine/arginine-rich protein##AK074628|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_015491|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_032870|PNISR|25957|PNN-interacting serine/arginine-rich protein##AF314185|PNISR|25957|PNN-interacting serine/arginine-rich protein##AL080186|PNISR|25957|PNN-interacting serine/arginine-rich protein##NM_001080481|USP45|85015|ubiquitin specific peptidase 45##AK310643|USP45|85015|ubiquitin specific peptidase 45##BC005991|USP45|85015|ubiquitin specific peptidase 45##BX647075|LOC100130890|100130890|uncharacterized LOC100130890##NM_001195131|LOC100130890|100130890|uncharacterized LOC100130890	0.998192	0.0	
chr6_cox_hap2	3705764	3705905	reg1014388.p1	4.620	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.991459	0.0	denovo_WM_7:-21:0.458	denovo_WM_7:-22:0.534
chr14	103039744	103039846	reg1012019.p1	4.619	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-63681	-	AK291868 TSC_hg19_v1_chr14_-_102976070	-63762	-	TSC_hg19_v1_chr14_+_102829428 BC030791 AK296395 AK299690 BC142667 BC142715 AK127721	-210370	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	19203	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	19366	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	204024	+	BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##AK291868|ANKRD9|122416|ankyrin repeat domain 9##BC030791|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK296395|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK299690|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142667|TECPR2|9895|tectonin beta-propeller repeat containing 2##BC142715|TECPR2|9895|tectonin beta-propeller repeat containing 2##AK127721|TECPR2|9895|tectonin beta-propeller repeat containing 2##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##AF155595|RCOR1|23186|REST corepressor 1##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3	0.988225	0.0	denovo_WM_7:20:0.720
chr7	99657120	99657220	reg1012065.p2	4.619	+	NM_145914 TSC_hg19_v1_chr7_+_99647416 CR749301 BC047309 AK301871	-9740	+	AK075324 TSC_hg19_v1_chr7_+_99647394 AK292267 AK313884	-9772	+	TSC_hg19_v1_chr7_+_99627917 U09848	-29232	+	TSC_hg19_v1_chr7_-_99679347 BC011887 BC025265 BC013603 AK297625 AF193057 AF217988 AK315479 AK091984 AX747291 NM_017715 NM_032924	22157	-	BC041695 TSC_hg19_v1_chr7_-_99680201	23017	-	AK309719 TSC_hg19_v1_chr7_-_99680369	23198	-	NM_145914|ZSCAN21|7589|zinc finger and SCAN domain containing 21##CR749301|ZSCAN21|7589|zinc finger and SCAN domain containing 21##BC047309|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK301871|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK075324|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK292267|ZSCAN21|7589|zinc finger and SCAN domain containing 21##AK313884|ZSCAN21|7589|zinc finger and SCAN domain containing 21##U09848|ZKSCAN1|7586|zinc finger with KRAB and SCAN domains 1##BC011887|ZNF3|7551|zinc finger protein 3##BC025265|ZNF3|7551|zinc finger protein 3##BC013603|ZNF3|7551|zinc finger protein 3##AK297625|ZNF3|7551|zinc finger protein 3##AF193057|ZNF3|7551|zinc finger protein 3##AF217988|ZNF3|7551|zinc finger protein 3##AK315479|ZNF3|7551|zinc finger protein 3##AK091984|ZNF3|7551|zinc finger protein 3##NM_017715|ZNF3|7551|zinc finger protein 3##NM_032924|ZNF3|7551|zinc finger protein 3##AK309719|ZNF3|7551|zinc finger protein 3	0.993773	0.0	
chr1	24152352	24152442	reg1011985.p2	4.618	+	TSC_hg19_v1_chr1_-_24151934 NM_000191 NM_001166059	-449	-	TSC_hg19_v1_chr1_-_24151929 BC021145 BT009792 CR456884 CU679747 DQ892083 DQ895276 L07033 BC010570 AK309129 AK300733 AK313869	-510	-	TSC_hg19_v1_chr1_-_24127245 BC056880 BC001273 BC050685 AK096127 AK307354 AK057302 NM_001008216	-25155	-	CU675950 TSC_hg19_v1_chr1_-_24194781 M29877 AB074175 AK092914 AK095443 AK095455 AK225468 AK301302 AK310143 AK314649 AX747804 BC017338 AK295535 NM_000147	42412	-	BC069722 NM_001841 X74328 FJ357036	87407	-	NM_017761 TSC_hg19_v1_chr1_+_24286310	133908	+	NM_000191|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_001166059|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC021145|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BT009792|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##CR456884|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ892083|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ895276|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##L07033|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC010570|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK309129|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK300733|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK313869|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC056880|GALE|2582|UDP-galactose-4-epimerase##BC001273|GALE|2582|UDP-galactose-4-epimerase##BC050685|GALE|2582|UDP-galactose-4-epimerase##AK096127|GALE|2582|UDP-galactose-4-epimerase##AK307354|GALE|2582|UDP-galactose-4-epimerase##AK057302|GALE|2582|UDP-galactose-4-epimerase##NM_001008216|GALE|2582|UDP-galactose-4-epimerase##M29877|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AB074175|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK092914|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095443|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095455|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK225468|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK301302|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK310143|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK314649|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC017338|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK295535|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000147|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC069722|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_001841|CNR2|1269|cannabinoid receptor 2 (macrophage)##X74328|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_017761|PNRC2|55629|proline-rich nuclear receptor coactivator 2	0.012551	0.0	
chr3	33475481	33475629	reg1010145.p1	4.618	+	TSC_hg19_v1_chr3_+_33318965 AK001271 NM_012157 AK302218 NM_001171713 AK303764 AK299665 AK294209 AF174589 AK316229 AK001438 AK298967 AK297534 AF186273 BC031556	-156605	+	AB011099 NM_015551	-214849	-	TSC_hg19_v1_chr3_+_33155562 AJ006470 CU679079 DQ893221 DQ896550	-319982	+	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	5981	-	TSC_hg19_v1_chr3_-_33481868 BC047235 NM_001128160 NM_014517	6310	-	TSC_hg19_v1_chr3_-_33481898 AK293100 NM_001128161	6345	-	AK001271|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_012157|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK302218|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_001171713|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK303764|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK299665|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK294209|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF174589|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK316229|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK001438|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK298967|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK297534|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF186273|FBXL2|25827|F-box and leucine-rich repeat protein 2##BC031556|FBXL2|25827|F-box and leucine-rich repeat protein 2##AB011099|SUSD5|26032|sushi domain containing 5##NM_015551|SUSD5|26032|sushi domain containing 5##AJ006470|CRTAP|10491|cartilage associated protein##DQ893221|CRTAP|10491|cartilage associated protein##DQ896550|CRTAP|10491|cartilage associated protein##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)##BC047235|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128160|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_014517|UBP1|7342|upstream binding protein 1 (LBP-1a)##AK293100|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128161|UBP1|7342|upstream binding protein 1 (LBP-1a)	0.992878	0.0	denovo_WM_7:-83:0.223	denovo_WM_7:-84:0.221	denovo_WM_7:-85:0.413
chr3	67088114	67088259	reg1011436.p2	4.618	+	NM_032505 AK096640 AK300397	-39458	+	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	-536722	-	AF381545 BC140907 NM_015541 AY730707	-537334	-	BC007716 BC047024 TSC_hg19_v1_chr3_-_67705027 AK294598 AK310527 BC068602 NM_001177599 NM_003848	616876	-	BC038210 TSC_hg19_v1_chr3_+_67705138 AL832184	616964	+	AY325114 NM_001252216	952547	+	NM_032505|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK096640|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK300397|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC007716|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##BC047024|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AK294598|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AK310527|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##BC068602|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##NM_001177599|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##NM_003848|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AY325114|FAM19A1|407738|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1##NM_001252216|FAM19A1|407738|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	0.010621	0.044097	
chr7	7813095	7813214	reg1004056.p3	4.618	+	BC009868 NM_002947	-54917	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-132781	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-133067	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	195279	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	488562	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	488637	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.372986	0.0	denovo_WM_7:41:0.345
chrX	154563014	154563131	reg1010137.p1	4.618	+	AL834460 TSC_hg19_v1_chrX_-_154493774 AY052478 NM_171998 BC009714	-69268	-	NM_003372 TSC_hg19_v1_chrX_+_154444736 BC009570 AK313420 BC046094 Y17394 BC040002 AB464347 BT019604 CU692296	-118343	+	TSC_hg19_v1_chrX_+_154299784 AK310286 X64643 AK299194 AK313544 BC002999 BC006540 AB462964 AM392829 AY438030 CU678330 AK298886	-263282	+	AB463493 AM393055 AY191592 DQ892014 DQ895204 BC022305 BC005367 AK292785 Y12696 NM_001289	788	-	BC130510 BC130512 AF254576 NM_001017990 NM_080720 BC134365 HQ258044 BC101409 BC101415 BC101417 BC101418 CR542230 NM_001017991	47325	+	NM_012151 BC071963 AB462986 AM393473 AM393736 BC039693 DQ896667 NM_001007523 NM_001007524	48683	+	AL834460|RAB39B|116442|RAB39B, member RAS oncogene family##AY052478|RAB39B|116442|RAB39B, member RAS oncogene family##NM_171998|RAB39B|116442|RAB39B, member RAS oncogene family##BC009714|RAB39B|116442|RAB39B, member RAS oncogene family##NM_003372|VBP1|7411|von Hippel-Lindau binding protein 1##BC009570|VBP1|7411|von Hippel-Lindau binding protein 1##AK313420|VBP1|7411|von Hippel-Lindau binding protein 1##BC046094|VBP1|7411|von Hippel-Lindau binding protein 1##Y17394|VBP1|7411|von Hippel-Lindau binding protein 1##BC040002|VBP1|7411|von Hippel-Lindau binding protein 1##BT019604|VBP1|7411|von Hippel-Lindau binding protein 1##AK310286|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##X64643|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AK299194|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AK313544|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##BC002999|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##BC006540|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AM392829|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AY438030|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AK298886|BRCC3|79184|BRCA1/BRCA2-containing complex, subunit 3##AM393055|CLIC2|1193|chloride intracellular channel 2##AY191592|CLIC2|1193|chloride intracellular channel 2##DQ892014|CLIC2|1193|chloride intracellular channel 2##DQ895204|CLIC2|1193|chloride intracellular channel 2##BC022305|CLIC2|1193|chloride intracellular channel 2##BC005367|CLIC2|1193|chloride intracellular channel 2##AK292785|CLIC2|1193|chloride intracellular channel 2##Y12696|CLIC2|1193|chloride intracellular channel 2##NM_001289|CLIC2|1193|chloride intracellular channel 2##BC130510|H2AFB3|83740|H2A histone family, member B3##BC130512|H2AFB3|83740|H2A histone family, member B3##AF254576|H2AFB3|83740|H2A histone family, member B3##NM_001017990|H2AFB1|474382|H2A histone family, member B1##NM_080720|H2AFB3|83740|H2A histone family, member B3##BC134365|H2AFB2|474381|H2A histone family, member B2##HQ258044|H2AFB3|83740|H2A histone family, member B3##BC101409|H2AFB2|474381|H2A histone family, member B2##BC101415|H2AFB3|83740|H2A histone family, member B3##BC101417|H2AFB3|83740|H2A histone family, member B3##BC101418|H2AFB3|83740|H2A histone family, member B3##CR542230|H2AFB1|474382|H2A histone family, member B1##NM_001017991|H2AFB2|474381|H2A histone family, member B2##NM_012151|F8A1|8263|coagulation factor VIII-associated 1##BC071963|F8A1|8263|coagulation factor VIII-associated 1##AM393473|F8A1|8263|coagulation factor VIII-associated 1##AM393736|F8A1|8263|coagulation factor VIII-associated 1##BC039693|F8A1|8263|coagulation factor VIII-associated 1##DQ896667|F8A1|8263|coagulation factor VIII-associated 1##NM_001007523|F8A2|474383|coagulation factor VIII-associated 2##NM_001007524|F8A3|474384|coagulation factor VIII-associated 3	0.999682	0.0	denovo_WM_7:-25:0.822
chr1	58621931	58622085	reg1012465.p2	4.617	+	TSC_hg19_v1_chr1_-_57888785 AK313144	-733180	-	AB591028 HQ258464 BC130575 M16973 AK292740 AK313382 TSC_hg19_v1_chr1_-_57431689 BC020701 NM_000066 AK298425 AK316209 AK298444	-1190292	-	NM_000562 TSC_hg19_v1_chr1_+_57320466 AK309596 BC020702 BC132911 BC132913 HQ258328	-1301500	+	TSC_hg19_v1_chr1_-_58716179 CR933698 AB210012	94174	-	TSC_hg19_v1_chr1_-_58716210 AK095513 NM_021080	94201	-	TSC_hg19_v1_chr1_-_59012387 AF263547 NM_145243 AB048348 BC012915 AK308847	390415	-	AK313144|DAB1|1600|disabled homolog 1 (Drosophila)##HQ258464|C8B|732|complement component 8, beta polypeptide##BC130575|C8B|732|complement component 8, beta polypeptide##M16973|C8B|732|complement component 8, beta polypeptide##AK292740|C8B|732|complement component 8, beta polypeptide##AK313382|C8B|732|complement component 8, beta polypeptide##BC020701|C8B|732|complement component 8, beta polypeptide##NM_000066|C8B|732|complement component 8, beta polypeptide##AK298425|C8B|732|complement component 8, beta polypeptide##AK316209|C8B|732|complement component 8, beta polypeptide##AK298444|C8B|732|complement component 8, beta polypeptide##NM_000562|C8A|731|complement component 8, alpha polypeptide##AK309596|C8A|731|complement component 8, alpha polypeptide##BC020702|C8A|731|complement component 8, alpha polypeptide##BC132911|C8A|731|complement component 8, alpha polypeptide##BC132913|C8A|731|complement component 8, alpha polypeptide##HQ258328|C8A|731|complement component 8, alpha polypeptide##CR933698|DAB1|1600|disabled homolog 1 (Drosophila)##AB210012|DAB1|1600|disabled homolog 1 (Drosophila)##AK095513|DAB1|1600|disabled homolog 1 (Drosophila)##NM_021080|DAB1|1600|disabled homolog 1 (Drosophila)##NM_145243|OMA1|115209|OMA1 zinc metallopeptidase homolog (S. cerevisiae)##AB048348|OMA1|115209|OMA1 zinc metallopeptidase homolog (S. cerevisiae)##BC012915|OMA1|115209|OMA1 zinc metallopeptidase homolog (S. cerevisiae)##AK308847|OMA1|115209|OMA1 zinc metallopeptidase homolog (S. cerevisiae)	0.0	0.0	
chr19	1258932	1259044	reg1006358.p1	4.617	+	TSC_hg19_v1_chr19_+_1249886 BC060848 BC094778	-9104	+	TSC_hg19_v1_chr19_+_1248581 NM_177401	-10414	+	TSC_hg19_v1_chr19_+_1241811 BC050458 BC018079 CR542218	-17155	+	TSC_hg19_v1_chr19_+_1269330 NM_001280 AK095781 AK304185 AK304470 AK311601 AK128423 AF021336 AK094781 D78134 BC000901 BC000403	10317	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	11961	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	16579	+	BC060848|MIDN|90007|midnolin##BC094778|MIDN|90007|midnolin##NM_177401|MIDN|90007|midnolin##BC050458|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##BC018079|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##CR542218|ATP5D|513|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit##NM_001280|CIRBP|1153|cold inducible RNA binding protein##AK095781|CIRBP|1153|cold inducible RNA binding protein##AK304185|CIRBP|1153|cold inducible RNA binding protein##AK304470|CIRBP|1153|cold inducible RNA binding protein##AK311601|CIRBP|1153|cold inducible RNA binding protein##AK128423|CIRBP|1153|cold inducible RNA binding protein##AF021336|CIRBP|1153|cold inducible RNA binding protein##AK094781|CIRBP|1153|cold inducible RNA binding protein##D78134|CIRBP|1153|cold inducible RNA binding protein##BC000901|CIRBP|1153|cold inducible RNA binding protein##BC000403|CIRBP|1153|cold inducible RNA binding protein##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24	1.085185	0.0	
chr3	150945609	150945752	reg1011121.p1	4.617	+	AF002986 BC036815 NM_013308	-24714	-	AF399708 NM_053002 BC144559	-141003	+	TSC_hg19_v1_chr3_+_150803504 AK128165	-142175	+	AK289617 NM_001081455	21269	-	BC034989 D13626 NM_014879	50511	-	AF237763 BC112941 BC117565 AB031548 BC132888 BC132890 AK027784 NM_023915	88894	-	AF002986|GPR171|29909|G protein-coupled receptor 171##BC036815|GPR171|29909|G protein-coupled receptor 171##NM_013308|GPR171|29909|G protein-coupled receptor 171##AF399708|MED12L|116931|mediator complex subunit 12-like##NM_053002|MED12L|116931|mediator complex subunit 12-like##BC144559|MED12L|116931|mediator complex subunit 12-like##AK128165|MED12L|116931|mediator complex subunit 12-like##AK289617|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_001081455|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##BC034989|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##D13626|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##NM_014879|P2RY14|9934|purinergic receptor P2Y, G-protein coupled, 14##AF237763|GPR87|53836|G protein-coupled receptor 87##BC112941|GPR87|53836|G protein-coupled receptor 87##BC117565|GPR87|53836|G protein-coupled receptor 87##AB031548|GPR87|53836|G protein-coupled receptor 87##BC132888|GPR87|53836|G protein-coupled receptor 87##BC132890|GPR87|53836|G protein-coupled receptor 87##AK027784|GPR87|53836|G protein-coupled receptor 87##NM_023915|GPR87|53836|G protein-coupled receptor 87	0.0	0.996799	CTCF.p2:16:0.997
chr2	233806277	233806394	reg1012817.p1	4.616	+	TSC_hg19_v1_chr2_-_233792866 AK297390 NM_001114090 BC073962	-13476	-	TSC_hg19_v1_chr2_+_233740495 BC049848 BC035093	-65823	+	AY358535 NM_206895 BC130307 BC130309	-71341	+	TSC_hg19_v1_chr2_-_233877913 AK298315	71572	-	TSC_hg19_v1_chr2_-_233877933 BC031573 NM_019850 AK025225 AK300953	71615	-	BC069151 BC107053 NM_005383	91046	+	AK297390|NGEF|25791|neuronal guanine nucleotide exchange factor##NM_001114090|NGEF|25791|neuronal guanine nucleotide exchange factor##BC073962|NGEF|25791|neuronal guanine nucleotide exchange factor##BC049848|C2orf82|389084|chromosome 2 open reading frame 82##BC035093|C2orf82|389084|chromosome 2 open reading frame 82##AY358535|C2orf82|389084|chromosome 2 open reading frame 82##NM_206895|C2orf82|389084|chromosome 2 open reading frame 82##BC130307|C2orf82|389084|chromosome 2 open reading frame 82##BC130309|C2orf82|389084|chromosome 2 open reading frame 82##AK298315|NGEF|25791|neuronal guanine nucleotide exchange factor##BC031573|NGEF|25791|neuronal guanine nucleotide exchange factor##NM_019850|NGEF|25791|neuronal guanine nucleotide exchange factor##AK300953|NGEF|25791|neuronal guanine nucleotide exchange factor##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)	0.0	0.0	
chr4	48965186	48965317	reg1015152.p1	4.616	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	-56472	-	TSC_hg19_v1_chr4_+_48833104 NM_001079840 NM_001079841 NM_017830 AK297864 AF323665 AF324350 AK000462 BC003409 NM_001079839 NM_001079842 NM_001168254 BC088361	-132000	+	TSC_hg19_v1_chr4_-_48782286 BC040987 BC050336 NM_015030	-182953	-	AK025164 NM_025087 BC137387 BC137388	23021	+	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	3744035	+	CR749811 NM_001024611	3918534	-	CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##NM_001079840|OCIAD1|54940|OCIA domain containing 1##NM_001079841|OCIAD1|54940|OCIA domain containing 1##NM_017830|OCIAD1|54940|OCIA domain containing 1##AK297864|OCIAD1|54940|OCIA domain containing 1##AF323665|OCIAD1|54940|OCIA domain containing 1##AF324350|OCIAD1|54940|OCIA domain containing 1##AK000462|OCIAD1|54940|OCIA domain containing 1##BC003409|OCIAD1|54940|OCIA domain containing 1##NM_001079839|OCIAD1|54940|OCIA domain containing 1##NM_001079842|OCIAD1|54940|OCIA domain containing 1##NM_001168254|OCIAD1|54940|OCIA domain containing 1##BC088361|OCIAD1|54940|OCIA domain containing 1##BC040987|FRYL|285527|FRY-like##BC050336|FRYL|285527|FRY-like##NM_015030|FRYL|285527|FRY-like##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66	0.0	1.012209	CTCF.p2:-15:0.999
chr22	38945577	38945729	reg1010735.p1	4.615	+	NM_001098504 NM_006386 TSC_hg19_v1_chr22_-_38902346	-43203	-	BC029553 TSC_hg19_v1_chr22_-_38902315	-43338	-	AB209595 TSC_hg19_v1_chr22_-_38902309 AK024985 AK074224	-43347	-	D64108 CR456486 D63882 BC125163 BC125164 TSC_hg19_v1_chr22_-_38966189 BC035658 NM_007068 AK292617	20501	-	TSC_hg19_v1_chr22_-_39052371 AK301819	106710	-	TSC_hg19_v1_chr22_-_39052579 NM_001013647	106953	-	NM_001098504|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17##NM_006386|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17##BC029553|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17##AB209595|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17##AK024985|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17##AK074224|DDX17|10521|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17##D64108|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##CR456486|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##D63882|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##BC125163|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##BC125164|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##BC035658|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##NM_007068|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##AK292617|DMC1|11144|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)##AK301819|LOC646851|646851|putative uncharacterized protein LOC388900##NM_001013647|LOC646851|646851|putative uncharacterized protein LOC388900	0.964863	0.0	denovo_WM_7:-20:0.782
chr3	182228062	182228242	reg1013165.p2	4.615	+	BC013923 L07335 Z31560 AB464715 EU446654 TSC_hg19_v1_chr3_+_181430202	-798014	+	NM_003106 TSC_hg19_v1_chr3_+_181429713 AK312595	-798439	+	BC016393 TSC_hg19_v1_chr3_+_181417398 AL157425	-810760	+	TSC_hg19_v1_chr3_+_182511288 BC042180 NM_014616	283135	+	AK296750 TSC_hg19_v1_chr3_+_182511291	283143	+	TSC_hg19_v1_chr3_+_182511375 AF156548	283237	+	BC013923|SOX2|6657|SRY (sex determining region Y)-box 2##L07335|SOX2|6657|SRY (sex determining region Y)-box 2##Z31560|SOX2|6657|SRY (sex determining region Y)-box 2##EU446654|SOX2|6657|SRY (sex determining region Y)-box 2##NM_003106|SOX2|6657|SRY (sex determining region Y)-box 2##BC016393|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##AL157425|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##BC042180|ATP11B|23200|ATPase, class VI, type 11B##NM_014616|ATP11B|23200|ATPase, class VI, type 11B##AK296750|ATP11B|23200|ATPase, class VI, type 11B##AF156548|ATP11B|23200|ATPase, class VI, type 11B	0.01263	0.0	
chr5	95116861	95117010	reg1013027.p2	4.615	+	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-49399	+	TSC_hg19_v1_chr5_+_95067066 BC047884 NM_014899 BC020231 BC013169 BC041337 AB020685 AK290034	-50067	+	AY027526 AK292338 AK310260 BC047333 AK093225 AX747999 BC032832 NM_031952	-98249	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	41465	-	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	41585	-	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	180563	-	BC047884|RHOBTB3|22836|Rho-related BTB domain containing 3##NM_014899|RHOBTB3|22836|Rho-related BTB domain containing 3##BC020231|RHOBTB3|22836|Rho-related BTB domain containing 3##BC013169|RHOBTB3|22836|Rho-related BTB domain containing 3##BC041337|RHOBTB3|22836|Rho-related BTB domain containing 3##AB020685|RHOBTB3|22836|Rho-related BTB domain containing 3##AK290034|RHOBTB3|22836|Rho-related BTB domain containing 3##AY027526|SPATA9|83890|spermatogenesis associated 9##AK292338|SPATA9|83890|spermatogenesis associated 9##AK310260|SPATA9|83890|spermatogenesis associated 9##BC047333|SPATA9|83890|spermatogenesis associated 9##AK093225|SPATA9|83890|spermatogenesis associated 9##BC032832|SPATA9|83890|spermatogenesis associated 9##NM_031952|SPATA9|83890|spermatogenesis associated 9##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2	0.0	0.974759	CTCF.p2:-16:0.975
chr1	161036597	161036776	reg1003279.p2	4.614	+	TSC_hg19_v1_chr1_-_161015769 NM_007122 NM_207005	-20919	-	AK314876 BC035505 TSC_hg19_v1_chr1_-_161015745	-20969	-	AF111713 TSC_hg19_v1_chr1_-_161008767 NM_001113205 NM_001113206 NM_001113207 AK299487	-27928	-	TSC_hg19_v1_chr1_-_161039466 AB463226 BC053688 BC025732	2781	-	TSC_hg19_v1_chr1_-_161039608 BC043387	2913	-	TSC_hg19_v1_chr1_-_161039656 BX537846	2971	-	NM_007122|USF1|7391|upstream transcription factor 1##NM_207005|USF1|7391|upstream transcription factor 1##AK314876|USF1|7391|upstream transcription factor 1##BC035505|USF1|7391|upstream transcription factor 1##NM_001113205|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113206|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113207|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##AK299487|F11R|50848|F11 receptor##BC053688|ARHGAP30|257106|Rho GTPase activating protein 30##BC025732|ARHGAP30|257106|Rho GTPase activating protein 30##BC043387|ARHGAP30|257106|Rho GTPase activating protein 30##BX537846|ARHGAP30|257106|Rho GTPase activating protein 30	0.0	0.0	
chr11	9648746	9648926	reg1006904.p2	4.614	+	AK122837 NM_001143976	-52603	+	TSC_hg19_v1_chr11_+_9595453 AB384747 EU832325 EU832410	-53369	+	BC051831 TSC_hg19_v1_chr11_+_9595437	-53403	+	TSC_hg19_v1_chr11_+_9685623 AK096859	36778	+	TSC_hg19_v1_chr11_+_9685627 NM_015055	36800	+	BC000616 TSC_hg19_v1_chr11_+_9685651 AF134894	36815	+	AK122837|WEE1|7465|WEE1 homolog (S. pombe)##NM_001143976|WEE1|7465|WEE1 homolog (S. pombe)##EU832325|WEE1|7465|WEE1 homolog (S. pombe)##EU832410|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)##AK096859|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##NM_015055|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##BC000616|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AF134894|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit	0.0	0.0	
chr12	111015911	111016036	reg1010694.p2	4.614	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-75898	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-76063	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-109304	+	TSC_hg19_v1_chr12_-_111020755 AY357944	4820	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	5097	-	AK124744 TSC_hg19_v1_chr12_-_111021124	5153	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	0.0	0.0	
chr19	1897985	1898165	reg1005430.p3	4.614	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-12571	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-12604	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-12630	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	7277	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	7330	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	43088	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	0.982274	0.0	denovo_WM_7:97:0.329	denovo_WM_7:98:0.327	denovo_WM_7:99:0.326
chr4	159999128	159999249	reg1010495.p2	4.614	+	AK058100 NM_152543	-42856	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-308903	+	TSC_hg19_v1_chr4_+_159690177 NM_020840	-309010	+	AK294459 NM_014247	189809	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	3085963	-	TSC_hg19_v1_chr4_-_164088002 AK097352	4088804	-	AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##NM_020840|FNIP2|57600|folliculin interacting protein 2##AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.062201	0.0	
chr5	160820376	160820478	reg1009647.p2	4.614	+	AB018258 AK295081 AK090832 AX746642 NM_025153	-541296	-	AK025130 TSC_hg19_v1_chr5_-_160112393	-708088	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-971524	+	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	154699	-	NM_000811	292230	+	AK289792 NM_000806 AK295160	453814	+	AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6##AK289792|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_000806|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK295160|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1	1.998198	0.0	denovo_WM_7:-82:0.560	denovo_WM_7:-83:0.213	denovo_WM_7:-97:0.412	denovo_WM_7:-98:0.408
chr1	174936417	174936581	reg1007370.p2	4.613	+	AK316355 NM_001243764 AK316219 AK298711	-2578	+	NM_001035230 BC012094	-91830	+	NM_001243763 AL049701	-92940	+	NM_001007214 AK093425 AX748118	32084	+	TSC_hg19_v1_chr1_+_174968845 NM_014412	32368	+	TSC_hg19_v1_chr1_+_174969090 BC005975	32582	+	AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001007214|CACYBP|27101|calcyclin binding protein##AK093425|CACYBP|27101|calcyclin binding protein##NM_014412|CACYBP|27101|calcyclin binding protein##BC005975|CACYBP|27101|calcyclin binding protein	0.996443	0.0	
chr14	71904806	71904986	reg1006718.p2	4.613	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-530445	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-530763	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-629087	-	AF090989 AF090990 NM_015556	91145	+	AK294895 NM_001204423	493920	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	494257	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.099633	0.0	
chr19	54885591	54885735	reg1013444.p2	4.613	+	AK303261 TSC_hg19_v1_chr19_-_54882123 AK097869	-3571	-	TSC_hg19_v1_chr19_-_54876672 NM_002287 NM_021706	-8968	-	TSC_hg19_v1_chr19_-_54876541 AK290415 AK315419	-9112	-	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	40988	+	AB162930 TSC_hg19_v1_chr19_+_54926723	41059	+	NM_052925	74401	+	AK303261|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK097869|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_002287|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_021706|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK290415|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK315419|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8	0.969952	0.0	denovo_WM_7:42:0.678	denovo_WM_7:43:0.292
chr8	125654363	125654543	reg1008291.p2	4.613	+	AF116674 TSC_hg19_v1_chr8_-_125580771	-73692	-	TSC_hg19_v1_chr8_-_125579395 AK126989	-75047	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	-103069	+	TSC_hg19_v1_chr8_-_125716430 U50573	61979	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	85992	-	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	86270	-	AF116674|MTSS1|9788|metastasis suppressor 1##AK126989|MTSS1|9788|metastasis suppressor 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##U50573|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1	0.0	0.0	
chr10	94661827	94661999	reg1009825.p2	4.612	+	AK293857 NM_019053 AF220217 TSC_hg19_v1_chr10_+_94608276 AL832501 EF571007 AK315544 BC028395 CU688490 EU832839 GQ129240	-53656	+	NM_001013848	-67444	+	TSC_hg19_v1_chr10_+_94449711 NM_002729 AK309463 AK314891 BC014336 BC015110 L16499 X67235 AB528006 BC050638 EU446478	-212204	+	AY356349 NM_183374	159107	+	AK027560 NM_057157	171318	+	AK075374 NM_000783 AF005418	171743	+	AK293857|EXOC6|54536|exocyst complex component 6##NM_019053|EXOC6|54536|exocyst complex component 6##AF220217|EXOC6|54536|exocyst complex component 6##AL832501|EXOC6|54536|exocyst complex component 6##EF571007|EXOC6|54536|exocyst complex component 6##AK315544|EXOC6|54536|exocyst complex component 6##BC028395|EXOC6|54536|exocyst complex component 6##EU832839|EXOC6|54536|exocyst complex component 6##GQ129240|EXOC6|54536|exocyst complex component 6##NM_001013848|EXOC6|54536|exocyst complex component 6##NM_002729|HHEX|3087|hematopoietically expressed homeobox##AK314891|HHEX|3087|hematopoietically expressed homeobox##BC014336|HHEX|3087|hematopoietically expressed homeobox##BC015110|HHEX|3087|hematopoietically expressed homeobox##L16499|HHEX|3087|hematopoietically expressed homeobox##X67235|HHEX|3087|hematopoietically expressed homeobox##BC050638|HHEX|3087|hematopoietically expressed homeobox##EU446478|HHEX|3087|hematopoietically expressed homeobox##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##AK027560|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_057157|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AK075374|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_000783|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AF005418|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1	0.0	0.0	
chr1	155194519	155194645	reg1011842.p1	4.612	+	TSC_hg19_v1_chr1_+_155179028 BC035616 AX775989	-15556	+	AK311031 TSC_hg19_v1_chr1_-_155178970	-15605	-	NM_002455 NM_198883 AK313863 BC001906	-16044	+	BC030240 BC000349 AK297653 TSC_hg19_v1_chr1_-_155197234	2631	-	K02920 AB527624 BC003356 D13286 AK301374 M19285 M22212 TSC_hg19_v1_chr1_-_155211041 AK300186 AK302000	16384	-	TSC_hg19_v1_chr1_-_155211049 AK298900 AK301879 NM_001171812 NM_000157	16476	-	BC035616|MTX1|4580|metaxin 1##AX775989|MTX1|4580|metaxin 1##AK311031|THBS3|7059|thrombospondin 3##NM_002455|MTX1|4580|metaxin 1##NM_198883|MTX1|4580|metaxin 1##AK313863|MTX1|4580|metaxin 1##BC001906|MTX1|4580|metaxin 1##BC030240|GBAP1|2630|glucosidase, beta, acid pseudogene 1##BC000349|GBAP1|2630|glucosidase, beta, acid pseudogene 1##AK297653|GBAP1|2630|glucosidase, beta, acid pseudogene 1##K02920|GBA|2629|glucosidase, beta, acid##BC003356|GBA|2629|glucosidase, beta, acid##D13286|GBA|2629|glucosidase, beta, acid##AK301374|GBA|2629|glucosidase, beta, acid##M19285|GBA|2629|glucosidase, beta, acid##AK300186|GBA|2629|glucosidase, beta, acid##AK302000|GBA|2629|glucosidase, beta, acid##AK298900|GBA|2629|glucosidase, beta, acid##AK301879|GBA|2629|glucosidase, beta, acid##NM_001171812|GBA|2629|glucosidase, beta, acid##NM_000157|GBA|2629|glucosidase, beta, acid	0.994088	0.0	denovo_WM_7:-42:0.779
chr1	16715013	16715189	reg1011290.p1	4.612	+	NM_001114600 NM_015609 BC023988 TSC_hg19_v1_chr1_+_16693726 BX640985 AJ295987 AB097042 AB097043 AB097046 AK297926 AK298576 AK308787 AL050028 AK316205 BC065538 AB097044 AB097045 BC010631	-21430	+	TSC_hg19_v1_chr1_-_16678969 BC063864 NM_018994 AK055598 BC043410	-36153	-	TSC_hg19_v1_chr1_-_16678922 AK310671	-36183	-	AK128106 BC022039 AK311614 AY327405 NM_198546	48801	-	NM_001145277 NM_001145278 NM_018090 TSC_hg19_v1_chr1_+_16767200	52083	+	AK223344 TSC_hg19_v1_chr1_+_16767218 AK300764 AK302227 AK023545 BC018914	52124	+	NM_001114600|C1orf144|26099|chromosome 1 open reading frame 144##NM_015609|C1orf144|26099|chromosome 1 open reading frame 144##BC023988|C1orf144|26099|chromosome 1 open reading frame 144##BX640985|C1orf144|26099|chromosome 1 open reading frame 144##AJ295987|C1orf144|26099|chromosome 1 open reading frame 144##AB097042|C1orf144|26099|chromosome 1 open reading frame 144##AB097043|C1orf144|26099|chromosome 1 open reading frame 144##AB097046|C1orf144|26099|chromosome 1 open reading frame 144##AK297926|C1orf144|26099|chromosome 1 open reading frame 144##AK298576|C1orf144|26099|chromosome 1 open reading frame 144##AK308787|C1orf144|26099|chromosome 1 open reading frame 144##AL050028|C1orf144|26099|chromosome 1 open reading frame 144##AK316205|C1orf144|26099|chromosome 1 open reading frame 144##BC065538|C1orf144|26099|chromosome 1 open reading frame 144##AB097044|C1orf144|26099|chromosome 1 open reading frame 144##AB097045|C1orf144|26099|chromosome 1 open reading frame 144##BC010631|C1orf144|26099|chromosome 1 open reading frame 144##BC063864|FBXO42|54455|F-box protein 42##NM_018994|FBXO42|54455|F-box protein 42##AK055598|FBXO42|54455|F-box protein 42##BC043410|FBXO42|54455|F-box protein 42##AK310671|FBXO42|54455|F-box protein 42##AK128106|SPATA21|374955|spermatogenesis associated 21##BC022039|SPATA21|374955|spermatogenesis associated 21##AK311614|SPATA21|374955|spermatogenesis associated 21##AY327405|SPATA21|374955|spermatogenesis associated 21##NM_198546|SPATA21|374955|spermatogenesis associated 21##NM_001145277|NECAP2|55707|NECAP endocytosis associated 2##NM_001145278|NECAP2|55707|NECAP endocytosis associated 2##NM_018090|NECAP2|55707|NECAP endocytosis associated 2##AK223344|NECAP2|55707|NECAP endocytosis associated 2##AK300764|NECAP2|55707|NECAP endocytosis associated 2##AK302227|NECAP2|55707|NECAP endocytosis associated 2##AK023545|NECAP2|55707|NECAP endocytosis associated 2##BC018914|NECAP2|55707|NECAP endocytosis associated 2	0.996481	0.0	
chr1	204889615	204889714	reg1008802.p2	4.612	+	TSC_hg19_v1_chr1_+_204839989 AK308686	-49681	+	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	-91852	+	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	-235073	-	NM_001160331 BC137013 BC144454 BC144455 AB384522	23734	+	TSC_hg19_v1_chr1_+_204938044 BC008124	48398	+	TSC_hg19_v1_chr1_+_205012339 NM_005076	122674	+	AK308686|NFASC|23114|neurofascin##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##NM_001160331|NFASC|23114|neurofascin##BC137013|NFASC|23114|neurofascin##BC144454|NFASC|23114|neurofascin##BC144455|NFASC|23114|neurofascin##BC008124|NFASC|23114|neurofascin##NM_005076|CNTN2|6900|contactin 2 (axonal)	1.853187	0.0	denovo_WM_7:38:0.291	denovo_WM_7:39:0.255	denovo_WM_7:40:0.286
chr1	40845180	40845285	reg1010331.p2	4.612	+	NM_001198978 AK303975 AL133206	-4906	+	TSC_hg19_v1_chr1_+_40839438 AK313105	-5793	+	TSC_hg19_v1_chr1_+_40839382 NM_022733	-5857	+	AK308280 NM_001198979	13784	+	AK316218 NM_001198980 AK298702	17256	+	AK091612 AX747095 AL137241 TSC_hg19_v1_chr1_+_40915792	70568	+	NM_001198978|SMAP2|64744|small ArfGAP2##AK303975|SMAP2|64744|small ArfGAP2##AL133206|SMAP2|64744|small ArfGAP2##AK313105|SMAP2|64744|small ArfGAP2##NM_022733|SMAP2|64744|small ArfGAP2##AK308280|SMAP2|64744|small ArfGAP2##NM_001198979|SMAP2|64744|small ArfGAP2##AK316218|SMAP2|64744|small ArfGAP2##NM_001198980|SMAP2|64744|small ArfGAP2##AK298702|SMAP2|64744|small ArfGAP2##AK091612|ZNF643|65243|zinc finger protein 643##AL137241|ZNF643|65243|zinc finger protein 643	0.995609	0.0	
chr15	31766886	31767048	reg1013431.p2	4.612	+	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	-147629	+	NM_001243538	-243918	-	GQ502181 HM135791 NM_001252020	-313539	-	AJ430383 NM_130901	180574	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	395862	-	TSC_hg19_v1_chr15_-_32162898 AK126002	395976	-	AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##AK126002|OTUD7A|161725|OTU domain containing 7A	0.133099	0.0	
chr18	4284123	4284262	reg1011871.p1	4.612	+	AK294777 AK294717 NM_001242762 NM_001242763	-409465	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-409908	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-438862	-	AK304101 TSC_hg19_v1_chr18_-_4455255	171061	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	171078	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	913060	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.99837	0.0	denovo_WM_7:18:0.477	denovo_WM_7:19:0.477
chr2	90482078	90482207	reg1009029.p1	4.612	+	TSC_hg19_v1_chr2_+_90211706 Z69013	-270424	+	TSC_hg19_v1_chr2_+_90077732 AJ131061	-404388	+	Z27171 L06158 AF490907 X72480 AF490924 X72424 X72441 X72477 U44792 X72427 AJ548508 L01279 L38434 M74019 M87478 S67637 U43765 U43766 U43770 U43773 U66190 X85996 X85997 Y14736 AJ010446 BC073775 AF417853 TSC_hg19_v1_chr2_-_89619885 BC070334	-862289	-	TSC_hg19_v1_chr2_-_91847997 BC030764	1365861	-	AK097438 BC021716 NM_144705 AK296678 CU692394	5055108	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	5209340	+	BC070334|IGKC|3514|immunoglobulin kappa constant##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein	0.0	0.0	
chr8	23084023	23084204	reg1015096.p1	4.612	+	TSC_hg19_v1_chr8_-_23082664 NM_003844	-1447	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	-1501	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-62618	-	AK097202 NM_152272 BC042050	17045	+	TSC_hg19_v1_chr8_+_23104147 AK315664 AK021776	20022	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	20129	+	NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7##AK315664|CHMP7|91782|charged multivesicular body protein 7##AK021776|CHMP7|91782|charged multivesicular body protein 7##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7	0.990824	0.0	denovo_WM_7:-98:0.237	denovo_WM_7:-99:0.237	denovo_WM_7:-100:0.237	denovo_WM_7:-101:0.237
chr10	115615098	115615256	reg1013872.p2	4.611	+	TSC_hg19_v1_chr10_+_115614419 NM_198514 AK090631 AX746547	-758	+	D42045 NM_014881 AK307187	-1261	-	BC037870 FJ236306 NM_182601	-90600	+	NM_000684 J03019	188632	+	TSC_hg19_v1_chr10_-_115933963 BC100670 BC103499 BC103504 BC105632 BC152306 BC107430 BC070368 BX537964 AK307517 AK092620 AX747632 BC020842 BC030557	318755	-	NM_018017	319186	-	NM_198514|NHLRC2|374354|NHL repeat containing 2##AK090631|NHLRC2|374354|NHL repeat containing 2##D42045|DCLRE1A|9937|DNA cross-link repair 1A##NM_014881|DCLRE1A|9937|DNA cross-link repair 1A##BC037870|C10orf81|79949|chromosome 10 open reading frame 81##FJ236306|C10orf81|79949|chromosome 10 open reading frame 81##NM_182601|C10orf81|79949|chromosome 10 open reading frame 81##NM_000684|ADRB1|153|adrenergic, beta-1-, receptor##J03019|ADRB1|153|adrenergic, beta-1-, receptor##BC100670|C10orf118|55088|chromosome 10 open reading frame 118##BC103499|C10orf118|55088|chromosome 10 open reading frame 118##BC103504|C10orf118|55088|chromosome 10 open reading frame 118##BC105632|C10orf118|55088|chromosome 10 open reading frame 118##BC152306|C10orf118|55088|chromosome 10 open reading frame 118##BC107430|C10orf118|55088|chromosome 10 open reading frame 118##BC070368|C10orf118|55088|chromosome 10 open reading frame 118##BX537964|C10orf118|55088|chromosome 10 open reading frame 118##AK307517|C10orf118|55088|chromosome 10 open reading frame 118##AK092620|C10orf118|55088|chromosome 10 open reading frame 118##BC020842|C10orf118|55088|chromosome 10 open reading frame 118##BC030557|C10orf118|55088|chromosome 10 open reading frame 118##NM_018017|C10orf118|55088|chromosome 10 open reading frame 118	0.997915	0.0	denovo_WM_7:60:0.636
chr1	203309315	203309495	reg1010053.p1	4.611	+	TSC_hg19_v1_chr1_+_203274646 NM_006763 U72649 Y09943 BC105948 BC105949 AB463451 EU446924	-34716	+	U62662 BC103695 BC105680 BC105681 BC105682 U29615 TSC_hg19_v1_chr1_-_203198802 AK055165 AK309341 AK225245 AK314331 NM_003465	-110590	-	TSC_hg19_v1_chr1_-_203155913 NM_001276	-153479	-	TSC_hg19_v1_chr1_-_203317366 AB590335 DQ892112 DQ895306 X75546	7979	-	TSC_hg19_v1_chr1_-_203320217 AK291632 AK303866 AK092899 AX747797 BC035281	10804	-	AK172740 TSC_hg19_v1_chr1_-_203320256	10856	-	NM_006763|BTG2|7832|BTG family, member 2##U72649|BTG2|7832|BTG family, member 2##Y09943|BTG2|7832|BTG family, member 2##BC105948|BTG2|7832|BTG family, member 2##BC105949|BTG2|7832|BTG family, member 2##EU446924|BTG2|7832|BTG family, member 2##U62662|CHIT1|1118|chitinase 1 (chitotriosidase)##BC103695|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105680|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105681|CHIT1|1118|chitinase 1 (chitotriosidase)##BC105682|CHIT1|1118|chitinase 1 (chitotriosidase)##U29615|CHIT1|1118|chitinase 1 (chitotriosidase)##AK055165|CHIT1|1118|chitinase 1 (chitotriosidase)##AK309341|CHIT1|1118|chitinase 1 (chitotriosidase)##AK225245|CHIT1|1118|chitinase 1 (chitotriosidase)##AK314331|CHIT1|1118|chitinase 1 (chitotriosidase)##NM_003465|CHIT1|1118|chitinase 1 (chitotriosidase)##NM_001276|CHI3L1|1116|chitinase 3-like 1 (cartilage glycoprotein-39)##DQ892112|FMOD|2331|fibromodulin##DQ895306|FMOD|2331|fibromodulin##X75546|FMOD|2331|fibromodulin##AK291632|FMOD|2331|fibromodulin##AK303866|FMOD|2331|fibromodulin##AK092899|FMOD|2331|fibromodulin##BC035281|FMOD|2331|fibromodulin	0.0	0.997806	CTCF.p2:-28:0.998
chr19	46014183	46014321	reg1012955.p1	4.611	+	TSC_hg19_v1_chr19_+_46010748 BC026019 BC038224 Z46389	-3479	+	TSC_hg19_v1_chr19_+_46010736 AK314812	-3529	+	TSC_hg19_v1_chr19_+_46010688 NM_003370	-3564	+	AB528200 AM392686 EU832556 TSC_hg19_v1_chr19_-_46088061 BC064146 BC005059 BC047316	73790	-	TSC_hg19_v1_chr19_-_46088075 AK025840	73826	-	TSC_hg19_v1_chr19_-_46088084 AK098798 NM_001017989 NM_025136	73852	-	BC026019|VASP|7408|vasodilator-stimulated phosphoprotein##BC038224|VASP|7408|vasodilator-stimulated phosphoprotein##Z46389|VASP|7408|vasodilator-stimulated phosphoprotein##AK314812|VASP|7408|vasodilator-stimulated phosphoprotein##NM_003370|VASP|7408|vasodilator-stimulated phosphoprotein##AM392686|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##EU832556|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC064146|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC005059|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC047316|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AK025840|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AK098798|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_001017989|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_025136|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	1.983302	0.0	denovo_WM_7:0:0.326	denovo_WM_7:-2:0.560	denovo_WM_7:-52:0.493	denovo_WM_7:-53:0.493
chr3	161408104	161408200	reg1010072.p2	4.611	+	NM_001080440	-193557	+	AF458592 BC037817 NM_001040100	-318344	-	AK308865 BC013317 NM_015938 TSC_hg19_v1_chr3_+_160939098 AF132941 AK296710	-469031	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	3388126	-	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	3506353	-	M16474 BC018141 BC008396 TSC_hg19_v1_chr3_-_165555212 AK292063 M16541	4147041	-	NM_001080440|OTOL1|131149|otolin 1##AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##AK308865|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC013317|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_015938|NMD3|51068|NMD3 homolog (S. cerevisiae)##AF132941|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK296710|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3##M16474|BCHE|590|butyrylcholinesterase##BC018141|BCHE|590|butyrylcholinesterase##BC008396|BCHE|590|butyrylcholinesterase##AK292063|BCHE|590|butyrylcholinesterase##M16541|BCHE|590|butyrylcholinesterase	0.05309	0.0	
chr4	88312181	88312359	reg1011342.p1	4.611	+	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	-68245	-	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	-170608	-	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	-344019	+	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	1	-	TSC_hg19_v1_chr4_-_88312341 AK075348 BC008650 BC036001 BC016367 BC011995 NM_016245	121	-	TSC_hg19_v1_chr4_+_88343781 NM_001248011 NM_024047 AK027295 AK074845 NM_198038 AF265341 AF273028 AK075408 AK308028 BC000542 AY359123 CU674266	31609	+	HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AK075348|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC008650|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC036001|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC016367|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC011995|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##NM_016245|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##NM_001248011|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##NM_024047|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK027295|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK074845|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##NM_198038|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AF265341|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AF273028|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK075408|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK308028|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##BC000542|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AY359123|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9	0.999599	0.0	denovo_WM_7:-10:0.838
chr7	139043340	139043476	reg1012758.p2	4.611	+	TSC_hg19_v1_chr7_+_139026098 AF161386 BC008467 AK297642 NM_001244584 AK093018 AB528093 AM393147 DQ893149 DQ896444	-17314	+	NM_197964	-17512	+	AK298166 NM_001244585 TSC_hg19_v1_chr7_+_139025217	-18236	+	TSC_hg19_v1_chr7_+_139044639 NM_016019 AK093864 AK001519 BC042625 BC050708	1226	+	TSC_hg19_v1_chr7_+_139044675 BC017163	1269	+	TSC_hg19_v1_chr7_+_139044699 AK001476	1290	+	AF161386|C7orf55|154791|chromosome 7 open reading frame 55##BC008467|C7orf55|154791|chromosome 7 open reading frame 55##AK297642|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##NM_001244584|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AK093018|C7orf55|154791|chromosome 7 open reading frame 55##AM393147|C7orf55|154791|chromosome 7 open reading frame 55##DQ893149|C7orf55|154791|chromosome 7 open reading frame 55##DQ896444|C7orf55|154791|chromosome 7 open reading frame 55##NM_197964|C7orf55|154791|chromosome 7 open reading frame 55##AK298166|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##NM_001244585|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##NM_016019|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AK093864|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AK001519|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##BC042625|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##BC050708|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##BC017163|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AK001476|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)	0.0	0.0	
chr9	112184948	112185083	reg1009356.p1	4.611	+	TSC_hg19_v1_chr9_-_112083330 AB032179	-101725	-	TSC_hg19_v1_chr9_-_112083007 AF153416 AF153418 NM_018424 NM_019114	-102003	-	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	-255486	-	AK296265 AK296388 AK316118 NM_001145371 NM_001145372	6198	-	BX648253 NM_001145369 NM_001145370	28648	-	TSC_hg19_v1_chr9_-_112260588 BC063287 AK295875 AK304434 AK316066 NM_001145368 NM_002829	75574	-	AB032179|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153416|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF153418|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_018424|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##NM_019114|EPB41L4B|54566|erythrocyte membrane protein band 4.1 like 4B##AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4##AK296265|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK296388|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316118|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145371|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145372|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BX648253|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145369|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145370|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##BC063287|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK295875|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK304434|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##AK316066|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_001145368|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3##NM_002829|PTPN3|5774|protein tyrosine phosphatase, non-receptor type 3	0.997707	0.0	denovo_WM_7:-35:0.941
chr17	76373353	76373533	reg1003629.p1	4.610	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-17286	-	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-145980	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-163046	+	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	1287	+	NM_173628	200032	-	AK316277 TSC_hg19_v1_chr17_-_76719649	346204	-	AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316277|CYTH1|9267|cytohesin 1	0.999494	0.0	
chr6	102293610	102293736	reg1010045.p1	4.610	+	NM_001166247 NM_021956 NM_175768 AK291965 AK289542 BC063814	-446768	+	BC037954 TSC_hg19_v1_chr6_+_101846686	-446996	+	HM149340 TSC_hg19_v1_chr6_+_101841583	-452167	+	TSC_hg19_v1_chr6_-_105307736 AK291760	3014052	-	TSC_hg19_v1_chr6_-_105307774 BC038119 BC034982	3014089	-	TSC_hg19_v1_chr6_-_105307783 AK131207 NM_020771	3014115	-	NM_001166247|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##NM_021956|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##NM_175768|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK291965|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK289542|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##BC063814|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##BC037954|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK291760|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##BC038119|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##BC034982|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##AK131207|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##NM_020771|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	0.0	0.0	
chr6_ssto_hap7	2506323	2506455	reg1005567.p1	4.610	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr10	8173282	8173462	reg1012364.p1	4.609	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-75889	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-76597	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-76723	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	2873885	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	2873913	+	AK299548 TSC_hg19_v1_chr10_+_11047339	2873968	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	0.034033	0.0	
chr1	192494235	192494382	reg1012805.p1	4.609	+	AY643711 NM_001039152	-208187	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-366705	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-2047573	-	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	50600	+	NM_002927 NM_144766 AF030107 BC016667	110976	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	283876	+	AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa	0.943929	0.0	denovo_WM_7:49:0.342	denovo_WM_7:50:0.461
chr14	59107843	59107938	reg1008957.p1	4.609	+	TSC_hg19_v1_chr14_+_59104741 NM_001079520 NM_016651	-3144	+	AK302579 NM_001244193 AK310356 AK302718	-201464	+	NM_014749 BC066647	-213159	+	TSC_hg19_v1_chr14_+_59655450 BX648383 BC064999 NM_014992 BC038428 AK291790 AK021890 BX247986	547514	+	TSC_hg19_v1_chr14_-_59931852 DQ893361 DQ896680 AY288418 M76676	824032	-	TSC_hg19_v1_chr14_-_59932051 BC032831 NM_022571	824166	-	NM_001079520|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##NM_016651|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##AK302579|KIAA0586|9786|KIAA0586##NM_001244193|KIAA0586|9786|KIAA0586##AK310356|KIAA0586|9786|KIAA0586##AK302718|KIAA0586|9786|KIAA0586##NM_014749|KIAA0586|9786|KIAA0586##BC066647|KIAA0586|9786|KIAA0586##BC064999|DAAM1|23002|dishevelled associated activator of morphogenesis 1##NM_014992|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BC038428|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK291790|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK021890|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BX247986|DAAM1|23002|dishevelled associated activator of morphogenesis 1##DQ893361|GPR135|64582|G protein-coupled receptor 135##DQ896680|GPR135|64582|G protein-coupled receptor 135##AY288418|GPR135|64582|G protein-coupled receptor 135##M76676|GPR135|64582|G protein-coupled receptor 135##BC032831|GPR135|64582|G protein-coupled receptor 135##NM_022571|GPR135|64582|G protein-coupled receptor 135	0.996588	0.0	denovo_WM_7:44:0.359	denovo_WM_7:46:0.358
chr16	11772555	11772673	reg1011344.p2	4.609	+	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-10316	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-91825	-	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	-92427	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	64042	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	118437	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	118501	-	NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A	0.0	0.0	
chr16	58280130	58280277	reg1006857.p1	4.609	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	-48492	-	TSC_hg19_v1_chr16_-_58163286 NM_013242	-116893	-	TSC_hg19_v1_chr16_-_58163283 AK027099 AK297819 BC005152 AF087845 AF093680	-116971	-	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	3665	+	AK302175 AK058068 BC057843 NM_001080492	48711	-	NM_001126129 NM_001126130 NM_022770 TSC_hg19_v1_chr16_+_58426340 AK315622 AK023974 BC014437 BC005879 CR457283	146198	+	DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_013242|C16orf80|29105|chromosome 16 open reading frame 80##AK027099|C16orf80|29105|chromosome 16 open reading frame 80##AK297819|C16orf80|29105|chromosome 16 open reading frame 80##BC005152|C16orf80|29105|chromosome 16 open reading frame 80##AF087845|C16orf80|29105|chromosome 16 open reading frame 80##AF093680|C16orf80|29105|chromosome 16 open reading frame 80##AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54##NM_001126129|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_001126130|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_022770|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK315622|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK023974|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC014437|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC005879|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##CR457283|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)	0.0	0.0	
chr20	16058835	16058972	reg1008270.p1	4.609	+	BC018687 NM_001033087	-881400	+	AB040902 AF169677 TSC_hg19_v1_chr20_-_14318278 BC020870 AK027297 AK074883 NM_013281 NM_198391	-1740647	-	TSC_hg19_v1_chr20_+_13976263 BC101216 BC101217 BC101218 BC101219 BC126936 BC128036 EF159161	-2082567	+	TSC_hg19_v1_chr20_-_16553995 AB385485 CU690726 AK307399 AB046810 BC150261 BX647572 AK095322 AY166853 BC050577 NM_001199865 NM_001199866 NM_024704	495110	-	NM_003092 NM_198220 TSC_hg19_v1_chr20_+_16710679 BC018022 BC036737 AK313004 BC022311 BC008311 M15841	651760	+	BC101688 BC101690 AF233261 NM_020157 AY359082 AF243505 AJ242552	670118	+	BC018687|MACROD2|140733|MACRO domain containing 2##NM_001033087|MACROD2|140733|MACRO domain containing 2##AB040902|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AF169677|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC020870|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK027297|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK074883|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_013281|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_198391|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC101216|MACROD2|140733|MACRO domain containing 2##BC101217|MACROD2|140733|MACRO domain containing 2##BC101218|MACROD2|140733|MACRO domain containing 2##BC101219|MACROD2|140733|MACRO domain containing 2##BC126936|MACROD2|140733|MACRO domain containing 2##BC128036|MACROD2|140733|MACRO domain containing 2##EF159161|MACROD2|140733|MACRO domain containing 2##AK307399|KIF16B|55614|kinesin family member 16B##AB046810|KIF16B|55614|kinesin family member 16B##BC150261|KIF16B|55614|kinesin family member 16B##BX647572|KIF16B|55614|kinesin family member 16B##AK095322|KIF16B|55614|kinesin family member 16B##AY166853|KIF16B|55614|kinesin family member 16B##BC050577|KIF16B|55614|kinesin family member 16B##NM_001199865|KIF16B|55614|kinesin family member 16B##NM_001199866|KIF16B|55614|kinesin family member 16B##NM_024704|KIF16B|55614|kinesin family member 16B##NM_003092|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##NM_198220|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC018022|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC036737|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##AK313004|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC022311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC008311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##M15841|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC101688|OTOR|56914|otoraplin##BC101690|OTOR|56914|otoraplin##AF233261|OTOR|56914|otoraplin##NM_020157|OTOR|56914|otoraplin##AY359082|OTOR|56914|otoraplin##AF243505|OTOR|56914|otoraplin##AJ242552|OTOR|56914|otoraplin	0.0	0.0	
chr20	50121312	50121457	reg1003445.p1	4.609	+	BC006367 TSC_hg19_v1_chr20_-_49639664 BC046629 AK290689 NM_002237	-481727	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	-546016	+	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	-546321	-	EU887573 EU887578 AB590566 TSC_hg19_v1_chr20_-_50159239 BC136418 BC144074	37755	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	37891	-	EU887574 EU887577 NM_001136021	57783	-	BC006367|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC046629|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##AK290689|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##NM_002237|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##EU887573|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887578|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC136418|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC144074|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	0.012621	0.0	
chr2	122852181	122852350	reg1011818.p1	4.609	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-339028	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-357800	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-444620	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1930599	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	4561442	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	4561527	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.991988	0.0	denovo_WM_7:-40:0.783
chr7	2595699	2595826	reg1007242.p2	4.609	+	AK131083 TSC_hg19_v1_chr7_-_2595352 NM_152743	-397	-	TSC_hg19_v1_chr7_-_2595139 AK024482 BC015632	-634	-	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	-36325	+	TSC_hg19_v1_chr7_+_2598633 BC071858 NM_001100390 NM_152558	2865	+	TSC_hg19_v1_chr7_+_2598649 AK302053	2893	+	TSC_hg19_v1_chr7_+_2598682 AK309646 BC043150	2927	+	AK131083|BRAT1|221927|BRCA1-associated ATM activator 1##NM_152743|BRAT1|221927|BRCA1-associated ATM activator 1##AK024482|BRAT1|221927|BRCA1-associated ATM activator 1##BC015632|BRAT1|221927|BRCA1-associated ATM activator 1##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC071858|IQCE|23288|IQ motif containing E##NM_001100390|IQCE|23288|IQ motif containing E##NM_152558|IQCE|23288|IQ motif containing E##AK302053|IQCE|23288|IQ motif containing E##AK309646|IQCE|23288|IQ motif containing E##BC043150|IQCE|23288|IQ motif containing E	1.85423	0.0	denovo_WM_7:-26:0.808	denovo_WM_7:-41:0.808
chr7	6416580	6416661	reg1003323.p5	4.609	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	-2393	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-28110	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-104389	-	TSC_hg19_v1_chr7_-_6474593 AK298910	57970	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	70919	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	70988	-	NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta	0.0	0.0	
chr14	75093861	75093961	reg1011108.p1	4.608	+	TSC_hg19_v1_chr14_-_75078940 BC078659 Z37976 NM_000428 S82451	-15052	-	TSC_hg19_v1_chr14_+_74960467 AK290728 NM_194279 BC015771 BX248252 BC032893	-133453	+	TSC_hg19_v1_chr14_-_74960037 AK311931 BC002532 NM_006432	-133852	-	TSC_hg19_v1_chr14_-_75179784 AB002315 AK304217 AK296912 BX248747 BC032944 NM_001039479	85865	-	TSC_hg19_v1_chr14_+_75179883 NM_015962 AK290666 BC022361 AK021636 BC080600 BX248271	85964	+	TSC_hg19_v1_chr14_+_75230066 AK095760 NM_019589	136121	+	BC078659|LTBP2|4053|latent transforming growth factor beta binding protein 2##Z37976|LTBP2|4053|latent transforming growth factor beta binding protein 2##NM_000428|LTBP2|4053|latent transforming growth factor beta binding protein 2##S82451|LTBP2|4053|latent transforming growth factor beta binding protein 2##AK290728|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##NM_194279|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BC015771|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BX248252|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##BC032893|ISCA2|122961|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)##AK311931|NPC2|10577|Niemann-Pick disease, type C2##BC002532|NPC2|10577|Niemann-Pick disease, type C2##NM_006432|NPC2|10577|Niemann-Pick disease, type C2##AB002315|KIAA0317|9870|KIAA0317##AK304217|KIAA0317|9870|KIAA0317##AK296912|KIAA0317|9870|KIAA0317##BX248747|KIAA0317|9870|KIAA0317##BC032944|KIAA0317|9870|KIAA0317##NM_001039479|KIAA0317|9870|KIAA0317##NM_015962|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK290666|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC022361|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK021636|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC080600|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BX248271|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK095760|YLPM1|56252|YLP motif containing 1##NM_019589|YLPM1|56252|YLP motif containing 1	0.996253	0.0	denovo_WM_7:-45:0.826
chr17	27125493	27125641	reg1012889.p1	4.608	+	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	-54498	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	-69753	+	NM_001160407	-71619	-	TSC_hg19_v1_chr17_-_27139467 AK095569	13880	-	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	44223	-	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	56456	+	NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_001160407|TLCD1|116238|TLC domain containing 1##AK095569|C17orf63|55731|chromosome 17 open reading frame 63##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63##AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)	0.996068	0.0	denovo_WM_7:96:0.889
chr17	29605421	29605533	reg1010753.p1	4.608	+	TSC_hg19_v1_chr17_+_29421994 AK289936 M82814 M89914 BC144643 D42072	-183368	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	-183533	+	TSC_hg19_v1_chr17_+_29298062 AK226030 BC082262 AK312979 AK122646 AK122709 AB470605 AY598332	-307337	+	X51694 BC018050 AK222663 AK312445 NM_002544	18837	-	AK312822 TSC_hg19_v1_chr17_-_29641073	35594	-	TSC_hg19_v1_chr17_-_29641092 BC005926	35612	-	AK289936|NF1|4763|neurofibromin 1##M82814|NF1|4763|neurofibromin 1##M89914|NF1|4763|neurofibromin 1##BC144643|NF1|4763|neurofibromin 1##D42072|NF1|4763|neurofibromin 1##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1##AK226030|RNF135|84282|ring finger protein 135##BC082262|RNF135|84282|ring finger protein 135##AK312979|RNF135|84282|ring finger protein 135##AK122646|RNF135|84282|ring finger protein 135##AK122709|RNF135|84282|ring finger protein 135##AB470605|RNF135|84282|ring finger protein 135##AY598332|RNF135|84282|ring finger protein 135##X51694|OMG|4974|oligodendrocyte myelin glycoprotein##BC018050|OMG|4974|oligodendrocyte myelin glycoprotein##AK222663|OMG|4974|oligodendrocyte myelin glycoprotein##AK312445|OMG|4974|oligodendrocyte myelin glycoprotein##NM_002544|OMG|4974|oligodendrocyte myelin glycoprotein##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B	2.990725	0.0	
chr2	8711581	8711721	reg1012264.p2	4.608	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1654064	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1693788	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1704948	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	110552	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	266068	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	432170	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr10	112591297	112591390	reg1005438.p1	4.607	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-187214	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-247228	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-263851	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	40269	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	40371	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	87353	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	1.409249	0.0	
chr12	56221019	56221199	reg1007855.p2	4.607	+	TSC_hg19_v1_chr12_+_56211873 AK223180	-9239	+	AF395707 NM_014182 TSC_hg19_v1_chr12_+_56211824 AK314046 AF173375 AF161509	-9322	+	TSC_hg19_v1_chr12_-_56211511 NM_033082	-9576	-	AK057354 BC117146 BC117148 TSC_hg19_v1_chr12_-_56223333 BC050271 AY188447 EF560741	2164	-	TSC_hg19_v1_chr12_-_56223400 NM_032364	2308	-	AK095340 TSC_hg19_v1_chr12_+_56223576	2443	+	AK223180|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF395707|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_014182|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AK314046|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF173375|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##AF161509|ORMDL2|29095|ORM1-like 2 (S. cerevisiae)##NM_033082|SARNP|84324|SAP domain containing ribonucleoprotein##AK057354|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117146|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##BC117148|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AY188447|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##EF560741|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##NM_032364|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AK095340|TMEM198B|440104|transmembrane protein 198B, pseudogene	0.0	0.0	
chr15	41153833	41153972	reg1002970.p2	4.607	+	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-17201	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-17552	+	AK000258 BC096716 BC098124 BC098150 BC098341 NM_001130143 NM_017726	-32997	-	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	12545	-	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	32798	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	67796	+	NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK000258|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC096716|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098124|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098150|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098341|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_001130143|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_017726|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)	0.999229	0.0	denovo_WM_7:16:0.594	denovo_WM_7:17:0.230
chr20	43919667	43919752	reg1013191.p1	4.607	+	AF114471 X04503 AB464192 DQ891365 DQ894545 AK312192 X04470 TSC_hg19_v1_chr20_-_43883206 AX772818 BC020708 NM_003064	-36514	-	BC005262 M81652 NM_003008 AK312932 AX772816 BC056675 BC070306 AB464703	-69690	+	NM_003007 AK291811 BC005229 BC007096 BC011442 BC055416 J04440 AB591040 BT007177 CU691118	-84044	+	NM_014276 AB024964 AB026048 AB027710	15817	+	BC151219 AK074595 BC141811 AK074597 NM_003833 NM_030590 NM_030592	17233	-	CR542045 CR542074 DQ890718 DQ893898 AB464261 TSC_hg19_v1_chr20_-_43977065 X67016 AK222695 AK223243 AK303964 AK312507 BC030805 D13292 NM_002999	57346	-	AF114471|SLPI|6590|secretory leukocyte peptidase inhibitor##X04503|SLPI|6590|secretory leukocyte peptidase inhibitor##DQ891365|SLPI|6590|secretory leukocyte peptidase inhibitor##DQ894545|SLPI|6590|secretory leukocyte peptidase inhibitor##AK312192|SLPI|6590|secretory leukocyte peptidase inhibitor##X04470|SLPI|6590|secretory leukocyte peptidase inhibitor##AX772818|SLPI|6590|secretory leukocyte peptidase inhibitor##BC020708|SLPI|6590|secretory leukocyte peptidase inhibitor##NM_003064|SLPI|6590|secretory leukocyte peptidase inhibitor##BC005262|SEMG2|6407|semenogelin II##M81652|SEMG2|6407|semenogelin II##NM_003008|SEMG2|6407|semenogelin II##AK312932|SEMG2|6407|semenogelin II##BC056675|SEMG2|6407|semenogelin II##BC070306|SEMG2|6407|semenogelin II##NM_003007|SEMG1|6406|semenogelin I##BC005229|SEMG1|6406|semenogelin I##BC007096|SEMG1|6406|semenogelin I##BC011442|SEMG1|6406|semenogelin I##BC055416|SEMG1|6406|semenogelin I##J04440|SEMG1|6406|semenogelin I##BT007177|SEMG1|6406|semenogelin I##NM_014276|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB024964|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB026048|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##AB027710|RBPJL|11317|recombination signal binding protein for immunoglobulin kappa J region-like##BC151219|MATN4|8785|matrilin 4##AK074595|MATN4|8785|matrilin 4##BC141811|MATN4|8785|matrilin 4##AK074597|MATN4|8785|matrilin 4##NM_003833|MATN4|8785|matrilin 4##NM_030590|MATN4|8785|matrilin 4##NM_030592|MATN4|8785|matrilin 4##CR542045|SDC4|6385|syndecan 4##CR542074|SDC4|6385|syndecan 4##DQ890718|SDC4|6385|syndecan 4##DQ893898|SDC4|6385|syndecan 4##X67016|SDC4|6385|syndecan 4##AK222695|SDC4|6385|syndecan 4##AK223243|SDC4|6385|syndecan 4##AK303964|SDC4|6385|syndecan 4##AK312507|SDC4|6385|syndecan 4##BC030805|SDC4|6385|syndecan 4##D13292|SDC4|6385|syndecan 4##NM_002999|SDC4|6385|syndecan 4	0.0	0.950476	CTCF.p2:4:0.950
chr22	21281445	21281529	reg1009560.p2	4.607	+	TSC_hg19_v1_chr22_+_21271940 CR456423	-9484	+	TSC_hg19_v1_chr22_+_21271756 BC043500	-9656	+	BC026248 TSC_hg19_v1_chr22_+_21271721	-9766	+	NM_001018060 NM_144704 AK055035 TSC_hg19_v1_chr22_+_21319447 BC032485	37948	+	NM_001146288 AK094844 TSC_hg19_v1_chr22_+_21321550 AK295581 AK316042	40012	+	AY927574 TSC_hg19_v1_chr22_+_21330441	48917	+	CR456423|CRKL|1399|v-crk sarcoma virus CT10 oncogene homolog (avian)-like##BC043500|CRKL|1399|v-crk sarcoma virus CT10 oncogene homolog (avian)-like##BC026248|CRKL|1399|v-crk sarcoma virus CT10 oncogene homolog (avian)-like##NM_001018060|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##NM_144704|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK055035|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##BC032485|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##NM_001146288|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK094844|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK295581|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AK316042|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3##AY927574|AIFM3|150209|apoptosis-inducing factor, mitochondrion-associated, 3	2.098667	0.0	denovo_WM_7:1:0.248	denovo_WM_7:2:0.248	denovo_WM_7:3:0.248	denovo_WM_7:4:0.248
chr22	30504763	30504902	reg1009775.p1	4.607	+	BC030013 NM_152510	-28380	+	BC142713 TSC_hg19_v1_chr22_+_30279201 AB002369 BC152455	-225571	+	TSC_hg19_v1_chr22_+_30279167 BC151217 AK289581 NM_021090 NM_153050 NM_153051	-225703	+	AB527710 X13967 BC093733 BC093735 BC143305 BC069540 TSC_hg19_v1_chr22_-_30642749 AK315310 NM_002309	137907	-	CR541703 AB463155 CU013134 CU013422 DQ892537 DQ895748 CR456534 BC011589 NM_020530 TSC_hg19_v1_chr22_-_30662841	157983	-	CU013000 CU013288 CU692418 AB528172 BC021927 AK309436 AK055587 TSC_hg19_v1_chr22_-_30685566 CR456449 AK310246 NM_001037666	180718	-	BC030013|HORMAD2|150280|HORMA domain containing 2##NM_152510|HORMAD2|150280|HORMA domain containing 2##BC142713|MTMR3|8897|myotubularin related protein 3##AB002369|MTMR3|8897|myotubularin related protein 3##BC152455|MTMR3|8897|myotubularin related protein 3##BC151217|MTMR3|8897|myotubularin related protein 3##AK289581|MTMR3|8897|myotubularin related protein 3##NM_021090|MTMR3|8897|myotubularin related protein 3##NM_153050|MTMR3|8897|myotubularin related protein 3##NM_153051|MTMR3|8897|myotubularin related protein 3##X13967|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC093733|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC093735|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC143305|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##BC069540|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##AK315310|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##NM_002309|LIF|3976|leukemia inhibitory factor (cholinergic differentiation factor)##CR541703|OSM|5008|oncostatin M##CU013134|OSM|5008|oncostatin M##CU013422|OSM|5008|oncostatin M##DQ892537|OSM|5008|oncostatin M##DQ895748|OSM|5008|oncostatin M##CR456534|OSM|5008|oncostatin M##BC011589|OSM|5008|oncostatin M##NM_020530|OSM|5008|oncostatin M##CU013000|GATSL3|652968|GATS protein-like 3##CU013288|GATSL3|652968|GATS protein-like 3##BC021927|GATSL3|652968|GATS protein-like 3##AK309436|GATSL3|652968|GATS protein-like 3##AK055587|GATSL3|652968|GATS protein-like 3##CR456449|GATSL3|652968|GATS protein-like 3##AK310246|GATSL3|652968|GATS protein-like 3##NM_001037666|GATSL3|652968|GATS protein-like 3	0.835354	0.0	denovo_WM_7:48:0.414	denovo_WM_7:49:0.338
chr6	42898946	42899126	reg1013506.p1	4.607	+	TSC_hg19_v1_chr6_+_42897237 BC008898 BC008961 AB527945 EU446764	-1765	+	TSC_hg19_v1_chr6_+_42897217 BC008133	-1827	+	NM_006586 BC004423 U80744 BC011767 AY358960	-2116	+	TSC_hg19_v1_chr6_+_42928491 BC032627 NM_018960 AF101477 AB590322 DQ890819 DQ893974	29448	+	AB051076 AB051077 AB051078 AB590555 BC033487 TSC_hg19_v1_chr6_-_42946920 BC048331 AK314237 AK225704	47873	-	AB208906 TSC_hg19_v1_chr6_-_42946954 D83703 NM_000287	47925	-	BC008898|CNPY3|10695|canopy 3 homolog (zebrafish)##BC008961|CNPY3|10695|canopy 3 homolog (zebrafish)##EU446764|CNPY3|10695|canopy 3 homolog (zebrafish)##BC008133|CNPY3|10695|canopy 3 homolog (zebrafish)##NM_006586|CNPY3|10695|canopy 3 homolog (zebrafish)##BC004423|CNPY3|10695|canopy 3 homolog (zebrafish)##U80744|CNPY3|10695|canopy 3 homolog (zebrafish)##BC011767|CNPY3|10695|canopy 3 homolog (zebrafish)##AY358960|CNPY3|10695|canopy 3 homolog (zebrafish)##BC032627|GNMT|27232|glycine N-methyltransferase##NM_018960|GNMT|27232|glycine N-methyltransferase##AF101477|GNMT|27232|glycine N-methyltransferase##DQ890819|GNMT|27232|glycine N-methyltransferase##DQ893974|GNMT|27232|glycine N-methyltransferase##AB051076|PEX6|5190|peroxisomal biogenesis factor 6##AB051077|PEX6|5190|peroxisomal biogenesis factor 6##AB051078|PEX6|5190|peroxisomal biogenesis factor 6##BC033487|PEX6|5190|peroxisomal biogenesis factor 6##BC048331|PEX6|5190|peroxisomal biogenesis factor 6##AK314237|PEX6|5190|peroxisomal biogenesis factor 6##AK225704|PEX6|5190|peroxisomal biogenesis factor 6##AB208906|PEX6|5190|peroxisomal biogenesis factor 6##D83703|PEX6|5190|peroxisomal biogenesis factor 6##NM_000287|PEX6|5190|peroxisomal biogenesis factor 6	1.996652	0.0	denovo_WM_7:-61:0.457	denovo_WM_7:-62:0.457	denovo_WM_7:86:0.951
chr1	181093829	181093952	reg1009762.p2	4.606	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-36025	+	NM_016545	-36253	+	CU680340 TSC_hg19_v1_chr1_+_181003143 AF031469 AF010447	-90740	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	358810	+	BC137223 BC137224 AK128654 NM_001009992	936907	-	TSC_hg19_v1_chr1_-_182354649 AK301600	1260792	-	BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##AF031469|MR1|3140|major histocompatibility complex, class I-related##AF010447|MR1|3140|major histocompatibility complex, class I-related##NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase	1.068926	0.0	
chr1	211362280	211362387	reg1011187.p1	4.606	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	-54948	-	NM_001170580 BC051191	-859692	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-860068	+	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	70375	+	TSC_hg19_v1_chr1_+_211432726 AK131312	70394	+	TSC_hg19_v1_chr1_+_211432740 AK300942 AK302664	70420	+	AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3##AK300942|RCOR3|55758|REST corepressor 3##AK302664|RCOR3|55758|REST corepressor 3	0.997156	0.0	denovo_WM_7:19:0.378	denovo_WM_7:20:0.376	denovo_WM_7:21:0.216
chr14	61899681	61899861	reg1011999.p1	4.606	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-111244	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-151249	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-151577	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	262419	+	FJ790247 NM_001243084	264568	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	329348	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.996156	0.0	denovo_WM_7:0:0.249	denovo_WM_7:0:0.249	denovo_WM_7:-1:0.249	denovo_WM_7:1:0.249
chr16	21409143	21409301	reg1012432.p2	4.606	+	BX648477 NM_001014444 NM_001888	-94835	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-119574	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-119629	-	BC036263 NM_130464	27435	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	122530	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	201668	+	BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9	0.994923	0.0	denovo_WM_7:-15:0.332	denovo_WM_7:-16:0.332	denovo_WM_7:-17:0.332
chr17	7036873	7036971	reg1006477.p3	4.606	+	X55283 TSC_hg19_v1_chr17_-_7018083 BC017251 NM_001181 NM_001201352 NM_080912 NM_080913 AK310123 AK303787	-18752	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	-18933	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	-19329	-	BC032130 TSC_hg19_v1_chr17_-_7082568	45642	-	M10058 AB070933 TSC_hg19_v1_chr17_-_7082680 AK308375 AK124286 NM_001197216 NM_001671	45846	-	TSC_hg19_v1_chr17_-_7106561 BC040533	69672	-	X55283|ASGR2|433|asialoglycoprotein receptor 2##BC017251|ASGR2|433|asialoglycoprotein receptor 2##NM_001181|ASGR2|433|asialoglycoprotein receptor 2##NM_001201352|ASGR2|433|asialoglycoprotein receptor 2##NM_080912|ASGR2|433|asialoglycoprotein receptor 2##NM_080913|ASGR2|433|asialoglycoprotein receptor 2##AK310123|ASGR2|433|asialoglycoprotein receptor 2##AK303787|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##BC032130|ASGR1|432|asialoglycoprotein receptor 1##M10058|ASGR1|432|asialoglycoprotein receptor 1##AB070933|ASGR1|432|asialoglycoprotein receptor 1##AK308375|ASGR1|432|asialoglycoprotein receptor 1##AK124286|ASGR1|432|asialoglycoprotein receptor 1##NM_001197216|ASGR1|432|asialoglycoprotein receptor 1##NM_001671|ASGR1|432|asialoglycoprotein receptor 1##BC040533|DLG4|1742|discs, large homolog 4 (Drosophila)	0.0	0.017469	
chr17	75407198	75407315	reg1006859.p1	4.606	+	AB023208 NM_001113494 AJ312322	-35087	+	TSC_hg19_v1_chr17_+_75369418 AK304143	-37831	+	TSC_hg19_v1_chr17_+_75369236 AJ312319 NM_001113493	-38003	+	NM_001113496 TSC_hg19_v1_chr17_+_75446637	39389	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	39526	+	AK299828 TSC_hg19_v1_chr17_+_75447450	40133	+	AB023208|SEPT9|10801|septin 9##NM_001113494|SEPT9|10801|septin 9##AJ312322|SEPT9|10801|septin 9##AK304143|SEPT9|10801|septin 9##AJ312319|SEPT9|10801|septin 9##NM_001113493|SEPT9|10801|septin 9##NM_001113496|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9	0.992653	0.0	denovo_WM_7:-79:0.715	denovo_WM_7:-80:0.277
chr8	130561221	130561401	reg1012821.p1	4.606	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-1754528	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-1812821	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-1812986	+	AB042405 NM_031415	237822	-	BC003599 TSC_hg19_v1_chr8_-_130951934	390604	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	390695	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.206905	0.0	
chr1	26646078	26646258	reg1008223.p2	4.605	+	NM_145345 AK097368	-1364	-	TSC_hg19_v1_chr1_+_26644458 BC000644 X62466 X67699 BT007116 CR456874	-1685	+	TSC_hg19_v1_chr1_+_26644396 NM_001803 AK311554	-1768	+	AK000902 NM_001039775	34452	-	BC028731 BC029505 NM_001114759 NM_173574	53077	-	TSC_hg19_v1_chr1_+_26737262 BC028566 NM_024674	91083	+	NM_145345|UBXN11|91544|UBX domain protein 11##AK097368|UBXN11|91544|UBX domain protein 11##BC000644|CD52|1043|CD52 molecule##X62466|CD52|1043|CD52 molecule##X67699|CD52|1043|CD52 molecule##BT007116|CD52|1043|CD52 molecule##CR456874|CD52|1043|CD52 molecule##NM_001803|CD52|1043|CD52 molecule##AK000902|AIM1L|55057|absent in melanoma 1-like##NM_001039775|AIM1L|55057|absent in melanoma 1-like##BC028731|ZNF683|257101|zinc finger protein 683##BC029505|ZNF683|257101|zinc finger protein 683##NM_001114759|ZNF683|257101|zinc finger protein 683##NM_173574|ZNF683|257101|zinc finger protein 683##BC028566|LIN28A|79727|lin-28 homolog A (C. elegans)##NM_024674|LIN28A|79727|lin-28 homolog A (C. elegans)	0.0	0.0	
chr16	57402145	57402317	reg1013126.p2	4.605	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	-9521	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-83652	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-83720	-	AK222692 TSC_hg19_v1_chr16_+_57406382	4154	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	4208	+	BC069107 NM_002987 BC112066 BC112068	36464	+	NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC069107|CCL17|6361|chemokine (C-C motif) ligand 17##NM_002987|CCL17|6361|chemokine (C-C motif) ligand 17##BC112066|CCL17|6361|chemokine (C-C motif) ligand 17##BC112068|CCL17|6361|chemokine (C-C motif) ligand 17	0.83757	0.0	denovo_WM_7:-39:0.730
chr19	59049566	59049710	reg1012724.p2	4.605	+	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	-18450	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	-18685	-	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	-26261	-	TSC_hg19_v1_chr19_+_59055826 AK225760 BC004978 NM_005762 BC052986	6194	+	TSC_hg19_v1_chr19_+_59055881 U95040	6250	+	U78773 TSC_hg19_v1_chr19_+_59056118 AK313478 AB385179	6432	+	AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK225760|TRIM28|10155|tripartite motif containing 28##BC004978|TRIM28|10155|tripartite motif containing 28##NM_005762|TRIM28|10155|tripartite motif containing 28##BC052986|TRIM28|10155|tripartite motif containing 28##U95040|TRIM28|10155|tripartite motif containing 28##U78773|TRIM28|10155|tripartite motif containing 28##AK313478|TRIM28|10155|tripartite motif containing 28	1.975531	0.0	denovo_WM_7:-46:0.983	denovo_WM_7:-67:0.587	denovo_WM_7:-69:0.342
chr20	13299831	13299950	reg1010241.p2	4.605	+	NM_080826 TSC_hg19_v1_chr20_+_13202422	-97467	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-310249	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	-1401333	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	319674	-	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	465651	-	TSC_hg19_v1_chr20_+_13765698 NM_001039375 NM_024120 AK289781 AK091060 AX746757 BC073158 CU687252 BC005984	465863	+	NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_001039375|C20orf7|79133|chromosome 20 open reading frame 7##NM_024120|C20orf7|79133|chromosome 20 open reading frame 7##AK289781|C20orf7|79133|chromosome 20 open reading frame 7##AK091060|C20orf7|79133|chromosome 20 open reading frame 7##BC073158|C20orf7|79133|chromosome 20 open reading frame 7##BC005984|C20orf7|79133|chromosome 20 open reading frame 7	0.991273	0.0	denovo_WM_7:-15:0.489	denovo_WM_7:-17:0.239
chr3	72806176	72806355	reg1010348.p1	4.605	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-971994	-	AK313656 NM_173359	-1002342	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-1002743	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	91283	-	BC017274 TSC_hg19_v1_chr3_-_72897575	91310	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	91327	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.0	0.0	
chr6	28048607	28048751	reg1009222.p2	4.605	+	NM_003447	-198	+	BC109251 BC110457 NM_012367	-123661	+	BC136881 BC136901 NM_033057	-168506	-	AK025844 AK294017 AK309837 NM_025231 TSC_hg19_v1_chr6_+_28092406 BC004255	43720	+	TSC_hg19_v1_chr6_-_28104623 AK309286 BC043177	55919	-	TSC_hg19_v1_chr6_+_28109660 AB208793 BC096282 BC096283 BC096284 BC130032 NM_006298 U57796	61012	+	NM_003447|ZNF165|7718|zinc finger protein 165##BC109251|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##BC110457|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##NM_012367|OR2B6|26212|olfactory receptor, family 2, subfamily B, member 6##BC136881|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##BC136901|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##NM_033057|OR2B2|81697|olfactory receptor, family 2, subfamily B, member 2##AK025844|ZSCAN16|80345|zinc finger and SCAN domain containing 16##AK294017|ZSCAN16|80345|zinc finger and SCAN domain containing 16##AK309837|ZSCAN16|80345|zinc finger and SCAN domain containing 16##NM_025231|ZSCAN16|80345|zinc finger and SCAN domain containing 16##BC004255|ZSCAN16|80345|zinc finger and SCAN domain containing 16##AK309286|LOC100129195|100129195|uncharacterized LOC100129195##BC043177|LOC100129195|100129195|uncharacterized LOC100129195##AB208793|ZNF192|7745|zinc finger protein 192##BC096282|ZNF192|7745|zinc finger protein 192##BC096283|ZNF192|7745|zinc finger protein 192##BC096284|ZNF192|7745|zinc finger protein 192##BC130032|ZNF192|7745|zinc finger protein 192##NM_006298|ZNF192|7745|zinc finger protein 192##U57796|ZNF192|7745|zinc finger protein 192	0.0	0.0	
chr13	20436634	20436810	reg1011900.p2	4.604	+	TSC_hg19_v1_chr13_-_20357160 NM_001042414	-79578	-	AK001817 AK301554 TSC_hg19_v1_chr13_-_20357084	-79639	-	TSC_hg19_v1_chr13_-_20357070 BC014184	-79666	-	AK312724 BC007048 AJ133352 AJ133353 AJ133354 AJ133355 TSC_hg19_v1_chr13_-_20437745	958	-	TSC_hg19_v1_chr13_-_20437790 NM_001039649 NM_001039650 NM_001142684	1086	-	TSC_hg19_v1_chr13_+_20532834 BC036372 NM_003453 NM_197968 AL136621 NM_001190964 Y13472	96095	+	NM_001042414|PSPC1|55269|paraspeckle component 1##AK001817|PSPC1|55269|paraspeckle component 1##AK301554|PSPC1|55269|paraspeckle component 1##BC014184|PSPC1|55269|paraspeckle component 1##AK312724|ZMYM5|9205|zinc finger, MYM-type 5##BC007048|ZMYM5|9205|zinc finger, MYM-type 5##AJ133352|ZMYM5|9205|zinc finger, MYM-type 5##AJ133353|ZMYM5|9205|zinc finger, MYM-type 5##AJ133354|ZMYM5|9205|zinc finger, MYM-type 5##AJ133355|ZMYM5|9205|zinc finger, MYM-type 5##NM_001039649|ZMYM5|9205|zinc finger, MYM-type 5##NM_001039650|ZMYM5|9205|zinc finger, MYM-type 5##NM_001142684|ZMYM5|9205|zinc finger, MYM-type 5##BC036372|ZMYM2|7750|zinc finger, MYM-type 2##NM_003453|ZMYM2|7750|zinc finger, MYM-type 2##NM_197968|ZMYM2|7750|zinc finger, MYM-type 2##AL136621|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190964|ZMYM2|7750|zinc finger, MYM-type 2##Y13472|ZMYM2|7750|zinc finger, MYM-type 2	0.0	0.0	
chr15	72072654	72072822	reg1001426.p1	4.604	+	AK299056 AK303870 BX648716 TSC_hg19_v1_chr15_+_71839574 AY358143	-233158	+	NM_024817 BC140868	-638928	+	BC048128 AL080151 BC039359 NM_001102658 TSC_hg19_v1_chr15_-_71407943	-664867	-	AF121129 NM_014249 NM_016346 AF148128	30174	+	AK097557 NM_001166340	333860	+	NM_001172109 NM_001172110	336480	+	AK299056|THSD4|79875|thrombospondin, type I, domain containing 4##AK303870|THSD4|79875|thrombospondin, type I, domain containing 4##BX648716|THSD4|79875|thrombospondin, type I, domain containing 4##AY358143|THSD4|79875|thrombospondin, type I, domain containing 4##NM_024817|THSD4|79875|thrombospondin, type I, domain containing 4##BC140868|THSD4|79875|thrombospondin, type I, domain containing 4##BC048128|CT62|196993|cancer/testis antigen 62##AL080151|CT62|196993|cancer/testis antigen 62##BC039359|CT62|196993|cancer/testis antigen 62##NM_001102658|CT62|196993|cancer/testis antigen 62##AF121129|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_014249|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##NM_016346|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AF148128|NR2E3|10002|nuclear receptor subfamily 2, group E, member 3##AK097557|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001166340|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172109|SENP8|123228|SUMO/sentrin specific peptidase family member 8##NM_001172110|SENP8|123228|SUMO/sentrin specific peptidase family member 8	0.0	0.0	
chr19	1904448	1904562	reg1010210.p1	4.604	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-19001	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-19034	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-19060	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	847	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	900	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	36658	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	0.0	0.0	
chr19	46133793	46133914	reg1009253.p1	4.604	+	TSC_hg19_v1_chr19_-_46105467 BC038450 NM_005282 AK296429	-28399	-	AK290698 TSC_hg19_v1_chr19_-_46105429	-28430	-	TSC_hg19_v1_chr19_-_46088084 AK098798 NM_001017989 NM_025136	-45749	-	AL096717 TSC_hg19_v1_chr19_-_46142656 BC032630 AK026616 AK308403 AK304299 AK225043	8798	-	TSC_hg19_v1_chr19_-_46142667 AF103939 NM_012155	8821	-	NM_001242348 BC007358	11073	+	BC038450|GPR4|2828|G protein-coupled receptor 4##NM_005282|GPR4|2828|G protein-coupled receptor 4##AK290698|GPR4|2828|G protein-coupled receptor 4##AK098798|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_001017989|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_025136|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AL096717|EML2|24139|echinoderm microtubule associated protein like 2##BC032630|EML2|24139|echinoderm microtubule associated protein like 2##AK026616|EML2|24139|echinoderm microtubule associated protein like 2##AK308403|EML2|24139|echinoderm microtubule associated protein like 2##AK304299|EML2|24139|echinoderm microtubule associated protein like 2##AK225043|EML2|24139|echinoderm microtubule associated protein like 2##AF103939|EML2|24139|echinoderm microtubule associated protein like 2##NM_012155|EML2|24139|echinoderm microtubule associated protein like 2##NM_001242348|LOC100287177|100287177|uncharacterized LOC100287177##BC007358|LOC100287177|100287177|uncharacterized LOC100287177	0.99911	0.0	denovo_WM_7:-34:0.310	denovo_WM_7:-35:0.310	denovo_WM_7:-36:0.310
chr13	33671099	33671191	reg1005690.p1	4.603	+	TSC_hg19_v1_chr13_+_33590478 AB005142 NM_004795	-80622	+	TSC_hg19_v1_chr13_+_33160686 BC039256 U95825 BC070274 AK299340	-510462	+	TSC_hg19_v1_chr13_+_33160649 AB023196	-510506	+	AY082590 BC046563 NM_001243466 NM_178007	89070	-	AL049801 AY082591 AK091804 NM_001243474 NM_052851	109019	-	AY366448 AY082589 AY082592 AK312888 AK308430 NM_178006	188722	-	AB005142|KL|9365|klotho##NM_004795|KL|9365|klotho##BC039256|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##U95825|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##BC070274|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AK299340|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AB023196|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)##AY082590|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##BC046563|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243466|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178007|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AL049801|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082591|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK091804|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_001243474|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_052851|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY366448|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082589|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AY082592|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK312888|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##AK308430|STARD13|90627|StAR-related lipid transfer (START) domain containing 13##NM_178006|STARD13|90627|StAR-related lipid transfer (START) domain containing 13	0.769955	0.0	denovo_WM_7:44:0.696
chr13	47231078	47231233	reg1004060.p1	4.603	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-103648	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-103735	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-103832	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	140160	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	239912	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1344296	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.0	0.0	
chr16	81856371	81856514	reg1000866.p3	4.603	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-43512	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-43540	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-43545	+	BC019670 AK315652 AK026740 NM_145168	188626	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	212419	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	212490	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.984061	0.0	
chr22	41603234	41603414	reg1010408.p2	4.603	+	AK097052 TSC_hg19_v1_chr22_+_41601315 AL136564 NM_031488 AK056443 AK307763 BC017191 AK074091 AJ305226 AJ305227 CR456482 AB463092 AM392807 AM393641 CU013032 CU013320 CU677853 DQ892312 DQ895512	-1999	+	TSC_hg19_v1_chr22_-_41593483 BC040700	-9835	-	TSC_hg19_v1_chr22_+_41488610 NM_001429 BC053889	-114698	+	TSC_hg19_v1_chr22_-_41634074 BC048421	30777	-	BC102006 BC040188 TSC_hg19_v1_chr22_-_41636899 BC068590 NM_138481	33570	-	BC014044 TSC_hg19_v1_chr22_-_41682182	78852	-	AK097052|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AL136564|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##NM_031488|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK056443|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK307763|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##BC017191|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK074091|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AJ305226|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AJ305227|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CR456482|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AM392807|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AM393641|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CU013032|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CU013320|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##DQ892312|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##DQ895512|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##NM_001429|EP300|2033|E1A binding protein p300##BC053889|EP300|2033|E1A binding protein p300##BC048421|CHADL|150356|chondroadherin-like##BC040188|CHADL|150356|chondroadherin-like##BC068590|CHADL|150356|chondroadherin-like##NM_138481|CHADL|150356|chondroadherin-like##BC014044|RANGAP1|5905|Ran GTPase activating protein 1	0.998951	0.0	
chr4	71861862	71861994	reg1011033.p2	4.603	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	-2457	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	-2621	+	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	-93815	+	TSC_hg19_v1_chr4_+_72052481 AF011390 NM_001098484 NM_001134742 AK307594 AF157492	190795	+	AF069510 AB470072 AF053753 AF053754 AF310248 EF531618 TSC_hg19_v1_chr4_+_72102322	240358	+	BC030977 NM_003759 AF007216 AK308038 CU689062	342939	+	M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##AF011390|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001098484|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001134742|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK307594|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF157492|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF069510|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AB470072|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF053753|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF053754|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF310248|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##EF531618|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##BC030977|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_003759|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF007216|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK308038|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	0.997238	0.0	denovo_WM_7:1:0.841
chr6	106565517	106565659	reg1010406.p1	4.603	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	-18784	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	-31353	+	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	-31392	+	BC002699 TSC_hg19_v1_chr6_-_106773313	207720	-	TSC_hg19_v1_chr6_-_106773534 BX537904 AK315800	207944	-	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	208075	-	AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##BC002699|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BX537904|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK315800|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)	0.990308	0.0	denovo_WM_7:-22:0.814
chr6	155036686	155036796	reg1008941.p1	4.603	+	D28359 TSC_hg19_v1_chr6_+_154897429	-139311	+	TSC_hg19_v1_chr6_-_154831788 AK055911	-204939	-	TSC_hg19_v1_chr6_-_154831721 AY328891 AY328892 AY328893 NM_173515	-205006	-	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	17784	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	17813	+	TSC_hg19_v1_chr6_+_155054812 AB029039	18084	+	AK055911|CNKSR3|154043|CNKSR family member 3##AY328891|CNKSR3|154043|CNKSR family member 3##AY328892|CNKSR3|154043|CNKSR family member 3##AY328893|CNKSR3|154043|CNKSR family member 3##NM_173515|CNKSR3|154043|CNKSR family member 3##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##AB029039|SCAF8|22828|SR-related CTD-associated factor 8	1.90343	0.0	denovo_WM_7:11:0.467	denovo_WM_7:12:0.226	denovo_WM_7:29:0.990
chr1	206954752	206954903	reg1011800.p1	4.602	+	AF043333 AY029171 CR541993 CR542028 AB587432 M57627 BC104252 BC104253 BC022315 NM_000572 EU751618 EU751619	-8948	-	TSC_hg19_v1_chr1_+_206858308 BC036060 NM_004759 NM_032960 BC052584 AB590627 X75346	-96356	+	AB529015 BC037269 AF327561 TSC_hg19_v1_chr1_+_206809124 AF186774	-145717	+	AY040367 NM_153758 AB463800	17399	+	AF453946 NM_013371	47394	+	AF224266 NM_018724 BC117386 BC117390 BC074948 BC074949 AB590628 AY876922 BC069311 BC069364 BC069398 BC069425 BC069449 BC069487 BC069523 BC069559 CU686884 HQ258739	84348	+	AF043333|IL10|3586|interleukin 10##AY029171|IL10|3586|interleukin 10##CR541993|IL10|3586|interleukin 10##CR542028|IL10|3586|interleukin 10##M57627|IL10|3586|interleukin 10##BC104252|IL10|3586|interleukin 10##BC104253|IL10|3586|interleukin 10##BC022315|IL10|3586|interleukin 10##NM_000572|IL10|3586|interleukin 10##BC036060|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_004759|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_032960|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC052584|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##X75346|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC037269|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF327561|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AF186774|DYRK3|8444|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3##AY040367|IL19|29949|interleukin 19##NM_153758|IL19|29949|interleukin 19##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19##AF224266|IL20|50604|interleukin 20##NM_018724|IL20|50604|interleukin 20##BC117386|IL20|50604|interleukin 20##BC117390|IL20|50604|interleukin 20##BC074948|IL20|50604|interleukin 20##BC074949|IL20|50604|interleukin 20##AY876922|IL20|50604|interleukin 20##BC069311|IL20|50604|interleukin 20##BC069364|IL20|50604|interleukin 20##BC069398|IL20|50604|interleukin 20##BC069425|IL20|50604|interleukin 20##BC069449|IL20|50604|interleukin 20##BC069487|IL20|50604|interleukin 20##BC069523|IL20|50604|interleukin 20##BC069559|IL20|50604|interleukin 20##HQ258739|IL20|50604|interleukin 20	2.336001	0.0	denovo_WM_7:-29:0.343	denovo_WM_7:-44:0.307	denovo_WM_7:-59:0.403
chr1	235151666	235151838	reg1004121.p2	4.602	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-255978	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-406506	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-407894	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	140337	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	140479	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	172811	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr14	34544438	34544618	reg1004177.p2	4.602	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-124379	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1136038	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1745992	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	386959	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	464357	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	554827	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.0	0.0	
chr14	67005956	67006072	reg1009289.p1	4.602	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-30789	+	TSC_hg19_v1_chr14_+_66974870 AK315569	-31145	+	TSC_hg19_v1_chr14_+_66974859 AK025169	-31161	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	650129	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	702149	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	820552	-	AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	0.0	0.0	
chr18	33336583	33336728	reg1013965.p2	4.602	+	NM_020474 BC047746 U41514 AB529022 X85018	-102076	+	AK095502 AK300660 BC039404 NM_001098817 NM_194281	-258730	-	BC130288 BC136314 AF492004 AF533251 AK055775 NM_145756	-379362	-	NM_001201474 NM_001201475 NM_001201476 NM_031446 BC108730 TSC_hg19_v1_chr18_+_33552656 BC119765 BC119766 AK311536 AF277182 AF277189 BC025950	216012	+	TSC_hg19_v1_chr18_-_33647515 DQ892910 EU176720 AF419845 NM_018170 BC000225 AK314569	310772	-	BC010136 TSC_hg19_v1_chr18_-_33647520	310864	-	NM_020474|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##BC047746|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##U41514|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##X85018|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##AK095502|INO80C|125476|INO80 complex subunit C##AK300660|INO80C|125476|INO80 complex subunit C##BC039404|INO80C|125476|INO80 complex subunit C##NM_001098817|INO80C|125476|INO80 complex subunit C##NM_194281|INO80C|125476|INO80 complex subunit C##BC130288|ZNF396|252884|zinc finger protein 396##BC136314|ZNF396|252884|zinc finger protein 396##AF492004|ZNF396|252884|zinc finger protein 396##AF533251|ZNF396|252884|zinc finger protein 396##AK055775|ZNF396|252884|zinc finger protein 396##NM_145756|ZNF396|252884|zinc finger protein 396##NM_001201474|C18orf21|83608|chromosome 18 open reading frame 21##NM_001201475|C18orf21|83608|chromosome 18 open reading frame 21##NM_001201476|C18orf21|83608|chromosome 18 open reading frame 21##NM_031446|C18orf21|83608|chromosome 18 open reading frame 21##BC108730|C18orf21|83608|chromosome 18 open reading frame 21##BC119765|C18orf21|83608|chromosome 18 open reading frame 21##BC119766|C18orf21|83608|chromosome 18 open reading frame 21##AF277182|C18orf21|83608|chromosome 18 open reading frame 21##AF277189|C18orf21|83608|chromosome 18 open reading frame 21##BC025950|C18orf21|83608|chromosome 18 open reading frame 21##DQ892910|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##EU176720|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##AF419845|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##NM_018170|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##BC000225|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##AK314569|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A##BC010136|RPRD1A|55197|regulation of nuclear pre-mRNA domain containing 1A	0.082699	0.994461	CTCF.p2:5:0.994
chr3	195840365	195840474	reg1011559.p1	4.602	+	TSC_hg19_v1_chr3_-_195808999 NM_001128148	-31403	-	TSC_hg19_v1_chr3_-_195808984 M11507	-31436	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	-31458	-	BC034801 BC022078 NM_001039617 AK122907	97862	-	AK172837 NM_152672 TSC_hg19_v1_chr3_+_195943404 AK300996	102975	+	L28957 TSC_hg19_v1_chr3_-_196014549 AK309300 AK313450	174116	-	NM_001128148|TFRC|7037|transferrin receptor (p90, CD71)##M11507|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)##BC034801|ZDHHC19|131540|zinc finger, DHHC-type containing 19##BC022078|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001039617|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK122907|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK172837|OSTalpha|200931|organic solute transporter alpha##NM_152672|OSTalpha|200931|organic solute transporter alpha##AK300996|OSTalpha|200931|organic solute transporter alpha##L28957|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309300|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK313450|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha	0.989634	0.0	denovo_WM_7:54:0.713
chr5	80580781	80580927	reg1010843.p2	4.602	+	NM_001099735 NM_001099736 NM_001825 TSC_hg19_v1_chr5_+_80529140 AK313293 BC029140 AK122769	-51706	+	AF023130 AF181250 TSC_hg19_v1_chr5_+_80256561	-324295	+	TSC_hg19_v1_chr5_+_80256463 BC126112 BC136296 BC143870 NM_006909	-324372	+	TSC_hg19_v1_chr5_-_80597338 AK096014	16471	-	AK092460 TSC_hg19_v1_chr5_-_80597373 AK096680	16518	-	NM_001131035 NM_001131036 NM_032280 AL512712 TSC_hg19_v1_chr5_+_80597439 BC032736 AK314160 BC022799 BC014841	16585	+	NM_001099735|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##NM_001099736|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##NM_001825|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK313293|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##BC029140|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AK122769|CKMT2|1160|creatine kinase, mitochondrial 2 (sarcomeric)##AF023130|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##AF181250|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC126112|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC136296|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##BC143870|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##NM_006909|RASGRF2|5924|Ras protein-specific guanine nucleotide-releasing factor 2##AK096014|LOC100131067|100131067|uncharacterized LOC100131067##AK092460|LOC100131067|100131067|uncharacterized LOC100131067##AK096680|LOC100131067|100131067|uncharacterized LOC100131067##NM_001131035|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_001131036|ZCCHC9|84240|zinc finger, CCHC domain containing 9##NM_032280|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AL512712|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC032736|ZCCHC9|84240|zinc finger, CCHC domain containing 9##AK314160|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC022799|ZCCHC9|84240|zinc finger, CCHC domain containing 9##BC014841|ZCCHC9|84240|zinc finger, CCHC domain containing 9	1.235468	0.0	denovo_WM_7:71:0.898
chr7	44826554	44826690	reg1010415.p2	4.602	+	NM_174929 BC131780 BC016968 AY426594 AF357908	-30805	+	TSC_hg19_v1_chr7_+_44788465 AK090415 NM_031449	-38131	+	TSC_hg19_v1_chr7_+_44788175 BC110435	-38440	+	TSC_hg19_v1_chr7_+_44836244 BC137057 BC137058 NM_021130	9595	+	TSC_hg19_v1_chr7_+_44836279 AK290851 BC005982 AK130101 AK293003 BC007104 BC013915 AK026569 AK297340 AK316564 BC093076 AK290085 BC005320 D28351 BC106030 BC073992 BC003026 BC000689	9665	+	Y00052 TSC_hg19_v1_chr7_+_44836309 AB464007 DQ892625 DQ895865 CU674338 AB451307 AB451438 CR456707	9694	+	NM_174929|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC131780|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC016968|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AY426594|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AF357908|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AK090415|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_031449|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC110435|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC137057|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC137058|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##NM_021130|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK290851|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC005982|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK130101|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK293003|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC007104|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC013915|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK026569|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK297340|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK316564|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC093076|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AK290085|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC005320|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##D28351|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC106030|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC073992|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC003026|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##BC000689|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##Y00052|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##DQ892625|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##DQ895865|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AB451307|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##AB451438|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)##CR456707|PPIA|5478|peptidylprolyl isomerase A (cyclophilin A)	0.384694	0.010617	
chr12	8876327	8876461	reg1015948.p1	4.601	+	TSC_hg19_v1_chr12_+_8850570 AK302847 NM_020734 BC006368	-25790	+	AK124368 TSC_hg19_v1_chr12_-_8815486	-60912	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	-60993	-	NM_144670 AK122624 AK290355 AL832139 BX648231	98788	+	TSC_hg19_v1_chr12_+_9067153 AB209063 AK293893 NM_004426 BC073964 U89277 BC157850	190875	+	TSC_hg19_v1_chr12_-_9102242 AK291143 M16985 AK222792 BC024206 AK312689	225824	-	AK302847|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_020734|RIMKLB|57494|ribosomal modification protein rimK-like family member B##BC006368|RIMKLB|57494|ribosomal modification protein rimK-like family member B##AK124368|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##NM_144670|A2ML1|144568|alpha-2-macroglobulin-like 1##AK122624|A2ML1|144568|alpha-2-macroglobulin-like 1##AK290355|A2ML1|144568|alpha-2-macroglobulin-like 1##AL832139|A2ML1|144568|alpha-2-macroglobulin-like 1##BX648231|A2ML1|144568|alpha-2-macroglobulin-like 1##AB209063|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##AK293893|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##NM_004426|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC073964|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##U89277|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC157850|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##AK291143|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##M16985|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##AK222792|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##BC024206|M6PR|4074|mannose-6-phosphate receptor (cation dependent)##AK312689|M6PR|4074|mannose-6-phosphate receptor (cation dependent)	1.363923	0.0	
chr15	86078926	86079049	reg1011647.p1	4.601	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	-155096	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-412669	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-553661	+	AF127481 NM_144767	141280	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	259110	-	TSC_hg19_v1_chr15_-_86338178 NM_022480	259208	-	AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##BC075822|PDE8A|5151|phosphodiesterase 8A##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)##NM_022480|KLHL25|64410|kelch-like 25 (Drosophila)	0.990719	0.0	denovo_WM_7:50:0.237	denovo_WM_7:51:0.237	denovo_WM_7:52:0.237	denovo_WM_7:53:0.237
chr7	77055393	77055540	reg1013416.p2	4.601	+	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	-9748	-	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-226330	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-303520	+	TSC_hg19_v1_chr7_+_77166392 BC050008	110912	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	111340	+	AK303602 NM_001131008 NM_001131009 AK296764	111902	+	BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK303602|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_001131009|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK296764|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	0.995767	0.0	denovo_WM_7:-23:0.983
chr8	74086481	74086661	reg1006940.p1	4.601	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	-81129	-	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	-165459	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-636928	+	BC150551 BC150552 NM_001243237	85165	-	CR456773 L16558 AB529035 BC071671 BC071895 BC087837 BC071894 BC001476 BC006095 X57959 AB055763 AK225246 AK225254 AK291119 AK313365 X52967 BC009599 NM_000971	119286	-	TSC_hg19_v1_chr8_+_74206836 NM_172037	120238	+	AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301##CR456773|RPL7|6129|ribosomal protein L7##L16558|RPL7|6129|ribosomal protein L7##BC071671|RPL7|6129|ribosomal protein L7##BC071895|RPL7|6129|ribosomal protein L7##BC087837|RPL7|6129|ribosomal protein L7##BC071894|RPL7|6129|ribosomal protein L7##BC006095|RPL7|6129|ribosomal protein L7##X57959|RPL7|6129|ribosomal protein L7##AK225246|RPL7|6129|ribosomal protein L7##AK225254|RPL7|6129|ribosomal protein L7##AK291119|RPL7|6129|ribosomal protein L7##AK313365|RPL7|6129|ribosomal protein L7##X52967|RPL7|6129|ribosomal protein L7##BC009599|RPL7|6129|ribosomal protein L7##NM_000971|RPL7|6129|ribosomal protein L7##NM_172037|RDH10|157506|retinol dehydrogenase 10 (all-trans)	0.998675	0.0	
chr10	86087801	86087981	reg1012857.p1	4.600	+	BX641033 NM_001012720 NM_001012722 NM_002921 U14910 BC011349 BC008094 BC042536 CU675929 DQ892074 DQ895267	-83064	+	AB463829 AB031547 NM_015613 DQ426882 DQ426881	-86624	-	BX648524 NM_001017924 BC140765 BC144475	-102578	-	TSC_hg19_v1_chr10_+_86088344 NM_018999 AK298966 BC030528	503	+	AB032954 TSC_hg19_v1_chr10_+_86131668	43727	+	TSC_hg19_v1_chr10_+_86184685 AK294321	96804	+	BX641033|RGR|5995|retinal G protein coupled receptor##NM_001012720|RGR|5995|retinal G protein coupled receptor##NM_001012722|RGR|5995|retinal G protein coupled receptor##NM_002921|RGR|5995|retinal G protein coupled receptor##U14910|RGR|5995|retinal G protein coupled receptor##BC011349|RGR|5995|retinal G protein coupled receptor##BC008094|RGR|5995|retinal G protein coupled receptor##BC042536|RGR|5995|retinal G protein coupled receptor##DQ892074|RGR|5995|retinal G protein coupled receptor##DQ895267|RGR|5995|retinal G protein coupled receptor##AB031547|LRIT1|26103|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1##NM_015613|LRIT1|26103|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1##BX648524|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##NM_001017924|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##BC140765|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##BC144475|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##NM_018999|FAM190B|54462|family with sequence similarity 190, member B##AK298966|FAM190B|54462|family with sequence similarity 190, member B##BC030528|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AK294321|FAM190B|54462|family with sequence similarity 190, member B	0.997017	0.0	denovo_WM_7:-17:0.313	denovo_WM_7:-18:0.313	denovo_WM_7:-19:0.313
chr12	67776456	67776553	reg1009541.p1	4.600	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	-113074	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	-113332	+	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	-113402	+	TSC_hg19_v1_chr12_+_68042500 AK313937 NM_003583 NM_006482 BC005809 BC006375 Y13493	266119	+	X62468 X62469 X62470 X62471 X62472 X62473 X62474 AF506749 AY044154 AY255839 X87308 AB451324 AB451453 AB590804 AY255837 AM903379 V00543 X13274 NM_000619 X01992 BC070256	776918	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	843048	-	BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK313937|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_003583|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_006482|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC005809|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC006375|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##Y13493|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##X62468|IFNG|3458|interferon, gamma##X62469|IFNG|3458|interferon, gamma##X62470|IFNG|3458|interferon, gamma##X62471|IFNG|3458|interferon, gamma##X62472|IFNG|3458|interferon, gamma##X62473|IFNG|3458|interferon, gamma##X62474|IFNG|3458|interferon, gamma##AF506749|IFNG|3458|interferon, gamma##AY044154|IFNG|3458|interferon, gamma##AY255839|IFNG|3458|interferon, gamma##X87308|IFNG|3458|interferon, gamma##AB451324|IFNG|3458|interferon, gamma##AB451453|IFNG|3458|interferon, gamma##AY255837|IFNG|3458|interferon, gamma##AM903379|IFNG|3458|interferon, gamma##V00543|IFNG|3458|interferon, gamma##X13274|IFNG|3458|interferon, gamma##NM_000619|IFNG|3458|interferon, gamma##X01992|IFNG|3458|interferon, gamma##BC070256|IFNG|3458|interferon, gamma##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26	0.0	0.0	
chr2	70335935	70336115	reg1001235.p3	4.600	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-21027	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-21108	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-21198	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	82096	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	139694	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	149225	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.0	0.0	
chr7	130716451	130716556	reg1009096.p2	4.600	+	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-297576	-	AF294347 AF431815 BC038415 NM_052933	-345148	-	TSC_hg19_v1_chr7_-_130353589 AK291409 NM_012133	-362908	-	TSC_hg19_v1_chr7_-_130792857 BC047367	76356	-	AK294384 NM_001145354	78351	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	296103	+	AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##AF294347|TSGA13|114960|testis specific, 13##AF431815|TSGA13|114960|testis specific, 13##BC038415|TSGA13|114960|testis specific, 13##NM_052933|TSGA13|114960|testis specific, 13##AK291409|COPG2|26958|coatomer protein complex, subunit gamma 2##NM_012133|COPG2|26958|coatomer protein complex, subunit gamma 2##BC047367|FLJ43663|378805|uncharacterized LOC378805##AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs	0.0	0.0	
chr8	72739799	72739914	reg1000119.p2	4.600	+	BC035138 BC048982 TSC_hg19_v1_chr8_-_72459928	-279947	-	AJ000098 NM_000503 TSC_hg19_v1_chr8_-_72274481	-465381	-	TSC_hg19_v1_chr8_-_72274302 AK307379	-465563	-	TSC_hg19_v1_chr8_+_72756330 AK123315 BC094782	16418	+	TSC_hg19_v1_chr8_+_72756336 BX647470	16484	+	TSC_hg19_v1_chr8_-_72756449 AF087036 AB463900 BT007169	16583	-	AJ000098|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_000503|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK307379|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK123315|LOC100132891|100132891|uncharacterized LOC100132891##AF087036|MSC|9242|musculin##BT007169|MSC|9242|musculin	0.0	0.0	
chr12	57084024	57084204	reg1011716.p2	4.599	+	TSC_hg19_v1_chr12_-_57082069 AK298147 NM_006601 AK293139	-2007	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	-2113	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	-2174	-	TSC_hg19_v1_chr12_-_57118269 AB463919 CR450295 AY034001	34170	-	BC105120 BC105122 TSC_hg19_v1_chr12_-_57119084 BC106041 AF054187 AY605660 AY911673 X80909 AK311904 AK096699 AK223085 AK293209	34928	-	TSC_hg19_v1_chr12_-_57119316 NM_001113202 NM_001113203	35204	-	AK298147|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##NM_006601|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK293139|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##CR450295|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY034001|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105120|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105122|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC106041|NACA|4666|nascent polypeptide-associated complex alpha subunit##AF054187|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY605660|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY911673|NACA|4666|nascent polypeptide-associated complex alpha subunit##X80909|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK311904|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK096699|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK223085|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK293209|NACA|4666|nascent polypeptide-associated complex alpha subunit##NM_001113202|NACA|4666|nascent polypeptide-associated complex alpha subunit##NM_001113203|NACA|4666|nascent polypeptide-associated complex alpha subunit	2.955559	0.0	denovo_WM_7:2:0.952	denovo_WM_7:-12:0.445	denovo_WM_7:-13:0.462	denovo_WM_7:67:0.840
chr14	68750670	68750805	reg1013529.p2	4.599	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-464217	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-467438	-	AK315462 NM_152443	-582135	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	508983	-	NM_001244698 NM_004926	509893	-	NM_001244701 AB528867	512247	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr17	6942753	6942865	reg1012027.p1	4.599	+	TSC_hg19_v1_chr17_+_6939347 BC142618 NM_201566	-3424	+	TSC_hg19_v1_chr17_+_6926416 AK122893	-16392	+	TSC_hg19_v1_chr17_+_6926368 BC059404 NM_181844 AK293102 AK292878 AB076580	-16432	+	AK074674 NM_153357	4432	-	D50532 BC027858 BC039011 AK291975 AK292363 NM_006344 NM_182906	40742	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	74784	-	BC142618|SLC16A13|201232|solute carrier family 16, member 13 (monocarboxylic acid transporter 13)##NM_201566|SLC16A13|201232|solute carrier family 16, member 13 (monocarboxylic acid transporter 13)##AK122893|BCL6B|255877|B-cell CLL/lymphoma 6, member B##BC059404|BCL6B|255877|B-cell CLL/lymphoma 6, member B##NM_181844|BCL6B|255877|B-cell CLL/lymphoma 6, member B##AK293102|BCL6B|255877|B-cell CLL/lymphoma 6, member B##AK292878|BCL6B|255877|B-cell CLL/lymphoma 6, member B##AB076580|BCL6B|255877|B-cell CLL/lymphoma 6, member B##AK074674|SLC16A11|162515|solute carrier family 16, member 11 (monocarboxylic acid transporter 11)##NM_153357|SLC16A11|162515|solute carrier family 16, member 11 (monocarboxylic acid transporter 11)##D50532|CLEC10A|10462|C-type lectin domain family 10, member A##BC027858|CLEC10A|10462|C-type lectin domain family 10, member A##BC039011|CLEC10A|10462|C-type lectin domain family 10, member A##AK291975|CLEC10A|10462|C-type lectin domain family 10, member A##AK292363|CLEC10A|10462|C-type lectin domain family 10, member A##NM_006344|CLEC10A|10462|C-type lectin domain family 10, member A##NM_182906|CLEC10A|10462|C-type lectin domain family 10, member A##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2	0.992394	0.0	denovo_WM_7:-21:0.447	denovo_WM_7:-22:0.447
chr20	46604106	46604273	reg1008336.p1	4.599	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-188871	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-189437	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-473505	+	AB037836 TSC_hg19_v1_chr20_-_47444291	840097	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	840250	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	934129	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.987158	0.0	denovo_WM_7:-34:0.987
chr4	141170605	141170737	reg1011056.p1	4.599	+	NM_018717 TSC_hg19_v1_chr4_-_141075339	-95339	-	AK296891 TSC_hg19_v1_chr4_-_141074443 AB463106 BC137130 BC137131 AK123604	-96333	-	AK307231 TSC_hg19_v1_chr4_+_140587164 U77604 CR407640 DQ893384 DQ896704	-583537	+	AK027797 NM_032547	7768	+	NM_001153446 NM_001153635 BC062684 NM_001153585 NM_001153690	93934	+	NM_001153484 NM_001153552 NM_001153663 TSC_hg19_v1_chr4_+_141294715	124025	+	NM_018717|MAML3|55534|mastermind-like 3 (Drosophila)##AK296891|MAML3|55534|mastermind-like 3 (Drosophila)##BC137130|MAML3|55534|mastermind-like 3 (Drosophila)##BC137131|MAML3|55534|mastermind-like 3 (Drosophila)##AK123604|MAML3|55534|mastermind-like 3 (Drosophila)##AK307231|MGST2|4258|microsomal glutathione S-transferase 2##U77604|MGST2|4258|microsomal glutathione S-transferase 2##CR407640|MGST2|4258|microsomal glutathione S-transferase 2##DQ893384|MGST2|4258|microsomal glutathione S-transferase 2##DQ896704|MGST2|4258|microsomal glutathione S-transferase 2##AK027797|SCOC|60592|short coiled-coil protein##NM_032547|SCOC|60592|short coiled-coil protein##NM_001153446|SCOC|60592|short coiled-coil protein##NM_001153635|SCOC|60592|short coiled-coil protein##BC062684|SCOC|60592|short coiled-coil protein##NM_001153585|SCOC|60592|short coiled-coil protein##NM_001153690|SCOC|60592|short coiled-coil protein##NM_001153484|SCOC|60592|short coiled-coil protein##NM_001153552|SCOC|60592|short coiled-coil protein##NM_001153663|SCOC|60592|short coiled-coil protein	0.951632	0.0	denovo_WM_7:-8:0.932
chr6	27832448	27832579	reg1005328.p1	4.599	+	BC009783 TSC_hg19_v1_chr6_+_27806346 AK312228 BC011372 CU679487 DQ891028 DQ894207 BC101411 BC101412 BC101413 NM_003520	-26133	+	BC104198 BC104199 NM_003510 AK311941 BC034487	-26379	-	BC111093 BC111434 BC128033 NM_003541 BC148271 DQ892605 DQ895845 EU446976 AB463742 AK312028	-33193	-	BC105129 BC112072 TSC_hg19_v1_chr6_+_27833095 BC069306 NM_003511 CU686736 EU446965	569	+	AB464568 EU446959 BC101583 BC101581 BC069101 NM_005322 TSC_hg19_v1_chr6_-_27835367	2826	-	BC067494 BC066884 BC067493 BC069305 NM_003533 TSC_hg19_v1_chr6_-_27840125	7595	-	BC009783|HIST1H2BN|8341|histone cluster 1, H2bn##AK312228|HIST1H2BN|8341|histone cluster 1, H2bn##BC011372|HIST1H2BN|8341|histone cluster 1, H2bn##DQ891028|HIST1H2BN|8341|histone cluster 1, H2bn##DQ894207|HIST1H2BN|8341|histone cluster 1, H2bn##BC101411|HIST1H2BN|8341|histone cluster 1, H2bn##BC101412|HIST1H2BN|8341|histone cluster 1, H2bn##BC101413|HIST1H2BN|8341|histone cluster 1, H2bn##NM_003520|HIST1H2BN|8341|histone cluster 1, H2bn##BC104198|HIST1H2AK|8330|histone cluster 1, H2ak##BC104199|HIST1H2AK|8330|histone cluster 1, H2ak##NM_003510|HIST1H2AK|8330|histone cluster 1, H2ak##AK311941|HIST1H2AK|8330|histone cluster 1, H2ak##BC034487|HIST1H2AK|8330|histone cluster 1, H2ak##NM_003541|HIST1H4K|8362|histone cluster 1, H4k##BC148271|HIST1H4J|8363|histone cluster 1, H4j##DQ892605|HIST1H4F|8361|histone cluster 1, H4f##DQ895845|HIST1H4F|8361|histone cluster 1, H4f##EU446976|HIST1H4A|8359|histone cluster 1, H4a##AK312028|HIST1H4K|8362|histone cluster 1, H4k##BC112072|HIST1H2AL|8332|histone cluster 1, H2al##BC069306|HIST1H2AL|8332|histone cluster 1, H2al##NM_003511|HIST1H2AL|8332|histone cluster 1, H2al##EU446965|HIST1H2AI|8329|histone cluster 1, H2ai##EU446959|HIST1H1B|3009|histone cluster 1, H1b##BC101583|HIST1H1B|3009|histone cluster 1, H1b##BC101581|HIST1H1B|3009|histone cluster 1, H1b##BC069101|HIST1H1B|3009|histone cluster 1, H1b##NM_005322|HIST1H1B|3009|histone cluster 1, H1b##BC067494|HIST1H3I|8354|histone cluster 1, H3i##BC066884|HIST1H3I|8354|histone cluster 1, H3i##BC067493|HIST1H3I|8354|histone cluster 1, H3i##BC069305|HIST1H3I|8354|histone cluster 1, H3i##NM_003533|HIST1H3I|8354|histone cluster 1, H3i	1.682315	0.0	denovo_WM_7:7:0.395	denovo_WM_7:22:0.428
chr7	5610263	5610396	reg1006335.p1	4.599	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-40120	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-41083	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-41488	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	22109	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	22181	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	210893	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.0	0.0	
chr10	34424650	34424767	reg1013648.p2	4.598	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-800710	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-800894	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-801255	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	679443	-	AK310225 AK300491 NM_001198778 NM_001198779	938504	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	954564	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.0	0.0	
chr12	82868346	82868474	reg1012954.p2	4.598	+	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	-116101	+	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	-116234	-	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-715301	-	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	212290	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	212507	+	TSC_hg19_v1_chr12_+_83081158 AK299771 BC093852 BC143378 BC093854 AK315285 AB463319 AM393141	212851	+	NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK299771|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093852|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC143378|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093854|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK315285|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AM393141|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.0	0.0	
chr14	50075059	50075146	reg1012563.p1	4.598	+	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	-9642	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-22009	-	AK309211 NM_001113498	-1930946	-	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	12242	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	12605	+	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	25594	-	NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2	2.16494	0.0	denovo_WM_7:56:0.297
chr14	89849319	89849468	reg1009681.p2	4.598	+	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-558400	+	BC150639 NM_183387 BC032685 TSC_hg19_v1_chr14_-_89259288	-590183	-	NM_207662 BC027607 AF474376	-788640	+	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	29383	-	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	34017	-	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	236202	-	AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##BC150639|EML5|161436|echinoderm microtubule associated protein like 5##NM_183387|EML5|161436|echinoderm microtubule associated protein like 5##BC032685|EML5|161436|echinoderm microtubule associated protein like 5##NM_207662|ZC3H14|79882|zinc finger CCCH-type containing 14##BC027607|ZC3H14|79882|zinc finger CCCH-type containing 14##AF474376|ZC3H14|79882|zinc finger CCCH-type containing 14##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3	1.569371	0.0	denovo_WM_7:4:0.240	denovo_WM_7:-11:0.317
chr15	55568074	55568194	reg1005521.p1	4.598	+	BC132800 BC136423 BC107680 NM_183236	-5036	-	AF125393 NM_183234 U57094 U38654 NM_004580	-5597	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	-78955	-	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	13857	-	NM_004855 AK293666 AK314706 BC017711	43029	+	TSC_hg19_v1_chr15_-_55611322 AB593170	43206	-	BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004855|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK293666|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK314706|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##BC017711|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B	0.993652	0.0	
chr19	43013224	43013358	reg1013530.p1	4.598	+	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	-66167	-	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	-81753	-	TSC_hg19_v1_chr19_-_42928157 BC029301	-85078	-	X16356 TSC_hg19_v1_chr19_-_43031473	18118	-	M76742 S71326 CU677011 AY766113 TSC_hg19_v1_chr19_-_43032631 D90311 X14831 X16354 D90313 J03858 BC024164 BC014473 D12502 D90312 M69176 M72238 AL833584 AK314211 NM_001024912 NM_001184813 NM_001184815 NM_001184816 NM_001205344 NM_001712	19301	-	CU693190 DQ891971 DQ895161 X52378 AK297012 BC026263 D90064 M33326 AK312652 NM_001816	85739	-	BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive##BC029301|LIPE|3991|lipase, hormone-sensitive##X16356|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M76742|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##S71326|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AY766113|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90311|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X14831|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X16354|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90313|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##J03858|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC024164|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC014473|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D12502|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90312|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M69176|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M72238|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AL833584|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AK314211|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001024912|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184813|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184815|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184816|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001205344|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001712|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##DQ891971|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##DQ895161|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##X52378|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK297012|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##BC026263|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##D90064|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##M33326|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK312652|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##NM_001816|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8	0.0	0.0	
chr19	49190558	49190671	reg1011474.p1	4.598	+	BC018654 BC018697 BC033207 NM_145807 BC021210	-14341	-	AF067662 AB018195 TSC_hg19_v1_chr19_-_49149299 AY358967 NM_001217	-41263	-	AB208807 TSC_hg19_v1_chr19_-_49140623 BC011965 U79283 AK310025 NM_001352	-50010	-	NM_000511 NM_001097638 AK290277 D87942 BC001899 BC121066	8647	+	AK093389 AX748093 NM_182574 BC106047	29631	-	TSC_hg19_v1_chr19_-_49222963 NM_001130915 AK131427	32352	-	BC018654|NTN5|126147|netrin 5##BC018697|NTN5|126147|netrin 5##BC033207|NTN5|126147|netrin 5##NM_145807|NTN5|126147|netrin 5##BC021210|NTN5|126147|netrin 5##AF067662|CA11|770|carbonic anhydrase XI##AB018195|CA11|770|carbonic anhydrase XI##AY358967|CA11|770|carbonic anhydrase XI##NM_001217|CA11|770|carbonic anhydrase XI##AB208807|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##BC011965|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##U79283|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##AK310025|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_001352|DBP|1628|D site of albumin promoter (albumin D-box) binding protein##NM_000511|FUT2|2524|fucosyltransferase 2 (secretor status included)##NM_001097638|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK290277|FUT2|2524|fucosyltransferase 2 (secretor status included)##D87942|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC001899|FUT2|2524|fucosyltransferase 2 (secretor status included)##BC121066|FUT2|2524|fucosyltransferase 2 (secretor status included)##AK093389|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_182574|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##BC106047|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##NM_001130915|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator##AK131427|MAMSTR|284358|MEF2 activating motif and SAP domain containing transcriptional regulator	0.984296	0.0	denovo_WM_7:64:0.390	denovo_WM_7:69:0.256
chr2	133733290	133733404	reg1011425.p2	4.598	+	AK124659 TSC_hg19_v1_chr2_-_133539761	-193653	-	NM_001077427 AK309668	-304237	-	NM_144586	-304867	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	446007	-	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	592691	-	NM_002410 D17716 AF113921	1278538	+	AK124659|NCKAP5|344148|NCK-associated protein 5##NM_001077427|LYPD1|116372|LY6/PLAUR domain containing 1##AK309668|LYPD1|116372|LY6/PLAUR domain containing 1##NM_144586|LYPD1|116372|LY6/PLAUR domain containing 1##AK092189|NCKAP5|344148|NCK-associated protein 5##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	0.990183	0.0	denovo_WM_7:16:0.207	denovo_WM_7:17:0.748
chr14	23281762	23281873	reg1007344.p2	4.597	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-45972	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-214628	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-223683	-	TSC_hg19_v1_chr14_-_23284568 AK025377	2762	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	2815	-	AB020532 BX161519 NM_001126105	3241	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.994616	0.0	denovo_WM_7:39:0.239	denovo_WM_7:40:0.239	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239
chr17	80479977	80480045	reg1008905.p2	4.597	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-2421	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-63369	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-63448	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	126272	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	176523	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	194595	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	1.028438	0.0	
chr19	46210739	46210919	reg1001571.p4	4.597	+	TSC_hg19_v1_chr19_+_46195931 AK000091 AK172764 AK222636 BC011553 AB528634	-14901	+	NM_001163377 NM_017659	-15089	+	NM_004597 NM_177542	-15387	-	TSC_hg19_v1_chr19_-_46220589 AK091414 AX746967	9784	-	TSC_hg19_v1_chr19_-_46234155 NM_001080469	23318	-	AB464211 TSC_hg19_v1_chr19_-_46272110	61286	-	AK000091|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK172764|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK222636|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##BC011553|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_001163377|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_017659|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_004597|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_177542|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_001080469|FBXO46|23403|F-box protein 46	1.055148	0.0	
chr20	40246074	40246201	reg1013251.p1	4.597	+	AB089149 NM_052846	-250640	-	TSC_hg19_v1_chr20_+_39969434 BX647082 NM_022896 BC140806 BC144598	-276622	+	TSC_hg19_v1_chr20_-_39946149 AB007855	-299922	-	TSC_hg19_v1_chr20_-_40247013 BC039860 BC040016 AK296955 BC012516 AY034072 NM_032221	924	-	AB006621 BC153300 TSC_hg19_v1_chr20_-_41818547 AF043644 NM_007050 NM_133170	1572373	-	TSC_hg19_v1_chr20_+_42086514 NM_006275	1840355	+	AB089149|EMILIN3|90187|elastin microfibril interfacer 3##NM_052846|EMILIN3|90187|elastin microfibril interfacer 3##BX647082|LPIN3|64900|lipin 3##NM_022896|LPIN3|64900|lipin 3##BC140806|LPIN3|64900|lipin 3##BC144598|LPIN3|64900|lipin 3##AB007855|ZHX3|23051|zinc fingers and homeoboxes 3##BC039860|CHD6|84181|chromodomain helicase DNA binding protein 6##BC040016|CHD6|84181|chromodomain helicase DNA binding protein 6##AK296955|CHD6|84181|chromodomain helicase DNA binding protein 6##BC012516|CHD6|84181|chromodomain helicase DNA binding protein 6##AY034072|CHD6|84181|chromodomain helicase DNA binding protein 6##NM_032221|CHD6|84181|chromodomain helicase DNA binding protein 6##AB006621|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##BC153300|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##AF043644|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_007050|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_133170|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_006275|SRSF6|6431|serine/arginine-rich splicing factor 6	0.0	0.0	
chr6	149068032	149068164	reg1000674.p2	4.597	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-403907	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-404108	+	AK025495 NM_015278 TSC_hg19_v1_chr6_+_148663793	-404335	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	111	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	571005	+	AK315038 NM_015093 AK307650	571343	+	AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AK025495|SASH1|23328|SAM and SH3 domain containing 1##NM_015278|SASH1|23328|SAM and SH3 domain containing 1##NM_005715|UST|10090|uronyl-2-sulfotransferase##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2	0.0	0.0	
chr12	88785509	88785689	reg1009220.p1	4.596	+	TSC_hg19_v1_chr12_+_88536083 AK290436 AK302755 AK310375 AK310393 NM_181783 CR749309 BX538169 CR749244 CR933632 AJ697717 BC117177 BC117175	-249451	+	BC043398 TSC_hg19_v1_chr12_-_88535871 AK023677 DQ109808 NM_025114	-249730	-	TSC_hg19_v1_chr12_+_88429312 AK095477 NM_001009894 CR936776 AK311222 BC058014 BX640968 BX537868 BX648026 AK311153 BC035136 BC092422 AB590923 AM392924 AL137488	-356213	+	BC074725 AK293002 AF119835 AF400437 BC126166 BC143899 BC069797 BC069733 BC069783 TSC_hg19_v1_chr12_-_88974249 AF400436 M59964 AK290319 NM_000899 NM_003994	188573	-	TSC_hg19_v1_chr12_+_89744716 AK124265	959153	+	TSC_hg19_v1_chr12_-_89745782 AB451265 AB451393 BT006895 CU678402 AB463588 DQ892490 DQ895701	960186	-	AK290436|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK302755|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310375|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310393|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##NM_181783|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749309|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BX538169|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749244|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR933632|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AJ697717|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117177|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117175|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC043398|CEP290|80184|centrosomal protein 290kDa##AK023677|CEP290|80184|centrosomal protein 290kDa##DQ109808|CEP290|80184|centrosomal protein 290kDa##NM_025114|CEP290|80184|centrosomal protein 290kDa##AK095477|C12orf29|91298|chromosome 12 open reading frame 29##NM_001009894|C12orf29|91298|chromosome 12 open reading frame 29##CR936776|C12orf29|91298|chromosome 12 open reading frame 29##AK311222|C12orf29|91298|chromosome 12 open reading frame 29##BC058014|C12orf29|91298|chromosome 12 open reading frame 29##BX640968|C12orf29|91298|chromosome 12 open reading frame 29##BX537868|C12orf29|91298|chromosome 12 open reading frame 29##BX648026|C12orf29|91298|chromosome 12 open reading frame 29##AK311153|C12orf29|91298|chromosome 12 open reading frame 29##BC035136|C12orf29|91298|chromosome 12 open reading frame 29##BC092422|C12orf29|91298|chromosome 12 open reading frame 29##AM392924|C12orf29|91298|chromosome 12 open reading frame 29##AL137488|C12orf29|91298|chromosome 12 open reading frame 29##BC074725|KITLG|4254|KIT ligand##AK293002|KITLG|4254|KIT ligand##AF119835|KITLG|4254|KIT ligand##AF400437|KITLG|4254|KIT ligand##BC126166|KITLG|4254|KIT ligand##BC143899|KITLG|4254|KIT ligand##BC069797|KITLG|4254|KIT ligand##BC069733|KITLG|4254|KIT ligand##BC069783|KITLG|4254|KIT ligand##AF400436|KITLG|4254|KIT ligand##M59964|KITLG|4254|KIT ligand##AK290319|KITLG|4254|KIT ligand##NM_000899|KITLG|4254|KIT ligand##NM_003994|KITLG|4254|KIT ligand##AK124265|LOC100131490|100131490|uncharacterized LOC100131490##AB451265|DUSP6|1848|dual specificity phosphatase 6##AB451393|DUSP6|1848|dual specificity phosphatase 6##BT006895|DUSP6|1848|dual specificity phosphatase 6##DQ892490|DUSP6|1848|dual specificity phosphatase 6##DQ895701|DUSP6|1848|dual specificity phosphatase 6	0.0	0.0	
chr16	11318666	11318798	reg1012600.p1	4.596	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-280289	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-282497	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-282566	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	31318	-	X63758 BC096135 BC096136 BC096137 NM_005425	44406	-	NM_021247	48719	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	0.548914	0.0	denovo_WM_7:-27:0.487
chr16	21529432	21529612	reg1000638.p3	4.596	+	BC036263 NM_130464	-92865	-	BX648477 NM_001014444 NM_001888	-215135	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-239874	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	2230	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	81368	+	AF151839 TSC_hg19_v1_chr16_+_21611174	81632	+	BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9	0.155661	0.0	
chr4	87800913	87801035	reg1011769.p1	4.596	+	AJ583502 BC107051 BC107052 EF437223 NM_197965	-30633	-	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-285501	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-426651	-	BC016746 BC063410 NM_144645	12586	-	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	55241	+	TSC_hg19_v1_chr4_+_87857481 L13743	56509	+	AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1	0.997583	0.0	denovo_WM_7:38:0.308	denovo_WM_7:39:0.308	denovo_WM_7:40:0.314
chr7	28738789	28738910	reg1005049.p4	4.596	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	-13166	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-208084	+	L05911 NM_004904	-263616	+	CU690330 TSC_hg19_v1_chr7_-_28997732	258848	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	259080	-	AK293803 NM_014817 TSC_hg19_v1_chr7_-_28998036	259183	-	L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats##NM_014817|TRIL|9865|TLR4 interactor with leucine-rich repeats	1.741041	0.0	denovo_WM_7:47:0.204	denovo_WM_7:-48:0.235	denovo_WM_7:-49:0.629	denovo_WM_7:49:0.331
chr10	72147371	72147454	reg1011814.p2	4.595	+	AK094734 TSC_hg19_v1_chr10_-_72142380 AK001613 AK001706 NM_018205 NM_018239	-5048	-	BC024001 AY358318 NM_207119	-6032	-	TSC_hg19_v1_chr10_-_72083680 AL122117	-63714	-	NM_004096 TSC_hg19_v1_chr10_+_72163879	16458	+	TSC_hg19_v1_chr10_+_72163900 AK313724	16491	+	TSC_hg19_v1_chr10_+_72163919 BC050633	16510	+	AK094734|LRRC20|55222|leucine rich repeat containing 20##AK001613|LRRC20|55222|leucine rich repeat containing 20##AK001706|LRRC20|55222|leucine rich repeat containing 20##NM_018205|LRRC20|55222|leucine rich repeat containing 20##NM_018239|LRRC20|55222|leucine rich repeat containing 20##BC024001|LRRC20|55222|leucine rich repeat containing 20##AY358318|LRRC20|55222|leucine rich repeat containing 20##NM_207119|LRRC20|55222|leucine rich repeat containing 20##AL122117|LRRC20|55222|leucine rich repeat containing 20##NM_004096|EIF4EBP2|1979|eukaryotic translation initiation factor 4E binding protein 2##AK313724|EIF4EBP2|1979|eukaryotic translation initiation factor 4E binding protein 2##BC050633|EIF4EBP2|1979|eukaryotic translation initiation factor 4E binding protein 2	0.0	0.019494	
chr15	66374975	66375134	reg1010207.p1	4.595	+	TSC_hg19_v1_chr15_-_66321664 AK054827	-53361	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-213207	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-290461	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	171023	-	NM_133375 AK295392 BC022089	210591	+	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	210845	+	AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like	0.99773	0.0	denovo_WM_7:-33:0.238	denovo_WM_7:-34:0.238	denovo_WM_7:-35:0.238	denovo_WM_7:-36:0.238
chr17	63910922	63911102	reg1010034.p1	4.595	+	BC029524 NM_001037325	-88352	-	CR933657 TSC_hg19_v1_chr17_-_63557767	-353244	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	-353333	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	277169	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	314513	-	TSC_hg19_v1_chr17_+_64298733 BC053321	387738	+	BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##CR933657|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC053321|PRKCA|5578|protein kinase C, alpha	0.0	0.0	
chr18	8620042	8620135	reg1008543.p1	4.595	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	-10342	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	-10652	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-673182	+	AK131528 NM_015210	97280	+	AB384528 TSC_hg19_v1_chr18_+_8718600	98436	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	482534	+	BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	2.961971	0.0	denovo_WM_7:37:0.710
chr20	48315666	48315777	reg1001144.p2	4.595	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-131032	-	BC110572 BC110573 NM_004975	-216542	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-420526	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	14509	-	AB004550 TSC_hg19_v1_chr20_-_48330359	14635	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	14745	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.0	0.0	
chr2	39077336	39077452	reg1006265.p1	4.595	+	NM_024775 AK315627 TSC_hg19_v1_chr2_+_39005351 AK027112 BC018195	-72039	+	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	-98878	-	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	-184139	+	BC131534 BC060778 NM_198963 AK307514 AK296739 BC153875	25634	-	AY367766 NM_001145450 TSC_hg19_v1_chr2_+_39103127 BC102032 BC102034 BC102035	25759	+	NM_001145451	69109	+	NM_024775|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK315627|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AK027112|GEMIN6|79833|gem (nuclear organelle) associated protein 6##BC018195|GEMIN6|79833|gem (nuclear organelle) associated protein 6##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7##BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC131534|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC060778|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##NM_198963|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK307514|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AK296739|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##BC153875|DHX57|90957|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57##AY367766|MORN2|729967|MORN repeat containing 2##NM_001145450|MORN2|729967|MORN repeat containing 2##BC102032|MORN2|729967|MORN repeat containing 2##BC102034|MORN2|729967|MORN repeat containing 2##BC102035|MORN2|729967|MORN repeat containing 2##NM_001145451|ARHGEF33|100271715|Rho guanine nucleotide exchange factor (GEF) 33	0.014316	0.0	
chr3	29326291	29326471	reg1008417.p1	4.595	+	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	-3417	+	NM_001040432	-894395	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-935820	-	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	1321641	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	1322022	+	AL832766 NM_207359	1609771	-	NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1	0.986738	0.0	
chr9	18824174	18824332	reg1016397.p1	4.595	+	AK291956 TSC_hg19_v1_chr9_+_18474150 BC030262 AF176313 CU688870	-350070	+	NM_001040272 NM_052866 TSC_hg19_v1_chr9_+_18474091 AK290667 AY358327	-350165	+	AK293546 NM_003026 TSC_hg19_v1_chr9_+_17579120 BC032825 AK057744 AK312400 AK293592 AF036268 X99657 AB464202 CU689554 AB206840 AB206841 BT019682 CR542086 CR542102	-1245157	+	BC033489 AK292245 AK057474 NM_153707	208966	-	TSC_hg19_v1_chr9_+_19049372 NM_006570	225110	+	TSC_hg19_v1_chr9_+_19049391 BC009990	225138	+	AK291956|ADAMTSL1|92949|ADAMTS-like 1##BC030262|ADAMTSL1|92949|ADAMTS-like 1##AF176313|ADAMTSL1|92949|ADAMTS-like 1##NM_001040272|ADAMTSL1|92949|ADAMTS-like 1##NM_052866|ADAMTSL1|92949|ADAMTS-like 1##AK290667|ADAMTSL1|92949|ADAMTS-like 1##AY358327|ADAMTSL1|92949|ADAMTS-like 1##AK293546|SH3GL2|6456|SH3-domain GRB2-like 2##NM_003026|SH3GL2|6456|SH3-domain GRB2-like 2##BC032825|SH3GL2|6456|SH3-domain GRB2-like 2##AK057744|SH3GL2|6456|SH3-domain GRB2-like 2##AK312400|SH3GL2|6456|SH3-domain GRB2-like 2##AK293592|SH3GL2|6456|SH3-domain GRB2-like 2##AF036268|SH3GL2|6456|SH3-domain GRB2-like 2##X99657|SH3GL2|6456|SH3-domain GRB2-like 2##AB206840|SH3GL2|6456|SH3-domain GRB2-like 2##BT019682|SH3GL2|6456|SH3-domain GRB2-like 2##CR542086|SH3GL2|6456|SH3-domain GRB2-like 2##CR542102|SH3GL2|6456|SH3-domain GRB2-like 2##BC033489|FAM154A|158297|family with sequence similarity 154, member A##AK292245|FAM154A|158297|family with sequence similarity 154, member A##AK057474|FAM154A|158297|family with sequence similarity 154, member A##NM_153707|FAM154A|158297|family with sequence similarity 154, member A##NM_006570|RRAGA|10670|Ras-related GTP binding A##BC009990|RRAGA|10670|Ras-related GTP binding A	0.190676	0.0	
chr9	71708450	71708582	reg1012451.p1	4.595	+	TSC_hg19_v1_chr9_+_71650693 BC048097 BC023633 CU690546	-57829	+	NM_000144 NM_001161706 NM_181425	-58038	+	DQ890764 DQ893927 AB463461 BC039888 NM_002732	-79493	-	NM_001170414 TSC_hg19_v1_chr9_+_71736198 AK295016	27685	+	AF083893 TSC_hg19_v1_chr9_+_71736397	27895	+	NM_001170630 NM_004817 NM_201629 BC027592 TSC_hg19_v1_chr9_+_71789110	80524	+	BC048097|FXN|2395|frataxin##BC023633|FXN|2395|frataxin##NM_000144|FXN|2395|frataxin##NM_001161706|FXN|2395|frataxin##NM_181425|FXN|2395|frataxin##DQ890764|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##DQ893927|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##BC039888|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##NM_002732|PRKACG|5568|protein kinase, cAMP-dependent, catalytic, gamma##NM_001170414|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295016|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF083893|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170630|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_004817|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_201629|TJP2|9414|tight junction protein 2 (zona occludens 2)##BC027592|TJP2|9414|tight junction protein 2 (zona occludens 2)	0.88638	0.0	denovo_WM_7:-6:0.263	denovo_WM_7:-7:0.404
chr10	63930608	63930706	reg1010537.p1	4.594	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	-121561	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-269226	+	NM_032199	-269645	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	97882	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	203386	+	AJ505150 NM_199452	349549	+	BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365	0.948791	0.0	denovo_WM_7:-14:0.782
chr7	112733697	112733822	reg1008723.p1	4.594	+	NM_001146265 NM_018970 TSC_hg19_v1_chr7_-_112727844	-5919	-	TSC_hg19_v1_chr7_-_112727812 AK309392 AF250237 AK302769	-5952	-	BC030577 TSC_hg19_v1_chr7_-_112727780	-5979	-	TSC_hg19_v1_chr7_-_112758606 BC065765 BX537645	24847	-	TSC_hg19_v1_chr7_-_112758613 BC107860	24870	-	X78578 AF024579 HQ258594 BC070313 BC056666 NM_002711 BC126451 BC126453	825324	-	NM_001146265|GPR85|54329|G protein-coupled receptor 85##NM_018970|GPR85|54329|G protein-coupled receptor 85##AK309392|GPR85|54329|G protein-coupled receptor 85##AF250237|GPR85|54329|G protein-coupled receptor 85##AK302769|GPR85|54329|G protein-coupled receptor 85##BC030577|GPR85|54329|G protein-coupled receptor 85##BC065765|LOC401397|401397|uncharacterized LOC401397##BX537645|LOC401397|401397|uncharacterized LOC401397##BC107860|LOC401397|401397|uncharacterized LOC401397##X78578|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##AF024579|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##HQ258594|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC070313|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC056666|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##NM_002711|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC126451|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC126453|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A	0.0	0.0	
chr8	11396810	11396932	reg1001882.p2	4.594	+	S76617 NM_001715 BC018703 BC004473 BC038555	-45278	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-72642	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-191867	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	164849	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	230397	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	263313	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.0	0.0	
chr9	27785732	27785886	reg1012336.p1	4.594	+	AK057806 JN681271 NM_145005	-211968	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	-212338	-	TSC_hg19_v1_chr9_-_27529809 AL832572 BC033027 AK023266 NM_024761	-256159	-	AK056372 NM_152570	933493	-	TSC_hg19_v1_chr9_+_32384618 NM_002197 AF261088	4598781	+	TSC_hg19_v1_chr9_+_32384622 AK057904	4598818	+	AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##AL832572|MOB3B|79817|MOB kinase activator 3B##BC033027|MOB3B|79817|MOB kinase activator 3B##AK023266|MOB3B|79817|MOB kinase activator 3B##NM_024761|MOB3B|79817|MOB kinase activator 3B##AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_002197|ACO1|48|aconitase 1, soluble##AF261088|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble	0.0	0.0	
chr1	11741621	11741718	reg1010067.p2	4.593	+	TSC_hg19_v1_chr1_-_11741180 AK027327 AF139365 AF157482 NM_006341	-447	-	TSC_hg19_v1_chr1_+_11724261 AK314989 NM_018438 AF129536 BC020880	-17462	+	TSC_hg19_v1_chr1_+_11714940 NM_001014765 NM_033182 NM_183413 CR749368 AK296025 AK301418 AK316284 AK316347 AY040878 AK293721 BC007832 AK294053	-26748	+	NM_001127325 AK094316	10022	-	BC111064 NM_198545 AK075558 TSC_hg19_v1_chr1_+_11751786 AY358750	10134	+	TSC_hg19_v1_chr1_+_11796132 NM_001040194 NM_001040195 NM_001040196 NM_001040197 NM_020350	54476	+	AK027327|MAD2L2|10459|MAD2 mitotic arrest deficient-like 2 (yeast)##AF139365|MAD2L2|10459|MAD2 mitotic arrest deficient-like 2 (yeast)##AF157482|MAD2L2|10459|MAD2 mitotic arrest deficient-like 2 (yeast)##NM_006341|MAD2L2|10459|MAD2 mitotic arrest deficient-like 2 (yeast)##AK314989|FBXO6|26270|F-box protein 6##NM_018438|FBXO6|26270|F-box protein 6##AF129536|FBXO6|26270|F-box protein 6##BC020880|FBXO6|26270|F-box protein 6##NM_001014765|FBXO44|93611|F-box protein 44##NM_033182|FBXO44|93611|F-box protein 44##NM_183413|FBXO44|93611|F-box protein 44##CR749368|FBXO44|93611|F-box protein 44##AK296025|FBXO44|93611|F-box protein 44##AK301418|FBXO44|93611|F-box protein 44##AK316284|FBXO44|93611|F-box protein 44##AK316347|FBXO44|93611|F-box protein 44##AY040878|FBXO44|93611|F-box protein 44##AK293721|FBXO44|93611|F-box protein 44##BC007832|FBXO44|93611|F-box protein 44##AK294053|FBXO44|93611|F-box protein 44##NM_001127325|MAD2L2|10459|MAD2 mitotic arrest deficient-like 2 (yeast)##AK094316|MAD2L2|10459|MAD2 mitotic arrest deficient-like 2 (yeast)##BC111064|C1orf187|374946|chromosome 1 open reading frame 187##NM_198545|C1orf187|374946|chromosome 1 open reading frame 187##AK075558|C1orf187|374946|chromosome 1 open reading frame 187##AY358750|C1orf187|374946|chromosome 1 open reading frame 187##NM_001040194|AGTRAP|57085|angiotensin II receptor-associated protein##NM_001040195|AGTRAP|57085|angiotensin II receptor-associated protein##NM_001040196|AGTRAP|57085|angiotensin II receptor-associated protein##NM_001040197|AGTRAP|57085|angiotensin II receptor-associated protein##NM_020350|AGTRAP|57085|angiotensin II receptor-associated protein	0.979893	0.0	denovo_WM_7:1:0.419	denovo_WM_7:2:0.469
chr17	28047738	28047867	reg1009909.p2	4.593	+	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-97951	-	AK096431 NM_032854	-99410	-	TSC_hg19_v1_chr17_+_27920483 NM_152345	-127300	+	TSC_hg19_v1_chr17_-_28088446 BC011636	40656	-	AK302745 AK303060 NM_001145053 AK299608	209094	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	209331	-	BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##NM_152345|ANKRD13B|124930|ankyrin repeat domain 13B##BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)	0.780458	0.0	denovo_WM_7:-48:0.380
chr18	21059939	21060093	reg1011879.p1	4.593	+	TSC_hg19_v1_chr18_+_21033285 AF013591	-26712	+	TSC_hg19_v1_chr18_+_21033263 BC039729	-26746	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	-26770	+	TSC_hg19_v1_chr18_+_21083474 NM_013326 AK057192 AK295246 AK296230 AK294169 BC008305 BC002950	23458	+	TSC_hg19_v1_chr18_-_21166428 BC063302 AF002020	106392	-	TSC_hg19_v1_chr18_-_21166458 AK295715 NM_000271	106494	-	AF013591|RIOK3|8780|RIO kinase 3 (yeast)##BC039729|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)##NM_013326|C18orf8|29919|chromosome 18 open reading frame 8##AK057192|C18orf8|29919|chromosome 18 open reading frame 8##AK295246|C18orf8|29919|chromosome 18 open reading frame 8##AK296230|C18orf8|29919|chromosome 18 open reading frame 8##AK294169|C18orf8|29919|chromosome 18 open reading frame 8##BC008305|C18orf8|29919|chromosome 18 open reading frame 8##BC002950|C18orf8|29919|chromosome 18 open reading frame 8##BC063302|NPC1|4864|Niemann-Pick disease, type C1##AF002020|NPC1|4864|Niemann-Pick disease, type C1##AK295715|NPC1|4864|Niemann-Pick disease, type C1##NM_000271|NPC1|4864|Niemann-Pick disease, type C1	0.0	0.0	
chr21	45283932	45283998	reg1008136.p3	4.593	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-74480	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	-74550	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-87736	-	TSC_hg19_v1_chr21_+_45285029 AY358704	1095	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	1158	+	AK300562 NM_001037553	61313	+	AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.968031	0.0	denovo_WM_7:49:0.448	denovo_WM_7:50:0.502
chr2	191440132	191440228	reg1011931.p2	4.593	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-40714	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-40753	-	AK098085 TSC_hg19_v1_chr2_+_191301120	-139110	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	73786	+	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	305366	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	305377	+	NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK098085|MFSD6|54842|major facilitator superfamily domain containing 6##NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase	0.0	0.0	
chr10	70787168	70787348	reg1003792.p2	4.592	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-38723	+	BC104671 NM_004728 TSC_hg19_v1_chr10_+_70715925 BC009432 U41387 AK315585 BC008071 BC004182 BC017228 AB527408 CU675917	-71326	+	TSC_hg19_v1_chr10_+_70661097 CU674120 DQ892547 DQ895758	-126141	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	60578	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	60626	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	96633	+	NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##BC104671|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##NM_004728|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC009432|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##U41387|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##AK315585|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC008071|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC004182|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##BC017228|DDX21|9188|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21##DQ892547|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##DQ895758|DDX50|79009|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50##NM_002727|SRGN|5552|serglycin##D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	0.0	0.0	
chr1	15744364	15744456	reg1008550.p2	4.592	+	BC068473 TSC_hg19_v1_chr1_+_15736425 BC007233 BC014923 BC023611	-7975	+	TSC_hg19_v1_chr1_+_15736390 NM_024329	-8010	+	AK057963 NM_052929	-170643	+	BC015118 CR749296 NM_007272 AK289447 BC059779 S82198	20537	+	NM_033440 BC007031 BC069331 BC069432 M16652 AK312198 M16631 D00236 CR450291	38825	+	BC069412 BC069455 M16653 NM_015849 BC113540 BC113542 BC171735 HQ258147	58195	+	BC068473|EFHD2|79180|EF-hand domain family, member D2##BC007233|EFHD2|79180|EF-hand domain family, member D2##BC014923|EFHD2|79180|EF-hand domain family, member D2##BC023611|EFHD2|79180|EF-hand domain family, member D2##NM_024329|EFHD2|79180|EF-hand domain family, member D2##AK057963|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_052929|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##BC015118|CTRC|11330|chymotrypsin C (caldecrin)##CR749296|CTRC|11330|chymotrypsin C (caldecrin)##NM_007272|CTRC|11330|chymotrypsin C (caldecrin)##AK289447|CTRC|11330|chymotrypsin C (caldecrin)##BC059779|CTRC|11330|chymotrypsin C (caldecrin)##S82198|CTRC|11330|chymotrypsin C (caldecrin)##NM_033440|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC007031|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC069331|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC069432|CELA2A|63036|chymotrypsin-like elastase family, member 2A##M16652|CELA2A|63036|chymotrypsin-like elastase family, member 2A##AK312198|CELA2A|63036|chymotrypsin-like elastase family, member 2A##M16631|CELA2A|63036|chymotrypsin-like elastase family, member 2A##D00236|CELA2A|63036|chymotrypsin-like elastase family, member 2A##CR450291|CELA2A|63036|chymotrypsin-like elastase family, member 2A##BC069412|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC069455|CELA2B|51032|chymotrypsin-like elastase family, member 2B##M16653|CELA2B|51032|chymotrypsin-like elastase family, member 2B##NM_015849|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC113540|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC113542|CELA2B|51032|chymotrypsin-like elastase family, member 2B##BC171735|CELA2B|51032|chymotrypsin-like elastase family, member 2B##HQ258147|CELA2B|51032|chymotrypsin-like elastase family, member 2B	1.969281	0.0	denovo_WM_7:70:0.892	denovo_WM_7:85:0.470	denovo_WM_7:86:0.487
chr16	67600437	67600568	reg1013112.p1	4.592	+	AK314804 NM_001191022 NM_006565 TSC_hg19_v1_chr16_+_67596455 U25435 AB209793 BC014267	-4108	+	BC041086 AK023787 TSC_hg19_v1_chr16_+_67573861 BC098587	-26638	+	AK097087 TSC_hg19_v1_chr16_+_67572105	-28458	+	TSC_hg19_v1_chr16_+_67679038 AB113647 NM_001013838	78524	+	TSC_hg19_v1_chr16_+_67679059 FJ026014 AL832446	78615	+	TSC_hg19_v1_chr16_+_67686881 BC043154	86386	+	AK314804|CTCF|10664|CCCTC-binding factor (zinc finger protein)##NM_001191022|CTCF|10664|CCCTC-binding factor (zinc finger protein)##NM_006565|CTCF|10664|CCCTC-binding factor (zinc finger protein)##U25435|CTCF|10664|CCCTC-binding factor (zinc finger protein)##AB209793|CTCF|10664|CCCTC-binding factor (zinc finger protein)##BC014267|CTCF|10664|CCCTC-binding factor (zinc finger protein)##BC041086|FAM65A|79567|family with sequence similarity 65, member A##AK023787|FAM65A|79567|family with sequence similarity 65, member A##BC098587|FAM65A|79567|family with sequence similarity 65, member A##AK097087|FAM65A|79567|family with sequence similarity 65, member A##AB113647|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##NM_001013838|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##FJ026014|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##AL832446|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##BC043154|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing	1.073444	0.0	
chr3	133339331	133339468	reg1009252.p2	4.592	+	TSC_hg19_v1_chr3_+_133293256 AK096865 NM_001134423	-46121	+	TSC_hg19_v1_chr3_+_133292835 BC007338	-46605	+	TSC_hg19_v1_chr3_+_133292588 AF103803	-46827	+	BC126209 TSC_hg19_v1_chr3_-_133380768 AB019397 BC151237 D87448 AK302584 BC032633 NM_007027	41299	-	AJ252279 NM_001063 TSC_hg19_v1_chr3_+_133465083	125584	+	BC045772 TSC_hg19_v1_chr3_+_133465111	125712	+	AK096865|CDV3|55573|CDV3 homolog (mouse)##NM_001134423|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC126209|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AB019397|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##BC151237|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##D87448|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AK302584|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##BC032633|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##NM_007027|TOPBP1|11073|topoisomerase (DNA) II binding protein 1##AJ252279|TF|7018|transferrin##NM_001063|TF|7018|transferrin##BC045772|TF|7018|transferrin	0.999212	0.0	denovo_WM_7:29:0.239	denovo_WM_7:30:0.239	denovo_WM_7:31:0.239	denovo_WM_7:32:0.239
chr6	34630088	34630195	reg1006781.p1	4.592	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-106045	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-147487	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-196237	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	34405	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	34485	-	NM_003093	94729	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	1.901307	0.0	denovo_WM_7:-34:0.253	denovo_WM_7:-35:0.572	denovo_WM_7:-51:0.827
chr8	8745292	8745451	reg1007897.p1	4.592	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	-185673	+	AK122582 NM_001080826	-506149	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-569483	-	TSC_hg19_v1_chr8_-_8751060 NM_004225	5567	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	114994	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	115134	+	AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1	1.045369	0.0	denovo_WM_7:7:0.204	denovo_WM_7:8:0.205	denovo_WM_7:9:0.209
chrX	19553718	19553837	reg1012430.p1	4.592	+	NM_001001671	-20399	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-191695	+	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	-413110	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	135279	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	264098	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	264135	-	NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.715584	0.360988	CTCF.p2:9:0.361
chr10	112306990	112307164	reg1011271.p1	4.591	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	-49326	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-242377	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-242484	-	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	20415	+	AF067163 TSC_hg19_v1_chr10_+_112344155	37038	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	97052	+	NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20	0.648727	0.997739	CTCF.p2:37:0.998	denovo_WM_7:-52:0.567
chr4	88421000	88421128	reg1008991.p1	4.591	+	TSC_hg19_v1_chr4_+_88343781 NM_001248011 NM_024047 AK027295 AK074845 NM_198038 AF265341 AF273028 AK075408 AK308028 BC000542 AY359123 CU674266	-77185	+	TSC_hg19_v1_chr4_-_88312341 AK075348 BC008650 BC036001 BC016367 BC011995 NM_016245	-108673	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	-108793	-	AK316533 AY513278 AK300956 BC010383 AK294335 BC022484 AK298039 X82157 BX647713 AL833430 AK304628 BC033721 X86693 AK304494 TSC_hg19_v1_chr4_-_88450525	29322	-	TSC_hg19_v1_chr4_-_88450604 NM_001128310 NM_004684	29563	-	NM_014208	108616	+	NM_001248011|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##NM_024047|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK027295|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK074845|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##NM_198038|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AF265341|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AF273028|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK075408|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK308028|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##BC000542|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AY359123|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK075348|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC008650|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC036001|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC016367|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC011995|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##NM_016245|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AK316533|SPARCL1|8404|SPARC-like 1 (hevin)##AY513278|SPARCL1|8404|SPARC-like 1 (hevin)##AK300956|SPARCL1|8404|SPARC-like 1 (hevin)##BC010383|SPARCL1|8404|SPARC-like 1 (hevin)##AK294335|SPARCL1|8404|SPARC-like 1 (hevin)##BC022484|SPARCL1|8404|SPARC-like 1 (hevin)##AK298039|SPARCL1|8404|SPARC-like 1 (hevin)##X82157|SPARCL1|8404|SPARC-like 1 (hevin)##BX647713|SPARCL1|8404|SPARC-like 1 (hevin)##AL833430|SPARCL1|8404|SPARC-like 1 (hevin)##AK304628|SPARCL1|8404|SPARC-like 1 (hevin)##BC033721|SPARCL1|8404|SPARC-like 1 (hevin)##X86693|SPARCL1|8404|SPARC-like 1 (hevin)##AK304494|SPARCL1|8404|SPARC-like 1 (hevin)##NM_001128310|SPARCL1|8404|SPARC-like 1 (hevin)##NM_004684|SPARCL1|8404|SPARC-like 1 (hevin)##NM_014208|DSPP|1834|dentin sialophosphoprotein	0.374861	0.0	denovo_WM_7:-13:0.328
chr6	43192419	43192599	reg1013242.p1	4.591	+	TSC_hg19_v1_chr6_+_43149926 BC028159	-42572	+	TSC_hg19_v1_chr6_+_43149918 AK125228 CR749511 NM_015089 CR749841	-42595	+	TSC_hg19_v1_chr6_+_43139204 AB209128 AB464198	-53216	+	TSC_hg19_v1_chr6_-_43197220 BC011683 AF040105 NM_006443 NM_199184 EU585603	4690	-	NM_032538 TSC_hg19_v1_chr6_+_43211227	18719	+	TSC_hg19_v1_chr6_+_43265994 NM_006672 NM_153320 AF097518	73488	+	BC028159|CUL9|23113|cullin 9##AK125228|CUL9|23113|cullin 9##CR749511|CUL9|23113|cullin 9##NM_015089|CUL9|23113|cullin 9##CR749841|CUL9|23113|cullin 9##AB209128|SRF|6722|serum response factor (c-fos serum response element-binding transcription factor)##BC011683|C6orf108|10591|chromosome 6 open reading frame 108##AF040105|C6orf108|10591|chromosome 6 open reading frame 108##NM_006443|C6orf108|10591|chromosome 6 open reading frame 108##NM_199184|C6orf108|10591|chromosome 6 open reading frame 108##EU585603|C6orf108|10591|chromosome 6 open reading frame 108##NM_032538|TTBK1|84630|tau tubulin kinase 1##NM_006672|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##NM_153320|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF097518|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7	0.977142	0.0	denovo_WM_7:90:0.896
chr11	61566556	61566733	reg1011359.p1	4.590	+	TSC_hg19_v1_chr11_+_61560405 AK312761	-6240	+	TSC_hg19_v1_chr11_+_61560382 AK301743 BC000323	-6272	+	NM_004111 X76771	-6516	+	CU675827 AF199596 AF226273 DQ890643 DQ893822 AK027427 BC007846 TSC_hg19_v1_chr11_-_61584328 AK222906 AF084558 AL512760 AK314199 AK027522	17657	-	AK074754 AK074819 TSC_hg19_v1_chr11_-_61584464 NM_013402	17845	-	TSC_hg19_v1_chr11_+_61595676 AF084559 NM_004265	29057	+	AK312761|FEN1|2237|flap structure-specific endonuclease 1##AK301743|FEN1|2237|flap structure-specific endonuclease 1##BC000323|FEN1|2237|flap structure-specific endonuclease 1##NM_004111|FEN1|2237|flap structure-specific endonuclease 1##X76771|FEN1|2237|flap structure-specific endonuclease 1##AF199596|FADS1|3992|fatty acid desaturase 1##AF226273|FADS1|3992|fatty acid desaturase 1##DQ890643|FADS1|3992|fatty acid desaturase 1##DQ893822|FADS1|3992|fatty acid desaturase 1##AK027427|FADS1|3992|fatty acid desaturase 1##BC007846|FADS1|3992|fatty acid desaturase 1##AK222906|FADS1|3992|fatty acid desaturase 1##AF084558|FADS1|3992|fatty acid desaturase 1##AL512760|FADS1|3992|fatty acid desaturase 1##AK314199|FADS1|3992|fatty acid desaturase 1##AK027522|FADS1|3992|fatty acid desaturase 1##AK074754|FADS1|3992|fatty acid desaturase 1##AK074819|FADS1|3992|fatty acid desaturase 1##NM_013402|FADS1|3992|fatty acid desaturase 1##AF084559|FADS2|9415|fatty acid desaturase 2##NM_004265|FADS2|9415|fatty acid desaturase 2	1.993068	0.0	denovo_WM_7:-27:0.221	denovo_WM_7:-49:0.221
chr15	26020378	26020558	reg1010789.p2	4.590	+	TSC_hg19_v1_chr15_-_25684163 NM_000462 NM_130839 AF002224	-336290	-	TSC_hg19_v1_chr15_-_25684136 BC002582 AK056239	-336367	-	L07557 NM_130838	-369819	-	TSC_hg19_v1_chr15_-_26108463 EU831492 EU831579 NM_024490 BC052251	87885	-	AB051358 TSC_hg19_v1_chr15_-_26108932	88432	-	AK295167 NM_001191321 TSC_hg19_v1_chr15_-_26874238 BC038837	853812	-	NM_000462|UBE3A|7337|ubiquitin protein ligase E3A##NM_130839|UBE3A|7337|ubiquitin protein ligase E3A##AF002224|UBE3A|7337|ubiquitin protein ligase E3A##BC002582|UBE3A|7337|ubiquitin protein ligase E3A##AK056239|UBE3A|7337|ubiquitin protein ligase E3A##L07557|UBE3A|7337|ubiquitin protein ligase E3A##NM_130838|UBE3A|7337|ubiquitin protein ligase E3A##EU831492|ATP10A|57194|ATPase, class V, type 10A##EU831579|ATP10A|57194|ATPase, class V, type 10A##NM_024490|ATP10A|57194|ATPase, class V, type 10A##BC052251|ATP10A|57194|ATPase, class V, type 10A##AB051358|ATP10A|57194|ATPase, class V, type 10A##AK295167|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3##NM_001191321|GABRB3|2562|gamma-aminobutyric acid (GABA) A receptor, beta 3	0.0	0.0	
chr16	22062189	22062327	reg1015393.p1	4.590	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-42770	+	BC039562 BC021724 BC028605 NM_173806	-49830	-	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	-97537	+	AK098260 AK128606 AK307544 NM_173615	41603	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	155415	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	246490	+	NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##BC039562|PDZD9|255762|PDZ domain containing 9##BC021724|PDZD9|255762|PDZ domain containing 9##BC028605|PDZD9|255762|PDZ domain containing 9##NM_173806|PDZD9|255762|PDZ domain containing 9##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)	0.995424	0.0	denovo_WM_7:-38:0.230	denovo_WM_7:-39:0.230	denovo_WM_7:-40:0.230	denovo_WM_7:-41:0.230
chr1	12148008	12148152	reg1007673.p2	4.589	+	M83554 NM_001243 BC136400 BC171762 S75768	-24536	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-68510	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-68546	+	D86042 BC063482 NM_152942 BC073839 BC141804	37936	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	78981	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	79031	+	M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.905915	0.0	denovo_WM_7:-43:0.860
chr12	123942837	123942922	reg1000637.p2	4.589	+	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	-176	+	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	-21638	-	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	-21867	-	BC093671 BC111955 NM_180699	1506	+	BC089444 TSC_hg19_v1_chr12_-_124018263 NM_178314	75295	-	TSC_hg19_v1_chr12_-_124018501 AK096697	75618	-	NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC093671|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC111955|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##NM_180699|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC089444|RILPL1|353116|Rab interacting lysosomal protein-like 1##NM_178314|RILPL1|353116|Rab interacting lysosomal protein-like 1##AK096697|RILPL1|353116|Rab interacting lysosomal protein-like 1	0.0	0.0	
chr12	1715419	1715557	reg1010866.p1	4.589	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	-12137	-	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-615036	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-656662	-	AY009399 NM_030775	10733	+	BC001749 NM_032642	22923	+	AK127196 TSC_hg19_v1_chr12_+_1800187	84678	+	BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B##AK127196|ADIPOR2|79602|adiponectin receptor 2	0.0	0.0	
chr15	101816469	101816590	reg1007413.p1	4.589	+	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	-24394	-	AB071402 TSC_hg19_v1_chr15_-_101791795	-24793	-	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-357017	+	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	1134	-	TSC_hg19_v1_chr15_-_101835402 AB528428 CU692724 AJ130971 AJ130972 DQ892838 DQ896084 BC071717	18852	-	TSC_hg19_v1_chr15_-_101835457 AK223110 AK312200 X13482 BC022816 AK290078 AK223070 BC067846 NM_003090	18902	-	BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S##AJ130971|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AJ130972|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ892838|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##DQ896084|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC071717|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223110|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK312200|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##X13482|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC022816|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK290078|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##AK223070|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##BC067846|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'##NM_003090|SNRPA1|6627|small nuclear ribonucleoprotein polypeptide A'	1.995893	0.0	denovo_WM_7:98:0.869
chr6	119472386	119472545	reg1013115.p1	4.589	+	BX538186 AK091682 AX747126 NM_001100411	-2119	-	TSC_hg19_v1_chr6_-_119399821 BC060769 NM_024581 AK308316	-72557	-	CU687406 AB385245 EU832813 GQ129264 TSC_hg19_v1_chr6_-_119399478	-73041	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	198456	-	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	2183178	-	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	2284360	+	BX538186|FAM184A|79632|family with sequence similarity 184, member A##AK091682|FAM184A|79632|family with sequence similarity 184, member A##NM_001100411|FAM184A|79632|family with sequence similarity 184, member A##BC060769|FAM184A|79632|family with sequence similarity 184, member A##NM_024581|FAM184A|79632|family with sequence similarity 184, member A##AK308316|FAM184A|79632|family with sequence similarity 184, member A##EU832813|FAM184A|79632|family with sequence similarity 184, member A##GQ129264|FAM184A|79632|family with sequence similarity 184, member A##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa	0.480329	0.0	denovo_WM_7:-33:0.304
chrX	9615207	9615314	reg1013362.p1	4.589	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	-182026	+	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	-183913	+	BC120955 BC120956 NM_205849	-614158	-	Z48804 BC015657 BC068977 NM_000273	118700	-	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	139220	+	BC140866 TSC_hg19_v1_chrX_+_9754543	139283	+	Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##BC140866|SHROOM2|357|shroom family member 2	0.0	0.0	
chr11	9648557	9648737	reg1006904.p1	4.588	+	AK122837 NM_001143976	-52414	+	TSC_hg19_v1_chr11_+_9595453 AB384747 EU832325 EU832410	-53180	+	BC051831 TSC_hg19_v1_chr11_+_9595437	-53214	+	TSC_hg19_v1_chr11_+_9685623 AK096859	36967	+	TSC_hg19_v1_chr11_+_9685627 NM_015055	36989	+	BC000616 TSC_hg19_v1_chr11_+_9685651 AF134894	37004	+	AK122837|WEE1|7465|WEE1 homolog (S. pombe)##NM_001143976|WEE1|7465|WEE1 homolog (S. pombe)##EU832325|WEE1|7465|WEE1 homolog (S. pombe)##EU832410|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)##AK096859|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##NM_015055|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##BC000616|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AF134894|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit	0.0	0.0	
chr16	69865611	69865791	reg1013642.p2	4.588	+	TSC_hg19_v1_chr16_+_69796265 BC064531 AJ001982 NM_007014 NM_199423 U96114	-69445	+	TSC_hg19_v1_chr16_+_69796208 AK312792	-69513	+	AF190161 TSC_hg19_v1_chr16_-_69788828 BC064630 CU687926 AK314307 AK001028 AB026125 NM_014062 AY487344	-76878	-	AK126332 NM_199424 TSC_hg19_v1_chr16_+_69958904	93201	+	BC078143 NM_001136214	118924	+	AF521893 NM_182619 BC141808 AF428259 AF448856 AL833339 AK289884 AK298310 AK074773 EU831776 EU831854 CU687316 AK096051	119391	+	BC064531|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AJ001982|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_007014|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_199423|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##U96114|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AK312792|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AF190161|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##BC064630|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AK314307|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AK001028|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AB026125|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##NM_014062|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AY487344|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AK126332|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_199424|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##BC078143|CLEC18A|348174|C-type lectin domain family 18, member A##NM_001136214|CLEC18A|348174|C-type lectin domain family 18, member A##AF521893|CLEC18A|348174|C-type lectin domain family 18, member A##NM_182619|CLEC18A|348174|C-type lectin domain family 18, member A##BC141808|CLEC18A|348174|C-type lectin domain family 18, member A##AF428259|CLEC18A|348174|C-type lectin domain family 18, member A##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK289884|CLEC18A|348174|C-type lectin domain family 18, member A##AK298310|CLEC18A|348174|C-type lectin domain family 18, member A##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##EU831776|CLEC18A|348174|C-type lectin domain family 18, member A##EU831854|CLEC18A|348174|C-type lectin domain family 18, member A##AK096051|CLEC18A|348174|C-type lectin domain family 18, member A	1.044963	0.0	
chr5	64040941	64041086	reg1012407.p1	4.588	+	NM_001164442 TSC_hg19_v1_chr5_+_63986235	-54828	+	BC140707 NM_001029875 BX640900	-238532	+	TSC_hg19_v1_chr5_+_63461666 AK090756 AX746601 NM_001113561 NM_178532 BC101277 BC101278 BC101279 AL832580 BC101397	-579332	+	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	23433	-	TSC_hg19_v1_chr5_-_64064491 AK094073 AX748442 NM_173829	23491	-	BX647971 TSC_hg19_v1_chr5_+_64064766 NM_005869 AK225161 AK225105 AK308223 AK312954 AY358569 AF039692 BC012117	23771	+	NM_001164442|FAM159B|100132916|family with sequence similarity 159, member B##BC140707|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##NM_001029875|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##BX640900|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##AK090756|RNF180|285671|ring finger protein 180##NM_001113561|RNF180|285671|ring finger protein 180##NM_178532|RNF180|285671|ring finger protein 180##BC101277|RNF180|285671|ring finger protein 180##BC101278|RNF180|285671|ring finger protein 180##BC101279|RNF180|285671|ring finger protein 180##AL832580|RNF180|285671|ring finger protein 180##BC101397|RNF180|285671|ring finger protein 180##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1##AK094073|SREK1IP1|285672|SREK1-interacting protein 1##NM_173829|SREK1IP1|285672|SREK1-interacting protein 1##BX647971|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##NM_005869|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225161|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225105|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK308223|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK312954|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AY358569|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AF039692|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##BC012117|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	0.0	0.0	
chr12	8828901	8828976	reg1001534.p3	4.587	+	AK124368 TSC_hg19_v1_chr12_-_8815486	-13456	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	-13537	-	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	-13642	-	TSC_hg19_v1_chr12_+_8850570 AK302847 NM_020734 BC006368	21666	+	NM_144670 AK122624 AK290355 AL832139 BX648231	146244	+	TSC_hg19_v1_chr12_+_9067153 AB209063 AK293893 NM_004426 BC073964 U89277 BC157850	238331	+	AK124368|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##AK302847|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_020734|RIMKLB|57494|ribosomal modification protein rimK-like family member B##BC006368|RIMKLB|57494|ribosomal modification protein rimK-like family member B##NM_144670|A2ML1|144568|alpha-2-macroglobulin-like 1##AK122624|A2ML1|144568|alpha-2-macroglobulin-like 1##AK290355|A2ML1|144568|alpha-2-macroglobulin-like 1##AL832139|A2ML1|144568|alpha-2-macroglobulin-like 1##BX648231|A2ML1|144568|alpha-2-macroglobulin-like 1##AB209063|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##AK293893|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##NM_004426|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC073964|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##U89277|PHC1|1911|polyhomeotic homolog 1 (Drosophila)##BC157850|PHC1|1911|polyhomeotic homolog 1 (Drosophila)	2.220844	0.0	denovo_WM_7:48:0.310	denovo_WM_7:49:0.248	denovo_WM_7:66:0.259	denovo_WM_7:67:0.321	denovo_WM_7:-94:0.222
chr1	47919758	47919824	reg1016461.p1	4.587	+	AF042832 NM_004474	-18103	+	AF275722 NM_012186	-38048	+	TSC_hg19_v1_chr1_+_47799646 AF259961	-120150	+	NM_001194986	542770	-	BC104857 BC104863 BC143570 BC143587 NM_001011547 NM_001135181 BC143572 TSC_hg19_v1_chr1_+_48688387 BC048332 AK131200 BX648549 AK296133	768601	+	TSC_hg19_v1_chr1_-_48937679 CU676616 DQ892001 DQ895191 BC020660	1017887	-	AF042832|FOXD2|2306|forkhead box D2##NM_004474|FOXD2|2306|forkhead box D2##AF275722|FOXE3|2301|forkhead box E3##NM_012186|FOXE3|2301|forkhead box E3##AF259961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##NM_001194986|LOC388630|388630|UPF0632 protein A##BC104857|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC104863|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143570|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143587|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001011547|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001135181|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143572|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC048332|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK131200|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BX648549|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK296133|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##DQ892001|SPATA6|54558|spermatogenesis associated 6##DQ895191|SPATA6|54558|spermatogenesis associated 6##BC020660|SPATA6|54558|spermatogenesis associated 6	0.0	0.0	
chr15	86328774	86328917	reg1010889.p2	4.587	+	AF127481 NM_144767	-108578	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	-404954	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-662527	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	9252	-	TSC_hg19_v1_chr15_-_86338178 NM_022480	9350	-	NM_152336	356396	+	NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)##NM_022480|KLHL25|64410|kelch-like 25 (Drosophila)##NM_152336|AGBL1|123624|ATP/GTP binding protein-like 1	0.995864	0.094593	denovo_WM_7:-43:0.616	denovo_WM_7:-44:0.307
chr16	23348492	23348672	reg1002264.p4	4.587	+	NM_000336 BC036352 X87159 AK313192	-34955	+	U48936 BC059391 NM_001039 TSC_hg19_v1_chr16_+_23194066	-154530	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	-188033	-	TSC_hg19_v1_chr16_-_23464487 BC000549 BC037563 NM_153603	115913	-	TSC_hg19_v1_chr16_-_23521748 AB384559 CU674130 DQ892534 DQ895745 BC050620 AF165531	173153	-	AF190863 AF323754 AF233522 TSC_hg19_v1_chr16_-_23521769	173180	-	NM_000336|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC036352|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##X87159|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##AK313192|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##U48936|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##BC059391|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##NM_001039|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31##BC000549|COG7|91949|component of oligomeric golgi complex 7##BC037563|COG7|91949|component of oligomeric golgi complex 7##NM_153603|COG7|91949|component of oligomeric golgi complex 7##DQ892534|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##DQ895745|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##BC050620|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF165531|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF190863|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF323754|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF233522|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2	0.0	0.0	
chr5	116558071	116558185	reg1011413.p1	4.587	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-647614	-	TSC_hg19_v1_chr5_+_115898220 D28352	-659904	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-1137407	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	1766110	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	1848683	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	1849037	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	2.989743	0.0	denovo_WM_7:-52:0.491	denovo_WM_7:-53:0.295	denovo_WM_7:-67:0.201	denovo_WM_7:-68:0.298	denovo_WM_7:-69:0.297	denovo_WM_7:-84:0.299	denovo_WM_7:-85:0.496
chr6	42742541	42742690	reg1010816.p1	4.587	+	TSC_hg19_v1_chr6_+_42714735 D87077	-27872	+	TSC_hg19_v1_chr6_-_42714549 BC017479	-28063	-	TSC_hg19_v1_chr6_-_42713837 NM_003192	-28740	-	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	7082	+	TSC_hg19_v1_chr6_+_42750789 AK096036	8046	+	TSC_hg19_v1_chr6_+_42751233 AK098234	8626	+	D87077|KIAA0240|23506|KIAA0240##BC017479|TBCC|6903|tubulin folding cofactor C##NM_003192|TBCC|6903|tubulin folding cofactor C##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##AK096036|FLJ38717|401261|FLJ38717 protein##AK098234|FLJ38717|401261|FLJ38717 protein	1.342381	0.0	denovo_WM_7:-38:0.561	denovo_WM_7:-39:0.305
chr6_mcf_hap5	4754443	4754573	reg1010550.p1	4.587	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998245	0.0	denovo_WM_7:31:0.266	denovo_WM_7:34:0.420
chr8	101450764	101450878	reg1013353.p2	4.587	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-128536	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-128640	-	AB271913 AB271914 AB029316 NM_015435	-135350	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	121119	-	AK093906 AX748361 NM_152628	211071	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	282985	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	0.99591	0.0	
chr19	13219706	13219790	reg1008587.p1	4.586	+	NM_005583	-5775	-	TSC_hg19_v1_chr19_-_13213673 BC002796	-6051	-	TSC_hg19_v1_chr19_-_13213530 AK311530 M22637	-6222	-	AF196479 AB590553 CU676232 CU677996 BC002492 BC040126 BC018302 NM_001142554 NM_017722 TSC_hg19_v1_chr19_-_13227551 AK000251 AK304636 AK295245 AK292377 NM_001136035	7645	-	TSC_hg19_v1_chr19_+_13229102 NM_052876 BC055396 AF395817	9377	+	TSC_hg19_v1_chr19_+_13250072 AK123056	30369	+	NM_005583|LYL1|4066|lymphoblastic leukemia derived sequence 1##BC002796|LYL1|4066|lymphoblastic leukemia derived sequence 1##M22637|LYL1|4066|lymphoblastic leukemia derived sequence 1##AF196479|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##BC002492|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##BC040126|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##BC018302|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_001142554|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_017722|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK000251|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK304636|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK295245|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##AK292377|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_001136035|TRMT1|55621|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)##NM_052876|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing##BC055396|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing##AF395817|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing##AK123056|NACC1|112939|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	0.997782	0.0	
chr5	150883644	150883793	reg1015277.p2	4.586	+	TSC_hg19_v1_chr5_+_150827239 AY162213 BC136437 BC136438	-56474	+	AK309323 TSC_hg19_v1_chr5_+_150827187	-56529	+	TSC_hg19_v1_chr5_+_150827163 NM_078483 BX537963 AY227111	-56558	+	AF231022 NM_001447	64786	-	Y00755 BC004974 J03040 TSC_hg19_v1_chr5_-_151066477	182743	-	TSC_hg19_v1_chr5_-_151066495 AK096969 AK299441 AK315591 D28381 BC072457 NM_003118	182790	-	AY162213|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BC136437|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BC136438|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AK309323|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##NM_078483|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BX537963|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AY227111|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AF231022|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##NM_001447|FAT2|2196|FAT tumor suppressor homolog 2 (Drosophila)##Y00755|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC004974|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##J03040|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK096969|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK299441|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##AK315591|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##D28381|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##BC072457|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)##NM_003118|SPARC|6678|secreted protein, acidic, cysteine-rich (osteonectin)	0.0	0.0	
chr10	100435916	100436046	reg1003477.p2	4.585	+	TSC_hg19_v1_chr10_-_100206705 NM_000195 NM_182639	-229270	-	TSC_hg19_v1_chr10_-_100206661 U65676 BC000175 AK295821 U96721	-229306	-	BC002514 TSC_hg19_v1_chr10_-_100206650	-229335	-	AJ299720 AK094037 BC112356 AF282885 AF282886 AF282887 AJ299719 AK314759 NM_001166244 NM_001166245 NM_001166246 NM_021828	559613	-	TSC_hg19_v1_chr10_+_101088794 NM_020348	652843	+	TSC_hg19_v1_chr10_+_101089114 AK308618	653145	+	NM_000195|HPS1|3257|Hermansky-Pudlak syndrome 1##NM_182639|HPS1|3257|Hermansky-Pudlak syndrome 1##U65676|HPS1|3257|Hermansky-Pudlak syndrome 1##BC000175|HPS1|3257|Hermansky-Pudlak syndrome 1##AK295821|HPS1|3257|Hermansky-Pudlak syndrome 1##U96721|HPS1|3257|Hermansky-Pudlak syndrome 1##BC002514|HPS1|3257|Hermansky-Pudlak syndrome 1##AJ299720|HPSE2|60495|heparanase 2##AK094037|HPSE2|60495|heparanase 2##BC112356|HPSE2|60495|heparanase 2##AF282885|HPSE2|60495|heparanase 2##AF282886|HPSE2|60495|heparanase 2##AF282887|HPSE2|60495|heparanase 2##AJ299719|HPSE2|60495|heparanase 2##AK314759|HPSE2|60495|heparanase 2##NM_001166244|HPSE2|60495|heparanase 2##NM_001166245|HPSE2|60495|heparanase 2##NM_001166246|HPSE2|60495|heparanase 2##NM_021828|HPSE2|60495|heparanase 2##NM_020348|CNNM1|26507|cyclin M1##AK308618|CNNM1|26507|cyclin M1	0.0	0.0	
chr11	47573524	47573660	reg1012131.p1	4.585	+	AB210019 NM_001172639	-28053	-	BC031079 NM_198700	-57520	-	AK304430 AJ007988 DQ893717 AF248648 NM_001025596 NM_001172640 AF267533 AF267534	-63045	-	TSC_hg19_v1_chr11_-_47574683 BC036782 U63289	1051	-	TSC_hg19_v1_chr11_-_47574804 NM_006560	1193	-	AK127967 BC073798 NM_001143984 NM_175732	13342	+	AB210019|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172639|CELF1|10658|CUGBP, Elav-like family member 1##BC031079|CELF1|10658|CUGBP, Elav-like family member 1##NM_198700|CELF1|10658|CUGBP, Elav-like family member 1##AK304430|CELF1|10658|CUGBP, Elav-like family member 1##AJ007988|CELF1|10658|CUGBP, Elav-like family member 1##DQ893717|CELF1|10658|CUGBP, Elav-like family member 1##AF248648|CELF1|10658|CUGBP, Elav-like family member 1##NM_001025596|CELF1|10658|CUGBP, Elav-like family member 1##NM_001172640|CELF1|10658|CUGBP, Elav-like family member 1##AF267533|CELF1|10658|CUGBP, Elav-like family member 1##AF267534|CELF1|10658|CUGBP, Elav-like family member 1##BC036782|CELF1|10658|CUGBP, Elav-like family member 1##U63289|CELF1|10658|CUGBP, Elav-like family member 1##NM_006560|CELF1|10658|CUGBP, Elav-like family member 1##BC073798|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##NM_001143984|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##NM_175732|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1	0.991727	0.0	denovo_WM_7:-15:0.228	denovo_WM_7:-16:0.228	denovo_WM_7:-17:0.228	denovo_WM_7:-18:0.228
chr14	61870119	61870264	reg1011987.p1	4.585	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-81664	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-121669	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-121997	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	291999	+	FJ790247 NM_001243084	294148	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	358928	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.091607	0.0	
chr2	20293552	20293653	reg1011011.p1	4.585	+	NM_014713	-41814	-	TSC_hg19_v1_chr2_-_20251415 AY359028 D14696 BC003158 AK129875	-42175	-	CR456758 TSC_hg19_v1_chr2_-_20251382 BC000421 AK304433 BC093075	-42264	-	X60306 AB464260 CU679093 DQ893265 DQ896595 TSC_hg19_v1_chr2_-_20424892 AK299385 J05392 AK313974 AK222739 BC008765 AJ551176 AK311409 NM_002997	131185	-	TSC_hg19_v1_chr2_-_20425168 NM_001006946	131577	-	AF272350 TSC_hg19_v1_chr2_-_20512079	218447	-	NM_014713|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AY359028|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##D14696|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC003158|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK129875|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##CR456758|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC000421|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK304433|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC093075|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##X60306|SDC1|6382|syndecan 1##DQ893265|SDC1|6382|syndecan 1##DQ896595|SDC1|6382|syndecan 1##AK299385|SDC1|6382|syndecan 1##J05392|SDC1|6382|syndecan 1##AK313974|SDC1|6382|syndecan 1##AK222739|SDC1|6382|syndecan 1##BC008765|SDC1|6382|syndecan 1##AJ551176|SDC1|6382|syndecan 1##NM_002997|SDC1|6382|syndecan 1##NM_001006946|SDC1|6382|syndecan 1##AF272350|PUM2|23369|pumilio homolog 2 (Drosophila)	0.886011	0.263742	CTCF.p2:-24:0.264	denovo_WM_7:-64:0.849
chr2	24809361	24809541	reg1000877.p2	4.585	+	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	-2074	+	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	-225971	-	BC050462 NM_001040710	-411480	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	206787	-	NM_001199803 AK027859 TSC_hg19_v1_chr2_+_25016332 NM_024322 BC002870 AK315483	206820	+	HQ258684 AK027857 BC126235 BC144119 AF033861 NM_004036 AK122926	332506	-	NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001199803|CENPO|79172|centromere protein O##AK027859|CENPO|79172|centromere protein O##NM_024322|CENPO|79172|centromere protein O##BC002870|CENPO|79172|centromere protein O##AK315483|CENPO|79172|centromere protein O##HQ258684|ADCY3|109|adenylate cyclase 3##AK027857|ADCY3|109|adenylate cyclase 3##BC126235|ADCY3|109|adenylate cyclase 3##BC144119|ADCY3|109|adenylate cyclase 3##AF033861|ADCY3|109|adenylate cyclase 3##NM_004036|ADCY3|109|adenylate cyclase 3##AK122926|ADCY3|109|adenylate cyclase 3	0.928232	0.0	denovo_WM_7:40:0.219	denovo_WM_7:44:0.418
chr3	129118821	129118897	reg1008227.p1	4.585	+	TSC_hg19_v1_chr3_-_129118263 BC053996 AK093477	-596	-	TSC_hg19_v1_chr3_-_129035130 BC000426 NM_006026	-83759	-	TSC_hg19_v1_chr3_+_128997745 BC010125 BC050686 NM_001006109 BC009993	-121047	+	CU688234 AK127968 BC031104 BC066975 NM_207307	28553	-	AM180876 CR450305 CU680042 BC034463 U56254 U56428 TSC_hg19_v1_chr3_-_129158722 BC011752	39859	-	AK312878 TSC_hg19_v1_chr3_-_129158781 AF114784	39938	-	BC053996|RPL32P3|132241|ribosomal protein L32 pseudogene 3##AK093477|RPL32P3|132241|ribosomal protein L32 pseudogene 3##BC000426|H1FX|8971|H1 histone family, member X##NM_006026|H1FX|8971|H1 histone family, member X##BC010125|C3orf37|56941|chromosome 3 open reading frame 37##BC050686|C3orf37|56941|chromosome 3 open reading frame 37##NM_001006109|C3orf37|56941|chromosome 3 open reading frame 37##BC009993|C3orf37|56941|chromosome 3 open reading frame 37##AK127968|C3orf25|90288|chromosome 3 open reading frame 25##BC031104|C3orf25|90288|chromosome 3 open reading frame 25##BC066975|C3orf25|90288|chromosome 3 open reading frame 25##NM_207307|C3orf25|90288|chromosome 3 open reading frame 25##AM180876|MBD4|8930|methyl-CpG binding domain protein 4##CR450305|MBD4|8930|methyl-CpG binding domain protein 4##BC034463|MBD4|8930|methyl-CpG binding domain protein 4##BC011752|MBD4|8930|methyl-CpG binding domain protein 4##AK312878|MBD4|8930|methyl-CpG binding domain protein 4##AF114784|MBD4|8930|methyl-CpG binding domain protein 4	0.0	0.0	
chr3	183417652	183417832	reg1012802.p1	4.585	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	-2120	+	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	-64342	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	-144290	-	TSC_hg19_v1_chr3_-_183543366 BC006434 AK022810 NM_024871	125627	-	AF197937 CU678558 DQ893442 DQ896749 TSC_hg19_v1_chr3_-_183602641	184897	-	TSC_hg19_v1_chr3_-_183602648 BC014058	184909	-	AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC006434|MAP6D1|79929|MAP6 domain containing 1##AK022810|MAP6D1|79929|MAP6 domain containing 1##NM_024871|MAP6D1|79929|MAP6 domain containing 1##AF197937|PARL|55486|presenilin associated, rhomboid-like##DQ893442|PARL|55486|presenilin associated, rhomboid-like##DQ896749|PARL|55486|presenilin associated, rhomboid-like##BC014058|PARL|55486|presenilin associated, rhomboid-like	0.0	0.0	
chr3	53673789	53673961	reg1014614.p1	4.585	+	NM_000720 NM_001128839 NM_001128840 M83566 EU363339	-144764	+	TSC_hg19_v1_chr3_+_53528709 M76558	-145216	+	TSC_hg19_v1_chr3_-_53381571 AB590177 CU675659 DQ893260 DQ896589 BC007439 AK295205 AB075507 AK001969 AY146651 AJ275986 NM_018403	-292282	-	TSC_hg19_v1_chr3_-_53880427 NM_018397	206544	-	TSC_hg19_v1_chr3_+_53880576 NM_018725	206697	+	TSC_hg19_v1_chr3_+_53880594 AK307749	206720	+	NM_000720|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128839|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128840|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M83566|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##EU363339|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M76558|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##DQ893260|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##DQ896589|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##BC007439|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK295205|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AB075507|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK001969|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AY146651|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AJ275986|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018403|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018397|CHDH|55349|choline dehydrogenase##NM_018725|IL17RB|55540|interleukin 17 receptor B##AK307749|IL17RB|55540|interleukin 17 receptor B	0.999533	0.0	
chr7	49227163	49227343	reg1012229.p1	4.585	+	AK126220 AY204751 BX647273 NM_152701	-1016198	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	-1098298	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	-1098453	+	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	586017	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	905571	-	NM_001161834	908428	+	AK126220|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##AY204751|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##NM_152701|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72	0.989671	0.0	denovo_WM_7:9:0.930
chr7	87218114	87218294	reg1014714.p2	4.585	+	M23234 NM_000443 NM_018849 NM_018850 BC042531	-113190	-	TSC_hg19_v1_chr7_+_86975006 NM_001143935 NM_001243745 NM_021151 AK127901 AK313487 BC051874 BC039004 BC012483 BC019226 AF073770 AF168793	-243210	+	BT009845 CR542141 BC061927 TSC_hg19_v1_chr7_-_86974833 BC103631 AB007457 AB007458 BC002709 AK292782 AB007455 AB007456 BC068535	-243432	-	TSC_hg19_v1_chr7_-_87230197 AF016535 BC130424	12075	-	TSC_hg19_v1_chr7_+_87257708 AK055233 NM_001134405 NM_001134406 NM_138290 BC022520 AK293607 AK294039	39613	+	AF345623 AF345624 AY425005 AY425006 M14758 AF345625 AK290159 NM_000927 AY425007 AY452673	124443	-	M23234|ABCB4|5244|ATP-binding cassette, sub-family B (MDR/TAP), member 4##NM_000443|ABCB4|5244|ATP-binding cassette, sub-family B (MDR/TAP), member 4##NM_018849|ABCB4|5244|ATP-binding cassette, sub-family B (MDR/TAP), member 4##NM_018850|ABCB4|5244|ATP-binding cassette, sub-family B (MDR/TAP), member 4##BC042531|ABCB4|5244|ATP-binding cassette, sub-family B (MDR/TAP), member 4##NM_001143935|CROT|54677|carnitine O-octanoyltransferase##NM_001243745|CROT|54677|carnitine O-octanoyltransferase##NM_021151|CROT|54677|carnitine O-octanoyltransferase##AK127901|CROT|54677|carnitine O-octanoyltransferase##AK313487|CROT|54677|carnitine O-octanoyltransferase##BC051874|CROT|54677|carnitine O-octanoyltransferase##BC039004|CROT|54677|carnitine O-octanoyltransferase##BC012483|CROT|54677|carnitine O-octanoyltransferase##BC019226|CROT|54677|carnitine O-octanoyltransferase##AF073770|CROT|54677|carnitine O-octanoyltransferase##AF168793|CROT|54677|carnitine O-octanoyltransferase##BT009845|TP53TG1|11257|TP53 target 1 (non-protein coding)##CR542141|TP53TG1|11257|TP53 target 1 (non-protein coding)##BC061927|TP53TG1|11257|TP53 target 1 (non-protein coding)##BC103631|TP53TG1|11257|TP53 target 1 (non-protein coding)##AB007457|TP53TG1|11257|TP53 target 1 (non-protein coding)##AB007458|TP53TG1|11257|TP53 target 1 (non-protein coding)##BC002709|TP53TG1|11257|TP53 target 1 (non-protein coding)##AK292782|TP53TG1|11257|TP53 target 1 (non-protein coding)##AB007455|TP53TG1|11257|TP53 target 1 (non-protein coding)##AB007456|TP53TG1|11257|TP53 target 1 (non-protein coding)##BC068535|TP53TG1|11257|TP53 target 1 (non-protein coding)##AF016535|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##BC130424|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AK055233|RUNDC3B|154661|RUN domain containing 3B##NM_001134405|RUNDC3B|154661|RUN domain containing 3B##NM_001134406|RUNDC3B|154661|RUN domain containing 3B##NM_138290|RUNDC3B|154661|RUN domain containing 3B##BC022520|RUNDC3B|154661|RUN domain containing 3B##AK293607|RUNDC3B|154661|RUN domain containing 3B##AK294039|RUNDC3B|154661|RUN domain containing 3B##AY425005|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AY425006|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##M14758|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AF345625|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AK290159|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##NM_000927|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AY425007|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1	0.018446	0.0	
chr8	77912061	77912239	reg1000377.p1	4.585	+	AK131399 TSC_hg19_v1_chr8_+_77765961	-146261	+	AB083343 TSC_hg19_v1_chr8_+_77593533	-318622	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	-318640	+	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	259	-	NM_001172086 NM_001172087	1129	-	NM_006823 NM_181839 S76965	1516185	+	AK131399|ZFHX4|79776|zinc finger homeobox 4##AB083343|ZFHX4|79776|zinc finger homeobox 4##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha	0.010017	0.0	
chr12	121124647	121124713	reg1013423.p2	4.584	+	AF169148 AF169149 NM_004276 NM_031205	-36310	+	BC030201 NM_001033677	-46259	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	-105492	-	TSC_hg19_v1_chr12_+_121124951 NM_014730	258	+	TSC_hg19_v1_chr12_+_121124973 D63486 BC016297 BC000371	359	+	CR936818 TSC_hg19_v1_chr12_+_121132759	8038	+	AF169148|CABP1|9478|calcium binding protein 1##AF169149|CABP1|9478|calcium binding protein 1##NM_004276|CABP1|9478|calcium binding protein 1##NM_031205|CABP1|9478|calcium binding protein 1##BC030201|CABP1|9478|calcium binding protein 1##NM_001033677|CABP1|9478|calcium binding protein 1##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_014730|MLEC|9761|malectin##D63486|MLEC|9761|malectin##BC016297|MLEC|9761|malectin##BC000371|MLEC|9761|malectin	0.0	0.0	
chr13	50422193	50422292	reg1011190.p1	4.584	+	TSC_hg19_v1_chr13_-_50367200 BC035090 NM_002267	-55119	-	TSC_hg19_v1_chr13_-_50366705 AK290528	-55507	-	TSC_hg19_v1_chr13_-_50366675 AF034756 DQ892644 DQ895882 AB528414 AF005263 Y12394 BC017355 BC024202 AK291000 AK223480	-55625	-	TSC_hg19_v1_chr13_-_50510444 AF052154 AF055016 BC022519 AK316576 BC007076 AK308818 AF334405 AK290576 NM_001127482 NM_020456	88275	-	TSC_hg19_v1_chr13_+_50571212 NM_001007278 NM_005798 NM_052811 NM_213590 AY455758 AY764035 AK314496 AF241850 BC029514 AY191002 BC003579 BC063407 AF220127 AL360196	148938	+	AY169387 AY169388 NM_173605 NM_199464 AK313401 AY129654 AY129653 BC020887 BC032343 AY190921 AY190922 AL832695 CU689344 DQ891601 DQ894796	167267	+	BC035090|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##NM_002267|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##AK290528|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##AF034756|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##DQ892644|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##DQ895882|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##AF005263|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##Y12394|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##BC017355|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##BC024202|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##AK291000|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##AK223480|KPNA3|3839|karyopherin alpha 3 (importin alpha 4)##AF052154|SPRYD7|57213|SPRY domain containing 7##AF055016|SPRYD7|57213|SPRY domain containing 7##BC022519|SPRYD7|57213|SPRY domain containing 7##AK316576|SPRYD7|57213|SPRY domain containing 7##BC007076|SPRYD7|57213|SPRY domain containing 7##AK308818|SPRYD7|57213|SPRY domain containing 7##AF334405|SPRYD7|57213|SPRY domain containing 7##AK290576|SPRYD7|57213|SPRY domain containing 7##NM_001127482|SPRYD7|57213|SPRY domain containing 7##NM_020456|SPRYD7|57213|SPRY domain containing 7##NM_001007278|TRIM13|10206|tripartite motif containing 13##NM_005798|TRIM13|10206|tripartite motif containing 13##NM_052811|TRIM13|10206|tripartite motif containing 13##NM_213590|TRIM13|10206|tripartite motif containing 13##AY455758|TRIM13|10206|tripartite motif containing 13##AY764035|TRIM13|10206|tripartite motif containing 13##AK314496|TRIM13|10206|tripartite motif containing 13##AF241850|TRIM13|10206|tripartite motif containing 13##BC029514|TRIM13|10206|tripartite motif containing 13##AY191002|TRIM13|10206|tripartite motif containing 13##BC003579|TRIM13|10206|tripartite motif containing 13##BC063407|TRIM13|10206|tripartite motif containing 13##AF220127|TRIM13|10206|tripartite motif containing 13##AL360196|TRIM13|10206|tripartite motif containing 13##AY169387|KCNRG|283518|potassium channel regulator##AY169388|KCNRG|283518|potassium channel regulator##NM_173605|KCNRG|283518|potassium channel regulator##NM_199464|KCNRG|283518|potassium channel regulator##AK313401|KCNRG|283518|potassium channel regulator##AY129654|KCNRG|283518|potassium channel regulator##AY129653|KCNRG|283518|potassium channel regulator##BC020887|KCNRG|283518|potassium channel regulator##BC032343|KCNRG|283518|potassium channel regulator##AY190921|KCNRG|283518|potassium channel regulator##AY190922|KCNRG|283518|potassium channel regulator##AL832695|TRIM13|10206|tripartite motif containing 13##DQ891601|KCNRG|283518|potassium channel regulator##DQ894796|KCNRG|283518|potassium channel regulator	0.0	0.983943	CTCF.p2:50:0.984
chr3	10207295	10207431	reg1010640.p2	4.584	+	NM_001570 BC125184 AK299033 AK312841 TSC_hg19_v1_chr3_+_10206602 AF026273 AB587544 AJ496794	-763	+	TSC_hg19_v1_chr3_+_10183517 AB528056	-23825	+	AK304002 TSC_hg19_v1_chr3_+_10183487	-23865	+	TSC_hg19_v1_chr3_+_10290182 NM_014760	82812	+	TSC_hg19_v1_chr3_+_10290210 D86972	82899	+	TSC_hg19_v1_chr3_+_10290370 AK289794 BC090935 BC101776 BC101770	83159	+	NM_001570|IRAK2|3656|interleukin-1 receptor-associated kinase 2##BC125184|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK299033|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK312841|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AF026273|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AJ496794|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK304002|VHL|7428|von Hippel-Lindau tumor suppressor##NM_014760|TATDN2|9797|TatD DNase domain containing 2##D86972|TATDN2|9797|TatD DNase domain containing 2##AK289794|TATDN2|9797|TatD DNase domain containing 2##BC090935|TATDN2|9797|TatD DNase domain containing 2##BC101776|TATDN2|9797|TatD DNase domain containing 2##BC101770|TATDN2|9797|TatD DNase domain containing 2	1.793379	0.0	denovo_WM_7:47:0.441	denovo_WM_7:48:0.344	denovo_WM_7:62:0.401	denovo_WM_7:63:0.409
chr3	169763213	169763314	reg1011687.p2	4.584	+	TSC_hg19_v1_chr3_+_169755984 AK311293	-7311	+	TSC_hg19_v1_chr3_+_169755782 BC000181	-7473	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	-7509	+	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	136182	-	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	136265	-	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	176954	+	AK311293|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota	2.039088	0.012855	denovo_WM_7:-34:0.203
chr1	23866425	23866567	reg1008137.p1	4.583	+	L22846 NM_004091	-8785	-	BT019523 AB463593 BC053676 AK313939 TSC_hg19_v1_chr1_-_23857464	-9121	-	TSC_hg19_v1_chr1_-_23810732 NM_001143778 NM_017707	-55759	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	19488	-	NM_002167 X69111	19788	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	151784	+	L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##BT019523|E2F2|1870|E2F transcription factor 2##BC053676|E2F2|1870|E2F transcription factor 2##AK313939|E2F2|1870|E2F transcription factor 2##NM_001143778|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##NM_017707|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11	0.0	0.961443	CTCF.p2:-7:0.961
chr12	39300508	39300688	reg1004557.p1	4.583	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-1215	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-589973	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5125125	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	536401	-	AK314254 NM_005164	713244	-	BC038754 NM_001031748 BC048120 AK097445	719397	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	0.0	0.356725	CTCF.p2:-6:0.342
chr14	52933117	52933240	reg1010945.p2	4.583	+	TSC_hg19_v1_chr14_+_52781029 NM_000956 U19487 BC093927 BC093929 AY275471 X83868	-152043	+	BC040968 NM_000953 AB464671 EF577397	-198697	+	NM_007361 TSC_hg19_v1_chr14_-_52536023	-397193	-	TSC_hg19_v1_chr14_-_53019222 AK097748 BC137081 BC137082 BC144469 AB037765 BC152428 BC150205 BC142650 NM_001160047 NM_020784	85994	-	NM_001099652 AY255590 AK123953 AL834372	86757	+	CU679029 CU680454 GQ129372 GQ129373 TSC_hg19_v1_chr14_-_53162248 AK292839	229047	-	NM_000956|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##U19487|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##BC093927|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##BC093929|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##AY275471|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##X83868|PTGER2|5732|prostaglandin E receptor 2 (subtype EP2), 53kDa##BC040968|PTGDR|5729|prostaglandin D2 receptor (DP)##NM_000953|PTGDR|5729|prostaglandin D2 receptor (DP)##EF577397|PTGDR|5729|prostaglandin D2 receptor (DP)##NM_007361|NID2|22795|nidogen 2 (osteonidogen)##AK097748|TXNDC16|57544|thioredoxin domain containing 16##BC137081|TXNDC16|57544|thioredoxin domain containing 16##BC137082|TXNDC16|57544|thioredoxin domain containing 16##BC144469|TXNDC16|57544|thioredoxin domain containing 16##AB037765|TXNDC16|57544|thioredoxin domain containing 16##BC152428|TXNDC16|57544|thioredoxin domain containing 16##BC150205|TXNDC16|57544|thioredoxin domain containing 16##BC142650|TXNDC16|57544|thioredoxin domain containing 16##NM_001160047|TXNDC16|57544|thioredoxin domain containing 16##NM_020784|TXNDC16|57544|thioredoxin domain containing 16##NM_001099652|GPR137C|283554|G protein-coupled receptor 137C##AY255590|GPR137C|283554|G protein-coupled receptor 137C##AK123953|GPR137C|283554|G protein-coupled receptor 137C##AL834372|GPR137C|283554|G protein-coupled receptor 137C##GQ129372|ERO1L|30001|ERO1-like (S. cerevisiae)##GQ129373|ERO1L|30001|ERO1-like (S. cerevisiae)##AK292839|ERO1L|30001|ERO1-like (S. cerevisiae)	1.009455	0.140665	
chr20	32359835	32359962	reg1009912.p2	4.583	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-40102	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-51884	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-85701	-	TSC_hg19_v1_chr20_+_32399127 NM_176812	39188	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	39322	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	221581	+	BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.996715	0.0	
chr5	89146474	89146616	reg1012225.p2	4.583	+	AL833268 AL833274 NM_001131005 NM_001193347	-946651	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-961281	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-961425	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	558994	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	623637	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	624033	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.98252	0.0	denovo_WM_7:25:0.622	denovo_WM_7:26:0.241
chr7	45061399	45061539	reg1003410.p1	4.583	+	TSC_hg19_v1_chr7_+_45039808 AF370392 NM_001167934 NM_001167935 NM_031443 BC004903 BC008859 BC063663 BC016832 CU677733	-21615	+	TSC_hg19_v1_chr7_-_45026253 AK096179 BC092459	-35229	-	BC063854 TSC_hg19_v1_chr7_-_45018705 AK097912 NM_033054	-42772	-	NM_001029835 AK298671 AK303216 AK303534	5782	+	NM_001146334 TSC_hg19_v1_chr7_-_45128497	67030	-	BC017235 BC014918 AK022575 AK222943 TSC_hg19_v1_chr7_-_45151294	89814	-	AF370392|CCM2|83605|cerebral cavernous malformation 2##NM_001167934|CCM2|83605|cerebral cavernous malformation 2##NM_001167935|CCM2|83605|cerebral cavernous malformation 2##NM_031443|CCM2|83605|cerebral cavernous malformation 2##BC004903|CCM2|83605|cerebral cavernous malformation 2##BC008859|CCM2|83605|cerebral cavernous malformation 2##BC063663|CCM2|83605|cerebral cavernous malformation 2##BC016832|CCM2|83605|cerebral cavernous malformation 2##AK096179|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC092459|SNHG15|285958|small nucleolar RNA host gene 15 (non-protein coding)##BC063854|MYO1G|64005|myosin IG##AK097912|MYO1G|64005|myosin IG##NM_033054|MYO1G|64005|myosin IG##NM_001029835|CCM2|83605|cerebral cavernous malformation 2##AK298671|CCM2|83605|cerebral cavernous malformation 2##AK303534|CCM2|83605|cerebral cavernous malformation 2##NM_001146334|NACAD|23148|NAC alpha domain containing##BC017235|TBRG4|9238|transforming growth factor beta regulator 4##BC014918|TBRG4|9238|transforming growth factor beta regulator 4##AK022575|TBRG4|9238|transforming growth factor beta regulator 4##AK222943|TBRG4|9238|transforming growth factor beta regulator 4	0.0	0.0	
chr9	123654758	123654938	reg1004091.p1	4.583	+	BC108663 NM_001009936 NM_015651 TSC_hg19_v1_chr9_-_123639617	-15248	-	TSC_hg19_v1_chr9_-_123639471 AK122744 BC022374 AK303433	-15370	-	AK096706 TSC_hg19_v1_chr9_+_123605361 BX648532 BC028086 BC052374 BC040969	-49474	+	AK295959 NM_001190947	22001	-	AB590501 BT019408 CU692854 TSC_hg19_v1_chr9_-_123688443 U19261 BC024145	33555	-	AK090468 NM_005658	34324	-	BC108663|PHF19|26147|PHD finger protein 19##NM_001009936|PHF19|26147|PHD finger protein 19##NM_015651|PHF19|26147|PHD finger protein 19##AK122744|PHF19|26147|PHD finger protein 19##BC022374|PHF19|26147|PHD finger protein 19##AK303433|PHF19|26147|PHD finger protein 19##AK096706|LOC253039|253039|uncharacterized LOC253039##BX648532|LOC253039|253039|uncharacterized LOC253039##BC028086|LOC253039|253039|uncharacterized LOC253039##BC052374|LOC253039|253039|uncharacterized LOC253039##BC040969|LOC253039|253039|uncharacterized LOC253039##AK295959|TRAF1|7185|TNF receptor-associated factor 1##NM_001190947|TRAF1|7185|TNF receptor-associated factor 1##BT019408|TRAF1|7185|TNF receptor-associated factor 1##U19261|TRAF1|7185|TNF receptor-associated factor 1##BC024145|TRAF1|7185|TNF receptor-associated factor 1##AK090468|TRAF1|7185|TNF receptor-associated factor 1##NM_005658|TRAF1|7185|TNF receptor-associated factor 1	0.0	0.0	
chr4	151929046	151929216	reg1010296.p2	4.582	+	TSC_hg19_v1_chr4_-_151773972 BC172218	-155137	-	TSC_hg19_v1_chr4_-_151770612 AB208838	-158482	-	NM_006439	-426055	+	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	7287	-	AF216648 NM_006726	7517	-	TSC_hg19_v1_chr4_-_151936880 AK098039	7759	-	AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	0.409111	0.0	denovo_WM_7:103:0.311
chr6	21438844	21439024	reg1004885.p2	4.582	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-904211	+	CR749285 NM_001243076	-1034901	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-1036831	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	155438	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	227725	+	BC015850 NM_000948	858795	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.0	
chr9	94877814	94877946	reg1008230.p1	4.582	+	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	-216	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	-165491	-	TSC_hg19_v1_chr9_-_94711095 BC033697	-166752	-	TSC_hg19_v1_chr9_-_95055945 AB209234 D28473 AK293014	178058	-	U04953 TSC_hg19_v1_chr9_-_95055976 BX647236 AK308202 BX647430 NM_013417 BX537417 BX537429 BX538109 BX647071 BX648567	178095	-	TSC_hg19_v1_chr9_-_95055986 AK301272	178106	-	AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209234|IARS|3376|isoleucyl-tRNA synthetase##D28473|IARS|3376|isoleucyl-tRNA synthetase##AK293014|IARS|3376|isoleucyl-tRNA synthetase##U04953|IARS|3376|isoleucyl-tRNA synthetase##BX647236|IARS|3376|isoleucyl-tRNA synthetase##AK308202|IARS|3376|isoleucyl-tRNA synthetase##BX647430|IARS|3376|isoleucyl-tRNA synthetase##NM_013417|IARS|3376|isoleucyl-tRNA synthetase##BX537417|IARS|3376|isoleucyl-tRNA synthetase##BX537429|IARS|3376|isoleucyl-tRNA synthetase##BX538109|IARS|3376|isoleucyl-tRNA synthetase##BX647071|IARS|3376|isoleucyl-tRNA synthetase##BX648567|IARS|3376|isoleucyl-tRNA synthetase##AK301272|IARS|3376|isoleucyl-tRNA synthetase	0.995283	0.0	denovo_WM_7:90:0.673
chr3	171564522	171564630	reg1011079.p1	4.581	+	NM_001164436 AK026825	-3428	+	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	-36321	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-386505	-	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	192839	+	TSC_hg19_v1_chr3_+_171757437 AK127826	192858	+	TSC_hg19_v1_chr3_+_171757442 AY358367	192882	+	NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B	0.0	0.0	
chr3	190987399	190987579	reg1001148.p2	4.581	+	AY398681 AY573933 BC128106 BC128107 NM_198184	-57168	+	NM_001146686	-407025	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	-755612	+	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	59677	+	AK090630 AX746546 NM_198152	60835	-	AY858112 NM_001083308	191462	+	AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##NM_001146686|GMNC|647309|geminin coiled-coil domain containing##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2	0.0	0.0	
chr7	66505921	66506016	reg1010267.p1	4.581	+	TSC_hg19_v1_chr7_+_66461858 BC042156 NM_018264 AK001762 BC015591 BC051888	-44110	+	CU688080 TSC_hg19_v1_chr7_-_66460574 BC065700 AF151855 AK001779 AY169963 NM_016038 AK289609	-45468	-	TSC_hg19_v1_chr7_+_66386238 BC010519	-119697	+	TSC_hg19_v1_chr7_-_66767458 BC029419 D38438 D38500 BC029368 BC038841 BC056507	261460	-	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	261640	+	TSC_hg19_v1_chr7_+_66767642 AK307290	261680	+	BC042156|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##NM_018264|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##AK001762|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC015591|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC051888|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC065700|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AF151855|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK001779|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AY169963|SBDS|51119|Shwachman-Bodian-Diamond syndrome##NM_016038|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK289609|SBDS|51119|Shwachman-Bodian-Diamond syndrome##BC010519|C7orf42|55069|chromosome 7 open reading frame 42##BC029419|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38438|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38500|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC029368|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC038841|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##AK307290|STAG3L4|64940|stromal antigen 3-like 4	0.01514	0.896919	CTCF.p2:-30:0.897
chr9	128733807	128733902	reg1008703.p1	4.581	+	AK309713 NM_001134778	-223377	+	NM_006195 X59841 BC094883 TSC_hg19_v1_chr9_+_128509699 AK312717 AB464062 AF355141 AF355142 AK289376 AK297093	-224154	+	TSC_hg19_v1_chr9_-_128469506 AY524429 AY524430 AY524431 AY524432 NM_001006617 NM_001006618 NM_001006619 NM_001006620 NM_001006621 NM_024117	-264335	-	TSC_hg19_v1_chr9_+_129089122 NM_001011703 NM_033446 AK024432 BC028675 BC000122 CU688540	355313	+	NM_001174146 NM_001174147 NM_002316 AB587444 BC112120 BC113491 BC143801 AF057135 BC069601 CU686928 HQ258228 BC069588	642907	+	TSC_hg19_v1_chr9_+_129567318 NM_001135776 NM_014007 AF049907 AK026123 BC008828	833456	+	AK309713|PBX3|5090|pre-B-cell leukemia homeobox 3##NM_001134778|PBX3|5090|pre-B-cell leukemia homeobox 3##NM_006195|PBX3|5090|pre-B-cell leukemia homeobox 3##X59841|PBX3|5090|pre-B-cell leukemia homeobox 3##BC094883|PBX3|5090|pre-B-cell leukemia homeobox 3##AK312717|PBX3|5090|pre-B-cell leukemia homeobox 3##AF355141|PBX3|5090|pre-B-cell leukemia homeobox 3##AF355142|PBX3|5090|pre-B-cell leukemia homeobox 3##AK289376|PBX3|5090|pre-B-cell leukemia homeobox 3##AK297093|PBX3|5090|pre-B-cell leukemia homeobox 3##AY524429|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY524430|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY524431|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##AY524432|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_001006617|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_001006618|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_001006619|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_001006620|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_001006621|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_024117|MAPKAP1|79109|mitogen-activated protein kinase associated protein 1##NM_001011703|FAM125B|89853|family with sequence similarity 125, member B##NM_033446|FAM125B|89853|family with sequence similarity 125, member B##AK024432|FAM125B|89853|family with sequence similarity 125, member B##BC028675|FAM125B|89853|family with sequence similarity 125, member B##BC000122|FAM125B|89853|family with sequence similarity 125, member B##NM_001174146|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001174147|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_002316|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC112120|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC113491|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC143801|LMX1B|4010|LIM homeobox transcription factor 1, beta##AF057135|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069601|LMX1B|4010|LIM homeobox transcription factor 1, beta##HQ258228|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069588|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001135776|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_014007|ZBTB43|23099|zinc finger and BTB domain containing 43##AF049907|ZBTB43|23099|zinc finger and BTB domain containing 43##AK026123|ZBTB43|23099|zinc finger and BTB domain containing 43##BC008828|ZBTB43|23099|zinc finger and BTB domain containing 43	0.988928	0.0	denovo_WM_7:-21:0.972
chr1	245544224	245544329	reg1009916.p1	4.580	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-225968	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-410593	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-410646	+	AK024733 NM_022743	1036435	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	1126278	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	1126332	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.998394	0.60791	CTCF.p2:25:0.608
chr1	31482884	31483019	reg1012210.p2	4.580	+	AB385258 AF248634 NM_014654 TSC_hg19_v1_chr1_-_31381606	-101403	-	TSC_hg19_v1_chr1_-_31345363 AL049426	-137553	-	TSC_hg19_v1_chr1_-_31230697 NM_006762	-252261	-	TSC_hg19_v1_chr1_-_31538543 BC013398 D43951 AK291779 AK300457 AF315592 AK096476 AK222605	55566	-	TSC_hg19_v1_chr1_-_31538565 GQ334687 GQ334688 NM_001020658 NM_014676 AK294477	55641	-	BX647437 TSC_hg19_v1_chr1_-_31538801	55832	-	AF248634|SDC3|9672|syndecan 3##NM_014654|SDC3|9672|syndecan 3##AL049426|SDC3|9672|syndecan 3##NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##BC013398|PUM1|9698|pumilio homolog 1 (Drosophila)##D43951|PUM1|9698|pumilio homolog 1 (Drosophila)##AK291779|PUM1|9698|pumilio homolog 1 (Drosophila)##AK300457|PUM1|9698|pumilio homolog 1 (Drosophila)##AF315592|PUM1|9698|pumilio homolog 1 (Drosophila)##AK096476|PUM1|9698|pumilio homolog 1 (Drosophila)##AK222605|PUM1|9698|pumilio homolog 1 (Drosophila)##NM_001020658|PUM1|9698|pumilio homolog 1 (Drosophila)##NM_014676|PUM1|9698|pumilio homolog 1 (Drosophila)##AK294477|PUM1|9698|pumilio homolog 1 (Drosophila)##BX647437|PUM1|9698|pumilio homolog 1 (Drosophila)	0.997781	0.0	denovo_WM_7:20:0.998
chr2	111808779	111808864	reg1007104.p2	4.580	+	AK300513 NM_001142807 BC022268	-318642	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-372999	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-373178	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	69666	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	832805	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	832940	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.186654	0.0	
chr3	127456314	127456494	reg1013979.p1	4.580	+	TSC_hg19_v1_chr3_+_127391798 NM_032548 NM_172027 BC011858 AK098738 AK130594 AB053324 AB053325 AB053326 AK315148 AF297986 CU680084	-64587	+	TSC_hg19_v1_chr3_+_127348020 BC019330 AY359096 NM_015720 BC052585 AF219137	-108372	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	-139120	+	CR456835 TSC_hg19_v1_chr3_-_127541359 AK304844 BC000551 U67963 AK315529 BC006230 NM_007283	85026	-	TSC_hg19_v1_chr3_-_127542029 AK091314 AK310874 NM_001003794	85738	-	AK307108 BX537865 TSC_hg19_v1_chr3_+_127634319	177914	+	NM_032548|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##NM_172027|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC011858|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK098738|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK130594|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053324|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053325|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053326|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK315148|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AF297986|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC019330|PODXL2|50512|podocalyxin-like 2##AY359096|PODXL2|50512|podocalyxin-like 2##NM_015720|PODXL2|50512|podocalyxin-like 2##BC052585|PODXL2|50512|podocalyxin-like 2##AF219137|PODXL2|50512|podocalyxin-like 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2##CR456835|MGLL|11343|monoglyceride lipase##AK304844|MGLL|11343|monoglyceride lipase##BC000551|MGLL|11343|monoglyceride lipase##U67963|MGLL|11343|monoglyceride lipase##AK315529|MGLL|11343|monoglyceride lipase##BC006230|MGLL|11343|monoglyceride lipase##NM_007283|MGLL|11343|monoglyceride lipase##AK091314|MGLL|11343|monoglyceride lipase##AK310874|MGLL|11343|monoglyceride lipase##NM_001003794|MGLL|11343|monoglyceride lipase##AK307108|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12##BX537865|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	1.973968	0.0	denovo_WM_7:75:0.263	denovo_WM_7:76:0.683	denovo_WM_7:91:0.820
chr4	168009489	168009669	reg1011621.p1	4.580	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	-1215125	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	-1709422	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	-1760724	+	AK295407 NM_001204353 AK294637 AK295015 AK295281 AK091078 AK295414 AK313042 TSC_hg19_v1_chr4_-_168155646	146032	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	146125	-	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	146161	-	NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##AK295407|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204353|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294637|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295015|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295281|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK091078|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295414|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK313042|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.999559	0.0	
chr13	41307072	41307165	reg1006603.p2	4.579	+	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	-66406	-	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-1077257	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-1129756	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	38174	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	38214	-	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	56471	+	BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15	1.681879	0.0	denovo_WM_7:17:0.524	denovo_WM_7:32:0.626
chr16	30487017	30487122	reg1008301.p2	4.579	+	TSC_hg19_v1_chr16_+_30484116 AX794821 CU679099	-2936	+	BC008777 AX794824 TSC_hg19_v1_chr16_+_30484062 AK298674 AX794810 Y00796 AK303190	-2997	+	TSC_hg19_v1_chr16_+_30484003 NM_001114380 NM_002209 AX794822 AX794826 AK314246	-3069	+	AK027089 AK315449 TSC_hg19_v1_chr16_-_30537813 BC092403	50681	-	TSC_hg19_v1_chr16_-_30537922 BC013760 NM_024671	50822	-	TSC_hg19_v1_chr16_-_30538096 AK295274	51013	-	BC008777|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK298674|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##Y00796|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK303190|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_001114380|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##NM_002209|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK314246|ITGAL|3683|integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide)##AK027089|ZNF768|79724|zinc finger protein 768##AK315449|ZNF768|79724|zinc finger protein 768##BC092403|ZNF768|79724|zinc finger protein 768##BC013760|ZNF768|79724|zinc finger protein 768##NM_024671|ZNF768|79724|zinc finger protein 768##AK295274|ZNF768|79724|zinc finger protein 768	1.06629	0.0	
chr16	33294174	33294354	reg1008700.p2	4.579	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-32131	+	AL133588 NM_016212	-32750	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-88666	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	13361008	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	13361042	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	13428798	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	0.0	0.0	
chr1	78236416	78236596	reg1002586.p2	4.579	+	TSC_hg19_v1_chr1_-_78225538 BC016663 AK308402 AB029020 AF383172 AF383173 AK022864 NM_015017 NM_201624 NM_201626	-11054	-	TSC_hg19_v1_chr1_-_78149099 BC035079 BC035079	-87308	-	TSC_hg19_v1_chr1_-_78148354 BX641096 BX641096 AK310514 BX641001 BX641001 NM_015534	-88151	-	TSC_hg19_v1_chr1_+_78245342 BX537792 NM_198549 BC130387 BC144167 AK296411 AK092412 AX747532	8828	+	NM_001172309 NM_144573 AK298565 AK300728 AK307487 CR936630 BX648546 DQ464902 AF176780 AY211912 TSC_hg19_v1_chr1_+_78354351 BC055084	117806	+	DQ895919 EU176379 U05040 TSC_hg19_v1_chr1_-_78444757 BC010083 BC017247 AK300032 AK301581 AK303568	208220	-	BC016663|USP33|23032|ubiquitin specific peptidase 33##AK308402|USP33|23032|ubiquitin specific peptidase 33##AB029020|USP33|23032|ubiquitin specific peptidase 33##AF383172|USP33|23032|ubiquitin specific peptidase 33##AF383173|USP33|23032|ubiquitin specific peptidase 33##AK022864|USP33|23032|ubiquitin specific peptidase 33##NM_015017|USP33|23032|ubiquitin specific peptidase 33##NM_201624|USP33|23032|ubiquitin specific peptidase 33##NM_201626|USP33|23032|ubiquitin specific peptidase 33##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641096|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641096|ZZZ3|26009|zinc finger, ZZ-type containing 3##AK310514|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641001|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641001|ZZZ3|26009|zinc finger, ZZ-type containing 3##NM_015534|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX537792|FAM73A|374986|family with sequence similarity 73, member A##NM_198549|FAM73A|374986|family with sequence similarity 73, member A##BC130387|FAM73A|374986|family with sequence similarity 73, member A##BC144167|FAM73A|374986|family with sequence similarity 73, member A##AK296411|FAM73A|374986|family with sequence similarity 73, member A##AK092412|FAM73A|374986|family with sequence similarity 73, member A##NM_001172309|NEXN|91624|nexilin (F actin binding protein)##NM_144573|NEXN|91624|nexilin (F actin binding protein)##AK298565|NEXN|91624|nexilin (F actin binding protein)##AK300728|NEXN|91624|nexilin (F actin binding protein)##AK307487|NEXN|91624|nexilin (F actin binding protein)##CR936630|NEXN|91624|nexilin (F actin binding protein)##BX648546|NEXN|91624|nexilin (F actin binding protein)##DQ464902|NEXN|91624|nexilin (F actin binding protein)##AF176780|NEXN|91624|nexilin (F actin binding protein)##AY211912|NEXN|91624|nexilin (F actin binding protein)##BC055084|NEXN|91624|nexilin (F actin binding protein)##DQ895919|FUBP1|8880|far upstream element (FUSE) binding protein 1##EU176379|FUBP1|8880|far upstream element (FUSE) binding protein 1##U05040|FUBP1|8880|far upstream element (FUSE) binding protein 1##BC010083|FUBP1|8880|far upstream element (FUSE) binding protein 1##BC017247|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK300032|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK301581|FUBP1|8880|far upstream element (FUSE) binding protein 1##AK303568|FUBP1|8880|far upstream element (FUSE) binding protein 1	0.864529	0.0	denovo_WM_7:72:0.398	denovo_WM_7:75:0.203
chr8	52374675	52374827	reg1012236.p2	4.579	+	AJ003030 NM_018967	-1550155	+	NM_001007176 BC017981 AJ276240	-2389842	+	AB464227 CU677105 EU446862 TSC_hg19_v1_chr8_-_49833989 BC015895 BC014890 AK223368 AK312661 NM_003068	-2540841	-	EU170240 AY877349 NM_144651	347202	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	436851	-	TSC_hg19_v1_chr8_-_52811724 NM_052937	436976	-	AJ003030|SNTG1|54212|syntrophin, gamma 1##NM_018967|SNTG1|54212|syntrophin, gamma 1##NM_001007176|C8orf22|492307|chromosome 8 open reading frame 22##BC017981|C8orf22|492307|chromosome 8 open reading frame 22##AJ276240|C8orf22|492307|chromosome 8 open reading frame 22##EU446862|SNAI2|6591|snail homolog 2 (Drosophila)##BC015895|SNAI2|6591|snail homolog 2 (Drosophila)##BC014890|SNAI2|6591|snail homolog 2 (Drosophila)##AK223368|SNAI2|6591|snail homolog 2 (Drosophila)##AK312661|SNAI2|6591|snail homolog 2 (Drosophila)##NM_003068|SNAI2|6591|snail homolog 2 (Drosophila)##EU170240|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AY877349|PXDNL|137902|peroxidasin homolog (Drosophila)-like##NM_144651|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##NM_052937|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	0.0	0.0	
chr9	117259736	117259861	reg1010069.p2	4.579	+	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	-99047	-	AY703040 BC055285 NM_030767	-103114	-	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	-109508	-	AL110228 NM_001083885	5675	-	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	7932	-	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	90240	+	AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor##AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##AL110228|DFNB31|25861|deafness, autosomal recessive 31##NM_001083885|DFNB31|25861|deafness, autosomal recessive 31##BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1	2.850779	0.0	denovo_WM_7:7:0.954	denovo_WM_7:-8:0.404	denovo_WM_7:-11:0.273	denovo_WM_7:24:0.976
chr10	75928872	75929052	reg1013833.p2	4.578	+	TSC_hg19_v1_chr10_+_75910978 NM_001202450 NM_006721 AK301590 U90338 U33936	-17993	+	TSC_hg19_v1_chr10_-_75910561 AK315597 AK026983 AK299352 BC026232 NM_012095 NM_207012	-18274	-	TSC_hg19_v1_chr10_-_75910513 BC067127	-18450	-	TSC_hg19_v1_chr10_+_75936308 NM_001123 NM_001202449	7305	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	7520	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	7568	+	NM_001202450|ADK|132|adenosine kinase##NM_006721|ADK|132|adenosine kinase##AK301590|ADK|132|adenosine kinase##U90338|ADK|132|adenosine kinase##U33936|ADK|132|adenosine kinase##AK315597|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK026983|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##AK299352|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##BC026232|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_012095|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_207012|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##BC067127|AP3M1|26985|adaptor-related protein complex 3, mu 1 subunit##NM_001123|ADK|132|adenosine kinase##NM_001202449|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase	0.900698	0.0	denovo_WM_7:20:0.721
chr11	118663767	118663947	reg1011588.p2	4.578	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-1923	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-1978	-	TSC_hg19_v1_chr11_-_118661860 BC026228	-1998	-	AK291512 NM_001716 BC110352 X68149 AB464488	90703	+	NM_032966 X68829	100243	+	AB094091 NM_182557	117755	-	NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC026228|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like	0.99332	0.0	denovo_WM_7:88:0.838
chr12	57078161	57078285	reg1003867.p3	4.578	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-38397	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-38468	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-48097	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	3627	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	3717	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	3778	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	0.18505	0.0	
chr15	95129517	95129650	reg1015176.p1	4.578	+	NM_001159644 BC025708 BC111024 AK002037	-230274	+	NM_001159643 NM_018349 AY656717 BC131527	-288122	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-354725	+	TSC_hg19_v1_chr15_-_95870310 BC040875	740736	-	BC106083 NM_001145155 FM208183	1739578	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	1744394	+	NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.0	0.0	
chr17	74724431	74724505	reg1002194.p2	4.578	+	TSC_hg19_v1_chr17_+_74722935 NM_001080510 NM_001206983 NM_001206984 NM_001206985 NM_001206986 NM_001206987 BC033998 BC045819 BC106939	-1499	+	TSC_hg19_v1_chr17_-_74722857 EF527406 EF527407 NM_001081461 NM_015167	-1607	-	TSC_hg19_v1_chr17_-_74722680 BC047003 AK294816	-1754	-	TSC_hg19_v1_chr17_+_74732715 AF015190 NM_001242534 AF015186 AF015187	8313	+	AB385010 BT007250 CU688224 DQ891210 DQ894393 X62447 BC001303 BC000339 M90104 AK223252 BC066958 BC070086 AK092489 AK093626 AK097069 AK098209 AK123712 AK126432 AK297813 AX748231 TSC_hg19_v1_chr17_-_74733414	8861	-	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	8988	-	NM_001080510|METTL23|124512|methyltransferase like 23##NM_001206983|METTL23|124512|methyltransferase like 23##NM_001206984|METTL23|124512|methyltransferase like 23##NM_001206985|METTL23|124512|methyltransferase like 23##NM_001206986|METTL23|124512|methyltransferase like 23##NM_001206987|METTL23|124512|methyltransferase like 23##BC033998|METTL23|124512|methyltransferase like 23##BC045819|METTL23|124512|methyltransferase like 23##BC106939|METTL23|124512|methyltransferase like 23##EF527406|JMJD6|23210|jumonji domain containing 6##EF527407|JMJD6|23210|jumonji domain containing 6##NM_001081461|JMJD6|23210|jumonji domain containing 6##NM_015167|JMJD6|23210|jumonji domain containing 6##BC047003|JMJD6|23210|jumonji domain containing 6##AK294816|JMJD6|23210|jumonji domain containing 6##AF015190|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242534|MFSD11|79157|major facilitator superfamily domain containing 11##AF015186|MFSD11|79157|major facilitator superfamily domain containing 11##AF015187|MFSD11|79157|major facilitator superfamily domain containing 11##BT007250|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ891210|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ894393|SRSF2|6427|serine/arginine-rich splicing factor 2##X62447|SRSF2|6427|serine/arginine-rich splicing factor 2##BC001303|SRSF2|6427|serine/arginine-rich splicing factor 2##BC000339|SRSF2|6427|serine/arginine-rich splicing factor 2##M90104|SRSF2|6427|serine/arginine-rich splicing factor 2##AK223252|SRSF2|6427|serine/arginine-rich splicing factor 2##BC066958|SRSF2|6427|serine/arginine-rich splicing factor 2##BC070086|SRSF2|6427|serine/arginine-rich splicing factor 2##AK092489|SRSF2|6427|serine/arginine-rich splicing factor 2##AK093626|SRSF2|6427|serine/arginine-rich splicing factor 2##AK097069|SRSF2|6427|serine/arginine-rich splicing factor 2##AK098209|SRSF2|6427|serine/arginine-rich splicing factor 2##AK123712|SRSF2|6427|serine/arginine-rich splicing factor 2##AK126432|SRSF2|6427|serine/arginine-rich splicing factor 2##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2	0.99186	0.0	denovo_WM_7:34:0.331	denovo_WM_7:35:0.331	denovo_WM_7:36:0.331
chr2	202122805	202122985	reg1007518.p3	4.578	+	NM_001080125 AF422926 BC068050 AF422925 AF422929 X98172 AY429525	-98	+	NM_001080124 NM_001228 NM_033355 NM_033358 AF422927 AF422928 BC010390 AK310630 BC017031 U60520 X98176	-24670	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	-75035	+	NM_033356 X98173	2361	+	AK124115 BC031603 NM_001127391 NM_139163 AK292283	99198	-	TSC_hg19_v1_chr2_-_202316179 AK314384 AK054763	193252	-	NM_001080125|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422926|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC068050|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422929|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98172|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001080124|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_001228|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033355|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##NM_033358|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422927|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AF422928|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC010390|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310630|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##BC017031|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##U60520|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98176|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_033356|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##X98173|CASP8|841|caspase 8, apoptosis-related cysteine peptidase##AK124115|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##BC031603|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_001127391|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##NM_139163|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##AK292283|ALS2CR12|130540|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12##AK314384|TRAK2|66008|trafficking protein, kinesin binding 2##AK054763|TRAK2|66008|trafficking protein, kinesin binding 2	0.44724	0.0	denovo_WM_7:6:0.203
chr10	126124821	126124965	reg1010451.p1	4.577	+	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	-17375	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	-17420	-	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	-271740	-	NM_001146340 TSC_hg19_v1_chr10_-_126138606	13684	-	BC113629 BC113631 NM_001167880 NM_022126 TSC_hg19_v1_chr10_+_126150391 BC110344 BC073172 AK055532 BC007324 HQ258160	25528	+	D50930 TSC_hg19_v1_chr10_-_126432660	307751	-	CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase##BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_001146340|NKX1-2|390010|NK1 homeobox 2##BC113629|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC113631|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_001167880|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_022126|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC110344|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC073172|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##AK055532|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC007324|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##HQ258160|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##D50930|FAM53B|9679|family with sequence similarity 53, member B	0.988983	0.0	denovo_WM_7:31:0.756	denovo_WM_7:32:0.233
chr10	61641099	61641206	reg1012177.p2	4.577	+	AK126643 TSC_hg19_v1_chr10_-_61469461 NM_194298	-171428	-	AK299924 NM_001143773	-518492	-	CU687880 DQ894404 EU176262 AK294805 AK289796 TSC_hg19_v1_chr10_-_61122308 BC036453 AK316542 BC064431 NM_001001971 NM_001166698 NM_198215	-518867	-	AB590767 TSC_hg19_v1_chr10_-_61666205 S72869	25049	-	D90075 BC064391 TSC_hg19_v1_chr10_-_61666249 BC036757 BC022284 AK292593 NM_005436	25172	-	AK292927 AK092527 NM_001149	259564	-	AK126643|LOC100129721|100129721|uncharacterized LOC100129721##NM_194298|SLC16A9|220963|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)##AK299924|FAM13C|220965|family with sequence similarity 13, member C##NM_001143773|FAM13C|220965|family with sequence similarity 13, member C##DQ894404|FAM13C|220965|family with sequence similarity 13, member C##EU176262|FAM13C|220965|family with sequence similarity 13, member C##AK294805|FAM13C|220965|family with sequence similarity 13, member C##AK289796|FAM13C|220965|family with sequence similarity 13, member C##BC036453|FAM13C|220965|family with sequence similarity 13, member C##AK316542|FAM13C|220965|family with sequence similarity 13, member C##BC064431|FAM13C|220965|family with sequence similarity 13, member C##NM_001001971|FAM13C|220965|family with sequence similarity 13, member C##NM_001166698|FAM13C|220965|family with sequence similarity 13, member C##NM_198215|FAM13C|220965|family with sequence similarity 13, member C##S72869|CCDC6|8030|coiled-coil domain containing 6##BC064391|CCDC6|8030|coiled-coil domain containing 6##BC036757|CCDC6|8030|coiled-coil domain containing 6##BC022284|CCDC6|8030|coiled-coil domain containing 6##AK292593|CCDC6|8030|coiled-coil domain containing 6##NM_005436|CCDC6|8030|coiled-coil domain containing 6##AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	0.762919	0.0	denovo_WM_7:-22:0.752
chr11	107604490	107604587	reg1010496.p1	4.577	+	BC104185 BC113930 BC113987 BC104150 BC094685 AK312097 BC005261 U96094 NM_003063	-21779	-	TSC_hg19_v1_chr11_+_107462073 BC028725	-142462	+	TSC_hg19_v1_chr11_+_107461998 AK303689 AK054794	-142553	+	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	124967	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	125050	-	NM_017515	125375	-	BC104185|SLN|6588|sarcolipin##BC113930|SLN|6588|sarcolipin##BC113987|SLN|6588|sarcolipin##BC104150|SLN|6588|sarcolipin##BC094685|SLN|6588|sarcolipin##AK312097|SLN|6588|sarcolipin##BC005261|SLN|6588|sarcolipin##U96094|SLN|6588|sarcolipin##NM_003063|SLN|6588|sarcolipin##BC028725|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK303689|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK054794|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##NM_017515|SLC35F2|54733|solute carrier family 35, member F2	0.0	0.0	
chr1	15364755	15364875	reg1013075.p1	4.577	+	AY505122 NM_001017999	-92401	+	AY505121 NM_001018001	-108520	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	-114096	+	AK292184 NM_001136216 NM_001136217 TSC_hg19_v1_chr1_+_15479047	114216	+	AK129922 TSC_hg19_v1_chr1_+_15479310	114489	+	TSC_hg19_v1_chr1_+_15480249 AK001061 NM_001136218 NM_018022 BC000593 BC005177 AK098467	115433	+	AY505122|KAZN|23254|kazrin, periplakin interacting protein##NM_001017999|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AK292184|TMEM51|55092|transmembrane protein 51##NM_001136216|TMEM51|55092|transmembrane protein 51##NM_001136217|TMEM51|55092|transmembrane protein 51##AK129922|TMEM51|55092|transmembrane protein 51##AK001061|TMEM51|55092|transmembrane protein 51##NM_001136218|TMEM51|55092|transmembrane protein 51##NM_018022|TMEM51|55092|transmembrane protein 51##BC000593|TMEM51|55092|transmembrane protein 51##BC005177|TMEM51|55092|transmembrane protein 51##AK098467|TMEM51|55092|transmembrane protein 51	1.001781	0.125931	denovo_WM_7:-45:0.672
chr13	29370694	29370767	reg1011118.p1	4.577	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	-77675	-	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	-137436	+	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	-137522	+	BC150245 AB018317 NM_001033602 AB384524	228045	+	BC032481 NM_015233 AK293970 BC119654 BC119655 BC129985	632080	+	AK301633 TSC_hg19_v1_chr13_+_30070532	699777	+	BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3##AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##BC150245|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AB018317|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_001033602|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC032481|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_015233|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK293970|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119654|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119655|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC129985|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK301633|MTUS2|23281|microtubule associated tumor suppressor candidate 2	1.649975	0.0	denovo_WM_7:-74:0.294	denovo_WM_7:-75:0.206
chr16	70463445	70463619	reg1013440.p1	4.577	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-82704	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-130384	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-130456	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	9449	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	24967	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	39308	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	1.987155	0.0	
chr20	15298330	15298510	reg1006286.p1	4.577	+	BC018687 NM_001033087	-120917	+	AB040902 AF169677 TSC_hg19_v1_chr20_-_14318278 BC020870 AK027297 AK074883 NM_013281 NM_198391	-980164	-	TSC_hg19_v1_chr20_+_13976263 BC101216 BC101217 BC101218 BC101219 BC126936 BC128036 EF159161	-1322084	+	TSC_hg19_v1_chr20_-_16553995 AB385485 CU690726 AK307399 AB046810 BC150261 BX647572 AK095322 AY166853 BC050577 NM_001199865 NM_001199866 NM_024704	1255593	-	NM_003092 NM_198220 TSC_hg19_v1_chr20_+_16710679 BC018022 BC036737 AK313004 BC022311 BC008311 M15841	1412243	+	BC101688 BC101690 AF233261 NM_020157 AY359082 AF243505 AJ242552	1430601	+	BC018687|MACROD2|140733|MACRO domain containing 2##NM_001033087|MACROD2|140733|MACRO domain containing 2##AB040902|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AF169677|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC020870|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK027297|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK074883|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_013281|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_198391|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC101216|MACROD2|140733|MACRO domain containing 2##BC101217|MACROD2|140733|MACRO domain containing 2##BC101218|MACROD2|140733|MACRO domain containing 2##BC101219|MACROD2|140733|MACRO domain containing 2##BC126936|MACROD2|140733|MACRO domain containing 2##BC128036|MACROD2|140733|MACRO domain containing 2##EF159161|MACROD2|140733|MACRO domain containing 2##AK307399|KIF16B|55614|kinesin family member 16B##AB046810|KIF16B|55614|kinesin family member 16B##BC150261|KIF16B|55614|kinesin family member 16B##BX647572|KIF16B|55614|kinesin family member 16B##AK095322|KIF16B|55614|kinesin family member 16B##AY166853|KIF16B|55614|kinesin family member 16B##BC050577|KIF16B|55614|kinesin family member 16B##NM_001199865|KIF16B|55614|kinesin family member 16B##NM_001199866|KIF16B|55614|kinesin family member 16B##NM_024704|KIF16B|55614|kinesin family member 16B##NM_003092|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##NM_198220|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC018022|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC036737|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##AK313004|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC022311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC008311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##M15841|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC101688|OTOR|56914|otoraplin##BC101690|OTOR|56914|otoraplin##AF233261|OTOR|56914|otoraplin##NM_020157|OTOR|56914|otoraplin##AY359082|OTOR|56914|otoraplin##AF243505|OTOR|56914|otoraplin##AJ242552|OTOR|56914|otoraplin	0.01486	0.0	
chr7	1667282	1667370	reg1009965.p1	4.577	+	TSC_hg19_v1_chr7_+_1609777 BX538028 BC036405 BC047649	-57505	+	AB067495 TSC_hg19_v1_chr7_+_1609735	-57593	+	TSC_hg19_v1_chr7_+_1609724 AK054665	-57613	+	NM_001128636	81471	+	TSC_hg19_v1_chr7_-_1980177 BC018870	312837	-	AK310481 TSC_hg19_v1_chr7_-_2272542	605209	-	BX538028|KIAA1908|114796|uncharacterized LOC114796##BC036405|KIAA1908|114796|uncharacterized LOC114796##BC047649|KIAA1908|114796|uncharacterized LOC114796##AB067495|KIAA1908|114796|uncharacterized LOC114796##AK054665|KIAA1908|114796|uncharacterized LOC114796##NM_001128636|ELFN1|392617|extracellular leucine-rich repeat and fibronectin type III domain containing 1##BC018870|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310481|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)	0.994199	0.0	denovo_WM_7:76:0.233	denovo_WM_7:82:0.547
chrX	17101107	17101219	reg1011027.p2	4.577	+	TSC_hg19_v1_chrX_+_16964847 AF010233 NM_001080975 NM_004726 AF511533 AF512951	-136231	+	TSC_hg19_v1_chrX_-_16888462 NM_002893	-212666	-	TSC_hg19_v1_chrX_-_16888456 X72841	-212712	-	TSC_hg19_v1_chrX_+_17393357 AK302437	292191	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	292379	+	TSC_hg19_v1_chrX_+_17393806 BC136415 BC171763	292648	+	AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2##AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2##AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_002893|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7##AK302437|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC136415|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##BC171763|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)	0.999607	0.190834	
chr13	111260137	111260284	reg1009292.p1	4.576	+	AJ272065 CU693106 DQ892145 DQ895340 TSC_hg19_v1_chr13_-_111214042 AK000436 AK000446 NM_017817 BC026025	-46238	-	X05610 TSC_hg19_v1_chr13_+_111154089	-106159	+	TSC_hg19_v1_chr13_+_111138079 M24766	-122122	+	TSC_hg19_v1_chr13_+_111267870 NM_001242882 NM_001242883	7620	+	TSC_hg19_v1_chr13_+_111267898 AK093771 AK298917 AX748297 AK302117 AK057767 AK296758 NM_001242881 NM_018210 AK296227 AK024260 BC041028 AK001631 AK225129	7832	+	TSC_hg19_v1_chr13_-_111268694 AK095260	8488	-	AJ272065|RAB20|55647|RAB20, member RAS oncogene family##DQ892145|RAB20|55647|RAB20, member RAS oncogene family##DQ895340|RAB20|55647|RAB20, member RAS oncogene family##AK000436|RAB20|55647|RAB20, member RAS oncogene family##AK000446|RAB20|55647|RAB20, member RAS oncogene family##NM_017817|RAB20|55647|RAB20, member RAS oncogene family##BC026025|RAB20|55647|RAB20, member RAS oncogene family##X05610|COL4A2|1284|collagen, type IV, alpha 2##M24766|COL4A2|1284|collagen, type IV, alpha 2##NM_001242882|CARKD|55739|carbohydrate kinase domain containing##NM_001242883|CARKD|55739|carbohydrate kinase domain containing##AK093771|CARKD|55739|carbohydrate kinase domain containing##AK298917|CARKD|55739|carbohydrate kinase domain containing##AK302117|CARKD|55739|carbohydrate kinase domain containing##AK057767|CARKD|55739|carbohydrate kinase domain containing##AK296758|CARKD|55739|carbohydrate kinase domain containing##NM_001242881|CARKD|55739|carbohydrate kinase domain containing##NM_018210|CARKD|55739|carbohydrate kinase domain containing##AK296227|CARKD|55739|carbohydrate kinase domain containing##AK024260|CARKD|55739|carbohydrate kinase domain containing##BC041028|CARKD|55739|carbohydrate kinase domain containing##AK001631|CARKD|55739|carbohydrate kinase domain containing##AK225129|CARKD|55739|carbohydrate kinase domain containing	0.0	0.0	
chr6	125476044	125476164	reg1012228.p1	4.576	+	AK124817 NM_001003395	-728	+	TSC_hg19_v1_chr6_+_125474909 NM_001003396 NM_001003397 NM_003287 AK291866 U44427 BC002375 AK291872 AF208012 AK291887	-1165	+	AK093417 AX748113 BC026087 NM_152553	-171593	+	TSC_hg19_v1_chr6_-_125623123 AF529363 BC066332 BC061520 BC003357 AF151888	147001	-	TSC_hg19_v1_chr6_-_125623231 BC001671 NM_016063	147143	-	TSC_hg19_v1_chr6_+_126070724 NM_012259	594623	+	AK124817|TPD52L1|7164|tumor protein D52-like 1##NM_001003395|TPD52L1|7164|tumor protein D52-like 1##NM_001003396|TPD52L1|7164|tumor protein D52-like 1##NM_001003397|TPD52L1|7164|tumor protein D52-like 1##NM_003287|TPD52L1|7164|tumor protein D52-like 1##AK291866|TPD52L1|7164|tumor protein D52-like 1##U44427|TPD52L1|7164|tumor protein D52-like 1##BC002375|TPD52L1|7164|tumor protein D52-like 1##AK291872|TPD52L1|7164|tumor protein D52-like 1##AF208012|TPD52L1|7164|tumor protein D52-like 1##AK291887|TPD52L1|7164|tumor protein D52-like 1##AK093417|RNF217|154214|ring finger protein 217##BC026087|RNF217|154214|ring finger protein 217##NM_152553|RNF217|154214|ring finger protein 217##AF529363|HDDC2|51020|HD domain containing 2##BC066332|HDDC2|51020|HD domain containing 2##BC061520|HDDC2|51020|HD domain containing 2##BC003357|HDDC2|51020|HD domain containing 2##AF151888|HDDC2|51020|HD domain containing 2##BC001671|HDDC2|51020|HD domain containing 2##NM_016063|HDDC2|51020|HD domain containing 2##NM_012259|HEY2|23493|hairy/enhancer-of-split related with YRPW motif 2	0.988185	0.03071	denovo_WM_7:-15:0.327	denovo_WM_7:-17:0.561
chr6	43545296	43545476	reg1009963.p2	4.576	+	AK316151 TSC_hg19_v1_chr6_+_43543921 AB024313 AF158185 BC015742	-1409	+	NM_006502 AK023893 AK307660 AK294430 TSC_hg19_v1_chr6_+_43543902	-1491	+	TSC_hg19_v1_chr6_-_43543767 AK056619 AK291452 BC062635 NM_020750	-1597	-	AK000430 TSC_hg19_v1_chr6_-_43595067	49671	-	TSC_hg19_v1_chr6_-_43595101 AK290267	49719	-	AL834331 AF168990 CU687988 TSC_hg19_v1_chr6_-_43596918	51455	-	AK316151|POLH|5429|polymerase (DNA directed), eta##AB024313|POLH|5429|polymerase (DNA directed), eta##AF158185|POLH|5429|polymerase (DNA directed), eta##BC015742|POLH|5429|polymerase (DNA directed), eta##NM_006502|POLH|5429|polymerase (DNA directed), eta##AK023893|POLH|5429|polymerase (DNA directed), eta##AK307660|POLH|5429|polymerase (DNA directed), eta##AK294430|POLH|5429|polymerase (DNA directed), eta##AK056619|XPO5|57510|exportin 5##AK291452|XPO5|57510|exportin 5##BC062635|XPO5|57510|exportin 5##NM_020750|XPO5|57510|exportin 5##AK000430|GTPBP2|54676|GTP binding protein 2##AK290267|GTPBP2|54676|GTP binding protein 2##AL834331|GTPBP2|54676|GTP binding protein 2##AF168990|GTPBP2|54676|GTP binding protein 2	0.0	0.0	
chr7	852637	852814	reg1005081.p1	4.576	+	BC026734 NM_001164758 NM_001164759	-85426	-	TSC_hg19_v1_chr7_-_766907 NM_001164760	-85799	-	TSC_hg19_v1_chr7_+_766769 AK056233	-85934	+	BC013613 NM_001171946	2468	+	NM_001171944 NM_001171945 NM_025154 TSC_hg19_v1_chr7_+_856279 AK022816 AK302896 AK309120 AK022469 BX538211 BC151827 AB018353 BC152418	3557	+	BC142707 NM_001130965 AB463335 CU680640	19423	+	BC026734|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##NM_001164758|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##NM_001164759|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##NM_001164760|PRKAR1B|5575|protein kinase, cAMP-dependent, regulatory, type I, beta##AK056233|HEATR2|54919|HEAT repeat containing 2##BC013613|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171946|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171944|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001171945|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_025154|SUN1|23353|Sad1 and UNC84 domain containing 1##AK022816|SUN1|23353|Sad1 and UNC84 domain containing 1##AK302896|SUN1|23353|Sad1 and UNC84 domain containing 1##AK309120|SUN1|23353|Sad1 and UNC84 domain containing 1##AK022469|SUN1|23353|Sad1 and UNC84 domain containing 1##BX538211|SUN1|23353|Sad1 and UNC84 domain containing 1##BC151827|SUN1|23353|Sad1 and UNC84 domain containing 1##AB018353|SUN1|23353|Sad1 and UNC84 domain containing 1##BC152418|SUN1|23353|Sad1 and UNC84 domain containing 1##BC142707|SUN1|23353|Sad1 and UNC84 domain containing 1##NM_001130965|SUN1|23353|Sad1 and UNC84 domain containing 1	0.0	0.0	
chr1	169084490	169084615	reg1012547.p1	4.575	+	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	-8583	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	-386123	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	-538760	+	TSC_hg19_v1_chr1_-_169337033 AB209049 BC006983 AK290701 AF153191 AK094513 AK301917 NM_013330 NM_197972	252540	-	NM_003666 AF288161 U79751 AK223533	252671	+	TSC_hg19_v1_chr1_+_169337450 AK307151 AK291725 BC020716	252897	+	AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##AB209049|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##BC006983|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK290701|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AF153191|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK094513|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK301917|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_013330|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_197972|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_003666|BLZF1|8548|basic leucine zipper nuclear factor 1##AF288161|BLZF1|8548|basic leucine zipper nuclear factor 1##U79751|BLZF1|8548|basic leucine zipper nuclear factor 1##AK223533|BLZF1|8548|basic leucine zipper nuclear factor 1##AK307151|BLZF1|8548|basic leucine zipper nuclear factor 1##AK291725|BLZF1|8548|basic leucine zipper nuclear factor 1##BC020716|BLZF1|8548|basic leucine zipper nuclear factor 1	1.974699	0.0	denovo_WM_7:28:0.962	denovo_WM_7:43:0.704	denovo_WM_7:44:0.279
chr12	3409183	3409363	reg1009715.p1	4.575	+	NM_001168320 NM_006675 TSC_hg19_v1_chr12_+_3186544 AK223179 AK027366 AF089749 BC071881	-222711	+	TSC_hg19_v1_chr12_+_3069109 BX640921	-340212	+	TSC_hg19_v1_chr12_+_3068645 NM_003213 NM_201441 AY101179 BC015497 AK222947 U63824 NM_201443	-340679	+	AB209027 NM_019854 TSC_hg19_v1_chr12_+_3600458	191168	+	AK125333 TSC_hg19_v1_chr12_-_3601984	192712	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	452995	-	NM_001168320|TSPAN9|10867|tetraspanin 9##NM_006675|TSPAN9|10867|tetraspanin 9##AK223179|TSPAN9|10867|tetraspanin 9##AK027366|TSPAN9|10867|tetraspanin 9##AF089749|TSPAN9|10867|tetraspanin 9##BC071881|TSPAN9|10867|tetraspanin 9##BX640921|TEAD4|7004|TEA domain family member 4##NM_003213|TEAD4|7004|TEA domain family member 4##NM_201441|TEAD4|7004|TEA domain family member 4##AY101179|TEAD4|7004|TEA domain family member 4##BC015497|TEAD4|7004|TEA domain family member 4##AK222947|TEAD4|7004|TEA domain family member 4##U63824|TEAD4|7004|TEA domain family member 4##NM_201443|TEAD4|7004|TEA domain family member 4##AB209027|PRMT8|56341|protein arginine methyltransferase 8##NM_019854|PRMT8|56341|protein arginine methyltransferase 8##AK125333|LOC100129223|100129223|uncharacterized LOC100129223##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B	0.0	0.900677	CTCF.p2:-38:0.885
chr14	76426143	76426276	reg1013299.p2	4.575	+	TSC_hg19_v1_chr14_+_76127671 BC136472 BC136473	-298546	+	TSC_hg19_v1_chr14_+_76127610 AK309748 AY237126 BC002766	-298592	+	NM_015072 TSC_hg19_v1_chr14_+_76127588 BC110652	-298640	+	BT007287 AB590825 TSC_hg19_v1_chr14_-_76447259	21038	-	TSC_hg19_v1_chr14_-_76447323 BC018503 EF560714	21121	-	AK313564 TSC_hg19_v1_chr14_-_76447479 X14149 J03241	21262	-	BC136472|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##BC136473|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##AK309748|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##AY237126|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##NM_015072|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##BC110652|TTLL5|23093|tubulin tyrosine ligase-like family, member 5##BT007287|TGFB3|7043|transforming growth factor, beta 3##BC018503|TGFB3|7043|transforming growth factor, beta 3##EF560714|TGFB3|7043|transforming growth factor, beta 3##AK313564|TGFB3|7043|transforming growth factor, beta 3##X14149|TGFB3|7043|transforming growth factor, beta 3##J03241|TGFB3|7043|transforming growth factor, beta 3	2.975253	0.0	denovo_WM_7:72:0.977	denovo_WM_7:-83:0.556	denovo_WM_7:87:0.977
chr3	10223359	10223486	reg1010141.p1	4.575	+	NM_001570 BC125184 AK299033 AK312841 TSC_hg19_v1_chr3_+_10206602 AF026273 AB587544 AJ496794	-16822	+	TSC_hg19_v1_chr3_+_10183517 AB528056	-39884	+	AK304002 TSC_hg19_v1_chr3_+_10183487	-39924	+	TSC_hg19_v1_chr3_+_10290182 NM_014760	66753	+	TSC_hg19_v1_chr3_+_10290210 D86972	66840	+	TSC_hg19_v1_chr3_+_10290370 AK289794 BC090935 BC101776 BC101770	67100	+	NM_001570|IRAK2|3656|interleukin-1 receptor-associated kinase 2##BC125184|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK299033|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK312841|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AF026273|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AJ496794|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK304002|VHL|7428|von Hippel-Lindau tumor suppressor##NM_014760|TATDN2|9797|TatD DNase domain containing 2##D86972|TATDN2|9797|TatD DNase domain containing 2##AK289794|TATDN2|9797|TatD DNase domain containing 2##BC090935|TATDN2|9797|TatD DNase domain containing 2##BC101776|TATDN2|9797|TatD DNase domain containing 2##BC101770|TATDN2|9797|TatD DNase domain containing 2	0.0	0.0	
chr5	12096180	12096312	reg1009481.p1	4.575	+	TSC_hg19_v1_chr5_-_11904184 AK296232	-192062	-	U96136 EU328348 TSC_hg19_v1_chr5_-_11904098 AB013805 NM_001332	-192210	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	-1334847	-	AX800026 AY045575 NM_001369	1848342	-	AY050643 TSC_hg19_v1_chr5_-_14011873	1915624	-	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	2047426	+	AK296232|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##U96136|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##EU328348|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AB013805|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_001332|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_004394|DAP|1611|death-associated protein##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)	0.92398	0.0	denovo_WM_7:28:0.621	denovo_WM_7:29:0.303
chrX	122203022	122203147	reg1010831.p1	4.575	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-2021644	+	BC029540 NM_001080141 NM_001080146	-2083447	-	BC029540 NM_001080137 NM_001080138 NM_001080139 NM_001080141 NM_001080142 NM_001080143 NM_001080144 NM_001080145 NM_001080146 NM_001242922 NM_173571	-2088307	-	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	115156	+	TSC_hg19_v1_chrX_-_122866885 AK001758	663799	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	663813	-	BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080137|CT47A10|728036|cancer/testis antigen family 47, member A10##NM_001080138|CT47A9|728042|cancer/testis antigen family 47, member A9##NM_001080139|CT47A8|728049|cancer/testis antigen family 47, member A8##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080142|CT47A5|728072|cancer/testis antigen family 47, member A5##NM_001080143|CT47A4|728075|cancer/testis antigen family 47, member A4##NM_001080144|CT47A3|728082|cancer/testis antigen family 47, member A3##NM_001080145|CT47A2|728090|cancer/testis antigen family 47, member A2##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##NM_001242922|CT47A12|100507170|cancer/testis antigen family 47, member A12##NM_173571|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2	0.207147	0.0	
chr12	113764481	113764589	reg1014475.p1	4.574	+	TSC_hg19_v1_chr12_+_113659290 BC142664 AK057414 BC150203	-105232	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	-105255	+	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	-105292	+	BC098174 BC098360 TSC_hg19_v1_chr12_-_113772887	8326	-	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	8390	-	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	31836	+	BC142664|TPCN1|53373|two pore segment channel 1##AK057414|TPCN1|53373|two pore segment channel 1##BC150203|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##BC098360|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2	0.987748	0.0	denovo_WM_7:-40:0.965
chr7	6388674	6388806	reg1011090.p1	4.574	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-230	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-76509	-	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-244142	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	25487	+	TSC_hg19_v1_chr7_-_6474593 AK298910	85850	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	98799	-	AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta	0.0	0.967749	CTCF.p2:9:0.968
chr1	1677818	1677998	reg1001155.p2	4.573	+	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	-447	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	-22132	-	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-53691	-	AK296722 NM_001198995	12172	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	31978	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	32361	-	AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase	0.0	0.0	
chr12	52463320	52463500	reg1003718.p2	4.573	+	NM_002135 NM_173157 TSC_hg19_v1_chr12_+_52445225 AK075491 AK075054 AK314437 BC016147 L13740 D49728	-18194	+	AK297526 NM_001202233	-46795	+	TSC_hg19_v1_chr12_+_52400728 BC053666 NM_181711	-62669	+	TSC_hg19_v1_chr12_+_52463754 NM_001098673 NM_021934 AK021835	344	+	TSC_hg19_v1_chr12_+_52463790 BC064533 BC005151 AF218031 BC009937	388	+	CU688016 AJ717743 BC033114 BC065180 NM_001081492 NM_182507 TSC_hg19_v1_chr12_-_52585799	122334	-	NM_002135|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_173157|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075491|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075054|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK314437|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC016147|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##L13740|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##D49728|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK297526|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_001202233|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC053666|GRASP|160622|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein##NM_181711|GRASP|160622|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein##NM_001098673|C12orf44|60673|chromosome 12 open reading frame 44##NM_021934|C12orf44|60673|chromosome 12 open reading frame 44##AK021835|C12orf44|60673|chromosome 12 open reading frame 44##BC005151|C12orf44|60673|chromosome 12 open reading frame 44##AF218031|C12orf44|60673|chromosome 12 open reading frame 44##BC009937|C12orf44|60673|chromosome 12 open reading frame 44##AJ717743|KRT80|144501|keratin 80##BC033114|KRT80|144501|keratin 80##BC065180|KRT80|144501|keratin 80##NM_001081492|KRT80|144501|keratin 80##NM_182507|KRT80|144501|keratin 80	0.0	0.0	
chr15	43210528	43210653	reg1007869.p2	4.573	+	TSC_hg19_v1_chr15_-_43029327 AF525398 NM_138477	-181223	-	TSC_hg19_v1_chr15_-_43029313 BC052568 BC066640	-181370	-	TSC_hg19_v1_chr15_+_42867803 CR627426 NM_020759	-342783	+	AF525400 TSC_hg19_v1_chr15_-_43212975 AK131372 BC041876 NM_173500 BC071556	2392	-	AF525401 AY061886 AK292516 TSC_hg19_v1_chr15_-_43398234 AK056441 NM_174916 BC113505 BC113507 AK302489	187649	-	TSC_hg19_v1_chr15_-_43408716 D28374	198119	-	AF525398|CDAN1|146059|congenital dyserythropoietic anemia, type I##NM_138477|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC052568|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC066640|CDAN1|146059|congenital dyserythropoietic anemia, type I##NM_020759|STARD9|57519|StAR-related lipid transfer (START) domain containing 9##AF525400|TTBK2|146057|tau tubulin kinase 2##AK131372|TTBK2|146057|tau tubulin kinase 2##BC041876|TTBK2|146057|tau tubulin kinase 2##NM_173500|TTBK2|146057|tau tubulin kinase 2##BC071556|TTBK2|146057|tau tubulin kinase 2##AF525401|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AY061886|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK292516|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK056441|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##NM_174916|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113505|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##BC113507|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##AK302489|UBR1|197131|ubiquitin protein ligase E3 component n-recognin 1##D28374|RPS3A|6189|ribosomal protein S3A	0.076982	0.0	
chr16	17570731	17570869	reg1012376.p1	4.573	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-5995	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-1244270	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-1244312	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1002591	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1227296	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	1230855	-	AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a	0.0	0.143111	
chr16	88727594	88727774	reg1001269.p2	4.573	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	-10235	-	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	-22681	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-90815	+	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	1833	-	TSC_hg19_v1_chr16_+_88729753 BX640980	2067	+	TSC_hg19_v1_chr16_+_88729781 BC015583 BC050404	2111	+	AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##BX640980|MGC23284|197187|uncharacterized LOC197187##BC015583|MGC23284|197187|uncharacterized LOC197187##BC050404|MGC23284|197187|uncharacterized LOC197187	0.0	0.0	
chr2	69720258	69720431	reg1011832.p1	4.573	+	BC113692 BC113694 AY335194 NM_001002755 NM_001002756 NM_001002757 NM_015700 TSC_hg19_v1_chr2_-_69664788	-55585	-	TSC_hg19_v1_chr2_-_69664606 AY286306 AY286307 BX538347	-55730	-	AJ132584 AF132967 AB528729 HQ258750 TSC_hg19_v1_chr2_-_69664568 AK300700 AK308567	-55771	-	TSC_hg19_v1_chr2_-_69870783 AK310951 AK056043	150424	-	TSC_hg19_v1_chr2_-_69870872 AB028971	150513	-	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	150748	-	BC113692|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BC113694|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY335194|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002755|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002756|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002757|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_015700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286306|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286307|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BX538347|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AJ132584|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AF132967|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##HQ258750|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK300700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK308567|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK310951|AAK1|22848|AP2 associated kinase 1##AK056043|AAK1|22848|AP2 associated kinase 1##AB028971|AAK1|22848|AP2 associated kinase 1##NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1	0.998156	0.0	
chr2	9319357	9319537	reg1013061.p2	4.573	+	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	-175626	-	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	-341728	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	-497244	+	TSC_hg19_v1_chr2_+_9346906 AB007860 NM_001135191 NM_003887	27445	+	TSC_hg19_v1_chr2_+_9346940 BC063308	27512	+	TSC_hg19_v1_chr2_-_9563308 AK093179	243895	-	AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AB007860|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##NM_001135191|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##NM_003887|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##BC063308|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##AK093179|ITGB1BP1|9270|integrin beta 1 binding protein 1	0.0	0.0	
chr9	80592295	80592421	reg1011451.p1	4.573	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-329127	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-624010	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-799850	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	53826	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	258672	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	319700	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.805669	0.015666	denovo_WM_7:19:0.777
chrX	9926307	9926423	reg1010093.p1	4.573	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-171822	+	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	-171885	+	Z48804 BC015657 BC068977 NM_000273	-192405	-	NM_001195081	9032	+	BC098455 NM_015691	57428	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	198689	+	BC140866|SHROOM2|357|shroom family member 2##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4	1.640299	0.0	denovo_WM_7:-13:0.513	denovo_WM_7:16:0.298	denovo_WM_7:17:0.298	denovo_WM_7:18:0.298
chr1	51908507	51908616	reg1010997.p2	4.572	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-20795	-	AF007170 NM_001144832	-97823	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-112329	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	76362	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	76463	-	NM_024586 NM_148906 NM_148908 NM_148909	173984	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.0	0.0	
chr17	29266433	29266523	reg1009031.p2	4.572	+	AK074196 AJ238994 AJ242782 NM_018404 TSC_hg19_v1_chr17_+_29248960 AK074204 AK222526 AJ272195 BC033758 DQ288859	-17646	+	CU692922 TSC_hg19_v1_chr17_-_29233257 AJ314645 AK026382 AK225474 BC024328 AK298495 NM_024683	-33227	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	-107493	+	NM_001184992 NM_032322 NM_197939 TSC_hg19_v1_chr17_+_29298040 BC126420 BC126422 BC144143 AJ496729 BC005084	31520	+	TSC_hg19_v1_chr17_+_29298062 AK226030 BC082262 AK312979 AK122646 AK122709 AB470605 AY598332	31662	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	155466	+	AK074196|ADAP2|55803|ArfGAP with dual PH domains 2##AJ238994|ADAP2|55803|ArfGAP with dual PH domains 2##AJ242782|ADAP2|55803|ArfGAP with dual PH domains 2##NM_018404|ADAP2|55803|ArfGAP with dual PH domains 2##AK074204|ADAP2|55803|ArfGAP with dual PH domains 2##AK222526|ADAP2|55803|ArfGAP with dual PH domains 2##AJ272195|ADAP2|55803|ArfGAP with dual PH domains 2##BC033758|ADAP2|55803|ArfGAP with dual PH domains 2##DQ288859|ADAP2|55803|ArfGAP with dual PH domains 2##AJ314645|C17orf42|79736|chromosome 17 open reading frame 42##AK026382|C17orf42|79736|chromosome 17 open reading frame 42##AK225474|C17orf42|79736|chromosome 17 open reading frame 42##BC024328|C17orf42|79736|chromosome 17 open reading frame 42##AK298495|C17orf42|79736|chromosome 17 open reading frame 42##NM_024683|C17orf42|79736|chromosome 17 open reading frame 42##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5##NM_001184992|RNF135|84282|ring finger protein 135##NM_032322|RNF135|84282|ring finger protein 135##NM_197939|RNF135|84282|ring finger protein 135##BC126420|RNF135|84282|ring finger protein 135##BC126422|RNF135|84282|ring finger protein 135##BC144143|RNF135|84282|ring finger protein 135##AJ496729|RNF135|84282|ring finger protein 135##BC005084|RNF135|84282|ring finger protein 135##AK226030|RNF135|84282|ring finger protein 135##BC082262|RNF135|84282|ring finger protein 135##AK312979|RNF135|84282|ring finger protein 135##AK122646|RNF135|84282|ring finger protein 135##AK122709|RNF135|84282|ring finger protein 135##AB470605|RNF135|84282|ring finger protein 135##AY598332|RNF135|84282|ring finger protein 135##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1	0.998424	0.0	denovo_WM_7:-17:0.442	denovo_WM_7:-18:0.442
chr18	77983928	77984031	reg1013947.p2	4.572	+	TSC_hg19_v1_chr18_+_77905812 AK056304	-78112	+	AK292566 TSC_hg19_v1_chr18_+_77867161 AB020670	-116811	+	BC071589 NM_014913	-117065	+	AB044556 AB178535 AB178536 AB527962 TSC_hg19_v1_chr18_-_78005398 BC060797 NM_032510	21380	-	None	None	None	None	None	None	AK056304|LOC100130522|100130522|uncharacterized LOC100130522##AK292566|ADNP2|22850|ADNP homeobox 2##AB020670|ADNP2|22850|ADNP homeobox 2##BC071589|ADNP2|22850|ADNP homeobox 2##NM_014913|ADNP2|22850|ADNP homeobox 2##AB044556|PARD6G|84552|par-6 partitioning defective 6 homolog gamma (C. elegans)##AB178535|PARD6G|84552|par-6 partitioning defective 6 homolog gamma (C. elegans)##AB178536|PARD6G|84552|par-6 partitioning defective 6 homolog gamma (C. elegans)##BC060797|PARD6G|84552|par-6 partitioning defective 6 homolog gamma (C. elegans)##NM_032510|PARD6G|84552|par-6 partitioning defective 6 homolog gamma (C. elegans)	1.990414	0.0	denovo_WM_7:63:0.243	denovo_WM_7:64:0.210	denovo_WM_7:83:0.204	denovo_WM_7:84:0.238
chr19	11079225	11079405	reg1005840.p2	4.572	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-7491	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-7565	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-7600	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	15561	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	120762	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	120817	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	0.0	0.0	
chr17	33393991	33394112	reg1006489.p2	4.571	+	TSC_hg19_v1_chr17_-_33390690 CR933651 NM_001017368	-3334	-	TSC_hg19_v1_chr17_+_33307530 NM_002311 NM_013975 BC068005 AK300363 AK308407 U40671 X84740 BC009026	-86463	+	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	-105462	+	TSC_hg19_v1_chr17_-_33416298 AK093112 AX747930 BC028424	22260	-	AB464124 DQ892318 DQ895520 BC002723 AB013341 AB016223 AB016224 AB016225 Y15572 AF034956 BC014422 TSC_hg19_v1_chr17_-_33446836 AK296241 BX647297 AK301249	52694	-	TSC_hg19_v1_chr17_-_33446880 NM_001142571 NM_002878 NM_133629	52824	-	CR933651|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_001017368|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_002311|LIG3|3980|ligase III, DNA, ATP-dependent##NM_013975|LIG3|3980|ligase III, DNA, ATP-dependent##BC068005|LIG3|3980|ligase III, DNA, ATP-dependent##AK300363|LIG3|3980|ligase III, DNA, ATP-dependent##AK308407|LIG3|3980|ligase III, DNA, ATP-dependent##U40671|LIG3|3980|ligase III, DNA, ATP-dependent##X84740|LIG3|3980|ligase III, DNA, ATP-dependent##BC009026|LIG3|3980|ligase III, DNA, ATP-dependent##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830##AK093112|RFFL|117584|ring finger and FYVE-like domain containing 1##BC028424|RFFL|117584|ring finger and FYVE-like domain containing 1##DQ892318|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##DQ895520|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC002723|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB013341|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016223|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016224|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016225|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##Y15572|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AF034956|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC014422|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK296241|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BX647297|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK301249|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_001142571|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_002878|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_133629|RAD51D|5892|RAD51 homolog D (S. cerevisiae)	0.993792	0.0	denovo_WM_7:92:0.248	denovo_WM_7:93:0.248	denovo_WM_7:94:0.248	denovo_WM_7:95:0.248
chr17	37607613	37607736	reg1009941.p2	4.571	+	CU687400 BC131783 AF055994 BC006517 Y13467 BC060758 TSC_hg19_v1_chr17_-_37607519 AK299789 AK314185 NM_004774	-253	-	TSC_hg19_v1_chr17_-_37557855 BC007557 DQ223959 AK312612 AK291844 AK123048 NM_001184906 NM_032875	-49774	-	BC109231 AJ608762 AK131500 NM_198993	-225695	-	TSC_hg19_v1_chr17_+_37617760 NM_015083 NM_016507 AK302645	10078	+	TSC_hg19_v1_chr17_+_37618267 AF227198 BC140854 AB462974	10612	+	TSC_hg19_v1_chr17_-_37764168 BC022481 NM_006160	156499	-	BC131783|MED1|5469|mediator complex subunit 1##AF055994|MED1|5469|mediator complex subunit 1##BC006517|MED1|5469|mediator complex subunit 1##Y13467|MED1|5469|mediator complex subunit 1##BC060758|MED1|5469|mediator complex subunit 1##AK299789|MED1|5469|mediator complex subunit 1##AK314185|MED1|5469|mediator complex subunit 1##NM_004774|MED1|5469|mediator complex subunit 1##BC007557|FBXL20|84961|F-box and leucine-rich repeat protein 20##DQ223959|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK312612|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK291844|FBXL20|84961|F-box and leucine-rich repeat protein 20##AK123048|FBXL20|84961|F-box and leucine-rich repeat protein 20##NM_001184906|FBXL20|84961|F-box and leucine-rich repeat protein 20##NM_032875|FBXL20|84961|F-box and leucine-rich repeat protein 20##BC109231|STAC2|342667|SH3 and cysteine rich domain 2##AJ608762|STAC2|342667|SH3 and cysteine rich domain 2##AK131500|STAC2|342667|SH3 and cysteine rich domain 2##NM_198993|STAC2|342667|SH3 and cysteine rich domain 2##NM_015083|CDK12|51755|cyclin-dependent kinase 12##NM_016507|CDK12|51755|cyclin-dependent kinase 12##AK302645|CDK12|51755|cyclin-dependent kinase 12##AF227198|CDK12|51755|cyclin-dependent kinase 12##BC140854|CDK12|51755|cyclin-dependent kinase 12##BC022481|NEUROD2|4761|neurogenic differentiation 2##NM_006160|NEUROD2|4761|neurogenic differentiation 2	0.993681	0.0	denovo_WM_7:55:0.838
chr2	134271812	134271957	reg1010863.p2	4.571	+	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-92530	-	AK124659 TSC_hg19_v1_chr2_-_133539761	-732190	-	NM_001077427 AK309668	-842774	-	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	54154	-	NM_002410 D17716 AF113921	740001	+	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	1204672	-	AK092189|NCKAP5|344148|NCK-associated protein 5##AK124659|NCKAP5|344148|NCK-associated protein 5##NM_001077427|LYPD1|116372|LY6/PLAUR domain containing 1##AK309668|LYPD1|116372|LY6/PLAUR domain containing 1##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163	0.0	0.0	
chrX	104163032	104163132	reg1009611.p1	4.571	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	-352090	+	AK290196 TSC_hg19_v1_chrX_+_103810879	-352203	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-663496	-	BC108734 AF285597 BC042547 NM_031274	302271	-	TSC_hg19_v1_chrX_+_105066535 BX538345 NM_198465 BC108702	903456	+	TSC_hg19_v1_chrX_+_105066559 AK131549	903484	+	AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A##BX538345|NRK|203447|Nik related kinase##NM_198465|NRK|203447|Nik related kinase##BC108702|NRK|203447|Nik related kinase##AK131549|NRK|203447|Nik related kinase	0.994375	0.0	denovo_WM_7:21:0.295	denovo_WM_7:22:0.592
chr10	1916330	1916454	reg1013173.p1	4.570	+	AF034837 NM_018702	-136723	-	TSC_hg19_v1_chr10_+_1102822 AK292591	-813566	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-813623	+	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	1193355	+	AK092597 AX747622 NM_001242339	1194426	+	BC021698 TSC_hg19_v1_chr10_+_3151628	1235220	+	AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet##BC021698|PFKP|5214|phosphofructokinase, platelet	0.580168	0.0	denovo_WM_7:9:0.580
chr3	127473122	127473294	reg1011910.p2	4.570	+	TSC_hg19_v1_chr3_+_127391798 NM_032548 NM_172027 BC011858 AK098738 AK130594 AB053324 AB053325 AB053326 AK315148 AF297986 CU680084	-81391	+	TSC_hg19_v1_chr3_+_127348020 BC019330 AY359096 NM_015720 BC052585 AF219137	-125176	+	TSC_hg19_v1_chr3_+_127317274 D21063 BC006165 BC007938 BC017490	-155924	+	CR456835 TSC_hg19_v1_chr3_-_127541359 AK304844 BC000551 U67963 AK315529 BC006230 NM_007283	68222	-	TSC_hg19_v1_chr3_-_127542029 AK091314 AK310874 NM_001003794	68934	-	AK307108 BX537865 TSC_hg19_v1_chr3_+_127634319	161110	+	NM_032548|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##NM_172027|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC011858|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK098738|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK130594|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053324|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053325|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AB053326|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AK315148|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##AF297986|ABTB1|80325|ankyrin repeat and BTB (POZ) domain containing 1##BC019330|PODXL2|50512|podocalyxin-like 2##AY359096|PODXL2|50512|podocalyxin-like 2##NM_015720|PODXL2|50512|podocalyxin-like 2##BC052585|PODXL2|50512|podocalyxin-like 2##AF219137|PODXL2|50512|podocalyxin-like 2##D21063|MCM2|4171|minichromosome maintenance complex component 2##BC006165|MCM2|4171|minichromosome maintenance complex component 2##BC007938|MCM2|4171|minichromosome maintenance complex component 2##BC017490|MCM2|4171|minichromosome maintenance complex component 2##CR456835|MGLL|11343|monoglyceride lipase##AK304844|MGLL|11343|monoglyceride lipase##BC000551|MGLL|11343|monoglyceride lipase##U67963|MGLL|11343|monoglyceride lipase##AK315529|MGLL|11343|monoglyceride lipase##BC006230|MGLL|11343|monoglyceride lipase##NM_007283|MGLL|11343|monoglyceride lipase##AK091314|MGLL|11343|monoglyceride lipase##AK310874|MGLL|11343|monoglyceride lipase##NM_001003794|MGLL|11343|monoglyceride lipase##AK307108|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12##BX537865|KBTBD12|166348|kelch repeat and BTB (POZ) domain containing 12	0.980318	0.0	denovo_WM_7:-3:0.869
chr9	134630908	134631087	reg1007508.p1	4.570	+	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	-15707	-	D21239 NM_005312	-18073	-	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	-45795	-	Z36848 AF104252 AF230382 DQ099387 AB527898 EU446747 TSC_hg19_v1_chr9_-_134955238 BC064608 BC070331	324152	-	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	324253	-	TSC_hg19_v1_chr9_+_135037083 AY358165	406094	+	EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##Z36848|MED27|9442|mediator complex subunit 27##AF104252|MED27|9442|mediator complex subunit 27##AF230382|MED27|9442|mediator complex subunit 27##DQ099387|MED27|9442|mediator complex subunit 27##EU446747|MED27|9442|mediator complex subunit 27##BC064608|MED27|9442|mediator complex subunit 27##BC070331|MED27|9442|mediator complex subunit 27##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AY358165|NTNG2|84628|netrin G2	0.99074	0.0	denovo_WM_7:-71:0.237	denovo_WM_7:-72:0.237	denovo_WM_7:-73:0.237	denovo_WM_7:-74:0.237
chr1	116933042	116933178	reg1008897.p1	4.569	+	AK296362 NM_001160234	-7119	+	AK295095 NM_001160233	-16622	+	AK308418 TSC_hg19_v1_chr1_+_116916033 DQ891882 EU176649	-17032	+	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	28080	-	TSC_hg19_v1_chr1_-_116961216 AK309389	28128	-	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	180505	-	AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##AK295095|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160233|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##AK308418|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##DQ891882|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##EU176649|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule	3.314708	0.015512	denovo_WM_7:11:0.523	denovo_WM_7:40:0.759	denovo_WM_7:56:0.875
chr1	205476790	205476911	reg1009510.p2	4.569	+	AY353237 AY353240 TSC_hg19_v1_chr1_+_205473802 AY353238 BC011526 AY353239	-3028	+	NM_002596 NM_212502 NM_212503 TSC_hg19_v1_chr1_+_205473688 AK293756 AK296320 AK295654	-3145	+	AB084764 AB084765 AB085610 AB096677 AB096678 AB096679 AB096680 AB096681 AB096682 BC036636 AK302392 NM_001001552 NM_001199050 NM_001199051 NM_001199052	-85654	-	AK293816 NM_181644 TSC_hg19_v1_chr1_+_205538141	61277	+	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	61363	+	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	124056	-	AY353237|CDK18|5129|cyclin-dependent kinase 18##AY353240|CDK18|5129|cyclin-dependent kinase 18##AY353238|CDK18|5129|cyclin-dependent kinase 18##BC011526|CDK18|5129|cyclin-dependent kinase 18##AY353239|CDK18|5129|cyclin-dependent kinase 18##NM_002596|CDK18|5129|cyclin-dependent kinase 18##NM_212502|CDK18|5129|cyclin-dependent kinase 18##NM_212503|CDK18|5129|cyclin-dependent kinase 18##AK293756|CDK18|5129|cyclin-dependent kinase 18##AK296320|CDK18|5129|cyclin-dependent kinase 18##AK295654|CDK18|5129|cyclin-dependent kinase 18##AB084764|LEMD1|93273|LEM domain containing 1##AB084765|LEMD1|93273|LEM domain containing 1##AB085610|LEMD1|93273|LEM domain containing 1##AB096677|LEMD1|93273|LEM domain containing 1##AB096678|LEMD1|93273|LEM domain containing 1##AB096679|LEMD1|93273|LEM domain containing 1##AB096680|LEMD1|93273|LEM domain containing 1##AB096681|LEMD1|93273|LEM domain containing 1##AB096682|LEMD1|93273|LEM domain containing 1##BC036636|LEMD1|93273|LEM domain containing 1##AK302392|LEMD1|93273|LEM domain containing 1##NM_001001552|LEMD1|93273|LEM domain containing 1##NM_001199050|LEMD1|93273|LEM domain containing 1##NM_001199051|LEMD1|93273|LEM domain containing 1##NM_001199052|LEMD1|93273|LEM domain containing 1##AK293816|MFSD4|148808|major facilitator superfamily domain containing 4##NM_181644|MFSD4|148808|major facilitator superfamily domain containing 4##BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)	1.969495	0.0	denovo_WM_7:-66:0.940	denovo_WM_7:-81:0.963
chr19	35488402	35488582	reg1011520.p2	4.569	+	NM_175872 TSC_hg19_v1_chr19_-_35454952	-33534	-	AK304550 TSC_hg19_v1_chr19_-_35454915	-33599	-	NM_001099437 NM_001099438 NM_194325 TSC_hg19_v1_chr19_+_35417809 BC142996 BX640666 AK295515 AK290435	-70614	+	TSC_hg19_v1_chr19_+_35491226 AK074864 BC014077 NM_001136199 NM_020895	2772	+	AK074914 TSC_hg19_v1_chr19_+_35491368	2864	+	BC067122 NM_001037 NM_199037 L10338 AK295477 L16242 AK313279 AB528721 AY391842 BT019923	33165	+	NM_175872|ZNF792|126375|zinc finger protein 792##AK304550|ZNF792|126375|zinc finger protein 792##NM_001099437|ZNF30|90075|zinc finger protein 30##NM_001099438|ZNF30|90075|zinc finger protein 30##NM_194325|ZNF30|90075|zinc finger protein 30##BC142996|ZNF30|90075|zinc finger protein 30##BX640666|ZNF30|90075|zinc finger protein 30##AK295515|ZNF30|90075|zinc finger protein 30##AK290435|ZNF30|90075|zinc finger protein 30##AK074864|GRAMD1A|57655|GRAM domain containing 1A##BC014077|GRAMD1A|57655|GRAM domain containing 1A##NM_001136199|GRAMD1A|57655|GRAM domain containing 1A##NM_020895|GRAMD1A|57655|GRAM domain containing 1A##AK074914|GRAMD1A|57655|GRAM domain containing 1A##BC067122|SCN1B|6324|sodium channel, voltage-gated, type I, beta##NM_001037|SCN1B|6324|sodium channel, voltage-gated, type I, beta##NM_199037|SCN1B|6324|sodium channel, voltage-gated, type I, beta##L10338|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AK295477|SCN1B|6324|sodium channel, voltage-gated, type I, beta##L16242|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AK313279|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AY391842|SCN1B|6324|sodium channel, voltage-gated, type I, beta##BT019923|SCN1B|6324|sodium channel, voltage-gated, type I, beta	0.0	0.0	
chr10	93057878	93058054	reg1009971.p1	4.568	+	TSC_hg19_v1_chr10_+_92980539 AL832496	-77432	+	TSC_hg19_v1_chr10_+_92980445 NM_032373	-77558	+	TSC_hg19_v1_chr10_+_92922749 BC007377 BC051845	-135204	+	BC071762 TSC_hg19_v1_chr10_+_93170064	112092	+	TSC_hg19_v1_chr10_+_93170100 NM_173497 NM_182765 AK295723 AK094625 BC040187 EU832472 EU832551 BX537856	112215	+	AK299392 TSC_hg19_v1_chr10_-_93392761 BC012625	334795	-	AL832496|PCGF5|84333|polycomb group ring finger 5##NM_032373|PCGF5|84333|polycomb group ring finger 5##BC007377|PCGF5|84333|polycomb group ring finger 5##BC051845|PCGF5|84333|polycomb group ring finger 5##NM_173497|HECTD2|143279|HECT domain containing 2##NM_182765|HECTD2|143279|HECT domain containing 2##AK295723|HECTD2|143279|HECT domain containing 2##AK094625|HECTD2|143279|HECT domain containing 2##BC040187|HECTD2|143279|HECT domain containing 2##EU832472|HECTD2|143279|HECT domain containing 2##EU832551|HECTD2|143279|HECT domain containing 2##BX537856|HECTD2|143279|HECT domain containing 2##AK299392|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C##BC012625|PPP1R3C|5507|protein phosphatase 1, regulatory subunit 3C	0.988063	0.0	denovo_WM_7:-21:0.237	denovo_WM_7:-22:0.237	denovo_WM_7:-23:0.237	denovo_WM_7:-24:0.237
chr12	105721163	105721319	reg1010508.p4	4.568	+	CU689714 AB527678 DQ892107 DQ895301 TSC_hg19_v1_chr12_-_105629989 AK001521 AK290562 AK297100 BC033731 BC028008 AY113704 NM_001251904 NM_018171	-91331	-	NM_001251905	-94059	-	TSC_hg19_v1_chr12_+_105501556 AB385420	-219674	+	TSC_hg19_v1_chr12_+_105724468 BC013920 NM_001145199 BC067897 BC045812 BC061920 AK056999 AJ311377	3230	+	AJ311378 TSC_hg19_v1_chr12_+_105724640	3398	+	TSC_hg19_v1_chr12_-_106532646 AK289992 AK027302	811441	-	DQ892107|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ895301|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK001521|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK290562|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK297100|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC033731|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC028008|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AY113704|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251904|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_018171|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251905|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC013920|C12orf75|387882|chromosome 12 open reading frame 75##NM_001145199|C12orf75|387882|chromosome 12 open reading frame 75##BC067897|C12orf75|387882|chromosome 12 open reading frame 75##BC045812|C12orf75|387882|chromosome 12 open reading frame 75##BC061920|C12orf75|387882|chromosome 12 open reading frame 75##AK056999|C12orf75|387882|chromosome 12 open reading frame 75##AJ311377|C12orf75|387882|chromosome 12 open reading frame 75##AJ311378|C12orf75|387882|chromosome 12 open reading frame 75##AK289992|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK027302|NUAK1|9891|NUAK family, SNF1-like kinase, 1	1.990124	0.0	denovo_WM_7:65:0.786	denovo_WM_7:80:0.949
chr13	46038799	46038911	reg1010924.p1	4.568	+	TSC_hg19_v1_chr13_-_45992486 BC132739 BC136760 BC144401 AK094133 AK095465 AK302967 NM_001010875	-46361	-	TSC_hg19_v1_chr13_-_45992456 BC129808	-46395	-	AF318337 TSC_hg19_v1_chr13_+_45915726 AK124332	-123242	+	TSC_hg19_v1_chr13_+_46039081 NM_031431 AF349676 AF332595 AK026305 AK225466 AK225952 BX648211 AK294959 AK304248 AK314387 BC038953 CU691622	242	+	BC131494 AK057244 NM_182542	151010	-	AK093129 AX747942 NM_152719	237590	+	BC132739|SLC25A30|253512|solute carrier family 25, member 30##BC136760|SLC25A30|253512|solute carrier family 25, member 30##BC144401|SLC25A30|253512|solute carrier family 25, member 30##AK094133|SLC25A30|253512|solute carrier family 25, member 30##AK095465|SLC25A30|253512|solute carrier family 25, member 30##AK302967|SLC25A30|253512|solute carrier family 25, member 30##NM_001010875|SLC25A30|253512|solute carrier family 25, member 30##BC129808|SLC25A30|253512|solute carrier family 25, member 30##AF318337|LOC100190939|100190939|uncharacterized LOC100190939##AK124332|LOC100190939|100190939|uncharacterized LOC100190939##NM_031431|COG3|83548|component of oligomeric golgi complex 3##AF349676|COG3|83548|component of oligomeric golgi complex 3##AF332595|COG3|83548|component of oligomeric golgi complex 3##AK026305|COG3|83548|component of oligomeric golgi complex 3##AK225466|COG3|83548|component of oligomeric golgi complex 3##AK225952|COG3|83548|component of oligomeric golgi complex 3##BX648211|COG3|83548|component of oligomeric golgi complex 3##AK294959|COG3|83548|component of oligomeric golgi complex 3##AK304248|COG3|83548|component of oligomeric golgi complex 3##AK314387|COG3|83548|component of oligomeric golgi complex 3##BC038953|COG3|83548|component of oligomeric golgi complex 3##BC131494|FAM194B|220081|family with sequence similarity 194, member B##AK057244|FAM194B|220081|family with sequence similarity 194, member B##NM_182542|FAM194B|220081|family with sequence similarity 194, member B##AK093129|SPERT|220082|spermatid associated##NM_152719|SPERT|220082|spermatid associated	0.0	0.0	
chr7	114056530	114056654	reg1008430.p2	4.568	+	TSC_hg19_v1_chr7_+_114055253 AF493430 AF337817 AF467257 BC126104 BC143866 BC143867	-1287	+	AK296957 TSC_hg19_v1_chr7_+_114055213	-1400	+	TSC_hg19_v1_chr7_+_114055117 AY144615 BC018016 NM_001172766 NM_014491 NM_148898 NM_148900	-1495	+	AF467253 NM_001172767 NM_148899 U80741 AF467258 AF467259 TSC_hg19_v1_chr7_+_114066703	10038	+	TSC_hg19_v1_chr7_+_114562148 AF054589 NM_001166345 NM_001166346 NM_199072	505582	+	BC040713 TSC_hg19_v1_chr7_+_114562979 AY196485	506364	+	AF493430|FOXP2|93986|forkhead box P2##AF337817|FOXP2|93986|forkhead box P2##AF467257|FOXP2|93986|forkhead box P2##BC126104|FOXP2|93986|forkhead box P2##BC143866|FOXP2|93986|forkhead box P2##BC143867|FOXP2|93986|forkhead box P2##AK296957|FOXP2|93986|forkhead box P2##AY144615|FOXP2|93986|forkhead box P2##BC018016|FOXP2|93986|forkhead box P2##NM_001172766|FOXP2|93986|forkhead box P2##NM_014491|FOXP2|93986|forkhead box P2##NM_148898|FOXP2|93986|forkhead box P2##NM_148900|FOXP2|93986|forkhead box P2##AF467253|FOXP2|93986|forkhead box P2##NM_001172767|FOXP2|93986|forkhead box P2##NM_148899|FOXP2|93986|forkhead box P2##AF467258|FOXP2|93986|forkhead box P2##AF467259|FOXP2|93986|forkhead box P2##AF054589|MDFIC|29969|MyoD family inhibitor domain containing##NM_001166345|MDFIC|29969|MyoD family inhibitor domain containing##NM_001166346|MDFIC|29969|MyoD family inhibitor domain containing##NM_199072|MDFIC|29969|MyoD family inhibitor domain containing##BC040713|MDFIC|29969|MyoD family inhibitor domain containing##AY196485|MDFIC|29969|MyoD family inhibitor domain containing	0.999427	0.0	
chr1	27745302	27745482	reg1004465.p2	4.567	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-13208	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-26226	+	BC137466 AY358761 NM_207397	-35600	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	71208	-	TSC_hg19_v1_chr1_-_27816670 BC012329	71279	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	71284	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	0.993454	0.0	denovo_WM_7:-16:0.393	denovo_WM_7:-17:0.533
chr19	18390652	18390832	reg1012497.p2	4.567	+	AK057466 AK302431 AL136867 BC112932 NM_001145304 NM_001145305 NM_025249	-5500	-	NM_000923 U66346	-31733	-	AK300888 AK300983 TSC_hg19_v1_chr19_-_18337249 NM_001098818 U88713	-53483	-	TSC_hg19_v1_chr19_+_18391286 AB593186	539	+	BC169275 TSC_hg19_v1_chr19_-_18391478	717	-	BC169273 TSC_hg19_v1_chr19_-_18392160 X51346	1363	-	AK057466|KIAA1683|80726|KIAA1683##AK302431|KIAA1683|80726|KIAA1683##AL136867|KIAA1683|80726|KIAA1683##BC112932|KIAA1683|80726|KIAA1683##NM_001145304|KIAA1683|80726|KIAA1683##NM_001145305|KIAA1683|80726|KIAA1683##NM_025249|KIAA1683|80726|KIAA1683##NM_000923|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U66346|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300888|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300983|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_001098818|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88713|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##BC169273|JUND|3727|jun D proto-oncogene##X51346|JUND|3727|jun D proto-oncogene	0.947383	0.0	denovo_WM_7:-1:0.856
chr2	204358022	204358088	reg1013545.p1	4.567	+	TSC_hg19_v1_chr2_+_204193004 NM_005759 AK311427 AK302853 AK294429 AK299824 AK316000 BC001439 AB590360 AF260261 BT009920 CU674706 DQ890735 DQ893907	-164920	+	TSC_hg19_v1_chr2_+_204103740 AF183412 AK297082 BC093022 BC033752 BC020616 AL832998 AY359068 AK307931 DQ890918 DQ894068 DQ894069 CU676580	-254334	+	NM_177538	-254892	+	TSC_hg19_v1_chr2_-_204399987 BC032486 AK096270 AB053311 AJ584699 AY494951 AY523977 AY523978 NM_203365 NM_213589	42091	-	NM_001243077 NM_001243078 NM_006139 AJ517504 AK313313 J02988 TSC_hg19_v1_chr2_+_204571361 AK303421	213225	+	BC093698 BC112085 TSC_hg19_v1_chr2_+_204571384 AK292986 AB590652 AF222341 AF222342 AF222343 AJ295273	213344	+	NM_005759|ABI2|10152|abl-interactor 2##AK302853|ABI2|10152|abl-interactor 2##AK294429|ABI2|10152|abl-interactor 2##AK299824|ABI2|10152|abl-interactor 2##AK316000|ABI2|10152|abl-interactor 2##BC001439|ABI2|10152|abl-interactor 2##AF260261|ABI2|10152|abl-interactor 2##BT009920|ABI2|10152|abl-interactor 2##DQ890735|ABI2|10152|abl-interactor 2##DQ893907|ABI2|10152|abl-interactor 2##AF183412|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK297082|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC093022|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC033752|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC020616|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AL832998|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AY359068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK307931|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ890918|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894069|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##NM_177538|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK096270|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AB053311|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AJ584699|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY494951|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY523977|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY523978|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_203365|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_213589|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_001243077|CD28|940|CD28 molecule##NM_001243078|CD28|940|CD28 molecule##NM_006139|CD28|940|CD28 molecule##AJ517504|CD28|940|CD28 molecule##AK313313|CD28|940|CD28 molecule##J02988|CD28|940|CD28 molecule##AK303421|CD28|940|CD28 molecule##BC093698|CD28|940|CD28 molecule##BC112085|CD28|940|CD28 molecule##AK292986|CD28|940|CD28 molecule##AF222341|CD28|940|CD28 molecule##AF222342|CD28|940|CD28 molecule##AF222343|CD28|940|CD28 molecule##AJ295273|CD28|940|CD28 molecule	0.0	0.0	
chr6	11258685	11258825	reg1014393.p1	4.567	+	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-25845	-	L43821 TSC_hg19_v1_chr6_-_11232900	-25855	-	U64317 BC020686 TSC_hg19_v1_chr6_-_11232894 BC050740 BC040207	-25864	-	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	123785	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	279743	+	NM_001143948 NM_032744	520524	-	NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##L43821|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##U64317|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC020686|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC050740|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC040207|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105	0.895189	0.0	denovo_WM_7:0:0.532	denovo_WM_7:2:0.334
chr12	117299248	117299329	reg1011345.p2	4.566	+	TSC_hg19_v1_chr12_+_117176119 NM_001109903 NM_032814 BC011878 AK027533	-123169	+	TSC_hg19_v1_chr12_-_117175868 AK222983 AK298857	-123419	-	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	-123550	-	NM_003806 U76376	19943	-	TSC_hg19_v1_chr12_+_117348781 BC037296 NM_012174 NM_153348 AK289621 AF176707 BC075823	49498	+	DQ894644 TSC_hg19_v1_chr12_-_117537222 AF443207 BC015221 NM_001168325 NM_017899 AK000614	237975	-	NM_001109903|RNFT2|84900|ring finger protein, transmembrane 2##NM_032814|RNFT2|84900|ring finger protein, transmembrane 2##BC011878|RNFT2|84900|ring finger protein, transmembrane 2##AK027533|RNFT2|84900|ring finger protein, transmembrane 2##AK222983|C12orf49|79794|chromosome 12 open reading frame 49##AK298857|C12orf49|79794|chromosome 12 open reading frame 49##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49##NM_003806|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##U76376|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##BC037296|FBXW8|26259|F-box and WD repeat domain containing 8##NM_012174|FBXW8|26259|F-box and WD repeat domain containing 8##NM_153348|FBXW8|26259|F-box and WD repeat domain containing 8##AK289621|FBXW8|26259|F-box and WD repeat domain containing 8##AF176707|FBXW8|26259|F-box and WD repeat domain containing 8##DQ894644|TESC|54997|tescalcin##AF443207|TESC|54997|tescalcin##BC015221|TESC|54997|tescalcin##NM_001168325|TESC|54997|tescalcin##NM_017899|TESC|54997|tescalcin##AK000614|TESC|54997|tescalcin	0.0	0.0	
chr1	25073486	25073636	reg1009966.p2	4.566	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-1556	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-1628	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-1730	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	182864	-	TSC_hg19_v1_chr1_-_25256761 AK301044	183178	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	183225	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.996554	0.0	
chr16	46820984	46821138	reg1015935.p1	4.566	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-38899	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-97464	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-97496	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	44027	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	97220	+	NM_001142466 AK094971	98041	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.997626	0.0	denovo_WM_7:-73:0.817
chr2	198105327	198105507	reg1005643.p2	4.566	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-313973	-	BC137150 BC137151 AY358249 NM_213608	-430480	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-441004	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	69965	-	TSC_hg19_v1_chr2_-_198175459 BC063622	70056	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	70102	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.248231	0.0	denovo_WM_7:5:0.212
chr22	36024454	36024607	reg1013138.p2	4.566	+	TSC_hg19_v1_chr22_-_36019368 NM_203377	-5149	-	CR541949 CU013116 CU013404 DQ893679 DQ896050 AB528844 CR456516 TSC_hg19_v1_chr22_-_36013480 AK300657 BC014547 NM_005368 AK314057 NM_203378	-11102	-	BC013419 NM_014310 CR456477	-87137	+	TSC_hg19_v1_chr22_+_36044432 AY014879 NM_030641 BC047864 AX775805 AL834420 AK095881	19906	+	TSC_hg19_v1_chr22_+_36044482 BC038950 AY358210	19970	+	AB528803 AY014878 NM_030642	89387	+	NM_203377|MB|4151|myoglobin##CR541949|MB|4151|myoglobin##CU013116|MB|4151|myoglobin##CU013404|MB|4151|myoglobin##DQ893679|MB|4151|myoglobin##DQ896050|MB|4151|myoglobin##CR456516|MB|4151|myoglobin##AK300657|MB|4151|myoglobin##BC014547|MB|4151|myoglobin##NM_005368|MB|4151|myoglobin##AK314057|MB|4151|myoglobin##NM_203378|MB|4151|myoglobin##BC013419|RASD2|23551|RASD family, member 2##NM_014310|RASD2|23551|RASD family, member 2##CR456477|RASD2|23551|RASD family, member 2##AY014879|APOL6|80830|apolipoprotein L, 6##NM_030641|APOL6|80830|apolipoprotein L, 6##BC047864|APOL6|80830|apolipoprotein L, 6##AL834420|APOL6|80830|apolipoprotein L, 6##AK095881|APOL6|80830|apolipoprotein L, 6##BC038950|APOL6|80830|apolipoprotein L, 6##AY358210|APOL6|80830|apolipoprotein L, 6##AY014878|APOL5|80831|apolipoprotein L, 5##NM_030642|APOL5|80831|apolipoprotein L, 5	2.964887	0.0	denovo_WM_7:-66:0.834	denovo_WM_7:-83:0.888	denovo_WM_7:-98:0.447	denovo_WM_7:-99:0.540
chr6	43731198	43731354	reg1010666.p1	4.566	+	TSC_hg19_v1_chr6_-_43655539 NM_001193343 NM_018135	-75728	-	TSC_hg19_v1_chr6_-_43655521 CU679679 DQ884400 AK300757 BC010364 AK307183 AB049952	-75757	-	NM_001193341 NM_152732 AK291399 BC029519 AK055407	-118480	+	TSC_hg19_v1_chr6_+_43737947 NM_001025366 NM_001025367 NM_001025368 NM_001025369 NM_001025370 NM_001033756 NM_001171622 NM_001171623 NM_001171624 NM_001171625 NM_001171626 NM_001171627 NM_001171628 NM_001171629 NM_001171630 NM_001204384 NM_001204385 NM_003376 BC058855 BC019867	6742	+	TSC_hg19_v1_chr6_+_43738284 AF022375	6971	+	TSC_hg19_v1_chr6_+_43738511 BC011177 BC065522	7258	+	NM_001193343|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_018135|MRPS18A|55168|mitochondrial ribosomal protein S18A##DQ884400|MRPS18A|55168|mitochondrial ribosomal protein S18A##AK300757|MRPS18A|55168|mitochondrial ribosomal protein S18A##BC010364|MRPS18A|55168|mitochondrial ribosomal protein S18A##AK307183|MRPS18A|55168|mitochondrial ribosomal protein S18A##AB049952|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_001193341|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##NM_152732|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##AK291399|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##BC029519|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##AK055407|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##NM_001025366|VEGFA|7422|vascular endothelial growth factor A##NM_001025367|VEGFA|7422|vascular endothelial growth factor A##NM_001025368|VEGFA|7422|vascular endothelial growth factor A##NM_001025369|VEGFA|7422|vascular endothelial growth factor A##NM_001025370|VEGFA|7422|vascular endothelial growth factor A##NM_001033756|VEGFA|7422|vascular endothelial growth factor A##NM_001171622|VEGFA|7422|vascular endothelial growth factor A##NM_001171623|VEGFA|7422|vascular endothelial growth factor A##NM_001171624|VEGFA|7422|vascular endothelial growth factor A##NM_001171625|VEGFA|7422|vascular endothelial growth factor A##NM_001171626|VEGFA|7422|vascular endothelial growth factor A##NM_001171627|VEGFA|7422|vascular endothelial growth factor A##NM_001171628|VEGFA|7422|vascular endothelial growth factor A##NM_001171629|VEGFA|7422|vascular endothelial growth factor A##NM_001171630|VEGFA|7422|vascular endothelial growth factor A##NM_001204384|VEGFA|7422|vascular endothelial growth factor A##NM_001204385|VEGFA|7422|vascular endothelial growth factor A##NM_003376|VEGFA|7422|vascular endothelial growth factor A##BC058855|VEGFA|7422|vascular endothelial growth factor A##BC019867|VEGFA|7422|vascular endothelial growth factor A##AF022375|VEGFA|7422|vascular endothelial growth factor A##BC011177|VEGFA|7422|vascular endothelial growth factor A##BC065522|VEGFA|7422|vascular endothelial growth factor A	0.998203	0.0	denovo_WM_7:18:0.957
chr12	57521398	57521523	reg1012186.p2	4.565	+	TSC_hg19_v1_chr12_-_57505177 NM_001178078 NM_001178080 NM_001178081 NM_003153	-16263	-	TSC_hg19_v1_chr12_-_57505144 AK290431 AK299094 AK316142 BC004973 BC005823	-16315	-	TSC_hg19_v1_chr12_-_57505013 AK316236 BC075852 AK298721 AK312471 U16031	-16455	-	TSC_hg19_v1_chr12_+_57522265 BC052593 BC072015 NM_002332 X13916	822	+	TSC_hg19_v1_chr12_+_57522452 BC045107	1003	+	AY358614 NM_007224 TSC_hg19_v1_chr12_+_57610601 BC036679 AK094231 AK290949 BC053581 CU690992	89204	+	NM_001178078|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_001178080|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_001178081|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##NM_003153|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AK290431|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AK299094|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AK316142|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##BC004973|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##BC005823|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AK316236|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##BC075852|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AK298721|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##AK312471|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##U16031|STAT6|6778|signal transducer and activator of transcription 6, interleukin-4 induced##BC052593|LRP1|4035|low density lipoprotein receptor-related protein 1##BC072015|LRP1|4035|low density lipoprotein receptor-related protein 1##NM_002332|LRP1|4035|low density lipoprotein receptor-related protein 1##X13916|LRP1|4035|low density lipoprotein receptor-related protein 1##BC045107|LRP1|4035|low density lipoprotein receptor-related protein 1##AY358614|NXPH4|11247|neurexophilin 4##NM_007224|NXPH4|11247|neurexophilin 4##BC036679|NXPH4|11247|neurexophilin 4##AK094231|NXPH4|11247|neurexophilin 4##AK290949|NXPH4|11247|neurexophilin 4##BC053581|NXPH4|11247|neurexophilin 4	1.513253	0.0	denovo_WM_7:-39:0.465	denovo_WM_7:-54:0.467
chr16	27274347	27274435	reg1003525.p2	4.565	+	AK297166 NM_001145348	-59096	+	NM_024773 AK023860 BC027911 AK310885 TSC_hg19_v1_chr16_+_27214846 AK225066	-59564	+	NM_001145545 BC031257 AK311574	-196144	+	TSC_hg19_v1_chr16_-_27280055 AK315674	5661	-	TSC_hg19_v1_chr16_-_27280058 AF161451 AF161455 AK056795 NM_145080	5694	-	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	50863	+	AK297166|JMJD5|79831|jumonji domain containing 5##NM_001145348|JMJD5|79831|jumonji domain containing 5##NM_024773|JMJD5|79831|jumonji domain containing 5##AK023860|JMJD5|79831|jumonji domain containing 5##BC027911|JMJD5|79831|jumonji domain containing 5##AK310885|JMJD5|79831|jumonji domain containing 5##AK225066|JMJD5|79831|jumonji domain containing 5##NM_001145545|C16orf82|162083|chromosome 16 open reading frame 82##BC031257|C16orf82|162083|chromosome 16 open reading frame 82##AK311574|C16orf82|162083|chromosome 16 open reading frame 82##AK315674|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161451|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AF161455|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK056795|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##NM_145080|NSMCE1|197370|non-SMC element 1 homolog (S. cerevisiae)##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor	0.0	0.0	
chr17	44233358	44233508	reg1011066.p2	4.565	+	TSC_hg19_v1_chr17_+_44101553 AB073354	-131863	+	BC130319 BC130321 NM_001007532 AY179170	-156803	+	TSC_hg19_v1_chr17_+_44068829 AY526356	-164599	+	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	36721	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	36876	-	AK291259 NM_001193465	69294	-	AB073354|MAPT|4137|microtubule-associated protein tau##BC130319|STH|246744|saitohin##BC130321|STH|246744|saitohin##NM_001007532|STH|246744|saitohin##AY179170|STH|246744|saitohin##AY526356|MAPT|4137|microtubule-associated protein tau##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267	0.0	0.0	
chr3	197382197	197382307	reg1012172.p2	4.565	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-27499	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-82051	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-99410	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	81534	-	AK303462 NM_001011537	94171	+	NM_001145642	94315	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	0.998541	0.0	denovo_WM_7:-7:0.457	denovo_WM_7:-8:0.457
chr5	143057820	143058000	reg1013762.p2	4.565	+	NM_001018074 NM_001018075 NM_001018077	-242834	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-273744	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-273878	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	133848	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	492225	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	492266	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr7	72435984	72436107	reg1010644.p1	4.565	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-10803	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-39171	+	TSC_hg19_v1_chr7_+_72395623 AK123814 AB289621	-40420	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	132986	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	286779	-	AK057366 AY081948 AY081949 NM_178125	306039	-	BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##AK123814|POM121|9883|POM121 membrane glycoprotein##AB289621|POM121|9883|POM121 membrane glycoprotein##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50	1.255936	0.0	denovo_WM_7:-23:0.919	denovo_WM_7:-100:0.206
chr8	126444403	126444523	reg1010225.p1	4.565	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-1884	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-340366	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-340406	-	TSC_hg19_v1_chr8_-_126963395 BX648371	518950	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1126092	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	1126261	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	0.0	0.868541	CTCF.p2:-11:0.869
chr16	30361120	30361300	reg1011917.p1	4.564	+	TSC_hg19_v1_chr16_-_30346695 AK289905 BC063703	-14511	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-150642	+	BC022832 NM_001031827 NM_001039182	-155584	-	BC013854 NM_001243646	5044	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	5390	-	NM_006110 TSC_hg19_v1_chr16_-_30366682	5472	-	AK289905|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC063703|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##BC013854|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_001243646|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_006110|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2	0.0	0.0	
chr2	203350176	203350291	reg1011352.p2	4.564	+	TSC_hg19_v1_chr2_+_203241049 NM_001204	-109187	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	-219661	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	-219777	+	TSC_hg19_v1_chr2_+_203499703 AK096090	149456	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	149626	+	AB053315 TSC_hg19_v1_chr2_+_203500263	150004	+	NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)##BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK096090|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B##AB053315|FAM117B|150864|family with sequence similarity 117, member B	0.992552	0.0	
chr9	34633959	34634078	reg1013481.p1	4.564	+	NM_001017363 AB463419	-6008	-	TSC_hg19_v1_chr9_-_34620504 AK091661 AX747117	-13502	-	TSC_hg19_v1_chr9_-_34620493 NM_007234 NM_024348	-13525	-	TSC_hg19_v1_chr9_-_34637743 AF226604 CR457075 DQ644568 DQ647702 DQ656583 DQ892881 DQ896130 AK098451 BC004899 BC010104 BC007839 U75283 AK299130 AK222899 AK291092	3669	-	TSC_hg19_v1_chr9_-_34637753 AY633611 NM_005866 NM_147157 U79528 BC006307	3750	-	TSC_hg19_v1_chr9_-_34637804 AK130502	3783	-	NM_001017363|ARID3C|138715|AT rich interactive domain 3C (BRIGHT-like)##AK091661|DCTN3|11258|dynactin 3 (p22)##NM_007234|DCTN3|11258|dynactin 3 (p22)##NM_024348|DCTN3|11258|dynactin 3 (p22)##AF226604|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##CR457075|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ644568|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ647702|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ656583|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ892881|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##DQ896130|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK098451|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC004899|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC010104|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC007839|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##U75283|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK299130|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK222899|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK291092|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AY633611|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##NM_005866|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##NM_147157|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##U79528|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##BC006307|SIGMAR1|10280|sigma non-opioid intracellular receptor 1##AK130502|SIGMAR1|10280|sigma non-opioid intracellular receptor 1	0.0	0.843377	CTCF.p2:40:0.843
chr12	54997275	54997366	reg1003033.p2	4.563	+	CR457003 AY063766 U48707 TSC_hg19_v1_chr12_-_54982398 BC022470 NM_006741 AK123969	-14956	-	TSC_hg19_v1_chr12_+_54955248 BX538092 NM_001165975 AK302931 AK126899 AJ401609	-42023	+	TSC_hg19_v1_chr12_+_54943386 BC032226 AB209200 AK302899 U86078	-53910	+	CU686745 CU687522 AF238867 BC069317 NM_033277 BC062217	31331	-	AY590150 AF144011 BC062682 BC069108 NM_053283 EF503687 EF503688 EF503689	44885	-	NM_058173 AF414087 AY359062 BC111421 AY651259	251012	+	CR457003|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##AY063766|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##U48707|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##BC022470|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##NM_006741|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##AK123969|PPP1R1A|5502|protein phosphatase 1, regulatory (inhibitor) subunit 1A##BX538092|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##NM_001165975|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AK302931|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AK126899|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AJ401609|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##BC032226|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AB209200|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AK302899|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##U86078|PDE1B|5153|phosphodiesterase 1B, calmodulin-dependent##AF238867|LACRT|90070|lacritin##BC069317|LACRT|90070|lacritin##NM_033277|LACRT|90070|lacritin##BC062217|LACRT|90070|lacritin##AY590150|DCD|117159|dermcidin##AF144011|DCD|117159|dermcidin##BC062682|DCD|117159|dermcidin##BC069108|DCD|117159|dermcidin##NM_053283|DCD|117159|dermcidin##EF503687|DCD|117159|dermcidin##EF503688|DCD|117159|dermcidin##EF503689|DCD|117159|dermcidin##NM_058173|MUCL1|118430|mucin-like 1##AF414087|MUCL1|118430|mucin-like 1##AY359062|MUCL1|118430|mucin-like 1##BC111421|MUCL1|118430|mucin-like 1##AY651259|MUCL1|118430|mucin-like 1	1.008259	0.0	denovo_WM_7:-55:0.928
chr12	95210748	95210919	reg1014547.p1	4.563	+	EU831778 EU831856 BC040535 NM_020698	-166569	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	-357101	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	-357191	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	186637	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	186683	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	256465	-	EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1	1.968972	0.0	denovo_WM_7:-9:0.456	denovo_WM_7:-12:0.409	denovo_WM_7:-27:0.570
chr16	11907713	11907807	reg1006053.p2	4.563	+	TSC_hg19_v1_chr16_-_11891103 NM_014153	-16645	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	-16709	-	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-71104	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	37644	-	TSC_hg19_v1_chr16_-_12009569 AB590486	101843	-	BC009503 TSC_hg19_v1_chr16_-_12009763 AK095483	101988	-	NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1##BC009503|GSPT1|2935|G1 to S phase transition 1##AK095483|GSPT1|2935|G1 to S phase transition 1	0.0	0.014361	
chr19	10330535	10330715	reg1007178.p2	4.563	+	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-24898	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-25020	-	AB209413 TSC_hg19_v1_chr19_-_10305579	-25068	-	NM_004230 TSC_hg19_v1_chr19_-_10342058	11381	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	32022	+	TSC_hg19_v1_chr19_+_10362889 BC009858	32273	+	BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AB209413|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chr19	2476099	2476217	reg1003101.p2	4.563	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-19198	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-19222	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	-19268	-	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	80	+	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	226537	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	226584	-	NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2##NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7	0.0	0.0	
chr20	32045113	32045223	reg1010817.p1	4.563	+	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	-13607	-	TSC_hg19_v1_chr20_-_31989330 NM_016082 NM_016408	-55829	-	BC001215 TSC_hg19_v1_chr20_-_31989326 AF152097 BC050706 AK027449 AF161516 AK023992 AK222745 AK292075 AK295342 AK309906 AK314532 AY462283 AY462284	-55854	-	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	32668	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	32803	+	BC015066 NM_001039709 NM_005093 AF069747 AF052212	105009	+	DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_016082|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016408|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC001215|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF152097|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC050706|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK027449|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF161516|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK023992|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK222745|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK292075|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK295342|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK309906|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK314532|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462283|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462284|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	0.0	0.945003	CTCF.p2:3:0.945
chr9	139860197	139860308	reg1010944.p1	4.563	+	BC041168 NM_178536 AY301272	-13479	+	NM_000606 M17999 X06465 BC113624 BC113626 M17263 HQ258743 AB590759	-20519	+	BC014130 TSC_hg19_v1_chr9_-_139839140 BC035355 BC031100 NM_018998	-21116	-	TSC_hg19_v1_chr9_+_139871955 NM_000954 AK075333 M61900 AK312817	11709	+	TSC_hg19_v1_chr9_+_139872014 BC005939 AB464076 AY026356 BT019921 BT019922	11770	+	AK127160 NM_207510	17192	+	BC041168|LCN12|286256|lipocalin 12##NM_178536|LCN12|286256|lipocalin 12##AY301272|LCN12|286256|lipocalin 12##NM_000606|C8G|733|complement component 8, gamma polypeptide##M17999|C8G|733|complement component 8, gamma polypeptide##X06465|C8G|733|complement component 8, gamma polypeptide##BC113624|C8G|733|complement component 8, gamma polypeptide##BC113626|C8G|733|complement component 8, gamma polypeptide##M17263|C8G|733|complement component 8, gamma polypeptide##HQ258743|C8G|733|complement component 8, gamma polypeptide##BC014130|FBXW5|54461|F-box and WD repeat domain containing 5##BC035355|FBXW5|54461|F-box and WD repeat domain containing 5##BC031100|FBXW5|54461|F-box and WD repeat domain containing 5##NM_018998|FBXW5|54461|F-box and WD repeat domain containing 5##NM_000954|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AK075333|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##M61900|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AK312817|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##BC005939|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AY026356|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##BT019921|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##BT019922|PTGDS|5730|prostaglandin D2 synthase 21kDa (brain)##AK127160|LCNL1|401562|lipocalin-like 1##NM_207510|LCNL1|401562|lipocalin-like 1	0.99689	0.0	
chr9	27540009	27540153	reg1008362.p2	4.563	+	TSC_hg19_v1_chr9_-_27529809 AL832572 BC033027 AK023266 NM_024761	-10431	-	AF146759 AF315688 NM_020124 AY358855 AB463795	-15759	+	BC137351 BC137352 BC144602 BC014307 AJ278482 NM_001161585 NM_020641	-242960	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	33390	-	AK057806 JN681271 NM_145005	33760	-	AK056372 NM_152570	1179221	-	AL832572|MOB3B|79817|MOB kinase activator 3B##BC033027|MOB3B|79817|MOB kinase activator 3B##AK023266|MOB3B|79817|MOB kinase activator 3B##NM_024761|MOB3B|79817|MOB kinase activator 3B##AF146759|IFNK|56832|interferon, kappa##AF315688|IFNK|56832|interferon, kappa##NM_020124|IFNK|56832|interferon, kappa##AY358855|IFNK|56832|interferon, kappa##BC137351|C9orf11|54586|chromosome 9 open reading frame 11##BC137352|C9orf11|54586|chromosome 9 open reading frame 11##BC144602|C9orf11|54586|chromosome 9 open reading frame 11##BC014307|C9orf11|54586|chromosome 9 open reading frame 11##AJ278482|C9orf11|54586|chromosome 9 open reading frame 11##NM_001161585|C9orf11|54586|chromosome 9 open reading frame 11##NM_020641|C9orf11|54586|chromosome 9 open reading frame 11##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72##AK057806|C9orf72|203228|chromosome 9 open reading frame 72##JN681271|C9orf72|203228|chromosome 9 open reading frame 72##NM_145005|C9orf72|203228|chromosome 9 open reading frame 72##AK056372|LINGO2|158038|leucine rich repeat and Ig domain containing 2##NM_152570|LINGO2|158038|leucine rich repeat and Ig domain containing 2	0.974141	0.0	denovo_WM_7:-26:0.650	denovo_WM_7:-27:0.280
chr12	82752165	82752286	reg1012666.p1	4.562	+	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	-49	-	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-599116	-	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	-599854	-	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	84	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	328475	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	328692	+	BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.0	0.0	
chr3	16926085	16926265	reg1001064.p1	4.562	+	U65918 U66726 U66078 BC027595 NM_001351	-279209	-	BX648638 AK303026 NM_001190811	-279905	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-370951	-	AB029015 NM_001144382	276	+	BC036392 NM_015184	48406	+	AK310539 NM_001134381	815336	-	U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5	0.0	0.0	
chr4	139111733	139111900	reg1008595.p2	4.562	+	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-658174	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-658224	-	NM_001114734 TSC_hg19_v1_chr4_-_135122935	-3988898	-	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	51548	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	825177	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	893587	-	AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like##AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.0	0.0	
chr13	29291473	29291587	reg1007679.p1	4.561	+	TSC_hg19_v1_chr13_+_29233279 AF275807 EF535527 AF262975	-58236	+	GU045555 GU045556 NM_015932 TSC_hg19_v1_chr13_+_29233269 AF077200 AF125097 BC014334 AK312118 BC003390	-58322	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	-222286	-	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	1525	-	BC150245 AB018317 NM_001033602 AB384524	307245	+	BC032481 NM_015233 AK293970 BC119654 BC119655 BC129985	711280	+	AF275807|POMP|51371|proteasome maturation protein##EF535527|POMP|51371|proteasome maturation protein##AF262975|POMP|51371|proteasome maturation protein##GU045555|POMP|51371|proteasome maturation protein##GU045556|POMP|51371|proteasome maturation protein##NM_015932|POMP|51371|proteasome maturation protein##AF077200|POMP|51371|proteasome maturation protein##AF125097|POMP|51371|proteasome maturation protein##BC014334|POMP|51371|proteasome maturation protein##AK312118|POMP|51371|proteasome maturation protein##BC003390|POMP|51371|proteasome maturation protein##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3##BC150245|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AB018317|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_001033602|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC032481|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_015233|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK293970|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119654|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119655|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC129985|MTUS2|23281|microtubule associated tumor suppressor candidate 2	0.632955	0.0	
chr13	42658990	42659136	reg1008391.p1	4.561	+	NM_152910 NM_178009 AB078967 AB078968	-36198	+	AK289546 NM_001204504	-44892	+	TSC_hg19_v1_chr13_-_42535247 AB590583 BC131802 BC053674 NM_001009814 NM_015058	-123874	-	AK302727 NM_001204505 NM_001204506 AK122909 AK302631 BC043292 BC044822	53147	+	TSC_hg19_v1_chr13_+_42846292 AF176555 NM_016248	187222	+	BC040889 NM_033012	477808	+	NM_152910|DGKH|160851|diacylglycerol kinase, eta##NM_178009|DGKH|160851|diacylglycerol kinase, eta##AB078967|DGKH|160851|diacylglycerol kinase, eta##AB078968|DGKH|160851|diacylglycerol kinase, eta##AK289546|DGKH|160851|diacylglycerol kinase, eta##NM_001204504|DGKH|160851|diacylglycerol kinase, eta##BC131802|KIAA0564|23078|KIAA0564##BC053674|KIAA0564|23078|KIAA0564##NM_001009814|KIAA0564|23078|KIAA0564##NM_015058|KIAA0564|23078|KIAA0564##AK302727|DGKH|160851|diacylglycerol kinase, eta##NM_001204505|DGKH|160851|diacylglycerol kinase, eta##NM_001204506|DGKH|160851|diacylglycerol kinase, eta##AK122909|DGKH|160851|diacylglycerol kinase, eta##AK302631|DGKH|160851|diacylglycerol kinase, eta##BC043292|DGKH|160851|diacylglycerol kinase, eta##BC044822|DGKH|160851|diacylglycerol kinase, eta##AF176555|AKAP11|11215|A kinase (PRKA) anchor protein 11##NM_016248|AKAP11|11215|A kinase (PRKA) anchor protein 11##BC040889|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11##NM_033012|TNFSF11|8600|tumor necrosis factor (ligand) superfamily, member 11	0.983379	0.0	denovo_WM_7:2:0.923
chr19	12106468	12106572	reg1008842.p2	4.561	+	AK092240 AK299224 AX747424 NM_001012753 BC105711 BC105712 BC105713	-30638	+	TSC_hg19_v1_chr19_+_12035889 AK299182 AK308305 AL136732 NM_144566 BC144406 BC136777	-70602	+	TSC_hg19_v1_chr19_+_11998643 BC051309 NM_021915 EU446913	-107847	+	TSC_hg19_v1_chr19_-_12146492 AK129553 BC047412	39969	-	TSC_hg19_v1_chr19_-_12146530 AK098300 NM_001080411	40021	-	NM_001080404	57261	-	AK092240|ZNF763|284390|zinc finger protein 763##AK299224|ZNF763|284390|zinc finger protein 763##NM_001012753|ZNF763|284390|zinc finger protein 763##BC105711|ZNF763|284390|zinc finger protein 763##BC105712|ZNF763|284390|zinc finger protein 763##BC105713|ZNF763|284390|zinc finger protein 763##AK299182|ZNF763|284390|zinc finger protein 763##AK308305|ZNF700|90592|zinc finger protein 700##AL136732|ZNF700|90592|zinc finger protein 700##NM_144566|ZNF700|90592|zinc finger protein 700##BC144406|ZNF700|90592|zinc finger protein 700##BC136777|ZNF700|90592|zinc finger protein 700##BC051309|ZNF69|7620|zinc finger protein 69##NM_021915|ZNF69|7620|zinc finger protein 69##EU446913|ZNF69|7620|zinc finger protein 69##BC047412|ZNF433|163059|zinc finger protein 433##AK098300|ZNF433|163059|zinc finger protein 433##NM_001080411|ZNF433|163059|zinc finger protein 433##NM_001080404|ZNF878|729747|zinc finger protein 878	3.024557	0.0	denovo_WM_7:45:0.344	denovo_WM_7:46:0.596	denovo_WM_7:60:0.243	denovo_WM_7:61:0.716	denovo_WM_7:76:0.843
chr1	32729447	32729619	reg1011890.p1	4.560	+	NM_005356 TSC_hg19_v1_chr1_+_32716847 AK098027 X05027 U23852 M36881 X13529	-12648	+	NM_032648 BC004269	-16708	+	TSC_hg19_v1_chr1_-_32707234 AL833686 AK055560	-22278	-	NM_001042771 BC013200 AK303073 U07236 CU680550 DQ891675 DQ894861 AB527809 AJ865079 AF228313	10307	+	AK225555 TSC_hg19_v1_chr1_+_32757704 AK296308 AK313061	28170	+	D50405 NM_004964 TSC_hg19_v1_chr1_+_32757707	28175	+	NM_005356|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK098027|LCK|3932|lymphocyte-specific protein tyrosine kinase##X05027|LCK|3932|lymphocyte-specific protein tyrosine kinase##U23852|LCK|3932|lymphocyte-specific protein tyrosine kinase##M36881|LCK|3932|lymphocyte-specific protein tyrosine kinase##X13529|LCK|3932|lymphocyte-specific protein tyrosine kinase##NM_032648|FAM167B|84734|family with sequence similarity 167, member B##BC004269|FAM167B|84734|family with sequence similarity 167, member B##AL833686|MTMR9LP|339483|myotubularin related protein 9-like, pseudogene##AK055560|MTMR9LP|339483|myotubularin related protein 9-like, pseudogene##NM_001042771|LCK|3932|lymphocyte-specific protein tyrosine kinase##BC013200|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK303073|LCK|3932|lymphocyte-specific protein tyrosine kinase##U07236|LCK|3932|lymphocyte-specific protein tyrosine kinase##DQ891675|LCK|3932|lymphocyte-specific protein tyrosine kinase##DQ894861|LCK|3932|lymphocyte-specific protein tyrosine kinase##AJ865079|LCK|3932|lymphocyte-specific protein tyrosine kinase##AF228313|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK225555|HDAC1|3065|histone deacetylase 1##AK296308|HDAC1|3065|histone deacetylase 1##AK313061|HDAC1|3065|histone deacetylase 1##D50405|HDAC1|3065|histone deacetylase 1##NM_004964|HDAC1|3065|histone deacetylase 1	0.989329	0.0	denovo_WM_7:-8:0.502	denovo_WM_7:-9:0.431
chr1	28441461	28441639	reg1013922.p1	4.559	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-26426	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-155032	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-179989	+	NM_000952 NM_001164723	61904	-	S52624 AK292053 NM_001164721 NM_001164722	78862	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	117981	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	1.932264	0.0	denovo_WM_7:2:0.945	denovo_WM_7:-28:0.521	denovo_WM_7:-30:0.272
chr5	95265421	95265546	reg1011585.p1	4.559	+	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	-106963	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	-107083	-	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-197947	+	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	32015	-	TSC_hg19_v1_chr5_-_95297609 BC028412 NM_012081	32202	-	AK308575 NM_001177876	483205	-	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2##BC028412|ELL2|22936|elongation factor, RNA polymerase II, 2##NM_012081|ELL2|22936|elongation factor, RNA polymerase II, 2##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1	1.677448	0.0	denovo_WM_7:10:0.375	denovo_WM_7:11:0.530	denovo_WM_7:27:0.511
chr11	95954791	95954927	reg1009308.p1	4.558	+	BC052990 BC012086 TSC_hg19_v1_chr11_-_95657272 BC034474 BX647997 NM_001243571 NM_016156 NM_201278 NM_201281 AB028996	-297503	-	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	-297808	-	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	-431019	+	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	121544	-	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	168183	-	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	168315	+	BC052990|MTMR2|8898|myotubularin related protein 2##BC012086|MTMR2|8898|myotubularin related protein 2##BC034474|MTMR2|8898|myotubularin related protein 2##BX647997|MTMR2|8898|myotubularin related protein 2##NM_001243571|MTMR2|8898|myotubularin related protein 2##NM_016156|MTMR2|8898|myotubularin related protein 2##NM_201278|MTMR2|8898|myotubularin related protein 2##NM_201281|MTMR2|8898|myotubularin related protein 2##AB028996|MTMR2|8898|myotubularin related protein 2##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)	0.999922	0.0	
chr2	99379796	99379944	reg1010847.p1	4.558	+	NM_012214 TSC_hg19_v1_chr2_-_99347596	-32257	-	TSC_hg19_v1_chr2_-_99347557 AK314024	-32374	-	AK304393 AK309852 NM_001160154	-99935	-	BC068277 NM_207362	172810	-	BC028366 NM_182911	378165	-	AK126402 AK314133 BC021264 NM_144706	378195	+	NM_012214|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK314024|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK304393|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK309852|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##NM_001160154|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##BC068277|C2orf55|343990|chromosome 2 open reading frame 55##NM_207362|C2orf55|343990|chromosome 2 open reading frame 55##BC028366|TSGA10|80705|testis specific, 10##NM_182911|TSGA10|80705|testis specific, 10##AK314133|C2orf15|150590|chromosome 2 open reading frame 15##BC021264|C2orf15|150590|chromosome 2 open reading frame 15##NM_144706|C2orf15|150590|chromosome 2 open reading frame 15	0.996433	0.0	
chr5	138940949	138941057	reg1011715.p2	4.558	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-78	+	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	-230	+	NM_198282 TSC_hg19_v1_chr5_-_138862344	-78660	-	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	345	+	TSC_hg19_v1_chr5_+_139027874 AK024338	86871	+	TSC_hg19_v1_chr5_+_139027942 BC006428	86927	+	AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_198282|TMEM173|340061|transmembrane protein 173##U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK024338|CXXC5|51523|CXXC finger protein 5##BC006428|CXXC5|51523|CXXC finger protein 5	0.0	0.0	
chr7	105702058	105702238	reg1004471.p2	4.558	+	NM_152750 AK126338 AK131293 AK304118 BC111696 BC111738 AK304352	-98450	+	TSC_hg19_v1_chr7_+_105517250 AK125261	-184884	+	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	-185163	-	X61382 CU677735 TSC_hg19_v1_chr7_-_105752712	50533	-	TSC_hg19_v1_chr7_-_105752748 BC020938 BC016835 NM_182715	50596	-	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	50867	-	NM_152750|CDHR3|222256|cadherin-related family member 3##AK126338|CDHR3|222256|cadherin-related family member 3##AK131293|CDHR3|222256|cadherin-related family member 3##AK304118|CDHR3|222256|cadherin-related family member 3##BC111696|CDHR3|222256|cadherin-related family member 3##BC111738|CDHR3|222256|cadherin-related family member 3##AK304352|CDHR3|222256|cadherin-related family member 3##AK125261|CDHR3|222256|cadherin-related family member 3##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##X61382|SYPL1|6856|synaptophysin-like 1##BC020938|SYPL1|6856|synaptophysin-like 1##BC016835|SYPL1|6856|synaptophysin-like 1##NM_182715|SYPL1|6856|synaptophysin-like 1##EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1	0.0	0.0	
chr8	123487030	123487119	reg1003834.p2	4.558	+	AF221548 BC109071 BC109072 NM_005328 U54804 TSC_hg19_v1_chr8_-_122653681 AK297724 AJ604570	-833448	-	TSC_hg19_v1_chr8_-_121824287 NM_021021 AK292655	-1662568	-	BC098573 TSC_hg19_v1_chr8_-_121824269	-1662804	-	TSC_hg19_v1_chr8_+_123793897 NM_014943	306837	+	BC042145 TSC_hg19_v1_chr8_+_123794000	306920	+	TSC_hg19_v1_chr8_+_123794108 AB020661	307029	+	BC109071|HAS2|3037|hyaluronan synthase 2##BC109072|HAS2|3037|hyaluronan synthase 2##NM_005328|HAS2|3037|hyaluronan synthase 2##U54804|HAS2|3037|hyaluronan synthase 2##AK297724|HAS2|3037|hyaluronan synthase 2##NM_021021|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##AK292655|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##BC098573|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)##NM_014943|ZHX2|22882|zinc fingers and homeoboxes 2##BC042145|ZHX2|22882|zinc fingers and homeoboxes 2##AB020661|ZHX2|22882|zinc fingers and homeoboxes 2	1.99625	0.0	denovo_WM_7:-78:0.397	denovo_WM_7:-79:0.299
chr9	901800	901957	reg1011243.p1	4.558	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-60115	+	TSC_hg19_v1_chr9_+_706828 BC038116 NM_153186	-195048	+	AB205112 TSC_hg19_v1_chr9_+_686677	-215212	+	NM_021240 BC113584 BC117245	75087	+	AF193873 TSC_hg19_v1_chr9_+_977425	75527	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	148466	+	AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC038116|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_153186|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2	0.998167	0.0	
chr10	104517324	104517460	reg1011167.p2	4.557	+	TSC_hg19_v1_chr10_+_104503740 AY656172	-13634	+	TSC_hg19_v1_chr10_+_104503724 NM_001083913	-13667	+	TSC_hg19_v1_chr10_+_104503723 AK308843 AK316452	-13675	+	NM_017787 TSC_hg19_v1_chr10_+_104535970 AY656171 AK056285 BC113857 BC114465	18563	+	TSC_hg19_v1_chr10_+_104590431 CU687687	73052	+	AK308466 BT020000 CU687686 BC062997 BC063388 BC032843 M14564 TSC_hg19_v1_chr10_-_104597171 AK289898 AK094106 AK312235 NM_000102	79792	-	AY656172|C10orf26|54838|chromosome 10 open reading frame 26##NM_001083913|C10orf26|54838|chromosome 10 open reading frame 26##AK308843|C10orf26|54838|chromosome 10 open reading frame 26##AK316452|C10orf26|54838|chromosome 10 open reading frame 26##NM_017787|C10orf26|54838|chromosome 10 open reading frame 26##AY656171|C10orf26|54838|chromosome 10 open reading frame 26##AK056285|C10orf26|54838|chromosome 10 open reading frame 26##BC113857|C10orf26|54838|chromosome 10 open reading frame 26##BC114465|C10orf26|54838|chromosome 10 open reading frame 26##AK308466|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BT020000|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC062997|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC063388|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC032843|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##M14564|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK289898|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK094106|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK312235|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##NM_000102|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1	0.998503	0.0	
chr17	4962623	4962750	reg1008652.p2	4.557	+	AB362534 AK023570 AB362533 BC060810 NM_001104577 NM_017986	-23974	-	TSC_hg19_v1_chr17_+_4901226 NM_006612 AB014606 BC034993 AK307401	-61376	+	AY601906 AY601907 NM_001167985 NM_001167986 NM_001167987 NM_213726	-61782	-	TSC_hg19_v1_chr17_+_4981751 AK055288 NM_153018	19051	+	TSC_hg19_v1_chr17_+_4981774 AK290549 BC142962 BX647638	19099	+	NM_014519 AK316369 TSC_hg19_v1_chr17_-_5026412	63718	-	AB362534|GPR172B|55065|G protein-coupled receptor 172B##AK023570|GPR172B|55065|G protein-coupled receptor 172B##AB362533|GPR172B|55065|G protein-coupled receptor 172B##BC060810|GPR172B|55065|G protein-coupled receptor 172B##NM_001104577|GPR172B|55065|G protein-coupled receptor 172B##NM_017986|GPR172B|55065|G protein-coupled receptor 172B##NM_006612|KIF1C|10749|kinesin family member 1C##AB014606|KIF1C|10749|kinesin family member 1C##BC034993|KIF1C|10749|kinesin family member 1C##AK307401|KIF1C|10749|kinesin family member 1C##AY601906|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AY601907|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167985|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167986|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_001167987|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##NM_213726|INCA1|388324|inhibitor of CDK, cyclin A1 interacting protein 1##AK055288|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_153018|ZFP3|124961|zinc finger protein 3 homolog (mouse)##AK290549|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BC142962|ZFP3|124961|zinc finger protein 3 homolog (mouse)##BX647638|ZFP3|124961|zinc finger protein 3 homolog (mouse)##NM_014519|ZNF232|7775|zinc finger protein 232##AK316369|ZNF232|7775|zinc finger protein 232	0.996888	0.0	
chr17	64709222	64709402	reg1009361.p1	4.557	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-410385	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-410562	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-483787	-	AK290171 TSC_hg19_v1_chr17_+_64831234	121923	+	BC101633 NM_145811 BC101607 AF361351 AF458898	164108	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	251577	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.018853	0.0	
chr3	124827104	124827271	reg1011755.p2	4.557	+	AB384586 NM_020733 TSC_hg19_v1_chr3_-_124774842	-52387	-	BC067235 TSC_hg19_v1_chr3_-_124732404	-94795	-	AF286113 AB035807 AY358831 TSC_hg19_v1_chr3_-_124653596 NM_033049	-173604	-	BC063528 TSC_hg19_v1_chr3_-_124842461	15268	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	103030	-	AK123001 TSC_hg19_v1_chr3_-_124931591 AX721165 AK131070 NM_024628	104398	-	NM_020733|HEG1|57493|HEG homolog 1 (zebrafish)##BC067235|HEG1|57493|HEG homolog 1 (zebrafish)##AF286113|MUC13|56667|mucin 13, cell surface associated##AB035807|MUC13|56667|mucin 13, cell surface associated##AY358831|MUC13|56667|mucin 13, cell surface associated##NM_033049|MUC13|56667|mucin 13, cell surface associated##BC063528|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AK123001|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_024628|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8	0.981819	0.0	denovo_WM_7:28:0.483
chr4	39365780	39365926	reg1009263.p2	4.557	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	-181758	+	AK289785 NM_015990 NM_199039	-302002	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-319415	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	2099	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	42631	+	TSC_hg19_v1_chr4_+_39408557 BC104871 BC113653 BC143575	42696	+	AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta##BC104871|KLB|152831|klotho beta##BC113653|KLB|152831|klotho beta##BC143575|KLB|152831|klotho beta	0.987911	0.0	denovo_WM_7:40:0.242	denovo_WM_7:41:0.625
chr6	76931367	76931488	reg1008309.p2	4.557	+	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	-149128	-	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-472418	+	TSC_hg19_v1_chr6_+_76458926 NM_004999 BX647397 BC012598	-472511	+	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	1241722	-	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	2645828	+	BC064611 TSC_hg19_v1_chr6_-_79675737 AK000712	2744325	-	HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_004999|MYO6|4646|myosin VI##BX647397|MYO6|4646|myosin VI##BC012598|MYO6|4646|myosin VI##BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC064611|PHIP|55023|pleckstrin homology domain interacting protein##AK000712|PHIP|55023|pleckstrin homology domain interacting protein	0.998812	0.0	denovo_WM_7:-70:0.881
chr10	18604491	18604576	reg1011280.p2	4.556	+	NM_000724 AB208917 U95019	-54893	+	NM_201593 NM_201596 NM_201597 S60415 BC136409 AF137376 AF423191 AY393860 AY675091 AK296471 AK311694 AK307526 NM_001167945 NM_201571 NM_201572 AK293837	-174826	+	NM_001145195 NM_152725 AK055061 BC035118 BC047635 AK295294 BC094700	-363704	+	AK310943 NM_201590	25080	+	NM_201570 AK299873 AK295113	85030	+	AK074323 BC035778 NM_182543	335999	-	NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201593|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201596|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201597|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##S60415|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##BC136409|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF137376|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AF423191|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY393860|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AY675091|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK296471|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK311694|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK307526|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_001167945|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201571|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201572|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK293837|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_001145195|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##NM_152725|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK055061|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC035118|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC047635|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK295294|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##BC094700|SLC39A12|221074|solute carrier family 39 (zinc transporter), member 12##AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6	3.008114	0.0	denovo_WM_7:-68:0.987	denovo_WM_7:-83:0.996	denovo_WM_7:-98:0.994
chr11	30939596	30939723	reg1011231.p1	4.556	+	TSC_hg19_v1_chr11_-_30607762 AB209163 AK314833 NM_001145399	-331814	-	TSC_hg19_v1_chr11_-_30605748 AK309809	-333911	-	CU689190 NM_001584 U57911	-337680	-	BX647348 NM_020869	74573	-	AY247970 AK126066 NM_181807	451679	-	TSC_hg19_v1_chr11_+_31391404 NM_181706 AK123087 AL833128 AK289665 BC036571 BC044931 BC063804	451743	+	AB209163|MPPED2|744|metallophosphoesterase domain containing 2##AK314833|MPPED2|744|metallophosphoesterase domain containing 2##NM_001145399|MPPED2|744|metallophosphoesterase domain containing 2##AK309809|MPPED2|744|metallophosphoesterase domain containing 2##NM_001584|MPPED2|744|metallophosphoesterase domain containing 2##U57911|MPPED2|744|metallophosphoesterase domain containing 2##BX647348|DCDC5|100506627|doublecortin domain containing 5##NM_020869|DCDC5|100506627|doublecortin domain containing 5##AY247970|DCDC1|341019|doublecortin domain containing 1##NM_181807|DCDC1|341019|doublecortin domain containing 1##NM_181706|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK123087|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AL833128|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##AK289665|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC036571|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC044931|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24##BC063804|DNAJC24|120526|DnaJ (Hsp40) homolog, subfamily C, member 24	1.40051	0.893332	denovo_WM_7:18:0.704	CTCF.p2:-44:0.893	denovo_WM_7:-58:0.409
chr15	31189040	31189165	reg1013689.p1	4.556	+	BC105788 NM_001039841	-270224	+	TSC_hg19_v1_chr15_+_30918372 BC071990	-270716	+	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	-503390	-	BC047882 NM_001146095 NM_001146094 NM_001146096 NM_014967 TSC_hg19_v1_chr15_+_31196088 BX647391 AK290987	6972	+	CR936734 CR936727 TSC_hg19_v1_chr15_+_31196114 AB023235	7015	+	AK000320 AB528758 AM392869 TSC_hg19_v1_chr15_-_31283808 BC094750 BC063296 NM_017762	94665	-	BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC047882|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146095|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146094|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146096|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_014967|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BX647391|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK290987|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936734|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936727|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AB023235|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK000320|MTMR10|54893|myotubularin related protein 10##AM392869|MTMR10|54893|myotubularin related protein 10##BC094750|MTMR10|54893|myotubularin related protein 10##BC063296|MTMR10|54893|myotubularin related protein 10##NM_017762|MTMR10|54893|myotubularin related protein 10	0.996675	0.0	denovo_WM_7:29:0.896
chr16	87845249	87845351	reg1008719.p2	4.556	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-45730	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-45785	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-208590	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	57775	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	124847	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	139868	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.06453	0.0	
chr17	74733792	74733972	reg1004427.p2	4.556	+	AF015183 NM_001242532 NM_001242533 NM_001242535 NM_001242536 NM_001242537 NM_024311	-357	+	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	-426	-	AB385010 BT007250 CU688224 DQ891210 DQ894393 X62447 BC001303 BC000339 M90104 AK223252 BC066958 BC070086 AK092489 AK093626 AK097069 AK098209 AK123712 AK126432 AK297813 AX748231 TSC_hg19_v1_chr17_-_74733414	-553	-	TSC_hg19_v1_chr17_+_74734111 AK308058 AF015184 AK000233	271	+	TSC_hg19_v1_chr17_+_74864556 AK057861 AB235153 BC041577 NM_001199172 NM_144677 BC062354	130784	+	AB114297 NM_198955 BC144361	134878	+	AF015183|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242532|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242533|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242535|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242536|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242537|MFSD11|79157|major facilitator superfamily domain containing 11##NM_024311|MFSD11|79157|major facilitator superfamily domain containing 11##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2##BT007250|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ891210|SRSF2|6427|serine/arginine-rich splicing factor 2##DQ894393|SRSF2|6427|serine/arginine-rich splicing factor 2##X62447|SRSF2|6427|serine/arginine-rich splicing factor 2##BC001303|SRSF2|6427|serine/arginine-rich splicing factor 2##BC000339|SRSF2|6427|serine/arginine-rich splicing factor 2##M90104|SRSF2|6427|serine/arginine-rich splicing factor 2##AK223252|SRSF2|6427|serine/arginine-rich splicing factor 2##BC066958|SRSF2|6427|serine/arginine-rich splicing factor 2##BC070086|SRSF2|6427|serine/arginine-rich splicing factor 2##AK092489|SRSF2|6427|serine/arginine-rich splicing factor 2##AK093626|SRSF2|6427|serine/arginine-rich splicing factor 2##AK097069|SRSF2|6427|serine/arginine-rich splicing factor 2##AK098209|SRSF2|6427|serine/arginine-rich splicing factor 2##AK123712|SRSF2|6427|serine/arginine-rich splicing factor 2##AK126432|SRSF2|6427|serine/arginine-rich splicing factor 2##AK308058|MFSD11|79157|major facilitator superfamily domain containing 11##AF015184|MFSD11|79157|major facilitator superfamily domain containing 11##AK000233|MFSD11|79157|major facilitator superfamily domain containing 11##AB235153|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC041577|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001199172|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_144677|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC062354|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##AB114297|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_198955|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC144361|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B	0.0	0.0	
chr5	113437017	113437124	reg1010485.p1	4.556	+	TSC_hg19_v1_chr5_+_112849405 AK096486 NM_022828 AK310855 BC019100 BC137285	-587674	+	AK128596 NM_001085377	-612544	-	AB529003 DQ893648 DQ895603 AF348076 AY028964 BC022515 AK313332 AK122904 NM_032028	-666438	-	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	260979	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	261391	+	BC015371 NM_170775 BC040722	332179	+	AK096486|YTHDC2|64848|YTH domain containing 2##NM_022828|YTHDC2|64848|YTH domain containing 2##AK310855|YTHDC2|64848|YTH domain containing 2##BC019100|YTHDC2|64848|YTH domain containing 2##BC137285|YTHDC2|64848|YTH domain containing 2##AK128596|MCC|4163|mutated in colorectal cancers##NM_001085377|MCC|4163|mutated in colorectal cancers##DQ893648|TSSK1B|83942|testis-specific serine kinase 1B##DQ895603|TSSK1B|83942|testis-specific serine kinase 1B##AF348076|TSSK1B|83942|testis-specific serine kinase 1B##AY028964|TSSK1B|83942|testis-specific serine kinase 1B##BC022515|TSSK1B|83942|testis-specific serine kinase 1B##AK313332|TSSK1B|83942|testis-specific serine kinase 1B##AK122904|TSSK1B|83942|testis-specific serine kinase 1B##NM_032028|TSSK1B|83942|testis-specific serine kinase 1B##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	0.977484	0.163426	denovo_WM_7:47:0.388
chr5	141386384	141386480	reg1007895.p1	4.556	+	TSC_hg19_v1_chr5_+_141348760 BX647955	-37678	+	TSC_hg19_v1_chr5_+_141348705 AK023698 AK023884 AK294262 NM_183401	-37729	+	TSC_hg19_v1_chr5_+_141348669 AK295965 AK057868 AB022663	-37767	+	D31766 TSC_hg19_v1_chr5_-_141392593 AK290686 AK022779 AK296452 BC020769 BC022322 NM_005471	6146	-	AK075495 TSC_hg19_v1_chr5_+_141488283	101819	+	TSC_hg19_v1_chr5_+_141488343 NM_030571 AK315481 AY192728	101916	+	BX647955|RNF14|9604|ring finger protein 14##AK023698|RNF14|9604|ring finger protein 14##AK023884|RNF14|9604|ring finger protein 14##AK294262|RNF14|9604|ring finger protein 14##NM_183401|RNF14|9604|ring finger protein 14##AK295965|RNF14|9604|ring finger protein 14##AK057868|RNF14|9604|ring finger protein 14##AB022663|RNF14|9604|ring finger protein 14##D31766|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK290686|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK022779|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK296452|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC020769|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC022322|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##NM_005471|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK075495|NDFIP1|80762|Nedd4 family interacting protein 1##NM_030571|NDFIP1|80762|Nedd4 family interacting protein 1##AK315481|NDFIP1|80762|Nedd4 family interacting protein 1##AY192728|NDFIP1|80762|Nedd4 family interacting protein 1	0.352026	0.0	
chr11	108491586	108491738	reg1007839.p1	4.555	+	BC113119 BC117701 TSC_hg19_v1_chr11_-_108464372 AY099469 NM_015065 AB014524	-27258	-	TSC_hg19_v1_chr11_-_108369112 AK313534 AF533708 BC036526 NM_153705	-122467	-	BC059411 BC029536 AK303096 NM_152587	-153420	-	TSC_hg19_v1_chr11_+_108535795 AK296752 BC091521 AB040537 NM_004398 U28042 AK315216 BC093654 BC093656 AB209884 BC064921 BC049217	44152	+	TSC_hg19_v1_chr11_+_109292850 AK303693 NM_207645	801181	+	BC068577 TSC_hg19_v1_chr11_+_109292911 BC035798	801237	+	BC113119|EXPH5|23086|exophilin 5##BC117701|EXPH5|23086|exophilin 5##AY099469|EXPH5|23086|exophilin 5##NM_015065|EXPH5|23086|exophilin 5##AB014524|EXPH5|23086|exophilin 5##AK313534|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##AF533708|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC036526|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##NM_153705|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC029536|C11orf65|160140|chromosome 11 open reading frame 65##AK303096|C11orf65|160140|chromosome 11 open reading frame 65##NM_152587|C11orf65|160140|chromosome 11 open reading frame 65##AK296752|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC091521|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB040537|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##NM_004398|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##U28042|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK315216|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093654|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093656|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB209884|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC064921|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC049217|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK303693|C11orf87|399947|chromosome 11 open reading frame 87##NM_207645|C11orf87|399947|chromosome 11 open reading frame 87##BC068577|C11orf87|399947|chromosome 11 open reading frame 87##BC035798|C11orf87|399947|chromosome 11 open reading frame 87	0.0	0.0	
chr1	206990341	206990519	reg1011223.p2	4.555	+	AY040367 NM_153758 AB463800	-18204	+	AF043333 AY029171 CR541993 CR542028 AB587432 M57627 BC104252 BC104253 BC022315 NM_000572 EU751618 EU751619	-44551	-	TSC_hg19_v1_chr1_+_206858308 BC036060 NM_004759 NM_032960 BC052584 AB590627 X75346	-131959	+	AF453946 NM_013371	11791	+	AF224266 NM_018724 BC117386 BC117390 BC074948 BC074949 AB590628 AY876922 BC069311 BC069364 BC069398 BC069425 BC069449 BC069487 BC069523 BC069559 CU686884 HQ258739	48745	+	NM_001185156 NM_001185157 NM_001185158 NM_006850 AY641440 AY641441 U16261 BC009681	80370	+	AY040367|IL19|29949|interleukin 19##NM_153758|IL19|29949|interleukin 19##AF043333|IL10|3586|interleukin 10##AY029171|IL10|3586|interleukin 10##CR541993|IL10|3586|interleukin 10##CR542028|IL10|3586|interleukin 10##M57627|IL10|3586|interleukin 10##BC104252|IL10|3586|interleukin 10##BC104253|IL10|3586|interleukin 10##BC022315|IL10|3586|interleukin 10##NM_000572|IL10|3586|interleukin 10##BC036060|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_004759|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##NM_032960|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##BC052584|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##X75346|MAPKAPK2|9261|mitogen-activated protein kinase-activated protein kinase 2##AF453946|IL19|29949|interleukin 19##NM_013371|IL19|29949|interleukin 19##AF224266|IL20|50604|interleukin 20##NM_018724|IL20|50604|interleukin 20##BC117386|IL20|50604|interleukin 20##BC117390|IL20|50604|interleukin 20##BC074948|IL20|50604|interleukin 20##BC074949|IL20|50604|interleukin 20##AY876922|IL20|50604|interleukin 20##BC069311|IL20|50604|interleukin 20##BC069364|IL20|50604|interleukin 20##BC069398|IL20|50604|interleukin 20##BC069425|IL20|50604|interleukin 20##BC069449|IL20|50604|interleukin 20##BC069487|IL20|50604|interleukin 20##BC069523|IL20|50604|interleukin 20##BC069559|IL20|50604|interleukin 20##HQ258739|IL20|50604|interleukin 20##NM_001185156|IL24|11009|interleukin 24##NM_001185157|IL24|11009|interleukin 24##NM_001185158|IL24|11009|interleukin 24##NM_006850|IL24|11009|interleukin 24##AY641440|IL24|11009|interleukin 24##AY641441|IL24|11009|interleukin 24##U16261|IL24|11009|interleukin 24##BC009681|IL24|11009|interleukin 24	0.041615	0.0	
chr12	133349160	133349315	reg1010394.p1	4.555	+	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-10817	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-42679	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	-61801	+	BC048203 TSC_hg19_v1_chr12_-_133372555	23320	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	55742	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	56061	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3	1.063217	0.0	
chr7	122214516	122214696	reg1010423.p1	4.555	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-270017	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-430317	-	TSC_hg19_v1_chr7_+_121513214 U88967	-701385	+	BC022038 AF447589 NM_139175 AK098524	124591	-	AK058116 AK098654 BC029264 NM_198085	128386	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	311892	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	1.997791	0.0	denovo_WM_7:93:0.940
chr7	129572649	129572797	reg1008444.p1	4.555	+	L22454 NM_001040110	-302806	+	AK293351 TSC_hg19_v1_chr7_+_129251621 BC016925 AK290891	-321111	+	TSC_hg19_v1_chr7_+_129251531 NM_005011	-321182	+	BC006277 TSC_hg19_v1_chr7_-_129592785 NM_001202498	20028	-	TSC_hg19_v1_chr7_-_129592801 NM_003344 NM_182697	20086	-	TSC_hg19_v1_chr7_-_129691215 BC000190 AB463378 AJ537494 AM393415 CU679956 BC011551 AF151050 AK001317 AK022373 NM_016478	118498	-	L22454|NRF1|4899|nuclear respiratory factor 1##NM_001040110|NRF1|4899|nuclear respiratory factor 1##AK293351|NRF1|4899|nuclear respiratory factor 1##BC016925|NRF1|4899|nuclear respiratory factor 1##AK290891|NRF1|4899|nuclear respiratory factor 1##NM_005011|NRF1|4899|nuclear respiratory factor 1##BC006277|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_001202498|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_003344|UBE2H|7328|ubiquitin-conjugating enzyme E2H##NM_182697|UBE2H|7328|ubiquitin-conjugating enzyme E2H##BC000190|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AJ537494|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AM393415|ZC3HC1|51530|zinc finger, C3HC-type containing 1##BC011551|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AF151050|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK001317|ZC3HC1|51530|zinc finger, C3HC-type containing 1##AK022373|ZC3HC1|51530|zinc finger, C3HC-type containing 1##NM_016478|ZC3HC1|51530|zinc finger, C3HC-type containing 1	0.999644	0.0	
chr2	96987739	96987919	reg1005688.p1	4.554	+	BC015425 TSC_hg19_v1_chr2_-_96987632 BC053735	-199	-	NM_014014 TSC_hg19_v1_chr2_-_96971311	-16506	-	TSC_hg19_v1_chr2_-_96971269 AK090671 AX746566	-16553	-	TSC_hg19_v1_chr2_+_96991042 NM_001008949 NM_001163523 BC073153	3257	+	NM_178495 NM_001163524 BC034503	4119	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	13647	+	NM_014014|SNRNP200|23020|small nuclear ribonucleoprotein 200kDa (U5)##AK090671|SNRNP200|23020|small nuclear ribonucleoprotein 200kDa (U5)##NM_001008949|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163523|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC073153|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H	0.0	0.0	
chr6	160399804	160399897	reg1001740.p2	4.554	+	TSC_hg19_v1_chr6_+_160390137 NM_000876 Y00285 J03528	-9717	+	BC069142 BC069581 BC110454 NM_002377 CU686912 CR542261	-71871	+	TSC_hg19_v1_chr6_+_160221313 AK097559 NM_173516 AK093139 AX747947 BC112246	-178507	+	NM_003057 NM_153187 X98332 BC126364 AK289887 U77086 AB527951 HQ258293	143064	+	CU689064 BC039899 AK290787 X98333 AB075951 BC030978 NM_003058	280025	-	BC144280 TSC_hg19_v1_chr6_+_160769404 AK314590 AJ001417 NM_021977	369544	+	NM_000876|IGF2R|3482|insulin-like growth factor 2 receptor##Y00285|IGF2R|3482|insulin-like growth factor 2 receptor##J03528|IGF2R|3482|insulin-like growth factor 2 receptor##BC069142|MAS1|4142|MAS1 oncogene##BC069581|MAS1|4142|MAS1 oncogene##BC110454|MAS1|4142|MAS1 oncogene##NM_002377|MAS1|4142|MAS1 oncogene##CR542261|MAS1|4142|MAS1 oncogene##AK097559|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_173516|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##AK093139|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##BC112246|PNLDC1|154197|poly(A)-specific ribonuclease (PARN)-like domain containing 1##NM_003057|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##NM_153187|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##X98332|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC126364|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##AK289887|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##U77086|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##HQ258293|SLC22A1|6580|solute carrier family 22 (organic cation transporter), member 1##BC039899|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AK290787|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##X98333|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##AB075951|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC030978|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##NM_003058|SLC22A2|6582|solute carrier family 22 (organic cation transporter), member 2##BC144280|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AK314590|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##AJ001417|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3##NM_021977|SLC22A3|6581|solute carrier family 22 (extraneuronal monoamine transporter), member 3	0.145975	0.0	
chrX	77811056	77811200	reg1012286.p1	4.554	+	BC035750 DQ131801 DQ131800 AK023929 DQ131802 NM_006639 AK313643 DQ131799	-228045	-	AB529179 DQ891928 DQ895115 BC071649 TSC_hg19_v1_chrX_-_77395133 AF220509 BC009566 AK312579 BC010350 BC146952 BC146960 NM_015975	-415985	-	AB062432 TSC_hg19_v1_chrX_+_77359778 BC104837 BC113568 BC023234 AY423725 AB385546 CR456716 HQ258236	-451326	+	AK096184 NM_152694	103696	-	NM_005296 AK314134	192080	+	NM_014499 NM_198333 AK313218 AK292138 BC051875	389744	+	BC035750|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131801|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131800|CYSLTR1|10800|cysteinyl leukotriene receptor 1##AK023929|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131802|CYSLTR1|10800|cysteinyl leukotriene receptor 1##NM_006639|CYSLTR1|10800|cysteinyl leukotriene receptor 1##AK313643|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131799|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ891928|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##DQ895115|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##BC071649|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##AF220509|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##BC009566|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##AK312579|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##BC010350|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##BC146952|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##BC146960|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##NM_015975|TAF9B|51616|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa##AB062432|PGK1|5230|phosphoglycerate kinase 1##BC104837|PGK1|5230|phosphoglycerate kinase 1##BC113568|PGK1|5230|phosphoglycerate kinase 1##BC023234|PGK1|5230|phosphoglycerate kinase 1##AY423725|PGK1|5230|phosphoglycerate kinase 1##CR456716|PGK1|5230|phosphoglycerate kinase 1##HQ258236|PGK1|5230|phosphoglycerate kinase 1##AK096184|ZCCHC5|203430|zinc finger, CCHC domain containing 5##NM_152694|ZCCHC5|203430|zinc finger, CCHC domain containing 5##NM_005296|LPAR4|2846|lysophosphatidic acid receptor 4##AK314134|LPAR4|2846|lysophosphatidic acid receptor 4##NM_014499|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_198333|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK313218|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK292138|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##BC051875|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10	0.0	0.249381	CTCF.p2:-48:0.249
chr12	121974230	121974410	reg1001022.p1	4.553	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-69246	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-136356	+	AK025614 NM_001137559	-182309	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	43939	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	44594	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	90323	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	0.0	0.0	
chr3	108744065	108744220	reg1010390.p1	4.553	+	AF110003 EU832759 GQ129299 AF110002 BC103993 BC103994 AB593147 NM_005459	-71531	-	AK291991 AJ240085 AF161547 NM_016388 BC025713 AJ224878	-202548	+	HQ258043 AM050721 BC113502 BC113528 BC069318 AF290873 AF323084 AY358655 NM_032579 TSC_hg19_v1_chr3_-_108476258	-267997	-	CU690636 BC050307 AK302642 AF084946 BC028680 NM_014429	92808	-	AK026416 TSC_hg19_v1_chr3_+_108855566	111421	+	BC018070 AY283672 NM_138815	291159	-	AF110003|GUCA1C|9626|guanylate cyclase activator 1C##EU832759|GUCA1C|9626|guanylate cyclase activator 1C##GQ129299|GUCA1C|9626|guanylate cyclase activator 1C##AF110002|GUCA1C|9626|guanylate cyclase activator 1C##BC103993|GUCA1C|9626|guanylate cyclase activator 1C##BC103994|GUCA1C|9626|guanylate cyclase activator 1C##AB593147|GUCA1C|9626|guanylate cyclase activator 1C##NM_005459|GUCA1C|9626|guanylate cyclase activator 1C##AK291991|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ240085|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AF161547|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##NM_016388|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##BC025713|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##AJ224878|TRAT1|50852|T cell receptor associated transmembrane adaptor 1##HQ258043|RETNLB|84666|resistin like beta##AM050721|RETNLB|84666|resistin like beta##BC113502|RETNLB|84666|resistin like beta##BC113528|RETNLB|84666|resistin like beta##BC069318|RETNLB|84666|resistin like beta##AF290873|RETNLB|84666|resistin like beta##AF323084|RETNLB|84666|resistin like beta##AY358655|RETNLB|84666|resistin like beta##NM_032579|RETNLB|84666|resistin like beta##BC050307|MORC1|27136|MORC family CW-type zinc finger 1##AK302642|MORC1|27136|MORC family CW-type zinc finger 1##AF084946|MORC1|27136|MORC family CW-type zinc finger 1##BC028680|MORC1|27136|MORC family CW-type zinc finger 1##NM_014429|MORC1|27136|MORC family CW-type zinc finger 1##AK026416|FLJ22763|401081|uncharacterized LOC401081##BC018070|DPPA2|151871|developmental pluripotency associated 2##AY283672|DPPA2|151871|developmental pluripotency associated 2##NM_138815|DPPA2|151871|developmental pluripotency associated 2	1.965232	0.0	denovo_WM_7:87:0.804	denovo_WM_7:102:0.444	denovo_WM_7:103:0.459
chr4	22629595	22629775	reg1006649.p2	4.553	+	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	-112131	-	NM_147182 TSC_hg19_v1_chr4_-_21950396	-679301	-	BX648990 DQ148490 NM_001035003	-930368	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	64907	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1261968	-	AF279891 TSC_hg19_v1_chr4_-_24586127	1956391	-	AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF279891|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.889221	0.0	denovo_WM_7:69:0.889
chr4	39951294	39951474	reg1007626.p2	4.553	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-251580	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-310828	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-421758	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	27954	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	28209	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	107148	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.982456	0.0	denovo_WM_7:65:0.498
chr12	69255674	69255840	reg1010437.p1	4.552	+	EU076746 EU076747 EU076748 EU076749 TSC_hg19_v1_chr12_+_69202803	-52956	+	TSC_hg19_v1_chr12_+_69201980 AK290341	-53765	+	TSC_hg19_v1_chr12_+_69201958 BC009893 BC013887 BC067077 M92424 NM_002392 Z12020	-53846	+	TSC_hg19_v1_chr12_-_69326952 AF368463 AK313180 BC022276 NM_001005502 NM_198320	71205	-	J04970 NM_001874 AK127859	101262	-	NM_007007 TSC_hg19_v1_chr12_+_69633348 AK223568 AK299928	377576	+	EU076746|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076747|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076748|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076749|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AK290341|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##M92424|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##NM_002392|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##Z12020|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AF368463|CPM|1368|carboxypeptidase M##AK313180|CPM|1368|carboxypeptidase M##BC022276|CPM|1368|carboxypeptidase M##NM_001005502|CPM|1368|carboxypeptidase M##NM_198320|CPM|1368|carboxypeptidase M##J04970|CPM|1368|carboxypeptidase M##NM_001874|CPM|1368|carboxypeptidase M##AK127859|CPM|1368|carboxypeptidase M##NM_007007|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK223568|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK299928|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa	0.999683	0.0	
chr21	43430137	43430261	reg1009545.p1	4.552	+	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	-56116	-	BC062323 AL833323 NM_199050	-83410	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-130701	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	272	-	AB051810 AB051811 NM_001199527 NM_001199528	52868	+	AB096965 AY771619 AY771620 NM_001004416 NM_173568	61226	+	AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1##AB096965|UMODL1|89766|uromodulin-like 1##AY771619|UMODL1|89766|uromodulin-like 1##AY771620|UMODL1|89766|uromodulin-like 1##NM_001004416|UMODL1|89766|uromodulin-like 1##NM_173568|UMODL1|89766|uromodulin-like 1	0.0	0.0	
chr5	169280691	169280790	reg1012320.p1	4.552	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-216440	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-216496	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-270019	+	AK055998 NM_001129891	127003	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	252231	+	BC030767 NM_001102609 BC092511	379256	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	2.961118	0.0	denovo_WM_7:74:0.353	denovo_WM_7:75:0.637	denovo_WM_7:89:0.236	denovo_WM_7:90:0.751	denovo_WM_7:105:0.866
chr6	116212394	116212552	reg1013772.p1	4.552	+	AF503292 NM_153612 BC093911 BC093913	-1828449	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-1920137	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	-1920201	-	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	169409	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	209536	+	AK097758 TSC_hg19_v1_chr6_-_116422450	209957	-	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1	0.0	0.0	
chr8	40686450	40686571	reg1014685.p1	4.552	+	BC021672 NM_020130 BC020623 TSC_hg19_v1_chr8_+_40011000 AF268037 AK026240 EU832636 EU832712	-675492	+	AK128691 NM_194294	-894037	+	NM_002164 AK313259 BC027882 X17668 AY221100 CU693308 JF772862	-915126	+	BC019598 TSC_hg19_v1_chr8_-_40755346 AK023904 NM_001135731 NM_024645	68827	-	TSC_hg19_v1_chr8_-_41166991 BC004466 AF017987 AF001900 AF056087 AK293090 BC036503 NM_003012	480520	-	TSC_hg19_v1_chr8_+_41348077 NM_001174124 NM_016099	661563	+	BC021672|C8orf4|56892|chromosome 8 open reading frame 4##NM_020130|C8orf4|56892|chromosome 8 open reading frame 4##BC020623|C8orf4|56892|chromosome 8 open reading frame 4##AF268037|C8orf4|56892|chromosome 8 open reading frame 4##AK026240|C8orf4|56892|chromosome 8 open reading frame 4##EU832636|C8orf4|56892|chromosome 8 open reading frame 4##EU832712|C8orf4|56892|chromosome 8 open reading frame 4##AK128691|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_194294|IDO2|169355|indoleamine 2,3-dioxygenase 2##NM_002164|IDO1|3620|indoleamine 2,3-dioxygenase 1##AK313259|IDO1|3620|indoleamine 2,3-dioxygenase 1##BC027882|IDO1|3620|indoleamine 2,3-dioxygenase 1##X17668|IDO1|3620|indoleamine 2,3-dioxygenase 1##AY221100|IDO1|3620|indoleamine 2,3-dioxygenase 1##JF772862|IDO1|3620|indoleamine 2,3-dioxygenase 1##BC019598|ZMAT4|79698|zinc finger, matrin-type 4##AK023904|ZMAT4|79698|zinc finger, matrin-type 4##NM_001135731|ZMAT4|79698|zinc finger, matrin-type 4##NM_024645|ZMAT4|79698|zinc finger, matrin-type 4##BC004466|SFRP1|6422|secreted frizzled-related protein 1##AF017987|SFRP1|6422|secreted frizzled-related protein 1##AF001900|SFRP1|6422|secreted frizzled-related protein 1##AF056087|SFRP1|6422|secreted frizzled-related protein 1##AK293090|SFRP1|6422|secreted frizzled-related protein 1##BC036503|SFRP1|6422|secreted frizzled-related protein 1##NM_003012|SFRP1|6422|secreted frizzled-related protein 1##NM_001174124|GOLGA7|51125|golgin A7##NM_016099|GOLGA7|51125|golgin A7	0.996808	0.0	denovo_WM_7:-24:0.227	denovo_WM_7:-25:0.742
chr19	45506782	45506962	reg1010036.p1	4.551	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-2130	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-48218	+	NM_001294 BC004865 TSC_hg19_v1_chr19_+_45458636 AK074935 AK223553 AF037339 AK075262	-48252	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	35451	+	BC019352 NM_145288	72815	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	75641	+	M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##NM_001294|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC004865|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK074935|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK223553|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AF037339|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK075262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7	0.0	0.0	
chr21	45358851	45359031	reg1008159.p3	4.551	+	AK300562 NM_001037553	-13663	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-73818	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-73881	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	73399	+	TSC_hg19_v1_chr21_+_45527202 AK314184	168261	+	TSC_hg19_v1_chr21_+_45527251 NM_005049	168287	+	AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##NM_005049|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.0	0.0	
chr3	45596187	45596330	reg1008852.p2	4.551	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-166194	+	TSC_hg19_v1_chr3_-_45267804 NM_015444	-328433	-	AB078417 AF438313 TSC_hg19_v1_chr3_-_45267780 BC057390	-328550	-	TSC_hg19_v1_chr3_+_45635397 M80651	39327	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	40013	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	134475	+	AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015444|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##AB078417|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##AF438313|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##BC057390|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##M80651|LIMD1|8994|LIM domains containing 1##BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	0.999387	0.015425	denovo_WM_7:-7:0.739
chr4	153618349	153618529	reg1008812.p2	4.551	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	-17239	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-161006	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-162145	-	BC037869 NM_145720	82464	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	82582	+	TSC_hg19_v1_chr4_+_153701117 AK290472 U52521 BC103759 BC105114 BC105116 BC143675 BC143676 AK096509	82688	+	BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK290472|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##U52521|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC103759|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105114|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC105116|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143675|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##BC143676|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK096509|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	0.148857	0.0	
chr9	130643322	130643490	reg1012757.p1	4.551	+	BC001116 BC036803 AK313758 TSC_hg19_v1_chr9_-_130639955 BC100022 NM_000476	-3426	-	TSC_hg19_v1_chr9_-_130617036 NM_000118 NM_001114753	-26379	-	TSC_hg19_v1_chr9_-_130616968 AK222669 AK302455	-26431	-	AK300534 TSC_hg19_v1_chr9_-_130659688 AK057100	16222	-	TSC_hg19_v1_chr9_-_130661803 AK226174	18393	-	TSC_hg19_v1_chr9_-_130661867 BC006564 BC007802 BC016299 NM_013443	18441	-	BC001116|AK1|203|adenylate kinase 1##BC036803|AK1|203|adenylate kinase 1##AK313758|AK1|203|adenylate kinase 1##BC100022|AK1|203|adenylate kinase 1##NM_000476|AK1|203|adenylate kinase 1##NM_000118|ENG|2022|endoglin##NM_001114753|ENG|2022|endoglin##AK222669|ENG|2022|endoglin##AK302455|ENG|2022|endoglin##AK300534|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK057100|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK226174|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC006564|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC007802|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC016299|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##NM_013443|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	0.99992	0.0	
chr12	94601761	94601827	reg1012179.p1	4.550	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	-59290	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-530611	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-636193	-	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	251737	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	251848	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	251938	-	AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41	0.0	0.0	
chr20	19915450	19915630	reg1009733.p1	4.550	+	BC128065 NM_018993 TSC_hg19_v1_chr20_+_19870217 AB060339	-45313	+	TSC_hg19_v1_chr20_+_19867169 AK094884 NM_001242581	-48397	+	TSC_hg19_v1_chr20_+_19193372 AB587438 AF169257	-722087	+	TSC_hg19_v1_chr20_+_19915762 BC034698 AL136924	209	+	TSC_hg19_v1_chr20_+_19955789 M37190	40319	+	TSC_hg19_v1_chr20_+_19997934 NM_016100 NM_181528	82393	+	BC128065|RIN2|54453|Ras and Rab interactor 2##NM_018993|RIN2|54453|Ras and Rab interactor 2##AB060339|RIN2|54453|Ras and Rab interactor 2##AK094884|RIN2|54453|Ras and Rab interactor 2##NM_001242581|RIN2|54453|Ras and Rab interactor 2##AF169257|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##BC034698|RIN2|54453|Ras and Rab interactor 2##AL136924|RIN2|54453|Ras and Rab interactor 2##M37190|RIN2|54453|Ras and Rab interactor 2##NM_016100|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##NM_181528|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit	0.995871	0.0	denovo_WM_7:79:0.718
chr2	239034351	239034490	reg1011354.p1	4.550	+	NM_194312 AK124559	-25433	+	TSC_hg19_v1_chr2_+_238969747 BC000586 AK293283	-64653	+	TSC_hg19_v1_chr2_+_238969669 AK301009 BC007891 AF175767 AK298409 DQ893234 DQ896564 CU675851	-64740	+	NM_198582	12942	+	CR533533 FJ491380 FJ491381 CU675457 AB590373 DQ892800 DQ896047 EU832279 EU832364 TSC_hg19_v1_chr2_-_239112267 AL136850 BC035746 AY024365	77819	-	TSC_hg19_v1_chr2_-_239112326 BC006576 HQ658059 HQ658060 NM_030768	77902	-	NM_194312|ESPNL|339768|espin-like##AK124559|ESPNL|339768|espin-like##BC000586|SCLY|51540|selenocysteine lyase##AK293283|SCLY|51540|selenocysteine lyase##AK301009|SCLY|51540|selenocysteine lyase##BC007891|SCLY|51540|selenocysteine lyase##AF175767|SCLY|51540|selenocysteine lyase##AK298409|SCLY|51540|selenocysteine lyase##DQ893234|SCLY|51540|selenocysteine lyase##DQ896564|SCLY|51540|selenocysteine lyase##NM_198582|KLHL30|377007|kelch-like 30 (Drosophila)##CR533533|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##FJ491380|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##FJ491381|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##DQ892800|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##DQ896047|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##EU832279|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##EU832364|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AL136850|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##BC035746|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AY024365|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##BC006576|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##HQ658059|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##HQ658060|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##NM_030768|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase	0.0	0.0	
chr3	49340826	49340928	reg1007155.p1	4.550	+	BC032616 CU687502 CU691014 AK125642 BC061697 BC053629 NM_198562	-26483	-	AK303033 NM_001135197 BC015057 AK058049	-103917	+	BC036202 NM_178173	-105017	+	TSC_hg19_v1_chr3_-_49377456 AF017306	36570	-	AF017305 U20657 TSC_hg19_v1_chr3_-_49377473 AK222725 AK223292 BC068017	36591	-	TSC_hg19_v1_chr3_-_49377482 AK291795	36603	-	BC032616|C3orf62|375341|chromosome 3 open reading frame 62##AK125642|C3orf62|375341|chromosome 3 open reading frame 62##BC061697|C3orf62|375341|chromosome 3 open reading frame 62##BC053629|C3orf62|375341|chromosome 3 open reading frame 62##NM_198562|C3orf62|375341|chromosome 3 open reading frame 62##AK303033|CCDC36|339834|coiled-coil domain containing 36##NM_001135197|CCDC36|339834|coiled-coil domain containing 36##BC015057|CCDC36|339834|coiled-coil domain containing 36##AK058049|CCDC36|339834|coiled-coil domain containing 36##BC036202|CCDC36|339834|coiled-coil domain containing 36##NM_178173|CCDC36|339834|coiled-coil domain containing 36##AF017306|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AF017305|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##U20657|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK222725|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK223292|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##BC068017|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK291795|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)	1.052403	0.0	
chr10	93857822	93858002	reg1014264.p2	4.549	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-174220	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-174396	+	AK315427 BC025966 AK075410 NM_152429	-188692	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	145107	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	192924	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	193142	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	1.993282	0.0	
chr1	32446594	32446774	reg1003143.p1	4.549	+	TSC_hg19_v1_chr1_-_32403992 NM_080391	-42687	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	-42753	-	NM_001195100 NM_001195101	-61426	-	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	32814	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	91820	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	91890	+	NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B	0.0	0.0	
chr15	38546690	38546769	reg1011927.p1	4.549	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	-1707	+	TSC_hg19_v1_chr15_+_38544515 AK091222 AX746859 BC137480 BC137481	-2334	+	BC029221 NM_152453	-319273	+	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	199616	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	310202	-	AK093014 AX747856 BC119016 BC119810 NM_207444	442069	+	NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AK091222|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137480|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137481|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC029221|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_152453|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53	0.03186	0.0	
chr17	30842874	30843036	reg1010714.p1	4.549	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-28195	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-28358	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-28884	+	CU688936 AB385376 AB018270 BC146763 NM_015194	360940	-	TSC_hg19_v1_chr17_-_31204141 AK127942	361168	-	TSC_hg19_v1_chr17_-_31204196 BC030602	361258	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	0.0	0.0	
chr17	8114057	8114204	reg1008966.p2	4.549	+	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	-247	-	TSC_hg19_v1_chr17_-_8093499 NM_017622	-20603	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	-20726	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	37232	-	TSC_hg19_v1_chr17_-_8151373 NM_025099	37262	-	TSC_hg19_v1_chr17_+_8152624 AK292804 NM_012393 AK295895 AK292402 AB002359 BC146768 BC167158	38487	+	BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##NM_025099|CTC1|80169|CTS telomere maintenance complex component 1##AK292804|PFAS|5198|phosphoribosylformylglycinamidine synthase##NM_012393|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK295895|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK292402|PFAS|5198|phosphoribosylformylglycinamidine synthase##AB002359|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC146768|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC167158|PFAS|5198|phosphoribosylformylglycinamidine synthase	0.97527	0.0	denovo_WM_7:-10:0.939
chr19	8645991	8646171	reg1001072.p2	4.549	+	TSC_hg19_v1_chr19_-_8642338 AB290178	-3683	-	TSC_hg19_v1_chr19_-_8642317 AK301166 AK310058 AB210037 AK131106 NM_012335	-3759	-	TSC_hg19_v1_chr19_-_8642306 BC028071	-3780	-	TSC_hg19_v1_chr19_-_8675585 AB209515 NM_030957	29511	-	AY248901 AK292258 BC024028 TSC_hg19_v1_chr19_-_8809146 BC045752 NM_178525	163031	-	BC137046 BC151149 NM_001004699	195271	+	AB290178|MYO1F|4542|myosin IF##AK301166|MYO1F|4542|myosin IF##AB210037|MYO1F|4542|myosin IF##AK131106|MYO1F|4542|myosin IF##NM_012335|MYO1F|4542|myosin IF##BC028071|MYO1F|4542|myosin IF##AB209515|ADAMTS10|81794|ADAM metallopeptidase with thrombospondin type 1 motif, 10##NM_030957|ADAMTS10|81794|ADAM metallopeptidase with thrombospondin type 1 motif, 10##AY248901|ACTL9|284382|actin-like 9##AK292258|ACTL9|284382|actin-like 9##BC024028|ACTL9|284382|actin-like 9##BC045752|ACTL9|284382|actin-like 9##NM_178525|ACTL9|284382|actin-like 9##BC137046|OR2Z1|284383|olfactory receptor, family 2, subfamily Z, member 1##BC151149|OR2Z1|284383|olfactory receptor, family 2, subfamily Z, member 1##NM_001004699|OR2Z1|284383|olfactory receptor, family 2, subfamily Z, member 1	1.992682	0.0	denovo_WM_7:-43:0.508	denovo_WM_7:-44:0.483	denovo_WM_7:-58:0.428	denovo_WM_7:-59:0.559
chr6	74220590	74220747	reg1012500.p1	4.549	+	AL833823 TSC_hg19_v1_chr6_+_74171681	-49012	+	NM_001123226 NM_012123 NM_133645 TSC_hg19_v1_chr6_+_74171505 AK225828 AK074625 AF319422 AF469110 AF469111 AY078985 AY078986 BC005808 BC011051 AJ420530 AF132937	-49161	+	TSC_hg19_v1_chr6_-_74162038 NM_138441	-58610	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	8501	-	TSC_hg19_v1_chr6_-_74230163 AY043301	9502	-	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	10078	-	AL833823|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_001123226|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_012123|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_133645|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK225828|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK074625|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF319422|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469110|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469111|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078985|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078986|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC005808|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC011051|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AJ420530|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF132937|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_138441|MB21D1|115004|Mab-21 domain containing 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1	0.996841	0.0	denovo_WM_7:-39:0.975
chr8	128992961	128993088	reg1011462.p1	4.549	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-186241	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-244534	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-244699	+	AB042405 NM_031415	1806109	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1958891	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1958982	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.991762	0.0	
chr9	137750325	137750456	reg1004963.p2	4.549	+	TSC_hg19_v1_chr9_+_137533714 M76729 D90279	-216580	+	TSC_hg19_v1_chr9_+_137533652 AB371583 NM_000093	-216743	+	TSC_hg19_v1_chr9_+_137218326 BC110998 X52773 AB463220 EU446653 AB307705 HQ692843	-531990	+	AK290843 BC069572 BC069825 BC113935 D49353 NM_004108 NM_015837 AK308476 AB590757	22270	+	D83920 DQ891426 DQ894436 CR749452 BC020635 AK314867 NM_002003	59367	-	NM_014279 NM_006334 TSC_hg19_v1_chr9_+_137967133	216725	+	D90279|COL5A1|1289|collagen, type V, alpha 1##AB371583|COL5A1|1289|collagen, type V, alpha 1##NM_000093|COL5A1|1289|collagen, type V, alpha 1##BC110998|RXRA|6256|retinoid X receptor, alpha##X52773|RXRA|6256|retinoid X receptor, alpha##EU446653|RXRA|6256|retinoid X receptor, alpha##AB307705|RXRA|6256|retinoid X receptor, alpha##HQ692843|RXRA|6256|retinoid X receptor, alpha##AK290843|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##BC069572|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##BC069825|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##BC113935|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##D49353|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##NM_004108|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##NM_015837|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##AK308476|FCN2|2220|ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin)##D83920|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##DQ891426|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##DQ894436|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##CR749452|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##BC020635|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##AK314867|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##NM_002003|FCN1|2219|ficolin (collagen/fibrinogen domain containing) 1##NM_014279|OLFM1|10439|olfactomedin 1##NM_006334|OLFM1|10439|olfactomedin 1	0.0	0.148557	
chr21	34746862	34746988	reg1009009.p1	4.548	+	AK222770 AK222812 AK312631 TSC_hg19_v1_chr21_+_34697277 BC021825 J03171 BC002590 AB528746 CU692410 DQ891323 DQ894507	-49607	+	TSC_hg19_v1_chr21_+_34697236 NM_000629	-49707	+	TSC_hg19_v1_chr21_+_34638753 AK299961 AB590138 DQ892552 DQ895763 BT009777	-108171	+	TSC_hg19_v1_chr21_+_34775192 NM_005534 U05875	28271	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	28807	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	28823	+	AK222770|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK222812|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK312631|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC021825|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##J03171|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##BC002590|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ891323|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##DQ894507|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##NM_000629|IFNAR1|3454|interferon (alpha, beta and omega) receptor 1##AK299961|IL10RB|3588|interleukin 10 receptor, beta##DQ892552|IL10RB|3588|interleukin 10 receptor, beta##DQ895763|IL10RB|3588|interleukin 10 receptor, beta##BT009777|IL10RB|3588|interleukin 10 receptor, beta##NM_005534|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05875|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)	0.0	0.0	
chr22	36520109	36520242	reg1011724.p1	4.548	+	AY072786 DQ778625 TSC_hg19_v1_chr22_-_36424553 AK055213 NM_001082578 NM_001082579	-95636	-	TSC_hg19_v1_chr22_-_36236476 AF229058 AL009266 AK314632 BC013115 BC025281 AK291460 NM_001031695 NM_001082576 NM_001082577 NM_014309	-283650	-	CR456559 TSC_hg19_v1_chr22_-_36236341	-283835	-	BC042918 BC038352 AK025349 AF070675 BC070144 AF305227 BC050596 AY014902 AY014903 AY014904 AY014905 NM_145640	36703	-	AY014906 AY014907 NM_145641 NM_145642	42049	-	AK290466 BC006276 AK313637 AK311506 AY014914 AY014915 NM_030643 NM_145660	80643	-	AY072786|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##DQ778625|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK055213|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082578|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082579|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AF229058|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AL009266|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK314632|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC013115|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC025281|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK291460|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001031695|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082576|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082577|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_014309|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##CR456559|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC042918|APOL3|80833|apolipoprotein L, 3##BC038352|APOL3|80833|apolipoprotein L, 3##AK025349|APOL3|80833|apolipoprotein L, 3##AF070675|APOL3|80833|apolipoprotein L, 3##AF305227|APOL3|80833|apolipoprotein L, 3##BC050596|APOL3|80833|apolipoprotein L, 3##AY014902|APOL3|80833|apolipoprotein L, 3##AY014903|APOL3|80833|apolipoprotein L, 3##AY014904|APOL3|80833|apolipoprotein L, 3##AY014905|APOL3|80833|apolipoprotein L, 3##NM_145640|APOL3|80833|apolipoprotein L, 3##AY014906|APOL3|80833|apolipoprotein L, 3##AY014907|APOL3|80833|apolipoprotein L, 3##NM_145641|APOL3|80833|apolipoprotein L, 3##NM_145642|APOL3|80833|apolipoprotein L, 3##AK290466|APOL4|80832|apolipoprotein L, 4##BC006276|APOL4|80832|apolipoprotein L, 4##AK313637|APOL4|80832|apolipoprotein L, 4##AK311506|APOL4|80832|apolipoprotein L, 4##AY014914|APOL4|80832|apolipoprotein L, 4##AY014915|APOL4|80832|apolipoprotein L, 4##NM_030643|APOL4|80832|apolipoprotein L, 4##NM_145660|APOL4|80832|apolipoprotein L, 4	0.0	0.823009	CTCF.p2:44:0.823
chr4	57253575	57253722	reg1013189.p2	4.548	+	AF516672 AY422212 BC142709 TSC_hg19_v1_chr4_-_57253644 AF161436 AK303733 BC141824 AK294332 AY314787 BC015096 NM_181806 AK316296 AK304309 BX648853	-21	-	AK126014 NM_020722	-217288	+	AK023683 NM_025009 TSC_hg19_v1_chr4_+_56815093 BC136535 BC136536	-438557	+	AB590152 CU678610 DQ893484 DQ896410 TSC_hg19_v1_chr4_-_57301775 AK290942 BC004200 U00238 AK222759 D13757 AK312297 NM_002703	48108	-	TSC_hg19_v1_chr4_+_57301910 NM_006452 AK294821 BC010273	48271	+	NM_001079524 NM_001079525 TSC_hg19_v1_chr4_+_57302303 CR749824 BC019255	48657	+	AF516672|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY422212|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC142709|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AF161436|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK303733|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC141824|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK294332|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY314787|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC015096|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##NM_181806|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK316296|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK304309|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BX648853|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK126014|KIAA1211|57482|KIAA1211##NM_020722|KIAA1211|57482|KIAA1211##AK023683|CEP135|9662|centrosomal protein 135kDa##NM_025009|CEP135|9662|centrosomal protein 135kDa##BC136535|CEP135|9662|centrosomal protein 135kDa##BC136536|CEP135|9662|centrosomal protein 135kDa##DQ893484|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##DQ896410|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK290942|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##BC004200|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##U00238|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK222759|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##D13757|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK312297|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_002703|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_006452|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK294821|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC010273|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079524|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079525|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##CR749824|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC019255|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase	0.0	0.0	
chrY	1576595	1576770	reg1009895.p1	4.548	+	AK301844 NM_001173473	-54031	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-54881	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-115713	-	BC043610 GQ280263 NM_178129 AK126147	29356	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	83847	+	NM_004043 U11090	87665	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.0	0.0	
chr13	80921976	80922064	reg1001922.p1	4.547	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-6956	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-8978	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-866465	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3534405	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3534480	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5451419	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.0	0.0	
chr15	80312301	80312481	reg1002818.p3	4.547	+	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	-48840	-	TSC_hg19_v1_chr15_-_80216042 AF249277	-96353	-	NM_001100880 NM_001199757	-96728	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	39551	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	39638	+	TSC_hg19_v1_chr15_+_80352046 AL136598	39676	+	BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6##AL136598|ZFAND6|54469|zinc finger, AN1-type domain 6	1.993254	0.0	denovo_WM_7:44:0.958	denovo_WM_7:-87:0.298	denovo_WM_7:-88:0.298	denovo_WM_7:-89:0.298
chr3	183237691	183237871	reg1013145.p1	4.547	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-72351	+	NM_015078 BC064632 AK124500 AK310962	-91842	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-266175	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	35671	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	115619	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	177841	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	1.481536	0.0	denovo_WM_7:-74:0.476	denovo_WM_7:-89:0.540
chr6	131019152	131019282	reg1011680.p1	4.547	+	AB052099 NM_052913	-260956	+	AK091882 AX747235 NM_001017373	-475119	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	-482762	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	129345	+	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	272334	-	CR749262 CR936793 NM_001252660	302670	-	AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2	1.153504	1.022376	denovo_WM_7:-46:0.509	denovo_WM_7:-47:0.332	CTCF.p2:52:0.982
chr8	66742408	66742554	reg1007484.p2	4.547	+	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	-41230	-	NM_001145838 CU692168 BX537854 D13634	-160314	+	NM_001145839 NM_014637 TSC_hg19_v1_chr8_+_66556973 AK316202 BX647507 AK304716 BC036116 BC043498 AK298945	-185521	+	NM_001242318	11487	-	TSC_hg19_v1_chr8_-_66754300 AK292680	11811	-	NM_033105 BC016742 AF368276 AL133660	191338	+	HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_001145838|MTFR1|9650|mitochondrial fission regulator 1##BX537854|MTFR1|9650|mitochondrial fission regulator 1##D13634|MTFR1|9650|mitochondrial fission regulator 1##NM_001145839|MTFR1|9650|mitochondrial fission regulator 1##NM_014637|MTFR1|9650|mitochondrial fission regulator 1##AK316202|MTFR1|9650|mitochondrial fission regulator 1##BX647507|MTFR1|9650|mitochondrial fission regulator 1##AK304716|MTFR1|9650|mitochondrial fission regulator 1##BC036116|MTFR1|9650|mitochondrial fission regulator 1##BC043498|MTFR1|9650|mitochondrial fission regulator 1##AK298945|MTFR1|9650|mitochondrial fission regulator 1##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK292680|PDE7A|5150|phosphodiesterase 7A##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	0.988644	0.0	denovo_WM_7:-3:0.946
chr9	101998365	101998463	reg1010100.p1	4.547	+	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-13827	+	TSC_hg19_v1_chr9_-_101984233 NM_033087	-14171	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	-14197	-	TSC_hg19_v1_chr9_-_102582187 AK057451	583751	-	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	585743	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	670513	+	AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17	0.0	0.015924	
chr15	75423363	75423494	reg1012303.p2	4.546	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-107447	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-107500	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-135521	+	AK128205 TSC_hg19_v1_chr15_+_75491259	67818	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	70784	+	BC110367 TSC_hg19_v1_chr15_+_75494233	70805	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.0	0.0	
chr17	46918790	46918932	reg1012443.p2	4.546	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-10471	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-24437	-	CU689652 BC033563 NM_173623 AK310321	-47216	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	51324	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	66884	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	66973	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	0.0	0.0	
chr2	8820829	8820980	reg1008932.p1	4.546	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1763317	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1803041	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1814201	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1299	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	156815	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	322917	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.995052	0.0	denovo_WM_7:66:0.332	denovo_WM_7:67:0.332	denovo_WM_7:68:0.332
chr4	171605863	171605981	reg1010802.p1	4.546	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-594508	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-594724	-	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	-658417	-	NM_001034845 BC047551 BC144036 BC144037 BC063015	1128722	+	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	2484030	+	BC043556 TSC_hg19_v1_chr4_-_174090314	2484388	-	BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.992726	0.0	denovo_WM_7:57:0.756
chr8	86432752	86432883	reg1010286.p1	4.546	+	NM_000067 AF015039 TSC_hg19_v1_chr8_+_86376232 AK312978 BC011949 J03037 Y00339 M36532 DQ891320 DQ894504 AB591010 CU680124 CR536526 CR541875	-56597	+	AK096880 NM_005181 TSC_hg19_v1_chr8_+_86351055 AK300670 AK300677 AK313254 BC004897 CU678792	-81721	+	BC027890 NM_001128829 NM_001128830 NM_001128831 NM_001738	-142480	-	NM_172239	142908	-	NM_172239	356488	-	AY037806 HQ258398 NM_033126 BC126180 BC126182 BC144195	649070	-	NM_000067|CA2|760|carbonic anhydrase II##AF015039|CA2|760|carbonic anhydrase II##AK312978|CA2|760|carbonic anhydrase II##BC011949|CA2|760|carbonic anhydrase II##J03037|CA2|760|carbonic anhydrase II##Y00339|CA2|760|carbonic anhydrase II##M36532|CA2|760|carbonic anhydrase II##DQ891320|CA2|760|carbonic anhydrase II##DQ894504|CA2|760|carbonic anhydrase II##CR536526|CA2|760|carbonic anhydrase II##CR541875|CA2|760|carbonic anhydrase II##AK096880|CA3|761|carbonic anhydrase III, muscle specific##NM_005181|CA3|761|carbonic anhydrase III, muscle specific##AK300670|CA3|761|carbonic anhydrase III, muscle specific##AK300677|CA3|761|carbonic anhydrase III, muscle specific##AK313254|CA3|761|carbonic anhydrase III, muscle specific##BC004897|CA3|761|carbonic anhydrase III, muscle specific##BC027890|CA1|759|carbonic anhydrase I##NM_001128829|CA1|759|carbonic anhydrase I##NM_001128830|CA1|759|carbonic anhydrase I##NM_001128831|CA1|759|carbonic anhydrase I##NM_001738|CA1|759|carbonic anhydrase I##NM_172239|REXO1L1|254958|REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1##NM_172239|REXO1L1|254958|REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1##AY037806|PSKH2|85481|protein serine kinase H2##HQ258398|PSKH2|85481|protein serine kinase H2##NM_033126|PSKH2|85481|protein serine kinase H2##BC126180|PSKH2|85481|protein serine kinase H2##BC126182|PSKH2|85481|protein serine kinase H2##BC144195|PSKH2|85481|protein serine kinase H2	0.0	0.0	
chr17	28973135	28973268	reg1015227.p1	4.545	+	BC096718 BC098126 BC098273 NM_015594	-86618	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-168768	+	AK316409 NM_001199775 AK302878	-265686	+	TSC_hg19_v1_chr17_+_29058664 BC047718	85487	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	178474	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	178562	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	0.044545	0.0	
chr19	16696922	16697023	reg1007302.p2	4.545	+	TSC_hg19_v1_chr19_+_16683381 AK094229	-13575	+	TSC_hg19_v1_chr19_-_16683205 BC062562 NM_024881	-13776	-	TSC_hg19_v1_chr19_-_16653256 NM_006387	-43709	-	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	42028	-	TSC_hg19_v1_chr19_-_16770944 AK025602 BC069279 BX648276	73957	-	TSC_hg19_v1_chr19_-_16770956 NM_024104	73990	-	BC062562|SLC35E1|79939|solute carrier family 35, member E1##NM_024881|SLC35E1|79939|solute carrier family 35, member E1##NM_006387|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26##AK025602|C19orf42|79086|chromosome 19 open reading frame 42##BC069279|C19orf42|79086|chromosome 19 open reading frame 42##BX648276|C19orf42|79086|chromosome 19 open reading frame 42##NM_024104|C19orf42|79086|chromosome 19 open reading frame 42	0.0	0.0	
chr20	5803436	5803544	reg1012622.p1	4.545	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	-72424	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-211903	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-508454	-	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	88636	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	127633	-	AJ439063 NM_032485 NM_182802 AK297806 BC101054 BC101055 BC101056 BC101057 BC080656 AY158211 BC005170 AK314654	127993	+	AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AJ439063|MCM8|84515|minichromosome maintenance complex component 8##NM_032485|MCM8|84515|minichromosome maintenance complex component 8##NM_182802|MCM8|84515|minichromosome maintenance complex component 8##AK297806|MCM8|84515|minichromosome maintenance complex component 8##BC101054|MCM8|84515|minichromosome maintenance complex component 8##BC101055|MCM8|84515|minichromosome maintenance complex component 8##BC101056|MCM8|84515|minichromosome maintenance complex component 8##BC101057|MCM8|84515|minichromosome maintenance complex component 8##BC080656|MCM8|84515|minichromosome maintenance complex component 8##AY158211|MCM8|84515|minichromosome maintenance complex component 8##BC005170|MCM8|84515|minichromosome maintenance complex component 8##AK314654|MCM8|84515|minichromosome maintenance complex component 8	0.190757	0.0	
chr2	42826797	42826977	reg1011666.p1	4.545	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-30990	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-31166	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-105185	+	AY158687 AB528920 AB083055 BC063549 NM_148962	164413	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	192864	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	626458	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.0	0.0	
chr10	4850090	4850210	reg1009286.p1	4.544	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-1022641	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-1022839	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-1635145	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	18268	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	155364	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	155473	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	1.826864	0.0	denovo_WM_7:-37:0.814	denovo_WM_7:-53:0.266	denovo_WM_7:-58:0.277
chr16	11987830	11987992	reg1009071.p1	4.544	+	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	-42507	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	-96796	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	-96860	-	TSC_hg19_v1_chr16_-_12009569 AB590486	21692	-	BC009503 TSC_hg19_v1_chr16_-_12009763 AK095483	21837	-	TSC_hg19_v1_chr16_-_12009775 BC008391	21864	-	AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC009503|GSPT1|2935|G1 to S phase transition 1##AK095483|GSPT1|2935|G1 to S phase transition 1##BC008391|GSPT1|2935|G1 to S phase transition 1	0.665559	0.0	denovo_WM_7:-54:0.666
chr18	56201305	56201433	reg1013144.p2	4.544	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-312519	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-312566	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-312607	+	BX647796 NM_052947	94819	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	137272	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	137359	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.999148	0.0	denovo_WM_7:21:0.739
chr19	58144262	58144436	reg1012222.p1	4.544	+	BC112294 BC113410 NM_003435	-18522	+	TSC_hg19_v1_chr19_+_58125633 U09412 BC021280	-18710	+	TSC_hg19_v1_chr19_+_58125609 AK291763 BC053511 BC042636 BC011646	-18729	+	TSC_hg19_v1_chr19_+_58144535 NM_006385 NM_198855 AK294869 BC018138 AK296942 AK297047 AK304666 BC110856 BC034351 AK026941	216	+	U38904 TSC_hg19_v1_chr19_+_58152388	8010	+	AK092424 AX747538 NM_152677	35953	+	BC112294|ZNF134|7693|zinc finger protein 134##BC113410|ZNF134|7693|zinc finger protein 134##NM_003435|ZNF134|7693|zinc finger protein 134##U09412|ZNF134|7693|zinc finger protein 134##BC021280|ZNF134|7693|zinc finger protein 134##AK291763|ZNF134|7693|zinc finger protein 134##BC042636|ZNF134|7693|zinc finger protein 134##BC011646|ZNF134|7693|zinc finger protein 134##NM_006385|ZNF211|10520|zinc finger protein 211##NM_198855|ZNF211|10520|zinc finger protein 211##AK294869|ZNF211|10520|zinc finger protein 211##BC018138|ZNF211|10520|zinc finger protein 211##AK296942|ZNF211|10520|zinc finger protein 211##AK297047|ZNF211|10520|zinc finger protein 211##AK304666|ZNF211|10520|zinc finger protein 211##BC110856|ZNF211|10520|zinc finger protein 211##BC034351|ZNF211|10520|zinc finger protein 211##AK026941|ZNF211|10520|zinc finger protein 211##U38904|ZNF211|10520|zinc finger protein 211##AK092424|ZSCAN4|201516|zinc finger and SCAN domain containing 4##NM_152677|ZSCAN4|201516|zinc finger and SCAN domain containing 4	0.0	0.0	
chr19	8262320	8262432	reg1013336.p3	4.544	+	AB384635 AB053450 BC153882 NM_032447	-50001	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-144429	+	AK292662 NM_001201359 NM_005624	-144731	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	11872	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	110833	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	123881	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.991629	0.0	denovo_WM_7:-39:0.331	denovo_WM_7:-40:0.331	denovo_WM_7:-41:0.331
chr10	17243601	17243781	reg1009625.p1	4.543	+	AF034611 NM_001081 TSC_hg19_v1_chr10_-_17171878	-71858	-	TSC_hg19_v1_chr10_-_16859451 BC015644 BC005993 BC107898 BX647733 NM_012425 NM_152724	-384256	-	TSC_hg19_v1_chr10_-_16859397 AK225681 AK312520	-384297	-	TSC_hg19_v1_chr10_-_17243660 CR450316 AF045888 AK291417 AF012128 BC047733 AK303428 BX537961 AJ223333 AK299027	42	-	NM_004412	378	-	NM_003380	26566	+	AF034611|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_001081|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##BC015644|RSU1|6251|Ras suppressor protein 1##BC005993|RSU1|6251|Ras suppressor protein 1##BC107898|RSU1|6251|Ras suppressor protein 1##BX647733|RSU1|6251|Ras suppressor protein 1##NM_012425|RSU1|6251|Ras suppressor protein 1##NM_152724|RSU1|6251|Ras suppressor protein 1##AK225681|RSU1|6251|Ras suppressor protein 1##AK312520|RSU1|6251|Ras suppressor protein 1##CR450316|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF045888|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK291417|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF012128|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BC047733|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK303428|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BX537961|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AJ223333|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK299027|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##NM_004412|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##NM_003380|VIM|7431|vimentin	0.0	0.0	
chr16	8757090	8757205	reg1005580.p1	4.543	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	-41607	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	-1374397	+	AK001027 NM_001142334	-1933338	+	TSC_hg19_v1_chr16_+_8768473 NM_020686 BX537362 AK096146 BC031413 BC015628	11315	+	NM_000663 TSC_hg19_v1_chr16_+_8806841 BC013965	49688	+	TSC_hg19_v1_chr16_+_8807190 AK054834	50055	+	NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22##AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_020686|ABAT|18|4-aminobutyrate aminotransferase##BX537362|ABAT|18|4-aminobutyrate aminotransferase##AK096146|ABAT|18|4-aminobutyrate aminotransferase##BC031413|ABAT|18|4-aminobutyrate aminotransferase##BC015628|ABAT|18|4-aminobutyrate aminotransferase##NM_000663|ABAT|18|4-aminobutyrate aminotransferase##BC013965|ABAT|18|4-aminobutyrate aminotransferase##AK054834|ABAT|18|4-aminobutyrate aminotransferase	0.998167	0.0	
chr19	11059598	11059769	reg1015060.p2	4.543	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-20226	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-20444	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-77247	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	11963	+	TSC_hg19_v1_chr19_+_11071717 BC007302	12032	+	TSC_hg19_v1_chr19_+_11071720 BC035916	12067	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.0	0.0	
chr5	96196648	96196746	reg1008954.p1	4.543	+	AK310535 BC030775 NM_001198541	-46872	-	TSC_hg19_v1_chr5_-_96143701 NM_001040458 NM_016442	-52907	-	TSC_hg19_v1_chr5_-_96143614 AF106037 AF183569 AF222340 AY358590 AK291636 AY028806 AY028807	-53075	-	NM_001130140 NM_022350 AK074281	14969	+	TSC_hg19_v1_chr5_+_96212203 AK312864 AB109031 AB163917 BC065240	15491	+	TSC_hg19_v1_chr5_+_96271097 AK096804	74396	+	AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001040458|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_016442|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF106037|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF183569|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF222340|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY358590|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK291636|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028806|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028807|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001130140|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_022350|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK074281|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK096804|LNPEP|4012|leucyl/cystinyl aminopeptidase	0.992942	0.0	denovo_WM_7:-23:0.378	denovo_WM_7:-24:0.441
chr6	160067693	160067873	reg1009908.p1	4.543	+	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	-477353	+	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	-601682	-	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-646562	-	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	46467	-	TSC_hg19_v1_chr6_-_160114357 NM_000636 NM_001024465 NM_001024466	46579	-	TSC_hg19_v1_chr6_+_160148149 AK290854 AF374416 NM_004906 NM_152858 BC000383 BC004432 BC069192	80389	+	DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_000636|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024465|SOD2|6648|superoxide dismutase 2, mitochondrial##NM_001024466|SOD2|6648|superoxide dismutase 2, mitochondrial##AK290854|WTAP|9589|Wilms tumor 1 associated protein##AF374416|WTAP|9589|Wilms tumor 1 associated protein##NM_004906|WTAP|9589|Wilms tumor 1 associated protein##NM_152858|WTAP|9589|Wilms tumor 1 associated protein##BC000383|WTAP|9589|Wilms tumor 1 associated protein##BC004432|WTAP|9589|Wilms tumor 1 associated protein##BC069192|WTAP|9589|Wilms tumor 1 associated protein	0.999811	0.0	denovo_WM_7:-10:0.457	denovo_WM_7:-11:0.457
chr20	46044151	46044331	reg1008922.p2	4.542	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-58753	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-67594	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-116672	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	86381	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	86443	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	370511	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.0	0.0	
chr2	228276228	228276325	reg1005997.p1	4.542	+	AY358671 BC137256 BC137257 BC035754 TSC_hg19_v1_chr2_-_228244023 AK026453 NM_024795	-32262	-	AF246239 NM_020194	-84049	+	TSC_hg19_v1_chr2_+_228189983 AK026137 BC093024 AF258660	-86232	+	TSC_hg19_v1_chr2_+_228336861 AK097451	60566	+	TSC_hg19_v1_chr2_+_228336877 NM_001135187 NM_001135188 NM_001135189 NM_004504 BC030592 X89478 BC096272 BC096273 BC096274 BC096275 AB527534 CU688928	60730	+	TSC_hg19_v1_chr2_+_228356287 AK295030	80015	+	AY358671|TM4SF20|79853|transmembrane 4 L six family member 20##BC137256|TM4SF20|79853|transmembrane 4 L six family member 20##BC137257|TM4SF20|79853|transmembrane 4 L six family member 20##BC035754|TM4SF20|79853|transmembrane 4 L six family member 20##AK026453|TM4SF20|79853|transmembrane 4 L six family member 20##NM_024795|TM4SF20|79853|transmembrane 4 L six family member 20##AF246239|MFF|56947|mitochondrial fission factor##NM_020194|MFF|56947|mitochondrial fission factor##AK026137|MFF|56947|mitochondrial fission factor##BC093024|MFF|56947|mitochondrial fission factor##AF258660|MFF|56947|mitochondrial fission factor##AK097451|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135187|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135188|AGFG1|3267|ArfGAP with FG repeats 1##NM_001135189|AGFG1|3267|ArfGAP with FG repeats 1##NM_004504|AGFG1|3267|ArfGAP with FG repeats 1##BC030592|AGFG1|3267|ArfGAP with FG repeats 1##X89478|AGFG1|3267|ArfGAP with FG repeats 1##BC096272|AGFG1|3267|ArfGAP with FG repeats 1##BC096273|AGFG1|3267|ArfGAP with FG repeats 1##BC096274|AGFG1|3267|ArfGAP with FG repeats 1##BC096275|AGFG1|3267|ArfGAP with FG repeats 1##AK295030|AGFG1|3267|ArfGAP with FG repeats 1	0.0	0.0	
chr8	81987000	81987130	reg1010229.p1	4.542	+	AK131274 NM_001033723	-200050	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-588581	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-903295	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	37249	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	205708	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	372604	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.0	0.0	
chrX	58514794	58514899	reg1011966.p2	4.542	+	EU446736 TSC_hg19_v1_chrX_-_57936884 BC059356 AK292686 AK122815 NM_007156	-577887	-	TSC_hg19_v1_chrX_+_57618452 AK289766 AB384714	-896386	+	NM_007157	-896578	+	BC112360 TSC_hg19_v1_chrX_-_62571212 AK126931 AL833314 NM_001012968	4056353	-	TSC_hg19_v1_chrX_-_62648209 BC048208 AK129670	4133421	-	TSC_hg19_v1_chrX_-_62780938 AK001756 AL080202	4266021	-	EU446736|ZXDA|7789|zinc finger, X-linked, duplicated A##BC059356|ZXDA|7789|zinc finger, X-linked, duplicated A##AK292686|ZXDA|7789|zinc finger, X-linked, duplicated A##AK122815|ZXDA|7789|zinc finger, X-linked, duplicated A##NM_007156|ZXDA|7789|zinc finger, X-linked, duplicated A##AK289766|ZXDB|158586|zinc finger, X-linked, duplicated B##NM_007157|ZXDB|158586|zinc finger, X-linked, duplicated B##BC112360|SPIN4|139886|spindlin family, member 4##AK126931|SPIN4|139886|spindlin family, member 4##AL833314|SPIN4|139886|spindlin family, member 4##NM_001012968|SPIN4|139886|spindlin family, member 4##BC048208|LOC92249|92249|uncharacterized LOC92249##AK129670|LOC92249|92249|uncharacterized LOC92249##AK001756|LOC92249|92249|uncharacterized LOC92249##AL080202|LOC92249|92249|uncharacterized LOC92249	0.0	0.0	
chr12	50038494	50038594	reg1012196.p1	4.541	+	BC067364 NM_001031698	-14218	+	TSC_hg19_v1_chr12_+_50017344 AK123353 BC050398 AL834216 NM_012272	-21173	+	AM393365 AL136748 BC035621 AK302702 AK093242 AX748009 NM_032130	-39199	-	AB384661 TSC_hg19_v1_chr12_-_50101046	62466	-	TSC_hg19_v1_chr12_-_50101189 AK128195	62614	-	TSC_hg19_v1_chr12_-_50101206 AB095934 BC159100 NM_175736 NM_198900	62668	-	BC067364|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##NM_001031698|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##AK123353|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##BC050398|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##AL834216|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##NM_012272|PRPF40B|25766|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)##AM393365|FAM186B|84070|family with sequence similarity 186, member B##AL136748|FAM186B|84070|family with sequence similarity 186, member B##BC035621|FAM186B|84070|family with sequence similarity 186, member B##AK302702|FAM186B|84070|family with sequence similarity 186, member B##AK093242|FAM186B|84070|family with sequence similarity 186, member B##NM_032130|FAM186B|84070|family with sequence similarity 186, member B##AK128195|FMNL3|91010|formin-like 3##AB095934|FMNL3|91010|formin-like 3##BC159100|FMNL3|91010|formin-like 3##NM_175736|FMNL3|91010|formin-like 3##NM_198900|FMNL3|91010|formin-like 3	0.0	0.998581	CTCF.p2:-35:0.999
chr1	91452568	91452748	reg1012373.p1	4.541	+	BC126439 BC126441 AY338397 NM_020063	-269873	-	TSC_hg19_v1_chr1_+_90460726 NM_182975 NM_182976 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073	-991942	+	BC009486 TSC_hg19_v1_chr1_+_90287584	-1165094	+	BC050656 TSC_hg19_v1_chr1_-_91487020 AK024026 NM_016620	34380	-	TSC_hg19_v1_chr1_-_91487583 BC041138 AK291520	34905	-	TSC_hg19_v1_chr1_-_91487586 BC092462	34931	-	BC126439|BARHL2|343472|BarH-like homeobox 2##BC126441|BARHL2|343472|BarH-like homeobox 2##AY338397|BARHL2|343472|BarH-like homeobox 2##NM_020063|BARHL2|343472|BarH-like homeobox 2##NM_182975|ZNF326|284695|zinc finger protein 326##NM_182976|ZNF326|284695|zinc finger protein 326##BC052645|ZNF326|284695|zinc finger protein 326##BC061521|ZNF326|284695|zinc finger protein 326##BC038454|ZNF326|284695|zinc finger protein 326##BC090866|ZNF326|284695|zinc finger protein 326##AK000410|ZNF326|284695|zinc finger protein 326##BC053888|ZNF326|284695|zinc finger protein 326##BC014899|ZNF326|284695|zinc finger protein 326##BC070341|ZNF326|284695|zinc finger protein 326##BC013102|ZNF326|284695|zinc finger protein 326##AK303707|ZNF326|284695|zinc finger protein 326##AK297073|ZNF326|284695|zinc finger protein 326##BC009486|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC050656|ZNF644|84146|zinc finger protein 644##AK024026|ZNF644|84146|zinc finger protein 644##NM_016620|ZNF644|84146|zinc finger protein 644##BC041138|ZNF644|84146|zinc finger protein 644##AK291520|ZNF644|84146|zinc finger protein 644##BC092462|ZNF644|84146|zinc finger protein 644	0.996939	0.0	denovo_WM_7:-30:0.928
chr19	47760643	47760771	reg1010215.p1	4.541	+	TSC_hg19_v1_chr19_+_47759811 BC002787 BC009743	-889	+	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	-946	+	AB590880 AK298837 AF354654 AF354655 AF354656 NM_001127240 NM_001127241 NM_001127242	-24767	-	TSC_hg19_v1_chr19_+_47778141 BC022076 BC045749 NM_178511 BC064510	17429	+	BC008982 NM_001736 TSC_hg19_v1_chr19_+_47813117 M62505	52395	+	AB038237 NM_018485	79663	+	BC002787|CCDC9|26093|coiled-coil domain containing 9##BC009743|CCDC9|26093|coiled-coil domain containing 9##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9##AK298837|BBC3|27113|BCL2 binding component 3##AF354654|BBC3|27113|BCL2 binding component 3##AF354655|BBC3|27113|BCL2 binding component 3##AF354656|BBC3|27113|BCL2 binding component 3##NM_001127240|BBC3|27113|BCL2 binding component 3##NM_001127241|BBC3|27113|BCL2 binding component 3##NM_001127242|BBC3|27113|BCL2 binding component 3##BC022076|PRR24|255783|proline rich 24##BC045749|PRR24|255783|proline rich 24##NM_178511|PRR24|255783|proline rich 24##BC064510|PRR24|255783|proline rich 24##BC008982|C5AR1|728|complement component 5a receptor 1##NM_001736|C5AR1|728|complement component 5a receptor 1##M62505|C5AR1|728|complement component 5a receptor 1##AB038237|GPR77|27202|G protein-coupled receptor 77##NM_018485|GPR77|27202|G protein-coupled receptor 77	0.0	0.0	
chr19	6517587	6517690	reg1008351.p3	4.541	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-15321	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-35855	-	NM_139161 NM_174881 AK292956 AF503290 AY358684 BC018409 AK000653	-53354	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	13388	+	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	73394	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	73468	-	EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##NM_139161|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_174881|CRB3|92359|crumbs homolog 3 (Drosophila)##AK292956|CRB3|92359|crumbs homolog 3 (Drosophila)##AF503290|CRB3|92359|crumbs homolog 3 (Drosophila)##AY358684|CRB3|92359|crumbs homolog 3 (Drosophila)##BC018409|CRB3|92359|crumbs homolog 3 (Drosophila)##AK000653|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule	0.997239	0.0	denovo_WM_7:-9:0.841
chr2	157340429	157340556	reg1011008.p1	4.541	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-47538	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-47626	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-48258	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	773801	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	841792	-	NM_001009959 AK296477	843664	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	1.021831	0.0	
chr3	116736386	116736498	reg1005384.p2	4.541	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-572069	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-572111	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-1394023	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2017091	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	2017241	-	AK097667 NM_152538 AK292387	2128455	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	0.849758	0.0	denovo_WM_7:-50:0.645
chr4	12726299	12726434	reg1010371.p3	4.541	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-1295834	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-2039965	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-2267356	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	759585	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	759609	-	AB463932 AF009801 EU446467 BC111966 NM_001189	819709	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	0.015506	0.57303	CTCF.p2:-26:0.573
chr5	118654059	118654232	reg1011332.p2	4.541	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-49628	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-49687	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-246980	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	37473	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	37593	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	134051	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.97722	0.0	denovo_WM_7:13:0.807
chrX	1398588	1398705	reg1012237.p1	4.541	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-10932	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	-67062	-	NM_000451 NM_006883 U89331	-813568	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	2937	+	BC035407 NM_002183	56862	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	112323	-	NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	0.991417	0.0	denovo_WM_7:32:0.253	denovo_WM_7:33:0.720
chr16	71600412	71600513	reg1000606.p5	4.540	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-40369	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-77247	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-104274	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	10510	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	59635	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	148238	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	0.996117	0.0	
chr20	32062906	32062998	reg1012840.p2	4.540	+	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	-31391	-	TSC_hg19_v1_chr20_-_31989330 NM_016082 NM_016408	-73613	-	BC001215 TSC_hg19_v1_chr20_-_31989326 AF152097 BC050706 AK027449 AF161516 AK023992 AK222745 AK292075 AK295342 AK309906 AK314532 AY462283 AY462284	-73638	-	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	14884	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	15019	+	BC015066 NM_001039709 NM_005093 AF069747 AF052212	87225	+	DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_016082|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016408|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC001215|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF152097|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC050706|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK027449|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF161516|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK023992|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK222745|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK292075|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK295342|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK309906|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK314532|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462283|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462284|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2	0.998504	0.0	denovo_WM_7:-10:0.449	denovo_WM_7:-11:0.449
chr3	10306711	10306800	reg1010038.p2	4.540	+	TSC_hg19_v1_chr3_+_10290370 AK289794 BC090935 BC101776 BC101770	-16233	+	TSC_hg19_v1_chr3_+_10290210 D86972	-16493	+	TSC_hg19_v1_chr3_+_10290182 NM_014760	-16580	+	BC025791 AJ252278 NM_001134941 NM_016362 AY359053 EF549567	25721	-	EF549557 EF549571 EF549572 EF549573 EF549574 EF549575 EU072083 EU072084 EU072085 EU072086 EU072087 EF549564 EF549566 EF549561 NM_001134944 NM_001134945 NM_001134946	27860	-	AF052155 NM_001136232 TSC_hg19_v1_chr3_-_10362765 L09260 BC002634 AK223019 EF036494	55992	-	AK289794|TATDN2|9797|TatD DNase domain containing 2##BC090935|TATDN2|9797|TatD DNase domain containing 2##BC101776|TATDN2|9797|TatD DNase domain containing 2##BC101770|TATDN2|9797|TatD DNase domain containing 2##D86972|TATDN2|9797|TatD DNase domain containing 2##NM_014760|TATDN2|9797|TatD DNase domain containing 2##BC025791|GHRL|51738|ghrelin/obestatin prepropeptide##AJ252278|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134941|GHRL|51738|ghrelin/obestatin prepropeptide##NM_016362|GHRL|51738|ghrelin/obestatin prepropeptide##AY359053|GHRL|51738|ghrelin/obestatin prepropeptide##EF549567|GHRL|51738|ghrelin/obestatin prepropeptide##EF549557|GHRL|51738|ghrelin/obestatin prepropeptide##EF549571|GHRL|51738|ghrelin/obestatin prepropeptide##EF549572|GHRL|51738|ghrelin/obestatin prepropeptide##EF549573|GHRL|51738|ghrelin/obestatin prepropeptide##EF549574|GHRL|51738|ghrelin/obestatin prepropeptide##EF549575|GHRL|51738|ghrelin/obestatin prepropeptide##EU072083|GHRL|51738|ghrelin/obestatin prepropeptide##EU072084|GHRL|51738|ghrelin/obestatin prepropeptide##EU072085|GHRL|51738|ghrelin/obestatin prepropeptide##EU072086|GHRL|51738|ghrelin/obestatin prepropeptide##EU072087|GHRL|51738|ghrelin/obestatin prepropeptide##EF549564|GHRL|51738|ghrelin/obestatin prepropeptide##EF549566|GHRL|51738|ghrelin/obestatin prepropeptide##EF549561|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134944|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134945|GHRL|51738|ghrelin/obestatin prepropeptide##NM_001134946|GHRL|51738|ghrelin/obestatin prepropeptide##AF052155|SEC13|6396|SEC13 homolog (S. cerevisiae)##NM_001136232|SEC13|6396|SEC13 homolog (S. cerevisiae)##L09260|SEC13|6396|SEC13 homolog (S. cerevisiae)##BC002634|SEC13|6396|SEC13 homolog (S. cerevisiae)##AK223019|SEC13|6396|SEC13 homolog (S. cerevisiae)##EF036494|SEC13|6396|SEC13 homolog (S. cerevisiae)	3.923269	0.0	denovo_WM_7:7:0.441	denovo_WM_7:8:0.441	denovo_WM_7:-18:0.845	denovo_WM_7:-43:0.244	denovo_WM_7:-44:0.627	denovo_WM_7:-63:0.825
chr10	101537003	101537114	reg1010096.p1	4.539	+	BX537557 NM_004376 NM_078470	-44636	-	TSC_hg19_v1_chr10_+_101491990 BC028948 BC011016 AF132966 AK302507 AK314687 AK001142 BC015059 BC021105	-45025	+	TSC_hg19_v1_chr10_+_101491984 NM_015960	-45091	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	5437	+	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	5505	+	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	153645	-	BX537557|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_004376|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_078470|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC028948|CUTC|51076|cutC copper transporter homolog (E. coli)##BC011016|CUTC|51076|cutC copper transporter homolog (E. coli)##AF132966|CUTC|51076|cutC copper transporter homolog (E. coli)##AK302507|CUTC|51076|cutC copper transporter homolog (E. coli)##AK314687|CUTC|51076|cutC copper transporter homolog (E. coli)##AK001142|CUTC|51076|cutC copper transporter homolog (E. coli)##BC015059|CUTC|51076|cutC copper transporter homolog (E. coli)##BC021105|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_015960|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##AK128576|DNMBP|23268|dynamin binding protein	0.71067	0.0	denovo_WM_7:63:0.695
chr17	48248431	48248540	reg1012044.p1	4.539	+	AK300710 TSC_hg19_v1_chr17_+_48243372 L34355 L35853 L46810 NM_000023 NM_001135697 AK293614 AK290622 BC025702 U08895 AB464188 DQ893777 CU693018	-5103	+	AJ401189 NM_032595 TSC_hg19_v1_chr17_-_48227977	-20559	-	TSC_hg19_v1_chr17_-_48207145 BC142728 BC136485 AY148482 NM_174920 AK291482 AK094209 AK225767 BC141822	-41336	-	TSC_hg19_v1_chr17_+_48262817 CU691369	14354	+	J00113 TSC_hg19_v1_chr17_-_48262921 M32790 M32798	14434	-	TSC_hg19_v1_chr17_-_48264068 X06269 S64596	15676	-	AK300710|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##L34355|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##L35853|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##L46810|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##NM_000023|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##NM_001135697|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##AK290622|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##BC025702|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##U08895|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##DQ893777|SGCA|6442|sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)##AJ401189|PPP1R9B|84687|protein phosphatase 1, regulatory subunit 9B##NM_032595|PPP1R9B|84687|protein phosphatase 1, regulatory subunit 9B##BC142728|SAMD14|201191|sterile alpha motif domain containing 14##BC136485|SAMD14|201191|sterile alpha motif domain containing 14##AY148482|SAMD14|201191|sterile alpha motif domain containing 14##NM_174920|SAMD14|201191|sterile alpha motif domain containing 14##AK291482|SAMD14|201191|sterile alpha motif domain containing 14##AK094209|SAMD14|201191|sterile alpha motif domain containing 14##AK225767|SAMD14|201191|sterile alpha motif domain containing 14##BC141822|SAMD14|201191|sterile alpha motif domain containing 14##J00113|COL1A1|1277|collagen, type I, alpha 1##M32798|COL1A1|1277|collagen, type I, alpha 1##X06269|COL1A1|1277|collagen, type I, alpha 1##S64596|COL1A1|1277|collagen, type I, alpha 1	0.0	0.0	
chr17	76772750	76772879	reg1010477.p2	4.539	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-39816	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-53063	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-53167	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	5539	-	BC071582 TSC_hg19_v1_chr17_-_76836610	63836	-	TSC_hg19_v1_chr17_-_76836843 AK225426	63969	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	2.478311	0.0	denovo_WM_7:8:0.280	denovo_WM_7:87:0.742
chr18	51673829	51673973	reg1009763.p2	4.539	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	-1806788	+	NM_005215 TSC_hg19_v1_chr18_+_49866541	-1807360	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-2949861	-	TSC_hg19_v1_chr18_-_51690988 AL110266	17091	-	AF072246 TSC_hg19_v1_chr18_-_51750614	76636	-	TSC_hg19_v1_chr18_-_51750997 BC032638	77064	-	M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##NM_005215|DCC|1630|deleted in colorectal carcinoma##NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AL110266|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2	1.962386	0.0	denovo_WM_7:-49:0.986	denovo_WM_7:-88:0.484	denovo_WM_7:-89:0.460
chr22	41842804	41842971	reg1010467.p1	4.539	+	TSC_hg19_v1_chr22_-_41842785 BC028919 AB051450 BC038957	-105	-	TSC_hg19_v1_chr22_-_41842432 CR456594	-432	-	TSC_hg19_v1_chr22_+_41777945 BC042476 NM_003216 BC039258 U44059 AK314906 AK295595 HM370396 CR456592 CU013192 CU013480 DQ890611 DQ893781 CR541827 CU691698 U06935	-64859	+	TSC_hg19_v1_chr22_-_41842881 NM_016272	52	-	AB489147 CU012956 CU013244 EU446678 TSC_hg19_v1_chr22_-_41864681 BC075808 CR456398 BC007321 NM_032758	21797	-	TSC_hg19_v1_chr22_+_41865120 AK293562 AK297213 AK301321 AK314845 AK302691 AK296260 BC026196 BC014092 NM_001098 U80040 CR456365 AB385022 CR536568 CU012932 CU013220 DQ893674 DQ895836	22244	+	BC028919|TOB2|10766|transducer of ERBB2, 2##AB051450|TOB2|10766|transducer of ERBB2, 2##BC038957|TOB2|10766|transducer of ERBB2, 2##CR456594|TOB2|10766|transducer of ERBB2, 2##BC042476|TEF|7008|thyrotrophic embryonic factor##NM_003216|TEF|7008|thyrotrophic embryonic factor##BC039258|TEF|7008|thyrotrophic embryonic factor##U44059|TEF|7008|thyrotrophic embryonic factor##AK314906|TEF|7008|thyrotrophic embryonic factor##AK295595|TEF|7008|thyrotrophic embryonic factor##HM370396|TEF|7008|thyrotrophic embryonic factor##CR456592|TEF|7008|thyrotrophic embryonic factor##CU013192|TEF|7008|thyrotrophic embryonic factor##CU013480|TEF|7008|thyrotrophic embryonic factor##DQ890611|TEF|7008|thyrotrophic embryonic factor##DQ893781|TEF|7008|thyrotrophic embryonic factor##CR541827|TEF|7008|thyrotrophic embryonic factor##U06935|TEF|7008|thyrotrophic embryonic factor##NM_016272|TOB2|10766|transducer of ERBB2, 2##CU012956|PHF5A|84844|PHD finger protein 5A##CU013244|PHF5A|84844|PHD finger protein 5A##EU446678|PHF5A|84844|PHD finger protein 5A##BC075808|PHF5A|84844|PHD finger protein 5A##CR456398|PHF5A|84844|PHD finger protein 5A##BC007321|PHF5A|84844|PHD finger protein 5A##NM_032758|PHF5A|84844|PHD finger protein 5A##AK293562|ACO2|50|aconitase 2, mitochondrial##AK297213|ACO2|50|aconitase 2, mitochondrial##AK301321|ACO2|50|aconitase 2, mitochondrial##AK314845|ACO2|50|aconitase 2, mitochondrial##AK302691|ACO2|50|aconitase 2, mitochondrial##AK296260|ACO2|50|aconitase 2, mitochondrial##BC026196|ACO2|50|aconitase 2, mitochondrial##BC014092|ACO2|50|aconitase 2, mitochondrial##NM_001098|ACO2|50|aconitase 2, mitochondrial##U80040|ACO2|50|aconitase 2, mitochondrial##CR456365|ACO2|50|aconitase 2, mitochondrial##CR536568|ACO2|50|aconitase 2, mitochondrial##CU012932|ACO2|50|aconitase 2, mitochondrial##CU013220|ACO2|50|aconitase 2, mitochondrial##DQ893674|ACO2|50|aconitase 2, mitochondrial##DQ895836|ACO2|50|aconitase 2, mitochondrial	0.0	0.0	
chr3	66428141	66428207	reg1016042.p2	4.539	+	NM_001164796	-157007	+	AK092495 AX747571 NM_173471	-308890	+	BC062367 NM_001033057 NM_004742 NM_015520 TSC_hg19_v1_chr3_-_66024518	-403661	-	TSC_hg19_v1_chr3_+_66444897 AB075504	16785	+	AF381545 BC140907 NM_015541 AY730707	122678	-	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	123290	-	NM_001164796|SLC25A26|115286|solute carrier family 25, member 26##AK092495|SLC25A26|115286|solute carrier family 25, member 26##AX747571|SLC25A26|115286|solute carrier family 25, member 26##NM_173471|SLC25A26|115286|solute carrier family 25, member 26##BC062367|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_001033057|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_004742|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_015520|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1	0.0	0.0	
chr5	35853770	35853886	reg1010025.p1	4.539	+	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	-235819	+	NM_000949	-623006	-	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	-623251	-	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	3205	+	NM_001042625 BC017586 NM_144647	84980	-	CU686633 BC068446 AK308046 AK290809 AK057066 AK303770 AK315851 AK296136 NM_152404	137610	-	BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##NM_000949|PRLR|5618|prolactin receptor##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like##BC068446|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK308046|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK290809|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK057066|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK303770|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK315851|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##AK296136|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1##NM_152404|UGT3A1|133688|UDP glycosyltransferase 3 family, polypeptide A1	1.043222	0.0	
chr6	42419657	42419818	reg1003587.p1	4.539	+	TSC_hg19_v1_chr6_-_42185603 NM_018141	-234120	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-234137	-	TSC_hg19_v1_chr6_-_42185597 AK316599 BC012560	-234140	-	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	86	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	112013	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	112040	+	NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##AK316599|MRPS10|55173|mitochondrial ribosomal protein S10##BC012560|MRPS10|55173|mitochondrial ribosomal protein S10##AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.0	0.0	
chr16	69504305	69504485	reg1012067.p2	4.538	+	BC004373 AK291576 TSC_hg19_v1_chr16_+_69458565	-45831	+	TSC_hg19_v1_chr16_+_69458522 AB009282 NM_030579 BX647922 BC014431	-45879	+	TSC_hg19_v1_chr16_-_69419884 AF002999 BC024890 NM_005652	-84535	-	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	95473	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	95521	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	95786	+	BC004373|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AK291576|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AB009282|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##NM_030579|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BX647922|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BC014431|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AF002999|TERF2|7014|telomeric repeat binding factor 2##BC024890|TERF2|7014|telomeric repeat binding factor 2##NM_005652|TERF2|7014|telomeric repeat binding factor 2##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive	0.997361	0.0	denovo_WM_7:-20:0.815
chr17	58601937	58602062	reg1012445.p1	4.538	+	TSC_hg19_v1_chr17_+_58499858 NM_181707 BC036356 BC048806	-102120	+	TSC_hg19_v1_chr17_-_58469580 NM_032582 AK057301	-132327	-	TSC_hg19_v1_chr17_-_58469447 AF533230	-132541	-	AB587349 TSC_hg19_v1_chr17_-_58603343 AK292227	1330	-	AK307666 TSC_hg19_v1_chr17_-_58603582 BC018121 AF017782 D86981 NM_006380	1538	-	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	75545	+	NM_181707|C17orf64|124773|chromosome 17 open reading frame 64##BC036356|C17orf64|124773|chromosome 17 open reading frame 64##BC048806|C17orf64|124773|chromosome 17 open reading frame 64##NM_032582|USP32|84669|ubiquitin specific peptidase 32##AK057301|USP32|84669|ubiquitin specific peptidase 32##AF533230|USP32|84669|ubiquitin specific peptidase 32##AK292227|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##AK307666|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##BC018121|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##AF017782|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##D86981|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##NM_006380|APPBP2|10513|amyloid beta precursor protein (cytoplasmic tail) binding protein 2##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D	1.257396	0.0	denovo_WM_7:-6:0.259	denovo_WM_7:-21:0.258
chr3	52716311	52716491	reg1009340.p2	4.538	+	AY281068 AF177387 AF225870 AF225871 AF225872 BC115009 BC115010 BC115011 BC116450 BC129934 BC129935 NM_018165 NM_181042	-2668	-	AK095910 BC017996 NM_001124767 TSC_hg19_v1_chr3_+_52570620	-145775	+	BC047747 TSC_hg19_v1_chr3_-_52569042 AK023995 NM_022908	-147345	-	TSC_hg19_v1_chr3_-_52719930 AF197569 NM_018313	3368	-	AF191018 NM_014366 NM_206825 NM_206826 TSC_hg19_v1_chr3_+_52720047 AK315484 AK027514 AK297634 AK027516 BC001024 AB463711 CU674504 EU831969 EU832062	3620	+	BC119670 BC119671 AK027517 NM_152932 AY358579	21215	-	AY281068|PBRM1|55193|polybromo 1##AF177387|PBRM1|55193|polybromo 1##AF225870|PBRM1|55193|polybromo 1##AF225871|PBRM1|55193|polybromo 1##AF225872|PBRM1|55193|polybromo 1##BC115009|PBRM1|55193|polybromo 1##BC115010|PBRM1|55193|polybromo 1##BC115011|PBRM1|55193|polybromo 1##BC116450|PBRM1|55193|polybromo 1##BC129934|PBRM1|55193|polybromo 1##BC129935|PBRM1|55193|polybromo 1##NM_018165|PBRM1|55193|polybromo 1##NM_181042|PBRM1|55193|polybromo 1##AK095910|C3orf78|440957|chromosome 3 open reading frame 78##BC017996|C3orf78|440957|chromosome 3 open reading frame 78##NM_001124767|C3orf78|440957|chromosome 3 open reading frame 78##BC047747|NT5DC2|64943|5'-nucleotidase domain containing 2##AK023995|NT5DC2|64943|5'-nucleotidase domain containing 2##NM_022908|NT5DC2|64943|5'-nucleotidase domain containing 2##AF197569|PBRM1|55193|polybromo 1##NM_018313|PBRM1|55193|polybromo 1##AF191018|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_014366|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206825|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206826|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK315484|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027514|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027516|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC001024|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU831969|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU832062|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC119670|GLT8D1|55830|glycosyltransferase 8 domain containing 1##BC119671|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK027517|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_152932|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AY358579|GLT8D1|55830|glycosyltransferase 8 domain containing 1	0.997015	0.0	denovo_WM_7:-1:0.424	denovo_WM_7:-2:0.424
chr6_dbb_hap3	3160798	3160893	reg1011673.p1	4.538	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.429425	0.0	denovo_WM_7:-54:0.336	denovo_WM_7:-56:0.359
chr10	74056973	74057144	reg1011237.p1	4.537	+	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	-23234	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-80947	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-81270	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	57620	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	57868	-	AK298347 AK296086 TSC_hg19_v1_chr10_-_74283734 NM_001195519	226661	-	NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK298347|MICU1|10367|mitochondrial calcium uptake 1##AK296086|MICU1|10367|mitochondrial calcium uptake 1##NM_001195519|MICU1|10367|mitochondrial calcium uptake 1	0.0	0.0	
chr15	80857880	80857995	reg1010824.p1	4.537	+	AK295763 TSC_hg19_v1_chr15_+_80733623	-124332	+	TSC_hg19_v1_chr15_+_80696739 BC051335 NM_014862 BC036099 BX647212 BX538026 AM392973 DQ890610 DQ894176	-161203	+	M55150 TSC_hg19_v1_chr15_+_80445353 BC002527 CU678020 BT007160	-412561	+	TSC_hg19_v1_chr15_+_80987661 BC115003 NM_021214 BC059401	129725	+	TSC_hg19_v1_chr15_+_80987953 AL390079 AK298606	130072	+	TSC_hg19_v1_chr15_+_81071711 AB103330 AK000465 AY581148 AY581149 AY585237 NM_018689 BC020256	213784	+	AK295763|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BC051335|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##NM_014862|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BC036099|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BX647212|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##BX538026|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##AM392973|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##DQ890610|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##DQ894176|ARNT2|9915|aryl-hydrocarbon receptor nuclear translocator 2##M55150|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)##BC002527|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)##BT007160|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)##BC115003|FAM108C1|58489|family with sequence similarity 108, member C1##NM_021214|FAM108C1|58489|family with sequence similarity 108, member C1##BC059401|FAM108C1|58489|family with sequence similarity 108, member C1##AL390079|FAM108C1|58489|family with sequence similarity 108, member C1##AK298606|FAM108C1|58489|family with sequence similarity 108, member C1##AB103330|KIAA1199|57214|KIAA1199##AK000465|KIAA1199|57214|KIAA1199##AY581148|KIAA1199|57214|KIAA1199##AY581149|KIAA1199|57214|KIAA1199##NM_018689|KIAA1199|57214|KIAA1199##BC020256|KIAA1199|57214|KIAA1199	1.48478	0.0	denovo_WM_7:-51:0.368	denovo_WM_7:-52:0.570	denovo_WM_7:-67:0.496
chr16	48198905	48199048	reg1014932.p1	4.537	+	AY196326 AY040220 NM_033226	-18356	-	TSC_hg19_v1_chr16_+_47495241 X84908 CR936710 BC033657 AK309226	-703737	+	TSC_hg19_v1_chr16_+_47495206 NM_000293 NM_001031835 AK298588	-703788	+	AY040219 NM_033151	67205	-	AF367202 AF411579 NM_032583 NM_145186	70111	-	TSC_hg19_v1_chr16_+_48278210 AJ548761 NM_031490	79218	+	AY196326|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040220|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##NM_033226|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##X84908|PHKB|5257|phosphorylase kinase, beta##CR936710|PHKB|5257|phosphorylase kinase, beta##BC033657|PHKB|5257|phosphorylase kinase, beta##AK309226|PHKB|5257|phosphorylase kinase, beta##NM_000293|PHKB|5257|phosphorylase kinase, beta##NM_001031835|PHKB|5257|phosphorylase kinase, beta##AY040219|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_033151|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AJ548761|LONP2|83752|lon peptidase 2, peroxisomal##NM_031490|LONP2|83752|lon peptidase 2, peroxisomal	0.0	1.032942	CTCF.p2:-10:0.998
chr19	7199823	7200003	reg1010990.p2	4.537	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-100362	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-130198	+	AK315405 NM_001044387 NM_001044388 NM_024341	-130451	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	94047	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	260094	+	TSC_hg19_v1_chr19_+_7460061 AB011093	260164	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.06698	0.0	
chr4	492854	493034	reg1004513.p2	4.537	+	TSC_hg19_v1_chr4_-_492928 AL834155 AK021514	-24	-	BC098116 BC098259 BC098291 BC099730 TSC_hg19_v1_chr4_-_467940 BC040413 BC036795 BC060316 BC065035 AK024359 AK303674	-25041	-	TSC_hg19_v1_chr4_+_331608 BC036854 BC057244 L15309 BC074853	-161274	+	NM_001127178 NM_017733 TSC_hg19_v1_chr4_+_493009 AK296507 AK074815 AB162713	59	+	TSC_hg19_v1_chr4_+_493025 AK074715 AK097244 AK309107 BC144576	82	+	TSC_hg19_v1_chr4_+_493041 AY358538 BC110878	99	+	AL834155|ZNF721|170960|zinc finger protein 721##AK021514|ZNF721|170960|zinc finger protein 721##BC098116|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098259|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098291|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC099730|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC040413|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC060316|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK024359|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK303674|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC036854|ZNF141|7700|zinc finger protein 141##BC057244|ZNF141|7700|zinc finger protein 141##L15309|ZNF141|7700|zinc finger protein 141##BC074853|ZNF141|7700|zinc finger protein 141##NM_001127178|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##NM_017733|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK296507|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074815|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AB162713|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074715|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK097244|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK309107|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##BC144576|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AY358538|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##BC110878|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G	0.0	0.0	
chr4	74401670	74401842	reg1011001.p1	4.537	+	AK290556 NM_001133 BC109020 BC109021 L35486	-54286	+	NM_001134 V01514 AK297669 TSC_hg19_v1_chr4_+_74301937 AK297674 AK314817 BC027881 DQ890942 DQ894103 CU693306	-99801	+	X51365 X51363 X51364 TSC_hg19_v1_chr4_+_74286879	-114894	+	AY217664 BC058835 NM_177532 AY217665 CR749283 AK126346 NM_201431	84463	-	NM_000584 Y00787 AK131067 AK311874 M17017 M26383 BC013615 AF043337 AB590232 DQ890564 DQ893727 BT007067 CR542151 Z11686	204542	+	NM_002993 AK311981 U81234 BC013744 DQ891500 DQ894692 AB463491	300613	+	AK290556|AFM|173|afamin##NM_001133|AFM|173|afamin##BC109020|AFM|173|afamin##BC109021|AFM|173|afamin##L35486|AFM|173|afamin##NM_001134|AFP|174|alpha-fetoprotein##V01514|AFP|174|alpha-fetoprotein##AK297669|AFP|174|alpha-fetoprotein##AK297674|AFP|174|alpha-fetoprotein##AK314817|AFP|174|alpha-fetoprotein##BC027881|AFP|174|alpha-fetoprotein##DQ890942|AFP|174|alpha-fetoprotein##DQ894103|AFP|174|alpha-fetoprotein##X51365|ALB|213|albumin##X51363|ALB|213|albumin##X51364|ALB|213|albumin##AY217664|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##BC058835|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_177532|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AY217665|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##CR749283|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK126346|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_201431|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_000584|IL8|3576|interleukin 8##Y00787|IL8|3576|interleukin 8##AK131067|IL8|3576|interleukin 8##AK311874|IL8|3576|interleukin 8##M17017|IL8|3576|interleukin 8##M26383|IL8|3576|interleukin 8##BC013615|IL8|3576|interleukin 8##DQ890564|IL8|3576|interleukin 8##DQ893727|IL8|3576|interleukin 8##BT007067|IL8|3576|interleukin 8##CR542151|IL8|3576|interleukin 8##Z11686|IL8|3576|interleukin 8##NM_002993|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##AK311981|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##U81234|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##BC013744|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ891500|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ894692|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)	0.986078	0.0	denovo_WM_7:-45:0.720
chr5	1374233	1374346	reg1010373.p1	4.537	+	AB045223 DQ892147 DQ895343 AK027306 BC025305 NM_030782 TSC_hg19_v1_chr5_-_1345095	-29267	-	JF896283 JF896284 AB085628 AB086379 AB086950 JF896280 JF896286 AF015950 AX810036 AX810378 AF018167 NM_001193376 NM_198253	-79198	-	AK055798 NM_182632 AK298257 BC056757	-148799	+	S46955 EF174603 M95167 NM_001044	71237	-	CU676500 BC020166 AK090444 TSC_hg19_v1_chr5_-_1494996	120645	-	TSC_hg19_v1_chr5_-_1523908 AB244719 AB463849	149645	-	AB045223|CLPTM1L|81037|CLPTM1-like##DQ892147|CLPTM1L|81037|CLPTM1-like##DQ895343|CLPTM1L|81037|CLPTM1-like##AK027306|CLPTM1L|81037|CLPTM1-like##BC025305|CLPTM1L|81037|CLPTM1-like##NM_030782|CLPTM1L|81037|CLPTM1-like##JF896283|TERT|7015|telomerase reverse transcriptase##JF896284|TERT|7015|telomerase reverse transcriptase##AB085628|TERT|7015|telomerase reverse transcriptase##AB086379|TERT|7015|telomerase reverse transcriptase##AB086950|TERT|7015|telomerase reverse transcriptase##JF896280|TERT|7015|telomerase reverse transcriptase##AF015950|TERT|7015|telomerase reverse transcriptase##AX810036|TERT|7015|telomerase reverse transcriptase##AX810378|TERT|7015|telomerase reverse transcriptase##AF018167|TERT|7015|telomerase reverse transcriptase##NM_001193376|TERT|7015|telomerase reverse transcriptase##NM_198253|TERT|7015|telomerase reverse transcriptase##AK055798|SLC6A18|348932|solute carrier family 6, member 18##NM_182632|SLC6A18|348932|solute carrier family 6, member 18##AK298257|SLC6A18|348932|solute carrier family 6, member 18##BC056757|SLC6A18|348932|solute carrier family 6, member 18##S46955|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##EF174603|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##M95167|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##NM_001044|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##BC020166|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1##AK090444|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1##AB244719|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1	0.924407	0.0	denovo_WM_7:-58:0.668
chr7	24662748	24662875	reg1009801.p2	4.537	+	TSC_hg19_v1_chr7_+_24613169 BC023638 AF162130 BC012034 AL136836 NM_016447	-49723	+	BC029497 NM_000905 AK312156 K01911 M15789	-338968	+	AK057271 NM_001122833 NM_031414 BC047506 BC059374 BC033018 AF285599 AK292474 AK302689 AF332194 NM_032944	-912895	+	TSC_hg19_v1_chr7_-_24797042 BC099911	134226	-	TSC_hg19_v1_chr7_-_24797055 AK290775 AK314402 NM_001127453	134256	-	TSC_hg19_v1_chr7_-_24797316 BC125065 BC125066 AF073308	134528	-	BC023638|MPP6|51678|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)##AF162130|MPP6|51678|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)##BC012034|MPP6|51678|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)##AL136836|MPP6|51678|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)##NM_016447|MPP6|51678|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)##BC029497|NPY|4852|neuropeptide Y##NM_000905|NPY|4852|neuropeptide Y##AK312156|NPY|4852|neuropeptide Y##K01911|NPY|4852|neuropeptide Y##M15789|NPY|4852|neuropeptide Y##AK057271|STK31|56164|serine/threonine kinase 31##NM_001122833|STK31|56164|serine/threonine kinase 31##NM_031414|STK31|56164|serine/threonine kinase 31##BC047506|STK31|56164|serine/threonine kinase 31##BC059374|STK31|56164|serine/threonine kinase 31##BC033018|STK31|56164|serine/threonine kinase 31##AF285599|STK31|56164|serine/threonine kinase 31##AK292474|STK31|56164|serine/threonine kinase 31##AK302689|STK31|56164|serine/threonine kinase 31##AF332194|STK31|56164|serine/threonine kinase 31##NM_032944|STK31|56164|serine/threonine kinase 31##BC099911|DFNA5|1687|deafness, autosomal dominant 5##AK290775|DFNA5|1687|deafness, autosomal dominant 5##AK314402|DFNA5|1687|deafness, autosomal dominant 5##NM_001127453|DFNA5|1687|deafness, autosomal dominant 5##BC125065|DFNA5|1687|deafness, autosomal dominant 5##BC125066|DFNA5|1687|deafness, autosomal dominant 5##AF073308|DFNA5|1687|deafness, autosomal dominant 5	0.991096	0.0	denovo_WM_7:15:0.496	denovo_WM_7:16:0.496
chr9	130679961	130680104	reg1003022.p1	4.537	+	BC036705 TSC_hg19_v1_chr9_-_130679297 AK292049 AK000600 NM_175039 NM_175040	-772	-	TSC_hg19_v1_chr9_-_130667604 AY358672 AK124217 AK310850	-12417	-	TSC_hg19_v1_chr9_-_130661892 BC036102	-18122	-	TSC_hg19_v1_chr9_-_130689700 BC042184 NM_173492	9701	-	NM_001135219	13043	-	TSC_hg19_v1_chr9_-_130700118 BC015374	20075	-	BC036705|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK292049|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK000600|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175039|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175040|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AY358672|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK124217|LOC100131355|100131355|uncharacterized LOC100131355##AK310850|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036102|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC042184|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_173492|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_001135219|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##BC015374|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit	0.0	0.0	
chr15	28743558	28743726	reg1010629.p1	4.536	+	AF071172 BC015486 BC142951 BC045544 NM_004667	-176371	-	M99564 TSC_hg19_v1_chr15_-_28344462 BC012097 NM_000275	-399209	-	NM_033223 BC029850 BC045709 S82769	-1527095	+	TSC_hg19_v1_chr15_+_29033278 AK302529	289681	+	TSC_hg19_v1_chr15_+_29077475 BC018626	333840	+	NM_001130414 NM_005503 AF047348 BC082986	470207	+	AF071172|HERC2|8924|hect domain and RLD 2##BC015486|HERC2|8924|hect domain and RLD 2##BC142951|HERC2|8924|hect domain and RLD 2##BC045544|HERC2|8924|hect domain and RLD 2##NM_004667|HERC2|8924|hect domain and RLD 2##M99564|OCA2|4948|oculocutaneous albinism II##BC012097|OCA2|4948|oculocutaneous albinism II##NM_000275|OCA2|4948|oculocutaneous albinism II##NM_033223|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##BC029850|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##BC045709|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##S82769|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##AK302529|LOC100289656|100289656|Dexi homolog (mouse) pseudogene##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2	1.528995	0.0	denovo_WM_7:-41:0.269	denovo_WM_7:-43:0.272	denovo_WM_7:-58:0.450
chr15	64055744	64055891	reg1014317.p1	4.536	+	BC017581 BC036918 AK093077 TSC_hg19_v1_chr15_-_63893135	-162775	-	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	-166238	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	-258940	+	TSC_hg19_v1_chr15_-_64126081 U50078	70267	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	70303	-	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	70323	-	BC017581|LOC100130855|100130855|uncharacterized LOC100130855##BC036918|LOC100130855|100130855|uncharacterized LOC100130855##AK093077|LOC100130855|100130855|uncharacterized LOC100130855##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	0.984855	0.0	denovo_WM_7:-31:0.810
chr2	45838501	45838681	reg1013824.p2	4.536	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-184	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-43463	-	BC024033 TSC_hg19_v1_chr2_-_45236562 AF332197 NM_016932	-602041	-	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	40483	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	686000	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	686384	+	AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##BC024033|SIX2|10736|SIX homeobox 2##AF332197|SIX2|10736|SIX homeobox 2##NM_016932|SIX2|10736|SIX homeobox 2##AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1	0.0	0.0	
chr8	72917539	72917664	reg1010468.p2	4.536	+	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-160893	-	AF060154 TSC_hg19_v1_chr8_-_72756646	-160973	-	TSC_hg19_v1_chr8_-_72756449 AF087036 AB463900 BT007169	-161162	-	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	70233	-	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	532042	+	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	1003511	+	AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##AF060154|MSC|9242|musculin##AF087036|MSC|9242|musculin##BT007169|MSC|9242|musculin##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1	0.0	0.471957	CTCF.p2:-16:0.448
chrX	109074233	109074345	reg1009768.p2	4.536	+	TSC_hg19_v1_chrX_-_108976528 AB061713 AK292070 AF030555 NM_004458 NM_022977	-97725	-	TSC_hg19_v1_chrX_-_108976464 Y12777 Y13058 AB061714 BC034959 AK307566 AK294915	-97810	-	DQ891287 DQ894471 DQ896649 DQ896656 DQ896659 DQ896664 EF535525 BC035330 AJ012743 NM_012282 AK223306 AK314923 DQ192294 TSC_hg19_v1_chrX_-_108868398	-205965	-	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	171581	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	172051	+	TSC_hg19_v1_chrX_+_109246360 BC085605	172066	+	AB061713|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK292070|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AF030555|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_004458|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_022977|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y12777|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y13058|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AB061714|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##BC034959|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK307566|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK294915|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##DQ891287|KCNE1L|23630|KCNE1-like##DQ894471|KCNE1L|23630|KCNE1-like##DQ896649|KCNE1L|23630|KCNE1-like##DQ896656|KCNE1L|23630|KCNE1-like##DQ896659|KCNE1L|23630|KCNE1-like##DQ896664|KCNE1L|23630|KCNE1-like##EF535525|KCNE1L|23630|KCNE1-like##BC035330|KCNE1L|23630|KCNE1-like##AJ012743|KCNE1L|23630|KCNE1-like##NM_012282|KCNE1L|23630|KCNE1-like##AK223306|KCNE1L|23630|KCNE1-like##AK314923|KCNE1L|23630|KCNE1-like##DQ192294|KCNE1L|23630|KCNE1-like##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##BC085605|TMEM164|84187|transmembrane protein 164	0.996011	0.0	denovo_WM_7:-33:0.591	denovo_WM_7:-34:0.342
chr1	247593904	247594084	reg1013890.p2	4.535	+	AF410477 AF427617 NM_001127462 NM_001243133 NM_004895 NM_183395	-12644	+	AK314998 NM_001079821 NM_001127461 TSC_hg19_v1_chr1_+_247579474 AB208891	-14525	+	TSC_hg19_v1_chr1_-_247494994 BC007263 NM_032752	-98977	-	NM_001004492 BC137181 BC137205	21301	-	BC137203 BC137204 NM_001004698	60375	+	BC030717 NM_198074	103146	-	AF410477|NLRP3|114548|NLR family, pyrin domain containing 3##AF427617|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127462|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001243133|NLRP3|114548|NLR family, pyrin domain containing 3##NM_004895|NLRP3|114548|NLR family, pyrin domain containing 3##NM_183395|NLRP3|114548|NLR family, pyrin domain containing 3##AK314998|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001079821|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127461|NLRP3|114548|NLR family, pyrin domain containing 3##AB208891|NLRP3|114548|NLR family, pyrin domain containing 3##BC007263|ZNF496|84838|zinc finger protein 496##NM_032752|ZNF496|84838|zinc finger protein 496##NM_001004492|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137181|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137205|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137203|OR2W5|441932|olfactory receptor, family 2, subfamily W, member 5##BC137204|OR2W5|441932|olfactory receptor, family 2, subfamily W, member 5##NM_001004698|OR2W5|441932|olfactory receptor, family 2, subfamily W, member 5##BC030717|OR2C3|81472|olfactory receptor, family 2, subfamily C, member 3##NM_198074|OR2C3|81472|olfactory receptor, family 2, subfamily C, member 3	1.003339	0.0	denovo_WM_7:90:0.672
chr1	25096705	25096883	reg1006835.p2	4.535	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-24789	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-24861	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-24963	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	159631	-	TSC_hg19_v1_chr1_-_25256761 AK301044	159945	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	159992	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.999935	0.0	denovo_WM_7:11:0.244	denovo_WM_7:12:0.629
chr14	103277603	103277783	reg1006394.p1	4.535	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-33793	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-33874	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-218532	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	111305	+	TSC_hg19_v1_chr14_-_103430941 BX248752	153265	-	AB384568 TSC_hg19_v1_chr14_-_103523568	245848	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	0.994809	0.0	denovo_WM_7:-49:0.738
chr1	59239864	59239969	reg1014022.p1	4.535	+	TSC_hg19_v1_chr1_-_59165735 BC167849 CR627323 NM_001085487	-74164	-	TSC_hg19_v1_chr1_-_59147727 BC017579	-92170	-	NM_002353	-196751	-	TSC_hg19_v1_chr1_-_59248287 BC009874	8449	-	BC002646 TSC_hg19_v1_chr1_-_59249716 AK307137 BC068522 NM_002228	9819	-	TSC_hg19_v1_chr1_+_59762504 NM_001113411 NM_018291 BX647626 AK022237 AK090568 AX746514 AK315649 BC014947	522696	+	BC167849|MYSM1|114803|Myb-like, SWIRM and MPN domains 1##CR627323|MYSM1|114803|Myb-like, SWIRM and MPN domains 1##NM_001085487|MYSM1|114803|Myb-like, SWIRM and MPN domains 1##NM_002353|TACSTD2|4070|tumor-associated calcium signal transducer 2##BC009874|JUN|3725|jun proto-oncogene##BC002646|JUN|3725|jun proto-oncogene##BC068522|JUN|3725|jun proto-oncogene##NM_002228|JUN|3725|jun proto-oncogene##NM_001113411|FGGY|55277|FGGY carbohydrate kinase domain containing##NM_018291|FGGY|55277|FGGY carbohydrate kinase domain containing##BX647626|FGGY|55277|FGGY carbohydrate kinase domain containing##AK022237|FGGY|55277|FGGY carbohydrate kinase domain containing##AK090568|FGGY|55277|FGGY carbohydrate kinase domain containing##AK315649|FGGY|55277|FGGY carbohydrate kinase domain containing##BC014947|FGGY|55277|FGGY carbohydrate kinase domain containing	0.0	0.0	
chr17	28690874	28691054	reg1002045.p2	4.535	+	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	-29902	-	NM_000386 TSC_hg19_v1_chr17_-_28619220	-71761	-	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	-72005	-	TSC_hg19_v1_chr17_+_28705953 NM_001304 BC051702 BC045549 BC054116	14975	+	TSC_hg19_v1_chr17_+_28705963 D85390 BC045624	15002	+	TSC_hg19_v1_chr17_+_28705984 U65090 AB385118	15025	+	AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_000386|BLMH|642|bleomycin hydrolase##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_001304|CPD|1362|carboxypeptidase D##BC051702|CPD|1362|carboxypeptidase D##BC045549|CPD|1362|carboxypeptidase D##BC054116|CPD|1362|carboxypeptidase D##D85390|CPD|1362|carboxypeptidase D##BC045624|CPD|1362|carboxypeptidase D##U65090|CPD|1362|carboxypeptidase D	0.0	0.0	
chr17	40007804	40007945	reg1013473.p2	4.535	+	NM_152467 BC067753 AY495339 AK301797 AK302141 AK057224	-13813	+	TSC_hg19_v1_chr17_-_39992513 NM_052935	-15341	-	CU680794 BC013742 TSC_hg19_v1_chr17_-_39992482 BC014132 BC067788 BC016971	-15523	-	TSC_hg19_v1_chr17_-_40021630 AK001434 NM_018143 BC034470 AK301952	13784	-	TSC_hg19_v1_chr17_-_40075180 U18197	67295	-	TSC_hg19_v1_chr17_-_40075205 X64330 AB210035	67335	-	NM_152467|KLHL10|317719|kelch-like 10 (Drosophila)##BC067753|KLHL10|317719|kelch-like 10 (Drosophila)##AY495339|KLHL10|317719|kelch-like 10 (Drosophila)##AK301797|KLHL10|317719|kelch-like 10 (Drosophila)##AK302141|KLHL10|317719|kelch-like 10 (Drosophila)##AK057224|KLHL10|317719|kelch-like 10 (Drosophila)##NM_052935|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC013742|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC014132|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC067788|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##BC016971|NT5C3L|115024|5'-nucleotidase, cytosolic III-like##AK001434|KLHL11|55175|kelch-like 11 (Drosophila)##NM_018143|KLHL11|55175|kelch-like 11 (Drosophila)##BC034470|KLHL11|55175|kelch-like 11 (Drosophila)##AK301952|KLHL11|55175|kelch-like 11 (Drosophila)##U18197|ACLY|47|ATP citrate lyase##X64330|ACLY|47|ATP citrate lyase##AB210035|ACLY|47|ATP citrate lyase	0.99834	0.0	denovo_WM_7:-14:0.457	denovo_WM_7:-15:0.457
chr5	118659834	118659926	reg1002282.p1	4.535	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-55363	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	-55422	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	-252715	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	31738	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	31858	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	128316	+	AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4	0.987829	0.0	
chr6	110026465	110026611	reg1011594.p1	4.535	+	TSC_hg19_v1_chr6_+_110012521 AK222732	-14014	+	TSC_hg19_v1_chr6_+_110012514 AK291671 AK293422 D87464	-14030	+	NM_014845 TSC_hg19_v1_chr6_+_110012488 BC041338	-14082	+	BC126301 BC117298 BC043414 NM_005284 HQ258210 HQ258216 HQ709190 HQ709191	273718	+	TSC_hg19_v1_chr6_-_110500864 BC019019 BC021022 BC044591 AK097838 BC068546	474305	-	TSC_hg19_v1_chr6_-_110501166 NM_001024934 NM_001024935 NM_001024936 NM_003931	474647	-	AK222732|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##AK291671|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##AK293422|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##D87464|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##NM_014845|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##BC041338|FIG4|9896|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)##BC126301|GPR6|2830|G protein-coupled receptor 6##BC117298|GPR6|2830|G protein-coupled receptor 6##BC043414|GPR6|2830|G protein-coupled receptor 6##NM_005284|GPR6|2830|G protein-coupled receptor 6##HQ258210|GPR6|2830|G protein-coupled receptor 6##HQ258216|GPR6|2830|G protein-coupled receptor 6##HQ709190|GPR6|2830|G protein-coupled receptor 6##BC044591|WASF1|8936|WAS protein family, member 1##AK097838|WASF1|8936|WAS protein family, member 1##BC068546|WASF1|8936|WAS protein family, member 1##NM_001024934|WASF1|8936|WAS protein family, member 1##NM_001024935|WASF1|8936|WAS protein family, member 1##NM_001024936|WASF1|8936|WAS protein family, member 1##NM_003931|WASF1|8936|WAS protein family, member 1	0.0	1.007859	CTCF.p2:5:0.998
chr6_dbb_hap3	2100366	2100480	reg1011392.p1	4.535	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.994572	0.0	
chr10	98413165	98413310	reg1013693.p1	4.534	+	TSC_hg19_v1_chr10_-_98346798 AF269150 BC136788 BC136789 BC144412 NM_020123	-66414	-	TSC_hg19_v1_chr10_-_98346770 AK314348	-66459	-	TSC_hg19_v1_chr10_-_98346739 AF160213	-66565	-	BX648550 TSC_hg19_v1_chr10_-_98480272 AK125635 NM_152309	67004	-	TSC_hg19_v1_chr10_+_98592020 NM_001170765 NM_001170766 AL832106 AK308356 BC053359	178816	+	TSC_hg19_v1_chr10_-_98592186 AB593180	178963	-	AF269150|TM9SF3|56889|transmembrane 9 superfamily member 3##BC136788|TM9SF3|56889|transmembrane 9 superfamily member 3##BC136789|TM9SF3|56889|transmembrane 9 superfamily member 3##BC144412|TM9SF3|56889|transmembrane 9 superfamily member 3##NM_020123|TM9SF3|56889|transmembrane 9 superfamily member 3##AK314348|TM9SF3|56889|transmembrane 9 superfamily member 3##AF160213|TM9SF3|56889|transmembrane 9 superfamily member 3##BX648550|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##AK125635|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##NM_152309|PIK3AP1|118788|phosphoinositide-3-kinase adaptor protein 1##NM_001170765|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170766|LCOR|84458|ligand dependent nuclear receptor corepressor##AL832106|LCOR|84458|ligand dependent nuclear receptor corepressor##BC053359|LCOR|84458|ligand dependent nuclear receptor corepressor	2.586569	0.0	denovo_WM_7:-32:0.341	denovo_WM_7:-66:0.971
chr1	22105107	22105238	reg1007976.p2	4.534	+	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	-109339	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	-126825	-	AB003930 TSC_hg19_v1_chr1_-_21949064	-156135	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	4353	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	4462	-	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	4527	-	AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48	1.9974	0.0	denovo_WM_7:81:0.976
chr14	72468570	72468717	reg1009787.p2	4.534	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-68777	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-69490	+	AK294895 NM_001204423	-69827	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	892165	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	924492	+	AK098542 AF311602 NM_178441	985014	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.996445	0.045683	
chr15	85106810	85106897	reg1007789.p1	4.534	+	NM_001243531	-265612	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-784026	+	TSC_hg19_v1_chr15_+_84116176 BC035598 AF036269 AF036270 AF036271 AF036272 CU692124 X99664	-990625	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	37428	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	90619	-	TSC_hg19_v1_chr15_-_85197503 AF161382 AK295372 BC014115 AK027794 AK055729 AK225199	90653	-	NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##BC035598|SH3GL3|6457|SH3-domain GRB2-like 3##AF036269|SH3GL3|6457|SH3-domain GRB2-like 3##AF036270|SH3GL3|6457|SH3-domain GRB2-like 3##AF036271|SH3GL3|6457|SH3-domain GRB2-like 3##AF036272|SH3GL3|6457|SH3-domain GRB2-like 3##X99664|SH3GL3|6457|SH3-domain GRB2-like 3##AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73##AF161382|WDR73|84942|WD repeat domain 73##AK295372|WDR73|84942|WD repeat domain 73##BC014115|WDR73|84942|WD repeat domain 73##AK027794|WDR73|84942|WD repeat domain 73##AK055729|WDR73|84942|WD repeat domain 73##AK225199|WDR73|84942|WD repeat domain 73	0.990304	0.0	denovo_WM_7:20:0.237	denovo_WM_7:21:0.237	denovo_WM_7:22:0.237	denovo_WM_7:23:0.237
chr1	98955870	98955980	reg1013597.p1	4.534	+	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	-569319	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	-569366	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	-569436	-	TSC_hg19_v1_chr1_+_99127278 NM_015976 NM_152238 AK025031 AK223229 AL049989 AF121857 AK298211 BC018105 BC010349	171383	+	BC040174 AK295688 BC140086 BC143086 AY634620 BC136350 BC144000 AY574039 FJ472844 NM_001010861 NM_001037317	514387	-	AF541281 NM_001166252 NM_014839 AB007924 AK056665 AY304518 AB384482 BC042963 TSC_hg19_v1_chr1_+_99730047 AK291369 AK297417	774025	+	NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##NM_015976|SNX7|51375|sorting nexin 7##NM_152238|SNX7|51375|sorting nexin 7##AK025031|SNX7|51375|sorting nexin 7##AK223229|SNX7|51375|sorting nexin 7##AL049989|SNX7|51375|sorting nexin 7##AF121857|SNX7|51375|sorting nexin 7##AK298211|SNX7|51375|sorting nexin 7##BC018105|SNX7|51375|sorting nexin 7##BC010349|SNX7|51375|sorting nexin 7##BC040174|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AK295688|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC140086|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC143086|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AY634620|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC136350|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##BC144000|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AY574039|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##FJ472844|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_001010861|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##NM_001037317|LPPR5|163404|lipid phosphate phosphatase-related protein type 5##AF541281|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_001166252|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##NM_014839|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AB007924|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AY304518|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##BC042963|LPPR4|9890|lipid phosphate phosphatase-related protein type 4##AK291369|LPPR4|9890|lipid phosphate phosphatase-related protein type 4	0.0	0.0	
chr3	124490106	124490284	reg1010540.p2	4.534	+	TSC_hg19_v1_chr3_+_124449303 AL080099 AB062285 BC000364 BC007511 EU832341 EU832426 EU921886 EU921887 EU921888 EU921889 EU921890 EU921891 EU921892 EU921893 EU921894 EU921895 AK291306 D86227 D86228 D86230 CR456787 M36661	-40879	+	J03626 NM_000373 TSC_hg19_v1_chr3_+_124449256	-40956	+	NM_007064 TSC_hg19_v1_chr3_+_124303522 BC058015 AB011422	-186667	+	TSC_hg19_v1_chr3_-_124605863 AB587397 DQ892778 DQ896025 M35011 AK315429 J05633	115671	-	TSC_hg19_v1_chr3_-_124606213 BC006541 NM_002213 X53002	116016	-	AF286113 AB035807 AY358831 TSC_hg19_v1_chr3_-_124653596 NM_033049	163388	-	AL080099|UMPS|7372|uridine monophosphate synthetase##AB062285|UMPS|7372|uridine monophosphate synthetase##BC000364|UMPS|7372|uridine monophosphate synthetase##BC007511|UMPS|7372|uridine monophosphate synthetase##EU832341|UMPS|7372|uridine monophosphate synthetase##EU832426|UMPS|7372|uridine monophosphate synthetase##EU921886|UMPS|7372|uridine monophosphate synthetase##EU921887|UMPS|7372|uridine monophosphate synthetase##EU921888|UMPS|7372|uridine monophosphate synthetase##EU921889|UMPS|7372|uridine monophosphate synthetase##EU921890|UMPS|7372|uridine monophosphate synthetase##EU921891|UMPS|7372|uridine monophosphate synthetase##EU921892|UMPS|7372|uridine monophosphate synthetase##EU921893|UMPS|7372|uridine monophosphate synthetase##EU921894|UMPS|7372|uridine monophosphate synthetase##EU921895|UMPS|7372|uridine monophosphate synthetase##AK291306|UMPS|7372|uridine monophosphate synthetase##D86227|UMPS|7372|uridine monophosphate synthetase##D86228|UMPS|7372|uridine monophosphate synthetase##D86230|UMPS|7372|uridine monophosphate synthetase##CR456787|UMPS|7372|uridine monophosphate synthetase##M36661|UMPS|7372|uridine monophosphate synthetase##J03626|UMPS|7372|uridine monophosphate synthetase##NM_000373|UMPS|7372|uridine monophosphate synthetase##NM_007064|KALRN|8997|kalirin, RhoGEF kinase##BC058015|KALRN|8997|kalirin, RhoGEF kinase##AB011422|KALRN|8997|kalirin, RhoGEF kinase##DQ892778|ITGB5|3693|integrin, beta 5##DQ896025|ITGB5|3693|integrin, beta 5##M35011|ITGB5|3693|integrin, beta 5##AK315429|ITGB5|3693|integrin, beta 5##J05633|ITGB5|3693|integrin, beta 5##BC006541|ITGB5|3693|integrin, beta 5##NM_002213|ITGB5|3693|integrin, beta 5##X53002|ITGB5|3693|integrin, beta 5##AF286113|MUC13|56667|mucin 13, cell surface associated##AB035807|MUC13|56667|mucin 13, cell surface associated##AY358831|MUC13|56667|mucin 13, cell surface associated##NM_033049|MUC13|56667|mucin 13, cell surface associated	0.977687	0.0	denovo_WM_7:44:0.450	denovo_WM_7:45:0.504
chr5	179159156	179159304	reg1010013.p1	4.534	+	TSC_hg19_v1_chr5_+_179132740 BC050534 AB527263 CU678492 DQ890627 DQ893794 S67659	-26478	+	TSC_hg19_v1_chr5_+_179126026 M94859 L18887 L10284 AK312334 AJ271880	-33109	+	TSC_hg19_v1_chr5_+_179125995 BC003552 BC042843	-33236	+	TSC_hg19_v1_chr5_+_179159831 D83785 NM_014757 AB209135 BC047937	622	+	NM_145867 BC029498 U11552 AK312033 TSC_hg19_v1_chr5_+_179221016 U09353 DQ890962 DQ894134 AB590307	61802	+	AK023137 NM_054013	70644	-	BC050534|CANX|821|calnexin##DQ890627|CANX|821|calnexin##DQ893794|CANX|821|calnexin##M94859|CANX|821|calnexin##L18887|CANX|821|calnexin##L10284|CANX|821|calnexin##AK312334|CANX|821|calnexin##AJ271880|CANX|821|calnexin##BC003552|CANX|821|calnexin##BC042843|CANX|821|calnexin##D83785|MAML1|9794|mastermind-like 1 (Drosophila)##NM_014757|MAML1|9794|mastermind-like 1 (Drosophila)##AB209135|MAML1|9794|mastermind-like 1 (Drosophila)##BC047937|MAML1|9794|mastermind-like 1 (Drosophila)##NM_145867|LTC4S|4056|leukotriene C4 synthase##BC029498|LTC4S|4056|leukotriene C4 synthase##U11552|LTC4S|4056|leukotriene C4 synthase##AK312033|LTC4S|4056|leukotriene C4 synthase##U09353|LTC4S|4056|leukotriene C4 synthase##DQ890962|LTC4S|4056|leukotriene C4 synthase##DQ894134|LTC4S|4056|leukotriene C4 synthase##AK023137|MGAT4B|11282|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B##NM_054013|MGAT4B|11282|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B	0.0	0.013249	
chr9	75142206	75142335	reg1013215.p1	4.534	+	AF417578 NM_138691	-5554	+	TSC_hg19_v1_chr9_-_74980125 AF062346 BC011018 BC027707 NM_001102420 NM_001102421 NM_006007	-162170	-	AK025782 BC073131 TSC_hg19_v1_chr9_-_74979791	-162545	-	AB587538 AF003341 AY390731 BT006921 DQ890669 DQ893850 BC001505 TSC_hg19_v1_chr9_-_75567970 AB209821 AK000118 AK026641 AK302168	425675	-	NM_000689	425962	-	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	624508	+	AF417578|TMC1|117531|transmembrane channel-like 1##NM_138691|TMC1|117531|transmembrane channel-like 1##AF062346|ZFAND5|7763|zinc finger, AN1-type domain 5##BC011018|ZFAND5|7763|zinc finger, AN1-type domain 5##BC027707|ZFAND5|7763|zinc finger, AN1-type domain 5##NM_001102420|ZFAND5|7763|zinc finger, AN1-type domain 5##NM_001102421|ZFAND5|7763|zinc finger, AN1-type domain 5##NM_006007|ZFAND5|7763|zinc finger, AN1-type domain 5##AK025782|ZFAND5|7763|zinc finger, AN1-type domain 5##BC073131|ZFAND5|7763|zinc finger, AN1-type domain 5##AF003341|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AY390731|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##BT006921|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##DQ890669|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##DQ893850|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##BC001505|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AB209821|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK000118|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK026641|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK302168|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1	0.015385	0.0	
chrX	143268352	143268479	reg1013692.p2	4.534	+	GU727624 NM_001012989	-301243	+	NM_001009615	-463900	-	TSC_hg19_v1_chrX_-_142723922 NM_001184749	-544492	-	DQ336118 DQ336119 DQ336120 DQ336121 NM_001009614	1060691	+	TSC_hg19_v1_chrX_+_144899439 NM_001144003 NM_001144004 NM_001144005 NM_032539 AK096278 CR627412 AK289732	1630998	+	NM_001144006 NM_001144008 NM_001144009 NM_001144010 BC113011 BC113012 TSC_hg19_v1_chrX_+_144903056	1634549	+	GU727624|UBE2NL|389898|ubiquitin-conjugating enzyme E2N-like##NM_001012989|UBE2NL|389898|ubiquitin-conjugating enzyme E2N-like##NM_001009615|SPANXN2|494119|SPANX family, member N2##NM_001184749|SLITRK4|139065|SLIT and NTRK-like family, member 4##DQ336118|SPANXN1|494118|SPANX family, member N1##DQ336119|SPANXN1|494118|SPANX family, member N1##DQ336120|SPANXN1|494118|SPANX family, member N1##DQ336121|SPANXN1|494118|SPANX family, member N1##NM_001009614|SPANXN1|494118|SPANX family, member N1##NM_001144003|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144004|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144005|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_032539|SLITRK2|84631|SLIT and NTRK-like family, member 2##AK096278|SLITRK2|84631|SLIT and NTRK-like family, member 2##CR627412|SLITRK2|84631|SLIT and NTRK-like family, member 2##AK289732|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144006|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144008|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144009|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144010|SLITRK2|84631|SLIT and NTRK-like family, member 2##BC113011|SLITRK2|84631|SLIT and NTRK-like family, member 2##BC113012|SLITRK2|84631|SLIT and NTRK-like family, member 2	0.936989	0.0	denovo_WM_7:-32:0.630
chrY	1405565	1405745	reg1003193.p2	4.534	+	BC035407 NM_002183	-147	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-54072	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-67941	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	55314	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	116146	-	AK301844 NM_001173473	116996	-	BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like	0.0	0.0	
chr17	38771962	38772070	reg1000318.p2	4.533	+	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	-50298	-	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-114170	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-172197	+	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	32054	-	BC069196 TSC_hg19_v1_chr17_-_38804818	32780	-	BX538083 EU832123 EU832217 BC032815 AK092967 AK308598 NM_152349	49334	-	BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BX538083|KRT222|125113|keratin 222##EU832123|KRT222|125113|keratin 222##EU832217|KRT222|125113|keratin 222##BC032815|KRT222|125113|keratin 222##AK308598|KRT222|125113|keratin 222##NM_152349|KRT222|125113|keratin 222	0.0	0.03937	
chrX	47344314	47344428	reg1012490.p1	4.533	+	BC015023 NM_007130 NM_153380	-2027	-	U28687 NM_003446 BC075003 AB528013 EU446919	-114348	+	TSC_hg19_v1_chrX_+_47092422 AK055588 AK098394 BC073960 BC063668 AB073597 BC000350 AB385092 U44839 AK294635	-251906	+	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	76196	+	TSC_hg19_v1_chrX_+_47441773 NM_003254 AK074854 AK296116 BC000866 BC007097	97352	+	TSC_hg19_v1_chrX_+_47441834 X03124 M12670 AK310206 AK311937 AK307222 M59906 X02598	97452	+	BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##AK055588|USP11|8237|ubiquitin specific peptidase 11##AK098394|USP11|8237|ubiquitin specific peptidase 11##BC073960|USP11|8237|ubiquitin specific peptidase 11##BC063668|USP11|8237|ubiquitin specific peptidase 11##AB073597|USP11|8237|ubiquitin specific peptidase 11##BC000350|USP11|8237|ubiquitin specific peptidase 11##U44839|USP11|8237|ubiquitin specific peptidase 11##AK294635|USP11|8237|ubiquitin specific peptidase 11##NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##NM_003254|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK074854|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK296116|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC000866|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC007097|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X03124|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M12670|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK310206|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK311937|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M59906|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X02598|TIMP1|7076|TIMP metallopeptidase inhibitor 1	0.97418	0.0	denovo_WM_7:11:0.688
chr11	128441257	128441349	reg1002879.p1	4.532	+	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-49169	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-49340	-	BC113593 BC113597 TSC_hg19_v1_chr11_+_126873309	-1567998	+	BX640634 NM_001143820	16149	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	122495	+	TSC_hg19_v1_chr11_+_128563966 AK313370	122658	+	BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC113593|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BC113597|KIRREL3-AS3|283165|KIRREL3 antisense RNA 3 (non-protein coding)##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1	0.6889	0.0	
chr20	61641797	61641916	reg1001925.p1	4.532	+	BC137288 BC137308 NM_080606	-3470	-	TSC_hg19_v1_chr20_+_61584095 AK095473 BC038593	-57731	+	NM_022082 TSC_hg19_v1_chr20_+_61584053 AK125597 BC025312 AK074107	-57826	+	TSC_hg19_v1_chr20_-_61847469 BC050284 NM_017798	205667	-	AY358835 AY358836 AF311388 NM_022161 NM_139317 BC014475 DQ893077 DQ896338 AF301009 AY517497	225485	+	TSC_hg19_v1_chr20_-_61884664 AK308958	242877	-	BC137288|BHLHE23|128408|basic helix-loop-helix family, member e23##BC137308|BHLHE23|128408|basic helix-loop-helix family, member e23##NM_080606|BHLHE23|128408|basic helix-loop-helix family, member e23##AK095473|SLC17A9|63910|solute carrier family 17, member 9##BC038593|SLC17A9|63910|solute carrier family 17, member 9##NM_022082|SLC17A9|63910|solute carrier family 17, member 9##AK125597|SLC17A9|63910|solute carrier family 17, member 9##BC025312|SLC17A9|63910|solute carrier family 17, member 9##AK074107|SLC17A9|63910|solute carrier family 17, member 9##BC050284|YTHDF1|54915|YTH domain family, member 1##NM_017798|YTHDF1|54915|YTH domain family, member 1##AY358835|BIRC7|79444|baculoviral IAP repeat containing 7##AY358836|BIRC7|79444|baculoviral IAP repeat containing 7##AF311388|BIRC7|79444|baculoviral IAP repeat containing 7##NM_022161|BIRC7|79444|baculoviral IAP repeat containing 7##NM_139317|BIRC7|79444|baculoviral IAP repeat containing 7##BC014475|BIRC7|79444|baculoviral IAP repeat containing 7##DQ893077|BIRC7|79444|baculoviral IAP repeat containing 7##DQ896338|BIRC7|79444|baculoviral IAP repeat containing 7##AF301009|BIRC7|79444|baculoviral IAP repeat containing 7##AY517497|BIRC7|79444|baculoviral IAP repeat containing 7##AK308958|NKAIN4|128414|Na+/K+ transporting ATPase interacting 4	0.0	0.0	
chr2	112852648	112852765	reg1009747.p1	4.532	+	TSC_hg19_v1_chr2_+_112813153 AK290294 AY429534 AY429535	-39519	+	TSC_hg19_v1_chr2_+_112812903 BC115373	-39759	+	NM_032824 AK027587 TSC_hg19_v1_chr2_+_112812871	-39865	+	TSC_hg19_v1_chr2_+_112895958 AK094759 NM_001128165 NM_153214 BC035784	43283	+	TSC_hg19_v1_chr2_+_112896040 BC126986 BC126987	43393	+	BC032001 AK315329 AF334161 NM_032494	159926	-	AK290294|TMEM87B|84910|transmembrane protein 87B##AY429534|TMEM87B|84910|transmembrane protein 87B##AY429535|TMEM87B|84910|transmembrane protein 87B##BC115373|TMEM87B|84910|transmembrane protein 87B##NM_032824|TMEM87B|84910|transmembrane protein 87B##AK027587|TMEM87B|84910|transmembrane protein 87B##AK094759|FBLN7|129804|fibulin 7##NM_001128165|FBLN7|129804|fibulin 7##NM_153214|FBLN7|129804|fibulin 7##BC035784|FBLN7|129804|fibulin 7##BC126986|FBLN7|129804|fibulin 7##BC126987|FBLN7|129804|fibulin 7##BC032001|ZC3H8|84524|zinc finger CCCH-type containing 8##AK315329|ZC3H8|84524|zinc finger CCCH-type containing 8##AF334161|ZC3H8|84524|zinc finger CCCH-type containing 8##NM_032494|ZC3H8|84524|zinc finger CCCH-type containing 8	3.227497	0.0	denovo_WM_7:44:0.454	denovo_WM_7:45:0.227	denovo_WM_7:59:0.279	denovo_WM_7:60:0.338	denovo_WM_7:61:0.277	denovo_WM_7:75:0.285	denovo_WM_7:76:0.562
chr2	8685411	8685591	reg1004295.p2	4.532	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1627914	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1667638	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1678798	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	136702	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	292218	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	458320	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr3	122361995	122362119	reg1002009.p2	4.532	+	BC101701 BC101703 BC143573 AK097916 NM_152615	-27565	+	TSC_hg19_v1_chr3_+_122296496 AK309863 NM_001113523 BX647656 DQ063586	-65577	+	AF307338 AF307339 TSC_hg19_v1_chr3_-_122283426 NM_001146103 NM_031458	-78585	-	TSC_hg19_v1_chr3_+_122399703 NM_017554 AK304269	37641	+	CU680100 CU687786 DQ893066 DQ896319 AB590214 AK096705 BC063629 TSC_hg19_v1_chr3_-_122512667 AF400663 BC011897 AK289410 NM_024610	150546	-	TSC_hg19_v1_chr3_+_122513913 NM_032839 AK027690 AK291176 BC039821 BC033738	151859	+	BC101701|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BC101703|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BC143573|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##AK097916|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##NM_152615|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##NM_001113523|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##BX647656|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##DQ063586|PARP15|165631|poly (ADP-ribose) polymerase family, member 15##AF307338|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##AF307339|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_001146103|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_031458|PARP9|83666|poly (ADP-ribose) polymerase family, member 9##NM_017554|PARP14|54625|poly (ADP-ribose) polymerase family, member 14##AK304269|PARP14|54625|poly (ADP-ribose) polymerase family, member 14##DQ893066|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##DQ896319|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AK096705|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##BC063629|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AF400663|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##BC011897|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##AK289410|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##NM_024610|HSPBAP1|79663|HSPB (heat shock 27kDa) associated protein 1##NM_032839|DIRC2|84925|disrupted in renal carcinoma 2##AK027690|DIRC2|84925|disrupted in renal carcinoma 2##AK291176|DIRC2|84925|disrupted in renal carcinoma 2##BC039821|DIRC2|84925|disrupted in renal carcinoma 2##BC033738|DIRC2|84925|disrupted in renal carcinoma 2	0.0	0.0	
chr3	138297141	138297272	reg1011194.p1	4.532	+	TSC_hg19_v1_chr3_+_138153427 BC037292 AK125080 AK289530	-143767	+	NM_031913 TSC_hg19_v1_chr3_+_138153418	-143790	+	NM_001252090	-229237	+	TSC_hg19_v1_chr3_-_138313097 AF202146 AF289495 AK225440 AK299003 AK295866 AK294587 AK301913 BC030598 NM_024491 AK314314	15904	-	AK125477 TSC_hg19_v1_chr3_+_138327450	30242	+	NM_001033030 NM_001033031 NM_001033032 TSC_hg19_v1_chr3_+_138327638 BC012478	30410	+	BC037292|ESYT3|83850|extended synaptotagmin-like protein 3##AK125080|ESYT3|83850|extended synaptotagmin-like protein 3##AK289530|ESYT3|83850|extended synaptotagmin-like protein 3##NM_031913|ESYT3|83850|extended synaptotagmin-like protein 3##NM_001252090|MRAS|22808|muscle RAS oncogene homolog##AF202146|CEP70|80321|centrosomal protein 70kDa##AF289495|CEP70|80321|centrosomal protein 70kDa##AK225440|CEP70|80321|centrosomal protein 70kDa##AK299003|CEP70|80321|centrosomal protein 70kDa##AK295866|CEP70|80321|centrosomal protein 70kDa##AK294587|CEP70|80321|centrosomal protein 70kDa##AK301913|CEP70|80321|centrosomal protein 70kDa##BC030598|CEP70|80321|centrosomal protein 70kDa##NM_024491|CEP70|80321|centrosomal protein 70kDa##AK314314|CEP70|80321|centrosomal protein 70kDa##AK125477|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033030|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033031|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033032|FAIM|55179|Fas apoptotic inhibitory molecule##BC012478|FAIM|55179|Fas apoptotic inhibitory molecule	0.019293	0.0	
chr7	73628050	73628117	reg1010886.p2	4.532	+	TSC_hg19_v1_chr7_+_73624361 AF252613	-3729	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	-3747	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	-3801	+	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	40628	-	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	40653	-	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	75704	+	AF252613|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2	0.0	0.0	
chr10	12086044	12086204	reg1011841.p2	4.531	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-1042	-	TSC_hg19_v1_chr10_-_12084777 BC054011 AK310925 BC114964 BC115737 BC090919 NM_015542 AF318574 AF301013 AK096191	-1316	-	AK056703 TSC_hg19_v1_chr10_-_11936707	-149422	-	TSC_hg19_v1_chr10_+_12110952 NM_018706	24812	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	24883	+	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	85529	+	NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AK310925|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC114964|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC115737|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC090919|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_015542|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF318574|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF301013|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AK096191|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AK056703|LOC219731|219731|uncharacterized LOC219731##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)	0.0	0.047657	
chr15	37384987	37385167	reg1002112.p2	4.531	+	NM_032499	-452272	+	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	-513178	+	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	-1546691	-	CU674744 EU831754 EU831831 TSC_hg19_v1_chr15_-_37390403 AK294411 AK311546 AK056038 NM_172315	5389	-	AK056620 NM_172316 AB463111 CU690674 EU446635 EU831824 AK055936	6562	-	TSC_hg19_v1_chr15_-_37391935 AF178948 AF179896 AF179897 AF179898 AF179899	6842	-	NM_032499|C15orf41|84529|chromosome 15 open reading frame 41##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##EU831754|MEIS2|4212|Meis homeobox 2##EU831831|MEIS2|4212|Meis homeobox 2##AK294411|MEIS2|4212|Meis homeobox 2##AK311546|MEIS2|4212|Meis homeobox 2##AK056038|MEIS2|4212|Meis homeobox 2##NM_172315|MEIS2|4212|Meis homeobox 2##AK056620|MEIS2|4212|Meis homeobox 2##NM_172316|MEIS2|4212|Meis homeobox 2##EU446635|MEIS2|4212|Meis homeobox 2##EU831824|MEIS2|4212|Meis homeobox 2##AK055936|MEIS2|4212|Meis homeobox 2##AF178948|MEIS2|4212|Meis homeobox 2##AF179896|MEIS2|4212|Meis homeobox 2##AF179897|MEIS2|4212|Meis homeobox 2##AF179898|MEIS2|4212|Meis homeobox 2##AF179899|MEIS2|4212|Meis homeobox 2	0.0	0.0	
chr16	10925897	10926038	reg1012585.p1	4.531	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-13419	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-88263	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-137202	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	45145	+	BC071683 TSC_hg19_v1_chr16_-_11036171	110199	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	110268	-	BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)	0.965079	0.0	denovo_WM_7:-46:0.775
chr1	66796568	66796706	reg1012462.p2	4.531	+	AB209081 NM_001037340 AK290006	-338234	+	AK289969 NM_002600 L20966	-537778	+	NM_001037341 CR749667 BC071607 BC036108	-538442	+	L12685 NM_001037339 M97515 L12686 TSC_hg19_v1_chr1_+_66797927	1216	+	TSC_hg19_v1_chr1_+_66798096 AK294441	1458	+	AK299941 AK298970 NM_032291 TSC_hg19_v1_chr1_+_66999843 AB210039 AL136561	203247	+	AB209081|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037340|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK290006|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK289969|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_002600|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##L20966|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037341|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##CR749667|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##BC071607|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##BC036108|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037339|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##M97515|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##L12686|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK294441|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK299941|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AK298970|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##NM_032291|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AB210039|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AL136561|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1	0.0	0.0	
chr20	30165684	30165796	reg1012200.p1	4.531	+	TSC_hg19_v1_chr20_+_30135200 BC053868	-30506	+	TSC_hg19_v1_chr20_+_30102316 AJ420895 DQ896206 CU687568 AF515663	-63407	+	AF172086 BC062595 TSC_hg19_v1_chr20_+_30102287 AF483215 AJ345029 AK074686	-63459	+	TSC_hg19_v1_chr20_+_30193091 NM_002165 NM_181353 AK313786 BC012420 BC000613 S78986 X77956 AK291152 D13889 D13890 S78825 AB463776 CU680316 DQ891293 DQ893342 DQ894477 DQ896657 EU176458 EU176468 EU176808 BT007443	27396	+	AF257180 NM_032609 BC057779	59962	+	BC032024 TSC_hg19_v1_chr20_-_30288101	122357	-	AJ420895|HM13|81502|histocompatibility (minor) 13##DQ896206|HM13|81502|histocompatibility (minor) 13##AF515663|HM13|81502|histocompatibility (minor) 13##AF172086|HM13|81502|histocompatibility (minor) 13##BC062595|HM13|81502|histocompatibility (minor) 13##AF483215|HM13|81502|histocompatibility (minor) 13##AJ345029|HM13|81502|histocompatibility (minor) 13##AK074686|HM13|81502|histocompatibility (minor) 13##NM_002165|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##NM_181353|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##AK313786|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##BC012420|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##BC000613|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##S78986|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##X77956|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##AK291152|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##D13889|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##D13890|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##S78825|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ891293|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ893342|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ894477|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##DQ896657|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##EU176458|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##EU176468|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##EU176808|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##BT007443|ID1|3397|inhibitor of DNA binding 1, dominant negative helix-loop-helix protein##AF257180|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##NM_032609|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)##BC057779|COX4I2|84701|cytochrome c oxidase subunit IV isoform 2 (lung)	1.992834	0.0	
chr2	97472238	97472304	reg1011350.p1	4.531	+	AK293915 TSC_hg19_v1_chr2_+_97454352	-17934	+	TSC_hg19_v1_chr2_+_97426638 BC063295 NM_020184 AF202777 AB046812	-45522	+	AK304515 AK075347 AK295463 AK299740 AK301077 AK308085 AK316331 AL136617 TSC_hg19_v1_chr2_-_97405802 AK312249 NM_001142292 NM_030805 AK310100	-66458	-	TSC_hg19_v1_chr2_+_97482006 BC037272 AK126847 NM_017623 NM_199078 BC007199 AF216965 AK000025 CU675553	10211	+	AF492401 AY196212 BC107056 AK057011 AK092564 AX747600 NM_144994	37474	-	TSC_hg19_v1_chr2_-_97523744 AB528054 CU689148 AF151034 BC031303 AB209367 AK312193 NM_016466	51471	-	AK293915|CNNM4|26504|cyclin M4##BC063295|CNNM4|26504|cyclin M4##NM_020184|CNNM4|26504|cyclin M4##AF202777|CNNM4|26504|cyclin M4##AB046812|CNNM4|26504|cyclin M4##AK304515|LMAN2L|81562|lectin, mannose-binding 2-like##AK075347|LMAN2L|81562|lectin, mannose-binding 2-like##AK295463|LMAN2L|81562|lectin, mannose-binding 2-like##AK299740|LMAN2L|81562|lectin, mannose-binding 2-like##AK301077|LMAN2L|81562|lectin, mannose-binding 2-like##AK308085|LMAN2L|81562|lectin, mannose-binding 2-like##AK316331|LMAN2L|81562|lectin, mannose-binding 2-like##AL136617|LMAN2L|81562|lectin, mannose-binding 2-like##AK312249|LMAN2L|81562|lectin, mannose-binding 2-like##NM_001142292|LMAN2L|81562|lectin, mannose-binding 2-like##NM_030805|LMAN2L|81562|lectin, mannose-binding 2-like##AK310100|LMAN2L|81562|lectin, mannose-binding 2-like##BC037272|CNNM3|26505|cyclin M3##AK126847|CNNM3|26505|cyclin M3##NM_017623|CNNM3|26505|cyclin M3##NM_199078|CNNM3|26505|cyclin M3##BC007199|CNNM3|26505|cyclin M3##AF216965|CNNM3|26505|cyclin M3##AK000025|CNNM3|26505|cyclin M3##AF492401|ANKRD23|200539|ankyrin repeat domain 23##AY196212|ANKRD23|200539|ankyrin repeat domain 23##BC107056|ANKRD23|200539|ankyrin repeat domain 23##AK057011|ANKRD23|200539|ankyrin repeat domain 23##AK092564|ANKRD23|200539|ankyrin repeat domain 23##NM_144994|ANKRD23|200539|ankyrin repeat domain 23##AF151034|ANKRD39|51239|ankyrin repeat domain 39##BC031303|ANKRD39|51239|ankyrin repeat domain 39##AK312193|ANKRD39|51239|ankyrin repeat domain 39##NM_016466|ANKRD39|51239|ankyrin repeat domain 39	0.0	0.0	
chr3	130405844	130405957	reg1011481.p1	4.531	+	AM774225 NM_001102608	-126723	+	EU085556 NM_153264 AM906078	-341482	+	TSC_hg19_v1_chr3_-_129830331 BC071676	-575551	-	BC127105 BC127106 TSC_hg19_v1_chr3_-_130465651 AK314219 BC110318 BC009899 BC017332 BC057239 NM_014602	59703	-	NM_001199180 NM_001199181 NM_001199182 AK296470	163506	+	TSC_hg19_v1_chr3_+_130612841 AB037768 NM_001199179 NM_001001485 NM_001199183 NM_001199184 AF189723 AF225981 AK304175 BC028139 NM_001199185 NM_014382 AF181120 AF181121 AK314342 NM_001001486 NM_001001487 AY268374 AY268375	207245	+	AM774225|COL6A6|131873|collagen, type VI, alpha 6##NM_001102608|COL6A6|131873|collagen, type VI, alpha 6##EU085556|COL6A5|256076|collagen, type VI, alpha 5##NM_153264|COL6A5|256076|collagen, type VI, alpha 5##AM906078|COL6A5|256076|collagen, type VI, alpha 5##BC127105|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC127106|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##AK314219|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC110318|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC009899|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC017332|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##BC057239|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_014602|PIK3R4|30849|phosphoinositide-3-kinase, regulatory subunit 4##NM_001199180|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199181|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199182|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK296470|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AB037768|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199179|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001485|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199183|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199184|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF189723|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF225981|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK304175|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##BC028139|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001199185|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_014382|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181120|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AF181121|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AK314342|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001486|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##NM_001001487|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268374|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1##AY268375|ATP2C1|27032|ATPase, Ca++ transporting, type 2C, member 1	0.999825	0.0	denovo_WM_7:23:0.849
chr3	75286675	75286778	reg1012170.p2	4.531	+	AB384611 BC150608 NM_020872	-716424	-	AB384112 BC014432 BC150623 AB029018 BC152417 NM_015009 TSC_hg19_v1_chr3_-_73674093	-1612688	-	BC051316 BC064501 NM_018029	-2175917	+	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	197423	-	AK000525 NM_001124759	426757	+	BC111371 TSC_hg19_v1_chr3_+_75721431 BC039495	434760	+	BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC014432|PDZRN3|23024|PDZ domain containing ring finger 3##BC150623|PDZRN3|23024|PDZ domain containing ring finger 3##AB029018|PDZRN3|23024|PDZ domain containing ring finger 3##BC152417|PDZRN3|23024|PDZ domain containing ring finger 3##NM_015009|PDZRN3|23024|PDZ domain containing ring finger 3##BC051316|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC064501|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##NM_018029|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##AK000525|FLJ20518|647476|FSHD region gene 2 family, member C pseudogene##NM_001124759|FRG2C|100288801|FSHD region gene 2 family, member C##BC111371|LOC401074|401074|uncharacterized LOC401074##BC039495|LOC401074|401074|uncharacterized LOC401074	0.925413	0.0	denovo_WM_7:-52:0.686
chr6	157985122	157985202	reg1010673.p2	4.531	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-182623	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-239945	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-240578	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	259127	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	259212	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	417725	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chr1	156196018	156196129	reg1007070.p2	4.530	+	TSC_hg19_v1_chr1_+_156182797 NM_001199653 NM_001199654 NM_001199661 NM_001199662 NM_001199663 NM_001199664 NM_007221 AK124646 AK307287 AK022523 AK289490 AK290260 AK310694 BC033656 BC065031 AB464036 CU688008 DQ890582 DQ893741 EU832507 EU832588 AL080101 BC056417 AF141310 BC050735	-13279	+	TSC_hg19_v1_chr1_+_156163911 AB007915 BC039854	-32155	+	TSC_hg19_v1_chr1_+_156163907 AK074912 AK299747 AK307968 AK309678 AK309690 BC008843 AK075002 AK294524 AK293778	-32181	+	BC113432 BC113434 NM_199173 X51699 X53698 HQ258037	15911	+	AK294143 BC058509 NM_198406 AF455047 AF455045 AY424284 TSC_hg19_v1_chr1_-_156217848 AK095197 NM_024897 AK095143 AF455046 AK054682 AK094346 AK316034 AK295915 AK295916	21717	-	AY336728 AB384108 AY168922 AB085691 TSC_hg19_v1_chr1_-_156252597 AK092183 AX747396	56462	-	NM_001199653|PMF1|11243|polyamine-modulated factor 1##NM_001199654|PMF1|11243|polyamine-modulated factor 1##NM_001199661|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199662|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199663|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199664|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_007221|PMF1|11243|polyamine-modulated factor 1##AK124646|PMF1|11243|polyamine-modulated factor 1##AK307287|PMF1|11243|polyamine-modulated factor 1##AK022523|PMF1|11243|polyamine-modulated factor 1##AK289490|PMF1|11243|polyamine-modulated factor 1##AK290260|PMF1|11243|polyamine-modulated factor 1##AK310694|PMF1|11243|polyamine-modulated factor 1##BC033656|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##BC065031|PMF1|11243|polyamine-modulated factor 1##DQ890582|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##DQ893741|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##EU832507|PMF1|11243|polyamine-modulated factor 1##EU832588|PMF1|11243|polyamine-modulated factor 1##AL080101|PMF1|11243|polyamine-modulated factor 1##BC056417|PMF1|11243|polyamine-modulated factor 1##AF141310|PMF1|11243|polyamine-modulated factor 1##BC050735|PMF1|11243|polyamine-modulated factor 1##AB007915|SLC25A44|9673|solute carrier family 25, member 44##BC039854|SLC25A44|9673|solute carrier family 25, member 44##AK074912|SLC25A44|9673|solute carrier family 25, member 44##AK299747|SLC25A44|9673|solute carrier family 25, member 44##AK307968|SLC25A44|9673|solute carrier family 25, member 44##AK309678|SLC25A44|9673|solute carrier family 25, member 44##AK309690|SLC25A44|9673|solute carrier family 25, member 44##BC008843|SLC25A44|9673|solute carrier family 25, member 44##AK075002|SLC25A44|9673|solute carrier family 25, member 44##AK294524|SLC25A44|9673|solute carrier family 25, member 44##BC113432|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##BC113434|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##NM_199173|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##X51699|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##X53698|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##HQ258037|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##AK294143|PAQR6|79957|progestin and adipoQ receptor family member VI##BC058509|PAQR6|79957|progestin and adipoQ receptor family member VI##NM_198406|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455047|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455045|PAQR6|79957|progestin and adipoQ receptor family member VI##AY424284|PAQR6|79957|progestin and adipoQ receptor family member VI##AK095197|PAQR6|79957|progestin and adipoQ receptor family member VI##NM_024897|PAQR6|79957|progestin and adipoQ receptor family member VI##AK095143|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455046|PAQR6|79957|progestin and adipoQ receptor family member VI##AK054682|PAQR6|79957|progestin and adipoQ receptor family member VI##AK094346|PAQR6|79957|progestin and adipoQ receptor family member VI##AK316034|PAQR6|79957|progestin and adipoQ receptor family member VI##AK295915|PAQR6|79957|progestin and adipoQ receptor family member VI##AK295916|PAQR6|79957|progestin and adipoQ receptor family member VI##AY336728|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY168922|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB085691|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK092183|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.041033	0.0	
chr1	174926683	174926788	reg1009838.p1	4.530	+	NM_001035230 BC012094	-82066	+	NM_001243763 AL049701	-83176	+	AB007940 NM_001243765	-157701	+	AK316355 NM_001243764 AK316219 AK298711	7186	+	NM_001007214 AK093425 AX748118	41848	+	TSC_hg19_v1_chr1_+_174968845 NM_014412	42132	+	NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##AB007940|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243765|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001007214|CACYBP|27101|calcyclin binding protein##AK093425|CACYBP|27101|calcyclin binding protein##NM_014412|CACYBP|27101|calcyclin binding protein	0.20131	0.0	
chr17	66221265	66221438	reg1014482.p1	4.530	+	TSC_hg19_v1_chr17_+_66097706 BC045718	-123653	+	TSC_hg19_v1_chr17_+_66031889 BC034443	-189463	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	-189511	+	NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_016627 TSC_hg19_v1_chr17_+_66244216 BC056271 BC050709	22829	+	TSC_hg19_v1_chr17_+_66244233 AF208856	22892	+	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	33983	+	BC045718|LOC100499466|100499466|uncharacterized LOC100499466##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##NM_001033569|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033570|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033571|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033572|AMZ2|51321|archaelysin family metallopeptidase 2##NM_001033574|AMZ2|51321|archaelysin family metallopeptidase 2##NM_016627|AMZ2|51321|archaelysin family metallopeptidase 2##BC056271|AMZ2|51321|archaelysin family metallopeptidase 2##BC050709|AMZ2|51321|archaelysin family metallopeptidase 2##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G	0.85725	0.0	denovo_WM_7:-10:0.423	denovo_WM_7:-11:0.273
chr2	97006101	97006280	reg1009548.p2	4.530	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-4654	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-4714	+	NM_178495 NM_001163524 BC034503	-14242	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	196295	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	297829	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	297877	-	BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	0.996201	0.0	
chr8	103428122	103428283	reg1011899.p1	4.530	+	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	-3291	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-177029	-	NM_001040630	-291068	-	NM_024410 AK315276 BC104456 BC104457	135659	+	BC011538 NM_001032282 S81439	237890	-	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	239730	-	AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001040630|NCALD|83988|neurocalcin delta##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10	0.993575	0.0	
chr16	21371704	21371847	reg1010202.p2	4.529	+	BX648477 NM_001014444 NM_001888	-57388	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-82127	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-82182	-	BC036263 NM_130464	64882	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	159977	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	239115	+	BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9	0.0	0.0	
chr5	143353855	143354035	reg1013559.p2	4.529	+	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	-162187	+	NM_001018074 NM_001018075 NM_001018077	-538869	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-569779	-	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	196190	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	196231	-	BC014253 BX647859 CR749463 TSC_hg19_v1_chr5_-_143550217 NM_001024947 NM_030799	196301	-	AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5##BC014253|YIPF5|81555|Yip1 domain family, member 5##BX647859|YIPF5|81555|Yip1 domain family, member 5##CR749463|YIPF5|81555|Yip1 domain family, member 5##NM_001024947|YIPF5|81555|Yip1 domain family, member 5##NM_030799|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr6	20791574	20791726	reg1012986.p1	4.529	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-256927	+	CR749285 NM_001243076	-387617	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-389547	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	802722	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	875009	+	BC015850 NM_000948	1506079	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.0	
chr12	11706779	11706955	reg1008570.p1	4.528	+	BC044827 NM_006248	-158376	-	BC044827 K03205 K03206 BC141917 K03204 NM_005039 NM_199353 NM_199354 AX772842	-198351	-	BC130386 BC035362 K03207 NM_002723 BC128191	-243507	-	TSC_hg19_v1_chr12_+_11802659 AK289441	95806	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	95907	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	96119	+	BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_006248|PRB2|653247|proline-rich protein BstNI subfamily 2##BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##K03205|PRB1|5542|proline-rich protein BstNI subfamily 1##K03206|PRB1|5542|proline-rich protein BstNI subfamily 1##BC141917|PRB1|5542|proline-rich protein BstNI subfamily 1##K03204|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_005039|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199353|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199354|PRB1|5542|proline-rich protein BstNI subfamily 1##BC130386|PRB4|5545|proline-rich protein BstNI subfamily 4##BC035362|PRB4|5545|proline-rich protein BstNI subfamily 4##K03207|PRB4|5545|proline-rich protein BstNI subfamily 4##NM_002723|PRB4|5545|proline-rich protein BstNI subfamily 4##BC128191|PRB4|5545|proline-rich protein BstNI subfamily 4##AK289441|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6	0.995464	0.0	denovo_WM_7:-4:0.324	denovo_WM_7:-5:0.324	denovo_WM_7:-6:0.324
chr12	12598337	12598446	reg1008441.p1	4.528	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-88226	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-95219	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-178549	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	117009	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	166404	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	166492	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	1.99865	0.0	
chr2	232506267	232506405	reg1012479.p1	4.528	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-48719	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-111182	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-127254	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	66898	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	66996	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	139589	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	3.27974	0.0	denovo_WM_7:69:0.330	denovo_WM_7:70:0.248	denovo_WM_7:104:0.249	denovo_WM_7:105:0.332	denovo_WM_7:-106:0.236
chr3	28276083	28276213	reg1007827.p2	4.528	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-511947	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-512355	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-750218	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	6950	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	114234	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	114413	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.020662	0.0	
chr9	116818254	116818361	reg1013072.p1	4.528	+	TSC_hg19_v1_chr9_+_116638585 BC036039 NM_133374 BC136287 BC143826 AK126896 BC053892	-179708	+	TSC_hg19_v1_chr9_+_116356408 BC018072 BC019039 CU676160	-461826	+	AF490838 NM_144489 AK054584	-462097	+	TSC_hg19_v1_chr9_-_116840540 CU692002 AB463406 X04494	22193	-	TSC_hg19_v1_chr9_-_116840546 AY544123	22240	-	TSC_hg19_v1_chr9_-_116840581 X04225 AK290837	22262	-	BC036039|ZNF618|114991|zinc finger protein 618##NM_133374|ZNF618|114991|zinc finger protein 618##BC136287|ZNF618|114991|zinc finger protein 618##BC143826|ZNF618|114991|zinc finger protein 618##AK126896|ZNF618|114991|zinc finger protein 618##BC053892|ZNF618|114991|zinc finger protein 618##BC018072|RGS3|5998|regulator of G-protein signaling 3##BC019039|RGS3|5998|regulator of G-protein signaling 3##AF490838|RGS3|5998|regulator of G-protein signaling 3##NM_144489|RGS3|5998|regulator of G-protein signaling 3##AK054584|RGS3|5998|regulator of G-protein signaling 3##X04494|AMBP|259|alpha-1-microglobulin/bikunin precursor##AY544123|AMBP|259|alpha-1-microglobulin/bikunin precursor##X04225|AMBP|259|alpha-1-microglobulin/bikunin precursor##AK290837|AMBP|259|alpha-1-microglobulin/bikunin precursor	0.999509	0.0	denovo_WM_7:-45:0.964
chr11	118161759	118161883	reg1009728.p2	4.527	+	TSC_hg19_v1_chr11_-_118135197 NM_005797 NM_144765	-26598	-	AF030455 AY359061 TSC_hg19_v1_chr11_-_118135010 AF304447 AF275945 BC017774	-26802	-	TSC_hg19_v1_chr11_-_118134957 AK290326	-26855	-	NM_000733 AK301255 AK311641 AK292612 BC033578 BC049847 X03884 CU690624	13659	+	JN392069 BC039035 AK311971 TSC_hg19_v1_chr11_-_118213368 BC070321 NM_000732 NM_001040651	51568	-	AK299997 NM_000073 AK313966 AK315895 AK310622 BC069685 X04145 X60492 AK223314 AK310578 BC113830	53263	+	NM_005797|MPZL2|10205|myelin protein zero-like 2##NM_144765|MPZL2|10205|myelin protein zero-like 2##AF030455|MPZL2|10205|myelin protein zero-like 2##AY359061|MPZL2|10205|myelin protein zero-like 2##AF304447|MPZL2|10205|myelin protein zero-like 2##AF275945|MPZL2|10205|myelin protein zero-like 2##BC017774|MPZL2|10205|myelin protein zero-like 2##AK290326|MPZL2|10205|myelin protein zero-like 2##NM_000733|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##AK301255|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##AK311641|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##AK292612|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##BC049847|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##X03884|CD3E|916|CD3e molecule, epsilon (CD3-TCR complex)##BC039035|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##AK311971|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##BC070321|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##NM_000732|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##NM_001040651|CD3D|915|CD3d molecule, delta (CD3-TCR complex)##NM_000073|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK313966|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK315895|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK310622|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##BC069685|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##X04145|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK223314|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##AK310578|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)##BC113830|CD3G|917|CD3g molecule, gamma (CD3-TCR complex)	0.0	0.230985	CTCF.p2:18:0.231
chr16	68753869	68754049	reg1000149.p2	4.527	+	X63629 TSC_hg19_v1_chr16_+_68679239 AB527800 EU832319 EU832404	-74705	+	TSC_hg19_v1_chr16_+_68679201 AK296968 AK312554 AK225396	-74754	+	NM_001793	-75809	+	AK312551 TSC_hg19_v1_chr16_+_68771194 AK297913 EU709494 NM_004360 BC141838 BC146662 L08599	17242	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	17260	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	17286	+	X63629|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832319|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832404|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK296968|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312554|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK225396|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##NM_001793|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312551|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK297913|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##EU709494|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##NM_004360|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC141838|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC146662|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##L08599|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)	0.0	0.0	
chr2	201577808	201577952	reg1007585.p1	4.527	+	AK297930 AK307738 TSC_hg19_v1_chr2_+_201474048	-103883	+	AB046692 NM_001159 TSC_hg19_v1_chr2_+_201450748 BC117179 BC117181	-127096	+	TSC_hg19_v1_chr2_+_201450590 AK301052	-127293	+	TSC_hg19_v1_chr2_+_201676291 NM_001207067 NM_014670 AL833518	98406	+	TSC_hg19_v1_chr2_+_201676632 Z70221 AK096489	98734	+	D13630 TSC_hg19_v1_chr2_+_201676645 BC001804	98766	+	AK297930|AOX1|316|aldehyde oxidase 1##AK307738|AOX1|316|aldehyde oxidase 1##AB046692|AOX1|316|aldehyde oxidase 1##NM_001159|AOX1|316|aldehyde oxidase 1##BC117179|AOX1|316|aldehyde oxidase 1##BC117181|AOX1|316|aldehyde oxidase 1##AK301052|AOX1|316|aldehyde oxidase 1##NM_001207067|BZW1|9689|basic leucine zipper and W2 domains 1##NM_014670|BZW1|9689|basic leucine zipper and W2 domains 1##AL833518|BZW1|9689|basic leucine zipper and W2 domains 1##Z70221|BZW1|9689|basic leucine zipper and W2 domains 1##AK096489|BZW1|9689|basic leucine zipper and W2 domains 1##D13630|BZW1|9689|basic leucine zipper and W2 domains 1##BC001804|BZW1|9689|basic leucine zipper and W2 domains 1	0.0	0.037358	
chr2	61199395	61199497	reg1001332.p2	4.527	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	-90659	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	-90709	+	TSC_hg19_v1_chr2_+_61108702 AK303926	-90741	+	TSC_hg19_v1_chr2_-_61244326 AK291729 BC065197	44871	-	AK311426 NM_002618 TSC_hg19_v1_chr2_+_61244828	45323	+	TSC_hg19_v1_chr2_+_61244858 AK315244 AB022192 AF048755 BC067090 BC020547 BC040953 BC048804 BC035584 AB528913 CU688242 U71374	45428	+	BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK291729|PUS10|150962|pseudouridylate synthase 10##NM_002618|PEX13|5194|peroxisomal biogenesis factor 13##AK315244|PEX13|5194|peroxisomal biogenesis factor 13##AB022192|PEX13|5194|peroxisomal biogenesis factor 13##AF048755|PEX13|5194|peroxisomal biogenesis factor 13##BC067090|PEX13|5194|peroxisomal biogenesis factor 13##U71374|PEX13|5194|peroxisomal biogenesis factor 13	0.05579	0.0	
chr3	183271128	183271230	reg1001620.p4	4.527	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-105749	+	NM_015078 BC064632 AK124500 AK310962	-125240	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-299573	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	2273	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	82221	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	144443	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	0.0	0.0	
chr3	45701689	45701869	reg1011441.p1	4.527	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	-65508	+	TSC_hg19_v1_chr3_+_45635397 M80651	-66194	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-271715	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	28954	+	TSC_hg19_v1_chr3_+_45730846 AK291142	29078	+	TSC_hg19_v1_chr3_+_45730887 AB020658 AK301248	29110	+	BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##M80651|LIMD1|8994|LIM domains containing 1##AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK291142|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AB020658|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##AK301248|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	0.0	0.104306	
chr7	66379903	66380071	reg1001832.p1	4.527	+	TSC_hg19_v1_chr7_+_66205719 AJ250042 AK223329 AK290678	-174257	+	TSC_hg19_v1_chr7_+_66205692 BC015330	-174293	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	-174343	+	TSC_hg19_v1_chr7_+_66386215 AK222774 NM_017994 BC012562 AK000961 BC008675	6189	+	TSC_hg19_v1_chr7_+_66386228 BC041764	6244	+	TSC_hg19_v1_chr7_+_66386238 BC010519	6284	+	AJ250042|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK223329|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK290678|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK222774|C7orf42|55069|chromosome 7 open reading frame 42##NM_017994|C7orf42|55069|chromosome 7 open reading frame 42##BC012562|C7orf42|55069|chromosome 7 open reading frame 42##AK000961|C7orf42|55069|chromosome 7 open reading frame 42##BC008675|C7orf42|55069|chromosome 7 open reading frame 42##BC041764|C7orf42|55069|chromosome 7 open reading frame 42##BC010519|C7orf42|55069|chromosome 7 open reading frame 42	1.928085	0.0	denovo_WM_7:40:0.953	denovo_WM_7:55:0.952
chr8	68305301	68305416	reg1013425.p1	4.527	+	BC030256 TSC_hg19_v1_chr8_+_68256207	-49203	+	NM_006421 TSC_hg19_v1_chr8_-_68256017	-49393	-	TSC_hg19_v1_chr8_+_67976626 AM156947 BX649147 NM_024790 BC029445 AK096205 AB527449 AK127108	-328722	+	AF221594 AY044833 BC033684 NM_020361	353240	-	TSC_hg19_v1_chr8_+_68864347 BC068571 BC036055 AJ437636	558994	+	TSC_hg19_v1_chr8_+_68864598 AY508996 AY508997 NM_024870 NM_025170	559237	+	NM_006421|ARFGEF1|10565|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)##AM156947|CSPP1|79848|centrosome and spindle pole associated protein 1##BX649147|CSPP1|79848|centrosome and spindle pole associated protein 1##NM_024790|CSPP1|79848|centrosome and spindle pole associated protein 1##BC029445|CSPP1|79848|centrosome and spindle pole associated protein 1##AK096205|CSPP1|79848|centrosome and spindle pole associated protein 1##AK127108|CSPP1|79848|centrosome and spindle pole associated protein 1##AF221594|CPA6|57094|carboxypeptidase A6##AY044833|CPA6|57094|carboxypeptidase A6##BC033684|CPA6|57094|carboxypeptidase A6##NM_020361|CPA6|57094|carboxypeptidase A6##AJ437636|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508996|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508997|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_024870|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_025170|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	0.0	0.0	
chr8	81894271	81894393	reg1000792.p2	4.527	+	AK131274 NM_001033723	-107317	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-495848	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-810562	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	129982	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	298441	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	465337	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.0	0.0	
chrX	96090872	96090971	reg1002371.p1	4.527	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	-150967	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	-151170	+	NM_001171109 NM_001171110 NM_001171111 NM_173698	-3161910	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	48049	+	EF676096 NM_001105243 NM_001184880 NM_020766 TSC_hg19_v1_chrX_-_99665272	3574352	-	NM_022144 AF191770 BC034030 AF291656 AF234259 AY358706 AB055421 AB590911 CU689814	3748980	+	BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_001171109|FAM133A|286499|family with sequence similarity 133, member A##NM_001171110|FAM133A|286499|family with sequence similarity 133, member A##NM_001171111|FAM133A|286499|family with sequence similarity 133, member A##NM_173698|FAM133A|286499|family with sequence similarity 133, member A##NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa##EF676096|PCDH19|57526|protocadherin 19##NM_001105243|PCDH19|57526|protocadherin 19##NM_001184880|PCDH19|57526|protocadherin 19##NM_020766|PCDH19|57526|protocadherin 19##NM_022144|TNMD|64102|tenomodulin##AF191770|TNMD|64102|tenomodulin##BC034030|TNMD|64102|tenomodulin##AF291656|TNMD|64102|tenomodulin##AF234259|TNMD|64102|tenomodulin##AY358706|TNMD|64102|tenomodulin##AB055421|TNMD|64102|tenomodulin	0.045776	0.0	
chr1	182393676	182393813	reg1011396.p2	4.526	+	AJ515384 NM_172000	-23994	-	TSC_hg19_v1_chr1_-_182361366 AK122784 NM_001033044 NM_002065	-32404	-	TSC_hg19_v1_chr1_-_182360928 AY947343 BC018992 BC011700 X59834 BC010037 BC011852 Y00387 BC051726 BX537384	-32809	-	NM_001137669 AK302768 BC142944 AL136902	25529	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	164639	-	CU675308 TSC_hg19_v1_chr1_+_182569465	175702	+	AJ515384|TEDDM1|127670|transmembrane epididymal protein 1##NM_172000|TEDDM1|127670|transmembrane epididymal protein 1##AK122784|GLUL|2752|glutamate-ammonia ligase##NM_001033044|GLUL|2752|glutamate-ammonia ligase##NM_002065|GLUL|2752|glutamate-ammonia ligase##AY947343|GLUL|2752|glutamate-ammonia ligase##BC018992|GLUL|2752|glutamate-ammonia ligase##BC011700|GLUL|2752|glutamate-ammonia ligase##X59834|GLUL|2752|glutamate-ammonia ligase##BC010037|GLUL|2752|glutamate-ammonia ligase##BC011852|GLUL|2752|glutamate-ammonia ligase##Y00387|GLUL|2752|glutamate-ammonia ligase##BC051726|GLUL|2752|glutamate-ammonia ligase##BX537384|GLUL|2752|glutamate-ammonia ligase##NM_001137669|RGSL1|353299|regulator of G-protein signaling like 1##AK302768|RGSL1|353299|regulator of G-protein signaling like 1##BC142944|RGSL1|353299|regulator of G-protein signaling like 1##AL136902|RGSL1|353299|regulator of G-protein signaling like 1##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	1.421581	0.0	denovo_WM_7:-86:0.314
chr12	88429076	88429232	reg1012136.p1	4.526	+	AL833338 BC062424 AK093140 AX747948 NM_152589	-5994	-	BC035851 NM_013244	-1196497	-	AK312066 NM_006183 BC010918 AF157682 U91618 AB587429 CR541936 CU679849	-2161028	+	TSC_hg19_v1_chr12_+_88429312 AK095477 NM_001009894 CR936776 AK311222 BC058014 BX640968 BX537868 BX648026 AK311153 BC035136 BC092422 AB590923 AM392924 AL137488	232	+	BC043398 TSC_hg19_v1_chr12_-_88535871 AK023677 DQ109808 NM_025114	106715	-	TSC_hg19_v1_chr12_+_88536083 AK290436 AK302755 AK310375 AK310393 NM_181783 CR749309 BX538169 CR749244 CR933632 AJ697717 BC117177 BC117175	106994	+	AL833338|C12orf50|160419|chromosome 12 open reading frame 50##BC062424|C12orf50|160419|chromosome 12 open reading frame 50##AK093140|C12orf50|160419|chromosome 12 open reading frame 50##NM_152589|C12orf50|160419|chromosome 12 open reading frame 50##BC035851|MGAT4C|25834|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)##NM_013244|MGAT4C|25834|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)##AK312066|NTS|4922|neurotensin##NM_006183|NTS|4922|neurotensin##BC010918|NTS|4922|neurotensin##AF157682|NTS|4922|neurotensin##U91618|NTS|4922|neurotensin##CR541936|NTS|4922|neurotensin##AK095477|C12orf29|91298|chromosome 12 open reading frame 29##NM_001009894|C12orf29|91298|chromosome 12 open reading frame 29##CR936776|C12orf29|91298|chromosome 12 open reading frame 29##AK311222|C12orf29|91298|chromosome 12 open reading frame 29##BC058014|C12orf29|91298|chromosome 12 open reading frame 29##BX640968|C12orf29|91298|chromosome 12 open reading frame 29##BX537868|C12orf29|91298|chromosome 12 open reading frame 29##BX648026|C12orf29|91298|chromosome 12 open reading frame 29##AK311153|C12orf29|91298|chromosome 12 open reading frame 29##BC035136|C12orf29|91298|chromosome 12 open reading frame 29##BC092422|C12orf29|91298|chromosome 12 open reading frame 29##AM392924|C12orf29|91298|chromosome 12 open reading frame 29##AL137488|C12orf29|91298|chromosome 12 open reading frame 29##BC043398|CEP290|80184|centrosomal protein 290kDa##AK023677|CEP290|80184|centrosomal protein 290kDa##DQ109808|CEP290|80184|centrosomal protein 290kDa##NM_025114|CEP290|80184|centrosomal protein 290kDa##AK290436|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK302755|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310375|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310393|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##NM_181783|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749309|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BX538169|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749244|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR933632|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AJ697717|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117177|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117175|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3	0.998616	0.0	denovo_WM_7:-22:0.435	denovo_WM_7:-23:0.435
chr3	9467808	9467960	reg1006843.p2	4.526	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-28310	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	-28523	+	AK093640 TSC_hg19_v1_chr3_-_9439124 AL110136	-28737	-	TSC_hg19_v1_chr3_+_9476522 AB384632	8632	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	127579	-	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	223258	+	AK092046|SETD5|55209|SET domain containing 5##NM_001080517|SETD5|55209|SET domain containing 5##AK093640|LOC440944|440944|uncharacterized LOC440944##AL110136|LOC440944|440944|uncharacterized LOC440944##BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14	1.99457	0.0	
chr5	79514518	79514630	reg1009570.p1	4.526	+	BC050456 TSC_hg19_v1_chr5_+_79331170 NM_003248 AK313587 Z19585	-183410	+	TSC_hg19_v1_chr5_-_79287069 AK091375 AX746944 BX538064 BC150295 AK296864 BX647596 NM_001010891 NM_001167741	-227616	-	TSC_hg19_v1_chr5_+_78985662 BC020856 NM_153610 AL832376	-528902	+	BC101280 BC101281 BC101282 BC101283 TSC_hg19_v1_chr5_-_79551866 AF498273 AK297467 NM_001174071 NM_001174072 NM_178276	37311	-	NM_032567 AK098575 AK314007 AF333098 BC033798	101241	+	TSC_hg19_v1_chr5_+_79703879 NM_001105251 NM_014733 BC032227 BX537424 CR933621 AB002303 BC030808	189279	+	BC050456|THBS4|7060|thrombospondin 4##NM_003248|THBS4|7060|thrombospondin 4##AK313587|THBS4|7060|thrombospondin 4##Z19585|THBS4|7060|thrombospondin 4##AK091375|MTX3|345778|metaxin 3##BX538064|MTX3|345778|metaxin 3##BC150295|MTX3|345778|metaxin 3##AK296864|MTX3|345778|metaxin 3##BX647596|MTX3|345778|metaxin 3##NM_001010891|MTX3|345778|metaxin 3##NM_001167741|MTX3|345778|metaxin 3##BC020856|CMYA5|202333|cardiomyopathy associated 5##NM_153610|CMYA5|202333|cardiomyopathy associated 5##AL832376|CMYA5|202333|cardiomyopathy associated 5##BC101280|SERINC5|256987|serine incorporator 5##BC101281|SERINC5|256987|serine incorporator 5##BC101282|SERINC5|256987|serine incorporator 5##BC101283|SERINC5|256987|serine incorporator 5##AF498273|SERINC5|256987|serine incorporator 5##AK297467|SERINC5|256987|serine incorporator 5##NM_001174071|SERINC5|256987|serine incorporator 5##NM_001174072|SERINC5|256987|serine incorporator 5##NM_178276|SERINC5|256987|serine incorporator 5##NM_032567|SPZ1|84654|spermatogenic leucine zipper 1##AK098575|SPZ1|84654|spermatogenic leucine zipper 1##AK314007|SPZ1|84654|spermatogenic leucine zipper 1##AF333098|SPZ1|84654|spermatogenic leucine zipper 1##BC033798|SPZ1|84654|spermatogenic leucine zipper 1##NM_001105251|ZFYVE16|9765|zinc finger, FYVE domain containing 16##NM_014733|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC032227|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BX537424|ZFYVE16|9765|zinc finger, FYVE domain containing 16##CR933621|ZFYVE16|9765|zinc finger, FYVE domain containing 16##AB002303|ZFYVE16|9765|zinc finger, FYVE domain containing 16##BC030808|ZFYVE16|9765|zinc finger, FYVE domain containing 16	0.99834	0.0	denovo_WM_7:-72:0.457	denovo_WM_7:-73:0.457
chr6	138799018	138799129	reg1007923.p1	4.526	+	BC010290 TSC_hg19_v1_chr6_+_138725477 BC008205 BC093037 AF411610	-73528	+	TSC_hg19_v1_chr6_+_138725355 NM_014320 AF117616 BC016806 BC016807 AK057928 AY427823	-73688	+	BC069109 NM_021635 AF189269 AF189270	-259447	-	AK307584 NM_001144060 TSC_hg19_v1_chr6_-_138820579	21505	-	TSC_hg19_v1_chr6_-_138820580 AK092744 AX747703	21543	-	TSC_hg19_v1_chr6_-_138893682 NM_020464	94635	-	BC010290|HEBP2|23593|heme binding protein 2##BC008205|HEBP2|23593|heme binding protein 2##BC093037|HEBP2|23593|heme binding protein 2##AF411610|HEBP2|23593|heme binding protein 2##NM_014320|HEBP2|23593|heme binding protein 2##AF117616|HEBP2|23593|heme binding protein 2##BC016806|HEBP2|23593|heme binding protein 2##BC016807|HEBP2|23593|heme binding protein 2##AK057928|HEBP2|23593|heme binding protein 2##AY427823|HEBP2|23593|heme binding protein 2##BC069109|PBOV1|59351|prostate and breast cancer overexpressed 1##NM_021635|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189269|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189270|PBOV1|59351|prostate and breast cancer overexpressed 1##AK307584|NHSL1|57224|NHS-like 1##NM_001144060|NHSL1|57224|NHS-like 1##NM_020464|NHSL1|57224|NHS-like 1	1.979596	0.0	
chr8	27237968	27238109	reg1010788.p1	4.526	+	L49207 TSC_hg19_v1_chr8_+_27183068 NM_173175 AB209085	-54961	+	TSC_hg19_v1_chr8_+_27183049 BC042599	-54986	+	NM_173176 TSC_hg19_v1_chr8_+_27183022	-55021	+	AK314787 U62431 NM_000742	98733	-	TSC_hg19_v1_chr8_+_27348693 AK310507 NM_001979 BC011628 AK096089 AK096770 AF233334 AF233335 AF233336 BC007708 BC013874 AK303904 AK308041 AK294065 AB590180 DQ892749 DQ895995 BT006885	110620	+	BC039442 M64722 TSC_hg19_v1_chr8_-_27472218 AY513288 BC010514 BC029972 AK301324 AK313870 AK093399	234167	-	L49207|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##NM_173175|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##AB209085|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##BC042599|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##NM_173176|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##AK314787|CHRNA2|1135|cholinergic receptor, nicotinic, alpha 2 (neuronal)##U62431|CHRNA2|1135|cholinergic receptor, nicotinic, alpha 2 (neuronal)##NM_000742|CHRNA2|1135|cholinergic receptor, nicotinic, alpha 2 (neuronal)##AK310507|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##NM_001979|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BC011628|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK096089|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK096770|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AF233334|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AF233335|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AF233336|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BC007708|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BC013874|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK303904|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK308041|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK294065|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##DQ892749|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##DQ895995|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BT006885|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##M64722|CLU|1191|clusterin##AY513288|CLU|1191|clusterin##BC010514|CLU|1191|clusterin##BC029972|CLU|1191|clusterin##AK301324|CLU|1191|clusterin##AK313870|CLU|1191|clusterin##AK093399|CLU|1191|clusterin	0.967791	0.0	denovo_WM_7:21:0.941
chr9	135134666	135134782	reg1011914.p1	4.526	+	AB058760 NM_032536 TSC_hg19_v1_chr9_+_135037469	-97321	+	TSC_hg19_v1_chr9_+_135037083 AY358165	-97633	+	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	-179474	-	TSC_hg19_v1_chr9_-_135230312 AK125448	95506	-	TSC_hg19_v1_chr9_-_135230352 AK307608 BX537849	95624	-	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	95683	-	AB058760|NTNG2|84628|netrin G2##NM_032536|NTNG2|84628|netrin G2##AY358165|NTNG2|84628|netrin G2##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AK125448|SETX|23064|senataxin##AK307608|SETX|23064|senataxin##BX537849|SETX|23064|senataxin##BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin	0.0	0.0	
chr10	121467761	121467938	reg1005911.p1	4.525	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-56713	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-56774	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-56796	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	17689	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	17765	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	17856	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	1.957212	0.0	denovo_WM_7:-18:0.495	denovo_WM_7:-22:0.270	denovo_WM_7:-33:0.238	denovo_WM_7:-34:0.285	denovo_WM_7:-37:0.328
chr11	111852892	111853018	reg1011864.p1	4.525	+	TSC_hg19_v1_chr11_+_111848069 NM_033425 AK289807 BC033034 AB051522	-4889	+	TSC_hg19_v1_chr11_+_111808066 BC035509 BC064479 BC128600	-44872	+	TSC_hg19_v1_chr11_+_111807932 DQ642016 NM_001037954	-45047	+	AK057299 NM_001931	42582	+	TSC_hg19_v1_chr11_+_111896166 AK296274 AK303930 AK297103 AF317200 AK223596 AL832703 BC039084 DQ892447 DQ895658 CU691660 Y00978 AK299562	43253	+	AK300496 NM_001082619 NM_138789	91870	-	NM_033425|DIXDC1|85458|DIX domain containing 1##AK289807|DIXDC1|85458|DIX domain containing 1##BC033034|DIXDC1|85458|DIX domain containing 1##AB051522|DIXDC1|85458|DIX domain containing 1##BC035509|DIXDC1|85458|DIX domain containing 1##BC064479|DIXDC1|85458|DIX domain containing 1##BC128600|DIXDC1|85458|DIX domain containing 1##DQ642016|DIXDC1|85458|DIX domain containing 1##NM_001037954|DIXDC1|85458|DIX domain containing 1##AK057299|DLAT|1737|dihydrolipoamide S-acetyltransferase##NM_001931|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK296274|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK303930|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK297103|DLAT|1737|dihydrolipoamide S-acetyltransferase##AF317200|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK223596|DLAT|1737|dihydrolipoamide S-acetyltransferase##AL832703|DLAT|1737|dihydrolipoamide S-acetyltransferase##BC039084|DLAT|1737|dihydrolipoamide S-acetyltransferase##DQ892447|DLAT|1737|dihydrolipoamide S-acetyltransferase##DQ895658|DLAT|1737|dihydrolipoamide S-acetyltransferase##Y00978|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK299562|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK300496|PIH1D2|120379|PIH1 domain containing 2##NM_001082619|PIH1D2|120379|PIH1 domain containing 2##NM_138789|PIH1D2|120379|PIH1 domain containing 2	0.0	0.069257	
chr11	66795495	66795675	reg1003480.p3	4.525	+	NM_177963 AK289672 AK289727 BC037406	-4733	+	AK315810 NM_001177880	-5396	+	AK026328 NM_001136485	-52835	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	28701	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	28755	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	91154	+	NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##AK315810|SYT12|91683|synaptotagmin XII##NM_001177880|SYT12|91683|synaptotagmin XII##AK026328|C11orf86|254439|chromosome 11 open reading frame 86##NM_001136485|C11orf86|254439|chromosome 11 open reading frame 86##NM_014578|RHOD|29984|ras homolog gene family, member D##BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A	0.0	0.0	
chr14	81951809	81951907	reg1011338.p1	4.525	+	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-87032	-	D14886 NM_201595	-264284	-	D14887 TSC_hg19_v1_chr14_-_81687285 NM_015859 BC050703	-264578	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	48290	-	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	48369	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	4044615	+	HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##D14886|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_201595|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##D14887|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_015859|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##BC050703|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.956351	0.0	denovo_WM_7:-54:0.689
chr4	57624307	57624477	reg1010659.p2	4.525	+	AF492675 NM_001145460 NM_032495 NM_139212	-76534	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	-101814	-	AB019573 AB463756 AM393649 DQ892193 EU176669 TSC_hg19_v1_chr4_-_57522247	-102235	-	CR542135 DQ895533 EU176199 TSC_hg19_v1_chr4_-_57687883 AK312222 NM_021114 X57655 BC022514 GU727622	63473	-	TSC_hg19_v1_chr4_+_57774035 NM_005612	149663	+	TSC_hg19_v1_chr4_+_57774090 BC038985 U13879 U22680	149771	+	AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##AB019573|HOPX|84525|HOP homeobox##AM393649|HOPX|84525|HOP homeobox##DQ892193|HOPX|84525|HOP homeobox##EU176669|HOPX|84525|HOP homeobox##CR542135|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##DQ895533|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##EU176199|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AK312222|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_021114|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##X57655|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##BC022514|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##GU727622|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_005612|REST|5978|RE1-silencing transcription factor##BC038985|REST|5978|RE1-silencing transcription factor##U13879|REST|5978|RE1-silencing transcription factor	0.0	0.0	
chr6	100923470	100923628	reg1012879.p1	4.525	+	NM_005068 U70212	-11999	-	AK123634 NM_001040179 NM_032503 AF347063	-481439	-	AY004253 NM_021620	-868900	+	BC125211 BC125212 BC130038 TSC_hg19_v1_chr6_-_101329178 BC050681 AK307903 AK315197	405551	-	TSC_hg19_v1_chr6_-_101329201 NM_006828 NM_022091	405667	-	TSC_hg19_v1_chr6_-_101329241 BC026066 AK299117	405694	-	NM_005068|SIM1|6492|single-minded homolog 1 (Drosophila)##U70212|SIM1|6492|single-minded homolog 1 (Drosophila)##AK123634|MCHR2|84539|melanin-concentrating hormone receptor 2##NM_001040179|MCHR2|84539|melanin-concentrating hormone receptor 2##NM_032503|MCHR2|84539|melanin-concentrating hormone receptor 2##AF347063|MCHR2|84539|melanin-concentrating hormone receptor 2##AY004253|PRDM13|59336|PR domain containing 13##NM_021620|PRDM13|59336|PR domain containing 13##BC125211|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC125212|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC130038|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC050681|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##AK307903|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##AK315197|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##NM_006828|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##NM_022091|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##BC026066|ASCC3|10973|activating signal cointegrator 1 complex subunit 3##AK299117|ASCC3|10973|activating signal cointegrator 1 complex subunit 3	0.0	0.0	
chr14	89897129	89897309	reg1001460.p2	4.524	+	TSC_hg19_v1_chr14_-_89883455 BC007506 NM_005197	-13809	-	TSC_hg19_v1_chr14_-_89878738 AB528050 CU675677 EU831970 EU832063	-18443	-	TSC_hg19_v1_chr14_+_89290970 AK315772 AK093891 AX748355 NM_144596 NM_198309 NM_198310 AK296077 AY366523 AY366524 AY373972 BC026351 BX248071 AK124675 BX161472 BC095433 AL833901 CU693230	-606226	+	TSC_hg19_v1_chr14_-_90085494 AK225967 AK308053 NM_001085471	188376	-	BC001787 BX247991 AK298930 AK094740 NM_145231	523841	-	TSC_hg19_v1_chr14_+_90422250 BC107877 NM_001008744 NM_018319	525027	+	BC007506|FOXN3|1112|forkhead box N3##NM_005197|FOXN3|1112|forkhead box N3##EU831970|FOXN3|1112|forkhead box N3##EU832063|FOXN3|1112|forkhead box N3##AK315772|TTC8|123016|tetratricopeptide repeat domain 8##AK093891|TTC8|123016|tetratricopeptide repeat domain 8##NM_144596|TTC8|123016|tetratricopeptide repeat domain 8##NM_198309|TTC8|123016|tetratricopeptide repeat domain 8##NM_198310|TTC8|123016|tetratricopeptide repeat domain 8##AK296077|TTC8|123016|tetratricopeptide repeat domain 8##AY366523|TTC8|123016|tetratricopeptide repeat domain 8##AY366524|TTC8|123016|tetratricopeptide repeat domain 8##AY373972|TTC8|123016|tetratricopeptide repeat domain 8##BC026351|TTC8|123016|tetratricopeptide repeat domain 8##BX248071|TTC8|123016|tetratricopeptide repeat domain 8##AK124675|TTC8|123016|tetratricopeptide repeat domain 8##BX161472|TTC8|123016|tetratricopeptide repeat domain 8##BC095433|TTC8|123016|tetratricopeptide repeat domain 8##AL833901|TTC8|123016|tetratricopeptide repeat domain 8##AK225967|FOXN3|1112|forkhead box N3##AK308053|FOXN3|1112|forkhead box N3##NM_001085471|FOXN3|1112|forkhead box N3##BC001787|EFCAB11|90141|EF-hand calcium binding domain 11##BX247991|EFCAB11|90141|EF-hand calcium binding domain 11##AK298930|EFCAB11|90141|EF-hand calcium binding domain 11##AK094740|EFCAB11|90141|EF-hand calcium binding domain 11##NM_145231|EFCAB11|90141|EF-hand calcium binding domain 11##BC107877|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_001008744|TDP1|55775|tyrosyl-DNA phosphodiesterase 1##NM_018319|TDP1|55775|tyrosyl-DNA phosphodiesterase 1	0.0	0.0	
chr16	70559873	70560007	reg1011256.p2	4.524	+	TSC_hg19_v1_chr16_+_70557732 D87686 BC068974	-2192	+	BC009780 TSC_hg19_v1_chr16_+_70557724	-2216	+	TSC_hg19_v1_chr16_+_70557713 NM_012426 AK291768	-2240	+	NM_001172771 NM_152456	53857	+	NM_001172772	97954	+	BC002770 TSC_hg19_v1_chr16_-_70713956	154003	-	D87686|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC068974|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##BC009780|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##NM_012426|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##AK291768|SF3B3|23450|splicing factor 3b, subunit 3, 130kDa##NM_001172771|IL34|146433|interleukin 34##NM_152456|IL34|146433|interleukin 34##NM_001172772|IL34|146433|interleukin 34##BC002770|MTSS1L|92154|metastasis suppressor 1-like	1.88926	0.0	denovo_WM_7:-49:0.287	denovo_WM_7:-51:0.211
chr17	76184115	76184234	reg1010243.p2	4.524	+	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	-751	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	-995	-	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	-19514	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	26125	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	26223	+	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	43289	+	BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235	0.987467	0.0	denovo_WM_7:72:0.818
chr2	192543646	192543810	reg1002991.p4	4.524	+	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	-866	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-433630	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-527421	-	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	168010	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	168243	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	515586	-	NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2	0.0	0.0	
chr2	36632057	36632158	reg1010273.p2	4.524	+	AB209139 NM_016441 AF167706 BC111989 BC113371 AB384861	-48705	+	TSC_hg19_v1_chr2_+_36582920 AY358371	-49145	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	-2807762	-	AF113124 BC064484 BC054043 BC089390 BC047020 BC110386 TSC_hg19_v1_chr2_-_36825294 BC037566 BC018032 AB076184 NM_001042548 NM_005102	193175	-	NM_001177969 NM_001177970 NM_001177971 NM_001177972 NM_053276 AK299426 TSC_hg19_v1_chr2_+_36923849	291739	+	TSC_hg19_v1_chr2_+_36923944 BC061519 AK056772 AK292149 AY358338 AL832679 AF063833 BC128260	291853	+	AB209139|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##NM_016441|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF167706|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC111989|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC113371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AF113124|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC064484|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC054043|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC089390|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC047020|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC110386|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC037566|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##BC018032|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##AB076184|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_001042548|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_005102|FEZ2|9637|fasciculation and elongation protein zeta 2 (zygin II)##NM_001177969|VIT|5212|vitrin##NM_001177970|VIT|5212|vitrin##NM_001177971|VIT|5212|vitrin##NM_001177972|VIT|5212|vitrin##NM_053276|VIT|5212|vitrin##AK299426|VIT|5212|vitrin##BC061519|VIT|5212|vitrin##AK056772|VIT|5212|vitrin##AK292149|VIT|5212|vitrin##AY358338|VIT|5212|vitrin##AL832679|VIT|5212|vitrin##AF063833|VIT|5212|vitrin##BC128260|VIT|5212|vitrin	0.118298	0.0	
chrX	16921955	16922093	reg1011600.p2	4.524	+	TSC_hg19_v1_chrX_-_16888462 NM_002893	-33527	-	TSC_hg19_v1_chrX_-_16888456 X72841	-33573	-	AB463219 CR541701 AK291567 TSC_hg19_v1_chrX_-_16888381 BC114500 BC114501 U35143	-33719	-	TSC_hg19_v1_chrX_+_16964847 AF010233 NM_001080975 NM_004726 AF511533 AF512951	42908	+	TSC_hg19_v1_chrX_+_17393357 AK302437	471330	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	471518	+	NM_002893|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7##CR541701|RBBP7|5931|retinoblastoma binding protein 7##AK291567|RBBP7|5931|retinoblastoma binding protein 7##BC114500|RBBP7|5931|retinoblastoma binding protein 7##BC114501|RBBP7|5931|retinoblastoma binding protein 7##U35143|RBBP7|5931|retinoblastoma binding protein 7##AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2##AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2##AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2##AK302437|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)	0.018838	0.0	
chr12	56907598	56907778	reg1013120.p1	4.523	+	AK289471 BC025661 BC036929 AK000467 AF110330 AK303772 AF223944 AK294822 BC119767 BC119768 BC059370 BC048344 NM_013267	-25648	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	-45336	+	HQ258134 BC074913 BC117474 NM_012064	-59272	-	TSC_hg19_v1_chr12_+_56915603 NM_002898 BC072679 AK308885 AK293315 AK304540 D28483 AK299580 BC027863 CU693300	8009	+	AF000422 TSC_hg19_v1_chr12_-_57006969	99228	-	AK023830 TSC_hg19_v1_chr12_-_57009380	101688	-	AK289471|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC025661|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC036929|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK000467|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF110330|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK303772|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF223944|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK294822|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119767|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119768|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC059370|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC048344|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_013267|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber##NM_002898|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC072679|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK308885|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK293315|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK304540|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##D28483|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK299580|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC027863|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AF000422|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023830|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A	0.0	0.803526	CTCF.p2:11:0.804
chr14	96132032	96132129	reg1008850.p1	4.523	+	TSC_hg19_v1_chr14_+_96001402 DQ083331	-130647	+	AB223038 TSC_hg19_v1_chr14_+_96001383	-130697	+	TSC_hg19_v1_chr14_+_96001362 BX248075 BC023528 BC047680	-130712	+	BC051000 NM_004918 AF137027 AB018563 AF110466 BC041616 AB590931 CR457087	20698	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	48387	-	AK023027 TSC_hg19_v1_chr14_+_96342762	210665	+	DQ083331|GLRX5|51218|glutaredoxin 5##AB223038|GLRX5|51218|glutaredoxin 5##BX248075|GLRX5|51218|glutaredoxin 5##BC023528|GLRX5|51218|glutaredoxin 5##BC047680|GLRX5|51218|glutaredoxin 5##BC051000|TCL1B|9623|T-cell leukemia/lymphoma 1B##NM_004918|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF137027|TCL1B|9623|T-cell leukemia/lymphoma 1B##AB018563|TCL1B|9623|T-cell leukemia/lymphoma 1B##AF110466|TCL1B|9623|T-cell leukemia/lymphoma 1B##BC041616|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR457087|TCL1B|9623|T-cell leukemia/lymphoma 1B##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##AK023027|LOC100507043|100507043|uncharacterized LOC100507043	0.995772	0.24253	CTCF.p2:11:0.243	denovo_WM_7:51:0.983
chr16	57408305	57408417	reg1012427.p1	4.523	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	-1922	+	AK222692 TSC_hg19_v1_chr16_+_57406382	-1976	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	-15651	+	BC069107 NM_002987 BC112066 BC112068	30334	+	BC036316 TSC_hg19_v1_chr16_-_57481298 AK074263 BC002568 AK292281 AL136613 BC071740 BC024196 AF248964 NM_020313 BC067303	72993	-	AK075438 NM_020312 TSC_hg19_v1_chr16_+_57481390 AK295793 BC064946 AK293585 BC029341 BC054340 AF161444 AK290627 AK303527 CU687976 EU832506 EU832587	73015	+	AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##BC069107|CCL17|6361|chemokine (C-C motif) ligand 17##NM_002987|CCL17|6361|chemokine (C-C motif) ligand 17##BC112066|CCL17|6361|chemokine (C-C motif) ligand 17##BC112068|CCL17|6361|chemokine (C-C motif) ligand 17##AK074263|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##BC002568|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##AK292281|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##AL136613|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##BC071740|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##BC024196|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##AF248964|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##NM_020313|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##BC067303|CIAPIN1|57019|cytokine induced apoptosis inhibitor 1##AK075438|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##NM_020312|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##AK295793|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##BC064946|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##AK293585|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##BC029341|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##BC054340|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##AF161444|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##AK290627|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##AK303527|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##EU832506|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)##EU832587|COQ9|57017|coenzyme Q9 homolog (S. cerevisiae)	0.6728	0.0	denovo_WM_7:7:0.423
chr4	74459472	74459641	reg1013726.p1	4.523	+	AK290556 NM_001133 BC109020 BC109021 L35486	-112086	+	NM_001134 V01514 AK297669 TSC_hg19_v1_chr4_+_74301937 AK297674 AK314817 BC027881 DQ890942 DQ894103 CU693306	-157601	+	X51365 X51363 X51364 TSC_hg19_v1_chr4_+_74286879	-172694	+	AY217664 BC058835 NM_177532 AY217665 CR749283 AK126346 NM_201431	26663	-	NM_000584 Y00787 AK131067 AK311874 M17017 M26383 BC013615 AF043337 AB590232 DQ890564 DQ893727 BT007067 CR542151 Z11686	146742	+	NM_002993 AK311981 U81234 BC013744 DQ891500 DQ894692 AB463491	242813	+	AK290556|AFM|173|afamin##NM_001133|AFM|173|afamin##BC109020|AFM|173|afamin##BC109021|AFM|173|afamin##L35486|AFM|173|afamin##NM_001134|AFP|174|alpha-fetoprotein##V01514|AFP|174|alpha-fetoprotein##AK297669|AFP|174|alpha-fetoprotein##AK297674|AFP|174|alpha-fetoprotein##AK314817|AFP|174|alpha-fetoprotein##BC027881|AFP|174|alpha-fetoprotein##DQ890942|AFP|174|alpha-fetoprotein##DQ894103|AFP|174|alpha-fetoprotein##X51365|ALB|213|albumin##X51363|ALB|213|albumin##X51364|ALB|213|albumin##AY217664|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##BC058835|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_177532|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AY217665|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##CR749283|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##AK126346|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_201431|RASSF6|166824|Ras association (RalGDS/AF-6) domain family member 6##NM_000584|IL8|3576|interleukin 8##Y00787|IL8|3576|interleukin 8##AK131067|IL8|3576|interleukin 8##AK311874|IL8|3576|interleukin 8##M17017|IL8|3576|interleukin 8##M26383|IL8|3576|interleukin 8##BC013615|IL8|3576|interleukin 8##DQ890564|IL8|3576|interleukin 8##DQ893727|IL8|3576|interleukin 8##BT007067|IL8|3576|interleukin 8##CR542151|IL8|3576|interleukin 8##Z11686|IL8|3576|interleukin 8##NM_002993|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##AK311981|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##U81234|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##BC013744|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ891500|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)##DQ894692|CXCL6|6372|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)	0.0	0.996739	CTCF.p2:-1:0.997
chr5	156625295	156625475	reg1011131.p2	4.523	+	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	-17468	+	AY973323 CU692472 AF465821 BC025397 AK057543 BC022035 BC025409 BC025998 NM_130899	-32157	-	NM_001100816 TSC_hg19_v1_chr5_-_156569881 AK123613 AF031383 BC005250 BC006968 AK308393 NM_004270	-55533	-	TSC_hg19_v1_chr5_+_156693105 AL136549 NM_001037333 AK294220 AK295865 AK297401 AK303702 AB032994 AF160973 NM_001037332	67867	+	BC011762 BC021008 NM_014376	70971	+	AK289701 BC022570 NM_001001343	147315	-	AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase##AY973323|FAM71B|153745|family with sequence similarity 71, member B##AF465821|FAM71B|153745|family with sequence similarity 71, member B##BC025397|FAM71B|153745|family with sequence similarity 71, member B##AK057543|FAM71B|153745|family with sequence similarity 71, member B##BC022035|FAM71B|153745|family with sequence similarity 71, member B##BC025409|FAM71B|153745|family with sequence similarity 71, member B##BC025998|FAM71B|153745|family with sequence similarity 71, member B##NM_130899|FAM71B|153745|family with sequence similarity 71, member B##NM_001100816|MED7|9443|mediator complex subunit 7##AF031383|MED7|9443|mediator complex subunit 7##BC005250|MED7|9443|mediator complex subunit 7##BC006968|MED7|9443|mediator complex subunit 7##AK308393|MED7|9443|mediator complex subunit 7##NM_004270|MED7|9443|mediator complex subunit 7##AL136549|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_001037333|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK294220|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK295865|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK297401|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK303702|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AB032994|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AF160973|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_001037332|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##BC011762|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##BC021008|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_014376|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK289701|FNDC9|408263|fibronectin type III domain containing 9##BC022570|FNDC9|408263|fibronectin type III domain containing 9##NM_001001343|FNDC9|408263|fibronectin type III domain containing 9	0.810987	0.0	denovo_WM_7:-80:0.534
chr10	5888231	5888332	reg1009653.p1	4.522	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-32846	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-33015	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-115609	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	43575	-	TSC_hg19_v1_chr10_+_5932205 AK095343	43918	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	43930	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.0	0.0	
chr11	13359685	13359809	reg1007665.p2	4.522	+	TSC_hg19_v1_chr11_+_13299403 BC031214 BC034314	-60292	+	TSC_hg19_v1_chr11_+_13299376 AF044288 AK095749	-60365	+	TSC_hg19_v1_chr11_+_13299375 U60415	-60374	+	AK298226 TSC_hg19_v1_chr11_-_13484770 AK310935 AK292392 AK095946 BC005071 AL832981 NM_032320 AF329102	125044	-	V00597 BC096142 BC096143 BC096144 BC096145 NM_000315	157798	-	TSC_hg19_v1_chr11_+_13690212 NM_032228 AY358784	330443	+	BC031214|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AF044288|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AK095749|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##U60415|ARNTL|406|aryl hydrocarbon receptor nuclear translocator-like##AK298226|BTBD10|84280|BTB (POZ) domain containing 10##AK310935|BTBD10|84280|BTB (POZ) domain containing 10##AK292392|BTBD10|84280|BTB (POZ) domain containing 10##AK095946|BTBD10|84280|BTB (POZ) domain containing 10##BC005071|BTBD10|84280|BTB (POZ) domain containing 10##AL832981|BTBD10|84280|BTB (POZ) domain containing 10##NM_032320|BTBD10|84280|BTB (POZ) domain containing 10##AF329102|BTBD10|84280|BTB (POZ) domain containing 10##V00597|PTH|5741|parathyroid hormone##BC096142|PTH|5741|parathyroid hormone##BC096143|PTH|5741|parathyroid hormone##BC096144|PTH|5741|parathyroid hormone##BC096145|PTH|5741|parathyroid hormone##NM_000315|PTH|5741|parathyroid hormone##NM_032228|FAR1|84188|fatty acyl CoA reductase 1##AY358784|FAR1|84188|fatty acyl CoA reductase 1	0.208484	0.0	
chr1	184517442	184517588	reg1010663.p1	4.522	+	TSC_hg19_v1_chr1_+_184356377 AK056487	-161127	+	AF312864 TSC_hg19_v1_chr1_+_184356245 AY258286	-161249	+	TSC_hg19_v1_chr1_+_184356194 BC028567	-161318	+	BC144149 BC144150 AF288393 TSC_hg19_v1_chr1_-_184723746 AB385131	206242	-	TSC_hg19_v1_chr1_-_184723964 BC070173 BC105586	206450	-	AK225171 TSC_hg19_v1_chr1_-_184723985 AK315118	206469	-	AK056487|C1orf21|81563|chromosome 1 open reading frame 21##AF312864|C1orf21|81563|chromosome 1 open reading frame 21##AY258286|C1orf21|81563|chromosome 1 open reading frame 21##BC028567|C1orf21|81563|chromosome 1 open reading frame 21##BC144149|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC144150|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AF288393|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC070173|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##BC105586|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK225171|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3##AK315118|EDEM3|80267|ER degradation enhancer, mannosidase alpha-like 3	0.993086	0.0	
chr13	78768930	78769073	reg1008873.p2	4.522	+	D90402 NM_000115 S57283 AF308156	-219285	-	AF114165 NM_001201397	-275099	-	AF114163 AF114164 TSC_hg19_v1_chr13_-_78493569	-275450	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	401281	+	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	408722	-	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	464292	-	D90402|EDNRB|1910|endothelin receptor type B##NM_000115|EDNRB|1910|endothelin receptor type B##S57283|EDNRB|1910|endothelin receptor type B##AF114165|EDNRB|1910|endothelin receptor type B##NM_001201397|EDNRB|1910|endothelin receptor type B##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219	1.018553	0.0	denovo_WM_7:-93:0.833
chr17	1987195	1987327	reg1012868.p1	4.522	+	DQ187313 NM_001098202	-27704	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	-28863	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-41953	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	219551	-	AB385377 AY145883 TSC_hg19_v1_chr17_-_2207028 NM_017575	219779	-	TSC_hg19_v1_chr17_+_2207247 AY743706 AK223120 AK023169 NM_021947 BC057234	219991	+	DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY145883|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_017575|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY743706|SRR|63826|serine racemase##AK223120|SRR|63826|serine racemase##AK023169|SRR|63826|serine racemase##NM_021947|SRR|63826|serine racemase##BC057234|SRR|63826|serine racemase	0.0	0.0	
chr17	49190057	49190226	reg1009931.p1	4.522	+	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-65913	-	AK313904 NM_001243877	-244803	-	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	-246445	-	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	8014	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	40770	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	40791	+	BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	2.696844	0.0	denovo_WM_7:38:0.747	denovo_WM_7:-87:0.604	denovo_WM_7:-88:0.311	denovo_WM_7:-102:0.297	denovo_WM_7:-103:0.616
chr17	74264361	74264514	reg1004088.p3	4.522	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	-2930	+	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	-3153	+	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	-27989	-	EU832276 EU832361 BC131559 AL136774 NM_032134	39233	-	TSC_hg19_v1_chr17_-_74349591 CU679229 BC009012	85212	-	TSC_hg19_v1_chr17_-_74349948 D61391 AK312637	85492	-	BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##EU832276|QRICH2|84074|glutamine rich 2##EU832361|QRICH2|84074|glutamine rich 2##BC131559|QRICH2|84074|glutamine rich 2##AL136774|QRICH2|84074|glutamine rich 2##NM_032134|QRICH2|84074|glutamine rich 2##BC009012|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1##D61391|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1##AK312637|PRPSAP1|5635|phosphoribosyl pyrophosphate synthetase-associated protein 1	0.0	0.0	
chr22	39838618	39838798	reg1007296.p2	4.522	+	TSC_hg19_v1_chr22_+_39795812 AK291668 AK316004 AK308903 AB591024 CU690722	-42897	+	BC050554 NM_006116 NM_153497 TSC_hg19_v1_chr22_+_39795796 AK296314 BC038582 AF425640 AK312456 U49928	-42938	+	AJ002303 NM_145738	-78534	+	TSC_hg19_v1_chr22_+_39853325 NM_002409	14612	+	TSC_hg19_v1_chr22_+_39853534 BC075025 BC075026 BC113383 BC113718	14828	+	NM_001098270 AK313664 CR456519 D13789 AB463105 CU013119 CU013407 HQ258450	44582	+	AK291668|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK316004|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK308903|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##BC050554|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_006116|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##NM_153497|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK296314|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##BC038582|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AF425640|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AK312456|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##U49928|TAB1|10454|TGF-beta activated kinase 1/MAP3K7 binding protein 1##AJ002303|SYNGR1|9145|synaptogyrin 1##NM_145738|SYNGR1|9145|synaptogyrin 1##NM_002409|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075025|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC075026|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113383|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##BC113718|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##NM_001098270|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##AK313664|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CR456519|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##D13789|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013119|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##CU013407|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase##HQ258450|MGAT3|4248|mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	0.0	0.130342	
chr5	114715343	114715448	reg1013253.p1	4.522	+	AB587510 AJ580807 NM_001040440	-83047	-	BC031242 AK307327 NM_152549	-83420	-	AY780790 AB590094 TSC_hg19_v1_chr5_-_114598563 NM_005023	-116829	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	164962	-	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	165168	-	BC109265 BC109266 NM_021649	222722	-	AJ580807|CCDC112|153733|coiled-coil domain containing 112##NM_001040440|CCDC112|153733|coiled-coil domain containing 112##BC031242|CCDC112|153733|coiled-coil domain containing 112##NM_152549|CCDC112|153733|coiled-coil domain containing 112##AY780790|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##NM_005023|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2	0.0	0.0	
chr6	157984841	157984928	reg1010673.p1	4.522	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-182345	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-239667	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-240300	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	259405	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	259490	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	418003	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chrX	9494111	9494291	reg1011295.p2	4.522	+	TSC_hg19_v1_chrX_+_9433108 Y12781 BC052304 NM_005647	-60967	+	TSC_hg19_v1_chrX_+_9431357 AK289409 NM_001139466 NM_001139467 NM_001139468 AK290962 BC032708	-62854	+	BC120955 BC120956 NM_205849	-493099	-	Z48804 BC015657 BC068977 NM_000273	239759	-	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	260279	+	BC140866 TSC_hg19_v1_chrX_+_9754543	260342	+	Y12781|TBL1X|6907|transducin (beta)-like 1X-linked##BC052304|TBL1X|6907|transducin (beta)-like 1X-linked##NM_005647|TBL1X|6907|transducin (beta)-like 1X-linked##AK289409|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139466|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139467|TBL1X|6907|transducin (beta)-like 1X-linked##NM_001139468|TBL1X|6907|transducin (beta)-like 1X-linked##AK290962|TBL1X|6907|transducin (beta)-like 1X-linked##BC032708|TBL1X|6907|transducin (beta)-like 1X-linked##BC120955|FAM9B|171483|family with sequence similarity 9, member B##BC120956|FAM9B|171483|family with sequence similarity 9, member B##NM_205849|FAM9B|171483|family with sequence similarity 9, member B##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##BC140866|SHROOM2|357|shroom family member 2	0.249339	0.0	
chr1	42139216	42139373	reg1014021.p1	4.521	+	BC034393 X55177 M65199 NM_001956	-188975	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-431458	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-431509	-	TSC_hg19_v1_chr1_-_42384357 BC040942	245048	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	245079	-	TSC_hg19_v1_chr1_-_42501606 BC046120	362335	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	0.041523	0.0	
chr5	10308401	10308523	reg1014757.p1	4.521	+	NM_138809	-295	-	BC001573 TSC_hg19_v1_chr5_-_10307978 AJ278125 AK074197	-531	-	TSC_hg19_v1_chr5_+_10250440 DQ892743 DQ895989 AB383748 BC002971	-58012	+	TSC_hg19_v1_chr5_-_10353712 BC032907	45251	-	TSC_hg19_v1_chr5_+_10353827 AK300034 BC111494 AB011169 AK296585 AK299339 NM_005885	45352	+	TSC_hg19_v1_chr5_+_10353836 AK000970 BC136461 BC136462 BC142679 BC142694	45402	+	NM_138809|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##BC001573|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##AJ278125|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##AK074197|CMBL|134147|carboxymethylenebutenolidase homolog (Pseudomonas)##DQ892743|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##DQ895989|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##BC002971|CCT5|22948|chaperonin containing TCP1, subunit 5 (epsilon)##AK300034|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC111494|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AB011169|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK296585|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK299339|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_005885|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK000970|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136461|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136462|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142679|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142694|MARCH6|10299|membrane-associated ring finger (C3HC4) 6	0.997815	0.0	
chr6_ssto_hap7	1263177	1263243	reg1019494.p2	4.521	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr13	31236956	31237065	reg1001256.p2	4.520	+	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	-45047	+	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	-45383	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	-196952	-	AK314143 NM_001204406	50604	+	NM_001629 TSC_hg19_v1_chr13_+_31309681	72654	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	72705	+	NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein	0.774024	0.0	denovo_WM_7:51:0.677
chr1	33127335	33127438	reg1012869.p1	4.520	+	NM_001135255 NM_005610 TSC_hg19_v1_chr1_+_33116808 AK312571 AK299410 BC003092 X74262 X71810 BC053904 AK222779 BC075836 AB527301 DQ892499 DQ895712 CU678370 BT007309 AK299251 NM_001135256	-10533	+	AY099494 TSC_hg19_v1_chr1_-_33116147 BC058843 AY158005 AY099493 AY151084 AY151085 NM_178547	-11249	-	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	-122342	+	AB590598 AK302275 TSC_hg19_v1_chr1_-_33168346	40920	-	AK297958 TSC_hg19_v1_chr1_-_33168379 NM_001161708 NM_030786	40981	-	TSC_hg19_v1_chr1_+_33207423 NM_020888	80181	+	NM_001135255|RBBP4|5928|retinoblastoma binding protein 4##NM_005610|RBBP4|5928|retinoblastoma binding protein 4##AK312571|RBBP4|5928|retinoblastoma binding protein 4##AK299410|RBBP4|5928|retinoblastoma binding protein 4##BC003092|RBBP4|5928|retinoblastoma binding protein 4##X74262|RBBP4|5928|retinoblastoma binding protein 4##X71810|RBBP4|5928|retinoblastoma binding protein 4##BC053904|RBBP4|5928|retinoblastoma binding protein 4##AK222779|RBBP4|5928|retinoblastoma binding protein 4##BC075836|RBBP4|5928|retinoblastoma binding protein 4##DQ892499|RBBP4|5928|retinoblastoma binding protein 4##DQ895712|RBBP4|5928|retinoblastoma binding protein 4##BT007309|RBBP4|5928|retinoblastoma binding protein 4##AK299251|RBBP4|5928|retinoblastoma binding protein 4##NM_001135256|RBBP4|5928|retinoblastoma binding protein 4##AY099494|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##BC058843|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY158005|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY099493|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151084|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151085|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_178547|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AK302275|SYNC|81493|syncoilin, intermediate filament protein##AK297958|SYNC|81493|syncoilin, intermediate filament protein##NM_001161708|SYNC|81493|syncoilin, intermediate filament protein##NM_030786|SYNC|81493|syncoilin, intermediate filament protein##NM_020888|KIAA1522|57648|KIAA1522	1.144851	0.0	denovo_WM_7:93:0.237	denovo_WM_7:94:0.203
chr14	31449459	31449615	reg1015987.p1	4.520	+	TSC_hg19_v1_chr14_+_31343764 NM_001135058 NM_004086 AY358900 AF006740 AK292724 BC000640 BC007230 BC018827	-105819	+	TSC_hg19_v1_chr14_+_31091535 AK298622 AK222820 AB463243 BC017734 AF086916 CU676040 AF110646 AF092139	-357993	+	AK308587 TSC_hg19_v1_chr14_+_31091524 AF319958 NM_016106 NM_182835 AB020724 AK290410 AK297873 AK301406 AK307960 AK316212 AK299222	-358013	+	NM_001128126 NM_007077	45145	+	BC126221 BC132673 BC143933 AK314041 TSC_hg19_v1_chr14_-_31495586 AK290229 U17989 NM_001083893 NM_014574	46033	-	TSC_hg19_v1_chr14_-_31676690 NM_015382	227148	-	NM_001135058|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##NM_004086|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AY358900|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AF006740|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AK292724|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##BC000640|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##BC007230|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##BC018827|COCH|1690|coagulation factor C homolog, cochlin (Limulus polyphemus)##AK298622|SCFD1|23256|sec1 family domain containing 1##AK222820|SCFD1|23256|sec1 family domain containing 1##BC017734|SCFD1|23256|sec1 family domain containing 1##AF086916|SCFD1|23256|sec1 family domain containing 1##AF110646|SCFD1|23256|sec1 family domain containing 1##AF092139|SCFD1|23256|sec1 family domain containing 1##AK308587|SCFD1|23256|sec1 family domain containing 1##AF319958|SCFD1|23256|sec1 family domain containing 1##NM_016106|SCFD1|23256|sec1 family domain containing 1##NM_182835|SCFD1|23256|sec1 family domain containing 1##AB020724|SCFD1|23256|sec1 family domain containing 1##AK290410|SCFD1|23256|sec1 family domain containing 1##AK297873|SCFD1|23256|sec1 family domain containing 1##AK301406|SCFD1|23256|sec1 family domain containing 1##AK307960|SCFD1|23256|sec1 family domain containing 1##AK316212|SCFD1|23256|sec1 family domain containing 1##AK299222|SCFD1|23256|sec1 family domain containing 1##NM_001128126|AP4S1|11154|adaptor-related protein complex 4, sigma 1 subunit##NM_007077|AP4S1|11154|adaptor-related protein complex 4, sigma 1 subunit##BC126221|STRN3|29966|striatin, calmodulin binding protein 3##BC132673|STRN3|29966|striatin, calmodulin binding protein 3##BC143933|STRN3|29966|striatin, calmodulin binding protein 3##AK314041|STRN3|29966|striatin, calmodulin binding protein 3##AK290229|STRN3|29966|striatin, calmodulin binding protein 3##U17989|STRN3|29966|striatin, calmodulin binding protein 3##NM_001083893|STRN3|29966|striatin, calmodulin binding protein 3##NM_014574|STRN3|29966|striatin, calmodulin binding protein 3##NM_015382|HECTD1|25831|HECT domain containing 1	0.983244	0.856747	CTCF.p2:-15:0.857	denovo_WM_7:78:0.242	denovo_WM_7:81:0.348
chr14	64856419	64856522	reg1010143.p1	4.520	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	-1374	+	AK302747 NM_005956	-1717	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	-51112	-	AK315336 NM_004857 BC057229	75790	+	TSC_hg19_v1_chr14_-_64970524 NM_006977 BC035804	113973	-	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	114788	+	AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_006977|ZBTB25|7597|zinc finger and BTB domain containing 25##BC035804|ZBTB25|7597|zinc finger and BTB domain containing 25##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1	1.001736	0.0	denovo_WM_7:-34:0.247	denovo_WM_7:-37:0.493
chr16	57032210	57032376	reg1004133.p2	4.520	+	TSC_hg19_v1_chr16_+_57023474 AK097030	-8833	+	M30185 AK297699 NM_000078 TSC_hg19_v1_chr16_+_56995861 AK291586 BC025739 EU176529 CU693046 BT020064 M83573	-36456	+	AK302167 TSC_hg19_v1_chr16_+_56966053 AB034989 AK223233 AK291565 AK292088 AK304800 BC009739 DQ837586 AF055001 D14695 BC000086 BC008320 BC032673 DQ891867 EU176642 CR457116 AF055003	-66152	+	AK074182 NM_032206	18692	+	AF389420 EF452236 TSC_hg19_v1_chr16_+_57054697	22367	+	TSC_hg19_v1_chr16_+_57126462 NM_152727	94172	+	AK097030|NLRC5|84166|NLR family, CARD domain containing 5##M30185|CETP|1071|cholesteryl ester transfer protein, plasma##AK297699|CETP|1071|cholesteryl ester transfer protein, plasma##NM_000078|CETP|1071|cholesteryl ester transfer protein, plasma##AK291586|CETP|1071|cholesteryl ester transfer protein, plasma##BC025739|CETP|1071|cholesteryl ester transfer protein, plasma##EU176529|CETP|1071|cholesteryl ester transfer protein, plasma##BT020064|CETP|1071|cholesteryl ester transfer protein, plasma##M83573|CETP|1071|cholesteryl ester transfer protein, plasma##AK302167|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AB034989|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK223233|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK291565|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK292088|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK304800|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC009739|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ837586|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055001|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##D14695|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC000086|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC008320|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC032673|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ891867|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##EU176642|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##CR457116|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055003|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK074182|NLRC5|84166|NLR family, CARD domain containing 5##NM_032206|NLRC5|84166|NLR family, CARD domain containing 5##AF389420|NLRC5|84166|NLR family, CARD domain containing 5##EF452236|NLRC5|84166|NLR family, CARD domain containing 5##NM_152727|CPNE2|221184|copine II	0.0	0.0	
chr16	82465999	82466100	reg1006014.p2	4.520	+	CU689076 AB463897 TSC_hg19_v1_chr16_-_82203821 BC005242 BC031017 BC011020 BC029395 X98263 AK222667 AK314163 NM_005792	-262239	-	TSC_hg19_v1_chr16_+_82068989 DQ893100 DQ896372	-397056	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	-397117	+	TSC_hg19_v1_chr16_+_82660390 NM_001220488 NM_001220489 NM_001220490 NM_001220491 NM_001220492 NM_001257	194345	+	AK304592 TSC_hg19_v1_chr16_+_82660573 AK295886 AK298612 AK307862 EU190357 EU190358 BC028624 BC030653	194540	+	TSC_hg19_v1_chr16_+_82660641 AK304733 BC012615 AB384879 CU688968 DQ891713 DQ894890	194620	+	BC005242|MPHOSPH6|10200|M-phase phosphoprotein 6##BC031017|MPHOSPH6|10200|M-phase phosphoprotein 6##BC011020|MPHOSPH6|10200|M-phase phosphoprotein 6##BC029395|MPHOSPH6|10200|M-phase phosphoprotein 6##X98263|MPHOSPH6|10200|M-phase phosphoprotein 6##AK222667|MPHOSPH6|10200|M-phase phosphoprotein 6##AK314163|MPHOSPH6|10200|M-phase phosphoprotein 6##NM_005792|MPHOSPH6|10200|M-phase phosphoprotein 6##DQ893100|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##DQ896372|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##NM_001220488|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220489|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220490|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220491|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220492|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001257|CDH13|1012|cadherin 13, H-cadherin (heart)##AK304592|CDH13|1012|cadherin 13, H-cadherin (heart)##AK295886|CDH13|1012|cadherin 13, H-cadherin (heart)##AK298612|CDH13|1012|cadherin 13, H-cadherin (heart)##AK307862|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190357|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190358|CDH13|1012|cadherin 13, H-cadherin (heart)##BC028624|CDH13|1012|cadherin 13, H-cadherin (heart)##BC030653|CDH13|1012|cadherin 13, H-cadherin (heart)##AK304733|CDH13|1012|cadherin 13, H-cadherin (heart)##BC012615|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ891713|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ894890|CDH13|1012|cadherin 13, H-cadherin (heart)	1.366228	0.0	denovo_WM_7:-69:0.919
chr17	37931419	37931505	reg1011906.p1	4.520	+	AK290115 NM_001242443	-35243	+	AK125544 NM_001242442	-36439	+	AK294620 NM_001030002 BC006535 TSC_hg19_v1_chr17_+_37894600	-36883	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	88968	-	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	92981	+	AF119884 NM_018530	142330	-	AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AK125544|GRB7|2886|growth factor receptor-bound protein 7##NM_001242442|GRB7|2886|growth factor receptor-bound protein 7##AK294620|GRB7|2886|growth factor receptor-bound protein 7##NM_001030002|GRB7|2886|growth factor receptor-bound protein 7##BC006535|GRB7|2886|growth factor receptor-bound protein 7##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B	0.99726	0.0	denovo_WM_7:2:0.763	denovo_WM_7:3:0.234
chr1	9096905	9097010	reg1013035.p1	4.520	+	AB527336 AY571960 NM_207420	-10554	-	NM_001215 AK300652 BC034350 M57892 AB102863 AB103091	-91024	+	AK309177 NM_001428	-157807	-	TSC_hg19_v1_chr1_-_9117554 AF451839 AF479408	20621	-	TSC_hg19_v1_chr1_-_9129605 DQ892291 DQ895491 CU674838 AK300091	32642	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	32684	-	AY571960|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_207420|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_001215|CA6|765|carbonic anhydrase VI##AK300652|CA6|765|carbonic anhydrase VI##BC034350|CA6|765|carbonic anhydrase VI##M57892|CA6|765|carbonic anhydrase VI##AB102863|CA6|765|carbonic anhydrase VI##AB103091|CA6|765|carbonic anhydrase VI##AK309177|ENO1|2023|enolase 1, (alpha)##NM_001428|ENO1|2023|enolase 1, (alpha)##AF451839|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AF479408|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892291|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ895491|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK300091|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5	1.925101	0.0	denovo_WM_7:-27:0.739	denovo_WM_7:-49:0.425	denovo_WM_7:-50:0.425
chr2	7966228	7966345	reg1010396.p2	4.520	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-908699	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-948423	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-959583	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	855917	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1011433	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	1177535	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.186535	0.0	
chr4	84074558	84074668	reg1009990.p2	4.520	+	TSC_hg19_v1_chr4_-_84035912 AK000140 NM_001130715 NM_016619	-38686	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	-38722	-	BC012205 NM_001130716	-43610	-	TSC_hg19_v1_chr4_-_84205924 DQ895928 EU176380 BC008804 AK023076	131302	-	TSC_hg19_v1_chr4_-_84205952 AK129583 AK300972 BC020728 AJ621061 NM_015697	131390	-	AJ627581 TSC_hg19_v1_chr4_-_84255962 AF084467 AM419200 AY948074 CU690802 AF152376 NM_001199830 AF165154 AK075400	181333	-	AK000140|PLAC8|51316|placenta-specific 8##NM_001130715|PLAC8|51316|placenta-specific 8##NM_016619|PLAC8|51316|placenta-specific 8##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8##BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##DQ895928|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##EU176380|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC008804|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK023076|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK129583|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK300972|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC020728|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AJ621061|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##NM_015697|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AF084467|HPSE|10855|heparanase##AM419200|HPSE|10855|heparanase##AY948074|HPSE|10855|heparanase##AF152376|HPSE|10855|heparanase##NM_001199830|HPSE|10855|heparanase##AF165154|HPSE|10855|heparanase##AK075400|HPSE|10855|heparanase	0.0	0.0	
chr9	34097846	34097946	reg1004811.p1	4.520	+	TSC_hg19_v1_chr9_-_34048895 BC111409 AK302335 NM_018449	-48980	-	AB209911 TSC_hg19_v1_chr9_-_34048886 AK302754 AK294952 AK299183 AK303493 CR933678	-49019	-	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	-280224	+	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	28690	-	BC063823 TSC_hg19_v1_chr9_-_34126702 AB067479 DQ518909	28799	-	TSC_hg19_v1_chr9_-_34126703 NM_015397	28840	-	BC111409|UBAP2|55833|ubiquitin associated protein 2##AK302335|UBAP2|55833|ubiquitin associated protein 2##NM_018449|UBAP2|55833|ubiquitin associated protein 2##AB209911|UBAP2|55833|ubiquitin associated protein 2##AK302754|UBAP2|55833|ubiquitin associated protein 2##AK294952|UBAP2|55833|ubiquitin associated protein 2##AK299183|UBAP2|55833|ubiquitin associated protein 2##AK303493|UBAP2|55833|ubiquitin associated protein 2##CR933678|UBAP2|55833|ubiquitin associated protein 2##AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12##BC063823|DCAF12|25853|DDB1 and CUL4 associated factor 12##AB067479|DCAF12|25853|DDB1 and CUL4 associated factor 12##DQ518909|DCAF12|25853|DDB1 and CUL4 associated factor 12##NM_015397|DCAF12|25853|DDB1 and CUL4 associated factor 12	0.99212	0.0	denovo_WM_7:49:0.723
chr1	171750608	171750709	reg1009923.p1	4.519	+	AK092254 TSC_hg19_v1_chr1_+_171711293	-39371	+	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	-39423	-	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	-128858	-	NM_001007239 NM_014955 NM_015935 TSC_hg19_v1_chr1_+_171750799 AK304471 AK223493	122	+	TSC_hg19_v1_chr1_+_171750809 AK291740 AK027621	156	+	TSC_hg19_v1_chr1_+_171750834 AB242174 AF132936 AL049669 AK027552 AB242175	180	+	BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_001007239|METTL13|51603|methyltransferase like 13##NM_014955|METTL13|51603|methyltransferase like 13##NM_015935|METTL13|51603|methyltransferase like 13##AK304471|METTL13|51603|methyltransferase like 13##AK223493|METTL13|51603|methyltransferase like 13##AK291740|METTL13|51603|methyltransferase like 13##AK027621|METTL13|51603|methyltransferase like 13##AB242174|METTL13|51603|methyltransferase like 13##AF132936|METTL13|51603|methyltransferase like 13##AL049669|METTL13|51603|methyltransferase like 13##AK027552|METTL13|51603|methyltransferase like 13##AB242175|METTL13|51603|methyltransferase like 13	0.0	0.0	
chr14	53167674	53167806	reg1011497.p1	4.519	+	AF081886 NM_014584 BC008674 TSC_hg19_v1_chr14_-_53162436 BC012941	-5313	-	AY358463 TSC_hg19_v1_chr14_-_53162404	-5353	-	CU679029 CU680454 GQ129372 GQ129373 TSC_hg19_v1_chr14_-_53162248 AK292839	-5515	-	NM_002806 AK299155 TSC_hg19_v1_chr14_+_53173926 BC005390 AK307087 D78275 AK313670 AF006305 AB464079 DQ893704 BT006843 CR456709	6176	+	TSC_hg19_v1_chr14_+_53196880 NM_001130701 NM_145251 AL832591 AK098195	29137	+	TSC_hg19_v1_chr14_+_53196923 BX647636 BC020265 BC146995 BC146998	29217	+	AF081886|ERO1L|30001|ERO1-like (S. cerevisiae)##NM_014584|ERO1L|30001|ERO1-like (S. cerevisiae)##BC008674|ERO1L|30001|ERO1-like (S. cerevisiae)##BC012941|ERO1L|30001|ERO1-like (S. cerevisiae)##AY358463|ERO1L|30001|ERO1-like (S. cerevisiae)##GQ129372|ERO1L|30001|ERO1-like (S. cerevisiae)##GQ129373|ERO1L|30001|ERO1-like (S. cerevisiae)##AK292839|ERO1L|30001|ERO1-like (S. cerevisiae)##NM_002806|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##AK299155|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##BC005390|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##AK307087|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##D78275|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##AK313670|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##AF006305|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##DQ893704|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##BT006843|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##CR456709|PSMC6|5706|proteasome (prosome, macropain) 26S subunit, ATPase, 6##NM_001130701|STYX|6815|serine/threonine/tyrosine interacting protein##NM_145251|STYX|6815|serine/threonine/tyrosine interacting protein##AL832591|STYX|6815|serine/threonine/tyrosine interacting protein##AK098195|STYX|6815|serine/threonine/tyrosine interacting protein##BX647636|STYX|6815|serine/threonine/tyrosine interacting protein##BC020265|STYX|6815|serine/threonine/tyrosine interacting protein##BC146995|STYX|6815|serine/threonine/tyrosine interacting protein##BC146998|STYX|6815|serine/threonine/tyrosine interacting protein	0.831014	0.0	denovo_WM_7:13:0.695
chr21	15466926	15467069	reg1011487.p1	4.519	+	TSC_hg19_v1_chr21_+_15399763 BC070147 BC024173 BC048201	-67233	+	AY172978 NM_174981 AY465173	-484498	+	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	-4368098	-	AB463838 AY197607 NM_198996	112251	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	121500	+	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	288476	-	AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B##BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13	1.527307	0.0	denovo_WM_7:42:0.217	denovo_WM_7:66:0.246
chr13	30970796	30970927	reg1008440.p1	4.518	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-89292	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-89710	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-546020	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	69132	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	69197	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	220766	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	1.02985	0.0	denovo_WM_7:57:0.401	denovo_WM_7:58:0.402
chr14	75954035	75954179	reg1004173.p2	4.518	+	BC051303 NM_001135049	-55271	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	-59094	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	-59466	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	34683	+	TSC_hg19_v1_chr14_+_75988840 D42106	34745	+	NM_017791 AY260572 AY260577 BC019087 AK000378	90858	+	BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2	0.0	0.0	
chr14	76669822	76669995	reg1009376.p1	4.518	+	AK000696 TSC_hg19_v1_chr14_+_76618289	-51602	+	TSC_hg19_v1_chr14_+_76618279 AB032978	-51631	+	TSC_hg19_v1_chr14_+_76618258 NM_017926 NM_017972 BC058032	-51652	+	NM_004452	167781	+	TSC_hg19_v1_chr14_+_77227817 AK094330	557892	+	TSC_hg19_v1_chr14_+_77228562 NM_014909 AL832588 BC009031 AB028959	558547	+	AK000696|C14orf118|55668|chromosome 14 open reading frame 118##AB032978|C14orf118|55668|chromosome 14 open reading frame 118##NM_017926|C14orf118|55668|chromosome 14 open reading frame 118##NM_017972|C14orf118|55668|chromosome 14 open reading frame 118##BC058032|C14orf118|55668|chromosome 14 open reading frame 118##NM_004452|ESRRB|2103|estrogen-related receptor beta##NM_014909|VASH1|22846|vasohibin 1##AL832588|VASH1|22846|vasohibin 1##BC009031|VASH1|22846|vasohibin 1##AB028959|VASH1|22846|vasohibin 1	0.0	0.0	
chr6	27095694	27095863	reg1008883.p1	4.518	+	TSC_hg19_v1_chr6_-_26659967 NM_001242797 NM_001242798 NM_001242799 NM_024639	-435826	-	TSC_hg19_v1_chr6_+_26597203 NM_013375 BC066313 BC048812 AB027258 AB463399 CU688138 CU690582 EU446795	-498571	+	TSC_hg19_v1_chr6_+_26538630 NM_006353 AK311841 BC001282	-557148	+	AB591038 BC014312 TSC_hg19_v1_chr6_-_27100575 NM_021058 AK311849	4787	-	TSC_hg19_v1_chr6_+_27100821 AK312124 NM_021064 L19778 BC067782 BC016677 AB590259 DQ891024 DQ894204 DQ894286	5039	+	BC016336 BC075806 AB590709 BC066250 BC067496 BC067497 HQ257982 NM_003495	11295	+	NM_001242797|ZNF322|79692|zinc finger protein 322##NM_001242798|ZNF322|79692|zinc finger protein 322##NM_001242799|ZNF322|79692|zinc finger protein 322##NM_024639|ZNF322|79692|zinc finger protein 322##NM_013375|ABT1|29777|activator of basal transcription 1##BC066313|ABT1|29777|activator of basal transcription 1##BC048812|ABT1|29777|activator of basal transcription 1##AB027258|ABT1|29777|activator of basal transcription 1##EU446795|ABT1|29777|activator of basal transcription 1##NM_006353|HMGN4|10473|high mobility group nucleosomal binding domain 4##AK311841|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC001282|HMGN4|10473|high mobility group nucleosomal binding domain 4##BC014312|HIST1H2BJ|8970|histone cluster 1, H2bj##NM_021058|HIST1H2BJ|8970|histone cluster 1, H2bj##AK311849|HIST1H2BJ|8970|histone cluster 1, H2bj##AK312124|HIST1H2AG|8969|histone cluster 1, H2ag##NM_021064|HIST1H2AG|8969|histone cluster 1, H2ag##L19778|HIST1H2AG|8969|histone cluster 1, H2ag##BC067782|HIST1H2AG|8969|histone cluster 1, H2ag##BC016677|HIST1H2AG|8969|histone cluster 1, H2ag##DQ891024|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894204|HIST1H2AG|8969|histone cluster 1, H2ag##DQ894286|HIST1H2AG|8969|histone cluster 1, H2ag##BC016336|HIST1H4I|8294|histone cluster 1, H4i##BC075806|HIST1H4I|8294|histone cluster 1, H4i##BC066250|HIST1H4I|8294|histone cluster 1, H4i##BC067496|HIST1H4I|8294|histone cluster 1, H4i##BC067497|HIST1H4I|8294|histone cluster 1, H4i##HQ257982|HIST2H4B|554313|histone cluster 2, H4b##NM_003495|HIST1H4I|8294|histone cluster 1, H4i	1.638481	0.0	denovo_WM_7:49:0.603	denovo_WM_7:64:0.347	denovo_WM_7:65:0.381
chr1	192550886	192551016	reg1012478.p1	4.517	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	-6043	+	AY643711 NM_001039152	-264830	+	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	-423348	+	NM_002927 NM_144766 AF030107 BC016667	54333	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	227233	+	BT006790 CU692976 AB528990 AF151828 AK225794 BC015521 TSC_hg19_v1_chr1_-_193028470 AK314445 AK316064 AK024751	477486	-	NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT006790|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF151828|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK225794|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC015521|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK314445|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK316064|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK024751|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5	0.979755	0.0	denovo_WM_7:42:0.360	denovo_WM_7:43:0.619
chr16	70488040	70488145	reg1010515.p1	4.517	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	-15111	-	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-107264	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-154944	+	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	407	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	14748	+	BC027726 AB088369 BC128144 BC128145 AK022874 BC072438 TSC_hg19_v1_chr16_-_70557452 BX648010 AK293235 AK297557 AK096557 NM_001195139 NM_015386	69352	-	NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase##BC027726|COG4|25839|component of oligomeric golgi complex 4##AB088369|COG4|25839|component of oligomeric golgi complex 4##BC128144|COG4|25839|component of oligomeric golgi complex 4##BC128145|COG4|25839|component of oligomeric golgi complex 4##AK022874|COG4|25839|component of oligomeric golgi complex 4##BC072438|COG4|25839|component of oligomeric golgi complex 4##BX648010|COG4|25839|component of oligomeric golgi complex 4##AK293235|COG4|25839|component of oligomeric golgi complex 4##AK297557|COG4|25839|component of oligomeric golgi complex 4##AK096557|COG4|25839|component of oligomeric golgi complex 4##NM_001195139|COG4|25839|component of oligomeric golgi complex 4##NM_015386|COG4|25839|component of oligomeric golgi complex 4	2.124645	0.0	denovo_WM_7:-5:0.492
chr19	16482314	16482494	reg1002115.p1	4.517	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-46635	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-46763	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-173654	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	100372	-	TSC_hg19_v1_chr19_-_16582810 AK291359	100448	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	124566	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.0	0.0	
chr2	231528208	231528365	reg1002859.p2	4.517	+	AK091898 NM_001206704	-246816	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-247330	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-247367	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	49260	+	TSC_hg19_v1_chr2_+_231577633 BC020570	49358	+	AK292382 NM_001130849 NM_001130850 AK315692	49992	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.0	0.0	
chr3	152881300	152881417	reg1010657.p1	4.517	+	TSC_hg19_v1_chr3_+_152880058 BC012362	-1310	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	-1332	+	NM_002563 Z49205	-328623	+	AF086445 NM_001101337	320925	+	AK127282 NM_001251962	957433	+	TSC_hg19_v1_chr3_+_153839226 NM_001251963 NM_015595 AF415175 AK123040 BC078655 AB073386	957844	+	BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##AF086445|C3orf79|152118|chromosome 3 open reading frame 79##NM_001101337|C3orf79|152118|chromosome 3 open reading frame 79##AK127282|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##NM_001251962|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##NM_001251963|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##NM_015595|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##AF415175|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##AK123040|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##BC078655|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26##AB073386|ARHGEF26|26084|Rho guanine nucleotide exchange factor (GEF) 26	1.844912	0.0	denovo_WM_7:74:0.321	denovo_WM_7:75:0.321	denovo_WM_7:76:0.321	denovo_WM_7:94:0.507
chr6_qbl_hap6	3094165	3094279	reg1011334.p1	4.517	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.995747	0.0	
chr12	38780557	38780694	reg1014600.p1	4.516	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-70000	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4605152	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4605239	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	518758	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1056374	-	AK314254 NM_005164	1233217	-	NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2	0.946276	0.0	denovo_WM_7:6:0.776
chr3	31271165	31271252	reg1010596.p1	4.516	+	AL832766 NM_207359	-335056	-	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-622805	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-623186	+	TSC_hg19_v1_chr3_+_31574119 AK311488	302922	+	TSC_hg19_v1_chr3_+_31574468 AK074587	303241	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	303274	+	AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	1.833983	0.0	denovo_WM_7:33:0.368	denovo_WM_7:39:0.253	denovo_WM_7:61:0.702
chr5	127419008	127419146	reg1000614.p4	4.516	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	-314	-	NM_001127385 AB219832 BC071790	-430352	+	NM_001048252 AB219764	-434354	+	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	282	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	396	+	TSC_hg19_v1_chr5_-_127873553 AK300440	454440	-	AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##AK300440|FBN2|2201|fibrillin 2	0.0	0.0	
chr6	57813746	57813923	reg1015840.p1	4.516	+	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-631419	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-726763	-	AB034244 AK313796 NM_183227	-727604	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	473845	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	5182167	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	6216030	-	BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AB034244|RAB23|51715|RAB23, member RAS oncogene family##AK313796|RAB23|51715|RAB23, member RAS oncogene family##NM_183227|RAB23|51715|RAB23, member RAS oncogene family##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain	0.994291	0.0	
chr7	23274298	23274408	reg1011495.p1	4.516	+	NM_007342 AK312991 U97198 TSC_hg19_v1_chr7_+_23221673 BC005327 AK300113 BC107583 BT007409 CU675113 AK298183	-52775	+	NM_018846	-128437	+	TSC_hg19_v1_chr7_+_23145403 AK297595 AL136597 AK296219 AK297369 BC039585 BC009555 AF111113 AK290479 EF560731 EU831631 EU831716 EU831829	-128829	+	TSC_hg19_v1_chr7_+_23286300 AK304671 NM_001005340 NM_002510	11943	+	AK297051 TSC_hg19_v1_chr7_+_23286384 X76534	12031	+	AK297055 AK303071 AK312279 TSC_hg19_v1_chr7_+_23286386	12033	+	NM_007342|NUPL2|11097|nucleoporin like 2##AK312991|NUPL2|11097|nucleoporin like 2##U97198|NUPL2|11097|nucleoporin like 2##BC005327|NUPL2|11097|nucleoporin like 2##AK300113|NUPL2|11097|nucleoporin like 2##BC107583|NUPL2|11097|nucleoporin like 2##BT007409|NUPL2|11097|nucleoporin like 2##AK298183|NUPL2|11097|nucleoporin like 2##NM_018846|KLHL7|55975|kelch-like 7 (Drosophila)##AK297595|KLHL7|55975|kelch-like 7 (Drosophila)##AL136597|KLHL7|55975|kelch-like 7 (Drosophila)##AK296219|KLHL7|55975|kelch-like 7 (Drosophila)##AK297369|KLHL7|55975|kelch-like 7 (Drosophila)##BC039585|KLHL7|55975|kelch-like 7 (Drosophila)##BC009555|KLHL7|55975|kelch-like 7 (Drosophila)##AF111113|KLHL7|55975|kelch-like 7 (Drosophila)##AK290479|KLHL7|55975|kelch-like 7 (Drosophila)##EF560731|KLHL7|55975|kelch-like 7 (Drosophila)##EU831631|KLHL7|55975|kelch-like 7 (Drosophila)##EU831716|KLHL7|55975|kelch-like 7 (Drosophila)##EU831829|KLHL7|55975|kelch-like 7 (Drosophila)##AK304671|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_001005340|GPNMB|10457|glycoprotein (transmembrane) nmb##NM_002510|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297051|GPNMB|10457|glycoprotein (transmembrane) nmb##X76534|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297055|GPNMB|10457|glycoprotein (transmembrane) nmb##AK303071|GPNMB|10457|glycoprotein (transmembrane) nmb##AK312279|GPNMB|10457|glycoprotein (transmembrane) nmb	0.974574	0.0	denovo_WM_7:-10:0.650	denovo_WM_7:-11:0.280
chr17	46094826	46094945	reg1007466.p1	4.515	+	AF343090 TSC_hg19_v1_chr17_+_46048487 AF110322 AK225274 BC072435 AB062433 BC009957	-46391	+	TSC_hg19_v1_chr17_+_46048471 AF217982 AK023722	-46416	+	AK223387 NM_176096 TSC_hg19_v1_chr17_+_46048452	-46453	+	TSC_hg19_v1_chr17_-_46115160 AB590254 DQ893053 DQ896301 AB047849 BC015924 AB037938 NM_016429	20265	-	TSC_hg19_v1_chr17_+_46125712 NM_003204 BC010623 AK090459	30814	+	AL833530 TSC_hg19_v1_chr17_+_46125724	30839	+	AF343090|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF110322|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK225274|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC072435|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AB062433|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##BC009957|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AF217982|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK023722|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##AK223387|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##NM_176096|CDK5RAP3|80279|CDK5 regulatory subunit associated protein 3##DQ893053|COPZ2|51226|coatomer protein complex, subunit zeta 2##DQ896301|COPZ2|51226|coatomer protein complex, subunit zeta 2##AB047849|COPZ2|51226|coatomer protein complex, subunit zeta 2##BC015924|COPZ2|51226|coatomer protein complex, subunit zeta 2##AB037938|COPZ2|51226|coatomer protein complex, subunit zeta 2##NM_016429|COPZ2|51226|coatomer protein complex, subunit zeta 2##NM_003204|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##BC010623|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AK090459|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1##AL833530|NFE2L1|4779|nuclear factor (erythroid-derived 2)-like 1	0.998512	0.0	denovo_WM_7:-31:0.974
chr3	9546013	9546125	reg1006602.p1	4.515	+	TSC_hg19_v1_chr3_+_9476522 AB384632	-69553	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-106495	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	-106708	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	49394	-	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	145073	+	TSC_hg19_v1_chr3_+_9691188 AK295891 BC050626 AK298846 AL713695	145120	+	AK092046|SETD5|55209|SET domain containing 5##NM_001080517|SETD5|55209|SET domain containing 5##BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14##AK295891|MTMR14|64419|myotubularin related protein 14##BC050626|MTMR14|64419|myotubularin related protein 14##AK298846|MTMR14|64419|myotubularin related protein 14##AL713695|MTMR14|64419|myotubularin related protein 14	0.989029	0.0	denovo_WM_7:3:0.269	denovo_WM_7:4:0.695
chr7	87495577	87495678	reg1009551.p1	4.515	+	AF345623 AF345624 AY425005 AY425006 M14758 AF345625 AK290159 NM_000927 AY425007 AY452673	-152980	-	TSC_hg19_v1_chr7_+_87257708 AK055233 NM_001134405 NM_001134406 NM_138290 BC022520 AK293607 AK294039	-237810	+	TSC_hg19_v1_chr7_-_87230197 AF016535 BC130424	-265348	-	TSC_hg19_v1_chr7_-_87505468 AK290848	9838	-	AB028069 AB028070 NM_006716	9916	+	TSC_hg19_v1_chr7_-_87505642 AK223020	10017	-	AY425005|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AY425006|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##M14758|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AF345625|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AK290159|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##NM_000927|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AY425007|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AK055233|RUNDC3B|154661|RUN domain containing 3B##NM_001134405|RUNDC3B|154661|RUN domain containing 3B##NM_001134406|RUNDC3B|154661|RUN domain containing 3B##NM_138290|RUNDC3B|154661|RUN domain containing 3B##BC022520|RUNDC3B|154661|RUN domain containing 3B##AK293607|RUNDC3B|154661|RUN domain containing 3B##AK294039|RUNDC3B|154661|RUN domain containing 3B##AF016535|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##BC130424|ABCB1|5243|ATP-binding cassette, sub-family B (MDR/TAP), member 1##AK290848|SLC25A40|55972|solute carrier family 25, member 40##AB028069|DBF4|10926|DBF4 homolog (S. cerevisiae)##AB028070|DBF4|10926|DBF4 homolog (S. cerevisiae)##NM_006716|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK223020|SLC25A40|55972|solute carrier family 25, member 40	0.185781	0.0	
chr14	25504391	25504496	reg1013504.p2	4.514	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-401025	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-425582	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-458997	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	14795	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1562545	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3731785	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.993876	0.0	denovo_WM_7:-74:0.248	denovo_WM_7:-75:0.248	denovo_WM_7:-76:0.248	denovo_WM_7:-77:0.248
chr15	63767422	63767571	reg1007924.p2	4.514	+	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	-93421	-	BT006656 DQ893188 DQ896511 EU831616 EU831623 EU831703 EU831708 AF051882 BC000278 AF037335 BC011691 TSC_hg19_v1_chr15_-_63674046 AK096845 BC023981	-93504	-	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	-197683	+	TSC_hg19_v1_chr15_+_63796791 AK314223	29286	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	29381	+	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	122083	+	AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##BT006656|CA12|771|carbonic anhydrase XII##DQ893188|CA12|771|carbonic anhydrase XII##DQ896511|CA12|771|carbonic anhydrase XII##EU831616|CA12|771|carbonic anhydrase XII##EU831623|CA12|771|carbonic anhydrase XII##EU831703|CA12|771|carbonic anhydrase XII##EU831708|CA12|771|carbonic anhydrase XII##AF051882|CA12|771|carbonic anhydrase XII##BC000278|CA12|771|carbonic anhydrase XII##AF037335|CA12|771|carbonic anhydrase XII##BC011691|CA12|771|carbonic anhydrase XII##AK096845|CA12|771|carbonic anhydrase XII##BC023981|CA12|771|carbonic anhydrase XII##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK314223|USP3|9960|ubiquitin specific peptidase 3##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22	0.998955	0.0	
chr20	43107980	43108130	reg1008638.p1	4.514	+	TSC_hg19_v1_chr20_+_43104525 BC003071 NM_001039199 NM_024331 AK314045 CR936621	-3508	+	TSC_hg19_v1_chr20_+_43030005 AB463726 HQ692860 HQ692869 X76930 AB307703	-78033	+	BC137539 BC137540 TSC_hg19_v1_chr20_+_43029974	-78073	+	CU675237 DQ896714 DQ893392 AK300618 AF112227 BC006088 TSC_hg19_v1_chr20_-_43150672	42577	-	TSC_hg19_v1_chr20_-_43150683 AF153979 U49188 AK222923	42623	-	AK295120 AK309993 TSC_hg19_v1_chr20_-_43150704 NM_006811 NM_198941	42652	-	BC003071|TTPAL|79183|tocopherol (alpha) transfer protein-like##NM_001039199|TTPAL|79183|tocopherol (alpha) transfer protein-like##NM_024331|TTPAL|79183|tocopherol (alpha) transfer protein-like##AK314045|TTPAL|79183|tocopherol (alpha) transfer protein-like##CR936621|TTPAL|79183|tocopherol (alpha) transfer protein-like##HQ692860|HNF4A|3172|hepatocyte nuclear factor 4, alpha##HQ692869|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X76930|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AB307703|HNF4A|3172|hepatocyte nuclear factor 4, alpha##BC137539|HNF4A|3172|hepatocyte nuclear factor 4, alpha##BC137540|HNF4A|3172|hepatocyte nuclear factor 4, alpha##DQ896714|SERINC3|10955|serine incorporator 3##DQ893392|SERINC3|10955|serine incorporator 3##AK300618|SERINC3|10955|serine incorporator 3##AF112227|SERINC3|10955|serine incorporator 3##BC006088|SERINC3|10955|serine incorporator 3##AF153979|SERINC3|10955|serine incorporator 3##U49188|SERINC3|10955|serine incorporator 3##AK222923|SERINC3|10955|serine incorporator 3##AK295120|SERINC3|10955|serine incorporator 3##AK309993|SERINC3|10955|serine incorporator 3##NM_006811|SERINC3|10955|serine incorporator 3##NM_198941|SERINC3|10955|serine incorporator 3	1.986247	0.0	denovo_WM_7:4:0.201	denovo_WM_7:5:0.331	denovo_WM_7:6:0.438	denovo_WM_7:-9:0.259	denovo_WM_7:-10:0.603
chr6	155479481	155479661	reg1008449.p1	4.514	+	NM_012454	-68149	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-424746	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-425017	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	58557	+	BC020838 NM_001001346	105575	+	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	156014	-	NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial	0.0686	0.0	
chr1	154412161	154412286	reg1011075.p1	4.513	+	TSC_hg19_v1_chr1_+_154378074 AK293013 X58298 AK312730 BC035327 AB527867 HQ258435 HQ258616	-34149	+	AK223582 BC132684 BC132686 TSC_hg19_v1_chr1_+_154377856	-34371	+	NM_000565 NM_001206866 NM_181359 X12830 BC089410 TSC_hg19_v1_chr1_+_154377822	-34473	+	BC143765 BC117210 NM_001010846	62301	-	BC044864 NM_001098475 NM_182499	62471	+	BC107057 AY112698 TSC_hg19_v1_chr1_-_154531132 AY948200 NM_017582	118886	-	AK293013|IL6R|3570|interleukin 6 receptor##X58298|IL6R|3570|interleukin 6 receptor##AK312730|IL6R|3570|interleukin 6 receptor##BC035327|IL6R|3570|interleukin 6 receptor##HQ258435|IL6R|3570|interleukin 6 receptor##HQ258616|IL6R|3570|interleukin 6 receptor##AK223582|IL6R|3570|interleukin 6 receptor##BC132684|IL6R|3570|interleukin 6 receptor##BC132686|IL6R|3570|interleukin 6 receptor##NM_000565|IL6R|3570|interleukin 6 receptor##NM_001206866|IL6R|3570|interleukin 6 receptor##NM_181359|IL6R|3570|interleukin 6 receptor##X12830|IL6R|3570|interleukin 6 receptor##BC089410|IL6R|3570|interleukin 6 receptor##BC143765|SHE|126669|Src homology 2 domain containing E##BC117210|SHE|126669|Src homology 2 domain containing E##NM_001010846|SHE|126669|Src homology 2 domain containing E##BC044864|TDRD10|126668|tudor domain containing 10##NM_001098475|TDRD10|126668|tudor domain containing 10##NM_182499|TDRD10|126668|tudor domain containing 10##BC107057|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY112698|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY948200|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##NM_017582|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1	0.0	0.0	
chr14	102305657	102305789	reg1011929.p2	4.513	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-29414	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	-29540	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-77537	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	125105	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	125238	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	247641	-	AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.985928	0.0	denovo_WM_7:-25:0.264	denovo_WM_7:-27:0.692
chr15	44160583	44160736	reg1010154.p1	4.513	+	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	-41472	+	AB463886 CU690792 DQ893389 DQ896709 TSC_hg19_v1_chr15_-_44116882 U04209 BC023557 BC050742 AK312867 NM_005926	-43801	-	TSC_hg19_v1_chr15_+_44092806 AK022435 AF161485 AF049613	-67857	+	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	326691	-	AK090572 AX746516 TSC_hg19_v1_chr15_-_44487470	326810	-	TSC_hg19_v1_chr15_+_44580919 NM_138423 NM_177974 BC012124	420240	+	NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##DQ893389|MFAP1|4236|microfibrillar-associated protein 1##DQ896709|MFAP1|4236|microfibrillar-associated protein 1##U04209|MFAP1|4236|microfibrillar-associated protein 1##BC023557|MFAP1|4236|microfibrillar-associated protein 1##BC050742|MFAP1|4236|microfibrillar-associated protein 1##AK312867|MFAP1|4236|microfibrillar-associated protein 1##NM_005926|MFAP1|4236|microfibrillar-associated protein 1##AK022435|C15orf63|25764|chromosome 15 open reading frame 63##AF161485|C15orf63|25764|chromosome 15 open reading frame 63##AF049613|C15orf63|25764|chromosome 15 open reading frame 63##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5##AK090572|FRMD5|84978|FERM domain containing 5##NM_138423|CASC4|113201|cancer susceptibility candidate 4##NM_177974|CASC4|113201|cancer susceptibility candidate 4##BC012124|CASC4|113201|cancer susceptibility candidate 4	0.98578	0.0	denovo_WM_7:83:0.521	denovo_WM_7:84:0.465
chr5	153589383	153589563	reg1011133.p2	4.513	+	TSC_hg19_v1_chr5_+_153570292 BC050333 NM_198321 AK127135 AB078145 AB527381 AJ505950 AK074132	-19115	+	TSC_hg19_v1_chr5_+_153418558 AK315573 BC026244	-170913	+	AK296468 NM_001135037 NM_001242336 NM_005927 TSC_hg19_v1_chr5_+_153418526	-170949	+	TSC_hg19_v1_chr5_-_153825380 BC042059 AK095428	235894	-	TSC_hg19_v1_chr5_+_153825535 AK021588 NM_001131062 NM_001131063 NM_024632	236046	+	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	236137	+	BC050333|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##NM_198321|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK127135|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AB078145|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AJ505950|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK074132|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK315573|MFAP3|4238|microfibrillar-associated protein 3##BC026244|MFAP3|4238|microfibrillar-associated protein 3##AK296468|MFAP3|4238|microfibrillar-associated protein 3##NM_001135037|MFAP3|4238|microfibrillar-associated protein 3##NM_001242336|MFAP3|4238|microfibrillar-associated protein 3##NM_005927|MFAP3|4238|microfibrillar-associated protein 3##BC042059|FLJ38109|386627|uncharacterized LOC386627##AK095428|FLJ38109|386627|uncharacterized LOC386627##AK021588|SAP30L|79685|SAP30-like##NM_001131062|SAP30L|79685|SAP30-like##NM_001131063|SAP30L|79685|SAP30-like##NM_024632|SAP30L|79685|SAP30-like##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like	0.0	0.0	
chr10	6094607	6094748	reg1012552.p2	4.512	+	AF035279 BC107777 BC065506 NM_001243539	-74663	-	CR542023 HQ401283 AB590464 BC121140 AK304211 BC074726 BC121141 U31628 NM_002189 NM_172200	-75164	-	AF380349 NM_032807	-158329	+	AB528862 AK223313 K03122 X01057 AK313847 NM_000417	9545	-	TSC_hg19_v1_chr10_+_6130954 NM_032905	36272	+	TSC_hg19_v1_chr10_+_6131024 AF542550 AK314952	36322	+	AF035279|IL15RA|3601|interleukin 15 receptor, alpha##BC107777|IL15RA|3601|interleukin 15 receptor, alpha##BC065506|IL15RA|3601|interleukin 15 receptor, alpha##NM_001243539|IL15RA|3601|interleukin 15 receptor, alpha##CR542023|IL15RA|3601|interleukin 15 receptor, alpha##HQ401283|IL15RA|3601|interleukin 15 receptor, alpha##BC121140|IL15RA|3601|interleukin 15 receptor, alpha##AK304211|IL15RA|3601|interleukin 15 receptor, alpha##BC074726|IL15RA|3601|interleukin 15 receptor, alpha##BC121141|IL15RA|3601|interleukin 15 receptor, alpha##U31628|IL15RA|3601|interleukin 15 receptor, alpha##NM_002189|IL15RA|3601|interleukin 15 receptor, alpha##NM_172200|IL15RA|3601|interleukin 15 receptor, alpha##AF380349|FBXO18|84893|F-box protein, helicase, 18##NM_032807|FBXO18|84893|F-box protein, helicase, 18##AK223313|IL2RA|3559|interleukin 2 receptor, alpha##K03122|IL2RA|3559|interleukin 2 receptor, alpha##X01057|IL2RA|3559|interleukin 2 receptor, alpha##AK313847|IL2RA|3559|interleukin 2 receptor, alpha##NM_000417|IL2RA|3559|interleukin 2 receptor, alpha##NM_032905|RBM17|84991|RNA binding motif protein 17##AF542550|RBM17|84991|RNA binding motif protein 17##AK314952|RBM17|84991|RNA binding motif protein 17	0.067499	0.0	
chr11	62408369	62408435	reg1005274.p2	4.512	+	TSC_hg19_v1_chr11_-_62389612 AK075166 NM_012200	-18783	-	TSC_hg19_v1_chr11_-_62389457 AJ005865 CU675855 BC071961 BC007906 AB009598 BC019832 AK297970 AK310200 AK316228	-18985	-	NM_000327 AK313674 DQ426890	-28128	+	TSC_hg19_v1_chr11_-_62414075 D42041 AJ000332 BC065266	5667	-	TSC_hg19_v1_chr11_-_62414079 AK299819	5678	-	TSC_hg19_v1_chr11_-_62414083 AK295806 AK314370	5681	-	AK075166|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##NM_012200|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AJ005865|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##BC071961|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##BC007906|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AB009598|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##BC019832|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AK297970|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AK310200|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##AK316228|B3GAT3|26229|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)##NM_000327|ROM1|6094|retinal outer segment membrane protein 1##AK313674|ROM1|6094|retinal outer segment membrane protein 1##DQ426890|ROM1|6094|retinal outer segment membrane protein 1##D42041|GANAB|23193|glucosidase, alpha; neutral AB##AJ000332|GANAB|23193|glucosidase, alpha; neutral AB##BC065266|GANAB|23193|glucosidase, alpha; neutral AB##AK299819|GANAB|23193|glucosidase, alpha; neutral AB##AK295806|GANAB|23193|glucosidase, alpha; neutral AB##AK314370|GANAB|23193|glucosidase, alpha; neutral AB	0.998675	0.0	
chr14	21774142	21774273	reg1018200.p1	4.512	+	AJ417067 NM_020366	-18072	+	M16342 BC108658 BX247992 BC089438 BC008364 TSC_hg19_v1_chr14_-_21737587 BC003394 BC071943 BX247961 M29063 AB209527 AK223517 BC066932 AK298906 AK312382 D28382 AK297482 AK299923 AK312338 BC103758 AK292619 BC007052 BC008423 AL833432 BC092433 AK225032 AK302213 NM_001077442 NM_001077443 NM_004500 NM_031314	-36636	-	NM_001004731 BC137304 BC137305	-150005	-	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	77915	-	BC000565 BC014046 TSC_hg19_v1_chr14_-_21852177 BC021561 BC111402	77962	-	AK024072 NM_007192	78217	-	AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##M16342|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC108658|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247992|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC089438|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008364|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC003394|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC071943|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247961|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##M29063|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AB209527|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK223517|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC066932|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK298906|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##D28382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK297482|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK299923|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312338|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC103758|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK292619|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC007052|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008423|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AL833432|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC092433|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK225032|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK302213|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077442|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077443|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_004500|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_031314|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001004731|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137304|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137305|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC000565|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC014046|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC111402|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK024072|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##NM_007192|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)	2.027266	0.0	denovo_WM_7:72:0.210	denovo_WM_7:94:0.216
chr20	35093252	35093414	reg1012481.p1	4.512	+	NM_183006 BC153874 TSC_hg19_v1_chr20_+_35090197 BC108706	-3158	+	TSC_hg19_v1_chr20_+_35089870 NM_001042486 AK001681	-3464	+	NM_014902	-97890	+	TSC_hg19_v1_chr20_+_35169892 NM_006097 NM_181526	76553	+	TSC_hg19_v1_chr20_+_35169921 D82057 AK130879 AK097235 BC002648 AF176042 AF176043	76590	+	BC039668 TSC_hg19_v1_chr20_-_35201701	108358	-	NM_183006|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC153874|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##BC108706|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_001042486|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##AK001681|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_014902|DLGAP4|22839|discs, large (Drosophila) homolog-associated protein 4##NM_006097|MYL9|10398|myosin, light chain 9, regulatory##NM_181526|MYL9|10398|myosin, light chain 9, regulatory##D82057|MYL9|10398|myosin, light chain 9, regulatory##AK130879|MYL9|10398|myosin, light chain 9, regulatory##AK097235|MYL9|10398|myosin, light chain 9, regulatory##BC002648|MYL9|10398|myosin, light chain 9, regulatory##AF176042|MYL9|10398|myosin, light chain 9, regulatory##AF176043|MYL9|10398|myosin, light chain 9, regulatory	0.981578	0.0	denovo_WM_7:-71:0.873
chr22	29194227	29194356	reg1012173.p2	4.512	+	TSC_hg19_v1_chr22_+_29168732 AK091133 AX746797 AK295140 CR456461 AB528096 CU013012 CU013300 CU691050	-25512	+	TSC_hg19_v1_chr22_+_29168718 BC065549 BC053874 BC040488 AK302925	-25592	+	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	-25647	+	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	2200	-	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	2276	-	TSC_hg19_v1_chr22_+_29196668 AF086143	2392	+	AK091133|CCDC117|150275|coiled-coil domain containing 117##AK295140|CCDC117|150275|coiled-coil domain containing 117##CR456461|CCDC117|150275|coiled-coil domain containing 117##BC065549|CCDC117|150275|coiled-coil domain containing 117##BC053874|CCDC117|150275|coiled-coil domain containing 117##BC040488|CCDC117|150275|coiled-coil domain containing 117##AK302925|CCDC117|150275|coiled-coil domain containing 117##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1	0.996941	0.0	denovo_WM_7:6:0.841
chr6	105925380	105925555	reg1009946.p1	4.512	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-74472	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-74509	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-74621	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	608729	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	608768	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	621337	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.995908	0.0	denovo_WM_7:-3:0.879
chr6	116732103	116732283	reg1000756.p4	4.512	+	TSC_hg19_v1_chr6_-_116692863 AK298559 AK316303	-39324	-	TSC_hg19_v1_chr6_+_116692109 NM_013352 AF098066	-40050	+	BC039245 NM_001080976 BC043526	-130872	+	NM_001010919	50362	+	BC032556 NM_153711 AK094140 AK315572	100628	+	AK300309 AY358252 NM_153036 BC057769 AK056801	118015	+	AK298559|LOC100287467|100287467|uncharacterized LOC100287467##AK316303|LOC100287467|100287467|uncharacterized LOC100287467##NM_013352|DSE|29940|dermatan sulfate epimerase##AF098066|DSE|29940|dermatan sulfate epimerase##BC039245|DSE|29940|dermatan sulfate epimerase##NM_001080976|DSE|29940|dermatan sulfate epimerase##BC043526|DSE|29940|dermatan sulfate epimerase##NM_001010919|FAM26F|441168|family with sequence similarity 26, member F##BC032556|FAM26E|254228|family with sequence similarity 26, member E##NM_153711|FAM26E|254228|family with sequence similarity 26, member E##AK094140|FAM26E|254228|family with sequence similarity 26, member E##AK315572|FAM26E|254228|family with sequence similarity 26, member E##AK300309|FAM26D|221301|family with sequence similarity 26, member D##AY358252|FAM26D|221301|family with sequence similarity 26, member D##NM_153036|FAM26D|221301|family with sequence similarity 26, member D##BC057769|FAM26D|221301|family with sequence similarity 26, member D##AK056801|FAM26D|221301|family with sequence similarity 26, member D	0.0	0.0	
chr8	138948393	138948534	reg1007446.p1	4.512	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-2478262	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-2478805	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-3223189	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	560643	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	977781	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	1766819	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	1.266724	0.0	denovo_WM_7:11:0.284	denovo_WM_7:26:0.272
chr11	118972565	118972704	reg1006008.p1	4.511	+	AK225994 BC000325 BC047771 BC008817 TSC_hg19_v1_chr11_-_118972586 AK301973 AK312783	-76	-	TSC_hg19_v1_chr11_-_118966176 NM_002105 X14850	-6459	-	CR457079 AB464561 BC013416 BC004915 BC011694 TSC_hg19_v1_chr11_-_118966173	-6496	-	NM_001382 AK095718	183	-	TSC_hg19_v1_chr11_+_118978097 AB094094 AK025223 NM_014807	5493	+	TSC_hg19_v1_chr11_+_118978191 BC022219	5549	+	AK225994|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC000325|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC047771|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK301973|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK312783|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##NM_002105|H2AFX|3014|H2A histone family, member X##X14850|H2AFX|3014|H2A histone family, member X##CR457079|H2AFX|3014|H2A histone family, member X##BC013416|H2AFX|3014|H2A histone family, member X##BC004915|H2AFX|3014|H2A histone family, member X##BC011694|H2AFX|3014|H2A histone family, member X##NM_001382|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK095718|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AB094094|C2CD2L|9854|C2CD2-like##AK025223|C2CD2L|9854|C2CD2-like##NM_014807|C2CD2L|9854|C2CD2-like##BC022219|C2CD2L|9854|C2CD2-like	0.0	0.0	
chr1	179288225	179288405	reg1012149.p1	4.511	+	TSC_hg19_v1_chr1_+_179262970 BC028940	-25327	+	AK026611 TSC_hg19_v1_chr1_+_179262936 AL833625	-25372	+	TSC_hg19_v1_chr1_+_179262931 AK300551 AK290659 AK294047	-25406	+	BX647935 NM_144696 AK302972	46549	+	AJ279254 NM_014625 BC029141	256761	-	AK126889 NM_001199091 NM_001199085 NM_173533	272436	+	BC028940|SOAT1|6646|sterol O-acyltransferase 1##AK026611|SOAT1|6646|sterol O-acyltransferase 1##AL833625|SOAT1|6646|sterol O-acyltransferase 1##AK300551|SOAT1|6646|sterol O-acyltransferase 1##AK290659|SOAT1|6646|sterol O-acyltransferase 1##AK294047|SOAT1|6646|sterol O-acyltransferase 1##BX647935|AXDND1|126859|axonemal dynein light chain domain containing 1##NM_144696|AXDND1|126859|axonemal dynein light chain domain containing 1##AK302972|AXDND1|126859|axonemal dynein light chain domain containing 1##AJ279254|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##NM_014625|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##BC029141|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##AK126889|TDRD5|163589|tudor domain containing 5##NM_001199091|TDRD5|163589|tudor domain containing 5##NM_001199085|TDRD5|163589|tudor domain containing 5##NM_173533|TDRD5|163589|tudor domain containing 5	0.998384	0.0	denovo_WM_7:95:0.229	denovo_WM_7:96:0.229	denovo_WM_7:97:0.229	denovo_WM_7:98:0.229
chr16	14093292	14093358	reg1010471.p2	4.511	+	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	-79294	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-1097857	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-1195606	-	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	71761	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	187193	+	BC047761 TSC_hg19_v1_chr16_+_14294209	200873	+	BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##BC047761|MKL2|57496|MKL/myocardin-like 2	1.963089	0.0	denovo_WM_7:40:0.808	denovo_WM_7:58:0.720
chr3	196189771	196189951	reg1011230.p1	4.511	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-30528	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-30562	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-30578	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	40717	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	52352	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	105529	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.0	0.0	
chr7	32928239	32928358	reg1010293.p1	4.511	+	TSC_hg19_v1_chr7_+_32767741 AK094370 BC126382 BC126384	-160560	+	TSC_hg19_v1_chr7_+_32535168 AK090619 AX746537 NM_015060 BC027724 CU693288	-393068	+	TSC_hg19_v1_chr7_+_32535132 AL833560	-393203	+	AK292802 BC047107 TSC_hg19_v1_chr7_-_32931241	2963	-	TSC_hg19_v1_chr7_-_32931372 BC037887	3071	-	TSC_hg19_v1_chr7_-_32931481 NM_015483	3153	-	AK094370|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126382|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126384|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##AK090619|AVL9|23080|AVL9 homolog (S. cerevisiase)##NM_015060|AVL9|23080|AVL9 homolog (S. cerevisiase)##BC027724|AVL9|23080|AVL9 homolog (S. cerevisiase)##AL833560|AVL9|23080|AVL9 homolog (S. cerevisiase)##AK292802|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC047107|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC037887|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##NM_015483|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2	0.995095	0.0	
chr8	110367579	110367678	reg1015026.p1	4.511	+	TSC_hg19_v1_chr8_+_110346575 NM_001193557 NM_020189 AK095651 AK316560 AK000487 AK290752 BC051878 BC007870	-21035	+	AK301278 TSC_hg19_v1_chr8_-_110346317 BC000967 AK027897 BC043406 AK315006 BC031258 NM_032869 AF283301	-21257	-	AF283302 AK311583 AF521133 NM_001128211 AK307663	-25494	-	AY219181 NM_177531 BC093096 AK128617	7101	+	TSC_hg19_v1_chr8_+_110551942 NM_198120 AK290651 BC017729	184357	+	NM_004215 BC005249 BC022506 AK308950 AB007619 AF006265 AY515724	184782	+	NM_001193557|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##NM_020189|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK095651|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK316560|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK000487|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK290752|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##BC051878|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##BC007870|ENY2|56943|enhancer of yellow 2 homolog (Drosophila)##AK301278|NUDCD1|84955|NudC domain containing 1##BC000967|NUDCD1|84955|NudC domain containing 1##AK027897|NUDCD1|84955|NudC domain containing 1##BC043406|NUDCD1|84955|NudC domain containing 1##AK315006|NUDCD1|84955|NudC domain containing 1##BC031258|NUDCD1|84955|NudC domain containing 1##NM_032869|NUDCD1|84955|NudC domain containing 1##AF283301|NUDCD1|84955|NudC domain containing 1##AF283302|NUDCD1|84955|NudC domain containing 1##AK311583|NUDCD1|84955|NudC domain containing 1##AF521133|NUDCD1|84955|NudC domain containing 1##NM_001128211|NUDCD1|84955|NudC domain containing 1##AK307663|NUDCD1|84955|NudC domain containing 1##AY219181|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_177531|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##BC093096|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_198120|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK290651|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC017729|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##NM_004215|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC005249|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC022506|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK308950|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AB007619|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AF006265|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY515724|EBAG9|9166|estrogen receptor binding site associated, antigen, 9	1.989926	0.0	denovo_WM_7:-61:0.972	denovo_WM_7:-76:0.982
chr8	73861695	73861786	reg1011747.p2	4.511	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-412097	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-873906	-	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-1105032	-	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	59372	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	143702	-	BC150551 BC150552 NM_001243237	309996	-	AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301	0.0	0.0	
chr16	89638864	89638969	reg1011399.p1	4.510	+	TSC_hg19_v1_chr16_+_89627089 BC093063 AK026501 AK093246 AK130964 AK290893 AK294655 AK308545 BC066320 D28432 X64707 AK025405 AK127579 AK130963 AK297198 BC007345 BC004954 BC006179 BC063378 BC007805 BC013078 BC014167 BC027463 BC010994 BC000851 BC020804 NM_033251 BC007563	-11809	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	-11851	+	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	-64102	+	TSC_hg19_v1_chr16_+_89642221 AJ133798 NM_014427 NM_153636 BC064577 BC035334 CU690070 AB463543	3291	+	NM_001128141	40799	+	AK309577 TSC_hg19_v1_chr16_+_89680058	41092	+	BC093063|RPL13|6137|ribosomal protein L13##AK026501|RPL13|6137|ribosomal protein L13##AK130964|RPL13|6137|ribosomal protein L13##AK290893|RPL13|6137|ribosomal protein L13##AK294655|RPL13|6137|ribosomal protein L13##AK308545|RPL13|6137|ribosomal protein L13##BC066320|RPL13|6137|ribosomal protein L13##D28432|RPL13|6137|ribosomal protein L13##X64707|RPL13|6137|ribosomal protein L13##AK025405|RPL13|6137|ribosomal protein L13##AK127579|RPL13|6137|ribosomal protein L13##AK130963|RPL13|6137|ribosomal protein L13##AK297198|RPL13|6137|ribosomal protein L13##BC007345|RPL13|6137|ribosomal protein L13##BC004954|RPL13|6137|ribosomal protein L13##BC006179|RPL13|6137|ribosomal protein L13##BC063378|RPL13|6137|ribosomal protein L13##BC007805|RPL13|6137|ribosomal protein L13##BC013078|RPL13|6137|ribosomal protein L13##BC014167|RPL13|6137|ribosomal protein L13##BC027463|RPL13|6137|ribosomal protein L13##BC010994|RPL13|6137|ribosomal protein L13##BC000851|RPL13|6137|ribosomal protein L13##BC020804|RPL13|6137|ribosomal protein L13##NM_033251|RPL13|6137|ribosomal protein L13##BC007563|RPL13|6137|ribosomal protein L13##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##AJ133798|CPNE7|27132|copine VII##NM_014427|CPNE7|27132|copine VII##NM_153636|CPNE7|27132|copine VII##BC064577|CPNE7|27132|copine VII##BC035334|CPNE7|27132|copine VII##NM_001128141|DPEP1|1800|dipeptidase 1 (renal)##AK309577|DPEP1|1800|dipeptidase 1 (renal)	0.0	0.0	
chr19	6801556	6801702	reg1011209.p1	4.510	+	TSC_hg19_v1_chr19_+_6772811 AB590871	-28821	+	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	-28905	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-34122	-	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	85968	+	NM_001136507	228964	+	NM_001164419	238554	-	NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001136507|MBD3L5|284428|methyl-CpG binding domain protein 3-like 5##NM_001164419|MBD3L4|653656|methyl-CpG binding domain protein 3-like 4	0.0	0.0	
chr1	23979656	23979750	reg1012979.p2	4.509	+	NM_002167 X69111	-93419	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-93719	-	L22846 NM_004091	-121992	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	38577	+	TSC_hg19_v1_chr1_+_24018295 BC018970	38596	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	90201	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.996928	0.0	
chr20	54987136	54987264	reg1013159.p2	4.509	+	TSC_hg19_v1_chr20_+_54967709 AK293182 AK312774 NM_001033522 BC001011 BC007425	-19483	+	TSC_hg19_v1_chr20_+_54967593 NM_001324 L02547	-19603	+	TSC_hg19_v1_chr20_+_54967443 NM_001033521 AK307144	-19776	+	AJ276678 NM_001164116 AX721200 AK308057 NM_001164114 NM_001164115 NM_020356 AK027760 BC027951 AK314653 AK295613	107	+	NM_016407 TSC_hg19_v1_chr20_+_55043664	56459	+	TSC_hg19_v1_chr20_+_55043682 AF161513 AK314563	56484	+	AK293182|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##AK312774|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001033522|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##BC001011|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##BC007425|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001324|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##L02547|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001033521|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##AJ276678|CASS4|57091|Cas scaffolding protein family member 4##NM_001164116|CASS4|57091|Cas scaffolding protein family member 4##AK308057|CASS4|57091|Cas scaffolding protein family member 4##NM_001164114|CASS4|57091|Cas scaffolding protein family member 4##NM_001164115|CASS4|57091|Cas scaffolding protein family member 4##NM_020356|CASS4|57091|Cas scaffolding protein family member 4##AK027760|CASS4|57091|Cas scaffolding protein family member 4##BC027951|CASS4|57091|Cas scaffolding protein family member 4##AK314653|CASS4|57091|Cas scaffolding protein family member 4##AK295613|CASS4|57091|Cas scaffolding protein family member 4##NM_016407|C20orf43|51507|chromosome 20 open reading frame 43##AF161513|C20orf43|51507|chromosome 20 open reading frame 43##AK314563|C20orf43|51507|chromosome 20 open reading frame 43	0.262178	0.0	
chr22	36480095	36480204	reg1010697.p1	4.509	+	AY072786 DQ778625 TSC_hg19_v1_chr22_-_36424553 AK055213 NM_001082578 NM_001082579	-55610	-	TSC_hg19_v1_chr22_-_36236476 AF229058 AL009266 AK314632 BC013115 BC025281 AK291460 NM_001031695 NM_001082576 NM_001082577 NM_014309	-243624	-	CR456559 TSC_hg19_v1_chr22_-_36236341	-243809	-	BC042918 BC038352 AK025349 AF070675 BC070144 AF305227 BC050596 AY014902 AY014903 AY014904 AY014905 NM_145640	76729	-	AY014906 AY014907 NM_145641 NM_145642	82075	-	AK290466 BC006276 AK313637 AK311506 AY014914 AY014915 NM_030643 NM_145660	120669	-	AY072786|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##DQ778625|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK055213|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082578|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082579|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AF229058|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AL009266|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK314632|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC013115|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC025281|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK291460|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001031695|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082576|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082577|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_014309|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##CR456559|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC042918|APOL3|80833|apolipoprotein L, 3##BC038352|APOL3|80833|apolipoprotein L, 3##AK025349|APOL3|80833|apolipoprotein L, 3##AF070675|APOL3|80833|apolipoprotein L, 3##AF305227|APOL3|80833|apolipoprotein L, 3##BC050596|APOL3|80833|apolipoprotein L, 3##AY014902|APOL3|80833|apolipoprotein L, 3##AY014903|APOL3|80833|apolipoprotein L, 3##AY014904|APOL3|80833|apolipoprotein L, 3##AY014905|APOL3|80833|apolipoprotein L, 3##NM_145640|APOL3|80833|apolipoprotein L, 3##AY014906|APOL3|80833|apolipoprotein L, 3##AY014907|APOL3|80833|apolipoprotein L, 3##NM_145641|APOL3|80833|apolipoprotein L, 3##NM_145642|APOL3|80833|apolipoprotein L, 3##AK290466|APOL4|80832|apolipoprotein L, 4##BC006276|APOL4|80832|apolipoprotein L, 4##AK313637|APOL4|80832|apolipoprotein L, 4##AK311506|APOL4|80832|apolipoprotein L, 4##AY014914|APOL4|80832|apolipoprotein L, 4##AY014915|APOL4|80832|apolipoprotein L, 4##NM_030643|APOL4|80832|apolipoprotein L, 4##NM_145660|APOL4|80832|apolipoprotein L, 4	0.0	0.0	
chr6	12090894	12091074	reg1013320.p2	4.509	+	NM_002114	-78261	+	NM_001143948 NM_032744	-311705	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-552486	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	199609	+	TSC_hg19_v1_chr6_+_12514301 D28417	423318	+	AK295263 TSC_hg19_v1_chr6_+_12716998	625959	+	NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1	0.999326	0.0	
chr9	33424491	33424590	reg1003222.p1	4.509	+	AK297860 TSC_hg19_v1_chr9_-_33402631 AK301949	-21928	-	BC062701 BC119672 BC119673 AB006190 NM_001170 TSC_hg19_v1_chr9_-_33402526	-22025	-	AK294028 TSC_hg19_v1_chr9_-_33402480 AK297885	-22062	-	BT007199 CR541991 CR542025 TSC_hg19_v1_chr9_-_33447592 AJ493597 BC013566 AB001325 AK292208 AK303206 AK315760 AK095363 NM_004925	23046	-	AK026193 TSC_hg19_v1_chr9_-_33465258	40684	-	TSC_hg19_v1_chr9_-_33473861 BC030139	49313	-	AK297860|AQP7|364|aquaporin 7##AK301949|AQP7|364|aquaporin 7##BC062701|AQP7|364|aquaporin 7##BC119672|AQP7|364|aquaporin 7##BC119673|AQP7|364|aquaporin 7##AB006190|AQP7|364|aquaporin 7##NM_001170|AQP7|364|aquaporin 7##AK294028|AQP7|364|aquaporin 7##AK297885|AQP7|364|aquaporin 7##BT007199|AQP3|360|aquaporin 3 (Gill blood group)##CR541991|AQP3|360|aquaporin 3 (Gill blood group)##CR542025|AQP3|360|aquaporin 3 (Gill blood group)##AJ493597|AQP3|360|aquaporin 3 (Gill blood group)##BC013566|AQP3|360|aquaporin 3 (Gill blood group)##AB001325|AQP3|360|aquaporin 3 (Gill blood group)##AK292208|AQP3|360|aquaporin 3 (Gill blood group)##AK303206|AQP3|360|aquaporin 3 (Gill blood group)##AK315760|AQP3|360|aquaporin 3 (Gill blood group)##AK095363|AQP3|360|aquaporin 3 (Gill blood group)##NM_004925|AQP3|360|aquaporin 3 (Gill blood group)##AK026193|NOL6|65083|nucleolar protein family 6 (RNA-associated)##BC030139|NOL6|65083|nucleolar protein family 6 (RNA-associated)	0.732769	0.0	
chr14	103072797	103072963	reg1007232.p1	4.508	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-13719	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-13882	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-96766	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	170939	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	171020	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	316118	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.992528	0.0	denovo_WM_7:92:0.496	denovo_WM_7:93:0.496
chr16	71731654	71731742	reg1011974.p2	4.508	+	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	-71601	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	-120726	-	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-171605	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	17002	-	TSC_hg19_v1_chr16_-_71757789 AK124678	26066	-	AL110198 TSC_hg19_v1_chr16_-_71782208	50491	-	BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AK124678|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AL110198|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit	1.911482	0.0	denovo_WM_7:26:0.398	denovo_WM_7:27:0.344	denovo_WM_7:61:0.331	denovo_WM_7:62:0.331	denovo_WM_7:63:0.331
chr17	63564352	63564532	reg1004923.p3	4.508	+	CR933657 TSC_hg19_v1_chr17_-_63557767	-6674	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	-6763	-	BC006295 TSC_hg19_v1_chr17_-_63556453	-7967	-	BC029524 NM_001037325	258218	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	623739	-	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	661083	-	CR933657|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##BC006295|AXIN2|8313|axin 2##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)	0.993768	0.0	denovo_WM_7:-54:0.813
chr17	74749722	74749846	reg1010419.p1	4.508	+	TSC_hg19_v1_chr17_+_74734111 AK308058 AF015184 AK000233	-15631	+	AF015183 NM_001242532 NM_001242533 NM_001242535 NM_001242536 NM_001242537 NM_024311	-16259	+	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	-16328	-	TSC_hg19_v1_chr17_+_74864556 AK057861 AB235153 BC041577 NM_001199172 NM_144677 BC062354	114882	+	AB114297 NM_198955 BC144361	118976	+	NM_001204408 BX648413 TSC_hg19_v1_chr17_+_75084834 FM995495 FM995497 FM995498 FN357117 FN357118 FN357119 FN357120 FN357121 FN357125 FN357122 FN357123 FN357126	335013	+	AK308058|MFSD11|79157|major facilitator superfamily domain containing 11##AF015184|MFSD11|79157|major facilitator superfamily domain containing 11##AK000233|MFSD11|79157|major facilitator superfamily domain containing 11##AF015183|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242532|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242533|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242535|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242536|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242537|MFSD11|79157|major facilitator superfamily domain containing 11##NM_024311|MFSD11|79157|major facilitator superfamily domain containing 11##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2##AB235153|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC041577|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001199172|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_144677|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC062354|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##AB114297|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_198955|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC144361|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001204408|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BX648413|LINC00338|654434|long intergenic non-protein coding RNA 338##FM995495|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FM995497|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FM995498|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FN357117|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357118|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357121|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357125|LINC00338|654434|long intergenic non-protein coding RNA 338	1.082859	0.0	denovo_WM_7:-5:0.447	denovo_WM_7:-6:0.447
chr19	40671610	40671761	reg1012312.p2	4.508	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	-74873	-	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-109559	-	NM_178544 AK122968 AK292528 BC045649	-168700	+	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	25961	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	52603	-	AK023327 AK301833 NM_024877	60894	-	AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B##AK023327|CNTD2|79935|cyclin N-terminal domain containing 2##AK301833|CNTD2|79935|cyclin N-terminal domain containing 2##NM_024877|CNTD2|79935|cyclin N-terminal domain containing 2	0.0	0.406373	CTCF.p2:-37:0.406
chr8	54335358	54335492	reg1012779.p2	4.508	+	BC099912 AK310407 AY168006 NM_000912 AY466378	-171213	-	BC069117 BC107101 NM_005285	-482958	+	AB059622 TSC_hg19_v1_chr8_-_53626996 NM_001083617 NM_014781	-708412	-	AK098305 NM_213620 BC014862 AF125105 TSC_hg19_v1_chr8_-_54755806 BC007421 BC007454 BC025275 AF112204 AF132945 AK308204	420254	-	AK022345 TSC_hg19_v1_chr8_-_54755834	420402	-	AF113222 TSC_hg19_v1_chr8_-_54755840 NM_015941 NM_213619 AK303229	420427	-	BC099912|OPRK1|4986|opioid receptor, kappa 1##AK310407|OPRK1|4986|opioid receptor, kappa 1##AY168006|OPRK1|4986|opioid receptor, kappa 1##NM_000912|OPRK1|4986|opioid receptor, kappa 1##AY466378|OPRK1|4986|opioid receptor, kappa 1##BC069117|NPBWR1|2831|neuropeptides B/W receptor 1##BC107101|NPBWR1|2831|neuropeptides B/W receptor 1##NM_005285|NPBWR1|2831|neuropeptides B/W receptor 1##AB059622|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_001083617|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_014781|RB1CC1|9821|RB1-inducible coiled-coil 1##AK098305|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213620|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC014862|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF125105|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007421|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007454|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC025275|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF112204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF132945|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK308204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK022345|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF113222|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_015941|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213619|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK303229|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	2.997908	0.0	denovo_WM_7:12:0.487	denovo_WM_7:13:0.256	denovo_WM_7:27:0.274	denovo_WM_7:28:0.346	denovo_WM_7:29:0.271	denovo_WM_7:43:0.260	denovo_WM_7:44:0.493
chr9	4762272	4762399	reg1009920.p1	4.508	+	AF183419 NM_001199853	-20293	-	NM_001199855	-20537	-	TSC_hg19_v1_chr9_-_4741309 NM_001199852 NM_016282	-20982	-	NM_005772 TSC_hg19_v1_chr9_+_4792833	30498	+	TSC_hg19_v1_chr9_+_4792936 AK022904 BC001025 AK225872	30588	+	TSC_hg19_v1_chr9_+_4792995 AJ276894 EU831474 EU831561 AF067172	30708	+	AF183419|AK3|50808|adenylate kinase 3##NM_001199853|AK3|50808|adenylate kinase 3##NM_001199855|AK3|50808|adenylate kinase 3##NM_001199852|AK3|50808|adenylate kinase 3##NM_016282|AK3|50808|adenylate kinase 3##NM_005772|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK022904|RCL1|10171|RNA terminal phosphate cyclase-like 1##BC001025|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK225872|RCL1|10171|RNA terminal phosphate cyclase-like 1##AJ276894|RCL1|10171|RNA terminal phosphate cyclase-like 1##EU831474|RCL1|10171|RNA terminal phosphate cyclase-like 1##EU831561|RCL1|10171|RNA terminal phosphate cyclase-like 1##AF067172|RCL1|10171|RNA terminal phosphate cyclase-like 1	0.017744	0.0	
chr10	29948655	29948788	reg1015247.p2	4.507	+	AF109135 NM_021738 TSC_hg19_v1_chr10_-_29923901	-24814	-	TSC_hg19_v1_chr10_-_29923841 BC057241 BC070247	-24860	-	BX648589 TSC_hg19_v1_chr10_-_29754623	-194170	-	TSC_hg19_v1_chr10_-_30024866 AF051850 NM_003174	76043	-	TSC_hg19_v1_chr10_-_30025865 AK307640	77185	-	TSC_hg19_v1_chr10_-_30316350 BC047548	367710	-	AF109135|SVIL|6840|supervillin##NM_021738|SVIL|6840|supervillin##BX648589|SVIL|6840|supervillin##AF051850|SVIL|6840|supervillin##NM_003174|SVIL|6840|supervillin##AK307640|SVIL|6840|supervillin##BC047548|KIAA1462|57608|KIAA1462	0.0	0.0	
chr14	50102691	50102813	reg1015661.p1	4.507	+	TSC_hg19_v1_chr14_-_50101963 BX248765 NM_001083908 NM_018139	-798	-	FJ158843 TSC_hg19_v1_chr14_-_50101912	-860	-	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	-2056	-	AB590929 HQ258453 TSC_hg19_v1_chr14_-_50154933 BC112962 AK293163 AK314963 AF036899 BX248064 BC126218 BC126220	52220	-	NM_001197330 NM_001197331 NM_002692 TSC_hg19_v1_chr14_-_50155123	52367	-	BC101595 BC101597 BC143596 BC143597 NM_172193 AK098735 BC031270 AF111806 AK127202	57110	+	BX248765|DNAAF2|55172|dynein, axonemal, assembly factor 2##NM_001083908|DNAAF2|55172|dynein, axonemal, assembly factor 2##NM_018139|DNAAF2|55172|dynein, axonemal, assembly factor 2##FJ158843|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2##HQ258453|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC112962|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK293163|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK314963|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AF036899|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BX248064|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC126218|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC126220|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_001197330|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_001197331|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_002692|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC101595|KLHDC1|122773|kelch domain containing 1##BC101597|KLHDC1|122773|kelch domain containing 1##BC143596|KLHDC1|122773|kelch domain containing 1##BC143597|KLHDC1|122773|kelch domain containing 1##NM_172193|KLHDC1|122773|kelch domain containing 1##BC031270|KLHDC1|122773|kelch domain containing 1##AF111806|KLHDC1|122773|kelch domain containing 1##AK127202|KLHDC1|122773|kelch domain containing 1	0.998964	0.0	
chr14	73128792	73128922	reg1002189.p1	4.507	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-728991	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-729704	+	AK294895 NM_001204423	-730041	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	231951	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	264278	+	AK098542 AF311602 NM_178441	324800	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.0	0.0	
chr8	62407643	62407763	reg1012145.p1	4.507	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	-207153	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-816301	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-816415	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	194643	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	219315	-	TSC_hg19_v1_chr8_-_62627152 BC015518 BC025236 AK298577	219435	-	NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase##BC015518|ASPH|444|aspartate beta-hydroxylase##BC025236|ASPH|444|aspartate beta-hydroxylase##AK298577|ASPH|444|aspartate beta-hydroxylase	0.0	0.0	
chr11	32635178	32635358	reg1008871.p2	4.506	+	TSC_hg19_v1_chr11_+_32605376 AK131064 AK292139 AK304378 AK001768 AK300002 AF064603 BC051292 BC011937 BC019103 NM_006360 AK222564 AK307121 CU676384 AY769947 CR450300 DQ185042	-29870	+	TSC_hg19_v1_chr11_+_32605343 AK312512	-29928	+	TSC_hg19_v1_chr11_-_32457072 X51630 AK291736 NM_000378 NM_024424 NM_024426	-178199	-	BC146800 AK131470 NM_001008391 BC062749	180909	-	TSC_hg19_v1_chr11_+_32851476 BC010052 NM_024081 BC063393 AF326351	216282	+	TSC_hg19_v1_chr11_+_32914677 BC112935 NM_001076786	279307	+	AK131064|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK292139|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK304378|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK001768|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK300002|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AF064603|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##BC051292|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##BC011937|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##BC019103|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##NM_006360|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK222564|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK307121|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AY769947|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##CR450300|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##DQ185042|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##AK312512|EIF3M|10480|eukaryotic translation initiation factor 3, subunit M##X51630|WT1|7490|Wilms tumor 1##AK291736|WT1|7490|Wilms tumor 1##NM_000378|WT1|7490|Wilms tumor 1##NM_024424|WT1|7490|Wilms tumor 1##NM_024426|WT1|7490|Wilms tumor 1##BC146800|CCDC73|493860|coiled-coil domain containing 73##AK131470|CCDC73|493860|coiled-coil domain containing 73##NM_001008391|CCDC73|493860|coiled-coil domain containing 73##BC062749|CCDC73|493860|coiled-coil domain containing 73##BC010052|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##NM_024081|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##BC063393|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##AF326351|PRRG4|79056|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)##BC112935|QSER1|79832|glutamine and serine rich 1##NM_001076786|QSER1|79832|glutamine and serine rich 1	0.0	0.010669	
chr1	230239420	230239541	reg1011656.p1	4.506	+	TSC_hg19_v1_chr1_+_230203016 AK296886 AK290048 AK304029 AB591001 X85019	-36484	+	TSC_hg19_v1_chr1_+_230202957 BC041120 NM_004481	-36538	+	TSC_hg19_v1_chr1_+_229761993 BC114559 BC114963	-477466	+	BC150638 NM_024554	273910	-	TSC_hg19_v1_chr1_+_230778205 NM_001145036 NM_007357	538716	+	TSC_hg19_v1_chr1_+_230778250 AL832190 BC014960 AK302791	538753	+	AK296886|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK290048|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##AK304029|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##X85019|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC041120|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##NM_004481|GALNT2|2590|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)##BC114559|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC114963|URB2|9816|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)##BC150638|PGBD5|79605|piggyBac transposable element derived 5##NM_024554|PGBD5|79605|piggyBac transposable element derived 5##NM_001145036|COG2|22796|component of oligomeric golgi complex 2##NM_007357|COG2|22796|component of oligomeric golgi complex 2##AL832190|COG2|22796|component of oligomeric golgi complex 2##BC014960|COG2|22796|component of oligomeric golgi complex 2##AK302791|COG2|22796|component of oligomeric golgi complex 2	0.961243	0.019649	denovo_WM_7:0:0.289	denovo_WM_7:1:0.488
chr17	26266659	26266839	reg1010825.p1	4.506	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-46358	-	BC130283 BC144126 U05810 L09210 X73029 AF068236 AK304252 NM_000625 TSC_hg19_v1_chr17_-_26127556	-139234	-	U31511 TSC_hg19_v1_chr17_-_26127402	-139351	-	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	102904	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	103252	+	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	379444	+	AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##BC130283|NOS2|4843|nitric oxide synthase 2, inducible##BC144126|NOS2|4843|nitric oxide synthase 2, inducible##U05810|NOS2|4843|nitric oxide synthase 2, inducible##L09210|NOS2|4843|nitric oxide synthase 2, inducible##X73029|NOS2|4843|nitric oxide synthase 2, inducible##AF068236|NOS2|4843|nitric oxide synthase 2, inducible##AK304252|NOS2|4843|nitric oxide synthase 2, inducible##NM_000625|NOS2|4843|nitric oxide synthase 2, inducible##U31511|NOS2|4843|nitric oxide synthase 2, inducible##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK024686|NLK|51701|nemo-like kinase##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97	0.89735	0.0	denovo_WM_7:11:0.286	denovo_WM_7:14:0.219
chr2	114681508	114681688	reg1000317.p2	4.506	+	AB209353 TSC_hg19_v1_chr2_+_114674521	-7085	+	TSC_hg19_v1_chr2_+_114647862 AB527566 CU692216	-33748	+	TSC_hg19_v1_chr2_+_114647707 AK312659	-33890	+	BC030832 NM_020868	518300	+	AK055256 BC038514 NM_001178036	537568	+	NM_001178037 DQ857321	1140692	+	AB209353|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK312659|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##BC030832|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_020868|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178037|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##DQ857321|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)	0.998897	0.0	denovo_WM_7:41:0.310	denovo_WM_7:42:0.310	denovo_WM_7:43:0.310
chr21	32567849	32568029	reg1009385.p1	4.506	+	AB096964 NM_001099219	-157145	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-314081	-	AJ457063 AB096962 NM_181606	-365951	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	363419	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	464068	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	506179	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.0	0.0	
chr11	778025	778205	reg1013542.p1	4.505	+	BC110868 TSC_hg19_v1_chr11_-_777488 BC143419 BC112145 BC143415 BC143416 BC143418 BC143420 BC143421 BC143422 BC143423 AK091602 AX747087 AK309153 AK092816 AK293559 AX747745 NM_182612 AK128653	-620	-	TSC_hg19_v1_chr11_+_747461 AK295537 AK313427 AK130060 AB528639 CU679621 BC018847	-30649	+	TSC_hg19_v1_chr11_+_747430 L19437 NM_006755	-30681	+	TSC_hg19_v1_chr11_-_790103 BC034732 AK074547 AK312993 NM_016564	11999	-	AB528574 CU676356 DQ892920 DQ895939 AJ428202 AK023106 TSC_hg19_v1_chr11_-_795170	16973	-	TSC_hg19_v1_chr11_-_796225 BC023545 AK311038 NM_024698	18130	-	BC110868|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143419|PDDC1|347862|Parkinson disease 7 domain containing 1##BC112145|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143415|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143416|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143418|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143420|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143421|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143422|PDDC1|347862|Parkinson disease 7 domain containing 1##BC143423|PDDC1|347862|Parkinson disease 7 domain containing 1##AK091602|PDDC1|347862|Parkinson disease 7 domain containing 1##AK309153|PDDC1|347862|Parkinson disease 7 domain containing 1##AK092816|PDDC1|347862|Parkinson disease 7 domain containing 1##AK293559|PDDC1|347862|Parkinson disease 7 domain containing 1##NM_182612|PDDC1|347862|Parkinson disease 7 domain containing 1##AK128653|PDDC1|347862|Parkinson disease 7 domain containing 1##AK295537|TALDO1|6888|transaldolase 1##AK313427|TALDO1|6888|transaldolase 1##BC018847|TALDO1|6888|transaldolase 1##L19437|TALDO1|6888|transaldolase 1##NM_006755|TALDO1|6888|transaldolase 1##BC034732|CEND1|51286|cell cycle exit and neuronal differentiation 1##AK074547|CEND1|51286|cell cycle exit and neuronal differentiation 1##AK312993|CEND1|51286|cell cycle exit and neuronal differentiation 1##NM_016564|CEND1|51286|cell cycle exit and neuronal differentiation 1##DQ892920|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##DQ895939|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##AJ428202|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##AK023106|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##BC023545|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##AK311038|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22##NM_024698|SLC25A22|79751|solute carrier family 25 (mitochondrial carrier: glutamate), member 22	0.991483	0.0	
chr14	61795852	61795962	reg1002294.p2	4.505	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-7380	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-47385	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-47713	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	366283	+	FJ790247 NM_001243084	368432	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	433212	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.993773	0.0	
chr16	23573078	23573177	reg1008540.p1	4.505	+	TSC_hg19_v1_chr16_+_23569047 AK092696	-4079	+	TSC_hg19_v1_chr16_+_23569043 AK124139	-4092	+	TSC_hg19_v1_chr16_+_23568953 NM_019116	-4212	+	EF036489 EF036490 TSC_hg19_v1_chr16_-_23607638 BC058920 AK311877 AF087660 NM_005003	34495	-	EU831610 EU831697 TSC_hg19_v1_chr16_-_23652639 AK299152 BC044254 BX647125 AK097533 CR749637 BX647130 NM_024675	79451	-	NM_001199011 NM_001199743 NM_032486 TSC_hg19_v1_chr16_+_23652786 AK292843 AK299631 BC004191 AK027387	79627	+	AK092696|UBFD1|56061|ubiquitin family domain containing 1##AK124139|UBFD1|56061|ubiquitin family domain containing 1##NM_019116|UBFD1|56061|ubiquitin family domain containing 1##EF036489|NDUFAB1|4706|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa##EF036490|NDUFAB1|4706|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa##BC058920|NDUFAB1|4706|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa##AK311877|NDUFAB1|4706|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa##AF087660|NDUFAB1|4706|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa##NM_005003|NDUFAB1|4706|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa##EU831610|PALB2|79728|partner and localizer of BRCA2##EU831697|PALB2|79728|partner and localizer of BRCA2##AK299152|PALB2|79728|partner and localizer of BRCA2##BC044254|PALB2|79728|partner and localizer of BRCA2##BX647125|PALB2|79728|partner and localizer of BRCA2##AK097533|PALB2|79728|partner and localizer of BRCA2##CR749637|PALB2|79728|partner and localizer of BRCA2##BX647130|PALB2|79728|partner and localizer of BRCA2##NM_024675|PALB2|79728|partner and localizer of BRCA2##NM_001199011|DCTN5|84516|dynactin 5 (p25)##NM_001199743|DCTN5|84516|dynactin 5 (p25)##NM_032486|DCTN5|84516|dynactin 5 (p25)##AK292843|DCTN5|84516|dynactin 5 (p25)##AK299631|DCTN5|84516|dynactin 5 (p25)##BC004191|DCTN5|84516|dynactin 5 (p25)##AK027387|DCTN5|84516|dynactin 5 (p25)	0.991737	0.0	denovo_WM_7:24:0.331	denovo_WM_7:25:0.331	denovo_WM_7:26:0.331
chr16	29559977	29560145	reg1015061.p1	4.505	+	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-88835	+	BC022832 NM_001031827 NM_001039182	-93777	-	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	-94210	+	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	46284	-	TSC_hg19_v1_chr16_-_29606667 AK316536	46612	-	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	64981	-	AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene	0.0	0.0	
chr16	3550825	3550971	reg1015800.p1	4.505	+	NM_001080524	-5478	-	AK095819 TSC_hg19_v1_chr16_+_3533613	-17352	+	TSC_hg19_v1_chr16_+_3508044 NM_001083600 NM_024845 AK092005 AK298566 AK024216 AK130792 AK225178 AK311524 AY358543 AK302361	-42753	+	TSC_hg19_v1_chr16_+_3551003 AB089691 NM_015041 BC017070 AB014543 AB527560	93	+	AK023359 NM_024793	8995	+	TSC_hg19_v1_chr16_-_3627397 AY601811 NM_178844 AK090431 AK090476	76501	-	NM_001080524|C16orf90|646174|chromosome 16 open reading frame 90##AK095819|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##NM_001083600|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##NM_024845|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK092005|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK298566|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK024216|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK130792|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK225178|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK311524|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AY358543|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AK302361|NAA60|79903|N(alpha)-acetyltransferase 60, NatF catalytic subunit##AB089691|CLUAP1|23059|clusterin associated protein 1##NM_015041|CLUAP1|23059|clusterin associated protein 1##BC017070|CLUAP1|23059|clusterin associated protein 1##AB014543|CLUAP1|23059|clusterin associated protein 1##AK023359|CLUAP1|23059|clusterin associated protein 1##NM_024793|CLUAP1|23059|clusterin associated protein 1##AY601811|NLRC3|197358|NLR family, CARD domain containing 3##NM_178844|NLRC3|197358|NLR family, CARD domain containing 3##AK090431|NLRC3|197358|NLR family, CARD domain containing 3##AK090476|NLRC3|197358|NLR family, CARD domain containing 3	0.0	0.025043	
chr18	55289116	55289296	reg1001654.p1	4.505	+	TSC_hg19_v1_chr18_-_55289034 AK293985 NM_004539	-105	-	TSC_hg19_v1_chr18_-_55289015 AK297777 BC001687 AK222835 AK294364	-187	-	AK294763 TSC_hg19_v1_chr18_-_55289009 AJ000334	-197	-	NM_001242804 BC040476	8351	+	TSC_hg19_v1_chr18_-_55470548 NM_005603	181264	-	TSC_hg19_v1_chr18_+_55711515 NM_001144967 NM_001243960 NM_015277	422330	+	AK293985|NARS|4677|asparaginyl-tRNA synthetase##NM_004539|NARS|4677|asparaginyl-tRNA synthetase##AK297777|NARS|4677|asparaginyl-tRNA synthetase##BC001687|NARS|4677|asparaginyl-tRNA synthetase##AK222835|NARS|4677|asparaginyl-tRNA synthetase##AK294364|NARS|4677|asparaginyl-tRNA synthetase##AK294763|NARS|4677|asparaginyl-tRNA synthetase##AJ000334|NARS|4677|asparaginyl-tRNA synthetase##NM_001242804|LOC100505549|100505549|uncharacterized LOC100505549##BC040476|LOC100505549|100505549|uncharacterized LOC100505549##NM_005603|ATP8B1|5205|ATPase, aminophospholipid transporter, class I, type 8B, member 1##NM_001144967|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001243960|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_015277|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like	0.0	0.0	
chr19	8259264	8259444	reg1001811.p4	4.505	+	AB384635 AB053450 BC153882 NM_032447	-46979	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-141407	+	AK292662 NM_001201359 NM_005624	-141709	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	14894	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	113855	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	126903	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.0	0.0	
chr13	24495639	24495773	reg1013475.p1	4.504	+	NM_001007537 CU691876 BC137004 BC137006 BC144450	-24548	-	NM_001135816 BC142999	-32114	+	TSC_hg19_v1_chr13_-_24463540 DQ893610 DQ896839 AK291923 U80034 AK225290 AK308908 BC009934 NM_005932	-32192	-	BX648445 TSC_hg19_v1_chr13_+_24553892	58159	+	TSC_hg19_v1_chr13_+_24553943 BX648244 BC043582	58227	+	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	239189	+	NM_001007537|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137004|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137006|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC144450|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##NM_001135816|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC142999|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##DQ893610|MIPEP|4285|mitochondrial intermediate peptidase##DQ896839|MIPEP|4285|mitochondrial intermediate peptidase##AK291923|MIPEP|4285|mitochondrial intermediate peptidase##U80034|MIPEP|4285|mitochondrial intermediate peptidase##AK225290|MIPEP|4285|mitochondrial intermediate peptidase##AK308908|MIPEP|4285|mitochondrial intermediate peptidase##BC009934|MIPEP|4285|mitochondrial intermediate peptidase##NM_005932|MIPEP|4285|mitochondrial intermediate peptidase##BX648244|SPATA13|221178|spermatogenesis associated 13##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13	0.0	0.971573	CTCF.p2:-3:0.972
chr13	31201598	31201769	reg1001406.p1	4.503	+	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	-9720	+	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	-10056	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	-161625	-	AK314143 NM_001204406	85931	+	NM_001629 TSC_hg19_v1_chr13_+_31309681	107981	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	108032	+	NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein	0.993486	0.0	denovo_WM_7:-16:0.440	denovo_WM_7:-17:0.513
chr2	44463362	44463485	reg1002433.p1	4.503	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-67313	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-67408	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-240284	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	39212	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	123447	-	DQ023503 DQ023504 DQ023505 NM_006036	124389	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.857496	0.0	denovo_WM_7:-38:0.442
chr9	6950021	6950159	reg1011017.p1	4.503	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	-192051	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	-192423	+	AK310439 NM_001146696	-229228	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	849625	-	TSC_hg19_v1_chr9_+_8713275 AY779046	1763202	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	1783829	-	AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123##AY779046|RPL18A|6142|ribosomal protein L18a##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D	1.963417	0.0	denovo_WM_7:-7:0.711	denovo_WM_7:-38:0.496	denovo_WM_7:-39:0.496
chr11	63659867	63660005	reg1010264.p1	4.502	+	NM_017490 AK290339 TSC_hg19_v1_chr11_+_63656059 X97630 AY562188	-3860	+	TSC_hg19_v1_chr11_+_63606599 AK307858	-53332	+	TSC_hg19_v1_chr11_+_63606564 AK225766	-53387	+	BC023587 NM_173587	24379	-	TSC_hg19_v1_chr11_-_63684632 AB593132	24703	-	TSC_hg19_v1_chr11_+_63706473 NM_024771 AK023910 AK300451 AK303557 JF263566 BC041617 BC052298	46548	+	NM_017490|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK290339|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##X97630|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AY562188|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK307858|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK225766|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##AB593132|RCOR2|283248|REST corepressor 2##NM_024771|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK023910|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK300451|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK303557|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##JF263566|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC041617|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC052298|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	0.0	0.044817	
chr14	74556044	74556181	reg1012969.p1	4.502	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	-4444	+	TSC_hg19_v1_chr14_-_74551167 BC032371 NM_005589	-4923	-	AF038011 TSC_hg19_v1_chr14_-_74551122 AF159889 CU678802 DQ892921 DQ893680 EU176729 AK223244 AJ249994 BC004909 AK222687 AF148505 AK312389 AK294243 AK311478	-4997	-	AY336059 NM_182894 BC128153	150084	+	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	213578	-	NM_018228 TSC_hg19_v1_chr14_+_74815173	259057	+	NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##BC032371|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_005589|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF038011|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF159889|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ892921|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ893680|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##EU176729|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK223244|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AJ249994|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##BC004909|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK222687|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF148505|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK312389|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK294243|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK311478|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_018228|VRTN|55237|vertebrae development homolog (pig)	0.998582	0.0	denovo_WM_7:-29:0.494	denovo_WM_7:-30:0.494
chr6	36692857	36693006	reg1014088.p2	4.502	+	AK125083 TSC_hg19_v1_chr6_+_36665627	-27303	+	TSC_hg19_v1_chr6_+_36646490 BC013967 AB209881 BC001935 BC000312 L25610 L26165 U03106 S67388 BC000275 L47232 L47233 AY008263	-46406	+	NM_000389 TSC_hg19_v1_chr6_+_36646486 AK309512 NM_001220778 U09579	-46460	+	TSC_hg19_v1_chr6_-_36807217 NM_020939	114287	-	TSC_hg19_v1_chr6_-_36807775 AB046819	114861	-	DQ892513 DQ895727 AB528504 TSC_hg19_v1_chr6_-_36842573 AK026636	149646	-	AK125083|RAB44|401258|RAB44, member RAS oncogene family##BC013967|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AB209881|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC001935|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000312|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L25610|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L26165|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U03106|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##S67388|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##BC000275|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47232|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##L47233|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_000389|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##AK309512|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_001220778|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##U09579|CDKN1A|1026|cyclin-dependent kinase inhibitor 1A (p21, Cip1)##NM_020939|CPNE5|57699|copine V##AB046819|CPNE5|57699|copine V##DQ892513|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##DQ895727|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1##AK026636|PPIL1|51645|peptidylprolyl isomerase (cyclophilin)-like 1	0.0	0.0	
chr5	175941779	175941921	reg1010031.p2	4.501	+	TSC_hg19_v1_chr5_+_175875393 BC006145 BC014001 AB088120 AB020694	-66451	+	TSC_hg19_v1_chr5_+_175875385 AK304346	-66468	+	TSC_hg19_v1_chr5_+_175875374 BC001069	-66475	+	TSC_hg19_v1_chr5_-_175964314 AB029023 BC039833 BC063297 NM_014901	22477	-	TSC_hg19_v1_chr5_-_175964932 AK302385	23074	-	AK315055 NM_001171976	27661	+	BC006145|FAF2|23197|Fas associated factor family member 2##BC014001|FAF2|23197|Fas associated factor family member 2##AB088120|FAF2|23197|Fas associated factor family member 2##AB020694|FAF2|23197|Fas associated factor family member 2##AK304346|FAF2|23197|Fas associated factor family member 2##BC001069|FAF2|23197|Fas associated factor family member 2##AB029023|RNF44|22838|ring finger protein 44##BC039833|RNF44|22838|ring finger protein 44##BC063297|RNF44|22838|ring finger protein 44##NM_014901|RNF44|22838|ring finger protein 44##AK302385|RNF44|22838|ring finger protein 44##AK315055|CDHR2|54825|cadherin-related family member 2##NM_001171976|CDHR2|54825|cadherin-related family member 2	0.996972	0.0	denovo_WM_7:-50:0.997
chr5	177548022	177548127	reg1012226.p1	4.501	+	TSC_hg19_v1_chr5_+_177540665 BC053323 NM_015111	-7446	+	TSC_hg19_v1_chr5_+_177482580 AB055766	-65496	+	AF076215 NM_006261	-124832	-	TSC_hg19_v1_chr5_+_177558014 AK093481 AK094065 AX748156 AX748436 AK125337	9937	+	TSC_hg19_v1_chr5_+_177558026 BC009911 DQ494789 NM_022762	9958	+	CR457238 AF401219 TSC_hg19_v1_chr5_-_177580868 AK000486 BC000009 AF161404 AJ293309 BC006387	32783	-	BC053323|N4BP3|23138|NEDD4 binding protein 3##NM_015111|N4BP3|23138|NEDD4 binding protein 3##AB055766|RPL19|6143|ribosomal protein L19##AF076215|PROP1|5626|PROP paired-like homeobox 1##NM_006261|PROP1|5626|PROP paired-like homeobox 1##AK093481|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK094065|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK125337|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##BC009911|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##DQ494789|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##NM_022762|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##CR457238|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF401219|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AK000486|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC000009|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF161404|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AJ293309|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC006387|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)	0.0	0.914383	CTCF.p2:-16:0.914
chr6	16825123	16825283	reg1012049.p1	4.501	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	-63506	-	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-586352	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-681893	+	NM_001190766	277285	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	456651	+	NM_001143941	457091	+	BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24	0.493767	0.0	denovo_WM_7:-6:0.296
chr14	34484599	34484689	reg1006722.p2	4.500	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-64495	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1076154	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1686108	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	446843	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	524241	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	614711	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	1.006286	0.0	
chr14	67219173	67219271	reg1004774.p2	4.500	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-243997	+	TSC_hg19_v1_chr14_+_66974870 AK315569	-244353	+	TSC_hg19_v1_chr14_+_66974859 AK025169	-244369	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	436921	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	488941	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	607344	-	AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D	0.0	0.0	
chr1	68284015	68284161	reg1009267.p1	4.500	+	TSC_hg19_v1_chr1_+_68151094 AB463698 AM393439 DQ893229 DQ896558	-132954	+	TSC_hg19_v1_chr1_+_68150883 AK314991 NM_001199741 NM_001199742 NM_001924 M60974 BC011757 DQ008445 EF581092 EF614238	-133178	+	TSC_hg19_v1_chr1_-_67896101 NM_001018067 NM_001018068 NM_001018069 NM_015640	-387971	-	AK124028 TSC_hg19_v1_chr1_+_68297985 AK096081	13900	+	TSC_hg19_v1_chr1_-_68299145 AF365871 AK293101 AK223000 AL832431 AF119663 AF123766 BC005940 NM_018841	15022	-	BC005362 U96750 NM_004675	232297	-	AM393439|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ893229|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ896558|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##AK314991|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199741|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001199742|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001924|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##M60974|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##BC011757|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##DQ008445|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF581092|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##EF614238|GADD45A|1647|growth arrest and DNA-damage-inducible, alpha##NM_001018067|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018068|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_001018069|SERBP1|26135|SERPINE1 mRNA binding protein 1##NM_015640|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK124028|LOC100289178|100289178|uncharacterized LOC100289178##AF365871|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AK293101|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AK223000|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AL832431|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AF119663|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##AF123766|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##BC005940|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##NM_018841|GNG12|55970|guanine nucleotide binding protein (G protein), gamma 12##BC005362|DIRAS3|9077|DIRAS family, GTP-binding RAS-like 3##U96750|DIRAS3|9077|DIRAS family, GTP-binding RAS-like 3##NM_004675|DIRAS3|9077|DIRAS family, GTP-binding RAS-like 3	1.881098	0.0	denovo_WM_7:15:0.647	denovo_WM_7:30:0.656
chr17	44221750	44221930	reg1007536.p2	4.500	+	TSC_hg19_v1_chr17_+_44101553 AB073354	-120270	+	BC130319 BC130321 NM_001007532 AY179170	-145210	+	TSC_hg19_v1_chr17_+_44068829 AY526356	-153006	+	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	48314	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	48469	-	AK291259 NM_001193465	80887	-	AB073354|MAPT|4137|microtubule-associated protein tau##BC130319|STH|246744|saitohin##BC130321|STH|246744|saitohin##NM_001007532|STH|246744|saitohin##AY179170|STH|246744|saitohin##AY526356|MAPT|4137|microtubule-associated protein tau##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267	0.0	0.0	
chr3	96210026	96210166	reg1013393.p1	4.500	+	AK122674 NM_001195643	-2428030	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-2428252	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-2428352	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	323334	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	948375	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	1273504	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.069701	0.0	
chr5	149184201	149184328	reg1011572.p1	4.500	+	AK123614 NM_001172699	-32762	+	TSC_hg19_v1_chr5_+_149109872 AY188949 AY188950 AF468496 AF468497 AY188947 AY188948 AK095391	-74388	+	BC132971 BC132973 BC144251 NM_001172698 NM_133263 TSC_hg19_v1_chr5_+_149109839	-74437	+	BC144044 BC035909 AB593141 M26061 NM_000440	140054	-	TSC_hg19_v1_chr5_+_149340320 NM_000112	156044	+	TSC_hg19_v1_chr5_+_149340352 AK312596	156087	+	AK123614|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_001172699|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188949|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188950|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468496|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468497|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188947|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188948|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AK095391|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC132971|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC132973|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC144251|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_001172698|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_133263|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC144044|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##BC035909|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##AB593141|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##M26061|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##NM_000440|PDE6A|5145|phosphodiesterase 6A, cGMP-specific, rod, alpha##NM_000112|SLC26A2|1836|solute carrier family 26 (sulfate transporter), member 2##AK312596|SLC26A2|1836|solute carrier family 26 (sulfate transporter), member 2	0.92386	0.0	denovo_WM_7:-20:0.458	denovo_WM_7:-23:0.240
chr6	36973110	36973290	reg1009141.p2	4.500	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-18930	-	AK022783 TSC_hg19_v1_chr6_-_36953950 AF176006 AF192559 BC125055 BC153873 NM_014341 BC110914	-19223	-	TSC_hg19_v1_chr6_-_36953944 BC125056	-19257	-	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	301	+	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	164922	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	252186	-	AK315067|MTCH1|23787|mitochondrial carrier 1##AK022783|MTCH1|23787|mitochondrial carrier 1##AF176006|MTCH1|23787|mitochondrial carrier 1##AF192559|MTCH1|23787|mitochondrial carrier 1##BC125055|MTCH1|23787|mitochondrial carrier 1##BC153873|MTCH1|23787|mitochondrial carrier 1##NM_014341|MTCH1|23787|mitochondrial carrier 1##BC110914|MTCH1|23787|mitochondrial carrier 1##BC125056|MTCH1|23787|mitochondrial carrier 1##BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217	0.999042	0.0	
chr8	101918225	101918344	reg1001526.p3	4.500	+	BC041863 TSC_hg19_v1_chr8_-_101734972	-183318	-	Y00345 TSC_hg19_v1_chr8_-_101734316 AK130523 AK303120 NM_002568	-183967	-	BC015958 BC023217 BC023520 TSC_hg19_v1_chr8_-_101734301	-183989	-	TSC_hg19_v1_chr8_-_101936525 DQ185048	18240	-	TSC_hg19_v1_chr8_-_101962797 NM_001135702	44515	-	TSC_hg19_v1_chr8_-_101963538 NM_001135700 NM_001135701	45178	-	BC041863|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##Y00345|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK130523|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK303120|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##NM_002568|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC015958|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC023217|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC023520|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ185048|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135702|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135700|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135701|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	0.995612	0.0	denovo_WM_7:65:0.422	denovo_WM_7:67:0.456
chr11	19197176	19197356	reg1001069.p2	4.499	+	TSC_hg19_v1_chr11_+_19138714 BC050690 BC056152 NM_001001483 NM_019028 AB097014 AB097027 AK001714 BX648156 BC036020 AK291348 AB024495 CU691124	-58549	+	BC063450 NM_054030	-115039	-	BC096835 NM_147199	-240720	-	U20324 U72899 U49837 BC057221 NM_001127656 TSC_hg19_v1_chr11_-_19223531 AK313289 NM_003476 AF121260	26292	-	TSC_hg19_v1_chr11_-_19262479 AK055206 BC108700 BC126400 BC126402 NM_024680	65209	-	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	65935	-	BC050690|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC056152|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_001001483|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_019028|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097014|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097027|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK001714|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BX648156|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC036020|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK291348|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB024495|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC063450|MRGPRX2|117194|MAS-related GPR, member X2##NM_054030|MRGPRX2|117194|MAS-related GPR, member X2##BC096835|MRGPRX1|259249|MAS-related GPR, member X1##NM_147199|MRGPRX1|259249|MAS-related GPR, member X1##U20324|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U72899|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U49837|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##BC057221|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_001127656|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK313289|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_003476|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AF121260|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK055206|E2F8|79733|E2F transcription factor 8##BC108700|E2F8|79733|E2F transcription factor 8##BC126400|E2F8|79733|E2F transcription factor 8##BC126402|E2F8|79733|E2F transcription factor 8##NM_024680|E2F8|79733|E2F transcription factor 8##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8	0.983405	0.0	denovo_WM_7:90:0.936
chr12	102454758	102454876	reg1011626.p1	4.499	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	-183359	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	-183699	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-230231	-	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	933	-	TSC_hg19_v1_chr12_-_102455791 BC010889	960	-	TSC_hg19_v1_chr12_-_102455912 AK314970 AK223339 AF151874 AF155655 NM_016053	1044	-	AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##CR457171|CCDC53|51019|coiled-coil domain containing 53##BC010889|CCDC53|51019|coiled-coil domain containing 53##AK314970|CCDC53|51019|coiled-coil domain containing 53##AK223339|CCDC53|51019|coiled-coil domain containing 53##AF151874|CCDC53|51019|coiled-coil domain containing 53##AF155655|CCDC53|51019|coiled-coil domain containing 53##NM_016053|CCDC53|51019|coiled-coil domain containing 53	1.02965	0.0	
chr15	85147841	85147927	reg1005088.p1	4.499	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	-3603	+	NM_001243531	-306643	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-825057	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	49588	-	TSC_hg19_v1_chr15_-_85197503 AF161382 AK295372 BC014115 AK027794 AK055729 AK225199	49622	-	TSC_hg19_v1_chr15_-_85197515 AK225068 NM_032856 BC050648 BC063392	49642	-	AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73##AF161382|WDR73|84942|WD repeat domain 73##AK295372|WDR73|84942|WD repeat domain 73##BC014115|WDR73|84942|WD repeat domain 73##AK027794|WDR73|84942|WD repeat domain 73##AK055729|WDR73|84942|WD repeat domain 73##AK225199|WDR73|84942|WD repeat domain 73##AK225068|WDR73|84942|WD repeat domain 73##NM_032856|WDR73|84942|WD repeat domain 73##BC050648|WDR73|84942|WD repeat domain 73##BC063392|WDR73|84942|WD repeat domain 73	1.9776	0.0	denovo_WM_7:77:0.694	denovo_WM_7:93:0.308	denovo_WM_7:94:0.312	denovo_WM_7:95:0.328
chr19	41259174	41259279	reg1004804.p3	4.499	+	TSC_hg19_v1_chr19_+_41257100 AK293140 AK313182 X06347 BC008290 AB464219 CU674198	-2027	+	NM_004596 TSC_hg19_v1_chr19_+_41256782 BC000405	-2450	+	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	-2824	-	NM_001202553	21855	+	NM_006533 X75450 BC005910 BT007044 CR541648	22138	+	TSC_hg19_v1_chr19_+_41284141 NM_016154	24878	+	AK293140|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK313182|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##X06347|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC008290|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##NM_004596|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC000405|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54##NM_001202553|MIA|8190|melanoma inhibitory activity##NM_006533|MIA|8190|melanoma inhibitory activity##X75450|MIA|8190|melanoma inhibitory activity##BC005910|MIA|8190|melanoma inhibitory activity##BT007044|MIA|8190|melanoma inhibitory activity##CR541648|MIA|8190|melanoma inhibitory activity##NM_016154|RAB4B|53916|RAB4B, member RAS oncogene family	2.835686	0.0	denovo_WM_7:34:0.316	denovo_WM_7:35:0.452	denovo_WM_7:70:0.931	denovo_WM_7:85:0.954
chr22	35790943	35791123	reg1010562.p1	4.499	+	AF051791 TSC_hg19_v1_chr22_+_35779219	-11871	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	-13907	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	-13965	+	TSC_hg19_v1_chr22_+_35796134 NM_006739 AK223323 AK301121 D83986 AK130620 AK291136 AK298624 AK122853 AK312533	5092	+	TSC_hg19_v1_chr22_+_35796157 BC000142 AK308343 CR456517 X74795 BC003656	5138	+	TSC_hg19_v1_chr22_+_35796295 AB463121 CU013117 CU013405 CU674060 CU678562	5329	+	AF051791|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##NM_006739|MCM5|4174|minichromosome maintenance complex component 5##AK223323|MCM5|4174|minichromosome maintenance complex component 5##AK301121|MCM5|4174|minichromosome maintenance complex component 5##D83986|MCM5|4174|minichromosome maintenance complex component 5##AK130620|MCM5|4174|minichromosome maintenance complex component 5##AK291136|MCM5|4174|minichromosome maintenance complex component 5##AK298624|MCM5|4174|minichromosome maintenance complex component 5##AK122853|MCM5|4174|minichromosome maintenance complex component 5##AK312533|MCM5|4174|minichromosome maintenance complex component 5##BC000142|MCM5|4174|minichromosome maintenance complex component 5##AK308343|MCM5|4174|minichromosome maintenance complex component 5##CR456517|MCM5|4174|minichromosome maintenance complex component 5##X74795|MCM5|4174|minichromosome maintenance complex component 5##BC003656|MCM5|4174|minichromosome maintenance complex component 5##CU013117|MCM5|4174|minichromosome maintenance complex component 5##CU013405|MCM5|4174|minichromosome maintenance complex component 5	0.0	0.0	
chr1	43758478	43758605	reg1010387.p1	4.498	+	BC041633 NM_182517 NM_001164829	-7279	-	TSC_hg19_v1_chr1_-_43736601 BC073924	-21938	-	NM_144626 BC072393	-22862	+	NM_001253357 NM_005424 AK307639 BC038239 AK300399 AK225560 AF217976 AK300623 X60957 AB385197 CU691552 EU826586 EU826587 EU826588 EU826589 EU826590	8112	+	NM_005373 AB463906 DQ234353 M90102 M90103	44955	+	AK303844 TSC_hg19_v1_chr1_+_43824652 BC001088 BC012827 NM_001255 AK302539 U05340 BC010044 BC009425 BC009426 BC012803 BC013303 BC024257 BC031294 AK225504 AK312780 BC015998 BC110321 BC000624 BC006272 AF099644 AB590358 DQ892290 DQ895489 EU831627 EU831712 CU674302 CU675321 CU679585 BT007388	66201	+	BC041633|C1orf210|149466|chromosome 1 open reading frame 210##NM_182517|C1orf210|149466|chromosome 1 open reading frame 210##NM_001164829|C1orf210|149466|chromosome 1 open reading frame 210##BC073924|EBNA1BP2|10969|EBNA1 binding protein 2##NM_144626|TMEM125|128218|transmembrane protein 125##BC072393|TMEM125|128218|transmembrane protein 125##NM_001253357|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##NM_005424|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK307639|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##BC038239|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK300399|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK225560|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AF217976|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##AK300623|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##X60957|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826586|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826587|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826588|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826589|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##EU826590|TIE1|7075|tyrosine kinase with immunoglobulin-like and EGF-like domains 1##NM_005373|MPL|4352|myeloproliferative leukemia virus oncogene##DQ234353|MPL|4352|myeloproliferative leukemia virus oncogene##M90102|MPL|4352|myeloproliferative leukemia virus oncogene##M90103|MPL|4352|myeloproliferative leukemia virus oncogene##AK303844|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC001088|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC012827|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##NM_001255|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK302539|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##U05340|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC010044|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC009425|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC009426|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC012803|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC013303|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC024257|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC031294|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK225504|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AK312780|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC015998|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC110321|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC000624|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BC006272|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##AF099644|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##DQ892290|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##DQ895489|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##EU831627|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##EU831712|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)##BT007388|CDC20|991|cell division cycle 20 homolog (S. cerevisiae)	0.997713	0.0	denovo_WM_7:-9:0.238	denovo_WM_7:-10:0.238	denovo_WM_7:-11:0.238	denovo_WM_7:-12:0.238
chr16	27409308	27409431	reg1003068.p1	4.498	+	TSC_hg19_v1_chr16_+_27341339 BC136365 BC151131	-68025	+	TSC_hg19_v1_chr16_+_27325301 BC110343 AK223591 X52425	-84051	+	TSC_hg19_v1_chr16_+_27325254 AK314863 NM_000418 NM_001008699 AK303255	-84115	+	AK292663 NM_181078 NM_181079 AK312825	4118	+	NM_021798 AY358826 AF254067	29235	+	TSC_hg19_v1_chr16_-_27561218 BX648143	151849	-	BC136365|IL4R|3566|interleukin 4 receptor##BC151131|IL4R|3566|interleukin 4 receptor##BC110343|IL4R|3566|interleukin 4 receptor##AK223591|IL4R|3566|interleukin 4 receptor##X52425|IL4R|3566|interleukin 4 receptor##AK314863|IL4R|3566|interleukin 4 receptor##NM_000418|IL4R|3566|interleukin 4 receptor##NM_001008699|IL4R|3566|interleukin 4 receptor##AK303255|IL4R|3566|interleukin 4 receptor##AK292663|IL21R|50615|interleukin 21 receptor##NM_181078|IL21R|50615|interleukin 21 receptor##NM_181079|IL21R|50615|interleukin 21 receptor##AK312825|IL21R|50615|interleukin 21 receptor##NM_021798|IL21R|50615|interleukin 21 receptor##AY358826|IL21R|50615|interleukin 21 receptor##AF254067|IL21R|50615|interleukin 21 receptor##BX648143|GTF3C1|2975|general transcription factor IIIC, polypeptide 1, alpha 220kDa	0.983653	0.0	denovo_WM_7:-92:0.258	denovo_WM_7:-96:0.590
chr18	19771064	19771145	reg1001121.p2	4.498	+	X95701 BC027891 NM_005257 TSC_hg19_v1_chr18_+_19749549	-21628	+	AK123079 TSC_hg19_v1_chr18_-_19749029	-22118	-	CR749635 TSC_hg19_v1_chr18_+_19353654	-417457	+	HQ258502 BC132871 AF273058 BC031065 BC070128 NM_172241	226721	-	TSC_hg19_v1_chr18_+_20513319 NM_002894 U72066 AK292481	742244	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	742711	+	X95701|GATA6|2627|GATA binding protein 6##BC027891|GATA6|2627|GATA binding protein 6##NM_005257|GATA6|2627|GATA binding protein 6##AK123079|LOC100128893|100128893|uncharacterized LOC100128893##CR749635|MIB1|57534|mindbomb homolog 1 (Drosophila)##HQ258502|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC132871|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##AF273058|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC031065|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC070128|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_172241|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_002894|RBBP8|5932|retinoblastoma binding protein 8##U72066|RBBP8|5932|retinoblastoma binding protein 8##AK292481|RBBP8|5932|retinoblastoma binding protein 8##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8	0.0	0.0	
chr19	952385	952531	reg1009397.p2	4.498	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-26447	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-35065	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-39234	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	31876	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	47907	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	68600	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	1.58873	0.0	denovo_WM_7:-7:0.310	denovo_WM_7:7:0.470	denovo_WM_7:-8:0.319
chr22	44586972	44587149	reg1000768.p1	4.498	+	NM_001137606 TSC_hg19_v1_chr22_+_44577256	-9804	+	AK307299 TSC_hg19_v1_chr22_+_44577227 AK311264	-9836	+	NM_022141 AK225929 AK307294 BC034406 AF237772	-10248	+	NM_001099294	121670	-	AK126304 TSC_hg19_v1_chr22_-_44893199	306136	-	AB463098 CU013037 CU013325 CR456439 TSC_hg19_v1_chr22_-_44893542	306429	-	NM_001137606|PARVG|64098|parvin, gamma##AK307299|PARVG|64098|parvin, gamma##NM_022141|PARVG|64098|parvin, gamma##AK225929|PARVG|64098|parvin, gamma##AK307294|PARVG|64098|parvin, gamma##BC034406|PARVG|64098|parvin, gamma##AF237772|PARVG|64098|parvin, gamma##NM_001099294|KIAA1644|85352|KIAA1644##AK126304|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like##CU013037|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like##CU013325|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like##CR456439|LDOC1L|84247|leucine zipper, down-regulated in cancer 1-like	0.0	0.0	
chr3	184430543	184430663	reg1010012.p2	4.498	+	AB590456 CU679591 AF320910 TSC_hg19_v1_chr3_-_184429853 AF295378 BC010056 NM_022149	-840	-	TSC_hg19_v1_chr3_+_184279572 NM_004443 BC052968	-151021	+	AF209928 AF209929 AF209930 AF283325 NM_003741 AY358926 BC112345 AB208947 AK074147 AK293456 AK295632	-332563	+	TSC_hg19_v1_chr3_+_184529961 NM_001009921 NM_015303 AK056661 AK292423 BX647915	99320	+	TSC_hg19_v1_chr3_+_184529983 BC140768	99392	+	TSC_hg19_v1_chr3_-_184870632 BC137178 BC137179 BC150565	440050	-	AF320910|MAGEF1|64110|melanoma antigen family F, 1##AF295378|MAGEF1|64110|melanoma antigen family F, 1##BC010056|MAGEF1|64110|melanoma antigen family F, 1##NM_022149|MAGEF1|64110|melanoma antigen family F, 1##NM_004443|EPHB3|2049|EPH receptor B3##BC052968|EPHB3|2049|EPH receptor B3##AF209928|CHRD|8646|chordin##AF209929|CHRD|8646|chordin##AF209930|CHRD|8646|chordin##AF283325|CHRD|8646|chordin##NM_003741|CHRD|8646|chordin##AY358926|CHRD|8646|chordin##BC112345|CHRD|8646|chordin##AB208947|CHRD|8646|chordin##AK074147|CHRD|8646|chordin##AK293456|CHRD|8646|chordin##AK295632|CHRD|8646|chordin##NM_001009921|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##NM_015303|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK056661|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK292423|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BX647915|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC140768|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC137178|C3orf70|285382|chromosome 3 open reading frame 70##BC137179|C3orf70|285382|chromosome 3 open reading frame 70##BC150565|C3orf70|285382|chromosome 3 open reading frame 70	1.83597	0.0	denovo_WM_7:18:0.237	denovo_WM_7:19:0.237	denovo_WM_7:20:0.237	denovo_WM_7:21:0.237	denovo_WM_7:70:0.823
chr11	23100186	23100352	reg1010828.p1	4.497	+	NM_001195637	-218298	-	TSC_hg19_v1_chr11_-_22851382 AL833119 AF527534 NM_148893	-248924	-	TSC_hg19_v1_chr11_+_22696382 CU680566 AB590780 CR450285	-403871	+	AK127695 NM_001009909 NM_001252008 NM_001252010 TSC_hg19_v1_chr11_+_24518540 AY164460 AL832641 AY358386 BC132829 BC144177 AK309077 BC151234 HQ258382	1418380	+	NM_031418 AK302659	3253461	+	AK128337 AJ417818 AJ507429 BC058007 AY358668 BC020912 NM_001135091 NM_001135092 NM_145650	3493471	-	NM_001195637|LOC100500938|100500938|uncharacterized LOC100500938##AL833119|SVIP|258010|small VCP/p97-interacting protein##AF527534|SVIP|258010|small VCP/p97-interacting protein##NM_148893|SVIP|258010|small VCP/p97-interacting protein##CR450285|GAS2|2620|growth arrest-specific 2##AK127695|LUZP2|338645|leucine zipper protein 2##NM_001009909|LUZP2|338645|leucine zipper protein 2##NM_001252008|LUZP2|338645|leucine zipper protein 2##NM_001252010|LUZP2|338645|leucine zipper protein 2##AY164460|LUZP2|338645|leucine zipper protein 2##AL832641|LUZP2|338645|leucine zipper protein 2##AY358386|LUZP2|338645|leucine zipper protein 2##BC132829|LUZP2|338645|leucine zipper protein 2##BC144177|LUZP2|338645|leucine zipper protein 2##AK309077|LUZP2|338645|leucine zipper protein 2##BC151234|LUZP2|338645|leucine zipper protein 2##HQ258382|LUZP2|338645|leucine zipper protein 2##NM_031418|ANO3|63982|anoctamin 3##AK302659|ANO3|63982|anoctamin 3##AK128337|MUC15|143662|mucin 15, cell surface associated##AJ417818|MUC15|143662|mucin 15, cell surface associated##AJ507429|MUC15|143662|mucin 15, cell surface associated##BC058007|MUC15|143662|mucin 15, cell surface associated##AY358668|MUC15|143662|mucin 15, cell surface associated##BC020912|MUC15|143662|mucin 15, cell surface associated##NM_001135091|MUC15|143662|mucin 15, cell surface associated##NM_001135092|MUC15|143662|mucin 15, cell surface associated##NM_145650|MUC15|143662|mucin 15, cell surface associated	0.0	0.0	
chr14	94444810	94444964	reg1012250.p1	4.497	+	TSC_hg19_v1_chr14_-_94443079 AB488462 AK057078 NM_001202429	-1811	-	AK303686 TSC_hg19_v1_chr14_-_94442905	-1979	-	AB056723 NM_016150	-21121	-	TSC_hg19_v1_chr14_+_94492685 BC009615 BC068058 NM_023112	47816	+	AK025569 TSC_hg19_v1_chr14_+_94492747	47861	+	AB209382 AF161446 AK294613 TSC_hg19_v1_chr14_-_94547557 BC096826 AL136886 BC008847 BC009406 BX537533 AK296726 AK297232 AK304504 AK025162 AF214731 NM_020414	102639	-	AB488462|ASB2|51676|ankyrin repeat and SOCS box containing 2##AK057078|ASB2|51676|ankyrin repeat and SOCS box containing 2##NM_001202429|ASB2|51676|ankyrin repeat and SOCS box containing 2##AK303686|ASB2|51676|ankyrin repeat and SOCS box containing 2##AB056723|ASB2|51676|ankyrin repeat and SOCS box containing 2##NM_016150|ASB2|51676|ankyrin repeat and SOCS box containing 2##BC009615|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##BC068058|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##NM_023112|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##AK025569|OTUB2|78990|OTU domain, ubiquitin aldehyde binding 2##AB209382|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AF161446|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK294613|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BC096826|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AL136886|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BC008847|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BC009406|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##BX537533|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK296726|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK297232|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK304504|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AK025162|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##AF214731|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24##NM_020414|DDX24|57062|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	0.121983	0.0	
chr4	119487244	119487380	reg1014081.p1	4.497	+	TSC_hg19_v1_chr4_-_119273910 AJ001531 BC007761 NM_003619	-213387	-	TSC_hg19_v1_chr4_+_119199912 BC017993 BC039555	-287395	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	-531737	+	TSC_hg19_v1_chr4_+_119512929 AK024248	25622	+	TSC_hg19_v1_chr4_+_119606557 AK055555 AB046847 BC006565 BC007449 NM_020961 AB384254 CU675451	119299	+	TSC_hg19_v1_chr4_-_119757254 AK291765 AB018298 BC035761	269915	-	AJ001531|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##BC007761|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##NM_003619|PRSS12|8492|protease, serine, 12 (neurotrypsin, motopsin)##BC017993|SNHG8|100093630|small nucleolar RNA host gene 8 (non-protein coding)##BC039555|SNHG8|100093630|small nucleolar RNA host gene 8 (non-protein coding)##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK024248|LOC729218|729218|uncharacterized LOC729218##AK055555|METTL14|57721|methyltransferase like 14##AB046847|METTL14|57721|methyltransferase like 14##BC006565|METTL14|57721|methyltransferase like 14##BC007449|METTL14|57721|methyltransferase like 14##NM_020961|METTL14|57721|methyltransferase like 14##AK291765|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##AB018298|SEC24D|9871|SEC24 family, member D (S. cerevisiae)##BC035761|SEC24D|9871|SEC24 family, member D (S. cerevisiae)	0.917767	0.0	denovo_WM_7:-45:0.406	denovo_WM_7:-46:0.354
chr1	70675274	70675396	reg1009233.p1	4.496	+	TSC_hg19_v1_chr1_+_70671381 BC032727 AK310447 AK311184 BC040436 M74002 AK300147 AK310666	-3927	+	TSC_hg19_v1_chr1_+_70671371 BC022815 NM_001190987 NM_004768	-3984	+	TSC_hg19_v1_chr1_-_70671263 AK022951 NM_017768	-4024	-	TSC_hg19_v1_chr1_+_70687062 BC017359	11706	+	TSC_hg19_v1_chr1_+_70687159 AK301670 BC002784 BC009840 CU691872	11873	+	TSC_hg19_v1_chr1_-_70820406 BC016937 BC028840 AL136717 NM_030816	145070	-	BC032727|SRSF11|9295|serine/arginine-rich splicing factor 11##AK310447|SRSF11|9295|serine/arginine-rich splicing factor 11##AK311184|SRSF11|9295|serine/arginine-rich splicing factor 11##BC040436|SRSF11|9295|serine/arginine-rich splicing factor 11##M74002|SRSF11|9295|serine/arginine-rich splicing factor 11##AK300147|SRSF11|9295|serine/arginine-rich splicing factor 11##AK310666|SRSF11|9295|serine/arginine-rich splicing factor 11##BC022815|SRSF11|9295|serine/arginine-rich splicing factor 11##NM_001190987|SRSF11|9295|serine/arginine-rich splicing factor 11##NM_004768|SRSF11|9295|serine/arginine-rich splicing factor 11##AK022951|LRRC40|55631|leucine rich repeat containing 40##NM_017768|LRRC40|55631|leucine rich repeat containing 40##BC017359|SRSF11|9295|serine/arginine-rich splicing factor 11##AK301670|SRSF11|9295|serine/arginine-rich splicing factor 11##BC002784|SRSF11|9295|serine/arginine-rich splicing factor 11##BC009840|SRSF11|9295|serine/arginine-rich splicing factor 11##BC016937|ANKRD13C|81573|ankyrin repeat domain 13C##BC028840|ANKRD13C|81573|ankyrin repeat domain 13C##AL136717|ANKRD13C|81573|ankyrin repeat domain 13C##NM_030816|ANKRD13C|81573|ankyrin repeat domain 13C	1.269531	0.0	
chr19	35946716	35946812	reg1012690.p1	4.496	+	AB378083 AB464537 BC096198 BC096199 BC096200 BC096201 NM_005306 BC095535	-6147	+	AK290710 NM_005304 BC035657	-97270	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	-104314	+	AM392574 AM392667 AM392672 AM392738 AM392847 AM392851 AM393397 AM393477 AY359007 HQ258707 BC130501 NM_001244847 NM_207392	34624	-	AY622964 AY789707 AF086315 AL832080 NM_001035516	46041	-	AY789698 AY789699 AY789700 AY789701 AY789702 AY789703 AY789704 AY789705 AY789706 BC011886 TSC_hg19_v1_chr19_-_36001373 AK096215 AK304668 AK316475 EF158323 NM_001126059 EF158324 EF158325 EF158326	54609	-	AB378083|FFAR2|2867|free fatty acid receptor 2##BC096198|FFAR2|2867|free fatty acid receptor 2##BC096199|FFAR2|2867|free fatty acid receptor 2##BC096200|FFAR2|2867|free fatty acid receptor 2##BC096201|FFAR2|2867|free fatty acid receptor 2##NM_005306|FFAR2|2867|free fatty acid receptor 2##BC095535|FFAR2|2867|free fatty acid receptor 2##AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3##NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##AM392574|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392667|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392672|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392738|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392847|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392851|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393397|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393477|KRTDAP|388533|keratinocyte differentiation-associated protein##AY359007|KRTDAP|388533|keratinocyte differentiation-associated protein##HQ258707|KRTDAP|388533|keratinocyte differentiation-associated protein##BC130501|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_001244847|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_207392|KRTDAP|388533|keratinocyte differentiation-associated protein##AY622964|DMKN|93099|dermokine##AY789707|DMKN|93099|dermokine##AF086315|DMKN|93099|dermokine##AL832080|DMKN|93099|dermokine##NM_001035516|DMKN|93099|dermokine##AY789698|DMKN|93099|dermokine##AY789699|DMKN|93099|dermokine##AY789700|DMKN|93099|dermokine##AY789701|DMKN|93099|dermokine##AY789702|DMKN|93099|dermokine##AY789703|DMKN|93099|dermokine##AY789704|DMKN|93099|dermokine##AY789705|DMKN|93099|dermokine##AY789706|DMKN|93099|dermokine##BC011886|DMKN|93099|dermokine##AK096215|DMKN|93099|dermokine##AK304668|DMKN|93099|dermokine##AK316475|DMKN|93099|dermokine##EF158323|DMKN|93099|dermokine##NM_001126059|DMKN|93099|dermokine##EF158324|DMKN|93099|dermokine##EF158325|DMKN|93099|dermokine##EF158326|DMKN|93099|dermokine	0.992577	0.327699	CTCF.p2:-62:0.328
chr2	7862523	7862701	reg1015380.p1	4.496	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-805025	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-844749	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-855909	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	959591	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1115107	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	1281209	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	1.004642	0.0	denovo_WM_7:27:0.848
chr6	112167923	112168064	reg1003987.p2	4.496	+	BC032496 NM_153048	-87685	-	AB451293 AB451426 AB528738 CU689398 S74774 NM_153047	-126735	-	NM_001164281 NM_147686	-240520	-	M14676 TSC_hg19_v1_chr6_-_112194641 M14333	26542	-	TSC_hg19_v1_chr6_-_112194648 NM_002037	26662	-	BC012028 NM_003880 BC035250 NM_198239 BC105940 BC105941 AY358349 AF100781 AY358350 AB075040	207424	+	BC032496|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153048|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451293|FYN|2534|FYN oncogene related to SRC, FGR, YES##AB451426|FYN|2534|FYN oncogene related to SRC, FGR, YES##S74774|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_153047|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_001164281|TRAF3IP2|10758|TRAF3 interacting protein 2##NM_147686|TRAF3IP2|10758|TRAF3 interacting protein 2##M14676|FYN|2534|FYN oncogene related to SRC, FGR, YES##M14333|FYN|2534|FYN oncogene related to SRC, FGR, YES##NM_002037|FYN|2534|FYN oncogene related to SRC, FGR, YES##BC012028|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_003880|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC035250|WISP3|8838|WNT1 inducible signaling pathway protein 3##NM_198239|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105940|WISP3|8838|WNT1 inducible signaling pathway protein 3##BC105941|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358349|WISP3|8838|WNT1 inducible signaling pathway protein 3##AF100781|WISP3|8838|WNT1 inducible signaling pathway protein 3##AY358350|WISP3|8838|WNT1 inducible signaling pathway protein 3##AB075040|WISP3|8838|WNT1 inducible signaling pathway protein 3	0.0	0.0	
chr11	125387278	125387430	reg1012147.p1	4.495	+	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	-21213	-	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	-352728	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	-352776	+	TSC_hg19_v1_chr11_+_125439294 NM_001007277 NM_004879	51941	+	TSC_hg19_v1_chr11_+_125439332 AB209820	51971	+	TSC_hg19_v1_chr11_+_125439353 AK223029 AK296620 AK301556	52001	+	U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_001007277|EI24|9538|etoposide induced 2.4 mRNA##NM_004879|EI24|9538|etoposide induced 2.4 mRNA##AB209820|EI24|9538|etoposide induced 2.4 mRNA##AK223029|EI24|9538|etoposide induced 2.4 mRNA##AK296620|EI24|9538|etoposide induced 2.4 mRNA##AK301556|EI24|9538|etoposide induced 2.4 mRNA	0.98764	0.0	denovo_WM_7:-21:0.424	denovo_WM_7:-22:0.424
chr11	90321232	90321348	reg1012684.p1	4.495	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-336880	+	AK290231 NM_001144073 NM_012124	-364759	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-365088	-	NM_001008781	1763971	+	BC069163 NM_005959 U25341 AY521019	2381549	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2609697	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.996253	0.0	denovo_WM_7:-4:0.546
chr15	96870368	96870516	reg1008626.p1	4.495	+	BC106083 NM_001145155 FM208183	-1281	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-1000123	-	NM_001159644 BC025708 BC111024 AK002037	-1971133	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	3535	+	AK316086 NM_001145156	5351	+	NM_001145157	6126	+	BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.997167	0.0	denovo_WM_7:-25:0.976
chr17	30655998	30656092	reg1011737.p1	4.495	+	AJ313480 BC100975 BC100976 BC100978 NM_138328 BC100977	-62851	+	TSC_hg19_v1_chr17_+_30469588 BC092401 BC068463 AY094972 BC125104 BC125105 AL136929 BC029029 AK294407 AB527368 AM393207 BC146694 AJ517412	-186406	+	TSC_hg19_v1_chr17_+_30469544 BC110895	-186500	+	TSC_hg19_v1_chr17_-_30669193 AF052093 CU691078 BC054035 BC047325 BC026017 BC035715 AF305686 NM_022344	13162	-	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	21111	+	TSC_hg19_v1_chr17_+_30677178 AK298950 AK226172	21136	+	AJ313480|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100975|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100976|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100978|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##NM_138328|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100977|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC092401|RHOT1|55288|ras homolog gene family, member T1##BC068463|RHOT1|55288|ras homolog gene family, member T1##AY094972|RHOT1|55288|ras homolog gene family, member T1##BC125104|RHOT1|55288|ras homolog gene family, member T1##BC125105|RHOT1|55288|ras homolog gene family, member T1##AL136929|RHOT1|55288|ras homolog gene family, member T1##BC029029|RHOT1|55288|ras homolog gene family, member T1##AK294407|RHOT1|55288|ras homolog gene family, member T1##AM393207|RHOT1|55288|ras homolog gene family, member T1##BC146694|RHOT1|55288|ras homolog gene family, member T1##AJ517412|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1##AF052093|C17orf75|64149|chromosome 17 open reading frame 75##BC054035|C17orf75|64149|chromosome 17 open reading frame 75##BC047325|C17orf75|64149|chromosome 17 open reading frame 75##BC026017|C17orf75|64149|chromosome 17 open reading frame 75##BC035715|C17orf75|64149|chromosome 17 open reading frame 75##AF305686|C17orf75|64149|chromosome 17 open reading frame 75##NM_022344|C17orf75|64149|chromosome 17 open reading frame 75##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207##AK298950|ZNF207|7756|zinc finger protein 207##AK226172|ZNF207|7756|zinc finger protein 207	0.996942	0.0	denovo_WM_7:51:0.841
chr19	11082003	11082183	reg1011968.p1	4.495	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-10269	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-10343	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-10378	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	12783	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	117984	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	118039	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	0.988925	0.0	denovo_WM_7:81:0.431	denovo_WM_7:82:0.431
chr21	43706149	43706305	reg1014386.p2	4.495	+	AK298491 AF323664 NM_207174	-66259	+	TSC_hg19_v1_chr21_+_43639249 AK292152 BC029158 NM_004915 NM_016818 AF323663 EU832827 GQ129336 X91249 DQ891343 EU176570	-66934	+	AF323662 NM_207629	-70041	+	TSC_hg19_v1_chr21_+_43710190 AF038175	3986	+	L08044 DQ891963 DQ895153 L15203 BC017859 TSC_hg19_v1_chr21_-_43735520	29264	-	NM_003226 AF432265	29505	-	AK298491|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323664|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207174|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AK292152|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##BC029158|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_004915|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_016818|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323663|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##EU832827|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##GQ129336|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##X91249|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##DQ891343|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##EU176570|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF323662|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##NM_207629|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##AF038175|ABCG1|9619|ATP-binding cassette, sub-family G (WHITE), member 1##L08044|TFF3|7033|trefoil factor 3 (intestinal)##DQ891963|TFF3|7033|trefoil factor 3 (intestinal)##DQ895153|TFF3|7033|trefoil factor 3 (intestinal)##L15203|TFF3|7033|trefoil factor 3 (intestinal)##BC017859|TFF3|7033|trefoil factor 3 (intestinal)##NM_003226|TFF3|7033|trefoil factor 3 (intestinal)##AF432265|TFF3|7033|trefoil factor 3 (intestinal)	0.343749	0.0	denovo_WM_7:24:0.344
chr22	27101530	27101663	reg1014495.p1	4.495	+	TSC_hg19_v1_chr22_+_27068725 AK026502	-32856	+	TSC_hg19_v1_chr22_+_27053392 AB263414 AB263415 AB263416 AB263417 AK098833	-48124	+	BC069404 CR456424 NM_001886 U59057 AB528112 CU012985 CU013273 BC096171 BC096172 BC096173 BC096174	-83665	+	TSC_hg19_v1_chr22_-_28197481 NM_002430 X82209	1095881	-	TSC_hg19_v1_chr22_-_28315184 AB528209 CU013141 CU013429 CU689164 AK302367	1213578	-	TSC_hg19_v1_chr22_-_28315203 BC031427	1213611	-	AK026502|LOC100507637|100507637|uncharacterized LOC100507637##AB263414|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AB263415|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AB263416|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AB263417|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AK098833|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##BC069404|CRYBA4|1413|crystallin, beta A4##CR456424|CRYBA4|1413|crystallin, beta A4##NM_001886|CRYBA4|1413|crystallin, beta A4##U59057|CRYBA4|1413|crystallin, beta A4##CU012985|CRYBA4|1413|crystallin, beta A4##CU013273|CRYBA4|1413|crystallin, beta A4##BC096171|CRYBA4|1413|crystallin, beta A4##BC096172|CRYBA4|1413|crystallin, beta A4##BC096173|CRYBA4|1413|crystallin, beta A4##BC096174|CRYBA4|1413|crystallin, beta A4##NM_002430|MN1|4330|meningioma (disrupted in balanced translocation) 1##X82209|MN1|4330|meningioma (disrupted in balanced translocation) 1##CU013141|PITPNB|23760|phosphatidylinositol transfer protein, beta##CU013429|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK302367|PITPNB|23760|phosphatidylinositol transfer protein, beta##BC031427|PITPNB|23760|phosphatidylinositol transfer protein, beta	0.0	0.0	
chr3	27759654	27759779	reg1012607.p2	4.495	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-233786	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-233891	-	AF047033 AF089726 NM_003615	-261472	-	AB031038 BC131712 NM_005442 AB463608 BC037568	4077	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	4485	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	523382	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	0.0	0.0	
chr6_mann_hap4	3496279	3496380	reg1010762.p1	4.495	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.008085	0.0	denovo_WM_7:-26:0.621	denovo_WM_7:-27:0.297
chr9	119267236	119267339	reg1013267.p1	4.495	+	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	-351217	+	AB022761 NM_017418	-1363191	+	AB210038 TSC_hg19_v1_chr9_-_117880433 AK304015 X78565 NM_002160	-1386814	-	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	182175	-	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	182319	+	TSC_hg19_v1_chr9_-_120177318 AB014534 BC146756 NM_014010	910026	-	NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##AB022761|DEC1|50514|deleted in esophageal cancer 1##NM_017418|DEC1|50514|deleted in esophageal cancer 1##AB210038|TNC|3371|tenascin C##AK304015|TNC|3371|tenascin C##X78565|TNC|3371|tenascin C##NM_002160|TNC|3371|tenascin C##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32##AB014534|ASTN2|23245|astrotactin 2##BC146756|ASTN2|23245|astrotactin 2##NM_014010|ASTN2|23245|astrotactin 2	0.99696	0.0	
chr17	64702265	64702445	reg1013720.p1	4.494	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-403428	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-403605	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-476830	-	AK290171 TSC_hg19_v1_chr17_+_64831234	128880	+	BC101633 NM_145811 BC101607 AF361351 AF458898	171065	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	258534	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.0	0.0	
chr19	39990480	39990660	reg1010438.p2	4.494	+	TSC_hg19_v1_chr19_+_39989603 BC000218 BC011850 DQ891847 DQ895035	-963	+	TSC_hg19_v1_chr19_+_39989585 AK075302	-981	+	AK308460 TSC_hg19_v1_chr19_+_39989556 NM_016941 NM_203486	-1025	+	AY324825 NM_182704 BC117331	15199	+	TSC_hg19_v1_chr19_-_40023460 BC040157 BC051333 AK096263 NM_152361 BC009725	32917	-	TSC_hg19_v1_chr19_-_40030800 AY251272 BC030137 AK128468 NM_153232	40250	-	BC000218|DLL3|10683|delta-like 3 (Drosophila)##DQ891847|DLL3|10683|delta-like 3 (Drosophila)##DQ895035|DLL3|10683|delta-like 3 (Drosophila)##AK075302|DLL3|10683|delta-like 3 (Drosophila)##AK308460|DLL3|10683|delta-like 3 (Drosophila)##NM_016941|DLL3|10683|delta-like 3 (Drosophila)##NM_203486|DLL3|10683|delta-like 3 (Drosophila)##AY324825|SELV|348303|selenoprotein V##NM_182704|SELV|348303|selenoprotein V##BC117331|SELV|348303|selenoprotein V##BC040157|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##BC051333|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##AK096263|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##NM_152361|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##BC009725|EID2B|126272|EP300 interacting inhibitor of differentiation 2B##AY251272|EID2|163126|EP300 interacting inhibitor of differentiation 2##BC030137|EID2|163126|EP300 interacting inhibitor of differentiation 2##AK128468|EID2|163126|EP300 interacting inhibitor of differentiation 2##NM_153232|EID2|163126|EP300 interacting inhibitor of differentiation 2	0.999479	0.0	denovo_WM_7:-67:0.762
chr2	109191782	109191883	reg1002005.p2	4.494	+	TSC_hg19_v1_chr2_+_109150925 AK314217	-40889	+	TSC_hg19_v1_chr2_+_109150916 NM_001193483 AK296992 AF527761	-40967	+	TSC_hg19_v1_chr2_-_109150636 BC004487 AK095987	-41187	-	TSC_hg19_v1_chr2_+_109204761 NM_004987 U09284	12924	+	TSC_hg19_v1_chr2_+_109204792 AF527763	12953	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	13137	+	AK314217|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193483|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK296992|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527761|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC004487|FLJ38668|644903|uncharacterized LOC644903##AK095987|FLJ38668|644903|uncharacterized LOC644903##NM_004987|LIMS1|3987|LIM and senescent cell antigen-like domains 1##U09284|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527763|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1	0.0	0.0	
chr3	27434591	27434697	reg1012263.p1	4.494	+	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	-23731	-	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-770344	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1603064	+	AF047033 AF089726 NM_003615	63600	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	91181	-	TSC_hg19_v1_chr3_-_27525893 AK309734	91286	-	AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.0	0.018911	
chr7	81977571	81977751	reg1005263.p2	4.494	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-578287	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1428987	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1429227	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	95185	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	95419	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	814208	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	0.0	0.0	
chr9	46987798	46987893	reg1009316.p1	4.494	+	TSC_hg19_v1_chr9_+_45441926 BC006438	-1545919	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-3303002	+	NM_001145196	-3357116	-	BC040528 NM_001113541 NM_015667	18521764	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	19469456	+	TSC_hg19_v1_chr9_-_66458549 BC065527 BC011779	19470651	-	BC006438|LOC100132167|100132167|uncharacterized LOC100132167##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.99746	0.0	denovo_WM_7:-24:0.493	denovo_WM_7:-25:0.493
chr10	23012871	23013004	reg1006636.p2	4.493	+	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	-9447	-	AK294817 TSC_hg19_v1_chr10_-_23003038	-9900	-	TSC_hg19_v1_chr10_+_22726003 AK295718	-286938	+	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	204044	+	BC117471 BC130380 NM_012228 BC018030 TSC_hg19_v1_chr10_+_23384507 AF151889 BC066305 AF122004 EU446941	371546	+	AB463998 NM_178161	468521	+	BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3##BC117471|MSRB2|22921|methionine sulfoxide reductase B2##BC130380|MSRB2|22921|methionine sulfoxide reductase B2##NM_012228|MSRB2|22921|methionine sulfoxide reductase B2##BC018030|MSRB2|22921|methionine sulfoxide reductase B2##AF151889|MSRB2|22921|methionine sulfoxide reductase B2##BC066305|MSRB2|22921|methionine sulfoxide reductase B2##AF122004|MSRB2|22921|methionine sulfoxide reductase B2##EU446941|MSRB2|22921|methionine sulfoxide reductase B2##NM_178161|PTF1A|256297|pancreas specific transcription factor, 1a	0.0	0.0	
chr12	47426534	47426634	reg1012682.p1	4.493	+	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	-206828	-	TSC_hg19_v1_chr12_-_46766619 NM_018976	-659981	-	TSC_hg19_v1_chr12_-_46766555 AK291644 BC040342 AK001700 AJ344099 AF298897	-660295	-	TSC_hg19_v1_chr12_+_47473404 BC072670	46813	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	46999	-	BC008360 NM_138371	183467	+	AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##NM_018976|SLC38A2|54407|solute carrier family 38, member 2##AK291644|SLC38A2|54407|solute carrier family 38, member 2##BC040342|SLC38A2|54407|solute carrier family 38, member 2##AK001700|SLC38A2|54407|solute carrier family 38, member 2##AJ344099|SLC38A2|54407|solute carrier family 38, member 2##AF298897|SLC38A2|54407|solute carrier family 38, member 2##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC008360|FAM113B|91523|family with sequence similarity 113, member B##NM_138371|FAM113B|91523|family with sequence similarity 113, member B	0.0	0.446427	CTCF.p2:-44:0.446
chr14	93685578	93685758	reg1015851.p2	4.493	+	TSC_hg19_v1_chr14_+_93673628 AB590826 BC051819 BX248249	-12034	+	BC017013 TSC_hg19_v1_chr14_+_93673625	-12044	+	TSC_hg19_v1_chr14_+_93673600 BC015046 AK315492	-12072	+	TSC_hg19_v1_chr14_-_93799368 AB040958 AK001510	113697	-	TSC_hg19_v1_chr14_-_93799376 AK291422 BC141850 BX248762 NM_001002860 NM_018167 BC047071	113736	-	AK125327 NM_020818	113896	+	BC051819|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BX248249|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC017013|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC015046|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AK315492|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AB040958|BTBD7|55727|BTB (POZ) domain containing 7##AK001510|BTBD7|55727|BTB (POZ) domain containing 7##AK291422|BTBD7|55727|BTB (POZ) domain containing 7##BC141850|BTBD7|55727|BTB (POZ) domain containing 7##BX248762|BTBD7|55727|BTB (POZ) domain containing 7##NM_001002860|BTBD7|55727|BTB (POZ) domain containing 7##NM_018167|BTBD7|55727|BTB (POZ) domain containing 7##BC047071|BTBD7|55727|BTB (POZ) domain containing 7##AK125327|UNC79|57578|unc-79 homolog (C. elegans)##NM_020818|UNC79|57578|unc-79 homolog (C. elegans)	0.0	0.795656	CTCF.p2:-11:0.796
chr15	31195419	31195554	reg1011570.p1	4.493	+	BC105788 NM_001039841	-276608	+	TSC_hg19_v1_chr15_+_30918372 BC071990	-277100	+	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	-509774	-	BC047882 NM_001146095 NM_001146094 NM_001146096 NM_014967 TSC_hg19_v1_chr15_+_31196088 BX647391 AK290987	588	+	CR936734 CR936727 TSC_hg19_v1_chr15_+_31196114 AB023235	631	+	AK000320 AB528758 AM392869 TSC_hg19_v1_chr15_-_31283808 BC094750 BC063296 NM_017762	88281	-	BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC047882|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146095|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146094|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146096|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_014967|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BX647391|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK290987|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936734|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936727|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AB023235|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK000320|MTMR10|54893|myotubularin related protein 10##AM392869|MTMR10|54893|myotubularin related protein 10##BC094750|MTMR10|54893|myotubularin related protein 10##BC063296|MTMR10|54893|myotubularin related protein 10##NM_017762|MTMR10|54893|myotubularin related protein 10	1.037058	0.0	
chr16	2319002	2319105	reg1008162.p1	4.493	+	NM_080594 TSC_hg19_v1_chr16_-_2318415	-633	-	TSC_hg19_v1_chr16_-_2318393 AK316132	-661	-	TSC_hg19_v1_chr16_-_2318096 BC001659 BC001838 AF274003 AK289955 AK303100 AK293343	-944	-	U66675 TSC_hg19_v1_chr16_-_2336925	17846	-	AK310864 U78735 TSC_hg19_v1_chr16_-_2390699	71594	-	TSC_hg19_v1_chr16_-_2390730 BC151840	71669	-	NM_080594|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK316132|RNPS1|10921|RNA binding protein S1, serine-rich domain##BC001659|RNPS1|10921|RNA binding protein S1, serine-rich domain##BC001838|RNPS1|10921|RNA binding protein S1, serine-rich domain##AF274003|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK289955|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK303100|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK293343|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK310864|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##U78735|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##BC151840|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3	0.997199	0.0	denovo_WM_7:64:0.976
chr17	39819086	39819235	reg1012498.p1	4.493	+	AB528302 DQ891101 DQ894283 BC072018 BC072019 BC011901 X62571 BC000159 BC056421 AK304373 AK095342 NM_000422	-38339	-	S79867 DQ891307 DQ896818 AF061812 BC039169 AK290853 AK309296 AK309278 NM_005557	-50152	-	BT007186 AB527765 DQ890733 DQ892997 DQ893905 BC042437 BC002690 BC019097 BC094830 AK309280 NM_000526	-76045	-	NM_005801 TSC_hg19_v1_chr17_+_39845138 AL050005 AK311862	25973	+	AK311209 TSC_hg19_v1_chr17_+_39845141	25981	+	TSC_hg19_v1_chr17_+_39845142 BC005118 L26247 AF083441 BC008710 AF100737 AJ012375 DQ896700 EU176404 BT006645 CR457051	26056	+	DQ891101|KRT17|3872|keratin 17##DQ894283|KRT17|3872|keratin 17##BC072018|KRT17|3872|keratin 17##BC072019|KRT17|3872|keratin 17##BC011901|KRT17|3872|keratin 17##X62571|KRT17|3872|keratin 17##BC000159|KRT17|3872|keratin 17##BC056421|KRT17|3872|keratin 17##AK304373|KRT17|3872|keratin 17##AK095342|KRT17|3872|keratin 17##NM_000422|KRT17|3872|keratin 17##S79867|KRT16|3868|keratin 16##DQ891307|KRT16|3868|keratin 16##DQ896818|KRT16|3868|keratin 16##AF061812|KRT16|3868|keratin 16##BC039169|KRT16|3868|keratin 16##AK290853|KRT16|3868|keratin 16##NM_005557|KRT16|3868|keratin 16##BT007186|KRT14|3861|keratin 14##DQ890733|KRT14|3861|keratin 14##DQ892997|KRT14|3861|keratin 14##DQ893905|KRT14|3861|keratin 14##BC042437|KRT14|3861|keratin 14##BC002690|KRT14|3861|keratin 14##BC019097|KRT14|3861|keratin 14##BC094830|KRT14|3861|keratin 14##NM_000526|KRT14|3861|keratin 14##NM_005801|EIF1|10209|eukaryotic translation initiation factor 1##AL050005|EIF1|10209|eukaryotic translation initiation factor 1##AK311862|EIF1|10209|eukaryotic translation initiation factor 1##AK311209|EIF1|10209|eukaryotic translation initiation factor 1##BC005118|EIF1|10209|eukaryotic translation initiation factor 1##L26247|EIF1|10209|eukaryotic translation initiation factor 1##AF083441|EIF1|10209|eukaryotic translation initiation factor 1##BC008710|EIF1|10209|eukaryotic translation initiation factor 1##AF100737|EIF1|10209|eukaryotic translation initiation factor 1##AJ012375|EIF1|10209|eukaryotic translation initiation factor 1##DQ896700|EIF1|10209|eukaryotic translation initiation factor 1##EU176404|EIF1|10209|eukaryotic translation initiation factor 1##BT006645|EIF1|10209|eukaryotic translation initiation factor 1##CR457051|EIF1|10209|eukaryotic translation initiation factor 1	0.0	1.946542	CTCF.p2:-22:0.997	CTCF.p2:-84:0.950
chr7	87674903	87675083	reg1012904.p2	4.493	+	TSC_hg19_v1_chr7_+_87563605 BC036029 BC092465 NM_004194 NM_016351 NM_021721 NM_021722 NM_021723 AK291010 BC062433 BC125118 BC125117 AF073291 AF155381 AF155382	-111410	+	AK302010 TSC_hg19_v1_chr7_+_87505937 BC022811 CU690272	-169013	+	BC036045 TSC_hg19_v1_chr7_+_87505839 AK292569 AF160249 BC014909 AF160876 BC035632 AK303175 BC047693	-169189	+	AB464235 L12387 TSC_hg19_v1_chr7_-_87849352 AK295225 BC011025 M32886	174359	-	TSC_hg19_v1_chr7_-_87849391 AK129770 AK310366 NM_003130	174412	-	TSC_hg19_v1_chr7_-_87856292 AK296601 NM_198901	181301	-	BC036029|ADAM22|53616|ADAM metallopeptidase domain 22##BC092465|ADAM22|53616|ADAM metallopeptidase domain 22##NM_004194|ADAM22|53616|ADAM metallopeptidase domain 22##NM_016351|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021721|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021722|ADAM22|53616|ADAM metallopeptidase domain 22##NM_021723|ADAM22|53616|ADAM metallopeptidase domain 22##AK291010|ADAM22|53616|ADAM metallopeptidase domain 22##BC062433|ADAM22|53616|ADAM metallopeptidase domain 22##BC125118|ADAM22|53616|ADAM metallopeptidase domain 22##BC125117|ADAM22|53616|ADAM metallopeptidase domain 22##AF073291|ADAM22|53616|ADAM metallopeptidase domain 22##AF155381|ADAM22|53616|ADAM metallopeptidase domain 22##AF155382|ADAM22|53616|ADAM metallopeptidase domain 22##AK302010|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC022811|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC036045|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK292569|DBF4|10926|DBF4 homolog (S. cerevisiae)##AF160249|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC014909|DBF4|10926|DBF4 homolog (S. cerevisiae)##AF160876|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC035632|DBF4|10926|DBF4 homolog (S. cerevisiae)##AK303175|DBF4|10926|DBF4 homolog (S. cerevisiae)##BC047693|DBF4|10926|DBF4 homolog (S. cerevisiae)##L12387|SRI|6717|sorcin##AK295225|SRI|6717|sorcin##BC011025|SRI|6717|sorcin##M32886|SRI|6717|sorcin##AK129770|SRI|6717|sorcin##AK310366|SRI|6717|sorcin##NM_003130|SRI|6717|sorcin##AK296601|SRI|6717|sorcin##NM_198901|SRI|6717|sorcin	0.0	0.0	
chr8	124546790	124546958	reg1014137.p2	4.493	+	BC120963 BC120964 BC024030 NM_148177	-2495	-	AK001066 NM_018024 AK225643 TSC_hg19_v1_chr8_+_124429026 AK293492 BC008781 AB528691 CU679103	-117848	+	CR749832 TSC_hg19_v1_chr8_-_124428591	-118276	-	AY059629 AJ420108 TSC_hg19_v1_chr8_-_124553447 AK056986 EF143260	6476	-	TSC_hg19_v1_chr8_-_124553499 NM_001242463 NM_058229	6607	-	AB196636 BC127886 NM_001081675	118303	-	BC120963|FBXO32|114907|F-box protein 32##BC120964|FBXO32|114907|F-box protein 32##BC024030|FBXO32|114907|F-box protein 32##NM_148177|FBXO32|114907|F-box protein 32##AK001066|WDYHV1|55093|WDYHV motif containing 1##NM_018024|WDYHV1|55093|WDYHV motif containing 1##AK225643|WDYHV1|55093|WDYHV motif containing 1##AK293492|WDYHV1|55093|WDYHV motif containing 1##BC008781|WDYHV1|55093|WDYHV motif containing 1##CR749832|ATAD2|29028|ATPase family, AAA domain containing 2##AY059629|FBXO32|114907|F-box protein 32##AJ420108|FBXO32|114907|F-box protein 32##AK056986|FBXO32|114907|F-box protein 32##EF143260|FBXO32|114907|F-box protein 32##NM_001242463|FBXO32|114907|F-box protein 32##NM_058229|FBXO32|114907|F-box protein 32##AB196636|KLHL38|340359|kelch-like 38 (Drosophila)##BC127886|KLHL38|340359|kelch-like 38 (Drosophila)##NM_001081675|KLHL38|340359|kelch-like 38 (Drosophila)	0.0	0.0	
chr9	114765946	114766088	reg1013741.p1	4.493	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-106550	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-106903	+	AL833535 NM_173521	-220242	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	171503	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	329270	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	329832	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.995025	0.0	
chr1	244215207	244215315	reg1010492.p2	4.492	+	TSC_hg19_v1_chr1_+_244214584 AK291408 AK293892 BC036677	-678	+	TSC_hg19_v1_chr1_+_244214553 NM_205768	-705	+	AL117525 NM_001206729	-208376	-	BC078175 AJ001388 NM_006352	1282	+	TSC_hg19_v1_chr1_+_244217286 AK310634	2034	+	BC054479 NM_001012970	300675	+	AK291408|ZNF238|10472|zinc finger protein 238##AK293892|ZNF238|10472|zinc finger protein 238##BC036677|ZNF238|10472|zinc finger protein 238##NM_205768|ZNF238|10472|zinc finger protein 238##AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC078175|ZNF238|10472|zinc finger protein 238##AJ001388|ZNF238|10472|zinc finger protein 238##NM_006352|ZNF238|10472|zinc finger protein 238##BC054479|C1orf100|200159|chromosome 1 open reading frame 100##NM_001012970|C1orf100|200159|chromosome 1 open reading frame 100	0.91337	0.0	denovo_WM_7:-1:0.750
chr17	68300214	68300355	reg1011020.p2	4.492	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-134588	+	BC033038 NM_170742	-199290	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-228854	+	TSC_hg19_v1_chr17_-_70116937 AL833139	1816654	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	1816875	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	1816886	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.0	0.0	
chr19	14472787	14472967	reg1003612.p2	4.492	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-155829	-	BC013275 BC072445 AK022001 TSC_hg19_v1_chr19_-_14260830 BC090949	-212077	-	TSC_hg19_v1_chr19_+_14247979 BX537706	-224886	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	19172	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	19378	+	TSC_hg19_v1_chr19_-_14529877 AK301847	57012	-	AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##BC013275|LPHN1|22859|latrophilin 1##BC072445|LPHN1|22859|latrophilin 1##AK022001|LPHN1|22859|latrophilin 1##BC090949|LPHN1|22859|latrophilin 1##BX537706|LOC100507373|100507373|uncharacterized LOC100507373##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.0	0.0	
chr2	176046482	176046606	reg1012504.p1	4.492	+	CR407601 EU832770 GQ129314 BC106881 U09813 NM_001002258 TSC_hg19_v1_chr2_-_176046438 AK311999 NM_001190329 NM_001689	-240	-	TSC_hg19_v1_chr2_-_176032932 BC026175 BC107698 DQ003036 DQ003037 DQ003038 DQ003039 DQ003040 DQ003041 DQ003042 DQ003043 DQ003044 DQ003045 DQ003046 DQ003047 DQ003048 DQ003049 NM_001880 AK128731 BX648469	-13649	-	AK289941 BC011393 NM_001822 TSC_hg19_v1_chr2_-_175870101 AB209788 AK300890 NM_001025201	-176531	-	TSC_hg19_v1_chr2_-_176866988 AB051502 AK056532 BC110329 BC105132 BC105134 BC143681 BC143683 AK302833 BC064661 NM_030650 CR936742	820431	-	NM_001080458	902145	-	TSC_hg19_v1_chr2_+_176957451 NM_000523 AB463753	911000	+	CR407601|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##EU832770|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##GQ129314|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC106881|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##U09813|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001002258|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##AK311999|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001190329|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001689|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC026175|ATF2|1386|activating transcription factor 2##BC107698|ATF2|1386|activating transcription factor 2##DQ003036|ATF2|1386|activating transcription factor 2##DQ003037|ATF2|1386|activating transcription factor 2##DQ003038|ATF2|1386|activating transcription factor 2##DQ003039|ATF2|1386|activating transcription factor 2##DQ003040|ATF2|1386|activating transcription factor 2##DQ003041|ATF2|1386|activating transcription factor 2##DQ003042|ATF2|1386|activating transcription factor 2##DQ003043|ATF2|1386|activating transcription factor 2##DQ003044|ATF2|1386|activating transcription factor 2##DQ003045|ATF2|1386|activating transcription factor 2##DQ003046|ATF2|1386|activating transcription factor 2##DQ003047|ATF2|1386|activating transcription factor 2##DQ003048|ATF2|1386|activating transcription factor 2##DQ003049|ATF2|1386|activating transcription factor 2##NM_001880|ATF2|1386|activating transcription factor 2##AK128731|ATF2|1386|activating transcription factor 2##BX648469|ATF2|1386|activating transcription factor 2##AK289941|CHN1|1123|chimerin (chimaerin) 1##BC011393|CHN1|1123|chimerin (chimaerin) 1##NM_001822|CHN1|1123|chimerin (chimaerin) 1##AB209788|CHN1|1123|chimerin (chimaerin) 1##AK300890|CHN1|1123|chimerin (chimaerin) 1##NM_001025201|CHN1|1123|chimerin (chimaerin) 1##AB051502|KIAA1715|80856|KIAA1715##AK056532|KIAA1715|80856|KIAA1715##BC110329|KIAA1715|80856|KIAA1715##BC105132|KIAA1715|80856|KIAA1715##BC105134|KIAA1715|80856|KIAA1715##BC143681|KIAA1715|80856|KIAA1715##BC143683|KIAA1715|80856|KIAA1715##AK302833|KIAA1715|80856|KIAA1715##BC064661|KIAA1715|80856|KIAA1715##NM_030650|KIAA1715|80856|KIAA1715##CR936742|KIAA1715|80856|KIAA1715##NM_001080458|EVX2|344191|even-skipped homeobox 2##NM_000523|HOXD13|3239|homeobox D13	0.052526	0.0	
chrX	106954427	106954577	reg1010884.p2	4.492	+	AK307748 AK312706 AK316467 TSC_hg19_v1_chrX_+_106871744 AK297968 BC001605 X15331 AK223169 DQ895833 EU176362 AB464022 CU674782	-82704	+	NM_001204402 NM_002764 TSC_hg19_v1_chrX_+_106871719 D00860	-82807	+	BC033510 NM_001169154 NM_173494	-504641	+	BC018148 Z50781 NM_001015881	5151	-	CR533450 EU831656 EU831739 TSC_hg19_v1_chrX_-_106960193 AK311834 AY007119 AK127938	5627	-	AF153603 AF228339 AB025432 AF183393 BC072446 TSC_hg19_v1_chrX_-_106960293 AL110191 NM_004089 CR933650	5779	-	AK307748|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK312706|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK316467|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK297968|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC001605|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##X15331|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK223169|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##DQ895833|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##EU176362|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_001204402|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_002764|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##D00860|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC033510|CXorf41|139212|chromosome X open reading frame 41##NM_001169154|CXorf41|139212|chromosome X open reading frame 41##NM_173494|CXorf41|139212|chromosome X open reading frame 41##BC018148|TSC22D3|1831|TSC22 domain family, member 3##Z50781|TSC22D3|1831|TSC22 domain family, member 3##NM_001015881|TSC22D3|1831|TSC22 domain family, member 3##CR533450|TSC22D3|1831|TSC22 domain family, member 3##EU831656|TSC22D3|1831|TSC22 domain family, member 3##EU831739|TSC22D3|1831|TSC22 domain family, member 3##AK311834|TSC22D3|1831|TSC22 domain family, member 3##AY007119|TSC22D3|1831|TSC22 domain family, member 3##AK127938|TSC22D3|1831|TSC22 domain family, member 3##AF153603|TSC22D3|1831|TSC22 domain family, member 3##AF228339|TSC22D3|1831|TSC22 domain family, member 3##AB025432|TSC22D3|1831|TSC22 domain family, member 3##AF183393|TSC22D3|1831|TSC22 domain family, member 3##BC072446|TSC22D3|1831|TSC22 domain family, member 3##AL110191|TSC22D3|1831|TSC22 domain family, member 3##NM_004089|TSC22D3|1831|TSC22 domain family, member 3##CR933650|TSC22D3|1831|TSC22 domain family, member 3	0.0	0.0	
chr16	8617816	8617939	reg1013769.p2	4.491	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	-1235127	+	AK001027 NM_001142334	-1794068	+	TSC_hg19_v1_chr16_+_6533765 BC033885	-2084102	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	97663	+	TSC_hg19_v1_chr16_+_8768473 NM_020686 BX537362 AK096146 BC031413 BC015628	150585	+	NM_000663 TSC_hg19_v1_chr16_+_8806841 BC013965	188958	+	AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22##NM_020686|ABAT|18|4-aminobutyrate aminotransferase##BX537362|ABAT|18|4-aminobutyrate aminotransferase##AK096146|ABAT|18|4-aminobutyrate aminotransferase##BC031413|ABAT|18|4-aminobutyrate aminotransferase##BC015628|ABAT|18|4-aminobutyrate aminotransferase##NM_000663|ABAT|18|4-aminobutyrate aminotransferase##BC013965|ABAT|18|4-aminobutyrate aminotransferase	0.0	0.984554	CTCF.p2:-57:0.985
chr18	23865024	23865090	reg1020030.p1	4.491	+	TSC_hg19_v1_chr18_+_23806444 NM_005640 AB234096	-58640	+	BC042820 NM_001025096 NM_001025097 NM_144662 BC025393 BC028371 BC028686 BC025389 BC047355 BC021713	-151209	+	AB527567 EU832762 GQ129305 AB300354 AB300355 AB300356 AB300357 AF230662 AF244972 AF257500 AF343880 BC096221 BC096222 BC096223 BC096224 CR542088 CR542103 X79201 TSC_hg19_v1_chr18_-_23670574 AK304305 AK316302 AK316338 AK299082 AK307923 AK289510 NM_001007559 NM_005637 AK301504	-194477	-	NM_001142730 TSC_hg19_v1_chr18_-_24128518	263453	-	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	264184	-	AF542549 NM_198991	355250	-	NM_005640|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AB234096|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##BC042820|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025096|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025097|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_144662|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025393|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028371|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028686|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025389|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC047355|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC021713|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##EU832762|SS18|6760|synovial sarcoma translocation, chromosome 18##GQ129305|SS18|6760|synovial sarcoma translocation, chromosome 18##AF244972|SS18|6760|synovial sarcoma translocation, chromosome 18##AF343880|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096221|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096222|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096223|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096224|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542088|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542103|SS18|6760|synovial sarcoma translocation, chromosome 18##X79201|SS18|6760|synovial sarcoma translocation, chromosome 18##AK304305|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316302|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316338|SS18|6760|synovial sarcoma translocation, chromosome 18##AK299082|SS18|6760|synovial sarcoma translocation, chromosome 18##AK307923|SS18|6760|synovial sarcoma translocation, chromosome 18##AK289510|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_001007559|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_005637|SS18|6760|synovial sarcoma translocation, chromosome 18##AK301504|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1##AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1	0.0	0.0	
chr2	113448519	113448634	reg1014100.p1	4.491	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-45056	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-106387	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	-106538	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	73646	-	NM_000575 BC035169	94396	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	145768	-	NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta	0.0	0.022383	
chr10	6442549	6442701	reg1014073.p2	4.490	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-197749	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-255713	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-255741	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	179636	-	TSC_hg19_v1_chr10_+_6622460 AY007155	179855	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1008625	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	1.993151	0.0	denovo_WM_7:-23:0.779	denovo_WM_7:63:0.477	denovo_WM_7:64:0.477
chr11	102326694	102326821	reg1012360.p1	4.490	+	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	-3144	-	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-108729	+	TSC_hg19_v1_chr11_+_102217944 AK303197	-108828	+	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	74702	-	AB527354 NM_004771 Y12779	169298	-	AB527320 AF195192 AY358752 NM_022122	249698	-	DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20##AF195192|MMP27|64066|matrix metallopeptidase 27##AY358752|MMP27|64066|matrix metallopeptidase 27##NM_022122|MMP27|64066|matrix metallopeptidase 27	0.996991	0.0	denovo_WM_7:45:0.313	denovo_WM_7:46:0.313	denovo_WM_7:47:0.313
chr12	58293230	58293361	reg1008128.p1	4.490	+	NM_005730	-52549	-	AK291289 TSC_hg19_v1_chr12_-_58240508 AK312413 AK311070 AF000152	-52783	-	TSC_hg19_v1_chr12_-_58240486 BC018922 AK310183	-52816	-	TSC_hg19_v1_chr12_+_58335326 BC033881 AF078164	42041	+	BC012776 NM_033276 BC115381 BC115382 TSC_hg19_v1_chr12_+_58335454	42165	+	AK301162 AY358295 NM_001136051	1020020	-	NM_005730|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK291289|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK312413|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AF000152|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##BC018922|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK310183|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##BC033881|XRCC6BP1|91419|XRCC6 binding protein 1##AF078164|XRCC6BP1|91419|XRCC6 binding protein 1##BC012776|XRCC6BP1|91419|XRCC6 binding protein 1##NM_033276|XRCC6BP1|91419|XRCC6 binding protein 1##BC115381|XRCC6BP1|91419|XRCC6 binding protein 1##BC115382|XRCC6BP1|91419|XRCC6 binding protein 1##AK301162|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##AY358295|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3##NM_001136051|LRIG3|121227|leucine-rich repeats and immunoglobulin-like domains 3	0.0	0.0	
chr6	3204502	3204622	reg1007083.p1	4.490	+	AY159127 CR541958 CU674602 AB528583 DQ892343 DQ895718 BC001194 TSC_hg19_v1_chr6_-_3157779 BC018780 X79535 AK308772 AK312621 NM_001069	-46816	-	TSC_hg19_v1_chr6_+_3118961 AK297518 NM_004332 AK314909 AL832502 AJ617684 X81372	-85611	+	BC126254 BC126256 HQ258488 NM_003804 U50062 AK304701	-127498	+	BT019930 CR456788 CU674662 BC063610 TSC_hg19_v1_chr6_-_3227888 AK308806 AK289433 AK297568 BC001352 NM_178012	23309	-	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	54596	+	TSC_hg19_v1_chr6_+_3259232 AK126623 AK095683	54677	+	AY159127|TUBB2A|7280|tubulin, beta 2A class IIa##CR541958|TUBB2A|7280|tubulin, beta 2A class IIa##DQ892343|TUBB2A|7280|tubulin, beta 2A class IIa##DQ895718|TUBB2A|7280|tubulin, beta 2A class IIa##BC001194|TUBB2A|7280|tubulin, beta 2A class IIa##BC018780|TUBB2A|7280|tubulin, beta 2A class IIa##X79535|TUBB2A|7280|tubulin, beta 2A class IIa##AK312621|TUBB2A|7280|tubulin, beta 2A class IIa##NM_001069|TUBB2A|7280|tubulin, beta 2A class IIa##AK297518|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##NM_004332|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AK314909|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AL832502|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AJ617684|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##X81372|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##BC126254|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##BC126256|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##HQ258488|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##NM_003804|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##U50062|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AK304701|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##BT019930|TUBB2B|347733|tubulin, beta 2B class IIb##CR456788|TUBB2B|347733|tubulin, beta 2B class IIb##BC063610|TUBB2B|347733|tubulin, beta 2B class IIb##AK308806|TUBB2B|347733|tubulin, beta 2B class IIb##AK289433|TUBB2B|347733|tubulin, beta 2B class IIb##AK297568|TUBB2B|347733|tubulin, beta 2B class IIb##BC001352|TUBB2B|347733|tubulin, beta 2B class IIb##NM_178012|TUBB2B|347733|tubulin, beta 2B class IIb##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK126623|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK095683|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4	1.90935	0.0	denovo_WM_7:-64:0.858	denovo_WM_7:-79:0.858
chr7	128648912	128649029	reg1014557.p1	4.490	+	EU258898 NM_001098627 DQ995494 AY504946 DQ277634	-68162	+	DQ995493 AY693669 BC004139 BC004201 DQ277633 NM_032643	-70712	+	AK293654 AY693665 AY693668 NM_001098629 NM_001098630 NM_001242452 DQ995492 U51127 AK297083 AY504947 AY693666 AY693667 EU258896	-70934	+	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	45925	-	TSC_hg19_v1_chr7_-_128695168 BC009923	46178	-	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	46235	-	EU258898|IRF5|3663|interferon regulatory factor 5##NM_001098627|IRF5|3663|interferon regulatory factor 5##DQ995494|IRF5|3663|interferon regulatory factor 5##AY504946|IRF5|3663|interferon regulatory factor 5##DQ277634|IRF5|3663|interferon regulatory factor 5##AY693669|IRF5|3663|interferon regulatory factor 5##BC004139|IRF5|3663|interferon regulatory factor 5##BC004201|IRF5|3663|interferon regulatory factor 5##DQ277633|IRF5|3663|interferon regulatory factor 5##NM_032643|IRF5|3663|interferon regulatory factor 5##AK293654|IRF5|3663|interferon regulatory factor 5##AY693665|IRF5|3663|interferon regulatory factor 5##AY693668|IRF5|3663|interferon regulatory factor 5##NM_001098629|IRF5|3663|interferon regulatory factor 5##NM_001098630|IRF5|3663|interferon regulatory factor 5##NM_001242452|IRF5|3663|interferon regulatory factor 5##DQ995492|IRF5|3663|interferon regulatory factor 5##U51127|IRF5|3663|interferon regulatory factor 5##AK297083|IRF5|3663|interferon regulatory factor 5##AY504947|IRF5|3663|interferon regulatory factor 5##AY693666|IRF5|3663|interferon regulatory factor 5##AY693667|IRF5|3663|interferon regulatory factor 5##EU258896|IRF5|3663|interferon regulatory factor 5##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3	0.0	0.0	
chr9	35759524	35759693	reg1011639.p1	4.490	+	DQ012170 BC071800 BC105274 NM_001044264	-5336	-	TSC_hg19_v1_chr9_+_35749334 D87447 BC001725	-10272	+	NM_001080496 TSC_hg19_v1_chr9_+_35749276 AK289566	-10327	+	AJ005282 NM_003995	32797	+	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	52592	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	55404	-	DQ012170|MSMP|692094|microseminoprotein, prostate associated##BC071800|MSMP|692094|microseminoprotein, prostate associated##BC105274|MSMP|692094|microseminoprotein, prostate associated##NM_001044264|MSMP|692094|microseminoprotein, prostate associated##D87447|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##BC001725|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##NM_001080496|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##AK289566|RGP1|9827|RGP1 retrograde golgi transport homolog (S. cerevisiae)##AJ005282|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##NM_003995|NPR2|4882|natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B)##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2	1.99363	0.0	denovo_WM_7:-17:0.358	denovo_WM_7:-18:0.269	denovo_WM_7:-34:0.289	denovo_WM_7:-35:0.378
chr1	25190993	25191134	reg1011218.p1	4.489	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-119058	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-119130	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-119232	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	65362	-	TSC_hg19_v1_chr1_-_25256761 AK301044	65676	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	65723	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.043961	0.0	
chr16	1330990	1331110	reg1013195.p1	4.489	+	NM_012217 BC069143	-24774	+	NM_003294 BC074974 BC074975 BC029356	-40359	+	BC065923 AK308208 BC029356 NM_024164 BC074974	-50872	-	NM_194260 NM_194261	28103	+	TSC_hg19_v1_chr16_+_1359631 NM_003345 NM_194259	28578	+	AK291118 TSC_hg19_v1_chr16_+_1359639	28592	+	NM_012217|TPSD1|23430|tryptase delta 1##BC069143|TPSD1|23430|tryptase delta 1##NM_003294|TPSAB1|7177|tryptase alpha/beta 1##BC074974|TPSAB1|7177|tryptase alpha/beta 1##BC074975|TPSAB1|7177|tryptase alpha/beta 1##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC065923|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##AK308208|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##NM_024164|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC074974|TPSAB1|7177|tryptase alpha/beta 1##NM_194260|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194261|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_003345|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194259|UBE2I|7329|ubiquitin-conjugating enzyme E2I##AK291118|UBE2I|7329|ubiquitin-conjugating enzyme E2I	0.998863	0.0	
chr16	70275046	70275201	reg1012086.p1	4.489	+	AF448856 BC039068 NM_173619 AL833339 AK074773 CU687316 BC062573	-67019	+	TSC_hg19_v1_chr16_+_70148247 AK292502 AK302987	-126876	+	AB082521 BC150251 NM_017990	-127595	+	TSC_hg19_v1_chr16_-_70285844 BC052252 NM_058219 BC039194	10710	-	BC011451 TSC_hg19_v1_chr16_-_70323364 AK299098	48244	-	TSC_hg19_v1_chr16_-_70323413 AK222824 AK225116 AK307782 D32050 NM_001605	48288	-	AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##BC039068|CLEC18C|283971|C-type lectin domain family 18, member C##NM_173619|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##BC062573|CLEC18C|283971|C-type lectin domain family 18, member C##AK292502|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##AK302987|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##AB082521|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##BC150251|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##NM_017990|PDPR|55066|pyruvate dehydrogenase phosphatase regulatory subunit##BC052252|EXOSC6|118460|exosome component 6##NM_058219|EXOSC6|118460|exosome component 6##BC011451|AARS|16|alanyl-tRNA synthetase##AK299098|AARS|16|alanyl-tRNA synthetase##AK222824|AARS|16|alanyl-tRNA synthetase##AK225116|AARS|16|alanyl-tRNA synthetase##AK307782|AARS|16|alanyl-tRNA synthetase##D32050|AARS|16|alanyl-tRNA synthetase##NM_001605|AARS|16|alanyl-tRNA synthetase	0.0	0.0	
chr4	40521068	40521162	reg1009724.p2	4.489	+	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-3157	-	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	-4531	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-183670	+	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	110750	-	AK304206 TSC_hg19_v1_chr4_-_40632775	111592	-	BC042401 NM_024677 BC036568 AK024063	230831	+	AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK304206|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7	0.918219	0.0	denovo_WM_7:-53:0.255	denovo_WM_7:-55:0.267
chr5	156701114	156701241	reg1011070.p1	4.489	+	BC011762 BC021008 NM_014376	-4821	+	TSC_hg19_v1_chr5_+_156693105 AL136549 NM_001037333 AK294220 AK295865 AK297401 AK303702 AB032994 AF160973 NM_001037332	-7925	+	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	-93260	+	AK289701 BC022570 NM_001001343	71523	-	TSC_hg19_v1_chr5_+_156820161 AK172724	119011	+	AK296972 NM_001099287 NM_001172292	185849	+	BC011762|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##BC021008|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_014376|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AL136549|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_001037333|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK294220|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK295865|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK297401|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK303702|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AB032994|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AF160973|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_001037332|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase##AK289701|FNDC9|408263|fibronectin type III domain containing 9##BC022570|FNDC9|408263|fibronectin type III domain containing 9##NM_001001343|FNDC9|408263|fibronectin type III domain containing 9##AK172724|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK296972|NIPAL4|348938|NIPA-like domain containing 4##NM_001099287|NIPAL4|348938|NIPA-like domain containing 4##NM_001172292|NIPAL4|348938|NIPA-like domain containing 4	0.997955	0.0	
chr7	5526586	5526734	reg1010977.p1	4.489	+	NM_001080495	-63484	-	AY129022 TSC_hg19_v1_chr7_-_5461555	-65119	-	TSC_hg19_v1_chr7_-_5460842 BC140723	-65754	-	CU692902 TSC_hg19_v1_chr7_-_5553380 AK057042 BC006426 BC024256 NM_024963	26691	-	TSC_hg19_v1_chr7_-_5553435 AK130444 AK294949	26767	-	M28424 V00478 TSC_hg19_v1_chr7_-_5567980 HQ154074 DQ407611 EF036500	41352	-	NM_001080495|TNRC18|84629|trinucleotide repeat containing 18##AY129022|TNRC18|84629|trinucleotide repeat containing 18##AK057042|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC006426|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC024256|FBXL18|80028|F-box and leucine-rich repeat protein 18##NM_024963|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK130444|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK294949|FBXL18|80028|F-box and leucine-rich repeat protein 18##M28424|ACTB|60|actin, beta##V00478|ACTB|60|actin, beta##DQ407611|ACTB|60|actin, beta##EF036500|ACTB|60|actin, beta	0.0	0.979816	CTCF.p2:39:0.980
chr9	93564898	93565010	reg1002572.p1	4.489	+	TSC_hg19_v1_chr9_+_93564206 NM_001174168 BC011399	-739	+	TSC_hg19_v1_chr9_+_93564100 AK290927	-839	+	TSC_hg19_v1_chr9_+_93564079 L28824	-876	+	NM_001174167 X73568	24779	+	TSC_hg19_v1_chr9_-_94124185 AB528075 AM393420 CU676666 DQ892036 DQ895227 X79888 AK302453	559216	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	559245	-	NM_001174168|SYK|6850|spleen tyrosine kinase##BC011399|SYK|6850|spleen tyrosine kinase##AK290927|SYK|6850|spleen tyrosine kinase##L28824|SYK|6850|spleen tyrosine kinase##NM_001174167|SYK|6850|spleen tyrosine kinase##X73568|SYK|6850|spleen tyrosine kinase##AM393420|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ892036|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##DQ895227|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##X79888|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##AK302453|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase	0.0	0.0	
chr10	27026412	27026592	reg1001030.p1	4.488	+	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-39856	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-39918	-	TSC_hg19_v1_chr10_+_26727703 AY152730	-298796	+	TSC_hg19_v1_chr10_-_27057776 AK315914	31315	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	123338	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	123437	-	AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AY152730|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK315914|ABI1|10006|abl-interactor 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1	0.0	0.0	
chr14	94603200	94603299	reg1012135.p1	4.488	+	TSC_hg19_v1_chr14_-_94595942 NM_032036	-7309	-	BC032626 TSC_hg19_v1_chr14_-_94595922 AF208232	-7331	-	NM_001130080 NM_005532 TSC_hg19_v1_chr14_+_94577081 AK289535 AK097084 AK312089 BX647330 AJ294851 AY126456 AY126457 AY126458 BC015492	-26130	+	NM_020958 NM_058237 BC002650 BC068491 AB046842 AB385489 CU686649	37475	+	AF181467 NM_016186	156111	-	TSC_hg19_v1_chr14_-_94759564 AY358597 AK314877	156313	-	NM_032036|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##BC032626|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##AF208232|IFI27L2|83982|interferon, alpha-inducible protein 27-like 2##NM_001130080|IFI27|3429|interferon, alpha-inducible protein 27##NM_005532|IFI27|3429|interferon, alpha-inducible protein 27##AK289535|IFI27|3429|interferon, alpha-inducible protein 27##AK097084|IFI27|3429|interferon, alpha-inducible protein 27##AK312089|IFI27|3429|interferon, alpha-inducible protein 27##BX647330|IFI27|3429|interferon, alpha-inducible protein 27##AJ294851|IFI27|3429|interferon, alpha-inducible protein 27##AY126456|IFI27|3429|interferon, alpha-inducible protein 27##AY126457|IFI27|3429|interferon, alpha-inducible protein 27##AY126458|IFI27|3429|interferon, alpha-inducible protein 27##BC015492|IFI27|3429|interferon, alpha-inducible protein 27##NM_020958|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##NM_058237|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##BC002650|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##BC068491|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##AB046842|PPP4R4|57718|protein phosphatase 4, regulatory subunit 4##AF181467|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##NM_016186|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##AY358597|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10##AK314877|SERPINA10|51156|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	0.0	0.981229	CTCF.p2:-19:0.981
chr16	5091727	5091845	reg1009176.p1	4.488	+	TSC_hg19_v1_chr16_-_5083937 AK127952 AK314320 AK302916 AK025570 NM_016256	-7849	-	TSC_hg19_v1_chr16_-_5083927 AF187072 AK026122 BC012194	-7865	-	TSC_hg19_v1_chr16_+_5083673 AK055222	-8100	+	AK300708 TSC_hg19_v1_chr16_-_5115921	24134	-	TSC_hg19_v1_chr16_-_5115951 AK075242	24169	-	TSC_hg19_v1_chr16_-_5116030 BC033681 AY358483 NM_001098514 NM_152459	24301	-	AK127952|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK314320|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK302916|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK025570|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##NM_016256|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AF187072|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK026122|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##BC012194|NAGPA|51172|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase##AK055222|LOC100507589|100507589|uncharacterized LOC100507589##AK300708|C16orf89|146556|chromosome 16 open reading frame 89##AK075242|C16orf89|146556|chromosome 16 open reading frame 89##BC033681|C16orf89|146556|chromosome 16 open reading frame 89##AY358483|C16orf89|146556|chromosome 16 open reading frame 89##NM_001098514|C16orf89|146556|chromosome 16 open reading frame 89##NM_152459|C16orf89|146556|chromosome 16 open reading frame 89	0.020056	0.0	
chr22	39509991	39510128	reg1009317.p2	4.488	+	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	-16789	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	-36872	+	AK294810 NM_001006666 NM_145298	-73419	+	TSC_hg19_v1_chr22_-_39529023 BC128418	18988	-	DQ064603 AB528611 EU446785 CU690844 BC051773 TSC_hg19_v1_chr22_-_39548584 NM_175709 AK124408	38508	-	TSC_hg19_v1_chr22_-_39636906 NM_033016 X83705	126850	-	NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK294810|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_001006666|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_145298|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##BC128418|CBX7|23492|chromobox homolog 7##DQ064603|CBX7|23492|chromobox homolog 7##EU446785|CBX7|23492|chromobox homolog 7##BC051773|CBX7|23492|chromobox homolog 7##NM_175709|CBX7|23492|chromobox homolog 7##NM_033016|PDGFB|5155|platelet-derived growth factor beta polypeptide##X83705|PDGFB|5155|platelet-derived growth factor beta polypeptide	0.9962	0.0	denovo_WM_7:38:0.249	denovo_WM_7:39:0.249	denovo_WM_7:40:0.249	denovo_WM_7:41:0.249
chr6	11722520	11722696	reg1013737.p1	4.488	+	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-184110	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-340068	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	-489698	-	NM_001143948 NM_032744	56671	-	NM_002114	290115	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	567985	+	NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.0	0.010325	
chr16	66962824	66962927	reg1009372.p1	4.487	+	L24564 BC011645 AK290613 BC057815 NM_001128850 NM_004165	-3447	-	AF016272 AK225544 AK298255 AK225552 AK298334 AK313101 AK075243 AY358911 NM_001204744 NM_001204745 NM_001204746 NM_004062	-10068	-	TSC_hg19_v1_chr16_+_66914417 AK292539 NM_020786 AB037769 BC028030	-48431	+	TSC_hg19_v1_chr16_-_66968283 BC001733 BC005023 AF161467 AF151886 NM_016062	5426	-	TSC_hg19_v1_chr16_+_66968351 BX538086 NM_003869 NM_198061	5463	+	TSC_hg19_v1_chr16_+_66968360 BC032095	5486	+	L24564|RRAD|6236|Ras-related associated with diabetes##BC011645|RRAD|6236|Ras-related associated with diabetes##AK290613|RRAD|6236|Ras-related associated with diabetes##BC057815|RRAD|6236|Ras-related associated with diabetes##NM_001128850|RRAD|6236|Ras-related associated with diabetes##NM_004165|RRAD|6236|Ras-related associated with diabetes##AF016272|CDH16|1014|cadherin 16, KSP-cadherin##AK225544|CDH16|1014|cadherin 16, KSP-cadherin##AK298255|CDH16|1014|cadherin 16, KSP-cadherin##AK225552|CDH16|1014|cadherin 16, KSP-cadherin##AK298334|CDH16|1014|cadherin 16, KSP-cadherin##AK313101|CDH16|1014|cadherin 16, KSP-cadherin##AK075243|CDH16|1014|cadherin 16, KSP-cadherin##AY358911|CDH16|1014|cadherin 16, KSP-cadherin##NM_001204744|CDH16|1014|cadherin 16, KSP-cadherin##NM_001204745|CDH16|1014|cadherin 16, KSP-cadherin##NM_001204746|CDH16|1014|cadherin 16, KSP-cadherin##NM_004062|CDH16|1014|cadherin 16, KSP-cadherin##AK292539|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##NM_020786|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##AB037769|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##BC028030|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##BC001733|FAM96B|51647|family with sequence similarity 96, member B##BC005023|FAM96B|51647|family with sequence similarity 96, member B##AF161467|FAM96B|51647|family with sequence similarity 96, member B##AF151886|FAM96B|51647|family with sequence similarity 96, member B##NM_016062|FAM96B|51647|family with sequence similarity 96, member B##BX538086|CES2|8824|carboxylesterase 2##NM_003869|CES2|8824|carboxylesterase 2##NM_198061|CES2|8824|carboxylesterase 2##BC032095|CES2|8824|carboxylesterase 2	0.996876	0.07012	denovo_WM_7:38:0.985
chr17	37923548	37923682	reg1007506.p2	4.487	+	AK290115 NM_001242443	-27396	+	AK125544 NM_001242442	-28592	+	AK294620 NM_001030002 BC006535 TSC_hg19_v1_chr17_+_37894600	-29036	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	96815	-	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	100828	+	AF119884 NM_018530	150177	-	AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AK125544|GRB7|2886|growth factor receptor-bound protein 7##NM_001242442|GRB7|2886|growth factor receptor-bound protein 7##AK294620|GRB7|2886|growth factor receptor-bound protein 7##NM_001030002|GRB7|2886|growth factor receptor-bound protein 7##BC006535|GRB7|2886|growth factor receptor-bound protein 7##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B	0.0	0.0	
chr18	33790811	33790911	reg1012014.p2	4.487	+	TSC_hg19_v1_chr18_+_33767481 NM_017947 AK000740 BC012079 AK222886 DQ895841 EU176372	-23385	+	TSC_hg19_v1_chr18_+_33709886 AK300201 BC032553 AK222791 AK001741 BC007098 AB590856 CU689420 CR457269	-80973	+	NM_001242875 NM_001242876 NM_001242877 NM_001242878 NM_001242879 NM_018255 TSC_hg19_v1_chr18_+_33709861 AF403223 AK293051 AK302062	-81006	+	TSC_hg19_v1_chr18_+_33877676 AK128053 NM_025135 AB084087 HM191478	86853	+	TSC_hg19_v1_chr18_-_34408744 AB463512 BC022199 AK000543	617902	-	TSC_hg19_v1_chr18_-_34408937 AK295817 BC015178	618033	-	NM_017947|MOCOS|55034|molybdenum cofactor sulfurase##AK000740|MOCOS|55034|molybdenum cofactor sulfurase##BC012079|MOCOS|55034|molybdenum cofactor sulfurase##AK222886|MOCOS|55034|molybdenum cofactor sulfurase##DQ895841|MOCOS|55034|molybdenum cofactor sulfurase##EU176372|MOCOS|55034|molybdenum cofactor sulfurase##AK300201|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC032553|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK222791|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK001741|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC007098|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##CR457269|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##NM_001242875|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##NM_001242876|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##NM_001242877|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##NM_001242878|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##NM_001242879|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##NM_018255|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AF403223|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK293051|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK302062|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK128053|FHOD3|80206|formin homology 2 domain containing 3##NM_025135|FHOD3|80206|formin homology 2 domain containing 3##AB084087|FHOD3|80206|formin homology 2 domain containing 3##HM191478|FHOD3|80206|formin homology 2 domain containing 3##BC022199|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK000543|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK295817|TPGS2|25941|tubulin polyglutamylase complex subunit 2##BC015178|TPGS2|25941|tubulin polyglutamylase complex subunit 2	1.990266	0.0	denovo_WM_7:-23:0.269	denovo_WM_7:-24:0.726	denovo_WM_7:-39:0.859
chr19	2261946	2262043	reg1013125.p2	4.487	+	AK056978 NM_144616	-5576	-	NM_000479	-12882	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-25156	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	7526	+	TSC_hg19_v1_chr19_+_2269526 BC042364	7532	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	7548	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.047049	0.0	
chr19	51897402	51897520	reg1012450.p1	4.487	+	TSC_hg19_v1_chr19_-_51893838 BC085012 BC143997 BC043532 NM_001193623	-3636	-	BC074916 BC074917 BC126139 AF340019 BC069430 AF340020 NM_001161748 NM_030657	-6264	-	DQ895942 EU176419 BC015759 TSC_hg19_v1_chr19_-_51875909 NM_005601 S69115	-21582	-	TSC_hg19_v1_chr19_-_51920897 AK289900 AF310233 AY358337 AK290542 AK294185 AK303514 AK303717 BC101725 BC143497 BC143500 AF301007 AK292025 AK308982 AY032685 AF311905 NM_001171156 NM_001171157 NM_001171158 NM_001171159 NM_001171160 NM_001171161 NM_033130	23487	-	AF310234 AK290412 AF195092 AF223403 BC053319 AK290149 AK295589 NM_014442	64216	-	NM_001080405	82376	+	BC085012|LOC147646|147646|uncharacterized LOC147646##BC043532|LOC147646|147646|uncharacterized LOC147646##NM_001193623|LOC147646|147646|uncharacterized LOC147646##BC074916|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC074917|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC126139|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##AF340019|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##BC069430|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##AF340020|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##NM_001161748|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##NM_030657|LIM2|3982|lens intrinsic membrane protein 2, 19kDa##DQ895942|NKG7|4818|natural killer cell group 7 sequence##EU176419|NKG7|4818|natural killer cell group 7 sequence##BC015759|NKG7|4818|natural killer cell group 7 sequence##NM_005601|NKG7|4818|natural killer cell group 7 sequence##S69115|NKG7|4818|natural killer cell group 7 sequence##AK289900|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF310233|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AY358337|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK290542|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK294185|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK303514|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK303717|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC101725|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC143497|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##BC143500|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF301007|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK292025|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AK308982|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AY032685|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF311905|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171156|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171157|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171158|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171159|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171160|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_001171161|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##NM_033130|SIGLEC10|89790|sialic acid binding Ig-like lectin 10##AF310234|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AK290412|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AF195092|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AF223403|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##BC053319|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AK290149|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##AK295589|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##NM_014442|SIGLEC8|27181|sialic acid binding Ig-like lectin 8##NM_001080405|CEACAM18|729767|carcinoembryonic antigen-related cell adhesion molecule 18	0.0	0.0	
chr6	10685446	10685553	reg1012704.p1	4.487	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	-99485	+	NM_001491	-129551	+	AK307373 NM_145649 AK291767 AK310216 AL832714	-163891	+	BC016820 NM_001145020	9338	-	TSC_hg19_v1_chr6_+_10695204 BC010907 NM_017906 AB527917 DQ892798 DQ896045	9687	+	NM_001165258 NM_016462 TSC_hg19_v1_chr6_+_10723398 AF151028 BC010086 AK310191 AK309591 AF164962 BC002496 AK223462	37799	+	AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52##BC010907|PAK1IP1|55003|PAK1 interacting protein 1##NM_017906|PAK1IP1|55003|PAK1 interacting protein 1##DQ892798|PAK1IP1|55003|PAK1 interacting protein 1##DQ896045|PAK1IP1|55003|PAK1 interacting protein 1##NM_001165258|TMEM14C|51522|transmembrane protein 14C##NM_016462|TMEM14C|51522|transmembrane protein 14C##AF151028|TMEM14C|51522|transmembrane protein 14C##BC010086|TMEM14C|51522|transmembrane protein 14C##AK310191|TMEM14C|51522|transmembrane protein 14C##AK309591|TMEM14C|51522|transmembrane protein 14C##AF164962|TMEM14C|51522|transmembrane protein 14C##BC002496|TMEM14C|51522|transmembrane protein 14C##AK223462|TMEM14C|51522|transmembrane protein 14C	0.981687	0.0	denovo_WM_7:-9:0.415	denovo_WM_7:-10:0.415
chr6	21938914	21939055	reg1012640.p1	4.487	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-272325	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-344612	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1404261	+	BC015850 NM_000948	358745	-	X54394 X54393 GQ305133 M58594 NM_001163558	364063	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	630741	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	1.197935	0.0	denovo_WM_7:47:0.319	denovo_WM_7:-80:0.673
chr12	112204079	112204221	reg1011978.p1	4.486	+	AK092356 AK310923 AX747497 TSC_hg19_v1_chr12_+_112123871 AL832043 BC015056 AY323912 BC126358	-80244	+	TSC_hg19_v1_chr12_+_112123859 NM_001136538 NM_025247	-80296	+	TSC_hg19_v1_chr12_-_112123771 NM_006768	-80354	-	NM_000690 NM_001204889 TSC_hg19_v1_chr12_+_112204694	542	+	TSC_hg19_v1_chr12_+_112204765 AY621070 BC002967 X05409 AK223373 AK301375 Y00109 AK314856 BC071839 AB385105 CR456991 CU678320	598	+	TSC_hg19_v1_chr12_-_112279735 BC071748 BC007973 BC015633 BC032560 AK124158 BC107695	75582	-	AK092356|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AK310923|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AL832043|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC015056|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##AY323912|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##BC126358|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##NM_001136538|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##NM_025247|ACAD10|80724|acyl-CoA dehydrogenase family, member 10##NM_006768|BRAP|8315|BRCA1 associated protein##NM_000690|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##NM_001204889|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AY621070|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC002967|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##X05409|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK223373|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK301375|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##Y00109|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##AK314856|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC071839|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##CR456991|ALDH2|217|aldehyde dehydrogenase 2 family (mitochondrial)##BC007973|C12orf47|51275|chromosome 12 open reading frame 47##BC015633|C12orf47|51275|chromosome 12 open reading frame 47##BC032560|C12orf47|51275|chromosome 12 open reading frame 47	0.993416	0.0	
chr14	84000116	84000235	reg1012915.p2	4.486	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-1999948	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-2000027	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-2135349	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	1996298	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	1996366	+	TSC_hg19_v1_chr14_+_85999692 AK297248	1999410	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.0	0.0	
chr5	130659152	130659327	reg1014700.p2	4.486	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-59439	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-59471	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-59483	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	311518	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	311580	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	311639	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	1.211823	0.0	
chr8	141466580	141466747	reg1011197.p1	4.486	+	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	-751381	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	-1540419	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	-1957557	-	AB067469 TSC_hg19_v1_chr8_-_141467841	1162	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	1195	-	AK128755 NM_031466	2014	-	AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9	0.0	0.0	
chr9	136317107	136317216	reg1011858.p2	4.486	+	TSC_hg19_v1_chr9_+_136293730 AJ011374	-23421	+	AJ305314 AJ420810 AJ420811 BC103828 BC103829 BC103830 AY055376 TSC_hg19_v1_chr9_+_136287508 AF414401	-29684	+	AB069698 NM_139025 NM_139026 NM_139027 AK292439	-30029	+	NM_001135775 NM_001242369 NM_001242370 NM_017586 AK075416 TSC_hg19_v1_chr9_+_136325120 AK304524 AK074852 AK311325 AK296343 AK075548 BC030558 AJ011373 AY358452 AK298820 CU688906	7978	+	DQ891513 DQ894704 AK294974 BC013740 TSC_hg19_v1_chr9_-_136344222 AJ011372 AK225106 AK222919 AK074836 AK096630 Y17803 AK074927 NM_001145099 NM_017585	27067	-	NM_001080483	72906	-	AJ011374|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AJ305314|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AJ420810|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AJ420811|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##BC103828|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##BC103829|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##BC103830|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AY055376|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AF414401|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AB069698|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##NM_139025|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##NM_139026|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##NM_139027|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##AK292439|ADAMTS13|11093|ADAM metallopeptidase with thrombospondin type 1 motif, 13##NM_001135775|C9orf7|11094|chromosome 9 open reading frame 7##NM_001242369|C9orf7|11094|chromosome 9 open reading frame 7##NM_001242370|C9orf7|11094|chromosome 9 open reading frame 7##NM_017586|C9orf7|11094|chromosome 9 open reading frame 7##AK075416|C9orf7|11094|chromosome 9 open reading frame 7##AK304524|C9orf7|11094|chromosome 9 open reading frame 7##AK074852|C9orf7|11094|chromosome 9 open reading frame 7##AK311325|C9orf7|11094|chromosome 9 open reading frame 7##AK296343|C9orf7|11094|chromosome 9 open reading frame 7##AK075548|C9orf7|11094|chromosome 9 open reading frame 7##BC030558|C9orf7|11094|chromosome 9 open reading frame 7##AJ011373|C9orf7|11094|chromosome 9 open reading frame 7##AY358452|C9orf7|11094|chromosome 9 open reading frame 7##AK298820|C9orf7|11094|chromosome 9 open reading frame 7##DQ891513|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##DQ894704|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AK294974|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##BC013740|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AJ011372|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AK225106|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AK222919|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AK074836|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AK096630|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##Y17803|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##AK074927|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##NM_001145099|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##NM_017585|SLC2A6|11182|solute carrier family 2 (facilitated glucose transporter), member 6##NM_001080483|TMEM8C|389827|transmembrane protein 8C	1.907132	0.035236	denovo_WM_7:-40:0.369	denovo_WM_7:-41:0.581	denovo_WM_7:85:0.426	denovo_WM_7:87:0.365
chr1	234735357	234735497	reg1010645.p1	4.485	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	-120567	-	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	-226055	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-385421	+	TSC_hg19_v1_chr1_-_234743489 BC020516	8099	-	TSC_hg19_v1_chr1_-_234743841 AK299768	8404	-	TSC_hg19_v1_chr1_-_234743861 AK309579	8431	-	NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##BC037878|SLC35F3|148641|solute carrier family 35, member F3##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.999065	0.0	denovo_WM_7:3:0.314	denovo_WM_7:4:0.314	denovo_WM_7:5:0.314
chr15	59669081	59669208	reg1011367.p1	4.485	+	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	-4074	-	TSC_hg19_v1_chr15_-_59665065 AK291688	-4078	-	AB290177 TSC_hg19_v1_chr15_-_59665055	-4090	-	TSC_hg19_v1_chr15_+_59730403 BC022537 NM_152450 AK299220 AK307975	61206	+	TSC_hg19_v1_chr15_+_59903981 NM_004751 EF152283	234839	+	TSC_hg19_v1_chr15_+_59904093 BC017032	234962	+	BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##AB290177|MYO1E|4643|myosin IE##BC022537|FAM81A|145773|family with sequence similarity 81, member A##NM_152450|FAM81A|145773|family with sequence similarity 81, member A##AK299220|FAM81A|145773|family with sequence similarity 81, member A##AK307975|FAM81A|145773|family with sequence similarity 81, member A##NM_004751|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type##EF152283|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type##BC017032|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type	0.148171	0.013209	
chr16	69238938	69239079	reg1009927.p2	4.485	+	TSC_hg19_v1_chr16_+_69221066 BC031058 AF243385 NM_006750 U40572 BC048215 EU831451 EU831538	-17980	+	TSC_hg19_v1_chr16_+_69166551 AK027634 AK027675 AK310104 AB075868 BC009348	-72455	+	TSC_hg19_v1_chr16_+_69166532 BX647265 AK074795	-72481	+	TSC_hg19_v1_chr16_+_69345258 AK315026 AF132747 AF159063 AF255952 NM_013245 BC047932 AF112215 CU690536 EU831747	106324	+	TSC_hg19_v1_chr16_-_69364492 AF322879 BC019912 AF239156 NM_022341	125484	-	TSC_hg19_v1_chr16_-_69373468 BC063831	134429	-	BC031058|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AF243385|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##NM_006750|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##U40572|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##BC048215|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831451|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831538|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AK027634|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK027675|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK310104|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AB075868|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BC009348|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BX647265|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK074795|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK315026|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF132747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF159063|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF255952|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##NM_013245|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##BC047932|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF112215|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##EU831747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF322879|PDF|64146|peptide deformylase (mitochondrial)##BC019912|PDF|64146|peptide deformylase (mitochondrial)##AF239156|PDF|64146|peptide deformylase (mitochondrial)##NM_022341|PDF|64146|peptide deformylase (mitochondrial)##BC063831|COG8|84342|component of oligomeric golgi complex 8	0.995942	0.0	denovo_WM_7:60:0.815
chr18	3289319	3289487	reg1012272.p1	4.485	+	NM_001144944 NM_001144945	-26740	+	TSC_hg19_v1_chr18_+_3262184 BC004994	-27206	+	NM_033546 AY320408 TSC_hg19_v1_chr18_+_3262134 AK291726 U26162 D50372 D82058	-27258	+	NM_174886	122668	+	NM_173207 AK291112	158214	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	160677	+	NM_001144944|MYL12B|103910|myosin, light chain 12B, regulatory##NM_001144945|MYL12B|103910|myosin, light chain 12B, regulatory##BC004994|MYL12B|103910|myosin, light chain 12B, regulatory##NM_033546|MYL12B|103910|myosin, light chain 12B, regulatory##AY320408|MYL12B|103910|myosin, light chain 12B, regulatory##AK291726|MYL12B|103910|myosin, light chain 12B, regulatory##U26162|MYL12B|103910|myosin, light chain 12B, regulatory##D50372|MYL12B|103910|myosin, light chain 12B, regulatory##D82058|MYL12B|103910|myosin, light chain 12B, regulatory##NM_174886|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173207|TGIF1|7050|TGFB-induced factor homeobox 1##AK291112|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1	0.998819	0.0	
chr18	3593647	3593827	reg1000151.p1	4.485	+	NM_173211	-139966	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-142106	+	NM_173209 NM_173208 TSC_hg19_v1_chr18_+_3450174 NM_003244 AK309471 X89750	-143657	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	405	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	251593	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	280547	-	NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173209|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173208|TGIF1|7050|TGFB-induced factor homeobox 1##NM_003244|TGIF1|7050|TGFB-induced factor homeobox 1##AK309471|TGIF1|7050|TGFB-induced factor homeobox 1##X89750|TGIF1|7050|TGFB-induced factor homeobox 1##AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.0	0.0	
chr3	138600152	138600292	reg1010037.p1	4.485	+	AB384841 BC114432 NM_006219 S67334	-122038	-	AK001444 NM_018147	-272304	+	NM_001033030 NM_001033031 NM_001033032 TSC_hg19_v1_chr3_+_138327638 BC012478	-272606	+	BC062549 NM_023067	65759	-	AK125319 NM_001040061	65853	+	NM_001134659	124887	-	BC114432|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##NM_006219|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##S67334|PIK3CB|5291|phosphoinositide-3-kinase, catalytic, beta polypeptide##AK001444|FAIM|55179|Fas apoptotic inhibitory molecule##NM_018147|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033030|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033031|FAIM|55179|Fas apoptotic inhibitory molecule##NM_001033032|FAIM|55179|Fas apoptotic inhibitory molecule##BC012478|FAIM|55179|Fas apoptotic inhibitory molecule##BC062549|FOXL2|668|forkhead box L2##NM_023067|FOXL2|668|forkhead box L2##AK125319|C3orf72|401089|chromosome 3 open reading frame 72##NM_001040061|C3orf72|401089|chromosome 3 open reading frame 72##NM_001134659|PRR23A|729627|proline rich 23A	1.450747	0.0	denovo_WM_7:-88:0.453	denovo_WM_7:-91:0.298	denovo_WM_7:-106:0.249	denovo_WM_7:-107:0.404
chr5	118804050	118804198	reg1011945.p1	4.485	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	-15928	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	-112386	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	-112506	+	AF427126 AY692447 NM_001163991 NM_182761 BC040622 BC128242 BC128243	161192	+	BC011941 TSC_hg19_v1_chr5_-_119740564	936426	-	TSC_hg19_v1_chr5_+_119799994 BC092474	995824	+	NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF427126|FAM170A|340069|family with sequence similarity 170, member A##AY692447|FAM170A|340069|family with sequence similarity 170, member A##NM_001163991|FAM170A|340069|family with sequence similarity 170, member A##NM_182761|FAM170A|340069|family with sequence similarity 170, member A##BC040622|FAM170A|340069|family with sequence similarity 170, member A##BC128242|FAM170A|340069|family with sequence similarity 170, member A##BC128243|FAM170A|340069|family with sequence similarity 170, member A##BC092474|PRR16|51334|proline rich 16	0.998133	0.0	denovo_WM_7:-19:0.573
chr5	43041641	43041821	reg1009164.p1	4.485	+	AB463523 BC067873 AY032883 NM_001014279	-1435	-	TSC_hg19_v1_chr5_-_42993436 AK056817	-48285	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-229740	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	79270	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	79883	+	AK057343 NM_003432 TSC_hg19_v1_chr5_+_43121669 AK310735 BC017923	79953	+	BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131##AK057343|ZNF131|7690|zinc finger protein 131##NM_003432|ZNF131|7690|zinc finger protein 131##AK310735|ZNF131|7690|zinc finger protein 131##BC017923|ZNF131|7690|zinc finger protein 131	0.999385	0.0	denovo_WM_7:24:0.739
chr11	118659680	118659794	reg1011688.p1	4.484	+	AK223140 AK309565 AK091981 AK223143 AX747289 BC109206 NM_007180 AB000824	-109370	-	NM_001144758 NM_001144759 TSC_hg19_v1_chr11_+_118478332 CR749783 BC098586 AB014538 AK295819 AL832373 AK074070 AK125783	-181360	+	AB094090 NM_015157	-182525	+	BC065007 TSC_hg19_v1_chr11_-_118661679 AK313244	1896	-	TSC_hg19_v1_chr11_-_118661835 D17532	2099	-	BC039826 TSC_hg19_v1_chr11_-_118661855	2118	-	AK223140|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK309565|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK091981|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK223143|TREH|11181|trehalase (brush-border membrane glycoprotein)##BC109206|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_007180|TREH|11181|trehalase (brush-border membrane glycoprotein)##AB000824|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_001144758|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_001144759|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##CR749783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC098586|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB014538|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK295819|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AL832373|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK074070|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK125783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC065007|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK313244|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##D17532|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC039826|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.999494	0.0	
chr11	62980241	62980416	reg1013987.p1	4.484	+	BC034394 NM_001136506	-68636	-	AK307850 AK298341 AB042505 AK298351 AK313187 BC022387 NM_001184732 NM_001184733 NM_001184736 NM_004254	-197030	-	AK298374 AF057039 AF104038 AF124373 AB009698 AB009697 AK091879 BC033682 AK055764 NM_004790 NM_153276 NM_153277 NM_153278	-227896	-	AK127610 BC101315 BC101314 AY437532 BC101316 BC101317 NM_199352	16732	-	AK298430 AB075876 NM_001039752	77072	+	AK074246 BC022379 NM_080866 AB074812 AF440402 BC126288 AB062418 AJ295270 CU692590 HQ258285	157066	+	BC034394|SLC22A24|283238|solute carrier family 22, member 24##NM_001136506|SLC22A24|283238|solute carrier family 22, member 24##AK307850|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298341|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AB042505|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298351|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK313187|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##BC022387|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184732|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184733|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_001184736|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##NM_004254|SLC22A8|9376|solute carrier family 22 (organic anion transporter), member 8##AK298374|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF057039|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF104038|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AF124373|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AB009698|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AB009697|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK091879|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##BC033682|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK055764|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_004790|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153276|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153277|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##NM_153278|SLC22A6|9356|solute carrier family 22 (organic anion transporter), member 6##AK127610|SLC22A25|387601|solute carrier family 22, member 25##BC101315|SLC22A25|387601|solute carrier family 22, member 25##BC101314|SLC22A25|387601|solute carrier family 22, member 25##AY437532|SLC22A25|387601|solute carrier family 22, member 25##BC101316|SLC22A25|387601|solute carrier family 22, member 25##BC101317|SLC22A25|387601|solute carrier family 22, member 25##NM_199352|SLC22A25|387601|solute carrier family 22, member 25##AK298430|SLC22A10|387775|solute carrier family 22, member 10##AB075876|SLC22A10|387775|solute carrier family 22, member 10##NM_001039752|SLC22A10|387775|solute carrier family 22, member 10##AK074246|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##BC022379|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##NM_080866|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##AB074812|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##AF440402|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##BC126288|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##AB062418|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##AJ295270|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9##HQ258285|SLC22A9|114571|solute carrier family 22 (organic anion transporter), member 9	0.996157	0.460225	CTCF.p2:15:0.460	denovo_WM_7:-44:0.900
chr15	31621212	31621318	reg1007403.p2	4.484	+	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	-1927	+	NM_001243538	-98216	-	GQ502181 HM135791 NM_001252020	-167837	-	AJ430383 NM_130901	326276	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	541564	-	TSC_hg19_v1_chr15_-_32162898 AK126002	541678	-	AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##AK126002|OTUD7A|161725|OTU domain containing 7A	0.0	0.0	
chr8	59222522	59222689	reg1014911.p1	4.484	+	TSC_hg19_v1_chr8_+_58907119 AK092221 NM_147189	-315448	+	TSC_hg19_v1_chr8_-_57906427 AK000428 NM_017813	-1316179	-	BC067814 TSC_hg19_v1_chr8_-_57906402	-1316203	-	BC113645 NM_001077619 TSC_hg19_v1_chr8_+_59323919 AK126300 HQ258392 AL831990 AL833075 BX647876	101280	+	X56088 M93133 BC101777 BC112184 NM_000780	190102	-	NM_001007067 NM_001007068 NM_001007069 NM_001007070 NM_005625 TSC_hg19_v1_chr8_+_59465774 AF000652	243147	+	AK092221|FAM110B|90362|family with sequence similarity 110, member B##NM_147189|FAM110B|90362|family with sequence similarity 110, member B##AK000428|IMPAD1|54928|inositol monophosphatase domain containing 1##NM_017813|IMPAD1|54928|inositol monophosphatase domain containing 1##BC067814|IMPAD1|54928|inositol monophosphatase domain containing 1##BC113645|UBXN2B|137886|UBX domain protein 2B##NM_001077619|UBXN2B|137886|UBX domain protein 2B##AK126300|UBXN2B|137886|UBX domain protein 2B##HQ258392|UBXN2B|137886|UBX domain protein 2B##AL831990|UBXN2B|137886|UBX domain protein 2B##AL833075|UBXN2B|137886|UBX domain protein 2B##BX647876|UBXN2B|137886|UBX domain protein 2B##X56088|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##M93133|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC101777|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC112184|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_000780|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_001007067|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007068|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007069|SDCBP|6386|syndecan binding protein (syntenin)##NM_001007070|SDCBP|6386|syndecan binding protein (syntenin)##NM_005625|SDCBP|6386|syndecan binding protein (syntenin)##AF000652|SDCBP|6386|syndecan binding protein (syntenin)	0.0	0.0	
chr10	27658896	27659071	reg1013013.p2	4.483	+	TSC_hg19_v1_chr10_-_27531041 AK057469 AF505653 NM_001042473	-127901	-	TSC_hg19_v1_chr10_-_27531030 AB082527	-127968	-	TSC_hg19_v1_chr10_-_27529416 CU688904 AK295031 AK304842 BC025309 BC030555 BC011364 AK294510 NM_145698	-129439	-	JF332167 BC107139 AK126025 NM_001034842	44254	-	TSC_hg19_v1_chr10_+_27793232 AY574034 AK295443 AK297629 AK299457 BC029350 AF087860 BC015014 NM_021252 AL136734 AK223153 AB464117 AF137372 AF498950 AK001555 AM393142 BT009840 CR533455 CU677165	134246	+	BC036207 TSC_hg19_v1_chr10_-_28034752 AK125339 NM_001242702 NM_173576	375778	-	AK057469|ACBD5|91452|acyl-CoA binding domain containing 5##AF505653|ACBD5|91452|acyl-CoA binding domain containing 5##NM_001042473|ACBD5|91452|acyl-CoA binding domain containing 5##AB082527|ACBD5|91452|acyl-CoA binding domain containing 5##AK295031|ACBD5|91452|acyl-CoA binding domain containing 5##AK304842|ACBD5|91452|acyl-CoA binding domain containing 5##BC025309|ACBD5|91452|acyl-CoA binding domain containing 5##BC030555|ACBD5|91452|acyl-CoA binding domain containing 5##BC011364|ACBD5|91452|acyl-CoA binding domain containing 5##AK294510|ACBD5|91452|acyl-CoA binding domain containing 5##NM_145698|ACBD5|91452|acyl-CoA binding domain containing 5##JF332167|PTCHD3|374308|patched domain containing 3##BC107139|PTCHD3|374308|patched domain containing 3##AK126025|PTCHD3|374308|patched domain containing 3##NM_001034842|PTCHD3|374308|patched domain containing 3##AY574034|RAB18|22931|RAB18, member RAS oncogene family##AK295443|RAB18|22931|RAB18, member RAS oncogene family##AK297629|RAB18|22931|RAB18, member RAS oncogene family##AK299457|RAB18|22931|RAB18, member RAS oncogene family##BC029350|RAB18|22931|RAB18, member RAS oncogene family##AF087860|RAB18|22931|RAB18, member RAS oncogene family##BC015014|RAB18|22931|RAB18, member RAS oncogene family##NM_021252|RAB18|22931|RAB18, member RAS oncogene family##AL136734|RAB18|22931|RAB18, member RAS oncogene family##AK223153|RAB18|22931|RAB18, member RAS oncogene family##AF137372|RAB18|22931|RAB18, member RAS oncogene family##AF498950|RAB18|22931|RAB18, member RAS oncogene family##AK001555|RAB18|22931|RAB18, member RAS oncogene family##AM393142|RAB18|22931|RAB18, member RAS oncogene family##BT009840|RAB18|22931|RAB18, member RAS oncogene family##CR533455|RAB18|22931|RAB18, member RAS oncogene family##BC036207|MKX|283078|mohawk homeobox##AK125339|MKX|283078|mohawk homeobox##NM_001242702|MKX|283078|mohawk homeobox##NM_173576|MKX|283078|mohawk homeobox	0.108232	0.995522	CTCF.p2:-30:0.996
chr10	76555713	76555893	reg1014439.p1	4.483	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-619216	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-619273	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-619321	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	30551	+	AY686755 NM_001003892 BC137321 BC137322	262502	-	AB027004 AB103375 NM_016364	303444	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.553013	0.0	denovo_WM_7:-84:0.372
chr1	145230350	145230471	reg1013386.p2	4.483	+	TSC_hg19_v1_chr1_+_145209107 NM_203458 BC010154 AK075065 BC090943 BC019835 AK092351 AK098372 AX747492 BC065219 AK293876 BC084572	-21289	+	TSC_hg19_v1_chr1_+_145096519 CU674670 DQ892584 DQ895801	-133878	+	TSC_hg19_v1_chr1_+_145096446 NM_004892 AK289875 BC001364 AF047442	-133974	+	AY894562 AY894570 NM_001039703	62891	+	NM_145277 NM_202004 NM_213652 NM_213653 AK223575 AK092682 AK315852 AX747669 BC017926 AK096905 AK290831 AK292742 AK092692 AK124273 AX747673 BC085604	182853	+	TSC_hg19_v1_chr1_+_145438489 NM_006472 AK301203 BX537824 AK226090 S73591 BC093702 BC093704 AB527234 AY594328 BC024305 AK301148	208266	+	NM_203458|NOTCH2NL|388677|notch 2 N-terminal like##BC010154|NOTCH2NL|388677|notch 2 N-terminal like##AK075065|NOTCH2NL|388677|notch 2 N-terminal like##BC090943|NOTCH2NL|388677|notch 2 N-terminal like##BC019835|NOTCH2NL|388677|notch 2 N-terminal like##BC065219|NOTCH2NL|388677|notch 2 N-terminal like##BC084572|NOTCH2NL|388677|notch 2 N-terminal like##DQ892584|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##DQ895801|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##NM_004892|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##AK289875|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##BC001364|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##AF047442|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894570|NBPF8|728841|neuroblastoma breakpoint family, member 8##NM_001039703|NBPF10|100132406|neuroblastoma breakpoint family, member 10##NM_145277|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_202004|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213652|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213653|HFE2|148738|hemochromatosis type 2 (juvenile)##AK223575|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092682|HFE2|148738|hemochromatosis type 2 (juvenile)##AK315852|HFE2|148738|hemochromatosis type 2 (juvenile)##BC017926|HFE2|148738|hemochromatosis type 2 (juvenile)##AK096905|HFE2|148738|hemochromatosis type 2 (juvenile)##AK290831|HFE2|148738|hemochromatosis type 2 (juvenile)##AK292742|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092692|HFE2|148738|hemochromatosis type 2 (juvenile)##AK124273|HFE2|148738|hemochromatosis type 2 (juvenile)##BC085604|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_006472|TXNIP|10628|thioredoxin interacting protein##AK301203|TXNIP|10628|thioredoxin interacting protein##BX537824|TXNIP|10628|thioredoxin interacting protein##AK226090|TXNIP|10628|thioredoxin interacting protein##S73591|TXNIP|10628|thioredoxin interacting protein##BC093702|TXNIP|10628|thioredoxin interacting protein##BC093704|TXNIP|10628|thioredoxin interacting protein##AY594328|TXNIP|10628|thioredoxin interacting protein##BC024305|TXNIP|10628|thioredoxin interacting protein##AK301148|TXNIP|10628|thioredoxin interacting protein	2.96187	0.0	denovo_WM_7:-40:0.966	denovo_WM_7:-55:0.967	denovo_WM_7:-70:0.970
chr15	78814263	78814401	reg1011337.p2	4.483	+	TSC_hg19_v1_chr15_+_78799930 NM_001013619 NM_001083612 AK126453 BC132753 BC144383	-14405	+	TSC_hg19_v1_chr15_+_78730595 AB209403 BC017880 AK292992 BC117481 BC117483 BC143948 AB586699 HQ258663 M58511	-83709	+	TSC_hg19_v1_chr15_+_78730557 NM_004136	-83811	+	NM_001102667 NM_001102668 NM_002789 TSC_hg19_v1_chr15_+_78832785 BC005361 AK055714 AK315526	18433	+	TSC_hg19_v1_chr15_+_78832790 D28362 BC030529 AL110100 BC022445 BC093069 BC047667 D00763	18484	+	TSC_hg19_v1_chr15_+_78857888 NM_000745 BC033639 U62434 AF385586 M83712 CU689678 DQ893355 DQ896674 EU176798 Y08419	43612	+	NM_001013619|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##NM_001083612|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##AK126453|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC132753|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##BC144383|AGPHD1|123688|aminoglycoside phosphotransferase domain containing 1##AB209403|IREB2|3658|iron-responsive element binding protein 2##BC017880|IREB2|3658|iron-responsive element binding protein 2##AK292992|IREB2|3658|iron-responsive element binding protein 2##BC117481|IREB2|3658|iron-responsive element binding protein 2##BC117483|IREB2|3658|iron-responsive element binding protein 2##BC143948|IREB2|3658|iron-responsive element binding protein 2##HQ258663|IREB2|3658|iron-responsive element binding protein 2##M58511|IREB2|3658|iron-responsive element binding protein 2##NM_004136|IREB2|3658|iron-responsive element binding protein 2##NM_001102667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102668|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_002789|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC005361|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK055714|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK315526|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D28362|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC030529|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AL110100|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC022445|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC093069|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC047667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D00763|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_000745|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##BC033639|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##U62434|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##AF385586|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##M83712|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ893355|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ896674|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##EU176798|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##Y08419|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5	0.99239	0.0	denovo_WM_7:0:0.812
chr3	174115790	174115914	reg1012660.p2	4.483	+	BC032555 NM_014932	-999609	+	BC034496 AF345909 AF404758 AK093041 AX747878 NM_031955	-1256844	-	BC112086 AK023267 NM_018098 AB528037 DQ847274 TSC_hg19_v1_chr3_+_172472359	-1643550	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	42868	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	461238	+	TSC_hg19_v1_chr3_-_176914267 BX648935	2798398	-	BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BC034496|SPATA16|83893|spermatogenesis associated 16##AF345909|SPATA16|83893|spermatogenesis associated 16##AF404758|SPATA16|83893|spermatogenesis associated 16##AK093041|SPATA16|83893|spermatogenesis associated 16##NM_031955|SPATA16|83893|spermatogenesis associated 16##BC112086|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AK023267|ECT2|1894|epithelial cell transforming sequence 2 oncogene##NM_018098|ECT2|1894|epithelial cell transforming sequence 2 oncogene##DQ847274|ECT2|1894|epithelial cell transforming sequence 2 oncogene##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.994272	0.176427	denovo_WM_7:28:0.856
chr11	60401802	60401931	reg1012994.p1	4.482	+	AY324188 AY324189 AY324190 NM_001012417 NM_001100909 BC140799 BC171746	-118918	+	AK000224 AK309275 NM_001164470 NM_017716 BC029793	-141610	+	NM_021950 NM_152866 AK225630 AK292168 AK300025 AK310118 BC002807 X07203 X12530	-178553	+	AF237905 NM_031457 AK310969 AK310884 AK315901 BC022895 AK308413 AF350504 AK310872	65266	+	NM_001098835 NM_152717 AK300233 BC031610 AK091846 AX747218 AY584608 AY584609	122543	+	AK122633 NM_206893 BC137259 BC137263	150979	+	AY324188|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324189|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324190|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001012417|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001100909|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC140799|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC171746|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AK000224|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_001164470|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_017716|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##BC029793|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_021950|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##NM_152866|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK225630|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK292168|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK300025|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK310118|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##BC002807|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X07203|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X12530|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AF237905|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##NM_031457|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310969|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310884|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK315901|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##BC022895|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK308413|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AF350504|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310872|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##NM_001098835|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##NM_152717|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK300233|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##BC031610|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK091846|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AY584608|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AY584609|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK122633|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##NM_206893|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##BC137259|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##BC137263|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10	0.99317	0.253307	denovo_WM_7:9:0.826	CTCF.p2:-32:0.253
chr12	113635096	113635195	reg1000393.p2	4.482	+	AK075358 AK123762 AK027741 TSC_hg19_v1_chr12_+_113623525 AY007158 AK027733 NM_032848 AK222908	-11672	+	BC005848 BC001132 BC001848 AY148094 TSC_hg19_v1_chr12_-_113623279 AF478457 NM_001111322 NM_024072	-11898	-	AK308987 NM_001144872	-47541	+	TSC_hg19_v1_chr12_-_113658844 BC013151 NM_138451 AK127152	23717	-	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	24098	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	24135	+	AK075358|C12orf52|84934|chromosome 12 open reading frame 52##AK123762|C12orf52|84934|chromosome 12 open reading frame 52##AK027741|C12orf52|84934|chromosome 12 open reading frame 52##AY007158|C12orf52|84934|chromosome 12 open reading frame 52##AK027733|C12orf52|84934|chromosome 12 open reading frame 52##NM_032848|C12orf52|84934|chromosome 12 open reading frame 52##AK222908|C12orf52|84934|chromosome 12 open reading frame 52##BC005848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001132|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AY148094|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AF478457|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001111322|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_024072|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B##BC013151|IQCD|115811|IQ motif containing D##NM_138451|IQCD|115811|IQ motif containing D##AK127152|IQCD|115811|IQ motif containing D##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1	0.0	0.0	
chr16	87422274	87422424	reg1012023.p2	4.482	+	TSC_hg19_v1_chr16_-_87417364 AY736035 AF428140 BC012748 BC002985 NM_024735	-4987	-	TSC_hg19_v1_chr16_-_87350999 BC015536 AK026130 NM_001195124 NM_001195125	-71363	-	TSC_hg19_v1_chr16_-_87350760 AB528835 AM392822 AM393070	-71549	-	TSC_hg19_v1_chr16_+_87425387 BC041874	3045	+	TSC_hg19_v1_chr16_+_87425818 NM_022818	3460	+	TSC_hg19_v1_chr16_+_87425938 AK290956 BC048009 AK310224 AK310335 AF087871 AF183417	3560	+	AY736035|FBXO31|79791|F-box protein 31##AF428140|FBXO31|79791|F-box protein 31##BC012748|FBXO31|79791|F-box protein 31##BC002985|FBXO31|79791|F-box protein 31##NM_024735|FBXO31|79791|F-box protein 31##BC015536|C16orf95|100506581|chromosome 16 open reading frame 95##AK026130|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195124|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195125|C16orf95|100506581|chromosome 16 open reading frame 95##AM392822|C16orf95|100506581|chromosome 16 open reading frame 95##AM393070|C16orf95|100506581|chromosome 16 open reading frame 95##BC041874|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##NM_022818|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK290956|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC048009|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310224|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310335|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF087871|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF183417|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta	0.0	0.0	
chr3	140559296	140559390	reg1017467.p1	4.482	+	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	-162384	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-905091	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-905325	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	101424	+	TSC_hg19_v1_chr3_+_140770412 BC051354	211135	+	AF403029 BC008324 NM_080862 AK056367	211414	+	NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AF403029|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##BC008324|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##NM_080862|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4##AK056367|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.0	0.0	
chr5	138734951	138735131	reg1011778.p1	4.482	+	NM_001161546	-4157	-	GQ477350 DQ892627 EU176703 AK057549 AK292706 BC009931 BC021275 AF151024 NM_016459	-9467	-	TSC_hg19_v1_chr5_-_138719021 NM_005847 NM_152685	-16013	-	BC040037 BC050563 NM_194296 AK098740	4724	-	BC030162 TSC_hg19_v1_chr5_-_138775145 AK024054	40110	-	AK308138 TSC_hg19_v1_chr5_-_138775199	40153	-	NM_001161546|C5orf65|389333|chromosome 5 open reading frame 65##GQ477350|MZB1|51237|marginal zone B and B1 cell-specific protein##DQ892627|MZB1|51237|marginal zone B and B1 cell-specific protein##EU176703|MZB1|51237|marginal zone B and B1 cell-specific protein##AK057549|MZB1|51237|marginal zone B and B1 cell-specific protein##AK292706|MZB1|51237|marginal zone B and B1 cell-specific protein##BC009931|MZB1|51237|marginal zone B and B1 cell-specific protein##BC021275|MZB1|51237|marginal zone B and B1 cell-specific protein##AF151024|MZB1|51237|marginal zone B and B1 cell-specific protein##NM_016459|MZB1|51237|marginal zone B and B1 cell-specific protein##NM_005847|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##NM_152685|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##BC040037|SPATA24|202051|spermatogenesis associated 24##BC050563|SPATA24|202051|spermatogenesis associated 24##NM_194296|SPATA24|202051|spermatogenesis associated 24##AK098740|SPATA24|202051|spermatogenesis associated 24##BC030162|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18##AK308138|DNAJC18|202052|DnaJ (Hsp40) homolog, subfamily C, member 18	0.997023	0.0	denovo_WM_7:-25:0.313	denovo_WM_7:-26:0.313	denovo_WM_7:-27:0.313
chr5	72745532	72745693	reg1013029.p2	4.482	+	NM_004472 U59832 TSC_hg19_v1_chr5_-_72744463	-1203	-	U13222 TSC_hg19_v1_chr5_-_72743884	-1753	-	AK315460 NM_153217 AK055830	-276581	+	TSC_hg19_v1_chr5_+_72794266 NM_001037637 NM_001207 AK310919 AK225964 AK291125	48647	+	TSC_hg19_v1_chr5_+_72794276 BC061913 AB062126 BC008062 X74070 X53280 AB463433	48770	+	TSC_hg19_v1_chr5_-_72861256 AK022876	115620	-	NM_004472|FOXD1|2297|forkhead box D1##U59832|FOXD1|2297|forkhead box D1##U13222|FOXD1|2297|forkhead box D1##AK315460|TMEM174|134288|transmembrane protein 174##NM_153217|TMEM174|134288|transmembrane protein 174##AK055830|TMEM174|134288|transmembrane protein 174##NM_001037637|BTF3|689|basic transcription factor 3##NM_001207|BTF3|689|basic transcription factor 3##AK310919|BTF3|689|basic transcription factor 3##AK225964|BTF3|689|basic transcription factor 3##AK291125|BTF3|689|basic transcription factor 3##BC061913|BTF3|689|basic transcription factor 3##AB062126|BTF3|689|basic transcription factor 3##BC008062|BTF3|689|basic transcription factor 3##X74070|BTF3|689|basic transcription factor 3##X53280|BTF3|689|basic transcription factor 3##AK022876|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2	0.991524	0.0	denovo_WM_7:-34:0.248	denovo_WM_7:-35:0.248	denovo_WM_7:-36:0.248	denovo_WM_7:-37:0.248
chr11	120203696	120203857	reg1013537.p1	4.481	+	AK096207 AK304086 TSC_hg19_v1_chr11_+_120196007 AK289680 AK294713 BC015232	-7758	+	AK128040 NM_001198670 NM_001198671 NM_001198672 NM_001198673 NM_001198674 NM_001198675 NM_174926	-7939	+	AK291993 NM_014352 AF162278 BC101649 BC143593 BC143594 BC143595 AF133895 AJ012214 EU446698	-92799	+	TSC_hg19_v1_chr11_+_120207054 BX648515 AK304316	3328	+	BC063117 NM_001198665 NM_015313	3841	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	178689	+	AK096207|TMEM136|219902|transmembrane protein 136##AK304086|TMEM136|219902|transmembrane protein 136##AK289680|TMEM136|219902|transmembrane protein 136##AK294713|TMEM136|219902|transmembrane protein 136##BC015232|TMEM136|219902|transmembrane protein 136##AK128040|TMEM136|219902|transmembrane protein 136##NM_001198670|TMEM136|219902|transmembrane protein 136##NM_001198671|TMEM136|219902|transmembrane protein 136##NM_001198672|TMEM136|219902|transmembrane protein 136##NM_001198673|TMEM136|219902|transmembrane protein 136##NM_001198674|TMEM136|219902|transmembrane protein 136##NM_001198675|TMEM136|219902|transmembrane protein 136##NM_174926|TMEM136|219902|transmembrane protein 136##AK291993|POU2F3|25833|POU class 2 homeobox 3##NM_014352|POU2F3|25833|POU class 2 homeobox 3##AF162278|POU2F3|25833|POU class 2 homeobox 3##BC101649|POU2F3|25833|POU class 2 homeobox 3##BC143593|POU2F3|25833|POU class 2 homeobox 3##BC143594|POU2F3|25833|POU class 2 homeobox 3##BC143595|POU2F3|25833|POU class 2 homeobox 3##AF133895|POU2F3|25833|POU class 2 homeobox 3##AJ012214|POU2F3|25833|POU class 2 homeobox 3##EU446698|POU2F3|25833|POU class 2 homeobox 3##BX648515|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK304316|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##BC063117|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_001198665|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##NM_015313|ARHGEF12|23365|Rho guanine nucleotide exchange factor (GEF) 12##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4	1.125326	0.0	denovo_WM_7:-9:0.985
chr16	17548328	17548440	reg1013855.p1	4.481	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-1221854	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-1221896	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-1221902	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	16421	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1025007	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1249712	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.998572	0.0	denovo_WM_7:19:0.494	denovo_WM_7:20:0.494
chr19	54606095	54606182	reg1009368.p2	4.481	+	TSC_hg19_v1_chr19_-_54604114 AF391163 AF474153 DQ893697 DQ894733 AF391162 AK091111 AX746784 AK311307 AK130199 AF391164 AF474152 AF251702 NM_130771 NM_133168 NM_133169 NM_206818	-2019	-	DQ479398 NM_001135686	-21505	-	FN398145 FJ584316 FJ584317 FJ584318 FJ584319 FJ584320 FJ882051 DQ479397 BC100942 BC100943 AX721201 AY358542 NM_198481	-39018	-	TSC_hg19_v1_chr19_+_54606162 AF070653 BC061644 NM_004542 AK289489 BC011021 BC022369 AF044955 CR542143	28	+	NM_015629 DQ426885 AY040822 BC117389	12689	+	AK310647 AF052052 AK310627 NM_013342	12901	-	AF391163|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474153|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ893697|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ894733|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391162|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK091111|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK311307|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK130199|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391164|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474152|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF251702|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_130771|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133168|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133169|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_206818|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ479398|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##NM_001135686|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##FN398145|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584316|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584317|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584318|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584319|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584320|VSTM1|284415|V-set and transmembrane domain containing 1##FJ882051|VSTM1|284415|V-set and transmembrane domain containing 1##DQ479397|VSTM1|284415|V-set and transmembrane domain containing 1##BC100942|VSTM1|284415|V-set and transmembrane domain containing 1##BC100943|VSTM1|284415|V-set and transmembrane domain containing 1##AY358542|VSTM1|284415|V-set and transmembrane domain containing 1##NM_198481|VSTM1|284415|V-set and transmembrane domain containing 1##AF070653|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC061644|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##NM_004542|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AK289489|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC011021|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC022369|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AF044955|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##CR542143|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##NM_015629|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AY040822|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##BC117389|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK310647|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AF052052|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK310627|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_013342|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)	0.0	0.0	
chr2	50719756	50719870	reg1014605.p1	4.481	+	AF064842 NM_138735 TSC_hg19_v1_chr2_-_50574946	-144891	-	AY429104 BC096831 X68044 JN003607 BC118548 BC125270 M65085 S59900 M95489 AK292562 AK310367 NM_000145 NM_181446	-1338203	-	S57793 M63108 M73746 AK123498 NM_000233	-1736969	-	TSC_hg19_v1_chr2_-_51259258 BC046631	539445	-	EF539882 AK124726 NM_001135659 NM_004801	539791	-	BC019239 BC025376 NM_001008708 BC053896 BC017941 AK097260	3275143	+	AF064842|NRXN1|9378|neurexin 1##NM_138735|NRXN1|9378|neurexin 1##AY429104|FSHR|2492|follicle stimulating hormone receptor##BC096831|FSHR|2492|follicle stimulating hormone receptor##X68044|FSHR|2492|follicle stimulating hormone receptor##JN003607|FSHR|2492|follicle stimulating hormone receptor##BC118548|FSHR|2492|follicle stimulating hormone receptor##BC125270|FSHR|2492|follicle stimulating hormone receptor##M65085|FSHR|2492|follicle stimulating hormone receptor##S59900|FSHR|2492|follicle stimulating hormone receptor##M95489|FSHR|2492|follicle stimulating hormone receptor##AK292562|FSHR|2492|follicle stimulating hormone receptor##AK310367|FSHR|2492|follicle stimulating hormone receptor##NM_000145|FSHR|2492|follicle stimulating hormone receptor##NM_181446|FSHR|2492|follicle stimulating hormone receptor##S57793|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##M63108|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##M73746|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##AK123498|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##NM_000233|LHCGR|3973|luteinizing hormone/choriogonadotropin receptor##BC046631|NRXN1|9378|neurexin 1##EF539882|NRXN1|9378|neurexin 1##AK124726|NRXN1|9378|neurexin 1##NM_001135659|NRXN1|9378|neurexin 1##NM_004801|NRXN1|9378|neurexin 1##BC019239|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##BC025376|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##NM_001008708|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##BC053896|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##BC017941|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)	0.607538	0.903847	CTCF.p2:-7:0.904	denovo_WM_7:98:0.344
chr7	27929825	27929911	reg1003350.p1	4.481	+	TSC_hg19_v1_chr7_+_27779811 U33821 BC050358	-150049	+	BC001764 TSC_hg19_v1_chr7_+_27779809	-150059	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	-150093	+	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	290333	-	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	290538	-	L05913 NM_182899	409071	+	U33821|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC050358|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5	0.0	0.0	
chr11	107730439	107730619	reg1002804.p3	4.480	+	NM_017515	-616	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	-941	-	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	-1024	-	TSC_hg19_v1_chr11_+_107799171 AK292969 BC028064 NM_017516 X99962	68706	+	NM_003478 AK125294	148903	+	TSC_hg19_v1_chr11_+_107879644 AK292575 BC063306	149098	+	NM_017515|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK292969|RAB39A|54734|RAB39A, member RAS oncogene family##BC028064|RAB39A|54734|RAB39A, member RAS oncogene family##NM_017516|RAB39A|54734|RAB39A, member RAS oncogene family##X99962|RAB39A|54734|RAB39A, member RAS oncogene family##NM_003478|CUL5|8065|cullin 5##AK125294|CUL5|8065|cullin 5##AK292575|CUL5|8065|cullin 5##BC063306|CUL5|8065|cullin 5	0.0	0.0	
chr15	55569432	55569540	reg1010071.p1	4.480	+	BC132800 BC136423 BC107680 NM_183236	-6388	-	AF125393 NM_183234 U57094 U38654 NM_004580	-6949	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	-80307	-	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	12505	-	NM_004855 AK293666 AK314706 BC017711	41677	+	TSC_hg19_v1_chr15_-_55611322 AB593170	41854	-	BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004855|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK293666|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK314706|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##BC017711|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B	0.0	0.0	
chr16	57048793	57048881	reg1007383.p2	4.480	+	TSC_hg19_v1_chr16_+_57023474 AK097030	-25377	+	M30185 AK297699 NM_000078 TSC_hg19_v1_chr16_+_56995861 AK291586 BC025739 EU176529 CU693046 BT020064 M83573	-53000	+	AK302167 TSC_hg19_v1_chr16_+_56966053 AB034989 AK223233 AK291565 AK292088 AK304800 BC009739 DQ837586 AF055001 D14695 BC000086 BC008320 BC032673 DQ891867 EU176642 CR457116 AF055003	-82696	+	AK074182 NM_032206	2148	+	AF389420 EF452236 TSC_hg19_v1_chr16_+_57054697	5823	+	TSC_hg19_v1_chr16_+_57126462 NM_152727	77628	+	AK097030|NLRC5|84166|NLR family, CARD domain containing 5##M30185|CETP|1071|cholesteryl ester transfer protein, plasma##AK297699|CETP|1071|cholesteryl ester transfer protein, plasma##NM_000078|CETP|1071|cholesteryl ester transfer protein, plasma##AK291586|CETP|1071|cholesteryl ester transfer protein, plasma##BC025739|CETP|1071|cholesteryl ester transfer protein, plasma##EU176529|CETP|1071|cholesteryl ester transfer protein, plasma##BT020064|CETP|1071|cholesteryl ester transfer protein, plasma##M83573|CETP|1071|cholesteryl ester transfer protein, plasma##AK302167|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AB034989|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK223233|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK291565|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK292088|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK304800|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC009739|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ837586|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055001|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##D14695|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC000086|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC008320|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC032673|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ891867|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##EU176642|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##CR457116|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055003|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK074182|NLRC5|84166|NLR family, CARD domain containing 5##NM_032206|NLRC5|84166|NLR family, CARD domain containing 5##AF389420|NLRC5|84166|NLR family, CARD domain containing 5##EF452236|NLRC5|84166|NLR family, CARD domain containing 5##NM_152727|CPNE2|221184|copine II	0.990315	0.0	denovo_WM_7:10:0.899
chr16	68772934	68773008	reg1003552.p2	4.480	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-1660	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-1726	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-1752	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	104534	+	AK291400 NM_001199280	366495	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	367169	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	0.0	0.0	
chr16	8688125	8688255	reg1014056.p2	4.480	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	-1305440	+	AK001027 NM_001142334	-1864381	+	TSC_hg19_v1_chr16_+_6533765 BC033885	-2154415	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	27350	+	TSC_hg19_v1_chr16_+_8768473 NM_020686 BX537362 AK096146 BC031413 BC015628	80272	+	NM_000663 TSC_hg19_v1_chr16_+_8806841 BC013965	118645	+	AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22##NM_020686|ABAT|18|4-aminobutyrate aminotransferase##BX537362|ABAT|18|4-aminobutyrate aminotransferase##AK096146|ABAT|18|4-aminobutyrate aminotransferase##BC031413|ABAT|18|4-aminobutyrate aminotransferase##BC015628|ABAT|18|4-aminobutyrate aminotransferase##NM_000663|ABAT|18|4-aminobutyrate aminotransferase##BC013965|ABAT|18|4-aminobutyrate aminotransferase	0.0	0.0	
chr18	43245248	43245428	reg1011064.p1	4.480	+	AF349446 NM_007163	-50573	+	NM_001242692 AK292422	-452386	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-984470	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	58766	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	58819	+	NM_001146037	61579	+	AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	0.0	0.511997	CTCF.p2:-74:0.512
chr2	233974656	233974773	reg1014162.p1	4.480	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-49598	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-49655	+	BC069151 BC107053 NM_005383	-77333	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	185552	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	185609	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	185643	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	0.993792	0.0	denovo_WM_7:54:0.248	denovo_WM_7:55:0.248	denovo_WM_7:56:0.248	denovo_WM_7:57:0.248
chr6	52150144	52150261	reg1009948.p2	4.480	+	TSC_hg19_v1_chr6_-_52149551 D38073 AK299566 NM_002388 AK301704	-623	-	AK222586 TSC_hg19_v1_chr6_-_52149520 BC001626 BC003509	-682	-	AB528319 DQ893654 DQ895840 TSC_hg19_v1_chr6_-_52149506 AK312928 AK300754 X62153 AY032603	-711	-	TSC_hg19_v1_chr6_+_52226960 NM_133367 AF347029 AK315088 BC030664	76755	+	TSC_hg19_v1_chr6_+_52285086 NM_018100 AK225543 AL122084 AK001328 EU520261 BC020210 AK295064 BC012921 DQ892170 DQ895364 CU676508	134876	+	AK297632 NM_001172420	135602	+	D38073|MCM3|4172|minichromosome maintenance complex component 3##AK299566|MCM3|4172|minichromosome maintenance complex component 3##NM_002388|MCM3|4172|minichromosome maintenance complex component 3##AK301704|MCM3|4172|minichromosome maintenance complex component 3##AK222586|MCM3|4172|minichromosome maintenance complex component 3##BC001626|MCM3|4172|minichromosome maintenance complex component 3##BC003509|MCM3|4172|minichromosome maintenance complex component 3##DQ893654|MCM3|4172|minichromosome maintenance complex component 3##DQ895840|MCM3|4172|minichromosome maintenance complex component 3##AK312928|MCM3|4172|minichromosome maintenance complex component 3##AK300754|MCM3|4172|minichromosome maintenance complex component 3##X62153|MCM3|4172|minichromosome maintenance complex component 3##AY032603|MCM3|4172|minichromosome maintenance complex component 3##NM_133367|PAQR8|85315|progestin and adipoQ receptor family member VIII##AF347029|PAQR8|85315|progestin and adipoQ receptor family member VIII##AK315088|PAQR8|85315|progestin and adipoQ receptor family member VIII##BC030664|PAQR8|85315|progestin and adipoQ receptor family member VIII##NM_018100|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK225543|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AL122084|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK001328|EFHC1|114327|EF-hand domain (C-terminal) containing 1##EU520261|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC020210|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK295064|EFHC1|114327|EF-hand domain (C-terminal) containing 1##BC012921|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ892170|EFHC1|114327|EF-hand domain (C-terminal) containing 1##DQ895364|EFHC1|114327|EF-hand domain (C-terminal) containing 1##AK297632|EFHC1|114327|EF-hand domain (C-terminal) containing 1##NM_001172420|EFHC1|114327|EF-hand domain (C-terminal) containing 1	0.186476	0.056225	
chr9	5004929	5005109	reg1007497.p1	4.480	+	TSC_hg19_v1_chr9_+_4985271 AF005216 NM_004972 AF058925	-19760	+	TSC_hg19_v1_chr9_+_4985085 AK292525	-19932	+	TSC_hg19_v1_chr9_+_4839769 EF553527	-165251	+	AF135824 HQ258002 AF156094 NM_007179 BC126473 BC126475	180594	-	BC026254 AK291543 L34838 NM_002195 CU693182	226443	+	HQ258745 NM_005059 NM_134441 X00948 BC126415 BC126419	299575	-	AF005216|JAK2|3717|Janus kinase 2##NM_004972|JAK2|3717|Janus kinase 2##AF058925|JAK2|3717|Janus kinase 2##AK292525|JAK2|3717|Janus kinase 2##EF553527|RCL1|10171|RNA terminal phosphate cyclase-like 1##AF135824|INSL6|11172|insulin-like 6##HQ258002|INSL6|11172|insulin-like 6##AF156094|INSL6|11172|insulin-like 6##NM_007179|INSL6|11172|insulin-like 6##BC126473|INSL6|11172|insulin-like 6##BC126475|INSL6|11172|insulin-like 6##BC026254|INSL4|3641|insulin-like 4 (placenta)##AK291543|INSL4|3641|insulin-like 4 (placenta)##L34838|INSL4|3641|insulin-like 4 (placenta)##NM_002195|INSL4|3641|insulin-like 4 (placenta)##HQ258745|RLN2|6019|relaxin 2##NM_005059|RLN2|6019|relaxin 2##NM_134441|RLN2|6019|relaxin 2##X00948|RLN2|6019|relaxin 2##BC126415|RLN2|6019|relaxin 2##BC126419|RLN2|6019|relaxin 2	3.989593	0.0	denovo_WM_7:72:0.410	denovo_WM_7:73:0.278	denovo_WM_7:88:0.216	denovo_WM_7:89:0.245	denovo_WM_7:90:0.224	denovo_WM_7:-91:0.449	denovo_WM_7:-92:0.449
chr2	201578072	201578252	reg1007585.p2	4.479	+	AK297930 AK307738 TSC_hg19_v1_chr2_+_201474048	-104165	+	AB046692 NM_001159 TSC_hg19_v1_chr2_+_201450748 BC117179 BC117181	-127378	+	TSC_hg19_v1_chr2_+_201450590 AK301052	-127575	+	TSC_hg19_v1_chr2_+_201676291 NM_001207067 NM_014670 AL833518	98124	+	TSC_hg19_v1_chr2_+_201676632 Z70221 AK096489	98452	+	D13630 TSC_hg19_v1_chr2_+_201676645 BC001804	98484	+	AK297930|AOX1|316|aldehyde oxidase 1##AK307738|AOX1|316|aldehyde oxidase 1##AB046692|AOX1|316|aldehyde oxidase 1##NM_001159|AOX1|316|aldehyde oxidase 1##BC117179|AOX1|316|aldehyde oxidase 1##BC117181|AOX1|316|aldehyde oxidase 1##AK301052|AOX1|316|aldehyde oxidase 1##NM_001207067|BZW1|9689|basic leucine zipper and W2 domains 1##NM_014670|BZW1|9689|basic leucine zipper and W2 domains 1##AL833518|BZW1|9689|basic leucine zipper and W2 domains 1##Z70221|BZW1|9689|basic leucine zipper and W2 domains 1##AK096489|BZW1|9689|basic leucine zipper and W2 domains 1##D13630|BZW1|9689|basic leucine zipper and W2 domains 1##BC001804|BZW1|9689|basic leucine zipper and W2 domains 1	0.998132	0.0	denovo_WM_7:55:0.409	denovo_WM_7:56:0.409
chr3	196412105	196412277	reg1011083.p2	4.479	+	BC044233 NM_198565 TSC_hg19_v1_chr3_+_196366658 AY358322	-45529	+	TSC_hg19_v1_chr3_+_196366647 BC034704	-45546	+	TSC_hg19_v1_chr3_+_196295733 NM_001105573	-116459	+	AK058155 TSC_hg19_v1_chr3_-_196439156 BC007827 AY099509 NM_032898 AK314070	26925	-	TSC_hg19_v1_chr3_+_196439214 NM_001166304 NM_017861 AK000529 BC022542	27068	+	TSC_hg19_v1_chr3_+_196466727 NM_002577	54534	+	BC044233|LRRC33|375387|leucine rich repeat containing 33##NM_198565|LRRC33|375387|leucine rich repeat containing 33##AY358322|LRRC33|375387|leucine rich repeat containing 33##BC034704|LRRC33|375387|leucine rich repeat containing 33##NM_001105573|FBXO45|200933|F-box protein 45##AK058155|CEP19|84984|centrosomal protein 19kDa##BC007827|CEP19|84984|centrosomal protein 19kDa##AY099509|CEP19|84984|centrosomal protein 19kDa##NM_032898|CEP19|84984|centrosomal protein 19kDa##AK314070|CEP19|84984|centrosomal protein 19kDa##NM_001166304|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_017861|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##AK000529|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##BC022542|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_002577|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2	0.999044	0.01292	denovo_WM_7:59:0.974
chr5	106724060	106724225	reg1014018.p1	4.479	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3825661	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4129685	+	BC024591 NM_015216 AB463068	-4258868	+	AK308672 NM_001962 U26403	282448	-	TSC_hg19_v1_chr5_-_107717106 AK126722	992988	-	BC063316 NM_001163315	993656	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.446289	0.0	denovo_WM_7:-2:0.406
chr6	11825144	11825292	reg1008265.p1	4.479	+	NM_001143948 NM_032744	-45939	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-286720	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-442678	-	NM_002114	187505	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	465375	+	TSC_hg19_v1_chr6_+_12514301 D28417	689084	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.034947	0.0	
chr10	126516377	126516552	reg1001618.p2	4.478	+	NM_032182 TSC_hg19_v1_chr10_+_126490387 AK296677 D63877 BC008999	-26092	+	TSC_hg19_v1_chr10_-_126480455 CU693146 AL832292 AF318345 BC026167 NM_212554	-36060	-	TSC_hg19_v1_chr10_-_126432908 NM_014661	-83553	-	NM_017580	114227	+	AF222711 NM_022802	199988	-	TSC_hg19_v1_chr10_-_126849010 AF016507 BC072020	332562	-	NM_032182|FAM175B|23172|family with sequence similarity 175, member B##AK296677|FAM175B|23172|family with sequence similarity 175, member B##D63877|FAM175B|23172|family with sequence similarity 175, member B##BC008999|FAM175B|23172|family with sequence similarity 175, member B##AL832292|METTL10|399818|methyltransferase like 10##AF318345|METTL10|399818|methyltransferase like 10##BC026167|METTL10|399818|methyltransferase like 10##NM_212554|METTL10|399818|methyltransferase like 10##NM_014661|FAM53B|9679|family with sequence similarity 53, member B##NM_017580|ZRANB1|54764|zinc finger, RAN-binding domain containing 1##AF222711|CTBP2|1488|C-terminal binding protein 2##NM_022802|CTBP2|1488|C-terminal binding protein 2##AF016507|CTBP2|1488|C-terminal binding protein 2##BC072020|CTBP2|1488|C-terminal binding protein 2	0.0	0.0	
chr10	6337529	6337595	reg1013628.p1	4.478	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-92686	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-150650	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-150678	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	284699	-	TSC_hg19_v1_chr10_+_6622460 AY007155	284918	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1113688	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.0	
chr18	8603781	8603907	reg1009091.p1	4.478	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-656938	+	NM_001105244 NM_002845 TSC_hg19_v1_chr18_+_7567321	-1036527	+	NM_001105581	-1372708	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	5592	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	5902	+	AK131528 NM_015210	113524	+	AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_001105244|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_002845|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_001105581|LRRC30|339291|leucine rich repeat containing 30##BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165	0.02078	0.0	
chr3	44040274	44040368	reg1012341.p1	4.478	+	TSC_hg19_v1_chr3_+_43732466 NM_016006 BC021958 AK313811 AF151816 CU692422 DQ891175 DQ894357	-307900	+	TSC_hg19_v1_chr3_-_43663467 AK131223 AK295969 AK297949 AK096302 NM_001204831 NM_001204832 NM_001204833 NM_001204834 NM_018075	-376808	-	TSC_hg19_v1_chr3_-_43663446 AL832508 AK292368 BC038855	-376883	-	AK093476 AX748152 NM_001145030	243056	+	TSC_hg19_v1_chr3_+_44379620 AK292756 NM_001029840 BC009400	339309	+	TSC_hg19_v1_chr3_+_44379944 AK056593 NM_001029839 NM_173826 BC062587	339626	+	NM_016006|ABHD5|51099|abhydrolase domain containing 5##BC021958|ABHD5|51099|abhydrolase domain containing 5##AK313811|ABHD5|51099|abhydrolase domain containing 5##AF151816|ABHD5|51099|abhydrolase domain containing 5##DQ891175|ABHD5|51099|abhydrolase domain containing 5##DQ894357|ABHD5|51099|abhydrolase domain containing 5##AK131223|ANO10|55129|anoctamin 10##AK295969|ANO10|55129|anoctamin 10##AK297949|ANO10|55129|anoctamin 10##AK096302|ANO10|55129|anoctamin 10##NM_001204831|ANO10|55129|anoctamin 10##NM_001204832|ANO10|55129|anoctamin 10##NM_001204833|ANO10|55129|anoctamin 10##NM_001204834|ANO10|55129|anoctamin 10##NM_018075|ANO10|55129|anoctamin 10##AL832508|ANO10|55129|anoctamin 10##AK292368|ANO10|55129|anoctamin 10##BC038855|ANO10|55129|anoctamin 10##AK093476|C3orf77|375337|chromosome 3 open reading frame 77##NM_001145030|C3orf77|375337|chromosome 3 open reading frame 77##AK292756|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029840|C3orf23|285343|chromosome 3 open reading frame 23##BC009400|C3orf23|285343|chromosome 3 open reading frame 23##AK056593|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029839|C3orf23|285343|chromosome 3 open reading frame 23##NM_173826|C3orf23|285343|chromosome 3 open reading frame 23##BC062587|C3orf23|285343|chromosome 3 open reading frame 23	0.9773	0.0	denovo_WM_7:-40:0.844
chr8	55065660	55065764	reg1012305.p2	4.478	+	BC000891 NM_014175 TSC_hg19_v1_chr8_+_55047820 AF161494 AL136665 AK312832 AB528184 AM392964 CR533531	-17901	+	TSC_hg19_v1_chr8_-_55014465 CR457103 CU679013 DQ891527 DQ894717 BC010397 AF077198 AF077199 AF291053 AK307277 AK313739 AF081281 AK298206 AK289400 BC008652 AF052112 NM_006330	-51214	-	TSC_hg19_v1_chr8_-_54934990 NM_006756 NM_201437	-130693	-	AK025905 NM_022454 TSC_hg19_v1_chr8_+_55370494 BC030209 BC111770 BC111365	304804	+	AF141021 NM_006269 DQ980612 DQ980613 DQ980614 AF143222 AF146592 DQ980615	462940	+	BC106028 AY534241 NM_052898	949302	+	BC000891|MRPL15|29088|mitochondrial ribosomal protein L15##NM_014175|MRPL15|29088|mitochondrial ribosomal protein L15##AF161494|MRPL15|29088|mitochondrial ribosomal protein L15##AL136665|MRPL15|29088|mitochondrial ribosomal protein L15##AK312832|MRPL15|29088|mitochondrial ribosomal protein L15##AM392964|MRPL15|29088|mitochondrial ribosomal protein L15##CR533531|MRPL15|29088|mitochondrial ribosomal protein L15##CR457103|LYPLA1|10434|lysophospholipase I##DQ891527|LYPLA1|10434|lysophospholipase I##DQ894717|LYPLA1|10434|lysophospholipase I##BC010397|LYPLA1|10434|lysophospholipase I##AF077198|LYPLA1|10434|lysophospholipase I##AF077199|LYPLA1|10434|lysophospholipase I##AF291053|LYPLA1|10434|lysophospholipase I##AK307277|LYPLA1|10434|lysophospholipase I##AK313739|LYPLA1|10434|lysophospholipase I##AF081281|LYPLA1|10434|lysophospholipase I##AK298206|LYPLA1|10434|lysophospholipase I##AK289400|LYPLA1|10434|lysophospholipase I##BC008652|LYPLA1|10434|lysophospholipase I##AF052112|LYPLA1|10434|lysophospholipase I##NM_006330|LYPLA1|10434|lysophospholipase I##NM_006756|TCEA1|6917|transcription elongation factor A (SII), 1##NM_201437|TCEA1|6917|transcription elongation factor A (SII), 1##AK025905|SOX17|64321|SRY (sex determining region Y)-box 17##NM_022454|SOX17|64321|SRY (sex determining region Y)-box 17##BC030209|SOX17|64321|SRY (sex determining region Y)-box 17##BC111770|SOX17|64321|SRY (sex determining region Y)-box 17##BC111365|SOX17|64321|SRY (sex determining region Y)-box 17##AF141021|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##NM_006269|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980612|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980613|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980614|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF143222|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF146592|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980615|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AY534241|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4##NM_052898|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4	0.0	0.0	
chr9	100265567	100265728	reg1014155.p1	4.478	+	TSC_hg19_v1_chr9_+_100263947 BC002660 NM_003275	-1709	+	NM_001166116 AK314533	-2185	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	-91268	+	TSC_hg19_v1_chr9_-_100395642 AK094043 AK291199 AX748426 BC035604 BX648493 BX538308 AK128615	129982	-	NM_002486 AK312807 TSC_hg19_v1_chr9_+_100395897 D32002	130179	+	NM_139246	130314	-	BC002660|TMOD1|7111|tropomodulin 1##NM_003275|TMOD1|7111|tropomodulin 1##NM_001166116|TMOD1|7111|tropomodulin 1##AK314533|TMOD1|7111|tropomodulin 1##AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7##AK094043|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK291199|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BC035604|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX648493|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX538308|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK128615|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##NM_002486|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##AK312807|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##D32002|NCBP1|4686|nuclear cap binding protein subunit 1, 80kDa##NM_139246|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	0.0	0.0	
chr16	71929295	71929414	reg1005841.p2	4.477	+	TSC_hg19_v1_chr16_-_71918084 BC012116 AK313693 BC004563 NM_001201552 NM_001201554 NM_001201556	-11310	-	AF070588 AK296603 NM_001201553 NM_017530	-11927	-	TSC_hg19_v1_chr16_+_71879908 NM_001137675	-49433	+	TSC_hg19_v1_chr16_+_71929421 AK291388 AK297336 BC103745	60	+	TSC_hg19_v1_chr16_+_71929438 AK295066 AK301918 AK057902 AK293022 AK297088 AB097052 D79996 BC000430 BC004359 NM_014761 BC000116	89	+	AY164485 NM_181536	104522	-	BC012116|ZNF821|55565|zinc finger protein 821##AK313693|ZNF821|55565|zinc finger protein 821##BC004563|ZNF821|55565|zinc finger protein 821##NM_001201552|ZNF821|55565|zinc finger protein 821##NM_001201554|ZNF821|55565|zinc finger protein 821##NM_001201556|ZNF821|55565|zinc finger protein 821##AF070588|ZNF821|55565|zinc finger protein 821##AK296603|ZNF821|55565|zinc finger protein 821##NM_001201553|ZNF821|55565|zinc finger protein 821##NM_017530|ZNF821|55565|zinc finger protein 821##NM_001137675|ATXN1L|342371|ataxin 1-like##AK291388|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297336|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC103745|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK295066|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK301918|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK057902|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK293022|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297088|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AB097052|IST1|9798|increased sodium tolerance 1 homolog (yeast)##D79996|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000430|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC004359|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_014761|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000116|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AY164485|PKD1L3|342372|polycystic kidney disease 1-like 3##NM_181536|PKD1L3|342372|polycystic kidney disease 1-like 3	0.0	0.0	
chr17	57824315	57824439	reg1009885.p1	4.477	+	TSC_hg19_v1_chr17_+_57785080 AK293664	-39304	+	AK294854 TSC_hg19_v1_chr17_+_57785025 AF214006 AX775965	-39342	+	BC009758 TSC_hg19_v1_chr17_+_57785014 AK024969	-39361	+	TSC_hg19_v1_chr17_+_57915291 AK310806	90929	+	AK024096 AK298492 AK301312 BC000258 AK022771 AK315172 NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261	145814	-	NM_003161 BC036033 TSC_hg19_v1_chr17_+_57970481 AK293247	146085	+	AK293664|VMP1|81671|vacuole membrane protein 1##AK294854|VMP1|81671|vacuole membrane protein 1##AF214006|VMP1|81671|vacuole membrane protein 1##AX775965|VMP1|81671|vacuole membrane protein 1##BC009758|VMP1|81671|vacuole membrane protein 1##AK024969|VMP1|81671|vacuole membrane protein 1##AK024096|TUBD1|51174|tubulin, delta 1##AK298492|TUBD1|51174|tubulin, delta 1##AK301312|TUBD1|51174|tubulin, delta 1##BC000258|TUBD1|51174|tubulin, delta 1##AK022771|TUBD1|51174|tubulin, delta 1##AK315172|TUBD1|51174|tubulin, delta 1##NM_001193609|TUBD1|51174|tubulin, delta 1##NM_001193610|TUBD1|51174|tubulin, delta 1##NM_001193611|TUBD1|51174|tubulin, delta 1##NM_001193612|TUBD1|51174|tubulin, delta 1##NM_001193613|TUBD1|51174|tubulin, delta 1##NM_016261|TUBD1|51174|tubulin, delta 1##NM_003161|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##BC036033|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1##AK293247|RPS6KB1|6198|ribosomal protein S6 kinase, 70kDa, polypeptide 1	0.0	0.963435	CTCF.p2:14:0.963
chr19	53039023	53039134	reg1007904.p1	4.477	+	CR749856 TSC_hg19_v1_chr19_+_53030941 NM_001039886	-8149	+	AB091373 AB091374 AK299106 NM_001099694 TSC_hg19_v1_chr19_+_52956836 AL833487 AB091376 AB091375	-82251	+	AB086839 AB086840 AB091368 AB091369 NM_001143938 NM_001143939	-104412	+	TSC_hg19_v1_chr19_+_53073539 NM_018260 AK001753 BC131719 BC136425 BC136426 BC054884 BC080612	34464	+	BC067346 NM_001172655	34838	+	TSC_hg19_v1_chr19_-_53141603 BC032867 AK027518 NM_001105549 NM_001105550 NM_001105551 NM_001105552 NM_001105553 NM_001105554 NM_018300	102546	-	CR749856|ZNF808|388558|zinc finger protein 808##NM_001039886|ZNF808|388558|zinc finger protein 808##AB091373|ZNF578|147660|zinc finger protein 578##AB091374|ZNF578|147660|zinc finger protein 578##AK299106|ZNF578|147660|zinc finger protein 578##NM_001099694|ZNF578|147660|zinc finger protein 578##AB091376|ZNF578|147660|zinc finger protein 578##AB091375|ZNF578|147660|zinc finger protein 578##AB086839|ZNF534|147658|zinc finger protein 534##AB086840|ZNF534|147658|zinc finger protein 534##NM_001143938|ZNF534|147658|zinc finger protein 534##NM_001143939|ZNF534|147658|zinc finger protein 534##NM_018260|ZNF701|55762|zinc finger protein 701##AK001753|ZNF701|55762|zinc finger protein 701##BC131719|ZNF701|55762|zinc finger protein 701##BC136425|ZNF701|55762|zinc finger protein 701##BC136426|ZNF701|55762|zinc finger protein 701##BC054884|ZNF701|55762|zinc finger protein 701##BC080612|ZNF701|55762|zinc finger protein 701##BC067346|ZNF701|55762|zinc finger protein 701##NM_001172655|ZNF701|55762|zinc finger protein 701##BC032867|ZNF83|55769|zinc finger protein 83##AK027518|ZNF83|55769|zinc finger protein 83##NM_001105549|ZNF83|55769|zinc finger protein 83##NM_001105550|ZNF83|55769|zinc finger protein 83##NM_001105551|ZNF83|55769|zinc finger protein 83##NM_001105552|ZNF83|55769|zinc finger protein 83##NM_001105553|ZNF83|55769|zinc finger protein 83##NM_001105554|ZNF83|55769|zinc finger protein 83##NM_018300|ZNF83|55769|zinc finger protein 83	0.0	0.015608	
chr2	61111092	61111172	reg1006595.p1	4.477	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	-2345	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	-2395	+	TSC_hg19_v1_chr2_+_61108702 AK303926	-2427	+	TSC_hg19_v1_chr2_-_61244326 AK291729 BC065197	133185	-	AK311426 NM_002618 TSC_hg19_v1_chr2_+_61244828	133637	+	TSC_hg19_v1_chr2_+_61244858 AK315244 AB022192 AF048755 BC067090 BC020547 BC040953 BC048804 BC035584 AB528913 CU688242 U71374	133742	+	BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK291729|PUS10|150962|pseudouridylate synthase 10##NM_002618|PEX13|5194|peroxisomal biogenesis factor 13##AK315244|PEX13|5194|peroxisomal biogenesis factor 13##AB022192|PEX13|5194|peroxisomal biogenesis factor 13##AF048755|PEX13|5194|peroxisomal biogenesis factor 13##BC067090|PEX13|5194|peroxisomal biogenesis factor 13##U71374|PEX13|5194|peroxisomal biogenesis factor 13	0.997674	0.0	denovo_WM_7:-30:0.432	denovo_WM_7:-31:0.245	denovo_WM_7:-32:0.257
chr7	46719837	46719931	reg1008616.p2	4.477	+	DQ884396 DQ884397 DQ884398 AB590345 DQ895344 BC018962 BC000013 M31159 BC064987 TSC_hg19_v1_chr7_-_45960872 AK075483 AK095991 AK123735 AK055632 AK056274 AK091706 AK091745 AK092447 AK095408 AK095864 AK095869 AK095900 AK095907 AK095974 AK097201 AK122873 AK125224 AK127537 AK129951 AK130884 AK297767 AK298143 AK315668 AX747551 NM_000598 NM_001013398 X64875	-759078	-	AF042356 TSC_hg19_v1_chr7_+_45933167	-786750	+	NM_000596 TSC_hg19_v1_chr7_+_45928086 AK314925 BC057806 M31145 BC035263 X12385 M20841 X13405 Y00856 BT019685 FJ795026	-791779	+	TSC_hg19_v1_chr7_-_47579207 BC071791	859325	-	TSC_hg19_v1_chr7_-_47621681 CR749644	901779	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	901899	-	DQ884396|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884397|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884398|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ895344|IGFBP3|3486|insulin-like growth factor binding protein 3##BC018962|IGFBP3|3486|insulin-like growth factor binding protein 3##BC000013|IGFBP3|3486|insulin-like growth factor binding protein 3##M31159|IGFBP3|3486|insulin-like growth factor binding protein 3##BC064987|IGFBP3|3486|insulin-like growth factor binding protein 3##AK075483|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095991|IGFBP3|3486|insulin-like growth factor binding protein 3##AK123735|IGFBP3|3486|insulin-like growth factor binding protein 3##AK055632|IGFBP3|3486|insulin-like growth factor binding protein 3##AK056274|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091706|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091745|IGFBP3|3486|insulin-like growth factor binding protein 3##AK092447|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095408|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095864|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095869|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095900|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095907|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095974|IGFBP3|3486|insulin-like growth factor binding protein 3##AK097201|IGFBP3|3486|insulin-like growth factor binding protein 3##AK122873|IGFBP3|3486|insulin-like growth factor binding protein 3##AK125224|IGFBP3|3486|insulin-like growth factor binding protein 3##AK127537|IGFBP3|3486|insulin-like growth factor binding protein 3##AK129951|IGFBP3|3486|insulin-like growth factor binding protein 3##AK130884|IGFBP3|3486|insulin-like growth factor binding protein 3##AK297767|IGFBP3|3486|insulin-like growth factor binding protein 3##AK298143|IGFBP3|3486|insulin-like growth factor binding protein 3##AK315668|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000598|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_001013398|IGFBP3|3486|insulin-like growth factor binding protein 3##X64875|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000596|IGFBP1|3484|insulin-like growth factor binding protein 1##AK314925|IGFBP1|3484|insulin-like growth factor binding protein 1##BC057806|IGFBP1|3484|insulin-like growth factor binding protein 1##M31145|IGFBP1|3484|insulin-like growth factor binding protein 1##BC035263|IGFBP1|3484|insulin-like growth factor binding protein 1##X12385|IGFBP1|3484|insulin-like growth factor binding protein 1##M20841|IGFBP1|3484|insulin-like growth factor binding protein 1##X13405|IGFBP1|3484|insulin-like growth factor binding protein 1##Y00856|IGFBP1|3484|insulin-like growth factor binding protein 1##BT019685|IGFBP1|3484|insulin-like growth factor binding protein 1##FJ795026|IGFBP1|3484|insulin-like growth factor binding protein 1##BC071791|TNS3|64759|tensin 3##CR749644|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3	0.0	0.0	
chr12	111848765	111848896	reg1001889.p1	4.476	+	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	-5081	+	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	-41920	-	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	-41984	-	AK126309 TSC_hg19_v1_chr12_-_111893987	45093	-	TSC_hg19_v1_chr12_-_112036257 AK095017	187445	-	TSC_hg19_v1_chr12_-_112036908 AK307803	188083	-	AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3##BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##AK095017|ATXN2|6311|ataxin 2##AK307803|ATXN2|6311|ataxin 2	0.0	0.0	
chr16	10875595	10875720	reg1008548.p4	4.476	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-37953	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-86892	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-201167	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	36891	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	95455	+	BC071683 TSC_hg19_v1_chr16_-_11036171	160509	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	2.876694	0.0	denovo_WM_7:-29:0.865	denovo_WM_7:55:0.275	denovo_WM_7:56:0.712	denovo_WM_7:71:0.847
chr8	56852544	56852724	reg1005783.p2	4.476	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-60114	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-60239	+	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	-60269	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	134452	-	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	173906	-	TSC_hg19_v1_chr8_-_57123833 U65002	271201	-	AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1	0.0	0.0	
chrX	111908280	111908408	reg1009723.p1	4.476	+	AK128465 NM_001004308	-582092	+	AF054568 NM_012471	-582341	-	BC034811 NM_001195577	-783220	+	BC100785 BC100786 BC100787 AY217350 NM_178175 AK289946	14995	-	AB384557 AY987378 NM_001113490	158009	-	TSC_hg19_v1_chrX_-_112084116 AF286598 NM_133265 AK301573	175718	-	AK128465|ZCCHC16|340595|zinc finger, CCHC domain containing 16##NM_001004308|ZCCHC16|340595|zinc finger, CCHC domain containing 16##AF054568|TRPC5|7224|transient receptor potential cation channel, subfamily C, member 5##NM_012471|TRPC5|7224|transient receptor potential cation channel, subfamily C, member 5##BC034811|LOC100329135|100329135|uncharacterized LOC100329135##NM_001195577|LOC100329135|100329135|uncharacterized LOC100329135##BC100785|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##BC100786|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##BC100787|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AY217350|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##NM_178175|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AK289946|LHFPL1|340596|lipoma HMGIC fusion partner-like 1##AY987378|AMOT|154796|angiomotin##NM_001113490|AMOT|154796|angiomotin##AF286598|AMOT|154796|angiomotin##NM_133265|AMOT|154796|angiomotin##AK301573|AMOT|154796|angiomotin	0.997336	0.0	denovo_WM_7:75:0.771
chr10	101882742	101882896	reg1009778.p1	4.475	+	X14329 BC027897 NM_001308 AK313972	-41194	-	TSC_hg19_v1_chr10_-_101769671 AL833283 NM_015221	-113158	-	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	-192116	-	TSC_hg19_v1_chr10_-_101945727 NM_006459 AK222480 AK298427 AK315580	62917	-	TSC_hg19_v1_chr10_-_101945787 AF064093 NM_001100626	62983	-	U22512 AF012890 AB590489 BC092514 TSC_hg19_v1_chr10_-_101989331 AF009225 AB209028	106447	-	X14329|CPN1|1369|carboxypeptidase N, polypeptide 1##BC027897|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_001308|CPN1|1369|carboxypeptidase N, polypeptide 1##AK313972|CPN1|1369|carboxypeptidase N, polypeptide 1##AL833283|DNMBP|23268|dynamin binding protein##NM_015221|DNMBP|23268|dynamin binding protein##AK128576|DNMBP|23268|dynamin binding protein##NM_006459|ERLIN1|10613|ER lipid raft associated 1##AK222480|ERLIN1|10613|ER lipid raft associated 1##AK298427|ERLIN1|10613|ER lipid raft associated 1##AK315580|ERLIN1|10613|ER lipid raft associated 1##AF064093|ERLIN1|10613|ER lipid raft associated 1##NM_001100626|ERLIN1|10613|ER lipid raft associated 1##U22512|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF012890|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC092514|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF009225|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AB209028|CHUK|1147|conserved helix-loop-helix ubiquitous kinase	1.51251	0.0	denovo_WM_7:-9:0.937	denovo_WM_7:-24:0.445
chr2	37593025	37593163	reg1013988.p1	4.475	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-21281	+	BC030706 BC012820 AB015982 NM_005813	-48901	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-134248	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	305685	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	306295	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	559338	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.0	0.0	
chr6	135547706	135547862	reg1008676.p1	4.475	+	TSC_hg19_v1_chr6_+_135517056 X17469	-30695	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	-30878	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-45198	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	271041	-	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	271101	-	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	271180	+	X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271	0.992876	0.0	denovo_WM_7:-76:0.295	denovo_WM_7:-77:0.295	denovo_WM_7:-78:0.295
chr7	122289851	122289989	reg1008882.p1	4.475	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-345331	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-505631	-	TSC_hg19_v1_chr7_+_121513214 U88967	-776699	+	BC022038 AF447589 NM_139175 AK098524	49277	-	AK058116 AK098654 BC029264 NM_198085	53072	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	236578	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	1.973983	0.0	denovo_WM_7:39:0.861	denovo_WM_7:54:0.862
chr9	135726262	135726419	reg1013956.p1	4.475	+	AF142328 NM_012204 TSC_hg19_v1_chr9_+_135545875 BC094774 BC011619 BC022787 BC104755 BC112245 AB529214	-180484	+	AF335567 AF335568 AF335569 AF427339 AK027484 NM_022779 NM_138620	-180553	-	TSC_hg19_v1_chr9_+_135545447 BC060821	-180922	+	TSC_hg19_v1_chr9_+_135753719 BC012940	27428	+	BC037402 BC050576 NM_152572	27840	-	AK075259 AJ011375 NM_018956	27946	+	AF142328|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##NM_012204|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC094774|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC011619|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC022787|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC104755|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC112245|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##AF335567|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF335568|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF335569|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AF427339|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##AK027484|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##NM_022779|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##NM_138620|DDX31|64794|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31##BC060821|GTF3C4|9329|general transcription factor IIIC, polypeptide 4, 90kDa##BC012940|C9orf9|11092|chromosome 9 open reading frame 9##BC037402|AK8|158067|adenylate kinase 8##BC050576|AK8|158067|adenylate kinase 8##NM_152572|AK8|158067|adenylate kinase 8##AK075259|C9orf9|11092|chromosome 9 open reading frame 9##AJ011375|C9orf9|11092|chromosome 9 open reading frame 9##NM_018956|C9orf9|11092|chromosome 9 open reading frame 9	0.991722	0.0	denovo_WM_7:-44:0.228	denovo_WM_7:-45:0.228	denovo_WM_7:-46:0.228	denovo_WM_7:-47:0.228
chr12	101795422	101795547	reg1011259.p1	4.474	+	TSC_hg19_v1_chr12_+_101673904 NM_014503 AK307934 AJ006778	-121579	+	AK313788 AF536216 AY081220 NM_145913	-191485	-	NM_178826 TSC_hg19_v1_chr12_+_101188522 AK091591 AX747079 AK316105 AK293810	-606930	+	TSC_hg19_v1_chr12_-_101801573 AK311793 AK302911 AK299062 BC007000 BX537387 NM_001177	6059	-	AK296681 NM_002465 NM_206819 NM_206820 NM_206821 AK056587 AK292976 AK295727 AK303401 BC015187 BC030980 BC065720 TSC_hg19_v1_chr12_+_101988748 BC092418 X66276 X73114 AL831993 AL832000 AL832332 AL832350 AL832354 AL832456 BC117217 BC143495 BC143502 BC143503 BC143504 AL834249 BX649073 AB385254 AM392734 EU831907 EU832001	193312	+	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	296138	+	NM_014503|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK307934|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AJ006778|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK313788|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AF536216|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AY081220|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##NM_145913|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##NM_178826|ANO4|121601|anoctamin 4##AK091591|ANO4|121601|anoctamin 4##AK316105|ANO4|121601|anoctamin 4##AK293810|ANO4|121601|anoctamin 4##AK311793|ARL1|400|ADP-ribosylation factor-like 1##AK302911|ARL1|400|ADP-ribosylation factor-like 1##AK299062|ARL1|400|ADP-ribosylation factor-like 1##BC007000|ARL1|400|ADP-ribosylation factor-like 1##BX537387|ARL1|400|ADP-ribosylation factor-like 1##NM_001177|ARL1|400|ADP-ribosylation factor-like 1##AK296681|MYBPC1|4604|myosin binding protein C, slow type##NM_002465|MYBPC1|4604|myosin binding protein C, slow type##NM_206819|MYBPC1|4604|myosin binding protein C, slow type##NM_206820|MYBPC1|4604|myosin binding protein C, slow type##NM_206821|MYBPC1|4604|myosin binding protein C, slow type##AK056587|MYBPC1|4604|myosin binding protein C, slow type##AK292976|MYBPC1|4604|myosin binding protein C, slow type##AK295727|MYBPC1|4604|myosin binding protein C, slow type##AK303401|MYBPC1|4604|myosin binding protein C, slow type##BC015187|MYBPC1|4604|myosin binding protein C, slow type##BC030980|MYBPC1|4604|myosin binding protein C, slow type##BC065720|MYBPC1|4604|myosin binding protein C, slow type##BC092418|MYBPC1|4604|myosin binding protein C, slow type##X66276|MYBPC1|4604|myosin binding protein C, slow type##X73114|MYBPC1|4604|myosin binding protein C, slow type##AL831993|MYBPC1|4604|myosin binding protein C, slow type##AL832000|MYBPC1|4604|myosin binding protein C, slow type##AL832332|MYBPC1|4604|myosin binding protein C, slow type##AL832350|MYBPC1|4604|myosin binding protein C, slow type##AL832354|MYBPC1|4604|myosin binding protein C, slow type##AL832456|MYBPC1|4604|myosin binding protein C, slow type##BC117217|MYBPC1|4604|myosin binding protein C, slow type##BC143495|MYBPC1|4604|myosin binding protein C, slow type##BC143502|MYBPC1|4604|myosin binding protein C, slow type##BC143503|MYBPC1|4604|myosin binding protein C, slow type##BC143504|MYBPC1|4604|myosin binding protein C, slow type##AL834249|MYBPC1|4604|myosin binding protein C, slow type##BX649073|MYBPC1|4604|myosin binding protein C, slow type##AM392734|MYBPC1|4604|myosin binding protein C, slow type##EU831907|MYBPC1|4604|myosin binding protein C, slow type##EU832001|MYBPC1|4604|myosin binding protein C, slow type##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1	1.36125	0.0	denovo_WM_7:-62:0.284
chr13	25497613	25497743	reg1003679.p2	4.474	+	TSC_hg19_v1_chr13_-_25497054 NM_018451	-609	-	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	-709	-	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	-159359	+	NM_030979 AL136900 AK313336 BC045608 BC027617 AF132026 DQ892103 DQ895297	172627	+	AK098343 BC032653 TSC_hg19_v1_chr13_-_25745701	247982	-	TSC_hg19_v1_chr13_-_25745778 NM_152704 NM_199138	248139	-	NM_018451|CENPJ|55835|centromere protein J##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##NM_030979|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AL136900|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AK313336|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##BC045608|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##BC027617|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AF132026|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##DQ892103|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##DQ895297|PABPC3|5042|poly(A) binding protein, cytoplasmic 3##AK098343|FAM123A|219287|family with sequence similarity 123A##BC032653|FAM123A|219287|family with sequence similarity 123A##NM_152704|FAM123A|219287|family with sequence similarity 123A##NM_199138|FAM123A|219287|family with sequence similarity 123A	0.568488	0.0	denovo_WM_7:-11:0.376
chr21	17112840	17112954	reg1012835.p1	4.474	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-10356	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-10572	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-675680	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	1772266	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	1772474	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	1872243	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	1.975488	0.0	denovo_WM_7:71:0.393	denovo_WM_7:72:0.295	denovo_WM_7:88:0.297	denovo_WM_7:89:0.396
chr5	112294299	112294406	reg1011515.p1	4.474	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	-36365	-	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	-97328	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	-97423	+	TSC_hg19_v1_chr5_+_112312407 NM_001242377 NM_152624	18053	+	TSC_hg19_v1_chr5_+_112312506 AY135173 AY146650 BC017965 AK296361 AK090564 AX746512 BC064593 BC068042 CU687920	18176	+	M62397 AK096212 TSC_hg19_v1_chr5_-_112630346	335973	-	AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##NM_001242377|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##NM_152624|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY135173|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY146650|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC017965|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK296361|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK090564|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC064593|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC068042|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##M62397|MCC|4163|mutated in colorectal cancers##AK096212|MCC|4163|mutated in colorectal cancers	0.0	0.0	
chr9	92841577	92841695	reg1012441.p2	4.474	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	-621655	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-728629	-	BC054500 NM_001142287 NM_006378	-747026	-	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	563483	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	722400	+	TSC_hg19_v1_chr9_+_93564068 Z29630 BC001645 BC002962	722431	+	NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase##Z29630|SYK|6850|spleen tyrosine kinase##BC001645|SYK|6850|spleen tyrosine kinase##BC002962|SYK|6850|spleen tyrosine kinase	0.99772	0.0	denovo_WM_7:19:0.527	denovo_WM_7:20:0.470
chr10	105726172	105726334	reg1012989.p1	4.473	+	TSC_hg19_v1_chr10_-_105677986 NM_024928	-48238	-	TSC_hg19_v1_chr10_-_105677943 BC017400	-48324	-	TSC_hg19_v1_chr10_-_105615306 NM_014631	-110983	-	TSC_hg19_v1_chr10_+_105726926 AK307389	633	+	TSC_hg19_v1_chr10_+_105726941 BC047885 BC064804 BC047762 BC036736 D86959	711	+	AF273048 NM_014720 BC111565 BC008697	1234	+	NM_024928|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1##BC017400|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1##NM_014631|SH3PXD2A|9644|SH3 and PX domains 2A##AK307389|SLK|9748|STE20-like kinase##BC047885|SLK|9748|STE20-like kinase##BC064804|SLK|9748|STE20-like kinase##BC047762|SLK|9748|STE20-like kinase##BC036736|SLK|9748|STE20-like kinase##D86959|SLK|9748|STE20-like kinase##AF273048|SLK|9748|STE20-like kinase##NM_014720|SLK|9748|STE20-like kinase##BC111565|SLK|9748|STE20-like kinase##BC008697|SLK|9748|STE20-like kinase	2.254454	0.0	denovo_WM_7:-62:0.825	denovo_WM_7:-77:0.844
chr12	118500464	118500602	reg1010173.p2	4.473	+	TSC_hg19_v1_chr12_-_118499892 AK295555	-598	-	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	-1598	-	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	-45965	+	TSC_hg19_v1_chr12_-_118541813 BC001437 BC028698 BC034471 NM_019086 AK000681	41217	-	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	73342	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	73390	+	AK295555|WSB2|55884|WD repeat and SOCS box containing 2##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2##NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001437|VSIG10|54621|V-set and immunoglobulin domain containing 10##BC028698|VSIG10|54621|V-set and immunoglobulin domain containing 10##BC034471|VSIG10|54621|V-set and immunoglobulin domain containing 10##NM_019086|VSIG10|54621|V-set and immunoglobulin domain containing 10##AK000681|VSIG10|54621|V-set and immunoglobulin domain containing 10##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1	0.991923	0.0	denovo_WM_7:17:0.864
chr16	25060379	25060485	reg1001356.p1	4.473	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-33740	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-33820	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-91540	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	17857	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	62629	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	62765	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	0.0	0.0	
chr19	12978650	12978772	reg1004660.p1	4.473	+	NM_014975 TSC_hg19_v1_chr19_+_12949305 AB023190 AK297553 AB384551	-29390	+	TSC_hg19_v1_chr19_-_12946243 BC005063 NM_031429 AK093672 AX748256	-32470	-	TSC_hg19_v1_chr19_-_12945394 AB593122	-33319	-	FJ752529 BT007047 BC010419 TSC_hg19_v1_chr19_-_12992222	13476	-	AK075449 TSC_hg19_v1_chr19_-_12992251 AF047016 AB004574 AK297493 AF045937 AK315358 BC065209 AF060222 AK311145 NM_001375	13580	-	AB463820 BC033580 BC040000 U65404 NM_006563	19275	-	NM_014975|MAST1|22983|microtubule associated serine/threonine kinase 1##AB023190|MAST1|22983|microtubule associated serine/threonine kinase 1##AK297553|MAST1|22983|microtubule associated serine/threonine kinase 1##BC005063|RTBDN|83546|retbindin##NM_031429|RTBDN|83546|retbindin##AK093672|RTBDN|83546|retbindin##AB593122|RTBDN|83546|retbindin##FJ752529|DNASE2|1777|deoxyribonuclease II, lysosomal##BT007047|DNASE2|1777|deoxyribonuclease II, lysosomal##BC010419|DNASE2|1777|deoxyribonuclease II, lysosomal##AK075449|DNASE2|1777|deoxyribonuclease II, lysosomal##AF047016|DNASE2|1777|deoxyribonuclease II, lysosomal##AB004574|DNASE2|1777|deoxyribonuclease II, lysosomal##AK297493|DNASE2|1777|deoxyribonuclease II, lysosomal##AF045937|DNASE2|1777|deoxyribonuclease II, lysosomal##AK315358|DNASE2|1777|deoxyribonuclease II, lysosomal##BC065209|DNASE2|1777|deoxyribonuclease II, lysosomal##AF060222|DNASE2|1777|deoxyribonuclease II, lysosomal##AK311145|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_001375|DNASE2|1777|deoxyribonuclease II, lysosomal##BC033580|KLF1|10661|Kruppel-like factor 1 (erythroid)##BC040000|KLF1|10661|Kruppel-like factor 1 (erythroid)##U65404|KLF1|10661|Kruppel-like factor 1 (erythroid)##NM_006563|KLF1|10661|Kruppel-like factor 1 (erythroid)	0.0	0.0	
chr19	40562481	40562642	reg1010968.p1	4.473	+	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	-435	-	NM_178544 AK122968 AK292528 BC045649	-59576	+	TSC_hg19_v1_chr19_+_40477090 AF020736 AK313183 NM_006503 NM_153001 BC010396 AK310135 AF038965 BC000343 BC014488 BC018811 U27515 AK290285 DQ891875 DQ894876 BT007232 CU679695	-85491	+	TSC_hg19_v1_chr19_-_40596843 AK091274 AX746890 NM_001010880 AK131328 BC021982 NM_001142577 NM_001142578 NM_001142579	34251	-	TSC_hg19_v1_chr19_+_40697520 NM_002446 X90846 Z48615	135085	+	TSC_hg19_v1_chr19_-_40724275 AK054935 AK289550 BC029539 NM_152479	161727	-	AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##AF020736|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK313183|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_006503|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_153001|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC010396|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK310135|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AF038965|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC000343|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC014488|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC018811|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##U27515|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK290285|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ891875|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ894876|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BT007232|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK091274|ZNF780A|284323|zinc finger protein 780A##NM_001010880|ZNF780A|284323|zinc finger protein 780A##AK131328|ZNF780A|284323|zinc finger protein 780A##BC021982|ZNF780A|284323|zinc finger protein 780A##NM_001142577|ZNF780A|284323|zinc finger protein 780A##NM_001142578|ZNF780A|284323|zinc finger protein 780A##NM_001142579|ZNF780A|284323|zinc finger protein 780A##NM_002446|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##X90846|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##Z48615|MAP3K10|4294|mitogen-activated protein kinase kinase kinase 10##AK054935|TTC9B|148014|tetratricopeptide repeat domain 9B##AK289550|TTC9B|148014|tetratricopeptide repeat domain 9B##BC029539|TTC9B|148014|tetratricopeptide repeat domain 9B##NM_152479|TTC9B|148014|tetratricopeptide repeat domain 9B	1.356471	0.0	denovo_WM_7:12:0.323	denovo_WM_7:13:0.303	denovo_WM_7:14:0.303	denovo_WM_7:31:0.341
chr4	141805759	141805877	reg1012008.p1	4.473	+	NM_015130 TSC_hg19_v1_chr4_-_141677529	-128319	-	U28480 BC069556 BC096736 BC098168 BC098258 BC098352 NM_021833	-315898	-	TSC_hg19_v1_chr4_+_141445351 BX648843 BC015168 AK093087	-360463	+	TSC_hg19_v1_chr4_-_142054516 AB033040 NM_020724	248713	-	TSC_hg19_v1_chr4_+_142142051 NM_014487 AK315463 BC004421	336237	+	TSC_hg19_v1_chr4_+_142142087 AK294089 AK223609 AK002106 AJ006591	336268	+	NM_015130|TBC1D9|23158|TBC1 domain family, member 9 (with GRAM domain)##U28480|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC069556|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC096736|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098168|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098258|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BC098352|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##NM_021833|UCP1|7350|uncoupling protein 1 (mitochondrial, proton carrier)##BX648843|ELMOD2|255520|ELMO/CED-12 domain containing 2##BC015168|ELMOD2|255520|ELMO/CED-12 domain containing 2##AK093087|ELMOD2|255520|ELMO/CED-12 domain containing 2##AB033040|RNF150|57484|ring finger protein 150##NM_020724|RNF150|57484|ring finger protein 150##NM_014487|ZNF330|27309|zinc finger protein 330##AK315463|ZNF330|27309|zinc finger protein 330##BC004421|ZNF330|27309|zinc finger protein 330##AK294089|ZNF330|27309|zinc finger protein 330##AK223609|ZNF330|27309|zinc finger protein 330##AK002106|ZNF330|27309|zinc finger protein 330##AJ006591|ZNF330|27309|zinc finger protein 330	0.36068	0.261299	denovo_WM_7:26:0.289	CTCF.p2:-26:0.261
chr6	160209402	160209518	reg1010925.p1	4.473	+	AK294273 TSC_hg19_v1_chr6_+_160183510	-25933	+	TSC_hg19_v1_chr6_+_160183076 AF356877 AK225244 S70154 AK225089 AK291080 AB208993 BC000408 AB384814 CU674200	-26370	+	NM_005891 TSC_hg19_v1_chr6_+_160183028	-26444	+	BT006969 CU674328 DQ890600 DQ893771 X52882 TSC_hg19_v1_chr6_-_160210635 BC000665	1131	-	TSC_hg19_v1_chr6_-_160210701 AK308551 AK312604 NM_001008897 NM_030752	1257	-	TSC_hg19_v1_chr6_+_160210978 AK311391	1543	+	AK294273|ACAT2|39|acetyl-CoA acetyltransferase 2##AF356877|ACAT2|39|acetyl-CoA acetyltransferase 2##AK225244|ACAT2|39|acetyl-CoA acetyltransferase 2##S70154|ACAT2|39|acetyl-CoA acetyltransferase 2##AK225089|ACAT2|39|acetyl-CoA acetyltransferase 2##AK291080|ACAT2|39|acetyl-CoA acetyltransferase 2##AB208993|ACAT2|39|acetyl-CoA acetyltransferase 2##BC000408|ACAT2|39|acetyl-CoA acetyltransferase 2##NM_005891|ACAT2|39|acetyl-CoA acetyltransferase 2##BT006969|TCP1|6950|t-complex 1##DQ890600|TCP1|6950|t-complex 1##DQ893771|TCP1|6950|t-complex 1##X52882|TCP1|6950|t-complex 1##BC000665|TCP1|6950|t-complex 1##AK312604|TCP1|6950|t-complex 1##NM_001008897|TCP1|6950|t-complex 1##NM_030752|TCP1|6950|t-complex 1##AK311391|MRPL18|29074|mitochondrial ribosomal protein L18	0.773859	0.0	denovo_WM_7:3:0.688
chr6_dbb_hap3	3514265	3514397	reg1015057.p1	4.473	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.991459	0.0	denovo_WM_7:-28:0.458	denovo_WM_7:-29:0.534
chr9	1917640	1917773	reg1010710.p1	4.473	+	AF130729 NM_181872	-867097	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-867336	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	-867362	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	97590	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	704101	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	704368	+	AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor	0.98085	0.0	denovo_WM_7:63:0.363	denovo_WM_7:64:0.407
chr10	52156782	52156901	reg1012587.p1	4.472	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-148501	-	NM_018232	-318956	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-329119	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	226862	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	342869	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	488552	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.804966	0.0	denovo_WM_7:-19:0.619
chr11	35934525	35934659	reg1010340.p2	4.472	+	AB529107 CU680538 DQ891061 DQ894241 TSC_hg19_v1_chr11_+_35684686	-249919	+	TSC_hg19_v1_chr11_+_35684427 BC024031 AK074242 AJ249128	-250142	+	TSC_hg19_v1_chr11_+_35684404 BC013166 NM_017583	-250219	+	BC136286 BC143823 BC143824 TSC_hg19_v1_chr11_+_35965585 AK293930 AK075546 AK299186 NM_174902 BC042754	31019	+	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	376361	-	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	376394	-	DQ891061|TRIM44|54765|tripartite motif containing 44##DQ894241|TRIM44|54765|tripartite motif containing 44##BC024031|TRIM44|54765|tripartite motif containing 44##AK074242|TRIM44|54765|tripartite motif containing 44##AJ249128|TRIM44|54765|tripartite motif containing 44##BC013166|TRIM44|54765|tripartite motif containing 44##NM_017583|TRIM44|54765|tripartite motif containing 44##BC136286|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143823|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143824|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK293930|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK075546|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK299186|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##NM_174902|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC042754|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9	0.0	0.0	
chr1	1678682	1678803	reg1011249.p1	4.472	+	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	-1281	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	-22966	-	AB007916 TSC_hg19_v1_chr1_-_1624212 NM_001110781	-54525	-	AK296722 NM_001198995	11338	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	31144	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	31527	-	AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AB007916|SLC35E2B|728661|solute carrier family 35, member E2B##NM_001110781|SLC35E2B|728661|solute carrier family 35, member E2B##AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase	0.991955	0.027668	denovo_WM_7:-54:0.837
chr12	11731414	11731566	reg1015213.p1	4.472	+	BC044827 NM_006248	-182999	-	BC044827 K03205 K03206 BC141917 K03204 NM_005039 NM_199353 NM_199354 AX772842	-222974	-	BC130386 BC035362 K03207 NM_002723 BC128191	-268130	-	TSC_hg19_v1_chr12_+_11802659 AK289441	71183	+	TSC_hg19_v1_chr12_+_11802787 BC043399 NM_001987	71284	+	TSC_hg19_v1_chr12_+_11802905 U11732 AB385079 EU446474 CU692162 Z35761 FR719953	71496	+	BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_006248|PRB2|653247|proline-rich protein BstNI subfamily 2##BC044827|PRB1|5542|proline-rich protein BstNI subfamily 1##K03205|PRB1|5542|proline-rich protein BstNI subfamily 1##K03206|PRB1|5542|proline-rich protein BstNI subfamily 1##BC141917|PRB1|5542|proline-rich protein BstNI subfamily 1##K03204|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_005039|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199353|PRB1|5542|proline-rich protein BstNI subfamily 1##NM_199354|PRB1|5542|proline-rich protein BstNI subfamily 1##BC130386|PRB4|5545|proline-rich protein BstNI subfamily 4##BC035362|PRB4|5545|proline-rich protein BstNI subfamily 4##K03207|PRB4|5545|proline-rich protein BstNI subfamily 4##NM_002723|PRB4|5545|proline-rich protein BstNI subfamily 4##BC128191|PRB4|5545|proline-rich protein BstNI subfamily 4##AK289441|ETV6|2120|ets variant 6##BC043399|ETV6|2120|ets variant 6##NM_001987|ETV6|2120|ets variant 6##U11732|ETV6|2120|ets variant 6##EU446474|ETV6|2120|ets variant 6##Z35761|ETV6|2120|ets variant 6	0.472504	0.0	
chr12	117323224	117323311	reg1009802.p1	4.472	+	NM_003806 U76376	-4036	-	TSC_hg19_v1_chr12_+_117176119 NM_001109903 NM_032814 BC011878 AK027533	-147148	+	TSC_hg19_v1_chr12_-_117175868 AK222983 AK298857	-147398	-	TSC_hg19_v1_chr12_+_117348781 BC037296 NM_012174 NM_153348 AK289621 AF176707 BC075823	25519	+	DQ894644 TSC_hg19_v1_chr12_-_117537222 AF443207 BC015221 NM_001168325 NM_017899 AK000614	213996	-	AL136899 TSC_hg19_v1_chr12_-_117628277 BC091496 AF174601 AB020682 AK001699 AK314573 BC034045 BC042333 AK308141 NM_015002 NM_033624	304958	-	NM_003806|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##U76376|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##NM_001109903|RNFT2|84900|ring finger protein, transmembrane 2##NM_032814|RNFT2|84900|ring finger protein, transmembrane 2##BC011878|RNFT2|84900|ring finger protein, transmembrane 2##AK027533|RNFT2|84900|ring finger protein, transmembrane 2##AK222983|C12orf49|79794|chromosome 12 open reading frame 49##AK298857|C12orf49|79794|chromosome 12 open reading frame 49##BC037296|FBXW8|26259|F-box and WD repeat domain containing 8##NM_012174|FBXW8|26259|F-box and WD repeat domain containing 8##NM_153348|FBXW8|26259|F-box and WD repeat domain containing 8##AK289621|FBXW8|26259|F-box and WD repeat domain containing 8##AF176707|FBXW8|26259|F-box and WD repeat domain containing 8##DQ894644|TESC|54997|tescalcin##AF443207|TESC|54997|tescalcin##BC015221|TESC|54997|tescalcin##NM_001168325|TESC|54997|tescalcin##NM_017899|TESC|54997|tescalcin##AK000614|TESC|54997|tescalcin##AL136899|FBXO21|23014|F-box protein 21##BC091496|FBXO21|23014|F-box protein 21##AF174601|FBXO21|23014|F-box protein 21##AB020682|FBXO21|23014|F-box protein 21##AK001699|FBXO21|23014|F-box protein 21##AK314573|FBXO21|23014|F-box protein 21##BC034045|FBXO21|23014|F-box protein 21##BC042333|FBXO21|23014|F-box protein 21##AK308141|FBXO21|23014|F-box protein 21##NM_015002|FBXO21|23014|F-box protein 21##NM_033624|FBXO21|23014|F-box protein 21	0.998151	0.0	
chr13	68090316	68090418	reg1008029.p2	4.472	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	-285863	-	AK289924 NM_022843	-6100713	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-6101114	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	2592174	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	4349892	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	4350396	-	BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)	0.0	0.0	
chr17	76774022	76774182	reg1002902.p1	4.472	+	TSC_hg19_v1_chr17_-_76732958 AK311535	-41104	-	TSC_hg19_v1_chr17_-_76719676 AK293894	-54351	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-54455	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	4251	-	BC071582 TSC_hg19_v1_chr17_-_76836610	62548	-	TSC_hg19_v1_chr17_-_76836843 AK225426	62681	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36##AK225426|USP36|57602|ubiquitin specific peptidase 36	0.0	0.0	
chr20	33840999	33841136	reg1010733.p1	4.472	+	AB021227 NM_006690 AF131284 DQ300264 BC047614	-26499	+	AK314887 NM_006404 BC014451 X89079 L35545 CR456948 DQ892834 DQ896081	-81202	+	CR457266 CU674674 TSC_hg19_v1_chr20_-_33735112 BC016184 AK300212 AY358580 BC001371 AK023931 AK303816 AK001645 NM_001145025 NM_018217	-105943	-	TSC_hg19_v1_chr20_-_33865907 AK296878	24885	-	CR456764 AB463619 DQ892592 DQ895811 TSC_hg19_v1_chr20_-_33872363 AF022229	31273	-	NM_181468 TSC_hg19_v1_chr20_-_33872566 AB062289 BC019305 Y11435 AK296076 BC095465 BC011845	31470	-	AB021227|MMP24|10893|matrix metallopeptidase 24 (membrane-inserted)##NM_006690|MMP24|10893|matrix metallopeptidase 24 (membrane-inserted)##AF131284|MMP24|10893|matrix metallopeptidase 24 (membrane-inserted)##DQ300264|MMP24|10893|matrix metallopeptidase 24 (membrane-inserted)##BC047614|MMP24|10893|matrix metallopeptidase 24 (membrane-inserted)##AK314887|PROCR|10544|protein C receptor, endothelial##NM_006404|PROCR|10544|protein C receptor, endothelial##BC014451|PROCR|10544|protein C receptor, endothelial##X89079|PROCR|10544|protein C receptor, endothelial##L35545|PROCR|10544|protein C receptor, endothelial##CR456948|PROCR|10544|protein C receptor, endothelial##DQ892834|PROCR|10544|protein C receptor, endothelial##DQ896081|PROCR|10544|protein C receptor, endothelial##CR457266|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC016184|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK300212|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AY358580|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC001371|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK023931|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK303816|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK001645|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_001145025|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_018217|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK296878|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##CR456764|EIF6|3692|eukaryotic translation initiation factor 6##DQ892592|EIF6|3692|eukaryotic translation initiation factor 6##DQ895811|EIF6|3692|eukaryotic translation initiation factor 6##AF022229|EIF6|3692|eukaryotic translation initiation factor 6##NM_181468|EIF6|3692|eukaryotic translation initiation factor 6##AB062289|EIF6|3692|eukaryotic translation initiation factor 6##BC019305|EIF6|3692|eukaryotic translation initiation factor 6##Y11435|EIF6|3692|eukaryotic translation initiation factor 6##AK296076|EIF6|3692|eukaryotic translation initiation factor 6##BC095465|EIF6|3692|eukaryotic translation initiation factor 6##BC011845|EIF6|3692|eukaryotic translation initiation factor 6	0.991799	0.0	
chr4	110963978	110964088	reg1012663.p1	4.472	+	AK299306 NM_001178130 NM_001178131 NM_001963 X04571	-129986	+	AK126648 NM_198506	-191548	+	NM_006583 BC128120 BC128121 BC128401	-214880	+	TSC_hg19_v1_chr4_-_111119772 BC001305 AK027031 NM_001130721 NM_024090	155752	-	TSC_hg19_v1_chr4_+_111397181 AM888273 AM888274 AM888275 AM888276 AM888277 AM888278 AM888279 AM888280 AM888281 AM888282 AM888283 NM_001977 BC094770 L12468 BX641012 L14721 AK313412	433340	+	AK313987 TSC_hg19_v1_chr4_-_111543909	579877	-	AK299306|EGF|1950|epidermal growth factor##NM_001178130|EGF|1950|epidermal growth factor##NM_001178131|EGF|1950|epidermal growth factor##NM_001963|EGF|1950|epidermal growth factor##X04571|EGF|1950|epidermal growth factor##AK126648|LRIT3|345193|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3##NM_198506|LRIT3|345193|leucine-rich repeat, immunoglobulin-like and transmembrane domains 3##NM_006583|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC128120|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC128121|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC128401|RRH|10692|retinal pigment epithelium-derived rhodopsin homolog##BC001305|ELOVL6|79071|ELOVL fatty acid elongase 6##AK027031|ELOVL6|79071|ELOVL fatty acid elongase 6##NM_001130721|ELOVL6|79071|ELOVL fatty acid elongase 6##NM_024090|ELOVL6|79071|ELOVL fatty acid elongase 6##AM888273|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888274|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888275|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888276|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888277|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888278|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888279|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888280|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888281|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888282|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AM888283|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##NM_001977|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##BC094770|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##L12468|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##BX641012|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##L14721|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AK313412|ENPEP|2028|glutamyl aminopeptidase (aminopeptidase A)##AK313987|PITX2|5308|paired-like homeodomain 2	0.995568	0.0	
chr9	135819978	135820137	reg1011982.p1	4.472	+	TSC_hg19_v1_chr9_-_135820004 AK303030 AK308412 AK297326 AF013168 BC108668 AK299654 BC070032 NM_000368 NM_001162426 NM_001162427	-48	-	TSC_hg19_v1_chr9_-_135819985 BC121000 AB190910 BC047772	-84	-	AK075259 AJ011375 NM_018956	-65771	+	AY428733 NM_001135031 NM_004188	34040	+	TSC_hg19_v1_chr9_+_135894809 BC070500	74750	+	NM_001122823 NM_012087 TSC_hg19_v1_chr9_+_135906094 AK225761 AK311481 AK055092 AF133124 BC011355 BC017337	86042	+	AK303030|TSC1|7248|tuberous sclerosis 1##AK308412|TSC1|7248|tuberous sclerosis 1##AK297326|TSC1|7248|tuberous sclerosis 1##AF013168|TSC1|7248|tuberous sclerosis 1##BC108668|TSC1|7248|tuberous sclerosis 1##AK299654|TSC1|7248|tuberous sclerosis 1##BC070032|TSC1|7248|tuberous sclerosis 1##NM_000368|TSC1|7248|tuberous sclerosis 1##NM_001162426|TSC1|7248|tuberous sclerosis 1##NM_001162427|TSC1|7248|tuberous sclerosis 1##BC121000|TSC1|7248|tuberous sclerosis 1##AB190910|TSC1|7248|tuberous sclerosis 1##BC047772|TSC1|7248|tuberous sclerosis 1##AK075259|C9orf9|11092|chromosome 9 open reading frame 9##AJ011375|C9orf9|11092|chromosome 9 open reading frame 9##NM_018956|C9orf9|11092|chromosome 9 open reading frame 9##AY428733|GFI1B|8328|growth factor independent 1B transcription repressor##NM_001135031|GFI1B|8328|growth factor independent 1B transcription repressor##NM_004188|GFI1B|8328|growth factor independent 1B transcription repressor##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001122823|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##NM_012087|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK225761|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK311481|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK055092|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AF133124|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC011355|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC017337|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa	0.0	0.0	
chr10	91890828	91890962	reg1010198.p2	4.471	+	TSC_hg19_v1_chr10_+_91498725 AK025628	-392128	+	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	-429520	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-485571	-	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	726551	-	BC047526 NM_000872 NM_019859 NM_019860 TSC_hg19_v1_chr10_-_92617758	726838	-	TSC_hg19_v1_chr10_+_92631241 BC006991	740362	+	AK025628|KIF20B|9585|kinesin family member 20B##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##BC047526|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_000872|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019859|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##NM_019860|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##BC006991|RPP30|10556|ribonuclease P/MRP 30kDa subunit	0.998555	0.0	denovo_WM_7:-1:0.435	denovo_WM_7:-2:0.435
chr1	155516602	155516765	reg1005043.p2	4.471	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-222391	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-222741	-	BC052277 NM_001105205	-222956	+	AF257305 TSC_hg19_v1_chr1_-_155532251	15523	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	15684	-	TSC_hg19_v1_chr1_-_155532562 AK307595	15898	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	1.361251	0.0	denovo_WM_7:72:0.284
chr2	44402798	44402957	reg1011576.p2	4.471	+	TSC_hg19_v1_chr2_+_44396066 AL833035	-6767	+	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	-6862	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-179738	-	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	99758	+	BC143061 BC143062 DQ023506 DQ023507 NM_001042385 NM_001042386	183993	-	DQ023503 DQ023504 DQ023505 NM_006036	184935	-	AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC143061|PREPL|9581|prolyl endopeptidase-like##BC143062|PREPL|9581|prolyl endopeptidase-like##DQ023506|PREPL|9581|prolyl endopeptidase-like##DQ023507|PREPL|9581|prolyl endopeptidase-like##NM_001042385|PREPL|9581|prolyl endopeptidase-like##NM_001042386|PREPL|9581|prolyl endopeptidase-like##DQ023503|PREPL|9581|prolyl endopeptidase-like##DQ023504|PREPL|9581|prolyl endopeptidase-like##DQ023505|PREPL|9581|prolyl endopeptidase-like##NM_006036|PREPL|9581|prolyl endopeptidase-like	0.9938	0.0	denovo_WM_7:54:0.248	denovo_WM_7:55:0.248	denovo_WM_7:56:0.248	denovo_WM_7:57:0.248
chr13	90757790	90757876	reg1009187.p1	4.470	+	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	-2432964	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-4384394	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-6301333	-	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	1293071	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	3121594	+	AK293115 BC028311 DQ902581 S69231 BC104476 L18967 AJ000503 D17547 NM_001129889 NM_001922	4373993	-	AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6##AK293115|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##BC028311|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##DQ902581|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##S69231|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##L18967|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##AJ000503|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##D17547|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001129889|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)##NM_001922|DCT|1638|dopachrome tautomerase (dopachrome delta-isomerase, tyrosine-related protein 2)	0.986083	0.0	denovo_WM_7:23:0.844
chr15	75301352	75301532	reg1003981.p4	4.470	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-13535	+	AK000381 NM_017793	-51668	-	CU675593 AY034074 BC002497 BC007270 TSC_hg19_v1_chr15_-_75249114	-52418	-	NM_021823 TSC_hg19_v1_chr15_+_75315930	14486	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	14539	+	AK128205 TSC_hg19_v1_chr15_+_75491259	189804	+	AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK000381|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_017793|RPP25|54913|ribonuclease P/MRP 25kDa subunit##AY034074|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC002497|RPP25|54913|ribonuclease P/MRP 25kDa subunit##BC007270|RPP25|54913|ribonuclease P/MRP 25kDa subunit##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK128205|C15orf39|56905|chromosome 15 open reading frame 39	0.042934	0.0	
chr17	9335784	9335964	reg1012984.p2	4.470	+	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	-410907	+	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	-466893	-	AY725853 AF128881 NM_014308	-520058	-	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	143257	-	TSC_hg19_v1_chr17_-_9479156 BC009713 AF062077 AF115323 NM_004853	143332	-	NM_001080556 NM_145054 AK074435 AB065281 BC025392 AK094847 AK315679 CU692990	144103	+	NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8##BC009713|STX8|9482|syntaxin 8##AF062077|STX8|9482|syntaxin 8##AF115323|STX8|9482|syntaxin 8##NM_004853|STX8|9482|syntaxin 8##NM_001080556|WDR16|146845|WD repeat domain 16##NM_145054|WDR16|146845|WD repeat domain 16##AK074435|WDR16|146845|WD repeat domain 16##AB065281|WDR16|146845|WD repeat domain 16##BC025392|WDR16|146845|WD repeat domain 16##AK094847|WDR16|146845|WD repeat domain 16##AK315679|WDR16|146845|WD repeat domain 16	0.808215	0.0	denovo_WM_7:-50:0.366	denovo_WM_7:-52:0.400
chr2	169706380	169706504	reg1014138.p1	4.470	+	NM_001039724 NM_001171632 BC014189 NM_052946 AK002203 AK290254 BC093072 AJ532842 DQ402497	-47315	+	AK093444 AX748130 NM_001171631	-63394	+	TSC_hg19_v1_chr2_+_169312801 NM_203463 BC109284 BC109285 AB527953	-393567	+	TSC_hg19_v1_chr2_-_169746945 AF225416 BC022255 NM_020675 AK291093	40499	-	BC104778 BC113376 NM_001081686 NM_021176 CR627438 HQ258182	51353	+	AF091582 NM_003742	181390	-	NM_001039724|NOSTRIN|115677|nitric oxide synthase trafficker##NM_001171632|NOSTRIN|115677|nitric oxide synthase trafficker##BC014189|NOSTRIN|115677|nitric oxide synthase trafficker##NM_052946|NOSTRIN|115677|nitric oxide synthase trafficker##AK002203|NOSTRIN|115677|nitric oxide synthase trafficker##AK290254|NOSTRIN|115677|nitric oxide synthase trafficker##BC093072|NOSTRIN|115677|nitric oxide synthase trafficker##AJ532842|NOSTRIN|115677|nitric oxide synthase trafficker##DQ402497|NOSTRIN|115677|nitric oxide synthase trafficker##AK093444|NOSTRIN|115677|nitric oxide synthase trafficker##NM_001171631|NOSTRIN|115677|nitric oxide synthase trafficker##NM_203463|CERS6|253782|ceramide synthase 6##BC109284|CERS6|253782|ceramide synthase 6##BC109285|CERS6|253782|ceramide synthase 6##AF225416|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC022255|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_020675|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK291093|SPC25|57405|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC104778|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##BC113376|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##NM_001081686|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##NM_021176|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##CR627438|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##HQ258182|G6PC2|57818|glucose-6-phosphatase, catalytic, 2##AF091582|ABCB11|8647|ATP-binding cassette, sub-family B (MDR/TAP), member 11##NM_003742|ABCB11|8647|ATP-binding cassette, sub-family B (MDR/TAP), member 11	0.998362	0.0	denovo_WM_7:-4:0.494	denovo_WM_7:-5:0.494
chr2	180114782	180114938	reg1010342.p2	4.470	+	AL832777 NM_173648	-200075	-	X90568 BC013396 TSC_hg19_v1_chr2_-_179672150 AK056602 BC029400 BC058824 BC070170 NM_003319 NM_133378 NM_133379 NM_133432 NM_133437	-442757	-	X98114 X98115 TSC_hg19_v1_chr2_-_179659718	-455159	-	AY209190 TSC_hg19_v1_chr2_-_180129277 AK096232 NM_178123 BC047578	14545	-	AK057999 NM_001113398	312454	-	AK096822 NM_001113397	495908	-	AL832777|CCDC141|285025|coiled-coil domain containing 141##NM_173648|CCDC141|285025|coiled-coil domain containing 141##X90568|TTN|7273|titin##BC013396|TTN|7273|titin##AK056602|TTN|7273|titin##BC029400|TTN|7273|titin##BC058824|TTN|7273|titin##BC070170|TTN|7273|titin##NM_003319|TTN|7273|titin##NM_133378|TTN|7273|titin##NM_133379|TTN|7273|titin##NM_133432|TTN|7273|titin##NM_133437|TTN|7273|titin##X98114|TTN|7273|titin##X98115|TTN|7273|titin##AY209190|SESTD1|91404|SEC14 and spectrin domains 1##AK096232|SESTD1|91404|SEC14 and spectrin domains 1##NM_178123|SESTD1|91404|SEC14 and spectrin domains 1##BC047578|SESTD1|91404|SEC14 and spectrin domains 1##AK057999|ZNF385B|151126|zinc finger protein 385B##NM_001113398|ZNF385B|151126|zinc finger protein 385B##AK096822|ZNF385B|151126|zinc finger protein 385B##NM_001113397|ZNF385B|151126|zinc finger protein 385B	0.037511	0.0	
chr14	34482750	34482891	reg1009694.p1	4.469	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-62671	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1074330	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1684284	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	448667	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	526065	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	616535	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.0	0.0	
chr15	63454614	63454783	reg1013505.p2	4.469	+	BC031307 TSC_hg19_v1_chr15_-_63449677 AF070668 BC003667 BC047648 AK024591 NM_015920	-5089	-	TSC_hg19_v1_chr15_+_63414037 AY358709 BC037198	-40645	+	NM_032857 NM_171846 BC067288 TSC_hg19_v1_chr15_+_63414026 AK027808	-40682	+	TSC_hg19_v1_chr15_+_63481724 NM_016530 AB038995	27031	+	TSC_hg19_v1_chr15_+_63481804 AK001111 AK095444 AK297598 AL833365 BC020654 AB464123 CU676608	27107	+	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	115115	+	BC031307|RPS27L|51065|ribosomal protein S27-like##AF070668|RPS27L|51065|ribosomal protein S27-like##BC003667|RPS27L|51065|ribosomal protein S27-like##BC047648|RPS27L|51065|ribosomal protein S27-like##AK024591|RPS27L|51065|ribosomal protein S27-like##NM_015920|RPS27L|51065|ribosomal protein S27-like##AY358709|LACTB|114294|lactamase, beta##BC037198|LACTB|114294|lactamase, beta##NM_032857|LACTB|114294|lactamase, beta##NM_171846|LACTB|114294|lactamase, beta##BC067288|LACTB|114294|lactamase, beta##AK027808|LACTB|114294|lactamase, beta##NM_016530|RAB8B|51762|RAB8B, member RAS oncogene family##AB038995|RAB8B|51762|RAB8B, member RAS oncogene family##AK001111|RAB8B|51762|RAB8B, member RAS oncogene family##AK095444|RAB8B|51762|RAB8B, member RAS oncogene family##AK297598|RAB8B|51762|RAB8B, member RAS oncogene family##AL833365|RAB8B|51762|RAB8B, member RAS oncogene family##BC020654|RAB8B|51762|RAB8B, member RAS oncogene family##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)	0.997236	0.0	
chr16	87808476	87808656	reg1002757.p2	4.469	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-8996	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-9051	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-171856	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	94509	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	161581	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	176602	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.0	0.0	
chr7	117002488	117002632	reg1008617.p2	4.469	+	BC078170 AK056742 NM_003391 X07876	-39225	-	TSC_hg19_v1_chr7_+_116660294 AY009152 AY009153 AK297510	-342195	+	TSC_hg19_v1_chr7_+_116660271 AK093212	-342293	+	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	64985	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	117478	+	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	510921	-	BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##AY009152|ST7|7982|suppression of tumorigenicity 7##AY009153|ST7|7982|suppression of tumorigenicity 7##AK297510|ST7|7982|suppression of tumorigenicity 7##AK093212|ST7|7982|suppression of tumorigenicity 7##HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2	0.996152	0.0	denovo_WM_7:-81:0.900
chr7	141400198	141400378	reg1013656.p1	4.469	+	NM_018238 TSC_hg19_v1_chr7_+_141251215 AK304502 AK001704 AK299131 AK222769 AJ278150 BC009775	-149131	+	NM_001195278	-626257	+	NM_053035 TSC_hg19_v1_chr7_-_140714792	-685502	-	TSC_hg19_v1_chr7_-_141401967 AB032973 NM_001080392 AB384573	1646	-	AK131218 NM_001105558	7864	+	TSC_hg19_v1_chr7_+_141438200 BC008402 BC093054 AK294393 AF277319 M94556 NM_003143 AK311200 AK313033 BC000895	37976	+	NM_018238|AGK|55750|acylglycerol kinase##AK304502|AGK|55750|acylglycerol kinase##AK001704|AGK|55750|acylglycerol kinase##AK299131|AGK|55750|acylglycerol kinase##AK222769|AGK|55750|acylglycerol kinase##AJ278150|AGK|55750|acylglycerol kinase##BC009775|AGK|55750|acylglycerol kinase##NM_001195278|LOC100507421|100507421|transmembrane protein 178-like##NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33##AB032973|KIAA1147|57189|KIAA1147##NM_001080392|KIAA1147|57189|KIAA1147##AK131218|WEE2|494551|WEE1 homolog 2 (S. pombe)##NM_001105558|WEE2|494551|WEE1 homolog 2 (S. pombe)##BC008402|SSBP1|6742|single-stranded DNA binding protein 1##BC093054|SSBP1|6742|single-stranded DNA binding protein 1##AK294393|SSBP1|6742|single-stranded DNA binding protein 1##AF277319|SSBP1|6742|single-stranded DNA binding protein 1##M94556|SSBP1|6742|single-stranded DNA binding protein 1##NM_003143|SSBP1|6742|single-stranded DNA binding protein 1##AK313033|SSBP1|6742|single-stranded DNA binding protein 1##BC000895|SSBP1|6742|single-stranded DNA binding protein 1	1.87844	0.0	denovo_WM_7:-2:0.625	denovo_WM_7:-3:0.242	denovo_WM_7:-62:0.862
chr8	33412548	33412701	reg1009983.p1	4.469	+	AK026916 TSC_hg19_v1_chr8_-_33370644 BX648410 BC007387 BC066935 NM_025115 NM_001102401	-41997	-	NM_032509 TSC_hg19_v1_chr8_+_33342703 AK314491 AK225476 AK027469 BC015965 AF251062 BC039740 BC028230 BC050528 CU690708	-69920	+	AK098505 AK297132 TSC_hg19_v1_chr8_-_33330636 AK303231 AJ512465 AJ535838 AJ535839 AK292993 AJ582015 NM_032664	-81978	-	AK022588 NM_024787 TSC_hg19_v1_chr8_-_33424647	12039	-	TSC_hg19_v1_chr8_-_33457295 BC067804	44663	-	AB237597 AB103376 AY902194 BC001613 NM_024025 TSC_hg19_v1_chr8_-_33457473	44835	-	AK026916|TTI2|80185|TELO2 interacting protein 2##BX648410|TTI2|80185|TELO2 interacting protein 2##BC007387|TTI2|80185|TELO2 interacting protein 2##BC066935|TTI2|80185|TELO2 interacting protein 2##NM_025115|TTI2|80185|TELO2 interacting protein 2##NM_001102401|TTI2|80185|TELO2 interacting protein 2##NM_032509|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK314491|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK225476|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK027469|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC015965|MAK16|84549|MAK16 homolog (S. cerevisiae)##AF251062|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC039740|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC028230|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC050528|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK098505|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK297132|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK303231|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ512465|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535838|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535839|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK292993|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ582015|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##NM_032664|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK022588|RNF122|79845|ring finger protein 122##NM_024787|RNF122|79845|ring finger protein 122##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB237597|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB103376|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY902194|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC001613|DUSP26|78986|dual specificity phosphatase 26 (putative)##NM_024025|DUSP26|78986|dual specificity phosphatase 26 (putative)	1.297062	0.0	denovo_WM_7:79:0.606	denovo_WM_7:99:0.333
chr11	118972866	118973046	reg1006008.p2	4.468	+	NM_001382 AK095718	-139	-	AK225994 BC000325 BC047771 BC008817 TSC_hg19_v1_chr11_-_118972586 AK301973 AK312783	-398	-	TSC_hg19_v1_chr11_-_118966176 NM_002105 X14850	-6781	-	TSC_hg19_v1_chr11_+_118978097 AB094094 AK025223 NM_014807	5171	+	TSC_hg19_v1_chr11_+_118978191 BC022219	5227	+	NM_001243259 NM_015517 NM_198971 TSC_hg19_v1_chr11_+_118992297 AK300288 BC017234 AK056362 BC012856 AK301452	19327	+	NM_001382|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK095718|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK225994|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC000325|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##BC047771|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK301973|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##AK312783|DPAGT1|1798|dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)##NM_002105|H2AFX|3014|H2A histone family, member X##X14850|H2AFX|3014|H2A histone family, member X##AB094094|C2CD2L|9854|C2CD2-like##AK025223|C2CD2L|9854|C2CD2-like##NM_014807|C2CD2L|9854|C2CD2-like##BC022219|C2CD2L|9854|C2CD2-like##NM_001243259|HINFP|25988|histone H4 transcription factor##NM_015517|HINFP|25988|histone H4 transcription factor##NM_198971|HINFP|25988|histone H4 transcription factor##AK300288|HINFP|25988|histone H4 transcription factor##BC017234|HINFP|25988|histone H4 transcription factor##AK056362|HINFP|25988|histone H4 transcription factor##BC012856|HINFP|25988|histone H4 transcription factor##AK301452|HINFP|25988|histone H4 transcription factor	0.0	0.0	
chr1	181045018	181045148	reg1013098.p1	4.468	+	CU680340 TSC_hg19_v1_chr1_+_181003143 AF031469 AF010447	-41933	+	AF010446 AJ249778 BC012485 U22963 TSC_hg19_v1_chr1_+_181003139	-41944	+	AK304645 AK290374 TSC_hg19_v1_chr1_+_181003128 AK222910	-41982	+	NM_016545	12554	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	12782	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	407617	+	AF031469|MR1|3140|major histocompatibility complex, class I-related##AF010447|MR1|3140|major histocompatibility complex, class I-related##AF010446|MR1|3140|major histocompatibility complex, class I-related##AJ249778|MR1|3140|major histocompatibility complex, class I-related##BC012485|MR1|3140|major histocompatibility complex, class I-related##U22963|MR1|3140|major histocompatibility complex, class I-related##AK304645|MR1|3140|major histocompatibility complex, class I-related##AK290374|MR1|3140|major histocompatibility complex, class I-related##AK222910|MR1|3140|major histocompatibility complex, class I-related##NM_016545|IER5|51278|immediate early response 5##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit	0.986697	0.0	denovo_WM_7:73:0.321	denovo_WM_7:74:0.321	denovo_WM_7:75:0.321
chr3	67585182	67585272	reg1009865.p2	4.468	+	NM_032505 AK096640 AK300397	-536499	+	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	-1033763	-	AF381545 BC140907 NM_015541 AY730707	-1034375	-	BC007716 BC047024 TSC_hg19_v1_chr3_-_67705027 AK294598 AK310527 BC068602 NM_001177599 NM_003848	119835	-	BC038210 TSC_hg19_v1_chr3_+_67705138 AL832184	119923	+	AY325114 NM_001252216	455506	+	NM_032505|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK096640|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK300397|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC007716|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##BC047024|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AK294598|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AK310527|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##BC068602|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##NM_001177599|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##NM_003848|SUCLG2|8801|succinate-CoA ligase, GDP-forming, beta subunit##AY325114|FAM19A1|407738|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1##NM_001252216|FAM19A1|407738|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1	1.993629	0.0	denovo_WM_7:-9:0.492	denovo_WM_7:-10:0.328	denovo_WM_7:-25:0.331	denovo_WM_7:-26:0.495
chr10	112370185	112370318	reg1011274.p2	4.467	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-26136	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-42759	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	-112500	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	33878	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	261361	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	261463	+	AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)	0.0	0.329631	CTCF.p2:-21:0.330
chr11	35986437	35986577	reg1014565.p1	4.467	+	BC136286 BC143823 BC143824 TSC_hg19_v1_chr11_+_35965585 AK293930 AK075546 AK299186 NM_174902 BC042754	-20896	+	AB529107 CU680538 DQ891061 DQ894241 TSC_hg19_v1_chr11_+_35684686	-301834	+	TSC_hg19_v1_chr11_+_35684427 BC024031 AK074242 AJ249128	-302057	+	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	324446	-	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	324479	-	NM_001160167 AK055042	331273	+	BC136286|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143823|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143824|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK293930|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK075546|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK299186|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##NM_174902|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC042754|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##DQ891061|TRIM44|54765|tripartite motif containing 44##DQ894241|TRIM44|54765|tripartite motif containing 44##BC024031|TRIM44|54765|tripartite motif containing 44##AK074242|TRIM44|54765|tripartite motif containing 44##AJ249128|TRIM44|54765|tripartite motif containing 44##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like	0.998933	0.0	denovo_WM_7:39:0.815
chr12	751061	751127	reg1007272.p1	4.467	+	AB089940 NM_173593	-181552	+	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	-240313	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-252492	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	1084	+	TSC_hg19_v1_chr12_-_752800 AK298043	1725	-	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	21621	-	AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2	0.999208	0.0	denovo_WM_7:-72:0.239	denovo_WM_7:-73:0.239	denovo_WM_7:-74:0.239	denovo_WM_7:-75:0.239
chr17	12987926	12988042	reg1011575.p2	4.467	+	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	-66628	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	-66665	-	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	-66708	-	AY358838 TSC_hg19_v1_chr17_-_13505228 AF105376 NM_006042 AK292047	517253	-	TSC_hg19_v1_chr17_-_13972756 AK123100	984778	-	NM_001303 TSC_hg19_v1_chr17_+_13972839 AK312718	984795	+	AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AY358838|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AF105376|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_006042|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AK292047|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_001303|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK312718|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	0.0	0.0	
chr20	39740199	39740312	reg1011960.p1	4.467	+	BC136297 TSC_hg19_v1_chr20_+_39657671 U07804 U07806	-82591	+	AK310516 NM_003286 AK225095 AK292943 BC039009 BC004475 TSC_hg19_v1_chr20_+_39657500 AK310508 BC067349 J03250	-82761	+	BC036689 NM_005461 TSC_hg19_v1_chr20_-_39317877	-422378	-	TSC_hg19_v1_chr20_+_39765861 AB210028	25607	+	TSC_hg19_v1_chr20_+_39766146 NM_002660 NM_182811 BC136466 BC144136 M34667	25933	+	TSC_hg19_v1_chr20_-_39766625 BC035080	26353	-	BC136297|TOP1|7150|topoisomerase (DNA) I##U07804|TOP1|7150|topoisomerase (DNA) I##U07806|TOP1|7150|topoisomerase (DNA) I##NM_003286|TOP1|7150|topoisomerase (DNA) I##AK225095|TOP1|7150|topoisomerase (DNA) I##AK292943|TOP1|7150|topoisomerase (DNA) I##BC039009|TOP1|7150|topoisomerase (DNA) I##BC004475|TOP1|7150|topoisomerase (DNA) I##AK310508|TOP1|7150|topoisomerase (DNA) I##BC067349|TOP1|7150|topoisomerase (DNA) I##J03250|TOP1|7150|topoisomerase (DNA) I##BC036689|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_005461|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##AB210028|PLCG1|5335|phospholipase C, gamma 1##NM_002660|PLCG1|5335|phospholipase C, gamma 1##NM_182811|PLCG1|5335|phospholipase C, gamma 1##BC136466|PLCG1|5335|phospholipase C, gamma 1##BC144136|PLCG1|5335|phospholipase C, gamma 1##M34667|PLCG1|5335|phospholipase C, gamma 1	0.99805	0.0	denovo_WM_7:-5:0.951
chr2	162246254	162246378	reg1006020.p1	4.467	+	TSC_hg19_v1_chr2_+_162164996 U86782	-81293	+	NM_005805 TSC_hg19_v1_chr2_+_162164936 BC066336	-81454	+	TSC_hg19_v1_chr2_+_162016938 AK313096 NM_001199135 BC067779	-229367	+	NM_006593 BC104844 BC113418 TSC_hg19_v1_chr2_+_162272726	26365	+	TSC_hg19_v1_chr2_+_162272830 AK297438 AK312567 AK226050 BC029289	26505	+	TSC_hg19_v1_chr2_+_162272908 U49250 AB529217 HQ258587	26590	+	U86782|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##NM_005805|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##BC066336|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##AK313096|TANK|10010|TRAF family member-associated NFKB activator##NM_001199135|TANK|10010|TRAF family member-associated NFKB activator##BC067779|TANK|10010|TRAF family member-associated NFKB activator##NM_006593|TBR1|10716|T-box, brain, 1##BC104844|TBR1|10716|T-box, brain, 1##BC113418|TBR1|10716|T-box, brain, 1##AK297438|TBR1|10716|T-box, brain, 1##AK312567|TBR1|10716|T-box, brain, 1##AK226050|TBR1|10716|T-box, brain, 1##BC029289|TBR1|10716|T-box, brain, 1##U49250|TBR1|10716|T-box, brain, 1##HQ258587|TBR1|10716|T-box, brain, 1	1.872606	0.0	denovo_WM_7:73:0.753
chr11	120081571	120081704	reg1006414.p2	4.466	+	TSC_hg19_v1_chr11_-_120008858 AF230388 AF230389 L24203 NM_012101	-72782	-	BC017352 BC010644 TSC_hg19_v1_chr11_-_120008822 AK223090 AK122720	-72825	-	AB464321 CU675956 EU446943 TSC_hg19_v1_chr11_-_120008772	-72882	-	TSC_hg19_v1_chr11_+_120081739 BC047726 NM_178507 BC008339	76	+	AK302212 NM_001244682	25711	+	AK291993 NM_014352 AF162278 BC101649 BC143593 BC143594 BC143595 AF133895 AJ012214 EU446698	29340	+	AF230388|TRIM29|23650|tripartite motif containing 29##AF230389|TRIM29|23650|tripartite motif containing 29##L24203|TRIM29|23650|tripartite motif containing 29##NM_012101|TRIM29|23650|tripartite motif containing 29##BC017352|TRIM29|23650|tripartite motif containing 29##BC010644|TRIM29|23650|tripartite motif containing 29##AK223090|TRIM29|23650|tripartite motif containing 29##AK122720|TRIM29|23650|tripartite motif containing 29##EU446943|TRIM29|23650|tripartite motif containing 29##BC047726|OAF|220323|OAF homolog (Drosophila)##NM_178507|OAF|220323|OAF homolog (Drosophila)##BC008339|OAF|220323|OAF homolog (Drosophila)##AK302212|POU2F3|25833|POU class 2 homeobox 3##NM_001244682|POU2F3|25833|POU class 2 homeobox 3##AK291993|POU2F3|25833|POU class 2 homeobox 3##NM_014352|POU2F3|25833|POU class 2 homeobox 3##AF162278|POU2F3|25833|POU class 2 homeobox 3##BC101649|POU2F3|25833|POU class 2 homeobox 3##BC143593|POU2F3|25833|POU class 2 homeobox 3##BC143594|POU2F3|25833|POU class 2 homeobox 3##BC143595|POU2F3|25833|POU class 2 homeobox 3##AF133895|POU2F3|25833|POU class 2 homeobox 3##AJ012214|POU2F3|25833|POU class 2 homeobox 3##EU446698|POU2F3|25833|POU class 2 homeobox 3	0.0	0.0	
chr1	167191665	167191778	reg1011577.p1	4.466	+	TSC_hg19_v1_chr1_+_167190127 NM_001198786 NM_002697 AK302525 AK303201 AK308004 AK091438 S66901 BC052274 X13403	-1664	+	NM_001080426	-127635	+	CU687006 BC074830 BC074876 TSC_hg19_v1_chr1_-_167059615 BC107164 BC107165 AK312833 BC069705 BC069723 BC069745 BC069761 BC069789 NM_005814 U79725	-132026	-	NM_001198783 TSC_hg19_v1_chr1_+_167298306	106577	+	TSC_hg19_v1_chr1_+_167298389 AY113189 BC001664 BC003571	106718	+	AB590419 CU693020 DQ893778 EU176191 X55510 X55511 X55512 BC025703 AK128376 AK313946 J04132 AK223325 NM_000734 NM_198053	296052	-	NM_001198786|POU2F1|5451|POU class 2 homeobox 1##NM_002697|POU2F1|5451|POU class 2 homeobox 1##AK302525|POU2F1|5451|POU class 2 homeobox 1##AK303201|POU2F1|5451|POU class 2 homeobox 1##AK308004|POU2F1|5451|POU class 2 homeobox 1##AK091438|POU2F1|5451|POU class 2 homeobox 1##BC052274|POU2F1|5451|POU class 2 homeobox 1##X13403|POU2F1|5451|POU class 2 homeobox 1##NM_001080426|DUSP27|92235|dual specificity phosphatase 27 (putative)##BC074830|GPA33|10223|glycoprotein A33 (transmembrane)##BC074876|GPA33|10223|glycoprotein A33 (transmembrane)##BC107164|GPA33|10223|glycoprotein A33 (transmembrane)##BC107165|GPA33|10223|glycoprotein A33 (transmembrane)##AK312833|GPA33|10223|glycoprotein A33 (transmembrane)##BC069705|GPA33|10223|glycoprotein A33 (transmembrane)##BC069723|GPA33|10223|glycoprotein A33 (transmembrane)##BC069745|GPA33|10223|glycoprotein A33 (transmembrane)##BC069761|GPA33|10223|glycoprotein A33 (transmembrane)##BC069789|GPA33|10223|glycoprotein A33 (transmembrane)##NM_005814|GPA33|10223|glycoprotein A33 (transmembrane)##U79725|GPA33|10223|glycoprotein A33 (transmembrane)##NM_001198783|POU2F1|5451|POU class 2 homeobox 1##AY113189|POU2F1|5451|POU class 2 homeobox 1##BC001664|POU2F1|5451|POU class 2 homeobox 1##BC003571|POU2F1|5451|POU class 2 homeobox 1##DQ893778|CD247|919|CD247 molecule##EU176191|CD247|919|CD247 molecule##X55510|CD247|919|CD247 molecule##X55511|CD247|919|CD247 molecule##X55512|CD247|919|CD247 molecule##BC025703|CD247|919|CD247 molecule##AK128376|CD247|919|CD247 molecule##AK313946|CD247|919|CD247 molecule##J04132|CD247|919|CD247 molecule##AK223325|CD247|919|CD247 molecule##NM_000734|CD247|919|CD247 molecule##NM_198053|CD247|919|CD247 molecule	0.195703	0.0	
chr16	32945415	32945533	reg1011547.p2	4.466	+	AK300387 TSC_hg19_v1_chr16_+_32752635	-192838	+	AL133588 NM_016212	-257422	-	CR541650 AK312220 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AB023508	-258041	-	AL133588 NM_016212	259505	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	260124	+	AL133588 NM_016212	316040	+	AK300387|LOC100289574|100289574|hect domain and RLD 2 pseudogene##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AK312220|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AB023508|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3	1.863398	0.0	denovo_WM_7:-50:0.777	denovo_WM_7:-65:0.650	denovo_WM_7:-66:0.237
chr17	41671234	41671400	reg1007274.p1	4.466	+	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-47591	-	BC016623 AK290429 AK299019 AK312934 NM_001986	-48042	-	D12765 TSC_hg19_v1_chr17_-_41622738 DQ396626	-48577	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	67598	-	NM_001040002 AK291139	67958	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	164826	-	AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC016623|ETV4|2118|ets variant 4##AK290429|ETV4|2118|ets variant 4##AK299019|ETV4|2118|ets variant 4##AK312934|ETV4|2118|ets variant 4##NM_001986|ETV4|2118|ets variant 4##D12765|ETV4|2118|ets variant 4##DQ396626|ETV4|2118|ets variant 4##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin	1.693181	0.0	denovo_WM_7:46:0.639	denovo_WM_7:61:0.830
chr9	127962377	127962537	reg1010778.p1	4.466	+	AK295752 TSC_hg19_v1_chr9_-_127952069 AK312332 BC006990 AK316527 AK295190 AK299087 NM_001123355 NM_001123369 NM_002721	-10330	-	AB385530 AF035158 BT019708 X92972 TSC_hg19_v1_chr9_-_127952023	-10448	-	AB590983 TSC_hg19_v1_chr9_-_127905808 BC104030 BC104031 BC104032 AK098024 AK093983 AX748393 NM_001144877 NM_173690	-56666	-	TSC_hg19_v1_chr9_+_127962821 BC065725 NM_001174152 NM_001174153 AL832249 BC047023 Z97074	368	+	TSC_hg19_v1_chr9_+_127962863 NM_005833 BC000503	410	+	BC053541 TSC_hg19_v1_chr9_+_127963072	607	+	AK295752|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK312332|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC006990|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK316527|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295190|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK299087|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123355|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123369|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_002721|PPP6C|5537|protein phosphatase 6, catalytic subunit##AF035158|PPP6C|5537|protein phosphatase 6, catalytic subunit##BT019708|PPP6C|5537|protein phosphatase 6, catalytic subunit##X92972|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC104030|SCAI|286205|suppressor of cancer cell invasion##BC104031|SCAI|286205|suppressor of cancer cell invasion##BC104032|SCAI|286205|suppressor of cancer cell invasion##AK098024|SCAI|286205|suppressor of cancer cell invasion##AK093983|SCAI|286205|suppressor of cancer cell invasion##NM_001144877|SCAI|286205|suppressor of cancer cell invasion##NM_173690|SCAI|286205|suppressor of cancer cell invasion##BC065725|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_001174152|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_001174153|RABEPK|10244|Rab9 effector protein with kelch motifs##AL832249|RABEPK|10244|Rab9 effector protein with kelch motifs##BC047023|RABEPK|10244|Rab9 effector protein with kelch motifs##Z97074|RABEPK|10244|Rab9 effector protein with kelch motifs##NM_005833|RABEPK|10244|Rab9 effector protein with kelch motifs##BC000503|RABEPK|10244|Rab9 effector protein with kelch motifs##BC053541|RABEPK|10244|Rab9 effector protein with kelch motifs	1.570004	0.0	denovo_WM_7:-26:0.583	denovo_WM_7:-89:0.247	denovo_WM_7:-90:0.247	denovo_WM_7:-91:0.247	denovo_WM_7:-92:0.247
chr18	56200697	56200776	reg1013144.p1	4.465	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-311886	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-311933	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-311974	+	BX647796 NM_052947	95452	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	137905	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	137992	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	0.991725	0.0	denovo_WM_7:-44:0.331	denovo_WM_7:-45:0.331	denovo_WM_7:-46:0.331
chr19	46211129	46211310	reg1001571.p5	4.465	+	TSC_hg19_v1_chr19_+_46195931 AK000091 AK172764 AK222636 BC011553 AB528634	-15291	+	NM_001163377 NM_017659	-15479	+	NM_004597 NM_177542	-15777	-	TSC_hg19_v1_chr19_-_46220589 AK091414 AX746967	9394	-	TSC_hg19_v1_chr19_-_46234155 NM_001080469	22928	-	AB464211 TSC_hg19_v1_chr19_-_46272110	60896	-	AK000091|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK172764|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##AK222636|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##BC011553|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_001163377|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_017659|QPCTL|54814|glutaminyl-peptide cyclotransferase-like##NM_004597|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_177542|SNRPD2|6633|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa##NM_001080469|FBXO46|23403|F-box protein 46	1.04138	0.0	
chr20	19984220	19984366	reg1012613.p1	4.465	+	TSC_hg19_v1_chr20_+_19955789 M37190	-28434	+	TSC_hg19_v1_chr20_+_19915762 BC034698 AL136924	-68544	+	BC128065 NM_018993 TSC_hg19_v1_chr20_+_19870217 AB060339	-114066	+	TSC_hg19_v1_chr20_+_19997934 NM_016100 NM_181528	13640	+	TSC_hg19_v1_chr20_+_19997975 AF085355 AK311819 BC008446	13676	+	TSC_hg19_v1_chr20_+_19998005 AL136641 BC005181	13706	+	M37190|RIN2|54453|Ras and Rab interactor 2##BC034698|RIN2|54453|Ras and Rab interactor 2##AL136924|RIN2|54453|Ras and Rab interactor 2##BC128065|RIN2|54453|Ras and Rab interactor 2##NM_018993|RIN2|54453|Ras and Rab interactor 2##AB060339|RIN2|54453|Ras and Rab interactor 2##NM_016100|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##NM_181528|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##AF085355|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##AK311819|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##BC008446|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##AL136641|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit##BC005181|NAA20|51126|N(alpha)-acetyltransferase 20, NatB catalytic subunit	1.059317	0.0	denovo_WM_7:-47:0.840
chr22	40990839	40990988	reg1013849.p2	4.465	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-131483	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-224258	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-224272	+	TSC_hg19_v1_chr22_-_41032681 AF368061	41740	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	41791	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	84308	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	0.998892	0.0	
chr5	108339740	108339877	reg1010324.p2	4.465	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-255136	+	AK293376 J03358 NM_005246 AK296874	-256246	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-275828	-	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	405813	-	TSC_hg19_v1_chr5_+_109025072 BC031659	685256	+	TSC_hg19_v1_chr5_+_109025096 BC111062	685289	+	AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.044512	0.0	
chr5	146833403	146833471	reg1000861.p1	4.465	+	CU691634 AB384367 EU832180 EU832273 TSC_hg19_v1_chr5_-_146833229 BC039006 D78014 AK297223 NM_001387 Y07818	-172	-	AK094580 NM_001112724 NM_145001 TSC_hg19_v1_chr5_+_146614587 AK315942 BC021666 AK299099	-218831	+	AK294659 NM_181677 NM_181678 AK295347	-372415	-	EU007906 CU687310 EU832163 EU832257 TSC_hg19_v1_chr5_-_146889506	56029	-	BC077077 NM_001197294 TSC_hg19_v1_chr5_-_146889632	56189	-	BC003189 AB011127 TSC_hg19_v1_chr5_-_147162128 AK291280	328657	-	EU832180|DPYSL3|1809|dihydropyrimidinase-like 3##EU832273|DPYSL3|1809|dihydropyrimidinase-like 3##BC039006|DPYSL3|1809|dihydropyrimidinase-like 3##D78014|DPYSL3|1809|dihydropyrimidinase-like 3##AK297223|DPYSL3|1809|dihydropyrimidinase-like 3##NM_001387|DPYSL3|1809|dihydropyrimidinase-like 3##Y07818|DPYSL3|1809|dihydropyrimidinase-like 3##AK094580|STK32A|202374|serine/threonine kinase 32A##NM_001112724|STK32A|202374|serine/threonine kinase 32A##NM_145001|STK32A|202374|serine/threonine kinase 32A##AK315942|STK32A|202374|serine/threonine kinase 32A##BC021666|STK32A|202374|serine/threonine kinase 32A##AK299099|STK32A|202374|serine/threonine kinase 32A##AK294659|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_181677|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_181678|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##AK295347|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##EU007906|DPYSL3|1809|dihydropyrimidinase-like 3##EU832163|DPYSL3|1809|dihydropyrimidinase-like 3##EU832257|DPYSL3|1809|dihydropyrimidinase-like 3##BC077077|DPYSL3|1809|dihydropyrimidinase-like 3##NM_001197294|DPYSL3|1809|dihydropyrimidinase-like 3##BC003189|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AB011127|JAKMIP2|9832|janus kinase and microtubule interacting protein 2##AK291280|JAKMIP2|9832|janus kinase and microtubule interacting protein 2	1.772469	0.0	denovo_WM_7:-17:0.711
chr11	46140692	46140872	reg1003599.p1	4.464	+	TSC_hg19_v1_chr11_+_45944226 BC037291	-196566	+	AK055829 AK096021 NM_152312	-197599	+	TSC_hg19_v1_chr11_-_45939595 AF118240 NM_004813 NM_057174	-201162	-	TSC_hg19_v1_chr11_-_46142986 AK023258 NM_001101802 NM_016621	2215	-	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	158423	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	158778	+	BC037291|GYLTL1B|120071|glycosyltransferase-like 1B##AK055829|GYLTL1B|120071|glycosyltransferase-like 1B##AK096021|GYLTL1B|120071|glycosyltransferase-like 1B##NM_152312|GYLTL1B|120071|glycosyltransferase-like 1B##AF118240|PEX16|9409|peroxisomal biogenesis factor 16##NM_004813|PEX16|9409|peroxisomal biogenesis factor 16##NM_057174|PEX16|9409|peroxisomal biogenesis factor 16##AK023258|PHF21A|51317|PHD finger protein 21A##NM_001101802|PHF21A|51317|PHD finger protein 21A##NM_016621|PHF21A|51317|PHD finger protein 21A##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1	0.0	0.0	
chr12	1573625	1573765	reg1014878.p1	4.464	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-473243	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-514869	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-556613	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	129656	-	AY009399 NM_030775	152526	+	BC001749 NM_032642	164716	+	NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B	1.012375	0.0	
chr17	49132251	49132431	reg1012438.p1	4.464	+	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-8113	-	AK313904 NM_001243877	-187003	-	TSC_hg19_v1_chr17_-_48943716 BC070493 BC098415 NM_001243885 NM_005749	-188645	-	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	65814	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	98570	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	98591	+	BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##BC070493|TOB1|10140|transducer of ERBB2, 1##BC098415|TOB1|10140|transducer of ERBB2, 1##NM_001243885|TOB1|10140|transducer of ERBB2, 1##NM_005749|TOB1|10140|transducer of ERBB2, 1##AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	0.0	0.0	
chr2	31556572	31556675	reg1010620.p2	4.464	+	AK294222 TSC_hg19_v1_chr2_+_31456985	-99640	+	AK316006 NM_014600 TSC_hg19_v1_chr2_+_31456952	-99702	+	AK296910 NM_001145122	-116229	-	TSC_hg19_v1_chr2_-_31637569 U39487 D11456 U06117	80948	-	TSC_hg19_v1_chr2_-_31637599 NM_000379	80988	-	EU832809 GQ129244 HQ258121 M74047 EF560740 AK316597 BC112252 BC113641 NM_000348	249380	-	AK294222|EHD3|30845|EH-domain containing 3##AK316006|EHD3|30845|EH-domain containing 3##NM_014600|EHD3|30845|EH-domain containing 3##AK296910|CAPN14|440854|calpain 14##NM_001145122|CAPN14|440854|calpain 14##U39487|XDH|7498|xanthine dehydrogenase##D11456|XDH|7498|xanthine dehydrogenase##U06117|XDH|7498|xanthine dehydrogenase##NM_000379|XDH|7498|xanthine dehydrogenase##EU832809|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##GQ129244|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##HQ258121|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##M74047|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##EF560740|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##AK316597|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC112252|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC113641|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000348|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	0.0	0.943332	CTCF.p2:9:0.943
chr2	54190081	54190191	reg1007876.p1	4.464	+	AF072693 BC110915 TSC_hg19_v1_chr2_-_54087105 AK314885 NM_001164165 NM_006794	-103018	-	NM_001127397 NM_001127398 NM_015701 TSC_hg19_v1_chr2_+_54014180 AY358717 AK001913 AY453410 BC013129 BC022228 AK315477 DQ894762	-175929	+	AK056069 NM_001201965 BC009569 AB209795 TSC_hg19_v1_chr2_-_54014091 AK000985 AK303133 AK001283 NM_016115 NM_145863	-176058	-	D38521 TSC_hg19_v1_chr2_-_54197945 AY894756 AY894754 AY894755 NM_014614	7745	-	TSC_hg19_v1_chr2_-_54198154 AB621805	7996	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	152458	+	AF072693|GPR75|10936|G protein-coupled receptor 75##BC110915|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##AK314885|GPR75|10936|G protein-coupled receptor 75##NM_001164165|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##NM_006794|GPR75|10936|G protein-coupled receptor 75##NM_001127397|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_001127398|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_015701|ERLEC1|27248|endoplasmic reticulum lectin 1##AY358717|ERLEC1|27248|endoplasmic reticulum lectin 1##AK001913|ERLEC1|27248|endoplasmic reticulum lectin 1##AY453410|ERLEC1|27248|endoplasmic reticulum lectin 1##BC013129|ERLEC1|27248|endoplasmic reticulum lectin 1##BC022228|ERLEC1|27248|endoplasmic reticulum lectin 1##AK315477|ERLEC1|27248|endoplasmic reticulum lectin 1##DQ894762|ERLEC1|27248|endoplasmic reticulum lectin 1##AK056069|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_001201965|ASB3|51130|ankyrin repeat and SOCS box containing 3##BC009569|ASB3|51130|ankyrin repeat and SOCS box containing 3##AB209795|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK000985|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK303133|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK001283|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_016115|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_145863|ASB3|51130|ankyrin repeat and SOCS box containing 3##D38521|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894756|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894754|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894755|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_014614|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type	0.995631	0.0	denovo_WM_7:18:0.456	denovo_WM_7:19:0.456
chr1	40283163	40283323	reg1012506.p2	4.463	+	TSC_hg19_v1_chr1_-_40254528 AY303955 NM_001720	-28717	-	TSC_hg19_v1_chr1_-_40254516 BC108678	-28728	-	BC023526 TSC_hg19_v1_chr1_-_40254233	-29054	-	AY702933 AY702934 AY702935 AY702936 AY702937 AY702938 AY702939 AY702940 AY702941 AY702942 AY702943 AY702944 AY702945 AY702946 AY702947 TSC_hg19_v1_chr1_-_40349138 AY052768 BC010741	65881	-	AK296453 AK307910 TSC_hg19_v1_chr1_-_40349167	65924	-	TSC_hg19_v1_chr1_-_40349179 AK223478 AK304759 AY303390 BC128155 BC128156 NM_017646 BC107569	65931	-	AY303955|BMP8B|656|bone morphogenetic protein 8b##NM_001720|BMP8B|656|bone morphogenetic protein 8b##BC108678|BMP8B|656|bone morphogenetic protein 8b##BC023526|BMP8B|656|bone morphogenetic protein 8b##AY702933|TRIT1|54802|tRNA isopentenyltransferase 1##AY702934|TRIT1|54802|tRNA isopentenyltransferase 1##AY702935|TRIT1|54802|tRNA isopentenyltransferase 1##AY702936|TRIT1|54802|tRNA isopentenyltransferase 1##AY702937|TRIT1|54802|tRNA isopentenyltransferase 1##AY702938|TRIT1|54802|tRNA isopentenyltransferase 1##AY702939|TRIT1|54802|tRNA isopentenyltransferase 1##AY702940|TRIT1|54802|tRNA isopentenyltransferase 1##AY702941|TRIT1|54802|tRNA isopentenyltransferase 1##AY702942|TRIT1|54802|tRNA isopentenyltransferase 1##AY702943|TRIT1|54802|tRNA isopentenyltransferase 1##AY702944|TRIT1|54802|tRNA isopentenyltransferase 1##AY702945|TRIT1|54802|tRNA isopentenyltransferase 1##AY702946|TRIT1|54802|tRNA isopentenyltransferase 1##AY702947|TRIT1|54802|tRNA isopentenyltransferase 1##AY052768|TRIT1|54802|tRNA isopentenyltransferase 1##BC010741|TRIT1|54802|tRNA isopentenyltransferase 1##AK296453|TRIT1|54802|tRNA isopentenyltransferase 1##AK307910|TRIT1|54802|tRNA isopentenyltransferase 1##AK223478|TRIT1|54802|tRNA isopentenyltransferase 1##AK304759|TRIT1|54802|tRNA isopentenyltransferase 1##AY303390|TRIT1|54802|tRNA isopentenyltransferase 1##BC128155|TRIT1|54802|tRNA isopentenyltransferase 1##BC128156|TRIT1|54802|tRNA isopentenyltransferase 1##NM_017646|TRIT1|54802|tRNA isopentenyltransferase 1##BC107569|TRIT1|54802|tRNA isopentenyltransferase 1	0.0	0.0	
chr6	32590574	32590749	reg1011406.p2	4.463	+	AF010142 M16954 M16955 M16956 M16957 M16958 M16959 M17377 M17378 U31770 U17380 U17379 D86415 X99896 M28584 M30180 AF490771 AJ297582 AJ297583 AJ297584 AJ297585 AJ297587 AJ302075 AY626551 AY770514 AY935719 AY961062 AY961063 AY961064 AY961065 AY961066 AY961067 AY961069 AY961070 AY961071 AY961072 AY961073 AY961074 AY961076 AY961077 AY961078 DQ002917 DQ090958 EU375850 GQ891551 HM067843 HM067844 HM067847 HM067848 HM067849 HM067850 HM067852 HM067853 HM067854 HM067855 HM067856 HM067857 HM067858 HM067859 HM067860 HM067861 HM067862 HM067863 HM627215 M11161 M30179 AB528619 CU678949 CU689080 L02545 X99895 U84892 AJ697892 AJ697893 U95989 BC171883 M11867 M20504 M28583 L76133 U65585 BC033827 M20430 AB062112 M26038 BC007920 TSC_hg19_v1_chr6_-_32557583 M33600 BC108922 X12544 AK291499 X03069 AK225683 AK225690 AK289463 AK290388 BC008403 BC031023 AK291987 NM_001243965 NM_002124 AK293020	-33133	-	AF017439 TSC_hg19_v1_chr6_-_32552033 U56640 AF436097 U83583 U83584 U95818 M21008 AM056024	-38588	-	U17380 M30181 AB463852 M20429 NM_002125 BC009234 AK314834 TSC_hg19_v1_chr6_-_32498065 M57648 M32578 M20503	-92644	-	AK130811 AK313975 NM_002122 TSC_hg19_v1_chr6_+_32605182 BC073977 BC051832 AB209628 X00452 L46875 L46876 L46877 L46878 L46879 L46880 L46881 U77589 M34996 M20431 L34082 L34083 L34084 L34085 L34090 L34094 M59802	14582	+	L34097 L34098 L34101 L34102 L34103 L34105 L34106 L34107 L40180 L42626 M17207 M22550 M59800 M59801 U66400 M17565 X00369 M35982 M57649 AF000447 U83585 AF291674 AY656681 M16996 X96420 M17563 M17564 AF522251 AB209580 TSC_hg19_v1_chr6_-_32634435 AK295476 AK295695 M60028 M20432 AK296613 AK316333 M25327 X03068 NM_001243961 NM_002123 M16276	43779	-	NM_020056 TSC_hg19_v1_chr6_+_32709167 L34094	118564	+	AF010142|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16954|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16955|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16956|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16957|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16959|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M17377|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M17378|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U31770|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##U17379|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##D86415|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28584|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30180|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF490771|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297582|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297587|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY626551|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY770514|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY935719|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961062|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961063|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961064|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961065|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961066|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961067|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961070|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961072|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961073|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961076|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961077|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961078|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ002917|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ090958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11161|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30179|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L02545|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##X99895|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ697892|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ697893|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11867|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20504|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L76133|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U65585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC033827|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20430|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AB062112|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M26038|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC007920|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M33600|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC108922|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291499|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##X03069|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK225683|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK225690|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK289463|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC008403|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC031023|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291987|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_001243965|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_002124|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK293020|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF017439|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##U56640|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AF436097|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U95818|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M21008|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30181|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M20429|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##NM_002125|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##BC009234|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AK314834|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M57648|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M32578|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M20503|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AK130811|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AK313975|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##NM_002122|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC073977|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC051832|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AB209628|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##X00452|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L46875|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##U77589|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M34996|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M20431|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34082|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34083|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34084|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34085|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34090|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M59802|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34097|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34098|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34101|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34102|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34103|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34105|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34106|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34107|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L40180|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L42626|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17207|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M22550|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59800|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59801|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U66400|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17565|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X00369|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M35982|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M57649|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF000447|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U83585|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF291674|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AY656681|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16996|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X96420|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17563|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17564|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AB209580|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295476|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295695|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M60028|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M20432|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK296613|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK316333|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M25327|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X03068|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_001243961|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_002123|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16276|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_020056|HLA-DQA2|3118|major histocompatibility complex, class II, DQ alpha 2##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1	0.0	0.0	
chr11	3122116	3122244	reg1011543.p2	4.462	+	BT009913 CU678270 DQ890773 AK308005 TSC_hg19_v1_chr11_-_3078625 AB208814 AF288206 AF288207 AK222614 AK296763 AK131221 AK096313 AK295371 AK298514 AK302644 BX647906 AK289432 BC002880 NM_001014437 NM_001194997 NM_001751 NM_139273	-43542	-	TSC_hg19_v1_chr11_-_3013610 NM_005969 U77456 AK312599	-108581	-	AK316324 TSC_hg19_v1_chr11_-_3013560	-108625	-	AK301003 TSC_hg19_v1_chr11_-_3147850	25663	-	TSC_hg19_v1_chr11_-_3186504 BC032646 BC039579 AF392453 AL136918	64309	-	TSC_hg19_v1_chr11_-_3186518 AK303205	64332	-	BT009913|CARS|833|cysteinyl-tRNA synthetase##DQ890773|CARS|833|cysteinyl-tRNA synthetase##AK308005|CARS|833|cysteinyl-tRNA synthetase##AB208814|CARS|833|cysteinyl-tRNA synthetase##AF288206|CARS|833|cysteinyl-tRNA synthetase##AF288207|CARS|833|cysteinyl-tRNA synthetase##AK222614|CARS|833|cysteinyl-tRNA synthetase##AK296763|CARS|833|cysteinyl-tRNA synthetase##AK131221|CARS|833|cysteinyl-tRNA synthetase##AK096313|CARS|833|cysteinyl-tRNA synthetase##AK295371|CARS|833|cysteinyl-tRNA synthetase##AK298514|CARS|833|cysteinyl-tRNA synthetase##AK302644|CARS|833|cysteinyl-tRNA synthetase##BX647906|CARS|833|cysteinyl-tRNA synthetase##AK289432|CARS|833|cysteinyl-tRNA synthetase##BC002880|CARS|833|cysteinyl-tRNA synthetase##NM_001014437|CARS|833|cysteinyl-tRNA synthetase##NM_001194997|CARS|833|cysteinyl-tRNA synthetase##NM_001751|CARS|833|cysteinyl-tRNA synthetase##NM_139273|CARS|833|cysteinyl-tRNA synthetase##NM_005969|NAP1L4|4676|nucleosome assembly protein 1-like 4##U77456|NAP1L4|4676|nucleosome assembly protein 1-like 4##AK312599|NAP1L4|4676|nucleosome assembly protein 1-like 4##AK316324|NAP1L4|4676|nucleosome assembly protein 1-like 4##AK301003|OSBPL5|114879|oxysterol binding protein-like 5##BC032646|OSBPL5|114879|oxysterol binding protein-like 5##BC039579|OSBPL5|114879|oxysterol binding protein-like 5##AF392453|OSBPL5|114879|oxysterol binding protein-like 5##AL136918|OSBPL5|114879|oxysterol binding protein-like 5##AK303205|OSBPL5|114879|oxysterol binding protein-like 5	0.993899	0.0	
chr17	74511706	74511886	reg1002215.p1	4.462	+	TSC_hg19_v1_chr17_-_74497506 BC016034 AK292135 NM_024599	-14337	-	AK303434 AY500247 AK292166 NM_001005498	-27898	-	NM_001088 U40347 AB593119 BC069434	-48139	+	AJ315162 AK098057 BC029798 AB057769 BC018822 NM_134268	21906	-	DQ390338 NM_001077620 BC146898 BC146904	24350	+	TSC_hg19_v1_chr17_+_74553850 AK123993 AK129904 AB073602 BC042949 AK055935 BX647993 BC100293	42083	+	BC016034|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292135|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_024599|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK303434|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AY500247|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292166|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001005498|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001088|AANAT|15|aralkylamine N-acetyltransferase##U40347|AANAT|15|aralkylamine N-acetyltransferase##AB593119|AANAT|15|aralkylamine N-acetyltransferase##BC069434|AANAT|15|aralkylamine N-acetyltransferase##AJ315162|CYGB|114757|cytoglobin##AK098057|CYGB|114757|cytoglobin##BC029798|CYGB|114757|cytoglobin##AB057769|CYGB|114757|cytoglobin##NM_134268|CYGB|114757|cytoglobin##DQ390338|PRCD|768206|progressive rod-cone degeneration##NM_001077620|PRCD|768206|progressive rod-cone degeneration##BC146898|PRCD|768206|progressive rod-cone degeneration##BC146904|PRCD|768206|progressive rod-cone degeneration##BC042949|LOC100507246|100507246|uncharacterized LOC100507246##BX647993|LOC100507246|100507246|uncharacterized LOC100507246##BC100293|LOC100507246|100507246|uncharacterized LOC100507246	0.0	0.0	
chr19	21204422	21204602	reg1007102.p2	4.462	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-1031	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-98426	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-245403	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	60491	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	120344	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	307681	-	AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708	0.0	0.0	
chr8	119178305	119178424	reg1009488.p2	4.462	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-54403	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-645322	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-645406	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	455761	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	455843	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	785856	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.0	0.0	
chr11	98886719	98886832	reg1011556.p1	4.461	+	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	-2763601	+	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	-2763733	-	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	-2810372	-	TSC_hg19_v1_chr11_+_98891687 AK308788 NM_001243270 NM_001243271 NM_014361 BC039255 BC144186	4974	+	AB013802 AB013803 NM_175566	540098	+	TSC_hg19_v1_chr11_+_100557961 NM_152432	1671353	+	AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AK308788|CNTN5|53942|contactin 5##NM_001243270|CNTN5|53942|contactin 5##NM_001243271|CNTN5|53942|contactin 5##NM_014361|CNTN5|53942|contactin 5##BC039255|CNTN5|53942|contactin 5##BC144186|CNTN5|53942|contactin 5##AB013802|CNTN5|53942|contactin 5##AB013803|CNTN5|53942|contactin 5##NM_175566|CNTN5|53942|contactin 5##NM_152432|ARHGAP42|143872|Rho GTPase activating protein 42	0.591727	0.995794	CTCF.p2:6:0.996	denovo_WM_7:49:0.268
chr15	62319419	62319509	reg1005376.p2	4.461	+	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	-797967	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	-798040	-	U04899 U04898 NM_002943 NM_134260	-1399779	-	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	33150	-	NM_207322 AF504646	39724	+	NM_001007595	138017	-	NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_207322|C2CD4A|145741|C2 calcium-dependent domain containing 4A##AF504646|C2CD4A|145741|C2 calcium-dependent domain containing 4A##NM_001007595|C2CD4B|388125|C2 calcium-dependent domain containing 4B	0.0	0.0	
chr16	11405647	11405797	reg1007346.p2	4.461	+	BT006746 AY651260 Y00443 AK311987 BC003673 NM_002761	-30580	-	BC042671 X07862 AK130957 AK131573 AK292447 AK307320 AK311798 BC005303 BC066338 NM_002762	-35402	-	NM_021247	-38271	-	TSC_hg19_v1_chr16_+_11439303 AK123764 BC031016 BC022427 NM_152308	33572	+	TSC_hg19_v1_chr16_+_11439315 BC013040	33596	+	BC096063 BC096064 BC096065 BC096066 BC101401 BC101969 BC101402 AB034747 NM_004862 U77396	274465	-	BT006746|PRM1|5619|protamine 1##AY651260|PRM1|5619|protamine 1##Y00443|PRM1|5619|protamine 1##AK311987|PRM1|5619|protamine 1##BC003673|PRM1|5619|protamine 1##NM_002761|PRM1|5619|protamine 1##BC042671|PRM2|5620|protamine 2##X07862|PRM2|5620|protamine 2##AK130957|PRM2|5620|protamine 2##AK131573|PRM2|5620|protamine 2##AK292447|PRM2|5620|protamine 2##AK311798|PRM2|5620|protamine 2##BC005303|PRM2|5620|protamine 2##BC066338|PRM2|5620|protamine 2##NM_002762|PRM2|5620|protamine 2##NM_021247|PRM3|58531|protamine 3##AK123764|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC031016|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC022427|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##NM_152308|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC013040|RMI2|116028|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)##BC096063|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096064|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096065|LITAF|9516|lipopolysaccharide-induced TNF factor##BC096066|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101401|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101969|LITAF|9516|lipopolysaccharide-induced TNF factor##BC101402|LITAF|9516|lipopolysaccharide-induced TNF factor##AB034747|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_004862|LITAF|9516|lipopolysaccharide-induced TNF factor##U77396|LITAF|9516|lipopolysaccharide-induced TNF factor	0.860782	0.0	denovo_WM_7:21:0.820
chr2	27053546	27053721	reg1012319.p2	4.461	+	TSC_hg19_v1_chr2_+_27008924 U14518 BC000881 BC002703 CU674442 BT007246	-44645	+	NM_001809 NM_001042426 TSC_hg19_v1_chr2_+_27008894	-44741	+	TSC_hg19_v1_chr2_+_26987155 AK000562 NM_017877 BC028081 BC035519 BX647807 AK075164 AK296996 BC011013 AK299598 AY358820 AK222929 BX648017 CU688388 CR457243	-66464	+	AF264015 NM_020134 TSC_hg19_v1_chr2_+_27070999 BC002874 NM_001253723 NM_001253724	17493	+	TSC_hg19_v1_chr2_+_27193529 AK312342 AB025186 NM_012326 BC011557 Y11174	139917	+	TSC_hg19_v1_chr2_+_27255814 NM_001083590 NM_017727 BC068479	202150	+	U14518|CENPA|1058|centromere protein A##BC000881|CENPA|1058|centromere protein A##BC002703|CENPA|1058|centromere protein A##BT007246|CENPA|1058|centromere protein A##NM_001809|CENPA|1058|centromere protein A##NM_001042426|CENPA|1058|centromere protein A##AK000562|C2orf18|54978|chromosome 2 open reading frame 18##NM_017877|C2orf18|54978|chromosome 2 open reading frame 18##BC028081|C2orf18|54978|chromosome 2 open reading frame 18##BC035519|C2orf18|54978|chromosome 2 open reading frame 18##BX647807|C2orf18|54978|chromosome 2 open reading frame 18##AK075164|C2orf18|54978|chromosome 2 open reading frame 18##AK296996|C2orf18|54978|chromosome 2 open reading frame 18##BC011013|CENPA|1058|centromere protein A##AK299598|C2orf18|54978|chromosome 2 open reading frame 18##AY358820|C2orf18|54978|chromosome 2 open reading frame 18##AK222929|C2orf18|54978|chromosome 2 open reading frame 18##BX648017|C2orf18|54978|chromosome 2 open reading frame 18##CR457243|C2orf18|54978|chromosome 2 open reading frame 18##AF264015|DPYSL5|56896|dihydropyrimidinase-like 5##NM_020134|DPYSL5|56896|dihydropyrimidinase-like 5##BC002874|DPYSL5|56896|dihydropyrimidinase-like 5##NM_001253723|DPYSL5|56896|dihydropyrimidinase-like 5##NM_001253724|DPYSL5|56896|dihydropyrimidinase-like 5##AK312342|MAPRE3|22924|microtubule-associated protein, RP/EB family, member 3##AB025186|MAPRE3|22924|microtubule-associated protein, RP/EB family, member 3##NM_012326|MAPRE3|22924|microtubule-associated protein, RP/EB family, member 3##BC011557|MAPRE3|22924|microtubule-associated protein, RP/EB family, member 3##Y11174|MAPRE3|22924|microtubule-associated protein, RP/EB family, member 3##NM_001083590|TMEM214|54867|transmembrane protein 214##NM_017727|TMEM214|54867|transmembrane protein 214##BC068479|TMEM214|54867|transmembrane protein 214	1.994596	0.0	denovo_WM_7:5:0.470	denovo_WM_7:-24:0.304	denovo_WM_7:-25:0.304	denovo_WM_7:-26:0.304
chr3	48594711	48594847	reg1008215.p1	4.461	+	DQ891635 DQ894825 BC010269 NM_004567 AF108765 D49818 TSC_hg19_v1_chr3_-_48594237 AK299097 AK312623 AY707863 AY714243 AY756062 AY756063 AY756064	-514	-	AK124652 TSC_hg19_v1_chr3_-_48541588 AB527510 AK075441 AF520698 NM_016479	-53205	-	TSC_hg19_v1_chr3_-_48514495 AB097007 BC020279 AL117413 AK310083 AL832568 AF151051 BC001463 AK027728 AK298799	-80248	-	TSC_hg19_v1_chr3_-_48598563 AK298732	3778	-	BC002647 BC022096 NM_033199 TSC_hg19_v1_chr3_-_48601218	6431	-	NM_000094 L02870 TSC_hg19_v1_chr3_-_48632733	37915	-	DQ891635|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##DQ894825|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##BC010269|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##NM_004567|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AF108765|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##D49818|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AK299097|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AK312623|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY707863|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY714243|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY756062|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY756063|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AY756064|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##AK124652|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AK075441|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AF520698|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##NM_016479|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AB097007|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##BC020279|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AL117413|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AL832568|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AF151051|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##BC001463|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AK298799|SHISA5|51246|shisa homolog 5 (Xenopus laevis)##AK298732|PFKFB4|5210|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4##BC002647|UCN2|90226|urocortin 2##BC022096|UCN2|90226|urocortin 2##NM_033199|UCN2|90226|urocortin 2##NM_000094|COL7A1|1294|collagen, type VII, alpha 1##L02870|COL7A1|1294|collagen, type VII, alpha 1	0.0	0.0	
chr3	5048470	5048599	reg1011036.p1	4.461	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-27180	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	-27353	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	-27418	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	115421	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	115557	+	TSC_hg19_v1_chr3_+_5229344 AK298511	180793	+	AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	0.0	0.0	
chr5	124164445	124164545	reg1014708.p1	4.461	+	BC131507 AB033107 BC151226 NM_020747	-83707	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1316613	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1405351	-	NM_001146319 AK316288 AK300154	1531319	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1594348	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1594692	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.833025	0.0	denovo_WM_7:-14:0.475	denovo_WM_7:-15:0.313
chr6	16541231	16541373	reg1011397.p2	4.461	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-302451	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-397992	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-411865	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	220395	-	NM_001190766	561186	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	740552	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr14	72981057	72981124	reg1012141.p2	4.460	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-581224	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-581937	+	AK294895 NM_001204423	-582274	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	379718	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	412045	+	AK098542 AF311602 NM_178441	472567	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.0	0.0	
chr5	133881010	133881143	reg1011700.p1	4.460	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-19271	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-19713	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-38786	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	87421	-	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	103355	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	193234	+	D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand	1.08268	0.0	denovo_WM_7:30:0.788
chr6	64810811	64810943	reg1012071.p1	4.460	+	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-454435	+	TSC_hg19_v1_chr6_+_64346027 BX648268 AK290491	-464860	+	TSC_hg19_v1_chr6_+_64345729 AK315868 AK298580	-465054	+	AY358133 NM_198283 AK310478	1478828	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	1606216	-	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	3788151	-	AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##BX648268|PHF3|23469|PHD finger protein 3##AK290491|PHF3|23469|PHD finger protein 3##AK315868|PHF3|23469|PHD finger protein 3##AK298580|PHF3|23469|PHD finger protein 3##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3	0.044988	0.0	
chr16	22552342	22552478	reg1011275.p2	4.459	+	NM_001135865 BC036263 AK296338 CU690320	-27428	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	-166615	-	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	-243662	+	TSC_hg19_v1_chr16_+_22825482 AY359095 AK313463	273092	+	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	273441	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	608139	-	NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene##DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AY359095|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK313463|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31	1.714281	0.0	denovo_WM_7:-4:0.477	denovo_WM_7:12:0.295
chr16	71563148	71563240	reg1001554.p1	4.459	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-3101	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-39979	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-67006	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	47778	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	96903	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	185506	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	0.0	0.0	
chr3	105546124	105546224	reg1013715.p2	4.459	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-125120	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-460352	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-460594	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	41633	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1413305	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1413418	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.0	0.0	
chr3	5182157	5182287	reg1011977.p2	4.459	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	-18131	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	-18267	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-160868	+	TSC_hg19_v1_chr3_+_5229344 AK298511	47105	+	BC019088 NM_014674 TSC_hg19_v1_chr3_+_5229369	47141	+	TSC_hg19_v1_chr3_+_5229430 D86967	47211	+	AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##BC019088|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##NM_014674|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##D86967|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	0.956182	0.0	denovo_WM_7:26:0.839
chr4	42657432	42657558	reg1012725.p1	4.459	+	NM_001080505	-257640	+	AB126828 AB126829 NM_001159547 NM_207406	-502601	-	TSC_hg19_v1_chr4_-_42154719 AK125953 AB463533	-502839	-	BC109317 AB013452 AF067820 BC109318 AB587324 TSC_hg19_v1_chr4_-_42659111 AB209687 BC020943 AK295616 NM_001105529 NM_006095	1593	-	AB528853 NM_001080476	237786	+	AK298831 HQ258617 TSC_hg19_v1_chr4_-_44450559 BC132743 BC136793	1793058	-	NM_001080505|SHISA3|152573|shisa homolog 3 (Xenopus laevis)##AB126828|BEND4|389206|BEN domain containing 4##AB126829|BEND4|389206|BEN domain containing 4##NM_001159547|BEND4|389206|BEN domain containing 4##NM_207406|BEND4|389206|BEN domain containing 4##AK125953|BEND4|389206|BEN domain containing 4##BC109317|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB013452|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AF067820|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC109318|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB209687|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC020943|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001105529|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_006095|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001080476|GRXCR1|389207|glutaredoxin, cysteine rich 1##AK298831|KCTD8|386617|potassium channel tetramerisation domain containing 8##HQ258617|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC132743|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC136793|KCTD8|386617|potassium channel tetramerisation domain containing 8	0.0	0.0	
chr7	47709666	47709846	reg1010144.p1	4.459	+	AK126096 NM_001123065	-14915	+	TSC_hg19_v1_chr7_-_47622186 AB208995	-87570	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	-87973	-	AK024728 NM_025031 BC113679 BC113681 AK092057 AX747337	125182	+	AB061683 NM_138295	278297	-	BT019481 BT019482 CR536552 Y16893 AB463759 BC007013 TSC_hg19_v1_chr7_-_48019149 AK294117 AK290459 AF076844 AF110393	309396	-	AK126096|C7orf65|401335|chromosome 7 open reading frame 65##NM_001123065|C7orf65|401335|chromosome 7 open reading frame 65##AB208995|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3##AK024728|C7orf69|80099|chromosome 7 open reading frame 69##NM_025031|C7orf69|80099|chromosome 7 open reading frame 69##BC113679|C7orf69|80099|chromosome 7 open reading frame 69##BC113681|C7orf69|80099|chromosome 7 open reading frame 69##AK092057|PKD1L1|168507|polycystic kidney disease 1 like 1##AB061683|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_138295|PKD1L1|168507|polycystic kidney disease 1 like 1##BT019481|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BT019482|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##CR536552|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##Y16893|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007013|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK294117|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK290459|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF076844|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF110393|HUS1|3364|HUS1 checkpoint homolog (S. pombe)	0.993913	0.0	denovo_WM_7:-69:0.981
chr15	54712037	54712150	reg1012834.p1	4.458	+	NM_001080534	-406993	+	AK096055 BX537884 NM_182758	-660246	-	AB463985 BC140830 NM_004498 U96173 TSC_hg19_v1_chr15_-_53082301	-1629899	-	TSC_hg19_v1_chr15_-_55489117 CR457179 AB463507 CU688538 AF060926 BC012913 BC026267 BC093067 BC016777 BC028672 AK055713 BC008422	776999	-	BC008449 BC014576 AK315431 TSC_hg19_v1_chr15_-_55489135 BC005344 BC009593 BC009604 BC016312 BC016331 BC026266 BC016725 BC008499 BC035995 BC008409 AF165521 AF201949 AF212226 NM_016304	777086	-	AF125393 NM_183234 U57094 U38654 NM_004580	850444	-	NM_001080534|UNC13C|440279|unc-13 homolog C (C. elegans)##AK096055|WDR72|256764|WD repeat domain 72##BX537884|WDR72|256764|WD repeat domain 72##NM_182758|WDR72|256764|WD repeat domain 72##BC140830|ONECUT1|3175|one cut homeobox 1##NM_004498|ONECUT1|3175|one cut homeobox 1##U96173|ONECUT1|3175|one cut homeobox 1##CR457179|RSL24D1|51187|ribosomal L24 domain containing 1##AF060926|RSL24D1|51187|ribosomal L24 domain containing 1##BC012913|RSL24D1|51187|ribosomal L24 domain containing 1##BC026267|RSL24D1|51187|ribosomal L24 domain containing 1##BC093067|RSL24D1|51187|ribosomal L24 domain containing 1##BC016777|RSL24D1|51187|ribosomal L24 domain containing 1##BC028672|RSL24D1|51187|ribosomal L24 domain containing 1##AK055713|RSL24D1|51187|ribosomal L24 domain containing 1##BC008422|RSL24D1|51187|ribosomal L24 domain containing 1##BC008449|RSL24D1|51187|ribosomal L24 domain containing 1##BC014576|RSL24D1|51187|ribosomal L24 domain containing 1##AK315431|RSL24D1|51187|ribosomal L24 domain containing 1##BC005344|RSL24D1|51187|ribosomal L24 domain containing 1##BC009593|RSL24D1|51187|ribosomal L24 domain containing 1##BC009604|RSL24D1|51187|ribosomal L24 domain containing 1##BC016312|RSL24D1|51187|ribosomal L24 domain containing 1##BC016331|RSL24D1|51187|ribosomal L24 domain containing 1##BC026266|RSL24D1|51187|ribosomal L24 domain containing 1##BC016725|RSL24D1|51187|ribosomal L24 domain containing 1##BC008499|RSL24D1|51187|ribosomal L24 domain containing 1##BC035995|RSL24D1|51187|ribosomal L24 domain containing 1##BC008409|RSL24D1|51187|ribosomal L24 domain containing 1##AF165521|RSL24D1|51187|ribosomal L24 domain containing 1##AF201949|RSL24D1|51187|ribosomal L24 domain containing 1##AF212226|RSL24D1|51187|ribosomal L24 domain containing 1##NM_016304|RSL24D1|51187|ribosomal L24 domain containing 1##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family	0.151156	0.0	
chr5	139558100	139558202	reg1006808.p2	4.458	+	TSC_hg19_v1_chr5_+_139554722 BC023982 BC013643 AK225992 AK311640 AK312045 AJ245877	-3380	+	TSC_hg19_v1_chr5_+_139554672 NM_032412	-3497	+	BC041380 NM_001007189	-52632	+	AB464063 TSC_hg19_v1_chr5_-_139682672	124513	-	AK315353 TSC_hg19_v1_chr5_-_139682676	124524	-	TSC_hg19_v1_chr5_-_139682680 BC011869 BC003620 BC006202 AK223394 NM_002622	124533	-	BC023982|C5orf32|84418|chromosome 5 open reading frame 32##BC013643|C5orf32|84418|chromosome 5 open reading frame 32##AK225992|C5orf32|84418|chromosome 5 open reading frame 32##AK312045|C5orf32|84418|chromosome 5 open reading frame 32##AJ245877|C5orf32|84418|chromosome 5 open reading frame 32##NM_032412|C5orf32|84418|chromosome 5 open reading frame 32##BC041380|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_001007189|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##AK315353|PFDN1|5201|prefoldin subunit 1##BC011869|PFDN1|5201|prefoldin subunit 1##BC003620|PFDN1|5201|prefoldin subunit 1##BC006202|PFDN1|5201|prefoldin subunit 1##AK223394|PFDN1|5201|prefoldin subunit 1##NM_002622|PFDN1|5201|prefoldin subunit 1	0.977123	0.0	denovo_WM_7:45:0.708
chr8	137110414	137110536	reg1008210.p2	4.458	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-640274	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-640817	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1385201	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	2398631	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2815769	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3604807	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	1.64848	0.0	denovo_WM_7:-35:0.836
chr11	102297742	102297860	reg1011829.p1	4.457	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-79773	+	TSC_hg19_v1_chr11_+_102217944 AK303197	-79872	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	-109599	+	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	25812	-	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	103658	-	AB527354 NM_004771 Y12779	198254	-	BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20	0.95219	0.0	denovo_WM_7:3:0.428	denovo_WM_7:5:0.355
chr5	157288858	157288933	reg1001933.p3	4.457	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-2805	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-104515	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-118155	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	1237562	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	1237847	-	AK304228 NM_001199382	1345753	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.995796	0.0	denovo_WM_7:15:0.441	denovo_WM_7:16:0.441
chr5	72824055	72824218	reg1012252.p1	4.457	+	TSC_hg19_v1_chr5_+_72794276 BC061913 AB062126 BC008062 X74070 X53280 AB463433	-29754	+	TSC_hg19_v1_chr5_+_72794266 NM_001037637 NM_001207 AK310919 AK225964 AK291125	-29877	+	NM_004472 U59832 TSC_hg19_v1_chr5_-_72744463	-79727	-	TSC_hg19_v1_chr5_-_72861256 AK022876	37096	-	BC012917 TSC_hg19_v1_chr5_-_72861465 AF251051 NM_023039	37323	-	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	37446	+	BC061913|BTF3|689|basic transcription factor 3##AB062126|BTF3|689|basic transcription factor 3##BC008062|BTF3|689|basic transcription factor 3##X74070|BTF3|689|basic transcription factor 3##X53280|BTF3|689|basic transcription factor 3##NM_001037637|BTF3|689|basic transcription factor 3##NM_001207|BTF3|689|basic transcription factor 3##AK310919|BTF3|689|basic transcription factor 3##AK225964|BTF3|689|basic transcription factor 3##AK291125|BTF3|689|basic transcription factor 3##NM_004472|FOXD1|2297|forkhead box D1##U59832|FOXD1|2297|forkhead box D1##AK022876|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##BC012917|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AF251051|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##NM_023039|ANKRA2|57763|ankyrin repeat, family A (RFXANK-like), 2##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)	0.992117	0.0	denovo_WM_7:-25:0.419	denovo_WM_7:-26:0.419
chr7	127034731	127034866	reg1010271.p2	4.457	+	TSC_hg19_v1_chr7_-_127032759 AF218032 NM_176814 AK309674 BC047641	-2040	-	TSC_hg19_v1_chr7_-_126893165 AK290197	-141646	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	-142433	-	AF525417 AK315472 BC078665 TSC_hg19_v1_chr7_-_127225651	190741	-	BC014100 NM_024523 TSC_hg19_v1_chr7_-_127225654	190874	-	NM_001662 TSC_hg19_v1_chr7_+_127228469 AK307297 AK308548 BC033104 M57567 AK297026 AK312107 BC003043 AB528679 AF493884 BT007087	193680	+	AF218032|ZNF800|168850|zinc finger protein 800##NM_176814|ZNF800|168850|zinc finger protein 800##AK309674|ZNF800|168850|zinc finger protein 800##BC047641|ZNF800|168850|zinc finger protein 800##AK290197|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AF525417|GCC1|79571|GRIP and coiled-coil domain containing 1##AK315472|GCC1|79571|GRIP and coiled-coil domain containing 1##BC078665|GCC1|79571|GRIP and coiled-coil domain containing 1##BC014100|GCC1|79571|GRIP and coiled-coil domain containing 1##NM_024523|GCC1|79571|GRIP and coiled-coil domain containing 1##NM_001662|ARF5|381|ADP-ribosylation factor 5##AK307297|ARF5|381|ADP-ribosylation factor 5##AK308548|ARF5|381|ADP-ribosylation factor 5##BC033104|ARF5|381|ADP-ribosylation factor 5##M57567|ARF5|381|ADP-ribosylation factor 5##AK297026|ARF5|381|ADP-ribosylation factor 5##AK312107|ARF5|381|ADP-ribosylation factor 5##BC003043|ARF5|381|ADP-ribosylation factor 5##AF493884|ARF5|381|ADP-ribosylation factor 5##BT007087|ARF5|381|ADP-ribosylation factor 5	1.987228	0.0	denovo_WM_7:-19:0.602	denovo_WM_7:-20:0.324	denovo_WM_7:-34:0.285	denovo_WM_7:-35:0.563
chr9	42254869	42254974	reg1003638.p3	4.457	+	BC019880 TSC_hg19_v1_chr9_-_41955050 BC040170 BC000869 BC015151 AK092305 AX747468 AK095690 BC027338	-300007	-	BC040528 NM_001113541 NM_015667	-754243	+	BC040528 NM_001113541 NM_015667 NM_001242613	-927542	-	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	113437	+	NM_001099279 NM_199244	462312	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	878566	-	BC019880|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC015151|MGC21881|389741|uncharacterized locus MGC21881##AK092305|MGC21881|389741|uncharacterized locus MGC21881##AK095690|MGC21881|389741|uncharacterized locus MGC21881##BC027338|MGC21881|389741|uncharacterized locus MGC21881##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001242613|FAM75A4|642629|family with sequence similarity 75, member A4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2	0.995085	0.0	
chrX	100641186	100641318	reg1010842.p1	4.457	+	BC109079 BC109080 TSC_hg19_v1_chrX_-_100641191 X58957 AK057105 AK225577 AK314382 NM_000061	-75	-	NM_004085	-37296	-	TSC_hg19_v1_chrX_-_100603719 U66035 BC070284 AK312117 BC005236 BC006994 BC015093 NM_001145951	-37541	-	NM_001199972 NM_001199973 NM_001199974 NM_021029 TSC_hg19_v1_chrX_+_100646002 BC062219 BC001781 AK096711 BC031015 BC070204 AY927233	4693	+	TSC_hg19_v1_chrX_-_100662901 D00039 BT006864 CU678122 X16889 DQ890721 DQ893899 BC002689	21593	-	TSC_hg19_v1_chrX_-_100662914 AK222627 AK297148 X05790 AK291095 NM_000169	21703	-	BC109079|BTK|695|Bruton agammaglobulinemia tyrosine kinase##BC109080|BTK|695|Bruton agammaglobulinemia tyrosine kinase##X58957|BTK|695|Bruton agammaglobulinemia tyrosine kinase##AK057105|BTK|695|Bruton agammaglobulinemia tyrosine kinase##AK225577|BTK|695|Bruton agammaglobulinemia tyrosine kinase##AK314382|BTK|695|Bruton agammaglobulinemia tyrosine kinase##NM_000061|BTK|695|Bruton agammaglobulinemia tyrosine kinase##NM_004085|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##U66035|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##BC070284|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##AK312117|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##BC005236|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##BC006994|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##BC015093|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##NM_001145951|TIMM8A|1678|translocase of inner mitochondrial membrane 8 homolog A (yeast)##NM_001199972|RPL36A|6173|ribosomal protein L36a##NM_001199973|RPL36A-HNRNPH2|100529097|RPL36A-HNRNPH2 readthrough##NM_001199974|RPL36A-HNRNPH2|100529097|RPL36A-HNRNPH2 readthrough##NM_021029|RPL36A|6173|ribosomal protein L36a##BC062219|RPL36A|6173|ribosomal protein L36a##BC001781|RPL36A|6173|ribosomal protein L36a##AK096711|RPL36A|6173|ribosomal protein L36a##BC031015|RPL36A|6173|ribosomal protein L36a##BC070204|RPL36A|6173|ribosomal protein L36a##AY927233|RPL36A|6173|ribosomal protein L36a##D00039|GLA|2717|galactosidase, alpha##BT006864|GLA|2717|galactosidase, alpha##X16889|GLA|2717|galactosidase, alpha##DQ890721|GLA|2717|galactosidase, alpha##DQ893899|GLA|2717|galactosidase, alpha##BC002689|GLA|2717|galactosidase, alpha##AK222627|GLA|2717|galactosidase, alpha##AK297148|GLA|2717|galactosidase, alpha##X05790|GLA|2717|galactosidase, alpha##AK291095|GLA|2717|galactosidase, alpha##NM_000169|GLA|2717|galactosidase, alpha	0.136345	0.0	
chr10	22935399	22935546	reg1011884.p1	4.456	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-209473	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-301016	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-325307	+	AK294817 TSC_hg19_v1_chr10_-_23003038	67565	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	68018	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	281509	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	0.696285	0.0	denovo_WM_7:23:0.605
chr12	117296096	117296182	reg1000113.p2	4.456	+	TSC_hg19_v1_chr12_+_117176119 NM_001109903 NM_032814 BC011878 AK027533	-120020	+	TSC_hg19_v1_chr12_-_117175868 AK222983 AK298857	-120270	-	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	-120401	-	NM_003806 U76376	23092	-	TSC_hg19_v1_chr12_+_117348781 BC037296 NM_012174 NM_153348 AK289621 AF176707 BC075823	52647	+	DQ894644 TSC_hg19_v1_chr12_-_117537222 AF443207 BC015221 NM_001168325 NM_017899 AK000614	241124	-	NM_001109903|RNFT2|84900|ring finger protein, transmembrane 2##NM_032814|RNFT2|84900|ring finger protein, transmembrane 2##BC011878|RNFT2|84900|ring finger protein, transmembrane 2##AK027533|RNFT2|84900|ring finger protein, transmembrane 2##AK222983|C12orf49|79794|chromosome 12 open reading frame 49##AK298857|C12orf49|79794|chromosome 12 open reading frame 49##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49##NM_003806|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##U76376|HRK|8739|harakiri, BCL2 interacting protein (contains only BH3 domain)##BC037296|FBXW8|26259|F-box and WD repeat domain containing 8##NM_012174|FBXW8|26259|F-box and WD repeat domain containing 8##NM_153348|FBXW8|26259|F-box and WD repeat domain containing 8##AK289621|FBXW8|26259|F-box and WD repeat domain containing 8##AF176707|FBXW8|26259|F-box and WD repeat domain containing 8##DQ894644|TESC|54997|tescalcin##AF443207|TESC|54997|tescalcin##BC015221|TESC|54997|tescalcin##NM_001168325|TESC|54997|tescalcin##NM_017899|TESC|54997|tescalcin##AK000614|TESC|54997|tescalcin	0.0	0.0	
chr12	40502255	40502382	reg1012752.p2	4.456	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-2446	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-2629	-	BC038754 NM_001031748 BC048120 AK097445	-482323	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	116541	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	583964	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	1079890	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.990476	0.0	denovo_WM_7:10:0.351	denovo_WM_7:11:0.492
chr1	243888443	243888572	reg1013871.p1	4.456	+	TSC_hg19_v1_chr1_+_243419405 AK297105 AF250731	-469072	+	BC032454 TSC_hg19_v1_chr1_+_243419371 AK299249	-469136	+	TSC_hg19_v1_chr1_+_243419357 AK299212	-469152	+	AF135794 AB463341 AM392791 AM392849 AJ245709 AF124141 AK308052 BC020479 AF085234 AY005799 BC121154 NM_005465 NM_181690	118020	-	AL117525 NM_001206729	118378	-	TSC_hg19_v1_chr1_+_244214553 NM_205768	326049	+	AK297105|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF250731|SDCCAG8|10806|serologically defined colon cancer antigen 8##BC032454|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299249|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299212|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF135794|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392791|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392849|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AJ245709|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF124141|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK308052|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC020479|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF085234|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AY005799|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC121154|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_005465|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_181690|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_205768|ZNF238|10472|zinc finger protein 238	0.982044	0.0	denovo_WM_7:0:0.659
chr14	68128154	68128307	reg1010510.p1	4.456	+	U75667 AK312484 TSC_hg19_v1_chr14_+_68086666 D86724 BC001350 U82256 AB587380 CR536550	-41556	+	AY074489 BC008464 TSC_hg19_v1_chr14_+_68086636	-41594	+	TSC_hg19_v1_chr14_+_68086582 BC029050 NM_001172	-41641	+	BT019348 BT019960 CR456757 CR542095 CU678400 AF035824 TSC_hg19_v1_chr14_-_68141319 AK310839	13035	-	TSC_hg19_v1_chr14_-_68141331 AK291689 AK316572 BC003142 BC001598 AF060902 NM_006370	13234	-	CR457180 CU680026 CU691474 CU693194 BC011727 BC000112 TSC_hg19_v1_chr14_-_68162477 AK289427 BC026274 DQ426886 AK057195 AK293355 BC051291 AF151840 AF167438 AF395068 AK307500 AK314465 BC037302 AK074749 NM_001252650 NM_016026	34234	-	U75667|ARG2|384|arginase, type II##AK312484|ARG2|384|arginase, type II##D86724|ARG2|384|arginase, type II##BC001350|ARG2|384|arginase, type II##U82256|ARG2|384|arginase, type II##CR536550|ARG2|384|arginase, type II##AY074489|ARG2|384|arginase, type II##BC008464|ARG2|384|arginase, type II##BC029050|ARG2|384|arginase, type II##NM_001172|ARG2|384|arginase, type II##BT019348|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##BT019960|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##CR456757|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##CR542095|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AF035824|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AK310839|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AK291689|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AK316572|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##BC003142|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##AF060902|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##NM_006370|VTI1B|10490|vesicle transport through interaction with t-SNAREs homolog 1B (yeast)##CR457180|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC011727|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC000112|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK289427|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC026274|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##DQ426886|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK057195|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK293355|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC051291|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF151840|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF167438|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AF395068|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK307500|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK314465|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##BC037302|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##AK074749|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_001252650|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)##NM_016026|RDH11|51109|retinol dehydrogenase 11 (all-trans/9-cis/11-cis)	0.998839	0.0	
chr2	113017152	113017268	reg1014539.p1	4.456	+	BC032001 AK315329 AF334161 NM_032494	-4578	-	TSC_hg19_v1_chr2_+_112896040 BC126986 BC126987	-121111	+	TSC_hg19_v1_chr2_+_112895958 AK094759 NM_001128165 NM_153214 BC035784	-121221	+	TSC_hg19_v1_chr2_+_113033173 NM_198581	15951	+	TSC_hg19_v1_chr2_+_113033193 AK131416	15992	+	NM_005054 U64675 NM_001164463	173953	-	BC032001|ZC3H8|84524|zinc finger CCCH-type containing 8##AK315329|ZC3H8|84524|zinc finger CCCH-type containing 8##AF334161|ZC3H8|84524|zinc finger CCCH-type containing 8##NM_032494|ZC3H8|84524|zinc finger CCCH-type containing 8##BC126986|FBLN7|129804|fibulin 7##BC126987|FBLN7|129804|fibulin 7##AK094759|FBLN7|129804|fibulin 7##NM_001128165|FBLN7|129804|fibulin 7##NM_153214|FBLN7|129804|fibulin 7##BC035784|FBLN7|129804|fibulin 7##NM_198581|ZC3H6|376940|zinc finger CCCH-type containing 6##AK131416|ZC3H6|376940|zinc finger CCCH-type containing 6##NM_005054|RGPD5|84220|RANBP2-like and GRIP domain containing 5##U64675|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001164463|RGPD8|727851|RANBP2-like and GRIP domain containing 8	0.0	0.586201	CTCF.p2:-15:0.586
chr2	9661141	9661242	reg1010152.p1	4.456	+	TSC_hg19_v1_chr2_+_9614657 BC019061 BC067865 BC111025 NM_001039613 BC059410 AK291984 BC039709 AK092982 AK297648	-46522	+	AK298918 TSC_hg19_v1_chr2_+_9563789 BC011654 AK223487 BC020211 NM_016207 AF171877 EU176402 BC014106 BC043432	-97237	+	TSC_hg19_v1_chr2_+_9563779 BC030988	-97411	+	AY422721 TSC_hg19_v1_chr2_-_9695771 BC136783	34584	-	TSC_hg19_v1_chr2_-_9695874 U69611 U69612	34659	-	TSC_hg19_v1_chr2_-_9695883 AK289829	34692	-	BC019061|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC067865|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC111025|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##NM_001039613|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC059410|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK291984|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##BC039709|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK092982|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK297648|IAH1|285148|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)##AK298918|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC011654|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##AK223487|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC020211|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##NM_016207|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##AF171877|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##EU176402|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC014106|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC043432|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##BC030988|CPSF3|51692|cleavage and polyadenylation specific factor 3, 73kDa##AY422721|ADAM17|6868|ADAM metallopeptidase domain 17##BC136783|ADAM17|6868|ADAM metallopeptidase domain 17##U69611|ADAM17|6868|ADAM metallopeptidase domain 17##U69612|ADAM17|6868|ADAM metallopeptidase domain 17##AK289829|ADAM17|6868|ADAM metallopeptidase domain 17	0.998831	0.0	
chr10	88644073	88644165	reg1014954.p1	4.455	+	TSC_hg19_v1_chr10_+_88516526 NM_004329 BC028383 AK291764 Z22535	-127632	+	AK304760 TSC_hg19_v1_chr10_+_88428267 AK300692 AK297871 NM_001080116 AJ133766 BC010929 NM_001080114 NM_001080115 NM_001171611 NM_007078 AB014513 AF276807 AF276808 AF276809 AJ133767 AJ133768	-215764	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	-215933	+	TSC_hg19_v1_chr10_-_88717330 BC072456 AK304727 AK023527 AK293822 BC094744 BC064415 AK308401 NM_024756	73252	-	NM_003087 AK223367 AK311652 BC014098 AK312141 AF017256 AF411524 EU019993 AF010126 DQ892334 DQ892505 DQ895719 EU176715 AB464279 CR541788 CR541790	74251	+	NM_006829 TSC_hg19_v1_chr10_+_88728238 AK304688 AK312031 BC004471 D45370	84109	+	NM_004329|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC028383|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK291764|BMPR1A|657|bone morphogenetic protein receptor, type IA##Z22535|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK304760|LDB3|11155|LIM domain binding 3##AK300692|LDB3|11155|LIM domain binding 3##AK297871|LDB3|11155|LIM domain binding 3##NM_001080116|LDB3|11155|LIM domain binding 3##AJ133766|LDB3|11155|LIM domain binding 3##BC010929|LDB3|11155|LIM domain binding 3##NM_001080114|LDB3|11155|LIM domain binding 3##NM_001080115|LDB3|11155|LIM domain binding 3##NM_001171611|LDB3|11155|LIM domain binding 3##NM_007078|LDB3|11155|LIM domain binding 3##AB014513|LDB3|11155|LIM domain binding 3##AF276807|LDB3|11155|LIM domain binding 3##AF276808|LDB3|11155|LIM domain binding 3##AF276809|LDB3|11155|LIM domain binding 3##AJ133767|LDB3|11155|LIM domain binding 3##AJ133768|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3##BC072456|MMRN2|79812|multimerin 2##AK304727|MMRN2|79812|multimerin 2##AK023527|MMRN2|79812|multimerin 2##AK293822|MMRN2|79812|multimerin 2##BC094744|MMRN2|79812|multimerin 2##BC064415|MMRN2|79812|multimerin 2##AK308401|MMRN2|79812|multimerin 2##NM_024756|MMRN2|79812|multimerin 2##NM_003087|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK223367|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##BC014098|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK312141|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF017256|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF411524|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU019993|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF010126|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892334|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892505|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ895719|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU176715|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541788|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541790|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##NM_006829|C10orf116|10974|chromosome 10 open reading frame 116##AK312031|C10orf116|10974|chromosome 10 open reading frame 116##BC004471|C10orf116|10974|chromosome 10 open reading frame 116##D45370|C10orf116|10974|chromosome 10 open reading frame 116	1.993064	0.0	denovo_WM_7:40:0.221	denovo_WM_7:62:0.221
chr1	24049222	24049327	reg1011216.p1	4.455	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-30975	+	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	-30994	+	NM_002167 X69111	-162990	-	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	20630	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	20709	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	55495	-	BC018970|RPL11|6135|ribosomal protein L11##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AL049675|LOC100506963|100506963|uncharacterized LOC100506963	0.998459	0.0	denovo_WM_7:-101:0.310	denovo_WM_7:-102:0.310	denovo_WM_7:-103:0.310
chr17	30548079	30548185	reg1002541.p1	4.455	+	TSC_hg19_v1_chr17_+_30469588 BC092401 BC068463 AY094972 BC125104 BC125105 AL136929 BC029029 AK294407 AB527368 AM393207 BC146694 AJ517412	-78493	+	TSC_hg19_v1_chr17_+_30469544 BC110895	-78587	+	TSC_hg19_v1_chr17_+_30469520 BC041114	-78610	+	AJ313480 BC100975 BC100976 BC100978 NM_138328 BC100977	45062	+	TSC_hg19_v1_chr17_-_30669193 AF052093 CU691078 BC054035 BC047325 BC026017 BC035715 AF305686 NM_022344	121075	-	TSC_hg19_v1_chr17_+_30677175 BC002372 NM_001032293 NM_001098507 NM_003457	129024	+	BC092401|RHOT1|55288|ras homolog gene family, member T1##BC068463|RHOT1|55288|ras homolog gene family, member T1##AY094972|RHOT1|55288|ras homolog gene family, member T1##BC125104|RHOT1|55288|ras homolog gene family, member T1##BC125105|RHOT1|55288|ras homolog gene family, member T1##AL136929|RHOT1|55288|ras homolog gene family, member T1##BC029029|RHOT1|55288|ras homolog gene family, member T1##AK294407|RHOT1|55288|ras homolog gene family, member T1##AM393207|RHOT1|55288|ras homolog gene family, member T1##BC146694|RHOT1|55288|ras homolog gene family, member T1##AJ517412|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1##BC041114|RHOT1|55288|ras homolog gene family, member T1##AJ313480|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100975|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100976|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100978|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##NM_138328|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##BC100977|RHBDL3|162494|rhomboid, veinlet-like 3 (Drosophila)##AF052093|C17orf75|64149|chromosome 17 open reading frame 75##BC054035|C17orf75|64149|chromosome 17 open reading frame 75##BC047325|C17orf75|64149|chromosome 17 open reading frame 75##BC026017|C17orf75|64149|chromosome 17 open reading frame 75##BC035715|C17orf75|64149|chromosome 17 open reading frame 75##AF305686|C17orf75|64149|chromosome 17 open reading frame 75##NM_022344|C17orf75|64149|chromosome 17 open reading frame 75##BC002372|ZNF207|7756|zinc finger protein 207##NM_001032293|ZNF207|7756|zinc finger protein 207##NM_001098507|ZNF207|7756|zinc finger protein 207##NM_003457|ZNF207|7756|zinc finger protein 207	0.0	0.0	
chr17	74187686	74187825	reg1014182.p1	4.455	+	BC046460 NM_001454	-50381	-	TSC_hg19_v1_chr17_-_74099869 BX647763 NM_001013839 NM_001145297 NM_001145298 NM_001145299 NM_015219	-87890	-	AK295871 TSC_hg19_v1_chr17_-_74099825 FJ457119 FJ457120 AK023832 BC018466 AB028990 BC011045 AK128278 BC029432 AK022397 AL834324	-88031	-	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	48693	-	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	73529	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	73752	+	BC046460|FOXJ1|2302|forkhead box J1##NM_001454|FOXJ1|2302|forkhead box J1##BX647763|EXOC7|23265|exocyst complex component 7##NM_001013839|EXOC7|23265|exocyst complex component 7##NM_001145297|EXOC7|23265|exocyst complex component 7##NM_001145298|EXOC7|23265|exocyst complex component 7##NM_001145299|EXOC7|23265|exocyst complex component 7##NM_015219|EXOC7|23265|exocyst complex component 7##AK295871|EXOC7|23265|exocyst complex component 7##FJ457119|EXOC7|23265|exocyst complex component 7##FJ457120|EXOC7|23265|exocyst complex component 7##AK023832|EXOC7|23265|exocyst complex component 7##BC018466|EXOC7|23265|exocyst complex component 7##AB028990|EXOC7|23265|exocyst complex component 7##BC011045|EXOC7|23265|exocyst complex component 7##AK128278|EXOC7|23265|exocyst complex component 7##BC029432|EXOC7|23265|exocyst complex component 7##AK022397|EXOC7|23265|exocyst complex component 7##AL834324|EXOC7|23265|exocyst complex component 7##AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B	0.996216	0.0	
chr4	129731575	129731739	reg1010628.p2	4.455	+	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	-787	+	AK131272 NM_006320	-521674	-	TSC_hg19_v1_chr4_-_129208969 BC092478	-522666	-	TSC_hg19_v1_chr4_+_129732427 BC032376	796	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	282933	-	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	283210	+	NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC092478|PGRMC2|10424|progesterone receptor membrane component 2##BC032376|PHF17|79960|PHD finger protein 17##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33	0.998777	0.0	
chr7	106505519	106505642	reg1011911.p2	4.455	+	AK093350 AX748070 BC013906 TSC_hg19_v1_chr7_-_106301480 NM_175884	-204077	-	BC072439 TSC_hg19_v1_chr7_-_105925430 BC106046 NM_005746	-580057	-	AB590725 CU687232 U02020 BC020691 TSC_hg19_v1_chr7_-_105925367 AK292851 AK304085	-580218	-	TSC_hg19_v1_chr7_+_106505701 AK292684	133	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	194	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	349	+	AK093350|C7orf74|168455|chromosome 7 open reading frame 74##BC013906|C7orf74|168455|chromosome 7 open reading frame 74##NM_175884|C7orf74|168455|chromosome 7 open reading frame 74##BC072439|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC106046|NAMPT|10135|nicotinamide phosphoribosyltransferase##NM_005746|NAMPT|10135|nicotinamide phosphoribosyltransferase##U02020|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC020691|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK292851|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK304085|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK292684|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide	0.981681	0.0	denovo_WM_7:3:0.953
chr7	98477770	98477864	reg1007395.p2	4.455	+	TSC_hg19_v1_chr7_+_98476154 AF076974 NM_001244580 NM_003496 AF110377	-1667	+	TSC_hg19_v1_chr7_-_98467663 NM_001134450 NM_001134451 NM_152913 AY358583	-10141	-	AK225783 AK295543 BC030793 TSC_hg19_v1_chr7_-_98467638	-10190	-	AF199364 AB385491 AF464850 TSC_hg19_v1_chr7_-_98741471	263606	-	TSC_hg19_v1_chr7_-_98741637 BC136804 BC144414	263813	-	TSC_hg19_v1_chr7_-_98741752 AB046845 BC152468 NM_001199847 NM_020429 NM_181349	263932	-	AF076974|TRRAP|8295|transformation/transcription domain-associated protein##NM_001244580|TRRAP|8295|transformation/transcription domain-associated protein##NM_003496|TRRAP|8295|transformation/transcription domain-associated protein##AF110377|TRRAP|8295|transformation/transcription domain-associated protein##NM_001134450|TMEM130|222865|transmembrane protein 130##NM_001134451|TMEM130|222865|transmembrane protein 130##NM_152913|TMEM130|222865|transmembrane protein 130##AY358583|TMEM130|222865|transmembrane protein 130##AK225783|TMEM130|222865|transmembrane protein 130##AK295543|TMEM130|222865|transmembrane protein 130##BC030793|TMEM130|222865|transmembrane protein 130##AF199364|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##AF464850|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC136804|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC144414|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##AB046845|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC152468|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##NM_001199847|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##NM_020429|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##NM_181349|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1	0.983456	0.0	denovo_WM_7:76:0.320	denovo_WM_7:77:0.320	denovo_WM_7:78:0.320
chr11	43810125	43810280	reg1012185.p1	4.454	+	NM_016142 TSC_hg19_v1_chr11_+_43702287 AK027882 AK075011 AK292625 AK075216 AK074952 AF078850 BC012043 AK222881 AK301663 BC012536 EU176708	-107944	+	TSC_hg19_v1_chr11_+_43665785 AK095484	-144418	+	TSC_hg19_v1_chr11_+_43380492 AK001752 BC017238 BC033000	-429710	+	TSC_hg19_v1_chr11_+_43902380 NM_139178 AK315266 AB042029 BC067257	92191	+	TSC_hg19_v1_chr11_+_43964186 NM_001145033 BC052560	153807	+	AB231734 NM_001031854 BC144554	259345	+	NM_016142|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK027882|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK075011|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK292625|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK075216|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK074952|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AF078850|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##BC012043|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK222881|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK301663|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##BC012536|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##EU176708|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK001752|TTC17|55761|tetratricopeptide repeat domain 17##BC017238|TTC17|55761|tetratricopeptide repeat domain 17##BC033000|TTC17|55761|tetratricopeptide repeat domain 17##NM_139178|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##AK315266|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##AB042029|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##BC067257|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##NM_001145033|C11orf96|387763|chromosome 11 open reading frame 96##BC052560|C11orf96|387763|chromosome 11 open reading frame 96##AB231734|ACCSL|390110|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like##NM_001031854|ACCSL|390110|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like##BC144554|ACCSL|390110|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like	0.994297	0.0	
chr15	93425491	93425634	reg1011373.p2	4.454	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-148173	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-226683	-	AK057393 NM_153040	-410656	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	17924	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	18018	+	AK295909 TSC_hg19_v1_chr15_+_93447798	22198	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	0.0	0.0	
chr4	70715778	70715868	reg1009131.p2	4.454	+	BC010895 NM_014465	-89394	-	AK314209 AK304249 NM_001252274 NM_001252275 NM_006798	-196858	-	FJ664272 FJ664273 NM_001105677	-210464	-	S77383 Y11195 AK310845 U08098 TSC_hg19_v1_chr4_-_70725864 BC027956 NM_005420	10007	-	NM_001025104 NM_001890 X78416 BC128227 BC128228 U23157	80985	+	X55739 BC069554 BC096194 BC096195 BC096196 BC096197 NM_001891 X17070	110895	-	BC010895|SULT1B1|27284|sulfotransferase family, cytosolic, 1B, member 1##NM_014465|SULT1B1|27284|sulfotransferase family, cytosolic, 1B, member 1##AK314209|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##AK304249|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_001252274|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_001252275|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##NM_006798|UGT2A1|10941|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus##FJ664272|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##FJ664273|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##NM_001105677|UGT2A2|574537|UDP glucuronosyltransferase 2 family, polypeptide A2##S77383|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1##Y11195|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1##AK310845|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1##U08098|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1##BC027956|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1##NM_005420|SULT1E1|6783|sulfotransferase family 1E, estrogen-preferring, member 1##NM_001025104|CSN1S1|1446|casein alpha s1##NM_001890|CSN1S1|1446|casein alpha s1##X78416|CSN1S1|1446|casein alpha s1##BC128227|CSN1S1|1446|casein alpha s1##BC128228|CSN1S1|1446|casein alpha s1##U23157|CSN1S1|1446|casein alpha s1##X55739|CSN2|1447|casein beta##BC069554|CSN2|1447|casein beta##BC096194|CSN2|1447|casein beta##BC096195|CSN2|1447|casein beta##BC096196|CSN2|1447|casein beta##BC096197|CSN2|1447|casein beta##NM_001891|CSN2|1447|casein beta##X17070|CSN2|1447|casein beta	0.0	0.0	
chr4	80252900	80252980	reg1011870.p1	4.454	+	BC063623 BC080651 BC004552 NM_032693	-5779	-	AK055774 BX648346 CU689134 AY424281 BC029604 TSC_hg19_v1_chr4_-_79860593 BC031256 BC047510 AK291232 NM_001040202 AX775925	-392458	-	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	-555317	+	CU688758 DQ891321 DQ894505 BC058888 AK312768 BC029820 BC048274 X78712 NM_033214 AK292241 BC027598	76427	-	AB527650 AY233452 TSC_hg19_v1_chr4_-_80993874 AY040326 BC114374 AB209913	740948	-	TSC_hg19_v1_chr4_-_80994237 AK091721 AX747144	741297	-	BC063623|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC080651|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##BC004552|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##NM_032693|NAA11|84779|N(alpha)-acetyltransferase 11, NatA catalytic subunit##AK055774|PAQR3|152559|progestin and adipoQ receptor family member III##BX648346|PAQR3|152559|progestin and adipoQ receptor family member III##AY424281|PAQR3|152559|progestin and adipoQ receptor family member III##BC029604|PAQR3|152559|progestin and adipoQ receptor family member III##BC031256|PAQR3|152559|progestin and adipoQ receptor family member III##BC047510|PAQR3|152559|progestin and adipoQ receptor family member III##AK291232|PAQR3|152559|progestin and adipoQ receptor family member III##NM_001040202|PAQR3|152559|progestin and adipoQ receptor family member III##AX775925|PAQR3|152559|progestin and adipoQ receptor family member III##AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase##DQ891321|GK2|2712|glycerol kinase 2##DQ894505|GK2|2712|glycerol kinase 2##BC058888|GK2|2712|glycerol kinase 2##BC029820|GK2|2712|glycerol kinase 2##BC048274|GK2|2712|glycerol kinase 2##X78712|GK2|2712|glycerol kinase 2##NM_033214|GK2|2712|glycerol kinase 2##AK292241|GK2|2712|glycerol kinase 2##BC027598|GK2|2712|glycerol kinase 2##AY233452|ANTXR2|118429|anthrax toxin receptor 2##AY040326|ANTXR2|118429|anthrax toxin receptor 2##BC114374|ANTXR2|118429|anthrax toxin receptor 2##AB209913|ANTXR2|118429|anthrax toxin receptor 2	0.988959	0.0	
chr5	176433843	176433952	reg1012261.p1	4.454	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	-309	-	U51333 BC028129 NM_002115	-107574	-	TSC_hg19_v1_chr5_+_176237521 AK131380 NM_133369 BC157824	-196342	+	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	15822	+	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	79985	+	NM_022963 X57205 AF202063 EU826602 AF359241 AB590389 DQ893458 DQ896348 EU826603 JN007471 JN007472 JN007473 JN007474 JN007475 JN007476 JN007477 JN007478 JN007479 JN007480 JN007481 JN007482	82679	+	AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##AK131380|UNC5A|90249|unc-5 homolog A (C. elegans)##NM_133369|UNC5A|90249|unc-5 homolog A (C. elegans)##BC157824|UNC5A|90249|unc-5 homolog A (C. elegans)##AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4##NM_022963|FGFR4|2264|fibroblast growth factor receptor 4##X57205|FGFR4|2264|fibroblast growth factor receptor 4##AF202063|FGFR4|2264|fibroblast growth factor receptor 4##EU826602|FGFR4|2264|fibroblast growth factor receptor 4##AF359241|FGFR4|2264|fibroblast growth factor receptor 4##DQ893458|FGFR4|2264|fibroblast growth factor receptor 4##DQ896348|FGFR4|2264|fibroblast growth factor receptor 4##EU826603|FGFR4|2264|fibroblast growth factor receptor 4	0.0	0.0	
chr7	129790727	129790834	reg1013347.p1	4.454	+	TSC_hg19_v1_chr7_+_129710580 BC009977	-80181	+	TSC_hg19_v1_chr7_+_129710402 D87454	-80347	+	TSC_hg19_v1_chr7_+_129710381 BC044884 NM_014997 BC036464	-80420	+	TSC_hg19_v1_chr7_-_129845244 AK027678 BC057784 AK027709 BC045618 AK074732 NM_032842	54496	-	BC017587 NM_145268 AK097635	56928	+	BC007009 NM_001869 BC014571 BC015140 AK293378 U19977 DQ893811 CU675491 BT007403	115934	+	BC009977|KLHDC10|23008|kelch domain containing 10##D87454|KLHDC10|23008|kelch domain containing 10##BC044884|KLHDC10|23008|kelch domain containing 10##NM_014997|KLHDC10|23008|kelch domain containing 10##BC036464|KLHDC10|23008|kelch domain containing 10##AK027678|TMEM209|84928|transmembrane protein 209##BC057784|TMEM209|84928|transmembrane protein 209##AK027709|TMEM209|84928|transmembrane protein 209##BC045618|TMEM209|84928|transmembrane protein 209##AK074732|TMEM209|84928|transmembrane protein 209##NM_032842|TMEM209|84928|transmembrane protein 209##BC017587|C7orf45|136263|chromosome 7 open reading frame 45##NM_145268|C7orf45|136263|chromosome 7 open reading frame 45##AK097635|C7orf45|136263|chromosome 7 open reading frame 45##BC007009|CPA2|1358|carboxypeptidase A2 (pancreatic)##NM_001869|CPA2|1358|carboxypeptidase A2 (pancreatic)##BC014571|CPA2|1358|carboxypeptidase A2 (pancreatic)##BC015140|CPA2|1358|carboxypeptidase A2 (pancreatic)##AK293378|CPA2|1358|carboxypeptidase A2 (pancreatic)##U19977|CPA2|1358|carboxypeptidase A2 (pancreatic)##DQ893811|CPA2|1358|carboxypeptidase A2 (pancreatic)##BT007403|CPA2|1358|carboxypeptidase A2 (pancreatic)	0.99834	0.0	denovo_WM_7:3:0.457	denovo_WM_7:4:0.457
chr9	108120349	108120469	reg1012673.p2	4.454	+	TSC_hg19_v1_chr9_+_108006993 AJ420812 BC049203 AB528737	-113342	+	TSC_hg19_v1_chr9_+_108006937 AJ272365	-113458	+	TSC_hg19_v1_chr9_+_108006931 NM_080546	-113496	+	AK309817 TSC_hg19_v1_chr9_+_108210342 NM_001145313 NM_031919 NM_207647 AF088031 AK299350 AK296433 AK299491 AF316830	89854	+	TSC_hg19_v1_chr9_+_108320420 NM_001079802 NM_001198963 NM_006731 AK300840 AK304460 BC058842 AB008226 AB609007	200014	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	304348	+	AJ420812|SLC44A1|23446|solute carrier family 44, member 1##BC049203|SLC44A1|23446|solute carrier family 44, member 1##AJ272365|SLC44A1|23446|solute carrier family 44, member 1##NM_080546|SLC44A1|23446|solute carrier family 44, member 1##AK309817|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_001145313|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_031919|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_207647|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AF088031|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK299350|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK296433|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AK299491|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##AF316830|FSD1L|83856|fibronectin type III and SPRY domain containing 1-like##NM_001079802|FKTN|2218|fukutin##NM_001198963|FKTN|2218|fukutin##NM_006731|FKTN|2218|fukutin##AK300840|FKTN|2218|fukutin##AK304460|FKTN|2218|fukutin##BC058842|FKTN|2218|fukutin##AB008226|FKTN|2218|fukutin##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2	0.0	0.0	
chr12	104884690	104884844	reg1009669.p1	4.453	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-33680	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-33959	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-33996	+	TSC_hg19_v1_chr12_+_105153261 AF131762	268510	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	437496	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	495323	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.811204	0.0	denovo_WM_7:39:0.736
chr1	227126917	227127097	reg1009139.p2	4.453	+	TSC_hg19_v1_chr1_+_227058316 NM_000447 NM_012486 AK292299 AK301143	-68727	+	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	-200069	-	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	-390390	+	NM_020247 TSC_hg19_v1_chr1_+_227127955	939	+	TSC_hg19_v1_chr1_+_227127991 BX648860 BC005171	968	+	TSC_hg19_v1_chr1_+_227127998 AK074693 AK092784 AK126200 AK293571 AK297735 AX747728 AK090494 AK301012 AX746479	988	+	NM_000447|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##NM_012486|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK292299|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##AK301143|PSEN2|5664|presenilin 2 (Alzheimer disease 4)##BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B##AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##NM_020247|ADCK3|56997|aarF domain containing kinase 3##BX648860|ADCK3|56997|aarF domain containing kinase 3##BC005171|ADCK3|56997|aarF domain containing kinase 3##AK074693|ADCK3|56997|aarF domain containing kinase 3##AK092784|ADCK3|56997|aarF domain containing kinase 3##AK126200|ADCK3|56997|aarF domain containing kinase 3##AK293571|ADCK3|56997|aarF domain containing kinase 3##AK297735|ADCK3|56997|aarF domain containing kinase 3##AK090494|ADCK3|56997|aarF domain containing kinase 3##AK301012|ADCK3|56997|aarF domain containing kinase 3	0.999587	0.0	
chr14	103285477	103285657	reg1009712.p2	4.453	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-41667	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-41748	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-226406	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	103431	+	TSC_hg19_v1_chr14_-_103430941 BX248752	145391	-	AB384568 TSC_hg19_v1_chr14_-_103523568	237974	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	0.0	0.0	
chr1	9685359	9685473	reg1010455.p2	4.453	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-36460	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-85780	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	-85884	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	26388	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	198479	-	TSC_hg19_v1_chr1_-_9884023 AK304813	198605	-	BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1	1.980057	0.0	denovo_WM_7:26:0.234	denovo_WM_7:27:0.521	denovo_WM_7:42:0.244	denovo_WM_7:43:0.303	denovo_WM_7:44:0.363
chr20	48393039	48393165	reg1013553.p2	4.453	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-62636	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-62746	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-62872	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	36206	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	36316	+	AK289644 NM_001135773	137173	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	1.82344	0.0	denovo_WM_7:78:0.487	denovo_WM_7:79:0.242	denovo_WM_7:93:0.252	denovo_WM_7:94:0.490
chr4	139904516	139904627	reg1011355.p1	4.453	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-741207	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-1450929	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-1450979	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	32422	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	100832	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	101040	-	AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.940595	0.0	denovo_WM_7:-9:0.819
chr8	37731709	37731889	reg1000345.p2	4.453	+	TSC_hg19_v1_chr8_-_37727937 AK026177	-3849	-	NM_018310 TSC_hg19_v1_chr8_-_37707430 AK294337	-24355	-	TSC_hg19_v1_chr8_-_37707395 AK315420 BC010648 AK001914 AF206673	-24413	-	AY280968 DQ083995 AF368294 DQ236342 BC077720 BC054881 TSC_hg19_v1_chr8_-_37757016 AK291781 AK026275 NM_001002814 NM_025151	25202	-	BC029504 NM_152413	65847	-	S53291 TSC_hg19_v1_chr8_-_37822825	91020	-	AK026177|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_018310|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK294337|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK315420|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##BC010648|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AK001914|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AF206673|BRF2|55290|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like##AY280968|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ083995|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AF368294|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##DQ236342|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC077720|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC054881|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK291781|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##AK026275|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_001002814|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##NM_025151|RAB11FIP1|80223|RAB11 family interacting protein 1 (class I)##BC029504|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##NM_152413|GOT1L1|137362|glutamic-oxaloacetic transaminase 1-like 1##S53291|ADRB3|155|adrenergic, beta-3-, receptor	0.0	0.0	
chr8	48812581	48812761	reg1008275.p1	4.453	+	TSC_hg19_v1_chr8_-_48650725 BC023510 BC105109 NM_005195 M83667	-161935	-	EU831483 EU831570 TSC_hg19_v1_chr8_-_48650683	-161987	-	TSC_hg19_v1_chr8_+_48173546 D63480 BC031627 AK293809 AK293972 AK294275 AK297681	-639131	+	TSC_hg19_v1_chr8_-_48872697 AK296833	60018	-	TSC_hg19_v1_chr8_-_48872710 U34994 NM_001081640 NM_006904 U47077	60056	-	NM_005914 NM_182746	60091	+	BC105109|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##NM_005195|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##M83667|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##EU831483|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##EU831570|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##D63480|KIAA0146|23514|KIAA0146##AK293809|KIAA0146|23514|KIAA0146##AK293972|KIAA0146|23514|KIAA0146##AK294275|KIAA0146|23514|KIAA0146##AK297681|KIAA0146|23514|KIAA0146##AK296833|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##U34994|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_001081640|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_006904|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##U47077|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_005914|MCM4|4173|minichromosome maintenance complex component 4##NM_182746|MCM4|4173|minichromosome maintenance complex component 4	0.0	0.0	
chr13	51467565	51467718	reg1001075.p1	4.452	+	AY357595 BC104892 BC112009 NM_198989 AK303567 AK126830	-49689	-	AJ412041 AJ412042 AJ412043 TSC_hg19_v1_chr13_+_50760088	-707588	+	TSC_hg19_v1_chr13_-_50699781 AF380424	-767826	-	NM_001142279 NM_024570 TSC_hg19_v1_chr13_+_51483898	16215	+	TSC_hg19_v1_chr13_+_51483905 AY764036	16263	+	TSC_hg19_v1_chr13_+_51483926 AK021774 AK223340 BC036744	16313	+	AY357595|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC104892|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC112009|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_198989|DLEU7|220107|deleted in lymphocytic leukemia, 7##AK126830|DLEU7|220107|deleted in lymphocytic leukemia, 7##AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##NM_001142279|RNASEH2B|79621|ribonuclease H2, subunit B##NM_024570|RNASEH2B|79621|ribonuclease H2, subunit B##AY764036|RNASEH2B|79621|ribonuclease H2, subunit B##AK021774|RNASEH2B|79621|ribonuclease H2, subunit B##AK223340|RNASEH2B|79621|ribonuclease H2, subunit B##BC036744|RNASEH2B|79621|ribonuclease H2, subunit B	0.0	0.0	
chr15	79299594	79299680	reg1011853.p2	4.452	+	NM_153815 S62035	-1636	-	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	-62238	-	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	-62302	-	L26584 CU691844 AB385192 TSC_hg19_v1_chr15_-_79382954	83262	-	AK290135 TSC_hg19_v1_chr15_-_79383114 BC040275 NM_001145648 NM_002891	83511	-	AK127037 NM_001146341	275508	+	NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##L26584|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AK290135|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##BC040275|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##NM_001145648|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##NM_002891|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AK127037|ANKRD34C|390616|ankyrin repeat domain 34C##NM_001146341|ANKRD34C|390616|ankyrin repeat domain 34C	0.0	0.693567	CTCF.p2:18:0.694
chr16	66623701	66623881	reg1006344.p2	4.452	+	AY862139 NM_001199317 NM_144673 AF479260 BC025354 AK098598 CU692974 DQ892836 EU176735	-10362	+	NM_181269 NM_181270 NM_181271 NM_181272 NM_181283 NM_181296 AY174118 AY174119 AY174120 AY174121 AY174122 AY174123 AY174124 AY174125 AY174126 AY174127 AY174128 AY174129 AY174130 AY174131 AY174132 AY174133 TSC_hg19_v1_chr16_+_66600302 BC057852 NM_052999 NM_181268 BC018586	-23439	+	TSC_hg19_v1_chr16_+_66586551 AB590157 DQ893388 DQ896708	-37223	+	AK056324 TSC_hg19_v1_chr16_+_66638053	14205	+	TSC_hg19_v1_chr16_+_66638261 NM_144601 AF479813	14456	+	TSC_hg19_v1_chr16_+_66638606 BC047701 NM_181553 BC036042 BC040227	14783	+	AY862139|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_001199317|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_144673|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##AF479260|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##BC025354|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##AK098598|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##DQ892836|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##EU176735|CMTM2|146225|CKLF-like MARVEL transmembrane domain containing 2##NM_181269|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181270|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181271|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181272|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181283|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181296|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174118|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174119|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174120|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174121|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174122|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174123|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174124|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174125|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174126|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174127|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174128|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174129|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174130|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174131|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174132|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##AY174133|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##BC057852|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_052999|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##NM_181268|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##BC018586|CMTM1|113540|CKLF-like MARVEL transmembrane domain containing 1##DQ893388|CKLF|51192|chemokine-like factor##DQ896708|CKLF|51192|chemokine-like factor##AK056324|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##NM_144601|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##AF479813|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC047701|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##NM_181553|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC036042|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3##BC040227|CMTM3|123920|CKLF-like MARVEL transmembrane domain containing 3	1.992622	0.0	denovo_WM_7:-33:0.382	denovo_WM_7:-34:0.291	denovo_WM_7:-50:0.276	denovo_WM_7:-51:0.368
chr19	49831231	49831343	reg1007633.p1	4.452	+	BC034948 BC039336 NM_014037	-2834	-	AK000048 TSC_hg19_v1_chr19_+_49669495	-161837	+	TSC_hg19_v1_chr19_+_49661048 AK074664 AF497623 AK292862 AY297044 AY297045 AY297046 AY046396 AJ575813 BC132727 BC144122 BC144123 AK295820	-170221	+	TSC_hg19_v1_chr19_+_49838662 AK301016	7371	+	TSC_hg19_v1_chr19_+_49838683 NM_001040031 NM_001774 AK301328	7391	+	TSC_hg19_v1_chr19_+_49838702 AL833693 BC110379	7425	+	BC034948|SLC6A16|28968|solute carrier family 6, member 16##NM_014037|SLC6A16|28968|solute carrier family 6, member 16##AK000048|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AF497623|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK292862|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297044|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297045|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297046|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY046396|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AJ575813|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC132727|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144122|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144123|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK295820|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK301016|CD37|951|CD37 molecule##NM_001040031|CD37|951|CD37 molecule##NM_001774|CD37|951|CD37 molecule##AK301328|CD37|951|CD37 molecule##AL833693|CD37|951|CD37 molecule##BC110379|CD37|951|CD37 molecule	0.993547	0.0	denovo_WM_7:-26:0.223	denovo_WM_7:-27:0.647
chr19	9419929	9420109	reg1009198.p2	4.452	+	BC109267 BC109268 NM_198535 EU446770	-4225	-	BC146920 NM_001079935	-58357	+	BC137147 BC137162 NM_001005191	-94473	-	NM_001202406 NM_001202407 NM_001202408 NM_001202409 NM_001202410 NM_001202411 NM_032497	14428	+	AK027700 AK308517 AK309952 AK310117 AK092348 AX747491 TSC_hg19_v1_chr19_+_9434880 AK056489 AK310020 AK310781 AK298169 NM_001172650 NM_001202412 BC006436 AL389938 BC034489	14916	+	NM_001202425 U37251	15366	+	BC109267|ZNF699|374879|zinc finger protein 699##BC109268|ZNF699|374879|zinc finger protein 699##NM_198535|ZNF699|374879|zinc finger protein 699##EU446770|ZNF266|10781|zinc finger protein 266##BC146920|OR7E24|26648|olfactory receptor, family 7, subfamily E, member 24##NM_001079935|OR7E24|26648|olfactory receptor, family 7, subfamily E, member 24##BC137147|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##BC137162|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##NM_001005191|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##NM_001202406|ZNF559|84527|zinc finger protein 559##NM_001202407|ZNF559|84527|zinc finger protein 559##NM_001202408|ZNF559|84527|zinc finger protein 559##NM_001202409|ZNF559|84527|zinc finger protein 559##NM_001202410|ZNF559|84527|zinc finger protein 559##NM_001202411|ZNF559|84527|zinc finger protein 559##NM_032497|ZNF559|84527|zinc finger protein 559##AK027700|ZNF559|84527|zinc finger protein 559##AK308517|ZNF559|84527|zinc finger protein 559##AK309952|ZNF559|84527|zinc finger protein 559##AK310117|ZNF559|84527|zinc finger protein 559##AK092348|ZNF559|84527|zinc finger protein 559##AK056489|ZNF559|84527|zinc finger protein 559##AK310020|ZNF559|84527|zinc finger protein 559##AK310781|ZNF559|84527|zinc finger protein 559##AK298169|ZNF559|84527|zinc finger protein 559##NM_001172650|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##NM_001202412|ZNF559|84527|zinc finger protein 559##BC006436|ZNF559|84527|zinc finger protein 559##AL389938|ZNF559|84527|zinc finger protein 559##BC034489|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##NM_001202425|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##U37251|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough	0.0	0.0	
chr6	16432951	16433061	reg1007195.p2	4.452	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-194155	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-289696	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-303569	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	328691	-	NM_001190766	669482	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	848848	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	1.860553	0.0	denovo_WM_7:-56:0.457	denovo_WM_7:-58:0.424
chr7	8631453	8631565	reg1009113.p2	4.452	+	AK315141 TSC_hg19_v1_chr7_+_8474016 AK091655 BC047505 AK296248	-157389	+	AB047362 AB073665 NM_152745 TSC_hg19_v1_chr7_+_8473633	-157899	+	TSC_hg19_v1_chr7_+_8473238 AK095624	-158271	+	CR407618 CR541716 TSC_hg19_v1_chr7_-_10979730 AF201077 BC101794 BC101796	2348200	-	AK130950 TSC_hg19_v1_chr7_-_10979760 AK024837 U94586 BC105295 NM_002489	2348275	-	TSC_hg19_v1_chr7_+_11013534 AK294419 NM_014660 AK295461 AB018326 BC152414	2382001	+	AK315141|NXPH1|30010|neurexophilin 1##AK091655|NXPH1|30010|neurexophilin 1##BC047505|NXPH1|30010|neurexophilin 1##AK296248|NXPH1|30010|neurexophilin 1##AB047362|NXPH1|30010|neurexophilin 1##AB073665|NXPH1|30010|neurexophilin 1##NM_152745|NXPH1|30010|neurexophilin 1##AK095624|NXPH1|30010|neurexophilin 1##CR407618|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##CR541716|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AF201077|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC101794|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC101796|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK130950|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK024837|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##U94586|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC105295|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##NM_002489|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK294419|PHF14|9678|PHD finger protein 14##NM_014660|PHF14|9678|PHD finger protein 14##AK295461|PHF14|9678|PHD finger protein 14##AB018326|PHF14|9678|PHD finger protein 14##BC152414|PHF14|9678|PHD finger protein 14	0.993761	0.0	denovo_WM_7:-24:0.813
chr14	103277836	103278016	reg1006394.p2	4.451	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-34026	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-34107	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-218765	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	111072	+	TSC_hg19_v1_chr14_-_103430941 BX248752	153032	-	AB384568 TSC_hg19_v1_chr14_-_103523568	245615	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	1.662464	0.0	denovo_WM_7:-4:0.646
chr14	69255317	69255446	reg1010893.p1	4.451	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-968861	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-972082	-	AK315462 NM_152443	-1086779	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	4339	-	NM_001244698 NM_004926	5249	-	NM_001244701 AB528867	7603	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	2.493612	0.0	denovo_WM_7:-28:0.218	denovo_WM_7:-66:0.503	denovo_WM_7:-69:0.397	denovo_WM_7:71:0.804
chr16	28512668	28512848	reg1010950.p2	4.451	+	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	-6796	+	NM_001042432	-9136	-	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	-9518	-	AY099296 CU687548 BC062422 NM_145659	5384	-	AB463938 BT006896 CR542144 TSC_hg19_v1_chr16_-_28550296 BC002434 AK312135 AF135266	37514	-	TSC_hg19_v1_chr16_-_28550361 AF069073 NM_001042483 NM_012385	37651	-	NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor##NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AY099296|IL27|246778|interleukin 27##BC062422|IL27|246778|interleukin 27##NM_145659|IL27|246778|interleukin 27##BT006896|NUPR1|26471|nuclear protein, transcriptional regulator, 1##CR542144|NUPR1|26471|nuclear protein, transcriptional regulator, 1##BC002434|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AK312135|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AF135266|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AF069073|NUPR1|26471|nuclear protein, transcriptional regulator, 1##NM_001042483|NUPR1|26471|nuclear protein, transcriptional regulator, 1##NM_012385|NUPR1|26471|nuclear protein, transcriptional regulator, 1	0.0	0.0	
chr21	35322120	35322300	reg1009690.p2	4.451	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-34118	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-131540	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-307355	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	123631	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	123719	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	414136	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.998732	0.0	denovo_WM_7:-1:0.494	denovo_WM_7:-2:0.494
chr5	112184115	112184255	reg1007200.p1	4.451	+	NM_000038 NM_001127510 TSC_hg19_v1_chr5_+_112073584 BC034955 BC056268 AB210001	-110612	+	TSC_hg19_v1_chr5_+_112043199 NM_001127511 AK294544	-140974	+	AB030240 BC114942 BC114632 TSC_hg19_v1_chr5_-_111754966 BC031042 NM_022140	-429312	-	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	12744	+	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	12839	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	73802	-	NM_000038|APC|324|adenomatous polyposis coli##NM_001127510|APC|324|adenomatous polyposis coli##BC034955|APC|324|adenomatous polyposis coli##BC056268|APC|324|adenomatous polyposis coli##AB210001|APC|324|adenomatous polyposis coli##NM_001127511|APC|324|adenomatous polyposis coli##AK294544|APC|324|adenomatous polyposis coli##AB030240|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114942|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114632|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC031042|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##NM_022140|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5	0.996534	0.110947	
chr8	87484859	87484970	reg1010428.p2	4.451	+	TSC_hg19_v1_chr8_+_87354966 AY345857 AK292800 BC036065 NM_007013	-129864	+	AJ417661 BC125165 BC125166 AK055815 NM_138817 BC029436	-242356	-	BC065207 TSC_hg19_v1_chr8_+_87111138 AK096027 NM_152565 AY079172	-373770	+	CU679433 BX640636 AK303122 TSC_hg19_v1_chr8_-_87520885 BC009671 AK297896 AF151848 AK000672	35999	-	TSC_hg19_v1_chr8_-_87520981 NM_016033	36082	-	TSC_hg19_v1_chr8_+_87526660 NM_003909	41739	+	AY345857|WWP1|11059|WW domain containing E3 ubiquitin protein ligase 1##AK292800|WWP1|11059|WW domain containing E3 ubiquitin protein ligase 1##BC036065|WWP1|11059|WW domain containing E3 ubiquitin protein ligase 1##NM_007013|WWP1|11059|WW domain containing E3 ubiquitin protein ligase 1##AJ417661|SLC7A13|157724|solute carrier family 7 (anionic amino acid transporter), member 13##BC125165|SLC7A13|157724|solute carrier family 7 (anionic amino acid transporter), member 13##BC125166|SLC7A13|157724|solute carrier family 7 (anionic amino acid transporter), member 13##AK055815|SLC7A13|157724|solute carrier family 7 (anionic amino acid transporter), member 13##NM_138817|SLC7A13|157724|solute carrier family 7 (anionic amino acid transporter), member 13##BC029436|SLC7A13|157724|solute carrier family 7 (anionic amino acid transporter), member 13##BC065207|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2##AK096027|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2##NM_152565|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2##AY079172|ATP6V0D2|245972|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2##BX640636|FAM82B|51115|family with sequence similarity 82, member B##AK303122|FAM82B|51115|family with sequence similarity 82, member B##BC009671|FAM82B|51115|family with sequence similarity 82, member B##AK297896|FAM82B|51115|family with sequence similarity 82, member B##AF151848|FAM82B|51115|family with sequence similarity 82, member B##AK000672|FAM82B|51115|family with sequence similarity 82, member B##NM_016033|FAM82B|51115|family with sequence similarity 82, member B##NM_003909|CPNE3|8895|copine III	0.276142	0.0	
chr10	24644560	24644683	reg1014061.p1	4.450	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-146527	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-146833	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-660944	+	TSC_hg19_v1_chr10_+_24755441 AK300422	110823	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	110848	+	AK307604 TSC_hg19_v1_chr10_-_25012174	367552	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	1.985381	0.0	
chr12	123205833	123205970	reg1003564.p3	4.450	+	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-4523	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-18029	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-194097	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	9104	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	31490	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	53200	+	AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62	0.533076	0.0	denovo_WM_7:-38:0.523
chr17	28678880	28679021	reg1013369.p2	4.450	+	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	-17888	-	NM_000386 TSC_hg19_v1_chr17_-_28619220	-59747	-	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	-59991	-	TSC_hg19_v1_chr17_+_28705953 NM_001304 BC051702 BC045549 BC054116	26989	+	TSC_hg19_v1_chr17_+_28705963 D85390 BC045624	27016	+	TSC_hg19_v1_chr17_+_28705984 U65090 AB385118	27039	+	AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_000386|BLMH|642|bleomycin hydrolase##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_001304|CPD|1362|carboxypeptidase D##BC051702|CPD|1362|carboxypeptidase D##BC045549|CPD|1362|carboxypeptidase D##BC054116|CPD|1362|carboxypeptidase D##D85390|CPD|1362|carboxypeptidase D##BC045624|CPD|1362|carboxypeptidase D##U65090|CPD|1362|carboxypeptidase D	0.997871	0.0	
chr19	17178057	17178142	reg1010601.p1	4.450	+	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-40559	-	AK075099 TSC_hg19_v1_chr19_-_17014494	-163646	-	AK092632 TSC_hg19_v1_chr19_-_17007756 AK124052	-170351	-	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	8222	-	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	8494	+	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	148073	+	AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK075099|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK092632|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK124052|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	0.995621	0.0	denovo_WM_7:-76:0.455	denovo_WM_7:-77:0.455
chr2	109402718	109402837	reg1011127.p2	4.450	+	TSC_hg19_v1_chr2_+_109384621 AY170822	-18094	+	TSC_hg19_v1_chr2_+_109335970 D42063 NM_006267	-66839	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	-131289	+	TSC_hg19_v1_chr2_+_109403228 BC050579 AK125199 AK057307 NM_144978 BC015847 BC038421	425	+	TSC_hg19_v1_chr2_-_109605623 AK296936	202842	-	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	202970	-	AY170822|RANBP2|5903|RAN binding protein 2##D42063|RANBP2|5903|RAN binding protein 2##NM_006267|RANBP2|5903|RAN binding protein 2##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3##BC050579|CCDC138|165055|coiled-coil domain containing 138##AK125199|CCDC138|165055|coiled-coil domain containing 138##AK057307|CCDC138|165055|coiled-coil domain containing 138##NM_144978|CCDC138|165055|coiled-coil domain containing 138##BC015847|CCDC138|165055|coiled-coil domain containing 138##BC038421|CCDC138|165055|coiled-coil domain containing 138##AK296936|EDAR|10913|ectodysplasin A receptor##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor	0.997902	0.0	denovo_WM_7:-58:0.298	denovo_WM_7:-59:0.298	denovo_WM_7:-60:0.298
chr2	68423338	68423457	reg1013265.p1	4.450	+	TSC_hg19_v1_chr2_+_68384999 BC008304 NM_020143 AK291715 AF349314 AF164799 AK313204 AK223118 L48692 AK225641 BC018152	-38300	+	CU680746 EU831464 EU831551 EU832799 GQ129363 TSC_hg19_v1_chr2_-_68384660 BC036904 BC014022 AL834142 BC066657 BC020271 AK056303 NM_138458 AY541587 AK058090	-38763	-	NM_001190263 NM_001190265 NM_006333 NM_173177 TSC_hg19_v1_chr2_-_68290160	-133237	-	TSC_hg19_v1_chr2_-_68479665 AK307136 AK314893 BC027913 NM_000945	56198	-	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	123703	-	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	168975	+	BC008304|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##NM_020143|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK291715|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF349314|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF164799|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK313204|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK223118|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK225641|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##BC018152|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##EU831464|WDR92|116143|WD repeat domain 92##EU831551|WDR92|116143|WD repeat domain 92##EU832799|WDR92|116143|WD repeat domain 92##GQ129363|WDR92|116143|WD repeat domain 92##BC036904|WDR92|116143|WD repeat domain 92##BC014022|WDR92|116143|WD repeat domain 92##AL834142|WDR92|116143|WD repeat domain 92##BC066657|WDR92|116143|WD repeat domain 92##BC020271|WDR92|116143|WD repeat domain 92##AK056303|WDR92|116143|WD repeat domain 92##NM_138458|WDR92|116143|WD repeat domain 92##AY541587|WDR92|116143|WD repeat domain 92##AK058090|WDR92|116143|WD repeat domain 92##NM_001190263|C1D|10438|C1D nuclear receptor corepressor##NM_001190265|C1D|10438|C1D nuclear receptor corepressor##NM_006333|C1D|10438|C1D nuclear receptor corepressor##NM_173177|C1D|10438|C1D nuclear receptor corepressor##AK307136|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##AK314893|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC027913|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_000945|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin	0.0	0.940808	CTCF.p2:54:0.941
chr6	87864684	87864806	reg1012344.p1	4.450	+	V00518 AK023644 AK311972 BC055080 BC010957 BC020782 NM_000735 NM_001252383	-59927	-	NM_000865	-217722	+	BC009220 BC108291 AK311192 TSC_hg19_v1_chr6_-_86388452	-1476308	-	TSC_hg19_v1_chr6_+_87865282 NM_015021 AK123473 BX537746 CR936740	544	+	TSC_hg19_v1_chr6_+_87964930 AL832366	100235	+	BC016386 TSC_hg19_v1_chr6_+_87967437	102690	+	V00518|CGA|1081|glycoprotein hormones, alpha polypeptide##AK311972|CGA|1081|glycoprotein hormones, alpha polypeptide##BC055080|CGA|1081|glycoprotein hormones, alpha polypeptide##BC010957|CGA|1081|glycoprotein hormones, alpha polypeptide##BC020782|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000735|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_001252383|CGA|1081|glycoprotein hormones, alpha polypeptide##NM_000865|HTR1E|3354|5-hydroxytryptamine (serotonin) receptor 1E##BC009220|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##BC108291|SNHG5|387066|small nucleolar RNA host gene 5 (non-protein coding)##NM_015021|ZNF292|23036|zinc finger protein 292##AK123473|ZNF292|23036|zinc finger protein 292##BX537746|ZNF292|23036|zinc finger protein 292##AL832366|ZNF292|23036|zinc finger protein 292##BC016386|ZNF292|23036|zinc finger protein 292	0.0	0.0	
chr14	99684743	99684829	reg1011511.p1	4.449	+	AK098639 NM_182560	-506837	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-2421071	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-2716002	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	52831	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	53104	-	BC120967 BC120968 BC127624 BC127625 TSC_hg19_v1_chr14_-_99947104	262308	-	AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##BC120967|SETD3|84193|SET domain containing 3##BC120968|SETD3|84193|SET domain containing 3##BC127624|SETD3|84193|SET domain containing 3##BC127625|SETD3|84193|SET domain containing 3	0.0	0.0	
chr16	13531062	13531131	reg1009127.p2	4.449	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-535628	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-633377	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-633445	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	482935	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	633990	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	749422	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.0	0.0	
chr14	50580366	50580459	reg1007317.p2	4.448	+	AF390030 NM_001014830	-21052	-	AK091232 AX746864 NM_001012706	-106175	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-220006	+	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	2858	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	117571	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	117688	-	AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)	1.668889	0.0	denovo_WM_7:44:0.654
chr17	47420085	47420217	reg1002520.p2	4.448	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-112008	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-132074	+	NM_001198754	-132216	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	19429	-	BC095460 TSC_hg19_v1_chr17_-_47492215	72064	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	72097	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	0.99874	0.0	denovo_WM_7:104:0.494	denovo_WM_7:105:0.494
chr18	4355776	4355879	reg1006127.p4	4.448	+	AK294777 AK294717 NM_001242762 NM_001242763	-481100	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-481543	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-510497	-	AK304101 TSC_hg19_v1_chr18_-_4455255	99426	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	99443	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	841425	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.990863	0.0	denovo_WM_7:-73:0.237	denovo_WM_7:-74:0.237	denovo_WM_7:-75:0.237	denovo_WM_7:-76:0.237
chr19	10356081	10356191	reg1012054.p1	4.448	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-14130	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-50409	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-50531	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	6511	+	TSC_hg19_v1_chr19_+_10362889 BC009858	6762	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	6856	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.016419	
chr20	30653981	30654101	reg1010222.p2	4.448	+	TSC_hg19_v1_chr20_+_30640055 NM_001172129 NM_001172130 NM_001172131 NM_001172132 NM_001172133 NM_002110 AK289896 AK225819 AK290928 AK298726 AK026432 BC108930 BC108931 BC113854 BC114463 AK314335 BC073748 BC094847 BC014435	-13995	+	NM_080625 AK057090 BC030254	-55793	+	AY534245 NM_001011718 TSC_hg19_v1_chr20_+_30555960	-98152	+	TSC_hg19_v1_chr20_+_30697308 NM_014742	43328	+	TSC_hg19_v1_chr20_+_30697532 AK126534 AK294980 AK296500 AK302439 BC021107 D87444	43500	+	TSC_hg19_v1_chr20_-_30795547 AK292450 BC000197 D83784 AF006005 BC023655 NM_002657	141434	-	NM_001172129|HCK|3055|hemopoietic cell kinase##NM_001172130|HCK|3055|hemopoietic cell kinase##NM_001172131|HCK|3055|hemopoietic cell kinase##NM_001172132|HCK|3055|hemopoietic cell kinase##NM_001172133|HCK|3055|hemopoietic cell kinase##NM_002110|HCK|3055|hemopoietic cell kinase##AK289896|HCK|3055|hemopoietic cell kinase##AK225819|HCK|3055|hemopoietic cell kinase##AK290928|HCK|3055|hemopoietic cell kinase##AK298726|HCK|3055|hemopoietic cell kinase##AK026432|HCK|3055|hemopoietic cell kinase##BC108930|HCK|3055|hemopoietic cell kinase##BC108931|HCK|3055|hemopoietic cell kinase##BC113854|HCK|3055|hemopoietic cell kinase##BC114463|HCK|3055|hemopoietic cell kinase##AK314335|HCK|3055|hemopoietic cell kinase##BC073748|HCK|3055|hemopoietic cell kinase##BC094847|HCK|3055|hemopoietic cell kinase##BC014435|HCK|3055|hemopoietic cell kinase##NM_080625|C20orf160|140706|chromosome 20 open reading frame 160##AK057090|C20orf160|140706|chromosome 20 open reading frame 160##BC030254|C20orf160|140706|chromosome 20 open reading frame 160##AY534245|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_001011718|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_014742|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK126534|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK294980|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK296500|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK302439|TM9SF4|9777|transmembrane 9 superfamily protein member 4##BC021107|TM9SF4|9777|transmembrane 9 superfamily protein member 4##D87444|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK292450|PLAGL2|5326|pleiomorphic adenoma gene-like 2##D83784|PLAGL2|5326|pleiomorphic adenoma gene-like 2##AF006005|PLAGL2|5326|pleiomorphic adenoma gene-like 2##BC023655|PLAGL2|5326|pleiomorphic adenoma gene-like 2##NM_002657|PLAGL2|5326|pleiomorphic adenoma gene-like 2	1.792023	0.036586	denovo_WM_7:71:0.423	denovo_WM_7:72:0.281	denovo_WM_7:86:0.430	denovo_WM_7:87:0.247	denovo_WM_7:88:0.218
chr4	175458942	175459047	reg1013368.p1	4.448	+	AK300524 NM_000860 NM_001145816	-15203	-	U63296 X82460 BC007691 BC018986 J05594 L76465 AK058013 AK300940 AK314624 AK300125 TSC_hg19_v1_chr4_-_175443639	-15374	-	BC014903 NM_012180 AK123740	-253587	-	U93917 BC036086 NM_001042543 NM_006529	291426	-	NM_001130703 NM_001130704 NM_001130705 NM_014269 AK292410 BC036070	380539	+	CU692222 CU692662 DQ892372 DQ895581 TSC_hg19_v1_chr4_-_176733403	1274399	-	AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##U63296|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##X82460|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC007691|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC018986|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##J05594|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##L76465|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK058013|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300940|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK314624|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300125|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC014903|FBXO8|26269|F-box protein 8##NM_012180|FBXO8|26269|F-box protein 8##AK123740|FBXO8|26269|F-box protein 8##U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3##NM_001130703|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130704|ADAM29|11086|ADAM metallopeptidase domain 29##NM_001130705|ADAM29|11086|ADAM metallopeptidase domain 29##NM_014269|ADAM29|11086|ADAM metallopeptidase domain 29##AK292410|ADAM29|11086|ADAM metallopeptidase domain 29##BC036070|ADAM29|11086|ADAM metallopeptidase domain 29##DQ892372|GPM6A|2823|glycoprotein M6A##DQ895581|GPM6A|2823|glycoprotein M6A	0.996294	0.0	denovo_WM_7:-27:0.494	denovo_WM_7:-30:0.313
chr5	160973751	160973924	reg1008237.p1	4.448	+	AB018258 AK295081 AK090832 AX746642 NM_025153	-694706	-	AK025130 TSC_hg19_v1_chr5_-_160112393	-861498	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-1124934	+	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	1289	-	NM_000811	138820	+	AK289792 NM_000806 AK295160	300404	+	AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6##AK289792|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_000806|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK295160|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1	0.992926	0.0	denovo_WM_7:-19:0.314	denovo_WM_7:-20:0.314	denovo_WM_7:-21:0.314
chr6	19598169	19598311	reg1014430.p1	4.448	+	AK096832 NM_182757 AB076367 BC063311 AL832329	-1210573	+	X64229 TSC_hg19_v1_chr6_-_18264759 BC012442 AK312616 AK298089 AK294079 BC035259 AK297749 NM_001134709 NM_003472	-1333519	-	TSC_hg19_v1_chr6_+_18155652 BC113093 NM_153042 AK125318	-1442585	+	TSC_hg19_v1_chr6_+_19837600 BC014941 NM_001546 U28368 U16153	239395	+	TSC_hg19_v1_chr6_+_19838612 AF085889	240443	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	614432	-	AK096832|RNF144B|255488|ring finger protein 144B##NM_182757|RNF144B|255488|ring finger protein 144B##AB076367|RNF144B|255488|ring finger protein 144B##BC063311|RNF144B|255488|ring finger protein 144B##AL832329|RNF144B|255488|ring finger protein 144B##X64229|DEK|7913|DEK oncogene##BC012442|DEK|7913|DEK oncogene##AK312616|DEK|7913|DEK oncogene##AK298089|DEK|7913|DEK oncogene##AK294079|DEK|7913|DEK oncogene##BC035259|DEK|7913|DEK oncogene##AK297749|DEK|7913|DEK oncogene##NM_001134709|DEK|7913|DEK oncogene##NM_003472|DEK|7913|DEK oncogene##BC113093|KDM1B|221656|lysine (K)-specific demethylase 1B##NM_153042|KDM1B|221656|lysine (K)-specific demethylase 1B##AK125318|KDM1B|221656|lysine (K)-specific demethylase 1B##BC014941|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##NM_001546|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U28368|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##U16153|ID4|3400|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein##BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1	0.0	0.0	
chrX	37646631	37646758	reg1014527.p2	4.448	+	TSC_hg19_v1_chrX_+_37639311 AK304033 AK301491 AK312929 AK301476 X04011 DQ890878 DQ894032	-7379	+	TSC_hg19_v1_chrX_+_37639284 NM_000397 AK289753 BC032720	-7424	+	AY534238 TSC_hg19_v1_chrX_+_37545043 BC036019 NM_021083 Z32684	-101624	+	CR450320 CR542213 TSC_hg19_v1_chrX_-_37706781 GQ129368 GQ129369	60082	-	BC000968 TSC_hg19_v1_chrX_-_37706825 AK311851 U02556 NM_006520	60158	-	AF049615 NM_012274 BC104428 BC104429 BC113024 BC113025	203386	+	AK304033|CYBB|1536|cytochrome b-245, beta polypeptide##AK301491|CYBB|1536|cytochrome b-245, beta polypeptide##AK312929|CYBB|1536|cytochrome b-245, beta polypeptide##AK301476|CYBB|1536|cytochrome b-245, beta polypeptide##X04011|CYBB|1536|cytochrome b-245, beta polypeptide##DQ890878|CYBB|1536|cytochrome b-245, beta polypeptide##DQ894032|CYBB|1536|cytochrome b-245, beta polypeptide##NM_000397|CYBB|1536|cytochrome b-245, beta polypeptide##AK289753|CYBB|1536|cytochrome b-245, beta polypeptide##BC032720|CYBB|1536|cytochrome b-245, beta polypeptide##AY534238|XK|7504|X-linked Kx blood group (McLeod syndrome)##BC036019|XK|7504|X-linked Kx blood group (McLeod syndrome)##NM_021083|XK|7504|X-linked Kx blood group (McLeod syndrome)##Z32684|XK|7504|X-linked Kx blood group (McLeod syndrome)##CR450320|DYNLT3|6990|dynein, light chain, Tctex-type 3##CR542213|DYNLT3|6990|dynein, light chain, Tctex-type 3##GQ129368|DYNLT3|6990|dynein, light chain, Tctex-type 3##GQ129369|DYNLT3|6990|dynein, light chain, Tctex-type 3##BC000968|DYNLT3|6990|dynein, light chain, Tctex-type 3##AK311851|DYNLT3|6990|dynein, light chain, Tctex-type 3##U02556|DYNLT3|6990|dynein, light chain, Tctex-type 3##NM_006520|DYNLT3|6990|dynein, light chain, Tctex-type 3##AF049615|CXorf27|25763|chromosome X open reading frame 27##NM_012274|CXorf27|25763|chromosome X open reading frame 27##BC104428|CXorf27|25763|chromosome X open reading frame 27##BC104429|CXorf27|25763|chromosome X open reading frame 27##BC113024|CXorf27|25763|chromosome X open reading frame 27##BC113025|CXorf27|25763|chromosome X open reading frame 27	0.0	0.0	
chr12	51632615	51632754	reg1012472.p1	4.447	+	TSC_hg19_v1_chr12_+_51632658 AB385271 CU677910 AK125855	-12	+	TSC_hg19_v1_chr12_+_51632650 D31767 BC002334 BC007900 AK095963	-49	+	TSC_hg19_v1_chr12_+_51632609 AK303828 AK290119 AK293330 AY430097 BX647278	-85	+	BC120965 BC120966 BC008712 TSC_hg19_v1_chr12_-_51663988 NM_001033873 BC001400 AK001839 NM_001031628	31401	-	TSC_hg19_v1_chr12_-_51717901 CU690454 AF146531	85184	-	TSC_hg19_v1_chr12_-_51717911 AK093638 AB032698 AK000783 AK225911 NM_016293	85237	-	AK125855|DAZAP2|9802|DAZ associated protein 2##D31767|DAZAP2|9802|DAZ associated protein 2##BC002334|DAZAP2|9802|DAZ associated protein 2##BC007900|DAZAP2|9802|DAZ associated protein 2##AK095963|DAZAP2|9802|DAZ associated protein 2##AK303828|DAZAP2|9802|DAZ associated protein 2##AK290119|DAZAP2|9802|DAZ associated protein 2##AK293330|DAZAP2|9802|DAZ associated protein 2##AY430097|DAZAP2|9802|DAZ associated protein 2##BX647278|DAZAP2|9802|DAZ associated protein 2##BC120965|SMAGP|57228|small cell adhesion glycoprotein##BC120966|SMAGP|57228|small cell adhesion glycoprotein##BC008712|SMAGP|57228|small cell adhesion glycoprotein##NM_001033873|SMAGP|57228|small cell adhesion glycoprotein##BC001400|SMAGP|57228|small cell adhesion glycoprotein##AK001839|SMAGP|57228|small cell adhesion glycoprotein##NM_001031628|SMAGP|57228|small cell adhesion glycoprotein##AF146531|BIN2|51411|bridging integrator 2##AK093638|BIN2|51411|bridging integrator 2##AB032698|BIN2|51411|bridging integrator 2##AK000783|BIN2|51411|bridging integrator 2##AK225911|BIN2|51411|bridging integrator 2##NM_016293|BIN2|51411|bridging integrator 2	0.0	0.0	
chr19	36407054	36407129	reg1007399.p2	4.447	+	TSC_hg19_v1_chr19_-_36399212 NM_001173514 NM_001173515 NM_003332 NM_198125	-7878	-	TSC_hg19_v1_chr19_-_36399198 AF019562 BC011175 AK290385	-7899	-	TSC_hg19_v1_chr19_-_36399181 BT009851 CR450342 CR542202 AB590208 AY074782 CU679890 DQ891092 DQ894274 AJ010098	-7941	-	BC003578 NM_024509	20930	+	TSC_hg19_v1_chr19_+_36486091 NM_001042631 BC007205 BC064605 BC069054 BC137516 BC137517	79003	+	CU690916 AK093764 AX748293 NM_001039876 BC052573 BC038360	92547	-	NM_001173514|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_001173515|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_003332|TYROBP|7305|TYRO protein tyrosine kinase binding protein##NM_198125|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AF019562|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC011175|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AK290385|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BT009851|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR450342|TYROBP|7305|TYRO protein tyrosine kinase binding protein##CR542202|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AY074782|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ891092|TYROBP|7305|TYRO protein tyrosine kinase binding protein##DQ894274|TYROBP|7305|TYRO protein tyrosine kinase binding protein##AJ010098|TYROBP|7305|TYRO protein tyrosine kinase binding protein##BC003578|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_024509|LRFN3|79414|leucine rich repeat and fibronectin type III domain containing 3##NM_001042631|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC007205|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC064605|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC069054|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137516|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##BC137517|SDHAF1|644096|succinate dehydrogenase complex assembly factor 1##AK093764|C19orf46|163183|chromosome 19 open reading frame 46##NM_001039876|C19orf46|163183|chromosome 19 open reading frame 46##BC052573|C19orf46|163183|chromosome 19 open reading frame 46##BC038360|C19orf46|163183|chromosome 19 open reading frame 46	1.975776	0.0	denovo_WM_7:43:0.967	denovo_WM_7:59:0.494	denovo_WM_7:60:0.497
chr21	34576410	34576590	reg1002219.p1	4.447	+	TSC_hg19_v1_chr21_+_34444006 BC011252	-132455	+	TSC_hg19_v1_chr21_+_34442554 AB463154 DQ896828 BC026989	-133939	+	TSC_hg19_v1_chr21_+_34442446 BC033290 NM_138983 AL834450 AB209791	-134048	+	BC002793 NM_000874 NM_207584 NM_207585 TSC_hg19_v1_chr21_+_34602236	25720	+	TSC_hg19_v1_chr21_+_34602281 L41942 L41944	25779	+	TSC_hg19_v1_chr21_+_34602305 BC013156 X77722 X89814 U29584	25902	+	BC011252|OLIG1|116448|oligodendrocyte transcription factor 1##DQ896828|OLIG1|116448|oligodendrocyte transcription factor 1##BC026989|OLIG1|116448|oligodendrocyte transcription factor 1##BC033290|OLIG1|116448|oligodendrocyte transcription factor 1##NM_138983|OLIG1|116448|oligodendrocyte transcription factor 1##AL834450|OLIG1|116448|oligodendrocyte transcription factor 1##AB209791|OLIG1|116448|oligodendrocyte transcription factor 1##BC002793|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_000874|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##NM_207585|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41942|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##L41944|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##BC013156|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X77722|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##X89814|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2##U29584|IFNAR2|3455|interferon (alpha, beta and omega) receptor 2	0.0	0.0	
chr2	158007425	158007605	reg1011669.p1	4.447	+	TSC_hg19_v1_chr2_+_157292921 U12424 BC019874	-714561	+	TSC_hg19_v1_chr2_+_157292894 NM_000408 AK292817	-714649	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	-715281	+	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	106778	+	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	174769	-	NM_001009959 AK296477	176641	-	U12424|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC019874|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_000408|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK292817|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein	0.037827	0.0	
chr10	43922668	43922847	reg1008258.p1	4.446	+	TSC_hg19_v1_chr10_-_43904631 BC015580 BC004254 AK296696 NM_004966 NM_001098204	-18111	-	TSC_hg19_v1_chr10_-_43904306 AK001364 NM_001098205	-18439	-	TSC_hg19_v1_chr10_-_43903224 BC016736 NM_001098206	-19498	-	AK302442 TSC_hg19_v1_chr10_+_43932667	9863	+	NM_005674 X82125	141149	-	BC026030 X82128 AK292013 NM_001099282 NM_001099283 NM_001099284	147279	-	BC015580|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC004254|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK296696|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_004966|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098204|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK001364|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098205|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC016736|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098206|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK302442|ZNF487P|642819|zinc finger protein 487, pseudogene##NM_005674|ZNF239|8187|zinc finger protein 239##X82125|ZNF239|8187|zinc finger protein 239##BC026030|ZNF239|8187|zinc finger protein 239##X82128|ZNF239|8187|zinc finger protein 239##AK292013|ZNF239|8187|zinc finger protein 239##NM_001099282|ZNF239|8187|zinc finger protein 239##NM_001099283|ZNF239|8187|zinc finger protein 239##NM_001099284|ZNF239|8187|zinc finger protein 239	0.989702	0.0	denovo_WM_7:6:0.236	denovo_WM_7:7:0.236	denovo_WM_7:8:0.236	denovo_WM_7:9:0.236
chr11	62120236	62120399	reg1009886.p2	4.446	+	TSC_hg19_v1_chr11_+_62104919 AK313069 AK091894 AX747239 AK297158 AK090908 AX746674 AK309845 BC064963 BC093070 AF411076 BC021295 AK225802	-15369	+	NM_001083926 NM_025080 TSC_hg19_v1_chr11_+_62104878	-15492	+	HQ258026 AY236538 BC130639 BC130645 AY359052 NM_206998	-53808	-	AK312165 NM_003357 BC004481 U01101 DQ893375 DQ896769 X13197 AB590371 CR541780	66219	+	TSC_hg19_v1_chr11_-_62314221 BC012477 BC000926 AK095346	193919	-	TSC_hg19_v1_chr11_-_62314314 AK300376 BC128460 NM_001620 NM_024060	193997	-	AK313069|ASRGL1|80150|asparaginase like 1##AK091894|ASRGL1|80150|asparaginase like 1##AK297158|ASRGL1|80150|asparaginase like 1##AK090908|ASRGL1|80150|asparaginase like 1##AK309845|ASRGL1|80150|asparaginase like 1##BC064963|ASRGL1|80150|asparaginase like 1##BC093070|ASRGL1|80150|asparaginase like 1##AF411076|ASRGL1|80150|asparaginase like 1##BC021295|ASRGL1|80150|asparaginase like 1##AK225802|ASRGL1|80150|asparaginase like 1##NM_001083926|ASRGL1|80150|asparaginase like 1##NM_025080|ASRGL1|80150|asparaginase like 1##HQ258026|SCGB1D4|404552|secretoglobin, family 1D, member 4##AY236538|SCGB1D4|404552|secretoglobin, family 1D, member 4##BC130639|SCGB1D4|404552|secretoglobin, family 1D, member 4##BC130645|SCGB1D4|404552|secretoglobin, family 1D, member 4##AY359052|SCGB1D4|404552|secretoglobin, family 1D, member 4##NM_206998|SCGB1D4|404552|secretoglobin, family 1D, member 4##AK312165|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##NM_003357|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC004481|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##U01101|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ893375|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ896769|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##X13197|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##CR541780|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC012477|AHNAK|79026|AHNAK nucleoprotein##BC000926|AHNAK|79026|AHNAK nucleoprotein##AK095346|AHNAK|79026|AHNAK nucleoprotein##AK300376|AHNAK|79026|AHNAK nucleoprotein##BC128460|AHNAK|79026|AHNAK nucleoprotein##NM_001620|AHNAK|79026|AHNAK nucleoprotein##NM_024060|AHNAK|79026|AHNAK nucleoprotein	0.0	0.0	
chr5	130598597	130598718	reg1009483.p1	4.446	+	TSC_hg19_v1_chr5_+_130506676 BC037930 BC047079	-91986	+	AK000803 NM_181705 TSC_hg19_v1_chr5_+_130506648	-92014	+	TSC_hg19_v1_chr5_-_130501019 NM_005340	-97614	-	NM_001038702 NM_020240 TSC_hg19_v1_chr5_+_130599737	1064	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	1099	+	AK312406 TSC_hg19_v1_chr5_+_130599768	1111	+	BC037930|LYRM7|90624|Lyrm7 homolog (mouse)##BC047079|LYRM7|90624|Lyrm7 homolog (mouse)##AK000803|LYRM7|90624|Lyrm7 homolog (mouse)##NM_181705|LYRM7|90624|Lyrm7 homolog (mouse)##NM_005340|HINT1|3094|histidine triad nucleotide binding protein 1##NM_001038702|CDC42SE2|56990|CDC42 small effector 2##NM_020240|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2	0.997256	0.0	denovo_WM_7:-2:0.896
chr9	140045762	140045870	reg1002633.p4	4.446	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	-12038	+	TSC_hg19_v1_chr9_+_140032795 L13266	-13009	+	TSC_hg19_v1_chr9_-_140024189 BC018639	-21581	-	TSC_hg19_v1_chr9_-_140063880 EU588721	18066	-	DQ355157 BC140911 TSC_hg19_v1_chr9_-_140064504 NM_001013653	18649	-	AF191337 DQ890852 DQ894007 BC032503 AK296204 TSC_hg19_v1_chr9_-_140083009	37180	-	NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##DQ355157|LRRC26|389816|leucine rich repeat containing 26##BC140911|LRRC26|389816|leucine rich repeat containing 26##NM_001013653|LRRC26|389816|leucine rich repeat containing 26##AF191337|ANAPC2|29882|anaphase promoting complex subunit 2##DQ890852|ANAPC2|29882|anaphase promoting complex subunit 2##DQ894007|ANAPC2|29882|anaphase promoting complex subunit 2##BC032503|ANAPC2|29882|anaphase promoting complex subunit 2##AK296204|ANAPC2|29882|anaphase promoting complex subunit 2	0.0	0.0	
chr10	107592216	107592346	reg1008965.p2	4.445	+	BC117417 TSC_hg19_v1_chr10_+_106401047	-1191236	+	AB028982 NM_014978	-1191423	+	TSC_hg19_v1_chr10_+_106113521 BC036225 NM_001008723 BX641120 AK093227 AX748000 BC109126	-1478740	+	TSC_hg19_v1_chr10_-_108459000 AK123752	866778	-	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	1332095	-	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	4090928	-	BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##AB028982|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##NM_014978|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC036225|CCDC147|159686|coiled-coil domain containing 147##NM_001008723|CCDC147|159686|coiled-coil domain containing 147##BX641120|CCDC147|159686|coiled-coil domain containing 147##AK093227|CCDC147|159686|coiled-coil domain containing 147##BC109126|CCDC147|159686|coiled-coil domain containing 147##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	1.985415	0.0	denovo_WM_7:-21:0.246	denovo_WM_7:-24:0.435	denovo_WM_7:-39:0.621
chr18	4004573	4004719	reg1010868.p2	4.445	+	AK294777 AK294717 NM_001242762 NM_001242763	-129919	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-130362	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-159316	-	AK304101 TSC_hg19_v1_chr18_-_4455255	450607	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	450624	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	1192606	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.972276	0.0	denovo_WM_7:-77:0.329	denovo_WM_7:-81:0.377
chr5	23991700	23991819	reg1010119.p1	4.445	+	DQ388610 NM_020227 AK301776	-484016	+	L33477 NM_004061	-1138029	-	BC047608 TSC_hg19_v1_chr5_-_22853454	-1138313	-	NM_006727	653325	-	BC107594 BC109384 BC113745 AB035302 AK307779 NM_016279 AK308697	3046912	-	TSC_hg19_v1_chr5_+_27472410 BC039509 BC046201 BC101438 BC101441 BC101982 BC122523	3480644	+	DQ388610|PRDM9|56979|PR domain containing 9##NM_020227|PRDM9|56979|PR domain containing 9##AK301776|PRDM9|56979|PR domain containing 9##L33477|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_004061|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##BC047608|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_006727|CDH10|1008|cadherin 10, type 2 (T2-cadherin)##BC107594|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC109384|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC113745|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AB035302|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK307779|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_016279|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK308697|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC039509|LOC643401|643401|uncharacterized LOC643401##BC046201|LOC643401|643401|uncharacterized LOC643401##BC101438|LOC643401|643401|uncharacterized LOC643401##BC101982|LOC643401|643401|uncharacterized LOC643401##BC122523|LOC643401|643401|uncharacterized LOC643401	0.99174	0.0	denovo_WM_7:49:0.331	denovo_WM_7:50:0.331	denovo_WM_7:51:0.331
chrX	153166238	153166387	reg1000619.p1	4.445	+	TSC_hg19_v1_chrX_-_153151599 BC021858	-14710	-	NM_000425 NM_001143963 NM_024003 BC126229 BC136447 TSC_hg19_v1_chrX_-_153141452	-24861	-	AB102653 EF506611 X59847 M74387 M77640 AK289754 TSC_hg19_v1_chrX_-_153141346	-24997	-	NM_000054 NM_001146151 Z11687 AF030626 AF032388 AF101727 AF101728 BC101484 BC112181 AB527584 AY242131	4251	+	D50921 AM392626 AM393222 AB384442 TSC_hg19_v1_chrX_-_153191680	25350	-	TSC_hg19_v1_chrX_-_153191700 AY183123 X78817	25381	-	NM_000425|L1CAM|3897|L1 cell adhesion molecule##NM_001143963|L1CAM|3897|L1 cell adhesion molecule##NM_024003|L1CAM|3897|L1 cell adhesion molecule##BC126229|L1CAM|3897|L1 cell adhesion molecule##BC136447|L1CAM|3897|L1 cell adhesion molecule##AB102653|L1CAM|3897|L1 cell adhesion molecule##EF506611|L1CAM|3897|L1 cell adhesion molecule##X59847|L1CAM|3897|L1 cell adhesion molecule##M74387|L1CAM|3897|L1 cell adhesion molecule##M77640|L1CAM|3897|L1 cell adhesion molecule##AK289754|L1CAM|3897|L1 cell adhesion molecule##NM_000054|AVPR2|554|arginine vasopressin receptor 2##NM_001146151|AVPR2|554|arginine vasopressin receptor 2##Z11687|AVPR2|554|arginine vasopressin receptor 2##AF030626|AVPR2|554|arginine vasopressin receptor 2##AF032388|AVPR2|554|arginine vasopressin receptor 2##AF101727|AVPR2|554|arginine vasopressin receptor 2##AF101728|AVPR2|554|arginine vasopressin receptor 2##BC101484|AVPR2|554|arginine vasopressin receptor 2##BC112181|AVPR2|554|arginine vasopressin receptor 2##AY242131|AVPR2|554|arginine vasopressin receptor 2##D50921|ARHGAP4|393|Rho GTPase activating protein 4##AM392626|ARHGAP4|393|Rho GTPase activating protein 4##AM393222|ARHGAP4|393|Rho GTPase activating protein 4##AY183123|ARHGAP4|393|Rho GTPase activating protein 4##X78817|ARHGAP4|393|Rho GTPase activating protein 4	0.808419	0.0	denovo_WM_7:-1:0.702
chr11	69006756	69006863	reg1002748.p2	4.444	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-149283	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-190383	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-190459	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	54813	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	449047	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	449101	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	0.719919	0.0	denovo_WM_7:-51:0.707
chr19	2269318	2269470	reg1011633.p1	4.444	+	AK056978 NM_144616	-12976	-	NM_000479	-20282	+	NM_007165 TSC_hg19_v1_chr19_+_2236834 AK314815 BC009903 BC041763 BC004434 BC015804	-32556	+	TSC_hg19_v1_chr19_+_2269523 AK307221 NM_004152 AK309122	126	+	TSC_hg19_v1_chr19_+_2269526 BC042364	132	+	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	148	+	AK056978|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_144616|JSRP1|126306|junctional sarcoplasmic reticulum protein 1##NM_000479|AMH|268|anti-Mullerian hormone##NM_007165|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK314815|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC009903|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC004434|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##BC015804|SF3A2|8175|splicing factor 3a, subunit 2, 66kDa##AK307221|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_004152|OAZ1|4946|ornithine decarboxylase antizyme 1##AK309122|SPPL2B|56928|signal peptide peptidase-like 2B##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1	0.0	0.0	
chr20	43013151	43013331	reg1013146.p1	4.444	+	TSC_hg19_v1_chr20_+_42984338 AY680696 AY680697 AY680698 NM_001030003 NM_001030004 NM_175914 FJ608822 HQ692868	-28850	+	TSC_hg19_v1_chr20_+_42984088 AK096973	-29148	+	NM_178491	-47616	+	TSC_hg19_v1_chr20_-_43024303 AF143870	11083	-	TSC_hg19_v1_chr20_+_43029888 Z49825 NM_000457 NM_178849 NM_178850	16653	+	X87872 X87870 TSC_hg19_v1_chr20_+_43029954 X87871	16705	+	AY680696|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680697|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680698|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_001030003|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_001030004|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_175914|HNF4A|3172|hepatocyte nuclear factor 4, alpha##FJ608822|HNF4A|3172|hepatocyte nuclear factor 4, alpha##HQ692868|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AK096973|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_178491|R3HDML|140902|R3H domain containing-like##Z49825|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_000457|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_178849|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_178850|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X87872|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X87870|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X87871|HNF4A|3172|hepatocyte nuclear factor 4, alpha	0.0	0.507392	CTCF.p2:-49:0.507
chr22	35793813	35793923	reg1010785.p2	4.444	+	AF051791 TSC_hg19_v1_chr22_+_35779219	-14706	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	-16742	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	-16800	+	TSC_hg19_v1_chr22_+_35796134 NM_006739 AK223323 AK301121 D83986 AK130620 AK291136 AK298624 AK122853 AK312533	2257	+	TSC_hg19_v1_chr22_+_35796157 BC000142 AK308343 CR456517 X74795 BC003656	2303	+	TSC_hg19_v1_chr22_+_35796295 AB463121 CU013117 CU013405 CU674060 CU678562	2494	+	AF051791|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##NM_006739|MCM5|4174|minichromosome maintenance complex component 5##AK223323|MCM5|4174|minichromosome maintenance complex component 5##AK301121|MCM5|4174|minichromosome maintenance complex component 5##D83986|MCM5|4174|minichromosome maintenance complex component 5##AK130620|MCM5|4174|minichromosome maintenance complex component 5##AK291136|MCM5|4174|minichromosome maintenance complex component 5##AK298624|MCM5|4174|minichromosome maintenance complex component 5##AK122853|MCM5|4174|minichromosome maintenance complex component 5##AK312533|MCM5|4174|minichromosome maintenance complex component 5##BC000142|MCM5|4174|minichromosome maintenance complex component 5##AK308343|MCM5|4174|minichromosome maintenance complex component 5##CR456517|MCM5|4174|minichromosome maintenance complex component 5##X74795|MCM5|4174|minichromosome maintenance complex component 5##BC003656|MCM5|4174|minichromosome maintenance complex component 5##CU013117|MCM5|4174|minichromosome maintenance complex component 5##CU013405|MCM5|4174|minichromosome maintenance complex component 5	1.226768	0.0	denovo_WM_7:71:0.211	denovo_WM_7:86:0.822
chr2	39719216	39719385	reg1008323.p1	4.444	+	TSC_hg19_v1_chr2_+_39664565 AK095178	-54730	+	TSC_hg19_v1_chr2_-_39664438 BC071579	-54832	-	TSC_hg19_v1_chr2_-_39664420 AK291467	-54914	-	NM_001167959	173337	+	TSC_hg19_v1_chr2_+_39893056 NM_152390 AK075440 BC029530 AY358773 DQ890996	173767	+	TSC_hg19_v1_chr2_-_40006399 CU678598 EU831465 EU831552 AK301353 AK298178 AK226034 BC004163 BC013299 AK307754 AL832115 AK093580 AX748213 AK292002	286994	-	AK095178|LOC728730|728730|uncharacterized LOC728730##BC071579|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##AK291467|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##NM_001167959|TMEM178|130733|transmembrane protein 178##NM_152390|TMEM178|130733|transmembrane protein 178##AK075440|TMEM178|130733|transmembrane protein 178##BC029530|TMEM178|130733|transmembrane protein 178##AY358773|TMEM178|130733|transmembrane protein 178##DQ890996|TMEM178|130733|transmembrane protein 178##EU831465|THUMPD2|80745|THUMP domain containing 2##EU831552|THUMPD2|80745|THUMP domain containing 2##AK301353|THUMPD2|80745|THUMP domain containing 2##AK298178|THUMPD2|80745|THUMP domain containing 2##AK226034|THUMPD2|80745|THUMP domain containing 2##BC004163|THUMPD2|80745|THUMP domain containing 2##BC013299|THUMPD2|80745|THUMP domain containing 2##AK307754|THUMPD2|80745|THUMP domain containing 2##AL832115|THUMPD2|80745|THUMP domain containing 2##AK093580|THUMPD2|80745|THUMP domain containing 2##AK292002|THUMPD2|80745|THUMP domain containing 2	0.0	0.0	
chr7	23302105	23302285	reg1013651.p2	4.444	+	AF322909 TSC_hg19_v1_chr7_+_23286426 BC025297 BC011595 CU679974 CU689536 AB528457 DQ892084 DQ895277 BT007074	-15747	+	TSC_hg19_v1_chr7_+_23286407 AJ505015	-15790	+	TSC_hg19_v1_chr7_+_23286393 AK292078 AK296779 AK297031 AK297803 AY359124 BC032783	-15801	+	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	36770	+	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	207484	-	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	207803	-	AF322909|GPNMB|10457|glycoprotein (transmembrane) nmb##BC025297|GPNMB|10457|glycoprotein (transmembrane) nmb##BC011595|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ892084|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ895277|GPNMB|10457|glycoprotein (transmembrane) nmb##BT007074|GPNMB|10457|glycoprotein (transmembrane) nmb##AJ505015|GPNMB|10457|glycoprotein (transmembrane) nmb##AK292078|GPNMB|10457|glycoprotein (transmembrane) nmb##AK296779|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297031|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297803|GPNMB|10457|glycoprotein (transmembrane) nmb##AY359124|GPNMB|10457|glycoprotein (transmembrane) nmb##BC032783|GPNMB|10457|glycoprotein (transmembrane) nmb##BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	1.967365	0.0	denovo_WM_7:38:0.934	denovo_WM_7:53:0.947
chr10	104401791	104401904	reg1009794.p1	4.443	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-138028	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-138128	+	CU674342 AM393135 DQ892689 DQ895934 AB462953 BC026016 TSC_hg19_v1_chr10_-_104262470 BC000693 Z14978 X82206 AK302072 AK312506 AK297362 AK297620 NM_005736	-139390	-	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	2437	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	72250	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	72498	+	AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##AM393135|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ892689|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ895934|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC026016|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC000693|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##Z14978|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##X82206|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK302072|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK312506|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297362|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297620|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_005736|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2	0.0	0.0	
chr10	14423963	14424039	reg1011770.p2	4.443	+	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	-51151	-	TSC_hg19_v1_chr10_-_14050453 AK001072	-373509	-	TSC_hg19_v1_chr10_-_13749648 AK057828	-674312	-	TSC_hg19_v1_chr10_-_14646259 BC064407	222316	-	TSC_hg19_v1_chr10_-_14646423 BC072452	222428	-	AK127413 NM_031453	392894	-	AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##AK001072|FRMD4A|55691|FERM domain containing 4A##AK057828|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B##BC072452|FAM107B|83641|family with sequence similarity 107, member B##AK127413|FAM107B|83641|family with sequence similarity 107, member B##NM_031453|FAM107B|83641|family with sequence similarity 107, member B	0.0	0.0	
chr1	156571330	156571510	reg1011767.p1	4.443	+	AB528795 BC032436 TSC_hg19_v1_chr1_-_156571275 BC040147 AK125763 BC056904 AK000256 AK293026 AK301232 NM_015590 NM_182679	-163	-	TSC_hg19_v1_chr1_+_156561594 AK316083	-9818	+	TSC_hg19_v1_chr1_+_156561567 AK294835 AK298222 BC056917 NM_144772 AJ315849 BC100931 BC100932 BC100933 BC100934	-9865	+	AB049054 NM_021817 AK294131 AK310758 AK308805 AK090712 AK308980 AK293797 BC029864	17766	+	TSC_hg19_v1_chr1_+_156611723 AY358372 NM_021948 NM_198427	40309	+	TSC_hg19_v1_chr1_+_156611908 AK289759 BC029348 AY007241 BC022938 BC027971 BC035457 BC009117 BC010571 AF228710 AF229053	40534	+	BC032436|GPATCH4|54865|G patch domain containing 4##BC040147|GPATCH4|54865|G patch domain containing 4##AK125763|GPATCH4|54865|G patch domain containing 4##BC056904|GPATCH4|54865|G patch domain containing 4##AK000256|GPATCH4|54865|G patch domain containing 4##AK293026|GPATCH4|54865|G patch domain containing 4##AK301232|GPATCH4|54865|G patch domain containing 4##NM_015590|GPATCH4|54865|G patch domain containing 4##NM_182679|GPATCH4|54865|G patch domain containing 4##AK294835|APOA1BP|128240|apolipoprotein A-I binding protein##AK298222|APOA1BP|128240|apolipoprotein A-I binding protein##BC056917|APOA1BP|128240|apolipoprotein A-I binding protein##NM_144772|APOA1BP|128240|apolipoprotein A-I binding protein##AJ315849|APOA1BP|128240|apolipoprotein A-I binding protein##BC100931|APOA1BP|128240|apolipoprotein A-I binding protein##BC100932|APOA1BP|128240|apolipoprotein A-I binding protein##BC100933|APOA1BP|128240|apolipoprotein A-I binding protein##BC100934|APOA1BP|128240|apolipoprotein A-I binding protein##AB049054|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##NM_021817|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK294131|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK310758|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK308805|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK090712|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK308980|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK293797|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##BC029864|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AY358372|BCAN|63827|brevican##NM_021948|BCAN|63827|brevican##NM_198427|BCAN|63827|brevican##AK289759|BCAN|63827|brevican##BC029348|BCAN|63827|brevican##AY007241|BCAN|63827|brevican##BC022938|BCAN|63827|brevican##BC027971|BCAN|63827|brevican##BC035457|BCAN|63827|brevican##BC009117|BCAN|63827|brevican##BC010571|BCAN|63827|brevican##AF228710|BCAN|63827|brevican##AF229053|BCAN|63827|brevican	0.0	0.0	
chr17	47420930	47421086	reg1011024.p1	4.442	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-112865	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-132931	+	NM_001198754	-133073	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	18572	-	BC095460 TSC_hg19_v1_chr17_-_47492215	71207	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	71240	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	0.999148	0.0	denovo_WM_7:19:0.739
chr17	75440810	75440956	reg1010951.p2	4.442	+	AB023208 NM_001113494 AJ312322	-68714	+	TSC_hg19_v1_chr17_+_75369418 AK304143	-71458	+	TSC_hg19_v1_chr17_+_75369236 AJ312319 NM_001113493	-71630	+	NM_001113496 TSC_hg19_v1_chr17_+_75446637	5762	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	5899	+	AK299828 TSC_hg19_v1_chr17_+_75447450	6506	+	AB023208|SEPT9|10801|septin 9##NM_001113494|SEPT9|10801|septin 9##AJ312322|SEPT9|10801|septin 9##AK304143|SEPT9|10801|septin 9##AJ312319|SEPT9|10801|septin 9##NM_001113493|SEPT9|10801|septin 9##NM_001113496|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9	0.0	0.164746	
chr19	7194831	7194897	reg1011300.p2	4.442	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-95313	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-125149	+	AK315405 NM_001044387 NM_001044388 NM_024341	-125402	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	99096	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	265143	+	TSC_hg19_v1_chr19_+_7460061 AB011093	265213	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.97665	0.0	denovo_WM_7:9:0.815
chr22	33027290	33027405	reg1011903.p1	4.442	+	NM_001033024 TSC_hg19_v1_chr22_+_32871279 AK297841 AK301716	-156067	+	TSC_hg19_v1_chr22_+_32870997 BX648151 BX648220	-156346	+	TSC_hg19_v1_chr22_+_32870950 AK291972 AF233225 AB385082 AM392740 CU013088 CU013376 EU176789 EU176790	-156387	+	NM_000362	169454	+	TSC_hg19_v1_chr22_+_33197690 AK311702 AK314871 AK298126 BC013086 U14394 AX801509 U02571 S78453 U67195	170347	+	BC014277 TSC_hg19_v1_chr22_+_33197759	170405	+	NM_001033024|FBXO7|25793|F-box protein 7##AK297841|FBXO7|25793|F-box protein 7##AK301716|FBXO7|25793|F-box protein 7##BX648151|FBXO7|25793|F-box protein 7##BX648220|FBXO7|25793|F-box protein 7##AK291972|FBXO7|25793|F-box protein 7##AF233225|FBXO7|25793|F-box protein 7##AM392740|FBXO7|25793|F-box protein 7##CU013088|FBXO7|25793|F-box protein 7##CU013376|FBXO7|25793|F-box protein 7##EU176789|FBXO7|25793|F-box protein 7##EU176790|FBXO7|25793|F-box protein 7##NM_000362|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AK314871|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AK298126|TIMP3|7078|TIMP metallopeptidase inhibitor 3##BC013086|TIMP3|7078|TIMP metallopeptidase inhibitor 3##U14394|TIMP3|7078|TIMP metallopeptidase inhibitor 3##U02571|TIMP3|7078|TIMP metallopeptidase inhibitor 3##S78453|TIMP3|7078|TIMP metallopeptidase inhibitor 3##U67195|TIMP3|7078|TIMP metallopeptidase inhibitor 3##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3	0.992288	0.0	denovo_WM_7:-42:0.496	denovo_WM_7:-43:0.496
chr2	75194365	75194545	reg1013569.p2	4.442	+	TSC_hg19_v1_chr2_+_75185771 NM_019896 BC031331	-8670	+	TSC_hg19_v1_chr2_-_75062285 BC013295	-132204	-	TSC_hg19_v1_chr2_+_75061273 AF148513 BC021116 BC064369 AK290357	-133195	+	AK289765 NM_001058 NM_015727	232173	-	BC016157 TSC_hg19_v1_chr2_-_75788066	593592	-	TSC_hg19_v1_chr2_-_75788091 NM_001135032	593635	-	NM_019896|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC031331|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##AF148513|HK2|3099|hexokinase 2##BC021116|HK2|3099|hexokinase 2##BC064369|HK2|3099|hexokinase 2##AK290357|HK2|3099|hexokinase 2##AK289765|TACR1|6869|tachykinin receptor 1##NM_001058|TACR1|6869|tachykinin receptor 1##NM_015727|TACR1|6869|tachykinin receptor 1##BC016157|FAM176A|84141|family with sequence similarity 176, member A##NM_001135032|FAM176A|84141|family with sequence similarity 176, member A	1.92792	0.0	denovo_WM_7:0:0.455	denovo_WM_7:-2:0.288	denovo_WM_7:74:0.930
chr3	194929099	194929252	reg1010864.p1	4.442	+	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-521672	+	TSC_hg19_v1_chr3_+_194406619 NM_153690	-522552	+	NM_018385	-535970	-	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	62675	-	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	234527	-	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	340938	-	BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##NM_018385|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2	0.067403	0.0	
chr1	185375942	185376060	reg1011426.p1	4.441	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-89531	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-89682	-	TSC_hg19_v1_chr1_+_185126418 AK291443	-249605	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	327575	+	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	889406	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	968256	-	NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##AK291443|SWT1|54823|SWT1 RNA endoribonuclease homolog (S. cerevisiae)##AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)	0.0	0.0	
chr2	131862103	131862209	reg1011390.p2	4.441	+	TSC_hg19_v1_chr2_-_131851008 BC066347 BC110642 NM_001009993	-11158	-	AF249745 NM_015320 NM_032995	-187933	+	TSC_hg19_v1_chr2_+_131513793 NM_001105194 NM_001105195	-348334	+	AK126289 NM_001100623 NM_017958	263	+	TSC_hg19_v1_chr2_+_131862874 AK302770	715	+	TSC_hg19_v1_chr2_+_131862905 AK000790 AK223338 AK293880 AK296008 BC050695 BC001428 BC013991	753	+	BC066347|FAM168B|130074|family with sequence similarity 168, member B##BC110642|FAM168B|130074|family with sequence similarity 168, member B##NM_001009993|FAM168B|130074|family with sequence similarity 168, member B##AF249745|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_015320|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_032995|ARHGEF4|50649|Rho guanine nucleotide exchange factor (GEF) 4##NM_001105194|FAM123C|205147|family with sequence similarity 123C##NM_001105195|FAM123C|205147|family with sequence similarity 123C##AK126289|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_001100623|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##NM_017958|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK302770|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK000790|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK223338|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK293880|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##AK296008|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##BC050695|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##BC001428|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2##BC013991|PLEKHB2|55041|pleckstrin homology domain containing, family B (evectins) member 2	0.0	0.0	
chr8	19373171	19373278	reg1013442.p1	4.441	+	TSC_hg19_v1_chr8_+_19171505 NM_001174160 NM_022071 AK024799 AK293301 BC082982 NM_001174159	-201941	+	TSC_hg19_v1_chr8_-_18871214 AK091317 AX746913 NM_015310	-501938	-	GU727648 TSC_hg19_v1_chr8_-_18871128	-502112	-	BX649103 NM_001130518	86806	-	AY358441 NM_018371	166869	-	AK314625 TSC_hg19_v1_chr8_-_19615422	242193	-	NM_001174160|SH2D4A|63898|SH2 domain containing 4A##NM_022071|SH2D4A|63898|SH2 domain containing 4A##AK024799|SH2D4A|63898|SH2 domain containing 4A##AK293301|SH2D4A|63898|SH2 domain containing 4A##BC082982|SH2D4A|63898|SH2 domain containing 4A##NM_001174159|SH2D4A|63898|SH2 domain containing 4A##AK091317|PSD3|23362|pleckstrin and Sec7 domain containing 3##NM_015310|PSD3|23362|pleckstrin and Sec7 domain containing 3##GU727648|PSD3|23362|pleckstrin and Sec7 domain containing 3##BX649103|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_001130518|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##AY358441|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##NM_018371|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1##AK314625|CSGALNACT1|55790|chondroitin sulfate N-acetylgalactosaminyltransferase 1	0.982447	0.0	denovo_WM_7:11:0.961
chr13	49068961	49069080	reg1013015.p1	4.440	+	TSC_hg19_v1_chr13_+_49050586 AK307125	-18430	+	BC039373 BC045651 NM_005767	-50200	-	AK122856 NM_001162497	-67978	-	TSC_hg19_v1_chr13_-_49107217 BC029052 AK298438 AK301516 AK304598	38181	-	TSC_hg19_v1_chr13_-_49107219 AK310081	38202	-	TSC_hg19_v1_chr13_-_49107313 AK315703 NM_001268	38269	-	AK307125|RB1|5925|retinoblastoma 1##BC039373|LPAR6|10161|lysophosphatidic acid receptor 6##BC045651|LPAR6|10161|lysophosphatidic acid receptor 6##NM_005767|LPAR6|10161|lysophosphatidic acid receptor 6##AK122856|LPAR6|10161|lysophosphatidic acid receptor 6##NM_001162497|LPAR6|10161|lysophosphatidic acid receptor 6##BC029052|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK298438|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK301516|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK304598|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK310081|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AK315703|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##NM_001268|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	0.0	0.0	
chr19	39042298	39042478	reg1008003.p3	4.440	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-118044	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-125516	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-148487	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	66200	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	67325	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	67428	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.0	0.0	
chr19	49315777	49315957	reg1003259.p5	4.440	+	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	-1619	-	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-56449	+	D87935 D87936 D87937 NM_000148	-57221	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	23907	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	24056	-	BC064601 AB208908 BC025259 AY007233 BC024157 NM_001161354 NM_020904	55929	-	AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC064601|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AB208908|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC025259|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##AY007233|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##BC024157|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_001161354|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4##NM_020904|PLEKHA4|57664|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	0.0	0.0	
chr22	18189305	18189424	reg1003961.p2	4.440	+	TSC_hg19_v1_chr22_+_18121576 AL831982 BC007658	-67799	+	CR456521 TSC_hg19_v1_chr22_+_18121529 NM_015367 AK056248 AK294286 AK314489 AK291449	-67874	+	TSC_hg19_v1_chr22_+_18111627 AF246665	-77725	+	AF250233 AK094795 BC036364 NM_001244572 NM_197966 TSC_hg19_v1_chr22_-_18256811	67416	-	D89803 TSC_hg19_v1_chr22_-_18257188 AY005151 EU678292	67810	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	67843	-	AL831982|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##BC007658|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##CR456521|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##NM_015367|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK056248|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK294286|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK314489|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AK291449|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AF246665|BCL2L13|23786|BCL2-like 13 (apoptosis facilitator)##AF250233|BID|637|BH3 interacting domain death agonist##AK094795|BID|637|BH3 interacting domain death agonist##BC036364|BID|637|BH3 interacting domain death agonist##NM_001244572|BID|637|BH3 interacting domain death agonist##NM_197966|BID|637|BH3 interacting domain death agonist##D89803|BID|637|BH3 interacting domain death agonist##AY005151|BID|637|BH3 interacting domain death agonist##EU678292|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist	0.0	0.0	
chr4	26369027	26369171	reg1010849.p2	4.440	+	TSC_hg19_v1_chr4_+_26322667 BC053568 BC064976	-46417	+	TSC_hg19_v1_chr4_+_26322635 AK302230	-46463	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	-46790	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	122886	-	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	216581	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	493441	+	BC053568|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC064976|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2	0.897355	0.0	denovo_WM_7:0:0.370	denovo_WM_7:1:0.299
chr6_mann_hap4	1832486	1832629	reg1013127.p1	4.440	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.992671	0.0	denovo_WM_7:50:0.823
chr6	14072323	14072441	reg1011214.p1	4.439	+	NM_001165033 AK090576 AX746519	-146939	+	NM_001165032 NM_152737 TSC_hg19_v1_chr6_+_13925202 AK315528 BC030666 BC050030	-147216	+	NM_001165034	-147706	+	NM_001251901	45104	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	45523	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	45640	+	NM_001165033|RNF182|221687|ring finger protein 182##AK090576|RNF182|221687|ring finger protein 182##NM_001165032|RNF182|221687|ring finger protein 182##NM_152737|RNF182|221687|ring finger protein 182##AK315528|RNF182|221687|ring finger protein 182##BC030666|RNF182|221687|ring finger protein 182##BC050030|RNF182|221687|ring finger protein 182##NM_001165034|RNF182|221687|ring finger protein 182##NM_001251901|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule	0.999559	0.0	
chr9	129602184	129602319	reg1011466.p1	4.439	+	TSC_hg19_v1_chr9_+_129567318 NM_001135776 NM_014007 AF049907 AK026123 BC008828	-34941	+	NM_001174146 NM_001174147 NM_002316 AB587444 BC112120 BC113491 BC143801 AF057135 BC069601 CU686928 HQ258228 BC069588	-225490	+	TSC_hg19_v1_chr9_+_129089122 NM_001011703 NM_033446 AK024432 BC028675 BC000122 CU688540	-513084	+	TSC_hg19_v1_chr9_+_129622936 AB082524 NM_001099270	20693	+	TSC_hg19_v1_chr9_+_129677073 AB002349 NM_001190729 NM_001190730 NM_014636 BC033708 BC019329 AK299149 BC032372	74853	+	AF221098 NM_001190728 AB385313 CU689706	122284	+	NM_001135776|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_014007|ZBTB43|23099|zinc finger and BTB domain containing 43##AF049907|ZBTB43|23099|zinc finger and BTB domain containing 43##AK026123|ZBTB43|23099|zinc finger and BTB domain containing 43##BC008828|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_001174146|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001174147|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_002316|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC112120|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC113491|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC143801|LMX1B|4010|LIM homeobox transcription factor 1, beta##AF057135|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069601|LMX1B|4010|LIM homeobox transcription factor 1, beta##HQ258228|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069588|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001011703|FAM125B|89853|family with sequence similarity 125, member B##NM_033446|FAM125B|89853|family with sequence similarity 125, member B##AK024432|FAM125B|89853|family with sequence similarity 125, member B##BC028675|FAM125B|89853|family with sequence similarity 125, member B##BC000122|FAM125B|89853|family with sequence similarity 125, member B##AB082524|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001099270|ZBTB34|403341|zinc finger and BTB domain containing 34##AB002349|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190729|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190730|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_014636|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC033708|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC019329|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK299149|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC032372|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AF221098|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190728|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1	0.0	0.0	
chrX	39674493	39674637	reg1013407.p1	4.439	+	TSC_hg19_v1_chrX_+_38663536 AK001248	-1011025	+	TSC_hg19_v1_chrX_+_38663455 AJ272057	-1011105	+	BC008908 NM_021242	-1011493	+	AF317391 AF317392 AY316592 TSC_hg19_v1_chrX_-_39956720 NM_001123385 NM_017745	282127	-	BC114220 NM_001123383 NM_001123384	362016	-	AK297760 AK075382 TSC_hg19_v1_chrX_+_40440221 AF248966 AY038990 NM_005765 AK296614	765621	+	AK001248|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AJ272057|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##BC008908|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##NM_021242|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AF317391|BCOR|54880|BCL6 corepressor##AF317392|BCOR|54880|BCL6 corepressor##AY316592|BCOR|54880|BCL6 corepressor##NM_001123385|BCOR|54880|BCL6 corepressor##NM_017745|BCOR|54880|BCL6 corepressor##BC114220|BCOR|54880|BCL6 corepressor##NM_001123383|BCOR|54880|BCL6 corepressor##NM_001123384|BCOR|54880|BCL6 corepressor##AK297760|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK075382|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF248966|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AY038990|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##NM_005765|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK296614|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2	0.996948	0.01306	denovo_WM_7:-34:0.877
chr12	92517782	92517928	reg1004440.p1	4.438	+	NM_001920	-941050	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-941275	-	AK291309 BX571756 TSC_hg19_v1_chr12_-_91573325 NM_133503	-944544	-	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	21788	-	AJ845165 AJ845166 NM_001025233	299879	+	AJ845168 NM_001025232	304068	-	NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AK291309|DCN|1634|decorin##BX571756|DCN|1634|decorin##NM_133503|DCN|1634|decorin##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand	0.990837	0.0	denovo_WM_7:-36:0.330	denovo_WM_7:-37:0.330	denovo_WM_7:-38:0.330
chr20	51629848	51630003	reg1011789.p1	4.438	+	AK091206 AX746848 TSC_hg19_v1_chr20_+_51589805	-40147	+	BX640770 NM_173485	-40980	+	BC012759 BC041622 NM_018197 NM_022088 NM_199426 NM_199427	-821402	-	AK302570 NM_001193421	171896	+	AF041259 NM_006526	569710	-	TSC_hg19_v1_chr20_-_52210810 AK290350	580874	-	AK091206|TSHZ2|128553|teashirt zinc finger homeobox 2##BX640770|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_173485|TSHZ2|128553|teashirt zinc finger homeobox 2##BC012759|ZFP64|55734|zinc finger protein 64 homolog (mouse)##BC041622|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_018197|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_022088|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199426|ZFP64|55734|zinc finger protein 64 homolog (mouse)##NM_199427|ZFP64|55734|zinc finger protein 64 homolog (mouse)##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK290350|ZNF217|7764|zinc finger protein 217	0.020329	0.0	
chr5	176465768	176465888	reg1011428.p1	4.438	+	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	-16109	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	-32240	-	U51333 BC028129 NM_002115	-139505	-	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	48054	+	NM_022963 X57205 AF202063 EU826602 AF359241 AB590389 DQ893458 DQ896348 EU826603 JN007471 JN007472 JN007473 JN007474 JN007475 JN007476 JN007477 JN007478 JN007479 JN007480 JN007481 JN007482	50748	+	TSC_hg19_v1_chr5_+_176560037 AK126591	94202	+	AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4##NM_022963|FGFR4|2264|fibroblast growth factor receptor 4##X57205|FGFR4|2264|fibroblast growth factor receptor 4##AF202063|FGFR4|2264|fibroblast growth factor receptor 4##EU826602|FGFR4|2264|fibroblast growth factor receptor 4##AF359241|FGFR4|2264|fibroblast growth factor receptor 4##DQ893458|FGFR4|2264|fibroblast growth factor receptor 4##DQ896348|FGFR4|2264|fibroblast growth factor receptor 4##EU826603|FGFR4|2264|fibroblast growth factor receptor 4##AK126591|NSD1|64324|nuclear receptor binding SET domain protein 1	0.923954	0.0	denovo_WM_7:29:0.588
chr7	148723756	148723871	reg1009432.p1	4.438	+	TSC_hg19_v1_chr7_-_148581422 AK303637 NM_001203247 NM_001203248 NM_004456 NM_152998	-142387	-	TSC_hg19_v1_chr7_-_148581380 AK314291	-142432	-	TSC_hg19_v1_chr7_-_148581377 AK293239 AK303585	-142436	-	CU674214 DQ893573 DQ894347 TSC_hg19_v1_chr7_-_148725561 BC000425 BC001928 J05016 AK290971	1742	-	BC006344 BC011754 AK313299 TSC_hg19_v1_chr7_-_148725753	1930	-	TSC_hg19_v1_chr7_-_148725766 NM_004911	1959	-	AK303637|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203247|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203248|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_004456|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_152998|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK314291|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK293239|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK303585|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##DQ893573|PDIA4|9601|protein disulfide isomerase family A, member 4##DQ894347|PDIA4|9601|protein disulfide isomerase family A, member 4##BC000425|PDIA4|9601|protein disulfide isomerase family A, member 4##BC001928|PDIA4|9601|protein disulfide isomerase family A, member 4##AK290971|PDIA4|9601|protein disulfide isomerase family A, member 4##BC006344|PDIA4|9601|protein disulfide isomerase family A, member 4##BC011754|PDIA4|9601|protein disulfide isomerase family A, member 4##AK313299|PDIA4|9601|protein disulfide isomerase family A, member 4##NM_004911|PDIA4|9601|protein disulfide isomerase family A, member 4	1.841201	0.0	denovo_WM_7:-74:0.820	denovo_WM_7:87:0.324	denovo_WM_7:88:0.324	denovo_WM_7:89:0.324
chr17	73987816	73987996	reg1000154.p2	4.437	+	TSC_hg19_v1_chr17_-_73975509 NM_001185039 NM_004035 NM_007292	-12379	-	BC008767 TSC_hg19_v1_chr17_-_73975478	-12440	-	NM_001113324 BC047782 TSC_hg19_v1_chr17_+_73975332 BX647274 BX648576 AK097104	-12584	+	NM_001258 TSC_hg19_v1_chr17_+_73997033	9103	+	BC126103 BC126105 BC143813 BC143814 U53786 TSC_hg19_v1_chr17_-_74023388	35444	-	TSC_hg19_v1_chr17_-_74023511 NM_001988 AK290333	35608	-	NM_001185039|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_004035|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_007292|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##BC008767|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_001113324|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##BC047782|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##BX647274|TEN1-CDK3|100529145|TEN1-CDK3 readthrough##BX648576|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##AK097104|TEN1-CDK3|100529145|TEN1-CDK3 readthrough##NM_001258|CDK3|1018|cyclin-dependent kinase 3##BC126103|EVPL|2125|envoplakin##BC126105|EVPL|2125|envoplakin##BC143813|EVPL|2125|envoplakin##BC143814|EVPL|2125|envoplakin##U53786|EVPL|2125|envoplakin##NM_001988|EVPL|2125|envoplakin##AK290333|EVPL|2125|envoplakin	0.0	0.0	
chr3	151914672	151914778	reg1013521.p1	4.437	+	TSC_hg19_v1_chr3_+_151591430 AK290420 NM_033050 BC030948 AF247785	-323272	+	NM_001086 L32179 BC020706 AK290628 BC032309 CU689322	-382821	+	TSC_hg19_v1_chr3_+_151488214 BC014344	-426495	+	NM_021038 NM_207292	71103	+	TSC_hg19_v1_chr3_+_151986753 BC050535 BC043493	72017	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	72620	-	AK290420|SUCNR1|56670|succinate receptor 1##NM_033050|SUCNR1|56670|succinate receptor 1##BC030948|SUCNR1|56670|succinate receptor 1##AF247785|SUCNR1|56670|succinate receptor 1##NM_001086|AADAC|13|arylacetamide deacetylase (esterase)##L32179|AADAC|13|arylacetamide deacetylase (esterase)##BC020706|AADAC|13|arylacetamide deacetylase (esterase)##AK290628|AADAC|13|arylacetamide deacetylase (esterase)##BC032309|AADAC|13|arylacetamide deacetylase (esterase)##BC014344|LOC201651|201651|arylacetamide deacetylase (esterase) pseudogene##NM_021038|MBNL1|4154|muscleblind-like (Drosophila)##NM_207292|MBNL1|4154|muscleblind-like (Drosophila)##BC050535|MBNL1|4154|muscleblind-like (Drosophila)##BC043493|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093	0.988101	0.0	denovo_WM_7:-58:0.988
chr4	10745241	10745357	reg1013259.p1	4.437	+	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-58898	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-286289	-	TSC_hg19_v1_chr4_-_10118515 NM_005112 NM_017491	-626763	-	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	685233	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2740652	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2740676	-	BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##NM_005112|WDR1|9948|WD repeat domain 1##NM_017491|WDR1|9948|WD repeat domain 1##BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family	0.117323	0.0	
chr7	127290758	127290846	reg1012966.p1	4.437	+	AB528989 EU446646 BC074761 BC107149 BC107150 AF043978 NM_006193	-35126	-	AF281049 NM_020369 AK225867 AK300518 AK301765 AK314050 BC035606 DQ892069 DQ895262 CU690130	-57005	+	NM_001662 TSC_hg19_v1_chr7_+_127228469 AK307297 AK308548 BC033104 M57567 AK297026 AK312107 BC003043 AB528679 AF493884 BT007087	-62324	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	1380	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	1434	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	1534	+	EU446646|PAX4|5078|paired box 4##BC074761|PAX4|5078|paired box 4##BC107149|PAX4|5078|paired box 4##BC107150|PAX4|5078|paired box 4##AF043978|PAX4|5078|paired box 4##NM_006193|PAX4|5078|paired box 4##AF281049|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##NM_020369|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##AK225867|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##AK300518|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##AK314050|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##BC035606|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##DQ892069|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##DQ895262|FSCN3|29999|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)##NM_001662|ARF5|381|ADP-ribosylation factor 5##AK307297|ARF5|381|ADP-ribosylation factor 5##AK308548|ARF5|381|ADP-ribosylation factor 5##BC033104|ARF5|381|ADP-ribosylation factor 5##M57567|ARF5|381|ADP-ribosylation factor 5##AK297026|ARF5|381|ADP-ribosylation factor 5##AK312107|ARF5|381|ADP-ribosylation factor 5##BC003043|ARF5|381|ADP-ribosylation factor 5##AF493884|ARF5|381|ADP-ribosylation factor 5##BT007087|ARF5|381|ADP-ribosylation factor 5##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1	0.998601	0.0	
chr7	7759189	7759302	reg1010829.p1	4.437	+	BC009868 NM_002947	-1008	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-78872	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-79158	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	249188	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	542471	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	542546	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.010069	0.0	
chr12	23748568	23748663	reg1011361.p1	4.436	+	NM_178010 AK098610 AK223536	-11089	-	TSC_hg19_v1_chr12_+_22778130 CU688188 BC006111 AL137750 AK074425	-970468	+	AF207600 TSC_hg19_v1_chr12_+_22778077 BC066907 NM_001039481 NM_018638	-970572	+	AK074317 TSC_hg19_v1_chr12_-_24102605 BC065532 AB081589 NM_006940	353987	-	TSC_hg19_v1_chr12_-_24103855 AK299607 AK096569	355239	-	BC014929 TSC_hg19_v1_chr12_-_24103967 AK303970	355346	-	NM_178010|SOX5|6660|SRY (sex determining region Y)-box 5##AK098610|SOX5|6660|SRY (sex determining region Y)-box 5##AK223536|SOX5|6660|SRY (sex determining region Y)-box 5##BC006111|ETNK1|55500|ethanolamine kinase 1##AL137750|ETNK1|55500|ethanolamine kinase 1##AK074425|ETNK1|55500|ethanolamine kinase 1##AF207600|ETNK1|55500|ethanolamine kinase 1##BC066907|ETNK1|55500|ethanolamine kinase 1##NM_001039481|ETNK1|55500|ethanolamine kinase 1##NM_018638|ETNK1|55500|ethanolamine kinase 1##AK074317|SOX5|6660|SRY (sex determining region Y)-box 5##BC065532|SOX5|6660|SRY (sex determining region Y)-box 5##AB081589|SOX5|6660|SRY (sex determining region Y)-box 5##NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5##AK299607|SOX5|6660|SRY (sex determining region Y)-box 5##AK096569|SOX5|6660|SRY (sex determining region Y)-box 5##BC014929|SOX5|6660|SRY (sex determining region Y)-box 5##AK303970|SOX5|6660|SRY (sex determining region Y)-box 5	1.791821	0.0	denovo_WM_7:-40:0.390	denovo_WM_7:-42:0.355	denovo_WM_7:-55:0.405	denovo_WM_7:-57:0.348
chr1	64060202	64060296	reg1013186.p1	4.436	+	AK293298 NM_001172819 AK298505	-735	+	TSC_hg19_v1_chr1_+_64059081 AK294186 BC019920 NM_002633 BC001756 BC067763 AK312254 M83088 BC090856 DQ890618 DQ893786 CU676478 BT006961	-1224	+	AK292220 NM_032437 AK092219 TSC_hg19_v1_chr1_+_63989242 AK315850 AB058702 BC015814	-71110	+	NM_001172818 AK300100	28644	+	TSC_hg19_v1_chr1_+_64239705 AK308088 BC080541 NM_001083592 NM_005012 BC006374 M97675	179410	+	BC029895 NM_152489	609240	+	AK293298|PGM1|5236|phosphoglucomutase 1##NM_001172819|PGM1|5236|phosphoglucomutase 1##AK298505|PGM1|5236|phosphoglucomutase 1##AK294186|PGM1|5236|phosphoglucomutase 1##BC019920|PGM1|5236|phosphoglucomutase 1##NM_002633|PGM1|5236|phosphoglucomutase 1##BC001756|PGM1|5236|phosphoglucomutase 1##BC067763|PGM1|5236|phosphoglucomutase 1##AK312254|PGM1|5236|phosphoglucomutase 1##M83088|PGM1|5236|phosphoglucomutase 1##BC090856|PGM1|5236|phosphoglucomutase 1##DQ890618|PGM1|5236|phosphoglucomutase 1##DQ893786|PGM1|5236|phosphoglucomutase 1##BT006961|PGM1|5236|phosphoglucomutase 1##AK292220|EFCAB7|84455|EF-hand calcium binding domain 7##NM_032437|EFCAB7|84455|EF-hand calcium binding domain 7##AK092219|EFCAB7|84455|EF-hand calcium binding domain 7##AK315850|EFCAB7|84455|EF-hand calcium binding domain 7##AB058702|EFCAB7|84455|EF-hand calcium binding domain 7##BC015814|EFCAB7|84455|EF-hand calcium binding domain 7##NM_001172818|PGM1|5236|phosphoglucomutase 1##AK300100|PGM1|5236|phosphoglucomutase 1##AK308088|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC080541|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_001083592|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_005012|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC006374|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##M97675|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC029895|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)##NM_152489|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)	0.407914	0.0	
chr5	54634911	54635016	reg1008988.p2	4.436	+	AK291649 AK304788 TSC_hg19_v1_chr5_+_54603828 D29641 BC065258 AB527662	-31129	+	TSC_hg19_v1_chr5_+_54603816 BC104996 BC113509 BC028604	-31157	+	NM_015360 BC105291 BX640789	-31368	+	BC040295 CU691780 AB000888 BC117133 BC143281 BC168254 TSC_hg19_v1_chr5_-_54830793 AF017116 BC039847 AF014402 AF014403 BC008787 NM_003711 NM_176895	195705	-	TSC_hg19_v1_chr5_-_55008090 BC101361 BC101362 AK075190	373123	-	TSC_hg19_v1_chr5_-_55008148 AK122957 BC066891 NM_173514	373185	-	AK291649|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##AK304788|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##D29641|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC065258|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC104996|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC113509|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC028604|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##NM_015360|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC105291|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BX640789|SKIV2L2|23517|superkiller viralicidic activity 2-like 2 (S. cerevisiae)##BC040295|RNF138P1|379013|ring finger protein 138 pseudogene 1##AB000888|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC117133|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC143281|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC168254|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF017116|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC039847|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF014402|PPAP2A|8611|phosphatidic acid phosphatase type 2A##AF014403|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC008787|PPAP2A|8611|phosphatidic acid phosphatase type 2A##NM_003711|PPAP2A|8611|phosphatidic acid phosphatase type 2A##NM_176895|PPAP2A|8611|phosphatidic acid phosphatase type 2A##BC101361|SLC38A9|153129|solute carrier family 38, member 9##BC101362|SLC38A9|153129|solute carrier family 38, member 9##AK075190|SLC38A9|153129|solute carrier family 38, member 9##AK122957|SLC38A9|153129|solute carrier family 38, member 9##BC066891|SLC38A9|153129|solute carrier family 38, member 9##NM_173514|SLC38A9|153129|solute carrier family 38, member 9	0.0	0.0	
chr6	131124797	131124925	reg1012356.p1	4.436	+	AB052099 NM_052913	-366600	+	AK091882 AX747235 NM_001017373	-580763	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	-588406	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	23701	+	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	166690	-	CR749262 CR936793 NM_001252660	197026	-	AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2	1.991369	0.0	denovo_WM_7:-1:0.969	denovo_WM_7:13:0.487	denovo_WM_7:14:0.506
chr8	9480597	9480663	reg1002852.p1	4.436	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	-67149	+	TSC_hg19_v1_chr8_+_9413423 AK302031	-67207	+	TSC_hg19_v1_chr8_+_9413421 BC098394	-67225	+	TSC_hg19_v1_chr8_+_9911765 AY958429	431139	+	TSC_hg19_v1_chr8_+_9911861 AJ242973 BC054033 NM_001135670 NM_012331 AF086925 AF183420	431249	+	AK293488 AY958430 AY958431 BC047552 NM_001135671 NM_001199729	472433	+	BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AY958429|MSRA|4482|methionine sulfoxide reductase A##AJ242973|MSRA|4482|methionine sulfoxide reductase A##BC054033|MSRA|4482|methionine sulfoxide reductase A##NM_001135670|MSRA|4482|methionine sulfoxide reductase A##NM_012331|MSRA|4482|methionine sulfoxide reductase A##AF086925|MSRA|4482|methionine sulfoxide reductase A##AF183420|MSRA|4482|methionine sulfoxide reductase A##AK293488|MSRA|4482|methionine sulfoxide reductase A##AY958430|MSRA|4482|methionine sulfoxide reductase A##AY958431|MSRA|4482|methionine sulfoxide reductase A##BC047552|MSRA|4482|methionine sulfoxide reductase A##NM_001135671|MSRA|4482|methionine sulfoxide reductase A##NM_001199729|MSRA|4482|methionine sulfoxide reductase A	0.0	0.0	
chr13	49535605	49535734	reg1013026.p2	4.435	+	AB041947 AB038269 BC096832 BC069160 NM_020377 AB590816	-254884	+	AK122778 TSC_hg19_v1_chr13_-_49110119	-425551	-	AB209543 TSC_hg19_v1_chr13_-_49107365	-428305	-	TSC_hg19_v1_chr13_+_49550058 AJ749706 NM_001079673 BX648706 BX648141 AK056071	14491	+	TSC_hg19_v1_chr13_+_49550791 BC051029	15052	+	TSC_hg19_v1_chr13_+_49550938 BX640739	15256	+	AB041947|CYSLTR2|57105|cysteinyl leukotriene receptor 2##AB038269|CYSLTR2|57105|cysteinyl leukotriene receptor 2##BC096832|CYSLTR2|57105|cysteinyl leukotriene receptor 2##BC069160|CYSLTR2|57105|cysteinyl leukotriene receptor 2##NM_020377|CYSLTR2|57105|cysteinyl leukotriene receptor 2##AK122778|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AB209543|RCBTB2|1102|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2##AJ749706|FNDC3A|22862|fibronectin type III domain containing 3A##NM_001079673|FNDC3A|22862|fibronectin type III domain containing 3A##BX648706|FNDC3A|22862|fibronectin type III domain containing 3A##BX648141|FNDC3A|22862|fibronectin type III domain containing 3A##AK056071|FNDC3A|22862|fibronectin type III domain containing 3A##BC051029|FNDC3A|22862|fibronectin type III domain containing 3A##BX640739|FNDC3A|22862|fibronectin type III domain containing 3A	0.299215	0.0	
chr13	98841487	98841589	reg1012659.p1	4.435	+	AB464689 EU446571 AF539427 BC025388 BC017585 NM_178861	-12033	-	TSC_hg19_v1_chr13_+_98795717 AB008430 BC065020	-45820	+	TSC_hg19_v1_chr13_+_98795470 BC041595	-46052	+	TSC_hg19_v1_chr13_+_99058147 AF339817	216668	+	AF083420 NM_003576	332757	-	TSC_hg19_v1_chr13_-_99229043 BT019619 CR542227 CU690112 AB590338 DQ890912	387516	-	EU446571|RNF113B|140432|ring finger protein 113B##AF539427|RNF113B|140432|ring finger protein 113B##BC025388|RNF113B|140432|ring finger protein 113B##BC017585|RNF113B|140432|ring finger protein 113B##NM_178861|RNF113B|140432|ring finger protein 113B##AB008430|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC065020|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC041595|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##AF083420|STK24|8428|serine/threonine kinase 24##NM_003576|STK24|8428|serine/threonine kinase 24##BT019619|STK24|8428|serine/threonine kinase 24##CR542227|STK24|8428|serine/threonine kinase 24##DQ890912|STK24|8428|serine/threonine kinase 24	0.997219	0.0	denovo_WM_7:-13:0.841
chr14	84595570	84595747	reg1014416.p1	4.435	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-2595431	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-2595510	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-2730832	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	1400815	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	1400883	+	TSC_hg19_v1_chr14_+_85999692 AK297248	1403927	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.0	0.0	
chr16	1661996	1662120	reg1004339.p2	4.435	+	TSC_hg19_v1_chr16_-_1662054 NM_014714	-20	-	TSC_hg19_v1_chr16_-_1660720 AB011162 AK299035 AK299115	-1366	-	BC105785 AY358178 NM_024600	-77863	+	NM_020825	2582	+	AK309909 AK296998 NM_144570 TSC_hg19_v1_chr16_+_1728279 AK023154	66210	+	BC060853 TSC_hg19_v1_chr16_+_1728289	66228	+	NM_014714|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AB011162|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299035|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##AK299115|IFT140|9742|intraflagellar transport 140 homolog (Chlamydomonas)##BC105785|TMEM204|79652|transmembrane protein 204##AY358178|TMEM204|79652|transmembrane protein 204##NM_024600|TMEM204|79652|transmembrane protein 204##NM_020825|CRAMP1L|57585|Crm, cramped-like (Drosophila)##AK309909|HN1L|90861|hematological and neurological expressed 1-like##AK296998|HN1L|90861|hematological and neurological expressed 1-like##NM_144570|HN1L|90861|hematological and neurological expressed 1-like##AK023154|HN1L|90861|hematological and neurological expressed 1-like##BC060853|HN1L|90861|hematological and neurological expressed 1-like	0.0	0.0	
chr20	14531464	14531592	reg1012001.p2	4.435	+	AB040902 AF169677 TSC_hg19_v1_chr20_-_14318278 BC020870 AK027297 AK074883 NM_013281 NM_198391	-213272	-	TSC_hg19_v1_chr20_+_13976263 BC101216 BC101217 BC101218 BC101219 BC126936 BC128036 EF159161	-555192	+	AK131348 TSC_hg19_v1_chr20_+_13976161 NM_080676	-555422	+	BC018687 NM_001033087	645975	+	TSC_hg19_v1_chr20_-_16553995 AB385485 CU690726 AK307399 AB046810 BC150261 BX647572 AK095322 AY166853 BC050577 NM_001199865 NM_001199866 NM_024704	2022485	-	NM_003092 NM_198220 TSC_hg19_v1_chr20_+_16710679 BC018022 BC036737 AK313004 BC022311 BC008311 M15841	2179135	+	AB040902|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AF169677|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC020870|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK027297|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##AK074883|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_013281|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##NM_198391|FLRT3|23767|fibronectin leucine rich transmembrane protein 3##BC101216|MACROD2|140733|MACRO domain containing 2##BC101217|MACROD2|140733|MACRO domain containing 2##BC101218|MACROD2|140733|MACRO domain containing 2##BC101219|MACROD2|140733|MACRO domain containing 2##BC126936|MACROD2|140733|MACRO domain containing 2##BC128036|MACROD2|140733|MACRO domain containing 2##EF159161|MACROD2|140733|MACRO domain containing 2##AK131348|MACROD2|140733|MACRO domain containing 2##NM_080676|MACROD2|140733|MACRO domain containing 2##BC018687|MACROD2|140733|MACRO domain containing 2##NM_001033087|MACROD2|140733|MACRO domain containing 2##AK307399|KIF16B|55614|kinesin family member 16B##AB046810|KIF16B|55614|kinesin family member 16B##BC150261|KIF16B|55614|kinesin family member 16B##BX647572|KIF16B|55614|kinesin family member 16B##AK095322|KIF16B|55614|kinesin family member 16B##AY166853|KIF16B|55614|kinesin family member 16B##BC050577|KIF16B|55614|kinesin family member 16B##NM_001199865|KIF16B|55614|kinesin family member 16B##NM_001199866|KIF16B|55614|kinesin family member 16B##NM_024704|KIF16B|55614|kinesin family member 16B##NM_003092|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##NM_198220|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC018022|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC036737|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##AK313004|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC022311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##BC008311|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B##M15841|SNRPB2|6629|small nuclear ribonucleoprotein polypeptide B	0.996868	0.0	denovo_WM_7:6:0.985
chr7	143534455	143534554	reg1013337.p1	4.435	+	BC110410 BC043153 NM_178561	-79698	-	NM_001130026 AK296318	-121554	+	BC113530 BC117233 NM_173678 AY167570 BC010225	-215962	+	AK299911 TSC_hg19_v1_chr7_-_143582416 NM_001206941	47910	-	TSC_hg19_v1_chr7_-_143599249 AB018281 NM_014719 BC000609 AK291605 AK001640 NM_001206938	64761	-	BC136812 BC136813 NM_001004685	97787	+	BC110410|CTAGE6P|340307|CTAGE family, member 6, pseudogene##BC043153|CTAGE6P|340307|CTAGE family, member 6, pseudogene##NM_178561|CTAGE6P|340307|CTAGE family, member 6, pseudogene##NM_001130026|FAM115C|285966|family with sequence similarity 115, member C##AK296318|FAM115C|285966|family with sequence similarity 115, member C##BC113530|FAM115C|285966|family with sequence similarity 115, member C##BC117233|FAM115C|285966|family with sequence similarity 115, member C##NM_173678|FAM115C|285966|family with sequence similarity 115, member C##AY167570|FAM115C|285966|family with sequence similarity 115, member C##BC010225|LOC154761|154761|uncharacterized LOC154761##AK299911|FAM115A|9747|family with sequence similarity 115, member A##NM_001206941|FAM115A|9747|family with sequence similarity 115, member A##AB018281|FAM115A|9747|family with sequence similarity 115, member A##NM_014719|FAM115A|9747|family with sequence similarity 115, member A##BC000609|FAM115A|9747|family with sequence similarity 115, member A##AK291605|FAM115A|9747|family with sequence similarity 115, member A##AK001640|FAM115A|9747|family with sequence similarity 115, member A##NM_001206938|FAM115A|9747|family with sequence similarity 115, member A##BC136812|OR2F2|135948|olfactory receptor, family 2, subfamily F, member 2##BC136813|OR2F2|135948|olfactory receptor, family 2, subfamily F, member 2##NM_001004685|OR2F2|135948|olfactory receptor, family 2, subfamily F, member 2	0.0	0.998366	CTCF.p2:13:0.998
chr8	41386074	41386219	reg1010844.p1	4.435	+	AF068291 TSC_hg19_v1_chr8_+_41348140 BC012032 NM_001002296	-37997	+	TSC_hg19_v1_chr8_+_41348114 AB104615 BC001227 AF125102	-38034	+	TSC_hg19_v1_chr8_+_41348100 AK026613	-38047	+	NM_032336 AK299207 BC027454 TSC_hg19_v1_chr8_+_41386745 BC005995	591	+	TSC_hg19_v1_chr8_+_41386779 AK095334 AK313373	626	+	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	49548	+	AF068291|GOLGA7|51125|golgin A7##BC012032|GOLGA7|51125|golgin A7##NM_001002296|GOLGA7|51125|golgin A7##AB104615|GOLGA7|51125|golgin A7##BC001227|GOLGA7|51125|golgin A7##AF125102|GOLGA7|51125|golgin A7##AK026613|GOLGA7|51125|golgin A7##NM_032336|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK299207|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC027454|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC005995|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK095334|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK313373|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	0.999262	0.0	denovo_WM_7:-34:0.295	denovo_WM_7:-35:0.295	denovo_WM_7:-36:0.295
chr13	77919801	77919908	reg1008289.p1	4.434	+	NM_015057 TSC_hg19_v1_chr13_-_77901230	-18651	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	-318523	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	-318572	-	NM_001160706 NM_003843 NM_144777 BC020726 AF045941 AK025320 AK222720 AK301659	189997	+	TSC_hg19_v1_chr13_+_78271822 NM_001242868	352050	+	AK294201 NM_001040153	353161	+	NM_015057|MYCBP2|23077|MYC binding protein 2##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_001160706|SCEL|8796|sciellin##NM_003843|SCEL|8796|sciellin##NM_144777|SCEL|8796|sciellin##BC020726|SCEL|8796|sciellin##AF045941|SCEL|8796|sciellin##AK025320|SCEL|8796|sciellin##AK222720|SCEL|8796|sciellin##AK301659|SCEL|8796|sciellin##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1##AK294201|SLAIN1|122060|SLAIN motif family, member 1##NM_001040153|SLAIN1|122060|SLAIN motif family, member 1	0.0	0.0	
chr14	93236846	93236989	reg1014356.p2	4.434	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	-21958	-	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-118094	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-118281	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	23769	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	152527	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	152680	+	Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	0.0	0.0	
chr18	19191722	19191805	reg1015115.p1	4.434	+	TSC_hg19_v1_chr18_-_19180830 AL832041	-10887	-	TSC_hg19_v1_chr18_-_19180666 NM_052911 AK096746	-11085	-	TSC_hg19_v1_chr18_-_19180616 AB067498	-11144	-	TSC_hg19_v1_chr18_+_19192269 J03798 NM_006938 BC001721	488	+	TSC_hg19_v1_chr18_+_19192302 AJ577268 BC072427	553	+	CU676866 AK024880 TSC_hg19_v1_chr18_-_19284733 AF007152 BC021196 AK298728	92916	-	AL832041|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##NM_052911|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##AK096746|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##AB067498|ESCO1|114799|establishment of cohesion 1 homolog 1 (S. cerevisiae)##J03798|SNRPD1|6632|small nuclear ribonucleoprotein D1 polypeptide 16kDa##NM_006938|SNRPD1|6632|small nuclear ribonucleoprotein D1 polypeptide 16kDa##BC001721|SNRPD1|6632|small nuclear ribonucleoprotein D1 polypeptide 16kDa##AJ577268|SNRPD1|6632|small nuclear ribonucleoprotein D1 polypeptide 16kDa##BC072427|SNRPD1|6632|small nuclear ribonucleoprotein D1 polypeptide 16kDa##AK024880|ABHD3|171586|abhydrolase domain containing 3##AF007152|ABHD3|171586|abhydrolase domain containing 3##BC021196|ABHD3|171586|abhydrolase domain containing 3##AK298728|ABHD3|171586|abhydrolase domain containing 3	0.999644	0.0	
chr19	7717008	7717154	reg1008295.p1	4.434	+	AB002559 U63533 TSC_hg19_v1_chr19_+_7702028 AK302257 AB464275 BT006915	-15054	+	TSC_hg19_v1_chr19_+_7702012 BC002869	-15069	+	TSC_hg19_v1_chr19_+_7701995 NM_001127396 NM_006949 AK303701 AK314230 AK222967 AK222977	-15089	+	AF290874 AF323081 AY207314 BC069302 NM_001193374 NM_020415 TSC_hg19_v1_chr19_+_7733975 BC101554 BC101560 AF205952 AY359066	16901	+	TSC_hg19_v1_chr19_+_7741975 BC104796 BC104798 NM_174918 AF461156 BC035847	24886	+	NM_001042462 TSC_hg19_v1_chr19_+_7745726 AK292001	28636	+	AB002559|STXBP2|6813|syntaxin binding protein 2##U63533|STXBP2|6813|syntaxin binding protein 2##AK302257|STXBP2|6813|syntaxin binding protein 2##BT006915|STXBP2|6813|syntaxin binding protein 2##BC002869|STXBP2|6813|syntaxin binding protein 2##NM_001127396|STXBP2|6813|syntaxin binding protein 2##NM_006949|STXBP2|6813|syntaxin binding protein 2##AK303701|STXBP2|6813|syntaxin binding protein 2##AK314230|STXBP2|6813|syntaxin binding protein 2##AK222967|STXBP2|6813|syntaxin binding protein 2##AK222977|STXBP2|6813|syntaxin binding protein 2##AF290874|RETN|56729|resistin##AF323081|RETN|56729|resistin##AY207314|RETN|56729|resistin##BC069302|RETN|56729|resistin##NM_001193374|RETN|56729|resistin##NM_020415|RETN|56729|resistin##BC101554|RETN|56729|resistin##BC101560|RETN|56729|resistin##AF205952|RETN|56729|resistin##AY359066|RETN|56729|resistin##BC104796|C19orf59|199675|chromosome 19 open reading frame 59##BC104798|C19orf59|199675|chromosome 19 open reading frame 59##NM_174918|C19orf59|199675|chromosome 19 open reading frame 59##AF461156|C19orf59|199675|chromosome 19 open reading frame 59##BC035847|C19orf59|199675|chromosome 19 open reading frame 59##NM_001042462|TRAPPC5|126003|trafficking protein particle complex 5##AK292001|TRAPPC5|126003|trafficking protein particle complex 5	0.972754	0.793409	CTCF.p2:0:0.793	denovo_WM_7:-83:0.402	denovo_WM_7:-84:0.402
chr20	6900643	6900773	reg1009087.p2	4.434	+	BC069214 NM_001200	-151964	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-796545	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-796831	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1020394	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1099592	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1099699	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.996638	0.0	denovo_WM_7:67:0.985
chr5	130609439	130609586	reg1012707.p1	4.434	+	TSC_hg19_v1_chr5_+_130599794 BC058909	-9712	+	AK312406 TSC_hg19_v1_chr5_+_130599768	-9744	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	-9756	+	AF478468 AF478469 AB527407 TSC_hg19_v1_chr5_-_130970764	361245	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	361307	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	361366	-	BC058909|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AF478468|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478469|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6	0.998334	0.0	denovo_WM_7:-43:0.457	denovo_WM_7:-44:0.457
chr8	37125092	37125272	reg1009665.p1	4.434	+	NM_001031836 AK302391 BC028701	-483312	+	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	-2032195	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-3667687	-	TSC_hg19_v1_chr8_-_37457377 AK025743	332186	-	TSC_hg19_v1_chr8_+_37553300 AK024361 NM_025069 BC032534	428135	+	TSC_hg19_v1_chr8_+_37594112 NM_001003791 NM_007175 AL442077	468924	+	NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK025743|LOC157860|157860|uncharacterized LOC157860##AK024361|ZNF703|80139|zinc finger protein 703##NM_025069|ZNF703|80139|zinc finger protein 703##BC032534|ZNF703|80139|zinc finger protein 703##NM_001003791|ERLIN2|11160|ER lipid raft associated 2##NM_007175|ERLIN2|11160|ER lipid raft associated 2##AL442077|ERLIN2|11160|ER lipid raft associated 2	0.0	0.0	
chr8	60746775	60746841	reg1018166.p1	4.434	+	AB385385 DQ891665 DQ894852 AK000971 BC016665 AK302331 AB018351 NM_014729 TSC_hg19_v1_chr8_-_60031796	-715136	-	NM_003580 TSC_hg19_v1_chr8_-_59572413	-1174397	-	BC041124 TSC_hg19_v1_chr8_-_59572386	-1174422	-	BC015531 BC108929 BC082971 TSC_hg19_v1_chr8_-_61193958 BC069744 AK090655 AK289470 AK314538 AY075022 NM_004056	447113	-	TSC_hg19_v1_chr8_+_61429488 NM_001242644 NM_002865	682632	+	AK297576 TSC_hg19_v1_chr8_+_61429494	682686	+	DQ891665|TOX|9760|thymocyte selection-associated high mobility group box##DQ894852|TOX|9760|thymocyte selection-associated high mobility group box##AK000971|TOX|9760|thymocyte selection-associated high mobility group box##BC016665|TOX|9760|thymocyte selection-associated high mobility group box##AK302331|TOX|9760|thymocyte selection-associated high mobility group box##AB018351|TOX|9760|thymocyte selection-associated high mobility group box##NM_014729|TOX|9760|thymocyte selection-associated high mobility group box##NM_003580|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC041124|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC015531|CA8|767|carbonic anhydrase VIII##BC108929|CA8|767|carbonic anhydrase VIII##BC069744|CA8|767|carbonic anhydrase VIII##AK090655|CA8|767|carbonic anhydrase VIII##AK289470|CA8|767|carbonic anhydrase VIII##AK314538|CA8|767|carbonic anhydrase VIII##AY075022|CA8|767|carbonic anhydrase VIII##NM_004056|CA8|767|carbonic anhydrase VIII##NM_001242644|RAB2A|5862|RAB2A, member RAS oncogene family##NM_002865|RAB2A|5862|RAB2A, member RAS oncogene family##AK297576|RAB2A|5862|RAB2A, member RAS oncogene family	0.0	0.0	
chrX	40596481	40596608	reg1014110.p1	4.434	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-1415	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-1564	-	TSC_hg19_v1_chrX_-_40594795 AB006651 AF304448 BC098377 NM_004229	-1756	-	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	348328	+	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	596106	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	596913	+	AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AB006651|MED14|9282|mediator complex subunit 14##AF304448|MED14|9282|mediator complex subunit 14##BC098377|MED14|9282|mediator complex subunit 14##NM_004229|MED14|9282|mediator complex subunit 14##NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	0.998108	0.057893	
chr11	76735850	76735932	reg1011071.p2	4.433	+	TSC_hg19_v1_chr11_+_76571985 AK308856 AK002100 AK316120 AK295327 AK295142 AK294978 BC049837 BC063034 AK293800 BC073853 CU687264	-163898	+	TSC_hg19_v1_chr11_+_76571961 NM_018367 AK315000 AF327353 AF214454	-163959	+	TSC_hg19_v1_chr11_+_76494400 NM_015516 AK091475 AX747009 AK075476 AK313405 AY358317 BC020975	-241614	+	NM_138706 AK127544 AK292773 TSC_hg19_v1_chr11_+_76745441 AK313682 AK172863 BC103908 BC103909 BC103910	9568	+	TSC_hg19_v1_chr11_+_76778017 BC018123 NM_004055 AK128124 AK313132 AK310978 AK094150 AB209087	42136	+	CU686775 BC069115 BC069365 NM_006189	77993	+	AK308856|ACER3|55331|alkaline ceramidase 3##AK002100|ACER3|55331|alkaline ceramidase 3##AK316120|ACER3|55331|alkaline ceramidase 3##AK295327|ACER3|55331|alkaline ceramidase 3##AK295142|ACER3|55331|alkaline ceramidase 3##AK294978|ACER3|55331|alkaline ceramidase 3##BC049837|ACER3|55331|alkaline ceramidase 3##BC063034|ACER3|55331|alkaline ceramidase 3##AK293800|ACER3|55331|alkaline ceramidase 3##BC073853|ACER3|55331|alkaline ceramidase 3##NM_018367|ACER3|55331|alkaline ceramidase 3##AK315000|ACER3|55331|alkaline ceramidase 3##AF327353|ACER3|55331|alkaline ceramidase 3##AF214454|ACER3|55331|alkaline ceramidase 3##NM_015516|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AK091475|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AK075476|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AK313405|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AY358317|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##BC020975|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##NM_138706|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK127544|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK292773|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK313682|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK172863|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103908|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103909|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103910|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC018123|CAPN5|726|calpain 5##NM_004055|CAPN5|726|calpain 5##AK128124|CAPN5|726|calpain 5##AK313132|CAPN5|726|calpain 5##AK310978|CAPN5|726|calpain 5##AK094150|CAPN5|726|calpain 5##AB209087|CAPN5|726|calpain 5##BC069115|OMP|4975|olfactory marker protein##BC069365|OMP|4975|olfactory marker protein##NM_006189|OMP|4975|olfactory marker protein	0.0	0.0	
chr19	18449507	18449622	reg1014408.p1	4.433	+	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	-15598	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	-15677	-	TSC_hg19_v1_chr19_-_18392451 X56681	-57096	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	1843	+	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	47418	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	58856	-	AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##X56681|JUND|3727|jun D proto-oncogene##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25	0.997294	0.0	
chr2	217096741	217096860	reg1014195.p1	4.433	+	TSC_hg19_v1_chr2_+_216986829 AK026166	-109933	+	TSC_hg19_v1_chr2_+_216974124 J04977 M30938 AK290740 BC095442 BC019027 AB489155 CU676354 DQ892660 DQ895925	-122661	+	TSC_hg19_v1_chr2_+_216974112 AK222603	-122691	+	TSC_hg19_v1_chr2_-_217236666 AB037820 NM_020814	139907	-	NM_014140 TSC_hg19_v1_chr2_+_217277188 AK023780	180398	+	TSC_hg19_v1_chr2_+_217277487 NM_001127207 AF432223 BC043341	180678	+	AK026166|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##J04977|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##M30938|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK290740|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC095442|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##BC019027|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ892660|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##DQ895925|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AK222603|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)##AB037820|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_020814|MARCH4|57574|membrane-associated ring finger (C3HC4) 4##NM_014140|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AK023780|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##NM_001127207|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##AF432223|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1##BC043341|SMARCAL1|50485|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	1.702528	0.0	denovo_WM_7:15:0.850	denovo_WM_7:36:0.704
chr2	42787460	42787571	reg1010146.p1	4.433	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-65813	+	TSC_hg19_v1_chr2_-_42721118 AF454547 AF454548 BC071558 AF348982 NM_133329 NM_172344	-66312	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	-66957	-	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	8206	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	8382	+	AY158687 AB528920 AB083055 BC063549 NM_148962	203785	-	AK127245|MTA3|57504|metastasis associated 1 family, member 3##AF454547|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF454548|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##BC071558|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF348982|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##NM_133329|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##NM_172344|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK027304|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1	0.33043	0.0	denovo_WM_7:-61:0.330
chr5	162251479	162251659	reg1014869.p1	4.433	+	NM_000816 NM_198903 NM_198904 BC052926 BC036030 X15376 BC059389 BC069348 BC074795 AK315200 AK299640	-756724	+	NM_001127648 AB590312 DQ890915	-973810	+	NM_001127647	-974178	+	TSC_hg19_v1_chr5_+_162864606 AK316234 NM_004060 NM_199246 AK297190 AK312913 BC007093 BX538035 D78341 L49504 BC000196	613052	+	AB528197 AM392736 AM393438 FJ215684 AK094647 TSC_hg19_v1_chr5_-_162887097	635509	-	AK311957 TSC_hg19_v1_chr5_-_162887119 BC017934 BX538290 NM_145266	635564	-	NM_000816|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198903|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_198904|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC052926|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC036030|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##X15376|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC059389|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC069348|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##BC074795|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK315200|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##AK299640|GABRG2|2566|gamma-aminobutyric acid (GABA) A receptor, gamma 2##NM_001127648|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##DQ890915|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_001127647|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK316234|CCNG1|900|cyclin G1##NM_004060|CCNG1|900|cyclin G1##NM_199246|CCNG1|900|cyclin G1##AK297190|CCNG1|900|cyclin G1##AK312913|CCNG1|900|cyclin G1##BC007093|CCNG1|900|cyclin G1##BX538035|CCNG1|900|cyclin G1##D78341|CCNG1|900|cyclin G1##L49504|CCNG1|900|cyclin G1##BC000196|CCNG1|900|cyclin G1##AM392736|NUDCD2|134492|NudC domain containing 2##AM393438|NUDCD2|134492|NudC domain containing 2##FJ215684|NUDCD2|134492|NudC domain containing 2##AK311957|NUDCD2|134492|NudC domain containing 2##BC017934|NUDCD2|134492|NudC domain containing 2##BX538290|NUDCD2|134492|NudC domain containing 2##NM_145266|NUDCD2|134492|NudC domain containing 2	0.0	0.0	
chr6	15732742	15732853	reg1011916.p1	4.433	+	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	-69507	-	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	-69620	-	TSC_hg19_v1_chr6_+_15249113 AK303610	-483684	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	396505	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	396640	+	TSC_hg19_v1_chr6_+_16143281 AK026739	410513	+	NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein	0.086679	0.0	
chr1	11025283	11025463	reg1003980.p1	4.432	+	DQ217660 AK092289 AX747454 NM_001079843 NM_017766	-168668	-	TSC_hg19_v1_chr1_-_10754567 AK311700 AK293839	-270822	-	TSC_hg19_v1_chr1_+_10535017 AK293684 AK307416 NM_004565 AK298136 AK002194 BC006327 AK310726 BC017848 BC054017 AB017546 AF045186 AK313046 AB527589 CR450321 CR542083 CU675355 DQ892775 DQ895905	-490362	+	NM_001170754	16720	-	NM_007375 TSC_hg19_v1_chr1_+_11072715 AK299454 AK312416 BC001487 BC095435 BC071657 AL050265 AK222754 AK295920	47337	+	Y18282 TSC_hg19_v1_chr1_-_11107270 Y18283 X98400 Y09926 BC052299 BC067359 BC080556 Y18281 Y18284 AB008047	81846	-	DQ217660|CASZ1|54897|castor zinc finger 1##AK092289|CASZ1|54897|castor zinc finger 1##NM_001079843|CASZ1|54897|castor zinc finger 1##NM_017766|CASZ1|54897|castor zinc finger 1##AK311700|CASZ1|54897|castor zinc finger 1##AK293839|CASZ1|54897|castor zinc finger 1##AK293684|PEX14|5195|peroxisomal biogenesis factor 14##AK307416|PEX14|5195|peroxisomal biogenesis factor 14##NM_004565|PEX14|5195|peroxisomal biogenesis factor 14##AK298136|PEX14|5195|peroxisomal biogenesis factor 14##AK002194|PEX14|5195|peroxisomal biogenesis factor 14##BC006327|PEX14|5195|peroxisomal biogenesis factor 14##AK310726|PEX14|5195|peroxisomal biogenesis factor 14##BC017848|PEX14|5195|peroxisomal biogenesis factor 14##BC054017|PEX14|5195|peroxisomal biogenesis factor 14##AB017546|PEX14|5195|peroxisomal biogenesis factor 14##AF045186|PEX14|5195|peroxisomal biogenesis factor 14##AK313046|PEX14|5195|peroxisomal biogenesis factor 14##CR450321|PEX14|5195|peroxisomal biogenesis factor 14##CR542083|PEX14|5195|peroxisomal biogenesis factor 14##DQ892775|PEX14|5195|peroxisomal biogenesis factor 14##DQ895905|PEX14|5195|peroxisomal biogenesis factor 14##NM_001170754|C1orf127|148345|chromosome 1 open reading frame 127##NM_007375|TARDBP|23435|TAR DNA binding protein##AK299454|TARDBP|23435|TAR DNA binding protein##AK312416|TARDBP|23435|TAR DNA binding protein##BC001487|TARDBP|23435|TAR DNA binding protein##BC095435|TARDBP|23435|TAR DNA binding protein##BC071657|TARDBP|23435|TAR DNA binding protein##AL050265|TARDBP|23435|TAR DNA binding protein##AK222754|TARDBP|23435|TAR DNA binding protein##AK295920|TARDBP|23435|TAR DNA binding protein##Y18282|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18283|MASP2|10747|mannan-binding lectin serine peptidase 2##X98400|MASP2|10747|mannan-binding lectin serine peptidase 2##Y09926|MASP2|10747|mannan-binding lectin serine peptidase 2##BC052299|MASP2|10747|mannan-binding lectin serine peptidase 2##BC067359|MASP2|10747|mannan-binding lectin serine peptidase 2##BC080556|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18281|MASP2|10747|mannan-binding lectin serine peptidase 2##Y18284|MASP2|10747|mannan-binding lectin serine peptidase 2##AB008047|MASP2|10747|mannan-binding lectin serine peptidase 2	0.820974	0.0	denovo_WM_7:50:0.543	denovo_WM_7:52:0.267
chr12	8231134	8231208	reg1011051.p1	4.432	+	TSC_hg19_v1_chr12_-_8219032 U62027	-12155	-	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	-12218	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	-45681	+	TSC_hg19_v1_chr12_+_8234872 NM_015509 AK074880 AK074858 AK074923 AK303675 AK314424 BC110876 AL050272 AK290537 BC002888	3680	+	AF067800 NM_016184 NM_194447 NM_194448 NM_194450 AJ133532 AF328684 BC117439 BC117441 AF109146 BC074822 BC074874 AF200738 HQ258754 EU196761	45196	+	NM_001004328	93978	+	U62027|C3AR1|719|complement component 3a receptor 1##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##NM_018416|FOXJ2|55810|forkhead box J2##NM_015509|NECAP1|25977|NECAP endocytosis associated 1##AK074880|NECAP1|25977|NECAP endocytosis associated 1##AK074858|NECAP1|25977|NECAP endocytosis associated 1##AK074923|NECAP1|25977|NECAP endocytosis associated 1##AK303675|NECAP1|25977|NECAP endocytosis associated 1##AK314424|NECAP1|25977|NECAP endocytosis associated 1##BC110876|NECAP1|25977|NECAP endocytosis associated 1##AL050272|NECAP1|25977|NECAP endocytosis associated 1##AK290537|NECAP1|25977|NECAP endocytosis associated 1##BC002888|NECAP1|25977|NECAP endocytosis associated 1##AF067800|CLEC4A|50856|C-type lectin domain family 4, member A##NM_016184|CLEC4A|50856|C-type lectin domain family 4, member A##NM_194447|CLEC4A|50856|C-type lectin domain family 4, member A##NM_194448|CLEC4A|50856|C-type lectin domain family 4, member A##NM_194450|CLEC4A|50856|C-type lectin domain family 4, member A##AJ133532|CLEC4A|50856|C-type lectin domain family 4, member A##AF328684|CLEC4A|50856|C-type lectin domain family 4, member A##BC117439|CLEC4A|50856|C-type lectin domain family 4, member A##BC117441|CLEC4A|50856|C-type lectin domain family 4, member A##AF109146|CLEC4A|50856|C-type lectin domain family 4, member A##BC074822|CLEC4A|50856|C-type lectin domain family 4, member A##BC074874|CLEC4A|50856|C-type lectin domain family 4, member A##AF200738|CLEC4A|50856|C-type lectin domain family 4, member A##HQ258754|CLEC4A|50856|C-type lectin domain family 4, member A##NM_001004328|ZNF705A|440077|zinc finger protein 705A	0.630935	0.525616	CTCF.p2:-2:0.526	denovo_WM_7:39:0.326
chr15	59414336	59414465	reg1019854.p1	4.432	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-17029	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-55322	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-134121	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	84652	+	AB290177 TSC_hg19_v1_chr15_-_59665055	250654	-	TSC_hg19_v1_chr15_-_59665065 AK291688	250666	-	NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE	1.033001	0.0	
chr6	159074456	159074633	reg1014884.p1	4.432	+	TSC_hg19_v1_chr6_+_159071070 NM_001009991 NM_001242384 NM_001242394 NM_001242395 AK092729 AK298712 AX747692 BC085612	-3490	+	AB590427 CR456931 DQ892606 DQ892607 DQ895846 DQ895847 EU862237 U56255 TSC_hg19_v1_chr6_-_159065772 D50663 BC105588 BC029412 AK315601 NM_006519	-8770	-	BC033450 TSC_hg19_v1_chr6_+_158957752	-116842	+	J05021 X51521 TSC_hg19_v1_chr6_-_159239246	164678	-	TSC_hg19_v1_chr6_-_159239264 BC013903 AK299456 BC068458	164715	-	TSC_hg19_v1_chr6_-_159239276 NM_003379	164761	-	NM_001009991|SYTL3|94120|synaptotagmin-like 3##NM_001242384|SYTL3|94120|synaptotagmin-like 3##NM_001242394|SYTL3|94120|synaptotagmin-like 3##NM_001242395|SYTL3|94120|synaptotagmin-like 3##AK092729|SYTL3|94120|synaptotagmin-like 3##AK298712|SYTL3|94120|synaptotagmin-like 3##BC085612|SYTL3|94120|synaptotagmin-like 3##CR456931|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ892606|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ892607|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ895846|DYNLT1|6993|dynein, light chain, Tctex-type 1##DQ895847|DYNLT1|6993|dynein, light chain, Tctex-type 1##EU862237|DYNLT1|6993|dynein, light chain, Tctex-type 1##U56255|DYNLT1|6993|dynein, light chain, Tctex-type 1##D50663|DYNLT1|6993|dynein, light chain, Tctex-type 1##BC105588|DYNLT1|6993|dynein, light chain, Tctex-type 1##BC029412|DYNLT1|6993|dynein, light chain, Tctex-type 1##AK315601|DYNLT1|6993|dynein, light chain, Tctex-type 1##NM_006519|DYNLT1|6993|dynein, light chain, Tctex-type 1##BC033450|TMEM181|57583|transmembrane protein 181##J05021|EZR|7430|ezrin##X51521|EZR|7430|ezrin##BC013903|EZR|7430|ezrin##AK299456|EZR|7430|ezrin##BC068458|EZR|7430|ezrin##NM_003379|EZR|7430|ezrin	0.989258	0.0	denovo_WM_7:1:0.509	denovo_WM_7:2:0.356
chr6	35655103	35655210	reg1010030.p1	4.432	+	CU689498 EU446712 BC065261 NM_003322 BC032714 BC001761 BC021268 AB593124 AB593123 DQ426893	-174482	-	BC010053 BC027877 BC091488 AF142482 TSC_hg19_v1_chr6_-_35464854 NM_003214	-190344	-	AB082926 BC006791 U12404 TSC_hg19_v1_chr6_+_35436204 BC011366	-218953	+	TSC_hg19_v1_chr6_-_35656616 HM245391 AB209893	1464	-	TSC_hg19_v1_chr6_-_35656693 BC111050 AK222807 AK302704 AK303356 AK312422 BX647390 NM_001145776 AF194172 U71321 NM_001145777 NM_004117	1550	-	BC042605 NM_001145775	41203	-	EU446712|TULP1|7287|tubby like protein 1##BC065261|TULP1|7287|tubby like protein 1##NM_003322|TULP1|7287|tubby like protein 1##BC032714|TULP1|7287|tubby like protein 1##AB593124|TULP1|7287|tubby like protein 1##AB593123|TULP1|7287|tubby like protein 1##DQ426893|TULP1|7287|tubby like protein 1##BC010053|TEAD3|7005|TEA domain family member 3##BC027877|TEAD3|7005|TEA domain family member 3##BC091488|TEAD3|7005|TEA domain family member 3##AF142482|TEAD3|7005|TEA domain family member 3##NM_003214|TEAD3|7005|TEA domain family member 3##AB082926|RPL10A|4736|ribosomal protein L10a##BC006791|RPL10A|4736|ribosomal protein L10a##U12404|RPL10A|4736|ribosomal protein L10a##BC011366|RPL10A|4736|ribosomal protein L10a##HM245391|FKBP5|2289|FK506 binding protein 5##AB209893|FKBP5|2289|FK506 binding protein 5##BC111050|FKBP5|2289|FK506 binding protein 5##AK222807|FKBP5|2289|FK506 binding protein 5##AK302704|FKBP5|2289|FK506 binding protein 5##AK303356|FKBP5|2289|FK506 binding protein 5##AK312422|FKBP5|2289|FK506 binding protein 5##BX647390|FKBP5|2289|FK506 binding protein 5##NM_001145776|FKBP5|2289|FK506 binding protein 5##AF194172|FKBP5|2289|FK506 binding protein 5##U71321|FKBP5|2289|FK506 binding protein 5##NM_001145777|FKBP5|2289|FK506 binding protein 5##NM_004117|FKBP5|2289|FK506 binding protein 5##BC042605|FKBP5|2289|FK506 binding protein 5##NM_001145775|FKBP5|2289|FK506 binding protein 5	0.0	0.0	
chr6	42501671	42501804	reg1012431.p2	4.432	+	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	-81914	-	TSC_hg19_v1_chr6_-_42185603 NM_018141	-316120	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-316137	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	30013	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	30040	+	TSC_hg19_v1_chr6_+_42531956 AY061884 CU687884	30267	+	AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##AY061884|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.991956	0.0	denovo_WM_7:-53:0.837
chrX	24187544	24187724	reg1014931.p2	4.432	+	X59739 X59740 TSC_hg19_v1_chrX_+_24167864	-19762	+	AB209892 NM_001178086 NM_001178095 X59738 TSC_hg19_v1_chrX_+_24167845 NM_001178084 NM_001178085 NM_003410	-19842	+	TSC_hg19_v1_chrX_+_24073072 AK222577 AK290397 AK312247 AB590041 CU676476 DQ891794 DQ894977 AB451230 AB451353 L19161	-114556	+	NM_001136233	143797	-	NM_001136234	193243	+	NM_001142386 NM_005391 AK301965 TSC_hg19_v1_chrX_+_24483405 BC015948 L42452 CU677533	295823	+	X59739|ZFX|7543|zinc finger protein, X-linked##X59740|ZFX|7543|zinc finger protein, X-linked##AB209892|ZFX|7543|zinc finger protein, X-linked##NM_001178086|ZFX|7543|zinc finger protein, X-linked##NM_001178095|ZFX|7543|zinc finger protein, X-linked##X59738|ZFX|7543|zinc finger protein, X-linked##NM_001178084|ZFX|7543|zinc finger protein, X-linked##NM_001178085|ZFX|7543|zinc finger protein, X-linked##NM_003410|ZFX|7543|zinc finger protein, X-linked##AK222577|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK290397|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AK312247|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ891794|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##DQ894977|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451230|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##AB451353|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##L19161|EIF2S3|1968|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa##NM_001136233|FAM48B2|170067|family with sequence similarity 48, member B2##NM_001136234|FAM48B1|100130302|family with sequence similarity 48, member B1##NM_001142386|PDK3|5165|pyruvate dehydrogenase kinase, isozyme 3##NM_005391|PDK3|5165|pyruvate dehydrogenase kinase, isozyme 3##AK301965|PDK3|5165|pyruvate dehydrogenase kinase, isozyme 3##BC015948|PDK3|5165|pyruvate dehydrogenase kinase, isozyme 3##L42452|PDK3|5165|pyruvate dehydrogenase kinase, isozyme 3	0.999825	0.0	denovo_WM_7:84:0.419	denovo_WM_7:85:0.419
chr18	29004518	29004667	reg1013082.p1	4.431	+	AY177664 NM_001134453 NM_177986 AY168788 AY228236 BC132907 BC132909 AY227350	-47786	+	AF097935 NM_001942 X56654 AB591022	-106435	+	Z34522 NM_004948 NM_024421 X72925	-261811	-	AK290367 NM_001944 M76482	23152	+	NM_001943 TSC_hg19_v1_chr18_+_29078205 BC099655 BC099656 BC099657 Z26317 AK308408	73551	+	NM_000371 TSC_hg19_v1_chr18_+_29171839 AK312051 BC005310 BC020791 D00096 GU727633 K02091 M10605 X59498 AF162690 BT007189 CR456908 DQ778081 DQ839490 U19780	167205	+	AY177664|DSG4|147409|desmoglein 4##NM_001134453|DSG4|147409|desmoglein 4##NM_177986|DSG4|147409|desmoglein 4##AY168788|DSG4|147409|desmoglein 4##AY228236|DSG4|147409|desmoglein 4##BC132907|DSG4|147409|desmoglein 4##BC132909|DSG4|147409|desmoglein 4##AY227350|DSG4|147409|desmoglein 4##AF097935|DSG1|1828|desmoglein 1##NM_001942|DSG1|1828|desmoglein 1##X56654|DSG1|1828|desmoglein 1##Z34522|DSC1|1823|desmocollin 1##NM_004948|DSC1|1823|desmocollin 1##NM_024421|DSC1|1823|desmocollin 1##X72925|DSC1|1823|desmocollin 1##AK290367|DSG3|1830|desmoglein 3##NM_001944|DSG3|1830|desmoglein 3##M76482|DSG3|1830|desmoglein 3##NM_001943|DSG2|1829|desmoglein 2##BC099655|DSG2|1829|desmoglein 2##BC099656|DSG2|1829|desmoglein 2##BC099657|DSG2|1829|desmoglein 2##Z26317|DSG2|1829|desmoglein 2##AK308408|DSG2|1829|desmoglein 2##NM_000371|TTR|7276|transthyretin##AK312051|TTR|7276|transthyretin##BC005310|TTR|7276|transthyretin##BC020791|TTR|7276|transthyretin##D00096|TTR|7276|transthyretin##GU727633|TTR|7276|transthyretin##K02091|TTR|7276|transthyretin##M10605|TTR|7276|transthyretin##X59498|TTR|7276|transthyretin##AF162690|TTR|7276|transthyretin##BT007189|TTR|7276|transthyretin##CR456908|TTR|7276|transthyretin##DQ839490|TTR|7276|transthyretin##U19780|TTR|7276|transthyretin	0.015204	0.0	
chr18	656932	657010	reg1014599.p1	4.431	+	DQ980621 NM_199167 AF395889 D63813	-40276	+	BC025381 NM_014410 AK299319	-59962	+	BC029515 NM_004066 U03270 AK312047 CU688680 DQ890970 DQ894144	-76589	+	TSC_hg19_v1_chr18_+_657615 NM_001071 BC083512 AK223372 BC013919	575	+	AB062290 TSC_hg19_v1_chr18_+_657656 AK314140 X02308	677	+	BC002567 TSC_hg19_v1_chr18_+_657708 BC018858 AK292620 AB590362 DQ892149 AB077207 AB077208 BT006811	740	+	DQ980621|CLUL1|27098|clusterin-like 1 (retinal)##NM_199167|CLUL1|27098|clusterin-like 1 (retinal)##AF395889|CLUL1|27098|clusterin-like 1 (retinal)##D63813|CLUL1|27098|clusterin-like 1 (retinal)##BC025381|CLUL1|27098|clusterin-like 1 (retinal)##NM_014410|CLUL1|27098|clusterin-like 1 (retinal)##AK299319|CLUL1|27098|clusterin-like 1 (retinal)##BC029515|CETN1|1068|centrin, EF-hand protein, 1##NM_004066|CETN1|1068|centrin, EF-hand protein, 1##U03270|CETN1|1068|centrin, EF-hand protein, 1##AK312047|CETN1|1068|centrin, EF-hand protein, 1##DQ890970|CETN1|1068|centrin, EF-hand protein, 1##DQ894144|CETN1|1068|centrin, EF-hand protein, 1##NM_001071|TYMS|7298|thymidylate synthetase##BC083512|TYMS|7298|thymidylate synthetase##AK223372|TYMS|7298|thymidylate synthetase##BC013919|TYMS|7298|thymidylate synthetase##AB062290|TYMS|7298|thymidylate synthetase##AK314140|TYMS|7298|thymidylate synthetase##X02308|TYMS|7298|thymidylate synthetase##BC002567|TYMS|7298|thymidylate synthetase##BC018858|TYMS|7298|thymidylate synthetase##AK292620|TYMS|7298|thymidylate synthetase##DQ892149|TYMS|7298|thymidylate synthetase##AB077207|TYMS|7298|thymidylate synthetase##AB077208|TYMS|7298|thymidylate synthetase##BT006811|TYMS|7298|thymidylate synthetase	2.030368	0.0	denovo_WM_7:-91:0.450	denovo_WM_7:-92:0.450
chr21	33651295	33651423	reg1009755.p1	4.431	+	TSC_hg19_v1_chr21_+_33245863 AJ271722 NM_014586	-405639	+	TSC_hg19_v1_chr21_-_33104407 BC014921 NM_001145444 NM_001145445 NM_020706	-546923	-	BC043353 TSC_hg19_v1_chr21_-_33104396	-546966	-	CU692128 TSC_hg19_v1_chr21_-_33651338 AF387845 AF231921 AK075281 BC042917 NM_018944 AK312073	36	-	AF454915 AF454916 NM_178817 NM_206898	12764	+	AF231919 TSC_hg19_v1_chr21_-_33765328 NM_014825	113897	-	AJ271722|HUNK|30811|hormonally up-regulated Neu-associated kinase##NM_014586|HUNK|30811|hormonally up-regulated Neu-associated kinase##BC014921|SCAF4|57466|SR-related CTD-associated factor 4##NM_001145444|SCAF4|57466|SR-related CTD-associated factor 4##NM_001145445|SCAF4|57466|SR-related CTD-associated factor 4##NM_020706|SCAF4|57466|SR-related CTD-associated factor 4##BC043353|SCAF4|57466|SR-related CTD-associated factor 4##AF387845|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AF231921|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AK075281|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##BC042917|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##NM_018944|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AK312073|MIS18A|54069|MIS18 kinetochore protein homolog A (S. pombe)##AF454915|MRAP|56246|melanocortin 2 receptor accessory protein##AF454916|MRAP|56246|melanocortin 2 receptor accessory protein##NM_178817|MRAP|56246|melanocortin 2 receptor accessory protein##NM_206898|MRAP|56246|melanocortin 2 receptor accessory protein##AF231919|URB1|9875|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)##NM_014825|URB1|9875|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	0.0	0.398239	CTCF.p2:74:0.398
chr9	33290218	33290380	reg1009489.p2	4.431	+	TSC_hg19_v1_chr9_+_33265046 BC006974 BC020796 AF132968 AF161525 AB528724 CU675479 DQ893179 DQ896479 DQ896480	-25240	+	NM_001195536 NM_016410 TSC_hg19_v1_chr9_+_33265035 BC016698 BC007457 AK315455 AK024753 BC018603 BC021168 AK295744	-25343	+	AM392568 BC014774 TSC_hg19_v1_chr9_-_33264707 AK096038 AK316577 AF116273 BC002407 AK222749 AF022224 U46917 BC001936 Z35491 NM_001172415 NM_004323	-25691	-	NM_002504 NM_147133 NM_147134 TSC_hg19_v1_chr9_+_33290509 AF332009 AK291643 AL832342	175	+	TSC_hg19_v1_chr9_+_33290543 AK225750 BC012151 AB385216 DQ893676 DQ895843	254	+	AK310456 TSC_hg19_v1_chr9_-_33395273	104970	-	BC006974|CHMP5|51510|charged multivesicular body protein 5##BC020796|CHMP5|51510|charged multivesicular body protein 5##AF132968|CHMP5|51510|charged multivesicular body protein 5##AF161525|CHMP5|51510|charged multivesicular body protein 5##DQ893179|CHMP5|51510|charged multivesicular body protein 5##DQ896479|CHMP5|51510|charged multivesicular body protein 5##DQ896480|CHMP5|51510|charged multivesicular body protein 5##NM_001195536|CHMP5|51510|charged multivesicular body protein 5##NM_016410|CHMP5|51510|charged multivesicular body protein 5##BC016698|CHMP5|51510|charged multivesicular body protein 5##BC007457|CHMP5|51510|charged multivesicular body protein 5##AK315455|CHMP5|51510|charged multivesicular body protein 5##AK024753|CHMP5|51510|charged multivesicular body protein 5##BC018603|CHMP5|51510|charged multivesicular body protein 5##BC021168|CHMP5|51510|charged multivesicular body protein 5##AK295744|CHMP5|51510|charged multivesicular body protein 5##AM392568|BAG1|573|BCL2-associated athanogene##BC014774|BAG1|573|BCL2-associated athanogene##AK096038|BAG1|573|BCL2-associated athanogene##AK316577|BAG1|573|BCL2-associated athanogene##AF116273|BAG1|573|BCL2-associated athanogene##AK222749|BAG1|573|BCL2-associated athanogene##AF022224|BAG1|573|BCL2-associated athanogene##U46917|BAG1|573|BCL2-associated athanogene##BC001936|BAG1|573|BCL2-associated athanogene##Z35491|BAG1|573|BCL2-associated athanogene##NM_001172415|BAG1|573|BCL2-associated athanogene##NM_004323|BAG1|573|BCL2-associated athanogene##NM_002504|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_147133|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_147134|NFX1|4799|nuclear transcription factor, X-box binding 1##AF332009|NFX1|4799|nuclear transcription factor, X-box binding 1##AK291643|NFX1|4799|nuclear transcription factor, X-box binding 1##AL832342|NFX1|4799|nuclear transcription factor, X-box binding 1##AK225750|NFX1|4799|nuclear transcription factor, X-box binding 1##BC012151|NFX1|4799|nuclear transcription factor, X-box binding 1##DQ893676|NFX1|4799|nuclear transcription factor, X-box binding 1##DQ895843|NFX1|4799|nuclear transcription factor, X-box binding 1##AK310456|AQP7|364|aquaporin 7	0.963503	0.0	denovo_WM_7:-4:0.901
chrX	10026609	10026737	reg1006666.p1	4.431	+	BC098455 NM_015691	-42880	+	NM_001195081	-91276	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-272130	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	98381	+	AF041210 AB384764 AY539988 AY539994 AY540022 AY540023 EU446510 NM_001193278 NM_001193279 NM_001193280 NM_001193281	508886	-	AF035360 NM_001193277 AY112903	518231	-	BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC140866|SHROOM2|357|shroom family member 2##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4##AF041210|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539988|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539994|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540022|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540023|MID1|4281|midline 1 (Opitz/BBB syndrome)##EU446510|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193278|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193279|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193280|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193281|MID1|4281|midline 1 (Opitz/BBB syndrome)##AF035360|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193277|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY112903|MID1|4281|midline 1 (Opitz/BBB syndrome)	1.91382	0.0	denovo_WM_7:84:0.828
chrX	64915318	64915436	reg1008357.p1	4.431	+	TSC_hg19_v1_chrX_+_64887602 AK309986 M69066 AF295356 DQ892653 DQ895892	-27729	+	TSC_hg19_v1_chrX_+_64887542 BC001112 BC011827 BC017293	-27830	+	NM_002444 TSC_hg19_v1_chrX_+_64887520	-27860	+	TSC_hg19_v1_chrX_+_65235302 DQ680071 DQ680072	319914	+	DQ891770 DQ894953 BC010525 AJ132502 AK293215 AK298389 AK075153 AK297050 AK301417 AK075171 NM_001100431 NM_001184830 NM_001184831 NM_007268	344525	-	NM_138737 TSC_hg19_v1_chrX_+_65382512	467098	+	AK309986|MSN|4478|moesin##M69066|MSN|4478|moesin##DQ892653|MSN|4478|moesin##DQ895892|MSN|4478|moesin##BC001112|MSN|4478|moesin##BC011827|MSN|4478|moesin##BC017293|MSN|4478|moesin##NM_002444|MSN|4478|moesin##DQ891770|VSIG4|11326|V-set and immunoglobulin domain containing 4##DQ894953|VSIG4|11326|V-set and immunoglobulin domain containing 4##BC010525|VSIG4|11326|V-set and immunoglobulin domain containing 4##AJ132502|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK293215|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK298389|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075153|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK297050|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK301417|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075171|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001100431|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184830|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184831|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_007268|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_138737|HEPH|9843|hephaestin	1.975276	0.0	denovo_WM_7:0:0.841	denovo_WM_7:14:0.745
chr10	129867770	129867872	reg1012367.p2	4.430	+	BX648180 NM_130435 BC071573 TSC_hg19_v1_chr10_+_129845875 AK290414 AJ430580 AJ315969	-21967	+	TSC_hg19_v1_chr10_+_129705366 AF406557 BC050062 X54134	-162366	+	TSC_hg19_v1_chr10_+_129705334 BC031078 NM_006504	-162499	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	56707	-	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	1397650	+	TSC_hg19_v1_chr10_+_131265507 BC000824	1397693	+	BX648180|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_130435|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC071573|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AK290414|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ430580|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ315969|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AF406557|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC050062|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##X54134|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC031078|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_006504|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase	0.147919	0.974078	CTCF.p2:-13:0.974
chr11	68273848	68273998	reg1010967.p1	4.430	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	-45714	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-158487	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-193834	+	AK001920 TSC_hg19_v1_chr11_+_68367929	93953	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	178060	+	TSC_hg19_v1_chr11_+_68452011 BC030241	178097	+	NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide##BC030241|GAL|51083|galanin prepropeptide	1.988376	0.0	denovo_WM_7:-13:0.330	denovo_WM_7:-14:0.264	denovo_WM_7:-31:0.265	denovo_WM_7:-32:0.331
chr12	122056842	122057022	reg1011950.p1	4.430	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-38018	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-38673	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-151858	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	7711	+	BC057760 NM_173855	50627	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	93812	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	0.080216	0.0	
chr1	22357348	22357446	reg1013009.p1	4.430	+	TSC_hg19_v1_chr1_+_22352003 AF161506 BC016053	-5385	+	BC005918 BC015103 D00306 NM_005747 BC007028 AK225620 AK308514 BC008383 CU675183 CU678941 DQ893182 DQ896490	-29240	+	NM_007352 AK092382 AK308518 AX747509 BC005216 M18692 AK315798 AK308510 M16630	-53918	+	NM_001039802 NM_001791 NM_044472 TSC_hg19_v1_chr1_+_22379201 BC018266 AL121734 AL121735 BC002711 AL121736 AK311375 AK316449 AK303994 AK297465 M57298	21773	+	TSC_hg19_v1_chr1_+_22379812 AL121737	22408	+	AY009398 BT020125 AB590593 AB061675 AY358947 AF316543 NM_030761 BC057781	112114	-	AF161506|LINC00339|29092|long intergenic non-protein coding RNA 339##BC016053|LINC00339|29092|long intergenic non-protein coding RNA 339##BC005918|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC015103|CELA3A|10136|chymotrypsin-like elastase family, member 3A##D00306|CELA3A|10136|chymotrypsin-like elastase family, member 3A##NM_005747|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC007028|CELA3A|10136|chymotrypsin-like elastase family, member 3A##AK225620|CELA3A|10136|chymotrypsin-like elastase family, member 3A##AK308514|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC008383|CELA3A|10136|chymotrypsin-like elastase family, member 3A##DQ893182|CELA3A|10136|chymotrypsin-like elastase family, member 3A##DQ896490|CELA3A|10136|chymotrypsin-like elastase family, member 3A##NM_007352|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK092382|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK308518|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC005216|CELA3B|23436|chymotrypsin-like elastase family, member 3B##M18692|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK315798|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK308510|CELA3A|10136|chymotrypsin-like elastase family, member 3A##M16630|CELA3B|23436|chymotrypsin-like elastase family, member 3B##NM_001039802|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_001791|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_044472|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC018266|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121734|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121735|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC002711|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121736|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK311375|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK316449|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK303994|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK297465|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##M57298|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121737|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AY009398|WNT4|54361|wingless-type MMTV integration site family, member 4##BT020125|WNT4|54361|wingless-type MMTV integration site family, member 4##AB061675|WNT4|54361|wingless-type MMTV integration site family, member 4##AY358947|WNT4|54361|wingless-type MMTV integration site family, member 4##AF316543|WNT4|54361|wingless-type MMTV integration site family, member 4##NM_030761|WNT4|54361|wingless-type MMTV integration site family, member 4##BC057781|WNT4|54361|wingless-type MMTV integration site family, member 4	0.0	0.0	
chr14	73939638	73939818	reg1004473.p3	4.430	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-14437	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-14461	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-14496	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	17897	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	17935	+	TSC_hg19_v1_chr14_+_73957674 AY390535	17945	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.0	0.0	
chr20	34000364	34000540	reg1014305.p2	4.430	+	TSC_hg19_v1_chr20_-_33999791 AK225281 AK293149 BC119013 BC122862 AY050659 NM_001184977 NM_018244 NM_199487	-590	-	BC008871 AB528278 AM392884 AM393853 TSC_hg19_v1_chr20_-_33999777 AK001712 AK022650 AK022742 AK225557 AK293516 AK300130 AK302133 AK308819 BC105791	-683	-	BC113483 AK091116 AX746786 NM_178468	-120239	-	AB593125 U13660 NM_000557	25538	-	TSC_hg19_v1_chr20_+_34042987 AK307861 AB621828 AF049105 NM_007186	42622	+	AK058089 AK310337 NM_001145350	117011	-	AK225281|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293149|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC119013|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC122862|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AY050659|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_001184977|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_018244|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_199487|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC008871|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM392884|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM393853|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK001712|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022650|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022742|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225557|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293516|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK300130|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK302133|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK308819|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC105791|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC113483|FAM83C|128876|family with sequence similarity 83, member C##AK091116|FAM83C|128876|family with sequence similarity 83, member C##NM_178468|FAM83C|128876|family with sequence similarity 83, member C##AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5##AK307861|CEP250|11190|centrosomal protein 250kDa##AF049105|CEP250|11190|centrosomal protein 250kDa##NM_007186|CEP250|11190|centrosomal protein 250kDa##AK058089|C20orf173|140873|chromosome 20 open reading frame 173##AK310337|C20orf173|140873|chromosome 20 open reading frame 173##NM_001145350|C20orf173|140873|chromosome 20 open reading frame 173	1.991371	0.0	denovo_WM_7:-7:0.270	denovo_WM_7:-8:0.727	denovo_WM_7:-23:0.860
chr6	108919659	108919788	reg1011489.p1	4.430	+	TSC_hg19_v1_chr6_+_108882119 AJ001589 AK122861 AB591039 CU676878	-37466	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	-37648	+	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	-38700	+	TSC_hg19_v1_chr6_+_109169624 AK294574 NM_032131 AK292499 BC030603	249898	+	AF033121 NM_001199934	410467	-	TSC_hg19_v1_chr6_-_109330747 AF033120	410993	-	AJ001589|FOXO3|2309|forkhead box O3##AK122861|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##AK294574|ARMC2|84071|armadillo repeat containing 2##NM_032131|ARMC2|84071|armadillo repeat containing 2##AK292499|ARMC2|84071|armadillo repeat containing 2##BC030603|ARMC2|84071|armadillo repeat containing 2##AF033121|SESN1|27244|sestrin 1##NM_001199934|SESN1|27244|sestrin 1##AF033120|SESN1|27244|sestrin 1	0.0	0.0	
chr6	34648972	34649152	reg1004079.p2	4.430	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-124966	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-166408	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-215158	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	15484	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	15564	-	NM_003093	75808	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	0.0	0.0	
chr9	5609033	5609165	reg1009042.p2	4.430	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-98436	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-158592	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-171219	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	20028	+	BC036853 TSC_hg19_v1_chr9_-_5630098	20991	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	223852	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.999511	0.0	denovo_WM_7:1:0.964
chr9	88555839	88555962	reg1011607.p2	4.430	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	-199029	-	U12140 TSC_hg19_v1_chr9_+_87285349	-1270568	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-1271148	+	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	174	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	278	+	TSC_hg19_v1_chr9_-_88714445 AY358593 BC001740 AK075542 AF236056	158525	-	AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AY358593|GOLM1|51280|golgi membrane protein 1##BC001740|GOLM1|51280|golgi membrane protein 1##AK075542|GOLM1|51280|golgi membrane protein 1##AF236056|GOLM1|51280|golgi membrane protein 1	0.0	0.0	
chr3	155572239	155572378	reg1013197.p1	4.429	+	D88152 TSC_hg19_v1_chr3_-_155572196 BC014416 AK312268 NM_001190992 NM_004733	-102	-	BC042198 AF115515 TSC_hg19_v1_chr3_-_155524068 BC064898 AK055701 NM_173657 AL832165 AK289890	-48247	-	BC113950 NM_014996	-150312	-	TSC_hg19_v1_chr3_+_155588290 NM_003875	15993	+	TSC_hg19_v1_chr3_+_155588438 AK302148 AK223399 AK300787	16126	+	TSC_hg19_v1_chr3_+_155588447 AK291504 BC012178	16147	+	D88152|SLC33A1|9197|solute carrier family 33 (acetyl-CoA transporter), member 1##BC014416|SLC33A1|9197|solute carrier family 33 (acetyl-CoA transporter), member 1##AK312268|SLC33A1|9197|solute carrier family 33 (acetyl-CoA transporter), member 1##NM_001190992|SLC33A1|9197|solute carrier family 33 (acetyl-CoA transporter), member 1##NM_004733|SLC33A1|9197|solute carrier family 33 (acetyl-CoA transporter), member 1##BC042198|C3orf33|285315|chromosome 3 open reading frame 33##AF115515|C3orf33|285315|chromosome 3 open reading frame 33##BC064898|C3orf33|285315|chromosome 3 open reading frame 33##AK055701|C3orf33|285315|chromosome 3 open reading frame 33##NM_173657|C3orf33|285315|chromosome 3 open reading frame 33##AL832165|C3orf33|285315|chromosome 3 open reading frame 33##AK289890|C3orf33|285315|chromosome 3 open reading frame 33##BC113950|PLCH1|23007|phospholipase C, eta 1##NM_014996|PLCH1|23007|phospholipase C, eta 1##NM_003875|GMPS|8833|guanine monphosphate synthetase##AK302148|GMPS|8833|guanine monphosphate synthetase##AK223399|GMPS|8833|guanine monphosphate synthetase##AK300787|GMPS|8833|guanine monphosphate synthetase##AK291504|GMPS|8833|guanine monphosphate synthetase##BC012178|GMPS|8833|guanine monphosphate synthetase	0.0	0.0	
chr6	64321056	64321179	reg1008232.p2	4.429	+	TSC_hg19_v1_chr6_+_64286554 U48296 AB385532 CU692824 DQ890715 DQ893895 EU831599 EU831686 AB451314 AB451444	-34507	+	TSC_hg19_v1_chr6_+_64282463 BC023975	-38574	+	TSC_hg19_v1_chr6_+_64282432 AK312526	-38682	+	TSC_hg19_v1_chr6_+_64345706 AK055678	24573	+	TSC_hg19_v1_chr6_+_64345719 AK307869	24599	+	TSC_hg19_v1_chr6_+_64345729 AK315868 AK298580	24706	+	U48296|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##DQ890715|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##DQ893895|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##EU831599|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##EU831686|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AB451314|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AB451444|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC023975|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AK312526|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AK055678|PHF3|23469|PHD finger protein 3##AK307869|PHF3|23469|PHD finger protein 3##AK315868|PHF3|23469|PHD finger protein 3##AK298580|PHF3|23469|PHD finger protein 3	0.0	0.0	
chr8	27686226	27686385	reg1009785.p1	4.429	+	AF306677 AF306678 TSC_hg19_v1_chr8_+_27632070 AF306675 AY882862 NM_001017420 AK124215 AF306679 AL832666 BC017933 BC034641	-54306	+	BC006239 TSC_hg19_v1_chr8_-_27630126 BC054039 BC065295 BC110391 AK027900 AK316015 BC049197 AK311437 BC032588 AK292875 AK294848 AK001715 NM_018246	-56171	-	TSC_hg19_v1_chr8_+_27491466 AB007829 AB007830 NM_016240 NM_182826 BC075067 BC075068	-194727	+	TSC_hg19_v1_chr8_-_27695325 AF189722 AB027250 AK027291 AF237709 BC015191 AB027249 NM_018492	9042	-	TSC_hg19_v1_chr8_-_27695574 AK301836	9254	-	NM_173833	164063	-	AF306677|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306678|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306675|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AY882862|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##NM_001017420|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AK124215|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AF306679|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##AL832666|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC017933|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC034641|ESCO2|157570|establishment of cohesion 1 homolog 2 (S. cerevisiae)##BC006239|CCDC25|55246|coiled-coil domain containing 25##BC054039|CCDC25|55246|coiled-coil domain containing 25##BC065295|CCDC25|55246|coiled-coil domain containing 25##BC110391|CCDC25|55246|coiled-coil domain containing 25##AK027900|CCDC25|55246|coiled-coil domain containing 25##AK316015|CCDC25|55246|coiled-coil domain containing 25##BC049197|CCDC25|55246|coiled-coil domain containing 25##AK311437|CCDC25|55246|coiled-coil domain containing 25##BC032588|CCDC25|55246|coiled-coil domain containing 25##AK292875|CCDC25|55246|coiled-coil domain containing 25##AK294848|CCDC25|55246|coiled-coil domain containing 25##AK001715|CCDC25|55246|coiled-coil domain containing 25##NM_018246|CCDC25|55246|coiled-coil domain containing 25##AB007829|SCARA3|51435|scavenger receptor class A, member 3##AB007830|SCARA3|51435|scavenger receptor class A, member 3##NM_016240|SCARA3|51435|scavenger receptor class A, member 3##NM_182826|SCARA3|51435|scavenger receptor class A, member 3##BC075067|SCARA3|51435|scavenger receptor class A, member 3##BC075068|SCARA3|51435|scavenger receptor class A, member 3##AF189722|PBK|55872|PDZ binding kinase##AB027250|PBK|55872|PDZ binding kinase##AK027291|PBK|55872|PDZ binding kinase##AF237709|PBK|55872|PDZ binding kinase##BC015191|PBK|55872|PDZ binding kinase##AB027249|PBK|55872|PDZ binding kinase##NM_018492|PBK|55872|PDZ binding kinase##AK301836|PBK|55872|PDZ binding kinase##NM_173833|SCARA5|286133|scavenger receptor class A, member 5 (putative)	1.035578	0.0	
chr8	66742224	66742359	reg1007484.p1	4.429	+	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	-41040	-	NM_001145838 CU692168 BX537854 D13634	-160124	+	NM_001145839 NM_014637 TSC_hg19_v1_chr8_+_66556973 AK316202 BX647507 AK304716 BC036116 BC043498 AK298945	-185331	+	NM_001242318	11677	-	TSC_hg19_v1_chr8_-_66754300 AK292680	12001	-	NM_033105 BC016742 AF368276 AL133660	191528	+	HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_001145838|MTFR1|9650|mitochondrial fission regulator 1##BX537854|MTFR1|9650|mitochondrial fission regulator 1##D13634|MTFR1|9650|mitochondrial fission regulator 1##NM_001145839|MTFR1|9650|mitochondrial fission regulator 1##NM_014637|MTFR1|9650|mitochondrial fission regulator 1##AK316202|MTFR1|9650|mitochondrial fission regulator 1##BX647507|MTFR1|9650|mitochondrial fission regulator 1##AK304716|MTFR1|9650|mitochondrial fission regulator 1##BC036116|MTFR1|9650|mitochondrial fission regulator 1##BC043498|MTFR1|9650|mitochondrial fission regulator 1##AK298945|MTFR1|9650|mitochondrial fission regulator 1##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK292680|PDE7A|5150|phosphodiesterase 7A##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	0.0	0.0	
chr10	109813913	109814046	reg1011703.p1	4.428	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-889603	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1354920	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3412934	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1869230	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1869298	-	NM_019903 AB209810 BC057285	1951802	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	0.974072	0.0	denovo_WM_7:-24:0.346	denovo_WM_7:-25:0.293	denovo_WM_7:-26:0.292
chr11	36432985	36433077	reg1013797.p1	4.428	+	NM_001160169	-10485	+	NM_001160168 NM_024841 BX640959 AK024275	-35471	+	NM_001160167 AK055042	-115251	+	TSC_hg19_v1_chr11_-_36531820 U78798 BC031052 AK292978 NM_004620 NM_145803	98783	-	NM_000448 M29474	156537	+	TSC_hg19_v1_chr11_+_36616072 AK290833 DQ121386 AK095997 AK299642 BC009561 BC051031 NM_138787 AK302634	183073	+	NM_001160169|PRR5L|79899|proline rich 5 like##NM_001160168|PRR5L|79899|proline rich 5 like##NM_024841|PRR5L|79899|proline rich 5 like##BX640959|PRR5L|79899|proline rich 5 like##AK024275|PRR5L|79899|proline rich 5 like##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like##U78798|TRAF6|7189|TNF receptor-associated factor 6##BC031052|TRAF6|7189|TNF receptor-associated factor 6##AK292978|TRAF6|7189|TNF receptor-associated factor 6##NM_004620|TRAF6|7189|TNF receptor-associated factor 6##NM_145803|TRAF6|7189|TNF receptor-associated factor 6##NM_000448|RAG1|5896|recombination activating gene 1##M29474|RAG1|5896|recombination activating gene 1##AK290833|C11orf74|119710|chromosome 11 open reading frame 74##DQ121386|C11orf74|119710|chromosome 11 open reading frame 74##AK095997|C11orf74|119710|chromosome 11 open reading frame 74##AK299642|C11orf74|119710|chromosome 11 open reading frame 74##BC009561|C11orf74|119710|chromosome 11 open reading frame 74##BC051031|C11orf74|119710|chromosome 11 open reading frame 74##NM_138787|C11orf74|119710|chromosome 11 open reading frame 74##AK302634|C11orf74|119710|chromosome 11 open reading frame 74	0.0	0.0	
chr1	214680409	214680509	reg1009600.p1	4.428	+	TSC_hg19_v1_chr1_+_214454550 BC068511 BC049367 BC094747 BC057793 NM_020197 AF226053 BC098133 BC098276 BC098305 BC098335 BC028104 AK313868 AB590916 BC039890	-226022	+	BC024201 NM_002763	-518600	+	AK298182 TSC_hg19_v1_chr1_+_214161296 U44060	-519170	+	X82676 TSC_hg19_v1_chr1_-_214724620 BC017300 AK090596	44148	-	TSC_hg19_v1_chr1_-_214724946 AK298120 BX538306 AK291641	44440	-	TSC_hg19_v1_chr1_-_214724977 NM_005401	44539	-	BC068511|SMYD2|56950|SET and MYND domain containing 2##BC049367|SMYD2|56950|SET and MYND domain containing 2##BC094747|SMYD2|56950|SET and MYND domain containing 2##BC057793|SMYD2|56950|SET and MYND domain containing 2##NM_020197|SMYD2|56950|SET and MYND domain containing 2##AF226053|SMYD2|56950|SET and MYND domain containing 2##BC098133|SMYD2|56950|SET and MYND domain containing 2##BC098276|SMYD2|56950|SET and MYND domain containing 2##BC098305|SMYD2|56950|SET and MYND domain containing 2##BC098335|SMYD2|56950|SET and MYND domain containing 2##BC028104|SMYD2|56950|SET and MYND domain containing 2##AK313868|SMYD2|56950|SET and MYND domain containing 2##BC039890|SMYD2|56950|SET and MYND domain containing 2##BC024201|PROX1|5629|prospero homeobox 1##NM_002763|PROX1|5629|prospero homeobox 1##AK298182|PROX1|5629|prospero homeobox 1##U44060|PROX1|5629|prospero homeobox 1##X82676|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##BC017300|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK090596|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK298120|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK291641|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14	0.947173	0.0	denovo_WM_7:0:0.930
chr14	64912266	64912428	reg1010976.p1	4.428	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	-57251	+	AK302747 NM_005956	-57594	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	-106989	-	AK315336 NM_004857 BC057229	19913	+	TSC_hg19_v1_chr14_-_64970524 NM_006977 BC035804	58096	-	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	58911	+	AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_006977|ZBTB25|7597|zinc finger and BTB domain containing 25##BC035804|ZBTB25|7597|zinc finger and BTB domain containing 25##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1	0.0	0.0	
chr16	19538609	19538755	reg1013789.p2	4.428	+	NM_001199022 NM_014711 TSC_hg19_v1_chr16_+_19535277 BC036654 AK300426 AB007879 CR749255 BC030223	-3451	+	AY463154 BC014981 TSC_hg19_v1_chr16_-_19533421 AF306698 BC025273 BC001538 AF212862 BC012153 AK312912 NM_016641	-5306	-	AY236494 NM_024780 BC038118 AK097718 BC027602 AK131202	-70878	+	AK294885 NM_020314	28054	+	TSC_hg19_v1_chr16_+_19567045 BX537867 AK095078 AK290286 AL832159 BC058845 AL833428 EU831926 EU832021	28354	+	TSC_hg19_v1_chr16_+_19727698 AF520569 AF520570 AK000122 NM_153208	189055	+	NM_001199022|CCP110|9738|centriolar coiled coil protein 110kDa##NM_014711|CCP110|9738|centriolar coiled coil protein 110kDa##BC036654|CCP110|9738|centriolar coiled coil protein 110kDa##AK300426|CCP110|9738|centriolar coiled coil protein 110kDa##AB007879|CCP110|9738|centriolar coiled coil protein 110kDa##CR749255|CCP110|9738|centriolar coiled coil protein 110kDa##BC030223|CCP110|9738|centriolar coiled coil protein 110kDa##AY463154|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC014981|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF306698|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC025273|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC001538|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AF212862|GDE1|51573|glycerophosphodiester phosphodiesterase 1##BC012153|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AK312912|GDE1|51573|glycerophosphodiester phosphodiesterase 1##NM_016641|GDE1|51573|glycerophosphodiester phosphodiesterase 1##AY236494|TMC5|79838|transmembrane channel-like 5##NM_024780|TMC5|79838|transmembrane channel-like 5##BC038118|TMC5|79838|transmembrane channel-like 5##AK097718|TMC5|79838|transmembrane channel-like 5##BC027602|TMC5|79838|transmembrane channel-like 5##AK131202|TMC5|79838|transmembrane channel-like 5##AK294885|C16orf62|57020|chromosome 16 open reading frame 62##NM_020314|C16orf62|57020|chromosome 16 open reading frame 62##BX537867|C16orf62|57020|chromosome 16 open reading frame 62##AK095078|C16orf62|57020|chromosome 16 open reading frame 62##AK290286|C16orf62|57020|chromosome 16 open reading frame 62##AL832159|C16orf62|57020|chromosome 16 open reading frame 62##BC058845|C16orf62|57020|chromosome 16 open reading frame 62##AL833428|C16orf62|57020|chromosome 16 open reading frame 62##EU831926|C16orf62|57020|chromosome 16 open reading frame 62##EU832021|C16orf62|57020|chromosome 16 open reading frame 62##AF520569|IQCK|124152|IQ motif containing K##AF520570|IQCK|124152|IQ motif containing K##AK000122|IQCK|124152|IQ motif containing K##NM_153208|IQCK|124152|IQ motif containing K	0.999703	0.0	denovo_WM_7:13:0.721
chr17	38712006	38712137	reg1009469.p1	4.428	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-54225	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-112252	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-137947	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	9647	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	91999	-	BC069196 TSC_hg19_v1_chr17_-_38804818	92725	-	AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.998692	0.0	
chr10	104403011	104403142	reg1009533.p2	4.427	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-139257	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-139357	+	CU674342 AM393135 DQ892689 DQ895934 AB462953 BC026016 TSC_hg19_v1_chr10_-_104262470 BC000693 Z14978 X82206 AK302072 AK312506 AK297362 AK297620 NM_005736	-140619	-	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	1208	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	71021	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	71269	+	AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##AM393135|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ892689|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ895934|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC026016|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC000693|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##Z14978|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##X82206|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK302072|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK312506|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297362|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297620|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_005736|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2	1.489071	0.0	denovo_WM_7:13:0.248	denovo_WM_7:34:0.449	denovo_WM_7:35:0.449	denovo_WM_7:-104:0.203
chr10	7526553	7526733	reg1006317.p1	4.427	+	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	-73209	-	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-75393	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-904163	+	AK027849 TSC_hg19_v1_chr10_-_7659249	132574	-	BC004282 NM_032817	134981	-	AK027831 AB075833 TSC_hg19_v1_chr10_-_7682819	156137	-	BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AK027831|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AB075833|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	0.0	0.0	
chr1	21444465	21444584	reg1000422.p2	4.427	+	AF012072 NM_003760	-6649	-	TSC_hg19_v1_chr1_-_21415672 AK302087	-28838	-	BC136643 BC144335 TSC_hg19_v1_chr1_-_21377462 AK225489	-67058	-	BC030578 NM_001198803	56715	-	TSC_hg19_v1_chr1_-_21503344 BC072413 AB209119	58800	-	TSC_hg19_v1_chr1_-_21503387 NM_001198801 NM_001198802	58846	-	AF012072|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_003760|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK302087|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC136643|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC144335|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AK225489|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC030578|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198803|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##BC072413|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##AB209119|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198801|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3##NM_001198802|EIF4G3|8672|eukaryotic translation initiation factor 4 gamma, 3	0.0	0.0	
chr18	63864255	63864423	reg1010570.p2	4.427	+	AB035301 NM_004361 TSC_hg19_v1_chr18_+_63418247	-446137	+	TSC_hg19_v1_chr18_+_63417845 BC036786	-446473	+	AJ007611 NM_033646	-446852	+	AJ007607 NM_021153 AK304000 AK315257 BC015877	406972	-	AK021849 TSC_hg19_v1_chr18_-_65182656	1318244	-	TSC_hg19_v1_chr18_-_65183956 NM_032160	1319607	-	AB035301|CDH7|1005|cadherin 7, type 2##NM_004361|CDH7|1005|cadherin 7, type 2##BC036786|CDH7|1005|cadherin 7, type 2##AJ007611|CDH7|1005|cadherin 7, type 2##NM_033646|CDH7|1005|cadherin 7, type 2##AJ007607|CDH19|28513|cadherin 19, type 2##NM_021153|CDH19|28513|cadherin 19, type 2##AK304000|CDH19|28513|cadherin 19, type 2##AK315257|CDH19|28513|cadherin 19, type 2##BC015877|CDH19|28513|cadherin 19, type 2##AK021849|DSEL|92126|dermatan sulfate epimerase-like##NM_032160|DSEL|92126|dermatan sulfate epimerase-like	0.035282	0.0	
chr2	216002546	216002678	reg1014926.p1	4.427	+	AY033486 NM_015657	-105803	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	-328253	-	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	-726152	+	BC144073 AY219711 NM_173076	497	-	NM_004044 TSC_hg19_v1_chr2_+_216176781 AK313066 D82348 AK298142	174126	+	D89976 TSC_hg19_v1_chr2_+_216176813	174200	+	AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_004044|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK313066|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D82348|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK298142|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D89976|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	0.979776	0.0	denovo_WM_7:1:0.980
chr2	78900265	78900373	reg1015036.p1	4.427	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	-1150901	-	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-2962268	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-2962600	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	352519	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	414814	-	AK307292 NM_002909 TSC_hg19_v1_chr2_+_79347583	447217	+	BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta##AK307292|REG1A|5967|regenerating islet-derived 1 alpha##NM_002909|REG1A|5967|regenerating islet-derived 1 alpha	0.9258	0.686429	CTCF.p2:-10:0.580	denovo_WM_7:-54:0.569	denovo_WM_7:-55:0.228
chr2	8628478	8628593	reg1013139.p1	4.427	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1570948	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1610672	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1621832	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	193668	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	349184	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	515286	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr5	137860158	137860292	reg1011952.p2	4.427	+	TSC_hg19_v1_chr5_-_137854498 BT007374 DQ890706 DQ893890	-5701	-	TSC_hg19_v1_chr5_-_137848536 X80916	-11672	-	TSC_hg19_v1_chr5_+_137801192 NM_001964 X52541 BC073983 M62829 M80583 BC041701 CU687282 AB591041 EU832310 EU832395	-58911	+	TSC_hg19_v1_chr5_-_137878826 M75715	18592	-	TSC_hg19_v1_chr5_-_137878868 BC088358	18647	-	TSC_hg19_v1_chr5_-_137878899 AK312510	18670	-	BT007374|ETF1|2107|eukaryotic translation termination factor 1##DQ890706|ETF1|2107|eukaryotic translation termination factor 1##DQ893890|ETF1|2107|eukaryotic translation termination factor 1##X80916|ETF1|2107|eukaryotic translation termination factor 1##NM_001964|EGR1|1958|early growth response 1##X52541|EGR1|1958|early growth response 1##BC073983|EGR1|1958|early growth response 1##M62829|EGR1|1958|early growth response 1##M80583|EGR1|1958|early growth response 1##BC041701|EGR1|1958|early growth response 1##EU832310|EGR1|1958|early growth response 1##EU832395|EGR1|1958|early growth response 1##M75715|ETF1|2107|eukaryotic translation termination factor 1##BC088358|ETF1|2107|eukaryotic translation termination factor 1##AK312510|ETF1|2107|eukaryotic translation termination factor 1	1.992686	0.0	denovo_WM_7:25:0.881	denovo_WM_7:51:0.693
chr7	102031284	102031434	reg1002446.p4	4.427	+	TSC_hg19_v1_chr7_+_102023018 AK098134	-8326	+	TSC_hg19_v1_chr7_+_102004338 BC048257 BC066362	-27007	+	TSC_hg19_v1_chr7_+_102004329 NM_001242713 BC063572 AK098276	-27048	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	5483	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	42618	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	42682	+	NM_001242713|LOC100289561|100289561|uncharacterized LOC100289561##BC063572|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##AK098276|LOC100630923|100630923|LOC100289561-PRKRIP1 readthrough##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2	0.0	0.999568	CTCF.p2:9:1.000
chrX	132409882	132409990	reg1013739.p2	4.427	+	EU446842 BC074762 BC117336 BC126361 AB464736 AF219119 NM_016521	-57696	-	BC101189 BC101190 BC101191 BC101192 BC069073 AF285593 NM_031907	-247638	-	AK056706 NM_001077188 NM_147175	-314514	-	AB528412 CU677845 DQ891809 DQ894992 AF064826 AY052833 AF030186 NM_001448 TSC_hg19_v1_chrX_-_132549316	139238	-	TSC_hg19_v1_chrX_-_132549514 AK312605 AY358507 BC017166	139532	-	AB527294 CU690242 DQ349136 DQ349137 DQ349138 DQ893658 DQ895822 TSC_hg19_v1_chrX_-_133119622 Z37987 L47176 AK222761 AK222766 AK310689 BC035972 U50410	709613	-	EU446842|TFDP3|51270|transcription factor Dp family, member 3##BC074762|TFDP3|51270|transcription factor Dp family, member 3##BC117336|TFDP3|51270|transcription factor Dp family, member 3##BC126361|TFDP3|51270|transcription factor Dp family, member 3##AF219119|TFDP3|51270|transcription factor Dp family, member 3##NM_016521|TFDP3|51270|transcription factor Dp family, member 3##BC101189|USP26|83844|ubiquitin specific peptidase 26##BC101190|USP26|83844|ubiquitin specific peptidase 26##BC101191|USP26|83844|ubiquitin specific peptidase 26##BC101192|USP26|83844|ubiquitin specific peptidase 26##BC069073|USP26|83844|ubiquitin specific peptidase 26##AF285593|USP26|83844|ubiquitin specific peptidase 26##NM_031907|USP26|83844|ubiquitin specific peptidase 26##AK056706|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##NM_001077188|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##NM_147175|HS6ST2|90161|heparan sulfate 6-O-sulfotransferase 2##DQ891809|GPC4|2239|glypican 4##DQ894992|GPC4|2239|glypican 4##AF064826|GPC4|2239|glypican 4##AY052833|GPC4|2239|glypican 4##AF030186|GPC4|2239|glypican 4##NM_001448|GPC4|2239|glypican 4##AK312605|GPC4|2239|glypican 4##AY358507|GPC4|2239|glypican 4##BC017166|GPC4|2239|glypican 4##DQ349136|GPC3|2719|glypican 3##DQ349137|GPC3|2719|glypican 3##DQ349138|GPC3|2719|glypican 3##DQ893658|GPC3|2719|glypican 3##DQ895822|GPC3|2719|glypican 3##Z37987|GPC3|2719|glypican 3##L47176|GPC3|2719|glypican 3##AK222761|GPC3|2719|glypican 3##AK222766|GPC3|2719|glypican 3##AK310689|GPC3|2719|glypican 3##BC035972|GPC3|2719|glypican 3##U50410|GPC3|2719|glypican 3	1.008747	0.0	denovo_WM_7:-10:0.967
chr10	64576733	64576913	reg1001497.p2	4.426	+	TSC_hg19_v1_chr10_-_64576127 NM_000399 NM_001136177 NM_001136179	-676	-	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	-726	-	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	-12166	+	AK312813 NM_001136178	2103	-	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	316208	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	316323	+	NM_000399|EGR2|1959|early growth response 2##NM_001136177|EGR2|1959|early growth response 2##NM_001136179|EGR2|1959|early growth response 2##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2	0.0	0.0	
chr12	133390216	133390332	reg1008061.p1	4.426	+	BC048203 TSC_hg19_v1_chr12_-_133372555	-17717	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-51854	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-83716	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	14705	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	15024	-	TSC_hg19_v1_chr12_-_133405429 BC142658 BC146675 NM_001172557 BC060826	15188	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3##BC142658|GOLGA3|2802|golgin A3##BC146675|GOLGA3|2802|golgin A3##NM_001172557|GOLGA3|2802|golgin A3##BC060826|GOLGA3|2802|golgin A3	0.998675	0.0	
chr2	186896377	186896557	reg1002145.p2	4.426	+	NM_173651	-293113	+	BC136602 TSC_hg19_v1_chr2_+_185463544	-1432975	+	BC142612 TSC_hg19_v1_chr2_+_185463319	-1433162	+	TSC_hg19_v1_chr2_+_187350986 AF220184 NM_018471 AK298615 AK001901 AK297658 AF289586	454463	+	TSC_hg19_v1_chr2_+_187351010 BC012336 AF161421 AF109366	454543	+	TSC_hg19_v1_chr2_+_187351051 BC021102 EU176353 AB587394 CU676824	454603	+	NM_173651|FSIP2|401024|fibrous sheath interacting protein 2##BC136602|ZNF804A|91752|zinc finger protein 804A##BC142612|ZNF804A|91752|zinc finger protein 804A##AF220184|ZC3H15|55854|zinc finger CCCH-type containing 15##NM_018471|ZC3H15|55854|zinc finger CCCH-type containing 15##AK298615|ZC3H15|55854|zinc finger CCCH-type containing 15##AK001901|ZC3H15|55854|zinc finger CCCH-type containing 15##AK297658|ZC3H15|55854|zinc finger CCCH-type containing 15##AF289586|ZC3H15|55854|zinc finger CCCH-type containing 15##BC012336|ZC3H15|55854|zinc finger CCCH-type containing 15##AF161421|ZC3H15|55854|zinc finger CCCH-type containing 15##AF109366|ZC3H15|55854|zinc finger CCCH-type containing 15##BC021102|ZC3H15|55854|zinc finger CCCH-type containing 15##EU176353|ZC3H15|55854|zinc finger CCCH-type containing 15	0.0	0.0	
chr2	20422966	20423085	reg1011378.p1	4.426	+	NM_014713	-171237	-	TSC_hg19_v1_chr2_-_20251415 AY359028 D14696 BC003158 AK129875	-171598	-	CR456758 TSC_hg19_v1_chr2_-_20251382 BC000421 AK304433 BC093075	-171687	-	X60306 AB464260 CU679093 DQ893265 DQ896595 TSC_hg19_v1_chr2_-_20424892 AK299385 J05392 AK313974 AK222739 BC008765 AJ551176 AK311409 NM_002997	1762	-	TSC_hg19_v1_chr2_-_20425168 NM_001006946	2154	-	AF272350 TSC_hg19_v1_chr2_-_20512079	89024	-	NM_014713|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AY359028|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##D14696|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC003158|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK129875|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##CR456758|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC000421|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##AK304433|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##BC093075|LAPTM4A|9741|lysosomal protein transmembrane 4 alpha##X60306|SDC1|6382|syndecan 1##DQ893265|SDC1|6382|syndecan 1##DQ896595|SDC1|6382|syndecan 1##AK299385|SDC1|6382|syndecan 1##J05392|SDC1|6382|syndecan 1##AK313974|SDC1|6382|syndecan 1##AK222739|SDC1|6382|syndecan 1##BC008765|SDC1|6382|syndecan 1##AJ551176|SDC1|6382|syndecan 1##NM_002997|SDC1|6382|syndecan 1##NM_001006946|SDC1|6382|syndecan 1##AF272350|PUM2|23369|pumilio homolog 2 (Drosophila)	0.981044	0.0	denovo_WM_7:25:0.981
chr4	78114914	78115037	reg1014737.p2	4.426	+	TSC_hg19_v1_chr4_+_78079302 L49506 AK293899 AB529093 BT019503 CR542181 CR542200 CU689406 DQ890836 DQ893991	-35482	+	TSC_hg19_v1_chr4_+_78078398 U47414	-36515	+	TSC_hg19_v1_chr4_+_78078359 NM_004354 AK292029 BC032518	-36614	+	AF044197 NM_006419	317930	+	TSC_hg19_v1_chr4_-_78740523 AK304397 AK058188 AK303417 NM_144571	625569	-	NM_020236 AF212225 TSC_hg19_v1_chr4_+_78783990 BC014356 BC017765 AK315600 BC015109 BC032595	668939	+	L49506|CCNG2|901|cyclin G2##AK293899|CCNG2|901|cyclin G2##BT019503|CCNG2|901|cyclin G2##CR542181|CCNG2|901|cyclin G2##CR542200|CCNG2|901|cyclin G2##DQ890836|CCNG2|901|cyclin G2##DQ893991|CCNG2|901|cyclin G2##U47414|CCNG2|901|cyclin G2##NM_004354|CCNG2|901|cyclin G2##AK292029|CCNG2|901|cyclin G2##BC032518|CCNG2|901|cyclin G2##AF044197|CXCL13|10563|chemokine (C-X-C motif) ligand 13##NM_006419|CXCL13|10563|chemokine (C-X-C motif) ligand 13##AK304397|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK058188|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK303417|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_144571|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_020236|MRPL1|65008|mitochondrial ribosomal protein L1##AF212225|MRPL1|65008|mitochondrial ribosomal protein L1##BC014356|MRPL1|65008|mitochondrial ribosomal protein L1##BC017765|MRPL1|65008|mitochondrial ribosomal protein L1##AK315600|MRPL1|65008|mitochondrial ribosomal protein L1##BC015109|MRPL1|65008|mitochondrial ribosomal protein L1##BC032595|MRPL1|65008|mitochondrial ribosomal protein L1	0.0	0.0	
chr7	22925657	22925783	reg1006704.p2	4.426	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-63277	-	TSC_hg19_v1_chr7_+_22767104 X04403	-158602	+	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	-158897	+	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	127975	-	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	128030	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	219652	+	CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)	0.0	0.0	
chr12	102232328	102232402	reg1001422.p1	4.425	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-7779	-	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	-99146	-	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	-140743	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	38753	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	39093	+	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	223385	-	AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##CR457171|CCDC53|51019|coiled-coil domain containing 53	0.045772	0.0	
chr17	72206729	72206853	reg1008329.p1	4.425	+	TSC_hg19_v1_chr17_+_72199849 BC000603	-6938	+	NM_000999 NM_001035258 AK097905 TSC_hg19_v1_chr17_+_72199816 AB055771 AK312119	-6976	+	NM_001144952	-566565	-	TSC_hg19_v1_chr17_+_72209709 NM_032646 BC107492 BC107602 AK315163 AF319952 BC005168	2878	+	BX647912 NM_052869	37713	+	BC039582 NM_001172810 NM_023036 BC033013 AF250288	63615	+	BC000603|RPL38|6169|ribosomal protein L38##NM_000999|RPL38|6169|ribosomal protein L38##NM_001035258|RPL38|6169|ribosomal protein L38##AB055771|RPL38|6169|ribosomal protein L38##AK312119|RPL38|6169|ribosomal protein L38##NM_001144952|SDK2|54549|sidekick cell adhesion molecule 2##NM_032646|TTYH2|94015|tweety homolog 2 (Drosophila)##BC107492|TTYH2|94015|tweety homolog 2 (Drosophila)##BC107602|TTYH2|94015|tweety homolog 2 (Drosophila)##AK315163|TTYH2|94015|tweety homolog 2 (Drosophila)##AF319952|TTYH2|94015|tweety homolog 2 (Drosophila)##BC005168|TTYH2|94015|tweety homolog 2 (Drosophila)##BX647912|TTYH2|94015|tweety homolog 2 (Drosophila)##NM_052869|TTYH2|94015|tweety homolog 2 (Drosophila)##BC039582|DNAI2|64446|dynein, axonemal, intermediate chain 2##NM_001172810|DNAI2|64446|dynein, axonemal, intermediate chain 2##NM_023036|DNAI2|64446|dynein, axonemal, intermediate chain 2##BC033013|DNAI2|64446|dynein, axonemal, intermediate chain 2##AF250288|DNAI2|64446|dynein, axonemal, intermediate chain 2	0.963692	0.994895	denovo_WM_7:18:0.821	CTCF.p2:-67:0.995
chr17	74776420	74776578	reg1008264.p2	4.425	+	TSC_hg19_v1_chr17_+_74734111 AK308058 AF015184 AK000233	-42346	+	AF015183 NM_001242532 NM_001242533 NM_001242535 NM_001242536 NM_001242537 NM_024311	-42974	+	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	-43043	-	TSC_hg19_v1_chr17_+_74864556 AK057861 AB235153 BC041577 NM_001199172 NM_144677 BC062354	88167	+	AB114297 NM_198955 BC144361	92261	+	NM_001204408 BX648413 TSC_hg19_v1_chr17_+_75084834 FM995495 FM995497 FM995498 FN357117 FN357118 FN357119 FN357120 FN357121 FN357125 FN357122 FN357123 FN357126	308298	+	AK308058|MFSD11|79157|major facilitator superfamily domain containing 11##AF015184|MFSD11|79157|major facilitator superfamily domain containing 11##AK000233|MFSD11|79157|major facilitator superfamily domain containing 11##AF015183|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242532|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242533|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242535|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242536|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242537|MFSD11|79157|major facilitator superfamily domain containing 11##NM_024311|MFSD11|79157|major facilitator superfamily domain containing 11##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2##AB235153|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC041577|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001199172|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_144677|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC062354|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##AB114297|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_198955|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC144361|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001204408|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BX648413|LINC00338|654434|long intergenic non-protein coding RNA 338##FM995495|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FM995497|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FM995498|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FN357117|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357118|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357121|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357125|LINC00338|654434|long intergenic non-protein coding RNA 338	0.99414	0.0	denovo_WM_7:-83:0.846
chr17	76155637	76155767	reg1011305.p1	4.425	+	AY358510 NM_001163075	-13269	+	BC023597 NM_007267 TSC_hg19_v1_chr17_-_76128499	-27202	-	TSC_hg19_v1_chr17_+_76126871 AK310623 NM_152468 AK303499 BC110296 AY099358 AY099359 BC028076 AK090478	-28836	+	TSC_hg19_v1_chr17_+_76164661 AJ002308 AY358916 NM_004710 BC000407 BC105992 BC029755 DQ891832 DQ895019	8958	+	AB451268 AB451395 BT006941 AB591021 BC007872 BC007986 BC006484 AK314950 K02581 TSC_hg19_v1_chr17_-_76183133 NM_003258	27477	-	BC132824 NM_001010982 NM_001145526 TSC_hg19_v1_chr17_+_76183442 BC020920 BC142973 BX647783 BX648442 EU832465 EU832546 HQ258157	27721	+	AY358510|C17orf99|100141515|chromosome 17 open reading frame 99##NM_001163075|C17orf99|100141515|chromosome 17 open reading frame 99##BC023597|TMC6|11322|transmembrane channel-like 6##NM_007267|TMC6|11322|transmembrane channel-like 6##AK310623|TMC8|147138|transmembrane channel-like 8##NM_152468|TMC8|147138|transmembrane channel-like 8##AK303499|TMC8|147138|transmembrane channel-like 8##BC110296|TMC8|147138|transmembrane channel-like 8##AY099358|TMC8|147138|transmembrane channel-like 8##AY099359|TMC8|147138|transmembrane channel-like 8##BC028076|TMC8|147138|transmembrane channel-like 8##AK090478|TMC8|147138|transmembrane channel-like 8##AJ002308|SYNGR2|9144|synaptogyrin 2##AY358916|SYNGR2|9144|synaptogyrin 2##NM_004710|SYNGR2|9144|synaptogyrin 2##BC000407|SYNGR2|9144|synaptogyrin 2##BC105992|SYNGR2|9144|synaptogyrin 2##BC029755|SYNGR2|9144|synaptogyrin 2##DQ891832|SYNGR2|9144|synaptogyrin 2##DQ895019|SYNGR2|9144|synaptogyrin 2##AB451268|TK1|7083|thymidine kinase 1, soluble##AB451395|TK1|7083|thymidine kinase 1, soluble##BT006941|TK1|7083|thymidine kinase 1, soluble##BC007872|TK1|7083|thymidine kinase 1, soluble##BC007986|TK1|7083|thymidine kinase 1, soluble##BC006484|TK1|7083|thymidine kinase 1, soluble##AK314950|TK1|7083|thymidine kinase 1, soluble##K02581|TK1|7083|thymidine kinase 1, soluble##NM_003258|TK1|7083|thymidine kinase 1, soluble##BC132824|AFMID|125061|arylformamidase##NM_001010982|AFMID|125061|arylformamidase##NM_001145526|AFMID|125061|arylformamidase##BC020920|AFMID|125061|arylformamidase##BC142973|AFMID|125061|arylformamidase##BX648442|AFMID|125061|arylformamidase##EU832465|AFMID|125061|arylformamidase##EU832546|AFMID|125061|arylformamidase##HQ258157|AFMID|125061|arylformamidase	0.993909	0.0	denovo_WM_7:-21:0.981
chr20	49427537	49427717	reg1009069.p2	4.425	+	AF361220 NM_001010974 NM_017843 NM_198799 TSC_hg19_v1_chr20_+_49411542 AK000502 BC038381 BC047337 AJ511266 BC056883	-16109	+	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	-79558	+	TSC_hg19_v1_chr20_-_49308074 AK124347	-119550	-	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	120096	-	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	147436	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	147741	+	AF361220|BCAS4|55653|breast carcinoma amplified sequence 4##NM_001010974|BCAS4|55653|breast carcinoma amplified sequence 4##NM_017843|BCAS4|55653|breast carcinoma amplified sequence 4##NM_198799|BCAS4|55653|breast carcinoma amplified sequence 4##AK000502|BCAS4|55653|breast carcinoma amplified sequence 4##BC038381|BCAS4|55653|breast carcinoma amplified sequence 4##BC047337|BCAS4|55653|breast carcinoma amplified sequence 4##AJ511266|BCAS4|55653|breast carcinoma amplified sequence 4##BC056883|BCAS4|55653|breast carcinoma amplified sequence 4##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3	0.0	0.0	
chr8	61798413	61798547	reg1012115.p1	4.425	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-207078	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-207192	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-368730	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	402070	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	803866	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	828538	-	BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase	1.950573	0.0	denovo_WM_7:0:0.242	denovo_WM_7:-2:0.410	denovo_WM_7:23:0.455	denovo_WM_7:24:0.456
chr11	34355528	34355625	reg1011939.p1	4.424	+	TSC_hg19_v1_chr11_+_34127208 AK294044 AL136882 AK001636 BC014440 BC020205	-228326	+	NM_001144030 NM_024662 TSC_hg19_v1_chr11_+_34127175 AK022241 AK225341 BC035558 AB051496	-228419	+	TSC_hg19_v1_chr11_+_34073956 EU176359 EU176467 EU176701	-281539	+	TSC_hg19_v1_chr11_-_34379556 AK291744 NM_145804	23979	-	TSC_hg19_v1_chr11_+_34460487 AK291585 NM_001752 BC110398 AK315350 X04076 BC112217 BC112219	104898	+	TSC_hg19_v1_chr11_+_34460533 AB587573 AY028632 HQ258304	104973	+	AK294044|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AL136882|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK001636|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC014440|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC020205|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_001144030|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##NM_024662|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK022241|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AK225341|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##BC035558|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##AB051496|NAT10|55226|N-acetyltransferase 10 (GCN5-related)##EU176359|CAPRIN1|4076|cell cycle associated protein 1##EU176467|CAPRIN1|4076|cell cycle associated protein 1##EU176701|CAPRIN1|4076|cell cycle associated protein 1##AK291744|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##NM_145804|ABTB2|25841|ankyrin repeat and BTB (POZ) domain containing 2##AK291585|CAT|847|catalase##NM_001752|CAT|847|catalase##BC110398|CAT|847|catalase##AK315350|CAT|847|catalase##X04076|CAT|847|catalase##BC112217|CAT|847|catalase##BC112219|CAT|847|catalase##AY028632|CAT|847|catalase##HQ258304|CAT|847|catalase	0.99842	0.0	denovo_WM_7:-3:0.442	denovo_WM_7:-4:0.442
chr14	21132135	21132286	reg1007870.p1	4.424	+	NM_001001968	-22361	-	HQ258082 AY665807 BC130347 BC130349 NM_001024822	-73280	-	BX161458 NM_145250	-73808	-	FJ236304 NM_001145 AK092422 NM_002937	20143	+	TSC_hg19_v1_chr14_+_21152776 AK313989 BC015520 BC054880 BX248010	20566	+	TSC_hg19_v1_chr14_+_21156940 NM_001097577 NM_194431 BC062698 BC020704	24722	+	NM_001001968|OR6S1|341799|olfactory receptor, family 6, subfamily S, member 1##HQ258082|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##AY665807|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BC130347|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BC130349|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##NM_001024822|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BX161458|RNASE11|122651|ribonuclease, RNase A family, 11 (non-active)##NM_145250|RNASE11|122651|ribonuclease, RNase A family, 11 (non-active)##FJ236304|ANG|283|angiogenin, ribonuclease, RNase A family, 5##NM_001145|ANG|283|angiogenin, ribonuclease, RNase A family, 5##AK092422|RNASE4|6038|ribonuclease, RNase A family, 4##NM_002937|RNASE4|6038|ribonuclease, RNase A family, 4##AK313989|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC015520|RNASE4|6038|ribonuclease, RNase A family, 4##BC054880|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BX248010|RNASE4|6038|ribonuclease, RNase A family, 4##NM_001097577|ANG|283|angiogenin, ribonuclease, RNase A family, 5##NM_194431|RNASE4|6038|ribonuclease, RNase A family, 4##BC062698|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC020704|ANG|283|angiogenin, ribonuclease, RNase A family, 5	0.926664	0.0	denovo_WM_7:-41:0.882
chr21	32593395	32593461	reg1011676.p2	4.424	+	AB096964 NM_001099219	-182634	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-339570	-	AJ457063 AB096962 NM_181606	-391440	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	337930	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	438579	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	480690	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.906872	0.0	
chr3	183158510	183158604	reg1012488.p2	4.424	+	NM_015078 BC064632 AK124500 AK310962	-12618	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-186951	+	AB209517 TSC_hg19_v1_chr3_+_182971343	-187279	+	TSC_hg19_v1_chr3_+_183165436 AK057000	6873	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	114895	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	194843	+	NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AB209517|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK057000|LOC100505687|100505687|uncharacterized LOC100505687##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)	0.999365	0.0	denovo_WM_7:27:0.841
chr5	131894389	131894490	reg1008863.p1	4.424	+	TSC_hg19_v1_chr5_+_131892670 NM_005732 BC140005 U63139 AK290597 BC108282 AF057299 AF057300 BC062603 BC073850 BC136436	-1799	+	AB591005 BC066279 BC066280 BC066281 BC066282 BC069137 NM_000879 X04688 X12705	-15247	-	X14454 BC009483 AK298770 AK314025 NM_002198 TSC_hg19_v1_chr5_-_131826466	-67958	-	BC096138 BC096139 BC096140 BC096141 NM_002188 X69079 AB463799 L06801 AF043334	99451	+	NM_000589 NM_172348	114933	+	TSC_hg19_v1_chr5_-_132073239 AB209780 BC039592 AK295089 BC020890 AK313359 BC032599 BC045542 NM_007054	178778	-	NM_005732|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC140005|RAD50|10111|RAD50 homolog (S. cerevisiae)##U63139|RAD50|10111|RAD50 homolog (S. cerevisiae)##AK290597|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC108282|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057299|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057300|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC062603|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC073850|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC136436|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC066279|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066280|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066281|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066282|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC069137|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_000879|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X04688|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X12705|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X14454|IRF1|3659|interferon regulatory factor 1##BC009483|IRF1|3659|interferon regulatory factor 1##AK298770|IRF1|3659|interferon regulatory factor 1##AK314025|IRF1|3659|interferon regulatory factor 1##NM_002198|IRF1|3659|interferon regulatory factor 1##BC096138|IL13|3596|interleukin 13##BC096139|IL13|3596|interleukin 13##BC096140|IL13|3596|interleukin 13##BC096141|IL13|3596|interleukin 13##NM_002188|IL13|3596|interleukin 13##X69079|IL13|3596|interleukin 13##L06801|IL13|3596|interleukin 13##AF043334|IL13|3596|interleukin 13##NM_000589|IL4|3565|interleukin 4##NM_172348|IL4|3565|interleukin 4##AB209780|KIF3A|11127|kinesin family member 3A##BC039592|KIF3A|11127|kinesin family member 3A##AK295089|KIF3A|11127|kinesin family member 3A##BC020890|KIF3A|11127|kinesin family member 3A##AK313359|KIF3A|11127|kinesin family member 3A##BC032599|KIF3A|11127|kinesin family member 3A##BC045542|KIF3A|11127|kinesin family member 3A##NM_007054|KIF3A|11127|kinesin family member 3A	0.999471	0.0	
chr10	18695985	18696107	reg1010584.p2	4.423	+	NM_201570 AK299873 AK295113	-6483	+	AK310943 NM_201590	-66433	+	NM_000724 AB208917 U95019	-146406	+	AK074323 BC035778 NM_182543	244486	-	BC033534 TSC_hg19_v1_chr10_-_18948215	252151	-	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	252375	+	NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B	1.98601	0.0	denovo_WM_7:0:0.539	denovo_WM_7:1:0.270	denovo_WM_7:15:0.329	denovo_WM_7:16:0.599
chr1	174937893	174938073	reg1009400.p1	4.423	+	AK316355 NM_001243764 AK316219 AK298711	-4062	+	NM_001035230 BC012094	-93314	+	NM_001243763 AL049701	-94424	+	NM_001007214 AK093425 AX748118	30600	+	TSC_hg19_v1_chr1_+_174968845 NM_014412	30884	+	TSC_hg19_v1_chr1_+_174969090 BC005975	31098	+	AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001007214|CACYBP|27101|calcyclin binding protein##AK093425|CACYBP|27101|calcyclin binding protein##NM_014412|CACYBP|27101|calcyclin binding protein##BC005975|CACYBP|27101|calcyclin binding protein	0.0	0.0	
chr2	201347264	201347423	reg1011287.p1	4.423	+	TSC_hg19_v1_chr2_+_201171424 AF193059 BC065817	-175894	+	AL110124 AY450394 AK090867 TSC_hg19_v1_chr2_+_201171276 NM_001100422 NM_001100424 AK002064 AK090703 AK314561 BC010848 BC018736 NM_001100423	-176244	+	NM_015535 AK290496	-176734	+	TSC_hg19_v1_chr2_-_201374792 BC059366 BC045189 AK290867 BC067755 AK055884 NM_152387	27489	-	TSC_hg19_v1_chr2_+_201390929 NM_001160033 NM_001160046 NM_152524 AK095291 BC048349 BC110583 BX647433 AK302457 BC092412 AY094614	43559	+	TSC_hg19_v1_chr2_+_201450590 AK301052	103244	+	AF193059|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##BC065817|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AL110124|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AY450394|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AK090867|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##NM_001100422|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##NM_001100424|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AK002064|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AK090703|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AK314561|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##BC010848|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##BC018736|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##NM_001100423|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##NM_015535|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##AK290496|SPATS2L|26010|spermatogenesis associated, serine-rich 2-like##BC059366|KCTD18|130535|potassium channel tetramerisation domain containing 18##BC045189|KCTD18|130535|potassium channel tetramerisation domain containing 18##AK290867|KCTD18|130535|potassium channel tetramerisation domain containing 18##BC067755|KCTD18|130535|potassium channel tetramerisation domain containing 18##AK055884|KCTD18|130535|potassium channel tetramerisation domain containing 18##NM_152387|KCTD18|130535|potassium channel tetramerisation domain containing 18##NM_001160033|SGOL2|151246|shugoshin-like 2 (S. pombe)##NM_001160046|SGOL2|151246|shugoshin-like 2 (S. pombe)##NM_152524|SGOL2|151246|shugoshin-like 2 (S. pombe)##AK095291|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC048349|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC110583|SGOL2|151246|shugoshin-like 2 (S. pombe)##BX647433|SGOL2|151246|shugoshin-like 2 (S. pombe)##AK302457|SGOL2|151246|shugoshin-like 2 (S. pombe)##BC092412|SGOL2|151246|shugoshin-like 2 (S. pombe)##AY094614|SGOL2|151246|shugoshin-like 2 (S. pombe)##AK301052|AOX1|316|aldehyde oxidase 1	0.997513	0.0	
chr2	42802673	42802789	reg1013412.p1	4.423	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-6834	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-7010	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-81029	+	AY158687 AB528920 AB083055 BC063549 NM_148962	188569	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	217020	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	650614	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.474729	0.0	denovo_WM_7:-24:0.312
chr6	151797190	151797292	reg1013543.p1	4.423	+	AK298490 TSC_hg19_v1_chr6_+_151773653 AK310840 AL110241 BC011348 CU679902	-23599	+	AK022972 NM_024573	-23820	+	TSC_hg19_v1_chr6_-_151773262 BC119683 AK000634 BC106065 AK292339 NM_017909	-23983	-	NM_025059 BC060803 BC035003 AK225330 AK026958	17977	+	NM_001122742 U68068 AK309580 AB588629 AB588630	214452	+	NM_001122741 AK293019 AK313644	329582	+	AK298490|C6orf211|79624|chromosome 6 open reading frame 211##AK310840|C6orf211|79624|chromosome 6 open reading frame 211##AL110241|C6orf211|79624|chromosome 6 open reading frame 211##BC011348|C6orf211|79624|chromosome 6 open reading frame 211##AK022972|C6orf211|79624|chromosome 6 open reading frame 211##NM_024573|C6orf211|79624|chromosome 6 open reading frame 211##BC119683|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##AK000634|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##BC106065|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##AK292339|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##NM_017909|RMND1|55005|required for meiotic nuclear division 1 homolog (S. cerevisiae)##NM_025059|C6orf97|80129|chromosome 6 open reading frame 97##BC060803|C6orf97|80129|chromosome 6 open reading frame 97##BC035003|C6orf97|80129|chromosome 6 open reading frame 97##AK225330|C6orf97|80129|chromosome 6 open reading frame 97##AK026958|C6orf97|80129|chromosome 6 open reading frame 97##NM_001122742|ESR1|2099|estrogen receptor 1##U68068|ESR1|2099|estrogen receptor 1##AK309580|ESR1|2099|estrogen receptor 1##AB588629|ESR1|2099|estrogen receptor 1##AB588630|ESR1|2099|estrogen receptor 1##NM_001122741|ESR1|2099|estrogen receptor 1##AK293019|ESR1|2099|estrogen receptor 1##AK313644|ESR1|2099|estrogen receptor 1	0.0	0.995178	CTCF.p2:-4:0.995
chr2	37382048	37382207	reg1013401.p1	4.422	+	AY302136 NM_001135652 BC143228	-7170	-	NM_174931 TSC_hg19_v1_chr2_+_37311662 AK095667 BC071798 AK289504 AK294697	-70480	+	TSC_hg19_v1_chr2_-_37311470 BC150605 NM_019024 AK093937 AX748373	-70635	-	TSC_hg19_v1_chr2_-_37384096 BC022314 BC057805 AK290655	1944	-	TSC_hg19_v1_chr2_-_37384151 BC040851 NM_001135651 NM_002759	2135	-	BC140797 BC144573 BC144574 NM_001032377	33562	-	AY302136|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135652|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC143228|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_174931|CCDC75|253635|coiled-coil domain containing 75##AK095667|CCDC75|253635|coiled-coil domain containing 75##BC071798|CCDC75|253635|coiled-coil domain containing 75##AK289504|CCDC75|253635|coiled-coil domain containing 75##AK294697|CCDC75|253635|coiled-coil domain containing 75##BC150605|HEATR5B|54497|HEAT repeat containing 5B##NM_019024|HEATR5B|54497|HEAT repeat containing 5B##BC022314|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC057805|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##AK290655|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC040851|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_001135651|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##NM_002759|EIF2AK2|5610|eukaryotic translation initiation factor 2-alpha kinase 2##BC140797|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##BC144573|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##BC144574|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1##NM_001032377|SULT6B1|391365|sulfotransferase family, cytosolic, 6B, member 1	0.990668	0.0	denovo_WM_7:-40:0.527	denovo_WM_7:-41:0.305
chr6	45677501	45677681	reg1012034.p1	4.422	+	TSC_hg19_v1_chr6_+_45390379 L40992	-287179	+	TSC_hg19_v1_chr6_+_45390325 BC108919 BC108920	-287286	+	TSC_hg19_v1_chr6_+_45389825 NM_004348	-287726	+	DQ892643 DQ895881 CU690236 AF176920 AK314416 AK075163 TSC_hg19_v1_chr6_-_45983598 AK075144 AF216941 AK222544 BC035968 DQ679794 AK223130 NM_016929	305886	-	AY032602 AK097048 NM_001114086	370440	-	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	420123	+	L40992|RUNX2|860|runt-related transcription factor 2##BC108919|RUNX2|860|runt-related transcription factor 2##BC108920|RUNX2|860|runt-related transcription factor 2##NM_004348|RUNX2|860|runt-related transcription factor 2##DQ892643|CLIC5|53405|chloride intracellular channel 5##DQ895881|CLIC5|53405|chloride intracellular channel 5##AF176920|CLIC5|53405|chloride intracellular channel 5##AK314416|CLIC5|53405|chloride intracellular channel 5##AK075163|CLIC5|53405|chloride intracellular channel 5##AK075144|CLIC5|53405|chloride intracellular channel 5##AF216941|CLIC5|53405|chloride intracellular channel 5##AK222544|CLIC5|53405|chloride intracellular channel 5##BC035968|CLIC5|53405|chloride intracellular channel 5##DQ679794|CLIC5|53405|chloride intracellular channel 5##AK223130|CLIC5|53405|chloride intracellular channel 5##NM_016929|CLIC5|53405|chloride intracellular channel 5##AY032602|CLIC5|53405|chloride intracellular channel 5##AK097048|CLIC5|53405|chloride intracellular channel 5##NM_001114086|CLIC5|53405|chloride intracellular channel 5##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	0.98707	0.0	denovo_WM_7:-68:0.881
chr1	200321279	200321390	reg1010822.p1	4.421	+	NM_001105517	-138679	+	AK316513 TSC_hg19_v1_chr1_+_200011716	-309610	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	-324465	+	AK021707 TSC_hg19_v1_chr1_-_200377270	55935	-	TSC_hg19_v1_chr1_-_200377488 AK022921	56204	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	57575	-	NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK021707|ZNF281|23528|zinc finger protein 281##AK022921|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281	0.092842	0.0	
chr1	236260451	236260578	reg1007259.p1	4.421	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-31774	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-32016	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	-32036	-	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	45362	+	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	184674	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	184802	-	BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1##BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)	0.0	0.0	
chr19	50879500	50879658	reg1011645.p1	4.421	+	AF090386 DQ891993 DQ895183 CU676086 AF200345 BC029397 AK308013 AK314364 BC017842 AF098484 NM_004851	-10676	-	BC085008 BC006149 BC111705 BC040958 BC053864 BC065203 BC032360 AF090387 AF098485 AF200344 AK300884 BC019048 AK310134 TSC_hg19_v1_chr19_-_50848025	-31587	-	AF055989 NM_004977	-46946	-	TSC_hg19_v1_chr19_+_50879744 NM_007121 AK297978 BC047750 CR749648 U07132 BC074500 AK290855 BC033500	148	+	AB209560 TSC_hg19_v1_chr19_+_50887563	7946	+	NM_002691 TSC_hg19_v1_chr19_+_50887592 M80397 M81735 BC008800	8025	+	AF090386|NAPSA|9476|napsin A aspartic peptidase##DQ891993|NAPSA|9476|napsin A aspartic peptidase##DQ895183|NAPSA|9476|napsin A aspartic peptidase##AF200345|NAPSA|9476|napsin A aspartic peptidase##BC029397|NAPSA|9476|napsin A aspartic peptidase##AK308013|NAPSA|9476|napsin A aspartic peptidase##AK314364|NAPSA|9476|napsin A aspartic peptidase##BC017842|NAPSA|9476|napsin A aspartic peptidase##AF098484|NAPSA|9476|napsin A aspartic peptidase##NM_004851|NAPSA|9476|napsin A aspartic peptidase##BC085008|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC006149|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC111705|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC040958|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC053864|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC065203|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC032360|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF090387|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF098485|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF200344|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK300884|NAPSB|256236|napsin B aspartic peptidase pseudogene##BC019048|NAPSB|256236|napsin B aspartic peptidase pseudogene##AK310134|NAPSB|256236|napsin B aspartic peptidase pseudogene##AF055989|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_004977|KCNC3|3748|potassium voltage-gated channel, Shaw-related subfamily, member 3##NM_007121|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK297978|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC047750|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##CR749648|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##U07132|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC074500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AK290855|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##BC033500|NR1H2|7376|nuclear receptor subfamily 1, group H, member 2##AB209560|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##NM_002691|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M80397|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##M81735|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa##BC008800|POLD1|5424|polymerase (DNA directed), delta 1, catalytic subunit 125kDa	0.0	0.0	
chr7	104231689	104231758	reg1015723.p2	4.421	+	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-262505	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-383292	-	NM_005045 NM_173054 U79716 AK293863 TSC_hg19_v1_chr7_-_103630014	-601727	-	TSC_hg19_v1_chr7_-_104567089 BC050337	335367	-	TSC_hg19_v1_chr7_-_104653491 AK124046	421759	-	TSC_hg19_v1_chr7_-_104654062 AK094372	422351	-	AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##NM_005045|RELN|5649|reelin##NM_173054|RELN|5649|reelin##U79716|RELN|5649|reelin##AK293863|RELN|5649|reelin##BC050337|LOC723809|723809|uncharacterized LOC723809##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545	0.0	0.0	
chr7	148759563	148759684	reg1011263.p2	4.421	+	TSC_hg19_v1_chr7_-_148725766 NM_004911	-33851	-	BC006344 BC011754 AK313299 TSC_hg19_v1_chr7_-_148725753	-33880	-	CU674214 DQ893573 DQ894347 TSC_hg19_v1_chr7_-_148725561 BC000425 BC001928 J05016 AK290971	-34068	-	AB463377 AM392873 AM392921 TSC_hg19_v1_chr7_-_148787811 BC109245 BC128392 AL834510 AK297472	28149	-	TSC_hg19_v1_chr7_-_148787844 BX647929 AK095701	28210	-	TSC_hg19_v1_chr7_-_148787872 NM_152411	28277	-	NM_004911|PDIA4|9601|protein disulfide isomerase family A, member 4##BC006344|PDIA4|9601|protein disulfide isomerase family A, member 4##BC011754|PDIA4|9601|protein disulfide isomerase family A, member 4##AK313299|PDIA4|9601|protein disulfide isomerase family A, member 4##DQ893573|PDIA4|9601|protein disulfide isomerase family A, member 4##DQ894347|PDIA4|9601|protein disulfide isomerase family A, member 4##BC000425|PDIA4|9601|protein disulfide isomerase family A, member 4##BC001928|PDIA4|9601|protein disulfide isomerase family A, member 4##AK290971|PDIA4|9601|protein disulfide isomerase family A, member 4##AM392873|ZNF786|136051|zinc finger protein 786##AM392921|ZNF786|136051|zinc finger protein 786##BC109245|ZNF786|136051|zinc finger protein 786##BC128392|ZNF786|136051|zinc finger protein 786##AL834510|ZNF786|136051|zinc finger protein 786##AK297472|ZNF786|136051|zinc finger protein 786##BX647929|ZNF786|136051|zinc finger protein 786##AK095701|ZNF786|136051|zinc finger protein 786##NM_152411|ZNF786|136051|zinc finger protein 786	1.283358	0.0	denovo_WM_7:-41:0.270
chr8	129662453	129662530	reg1012230.p1	4.421	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-855708	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-914001	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-914166	+	AB042405 NM_031415	1136642	-	BC003599 TSC_hg19_v1_chr8_-_130951934	1289424	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	1289515	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.869067	0.0	denovo_WM_7:18:0.365	denovo_WM_7:19:0.428
chr14	93571972	93572099	reg1007150.p2	4.420	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-182438	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	-182591	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	-311349	+	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	9556	-	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	10179	-	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	79165	-	AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1	0.9962	0.0	denovo_WM_7:19:0.249	denovo_WM_7:20:0.249	denovo_WM_7:21:0.249	denovo_WM_7:22:0.249
chr18	2897813	2897948	reg1010978.p2	4.420	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	-50849	+	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	-241966	+	TSC_hg19_v1_chr18_+_2571589 AF017790	-326285	+	AB026706 TSC_hg19_v1_chr18_+_2907037	9121	+	BC152448 D87436 NM_014646	114064	-	BC116183 BC116184 TSC_hg19_v1_chr18_-_3219875	321980	-	AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##AF017790|NDC80|10403|NDC80 kinetochore complex component homolog (S. cerevisiae)##AB026706|EMILIN2|84034|elastin microfibril interfacer 2##BC152448|LPIN2|9663|lipin 2##D87436|LPIN2|9663|lipin 2##NM_014646|LPIN2|9663|lipin 2##BC116183|MYOM1|8736|myomesin 1, 185kDa##BC116184|MYOM1|8736|myomesin 1, 185kDa	0.999409	0.0	denovo_WM_7:-10:0.739
chr21	26945110	26945290	reg1008063.p1	4.420	+	TSC_hg19_v1_chr21_+_26934442 AF402776	-10728	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1144132	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4574427	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	34615	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	66453	+	TSC_hg19_v1_chr21_+_27011769 AK312708 AY077698 AY016009 AX772824 AK294769	66637	+	AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2##AK312708|JAM2|58494|junctional adhesion molecule 2##AY077698|JAM2|58494|junctional adhesion molecule 2##AY016009|JAM2|58494|junctional adhesion molecule 2##AX772824|JAM2|58494|junctional adhesion molecule 2##AK294769|JAM2|58494|junctional adhesion molecule 2	0.0	0.0	
chr2	23589697	23589792	reg1012877.p2	4.420	+	TSC_hg19_v1_chr2_-_21266940 AK290844 NM_000384 X04506 X04714	-2322815	-	TSC_hg19_v1_chr2_-_21266896 J02610 M12681	-2322845	-	TSC_hg19_v1_chr2_-_21266818 AB587530 HM487065 M14081 M14162 BC051278	-2322923	-	NM_052920	18553	+	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	560202	-	TSC_hg19_v1_chr2_+_24150144 BC037901	560413	+	AK290844|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_000384|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04506|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04714|APOB|338|apolipoprotein B (including Ag(x) antigen)##J02610|APOB|338|apolipoprotein B (including Ag(x) antigen)##M12681|APOB|338|apolipoprotein B (including Ag(x) antigen)##HM487065|APOB|338|apolipoprotein B (including Ag(x) antigen)##M14081|APOB|338|apolipoprotein B (including Ag(x) antigen)##M14162|APOB|338|apolipoprotein B (including Ag(x) antigen)##BC051278|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037901|UBXN2A|165324|UBX domain protein 2A	0.999365	0.020206	
chr6_mann_hap4	2154383	2154499	reg1011967.p1	4.420	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.994572	0.0	
chr1	107146222	107146402	reg1015362.p1	4.419	+	NM_004038 NM_001008219 NM_001008218 BC063129 BC070302 AK313275 BC092444 BC132985 BC132987 BC132997 BC144452 BC132995	-2853810	+	NM_001008221 AK292341	-2854034	+	AK292341 NM_001008221	-2907241	-	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	453053	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	536430	+	AB023193 TSC_hg19_v1_chr1_+_107683657	537292	+	NM_004038|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008219|AMY1C|278|amylase, alpha 1C (salivary)##NM_001008218|AMY1B|277|amylase, alpha 1B (salivary)##BC063129|AMY1A|276|amylase, alpha 1A (salivary)##BC070302|AMY1A|276|amylase, alpha 1A (salivary)##AK313275|AMY1A|276|amylase, alpha 1A (salivary)##BC092444|AMY1A|276|amylase, alpha 1A (salivary)##BC132985|AMY1A|276|amylase, alpha 1A (salivary)##BC132987|AMY1A|276|amylase, alpha 1A (salivary)##BC132997|AMY1A|276|amylase, alpha 1A (salivary)##BC144452|AMY1A|276|amylase, alpha 1A (salivary)##BC132995|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AB023193|NTNG1|22854|netrin G1	0.640416	0.0	denovo_WM_7:3:0.595
chr1	120790119	120790283	reg1011260.p1	4.419	+	TSC_hg19_v1_chr1_-_120612318 NM_001200001 NM_024408	-177886	-	TSC_hg19_v1_chr1_-_120612272 BC071562	-177935	-	TSC_hg19_v1_chr1_-_120612211 AK307843	-177995	-	NM_001100910	48803	+	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	145708	-	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	145751	-	NM_001200001|NOTCH2|4853|notch 2##NM_024408|NOTCH2|4853|notch 2##BC071562|NOTCH2|4853|notch 2##AK307843|NOTCH2|4853|notch 2##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)	0.992182	0.0	
chr11	70452529	70452692	reg1012511.p2	4.419	+	TSC_hg19_v1_chr11_+_70244653 NM_001184740 NM_005231 NM_138565 AK222613 AK291097 BC033889 BC008799 M98343	-207957	+	TSC_hg19_v1_chr11_-_70244476 AK125463	-208095	-	D49354 TSC_hg19_v1_chr11_+_70194450	-258189	+	AF141901 BC114484 BC113876 TSC_hg19_v1_chr11_-_70507895	55257	-	TSC_hg19_v1_chr11_-_70507919 AB208027 NM_133266	55308	-	BC093885 BC112097 BC143389 TSC_hg19_v1_chr11_-_70507947	55340	-	NM_001184740|CTTN|2017|cortactin##NM_005231|CTTN|2017|cortactin##NM_138565|CTTN|2017|cortactin##AK222613|CTTN|2017|cortactin##AK291097|CTTN|2017|cortactin##BC033889|CTTN|2017|cortactin##BC008799|CTTN|2017|cortactin##M98343|CTTN|2017|cortactin##D49354|PPFIA1|8500|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1##AF141901|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC114484|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC113876|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##AB208027|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##NM_133266|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC093885|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC112097|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2##BC143389|SHANK2|22941|SH3 and multiple ankyrin repeat domains 2	1.949717	0.0	denovo_WM_7:11:0.860	denovo_WM_7:26:0.861
chr1	22087750	22087855	reg1003892.p1	4.419	+	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	-91969	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	-109455	-	AB003930 TSC_hg19_v1_chr1_-_21949064	-138765	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	21723	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	21832	-	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	21897	-	AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48	0.997645	0.0	denovo_WM_7:-7:0.951
chr1	240631234	240631338	reg1011812.p1	4.419	+	TSC_hg19_v1_chr1_+_240255182 NM_020066	-376109	+	AF279779 NM_000740	-838914	+	TSC_hg19_v1_chr1_+_239550016 AK056349	-1081344	+	BC046632 TSC_hg19_v1_chr1_-_240775431	144123	-	AK024848 TSC_hg19_v1_chr1_-_240775456 NM_022469	144168	-	AF090116 AK314862 TSC_hg19_v1_chr1_-_241520451	889132	-	NM_020066|FMN2|56776|formin 2##AF279779|CHRM3|1131|cholinergic receptor, muscarinic 3##NM_000740|CHRM3|1131|cholinergic receptor, muscarinic 3##AK056349|CHRM3|1131|cholinergic receptor, muscarinic 3##BC046632|GREM2|64388|gremlin 2##AK024848|GREM2|64388|gremlin 2##NM_022469|GREM2|64388|gremlin 2##AF090116|RGS7|6000|regulator of G-protein signaling 7##AK314862|RGS7|6000|regulator of G-protein signaling 7	0.245222	0.0	denovo_WM_7:-33:0.245
chr13	85439884	85440030	reg1015249.p2	4.419	+	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-983457	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-983532	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-4524893	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	933482	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	2884912	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	6610947	+	AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5	0.85264	0.0	denovo_WM_7:-42:0.276	denovo_WM_7:-43:0.443
chr17	38709875	38709959	reg1003381.p1	4.419	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-52071	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-110098	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-135793	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	11801	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	94153	-	BC069196 TSC_hg19_v1_chr17_-_38804818	94879	-	AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.0	0.0	
chr22	28671712	28671845	reg1013497.p1	4.419	+	TSC_hg19_v1_chr22_-_28315245 BC018704 D30037 AK313064 CR456541 NM_012399	-356514	-	TSC_hg19_v1_chr22_-_28315203 BC031427	-356571	-	TSC_hg19_v1_chr22_-_28315184 AB528209 CU013141 CU013429 CU689164 AK302367	-356604	-	TSC_hg19_v1_chr22_-_29075801 NM_001145418	404015	-	BC004207 AK289360 CR456418 NM_001005735 NM_007194 NM_145862 AK290754 AB164374	466039	-	BC000004 TSC_hg19_v1_chr22_+_29138056 NM_172002 BC065569 CR456462 AY191719 AB528150 CU013013 CU013301	466283	+	BC018704|PITPNB|23760|phosphatidylinositol transfer protein, beta##D30037|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK313064|PITPNB|23760|phosphatidylinositol transfer protein, beta##CR456541|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_012399|PITPNB|23760|phosphatidylinositol transfer protein, beta##BC031427|PITPNB|23760|phosphatidylinositol transfer protein, beta##CU013141|PITPNB|23760|phosphatidylinositol transfer protein, beta##CU013429|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK302367|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_001145418|TTC28|23331|tetratricopeptide repeat domain 28##BC004207|CHEK2|11200|checkpoint kinase 2##AK289360|CHEK2|11200|checkpoint kinase 2##CR456418|CHEK2|11200|checkpoint kinase 2##NM_001005735|CHEK2|11200|checkpoint kinase 2##NM_007194|CHEK2|11200|checkpoint kinase 2##NM_145862|CHEK2|11200|checkpoint kinase 2##AK290754|CHEK2|11200|checkpoint kinase 2##NM_172002|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##BC065569|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##CR456462|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)##AY191719|HSCB|150274|HscB iron-sulfur cluster co-chaperone homolog (E. coli)	0.981389	0.0	denovo_WM_7:-39:0.906
chr2	43023622	43023802	reg1001207.p4	4.419	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	-3961	-	AY158687 AB528920 AB083055 BC063549 NM_148962	-32412	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-227815	+	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	429633	-	TSC_hg19_v1_chr2_-_43453736 BC020369	430018	-	TSC_hg19_v1_chr2_-_43453744 NM_006887	430030	-	CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.0	0.0	
chr3	178922875	178922942	reg1018444.p2	4.419	+	TSC_hg19_v1_chr3_+_178866144 NM_006218 AK292940	-56670	+	TSC_hg19_v1_chr3_-_178789598 NM_022470 NM_152240	-133282	-	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	-133343	-	AF160968 NM_014407 BC113851	46501	-	NM_171830	46736	-	BC082272 NM_171829	54770	-	NM_006218|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##AK292940|PIK3CA|5290|phosphoinositide-3-kinase, catalytic, alpha polypeptide##NM_022470|ZMAT3|64393|zinc finger, matrin-type 3##NM_152240|ZMAT3|64393|zinc finger, matrin-type 3##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3##AF160968|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_014407|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC113851|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171830|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##BC082272|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3##NM_171829|KCNMB3|27094|potassium large conductance calcium-activated channel, subfamily M beta member 3	1.991981	0.0	denovo_WM_7:-70:0.248	denovo_WM_7:-71:0.213	denovo_WM_7:-90:0.214	denovo_WM_7:-91:0.249
chr8	26437367	26437547	reg1011892.p2	4.419	+	NM_001244604 TSC_hg19_v1_chr8_+_26435921 AK299077	-1530	+	TSC_hg19_v1_chr8_+_26435604 U17279 AB370194 AB590733 BT006944 CU691152	-1777	+	TSC_hg19_v1_chr8_+_26435468 AK223557 BC056408 D78013 BC010880 AK291287	-1930	+	U02569 AY491775 AY491776 AY491777 AY491778 AY491779 AY491780 AY491781 D25235 D32201 D32202 NM_000680 NM_033302 NM_033303 NM_033304	285461	-	AK311558 TSC_hg19_v1_chr8_-_26724735	287277	-	TSC_hg19_v1_chr8_-_26724764 AK289548	287301	-	NM_001244604|DPYSL2|1808|dihydropyrimidinase-like 2##AK299077|DPYSL2|1808|dihydropyrimidinase-like 2##U17279|DPYSL2|1808|dihydropyrimidinase-like 2##AB370194|DPYSL2|1808|dihydropyrimidinase-like 2##AK223557|DPYSL2|1808|dihydropyrimidinase-like 2##BC056408|DPYSL2|1808|dihydropyrimidinase-like 2##D78013|DPYSL2|1808|dihydropyrimidinase-like 2##AK291287|DPYSL2|1808|dihydropyrimidinase-like 2##U02569|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491775|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491776|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491777|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491778|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491780|ADRA1A|148|adrenergic, alpha-1A-, receptor##AY491781|ADRA1A|148|adrenergic, alpha-1A-, receptor##D25235|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32201|ADRA1A|148|adrenergic, alpha-1A-, receptor##D32202|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_000680|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033302|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033303|ADRA1A|148|adrenergic, alpha-1A-, receptor##NM_033304|ADRA1A|148|adrenergic, alpha-1A-, receptor##AK289548|ADRA1A|148|adrenergic, alpha-1A-, receptor	1.504733	0.0	denovo_WM_7:-40:0.289
chr10	13851479	13851584	reg1011863.p1	4.418	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-101842	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-222544	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-222588	+	TSC_hg19_v1_chr10_-_14050453 AK001072	198961	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	521319	-	TSC_hg19_v1_chr10_-_14646259 BC064407	794786	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.0	0.0	
chr10	70865218	70865396	reg1013096.p1	4.418	+	TSC_hg19_v1_chr10_+_70847860 D28395 BC022313 AK311873 BC015516 J03223 X17042 CU677333 AB528400	-17423	+	TSC_hg19_v1_chr10_+_70847855 NM_002727	-17471	+	NM_015634 TSC_hg19_v1_chr10_+_70748561 AB033105 BC006427 AK291343 BC012180	-116772	+	TSC_hg19_v1_chr10_+_70883915 NM_001035260 NM_004896 BC022505	18584	+	TSC_hg19_v1_chr10_+_70883933 BX649092 AK315496	18626	+	AK297142 TSC_hg19_v1_chr10_+_70883939	18633	+	D28395|SRGN|5552|serglycin##BC022313|SRGN|5552|serglycin##AK311873|SRGN|5552|serglycin##BC015516|SRGN|5552|serglycin##J03223|SRGN|5552|serglycin##X17042|SRGN|5552|serglycin##NM_002727|SRGN|5552|serglycin##NM_015634|KIAA1279|26128|KIAA1279##AB033105|KIAA1279|26128|KIAA1279##BC006427|KIAA1279|26128|KIAA1279##AK291343|KIAA1279|26128|KIAA1279##BC012180|KIAA1279|26128|KIAA1279##NM_001035260|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_004896|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BC022505|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##BX649092|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##AK315496|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##AK297142|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)	0.0	0.0	
chr14	73861098	73861207	reg1012614.p2	4.418	+	NM_173462 TSC_hg19_v1_chr14_+_73704238 BC042057 BC136623 BC144315	-156901	+	AJ008005 TSC_hg19_v1_chr14_+_73603214	-257940	+	TSC_hg19_v1_chr14_+_73603184 L42110	-257972	+	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	64080	-	TSC_hg19_v1_chr14_-_73925274 BX248781	64115	-	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	64139	-	NM_173462|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC042057|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC136623|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC144315|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##AJ008005|PSEN1|5663|presenilin 1##L42110|PSEN1|5663|presenilin 1##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)	0.99163	0.0	denovo_WM_7:-27:0.228	denovo_WM_7:-28:0.228	denovo_WM_7:-29:0.228	denovo_WM_7:-30:0.228
chr17	45282076	45282184	reg1011501.p1	4.418	+	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	-15446	-	TSC_hg19_v1_chr17_-_45266641 AK299342	-15491	-	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	-15552	-	NM_001002841 X52005	4320	+	NM_002476 TSC_hg19_v1_chr17_+_45286713 BC030228 M24121 M36172 X13955 AB528188 AM392523 AM392536 AM392902 AM393643 AM393677	4620	+	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	49054	+	NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001002841|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X52005|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##NM_002476|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC030228|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M24121|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M36172|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X13955|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392523|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392536|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392902|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393643|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393677|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	0.99961	0.0	denovo_WM_7:-23:0.443	denovo_WM_7:-24:0.443
chr3	49467089	49467269	reg1001801.p2	4.418	+	TSC_hg19_v1_chr3_-_49466744 AK313073 NM_032316 AK301846	-427	-	TSC_hg19_v1_chr3_-_49466731 BC005050 AK094248 AF538150 AJ299740 BC050653	-476	-	NM_000481 NM_001164710 NM_001164711 NM_001164712 TSC_hg19_v1_chr3_-_49460121	-7063	-	TSC_hg19_v1_chr3_+_49506079 NM_001177643	38928	+	TSC_hg19_v1_chr3_+_49507721 NM_001165928 NM_001177634 NM_001177635 NM_001177636 NM_001177637 NM_001177638 NM_001177639 NM_001177640 NM_001177641 NM_001177642 NM_001177644 NM_004393 L19711 BC012740 BC014616 AK291692	40612	+	TSC_hg19_v1_chr3_+_49547870 DQ893491 DQ896435	80738	+	AK313073|NICN1|84276|nicolin 1##NM_032316|NICN1|84276|nicolin 1##AK301846|NICN1|84276|nicolin 1##BC005050|NICN1|84276|nicolin 1##AK094248|NICN1|84276|nicolin 1##AF538150|NICN1|84276|nicolin 1##AJ299740|NICN1|84276|nicolin 1##BC050653|NICN1|84276|nicolin 1##NM_000481|AMT|275|aminomethyltransferase##NM_001164710|AMT|275|aminomethyltransferase##NM_001164711|AMT|275|aminomethyltransferase##NM_001164712|AMT|275|aminomethyltransferase##NM_001177643|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001165928|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177634|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177635|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177636|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177637|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177638|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177639|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177640|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177641|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177642|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177644|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_004393|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##L19711|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC012740|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC014616|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK291692|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ893491|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ896435|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)	0.0	0.0	
chr6	107077266	107077446	reg1006133.p2	4.418	+	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	-76	-	TSC_hg19_v1_chr6_+_106960443 U83115	-116945	+	AK056705 NM_001624	-117627	+	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	141	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	272116	+	BC131628 NM_001080450	358279	-	BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3	0.0	0.0	
chr10	94502115	94502258	reg1014877.p2	4.417	+	TSC_hg19_v1_chr10_+_94449711 NM_002729 AK309463 AK314891 BC014336 BC015110 L16499 X67235 AB528006 BC050638 EU446478	-52477	+	TSC_hg19_v1_chr10_+_94352960 BC126211 BC136474 U37426 X85137	-149143	+	TSC_hg19_v1_chr10_+_94352886 BC050421 BC050667 AK314258	-149289	+	NM_001013848	92283	+	AK293857 NM_019053 AF220217 TSC_hg19_v1_chr10_+_94608276 AL832501 EF571007 AK315544 BC028395 CU688490 EU832839 GQ129240	106071	+	AY356349 NM_183374	318834	+	NM_002729|HHEX|3087|hematopoietically expressed homeobox##AK314891|HHEX|3087|hematopoietically expressed homeobox##BC014336|HHEX|3087|hematopoietically expressed homeobox##BC015110|HHEX|3087|hematopoietically expressed homeobox##L16499|HHEX|3087|hematopoietically expressed homeobox##X67235|HHEX|3087|hematopoietically expressed homeobox##BC050638|HHEX|3087|hematopoietically expressed homeobox##EU446478|HHEX|3087|hematopoietically expressed homeobox##BC126211|KIF11|3832|kinesin family member 11##BC136474|KIF11|3832|kinesin family member 11##U37426|KIF11|3832|kinesin family member 11##X85137|KIF11|3832|kinesin family member 11##BC050421|KIF11|3832|kinesin family member 11##BC050667|KIF11|3832|kinesin family member 11##AK314258|KIF11|3832|kinesin family member 11##NM_001013848|EXOC6|54536|exocyst complex component 6##AK293857|EXOC6|54536|exocyst complex component 6##NM_019053|EXOC6|54536|exocyst complex component 6##AF220217|EXOC6|54536|exocyst complex component 6##AL832501|EXOC6|54536|exocyst complex component 6##EF571007|EXOC6|54536|exocyst complex component 6##AK315544|EXOC6|54536|exocyst complex component 6##BC028395|EXOC6|54536|exocyst complex component 6##EU832839|EXOC6|54536|exocyst complex component 6##GQ129240|EXOC6|54536|exocyst complex component 6##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1	0.0	0.0	
chr12	68981261	68981365	reg1010120.p2	4.417	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-255207	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-334009	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-361761	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	23333	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	23382	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	23395	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.0	0.0	
chr2	65091988	65092116	reg1011734.p1	4.417	+	TSC_hg19_v1_chr2_-_65090764 AK097952	-1311	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-211005	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-211203	-	TSC_hg19_v1_chr2_-_65159574 BC037562	67525	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	123548	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	124439	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.997813	0.0	denovo_WM_7:15:0.880
chr2	88861336	88861475	reg1016364.p1	4.417	+	AK058098 NM_152670 BC029522	-37221	+	NM_001135649	-109353	-	NM_018271 BC050699 BC035315 AK001778	-388649	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	65573	-	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	129810	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	203996	+	AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##NM_001135649|FOXI3|344167|forkhead box I3##NM_018271|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC050699|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##BC035315|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AK001778|THNSL2|55258|threonine synthase-like 2 (S. cerevisiae)##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.915456	0.0	denovo_WM_7:-20:0.915
chr3	5830291	5830386	reg1014313.p1	4.417	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-600847	+	TSC_hg19_v1_chr3_+_5229430 D86967	-600905	+	BC019088 NM_014674 TSC_hg19_v1_chr3_+_5229369	-600975	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	1072461	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	1072560	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	2712992	-	DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##D86967|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##BC019088|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##NM_014674|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK124088|LOC100288428|100288428|uncharacterized LOC100288428	1.25718	0.0	denovo_WM_7:47:0.230	denovo_WM_7:60:0.386
chr6	17707291	17707471	reg1009898.p2	4.417	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	-479	-	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	-106782	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-313599	+	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	280379	-	TSC_hg19_v1_chr6_-_17987867 BC062673 NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113	280485	-	AY324850 BC103888 BC103889 BC103890 NM_198586	415469	-	Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A##BC062673|KIF13A|63971|kinesin family member 13A##NM_001105566|KIF13A|63971|kinesin family member 13A##NM_001105567|KIF13A|63971|kinesin family member 13A##NM_001105568|KIF13A|63971|kinesin family member 13A##NM_001243423|KIF13A|63971|kinesin family member 13A##NM_022113|KIF13A|63971|kinesin family member 13A##AY324850|NHLRC1|378884|NHL repeat containing 1##BC103888|NHLRC1|378884|NHL repeat containing 1##BC103889|NHLRC1|378884|NHL repeat containing 1##BC103890|NHLRC1|378884|NHL repeat containing 1##NM_198586|NHLRC1|378884|NHL repeat containing 1	0.0	0.0	
chr7	150016207	150016339	reg1011564.p1	4.417	+	AB039791 NM_001164459	-16205	-	TSC_hg19_v1_chr7_+_149571066 BX640846 AK290086 AK094602 AK098362 AK172725 DQ995344 AY037164	-445192	+	BC023225 TSC_hg19_v1_chr7_-_149570892 BC028735	-445378	-	TSC_hg19_v1_chr7_+_150020443 NM_001142928 NM_023942 AK055954	4131	+	TSC_hg19_v1_chr7_+_150020552 BC001354	4303	+	BX640643 NM_001164458	4436	-	AB039791|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164459|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##BX640846|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK290086|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK094602|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK098362|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AK172725|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##DQ995344|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##AY037164|ATP6V0E2|155066|ATPase, H+ transporting V0 subunit e2##BC023225|LOC401431|401431|uncharacterized LOC401431##BC028735|LOC401431|401431|uncharacterized LOC401431##NM_001142928|LRRC61|65999|leucine rich repeat containing 61##NM_023942|LRRC61|65999|leucine rich repeat containing 61##AK055954|LRRC61|65999|leucine rich repeat containing 61##BC001354|LRRC61|65999|leucine rich repeat containing 61##BX640643|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)##NM_001164458|ACTR3C|653857|ARP3 actin-related protein 3 homolog C (yeast)	0.996744	0.0	denovo_WM_7:29:0.449	denovo_WM_7:30:0.449
chr7	77427917	77428097	reg1002650.p2	4.417	+	TSC_hg19_v1_chr7_-_77427744 AF260336 NM_032936	-260	-	BC012192 TSC_hg19_v1_chr7_-_77427680 BC065930	-339	-	TSC_hg19_v1_chr7_+_77325775 NM_198467 BC059402 BC046353	-102250	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	134	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	203	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	41502	+	AF260336|TMEM60|85025|transmembrane protein 60##NM_032936|TMEM60|85025|transmembrane protein 60##BC012192|TMEM60|85025|transmembrane protein 60##BC065930|TMEM60|85025|transmembrane protein 60##NM_198467|RSBN1L|222194|round spermatid basic protein 1-like##BC059402|RSBN1L|222194|round spermatid basic protein 1-like##BC046353|RSBN1L|222194|round spermatid basic protein 1-like##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2	0.0	0.0	
chr8	69009476	69009586	reg1010309.p2	4.417	+	AK294299 TSC_hg19_v1_chr8_+_68864738	-144801	+	TSC_hg19_v1_chr8_+_68864614 AY570973	-144898	+	TSC_hg19_v1_chr8_+_68864598 AY508996 AY508997 NM_024870 NM_025170	-144936	+	BC041961 NM_001195639 NM_052958	233425	+	AK095341 NM_001128204 NM_015170 TSC_hg19_v1_chr8_+_70378858 AF545571	1369334	+	TSC_hg19_v1_chr8_+_70379077 AK307951	1369549	+	AK294299|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY570973|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508996|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##AY508997|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_024870|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##NM_025170|PREX2|80243|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2##BC041961|C8orf34|116328|chromosome 8 open reading frame 34##NM_001195639|C8orf34|116328|chromosome 8 open reading frame 34##NM_052958|C8orf34|116328|chromosome 8 open reading frame 34##AK095341|SULF1|23213|sulfatase 1##NM_001128204|SULF1|23213|sulfatase 1##NM_015170|SULF1|23213|sulfatase 1##AF545571|SULF1|23213|sulfatase 1##AK307951|SULF1|23213|sulfatase 1	1.839034	0.0	denovo_WM_7:-14:0.800	denovo_WM_7:36:0.252	denovo_WM_7:39:0.504
chr9	2015563	2015675	reg1010219.p2	4.417	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-323	+	AF130729 NM_181872	-965010	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-965249	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	606188	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	606455	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	606493	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chr10	52020492	52020644	reg1013429.p1	4.416	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-12228	-	NM_018232	-182683	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-192846	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	363135	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	479142	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	624825	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.0	0.0	
chr13	102964483	102964609	reg1013290.p1	4.416	+	NM_004115 U66200	-395552	-	TSC_hg19_v1_chr13_+_102104985 AF072752 NM_004791 AK095875 AB008375 AK297744 BC036788 AK291340 AK308194	-859551	+	TSC_hg19_v1_chr13_-_102068838 BC028390	-895706	-	AB590819 BC100920 BC100921 BC100922 AY188178 NM_175929	89529	-	NM_003291 TSC_hg19_v1_chr13_+_103249354 BC039905 M73047 AK304313 BC024905 CU691800	284790	+	HQ258371 NM_001010977 BC132748 BC132750	382312	-	NM_004115|FGF14|2259|fibroblast growth factor 14##U66200|FGF14|2259|fibroblast growth factor 14##AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC028390|NALCN|259232|sodium leak channel, non-selective##BC100920|FGF14|2259|fibroblast growth factor 14##BC100921|FGF14|2259|fibroblast growth factor 14##BC100922|FGF14|2259|fibroblast growth factor 14##AY188178|FGF14|2259|fibroblast growth factor 14##NM_175929|FGF14|2259|fibroblast growth factor 14##NM_003291|TPP2|7174|tripeptidyl peptidase II##BC039905|TPP2|7174|tripeptidyl peptidase II##M73047|TPP2|7174|tripeptidyl peptidase II##AK304313|TPP2|7174|tripeptidyl peptidase II##BC024905|TPP2|7174|tripeptidyl peptidase II##HQ258371|METTL21C|196541|methyltransferase like 21C##NM_001010977|METTL21C|196541|methyltransferase like 21C##BC132748|METTL21C|196541|methyltransferase like 21C##BC132750|METTL21C|196541|methyltransferase like 21C	1.10668	0.0	denovo_WM_7:34:0.313	denovo_WM_7:35:0.313	denovo_WM_7:36:0.313
chr17	72516556	72516657	reg1009068.p2	4.416	+	TSC_hg19_v1_chr17_+_72462821 AF161346 AJ010101 AJ010102 AJ010103 AJ238323 AK309636 BC020681 AB590938 CU689350	-53796	+	AF020314 TSC_hg19_v1_chr17_+_72462772	-53836	+	NM_007261 AJ224864 BC032352	-54068	+	AF427618 AY359025 TSC_hg19_v1_chr17_-_72527570 AY646929	10937	-	TSC_hg19_v1_chr17_-_72527597 DQ893585 DQ896833 BC028091 AK290925 AK298665 NM_174892	10996	-	X66171 TSC_hg19_v1_chr17_-_72542230	25583	-	AF161346|CD300A|11314|CD300a molecule##AJ010101|CD300A|11314|CD300a molecule##AJ010102|CD300A|11314|CD300a molecule##AJ010103|CD300A|11314|CD300a molecule##AJ238323|CD300A|11314|CD300a molecule##AK309636|CD300A|11314|CD300a molecule##BC020681|CD300A|11314|CD300a molecule##AF020314|CD300A|11314|CD300a molecule##NM_007261|CD300A|11314|CD300a molecule##AJ224864|CD300A|11314|CD300a molecule##BC032352|CD300A|11314|CD300a molecule##AF427618|CD300LB|124599|CD300 molecule-like family member b##AY359025|CD300LB|124599|CD300 molecule-like family member b##AY646929|CD300LB|124599|CD300 molecule-like family member b##DQ893585|CD300LB|124599|CD300 molecule-like family member b##DQ896833|CD300LB|124599|CD300 molecule-like family member b##BC028091|CD300LB|124599|CD300 molecule-like family member b##AK290925|CD300LB|124599|CD300 molecule-like family member b##AK298665|CD300LB|124599|CD300 molecule-like family member b##NM_174892|CD300LB|124599|CD300 molecule-like family member b##X66171|CD300C|10871|CD300c molecule	0.996942	0.0	denovo_WM_7:28:0.841
chr2	69608601	69608725	reg1012965.p1	4.416	+	TSC_hg19_v1_chr2_+_69240310 NM_018153 NM_032208 NM_053034 AF279145 AK001463 AY928974 AY928975 AY928976 AY928977 AK223273 BC012074 AK309553 AF421380 AK292113 CU680200 EU832615 EU832687	-368280	+	AB039886 AJ966789 NM_019617 AB590637 AY139184 AK098489 AY456961 BC059778 AY359050	-406921	+	BC110809 AJ966788 AY943908 AF494509 AY358664 NM_182536	-428607	-	TSC_hg19_v1_chr2_-_69614353 M90516 BC045641 NM_001244710 NM_002056	5742	-	AJ132584 AF132967 AB528729 HQ258750 TSC_hg19_v1_chr2_-_69664568 AK300700 AK308567	55910	-	TSC_hg19_v1_chr2_-_69664606 AY286306 AY286307 BX538347	55951	-	NM_018153|ANTXR1|84168|anthrax toxin receptor 1##NM_032208|ANTXR1|84168|anthrax toxin receptor 1##NM_053034|ANTXR1|84168|anthrax toxin receptor 1##AF279145|ANTXR1|84168|anthrax toxin receptor 1##AK001463|ANTXR1|84168|anthrax toxin receptor 1##AK223273|ANTXR1|84168|anthrax toxin receptor 1##BC012074|ANTXR1|84168|anthrax toxin receptor 1##AK309553|ANTXR1|84168|anthrax toxin receptor 1##AF421380|ANTXR1|84168|anthrax toxin receptor 1##AK292113|ANTXR1|84168|anthrax toxin receptor 1##EU832615|ANTXR1|84168|anthrax toxin receptor 1##EU832687|ANTXR1|84168|anthrax toxin receptor 1##AB039886|GKN1|56287|gastrokine 1##AJ966789|GKN1|56287|gastrokine 1##NM_019617|GKN1|56287|gastrokine 1##AY139184|GKN1|56287|gastrokine 1##AK098489|GKN1|56287|gastrokine 1##AY456961|GKN1|56287|gastrokine 1##BC059778|GKN1|56287|gastrokine 1##AY359050|GKN1|56287|gastrokine 1##BC110809|GKN2|200504|gastrokine 2##AJ966788|GKN2|200504|gastrokine 2##AY943908|GKN2|200504|gastrokine 2##AF494509|GKN2|200504|gastrokine 2##AY358664|GKN2|200504|gastrokine 2##NM_182536|GKN2|200504|gastrokine 2##M90516|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##BC045641|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##NM_001244710|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##NM_002056|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##AJ132584|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AF132967|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##HQ258750|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK300700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK308567|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286306|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286307|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BX538347|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)	0.99951	0.0	denovo_WM_7:33:0.425	denovo_WM_7:34:0.425
chr8	96240576	96240711	reg1010223.p1	4.416	+	TSC_hg19_v1_chr8_+_96146116 AK023249	-94507	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	-94635	+	TSC_hg19_v1_chr8_+_96145948 NM_024613	-94698	+	TSC_hg19_v1_chr8_+_96281043 GU295153 GU295154 GU295155 GU295156 GU295157 GU295158 GU295159 GU295160 GU295161 GU295162 GU295163	40408	+	TSC_hg19_v1_chr8_-_96281430 BC036855 BC150301 AK055162 GQ240139 NM_177965	40822	-	BC127948 BC127947 AJ537424 NM_001001557	932338	-	AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##GU295153|LOC100616530|100616530|tospeak##GU295154|LOC100616530|100616530|tospeak##GU295155|LOC100616530|100616530|tospeak##GU295156|LOC100616530|100616530|tospeak##GU295157|LOC100616530|100616530|tospeak##GU295158|LOC100616530|100616530|tospeak##GU295159|LOC100616530|100616530|tospeak##GU295160|LOC100616530|100616530|tospeak##GU295161|LOC100616530|100616530|tospeak##GU295162|LOC100616530|100616530|tospeak##GU295163|LOC100616530|100616530|tospeak##BC036855|C8orf37|157657|chromosome 8 open reading frame 37##BC150301|C8orf37|157657|chromosome 8 open reading frame 37##AK055162|C8orf37|157657|chromosome 8 open reading frame 37##GQ240139|C8orf37|157657|chromosome 8 open reading frame 37##NM_177965|C8orf37|157657|chromosome 8 open reading frame 37##BC127948|GDF6|392255|growth differentiation factor 6##BC127947|GDF6|392255|growth differentiation factor 6##AJ537424|GDF6|392255|growth differentiation factor 6##NM_001001557|GDF6|392255|growth differentiation factor 6	0.0	0.0	
chrX	46283281	46283443	reg1014435.p2	4.416	+	BC035375 AY358764 TSC_hg19_v1_chrX_-_45060106 BC137528 BC137529 AK024165 NM_024689 NM_176819	-1223249	-	TSC_hg19_v1_chrX_+_44732433 NM_021140 AB208795	-1550926	+	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	-1580049	+	NM_001129898 NM_001129899 NM_001129900 NM_017776 TSC_hg19_v1_chrX_+_46306706 AK289703 AK096413 AK000351	23349	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	121494	-	BC034616 TSC_hg19_v1_chrX_+_46404957 AK056314	121582	+	BC035375|CXorf36|79742|chromosome X open reading frame 36##AY358764|CXorf36|79742|chromosome X open reading frame 36##BC137528|CXorf36|79742|chromosome X open reading frame 36##BC137529|CXorf36|79742|chromosome X open reading frame 36##AK024165|CXorf36|79742|chromosome X open reading frame 36##NM_024689|CXorf36|79742|chromosome X open reading frame 36##NM_176819|CXorf36|79742|chromosome X open reading frame 36##NM_021140|KDM6A|7403|lysine (K)-specific demethylase 6A##AB208795|KDM6A|7403|lysine (K)-specific demethylase 6A##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21##NM_001129898|ZNF673|55634|zinc finger family member 673##NM_001129899|ZNF673|55634|zinc finger family member 673##NM_001129900|ZNF673|55634|zinc finger family member 673##NM_017776|ZNF673|55634|zinc finger family member 673##AK289703|ZNF673|55634|zinc finger family member 673##AK096413|ZNF673|55634|zinc finger family member 673##AK000351|ZNF673|55634|zinc finger family member 673##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674##BC034616|LOC401588|401588|uncharacterized LOC401588##AK056314|LOC401588|401588|uncharacterized LOC401588	0.026285	0.0	
chr12	56061344	56061460	reg1002453.p2	4.415	+	BC136914 AB529283 NM_206899	-30743	+	BC137000 BC137001 NM_001005494	-116406	+	NM_001005519	-175241	+	AK290112 NM_152637 TSC_hg19_v1_chr12_+_56075356	13941	+	BC020509 TSC_hg19_v1_chr12_+_56075425 AY358508	14037	+	AF052050 AF072132 AY358882 TSC_hg19_v1_chr12_-_56101636 AF032108 AB210036	40158	-	BC136914|OR10P1|121130|olfactory receptor, family 10, subfamily P, member 1##NM_206899|OR10P1|121130|olfactory receptor, family 10, subfamily P, member 1##BC137000|OR6C4|341418|olfactory receptor, family 6, subfamily C, member 4##BC137001|OR6C4|341418|olfactory receptor, family 6, subfamily C, member 4##NM_001005494|OR6C4|341418|olfactory receptor, family 6, subfamily C, member 4##NM_001005519|OR6C68|403284|olfactory receptor, family 6, subfamily C, member 68##AK290112|METTL7B|196410|methyltransferase like 7B##NM_152637|METTL7B|196410|methyltransferase like 7B##BC020509|METTL7B|196410|methyltransferase like 7B##AY358508|METTL7B|196410|methyltransferase like 7B##AF052050|ITGA7|3679|integrin, alpha 7##AF072132|ITGA7|3679|integrin, alpha 7##AY358882|ITGA7|3679|integrin, alpha 7##AF032108|ITGA7|3679|integrin, alpha 7##AB210036|ITGA7|3679|integrin, alpha 7	1.146867	0.0	denovo_WM_7:60:0.674	denovo_WM_7:61:0.224
chr1	45276903	45277034	reg1016650.p1	4.415	+	NM_001136537 TSC_hg19_v1_chr1_+_45274197 AK304611 AK056150	-2758	+	BC092499 DQ132441 NM_001013632	-4012	-	TSC_hg19_v1_chr1_+_45266048 AB209875 EU832631 EU832706 BC004135 BC004198 BC013960 U56998	-10836	+	AF087651 AF091501 AY358555 AB527344 AY359016 AF119569 NM_001166292 NM_003738 BC143712	31669	-	TSC_hg19_v1_chr1_-_45452256 BC021017 BC018728 AK022399 AF257077 BC014234 AL834288	175269	-	AK314668 TSC_hg19_v1_chr1_-_45452268 AK024006 NM_001166588 NM_020365	175345	-	NM_001136537|BTBD19|149478|BTB (POZ) domain containing 19##AK304611|BTBD19|149478|BTB (POZ) domain containing 19##AK056150|BTBD19|149478|BTB (POZ) domain containing 19##BC092499|TCTEX1D4|343521|Tctex1 domain containing 4##DQ132441|TCTEX1D4|343521|Tctex1 domain containing 4##NM_001013632|TCTEX1D4|343521|Tctex1 domain containing 4##AB209875|PLK3|1263|polo-like kinase 3##EU832631|PLK3|1263|polo-like kinase 3##EU832706|PLK3|1263|polo-like kinase 3##BC004135|PLK3|1263|polo-like kinase 3##BC004198|PLK3|1263|polo-like kinase 3##BC013960|PLK3|1263|polo-like kinase 3##U56998|PLK3|1263|polo-like kinase 3##AF087651|PTCH2|8643|patched 2##AF091501|PTCH2|8643|patched 2##AY358555|PTCH2|8643|patched 2##AY359016|PTCH2|8643|patched 2##AF119569|PTCH2|8643|patched 2##NM_001166292|PTCH2|8643|patched 2##NM_003738|PTCH2|8643|patched 2##BC143712|PTCH2|8643|patched 2##BC021017|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##BC018728|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##AK022399|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##AF257077|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##BC014234|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##AL834288|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##AK314668|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##AK024006|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##NM_001166588|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa##NM_020365|EIF2B3|8891|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa	0.989901	0.0	
chr15	65137341	65137488	reg1010784.p2	4.415	+	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	-3307	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-19579	-	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-69668	-	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	66675	+	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	144395	-	TSC_hg19_v1_chr15_-_65282170 AK172849 AK225527 AK312943 BC000244	144720	-	NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK172849|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK225527|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK312943|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##BC000244|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.992812	0.0	
chr16	8945576	8945756	reg1003093.p1	4.415	+	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-53968	+	TSC_hg19_v1_chr16_-_8891497 BC015912 AK225638 AL080088 AK314404 NM_015421 AK093383	-54121	-	TSC_hg19_v1_chr16_+_8814575 AK290501 NM_001127448 AK310771	-131086	+	NM_001042476 BC001333	16586	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	17194	-	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	111629	-	NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##BC015912|TMEM186|25880|transmembrane protein 186##AK225638|TMEM186|25880|transmembrane protein 186##AL080088|TMEM186|25880|transmembrane protein 186##AK314404|TMEM186|25880|transmembrane protein 186##NM_015421|TMEM186|25880|transmembrane protein 186##AK093383|TMEM186|25880|transmembrane protein 186##AK290501|ABAT|18|4-aminobutyrate aminotransferase##NM_001127448|ABAT|18|4-aminobutyrate aminotransferase##AK310771|ABAT|18|4-aminobutyrate aminotransferase##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)	0.0	0.0	
chr3	107409409	107409578	reg1004064.p1	4.415	+	NM_001142568 NM_020235 AF283775 AF454941 TSC_hg19_v1_chr3_+_107241834 AF161457 AK314434 AK057010 AK291757 AF276949 BC131718	-167644	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	-313183	+	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	-449901	+	AB590342 BT006907 DQ890756 DQ891811 DQ893920 TSC_hg19_v1_chr3_-_107809906 BC010016 BC012884 X69398 BC037306 AK289813 Z25521 NM_001777 NM_198793	400380	-	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	531799	-	AK315109 AK296644 TSC_hg19_v1_chr3_+_108015400 AK000692	605908	+	NM_001142568|BBX|56987|bobby sox homolog (Drosophila)##NM_020235|BBX|56987|bobby sox homolog (Drosophila)##AF283775|BBX|56987|bobby sox homolog (Drosophila)##AF454941|BBX|56987|bobby sox homolog (Drosophila)##AF161457|BBX|56987|bobby sox homolog (Drosophila)##AK314434|BBX|56987|bobby sox homolog (Drosophila)##AK057010|BBX|56987|bobby sox homolog (Drosophila)##AK291757|BBX|56987|bobby sox homolog (Drosophila)##AF276949|BBX|56987|bobby sox homolog (Drosophila)##BC131718|BBX|56987|bobby sox homolog (Drosophila)##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##BT006907|CD47|961|CD47 molecule##DQ890756|CD47|961|CD47 molecule##DQ891811|CD47|961|CD47 molecule##DQ893920|CD47|961|CD47 molecule##BC010016|CD47|961|CD47 molecule##BC012884|CD47|961|CD47 molecule##X69398|CD47|961|CD47 molecule##BC037306|CD47|961|CD47 molecule##AK289813|CD47|961|CD47 molecule##Z25521|CD47|961|CD47 molecule##NM_001777|CD47|961|CD47 molecule##NM_198793|CD47|961|CD47 molecule##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK315109|HHLA2|11148|HERV-H LTR-associating 2##AK296644|HHLA2|11148|HERV-H LTR-associating 2##AK000692|HHLA2|11148|HERV-H LTR-associating 2	0.0	0.968137	CTCF.p2:62:0.968
chr3	195887948	195888065	reg1010718.p2	4.415	+	TSC_hg19_v1_chr3_-_195808999 NM_001128148	-78990	-	TSC_hg19_v1_chr3_-_195808984 M11507	-79023	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	-79045	-	BC034801 BC022078 NM_001039617 AK122907	50275	-	AK172837 NM_152672 TSC_hg19_v1_chr3_+_195943404 AK300996	55388	+	L28957 TSC_hg19_v1_chr3_-_196014549 AK309300 AK313450	126529	-	NM_001128148|TFRC|7037|transferrin receptor (p90, CD71)##M11507|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)##BC034801|ZDHHC19|131540|zinc finger, DHHC-type containing 19##BC022078|ZDHHC19|131540|zinc finger, DHHC-type containing 19##NM_001039617|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK122907|ZDHHC19|131540|zinc finger, DHHC-type containing 19##AK172837|OSTalpha|200931|organic solute transporter alpha##NM_152672|OSTalpha|200931|organic solute transporter alpha##AK300996|OSTalpha|200931|organic solute transporter alpha##L28957|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK309300|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha##AK313450|PCYT1A|5130|phosphate cytidylyltransferase 1, choline, alpha	1.9781	0.0	denovo_WM_7:-29:0.951	denovo_WM_7:-44:0.951
chr7	113722092	113722219	reg1013321.p2	4.415	+	X78578 AF024579 HQ258594 BC070313 BC056666 NM_002711 BC126451 BC126453	-163072	-	TSC_hg19_v1_chr7_-_112758613 BC107860	-963526	-	TSC_hg19_v1_chr7_-_112758606 BC065765 BX537645	-963549	-	TSC_hg19_v1_chr7_+_113726381 AK131266	4266	+	TSC_hg19_v1_chr7_+_113726514 AF454830	4348	+	TSC_hg19_v1_chr7_+_113726599 CR749236	4448	+	X78578|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##AF024579|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##HQ258594|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC070313|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC056666|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##NM_002711|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC126451|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC126453|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC107860|LOC401397|401397|uncharacterized LOC401397##BC065765|LOC401397|401397|uncharacterized LOC401397##BX537645|LOC401397|401397|uncharacterized LOC401397##AK131266|FOXP2|93986|forkhead box P2##AF454830|FOXP2|93986|forkhead box P2##CR749236|FOXP2|93986|forkhead box P2	0.0	0.0	
chr4	43278069	43278249	reg1011555.p1	4.414	+	AB528853 NM_001080476	-382878	+	BC109317 AB013452 AF067820 BC109318 AB587324 TSC_hg19_v1_chr4_-_42659111 AB209687 BC020943 AK295616 NM_001105529 NM_006095	-619071	-	NM_001080505	-878304	+	AK298831 HQ258617 TSC_hg19_v1_chr4_-_44450559 BC132743 BC136793	1172394	-	AK123347 NM_198353	1172664	-	AK096895 BC103995 BC103996 NM_182592	1375498	-	NM_001080476|GRXCR1|389207|glutaredoxin, cysteine rich 1##BC109317|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB013452|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AF067820|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC109318|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##AB209687|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##BC020943|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001105529|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_006095|ATP8A1|10396|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1##NM_001080505|SHISA3|152573|shisa homolog 3 (Xenopus laevis)##AK298831|KCTD8|386617|potassium channel tetramerisation domain containing 8##HQ258617|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC132743|KCTD8|386617|potassium channel tetramerisation domain containing 8##BC136793|KCTD8|386617|potassium channel tetramerisation domain containing 8##AK123347|KCTD8|386617|potassium channel tetramerisation domain containing 8##NM_198353|KCTD8|386617|potassium channel tetramerisation domain containing 8##AK096895|YIPF7|285525|Yip1 domain family, member 7##BC103995|YIPF7|285525|Yip1 domain family, member 7##BC103996|YIPF7|285525|Yip1 domain family, member 7##NM_182592|YIPF7|285525|Yip1 domain family, member 7	1.882692	0.0	denovo_WM_7:-16:0.788	denovo_WM_7:-31:0.380	denovo_WM_7:-32:0.510
chr9	37402416	37402590	reg1003306.p1	4.414	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-281920	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-281995	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-282017	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	20203	+	BC010007 TSC_hg19_v1_chr9_-_37465267	62757	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	62892	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	1.007252	0.0	denovo_WM_7:-61:0.976
chr1	31933040	31933201	reg1014178.p1	4.413	+	AK093784 AK316357 AX748305 NM_001199039 NM_018565 AK296118	-46433	+	AY094595 NM_178865 TSC_hg19_v1_chr1_+_31886059 AK309409 AK308031 AY358560 BC063006 BC084580 BC126283 BC126285 GQ129287 GQ129288 HQ258415	-47054	+	NM_001199037 AK298512	-50087	+	NM_001204414 NM_022164 TSC_hg19_v1_chr1_+_32042115 AK292770 AK075398 AK296322 AK298382	108983	+	TSC_hg19_v1_chr1_+_32042122 AY358421	109002	+	TSC_hg19_v1_chr1_+_32042144 BC064633 AB050716 AK298038 AF236150 AF205436	109022	+	AK093784|SERINC2|347735|serine incorporator 2##AK316357|SERINC2|347735|serine incorporator 2##NM_001199039|SERINC2|347735|serine incorporator 2##NM_018565|SERINC2|347735|serine incorporator 2##AK296118|SERINC2|347735|serine incorporator 2##AY094595|SERINC2|347735|serine incorporator 2##NM_178865|SERINC2|347735|serine incorporator 2##AK309409|SERINC2|347735|serine incorporator 2##AK308031|SERINC2|347735|serine incorporator 2##AY358560|SERINC2|347735|serine incorporator 2##BC063006|SERINC2|347735|serine incorporator 2##BC084580|SERINC2|347735|serine incorporator 2##BC126283|SERINC2|347735|serine incorporator 2##BC126285|SERINC2|347735|serine incorporator 2##GQ129287|SERINC2|347735|serine incorporator 2##GQ129288|SERINC2|347735|serine incorporator 2##HQ258415|SERINC2|347735|serine incorporator 2##NM_001199037|SERINC2|347735|serine incorporator 2##AK298512|SERINC2|347735|serine incorporator 2##NM_001204414|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##NM_022164|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK292770|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK075398|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK296322|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK298382|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AY358421|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##BC064633|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AB050716|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK298038|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AF236150|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AF205436|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1	0.164537	0.113943	
chr19	21205980	21206109	reg1011628.p1	4.413	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-2563	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-99958	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-246935	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	58959	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	118812	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	306149	-	AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708	0.0	0.0	
chr19	2394361	2394541	reg1003706.p1	4.413	+	AB109390 AB527446 AJ488946 AJ488947 NM_182973	-4676	+	TSC_hg19_v1_chr19_+_2328689 AJ345027 BC001788 BC028391	-65761	+	AB040965 AJ420897 TSC_hg19_v1_chr19_+_2328682 AY169315 AK308973	-65771	+	AF152352 DQ891755 DQ894937 TSC_hg19_v1_chr19_-_2427552 AK024764 AF144700 BC008607	33102	-	NM_012458 TSC_hg19_v1_chr19_-_2427893	33445	-	BT007441 EU832653 EU832731 TSC_hg19_v1_chr19_-_2456904	62439	-	AB109390|TMPRSS9|360200|transmembrane protease, serine 9##AJ488946|TMPRSS9|360200|transmembrane protease, serine 9##AJ488947|TMPRSS9|360200|transmembrane protease, serine 9##NM_182973|TMPRSS9|360200|transmembrane protease, serine 9##AJ345027|SPPL2B|56928|signal peptide peptidase-like 2B##BC001788|SPPL2B|56928|signal peptide peptidase-like 2B##BC028391|SPPL2B|56928|signal peptide peptidase-like 2B##AB040965|SPPL2B|56928|signal peptide peptidase-like 2B##AJ420897|SPPL2B|56928|signal peptide peptidase-like 2B##AY169315|SPPL2B|56928|signal peptide peptidase-like 2B##AF152352|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ891755|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##DQ894937|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AK024764|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##AF144700|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BC008607|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##NM_012458|TIMM13|26517|translocase of inner mitochondrial membrane 13 homolog (yeast)##BT007441|LMNB2|84823|lamin B2##EU832653|LMNB2|84823|lamin B2##EU832731|LMNB2|84823|lamin B2	0.946037	0.0	denovo_WM_7:-46:0.834
chr22	50223723	50223846	reg1012180.p1	4.413	+	TSC_hg19_v1_chr22_-_50221517 AK304776	-2303	-	AK292428 TSC_hg19_v1_chr22_-_50221332 BC030007 BC047508	-2518	-	AF005067 NM_014577	-5333	-	TSC_hg19_v1_chr22_+_50247506 NM_014838	23709	+	AB014537 BC167155 TSC_hg19_v1_chr22_+_50247533	23748	+	TSC_hg19_v1_chr22_-_50312087 BC001729 AJ290427 AJ303120 BC098562 AF318343	88231	-	AK304776|BRD1|23774|bromodomain containing 1##AK292428|BRD1|23774|bromodomain containing 1##BC030007|BRD1|23774|bromodomain containing 1##BC047508|BRD1|23774|bromodomain containing 1##AF005067|BRD1|23774|bromodomain containing 1##NM_014577|BRD1|23774|bromodomain containing 1##NM_014838|ZBED4|9889|zinc finger, BED-type containing 4##AB014537|ZBED4|9889|zinc finger, BED-type containing 4##BC167155|ZBED4|9889|zinc finger, BED-type containing 4##BC001729|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ290427|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ303120|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##BC098562|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AF318343|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)	0.0	0.0	
chr3	59222448	59222628	reg1005732.p2	4.413	+	BC050317 TSC_hg19_v1_chr3_-_59035759	-186778	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-186797	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	-186830	-	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	2014552	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	2324673	+	BC047734 TSC_hg19_v1_chr3_+_61547294	2324748	+	BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	1.640311	0.0	denovo_WM_7:28:0.634	denovo_WM_7:-77:0.940
chr7	28429394	28429574	reg1000599.p2	4.413	+	L05913 NM_182899	-90545	+	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	-209078	-	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	-209283	-	TSC_hg19_v1_chr7_+_28448986 BC087859	19504	+	L05515 NM_182898	22659	+	L05911 NM_004904	45749	+	L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##BC087859|LOC401317|401317|uncharacterized LOC401317##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5	0.0	0.0	
chr17	29649399	29649497	reg1002593.p3	4.412	+	TSC_hg19_v1_chr17_-_29648631 BC035572 AK295311 AK312348 NM_001003927 NM_014210	-750	-	TSC_hg19_v1_chr17_-_29641103 AK297087 NM_006495	-8337	-	TSC_hg19_v1_chr17_-_29641092 BC005926	-8359	-	AY169244 NM_032932 TSC_hg19_v1_chr17_+_29718692	69219	+	TSC_hg19_v1_chr17_+_29718794 BC093914 BC101517 AB058724 AJ314646	69416	+	TSC_hg19_v1_chr17_+_29815032 AK097424	165613	+	BC035572|EVI2A|2123|ecotropic viral integration site 2A##AK295311|EVI2A|2123|ecotropic viral integration site 2A##AK312348|EVI2A|2123|ecotropic viral integration site 2A##NM_001003927|EVI2A|2123|ecotropic viral integration site 2A##NM_014210|EVI2A|2123|ecotropic viral integration site 2A##AK297087|EVI2B|2124|ecotropic viral integration site 2B##NM_006495|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B##AY169244|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##NM_032932|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC093914|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##BC101517|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AB058724|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AJ314646|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)##AK097424|RAB11FIP4|84440|RAB11 family interacting protein 4 (class II)	1.997772	0.0	denovo_WM_7:79:0.275	denovo_WM_7:80:0.231
chr22	31873248	31873339	reg1005741.p1	4.412	+	TSC_hg19_v1_chr22_+_31795589 AK315659 BC019285 AJ005940 BC020803 AF078103 AK098576 CR456488 DQ890690 DQ893872 CU013048 CU013336 CU676724 AB463011 BT007237 CR542059	-77668	+	NM_004147 TSC_hg19_v1_chr22_+_31795576	-77736	+	TSC_hg19_v1_chr22_+_31742744 BC004550 CR456348 AK000471 CU013058 CU013346	-130463	+	BC033028 NM_001164501 TSC_hg19_v1_chr22_-_31885678 AF240775	12314	-	TSC_hg19_v1_chr22_-_31885761 BC012734	12451	-	TSC_hg19_v1_chr22_-_31885787 BC032941 AK314636 NM_001164502 NM_019843 DQ655937	12554	-	AK315659|DRG1|4733|developmentally regulated GTP binding protein 1##BC019285|DRG1|4733|developmentally regulated GTP binding protein 1##AJ005940|DRG1|4733|developmentally regulated GTP binding protein 1##BC020803|DRG1|4733|developmentally regulated GTP binding protein 1##AF078103|DRG1|4733|developmentally regulated GTP binding protein 1##AK098576|DRG1|4733|developmentally regulated GTP binding protein 1##CR456488|DRG1|4733|developmentally regulated GTP binding protein 1##DQ890690|DRG1|4733|developmentally regulated GTP binding protein 1##DQ893872|DRG1|4733|developmentally regulated GTP binding protein 1##CU013048|DRG1|4733|developmentally regulated GTP binding protein 1##CU013336|DRG1|4733|developmentally regulated GTP binding protein 1##BT007237|DRG1|4733|developmentally regulated GTP binding protein 1##CR542059|DRG1|4733|developmentally regulated GTP binding protein 1##NM_004147|DRG1|4733|developmentally regulated GTP binding protein 1##BC004550|FLJ20464|54944|uncharacterized protein FLJ20464##CR456348|FLJ20464|54944|uncharacterized protein FLJ20464##AK000471|FLJ20464|54944|uncharacterized protein FLJ20464##BC033028|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_001164501|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AF240775|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##BC012734|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##BC032941|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##AK314636|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_001164502|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##NM_019843|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1##DQ655937|EIF4ENIF1|56478|eukaryotic translation initiation factor 4E nuclear import factor 1	1.979483	0.0	denovo_WM_7:58:0.331	denovo_WM_7:59:0.331	denovo_WM_7:60:0.330	denovo_WM_7:76:0.448	denovo_WM_7:77:0.441
chr4	169110169	169110297	reg1011883.p2	4.412	+	NM_007193 BC007320 AF196478 AJ238979 CU675613 EU176730	-96464	+	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	-954493	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	-954529	-	TSC_hg19_v1_chr4_-_169239951 AK001649 BC038115 AK307404 NM_017631	129672	-	TSC_hg19_v1_chr4_-_169401573 AK096369	291347	-	TSC_hg19_v1_chr4_-_169401630 CR933601 NM_001012967	291387	-	NM_007193|ANXA10|11199|annexin A10##BC007320|ANXA10|11199|annexin A10##AF196478|ANXA10|11199|annexin A10##AJ238979|ANXA10|11199|annexin A10##EU176730|ANXA10|11199|annexin A10##AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK001649|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##BC038115|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##AK307404|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##NM_017631|DDX60|55601|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60##AK096369|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##CR933601|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001012967|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	0.286904	0.0	
chr8	125663626	125663730	reg1012411.p1	4.412	+	AF116674 TSC_hg19_v1_chr8_-_125580771	-82917	-	TSC_hg19_v1_chr8_-_125579395 AK126989	-84272	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	-112294	+	TSC_hg19_v1_chr8_-_125716430 U50573	52754	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	76767	-	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	77045	-	AF116674|MTSS1|9788|metastasis suppressor 1##AK126989|MTSS1|9788|metastasis suppressor 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##U50573|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1	0.563443	0.0	denovo_WM_7:16:0.528
chr14	67832255	67832383	reg1011154.p1	4.411	+	AB587562 DQ892151 DQ895347 TSC_hg19_v1_chr14_+_67831578	-788	+	TSC_hg19_v1_chr14_+_67827105 J02645	-5202	+	TSC_hg19_v1_chr14_+_67827077 BC002513	-5239	+	BC008056 AB528314 DQ891238 DQ894423 TSC_hg19_v1_chr14_-_67878843 AF228603 NM_016445	46492	-	TSC_hg19_v1_chr14_-_67878872 BC001226	46552	-	NM_182526 TSC_hg19_v1_chr14_-_67982162 AK090706 AX746582	149791	-	DQ892151|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##DQ895347|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##J02645|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BC002513|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BC008056|PLEK2|26499|pleckstrin 2##DQ891238|PLEK2|26499|pleckstrin 2##DQ894423|PLEK2|26499|pleckstrin 2##AF228603|PLEK2|26499|pleckstrin 2##NM_016445|PLEK2|26499|pleckstrin 2##BC001226|PLEK2|26499|pleckstrin 2##NM_182526|TMEM229B|161145|transmembrane protein 229B##AK090706|TMEM229B|161145|transmembrane protein 229B	0.0	0.0	
chr3	52925658	52925784	reg1012368.p1	4.411	+	NM_205853	-56487	-	AK298407 AK298412 AK298429 D38595 BC136392 BC136393 TSC_hg19_v1_chr3_-_52864689 AK303769 NM_001166449 NM_002218	-61020	-	NM_002217 TSC_hg19_v1_chr3_+_52828811 X67055 AK222757 AK298450 BC107604 BC107605 BC107814	-96922	+	TSC_hg19_v1_chr3_-_52931547 AY726591 BC047015	5728	-	TSC_hg19_v1_chr3_-_52931595 NM_001198974 NM_198563	5936	-	TSC_hg19_v1_chr3_-_53079286 NM_001005159	153588	-	NM_205853|MUSTN1|389125|musculoskeletal, embryonic nuclear protein 1##AK298407|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK298412|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK298429|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##D38595|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##BC136392|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##BC136393|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK303769|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_001166449|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_002218|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_002217|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##X67055|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AK222757|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AK298450|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107604|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107605|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107814|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AY726591|TMEM110|375346|transmembrane protein 110##BC047015|TMEM110|375346|transmembrane protein 110##NM_001198974|TMEM110-MUSTN1|100526772|TMEM110-MUSTN1 readthrough##NM_198563|TMEM110|375346|transmembrane protein 110##NM_001005159|SFMBT1|51460|Scm-like with four mbt domains 1	0.986225	0.0	denovo_WM_7:-21:0.972
chr6	499779	499929	reg1011379.p1	4.411	+	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	-108090	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-207357	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-207769	+	AF508547 BC101697 BC101699 NM_148959	157099	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	193236	-	BC053850 NM_033260	812820	+	NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2##BC053850|FOXQ1|94234|forkhead box Q1##NM_033260|FOXQ1|94234|forkhead box Q1	1.104218	0.0	denovo_WM_7:26:0.308	denovo_WM_7:27:0.637
chr7	23301548	23301706	reg1013651.p1	4.411	+	AF322909 TSC_hg19_v1_chr7_+_23286426 BC025297 BC011595 CU679974 CU689536 AB528457 DQ892084 DQ895277 BT007074	-15179	+	TSC_hg19_v1_chr7_+_23286407 AJ505015	-15222	+	TSC_hg19_v1_chr7_+_23286393 AK292078 AK296779 AK297031 AK297803 AY359124 BC032783	-15233	+	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	37338	+	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	208052	-	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	208371	-	AF322909|GPNMB|10457|glycoprotein (transmembrane) nmb##BC025297|GPNMB|10457|glycoprotein (transmembrane) nmb##BC011595|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ892084|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ895277|GPNMB|10457|glycoprotein (transmembrane) nmb##BT007074|GPNMB|10457|glycoprotein (transmembrane) nmb##AJ505015|GPNMB|10457|glycoprotein (transmembrane) nmb##AK292078|GPNMB|10457|glycoprotein (transmembrane) nmb##AK296779|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297031|GPNMB|10457|glycoprotein (transmembrane) nmb##AK297803|GPNMB|10457|glycoprotein (transmembrane) nmb##AY359124|GPNMB|10457|glycoprotein (transmembrane) nmb##BC032783|GPNMB|10457|glycoprotein (transmembrane) nmb##BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3	0.0	0.967291	CTCF.p2:27:0.967
chr9	6015631	6015811	reg1013887.p2	4.411	+	AF039023 AK300408 BC098406 TSC_hg19_v1_chr9_-_6015616 AK307840 BX537405 NM_001243202 NM_001243203 NM_012416	-90	-	TSC_hg19_v1_chr9_-_6007953 NM_001017969	-7757	-	BC108654 TSC_hg19_v1_chr9_-_5968443	-47313	-	NM_001199640 NM_001199641 NM_033439 AK295908 AK313414 TSC_hg19_v1_chr9_+_6215806 AK303943 BC047085	200075	+	NM_001001874 NM_001001875 NM_033516 AK057479 AY032877 BC017589 BC042113 BC033792	312654	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	397423	+	AF039023|RANBP6|26953|RAN binding protein 6##AK300408|RANBP6|26953|RAN binding protein 6##BC098406|RANBP6|26953|RAN binding protein 6##BX537405|RANBP6|26953|RAN binding protein 6##NM_001243202|RANBP6|26953|RAN binding protein 6##NM_001243203|RANBP6|26953|RAN binding protein 6##NM_012416|RANBP6|26953|RAN binding protein 6##NM_001017969|KIAA2026|158358|KIAA2026##NM_001199640|IL33|90865|interleukin 33##NM_001199641|IL33|90865|interleukin 33##NM_033439|IL33|90865|interleukin 33##AK295908|IL33|90865|interleukin 33##AK313414|IL33|90865|interleukin 33##AK303943|IL33|90865|interleukin 33##BC047085|IL33|90865|interleukin 33##NM_001001874|TPD52L3|89882|tumor protein D52-like 3##NM_001001875|TPD52L3|89882|tumor protein D52-like 3##NM_033516|TPD52L3|89882|tumor protein D52-like 3##AK057479|TPD52L3|89882|tumor protein D52-like 3##AY032877|TPD52L3|89882|tumor protein D52-like 3##BC017589|TPD52L3|89882|tumor protein D52-like 3##BC042113|TPD52L3|89882|tumor protein D52-like 3##BC033792|TPD52L3|89882|tumor protein D52-like 3##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2	0.0	0.0	
chr10	72309800	72309980	reg1007588.p2	4.410	+	TSC_hg19_v1_chr10_+_72238575 NM_014431 AB033100 BC136375 BC136376	-71275	+	TSC_hg19_v1_chr10_-_72201438 BC104976 NM_018055 BC112025	-108439	-	BC033585 TSC_hg19_v1_chr10_-_72201372	-108524	-	BC047695 TSC_hg19_v1_chr10_-_72362497 AK312754	52579	-	BC063043 TSC_hg19_v1_chr10_-_72362518 FJ555237 NM_001083116 NM_005041	52636	-	AB462932 AF358666 AJ345098 NM_080722 NM_139155	122667	+	NM_014431|KIAA1274|27143|KIAA1274##AB033100|KIAA1274|27143|KIAA1274##BC136375|KIAA1274|27143|KIAA1274##BC136376|KIAA1274|27143|KIAA1274##BC104976|NODAL|4838|nodal homolog (mouse)##NM_018055|NODAL|4838|nodal homolog (mouse)##BC112025|NODAL|4838|nodal homolog (mouse)##BC033585|NODAL|4838|nodal homolog (mouse)##BC047695|PRF1|5551|perforin 1 (pore forming protein)##AK312754|PRF1|5551|perforin 1 (pore forming protein)##BC063043|PRF1|5551|perforin 1 (pore forming protein)##FJ555237|PRF1|5551|perforin 1 (pore forming protein)##NM_001083116|PRF1|5551|perforin 1 (pore forming protein)##NM_005041|PRF1|5551|perforin 1 (pore forming protein)##AF358666|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##AJ345098|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_080722|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_139155|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14	0.0	0.997038	CTCF.p2:-86:0.997
chr13	79976134	79976314	reg1007711.p1	4.410	+	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	-742931	-	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	-798501	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	-805942	+	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	3730	-	BC030806 TSC_hg19_v1_chr13_-_79980382	4159	-	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	4227	+	AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##BC030806|RBM26|64062|RNA binding motif protein 26##AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)	1.925962	0.0	denovo_WM_7:9:0.655	denovo_WM_7:-55:0.783
chr19	33061100	33061206	reg1006805.p1	4.410	+	NM_207325 TSC_hg19_v1_chr19_+_32897021 AK126757 AF533710	-164096	+	TSC_hg19_v1_chr19_+_32896675 NM_001172774 AK129497 AF533711 BC029162	-164540	+	TSC_hg19_v1_chr19_-_32896476 BC000922	-164661	-	TSC_hg19_v1_chr19_+_33072095 NM_004708 AK293486 AB209040 BC015519 AF014955 DQ208400 AB590247 DQ893577 DQ894611 BT006694 CR456934	10974	+	BC050529 TSC_hg19_v1_chr19_-_33166076 AF447882 AL136784 AK054561 BC045605 NM_032139	104934	-	AK124499 NM_207391	105159	+	NM_207325|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AK126757|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AF533710|DPY19L3|147991|dpy-19-like 3 (C. elegans)##NM_001172774|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AK129497|DPY19L3|147991|dpy-19-like 3 (C. elegans)##AF533711|DPY19L3|147991|dpy-19-like 3 (C. elegans)##BC029162|DPY19L3|147991|dpy-19-like 3 (C. elegans)##BC000922|LOC400684|400684|uncharacterized LOC400684##NM_004708|PDCD5|9141|programmed cell death 5##AK293486|PDCD5|9141|programmed cell death 5##AB209040|PDCD5|9141|programmed cell death 5##BC015519|PDCD5|9141|programmed cell death 5##AF014955|PDCD5|9141|programmed cell death 5##DQ208400|PDCD5|9141|programmed cell death 5##DQ893577|PDCD5|9141|programmed cell death 5##DQ894611|PDCD5|9141|programmed cell death 5##BT006694|PDCD5|9141|programmed cell death 5##CR456934|PDCD5|9141|programmed cell death 5##BC050529|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AF447882|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AL136784|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AK054561|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##BC045605|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##NM_032139|ANKRD27|84079|ankyrin repeat domain 27 (VPS9 domain)##AK124499|RGS9BP|388531|regulator of G protein signaling 9 binding protein##NM_207391|RGS9BP|388531|regulator of G protein signaling 9 binding protein	1.878419	0.0	denovo_WM_7:54:0.675	denovo_WM_7:80:0.626
chr2	37309097	37309203	reg1010232.p1	4.410	+	TSC_hg19_v1_chr2_-_37297372 BX538008	-11706	-	AB590635 BC106879 AJ223814 BC106878 NM_003162 TSC_hg19_v1_chr2_-_37193662	-115515	-	TSC_hg19_v1_chr2_-_37076016 BC015406	-233120	-	TSC_hg19_v1_chr2_-_37311425 AK096637	2272	-	TSC_hg19_v1_chr2_-_37311470 BC150605 NM_019024 AK093937 AX748373	2342	-	NM_174931 TSC_hg19_v1_chr2_+_37311662 AK095667 BC071798 AK289504 AK294697	2497	+	BX538008|HEATR5B|54497|HEAT repeat containing 5B##BC106879|STRN|6801|striatin, calmodulin binding protein##AJ223814|STRN|6801|striatin, calmodulin binding protein##BC106878|STRN|6801|striatin, calmodulin binding protein##NM_003162|STRN|6801|striatin, calmodulin binding protein##BC015406|STRN|6801|striatin, calmodulin binding protein##AK096637|HEATR5B|54497|HEAT repeat containing 5B##BC150605|HEATR5B|54497|HEAT repeat containing 5B##NM_019024|HEATR5B|54497|HEAT repeat containing 5B##NM_174931|CCDC75|253635|coiled-coil domain containing 75##AK095667|CCDC75|253635|coiled-coil domain containing 75##BC071798|CCDC75|253635|coiled-coil domain containing 75##AK289504|CCDC75|253635|coiled-coil domain containing 75##AK294697|CCDC75|253635|coiled-coil domain containing 75	1.993506	0.0	denovo_WM_7:53:0.306	denovo_WM_7:54:0.246	denovo_WM_7:71:0.252	denovo_WM_7:72:0.313
chr9	129605749	129605911	reg1011652.p1	4.410	+	TSC_hg19_v1_chr9_+_129567318 NM_001135776 NM_014007 AF049907 AK026123 BC008828	-38520	+	NM_001174146 NM_001174147 NM_002316 AB587444 BC112120 BC113491 BC143801 AF057135 BC069601 CU686928 HQ258228 BC069588	-229069	+	TSC_hg19_v1_chr9_+_129089122 NM_001011703 NM_033446 AK024432 BC028675 BC000122 CU688540	-516663	+	TSC_hg19_v1_chr9_+_129622936 AB082524 NM_001099270	17114	+	TSC_hg19_v1_chr9_+_129677073 AB002349 NM_001190729 NM_001190730 NM_014636 BC033708 BC019329 AK299149 BC032372	71274	+	AF221098 NM_001190728 AB385313 CU689706	118705	+	NM_001135776|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_014007|ZBTB43|23099|zinc finger and BTB domain containing 43##AF049907|ZBTB43|23099|zinc finger and BTB domain containing 43##AK026123|ZBTB43|23099|zinc finger and BTB domain containing 43##BC008828|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_001174146|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001174147|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_002316|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC112120|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC113491|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC143801|LMX1B|4010|LIM homeobox transcription factor 1, beta##AF057135|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069601|LMX1B|4010|LIM homeobox transcription factor 1, beta##HQ258228|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069588|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001011703|FAM125B|89853|family with sequence similarity 125, member B##NM_033446|FAM125B|89853|family with sequence similarity 125, member B##AK024432|FAM125B|89853|family with sequence similarity 125, member B##BC028675|FAM125B|89853|family with sequence similarity 125, member B##BC000122|FAM125B|89853|family with sequence similarity 125, member B##AB082524|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001099270|ZBTB34|403341|zinc finger and BTB domain containing 34##AB002349|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190729|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190730|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_014636|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC033708|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC019329|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK299149|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC032372|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AF221098|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190728|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1	0.994616	0.0	denovo_WM_7:12:0.239	denovo_WM_7:13:0.239	denovo_WM_7:14:0.239	denovo_WM_7:15:0.239
chr17	64702734	64702855	reg1013720.p2	4.409	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-403867	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-404044	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-477269	-	AK290171 TSC_hg19_v1_chr17_+_64831234	128441	+	BC101633 NM_145811 BC101607 AF361351 AF458898	170626	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	258095	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.996668	0.0	denovo_WM_7:-31:0.826
chr21	47935862	47935956	reg1000904.p3	4.409	+	AK056738 TSC_hg19_v1_chr21_+_47878972 AB273729	-56913	+	TSC_hg19_v1_chr21_+_47878854 AK303351 NM_001146114 NM_001146115 NM_001146116 NM_015151 NM_206889 NM_206890 NM_206891 BC038443 BC033718 AF490768	-57047	+	TSC_hg19_v1_chr21_-_47878602 AK127572	-57308	-	BC001766 TSC_hg19_v1_chr21_-_48024996 BC041935 CS301701 CS301702 NM_006272	89100	-	TSC_hg19_v1_chr21_+_48055078 AK123650	119168	+	NM_001242864 NM_001242865 NM_001242866 NM_001535 NM_206962 TSC_hg19_v1_chr21_+_48055572 AK123352 AY786414 FJ436410 FJ436411 FJ436412 U79286 X99209 U80213 AK312573 AL833586	119634	+	AK056738|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AB273729|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AK303351|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146114|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146115|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146116|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_015151|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206889|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206890|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206891|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC038443|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC033718|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AF490768|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC001766|S100B|6285|S100 calcium binding protein B##BC041935|S100B|6285|S100 calcium binding protein B##NM_006272|S100B|6285|S100 calcium binding protein B##AK123650|PRMT2|3275|protein arginine methyltransferase 2##NM_001242864|PRMT2|3275|protein arginine methyltransferase 2##NM_001242865|PRMT2|3275|protein arginine methyltransferase 2##NM_001242866|PRMT2|3275|protein arginine methyltransferase 2##NM_001535|PRMT2|3275|protein arginine methyltransferase 2##NM_206962|PRMT2|3275|protein arginine methyltransferase 2##AK123352|PRMT2|3275|protein arginine methyltransferase 2##AY786414|PRMT2|3275|protein arginine methyltransferase 2##FJ436410|PRMT2|3275|protein arginine methyltransferase 2##FJ436411|PRMT2|3275|protein arginine methyltransferase 2##FJ436412|PRMT2|3275|protein arginine methyltransferase 2##U79286|PRMT2|3275|protein arginine methyltransferase 2##X99209|PRMT2|3275|protein arginine methyltransferase 2##U80213|PRMT2|3275|protein arginine methyltransferase 2##AK312573|PRMT2|3275|protein arginine methyltransferase 2##AL833586|PRMT2|3275|protein arginine methyltransferase 2	0.0	0.0	
chr3	152094539	152094689	reg1007800.p1	4.409	+	AY358260 NM_001123228	-35836	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-77421	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-107269	-	NM_002563 Z49205	458121	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	785412	+	TSC_hg19_v1_chr3_+_152880058 BC012362	785434	+	AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family	0.0	0.0	
chr7	2934462	2934642	reg1010765.p1	4.409	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-50744	-	AK289723 AB075830 BC146753 NM_133463	-215394	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-262849	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	148910	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	406447	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1787286	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	0.0	0.0	
chr9	34023245	34023356	reg1014640.p1	4.409	+	TSC_hg19_v1_chr9_+_33817704 AJ240087 CR457233	-205628	+	TSC_hg19_v1_chr9_+_33817325 BC047584 AK000426 BC004862 AK225880	-205906	+	TSC_hg19_v1_chr9_+_33817170 NM_017811	-206116	+	AB209911 TSC_hg19_v1_chr9_-_34048886 AK302754 AK294952 AK299183 AK303493 CR933678	25577	-	TSC_hg19_v1_chr9_-_34048895 BC111409 AK302335 NM_018449	25616	-	AK000354 AK292935 TSC_hg19_v1_chr9_-_34126623	103286	-	AJ240087|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##CR457233|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC047584|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK000426|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##BC004862|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AK225880|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##NM_017811|UBE2R2|54926|ubiquitin-conjugating enzyme E2R 2##AB209911|UBAP2|55833|ubiquitin associated protein 2##AK302754|UBAP2|55833|ubiquitin associated protein 2##AK294952|UBAP2|55833|ubiquitin associated protein 2##AK299183|UBAP2|55833|ubiquitin associated protein 2##AK303493|UBAP2|55833|ubiquitin associated protein 2##CR933678|UBAP2|55833|ubiquitin associated protein 2##BC111409|UBAP2|55833|ubiquitin associated protein 2##AK302335|UBAP2|55833|ubiquitin associated protein 2##NM_018449|UBAP2|55833|ubiquitin associated protein 2##AK000354|DCAF12|25853|DDB1 and CUL4 associated factor 12##AK292935|DCAF12|25853|DDB1 and CUL4 associated factor 12	0.986103	0.969483	CTCF.p2:-7:0.969	denovo_WM_7:-74:0.807
chr3	12704135	12704315	reg1001842.p2	4.408	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-105645	+	NM_001195279	-117263	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-177989	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	1242	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	1390	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	1449	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.0	0.0	
chr4	26874991	26875138	reg1011569.p1	4.408	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-12524	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-289384	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-383079	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	3846935	+	AB006757 TSC_hg19_v1_chr4_+_30722198	3847130	+	TSC_hg19_v1_chr4_+_30722465 AB006756	3847395	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.999147	0.0	denovo_WM_7:-33:0.739
chr6	150489671	150489787	reg1013038.p1	4.408	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-25488	+	AY027538 AF346596 AB052908 AB590715 AF304379 BC098127 NM_024518 AK297815 AK302076	-99516	-	BC131600 AB528849 AY039682 NM_130900	-143096	-	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	200429	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	431291	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	697103	+	NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AY027538|ULBP3|79465|UL16 binding protein 3##AF346596|ULBP3|79465|UL16 binding protein 3##AB052908|ULBP3|79465|UL16 binding protein 3##AF304379|ULBP3|79465|UL16 binding protein 3##BC098127|ULBP3|79465|UL16 binding protein 3##NM_024518|ULBP3|79465|UL16 binding protein 3##AK297815|ULBP3|79465|UL16 binding protein 3##AK302076|ULBP3|79465|UL16 binding protein 3##BC131600|RAET1L|154064|retinoic acid early transcript 1L##AY039682|RAET1L|154064|retinoic acid early transcript 1L##NM_130900|RAET1L|154064|retinoic acid early transcript 1L##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.76743	0.0	denovo_WM_7:-32:0.204	denovo_WM_7:-33:0.469
chr1	87668729	87668853	reg1011719.p1	4.407	+	TSC_hg19_v1_chr1_+_87595568 BC030523	-73242	+	AB007917 TSC_hg19_v1_chr1_+_87380462	-288334	+	TSC_hg19_v1_chr1_+_87380374 BC025384 BC025990 NM_001134492 NM_012262 AK023260 AB024568 BC108735	-288438	+	NM_006769 U24576 TSC_hg19_v1_chr1_+_87794164	125366	+	AK292578 TSC_hg19_v1_chr1_+_87794564	125768	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	125890	+	BC030523|LOC339524|339524|uncharacterized LOC339524##AB007917|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC025384|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC025990|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_001134492|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_012262|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##AK023260|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##AB024568|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##BC108735|HS2ST1|9653|heparan sulfate 2-O-sulfotransferase 1##NM_006769|LMO4|8543|LIM domain only 4##U24576|LMO4|8543|LIM domain only 4##AK292578|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4	0.0	0.0	
chr5	152204029	152204141	reg1009000.p1	4.407	+	AF242874 AB041228 AF292402 CU677771 CU688334 DQ891777 DQ894961 AF272363 BC016938 BC067776 NM_020167	-419334	-	AK312702 AK308539 AK226046 BC114947 BC114967 NM_000171 NM_001146040 X52009	-899723	-	TSC_hg19_v1_chr5_+_151151662 X78262	-1052421	+	NM_000827 NM_001114183 TSC_hg19_v1_chr5_+_152870105 AK289565 AK295827 AB209094 AK294011 M81886 X58633 BC111734 M64752 AB527859 AB590570	666180	+	TSC_hg19_v1_chr5_-_153418471 AF159700 BC011414 BC050701 AK024664 AK298943 AK095446 AK303865 AK313331 AK225821 NM_018691	1214372	-	AK296468 NM_001135037 NM_001242336 NM_005927 TSC_hg19_v1_chr5_+_153418526	1214439	+	AF242874|NMUR2|56923|neuromedin U receptor 2##AB041228|NMUR2|56923|neuromedin U receptor 2##AF292402|NMUR2|56923|neuromedin U receptor 2##DQ891777|NMUR2|56923|neuromedin U receptor 2##DQ894961|NMUR2|56923|neuromedin U receptor 2##AF272363|NMUR2|56923|neuromedin U receptor 2##BC016938|NMUR2|56923|neuromedin U receptor 2##BC067776|NMUR2|56923|neuromedin U receptor 2##NM_020167|NMUR2|56923|neuromedin U receptor 2##AK312702|GLRA1|2741|glycine receptor, alpha 1##AK308539|GLRA1|2741|glycine receptor, alpha 1##AK226046|GLRA1|2741|glycine receptor, alpha 1##BC114947|GLRA1|2741|glycine receptor, alpha 1##BC114967|GLRA1|2741|glycine receptor, alpha 1##NM_000171|GLRA1|2741|glycine receptor, alpha 1##NM_001146040|GLRA1|2741|glycine receptor, alpha 1##X52009|GLRA1|2741|glycine receptor, alpha 1##X78262|G3BP1|10146|GTPase activating protein (SH3 domain) binding protein 1##NM_000827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##NM_001114183|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK289565|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK295827|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AB209094|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AK294011|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M81886|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##X58633|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##BC111734|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##M64752|GRIA1|2890|glutamate receptor, ionotropic, AMPA 1##AF159700|FAM114A2|10827|family with sequence similarity 114, member A2##BC011414|FAM114A2|10827|family with sequence similarity 114, member A2##BC050701|FAM114A2|10827|family with sequence similarity 114, member A2##AK024664|FAM114A2|10827|family with sequence similarity 114, member A2##AK298943|FAM114A2|10827|family with sequence similarity 114, member A2##AK095446|FAM114A2|10827|family with sequence similarity 114, member A2##AK303865|FAM114A2|10827|family with sequence similarity 114, member A2##AK313331|FAM114A2|10827|family with sequence similarity 114, member A2##AK225821|FAM114A2|10827|family with sequence similarity 114, member A2##NM_018691|FAM114A2|10827|family with sequence similarity 114, member A2##AK296468|MFAP3|4238|microfibrillar-associated protein 3##NM_001135037|MFAP3|4238|microfibrillar-associated protein 3##NM_001242336|MFAP3|4238|microfibrillar-associated protein 3##NM_005927|MFAP3|4238|microfibrillar-associated protein 3	0.997543	0.0	denovo_WM_7:32:0.493	denovo_WM_7:33:0.493
chrX	7955641	7955804	reg1014836.p2	4.407	+	AK304586 TSC_hg19_v1_chrX_-_7895766 NM_001142389 NM_001172672	-59951	-	AK289888 U03886 NM_004650 BC020746	-60272	-	AF167081 NM_013452	-145420	+	AF167079 NM_016378	183585	-	AF167078 AF167080 NM_001001888	477148	+	X60299 TSC_hg19_v1_chrX_-_8700155	744421	-	AK304586|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001142389|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001172672|PNPLA4|8228|patatin-like phospholipase domain containing 4##AK289888|PNPLA4|8228|patatin-like phospholipase domain containing 4##U03886|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_004650|PNPLA4|8228|patatin-like phospholipase domain containing 4##BC020746|PNPLA4|8228|patatin-like phospholipase domain containing 4##AF167081|VCX|26609|variable charge, X-linked##NM_013452|VCX|26609|variable charge, X-linked##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016378|VCX2|51480|variable charge, X-linked 2##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167080|VCX3B|425054|variable charge, X-linked 3B##NM_001001888|VCX3B|425054|variable charge, X-linked 3B##X60299|KAL1|3730|Kallmann syndrome 1 sequence	0.652368	0.0	denovo_WM_7:-28:0.411
chr16	87961453	87961548	reg1014647.p2	4.406	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	-58425	-	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-161930	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-161985	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	8647	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	23668	+	AK315535 NM_001173542	31976	+	DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein##AK315535|BANP|54971|BTG3 associated nuclear protein##NM_001173542|BANP|54971|BTG3 associated nuclear protein	1.64764	0.152694	denovo_WM_7:101:0.479
chr3	49415010	49415167	reg1013006.p1	4.406	+	TSC_hg19_v1_chr3_-_49399989 BC000946	-15074	-	M21304 TSC_hg19_v1_chr3_-_49395760 AK130160 D28370 NM_000581 NM_201397	-19318	-	TSC_hg19_v1_chr3_-_49395733 X13709 X13710 AK225835 BC007865 BC070258 BC000742	-19373	-	TSC_hg19_v1_chr3_-_49449366 BC001360 BC005976	34273	-	TSC_hg19_v1_chr3_-_49449397 L25080	34308	-	TSC_hg19_v1_chr3_-_49449402 X05026 AK130808 AK296654	34315	-	BC000946|RHOA|387|ras homolog gene family, member A##M21304|GPX1|2876|glutathione peroxidase 1##AK130160|GPX1|2876|glutathione peroxidase 1##NM_000581|GPX1|2876|glutathione peroxidase 1##NM_201397|GPX1|2876|glutathione peroxidase 1##X13709|GPX1|2876|glutathione peroxidase 1##X13710|GPX1|2876|glutathione peroxidase 1##AK225835|GPX1|2876|glutathione peroxidase 1##BC007865|GPX1|2876|glutathione peroxidase 1##BC070258|GPX1|2876|glutathione peroxidase 1##BC000742|GPX1|2876|glutathione peroxidase 1##BC001360|RHOA|387|ras homolog gene family, member A##BC005976|RHOA|387|ras homolog gene family, member A##L25080|RHOA|387|ras homolog gene family, member A##X05026|RHOA|387|ras homolog gene family, member A##AK130808|RHOA|387|ras homolog gene family, member A##AK296654|RHOA|387|ras homolog gene family, member A	0.997616	0.0	denovo_WM_7:-39:0.607
chr8	24155639	24155771	reg1011068.p2	4.406	+	NM_014265 NM_021777 AK225921 AK293382 AK303437 AJ242015 AF137334 AF137335 BC136478 BC144140	-4098	+	BC029044 AK297734 AK312589 NM_003155 U25997 TSC_hg19_v1_chr8_-_23712320	-443394	-	AB464642 NM_001136271	-591595	-	NM_001145271 NM_001145272 NM_014479 AK316320 BC069582 Y13323 AK301007 BC074877 BC074878 CU686914 AK300959 AK311528 AK316322	86202	+	BC058037 AK292492 NM_003817 AF215824 CU691292 AB527100	142826	+	TSC_hg19_v1_chr8_+_24771273 AK296226 BC071752 EF560736 NM_005382	615566	+	NM_014265|ADAM28|10863|ADAM metallopeptidase domain 28##NM_021777|ADAM28|10863|ADAM metallopeptidase domain 28##AK225921|ADAM28|10863|ADAM metallopeptidase domain 28##AK293382|ADAM28|10863|ADAM metallopeptidase domain 28##AK303437|ADAM28|10863|ADAM metallopeptidase domain 28##AJ242015|ADAM28|10863|ADAM metallopeptidase domain 28##AF137334|ADAM28|10863|ADAM metallopeptidase domain 28##AF137335|ADAM28|10863|ADAM metallopeptidase domain 28##BC136478|ADAM28|10863|ADAM metallopeptidase domain 28##BC144140|ADAM28|10863|ADAM metallopeptidase domain 28##BC029044|STC1|6781|stanniocalcin 1##AK297734|STC1|6781|stanniocalcin 1##AK312589|STC1|6781|stanniocalcin 1##NM_003155|STC1|6781|stanniocalcin 1##U25997|STC1|6781|stanniocalcin 1##AB464642|NKX2-6|137814|NK2 homeobox 6##NM_001136271|NKX2-6|137814|NK2 homeobox 6##NM_001145271|ADAMDEC1|27299|ADAM-like, decysin 1##NM_001145272|ADAMDEC1|27299|ADAM-like, decysin 1##NM_014479|ADAMDEC1|27299|ADAM-like, decysin 1##AK316320|ADAMDEC1|27299|ADAM-like, decysin 1##BC069582|ADAMDEC1|27299|ADAM-like, decysin 1##Y13323|ADAMDEC1|27299|ADAM-like, decysin 1##AK301007|ADAMDEC1|27299|ADAM-like, decysin 1##BC074877|ADAMDEC1|27299|ADAM-like, decysin 1##BC074878|ADAMDEC1|27299|ADAM-like, decysin 1##AK300959|ADAMDEC1|27299|ADAM-like, decysin 1##AK311528|ADAMDEC1|27299|ADAM-like, decysin 1##AK316322|ADAMDEC1|27299|ADAM-like, decysin 1##BC058037|ADAM7|8756|ADAM metallopeptidase domain 7##AK292492|ADAM7|8756|ADAM metallopeptidase domain 7##NM_003817|ADAM7|8756|ADAM metallopeptidase domain 7##AF215824|ADAM7|8756|ADAM metallopeptidase domain 7##AK296226|NEFM|4741|neurofilament, medium polypeptide##BC071752|NEFM|4741|neurofilament, medium polypeptide##EF560736|NEFM|4741|neurofilament, medium polypeptide##NM_005382|NEFM|4741|neurofilament, medium polypeptide	0.371253	0.0	
chr8	54771419	54771558	reg1011611.p1	4.406	+	AY046538 NM_170587 AF366054 AF366055 AF366056	-7075	+	AF113222 TSC_hg19_v1_chr8_-_54755840 NM_015941 NM_213619 AK303229	-15636	-	AK022345 TSC_hg19_v1_chr8_-_54755834	-15661	-	TSC_hg19_v1_chr8_+_54793431 AK094503 BC063490 NM_003702 BC054867 BC018618 BC031328	21964	+	TSC_hg19_v1_chr8_+_54793579 AF060877 HQ257937 BC015614	22074	+	BT019995 CR542221 AB464783 AK290454 TSC_hg19_v1_chr8_-_54934848 X62585 BC072460 X57198 AK026617 AK297957 BX538034 AK297729	163279	-	AY046538|RGS20|8601|regulator of G-protein signaling 20##NM_170587|RGS20|8601|regulator of G-protein signaling 20##AF366054|RGS20|8601|regulator of G-protein signaling 20##AF366055|RGS20|8601|regulator of G-protein signaling 20##AF366056|RGS20|8601|regulator of G-protein signaling 20##AF113222|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_015941|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213619|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK303229|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK022345|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK094503|RGS20|8601|regulator of G-protein signaling 20##BC063490|RGS20|8601|regulator of G-protein signaling 20##NM_003702|RGS20|8601|regulator of G-protein signaling 20##BC018618|RGS20|8601|regulator of G-protein signaling 20##BC031328|RGS20|8601|regulator of G-protein signaling 20##AF060877|RGS20|8601|regulator of G-protein signaling 20##HQ257937|RGS20|8601|regulator of G-protein signaling 20##BC015614|RGS20|8601|regulator of G-protein signaling 20##BT019995|TCEA1|6917|transcription elongation factor A (SII), 1##CR542221|TCEA1|6917|transcription elongation factor A (SII), 1##AK290454|TCEA1|6917|transcription elongation factor A (SII), 1##X62585|TCEA1|6917|transcription elongation factor A (SII), 1##BC072460|TCEA1|6917|transcription elongation factor A (SII), 1##X57198|TCEA1|6917|transcription elongation factor A (SII), 1##AK026617|TCEA1|6917|transcription elongation factor A (SII), 1##AK297957|TCEA1|6917|transcription elongation factor A (SII), 1##BX538034|TCEA1|6917|transcription elongation factor A (SII), 1##AK297729|TCEA1|6917|transcription elongation factor A (SII), 1	0.997924	0.0	
chr2	242640603	242640783	reg1011761.p2	4.405	+	AB593140 TSC_hg19_v1_chr2_+_242626482	-14217	+	TSC_hg19_v1_chr2_-_242626231 AK223434 BC147006 BC147010 BC171894 BC171902 BC171903 NM_001165031 NM_012145	-14390	-	CR541986 CR542015 TSC_hg19_v1_chr2_-_242626210 X54729 BC001827	-14483	-	TSC_hg19_v1_chr2_+_242641311 AK289958 AK074422 NM_032329 AK300790 BC005370 BC071899 AF189286 AB527747 CU675145 CU687190 EU832330 EU832415	702	+	TSC_hg19_v1_chr2_+_242674044 AK304764 AK094149 BC071598 NM_152783 AK091725 AK304773 AX747146 BC036604	33348	+	AB040610 NM_022134 BC117293 BC117295	75587	+	AK223434|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##BC147006|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##BC147010|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##BC171894|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##BC171902|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##BC171903|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##NM_001165031|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##NM_012145|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##CR541986|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##CR542015|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##X54729|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##BC001827|DTYMK|1841|deoxythymidylate kinase (thymidylate kinase)##AK289958|ING5|84289|inhibitor of growth family, member 5##AK074422|ING5|84289|inhibitor of growth family, member 5##NM_032329|ING5|84289|inhibitor of growth family, member 5##BC005370|ING5|84289|inhibitor of growth family, member 5##BC071899|ING5|84289|inhibitor of growth family, member 5##AF189286|ING5|84289|inhibitor of growth family, member 5##AK304764|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##AK094149|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##BC071598|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##NM_152783|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##AK091725|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##AK304773|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##BC036604|D2HGDH|728294|D-2-hydroxyglutarate dehydrogenase##AB040610|GAL3ST2|64090|galactose-3-O-sulfotransferase 2##NM_022134|GAL3ST2|64090|galactose-3-O-sulfotransferase 2##BC117293|GAL3ST2|64090|galactose-3-O-sulfotransferase 2##BC117295|GAL3ST2|64090|galactose-3-O-sulfotransferase 2	0.0	0.025433	
chr5	126945131	126945220	reg1012906.p2	4.405	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-85981	+	NM_130809 TSC_hg19_v1_chr5_+_126853331 AL831963 AL832056 AL832600 AJ427339 AJ441110 AJ496322 AJ515158 AJ515428 AJ515429 AK057437 BC017066	-91824	+	NM_032446 CR749437 AK307919 BC020198 AB058676 BC152478	-318641	+	NM_001048252 AB219764	39548	+	NM_001127385 AB219832 BC071790	43550	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	473588	-	AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##NM_130809|PRRC1|133619|proline-rich coiled-coil 1##AL831963|PRRC1|133619|proline-rich coiled-coil 1##AL832056|PRRC1|133619|proline-rich coiled-coil 1##AL832600|PRRC1|133619|proline-rich coiled-coil 1##AJ427339|PRRC1|133619|proline-rich coiled-coil 1##AJ441110|PRRC1|133619|proline-rich coiled-coil 1##AJ496322|PRRC1|133619|proline-rich coiled-coil 1##AJ515158|PRRC1|133619|proline-rich coiled-coil 1##AJ515428|PRRC1|133619|proline-rich coiled-coil 1##AJ515429|PRRC1|133619|proline-rich coiled-coil 1##AK057437|PRRC1|133619|proline-rich coiled-coil 1##BC017066|PRRC1|133619|proline-rich coiled-coil 1##NM_032446|MEGF10|84466|multiple EGF-like-domains 10##CR749437|MEGF10|84466|multiple EGF-like-domains 10##AK307919|MEGF10|84466|multiple EGF-like-domains 10##BC020198|MEGF10|84466|multiple EGF-like-domains 10##AB058676|MEGF10|84466|multiple EGF-like-domains 10##BC152478|MEGF10|84466|multiple EGF-like-domains 10##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873	0.718427	0.0	denovo_WM_7:-13:0.704
chr8	125700885	125701016	reg1009575.p1	4.405	+	AF116674 TSC_hg19_v1_chr8_-_125580771	-120189	-	TSC_hg19_v1_chr8_-_125579395 AK126989	-121544	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	-149566	+	TSC_hg19_v1_chr8_-_125716430 U50573	15482	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	39495	-	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	39773	-	AF116674|MTSS1|9788|metastasis suppressor 1##AK126989|MTSS1|9788|metastasis suppressor 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##U50573|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1	0.0	0.0	
chr8	37496942	37497023	reg1010679.p1	4.405	+	TSC_hg19_v1_chr8_-_37457377 AK025743	-39614	-	NM_001031836 AK302391 BC028701	-855112	+	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	-2403995	+	TSC_hg19_v1_chr8_+_37553300 AK024361 NM_025069 BC032534	56335	+	TSC_hg19_v1_chr8_+_37594112 NM_001003791 NM_007175 AL442077	97124	+	TSC_hg19_v1_chr8_+_37594151 BC050611 AK291394 AK297279 AY358108	97162	+	AK025743|LOC157860|157860|uncharacterized LOC157860##NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##AK024361|ZNF703|80139|zinc finger protein 703##NM_025069|ZNF703|80139|zinc finger protein 703##BC032534|ZNF703|80139|zinc finger protein 703##NM_001003791|ERLIN2|11160|ER lipid raft associated 2##NM_007175|ERLIN2|11160|ER lipid raft associated 2##AL442077|ERLIN2|11160|ER lipid raft associated 2##BC050611|ERLIN2|11160|ER lipid raft associated 2##AK291394|ERLIN2|11160|ER lipid raft associated 2##AK297279|ERLIN2|11160|ER lipid raft associated 2##AY358108|ERLIN2|11160|ER lipid raft associated 2	0.999544	0.0	
chr8	95095397	95095562	reg1011179.p1	4.405	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	-165444	+	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	-166299	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-328365	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	125315	-	AK312873 NM_001144663	134051	-	U10550 TSC_hg19_v1_chr8_-_95274525	179043	-	NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK312873|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_001144663|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##U10550|GEM|2669|GTP binding protein overexpressed in skeletal muscle	0.999346	0.0	denovo_WM_7:3:0.964
chr19	10652235	10652356	reg1014627.p1	4.404	+	AK074661 NM_001166215	-23659	-	BC034703 AK094880 BC067781 NM_030760	-24177	-	TSC_hg19_v1_chr19_-_10625679 AB385542 DQ891290 DQ893341 DQ894474 DQ896661 AF331840 AF331841 AF331842	-26608	-	AK294676 TSC_hg19_v1_chr19_+_10654589	2285	+	TSC_hg19_v1_chr19_+_10654592 AK056210 AK314712 AK316454 BC068992 AK223383 BC007639 NM_032885 AJ312332 CU686689	2383	+	BC009303 TSC_hg19_v1_chr19_-_10676685 AL833189 AK300780	24371	-	AK074661|S1PR5|53637|sphingosine-1-phosphate receptor 5##NM_001166215|S1PR5|53637|sphingosine-1-phosphate receptor 5##BC034703|S1PR5|53637|sphingosine-1-phosphate receptor 5##AK094880|S1PR5|53637|sphingosine-1-phosphate receptor 5##BC067781|S1PR5|53637|sphingosine-1-phosphate receptor 5##NM_030760|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ891290|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ893341|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ894474|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ896661|S1PR5|53637|sphingosine-1-phosphate receptor 5##AF331840|S1PR5|53637|sphingosine-1-phosphate receptor 5##AF331841|S1PR5|53637|sphingosine-1-phosphate receptor 5##AF331842|S1PR5|53637|sphingosine-1-phosphate receptor 5##AK294676|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK056210|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK314712|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK316454|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##BC068992|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK223383|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##BC007639|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##NM_032885|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AJ312332|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##BC009303|KRI1|65095|KRI1 homolog (S. cerevisiae)##AL833189|KRI1|65095|KRI1 homolog (S. cerevisiae)##AK300780|KRI1|65095|KRI1 homolog (S. cerevisiae)	0.0	0.860359	CTCF.p2:-11:0.860
chr19	47887464	47887548	reg1012000.p1	4.404	+	NM_014681 TSC_hg19_v1_chr19_+_47852571 AK304710	-34937	+	AB038237 NM_018485	-47136	+	BC008982 NM_001736 TSC_hg19_v1_chr19_+_47813117 M62505	-74404	+	AB463870 AK289950 TSC_hg19_v1_chr19_-_47922380	34854	-	TSC_hg19_v1_chr19_-_47922396 BC069251	34892	-	TSC_hg19_v1_chr19_-_47922468 BC025404	35000	-	NM_014681|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34##AK304710|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34##AB038237|GPR77|27202|G protein-coupled receptor 77##NM_018485|GPR77|27202|G protein-coupled receptor 77##BC008982|C5AR1|728|complement component 5a receptor 1##NM_001736|C5AR1|728|complement component 5a receptor 1##M62505|C5AR1|728|complement component 5a receptor 1##AK289950|MEIS3|56917|Meis homeobox 3##BC069251|MEIS3|56917|Meis homeobox 3##BC025404|MEIS3|56917|Meis homeobox 3	1.612734	0.0	denovo_WM_7:84:0.240
chr20	42048960	42049057	reg1014887.p1	4.404	+	AB006621 BC153300 TSC_hg19_v1_chr20_-_41818547 AF043644 NM_007050 NM_133170	-230498	-	TSC_hg19_v1_chr20_-_40247013 BC039860 BC040016 AK296955 BC012516 AY034072 NM_032221	-1801947	-	AB089149 NM_052846	-2053511	-	TSC_hg19_v1_chr20_+_42086514 NM_006275	37484	+	TSC_hg19_v1_chr20_+_42086535 AK291203 AK300411 AB208976 BC006832 U30828 U30829 U30883 CU675469 AB451251 AB451375	37595	+	TSC_hg19_v1_chr20_+_42136336 NM_032107 AK299199	87336	+	AB006621|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##BC153300|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##AF043644|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_007050|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_133170|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##BC039860|CHD6|84181|chromodomain helicase DNA binding protein 6##BC040016|CHD6|84181|chromodomain helicase DNA binding protein 6##AK296955|CHD6|84181|chromodomain helicase DNA binding protein 6##BC012516|CHD6|84181|chromodomain helicase DNA binding protein 6##AY034072|CHD6|84181|chromodomain helicase DNA binding protein 6##NM_032221|CHD6|84181|chromodomain helicase DNA binding protein 6##AB089149|EMILIN3|90187|elastin microfibril interfacer 3##NM_052846|EMILIN3|90187|elastin microfibril interfacer 3##NM_006275|SRSF6|6431|serine/arginine-rich splicing factor 6##AK291203|SRSF6|6431|serine/arginine-rich splicing factor 6##AK300411|SRSF6|6431|serine/arginine-rich splicing factor 6##AB208976|SRSF6|6431|serine/arginine-rich splicing factor 6##BC006832|SRSF6|6431|serine/arginine-rich splicing factor 6##U30828|SRSF6|6431|serine/arginine-rich splicing factor 6##U30883|SRSF6|6431|serine/arginine-rich splicing factor 6##AB451251|SRSF6|6431|serine/arginine-rich splicing factor 6##AB451375|SRSF6|6431|serine/arginine-rich splicing factor 6##NM_032107|L3MBTL1|26013|l(3)mbt-like 1 (Drosophila)##AK299199|L3MBTL1|26013|l(3)mbt-like 1 (Drosophila)	1.955744	0.0	denovo_WM_7:-14:0.239	denovo_WM_7:-15:0.239	denovo_WM_7:-16:0.239	denovo_WM_7:-17:0.239	denovo_WM_7:-40:0.914
chr2	191512917	191513001	reg1000884.p1	4.404	+	TSC_hg19_v1_chr2_-_191399454 NM_001142645	-113493	-	AK296987 TSC_hg19_v1_chr2_-_191399436	-113532	-	AK098085 TSC_hg19_v1_chr2_+_191301120	-211889	+	TSC_hg19_v1_chr2_+_191513840 NM_005966 BC035724 AK292446	1007	+	AK289747 NM_014905 TSC_hg19_v1_chr2_+_191745546	232587	+	TSC_hg19_v1_chr2_+_191745547 BC038507 AB020645 AF158555	232598	+	NM_001142645|TMEM194B|100131211|transmembrane protein 194B##AK296987|TMEM194B|100131211|transmembrane protein 194B##AK098085|MFSD6|54842|major facilitator superfamily domain containing 6##NM_005966|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##BC035724|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK292446|NAB1|4664|NGFI-A binding protein 1 (EGR1 binding protein 1)##AK289747|GLS|2744|glutaminase##NM_014905|GLS|2744|glutaminase##BC038507|GLS|2744|glutaminase##AB020645|GLS|2744|glutaminase##AF158555|GLS|2744|glutaminase	0.0	0.0	
chr3	185825717	185825897	reg1014873.p1	4.404	+	TSC_hg19_v1_chr3_-_185655843 AK315632 NM_001243879 NM_004593	-169929	-	TSC_hg19_v1_chr3_-_185655809 AK098191	-169992	-	TSC_hg19_v1_chr3_-_185655803 BC000451 BC000160 U87836 AK308267	-170017	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	539	-	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	1049	-	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	254127	-	AK315632|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_001243879|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_004593|TRA2B|6434|transformer 2 beta homolog (Drosophila)##AK098191|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC000451|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC000160|TRA2B|6434|transformer 2 beta homolog (Drosophila)##U87836|TRA2B|6434|transformer 2 beta homolog (Drosophila)##AK308267|TRA2B|6434|transformer 2 beta homolog (Drosophila)##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa	0.996998	0.0	denovo_WM_7:-9:0.951
chr5	101927564	101927648	reg1011714.p2	4.404	+	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	-92973	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	-295498	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-1688678	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	273924	+	M37721 TSC_hg19_v1_chr5_+_102201730 AK296521 AK290158 S75037 S75038 AB527419 AB095007 BT007419	274200	+	BC151135 BC157835 BC015325 CR627424 AK295796 AK225572 AK000132 NM_017676 TSC_hg19_v1_chr5_-_102455843	528207	-	DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase##M37721|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK296521|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK290158|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75037|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75038|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AB095007|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BT007419|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BC151135|GIN1|54826|gypsy retrotransposon integrase 1##BC157835|GIN1|54826|gypsy retrotransposon integrase 1##BC015325|GIN1|54826|gypsy retrotransposon integrase 1##CR627424|GIN1|54826|gypsy retrotransposon integrase 1##AK295796|GIN1|54826|gypsy retrotransposon integrase 1##AK225572|GIN1|54826|gypsy retrotransposon integrase 1##AK000132|GIN1|54826|gypsy retrotransposon integrase 1##NM_017676|GIN1|54826|gypsy retrotransposon integrase 1	0.0	0.0	
chr6	2858481	2858606	reg1012125.p1	4.404	+	TSC_hg19_v1_chr6_-_2842202 AK304641 AK309765	-16346	-	TSC_hg19_v1_chr6_-_2842095 BC009015 NM_030666 M93056 AK298044 AK312973 AK223370 AK291327	-16461	-	TSC_hg19_v1_chr6_-_2840686 BT006928 AB590702	-17791	-	TSC_hg19_v1_chr6_-_2903544 BC002538 AB060690 L40378 AK314842 NM_004155	44965	-	AK098566 TSC_hg19_v1_chr6_-_2971511	112871	-	Z22658 TSC_hg19_v1_chr6_-_2971802 BC098564	113268	-	AK304641|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK309765|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC009015|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##NM_030666|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##M93056|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK298044|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK312973|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK223370|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##AK291327|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BT006928|SERPINB1|1992|serpin peptidase inhibitor, clade B (ovalbumin), member 1##BC002538|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AB060690|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##L40378|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK314842|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##NM_004155|SERPINB9|5272|serpin peptidase inhibitor, clade B (ovalbumin), member 9##AK098566|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##Z22658|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##BC098564|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6	0.999297	0.0	
chr9	44800920	44801015	reg1014007.p2	4.404	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-1116124	+	NM_001145196	-1170238	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-1667480	-	TSC_hg19_v1_chr9_+_45441926 BC006438	640959	+	BC040528 NM_001113541 NM_015667	20708642	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21656334	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.995123	0.0	denovo_WM_7:40:0.974
chr1	204490338	204490458	reg1002897.p1	4.403	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	-4788	+	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	-4896	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-26633	-	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	164193	-	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	307414	+	TSC_hg19_v1_chr1_+_204839989 AK308686	349585	+	AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AK308686|NFASC|23114|neurofascin	0.020843	0.0	
chr16	73011660	73011726	reg1012217.p2	4.403	+	TSC_hg19_v1_chr16_-_72991733 BC029653	-19988	-	TSC_hg19_v1_chr16_+_72699031 AK021563	-312629	+	AK122925 NM_001160213	-805345	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	70528	-	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	80893	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	1319000	+	BC029653|ZFHX3|463|zinc finger homeobox 3##AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.306333	0.0	denovo_WM_7:-107:0.243
chr17	80091229	80091397	reg1012977.p1	4.403	+	TSC_hg19_v1_chr17_-_80056105 BC063242 NM_004104	-35209	-	TSC_hg19_v1_chr17_-_80056081 AB209988 U29344	-35246	-	TSC_hg19_v1_chr17_-_80054282 AY451392 U26644 AB384663	-37041	-	TSC_hg19_v1_chr17_-_80170705 BC040264 BC110997 NM_198082	79422	-	NM_001042422 NM_001206950 TSC_hg19_v1_chr17_+_80186285	95036	+	NM_004207 TSC_hg19_v1_chr17_+_80186920 AK127090 AK223040 U81800	95603	+	BC063242|FASN|2194|fatty acid synthase##NM_004104|FASN|2194|fatty acid synthase##AB209988|FASN|2194|fatty acid synthase##U29344|FASN|2194|fatty acid synthase##AY451392|FASN|2194|fatty acid synthase##U26644|FASN|2194|fatty acid synthase##BC040264|CCDC57|284001|coiled-coil domain containing 57##BC110997|CCDC57|284001|coiled-coil domain containing 57##NM_198082|CCDC57|284001|coiled-coil domain containing 57##NM_001042422|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##NM_001206950|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##NM_004207|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##AK223040|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##U81800|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)	2.588166	0.0	denovo_WM_7:32:0.392	denovo_WM_7:33:0.408	denovo_WM_7:-48:0.584
chr2	223632872	223632999	reg1012275.p1	4.403	+	TSC_hg19_v1_chr2_+_223536376 AF384163 NM_058165	-96526	+	TSC_hg19_v1_chr2_-_223520807 AK294158 BC006502 AF042346 CU676064 BC011261 AK001025 BC008434 BC017783 D84430 AK316497 AK291531 AF161521 BC022273 NM_005687	-112141	-	TSC_hg19_v1_chr2_+_223289285 AF542512 BC134342 NM_152386 BC106905 BC114513 BC106904	-343628	+	TSC_hg19_v1_chr2_+_223725753 NM_004457 NM_203372 BC041692 AK314621 AB061712	92812	+	NM_080671 TSC_hg19_v1_chr2_+_223916907 DQ192293 AK313203 BC014429 AY065987	283962	+	M25756 TSC_hg19_v1_chr2_-_224467083 AK298828 AK312452	834131	-	AF384163|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##NM_058165|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##AK294158|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC006502|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF042346|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC011261|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK001025|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC008434|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC017783|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##D84430|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK316497|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK291531|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF161521|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC022273|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##NM_005687|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF542512|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC134342|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_152386|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106905|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC114513|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106904|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_004457|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_203372|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##BC041692|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AK314621|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AB061712|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_080671|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##DQ192293|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AK313203|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##BC014429|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AY065987|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##M25756|SCG2|7857|secretogranin II##AK298828|SCG2|7857|secretogranin II##AK312452|SCG2|7857|secretogranin II	0.998991	0.0	denovo_WM_7:-2:0.518	denovo_WM_7:-3:0.462
chr3	118308311	118308463	reg1011006.p1	4.403	+	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	-2144014	-	AK315286 TSC_hg19_v1_chr3_-_116164338	-2144056	-	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-2965968	+	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	445146	-	AB071618 NM_001015887 TSC_hg19_v1_chr3_-_118753697 AY358141	445296	-	AK097667 NM_152538 AK292387	556510	-	BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AK315286|LSAMP|4045|limbic system-associated membrane protein##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11##AB071618|IGSF11|152404|immunoglobulin superfamily, member 11##NM_001015887|IGSF11|152404|immunoglobulin superfamily, member 11##AY358141|IGSF11|152404|immunoglobulin superfamily, member 11##AK097667|IGSF11|152404|immunoglobulin superfamily, member 11##NM_152538|IGSF11|152404|immunoglobulin superfamily, member 11##AK292387|IGSF11|152404|immunoglobulin superfamily, member 11	1.990368	0.0	denovo_WM_7:-4:0.269	denovo_WM_7:-5:0.224	denovo_WM_7:-23:0.232	denovo_WM_7:-24:0.277
chr4	109824132	109824271	reg1012729.p2	4.403	+	AK091888 AX747236 AK294072 AJ298293 AK294235 BC022526 NM_001146590 NM_001146627 NM_031279	-140058	-	AF068297 TSC_hg19_v1_chr4_+_109571786 AK312185 DQ893222 DQ896551 AF343342	-252406	+	TSC_hg19_v1_chr4_+_109571754 NM_021227 BC054857 BC016321 AF161425 AF201937	-252448	+	AF293340 AF293341 NM_032518 NM_198721 TSC_hg19_v1_chr4_-_110223816	399606	-	TSC_hg19_v1_chr4_+_110354836 AJ131245	530646	+	TSC_hg19_v1_chr4_-_110354918 BC009800	530742	-	AK091888|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##AK294072|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##AJ298293|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##AK294235|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##BC022526|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##NM_001146590|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##NM_001146627|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##NM_031279|AGXT2L1|64850|alanine-glyoxylate aminotransferase 2-like 1##AF068297|OSTC|58505|oligosaccharyltransferase complex subunit##AK312185|OSTC|58505|oligosaccharyltransferase complex subunit##DQ893222|OSTC|58505|oligosaccharyltransferase complex subunit##DQ896551|OSTC|58505|oligosaccharyltransferase complex subunit##AF343342|OSTC|58505|oligosaccharyltransferase complex subunit##NM_021227|OSTC|58505|oligosaccharyltransferase complex subunit##BC054857|OSTC|58505|oligosaccharyltransferase complex subunit##BC016321|OSTC|58505|oligosaccharyltransferase complex subunit##AF161425|OSTC|58505|oligosaccharyltransferase complex subunit##AF201937|OSTC|58505|oligosaccharyltransferase complex subunit##AF293340|COL25A1|84570|collagen, type XXV, alpha 1##AF293341|COL25A1|84570|collagen, type XXV, alpha 1##NM_032518|COL25A1|84570|collagen, type XXV, alpha 1##NM_198721|COL25A1|84570|collagen, type XXV, alpha 1##AJ131245|SEC24B|10427|SEC24 family, member B (S. cerevisiae)##BC009800|1/2-SBSRNA4|100533182|lncRNA_BC009800	0.0	0.0	
chr5	90657315	90657450	reg1008326.p2	4.403	+	AK091866 TSC_hg19_v1_chr5_-_90610220	-47137	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-802768	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-832016	-	TSC_hg19_v1_chr5_+_90676181 BC043415	18780	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	21750	-	AK311143 BC042879 TSC_hg19_v1_chr5_-_92916977 BC010610 BC018089 AK095719	2259581	-	AK091866|LOC100505994|100505994|uncharacterized LOC100505994##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3##AK311143|FLJ42709|441094|uncharacterized LOC441094##BC042879|FLJ42709|441094|uncharacterized LOC441094##BC010610|FLJ42709|441094|uncharacterized LOC441094##BC018089|FLJ42709|441094|uncharacterized LOC441094##AK095719|FLJ42709|441094|uncharacterized LOC441094	0.978048	0.0	denovo_WM_7:-68:0.963
chr8	38623330	38623510	reg1014712.p2	4.403	+	AY072874 AY072875 TSC_hg19_v1_chr8_+_38614814 AK308849	-8634	+	BX647696 NM_001146216	-37717	+	BC137511 BC137512 BC139744 AK125570 NM_207412	-237244	-	AK314620 NM_001122824 NM_006283 TSC_hg19_v1_chr8_+_38644722	21302	+	TSC_hg19_v1_chr8_+_38644754 AF049910 AY177411	21348	+	AK098787 NM_021623 TSC_hg19_v1_chr8_+_38758793 AK296068 AK291842 AF286164	135391	+	AY072874|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AY072875|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AK308849|TACC1|6867|transforming, acidic coiled-coil containing protein 1##BX647696|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_001146216|TACC1|6867|transforming, acidic coiled-coil containing protein 1##BC137511|C8orf86|389649|chromosome 8 open reading frame 86##BC137512|C8orf86|389649|chromosome 8 open reading frame 86##BC139744|C8orf86|389649|chromosome 8 open reading frame 86##AK125570|C8orf86|389649|chromosome 8 open reading frame 86##NM_207412|C8orf86|389649|chromosome 8 open reading frame 86##AK314620|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_001122824|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_006283|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AF049910|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AY177411|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AK098787|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##NM_021623|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AK296068|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AK291842|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AF286164|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2	0.0	0.0	
chr9	20637698	20637840	reg1011947.p1	4.403	+	AK225957 TSC_hg19_v1_chr9_-_20622494 BC036089 NM_004529 BX649194	-15273	-	AK312914 BC030550 L13744 TSC_hg19_v1_chr9_-_20622460	-15321	-	BC143889 BC069622 AF097366 AF177987 NM_001193288 NM_020344	-850818	-	AK056522 AY139834 NM_017794	20538	+	BC114215 TSC_hg19_v1_chr9_-_21031636 BX648779 NM_001010915	393862	-	AB451491 AB451323 AB451452 BC069314 BC096150 BC096151 BC096152 BC096153 V00547 AB587428 V00546 M25460 M28622 NM_002176	440104	-	AK225957|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC036089|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##NM_004529|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BX649194|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##AK312914|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC030550|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##L13744|MLLT3|4300|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3##BC143889|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##BC069622|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AF097366|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AF177987|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##NM_001193288|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##NM_020344|SLC24A2|25769|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2##AK056522|KIAA1797|54914|KIAA1797##AY139834|KIAA1797|54914|KIAA1797##NM_017794|KIAA1797|54914|KIAA1797##BC114215|PTPLAD2|401494|protein tyrosine phosphatase-like A domain containing 2##BX648779|PTPLAD2|401494|protein tyrosine phosphatase-like A domain containing 2##NM_001010915|PTPLAD2|401494|protein tyrosine phosphatase-like A domain containing 2##AB451323|IFNB1|3456|interferon, beta 1, fibroblast##AB451452|IFNB1|3456|interferon, beta 1, fibroblast##BC069314|IFNB1|3456|interferon, beta 1, fibroblast##BC096150|IFNB1|3456|interferon, beta 1, fibroblast##BC096151|IFNB1|3456|interferon, beta 1, fibroblast##BC096152|IFNB1|3456|interferon, beta 1, fibroblast##BC096153|IFNB1|3456|interferon, beta 1, fibroblast##V00547|IFNB1|3456|interferon, beta 1, fibroblast##V00546|IFNB1|3456|interferon, beta 1, fibroblast##M25460|IFNB1|3456|interferon, beta 1, fibroblast##M28622|IFNB1|3456|interferon, beta 1, fibroblast##NM_002176|IFNB1|3456|interferon, beta 1, fibroblast	1.191911	0.0	
chr12	133046071	133046194	reg1014241.p1	4.402	+	BC069354 AB040672 NM_001122636 BC157845 BC171844	-140275	-	AF458594 NM_021808	-355560	-	TSC_hg19_v1_chr12_+_132629014 BC071958 CU687200 DQ892518 DQ895730 BC007893	-417076	+	NM_001142641	21024	+	NM_001195520	140904	-	AF260426 TSC_hg19_v1_chr12_+_133195386 AF190822 AF190823 AF190824 AF190825 AF260427 AF260428 AF260429 AY346374 BC109200 NM_012226 NM_016318 NM_170682 NM_170683 NM_174872 NM_174873 AF109387 AF109388	149272	+	BC069354|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##AB040672|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##NM_001122636|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##BC157845|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##BC171844|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##AF458594|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##NM_021808|GALNT9|50614|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)##BC071958|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##DQ892518|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##DQ895730|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##BC007893|NOC4L|79050|nucleolar complex associated 4 homolog (S. cerevisiae)##NM_001142641|FBRSL1|57666|fibrosin-like 1##NM_001195520|LOC100507055|100507055|uncharacterized LOC100507055##AF260426|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190822|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190823|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190824|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190825|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260427|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260428|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260429|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AY346374|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##BC109200|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_012226|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_016318|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_170682|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_170683|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_174872|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_174873|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF109387|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF109388|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2	0.0	0.0	
chr2	114189004	114189184	reg1008499.p1	4.402	+	S77904 S77905 S77906 X69699 BC001060 AK292191 AK309154 AK225538 NM_003466 NM_013952 NM_013953 NM_013992 TSC_hg19_v1_chr2_-_114036499	-152601	-	TSC_hg19_v1_chr2_+_113993123 AK056052 AK307781 BX537688 AK056355 AK130275	-195824	+	TSC_hg19_v1_chr2_+_113931576 BC035307 BC073151	-257513	+	AK290072 NM_172003 AK303653 AY343910 TSC_hg19_v1_chr2_+_114195398 AY320414 BC120991 BC120992 AK225251 AF452722	6245	+	AK122950 NM_012184 BC136428 AY344639 AF452723	67642	+	AL137714 AK302089 AK308574 TSC_hg19_v1_chr2_+_114341674	152523	+	S77904|PAX8|7849|paired box 8##S77905|PAX8|7849|paired box 8##S77906|PAX8|7849|paired box 8##X69699|PAX8|7849|paired box 8##BC001060|PAX8|7849|paired box 8##AK292191|PAX8|7849|paired box 8##AK309154|PAX8|7849|paired box 8##AK225538|PAX8|7849|paired box 8##NM_003466|PAX8|7849|paired box 8##NM_013952|PAX8|7849|paired box 8##NM_013953|PAX8|7849|paired box 8##NM_013992|PAX8|7849|paired box 8##AK056052|LOC654433|654433|uncharacterized LOC654433##AK307781|LOC654433|654433|uncharacterized LOC654433##BX537688|LOC654433|654433|uncharacterized LOC654433##AK056355|LOC654433|654433|uncharacterized LOC654433##AK130275|LOC654433|654433|uncharacterized LOC654433##BC035307|PSD4|23550|pleckstrin and Sec7 domain containing 4##BC073151|PSD4|23550|pleckstrin and Sec7 domain containing 4##AK290072|CBWD2|150472|COBW domain containing 2##NM_172003|CBWD2|150472|COBW domain containing 2##AK303653|CBWD2|150472|COBW domain containing 2##AY343910|CBWD2|150472|COBW domain containing 2##AY320414|CBWD1|55871|COBW domain containing 1##BC120991|CBWD2|150472|COBW domain containing 2##BC120992|CBWD2|150472|COBW domain containing 2##AK225251|CBWD2|150472|COBW domain containing 2##AF452722|CBWD2|150472|COBW domain containing 2##AK122950|FOXD4L1|200350|forkhead box D4-like 1##NM_012184|FOXD4L1|200350|forkhead box D4-like 1##BC136428|FOXD4L1|200350|forkhead box D4-like 1##AY344639|FOXD4L1|200350|forkhead box D4-like 1##AF452723|FOXD4L1|200350|forkhead box D4-like 1##AL137714|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK302089|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK308574|WASH2P|375260|WAS protein family homolog 2 pseudogene	0.996825	0.0	denovo_WM_7:4:0.692
chr2	61672085	61672215	reg1011742.p1	4.402	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-267361	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-267508	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-267567	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	25707	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	25793	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	92608	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	0.997198	0.0	denovo_WM_7:-85:0.985
chr3	152120972	152121049	reg1006985.p2	4.402	+	AY358260 NM_001123228	-62232	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-103817	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-133665	-	NM_002563 Z49205	431725	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	759016	+	TSC_hg19_v1_chr3_+_152880058 BC012362	759038	+	AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family	0.999399	0.0	
chr4	128653900	128654035	reg1012457.p1	4.402	+	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	-2358	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	-99828	+	NM_024582	-2416401	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	49466	+	TSC_hg19_v1_chr4_+_128703476 AK027822 AK307464	49509	+	TSC_hg19_v1_chr4_+_128703491 AY290862 AB023421 EF197155	49625	+	NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like##AK027822|HSPA4L|22824|heat shock 70kDa protein 4-like##AK307464|HSPA4L|22824|heat shock 70kDa protein 4-like##AY290862|HSPA4L|22824|heat shock 70kDa protein 4-like##AB023421|HSPA4L|22824|heat shock 70kDa protein 4-like##EF197155|HSPA4L|22824|heat shock 70kDa protein 4-like	0.338389	0.953655	CTCF.p2:15:0.954	denovo_WM_7:52:0.338
chr7	157051040	157051164	reg1012938.p1	4.402	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-27096	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-119419	+	TSC_hg19_v1_chr7_+_156931631 NM_014671	-119456	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	78609	+	TSC_hg19_v1_chr7_+_157647233 BC034557	596172	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1329351	-	D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##NM_014671|UBE3C|9690|ubiquitin protein ligase E3C##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2	0.020596	0.0	
chr10	27146650	27146815	reg1003546.p1	4.401	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-88915	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-160086	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-160148	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	3108	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	3207	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	3273	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	1.029996	0.0	denovo_WM_7:53:0.334	denovo_WM_7:54:0.297	denovo_WM_7:55:0.297
chr11	65183963	65184050	reg1012002.p1	4.401	+	TSC_hg19_v1_chr11_+_65154127 AK074850 BC033851 AK056778 BC044658 AK291678 AK304363 BC051695	-29895	+	NM_031904 TSC_hg19_v1_chr11_+_65154083 BC021094	-29942	+	BC036869 BX648573 NM_001077241 NM_182556	-33882	-	TSC_hg19_v1_chr11_+_65190268 EF177379 GQ859162	6263	+	TSC_hg19_v1_chr11_+_65190274 AK026198	6272	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	8394	+	AK074850|FRMD8|83786|FERM domain containing 8##BC033851|FRMD8|83786|FERM domain containing 8##AK056778|FRMD8|83786|FERM domain containing 8##BC044658|FRMD8|83786|FERM domain containing 8##AK291678|FRMD8|83786|FERM domain containing 8##AK304363|FRMD8|83786|FERM domain containing 8##BC051695|FRMD8|83786|FERM domain containing 8##NM_031904|FRMD8|83786|FERM domain containing 8##BC036869|SLC25A45|283130|solute carrier family 25, member 45##BX648573|SLC25A45|283130|solute carrier family 25, member 45##NM_001077241|SLC25A45|283130|solute carrier family 25, member 45##NM_182556|SLC25A45|283130|solute carrier family 25, member 45##EF177379|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)	0.0	1.167199	CTCF.p2:-4:0.991
chr1	207099189	207099296	reg1015586.p2	4.401	+	BT006797 CU675387 DQ890699 HM480394 AF057557 NM_001193338 GQ160900 GQ160901 TSC_hg19_v1_chr1_-_207095293 AK292007 AK297053 AK301187 AK316336 BC006401 NM_001142473 NM_005449	-3955	-	NM_001185156 NM_001185157 NM_001185158 NM_006850 AY641440 AY641441 U16261 BC009681	-28442	+	AF224266 NM_018724 BC117386 BC117390 BC074948 BC074949 AB590628 AY876922 BC069311 BC069364 BC069398 BC069425 BC069449 BC069487 BC069523 BC069559 CU686884 HQ258739	-60067	+	BC110494 BC110495 CR749533 TSC_hg19_v1_chr1_-_207119812 AK309273 S62403 AF272149 X73079 AK225471 NM_002644	20519	-	AK298394 NM_001122979 NM_001170631 NM_032029	44714	-	BC000765 AK093826 AX748327 AY352640 NM_001083924 NM_023938	106806	-	BT006797|FAIM3|9214|Fas apoptotic inhibitory molecule 3##DQ890699|FAIM3|9214|Fas apoptotic inhibitory molecule 3##HM480394|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AF057557|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001193338|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160900|FAIM3|9214|Fas apoptotic inhibitory molecule 3##GQ160901|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK292007|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK297053|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK301187|FAIM3|9214|Fas apoptotic inhibitory molecule 3##AK316336|FAIM3|9214|Fas apoptotic inhibitory molecule 3##BC006401|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001142473|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_005449|FAIM3|9214|Fas apoptotic inhibitory molecule 3##NM_001185156|IL24|11009|interleukin 24##NM_001185157|IL24|11009|interleukin 24##NM_001185158|IL24|11009|interleukin 24##NM_006850|IL24|11009|interleukin 24##AY641440|IL24|11009|interleukin 24##AY641441|IL24|11009|interleukin 24##U16261|IL24|11009|interleukin 24##BC009681|IL24|11009|interleukin 24##AF224266|IL20|50604|interleukin 20##NM_018724|IL20|50604|interleukin 20##BC117386|IL20|50604|interleukin 20##BC117390|IL20|50604|interleukin 20##BC074948|IL20|50604|interleukin 20##BC074949|IL20|50604|interleukin 20##AY876922|IL20|50604|interleukin 20##BC069311|IL20|50604|interleukin 20##BC069364|IL20|50604|interleukin 20##BC069398|IL20|50604|interleukin 20##BC069425|IL20|50604|interleukin 20##BC069449|IL20|50604|interleukin 20##BC069487|IL20|50604|interleukin 20##BC069523|IL20|50604|interleukin 20##BC069559|IL20|50604|interleukin 20##HQ258739|IL20|50604|interleukin 20##BC110494|PIGR|5284|polymeric immunoglobulin receptor##BC110495|PIGR|5284|polymeric immunoglobulin receptor##CR749533|PIGR|5284|polymeric immunoglobulin receptor##S62403|PIGR|5284|polymeric immunoglobulin receptor##AF272149|PIGR|5284|polymeric immunoglobulin receptor##X73079|PIGR|5284|polymeric immunoglobulin receptor##AK225471|PIGR|5284|polymeric immunoglobulin receptor##NM_002644|PIGR|5284|polymeric immunoglobulin receptor##AK298394|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001122979|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_001170631|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##NM_032029|FCAMR|83953|Fc receptor, IgA, IgM, high affinity##BC000765|C1orf116|79098|chromosome 1 open reading frame 116##AK093826|C1orf116|79098|chromosome 1 open reading frame 116##AY352640|C1orf116|79098|chromosome 1 open reading frame 116##NM_001083924|C1orf116|79098|chromosome 1 open reading frame 116##NM_023938|C1orf116|79098|chromosome 1 open reading frame 116	0.997227	0.0	denovo_WM_7:31:0.841
chr14	64214571	64214651	reg1005503.p1	4.401	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-19862	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-106049	-	BX248008 NM_001008726	-106487	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	105084	+	NM_182913 AY061758 AK297874	466266	+	NM_182910	468060	+	AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.0	0.0	
chr16	75523313	75523454	reg1014668.p2	4.401	+	TSC_hg19_v1_chr16_-_75498598 BC018082 NM_145254 AK298475 BX647432 BX648429 BX648484 AK311919	-24782	-	AM392693 AM393662 AY302139 CU676164 TSC_hg19_v1_chr16_-_75498577	-24845	-	TSC_hg19_v1_chr16_-_75498315 AK094930	-25086	-	AF280086 NM_021615	5542	-	TSC_hg19_v1_chr16_-_75529279 AF219990	5896	-	TSC_hg19_v1_chr16_-_75529303 AK311527 AK093904	5914	-	BC018082|TMEM170A|124491|transmembrane protein 170A##NM_145254|TMEM170A|124491|transmembrane protein 170A##AK298475|TMEM170A|124491|transmembrane protein 170A##BX647432|TMEM170A|124491|transmembrane protein 170A##BX648429|TMEM170A|124491|transmembrane protein 170A##BX648484|TMEM170A|124491|transmembrane protein 170A##AK311919|TMEM170A|124491|transmembrane protein 170A##AY302139|TMEM170A|124491|transmembrane protein 170A##AK094930|TMEM170A|124491|transmembrane protein 170A##AF280086|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6##NM_021615|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6	1.857981	0.0	denovo_WM_7:-60:0.483	denovo_WM_7:-76:0.218	denovo_WM_7:-77:0.223	denovo_WM_7:-78:0.303
chr2	234132437	234132595	reg1011046.p2	4.401	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-207400	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-207457	+	BC069151 BC107053 NM_005383	-235135	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	27750	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	27807	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	27841	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	0.928875	0.0	denovo_WM_7:13:0.459	denovo_WM_7:14:0.459
chr11	10955929	10956096	reg1014798.p2	4.400	+	TSC_hg19_v1_chr11_+_10879769 BC014360 BC036635	-76226	+	AK123233 TSC_hg19_v1_chr11_-_10879580 AK315033 BC047754 AF205600 BC017803 BC038508 NM_001143667 NM_021211	-76494	-	TSC_hg19_v1_chr11_+_10830752 AK056207	-125215	+	AK055111 BC037341 TSC_hg19_v1_chr11_-_11643550 BC060864 NM_198516	687566	-	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	907004	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	907479	+	BC014360|LOC729013|729013|uncharacterized LOC729013##BC036635|LOC729013|729013|uncharacterized LOC729013##AK123233|ZBED5|58486|zinc finger, BED-type containing 5##AK315033|ZBED5|58486|zinc finger, BED-type containing 5##BC047754|ZBED5|58486|zinc finger, BED-type containing 5##AF205600|ZBED5|58486|zinc finger, BED-type containing 5##BC017803|ZBED5|58486|zinc finger, BED-type containing 5##BC038508|ZBED5|58486|zinc finger, BED-type containing 5##NM_001143667|ZBED5|58486|zinc finger, BED-type containing 5##NM_021211|ZBED5|58486|zinc finger, BED-type containing 5##AK055111|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC037341|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC060864|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##NM_198516|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47	1.983861	0.0	denovo_WM_7:13:0.855	denovo_WM_7:28:0.742	denovo_WM_7:29:0.244
chr11	75863725	75863882	reg1014870.p2	4.400	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-337525	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-337581	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-383880	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	53709	-	TSC_hg19_v1_chr11_-_75921806 AK075540	58001	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	228205	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	1.057558	0.0	denovo_WM_7:-13:0.477	denovo_WM_7:-14:0.477
chr14	35020149	35020255	reg1013875.p1	4.400	+	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	-11317	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	-88715	-	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-600053	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	79153	-	BC011444 AK314157 NM_021914 AF134802	162786	-	TSC_hg19_v1_chr14_-_35183800 NM_001243645 AF134803 BC022364 BC022876 BC025683 NM_138638	163673	-	AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6##BC011444|CFL2|1073|cofilin 2 (muscle)##AK314157|CFL2|1073|cofilin 2 (muscle)##NM_021914|CFL2|1073|cofilin 2 (muscle)##AF134802|CFL2|1073|cofilin 2 (muscle)##NM_001243645|CFL2|1073|cofilin 2 (muscle)##AF134803|CFL2|1073|cofilin 2 (muscle)##BC022364|CFL2|1073|cofilin 2 (muscle)##BC022876|CFL2|1073|cofilin 2 (muscle)##BC025683|CFL2|1073|cofilin 2 (muscle)##NM_138638|CFL2|1073|cofilin 2 (muscle)	2.943913	0.0	denovo_WM_7:-33:0.736	denovo_WM_7:-56:0.237	denovo_WM_7:-57:0.639	denovo_WM_7:-72:0.787
chr16	53474794	53474951	reg1011852.p1	4.400	+	TSC_hg19_v1_chr16_+_53469560 AK300047	-5326	+	TSC_hg19_v1_chr16_+_53468409 S67171 X74594	-6315	+	TSC_hg19_v1_chr16_+_53468393 X76061	-6475	+	TSC_hg19_v1_chr16_+_53479685 BX537767	4816	+	TSC_hg19_v1_chr16_-_53537122 AK303503 BC001134 BC095401 AK222743 AK023320 NM_001012398 NM_022476	62268	-	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	262885	-	AK300047|RBL2|5934|retinoblastoma-like 2 (p130)##S67171|RBL2|5934|retinoblastoma-like 2 (p130)##X74594|RBL2|5934|retinoblastoma-like 2 (p130)##X76061|RBL2|5934|retinoblastoma-like 2 (p130)##BX537767|RBL2|5934|retinoblastoma-like 2 (p130)##AK303503|AKTIP|64400|AKT interacting protein##BC001134|AKTIP|64400|AKT interacting protein##BC095401|AKTIP|64400|AKT interacting protein##AK222743|AKTIP|64400|AKT interacting protein##AK023320|AKTIP|64400|AKT interacting protein##NM_001012398|AKTIP|64400|AKT interacting protein##NM_022476|AKTIP|64400|AKT interacting protein##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like	1.921187	0.0	denovo_WM_7:-18:0.671	denovo_WM_7:-19:0.206
chr17	29579055	29579197	reg1013036.p1	4.400	+	TSC_hg19_v1_chr17_+_29421994 AK289936 M82814 M89914 BC144643 D42072	-157017	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	-157182	+	TSC_hg19_v1_chr17_+_29298062 AK226030 BC082262 AK312979 AK122646 AK122709 AB470605 AY598332	-280986	+	X51694 BC018050 AK222663 AK312445 NM_002544	45188	-	AK312822 TSC_hg19_v1_chr17_-_29641073	61945	-	TSC_hg19_v1_chr17_-_29641092 BC005926	61963	-	AK289936|NF1|4763|neurofibromin 1##M82814|NF1|4763|neurofibromin 1##M89914|NF1|4763|neurofibromin 1##BC144643|NF1|4763|neurofibromin 1##D42072|NF1|4763|neurofibromin 1##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1##AK226030|RNF135|84282|ring finger protein 135##BC082262|RNF135|84282|ring finger protein 135##AK312979|RNF135|84282|ring finger protein 135##AK122646|RNF135|84282|ring finger protein 135##AK122709|RNF135|84282|ring finger protein 135##AB470605|RNF135|84282|ring finger protein 135##AY598332|RNF135|84282|ring finger protein 135##X51694|OMG|4974|oligodendrocyte myelin glycoprotein##BC018050|OMG|4974|oligodendrocyte myelin glycoprotein##AK222663|OMG|4974|oligodendrocyte myelin glycoprotein##AK312445|OMG|4974|oligodendrocyte myelin glycoprotein##NM_002544|OMG|4974|oligodendrocyte myelin glycoprotein##AK312822|EVI2B|2124|ecotropic viral integration site 2B##BC005926|EVI2B|2124|ecotropic viral integration site 2B	0.99985	0.0	
chr6	155479773	155479877	reg1008449.p2	4.400	+	NM_012454	-68403	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-425000	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-425271	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	58303	+	BC020838 NM_001001346	105321	+	AB464304 CU676068 DQ891970 DQ895159 TSC_hg19_v1_chr6_-_155635608	155760	-	NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20##DQ891970|TFB1M|51106|transcription factor B1, mitochondrial##DQ895159|TFB1M|51106|transcription factor B1, mitochondrial	1.058212	0.0	denovo_WM_7:95:0.802
chr6	64220212	64220339	reg1010227.p1	4.400	+	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	-190411	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	-1224274	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-5932596	-	TSC_hg19_v1_chr6_+_64231650 CR749458	11380	+	TSC_hg19_v1_chr6_+_64281913 BC045571 NM_003463	61641	+	TSC_hg19_v1_chr6_+_64282432 AK312526	62160	+	DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC045571|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##NM_003463|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AK312526|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	1.51229	0.0	denovo_WM_7:12:0.348
chr1	15545061	15545194	reg1011292.p1	4.399	+	TSC_hg19_v1_chr1_+_15480249 AK001061 NM_001136218 NM_018022 BC000593 BC005177 AK098467	-64879	+	AK129922 TSC_hg19_v1_chr1_+_15479310	-65823	+	AK292184 NM_001136216 NM_001136217 TSC_hg19_v1_chr1_+_15479047	-66096	+	AK057963 NM_052929	28640	+	TSC_hg19_v1_chr1_+_15736390 NM_024329	191273	+	BC068473 TSC_hg19_v1_chr1_+_15736425 BC007233 BC014923 BC023611	191308	+	AK001061|TMEM51|55092|transmembrane protein 51##NM_001136218|TMEM51|55092|transmembrane protein 51##NM_018022|TMEM51|55092|transmembrane protein 51##BC000593|TMEM51|55092|transmembrane protein 51##BC005177|TMEM51|55092|transmembrane protein 51##AK098467|TMEM51|55092|transmembrane protein 51##AK129922|TMEM51|55092|transmembrane protein 51##AK292184|TMEM51|55092|transmembrane protein 51##NM_001136216|TMEM51|55092|transmembrane protein 51##NM_001136217|TMEM51|55092|transmembrane protein 51##AK057963|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_052929|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_024329|EFHD2|79180|EF-hand domain family, member D2##BC068473|EFHD2|79180|EF-hand domain family, member D2##BC007233|EFHD2|79180|EF-hand domain family, member D2##BC014923|EFHD2|79180|EF-hand domain family, member D2##BC023611|EFHD2|79180|EF-hand domain family, member D2	0.0	0.0	
chr11	63744339	63744415	reg1012831.p1	4.399	+	TSC_hg19_v1_chr11_+_63742069 BC063025 NM_004074 BC000501 AK311934 BT009803 CR407687	-2294	+	TSC_hg19_v1_chr11_+_63706473 NM_024771 AK023910 AK300451 AK303557 JF263566 BC041617 BC052298	-37893	+	TSC_hg19_v1_chr11_-_63684632 AB593132	-59738	-	AK098029 NM_017670	8947	+	TSC_hg19_v1_chr11_+_63753896 AK000120	9484	+	BC010368 BC107701 TSC_hg19_v1_chr11_+_63753917 AK303228 AF161381 AK225133 AL096714 AK091830 BC007519 AY177200 CU675687 CU679683	9543	+	BC063025|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_004074|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BC000501|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##AK311934|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BT009803|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##CR407687|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_024771|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK023910|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK300451|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK303557|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##JF263566|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC041617|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC052298|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AB593132|RCOR2|283248|REST corepressor 2##AK098029|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##NM_017670|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK000120|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC010368|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC107701|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK303228|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AF161381|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK225133|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AL096714|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK091830|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC007519|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AY177200|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1	1.026352	0.0	
chr16	81784117	81784264	reg1008822.p1	4.398	+	AY172689 NM_030629	-255237	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	-305357	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-435540	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	28707	+	TSC_hg19_v1_chr16_+_81812901 AB208914	28712	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	28740	+	AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	0.996888	0.0	
chr17	41564244	41564424	reg1015187.p1	4.398	+	TSC_hg19_v1_chr17_+_41561383 BC047327 BC044586 AB384688 CU692214	-2939	+	AK294046 TSC_hg19_v1_chr17_+_41561351 BC020697 AK303319 D50487 NM_004941 AK291664	-3037	+	TSC_hg19_v1_chr17_+_41476360 NM_001661 AK314951 BC000043 AB060692 L38490	-87967	+	D12765 TSC_hg19_v1_chr17_-_41622738 DQ396626	58406	-	BC016623 AK290429 AK299019 AK312934 NM_001986	58941	-	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	59392	-	BC047327|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##BC044586|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK294046|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##BC020697|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK303319|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##D50487|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##NM_004941|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK291664|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##NM_001661|ARL4D|379|ADP-ribosylation factor-like 4D##AK314951|ARL4D|379|ADP-ribosylation factor-like 4D##BC000043|ARL4D|379|ADP-ribosylation factor-like 4D##AB060692|ARL4D|379|ADP-ribosylation factor-like 4D##L38490|ARL4D|379|ADP-ribosylation factor-like 4D##D12765|ETV4|2118|ets variant 4##DQ396626|ETV4|2118|ets variant 4##BC016623|ETV4|2118|ets variant 4##AK290429|ETV4|2118|ets variant 4##AK299019|ETV4|2118|ets variant 4##AK312934|ETV4|2118|ets variant 4##NM_001986|ETV4|2118|ets variant 4##AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4	0.990819	0.0	denovo_WM_7:-79:0.237	denovo_WM_7:-80:0.237	denovo_WM_7:-81:0.237	denovo_WM_7:-82:0.237
chr17	80408796	80408925	reg1011528.p1	4.398	+	TSC_hg19_v1_chr17_-_80408700 AK054876 AK309201 NM_001033046 NM_001100407 NM_001100408 NM_001193653 NM_001193654 NM_001193657	-161	-	TSC_hg19_v1_chr17_-_80408647 AK027743	-210	-	TSC_hg19_v1_chr17_-_80408610 AK056342 AK225389	-249	-	TSC_hg19_v1_chr17_+_80416087 NM_001038618 AK056966	7212	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	7703	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	7782	+	AK054876|C17orf62|79415|chromosome 17 open reading frame 62##AK309201|C17orf62|79415|chromosome 17 open reading frame 62##NM_001033046|C17orf62|79415|chromosome 17 open reading frame 62##NM_001100407|C17orf62|79415|chromosome 17 open reading frame 62##NM_001100408|C17orf62|79415|chromosome 17 open reading frame 62##NM_001193653|C17orf62|79415|chromosome 17 open reading frame 62##NM_001193654|C17orf62|79415|chromosome 17 open reading frame 62##NM_001193657|C17orf62|79415|chromosome 17 open reading frame 62##AK027743|C17orf62|79415|chromosome 17 open reading frame 62##AK056342|C17orf62|79415|chromosome 17 open reading frame 62##AK225389|C17orf62|79415|chromosome 17 open reading frame 62##NM_001038618|NARF|26502|nuclear prelamin A recognition factor##AK056966|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##BC016440|NARF|26502|nuclear prelamin A recognition factor	0.0	0.0	
chr18	21939823	21939929	reg1008729.p2	4.398	+	AK301862 NM_001242508	-48407	-	TSC_hg19_v1_chr18_-_21852189 AF274714 NM_018030	-87684	-	TSC_hg19_v1_chr18_-_21851919 AK001079	-87965	-	TSC_hg19_v1_chr18_-_21977762 BC136452 BC144117 BC041563 AK292895	37861	-	TSC_hg19_v1_chr18_-_21977789 AF323726 AF392450 AK096358 NM_080597	37955	-	TSC_hg19_v1_chr18_+_22006608 AK292533 NM_018439 BC036074	66731	+	AK301862|OSBPL1A|114876|oxysterol binding protein-like 1A##NM_001242508|OSBPL1A|114876|oxysterol binding protein-like 1A##AF274714|OSBPL1A|114876|oxysterol binding protein-like 1A##NM_018030|OSBPL1A|114876|oxysterol binding protein-like 1A##AK001079|OSBPL1A|114876|oxysterol binding protein-like 1A##BC136452|OSBPL1A|114876|oxysterol binding protein-like 1A##BC144117|OSBPL1A|114876|oxysterol binding protein-like 1A##BC041563|OSBPL1A|114876|oxysterol binding protein-like 1A##AK292895|OSBPL1A|114876|oxysterol binding protein-like 1A##AF323726|OSBPL1A|114876|oxysterol binding protein-like 1A##AF392450|OSBPL1A|114876|oxysterol binding protein-like 1A##AK096358|OSBPL1A|114876|oxysterol binding protein-like 1A##NM_080597|OSBPL1A|114876|oxysterol binding protein-like 1A##AK292533|IMPACT|55364|Impact homolog (mouse)##NM_018439|IMPACT|55364|Impact homolog (mouse)##BC036074|IMPACT|55364|Impact homolog (mouse)	0.057494	0.949755	CTCF.p2:-13:0.950
chr9	23843693	23843805	reg1013998.p1	4.398	+	AB209294 NM_004432	-17687	-	BC042393 NM_001171195 TSC_hg19_v1_chr9_-_23821847	-21905	-	TSC_hg19_v1_chr9_-_23821819 BC035004	-21936	-	BC017510 TSC_hg19_v1_chr9_-_25678278 BC046919 AY168647 BC110824	1834584	-	NM_001004125	1835106	-	AK131322 NM_001004352	2222923	+	AB209294|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_004432|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC042393|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_001171195|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC035004|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC017510|TUSC1|286319|tumor suppressor candidate 1##BC046919|TUSC1|286319|tumor suppressor candidate 1##AY168647|TUSC1|286319|tumor suppressor candidate 1##BC110824|TUSC1|286319|tumor suppressor candidate 1##NM_001004125|TUSC1|286319|tumor suppressor candidate 1##AK131322|LOC100506422|100506422|putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323##NM_001004352|LOC100506422|100506422|putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	0.98059	0.0	denovo_WM_7:26:0.827
chr10	14946303	14946434	reg1012610.p2	4.397	+	NM_001193424 NM_001193426 BC029360 TSC_hg19_v1_chr10_+_14920864 NM_001193425 NM_001193427 AK222565 AK225369 AK027067 CU688630 BC007754 NM_024670	-25529	+	TSC_hg19_v1_chr10_+_14880343 AF143723 AK292323 AB528152 AB587406	-65997	+	TSC_hg19_v1_chr10_+_14880335 AF112210 BC119690 BC119691	-66030	+	CU692508 TSC_hg19_v1_chr10_-_14996096 BC108276 AK022922 BC022254 AF395747 AF395748 AF395749 AF395750 AF395751 AF395752 AJ296101 BC009185 BX648858 AK021422 AK290598 AK307912 NM_001033855 NM_001033857 NM_001033858 NM_022487	49686	-	NM_001080836	55069	+	NM_001039702 NM_018324 BC050372 AK001844 AK001968	139559	+	NM_001193424|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193426|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC029360|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193425|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_001193427|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK222565|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK225369|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AK027067|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##BC007754|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##NM_024670|SUV39H2|79723|suppressor of variegation 3-9 homolog 2 (Drosophila)##AF143723|HSPA14|51182|heat shock 70kDa protein 14##AK292323|HSPA14|51182|heat shock 70kDa protein 14##AF112210|HSPA14|51182|heat shock 70kDa protein 14##BC119690|HSPA14|51182|heat shock 70kDa protein 14##BC119691|HSPA14|51182|heat shock 70kDa protein 14##BC108276|DCLRE1C|64421|DNA cross-link repair 1C##AK022922|DCLRE1C|64421|DNA cross-link repair 1C##BC022254|DCLRE1C|64421|DNA cross-link repair 1C##AF395747|DCLRE1C|64421|DNA cross-link repair 1C##AF395748|DCLRE1C|64421|DNA cross-link repair 1C##AF395749|DCLRE1C|64421|DNA cross-link repair 1C##AF395750|DCLRE1C|64421|DNA cross-link repair 1C##AF395751|DCLRE1C|64421|DNA cross-link repair 1C##AF395752|DCLRE1C|64421|DNA cross-link repair 1C##AJ296101|DCLRE1C|64421|DNA cross-link repair 1C##BC009185|DCLRE1C|64421|DNA cross-link repair 1C##BX648858|DCLRE1C|64421|DNA cross-link repair 1C##AK021422|DCLRE1C|64421|DNA cross-link repair 1C##AK290598|DCLRE1C|64421|DNA cross-link repair 1C##AK307912|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033855|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033857|DCLRE1C|64421|DNA cross-link repair 1C##NM_001033858|DCLRE1C|64421|DNA cross-link repair 1C##NM_022487|DCLRE1C|64421|DNA cross-link repair 1C##NM_001080836|MEIG1|644890|meiosis expressed gene 1 homolog (mouse)##NM_001039702|OLAH|55301|oleoyl-ACP hydrolase##NM_018324|OLAH|55301|oleoyl-ACP hydrolase##BC050372|OLAH|55301|oleoyl-ACP hydrolase##AK001844|OLAH|55301|oleoyl-ACP hydrolase##AK001968|OLAH|55301|oleoyl-ACP hydrolase	1.094565	0.0	
chr12	68981041	68981115	reg1010120.p1	4.397	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-254972	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-333774	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-361526	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	23568	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	23617	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	23630	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.0	0.0	
chr4	139938068	139938245	reg1013452.p2	4.397	+	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	-1163	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-774792	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-1484514	-	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	67247	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	67455	-	U43188 NM_201999	122447	-	AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43188|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_201999|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.233525	0.0	
chr4	165737875	165737987	reg1008468.p1	4.397	+	AK289711 NM_001166373	-433525	-	NM_012403	-619069	-	AB463878 AK000675 AK301408 NM_017923	-1203216	-	TSC_hg19_v1_chr4_+_165878104 AK056221 NM_153027	140171	+	TSC_hg19_v1_chr4_+_165878133 BC022381 CU692592	140220	+	BC089393 NM_001012414	160886	-	AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK056221|C4orf39|152756|chromosome 4 open reading frame 39##NM_153027|C4orf39|152756|chromosome 4 open reading frame 39##BC022381|C4orf39|152756|chromosome 4 open reading frame 39##BC089393|TRIM61|391712|tripartite motif containing 61##NM_001012414|TRIM61|391712|tripartite motif containing 61	0.986371	0.0	denovo_WM_7:15:0.569
chr5	114645627	114645760	reg1013907.p2	4.397	+	AB587510 AJ580807 NM_001040440	-13345	-	BC031242 AK307327 NM_152549	-13718	-	AY780790 AB590094 TSC_hg19_v1_chr5_-_114598563 NM_005023	-47127	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	234664	-	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	234870	-	BC109265 BC109266 NM_021649	292424	-	AJ580807|CCDC112|153733|coiled-coil domain containing 112##NM_001040440|CCDC112|153733|coiled-coil domain containing 112##BC031242|CCDC112|153733|coiled-coil domain containing 112##NM_152549|CCDC112|153733|coiled-coil domain containing 112##AY780790|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##NM_005023|PGGT1B|5229|protein geranylgeranyltransferase type I, beta subunit##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2	0.066519	0.367218	CTCF.p2:-40:0.367
chr6	11825367	11825497	reg1008265.p2	4.397	+	NM_001143948 NM_032744	-46153	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-286934	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-442892	-	NM_002114	187291	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	465161	+	TSC_hg19_v1_chr6_+_12514301 D28417	688870	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.0	0.0	
chr7	101387727	101387879	reg1009160.p1	4.397	+	BC002778 NM_138403	-115228	-	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-381586	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-422765	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	71406	+	M74099 NM_181552	73078	+	TSC_hg19_v1_chr7_+_101928390 NM_020979	540594	+	BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_020979|SH2B2|10603|SH2B adaptor protein 2	0.999876	0.0	
chr7	99818959	99819096	reg1011504.p2	4.397	+	NM_024070	-2157	+	TSC_hg19_v1_chr7_+_99775540 NM_012447 AK292394 BC146806 AK302693 BC047490 BC028684 AL833816 BC140932	-43464	+	AJ007798 TSC_hg19_v1_chr7_+_99775380	-43663	+	BC065200 AK290510 TSC_hg19_v1_chr7_-_99869856 BC044886 BC090867 BC033723 BC053367 NM_178831	50803	-	BC056606 NM_001004351	86297	+	AB103084 TSC_hg19_v1_chr7_-_99933502 BC038996 D38435 D38499 BC110395 BC044214 BC067809	114514	-	NM_024070|PVRIG|79037|poliovirus receptor related immunoglobulin domain containing##NM_012447|STAG3|10734|stromal antigen 3##AK292394|STAG3|10734|stromal antigen 3##BC146806|STAG3|10734|stromal antigen 3##AK302693|STAG3|10734|stromal antigen 3##BC047490|STAG3|10734|stromal antigen 3##BC028684|STAG3|10734|stromal antigen 3##AL833816|STAG3|10734|stromal antigen 3##BC140932|STAG3|10734|stromal antigen 3##AJ007798|STAG3|10734|stromal antigen 3##BC065200|GATS|352954|GATS, stromal antigen 3 opposite strand##AK290510|GATS|352954|GATS, stromal antigen 3 opposite strand##BC044886|GATS|352954|GATS, stromal antigen 3 opposite strand##BC090867|GATS|352954|GATS, stromal antigen 3 opposite strand##BC033723|GATS|352954|GATS, stromal antigen 3 opposite strand##BC053367|GATS|352954|GATS, stromal antigen 3 opposite strand##NM_178831|GATS|352954|GATS, stromal antigen 3 opposite strand##BC056606|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##NM_001004351|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##BC038996|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##D38435|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##D38499|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC110395|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC044214|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1##BC067809|PMS2P1|5379|postmeiotic segregation increased 2 pseudogene 1	0.0	0.0	
chrX	69417165	69417288	reg1011234.p2	4.397	+	AK129500 NM_198512	-19891	+	TSC_hg19_v1_chrX_+_69353784 Y08915 AB528510 BT006736 CR456782 DQ892322 DQ895524	-63446	+	AK054596 BC004137 NM_001551 AK315660	-63887	+	NM_001013579 AB528120 AY947638	37298	+	BC096067 BC096068 BC096069 BC096070 BC095503 NM_002565	62358	-	BC012096 NM_004312 AF033105	70951	+	AK129500|DGAT2L6|347516|diacylglycerol O-acyltransferase 2-like 6##NM_198512|DGAT2L6|347516|diacylglycerol O-acyltransferase 2-like 6##Y08915|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##BT006736|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##CR456782|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##DQ892322|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##DQ895524|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##AK054596|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##BC004137|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##NM_001551|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##AK315660|IGBP1|3476|immunoglobulin (CD79A) binding protein 1##NM_001013579|AWAT1|158833|acyl-CoA wax alcohol acyltransferase 1##AY947638|AWAT1|158833|acyl-CoA wax alcohol acyltransferase 1##BC096067|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC096068|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC096069|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC096070|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC095503|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##NM_002565|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC012096|ARR3|407|arrestin 3, retinal (X-arrestin)##NM_004312|ARR3|407|arrestin 3, retinal (X-arrestin)##AF033105|ARR3|407|arrestin 3, retinal (X-arrestin)	0.0	0.0	
chr11	94289326	94289457	reg1011040.p1	4.396	+	TSC_hg19_v1_chr11_+_94277605 M58596	-11792	+	AK293616 NM_002033 TSC_hg19_v1_chr11_+_94277086 M58597 BC136373 BC136374	-12312	+	NM_001190462	-43697	+	NM_152431 AB079366 AK093475 AX748151 BC031060 DQ891240 DQ894425 AB590313 CU689100	11187	+	TSC_hg19_v1_chr11_+_94501528 BX648729 NM_130847 AK093699 AX748266 AF453742 BC037539 AK074084 AM393663	212198	+	TSC_hg19_v1_chr11_-_94706721 AK309042 AF110775 AF161497 AK225956 AK314900 BC032629 AJ250393 BC040946 BC006975	417331	-	M58596|FUT4|2526|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)##AK293616|PIWIL4|143689|piwi-like 4 (Drosophila)##NM_002033|FUT4|2526|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)##M58597|FUT4|2526|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)##BC136373|FUT4|2526|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)##BC136374|FUT4|2526|fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)##NM_001190462|LOC643037|643037|uncharacterized LOC643037##NM_152431|PIWIL4|143689|piwi-like 4 (Drosophila)##AB079366|PIWIL4|143689|piwi-like 4 (Drosophila)##AK093475|PIWIL4|143689|piwi-like 4 (Drosophila)##BC031060|PIWIL4|143689|piwi-like 4 (Drosophila)##DQ891240|PIWIL4|143689|piwi-like 4 (Drosophila)##DQ894425|PIWIL4|143689|piwi-like 4 (Drosophila)##BX648729|AMOTL1|154810|angiomotin like 1##NM_130847|AMOTL1|154810|angiomotin like 1##AK093699|AMOTL1|154810|angiomotin like 1##AF453742|AMOTL1|154810|angiomotin like 1##BC037539|AMOTL1|154810|angiomotin like 1##AK074084|AMOTL1|154810|angiomotin like 1##AM393663|AMOTL1|154810|angiomotin like 1##AK309042|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##AF110775|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##AF161497|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##AK225956|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##AK314900|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##BC032629|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##AJ250393|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##BC040946|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)##BC006975|CWC15|51503|CWC15 spliceosome-associated protein homolog (S. cerevisiae)	0.97363	0.0	denovo_WM_7:90:0.923
chr15	81315998	81316178	reg1004626.p1	4.396	+	TSC_hg19_v1_chr15_+_81293344 NM_022566	-22744	+	D42039 TSC_hg19_v1_chr15_-_81282157 AK301416 AK026606 BC009210 BC012746 AY359110 NM_015154	-33888	-	TSC_hg19_v1_chr15_+_81071711 AB103330 AK000465 AY581148 AY581149 AY585237 NM_018689 BC020256	-244367	+	AK302120 BC062471 NM_173528 AK307565	110539	+	AK124725 NM_001172128 AK124565 AK131530	173130	+	NM_172217 AY324389	201601	+	NM_022566|MESDC1|59274|mesoderm development candidate 1##D42039|MESDC2|23184|mesoderm development candidate 2##AK026606|MESDC2|23184|mesoderm development candidate 2##BC009210|MESDC2|23184|mesoderm development candidate 2##BC012746|MESDC2|23184|mesoderm development candidate 2##AY359110|MESDC2|23184|mesoderm development candidate 2##NM_015154|MESDC2|23184|mesoderm development candidate 2##AB103330|KIAA1199|57214|KIAA1199##AK000465|KIAA1199|57214|KIAA1199##AY581148|KIAA1199|57214|KIAA1199##AY581149|KIAA1199|57214|KIAA1199##NM_018689|KIAA1199|57214|KIAA1199##BC020256|KIAA1199|57214|KIAA1199##AK302120|C15orf26|161502|chromosome 15 open reading frame 26##BC062471|C15orf26|161502|chromosome 15 open reading frame 26##NM_173528|C15orf26|161502|chromosome 15 open reading frame 26##AK307565|C15orf26|161502|chromosome 15 open reading frame 26##AK124725|IL16|3603|interleukin 16##NM_001172128|IL16|3603|interleukin 16##AK124565|IL16|3603|interleukin 16##AK131530|IL16|3603|interleukin 16##NM_172217|IL16|3603|interleukin 16##AY324389|IL16|3603|interleukin 16	0.0	0.0	
chr16	17257811	17257893	reg1002111.p1	4.396	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-931322	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-931364	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-931370	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	306953	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1315539	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1540244	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	1.980779	0.0	denovo_WM_7:51:0.588	denovo_WM_7:52:0.325
chr19	11052778	11052908	reg1009246.p1	4.396	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-13386	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-13604	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-70407	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	18803	+	TSC_hg19_v1_chr19_+_11071717 BC007302	18872	+	TSC_hg19_v1_chr19_+_11071720 BC035916	18907	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.0	0.515987	CTCF.p2:37:0.516
chr6	2449073	2449170	reg1009942.p1	4.396	+	TSC_hg19_v1_chr6_+_2245995 AK023629	-203108	+	CR541929 CR541947 DQ892789 DQ896036 AF042377 TSC_hg19_v1_chr6_-_2245809 AK130651 AK313953 BC000117 NM_001500	-203323	-	AF040260 NM_001253846	-272897	-	NM_152554	186176	-	BX647582 NM_001012418 AK096893	302055	-	TSC_hg19_v1_chr6_+_2765561 AK315047	316459	+	CR541929|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541947|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ892789|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ896036|GMDS|2762|GDP-mannose 4,6-dehydratase##AF042377|GMDS|2762|GDP-mannose 4,6-dehydratase##AK130651|GMDS|2762|GDP-mannose 4,6-dehydratase##AK313953|GMDS|2762|GDP-mannose 4,6-dehydratase##BC000117|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001500|GMDS|2762|GDP-mannose 4,6-dehydratase##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_152554|C6orf195|154386|chromosome 6 open reading frame 195##BX647582|MYLK4|340156|myosin light chain kinase family, member 4##NM_001012418|MYLK4|340156|myosin light chain kinase family, member 4##AK096893|MYLK4|340156|myosin light chain kinase family, member 4##AK315047|WRNIP1|56897|Werner helicase interacting protein 1	0.996792	0.289266	denovo_WM_7:-5:0.709	CTCF.p2:52:0.289
chr6	33564915	33565063	reg1011833.p1	4.396	+	TSC_hg19_v1_chr6_-_33548037 AK303422 AK293547 NM_001188	-16946	-	U23765 U16811 TSC_hg19_v1_chr6_-_33547998 X84213 BC004431 BC032789 BC110337 AK091807 AK292093	-17074	-	TSC_hg19_v1_chr6_+_33422352 AK313571 AK122644 NM_152735 BC014978	-142617	+	TSC_hg19_v1_chr6_+_33589123 D26351 NM_002224 BC146646 U01062	24205	+	EF139858 AF086234 TSC_hg19_v1_chr6_-_33679476 AK311835	114474	-	TSC_hg19_v1_chr6_-_33679505 AY568085 BC006007 NM_032340	114524	-	AK303422|BAK1|578|BCL2-antagonist/killer 1##AK293547|BAK1|578|BCL2-antagonist/killer 1##NM_001188|BAK1|578|BCL2-antagonist/killer 1##U23765|BAK1|578|BCL2-antagonist/killer 1##U16811|BAK1|578|BCL2-antagonist/killer 1##X84213|BAK1|578|BCL2-antagonist/killer 1##BC004431|BAK1|578|BCL2-antagonist/killer 1##BC032789|BAK1|578|BCL2-antagonist/killer 1##BC110337|BAK1|578|BCL2-antagonist/killer 1##AK091807|BAK1|578|BCL2-antagonist/killer 1##AK292093|BAK1|578|BCL2-antagonist/killer 1##AK313571|ZBTB9|221504|zinc finger and BTB domain containing 9##AK122644|ZBTB9|221504|zinc finger and BTB domain containing 9##NM_152735|ZBTB9|221504|zinc finger and BTB domain containing 9##BC014978|ZBTB9|221504|zinc finger and BTB domain containing 9##D26351|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##NM_002224|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##BC146646|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##U01062|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##AF086234|C6orf125|84300|chromosome 6 open reading frame 125##AK311835|C6orf125|84300|chromosome 6 open reading frame 125##AY568085|C6orf125|84300|chromosome 6 open reading frame 125##BC006007|C6orf125|84300|chromosome 6 open reading frame 125##NM_032340|C6orf125|84300|chromosome 6 open reading frame 125	0.154841	0.0	
chr9	1011787	1011915	reg1014498.p1	4.396	+	AF193873 TSC_hg19_v1_chr9_+_977425	-34446	+	NM_021240 BC113584 BC117245	-34886	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-170088	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	38493	+	TSC_hg19_v1_chr9_+_1050370 Y19052	38519	+	AF130729 NM_181872	38758	+	AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2	0.12286	0.0	
chrX	69690818	69690970	reg1012534.p2	4.396	+	TSC_hg19_v1_chrX_+_69674948 AK303377 NM_001166278	-15960	+	TSC_hg19_v1_chrX_+_69672415 AK304020 AK316518	-18488	+	TSC_hg19_v1_chrX_+_69672143 AB033058 NM_020730	-18719	+	AK057523 AK292471 BC036016 NM_001003811 NM_031276	437669	-	AF320612 BC033816 AX721169 BC021242 AK074865 AK075014 NM_001048164 NM_032803	460055	-	BT007203 TSC_hg19_v1_chrX_-_70288224 BC080535 AF171229 BC103847 BC103848 BC020559 NM_013346 AK312977	597306	-	AK303377|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_001166278|DLG3|1741|discs, large homolog 3 (Drosophila)##AK304020|DLG3|1741|discs, large homolog 3 (Drosophila)##AK316518|DLG3|1741|discs, large homolog 3 (Drosophila)##AB033058|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_020730|DLG3|1741|discs, large homolog 3 (Drosophila)##AK057523|TEX11|56159|testis expressed 11##AK292471|TEX11|56159|testis expressed 11##BC036016|TEX11|56159|testis expressed 11##NM_001003811|TEX11|56159|testis expressed 11##NM_031276|TEX11|56159|testis expressed 11##AF320612|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##BC033816|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK074865|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##AK075014|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##NM_001048164|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##NM_032803|SLC7A3|84889|solute carrier family 7 (cationic amino acid transporter, y+ system), member 3##BT007203|SNX12|29934|sorting nexin 12##BC080535|SNX12|29934|sorting nexin 12##AF171229|SNX12|29934|sorting nexin 12##BC103847|SNX12|29934|sorting nexin 12##BC103848|SNX12|29934|sorting nexin 12##BC020559|SNX12|29934|sorting nexin 12##NM_013346|SNX12|29934|sorting nexin 12##AK312977|SNX12|29934|sorting nexin 12	0.581305	0.0	denovo_WM_7:-15:0.336
chr14	71180654	71180834	reg1001137.p1	4.395	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-72135	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-113367	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-113384	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	95065	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	193389	+	TSC_hg19_v1_chr14_+_71374441 BC140784	193707	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	0.986139	0.0	denovo_WM_7:-69:0.932
chr16	10869433	10869599	reg1001904.p4	4.395	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-31812	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-80751	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-195026	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	43032	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	101596	+	BC071683 TSC_hg19_v1_chr16_-_11036171	166650	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.987206	0.0	
chr16	18815022	18815088	reg1008558.p1	4.395	+	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-2273	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-13400	-	TSC_hg19_v1_chr16_-_18798077 AK127316	-16959	-	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	122676	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	180264	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	180503	+	AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7	1.999147	0.0	denovo_WM_7:-33:0.351	denovo_WM_7:-34:0.607
chr17	33393755	33393935	reg1006489.p1	4.395	+	TSC_hg19_v1_chr17_-_33390690 CR933651 NM_001017368	-3128	-	TSC_hg19_v1_chr17_+_33307530 NM_002311 NM_013975 BC068005 AK300363 AK308407 U40671 X84740 BC009026	-86257	+	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	-105256	+	TSC_hg19_v1_chr17_-_33416298 AK093112 AX747930 BC028424	22466	-	AB464124 DQ892318 DQ895520 BC002723 AB013341 AB016223 AB016224 AB016225 Y15572 AF034956 BC014422 TSC_hg19_v1_chr17_-_33446836 AK296241 BX647297 AK301249	52900	-	TSC_hg19_v1_chr17_-_33446880 NM_001142571 NM_002878 NM_133629	53030	-	CR933651|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_001017368|RFFL|117584|ring finger and FYVE-like domain containing 1##NM_002311|LIG3|3980|ligase III, DNA, ATP-dependent##NM_013975|LIG3|3980|ligase III, DNA, ATP-dependent##BC068005|LIG3|3980|ligase III, DNA, ATP-dependent##AK300363|LIG3|3980|ligase III, DNA, ATP-dependent##AK308407|LIG3|3980|ligase III, DNA, ATP-dependent##U40671|LIG3|3980|ligase III, DNA, ATP-dependent##X84740|LIG3|3980|ligase III, DNA, ATP-dependent##BC009026|LIG3|3980|ligase III, DNA, ATP-dependent##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830##AK093112|RFFL|117584|ring finger and FYVE-like domain containing 1##BC028424|RFFL|117584|ring finger and FYVE-like domain containing 1##DQ892318|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##DQ895520|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC002723|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB013341|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016223|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016224|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AB016225|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##Y15572|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AF034956|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BC014422|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK296241|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##BX647297|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK301249|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_001142571|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_002878|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_133629|RAD51D|5892|RAD51 homolog D (S. cerevisiae)	0.990447	0.0	denovo_WM_7:52:0.814
chr5	180676631	180676811	reg1008554.p1	4.395	+	BC014256 TSC_hg19_v1_chr5_-_180670905 BC010119 BC019093 BC032006 BC035460 BC019362 BC014788 BC000366 M24194 BC021993 AK095666 AK301468 D28398 AK310916 AK222488 NM_006098 AK303316 BC000214	-5818	-	BC029996 AK301029 CR456978 CR541909 GU727632 CU689260 AM393661 DQ891422 DQ894596 AY336089 AB463707 TSC_hg19_v1_chr5_-_180670867 BC017287	-5920	-	TSC_hg19_v1_chr5_+_180650709 BC090953	-25996	+	AK054802 TSC_hg19_v1_chr5_-_180688115 BC007372 NM_032765 AB209243	11404	-	TSC_hg19_v1_chr5_+_180688213 BC016291	11506	+	BC137547 BC137568 NM_001005221 NM_001005224 NM_001005277	117556	+	BC014256|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC010119|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019093|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC032006|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC035460|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC019362|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC014788|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000366|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##M24194|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC021993|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK095666|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK301468|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##D28398|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK310916|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK222488|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##NM_006098|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK303316|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC000214|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC029996|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AK301029|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##CR456978|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##CR541909|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##GU727632|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AM393661|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##DQ891422|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##DQ894596|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##AY336089|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC017287|GNB2L1|10399|guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1##BC090953|TRIM41|90933|tripartite motif containing 41##AK054802|TRIM52|84851|tripartite motif containing 52##BC007372|TRIM52|84851|tripartite motif containing 52##NM_032765|TRIM52|84851|tripartite motif containing 52##AB209243|TRIM52|84851|tripartite motif containing 52##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16	0.995271	0.0	denovo_WM_7:-34:0.723	denovo_WM_7:-36:0.231
chr9	107370751	107370861	reg1007417.p2	4.395	+	AB529292 NM_001004481 BC136824 BC136826	-2878	-	NM_001004482 BC136842 BC136843	-9066	-	AB463957 NM_001004483	-39358	+	AB463958 NM_001001956	9678	-	BC140916 AB587601 NM_001004484	85874	+	TSC_hg19_v1_chr9_+_107509977 BC005935 NM_015469 AK301410 AF161417 AK024015 AL117557 BC045830 CU675195	139204	+	NM_001004481|OR13C2|392376|olfactory receptor, family 13, subfamily C, member 2##BC136824|OR13C2|392376|olfactory receptor, family 13, subfamily C, member 2##BC136826|OR13C2|392376|olfactory receptor, family 13, subfamily C, member 2##NM_001004482|OR13C5|138799|olfactory receptor, family 13, subfamily C, member 5##BC136842|OR13C5|138799|olfactory receptor, family 13, subfamily C, member 5##BC136843|OR13C5|138799|olfactory receptor, family 13, subfamily C, member 5##NM_001004483|OR13C8|138802|olfactory receptor, family 13, subfamily C, member 8##NM_001001956|OR13C9|286362|olfactory receptor, family 13, subfamily C, member 9##BC140916|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##NM_001004484|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##BC005935|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##NM_015469|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK301410|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AF161417|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK024015|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AL117557|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##BC045830|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)	0.0	0.0	
chr1	12104255	12104354	reg1006359.p1	4.394	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-24734	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-24770	+	FJ618905 NM_021933	-25006	+	M83554 NM_001243 BC136400 BC171762 S75768	19240	+	D86042 BC063482 NM_152942 BC073839 BC141804	81712	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	122757	+	AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##FJ618905|MIIP|60672|migration and invasion inhibitory protein##NM_021933|MIIP|60672|migration and invasion inhibitory protein##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.997885	0.0	denovo_WM_7:-39:0.711	denovo_WM_7:-40:0.275
chr16	2073243	2073344	reg1011366.p1	4.394	+	AB084276 TSC_hg19_v1_chr16_+_2069788	-3528	+	NM_001099456 AL365521	-3761	+	AK024487 TSC_hg19_v1_chr16_-_2059805	-13473	-	TSC_hg19_v1_chr16_+_2076902 NM_001130012 NM_004785 BC106001 BC014513 BC069014 Z50150 U82108 AF004900 AF035771	3613	+	NM_001252073 NM_001252075 NM_001252076 TSC_hg19_v1_chr16_+_2083294	9987	+	Y09687 TSC_hg19_v1_chr16_-_2097836 BC000391 BC003014 U81285 AB001575 AB528626 AK298247 NM_002528 U79718	24549	-	AB084276|NPW|283869|neuropeptide W##NM_001099456|NPW|283869|neuropeptide W##AL365521|NPW|283869|neuropeptide W##AK024487|ZNF598|90850|zinc finger protein 598##NM_001130012|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##NM_004785|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##BC106001|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##BC014513|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##BC069014|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##Z50150|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##U82108|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##AF004900|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##AF035771|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##NM_001252073|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##NM_001252075|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##NM_001252076|SLC9A3R2|9351|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2##Y09687|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##BC000391|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##BC003014|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##U81285|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##AB001575|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##NM_002528|NTHL1|4913|nth endonuclease III-like 1 (E. coli)##U79718|NTHL1|4913|nth endonuclease III-like 1 (E. coli)	0.0	0.01625	
chr17	17095976	17096102	reg1009192.p2	4.394	+	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	-150075	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-220635	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-502435	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	13574	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	13618	-	TSC_hg19_v1_chr17_-_17140464 AF517523 BC015687	44406	-	NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6##AF517523|FLCN|201163|folliculin##BC015687|FLCN|201163|folliculin	0.0	0.0	
chr17	33863792	33863944	reg1008381.p1	4.394	+	NM_001195790	-49111	-	TSC_hg19_v1_chr17_-_33775787 CR749630 AK056514 AL832726 AK122750 NM_144682	-88057	-	AK001122 BC035605 NM_018042	-104338	-	BC140847 BC157877 BC157879 NM_001129820	21239	-	BC031085 AK312635 BC015751 U91521 NM_000286	41737	-	TSC_hg19_v1_chr17_+_33914281 NM_001030006 NM_001282 M34175 AK295667	50422	+	NM_001195790|SLFN12L|100506736|schlafen family member 12-like##CR749630|SLFN13|146857|schlafen family member 13##AK056514|SLFN13|146857|schlafen family member 13##AL832726|SLFN13|146857|schlafen family member 13##AK122750|SLFN13|146857|schlafen family member 13##NM_144682|SLFN13|146857|schlafen family member 13##AK001122|SLFN12|55106|schlafen family member 12##BC035605|SLFN12|55106|schlafen family member 12##NM_018042|SLFN12|55106|schlafen family member 12##BC140847|SLFN14|342618|schlafen family member 14##BC157877|SLFN14|342618|schlafen family member 14##BC157879|SLFN14|342618|schlafen family member 14##NM_001129820|SLFN14|342618|schlafen family member 14##BC031085|PEX12|5193|peroxisomal biogenesis factor 12##AK312635|PEX12|5193|peroxisomal biogenesis factor 12##BC015751|PEX12|5193|peroxisomal biogenesis factor 12##U91521|PEX12|5193|peroxisomal biogenesis factor 12##NM_000286|PEX12|5193|peroxisomal biogenesis factor 12##NM_001030006|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##NM_001282|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##M34175|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK295667|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit	0.993188	0.0	denovo_WM_7:-30:0.280	denovo_WM_7:-31:0.303	denovo_WM_7:-32:0.308
chr2	196202458	196202634	reg1013403.p1	4.394	+	BC008973 AB017269 AY358907 AK074632 AL157430 AF179274 NM_016192 TSC_hg19_v1_chr2_-_193059657 AF242222 AK222691 AK315376	-3142917	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	-3143232	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	-3490575	-	BC029413 NM_001127257 CR749813	319029	+	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	319362	+	AB463018 AF327442 AK094515 NM_018897 AB023161	730949	-	BC008973|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB017269|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AY358907|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074632|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AL157430|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF179274|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##NM_016192|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AF242222|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK222691|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK315376|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7	0.986238	0.0	denovo_WM_7:-15:0.763
chr7	23579132	23579265	reg1002454.p1	4.394	+	CU677835 DQ892442 DQ895653 AB528532 TSC_hg19_v1_chr7_-_23571604 BC069011 BC017094 U53209 AB097048 AK300565 AK311687 AK314801 AK300741 AK310719 AK298815 NM_013293	-7634	-	TSC_hg19_v1_chr7_+_23530136 BC026177	-49031	+	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	-69200	-	TSC_hg19_v1_chr7_+_23637005 NM_138771 AK289911 AY358713 AX721042	57817	+	TSC_hg19_v1_chr7_+_23719821 NM_001127364 NM_001127365 NM_199136 BC042034 AK127774 AL832127 BC026000 BC063130 CU687660	140625	+	AK057271 NM_001122833 NM_031414 BC047506 BC059374 BC033018 AF285599 AK292474 AK302689 AF332194 NM_032944	170718	+	DQ892442|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##DQ895653|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC069011|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC017094|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##U53209|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AB097048|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300565|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK311687|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK314801|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK300741|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK310719|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##AK298815|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##NM_013293|TRA2A|29896|transformer 2 alpha homolog (Drosophila)##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_138771|CCDC126|90693|coiled-coil domain containing 126##AK289911|CCDC126|90693|coiled-coil domain containing 126##AY358713|CCDC126|90693|coiled-coil domain containing 126##NM_001127364|C7orf46|340277|chromosome 7 open reading frame 46##NM_001127365|C7orf46|340277|chromosome 7 open reading frame 46##NM_199136|C7orf46|340277|chromosome 7 open reading frame 46##BC042034|C7orf46|340277|chromosome 7 open reading frame 46##AK127774|C7orf46|340277|chromosome 7 open reading frame 46##AL832127|C7orf46|340277|chromosome 7 open reading frame 46##BC026000|C7orf46|340277|chromosome 7 open reading frame 46##BC063130|C7orf46|340277|chromosome 7 open reading frame 46##AK057271|STK31|56164|serine/threonine kinase 31##NM_001122833|STK31|56164|serine/threonine kinase 31##NM_031414|STK31|56164|serine/threonine kinase 31##BC047506|STK31|56164|serine/threonine kinase 31##BC059374|STK31|56164|serine/threonine kinase 31##BC033018|STK31|56164|serine/threonine kinase 31##AF285599|STK31|56164|serine/threonine kinase 31##AK292474|STK31|56164|serine/threonine kinase 31##AK302689|STK31|56164|serine/threonine kinase 31##AF332194|STK31|56164|serine/threonine kinase 31##NM_032944|STK31|56164|serine/threonine kinase 31	0.900665	0.0	denovo_WM_7:-21:0.254	denovo_WM_7:-23:0.324
chr7	70229326	70229474	reg1006452.p1	4.394	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1164812	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1165071	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1165564	+	TSC_hg19_v1_chr7_+_70231164 AK296981	1805	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	368388	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1572378	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.066416	0.0	
chr8	62156674	62156794	reg1012388.p2	4.394	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-565332	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-565446	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-726984	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	43816	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	445612	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	470284	-	BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase	0.891535	0.81254	CTCF.p2:-16:0.813	denovo_WM_7:54:0.786
chr9	138802197	138802295	reg1011696.p1	4.394	+	TSC_hg19_v1_chr9_-_138799245 NM_015447	-3085	-	AK127272 NM_020822 AB037843 BC136618 BC144304 BC171770	-208202	+	AY884306 AY902244 BC031861 NM_001012415 NM_001101677	-210901	-	CU678830 DQ892567 DQ895782 TSC_hg19_v1_chr9_-_138853062 BC011822	50793	-	TSC_hg19_v1_chr9_-_138853220 AF176796 BC004967 NM_016172	50957	-	TSC_hg19_v1_chr9_-_138987136 BC015649 AK129748 NM_144653	184889	-	NM_015447|CAMSAP1|157922|calmodulin regulated spectrin-associated protein 1##AK127272|KCNT1|57582|potassium channel, subfamily T, member 1##NM_020822|KCNT1|57582|potassium channel, subfamily T, member 1##AB037843|KCNT1|57582|potassium channel, subfamily T, member 1##BC136618|KCNT1|57582|potassium channel, subfamily T, member 1##BC144304|KCNT1|57582|potassium channel, subfamily T, member 1##BC171770|KCNT1|57582|potassium channel, subfamily T, member 1##AY884306|SOHLH1|402381|spermatogenesis and oogenesis specific basic helix-loop-helix 1##AY902244|SOHLH1|402381|spermatogenesis and oogenesis specific basic helix-loop-helix 1##BC031861|SOHLH1|402381|spermatogenesis and oogenesis specific basic helix-loop-helix 1##NM_001012415|SOHLH1|402381|spermatogenesis and oogenesis specific basic helix-loop-helix 1##NM_001101677|SOHLH1|402381|spermatogenesis and oogenesis specific basic helix-loop-helix 1##DQ892567|UBAC1|10422|UBA domain containing 1##DQ895782|UBAC1|10422|UBA domain containing 1##BC011822|UBAC1|10422|UBA domain containing 1##AF176796|UBAC1|10422|UBA domain containing 1##BC004967|UBAC1|10422|UBA domain containing 1##NM_016172|UBAC1|10422|UBA domain containing 1##BC015649|NACC2|138151|NACC family member 2, BEN and BTB (POZ) domain containing##NM_144653|NACC2|138151|NACC family member 2, BEN and BTB (POZ) domain containing	0.996086	0.0	
chr11	62361119	62361217	reg1004533.p2	4.393	+	TSC_hg19_v1_chr11_-_62359020 BC110910 BC128263 AK074061 AK026000 AK292610 NM_022830	-2130	-	TSC_hg19_v1_chr11_+_62341675 AK125351	-19502	+	TSC_hg19_v1_chr11_-_62341364 NM_001404	-19765	-	TSC_hg19_v1_chr11_-_62368746 AK301569	7565	-	AF295807 AB527681 TSC_hg19_v1_chr11_-_62368932	7761	-	TSC_hg19_v1_chr11_-_62369137 BC023656 BC053650	7969	-	BC110910|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##BC128263|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##AK026000|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##AK292610|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##NM_022830|TUT1|64852|terminal uridylyl transferase 1, U6 snRNA-specific##NM_001404|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK301569|MTA2|9219|metastasis associated 1 family, member 2##AF295807|MTA2|9219|metastasis associated 1 family, member 2##BC023656|MTA2|9219|metastasis associated 1 family, member 2##BC053650|MTA2|9219|metastasis associated 1 family, member 2	0.0	0.88298	CTCF.p2:28:0.883
chr2	198767963	198768100	reg1009772.p1	4.393	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	-98661	+	NM_197970 AK302817	-117045	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-117991	-	TSC_hg19_v1_chr2_-_200213802 AK025127	1445819	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	1552771	-	TSC_hg19_v1_chr2_-_200322238 AJ438951	1554219	-	AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2##AJ438951|SATB2|23314|SATB homeobox 2	0.0	0.0	
chr6	37243589	37243736	reg1015690.p2	4.393	+	TSC_hg19_v1_chr6_-_37225916 BC009625 NM_001162900	-17735	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	-18063	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	-18276	-	TSC_hg19_v1_chr6_+_37252169 BC063523	8528	+	TSC_hg19_v1_chr6_+_37321758 NM_003958 NM_183078	78096	+	TSC_hg19_v1_chr6_+_37321801 BC007517	78146	+	BC009625|TMEM217|221468|transmembrane protein 217##NM_001162900|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##BC063523|TBC1D22B|55633|TBC1 domain family, member 22B##NM_003958|RNF8|9025|ring finger protein 8##NM_183078|RNF8|9025|ring finger protein 8##BC007517|RNF8|9025|ring finger protein 8	1.50382	0.0	denovo_WM_7:71:0.378	denovo_WM_7:87:0.828
chr9	113571651	113571767	reg1013468.p2	4.393	+	NM_001166280 NM_001166281 NM_005592 AF006464 BC109098 BC109099 EU832778 EU832779 GQ129313	-140593	+	TSC_hg19_v1_chr9_-_113342011 AJ619977 AY243503 AK122605 BC030816 NM_153366	-229645	-	HQ258720 AF305830 BC130549 BC130551 BC144461 BC035743 NM_001003936	-471609	-	AK299279 TSC_hg19_v1_chr9_-_113800499 BC036034 AK022808 NM_001401 NM_057159	228703	-	AK298590 TSC_hg19_v1_chr9_-_113801086	229324	-	TSC_hg19_v1_chr9_-_113801481 AK290287	229793	-	NM_001166280|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##NM_001166281|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##NM_005592|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##AF006464|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##BC109098|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##BC109099|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##EU832778|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##EU832779|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##GQ129313|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##AJ619977|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##AY243503|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##AK122605|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##BC030816|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##NM_153366|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##HQ258720|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##AF305830|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC130549|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC130551|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC144461|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC035743|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##NM_001003936|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##AK299279|LPAR1|1902|lysophosphatidic acid receptor 1##BC036034|LPAR1|1902|lysophosphatidic acid receptor 1##AK022808|LPAR1|1902|lysophosphatidic acid receptor 1##NM_001401|LPAR1|1902|lysophosphatidic acid receptor 1##NM_057159|LPAR1|1902|lysophosphatidic acid receptor 1##AK298590|LPAR1|1902|lysophosphatidic acid receptor 1##AK290287|LPAR1|1902|lysophosphatidic acid receptor 1	1.04867	0.0	denovo_WM_7:26:0.494	denovo_WM_7:27:0.494
chr1	101866417	101866553	reg1012063.p1	4.392	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-163915	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-164104	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-375052	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	596002	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	596305	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1630298	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	0.999644	0.0	
chr11	72854582	72854717	reg1014237.p2	4.392	+	AK296376 TSC_hg19_v1_chr11_-_72853112 AK297928 AB018312 NM_014824	-1600	-	BC142718 BC146660 TSC_hg19_v1_chr11_+_72525476 AK303270 AK091151 AX746810 AK093017 AX747859 BC108672	-329167	+	BC137489 BC137490 TSC_hg19_v1_chr11_+_72525455 BC069189 NM_033388 AK090597 AX746524	-329244	+	TSC_hg19_v1_chr11_+_72929328 BC012104 NM_002564 NM_176072	74695	+	TSC_hg19_v1_chr11_+_72929414 U07225 BC028135 NM_176071	74797	+	AK313942 TSC_hg19_v1_chr11_+_72929608	74967	+	AK296376|FCHSD2|9873|FCH and double SH3 domains 2##AK297928|FCHSD2|9873|FCH and double SH3 domains 2##AB018312|FCHSD2|9873|FCH and double SH3 domains 2##NM_014824|FCHSD2|9873|FCH and double SH3 domains 2##BC142718|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC146660|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK303270|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK091151|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK093017|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC108672|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137489|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC137490|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC069189|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##NM_033388|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##AK090597|ATG16L2|89849|ATG16 autophagy related 16-like 2 (S. cerevisiae)##BC012104|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_002564|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_176072|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##U07225|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##BC028135|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##NM_176071|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2##AK313942|P2RY2|5029|purinergic receptor P2Y, G-protein coupled, 2	0.99243	0.0	denovo_WM_7:0:0.496	denovo_WM_7:-1:0.496
chr12	12704304	12704454	reg1010626.p1	4.392	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-194214	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-201207	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-284537	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	11021	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	60416	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	60504	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	1.377662	0.0	
chr1	46528472	46528574	reg1012469.p1	4.392	+	TSC_hg19_v1_chr1_+_46379267 AK027123 AK309510	-149261	+	TSC_hg19_v1_chr1_+_46269283 AB047005 NM_015112 BC065499	-259225	+	BC032544 TSC_hg19_v1_chr1_-_46216325 AK023880 NM_001145349 NM_005897	-312124	-	TSC_hg19_v1_chr1_-_46598298 CR749649 BC021622 NM_003629 EU832448 EU832531 BX537388 BC094768 AK313726 NM_001114172	69955	-	NM_005727 AK313774	112230	+	TSC_hg19_v1_chr1_+_46646203 BC007290 BC000695 BC013404 AF065388 AF133425	117687	+	AK027123|MAST2|23139|microtubule associated serine/threonine kinase 2##AK309510|MAST2|23139|microtubule associated serine/threonine kinase 2##AB047005|MAST2|23139|microtubule associated serine/threonine kinase 2##NM_015112|MAST2|23139|microtubule associated serine/threonine kinase 2##BC065499|MAST2|23139|microtubule associated serine/threonine kinase 2##BC032544|IPP|3652|intracisternal A particle-promoted polypeptide##AK023880|IPP|3652|intracisternal A particle-promoted polypeptide##NM_001145349|IPP|3652|intracisternal A particle-promoted polypeptide##NM_005897|IPP|3652|intracisternal A particle-promoted polypeptide##CR749649|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC021622|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_003629|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832448|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832531|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BX537388|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC094768|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AK313726|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_001114172|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_005727|TSPAN1|10103|tetraspanin 1##AK313774|TSPAN1|10103|tetraspanin 1##BC007290|TSPAN1|10103|tetraspanin 1##BC000695|TSPAN1|10103|tetraspanin 1##BC013404|TSPAN1|10103|tetraspanin 1##AF065388|TSPAN1|10103|tetraspanin 1##AF133425|TSPAN1|10103|tetraspanin 1	0.0	0.0	
chr17	76313342	76313522	reg1003936.p2	4.392	+	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-85969	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-103035	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	-103133	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	42725	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	61298	+	NM_173628	260043	-	BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17	0.0	0.0	
chr19	17483748	17483893	reg1008465.p1	4.392	+	NM_001128855 NM_032620 NM_133644 AF360742 AF360743 AY078987 AY078988 AK298485 AK027606 AK291929 BC019261 TSC_hg19_v1_chr19_+_17448396 BC017207 AK311442 AF360744 DQ892217 DQ895413 CU676414 CU677863	-35448	+	NM_001195422 AK297953	-38021	+	BC037307 TSC_hg19_v1_chr19_-_17445581 AB046843 NM_020959	-38184	-	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	4312	-	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	32599	-	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	32746	+	NM_001128855|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_032620|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_133644|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360742|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360743|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078987|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078988|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK298485|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK027606|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK291929|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC019261|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC017207|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK311442|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360744|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ892217|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ895413|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_001195422|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK297953|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC037307|ANO8|57719|anoctamin 8##AB046843|ANO8|57719|anoctamin 8##NM_020959|ANO8|57719|anoctamin 8##AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535	2.49572	0.0	denovo_WM_7:61:0.565	denovo_WM_7:76:0.405	denovo_WM_7:79:0.451
chr19	52097592	52097692	reg1011302.p1	4.392	+	NM_007147 BC007778 AK292687 BC052997 D50419	-23095	+	U71382 BC140798 BC035359 AK300182 AK300170 AK308174 AK309903 D86358 D86359 NM_001177547 NM_001177548 NM_001177549 NM_001245 NM_198845 NM_198846	-62642	-	CU690206 AY358140 AF282256 AK225931 BC035809 AK095919 NM_053003 TSC_hg19_v1_chr19_-_52005055	-92613	-	DQ892433 AF170484 BC029896 AK225753 U71383 NM_003830	36015	-	AY358369 AY854038 AK298284 NM_001098612	52427	-	NM_001523 U59269 BC035837 AM904814	129590	-	NM_007147|ZNF175|7728|zinc finger protein 175##BC007778|ZNF175|7728|zinc finger protein 175##AK292687|ZNF175|7728|zinc finger protein 175##BC052997|ZNF175|7728|zinc finger protein 175##D50419|ZNF175|7728|zinc finger protein 175##U71382|SIGLEC6|946|sialic acid binding Ig-like lectin 6##BC140798|SIGLEC6|946|sialic acid binding Ig-like lectin 6##BC035359|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK300182|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK300170|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK308174|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AK309903|SIGLEC6|946|sialic acid binding Ig-like lectin 6##D86358|SIGLEC6|946|sialic acid binding Ig-like lectin 6##D86359|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001177547|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001177548|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001177549|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_001245|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_198845|SIGLEC6|946|sialic acid binding Ig-like lectin 6##NM_198846|SIGLEC6|946|sialic acid binding Ig-like lectin 6##AY358140|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##AF282256|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##AK225931|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##BC035809|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##AK095919|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##NM_053003|SIGLEC12|89858|sialic acid binding Ig-like lectin 12 (gene/pseudogene)##DQ892433|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##AF170484|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##BC029896|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##AK225753|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##U71383|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##NM_003830|SIGLEC5|8778|sialic acid binding Ig-like lectin 5##AY854038|SIGLEC14|100049587|sialic acid binding Ig-like lectin 14##AK298284|SIGLEC14|100049587|sialic acid binding Ig-like lectin 14##NM_001098612|SIGLEC14|100049587|sialic acid binding Ig-like lectin 14##NM_001523|HAS1|3036|hyaluronan synthase 1##U59269|HAS1|3036|hyaluronan synthase 1##BC035837|HAS1|3036|hyaluronan synthase 1##AM904814|HAS1|3036|hyaluronan synthase 1	0.0	0.0	
chr22	34249872	34250052	reg1007819.p1	4.392	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-795607	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-847236	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-1052210	+	AJ007583 AB011181 NM_004737 NM_133642	66408	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1212187	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1403514	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.0	0.0	
chr4	86678198	86678288	reg1000938.p1	4.392	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-281900	+	NM_014991	-790700	-	NM_001263 U65887	-1174150	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	21605	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	21655	+	AK307423 TSC_hg19_v1_chr4_+_86749064	70811	+	NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24	0.159646	0.762273	
chr6_ssto_hap7	4841399	4841482	reg1013427.p1	4.392	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999016	0.0	
chr7	158441525	158441596	reg1012486.p1	4.392	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	-61107	-	TSC_hg19_v1_chr7_+_157647233 BC034557	-794286	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-1311849	+	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	55917	-	TSC_hg19_v1_chr7_-_158611303 AK126214	169810	-	TSC_hg19_v1_chr7_-_158622198 AB033054	180631	-	DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK126214|ESYT2|57488|extended synaptotagmin-like protein 2##AB033054|ESYT2|57488|extended synaptotagmin-like protein 2	0.0	0.0	
chr10	45428268	45428416	reg1015524.p1	4.391	+	BX538120 BC127789 BC127790 NM_001123376 AB235418	-21624	+	CR450283 AB385200 AB463489 DQ345518 DQ345517 DQ345519 DQ345520 AY644456 BC039893 U16752 AY874118 L36033 L36034 TSC_hg19_v1_chr10_-_44880546 BC031072 AK311814 AK292628 NM_000609 NM_001033886 NM_001178134 NM_199168	-547843	-	TSC_hg19_v1_chr10_-_44144330 U69645 AK312132 NM_006973 AK309483	-1284036	-	AK056518 TSC_hg19_v1_chr10_-_45455156	26805	-	TSC_hg19_v1_chr10_+_45455249 AY216713 AY216714 AY216715 AY216716 NM_032023 BC032593 AF260335 AK311531	26890	+	BC011402 AB025244 TSC_hg19_v1_chr10_-_45474258 AK002191 AK098476 AL136653 AB022718 AK300839 AK312496 NM_007021	45927	-	BX538120|TMEM72|643236|transmembrane protein 72##BC127789|TMEM72|643236|transmembrane protein 72##BC127790|TMEM72|643236|transmembrane protein 72##NM_001123376|TMEM72|643236|transmembrane protein 72##AB235418|TMEM72|643236|transmembrane protein 72##CR450283|CXCL12|6387|chemokine (C-X-C motif) ligand 12##DQ345518|CXCL12|6387|chemokine (C-X-C motif) ligand 12##DQ345517|CXCL12|6387|chemokine (C-X-C motif) ligand 12##DQ345519|CXCL12|6387|chemokine (C-X-C motif) ligand 12##DQ345520|CXCL12|6387|chemokine (C-X-C motif) ligand 12##AY644456|CXCL12|6387|chemokine (C-X-C motif) ligand 12##BC039893|CXCL12|6387|chemokine (C-X-C motif) ligand 12##U16752|CXCL12|6387|chemokine (C-X-C motif) ligand 12##AY874118|CXCL12|6387|chemokine (C-X-C motif) ligand 12##L36033|CXCL12|6387|chemokine (C-X-C motif) ligand 12##L36034|CXCL12|6387|chemokine (C-X-C motif) ligand 12##BC031072|CXCL12|6387|chemokine (C-X-C motif) ligand 12##AK311814|CXCL12|6387|chemokine (C-X-C motif) ligand 12##AK292628|CXCL12|6387|chemokine (C-X-C motif) ligand 12##NM_000609|CXCL12|6387|chemokine (C-X-C motif) ligand 12##NM_001033886|CXCL12|6387|chemokine (C-X-C motif) ligand 12##NM_001178134|CXCL12|6387|chemokine (C-X-C motif) ligand 12##NM_199168|CXCL12|6387|chemokine (C-X-C motif) ligand 12##U69645|ZNF32|7580|zinc finger protein 32##AK312132|ZNF32|7580|zinc finger protein 32##NM_006973|ZNF32|7580|zinc finger protein 32##AK056518|TMEM72-AS1|220980|TMEM72 antisense RNA 1 (non-protein coding)##AY216713|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216714|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216715|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AY216716|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##NM_032023|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##BC032593|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AF260335|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##AK311531|RASSF4|83937|Ras association (RalGDS/AF-6) domain family member 4##BC011402|C10orf10|11067|chromosome 10 open reading frame 10##AB025244|C10orf10|11067|chromosome 10 open reading frame 10##AK002191|C10orf10|11067|chromosome 10 open reading frame 10##AK098476|C10orf10|11067|chromosome 10 open reading frame 10##AL136653|C10orf10|11067|chromosome 10 open reading frame 10##AB022718|C10orf10|11067|chromosome 10 open reading frame 10##AK300839|C10orf10|11067|chromosome 10 open reading frame 10##AK312496|C10orf10|11067|chromosome 10 open reading frame 10##NM_007021|C10orf10|11067|chromosome 10 open reading frame 10	0.0	0.967498	CTCF.p2:-18:0.967
chr16	30075567	30075703	reg1010677.p2	4.391	+	BC016800 TSC_hg19_v1_chr16_+_30075534 NM_184043 BC013614	-49	+	TSC_hg19_v1_chr16_+_30075504 M11560	-161	+	TSC_hg19_v1_chr16_+_30064512 AK098778 BC004333 AK308495	-11135	+	TSC_hg19_v1_chr16_+_30075771 NM_001127617	131	+	NM_001243177 NM_184041 TSC_hg19_v1_chr16_+_30077081 D28356	1403	+	TSC_hg19_v1_chr16_+_30077141 X05236 AK026577	1497	+	BC016800|ALDOA|226|aldolase A, fructose-bisphosphate##NM_184043|ALDOA|226|aldolase A, fructose-bisphosphate##BC013614|ALDOA|226|aldolase A, fructose-bisphosphate##M11560|ALDOA|226|aldolase A, fructose-bisphosphate##AK098778|ALDOA|226|aldolase A, fructose-bisphosphate##BC004333|ALDOA|226|aldolase A, fructose-bisphosphate##AK308495|ALDOA|226|aldolase A, fructose-bisphosphate##NM_001127617|ALDOA|226|aldolase A, fructose-bisphosphate##NM_001243177|ALDOA|226|aldolase A, fructose-bisphosphate##NM_184041|ALDOA|226|aldolase A, fructose-bisphosphate##D28356|ALDOA|226|aldolase A, fructose-bisphosphate##X05236|ALDOA|226|aldolase A, fructose-bisphosphate##AK026577|ALDOA|226|aldolase A, fructose-bisphosphate	0.0	0.0	
chr17	80170561	80170741	reg1000892.p2	4.391	+	TSC_hg19_v1_chr17_-_80056105 BC063242 NM_004104	-114547	-	TSC_hg19_v1_chr17_-_80056081 AB209988 U29344	-114584	-	TSC_hg19_v1_chr17_-_80054282 AY451392 U26644 AB384663	-116379	-	TSC_hg19_v1_chr17_-_80170705 BC040264 BC110997 NM_198082	84	-	NM_001042422 NM_001206950 TSC_hg19_v1_chr17_+_80186285	15698	+	NM_004207 TSC_hg19_v1_chr17_+_80186920 AK127090 AK223040 U81800	16265	+	BC063242|FASN|2194|fatty acid synthase##NM_004104|FASN|2194|fatty acid synthase##AB209988|FASN|2194|fatty acid synthase##U29344|FASN|2194|fatty acid synthase##AY451392|FASN|2194|fatty acid synthase##U26644|FASN|2194|fatty acid synthase##BC040264|CCDC57|284001|coiled-coil domain containing 57##BC110997|CCDC57|284001|coiled-coil domain containing 57##NM_198082|CCDC57|284001|coiled-coil domain containing 57##NM_001042422|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##NM_001206950|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##NM_004207|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##AK223040|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)##U81800|SLC16A3|9123|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)	0.0	0.0	
chr18	60823278	60823427	reg1010617.p1	4.391	+	TSC_hg19_v1_chr18_-_60795898 AF401211	-27417	-	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-439044	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-439426	+	BC027258 NM_000633 NM_000657	163208	-	TSC_hg19_v1_chr18_-_60986977 X06487	163641	-	TSC_hg19_v1_chr18_-_60987309 M13994	163934	-	AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2##M13994|BCL2|596|B-cell CLL/lymphoma 2	0.998234	0.0	
chr4	114486191	114486307	reg1012998.p1	4.391	+	TSC_hg19_v1_chr4_+_114214102 AK294720	-272130	+	NM_001148 NM_020977 TSC_hg19_v1_chr4_+_113970812 AK299767 AK307601 X56958 AB385222 Z26634	-515415	+	TSC_hg19_v1_chr4_+_113739259 AK095596 NM_001127493 AK299815 BX537758	-746948	+	AB384909 AF071569 AY987011 DQ895255 EU176241 BC032784 TSC_hg19_v1_chr4_-_114682321	196032	-	TSC_hg19_v1_chr4_-_114682341 AK294517	196107	-	BC022558 TSC_hg19_v1_chr4_-_114682567	196317	-	AK294720|ANK2|287|ankyrin 2, neuronal##NM_001148|ANK2|287|ankyrin 2, neuronal##NM_020977|ANK2|287|ankyrin 2, neuronal##AK299767|ANK2|287|ankyrin 2, neuronal##AK307601|ANK2|287|ankyrin 2, neuronal##X56958|ANK2|287|ankyrin 2, neuronal##Z26634|ANK2|287|ankyrin 2, neuronal##AK095596|ANK2|287|ankyrin 2, neuronal##NM_001127493|ANK2|287|ankyrin 2, neuronal##AK299815|ANK2|287|ankyrin 2, neuronal##BX537758|ANK2|287|ankyrin 2, neuronal##AF071569|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AY987011|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##DQ895255|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##EU176241|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##BC032784|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK294517|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##BC022558|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta	0.0	0.0	
chr4	57332558	57332627	reg1004370.p1	4.391	+	TSC_hg19_v1_chr4_+_57302451 X53793 BT006988 CU679667 DQ890605 DQ893056 DQ893776 DQ896305 AK308527	-30055	+	TSC_hg19_v1_chr4_+_57302425 D28431	-30174	+	NM_001079524 NM_001079525 TSC_hg19_v1_chr4_+_57302303 CR749824 BC019255	-30287	+	TSC_hg19_v1_chr4_+_57333762 NM_006947 BC017057 BC056901 BC105583	1169	+	TSC_hg19_v1_chr4_+_57333798 BC040134 BX537991 AF038851 BC046143 BC065018 AF069765 BC032609 AK225430 AK307397 AB590681 AF077019	1198	+	AY439003 NM_206919	38782	+	X53793|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BT006988|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ890605|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893056|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893776|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ896305|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK308527|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##D28431|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079524|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079525|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##CR749824|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC019255|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_006947|SRP72|6731|signal recognition particle 72kDa##BC017057|SRP72|6731|signal recognition particle 72kDa##BC056901|SRP72|6731|signal recognition particle 72kDa##BC105583|SRP72|6731|signal recognition particle 72kDa##BC040134|SRP72|6731|signal recognition particle 72kDa##BX537991|SRP72|6731|signal recognition particle 72kDa##AF038851|SRP72|6731|signal recognition particle 72kDa##BC046143|SRP72|6731|signal recognition particle 72kDa##BC065018|SRP72|6731|signal recognition particle 72kDa##AF069765|SRP72|6731|signal recognition particle 72kDa##BC032609|SRP72|6731|signal recognition particle 72kDa##AK225430|SRP72|6731|signal recognition particle 72kDa##AK307397|SRP72|6731|signal recognition particle 72kDa##AF077019|SRP72|6731|signal recognition particle 72kDa##AY439003|ARL9|132946|ADP-ribosylation factor-like 9##NM_206919|ARL9|132946|ADP-ribosylation factor-like 9	1.985105	0.0	
chr5	58255771	58255948	reg1014451.p1	4.391	+	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-376940	+	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	-468565	+	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	-499923	-	BC036319 NM_001197223	39899	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	79519	-	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	316071	-	AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.989064	0.0	denovo_WM_7:23:0.989
chr8	8151406	8151484	reg1008519.p2	4.391	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-65303	+	AK292586 NM_001193630	-367587	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-399241	+	TSC_hg19_v1_chr8_-_8175862 AF075060	24443	-	AK122582 NM_001080826	87777	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	408253	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	1.975014	0.0	denovo_WM_7:-77:0.369	denovo_WM_7:-78:0.282
chr1	169881339	169881433	reg1012193.p2	4.390	+	TSC_hg19_v1_chr1_-_169863059 NM_020423 NM_181093	-18324	-	AL117233 TSC_hg19_v1_chr1_-_169863038 BC014662 AK292507	-18373	-	AL354614 NM_018186	-116837	+	AK122897 NM_001204517	156669	-	CU688542 DQ890952 DQ894114 AK026471 TSC_hg19_v1_chr1_-_170043807 AK315586 U59919 AK297368 AK303052 BC028679 NM_001204514 NM_001204516 NM_014970	162357	-	BC157860 BC171858 NM_001136107	233801	+	NM_020423|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##NM_181093|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL117233|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##BC014662|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AK292507|SCYL3|57147|SCY1-like 3 (S. cerevisiae)##AL354614|C1orf112|55732|chromosome 1 open reading frame 112##NM_018186|C1orf112|55732|chromosome 1 open reading frame 112##AK122897|KIFAP3|22920|kinesin-associated protein 3##NM_001204517|KIFAP3|22920|kinesin-associated protein 3##DQ890952|KIFAP3|22920|kinesin-associated protein 3##DQ894114|KIFAP3|22920|kinesin-associated protein 3##AK026471|KIFAP3|22920|kinesin-associated protein 3##AK315586|KIFAP3|22920|kinesin-associated protein 3##U59919|KIFAP3|22920|kinesin-associated protein 3##AK297368|KIFAP3|22920|kinesin-associated protein 3##AK303052|KIFAP3|22920|kinesin-associated protein 3##BC028679|KIFAP3|22920|kinesin-associated protein 3##NM_001204514|KIFAP3|22920|kinesin-associated protein 3##NM_001204516|KIFAP3|22920|kinesin-associated protein 3##NM_014970|KIFAP3|22920|kinesin-associated protein 3##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B	0.997983	0.0	denovo_WM_7:2:0.929
chr12	49923461	49923579	reg1013262.p1	4.390	+	TSC_hg19_v1_chr12_+_49761253 BC017767 AL833614 BC048299 AK292334 AK023202 BX648916 BC032441	-162126	+	TSC_hg19_v1_chr12_+_49760679 AK095582 NM_023071	-162831	+	BC033236 NM_024902	-182480	+	TSC_hg19_v1_chr12_+_49932842 AB033108 NM_012284 BC144254 BC150602 AB022696 AB384589	9500	+	AY336730 NM_001012300	36701	-	TSC_hg19_v1_chr12_-_49961916 AK123187 BC011794 NM_006337 BX538079 AK308581	38398	-	BC017767|SPATS2|65244|spermatogenesis associated, serine-rich 2##AL833614|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC048299|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK292334|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK023202|SPATS2|65244|spermatogenesis associated, serine-rich 2##BX648916|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC032441|SPATS2|65244|spermatogenesis associated, serine-rich 2##AK095582|SPATS2|65244|spermatogenesis associated, serine-rich 2##NM_023071|SPATS2|65244|spermatogenesis associated, serine-rich 2##BC033236|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##NM_024902|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##AB033108|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##NM_012284|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##BC144254|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##BC150602|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##AB022696|KCNH3|23416|potassium voltage-gated channel, subfamily H (eag-related), member 3##AY336730|MCRS1|10445|microspherule protein 1##NM_001012300|MCRS1|10445|microspherule protein 1##BC011794|MCRS1|10445|microspherule protein 1##NM_006337|MCRS1|10445|microspherule protein 1##BX538079|MCRS1|10445|microspherule protein 1	0.998879	0.0	denovo_WM_7:103:0.232	denovo_WM_7:104:0.671
chr1	9762408	9762565	reg1015431.p2	4.390	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-50682	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-113530	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-162850	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	121409	-	TSC_hg19_v1_chr1_-_9884023 AK304813	121535	-	TSC_hg19_v1_chr1_-_9884024 BC033902	121558	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	1.992047	1.586794	CTCF.p2:6:0.965	CTCF.p2:-26:0.622	denovo_WM_7:79:0.212	denovo_WM_7:101:0.217
chr2	148602683	148602773	reg1001113.p2	4.390	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	-83	+	TSC_hg19_v1_chr2_+_148602300 AK314124	-393	+	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	-611	+	TSC_hg19_v1_chr2_-_148778310 AK225092 BC005388 AF022108 AF047598 AF132596 BC014847 AK295721 AK291989 AK294878 AK298862 NM_001190882 NM_001190879 AK299749 NM_002552 NM_001190881 NM_181741	175634	-	TSC_hg19_v1_chr2_+_148778636 NM_018328 EF542797	175881	+	NM_181742	176444	-	BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK225092|ORC4|5000|origin recognition complex, subunit 4##BC005388|ORC4|5000|origin recognition complex, subunit 4##AF022108|ORC4|5000|origin recognition complex, subunit 4##AF047598|ORC4|5000|origin recognition complex, subunit 4##AF132596|ORC4|5000|origin recognition complex, subunit 4##BC014847|ORC4|5000|origin recognition complex, subunit 4##AK295721|ORC4|5000|origin recognition complex, subunit 4##AK291989|ORC4|5000|origin recognition complex, subunit 4##AK294878|ORC4|5000|origin recognition complex, subunit 4##AK298862|ORC4|5000|origin recognition complex, subunit 4##NM_001190882|ORC4|5000|origin recognition complex, subunit 4##NM_001190879|ORC4|5000|origin recognition complex, subunit 4##AK299749|ORC4|5000|origin recognition complex, subunit 4##NM_002552|ORC4|5000|origin recognition complex, subunit 4##NM_001190881|ORC4|5000|origin recognition complex, subunit 4##NM_181741|ORC4|5000|origin recognition complex, subunit 4##NM_018328|MBD5|55777|methyl-CpG binding domain protein 5##EF542797|MBD5|55777|methyl-CpG binding domain protein 5##NM_181742|ORC4|5000|origin recognition complex, subunit 4	0.0	0.0	
chr1	117132906	117133025	reg1010970.p1	4.389	+	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	-19288	-	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	-19350	-	TSC_hg19_v1_chr1_-_116961216 AK309389	-171727	-	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	77418	-	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	164142	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	319677	+	AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator	0.991685	0.0	denovo_WM_7:36:0.485	denovo_WM_7:39:0.307
chr12	118335436	118335549	reg1010779.p2	4.389	+	AK294435 AF446135 EU753241 U17327 AK307481 NM_000620 NM_001204218	-535984	-	AF446136 TSC_hg19_v1_chr12_-_117799037	-536471	-	NM_001204214	-588278	-	NM_173598	70535	-	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	119076	+	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	163443	-	AK294435|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446135|NOS1|4842|nitric oxide synthase 1 (neuronal)##EU753241|NOS1|4842|nitric oxide synthase 1 (neuronal)##U17327|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK307481|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_000620|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204218|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446136|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204214|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_173598|KSR2|283455|kinase suppressor of ras 2##NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2	0.041948	0.0	
chr20	30921448	30921584	reg1012695.p2	4.389	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	-56030	+	TSC_hg19_v1_chr20_+_30795710 CU674282 AL832023	-125785	+	D80002 TSC_hg19_v1_chr20_+_30795698	-125818	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	24654	+	TSC_hg19_v1_chr20_+_30946787 AK122923	25310	+	AB023195 TSC_hg19_v1_chr20_+_31017235	95695	+	NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##AL832023|POFUT1|23509|protein O-fucosyltransferase 1##D80002|POFUT1|23509|protein O-fucosyltransferase 1##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)##AB023195|ASXL1|171023|additional sex combs like 1 (Drosophila)	2.350888	0.0	denovo_WM_7:-40:0.822	denovo_WM_7:-55:0.235	denovo_WM_7:-72:0.331
chr2	68598909	68598975	reg1008007.p2	4.388	+	TSC_hg19_v1_chr2_+_68592449 DQ893586 DQ894896 CU676266 AB528939 CR542056 CR542079	-6485	+	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	-6570	+	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	-51842	-	BC089423 DQ904332 NM_001024680 TSC_hg19_v1_chr2_-_68694427	95468	-	TSC_hg19_v1_chr2_+_68694716 AK290841 NM_173545 AK308186 BC041144 CU691972	95822	+	AB084080 AF506287 AY089976 BC100960 EF577399 NM_138964	274011	+	DQ893586|PLEK|5341|pleckstrin##DQ894896|PLEK|5341|pleckstrin##CR542056|PLEK|5341|pleckstrin##CR542079|PLEK|5341|pleckstrin##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##BC089423|FBXO48|554251|F-box protein 48##DQ904332|FBXO48|554251|F-box protein 48##NM_001024680|FBXO48|554251|F-box protein 48##AK290841|APLF|200558|aprataxin and PNKP like factor##NM_173545|APLF|200558|aprataxin and PNKP like factor##AK308186|APLF|200558|aprataxin and PNKP like factor##BC041144|APLF|200558|aprataxin and PNKP like factor##AB084080|PROKR1|10887|prokineticin receptor 1##AF506287|PROKR1|10887|prokineticin receptor 1##AY089976|PROKR1|10887|prokineticin receptor 1##BC100960|PROKR1|10887|prokineticin receptor 1##EF577399|PROKR1|10887|prokineticin receptor 1##NM_138964|PROKR1|10887|prokineticin receptor 1	0.025076	0.0	
chr2	7125281	7125433	reg1010748.p1	4.388	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-67770	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-107494	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-118654	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1696846	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1852362	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	2018464	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.996092	0.0	
chr3	150322821	150322926	reg1008069.p1	4.388	+	NM_016275 TSC_hg19_v1_chr3_+_150321107 BC006012 AK300315 BC026350 AK075006 AY358095 AF195141 BC008411 BC009611 AY358096 AF131856 BC071699 BC036738 BC009556 CU679417 CU693228 CU691400	-1718	+	BC039424 AK125413 TSC_hg19_v1_chr3_-_150321004	-1897	-	TSC_hg19_v1_chr3_+_150264579 BX647951 AL833101 BC011885 AF497978 AB590213 DQ896788 EU176412 AF172818	-58287	+	AK093375 AX748085 BC036239 BC029577 NM_152394	98856	-	TSC_hg19_v1_chr3_-_150480902 AK223565	158026	-	TSC_hg19_v1_chr3_-_150480936 BC013082	158057	-	NM_016275|SELT|51714|selenoprotein T##BC006012|SELT|51714|selenoprotein T##AK300315|SELT|51714|selenoprotein T##BC026350|SELT|51714|selenoprotein T##AK075006|SELT|51714|selenoprotein T##AY358095|SELT|51714|selenoprotein T##AF195141|SELT|51714|selenoprotein T##BC008411|SELT|51714|selenoprotein T##BC009611|SELT|51714|selenoprotein T##AY358096|SELT|51714|selenoprotein T##AF131856|SELT|51714|selenoprotein T##BC071699|SELT|51714|selenoprotein T##BC036738|SELT|51714|selenoprotein T##BC009556|SELT|51714|selenoprotein T##AK125413|SERP1|27230|stress-associated endoplasmic reticulum protein 1##BX647951|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AL833101|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##BC011885|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF497978|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##DQ896788|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##EU176412|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AF172818|EIF2A|83939|eukaryotic translation initiation factor 2A, 65kDa##AK093375|FAM194A|131831|family with sequence similarity 194, member A##BC036239|FAM194A|131831|family with sequence similarity 194, member A##BC029577|FAM194A|131831|family with sequence similarity 194, member A##NM_152394|FAM194A|131831|family with sequence similarity 194, member A##AK223565|SIAH2|6478|seven in absentia homolog 2 (Drosophila)##BC013082|SIAH2|6478|seven in absentia homolog 2 (Drosophila)	0.994941	0.0	denovo_WM_7:-38:0.332	denovo_WM_7:-39:0.332	denovo_WM_7:-40:0.332
chr5	124287752	124287846	reg1013671.p1	4.388	+	BC131507 AB033107 BC151226 NM_020747	-207011	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1439917	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1528655	-	NM_001146319 AK316288 AK300154	1408015	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1471044	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1471388	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.999297	0.0	
chr1	107994005	107994185	reg1000373.p2	4.387	+	AB023193 TSC_hg19_v1_chr1_+_107683657	-310491	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-311353	+	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	-394730	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	237029	-	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	513505	-	AJ619961 NM_213651 AK292567	741301	-	AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.0	0.0	
chr1	45966497	45966629	reg1011774.p1	4.387	+	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	-624	+	TSC_hg19_v1_chr1_-_45956836 BX648441 AK027573 AK294172 BC022194 AB057597 AJ132545 AK299269 NM_007170 AK302494	-9730	-	TSC_hg19_v1_chr1_+_45805883 AK298162 AK093320 BC009364 CU679325 CR457320	-160663	+	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	21015	-	NM_001202431	21998	-	NM_001202413 NM_001202414 NM_006066 NM_153326 TSC_hg19_v1_chr1_+_46016497 AK311175 AK307068	49925	+	AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BX648441|TESK2|10420|testis-specific kinase 2##AK027573|TESK2|10420|testis-specific kinase 2##AK294172|TESK2|10420|testis-specific kinase 2##BC022194|TESK2|10420|testis-specific kinase 2##AB057597|TESK2|10420|testis-specific kinase 2##AJ132545|TESK2|10420|testis-specific kinase 2##AK299269|TESK2|10420|testis-specific kinase 2##NM_007170|TESK2|10420|testis-specific kinase 2##AK302494|TESK2|10420|testis-specific kinase 2##AK298162|TOE1|114034|target of EGR1, member 1 (nuclear)##AK093320|TOE1|114034|target of EGR1, member 1 (nuclear)##BC009364|TOE1|114034|target of EGR1, member 1 (nuclear)##CR457320|TOE1|114034|target of EGR1, member 1 (nuclear)##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1##NM_001202431|PRDX1|5052|peroxiredoxin 1##NM_001202413|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_001202414|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_006066|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_153326|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307068|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)	0.999559	0.0	
chr19	7452357	7452449	reg1010116.p1	4.387	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-158443	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-352852	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-382688	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	7604	+	TSC_hg19_v1_chr19_+_7460061 AB011093	7674	+	AK127045 NM_001130955	52170	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.181567	0.0	denovo_WM_7:-38:0.458	denovo_WM_7:-56:0.552
chr3	38796759	38796893	reg1012075.p1	4.387	+	M77235 NM_000335 NM_001099404 NM_001099405 NM_198056 BC051374 NM_001160160 NM_001160161	-105686	-	TSC_hg19_v1_chr3_+_38537982 AK315814	-258846	+	BC015820 TSC_hg19_v1_chr3_+_38537851 BC065368 AK023235 AK289602	-258976	+	AF117907 NM_006514	38674	-	AF109737 AF150882 NM_014139	195225	-	TSC_hg19_v1_chr3_+_39093498 AB040882 AK025513 AK297349 AK298810 AK302307 BC026353 NM_020839 BC037168 AB385469 AF468833 AL832926	296675	+	M77235|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_000335|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001099404|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001099405|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_198056|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##BC051374|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001160160|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##NM_001160161|SCN5A|6331|sodium channel, voltage-gated, type V, alpha subunit##AK315814|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC015820|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC065368|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK023235|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK289602|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AF117907|SCN10A|6336|sodium channel, voltage-gated, type X, alpha subunit##NM_006514|SCN10A|6336|sodium channel, voltage-gated, type X, alpha subunit##AF109737|SCN11A|11280|sodium channel, voltage-gated, type XI, alpha subunit##AF150882|SCN11A|11280|sodium channel, voltage-gated, type XI, alpha subunit##NM_014139|SCN11A|11280|sodium channel, voltage-gated, type XI, alpha subunit##AB040882|WDR48|57599|WD repeat domain 48##AK025513|WDR48|57599|WD repeat domain 48##AK297349|WDR48|57599|WD repeat domain 48##AK298810|WDR48|57599|WD repeat domain 48##AK302307|WDR48|57599|WD repeat domain 48##BC026353|WDR48|57599|WD repeat domain 48##NM_020839|WDR48|57599|WD repeat domain 48##BC037168|WDR48|57599|WD repeat domain 48##AF468833|WDR48|57599|WD repeat domain 48##AL832926|WDR48|57599|WD repeat domain 48	0.828229	0.0	denovo_WM_7:-68:0.720
chr19	19304090	19304260	reg1014126.p2	4.386	+	TSC_hg19_v1_chr19_+_19303746 AF105427 AF077196 AF105428	-423	+	BC157837 BC171829 BC073957 NM_001145783 NM_001145784 NM_005919	-865	-	NM_003721 NM_134440 BC114558 BC114563 AF094760	-1124	+	AY101377 AK301426 BC057837 NM_176880	9975	-	TSC_hg19_v1_chr19_+_19322766 NM_004386 AB210004	18625	+	TSC_hg19_v1_chr19_-_19372371 AB107883 AB527158	68196	-	AF105427|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##AF077196|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##AF105428|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##BC157837|MEF2BNB|729991|MEF2B neighbor##BC171829|MEF2BNB|729991|MEF2B neighbor##BC073957|MEF2BNB|729991|MEF2B neighbor##NM_001145783|MEF2BNB|729991|MEF2B neighbor##NM_001145784|MEF2BNB|729991|MEF2B neighbor##NM_005919|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##NM_003721|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##NM_134440|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##BC114558|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##BC114563|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##AF094760|RFXANK|8625|regulatory factor X-associated ankyrin-containing protein##AY101377|NR2C2AP|126382|nuclear receptor 2C2-associated protein##AK301426|NR2C2AP|126382|nuclear receptor 2C2-associated protein##BC057837|NR2C2AP|126382|nuclear receptor 2C2-associated protein##NM_176880|NR2C2AP|126382|nuclear receptor 2C2-associated protein##NM_004386|NCAN|1463|neurocan##AB210004|NCAN|1463|neurocan##AB107883|HAPLN4|404037|hyaluronan and proteoglycan link protein 4	1.259671	0.0	
chr20	53597179	53597314	reg1009621.p2	4.386	+	TSC_hg19_v1_chr20_+_53092131 BC008992 NM_018431 AF132732 AK313222	-505032	+	TSC_hg19_v1_chr20_+_52824630 AK312059 BC010953 U41816	-772609	+	TSC_hg19_v1_chr20_+_52824396 NM_002623	-772799	+	NM_080617	982765	-	BC069105 NM_019888 AB529241 AY227893 BC069591 BC069599 BC096702 BC096737 BC098169 BC098351 CU686926	1226541	+	NM_080821 TSC_hg19_v1_chr20_+_54934029 AK314768 AJ311123 BC017725 AK075565	1336778	+	BC008992|DOK5|55816|docking protein 5##NM_018431|DOK5|55816|docking protein 5##AF132732|DOK5|55816|docking protein 5##AK313222|DOK5|55816|docking protein 5##AK312059|PFDN4|5203|prefoldin subunit 4##BC010953|PFDN4|5203|prefoldin subunit 4##U41816|PFDN4|5203|prefoldin subunit 4##NM_002623|PFDN4|5203|prefoldin subunit 4##NM_080617|CBLN4|140689|cerebellin 4 precursor##BC069105|MC3R|4159|melanocortin 3 receptor##NM_019888|MC3R|4159|melanocortin 3 receptor##AY227893|MC3R|4159|melanocortin 3 receptor##BC069591|MC3R|4159|melanocortin 3 receptor##BC069599|MC3R|4159|melanocortin 3 receptor##BC096702|MC3R|4159|melanocortin 3 receptor##BC096737|MC3R|4159|melanocortin 3 receptor##BC098169|MC3R|4159|melanocortin 3 receptor##BC098351|MC3R|4159|melanocortin 3 receptor##NM_080821|FAM210B|116151|family with sequence similarity 210, member B##AK314768|FAM210B|116151|family with sequence similarity 210, member B##AJ311123|FAM210B|116151|family with sequence similarity 210, member B##BC017725|FAM210B|116151|family with sequence similarity 210, member B##AK075565|FAM210B|116151|family with sequence similarity 210, member B	0.181396	0.0	
chr3	5063916	5064085	reg1013095.p2	4.386	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	-42646	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	-42819	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	-42884	+	BC063125 NM_018184 TSC_hg19_v1_chr3_+_5163976 AK001564 AK298951 AK303872 AK295465 BC013131	99955	+	TSC_hg19_v1_chr3_+_5164041 AB528951 AB118751 CR457264	100091	+	TSC_hg19_v1_chr3_+_5229344 AK298511	165327	+	AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC063125|ARL8B|55207|ADP-ribosylation factor-like 8B##NM_018184|ARL8B|55207|ADP-ribosylation factor-like 8B##AK001564|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298951|ARL8B|55207|ADP-ribosylation factor-like 8B##AK303872|ARL8B|55207|ADP-ribosylation factor-like 8B##AK295465|ARL8B|55207|ADP-ribosylation factor-like 8B##BC013131|ARL8B|55207|ADP-ribosylation factor-like 8B##AB118751|ARL8B|55207|ADP-ribosylation factor-like 8B##CR457264|ARL8B|55207|ADP-ribosylation factor-like 8B##AK298511|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1	0.045748	0.0	
chr16	9226620	9226732	reg1004756.p1	4.385	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-41073	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-41136	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-169381	-	BC143273 U09002 NM_001134408	1049157	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	1049512	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	1050001	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.0	0.0	
chr3	152120860	152120965	reg1006985.p1	4.385	+	AY358260 NM_001123228	-62134	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-103719	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-133567	-	NM_002563 Z49205	431823	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	759114	+	TSC_hg19_v1_chr3_+_152880058 BC012362	759136	+	AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family	0.999399	0.0	denovo_WM_7:21:0.779	denovo_WM_7:22:0.203
chr6	138843824	138844004	reg1010527.p1	4.385	+	TSC_hg19_v1_chr6_-_138820580 AK092744 AX747703	-23298	-	AK307584 NM_001144060 TSC_hg19_v1_chr6_-_138820579	-23336	-	BC010290 TSC_hg19_v1_chr6_+_138725477 BC008205 BC093037 AF411610	-118369	+	TSC_hg19_v1_chr6_-_138893682 NM_020464	49794	-	TSC_hg19_v1_chr6_+_139013613 AK128874	169699	+	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	250876	+	AK307584|NHSL1|57224|NHS-like 1##NM_001144060|NHSL1|57224|NHS-like 1##BC010290|HEBP2|23593|heme binding protein 2##BC008205|HEBP2|23593|heme binding protein 2##BC093037|HEBP2|23593|heme binding protein 2##AF411610|HEBP2|23593|heme binding protein 2##NM_020464|NHSL1|57224|NHS-like 1##AK128874|FLJ46906|441172|uncharacterized LOC441172##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A	0.141998	0.0	
chr11	64132108	64132260	reg1014158.p2	4.384	+	TSC_hg19_v1_chr11_+_64126642 AK223561 NM_001006944 NM_003942 AJ010119 AK292163 AK313567 BC047896 AK298507 BC028079 CU690526 AF074715	-5453	+	TSC_hg19_v1_chr11_+_64120348 AK126728	-11825	+	TSC_hg19_v1_chr11_+_64107692 BC151218 BC151222 NM_032251 AK090436 BC140822 BC140824 BC141866	-24482	+	AK290791 BC034384 NM_018484 AK129930	190941	+	AB050269 NM_144585 NM_153378	226097	+	BC043422 TSC_hg19_v1_chr11_-_64377473	245218	-	AK223561|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_001006944|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_003942|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AJ010119|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK292163|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK313567|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC047896|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK298507|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC028079|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AF074715|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK126728|CCDC88B|283234|coiled-coil domain containing 88B##BC151218|CCDC88B|283234|coiled-coil domain containing 88B##BC151222|CCDC88B|283234|coiled-coil domain containing 88B##NM_032251|CCDC88B|283234|coiled-coil domain containing 88B##AK090436|CCDC88B|283234|coiled-coil domain containing 88B##BC140822|CCDC88B|283234|coiled-coil domain containing 88B##BC140824|CCDC88B|283234|coiled-coil domain containing 88B##BC141866|CCDC88B|283234|coiled-coil domain containing 88B##AK290791|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##BC034384|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##NM_018484|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##AK129930|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##AB050269|SLC22A12|116085|solute carrier family 22 (organic anion/urate transporter), member 12##NM_144585|SLC22A12|116085|solute carrier family 22 (organic anion/urate transporter), member 12##NM_153378|SLC22A12|116085|solute carrier family 22 (organic anion/urate transporter), member 12	0.992509	0.0	
chr1	26186371	26186545	reg1014441.p2	4.384	+	AK024326 NM_024037 AK223419 BC000209 GQ844687	-584	-	BC017175 NM_001099626 AY007100	-39103	+	TSC_hg19_v1_chr1_-_26147289 AK054768	-39151	-	BC034015 NM_178422	11285	-	NM_203401	46185	-	BC082228 AB209282 X53305 BX647885 Z11566 AK303692 AK054594 AK311801 D28428 TSC_hg19_v1_chr1_-_26232911 J04991 BC014353 NM_001145454 NM_005563	46483	-	AK024326|C1orf135|79000|chromosome 1 open reading frame 135##NM_024037|C1orf135|79000|chromosome 1 open reading frame 135##AK223419|C1orf135|79000|chromosome 1 open reading frame 135##BC000209|C1orf135|79000|chromosome 1 open reading frame 135##GQ844687|C1orf135|79000|chromosome 1 open reading frame 135##BC017175|FAM54B|56181|family with sequence similarity 54, member B##NM_001099626|FAM54B|56181|family with sequence similarity 54, member B##AY007100|FAM54B|56181|family with sequence similarity 54, member B##AK054768|LOC646471|646471|uncharacterized LOC646471##BC034015|PAQR7|164091|progestin and adipoQ receptor family member VII##NM_178422|PAQR7|164091|progestin and adipoQ receptor family member VII##NM_203401|STMN1|3925|stathmin 1##BC082228|STMN1|3925|stathmin 1##AB209282|STMN1|3925|stathmin 1##X53305|STMN1|3925|stathmin 1##BX647885|STMN1|3925|stathmin 1##Z11566|STMN1|3925|stathmin 1##AK303692|STMN1|3925|stathmin 1##AK054594|STMN1|3925|stathmin 1##AK311801|STMN1|3925|stathmin 1##D28428|STMN1|3925|stathmin 1##J04991|STMN1|3925|stathmin 1##BC014353|STMN1|3925|stathmin 1##NM_001145454|STMN1|3925|stathmin 1##NM_005563|STMN1|3925|stathmin 1	0.617151	0.0	
chr13	47148875	47149033	reg1015585.p1	4.384	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-21447	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-21534	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-21631	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	222361	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	322113	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1426497	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	1.013631	0.0	
chr2	103293708	103293865	reg1013581.p1	4.384	+	BC136377 BC136378 BC035787 NM_003048 AF073299	-57603	+	CR627411 NM_001011552	-204025	+	AK300026 AF077346 NM_003853	-258586	+	AK290589 AK075376 BC006242 TSC_hg19_v1_chr2_-_103353338 AK307178 NM_032718 AK296768	59547	-	TSC_hg19_v1_chr2_+_103353393 AL832688 AK054856 BC107694 BC073844	59596	+	CR936735 NM_144632 CR936731 CR936732 AK129862 BC130306 BC130308 HQ258113	84796	+	BC136377|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##BC136378|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##BC035787|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##NM_003048|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##AF073299|SLC9A2|6549|solute carrier family 9 (sodium/hydrogen exchanger), member 2##CR627411|SLC9A4|389015|solute carrier family 9 (sodium/hydrogen exchanger), member 4##NM_001011552|SLC9A4|389015|solute carrier family 9 (sodium/hydrogen exchanger), member 4##AK300026|IL18RAP|8807|interleukin 18 receptor accessory protein##AF077346|IL18RAP|8807|interleukin 18 receptor accessory protein##NM_003853|IL18RAP|8807|interleukin 18 receptor accessory protein##AK290589|MFSD9|84804|major facilitator superfamily domain containing 9##AK075376|MFSD9|84804|major facilitator superfamily domain containing 9##BC006242|MFSD9|84804|major facilitator superfamily domain containing 9##AK307178|MFSD9|84804|major facilitator superfamily domain containing 9##NM_032718|MFSD9|84804|major facilitator superfamily domain containing 9##AK296768|MFSD9|84804|major facilitator superfamily domain containing 9##AL832688|TMEM182|130827|transmembrane protein 182##AK054856|TMEM182|130827|transmembrane protein 182##BC107694|TMEM182|130827|transmembrane protein 182##BC073844|TMEM182|130827|transmembrane protein 182##CR936735|TMEM182|130827|transmembrane protein 182##NM_144632|TMEM182|130827|transmembrane protein 182##CR936731|TMEM182|130827|transmembrane protein 182##CR936732|TMEM182|130827|transmembrane protein 182##AK129862|TMEM182|130827|transmembrane protein 182##BC130306|TMEM182|130827|transmembrane protein 182##BC130308|TMEM182|130827|transmembrane protein 182##HQ258113|TMEM182|130827|transmembrane protein 182	0.0	0.0	
chr3	175134849	175134977	reg1002029.p2	4.384	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-557823	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-976193	+	BC032555 NM_014932	-2018670	+	TSC_hg19_v1_chr3_-_176914267 BX648935	1779337	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	1780038	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	1780146	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.981153	0.0	denovo_WM_7:1:0.421	denovo_WM_7:2:0.421
chr4	128619982	128620079	reg1001911.p1	4.384	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	-65891	+	NM_024582	-2382464	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	-2986216	-	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	31579	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	83403	+	TSC_hg19_v1_chr4_+_128703476 AK027822 AK307464	83446	+	NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like##AK027822|HSPA4L|22824|heat shock 70kDa protein 4-like##AK307464|HSPA4L|22824|heat shock 70kDa protein 4-like	0.0	0.0	
chr5	58633122	58633249	reg1013716.p1	4.384	+	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	-61255	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	-297807	-	BC036319 NM_001197223	-337427	-	AB528028 AF536977 NM_001197219 TSC_hg19_v1_chr5_-_58652809	19558	-	U50159 NM_006203 L20970	249114	-	AJ250854 BT007398 TSC_hg19_v1_chr5_-_59064363	431163	-	AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF536977|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197219|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50159|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_006203|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##L20970|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AJ250854|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##BT007398|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.998146	0.0	denovo_WM_7:-15:0.951
chr16	89543532	89543663	reg1011325.p2	4.383	+	AK293862 NM_001242885	-156057	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-192641	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-193523	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	13334	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	31217	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	83468	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.992312	0.0	denovo_WM_7:12:0.837
chr3	175202537	175202672	reg1015157.p1	4.383	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-625514	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-1043884	+	BC032555 NM_014932	-2086361	+	TSC_hg19_v1_chr3_-_176914267 BX648935	1711646	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	1712347	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	1712455	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.16283	0.0	
chr6_cox_hap2	3569053	3569233	reg1011710.p2	4.383	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.954099	0.0	denovo_WM_7:11:0.825	denovo_WM_7:26:0.701	denovo_WM_7:27:0.259
chr11	31964587	31964736	reg1014349.p1	4.382	+	AB593092 AK314470 NM_001127612 TSC_hg19_v1_chr11_-_31839510	-125183	-	AB209177 TSC_hg19_v1_chr11_-_31832871 BX640762 NM_000280 NM_001604	-131792	-	BC011953 TSC_hg19_v1_chr11_-_31832790	-131874	-	TSC_hg19_v1_chr11_+_32112495 AK129791 NM_002901	147816	+	BC010120 TSC_hg19_v1_chr11_+_32112676 D42073 CU679627 DQ892928 DQ896177	148038	+	AK093168 BC032861 NM_001198551 NM_001198552	487699	-	AB593092|PAX6|5080|paired box 6##AK314470|PAX6|5080|paired box 6##NM_001127612|PAX6|5080|paired box 6##AB209177|PAX6|5080|paired box 6##BX640762|PAX6|5080|paired box 6##NM_000280|PAX6|5080|paired box 6##NM_001604|PAX6|5080|paired box 6##BC011953|PAX6|5080|paired box 6##AK129791|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##NM_002901|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##BC010120|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##D42073|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ892928|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ896177|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##AK093168|WT1|7490|Wilms tumor 1##BC032861|WT1|7490|Wilms tumor 1##NM_001198551|WT1|7490|Wilms tumor 1##NM_001198552|WT1|7490|Wilms tumor 1	0.0	0.0	
chr16	81464833	81464984	reg1008746.p1	4.382	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-116258	+	TSC_hg19_v1_chr16_+_81348566 AK095378 NM_022041 AF291673	-116339	+	AK296011 AF294900 AK001592 BC022269 NM_017429 BC126210 BC126212 HQ258298	-192505	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	13925	+	AY172689 NM_030629	64045	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	347989	+	BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##AK095378|GAN|8139|gigaxonin##NM_022041|GAN|8139|gigaxonin##AF291673|GAN|8139|gigaxonin##AK296011|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AF294900|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AK001592|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC022269|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##NM_017429|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC126210|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC126212|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##HQ258298|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	0.963768	0.0	denovo_WM_7:-40:0.781
chr19	18285633	18285753	reg1012068.p1	4.382	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-1052	+	TSC_hg19_v1_chr19_+_18284622 BC021136 BC031020 AF097362	-1072	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	-1102	+	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	18342	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	29111	-	NM_001098819 U88712	49609	-	DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##BC021136|IFI30|10437|interferon, gamma-inducible protein 30##BC031020|IFI30|10437|interferon, gamma-inducible protein 30##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	0.99834	0.0	denovo_WM_7:-5:0.457	denovo_WM_7:-6:0.457
chr3	62192513	62192619	reg1009707.p1	4.382	+	AB055764 TSC_hg19_v1_chr3_-_61728812	-463755	-	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-644590	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-645280	+	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	112140	+	BC017772 NM_020685	112829	+	AK290464 NM_018008	166623	-	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14##AK290464|FEZF2|55079|FEZ family zinc finger 2##NM_018008|FEZF2|55079|FEZ family zinc finger 2	1.919936	0.0	denovo_WM_7:28:0.661	denovo_WM_7:43:0.486	denovo_WM_7:45:0.251
chr9	16542390	16542508	reg1011654.p2	4.382	+	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	-989428	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-1031489	-	AF098483 AF098482 NM_021144	-1032202	-	TSC_hg19_v1_chr9_-_16727889 AY438376	185448	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	328218	-	TSC_hg19_v1_chr9_-_16870747 CR933649 AK299073 NM_017637	328317	-	AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AY438376|BNC2|54796|basonuclin 2##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2##CR933649|BNC2|54796|basonuclin 2##AK299073|BNC2|54796|basonuclin 2##NM_017637|BNC2|54796|basonuclin 2	0.01208	0.0	
chr9	98137156	98137222	reg1020119.p2	4.382	+	AK312548 AK222871 TSC_hg19_v1_chr9_-_98079974 BC015748 X66893 AK304887 NM_000136 NM_001243744	-57258	-	X66894 NM_001243743	-57669	-	AK298959 TSC_hg19_v1_chr9_+_97766501 AK300486	-370714	+	TSC_hg19_v1_chr9_-_98268874 AB209495 AB233423 AB233424 CU692174	131684	-	AB189440 NM_001083607	132291	-	TSC_hg19_v1_chr9_-_98269686 NM_001083606 U43148	132511	-	AK312548|FANCC|2176|Fanconi anemia, complementation group C##AK222871|FANCC|2176|Fanconi anemia, complementation group C##BC015748|FANCC|2176|Fanconi anemia, complementation group C##X66893|FANCC|2176|Fanconi anemia, complementation group C##AK304887|FANCC|2176|Fanconi anemia, complementation group C##NM_000136|FANCC|2176|Fanconi anemia, complementation group C##NM_001243744|FANCC|2176|Fanconi anemia, complementation group C##X66894|FANCC|2176|Fanconi anemia, complementation group C##NM_001243743|FANCC|2176|Fanconi anemia, complementation group C##AK298959|C9orf3|84909|chromosome 9 open reading frame 3##AK300486|C9orf3|84909|chromosome 9 open reading frame 3##AB209495|PTCH1|5727|patched 1##AB233423|PTCH1|5727|patched 1##AB233424|PTCH1|5727|patched 1##AB189440|PTCH1|5727|patched 1##NM_001083607|PTCH1|5727|patched 1##NM_001083606|PTCH1|5727|patched 1##U43148|PTCH1|5727|patched 1	0.0	0.0	
chrX	16874118	16874252	reg1010722.p1	4.382	+	TSC_hg19_v1_chrX_+_16804588 NM_001168683 NM_018360 AK002071 BC101572 BC101576 AY739713	-69577	+	TSC_hg19_v1_chrX_+_16737761 AK314675 AK303783 AF168955 AF338728 AK295322 AK027401 AK222856 BC001468 BC014657 AB528559 CU677083 EU831445	-136396	+	TSC_hg19_v1_chrX_+_16737703 NM_032796 CR749849	-136494	+	AK091911 AX747249 NM_001198719 TSC_hg19_v1_chrX_-_16888008	13808	-	AB463219 CR541701 AK291567 TSC_hg19_v1_chrX_-_16888381 BC114500 BC114501 U35143	14120	-	TSC_hg19_v1_chrX_-_16888456 X72841	14266	-	NM_001168683|TXLNG|55787|taxilin gamma##NM_018360|TXLNG|55787|taxilin gamma##AK002071|TXLNG|55787|taxilin gamma##BC101572|TXLNG|55787|taxilin gamma##BC101576|TXLNG|55787|taxilin gamma##AY739713|TXLNG|55787|taxilin gamma##AK314675|SYAP1|94056|synapse associated protein 1##AK303783|SYAP1|94056|synapse associated protein 1##AF168955|SYAP1|94056|synapse associated protein 1##AF338728|SYAP1|94056|synapse associated protein 1##AK295322|SYAP1|94056|synapse associated protein 1##AK027401|SYAP1|94056|synapse associated protein 1##AK222856|SYAP1|94056|synapse associated protein 1##BC001468|SYAP1|94056|synapse associated protein 1##BC014657|SYAP1|94056|synapse associated protein 1##EU831445|SYAP1|94056|synapse associated protein 1##NM_032796|SYAP1|94056|synapse associated protein 1##CR749849|SYAP1|94056|synapse associated protein 1##AK091911|RBBP7|5931|retinoblastoma binding protein 7##NM_001198719|RBBP7|5931|retinoblastoma binding protein 7##CR541701|RBBP7|5931|retinoblastoma binding protein 7##AK291567|RBBP7|5931|retinoblastoma binding protein 7##BC114500|RBBP7|5931|retinoblastoma binding protein 7##BC114501|RBBP7|5931|retinoblastoma binding protein 7##U35143|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7	1.244988	0.0	denovo_WM_7:-45:0.250	denovo_WM_7:-60:0.241
chr11	85411111	85411260	reg1009526.p1	4.381	+	BC044814 AK095478 NM_152723	-13918	-	TSC_hg19_v1_chr11_-_85376174 BC060807 NM_001039618	-34993	-	TSC_hg19_v1_chr11_-_85376147 AF039942	-35078	-	NM_032379	14605	-	BC068495 AK298604 AK074737 NM_206929 AK092121	18978	-	NM_001162952 NM_206930	19197	-	BC044814|CCDC89|220388|coiled-coil domain containing 89##AK095478|CCDC89|220388|coiled-coil domain containing 89##NM_152723|CCDC89|220388|coiled-coil domain containing 89##BC060807|CREBZF|58487|CREB/ATF bZIP transcription factor##NM_001039618|CREBZF|58487|CREB/ATF bZIP transcription factor##AF039942|CREBZF|58487|CREB/ATF bZIP transcription factor##NM_032379|SYTL2|54843|synaptotagmin-like 2##BC068495|SYTL2|54843|synaptotagmin-like 2##AK298604|SYTL2|54843|synaptotagmin-like 2##AK074737|SYTL2|54843|synaptotagmin-like 2##NM_206929|SYTL2|54843|synaptotagmin-like 2##AK092121|SYTL2|54843|synaptotagmin-like 2##NM_001162952|SYTL2|54843|synaptotagmin-like 2##NM_206930|SYTL2|54843|synaptotagmin-like 2	0.69295	0.035468	denovo_WM_7:-32:0.249	denovo_WM_7:-36:0.259
chr15	52850387	52850567	reg1004742.p1	4.381	+	TSC_hg19_v1_chr15_-_52821078 AB290180 AK303660 AK307600 NM_000259 NM_001142495 U90942 Y07759	-29221	-	AF272390 BC144611 BC064841 TSC_hg19_v1_chr15_-_52587968 AK301079 AK304136 NM_018728	-262543	-	AF161352 TSC_hg19_v1_chr15_-_52529707	-320771	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	10582	-	TSC_hg19_v1_chr15_-_52861228 AF084555 BC003418 NM_006628	10755	-	TSC_hg19_v1_chr15_-_52861344 BC100015 AL833077	10900	-	AB290180|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK303660|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK307600|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_000259|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_001142495|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##U90942|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##Y07759|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AF272390|MYO5C|55930|myosin VC##BC144611|MYO5C|55930|myosin VC##BC064841|MYO5C|55930|myosin VC##AK301079|MYO5C|55930|myosin VC##AK304136|MYO5C|55930|myosin VC##NM_018728|MYO5C|55930|myosin VC##AF161352|MYO5C|55930|myosin VC##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AF084555|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC003418|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##NM_006628|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC100015|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AL833077|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa	0.0	0.0	
chr2	187263985	187264121	reg1009709.p1	4.381	+	NM_173651	-660699	+	BC136602 TSC_hg19_v1_chr2_+_185463544	-1800561	+	BC142612 TSC_hg19_v1_chr2_+_185463319	-1800748	+	TSC_hg19_v1_chr2_+_187350986 AF220184 NM_018471 AK298615 AK001901 AK297658 AF289586	86877	+	TSC_hg19_v1_chr2_+_187351010 BC012336 AF161421 AF109366	86957	+	TSC_hg19_v1_chr2_+_187351051 BC021102 EU176353 AB587394 CU676824	87017	+	NM_173651|FSIP2|401024|fibrous sheath interacting protein 2##BC136602|ZNF804A|91752|zinc finger protein 804A##BC142612|ZNF804A|91752|zinc finger protein 804A##AF220184|ZC3H15|55854|zinc finger CCCH-type containing 15##NM_018471|ZC3H15|55854|zinc finger CCCH-type containing 15##AK298615|ZC3H15|55854|zinc finger CCCH-type containing 15##AK001901|ZC3H15|55854|zinc finger CCCH-type containing 15##AK297658|ZC3H15|55854|zinc finger CCCH-type containing 15##AF289586|ZC3H15|55854|zinc finger CCCH-type containing 15##BC012336|ZC3H15|55854|zinc finger CCCH-type containing 15##AF161421|ZC3H15|55854|zinc finger CCCH-type containing 15##AF109366|ZC3H15|55854|zinc finger CCCH-type containing 15##BC021102|ZC3H15|55854|zinc finger CCCH-type containing 15##EU176353|ZC3H15|55854|zinc finger CCCH-type containing 15	1.972831	0.0	denovo_WM_7:3:0.684
chr6	27516626	27516763	reg1008964.p2	4.381	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-75993	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-160139	+	AF352327 AF336874 BC107050 NM_032030	-224136	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	259029	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	259247	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	261088	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	1.880784	0.0	denovo_WM_7:-76:0.708	denovo_WM_7:-91:0.770
chr6_dbb_hap3	2468466	2468617	reg1003428.p1	4.381	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr9	130754202	130754358	reg1005182.p2	4.381	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-11471	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-41349	-	BC015233 NM_003863	-53518	-	AK122729 NM_197956	75318	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	76203	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	76339	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.0	0.0	
chr1	108721684	108721865	reg1009740.p2	4.380	+	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	-214174	-	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	-490650	-	AB023193 TSC_hg19_v1_chr1_+_107683657	-1038170	+	AJ619961 NM_213651 AK292567	13622	-	AF123303 EU832524 EU832606 AJ619987 TSC_hg19_v1_chr1_-_108742797 AK316506	20996	-	TSC_hg19_v1_chr1_-_108742870 BC014519 BC068561	21067	-	AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AB023193|NTNG1|22854|netrin G1##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AF123303|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832524|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##EU832606|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AJ619987|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK316506|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##BC014519|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##BC068561|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.995481	0.0	denovo_WM_7:-21:0.840
chr2	231416951	231417078	reg1012576.p1	4.380	+	AK091898 NM_001206704	-135544	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-136058	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-136095	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	160532	+	TSC_hg19_v1_chr2_+_231577633 BC020570	160630	+	AK292382 NM_001130849 NM_001130850 AK315692	161264	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	1.315856	0.0	denovo_WM_7:0:0.233	denovo_WM_7:14:0.231
chr2	70363278	70363458	reg1013944.p2	4.380	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-48370	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-48451	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-48541	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	54753	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	112351	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	121882	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.0	0.0	
chr3	183248543	183248635	reg1011565.p2	4.380	+	TSC_hg19_v1_chr3_+_183165436 AK057000	-83159	+	NM_015078 BC064632 AK124500 AK310962	-102650	-	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	-276983	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	24863	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	104811	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	167033	+	AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2	0.99496	0.0	
chr4	40460273	40460445	reg1013432.p1	4.380	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-122914	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-261718	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-401827	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	56225	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	57599	-	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	171506	-	BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47	0.0	0.0	
chr6	21596469	21596599	reg1001916.p1	4.380	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-2162	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1061811	+	CR749285 NM_001243076	-1192501	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	70125	+	BC015850 NM_000948	701195	-	X54394 X54393 GQ305133 M58594 NM_001163558	706513	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.733317	0.0	denovo_WM_7:-27:0.502
chr7	126337253	126337342	reg1005894.p2	4.380	+	NM_001042594 NM_015450	-1767261	-	BC130600 BC130604 NM_001024603	-1906495	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1931501	-	NM_000845	546271	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	555068	-	TSC_hg19_v1_chr7_-_126893165 AK290197	555855	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.999649	0.0	denovo_WM_7:-68:0.298	denovo_WM_7:-69:0.298	denovo_WM_7:-70:0.298
chr9	21144658	21144778	reg1014202.p1	4.380	+	NM_002177	-2575	-	AB451491 AB451323 AB451452 BC069314 BC096150 BC096151 BC096152 BC096153 V00547 AB587428 V00546 M25460 M28622 NM_002176	-66845	-	BC114215 TSC_hg19_v1_chr9_-_21031636 BX648779 NM_001010915	-113087	-	CU686757 AB590744 BC101638 BC101640 BC069329 BC069372 BC069408 V00540 BC096699 M12350 M28586 NM_002175 X00145	21915	-	AB590745 HQ258102 HQ258746 BC074965 BC074966 BC113640 BC113642 NM_021068 M27318	42881	-	BC074991 BC074992 BC113994 BC114000 M34913 NM_021057	57484	-	NM_002177|IFNW1|3467|interferon, omega 1##AB451323|IFNB1|3456|interferon, beta 1, fibroblast##AB451452|IFNB1|3456|interferon, beta 1, fibroblast##BC069314|IFNB1|3456|interferon, beta 1, fibroblast##BC096150|IFNB1|3456|interferon, beta 1, fibroblast##BC096151|IFNB1|3456|interferon, beta 1, fibroblast##BC096152|IFNB1|3456|interferon, beta 1, fibroblast##BC096153|IFNB1|3456|interferon, beta 1, fibroblast##V00547|IFNB1|3456|interferon, beta 1, fibroblast##V00546|IFNB1|3456|interferon, beta 1, fibroblast##M25460|IFNB1|3456|interferon, beta 1, fibroblast##M28622|IFNB1|3456|interferon, beta 1, fibroblast##NM_002176|IFNB1|3456|interferon, beta 1, fibroblast##BC114215|PTPLAD2|401494|protein tyrosine phosphatase-like A domain containing 2##BX648779|PTPLAD2|401494|protein tyrosine phosphatase-like A domain containing 2##NM_001010915|PTPLAD2|401494|protein tyrosine phosphatase-like A domain containing 2##BC101638|IFNA21|3452|interferon, alpha 21##BC101640|IFNA21|3452|interferon, alpha 21##BC069329|IFNA21|3452|interferon, alpha 21##BC069372|IFNA21|3452|interferon, alpha 21##BC069408|IFNA21|3452|interferon, alpha 21##V00540|IFNA21|3452|interferon, alpha 21##BC096699|IFNA21|3452|interferon, alpha 21##M12350|IFNA21|3452|interferon, alpha 21##M28586|IFNA21|3452|interferon, alpha 21##NM_002175|IFNA21|3452|interferon, alpha 21##X00145|IFNA21|3452|interferon, alpha 21##HQ258102|IFNA4|3441|interferon, alpha 4##HQ258746|IFNA4|3441|interferon, alpha 4##BC074965|IFNA4|3441|interferon, alpha 4##BC074966|IFNA4|3441|interferon, alpha 4##BC113640|IFNA4|3441|interferon, alpha 4##BC113642|IFNA4|3441|interferon, alpha 4##NM_021068|IFNA4|3441|interferon, alpha 4##M27318|IFNA4|3441|interferon, alpha 4##BC074991|IFNA7|3444|interferon, alpha 7##BC074992|IFNA7|3444|interferon, alpha 7##BC113994|IFNA7|3444|interferon, alpha 7##BC114000|IFNA7|3444|interferon, alpha 7##M34913|IFNA7|3444|interferon, alpha 7##NM_021057|IFNA7|3444|interferon, alpha 7	0.634782	0.0	denovo_WM_7:-15:0.474
chr12	89919262	89919355	reg1013540.p1	4.379	+	TSC_hg19_v1_chr12_-_89919208 AK123106 NM_001199777	-46	-	TSC_hg19_v1_chr12_-_89918537 AK312870 BC036390 NM_003774	-752	-	TSC_hg19_v1_chr12_-_89746275 BC037236 AK091753 AB189400 NM_001946 NM_022652	-172999	-	CU693124 TSC_hg19_v1_chr12_-_89919778 BX647258 AK074772 AK295596 BC026080 EF011619	452	-	AK297677 NM_001199781 NM_001199782 NM_172240	730	-	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	130543	-	AK123106|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##NM_001199777|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK312870|GALNT4|8693|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)##BC036390|GALNT4|8693|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)##NM_003774|GALNT4|8693|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)##BC037236|DUSP6|1848|dual specificity phosphatase 6##AK091753|DUSP6|1848|dual specificity phosphatase 6##AB189400|DUSP6|1848|dual specificity phosphatase 6##NM_001946|DUSP6|1848|dual specificity phosphatase 6##NM_022652|DUSP6|1848|dual specificity phosphatase 6##BX647258|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##AK074772|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK295596|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BC026080|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##EF011619|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK297677|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199781|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199782|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_172240|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1	0.999229	0.0	denovo_WM_7:26:0.964
chr14	23281030	23281204	reg1007344.p1	4.379	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-45272	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-213928	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-222983	-	TSC_hg19_v1_chr14_-_23284568 AK025377	3462	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	3515	-	AB020532 BX161519 NM_001126105	3941	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.998661	0.0	
chr15	66103789	66103939	reg1008101.p1	4.379	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-19271	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-19391	-	AF062922 NM_004727	-189595	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	57983	+	TSC_hg19_v1_chr15_-_66321664 AK054827	217829	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	442213	-	AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11	1.28747	0.0	denovo_WM_7:55:0.238
chr15	99833813	99833984	reg1011650.p1	4.379	+	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	-42256	+	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	-42482	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	-44192	-	NM_001130926 NM_001130927 NM_001171894 NM_005587 TSC_hg19_v1_chr15_+_100106173 AB208985	272255	+	TSC_hg19_v1_chr15_+_100106196 AL831995 AK294207	272296	+	BC013437 TSC_hg19_v1_chr15_+_100106231 AK291835 X68504	272337	+	BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##NM_001130926|MEF2A|4205|myocyte enhancer factor 2A##NM_001130927|MEF2A|4205|myocyte enhancer factor 2A##NM_001171894|MEF2A|4205|myocyte enhancer factor 2A##NM_005587|MEF2A|4205|myocyte enhancer factor 2A##AB208985|MEF2A|4205|myocyte enhancer factor 2A##AL831995|MEF2A|4205|myocyte enhancer factor 2A##AK294207|MEF2A|4205|myocyte enhancer factor 2A##BC013437|MEF2A|4205|myocyte enhancer factor 2A##AK291835|MEF2A|4205|myocyte enhancer factor 2A##X68504|MEF2A|4205|myocyte enhancer factor 2A	1.996493	0.0	
chr17	35730592	35730711	reg1013470.p1	4.379	+	TSC_hg19_v1_chr17_-_35716040 AB371587 AK309084 AY315621 AY315622 NM_198836	-14599	-	AY315619 AY315620 NM_198837 NM_198838	-73960	-	AK057229 NM_012138 TSC_hg19_v1_chr17_+_35306253 AF083208 BC000591 AJ249940 AB385572 CU674286 DQ892097 DQ895290	-424352	+	AK096966 BC034672 NM_173625 CU689930	2329	+	AK308905 TSC_hg19_v1_chr17_-_35766928 AY315623 AY315625 AY315626 NM_198834 NM_198839	36224	-	TSC_hg19_v1_chr17_+_35766978 NM_001166105 AK096371 AK225918	36311	+	AB371587|ACACA|31|acetyl-CoA carboxylase alpha##AK309084|ACACA|31|acetyl-CoA carboxylase alpha##AY315621|ACACA|31|acetyl-CoA carboxylase alpha##AY315622|ACACA|31|acetyl-CoA carboxylase alpha##NM_198836|ACACA|31|acetyl-CoA carboxylase alpha##AY315619|ACACA|31|acetyl-CoA carboxylase alpha##AY315620|ACACA|31|acetyl-CoA carboxylase alpha##NM_198837|ACACA|31|acetyl-CoA carboxylase alpha##NM_198838|ACACA|31|acetyl-CoA carboxylase alpha##AK057229|AATF|26574|apoptosis antagonizing transcription factor##NM_012138|AATF|26574|apoptosis antagonizing transcription factor##AF083208|AATF|26574|apoptosis antagonizing transcription factor##BC000591|AATF|26574|apoptosis antagonizing transcription factor##AJ249940|AATF|26574|apoptosis antagonizing transcription factor##DQ892097|AATF|26574|apoptosis antagonizing transcription factor##DQ895290|AATF|26574|apoptosis antagonizing transcription factor##AK096966|C17orf78|284099|chromosome 17 open reading frame 78##BC034672|C17orf78|284099|chromosome 17 open reading frame 78##NM_173625|C17orf78|284099|chromosome 17 open reading frame 78##AK308905|ACACA|31|acetyl-CoA carboxylase alpha##AY315623|ACACA|31|acetyl-CoA carboxylase alpha##AY315625|ACACA|31|acetyl-CoA carboxylase alpha##AY315626|ACACA|31|acetyl-CoA carboxylase alpha##NM_198834|ACACA|31|acetyl-CoA carboxylase alpha##NM_198839|ACACA|31|acetyl-CoA carboxylase alpha##NM_001166105|TADA2A|6871|transcriptional adaptor 2A##AK096371|TADA2A|6871|transcriptional adaptor 2A##AK225918|TADA2A|6871|transcriptional adaptor 2A	0.0	0.165785	
chr18	77705962	77706101	reg1017680.p1	4.379	+	TSC_hg19_v1_chr18_+_77659453 BC169279	-46570	+	AJ011021 NM_012283	-82364	+	NM_001202504	-264602	+	TSC_hg19_v1_chr18_-_77711643 BC030140	5595	-	AK301881 NM_001146343 NM_001146345 NM_025078 TSC_hg19_v1_chr18_-_77711653	5621	-	TSC_hg19_v1_chr18_+_77724644 NM_001136180 BC040056 BC017654 BC157848	18592	+	AJ011021|KCNG2|26251|potassium voltage-gated channel, subfamily G, member 2##NM_012283|KCNG2|26251|potassium voltage-gated channel, subfamily G, member 2##NM_001202504|CTDP1|9150|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1##BC030140|PQLC1|80148|PQ loop repeat containing 1##AK301881|PQLC1|80148|PQ loop repeat containing 1##NM_001146343|PQLC1|80148|PQ loop repeat containing 1##NM_001146345|PQLC1|80148|PQ loop repeat containing 1##NM_025078|PQLC1|80148|PQ loop repeat containing 1##NM_001136180|HSBP1L1|440498|heat shock factor binding protein 1-like 1##BC040056|HSBP1L1|440498|heat shock factor binding protein 1-like 1##BC017654|HSBP1L1|440498|heat shock factor binding protein 1-like 1##BC157848|HSBP1L1|440498|heat shock factor binding protein 1-like 1	0.0	0.0	
chr3	178154586	178154728	reg1011835.p2	4.379	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-1239598	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-1239706	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-1240407	-	BC017825 NM_181361	99566	+	AF209747 NM_005832	121895	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	634908	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	0.0	0.967271	CTCF.p2:17:0.967
chrX	104166949	104167075	reg1011554.p1	4.379	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	-356020	+	AK290196 TSC_hg19_v1_chrX_+_103810879	-356133	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-667426	-	BC108734 AF285597 BC042547 NM_031274	298341	-	TSC_hg19_v1_chrX_+_105066535 BX538345 NM_198465 BC108702	899526	+	TSC_hg19_v1_chrX_+_105066559 AK131549	899554	+	AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A##BX538345|NRK|203447|Nik related kinase##NM_198465|NRK|203447|Nik related kinase##BC108702|NRK|203447|Nik related kinase##AK131549|NRK|203447|Nik related kinase	0.0	1.552646	CTCF.p2:31:0.995	CTCF.p2:-57:0.558
chr12	94172377	94172515	reg1012111.p1	4.378	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-101263	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-206845	-	TSC_hg19_v1_chr12_+_93964804 AK297662 AK309452	-207626	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	370058	+	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	681085	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	681196	-	NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##AK297662|SOCS2|8835|suppressor of cytokine signaling 2##AK309452|SOCS2|8835|suppressor of cytokine signaling 2##AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41	1.010225	0.0	denovo_WM_7:61:0.985
chr14	82881301	82881469	reg1012216.p1	4.378	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-881158	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-881237	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-1016559	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	3115088	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	3115156	+	TSC_hg19_v1_chr14_+_85999692 AK297248	3118200	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.998642	0.0	denovo_WM_7:-26:0.462	denovo_WM_7:-27:0.518
chr19	10208619	10208739	reg1011819.p1	4.378	+	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-11617	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-11682	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	-11893	+	AY358276 BC142632 AB054064 NM_031917 AF230330	4721	-	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	8310	+	NM_002566 BC073827	13525	+	AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66##AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11	0.998219	0.0	
chr3	16631566	16631715	reg1004949.p2	4.378	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-76416	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-76622	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-324932	+	BX648638 AK303026 NM_001190811	14630	-	U65918 U66726 U66078 BC027595 NM_001351	15326	-	AB029015 NM_001144382	294811	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	0.703695	0.0	denovo_WM_7:-55:0.491
chr12	12639672	12639852	reg1010024.p1	4.377	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-129597	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-136590	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-219920	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	75638	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	125033	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	125121	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.0	0.0	
chr15	41186623	41186742	reg1007614.p2	4.377	+	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	-20235	-	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-49981	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-50332	+	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	18	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	35016	+	NM_001142776 NM_024111 TSC_hg19_v1_chr15_+_41245671 BC019625 BC001683 BC001847 AY702027	59022	+	AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)##NM_001142776|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##NM_024111|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC019625|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001683|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001847|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##AY702027|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)	0.0	0.0	
chr4	114713434	114713550	reg1009786.p1	4.377	+	TSC_hg19_v1_chr4_-_114682923 NM_001221 NM_172114 NM_172115 NM_172127 NM_172128 NM_172129	-30522	-	TSC_hg19_v1_chr4_-_114682619 AK055642 AB209288	-30836	-	BC022558 TSC_hg19_v1_chr4_-_114682567	-30926	-	AK307532 TSC_hg19_v1_chr4_-_114900840 AY358647 NM_024590	187347	-	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	806091	+	NM_003360 U30930	830030	+	NM_001221|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172114|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172115|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172127|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172128|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172129|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK055642|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AB209288|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##BC022558|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK307532|ARSJ|79642|arylsulfatase family, member J##AY358647|ARSJ|79642|arylsulfatase family, member J##NM_024590|ARSJ|79642|arylsulfatase family, member J##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8	0.996585	0.0	denovo_WM_7:14:0.985
chr8	22304304	22304467	reg1009668.p1	4.377	+	TSC_hg19_v1_chr8_+_22298813 AY007249 AB385002 CU678778	-5541	+	TSC_hg19_v1_chr8_+_22298590 BC004864 S46622 AK299415	-5748	+	AK055013 TSC_hg19_v1_chr8_+_22298511 NM_001243974 NM_001243975 NM_005605	-5939	+	TSC_hg19_v1_chr8_+_22409237 BC091514 NM_005775	104853	+	TSC_hg19_v1_chr8_+_22409439 AK303950 AF037261 BC067260	105068	+	TSC_hg19_v1_chr8_+_22423258 NM_001018003 AF064807 BC010146	118852	+	AY007249|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##BC004864|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##S46622|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##AK299415|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##AK055013|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_001243974|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_001243975|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##NM_005605|PPP3CC|5533|protein phosphatase 3, catalytic subunit, gamma isozyme##BC091514|SORBS3|10174|sorbin and SH3 domain containing 3##NM_005775|SORBS3|10174|sorbin and SH3 domain containing 3##AK303950|SORBS3|10174|sorbin and SH3 domain containing 3##AF037261|SORBS3|10174|sorbin and SH3 domain containing 3##BC067260|SORBS3|10174|sorbin and SH3 domain containing 3##NM_001018003|SORBS3|10174|sorbin and SH3 domain containing 3##AF064807|SORBS3|10174|sorbin and SH3 domain containing 3##BC010146|SORBS3|10174|sorbin and SH3 domain containing 3	1.241025	0.0	denovo_WM_7:-46:0.256	denovo_WM_7:-61:0.246
chr10	25210519	25210699	reg1012199.p2	4.376	+	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	-198003	-	AK307604 TSC_hg19_v1_chr10_-_25012174	-198436	-	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-455140	+	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	30923	-	CU693144 DQ892076 DQ895269 BC064597 AK095021 NM_145010 AY454125 AK292495 BC026165	94365	-	NM_024838 TSC_hg19_v1_chr10_+_25305540 AK125249 BC035132 BX647989	94941	+	AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##DQ892076|ENKUR|219670|enkurin, TRPC channel interacting protein##DQ895269|ENKUR|219670|enkurin, TRPC channel interacting protein##AK095021|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_145010|ENKUR|219670|enkurin, TRPC channel interacting protein##AY454125|ENKUR|219670|enkurin, TRPC channel interacting protein##AK292495|ENKUR|219670|enkurin, TRPC channel interacting protein##BC026165|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_024838|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##AK125249|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BC035132|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BX647989|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)	0.999026	0.0	denovo_WM_7:42:0.307	denovo_WM_7:43:0.307	denovo_WM_7:44:0.307
chr16	1344745	1344925	reg1013589.p1	4.376	+	NM_012217 BC069143	-38559	+	NM_003294 BC074974 BC074975 BC029356	-54144	+	BC065923 AK308208 BC029356 NM_024164 BC074974	-64657	-	NM_194260 NM_194261	14318	+	TSC_hg19_v1_chr16_+_1359631 NM_003345 NM_194259	14793	+	AK291118 TSC_hg19_v1_chr16_+_1359639	14807	+	NM_012217|TPSD1|23430|tryptase delta 1##BC069143|TPSD1|23430|tryptase delta 1##NM_003294|TPSAB1|7177|tryptase alpha/beta 1##BC074974|TPSAB1|7177|tryptase alpha/beta 1##BC074975|TPSAB1|7177|tryptase alpha/beta 1##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC065923|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##AK308208|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##NM_024164|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC074974|TPSAB1|7177|tryptase alpha/beta 1##NM_194260|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194261|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_003345|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194259|UBE2I|7329|ubiquitin-conjugating enzyme E2I##AK291118|UBE2I|7329|ubiquitin-conjugating enzyme E2I	0.997733	0.0	
chr16	15981942	15982035	reg1010664.p2	4.376	+	BC101677 BC104906 BC143364 AB020673 AY520816 AY520817 TSC_hg19_v1_chr16_-_15950886 AK308389 BC031040 EU489063 NM_001040113 NM_001040114 NM_002474 NM_022844	-31119	-	TSC_hg19_v1_chr16_-_15835382 D10667	-146541	-	BX641087 TSC_hg19_v1_chr16_-_15833973	-148033	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	465	-	AL832498 TSC_hg19_v1_chr16_-_15982471	497	-	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	61376	+	BC101677|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC104906|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC143364|MYH11|4629|myosin, heavy chain 11, smooth muscle##AB020673|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520816|MYH11|4629|myosin, heavy chain 11, smooth muscle##AY520817|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK308389|MYH11|4629|myosin, heavy chain 11, smooth muscle##BC031040|MYH11|4629|myosin, heavy chain 11, smooth muscle##EU489063|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040113|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_001040114|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_002474|MYH11|4629|myosin, heavy chain 11, smooth muscle##NM_022844|MYH11|4629|myosin, heavy chain 11, smooth muscle##D10667|MYH11|4629|myosin, heavy chain 11, smooth muscle##BX641087|MYH11|4629|myosin, heavy chain 11, smooth muscle##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##AL832498|FOPNL|123811|FGFR1OP N-terminal like##L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	0.999732	0.0	denovo_WM_7:-44:0.298	denovo_WM_7:-45:0.298	denovo_WM_7:-46:0.298
chr21	17103119	17103297	reg1005937.p1	4.376	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-667	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-883	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-665991	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	1781955	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	1782163	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	1881932	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	1.696923	0.0	denovo_WM_7:88:0.573	denovo_WM_7:103:0.213	denovo_WM_7:104:0.263	denovo_WM_7:105:0.270
chr2	67611381	67611485	reg1009676.p1	4.376	+	TSC_hg19_v1_chr2_+_66666452 AK297109	-944983	+	BC036511 AK314949 TSC_hg19_v1_chr2_+_66662903 U85707 AB527915	-948593	+	AL832770 BC043503 NM_002398	-948910	+	TSC_hg19_v1_chr2_+_67624467 NM_019002 AJ242682 BC033075 BC040001	13049	+	BC016284 TSC_hg19_v1_chr2_-_68290140 X95592 BC009584 BC009589 BC005235 AK290451	678701	-	NM_001190263 NM_001190265 NM_006333 NM_173177 TSC_hg19_v1_chr2_-_68290160	678727	-	AK297109|MEIS1|4211|Meis homeobox 1##BC036511|MEIS1|4211|Meis homeobox 1##AK314949|MEIS1|4211|Meis homeobox 1##U85707|MEIS1|4211|Meis homeobox 1##AL832770|MEIS1|4211|Meis homeobox 1##BC043503|MEIS1|4211|Meis homeobox 1##NM_002398|MEIS1|4211|Meis homeobox 1##NM_019002|ETAA1|54465|Ewing tumor-associated antigen 1##AJ242682|ETAA1|54465|Ewing tumor-associated antigen 1##BC033075|ETAA1|54465|Ewing tumor-associated antigen 1##BC040001|ETAA1|54465|Ewing tumor-associated antigen 1##BC016284|C1D|10438|C1D nuclear receptor corepressor##X95592|C1D|10438|C1D nuclear receptor corepressor##BC009584|C1D|10438|C1D nuclear receptor corepressor##BC009589|C1D|10438|C1D nuclear receptor corepressor##BC005235|C1D|10438|C1D nuclear receptor corepressor##AK290451|C1D|10438|C1D nuclear receptor corepressor##NM_001190263|C1D|10438|C1D nuclear receptor corepressor##NM_001190265|C1D|10438|C1D nuclear receptor corepressor##NM_006333|C1D|10438|C1D nuclear receptor corepressor##NM_173177|C1D|10438|C1D nuclear receptor corepressor	0.034486	0.0	
chr7	141233245	141233356	reg1009839.p2	4.376	+	NM_001195278	-459269	+	NM_053035 TSC_hg19_v1_chr7_-_140714792	-518514	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	-518550	-	NM_018238 TSC_hg19_v1_chr7_+_141251215 AK304502 AK001704 AK299131 AK222769 AJ278150 BC009775	17857	+	TSC_hg19_v1_chr7_-_141401967 AB032973 NM_001080392 AB384573	168634	-	AK131218 NM_001105558	174852	+	NM_001195278|LOC100507421|100507421|transmembrane protein 178-like##NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33##NM_018238|AGK|55750|acylglycerol kinase##AK304502|AGK|55750|acylglycerol kinase##AK001704|AGK|55750|acylglycerol kinase##AK299131|AGK|55750|acylglycerol kinase##AK222769|AGK|55750|acylglycerol kinase##AJ278150|AGK|55750|acylglycerol kinase##BC009775|AGK|55750|acylglycerol kinase##AB032973|KIAA1147|57189|KIAA1147##NM_001080392|KIAA1147|57189|KIAA1147##AK131218|WEE2|494551|WEE1 homolog 2 (S. pombe)##NM_001105558|WEE2|494551|WEE1 homolog 2 (S. pombe)	0.0	0.971565	CTCF.p2:9:0.972
chr12	25517812	25517904	reg1001488.p3	4.375	+	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-113917	-	TSC_hg19_v1_chr12_-_25403822 BC013572	-114043	-	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-169652	+	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	188338	-	AK296816 NM_001145727	283629	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	594143	+	AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	0.0	0.0	
chr12	72329473	72329593	reg1014832.p1	4.375	+	NM_001146213 NM_001146214 NM_022771 TSC_hg19_v1_chr12_+_72233538 AK022147 AK297626 AK307922 BC028352 AK225747 AL833639 AK225221 AK292306 AB449901	-95998	+	AB385582 AM393692 TSC_hg19_v1_chr12_+_72148987	-180585	+	BC021901 BC092475 TSC_hg19_v1_chr12_+_72148653 AF091035 NM_014999	-180878	+	AY098914 NM_173353 BC114442 BC114499 AK094614	3157	+	TSC_hg19_v1_chr12_-_72666143 BC093901 BC093903	336645	-	AK095156 TSC_hg19_v1_chr12_-_72666355	336810	-	NM_001146213|TBC1D15|64786|TBC1 domain family, member 15##NM_001146214|TBC1D15|64786|TBC1 domain family, member 15##NM_022771|TBC1D15|64786|TBC1 domain family, member 15##AK022147|TBC1D15|64786|TBC1 domain family, member 15##AK297626|TBC1D15|64786|TBC1 domain family, member 15##AK307922|TBC1D15|64786|TBC1 domain family, member 15##BC028352|TBC1D15|64786|TBC1 domain family, member 15##AK225747|TBC1D15|64786|TBC1 domain family, member 15##AL833639|TBC1D15|64786|TBC1 domain family, member 15##AK225221|TBC1D15|64786|TBC1 domain family, member 15##AK292306|TBC1D15|64786|TBC1 domain family, member 15##AB449901|TBC1D15|64786|TBC1 domain family, member 15##AM393692|RAB21|23011|RAB21, member RAS oncogene family##BC021901|RAB21|23011|RAB21, member RAS oncogene family##BC092475|RAB21|23011|RAB21, member RAS oncogene family##AF091035|RAB21|23011|RAB21, member RAS oncogene family##NM_014999|RAB21|23011|RAB21, member RAS oncogene family##AY098914|TPH2|121278|tryptophan hydroxylase 2##NM_173353|TPH2|121278|tryptophan hydroxylase 2##BC114442|TPH2|121278|tryptophan hydroxylase 2##BC114499|TPH2|121278|tryptophan hydroxylase 2##AK094614|TPH2|121278|tryptophan hydroxylase 2##BC093901|LOC283392|283392|uncharacterized LOC283392##BC093903|LOC283392|283392|uncharacterized LOC283392##AK095156|LOC283392|283392|uncharacterized LOC283392	0.0	0.0	
chr16	81807799	81807924	reg1014273.p1	4.375	+	AY172689 NM_030629	-278908	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	-329028	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-459211	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	5036	+	TSC_hg19_v1_chr16_+_81812901 AB208914	5041	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	5069	+	AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	2.324306	0.0	denovo_WM_7:-59:0.227	denovo_WM_7:-74:0.202	denovo_WM_7:81:0.222	denovo_WM_7:82:0.234	denovo_WM_7:83:0.356
chr18	51773090	51773235	reg1013288.p2	4.375	+	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	-22085	-	TSC_hg19_v1_chr18_-_51750997 BC032638	-22197	-	AF072246 TSC_hg19_v1_chr18_-_51750614	-22625	-	NM_007195 TSC_hg19_v1_chr18_+_51795943 AK301578 AF140501 BC032617 BC032662 AL136670 AF245438 AK093688 AB463184 AM392978 DQ890893 DQ896811 CU689468	22778	+	AB528241 AF480305 NM_139171	107780	-	BX640877 NM_173529	112008	+	AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##NM_007195|POLI|11201|polymerase (DNA directed) iota##AK301578|POLI|11201|polymerase (DNA directed) iota##AF140501|POLI|11201|polymerase (DNA directed) iota##BC032617|POLI|11201|polymerase (DNA directed) iota##BC032662|POLI|11201|polymerase (DNA directed) iota##AL136670|POLI|11201|polymerase (DNA directed) iota##AF245438|POLI|11201|polymerase (DNA directed) iota##AK093688|POLI|11201|polymerase (DNA directed) iota##AM392978|POLI|11201|polymerase (DNA directed) iota##DQ890893|POLI|11201|polymerase (DNA directed) iota##DQ896811|POLI|11201|polymerase (DNA directed) iota##AF480305|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##NM_139171|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##BX640877|C18orf54|162681|chromosome 18 open reading frame 54##NM_173529|C18orf54|162681|chromosome 18 open reading frame 54	0.998861	0.0	denovo_WM_7:-64:0.314	denovo_WM_7:-65:0.314	denovo_WM_7:-66:0.314
chr6	7307202	7307364	reg1007765.p2	4.375	+	BX647723 TSC_hg19_v1_chr6_+_7108910	-198380	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	-199060	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	-199248	+	BT007387 CR456961 AB464204 DQ892751 EU176743 TSC_hg19_v1_chr6_-_7313433 Z12830 AK075562 AK222762 AK222809 AK291550 AK312653 CR936719 BC007710 NM_003144	6163	-	AF414185 NM_001170692 NM_001170693 NM_205864 TSC_hg19_v1_chr6_-_7389974	82684	-	TSC_hg19_v1_chr6_+_7390042 AY094356 AK314467 BC006104 NM_031480 AK054568	82815	+	BX647723|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##BT007387|SSR1|6745|signal sequence receptor, alpha##CR456961|SSR1|6745|signal sequence receptor, alpha##DQ892751|SSR1|6745|signal sequence receptor, alpha##EU176743|SSR1|6745|signal sequence receptor, alpha##Z12830|SSR1|6745|signal sequence receptor, alpha##AK075562|SSR1|6745|signal sequence receptor, alpha##AK222762|SSR1|6745|signal sequence receptor, alpha##AK222809|SSR1|6745|signal sequence receptor, alpha##AK291550|SSR1|6745|signal sequence receptor, alpha##AK312653|SSR1|6745|signal sequence receptor, alpha##CR936719|SSR1|6745|signal sequence receptor, alpha##BC007710|SSR1|6745|signal sequence receptor, alpha##NM_003144|SSR1|6745|signal sequence receptor, alpha##AF414185|CAGE1|285782|cancer antigen 1##NM_001170692|CAGE1|285782|cancer antigen 1##NM_001170693|CAGE1|285782|cancer antigen 1##NM_205864|CAGE1|285782|cancer antigen 1##AY094356|RIOK1|83732|RIO kinase 1 (yeast)##AK314467|RIOK1|83732|RIO kinase 1 (yeast)##BC006104|RIOK1|83732|RIO kinase 1 (yeast)##NM_031480|RIOK1|83732|RIO kinase 1 (yeast)##AK054568|RIOK1|83732|RIO kinase 1 (yeast)	0.998992	0.0	denovo_WM_7:-89:0.518	denovo_WM_7:-90:0.462
chr7	48019109	48019244	reg1007991.p2	4.375	+	BT019481 BT019482 CR536552 Y16893 AB463759 BC007013 TSC_hg19_v1_chr7_-_48019149 AK294117 AK290459 AF076844 AF110393	-24	-	AB061683 NM_138295	-31123	-	AK024728 NM_025031 BC113679 BC113681 AK092057 AX747337	-184238	+	TSC_hg19_v1_chr7_-_48019247 NM_004507	53	-	AK302011 BC026189 AF429967 NM_001030019 NM_152782	49503	-	BC045737 BC031107 NM_001100159	55935	+	BT019481|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BT019482|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##CR536552|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##Y16893|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007013|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK294117|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK290459|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF076844|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF110393|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AB061683|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_138295|PKD1L1|168507|polycystic kidney disease 1 like 1##AK024728|C7orf69|80099|chromosome 7 open reading frame 69##NM_025031|C7orf69|80099|chromosome 7 open reading frame 69##BC113679|C7orf69|80099|chromosome 7 open reading frame 69##BC113681|C7orf69|80099|chromosome 7 open reading frame 69##AK092057|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_004507|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK302011|SUN3|256979|Sad1 and UNC84 domain containing 3##BC026189|SUN3|256979|Sad1 and UNC84 domain containing 3##AF429967|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_001030019|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_152782|SUN3|256979|Sad1 and UNC84 domain containing 3##BC045737|C7orf57|136288|chromosome 7 open reading frame 57##BC031107|C7orf57|136288|chromosome 7 open reading frame 57##NM_001100159|C7orf57|136288|chromosome 7 open reading frame 57	0.0	0.0	
chr22	19476781	19476910	reg1010795.p1	4.374	+	AF053074 TSC_hg19_v1_chr22_+_19467483 AK302590 AF062495 CT841513 AB587488 BT006792 CU012976 CU013264 CU679577 DQ890621 DQ892651 DQ893790 DQ895890	-9366	+	AK293123 AK303274 NM_001178010 NM_001178011 NM_003504 TSC_hg19_v1_chr22_+_19467423 AY358971 BC006232 BC010022 AK293338 AF081535 AJ223728	-9407	+	TSC_hg19_v1_chr22_-_19466726 NM_001035247 NM_005659	-10109	-	BT007254 CU012981 CU013269 AB528106 AF000959 AK222466 BC002404 BC019290 BC032363 TSC_hg19_v1_chr22_-_19511925	35010	-	TSC_hg19_v1_chr22_-_19512001 CR456420	35185	-	AK092561 NM_001130861 NM_003277	36014	-	AF053074|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK302590|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AF062495|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##CT841513|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BT006792|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##CU012976|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##CU013264|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ890621|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ892651|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ893790|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##DQ895890|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK293123|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK303274|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_001178010|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_001178011|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_003504|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AY358971|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BC006232|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##BC010022|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AK293338|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AF081535|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##AJ223728|CDC45|8318|cell division cycle 45 homolog (S. cerevisiae)##NM_001035247|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##NM_005659|UFD1L|7353|ubiquitin fusion degradation 1 like (yeast)##BT007254|CLDN5|7122|claudin 5##CU012981|CLDN5|7122|claudin 5##CU013269|CLDN5|7122|claudin 5##AF000959|CLDN5|7122|claudin 5##AK222466|CLDN5|7122|claudin 5##BC002404|CLDN5|7122|claudin 5##BC019290|CLDN5|7122|claudin 5##BC032363|CLDN5|7122|claudin 5##CR456420|CLDN5|7122|claudin 5##AK092561|CLDN5|7122|claudin 5##NM_001130861|CLDN5|7122|claudin 5##NM_003277|CLDN5|7122|claudin 5	0.999703	0.013468	denovo_WM_7:14:0.721
chr2	76047673	76047816	reg1010319.p1	4.374	+	TSC_hg19_v1_chr2_-_75938042 BC064559 BC000853 EF158467 EF158468 AB026911 NM_001201335 NM_003203	-109693	-	TSC_hg19_v1_chr2_-_75937707 AK097564 NM_001201334	-110025	-	TSC_hg19_v1_chr2_+_75873908 NM_014763 AK295578 AK291250 BC030144 CU688824 AB463123 BC021051 D14660 DQ892303 DQ895502	-173806	+	BC098267 BC098301 BC099738 BC110058 AY358324 TSC_hg19_v1_chr2_-_77749457 AK122612 AK126961 NM_001134745 NM_024993	1701674	-	AY359047 NM_001008387 NM_198448 AB161037 AB161038 AK292595 AY428734 BC103852 BC103853 BC103854	3205094	+	AK312057 D16816 AK308515 AK308507 AK311088 NM_006507	3267389	-	BC064559|GCFC2|6936|GC-rich sequence DNA-binding factor 2##BC000853|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158467|GCFC2|6936|GC-rich sequence DNA-binding factor 2##EF158468|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AB026911|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201335|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_003203|GCFC2|6936|GC-rich sequence DNA-binding factor 2##AK097564|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_001201334|GCFC2|6936|GC-rich sequence DNA-binding factor 2##NM_014763|MRPL19|9801|mitochondrial ribosomal protein L19##AK295578|MRPL19|9801|mitochondrial ribosomal protein L19##AK291250|MRPL19|9801|mitochondrial ribosomal protein L19##BC030144|MRPL19|9801|mitochondrial ribosomal protein L19##BC021051|MRPL19|9801|mitochondrial ribosomal protein L19##D14660|MRPL19|9801|mitochondrial ribosomal protein L19##DQ892303|MRPL19|9801|mitochondrial ribosomal protein L19##DQ895502|MRPL19|9801|mitochondrial ribosomal protein L19##BC098267|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC098301|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC099738|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##BC110058|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY358324|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK122612|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AK126961|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_001134745|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##NM_024993|LRRTM4|80059|leucine rich repeat transmembrane neuronal 4##AY359047|REG3G|130120|regenerating islet-derived 3 gamma##NM_001008387|REG3G|130120|regenerating islet-derived 3 gamma##NM_198448|REG3G|130120|regenerating islet-derived 3 gamma##AB161037|REG3G|130120|regenerating islet-derived 3 gamma##AB161038|REG3G|130120|regenerating islet-derived 3 gamma##AK292595|REG3G|130120|regenerating islet-derived 3 gamma##AY428734|REG3G|130120|regenerating islet-derived 3 gamma##BC103852|REG3G|130120|regenerating islet-derived 3 gamma##BC103853|REG3G|130120|regenerating islet-derived 3 gamma##BC103854|REG3G|130120|regenerating islet-derived 3 gamma##AK312057|REG1B|5968|regenerating islet-derived 1 beta##D16816|REG1B|5968|regenerating islet-derived 1 beta##AK308515|REG1B|5968|regenerating islet-derived 1 beta##AK308507|REG1B|5968|regenerating islet-derived 1 beta##NM_006507|REG1B|5968|regenerating islet-derived 1 beta	0.998405	0.0	
chr9	131433313	131433411	reg1007517.p1	4.374	+	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	-14296	-	TSC_hg19_v1_chr9_-_131418938 BC001614	-14399	-	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-44619	+	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	12642	+	TSC_hg19_v1_chr9_+_131446108 D45198 AB464200 AM393022 JF729356	12777	+	NM_001248000	14002	+	BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##BC001614|WDR34|89891|WD repeat domain 34##AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene##D45198|SET|6418|SET nuclear oncogene##AM393022|SET|6418|SET nuclear oncogene##JF729356|SET|6418|SET nuclear oncogene##NM_001248000|SET|6418|SET nuclear oncogene	0.989693	0.0	denovo_WM_7:-4:0.236	denovo_WM_7:-5:0.236	denovo_WM_7:-6:0.236	denovo_WM_7:-7:0.236
chr14	50330644	50330816	reg1010095.p2	4.373	+	TSC_hg19_v1_chr14_-_50329567 X02067	-1134	-	TSC_hg19_v1_chr14_-_50319530 AK295010 AK293236 BC006001 BC056687 NM_004713	-11197	-	TSC_hg19_v1_chr14_-_50319497 AK304695 AK308537	-11234	-	TSC_hg19_v1_chr14_+_50359731 NM_001663	29000	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	29088	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	29103	+	X02067|RN7SL2|378706|RNA, 7SL, cytoplasmic 2##AK295010|NEMF|9147|nuclear export mediator factor##AK293236|NEMF|9147|nuclear export mediator factor##BC006001|NEMF|9147|nuclear export mediator factor##BC056687|NEMF|9147|nuclear export mediator factor##NM_004713|NEMF|9147|nuclear export mediator factor##AK304695|NEMF|9147|nuclear export mediator factor##AK308537|NEMF|9147|nuclear export mediator factor##NM_001663|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6	1.20267	0.0	
chr15	66678961	66679104	reg1008315.p2	4.373	+	AK000523 TSC_hg19_v1_chr15_-_66649024 AK299233 BC000870 NM_017858	-30009	-	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	-93133	+	NM_133375 AK295392 BC022089	-93387	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	130	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	241	+	TSC_hg19_v1_chr15_+_66694219 AK294322	15185	+	AK000523|TIPIN|54962|TIMELESS interacting protein##AK299233|TIPIN|54962|TIMELESS interacting protein##BC000870|TIPIN|54962|TIMELESS interacting protein##NM_017858|TIPIN|54962|TIMELESS interacting protein##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1	0.0	0.0	
chr11	17405597	17405761	reg1013561.p2	4.372	+	TSC_hg19_v1_chr11_+_17373346 CR749521 NM_001202439 BX537685 BC136797 BC136800	-32338	+	TSC_hg19_v1_chr11_+_17332454 BC172867	-73196	+	TSC_hg19_v1_chr11_+_17298285 EU039832 EU039833 NM_005013 X76732 BC111556 AF450266	-107366	+	BC064497 NM_000525	4526	-	BC040617 AK301550 NM_001166290 TSC_hg19_v1_chr11_-_17410958	5231	-	U63421 HM635782 TSC_hg19_v1_chr11_-_17498355 AK297560 AF087138 L78207 AB209084	92664	-	CR749521|B7H6|374383|B7 homolog 6##NM_001202439|B7H6|374383|B7 homolog 6##BX537685|B7H6|374383|B7 homolog 6##BC136797|B7H6|374383|B7 homolog 6##BC136800|B7H6|374383|B7 homolog 6##EU039832|NUCB2|4925|nucleobindin 2##EU039833|NUCB2|4925|nucleobindin 2##NM_005013|NUCB2|4925|nucleobindin 2##X76732|NUCB2|4925|nucleobindin 2##BC111556|NUCB2|4925|nucleobindin 2##AF450266|NUCB2|4925|nucleobindin 2##BC064497|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_000525|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##BC040617|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##AK301550|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_001166290|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##U63421|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##HM635782|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AK297560|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AF087138|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##L78207|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AB209084|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8	0.0	0.99967	CTCF.p2:-35:1.000
chr19	47799544	47799638	reg1011508.p1	4.372	+	TSC_hg19_v1_chr19_+_47778141 BC022076 BC045749 NM_178511 BC064510	-21455	+	TSC_hg19_v1_chr19_+_47759811 BC002787 BC009743	-39773	+	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	-39830	+	BC008982 NM_001736 TSC_hg19_v1_chr19_+_47813117 M62505	13511	+	AB038237 NM_018485	40779	+	NM_014681 TSC_hg19_v1_chr19_+_47852571 AK304710	52978	+	BC022076|PRR24|255783|proline rich 24##BC045749|PRR24|255783|proline rich 24##NM_178511|PRR24|255783|proline rich 24##BC064510|PRR24|255783|proline rich 24##BC002787|CCDC9|26093|coiled-coil domain containing 9##BC009743|CCDC9|26093|coiled-coil domain containing 9##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9##BC008982|C5AR1|728|complement component 5a receptor 1##NM_001736|C5AR1|728|complement component 5a receptor 1##M62505|C5AR1|728|complement component 5a receptor 1##AB038237|GPR77|27202|G protein-coupled receptor 77##NM_018485|GPR77|27202|G protein-coupled receptor 77##NM_014681|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34##AK304710|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34	0.0	0.993392	CTCF.p2:-24:0.993
chr5	114914462	114914591	reg1013124.p1	4.372	+	TSC_hg19_v1_chr5_-_114880540 BC028369 NM_020177	-33963	-	TSC_hg19_v1_chr5_-_114880370 AL365415 AK315803 BC098385	-34169	-	AB587510 AJ580807 NM_001040440	-282178	-	BC109265 BC109266 NM_021649	23591	-	TSC_hg19_v1_chr5_-_114961697 AK074962	47166	-	TSC_hg19_v1_chr5_-_114961708 AY304583 AY304584 BC019349 AK075218 AK304210 AK027512 NM_001164468 NM_001164469 NM_181836	47268	-	BC028369|FEM1C|56929|fem-1 homolog c (C. elegans)##NM_020177|FEM1C|56929|fem-1 homolog c (C. elegans)##AL365415|FEM1C|56929|fem-1 homolog c (C. elegans)##AK315803|FEM1C|56929|fem-1 homolog c (C. elegans)##BC098385|FEM1C|56929|fem-1 homolog c (C. elegans)##AJ580807|CCDC112|153733|coiled-coil domain containing 112##NM_001040440|CCDC112|153733|coiled-coil domain containing 112##BC109265|TICAM2|353376|toll-like receptor adaptor molecule 2##BC109266|TICAM2|353376|toll-like receptor adaptor molecule 2##NM_021649|TICAM2|353376|toll-like receptor adaptor molecule 2##AK074962|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AY304583|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AY304584|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##BC019349|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK075218|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##AK304210|TMED7|51014|transmembrane emp24 protein transport domain containing 7##AK027512|TMED7|51014|transmembrane emp24 protein transport domain containing 7##NM_001164468|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_001164469|TMED7-TICAM2|100302736|TMED7-TICAM2 readthrough##NM_181836|TMED7|51014|transmembrane emp24 protein transport domain containing 7	0.0	0.0	
chr10	103654620	103654737	reg1011144.p1	4.371	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-51071	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-55066	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-76460	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	161234	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	170464	+	AK300588 TSC_hg19_v1_chr10_-_103874641	219941	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.997814	0.0	denovo_WM_7:-39:0.238	denovo_WM_7:-40:0.238	denovo_WM_7:-41:0.238	denovo_WM_7:-42:0.238
chr11	85998166	85998346	reg1007754.p2	4.371	+	TSC_hg19_v1_chr11_+_85956277 BC068995 AK294133 CU686693 AB463023 EU446743 AF078933 AK301265 BC047672	-41970	+	AF099032 U90651 TSC_hg19_v1_chr11_+_85956254	-42039	+	AF070418 TSC_hg19_v1_chr11_+_85956058	-42207	+	NM_016401 TSC_hg19_v1_chr11_+_86013281 AF161487 AF161527 AK001447 AK223198 BC015991 BC021621 AK298763 BC018080 BC001677 BC006476 DQ892731 DQ895977 CU674828 CU676162	15113	+	AK131331 NM_001156474 NM_021827	87521	+	TSC_hg19_v1_chr11_-_86383218 BC022472 NM_001014811 AK092181	384949	-	BC068995|EED|8726|embryonic ectoderm development##AK294133|EED|8726|embryonic ectoderm development##EU446743|EED|8726|embryonic ectoderm development##AF078933|EED|8726|embryonic ectoderm development##AK301265|EED|8726|embryonic ectoderm development##BC047672|EED|8726|embryonic ectoderm development##AF099032|EED|8726|embryonic ectoderm development##U90651|EED|8726|embryonic ectoderm development##AF070418|EED|8726|embryonic ectoderm development##NM_016401|C11orf73|51501|chromosome 11 open reading frame 73##AF161487|C11orf73|51501|chromosome 11 open reading frame 73##AF161527|C11orf73|51501|chromosome 11 open reading frame 73##AK001447|C11orf73|51501|chromosome 11 open reading frame 73##AK223198|C11orf73|51501|chromosome 11 open reading frame 73##BC015991|C11orf73|51501|chromosome 11 open reading frame 73##BC021621|C11orf73|51501|chromosome 11 open reading frame 73##AK298763|C11orf73|51501|chromosome 11 open reading frame 73##BC018080|C11orf73|51501|chromosome 11 open reading frame 73##BC001677|C11orf73|51501|chromosome 11 open reading frame 73##BC006476|C11orf73|51501|chromosome 11 open reading frame 73##DQ892731|C11orf73|51501|chromosome 11 open reading frame 73##DQ895977|C11orf73|51501|chromosome 11 open reading frame 73##AK131331|CCDC81|60494|coiled-coil domain containing 81##NM_001156474|CCDC81|60494|coiled-coil domain containing 81##NM_021827|CCDC81|60494|coiled-coil domain containing 81##BC022472|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##NM_001014811|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial##AK092181|ME3|10873|malic enzyme 3, NADP(+)-dependent, mitochondrial	0.0	0.0	
chr11	9414494	9414674	reg1009099.p1	4.371	+	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-8364	+	TSC_hg19_v1_chr11_+_9406165 NM_006391	-8432	+	TSC_hg19_v1_chr11_-_9336182 BC044597 BC035034 NM_001165030 NM_015012	-78347	-	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	67544	-	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	67959	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	180629	+	AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_006391|IPO7|10527|importin 7##BC044597|TMEM41B|440026|transmembrane protein 41B##BC035034|TMEM41B|440026|transmembrane protein 41B##NM_001165030|TMEM41B|440026|transmembrane protein 41B##NM_015012|TMEM41B|440026|transmembrane protein 41B##BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)	0.999297	0.0	
chr16	30640075	30640244	reg1009833.p1	4.371	+	AK310459 AB065282 BC014000 NM_138447 TSC_hg19_v1_chr16_-_30621684	-18503	-	TSC_hg19_v1_chr16_-_30597103 AK309511 EU446576 AK292465 BC040642 AK298848 AK056692 NM_152458	-43184	-	NM_001024683 NM_145271	-56432	-	TSC_hg19_v1_chr16_+_30662098 CR936781 AK125716	21941	+	TSC_hg19_v1_chr16_+_30662286 BC010232 BC050677 NM_024031 BC011573 BC000119 AK074783	22106	+	NM_001105079	35618	+	AK310459|ZNF689|115509|zinc finger protein 689##AB065282|ZNF689|115509|zinc finger protein 689##BC014000|ZNF689|115509|zinc finger protein 689##NM_138447|ZNF689|115509|zinc finger protein 689##AK309511|ZNF785|146540|zinc finger protein 785##EU446576|ZNF785|146540|zinc finger protein 785##AK292465|ZNF785|146540|zinc finger protein 785##BC040642|ZNF785|146540|zinc finger protein 785##AK298848|ZNF785|146540|zinc finger protein 785##AK056692|ZNF785|146540|zinc finger protein 785##NM_152458|ZNF785|146540|zinc finger protein 785##NM_001024683|ZNF688|146542|zinc finger protein 688##NM_145271|ZNF688|146542|zinc finger protein 688##CR936781|PRR14|78994|proline rich 14##AK125716|PRR14|78994|proline rich 14##BC010232|PRR14|78994|proline rich 14##BC050677|PRR14|78994|proline rich 14##NM_024031|PRR14|78994|proline rich 14##BC011573|PRR14|78994|proline rich 14##BC000119|PRR14|78994|proline rich 14##AK074783|PRR14|78994|proline rich 14##NM_001105079|FBRS|64319|fibrosin	0.0	0.864898	CTCF.p2:101:0.865
chr19	20607101	20607207	reg1012164.p2	4.371	+	TSC_hg19_v1_chr19_+_20277998 BC027608 BC008936 BC117268 NM_052852	-329118	+	TSC_hg19_v1_chr19_+_20188813 NM_007138 AK298173 M61870 BC137211	-418317	+	AK027845 TSC_hg19_v1_chr19_-_20150315 AK096571 NM_033196	-456857	-	AK126842 BC022411 TSC_hg19_v1_chr19_-_20607776 BC036006 BC016785 BC017970	614	-	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	141431	-	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	237208	-	BC027608|ZNF486|90649|zinc finger protein 486##BC008936|ZNF486|90649|zinc finger protein 486##BC117268|ZNF486|90649|zinc finger protein 486##NM_052852|ZNF486|90649|zinc finger protein 486##NM_007138|ZNF90|7643|zinc finger protein 90##AK298173|ZNF90|7643|zinc finger protein 90##M61870|ZNF90|7643|zinc finger protein 90##BC137211|ZNF90|7643|zinc finger protein 90##AK027845|ZNF682|91120|zinc finger protein 682##AK096571|ZNF682|91120|zinc finger protein 682##NM_033196|ZNF682|91120|zinc finger protein 682##BC022411|ZNF826P|664701|zinc finger protein 826, pseudogene##BC036006|ZNF826P|664701|zinc finger protein 826, pseudogene##BC016785|ZNF826P|664701|zinc finger protein 826, pseudogene##BC017970|ZNF826P|664701|zinc finger protein 826, pseudogene##BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626	0.998184	0.0	denovo_WM_7:-13:0.827
chr1	92868649	92868743	reg1014128.p2	4.371	+	BC039014 NM_024813 TSC_hg19_v1_chr1_+_92764615 AK023212 BC031070 AK225054 CU691638	-104121	+	TSC_hg19_v1_chr1_-_92764545 AJ302735 AJ347709 BC001257 AK295971 U73704 NM_053274	-104163	-	NM_001012425 BC130499 BC171742	-185121	+	AB463058 DQ891273 DQ894461 AB209606 BC074866 BC074867 TSC_hg19_v1_chr1_-_92949213	80433	-	AK313876 NM_001127215 TSC_hg19_v1_chr1_-_92949370	80683	-	TSC_hg19_v1_chr1_-_92949508 AK123009	80836	-	BC039014|RPAP2|79871|RNA polymerase II associated protein 2##NM_024813|RPAP2|79871|RNA polymerase II associated protein 2##AK023212|RPAP2|79871|RNA polymerase II associated protein 2##BC031070|RPAP2|79871|RNA polymerase II associated protein 2##AK225054|RPAP2|79871|RNA polymerase II associated protein 2##AJ302735|GLMN|11146|glomulin, FKBP associated protein##AJ347709|GLMN|11146|glomulin, FKBP associated protein##BC001257|GLMN|11146|glomulin, FKBP associated protein##AK295971|GLMN|11146|glomulin, FKBP associated protein##U73704|GLMN|11146|glomulin, FKBP associated protein##NM_053274|GLMN|11146|glomulin, FKBP associated protein##NM_001012425|C1orf146|388649|chromosome 1 open reading frame 146##BC130499|C1orf146|388649|chromosome 1 open reading frame 146##BC171742|C1orf146|388649|chromosome 1 open reading frame 146##DQ891273|GFI1|2672|growth factor independent 1 transcription repressor##DQ894461|GFI1|2672|growth factor independent 1 transcription repressor##AB209606|GFI1|2672|growth factor independent 1 transcription repressor##BC074866|GFI1|2672|growth factor independent 1 transcription repressor##BC074867|GFI1|2672|growth factor independent 1 transcription repressor##AK313876|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127215|GFI1|2672|growth factor independent 1 transcription repressor##AK123009|GFI1|2672|growth factor independent 1 transcription repressor	2.755929	0.0	denovo_WM_7:-16:0.314	denovo_WM_7:-17:0.315	denovo_WM_7:-85:0.468	denovo_WM_7:-88:0.248	denovo_WM_7:-100:0.244	denovo_WM_7:-101:0.369	denovo_WM_7:-103:0.241
chr3	72429060	72429196	reg1012751.p1	4.371	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-594857	-	AK313656 NM_173359	-625205	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-625606	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	468420	-	BC017274 TSC_hg19_v1_chr3_-_72897575	468447	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	468464	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.0	0.0	
chr7	133074581	133074725	reg1012642.p2	4.371	+	TSC_hg19_v1_chr7_+_132937838 NM_001037126 NM_021807 AF380839 AK027688 AL831989 AK298191 BC067263 BC026174 CU693148 AB051486	-136804	+	TSC_hg19_v1_chr7_-_132766851 BC011596 BC014839 AK129533	-307807	-	AB528286 TSC_hg19_v1_chr7_-_132766813 AK294071 AK000427 NM_017812 AK310236	-307889	-	BC104897 BC104899 AK057348 NM_144648	737424	+	AJ971941 TSC_hg19_v1_chr7_-_134001622 AK075368 BC008413 AJ315497 AJ315498 AK307621 AK027603 AK222874	926970	-	TSC_hg19_v1_chr7_-_134001749 AB052892 NM_032826	927134	-	NM_001037126|EXOC4|60412|exocyst complex component 4##NM_021807|EXOC4|60412|exocyst complex component 4##AF380839|EXOC4|60412|exocyst complex component 4##AK027688|EXOC4|60412|exocyst complex component 4##AL831989|EXOC4|60412|exocyst complex component 4##AK298191|EXOC4|60412|exocyst complex component 4##BC067263|EXOC4|60412|exocyst complex component 4##BC026174|EXOC4|60412|exocyst complex component 4##AB051486|EXOC4|60412|exocyst complex component 4##BC011596|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC014839|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK129533|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK294071|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK000427|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_017812|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK310236|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC104897|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##BC104899|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##AK057348|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##NM_144648|LRGUK|136332|leucine-rich repeats and guanylate kinase domain containing##AJ971941|SLC35B4|84912|solute carrier family 35, member B4##AK075368|SLC35B4|84912|solute carrier family 35, member B4##BC008413|SLC35B4|84912|solute carrier family 35, member B4##AJ315497|SLC35B4|84912|solute carrier family 35, member B4##AJ315498|SLC35B4|84912|solute carrier family 35, member B4##AK307621|SLC35B4|84912|solute carrier family 35, member B4##AK027603|SLC35B4|84912|solute carrier family 35, member B4##AK222874|SLC35B4|84912|solute carrier family 35, member B4##AB052892|SLC35B4|84912|solute carrier family 35, member B4##NM_032826|SLC35B4|84912|solute carrier family 35, member B4	0.998568	0.0	denovo_WM_7:4:0.494	denovo_WM_7:5:0.494
chr11	64846871	64847051	reg1014203.p2	4.370	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	-20959	-	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	-38543	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	-38580	+	DQ893251 DQ896580 TSC_hg19_v1_chr11_-_64851515 BC011000 AK291490	4539	-	TSC_hg19_v1_chr11_-_64851564 NM_080668	4624	-	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	4745	+	AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##NM_013299|SAC3D1|29901|SAC3 domain containing 1##DQ893251|CDCA5|113130|cell division cycle associated 5##DQ896580|CDCA5|113130|cell division cycle associated 5##BC011000|CDCA5|113130|cell division cycle associated 5##AK291490|CDCA5|113130|cell division cycle associated 5##NM_080668|CDCA5|113130|cell division cycle associated 5##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1	0.0	0.0	
chr11	77499137	77499317	reg1011126.p1	4.370	+	AB590787 AF026003 BT019907 AF005422 BC119634 BC119635 TSC_hg19_v1_chr11_-_77348840 U53454 AK315259 X91788 NM_001293	-150413	-	BC040443 NM_173039 TSC_hg19_v1_chr11_+_77300718 AB028147	-198527	+	TSC_hg19_v1_chr11_-_77184767 U51120 BC050377 BC109298 BC109299 AK293098 U24152 NM_001128620 NM_002576	-314395	-	AF380176 AB527448 TSC_hg19_v1_chr11_-_77531769 BC015360 NM_016578 AK098130	32605	-	TSC_hg19_v1_chr11_+_77532238 AF092136 AK024688 BC002752 NM_024684	32976	+	AL834171 EU446555 TSC_hg19_v1_chr11_-_77705710 CU679559 AK000455 BC018672	206457	-	AF026003|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BT019907|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AF005422|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119634|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119635|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##U53454|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AK315259|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##X91788|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##NM_001293|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC040443|AQP11|282679|aquaporin 11##NM_173039|AQP11|282679|aquaporin 11##AB028147|AQP11|282679|aquaporin 11##U51120|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC050377|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109298|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109299|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK293098|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##U24152|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_001128620|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_002576|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AF380176|RSF1|51773|remodeling and spacing factor 1##BC015360|RSF1|51773|remodeling and spacing factor 1##NM_016578|RSF1|51773|remodeling and spacing factor 1##AF092136|C11orf67|28971|chromosome 11 open reading frame 67##AK024688|C11orf67|28971|chromosome 11 open reading frame 67##BC002752|C11orf67|28971|chromosome 11 open reading frame 67##NM_024684|C11orf67|28971|chromosome 11 open reading frame 67##AL834171|INTS4|92105|integrator complex subunit 4##EU446555|INTS4|92105|integrator complex subunit 4##AK000455|INTS4|92105|integrator complex subunit 4##BC018672|INTS4|92105|integrator complex subunit 4	3.592417	0.0	denovo_WM_7:-10:0.283	denovo_WM_7:-11:0.236	denovo_WM_7:14:0.745	denovo_WM_7:-29:0.237	denovo_WM_7:-30:0.284	denovo_WM_7:85:0.294
chr12	56915473	56915579	reg1007842.p2	4.370	+	AK289471 BC025661 BC036929 AK000467 AF110330 AK303772 AF223944 AK294822 BC119767 BC119768 BC059370 BC048344 NM_013267	-33486	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	-53174	+	HQ258134 BC074913 BC117474 NM_012064	-67110	-	TSC_hg19_v1_chr12_+_56915603 NM_002898 BC072679 AK308885 AK293315 AK304540 D28483 AK299580 BC027863 CU693300	171	+	AF000422 TSC_hg19_v1_chr12_-_57006969	91390	-	AK023830 TSC_hg19_v1_chr12_-_57009380	93850	-	AK289471|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC025661|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC036929|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK000467|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF110330|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK303772|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AF223944|GLS2|27165|glutaminase 2 (liver, mitochondrial)##AK294822|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119767|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC119768|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC059370|GLS2|27165|glutaminase 2 (liver, mitochondrial)##BC048344|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_013267|GLS2|27165|glutaminase 2 (liver, mitochondrial)##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber##NM_002898|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC072679|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK308885|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK293315|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK304540|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##D28483|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AK299580|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##BC027863|RBMS2|5939|RNA binding motif, single stranded interacting protein 2##AF000422|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023830|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A	0.90029	0.0	denovo_WM_7:-7:0.560
chr14	36490467	36490574	reg1012596.p1	4.370	+	TSC_hg19_v1_chr14_+_36295599 NM_032352 AY827074 BC006250 AK297106 AK310359 AK315424	-194917	+	TSC_hg19_v1_chr14_-_36278433 AY596970 AY596971 NM_014990 NM_194301	-212125	-	AB511280 BC150596 TSC_hg19_v1_chr14_-_36278252	-212373	-	AB463855 CU677729 BX248287 TSC_hg19_v1_chr14_-_36789806 AF208857 BC016821 AK293473 BC005197 AB038523 AK315290 NM_001144891 NM_016586	299324	-	TSC_hg19_v1_chr14_-_36982983 BC042093 NM_001101341	492462	-	NM_003317 U33749	498382	-	NM_032352|BRMS1L|84312|breast cancer metastasis-suppressor 1-like##AY827074|BRMS1L|84312|breast cancer metastasis-suppressor 1-like##BC006250|BRMS1L|84312|breast cancer metastasis-suppressor 1-like##AK297106|BRMS1L|84312|breast cancer metastasis-suppressor 1-like##AK310359|BRMS1L|84312|breast cancer metastasis-suppressor 1-like##AK315424|BRMS1L|84312|breast cancer metastasis-suppressor 1-like##AY596970|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AY596971|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_014990|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##NM_194301|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##AB511280|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BC150596|RALGAPA1|253959|Ral GTPase activating protein, alpha subunit 1 (catalytic)##BX248287|MBIP|51562|MAP3K12 binding inhibitory protein 1##AF208857|MBIP|51562|MAP3K12 binding inhibitory protein 1##BC016821|MBIP|51562|MAP3K12 binding inhibitory protein 1##AK293473|MBIP|51562|MAP3K12 binding inhibitory protein 1##BC005197|MBIP|51562|MAP3K12 binding inhibitory protein 1##AB038523|MBIP|51562|MAP3K12 binding inhibitory protein 1##AK315290|MBIP|51562|MAP3K12 binding inhibitory protein 1##NM_001144891|MBIP|51562|MAP3K12 binding inhibitory protein 1##NM_016586|MBIP|51562|MAP3K12 binding inhibitory protein 1##BC042093|SFTA3|253970|surfactant associated 3##NM_001101341|SFTA3|253970|surfactant associated 3##NM_003317|NKX2-1|7080|NK2 homeobox 1##U33749|NKX2-1|7080|NK2 homeobox 1	1.053055	0.0	denovo_WM_7:-8:0.213	denovo_WM_7:-60:0.795
chr14	50787931	50788036	reg1011077.p1	4.370	+	TSC_hg19_v1_chr14_+_50779043 BC011549 NM_001003803 NM_001003805 NM_015684 AF052186 U79253	-8942	+	TSC_hg19_v1_chr14_-_50778948 CU675259 AY757363 BC006117 AK309294 AK022680 AK292627 NM_024884	-9103	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	-89883	-	BC104977 NM_004196	74633	-	TSC_hg19_v1_chr14_-_50999306 BC036013 NM_006575 NM_198794 U77129	211327	-	NM_001127713	211816	+	BC011549|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003803|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003805|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_015684|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AF052186|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##U79253|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AY757363|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC006117|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK309294|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK022680|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK292627|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##NM_024884|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC104977|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##NM_004196|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##BC036013|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_006575|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_198794|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##U77129|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_001127713|ATL1|51062|atlastin GTPase 1	0.010319	0.992034	CTCF.p2:-64:0.992
chr4	170951782	170951927	reg1013200.p1	4.370	+	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	-4349	-	BC066912 AF327560 AK308263 NM_001009554	-26932	-	AB528091 AM392880 TSC_hg19_v1_chr4_-_170679066 AK000541 AL136673 BC010367 NM_017867	-272782	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	59344	-	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	59560	-	NM_001034845 BC047551 BC144036 BC144037 BC063015	1782790	+	AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like##BC066912|MFAP3L|9848|microfibrillar-associated protein 3-like##AF327560|MFAP3L|9848|microfibrillar-associated protein 3-like##AK308263|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001009554|MFAP3L|9848|microfibrillar-associated protein 3-like##AM392880|C4orf27|54969|chromosome 4 open reading frame 27##AK000541|C4orf27|54969|chromosome 4 open reading frame 27##AL136673|C4orf27|54969|chromosome 4 open reading frame 27##BC010367|C4orf27|54969|chromosome 4 open reading frame 27##NM_017867|C4orf27|54969|chromosome 4 open reading frame 27##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	0.0	0.0	
chr6_dbb_hap3	3377565	3377745	reg1011822.p2	4.370	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.98851	0.0	denovo_WM_7:7:0.574	denovo_WM_7:23:0.244	denovo_WM_7:24:0.304
chr9	112850852	112850976	reg1013885.p2	4.370	+	TSC_hg19_v1_chr9_+_112810975 AK057098 AK304311	-39951	+	BC146863 BC171800 NM_001004065 NM_001198656 TSC_hg19_v1_chr9_+_112810942	-40005	+	TSC_hg19_v1_chr9_+_112542500 AB023137 NM_007203 NM_053016 NM_147150 AJ303079 AJ312216 AJ312217 BC140818	-308299	+	NM_001136562 AK300427	36878	+	NM_001012993	119498	-	AF065241 AF276919 CR407665 AF313911 AY004872 AF085844 BC003377 J04026 BC054866 TSC_hg19_v1_chr9_-_113018788 X77584	167838	-	AK057098|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK304311|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC146863|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC171800|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001004065|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001198656|AKAP2|11217|A kinase (PRKA) anchor protein 2##AB023137|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##NM_007203|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##NM_053016|PALM2|114299|paralemmin 2##NM_147150|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##AJ303079|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##AJ312216|PALM2|114299|paralemmin 2##AJ312217|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##BC140818|PALM2-AKAP2|445815|PALM2-AKAP2 readthrough##NM_001136562|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK300427|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001012993|C9orf152|401546|chromosome 9 open reading frame 152##AF065241|TXN|7295|thioredoxin##AF276919|TXN|7295|thioredoxin##CR407665|TXN|7295|thioredoxin##AF313911|TXN|7295|thioredoxin##AY004872|TXN|7295|thioredoxin##AF085844|TXN|7295|thioredoxin##BC003377|TXN|7295|thioredoxin##J04026|TXN|7295|thioredoxin##BC054866|TXN|7295|thioredoxin##X77584|TXN|7295|thioredoxin	1.982331	0.0	denovo_WM_7:77:0.475	denovo_WM_7:78:0.321	denovo_WM_7:93:0.311	denovo_WM_7:94:0.465
chr10	89896558	89896719	reg1014507.p2	4.369	+	TSC_hg19_v1_chr10_+_89623420 U96180	-273211	+	TSC_hg19_v1_chr10_+_89623380 BC005821	-273249	+	TSC_hg19_v1_chr10_+_89623357 NM_000314 U92436	-273412	+	CU675143 BC005364 AK002080 AK296262 NM_001031709 NM_018363	446376	-	BC042900 BC031219 NM_001010939	449875	+	NM_001198828 NM_001198829 NM_001198830 NM_004190 AK301310 AK301320 AK308224 AK310128 AK312940 AK223468 AL833751 X05997	527542	+	U96180|PTEN|5728|phosphatase and tensin homolog##BC005821|PTEN|5728|phosphatase and tensin homolog##NM_000314|PTEN|5728|phosphatase and tensin homolog##U92436|PTEN|5728|phosphatase and tensin homolog##BC005364|RNLS|55328|renalase, FAD-dependent amine oxidase##AK002080|RNLS|55328|renalase, FAD-dependent amine oxidase##AK296262|RNLS|55328|renalase, FAD-dependent amine oxidase##NM_001031709|RNLS|55328|renalase, FAD-dependent amine oxidase##NM_018363|RNLS|55328|renalase, FAD-dependent amine oxidase##BC042900|LIPJ|142910|lipase, family member J##BC031219|LIPJ|142910|lipase, family member J##NM_001010939|LIPJ|142910|lipase, family member J##NM_001198828|LIPF|8513|lipase, gastric##NM_001198829|LIPF|8513|lipase, gastric##NM_001198830|LIPF|8513|lipase, gastric##NM_004190|LIPF|8513|lipase, gastric##AK301310|LIPF|8513|lipase, gastric##AK301320|LIPF|8513|lipase, gastric##AK308224|LIPF|8513|lipase, gastric##AK310128|LIPF|8513|lipase, gastric##AK312940|LIPF|8513|lipase, gastric##AK223468|LIPF|8513|lipase, gastric##AL833751|LIPF|8513|lipase, gastric##X05997|LIPF|8513|lipase, gastric	0.587256	0.0	
chr11	68039576	68039746	reg1012781.p1	4.369	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-203	-	TSC_hg19_v1_chr11_-_68039418 AF264781	-275	-	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	-58682	-	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	40428	+	AF088027 TSC_hg19_v1_chr11_+_68115450	75775	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	188548	+	NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3	0.0	0.0	
chr11	82828597	82828773	reg1002150.p2	4.369	+	BC031316 TSC_hg19_v1_chr11_+_82783118	-45567	+	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	-45788	-	AK312323 TSC_hg19_v1_chr11_-_82782872	-45812	-	NM_015885 TSC_hg19_v1_chr11_+_82868196 AK302606 AF046935 AK025103 AB020631 BC146778 BC110432 BC065384	39720	+	AK311356 TSC_hg19_v1_chr11_-_82904700	76017	-	TSC_hg19_v1_chr11_+_82904780 DQ508934 BC045621 AK310765 EF041819	76149	+	BC031316|LOC100506233|100506233|uncharacterized LOC100506233##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##AK312323|RAB30|27314|RAB30, member RAS oncogene family##NM_015885|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK302606|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AF046935|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK025103|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AB020631|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC146778|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC110432|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC065384|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK311356|DKFZp547G183|55525|uncharacterized LOC55525##DQ508934|ANKRD42|338699|ankyrin repeat domain 42##BC045621|ANKRD42|338699|ankyrin repeat domain 42##AK310765|ANKRD42|338699|ankyrin repeat domain 42##EF041819|ANKRD42|338699|ankyrin repeat domain 42	0.0	0.0	
chr1	33112644	33112748	reg1012513.p1	4.369	+	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	-107652	+	NM_001040441	-107925	+	TSC_hg19_v1_chr1_+_32930659 AK092326 AX747483 NM_001145720	-182044	+	AY099494 TSC_hg19_v1_chr1_-_33116147 BC058843 AY158005 AY099493 AY151084 AY151085 NM_178547	3441	-	NM_001135255 NM_005610 TSC_hg19_v1_chr1_+_33116808 AK312571 AK299410 BC003092 X74262 X71810 BC053904 AK222779 BC075836 AB527301 DQ892499 DQ895712 CU678370 BT007309 AK299251 NM_001135256	4157	+	AB590598 AK302275 TSC_hg19_v1_chr1_-_33168346	55610	-	AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A##NM_001040441|ZBTB8A|653121|zinc finger and BTB domain containing 8A##NM_001145720|ZBTB8B|728116|zinc finger and BTB domain containing 8B##AY099494|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##BC058843|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY158005|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY099493|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151084|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151085|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_178547|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_001135255|RBBP4|5928|retinoblastoma binding protein 4##NM_005610|RBBP4|5928|retinoblastoma binding protein 4##AK312571|RBBP4|5928|retinoblastoma binding protein 4##AK299410|RBBP4|5928|retinoblastoma binding protein 4##BC003092|RBBP4|5928|retinoblastoma binding protein 4##X74262|RBBP4|5928|retinoblastoma binding protein 4##X71810|RBBP4|5928|retinoblastoma binding protein 4##BC053904|RBBP4|5928|retinoblastoma binding protein 4##AK222779|RBBP4|5928|retinoblastoma binding protein 4##BC075836|RBBP4|5928|retinoblastoma binding protein 4##DQ892499|RBBP4|5928|retinoblastoma binding protein 4##DQ895712|RBBP4|5928|retinoblastoma binding protein 4##BT007309|RBBP4|5928|retinoblastoma binding protein 4##AK299251|RBBP4|5928|retinoblastoma binding protein 4##NM_001135256|RBBP4|5928|retinoblastoma binding protein 4##AK302275|SYNC|81493|syncoilin, intermediate filament protein	1.993412	0.0	denovo_WM_7:-28:0.492	denovo_WM_7:-29:0.328	denovo_WM_7:-44:0.331	denovo_WM_7:-45:0.495
chr14	20810830	20811010	reg1004493.p1	4.369	+	TSC_hg19_v1_chr14_-_20801439 AK026233 AK225451 AK309183 AK225253 AK226037 AL161994 NM_021178 NM_182849	-9476	-	BC000369 BC001218 BC004435 NM_182852 BX161423 NM_182851 BX161424	-13385	-	TSC_hg19_v1_chr14_-_20774154 AK074553 NM_138376	-36779	-	TSC_hg19_v1_chr14_+_20811783 NM_001042618 NM_005484	827	+	TSC_hg19_v1_chr14_+_20811793 AK290079 AK300971 AK001980 AJ236912	876	+	BC143812 BC126107 BC143815 NM_007110 U86136 TSC_hg19_v1_chr14_-_20881589	70663	-	AK026233|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225451|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK309183|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK225253|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK226037|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AL161994|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_021178|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182849|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC000369|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC001218|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BC004435|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182852|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BX161423|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##NM_182851|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##BX161424|CCNB1IP1|57820|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase##AK074553|TTC5|91875|tetratricopeptide repeat domain 5##NM_138376|TTC5|91875|tetratricopeptide repeat domain 5##NM_001042618|PARP2|10038|poly (ADP-ribose) polymerase 2##NM_005484|PARP2|10038|poly (ADP-ribose) polymerase 2##AK290079|PARP2|10038|poly (ADP-ribose) polymerase 2##AK300971|PARP2|10038|poly (ADP-ribose) polymerase 2##AK001980|PARP2|10038|poly (ADP-ribose) polymerase 2##AJ236912|PARP2|10038|poly (ADP-ribose) polymerase 2##BC143812|TEP1|7011|telomerase-associated protein 1##BC126107|TEP1|7011|telomerase-associated protein 1##BC143815|TEP1|7011|telomerase-associated protein 1##NM_007110|TEP1|7011|telomerase-associated protein 1##U86136|TEP1|7011|telomerase-associated protein 1	0.97401	0.0	denovo_WM_7:-26:0.543	denovo_WM_7:-28:0.284
chr5	122180820	122180913	reg1011358.p2	4.369	+	TSC_hg19_v1_chr5_+_122110786 AY272044 AK002170 AB464236 BT009841 DQ890933 DQ894096 AF043453	-70054	+	AK023581 TSC_hg19_v1_chr5_+_122110776 BC003382 AF065482 AK222968	-70097	+	TSC_hg19_v1_chr5_+_122110737 AK023716 NM_003100	-70122	+	NM_014035 BC010886 BC069012 TSC_hg19_v1_chr5_+_122181284 AF139461 AY358098 CU679837 CU686699 AY044655	381	+	CU678110 TSC_hg19_v1_chr5_-_122372375 AK290321 BC002678	191498	-	TSC_hg19_v1_chr5_-_122372418 AK304053 NM_000943	191558	-	AY272044|SNX2|6643|sorting nexin 2##AK002170|SNX2|6643|sorting nexin 2##BT009841|SNX2|6643|sorting nexin 2##DQ890933|SNX2|6643|sorting nexin 2##DQ894096|SNX2|6643|sorting nexin 2##AF043453|SNX2|6643|sorting nexin 2##AK023581|SNX2|6643|sorting nexin 2##BC003382|SNX2|6643|sorting nexin 2##AF065482|SNX2|6643|sorting nexin 2##AK222968|SNX2|6643|sorting nexin 2##AK023716|SNX2|6643|sorting nexin 2##NM_003100|SNX2|6643|sorting nexin 2##NM_014035|SNX24|28966|sorting nexin 24##BC010886|SNX24|28966|sorting nexin 24##BC069012|SNX24|28966|sorting nexin 24##AF139461|SNX24|28966|sorting nexin 24##AY358098|SNX24|28966|sorting nexin 24##AY044655|SNX24|28966|sorting nexin 24##AK290321|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##BC002678|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##AK304053|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_000943|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)	0.04832	0.0	
chr5	179344177	179344298	reg1012247.p1	4.369	+	TSC_hg19_v1_chr5_-_179334854 AB014576 BC129994 NM_015043 NM_198868	-9385	-	AB449893 TSC_hg19_v1_chr5_-_179334837 AB463306	-9407	-	TSC_hg19_v1_chr5_+_179286046 BC040901	-58242	+	AK313089 BC017100 TSC_hg19_v1_chr5_-_179498743 BC082267	154454	-	TSC_hg19_v1_chr5_-_179499095 BC113864 BC114472 AB209800 AY083998 NM_018434 BC108306	154828	-	TSC_hg19_v1_chr5_-_179636160 NM_175062 BC036802	291939	-	AB014576|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##BC129994|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##NM_015043|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##NM_198868|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##AB449893|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)##AK313089|RNF130|55819|ring finger protein 130##BC017100|RNF130|55819|ring finger protein 130##BC082267|RNF130|55819|ring finger protein 130##BC113864|RNF130|55819|ring finger protein 130##BC114472|RNF130|55819|ring finger protein 130##AB209800|RNF130|55819|ring finger protein 130##AY083998|RNF130|55819|ring finger protein 130##NM_018434|RNF130|55819|ring finger protein 130##BC108306|RNF130|55819|ring finger protein 130##NM_175062|RASGEF1C|255426|RasGEF domain family, member 1C##BC036802|RASGEF1C|255426|RasGEF domain family, member 1C	0.997019	0.0	denovo_WM_7:-39:0.884
chr8	105371964	105372095	reg1009249.p1	4.369	+	TSC_hg19_v1_chr8_+_105352053 AF277290 AF305068 AK095417 BC069349 NM_030788	-19977	+	NM_014677 AK307790 AB018294 BC043144 AK308831 BC018057 AB384521 CU692140	-540454	+	AK126939 NM_001100117	-859054	+	CU689878 BC034395 D78011 NM_001385 TSC_hg19_v1_chr8_-_105479284	107186	-	CU689274 DQ892323 DQ895525 BC032109 AK289752 AF166350 TSC_hg19_v1_chr8_-_105601191 CR749434 AF064841	229146	-	TSC_hg19_v1_chr8_-_105601235 AK299374 NM_001135703 NM_013437	229218	-	AF277290|TM7SF4|81501|transmembrane 7 superfamily member 4##AF305068|TM7SF4|81501|transmembrane 7 superfamily member 4##AK095417|TM7SF4|81501|transmembrane 7 superfamily member 4##BC069349|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_030788|TM7SF4|81501|transmembrane 7 superfamily member 4##NM_014677|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK307790|RIMS2|9699|regulating synaptic membrane exocytosis 2##AB018294|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC043144|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK308831|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC018057|RIMS2|9699|regulating synaptic membrane exocytosis 2##AK126939|RIMS2|9699|regulating synaptic membrane exocytosis 2##NM_001100117|RIMS2|9699|regulating synaptic membrane exocytosis 2##BC034395|DPYS|1807|dihydropyrimidinase##D78011|DPYS|1807|dihydropyrimidinase##NM_001385|DPYS|1807|dihydropyrimidinase##DQ892323|LRP12|29967|low density lipoprotein receptor-related protein 12##DQ895525|LRP12|29967|low density lipoprotein receptor-related protein 12##BC032109|LRP12|29967|low density lipoprotein receptor-related protein 12##AK289752|LRP12|29967|low density lipoprotein receptor-related protein 12##AF166350|LRP12|29967|low density lipoprotein receptor-related protein 12##CR749434|LRP12|29967|low density lipoprotein receptor-related protein 12##AF064841|LRP12|29967|low density lipoprotein receptor-related protein 12##AK299374|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_001135703|LRP12|29967|low density lipoprotein receptor-related protein 12##NM_013437|LRP12|29967|low density lipoprotein receptor-related protein 12	0.983969	0.0	denovo_WM_7:-96:0.560	denovo_WM_7:-97:0.413
chr10	16712719	16712794	reg1012703.p1	4.368	+	NM_001010908	-148753	-	AK314910 BC015092 NM_001001484 NM_030664 BC050411 BX648556 AK095486 TSC_hg19_v1_chr10_+_16479008 AF212237	-233771	+	BC061585 TSC_hg19_v1_chr10_-_15902498 AF176916 AL833873 BC020605 BC067799 AK023459 NM_024948	-810265	-	TSC_hg19_v1_chr10_-_16859375 AK292911 BC008691	146603	-	TSC_hg19_v1_chr10_-_16859397 AK225681 AK312520	146638	-	TSC_hg19_v1_chr10_-_16859451 BC015644 BC005993 BC107898 BX647733 NM_012425 NM_152724	146679	-	NM_001010908|C1QL3|389941|complement component 1, q subcomponent-like 3##AK314910|PTER|9317|phosphotriesterase related##BC015092|PTER|9317|phosphotriesterase related##NM_001001484|PTER|9317|phosphotriesterase related##NM_030664|PTER|9317|phosphotriesterase related##BC050411|PTER|9317|phosphotriesterase related##BX648556|PTER|9317|phosphotriesterase related##AK095486|PTER|9317|phosphotriesterase related##AF212237|PTER|9317|phosphotriesterase related##BC061585|FAM188A|80013|family with sequence similarity 188, member A##AF176916|FAM188A|80013|family with sequence similarity 188, member A##AL833873|FAM188A|80013|family with sequence similarity 188, member A##BC020605|FAM188A|80013|family with sequence similarity 188, member A##BC067799|FAM188A|80013|family with sequence similarity 188, member A##AK023459|FAM188A|80013|family with sequence similarity 188, member A##NM_024948|FAM188A|80013|family with sequence similarity 188, member A##AK292911|RSU1|6251|Ras suppressor protein 1##BC008691|RSU1|6251|Ras suppressor protein 1##AK225681|RSU1|6251|Ras suppressor protein 1##AK312520|RSU1|6251|Ras suppressor protein 1##BC015644|RSU1|6251|Ras suppressor protein 1##BC005993|RSU1|6251|Ras suppressor protein 1##BC107898|RSU1|6251|Ras suppressor protein 1##BX647733|RSU1|6251|Ras suppressor protein 1##NM_012425|RSU1|6251|Ras suppressor protein 1##NM_152724|RSU1|6251|Ras suppressor protein 1	0.0	0.0	
chr2	16836128	16836263	reg1009818.p1	4.368	+	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-754028	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-754200	+	BC002892 TSC_hg19_v1_chr2_-_16081802 S49953	-754422	-	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	10949	-	DQ860102 NM_001099218	863510	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	885692	+	BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002892|MYCNOS|10408|MYCN opposite strand/antisense RNA (non-protein coding)##S49953|MYCNOS|10408|MYCN opposite strand/antisense RNA (non-protein coding)##BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1	0.0	0.0	
chr4	39050140	39050283	reg1007092.p2	4.368	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-3773	+	BC030803 BC060512 AK026888 NM_024943	-16201	-	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-180820	+	AK289785 NM_015990 NM_199039	13640	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	133884	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	317741	-	NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa	0.999587	0.0	
chr6	21752860	21752977	reg1008708.p2	4.368	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-86259	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-158546	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1218195	+	BC015850 NM_000948	544811	-	X54394 X54393 GQ305133 M58594 NM_001163558	550129	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	816807	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	0.969878	0.0	denovo_WM_7:40:0.422	denovo_WM_7:42:0.446
chr8	28269756	28269936	reg1002289.p1	4.368	+	AK002050 AK023418 NM_018660 AB057659 AB073627	-25885	-	BC001237 TSC_hg19_v1_chr8_-_28243694	-26204	-	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-95121	+	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	77933	-	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	81919	+	TSC_hg19_v1_chr8_+_28559032 AB011091	289229	+	AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC001237|ZNF395|55893|zinc finger protein 395##NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3	0.0	0.0	
chr1	171612074	171612159	reg1012378.p1	4.367	+	AF253978 AL096857 TSC_hg19_v1_chr1_+_171481269 AF488829	-130864	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	-157422	+	BC002780 NM_002022 Z11737	-328688	+	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	9684	-	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	99119	-	AK092254 TSC_hg19_v1_chr1_+_171711293	99171	+	AF253978|PRRC2C|23215|proline-rich coiled-coil 2C##AL096857|PRRC2C|23215|proline-rich coiled-coil 2C##AF488829|PRRC2C|23215|proline-rich coiled-coil 2C##BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4	0.999873	0.0	denovo_WM_7:-78:0.295	denovo_WM_7:-79:0.295	denovo_WM_7:-80:0.295
chr16	53099113	53099258	reg1012907.p1	4.367	+	TSC_hg19_v1_chr16_+_53088951 AY647157 BC022889 NM_025134	-10304	+	AK299202 NM_001146188	-517472	-	NM_001080430	-518380	-	TSC_hg19_v1_chr16_+_53133091 AK092208 AX747409 BC033770	33914	+	TSC_hg19_v1_chr16_+_53164923 DQ333316	65875	+	NM_001207030	305855	-	AY647157|CHD9|80205|chromodomain helicase DNA binding protein 9##BC022889|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_025134|CHD9|80205|chromodomain helicase DNA binding protein 9##AK299202|TOX3|27324|TOX high mobility group box family member 3##NM_001146188|TOX3|27324|TOX high mobility group box family member 3##NM_001080430|TOX3|27324|TOX high mobility group box family member 3##AK092208|CHD9|80205|chromodomain helicase DNA binding protein 9##BC033770|CHD9|80205|chromodomain helicase DNA binding protein 9##DQ333316|CHD9|80205|chromodomain helicase DNA binding protein 9##NM_001207030|LOC643802|643802|u3 small nucleolar ribonucleoprotein protein MPP10-like	0.0	0.0	
chr2	122360838	122360977	reg1011675.p2	4.367	+	AK297259 TSC_hg19_v1_chr2_-_122247924	-112988	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-201752	-	TSC_hg19_v1_chr2_-_122042779 AF198488 BC064698 AL137740 NM_014553	-318134	-	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	46115	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	46738	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	133558	-	AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##AF198488|TFCP2L1|29842|transcription factor CP2-like 1##BC064698|TFCP2L1|29842|transcription factor CP2-like 1##AL137740|TFCP2L1|29842|transcription factor CP2-like 1##NM_014553|TFCP2L1|29842|transcription factor CP2-like 1##BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein	0.031331	0.0	
chr3	195115549	195115686	reg1016270.p1	4.367	+	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	-123767	-	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	-708114	+	TSC_hg19_v1_chr3_+_194406619 NM_153690	-708994	+	AB385269 D26069 AJ238248 TSC_hg19_v1_chr3_-_195163773 AK290369 BC060767 AK222635 NM_012287	48085	-	TSC_hg19_v1_chr3_-_195270150 BC007655 BC066921 NM_006241	154496	-	TSC_hg19_v1_chr3_-_195306274 BT019860 BT019861 CR456838 CR541773 CU675645 DQ892668 DQ896124	190685	-	BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##D26069|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AJ238248|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK290369|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC060767|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##AK222635|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##NM_012287|ACAP2|23527|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2##BC007655|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BC066921|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##NM_006241|PPP1R2|5504|protein phosphatase 1, regulatory (inhibitor) subunit 2##BT019860|APOD|347|apolipoprotein D##BT019861|APOD|347|apolipoprotein D##CR456838|APOD|347|apolipoprotein D##CR541773|APOD|347|apolipoprotein D##DQ892668|APOD|347|apolipoprotein D##DQ896124|APOD|347|apolipoprotein D	0.991631	0.0	denovo_WM_7:37:0.228	denovo_WM_7:38:0.228	denovo_WM_7:39:0.228	denovo_WM_7:40:0.228
chr3	44552077	44552163	reg1007053.p1	4.367	+	TSC_hg19_v1_chr3_-_44552109 BC014381	-24	-	TSC_hg19_v1_chr3_-_44519163 AY295873 NM_181489	-32961	-	TSC_hg19_v1_chr3_-_44519141 AK310588	-32996	-	TSC_hg19_v1_chr3_-_44552121 AK296954	3	-	TSC_hg19_v1_chr3_+_44596684 AK291285 AY280798 NM_018651 NM_025169 BC063020 AK022800 BC010555	44552	+	TSC_hg19_v1_chr3_+_44626458 AK094189 NM_173658	74336	+	BC014381|ZNF852|285346|zinc finger protein 852##AY295873|ZNF445|353274|zinc finger protein 445##NM_181489|ZNF445|353274|zinc finger protein 445##AK310588|ZNF445|353274|zinc finger protein 445##AK296954|ZNF852|285346|zinc finger protein 852##AK291285|ZNF167|55888|zinc finger protein 167##AY280798|ZNF167|55888|zinc finger protein 167##NM_018651|ZNF167|55888|zinc finger protein 167##NM_025169|ZNF167|55888|zinc finger protein 167##BC063020|ZNF167|55888|zinc finger protein 167##AK022800|ZNF167|55888|zinc finger protein 167##BC010555|ZNF167|55888|zinc finger protein 167##AK094189|ZNF660|285349|zinc finger protein 660##NM_173658|ZNF660|285349|zinc finger protein 660	0.0	0.0	
chr13	111805997	111806090	reg1013777.p2	4.366	+	AK300157 TSC_hg19_v1_chr13_+_111806035	-7	+	TSC_hg19_v1_chr13_+_111767658 BC060776 NM_001113511 NM_001113512 NM_145735 BC033905 AL834228 CU687414 CU689800 EU832819 GQ129214	-38314	+	AK000100 NM_017664 TSC_hg19_v1_chr13_-_111567417	-238627	-	TSC_hg19_v1_chr13_+_111806041 AB177849 NM_003899	8	+	TSC_hg19_v1_chr13_+_111806070 D63476	35	+	NM_001113513 BC050521	33143	+	AK300157|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##BC060776|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_001113511|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_001113512|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_145735|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##BC033905|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AL834228|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##EU832819|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##GQ129214|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##AK000100|ANKRD10|55608|ankyrin repeat domain 10##NM_017664|ANKRD10|55608|ankyrin repeat domain 10##AB177849|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_003899|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##D63476|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##NM_001113513|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7##BC050521|ARHGEF7|8874|Rho guanine nucleotide exchange factor (GEF) 7	0.0	0.0	
chr19	18388326	18388446	reg1010764.p1	4.366	+	AK057466 AK302431 AL136867 BC112932 NM_001145304 NM_001145305 NM_025249	-3144	-	NM_000923 U66346	-29377	-	AK300888 AK300983 TSC_hg19_v1_chr19_-_18337249 NM_001098818 U88713	-51127	-	TSC_hg19_v1_chr19_+_18391286 AB593186	2895	+	BC169275 TSC_hg19_v1_chr19_-_18391478	3073	-	BC169273 TSC_hg19_v1_chr19_-_18392160 X51346	3719	-	AK057466|KIAA1683|80726|KIAA1683##AK302431|KIAA1683|80726|KIAA1683##AL136867|KIAA1683|80726|KIAA1683##BC112932|KIAA1683|80726|KIAA1683##NM_001145304|KIAA1683|80726|KIAA1683##NM_001145305|KIAA1683|80726|KIAA1683##NM_025249|KIAA1683|80726|KIAA1683##NM_000923|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U66346|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300888|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##AK300983|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##NM_001098818|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88713|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##BC169273|JUND|3727|jun D proto-oncogene##X51346|JUND|3727|jun D proto-oncogene	0.994305	0.304002	denovo_WM_7:-18:0.891	CTCF.p2:49:0.304
chr2	160471140	160471258	reg1013607.p1	4.366	+	AK093494 AX748164 NM_152528 AK129983 NM_001128213 TSC_hg19_v1_chr2_-_160143234 BC029520 NM_001128212	-328051	-	TSC_hg19_v1_chr2_+_159825151 BC037329 NM_001145909 NM_033394 AK128859	-646052	+	AY324399 NM_001017920 AF086541 BC140719 BC127682 BC127683	-819364	+	AK127551 BC107570 TSC_hg19_v1_chr2_-_160472070	815	-	BX647250 AL834381 TSC_hg19_v1_chr2_-_160473021 NM_013450 AB040909	1820	-	TSC_hg19_v1_chr2_-_160568946 BX641037 BX537650	97707	-	AK093494|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_152528|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##AK129983|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128213|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BC029520|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128212|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BC037329|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##NM_001145909|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##NM_033394|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##AK128859|TANC1|85461|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1##AY324399|DAPL1|92196|death associated protein-like 1##NM_001017920|DAPL1|92196|death associated protein-like 1##AF086541|DAPL1|92196|death associated protein-like 1##BC140719|DAPL1|92196|death associated protein-like 1##BC127682|DAPL1|92196|death associated protein-like 1##BC127683|DAPL1|92196|death associated protein-like 1##AK127551|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BC107570|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BX647250|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AL834381|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##NM_013450|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AB040909|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BX641037|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B	0.487414	0.0	denovo_WM_7:-54:0.285
chr3	16584847	16584991	reg1011609.p1	4.366	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-29695	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-29901	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-278211	+	BX648638 AK303026 NM_001190811	61351	-	U65918 U66726 U66078 BC027595 NM_001351	62047	-	AB029015 NM_001144382	341532	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	0.95465	0.0	denovo_WM_7:7:0.237	denovo_WM_7:8:0.646
chr3	45008547	45008665	reg1014094.p1	4.366	+	NM_003241 AK125536 AK312936 AK300523 BC007003 L34840 U31905 U79008 Y09559 CU675487 DQ896505 EU176444	-92473	+	TSC_hg19_v1_chr3_+_44903403 AL834253 BC019851 NM_144638	-105215	+	TSC_hg19_v1_chr3_+_44803285 AB035898 AK307674 BC117174 BC143752	-205293	+	BC015467 TSC_hg19_v1_chr3_-_45017670 AF247703 NM_001135179 NM_016598	9035	-	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	9131	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	9154	+	NM_003241|TGM4|7047|transglutaminase 4 (prostate)##AK125536|TGM4|7047|transglutaminase 4 (prostate)##AK312936|TGM4|7047|transglutaminase 4 (prostate)##AK300523|TGM4|7047|transglutaminase 4 (prostate)##BC007003|TGM4|7047|transglutaminase 4 (prostate)##L34840|TGM4|7047|transglutaminase 4 (prostate)##U31905|TGM4|7047|transglutaminase 4 (prostate)##U79008|TGM4|7047|transglutaminase 4 (prostate)##Y09559|TGM4|7047|transglutaminase 4 (prostate)##DQ896505|TGM4|7047|transglutaminase 4 (prostate)##EU176444|TGM4|7047|transglutaminase 4 (prostate)##AL834253|TMEM42|131616|transmembrane protein 42##BC019851|TMEM42|131616|transmembrane protein 42##NM_144638|TMEM42|131616|transmembrane protein 42##AB035898|KIF15|56992|kinesin family member 15##AK307674|KIF15|56992|kinesin family member 15##BC117174|KIF15|56992|kinesin family member 15##BC143752|KIF15|56992|kinesin family member 15##BC015467|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AF247703|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_001135179|ZDHHC3|51304|zinc finger, DHHC-type containing 3##NM_016598|ZDHHC3|51304|zinc finger, DHHC-type containing 3##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7	0.958625	0.0	denovo_WM_7:-10:0.892
chr5	138616901	138617012	reg1013245.p1	4.366	+	TSC_hg19_v1_chr5_+_138609789 BC036498 CR749625 AK293952 AJ224166 AJ224167 AJ224168 AJ224169 AJ224170	-7152	+	AK307872 NM_001194954 NM_199189 TSC_hg19_v1_chr5_+_138609537	-7468	+	TSC_hg19_v1_chr5_-_138534058 AJ299442 AK074624 NM_001037633 NM_022464	-82910	-	TSC_hg19_v1_chr5_+_138629336 NM_018834	12383	+	TSC_hg19_v1_chr5_+_138629428 BX537365 AK316420 CR749210 NM_001194955 NM_001194956 AK299399	12503	+	TSC_hg19_v1_chr5_+_138629669 AK057645 AB018266	12719	+	BC036498|MATR3|9782|matrin 3##CR749625|MATR3|9782|matrin 3##AK293952|MATR3|9782|matrin 3##AJ224166|MATR3|9782|matrin 3##AJ224167|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224168|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AJ224169|MATR3|9782|matrin 3##AJ224170|SNHG4|724102|small nucleolar RNA host gene 4 (non-protein coding)##AK307872|MATR3|9782|matrin 3##NM_001194954|MATR3|9782|matrin 3##NM_199189|MATR3|9782|matrin 3##AJ299442|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##AK074624|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_001037633|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_022464|SIL1|64374|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)##NM_018834|MATR3|9782|matrin 3##BX537365|MATR3|9782|matrin 3##AK316420|MATR3|9782|matrin 3##CR749210|MATR3|9782|matrin 3##NM_001194955|MATR3|9782|matrin 3##NM_001194956|MATR3|9782|matrin 3##AK299399|MATR3|9782|matrin 3##AK057645|MATR3|9782|matrin 3##AB018266|MATR3|9782|matrin 3	1.863228	0.0	denovo_WM_7:-74:0.208	denovo_WM_7:83:0.291	denovo_WM_7:98:0.461
chr1	144697659	144697768	reg1015559.p1	4.365	+	AY894562 AY894567 AY894568 AY894572 AY894574 NM_001037675	-82755	+	TSC_hg19_v1_chr1_+_144593695 BX538005 AK308678	-104015	+	TSC_hg19_v1_chr1_-_144521169 AK090660 AX746564	-176484	-	CU687328 TSC_hg19_v1_chr1_-_144931874 BC078660	234098	-	BC132717 TSC_hg19_v1_chr1_-_144932057 BC004860 NM_001002811	234334	-	AL832024 AB042556 AL831815 TSC_hg19_v1_chr1_-_144994880	297148	-	AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894567|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894568|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894572|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894574|NBPF9|400818|neuroblastoma breakpoint family, member 9##NM_001037675|NBPF9|400818|neuroblastoma breakpoint family, member 9##BX538005|NBPF10|100132406|neuroblastoma breakpoint family, member 10##AK090660|FAM91A2|57234|family with sequence similarity 91, member A2##BC078660|PDE4DIP|9659|phosphodiesterase 4D interacting protein##BC132717|PDE4DIP|9659|phosphodiesterase 4D interacting protein##BC004860|PDE4DIP|9659|phosphodiesterase 4D interacting protein##NM_001002811|PDE4DIP|9659|phosphodiesterase 4D interacting protein##AL832024|PDE4DIP|9659|phosphodiesterase 4D interacting protein##AL831815|PDE4DIP|9659|phosphodiesterase 4D interacting protein	0.0	0.0	
chr1	212570228	212570337	reg1013050.p1	4.365	+	AK302202 NM_001199756	-95135	+	TSC_hg19_v1_chr1_+_212459262 BC022474 AB527512 DQ892361 DQ895568	-110925	+	BC110883 TSC_hg19_v1_chr1_+_212459259	-111068	+	AK295224 CR457268 CU675347 TSC_hg19_v1_chr1_-_212588229 BC006320	17871	-	TSC_hg19_v1_chr1_-_212588235 AK001736	17953	-	TSC_hg19_v1_chr1_-_212588248 AK297200 NM_001198862 AK024066 NM_018252	17970	-	AK302202|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##NM_001199756|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC022474|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##DQ892361|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##DQ895568|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##BC110883|PPP2R5A|5525|protein phosphatase 2, regulatory subunit B', alpha##AK295224|TMEM206|55248|transmembrane protein 206##CR457268|TMEM206|55248|transmembrane protein 206##BC006320|TMEM206|55248|transmembrane protein 206##AK001736|TMEM206|55248|transmembrane protein 206##AK297200|TMEM206|55248|transmembrane protein 206##NM_001198862|TMEM206|55248|transmembrane protein 206##AK024066|TMEM206|55248|transmembrane protein 206##NM_018252|TMEM206|55248|transmembrane protein 206	0.0	0.0	
chr1	234624304	234624398	reg1001419.p1	4.365	+	NM_005646 U38847 TSC_hg19_v1_chr1_-_234614871	-9491	-	NM_001206641 TSC_hg19_v1_chr1_+_234509261 BC052810 BC035925 BC116455 NM_001012985 BC064905 BC025793	-114979	+	TSC_hg19_v1_chr1_+_234350005 BC037878	-274345	+	TSC_hg19_v1_chr1_-_234743489 BC020516	119175	-	TSC_hg19_v1_chr1_-_234743841 AK299768	119480	-	TSC_hg19_v1_chr1_-_234743861 AK309579	119507	-	NM_005646|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##U38847|TARBP1|6894|TAR (HIV-1) RNA binding protein 1##NM_001206641|C1orf31|388753|chromosome 1 open reading frame 31##BC052810|C1orf31|388753|chromosome 1 open reading frame 31##BC035925|C1orf31|388753|chromosome 1 open reading frame 31##BC116455|C1orf31|388753|chromosome 1 open reading frame 31##NM_001012985|C1orf31|388753|chromosome 1 open reading frame 31##BC064905|C1orf31|388753|chromosome 1 open reading frame 31##BC025793|C1orf31|388753|chromosome 1 open reading frame 31##BC037878|SLC35F3|148641|solute carrier family 35, member F3##BC020516|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2	0.0	0.0	
chr16	83480650	83480743	reg1003643.p2	4.365	+	TSC_hg19_v1_chr16_+_82660641 AK304733 BC012615 AB384879 CU688968 DQ891713 DQ894890	-820027	+	AK304592 TSC_hg19_v1_chr16_+_82660573 AK295886 AK298612 AK307862 EU190357 EU190358 BC028624 BC030653	-820107	+	TSC_hg19_v1_chr16_+_82660390 NM_001220488 NM_001220489 NM_001220490 NM_001220491 NM_001220492 NM_001257	-820302	+	TSC_hg19_v1_chr16_+_83841582 NM_001537 BX537440 BX648972 AF068754	360904	+	TSC_hg19_v1_chr16_+_83841642 BC007515 AY320409 AK172732 AB463720 EU831680	360960	+	BC052592 NM_012213 TSC_hg19_v1_chr16_+_83932732 AF090834 AF153679 BC000286 AF097832	452073	+	AK304733|CDH13|1012|cadherin 13, H-cadherin (heart)##BC012615|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ891713|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ894890|CDH13|1012|cadherin 13, H-cadherin (heart)##AK304592|CDH13|1012|cadherin 13, H-cadherin (heart)##AK295886|CDH13|1012|cadherin 13, H-cadherin (heart)##AK298612|CDH13|1012|cadherin 13, H-cadherin (heart)##AK307862|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190357|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190358|CDH13|1012|cadherin 13, H-cadherin (heart)##BC028624|CDH13|1012|cadherin 13, H-cadherin (heart)##BC030653|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220488|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220489|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220490|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220491|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220492|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001257|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001537|HSBP1|3281|heat shock factor binding protein 1##BX537440|HSBP1|3281|heat shock factor binding protein 1##BX648972|HSBP1|3281|heat shock factor binding protein 1##AF068754|HSBP1|3281|heat shock factor binding protein 1##BC007515|HSBP1|3281|heat shock factor binding protein 1##AY320409|HSBP1|3281|heat shock factor binding protein 1##AK172732|HSBP1|3281|heat shock factor binding protein 1##EU831680|HSBP1|3281|heat shock factor binding protein 1##BC052592|MLYCD|23417|malonyl-CoA decarboxylase##NM_012213|MLYCD|23417|malonyl-CoA decarboxylase##AF090834|MLYCD|23417|malonyl-CoA decarboxylase##AF153679|MLYCD|23417|malonyl-CoA decarboxylase##BC000286|MLYCD|23417|malonyl-CoA decarboxylase##AF097832|MLYCD|23417|malonyl-CoA decarboxylase	3.243326	0.0	denovo_WM_7:12:0.266	denovo_WM_7:13:0.717	denovo_WM_7:-14:0.238	denovo_WM_7:28:0.853	denovo_WM_7:-29:0.308
chr1	112936927	112937021	reg1004255.p2	4.364	+	AY863198 AF120491 NM_004980 NM_172198	-405252	-	TSC_hg19_v1_chr1_+_112298524 AK301697 AK001506 BC031062 BC011556 AF106019 AF155803 AK314312 DQ892249 DQ895449 CU679958	-638425	+	AL137199 NM_198926 AK293989 TSC_hg19_v1_chr1_-_112298450	-638539	-	NM_018704 TSC_hg19_v1_chr1_+_112938844 AK023340	1852	+	TSC_hg19_v1_chr1_+_112938871 BC016029 AK022544 AK092791 AX747733	1894	+	AB045116 NM_004185	73065	+	AF120491|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_004980|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##NM_172198|KCND3|3752|potassium voltage-gated channel, Shal-related subfamily, member 3##AK301697|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK001506|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC031062|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC011556|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF106019|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF155803|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AK314312|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ892249|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##DQ895449|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AL137199|FAM212B|55924|family with sequence similarity 212, member B##NM_198926|FAM212B|55924|family with sequence similarity 212, member B##AK293989|FAM212B|55924|family with sequence similarity 212, member B##NM_018704|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK023340|CTTNBP2NL|55917|CTTNBP2 N-terminal like##BC016029|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK022544|CTTNBP2NL|55917|CTTNBP2 N-terminal like##AK092791|LOC100129406|100129406|uncharacterized LOC100129406##AB045116|WNT2B|7482|wingless-type MMTV integration site family, member 2B##NM_004185|WNT2B|7482|wingless-type MMTV integration site family, member 2B	0.0	0.0	
chr1	66808405	66808498	reg1010827.p1	4.364	+	TSC_hg19_v1_chr1_+_66798096 AK294441	-10356	+	L12685 NM_001037339 M97515 L12686 TSC_hg19_v1_chr1_+_66797927	-10598	+	AB209081 NM_001037340 AK290006	-350048	+	AK299941 AK298970 NM_032291 TSC_hg19_v1_chr1_+_66999843 AB210039 AL136561	191433	+	TSC_hg19_v1_chr1_+_67218141 NM_152665 AK098192	409673	+	TSC_hg19_v1_chr1_+_67218151 BC106885 AK307100 AK307878	409714	+	AK294441|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037339|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##M97515|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##L12686|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AB209081|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037340|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK290006|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK299941|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AK298970|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##NM_032291|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AB210039|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AL136561|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##NM_152665|TCTEX1D1|200132|Tctex1 domain containing 1##AK098192|TCTEX1D1|200132|Tctex1 domain containing 1##BC106885|TCTEX1D1|200132|Tctex1 domain containing 1##AK307100|TCTEX1D1|200132|Tctex1 domain containing 1##AK307878|TCTEX1D1|200132|Tctex1 domain containing 1	0.984712	0.0	denovo_WM_7:-28:0.538	denovo_WM_7:-29:0.347
chr17	7427366	7427477	reg1012566.p2	4.364	+	TSC_hg19_v1_chr17_+_7388113 CU688278	-39305	+	TSC_hg19_v1_chr17_+_7387773 BC137231 BC067295	-39566	+	AK293777 TSC_hg19_v1_chr17_+_7387688 NM_000937 X63564	-39729	+	BC019047 NM_003809 NM_172089 BC071837 AF055872 AY358870 AY081051 BC104420 AF030099	24992	+	TSC_hg19_v1_chr17_+_7461620 NM_001198622 NM_001198623 NM_001198624 NM_003808 NM_172087 NM_172088	34195	+	AK225556 AK314518 AK301221 AF046888 AF114011 AY081050 AF114013 AF114012 AF184972 AY358880 BC008042 TSC_hg19_v1_chr17_+_7462318 DQ149579 EF211088 EU831984 EU832077 AF136294 BT019561 BT019562 CR542040 CR542073	34789	+	BC137231|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##BC067295|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##AK293777|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##NM_000937|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##X63564|POLR2A|5430|polymerase (RNA) II (DNA directed) polypeptide A, 220kDa##BC019047|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##NM_003809|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##NM_172089|TNFSF12-TNFSF13|407977|TNFSF12-TNFSF13 readthrough##BC071837|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AF055872|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AY358870|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AY081051|TNFSF12-TNFSF13|407977|TNFSF12-TNFSF13 readthrough##BC104420|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##AF030099|TNFSF12|8742|tumor necrosis factor (ligand) superfamily, member 12##NM_001198622|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_001198623|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_001198624|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_003808|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_172087|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##NM_172088|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK225556|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK314518|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AK301221|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF046888|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114011|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AY081050|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114013|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF114012|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF184972|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AY358880|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BC008042|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##DQ149579|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EF211088|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EU831984|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##EU832077|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##AF136294|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BT019561|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##BT019562|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##CR542040|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13##CR542073|TNFSF13|8741|tumor necrosis factor (ligand) superfamily, member 13	0.997826	0.0	
chr19	39220527	39220661	reg1010963.p2	4.364	+	AK023756 TSC_hg19_v1_chr19_+_39155341	-65319	+	TSC_hg19_v1_chr19_+_39138349 BC005033 GU987085 AB590161 CU678876 DQ431186 DQ893439 DQ896777 D89980	-82223	+	TSC_hg19_v1_chr19_+_39138326 AK299955 AK304554 AK309361 AK309364 BX647098	-82273	+	TSC_hg19_v1_chr19_-_39227632 AK125713	7028	-	AK127398 NM_144691	14519	-	U06643 BC061588 BC073743 L07769 NM_002307	43556	-	BC005033|ACTN4|81|actinin, alpha 4##GU987085|ACTN4|81|actinin, alpha 4##DQ431186|ACTN4|81|actinin, alpha 4##DQ893439|ACTN4|81|actinin, alpha 4##DQ896777|ACTN4|81|actinin, alpha 4##D89980|ACTN4|81|actinin, alpha 4##AK299955|ACTN4|81|actinin, alpha 4##AK304554|ACTN4|81|actinin, alpha 4##AK309361|ACTN4|81|actinin, alpha 4##AK309364|ACTN4|81|actinin, alpha 4##BX647098|ACTN4|81|actinin, alpha 4##AK125713|CAPN12|147968|calpain 12##AK127398|CAPN12|147968|calpain 12##NM_144691|CAPN12|147968|calpain 12##U06643|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##BC061588|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##BC073743|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##L07769|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##NM_002307|LGALS7|3963|lectin, galactoside-binding, soluble, 7	0.0	1.259188	CTCF.p2:0:0.261	CTCF.p2:-83:0.999
chr4	84028665	84028794	reg1008576.p1	4.364	+	NM_016129 AK001148 TSC_hg19_v1_chr4_+_83956368 AK024005 BC093007 AK223178 BC004302 BC009292 AB587420 AF100757 AK001210	-72405	+	TSC_hg19_v1_chr4_-_83934095 AK292769 NM_001115007	-94701	-	AB111889 BX640657 TSC_hg19_v1_chr4_-_83931982 BX640966 NM_001115008 NM_194282	-96735	-	BC012205 NM_001130716	2274	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	7162	-	TSC_hg19_v1_chr4_-_84035912 AK000140 NM_001130715 NM_016619	7198	-	NM_016129|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001148|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK024005|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC093007|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK223178|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC004302|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC009292|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AF100757|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001210|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK292769|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115007|LIN54|132660|lin-54 homolog (C. elegans)##AB111889|LIN54|132660|lin-54 homolog (C. elegans)##BX640657|LIN54|132660|lin-54 homolog (C. elegans)##BX640966|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115008|LIN54|132660|lin-54 homolog (C. elegans)##NM_194282|LIN54|132660|lin-54 homolog (C. elegans)##BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8##AK000140|PLAC8|51316|placenta-specific 8##NM_001130715|PLAC8|51316|placenta-specific 8##NM_016619|PLAC8|51316|placenta-specific 8	1.994154	0.0	denovo_WM_7:52:0.212	denovo_WM_7:74:0.217
chr5	124068292	124068394	reg1005121.p2	4.364	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1220461	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1309199	-	NM_001136239 AK297992 AF272898 AF272899	-1643499	+	BC131507 AB033107 BC151226 NM_020747	12445	-	NM_001146319 AK316288 AK300154	1627471	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1690500	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.99876	0.0	
chr12	68875331	68875458	reg1009197.p1	4.363	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-149288	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-228090	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-255842	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	129252	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	129301	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	129314	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.0	0.0	
chr13	32993490	32993590	reg1014127.p1	4.363	+	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	-103923	+	BC146956 BC146965 NM_001136571	-107451	-	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	-388099	+	CU692492 TSC_hg19_v1_chr13_-_33002268 BC022188 AL049785 AL049786 AL049787 U50527 BC011650 BC068049 NM_001079691 NM_052818	8818	-	Z36834 TSC_hg19_v1_chr13_-_33112933 BC010643 U50532 AL049783 AK298546 AK312924 NM_014887 NM_033111	119385	-	TSC_hg19_v1_chr13_+_33160588 NM_015032	167023	+	NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)##BC022188|N4BP2L1|90634|NEDD4 binding protein 2-like 1##AL049785|N4BP2L1|90634|NEDD4 binding protein 2-like 1##AL049786|N4BP2L1|90634|NEDD4 binding protein 2-like 1##AL049787|N4BP2L1|90634|NEDD4 binding protein 2-like 1##U50527|N4BP2L1|90634|NEDD4 binding protein 2-like 1##BC068049|N4BP2L1|90634|NEDD4 binding protein 2-like 1##NM_001079691|N4BP2L1|90634|NEDD4 binding protein 2-like 1##NM_052818|N4BP2L1|90634|NEDD4 binding protein 2-like 1##Z36834|N4BP2L2|10443|NEDD4 binding protein 2-like 2##BC010643|N4BP2L2|10443|NEDD4 binding protein 2-like 2##U50532|N4BP2L2|10443|NEDD4 binding protein 2-like 2##AL049783|N4BP2L2|10443|NEDD4 binding protein 2-like 2##AK298546|N4BP2L2|10443|NEDD4 binding protein 2-like 2##AK312924|N4BP2L2|10443|NEDD4 binding protein 2-like 2##NM_014887|N4BP2L2|10443|NEDD4 binding protein 2-like 2##NM_033111|N4BP2L2|10443|NEDD4 binding protein 2-like 2##NM_015032|PDS5B|23047|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	1.989457	0.0	denovo_WM_7:17:0.283	denovo_WM_7:18:0.236	denovo_WM_7:36:0.237	denovo_WM_7:37:0.284
chr1	37349839	37349917	reg1011019.p1	4.363	+	NM_000760 NM_156039 NM_172313	-400964	-	BC040954 TSC_hg19_v1_chr1_-_36948515 AK307242 X55720 X55721 M59818 M59819 M59820 BC053585	-401394	-	TSC_hg19_v1_chr1_-_36929984 AB049946 AB209905 AK021626 BC031336 AF265439 AK315441 AK302633 NM_031280	-419919	-	AJ299451 U16127 AJ249210 TSC_hg19_v1_chr1_-_37499794 NM_000831	149897	-	TSC_hg19_v1_chr1_+_37940118 NM_025079	590219	+	TSC_hg19_v1_chr1_+_37940140 AK026884	590272	+	NM_000760|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_156039|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##NM_172313|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##BC040954|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##AK307242|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55720|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##X55721|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59818|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59819|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##M59820|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##BC053585|CSF3R|1441|colony stimulating factor 3 receptor (granulocyte)##AB049946|MRPS15|64960|mitochondrial ribosomal protein S15##AB209905|MRPS15|64960|mitochondrial ribosomal protein S15##AK021626|MRPS15|64960|mitochondrial ribosomal protein S15##BC031336|MRPS15|64960|mitochondrial ribosomal protein S15##AF265439|MRPS15|64960|mitochondrial ribosomal protein S15##AK315441|MRPS15|64960|mitochondrial ribosomal protein S15##AK302633|MRPS15|64960|mitochondrial ribosomal protein S15##NM_031280|MRPS15|64960|mitochondrial ribosomal protein S15##AJ299451|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##U16127|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##AJ249210|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##NM_000831|GRIK3|2899|glutamate receptor, ionotropic, kainate 3##NM_025079|ZC3H12A|80149|zinc finger CCCH-type containing 12A##AK026884|ZC3H12A|80149|zinc finger CCCH-type containing 12A	0.0	0.0	
chr16	79303371	79303494	reg1011010.p1	4.363	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-1169977	+	NM_001244755	-1240447	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-1246982	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	331183	-	AF125108 NM_130897 BC054892 BC035232	1271456	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	1534615	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	0.0	0.0	
chr18	60985447	60985576	reg1014580.p1	4.363	+	TSC_hg19_v1_chr18_-_60795898 AF401211	-189576	-	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-601203	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-601585	+	BC027258 NM_000633 NM_000657	1049	-	TSC_hg19_v1_chr18_-_60986977 X06487	1482	-	TSC_hg19_v1_chr18_-_60987309 M13994	1775	-	AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2##M13994|BCL2|596|B-cell CLL/lymphoma 2	0.0	0.0	
chr19	5331095	5331230	reg1010612.p2	4.363	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-298263	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-361989	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-362038	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	9632	-	AK098722 NM_181710 AK292251 BC017592	124264	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	291596	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	0.99561	0.0	
chr20	49604419	49604599	reg1013408.p1	4.363	+	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	-29141	+	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	-29446	-	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	-56786	-	BC006367 TSC_hg19_v1_chr20_-_49639664 BC046629 AK290689 NM_002237	35148	-	EU887573 EU887578 AB590566 TSC_hg19_v1_chr20_-_50159239 BC136418 BC144074	554630	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	554766	-	BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##BC006367|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC046629|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##AK290689|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##NM_002237|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##EU887573|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887578|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC136418|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC144074|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	0.0	0.821513	CTCF.p2:-69:0.822
chr21	37627695	37627809	reg1008811.p2	4.363	+	AJ237839 NM_005128	-90914	+	TSC_hg19_v1_chr21_-_37528616 AB004851 BC037580 BC047014	-99121	-	AB041012 NM_001236 AB124847 TSC_hg19_v1_chr21_+_37507383 AK223429 BC002812 AB004854 CR541709	-120403	+	TSC_hg19_v1_chr21_+_37692548 BC058002 NM_015358 AK295133 BC007311 D50926 BC094779 BC132731 BC144116 AK292957 AB489143	64767	+	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	129938	+	BC012126 NM_012130 AY355349	210979	-	AJ237839|DOPEY2|9980|dopey family member 2##NM_005128|DOPEY2|9980|dopey family member 2##AB004851|LOC100506428|100506428|uncharacterized LOC100506428##BC037580|LOC100506428|100506428|uncharacterized LOC100506428##BC047014|LOC100506428|100506428|uncharacterized LOC100506428##AB041012|CBR3|874|carbonyl reductase 3##NM_001236|CBR3|874|carbonyl reductase 3##AB124847|CBR3|874|carbonyl reductase 3##AK223429|CBR3|874|carbonyl reductase 3##BC002812|CBR3|874|carbonyl reductase 3##AB004854|CBR3|874|carbonyl reductase 3##CR541709|CBR3|874|carbonyl reductase 3##BC058002|MORC3|23515|MORC family CW-type zinc finger 3##NM_015358|MORC3|23515|MORC family CW-type zinc finger 3##AK295133|MORC3|23515|MORC family CW-type zinc finger 3##BC007311|MORC3|23515|MORC family CW-type zinc finger 3##D50926|MORC3|23515|MORC family CW-type zinc finger 3##BC094779|MORC3|23515|MORC family CW-type zinc finger 3##BC132731|MORC3|23515|MORC family CW-type zinc finger 3##BC144116|MORC3|23515|MORC family CW-type zinc finger 3##AK292957|MORC3|23515|MORC family CW-type zinc finger 3##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14	0.929144	0.0	denovo_WM_7:4:0.624	denovo_WM_7:5:0.305
chr3	108167530	108167675	reg1010852.p1	4.363	+	BC035971 NM_007072	-146271	+	AK315109 AK296644 TSC_hg19_v1_chr3_+_108015400 AK000692	-152201	+	AB014762 AB528382 CR457251 CU680102 DQ893050 DQ896298 TSC_hg19_v1_chr3_-_107941272 AK298854 AF139576 AK001009 BC011899 NM_018010	-226310	-	AB023217 NM_014981	80566	-	AB463087 AM393250 HQ258525 BC082961 TSC_hg19_v1_chr3_-_108308269 BC130564 BC136371 BC063433 AL713689 AF334474 AK056933 AK308315	140658	-	NM_014648 TSC_hg19_v1_chr3_+_108308395	140763	+	BC035971|HHLA2|11148|HERV-H LTR-associating 2##NM_007072|HHLA2|11148|HERV-H LTR-associating 2##AK315109|HHLA2|11148|HERV-H LTR-associating 2##AK296644|HHLA2|11148|HERV-H LTR-associating 2##AK000692|HHLA2|11148|HERV-H LTR-associating 2##AB014762|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##CR457251|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ893050|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##DQ896298|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK298854|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AF139576|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AK001009|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##BC011899|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##NM_018010|IFT57|55081|intraflagellar transport 57 homolog (Chlamydomonas)##AB023217|MYH15|22989|myosin, heavy chain 15##NM_014981|MYH15|22989|myosin, heavy chain 15##AM393250|KIAA1524|57650|KIAA1524##BC082961|KIAA1524|57650|KIAA1524##BC130564|KIAA1524|57650|KIAA1524##BC136371|KIAA1524|57650|KIAA1524##BC063433|KIAA1524|57650|KIAA1524##AL713689|KIAA1524|57650|KIAA1524##AF334474|KIAA1524|57650|KIAA1524##AK056933|KIAA1524|57650|KIAA1524##AK308315|KIAA1524|57650|KIAA1524##NM_014648|DZIP3|9666|DAZ interacting protein 3, zinc finger	0.0	0.0	
chrX	131360321	131360406	reg1013044.p1	4.363	+	BC035382 TSC_hg19_v1_chrX_-_131353476 AK310997	-6862	-	TSC_hg19_v1_chrX_+_131352259 AK095439	-7936	+	TSC_hg19_v1_chrX_-_131352063 BC051467 AY298955 NM_021183	-8303	-	AY372211 AK002178 NM_001170701 NM_001170702 AK300248 NM_001170703	187222	-	AF491305 EU446986 BC074775 BC074776 AB077698 AB077699 AF467070 AJ427918 AJ427919 AY072692 NM_018388 NM_133486	213314	-	BC042090 NM_001170704 TSC_hg19_v1_chrX_-_131624064	263670	-	BC035382|RAP2C|57826|RAP2C, member of RAS oncogene family##AK310997|RAP2C|57826|RAP2C, member of RAS oncogene family##BC051467|RAP2C|57826|RAP2C, member of RAS oncogene family##AY298955|RAP2C|57826|RAP2C, member of RAS oncogene family##NM_021183|RAP2C|57826|RAP2C, member of RAS oncogene family##AY372211|MBNL3|55796|muscleblind-like 3 (Drosophila)##AK002178|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170701|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170702|MBNL3|55796|muscleblind-like 3 (Drosophila)##AK300248|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170703|MBNL3|55796|muscleblind-like 3 (Drosophila)##AF491305|MBNL3|55796|muscleblind-like 3 (Drosophila)##EU446986|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC074775|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC074776|MBNL3|55796|muscleblind-like 3 (Drosophila)##AB077698|MBNL3|55796|muscleblind-like 3 (Drosophila)##AB077699|MBNL3|55796|muscleblind-like 3 (Drosophila)##AF467070|MBNL3|55796|muscleblind-like 3 (Drosophila)##AJ427918|MBNL3|55796|muscleblind-like 3 (Drosophila)##AJ427919|MBNL3|55796|muscleblind-like 3 (Drosophila)##AY072692|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_018388|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_133486|MBNL3|55796|muscleblind-like 3 (Drosophila)##BC042090|MBNL3|55796|muscleblind-like 3 (Drosophila)##NM_001170704|MBNL3|55796|muscleblind-like 3 (Drosophila)	1.315762	0.06319	denovo_WM_7:55:0.571
chr12	121597298	121597372	reg1012559.p1	4.362	+	NM_002562 TSC_hg19_v1_chr12_+_121570744 AK294126 AK290405 AK296432 BC011913 BC121157 BC121158 AB209709 BC007679 AK090866 AK225163 AX746656 Y09561 GQ180122 DQ893457 DQ896337 AB590390 CU680114 AY847298 AY847299 AY847300 AY847301 AY847302 AY847303 AY847304 DQ399293	-26634	+	TSC_hg19_v1_chr12_-_121476781 HQ258301 AJ225089 AK314419 NM_003733 NM_198213 AK023956 BC117408 BC117410	-120552	-	TSC_hg19_v1_chr12_-_121454291 AK222630 AK299170 AK301566 AK022510 AK225162 NM_022895 AK307971	-143041	-	U83993 NM_002560	50326	+	TSC_hg19_v1_chr12_+_121647931 AK293599 AK293660 AK297704 AK308549 AK308868 BC017458	50557	+	TSC_hg19_v1_chr12_+_121647948 BC035845 Y07684 BC033826 AB464108 DQ890906 DQ894059 CU689766 AK225604 BT019738 BT019739 AK301080 AF000234	50667	+	NM_002562|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK294126|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK290405|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK296432|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC011913|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121157|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC121158|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AB209709|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##BC007679|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK090866|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AK225163|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##Y09561|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##GQ180122|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ893457|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ896337|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847298|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847299|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847300|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847301|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847302|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847303|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##AY847304|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##DQ399293|P2RX7|5027|purinergic receptor P2X, ligand-gated ion channel, 7##HQ258301|OASL|8638|2'-5'-oligoadenylate synthetase-like##AJ225089|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK314419|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_003733|OASL|8638|2'-5'-oligoadenylate synthetase-like##NM_198213|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK023956|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117408|OASL|8638|2'-5'-oligoadenylate synthetase-like##BC117410|OASL|8638|2'-5'-oligoadenylate synthetase-like##AK222630|C12orf43|64897|chromosome 12 open reading frame 43##AK299170|C12orf43|64897|chromosome 12 open reading frame 43##AK301566|C12orf43|64897|chromosome 12 open reading frame 43##AK022510|C12orf43|64897|chromosome 12 open reading frame 43##AK225162|C12orf43|64897|chromosome 12 open reading frame 43##NM_022895|C12orf43|64897|chromosome 12 open reading frame 43##AK307971|C12orf43|64897|chromosome 12 open reading frame 43##U83993|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##NM_002560|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293599|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK293660|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK297704|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308549|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK308868|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC017458|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC035845|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##Y07684|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BC033826|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ890906|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##DQ894059|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK225604|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019738|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##BT019739|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AK301080|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4##AF000234|P2RX4|5025|purinergic receptor P2X, ligand-gated ion channel, 4	0.0	0.0	
chr13	31038226	31038406	reg1011631.p1	4.362	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-156747	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-157165	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-613475	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	1677	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	1742	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	153311	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	0.75509	0.0	denovo_WM_7:-26:0.510
chr19	1279822	1279941	reg1016073.p1	4.362	+	TSC_hg19_v1_chr19_+_1275540 NM_017914 BC000890 BC012080	-4314	+	CU674448 AB528491 EU176219 EU176522 AB451225 AB451348 BT007210 TSC_hg19_v1_chr19_+_1270968	-8932	+	TSC_hg19_v1_chr19_+_1269330 NM_001280 AK095781 AK304185 AK304470 AK311601 AK128423 AF021336 AK094781 D78134 BC000901 BC000403	-10576	+	TSC_hg19_v1_chr19_+_1286081 AJ007292 NM_001405 AB463609	6084	+	TSC_hg19_v1_chr19_+_1354979 NM_032853 AK310721 U20897	75120	+	TSC_hg19_v1_chr19_+_1383882 AK092169 AX747389 NM_024407 AK128713	104005	+	NM_017914|C19orf24|55009|chromosome 19 open reading frame 24##BC000890|C19orf24|55009|chromosome 19 open reading frame 24##BC012080|C19orf24|55009|chromosome 19 open reading frame 24##EU176219|CIRBP|1153|cold inducible RNA binding protein##EU176522|CIRBP|1153|cold inducible RNA binding protein##AB451225|CIRBP|1153|cold inducible RNA binding protein##AB451348|CIRBP|1153|cold inducible RNA binding protein##BT007210|CIRBP|1153|cold inducible RNA binding protein##NM_001280|CIRBP|1153|cold inducible RNA binding protein##AK095781|CIRBP|1153|cold inducible RNA binding protein##AK304185|CIRBP|1153|cold inducible RNA binding protein##AK304470|CIRBP|1153|cold inducible RNA binding protein##AK311601|CIRBP|1153|cold inducible RNA binding protein##AK128423|CIRBP|1153|cold inducible RNA binding protein##AF021336|CIRBP|1153|cold inducible RNA binding protein##AK094781|CIRBP|1153|cold inducible RNA binding protein##D78134|CIRBP|1153|cold inducible RNA binding protein##BC000901|CIRBP|1153|cold inducible RNA binding protein##BC000403|CIRBP|1153|cold inducible RNA binding protein##AJ007292|EFNA2|1943|ephrin-A2##NM_001405|EFNA2|1943|ephrin-A2##NM_032853|MUM1|84939|melanoma associated antigen (mutated) 1##AK310721|MUM1|84939|melanoma associated antigen (mutated) 1##U20897|MUM1|84939|melanoma associated antigen (mutated) 1##AK092169|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##NM_024407|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)##AK128713|NDUFS7|374291|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)	0.0	0.996962	CTCF.p2:3:0.997
chr19	43017165	43017328	reg1014725.p2	4.362	+	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	-70122	-	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	-85708	-	TSC_hg19_v1_chr19_-_42928157 BC029301	-89033	-	X16356 TSC_hg19_v1_chr19_-_43031473	14163	-	M76742 S71326 CU677011 AY766113 TSC_hg19_v1_chr19_-_43032631 D90311 X14831 X16354 D90313 J03858 BC024164 BC014473 D12502 D90312 M69176 M72238 AL833584 AK314211 NM_001024912 NM_001184813 NM_001184815 NM_001184816 NM_001205344 NM_001712	15346	-	CU693190 DQ891971 DQ895161 X52378 AK297012 BC026263 D90064 M33326 AK312652 NM_001816	81784	-	BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive##BC029301|LIPE|3991|lipase, hormone-sensitive##X16356|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M76742|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##S71326|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AY766113|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90311|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X14831|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##X16354|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90313|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##J03858|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC024164|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##BC014473|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D12502|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##D90312|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M69176|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##M72238|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AL833584|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##AK314211|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001024912|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184813|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184815|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001184816|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001205344|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##NM_001712|CEACAM1|634|carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)##DQ891971|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##DQ895161|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##X52378|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK297012|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##BC026263|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##D90064|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##M33326|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##AK312652|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8##NM_001816|CEACAM8|1088|carcinoembryonic antigen-related cell adhesion molecule 8	0.0	0.0	
chr2	101705939	101706119	reg1010577.p2	4.362	+	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-87307	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-269263	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	-526593	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	61754	-	TSC_hg19_v1_chr2_+_101869347 NM_017546	163308	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	163363	+	NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29	0.0	0.0	
chr1	143961828	143962008	reg1015212.p2	4.361	+	AK307197 TSC_hg19_v1_chr1_-_143913122 AB096683 NM_207418	-48788	-	HQ258079 BC130376 BC130378 NM_001123068	-194054	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	-217513	-	BC130376 BC130378 AB084917 NM_001135789 NM_001143883 NM_178230	402306	-	BC061517 BC073170 BC009950 BC094809 TSC_hg19_v1_chr1_-_144520932	559013	-	TSC_hg19_v1_chr1_-_144520998 BC063535 BC021732	559088	-	AK307197|FAM72D|728833|family with sequence similarity 72, member D##AB096683|FAM72D|728833|family with sequence similarity 72, member D##NM_207418|FAM72D|728833|family with sequence similarity 72, member D##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##AB084917|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##NM_001135789|PPIAL4C|653598|peptidylprolyl isomerase A (cyclophilin A)-like 4C##NM_001143883|PPIAL4B|653505|peptidylprolyl isomerase A (cyclophilin A)-like 4B##NM_178230|PPIAL4A|164022|peptidylprolyl isomerase A (cyclophilin A)-like 4A##BC061517|LOC728855|728855|uncharacterized LOC728855##BC073170|LOC728855|728855|uncharacterized LOC728855##BC009950|LOC728855|728855|uncharacterized LOC728855##BC094809|LOC728855|728855|uncharacterized LOC728855##BC063535|LOC728855|728855|uncharacterized LOC728855##BC021732|LOC728855|728855|uncharacterized LOC728855	1.993041	0.0	denovo_WM_7:8:0.538	denovo_WM_7:9:0.269	denovo_WM_7:23:0.329	denovo_WM_7:24:0.598
chr11	62446566	62446747	reg1011844.p1	4.361	+	AK054832 AK300542 AK303471 TSC_hg19_v1_chr11_-_62446546 BC040129 AK297856	-96	-	CU674676 GQ129328 TSC_hg19_v1_chr11_-_62446540 M68864 BC001372 NM_015853 BC000902 BC032689 AK316012	-189	-	TSC_hg19_v1_chr11_-_62439241 AK055736 BC001434 NM_024099	-7420	-	AK291334 TSC_hg19_v1_chr11_-_62457003 AY358354 BC053902 AL834319	10444	-	NM_203422	10714	-	TSC_hg19_v1_chr11_-_62472904 CU678804 CU680238 CU692014	26286	-	AK054832|UBXN1|51035|UBX domain protein 1##AK300542|UBXN1|51035|UBX domain protein 1##AK303471|UBXN1|51035|UBX domain protein 1##BC040129|UBXN1|51035|UBX domain protein 1##AK297856|UBXN1|51035|UBX domain protein 1##GQ129328|UBXN1|51035|UBX domain protein 1##M68864|UBXN1|51035|UBX domain protein 1##BC001372|UBXN1|51035|UBX domain protein 1##NM_015853|UBXN1|51035|UBX domain protein 1##BC000902|UBXN1|51035|UBX domain protein 1##BC032689|UBXN1|51035|UBX domain protein 1##AK316012|UBXN1|51035|UBX domain protein 1##AK055736|C11orf48|79081|chromosome 11 open reading frame 48##BC001434|C11orf48|79081|chromosome 11 open reading frame 48##NM_024099|C11orf48|79081|chromosome 11 open reading frame 48##AK291334|LRRN4CL|221091|LRRN4 C-terminal like##AY358354|LRRN4CL|221091|LRRN4 C-terminal like##BC053902|LRRN4CL|221091|LRRN4 C-terminal like##AL834319|LRRN4CL|221091|LRRN4 C-terminal like##NM_203422|LRRN4CL|221091|LRRN4 C-terminal like	0.0	0.0	
chr12	110805176	110805259	reg1013751.p2	4.361	+	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	-85849	+	TSC_hg19_v1_chr12_+_110719041 NM_001681 NM_170665	-86182	+	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	-242996	+	TSC_hg19_v1_chr12_-_110841470 BC098264 BC098295 BC098362 BC099732 BC111798 AF191340 BC148236 BC040130	36222	-	TSC_hg19_v1_chr12_-_110841526 BC141848 AK021809 NM_001137664 NM_016238	36294	-	TSC_hg19_v1_chr12_-_110888079 AF006086	82868	-	M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001681|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_170665|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC098264|ANAPC7|51434|anaphase promoting complex subunit 7##BC098295|ANAPC7|51434|anaphase promoting complex subunit 7##BC098362|ANAPC7|51434|anaphase promoting complex subunit 7##BC099732|ANAPC7|51434|anaphase promoting complex subunit 7##BC111798|ANAPC7|51434|anaphase promoting complex subunit 7##AF191340|ANAPC7|51434|anaphase promoting complex subunit 7##BC148236|ANAPC7|51434|anaphase promoting complex subunit 7##BC040130|ANAPC7|51434|anaphase promoting complex subunit 7##BC141848|ANAPC7|51434|anaphase promoting complex subunit 7##AK021809|ANAPC7|51434|anaphase promoting complex subunit 7##NM_001137664|ANAPC7|51434|anaphase promoting complex subunit 7##NM_016238|ANAPC7|51434|anaphase promoting complex subunit 7##AF006086|ARPC3|10094|actin related protein 2/3 complex, subunit 3, 21kDa	0.0	0.0	
chr17	27070108	27070248	reg1010737.p1	4.361	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	-14364	+	NM_001160407	-16230	-	EU831756 EU831834 TSC_hg19_v1_chr17_-_27053250 BC014072 NM_138463	-16990	-	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	891	+	TSC_hg19_v1_chr17_-_27139467 AK095569	69269	-	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	99612	-	BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_001160407|TLCD1|116238|TLC domain containing 1##EU831756|TLCD1|116238|TLC domain containing 1##EU831834|TLCD1|116238|TLC domain containing 1##BC014072|TLCD1|116238|TLC domain containing 1##NM_138463|TLCD1|116238|TLC domain containing 1##NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##AK095569|C17orf63|55731|chromosome 17 open reading frame 63##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63	1.990339	0.0	denovo_WM_7:-63:0.270	denovo_WM_7:-64:0.726	denovo_WM_7:-79:0.859
chr19	10376097	10376216	reg1009610.p1	4.361	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	-13164	+	TSC_hg19_v1_chr19_+_10362889 BC009858	-13258	+	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	-13509	+	NM_000201	5360	+	M24283 BC015969 AK301412 J03132 TSC_hg19_v1_chr19_+_10381795 AK130659 AK312636 AK298054 AK298983 X06990 AB590404 AF340038 BT006854 AF340039	5649	+	BC029364 NM_001039132 NM_001544 NM_022377 BC000046 L27670 L27671 S78852 DQ892650 DQ895889 BT009816	21509	+	AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##NM_000201|ICAM1|3383|intercellular adhesion molecule 1##M24283|ICAM1|3383|intercellular adhesion molecule 1##BC015969|ICAM1|3383|intercellular adhesion molecule 1##AK301412|ICAM1|3383|intercellular adhesion molecule 1##J03132|ICAM1|3383|intercellular adhesion molecule 1##AK130659|ICAM1|3383|intercellular adhesion molecule 1##AK312636|ICAM1|3383|intercellular adhesion molecule 1##AK298054|ICAM1|3383|intercellular adhesion molecule 1##AK298983|ICAM1|3383|intercellular adhesion molecule 1##X06990|ICAM1|3383|intercellular adhesion molecule 1##AF340038|ICAM1|3383|intercellular adhesion molecule 1##BT006854|ICAM1|3383|intercellular adhesion molecule 1##AF340039|ICAM1|3383|intercellular adhesion molecule 1##BC029364|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_001039132|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_001544|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_022377|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##BC000046|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##L27670|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##L27671|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##S78852|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##DQ892650|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##DQ895889|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##BT009816|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	0.780786	0.010313	denovo_WM_7:60:0.781
chr19	16561026	16561206	reg1015500.p3	4.361	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-125347	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-125475	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-252366	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	21660	-	TSC_hg19_v1_chr19_-_16582810 AK291359	21736	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	45854	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.998244	0.0	denovo_WM_7:-53:0.453	denovo_WM_7:-54:0.219	denovo_WM_7:-55:0.219
chr3	113417592	113417714	reg1011608.p1	4.361	+	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	-2241	-	NM_017699	-166436	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-183660	-	AK296456 TSC_hg19_v1_chr3_-_113464788	47061	-	TSC_hg19_v1_chr3_-_113465043 CR749314 AK023090 AK307184 BC012731 AK311403 AK023256	47390	-	TSC_hg19_v1_chr3_-_113465109 NM_025146	47480	-	BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##CR749314|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023090|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK307184|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##BC012731|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023256|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##NM_025146|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.0	0.0	
chr5	66329126	66329255	reg1014161.p2	4.361	+	AY830839 BC018692 NM_015183	-204587	+	TSC_hg19_v1_chr5_+_65892187 NM_001164664 NM_198828 BC033215	-436982	+	BC067770 NM_139168	-888528	+	BC109069 BC109070 D83597 NM_005582 AK313177	163410	-	TSC_hg19_v1_chr5_+_67511583 NM_181523	1182390	+	TSC_hg19_v1_chr5_+_67511602 BC094795	1182417	+	AY830839|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC018692|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_015183|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_001164664|MAST4|375449|microtubule associated serine/threonine kinase family member 4##NM_198828|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC033215|MAST4|375449|microtubule associated serine/threonine kinase family member 4##BC067770|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##NM_139168|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	0.215505	0.0	
chr6	135483914	135484094	reg1002620.p1	4.361	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-108010	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-108116	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-212772	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	18444	+	TSC_hg19_v1_chr6_+_135502507 BC064955	18491	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	18582	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr8	103826115	103826220	reg1009048.p1	4.361	+	TSC_hg19_v1_chr8_-_103667952 AK312894 U21847 BC095399 NM_005655	-158235	-	BC011538 NM_001032282 S81439	-160075	-	NM_024410 AK315276 BC104456 BC104457	-262306	+	TSC_hg19_v1_chr8_-_103876358 AK095493 D88674 BC013420 BC019279	50192	-	TSC_hg19_v1_chr8_-_103876392 BC042404 NM_015878 NM_148174	50228	-	TSC_hg19_v1_chr8_+_104033282 NM_001695 AK298617 BX648079	207100	+	AK312894|KLF10|7071|Kruppel-like factor 10##U21847|KLF10|7071|Kruppel-like factor 10##BC095399|KLF10|7071|Kruppel-like factor 10##NM_005655|KLF10|7071|Kruppel-like factor 10##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##AK095493|AZIN1|51582|antizyme inhibitor 1##D88674|AZIN1|51582|antizyme inhibitor 1##BC013420|AZIN1|51582|antizyme inhibitor 1##BC019279|AZIN1|51582|antizyme inhibitor 1##BC042404|AZIN1|51582|antizyme inhibitor 1##NM_015878|AZIN1|51582|antizyme inhibitor 1##NM_148174|AZIN1|51582|antizyme inhibitor 1##NM_001695|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##AK298617|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1##BX648079|ATP6V1C1|528|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1	0.0	0.0	
chr9	132770264	132770386	reg1002519.p3	4.361	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-172560	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-172603	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-172641	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	35029	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	35163	-	BC039728 NM_001136557 NM_001136558 NM_020960	45659	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	1.990595	0.0	denovo_WM_7:0:0.847	denovo_WM_7:-38:0.331	denovo_WM_7:-39:0.331	denovo_WM_7:-40:0.331
chr1	224618278	224618451	reg1015776.p1	4.360	+	BC000573 TSC_hg19_v1_chr1_+_224544609 AK222634 BX649076 AM392966 AM393151 AM393502 DQ891901 DQ895087	-73753	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	-73772	+	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	-73795	+	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	3396	-	AB209887 NM_001115113 NM_025160	3636	-	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	185815	+	BC000573|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK222634|CNIH4|29097|cornichon homolog 4 (Drosophila)##BX649076|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM392966|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393151|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393502|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ891901|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ895087|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)	0.075053	0.0	
chr16	78768679	78768816	reg1007740.p2	4.360	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-635292	+	NM_001244755	-705762	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-712297	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	865868	-	AF125108 NM_130897 BC054892 BC035232	1806141	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	2069300	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	2.103724	0.0	
chr19	52692749	52692913	reg1010070.p2	4.360	+	BC011784 NM_001102657	-17936	-	BC033199 AK092266 AX747442 NM_178523	-49652	-	TSC_hg19_v1_chr19_-_52598972 AK131409 NM_001136499	-93832	-	NM_014225 TSC_hg19_v1_chr19_+_52693204	309	+	TSC_hg19_v1_chr19_+_52693232 AK315700	406	+	TSC_hg19_v1_chr19_+_52693304 AK290593 AK291932 AK091387 AK130000 AK293174 AX746952 BC026733 AK299012 AK303934 AK307743 BC001537	455	+	BC011784|ZNF836|162962|zinc finger protein 836##NM_001102657|ZNF836|162962|zinc finger protein 836##BC033199|ZNF616|90317|zinc finger protein 616##AK092266|ZNF616|90317|zinc finger protein 616##NM_178523|ZNF616|90317|zinc finger protein 616##AK131409|ZNF841|284371|zinc finger protein 841##NM_001136499|ZNF841|284371|zinc finger protein 841##NM_014225|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK315700|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK290593|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK291932|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK091387|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK130000|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK293174|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##BC026733|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK299012|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK303934|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##AK307743|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha##BC001537|PPP2R1A|5518|protein phosphatase 2, regulatory subunit A, alpha	0.923661	0.0	denovo_WM_7:-96:0.490	denovo_WM_7:-98:0.270
chr2	232086480	232086656	reg1008392.p1	4.360	+	TSC_hg19_v1_chr2_+_232063410 AY929062	-23174	+	AY219922 TSC_hg19_v1_chr2_+_232063378	-23190	+	TSC_hg19_v1_chr2_+_232063340 NM_025139 BX537956 AK309395	-23213	+	TSC_hg19_v1_chr2_+_232120778 AB055779	34210	+	AF502430 NM_145236 TSC_hg19_v1_chr2_+_232260454 AK126207 AB528076	173854	+	AK001314 TSC_hg19_v1_chr2_-_232326464	239861	-	AY929062|ARMC9|80210|armadillo repeat containing 9##AY219922|ARMC9|80210|armadillo repeat containing 9##NM_025139|ARMC9|80210|armadillo repeat containing 9##BX537956|ARMC9|80210|armadillo repeat containing 9##AK309395|ARMC9|80210|armadillo repeat containing 9##AF502430|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##NM_145236|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK126207|B3GNT7|93010|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7##AK001314|NCL|4691|nucleolin	0.99033	0.0	denovo_WM_7:-13:0.237	denovo_WM_7:-14:0.237	denovo_WM_7:-15:0.237	denovo_WM_7:-16:0.237
chr7	115864905	115864971	reg1011898.p2	4.360	+	AK310995 NM_152829 AK291802 AF245357	-1919	+	NM_015641 AK299104 TSC_hg19_v1_chr7_+_115850592 BC001451 AK021575 AK300546 AK309324 AK222840 AF245356 AJ250865 AK315644 AB529039 EU176352 EU176694	-14285	+	TSC_hg19_v1_chr7_-_115670864 CR933605 NM_001018058 NM_012252	-194086	-	TSC_hg19_v1_chr7_+_116139705 AY353255 BC005256 NM_001206747 NM_001233 NM_198212 AK310786 AK311964 AF035752 AB451285 AB451417 AB489180 AM393815 BT007051 CR407685	274789	+	NM_001206748	275159	+	NM_001753 AK290871	299902	+	AK310995|TES|26136|testis derived transcript (3 LIM domains)##NM_152829|TES|26136|testis derived transcript (3 LIM domains)##AK291802|TES|26136|testis derived transcript (3 LIM domains)##AF245357|TES|26136|testis derived transcript (3 LIM domains)##NM_015641|TES|26136|testis derived transcript (3 LIM domains)##AK299104|TES|26136|testis derived transcript (3 LIM domains)##BC001451|TES|26136|testis derived transcript (3 LIM domains)##AK021575|TES|26136|testis derived transcript (3 LIM domains)##AK300546|TES|26136|testis derived transcript (3 LIM domains)##AK309324|TES|26136|testis derived transcript (3 LIM domains)##AK222840|TES|26136|testis derived transcript (3 LIM domains)##AF245356|TES|26136|testis derived transcript (3 LIM domains)##AJ250865|TES|26136|testis derived transcript (3 LIM domains)##AK315644|TES|26136|testis derived transcript (3 LIM domains)##EU176352|TES|26136|testis derived transcript (3 LIM domains)##EU176694|TES|26136|testis derived transcript (3 LIM domains)##CR933605|TFEC|22797|transcription factor EC##NM_001018058|TFEC|22797|transcription factor EC##NM_012252|TFEC|22797|transcription factor EC##AY353255|CAV2|858|caveolin 2##BC005256|CAV2|858|caveolin 2##NM_001206747|CAV2|858|caveolin 2##NM_001233|CAV2|858|caveolin 2##NM_198212|CAV2|858|caveolin 2##AK310786|CAV2|858|caveolin 2##AK311964|CAV2|858|caveolin 2##AF035752|CAV2|858|caveolin 2##AB451285|CAV2|858|caveolin 2##AB451417|CAV2|858|caveolin 2##AM393815|CAV2|858|caveolin 2##BT007051|CAV2|858|caveolin 2##CR407685|CAV2|858|caveolin 2##NM_001206748|CAV2|858|caveolin 2##NM_001753|CAV1|857|caveolin 1, caveolae protein, 22kDa##AK290871|CAV1|857|caveolin 1, caveolae protein, 22kDa	0.027034	0.0	
chr1	8457354	8457534	reg1002734.p1	4.359	+	NM_001080397	-73055	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-371046	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-371083	-	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	26573	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	420148	-	GU170215 NM_001201483	474190	-	NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)	0.0	0.0	
chr20	825417	825505	reg1001665.p2	4.359	+	NM_031424 BC022238 AB196290 DQ431181	-96	+	BC004222 NM_207121	-8751	+	AK314165 NM_001042353 TSC_hg19_v1_chr20_+_814388	-11077	+	AB527108 AF113708 BC111976 BC111978 AF074332 NM_015985 AK304756	71455	-	AB528812 AK122609 DQ355152 NM_001029871 NM_001040007 TSC_hg19_v1_chr20_-_983029	157456	-	AK302164 NM_178578 BC126127 BC126462	268499	+	NM_031424|FAM110A|83541|family with sequence similarity 110, member A##BC022238|FAM110A|83541|family with sequence similarity 110, member A##AB196290|FAM110A|83541|family with sequence similarity 110, member A##DQ431181|FAM110A|83541|family with sequence similarity 110, member A##BC004222|FAM110A|83541|family with sequence similarity 110, member A##NM_207121|FAM110A|83541|family with sequence similarity 110, member A##AK314165|FAM110A|83541|family with sequence similarity 110, member A##NM_001042353|FAM110A|83541|family with sequence similarity 110, member A##AF113708|ANGPT4|51378|angiopoietin 4##BC111976|ANGPT4|51378|angiopoietin 4##BC111978|ANGPT4|51378|angiopoietin 4##AF074332|ANGPT4|51378|angiopoietin 4##NM_015985|ANGPT4|51378|angiopoietin 4##AK304756|ANGPT4|51378|angiopoietin 4##AK122609|RSPO4|343637|R-spondin 4##DQ355152|RSPO4|343637|R-spondin 4##NM_001029871|RSPO4|343637|R-spondin 4##NM_001040007|RSPO4|343637|R-spondin 4##AK302164|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##NM_178578|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##BC126127|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)##BC126462|PSMF1|9491|proteasome (prosome, macropain) inhibitor subunit 1 (PI31)	0.0	0.266834	CTCF.p2:86:0.267
chr4	11471768	11471899	reg1010463.p1	4.359	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-41301	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-785432	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-1012823	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2014118	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2014142	-	AB463932 AF009801 EU446467 BC111966 NM_001189	2074242	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	1.067045	0.0	denovo_WM_7:-6:0.372
chr5	149793971	149794073	reg1007245.p1	4.359	+	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	-1572	-	TSC_hg19_v1_chr5_-_149792349 M28589	-1676	-	TSC_hg19_v1_chr5_-_149792315 AB590276 BT019505 CU676294 DQ892005 DQ895194 AK292076 AK297889 AK300669 AK308929 M28588 X00497 BC018726 BC024272	-1719	-	TSC_hg19_v1_chr5_-_149829249 BC020515	35222	-	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	35269	-	TSC_hg19_v1_chr5_+_149865341 AB209107	71417	+	NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BT019505|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ892005|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ895194|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK292076|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK297889|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK300669|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK308929|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##M28588|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##X00497|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC018726|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC024272|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC020515|RPS14|6208|ribosomal protein S14##BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	1.978412	0.0	denovo_WM_7:-52:0.659	denovo_WM_7:-53:0.227	denovo_WM_7:-69:0.544	denovo_WM_7:-70:0.391
chr12	123011181	123011312	reg1014268.p1	4.358	+	TSC_hg19_v1_chr12_-_122985537 AK027702 AK074638 NM_017612	-25728	-	TSC_hg19_v1_chr12_-_122985404 BC065918	-25819	-	X64838 TSC_hg19_v1_chr12_-_122907155 M97501 NM_001247997 NM_002956 NM_198240	-104009	-	TSC_hg19_v1_chr12_-_123011521 BC008684 AK056114 BX640711 AK056256 BC067773 AB212664 AK094465 NM_023012	262	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	558	+	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	176626	-	AK027702|ZCCHC8|55596|zinc finger, CCHC domain containing 8##AK074638|ZCCHC8|55596|zinc finger, CCHC domain containing 8##NM_017612|ZCCHC8|55596|zinc finger, CCHC domain containing 8##BC065918|ZCCHC8|55596|zinc finger, CCHC domain containing 8##X64838|CLIP1|6249|CAP-GLY domain containing linker protein 1##M97501|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_001247997|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_002956|CLIP1|6249|CAP-GLY domain containing linker protein 1##NM_198240|CLIP1|6249|CAP-GLY domain containing linker protein 1##BC008684|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056114|RSRC2|65117|arginine/serine-rich coiled-coil 2##BX640711|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK056256|RSRC2|65117|arginine/serine-rich coiled-coil 2##BC067773|RSRC2|65117|arginine/serine-rich coiled-coil 2##AB212664|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK094465|RSRC2|65117|arginine/serine-rich coiled-coil 2##NM_023012|RSRC2|65117|arginine/serine-rich coiled-coil 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2	0.0	0.0	
chr12	56690256	56690366	reg1007973.p2	4.358	+	BC000105 TSC_hg19_v1_chr12_-_56679730 AF147410 AK293263	-10510	-	TSC_hg19_v1_chr12_+_56661038 BC026922 NM_001099337	-29260	+	BC047444 TSC_hg19_v1_chr12_+_56660935 AY358861	-29378	+	AF047042 CU679623 BC072016 TSC_hg19_v1_chr12_-_56694071 AK074956 AK296249	3720	-	TSC_hg19_v1_chr12_-_56694090 AK095856 BC010106	3785	-	TSC_hg19_v1_chr12_-_56694115 AK307625	3807	-	BC000105|CS|1431|citrate synthase##AF147410|CS|1431|citrate synthase##AK293263|CS|1431|citrate synthase##BC026922|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##NM_001099337|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##BC047444|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##AY358861|COQ10A|93058|coenzyme Q10 homolog A (S. cerevisiae)##AF047042|CS|1431|citrate synthase##BC072016|CS|1431|citrate synthase##AK074956|CS|1431|citrate synthase##AK296249|CS|1431|citrate synthase##AK095856|CS|1431|citrate synthase##BC010106|CS|1431|citrate synthase##AK307625|CS|1431|citrate synthase	0.0	0.0	
chr18	72885186	72885309	reg1009015.p1	4.358	+	NM_001146189 NM_001146190 NM_017757	-542329	+	TSC_hg19_v1_chr18_+_72265126 AK056288	-620116	+	TSC_hg19_v1_chr18_-_72265072 BC036588	-620187	-	TSC_hg19_v1_chr18_-_72920993 CU687330 CU689738	35754	-	TSC_hg19_v1_chr18_-_72921059 AK292880 BC078661 BC033780	35865	-	BC018081 NM_175907 TSC_hg19_v1_chr18_-_72921324	36058	-	NM_001146189|ZNF407|55628|zinc finger protein 407##NM_001146190|ZNF407|55628|zinc finger protein 407##NM_017757|ZNF407|55628|zinc finger protein 407##AK056288|ZNF407|55628|zinc finger protein 407##BC036588|LOC400657|400657|uncharacterized LOC400657##AK292880|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC078661|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC033780|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC018081|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##NM_175907|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2	0.0	0.0	
chr2	70388951	70389049	reg1011210.p1	4.358	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-74002	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-74083	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-74173	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	29121	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	86719	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	96250	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.992509	0.037599	
chr3	23848795	23848975	reg1008832.p1	4.358	+	AK314854 TSC_hg19_v1_chr3_+_23847474	-1411	+	TSC_hg19_v1_chr3_+_23847445 NM_003341 NM_182666 BC009139	-1475	+	TSC_hg19_v1_chr3_+_23244727 AK057886 NM_152653 BC022332	-604130	+	AK295354 NM_001202476	3048	+	NM_001253379 NM_001253384 NM_002948	109409	+	TSC_hg19_v1_chr3_-_23958419 BC012145 BC066940	109555	-	AK314854|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_003341|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_182666|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##BC009139|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##AK057886|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##NM_152653|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##BC022332|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##NM_001202476|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_001253379|RPL15|6138|ribosomal protein L15##NM_001253384|RPL15|6138|ribosomal protein L15##NM_002948|RPL15|6138|ribosomal protein L15##BC012145|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##BC066940|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1	0.406596	0.0	denovo_WM_7:44:0.319
chr5	113765443	113765578	reg1011098.p1	4.358	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	-67049	+	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	-67461	+	TSC_hg19_v1_chr5_+_112849405 AK096486 NM_022828 AK310855 BC019100 BC137285	-916114	+	BC015371 NM_170775 BC040722	3739	+	TSC_hg19_v1_chr5_-_114505606 AK316422 AK296389	740094	-	AB196558 AJ272269 BC130334 AK125426 BC045164 BC046096 NM_001017397 NM_001017398 NM_018700	750477	-	BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK096486|YTHDC2|64848|YTH domain containing 2##NM_022828|YTHDC2|64848|YTH domain containing 2##AK310855|YTHDC2|64848|YTH domain containing 2##BC019100|YTHDC2|64848|YTH domain containing 2##BC137285|YTHDC2|64848|YTH domain containing 2##BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK316422|TRIM36|55521|tripartite motif containing 36##AK296389|TRIM36|55521|tripartite motif containing 36##AB196558|TRIM36|55521|tripartite motif containing 36##AJ272269|TRIM36|55521|tripartite motif containing 36##BC130334|TRIM36|55521|tripartite motif containing 36##AK125426|TRIM36|55521|tripartite motif containing 36##BC045164|TRIM36|55521|tripartite motif containing 36##BC046096|TRIM36|55521|tripartite motif containing 36##NM_001017397|TRIM36|55521|tripartite motif containing 36##NM_001017398|TRIM36|55521|tripartite motif containing 36##NM_018700|TRIM36|55521|tripartite motif containing 36	0.999908	0.0	
chr8	717333	717444	reg1013367.p2	4.358	+	AK290264 TSC_hg19_v1_chr8_-_681225 BC046243 NM_207332	-36157	-	TSC_hg19_v1_chr8_-_681204 AK297476	-36177	-	TSC_hg19_v1_chr8_-_681182 EU832095 EU832187 AF161437	-36208	-	AF119818 AF119817 NM_004745	732161	+	NM_018941 TSC_hg19_v1_chr8_+_1711937 AK312486 AF123757 AF123758 AF123759 AF123760 AF123761	994522	+	TSC_hg19_v1_chr8_+_1712012 BC007725	994648	+	AK290264|ERICH1|157697|glutamate-rich 1##BC046243|ERICH1|157697|glutamate-rich 1##NM_207332|ERICH1|157697|glutamate-rich 1##AK297476|ERICH1|157697|glutamate-rich 1##EU832095|ERICH1|157697|glutamate-rich 1##EU832187|ERICH1|157697|glutamate-rich 1##AF161437|ERICH1|157697|glutamate-rich 1##AF119818|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##AF119817|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_004745|DLGAP2|9228|discs, large (Drosophila) homolog-associated protein 2##NM_018941|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AK312486|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123757|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123758|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123759|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123760|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##AF123761|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)##BC007725|CLN8|2055|ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation)	0.994345	0.0	
chr22	50978271	50978404	reg1011486.p1	4.357	+	NM_001014440	-7330	-	BC127934 BC127935 TSC_hg19_v1_chr22_-_50970579	-7772	-	TSC_hg19_v1_chr22_-_50968479 NM_001113755 NM_001953	-9841	-	BC009980 NM_138433	8124	+	NM_001123225	22990	-	BC143071 BC150318 D87812 U62733 BC142954 NM_001145137	38087	-	NM_001014440|ODF3B|440836|outer dense fiber of sperm tails 3B##BC127934|ODF3B|440836|outer dense fiber of sperm tails 3B##BC127935|ODF3B|440836|outer dense fiber of sperm tails 3B##NM_001113755|TYMP|1890|thymidine phosphorylase##NM_001953|TYMP|1890|thymidine phosphorylase##BC009980|KLHDC7B|113730|kelch domain containing 7B##NM_138433|KLHDC7B|113730|kelch domain containing 7B##NM_001123225|SYCE3|644186|synaptonemal complex central element protein 3##BC143071|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##BC150318|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##D87812|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##U62733|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##BC142954|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)##NM_001145137|CPT1B|1375|carnitine palmitoyltransferase 1B (muscle)	0.0	0.0	
chr5	158122847	158122980	reg1013271.p1	4.357	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-836823	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-938533	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-952173	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	403544	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	403829	-	AK304228 NM_001199382	511735	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.998665	0.0	denovo_WM_7:90:0.494	denovo_WM_7:91:0.494
chr5	32421356	32421490	reg1010952.p1	4.357	+	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-18070	-	TSC_hg19_v1_chr5_-_32388710 AK025481	-32699	-	TSC_hg19_v1_chr5_-_32388605 AK295297	-32803	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	23355	-	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	23513	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	164233	+	BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##AK025481|ZFR|51663|zinc finger RNA binding protein##AK295297|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)	0.983731	0.0	denovo_WM_7:0:0.921
chr7	101625418	101625598	reg1014097.p1	4.357	+	M74099 NM_181552	-164627	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-166299	+	BC002778 NM_138403	-352933	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	302889	+	TSC_hg19_v1_chr7_+_101928431 AB000520	302935	+	NM_001146210	371380	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.0	0.0	
chr7	23053480	23053635	reg1009137.p1	4.357	+	CR456960 BC071973 NM_019059 TSC_hg19_v1_chr7_-_22862463 BC001732 AJ011007 AF086336 AF150733	-191114	-	TSC_hg19_v1_chr7_+_22767104 X04403	-286439	+	AK298077 AK301141 NM_000600 X04430 AK298013 M14584 M18403 BC015511 M54894 M29150 X04602 S56892 AB528399 BT019748 BT019749 CR450296 DQ891463 DQ894639	-286734	+	AB030241 AK056319 AK297399 TSC_hg19_v1_chr7_-_23053708 AL833296	138	-	TSC_hg19_v1_chr7_-_23053750 BC018710 NM_032581	193	-	TSC_hg19_v1_chr7_+_23145396 NM_001031710 NM_001172428 AK297421 AK056390	91815	+	CR456960|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC071973|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##NM_019059|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##BC001732|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AJ011007|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF086336|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##AF150733|TOMM7|54543|translocase of outer mitochondrial membrane 7 homolog (yeast)##X04403|IL6|3569|interleukin 6 (interferon, beta 2)##AK298077|IL6|3569|interleukin 6 (interferon, beta 2)##AK301141|IL6|3569|interleukin 6 (interferon, beta 2)##NM_000600|IL6|3569|interleukin 6 (interferon, beta 2)##X04430|IL6|3569|interleukin 6 (interferon, beta 2)##AK298013|IL6|3569|interleukin 6 (interferon, beta 2)##M14584|IL6|3569|interleukin 6 (interferon, beta 2)##M18403|IL6|3569|interleukin 6 (interferon, beta 2)##BC015511|IL6|3569|interleukin 6 (interferon, beta 2)##M54894|IL6|3569|interleukin 6 (interferon, beta 2)##M29150|IL6|3569|interleukin 6 (interferon, beta 2)##X04602|IL6|3569|interleukin 6 (interferon, beta 2)##S56892|IL6|3569|interleukin 6 (interferon, beta 2)##BT019748|IL6|3569|interleukin 6 (interferon, beta 2)##BT019749|IL6|3569|interleukin 6 (interferon, beta 2)##CR450296|IL6|3569|interleukin 6 (interferon, beta 2)##DQ891463|IL6|3569|interleukin 6 (interferon, beta 2)##DQ894639|IL6|3569|interleukin 6 (interferon, beta 2)##AB030241|FAM126A|84668|family with sequence similarity 126, member A##AK056319|FAM126A|84668|family with sequence similarity 126, member A##AK297399|FAM126A|84668|family with sequence similarity 126, member A##AL833296|FAM126A|84668|family with sequence similarity 126, member A##BC018710|FAM126A|84668|family with sequence similarity 126, member A##NM_032581|FAM126A|84668|family with sequence similarity 126, member A##NM_001031710|KLHL7|55975|kelch-like 7 (Drosophila)##NM_001172428|KLHL7|55975|kelch-like 7 (Drosophila)##AK297421|KLHL7|55975|kelch-like 7 (Drosophila)##AK056390|KLHL7|55975|kelch-like 7 (Drosophila)	0.0	0.324152	CTCF.p2:10:0.324
chrX	11777632	11777762	reg1011684.p1	4.357	+	NM_001193270 AK300814	-980	+	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	-1354	+	AF012272 AF022212 AF117067 NM_006125 NM_013427	-93877	-	NM_006800 AK025642	50	+	AB002314 NM_014728 AK289694	378893	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	1031800	+	NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AF012272|ARHGAP6|395|Rho GTPase activating protein 6##AF022212|ARHGAP6|395|Rho GTPase activating protein 6##AF117067|ARHGAP6|395|Rho GTPase activating protein 6##NM_006125|ARHGAP6|395|Rho GTPase activating protein 6##NM_013427|ARHGAP6|395|Rho GTPase activating protein 6##NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AB002314|FRMPD4|9758|FERM and PDZ domain containing 4##NM_014728|FRMPD4|9758|FERM and PDZ domain containing 4##AK289694|FRMPD4|9758|FERM and PDZ domain containing 4##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2	0.0	0.024908	
chr1	12209288	12209426	reg1009986.p2	4.356	+	D86042 BC063482 NM_152942 BC073839 BC141804	-23341	+	M83554 NM_001243 BC136400 BC171762 S75768	-85813	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-129787	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	17704	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	17754	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	80750	+	D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)	0.0	0.0	
chr17	28601806	28601913	reg1004124.p1	4.356	+	NM_001045	-38906	-	TSC_hg19_v1_chr17_+_28443846 AK297102 AL136806 NM_032141 AK094552 BC062425 AK313963 BC105044 BC105046 BC143417 BC143539 BC046116 BC040118 AF161358 BC016313 AB462988 AM392705 AM392719 CR533555	-158018	+	NM_198529 BX648689 BC137519	-333155	+	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	17100	-	NM_000386 TSC_hg19_v1_chr17_-_28619220	17344	-	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	59203	-	NM_001045|SLC6A4|6532|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4##AK297102|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AL136806|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_032141|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK094552|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC062425|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK313963|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105044|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105046|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143417|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143539|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC046116|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC040118|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AF161358|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC016313|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392705|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392719|NSRP1|84081|nuclear speckle splicing regulatory protein 1##CR533555|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_000386|BLMH|642|bleomycin hydrolase##AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1	0.985294	0.0	denovo_WM_7:-18:0.943
chr21	34777210	34777344	reg1008782.p1	4.356	+	TSC_hg19_v1_chr21_+_34775780 AB463788 DQ892320 DQ895522	-1464	+	AK314005 TSC_hg19_v1_chr21_+_34775746 AK292246	-1529	+	TSC_hg19_v1_chr21_+_34775735 BC003624 U05877	-1545	+	TSC_hg19_v1_chr21_-_34787167 DQ655977	9931	-	TSC_hg19_v1_chr21_-_34852209 AK310701	74910	-	TSC_hg19_v1_chr21_-_34852239 AY358634 BC000569 AK309977 BX537378 AF045606	74972	-	DQ892320|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##DQ895522|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK314005|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK292246|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##BC003624|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##U05877|IFNGR2|3460|interferon gamma receptor 2 (interferon gamma transducer 1)##AK310701|TMEM50B|757|transmembrane protein 50B##AY358634|TMEM50B|757|transmembrane protein 50B##BC000569|TMEM50B|757|transmembrane protein 50B##AK309977|TMEM50B|757|transmembrane protein 50B##AF045606|TMEM50B|757|transmembrane protein 50B	0.0	0.0	
chr7	102083215	102083328	reg1009950.p1	4.356	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-9230	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-9294	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-46429	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	21962	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	22046	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	22137	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	0.996749	0.0	denovo_WM_7:41:0.971
chr10	104813797	104813893	reg1005792.p1	4.355	+	TSC_hg19_v1_chr10_+_104678078 BC021222 AK023479 NM_017649 NM_199076 NM_199077	-135788	+	NM_020682 AK057833 AK225972 AF226730 AK309737 BC119637 BC119638	-184588	+	NM_001136200 NM_144591 AL832477 TSC_hg19_v1_chr10_+_104614015 AK098071 BC015994 BC040069 AK311742	-199844	+	BX648078 TSC_hg19_v1_chr10_-_104953030 BC001595 AK127670 AK291667 AK312517 D38524 NM_001134373 NM_012229	139202	-	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	191828	+	TSC_hg19_v1_chr10_+_105036894 BC006359 NM_032727 S78296 DQ892733 DQ895980	223028	+	BC021222|CNNM2|54805|cyclin M2##AK023479|CNNM2|54805|cyclin M2##NM_017649|CNNM2|54805|cyclin M2##NM_199076|CNNM2|54805|cyclin M2##NM_199077|CNNM2|54805|cyclin M2##NM_020682|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK057833|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK225972|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AF226730|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##AK309737|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119637|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##BC119638|AS3MT|57412|arsenic (+3 oxidation state) methyltransferase##NM_001136200|C10orf32|119032|chromosome 10 open reading frame 32##NM_144591|C10orf32|119032|chromosome 10 open reading frame 32##AL832477|C10orf32|119032|chromosome 10 open reading frame 32##AK098071|C10orf32|119032|chromosome 10 open reading frame 32##BC015994|C10orf32|119032|chromosome 10 open reading frame 32##BC040069|C10orf32-AS3MT|100528007|C10orf32-AS3MT readthrough##AK311742|C10orf32|119032|chromosome 10 open reading frame 32##BX648078|NT5C2|22978|5'-nucleotidase, cytosolic II##BC001595|NT5C2|22978|5'-nucleotidase, cytosolic II##AK127670|NT5C2|22978|5'-nucleotidase, cytosolic II##AK291667|NT5C2|22978|5'-nucleotidase, cytosolic II##AK312517|NT5C2|22978|5'-nucleotidase, cytosolic II##D38524|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_001134373|NT5C2|22978|5'-nucleotidase, cytosolic II##NM_012229|NT5C2|22978|5'-nucleotidase, cytosolic II##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE##BC006359|INA|9118|internexin neuronal intermediate filament protein, alpha##NM_032727|INA|9118|internexin neuronal intermediate filament protein, alpha##S78296|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ892733|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ895980|INA|9118|internexin neuronal intermediate filament protein, alpha	0.0	0.0	
chr12	123890067	123890217	reg1013352.p1	4.355	+	AY064546 TSC_hg19_v1_chr12_+_123873657	-16513	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	-21419	+	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	-21487	+	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	30870	-	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	31099	-	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	52561	+	AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)	1.208944	0.0	
chr12	66696695	66696846	reg1013828.p2	4.355	+	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-441	+	BC069388 AK298645 TSC_hg19_v1_chr12_+_66583064 AB590803 CU691242	-113717	+	TSC_hg19_v1_chr12_+_66583004 AF113136	-113760	+	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	375986	-	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	376132	-	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	966332	+	NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##BC069388|IRAK3|11213|interleukin-1 receptor-associated kinase 3##AK298645|IRAK3|11213|interleukin-1 receptor-associated kinase 3##AF113136|IRAK3|11213|interleukin-1 receptor-associated kinase 3##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1	1.558255	0.0	denovo_WM_7:2:0.826
chr15	31195965	31196085	reg1011570.p2	4.355	+	BC105788 NM_001039841	-277147	+	TSC_hg19_v1_chr15_+_30918372 BC071990	-277639	+	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	-510313	-	BC047882 NM_001146095 NM_001146094 NM_001146096 NM_014967 TSC_hg19_v1_chr15_+_31196088 BX647391 AK290987	49	+	CR936734 CR936727 TSC_hg19_v1_chr15_+_31196114 AB023235	92	+	AK000320 AB528758 AM392869 TSC_hg19_v1_chr15_-_31283808 BC094750 BC063296 NM_017762	87742	-	BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC047882|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146095|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146094|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_001146096|FAN1|22909|FANCD2/FANCI-associated nuclease 1##NM_014967|FAN1|22909|FANCD2/FANCI-associated nuclease 1##BX647391|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK290987|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936734|FAN1|22909|FANCD2/FANCI-associated nuclease 1##CR936727|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AB023235|FAN1|22909|FANCD2/FANCI-associated nuclease 1##AK000320|MTMR10|54893|myotubularin related protein 10##AM392869|MTMR10|54893|myotubularin related protein 10##BC094750|MTMR10|54893|myotubularin related protein 10##BC063296|MTMR10|54893|myotubularin related protein 10##NM_017762|MTMR10|54893|myotubularin related protein 10	0.0	0.0	
chr16	1343833	1343944	reg1013108.p1	4.355	+	NM_012217 BC069143	-37612	+	NM_003294 BC074974 BC074975 BC029356	-53197	+	BC065923 AK308208 BC029356 NM_024164 BC074974	-63710	-	NM_194260 NM_194261	15265	+	TSC_hg19_v1_chr16_+_1359631 NM_003345 NM_194259	15740	+	AK291118 TSC_hg19_v1_chr16_+_1359639	15754	+	NM_012217|TPSD1|23430|tryptase delta 1##BC069143|TPSD1|23430|tryptase delta 1##NM_003294|TPSAB1|7177|tryptase alpha/beta 1##BC074974|TPSAB1|7177|tryptase alpha/beta 1##BC074975|TPSAB1|7177|tryptase alpha/beta 1##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC065923|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##AK308208|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC029356|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##NM_024164|TPSB2|64499|tryptase beta 2 (gene/pseudogene)##BC074974|TPSAB1|7177|tryptase alpha/beta 1##NM_194260|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194261|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_003345|UBE2I|7329|ubiquitin-conjugating enzyme E2I##NM_194259|UBE2I|7329|ubiquitin-conjugating enzyme E2I##AK291118|UBE2I|7329|ubiquitin-conjugating enzyme E2I	0.997027	0.0	denovo_WM_7:-36:0.697	denovo_WM_7:-37:0.260
chr19	11530797	11530919	reg1014204.p1	4.355	+	AK074082 TSC_hg19_v1_chr19_-_11529991 BC064475 AK057147 AK293404 AK298281 BC101756 BC111958 BC143530 BC014426 NM_001035223 NM_001161616	-870	-	M34986 AB527807 BC112153 BC143697 BC143698 BC143700 AK315097 M60459 BC019092 NM_000121	-35909	-	BC068071 AK092438 AX747546 NM_175871 BC119677	-45485	+	AK056363 BC141828 BC142637 AK294355 AK308072 NM_145045 BC036041 BC050355	15091	-	TSC_hg19_v1_chr19_+_11546106 NM_001001329 NM_002743	15318	+	TSC_hg19_v1_chr19_+_11546455 AK296187 AK130663 AK225279	15595	+	BC064475|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK057147|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK293404|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##AK298281|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC101756|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC111958|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC143530|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##BC014426|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001035223|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##NM_001161616|RGL3|57139|ral guanine nucleotide dissociation stimulator-like 3##M34986|EPOR|2057|erythropoietin receptor##BC112153|EPOR|2057|erythropoietin receptor##BC143697|EPOR|2057|erythropoietin receptor##BC143698|EPOR|2057|erythropoietin receptor##BC143700|EPOR|2057|erythropoietin receptor##AK315097|EPOR|2057|erythropoietin receptor##M60459|EPOR|2057|erythropoietin receptor##BC019092|EPOR|2057|erythropoietin receptor##NM_000121|EPOR|2057|erythropoietin receptor##BC068071|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK092438|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##NM_175871|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##BC119677|SWSAP1|126074|SWIM-type zinc finger 7 associated protein 1##AK056363|CCDC151|115948|coiled-coil domain containing 151##BC141828|CCDC151|115948|coiled-coil domain containing 151##BC142637|CCDC151|115948|coiled-coil domain containing 151##AK294355|CCDC151|115948|coiled-coil domain containing 151##AK308072|CCDC151|115948|coiled-coil domain containing 151##NM_145045|CCDC151|115948|coiled-coil domain containing 151##BC036041|CCDC151|115948|coiled-coil domain containing 151##BC050355|CCDC151|115948|coiled-coil domain containing 151##NM_001001329|PRKCSH|5589|protein kinase C substrate 80K-H##NM_002743|PRKCSH|5589|protein kinase C substrate 80K-H##AK296187|PRKCSH|5589|protein kinase C substrate 80K-H##AK130663|PRKCSH|5589|protein kinase C substrate 80K-H##AK225279|PRKCSH|5589|protein kinase C substrate 80K-H	1.793415	0.0	denovo_WM_7:-24:0.407	denovo_WM_7:-25:0.400	denovo_WM_7:-39:0.411	denovo_WM_7:-40:0.387
chr19	34716919	34717041	reg1012357.p1	4.355	+	TSC_hg19_v1_chr19_+_34710343 AL117499	-6600	+	TSC_hg19_v1_chr19_+_34663440 AL834398 AK027643 AB069974 AB069975	-53512	+	TSC_hg19_v1_chr19_+_34663429 AK300208	-53554	+	TSC_hg19_v1_chr19_+_34745535 NM_014686 AB002353 BX648432	28530	+	TSC_hg19_v1_chr19_+_34856083 NM_001184722 AK294396 NM_000175	138860	+	TSC_hg19_v1_chr19_+_34856150 AB209575 AK301103	139158	+	AL117499|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AL834398|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK027643|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069974|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069975|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK300208|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##NM_014686|KIAA0355|9710|KIAA0355##AB002353|KIAA0355|9710|KIAA0355##NM_001184722|GPI|2821|glucose-6-phosphate isomerase##AK294396|GPI|2821|glucose-6-phosphate isomerase##NM_000175|GPI|2821|glucose-6-phosphate isomerase##AB209575|GPI|2821|glucose-6-phosphate isomerase##AK301103|GPI|2821|glucose-6-phosphate isomerase	0.988609	0.0	denovo_WM_7:-4:0.918
chr2	64894208	64894388	reg1009146.p1	4.355	+	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-13251	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-13449	-	TSC_hg19_v1_chr2_+_64751580 AL833962	-142696	+	TSC_hg19_v1_chr2_-_65090764 AK097952	196443	-	TSC_hg19_v1_chr2_-_65159574 BC037562	265279	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	321302	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##AL833962|AFTPH|54812|aftiphilin##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	0.0	0.0	
chr6	16905157	16905324	reg1011435.p1	4.355	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	-143543	-	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-666389	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-761930	+	NM_001190766	197248	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	376614	+	NM_001143941	377054	+	BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr7	65703448	65703535	reg1007375.p2	4.355	+	TSC_hg19_v1_chr7_+_65670320 NM_003596 AK307053 AK313098	-33182	+	TSC_hg19_v1_chr7_+_65579866 BC040107 BX647867 U51134	-123589	+	TSC_hg19_v1_chr7_+_65579836 AK290553 AK311829 BC105808	-123656	+	TSC_hg19_v1_chr7_+_65958724 AY726579	255212	+	TSC_hg19_v1_chr7_-_66057374 BC080520 BC057835 BC067867 AK310548 BC103766 AK310370 AK296922	353870	-	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	390383	+	NM_003596|TPST1|8460|tyrosylprotein sulfotransferase 1##AK307053|TPST1|8460|tyrosylprotein sulfotransferase 1##AK313098|TPST1|8460|tyrosylprotein sulfotransferase 1##BC040107|CRCP|27297|CGRP receptor component##BX647867|CRCP|27297|CGRP receptor component##U51134|CRCP|27297|CGRP receptor component##AK290553|CRCP|27297|CGRP receptor component##AK311829|CRCP|27297|CGRP receptor component##BC105808|CRCP|27297|CGRP receptor component##AK310548|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##BC103766|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK310370|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK296922|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7	0.999894	0.0	
chrX	44402190	44402319	reg1009033.p1	4.355	+	TSC_hg19_v1_chrX_-_44402101 BC035015 BC042813 NM_173794	-100	-	CU689086 AK292967 AK026496 AK297714 BC031039 NM_025184 AK291187	-199306	-	NM_000266	-569334	-	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	301059	+	TSC_hg19_v1_chrX_+_44732433 NM_021140 AB208795	330182	+	BC035375 AY358764 TSC_hg19_v1_chrX_-_45060106 BC137528 BC137529 AK024165 NM_024689 NM_176819	657859	-	BC035015|FUNDC1|139341|FUN14 domain containing 1##BC042813|FUNDC1|139341|FUN14 domain containing 1##NM_173794|FUNDC1|139341|FUN14 domain containing 1##AK292967|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK026496|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK297714|EFHC2|80258|EF-hand domain (C-terminal) containing 2##BC031039|EFHC2|80258|EF-hand domain (C-terminal) containing 2##NM_025184|EFHC2|80258|EF-hand domain (C-terminal) containing 2##AK291187|EFHC2|80258|EF-hand domain (C-terminal) containing 2##NM_000266|NDP|4693|Norrie disease (pseudoglioma)##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21##NM_021140|KDM6A|7403|lysine (K)-specific demethylase 6A##AB208795|KDM6A|7403|lysine (K)-specific demethylase 6A##BC035375|CXorf36|79742|chromosome X open reading frame 36##AY358764|CXorf36|79742|chromosome X open reading frame 36##BC137528|CXorf36|79742|chromosome X open reading frame 36##BC137529|CXorf36|79742|chromosome X open reading frame 36##AK024165|CXorf36|79742|chromosome X open reading frame 36##NM_024689|CXorf36|79742|chromosome X open reading frame 36##NM_176819|CXorf36|79742|chromosome X open reading frame 36	0.0	0.0	
chr15	78592263	78592364	reg1013003.p2	4.354	+	TSC_hg19_v1_chr15_-_78591935 AF127799 AF100786 BC010080 AK311320 BC002565 AK024754 NM_025234 AK300838 AK304617 AK310477	-340	-	BC031044 NM_001130183	-33773	+	TSC_hg19_v1_chr15_+_78556901 AK096616 NM_001130182	-35369	+	TSC_hg19_v1_chr15_+_78632694 NM_004378 AB593091 BC022069 S74445 DQ896830 EU176284 CR457017 AL110113	40390	+	TSC_hg19_v1_chr15_+_78730557 NM_004136	138208	+	TSC_hg19_v1_chr15_+_78730595 AB209403 BC017880 AK292992 BC117481 BC117483 BC143948 AB586699 HQ258663 M58511	138310	+	AF127799|WDR61|80349|WD repeat domain 61##AF100786|WDR61|80349|WD repeat domain 61##BC010080|WDR61|80349|WD repeat domain 61##AK311320|WDR61|80349|WD repeat domain 61##AK024754|WDR61|80349|WD repeat domain 61##NM_025234|WDR61|80349|WD repeat domain 61##AK300838|WDR61|80349|WD repeat domain 61##AK304617|WDR61|80349|WD repeat domain 61##BC031044|DNAJA4|55466|DnaJ (Hsp40) homolog, subfamily A, member 4##NM_001130183|DNAJA4|55466|DnaJ (Hsp40) homolog, subfamily A, member 4##AK096616|DNAJA4|55466|DnaJ (Hsp40) homolog, subfamily A, member 4##NM_001130182|DNAJA4|55466|DnaJ (Hsp40) homolog, subfamily A, member 4##NM_004378|CRABP1|1381|cellular retinoic acid binding protein 1##AB593091|CRABP1|1381|cellular retinoic acid binding protein 1##BC022069|CRABP1|1381|cellular retinoic acid binding protein 1##S74445|CRABP1|1381|cellular retinoic acid binding protein 1##DQ896830|CRABP1|1381|cellular retinoic acid binding protein 1##EU176284|CRABP1|1381|cellular retinoic acid binding protein 1##CR457017|CRABP1|1381|cellular retinoic acid binding protein 1##AL110113|CRABP1|1381|cellular retinoic acid binding protein 1##NM_004136|IREB2|3658|iron-responsive element binding protein 2##AB209403|IREB2|3658|iron-responsive element binding protein 2##BC017880|IREB2|3658|iron-responsive element binding protein 2##AK292992|IREB2|3658|iron-responsive element binding protein 2##BC117481|IREB2|3658|iron-responsive element binding protein 2##BC117483|IREB2|3658|iron-responsive element binding protein 2##BC143948|IREB2|3658|iron-responsive element binding protein 2##HQ258663|IREB2|3658|iron-responsive element binding protein 2##M58511|IREB2|3658|iron-responsive element binding protein 2	0.999297	0.0	
chr3	187931837	187931939	reg1008952.p1	4.354	+	NM_005578 U49957	-1168	+	TSC_hg19_v1_chr3_-_187871925 BC042414	-60018	-	TSC_hg19_v1_chr3_+_187871663 NM_001167672 AK304035	-60253	+	NM_001167671 BC130584 BC144076	11346	+	TSC_hg19_v1_chr3_+_188664993 AK123232	733082	+	AK125682 NM_198485 BC101550 BC101552	957923	+	NM_005578|LPP|4026|LIM domain containing preferred translocation partner in lipoma##U49957|LPP|4026|LIM domain containing preferred translocation partner in lipoma##BC042414|LPP-AS2|339929|LPP antisense RNA 2 (non-protein coding)##NM_001167672|LPP|4026|LIM domain containing preferred translocation partner in lipoma##AK304035|LPP|4026|LIM domain containing preferred translocation partner in lipoma##NM_001167671|LPP|4026|LIM domain containing preferred translocation partner in lipoma##BC130584|LPP|4026|LIM domain containing preferred translocation partner in lipoma##BC144076|LPP|4026|LIM domain containing preferred translocation partner in lipoma##AK123232|TPRG1|285386|tumor protein p63 regulated 1##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1	0.996048	0.0	denovo_WM_7:26:0.905
chr1	146535175	146535312	reg1009363.p1	4.353	+	BC136292 NM_183372 AL832622	-452545	-	AF419617 NM_001101663	-466999	-	NM_001097616	-651376	+	AJ224538 HQ257946 TSC_hg19_v1_chr1_-_146643798	108522	-	AK316005 AK292820 AK304069 AK310982 BC053610 NM_005399 AK294863 AK316183	108849	-	AK295985 TSC_hg19_v1_chr1_+_146649617	114337	+	BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11##AL832622|NBPF24|728912|neuroblastoma breakpoint family, member 24##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##AJ224538|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##HQ257946|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##AK316005|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##AK292820|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##AK304069|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##AK310982|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##BC053610|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##NM_005399|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##AK294863|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##AK316183|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit	0.99503	0.0	
chr16	15241789	15241969	reg1010790.p2	4.353	+	AB527833 AK300253 HQ258337 BC036182 AK314769 AK316520 BC132688 BC132690 BC104660 AJ272050 AF227156 NM_018427 AK225662	-53751	-	CU675948 AF092440 BC017336 NM_173474 AK300557 TSC_hg19_v1_chr16_-_15149897	-92002	-	AY203955 TSC_hg19_v1_chr16_+_15069016 DQ111782	-172847	+	TSC_hg19_v1_chr16_+_15489610 DQ004255 DQ004256 NM_001128423 NM_173803	247722	+	TSC_hg19_v1_chr16_+_15489637 AK096918 AK293380 BC061514	247771	+	AK057180 NM_033201 TSC_hg19_v1_chr16_+_15528363 AK293431 BC008967	286521	+	AK300253|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##HQ258337|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC036182|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK314769|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK316520|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132688|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC132690|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##BC104660|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AJ272050|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF227156|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##NM_018427|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AK225662|RRN3|54700|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)##AF092440|NTAN1|123803|N-terminal asparagine amidase##BC017336|NTAN1|123803|N-terminal asparagine amidase##NM_173474|NTAN1|123803|N-terminal asparagine amidase##AK300557|NTAN1|123803|N-terminal asparagine amidase##AY203955|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ111782|PDXDC1|23042|pyridoxal-dependent decarboxylase domain containing 1##DQ004255|MPV17L|255027|MPV17 mitochondrial membrane protein-like##DQ004256|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_001128423|MPV17L|255027|MPV17 mitochondrial membrane protein-like##NM_173803|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK096918|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK293380|MPV17L|255027|MPV17 mitochondrial membrane protein-like##BC061514|MPV17L|255027|MPV17 mitochondrial membrane protein-like##AK057180|C16orf45|89927|chromosome 16 open reading frame 45##NM_033201|C16orf45|89927|chromosome 16 open reading frame 45##AK293431|C16orf45|89927|chromosome 16 open reading frame 45##BC008967|C16orf45|89927|chromosome 16 open reading frame 45	0.979612	0.0	denovo_WM_7:-19:0.758
chr10	3214897	3214963	reg1011357.p2	4.352	+	BC045577 TSC_hg19_v1_chr10_-_3214936	-5	-	TSC_hg19_v1_chr10_+_3160984 M64784	-53945	+	BC021698 TSC_hg19_v1_chr10_+_3151628	-63318	+	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	40	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	75	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	612381	-	BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##M64784|PFKP|5214|phosphofructokinase, platelet##BC021698|PFKP|5214|phosphofructokinase, platelet##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6	0.0	0.0	
chr14	50396540	50396720	reg1002690.p1	4.352	+	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-36224	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-36797	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	-36812	+	AK091232 AX746864 NM_001012706	77607	-	AF390030 NM_001014830	162730	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	186640	-	AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D	2.843614	0.0	denovo_WM_7:-20:0.805	denovo_WM_7:-36:0.825	denovo_WM_7:-95:0.494	denovo_WM_7:-96:0.494
chr18	8620165	8620246	reg1008543.p2	4.352	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	-10459	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	-10769	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-673299	+	AK131528 NM_015210	97163	+	AB384528 TSC_hg19_v1_chr18_+_8718600	98319	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	482417	+	BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	2.961971	0.0	denovo_WM_7:-34:0.977
chr19	17236238	17236418	reg1006168.p2	4.352	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-49735	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-50007	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-98788	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	89844	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	89877	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	100706	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	0.0	0.0	
chr22	22165007	22165114	reg1010546.p1	4.352	+	BC034486 BC074501 TSC_hg19_v1_chr22_-_22090057 BC048303 NM_013313 AB098734 AB098735	-75012	-	NM_014337 NM_148175 NM_148176 TSC_hg19_v1_chr22_+_22020298 AF320072 AK289545 BC000022 U37219 AK127259 BC028385 AK299206 CR456548 DQ891659 DQ894846 AB463162 CU013148 CU013436 CU673996 CU688484	-144731	+	TSC_hg19_v1_chr22_+_21996619 CR456570 AF277316 AB528230 BC139837 CU013169 CU013457	-168421	+	TSC_hg19_v1_chr22_-_22221936 DQ399292 AB384931 EU176323 EU831429 EU831522 AK307615 Z11694 AK090869 BC099905	56769	-	AK295188 TSC_hg19_v1_chr22_-_22221938	56877	-	TSC_hg19_v1_chr22_-_22221955 BC017832 NM_002745 NM_138957	56910	-	BC034486|YPEL1|29799|yippee-like 1 (Drosophila)##BC074501|YPEL1|29799|yippee-like 1 (Drosophila)##BC048303|YPEL1|29799|yippee-like 1 (Drosophila)##NM_013313|YPEL1|29799|yippee-like 1 (Drosophila)##AB098734|YPEL1|29799|yippee-like 1 (Drosophila)##AB098735|YPEL1|29799|yippee-like 1 (Drosophila)##NM_014337|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148175|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148176|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AF320072|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK289545|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC000022|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##U37219|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK127259|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC028385|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK299206|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456548|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ891659|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ894846|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013148|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013436|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456570|SDF2L1|23753|stromal cell-derived factor 2-like 1##AF277316|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC139837|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013169|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013457|SDF2L1|23753|stromal cell-derived factor 2-like 1##DQ399292|MAPK1|5594|mitogen-activated protein kinase 1##EU176323|MAPK1|5594|mitogen-activated protein kinase 1##EU831429|MAPK1|5594|mitogen-activated protein kinase 1##EU831522|MAPK1|5594|mitogen-activated protein kinase 1##AK307615|MAPK1|5594|mitogen-activated protein kinase 1##Z11694|MAPK1|5594|mitogen-activated protein kinase 1##AK090869|MAPK1|5594|mitogen-activated protein kinase 1##BC099905|MAPK1|5594|mitogen-activated protein kinase 1##AK295188|MAPK1|5594|mitogen-activated protein kinase 1##BC017832|MAPK1|5594|mitogen-activated protein kinase 1##NM_002745|MAPK1|5594|mitogen-activated protein kinase 1##NM_138957|MAPK1|5594|mitogen-activated protein kinase 1	1.834591	0.0	denovo_WM_7:69:0.664	denovo_WM_7:-72:0.346
chr10	18790705	18790797	reg1012244.p2	4.351	+	NM_201570 AK299873 AK295113	-101188	+	AK310943 NM_201590	-161138	+	NM_000724 AB208917 U95019	-241111	+	AK074323 BC035778 NM_182543	149781	-	BC033534 TSC_hg19_v1_chr10_-_18948215	157446	-	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	157670	+	NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B	0.0	0.0	
chr1	225488400	225488487	reg1012053.p1	4.351	+	TSC_hg19_v1_chr1_+_225117383 NM_001145154 NM_001373 NM_144989 BC119716 BC119717 BC042869	-371078	+	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	-684264	+	AB209887 NM_001115113 NM_025160	-866443	-	AK222834 TSC_hg19_v1_chr1_-_225615757 L25931 AB209514 BC020079 AK303589 AK312258	127286	-	TSC_hg19_v1_chr1_-_225615798 NM_002296	127358	-	NM_194442	128113	-	NM_001145154|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_001373|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_144989|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119716|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119717|DNAH14|127602|dynein, axonemal, heavy chain 14##BC042869|DNAH14|127602|dynein, axonemal, heavy chain 14##AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)##AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK222834|LBR|3930|lamin B receptor##L25931|LBR|3930|lamin B receptor##AB209514|LBR|3930|lamin B receptor##BC020079|LBR|3930|lamin B receptor##AK303589|LBR|3930|lamin B receptor##AK312258|LBR|3930|lamin B receptor##NM_002296|LBR|3930|lamin B receptor##NM_194442|LBR|3930|lamin B receptor	0.350899	0.0	denovo_WM_7:5:0.224
chr15	63450576	63450695	reg1011032.p2	4.351	+	BC031307 TSC_hg19_v1_chr15_-_63449677 AF070668 BC003667 BC047648 AK024591 NM_015920	-1026	-	TSC_hg19_v1_chr15_+_63414037 AY358709 BC037198	-36582	+	NM_032857 NM_171846 BC067288 TSC_hg19_v1_chr15_+_63414026 AK027808	-36619	+	TSC_hg19_v1_chr15_+_63481724 NM_016530 AB038995	31094	+	TSC_hg19_v1_chr15_+_63481804 AK001111 AK095444 AK297598 AL833365 BC020654 AB464123 CU676608	31170	+	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	119178	+	BC031307|RPS27L|51065|ribosomal protein S27-like##AF070668|RPS27L|51065|ribosomal protein S27-like##BC003667|RPS27L|51065|ribosomal protein S27-like##BC047648|RPS27L|51065|ribosomal protein S27-like##AK024591|RPS27L|51065|ribosomal protein S27-like##NM_015920|RPS27L|51065|ribosomal protein S27-like##AY358709|LACTB|114294|lactamase, beta##BC037198|LACTB|114294|lactamase, beta##NM_032857|LACTB|114294|lactamase, beta##NM_171846|LACTB|114294|lactamase, beta##BC067288|LACTB|114294|lactamase, beta##AK027808|LACTB|114294|lactamase, beta##NM_016530|RAB8B|51762|RAB8B, member RAS oncogene family##AB038995|RAB8B|51762|RAB8B, member RAS oncogene family##AK001111|RAB8B|51762|RAB8B, member RAS oncogene family##AK095444|RAB8B|51762|RAB8B, member RAS oncogene family##AK297598|RAB8B|51762|RAB8B, member RAS oncogene family##AL833365|RAB8B|51762|RAB8B, member RAS oncogene family##BC020654|RAB8B|51762|RAB8B, member RAS oncogene family##NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)	0.992262	0.0	
chr17	70951256	70951431	reg1013538.p1	4.351	+	AK000477 TSC_hg19_v1_chr17_-_70588944	-362400	-	TSC_hg19_v1_chr17_+_70117187 BC007951	-834103	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-834173	+	AF331643 TSC_hg19_v1_chr17_-_71088816	137473	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	137480	-	BC035631 TSC_hg19_v1_chr17_-_71088831	137488	-	AK000477|LOC100499467|100499467|uncharacterized LOC100499467##BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##BC035631|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.992059	0.0	
chr18	43266840	43267019	reg1002011.p1	4.351	+	AF349446 NM_007163	-72164	+	NM_001242692 AK292422	-473977	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-1006061	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	37175	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	37228	+	NM_001146037	39988	+	AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	0.0	0.0	
chr2	61669561	61669739	reg1014377.p1	4.351	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-264861	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-265008	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-265067	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	28207	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	28293	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	95108	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	0.991331	0.0	denovo_WM_7:-100:0.777
chr2	97430648	97430752	reg1007566.p1	4.351	+	TSC_hg19_v1_chr2_+_97426638 BC063295 NM_020184 AF202777 AB046812	-3951	+	AK304515 AK075347 AK295463 AK299740 AK301077 AK308085 AK316331 AL136617 TSC_hg19_v1_chr2_-_97405802 AK312249 NM_001142292 NM_030805 AK310100	-24887	-	BC000347 BC005822 BC005862 AB528167 AJ549957 AM392707 EU831637 EU831721 TSC_hg19_v1_chr2_-_97405791 BC067265 AY358929 AK222828 BX648002	-24917	-	AK293915 TSC_hg19_v1_chr2_+_97454352	23637	+	TSC_hg19_v1_chr2_+_97482006 BC037272 AK126847 NM_017623 NM_199078 BC007199 AF216965 AK000025 CU675553	51782	+	AF492401 AY196212 BC107056 AK057011 AK092564 AX747600 NM_144994	79045	-	BC063295|CNNM4|26504|cyclin M4##NM_020184|CNNM4|26504|cyclin M4##AF202777|CNNM4|26504|cyclin M4##AB046812|CNNM4|26504|cyclin M4##AK304515|LMAN2L|81562|lectin, mannose-binding 2-like##AK075347|LMAN2L|81562|lectin, mannose-binding 2-like##AK295463|LMAN2L|81562|lectin, mannose-binding 2-like##AK299740|LMAN2L|81562|lectin, mannose-binding 2-like##AK301077|LMAN2L|81562|lectin, mannose-binding 2-like##AK308085|LMAN2L|81562|lectin, mannose-binding 2-like##AK316331|LMAN2L|81562|lectin, mannose-binding 2-like##AL136617|LMAN2L|81562|lectin, mannose-binding 2-like##AK312249|LMAN2L|81562|lectin, mannose-binding 2-like##NM_001142292|LMAN2L|81562|lectin, mannose-binding 2-like##NM_030805|LMAN2L|81562|lectin, mannose-binding 2-like##AK310100|LMAN2L|81562|lectin, mannose-binding 2-like##BC000347|LMAN2L|81562|lectin, mannose-binding 2-like##BC005822|LMAN2L|81562|lectin, mannose-binding 2-like##BC005862|LMAN2L|81562|lectin, mannose-binding 2-like##AJ549957|LMAN2L|81562|lectin, mannose-binding 2-like##AM392707|LMAN2L|81562|lectin, mannose-binding 2-like##EU831637|LMAN2L|81562|lectin, mannose-binding 2-like##EU831721|LMAN2L|81562|lectin, mannose-binding 2-like##BC067265|LMAN2L|81562|lectin, mannose-binding 2-like##AY358929|LMAN2L|81562|lectin, mannose-binding 2-like##AK222828|LMAN2L|81562|lectin, mannose-binding 2-like##BX648002|LMAN2L|81562|lectin, mannose-binding 2-like##AK293915|CNNM4|26504|cyclin M4##BC037272|CNNM3|26505|cyclin M3##AK126847|CNNM3|26505|cyclin M3##NM_017623|CNNM3|26505|cyclin M3##NM_199078|CNNM3|26505|cyclin M3##BC007199|CNNM3|26505|cyclin M3##AF216965|CNNM3|26505|cyclin M3##AK000025|CNNM3|26505|cyclin M3##AF492401|ANKRD23|200539|ankyrin repeat domain 23##AY196212|ANKRD23|200539|ankyrin repeat domain 23##BC107056|ANKRD23|200539|ankyrin repeat domain 23##AK057011|ANKRD23|200539|ankyrin repeat domain 23##AK092564|ANKRD23|200539|ankyrin repeat domain 23##NM_144994|ANKRD23|200539|ankyrin repeat domain 23	2.300864	0.0	
chr6	116212926	116213040	reg1013772.p2	4.351	+	AF503292 NM_153612 BC093911 BC093913	-1828959	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-1920647	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	-1920711	-	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	168899	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	209026	+	AK097758 TSC_hg19_v1_chr6_-_116422450	209447	-	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1	0.0	0.0	
chr8	11482003	11482117	reg1011265.p1	4.351	+	S76617 NM_001715 BC018703 BC004473 BC038555	-130467	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-157831	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-277056	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	79660	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	145208	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	178124	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	1.172706	0.0	denovo_WM_7:-24:0.456	denovo_WM_7:-25:0.456
chr2	192648270	192648423	reg1015261.p1	4.350	+	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	-105484	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-538248	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-632039	-	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	63392	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	63625	-	CR457390 DQ133599 AK074507 AB004064 TSC_hg19_v1_chr2_-_193059378	410968	-	NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response##CR457390|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##DQ133599|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AK074507|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2##AB004064|TMEFF2|23671|transmembrane protein with EGF-like and two follistatin-like domains 2	0.56634	0.0	denovo_WM_7:85:0.356
chr7	138200013	138200151	reg1011989.p2	4.350	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	-54846	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	-55090	+	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	-438864	+	BC036796 NM_174959	148886	-	NM_001139456	163707	-	NM_130841	258699	-	AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC036796|SVOPL|136306|SVOP-like##NM_174959|SVOPL|136306|SVOP-like##NM_001139456|SVOPL|136306|SVOP-like##NM_130841|ATP6V0A4|50617|ATPase, H+ transporting, lysosomal V0 subunit a4	0.0	0.0	
chr12	12584088	12584207	reg1006732.p1	4.349	+	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-73982	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-80975	-	BC117136 BC126405 BC143725 AF074264 NM_002336 TSC_hg19_v1_chr12_-_12419947	-164305	-	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	131253	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	180648	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	180736	+	NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC117136|LRP6|4040|low density lipoprotein receptor-related protein 6##BC126405|LRP6|4040|low density lipoprotein receptor-related protein 6##BC143725|LRP6|4040|low density lipoprotein receptor-related protein 6##AF074264|LRP6|4040|low density lipoprotein receptor-related protein 6##NM_002336|LRP6|4040|low density lipoprotein receptor-related protein 6##AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2	0.0	0.0	
chr19	58913134	58913314	reg1011219.p2	4.349	+	NM_001195135	-5768	+	TSC_hg19_v1_chr19_+_58898635 AK223106 AK311938 D28455 NM_001009 BC015405 BC018828 BC018151 BC035830 U14970	-14572	+	TSC_hg19_v1_chr19_-_58892398 BC029960 NM_001129730 NM_138466	-20808	-	TSC_hg19_v1_chr19_+_58920045 AK290068 BC033149 NM_173548	6823	+	BC017651 TSC_hg19_v1_chr19_+_58920143 AK298929	6906	+	AK057460 NM_003433	38364	-	NM_001195135|LOC646862|646862|uncharacterized LOC646862##AK223106|RPS5|6193|ribosomal protein S5##AK311938|RPS5|6193|ribosomal protein S5##D28455|RPS5|6193|ribosomal protein S5##NM_001009|RPS5|6193|ribosomal protein S5##BC015405|RPS5|6193|ribosomal protein S5##BC018828|RPS5|6193|ribosomal protein S5##BC018151|RPS5|6193|ribosomal protein S5##BC035830|RPS5|6193|ribosomal protein S5##U14970|RPS5|6193|ribosomal protein S5##BC029960|ZNF837|116412|zinc finger protein 837##NM_001129730|ZNF837|116412|zinc finger protein 837##NM_138466|ZNF837|116412|zinc finger protein 837##AK290068|ZNF584|201514|zinc finger protein 584##BC033149|ZNF584|201514|zinc finger protein 584##NM_173548|ZNF584|201514|zinc finger protein 584##BC017651|ZNF584|201514|zinc finger protein 584##AK298929|ZNF584|201514|zinc finger protein 584##AK057460|ZNF132|7691|zinc finger protein 132##NM_003433|ZNF132|7691|zinc finger protein 132	1.992673	0.0	denovo_WM_7:57:0.842
chr2	60757776	60757875	reg1012656.p1	4.349	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	-2289343	-	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	-2483837	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	-2484071	+	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	22697	-	AF080216 TSC_hg19_v1_chr2_-_60780784	22953	-	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	225659	+	AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma	2.537872	0.0	denovo_WM_7:-6:0.514	denovo_WM_7:9:0.326	denovo_WM_7:10:0.328	denovo_WM_7:-80:0.201	denovo_WM_7:-81:0.201	denovo_WM_7:-82:0.204	denovo_WM_7:-83:0.203
chr6	151201715	151201813	reg1012943.p1	4.349	+	TSC_hg19_v1_chr6_+_151187310 AK315378 NM_001242768	-14375	+	TSC_hg19_v1_chr6_+_151187064 AL117452	-14663	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	-14843	+	TSC_hg19_v1_chr6_+_151561133 BC047728 NM_005100	359350	+	U81607 TSC_hg19_v1_chr6_+_151561544 AB210003 BC046095 AK307578	359764	+	TSC_hg19_v1_chr6_+_151561578 BC006094	359817	+	AK315378|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242768|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC047728|AKAP12|9590|A kinase (PRKA) anchor protein 12##NM_005100|AKAP12|9590|A kinase (PRKA) anchor protein 12##U81607|AKAP12|9590|A kinase (PRKA) anchor protein 12##AB210003|AKAP12|9590|A kinase (PRKA) anchor protein 12##BC046095|AKAP12|9590|A kinase (PRKA) anchor protein 12##AK307578|AKAP12|9590|A kinase (PRKA) anchor protein 12	0.0	0.055276	
chr6	16320361	16320541	reg1002816.p2	4.349	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-81600	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-177141	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-191014	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	441246	-	NM_001190766	782037	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	961403	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr12	121975108	121975288	reg1001022.p3	4.348	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-70124	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-137234	+	AK025614 NM_001137559	-183187	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	43061	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	43716	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	89445	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	0.0	0.0	
chr15	65117939	65118049	reg1013122.p1	4.348	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-159	-	BC131612 BC148208 AY369207 NM_194272 TSC_hg19_v1_chr15_-_65067789 AK127873	-50248	-	TSC_hg19_v1_chr15_-_64995461 BC047755 NM_002537	-122525	-	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	16113	+	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	86095	+	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	163815	-	BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC131612|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC148208|RBPMS2|348093|RNA binding protein with multiple splicing 2##AY369207|RBPMS2|348093|RNA binding protein with multiple splicing 2##NM_194272|RBPMS2|348093|RNA binding protein with multiple splicing 2##AK127873|RBPMS2|348093|RNA binding protein with multiple splicing 2##BC047755|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_002537|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.0	0.0	
chr19	1113466	1113577	reg1009563.p2	4.348	+	TSC_hg19_v1_chr19_-_1111972 BC106021	-1534	-	TSC_hg19_v1_chr19_+_1104646 NM_001039848	-8884	+	TSC_hg19_v1_chr19_+_1104068 BC010157	-9429	+	TSC_hg19_v1_chr19_-_1132221 AK125139 AK296849 AK309167 NM_001100122	18728	-	TSC_hg19_v1_chr19_-_1174256 BC052799	60707	-	TSC_hg19_v1_chr19_-_1174260 AB023180	60738	-	BC106021|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_001039848|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC010157|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##AK125139|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK296849|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK309167|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_001100122|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)	0.0	1.125978	
chr3	12933605	12933704	reg1012922.p1	4.348	+	BC011514 BC070209 X03342 D28385 AK311909 TSC_hg19_v1_chr3_-_12883042 NM_000994 NM_001007073	-50611	-	NM_001007074	-51706	-	GU727621 NM_001162499 NM_012298 BC136592 AB014567	-95448	+	TSC_hg19_v1_chr3_-_12941548 BC008088 AF055004	7954	-	AY653734 NM_014869 TSC_hg19_v1_chr3_-_13009192	75454	-	TSC_hg19_v1_chr3_-_13057189 BC071805	123564	-	BC011514|RPL32|6161|ribosomal protein L32##BC070209|RPL32|6161|ribosomal protein L32##X03342|RPL32|6161|ribosomal protein L32##D28385|RPL32|6161|ribosomal protein L32##AK311909|RPL32|6161|ribosomal protein L32##NM_000994|RPL32|6161|ribosomal protein L32##NM_001007073|RPL32|6161|ribosomal protein L32##NM_001007074|RPL32|6161|ribosomal protein L32##GU727621|CAND2|23066|cullin-associated and neddylation-dissociated 2 (putative)##NM_001162499|CAND2|23066|cullin-associated and neddylation-dissociated 2 (putative)##NM_012298|CAND2|23066|cullin-associated and neddylation-dissociated 2 (putative)##BC136592|CAND2|23066|cullin-associated and neddylation-dissociated 2 (putative)##AB014567|CAND2|23066|cullin-associated and neddylation-dissociated 2 (putative)##BC008088|IQSEC1|9922|IQ motif and Sec7 domain 1##AF055004|IQSEC1|9922|IQ motif and Sec7 domain 1##AY653734|IQSEC1|9922|IQ motif and Sec7 domain 1##NM_014869|IQSEC1|9922|IQ motif and Sec7 domain 1	0.0	0.0	
chr1	109506327	109506434	reg1009980.p2	4.347	+	TSC_hg19_v1_chr1_-_109506107 AK090563 AX746511 BC002939 AK293786 NM_001048210 NM_015127	-303	-	TSC_hg19_v1_chr1_+_109419783 AK295563 BC027732	-86593	+	TSC_hg19_v1_chr1_+_109419606 AB445462 NM_013296 AK314249	-86769	+	TSC_hg19_v1_chr1_-_109584725 AK225781 AB020700 AK289789 BC039254 BC034964 NM_001142550 NM_001142551 NM_014969	78339	-	AB587451 TSC_hg19_v1_chr1_-_109618626 X84003 BC017821 BC121180 BC121181 AK312158 NM_005645	112221	-	BC066918 AK075191 TSC_hg19_v1_chr1_+_109633380 AF164793 AK310192 BC008739 BC065186 NM_020141 AK291293 BC067116	127014	+	AK090563|CLCC1|23155|chloride channel CLIC-like 1##BC002939|CLCC1|23155|chloride channel CLIC-like 1##AK293786|AKNAD1|254268|AKNA domain containing 1##NM_001048210|CLCC1|23155|chloride channel CLIC-like 1##NM_015127|CLCC1|23155|chloride channel CLIC-like 1##AK295563|GPSM2|29899|G-protein signaling modulator 2##BC027732|GPSM2|29899|G-protein signaling modulator 2##AB445462|GPSM2|29899|G-protein signaling modulator 2##NM_013296|GPSM2|29899|G-protein signaling modulator 2##AK314249|GPSM2|29899|G-protein signaling modulator 2##AK225781|WDR47|22911|WD repeat domain 47##AB020700|WDR47|22911|WD repeat domain 47##AK289789|WDR47|22911|WD repeat domain 47##BC039254|WDR47|22911|WD repeat domain 47##BC034964|WDR47|22911|WD repeat domain 47##NM_001142550|WDR47|22911|WD repeat domain 47##NM_001142551|WDR47|22911|WD repeat domain 47##NM_014969|WDR47|22911|WD repeat domain 47##X84003|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121180|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121181|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##AK312158|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##NM_005645|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC066918|TMEM167B|56900|transmembrane protein 167B##AK075191|TMEM167B|56900|transmembrane protein 167B##AF164793|TMEM167B|56900|transmembrane protein 167B##AK310192|TMEM167B|56900|transmembrane protein 167B##BC008739|TMEM167B|56900|transmembrane protein 167B##BC065186|TMEM167B|56900|transmembrane protein 167B##NM_020141|TMEM167B|56900|transmembrane protein 167B##AK291293|TMEM167B|56900|transmembrane protein 167B##BC067116|TMEM167B|56900|transmembrane protein 167B	0.968931	0.0	denovo_WM_7:-4:0.724
chr15	38912834	38913014	reg1012702.p1	4.347	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	-55993	-	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	-166579	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	-367902	+	AK093014 AX747856 BC119016 BC119810 NM_207444	75874	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	630001	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	960405	+	EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1	0.0	0.0	
chr19	4236485	4236609	reg1008557.p1	4.347	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-7027	+	NM_133475	-53197	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	-54002	-	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	10543	+	AK056268 NM_020209	42050	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	65857	-	BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2	0.999621	0.0	
chr21	15893137	15893251	reg1015301.p2	4.347	+	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	-137721	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	-304697	+	AB463838 AY197607 NM_198996	-313946	-	BC020638 TSC_hg19_v1_chr21_-_15918637 BC029112 AF519621 AF222927 AK125144 NM_022136	25455	-	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	544023	-	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	1209131	+	AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##BC029112|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF519621|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AF222927|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK125144|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##NM_022136|SAMSN1|64092|SAM domain, SH3 domain and nuclear localization signals 1##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25	0.968118	0.0	denovo_WM_7:11:0.415	denovo_WM_7:12:0.246
chr21	27440640	27440744	reg1009776.p1	4.347	+	TSC_hg19_v1_chr21_-_27423435 BC018937	-17249	-	TSC_hg19_v1_chr21_-_27372469 X06981 X06982	-68213	-	S41242 S41243 TSC_hg19_v1_chr21_-_27253245	-187469	-	AK295621 NM_001136016 AK311717	72030	-	TSC_hg19_v1_chr21_-_27543029 EU832797 GQ129348 AB384791 AK297229 AK312326	102288	-	TSC_hg19_v1_chr21_-_27543053 X06989	102358	-	X06981|APP|351|amyloid beta (A4) precursor protein##X06982|APP|351|amyloid beta (A4) precursor protein##S41243|APP|351|amyloid beta (A4) precursor protein##AK295621|APP|351|amyloid beta (A4) precursor protein##NM_001136016|APP|351|amyloid beta (A4) precursor protein##AK311717|APP|351|amyloid beta (A4) precursor protein##EU832797|APP|351|amyloid beta (A4) precursor protein##GQ129348|APP|351|amyloid beta (A4) precursor protein##AK297229|APP|351|amyloid beta (A4) precursor protein##AK312326|APP|351|amyloid beta (A4) precursor protein##X06989|APP|351|amyloid beta (A4) precursor protein	0.999725	0.0	denovo_WM_7:-2:0.295	denovo_WM_7:-3:0.295	denovo_WM_7:-4:0.295
chr4	79535211	79535321	reg1011257.p1	4.347	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	-62358	+	NM_005139 TSC_hg19_v1_chr4_+_79472790	-62496	+	BC006366 TSC_hg19_v1_chr4_-_79103287	-431981	-	TSC_hg19_v1_chr4_+_79697501 AL137661	162217	+	NM_017593 NM_198892 TSC_hg19_v1_chr4_+_79697532	162270	+	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	162357	+	BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3##NM_005139|ANXA3|306|annexin A3##AL137661|BMP2K|55589|BMP2 inducible kinase##NM_017593|BMP2K|55589|BMP2 inducible kinase##NM_198892|BMP2K|55589|BMP2 inducible kinase##AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase	0.0	0.0	
chr8	82424796	82424888	reg1010958.p1	4.347	+	AB590738 BT006809 CR456903 J02874 TSC_hg19_v1_chr8_-_82395472 BC003672 NM_001442	-29404	-	AB528797 NM_001080526	-51085	-	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	-65173	-	NM_001105281 EU733650 BC146973 BC146981	18738	-	AK300750 TSC_hg19_v1_chr8_-_82598565 AK312823 AK297078 BC008381 BC009565 AF042729 NM_001144878 NM_001144879 NM_005536	173710	-	AY825924 NM_001010893 BC136625 BC136631	182404	-	BT006809|FABP4|2167|fatty acid binding protein 4, adipocyte##CR456903|FABP4|2167|fatty acid binding protein 4, adipocyte##J02874|FABP4|2167|fatty acid binding protein 4, adipocyte##BC003672|FABP4|2167|fatty acid binding protein 4, adipocyte##NM_001442|FABP4|2167|fatty acid binding protein 4, adipocyte##NM_001080526|FABP9|646480|fatty acid binding protein 9, testis##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2##NM_001105281|FABP12|646486|fatty acid binding protein 12##EU733650|FABP12|646486|fatty acid binding protein 12##BC146973|FABP12|646486|fatty acid binding protein 12##BC146981|FABP12|646486|fatty acid binding protein 12##AK300750|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AK312823|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AK297078|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##BC008381|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##BC009565|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AF042729|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##NM_001144878|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##NM_001144879|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##NM_005536|IMPA1|3612|inositol(myo)-1(or 4)-monophosphatase 1##AY825924|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##NM_001010893|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##BC136625|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5##BC136631|SLC10A5|347051|solute carrier family 10 (sodium/bile acid cotransporter family), member 5	0.012038	0.427427	CTCF.p2:11:0.427
chr11	108096125	108096274	reg1015201.p2	4.346	+	TSC_hg19_v1_chr11_+_108093793 AB209133 U33841	-2402	+	NM_000051	-2641	+	D83243 BC050561 TSC_hg19_v1_chr11_-_108093366 BC040356 BC094769 AK290020 NM_002519	-2827	-	BC059411 BC029536 AK303096 NM_152587	242043	-	TSC_hg19_v1_chr11_-_108369112 AK313534 AF533708 BC036526 NM_153705	272996	-	BC113119 BC117701 TSC_hg19_v1_chr11_-_108464372 AY099469 NM_015065 AB014524	368205	-	AB209133|ATM|472|ataxia telangiectasia mutated##U33841|ATM|472|ataxia telangiectasia mutated##NM_000051|ATM|472|ataxia telangiectasia mutated##D83243|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC050561|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC040356|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC094769|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##AK290020|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##NM_002519|NPAT|4863|nuclear protein, ataxia-telangiectasia locus##BC029536|C11orf65|160140|chromosome 11 open reading frame 65##AK303096|C11orf65|160140|chromosome 11 open reading frame 65##NM_152587|C11orf65|160140|chromosome 11 open reading frame 65##AK313534|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##AF533708|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC036526|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##NM_153705|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC113119|EXPH5|23086|exophilin 5##BC117701|EXPH5|23086|exophilin 5##AY099469|EXPH5|23086|exophilin 5##NM_015065|EXPH5|23086|exophilin 5##AB014524|EXPH5|23086|exophilin 5	0.951234	0.0	denovo_WM_7:0:0.742
chr12	57094348	57094444	reg1009065.p1	4.346	+	TSC_hg19_v1_chr12_-_57082069 AK298147 NM_006601 AK293139	-12289	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	-12395	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	-12456	-	TSC_hg19_v1_chr12_-_57118269 AB463919 CR450295 AY034001	23888	-	BC105120 BC105122 TSC_hg19_v1_chr12_-_57119084 BC106041 AF054187 AY605660 AY911673 X80909 AK311904 AK096699 AK223085 AK293209	24646	-	TSC_hg19_v1_chr12_-_57119316 NM_001113202 NM_001113203	24922	-	AK298147|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##NM_006601|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK293139|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##CR450295|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY034001|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105120|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC105122|NACA|4666|nascent polypeptide-associated complex alpha subunit##BC106041|NACA|4666|nascent polypeptide-associated complex alpha subunit##AF054187|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY605660|NACA|4666|nascent polypeptide-associated complex alpha subunit##AY911673|NACA|4666|nascent polypeptide-associated complex alpha subunit##X80909|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK311904|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK096699|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK223085|NACA|4666|nascent polypeptide-associated complex alpha subunit##AK293209|NACA|4666|nascent polypeptide-associated complex alpha subunit##NM_001113202|NACA|4666|nascent polypeptide-associated complex alpha subunit##NM_001113203|NACA|4666|nascent polypeptide-associated complex alpha subunit	0.980487	0.0	denovo_WM_7:-34:0.327	denovo_WM_7:-35:0.327	denovo_WM_7:-36:0.327
chr14	69970582	69970680	reg1008643.p1	4.346	+	TSC_hg19_v1_chr14_+_69951404 AK126770 NM_001161498 BC146872	-19151	+	TSC_hg19_v1_chr14_+_69865419 BC047682	-105195	+	TSC_hg19_v1_chr14_+_69865408 NM_001252148 NM_001252150 NM_018375 AK222547 AK002136 AK311104	-105236	+	AK309302 NM_014734 TSC_hg19_v1_chr14_+_70078312 BC064697	107679	+	TSC_hg19_v1_chr14_+_70078414 AK311470 D87434	107760	+	TSC_hg19_v1_chr14_+_70233809 BX640605	263175	+	AK126770|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##NM_001161498|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC146872|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC047682|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252148|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252150|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_018375|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK222547|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK002136|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK309302|KIAA0247|9766|KIAA0247##NM_014734|KIAA0247|9766|KIAA0247##BC064697|KIAA0247|9766|KIAA0247##D87434|KIAA0247|9766|KIAA0247##BX640605|SRSF5|6430|serine/arginine-rich splicing factor 5	0.997865	0.0	
chr19	13292586	13292740	reg1010949.p1	4.346	+	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-28483	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-31371	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-31524	-	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	324513	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	549916	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	566056	+	BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130	0.999036	0.0	
chr8	70743501	70743633	reg1012510.p1	4.346	+	AY101175 TSC_hg19_v1_chr8_+_70405081 AK055607 BX571746	-338478	+	NM_001128205 NM_001128206 TSC_hg19_v1_chr8_+_70405045	-338528	+	TSC_hg19_v1_chr8_+_70379077 AK307951	-364487	+	BC137424 BC144618 NM_001146009	1836	-	AK022760 NM_001146008	2057	-	AK308488 AF205075 AK096879 NM_030958	3682	-	AY101175|SULF1|23213|sulfatase 1##AK055607|SULF1|23213|sulfatase 1##BX571746|SULF1|23213|sulfatase 1##NM_001128205|SULF1|23213|sulfatase 1##NM_001128206|SULF1|23213|sulfatase 1##AK307951|SULF1|23213|sulfatase 1##BC137424|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC144618|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146009|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK022760|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146008|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1	0.979751	0.0	denovo_WM_7:-58:0.394
chr8	84607846	84608026	reg1013756.p2	4.346	+	AL833763 BC033630 AK290903 NM_022133 NM_152836 NM_152837	-1853463	-	TSC_hg19_v1_chr8_+_82644710 BC014321 NM_152284 AK314873 AK000049 AY329086 AB120734	-1963177	+	TSC_hg19_v1_chr8_-_82633531 CR457323 BC051857 AK304111 BC056877 BC022251 AK024069 AK225195 NM_001170796 NM_001170797 NM_024699	-1974410	-	NM_001100392 NM_001100393 TSC_hg19_v1_chr8_+_85095454	487523	+	AK095560 TSC_hg19_v1_chr8_+_85095510 AK094543 AF495529 AF495530 NM_173848	487607	+	TSC_hg19_v1_chr8_+_85095702 AK095026	487799	+	AL833763|SNX16|64089|sorting nexin 16##BC033630|SNX16|64089|sorting nexin 16##AK290903|SNX16|64089|sorting nexin 16##NM_022133|SNX16|64089|sorting nexin 16##NM_152836|SNX16|64089|sorting nexin 16##NM_152837|SNX16|64089|sorting nexin 16##BC014321|CHMP4C|92421|charged multivesicular body protein 4C##NM_152284|CHMP4C|92421|charged multivesicular body protein 4C##AK314873|CHMP4C|92421|charged multivesicular body protein 4C##AK000049|CHMP4C|92421|charged multivesicular body protein 4C##AY329086|CHMP4C|92421|charged multivesicular body protein 4C##AB120734|CHMP4C|92421|charged multivesicular body protein 4C##CR457323|ZFAND1|79752|zinc finger, AN1-type domain 1##BC051857|ZFAND1|79752|zinc finger, AN1-type domain 1##AK304111|ZFAND1|79752|zinc finger, AN1-type domain 1##BC056877|ZFAND1|79752|zinc finger, AN1-type domain 1##BC022251|ZFAND1|79752|zinc finger, AN1-type domain 1##AK024069|ZFAND1|79752|zinc finger, AN1-type domain 1##AK225195|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001170796|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001170797|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_024699|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001100392|RALYL|138046|RALY RNA binding protein-like##NM_001100393|RALYL|138046|RALY RNA binding protein-like##AK095560|RALYL|138046|RALY RNA binding protein-like##AK094543|RALYL|138046|RALY RNA binding protein-like##AF495529|RALYL|138046|RALY RNA binding protein-like##AF495530|RALYL|138046|RALY RNA binding protein-like##NM_173848|RALYL|138046|RALY RNA binding protein-like##AK095026|RALYL|138046|RALY RNA binding protein-like	2.994105	0.0	denovo_WM_7:7:0.205	denovo_WM_7:-8:0.261	denovo_WM_7:8:0.208	denovo_WM_7:-9:0.362	denovo_WM_7:24:0.247	denovo_WM_7:25:0.345
chr12	9894582	9894761	reg1012996.p2	4.345	+	AF518873 BC093857 BC093859 NM_001253748 NM_001253750 NM_172004	-8795	-	BC063128 NM_001197318 NM_013269 AK310150 NM_001004419 AK310554 AK313554 BC019883 AF133299 AF285087 CU676474 FN813349 FN813350 FN813351 NM_001197317 NM_001197319	-72404	+	TSC_hg19_v1_chr12_+_9800760 AK096274	-93775	+	AY238518 CU675505 DQ893175 DQ896474 L07555 AK291869 AK303174 AK303383 BC007037 NM_001781 Z22576	18784	-	AF175206 AF175207 AF267244 AF267245 NM_016523 AJ305370 BC096734 BC098166 BC098257 BC098354	85425	+	X96719 AY142147 AB015628 BC005254 AK311232 TSC_hg19_v1_chr12_-_10021954 AK313916 AK307334	127287	-	AF518873|CLECL1|160365|C-type lectin-like 1##BC093857|CLECL1|160365|C-type lectin-like 1##BC093859|CLECL1|160365|C-type lectin-like 1##NM_001253748|CLECL1|160365|C-type lectin-like 1##NM_001253750|CLECL1|160365|C-type lectin-like 1##NM_172004|CLECL1|160365|C-type lectin-like 1##BC063128|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197318|CLEC2D|29121|C-type lectin domain family 2, member D##NM_013269|CLEC2D|29121|C-type lectin domain family 2, member D##AK310150|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001004419|CLEC2D|29121|C-type lectin domain family 2, member D##AK310554|CLEC2D|29121|C-type lectin domain family 2, member D##AK313554|CLEC2D|29121|C-type lectin domain family 2, member D##BC019883|CLEC2D|29121|C-type lectin domain family 2, member D##AF133299|CLEC2D|29121|C-type lectin domain family 2, member D##AF285087|CLEC2D|29121|C-type lectin domain family 2, member D##FN813349|CLEC2D|29121|C-type lectin domain family 2, member D##FN813350|CLEC2D|29121|C-type lectin domain family 2, member D##FN813351|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197317|CLEC2D|29121|C-type lectin domain family 2, member D##NM_001197319|CLEC2D|29121|C-type lectin domain family 2, member D##AK096274|LOC374443|374443|CLR pseudogene##AY238518|CD69|969|CD69 molecule##DQ893175|CD69|969|CD69 molecule##DQ896474|CD69|969|CD69 molecule##L07555|CD69|969|CD69 molecule##AK291869|CD69|969|CD69 molecule##AK303174|CD69|969|CD69 molecule##AK303383|CD69|969|CD69 molecule##BC007037|CD69|969|CD69 molecule##NM_001781|CD69|969|CD69 molecule##Z22576|CD69|969|CD69 molecule##AF175206|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AF175207|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AF267244|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AF267245|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##NM_016523|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##AJ305370|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC096734|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC098166|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC098257|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##BC098354|KLRF1|51348|killer cell lectin-like receptor subfamily F, member 1##X96719|CLEC2B|9976|C-type lectin domain family 2, member B##AY142147|CLEC2B|9976|C-type lectin domain family 2, member B##AB015628|CLEC2B|9976|C-type lectin domain family 2, member B##BC005254|CLEC2B|9976|C-type lectin domain family 2, member B##AK311232|CLEC2B|9976|C-type lectin domain family 2, member B##AK313916|CLEC2B|9976|C-type lectin domain family 2, member B##AK307334|CLEC2B|9976|C-type lectin domain family 2, member B	0.0	0.0	
chr16	2925051	2925167	reg1011134.p2	4.345	+	CU679465 AB010779 AF321182 BC009726 AY358396 NM_022119	-16972	-	NM_145252 AY359021 JN411265 BC009722 AB528168 AM392915 AM393869 EF067313 AK311810	-44871	+	BC074999 BC075000 TSC_hg19_v1_chr16_+_2867242 AY359034 AF058300 AB031329 AB031330	-57863	+	NM_001142499 NM_001142500 NM_138439 TSC_hg19_v1_chr16_+_2933215 BC014089	8147	+	TSC_hg19_v1_chr16_+_2961983 BC028572 NM_020912 NM_032296	36855	+	TSC_hg19_v1_chr16_+_2961994 AB046772	36888	+	AB010779|PRSS22|64063|protease, serine, 22##AF321182|PRSS22|64063|protease, serine, 22##BC009726|PRSS22|64063|protease, serine, 22##AY358396|PRSS22|64063|protease, serine, 22##NM_022119|PRSS22|64063|protease, serine, 22##NM_145252|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AY359021|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##JN411265|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC009722|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM392915|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AM393869|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##EF067313|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##AK311810|ZG16B|124220|zymogen granule protein 16 homolog B (rat)##BC074999|PRSS21|10942|protease, serine, 21 (testisin)##BC075000|PRSS21|10942|protease, serine, 21 (testisin)##AY359034|PRSS21|10942|protease, serine, 21 (testisin)##AF058300|PRSS21|10942|protease, serine, 21 (testisin)##AB031329|PRSS21|10942|protease, serine, 21 (testisin)##AB031330|PRSS21|10942|protease, serine, 21 (testisin)##NM_001142499|FLYWCH2|114984|FLYWCH family member 2##NM_001142500|FLYWCH2|114984|FLYWCH family member 2##NM_138439|FLYWCH2|114984|FLYWCH family member 2##BC014089|FLYWCH2|114984|FLYWCH family member 2##BC028572|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_020912|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_032296|FLYWCH1|84256|FLYWCH-type zinc finger 1##AB046772|FLYWCH1|84256|FLYWCH-type zinc finger 1	1.329758	0.838435	denovo_WM_7:56:0.312	denovo_WM_7:71:0.320	CTCF.p2:-77:0.838
chr16	29350832	29350991	reg1009846.p1	4.345	+	TSC_hg19_v1_chr16_+_29086310 BC042920 AK225670 AK298442 AK301253	-264606	+	AK307342 NM_001014987 NM_001014988 NM_014387 TSC_hg19_v1_chr16_+_28996403 AJ223280	-354513	+	BC011563 NM_001014989	-354765	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	114940	+	BC022832 NM_001031827 NM_001039182	115373	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	120315	+	AK225670|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK298442|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK301253|RRN3P2|653390|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2##AK307342|LAT|27040|linker for activation of T cells##NM_001014987|LAT|27040|linker for activation of T cells##NM_001014988|LAT|27040|linker for activation of T cells##NM_014387|LAT|27040|linker for activation of T cells##AJ223280|LAT|27040|linker for activation of T cells##BC011563|LAT|27040|linker for activation of T cells##NM_001014989|LAT|27040|linker for activation of T cells##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3	0.0	0.0	
chr20	30950772	30950935	reg1007310.p1	4.345	+	TSC_hg19_v1_chr20_+_30946787 AK122923	-4027	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	-4683	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	-85367	+	AB023195 TSC_hg19_v1_chr20_+_31017235	66358	+	TSC_hg19_v1_chr20_+_31037448 AL080086	86649	+	AK056286 TSC_hg19_v1_chr20_-_31071290 NM_080616	120412	-	AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##AB023195|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK056286|C20orf112|140688|chromosome 20 open reading frame 112##NM_080616|C20orf112|140688|chromosome 20 open reading frame 112	0.017956	0.0	
chr22	42320129	42320275	reg1000769.p1	4.345	+	NM_001207020	-9532	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-90931	+	TSC_hg19_v1_chr22_+_42229253 BC056158 U02031 BC051385 CT841522 AK299914	-91001	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	2597	-	EU035297 NM_001110215	16020	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	22921	-	NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC056158|SREBF2|6721|sterol regulatory element binding transcription factor 2##U02031|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051385|SREBF2|6721|sterol regulatory element binding transcription factor 2##CT841522|SREBF2|6721|sterol regulatory element binding transcription factor 2##AK299914|SREBF2|6721|sterol regulatory element binding transcription factor 2##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M	0.990439	0.0	denovo_WM_7:0:0.814
chr6	135415574	135415754	reg1001658.p1	4.345	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-39670	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-39776	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-144432	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	86784	+	TSC_hg19_v1_chr6_+_135502507 BC064955	86831	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	86922	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr7	8007788	8007854	reg1012884.p1	4.345	+	BC009868 NM_002947	-249584	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-327448	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-327734	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	612	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	293895	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	293970	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chrX	13779916	13780047	reg1013045.p1	4.345	+	TSC_hg19_v1_chrX_+_13752969 BC052809 BC096344 BC096345 BC099658 BC099659 BC092448 GU727634	-26936	+	AK225847 BC042830 TSC_hg19_v1_chrX_+_13752900	-27081	+	TSC_hg19_v1_chrX_+_13752866 NM_003611 AK290354 AK289677 BC012324 BC030787 BC062432 Y15164 Y16355	-27147	+	AM392527 AM392754 AM392867 AM392943 AM392957 AM392968 AM392974 AM393048 AM393215 AM393570 AM393576 AM393741 AM393770 AM393783 AM393822 AB528141 DQ891541 DQ894729 EU832134 EU832227 CU690388 BC008151 TSC_hg19_v1_chrX_-_13835171	55110	-	AK299675 BC047295 TSC_hg19_v1_chrX_-_13835202	55214	-	TSC_hg19_v1_chrX_-_13835213 AK095657	55241	-	BC052809|OFD1|8481|oral-facial-digital syndrome 1##BC096344|OFD1|8481|oral-facial-digital syndrome 1##BC096345|OFD1|8481|oral-facial-digital syndrome 1##BC099658|OFD1|8481|oral-facial-digital syndrome 1##BC099659|OFD1|8481|oral-facial-digital syndrome 1##BC092448|OFD1|8481|oral-facial-digital syndrome 1##GU727634|OFD1|8481|oral-facial-digital syndrome 1##AK225847|OFD1|8481|oral-facial-digital syndrome 1##BC042830|OFD1|8481|oral-facial-digital syndrome 1##NM_003611|OFD1|8481|oral-facial-digital syndrome 1##AK290354|OFD1|8481|oral-facial-digital syndrome 1##AK289677|OFD1|8481|oral-facial-digital syndrome 1##BC012324|OFD1|8481|oral-facial-digital syndrome 1##BC030787|OFD1|8481|oral-facial-digital syndrome 1##BC062432|OFD1|8481|oral-facial-digital syndrome 1##Y15164|OFD1|8481|oral-facial-digital syndrome 1##Y16355|OFD1|8481|oral-facial-digital syndrome 1##AM392527|GPM6B|2824|glycoprotein M6B##AM392754|GPM6B|2824|glycoprotein M6B##AM392867|GPM6B|2824|glycoprotein M6B##AM392943|GPM6B|2824|glycoprotein M6B##AM392957|GPM6B|2824|glycoprotein M6B##AM392968|GPM6B|2824|glycoprotein M6B##AM392974|GPM6B|2824|glycoprotein M6B##AM393048|GPM6B|2824|glycoprotein M6B##AM393215|GPM6B|2824|glycoprotein M6B##AM393570|GPM6B|2824|glycoprotein M6B##AM393576|GPM6B|2824|glycoprotein M6B##AM393741|GPM6B|2824|glycoprotein M6B##AM393770|GPM6B|2824|glycoprotein M6B##AM393783|GPM6B|2824|glycoprotein M6B##AM393822|GPM6B|2824|glycoprotein M6B##DQ891541|GPM6B|2824|glycoprotein M6B##DQ894729|GPM6B|2824|glycoprotein M6B##EU832134|GPM6B|2824|glycoprotein M6B##EU832227|GPM6B|2824|glycoprotein M6B##BC008151|GPM6B|2824|glycoprotein M6B##AK299675|GPM6B|2824|glycoprotein M6B##BC047295|GPM6B|2824|glycoprotein M6B##AK095657|GPM6B|2824|glycoprotein M6B	0.999457	0.163995	
chr12	14998340	14998473	reg1011926.p1	4.344	+	AY829433 AY829434 NM_021071 AK291662 TSC_hg19_v1_chr12_-_14996461	-1982	-	BC132752 BC132754 AK092637 AX747644 NM_001013698	-31303	-	BC038836 NM_175874 AK289942 AK056213 BC015546 BC029443	-41830	+	BT006733 CR450358 DQ892495 DQ895707 X07362 AY542304 M58549 BC070314 X53331 BC005272 AK310040 AK312029 BC093078 TSC_hg19_v1_chr12_-_15038794 NM_000900 NM_001190839	40382	-	CU688844 BC030218 AY358536 NM_152321 AK056677	93055	-	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	116142	-	AY829433|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AY829434|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##NM_021071|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AK291662|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##BC132752|C12orf69|440087|chromosome 12 open reading frame 69##BC132754|C12orf69|440087|chromosome 12 open reading frame 69##AK092637|C12orf69|440087|chromosome 12 open reading frame 69##NM_001013698|C12orf69|440087|chromosome 12 open reading frame 69##BC038836|C12orf60|144608|chromosome 12 open reading frame 60##NM_175874|C12orf60|144608|chromosome 12 open reading frame 60##AK289942|C12orf60|144608|chromosome 12 open reading frame 60##AK056213|C12orf60|144608|chromosome 12 open reading frame 60##BC015546|C12orf60|144608|chromosome 12 open reading frame 60##BC029443|C12orf60|144608|chromosome 12 open reading frame 60##BT006733|MGP|4256|matrix Gla protein##CR450358|MGP|4256|matrix Gla protein##DQ892495|MGP|4256|matrix Gla protein##DQ895707|MGP|4256|matrix Gla protein##X07362|MGP|4256|matrix Gla protein##AY542304|MGP|4256|matrix Gla protein##M58549|MGP|4256|matrix Gla protein##BC070314|MGP|4256|matrix Gla protein##X53331|MGP|4256|matrix Gla protein##BC005272|MGP|4256|matrix Gla protein##AK312029|MGP|4256|matrix Gla protein##BC093078|MGP|4256|matrix Gla protein##NM_000900|MGP|4256|matrix Gla protein##NM_001190839|MGP|4256|matrix Gla protein##BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta	0.0	0.846212	CTCF.p2:-7:0.846
chr16	67203764	67203899	reg1009523.p1	4.344	+	TSC_hg19_v1_chr16_+_67198690 AK225152 AK296210 AB463724 AB029348 D87673	-5135	+	TSC_hg19_v1_chr16_+_67198637 BC130383	-5189	+	AK293631 TSC_hg19_v1_chr16_+_67198611	-5234	+	NM_001185058 AK294145 AK092623 AX747633	596	+	NM_003946 NM_001185057 AF043244 TSC_hg19_v1_chr16_+_67207847 AK314899 BC012798 AF064600 AF064599	3998	+	TSC_hg19_v1_chr16_-_67217476 AK094787 AK096855 BC080183	13610	-	AK225152|HSF4|3299|heat shock transcription factor 4##AK296210|HSF4|3299|heat shock transcription factor 4##AB029348|HSF4|3299|heat shock transcription factor 4##D87673|HSF4|3299|heat shock transcription factor 4##BC130383|HSF4|3299|heat shock transcription factor 4##AK293631|HSF4|3299|heat shock transcription factor 4##NM_001185058|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK294145|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK092623|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##NM_003946|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##NM_001185057|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AF043244|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK314899|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##BC012798|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AF064600|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AF064599|NOL3|8996|nucleolar protein 3 (apoptosis repressor with CARD domain)##AK094787|KIAA0895L|653319|KIAA0895-like##AK096855|KIAA0895L|653319|KIAA0895-like##BC080183|KIAA0895L|653319|KIAA0895-like	0.976441	0.078268	denovo_WM_7:10:0.235	denovo_WM_7:11:0.273	denovo_WM_7:12:0.212
chr22	37442127	37442235	reg1012635.p2	4.344	+	TSC_hg19_v1_chr22_+_37415797 BC016737 AB208824	-26343	+	NM_001013436 NM_001130517 NM_021126 TSC_hg19_v1_chr22_+_37415789	-26436	+	D87292 TSC_hg19_v1_chr22_-_37415489 AK091874 BC010148 AK000862 AK223521 AK301300 NM_003312	-26700	-	TSC_hg19_v1_chr22_+_37447781 NM_024681 BC025403 BC031038 BC009961 AK022304	5598	+	AB587483 AJ319876 CU013044 CU013332 CU691658 AY055384 NM_153609 BC039082	57394	-	CR456446 TSC_hg19_v1_chr22_-_37505748	63497	-	BC016737|MPST|4357|mercaptopyruvate sulfurtransferase##AB208824|MPST|4357|mercaptopyruvate sulfurtransferase##NM_001013436|MPST|4357|mercaptopyruvate sulfurtransferase##NM_001130517|MPST|4357|mercaptopyruvate sulfurtransferase##NM_021126|MPST|4357|mercaptopyruvate sulfurtransferase##D87292|TST|7263|thiosulfate sulfurtransferase (rhodanese)##AK091874|TST|7263|thiosulfate sulfurtransferase (rhodanese)##BC010148|TST|7263|thiosulfate sulfurtransferase (rhodanese)##AK000862|TST|7263|thiosulfate sulfurtransferase (rhodanese)##AK223521|TST|7263|thiosulfate sulfurtransferase (rhodanese)##AK301300|TST|7263|thiosulfate sulfurtransferase (rhodanese)##NM_003312|TST|7263|thiosulfate sulfurtransferase (rhodanese)##NM_024681|KCTD17|79734|potassium channel tetramerisation domain containing 17##BC025403|KCTD17|79734|potassium channel tetramerisation domain containing 17##BC031038|KCTD17|79734|potassium channel tetramerisation domain containing 17##BC009961|KCTD17|79734|potassium channel tetramerisation domain containing 17##AK022304|KCTD17|79734|potassium channel tetramerisation domain containing 17##AJ319876|TMPRSS6|164656|transmembrane protease, serine 6##CU013044|TMPRSS6|164656|transmembrane protease, serine 6##CU013332|TMPRSS6|164656|transmembrane protease, serine 6##AY055384|TMPRSS6|164656|transmembrane protease, serine 6##NM_153609|TMPRSS6|164656|transmembrane protease, serine 6##BC039082|TMPRSS6|164656|transmembrane protease, serine 6##CR456446|TMPRSS6|164656|transmembrane protease, serine 6	0.790149	0.042767	denovo_WM_7:-40:0.658
chr6	139457715	139457824	reg1002201.p2	4.344	+	BC070068 AB033492 NM_016217 TSC_hg19_v1_chr6_+_139456250	-1513	+	TSC_hg19_v1_chr6_+_139349935 AK309402 AF116682 BC014953	-107851	+	NM_021243 AF161398 TSC_hg19_v1_chr6_+_139349850	-107932	+	TSC_hg19_v1_chr6_-_139613136 BX647633 AL834248 AL831988 AK314725 BX647477 BC115383 BC115384 AB085905 NM_153235	155391	-	NM_001168389 NM_001168388	237654	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	237992	-	BC070068|HECA|51696|headcase homolog (Drosophila)##AB033492|HECA|51696|headcase homolog (Drosophila)##NM_016217|HECA|51696|headcase homolog (Drosophila)##AF116682|C6orf115|58527|chromosome 6 open reading frame 115##BC014953|C6orf115|58527|chromosome 6 open reading frame 115##NM_021243|C6orf115|58527|chromosome 6 open reading frame 115##AF161398|C6orf115|58527|chromosome 6 open reading frame 115##BX647633|TXLNB|167838|taxilin beta##AL834248|TXLNB|167838|taxilin beta##AL831988|TXLNB|167838|taxilin beta##AK314725|TXLNB|167838|taxilin beta##BX647477|TXLNB|167838|taxilin beta##BC115383|TXLNB|167838|taxilin beta##BC115384|TXLNB|167838|taxilin beta##AB085905|TXLNB|167838|taxilin beta##NM_153235|TXLNB|167838|taxilin beta##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	0.992572	0.0	denovo_WM_7:13:0.517	denovo_WM_7:14:0.334
chr7	148198887	148199016	reg1015630.p1	4.344	+	TSC_hg19_v1_chr7_+_148036552 CR933671	-162386	+	AF319045 AK315113 TSC_hg19_v1_chr7_+_145813941	-2385067	+	NM_014141	-2385499	+	BC021251 NM_145304	88705	+	TSC_hg19_v1_chr7_+_148395994 NM_003592 AK096163 AK296909	196989	+	TSC_hg19_v1_chr7_+_148396012 BX537409	197053	+	CR933671|CNTNAP2|26047|contactin associated protein-like 2##AF319045|CNTNAP2|26047|contactin associated protein-like 2##AK315113|CNTNAP2|26047|contactin associated protein-like 2##NM_014141|CNTNAP2|26047|contactin associated protein-like 2##BC021251|C7orf33|202865|chromosome 7 open reading frame 33##NM_145304|C7orf33|202865|chromosome 7 open reading frame 33##NM_003592|CUL1|8454|cullin 1##AK096163|CUL1|8454|cullin 1##AK296909|CUL1|8454|cullin 1##BX537409|CUL1|8454|cullin 1	0.0	0.0	
chr10	52212488	52212661	reg1015345.p1	4.343	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-204234	-	NM_018232	-374689	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-384852	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	171129	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	287136	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	432819	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.0	0.0	
chr14	103274845	103275025	reg1010182.p3	4.343	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-31035	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-31116	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-215774	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	114063	+	TSC_hg19_v1_chr14_-_103430941 BX248752	156023	-	AB384568 TSC_hg19_v1_chr14_-_103523568	248606	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	0.99417	0.0	denovo_WM_7:-77:0.779
chr21	44400455	44400602	reg1011312.p1	4.343	+	TSC_hg19_v1_chr21_+_44394747 Y13613 AK294794 AK222892 U68727	-5789	+	TSC_hg19_v1_chr21_+_44394671 AY142115 AY196965 NM_004571 BC000735	-5874	+	TSC_hg19_v1_chr21_+_44313422 NM_001001503 NM_021075 BC054016 BC021217 AK308228 AK289586 BC033766 CU676876 CU689730 CR542174 CR542190	-87127	+	TSC_hg19_v1_chr21_-_44495940 BC000440 X82166 BC011381 AK313691 L14577 BC010242 NM_000071	95438	-	L19501 BC007257 NM_001178008 NM_001178009	95919	-	AB451244 AB528900 TSC_hg19_v1_chr21_-_44527638 BC001177 BC001923 AJ627978 AL832665 BC005915 M96982 AK307560	127097	-	Y13613|PKNOX1|5316|PBX/knotted 1 homeobox 1##AK294794|PKNOX1|5316|PBX/knotted 1 homeobox 1##AK222892|PKNOX1|5316|PBX/knotted 1 homeobox 1##U68727|PKNOX1|5316|PBX/knotted 1 homeobox 1##AY142115|PKNOX1|5316|PBX/knotted 1 homeobox 1##AY196965|PKNOX1|5316|PBX/knotted 1 homeobox 1##NM_004571|PKNOX1|5316|PBX/knotted 1 homeobox 1##BC000735|PKNOX1|5316|PBX/knotted 1 homeobox 1##NM_001001503|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##NM_021075|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC054016|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC021217|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##AK308228|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##AK289586|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC033766|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##CR542174|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##CR542190|NDUFV3|4731|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa##BC000440|CBS|875|cystathionine-beta-synthase##X82166|CBS|875|cystathionine-beta-synthase##BC011381|CBS|875|cystathionine-beta-synthase##AK313691|CBS|875|cystathionine-beta-synthase##L14577|CBS|875|cystathionine-beta-synthase##BC010242|CBS|875|cystathionine-beta-synthase##NM_000071|CBS|875|cystathionine-beta-synthase##L19501|CBS|875|cystathionine-beta-synthase##BC007257|CBS|875|cystathionine-beta-synthase##NM_001178008|CBS|875|cystathionine-beta-synthase##NM_001178009|CBS|875|cystathionine-beta-synthase##AB451244|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001177|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001923|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AJ627978|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AL832665|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC005915|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##M96982|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AK307560|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1	0.867203	0.0	denovo_WM_7:-33:0.302	denovo_WM_7:-35:0.391
chr5	145806783	145806933	reg1012304.p2	4.343	+	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	-88228	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	-223692	+	AK128738 TSC_hg19_v1_chr5_+_145583122	-223741	+	TSC_hg19_v1_chr5_+_145826895 NM_001040006 NM_006706 AK304319 BC006109 BC014151 BC062351 AK126455 BC111727 AB209910 AB464301 AF017789	20036	+	AB463658 AY351676 NM_194251 AK122627	88855	-	CU689232 DQ891785 DQ894969 TSC_hg19_v1_chr5_-_146257712	450816	-	BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3##BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##AK128738|RBM27|54439|RNA binding motif protein 27##NM_001040006|TCERG1|10915|transcription elongation regulator 1##NM_006706|TCERG1|10915|transcription elongation regulator 1##AK304319|TCERG1|10915|transcription elongation regulator 1##BC006109|TCERG1|10915|transcription elongation regulator 1##BC014151|TCERG1|10915|transcription elongation regulator 1##BC062351|TCERG1|10915|transcription elongation regulator 1##AK126455|TCERG1|10915|transcription elongation regulator 1##BC111727|TCERG1|10915|transcription elongation regulator 1##AB209910|TCERG1|10915|transcription elongation regulator 1##AF017789|TCERG1|10915|transcription elongation regulator 1##AY351676|GPR151|134391|G protein-coupled receptor 151##NM_194251|GPR151|134391|G protein-coupled receptor 151##DQ891785|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##DQ894969|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta	0.0	0.940675	CTCF.p2:54:0.941
chr6	109800121	109800250	reg1014462.p1	4.343	+	TSC_hg19_v1_chr6_-_109777182 AB048948 NM_001159291 NM_022765	-23005	-	BC042144 TSC_hg19_v1_chr6_-_109777095	-23095	-	AK225049 TSC_hg19_v1_chr6_-_109776948 AK025392	-23234	-	TSC_hg19_v1_chr6_-_109804420 AK309697 BC036731	4187	-	TSC_hg19_v1_chr6_-_109804443 AB007901 NM_001164313 NM_014797	4274	-	TSC_hg19_v1_chr6_-_110012389 AK092103 AX747355 AK315561 AK055538 AL832162 NM_001145128 NM_145025 BC022031	212198	-	AB048948|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##NM_001159291|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##NM_022765|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##BC042144|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##AK225049|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##AK025392|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##AK309697|ZBTB24|9841|zinc finger and BTB domain containing 24##BC036731|ZBTB24|9841|zinc finger and BTB domain containing 24##AB007901|ZBTB24|9841|zinc finger and BTB domain containing 24##NM_001164313|ZBTB24|9841|zinc finger and BTB domain containing 24##NM_014797|ZBTB24|9841|zinc finger and BTB domain containing 24##AK315561|AKD1|221264|adenylate kinase domain containing 1##AK055538|AKD1|221264|adenylate kinase domain containing 1##AL832162|AKD1|221264|adenylate kinase domain containing 1##NM_001145128|AKD1|221264|adenylate kinase domain containing 1##NM_145025|AKD1|221264|adenylate kinase domain containing 1##BC022031|AKD1|221264|adenylate kinase domain containing 1	0.0	0.0	
chr7	81400056	81400234	reg1011598.p1	4.343	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-771	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-851471	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-851711	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	672701	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	672935	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	1391724	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	1.995044	0.0	denovo_WM_7:-3:0.575	denovo_WM_7:-4:0.312	denovo_WM_7:-18:0.283	denovo_WM_7:-19:0.546
chr9	5005146	5005295	reg1007497.p2	4.343	+	TSC_hg19_v1_chr9_+_4985271 AF005216 NM_004972 AF058925	-19961	+	TSC_hg19_v1_chr9_+_4985085 AK292525	-20133	+	TSC_hg19_v1_chr9_+_4839769 EF553527	-165452	+	AF135824 HQ258002 AF156094 NM_007179 BC126473 BC126475	180393	-	BC026254 AK291543 L34838 NM_002195 CU693182	226242	+	HQ258745 NM_005059 NM_134441 X00948 BC126415 BC126419	299374	-	AF005216|JAK2|3717|Janus kinase 2##NM_004972|JAK2|3717|Janus kinase 2##AF058925|JAK2|3717|Janus kinase 2##AK292525|JAK2|3717|Janus kinase 2##EF553527|RCL1|10171|RNA terminal phosphate cyclase-like 1##AF135824|INSL6|11172|insulin-like 6##HQ258002|INSL6|11172|insulin-like 6##AF156094|INSL6|11172|insulin-like 6##NM_007179|INSL6|11172|insulin-like 6##BC126473|INSL6|11172|insulin-like 6##BC126475|INSL6|11172|insulin-like 6##BC026254|INSL4|3641|insulin-like 4 (placenta)##AK291543|INSL4|3641|insulin-like 4 (placenta)##L34838|INSL4|3641|insulin-like 4 (placenta)##NM_002195|INSL4|3641|insulin-like 4 (placenta)##HQ258745|RLN2|6019|relaxin 2##NM_005059|RLN2|6019|relaxin 2##NM_134441|RLN2|6019|relaxin 2##X00948|RLN2|6019|relaxin 2##BC126415|RLN2|6019|relaxin 2##BC126419|RLN2|6019|relaxin 2	0.999379	0.0	denovo_WM_7:-94:0.388	denovo_WM_7:-95:0.259
chr11	66888318	66888454	reg1011561.p1	4.342	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	-1647	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	-64046	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	-64100	+	AK096194 TSC_hg19_v1_chr11_+_67007484	119098	+	TSC_hg19_v1_chr11_+_67007558 AB490246 AK299725	119197	+	TSC_hg19_v1_chr11_+_67033926 NM_001619	145522	+	BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A##BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##NM_014578|RHOD|29984|ras homolog gene family, member D##AK096194|LOC100131150|100131150|uncharacterized LOC100131150##AB490246|KDM2A|22992|lysine (K)-specific demethylase 2A##AK299725|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_001619|ADRBK1|156|adrenergic, beta, receptor kinase 1	0.997626	0.0	denovo_WM_7:5:0.998
chr19	7006847	7007003	reg1011866.p2	4.342	+	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	-119328	+	TSC_hg19_v1_chr19_+_6772811 AB590871	-234117	+	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	-234201	+	NM_001136507	23668	+	NM_001164419	33258	-	AF503919 NM_144614	42424	+	BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##NM_001136507|MBD3L5|284428|methyl-CpG binding domain protein 3-like 5##NM_001164419|MBD3L4|653656|methyl-CpG binding domain protein 3-like 4##AF503919|MBD3L2|125997|methyl-CpG binding domain protein 3-like 2##NM_144614|MBD3L2|125997|methyl-CpG binding domain protein 3-like 2	0.27595	0.0	
chr2	43002720	43002900	reg1003109.p2	4.342	+	AY158687 AB528920 AB083055 BC063549 NM_148962	-11510	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-206913	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-207089	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	16941	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	450535	-	TSC_hg19_v1_chr2_-_43453736 BC020369	450920	-	AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	1.853736	0.0	denovo_WM_7:-72:0.987	denovo_WM_7:-100:0.763
chr3	184382414	184382480	reg1014471.p2	4.342	+	TSC_hg19_v1_chr3_+_184279572 NM_004443 BC052968	-102865	+	AF209928 AF209929 AF209930 AF283325 NM_003741 AY358926 BC112345 AB208947 AK074147 AK293456 AK295632	-284407	+	BC130322 BC136338 BC143982 L33410 NM_000460 NM_001177597 NM_001177598 TSC_hg19_v1_chr3_-_184095936	-286509	-	AB590456 CU679591 AF320910 TSC_hg19_v1_chr3_-_184429853 AF295378 BC010056 NM_022149	47316	-	TSC_hg19_v1_chr3_+_184529961 NM_001009921 NM_015303 AK056661 AK292423 BX647915	147476	+	TSC_hg19_v1_chr3_+_184529983 BC140768	147548	+	NM_004443|EPHB3|2049|EPH receptor B3##BC052968|EPHB3|2049|EPH receptor B3##AF209928|CHRD|8646|chordin##AF209929|CHRD|8646|chordin##AF209930|CHRD|8646|chordin##AF283325|CHRD|8646|chordin##NM_003741|CHRD|8646|chordin##AY358926|CHRD|8646|chordin##BC112345|CHRD|8646|chordin##AB208947|CHRD|8646|chordin##AK074147|CHRD|8646|chordin##AK293456|CHRD|8646|chordin##AK295632|CHRD|8646|chordin##BC130322|THPO|7066|thrombopoietin##BC136338|THPO|7066|thrombopoietin##BC143982|THPO|7066|thrombopoietin##L33410|THPO|7066|thrombopoietin##NM_000460|THPO|7066|thrombopoietin##NM_001177597|THPO|7066|thrombopoietin##NM_001177598|THPO|7066|thrombopoietin##AF320910|MAGEF1|64110|melanoma antigen family F, 1##AF295378|MAGEF1|64110|melanoma antigen family F, 1##BC010056|MAGEF1|64110|melanoma antigen family F, 1##NM_022149|MAGEF1|64110|melanoma antigen family F, 1##NM_001009921|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##NM_015303|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK056661|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK292423|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BX647915|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC140768|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)	0.995501	0.0	
chr4	87948873	87949036	reg1012948.p2	4.342	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-20633	+	TSC_hg19_v1_chr4_+_87857481 L13743	-91471	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-92739	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	19297	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	192708	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	295071	-	L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13	0.998474	0.0	
chrX	148959238	148959418	reg1004583.p2	4.342	+	AK292272 AK313321 NM_001080790 BC002351 NM_005365	-95733	+	NM_001164415 NM_016153	-103603	+	NM_005366 AY747607 BC004479	-165559	+	AK313943 NM_001166400 NM_001166401 NM_005364 BC002455 BC012744	50642	+	L43575 TSC_hg19_v1_chrX_-_149106661 U66042 NM_001013845	147354	-	TSC_hg19_v1_chrX_+_149529838 AK302612	570505	+	AK292272|MAGEA9|4108|melanoma antigen family A, 9##AK313321|MAGEA9|4108|melanoma antigen family A, 9##NM_001080790|MAGEA9B|728269|melanoma antigen family A, 9B##BC002351|MAGEA9|4108|melanoma antigen family A, 9##NM_005365|MAGEA9|4108|melanoma antigen family A, 9##NM_001164415|HSFX2|100130086|heat shock transcription factor family, X linked 2##NM_016153|HSFX1|100506164|heat shock transcription factor family, X linked 1##NM_005366|MAGEA11|4110|melanoma antigen family A, 11##AY747607|MAGEA11|4110|melanoma antigen family A, 11##BC004479|MAGEA11|4110|melanoma antigen family A, 11##AK313943|MAGEA8|4107|melanoma antigen family A, 8##NM_001166400|MAGEA8|4107|melanoma antigen family A, 8##NM_001166401|MAGEA8|4107|melanoma antigen family A, 8##NM_005364|MAGEA8|4107|melanoma antigen family A, 8##BC002455|MAGEA8|4107|melanoma antigen family A, 8##BC012744|MAGEA8|4107|melanoma antigen family A, 8##L43575|CXorf40B|541578|chromosome X open reading frame 40B##U66042|CXorf40B|541578|chromosome X open reading frame 40B##NM_001013845|CXorf40B|541578|chromosome X open reading frame 40B##AK302612|MAMLD1|10046|mastermind-like domain containing 1	0.696452	0.0	denovo_WM_7:67:0.603
chrX	3729786	3729966	reg1003536.p1	4.342	+	TSC_hg19_v1_chrX_-_3631668 NM_005044	-98158	-	TSC_hg19_v1_chrX_-_3631645 X85545	-98231	-	TSC_hg19_v1_chrX_-_3631619 BC041073	-98334	-	AB033086 AF376803 AX773938 NM_020742	2416011	-	AK055471 BC034018 NM_181332	2416804	-	AF167078 AF167079 NM_016379	2723282	-	NM_005044|PRKX|5613|protein kinase, X-linked##X85545|PRKX|5613|protein kinase, X-linked##BC041073|PRKX|5613|protein kinase, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A	0.045937	0.0	
chr1	17574651	17574762	reg1012496.p1	4.341	+	AK314644 AK026652 AK225541 NM_013358 AB033768 BC130574 BC136402 HQ258487	-43041	+	AB587350 AB023211 AB030176 BC009701 TSC_hg19_v1_chr1_-_17445947 AK295783 NM_007365	-128799	-	DQ403007 TSC_hg19_v1_chr1_-_17380528 AK312056 U17248 BC007840 NM_003000	-194131	-	AB026831 NM_016233 BC109091 BC041592 BC109092	893	+	AF229067 AK314839 NM_012387 AB017919 AK290507 AK309637 BC025718 AB527709 CU693030	59997	+	AY443100 AB527380 AY422079 NM_207421	124009	+	AK314644|PADI1|29943|peptidyl arginine deiminase, type I##AK026652|PADI1|29943|peptidyl arginine deiminase, type I##AK225541|PADI1|29943|peptidyl arginine deiminase, type I##NM_013358|PADI1|29943|peptidyl arginine deiminase, type I##AB033768|PADI1|29943|peptidyl arginine deiminase, type I##BC130574|PADI1|29943|peptidyl arginine deiminase, type I##BC136402|PADI1|29943|peptidyl arginine deiminase, type I##HQ258487|PADI1|29943|peptidyl arginine deiminase, type I##AB023211|PADI2|11240|peptidyl arginine deiminase, type II##AB030176|PADI2|11240|peptidyl arginine deiminase, type II##BC009701|PADI2|11240|peptidyl arginine deiminase, type II##AK295783|PADI2|11240|peptidyl arginine deiminase, type II##NM_007365|PADI2|11240|peptidyl arginine deiminase, type II##DQ403007|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AK312056|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##U17248|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##BC007840|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##NM_003000|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III##AF229067|PADI4|23569|peptidyl arginine deiminase, type IV##AK314839|PADI4|23569|peptidyl arginine deiminase, type IV##NM_012387|PADI4|23569|peptidyl arginine deiminase, type IV##AB017919|PADI4|23569|peptidyl arginine deiminase, type IV##AK290507|PADI4|23569|peptidyl arginine deiminase, type IV##AK309637|PADI4|23569|peptidyl arginine deiminase, type IV##BC025718|PADI4|23569|peptidyl arginine deiminase, type IV##AY443100|PADI6|353238|peptidyl arginine deiminase, type VI##AY422079|PADI6|353238|peptidyl arginine deiminase, type VI##NM_207421|PADI6|353238|peptidyl arginine deiminase, type VI	1.067549	0.0	denovo_WM_7:-10:0.310	denovo_WM_7:-11:0.310	denovo_WM_7:-12:0.310
chr1	2320173	2320266	reg1014032.p2	4.341	+	NM_003036 X15218 TSC_hg19_v1_chr1_+_2160159	-160050	+	AK127994 NM_001146310	-181048	-	TSC_hg19_v1_chr1_-_2126212 BC041041 AF469129 BC066360 AK055593 BC103992 NM_182533	-194040	-	TSC_hg19_v1_chr1_-_2322994 AK024003 NM_024848	2773	-	TSC_hg19_v1_chr1_-_2322997 AK299217 AK310323 BC021704	2851	-	TSC_hg19_v1_chr1_+_2323265 NM_007033 AF157324	3016	+	NM_003036|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##X15218|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##AK127994|C1orf86|199990|chromosome 1 open reading frame 86##NM_001146310|C1orf86|199990|chromosome 1 open reading frame 86##BC041041|C1orf86|199990|chromosome 1 open reading frame 86##AF469129|C1orf86|199990|chromosome 1 open reading frame 86##BC066360|C1orf86|199990|chromosome 1 open reading frame 86##AK055593|C1orf86|199990|chromosome 1 open reading frame 86##BC103992|C1orf86|199990|chromosome 1 open reading frame 86##NM_182533|C1orf86|199990|chromosome 1 open reading frame 86##AK024003|MORN1|79906|MORN repeat containing 1##NM_024848|MORN1|79906|MORN repeat containing 1##AK299217|MORN1|79906|MORN repeat containing 1##AK310323|MORN1|79906|MORN repeat containing 1##BC021704|MORN1|79906|MORN repeat containing 1##NM_007033|RER1|11079|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)##AF157324|RER1|11079|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	1.106238	0.0	
chr13	95933542	95933709	reg1006362.p2	4.341	+	X65666 X71136 AB464716 NM_007084	-569307	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-679523	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-685129	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	20087	-	NM_001160100 NM_182848 AK055855	152229	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	271349	+	X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10	1.106237	0.0	
chr20	32103581	32103687	reg1012377.p1	4.341	+	TSC_hg19_v1_chr20_+_32077922 NM_001032999 AF052211	-25663	+	TSC_hg19_v1_chr20_+_32077885 AK294168 AK307887	-25798	+	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	-72073	-	BC015066 NM_001039709 NM_005093 AF069747 AF052212	46543	+	DQ080434 NM_080825 BC032818	146481	+	NM_001024675 BC137111 BC137114	150679	+	NM_001032999|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052211|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK294168|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AK307887|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC015066|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_001039709|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##NM_005093|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF069747|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##AF052212|CBFA2T2|9139|core-binding factor, runt domain, alpha subunit 2; translocated to, 2##DQ080434|C20orf144|128864|chromosome 20 open reading frame 144##NM_080825|C20orf144|128864|chromosome 20 open reading frame 144##BC032818|C20orf144|128864|chromosome 20 open reading frame 144##NM_001024675|ACTL10|170487|actin-like 10##BC137111|ACTL10|170487|actin-like 10##BC137114|ACTL10|170487|actin-like 10	0.997014	0.086882	
chr21	44015167	44015266	reg1013312.p1	4.341	+	TSC_hg19_v1_chr21_+_43933984 BC042139 AF311320	-81213	+	AJ269529 NM_018964	-95475	+	HQ258144 AK314746 BC101519 BC113367 AK057315 AB041016 NM_080860 AB006536	-98836	-	TSC_hg19_v1_chr21_+_44073730 NM_001001567 NM_001001568 NM_001001569 NM_001001570 NM_001001571 NM_001001572 NM_001001573 NM_001001574 NM_001001575 NM_001001576 NM_001001577 NM_001001578 NM_001001579 NM_001001580 NM_001001581 NM_001001582 NM_001001583 NM_001001584 NM_001001585 NM_002606 AF048837 AY701187 BC009047 AK314679 AY196299 AY196300 AY196301 AY196302 AY196303 AY196304 AY196305 AY196306 AY196307 AY196308 AY196309 AY196310 AY196311 AY196312 AY196313 AY196314 AK001307 AK294112 AF067223 AF067224 AF067225 AF067226 AB527758 AY242121 BT007016 GQ129331 GQ129332	58571	+	AB590172 CU675357 DQ892967 DQ896215 TSC_hg19_v1_chr21_-_44299643 AK292923 AK315008 AJ243912 AJ243913 BC006341	284408	-	TSC_hg19_v1_chr21_-_44299690 BC001074 NM_018669 NM_033661 AK298015	284468	-	BC042139|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##AF311320|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##AJ269529|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##NM_018964|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##HQ258144|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK314746|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC101519|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC113367|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK057315|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB041016|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##NM_080860|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB006536|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##NM_001001567|PDE9A|5152|phosphodiesterase 9A##NM_001001568|PDE9A|5152|phosphodiesterase 9A##NM_001001569|PDE9A|5152|phosphodiesterase 9A##NM_001001570|PDE9A|5152|phosphodiesterase 9A##NM_001001571|PDE9A|5152|phosphodiesterase 9A##NM_001001572|PDE9A|5152|phosphodiesterase 9A##NM_001001573|PDE9A|5152|phosphodiesterase 9A##NM_001001574|PDE9A|5152|phosphodiesterase 9A##NM_001001575|PDE9A|5152|phosphodiesterase 9A##NM_001001576|PDE9A|5152|phosphodiesterase 9A##NM_001001577|PDE9A|5152|phosphodiesterase 9A##NM_001001578|PDE9A|5152|phosphodiesterase 9A##NM_001001579|PDE9A|5152|phosphodiesterase 9A##NM_001001580|PDE9A|5152|phosphodiesterase 9A##NM_001001581|PDE9A|5152|phosphodiesterase 9A##NM_001001582|PDE9A|5152|phosphodiesterase 9A##NM_001001583|PDE9A|5152|phosphodiesterase 9A##NM_001001584|PDE9A|5152|phosphodiesterase 9A##NM_001001585|PDE9A|5152|phosphodiesterase 9A##NM_002606|PDE9A|5152|phosphodiesterase 9A##AF048837|PDE9A|5152|phosphodiesterase 9A##AY701187|PDE9A|5152|phosphodiesterase 9A##BC009047|PDE9A|5152|phosphodiesterase 9A##AK314679|PDE9A|5152|phosphodiesterase 9A##AY196299|PDE9A|5152|phosphodiesterase 9A##AY196300|PDE9A|5152|phosphodiesterase 9A##AY196301|PDE9A|5152|phosphodiesterase 9A##AY196302|PDE9A|5152|phosphodiesterase 9A##AY196303|PDE9A|5152|phosphodiesterase 9A##AY196304|PDE9A|5152|phosphodiesterase 9A##AY196305|PDE9A|5152|phosphodiesterase 9A##AY196306|PDE9A|5152|phosphodiesterase 9A##AY196307|PDE9A|5152|phosphodiesterase 9A##AY196308|PDE9A|5152|phosphodiesterase 9A##AY196309|PDE9A|5152|phosphodiesterase 9A##AY196310|PDE9A|5152|phosphodiesterase 9A##AY196311|PDE9A|5152|phosphodiesterase 9A##AY196312|PDE9A|5152|phosphodiesterase 9A##AY196313|PDE9A|5152|phosphodiesterase 9A##AY196314|PDE9A|5152|phosphodiesterase 9A##AK001307|PDE9A|5152|phosphodiesterase 9A##AK294112|PDE9A|5152|phosphodiesterase 9A##AF067223|PDE9A|5152|phosphodiesterase 9A##AF067224|PDE9A|5152|phosphodiesterase 9A##AF067225|PDE9A|5152|phosphodiesterase 9A##AF067226|PDE9A|5152|phosphodiesterase 9A##AY242121|PDE9A|5152|phosphodiesterase 9A##BT007016|PDE9A|5152|phosphodiesterase 9A##GQ129331|PDE9A|5152|phosphodiesterase 9A##GQ129332|PDE9A|5152|phosphodiesterase 9A##DQ892967|WDR4|10785|WD repeat domain 4##DQ896215|WDR4|10785|WD repeat domain 4##AK292923|WDR4|10785|WD repeat domain 4##AK315008|WDR4|10785|WD repeat domain 4##AJ243912|WDR4|10785|WD repeat domain 4##AJ243913|WDR4|10785|WD repeat domain 4##BC006341|WDR4|10785|WD repeat domain 4##BC001074|WDR4|10785|WD repeat domain 4##NM_018669|WDR4|10785|WD repeat domain 4##NM_033661|WDR4|10785|WD repeat domain 4##AK298015|WDR4|10785|WD repeat domain 4	0.08372	0.0	
chr2	224806559	224806635	reg1008791.p2	4.341	+	TSC_hg19_v1_chr2_-_224702300 BC009606 NM_001039569	-104287	-	AF393369 BC021898 TSC_hg19_v1_chr2_-_224702284 AK025338 AK299026	-104348	-	TSC_hg19_v1_chr2_-_224467145 NM_003469	-339418	-	TSC_hg19_v1_chr2_-_224810010 AF411977 AB527455 CU691898	3396	-	BC040525 AB037856 TSC_hg19_v1_chr2_-_224810016	3418	-	TSC_hg19_v1_chr2_-_224810020 AK023415 AK022888	3427	-	BC009606|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_001039569|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AF393369|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC021898|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK025338|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK299026|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_003469|SCG2|7857|secretogranin II##AF411977|WDFY1|57590|WD repeat and FYVE domain containing 1##BC040525|WDFY1|57590|WD repeat and FYVE domain containing 1##AB037856|WDFY1|57590|WD repeat and FYVE domain containing 1##AK023415|WDFY1|57590|WD repeat and FYVE domain containing 1##AK022888|WDFY1|57590|WD repeat and FYVE domain containing 1	0.0	0.0	
chr2	71668045	71668157	reg1007253.p1	4.341	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	-109204	+	TSC_hg19_v1_chr2_+_71503722 AK303723 AK309221 AK293938	-164375	+	TSC_hg19_v1_chr2_-_71454205 AB032981 NM_020459	-213871	-	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	12700	+	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	25792	+	AK295683 TSC_hg19_v1_chr2_-_72371202	703098	-	NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##AK303723|ZNF638|27332|zinc finger protein 638##AK309221|ZNF638|27332|zinc finger protein 638##AK293938|ZNF638|27332|zinc finger protein 638##AB032981|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_020459|PAIP2B|400961|poly(A) binding protein interacting protein 2B##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1	1.86414	0.0	denovo_WM_7:-65:0.591	denovo_WM_7:-83:0.356	denovo_WM_7:-84:0.256	denovo_WM_7:-85:0.263
chr3	32542660	32542840	reg1009918.p2	4.341	+	TSC_hg19_v1_chr3_+_32433370 BC010116 AY174113 DQ132881 AK308878	-109347	+	TSC_hg19_v1_chr3_+_32433162 AF479263 NM_138410 NM_181472 AL832450	-109581	+	TSC_hg19_v1_chr3_+_32280215 BC041390	-262531	+	CR457231 TSC_hg19_v1_chr3_-_32544290	1522	-	TSC_hg19_v1_chr3_-_32544335 AK000403	1583	-	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	1630	-	BC010116|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AY174113|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##DQ132881|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AK308878|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AF479263|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_138410|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##NM_181472|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##AL832450|CMTM7|112616|CKLF-like MARVEL transmembrane domain containing 7##BC041390|CMTM8|152189|CKLF-like MARVEL transmembrane domain containing 8##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6	0.999365	0.0	
chr7	76667040	76667184	reg1012816.p1	4.341	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-410565	-	TSC_hg19_v1_chr7_-_76256148 BC017101	-410909	-	TSC_hg19_v1_chr7_+_76178675 BC078169	-488437	+	BC036053 NM_020879 BX649000 AK292491 HM370402	84834	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	162024	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	378606	-	BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC017101|POMZP3|22932|POM121 and ZP3 fusion##BC078169|LOC100133091|100133091|uncharacterized LOC100133091##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)	0.989008	0.0	denovo_WM_7:-23:0.918
chr11	87907794	87907958	reg1015049.p1	4.340	+	AK024853 TSC_hg19_v1_chr11_+_87032449	-875434	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-1158898	+	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	-1241488	-	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	716	-	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	162991	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	163026	-	AK024853|TMEM135|65084|transmembrane protein 135##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C	1.473415	0.0	denovo_WM_7:-62:0.429	denovo_WM_7:-77:0.213	denovo_WM_7:-78:0.234	denovo_WM_7:-79:0.254
chr1	224423585	224423724	reg1009692.p1	4.340	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	-52667	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	-52732	+	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	-121844	+	TSC_hg19_v1_chr1_-_224517875 BC012105 AK298244 AK297396 AK298826 AK293923 AK297070 BC005897 U78772 U68140 NM_001243146 NM_001243147 NM_002533 NM_206840	94198	-	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	120915	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	120938	+	AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC012105|NVL|4931|nuclear VCP-like##AK298244|NVL|4931|nuclear VCP-like##AK297396|NVL|4931|nuclear VCP-like##AK298826|NVL|4931|nuclear VCP-like##AK293923|NVL|4931|nuclear VCP-like##AK297070|NVL|4931|nuclear VCP-like##BC005897|NVL|4931|nuclear VCP-like##U78772|NVL|4931|nuclear VCP-like##U68140|NVL|4931|nuclear VCP-like##NM_001243146|NVL|4931|nuclear VCP-like##NM_001243147|NVL|4931|nuclear VCP-like##NM_002533|NVL|4931|nuclear VCP-like##NM_206840|NVL|4931|nuclear VCP-like##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)	1.92158	0.0	denovo_WM_7:5:0.924	denovo_WM_7:-9:0.853
chr1	54953782	54953962	reg1000693.p1	4.340	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-81788	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	-81850	-	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	-82084	-	TSC_hg19_v1_chr1_+_55007956 AK091112	54089	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	60022	+	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	135276	-	NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A	0.0	0.0	
chr17	17532133	17532313	reg1012908.p2	4.340	+	TSC_hg19_v1_chr17_-_17495007 CU690728 AF044214 AF113126 BC000557 BC050593 NM_148172 AK302251	-37248	-	AB029821 NM_007169 TSC_hg19_v1_chr17_-_17485751	-46476	-	AF176806 TSC_hg19_v1_chr17_-_17485724	-46516	-	TSC_hg19_v1_chr17_+_17584772 AB058723 AY172136 NM_030665	52562	+	TSC_hg19_v1_chr17_+_17608164 AF147359	75975	+	AB373959 TSC_hg19_v1_chr17_-_17726919 S66167 AK091131 AK293795 AK294800 AK297113	194681	-	AF044214|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AF113126|PEMT|10400|phosphatidylethanolamine N-methyltransferase##BC000557|PEMT|10400|phosphatidylethanolamine N-methyltransferase##BC050593|PEMT|10400|phosphatidylethanolamine N-methyltransferase##NM_148172|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AK302251|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AB029821|PEMT|10400|phosphatidylethanolamine N-methyltransferase##NM_007169|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AF176806|PEMT|10400|phosphatidylethanolamine N-methyltransferase##AB058723|RAI1|10743|retinoic acid induced 1##AY172136|RAI1|10743|retinoic acid induced 1##NM_030665|RAI1|10743|retinoic acid induced 1##AB373959|SREBF1|6720|sterol regulatory element binding transcription factor 1##S66167|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK091131|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK293795|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK294800|SREBF1|6720|sterol regulatory element binding transcription factor 1##AK297113|SREBF1|6720|sterol regulatory element binding transcription factor 1	0.0	0.0	
chr6	13278175	13278305	reg1012978.p1	4.340	+	AK290017 NM_001242648 NM_030948 TSC_hg19_v1_chr6_+_12717049	-561197	+	AK295263 TSC_hg19_v1_chr6_+_12716998	-561297	+	TSC_hg19_v1_chr6_+_12514301 D28417	-763938	+	AK091836 AX747210 NM_001242698	17577	-	AF151073 AK223445 AY542308 AY826820 TSC_hg19_v1_chr6_-_13328771 BC050465 AK057228 AK296391 BC007054 AL833474 NM_001143964 NM_001143965 NM_001143966 NM_016495	50460	-	AK027010 NM_001242630	130128	-	AK290017|PHACTR1|221692|phosphatase and actin regulator 1##NM_001242648|PHACTR1|221692|phosphatase and actin regulator 1##NM_030948|PHACTR1|221692|phosphatase and actin regulator 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1##AK091836|LOC100130357|100130357|uncharacterized LOC100130357##NM_001242698|LOC100130357|100130357|uncharacterized LOC100130357##AF151073|TBC1D7|51256|TBC1 domain family, member 7##AK223445|TBC1D7|51256|TBC1 domain family, member 7##AY542308|TBC1D7|51256|TBC1 domain family, member 7##AY826820|TBC1D7|51256|TBC1 domain family, member 7##BC050465|TBC1D7|51256|TBC1 domain family, member 7##AK057228|TBC1D7|51256|TBC1 domain family, member 7##AK296391|TBC1D7|51256|TBC1 domain family, member 7##BC007054|TBC1D7|51256|TBC1 domain family, member 7##AL833474|TBC1D7|51256|TBC1 domain family, member 7##NM_001143964|TBC1D7|51256|TBC1 domain family, member 7##NM_001143965|TBC1D7|51256|TBC1 domain family, member 7##NM_001143966|TBC1D7|51256|TBC1 domain family, member 7##NM_016495|TBC1D7|51256|TBC1 domain family, member 7##AK027010|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1##NM_001242630|GFOD1|54438|glucose-fructose oxidoreductase domain containing 1	0.99243	0.0	denovo_WM_7:-51:0.496	denovo_WM_7:-52:0.496
chr12	90909790	90909879	reg1015178.p1	4.339	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-806289	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-807147	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-859983	-	BC026075 BC024183 BC027600 BC034491 NM_152638	439117	-	U59111 TSC_hg19_v1_chr12_-_91398750	488913	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	488945	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.753504	0.0	denovo_WM_7:-100:0.636
chr4	48141050	48141223	reg1011122.p2	4.339	+	BC017829 L27071 NM_003328	-4878	-	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-122333	+	X64802 TSC_hg19_v1_chr4_-_48018662	-122499	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	130699	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	202275	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	202477	+	BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2	0.0	0.0	
chr4	87926921	87926987	reg1010725.p2	4.339	+	TSC_hg19_v1_chr4_+_87857481 L13743	-69471	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-70739	+	BC016746 BC063410 NM_144645	-113394	-	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	1367	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	41297	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	214708	-	AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)	0.061875	0.0	
chr5	139488215	139488395	reg1009721.p1	4.339	+	U92987 TSC_hg19_v1_chr5_-_139422858 AB005060 AK124504 NM_001184935 NM_004883 NM_013981 NM_013982 NM_013983	-65460	-	BC103983 BC103984 BC114333 BC114334 TSC_hg19_v1_chr5_-_139422732	-65577	-	TSC_hg19_v1_chr5_+_139175392 AL136559 NM_032289 BC038233	-312899	+	TSC_hg19_v1_chr5_+_139493703 M96684 NM_005859 BC110574 BC110594 BC036087 AB464679 BT019388	5422	+	BC041380 NM_001007189	17214	+	TSC_hg19_v1_chr5_+_139554672 NM_032412	66349	+	U92987|NRG2|9542|neuregulin 2##AB005060|NRG2|9542|neuregulin 2##AK124504|NRG2|9542|neuregulin 2##NM_001184935|NRG2|9542|neuregulin 2##NM_004883|NRG2|9542|neuregulin 2##NM_013981|NRG2|9542|neuregulin 2##NM_013982|NRG2|9542|neuregulin 2##NM_013983|NRG2|9542|neuregulin 2##BC103983|NRG2|9542|neuregulin 2##BC103984|NRG2|9542|neuregulin 2##BC114333|NRG2|9542|neuregulin 2##BC114334|NRG2|9542|neuregulin 2##AL136559|PSD2|84249|pleckstrin and Sec7 domain containing 2##NM_032289|PSD2|84249|pleckstrin and Sec7 domain containing 2##BC038233|PSD2|84249|pleckstrin and Sec7 domain containing 2##M96684|PURA|5813|purine-rich element binding protein A##NM_005859|PURA|5813|purine-rich element binding protein A##BC110574|PURA|5813|purine-rich element binding protein A##BC110594|PURA|5813|purine-rich element binding protein A##BC036087|PURA|5813|purine-rich element binding protein A##BT019388|PURA|5813|purine-rich element binding protein A##BC041380|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_001007189|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_032412|C5orf32|84418|chromosome 5 open reading frame 32	1.263688	0.0	denovo_WM_7:10:0.218	denovo_WM_7:30:0.479	denovo_WM_7:31:0.479
chr6_qbl_hap6	4593409	4593507	reg1012410.p2	4.339	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.998839	0.0	
chr7	104960046	104960144	reg1001070.p1	4.339	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-50612	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-207717	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-278681	+	TSC_hg19_v1_chr7_-_105029265 AB489157	69170	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	69247	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	202566	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.0	0.0	
chr7	8008047	8008140	reg1012884.p2	4.339	+	BC009868 NM_002947	-249856	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-327720	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-328006	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	340	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	293623	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	293698	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chr10	67261127	67261263	reg1011661.p2	4.338	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-1979954	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-1980033	+	TSC_hg19_v1_chr10_+_65281112 BC068557 NM_001001330	-1980080	+	NM_178011 BX640611 AY358315 BC111492	1424620	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	2164201	-	AF091606 AK313882 NM_013266	2194742	-	BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##BC068557|REEP3|221035|receptor accessory protein 3##NM_001001330|REEP3|221035|receptor accessory protein 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	0.0	0.0	
chr17	63014115	63014242	reg1007729.p1	4.338	+	TSC_hg19_v1_chr17_-_63009302 AK026902	-4872	-	TSC_hg19_v1_chr17_-_62971685 BX537538 AK056627 BC063466 AK311317	-42558	-	TSC_hg19_v1_chr17_-_62915587 AK294371	-98582	-	TSC_hg19_v1_chr17_-_63052724 AB528470 AF493902 CU691408 DQ893572 DQ894448 AK313672	38540	-	TSC_hg19_v1_chr17_-_63052756 L22075 BC036756	38582	-	BC011925 TSC_hg19_v1_chr17_-_63052851	38655	-	AK026902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BX537538|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK056627|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##BC063466|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK311317|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AF493902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ893572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ894448|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AK313672|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##L22075|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC036756|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13	3.090005	0.0	denovo_WM_7:39:0.486	denovo_WM_7:40:0.260	denovo_WM_7:54:0.263	denovo_WM_7:55:0.338	denovo_WM_7:56:0.271	denovo_WM_7:70:0.245
chr3	4515607	4515787	reg1002610.p1	4.338	+	TSC_hg19_v1_chr3_-_4508955 NM_001164674 NM_001164675 NM_182760	-6734	-	AK295240 TSC_hg19_v1_chr3_-_4508953 BC121122 BC121123	-6745	-	TSC_hg19_v1_chr3_-_4508945 AY358092 AK075459	-6754	-	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	19334	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	19431	+	TSC_hg19_v1_chr3_+_4535164 BC144563	19499	+	NM_001164674|SUMF1|285362|sulfatase modifying factor 1##NM_001164675|SUMF1|285362|sulfatase modifying factor 1##NM_182760|SUMF1|285362|sulfatase modifying factor 1##AK295240|SUMF1|285362|sulfatase modifying factor 1##BC121122|SUMF1|285362|sulfatase modifying factor 1##BC121123|SUMF1|285362|sulfatase modifying factor 1##AY358092|SUMF1|285362|sulfatase modifying factor 1##AK075459|SUMF1|285362|sulfatase modifying factor 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1	0.99477	0.0	denovo_WM_7:-66:0.736
chrX	48327740	48327890	reg1012394.p1	4.338	+	BC005325 NM_001034832 NM_001040612 NM_005636 NM_175729	-56472	-	BC005325 NM_001034832 NM_001040612 NM_005636 NM_175729	-84848	+	U90840 AK310348 AK310513 BC005904 NM_021014 NM_175711 BC103862	-111673	-	TSC_hg19_v1_chrX_-_48327781 BC019246 AK094788	21	-	AF276889 TSC_hg19_v1_chrX_-_48328573	757	-	TSC_hg19_v1_chrX_-_48328624 NM_033518	807	-	BC005325|SSX4|6759|synovial sarcoma, X breakpoint 4##NM_001034832|SSX4B|548313|synovial sarcoma, X breakpoint 4B##NM_001040612|SSX4B|548313|synovial sarcoma, X breakpoint 4B##NM_005636|SSX4|6759|synovial sarcoma, X breakpoint 4##NM_175729|SSX4|6759|synovial sarcoma, X breakpoint 4##BC005325|SSX4|6759|synovial sarcoma, X breakpoint 4##NM_001034832|SSX4B|548313|synovial sarcoma, X breakpoint 4B##NM_001040612|SSX4B|548313|synovial sarcoma, X breakpoint 4B##NM_005636|SSX4|6759|synovial sarcoma, X breakpoint 4##NM_175729|SSX4|6759|synovial sarcoma, X breakpoint 4##U90840|SSX3|10214|synovial sarcoma, X breakpoint 3##AK310348|SSX3|10214|synovial sarcoma, X breakpoint 3##AK310513|SSX3|10214|synovial sarcoma, X breakpoint 3##BC005904|SSX3|10214|synovial sarcoma, X breakpoint 3##NM_021014|SSX3|10214|synovial sarcoma, X breakpoint 3##NM_175711|SSX3|10214|synovial sarcoma, X breakpoint 3##BC103862|SSX3|10214|synovial sarcoma, X breakpoint 3##BC019246|SLC38A5|92745|solute carrier family 38, member 5##AK094788|SLC38A5|92745|solute carrier family 38, member 5##AF276889|SLC38A5|92745|solute carrier family 38, member 5##NM_033518|SLC38A5|92745|solute carrier family 38, member 5	0.988191	0.0	denovo_WM_7:4:0.804
chr11	102362796	102362905	reg1010453.p1	4.337	+	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	-39237	-	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-144822	+	TSC_hg19_v1_chr11_+_102217944 AK303197	-144921	+	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	38609	-	AB527354 NM_004771 Y12779	133205	-	AB527320 AF195192 AY358752 NM_022122	213605	-	DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20##AF195192|MMP27|64066|matrix metallopeptidase 27##AY358752|MMP27|64066|matrix metallopeptidase 27##NM_022122|MMP27|64066|matrix metallopeptidase 27	0.981158	0.0	denovo_WM_7:-5:0.498
chr11	47796728	47796876	reg1009702.p1	4.337	+	EU832174 EU832267 TSC_hg19_v1_chr11_-_47788867 AK054636 BC037404 BC006557 NM_015308 AB023231	-7850	-	CU691490 TSC_hg19_v1_chr11_-_47788838	-7965	-	TSC_hg19_v1_chr11_-_47788834 AK123898 AL137480	-7969	-	AB385295 D83781 TSC_hg19_v1_chr11_-_47869883 AK026236 BX647634 AK302396 AK304308 AL832029	73079	-	TSC_hg19_v1_chr11_-_47869903 BC125227 BC125228 BC009822 NM_015231	73176	-	TSC_hg19_v1_chr11_+_48002110 NM_001098503 NM_002843 U10886	205289	+	EU832174|FNBP4|23360|formin binding protein 4##EU832267|FNBP4|23360|formin binding protein 4##AK054636|FNBP4|23360|formin binding protein 4##BC037404|FNBP4|23360|formin binding protein 4##BC006557|FNBP4|23360|formin binding protein 4##NM_015308|FNBP4|23360|formin binding protein 4##AB023231|FNBP4|23360|formin binding protein 4##AK123898|FNBP4|23360|formin binding protein 4##AL137480|FNBP4|23360|formin binding protein 4##D83781|NUP160|23279|nucleoporin 160kDa##AK026236|NUP160|23279|nucleoporin 160kDa##BX647634|NUP160|23279|nucleoporin 160kDa##AK302396|NUP160|23279|nucleoporin 160kDa##AK304308|NUP160|23279|nucleoporin 160kDa##AL832029|NUP160|23279|nucleoporin 160kDa##BC125227|NUP160|23279|nucleoporin 160kDa##BC125228|NUP160|23279|nucleoporin 160kDa##BC009822|NUP160|23279|nucleoporin 160kDa##NM_015231|NUP160|23279|nucleoporin 160kDa##NM_001098503|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##NM_002843|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J##U10886|PTPRJ|5795|protein tyrosine phosphatase, receptor type, J	0.992584	0.0	denovo_WM_7:-26:0.674
chr3	66394875	66394987	reg1011471.p1	4.337	+	NM_001164796	-123764	+	AK092495 AX747571 NM_173471	-275647	+	BC062367 NM_001033057 NM_004742 NM_015520 TSC_hg19_v1_chr3_-_66024518	-370418	-	TSC_hg19_v1_chr3_+_66444897 AB075504	50028	+	AF381545 BC140907 NM_015541 AY730707	155921	-	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	156533	-	NM_001164796|SLC25A26|115286|solute carrier family 25, member 26##AK092495|SLC25A26|115286|solute carrier family 25, member 26##AX747571|SLC25A26|115286|solute carrier family 25, member 26##NM_173471|SLC25A26|115286|solute carrier family 25, member 26##BC062367|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_001033057|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_004742|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##NM_015520|MAGI1|9223|membrane associated guanylate kinase, WW and PDZ domain containing 1##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1	0.940972	0.0	denovo_WM_7:-37:0.354	denovo_WM_7:-38:0.255
chr6	43971162	43971342	reg1014276.p2	4.337	+	TSC_hg19_v1_chr6_+_43968321 BC029071 NM_001171992 NM_153246 BC032706 GQ129376 GQ129377	-2878	+	TSC_hg19_v1_chr6_+_43738771 M27281 M32977 AY047581 X62568 EU832814 GQ129408 CU688060 AB021221 AB451322 AB451451 AF091352 AF214570 AF430806 AF486837 AJ010438 AY263145 AY500353 AY766116 DQ229900	-232382	+	TSC_hg19_v1_chr6_+_43738511 BC011177 BC065522	-232718	+	CR627460 TSC_hg19_v1_chr6_+_44094741	123446	+	TSC_hg19_v1_chr6_-_44095161 AK312086	123908	-	TSC_hg19_v1_chr6_-_44095190 NM_032111	123946	-	BC029071|C6orf223|221416|chromosome 6 open reading frame 223##NM_001171992|C6orf223|221416|chromosome 6 open reading frame 223##NM_153246|C6orf223|221416|chromosome 6 open reading frame 223##BC032706|C6orf223|221416|chromosome 6 open reading frame 223##GQ129376|C6orf223|221416|chromosome 6 open reading frame 223##GQ129377|C6orf223|221416|chromosome 6 open reading frame 223##M27281|VEGFA|7422|vascular endothelial growth factor A##M32977|VEGFA|7422|vascular endothelial growth factor A##AY047581|VEGFA|7422|vascular endothelial growth factor A##X62568|VEGFA|7422|vascular endothelial growth factor A##EU832814|VEGFA|7422|vascular endothelial growth factor A##GQ129408|VEGFA|7422|vascular endothelial growth factor A##AB021221|VEGFA|7422|vascular endothelial growth factor A##AB451322|VEGFA|7422|vascular endothelial growth factor A##AB451451|VEGFA|7422|vascular endothelial growth factor A##AF091352|VEGFA|7422|vascular endothelial growth factor A##AF214570|VEGFA|7422|vascular endothelial growth factor A##AF430806|VEGFA|7422|vascular endothelial growth factor A##AF486837|VEGFA|7422|vascular endothelial growth factor A##AJ010438|VEGFA|7422|vascular endothelial growth factor A##AY263145|VEGFA|7422|vascular endothelial growth factor A##AY500353|VEGFA|7422|vascular endothelial growth factor A##AY766116|VEGFA|7422|vascular endothelial growth factor A##DQ229900|VEGFA|7422|vascular endothelial growth factor A##BC011177|VEGFA|7422|vascular endothelial growth factor A##BC065522|VEGFA|7422|vascular endothelial growth factor A##CR627460|TMEM63B|55362|transmembrane protein 63B##AK312086|MRPL14|64928|mitochondrial ribosomal protein L14##NM_032111|MRPL14|64928|mitochondrial ribosomal protein L14	0.0	0.0	
chr9	73034412	73034516	reg1008354.p1	4.337	+	D31716 S72504 NM_001206	-4909	-	AB451404 CU686806 AB464604 EU446889 TSC_hg19_v1_chr9_-_73028875 BC074879 BC074880 AK313631 BC069431	-5789	-	TSC_hg19_v1_chr9_+_72873993 AB385355 AJ310550 DQ893364 DQ896768	-160475	+	BC067733 AF325212 AK021788 AK225732 BC094699 NM_001007470 NM_020952 NM_024971 NM_206944 NM_206945 NM_206946 NM_206947 NM_206948 BC142972	449496	-	AJ505025 AJ505026 NM_001007471 TSC_hg19_v1_chr9_-_73736559	702072	-	AL136545 TSC_hg19_v1_chr9_-_74061901	1027419	-	D31716|KLF9|687|Kruppel-like factor 9##S72504|KLF9|687|Kruppel-like factor 9##NM_001206|KLF9|687|Kruppel-like factor 9##AB451404|KLF9|687|Kruppel-like factor 9##EU446889|KLF9|687|Kruppel-like factor 9##BC074879|KLF9|687|Kruppel-like factor 9##BC074880|KLF9|687|Kruppel-like factor 9##AK313631|KLF9|687|Kruppel-like factor 9##BC069431|KLF9|687|Kruppel-like factor 9##AJ310550|SMC5|23137|structural maintenance of chromosomes 5##DQ893364|SMC5|23137|structural maintenance of chromosomes 5##DQ896768|SMC5|23137|structural maintenance of chromosomes 5##BC067733|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AF325212|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK021788|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AK225732|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC094699|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007470|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_020952|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_024971|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206944|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206945|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206946|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206947|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_206948|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##BC142972|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505025|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505026|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007471|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AL136545|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3	0.980958	0.0	denovo_WM_7:-17:0.395	denovo_WM_7:-18:0.586
chr12	118454149	118454327	reg1011284.p1	4.336	+	NM_173598	-48211	-	AK294435 AF446135 EU753241 U17327 AK307481 NM_000620 NM_001204218	-654730	-	AF446136 TSC_hg19_v1_chr12_-_117799037	-655217	-	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	330	+	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	44697	-	TSC_hg19_v1_chr12_-_118499892 AK295555	45697	-	NM_173598|KSR2|283455|kinase suppressor of ras 2##AK294435|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446135|NOS1|4842|nitric oxide synthase 1 (neuronal)##EU753241|NOS1|4842|nitric oxide synthase 1 (neuronal)##U17327|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK307481|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_000620|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204218|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446136|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2##AK295555|WSB2|55884|WD repeat and SOCS box containing 2	1.407756	0.0	denovo_WM_7:-35:0.331	denovo_WM_7:-36:0.331	denovo_WM_7:-37:0.331	denovo_WM_7:-54:0.309
chr20	43217597	43217777	reg1013190.p1	4.336	+	AK309209 TSC_hg19_v1_chr20_+_43211227	-6464	+	NM_007066 NM_181804 NM_181805 BC104256 BC104257 TSC_hg19_v1_chr20_+_43160482 AK312048 AF182032	-57171	+	AK295120 AK309993 TSC_hg19_v1_chr20_-_43150704 NM_006811 NM_198941	-66980	-	AB528992 DQ892681 DQ895924 TSC_hg19_v1_chr20_-_43280341 X02994 AK223397	62611	-	BC007678 TSC_hg19_v1_chr20_-_43280372 BC040226 NM_000022	62688	-	BC058074 TSC_hg19_v1_chr20_+_43343549 AK074695	125855	+	AK309209|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_007066|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_181804|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_181805|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC104256|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC104257|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AK312048|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AF182032|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AK295120|SERINC3|10955|serine incorporator 3##AK309993|SERINC3|10955|serine incorporator 3##NM_006811|SERINC3|10955|serine incorporator 3##NM_198941|SERINC3|10955|serine incorporator 3##DQ892681|ADA|100|adenosine deaminase##DQ895924|ADA|100|adenosine deaminase##X02994|ADA|100|adenosine deaminase##AK223397|ADA|100|adenosine deaminase##BC007678|ADA|100|adenosine deaminase##BC040226|ADA|100|adenosine deaminase##NM_000022|ADA|100|adenosine deaminase##BC058074|WISP2|8839|WNT1 inducible signaling pathway protein 2	0.0	0.0	
chr22	25962639	25962814	reg1007093.p1	4.336	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	-1780	+	TSC_hg19_v1_chr22_+_25960802 BC036797 NM_005160	-1927	+	TSC_hg19_v1_chr22_+_25844071 BC047380 BC037884	-118650	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	175394	+	TSC_hg19_v1_chr22_+_26138168 AY077700	175458	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	602711	+	BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC036797|ADRBK2|157|adrenergic, beta, receptor kinase 2##NM_005160|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC047380|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC037884|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB##AY077700|MYO18B|84700|myosin XVIIIB##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like	0.0	0.0	
chr3	42141402	42141507	reg1012549.p1	4.336	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	-8621	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-137895	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-900430	+	TSC_hg19_v1_chr3_+_42190749 AK294221	49294	+	AL713787 TSC_hg19_v1_chr3_+_42190865	49393	+	TSC_hg19_v1_chr3_+_42201684 BX647199 NM_014965 BC015922 AK000754 AM392573 AM393596 CU677507 EU446989	60301	+	AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1##BX647199|TRAK1|22906|trafficking protein, kinesin binding 1##NM_014965|TRAK1|22906|trafficking protein, kinesin binding 1##BC015922|TRAK1|22906|trafficking protein, kinesin binding 1##AK000754|TRAK1|22906|trafficking protein, kinesin binding 1##AM392573|TRAK1|22906|trafficking protein, kinesin binding 1##AM393596|TRAK1|22906|trafficking protein, kinesin binding 1##EU446989|TRAK1|22906|trafficking protein, kinesin binding 1	0.0	0.730723	CTCF.p2:17:0.731
chr17	43124592	43124771	reg1011876.p1	4.335	+	TSC_hg19_v1_chr17_-_43045715 BC008798 NM_006688	-78983	-	TSC_hg19_v1_chr17_-_43025057 NM_001080443	-99619	-	BC062609 AB463686 J04569 BC013596 AF419299 BC041765 AK128790 TSC_hg19_v1_chr17_-_42992869 AK098380 AK098758 AK222683 AK295734 AK296259 AK303728 S40719 AK315398 NM_001131019 NM_001242376 NM_002055	-131796	-	TSC_hg19_v1_chr17_-_43128979 AK290755 NM_001128631 AK026608	4248	-	TSC_hg19_v1_chr17_-_43138397 BC006472 BC006546 NM_024819	13731	-	TSC_hg19_v1_chr17_+_43138673 Y17208 Y17209	13976	+	BC008798|C1QL1|10882|complement component 1, q subcomponent-like 1##NM_006688|C1QL1|10882|complement component 1, q subcomponent-like 1##NM_001080443|KIF18B|146909|kinesin family member 18B##BC062609|GFAP|2670|glial fibrillary acidic protein##J04569|GFAP|2670|glial fibrillary acidic protein##BC013596|GFAP|2670|glial fibrillary acidic protein##AF419299|GFAP|2670|glial fibrillary acidic protein##BC041765|GFAP|2670|glial fibrillary acidic protein##AK128790|GFAP|2670|glial fibrillary acidic protein##AK098380|GFAP|2670|glial fibrillary acidic protein##AK098758|GFAP|2670|glial fibrillary acidic protein##AK222683|GFAP|2670|glial fibrillary acidic protein##AK295734|GFAP|2670|glial fibrillary acidic protein##AK296259|GFAP|2670|glial fibrillary acidic protein##AK303728|GFAP|2670|glial fibrillary acidic protein##S40719|GFAP|2670|glial fibrillary acidic protein##AK315398|GFAP|2670|glial fibrillary acidic protein##NM_001131019|GFAP|2670|glial fibrillary acidic protein##NM_001242376|GFAP|2670|glial fibrillary acidic protein##NM_002055|GFAP|2670|glial fibrillary acidic protein##AK290755|DCAKD|79877|dephospho-CoA kinase domain containing##NM_001128631|DCAKD|79877|dephospho-CoA kinase domain containing##AK026608|DCAKD|79877|dephospho-CoA kinase domain containing##BC006472|DCAKD|79877|dephospho-CoA kinase domain containing##BC006546|DCAKD|79877|dephospho-CoA kinase domain containing##NM_024819|DCAKD|79877|dephospho-CoA kinase domain containing##Y17208|NMT1|4836|N-myristoyltransferase 1##Y17209|NMT1|4836|N-myristoyltransferase 1	0.968251	0.0	denovo_WM_7:-104:0.787
chr17	48784394	48784569	reg1008808.p2	4.335	+	TSC_hg19_v1_chr17_+_48712188 BC046126 NM_001144070 NM_003786 AF009670 Y17151 BC058907 AF085690 AF085691 AF085692 BC104952 BC137347 BC137348 AB208954 AF083552 AB010887 BC050370 AF104943 AB384796	-72272	+	TSC_hg19_v1_chr17_+_48638339 BC110995 AF124351 NM_018896 NM_198376 NM_198377 NM_198378 NM_198379 NM_198380 NM_198382 NM_198383 NM_198384 NM_198385 NM_198386 NM_198387 NM_198388 NM_198396 NM_198397	-146088	+	AK092731 TSC_hg19_v1_chr17_+_48624553 BC111029 AK025000 AK225189 AK291805 BC025255 NM_022827 BC065526 AK308616	-159923	+	AK314010 CR627413 TSC_hg19_v1_chr17_-_48785180 BC012978 EU164539 NM_052855	662	-	TSC_hg19_v1_chr17_+_48796963 NM_006107 NM_016424 AK290540 AK225980 AK023672 BC047043 BC056409 BC002925 AK295983 DQ013876 AK001925	12512	+	AF147357 TSC_hg19_v1_chr17_+_48821111	36629	+	BC046126|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##NM_001144070|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##NM_003786|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF009670|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##Y17151|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC058907|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085690|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085691|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF085692|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC104952|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC137347|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC137348|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AB208954|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF083552|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AB010887|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC050370|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##AF104943|ABCC3|8714|ATP-binding cassette, sub-family C (CFTR/MRP), member 3##BC110995|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##AF124351|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_018896|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198376|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198377|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198378|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198379|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198380|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198382|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198383|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198384|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198385|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198386|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198387|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198388|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198396|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##NM_198397|CACNA1G|8913|calcium channel, voltage-dependent, T type, alpha 1G subunit##AK092731|SPATA20|64847|spermatogenesis associated 20##BC111029|SPATA20|64847|spermatogenesis associated 20##AK025000|SPATA20|64847|spermatogenesis associated 20##AK225189|SPATA20|64847|spermatogenesis associated 20##AK291805|SPATA20|64847|spermatogenesis associated 20##BC025255|SPATA20|64847|spermatogenesis associated 20##NM_022827|SPATA20|64847|spermatogenesis associated 20##BC065526|SPATA20|64847|spermatogenesis associated 20##AK308616|SPATA20|64847|spermatogenesis associated 20##AK314010|ANKRD40|91369|ankyrin repeat domain 40##CR627413|ANKRD40|91369|ankyrin repeat domain 40##BC012978|ANKRD40|91369|ankyrin repeat domain 40##EU164539|ANKRD40|91369|ankyrin repeat domain 40##NM_052855|ANKRD40|91369|ankyrin repeat domain 40##NM_006107|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##NM_016424|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK290540|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK225980|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK023672|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC047043|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC056409|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##BC002925|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK295983|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##DQ013876|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AK001925|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)##AF147357|LUC7L3|51747|LUC7-like 3 (S. cerevisiae)	0.024622	0.0	
chr19	10356214	10356281	reg1012054.p2	4.335	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-14241	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-50520	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-50642	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	6400	+	TSC_hg19_v1_chr19_+_10362889 BC009858	6651	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	6745	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.016419	
chr10	27124040	27124135	reg1010671.p2	4.334	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-66270	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-137441	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-137503	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	25753	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	25852	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	25918	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	1.03878	0.0	
chr14	64168472	64168652	reg1010407.p1	4.334	+	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-60000	-	BX248008 NM_001008726	-60438	-	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-158473	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	26187	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	151133	+	NM_182913 AY061758 AK297874	512315	+	AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.997838	0.0	denovo_WM_7:82:0.449	denovo_WM_7:83:0.449
chr1	6454028	6454094	reg1013713.p1	4.334	+	BC017365 AK057168 NM_007274	-262	-	BT006888 TSC_hg19_v1_chr1_-_6453439 AB074415 AB074416 D88894 AK289572 AK300831	-650	-	AK290097 AB074417 NM_181864	-8252	-	AB463714 BC132698 BC136963 BC142687 TSC_hg19_v1_chr1_-_6479976 AK091122 NM_019089	25869	-	TSC_hg19_v1_chr1_+_6484835 AL136880 NM_031475	30770	+	U83597 U83598 U75380 U75381 U94512 AB308321 AB590587 HQ258574 U72763 U78029 U94501 U94502 U94503 U94504 U94505 U94506 U94507 U94508 U94509 U94510 TSC_hg19_v1_chr1_-_6526206 AF026070 AF026071 BC117189 BC143886 Y09392 AY358309 NM_001039664 NM_003790 NM_148965 NM_148966 NM_148967 NM_148970 U74611	72141	-	BC017365|ACOT7|11332|acyl-CoA thioesterase 7##AK057168|ACOT7|11332|acyl-CoA thioesterase 7##NM_007274|ACOT7|11332|acyl-CoA thioesterase 7##BT006888|ACOT7|11332|acyl-CoA thioesterase 7##AB074415|ACOT7|11332|acyl-CoA thioesterase 7##AB074416|ACOT7|11332|acyl-CoA thioesterase 7##D88894|ACOT7|11332|acyl-CoA thioesterase 7##AK289572|ACOT7|11332|acyl-CoA thioesterase 7##AK300831|ACOT7|11332|acyl-CoA thioesterase 7##AK290097|ACOT7|11332|acyl-CoA thioesterase 7##AB074417|ACOT7|11332|acyl-CoA thioesterase 7##NM_181864|ACOT7|11332|acyl-CoA thioesterase 7##BC132698|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC136963|HES2|54626|hairy and enhancer of split 2 (Drosophila)##BC142687|HES2|54626|hairy and enhancer of split 2 (Drosophila)##AK091122|HES2|54626|hairy and enhancer of split 2 (Drosophila)##NM_019089|HES2|54626|hairy and enhancer of split 2 (Drosophila)##AL136880|ESPN|83715|espin##NM_031475|ESPN|83715|espin##U83597|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U83598|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U75380|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U75381|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94512|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AB308321|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##HQ258574|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U72763|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U78029|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94501|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94502|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94503|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94504|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94505|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94506|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94507|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94508|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94509|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U94510|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AF026070|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AF026071|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##BC117189|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##BC143886|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##Y09392|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##AY358309|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_001039664|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_003790|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148965|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148966|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148967|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##NM_148970|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25##U74611|TNFRSF25|8718|tumor necrosis factor receptor superfamily, member 25	0.0	0.0	
chr16	68753240	68753420	reg1000149.p1	4.334	+	X63629 TSC_hg19_v1_chr16_+_68679239 AB527800 EU832319 EU832404	-74076	+	TSC_hg19_v1_chr16_+_68679201 AK296968 AK312554 AK225396	-74125	+	NM_001793	-75180	+	AK312551 TSC_hg19_v1_chr16_+_68771194 AK297913 EU709494 NM_004360 BC141838 BC146662 L08599	17871	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	17889	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	17915	+	X63629|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832319|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832404|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK296968|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312554|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK225396|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##NM_001793|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312551|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK297913|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##EU709494|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##NM_004360|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC141838|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC146662|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##L08599|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)	0.993303	0.0	
chr19	5715717	5715855	reg1016711.p2	4.334	+	TSC_hg19_v1_chr19_+_5690333 NM_015414 BC003052 AF077043 AM393173 AM393746 DQ892096 DQ895289 CR533465	-25361	+	TSC_hg19_v1_chr19_+_5690307 BC004971	-25469	+	TSC_hg19_v1_chr19_+_5690306 NM_033643 BC091508 AL050273 AY590779 AK311990	-25498	+	TSC_hg19_v1_chr19_-_5720149 X76040 DQ892955 DQ896202 BC000235	4358	-	TSC_hg19_v1_chr19_-_5720155 AK096433 AK127867 AK298531 AK309720	4370	-	TSC_hg19_v1_chr19_-_5720158 AK096626 NM_004793	4381	-	NM_015414|RPL36|25873|ribosomal protein L36##BC003052|RPL36|25873|ribosomal protein L36##AF077043|RPL36|25873|ribosomal protein L36##AM393173|RPL36|25873|ribosomal protein L36##AM393746|RPL36|25873|ribosomal protein L36##DQ892096|RPL36|25873|ribosomal protein L36##DQ895289|RPL36|25873|ribosomal protein L36##CR533465|RPL36|25873|ribosomal protein L36##BC004971|RPL36|25873|ribosomal protein L36##NM_033643|RPL36|25873|ribosomal protein L36##BC091508|RPL36|25873|ribosomal protein L36##AL050273|RPL36|25873|ribosomal protein L36##AK311990|RPL36|25873|ribosomal protein L36##DQ892955|LONP1|9361|lon peptidase 1, mitochondrial##DQ896202|LONP1|9361|lon peptidase 1, mitochondrial##BC000235|LONP1|9361|lon peptidase 1, mitochondrial##AK096433|LONP1|9361|lon peptidase 1, mitochondrial##AK127867|LONP1|9361|lon peptidase 1, mitochondrial##AK298531|LONP1|9361|lon peptidase 1, mitochondrial##AK309720|LONP1|9361|lon peptidase 1, mitochondrial##AK096626|LONP1|9361|lon peptidase 1, mitochondrial##NM_004793|LONP1|9361|lon peptidase 1, mitochondrial	0.952016	0.0	denovo_WM_7:-102:0.229
chr2	181977713	181977846	reg1015012.p1	4.334	+	TSC_hg19_v1_chr2_+_181845809 AK314145	-131952	+	AF085362 BC003554 AB017644 TSC_hg19_v1_chr2_+_181845681	-132136	+	TSC_hg19_v1_chr2_+_181845369 BC092407	-132409	+	NM_000885	343839	+	BC055419 AJ504733 AJ508356 L12002 TSC_hg19_v1_chr2_+_182322149 AK303478 BC016671	344271	+	TSC_hg19_v1_chr2_+_182322277 X16983 AB527164	344543	+	AK314145|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AF085362|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC003554|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AB017644|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC092407|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##NM_000885|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC055419|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ504733|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ508356|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##L12002|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AK303478|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC016671|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##X16983|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	0.997098	0.0	denovo_WM_7:-33:0.793
chrX	48408794	48408914	reg1012793.p1	4.334	+	TSC_hg19_v1_chrX_+_48398162 AB449912 AK294776	-10650	+	TSC_hg19_v1_chrX_+_48398116 NM_002536 AK298884 AK293521 AK293875 AK316199 BC052609 BC101817 BC101819 BC143395 BC041614 BC064334 BC082255 BC125088 BC125089	-10751	+	NM_006579 TSC_hg19_v1_chrX_+_48380224 BC001549 BC001572 Z37986	-28645	+	NM_006743 TSC_hg19_v1_chrX_+_48432898 AK000859 AK289614 BX647914 BC006825 AY203954	23978	+	TSC_hg19_v1_chrX_-_48433257 AK129559	24410	-	TSC_hg19_v1_chrX_+_48455861 DQ907252	46982	+	AB449912|TBC1D25|4943|TBC1 domain family, member 25##AK294776|TBC1D25|4943|TBC1 domain family, member 25##NM_002536|TBC1D25|4943|TBC1 domain family, member 25##AK298884|TBC1D25|4943|TBC1 domain family, member 25##AK293521|TBC1D25|4943|TBC1 domain family, member 25##AK293875|TBC1D25|4943|TBC1 domain family, member 25##AK316199|TBC1D25|4943|TBC1 domain family, member 25##BC052609|TBC1D25|4943|TBC1 domain family, member 25##BC101817|TBC1D25|4943|TBC1 domain family, member 25##BC101819|TBC1D25|4943|TBC1 domain family, member 25##BC143395|TBC1D25|4943|TBC1 domain family, member 25##BC041614|TBC1D25|4943|TBC1 domain family, member 25##BC064334|TBC1D25|4943|TBC1 domain family, member 25##BC082255|TBC1D25|4943|TBC1 domain family, member 25##BC125088|TBC1D25|4943|TBC1 domain family, member 25##BC125089|TBC1D25|4943|TBC1 domain family, member 25##NM_006579|EBP|10682|emopamil binding protein (sterol isomerase)##BC001549|EBP|10682|emopamil binding protein (sterol isomerase)##BC001572|EBP|10682|emopamil binding protein (sterol isomerase)##Z37986|EBP|10682|emopamil binding protein (sterol isomerase)##NM_006743|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AK000859|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AK289614|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##BX647914|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##BC006825|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AY203954|RBM3|5935|RNA binding motif (RNP1, RRM) protein 3##AK129559|LOC729275|729275|uncharacterized LOC729275##DQ907252|WDR13|64743|WD repeat domain 13	0.99718	0.0	denovo_WM_7:21:0.976
chr12	113626474	113626600	reg1014663.p1	4.333	+	AK075358 AK123762 AK027741 TSC_hg19_v1_chr12_+_113623525 AY007158 AK027733 NM_032848 AK222908	-3064	+	BC005848 BC001132 BC001848 AY148094 TSC_hg19_v1_chr12_-_113623279 AF478457 NM_001111322 NM_024072	-3290	-	AK308987 NM_001144872	-38933	+	TSC_hg19_v1_chr12_-_113658844 BC013151 NM_138451 AK127152	32325	-	TSC_hg19_v1_chr12_+_113659268 AK093490 AX748162 NM_001143819 NM_017901 AY083666	32706	+	AB032995 BC152423 TSC_hg19_v1_chr12_+_113659278 BC136795 BC136796	32743	+	AK075358|C12orf52|84934|chromosome 12 open reading frame 52##AK123762|C12orf52|84934|chromosome 12 open reading frame 52##AK027741|C12orf52|84934|chromosome 12 open reading frame 52##AY007158|C12orf52|84934|chromosome 12 open reading frame 52##AK027733|C12orf52|84934|chromosome 12 open reading frame 52##NM_032848|C12orf52|84934|chromosome 12 open reading frame 52##AK222908|C12orf52|84934|chromosome 12 open reading frame 52##BC005848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001132|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##BC001848|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AY148094|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##AF478457|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001111322|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_024072|DDX54|79039|DEAD (Asp-Glu-Ala-Asp) box polypeptide 54##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B##BC013151|IQCD|115811|IQ motif containing D##NM_138451|IQCD|115811|IQ motif containing D##AK127152|IQCD|115811|IQ motif containing D##AK093490|TPCN1|53373|two pore segment channel 1##NM_001143819|TPCN1|53373|two pore segment channel 1##NM_017901|TPCN1|53373|two pore segment channel 1##AY083666|TPCN1|53373|two pore segment channel 1##AB032995|TPCN1|53373|two pore segment channel 1##BC152423|TPCN1|53373|two pore segment channel 1##BC136795|TPCN1|53373|two pore segment channel 1##BC136796|TPCN1|53373|two pore segment channel 1	2.02221	0.0	
chr14	93114376	93114490	reg1012669.p2	4.333	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-134474	+	NM_153646 AF520704 AF520705 BC069653	-324257	+	AK295059 NM_153647	-324897	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	4203	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	4390	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	100526	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.995815	0.0	denovo_WM_7:10:0.456	denovo_WM_7:11:0.456
chr15	31751774	31751873	reg1012324.p2	4.333	+	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	-132485	+	NM_001243538	-228774	-	GQ502181 HM135791 NM_001252020	-298395	-	AJ430383 NM_130901	195718	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	411006	-	TSC_hg19_v1_chr15_-_32162898 AK126002	411120	-	AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A##AK126002|OTUD7A|161725|OTU domain containing 7A	0.0	0.0	
chr17	70307239	70307382	reg1011622.p1	4.333	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-190070	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-190140	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-190151	+	AK000477 TSC_hg19_v1_chr17_-_70588944	281633	-	AF331643 TSC_hg19_v1_chr17_-_71088816	781506	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	781513	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.0	0.0	
chr19	49389750	49389837	reg1003496.p2	4.333	+	DQ891855 EU176641 TSC_hg19_v1_chr19_+_49376488 AB464097 CR457259	-13304	+	TSC_hg19_v1_chr19_+_49375698 BC003067 U83981	-14096	+	AK001361 AK225632 AK296668 AK297615 AK298765 AK311366 TSC_hg19_v1_chr19_+_49375677	-14116	+	U82469 BC026070 NM_003323	12173	-	AK292066 NM_006184	13513	+	TSC_hg19_v1_chr19_+_49403601 AK315422 BX647718 AK303126 AK222805 M96824	13791	+	DQ891855|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##EU176641|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##CR457259|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##BC003067|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##U83981|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK001361|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK225632|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK296668|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK297615|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##AK298765|PPP1R15A|23645|protein phosphatase 1, regulatory subunit 15A##U82469|TULP2|7288|tubby like protein 2##BC026070|TULP2|7288|tubby like protein 2##NM_003323|TULP2|7288|tubby like protein 2##AK292066|NUCB1|4924|nucleobindin 1##NM_006184|NUCB1|4924|nucleobindin 1##AK315422|NUCB1|4924|nucleobindin 1##BX647718|NUCB1|4924|nucleobindin 1##AK303126|NUCB1|4924|nucleobindin 1##AK222805|NUCB1|4924|nucleobindin 1##M96824|NUCB1|4924|nucleobindin 1	0.0	0.0	
chr19	5884624	5884716	reg1009840.p1	4.333	+	BC140905 NM_002034 U27329 U27330	-14122	-	TSC_hg19_v1_chr19_-_5851461 AK291852 X53578 AK313575 U27326 U27327 U27328 NM_000149 NM_001097639 NM_001097640 NM_001097641	-33189	-	BC074836 BC074837 BC108675 TSC_hg19_v1_chr19_-_5846545 AF131913	-38156	-	AJ539081 TSC_hg19_v1_chr19_-_5903795 AX775861 BC069045 AY726561 AK127692 AK291087	19090	-	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	19337	-	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	20199	+	BC140905|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##NM_002034|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27329|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27330|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##AK291852|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##X53578|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AK313575|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27326|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27327|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27328|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_000149|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097639|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097640|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097641|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##BC074836|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##BC074837|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##BC108675|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AF131913|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AJ539081|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC069045|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AY726561|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK127692|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein	0.999398	0.0	denovo_WM_7:56:0.739
chr6	36305640	36305763	reg1012181.p1	4.333	+	BC140873 BX648558 NM_001010903 TSC_hg19_v1_chr6_-_36304663	-1076	-	AM182887 FJ457781 NM_001145717	-67465	+	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	-94740	+	AF175387 AF218365 AF116508 AF116509 AF116510 AF218235 AF218366 BC035853 AK301011 AF147782 AK223424 AJ276205 AK026144 NM_001207038 AK303829 NM_001207035 NM_001207036 NM_001207037 NM_001207039 NM_001207040 NM_001207041 NM_016135	49758	-	BC031105 NM_152990	104964	-	AY305862 NM_173562 TSC_hg19_v1_chr6_+_36410797 AK295717 AK316456	104969	+	BC140873|C6orf222|389384|chromosome 6 open reading frame 222##BX648558|C6orf222|389384|chromosome 6 open reading frame 222##NM_001010903|C6orf222|389384|chromosome 6 open reading frame 222##AM182887|PNPLA1|285848|patatin-like phospholipase domain containing 1##FJ457781|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145717|PNPLA1|285848|patatin-like phospholipase domain containing 1##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1##AF175387|ETV7|51513|ets variant 7##AF218365|ETV7|51513|ets variant 7##AF116508|ETV7|51513|ets variant 7##AF116509|ETV7|51513|ets variant 7##AF116510|ETV7|51513|ets variant 7##AF218235|ETV7|51513|ets variant 7##AF218366|ETV7|51513|ets variant 7##BC035853|ETV7|51513|ets variant 7##AK301011|ETV7|51513|ets variant 7##AF147782|ETV7|51513|ets variant 7##AK223424|ETV7|51513|ets variant 7##AJ276205|ETV7|51513|ets variant 7##AK026144|ETV7|51513|ets variant 7##NM_001207038|ETV7|51513|ets variant 7##AK303829|ETV7|51513|ets variant 7##NM_001207035|ETV7|51513|ets variant 7##NM_001207036|ETV7|51513|ets variant 7##NM_001207037|ETV7|51513|ets variant 7##NM_001207039|ETV7|51513|ets variant 7##NM_001207040|ETV7|51513|ets variant 7##NM_001207041|ETV7|51513|ets variant 7##NM_016135|ETV7|51513|ets variant 7##BC031105|PXT1|222659|peroxisomal, testis specific 1##NM_152990|PXT1|222659|peroxisomal, testis specific 1##AY305862|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_173562|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK295717|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK316456|KCTD20|222658|potassium channel tetramerisation domain containing 20	1.984208	0.0	denovo_WM_7:-78:0.309
chr8	81998165	81998249	reg1005773.p2	4.333	+	AK131274 NM_001033723	-211192	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-599723	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-914437	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	26107	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	194566	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	361462	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	1.978389	0.0	denovo_WM_7:5:0.958	denovo_WM_7:20:0.972
chr16	70471392	70471529	reg1014442.p2	4.332	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-90632	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-138312	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-138384	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	1521	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	17039	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	31380	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	0.936364	0.0	denovo_WM_7:-42:0.223	denovo_WM_7:-43:0.609
chr17	17053904	17054047	reg1010809.p2	4.332	+	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	-108011	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-178571	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-460371	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	55638	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	55682	-	TSC_hg19_v1_chr17_-_17140464 AF517523 BC015687	86470	-	NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6##AF517523|FLCN|201163|folliculin##BC015687|FLCN|201163|folliculin	0.996888	0.0	
chr22	41874039	41874175	reg1003646.p1	4.332	+	TSC_hg19_v1_chr22_+_41865120 AK293562 AK297213 AK301321 AK314845 AK302691 AK296260 BC026196 BC014092 NM_001098 U80040 CR456365 AB385022 CR536568 CU012932 CU013220 DQ893674 DQ895836	-8976	+	AB489147 CU012956 CU013244 EU446678 TSC_hg19_v1_chr22_-_41864681 BC075808 CR456398 BC007321 NM_032758	-9423	-	TSC_hg19_v1_chr22_-_41842881 NM_016272	-31168	-	TSC_hg19_v1_chr22_-_41940381 AB051452 BC088367 BC017248	66246	-	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	66393	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	82962	+	AK293562|ACO2|50|aconitase 2, mitochondrial##AK297213|ACO2|50|aconitase 2, mitochondrial##AK301321|ACO2|50|aconitase 2, mitochondrial##AK314845|ACO2|50|aconitase 2, mitochondrial##AK302691|ACO2|50|aconitase 2, mitochondrial##AK296260|ACO2|50|aconitase 2, mitochondrial##BC026196|ACO2|50|aconitase 2, mitochondrial##BC014092|ACO2|50|aconitase 2, mitochondrial##NM_001098|ACO2|50|aconitase 2, mitochondrial##U80040|ACO2|50|aconitase 2, mitochondrial##CR456365|ACO2|50|aconitase 2, mitochondrial##CR536568|ACO2|50|aconitase 2, mitochondrial##CU012932|ACO2|50|aconitase 2, mitochondrial##CU013220|ACO2|50|aconitase 2, mitochondrial##DQ893674|ACO2|50|aconitase 2, mitochondrial##DQ895836|ACO2|50|aconitase 2, mitochondrial##CU012956|PHF5A|84844|PHD finger protein 5A##CU013244|PHF5A|84844|PHD finger protein 5A##EU446678|PHF5A|84844|PHD finger protein 5A##BC075808|PHF5A|84844|PHD finger protein 5A##CR456398|PHF5A|84844|PHD finger protein 5A##BC007321|PHF5A|84844|PHD finger protein 5A##NM_032758|PHF5A|84844|PHD finger protein 5A##NM_016272|TOB2|10766|transducer of ERBB2, 2##AB051452|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC088367|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC017248|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding	0.243731	0.0	denovo_WM_7:-30:0.225
chr7	26234673	26234797	reg1012830.p2	4.332	+	TSC_hg19_v1_chr7_-_26232151 BX538099	-2584	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	-42802	+	AB040290 AF330057 AF440392 NM_022150	-966655	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	5606	-	TSC_hg19_v1_chr7_-_26240364 AK129839 AK289429	5629	-	TSC_hg19_v1_chr7_-_26240367 BX537494 NM_002137 NM_031243	5657	-	BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##AK129839|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##AK289429|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BX537494|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##NM_002137|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##NM_031243|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	1.989107	0.0	denovo_WM_7:-11:0.236	denovo_WM_7:-12:0.236	denovo_WM_7:-13:0.236	denovo_WM_7:-14:0.236	denovo_WM_7:14:0.739
chr9	32508141	32508217	reg1009441.p1	4.332	+	TSC_hg19_v1_chr9_+_32384682 BC018103	-123490	+	TSC_hg19_v1_chr9_+_32384648 AK308752 Z11559	-123530	+	TSC_hg19_v1_chr9_+_32384622 AK057904	-123552	+	AB385150 TSC_hg19_v1_chr9_-_32526215 AK301678 AK315040 BX647917 BC070029 BC132786 BC136610 AF038963 NM_014314 BC107731	18073	-	U82939 TSC_hg19_v1_chr9_-_32550876	42684	-	AB045732 AB045733 AF098300 TSC_hg19_v1_chr9_-_32552567 BC060884	44380	-	BC018103|ACO1|48|aconitase 1, soluble##AK308752|ACO1|48|aconitase 1, soluble##Z11559|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble##AK301678|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##AK315040|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BX647917|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC070029|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC132786|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC136610|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##AF038963|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##NM_014314|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC107731|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##U82939|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##AB045732|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##AB045733|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##AF098300|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##BC060884|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase	0.995682	0.0	
chr14	35454068	35454185	reg1012667.p1	4.331	+	TSC_hg19_v1_chr14_+_35452224 AK293319 AK300824 BC003389 BC000652 U51920	-1838	+	NM_001146282 NM_003136 TSC_hg19_v1_chr14_+_35452178 AK312853	-1983	+	AB032252 NM_013448 NM_182648	-109274	-	NM_001079519	59986	+	TSC_hg19_v1_chr14_+_35515574 AK096173 BC029559 BX640884 CR749796 NM_173607 BX640984 AL833508	61406	+	AY518537 AY518535 CU679673 AB464102 BC012563 AY518536 BC010293 AK310700 AK311337 BC006823 TSC_hg19_v1_chr14_-_35591207	137065	-	AK293319|SRP54|6729|signal recognition particle 54kDa##AK300824|SRP54|6729|signal recognition particle 54kDa##BC003389|SRP54|6729|signal recognition particle 54kDa##BC000652|SRP54|6729|signal recognition particle 54kDa##U51920|SRP54|6729|signal recognition particle 54kDa##NM_001146282|SRP54|6729|signal recognition particle 54kDa##NM_003136|SRP54|6729|signal recognition particle 54kDa##AK312853|SRP54|6729|signal recognition particle 54kDa##AB032252|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_013448|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_182648|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_001079519|FAM177A1|283635|family with sequence similarity 177, member A1##AK096173|FAM177A1|283635|family with sequence similarity 177, member A1##BC029559|FAM177A1|283635|family with sequence similarity 177, member A1##BX640884|FAM177A1|283635|family with sequence similarity 177, member A1##CR749796|FAM177A1|283635|family with sequence similarity 177, member A1##NM_173607|FAM177A1|283635|family with sequence similarity 177, member A1##BX640984|FAM177A1|283635|family with sequence similarity 177, member A1##AL833508|FAM177A1|283635|family with sequence similarity 177, member A1##AY518537|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY518535|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC012563|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY518536|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC010293|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK310700|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK311337|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC006823|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma	0.995634	0.0	denovo_WM_7:-2:0.441	denovo_WM_7:-3:0.441
chr16	72042314	72042396	reg1014619.p1	4.331	+	AY164485 NM_181536	-8479	-	TSC_hg19_v1_chr16_+_71929438 AK295066 AK301918 AK057902 AK293022 AK297088 AB097052 D79996 BC000430 BC004359 NM_014761 BC000116	-112912	+	TSC_hg19_v1_chr16_+_71929421 AK291388 AK297336 BC103745	-112941	+	AK292293 TSC_hg19_v1_chr16_+_72042642 NM_001361 BC065245	239	+	NM_001126102 NM_005143 AK314700 BC107587 AK055872 BC017862 BC058031 BC070299 K01763 L29394 BC121124 BC121125 X00637 K00422	46168	+	NM_020995	54769	+	AY164485|PKD1L3|342372|polycystic kidney disease 1-like 3##NM_181536|PKD1L3|342372|polycystic kidney disease 1-like 3##AK295066|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK301918|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK057902|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK293022|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297088|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AB097052|IST1|9798|increased sodium tolerance 1 homolog (yeast)##D79996|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000430|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC004359|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_014761|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000116|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK291388|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297336|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC103745|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK292293|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001361|DHODH|1723|dihydroorotate dehydrogenase (quinone)##BC065245|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001126102|HP|3240|haptoglobin##NM_005143|HP|3240|haptoglobin##AK314700|HP|3240|haptoglobin##BC107587|HP|3240|haptoglobin##AK055872|HP|3240|haptoglobin##BC017862|HP|3240|haptoglobin##BC058031|HP|3240|haptoglobin##BC070299|HP|3240|haptoglobin##K01763|HP|3240|haptoglobin##L29394|HP|3240|haptoglobin##BC121124|HP|3240|haptoglobin##BC121125|HP|3240|haptoglobin##X00637|HP|3240|haptoglobin##K00422|HP|3240|haptoglobin##NM_020995|HPR|3250|haptoglobin-related protein	0.0	0.0	
chr10	71929056	71929207	reg1011773.p2	4.330	+	TSC_hg19_v1_chr10_-_71906457 BC047424 NM_001040273 NM_173555	-22651	-	TSC_hg19_v1_chr10_-_71906446 BC030242 AK074968 BC111501 BC042629	-22703	-	TSC_hg19_v1_chr10_-_71905958 BC016840	-23125	-	TSC_hg19_v1_chr10_-_71930260 AK298591 AK312469 BC003658 AF274026 AF087897 AF217959 AF261717 AY008268 AL136724 NM_001142648 NM_020150	1148	-	AF108211 AB590125 AF217186 DQ893597 AB026723 TSC_hg19_v1_chr10_-_71993148 BC107882 AF154065 BC105034 BC105036 AF092439 AF119665 BC001022 BC061581 AK058193 NM_021129	64022	-	NM_022146	114318	-	BC047424|TYSND1|219743|trypsin domain containing 1##NM_001040273|TYSND1|219743|trypsin domain containing 1##NM_173555|TYSND1|219743|trypsin domain containing 1##BC030242|TYSND1|219743|trypsin domain containing 1##AK074968|TYSND1|219743|trypsin domain containing 1##BC111501|TYSND1|219743|trypsin domain containing 1##BC042629|TYSND1|219743|trypsin domain containing 1##BC016840|TYSND1|219743|trypsin domain containing 1##AK298591|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AK312469|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC003658|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF274026|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF087897|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF217959|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF261717|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AY008268|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AL136724|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_001142648|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_020150|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF108211|PPA1|5464|pyrophosphatase (inorganic) 1##AF217186|PPA1|5464|pyrophosphatase (inorganic) 1##DQ893597|PPA1|5464|pyrophosphatase (inorganic) 1##AB026723|PPA1|5464|pyrophosphatase (inorganic) 1##BC107882|PPA1|5464|pyrophosphatase (inorganic) 1##AF154065|PPA1|5464|pyrophosphatase (inorganic) 1##BC105034|PPA1|5464|pyrophosphatase (inorganic) 1##BC105036|PPA1|5464|pyrophosphatase (inorganic) 1##AF092439|PPA1|5464|pyrophosphatase (inorganic) 1##AF119665|PPA1|5464|pyrophosphatase (inorganic) 1##BC001022|PPA1|5464|pyrophosphatase (inorganic) 1##BC061581|PPA1|5464|pyrophosphatase (inorganic) 1##AK058193|PPA1|5464|pyrophosphatase (inorganic) 1##NM_021129|PPA1|5464|pyrophosphatase (inorganic) 1##NM_022146|NPFFR1|64106|neuropeptide FF receptor 1	0.984962	0.0	denovo_WM_7:-100:0.317	denovo_WM_7:-101:0.486
chr11	18289900	18290043	reg1015376.p2	4.330	+	NM_000331 NM_001178006 NM_199161 TSC_hg19_v1_chr11_+_18287810 BC007022 BC105796	-2163	+	M26152 AK307163 BC020795 BC058008 TSC_hg19_v1_chr11_-_18270183 NM_001127380 NM_001199744 NM_030754	-19778	-	NM_006512 TSC_hg19_v1_chr11_-_18258385	-31584	-	BC033640 TSC_hg19_v1_chr11_-_18343678 AK291663 AK292436 AB023234 AF534400 AF534401 AF534402 NM_007216 NM_181507 NM_181508 AY142148	53739	-	TSC_hg19_v1_chr11_+_18343825 NM_001142307 NM_005316 AK027003	53884	+	AK127204 AK299621 TSC_hg19_v1_chr11_+_18344113 AK299730 BC000365 BC004452 AK312974 M95809	54209	+	NM_000331|SAA1|6288|serum amyloid A1##NM_001178006|SAA1|6288|serum amyloid A1##NM_199161|SAA1|6288|serum amyloid A1##BC007022|SAA1|6288|serum amyloid A1##BC105796|SAA1|6288|serum amyloid A1##M26152|SAA2|6289|serum amyloid A2##AK307163|SAA2|6289|serum amyloid A2##BC020795|SAA2|6289|serum amyloid A2##BC058008|SAA2|6289|serum amyloid A2##NM_001127380|SAA2|6289|serum amyloid A2##NM_001199744|SAA2-SAA4|100528017|SAA2-SAA4 readthrough##NM_030754|SAA2|6289|serum amyloid A2##NM_006512|SAA4|6291|serum amyloid A4, constitutive##BC033640|HPS5|11234|Hermansky-Pudlak syndrome 5##AK291663|HPS5|11234|Hermansky-Pudlak syndrome 5##AK292436|HPS5|11234|Hermansky-Pudlak syndrome 5##AB023234|HPS5|11234|Hermansky-Pudlak syndrome 5##AF534400|HPS5|11234|Hermansky-Pudlak syndrome 5##AF534401|HPS5|11234|Hermansky-Pudlak syndrome 5##AF534402|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_007216|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_181507|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_181508|HPS5|11234|Hermansky-Pudlak syndrome 5##NM_001142307|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##NM_005316|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##AK027003|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##AK127204|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##AK299621|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##AK299730|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##BC000365|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##BC004452|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##AK312974|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa##M95809|GTF2H1|2965|general transcription factor IIH, polypeptide 1, 62kDa	0.798072	0.0	denovo_WM_7:-45:0.572	denovo_WM_7:-46:0.226
chr1	206728798	206728931	reg1009431.p1	4.330	+	TSC_hg19_v1_chr1_+_206680863 AK291268 AY062002 AY062003 BC004270 BC007203 NM_182663 NM_182664 AB209145 DQ892961 DQ896208	-47963	+	TSC_hg19_v1_chr1_+_206680860 AK289861	-48003	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	-85019	+	TSC_hg19_v1_chr1_+_206730491 NM_182665 AF445801	1611	+	TSC_hg19_v1_chr1_+_206730542 BC042651 AY216268	1656	+	AL832784 AY261332 AK292039 TSC_hg19_v1_chr1_+_206730613	1744	+	AK291268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062002|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062003|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC004270|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC007203|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182663|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182664|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AB209145|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ892961|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ896208|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK289861|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_182665|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AF445801|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC042651|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY216268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AL832784|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY261332|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK292039|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5	0.0	0.0	
chr19	7289171	7289339	reg1012571.p2	4.330	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-189704	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-219540	+	AK315405 NM_001044387 NM_001044388 NM_024341	-219793	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	4705	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	170752	+	TSC_hg19_v1_chr19_+_7460061 AB011093	170822	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.0	0.0	
chr20	46016357	46016492	reg1015168.p2	4.330	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-30936	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-39777	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-88855	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	114198	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	114260	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	398328	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	3.638402	0.0	denovo_WM_7:-39:0.668	denovo_WM_7:-54:0.633	denovo_WM_7:-55:0.248	denovo_WM_7:-83:0.978	denovo_WM_7:-98:0.977
chr21	43426520	43426650	reg1009050.p1	4.330	+	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	-52502	-	BC062323 AL833323 NM_199050	-79796	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	-127087	-	TSC_hg19_v1_chr21_-_43430467 AB033053 AK300291 BC063290 AK308179 AB041014 AB041015 AB190372 AB190373 AB190374 CR933655 NM_001098402 NM_001098403 NM_020727	3886	-	AB051810 AB051811 NM_001199527 NM_001199528	56482	+	AB096965 AY771619 AY771620 NM_001004416 NM_173568	64840	+	AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##AB033053|ZNF295|49854|zinc finger protein 295##AK300291|ZNF295|49854|zinc finger protein 295##BC063290|ZNF295|49854|zinc finger protein 295##AK308179|ZNF295|49854|zinc finger protein 295##AB041014|ZNF295|49854|zinc finger protein 295##AB041015|ZNF295|49854|zinc finger protein 295##AB190372|ZNF295|49854|zinc finger protein 295##AB190373|ZNF295|49854|zinc finger protein 295##AB190374|ZNF295|49854|zinc finger protein 295##CR933655|ZNF295|49854|zinc finger protein 295##NM_001098402|ZNF295|49854|zinc finger protein 295##NM_001098403|ZNF295|49854|zinc finger protein 295##NM_020727|ZNF295|49854|zinc finger protein 295##AB051810|UMODL1|89766|uromodulin-like 1##AB051811|UMODL1|89766|uromodulin-like 1##NM_001199527|UMODL1|89766|uromodulin-like 1##NM_001199528|UMODL1|89766|uromodulin-like 1##AB096965|UMODL1|89766|uromodulin-like 1##AY771619|UMODL1|89766|uromodulin-like 1##AY771620|UMODL1|89766|uromodulin-like 1##NM_001004416|UMODL1|89766|uromodulin-like 1##NM_173568|UMODL1|89766|uromodulin-like 1	1.573849	0.0	denovo_WM_7:-24:0.504	denovo_WM_7:-38:0.245	denovo_WM_7:-39:0.748
chr22	40329840	40329943	reg1009914.p1	4.330	+	AK303280 AK303657 AK312830 TSC_hg19_v1_chr22_+_40322634 AK303470	-7267	+	TSC_hg19_v1_chr22_+_40297183 AF129476 AF090456 CR456498 Y18051	-32644	+	AY069959 NM_004810 TSC_hg19_v1_chr22_+_40297087 AK303332 AK303512 AF236119 AJ011736 BC025692 AF042380 AF102694	-32767	+	TSC_hg19_v1_chr22_+_40390935 BC031099 NM_138435	61053	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	111018	+	TSC_hg19_v1_chr22_+_40441403 BC028626	111541	+	AK303280|GRAP2|9402|GRB2-related adaptor protein 2##AK303657|GRAP2|9402|GRB2-related adaptor protein 2##AK312830|GRAP2|9402|GRB2-related adaptor protein 2##AK303470|GRAP2|9402|GRB2-related adaptor protein 2##AF129476|GRAP2|9402|GRB2-related adaptor protein 2##AF090456|GRAP2|9402|GRB2-related adaptor protein 2##CR456498|GRAP2|9402|GRB2-related adaptor protein 2##Y18051|GRAP2|9402|GRB2-related adaptor protein 2##AY069959|GRAP2|9402|GRB2-related adaptor protein 2##NM_004810|GRAP2|9402|GRB2-related adaptor protein 2##AK303332|GRAP2|9402|GRB2-related adaptor protein 2##AK303512|GRAP2|9402|GRB2-related adaptor protein 2##AF236119|GRAP2|9402|GRB2-related adaptor protein 2##AJ011736|GRAP2|9402|GRB2-related adaptor protein 2##BC025692|GRAP2|9402|GRB2-related adaptor protein 2##AF042380|GRAP2|9402|GRB2-related adaptor protein 2##AF102694|GRAP2|9402|GRB2-related adaptor protein 2##BC031099|FAM83F|113828|family with sequence similarity 83, member F##NM_138435|FAM83F|113828|family with sequence similarity 83, member F##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B	0.994553	0.0	denovo_WM_7:-35:0.499	denovo_WM_7:-38:0.333
chr3	169887803	169887930	reg1015782.p1	4.330	+	TSC_hg19_v1_chr3_+_169755984 AK311293	-131914	+	TSC_hg19_v1_chr3_+_169755782 BC000181	-132076	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	-132112	+	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	11579	-	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	11662	-	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	52351	+	AK311293|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota	0.632789	0.0	denovo_WM_7:12:0.427
chr5	31533343	31533462	reg1011094.p1	4.330	+	NM_018356 TSC_hg19_v1_chr5_+_31532398 BC032845 AK299156 AK002055 BC021215 AB527598	-967	+	TSC_hg19_v1_chr5_-_31532201 AK308093 AF189011 BC054003 BX647724 NM_001100412 NM_013235	-1180	-	TSC_hg19_v1_chr5_+_31193875 BC000019 AK024238	-339525	+	TSC_hg19_v1_chr5_+_31639424 AB002298	106068	+	NM_178140	265628	+	TSC_hg19_v1_chr5_+_32173523 AK055939	640114	+	NM_018356|C5orf22|55322|chromosome 5 open reading frame 22##BC032845|C5orf22|55322|chromosome 5 open reading frame 22##AK299156|C5orf22|55322|chromosome 5 open reading frame 22##AK002055|C5orf22|55322|chromosome 5 open reading frame 22##BC021215|C5orf22|55322|chromosome 5 open reading frame 22##AK308093|DROSHA|29102|drosha, ribonuclease type III##AF189011|DROSHA|29102|drosha, ribonuclease type III##BC054003|DROSHA|29102|drosha, ribonuclease type III##BX647724|DROSHA|29102|drosha, ribonuclease type III##NM_001100412|DROSHA|29102|drosha, ribonuclease type III##NM_013235|DROSHA|29102|drosha, ribonuclease type III##BC000019|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK024238|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AB002298|PDZD2|23037|PDZ domain containing 2##NM_178140|PDZD2|23037|PDZ domain containing 2##AK055939|LOC153546|153546|uncharacterized LOC153546	0.999821	0.0	denovo_WM_7:-24:0.842
chr7	104987221	104987401	reg1012588.p1	4.330	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-77828	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-234933	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-305897	+	TSC_hg19_v1_chr7_-_105029265 AB489157	41954	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	42031	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	175350	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.996911	0.0	denovo_WM_7:1:0.239	denovo_WM_7:2:0.239	denovo_WM_7:3:0.239	denovo_WM_7:4:0.239
chr1	113164838	113164972	reg1014057.p4	4.329	+	TSC_hg19_v1_chr1_+_113162456 BT019364 CR407657 CR541819 DQ890754 DQ893919 U56637	-2440	+	BC000144 TSC_hg19_v1_chr1_+_113162453 AK223226	-2454	+	TSC_hg19_v1_chr1_+_113162439 AK289654	-2472	+	TSC_hg19_v1_chr1_+_113217108 AL833353 NM_001130079 NM_020963 AK310512 AK226011	52210	+	TSC_hg19_v1_chr1_+_113217295 AK023297 AB046851 BX647787 BC009312 BC025339 AK074174	52427	+	BC002548 TSC_hg19_v1_chr1_+_113217490	52573	+	BT019364|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR407657|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR541819|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ890754|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ893919|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##U56637|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##BC000144|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK223226|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK289654|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AL833353|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_001130079|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_020963|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK310512|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK226011|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK023297|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AB046851|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BX647787|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC009312|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC025339|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK074174|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC002548|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)	0.0	0.0	
chr11	83841845	83842025	reg1012564.p1	4.329	+	AK299778 CR933674 NM_001142702	-448484	-	AF271782 NM_021825 BC048795 TSC_hg19_v1_chr11_-_82997434 AK304769 AK315787 BC107755	-844530	-	TSC_hg19_v1_chr11_-_82997032 AB528098 AM393290 AM393494 CU676716 BC067764 AF182412 AF182424 AK055972 BC020783 AK225726 AK292349 BC017771 BC032701 BC014573 AL136791	-844902	-	AK294375 AK126776 AK295624 NM_001142700	142341	-	AK127150 NM_001206769 TSC_hg19_v1_chr11_-_84028381	186446	-	TSC_hg19_v1_chr11_-_84634219 AK299797 BC143964	792297	-	AK299778|DLG2|1740|discs, large homolog 2 (Drosophila)##CR933674|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142702|DLG2|1740|discs, large homolog 2 (Drosophila)##AF271782|CCDC90B|60492|coiled-coil domain containing 90B##NM_021825|CCDC90B|60492|coiled-coil domain containing 90B##BC048795|CCDC90B|60492|coiled-coil domain containing 90B##AK304769|CCDC90B|60492|coiled-coil domain containing 90B##AK315787|CCDC90B|60492|coiled-coil domain containing 90B##BC107755|CCDC90B|60492|coiled-coil domain containing 90B##BC067764|CCDC90B|60492|coiled-coil domain containing 90B##AF182412|CCDC90B|60492|coiled-coil domain containing 90B##AF182424|CCDC90B|60492|coiled-coil domain containing 90B##AK055972|CCDC90B|60492|coiled-coil domain containing 90B##BC020783|CCDC90B|60492|coiled-coil domain containing 90B##AK225726|CCDC90B|60492|coiled-coil domain containing 90B##BC017771|CCDC90B|60492|coiled-coil domain containing 90B##BC032701|CCDC90B|60492|coiled-coil domain containing 90B##BC014573|CCDC90B|60492|coiled-coil domain containing 90B##AL136791|CCDC90B|60492|coiled-coil domain containing 90B##AK294375|DLG2|1740|discs, large homolog 2 (Drosophila)##AK126776|DLG2|1740|discs, large homolog 2 (Drosophila)##AK295624|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001142700|DLG2|1740|discs, large homolog 2 (Drosophila)##AK127150|DLG2|1740|discs, large homolog 2 (Drosophila)##NM_001206769|DLG2|1740|discs, large homolog 2 (Drosophila)##AK299797|DLG2|1740|discs, large homolog 2 (Drosophila)##BC143964|DLG2|1740|discs, large homolog 2 (Drosophila)	0.979172	0.0	denovo_WM_7:9:0.841
chr12	57737606	57737697	reg1008949.p2	4.329	+	NM_014925	-33406	-	AB384552 TSC_hg19_v1_chr12_-_57693218	-44469	-	TSC_hg19_v1_chr12_-_57674254 X85326	-63374	-	AB023219 AX775761 AX775763 TSC_hg19_v1_chr12_-_57824797	87161	-	TSC_hg19_v1_chr12_+_57828511 AK314849 BC020693 NM_005538 X82540 BC130324 BC130326 AB590801	90912	+	TSC_hg19_v1_chr12_+_57849089 NM_031479 AK075285 BC005161 AF412024	111447	+	NM_014925|R3HDM2|22864|R3H domain containing 2##AB023219|R3HDM2|22864|R3H domain containing 2##AX775761|R3HDM2|22864|R3H domain containing 2##AX775763|R3HDM2|22864|R3H domain containing 2##AK314849|INHBC|3626|inhibin, beta C##BC020693|INHBC|3626|inhibin, beta C##NM_005538|INHBC|3626|inhibin, beta C##BC130324|INHBC|3626|inhibin, beta C##BC130326|INHBC|3626|inhibin, beta C##NM_031479|INHBE|83729|inhibin, beta E##AK075285|INHBE|83729|inhibin, beta E##BC005161|INHBE|83729|inhibin, beta E##AF412024|INHBE|83729|inhibin, beta E	0.996136	0.0	
chr14	67792998	67793077	reg1013154.p2	4.329	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	-84874	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	-136894	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-817812	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	33529	-	TSC_hg19_v1_chr14_+_67827035 NM_004094	33996	+	TSC_hg19_v1_chr14_+_67827053 AK312442 BX161521 AK297244	34013	+	BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_004094|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##AK312442|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BX161521|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##AK297244|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa	1.993881	0.0	
chr14	75760621	75760801	reg1013535.p2	4.329	+	NM_005252 TSC_hg19_v1_chr14_+_75745530 AK097379 AK291326 AK298659 BX647104 BC004490 S65138 DQ893444 DQ896750 AB385594 CR541785 CR542267 CU678740	-15129	+	TSC_hg19_v1_chr14_-_75643341 NM_006827	-117359	-	BC001496 BC001825 TSC_hg19_v1_chr14_-_75643334	-117378	-	NM_001135047 TSC_hg19_v1_chr14_+_75894724	133930	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	134302	+	BC051303 NM_001135049	138125	+	NM_005252|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK097379|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK291326|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK298659|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BX647104|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BC004490|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##S65138|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ893444|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ896750|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR541785|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR542267|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##NM_006827|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001496|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001825|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2##BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2	1.354234	0.097155	denovo_WM_7:-75:0.352	denovo_WM_7:-93:0.550	denovo_WM_7:-94:0.238
chr2	55378073	55378204	reg1015085.p1	4.329	+	TSC_hg19_v1_chr2_-_55277709 AY123246 NM_020532 NM_153828 NM_207520	-100423	-	TSC_hg19_v1_chr2_-_55277672 AB040462 AB040463 AY102277 AY102278 AY102279 BC016165 BC068991 BC150182 BC152555	-100456	-	TSC_hg19_v1_chr2_-_55277661 AK075039	-100476	-	NM_001135592	80900	+	AK315683 TSC_hg19_v1_chr2_-_55459408 AK056000 BC029502 NM_152385	81289	-	NM_002954	81402	+	AY123246|RTN4|57142|reticulon 4##NM_020532|RTN4|57142|reticulon 4##NM_153828|RTN4|57142|reticulon 4##NM_207520|RTN4|57142|reticulon 4##AB040462|RTN4|57142|reticulon 4##AB040463|RTN4|57142|reticulon 4##AY102277|RTN4|57142|reticulon 4##AY102278|RTN4|57142|reticulon 4##AY102279|RTN4|57142|reticulon 4##BC016165|RTN4|57142|reticulon 4##BC068991|RTN4|57142|reticulon 4##BC150182|RTN4|57142|reticulon 4##BC152555|RTN4|57142|reticulon 4##AK075039|RTN4|57142|reticulon 4##NM_001135592|RPS27A|6233|ribosomal protein S27a##AK315683|C2orf63|130162|chromosome 2 open reading frame 63##AK056000|C2orf63|130162|chromosome 2 open reading frame 63##BC029502|C2orf63|130162|chromosome 2 open reading frame 63##NM_152385|C2orf63|130162|chromosome 2 open reading frame 63##NM_002954|RPS27A|6233|ribosomal protein S27a	0.989888	0.0	
chr15	91069958	91070129	reg1015541.p1	4.328	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-138504	+	TSC_hg19_v1_chr15_+_90931506 BC005906	-138537	+	TSC_hg19_v1_chr15_+_90931499 AK304337	-138549	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	3153	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	190571	+	NM_002569 X17094	341841	+	BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC005906|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK304337|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)	0.993732	0.0	denovo_WM_7:14:0.248	denovo_WM_7:15:0.248	denovo_WM_7:16:0.248	denovo_WM_7:17:0.248
chr16	4821900	4822005	reg1011895.p2	4.328	+	TSC_hg19_v1_chr16_-_4817164 AK291792 NM_021646 AK297993	-4768	-	TSC_hg19_v1_chr16_+_4784487 AK301794 BX648126	-37428	+	TSC_hg19_v1_chr16_+_4784320 AF447587 BC035024	-37622	+	BC024017 AX721308 AX721313 BC035619 AK058139 DQ456996 AK098718 DQ517531 EF620906 NM_001154458 NM_144605	16466	-	BC035868 NM_001253790 BC048326 NM_001253791	16474	+	BC128383 NM_001253793 NM_001253794	23369	+	AK291792|ZNF500|26048|zinc finger protein 500##NM_021646|ZNF500|26048|zinc finger protein 500##AK297993|ZNF500|26048|zinc finger protein 500##AK301794|C16orf71|146562|chromosome 16 open reading frame 71##BX648126|C16orf71|146562|chromosome 16 open reading frame 71##AF447587|C16orf71|146562|chromosome 16 open reading frame 71##BC035024|C16orf71|146562|chromosome 16 open reading frame 71##BC024017|SEPT12|124404|septin 12##BC035619|SEPT12|124404|septin 12##AK058139|SEPT12|124404|septin 12##DQ456996|SEPT12|124404|septin 12##AK098718|SEPT12|124404|septin 12##DQ517531|SEPT12|124404|septin 12##EF620906|SEPT12|124404|septin 12##NM_001154458|SEPT12|124404|septin 12##NM_144605|SEPT12|124404|septin 12##BC035868|LOC440335|440335|uncharacterized LOC440335##NM_001253790|LOC440335|440335|uncharacterized LOC440335##BC048326|LOC440335|440335|uncharacterized LOC440335##NM_001253791|LOC440335|440335|uncharacterized LOC440335##NM_001253793|LOC440335|440335|uncharacterized LOC440335##NM_001253794|LOC440335|440335|uncharacterized LOC440335	0.996443	0.0	
chr17	4324363	4324439	reg1015602.p2	4.328	+	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	-54493	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	-54690	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-157250	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	12841	+	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	77835	+	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	134273	-	AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a	0.995691	0.0	denovo_WM_7:49:0.302	denovo_WM_7:50:0.302	denovo_WM_7:51:0.302
chr2	24085030	24085166	reg1010191.p1	4.328	+	NM_052920	-476801	+	TSC_hg19_v1_chr2_-_21266940 AK290844 NM_000384 X04506 X04714	-2818169	-	TSC_hg19_v1_chr2_-_21266896 J02610 M12681	-2818199	-	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	64848	-	TSC_hg19_v1_chr2_+_24150144 BC037901	65059	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	78273	+	NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##AK290844|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_000384|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04506|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04714|APOB|338|apolipoprotein B (including Ag(x) antigen)##J02610|APOB|338|apolipoprotein B (including Ag(x) antigen)##M12681|APOB|338|apolipoprotein B (including Ag(x) antigen)##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037901|UBXN2A|165324|UBX domain protein 2A##BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A	0.998572	0.0	denovo_WM_7:-24:0.494	denovo_WM_7:-25:0.494
chr4	40553597	40553734	reg1013231.p2	4.328	+	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-35707	-	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	-37081	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-216220	+	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	78200	-	AK304206 TSC_hg19_v1_chr4_-_40632775	79042	-	BC042401 NM_024677 BC036568 AK024063	198281	+	AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK304206|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7	1.012968	0.0	denovo_WM_7:8:0.305	denovo_WM_7:9:0.305	denovo_WM_7:10:0.305
chr6	32568349	32568473	reg1011269.p2	4.328	+	AF010142 M16954 M16955 M16956 M16957 M16958 M16959 M17377 M17378 U31770 U17380 U17379 D86415 X99896 M28584 M30180 AF490771 AJ297582 AJ297583 AJ297584 AJ297585 AJ297587 AJ302075 AY626551 AY770514 AY935719 AY961062 AY961063 AY961064 AY961065 AY961066 AY961067 AY961069 AY961070 AY961071 AY961072 AY961073 AY961074 AY961076 AY961077 AY961078 DQ002917 DQ090958 EU375850 GQ891551 HM067843 HM067844 HM067847 HM067848 HM067849 HM067850 HM067852 HM067853 HM067854 HM067855 HM067856 HM067857 HM067858 HM067859 HM067860 HM067861 HM067862 HM067863 HM627215 M11161 M30179 AB528619 CU678949 CU689080 L02545 X99895 U84892 AJ697892 AJ697893 U95989 BC171883 M11867 M20504 M28583 L76133 U65585 BC033827 M20430 AB062112 M26038 BC007920 TSC_hg19_v1_chr6_-_32557583 M33600 BC108922 X12544 AK291499 X03069 AK225683 AK225690 AK289463 AK290388 BC008403 BC031023 AK291987 NM_001243965 NM_002124 AK293020	-10883	-	AF017439 TSC_hg19_v1_chr6_-_32552033 U56640 AF436097 U83583 U83584 U95818 M21008 AM056024	-16338	-	U17380 M30181 AB463852 M20429 NM_002125 BC009234 AK314834 TSC_hg19_v1_chr6_-_32498065 M57648 M32578 M20503	-70394	-	AK130811 AK313975 NM_002122 TSC_hg19_v1_chr6_+_32605182 BC073977 BC051832 AB209628 X00452 L46875 L46876 L46877 L46878 L46879 L46880 L46881 U77589 M34996 M20431 L34082 L34083 L34084 L34085 L34090 L34094 M59802	36832	+	L34097 L34098 L34101 L34102 L34103 L34105 L34106 L34107 L40180 L42626 M17207 M22550 M59800 M59801 U66400 M17565 X00369 M35982 M57649 AF000447 U83585 AF291674 AY656681 M16996 X96420 M17563 M17564 AF522251 AB209580 TSC_hg19_v1_chr6_-_32634435 AK295476 AK295695 M60028 M20432 AK296613 AK316333 M25327 X03068 NM_001243961 NM_002123 M16276	66029	-	NM_020056 TSC_hg19_v1_chr6_+_32709167 L34094	140814	+	AF010142|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16954|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16955|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16956|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M16957|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M16959|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M17377|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M17378|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U31770|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##U17379|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##D86415|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28584|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30180|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF490771|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297582|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ297583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ297587|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY626551|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY770514|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY935719|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961062|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961063|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961064|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961065|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961066|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961067|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961070|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AY961072|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961073|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961076|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961077|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AY961078|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ002917|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##DQ090958|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11161|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30179|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L02545|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##X99895|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AJ697892|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AJ697893|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M11867|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20504|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M28583|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##L76133|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U65585|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC033827|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M20430|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AB062112|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M26038|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC007920|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M33600|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC108922|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291499|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##X03069|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK225683|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK225690|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AK289463|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC008403|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##BC031023|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK291987|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_001243965|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##NM_002124|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AK293020|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##AF017439|HLA-DRB4|3126|major histocompatibility complex, class II, DR beta 4##U56640|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##AF436097|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##U95818|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M21008|HLA-DRB1|3123|major histocompatibility complex, class II, DR beta 1##M30181|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M20429|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##NM_002125|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##BC009234|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AK314834|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M57648|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M32578|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##M20503|HLA-DRB5|3127|major histocompatibility complex, class II, DR beta 5##AK130811|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AK313975|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##NM_002122|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC073977|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##BC051832|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##AB209628|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##X00452|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L46875|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##U77589|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M34996|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M20431|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34082|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34083|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34084|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34085|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34090|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##M59802|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1##L34097|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34098|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34101|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34102|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34103|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34105|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34106|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L34107|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L40180|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##L42626|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17207|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M22550|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59800|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M59801|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U66400|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17565|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X00369|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M35982|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M57649|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF000447|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##U83585|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AF291674|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AY656681|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16996|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X96420|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17563|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M17564|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AB209580|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295476|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK295695|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M60028|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M20432|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK296613|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##AK316333|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M25327|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##X03068|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_001243961|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_002123|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##M16276|HLA-DQB1|3119|major histocompatibility complex, class II, DQ beta 1##NM_020056|HLA-DQA2|3118|major histocompatibility complex, class II, DQ alpha 2##L34094|HLA-DQA1|3117|major histocompatibility complex, class II, DQ alpha 1	0.9984	0.0	denovo_WM_7:-35:0.494	denovo_WM_7:-36:0.494
chr12	110538138	110538318	reg1014616.p1	4.327	+	AK097461 NM_207435	-32729	-	TSC_hg19_v1_chr12_-_110486328 AK021447 BC041968	-51899	-	AK302535 BC032833 TSC_hg19_v1_chr12_+_110437393 CU691256 AY364251	-100785	+	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	23993	+	TSC_hg19_v1_chr12_+_110719041 NM_001681 NM_170665	180807	+	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	181140	+	AK097461|C12orf76|400073|chromosome 12 open reading frame 76##NM_207435|C12orf76|400073|chromosome 12 open reading frame 76##AK021447|C12orf76|400073|chromosome 12 open reading frame 76##BC041968|C12orf76|400073|chromosome 12 open reading frame 76##AK302535|ANKRD13A|88455|ankyrin repeat domain 13A##BC032833|ANKRD13A|88455|ankyrin repeat domain 13A##AY364251|ANKRD13A|88455|ankyrin repeat domain 13A##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_001681|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_170665|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	0.0	0.998961	CTCF.p2:-52:0.999
chr19	30164187	30164354	reg1010231.p1	4.327	+	TSC_hg19_v1_chr19_+_30156375 AK225814	-7849	+	NM_024310 TSC_hg19_v1_chr19_+_30156362 AK301616 AK027758 BC002744 BC018876	-7921	+	NM_006627 AK314790 TSC_hg19_v1_chr19_+_30097189 AF001176 BC013686 CR936714 Y18863 BC006098 AK303791 BC004438	-67081	+	NM_001031726 TSC_hg19_v1_chr19_-_30206184 BC004957 BC009946 BC063518 AK057185	41822	-	TSC_hg19_v1_chr19_-_30206402 NM_031448	42152	-	TSC_hg19_v1_chr19_+_30302897 AK291549 NM_001238 BC035498	138631	+	NM_024310|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##AK301616|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##AK027758|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##BC002744|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##BC018876|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##NM_006627|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AK314790|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AF001176|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC013686|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##CR936714|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##Y18863|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC006098|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AK303791|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC004438|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001031726|C19orf12|83636|chromosome 19 open reading frame 12##BC004957|C19orf12|83636|chromosome 19 open reading frame 12##BC009946|C19orf12|83636|chromosome 19 open reading frame 12##BC063518|C19orf12|83636|chromosome 19 open reading frame 12##AK057185|C19orf12|83636|chromosome 19 open reading frame 12##NM_031448|C19orf12|83636|chromosome 19 open reading frame 12##AK291549|CCNE1|898|cyclin E1##NM_001238|CCNE1|898|cyclin E1##BC035498|CCNE1|898|cyclin E1	0.017983	0.680068	CTCF.p2:-4:0.680
chr3	184466279	184466385	reg1011642.p2	4.327	+	AB590456 CU679591 AF320910 TSC_hg19_v1_chr3_-_184429853 AF295378 BC010056 NM_022149	-36569	-	TSC_hg19_v1_chr3_+_184279572 NM_004443 BC052968	-186750	+	AF209928 AF209929 AF209930 AF283325 NM_003741 AY358926 BC112345 AB208947 AK074147 AK293456 AK295632	-368292	+	TSC_hg19_v1_chr3_+_184529961 NM_001009921 NM_015303 AK056661 AK292423 BX647915	63591	+	TSC_hg19_v1_chr3_+_184529983 BC140768	63663	+	TSC_hg19_v1_chr3_-_184870632 BC137178 BC137179 BC150565	404321	-	AF320910|MAGEF1|64110|melanoma antigen family F, 1##AF295378|MAGEF1|64110|melanoma antigen family F, 1##BC010056|MAGEF1|64110|melanoma antigen family F, 1##NM_022149|MAGEF1|64110|melanoma antigen family F, 1##NM_004443|EPHB3|2049|EPH receptor B3##BC052968|EPHB3|2049|EPH receptor B3##AF209928|CHRD|8646|chordin##AF209929|CHRD|8646|chordin##AF209930|CHRD|8646|chordin##AF283325|CHRD|8646|chordin##NM_003741|CHRD|8646|chordin##AY358926|CHRD|8646|chordin##BC112345|CHRD|8646|chordin##AB208947|CHRD|8646|chordin##AK074147|CHRD|8646|chordin##AK293456|CHRD|8646|chordin##AK295632|CHRD|8646|chordin##NM_001009921|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##NM_015303|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK056661|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##AK292423|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BX647915|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC140768|VPS8|23355|vacuolar protein sorting 8 homolog (S. cerevisiae)##BC137178|C3orf70|285382|chromosome 3 open reading frame 70##BC137179|C3orf70|285382|chromosome 3 open reading frame 70##BC150565|C3orf70|285382|chromosome 3 open reading frame 70	0.0	0.0	
chr6	159288541	159288721	reg1014981.p1	4.327	+	TSC_hg19_v1_chr6_-_159240446 NM_001111077	-48175	-	TSC_hg19_v1_chr6_-_159240401 AK296738	-48218	-	AK312597 TSC_hg19_v1_chr6_-_159240398	-48233	-	NM_001195032	20987	+	TSC_hg19_v1_chr6_-_159420766 BC035675	132138	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	132188	-	NM_001111077|EZR|7430|ezrin##AK296738|EZR|7430|ezrin##AK312597|EZR|7430|ezrin##NM_001195032|C6orf99|100130967|chromosome 6 open reading frame 99##BC035675|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)	0.99818	0.0	denovo_WM_7:6:0.928
chr6	67052233	67052365	reg1010979.p1	4.327	+	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	-635206	-	AY358133 NM_198283 AK310478	-762594	-	AF091622 BC113650 BC113652 NM_015153 D87685 AB385299	-2695857	+	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	1546729	-	AL833240 TSC_hg19_v1_chr6_-_69345026	2292673	-	TSC_hg19_v1_chr6_+_69345227 NM_001704 AB011122 AK289696	2293102	+	FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##AF091622|PHF3|23469|PHD finger protein 3##BC113650|PHF3|23469|PHD finger protein 3##BC113652|PHF3|23469|PHD finger protein 3##NM_015153|PHF3|23469|PHD finger protein 3##D87685|PHF3|23469|PHD finger protein 3##AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3##NM_001704|BAI3|577|brain-specific angiogenesis inhibitor 3##AB011122|BAI3|577|brain-specific angiogenesis inhibitor 3##AK289696|BAI3|577|brain-specific angiogenesis inhibitor 3	0.990819	0.0	denovo_WM_7:-27:0.237	denovo_WM_7:-28:0.237	denovo_WM_7:-29:0.237	denovo_WM_7:-30:0.237
chrX	19776746	19776926	reg1012491.p2	4.327	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-87780	-	NM_001001671	-243458	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-414754	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	41039	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	41076	-	TSC_hg19_v1_chrX_-_19905450 AY542305	128627	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chr10	65021227	65021384	reg1014510.p1	4.326	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	-128159	+	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	-128274	+	AK312813 NM_001136178	-442379	-	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	7610	-	TSC_hg19_v1_chr10_+_65224979 BC007866 AK314171	203679	+	AK027280 EF068222 NM_032776 TSC_hg19_v1_chr10_-_65225738	204373	-	AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C##BC007866|LOC84989|84989|uncharacterized LOC84989##AK314171|LOC84989|84989|uncharacterized LOC84989##AK027280|JMJD1C|221037|jumonji domain containing 1C##EF068222|JMJD1C|221037|jumonji domain containing 1C##NM_032776|JMJD1C|221037|jumonji domain containing 1C	0.903421	0.0	denovo_WM_7:25:0.761
chr18	864900	865027	reg1013942.p2	4.326	+	TSC_hg19_v1_chr18_-_812273 AK314063 BC048960 BC031080 NM_005433	-52660	-	TSC_hg19_v1_chr18_-_712601 NM_202758 X67098 X89602 AK127818 BX648215 AK295850 AK292780 AK309035 BC001285 NM_001126123 NM_017512	-152381	-	AB464497 AK289986 BC028301 NM_001012716	-206671	-	AK313050 NM_001099733	39980	+	NM_001117 BC093837 BC101803 S83513	40378	+	AK290001 BC111020 NM_022840	1706492	-	AK314063|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##BC048960|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##BC031080|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##NM_005433|YES1|7525|v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1##NM_202758|ENOSF1|55556|enolase superfamily member 1##X67098|ENOSF1|55556|enolase superfamily member 1##X89602|ENOSF1|55556|enolase superfamily member 1##AK127818|ENOSF1|55556|enolase superfamily member 1##BX648215|ENOSF1|55556|enolase superfamily member 1##AK295850|ENOSF1|55556|enolase superfamily member 1##AK292780|ENOSF1|55556|enolase superfamily member 1##AK309035|ENOSF1|55556|enolase superfamily member 1##BC001285|ENOSF1|55556|enolase superfamily member 1##NM_001126123|ENOSF1|55556|enolase superfamily member 1##NM_017512|ENOSF1|55556|enolase superfamily member 1##AK289986|C18orf56|494514|chromosome 18 open reading frame 56##BC028301|C18orf56|494514|chromosome 18 open reading frame 56##NM_001012716|C18orf56|494514|chromosome 18 open reading frame 56##AK313050|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##NM_001099733|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##NM_001117|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##BC093837|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##BC101803|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##S83513|ADCYAP1|116|adenylate cyclase activating polypeptide 1 (pituitary)##AK290001|METTL4|64863|methyltransferase like 4##BC111020|METTL4|64863|methyltransferase like 4##NM_022840|METTL4|64863|methyltransferase like 4	0.0	0.138797	
chr2	135003699	135003832	reg1010888.p1	4.326	+	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	-677727	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	-824411	-	AK124659 TSC_hg19_v1_chr2_-_133539761	-1464071	-	NM_002410 D17716 AF113921	8120	+	TSC_hg19_v1_chr2_-_135476571 BC026170 NM_030923	472791	-	AK125008 NM_138326 BC016018 BC107420 AB071418	592453	+	AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##AK092189|NCKAP5|344148|NCK-associated protein 5##AK124659|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##BC026170|TMEM163|81615|transmembrane protein 163##NM_030923|TMEM163|81615|transmembrane protein 163##AK125008|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##NM_138326|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC016018|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##BC107420|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase##AB071418|ACMSD|130013|aminocarboxymuconate semialdehyde decarboxylase	0.998555	0.0	
chr4	47120659	47120727	reg1010670.p2	4.326	+	NM_000812 AK296023	-87346	+	AK090780 NM_000809	-124270	-	CU690038 DQ891679 DQ894864 EU176605 U30461 NM_001204266 NM_001204267 BC035055	-125197	-	TSC_hg19_v1_chr4_-_47465683 AY542163 BC015145 NM_017845 AK000509 BC019826 AF182421	344986	-	TSC_hg19_v1_chr4_-_47465720 BC008371	345035	-	TSC_hg19_v1_chr4_+_47487301 BC057839 BC108723 AJ441078 NM_020453 BC131535	366637	+	NM_000812|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AK296023|GABRB1|2560|gamma-aminobutyric acid (GABA) A receptor, beta 1##AK090780|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_000809|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ891679|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##DQ894864|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##EU176605|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##U30461|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204266|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##NM_001204267|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##BC035055|GABRA4|2557|gamma-aminobutyric acid (GABA) A receptor, alpha 4##AY542163|COMMD8|54951|COMM domain containing 8##BC015145|COMMD8|54951|COMM domain containing 8##NM_017845|COMMD8|54951|COMM domain containing 8##AK000509|COMMD8|54951|COMM domain containing 8##BC019826|COMMD8|54951|COMM domain containing 8##AF182421|COMMD8|54951|COMM domain containing 8##BC008371|COMMD8|54951|COMM domain containing 8##BC057839|ATP10D|57205|ATPase, class V, type 10D##AJ441078|ATP10D|57205|ATPase, class V, type 10D##NM_020453|ATP10D|57205|ATPase, class V, type 10D##BC131535|ATP10D|57205|ATPase, class V, type 10D	0.0	0.0	
chr7	55154871	55155051	reg1009259.p3	4.326	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-68015	+	TSC_hg19_v1_chr7_+_55086710 BC057802 BC094761 HQ912715 NM_005228 NM_201282 NM_201283 NM_201284 AF125253 U48722 X00588 BC070081 AK225422 K03193 AB209442 BC134346	-68216	+	TSC_hg19_v1_chr7_-_54826929 AF054184 AK311845 NM_001012456 NM_014302	-328040	-	AK095857 NM_018697	278179	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	278611	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	485079	-	AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##BC094761|EGFR|1956|epidermal growth factor receptor##HQ912715|EGFR|1956|epidermal growth factor receptor##NM_005228|EGFR|1956|epidermal growth factor receptor##NM_201282|EGFR|1956|epidermal growth factor receptor##NM_201283|EGFR|1956|epidermal growth factor receptor##NM_201284|EGFR|1956|epidermal growth factor receptor##AF125253|EGFR|1956|epidermal growth factor receptor##U48722|EGFR|1956|epidermal growth factor receptor##X00588|EGFR|1956|epidermal growth factor receptor##BC070081|EGFR|1956|epidermal growth factor receptor##AK225422|EGFR|1956|epidermal growth factor receptor##K03193|EGFR|1956|epidermal growth factor receptor##AB209442|EGFR|1956|epidermal growth factor receptor##AF054184|SEC61G|23480|Sec61 gamma subunit##AK311845|SEC61G|23480|Sec61 gamma subunit##NM_001012456|SEC61G|23480|Sec61 gamma subunit##NM_014302|SEC61G|23480|Sec61 gamma subunit##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.984626	0.0	denovo_WM_7:14:0.381
chrX	7919001	7919138	reg1013132.p2	4.326	+	AK304586 TSC_hg19_v1_chrX_-_7895766 NM_001142389 NM_001172672	-23298	-	AK289888 U03886 NM_004650 BC020746	-23619	-	AF167081 NM_013452	-108767	+	AF167079 NM_016378	220238	-	AF167078 AF167080 NM_001001888	513801	+	X60299 TSC_hg19_v1_chrX_-_8700155	781074	-	AK304586|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001142389|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001172672|PNPLA4|8228|patatin-like phospholipase domain containing 4##AK289888|PNPLA4|8228|patatin-like phospholipase domain containing 4##U03886|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_004650|PNPLA4|8228|patatin-like phospholipase domain containing 4##BC020746|PNPLA4|8228|patatin-like phospholipase domain containing 4##AF167081|VCX|26609|variable charge, X-linked##NM_013452|VCX|26609|variable charge, X-linked##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016378|VCX2|51480|variable charge, X-linked 2##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167080|VCX3B|425054|variable charge, X-linked 3B##NM_001001888|VCX3B|425054|variable charge, X-linked 3B##X60299|KAL1|3730|Kallmann syndrome 1 sequence	0.0	0.0	
chr17	726878	727058	reg1005749.p2	4.325	+	BC011550 TSC_hg19_v1_chr17_+_685611 BC050614 AK225128 AB590841 CU679954 CU690740	-41354	+	AF177344 NM_018146 TSC_hg19_v1_chr17_+_685592 AK001443 AK222900	-41410	+	TSC_hg19_v1_chr17_-_685521 AK226083 AK292315 BC008605 CU677471 AK296584 AF061730 AF177342 AK301751 BC010902 BC015848 AK001488 AF177343 NM_016080	-41488	-	BC009327 AK302073 NM_001205319	40350	-	TSC_hg19_v1_chr17_-_882986 AB590045 NM_022463	156032	-	TSC_hg19_v1_chr17_+_900368 BC002324 NM_013337 AK000830 AK225453 AF155330	173387	+	BC011550|RNMTL1|55178|RNA methyltransferase like 1##BC050614|RNMTL1|55178|RNA methyltransferase like 1##AK225128|RNMTL1|55178|RNA methyltransferase like 1##AF177344|RNMTL1|55178|RNA methyltransferase like 1##NM_018146|RNMTL1|55178|RNA methyltransferase like 1##AK001443|RNMTL1|55178|RNA methyltransferase like 1##AK222900|RNMTL1|55178|RNA methyltransferase like 1##AK226083|GLOD4|51031|glyoxalase domain containing 4##AK292315|GLOD4|51031|glyoxalase domain containing 4##BC008605|GLOD4|51031|glyoxalase domain containing 4##AK296584|GLOD4|51031|glyoxalase domain containing 4##AF061730|GLOD4|51031|glyoxalase domain containing 4##AF177342|GLOD4|51031|glyoxalase domain containing 4##AK301751|GLOD4|51031|glyoxalase domain containing 4##BC010902|GLOD4|51031|glyoxalase domain containing 4##BC015848|GLOD4|51031|glyoxalase domain containing 4##AK001488|GLOD4|51031|glyoxalase domain containing 4##AF177343|GLOD4|51031|glyoxalase domain containing 4##NM_016080|GLOD4|51031|glyoxalase domain containing 4##BC009327|NXN|64359|nucleoredoxin##AK302073|NXN|64359|nucleoredoxin##NM_001205319|NXN|64359|nucleoredoxin##NM_022463|NXN|64359|nucleoredoxin##BC002324|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##NM_013337|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK000830|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK225453|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AF155330|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)	0.0	0.0	
chr2	133736653	133736794	reg1002619.p2	4.325	+	AK124659 TSC_hg19_v1_chr2_-_133539761	-197029	-	NM_001077427 AK309668	-307613	-	NM_144586	-308243	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	442631	-	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	589315	-	NM_002410 D17716 AF113921	1275162	+	AK124659|NCKAP5|344148|NCK-associated protein 5##NM_001077427|LYPD1|116372|LY6/PLAUR domain containing 1##AK309668|LYPD1|116372|LY6/PLAUR domain containing 1##NM_144586|LYPD1|116372|LY6/PLAUR domain containing 1##AK092189|NCKAP5|344148|NCK-associated protein 5##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	0.13888	0.0	
chr2	17697056	17697231	reg1013129.p1	4.325	+	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	-849999	-	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-1614976	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-1615148	+	DQ860102 NM_001099218	2562	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	24744	+	TSC_hg19_v1_chr2_+_17721989 AF039555 U14747 AB001104	24877	+	BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1##AF039555|VSNL1|7447|visinin-like 1##U14747|VSNL1|7447|visinin-like 1##AB001104|VSNL1|7447|visinin-like 1	0.121247	0.0	
chr4	146857732	146857912	reg1003826.p2	4.325	+	NM_001080531	-256467	+	TSC_hg19_v1_chr4_+_146540536 AK126662 NM_172250	-317276	+	U59912 NM_001003688 U54826 AK293055	-453864	+	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	1855	-	BC033879 TSC_hg19_v1_chr4_-_146859976	2146	-	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	239045	+	NM_001080531|C4orf51|646603|chromosome 4 open reading frame 51##AK126662|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##NM_172250|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##U59912|SMAD1|4086|SMAD family member 1##NM_001003688|SMAD1|4086|SMAD family member 1##U54826|SMAD1|4086|SMAD family member 1##AK293055|SMAD1|4086|SMAD family member 1##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.0	0.0	
chr8	23347476	23347589	reg1013930.p1	4.325	+	TSC_hg19_v1_chr8_-_23315197 BC034477 NM_001128930 NM_004901	-32319	-	AJ131358 TSC_hg19_v1_chr8_-_23315161 AK300464 AF016032	-32378	-	TSC_hg19_v1_chr8_-_23261684 NM_002318	-85834	-	NM_016612 TSC_hg19_v1_chr8_+_23386375	38838	+	TSC_hg19_v1_chr8_+_23386395 BC132799 BC132801	38882	+	AK074708 AK223194 AF223466 AY032628 BC015013 TSC_hg19_v1_chr8_+_23386513 HQ258387 AK075313 AL833186	38991	+	BC034477|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##NM_001128930|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##NM_004901|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##AJ131358|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##AK300464|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##AF016032|ENTPD4|9583|ectonucleoside triphosphate diphosphohydrolase 4##NM_002318|LOXL2|4017|lysyl oxidase-like 2##NM_016612|SLC25A37|51312|solute carrier family 25, member 37##BC132799|SLC25A37|51312|solute carrier family 25, member 37##BC132801|SLC25A37|51312|solute carrier family 25, member 37##AK074708|SLC25A37|51312|solute carrier family 25, member 37##AK223194|SLC25A37|51312|solute carrier family 25, member 37##AF223466|SLC25A37|51312|solute carrier family 25, member 37##AY032628|SLC25A37|51312|solute carrier family 25, member 37##BC015013|SLC25A37|51312|solute carrier family 25, member 37##HQ258387|SLC25A37|51312|solute carrier family 25, member 37##AK075313|SLC25A37|51312|solute carrier family 25, member 37##AL833186|SLC25A37|51312|solute carrier family 25, member 37	0.0	0.0	
chr13	95938077	95938257	reg1009155.p1	4.324	+	X65666 X71136 AB464716 NM_007084	-573849	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-684065	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-689671	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	15545	-	NM_001160100 NM_182848 AK055855	147687	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	266807	+	X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10	0.0	0.0	
chr16	4303446	4303529	reg1008718.p1	4.324	+	AL831973 AL832361 BX647476 AK056588 NM_001098814	-11421	-	AJ133123 NM_001116 TSC_hg19_v1_chr16_-_4166252	-137257	-	BC151207 AB011092 BC151229 TSC_hg19_v1_chr16_-_4166045	-137453	-	TSC_hg19_v1_chr16_-_4303791 AK094828	294	-	X57435 DQ893617 DQ895293 CR541726 CU679751 AB464303 TSC_hg19_v1_chr16_-_4322885 BC010576	19341	-	NM_003223 S73885 TSC_hg19_v1_chr16_-_4323025	19525	-	AL831973|SRL|6345|sarcalumenin##AL832361|SRL|6345|sarcalumenin##BX647476|SRL|6345|sarcalumenin##AK056588|SRL|6345|sarcalumenin##NM_001098814|SRL|6345|sarcalumenin##AJ133123|ADCY9|115|adenylate cyclase 9##NM_001116|ADCY9|115|adenylate cyclase 9##BC151207|ADCY9|115|adenylate cyclase 9##AB011092|ADCY9|115|adenylate cyclase 9##BC151229|ADCY9|115|adenylate cyclase 9##AK094828|LOC100507501|100507501|uncharacterized LOC100507501##X57435|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ893617|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ895293|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##CR541726|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##BC010576|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##NM_003223|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##S73885|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)	0.0	0.0	
chr6	130340045	130340212	reg1009935.p2	4.324	+	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	-403	+	NM_001010876	-157713	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	-308802	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	196327	-	AK091882 AX747235 NM_001017373	203970	-	AB052099 NM_052913	418133	+	AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A	0.206697	0.0	
chr7	2347219	2347350	reg1008623.p1	4.324	+	BC065367 AB025238 AB025239 AB025242 NM_198953 NM_198954 BC022818 BC040144 CU677071	-64751	+	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	-65409	+	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	-65451	-	TSC_hg19_v1_chr7_-_2354018 BC007785	6740	-	TSC_hg19_v1_chr7_-_2354077 CU692368 DQ892508 DQ895722 AK074544 AF121858 AK315670 BC021565 NM_013321	6790	-	TSC_hg19_v1_chr7_+_2394488 NM_001037283 NM_003751 AK302058	47178	+	BC065367|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025238|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025239|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025242|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198953|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198954|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC022818|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC040144|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC007785|SNX8|29886|sorting nexin 8##DQ892508|SNX8|29886|sorting nexin 8##DQ895722|SNX8|29886|sorting nexin 8##AK074544|SNX8|29886|sorting nexin 8##AF121858|SNX8|29886|sorting nexin 8##AK315670|SNX8|29886|sorting nexin 8##BC021565|SNX8|29886|sorting nexin 8##NM_013321|SNX8|29886|sorting nexin 8##NM_001037283|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##NM_003751|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK302058|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B	0.999104	0.0	
chr10	7534012	7534124	reg1015333.p1	4.323	+	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	-80634	-	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	-82818	-	TSC_hg19_v1_chr10_+_6622460 AY007155	-911588	+	AK027849 TSC_hg19_v1_chr10_-_7659249	125149	-	BC004282 NM_032817	127556	-	AK027831 AB075833 TSC_hg19_v1_chr10_-_7682819	148712	-	BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##AY007155|LOC439949|439949|uncharacterized LOC439949##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##BC004282|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##NM_032817|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AK027831|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5##AB075833|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	0.986128	0.0	denovo_WM_7:-46:0.642	denovo_WM_7:-48:0.202
chr1	20539264	20539374	reg1000349.p1	4.323	+	BC047428 NM_152376 BX648631 AK058158 TSC_hg19_v1_chr1_+_20512591	-26735	+	NM_001105572	-37633	-	TSC_hg19_v1_chr1_+_20480706 BC041651	-58556	+	NM_001039500 AK125833	78101	+	AY204901 TSC_hg19_v1_chr1_-_20812323	272979	-	NM_018584 TSC_hg19_v1_chr1_-_20812743	273462	-	BC047428|UBXN10|127733|UBX domain protein 10##NM_152376|UBXN10|127733|UBX domain protein 10##BX648631|UBXN10|127733|UBX domain protein 10##AK058158|UBXN10|127733|UBX domain protein 10##NM_001105572|PLA2G2C|391013|phospholipase A2, group IIC##NM_001039500|VWA5B1|127731|von Willebrand factor A domain containing 5B1##AK125833|VWA5B1|127731|von Willebrand factor A domain containing 5B1##AY204901|CAMK2N1|55450|calcium/calmodulin-dependent protein kinase II inhibitor 1##NM_018584|CAMK2N1|55450|calcium/calmodulin-dependent protein kinase II inhibitor 1	0.0	0.0	
chr2	219080199	219080304	reg1013232.p1	4.323	+	M68932 BC072397 BC028221 AK309632 AK312668 U11871 L19591 NM_000634 AK298647	-48566	-	NM_001557 U11874 L19593 U11875 BC037961 AK290906 AK312664	-89462	+	U11872 NM_001168298	-90247	+	TSC_hg19_v1_chr2_+_219081867 NM_152862	1618	+	TSC_hg19_v1_chr2_+_219081905 U50523	1651	+	TSC_hg19_v1_chr2_+_219081914 AK290268 BC000590	1682	+	BC072397|CXCR1|3577|chemokine (C-X-C motif) receptor 1##BC028221|CXCR1|3577|chemokine (C-X-C motif) receptor 1##AK309632|CXCR1|3577|chemokine (C-X-C motif) receptor 1##AK312668|CXCR1|3577|chemokine (C-X-C motif) receptor 1##U11871|CXCR1|3577|chemokine (C-X-C motif) receptor 1##L19591|CXCR1|3577|chemokine (C-X-C motif) receptor 1##NM_000634|CXCR1|3577|chemokine (C-X-C motif) receptor 1##AK298647|CXCR1|3577|chemokine (C-X-C motif) receptor 1##NM_001557|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11874|CXCR2|3579|chemokine (C-X-C motif) receptor 2##L19593|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11875|CXCR2|3579|chemokine (C-X-C motif) receptor 2##BC037961|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK290906|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK312664|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11872|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001168298|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_152862|ARPC2|10109|actin related protein 2/3 complex, subunit 2, 34kDa##U50523|ARPC2|10109|actin related protein 2/3 complex, subunit 2, 34kDa##AK290268|ARPC2|10109|actin related protein 2/3 complex, subunit 2, 34kDa##BC000590|ARPC2|10109|actin related protein 2/3 complex, subunit 2, 34kDa	0.998688	0.0	
chr3	152231247	152231369	reg1012532.p1	4.323	+	AY358260 NM_001123228	-172530	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	-214115	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	-243963	-	NM_002563 Z49205	321427	+	TSC_hg19_v1_chr3_+_152880029 NM_002886	648718	+	TSC_hg19_v1_chr3_+_152880058 BC012362	648740	+	AY358260|TMEM14E|645843|transmembrane protein 14E##NM_001123228|TMEM14E|645843|transmembrane protein 14E##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_002563|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##Z49205|P2RY1|5028|purinergic receptor P2Y, G-protein coupled, 1##NM_002886|RAP2B|5912|RAP2B, member of RAS oncogene family##BC012362|RAP2B|5912|RAP2B, member of RAS oncogene family	0.012771	0.0	
chr5	156543772	156543896	reg1011159.p1	4.323	+	TSC_hg19_v1_chr5_-_156536188 NM_032782	-7618	-	AK027334 TSC_hg19_v1_chr5_-_156536052 AF450242 AF450243 AK314406 BC020843 AF251707 BC063431	-7731	-	AY069944 CU687712 TSC_hg19_v1_chr5_-_156536016	-7823	-	NM_001100816 TSC_hg19_v1_chr5_-_156569881 AK123613 AF031383 BC005250 BC006968 AK308393 NM_004270	26018	-	AY973323 CU692472 AF465821 BC025397 AK057543 BC022035 BC025409 BC025998 NM_130899	49394	-	BC094701 AB209622 D13720 NM_005546 BC109077 BC109078 AK312846 AK303609 AB590549	64083	+	NM_032782|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK027334|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450242|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF450243|HAVCR2|84868|hepatitis A virus cellular receptor 2##AK314406|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC020843|HAVCR2|84868|hepatitis A virus cellular receptor 2##AF251707|HAVCR2|84868|hepatitis A virus cellular receptor 2##BC063431|HAVCR2|84868|hepatitis A virus cellular receptor 2##AY069944|HAVCR2|84868|hepatitis A virus cellular receptor 2##NM_001100816|MED7|9443|mediator complex subunit 7##AF031383|MED7|9443|mediator complex subunit 7##BC005250|MED7|9443|mediator complex subunit 7##BC006968|MED7|9443|mediator complex subunit 7##AK308393|MED7|9443|mediator complex subunit 7##NM_004270|MED7|9443|mediator complex subunit 7##AY973323|FAM71B|153745|family with sequence similarity 71, member B##AF465821|FAM71B|153745|family with sequence similarity 71, member B##BC025397|FAM71B|153745|family with sequence similarity 71, member B##AK057543|FAM71B|153745|family with sequence similarity 71, member B##BC022035|FAM71B|153745|family with sequence similarity 71, member B##BC025409|FAM71B|153745|family with sequence similarity 71, member B##BC025998|FAM71B|153745|family with sequence similarity 71, member B##NM_130899|FAM71B|153745|family with sequence similarity 71, member B##AB209622|ITK|3702|IL2-inducible T-cell kinase##D13720|ITK|3702|IL2-inducible T-cell kinase##NM_005546|ITK|3702|IL2-inducible T-cell kinase##BC109077|ITK|3702|IL2-inducible T-cell kinase##BC109078|ITK|3702|IL2-inducible T-cell kinase##AK312846|ITK|3702|IL2-inducible T-cell kinase##AK303609|ITK|3702|IL2-inducible T-cell kinase	0.987051	0.0	denovo_WM_7:-47:0.702
chr8	12432833	12432992	reg1012668.p2	4.323	+	BC085016 TSC_hg19_v1_chr8_-_12293910 AK291001 AK298940	-139008	-	AK309984 NM_001137610 AK098138 AK308513 TSC_hg19_v1_chr8_-_12293868 AK297741 AK308439	-139069	-	DQ012022 NM_001037804 NM_001195257	-257088	-	TSC_hg19_v1_chr8_-_12612974 NM_152271	180092	-	AK296010 NM_020844	370254	+	AB040889 NM_001099677	436860	+	BC085016|FAM86B1|85002|family with sequence similarity 86, member B1##AK291001|FAM86B2|653333|family with sequence similarity 86, member B2##AK298940|FAM86B2|653333|family with sequence similarity 86, member B2##AK309984|FAM86B2|653333|family with sequence similarity 86, member B2##NM_001137610|FAM86B2|653333|family with sequence similarity 86, member B2##AK098138|FAM86B1|85002|family with sequence similarity 86, member B1##AK308513|FAM86B1|85002|family with sequence similarity 86, member B1##AK297741|FAM86B2|653333|family with sequence similarity 86, member B2##AK308439|FAM86B1|85002|family with sequence similarity 86, member B1##DQ012022|DEFB130|245940|defensin, beta 130##NM_001037804|DEFB130|245940|defensin, beta 130##NM_001195257|LOC100133267|100133267|defensin, beta 130-like##NM_152271|LONRF1|91694|LON peptidase N-terminal domain and ring finger 1##AK296010|KIAA1456|57604|KIAA1456##NM_020844|KIAA1456|57604|KIAA1456##AB040889|KIAA1456|57604|KIAA1456##NM_001099677|KIAA1456|57604|KIAA1456	0.0	0.0	
chr1	156087716	156087896	reg1013948.p1	4.322	+	TSC_hg19_v1_chr1_+_156084585 AY528714 AB527090 EU831758 EU831836 EU832167 EU832261 CU677029 CU678414 AY847595 AY847596 AY847597	-3162	+	TSC_hg19_v1_chr1_+_156084568 M13451	-3236	+	TSC_hg19_v1_chr1_+_156084553 BC003162 AK130179	-3255	+	NM_001193301 AY358531	31965	+	NM_001193300 NM_022367 AK296693 TSC_hg19_v1_chr1_+_156123375 AK091127 AK290353 AX746794 NM_001193302 AK315547 BX640891 BC020974	35548	+	TSC_hg19_v1_chr1_+_156163725 NM_014655	75932	+	AY528714|LMNA|4000|lamin A/C##EU831758|LMNA|4000|lamin A/C##EU831836|LMNA|4000|lamin A/C##EU832167|LMNA|4000|lamin A/C##EU832261|LMNA|4000|lamin A/C##AY847595|LMNA|4000|lamin A/C##AY847596|LMNA|4000|lamin A/C##AY847597|LMNA|4000|lamin A/C##M13451|LMNA|4000|lamin A/C##BC003162|LMNA|4000|lamin A/C##AK130179|LMNA|4000|lamin A/C##NM_001193301|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AY358531|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193300|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_022367|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK296693|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK091127|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK290353|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193302|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK315547|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BX640891|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BC020974|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_014655|SLC25A44|9673|solute carrier family 25, member 44	1.426748	0.0	denovo_WM_7:-21:0.333	denovo_WM_7:-36:0.231	denovo_WM_7:-37:0.246
chr12	120971801	120971963	reg1008018.p1	4.322	+	BC004916 AB590926 TSC_hg19_v1_chr12_-_120966955 BX647562 AK057777 AK222610 AK225242 BC107874 AK315681 EU700459 AK298214 NM_032314 AK293656	-4921	-	TSC_hg19_v1_chr12_+_120933916 BC100289 U32944 BC104244 BC104245	-37948	+	TSC_hg19_v1_chr12_+_120933915 AK311790 AK309022	-37969	+	TSC_hg19_v1_chr12_+_120972153 NM_014868 AK315558	246	+	AK094011 AK097807 TSC_hg19_v1_chr12_+_120972158 AK126274 AK301608 AB027196 BC016622 BC031596 BC101709 BC101715 BC143493 BT006974 CU677651 D87451 DQ890634 DQ893805	618	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	47306	-	BC004916|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BX647562|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK057777|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK222610|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK225242|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BC107874|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK315681|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##EU700459|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK298214|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##NM_032314|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##AK293656|COQ5|84274|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)##BC100289|DYNLL1|8655|dynein, light chain, LC8-type 1##U32944|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104244|DYNLL1|8655|dynein, light chain, LC8-type 1##BC104245|DYNLL1|8655|dynein, light chain, LC8-type 1##AK311790|DYNLL1|8655|dynein, light chain, LC8-type 1##NM_014868|RNF10|9921|ring finger protein 10##AK315558|RNF10|9921|ring finger protein 10##AK094011|RNF10|9921|ring finger protein 10##AK097807|RNF10|9921|ring finger protein 10##AK126274|RNF10|9921|ring finger protein 10##AK301608|RNF10|9921|ring finger protein 10##AB027196|RNF10|9921|ring finger protein 10##BC016622|RNF10|9921|ring finger protein 10##BC031596|RNF10|9921|ring finger protein 10##BC101709|RNF10|9921|ring finger protein 10##BC101715|RNF10|9921|ring finger protein 10##BC143493|RNF10|9921|ring finger protein 10##BT006974|RNF10|9921|ring finger protein 10##D87451|RNF10|9921|ring finger protein 10##DQ890634|RNF10|9921|ring finger protein 10##DQ893805|RNF10|9921|ring finger protein 10##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)	0.995951	0.0	denovo_WM_7:-66:0.815
chr12	43156889	43157028	reg1015383.p2	4.322	+	BC114939 BC114940 AF399844 AF543759 AF543760 AK056499 TSC_hg19_v1_chr12_-_42983549 NM_153026	-173466	-	TSC_hg19_v1_chr12_-_42877811 NM_001144882 NM_001144883	-279159	-	AK122881 TSC_hg19_v1_chr12_-_42877772	-279200	-	AF488804 AJ515153 AJ515154 NM_025003	788765	-	AL136759 TSC_hg19_v1_chr12_-_44152566 BX647494 NM_001098615 AK097331 AK225903 NM_001098614 BC020781 CR627435 BC068502 AK092030 AX747323 NM_031292	995617	-	AK304583 NM_001114182 NM_001145256 NM_001145257 NM_001145258 NM_016123 AK299944 AK314288 TSC_hg19_v1_chr12_+_44152757	995793	+	BC114939|PRICKLE1|144165|prickle homolog 1 (Drosophila)##BC114940|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF399844|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543759|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF543760|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK056499|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_153026|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144882|PRICKLE1|144165|prickle homolog 1 (Drosophila)##NM_001144883|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AK122881|PRICKLE1|144165|prickle homolog 1 (Drosophila)##AF488804|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AJ515153|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AJ515154|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##NM_025003|ADAMTS20|80070|ADAM metallopeptidase with thrombospondin type 1 motif, 20##AL136759|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BX647494|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_001098615|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK097331|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK225903|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_001098614|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BC020781|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##CR627435|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##BC068502|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK092030|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##NM_031292|PUS7L|83448|pseudouridylate synthase 7 homolog (S. cerevisiae)-like##AK304583|IRAK4|51135|interleukin-1 receptor-associated kinase 4##NM_001114182|IRAK4|51135|interleukin-1 receptor-associated kinase 4##NM_001145256|IRAK4|51135|interleukin-1 receptor-associated kinase 4##NM_001145257|IRAK4|51135|interleukin-1 receptor-associated kinase 4##NM_001145258|IRAK4|51135|interleukin-1 receptor-associated kinase 4##NM_016123|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK299944|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK314288|IRAK4|51135|interleukin-1 receptor-associated kinase 4	0.086421	0.0	
chr19	50682420	50682597	reg1005644.p2	4.322	+	DQ890967 DQ894140 AK307321 BC029535 AY358196 AB590459 AK131024 NM_152358	-16100	-	TSC_hg19_v1_chr19_+_50529309 AK292452	-153185	+	TSC_hg19_v1_chr19_+_50529276 AK302293 BC018612 BX648093	-153224	+	TSC_hg19_v1_chr19_+_50691445 AK125082	8933	+	TSC_hg19_v1_chr19_+_50706878 AY165122 BC129803 NM_001077186 NM_001145809 NM_024729 AK307783 AB290169	24383	+	BC018933 TSC_hg19_v1_chr19_+_50713879	31343	+	DQ890967|IZUMO2|126123|IZUMO family member 2##DQ894140|IZUMO2|126123|IZUMO family member 2##AK307321|IZUMO2|126123|IZUMO family member 2##BC029535|IZUMO2|126123|IZUMO family member 2##AY358196|IZUMO2|126123|IZUMO family member 2##AK131024|IZUMO2|126123|IZUMO family member 2##NM_152358|IZUMO2|126123|IZUMO family member 2##AK292452|ZNF473|25888|zinc finger protein 473##AK302293|ZNF473|25888|zinc finger protein 473##BC018612|ZNF473|25888|zinc finger protein 473##BX648093|ZNF473|25888|zinc finger protein 473##AK125082|MYH14|79784|myosin, heavy chain 14, non-muscle##AY165122|MYH14|79784|myosin, heavy chain 14, non-muscle##BC129803|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001077186|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_001145809|MYH14|79784|myosin, heavy chain 14, non-muscle##NM_024729|MYH14|79784|myosin, heavy chain 14, non-muscle##AK307783|MYH14|79784|myosin, heavy chain 14, non-muscle##AB290169|MYH14|79784|myosin, heavy chain 14, non-muscle##BC018933|MYH14|79784|myosin, heavy chain 14, non-muscle	0.0	0.0	
chr11	118763149	118763329	reg1014492.p2	4.321	+	AK291512 NM_001716 BC110352 X68149 AB464488	-8679	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-101305	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-101360	-	NM_032966 X68829	861	+	AB094091 NM_182557	18373	-	NM_006760 Y13645 BC113900 AY455312 AB009454	63824	+	AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2	0.0	0.0	
chr1	220267292	220267370	reg1009223.p2	4.321	+	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	-4157	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	-4210	-	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-47395	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	121	+	TSC_hg19_v1_chr1_+_220267495 AY952883 D28500 AK291432 BC040376	275	+	AB020646 BC146760 TSC_hg19_v1_chr1_-_220445745 BC050630 AF004828 BC131573	178381	-	AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AY952883|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##D28500|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AK291432|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC040376|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AB020646|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC146760|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC050630|AURKAPS1|6791|aurora kinase A pseudogene 1##AF004828|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC131573|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)	0.978134	0.102294	denovo_WM_7:-84:0.341	denovo_WM_7:-85:0.589
chr13	31736786	31736934	reg1009247.p2	4.321	+	AB003333 TSC_hg19_v1_chr13_-_31736042 BC037553 AB003334 D86956 BC018124 AK314576 AK293955 NM_006644 AK302294 AK303029 AK311464 AK307597	-757	-	CU691504 DQ891727 DQ894904 AF039695 TSC_hg19_v1_chr13_-_31735849	-1066	-	TSC_hg19_v1_chr13_+_31506809 BC030277 NM_152325 CU688876	-230030	+	TSC_hg19_v1_chr13_+_31774111 NM_194318	37243	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	37350	+	NM_001166058 NM_130806 AF453828 AB527208 AY899851	576853	+	AB003333|HSPH1|10808|heat shock 105kDa/110kDa protein 1##BC037553|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AB003334|HSPH1|10808|heat shock 105kDa/110kDa protein 1##D86956|HSPH1|10808|heat shock 105kDa/110kDa protein 1##BC018124|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK314576|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK293955|HSPH1|10808|heat shock 105kDa/110kDa protein 1##NM_006644|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK302294|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK303029|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK311464|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK307597|HSPH1|10808|heat shock 105kDa/110kDa protein 1##DQ891727|HSPH1|10808|heat shock 105kDa/110kDa protein 1##DQ894904|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AF039695|HSPH1|10808|heat shock 105kDa/110kDa protein 1##BC030277|C13orf26|122046|chromosome 13 open reading frame 26##NM_152325|C13orf26|122046|chromosome 13 open reading frame 26##NM_194318|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2	0.77225	0.0	denovo_WM_7:-9:0.696
chr16	12684852	12685022	reg1014205.p2	4.321	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-614364	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-625853	+	NM_001130007	-674419	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	212714	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	212782	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	310531	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	1.997535	0.0	denovo_WM_7:-38:0.920	denovo_WM_7:-53:0.951
chr4	129839084	129839247	reg1014392.p2	4.321	+	TSC_hg19_v1_chr4_+_129732427 BC032376	-106712	+	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	-108295	+	AK131272 NM_006320	-629182	-	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	175425	-	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	175702	+	NM_001099783	178116	+	BC032376|PHF17|79960|PHD finger protein 17##NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33	0.0	0.0	
chr8	72166419	72166556	reg1012091.p1	4.321	+	AY534247 BC111381 NM_001011720 BC151845 BC137104 BC137105	-584847	+	TSC_hg19_v1_chr8_-_71581419 BC000878 BC008505 NM_016027	-585038	-	CU674436 EU831796 EU831873 TSC_hg19_v1_chr8_-_71581401 AF151841 AK222699 AK290201	-585103	-	AF467247 BC121798 BC121799 AJ000097 NM_172058 NM_172059 NM_172060	102362	-	AK127798 AK295897 TSC_hg19_v1_chr8_-_72274006	107498	-	TSC_hg19_v1_chr8_-_72274302 AK307379	107806	-	AY534247|XKR9|389668|XK, Kell blood group complex subunit-related family, member 9##BC111381|XKR9|389668|XK, Kell blood group complex subunit-related family, member 9##NM_001011720|XKR9|389668|XK, Kell blood group complex subunit-related family, member 9##BC151845|XKR9|389668|XK, Kell blood group complex subunit-related family, member 9##BC137104|XKR9|389668|XK, Kell blood group complex subunit-related family, member 9##BC137105|XKR9|389668|XK, Kell blood group complex subunit-related family, member 9##BC000878|LACTB2|51110|lactamase, beta 2##BC008505|LACTB2|51110|lactamase, beta 2##NM_016027|LACTB2|51110|lactamase, beta 2##EU831796|LACTB2|51110|lactamase, beta 2##EU831873|LACTB2|51110|lactamase, beta 2##AF151841|LACTB2|51110|lactamase, beta 2##AK222699|LACTB2|51110|lactamase, beta 2##AK290201|LACTB2|51110|lactamase, beta 2##AF467247|EYA1|2138|eyes absent homolog 1 (Drosophila)##BC121798|EYA1|2138|eyes absent homolog 1 (Drosophila)##BC121799|EYA1|2138|eyes absent homolog 1 (Drosophila)##AJ000097|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_172058|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_172059|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_172060|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK127798|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK295897|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK307379|EYA1|2138|eyes absent homolog 1 (Drosophila)	1.983179	0.0	denovo_WM_7:0:0.987	denovo_WM_7:14:0.982
chr1	117544266	117544367	reg1012784.p2	4.320	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	-91674	+	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	-247209	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-333933	-	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	89	+	AK291017 TSC_hg19_v1_chr1_+_117602939	58608	+	TSC_hg19_v1_chr1_+_117602948 AF073771 NM_003594 AF080255 BC015341 BC030058	58638	+	AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule##AK291017|TTF2|8458|transcription termination factor, RNA polymerase II##AF073771|TTF2|8458|transcription termination factor, RNA polymerase II##NM_003594|TTF2|8458|transcription termination factor, RNA polymerase II##AF080255|TTF2|8458|transcription termination factor, RNA polymerase II##BC015341|TTF2|8458|transcription termination factor, RNA polymerase II##BC030058|TTF2|8458|transcription termination factor, RNA polymerase II	0.0	0.0	
chr15	48938038	48938218	reg1002836.p2	4.320	+	TSC_hg19_v1_chr15_-_48937907 BC146854 AK304737 BC094721 NM_000138 X63556	-199	-	TSC_hg19_v1_chr15_-_48937070 L13923	-1045	-	TSC_hg19_v1_chr15_+_48624363 AK291515 NM_001948 AK312122 U31930 U62891 L11877 AB049113 M89913 DQ891191 DQ894375 CR541720 CR541781	-313727	+	BC117182 TSC_hg19_v1_chr15_-_49103277 AB020719 BC069186 AK303805 BX648822 BC107721 NM_001194998 NM_014985	165134	-	TSC_hg19_v1_chr15_+_49170330 NM_014335 BC114944 BC114946 AK315365 AF092135 AF109873 AF349444 AK098383 AL109701 BC024151 AL357456 BC007944 AB527924 AF274951	232244	+	BC033907 NM_203349	317512	-	BC146854|FBN1|2200|fibrillin 1##AK304737|FBN1|2200|fibrillin 1##BC094721|FBN1|2200|fibrillin 1##NM_000138|FBN1|2200|fibrillin 1##X63556|FBN1|2200|fibrillin 1##L13923|FBN1|2200|fibrillin 1##AK291515|DUT|1854|deoxyuridine triphosphatase##NM_001948|DUT|1854|deoxyuridine triphosphatase##AK312122|DUT|1854|deoxyuridine triphosphatase##U31930|DUT|1854|deoxyuridine triphosphatase##U62891|DUT|1854|deoxyuridine triphosphatase##L11877|DUT|1854|deoxyuridine triphosphatase##AB049113|DUT|1854|deoxyuridine triphosphatase##M89913|DUT|1854|deoxyuridine triphosphatase##DQ891191|DUT|1854|deoxyuridine triphosphatase##DQ894375|DUT|1854|deoxyuridine triphosphatase##CR541720|DUT|1854|deoxyuridine triphosphatase##CR541781|DUT|1854|deoxyuridine triphosphatase##BC117182|CEP152|22995|centrosomal protein 152kDa##AB020719|CEP152|22995|centrosomal protein 152kDa##BC069186|CEP152|22995|centrosomal protein 152kDa##AK303805|CEP152|22995|centrosomal protein 152kDa##BX648822|CEP152|22995|centrosomal protein 152kDa##BC107721|CEP152|22995|centrosomal protein 152kDa##NM_001194998|CEP152|22995|centrosomal protein 152kDa##NM_014985|CEP152|22995|centrosomal protein 152kDa##NM_014335|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC114946|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK315365|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF092135|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF109873|EID1|23741|EP300 interacting inhibitor of differentiation 1##AF349444|EID1|23741|EP300 interacting inhibitor of differentiation 1##AK098383|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL109701|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC024151|EID1|23741|EP300 interacting inhibitor of differentiation 1##AL357456|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC007944|EID1|23741|EP300 interacting inhibitor of differentiation 1##BC033907|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##NM_203349|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4	0.0	0.0	
chr16	68544233	68544335	reg1013736.p1	4.320	+	TSC_hg19_v1_chr16_-_68482409 AK289651 NM_018667 BC041828	-61803	-	TSC_hg19_v1_chr16_+_68344946 NM_001184824 NM_019023 AK001502 AK304605 AK056647	-199325	+	TSC_hg19_v1_chr16_-_68344850 BC013778 AK023353 AK091674 AK225712 AY078070 NM_032178	-199458	-	TSC_hg19_v1_chr16_+_68564035 BC040871	19749	+	BC140886 BC140887 TSC_hg19_v1_chr16_+_68573199 AX721106 AX721146 AK316251 AK074332 AK304152 BC040486	28914	+	NM_133458	29376	+	AK289651|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_018667|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC041828|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_001184824|PRMT7|54496|protein arginine methyltransferase 7##NM_019023|PRMT7|54496|protein arginine methyltransferase 7##AK001502|PRMT7|54496|protein arginine methyltransferase 7##AK304605|PRMT7|54496|protein arginine methyltransferase 7##AK056647|PRMT7|54496|protein arginine methyltransferase 7##BC013778|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK023353|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK091674|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK225712|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AY078070|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_032178|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##BC040871|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC140886|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC140887|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK316251|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK074332|ZFP90|146198|zinc finger protein 90 homolog (mouse)##AK304152|ZFP90|146198|zinc finger protein 90 homolog (mouse)##BC040486|ZFP90|146198|zinc finger protein 90 homolog (mouse)##NM_133458|ZFP90|146198|zinc finger protein 90 homolog (mouse)	0.0	0.944044	CTCF.p2:-33:0.944
chr17	54991914	54992003	reg1006149.p2	4.320	+	TSC_hg19_v1_chr17_-_54991410 NM_005082	-553	-	AB384815 TSC_hg19_v1_chr17_-_54991388 D21205 AB208994 BC016924 BC042541	-586	-	TSC_hg19_v1_chr17_+_54911515 NM_003647 BC022297 AK310668 AK293039 U49379	-80454	+	CU679689 DQ892927 DQ896176 TSC_hg19_v1_chr17_-_55038404 AK313616 U06632 BC010385 NM_004645	46443	-	NM_021626 TSC_hg19_v1_chr17_+_55055513 AY358559 AF282618 AK027373 BC010078 AK298161 CU687218 BC072405 AF113214	63546	+	TSC_hg19_v1_chr17_+_55162639 NM_003488 BC000729 X97335	170656	+	NM_005082|TRIM25|7706|tripartite motif containing 25##D21205|TRIM25|7706|tripartite motif containing 25##AB208994|TRIM25|7706|tripartite motif containing 25##BC016924|TRIM25|7706|tripartite motif containing 25##BC042541|TRIM25|7706|tripartite motif containing 25##NM_003647|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##BC022297|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##AK310668|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##AK293039|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##U49379|DGKE|8526|diacylglycerol kinase, epsilon 64kDa##DQ892927|COIL|8161|coilin##DQ896176|COIL|8161|coilin##AK313616|COIL|8161|coilin##U06632|COIL|8161|coilin##BC010385|COIL|8161|coilin##NM_004645|COIL|8161|coilin##NM_021626|SCPEP1|59342|serine carboxypeptidase 1##AY358559|SCPEP1|59342|serine carboxypeptidase 1##AF282618|SCPEP1|59342|serine carboxypeptidase 1##AK027373|SCPEP1|59342|serine carboxypeptidase 1##BC010078|SCPEP1|59342|serine carboxypeptidase 1##AK298161|SCPEP1|59342|serine carboxypeptidase 1##BC072405|SCPEP1|59342|serine carboxypeptidase 1##AF113214|SCPEP1|59342|serine carboxypeptidase 1##NM_003488|AKAP1|8165|A kinase (PRKA) anchor protein 1##BC000729|AKAP1|8165|A kinase (PRKA) anchor protein 1##X97335|AKAP1|8165|A kinase (PRKA) anchor protein 1	1.978497	0.0	denovo_WM_7:-38:0.557	denovo_WM_7:-39:0.299
chr18	51751173	51751240	reg1014678.p1	4.320	+	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	-129	-	TSC_hg19_v1_chr18_-_51750997 BC032638	-241	-	AF072246 TSC_hg19_v1_chr18_-_51750614	-669	-	NM_007195 TSC_hg19_v1_chr18_+_51795943 AK301578 AF140501 BC032617 BC032662 AL136670 AF245438 AK093688 AB463184 AM392978 DQ890893 DQ896811 CU689468	44734	+	AB528241 AF480305 NM_139171	129736	-	BX640877 NM_173529	133964	+	AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##NM_007195|POLI|11201|polymerase (DNA directed) iota##AK301578|POLI|11201|polymerase (DNA directed) iota##AF140501|POLI|11201|polymerase (DNA directed) iota##BC032617|POLI|11201|polymerase (DNA directed) iota##BC032662|POLI|11201|polymerase (DNA directed) iota##AL136670|POLI|11201|polymerase (DNA directed) iota##AF245438|POLI|11201|polymerase (DNA directed) iota##AK093688|POLI|11201|polymerase (DNA directed) iota##AM392978|POLI|11201|polymerase (DNA directed) iota##DQ890893|POLI|11201|polymerase (DNA directed) iota##DQ896811|POLI|11201|polymerase (DNA directed) iota##AF480305|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##NM_139171|STARD6|147323|StAR-related lipid transfer (START) domain containing 6##BX640877|C18orf54|162681|chromosome 18 open reading frame 54##NM_173529|C18orf54|162681|chromosome 18 open reading frame 54	0.0	0.029199	
chr1	206689730	206689827	reg1013330.p1	4.319	+	TSC_hg19_v1_chr1_+_206680863 AK291268 AY062002 AY062003 BC004270 BC007203 NM_182663 NM_182664 AB209145 DQ892961 DQ896208	-8877	+	TSC_hg19_v1_chr1_+_206680860 AK289861	-8917	+	TSC_hg19_v1_chr1_+_206643833 BC105923 BC105924 BC107591 BC107812 D63485	-45933	+	TSC_hg19_v1_chr1_+_206730491 NM_182665 AF445801	40697	+	TSC_hg19_v1_chr1_+_206730542 BC042651 AY216268	40742	+	AL832784 AY261332 AK292039 TSC_hg19_v1_chr1_+_206730613	40830	+	AK291268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062002|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY062003|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC004270|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC007203|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182663|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##NM_182664|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AB209145|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ892961|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##DQ896208|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK289861|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC105923|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC105924|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107591|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##BC107812|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##D63485|IKBKE|9641|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon##NM_182665|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AF445801|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##BC042651|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY216268|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AL832784|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AY261332|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5##AK292039|RASSF5|83593|Ras association (RalGDS/AF-6) domain family member 5	0.814118	0.0	denovo_WM_7:24:0.790
chr12	120107000	120107099	reg1014973.p1	4.319	+	TSC_hg19_v1_chr12_+_120105769 AK312495 NM_006253 BC017671 AF022116 BC001007 BC001056 BC001823 BC018818 U83994 AK301165 Y12556 AB590811 AJ224515	-1197	+	NM_001136534 AK296289	-75749	+	BC040553 NM_178499	-334533	+	AK123136 TSC_hg19_v1_chr12_-_120241305	134248	-	TSC_hg19_v1_chr12_-_120315112 AY209000 AY257469 BC008127 AY681966 NM_001206999 NM_007174	208044	-	TSC_hg19_v1_chr12_+_120427616 AK129960 NM_207311 U88834	320549	+	AK312495|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##NM_006253|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC017671|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AF022116|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001007|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001056|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC001823|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##BC018818|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##U83994|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AK301165|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##Y12556|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##AJ224515|PRKAB1|5564|protein kinase, AMP-activated, beta 1 non-catalytic subunit##NM_001136534|TMEM233|387890|transmembrane protein 233##AK296289|TMEM233|387890|transmembrane protein 233##BC040553|CCDC60|160777|coiled-coil domain containing 60##NM_178499|CCDC60|160777|coiled-coil domain containing 60##AK123136|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY209000|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY257469|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##BC008127|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AY681966|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_001206999|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##NM_007174|CIT|11113|citron (rho-interacting, serine/threonine kinase 21)##AK129960|CCDC64|92558|coiled-coil domain containing 64##NM_207311|CCDC64|92558|coiled-coil domain containing 64##U88834|CCDC64|92558|coiled-coil domain containing 64	1.658392	0.0	denovo_WM_7:33:0.981	denovo_WM_7:-104:0.256	denovo_WM_7:-106:0.376
chr14	34455113	34455247	reg1012894.p2	4.319	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-35031	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1046690	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1656644	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	476307	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	553705	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	644175	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	1.978816	0.0	denovo_WM_7:78:0.864	denovo_WM_7:93:0.864
chr4	32776757	32776858	reg1016564.p1	4.319	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-2054348	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-2054613	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-2054808	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	3469230	-	AK131492 NM_001136536 AK304357 AK316523	3506439	+	BC157885 NM_001170700	3508836	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.47555	0.030052	denovo_WM_7:-43:0.270
chr8	28728021	28728130	reg1000765.p2	4.319	+	TSC_hg19_v1_chr8_+_28559149 AF001690 AB007042 AF083551 NM_001440	-168925	+	TSC_hg19_v1_chr8_+_28559032 AB011091	-169000	+	TSC_hg19_v1_chr8_+_28351764 NM_017412 NM_145866 AK291480 AB039723	-376310	+	TSC_hg19_v1_chr8_-_28747454 BC016687 AK225072 AK304525 AK298468 NM_001172562 BC025267 AK300593 AK295977 AK001733 AK225530	19385	-	NM_001145159 NM_018250	19622	-	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	19842	+	AF001690|EXTL3|2137|exostoses (multiple)-like 3##AB007042|EXTL3|2137|exostoses (multiple)-like 3##AF083551|EXTL3|2137|exostoses (multiple)-like 3##NM_001440|EXTL3|2137|exostoses (multiple)-like 3##AB011091|EXTL3|2137|exostoses (multiple)-like 3##NM_017412|FZD3|7976|frizzled family receptor 3##NM_145866|FZD3|7976|frizzled family receptor 3##AK291480|FZD3|7976|frizzled family receptor 3##AB039723|FZD3|7976|frizzled family receptor 3##BC016687|INTS9|55756|integrator complex subunit 9##AK225072|INTS9|55756|integrator complex subunit 9##AK304525|INTS9|55756|integrator complex subunit 9##AK298468|INTS9|55756|integrator complex subunit 9##NM_001172562|INTS9|55756|integrator complex subunit 9##BC025267|INTS9|55756|integrator complex subunit 9##AK300593|INTS9|55756|integrator complex subunit 9##AK295977|INTS9|55756|integrator complex subunit 9##AK001733|INTS9|55756|integrator complex subunit 9##AK225530|INTS9|55756|integrator complex subunit 9##NM_001145159|INTS9|55756|integrator complex subunit 9##NM_018250|INTS9|55756|integrator complex subunit 9##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1	0.0	0.0	
chr9	19161617	19161699	reg1012045.p1	4.319	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-34110	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-34181	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-58649	-	NM_017925 BC144484 BC144485	129093	+	TSC_hg19_v1_chr9_-_19378815 BC035447	217208	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	218569	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	0.067838	0.0	
chr15	63635369	63635515	reg1011685.p2	4.318	+	NM_001145646 NM_031301 TSC_hg19_v1_chr15_+_63569803 AK291204 AL136671 BC020905 AB189172 AB197122 AF508794 AX776001 AY358698 AB528062 AM392724 AM392878 DQ891401 CU676772 AK307725	-65629	+	TSC_hg19_v1_chr15_+_63481804 AK001111 AK095444 AK297598 AL833365 BC020654 AB464123 CU676608	-153637	+	TSC_hg19_v1_chr15_+_63481724 NM_016530 AB038995	-153713	+	BT006656 DQ893188 DQ896511 EU831616 EU831623 EU831703 EU831708 AF051882 BC000278 AF037335 BC011691 TSC_hg19_v1_chr15_-_63674046 AK096845 BC023981	38550	-	AK315769 NM_001218 NM_206925 TSC_hg19_v1_chr15_-_63674076	38633	-	TSC_hg19_v1_chr15_+_63796791 AK314223	161340	+	NM_001145646|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##NM_031301|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK291204|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AL136671|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##BC020905|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB189172|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AB197122|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AF508794|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AY358698|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392724|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AM392878|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##DQ891401|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK307725|APH1B|83464|anterior pharynx defective 1 homolog B (C. elegans)##AK001111|RAB8B|51762|RAB8B, member RAS oncogene family##AK095444|RAB8B|51762|RAB8B, member RAS oncogene family##AK297598|RAB8B|51762|RAB8B, member RAS oncogene family##AL833365|RAB8B|51762|RAB8B, member RAS oncogene family##BC020654|RAB8B|51762|RAB8B, member RAS oncogene family##NM_016530|RAB8B|51762|RAB8B, member RAS oncogene family##AB038995|RAB8B|51762|RAB8B, member RAS oncogene family##BT006656|CA12|771|carbonic anhydrase XII##DQ893188|CA12|771|carbonic anhydrase XII##DQ896511|CA12|771|carbonic anhydrase XII##EU831616|CA12|771|carbonic anhydrase XII##EU831623|CA12|771|carbonic anhydrase XII##EU831703|CA12|771|carbonic anhydrase XII##EU831708|CA12|771|carbonic anhydrase XII##AF051882|CA12|771|carbonic anhydrase XII##BC000278|CA12|771|carbonic anhydrase XII##AF037335|CA12|771|carbonic anhydrase XII##BC011691|CA12|771|carbonic anhydrase XII##AK096845|CA12|771|carbonic anhydrase XII##BC023981|CA12|771|carbonic anhydrase XII##AK315769|CA12|771|carbonic anhydrase XII##NM_001218|CA12|771|carbonic anhydrase XII##NM_206925|CA12|771|carbonic anhydrase XII##AK314223|USP3|9960|ubiquitin specific peptidase 3	0.995086	0.0	
chr15	98984406	98984532	reg1016765.p1	4.318	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	-480518	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	-480550	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-1657797	+	AK097062 AK097062 NM_182562	73141	-	TSC_hg19_v1_chr15_+_99191767 AB425196	207502	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	208287	+	BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor	1.969646	0.0	denovo_WM_7:69:0.943	denovo_WM_7:84:0.954
chr16	72995509	72995640	reg1015924.p1	4.318	+	TSC_hg19_v1_chr16_-_72991733 BC029653	-3869	-	TSC_hg19_v1_chr16_+_72699031 AK021563	-296510	+	AK122925 NM_001160213	-789226	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	86647	-	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	97012	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	1335119	+	BC029653|ZFHX3|463|zinc finger homeobox 3##AK122925|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##NM_001160213|PMFBP1|83449|polyamine modulated factor 1 binding protein 1##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.993952	0.0	denovo_WM_7:-40:0.755
chr19	4232123	4232284	reg1004587.p3	4.318	+	BC015364 L08187 NM_005755 BC046112 AB528398 DQ891589 EU176581 CU677281	-2683	+	NM_133475	-48853	+	TSC_hg19_v1_chr19_-_4182561 DQ896358 EU176413 AB528632 CR457200 CU678868 BC005026 BC000090 BC004218 AK299420 BC028220 AK293348 AK315048 AK301247 AK074810 AK225567 AF233396 NM_001193285 NM_016539	-49658	-	TSC_hg19_v1_chr19_+_4247086 AK001236 BC000561 AK023988 NM_018074 AF091080	14887	+	AK056268 NM_020209	46394	+	HQ452865 HQ452866 AY358964 BC015655 NM_001169126 NM_144615	70201	-	BC015364|EBI3|10148|Epstein-Barr virus induced 3##L08187|EBI3|10148|Epstein-Barr virus induced 3##NM_005755|EBI3|10148|Epstein-Barr virus induced 3##BC046112|EBI3|10148|Epstein-Barr virus induced 3##DQ891589|EBI3|10148|Epstein-Barr virus induced 3##EU176581|EBI3|10148|Epstein-Barr virus induced 3##NM_133475|ANKRD24|170961|ankyrin repeat domain 24##DQ896358|SIRT6|51548|sirtuin 6##EU176413|SIRT6|51548|sirtuin 6##CR457200|SIRT6|51548|sirtuin 6##BC005026|SIRT6|51548|sirtuin 6##BC004218|SIRT6|51548|sirtuin 6##AK299420|SIRT6|51548|sirtuin 6##BC028220|SIRT6|51548|sirtuin 6##AK293348|SIRT6|51548|sirtuin 6##AK315048|SIRT6|51548|sirtuin 6##AK301247|SIRT6|51548|sirtuin 6##AK074810|SIRT6|51548|sirtuin 6##AK225567|SIRT6|51548|sirtuin 6##AF233396|SIRT6|51548|sirtuin 6##NM_001193285|SIRT6|51548|sirtuin 6##NM_016539|SIRT6|51548|sirtuin 6##AK001236|CCDC94|55702|coiled-coil domain containing 94##BC000561|CCDC94|55702|coiled-coil domain containing 94##AK023988|CCDC94|55702|coiled-coil domain containing 94##NM_018074|CCDC94|55702|coiled-coil domain containing 94##AF091080|CCDC94|55702|coiled-coil domain containing 94##AK056268|SHD|56961|Src homology 2 domain containing transforming protein D##NM_020209|SHD|56961|Src homology 2 domain containing transforming protein D##HQ452865|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##HQ452866|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##AY358964|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##BC015655|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_001169126|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2##NM_144615|TMIGD2|126259|transmembrane and immunoglobulin domain containing 2	3.638136	0.0	denovo_WM_7:24:0.267	denovo_WM_7:42:0.486	denovo_WM_7:63:0.468	denovo_WM_7:84:0.754
chr3	28078577	28078757	reg1006998.p2	4.318	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-314466	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-314874	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-552737	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	204431	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	311715	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	311894	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.0	0.0	
chr6	130005208	130005339	reg1013055.p1	4.318	+	NM_000426 NM_001079823 Z26653	-800960	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1163617	-	AK124031 NM_001164687	-1765515	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	26053	-	NM_001010876	177142	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	334452	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.262564	0.0	
chr7	7960272	7960452	reg1011701.p1	4.318	+	BC009868 NM_002947	-202125	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-279989	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-280275	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	48071	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	341354	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	341429	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chr11	3926529	3926687	reg1009752.p1	4.317	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-49679	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-64409	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-64453	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	189381	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	189458	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	189551	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.999674	0.0	denovo_WM_7:0:0.842
chr1	16826331	16826432	reg1013765.p1	4.317	+	BC028053 TSC_hg19_v1_chr1_-_16825680	-730	-	TSC_hg19_v1_chr1_+_16767236 BC017014 AK001282 AB463921 AK024468 AM393342	-59136	+	AK223344 TSC_hg19_v1_chr1_+_16767218 AK300764 AK302227 AK023545 BC018914	-59156	+	TSC_hg19_v1_chr1_-_16940046 AK123260 AY894575 NM_017940 BC066930 BC010124 BC082236 BC110431 AK055895 BC093404	113515	-	TSC_hg19_v1_chr1_-_16971175 AK090414	144785	-	AK123337 TSC_hg19_v1_chr1_-_16971178	144796	-	BC017014|NECAP2|55707|NECAP endocytosis associated 2##AK001282|NECAP2|55707|NECAP endocytosis associated 2##AK024468|NECAP2|55707|NECAP endocytosis associated 2##AM393342|NECAP2|55707|NECAP endocytosis associated 2##AK223344|NECAP2|55707|NECAP endocytosis associated 2##AK300764|NECAP2|55707|NECAP endocytosis associated 2##AK302227|NECAP2|55707|NECAP endocytosis associated 2##AK023545|NECAP2|55707|NECAP endocytosis associated 2##BC018914|NECAP2|55707|NECAP endocytosis associated 2##AK123260|NBPF1|55672|neuroblastoma breakpoint family, member 1##AY894575|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_017940|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC066930|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC010124|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC110431|NBPF1|55672|neuroblastoma breakpoint family, member 1##AK055895|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC093404|NBPF1|55672|neuroblastoma breakpoint family, member 1##AK090414|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK123337|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2	0.997753	0.0	denovo_WM_7:45:0.310	denovo_WM_7:46:0.310	denovo_WM_7:47:0.310
chr14	62229670	62229773	reg1010281.p2	4.317	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	-602	+	FJ790247 NM_001243084	-65382	+	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	-67531	+	AJ617628 NM_031914 BC117363 BC143598 HQ258344 AB102949	232917	+	TSC_hg19_v1_chr14_+_62584125 BX248751	354437	+	AF418206 AF472412 AF493798 NM_139318 NM_172375 BC073979	1282208	-	AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AJ617628|SYT16|83851|synaptotagmin XVI##NM_031914|SYT16|83851|synaptotagmin XVI##BC117363|SYT16|83851|synaptotagmin XVI##BC143598|SYT16|83851|synaptotagmin XVI##HQ258344|SYT16|83851|synaptotagmin XVI##AB102949|SYT16|83851|synaptotagmin XVI##BX248751|FLJ43390|646113|uncharacterized LOC646113##AF418206|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AF472412|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AF493798|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_139318|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_172375|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##BC073979|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5	1.91103	0.0	denovo_WM_7:-2:0.314	denovo_WM_7:-3:0.308	denovo_WM_7:-4:0.301	denovo_WM_7:-19:0.892
chr16	56390721	56390834	reg1010336.p1	4.317	+	AK056008 TSC_hg19_v1_chr16_+_56225314	-165467	+	NM_020988 NM_138736 TSC_hg19_v1_chr16_+_56225253	-165526	+	AK294334 NM_001190158	-400835	-	AF124145 TSC_hg19_v1_chr16_-_56459357	68552	-	TSC_hg19_v1_chr16_-_56459390 NM_001144 BC069197	68646	-	AJ001810 CR456919 AB590091 AM392991 AM393219 DQ892142 DQ895336 TSC_hg19_v1_chr16_-_56485242 BC001403 BX647665 NM_007006 AK312721 BX537360	94433	-	AK056008|GNAO1|2775|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O##NM_020988|GNAO1|2775|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O##NM_138736|GNAO1|2775|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O##AK294334|CES5A|221223|carboxylesterase 5A##NM_001190158|CES5A|221223|carboxylesterase 5A##AF124145|AMFR|267|autocrine motility factor receptor##NM_001144|AMFR|267|autocrine motility factor receptor##BC069197|AMFR|267|autocrine motility factor receptor##AJ001810|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##CR456919|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AM392991|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AM393219|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##DQ892142|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##DQ895336|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BC001403|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BX647665|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##NM_007006|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##AK312721|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21##BX537360|NUDT21|11051|nudix (nucleoside diphosphate linked moiety X)-type motif 21	1.170268	0.0	denovo_WM_7:-83:0.269	denovo_WM_7:-84:0.694
chr19	17829981	17830125	reg1011074.p1	4.317	+	AB028955 NM_001080421 AB587313 TSC_hg19_v1_chr19_-_17799158	-30955	-	TSC_hg19_v1_chr19_+_17666507 AK075541 NM_024656	-163542	+	TSC_hg19_v1_chr19_+_17666457 BC108308	-163590	+	TSC_hg19_v1_chr19_+_17830288 AK292555	237	+	DQ387861 NM_018174 AL834233 BC067115 TSC_hg19_v1_chr19_+_17830310 BC080547 AJ440784 AK027623 BC113952 AK308975	256	+	TSC_hg19_v1_chr19_+_17858564 NM_001161357 NM_001161358 AK291410 BC028021	28498	+	AB028955|UNC13A|23025|unc-13 homolog A (C. elegans)##NM_001080421|UNC13A|23025|unc-13 homolog A (C. elegans)##AK075541|GLT25D1|79709|glycosyltransferase 25 domain containing 1##NM_024656|GLT25D1|79709|glycosyltransferase 25 domain containing 1##BC108308|GLT25D1|79709|glycosyltransferase 25 domain containing 1##AK292555|MAP1S|55201|microtubule-associated protein 1S##DQ387861|MAP1S|55201|microtubule-associated protein 1S##NM_018174|MAP1S|55201|microtubule-associated protein 1S##AL834233|MAP1S|55201|microtubule-associated protein 1S##BC067115|MAP1S|55201|microtubule-associated protein 1S##BC080547|MAP1S|55201|microtubule-associated protein 1S##AJ440784|MAP1S|55201|microtubule-associated protein 1S##AK027623|MAP1S|55201|microtubule-associated protein 1S##BC113952|MAP1S|55201|microtubule-associated protein 1S##AK308975|MAP1S|55201|microtubule-associated protein 1S##NM_001161357|FCHO1|23149|FCH domain only 1##NM_001161358|FCHO1|23149|FCH domain only 1##AK291410|FCHO1|23149|FCH domain only 1##BC028021|FCHO1|23149|FCH domain only 1	0.105195	0.0	
chr20	33680648	33680766	reg1014680.p1	4.317	+	TSC_hg19_v1_chr20_-_33680611 AK298958 AK303476 AK315582 NM_015638 NM_199368	-67	-	TSC_hg19_v1_chr20_-_33680600 AK074106	-111	-	TSC_hg19_v1_chr20_-_33680592 AB590540 CU680522 BC013144	-235	-	AK096016 AK298794 TSC_hg19_v1_chr20_-_33734933	54206	-	CR457266 CU674674 TSC_hg19_v1_chr20_-_33735112 BC016184 AK300212 AY358580 BC001371 AK023931 AK303816 AK001645 NM_001145025 NM_018217	54417	-	AK314887 NM_006404 BC014451 X89079 L35545 CR456948 DQ892834 DQ896081	79158	+	AK298958|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK303476|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK315582|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##NM_015638|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##NM_199368|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK074106|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##BC013144|TRPC4AP|26133|transient receptor potential cation channel, subfamily C, member 4 associated protein##AK096016|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK298794|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##CR457266|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC016184|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK300212|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AY358580|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##BC001371|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK023931|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK303816|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK001645|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_001145025|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##NM_018217|EDEM2|55741|ER degradation enhancer, mannosidase alpha-like 2##AK314887|PROCR|10544|protein C receptor, endothelial##NM_006404|PROCR|10544|protein C receptor, endothelial##BC014451|PROCR|10544|protein C receptor, endothelial##X89079|PROCR|10544|protein C receptor, endothelial##L35545|PROCR|10544|protein C receptor, endothelial##CR456948|PROCR|10544|protein C receptor, endothelial##DQ892834|PROCR|10544|protein C receptor, endothelial##DQ896081|PROCR|10544|protein C receptor, endothelial	0.0	0.0	
chr20	54979554	54979669	reg1012104.p1	4.317	+	TSC_hg19_v1_chr20_+_54967709 AK293182 AK312774 NM_001033522 BC001011 BC007425	-11894	+	TSC_hg19_v1_chr20_+_54967593 NM_001324 L02547	-12014	+	TSC_hg19_v1_chr20_+_54967443 NM_001033521 AK307144	-12187	+	AJ276678 NM_001164116 AX721200 AK308057 NM_001164114 NM_001164115 NM_020356 AK027760 BC027951 AK314653 AK295613	7696	+	NM_016407 TSC_hg19_v1_chr20_+_55043664	64048	+	TSC_hg19_v1_chr20_+_55043682 AF161513 AK314563	64073	+	AK293182|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##AK312774|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001033522|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##BC001011|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##BC007425|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001324|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##L02547|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##NM_001033521|CSTF1|1477|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa##AJ276678|CASS4|57091|Cas scaffolding protein family member 4##NM_001164116|CASS4|57091|Cas scaffolding protein family member 4##AK308057|CASS4|57091|Cas scaffolding protein family member 4##NM_001164114|CASS4|57091|Cas scaffolding protein family member 4##NM_001164115|CASS4|57091|Cas scaffolding protein family member 4##NM_020356|CASS4|57091|Cas scaffolding protein family member 4##AK027760|CASS4|57091|Cas scaffolding protein family member 4##BC027951|CASS4|57091|Cas scaffolding protein family member 4##AK314653|CASS4|57091|Cas scaffolding protein family member 4##AK295613|CASS4|57091|Cas scaffolding protein family member 4##NM_016407|C20orf43|51507|chromosome 20 open reading frame 43##AF161513|C20orf43|51507|chromosome 20 open reading frame 43##AK314563|C20orf43|51507|chromosome 20 open reading frame 43	1.021517	0.0	denovo_WM_7:97:0.898
chr3	194393169	194393285	reg1012631.p1	4.317	+	NM_018385	-22	-	AK002163 TSC_hg19_v1_chr3_-_194392942	-276	-	TSC_hg19_v1_chr3_-_194392921 BC068500	-310	-	TSC_hg19_v1_chr3_+_194406619 NM_153690	13396	+	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	14276	+	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	598623	-	NM_018385|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##AK002163|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC068500|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1	0.0	0.0	
chr12	2801067	2801194	reg1012595.p1	4.316	+	AB209016 AJ224873 AY830711 AY830712 AY830713 Z34809 Z34810 Z34811 Z34812 Z34813 Z34814 Z34815 Z34816 Z34817 Z34818 Z34819 Z34820 Z34821 Z34822 Z74996 TSC_hg19_v1_chr12_+_2162753	-638402	+	TSC_hg19_v1_chr12_+_2162452 NM_000719 NM_001129827 NM_001129829 NM_001129830 NM_001129831 NM_001129832 NM_001129833 NM_001129834 NM_001129835 NM_001129836 NM_001129837 NM_001129838 NM_001129839 NM_001129840 NM_001129841 NM_001129842 NM_001129843 NM_001129844 NM_001129846 NM_001167623 NM_001167624 NM_001167625 NM_199460 AK309111 AF465484 AK308652 BC146846	-638636	+	TSC_hg19_v1_chr12_-_2113622 AB463561 AK301109 AK056200 AK299203 BC043437 AY146652 NM_152640	-687459	-	TSC_hg19_v1_chr12_+_2904161 NM_002014 AK313918 BC001786 M88279 BC007924	103024	+	TSC_hg19_v1_chr12_+_2904310 AB385011 CU674888 DQ893668 DQ895800	103172	+	NM_018463 TSC_hg19_v1_chr12_+_2921842 AK130319 AK297189 AK291110 AK300905 AK027483 BC006552 BC013399 DQ892711 DQ895963 CU675449 AY599883	120726	+	AB209016|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AJ224873|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AY830711|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AY830712|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AY830713|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34809|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34810|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34811|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34812|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34813|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34814|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34815|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34816|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34817|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34818|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34819|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34820|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34821|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34822|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z74996|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_000719|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129827|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129829|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129830|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129831|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129832|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129833|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129834|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129835|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129836|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129837|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129838|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129839|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129840|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129841|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129842|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129843|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129844|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129846|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001167623|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001167624|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001167625|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_199460|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AK309111|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AF465484|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AK308652|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##BC146846|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AK301109|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##AK056200|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##AK299203|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##BC043437|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##AY146652|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##NM_152640|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##NM_002014|FKBP4|2288|FK506 binding protein 4, 59kDa##AK313918|FKBP4|2288|FK506 binding protein 4, 59kDa##BC001786|FKBP4|2288|FK506 binding protein 4, 59kDa##M88279|FKBP4|2288|FK506 binding protein 4, 59kDa##BC007924|FKBP4|2288|FK506 binding protein 4, 59kDa##DQ893668|FKBP4|2288|FK506 binding protein 4, 59kDa##DQ895800|FKBP4|2288|FK506 binding protein 4, 59kDa##NM_018463|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK130319|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK297189|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK291110|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK300905|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK027483|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##BC006552|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##BC013399|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ892711|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ895963|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AY599883|ITFG2|55846|integrin alpha FG-GAP repeat containing 2	0.272875	0.0	denovo_WM_7:-2:0.255
chr18	43518636	43518750	reg1004376.p2	4.316	+	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-113069	+	NM_001146037	-211776	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	-214536	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	28585	-	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	133515	-	TSC_hg19_v1_chr18_-_43668143 AK129804	149484	-	AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.0	0.0	
chr3	135916041	135916169	reg1010940.p1	4.316	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	-1424	-	AK302491 NM_001145417	-2813	-	NM_181897 AK316258 L12146	-174487	+	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	53059	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	53097	+	TSC_hg19_v1_chr3_-_136471221 BC040708 AB210023 AK309934 BC064699 CR749247 NM_005862	555110	-	AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##AK302491|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_001145417|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC040708|STAG1|10274|stromal antigen 1##AB210023|STAG1|10274|stromal antigen 1##AK309934|STAG1|10274|stromal antigen 1##BC064699|STAG1|10274|stromal antigen 1##CR749247|STAG1|10274|stromal antigen 1##NM_005862|STAG1|10274|stromal antigen 1	0.997766	0.0	denovo_WM_7:27:0.951
chr14	92904218	92904347	reg1014311.p1	4.315	+	NM_153646 AF520704 AF520705 BC069653	-114106	+	AK295059 NM_153647	-114746	+	AF520706 NM_153648	-115358	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	75677	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	214354	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	214541	+	NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520706|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153648|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3	0.0	0.134757	
chr19	39074130	39074291	reg1012120.p1	4.315	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-149866	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-157338	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-180309	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	34378	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	35503	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	35606	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.996744	0.0	denovo_WM_7:-85:0.971
chr5	132438987	132439159	reg1013419.p2	4.315	+	TSC_hg19_v1_chr5_+_132432890 AK315862	-6182	+	TSC_hg19_v1_chr5_+_132428397 AK315887 AK311316	-10670	+	TSC_hg19_v1_chr5_+_132406081 AK295847 AK311471	-32970	+	TSC_hg19_v1_chr5_-_132948202 AK055684	509126	-	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	509165	-	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	865302	-	AK315862|HSPA4|3308|heat shock 70kDa protein 4##AK315887|HSPA4|3308|heat shock 70kDa protein 4##AK311316|HSPA4|3308|heat shock 70kDa protein 4##AK295847|HSPA4|3308|heat shock 70kDa protein 4##AK311471|HSPA4|3308|heat shock 70kDa protein 4##AK055684|FSTL4|23105|follistatin-like 4##NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15	0.993077	0.0	denovo_WM_7:-1:0.455	denovo_WM_7:-3:0.421
chr10	97190208	97190358	reg1012453.p1	4.314	+	AJ310549 CU674454 EU446864 AB464004 TSC_hg19_v1_chr10_-_97050757 BC018755 AK314792 BC000915 NM_020992	-139501	-	AK126134 NM_207321	-236327	+	M21942 M21941 DQ891400 DQ894579 M17397 M17398 AK303813 Y00498 AK292753 AK293327 AK293328 AK298401 AK315823 BC020596 NM_000770 NM_001198853 NM_001198854 NM_001198855	-361120	-	AM393082 NM_001034954 NM_001034955 NM_001034956 NM_001034957 NM_006434	10632	-	TSC_hg19_v1_chr10_-_97321129 AB037717 BC152463 AK022468 AK300407 AK304753 AL117472 AM260536 NM_015385 NM_024991	130856	-	TSC_hg19_v1_chr10_-_97416472 U68758 U76542 BC106054 AK225455 AK225465 AK226032 AK295487 X94453 AK299557 AK312271 BC117240 BC117242 BC143930	226154	-	AJ310549|PDLIM1|9124|PDZ and LIM domain 1##EU446864|PDLIM1|9124|PDZ and LIM domain 1##BC018755|PDLIM1|9124|PDZ and LIM domain 1##AK314792|PDLIM1|9124|PDZ and LIM domain 1##BC000915|PDLIM1|9124|PDZ and LIM domain 1##NM_020992|PDLIM1|9124|PDZ and LIM domain 1##AK126134|C10orf129|142827|chromosome 10 open reading frame 129##NM_207321|C10orf129|142827|chromosome 10 open reading frame 129##M21942|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M21941|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ891400|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##DQ894579|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17397|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##M17398|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK303813|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##Y00498|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK292753|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293327|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK293328|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK298401|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AK315823|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##BC020596|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_000770|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198853|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198854|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##NM_001198855|CYP2C8|1558|cytochrome P450, family 2, subfamily C, polypeptide 8##AM393082|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034954|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034955|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034956|SORBS1|10580|sorbin and SH3 domain containing 1##NM_001034957|SORBS1|10580|sorbin and SH3 domain containing 1##NM_006434|SORBS1|10580|sorbin and SH3 domain containing 1##AB037717|SORBS1|10580|sorbin and SH3 domain containing 1##BC152463|SORBS1|10580|sorbin and SH3 domain containing 1##AK022468|SORBS1|10580|sorbin and SH3 domain containing 1##AK300407|SORBS1|10580|sorbin and SH3 domain containing 1##AK304753|SORBS1|10580|sorbin and SH3 domain containing 1##AL117472|SORBS1|10580|sorbin and SH3 domain containing 1##AM260536|SORBS1|10580|sorbin and SH3 domain containing 1##NM_015385|SORBS1|10580|sorbin and SH3 domain containing 1##NM_024991|SORBS1|10580|sorbin and SH3 domain containing 1##U68758|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##U76542|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC106054|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK225455|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK225465|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK226032|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK295487|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##X94453|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK299557|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##AK312271|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC117240|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC117242|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1##BC143930|ALDH18A1|5832|aldehyde dehydrogenase 18 family, member A1	0.991921	0.933199	CTCF.p2:36:0.933	denovo_WM_7:-49:0.541	denovo_WM_7:-67:0.216
chr1	235120357	235120496	reg1010906.p1	4.314	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-224652	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-375180	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-376568	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	171663	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	171805	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	204137	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.999132	0.0455	denovo_WM_7:94:0.239	denovo_WM_7:95:0.239	denovo_WM_7:96:0.239	denovo_WM_7:97:0.239
chr15	59645919	59646055	reg1014333.p1	4.314	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-146935	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-248616	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-286909	+	AB290177 TSC_hg19_v1_chr15_-_59665055	19067	-	TSC_hg19_v1_chr15_-_59665065 AK291688	19079	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	19083	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	1.466161	0.0	denovo_WM_7:-6:0.418	denovo_WM_7:-22:0.965
chr21	26829835	26830015	reg1014934.p2	4.314	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1028857	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4459152	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4459235	+	TSC_hg19_v1_chr21_+_26934442 AF402776	104547	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	149890	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	181728	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.0	0.0	
chr2	242250463	242250593	reg1012106.p1	4.314	+	TSC_hg19_v1_chr2_-_242212511 AK309075	-38012	-	TSC_hg19_v1_chr2_-_242212245 AK300312 NM_001243900 NM_203346	-38284	-	TSC_hg19_v1_chr2_-_242212216 M64098	-38308	-	BC014455 NM_001008491 NM_006155 TSC_hg19_v1_chr2_+_242254810 D63878	4239	+	TSC_hg19_v1_chr2_-_242255074 BC001179 AK296684 AK312335	4507	-	BX647759 NM_005336 TSC_hg19_v1_chr2_-_242255118	4590	-	AK309075|HDLBP|3069|high density lipoprotein binding protein##AK300312|HDLBP|3069|high density lipoprotein binding protein##NM_001243900|HDLBP|3069|high density lipoprotein binding protein##NM_203346|HDLBP|3069|high density lipoprotein binding protein##M64098|HDLBP|3069|high density lipoprotein binding protein##BC014455|SEPT2|4735|septin 2##NM_001008491|SEPT2|4735|septin 2##NM_006155|SEPT2|4735|septin 2##D63878|SEPT2|4735|septin 2##BC001179|HDLBP|3069|high density lipoprotein binding protein##AK296684|HDLBP|3069|high density lipoprotein binding protein##AK312335|HDLBP|3069|high density lipoprotein binding protein##BX647759|HDLBP|3069|high density lipoprotein binding protein##NM_005336|HDLBP|3069|high density lipoprotein binding protein	1.925287	0.0	denovo_WM_7:10:0.956	denovo_WM_7:33:0.448
chr4	22629375	22629489	reg1006649.p1	4.314	+	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	-111878	-	NM_147182 TSC_hg19_v1_chr4_-_21950396	-679048	-	BX648990 DQ148490 NM_001035003	-930115	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	65160	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1262221	-	AF279891 TSC_hg19_v1_chr4_-_24586127	1956644	-	AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF279891|DHX15|1665|DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.989816	0.0	denovo_WM_7:5:0.571	denovo_WM_7:6:0.368
chr6	85463088	85463256	reg1010934.p2	4.314	+	AB023226 AK308190 BC063632 NM_014895 TSC_hg19_v1_chr6_-_84937334	-525848	-	TSC_hg19_v1_chr6_+_84743459 AK090775 AX746611 NM_138409 BC010003 AK307078 AK292736 BC039855	-719766	+	TSC_hg19_v1_chr6_+_84569438 AB527313 AM393033	-893708	+	TSC_hg19_v1_chr6_-_85472330 AJ010278	9153	-	AK310179 BC040697 TSC_hg19_v1_chr6_-_85473172	9998	-	HQ258462 NM_001080508 BC157841 BC132715	10753	-	AB023226|KIAA1009|22832|KIAA1009##AK308190|KIAA1009|22832|KIAA1009##BC063632|KIAA1009|22832|KIAA1009##NM_014895|KIAA1009|22832|KIAA1009##AK090775|MRAP2|112609|melanocortin 2 receptor accessory protein 2##NM_138409|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC010003|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK307078|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK292736|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC039855|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AM393033|CYB5R4|51167|cytochrome b5 reductase 4##AJ010278|TBX18|9096|T-box 18##AK310179|TBX18|9096|T-box 18##BC040697|TBX18|9096|T-box 18##HQ258462|TBX18|9096|T-box 18##NM_001080508|TBX18|9096|T-box 18##BC157841|TBX18|9096|T-box 18##BC132715|TBX18|9096|T-box 18	0.989357	0.0	denovo_WM_7:-9:0.353	denovo_WM_7:-11:0.605
chr7	38734084	38734192	reg1011620.p1	4.314	+	TSC_hg19_v1_chr7_-_38671019 X81438 AF034996 NM_001635 NM_139316	-63061	-	AF498097 CU689866 BC034376 AK291447 TSC_hg19_v1_chr7_-_38670974	-63176	-	TSC_hg19_v1_chr7_-_38389583 BC035592	-344549	-	HQ257912 TSC_hg19_v1_chr7_-_38948792 BX648347 BC044851 AK314556 NM_014396 NM_080631 U87309	214655	-	NM_001166018 NM_007252	283470	+	TSC_hg19_v1_chr7_+_39606002 AK314937 NM_020192 AK293511 AF226046 BC022043 CR457198 DQ892829 DQ896074 DQ896075	871831	+	X81438|AMPH|273|amphiphysin##AF034996|AMPH|273|amphiphysin##NM_001635|AMPH|273|amphiphysin##NM_139316|AMPH|273|amphiphysin##AF498097|AMPH|273|amphiphysin##BC034376|AMPH|273|amphiphysin##AK291447|AMPH|273|amphiphysin##BC035592|TRGV5|6978|T cell receptor gamma variable 5##HQ257912|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BX648347|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BC044851|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##AK314556|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_014396|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_080631|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##U87309|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_001166018|POU6F2|11281|POU class 6 homeobox 2##NM_007252|POU6F2|11281|POU class 6 homeobox 2##AK314937|YAE1D1|57002|Yae1 domain containing 1##NM_020192|YAE1D1|57002|Yae1 domain containing 1##AF226046|YAE1D1|57002|Yae1 domain containing 1##BC022043|YAE1D1|57002|Yae1 domain containing 1##CR457198|YAE1D1|57002|Yae1 domain containing 1##DQ892829|YAE1D1|57002|Yae1 domain containing 1##DQ896074|YAE1D1|57002|Yae1 domain containing 1##DQ896075|YAE1D1|57002|Yae1 domain containing 1	0.981861	0.0	denovo_WM_7:-25:0.201	denovo_WM_7:-27:0.563
chr8	26242161	26242341	reg1001060.p3	4.314	+	NM_004331 TSC_hg19_v1_chr8_+_26240583 AF452712 AK300286 AL132665 BC009603 AF067396 AF079221 AF060922 AK307195 AK300727 AF536326 AB004788 AK290213 BC001559 AB527613 BT019500 BT019501 CR456701 EU831983 EU832076	-1667	+	AK303981 NM_001177591	-91520	+	TSC_hg19_v1_chr8_+_26149092 M64929 AY189686	-93057	+	BC047515 TSC_hg19_v1_chr8_-_26371389 BC036489 AK055325 NM_007257	129183	-	TSC_hg19_v1_chr8_+_26371546 AK092377 NM_001197293 AB370195	129377	+	NM_001386 TSC_hg19_v1_chr8_+_26435441 BX647115 BC067109	193150	+	NM_004331|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF452712|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300286|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AL132665|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC009603|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF067396|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF079221|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF060922|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK307195|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300727|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF536326|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AB004788|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK290213|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC001559|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019500|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019501|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##CR456701|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU831983|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU832076|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK303981|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##NM_001177591|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##M64929|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AY189686|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC047515|PNMA2|10687|paraneoplastic antigen MA2##BC036489|PNMA2|10687|paraneoplastic antigen MA2##AK055325|PNMA2|10687|paraneoplastic antigen MA2##NM_007257|PNMA2|10687|paraneoplastic antigen MA2##AK092377|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001197293|DPYSL2|1808|dihydropyrimidinase-like 2##AB370195|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001386|DPYSL2|1808|dihydropyrimidinase-like 2##BX647115|DPYSL2|1808|dihydropyrimidinase-like 2##BC067109|DPYSL2|1808|dihydropyrimidinase-like 2	0.9977	0.0	
chr10	102193593	102193763	reg1014187.p2	4.313	+	AK023036 TSC_hg19_v1_chr10_+_102133657	-60050	+	TSC_hg19_v1_chr10_+_102123601 AF113690	-70166	+	TSC_hg19_v1_chr10_+_102121379 AF109362	-72295	+	Y11094 NM_003393 AB073637	29127	+	AF274863 BX640914 BC044569 BC053949 BC034946 NM_015490 AK289975 BC071580 AK294551	85972	-	CR533490 DQ893286 DQ896618 EU831639 EU831723 TSC_hg19_v1_chr10_-_102289622 AF044958 AK289579 BC000466 BC019276	95937	-	AK023036|LINC00263|90271|long intergenic non-protein coding RNA 263##AF109362|SCD|6319|stearoyl-CoA desaturase (delta-9-desaturase)##Y11094|WNT8B|7479|wingless-type MMTV integration site family, member 8B##NM_003393|WNT8B|7479|wingless-type MMTV integration site family, member 8B##AB073637|WNT8B|7479|wingless-type MMTV integration site family, member 8B##AF274863|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BX640914|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC044569|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC053949|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC034946|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##NM_015490|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK289975|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##BC071580|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##AK294551|SEC31B|25956|SEC31 homolog B (S. cerevisiae)##CR533490|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##DQ893286|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##DQ896618|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##EU831639|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##EU831723|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AF044958|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##AK289579|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##BC000466|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa##BC019276|NDUFB8|4714|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa	0.0	0.725521	CTCF.p2:3:0.675
chr15	77480382	77480542	reg1011882.p2	4.313	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-7734	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-116918	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-116979	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	232081	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	232569	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	232800	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	0.0	0.0	
chr19	39935732	39935863	reg1005468.p1	4.313	+	CU678668 CU687136 DQ893449 DQ896219 TSC_hg19_v1_chr19_-_39926589 BC024970 BC007977 BC071674 M60854 BC095429 BC004324 AK055869 AK315498 D28392 NM_001020	-9221	-	AK024429 NM_022835	-32048	+	TSC_hg19_v1_chr19_+_39899749 AJ227917	-36004	+	NM_001111020 NM_001130824 NM_001130825 TSC_hg19_v1_chr19_+_39936212 AB000516	401	+	TSC_hg19_v1_chr19_+_39936221 AK295137 AK296117 AK302954 Y12790	430	+	TSC_hg19_v1_chr19_+_39936247 U56402	448	+	DQ893449|RPS16|6217|ribosomal protein S16##DQ896219|RPS16|6217|ribosomal protein S16##BC024970|RPS16|6217|ribosomal protein S16##BC007977|RPS16|6217|ribosomal protein S16##BC071674|RPS16|6217|ribosomal protein S16##M60854|RPS16|6217|ribosomal protein S16##BC095429|RPS16|6217|ribosomal protein S16##BC004324|RPS16|6217|ribosomal protein S16##AK055869|RPS16|6217|ribosomal protein S16##AK315498|RPS16|6217|ribosomal protein S16##D28392|RPS16|6217|ribosomal protein S16##NM_001020|RPS16|6217|ribosomal protein S16##AK024429|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_022835|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_001111020|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130824|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001130825|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AB000516|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK295137|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK296117|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AK302954|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##Y12790|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##U56402|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)	1.486737	0.0	denovo_WM_7:-48:0.301	denovo_WM_7:-68:0.841
chr16	10369563	10369668	reg1012350.p2	4.312	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-92938	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-93427	-	BC143273 U09002 NM_001134408	-93782	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	110302	+	NM_024997 BC137079 BC144468	153125	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	304875	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	0.956537	0.0	denovo_WM_7:-50:0.621
chr22	17738741	17738878	reg1005914.p1	4.312	+	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-38446	-	AF190746 NM_017424	-48031	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-58295	-	TSC_hg19_v1_chr22_-_17747522 AF277398	8762	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	304410	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	372636	-	AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.470861	0.0	denovo_WM_7:-17:0.460
chr2	96922396	96922478	reg1013238.p2	4.312	+	BC101730 BC101732 NM_001037228	-16461	+	TSC_hg19_v1_chr2_-_96874588 NM_020151	-47839	-	AF270647 TSC_hg19_v1_chr2_-_96874561 BC012774 BC014076 BC012793 BC007894 BC009998 BC032106 BC014274 BC003028 BC008894 BC013279	-47903	-	TSC_hg19_v1_chr2_-_96931700 BC039892	9250	-	TSC_hg19_v1_chr2_-_96931736 AX775835 BC028575 AK000514 AK293276	9292	-	TSC_hg19_v1_chr2_-_96931748 NM_001193304 NM_017849	9318	-	BC101730|LOC285033|285033|uncharacterized LOC285033##BC101732|LOC285033|285033|uncharacterized LOC285033##NM_001037228|LOC285033|285033|uncharacterized LOC285033##NM_020151|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AF270647|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012774|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014076|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012793|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC007894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC009998|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC032106|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014274|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC003028|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC008894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC013279|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC039892|TMEM127|55654|transmembrane protein 127##BC028575|TMEM127|55654|transmembrane protein 127##AK000514|TMEM127|55654|transmembrane protein 127##AK293276|TMEM127|55654|transmembrane protein 127##NM_001193304|TMEM127|55654|transmembrane protein 127##NM_017849|TMEM127|55654|transmembrane protein 127	0.07418	0.0	
chr6	130358479	130358626	reg1014552.p1	4.312	+	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	-18827	+	NM_001010876	-176137	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	-327226	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	177903	-	AK091882 AX747235 NM_001017373	185546	-	AB052099 NM_052913	399709	+	AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A	0.184265	0.389231	CTCF.p2:-14:0.389
chr6	22025353	22025469	reg1012883.p1	4.312	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-358752	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-431039	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1490688	+	BC015850 NM_000948	272318	-	X54394 X54393 GQ305133 M58594 NM_001163558	277636	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	544314	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	0.046453	0.0	
chr15	35336077	35336192	reg1010571.p1	4.311	+	NM_014106 TSC_hg19_v1_chr15_-_35280498	-55622	-	TSC_hg19_v1_chr15_-_35280489 BC071603 AK291438	-55680	-	AB384497 AK291615 BC127111 BC127112 TSC_hg19_v1_chr15_-_35261899 AB011132 AK315815 BX647820 EF553519 NM_014691	-74207	-	CU688170 TSC_hg19_v1_chr15_-_35838365 BC066652 AK094007 AL833427 AX748407 AK125017 NM_001141972 NM_080650	502252	-	TSC_hg19_v1_chr15_+_36871914 NM_001130010 AK026504 BC006254	1535765	+	NM_032499	1596671	+	NM_014106|ZNF770|54989|zinc finger protein 770##BC071603|ZNF770|54989|zinc finger protein 770##AK291438|ZNF770|54989|zinc finger protein 770##AK291615|AQR|9716|aquarius homolog (mouse)##BC127111|AQR|9716|aquarius homolog (mouse)##BC127112|AQR|9716|aquarius homolog (mouse)##AB011132|AQR|9716|aquarius homolog (mouse)##AK315815|AQR|9716|aquarius homolog (mouse)##BX647820|AQR|9716|aquarius homolog (mouse)##EF553519|AQR|9716|aquarius homolog (mouse)##NM_014691|AQR|9716|aquarius homolog (mouse)##BC066652|ATPBD4|89978|ATP binding domain 4##AK094007|ATPBD4|89978|ATP binding domain 4##AL833427|ATPBD4|89978|ATP binding domain 4##AK125017|ATPBD4|89978|ATP binding domain 4##NM_001141972|ATPBD4|89978|ATP binding domain 4##NM_080650|ATPBD4|89978|ATP binding domain 4##NM_001130010|C15orf41|84529|chromosome 15 open reading frame 41##AK026504|C15orf41|84529|chromosome 15 open reading frame 41##BC006254|C15orf41|84529|chromosome 15 open reading frame 41##NM_032499|C15orf41|84529|chromosome 15 open reading frame 41	0.999136	0.0	denovo_WM_7:32:0.739
chr3	100181899	100182032	reg1010728.p1	4.311	+	BC052994 BC065555 NM_014820 AK302796	-61712	-	BC040562 NM_001085451	-61929	+	AB018262 BC003633 TSC_hg19_v1_chr3_-_100119948	-62037	-	TSC_hg19_v1_chr3_+_100211440 AK000996 AY450392 NM_018004	29488	+	TSC_hg19_v1_chr3_+_100211558 AK129789	29618	+	BC040355 TSC_hg19_v1_chr3_+_100238088	56110	+	BC052994|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC065555|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##NM_014820|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AK302796|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC040562|LNP1|348801|leukemia NUP98 fusion partner 1##NM_001085451|LNP1|348801|leukemia NUP98 fusion partner 1##AB018262|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##BC003633|TOMM70A|9868|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)##AK000996|TMEM45A|55076|transmembrane protein 45A##AY450392|TMEM45A|55076|transmembrane protein 45A##NM_018004|TMEM45A|55076|transmembrane protein 45A##AK129789|TMEM45A|55076|transmembrane protein 45A##BC040355|TMEM45A|55076|transmembrane protein 45A	1.06914	0.146855	denovo_WM_7:91:0.258	denovo_WM_7:107:0.467
chr4	170664527	170664623	reg1013546.p1	4.311	+	AK127483 NM_001243374 TSC_hg19_v1_chr4_+_170581295	-83320	+	TSC_hg19_v1_chr4_+_170541735 BC070318 AK304362 BC054877 BC026256 BC136510	-122718	+	TSC_hg19_v1_chr4_+_170541724 BX647119	-122867	+	AB528091 AM392880 TSC_hg19_v1_chr4_-_170679066 AK000541 AL136673 BC010367 NM_017867	14497	-	BC066912 AF327560 AK308263 NM_001009554	260347	-	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	282930	-	AK127483|CLCN3|1182|chloride channel 3##NM_001243374|CLCN3|1182|chloride channel 3##AK304362|CLCN3|1182|chloride channel 3##BC054877|CLCN3|1182|chloride channel 3##BC026256|CLCN3|1182|chloride channel 3##BC136510|CLCN3|1182|chloride channel 3##BX647119|CLCN3|1182|chloride channel 3##AM392880|C4orf27|54969|chromosome 4 open reading frame 27##AK000541|C4orf27|54969|chromosome 4 open reading frame 27##AL136673|C4orf27|54969|chromosome 4 open reading frame 27##BC010367|C4orf27|54969|chromosome 4 open reading frame 27##NM_017867|C4orf27|54969|chromosome 4 open reading frame 27##BC066912|MFAP3L|9848|microfibrillar-associated protein 3-like##AF327560|MFAP3L|9848|microfibrillar-associated protein 3-like##AK308263|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001009554|MFAP3L|9848|microfibrillar-associated protein 3-like##AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like	1.332415	0.0	denovo_WM_7:-6:0.283	denovo_WM_7:8:0.220
chr5	142975061	142975187	reg1013527.p1	4.311	+	NM_001018074 NM_001018075 NM_001018077	-160048	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-190958	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-191092	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	216634	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	575011	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	575052	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr16	10968821	10968936	reg1012652.p1	4.310	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-56330	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-131174	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-180113	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	2234	+	BC071683 TSC_hg19_v1_chr16_-_11036171	67288	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	67357	-	BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)	0.977633	0.0	denovo_WM_7:-42:0.344	denovo_WM_7:-45:0.241
chr18	48724703	48724828	reg1012650.p2	4.310	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-725	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-1053	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-1539	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	1141776	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	1142348	+	TSC_hg19_v1_chr18_-_51690988 AL110266	2966227	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	0.999021	0.0	denovo_WM_7:33:0.314	denovo_WM_7:36:0.495
chr9	7799211	7799341	reg1012093.p1	4.310	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	-1041237	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	-1041609	+	AK310439 NM_001146696	-1078414	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	439	-	TSC_hg19_v1_chr9_+_8713275 AY779046	914016	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	934643	-	AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123##AY779046|RPL18A|6142|ribosomal protein L18a##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D	0.995174	0.0	denovo_WM_7:12:0.379	denovo_WM_7:13:0.442
chr11	20000106	20000244	reg1010357.p1	4.309	+	TSC_hg19_v1_chr11_+_19734821 AB037840 BC150290 NM_001244963 NM_145117 NM_182964 AB063116	-265309	+	AB063115 NM_001111018 AJ488205	-627860	+	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	-736974	-	TSC_hg19_v1_chr11_+_20044396 AK298346 AJ488208	44213	+	TSC_hg19_v1_chr11_+_20049136 AK307574	48957	+	AK290458 TSC_hg19_v1_chr11_+_20070637	70448	+	AB037840|NAV2|89797|neuron navigator 2##BC150290|NAV2|89797|neuron navigator 2##NM_001244963|NAV2|89797|neuron navigator 2##NM_145117|NAV2|89797|neuron navigator 2##NM_182964|NAV2|89797|neuron navigator 2##AB063116|NAV2|89797|neuron navigator 2##AB063115|NAV2|89797|neuron navigator 2##NM_001111018|NAV2|89797|neuron navigator 2##AJ488205|NAV2|89797|neuron navigator 2##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8##AK298346|NAV2|89797|neuron navigator 2##AJ488208|NAV2|89797|neuron navigator 2##AK307574|NAV2|89797|neuron navigator 2##AK290458|NAV2|89797|neuron navigator 2	0.998225	0.0	
chr16	68774991	68775146	reg1013735.p1	4.309	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-3757	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-3823	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-3849	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	102437	+	AK291400 NM_001199280	364398	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	365072	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	0.0	0.0	
chr2	20102967	20103075	reg1011951.p1	4.309	+	CU691276 BC070381 TSC_hg19_v1_chr2_-_20101717 BC057850 NM_001008237	-1340	-	TSC_hg19_v1_chr2_-_20101456 BC050088	-1593	-	AK022396 BC068572 TSC_hg19_v1_chr2_+_20068650 AK097927	-34386	+	AB385451 AK122917 AK315094 BC036659 NM_001006657 NM_020779 AB037757 TSC_hg19_v1_chr2_-_20189911	86822	-	AJ224741 BC139907 TSC_hg19_v1_chr2_-_20212430 EU541440	109399	-	TSC_hg19_v1_chr2_-_20212456 AK290856 NM_002381	109444	-	BC070381|TTC32|130502|tetratricopeptide repeat domain 32##BC057850|TTC32|130502|tetratricopeptide repeat domain 32##NM_001008237|TTC32|130502|tetratricopeptide repeat domain 32##AK022396|FLJ12334|400946|uncharacterized LOC400946##BC068572|FLJ12334|400946|uncharacterized LOC400946##AK097927|FLJ12334|400946|uncharacterized LOC400946##AK122917|WDR35|57539|WD repeat domain 35##AK315094|WDR35|57539|WD repeat domain 35##BC036659|WDR35|57539|WD repeat domain 35##NM_001006657|WDR35|57539|WD repeat domain 35##NM_020779|WDR35|57539|WD repeat domain 35##AB037757|WDR35|57539|WD repeat domain 35##AJ224741|MATN3|4148|matrilin 3##BC139907|MATN3|4148|matrilin 3##EU541440|MATN3|4148|matrilin 3##AK290856|MATN3|4148|matrilin 3##NM_002381|MATN3|4148|matrilin 3	0.915429	0.0	denovo_WM_7:-77:0.248	denovo_WM_7:-80:0.387
chr7	128101911	128102056	reg1010702.p1	4.309	+	TSC_hg19_v1_chr7_+_128095931 NM_001098786 NM_013332 AF144755 AK024729 AK222583 BC008573 BC001863 BC093742 BC112183	-6017	+	TSC_hg19_v1_chr7_-_128050037 AK092452 BC033622 AK054667 AK122994 NM_000883 NM_001102605 NM_001142576 NM_183243	-51946	-	AK131294 TSC_hg19_v1_chr7_-_128049984 CR933672	-52003	-	NM_018396 TSC_hg19_v1_chr7_+_128116813 AK302775 BC107586 AK002212 BC064929 BC121115 BC121116 AK299960	14854	+	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	210363	+	TSC_hg19_v1_chr7_+_128349114 AK093161 AK302221 AX747964 BC040906 AK310426	247144	+	NM_001098786|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_013332|HILPDA|29923|hypoxia inducible lipid droplet-associated##AF144755|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK024729|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK222583|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC008573|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC001863|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC093742|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC112183|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK092452|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC033622|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054667|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK122994|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_000883|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001102605|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142576|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_183243|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK131294|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##CR933672|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_018396|METTL2B|55798|methyltransferase like 2B##AK302775|METTL2B|55798|methyltransferase like 2B##BC107586|METTL2B|55798|methyltransferase like 2B##AK002212|METTL2B|55798|methyltransferase like 2B##BC064929|METTL2B|55798|methyltransferase like 2B##BC121115|METTL2B|55798|methyltransferase like 2B##BC121116|METTL2B|55798|methyltransferase like 2B##AK299960|METTL2B|55798|methyltransferase like 2B##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2##AK093161|FAM71F1|84691|family with sequence similarity 71, member F1##AK302221|FAM71F1|84691|family with sequence similarity 71, member F1##BC040906|FAM71F1|84691|family with sequence similarity 71, member F1##AK310426|FAM71F1|84691|family with sequence similarity 71, member F1	1.014679	0.0	
chr1	161714408	161714489	reg1008303.p2	4.308	+	AY670683 AY670684 AY670685 AY670686 AY670687 NM_001002901 AY786314	-21993	+	AF531423 NM_001184866 NM_001184867 NM_001184870 NM_001184871 NM_001184872 NM_001184873 NM_032738	-37687	+	NM_001002273 NM_001002274 NM_001002275 NM_001190828 NM_004001 AF543826 M31933 X17653 AK308150 AB209585 BC062629 X52473 X62573 BC146678 M28696 M31934 BC031992 BC141826 U90941 AB590317 BC148273 CR407635 CU689254 DQ891344 DQ894525 U87560 U87561 U87562 U87563 U87564 U87565 U87566 U87567 U87568 U87569 U87570 U87571 U87572 U87573 U87574 U87575 U87576 U87577 M31935	-81456	+	TSC_hg19_v1_chr1_+_161719575 BC006286 AF119226 NM_007240 DQ892766 DQ896011 CU675333 BT006633	5118	+	NM_007348 TSC_hg19_v1_chr1_+_161736080 AB015856	21622	+	AF005887 AK290498 TSC_hg19_v1_chr1_+_161736109	21662	+	AY670683|FCRLB|127943|Fc receptor-like B##AY670684|FCRLB|127943|Fc receptor-like B##AY670685|FCRLB|127943|Fc receptor-like B##AY670686|FCRLB|127943|Fc receptor-like B##AY670687|FCRLB|127943|Fc receptor-like B##NM_001002901|FCRLB|127943|Fc receptor-like B##AY786314|FCRLB|127943|Fc receptor-like B##AF531423|FCRLA|84824|Fc receptor-like A##NM_001184866|FCRLA|84824|Fc receptor-like A##NM_001184867|FCRLA|84824|Fc receptor-like A##NM_001184870|FCRLA|84824|Fc receptor-like A##NM_001184871|FCRLA|84824|Fc receptor-like A##NM_001184872|FCRLA|84824|Fc receptor-like A##NM_001184873|FCRLA|84824|Fc receptor-like A##NM_032738|FCRLA|84824|Fc receptor-like A##NM_001002273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002274|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002275|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001190828|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_004001|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AF543826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31933|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X17653|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AK308150|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AB209585|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X52473|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X62573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC146678|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M28696|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31934|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC031992|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC141826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U90941|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##BC148273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##CR407635|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##DQ891344|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##DQ894525|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87560|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87561|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87562|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87563|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87564|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87565|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87566|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87567|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87568|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87569|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87570|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87571|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87572|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87574|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87575|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87576|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87577|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31935|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC006286|DUSP12|11266|dual specificity phosphatase 12##AF119226|DUSP12|11266|dual specificity phosphatase 12##NM_007240|DUSP12|11266|dual specificity phosphatase 12##DQ892766|DUSP12|11266|dual specificity phosphatase 12##DQ896011|DUSP12|11266|dual specificity phosphatase 12##BT006633|DUSP12|11266|dual specificity phosphatase 12##NM_007348|ATF6|22926|activating transcription factor 6##AB015856|ATF6|22926|activating transcription factor 6##AF005887|ATF6|22926|activating transcription factor 6##AK290498|ATF6|22926|activating transcription factor 6	1.157041	0.0	
chr1	27204588	27204716	reg1012162.p2	4.308	+	BC023552 AF029082 NM_006142 TSC_hg19_v1_chr1_+_27189639 BC001550 BC000329 BC002995 BC000995 AB464718 M93010 DQ894162 CU674492 CR541905 CR541926	-14987	+	TSC_hg19_v1_chr1_+_27153178 BC066776 NM_032283	-51455	+	AK000484 AK225521 AK301626 NM_001202554 AK056539	-89971	+	CU675813 AY364261 TSC_hg19_v1_chr1_-_27216757 BC007815 BC008634 BC020272	12023	-	TSC_hg19_v1_chr1_-_27216775 AK022535 AY358864	12120	-	TSC_hg19_v1_chr1_-_27216794 AK001211 NM_018066	12174	-	BC023552|SFN|2810|stratifin##AF029082|SFN|2810|stratifin##NM_006142|SFN|2810|stratifin##BC001550|SFN|2810|stratifin##BC000329|SFN|2810|stratifin##BC002995|SFN|2810|stratifin##BC000995|SFN|2810|stratifin##M93010|SFN|2810|stratifin##DQ894162|SFN|2810|stratifin##CR541905|SFN|2810|stratifin##CR541926|SFN|2810|stratifin##BC066776|ZDHHC18|84243|zinc finger, DHHC-type containing 18##NM_032283|ZDHHC18|84243|zinc finger, DHHC-type containing 18##AK000484|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK225521|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK301626|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_001202554|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK056539|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AY364261|GPN2|54707|GPN-loop GTPase 2##BC007815|GPN2|54707|GPN-loop GTPase 2##BC008634|GPN2|54707|GPN-loop GTPase 2##BC020272|GPN2|54707|GPN-loop GTPase 2##AK022535|GPN2|54707|GPN-loop GTPase 2##AY358864|GPN2|54707|GPN-loop GTPase 2##AK001211|GPN2|54707|GPN-loop GTPase 2##NM_018066|GPN2|54707|GPN-loop GTPase 2	0.0	0.989643	CTCF.p2:-7:0.990
chr8	115311076	115311256	reg1001983.p4	4.308	+	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	-862037	-	AB114605 NM_198124	-921785	-	BC028739 AK313469 AF167082 NM_014379 AK297393	-4324200	-	TSC_hg19_v1_chr8_-_116680208 AK304046	1369054	-	BC125020 AK309357 TSC_hg19_v1_chr8_-_116681203 NM_014112	1369999	-	TSC_hg19_v1_chr8_-_116681365 AF183810	1370169	-	BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I##BC125020|TRPS1|7227|trichorhinophalangeal syndrome I##AK309357|TRPS1|7227|trichorhinophalangeal syndrome I##NM_014112|TRPS1|7227|trichorhinophalangeal syndrome I##AF183810|TRPS1|7227|trichorhinophalangeal syndrome I	0.90588	0.0	denovo_WM_7:91:0.837
chr1	63262066	63262246	reg1003580.p2	4.307	+	TSC_hg19_v1_chr1_+_63249807 NM_032852 NM_178221 AK027773 BC018678 BC033024 BC008395	-12343	+	DQ341187 TSC_hg19_v1_chr1_-_63154045 AK055401 NM_033407 AK292640	-108029	-	NM_014495 AK315304 TSC_hg19_v1_chr1_+_63063190 AK289426 BC007059 BC058287 AY358273 AF152562 AB590604 CU691298	-198945	+	AB464527 NM_012183	526573	+	TSC_hg19_v1_chr1_+_63789065 L12142	526928	+	NM_013339 AF063604 TSC_hg19_v1_chr1_+_63833313	571131	+	NM_032852|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##NM_178221|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##AK027773|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC018678|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC033024|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##BC008395|ATG4C|84938|ATG4 autophagy related 4 homolog C (S. cerevisiae)##DQ341187|DOCK7|85440|dedicator of cytokinesis 7##AK055401|DOCK7|85440|dedicator of cytokinesis 7##NM_033407|DOCK7|85440|dedicator of cytokinesis 7##AK292640|DOCK7|85440|dedicator of cytokinesis 7##NM_014495|ANGPTL3|27329|angiopoietin-like 3##AK315304|ANGPTL3|27329|angiopoietin-like 3##AK289426|ANGPTL3|27329|angiopoietin-like 3##BC007059|ANGPTL3|27329|angiopoietin-like 3##BC058287|ANGPTL3|27329|angiopoietin-like 3##AY358273|ANGPTL3|27329|angiopoietin-like 3##AF152562|ANGPTL3|27329|angiopoietin-like 3##NM_012183|FOXD3|27022|forkhead box D3##L12142|FOXD3|27022|forkhead box D3##NM_013339|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AF063604|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)	0.01883	0.0	
chr19	17216112	17216282	reg1013306.p2	4.307	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-29604	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-29876	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-78657	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	109975	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	110008	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	120837	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	1.031303	0.0	
chr19	6767702	6767833	reg1002240.p2	4.307	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-260	-	TSC_hg19_v1_chr19_+_6739712 NM_004240 AK313296 AB007845 AB072596 AK223109 AF502289 AJ000414 AY081141 BC013002 CU680464 DQ892747 DQ895993 AF380114 BT006698 BT020167 BT020171 CR536513	-28033	+	TSC_hg19_v1_chr19_-_6737615 BC146909 AX775899 NM_001080452	-30149	-	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	4957	+	TSC_hg19_v1_chr19_+_6772811 AB590871	5041	+	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	119830	+	AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##NM_004240|TRIP10|9322|thyroid hormone receptor interactor 10##AK313296|TRIP10|9322|thyroid hormone receptor interactor 10##AB007845|TRIP10|9322|thyroid hormone receptor interactor 10##AB072596|TRIP10|9322|thyroid hormone receptor interactor 10##AK223109|TRIP10|9322|thyroid hormone receptor interactor 10##AF502289|TRIP10|9322|thyroid hormone receptor interactor 10##AJ000414|TRIP10|9322|thyroid hormone receptor interactor 10##AY081141|TRIP10|9322|thyroid hormone receptor interactor 10##BC013002|TRIP10|9322|thyroid hormone receptor interactor 10##DQ892747|TRIP10|9322|thyroid hormone receptor interactor 10##DQ895993|TRIP10|9322|thyroid hormone receptor interactor 10##AF380114|TRIP10|9322|thyroid hormone receptor interactor 10##BT006698|TRIP10|9322|thyroid hormone receptor interactor 10##BT020167|TRIP10|9322|thyroid hormone receptor interactor 10##BT020171|TRIP10|9322|thyroid hormone receptor interactor 10##CR536513|TRIP10|9322|thyroid hormone receptor interactor 10##BC146909|GPR108|56927|G protein-coupled receptor 108##AX775899|GPR108|56927|G protein-coupled receptor 108##NM_001080452|GPR108|56927|G protein-coupled receptor 108##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1	0.0	0.0	
chr2	109247960	109248127	reg1012467.p1	4.307	+	TSC_hg19_v1_chr2_+_109237706 AK304260 NM_001193484 AF527760 AK310547	-10340	+	TSC_hg19_v1_chr2_+_109223602 AF527762 NM_001193482	-24426	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	-43074	+	AF527759 NM_001193485	23224	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	23445	+	TSC_hg19_v1_chr2_+_109335970 D42063 NM_006267	87895	+	AK304260|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193484|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527760|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK310547|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527762|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193482|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527759|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193485|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3##D42063|RANBP2|5903|RAN binding protein 2##NM_006267|RANBP2|5903|RAN binding protein 2	0.999935	0.0	denovo_WM_7:-29:0.244	denovo_WM_7:-30:0.629
chr2	156059861	156059954	reg1011963.p1	4.307	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-504718	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-1331463	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1724656	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1126783	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1129256	-	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	1232051	+	NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	0.0	0.0	
chr22	24963726	24963882	reg1012298.p1	4.307	+	TSC_hg19_v1_chr22_+_24951954 BC000457 BC003150 U15009 AK296173	-11840	+	TSC_hg19_v1_chr22_+_24951942 BC034447 CR456583	-11867	+	TSC_hg19_v1_chr22_-_24951860 AK098754	-11931	-	M24903 NM_013430	15913	+	TSC_hg19_v1_chr22_-_24989036 BC032388 BC108684 NM_207644 AK097054	25208	-	AL832738 TSC_hg19_v1_chr22_+_24999158 NM_001032364 BC035341 NM_005265 L20494 J04131	35389	+	BC000457|SNRPD3|6634|small nuclear ribonucleoprotein D3 polypeptide 18kDa##BC003150|SNRPD3|6634|small nuclear ribonucleoprotein D3 polypeptide 18kDa##U15009|SNRPD3|6634|small nuclear ribonucleoprotein D3 polypeptide 18kDa##AK296173|SNRPD3|6634|small nuclear ribonucleoprotein D3 polypeptide 18kDa##BC034447|SNRPD3|6634|small nuclear ribonucleoprotein D3 polypeptide 18kDa##CR456583|SNRPD3|6634|small nuclear ribonucleoprotein D3 polypeptide 18kDa##AK098754|C22orf13|83606|chromosome 22 open reading frame 13##M24903|GGT1|2678|gamma-glutamyltransferase 1##NM_013430|GGT1|2678|gamma-glutamyltransferase 1##BC032388|FAM211B|388886|family with sequence similarity 211, member B##BC108684|FAM211B|388886|family with sequence similarity 211, member B##NM_207644|FAM211B|388886|family with sequence similarity 211, member B##AK097054|FAM211B|388886|family with sequence similarity 211, member B##AL832738|GGT1|2678|gamma-glutamyltransferase 1##NM_001032364|GGT1|2678|gamma-glutamyltransferase 1##BC035341|GGT1|2678|gamma-glutamyltransferase 1##NM_005265|GGT1|2678|gamma-glutamyltransferase 1##L20494|GGT1|2678|gamma-glutamyltransferase 1##J04131|GGT1|2678|gamma-glutamyltransferase 1	0.0	0.0	
chr2	54190206	54190324	reg1007876.p2	4.307	+	AF072693 BC110915 TSC_hg19_v1_chr2_-_54087105 AK314885 NM_001164165 NM_006794	-103147	-	NM_001127397 NM_001127398 NM_015701 TSC_hg19_v1_chr2_+_54014180 AY358717 AK001913 AY453410 BC013129 BC022228 AK315477 DQ894762	-176058	+	AK056069 NM_001201965 BC009569 AB209795 TSC_hg19_v1_chr2_-_54014091 AK000985 AK303133 AK001283 NM_016115 NM_145863	-176187	-	D38521 TSC_hg19_v1_chr2_-_54197945 AY894756 AY894754 AY894755 NM_014614	7616	-	TSC_hg19_v1_chr2_-_54198154 AB621805	7867	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	152329	+	AF072693|GPR75|10936|G protein-coupled receptor 75##BC110915|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##AK314885|GPR75|10936|G protein-coupled receptor 75##NM_001164165|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##NM_006794|GPR75|10936|G protein-coupled receptor 75##NM_001127397|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_001127398|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_015701|ERLEC1|27248|endoplasmic reticulum lectin 1##AY358717|ERLEC1|27248|endoplasmic reticulum lectin 1##AK001913|ERLEC1|27248|endoplasmic reticulum lectin 1##AY453410|ERLEC1|27248|endoplasmic reticulum lectin 1##BC013129|ERLEC1|27248|endoplasmic reticulum lectin 1##BC022228|ERLEC1|27248|endoplasmic reticulum lectin 1##AK315477|ERLEC1|27248|endoplasmic reticulum lectin 1##DQ894762|ERLEC1|27248|endoplasmic reticulum lectin 1##AK056069|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_001201965|ASB3|51130|ankyrin repeat and SOCS box containing 3##BC009569|ASB3|51130|ankyrin repeat and SOCS box containing 3##AB209795|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK000985|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK303133|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK001283|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_016115|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_145863|ASB3|51130|ankyrin repeat and SOCS box containing 3##D38521|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894756|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894754|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894755|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_014614|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type	0.0	0.0	
chr5	81126599	81126694	reg1009565.p1	4.307	+	TSC_hg19_v1_chr5_-_81046990 NM_012446	-79538	-	TSC_hg19_v1_chr5_-_81046929 AB528651 CU677799 DQ891620 DQ894812 EU176592 EU831646 EU831730 AK293544 AK074537 AK294864 AK297494 AF161465 AF077048 AK299858 AK312337 CR936787 AL080076 BC017020	-79747	-	BC075011 BC075010 AK122960 AB078619 BC089437 NM_130767 TSC_hg19_v1_chr5_-_80690052	-436644	-	TSC_hg19_v1_chr5_+_81267857 AK024016 AK225969 AK315752 NM_001131028 NM_031482 BC029268 BC004551 BC027718	141199	+	AF318326 TSC_hg19_v1_chr5_+_81267992	141344	+	TSC_hg19_v1_chr5_+_81268100 AL136912	141452	+	NM_012446|SSBP2|23635|single-stranded DNA binding protein 2##DQ891620|SSBP2|23635|single-stranded DNA binding protein 2##DQ894812|SSBP2|23635|single-stranded DNA binding protein 2##EU176592|SSBP2|23635|single-stranded DNA binding protein 2##EU831646|SSBP2|23635|single-stranded DNA binding protein 2##EU831730|SSBP2|23635|single-stranded DNA binding protein 2##AK293544|SSBP2|23635|single-stranded DNA binding protein 2##AK074537|SSBP2|23635|single-stranded DNA binding protein 2##AK294864|SSBP2|23635|single-stranded DNA binding protein 2##AK297494|SSBP2|23635|single-stranded DNA binding protein 2##AF161465|SSBP2|23635|single-stranded DNA binding protein 2##AF077048|SSBP2|23635|single-stranded DNA binding protein 2##AK299858|SSBP2|23635|single-stranded DNA binding protein 2##AK312337|SSBP2|23635|single-stranded DNA binding protein 2##CR936787|SSBP2|23635|single-stranded DNA binding protein 2##AL080076|SSBP2|23635|single-stranded DNA binding protein 2##BC017020|SSBP2|23635|single-stranded DNA binding protein 2##BC075011|ACOT12|134526|acyl-CoA thioesterase 12##BC075010|ACOT12|134526|acyl-CoA thioesterase 12##AK122960|ACOT12|134526|acyl-CoA thioesterase 12##AB078619|ACOT12|134526|acyl-CoA thioesterase 12##BC089437|ACOT12|134526|acyl-CoA thioesterase 12##NM_130767|ACOT12|134526|acyl-CoA thioesterase 12##AK024016|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK225969|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AK315752|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_001131028|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##NM_031482|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC029268|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC004551|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC027718|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AF318326|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##AL136912|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)	0.048221	0.0	
chr6	15023027	15023165	reg1003335.p1	4.307	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-905074	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-905191	+	NM_001251901	-905610	+	TSC_hg19_v1_chr6_+_15245702 AK302624	222621	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	223316	+	BC033996 TSC_hg19_v1_chr6_-_15248900	225805	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	1.993021	0.0	denovo_WM_7:-25:0.538	denovo_WM_7:-26:0.269	denovo_WM_7:-40:0.329	denovo_WM_7:-41:0.598
chr7	74904319	74904448	reg1010752.p1	4.307	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	-36863	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-396009	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-414691	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	84187	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	120582	+	AK126486 TSC_hg19_v1_chr7_+_75039644 BC044928 BC103750	135271	+	NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC044928|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##BC103750|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1	0.999365	0.0	
chr10	88150215	88150326	reg1014602.p2	4.306	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-24007	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-1965575	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2018652	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	131224	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	131260	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	264124	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.999759	0.0	denovo_WM_7:-49:0.298	denovo_WM_7:-50:0.298	denovo_WM_7:-51:0.298
chr1	169662202	169662382	reg1006729.p1	4.306	+	M25322 AK312884 BC068533 NM_003005	-62930	-	TSC_hg19_v1_chr1_-_169555717 AK291613 AK300469 NM_000130	-106553	-	AB385005 AK226079 M14335 TSC_hg19_v1_chr1_-_169555700 M16967	-106628	-	AB528958 CU676702 DQ891376 DQ894554 AJ246000 X16150 X17519 BC020758 X16070 AK225713 AK312673 M25280 TSC_hg19_v1_chr1_-_169680762 NM_000655	18467	-	BC131551 M24736 M30640 BC142677 BC142711 AK314214 NM_000450 TSC_hg19_v1_chr1_-_169703221	40907	-	AL035369 NM_033418 AK313909	101740	-	M25322|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##AK312884|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##BC068533|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##NM_003005|SELP|6403|selectin P (granule membrane protein 140kDa, antigen CD62)##AK291613|F5|2153|coagulation factor V (proaccelerin, labile factor)##AK300469|F5|2153|coagulation factor V (proaccelerin, labile factor)##NM_000130|F5|2153|coagulation factor V (proaccelerin, labile factor)##AK226079|F5|2153|coagulation factor V (proaccelerin, labile factor)##M14335|F5|2153|coagulation factor V (proaccelerin, labile factor)##M16967|F5|2153|coagulation factor V (proaccelerin, labile factor)##DQ891376|SELL|6402|selectin L##DQ894554|SELL|6402|selectin L##AJ246000|SELL|6402|selectin L##X16150|SELL|6402|selectin L##X17519|SELL|6402|selectin L##BC020758|SELL|6402|selectin L##X16070|SELL|6402|selectin L##AK225713|SELL|6402|selectin L##AK312673|SELL|6402|selectin L##M25280|SELL|6402|selectin L##NM_000655|SELL|6402|selectin L##BC131551|SELE|6401|selectin E##M24736|SELE|6401|selectin E##M30640|SELE|6401|selectin E##BC142677|SELE|6401|selectin E##BC142711|SELE|6401|selectin E##AK314214|SELE|6401|selectin E##NM_000450|SELE|6401|selectin E##AL035369|METTL18|92342|methyltransferase like 18##NM_033418|METTL18|92342|methyltransferase like 18##AK313909|METTL18|92342|methyltransferase like 18	0.994826	0.0	denovo_WM_7:24:0.736
chr17	40757720	40757886	reg1006967.p1	4.306	+	TSC_hg19_v1_chr17_-_40729727 AB528689 GQ851964 GQ851965 AF440240 AB030304 NM_013290 NM_016556 FJ952179 FJ952180 FJ952181 FJ952182 FJ952183 BC008792	-28055	-	TSC_hg19_v1_chr17_+_40719130 AF203978 AK314378 AB527756 BT009812	-38665	+	TSC_hg19_v1_chr17_+_40719119 NM_170607 NM_198204 NM_198205 AF213666 AF213667 AF213668 BC010689 AK290258 AK296114 BC014537 AK000150 AK303221 AK309628 AK315432	-38707	+	BX647175 CU690614 TSC_hg19_v1_chr17_-_40761363	3548	-	NM_001070	3554	+	TSC_hg19_v1_chr17_-_40761382 AK294791	3572	-	GQ851964|PSMC3IP|29893|PSMC3 interacting protein##GQ851965|PSMC3IP|29893|PSMC3 interacting protein##AF440240|PSMC3IP|29893|PSMC3 interacting protein##AB030304|PSMC3IP|29893|PSMC3 interacting protein##NM_013290|PSMC3IP|29893|PSMC3 interacting protein##NM_016556|PSMC3IP|29893|PSMC3 interacting protein##FJ952179|PSMC3IP|29893|PSMC3 interacting protein##FJ952180|PSMC3IP|29893|PSMC3 interacting protein##FJ952181|PSMC3IP|29893|PSMC3 interacting protein##FJ952182|PSMC3IP|29893|PSMC3 interacting protein##FJ952183|PSMC3IP|29893|PSMC3 interacting protein##BC008792|PSMC3IP|29893|PSMC3 interacting protein##AF203978|MLX|6945|MAX-like protein X##AK314378|MLX|6945|MAX-like protein X##BT009812|MLX|6945|MAX-like protein X##NM_170607|MLX|6945|MAX-like protein X##NM_198204|MLX|6945|MAX-like protein X##NM_198205|MLX|6945|MAX-like protein X##AF213666|MLX|6945|MAX-like protein X##AF213667|MLX|6945|MAX-like protein X##AF213668|MLX|6945|MAX-like protein X##BC010689|MLX|6945|MAX-like protein X##AK290258|MLX|6945|MAX-like protein X##AK296114|MLX|6945|MAX-like protein X##BC014537|MLX|6945|MAX-like protein X##AK000150|MLX|6945|MAX-like protein X##AK303221|MLX|6945|MAX-like protein X##AK309628|MLX|6945|MAX-like protein X##AK315432|MLX|6945|MAX-like protein X##BX647175|FAM134C|162427|family with sequence similarity 134, member C##NM_001070|TUBG1|7283|tubulin, gamma 1##AK294791|FAM134C|162427|family with sequence similarity 134, member C	0.0	0.0	
chr21	35389669	35389792	reg1012412.p1	4.306	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-101638	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-199060	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-374875	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	56111	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	56199	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	346616	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	0.990287	0.0	denovo_WM_7:-28:0.895
chr2	175387419	175387544	reg1012599.p1	4.306	+	BC036681 AK091200 AK315125 AX746845 BC028730 AL834154 TSC_hg19_v1_chr2_-_175351812 AK307896 BX537947 NM_001033045 NM_152529 BC035037	-35684	-	BC119684 BC119685 BC119685 TSC_hg19_v1_chr2_+_175260519	-126923	+	TSC_hg19_v1_chr2_+_175260466 NM_001193528 NM_024583 AK296558 AK295357 AK295357 AK057912 AK057912 BC007344	-127004	+	TSC_hg19_v1_chr2_-_175462533 BC002914 X86019	75000	-	TSC_hg19_v1_chr2_-_175499308 AF031588 NM_003387 AK301271 AK304194	111816	-	TSC_hg19_v1_chr2_-_175547635 BC110288 BX640870 NM_001077269	160273	-	BC036681|GPR155|151556|G protein-coupled receptor 155##AK091200|GPR155|151556|G protein-coupled receptor 155##AK315125|GPR155|151556|G protein-coupled receptor 155##BC028730|GPR155|151556|G protein-coupled receptor 155##AL834154|GPR155|151556|G protein-coupled receptor 155##AK307896|GPR155|151556|G protein-coupled receptor 155##BX537947|GPR155|151556|G protein-coupled receptor 155##NM_001033045|GPR155|151556|G protein-coupled receptor 155##NM_152529|GPR155|151556|G protein-coupled receptor 155##BC035037|GPR155|151556|G protein-coupled receptor 155##BC119684|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##BC119685|SCRN3|79634|secernin 3##NM_001193528|SCRN3|79634|secernin 3##NM_024583|SCRN3|79634|secernin 3##AK296558|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK295357|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##AK057912|SCRN3|79634|secernin 3##BC002914|WIPF1|7456|WAS/WASL interacting protein family, member 1##X86019|WIPF1|7456|WAS/WASL interacting protein family, member 1##AF031588|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_003387|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK301271|WIPF1|7456|WAS/WASL interacting protein family, member 1##AK304194|WIPF1|7456|WAS/WASL interacting protein family, member 1##BC110288|WIPF1|7456|WAS/WASL interacting protein family, member 1##BX640870|WIPF1|7456|WAS/WASL interacting protein family, member 1##NM_001077269|WIPF1|7456|WAS/WASL interacting protein family, member 1	0.186374	0.020725	
chr22	20104925	20105028	reg1013905.p2	4.306	+	TSC_hg19_v1_chr22_+_20105027 D38076 NM_002882 AK223506 AK300927	-58	+	TSC_hg19_v1_chr22_-_20104748 AK304068 AK057029 NM_022727 NM_182984	-208	-	TSC_hg19_v1_chr22_-_20104718 BC017184	-265	-	TSC_hg19_v1_chr22_+_20105069 X83617	95	+	TSC_hg19_v1_chr22_+_20105076 AK293502 BC071998	108	+	TSC_hg19_v1_chr22_+_20105095 CR456556	130	+	D38076|RANBP1|5902|RAN binding protein 1##NM_002882|RANBP1|5902|RAN binding protein 1##AK223506|RANBP1|5902|RAN binding protein 1##AK304068|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##AK057029|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##NM_022727|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##NM_182984|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##BC017184|TRMT2A|27037|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)##X83617|RANBP1|5902|RAN binding protein 1##AK293502|RANBP1|5902|RAN binding protein 1##BC071998|RANBP1|5902|RAN binding protein 1##CR456556|RANBP1|5902|RAN binding protein 1	0.0	0.0	
chr4	148711058	148711238	reg1015198.p2	4.306	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	-57691	+	TSC_hg19_v1_chr4_+_148653238 AK123785	-57897	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	-105884	-	TSC_hg19_v1_chr4_-_149357955 AB587357	646834	-	TSC_hg19_v1_chr4_-_149363305 BC111758	652191	-	TSC_hg19_v1_chr4_-_149363539 AJ315514 M16801 AK304318 NM_000901 NM_001166104	652436	-	AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC111758|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AJ315514|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##M16801|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AK304318|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_000901|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_001166104|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2	0.997989	0.0	
chr5	142408818	142408921	reg1008139.p1	4.306	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-258561	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-258897	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-331298	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	373954	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	374237	-	BC015610 TSC_hg19_v1_chr5_-_142783214	374342	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.995721	0.0	
chr8	107669458	107669638	reg1011374.p1	4.306	+	AK296561 NM_001198532	-209397	+	TSC_hg19_v1_chr8_+_107282433 NM_001198533 NM_018002 AK124441 BC040619	-387125	+	AF119334 BC109222 BC109223 NM_012082	-1338402	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	440	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	567	+	AK303695 NM_001198534 NM_001198535 AB075503 AK302844 AK316153 FN650109	68807	+	AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##NM_001198533|OXR1|55074|oxidation resistance 1##NM_018002|OXR1|55074|oxidation resistance 1##AK124441|OXR1|55074|oxidation resistance 1##BC040619|OXR1|55074|oxidation resistance 1##AF119334|ZFPM2|23414|zinc finger protein, multitype 2##BC109222|ZFPM2|23414|zinc finger protein, multitype 2##BC109223|ZFPM2|23414|zinc finger protein, multitype 2##NM_012082|ZFPM2|23414|zinc finger protein, multitype 2##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1##AK303695|OXR1|55074|oxidation resistance 1##NM_001198534|OXR1|55074|oxidation resistance 1##NM_001198535|OXR1|55074|oxidation resistance 1##AB075503|OXR1|55074|oxidation resistance 1##AK302844|OXR1|55074|oxidation resistance 1##AK316153|OXR1|55074|oxidation resistance 1##FN650109|OXR1|55074|oxidation resistance 1	0.994073	0.0	denovo_WM_7:5:0.774
chr10	115837202	115837298	reg1013212.p2	4.305	+	NM_000684 J03019	-33441	+	TSC_hg19_v1_chr10_+_115614419 NM_198514 AK090631 AX746547	-222831	+	D42045 NM_014881 AK307187	-223334	-	TSC_hg19_v1_chr10_-_115933963 BC100670 BC103499 BC103504 BC105632 BC152306 BC107430 BC070368 BX537964 AK307517 AK092620 AX747632 BC020842 BC030557	96682	-	NM_018017	97113	-	AK122916 AL833340 NM_198795 BX648664 BC063133	101821	+	NM_000684|ADRB1|153|adrenergic, beta-1-, receptor##J03019|ADRB1|153|adrenergic, beta-1-, receptor##NM_198514|NHLRC2|374354|NHL repeat containing 2##AK090631|NHLRC2|374354|NHL repeat containing 2##D42045|DCLRE1A|9937|DNA cross-link repair 1A##NM_014881|DCLRE1A|9937|DNA cross-link repair 1A##BC100670|C10orf118|55088|chromosome 10 open reading frame 118##BC103499|C10orf118|55088|chromosome 10 open reading frame 118##BC103504|C10orf118|55088|chromosome 10 open reading frame 118##BC105632|C10orf118|55088|chromosome 10 open reading frame 118##BC152306|C10orf118|55088|chromosome 10 open reading frame 118##BC107430|C10orf118|55088|chromosome 10 open reading frame 118##BC070368|C10orf118|55088|chromosome 10 open reading frame 118##BX537964|C10orf118|55088|chromosome 10 open reading frame 118##AK307517|C10orf118|55088|chromosome 10 open reading frame 118##AK092620|C10orf118|55088|chromosome 10 open reading frame 118##BC020842|C10orf118|55088|chromosome 10 open reading frame 118##BC030557|C10orf118|55088|chromosome 10 open reading frame 118##NM_018017|C10orf118|55088|chromosome 10 open reading frame 118##AK122916|TDRD1|56165|tudor domain containing 1##AL833340|TDRD1|56165|tudor domain containing 1##NM_198795|TDRD1|56165|tudor domain containing 1##BX648664|TDRD1|56165|tudor domain containing 1##BC063133|TDRD1|56165|tudor domain containing 1	0.0	0.0	
chr10	11602598	11602667	reg1003907.p2	4.305	+	NM_001080491	-28359	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-395140	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-395186	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	51004	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	181766	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	262726	+	NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47	0.706747	0.0	denovo_WM_7:43:0.530
chr14	61424937	61425106	reg1011781.p1	4.305	+	TSC_hg19_v1_chr14_+_61201489 NM_001177963 NM_002431 BC000820 AK308701 U61835 X87843 X92669 AB463879 CU674412 CR450336	-223506	+	TSC_hg19_v1_chr14_-_61191035 AK309358	-233964	-	AF032107 TSC_hg19_v1_chr14_-_61190584 BC098135 BC098282 BC099722 BC101934 EU446619 EU446844 NM_017420	-234367	-	BC136606 BC136607 AK293158 BC108284 NM_020810	22725	-	NM_001172702 NM_153811 AF543422 TSC_hg19_v1_chr14_+_61447920	22856	+	TSC_hg19_v1_chr14_+_61447932 BC050349	22915	+	NM_001177963|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##NM_002431|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##BC000820|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##AK308701|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##U61835|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##X87843|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##X92669|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##CR450336|MNAT1|4331|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)##AK309358|SIX4|51804|SIX homeobox 4##AF032107|SIX4|51804|SIX homeobox 4##BC098135|SIX4|51804|SIX homeobox 4##BC098282|SIX4|51804|SIX homeobox 4##BC099722|SIX4|51804|SIX homeobox 4##BC101934|SIX4|51804|SIX homeobox 4##EU446619|SIX4|51804|SIX homeobox 4##EU446844|SIX4|51804|SIX homeobox 4##NM_017420|SIX4|51804|SIX homeobox 4##BC136606|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##BC136607|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##AK293158|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##BC108284|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##NM_020810|TRMT5|57570|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)##NM_001172702|SLC38A6|145389|solute carrier family 38, member 6##NM_153811|SLC38A6|145389|solute carrier family 38, member 6##AF543422|SLC38A6|145389|solute carrier family 38, member 6##BC050349|SLC38A6|145389|solute carrier family 38, member 6	0.987835	0.0	denovo_WM_7:16:0.946
chr16	57048597	57048719	reg1007383.p1	4.305	+	TSC_hg19_v1_chr16_+_57023474 AK097030	-25198	+	M30185 AK297699 NM_000078 TSC_hg19_v1_chr16_+_56995861 AK291586 BC025739 EU176529 CU693046 BT020064 M83573	-52821	+	AK302167 TSC_hg19_v1_chr16_+_56966053 AB034989 AK223233 AK291565 AK292088 AK304800 BC009739 DQ837586 AF055001 D14695 BC000086 BC008320 BC032673 DQ891867 EU176642 CR457116 AF055003	-82517	+	AK074182 NM_032206	2327	+	AF389420 EF452236 TSC_hg19_v1_chr16_+_57054697	6002	+	TSC_hg19_v1_chr16_+_57126462 NM_152727	77807	+	AK097030|NLRC5|84166|NLR family, CARD domain containing 5##M30185|CETP|1071|cholesteryl ester transfer protein, plasma##AK297699|CETP|1071|cholesteryl ester transfer protein, plasma##NM_000078|CETP|1071|cholesteryl ester transfer protein, plasma##AK291586|CETP|1071|cholesteryl ester transfer protein, plasma##BC025739|CETP|1071|cholesteryl ester transfer protein, plasma##EU176529|CETP|1071|cholesteryl ester transfer protein, plasma##BT020064|CETP|1071|cholesteryl ester transfer protein, plasma##M83573|CETP|1071|cholesteryl ester transfer protein, plasma##AK302167|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AB034989|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK223233|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK291565|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK292088|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK304800|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC009739|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ837586|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055001|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##D14695|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC000086|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC008320|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##BC032673|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##DQ891867|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##EU176642|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##CR457116|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AF055003|HERPUD1|9709|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1##AK074182|NLRC5|84166|NLR family, CARD domain containing 5##NM_032206|NLRC5|84166|NLR family, CARD domain containing 5##AF389420|NLRC5|84166|NLR family, CARD domain containing 5##EF452236|NLRC5|84166|NLR family, CARD domain containing 5##NM_152727|CPNE2|221184|copine II	0.0	0.0	
chr17	45173239	45173374	reg1011583.p2	4.305	+	BC108690 BC033942 NM_203400	-116706	-	TSC_hg19_v1_chr17_+_45000525 AK303650 AK290890 BC009710 AF229796 BC034762 CU679451 AF007548 DQ891461 DQ894638	-172761	+	TSC_hg19_v1_chr17_+_45000492 NM_001012511 NM_004287 NM_054022	-172819	+	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	93272	-	TSC_hg19_v1_chr17_-_45266641 AK299342	93333	-	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	93378	-	BC108690|RPRML|388394|reprimo-like##BC033942|RPRML|388394|reprimo-like##NM_203400|RPRML|388394|reprimo-like##AK290890|GOSR2|9570|golgi SNAP receptor complex member 2##BC009710|GOSR2|9570|golgi SNAP receptor complex member 2##AF229796|GOSR2|9570|golgi SNAP receptor complex member 2##BC034762|GOSR2|9570|golgi SNAP receptor complex member 2##AF007548|GOSR2|9570|golgi SNAP receptor complex member 2##DQ891461|GOSR2|9570|golgi SNAP receptor complex member 2##DQ894638|GOSR2|9570|golgi SNAP receptor complex member 2##NM_001012511|GOSR2|9570|golgi SNAP receptor complex member 2##NM_004287|GOSR2|9570|golgi SNAP receptor complex member 2##NM_054022|GOSR2|9570|golgi SNAP receptor complex member 2##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)	0.996039	0.0	
chr19	6087945	6088113	reg1004151.p1	4.305	+	AK299856 TSC_hg19_v1_chr19_-_5978306 NM_003624 NM_007320 NM_007322	-109745	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	-109878	-	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	-109917	-	TSC_hg19_v1_chr19_-_6110512 AK291196 BC071571 X76091	22494	-	TSC_hg19_v1_chr19_-_6110613 BC028579 AK303321 NM_000635 NM_134433	22583	-	AY009107 BC022027 AK093433 AX748123 AK302604 AJ577571 NM_030924 BC090046 AL136854	47724	+	AK299856|RANBP3|8498|RAN binding protein 3##NM_003624|RANBP3|8498|RAN binding protein 3##NM_007320|RANBP3|8498|RAN binding protein 3##NM_007322|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK291196|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC071571|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##X76091|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##BC028579|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AK303321|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_000635|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##NM_134433|RFX2|5990|regulatory factor X, 2 (influences HLA class II expression)##AY009107|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC022027|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK093433|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AK302604|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AJ577571|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##NM_030924|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##BC090046|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2##AL136854|ACSBG2|81616|acyl-CoA synthetase bubblegum family member 2	0.0	0.0	
chr6	106320274	106320395	reg1011347.p1	4.305	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-469339	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-469376	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-469488	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	213862	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	213901	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	226470	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	1.237681	0.0	denovo_WM_7:-9:0.215	denovo_WM_7:-21:0.266	denovo_WM_7:-24:0.388
chr17	37309255	37309379	reg1007515.p2	4.304	+	TSC_hg19_v1_chr17_-_37307891 NM_020405	-1422	-	TSC_hg19_v1_chr17_-_37307863 BC036059	-1470	-	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	-1585	-	TSC_hg19_v1_chr17_+_37321318 AK093715	12004	+	NM_001143968	13096	-	TSC_hg19_v1_chr17_-_37350083 AB209176	40776	-	NM_020405|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##AK093715|LOC284108|284108|uncharacterized LOC284108##NM_001143968|ARL5C|390790|ADP-ribosylation factor-like 5C##AB209176|CACNB1|782|calcium channel, voltage-dependent, beta 1 subunit	0.0	0.981164	CTCF.p2:-16:0.981
chr20	46116148	46116280	reg1008497.p2	4.304	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-130726	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-139567	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-188645	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	14408	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	14470	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	298538	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.019803	0.0	
chr3	196167330	196167450	reg1010001.p2	4.304	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-8057	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-8091	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-8107	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	63188	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	74823	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	128000	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.86437	0.0	
chr4	68415023	68415169	reg1014888.p1	4.304	+	TSC_hg19_v1_chr4_-_68411282 NM_001812	-3818	-	TSC_hg19_v1_chr4_-_68411224 BC030695 BX648166 BC041117 AK307928 AK308170 M95724	-3888	-	CU688992 TSC_hg19_v1_chr4_-_68411171	-3973	-	TSC_hg19_v1_chr4_+_68424444 AB023483 NM_012108 AK313676 BC014958 AB528919 CU677135	9389	+	TSC_hg19_v1_chr4_-_68566842 AB014773 AB463334 AM392673 EF623993	151722	-	TSC_hg19_v1_chr4_-_68566867 AL832015 AL832458 AK094969 AK314371 BC031637 BC126484 BC126486 NM_018227	151775	-	NM_001812|CENPC1|1060|centromere protein C 1##BC030695|CENPC1|1060|centromere protein C 1##BX648166|CENPC1|1060|centromere protein C 1##BC041117|CENPC1|1060|centromere protein C 1##AK307928|CENPC1|1060|centromere protein C 1##AK308170|CENPC1|1060|centromere protein C 1##M95724|CENPC1|1060|centromere protein C 1##AB023483|STAP1|26228|signal transducing adaptor family member 1##NM_012108|STAP1|26228|signal transducing adaptor family member 1##AK313676|STAP1|26228|signal transducing adaptor family member 1##BC014958|STAP1|26228|signal transducing adaptor family member 1##AB014773|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AM392673|UBA6|55236|ubiquitin-like modifier activating enzyme 6##EF623993|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832015|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AL832458|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK094969|UBA6|55236|ubiquitin-like modifier activating enzyme 6##AK314371|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC031637|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126484|UBA6|55236|ubiquitin-like modifier activating enzyme 6##BC126486|UBA6|55236|ubiquitin-like modifier activating enzyme 6##NM_018227|UBA6|55236|ubiquitin-like modifier activating enzyme 6	0.0	0.0	
chr8	101567802	101567982	reg1009962.p1	4.304	+	TSC_hg19_v1_chr8_-_101322306 NM_183419	-245607	-	BC062676 BC105300 TSC_hg19_v1_chr8_-_101322180	-245711	-	AB271913 AB271914 AB029316 NM_015435	-252421	-	BC009500 BC035087 TSC_hg19_v1_chr8_-_101571985 BC050396 AL832842 AK095235 BC060843 AB077205 NM_198401	4048	-	AK093906 AX748361 NM_152628	94000	-	Z48501 AB385157 CU677537 DQ893508 DQ896500 TSC_hg19_v1_chr8_-_101733874	165914	-	NM_183419|RNF19A|25897|ring finger protein 19A##BC062676|RNF19A|25897|ring finger protein 19A##BC105300|RNF19A|25897|ring finger protein 19A##AB271913|RNF19A|25897|ring finger protein 19A##AB029316|RNF19A|25897|ring finger protein 19A##NM_015435|RNF19A|25897|ring finger protein 19A##BC009500|GAPDHP62|100128961|glyceraldehyde 3 phosphate dehydrogenase pseudogene 62##BC035087|ANKRD46|157567|ankyrin repeat domain 46##BC050396|ANKRD46|157567|ankyrin repeat domain 46##AL832842|ANKRD46|157567|ankyrin repeat domain 46##AK095235|ANKRD46|157567|ankyrin repeat domain 46##BC060843|ANKRD46|157567|ankyrin repeat domain 46##AB077205|ANKRD46|157567|ankyrin repeat domain 46##NM_198401|ANKRD46|157567|ankyrin repeat domain 46##AK093906|SNX31|169166|sorting nexin 31##NM_152628|SNX31|169166|sorting nexin 31##Z48501|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ893508|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ896500|PABPC1|26986|poly(A) binding protein, cytoplasmic 1	2.013167	0.0	
chr12	122101677	122101857	reg1010806.p2	4.303	+	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	-37124	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-82853	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-83508	-	BC057760 NM_173855	5792	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	48977	+	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	129807	-	BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)	1.018678	0.0	denovo_WM_7:-92:0.582
chr14	24743470	24743592	reg1010075.p1	4.303	+	TSC_hg19_v1_chr14_-_24740802 NM_182836	-2734	-	TSC_hg19_v1_chr14_-_24740785 AK291347	-2748	-	TSC_hg19_v1_chr14_-_24740748 NM_004581 BC003093	-2773	-	AK058159 NM_138452	25134	-	BC015943 AL833917 BC014057 TSC_hg19_v1_chr14_-_24768965 BX247980 AF418205 NM_001136050	25408	-	TSC_hg19_v1_chr14_+_24769078 AB095941 BC025332 BX647311 BX248018 NM_174913	25556	+	NM_182836|RABGGTA|5875|Rab geranylgeranyltransferase, alpha subunit##AK291347|RABGGTA|5875|Rab geranylgeranyltransferase, alpha subunit##NM_004581|RABGGTA|5875|Rab geranylgeranyltransferase, alpha subunit##BC003093|RABGGTA|5875|Rab geranylgeranyltransferase, alpha subunit##AK058159|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##NM_138452|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##BC015943|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##AL833917|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##BC014057|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##BX247980|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##AF418205|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##NM_001136050|DHRS1|115817|dehydrogenase/reductase (SDR family) member 1##AB095941|C14orf21|161424|chromosome 14 open reading frame 21##BC025332|C14orf21|161424|chromosome 14 open reading frame 21##BX647311|C14orf21|161424|chromosome 14 open reading frame 21##BX248018|C14orf21|161424|chromosome 14 open reading frame 21##NM_174913|C14orf21|161424|chromosome 14 open reading frame 21	0.0	0.0	
chr15	44124543	44124659	reg1009227.p1	4.303	+	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	-5414	+	AB463886 CU690792 DQ893389 DQ896709 TSC_hg19_v1_chr15_-_44116882 U04209 BC023557 BC050742 AK312867 NM_005926	-7743	-	TSC_hg19_v1_chr15_+_44092806 AK022435 AF161485 AF049613	-31799	+	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	362749	-	AK090572 AX746516 TSC_hg19_v1_chr15_-_44487470	362868	-	TSC_hg19_v1_chr15_+_44580919 NM_138423 NM_177974 BC012124	456298	+	NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##DQ893389|MFAP1|4236|microfibrillar-associated protein 1##DQ896709|MFAP1|4236|microfibrillar-associated protein 1##U04209|MFAP1|4236|microfibrillar-associated protein 1##BC023557|MFAP1|4236|microfibrillar-associated protein 1##BC050742|MFAP1|4236|microfibrillar-associated protein 1##AK312867|MFAP1|4236|microfibrillar-associated protein 1##NM_005926|MFAP1|4236|microfibrillar-associated protein 1##AK022435|C15orf63|25764|chromosome 15 open reading frame 63##AF161485|C15orf63|25764|chromosome 15 open reading frame 63##AF049613|C15orf63|25764|chromosome 15 open reading frame 63##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5##AK090572|FRMD5|84978|FERM domain containing 5##NM_138423|CASC4|113201|cancer susceptibility candidate 4##NM_177974|CASC4|113201|cancer susceptibility candidate 4##BC012124|CASC4|113201|cancer susceptibility candidate 4	1.960936	0.0	denovo_WM_7:31:0.384	denovo_WM_7:32:0.295	denovo_WM_7:50:0.531	denovo_WM_7:53:0.309
chr17	6656693	6656873	reg1006381.p2	4.303	+	AJ489980 AY151833 AK172785 AK297612 TSC_hg19_v1_chr17_-_6616686 AK127797 BC104795 BC112151 BC143689 NM_001143838 NM_177550	-40088	-	BC038956 TSC_hg19_v1_chr17_+_6555051 BC052606 BC067087 BC082254 NM_001105520 BC028174	-101720	+	TSC_hg19_v1_chr17_-_6554926 AB527483 AK094033 AX748423 AK311875 BC012539 AF151883 AK130946 NM_016060	-101886	-	NM_017523 NM_199139	2372	+	BC073156 TSC_hg19_v1_chr17_+_6659364 AK292710 AK292848 BC032776 BC058017 EF028165 EF028166 X99699	2595	+	NM_153230 BC034782	22778	+	AJ489980|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AY151833|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK172785|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK297612|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK127797|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC104795|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC112151|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC143689|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_001143838|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_177550|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC038956|C17orf100|388327|chromosome 17 open reading frame 100##BC052606|C17orf100|388327|chromosome 17 open reading frame 100##BC067087|C17orf100|388327|chromosome 17 open reading frame 100##BC082254|C17orf100|388327|chromosome 17 open reading frame 100##NM_001105520|C17orf100|388327|chromosome 17 open reading frame 100##BC028174|C17orf100|388327|chromosome 17 open reading frame 100##AK094033|MED31|51003|mediator complex subunit 31##AK311875|MED31|51003|mediator complex subunit 31##BC012539|MED31|51003|mediator complex subunit 31##AF151883|MED31|51003|mediator complex subunit 31##AK130946|MED31|51003|mediator complex subunit 31##NM_016060|MED31|51003|mediator complex subunit 31##NM_017523|XAF1|54739|XIAP associated factor 1##NM_199139|XAF1|54739|XIAP associated factor 1##BC073156|XAF1|54739|XIAP associated factor 1##AK292710|XAF1|54739|XIAP associated factor 1##AK292848|XAF1|54739|XIAP associated factor 1##BC032776|XAF1|54739|XIAP associated factor 1##BC058017|XAF1|54739|XIAP associated factor 1##EF028165|XAF1|54739|XIAP associated factor 1##EF028166|XAF1|54739|XIAP associated factor 1##X99699|XAF1|54739|XIAP associated factor 1##NM_153230|FBXO39|162517|F-box protein 39##BC034782|FBXO39|162517|F-box protein 39	0.0	0.0	
chr4	90993130	90993261	reg1012897.p1	4.303	+	AK125557 AK313566 BC063848 NM_007351 U27109 AB385146 HQ258009	-177133	+	NM_001146055	-233749	-	NM_001146054 NM_007308 L08850 AK290169 BC013293 HQ830268 BC108275 TSC_hg19_v1_chr4_-_90758313 HQ830269 NM_000345 HQ830267	-234953	-	AK097436 NM_001145065 AK310825 AB051467 BC021681	55523	+	BC051694 NM_207491	162986	+	AB209318 NM_001510 AK308611	2232397	+	AK125557|MMRN1|22915|multimerin 1##AK313566|MMRN1|22915|multimerin 1##BC063848|MMRN1|22915|multimerin 1##NM_007351|MMRN1|22915|multimerin 1##U27109|MMRN1|22915|multimerin 1##HQ258009|MMRN1|22915|multimerin 1##NM_001146055|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##NM_001146054|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##NM_007308|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##L08850|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##AK290169|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##BC013293|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##HQ830268|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##BC108275|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##HQ830269|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##NM_000345|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##HQ830267|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##AK097436|FAM190A|401145|family with sequence similarity 190, member A##NM_001145065|FAM190A|401145|family with sequence similarity 190, member A##AK310825|FAM190A|401145|family with sequence similarity 190, member A##AB051467|FAM190A|401145|family with sequence similarity 190, member A##BC021681|FAM190A|401145|family with sequence similarity 190, member A##BC051694|FAM190A|401145|family with sequence similarity 190, member A##NM_207491|FAM190A|401145|family with sequence similarity 190, member A##AB209318|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001510|GRID2|2895|glutamate receptor, ionotropic, delta 2##AK308611|GRID2|2895|glutamate receptor, ionotropic, delta 2	0.997618	0.0	denovo_WM_7:33:0.493	denovo_WM_7:34:0.493
chr5	142429894	142430028	reg1014235.p2	4.303	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-279653	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-279989	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-352390	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	352862	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	353145	-	BC015610 TSC_hg19_v1_chr5_-_142783214	353250	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	1.01977	0.0	denovo_WM_7:-40:0.431	denovo_WM_7:-41:0.502
chr5	164636282	164636387	reg1011119.p2	4.303	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-1703691	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-1706046	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-1748739	+	HE578282 HE578283 NM_001122679	2075508	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	3082487	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	3277140	+	AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	0.017089	0.595563	CTCF.p2:-12:0.596
chr7	122158673	122158809	reg1013492.p1	4.303	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-214152	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-374452	-	TSC_hg19_v1_chr7_+_121513214 U88967	-645520	+	BC022038 AF447589 NM_139175 AK098524	180456	-	AK058116 AK098654 BC029264 NM_198085	184251	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	367757	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	0.0	0.0	
chr9	140303028	140303148	reg1010541.p2	4.303	+	BC053618 NM_001004354 TSC_hg19_v1_chr9_-_140196724	-106368	-	TSC_hg19_v1_chr9_+_140172277 AK000252 NM_017723	-130803	+	TSC_hg19_v1_chr9_+_140149888 AF464935 AB384577 AM393289	-153165	+	BC065002 TSC_hg19_v1_chr9_-_140317615 BC110879 AK000440 AK094438 BC039252 BC037355	14522	-	TSC_hg19_v1_chr9_-_140317652 BC033079 BC069205	14588	-	NM_017820 TSC_hg19_v1_chr9_-_140317724	14630	-	BC053618|NRARP|441478|NOTCH-regulated ankyrin repeat protein##NM_001004354|NRARP|441478|NOTCH-regulated ankyrin repeat protein##AK000252|C9orf167|54863|chromosome 9 open reading frame 167##NM_017723|C9orf167|54863|chromosome 9 open reading frame 167##AF464935|COBRA1|25920|cofactor of BRCA1##AM393289|COBRA1|25920|cofactor of BRCA1##BC065002|EXD3|54932|exonuclease 3'-5' domain containing 3##BC110879|EXD3|54932|exonuclease 3'-5' domain containing 3##AK000440|EXD3|54932|exonuclease 3'-5' domain containing 3##AK094438|EXD3|54932|exonuclease 3'-5' domain containing 3##BC039252|EXD3|54932|exonuclease 3'-5' domain containing 3##BC037355|EXD3|54932|exonuclease 3'-5' domain containing 3##BC033079|EXD3|54932|exonuclease 3'-5' domain containing 3##BC069205|EXD3|54932|exonuclease 3'-5' domain containing 3##NM_017820|EXD3|54932|exonuclease 3'-5' domain containing 3	0.992509	0.0	
chr19	49999365	49999513	reg1002587.p1	4.302	+	AK056837 AK291120 AK297859 BC070223 BC105605 D28409 NM_012423 TSC_hg19_v1_chr19_+_49990864 X56932 BC032107 BC065236 BC071929 BC000514 BC001675 BC001836 AK222747 BC062537 AB529025 CU687556 EU831455 EU831542 BC013230	-8556	+	TSC_hg19_v1_chr19_+_49990861 AK130605	-8583	+	NM_001204503 U03858 AK301136 TSC_hg19_v1_chr19_+_49977846 HQ258599	-21583	+	NM_001015 TSC_hg19_v1_chr19_+_49999653	208	+	TSC_hg19_v1_chr19_+_49999686 AK311809 D28407	245	+	TSC_hg19_v1_chr19_+_49999690 X06617 BC016378 BC070224 DQ893225 DQ896555	270	+	AK056837|RPL13A|23521|ribosomal protein L13a##AK291120|RPL13A|23521|ribosomal protein L13a##AK297859|RPL13A|23521|ribosomal protein L13a##BC070223|RPL13A|23521|ribosomal protein L13a##BC105605|RPL13A|23521|ribosomal protein L13a##NM_012423|RPL13A|23521|ribosomal protein L13a##X56932|RPL13A|23521|ribosomal protein L13a##BC032107|RPL13A|23521|ribosomal protein L13a##BC065236|RPL13A|23521|ribosomal protein L13a##BC071929|RPL13A|23521|ribosomal protein L13a##BC000514|RPL13A|23521|ribosomal protein L13a##BC001675|RPL13A|23521|ribosomal protein L13a##BC001836|RPL13A|23521|ribosomal protein L13a##AK222747|RPL13A|23521|ribosomal protein L13a##BC062537|RPL13A|23521|ribosomal protein L13a##EU831455|RPL13A|23521|ribosomal protein L13a##EU831542|RPL13A|23521|ribosomal protein L13a##BC013230|RPL13A|23521|ribosomal protein L13a##AK130605|RPL13A|23521|ribosomal protein L13a##NM_001204503|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##U03858|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##AK301136|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##HQ258599|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##NM_001015|RPS11|6205|ribosomal protein S11##AK311809|RPS11|6205|ribosomal protein S11##X06617|RPS11|6205|ribosomal protein S11##BC016378|RPS11|6205|ribosomal protein S11##BC070224|RPS11|6205|ribosomal protein S11##DQ893225|RPS11|6205|ribosomal protein S11##DQ896555|RPS11|6205|ribosomal protein S11	0.0	0.0	
chr3	101556244	101556379	reg1011420.p1	4.302	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-9351	+	AK289689 NM_001134456	-58026	+	TSC_hg19_v1_chr3_+_101498080 BC009431	-58223	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	12063	+	AY090780 NM_175056 BC143817	597556	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3529269	+	NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##BC009431|FAM55C|91775|family with sequence similarity 55, member C##AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule	2.136122	0.0	denovo_WM_7:32:0.435	denovo_WM_7:33:0.247	denovo_WM_7:34:0.247	denovo_WM_7:57:0.224	denovo_WM_7:61:0.204	denovo_WM_7:62:0.292
chr5	122777848	122777977	reg1011686.p1	4.302	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-18768	-	NM_001136239 AK297992 AF272898 AF272899	-353068	+	TSC_hg19_v1_chr5_-_122372418 AK304053 NM_000943	-405488	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	69970	+	BC131507 AB033107 BC151226 NM_020747	1302876	-	NM_001146319 AK316288 AK300154	2917902	+	BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##AK304053|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_000943|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr7	115864635	115864755	reg1011898.p1	4.302	+	AK310995 NM_152829 AK291802 AF245357	-1676	+	NM_015641 AK299104 TSC_hg19_v1_chr7_+_115850592 BC001451 AK021575 AK300546 AK309324 AK222840 AF245356 AJ250865 AK315644 AB529039 EU176352 EU176694	-14042	+	TSC_hg19_v1_chr7_-_115670864 CR933605 NM_001018058 NM_012252	-193843	-	TSC_hg19_v1_chr7_+_116139705 AY353255 BC005256 NM_001206747 NM_001233 NM_198212 AK310786 AK311964 AF035752 AB451285 AB451417 AB489180 AM393815 BT007051 CR407685	275032	+	NM_001206748	275402	+	NM_001753 AK290871	300145	+	AK310995|TES|26136|testis derived transcript (3 LIM domains)##NM_152829|TES|26136|testis derived transcript (3 LIM domains)##AK291802|TES|26136|testis derived transcript (3 LIM domains)##AF245357|TES|26136|testis derived transcript (3 LIM domains)##NM_015641|TES|26136|testis derived transcript (3 LIM domains)##AK299104|TES|26136|testis derived transcript (3 LIM domains)##BC001451|TES|26136|testis derived transcript (3 LIM domains)##AK021575|TES|26136|testis derived transcript (3 LIM domains)##AK300546|TES|26136|testis derived transcript (3 LIM domains)##AK309324|TES|26136|testis derived transcript (3 LIM domains)##AK222840|TES|26136|testis derived transcript (3 LIM domains)##AF245356|TES|26136|testis derived transcript (3 LIM domains)##AJ250865|TES|26136|testis derived transcript (3 LIM domains)##AK315644|TES|26136|testis derived transcript (3 LIM domains)##EU176352|TES|26136|testis derived transcript (3 LIM domains)##EU176694|TES|26136|testis derived transcript (3 LIM domains)##CR933605|TFEC|22797|transcription factor EC##NM_001018058|TFEC|22797|transcription factor EC##NM_012252|TFEC|22797|transcription factor EC##AY353255|CAV2|858|caveolin 2##BC005256|CAV2|858|caveolin 2##NM_001206747|CAV2|858|caveolin 2##NM_001233|CAV2|858|caveolin 2##NM_198212|CAV2|858|caveolin 2##AK310786|CAV2|858|caveolin 2##AK311964|CAV2|858|caveolin 2##AF035752|CAV2|858|caveolin 2##AB451285|CAV2|858|caveolin 2##AB451417|CAV2|858|caveolin 2##AM393815|CAV2|858|caveolin 2##BT007051|CAV2|858|caveolin 2##CR407685|CAV2|858|caveolin 2##NM_001206748|CAV2|858|caveolin 2##NM_001753|CAV1|857|caveolin 1, caveolae protein, 22kDa##AK290871|CAV1|857|caveolin 1, caveolae protein, 22kDa	0.980936	0.0	denovo_WM_7:-85:0.968
chrX	22210958	22211103	reg1014830.p1	4.302	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	-160005	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-252204	+	AK091850 NM_206923	-336926	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	80038	+	AY039237 NM_182699 BC067878 BC051703	807054	+	AK298796 NM_173495 AK054858 BC121061	1142030	+	NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AK091850|YY2|404281|YY2 transcription factor##NM_206923|YY2|404281|YY2 transcription factor##GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##AK298796|PTCHD1|139411|patched domain containing 1##NM_173495|PTCHD1|139411|patched domain containing 1##AK054858|PTCHD1|139411|patched domain containing 1##BC121061|PTCHD1|139411|patched domain containing 1	0.0	0.081087	
chr15	70174593	70174685	reg1010368.p2	4.301	+	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	-429418	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-467277	-	TSC_hg19_v1_chr15_+_69706687 AK310402 EU176620	-467893	+	BC015421 TSC_hg19_v1_chr15_-_70341948	167270	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	215588	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	215604	-	NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##AK056793|LOC145694|145694|uncharacterized LOC145694##AK310402|KIF23|9493|kinesin family member 23##EU176620|KIF23|9493|kinesin family member 23##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	0.996465	0.0	denovo_WM_7:0:0.255	denovo_WM_7:3:0.382
chr19	6641985	6642088	reg1009447.p1	4.301	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-50878	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-50930	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-51004	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	28088	-	AF064090 NM_003807 NM_172014	28562	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	78620	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.980498	0.0	denovo_WM_7:47:0.693
chr9	37289096	37289195	reg1011047.p2	4.301	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-168562	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-168637	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-168659	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	133561	+	BC010007 TSC_hg19_v1_chr9_-_37465267	176115	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	176250	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.998776	0.0	denovo_WM_7:9:0.782
chr10	103767104	103767282	reg1003771.p2	4.300	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-163586	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-167581	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-188975	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	48719	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	57949	+	AK300588 TSC_hg19_v1_chr10_-_103874641	107426	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.995936	0.0	denovo_WM_7:-89:0.315	denovo_WM_7:-90:0.315	denovo_WM_7:-91:0.315
chr1	36779128	36779305	reg1002980.p1	4.300	+	TSC_hg19_v1_chr1_+_36772696 NM_024676 AK297015 AK056459	-6510	+	TSC_hg19_v1_chr1_+_36771968 NM_001162530	-7239	+	EU446755 TSC_hg19_v1_chr1_+_36748231	-31016	+	AK001509 NM_018166	10538	-	TSC_hg19_v1_chr1_-_36817157 AK023810	37958	-	AL834137 NM_032017 BC008344 TSC_hg19_v1_chr1_-_36851499 BC007835 AY198395	72275	-	NM_024676|SH3D21|79729|SH3 domain containing 21##AK297015|SH3D21|79729|SH3 domain containing 21##AK056459|SH3D21|79729|SH3 domain containing 21##NM_001162530|SH3D21|79729|SH3 domain containing 21##EU446755|THRAP3|9967|thyroid hormone receptor associated protein 3##AK001509|FAM176B|55194|family with sequence similarity 176, member B##NM_018166|FAM176B|55194|family with sequence similarity 176, member B##AL834137|STK40|83931|serine/threonine kinase 40##NM_032017|STK40|83931|serine/threonine kinase 40##BC008344|STK40|83931|serine/threonine kinase 40##BC007835|STK40|83931|serine/threonine kinase 40##AY198395|STK40|83931|serine/threonine kinase 40	0.0	0.0	
chr14	73491630	73491807	reg1006106.p1	4.300	+	AK098542 AF311602 NM_178441	-38061	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	-98583	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	-130910	-	AB046809 TSC_hg19_v1_chr14_-_73493815 AJ310569 AK027399 BC014902 BC053520 NM_021260	2113	-	TSC_hg19_v1_chr14_+_73525218 BC062440 NM_021239	33491	+	TSC_hg19_v1_chr14_+_73525252 AK026107 AL832314 BC033664 BC083496 BC111066	33530	+	AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AB046809|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AJ310569|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AK027399|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC014902|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC053520|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_021260|ZFYVE1|53349|zinc finger, FYVE domain containing 1##BC062440|RBM25|58517|RNA binding motif protein 25##NM_021239|RBM25|58517|RNA binding motif protein 25##AK026107|RBM25|58517|RNA binding motif protein 25##AL832314|RBM25|58517|RNA binding motif protein 25##BC033664|RBM25|58517|RNA binding motif protein 25##BC083496|RBM25|58517|RNA binding motif protein 25##BC111066|RBM25|58517|RNA binding motif protein 25	0.95125	0.0	denovo_WM_7:67:0.628
chr18	4045365	4045545	reg1014431.p1	4.300	+	AK294777 AK294717 NM_001242762 NM_001242763	-170728	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-171171	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-200125	-	AK304101 TSC_hg19_v1_chr18_-_4455255	409798	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	409815	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	1151797	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	1.996386	0.0	denovo_WM_7:2:0.274	denovo_WM_7:3:0.365	denovo_WM_7:-13:0.291	denovo_WM_7:-14:0.382
chr5	67599335	67599515	reg1003285.p2	4.300	+	AK094785 NM_001242466 AK294919	-10973	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	-12879	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	-15131	+	NM_001251969 NM_022902 NM_024055 BC017441 TSC_hg19_v1_chr5_+_68389821	790378	+	TSC_hg19_v1_chr5_+_68389892 AY358505 AF461760	790457	+	AK292925 TSC_hg19_v1_chr5_+_68389913	790488	+	AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001251969|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_022902|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_024055|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC017441|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AY358505|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AF461760|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK292925|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5	0.0	0.0	
chr6	43284707	43284788	reg1014487.p2	4.300	+	AB463553 AY555741 AY555742 AY555743 AY555744 NM_206922	-8218	-	TSC_hg19_v1_chr6_+_43266009 AK290806 AK309570 AK314822 BC033805 AK290796 BC017963 DQ893614 DQ896844 AF210455 AY050498	-18695	+	TSC_hg19_v1_chr6_+_43265994 NM_006672 NM_153320 AF097518	-18750	+	TSC_hg19_v1_chr6_-_43337215 BC098434 AF090114 NM_014345 BC030687	52495	-	TSC_hg19_v1_chr6_+_43395310 AK000002 NM_001198934	110566	+	AY032599 NM_033450	114741	+	AY555741|CRIP3|401262|cysteine-rich protein 3##AY555742|CRIP3|401262|cysteine-rich protein 3##AY555743|CRIP3|401262|cysteine-rich protein 3##AY555744|CRIP3|401262|cysteine-rich protein 3##NM_206922|CRIP3|401262|cysteine-rich protein 3##AK290806|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK309570|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK314822|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC033805|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK290796|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC017963|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ893614|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ896844|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF210455|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AY050498|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##NM_006672|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##NM_153320|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF097518|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC098434|ZNF318|24149|zinc finger protein 318##AF090114|ZNF318|24149|zinc finger protein 318##NM_014345|ZNF318|24149|zinc finger protein 318##BC030687|ZNF318|24149|zinc finger protein 318##AK000002|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_001198934|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##AY032599|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10##NM_033450|ABCC10|89845|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	0.993912	0.0	denovo_WM_7:35:0.981
chr8	146079130	146079204	reg1012160.p2	4.300	+	TSC_hg19_v1_chr8_-_146078881 NM_001081003	-266	-	TSC_hg19_v1_chr8_-_146078452 NM_001081004 NM_014066	-717	-	TSC_hg19_v1_chr8_-_146078434 AK001477 BC002672	-739	-	TSC_hg19_v1_chr8_-_146126839 AK294282 BX648173 AK095705 AB208810 BC017091 AK054888 NM_001109689 NM_021061 BC107579	47652	-	TSC_hg19_v1_chr8_-_146176267 BC010996 AK226016 AK096815 AK127625 DQ117529 NM_001029976 NM_006958	97080	-	AK128723 TSC_hg19_v1_chr8_-_146202735	123565	-	NM_001081003|COMMD5|28991|COMM domain containing 5##NM_001081004|COMMD5|28991|COMM domain containing 5##NM_014066|COMMD5|28991|COMM domain containing 5##AK001477|COMMD5|28991|COMM domain containing 5##BC002672|COMMD5|28991|COMM domain containing 5##AK294282|ZNF250|58500|zinc finger protein 250##BX648173|ZNF250|58500|zinc finger protein 250##AK095705|ZNF250|58500|zinc finger protein 250##AB208810|ZNF250|58500|zinc finger protein 250##BC017091|ZNF250|58500|zinc finger protein 250##AK054888|ZNF250|58500|zinc finger protein 250##NM_001109689|ZNF250|58500|zinc finger protein 250##NM_021061|ZNF250|58500|zinc finger protein 250##BC107579|ZNF250|58500|zinc finger protein 250##BC010996|ZNF16|7564|zinc finger protein 16##AK226016|ZNF16|7564|zinc finger protein 16##AK096815|ZNF16|7564|zinc finger protein 16##AK127625|ZNF16|7564|zinc finger protein 16##DQ117529|ZNF16|7564|zinc finger protein 16##NM_001029976|ZNF16|7564|zinc finger protein 16##NM_006958|ZNF16|7564|zinc finger protein 16##AK128723|ZNF252|286101|zinc finger protein 252	0.994074	0.0	denovo_WM_7:-35:0.459	denovo_WM_7:-36:0.459
chr11	117377227	117377312	reg1009646.p2	4.299	+	AK302991 BC000602 TSC_hg19_v1_chr11_+_117198865 AK303067	-178438	+	TSC_hg19_v1_chr11_+_117198594 BX648682 NM_014956 BC054015	-178685	+	TSC_hg19_v1_chr11_-_117186973 AF324837 AB032975 AF201468 AF190725 BC036084 AK075049 BC065492 NM_012104 NM_138971 NM_138972 NM_138973	-190289	-	AB385430 AF304304 AF304305 TSC_hg19_v1_chr11_-_117667909 AF334384 AB032958	290584	-	TSC_hg19_v1_chr11_-_117667943 AF491813 NM_020693	290690	-	DQ786191 U50743 AF241236 AK296195 TSC_hg19_v1_chr11_-_117695460 AK096069 BC013289 NM_001680	318165	-	AK302991|CEP164|22897|centrosomal protein 164kDa##BC000602|CEP164|22897|centrosomal protein 164kDa##AK303067|CEP164|22897|centrosomal protein 164kDa##BX648682|CEP164|22897|centrosomal protein 164kDa##NM_014956|CEP164|22897|centrosomal protein 164kDa##BC054015|CEP164|22897|centrosomal protein 164kDa##AF324837|BACE1|23621|beta-site APP-cleaving enzyme 1##AB032975|BACE1|23621|beta-site APP-cleaving enzyme 1##AF201468|BACE1|23621|beta-site APP-cleaving enzyme 1##AF190725|BACE1|23621|beta-site APP-cleaving enzyme 1##BC036084|BACE1|23621|beta-site APP-cleaving enzyme 1##AK075049|BACE1|23621|beta-site APP-cleaving enzyme 1##BC065492|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_012104|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138971|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138972|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138973|BACE1|23621|beta-site APP-cleaving enzyme 1##AF304304|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF304305|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF334384|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AB032958|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF491813|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##NM_020693|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##DQ786191|FXYD2|486|FXYD domain containing ion transport regulator 2##U50743|FXYD2|486|FXYD domain containing ion transport regulator 2##AF241236|FXYD2|486|FXYD domain containing ion transport regulator 2##AK096069|FXYD2|486|FXYD domain containing ion transport regulator 2##BC013289|FXYD2|486|FXYD domain containing ion transport regulator 2##NM_001680|FXYD2|486|FXYD domain containing ion transport regulator 2	1.237237	0.0	denovo_WM_7:0:0.255	denovo_WM_7:15:0.246
chr12	118780609	118780705	reg1003697.p1	4.299	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-206679	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-206734	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-206782	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	29971	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	30073	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	33745	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.996124	0.0	
chr16	16676826	16676994	reg1011768.p2	4.299	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-350380	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-350422	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-350428	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	887895	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1896481	-	TSC_hg19_v1_chr16_-_18798077 AK127316	2121186	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.025454	0.0	
chr2	127693620	127693724	reg1010726.p2	4.299	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	-279880	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	-279965	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-2910808	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	171069	-	BC039307 NM_001001665	269670	-	AK131190 TSC_hg19_v1_chr2_-_127977781	284045	-	BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1##BC039307|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##NM_001001665|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##AK131190|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1	0.392532	0.0	denovo_WM_7:23:0.362
chr3	178235063	178235215	reg1012772.p2	4.299	+	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	-1320080	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	-1320188	-	TSC_hg19_v1_chr3_-_176914267 BX648935	-1320889	-	BC017825 NM_181361	19084	+	AF209747 NM_005832	41413	+	TSC_hg19_v1_chr3_-_178789594 AK122768 AF355465 AK022358 BC002896	554426	-	AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC017825|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_181361|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AF209747|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##NM_005832|KCNMB2|10242|potassium large conductance calcium-activated channel, subfamily M, beta member 2##AK122768|ZMAT3|64393|zinc finger, matrin-type 3##AF355465|ZMAT3|64393|zinc finger, matrin-type 3##AK022358|ZMAT3|64393|zinc finger, matrin-type 3##BC002896|ZMAT3|64393|zinc finger, matrin-type 3	0.0	0.0	
chr6	109425251	109425361	reg1013984.p1	4.299	+	TSC_hg19_v1_chr6_+_109416697 AK092723 AX747690 AK289910	-8589	+	NM_001083535 BC064365	-8949	+	AK290157 TSC_hg19_v1_chr6_-_109415662 NM_014454	-9696	-	BC033448 NM_173830	25200	+	AK310854 TSC_hg19_v1_chr6_-_109702904	277598	-	TSC_hg19_v1_chr6_-_109703588 AF106518 AF263279 AF299341 DQ891034 DQ894213	278269	-	AK092723|CEP57L1|285753|centrosomal protein 57kDa-like 1##AK289910|CEP57L1|285753|centrosomal protein 57kDa-like 1##NM_001083535|CEP57L1|285753|centrosomal protein 57kDa-like 1##BC064365|CEP57L1|285753|centrosomal protein 57kDa-like 1##AK290157|SESN1|27244|sestrin 1##NM_014454|SESN1|27244|sestrin 1##BC033448|CEP57L1|285753|centrosomal protein 57kDa-like 1##NM_173830|CEP57L1|285753|centrosomal protein 57kDa-like 1##AK310854|CD164|8763|CD164 molecule, sialomucin##AF106518|CD164|8763|CD164 molecule, sialomucin##AF263279|CD164|8763|CD164 molecule, sialomucin##AF299341|CD164|8763|CD164 molecule, sialomucin##DQ891034|CD164|8763|CD164 molecule, sialomucin##DQ894213|CD164|8763|CD164 molecule, sialomucin	0.998908	0.0	denovo_WM_7:-56:0.244	denovo_WM_7:-57:0.379	denovo_WM_7:-60:0.240
chr10	26657316	26657422	reg1000961.p1	4.298	+	M74826 BC029517 M81882 TSC_hg19_v1_chr10_+_26505702 BC126327 BC126329 AB527954 HQ258311	-151704	+	NM_000818 NM_001134366	-152134	+	AK310494 TSC_hg19_v1_chr10_+_26223169 AF229172 AY101367 BC036079 BC045538	-434189	+	TSC_hg19_v1_chr10_+_26727269 NM_019043	69902	+	TSC_hg19_v1_chr10_+_26727306 AK308916 AK000812 BC035636	69948	+	TSC_hg19_v1_chr10_+_26727679 BC054516	70299	+	M74826|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC029517|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##M81882|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126327|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##BC126329|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##HQ258311|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_000818|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##NM_001134366|GAD2|2572|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)##AK310494|MYO3A|53904|myosin IIIA##AF229172|MYO3A|53904|myosin IIIA##AY101367|MYO3A|53904|myosin IIIA##BC036079|MYO3A|53904|myosin IIIA##BC045538|MYO3A|53904|myosin IIIA##NM_019043|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK308916|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##AK000812|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC035636|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein##BC054516|APBB1IP|54518|amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	0.0	0.0	
chr16	17162420	17162543	reg1010796.p2	4.298	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-835951	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-835993	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-835999	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	402324	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1410910	-	TSC_hg19_v1_chr16_-_18798077 AK127316	1635615	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	1.249082	0.0	denovo_WM_7:-74:0.216	denovo_WM_7:-75:0.250
chr18	43647539	43647605	reg1013749.p1	4.298	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	-100294	-	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-241948	+	NM_001146037	-340655	+	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	4636	-	TSC_hg19_v1_chr18_-_43668143 AK129804	20605	-	TSC_hg19_v1_chr18_-_43669608 BC003119	22027	-	AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC003119|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.0	0.0	
chr1	9471206	9471313	reg1010365.p1	4.298	+	TSC_hg19_v1_chr1_+_9415945 CU677397	-55313	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	-118290	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	-118322	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	128273	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	128377	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	177697	+	AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201	0.0	0.0	
chr20	52482866	52482960	reg1008614.p2	4.298	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-272114	-	AF041259 NM_006526	-283278	-	AK302570 NM_001193421	-681092	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	204149	-	AK315220 NM_003657	204390	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	307607	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.995025	0.0	
chr2	86058968	86059128	reg1016001.p1	4.298	+	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-78043	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-137568	+	NM_000542 NM_198843	-163185	-	AY152815 NM_001042437	35744	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	57038	-	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	273935	-	NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa	0.677392	0.0	denovo_WM_7:21:0.643
chr5	145586024	145586204	reg1005827.p2	4.298	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	-2948	+	AK128738 TSC_hg19_v1_chr5_+_145583122	-2997	+	TSC_hg19_v1_chr5_-_145562236 NM_020117	-23850	-	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	132516	+	TSC_hg19_v1_chr5_+_145826895 NM_001040006 NM_006706 AK304319 BC006109 BC014151 BC062351 AK126455 BC111727 AB209910 AB464301 AF017789	240780	+	AB463658 AY351676 NM_194251 AK122627	309599	-	BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##AK128738|RBM27|54439|RNA binding motif protein 27##NM_020117|LARS|51520|leucyl-tRNA synthetase##BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3##NM_001040006|TCERG1|10915|transcription elongation regulator 1##NM_006706|TCERG1|10915|transcription elongation regulator 1##AK304319|TCERG1|10915|transcription elongation regulator 1##BC006109|TCERG1|10915|transcription elongation regulator 1##BC014151|TCERG1|10915|transcription elongation regulator 1##BC062351|TCERG1|10915|transcription elongation regulator 1##AK126455|TCERG1|10915|transcription elongation regulator 1##BC111727|TCERG1|10915|transcription elongation regulator 1##AB209910|TCERG1|10915|transcription elongation regulator 1##AF017789|TCERG1|10915|transcription elongation regulator 1##AY351676|GPR151|134391|G protein-coupled receptor 151##NM_194251|GPR151|134391|G protein-coupled receptor 151	0.116267	0.0	
chrX	49064521	49064600	reg1001175.p1	4.298	+	TSC_hg19_v1_chrX_-_49056653 AB464258 CU687900 AK313030 AK094376 AK295524 AK315953 BC064550 NM_003179	-7878	-	TSC_hg19_v1_chrX_+_49047887 CU687901	-16670	+	TSC_hg19_v1_chrX_-_49042854 AK299407	-21706	-	AF067227 JF701915 AF201304 AJ224874 NM_005183	25241	-	NM_014008 TSC_hg19_v1_chrX_+_49091929	27367	+	AK298264 TSC_hg19_v1_chrX_+_49091935 AK296911 AK291976	27388	+	AK313030|SYP|6855|synaptophysin##AK094376|SYP|6855|synaptophysin##AK295524|SYP|6855|synaptophysin##AK315953|SYP|6855|synaptophysin##BC064550|SYP|6855|synaptophysin##NM_003179|SYP|6855|synaptophysin##AK299407|PRICKLE3|4007|prickle homolog 3 (Drosophila)##AF067227|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##JF701915|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AF201304|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##AJ224874|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_005183|CACNA1F|778|calcium channel, voltage-dependent, L type, alpha 1F subunit##NM_014008|CCDC22|28952|coiled-coil domain containing 22##AK298264|CCDC22|28952|coiled-coil domain containing 22##AK296911|CCDC22|28952|coiled-coil domain containing 22##AK291976|CCDC22|28952|coiled-coil domain containing 22	1.321617	0.0	denovo_WM_7:-58:0.477	denovo_WM_7:-59:0.477
chr12	54116636	54116770	reg1011087.p1	4.297	+	NM_001002031	-46192	-	NM_005176	-46595	-	D28402 TSC_hg19_v1_chr12_-_54069859 AK130971	-46827	-	AB040969 TSC_hg19_v1_chr12_-_54121231 AF370415 AY563137 BC003177 AY358397 AL136895 AK122773 AK222646 AK092788 AX747731 AK294424 AK296497 AK309199 AK027881 AK315578 NM_001143682 NM_020898	4551	-	AF255676 NM_017410 BC090850 AF263466 BC002754 BT009908	215929	+	TSC_hg19_v1_chr12_+_54348683 AB464579 NM_173860	231995	+	NM_001002031|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)##NM_005176|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)##D28402|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)##AK130971|ATP5G2|517|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)##AB040969|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AF370415|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AY563137|CALCOCO1|57658|calcium binding and coiled-coil domain 1##BC003177|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AY358397|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AL136895|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK122773|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK222646|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK092788|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK294424|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK296497|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK309199|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK027881|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AK315578|CALCOCO1|57658|calcium binding and coiled-coil domain 1##NM_001143682|CALCOCO1|57658|calcium binding and coiled-coil domain 1##NM_020898|CALCOCO1|57658|calcium binding and coiled-coil domain 1##AF255676|HOXC13|3229|homeobox C13##NM_017410|HOXC13|3229|homeobox C13##BC090850|HOXC13|3229|homeobox C13##AF263466|HOXC13|3229|homeobox C13##BC002754|HOXC13|3229|homeobox C13##BT009908|HOXC13|3229|homeobox C13##NM_173860|HOXC12|3228|homeobox C12	2.58881	0.0	denovo_WM_7:32:0.237	denovo_WM_7:33:0.237	denovo_WM_7:34:0.234	denovo_WM_7:35:0.234	denovo_WM_7:56:0.539	denovo_WM_7:75:0.450
chr1	31904813	31904993	reg1007726.p2	4.297	+	AK093784 AK316357 AX748305 NM_001199039 NM_018565 AK296118	-18216	+	AY094595 NM_178865 TSC_hg19_v1_chr1_+_31886059 AK309409 AK308031 AY358560 BC063006 BC084580 BC126283 BC126285 GQ129287 GQ129288 HQ258415	-18837	+	NM_001199037 AK298512	-21870	+	NM_001204414 NM_022164 TSC_hg19_v1_chr1_+_32042115 AK292770 AK075398 AK296322 AK298382	137200	+	TSC_hg19_v1_chr1_+_32042122 AY358421	137219	+	TSC_hg19_v1_chr1_+_32042144 BC064633 AB050716 AK298038 AF236150 AF205436	137239	+	AK093784|SERINC2|347735|serine incorporator 2##AK316357|SERINC2|347735|serine incorporator 2##NM_001199039|SERINC2|347735|serine incorporator 2##NM_018565|SERINC2|347735|serine incorporator 2##AK296118|SERINC2|347735|serine incorporator 2##AY094595|SERINC2|347735|serine incorporator 2##NM_178865|SERINC2|347735|serine incorporator 2##AK309409|SERINC2|347735|serine incorporator 2##AK308031|SERINC2|347735|serine incorporator 2##AY358560|SERINC2|347735|serine incorporator 2##BC063006|SERINC2|347735|serine incorporator 2##BC084580|SERINC2|347735|serine incorporator 2##BC126283|SERINC2|347735|serine incorporator 2##BC126285|SERINC2|347735|serine incorporator 2##GQ129287|SERINC2|347735|serine incorporator 2##GQ129288|SERINC2|347735|serine incorporator 2##HQ258415|SERINC2|347735|serine incorporator 2##NM_001199037|SERINC2|347735|serine incorporator 2##AK298512|SERINC2|347735|serine incorporator 2##NM_001204414|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##NM_022164|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK292770|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK075398|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK296322|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK298382|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AY358421|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##BC064633|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AB050716|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK298038|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AF236150|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AF205436|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1	0.0	0.0	
chr13	98190813	98190919	reg1014630.p1	4.297	+	TSC_hg19_v1_chr13_+_98086683 AF205602 BC070031 EU832309 EU832393 X12534 AB464128 AF493914	-104164	+	TSC_hg19_v1_chr13_+_98086350 AK315139 NM_021033 BC041333	-104429	+	TSC_hg19_v1_chr13_+_97999294 AF339832	-191572	+	NM_002271 BC045640	415071	+	TSC_hg19_v1_chr13_+_98628928 BX648222 AK303494 AK225286 BC001497 BC019309 DQ893033 EU176755 U72761	437966	+	TSC_hg19_v1_chr13_+_98795412 NM_001001715 NM_005766	604555	+	AF205602|RAP2A|5911|RAP2A, member of RAS oncogene family##BC070031|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832309|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832393|RAP2A|5911|RAP2A, member of RAS oncogene family##X12534|RAP2A|5911|RAP2A, member of RAS oncogene family##AF493914|RAP2A|5911|RAP2A, member of RAS oncogene family##AK315139|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_021033|RAP2A|5911|RAP2A, member of RAS oncogene family##BC041333|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_002271|IPO5|3843|importin 5##BC045640|IPO5|3843|importin 5##BX648222|IPO5|3843|importin 5##AK303494|IPO5|3843|importin 5##AK225286|IPO5|3843|importin 5##BC001497|IPO5|3843|importin 5##BC019309|IPO5|3843|importin 5##DQ893033|IPO5|3843|importin 5##EU176755|IPO5|3843|importin 5##U72761|IPO5|3843|importin 5##NM_001001715|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##NM_005766|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	1.348612	0.0	denovo_WM_7:-22:0.216	denovo_WM_7:-25:0.336	denovo_WM_7:25:0.317
chr16	12157127	12157227	reg1014102.p1	4.297	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-86604	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-98093	+	NM_001130007	-146659	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	740474	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	740542	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	838291	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	1.062484	0.0	
chr2	225789888	225790020	reg1012685.p2	4.297	+	TSC_hg19_v1_chr2_-_225450116 NM_003590	-339834	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-339879	-	TSC_hg19_v1_chr2_-_225450043 AB014517 BC092409	-339913	-	TSC_hg19_v1_chr2_-_225811768 EU236710	21800	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	117394	-	NM_020864 BC131727 AB040919	475691	+	NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014517|CUL3|8452|cullin 3##BC092409|CUL3|8452|cullin 3##EU236710|DOCK10|55619|dedicator of cytokinesis 10##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2	0.980933	0.0	denovo_WM_7:-45:0.761
chr15	66227770	66227836	reg1009658.p1	4.296	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-65956	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-143210	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-143330	-	TSC_hg19_v1_chr15_-_66321664 AK054827	93890	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	318274	-	NM_133375 AK295392 BC022089	357842	+	AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like	0.0	0.0	
chr17	14022310	14022424	reg1008829.p2	4.296	+	TSC_hg19_v1_chr17_+_13972841 BC000060 BC006394 U09466 AK294213 AK295925 BT006985 CU674016 DQ893604 DQ895073	-49486	+	NM_001303 TSC_hg19_v1_chr17_+_13972839 AK312718	-49588	+	TSC_hg19_v1_chr17_-_13972756 AK123100	-49605	-	NM_001007530 BC146859 BC071823	117796	-	TSC_hg19_v1_chr17_+_14204397 AK023723 BC063301 AF105377 NM_006041 BC069664 BC069725	182078	+	CR541931 CR541953 M94048 NM_153322 S61788 TSC_hg19_v1_chr17_-_15164113	1141713	-	BC000060|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##BC006394|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##U09466|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK294213|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK295925|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##BT006985|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##DQ893604|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##DQ895073|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##NM_001303|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK312718|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##NM_001007530|CDRT15|146822|CMT1A duplicated region transcript 15##BC146859|CDRT15|146822|CMT1A duplicated region transcript 15##BC071823|CDRT15|146822|CMT1A duplicated region transcript 15##AK023723|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC063301|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##AF105377|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##NM_006041|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC069664|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC069725|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##CR541931|PMP22|5376|peripheral myelin protein 22##CR541953|PMP22|5376|peripheral myelin protein 22##M94048|PMP22|5376|peripheral myelin protein 22##NM_153322|PMP22|5376|peripheral myelin protein 22##S61788|PMP22|5376|peripheral myelin protein 22	0.037804	0.0	
chr3	10019887	10020030	reg1010249.p2	4.296	+	BC089447 AK296317 TSC_hg19_v1_chr3_-_9994093 AY358158 AK090993 AX746722 BC040508 NM_207351	-25880	-	TSC_hg19_v1_chr3_+_9975538 AL050275 NM_015513 NM_001031717 NM_001077415 BC008720 AY358363 AK314113	-44412	+	NM_001203263 NM_001203264 NM_001203265 NM_032732 NM_153460 AK092907 AK290670 AK294616 AK295377 AK315024 AX747801 AY359098 NM_153461 AK075534 AK096824 AK308241 AF458065 BC006411 AK225650 AY358840 AK315053 AK303171 EF676032	-61157	+	CU692722 TSC_hg19_v1_chr3_-_10028505 BC022807	8467	-	BC010883 TSC_hg19_v1_chr3_-_10028526 AK312008 AK172843 AF157321 AK222953 NM_018447	8568	-	TSC_hg19_v1_chr3_+_10028599 AK092352 AX747493	8632	+	BC089447|PRRT3|285368|proline-rich transmembrane protein 3##AY358158|PRRT3|285368|proline-rich transmembrane protein 3##AK090993|PRRT3|285368|proline-rich transmembrane protein 3##BC040508|PRRT3|285368|proline-rich transmembrane protein 3##NM_207351|PRRT3|285368|proline-rich transmembrane protein 3##AL050275|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_015513|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001031717|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001077415|CRELD1|78987|cysteine-rich with EGF-like domains 1##BC008720|CRELD1|78987|cysteine-rich with EGF-like domains 1##AY358363|CRELD1|78987|cysteine-rich with EGF-like domains 1##AK314113|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001203263|IL17RC|84818|interleukin 17 receptor C##NM_001203264|IL17RC|84818|interleukin 17 receptor C##NM_001203265|IL17RC|84818|interleukin 17 receptor C##NM_032732|IL17RC|84818|interleukin 17 receptor C##NM_153460|IL17RC|84818|interleukin 17 receptor C##AK092907|IL17RC|84818|interleukin 17 receptor C##AK290670|IL17RC|84818|interleukin 17 receptor C##AK294616|IL17RC|84818|interleukin 17 receptor C##AK295377|IL17RC|84818|interleukin 17 receptor C##AK315024|IL17RC|84818|interleukin 17 receptor C##AY359098|IL17RC|84818|interleukin 17 receptor C##NM_153461|IL17RC|84818|interleukin 17 receptor C##AK075534|IL17RC|84818|interleukin 17 receptor C##AK096824|IL17RC|84818|interleukin 17 receptor C##AK308241|IL17RC|84818|interleukin 17 receptor C##AF458065|IL17RC|84818|interleukin 17 receptor C##BC006411|IL17RC|84818|interleukin 17 receptor C##AK225650|IL17RC|84818|interleukin 17 receptor C##AY358840|IL17RC|84818|interleukin 17 receptor C##AK315053|IL17RC|84818|interleukin 17 receptor C##AK303171|IL17RC|84818|interleukin 17 receptor C##EF676032|IL17RC|84818|interleukin 17 receptor C##BC022807|TMEM111|55831|transmembrane protein 111##BC010883|TMEM111|55831|transmembrane protein 111##AK312008|TMEM111|55831|transmembrane protein 111##AK172843|TMEM111|55831|transmembrane protein 111##AF157321|TMEM111|55831|transmembrane protein 111##AK222953|TMEM111|55831|transmembrane protein 111##NM_018447|TMEM111|55831|transmembrane protein 111##AK092352|LOC442075|442075|uncharacterized LOC442075	1.044267	0.0	
chr6	85108838	85108915	reg1010611.p2	4.296	+	AB023226 AK308190 BC063632 NM_014895 TSC_hg19_v1_chr6_-_84937334	-171552	-	TSC_hg19_v1_chr6_+_84743459 AK090775 AX746611 NM_138409 BC010003 AK307078 AK292736 BC039855	-365470	+	TSC_hg19_v1_chr6_+_84569438 AB527313 AM393033	-539412	+	TSC_hg19_v1_chr6_-_85472330 AJ010278	363449	-	AK310179 BC040697 TSC_hg19_v1_chr6_-_85473172	364294	-	HQ258462 NM_001080508 BC157841 BC132715	365049	-	AB023226|KIAA1009|22832|KIAA1009##AK308190|KIAA1009|22832|KIAA1009##BC063632|KIAA1009|22832|KIAA1009##NM_014895|KIAA1009|22832|KIAA1009##AK090775|MRAP2|112609|melanocortin 2 receptor accessory protein 2##NM_138409|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC010003|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK307078|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK292736|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC039855|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AM393033|CYB5R4|51167|cytochrome b5 reductase 4##AJ010278|TBX18|9096|T-box 18##AK310179|TBX18|9096|T-box 18##BC040697|TBX18|9096|T-box 18##HQ258462|TBX18|9096|T-box 18##NM_001080508|TBX18|9096|T-box 18##BC157841|TBX18|9096|T-box 18##BC132715|TBX18|9096|T-box 18	0.645116	0.0	denovo_WM_7:55:0.645
chr10	111916125	111916283	reg1011301.p1	4.295	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-148237	+	TSC_hg19_v1_chr10_+_111767741 BX647403 NM_001121 NM_016824 BC062559 BX648016	-148475	+	NM_019903 AB209810 BC057285	-150423	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	51155	+	BC012907 NM_001008541	53784	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	69617	+	AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##BX647403|ADD3|120|adducin 3 (gamma)##NM_001121|ADD3|120|adducin 3 (gamma)##NM_016824|ADD3|120|adducin 3 (gamma)##BC062559|ADD3|120|adducin 3 (gamma)##BX648016|ADD3|120|adducin 3 (gamma)##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1	0.999635	0.0	
chr18	72152212	72152320	reg1007136.p1	4.295	+	TSC_hg19_v1_chr18_-_72124545 NM_001044369	-27737	-	CR749350 NM_001174123	-169157	+	CR456990 CU677229 DQ891283 DQ894343 M60174 TSC_hg19_v1_chr18_-_71959202 M22865 AK026310 BC015182 AB209617 NM_001190807 NM_001914 NM_148923	-193087	-	TSC_hg19_v1_chr18_+_72163567 NM_018235	11192	+	TSC_hg19_v1_chr18_+_72163611 AK001692 AK300904 AK298309 BC001375	11349	+	TSC_hg19_v1_chr18_+_72166580 AK097155	14329	+	NM_001044369|FAM69C|125704|family with sequence similarity 69, member C##CR749350|C18orf63|644041|chromosome 18 open reading frame 63##NM_001174123|C18orf63|644041|chromosome 18 open reading frame 63##CR456990|CYB5A|1528|cytochrome b5 type A (microsomal)##DQ891283|CYB5A|1528|cytochrome b5 type A (microsomal)##DQ894343|CYB5A|1528|cytochrome b5 type A (microsomal)##M60174|CYB5A|1528|cytochrome b5 type A (microsomal)##M22865|CYB5A|1528|cytochrome b5 type A (microsomal)##AK026310|CYB5A|1528|cytochrome b5 type A (microsomal)##BC015182|CYB5A|1528|cytochrome b5 type A (microsomal)##AB209617|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_001190807|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_001914|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_148923|CYB5A|1528|cytochrome b5 type A (microsomal)##NM_018235|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK001692|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK300904|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK298309|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##BC001375|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK097155|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)	0.157441	0.0	
chr15	99647903	99648033	reg1004582.p1	4.294	+	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	-2728	+	AK058162 NM_001167902	-96945	-	BC104743 BC104744 BC105686 NM_001102612	-99131	-	TSC_hg19_v1_chr15_-_99789787 BC015728 AF411456 NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_022905	141738	-	TSC_hg19_v1_chr15_-_99791423 AK023230 AK291690	143448	-	TSC_hg19_v1_chr15_+_99791696 BC047306 NM_144598 AK091588 AK296352 AX747076 AK295161 AK292887 AK293832 AY358082 BC019704	143674	+	BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein##AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC015728|TTC23|64927|tetratricopeptide repeat domain 23##AF411456|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040655|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040656|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040657|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040658|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040659|TTC23|64927|tetratricopeptide repeat domain 23##NM_001040660|TTC23|64927|tetratricopeptide repeat domain 23##NM_022905|TTC23|64927|tetratricopeptide repeat domain 23##AK023230|TTC23|64927|tetratricopeptide repeat domain 23##AK291690|TTC23|64927|tetratricopeptide repeat domain 23##BC047306|LRRC28|123355|leucine rich repeat containing 28##NM_144598|LRRC28|123355|leucine rich repeat containing 28##AK091588|LRRC28|123355|leucine rich repeat containing 28##AK296352|LRRC28|123355|leucine rich repeat containing 28##AK295161|LRRC28|123355|leucine rich repeat containing 28##AK292887|LRRC28|123355|leucine rich repeat containing 28##AK293832|LRRC28|123355|leucine rich repeat containing 28##AY358082|LRRC28|123355|leucine rich repeat containing 28##BC019704|LRRC28|123355|leucine rich repeat containing 28	0.0	0.0	
chr4	48227716	48227896	reg1008038.p1	4.294	+	BC017829 L27071 NM_003328	-91548	-	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-209003	+	X64802 TSC_hg19_v1_chr4_-_48018662	-209169	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	44029	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	115605	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	115807	+	BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2	1.962345	0.0	denovo_WM_7:-65:0.958	denovo_WM_7:-80:0.299	denovo_WM_7:-81:0.642
chr5	158351844	158351963	reg1010237.p1	4.294	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1065813	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1167523	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1181163	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	174554	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	174839	-	AK304228 NM_001199382	282745	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	1.118746	0.0	denovo_WM_7:-35:0.210
chr10	6654404	6654520	reg1012234.p2	4.293	+	TSC_hg19_v1_chr10_+_6622460 AY007155	-31982	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	-32201	-	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-409586	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	796788	-	BC144327 AK090887 AX746664 NM_001029880 TSC_hg19_v1_chr10_-_7453453	798972	-	AK027849 TSC_hg19_v1_chr10_-_7659249	1004755	-	AY007155|LOC439949|439949|uncharacterized LOC439949##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2##BC144327|SFMBT2|57713|Scm-like with four mbt domains 2##AK090887|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001029880|SFMBT2|57713|Scm-like with four mbt domains 2##AK027849|ITIH5|80760|inter-alpha-trypsin inhibitor heavy chain family, member 5	0.0	0.0	
chr10	72124388	72124489	reg1011157.p2	4.293	+	TSC_hg19_v1_chr10_-_72083680 AL122117	-40740	-	NM_022146	-80989	-	AF108211 AB590125 AF217186 DQ893597 AB026723 TSC_hg19_v1_chr10_-_71993148 BC107882 AF154065 BC105034 BC105036 AF092439 AF119665 BC001022 BC061581 AK058193 NM_021129	-131285	-	BC024001 AY358318 NM_207119	16942	-	AK094734 TSC_hg19_v1_chr10_-_72142380 AK001613 AK001706 NM_018205 NM_018239	17926	-	NM_004096 TSC_hg19_v1_chr10_+_72163879	39432	+	AL122117|LRRC20|55222|leucine rich repeat containing 20##NM_022146|NPFFR1|64106|neuropeptide FF receptor 1##AF108211|PPA1|5464|pyrophosphatase (inorganic) 1##AF217186|PPA1|5464|pyrophosphatase (inorganic) 1##DQ893597|PPA1|5464|pyrophosphatase (inorganic) 1##AB026723|PPA1|5464|pyrophosphatase (inorganic) 1##BC107882|PPA1|5464|pyrophosphatase (inorganic) 1##AF154065|PPA1|5464|pyrophosphatase (inorganic) 1##BC105034|PPA1|5464|pyrophosphatase (inorganic) 1##BC105036|PPA1|5464|pyrophosphatase (inorganic) 1##AF092439|PPA1|5464|pyrophosphatase (inorganic) 1##AF119665|PPA1|5464|pyrophosphatase (inorganic) 1##BC001022|PPA1|5464|pyrophosphatase (inorganic) 1##BC061581|PPA1|5464|pyrophosphatase (inorganic) 1##AK058193|PPA1|5464|pyrophosphatase (inorganic) 1##NM_021129|PPA1|5464|pyrophosphatase (inorganic) 1##BC024001|LRRC20|55222|leucine rich repeat containing 20##AY358318|LRRC20|55222|leucine rich repeat containing 20##NM_207119|LRRC20|55222|leucine rich repeat containing 20##AK094734|LRRC20|55222|leucine rich repeat containing 20##AK001613|LRRC20|55222|leucine rich repeat containing 20##AK001706|LRRC20|55222|leucine rich repeat containing 20##NM_018205|LRRC20|55222|leucine rich repeat containing 20##NM_018239|LRRC20|55222|leucine rich repeat containing 20##NM_004096|EIF4EBP2|1979|eukaryotic translation initiation factor 4E binding protein 2	0.0	0.996724	CTCF.p2:6:0.997
chr11	33085048	33085178	reg1012775.p2	4.293	+	NM_001145541 AK002198	-23545	+	TSC_hg19_v1_chr11_+_33061291 BC030582	-23791	+	NM_018393 AK090646 TSC_hg19_v1_chr11_+_33061117 BC041696	-24031	+	AB527773 CU679493 BC059948 TSC_hg19_v1_chr11_-_33183016 U15782 BC108319 BC009792 AK297371 AK290836 NM_001033505 NM_001033506 NM_001326	97863	-	NM_001048200 NM_005734 TSC_hg19_v1_chr11_+_33279272 Y09306 AF305239	194172	+	TSC_hg19_v1_chr11_+_33279873 AK293009	194756	+	NM_001145541|TCP11L1|55346|t-complex 11 (mouse)-like 1##AK002198|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC030582|TCP11L1|55346|t-complex 11 (mouse)-like 1##NM_018393|TCP11L1|55346|t-complex 11 (mouse)-like 1##AK090646|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC041696|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC059948|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##U15782|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##BC108319|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##BC009792|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##AK297371|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##AK290836|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##NM_001033505|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##NM_001033506|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##NM_001326|CSTF3|1479|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa##NM_001048200|HIPK3|10114|homeodomain interacting protein kinase 3##NM_005734|HIPK3|10114|homeodomain interacting protein kinase 3##Y09306|HIPK3|10114|homeodomain interacting protein kinase 3##AF305239|HIPK3|10114|homeodomain interacting protein kinase 3##AK293009|HIPK3|10114|homeodomain interacting protein kinase 3	0.63207	0.0	denovo_WM_7:15:0.305
chr14	34596889	34597069	reg1008888.p2	4.293	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-176830	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1188489	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1798443	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	334508	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	411906	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	502376	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.0	0.0	
chr19	13319040	13319178	reg1013062.p2	4.293	+	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-54929	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-57817	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-57970	-	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	298067	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	523470	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	539610	+	BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130	0.0	0.0	
chr20	30642085	30642233	reg1014857.p2	4.293	+	TSC_hg19_v1_chr20_+_30640055 NM_001172129 NM_001172130 NM_001172131 NM_001172132 NM_001172133 NM_002110 AK289896 AK225819 AK290928 AK298726 AK026432 BC108930 BC108931 BC113854 BC114463 AK314335 BC073748 BC094847 BC014435	-2113	+	NM_080625 AK057090 BC030254	-43911	+	AY534245 NM_001011718 TSC_hg19_v1_chr20_+_30555960	-86270	+	TSC_hg19_v1_chr20_+_30697308 NM_014742	55210	+	TSC_hg19_v1_chr20_+_30697532 AK126534 AK294980 AK296500 AK302439 BC021107 D87444	55382	+	TSC_hg19_v1_chr20_-_30795547 AK292450 BC000197 D83784 AF006005 BC023655 NM_002657	153316	-	NM_001172129|HCK|3055|hemopoietic cell kinase##NM_001172130|HCK|3055|hemopoietic cell kinase##NM_001172131|HCK|3055|hemopoietic cell kinase##NM_001172132|HCK|3055|hemopoietic cell kinase##NM_001172133|HCK|3055|hemopoietic cell kinase##NM_002110|HCK|3055|hemopoietic cell kinase##AK289896|HCK|3055|hemopoietic cell kinase##AK225819|HCK|3055|hemopoietic cell kinase##AK290928|HCK|3055|hemopoietic cell kinase##AK298726|HCK|3055|hemopoietic cell kinase##AK026432|HCK|3055|hemopoietic cell kinase##BC108930|HCK|3055|hemopoietic cell kinase##BC108931|HCK|3055|hemopoietic cell kinase##BC113854|HCK|3055|hemopoietic cell kinase##BC114463|HCK|3055|hemopoietic cell kinase##AK314335|HCK|3055|hemopoietic cell kinase##BC073748|HCK|3055|hemopoietic cell kinase##BC094847|HCK|3055|hemopoietic cell kinase##BC014435|HCK|3055|hemopoietic cell kinase##NM_080625|C20orf160|140706|chromosome 20 open reading frame 160##AK057090|C20orf160|140706|chromosome 20 open reading frame 160##BC030254|C20orf160|140706|chromosome 20 open reading frame 160##AY534245|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_001011718|XKR7|343702|XK, Kell blood group complex subunit-related family, member 7##NM_014742|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK126534|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK294980|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK296500|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK302439|TM9SF4|9777|transmembrane 9 superfamily protein member 4##BC021107|TM9SF4|9777|transmembrane 9 superfamily protein member 4##D87444|TM9SF4|9777|transmembrane 9 superfamily protein member 4##AK292450|PLAGL2|5326|pleiomorphic adenoma gene-like 2##D83784|PLAGL2|5326|pleiomorphic adenoma gene-like 2##AF006005|PLAGL2|5326|pleiomorphic adenoma gene-like 2##BC023655|PLAGL2|5326|pleiomorphic adenoma gene-like 2##NM_002657|PLAGL2|5326|pleiomorphic adenoma gene-like 2	0.0	0.0	
chr5	5420514	5420657	reg1016780.p1	4.293	+	AK127746 DQ266047 NM_139056 TSC_hg19_v1_chr5_+_5140442 AB462933 AJ315734	-280074	+	AY335938 NM_024337	-1824418	+	AY249325 NM_178569 BC101608 BC101634 BC143638 BC143639 BC143640 BC171731	-2668284	+	TSC_hg19_v1_chr5_+_5422777 AK126937	2190	+	TSC_hg19_v1_chr5_+_5422794 AB023164 NM_015325 AB384549	2324	+	AB591030 AY277599 AY598325 TSC_hg19_v1_chr5_-_6378661 AY453397 BC003353 NM_032286	958065	-	AK127746|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##DQ266047|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##NM_139056|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AJ315734|ADAMTS16|170690|ADAM metallopeptidase with thrombospondin type 1 motif, 16##AY335938|IRX1|79192|iroquois homeobox 1##NM_024337|IRX1|79192|iroquois homeobox 1##AY249325|C5orf38|153571|chromosome 5 open reading frame 38##NM_178569|C5orf38|153571|chromosome 5 open reading frame 38##BC101608|C5orf38|153571|chromosome 5 open reading frame 38##BC101634|C5orf38|153571|chromosome 5 open reading frame 38##BC143638|C5orf38|153571|chromosome 5 open reading frame 38##BC143639|C5orf38|153571|chromosome 5 open reading frame 38##BC143640|C5orf38|153571|chromosome 5 open reading frame 38##BC171731|C5orf38|153571|chromosome 5 open reading frame 38##AB023164|KIAA0947|23379|KIAA0947##NM_015325|KIAA0947|23379|KIAA0947##AY277599|MED10|84246|mediator complex subunit 10##AY598325|MED10|84246|mediator complex subunit 10##AY453397|MED10|84246|mediator complex subunit 10##BC003353|MED10|84246|mediator complex subunit 10##NM_032286|MED10|84246|mediator complex subunit 10	0.0	0.0	
chr8	42645751	42645846	reg1004682.p2	4.293	+	NM_001199279 NM_004198	-21870	-	BC069681 BC069703 BC069788 NM_000749 Y08417 U62438 CU686976 CU686982	-93173	+	TSC_hg19_v1_chr8_-_42397069 BC028600 NM_006749	-248737	-	AL832077 BC021721 AK223231 TSC_hg19_v1_chr8_-_42698469 AK001339 NM_018105 NM_199003	52663	-	BC039461 BC032393 BC013422 AK225086 AL136620 AK225568 AK027748 AK090864 AX746655 BC058289 BC044566 NM_001160223 NM_001160224 NM_001160225 NM_030954	105945	-	TSC_hg19_v1_chr8_+_42752068 BC048304 NM_032410	106254	+	NM_001199279|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##NM_004198|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##BC069681|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069703|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069788|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##NM_000749|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##Y08417|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##U62438|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC028600|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_006749|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##AL832077|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC021721|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK223231|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK001339|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_018105|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_199003|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC039461|RNF170|81790|ring finger protein 170##BC032393|RNF170|81790|ring finger protein 170##BC013422|RNF170|81790|ring finger protein 170##AK225086|RNF170|81790|ring finger protein 170##AL136620|RNF170|81790|ring finger protein 170##AK225568|RNF170|81790|ring finger protein 170##AK027748|RNF170|81790|ring finger protein 170##AK090864|RNF170|81790|ring finger protein 170##BC058289|RNF170|81790|ring finger protein 170##BC044566|RNF170|81790|ring finger protein 170##NM_001160223|RNF170|81790|ring finger protein 170##NM_001160224|RNF170|81790|ring finger protein 170##NM_001160225|RNF170|81790|ring finger protein 170##NM_030954|RNF170|81790|ring finger protein 170##BC048304|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032410|HOOK3|84376|hook homolog 3 (Drosophila)	0.996744	0.0	denovo_WM_7:-10:0.449	denovo_WM_7:-11:0.449
chr8	76643452	76643543	reg1013167.p1	4.293	+	BX571750 NM_004133 EU832451 HQ692842	-191283	+	TSC_hg19_v1_chr8_+_76320132 BC054009 Z49826	-323309	+	NM_031461 TSC_hg19_v1_chr8_+_75896739 AY358564 BC020514 AK314048 AL834301 AF142573	-746588	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	950013	+	AB083343 TSC_hg19_v1_chr8_+_77593533	950031	+	AK131399 TSC_hg19_v1_chr8_+_77765961	1122392	+	BX571750|HNF4G|3174|hepatocyte nuclear factor 4, gamma##NM_004133|HNF4G|3174|hepatocyte nuclear factor 4, gamma##EU832451|HNF4G|3174|hepatocyte nuclear factor 4, gamma##HQ692842|HNF4G|3174|hepatocyte nuclear factor 4, gamma##BC054009|HNF4G|3174|hepatocyte nuclear factor 4, gamma##Z49826|HNF4G|3174|hepatocyte nuclear factor 4, gamma##NM_031461|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AY358564|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##BC020514|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AK314048|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AL834301|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AF142573|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4##AB083343|ZFHX4|79776|zinc finger homeobox 4##AK131399|ZFHX4|79776|zinc finger homeobox 4	0.717063	0.0	denovo_WM_7:-106:0.717
chr10	111259139	111259294	reg1013269.p1	4.292	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-2334840	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-2800157	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-4858171	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	423993	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	424061	-	NM_019903 AB209810 BC057285	506565	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	1.991582	0.0	denovo_WM_7:-36:0.344	denovo_WM_7:-37:0.332	denovo_WM_7:-38:0.320	denovo_WM_7:-53:0.958
chr1	32447258	32447419	reg1003143.p3	4.292	+	TSC_hg19_v1_chr1_-_32403992 NM_080391	-43341	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	-43407	-	NM_001195100 NM_001195101	-62080	-	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	32160	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	91166	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	91236	+	NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195100|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##NM_001195101|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B	0.0	0.0	
chr16	21369882	21370016	reg1015007.p2	4.292	+	BX648477 NM_001014444 NM_001888	-55562	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-80301	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-80356	-	BC036263 NM_130464	66708	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	161803	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	240941	+	BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9	0.031455	0.0	
chr16	57578287	57578432	reg1012719.p1	4.292	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	-1771	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	-1805	+	BC008285 BC009941 NM_033212	-7894	-	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	75296	+	NM_001145770 NM_005682 AK075270 AY358400	75589	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	84095	+	BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56##NM_001145770|GPR56|9289|G protein-coupled receptor 56##NM_005682|GPR56|9289|G protein-coupled receptor 56##AK075270|GPR56|9289|G protein-coupled receptor 56##AY358400|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56	0.0	0.0	
chr12	58230415	58230521	reg1011156.p1	4.291	+	BC111730 AF041449 NM_006576	-20623	-	NM_001172695 NM_001172696 NM_001172697 NM_005726 TSC_hg19_v1_chr12_+_58176558 AK304621 AK313453 BC022862 AK295323 AK308981 BC093068 AF110399	-53909	+	TSC_hg19_v1_chr12_+_58166438 AK024983 AK292276 AL050100 AB528834 AM393242 AM393762 CU677623	-63997	+	AB385539 AY279531 CU688100 TSC_hg19_v1_chr12_-_58240364	9825	-	TSC_hg19_v1_chr12_-_58240463 BC065920 AF022231	9987	-	TSC_hg19_v1_chr12_-_58240486 BC018922 AK310183	10011	-	BC111730|AVIL|10677|advillin##AF041449|AVIL|10677|advillin##NM_006576|AVIL|10677|advillin##NM_001172695|TSFM|10102|Ts translation elongation factor, mitochondrial##NM_001172696|TSFM|10102|Ts translation elongation factor, mitochondrial##NM_001172697|TSFM|10102|Ts translation elongation factor, mitochondrial##NM_005726|TSFM|10102|Ts translation elongation factor, mitochondrial##AK304621|TSFM|10102|Ts translation elongation factor, mitochondrial##AK313453|TSFM|10102|Ts translation elongation factor, mitochondrial##BC022862|TSFM|10102|Ts translation elongation factor, mitochondrial##AK295323|TSFM|10102|Ts translation elongation factor, mitochondrial##AK308981|TSFM|10102|Ts translation elongation factor, mitochondrial##BC093068|TSFM|10102|Ts translation elongation factor, mitochondrial##AF110399|TSFM|10102|Ts translation elongation factor, mitochondrial##AK024983|METTL21B|25895|methyltransferase like 21B##AK292276|METTL21B|25895|methyltransferase like 21B##AL050100|METTL21B|25895|methyltransferase like 21B##AM393242|METTL21B|25895|methyltransferase like 21B##AM393762|METTL21B|25895|methyltransferase like 21B##AY279531|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##BC065920|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AF022231|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##BC018922|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2##AK310183|CTDSP2|10106|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	0.01782	0.0	
chr14	35008934	35009083	reg1012325.p2	4.291	+	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	-123	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	-77521	-	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-588859	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	90347	-	BC011444 AK314157 NM_021914 AF134802	173980	-	TSC_hg19_v1_chr14_-_35183800 NM_001243645 AF134803 BC022364 BC022876 BC025683 NM_138638	174867	-	AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6##BC011444|CFL2|1073|cofilin 2 (muscle)##AK314157|CFL2|1073|cofilin 2 (muscle)##NM_021914|CFL2|1073|cofilin 2 (muscle)##AF134802|CFL2|1073|cofilin 2 (muscle)##NM_001243645|CFL2|1073|cofilin 2 (muscle)##AF134803|CFL2|1073|cofilin 2 (muscle)##BC022364|CFL2|1073|cofilin 2 (muscle)##BC022876|CFL2|1073|cofilin 2 (muscle)##BC025683|CFL2|1073|cofilin 2 (muscle)##NM_138638|CFL2|1073|cofilin 2 (muscle)	0.710024	0.0	denovo_WM_7:65:0.551
chr17	70017759	70017893	reg1008679.p2	4.291	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1852130	+	BC033038 NM_170742	-1916832	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1946396	+	TSC_hg19_v1_chr17_-_70116937 AL833139	99112	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	99333	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	99344	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.0	0.0	
chr19	50371171	50371297	reg1011813.p2	4.291	+	AF120499 BC033822 TSC_hg19_v1_chr19_-_50370821 NM_007254	-412	-	TSC_hg19_v1_chr19_-_50354936 BC043359	-16297	-	TSC_hg19_v1_chr19_+_50354438 AJ617480 BC042921 U79287	-16704	+	TSC_hg19_v1_chr19_-_50379904 AK316603	8660	-	BC016043 BC007416 AK226004 BC051844 TSC_hg19_v1_chr19_-_50380601 BC015562 NM_032375 AK123687 NM_001098633 NM_001098632	9313	-	NM_001168222 NM_024682 TSC_hg19_v1_chr19_+_50380945 BC003516 AK022230 AK300007 AK309412 AB449903 AB590884 CU678472	9615	+	AF120499|PNKP|11284|polynucleotide kinase 3'-phosphatase##BC033822|PNKP|11284|polynucleotide kinase 3'-phosphatase##NM_007254|PNKP|11284|polynucleotide kinase 3'-phosphatase##BC043359|LOC100506033|100506033|uncharacterized LOC100506033##AJ617480|PTOV1|53635|prostate tumor overexpressed 1##BC042921|PTOV1|53635|prostate tumor overexpressed 1##U79287|PTOV1|53635|prostate tumor overexpressed 1##AK316603|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC016043|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC007416|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##AK226004|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC051844|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##BC015562|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_032375|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##AK123687|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001098633|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001098632|AKT1S1|84335|AKT1 substrate 1 (proline-rich)##NM_001168222|TBC1D17|79735|TBC1 domain family, member 17##NM_024682|TBC1D17|79735|TBC1 domain family, member 17##BC003516|TBC1D17|79735|TBC1 domain family, member 17##AK022230|TBC1D17|79735|TBC1 domain family, member 17##AK300007|TBC1D17|79735|TBC1 domain family, member 17##AK309412|TBC1D17|79735|TBC1 domain family, member 17##AB449903|TBC1D17|79735|TBC1 domain family, member 17	0.992582	0.0	
chr2	164872031	164872199	reg1012107.p1	4.291	+	BX649105 NM_018086 TSC_hg19_v1_chr2_-_164592519 AK125324	-279598	-	BC035815 TSC_hg19_v1_chr2_-_163695255 NM_033272 NM_173162	-1176868	-	CU690212 AF032897 TSC_hg19_v1_chr2_-_163695217	-1176991	-	AK309590 TSC_hg19_v1_chr2_-_165424995 AK301961 AK302129	552889	-	AB527527 EU832411 BC053559 TSC_hg19_v1_chr2_-_165477962	605778	-	TSC_hg19_v1_chr2_-_165477987 AK307744 AK313153	605878	-	BX649105|FIGN|55137|fidgetin##NM_018086|FIGN|55137|fidgetin##AK125324|FIGN|55137|fidgetin##BC035815|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7##NM_033272|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7##NM_173162|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7##AF032897|KCNH7|90134|potassium voltage-gated channel, subfamily H (eag-related), member 7##AK309590|GRB14|2888|growth factor receptor-bound protein 14##AK301961|GRB14|2888|growth factor receptor-bound protein 14##AK302129|GRB14|2888|growth factor receptor-bound protein 14##EU832411|GRB14|2888|growth factor receptor-bound protein 14##BC053559|GRB14|2888|growth factor receptor-bound protein 14##AK307744|GRB14|2888|growth factor receptor-bound protein 14##AK313153|GRB14|2888|growth factor receptor-bound protein 14	0.0	0.0	
chr6	139483122	139483246	reg1014635.p1	4.291	+	BC070068 AB033492 NM_016217 TSC_hg19_v1_chr6_+_139456250	-26928	+	TSC_hg19_v1_chr6_+_139349935 AK309402 AF116682 BC014953	-133266	+	NM_021243 AF161398 TSC_hg19_v1_chr6_+_139349850	-133347	+	TSC_hg19_v1_chr6_-_139613136 BX647633 AL834248 AL831988 AK314725 BX647477 BC115383 BC115384 AB085905 NM_153235	129976	-	NM_001168389 NM_001168388	212239	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	212577	-	BC070068|HECA|51696|headcase homolog (Drosophila)##AB033492|HECA|51696|headcase homolog (Drosophila)##NM_016217|HECA|51696|headcase homolog (Drosophila)##AF116682|C6orf115|58527|chromosome 6 open reading frame 115##BC014953|C6orf115|58527|chromosome 6 open reading frame 115##NM_021243|C6orf115|58527|chromosome 6 open reading frame 115##AF161398|C6orf115|58527|chromosome 6 open reading frame 115##BX647633|TXLNB|167838|taxilin beta##AL834248|TXLNB|167838|taxilin beta##AL831988|TXLNB|167838|taxilin beta##AK314725|TXLNB|167838|taxilin beta##BX647477|TXLNB|167838|taxilin beta##BC115383|TXLNB|167838|taxilin beta##BC115384|TXLNB|167838|taxilin beta##AB085905|TXLNB|167838|taxilin beta##NM_153235|TXLNB|167838|taxilin beta##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	0.0	0.0	
chr2	178029425	178029548	reg1013525.p1	4.290	+	BC013438 TSC_hg19_v1_chr2_-_177502718	-526798	-	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-895247	+	AF241528 NM_024501 TSC_hg19_v1_chr2_+_177053395 AK314120 BC014477 BC028190 DQ892237 DQ895437 AB464583	-976070	+	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	47988	+	AK311688 NM_001145412 NM_001145413	99085	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	99890	-	BC013438|LOC375295|375295|uncharacterized LOC375295##NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AF241528|HOXD1|3231|homeobox D1##NM_024501|HOXD1|3231|homeobox D1##AK314120|HOXD1|3231|homeobox D1##BC014477|HOXD1|3231|homeobox D1##BC028190|HOXD1|3231|homeobox D1##DQ892237|HOXD1|3231|homeobox D1##DQ895437|HOXD1|3231|homeobox D1##NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	0.018869	0.357964	CTCF.p2:-4:0.358
chr9	132546117	132546297	reg1015832.p2	4.290	+	AB590756 AF027740 AF217965 AF010316 TSC_hg19_v1_chr9_-_132515313 AK311947 BC008280 NM_004878	-30891	-	TSC_hg19_v1_chr9_+_132428029 AF061970	-118141	+	BC014645 NM_016307 TSC_hg19_v1_chr9_+_132427927	-118284	+	TSC_hg19_v1_chr9_+_132565426 AF317129 NM_014506	19213	+	TSC_hg19_v1_chr9_+_132565465 BC015578 DQ893204 DQ893205 DQ893696 DQ896532 DQ896533 DQ896867	19266	+	BT006931 AB590352 DQ892657 DQ895897 TSC_hg19_v1_chr9_-_132586385 BC014484 AK314505 AK075343	40173	-	AF027740|PTGES|9536|prostaglandin E synthase##AF217965|PTGES|9536|prostaglandin E synthase##AF010316|PTGES|9536|prostaglandin E synthase##AK311947|PTGES|9536|prostaglandin E synthase##BC008280|PTGES|9536|prostaglandin E synthase##NM_004878|PTGES|9536|prostaglandin E synthase##AF061970|PRRX2|51450|paired related homeobox 2##BC014645|PRRX2|51450|paired related homeobox 2##NM_016307|PRRX2|51450|paired related homeobox 2##AF317129|TOR1B|27348|torsin family 1, member B (torsin B)##NM_014506|TOR1B|27348|torsin family 1, member B (torsin B)##BC015578|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893204|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893205|TOR1B|27348|torsin family 1, member B (torsin B)##DQ893696|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896532|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896533|TOR1B|27348|torsin family 1, member B (torsin B)##DQ896867|TOR1B|27348|torsin family 1, member B (torsin B)##BT006931|TOR1A|1861|torsin family 1, member A (torsin A)##DQ892657|TOR1A|1861|torsin family 1, member A (torsin A)##DQ895897|TOR1A|1861|torsin family 1, member A (torsin A)##BC014484|TOR1A|1861|torsin family 1, member A (torsin A)##AK314505|TOR1A|1861|torsin family 1, member A (torsin A)##AK075343|TOR1A|1861|torsin family 1, member A (torsin A)	0.0	0.630975	CTCF.p2:11:0.631
chr10	73922852	73922992	reg1012953.p1	4.289	+	D87465 TSC_hg19_v1_chr10_-_73848773 NM_001134434 NM_014767	-74145	-	BC023558 NM_001244950	-74392	-	TSC_hg19_v1_chr10_-_73848310 AJ001453	-74582	-	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	52842	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	52866	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	53189	-	D87465|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_001134434|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_014767|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##BC023558|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##NM_001244950|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1	0.0	0.0	
chr1	64079139	64079319	reg1005403.p1	4.289	+	AK293298 NM_001172819 AK298505	-19715	+	TSC_hg19_v1_chr1_+_64059081 AK294186 BC019920 NM_002633 BC001756 BC067763 AK312254 M83088 BC090856 DQ890618 DQ893786 CU676478 BT006961	-20204	+	AK292220 NM_032437 AK092219 TSC_hg19_v1_chr1_+_63989242 AK315850 AB058702 BC015814	-90090	+	NM_001172818 AK300100	9664	+	TSC_hg19_v1_chr1_+_64239705 AK308088 BC080541 NM_001083592 NM_005012 BC006374 M97675	160430	+	BC029895 NM_152489	590260	+	AK293298|PGM1|5236|phosphoglucomutase 1##NM_001172819|PGM1|5236|phosphoglucomutase 1##AK298505|PGM1|5236|phosphoglucomutase 1##AK294186|PGM1|5236|phosphoglucomutase 1##BC019920|PGM1|5236|phosphoglucomutase 1##NM_002633|PGM1|5236|phosphoglucomutase 1##BC001756|PGM1|5236|phosphoglucomutase 1##BC067763|PGM1|5236|phosphoglucomutase 1##AK312254|PGM1|5236|phosphoglucomutase 1##M83088|PGM1|5236|phosphoglucomutase 1##BC090856|PGM1|5236|phosphoglucomutase 1##DQ890618|PGM1|5236|phosphoglucomutase 1##DQ893786|PGM1|5236|phosphoglucomutase 1##BT006961|PGM1|5236|phosphoglucomutase 1##AK292220|EFCAB7|84455|EF-hand calcium binding domain 7##NM_032437|EFCAB7|84455|EF-hand calcium binding domain 7##AK092219|EFCAB7|84455|EF-hand calcium binding domain 7##AK315850|EFCAB7|84455|EF-hand calcium binding domain 7##AB058702|EFCAB7|84455|EF-hand calcium binding domain 7##BC015814|EFCAB7|84455|EF-hand calcium binding domain 7##NM_001172818|PGM1|5236|phosphoglucomutase 1##AK300100|PGM1|5236|phosphoglucomutase 1##AK308088|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC080541|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_001083592|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##NM_005012|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC006374|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##M97675|ROR1|4919|receptor tyrosine kinase-like orphan receptor 1##BC029895|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)##NM_152489|UBE2U|148581|ubiquitin-conjugating enzyme E2U (putative)	0.0	0.0	
chr19	3065661	3065813	reg1008113.p1	4.289	+	TSC_hg19_v1_chr19_-_3062919 AB527754 HQ258149 BC113735 BC113737 NM_198969 AK094591	-2730	-	X73357 TSC_hg19_v1_chr19_-_3062347 U04241 AF072902 AK314713 NM_001130 NM_198970	-3455	-	X73358 TSC_hg19_v1_chr19_-_3061344	-4440	-	TSC_hg19_v1_chr19_+_3094359 BC089041 NM_002067	28621	+	TSC_hg19_v1_chr19_+_3094528 BC096225 BC096226 BC096227 AB463701 AF011497 AF493900 CR457004 AB209435	28854	+	TSC_hg19_v1_chr19_+_3122331 BC111027 BC001528	56656	+	HQ258149|AES|166|amino-terminal enhancer of split##BC113735|AES|166|amino-terminal enhancer of split##BC113737|AES|166|amino-terminal enhancer of split##NM_198969|AES|166|amino-terminal enhancer of split##AK094591|AES|166|amino-terminal enhancer of split##X73357|AES|166|amino-terminal enhancer of split##U04241|AES|166|amino-terminal enhancer of split##AF072902|AES|166|amino-terminal enhancer of split##AK314713|AES|166|amino-terminal enhancer of split##NM_001130|AES|166|amino-terminal enhancer of split##NM_198970|AES|166|amino-terminal enhancer of split##X73358|AES|166|amino-terminal enhancer of split##BC089041|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##NM_002067|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC096225|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC096226|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC096227|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##AF011497|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##AF493900|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##CR457004|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##AB209435|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##BC001528|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	0.970522	0.0	denovo_WM_7:-71:0.852
chr3	120136135	120136290	reg1012851.p1	4.289	+	TSC_hg19_v1_chr3_-_120068162 AB528173 AM393236 BC013757 NM_001099678	-68071	-	NM_001168271 NM_153002	-173071	-	TSC_hg19_v1_chr3_+_119813618 BC035247	-322542	+	TSC_hg19_v1_chr3_-_120169846 AB527652 D89937 BC000055 U06863 AK300356 AK289388 AK291138 AK311050 AK300436 BX647421 AK312261 NM_007085	33625	-	NM_001168331 NM_004547 BC000855 BC146885 BC146887 BC146927 BC146932 TSC_hg19_v1_chr3_+_120315168	178935	+	TSC_hg19_v1_chr3_+_120315182 BC070285 AF044957 DQ891096 DQ894273 DQ894278 BC034579	178980	+	AM393236|LRRC58|116064|leucine rich repeat containing 58##BC013757|LRRC58|116064|leucine rich repeat containing 58##NM_001099678|LRRC58|116064|leucine rich repeat containing 58##NM_001168271|GPR156|165829|G protein-coupled receptor 156##NM_153002|GPR156|165829|G protein-coupled receptor 156##BC000055|FSTL1|11167|follistatin-like 1##U06863|FSTL1|11167|follistatin-like 1##AK300356|FSTL1|11167|follistatin-like 1##AK289388|FSTL1|11167|follistatin-like 1##AK291138|FSTL1|11167|follistatin-like 1##AK311050|FSTL1|11167|follistatin-like 1##AK300436|FSTL1|11167|follistatin-like 1##BX647421|FSTL1|11167|follistatin-like 1##AK312261|FSTL1|11167|follistatin-like 1##NM_007085|FSTL1|11167|follistatin-like 1##NM_001168331|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##NM_004547|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC000855|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC146885|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC146887|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC146927|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC146932|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC070285|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##AF044957|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##DQ891096|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##DQ894273|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##DQ894278|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa##BC034579|NDUFB4|4710|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa	0.011119	0.489248	CTCF.p2:-6:0.489
chr4	113201426	113201606	reg1000993.p3	4.289	+	TSC_hg19_v1_chr4_+_113152928 NM_001128426 NM_018569 AK310787 BX647702 AL136628 BC009485 AK315299 AB463522 AM392774 AM393046 AM393154 AM393604 AM393708 EU831660 EU831743	-48432	+	BC022534 NM_152400 TSC_hg19_v1_chr4_+_113066573 AK096689	-134902	+	NM_001204397 NM_001204398 NM_001204399 NM_153426 NM_153427	-1638238	-	TSC_hg19_v1_chr4_-_113207032 BC014259 BC008294 AK292900 AB097011 AB097038 NM_052864	5485	-	NM_001102406 NM_025144 TSC_hg19_v1_chr4_+_113218524 AK026323 AK304708 AK097246 BC028117 AK303489 BX648798 BC060780	17011	+	BC036847 NM_024019 TSC_hg19_v1_chr4_-_113437337	235816	-	NM_001128426|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##NM_018569|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK310787|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BX647702|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AL136628|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC009485|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AK315299|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM392774|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393046|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393154|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393604|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##AM393708|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831660|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##EU831743|AP1AR|55435|adaptor-related protein complex 1 associated regulatory protein##BC022534|C4orf32|132720|chromosome 4 open reading frame 32##NM_152400|C4orf32|132720|chromosome 4 open reading frame 32##AK096689|C4orf32|132720|chromosome 4 open reading frame 32##NM_001204397|PITX2|5308|paired-like homeodomain 2##NM_001204398|PITX2|5308|paired-like homeodomain 2##NM_001204399|PITX2|5308|paired-like homeodomain 2##NM_153426|PITX2|5308|paired-like homeodomain 2##NM_153427|PITX2|5308|paired-like homeodomain 2##BC014259|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##BC008294|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AK292900|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097011|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##AB097038|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_052864|TIFA|92610|TRAF-interacting protein with forkhead-associated domain##NM_001102406|ALPK1|80216|alpha-kinase 1##NM_025144|ALPK1|80216|alpha-kinase 1##AK026323|ALPK1|80216|alpha-kinase 1##AK304708|ALPK1|80216|alpha-kinase 1##AK097246|ALPK1|80216|alpha-kinase 1##BC028117|ALPK1|80216|alpha-kinase 1##AK303489|ALPK1|80216|alpha-kinase 1##BX648798|ALPK1|80216|alpha-kinase 1##BC060780|ALPK1|80216|alpha-kinase 1##BC036847|NEUROG2|63973|neurogenin 2##NM_024019|NEUROG2|63973|neurogenin 2	1.29591	0.0	denovo_WM_7:-68:0.249
chr10	119302391	119302540	reg1010498.p2	4.288	+	AF301598 NM_001165924 NM_004098	-510	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-549	-	CU688476 TSC_hg19_v1_chr10_-_119134939 BC012186 BC028375 NM_173791 AK091746 AX747159 BC033019	-167584	-	TSC_hg19_v1_chr10_+_119302713 AB463605	278	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	503579	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	503965	+	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC012186|PDZD8|118987|PDZ domain containing 8##BC028375|PDZD8|118987|PDZ domain containing 8##NM_173791|PDZD8|118987|PDZ domain containing 8##AK091746|PDZD8|118987|PDZ domain containing 8##BC033019|PDZD8|118987|PDZ domain containing 8##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)	2.941393	0.0	denovo_WM_7:3:0.407	denovo_WM_7:-13:0.299	denovo_WM_7:-16:0.284	denovo_WM_7:-31:0.210	denovo_WM_7:-32:0.243	denovo_WM_7:-33:0.284
chr11	45951712	45951892	reg1014147.p1	4.288	+	TSC_hg19_v1_chr11_+_45944226 BC037291	-7586	+	AK055829 AK096021 NM_152312	-8619	+	TSC_hg19_v1_chr11_-_45939595 AF118240 NM_004813 NM_057174	-12182	-	TSC_hg19_v1_chr11_-_46142986 AK023258 NM_001101802 NM_016621	191195	-	TSC_hg19_v1_chr11_+_46299212 AK314072 NM_052854	347403	+	BC014097 TSC_hg19_v1_chr11_+_46299557 BC015781 AB063321	347758	+	BC037291|GYLTL1B|120071|glycosyltransferase-like 1B##AK055829|GYLTL1B|120071|glycosyltransferase-like 1B##AK096021|GYLTL1B|120071|glycosyltransferase-like 1B##NM_152312|GYLTL1B|120071|glycosyltransferase-like 1B##AF118240|PEX16|9409|peroxisomal biogenesis factor 16##NM_004813|PEX16|9409|peroxisomal biogenesis factor 16##NM_057174|PEX16|9409|peroxisomal biogenesis factor 16##AK023258|PHF21A|51317|PHD finger protein 21A##NM_001101802|PHF21A|51317|PHD finger protein 21A##NM_016621|PHF21A|51317|PHD finger protein 21A##AK314072|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##NM_052854|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC014097|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##BC015781|CREB3L1|90993|cAMP responsive element binding protein 3-like 1##AB063321|CREB3L1|90993|cAMP responsive element binding protein 3-like 1	0.0	0.0	
chr12	4508260	4508351	reg1012999.p2	4.288	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	-19505	-	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	-77914	+	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	-125261	+	BC121097 BC121098 NM_020996 X63454	46474	-	TSC_hg19_v1_chr12_-_4647633 AJ272205 BC016908	139314	-	AL834377 NM_020374 TSC_hg19_v1_chr12_-_4647648	139341	-	AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##BC121097|FGF6|2251|fibroblast growth factor 6##BC121098|FGF6|2251|fibroblast growth factor 6##NM_020996|FGF6|2251|fibroblast growth factor 6##X63454|FGF6|2251|fibroblast growth factor 6##AJ272205|C12orf4|57102|chromosome 12 open reading frame 4##BC016908|C12orf4|57102|chromosome 12 open reading frame 4##AL834377|C12orf4|57102|chromosome 12 open reading frame 4##NM_020374|C12orf4|57102|chromosome 12 open reading frame 4	0.99741	0.0	
chr5	86524945	86525059	reg1006677.p2	4.288	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-611185	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-611244	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2844338	-	TSC_hg19_v1_chr5_+_86563706 CR749722	38683	+	TSC_hg19_v1_chr5_+_86563831 BC131816	38824	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	39064	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	2.930471	0.0	
chr8	130897899	130898079	reg1006085.p1	4.288	+	AB042405 NM_031415	-98856	-	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-2091206	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-2149499	+	BC003599 TSC_hg19_v1_chr8_-_130951934	53926	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	54017	-	BC016345 TSC_hg19_v1_chr8_-_131028667	130670	-	AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B	0.980392	0.0	
chr9	132824214	132824302	reg1010226.p1	4.288	+	TSC_hg19_v1_chr9_+_132816199 AK026244 AK225456 BC030147 AF376725 AX776003 BC110518 AK293092 AB385490 AB046844	-8042	+	TSC_hg19_v1_chr9_+_132816196 BC143655	-8067	+	BC039728 NM_001136557 NM_001136558 NM_020960	-8274	+	AK024651 TSC_hg19_v1_chr9_+_132897386	73106	+	TSC_hg19_v1_chr9_+_132934685 BC004856 NM_014286 AF134479 AF186409 X84048 AB463656	110555	+	NM_001128826	138613	+	AK026244|GPR107|57720|G protein-coupled receptor 107##AK225456|GPR107|57720|G protein-coupled receptor 107##BC030147|GPR107|57720|G protein-coupled receptor 107##AF376725|GPR107|57720|G protein-coupled receptor 107##BC110518|GPR107|57720|G protein-coupled receptor 107##AK293092|GPR107|57720|G protein-coupled receptor 107##AB046844|GPR107|57720|G protein-coupled receptor 107##BC143655|GPR107|57720|G protein-coupled receptor 107##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107##AK024651|GPR107|57720|G protein-coupled receptor 107##BC004856|NCS1|23413|neuronal calcium sensor 1##NM_014286|NCS1|23413|neuronal calcium sensor 1##AF134479|NCS1|23413|neuronal calcium sensor 1##AF186409|NCS1|23413|neuronal calcium sensor 1##X84048|NCS1|23413|neuronal calcium sensor 1##NM_001128826|NCS1|23413|neuronal calcium sensor 1	0.0	0.0	
chr12	113513262	113513416	reg1011456.p1	4.287	+	NM_004416 BC048216	-17649	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	-96999	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-136999	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	60073	-	AF086713 AB208935 AK294350 NM_001193520 NM_004658	60692	-	AK308987 NM_001144872	74265	+	NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AF086713|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AB208935|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK294350|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193520|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_004658|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001144872|CCDC42B|387885|coiled-coil domain containing 42B	0.0	0.0	
chr12	30960528	30960617	reg1012038.p1	4.287	+	AY074490 AY074491 NM_001002259 NM_001206856 NM_023925 NM_032156	-53125	-	TSC_hg19_v1_chr12_-_30848807 NM_006390	-111706	-	U77494 TSC_hg19_v1_chr12_-_30848794	-111802	-	TSC_hg19_v1_chr12_+_31079362 BC084571	118789	+	TSC_hg19_v1_chr12_+_31079681 AK293947	119088	+	AK300920 NM_001080509 TSC_hg19_v1_chr12_+_31079866 BC146917 BC146922	119292	+	AY074490|CAPRIN2|65981|caprin family member 2##AY074491|CAPRIN2|65981|caprin family member 2##NM_001002259|CAPRIN2|65981|caprin family member 2##NM_001206856|CAPRIN2|65981|caprin family member 2##NM_023925|CAPRIN2|65981|caprin family member 2##NM_032156|CAPRIN2|65981|caprin family member 2##NM_006390|IPO8|10526|importin 8##U77494|IPO8|10526|importin 8##AK293947|TSPAN11|441631|tetraspanin 11##AK300920|TSPAN11|441631|tetraspanin 11##NM_001080509|TSPAN11|441631|tetraspanin 11##BC146917|TSPAN11|441631|tetraspanin 11##BC146922|TSPAN11|441631|tetraspanin 11	0.05246	0.733189	CTCF.p2:-1:0.733
chr3	35898686	35898839	reg1011401.p2	4.287	+	BC017805 NM_198399 BC066651 BC036548	-176303	+	AK055064 NM_001025068 NM_001025069 AK289868 AF112220 AK289649 AK294484	-177566	+	BC051828 NM_016300	-214914	+	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	523290	+	NM_033403	882589	-	TSC_hg19_v1_chr3_-_36986546 NM_014831	1087808	-	BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK055064|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025068|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025069|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289868|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AF112220|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289649|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK294484|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC051828|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_016300|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##NM_033403|DCLK3|85443|doublecortin-like kinase 3##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1	0.0	0.0	
chr7	106807589	106807671	reg1013702.p2	4.287	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-122427	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-301701	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-301856	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	1809	+	NM_005295 AK122621 AK307393	302872	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	396780	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	0.999929	0.0	
chr1	156115907	156115973	reg1014346.p1	4.286	+	TSC_hg19_v1_chr1_+_156084585 AY528714 AB527090 EU831758 EU831836 EU832167 EU832261 CU677029 CU678414 AY847595 AY847596 AY847597	-31296	+	TSC_hg19_v1_chr1_+_156084568 M13451	-31370	+	TSC_hg19_v1_chr1_+_156084553 BC003162 AK130179	-31389	+	NM_001193301 AY358531	3831	+	NM_001193300 NM_022367 AK296693 TSC_hg19_v1_chr1_+_156123375 AK091127 AK290353 AX746794 NM_001193302 AK315547 BX640891 BC020974	7414	+	TSC_hg19_v1_chr1_+_156163725 NM_014655	47798	+	AY528714|LMNA|4000|lamin A/C##EU831758|LMNA|4000|lamin A/C##EU831836|LMNA|4000|lamin A/C##EU832167|LMNA|4000|lamin A/C##EU832261|LMNA|4000|lamin A/C##AY847595|LMNA|4000|lamin A/C##AY847596|LMNA|4000|lamin A/C##AY847597|LMNA|4000|lamin A/C##M13451|LMNA|4000|lamin A/C##BC003162|LMNA|4000|lamin A/C##AK130179|LMNA|4000|lamin A/C##NM_001193301|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AY358531|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193300|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_022367|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK296693|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK091127|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK290353|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193302|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK315547|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BX640891|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BC020974|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_014655|SLC25A44|9673|solute carrier family 25, member 44	0.0	0.010447	
chr13	70111748	70111895	reg1018019.p1	4.286	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	-2307317	-	AK289924 NM_022843	-8122167	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-8122568	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	570720	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	2328438	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	2328942	-	BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)	0.886485	0.92754	CTCF.p2:-28:0.928	denovo_WM_7:-67:0.234	denovo_WM_7:-69:0.581
chr17	5130907	5131018	reg1014563.p2	4.286	+	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-35582	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-35789	-	AY143550 NM_004505 X63546 X63547	-99276	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	7139	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	54704	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	191963	-	AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##AY143550|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##NM_004505|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63546|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##X63547|USP6|9098|ubiquitin specific peptidase 6 (Tre-2 oncogene)##DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa	0.0	0.0	
chr19	49313991	49314148	reg1003259.p1	4.286	+	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-54651	+	D87935 D87936 D87937 NM_000148	-55423	-	AB195682 BC034769 NM_182575 AK301750	-63974	-	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	179	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	25705	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	25854	-	AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##AB195682|IZUMO1|284359|izumo sperm-egg fusion 1##BC034769|IZUMO1|284359|izumo sperm-egg fusion 1##NM_182575|IZUMO1|284359|izumo sperm-egg fusion 1##AK301750|IZUMO1|284359|izumo sperm-egg fusion 1##AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14	0.997959	0.0	denovo_WM_7:-66:0.298	denovo_WM_7:-67:0.298	denovo_WM_7:-68:0.298
chr1	9730247	9730354	reg1010303.p1	4.286	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-18496	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-81344	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-130664	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	153595	-	TSC_hg19_v1_chr1_-_9884023 AK304813	153721	-	TSC_hg19_v1_chr1_-_9884024 BC033902	153744	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	0.999559	0.0	
chr3	56807830	56807906	reg1009614.p2	4.286	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-90661	-	BC029354 NM_015224	-109795	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-216622	+	AK293864 AB209661 NM_001128616	1801	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	28043	-	AY221117 NM_181727 BC126274 BC136498	286635	+	BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12	0.995118	0.0	denovo_WM_7:-5:0.526	denovo_WM_7:-6:0.469
chr5	18745081	18745240	reg1015698.p1	4.286	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-1527320	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-1527548	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-1808775	-	AK295087 BC031051 NM_001167667 NM_004934	1243162	-	TSC_hg19_v1_chr5_+_21459621 AK290693	2714449	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	2714488	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.143088	0.0	
chr6	35678202	35678304	reg1012542.p1	4.286	+	TSC_hg19_v1_chr6_-_35656693 BC111050 AK222807 AK302704 AK303356 AK312422 BX647390 NM_001145776 AF194172 U71321 NM_001145777 NM_004117	-21547	-	TSC_hg19_v1_chr6_-_35656616 HM245391 AB209893	-21633	-	CU689498 EU446712 BC065261 NM_003322 BC032714 BC001761 BC021268 AB593124 AB593123 DQ426893	-197579	-	BC042605 NM_001145775	18106	-	AK058119 BC033033 NM_145028	26605	+	AY358823 NM_207409	66138	+	BC111050|FKBP5|2289|FK506 binding protein 5##AK222807|FKBP5|2289|FK506 binding protein 5##AK302704|FKBP5|2289|FK506 binding protein 5##AK303356|FKBP5|2289|FK506 binding protein 5##AK312422|FKBP5|2289|FK506 binding protein 5##BX647390|FKBP5|2289|FK506 binding protein 5##NM_001145776|FKBP5|2289|FK506 binding protein 5##AF194172|FKBP5|2289|FK506 binding protein 5##U71321|FKBP5|2289|FK506 binding protein 5##NM_001145777|FKBP5|2289|FK506 binding protein 5##NM_004117|FKBP5|2289|FK506 binding protein 5##HM245391|FKBP5|2289|FK506 binding protein 5##AB209893|FKBP5|2289|FK506 binding protein 5##EU446712|TULP1|7287|tubby like protein 1##BC065261|TULP1|7287|tubby like protein 1##NM_003322|TULP1|7287|tubby like protein 1##BC032714|TULP1|7287|tubby like protein 1##AB593124|TULP1|7287|tubby like protein 1##AB593123|TULP1|7287|tubby like protein 1##DQ426893|TULP1|7287|tubby like protein 1##BC042605|FKBP5|2289|FK506 binding protein 5##NM_001145775|FKBP5|2289|FK506 binding protein 5##AK058119|C6orf81|221481|chromosome 6 open reading frame 81##BC033033|C6orf81|221481|chromosome 6 open reading frame 81##NM_145028|C6orf81|221481|chromosome 6 open reading frame 81##AY358823|C6orf126|389383|chromosome 6 open reading frame 126##NM_207409|C6orf126|389383|chromosome 6 open reading frame 126	0.134481	0.0	
chr8	62381383	62381560	reg1009799.p2	4.286	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	-180921	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-790069	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-790183	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	220875	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	245547	-	TSC_hg19_v1_chr8_-_62627152 BC015518 BC025236 AK298577	245667	-	NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase##BC015518|ASPH|444|aspartate beta-hydroxylase##BC025236|ASPH|444|aspartate beta-hydroxylase##AK298577|ASPH|444|aspartate beta-hydroxylase	0.0	0.062336	
chr9	131790859	131790968	reg1010920.p1	4.286	+	EU832345 EU832430 TSC_hg19_v1_chr9_-_131790591 AF257319 AF258589 AB058751 BC014635 NM_020145	-381	-	TSC_hg19_v1_chr9_+_131709992 BX537774 D79991	-80902	+	TSC_hg19_v1_chr9_+_131709977 NM_015354	-80933	+	TSC_hg19_v1_chr9_+_131798900 AK074127 AK075421 AK301241	8017	+	AK303036 BC009114 NM_032809	8319	+	TSC_hg19_v1_chr9_+_131843403 AY189675 AK290713 NM_001135917 NM_020438 BC067858 AK293627 BC033686 BC022553 BC009493 BC040152	52482	+	EU832345|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##EU832430|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF257319|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AF258589|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##AB058751|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##BC014635|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##NM_020145|SH3GLB2|56904|SH3-domain GRB2-like endophilin B2##BX537774|NUP188|23511|nucleoporin 188kDa##D79991|NUP188|23511|nucleoporin 188kDa##NM_015354|NUP188|23511|nucleoporin 188kDa##AK074127|FAM73B|84895|family with sequence similarity 73, member B##AK075421|FAM73B|84895|family with sequence similarity 73, member B##AK301241|FAM73B|84895|family with sequence similarity 73, member B##AK303036|FAM73B|84895|family with sequence similarity 73, member B##BC009114|FAM73B|84895|family with sequence similarity 73, member B##NM_032809|FAM73B|84895|family with sequence similarity 73, member B##AY189675|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK290713|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_001135917|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##NM_020438|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC067858|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##AK293627|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC033686|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC022553|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC009493|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1##BC040152|DOLPP1|57171|dolichyl pyrophosphate phosphatase 1	0.101541	0.0	
chr12	90115598	90115729	reg1013443.p1	4.285	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-12118	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-12976	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-65812	-	BC026075 BC024183 BC027600 BC034491 NM_152638	1233288	-	U59111 TSC_hg19_v1_chr12_-_91398750	1283084	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	1283116	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.095233	0.0	
chr5	138927109	138927210	reg1004563.p2	4.285	+	NM_198282 TSC_hg19_v1_chr5_-_138862344	-64816	-	TSC_hg19_v1_chr5_-_138862306 AK095896 AX775913 BC047779 AK290661	-64887	-	AK304726 BC146912 BC146913 DQ462572 NM_001077693 EU025066 TSC_hg19_v1_chr5_-_138842329	-84849	-	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	13614	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	13766	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	14189	+	NM_198282|TMEM173|340061|transmembrane protein 173##AK095896|TMEM173|340061|transmembrane protein 173##AX775913|TMEM173|340061|transmembrane protein 173##BC047779|TMEM173|340061|transmembrane protein 173##AK290661|TMEM173|340061|transmembrane protein 173##BC146912|ECSCR|641700|endothelial cell-specific chemotaxis regulator##BC146913|ECSCR|641700|endothelial cell-specific chemotaxis regulator##DQ462572|ECSCR|641700|endothelial cell-specific chemotaxis regulator##NM_001077693|ECSCR|641700|endothelial cell-specific chemotaxis regulator##EU025066|ECSCR|641700|endothelial cell-specific chemotaxis regulator##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2	0.943091	0.0	denovo_WM_7:-52:0.517	denovo_WM_7:-54:0.290
chr6	34354295	34354385	reg1012426.p2	4.285	+	TSC_hg19_v1_chr6_-_34216832 BC009526 NM_001008703 NM_001008704 NM_178508	-137477	-	BC047919 TSC_hg19_v1_chr6_-_34216784 BC023627 AK290164	-137547	-	AK311680 TSC_hg19_v1_chr6_+_34216344	-137990	+	TSC_hg19_v1_chr6_-_34360182 AB463951 BT019984 BT019985 DQ893118 DQ896391 AF062529 AF062530	5861	-	TSC_hg19_v1_chr6_-_34360360 AK313440	5995	-	TSC_hg19_v1_chr6_-_34360425 BC007727	6080	-	BC009526|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008703|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008704|C6orf1|221491|chromosome 6 open reading frame 1##NM_178508|C6orf1|221491|chromosome 6 open reading frame 1##BC047919|C6orf1|221491|chromosome 6 open reading frame 1##BC023627|C6orf1|221491|chromosome 6 open reading frame 1##AK290164|C6orf1|221491|chromosome 6 open reading frame 1##BT019984|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BT019985|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ893118|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ896391|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062529|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062530|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AK313440|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BC007727|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3	0.0	0.0	
chr1	205718396	205718531	reg1013873.p2	4.284	+	AK313479 TSC_hg19_v1_chr1_-_205649636 AK290364 FJ805258 FJ805259 FJ805260 FJ805261 NM_033102 EF632109	-68782	-	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	-68895	-	NM_001973 NM_021795	-116464	-	TSC_hg19_v1_chr1_-_205719084 CR457339 AB528490 DQ891218 DQ894401	626	-	AY823399 AF212045 TSC_hg19_v1_chr1_-_205719151	679	-	TSC_hg19_v1_chr1_-_205719181 AK025133 AK225228 AJ012584	729	-	AK313479|SLC45A3|85414|solute carrier family 45, member 3##AK290364|SLC45A3|85414|solute carrier family 45, member 3##NM_033102|SLC45A3|85414|solute carrier family 45, member 3##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3##NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##CR457339|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##DQ891218|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##DQ894401|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AY823399|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AK025133|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AK225228|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##AJ012584|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1	0.0	0.0	
chr2	153023304	153023435	reg1007572.p2	4.284	+	TSC_hg19_v1_chr2_-_152955813 AK291378	-67558	-	AF038852 AB302276 BC075049 NM_000726 NM_001145798 U95020	-67822	-	AK294398 AK316045 TSC_hg19_v1_chr2_-_152955250 NM_001005746	-68139	-	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	8981	-	TSC_hg19_v1_chr2_+_153191687 NM_052905	168301	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	168604	+	AK291378|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AF038852|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AB302276|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##BC075049|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##NM_000726|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##NM_001145798|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##U95020|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AK294398|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AK316045|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##NM_001005746|CACNB4|785|calcium channel, voltage-dependent, beta 4 subunit##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_052905|FMNL2|114793|formin-like 2##BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2	0.143856	0.0	
chr22	42323341	42323521	reg1002041.p2	4.284	+	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-632	-	NM_001207020	-12761	-	TSC_hg19_v1_chr22_+_42229269 CU013184 CU013472 AB463291	-94160	+	EU035297 NM_001110215	12791	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	19692	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	49477	+	AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CU013184|SREBF2|6721|sterol regulatory element binding transcription factor 2##CU013472|SREBF2|6721|sterol regulatory element binding transcription factor 2##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3	0.99936	0.0	
chr6	45650197	45650377	reg1001866.p2	4.284	+	TSC_hg19_v1_chr6_+_45390379 L40992	-259875	+	TSC_hg19_v1_chr6_+_45390325 BC108919 BC108920	-259982	+	TSC_hg19_v1_chr6_+_45389825 NM_004348	-260422	+	DQ892643 DQ895881 CU690236 AF176920 AK314416 AK075163 TSC_hg19_v1_chr6_-_45983598 AK075144 AF216941 AK222544 BC035968 DQ679794 AK223130 NM_016929	333190	-	AY032602 AK097048 NM_001114086	397744	-	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	447427	+	L40992|RUNX2|860|runt-related transcription factor 2##BC108919|RUNX2|860|runt-related transcription factor 2##BC108920|RUNX2|860|runt-related transcription factor 2##NM_004348|RUNX2|860|runt-related transcription factor 2##DQ892643|CLIC5|53405|chloride intracellular channel 5##DQ895881|CLIC5|53405|chloride intracellular channel 5##AF176920|CLIC5|53405|chloride intracellular channel 5##AK314416|CLIC5|53405|chloride intracellular channel 5##AK075163|CLIC5|53405|chloride intracellular channel 5##AK075144|CLIC5|53405|chloride intracellular channel 5##AF216941|CLIC5|53405|chloride intracellular channel 5##AK222544|CLIC5|53405|chloride intracellular channel 5##BC035968|CLIC5|53405|chloride intracellular channel 5##DQ679794|CLIC5|53405|chloride intracellular channel 5##AK223130|CLIC5|53405|chloride intracellular channel 5##NM_016929|CLIC5|53405|chloride intracellular channel 5##AY032602|CLIC5|53405|chloride intracellular channel 5##AK097048|CLIC5|53405|chloride intracellular channel 5##NM_001114086|CLIC5|53405|chloride intracellular channel 5##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)	0.0	0.0	
chr7	117170547	117170655	reg1013479.p2	4.284	+	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	-50563	+	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	-103056	-	BC078170 AK056742 NM_003391 X07876	-207266	-	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	342880	-	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	342942	-	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	653570	+	M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit	1.086781	0.0	denovo_WM_7:-31:0.781
chr9	80442453	80442584	reg1003001.p2	4.284	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-179287	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-474170	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-650010	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	203666	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	408512	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	469540	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.0	0.0	
chr10	11620988	11621109	reg1014375.p1	4.283	+	NM_001080491	-46775	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-413556	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-413602	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	32588	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	163350	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	244310	+	NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47	0.0	0.0	
chr1	210837224	210837332	reg1016153.p1	4.283	+	NM_001170580 BC051191	-334637	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-335013	+	NM_001122834 NM_001170564 AK297193	-335682	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	470107	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	595430	+	TSC_hg19_v1_chr1_+_211432726 AK131312	595449	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.0	0.0	
chr1	53712281	53712457	reg1002534.p2	4.283	+	DQ891289 DQ894473 AB528424 TSC_hg19_v1_chr1_-_53704191 AF035940 BC018211 AK297895 AF067173 AK312113 NM_002370	-8168	-	TSC_hg19_v1_chr1_-_53686277 AK000587 BC010908 NM_017887	-26095	-	TSC_hg19_v1_chr1_+_53662495 BC002445 BC005172 AK312687 M58581	-49873	+	Z75190 D50678 BC051836 TSC_hg19_v1_chr1_-_53793738	81293	-	TSC_hg19_v1_chr1_-_53793743 NM_001018054 NM_004631 NM_017522 NM_033300	81412	-	AK057273 NM_033067 AJ291671	212738	+	DQ891289|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##DQ894473|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AF035940|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##BC018211|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AK297895|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AF067173|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AK312113|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##NM_002370|MAGOH|4116|mago-nashi homolog, proliferation-associated (Drosophila)##AK000587|C1orf123|54987|chromosome 1 open reading frame 123##BC010908|C1orf123|54987|chromosome 1 open reading frame 123##NM_017887|C1orf123|54987|chromosome 1 open reading frame 123##BC002445|CPT2|1376|carnitine palmitoyltransferase 2##BC005172|CPT2|1376|carnitine palmitoyltransferase 2##AK312687|CPT2|1376|carnitine palmitoyltransferase 2##M58581|CPT2|1376|carnitine palmitoyltransferase 2##Z75190|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##D50678|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##BC051836|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_001018054|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_004631|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_017522|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##NM_033300|LRP8|7804|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor##AK057273|DMRTB1|63948|DMRT-like family B with proline-rich C-terminal, 1##NM_033067|DMRTB1|63948|DMRT-like family B with proline-rich C-terminal, 1##AJ291671|DMRTB1|63948|DMRT-like family B with proline-rich C-terminal, 1	0.0	0.0	
chr1	97624996	97625176	reg1009235.p2	4.283	+	BC030757 TSC_hg19_v1_chr1_+_97260652	-364503	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-437802	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-479890	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	761403	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	761473	-	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	761520	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase	0.0	0.0	
chr20	46041438	46041598	reg1011472.p2	4.283	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-56030	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-64871	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-113949	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	89104	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	89166	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	373234	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.067962	0.0	
chr5	17282359	17282485	reg1011617.p1	4.283	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-64582	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-64810	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-346037	-	AK295087 BC031051 NM_001167667 NM_004934	2705900	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4177187	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4177226	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.0	0.0	
chr9	80635203	80635308	reg1004158.p1	4.283	+	BC027886 TSC_hg19_v1_chr9_-_80263240 AK312460 NM_004297	-372024	-	AK027023 TSC_hg19_v1_chr9_+_79968352	-666907	+	TSC_hg19_v1_chr9_+_79792474 AB054005	-842747	+	AB463062 AF011496 AF329284 AF493896 AM392842 AM393393 AM393764 CU691228 L76256 BC075097 BC075096 U40038 BC057777 BC067850 BC069520 NM_002072	10929	-	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	215775	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	276803	+	BC027886|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK312460|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##NM_004297|GNA14|9630|guanine nucleotide binding protein (G protein), alpha 14##AK027023|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AB054005|VPS13A|23230|vacuolar protein sorting 13 homolog A (S. cerevisiae)##AF011496|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF329284|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AF493896|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM392842|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393393|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##AM393764|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##L76256|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075097|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC075096|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##U40038|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC057777|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC067850|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##BC069520|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_002072|GNAQ|2776|guanine nucleotide binding protein (G protein), q polypeptide##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1	0.0	0.0	
chr1	145620442	145620546	reg1012942.p1	4.282	+	TSC_hg19_v1_chr1_+_145611124 AF419857 NM_014455 AK290749 AF542552 BC054049 BC064903 CU691082 EU446627 EU446791 GQ129333 GQ129334	-9314	+	TSC_hg19_v1_chr1_-_145610937 BC004424	-9559	-	TSC_hg19_v1_chr1_-_145610895 U93867 BC002586 NM_006468	-9608	-	AL079314 TSC_hg19_v1_chr1_+_145663283	42725	+	AF060981 BC014465 NM_007053 AK128370	95093	-	NM_001201325 NM_001201326 NM_002614 TSC_hg19_v1_chr1_+_145727703	107190	+	AF419857|RNF115|27246|ring finger protein 115##NM_014455|RNF115|27246|ring finger protein 115##AK290749|RNF115|27246|ring finger protein 115##AF542552|RNF115|27246|ring finger protein 115##BC054049|RNF115|27246|ring finger protein 115##BC064903|RNF115|27246|ring finger protein 115##EU446627|RNF115|27246|ring finger protein 115##EU446791|RNF115|27246|ring finger protein 115##GQ129333|RNF115|27246|ring finger protein 115##GQ129334|RNF115|27246|ring finger protein 115##BC004424|POLR3C|10623|polymerase (RNA) III (DNA directed) polypeptide C (62kD)##U93867|POLR3C|10623|polymerase (RNA) III (DNA directed) polypeptide C (62kD)##BC002586|POLR3C|10623|polymerase (RNA) III (DNA directed) polypeptide C (62kD)##NM_006468|POLR3C|10623|polymerase (RNA) III (DNA directed) polypeptide C (62kD)##AL079314|RNF115|27246|ring finger protein 115##AF060981|CD160|11126|CD160 molecule##BC014465|CD160|11126|CD160 molecule##NM_007053|CD160|11126|CD160 molecule##AK128370|CD160|11126|CD160 molecule##NM_001201325|PDZK1|5174|PDZ domain containing 1##NM_001201326|PDZK1|5174|PDZ domain containing 1##NM_002614|PDZK1|5174|PDZ domain containing 1	0.998036	0.0	denovo_WM_7:10:0.479	denovo_WM_7:11:0.427
chr20	11436548	11436692	reg1000609.p2	4.282	+	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	-782051	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	-782416	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-1020644	+	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	434829	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	461937	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	1553021	+	BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3	0.0	0.0	
chr2	155397003	155397126	reg1010284.p1	4.282	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-668620	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1061813	-	BC070140 TSC_hg19_v1_chr2_+_153575135 AF530059	-1821920	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	158125	+	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1789626	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1792099	-	NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC070140|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AF530059|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2	0.732974	0.0	denovo_WM_7:37:0.497
chr2	37763487	37763568	reg1012182.p2	4.282	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-191714	+	BC030706 BC012820 AB015982 NM_005813	-219334	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-304681	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	135252	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	135862	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	388905	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	0.957318	0.988953	CTCF.p2:-6:0.989	denovo_WM_7:-22:0.833
chr9	117379232	117379370	reg1010812.p2	4.282	+	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	-5532	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	-29194	+	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	-29263	+	NM_001199233	65067	-	AY434464 NM_001204344	175508	-	AB590753 AK291642 BC074940 BC074941 BC069435 AK313721 BC104462 BC104463 NM_005118 AF520785	189050	-	NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91##CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_001199233|LOC100505478|100505478|uncharacterized LOC100505478##AY434464|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_001204344|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AK291642|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC074940|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC074941|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC069435|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AK313721|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC104462|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##BC104463|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##NM_005118|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15##AF520785|TNFSF15|9966|tumor necrosis factor (ligand) superfamily, member 15	0.0	0.0	
chr1	105311372	105311552	reg1012601.p2	4.281	+	NM_004038 NM_001008219 NM_001008218 BC063129 BC070302 AK313275 BC092444 BC132985 BC132987 BC132997 BC144452 BC132995	-1018960	+	NM_001008221 AK292341	-1019184	+	AK292341 NM_001008221	-1072391	-	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	2287903	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	2371280	+	AB023193 TSC_hg19_v1_chr1_+_107683657	2372142	+	NM_004038|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008219|AMY1C|278|amylase, alpha 1C (salivary)##NM_001008218|AMY1B|277|amylase, alpha 1B (salivary)##BC063129|AMY1A|276|amylase, alpha 1A (salivary)##BC070302|AMY1A|276|amylase, alpha 1A (salivary)##AK313275|AMY1A|276|amylase, alpha 1A (salivary)##BC092444|AMY1A|276|amylase, alpha 1A (salivary)##BC132985|AMY1A|276|amylase, alpha 1A (salivary)##BC132987|AMY1A|276|amylase, alpha 1A (salivary)##BC132997|AMY1A|276|amylase, alpha 1A (salivary)##BC144452|AMY1A|276|amylase, alpha 1A (salivary)##BC132995|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AB023193|NTNG1|22854|netrin G1	0.0	0.0	
chr19	55787319	55787414	reg1008478.p1	4.281	+	TSC_hg19_v1_chr19_-_55770366 AB029038	-17010	-	TSC_hg19_v1_chr19_-_55769920 NM_014931	-17388	-	TSC_hg19_v1_chr19_-_55769905 BC094753	-17492	-	TSC_hg19_v1_chr19_-_55791440 AF187859	4068	-	TSC_hg19_v1_chr19_-_55791484 BC002373 AB020592 AF093420 AK130781 AK075293	4101	-	TSC_hg19_v1_chr19_-_55791492 AK130636 AK129755	4151	-	AB029038|PPP6R1|22870|protein phosphatase 6, regulatory subunit 1##NM_014931|PPP6R1|22870|protein phosphatase 6, regulatory subunit 1##BC094753|PPP6R1|22870|protein phosphatase 6, regulatory subunit 1##AF187859|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##BC002373|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AB020592|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AF093420|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK130781|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK075293|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK130636|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1##AK129755|HSPBP1|23640|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	0.990013	0.084582	denovo_WM_7:-37:0.243	denovo_WM_7:-38:0.243	denovo_WM_7:-39:0.243	denovo_WM_7:-40:0.243
chr2	188340338	188340483	reg1014521.p1	4.281	+	DQ280491 U17473 L76380 AK291630 AK292998 DQ280490 NM_005795	-27464	-	AK128006 BC031094 NM_182521	-626514	-	TSC_hg19_v1_chr2_+_187558788 AK091423 AK289737 AX746973 BC060872 NM_177454 AF361495 CU687488	-781634	+	J03225 AF021834 TSC_hg19_v1_chr2_-_188419163 AK313562 BC015514 BC014332	78700	-	TSC_hg19_v1_chr2_-_188419185 NM_001032281 NM_006287	78791	-	AK055718 NM_001252668 NM_001252669 NM_016315 TSC_hg19_v1_chr2_+_189156445	816015	+	DQ280491|CALCRL|10203|calcitonin receptor-like##U17473|CALCRL|10203|calcitonin receptor-like##L76380|CALCRL|10203|calcitonin receptor-like##AK291630|CALCRL|10203|calcitonin receptor-like##AK292998|CALCRL|10203|calcitonin receptor-like##NM_005795|CALCRL|10203|calcitonin receptor-like##AK128006|ZSWIM2|151112|zinc finger, SWIM-type containing 2##BC031094|ZSWIM2|151112|zinc finger, SWIM-type containing 2##NM_182521|ZSWIM2|151112|zinc finger, SWIM-type containing 2##AK091423|FAM171B|165215|family with sequence similarity 171, member B##AK289737|FAM171B|165215|family with sequence similarity 171, member B##BC060872|FAM171B|165215|family with sequence similarity 171, member B##NM_177454|FAM171B|165215|family with sequence similarity 171, member B##AF361495|FAM171B|165215|family with sequence similarity 171, member B##J03225|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AF021834|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AK313562|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC015514|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC014332|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_001032281|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_006287|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AK055718|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##NM_001252668|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##NM_001252669|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##NM_016315|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1	0.0	0.0	
chr3	52718171	52718318	reg1009999.p1	4.281	+	AY281068 AF177387 AF225870 AF225871 AF225872 BC115009 BC115010 BC115011 BC116450 BC129934 BC129935 NM_018165 NM_181042	-4511	-	AK095910 BC017996 NM_001124767 TSC_hg19_v1_chr3_+_52570620	-147618	+	BC047747 TSC_hg19_v1_chr3_-_52569042 AK023995 NM_022908	-149188	-	TSC_hg19_v1_chr3_-_52719930 AF197569 NM_018313	1525	-	AF191018 NM_014366 NM_206825 NM_206826 TSC_hg19_v1_chr3_+_52720047 AK315484 AK027514 AK297634 AK027516 BC001024 AB463711 CU674504 EU831969 EU832062	1777	+	BC119670 BC119671 AK027517 NM_152932 AY358579	19372	-	AY281068|PBRM1|55193|polybromo 1##AF177387|PBRM1|55193|polybromo 1##AF225870|PBRM1|55193|polybromo 1##AF225871|PBRM1|55193|polybromo 1##AF225872|PBRM1|55193|polybromo 1##BC115009|PBRM1|55193|polybromo 1##BC115010|PBRM1|55193|polybromo 1##BC115011|PBRM1|55193|polybromo 1##BC116450|PBRM1|55193|polybromo 1##BC129934|PBRM1|55193|polybromo 1##BC129935|PBRM1|55193|polybromo 1##NM_018165|PBRM1|55193|polybromo 1##NM_181042|PBRM1|55193|polybromo 1##AK095910|C3orf78|440957|chromosome 3 open reading frame 78##BC017996|C3orf78|440957|chromosome 3 open reading frame 78##NM_001124767|C3orf78|440957|chromosome 3 open reading frame 78##BC047747|NT5DC2|64943|5'-nucleotidase domain containing 2##AK023995|NT5DC2|64943|5'-nucleotidase domain containing 2##NM_022908|NT5DC2|64943|5'-nucleotidase domain containing 2##AF197569|PBRM1|55193|polybromo 1##NM_018313|PBRM1|55193|polybromo 1##AF191018|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_014366|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206825|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206826|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK315484|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027514|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027516|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC001024|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU831969|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU832062|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC119670|GLT8D1|55830|glycosyltransferase 8 domain containing 1##BC119671|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK027517|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_152932|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AY358579|GLT8D1|55830|glycosyltransferase 8 domain containing 1	1.792978	0.0	denovo_WM_7:-37:0.390	denovo_WM_7:-39:0.356	denovo_WM_7:-52:0.405	denovo_WM_7:-54:0.349
chr4	167583309	167583420	reg1010595.p1	4.281	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	-788910	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	-1283207	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	-1334509	+	AK295407 NM_001204353 AK294637 AK295015 AK295281 AK091078 AK295414 AK313042 TSC_hg19_v1_chr4_-_168155646	572247	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	572340	-	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	572376	-	NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##AK295407|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204353|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294637|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295015|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295281|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK091078|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295414|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK313042|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.0	0.0	
chr5	133962052	133962200	reg1010206.p1	4.281	+	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-100321	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-100763	+	TSC_hg19_v1_chr5_+_133842276 BC032795	-119836	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	6371	-	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	22305	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	112184	+	D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand	0.0	0.0	
chr8	57913067	57913200	reg1014963.p1	4.281	+	TSC_hg19_v1_chr8_-_57906427 AK000428 NM_017813	-6707	-	BC067814 TSC_hg19_v1_chr8_-_57906402	-6731	-	TSC_hg19_v1_chr8_-_57906381 BC017797	-6755	-	TSC_hg19_v1_chr8_+_58907119 AK092221 NM_147189	994024	+	BC113645 NM_001077619 TSC_hg19_v1_chr8_+_59323919 AK126300 HQ258392 AL831990 AL833075 BX647876	1410752	+	X56088 M93133 BC101777 BC112184 NM_000780	1499574	-	AK000428|IMPAD1|54928|inositol monophosphatase domain containing 1##NM_017813|IMPAD1|54928|inositol monophosphatase domain containing 1##BC067814|IMPAD1|54928|inositol monophosphatase domain containing 1##BC017797|IMPAD1|54928|inositol monophosphatase domain containing 1##AK092221|FAM110B|90362|family with sequence similarity 110, member B##NM_147189|FAM110B|90362|family with sequence similarity 110, member B##BC113645|UBXN2B|137886|UBX domain protein 2B##NM_001077619|UBXN2B|137886|UBX domain protein 2B##AK126300|UBXN2B|137886|UBX domain protein 2B##HQ258392|UBXN2B|137886|UBX domain protein 2B##AL831990|UBXN2B|137886|UBX domain protein 2B##AL833075|UBXN2B|137886|UBX domain protein 2B##BX647876|UBXN2B|137886|UBX domain protein 2B##X56088|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##M93133|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC101777|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##BC112184|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1##NM_000780|CYP7A1|1581|cytochrome P450, family 7, subfamily A, polypeptide 1	0.992408	0.0	denovo_WM_7:25:0.956
chrX	90537393	90537472	reg1012077.p2	4.281	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	-1360421	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	-2535192	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-3764627	+	NM_080832	152164	+	NM_032967 AJ276804 AJ564847 AK299638 AK299813 AK316263 TSC_hg19_v1_chrX_+_91034373	496885	+	AB026187 AF332218 AF332219 AJ564932 NM_014522 NM_032968 NM_032969	552226	+	BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5##NM_032967|PCDH11X|27328|protocadherin 11 X-linked##AJ276804|PCDH11X|27328|protocadherin 11 X-linked##AJ564847|PCDH11X|27328|protocadherin 11 X-linked##AK299813|PCDH11X|27328|protocadherin 11 X-linked##AK316263|PCDH11X|27328|protocadherin 11 X-linked##AB026187|PCDH11X|27328|protocadherin 11 X-linked##AF332218|PCDH11X|27328|protocadherin 11 X-linked##AF332219|PCDH11X|27328|protocadherin 11 X-linked##AJ564932|PCDH11X|27328|protocadherin 11 X-linked##NM_014522|PCDH11X|27328|protocadherin 11 X-linked##NM_032968|PCDH11X|27328|protocadherin 11 X-linked##NM_032969|PCDH11X|27328|protocadherin 11 X-linked	0.997312	0.0	
chr1	24049567	24049670	reg1011216.p2	4.280	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-31319	+	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	-31338	+	NM_002167 X69111	-163334	-	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	20286	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	20365	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	55151	-	BC018970|RPL11|6135|ribosomal protein L11##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AL049675|LOC100506963|100506963|uncharacterized LOC100506963	0.998459	0.079912	denovo_WM_7:46:0.310	denovo_WM_7:47:0.310	denovo_WM_7:48:0.310
chr15	59042370	59042504	reg1010623.p1	4.280	+	TSC_hg19_v1_chr15_-_59041988 BC126253 BC143935 NM_001110	-383	-	TSC_hg19_v1_chr15_-_59041833 AK300472	-615	-	TSC_hg19_v1_chr15_-_59041794 BC055087 BC104659	-648	-	TSC_hg19_v1_chr15_+_59063396 AL833610 NM_001040450 NM_001040453	20970	+	BC060514 TSC_hg19_v1_chr15_+_59063500 AK297291 AK075319 AB075509 BC140811 BC144616	21085	+	AK000867 TSC_hg19_v1_chr15_-_59225776 AK055195 BC108656 AK291423 AK131242	183345	-	BC126253|ADAM10|102|ADAM metallopeptidase domain 10##BC143935|ADAM10|102|ADAM metallopeptidase domain 10##NM_001110|ADAM10|102|ADAM metallopeptidase domain 10##AK300472|ADAM10|102|ADAM metallopeptidase domain 10##BC055087|ADAM10|102|ADAM metallopeptidase domain 10##BC104659|ADAM10|102|ADAM metallopeptidase domain 10##AL833610|FAM63B|54629|family with sequence similarity 63, member B##NM_001040450|FAM63B|54629|family with sequence similarity 63, member B##NM_001040453|FAM63B|54629|family with sequence similarity 63, member B##BC060514|FAM63B|54629|family with sequence similarity 63, member B##AK297291|FAM63B|54629|family with sequence similarity 63, member B##AK075319|FAM63B|54629|family with sequence similarity 63, member B##AB075509|FAM63B|54629|family with sequence similarity 63, member B##BC140811|FAM63B|54629|family with sequence similarity 63, member B##BC144616|FAM63B|54629|family with sequence similarity 63, member B##AK000867|SLTM|79811|SAFB-like, transcription modulator##AK055195|SLTM|79811|SAFB-like, transcription modulator##BC108656|SLTM|79811|SAFB-like, transcription modulator##AK291423|SLTM|79811|SAFB-like, transcription modulator##AK131242|SLTM|79811|SAFB-like, transcription modulator	0.911235	0.0	denovo_WM_7:-47:0.815
chr5	176328780	176328915	reg1011391.p1	4.280	+	U51333 BC028129 NM_002115	-2524	-	TSC_hg19_v1_chr5_+_176237521 AK131380 NM_133369 BC157824	-91292	+	TSC_hg19_v1_chr5_+_176074497 AK024427 BC067105 BC010405 AF174603 CU679699 CU688248	-254295	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	104741	-	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	120872	+	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	185035	+	U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##AK131380|UNC5A|90249|unc-5 homolog A (C. elegans)##NM_133369|UNC5A|90249|unc-5 homolog A (C. elegans)##BC157824|UNC5A|90249|unc-5 homolog A (C. elegans)##AK024427|TSPAN17|26262|tetraspanin 17##BC067105|TSPAN17|26262|tetraspanin 17##BC010405|TSPAN17|26262|tetraspanin 17##AF174603|TSPAN17|26262|tetraspanin 17##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4	0.99967	0.0	
chr7	38700333	38700418	reg1014245.p1	4.280	+	TSC_hg19_v1_chr7_-_38671019 X81438 AF034996 NM_001635 NM_139316	-29298	-	AF498097 CU689866 BC034376 AK291447 TSC_hg19_v1_chr7_-_38670974	-29413	-	TSC_hg19_v1_chr7_-_38389583 BC035592	-310786	-	HQ257912 TSC_hg19_v1_chr7_-_38948792 BX648347 BC044851 AK314556 NM_014396 NM_080631 U87309	248418	-	NM_001166018 NM_007252	317233	+	TSC_hg19_v1_chr7_+_39606002 AK314937 NM_020192 AK293511 AF226046 BC022043 CR457198 DQ892829 DQ896074 DQ896075	905594	+	X81438|AMPH|273|amphiphysin##AF034996|AMPH|273|amphiphysin##NM_001635|AMPH|273|amphiphysin##NM_139316|AMPH|273|amphiphysin##AF498097|AMPH|273|amphiphysin##BC034376|AMPH|273|amphiphysin##AK291447|AMPH|273|amphiphysin##BC035592|TRGV5|6978|T cell receptor gamma variable 5##HQ257912|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BX648347|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BC044851|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##AK314556|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_014396|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_080631|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##U87309|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_001166018|POU6F2|11281|POU class 6 homeobox 2##NM_007252|POU6F2|11281|POU class 6 homeobox 2##AK314937|YAE1D1|57002|Yae1 domain containing 1##NM_020192|YAE1D1|57002|Yae1 domain containing 1##AF226046|YAE1D1|57002|Yae1 domain containing 1##BC022043|YAE1D1|57002|Yae1 domain containing 1##CR457198|YAE1D1|57002|Yae1 domain containing 1##DQ892829|YAE1D1|57002|Yae1 domain containing 1##DQ896074|YAE1D1|57002|Yae1 domain containing 1##DQ896075|YAE1D1|57002|Yae1 domain containing 1	0.597573	0.052849	denovo_WM_7:72:0.265	denovo_WM_7:75:0.260
chr8	73925030	73925210	reg1000952.p2	4.280	+	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	-4008	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-475477	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-937286	-	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	80322	-	BC150551 BC150552 NM_001243237	246616	-	CR456773 L16558 AB529035 BC071671 BC071895 BC087837 BC071894 BC001476 BC006095 X57959 AB055763 AK225246 AK225254 AK291119 AK313365 X52967 BC009599 NM_000971	280737	-	NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301##CR456773|RPL7|6129|ribosomal protein L7##L16558|RPL7|6129|ribosomal protein L7##BC071671|RPL7|6129|ribosomal protein L7##BC071895|RPL7|6129|ribosomal protein L7##BC087837|RPL7|6129|ribosomal protein L7##BC071894|RPL7|6129|ribosomal protein L7##BC006095|RPL7|6129|ribosomal protein L7##X57959|RPL7|6129|ribosomal protein L7##AK225246|RPL7|6129|ribosomal protein L7##AK225254|RPL7|6129|ribosomal protein L7##AK291119|RPL7|6129|ribosomal protein L7##AK313365|RPL7|6129|ribosomal protein L7##X52967|RPL7|6129|ribosomal protein L7##BC009599|RPL7|6129|ribosomal protein L7##NM_000971|RPL7|6129|ribosomal protein L7	0.0	0.0	
chr8	95432361	95432443	reg1012036.p2	4.280	+	TSC_hg19_v1_chr8_-_95274548 AK314017 BC022010 NM_005261 NM_181702	-157854	-	U10550 TSC_hg19_v1_chr8_-_95274525	-157880	-	AK312873 NM_001144663	-202872	-	AF007866 NM_001205263	16753	-	BC001965 AF112481 BC020668 AK290437 TSC_hg19_v1_chr8_-_95487344 NM_001205262 NM_012415	54917	-	AB037850 AF116724 HQ258534 TSC_hg19_v1_chr8_-_95565696 AL832487 BC112288 BC113380 NM_015496 NM_183009	133305	-	AK314017|GEM|2669|GTP binding protein overexpressed in skeletal muscle##BC022010|GEM|2669|GTP binding protein overexpressed in skeletal muscle##NM_005261|GEM|2669|GTP binding protein overexpressed in skeletal muscle##NM_181702|GEM|2669|GTP binding protein overexpressed in skeletal muscle##U10550|GEM|2669|GTP binding protein overexpressed in skeletal muscle##AK312873|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_001144663|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AF007866|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205263|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##BC001965|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AF112481|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##BC020668|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AK290437|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205262|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_012415|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AB037850|KIAA1429|25962|KIAA1429##AF116724|KIAA1429|25962|KIAA1429##AL832487|KIAA1429|25962|KIAA1429##BC112288|KIAA1429|25962|KIAA1429##BC113380|KIAA1429|25962|KIAA1429##NM_015496|KIAA1429|25962|KIAA1429##NM_183009|KIAA1429|25962|KIAA1429	0.997225	0.0	
chr19	19269598	19269749	reg1005250.p3	4.279	+	TSC_hg19_v1_chr19_-_19249268 BC005210 AK096964	-20398	-	TSC_hg19_v1_chr19_-_19249264 AK225424 AK000429 NM_017814	-20419	-	TSC_hg19_v1_chr19_+_19174802 NM_178526 BC045598 FN356975	-94864	+	TSC_hg19_v1_chr19_-_19281067 AK057210	11394	-	TSC_hg19_v1_chr19_-_19281094 NM_001145785	11420	-	TSC_hg19_v1_chr19_-_19302962 X68502 EU831418 EU831443 EU831511 EU831535 X63380 BC064537 BC000489 BC004449 BC010178 BC010931 AK301086 AK316328 BC157868 BC171869	33291	-	BC005210|TMEM161A|54929|transmembrane protein 161A##AK096964|TMEM161A|54929|transmembrane protein 161A##AK225424|TMEM161A|54929|transmembrane protein 161A##AK000429|TMEM161A|54929|transmembrane protein 161A##NM_017814|TMEM161A|54929|transmembrane protein 161A##NM_178526|SLC25A42|284439|solute carrier family 25, member 42##BC045598|SLC25A42|284439|solute carrier family 25, member 42##FN356975|SLC25A42|284439|solute carrier family 25, member 42##AK057210|MEF2B|100271849|myocyte enhancer factor 2B##NM_001145785|MEF2B|100271849|myocyte enhancer factor 2B##X68502|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##EU831418|MEF2BNB|729991|MEF2B neighbor##EU831443|MEF2BNB|729991|MEF2B neighbor##EU831511|MEF2BNB|729991|MEF2B neighbor##EU831535|MEF2BNB|729991|MEF2B neighbor##X63380|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC064537|MEF2BNB|729991|MEF2B neighbor##BC000489|MEF2BNB|729991|MEF2B neighbor##BC004449|MEF2BNB|729991|MEF2B neighbor##BC010178|MEF2BNB|729991|MEF2B neighbor##BC010931|MEF2BNB|729991|MEF2B neighbor##AK301086|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##AK316328|MEF2BNB-MEF2B|4207|MEF2BNB-MEF2B readthrough##BC157868|MEF2BNB|729991|MEF2B neighbor##BC171869|MEF2BNB|729991|MEF2B neighbor	1.801223	0.0	denovo_WM_7:84:0.482	denovo_WM_7:-86:0.587
chr20	50114434	50114547	reg1015669.p1	4.279	+	BC006367 TSC_hg19_v1_chr20_-_49639664 BC046629 AK290689 NM_002237	-474833	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	-539122	+	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	-539427	-	EU887573 EU887578 AB590566 TSC_hg19_v1_chr20_-_50159239 BC136418 BC144074	44649	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	44785	-	EU887574 EU887577 NM_001136021	64677	-	BC006367|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC046629|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##AK290689|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##NM_002237|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##EU887573|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887578|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC136418|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC144074|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	0.825619	0.0	denovo_WM_7:48:0.826
chr5	179248938	179249099	reg1010133.p2	4.279	+	TSC_hg19_v1_chr5_+_179248089 AK025146	-913	+	TSC_hg19_v1_chr5_+_179247911 BC003139 BC019111 U41806 AB528327 CU678396 DQ892878 EU176717	-1095	+	TSC_hg19_v1_chr5_+_179247904 AK293509 AK304877	-1115	+	BC050714 BC056889 CU686703 AK298954 TSC_hg19_v1_chr5_-_179285809 AK293901 BC069051 BX647375 AK295104 NM_001017987 NM_016175 AB528169 AM392546 AM393590 BX537968 CR936785	36823	-	TSC_hg19_v1_chr5_+_179286046 BC040901	36977	+	AB449893 TSC_hg19_v1_chr5_-_179334837 AB463306	85812	-	AK025146|SQSTM1|8878|sequestosome 1##BC003139|SQSTM1|8878|sequestosome 1##BC019111|SQSTM1|8878|sequestosome 1##U41806|SQSTM1|8878|sequestosome 1##DQ892878|SQSTM1|8878|sequestosome 1##EU176717|SQSTM1|8878|sequestosome 1##AK293509|SQSTM1|8878|sequestosome 1##AK304877|SQSTM1|8878|sequestosome 1##BC050714|C5orf45|51149|chromosome 5 open reading frame 45##BC056889|C5orf45|51149|chromosome 5 open reading frame 45##AK298954|C5orf45|51149|chromosome 5 open reading frame 45##AK293901|C5orf45|51149|chromosome 5 open reading frame 45##BC069051|C5orf45|51149|chromosome 5 open reading frame 45##BX647375|C5orf45|51149|chromosome 5 open reading frame 45##NM_001017987|C5orf45|51149|chromosome 5 open reading frame 45##NM_016175|C5orf45|51149|chromosome 5 open reading frame 45##AM392546|C5orf45|51149|chromosome 5 open reading frame 45##AM393590|C5orf45|51149|chromosome 5 open reading frame 45##BX537968|C5orf45|51149|chromosome 5 open reading frame 45##CR936785|C5orf45|51149|chromosome 5 open reading frame 45##AB449893|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)	0.996153	0.0	denovo_WM_7:-65:0.900
chrX	1455577	1455757	reg1003192.p2	4.279	+	BC035407 NM_002183	-159	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	-54084	+	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	-67953	+	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	55302	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	116134	-	AK301844 NM_001173473	116984	-	BC035407|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_002183|IL3RA|3563|interleukin 3 receptor, alpha (low affinity)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like	0.0	0.0	
chr13	80975391	80975512	reg1013827.p2	4.278	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-60387	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-62409	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-919896	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3480974	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3481049	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5397988	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.0	0.0	
chr16	87799589	87799709	reg1007154.p1	4.278	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-79	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-134	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-162939	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	103426	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	170498	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	185519	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.0	0.0	
chr17	45466217	45466377	reg1012155.p1	4.278	+	TSC_hg19_v1_chr17_+_45401357 NM_001195192 NM_152347 BC036407 BC037876	-64965	+	BC044604 TSC_hg19_v1_chr17_+_45401141	-65156	+	TSC_hg19_v1_chr17_+_45331260 AK300424	-135039	+	TSC_hg19_v1_chr17_-_45569837 BC090855 BC067758	103547	-	NM_006310 TSC_hg19_v1_chr17_+_45608460	142156	+	TSC_hg19_v1_chr17_+_45608556 AK096709	142275	+	NM_001195192|C17orf57|124989|chromosome 17 open reading frame 57##NM_152347|C17orf57|124989|chromosome 17 open reading frame 57##BC036407|C17orf57|124989|chromosome 17 open reading frame 57##BC037876|C17orf57|124989|chromosome 17 open reading frame 57##BC044604|C17orf57|124989|chromosome 17 open reading frame 57##BC090855|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2##BC067758|MRPL45P2|653479|mitochondrial ribosomal protein L45 pseudogene 2##NM_006310|NPEPPS|9520|aminopeptidase puromycin sensitive##AK096709|NPEPPS|9520|aminopeptidase puromycin sensitive	0.960386	0.0	denovo_WM_7:-7:0.524	denovo_WM_7:-11:0.363
chr1	19229111	19229257	reg1015833.p2	4.277	+	AB587364 DQ893505 DQ896489 TSC_hg19_v1_chr1_-_19229045 FJ462711 BC007581 BC023600 AK222486 U24266 U24267 AK289972 NM_003748 NM_170726	-30	-	AK294552 NM_001161504	-11800	-	NM_152232 AB527225	-43029	-	TSC_hg19_v1_chr1_-_19282773 NM_001136265	53615	-	AF348492 NM_020765 TSC_hg19_v1_chr1_-_19536751 BC041137	307562	-	TSC_hg19_v1_chr1_-_19578013 D42044 AB384435 CU689920 BX648708	348808	-	DQ893505|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##DQ896489|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##FJ462711|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##BC007581|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##BC023600|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK222486|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##U24266|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##U24267|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK289972|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_003748|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_170726|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##AK294552|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_001161504|ALDH4A1|8659|aldehyde dehydrogenase 4 family, member A1##NM_152232|TAS1R2|80834|taste receptor, type 1, member 2##NM_001136265|IFFO2|126917|intermediate filament family orphan 2##AF348492|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##NM_020765|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##BC041137|UBR4|23352|ubiquitin protein ligase E3 component n-recognin 4##D42044|KIAA0090|23065|KIAA0090##BX648708|KIAA0090|23065|KIAA0090	0.0	0.0	
chr16	33241093	33241185	reg1009811.p2	4.277	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-35541	+	AL133588 NM_016212	-36160	+	AK300387 TSC_hg19_v1_chr16_+_32752635	-488503	+	AL133588 NM_016212	20375	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	20994	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	13414133	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AK300387|LOC100289574|100289574|hect domain and RLD 2 pseudogene##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1	0.0	0.0	
chr2	65634374	65634484	reg1009414.p2	4.277	+	TSC_hg19_v1_chr2_-_65593867 NM_001128210	-40531	-	TSC_hg19_v1_chr2_-_65593766 AK299079	-40656	-	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-179494	+	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	24783	-	TSC_hg19_v1_chr2_-_65659661 BC111495 NM_181784	25247	-	TSC_hg19_v1_chr2_+_65663818 AK131224 BC033059	29408	+	NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC111495|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_181784|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK131224|FLJ16124|440867|FLJ16124 protein##BC033059|FLJ16124|440867|FLJ16124 protein	0.982612	0.0	denovo_WM_7:-43:0.891
chr6_mcf_hap5	3478219	3478399	reg1010641.p2	4.277	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.944129	0.0	denovo_WM_7:9:0.922	denovo_WM_7:24:0.776
chr8	26325009	26325129	reg1013891.p1	4.277	+	NM_004331 TSC_hg19_v1_chr8_+_26240583 AF452712 AK300286 AL132665 BC009603 AF067396 AF079221 AF060922 AK307195 AK300727 AF536326 AB004788 AK290213 BC001559 AB527613 BT019500 BT019501 CR456701 EU831983 EU832076	-84485	+	AK303981 NM_001177591	-174338	+	TSC_hg19_v1_chr8_+_26149092 M64929 AY189686	-175875	+	BC047515 TSC_hg19_v1_chr8_-_26371389 BC036489 AK055325 NM_007257	46365	-	TSC_hg19_v1_chr8_+_26371546 AK092377 NM_001197293 AB370195	46559	+	NM_001386 TSC_hg19_v1_chr8_+_26435441 BX647115 BC067109	110332	+	NM_004331|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF452712|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300286|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AL132665|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC009603|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF067396|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF079221|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF060922|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK307195|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300727|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF536326|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AB004788|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK290213|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC001559|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019500|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019501|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##CR456701|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU831983|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU832076|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK303981|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##NM_001177591|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##M64929|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AY189686|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC047515|PNMA2|10687|paraneoplastic antigen MA2##BC036489|PNMA2|10687|paraneoplastic antigen MA2##AK055325|PNMA2|10687|paraneoplastic antigen MA2##NM_007257|PNMA2|10687|paraneoplastic antigen MA2##AK092377|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001197293|DPYSL2|1808|dihydropyrimidinase-like 2##AB370195|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001386|DPYSL2|1808|dihydropyrimidinase-like 2##BX647115|DPYSL2|1808|dihydropyrimidinase-like 2##BC067109|DPYSL2|1808|dihydropyrimidinase-like 2	0.0	0.010139	
chr11	111990585	111990728	reg1012471.p1	4.276	+	TSC_hg19_v1_chr11_+_111957622 AB006202 AK075360 BC009574 BC012603 BC070307 BC071756 BT007238 CR456932 CU675071 DQ892701 DQ896292	-33035	+	TSC_hg19_v1_chr11_+_111957604 NM_003002 BC015188 BC005263 BC015992 BC071755 BC022350	-33085	+	TSC_hg19_v1_chr11_-_111957481 AF165967 AF152350 AF150087 BC000711 AK312169 AK025397 BC105986 BC106067 NM_012459	-33185	-	AF380360 AY044641 TSC_hg19_v1_chr11_-_112034813 AY266351 D49950 BC007007 AK311301 BC007461 NM_001243211 NM_001562	44102	-	BC029506 NM_031275 AF285600	47452	+	NM_031938 AK315300 BC041656 BC047934 AK091783 AX747181 AJ290393 CU692016 AF276432	55686	+	AB006202|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##AK075360|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC009574|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC012603|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC070307|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC071756|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BT007238|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##CR456932|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##DQ892701|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##DQ896292|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##NM_003002|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC015188|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC005263|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC015992|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC071755|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##BC022350|SDHD|6392|succinate dehydrogenase complex, subunit D, integral membrane protein##AF165967|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF152350|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF150087|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC000711|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK312169|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK025397|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC105986|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC106067|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##NM_012459|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF380360|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##AY044641|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##AY266351|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##D49950|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##BC007007|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##AK311301|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##BC007461|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##NM_001243211|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##NM_001562|IL18|3606|interleukin 18 (interferon-gamma-inducing factor)##BC029506|TEX12|56158|testis expressed 12##NM_031275|TEX12|56158|testis expressed 12##AF285600|TEX12|56158|testis expressed 12##NM_031938|BCO2|83875|beta-carotene oxygenase 2##AK315300|BCO2|83875|beta-carotene oxygenase 2##BC041656|BCO2|83875|beta-carotene oxygenase 2##BC047934|BCO2|83875|beta-carotene oxygenase 2##AK091783|BCO2|83875|beta-carotene oxygenase 2##AJ290393|BCO2|83875|beta-carotene oxygenase 2##AF276432|BCO2|83875|beta-carotene oxygenase 2	0.994629	0.0	
chr1	212113567	212113686	reg1003683.p2	4.276	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-109496	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-109878	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-264718	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	95264	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	95388	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	95492	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	1.443874	0.0	denovo_WM_7:28:0.442	denovo_WM_7:30:0.284	denovo_WM_7:52:0.315
chr14	81687069	81687209	reg1009583.p2	4.276	+	AK303378 BC024205 NM_000369 NM_001018036 NM_001142626 M31774 BC108653 BC009237 M73747 M32215 BC063613 AB209207 BC120972 BC120973 BC127628 BC127629 BC141970 S49816 AB384880 AY429111 CU687778 S45272	-265273	+	BC045834 AK309833 TSC_hg19_v1_chr14_-_81408073	-279081	-	NM_152446	-281256	-	D14887 TSC_hg19_v1_chr14_-_81687285 NM_015859 BC050703	141	-	D14886 NM_201595	435	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	177687	-	BC024205|TSHR|7253|thyroid stimulating hormone receptor##NM_000369|TSHR|7253|thyroid stimulating hormone receptor##NM_001018036|TSHR|7253|thyroid stimulating hormone receptor##NM_001142626|TSHR|7253|thyroid stimulating hormone receptor##M31774|TSHR|7253|thyroid stimulating hormone receptor##BC108653|TSHR|7253|thyroid stimulating hormone receptor##BC009237|TSHR|7253|thyroid stimulating hormone receptor##M73747|TSHR|7253|thyroid stimulating hormone receptor##M32215|TSHR|7253|thyroid stimulating hormone receptor##BC063613|TSHR|7253|thyroid stimulating hormone receptor##AB209207|TSHR|7253|thyroid stimulating hormone receptor##BC120972|TSHR|7253|thyroid stimulating hormone receptor##BC120973|TSHR|7253|thyroid stimulating hormone receptor##BC127628|TSHR|7253|thyroid stimulating hormone receptor##BC127629|TSHR|7253|thyroid stimulating hormone receptor##BC141970|TSHR|7253|thyroid stimulating hormone receptor##S49816|TSHR|7253|thyroid stimulating hormone receptor##AY429111|TSHR|7253|thyroid stimulating hormone receptor##S45272|TSHR|7253|thyroid stimulating hormone receptor##BC045834|CEP128|145508|centrosomal protein 128kDa##AK309833|CEP128|145508|centrosomal protein 128kDa##NM_152446|CEP128|145508|centrosomal protein 128kDa##D14887|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_015859|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##BC050703|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##D14886|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##NM_201595|GTF2A1|2957|general transcription factor IIA, 1, 19/37kDa##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2	0.99941	0.0	denovo_WM_7:-49:0.739
chr1	97238739	97238876	reg1013209.p2	4.276	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-51523	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-93611	-	AK292699 NM_001128142 NM_001199682 NM_015485 TSC_hg19_v1_chr1_+_95699765 AK292665 AK296476 AL050062 BC125142 BC065813 BC010936 BC016307 AB528227 AM392773 AM393257 CR533493	-1539059	+	BC030757 TSC_hg19_v1_chr1_+_97260652	21776	+	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	1147682	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	1147752	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AK292699|RWDD3|25950|RWD domain containing 3##NM_001128142|RWDD3|25950|RWD domain containing 3##NM_001199682|RWDD3|25950|RWD domain containing 3##NM_015485|RWDD3|25950|RWD domain containing 3##AK292665|RWDD3|25950|RWD domain containing 3##AK296476|RWDD3|25950|RWD domain containing 3##AL050062|RWDD3|25950|RWD domain containing 3##BC125142|RWDD3|25950|RWD domain containing 3##BC065813|RWDD3|25950|RWD domain containing 3##BC010936|RWDD3|25950|RWD domain containing 3##BC016307|RWDD3|25950|RWD domain containing 3##AM392773|RWDD3|25950|RWD domain containing 3##AM393257|RWDD3|25950|RWD domain containing 3##CR533493|RWDD3|25950|RWD domain containing 3##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase	0.0	0.0	
chr5	101842797	101842897	reg1008749.p1	4.276	+	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	-8214	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	-210739	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-1603919	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	358683	+	M37721 TSC_hg19_v1_chr5_+_102201730 AK296521 AK290158 S75037 S75038 AB527419 AB095007 BT007419	358959	+	BC151135 BC157835 BC015325 CR627424 AK295796 AK225572 AK000132 NM_017676 TSC_hg19_v1_chr5_-_102455843	612966	-	DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase##M37721|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK296521|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK290158|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75037|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75038|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AB095007|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BT007419|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BC151135|GIN1|54826|gypsy retrotransposon integrase 1##BC157835|GIN1|54826|gypsy retrotransposon integrase 1##BC015325|GIN1|54826|gypsy retrotransposon integrase 1##CR627424|GIN1|54826|gypsy retrotransposon integrase 1##AK295796|GIN1|54826|gypsy retrotransposon integrase 1##AK225572|GIN1|54826|gypsy retrotransposon integrase 1##AK000132|GIN1|54826|gypsy retrotransposon integrase 1##NM_017676|GIN1|54826|gypsy retrotransposon integrase 1	0.995286	0.968614	CTCF.p2:-47:0.969
chr5	96216631	96216737	reg1013430.p1	4.276	+	TSC_hg19_v1_chr5_+_96212203 AK312864 AB109031 AB163917 BC065240	-4496	+	NM_001130140 NM_022350 AK074281	-5018	+	AK310535 BC030775 NM_001198541	-66859	-	TSC_hg19_v1_chr5_+_96271097 AK096804	54409	+	NM_005575 D50810	54682	+	TSC_hg19_v1_chr5_+_96271783 U62768 AK314226 BC111718 BC113117 BC028692	55110	+	AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_001130140|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_022350|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK074281|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK096804|LNPEP|4012|leucyl/cystinyl aminopeptidase##NM_005575|LNPEP|4012|leucyl/cystinyl aminopeptidase##D50810|LNPEP|4012|leucyl/cystinyl aminopeptidase##U62768|LNPEP|4012|leucyl/cystinyl aminopeptidase##AK314226|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC111718|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC113117|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC028692|LNPEP|4012|leucyl/cystinyl aminopeptidase	0.0	0.0	
chr18	74774410	74774545	reg1008855.p1	4.275	+	TSC_hg19_v1_chr18_-_74729052 AK314553 NM_001025081 NM_001025090 NM_001025092 NM_002385 AK293922	-45410	-	CR536534 CR541919 TSC_hg19_v1_chr18_-_74729012 AK296492 M30515 M30516 BC008749 BC101771 BC101773 BC143348 BC143350 M30047 BC080654 M13577 AK289893 AK098402 AK128788 CR627018 AK128770 BC068550	-45482	-	AK074315 TSC_hg19_v1_chr18_-_74728814	-45721	-	TSC_hg19_v1_chr18_-_74844720 BC065248 AB208986 L18865	70240	-	TSC_hg19_v1_chr18_-_74844774 NM_001025100 NM_001025101	70302	-	TSC_hg19_v1_chr18_+_74961925 NM_001480	187489	+	AK314553|MBP|4155|myelin basic protein##NM_001025081|MBP|4155|myelin basic protein##NM_001025090|MBP|4155|myelin basic protein##NM_001025092|MBP|4155|myelin basic protein##NM_002385|MBP|4155|myelin basic protein##AK293922|MBP|4155|myelin basic protein##CR536534|MBP|4155|myelin basic protein##CR541919|MBP|4155|myelin basic protein##M30515|MBP|4155|myelin basic protein##M30516|MBP|4155|myelin basic protein##BC008749|MBP|4155|myelin basic protein##BC101771|MBP|4155|myelin basic protein##BC101773|MBP|4155|myelin basic protein##BC143348|MBP|4155|myelin basic protein##BC143350|MBP|4155|myelin basic protein##M30047|MBP|4155|myelin basic protein##BC080654|MBP|4155|myelin basic protein##M13577|MBP|4155|myelin basic protein##AK289893|MBP|4155|myelin basic protein##AK098402|MBP|4155|myelin basic protein##AK128788|MBP|4155|myelin basic protein##CR627018|MBP|4155|myelin basic protein##AK128770|MBP|4155|myelin basic protein##BC068550|MBP|4155|myelin basic protein##AK074315|MBP|4155|myelin basic protein##BC065248|MBP|4155|myelin basic protein##AB208986|MBP|4155|myelin basic protein##L18865|MBP|4155|myelin basic protein##NM_001025100|MBP|4155|myelin basic protein##NM_001025101|MBP|4155|myelin basic protein##NM_001480|GALR1|2587|galanin receptor 1	0.996625	0.0	denovo_WM_7:-1:0.877
chr20	48315274	48315454	reg1001144.p1	4.275	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-130675	-	BC110572 BC110573 NM_004975	-216185	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-420169	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	14866	-	AB004550 TSC_hg19_v1_chr20_-_48330359	14992	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	15102	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	0.976959	0.0	denovo_WM_7:-29:0.977
chr7	43391221	43391341	reg1014899.p1	4.275	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-239055	+	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	-419312	+	AK290654 TSC_hg19_v1_chr7_-_42971781 NM_002787	-419480	-	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	231413	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	377813	-	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	406986	+	AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32##AK290654|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##NM_002787|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A	1.910665	0.0	denovo_WM_7:-11:0.744
chrX	19874641	19874821	reg1004344.p2	4.275	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-56819	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-56856	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-185675	-	TSC_hg19_v1_chrX_-_19905450 AY542305	30732	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	30901	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	30973	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chr2	10575173	10575260	reg1012223.p1	4.274	+	AK000596 NM_134421	-131391	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-132167	+	BC093999 BC094001 NM_182626	-293237	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	13144	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	13236	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	254828	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	0.0	0.997227	CTCF.p2:30:0.997
chr2	214402281	214402363	reg1004250.p1	4.274	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-253165	+	AK124960 NM_001242575	-253394	-	BC028936 NM_001079526	-385990	-	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	874138	+	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	1272037	-	AY033486 NM_015657	1494487	-	BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	0.012157	0.0	
chr4	159707803	159707903	reg1012670.p2	4.274	+	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-17568	+	TSC_hg19_v1_chr4_+_159690177 NM_020840	-17675	+	AB528445 CR542081 DQ891562 DQ894749 TSC_hg19_v1_chr4_-_159644545 BC014893 L11667 BC030707 AK313929 NM_005038	-63325	-	AK058100 NM_152543	248479	-	AK294459 NM_014247	481144	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	3377298	-	AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##NM_020840|FNIP2|57600|folliculin interacting protein 2##CR542081|PPID|5481|peptidylprolyl isomerase D##DQ891562|PPID|5481|peptidylprolyl isomerase D##DQ894749|PPID|5481|peptidylprolyl isomerase D##BC014893|PPID|5481|peptidylprolyl isomerase D##L11667|PPID|5481|peptidylprolyl isomerase D##BC030707|PPID|5481|peptidylprolyl isomerase D##AK313929|PPID|5481|peptidylprolyl isomerase D##NM_005038|PPID|5481|peptidylprolyl isomerase D##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5	0.0	0.0	
chr4	37686908	37687018	reg1007473.p1	4.274	+	AK001879 NM_018302 AK225192	-101094	+	NM_001104629 BC037906	-231388	+	NM_001144990	-440274	+	TSC_hg19_v1_chr4_-_37687999 BC039540 AK075468 NM_001085399 NM_001085400	1010	-	TSC_hg19_v1_chr4_+_37828307 NM_018290 AL136705 AK310927	141337	+	TSC_hg19_v1_chr4_+_37828339 AK223237 AK303374 AF109360 BC010087 AK001845 AK297752 CR457274 CU679607	141380	+	AK001879|C4orf19|55286|chromosome 4 open reading frame 19##NM_018302|C4orf19|55286|chromosome 4 open reading frame 19##AK225192|C4orf19|55286|chromosome 4 open reading frame 19##NM_001104629|C4orf19|55286|chromosome 4 open reading frame 19##BC037906|C4orf19|55286|chromosome 4 open reading frame 19##NM_001144990|KIAA1239|57495|KIAA1239##BC039540|RELL1|768211|RELT-like 1##AK075468|RELL1|768211|RELT-like 1##NM_001085399|RELL1|768211|RELT-like 1##NM_001085400|RELL1|768211|RELT-like 1##NM_018290|PGM2|55276|phosphoglucomutase 2##AL136705|PGM2|55276|phosphoglucomutase 2##AK310927|PGM2|55276|phosphoglucomutase 2##AK223237|PGM2|55276|phosphoglucomutase 2##AK303374|PGM2|55276|phosphoglucomutase 2##AF109360|PGM2|55276|phosphoglucomutase 2##BC010087|PGM2|55276|phosphoglucomutase 2##AK001845|PGM2|55276|phosphoglucomutase 2##AK297752|PGM2|55276|phosphoglucomutase 2##CR457274|PGM2|55276|phosphoglucomutase 2	0.057067	0.0	
chr6	157957295	157957403	reg1011756.p1	4.274	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-154810	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-212132	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-212765	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	286940	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	287025	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	445538	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chr7	41142963	41143086	reg1012380.p2	4.274	+	AK299133 TSC_hg19_v1_chr7_+_40174603 AK296048 AK308764 AK307935 AK298516	-968415	+	AF397013 TSC_hg19_v1_chr7_+_40174572 AK021870 NM_001193311 NM_001193312 NM_001193313 NM_024728 BC098117 BC098261 BC098310 BC098318	-968493	+	TSC_hg19_v1_chr7_-_40174219 BC026265 NM_138701	-968893	-	AF218018 AK290584 BC007858 D49743 TSC_hg19_v1_chr7_-_41742684 NM_002192	599661	-	NM_000168	1133593	-	TSC_hg19_v1_chr7_-_42276797 AK308429	1133771	-	AK299133|C7orf10|79783|chromosome 7 open reading frame 10##AK296048|C7orf10|79783|chromosome 7 open reading frame 10##AK308764|C7orf10|79783|chromosome 7 open reading frame 10##AK307935|C7orf10|79783|chromosome 7 open reading frame 10##AK298516|C7orf10|79783|chromosome 7 open reading frame 10##AF397013|C7orf10|79783|chromosome 7 open reading frame 10##AK021870|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193311|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193312|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193313|C7orf10|79783|chromosome 7 open reading frame 10##NM_024728|C7orf10|79783|chromosome 7 open reading frame 10##BC098117|C7orf10|79783|chromosome 7 open reading frame 10##BC098261|C7orf10|79783|chromosome 7 open reading frame 10##BC098310|C7orf10|79783|chromosome 7 open reading frame 10##BC098318|C7orf10|79783|chromosome 7 open reading frame 10##BC026265|C7orf11|136647|chromosome 7 open reading frame 11##NM_138701|C7orf11|136647|chromosome 7 open reading frame 11##AF218018|INHBA|3624|inhibin, beta A##AK290584|INHBA|3624|inhibin, beta A##BC007858|INHBA|3624|inhibin, beta A##D49743|INHBA|3624|inhibin, beta A##NM_002192|INHBA|3624|inhibin, beta A##NM_000168|GLI3|2737|GLI family zinc finger 3##AK308429|GLI3|2737|GLI family zinc finger 3	0.0	0.0	
chr7	48018733	48018836	reg1007991.p1	4.274	+	AB061683 NM_138295	-30731	-	AK024728 NM_025031 BC113679 BC113681 AK092057 AX747337	-183846	+	AK126096 NM_001123065	-323943	+	BT019481 BT019482 CR536552 Y16893 AB463759 BC007013 TSC_hg19_v1_chr7_-_48019149 AK294117 AK290459 AF076844 AF110393	368	-	TSC_hg19_v1_chr7_-_48019247 NM_004507	445	-	AK302011 BC026189 AF429967 NM_001030019 NM_152782	49895	-	AB061683|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_138295|PKD1L1|168507|polycystic kidney disease 1 like 1##AK024728|C7orf69|80099|chromosome 7 open reading frame 69##NM_025031|C7orf69|80099|chromosome 7 open reading frame 69##BC113679|C7orf69|80099|chromosome 7 open reading frame 69##BC113681|C7orf69|80099|chromosome 7 open reading frame 69##AK092057|PKD1L1|168507|polycystic kidney disease 1 like 1##AK126096|C7orf65|401335|chromosome 7 open reading frame 65##NM_001123065|C7orf65|401335|chromosome 7 open reading frame 65##BT019481|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BT019482|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##CR536552|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##Y16893|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007013|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK294117|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK290459|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF076844|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF110393|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##NM_004507|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK302011|SUN3|256979|Sad1 and UNC84 domain containing 3##BC026189|SUN3|256979|Sad1 and UNC84 domain containing 3##AF429967|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_001030019|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_152782|SUN3|256979|Sad1 and UNC84 domain containing 3	0.0	0.0	
chr1	12125052	12125168	reg1009907.p1	4.273	+	M83554 NM_001243 BC136400 BC171762 S75768	-1566	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-45540	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-45576	+	D86042 BC063482 NM_152942 BC073839 BC141804	60906	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	101951	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	102001	+	M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.998839	0.0	
chr15	61091197	61091279	reg1004844.p2	4.273	+	U04899 U04898 NM_002943 NM_134260	-171553	-	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	-206559	-	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	-319964	-	AB307694 TSC_hg19_v1_chr15_-_61521433 BC008831	430186	-	TSC_hg19_v1_chr15_-_61521478 NM_134261 U04897	430259	-	TSC_hg19_v1_chr15_-_62352590 AK307518 AB037842 AJ608770 AJ608771 AJ626860 AJ626861 NM_001018088 NM_017684 NM_018080 NM_020821	1261376	-	U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##AB307694|RORA|6095|RAR-related orphan receptor A##BC008831|RORA|6095|RAR-related orphan receptor A##NM_134261|RORA|6095|RAR-related orphan receptor A##U04897|RORA|6095|RAR-related orphan receptor A##AK307518|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AB037842|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608770|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ608771|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626860|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##AJ626861|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_001018088|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_017684|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_018080|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)##NM_020821|VPS13C|54832|vacuolar protein sorting 13 homolog C (S. cerevisiae)	0.99951	0.0	
chr17	1102599	1102779	reg1013516.p2	4.273	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-12101	-	AK302682 AB384846 TSC_hg19_v1_chr17_-_1083048 NM_021962 U01147	-19620	-	TSC_hg19_v1_chr17_-_1029059 AK307827	-73615	-	NM_001164405	71168	+	AB090231 NM_172367 BC142615	80275	+	TSC_hg19_v1_chr17_-_1248347 L13388	145667	-	AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##AK302682|ABR|29|active BCR-related gene##NM_021962|ABR|29|active BCR-related gene##U01147|ABR|29|active BCR-related gene##AK307827|ABR|29|active BCR-related gene##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.01545	0.0	
chr17	41446583	41446689	reg1003265.p1	4.273	+	TSC_hg19_v1_chr17_+_41363905 AK056132 AK290387 AK299974 AK301571 NM_145041	-82757	+	TSC_hg19_v1_chr17_+_41323230 AK299328 AK290005 AK297425 BC012591 X76952 NM_005899 BC009808 AY450308	-123414	+	TSC_hg19_v1_chr17_+_41322538 D30756 NM_031862 AF227189 NM_031858	-124143	+	AL832479 TSC_hg19_v1_chr17_-_41465694 AK123585 AK311685	19054	-	TSC_hg19_v1_chr17_+_41476360 NM_001661 AK314951 BC000043 AB060692 L38490	29731	+	AK294046 TSC_hg19_v1_chr17_+_41561351 BC020697 AK303319 D50487 NM_004941 AK291664	114661	+	AK056132|TMEM106A|113277|transmembrane protein 106A##AK290387|TMEM106A|113277|transmembrane protein 106A##AK299974|TMEM106A|113277|transmembrane protein 106A##AK301571|TMEM106A|113277|transmembrane protein 106A##NM_145041|TMEM106A|113277|transmembrane protein 106A##AK299328|NBR1|4077|neighbor of BRCA1 gene 1##AK290005|NBR1|4077|neighbor of BRCA1 gene 1##AK297425|NBR1|4077|neighbor of BRCA1 gene 1##X76952|NBR1|4077|neighbor of BRCA1 gene 1##NM_005899|NBR1|4077|neighbor of BRCA1 gene 1##BC009808|NBR1|4077|neighbor of BRCA1 gene 1##AY450308|NBR1|4077|neighbor of BRCA1 gene 1##D30756|NBR1|4077|neighbor of BRCA1 gene 1##NM_031862|NBR1|4077|neighbor of BRCA1 gene 1##AF227189|NBR1|4077|neighbor of BRCA1 gene 1##NM_031858|NBR1|4077|neighbor of BRCA1 gene 1##AL832479|LOC100130581|100130581|uncharacterized LOC100130581##AK123585|LOC100130581|100130581|uncharacterized LOC100130581##AK311685|LOC100130581|100130581|uncharacterized LOC100130581##NM_001661|ARL4D|379|ADP-ribosylation factor-like 4D##AK314951|ARL4D|379|ADP-ribosylation factor-like 4D##BC000043|ARL4D|379|ADP-ribosylation factor-like 4D##AB060692|ARL4D|379|ADP-ribosylation factor-like 4D##L38490|ARL4D|379|ADP-ribosylation factor-like 4D##AK294046|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##BC020697|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK303319|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##D50487|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##NM_004941|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8##AK291664|DHX8|1659|DEAH (Asp-Glu-Ala-His) box polypeptide 8	0.0	0.0	
chr2	153421448	153421554	reg1003737.p2	4.273	+	BC113878 BC114438 TSC_hg19_v1_chr2_+_153191857 AB067489 BC167159 AB385514	-229528	+	TSC_hg19_v1_chr2_+_153191687 NM_052905	-229831	+	TSC_hg19_v1_chr2_-_153032266 AB463258 AM393419 CU688564 DQ892427 DQ895641 AK292265 AK292847 AK310863 AF042273 AF042274 AL133600 BC022277 BC028740 NM_005843	-389151	-	TSC_hg19_v1_chr2_-_153573924 U70667 AF049524 AF049528 BC000273 BC073138 BC011788 AF049523 AK298547 AK024810 BC029414 NM_017892	152419	-	TSC_hg19_v1_chr2_+_153574392 NM_152522 AK023109	152947	+	TSC_hg19_v1_chr2_+_153575123 AK315657	153614	+	BC113878|FMNL2|114793|formin-like 2##BC114438|FMNL2|114793|formin-like 2##AB067489|FMNL2|114793|formin-like 2##BC167159|FMNL2|114793|formin-like 2##NM_052905|FMNL2|114793|formin-like 2##AM393419|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ892427|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##DQ895641|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292265|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK292847|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AK310863|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042273|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AF042274|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##AL133600|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC022277|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##BC028740|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##NM_005843|STAM2|10254|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2##U70667|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049524|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049528|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC000273|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC073138|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC011788|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AF049523|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK298547|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##AK024810|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##BC029414|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_017892|PRPF40A|55660|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)##NM_152522|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK023109|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AK315657|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6	0.0	0.0	
chr2	238807275	238807455	reg1004919.p1	4.273	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	-39113	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	-99945	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-206290	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	68259	+	TSC_hg19_v1_chr2_+_238875673 AK290063	68315	+	TSC_hg19_v1_chr2_+_238875689 BC010549 AK294107	68338	+	NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##BC010549|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK294107|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.063421	0.0	
chr7	126084096	126084224	reg1012192.p1	4.273	+	NM_001042594 NM_015450	-1514124	-	BC130600 BC130604 NM_001024603	-1653358	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1678364	-	NM_000845	799408	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	808205	-	TSC_hg19_v1_chr7_-_126893165 AK290197	808992	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	0.991357	0.0	denovo_WM_7:-22:0.733
chr9	69268741	69268896	reg1011028.p2	4.273	+	AF265442 BC069006 AK293173 NM_001085457	-6264	-	NM_001085476	-66615	-	TSC_hg19_v1_chr9_+_69065493 AK311167	-203280	+	AL136793 NM_001098805	113162	+	NM_001126334	909996	-	NM_001099279 NM_199244	1160912	-	AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.99655	0.0	denovo_WM_7:17:0.246	denovo_WM_7:18:0.287	denovo_WM_7:21:0.430
chr12	66868581	66868647	reg1014783.p1	4.272	+	TSC_hg19_v1_chr12_+_66696305 NM_033647 BC143409 BC143411 AK290894 AK024464 AB527324 AF319995	-172285	+	BC069388 AK298645 TSC_hg19_v1_chr12_+_66583064 AB590803 CU691242	-285561	+	TSC_hg19_v1_chr12_+_66583004 AF113136	-285604	+	BC115393 BC115394 TSC_hg19_v1_chr12_-_67072757 AK307576	204142	-	TSC_hg19_v1_chr12_-_67072881 AK095519 NM_001178074 NM_021150	204288	-	NM_018448 TSC_hg19_v1_chr12_+_67663121 AK292456	794488	+	NM_033647|HELB|92797|helicase (DNA) B##BC143409|HELB|92797|helicase (DNA) B##BC143411|HELB|92797|helicase (DNA) B##AK290894|HELB|92797|helicase (DNA) B##AF319995|HELB|92797|helicase (DNA) B##BC069388|IRAK3|11213|interleukin-1 receptor-associated kinase 3##AK298645|IRAK3|11213|interleukin-1 receptor-associated kinase 3##AF113136|IRAK3|11213|interleukin-1 receptor-associated kinase 3##BC115393|GRIP1|23426|glutamate receptor interacting protein 1##BC115394|GRIP1|23426|glutamate receptor interacting protein 1##AK307576|GRIP1|23426|glutamate receptor interacting protein 1##AK095519|GRIP1|23426|glutamate receptor interacting protein 1##NM_001178074|GRIP1|23426|glutamate receptor interacting protein 1##NM_021150|GRIP1|23426|glutamate receptor interacting protein 1##NM_018448|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK292456|CAND1|55832|cullin-associated and neddylation-dissociated 1	0.0	0.0	
chr14	50580232	50580355	reg1007317.p1	4.272	+	AF390030 NM_001014830	-20933	-	AK091232 AX746864 NM_001012706	-106056	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-219887	+	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	2977	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	117690	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	117807	-	AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)	0.996928	0.0	denovo_WM_7:38:0.405	denovo_WM_7:39:0.405
chr17	44234227	44234339	reg1013596.p2	4.272	+	TSC_hg19_v1_chr17_+_44101553 AB073354	-132713	+	BC130319 BC130321 NM_001007532 AY179170	-157653	+	TSC_hg19_v1_chr17_+_44068829 AY526356	-165449	+	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	35871	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	36026	-	AK291259 NM_001193465	68444	-	AB073354|MAPT|4137|microtubule-associated protein tau##BC130319|STH|246744|saitohin##BC130321|STH|246744|saitohin##NM_001007532|STH|246744|saitohin##AY179170|STH|246744|saitohin##AY526356|MAPT|4137|microtubule-associated protein tau##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267	0.991836	0.043936	denovo_WM_7:-7:0.331	denovo_WM_7:-8:0.331	denovo_WM_7:-9:0.331
chr1	92398077	92398186	reg1013631.p1	4.272	+	L07594 NM_001195684	-26573	-	AK225799 TSC_hg19_v1_chr1_-_92351709 NM_001195683 NM_003243	-46384	-	AK291345 BC126116 BC136295 BC143869 TSC_hg19_v1_chr1_-_92351559	-46614	-	AY338951 NM_001242805 NM_001242806 NM_001242807 NM_001242808 NM_001242810 NM_207189 AK316442	16796	+	NM_001726 AF019085	19598	+	TSC_hg19_v1_chr1_+_92495532 NM_173567 BC041475 AK074822 CU691994	97429	+	L07594|TGFBR3|7049|transforming growth factor, beta receptor III##NM_001195684|TGFBR3|7049|transforming growth factor, beta receptor III##AK225799|TGFBR3|7049|transforming growth factor, beta receptor III##NM_001195683|TGFBR3|7049|transforming growth factor, beta receptor III##NM_003243|TGFBR3|7049|transforming growth factor, beta receptor III##AK291345|TGFBR3|7049|transforming growth factor, beta receptor III##BC126116|TGFBR3|7049|transforming growth factor, beta receptor III##BC136295|TGFBR3|7049|transforming growth factor, beta receptor III##BC143869|TGFBR3|7049|transforming growth factor, beta receptor III##AY338951|BRDT|676|bromodomain, testis-specific##NM_001242805|BRDT|676|bromodomain, testis-specific##NM_001242806|BRDT|676|bromodomain, testis-specific##NM_001242807|BRDT|676|bromodomain, testis-specific##NM_001242808|BRDT|676|bromodomain, testis-specific##NM_001242810|BRDT|676|bromodomain, testis-specific##NM_207189|BRDT|676|bromodomain, testis-specific##AK316442|BRDT|676|bromodomain, testis-specific##NM_001726|BRDT|676|bromodomain, testis-specific##AF019085|BRDT|676|bromodomain, testis-specific##NM_173567|EPHX4|253152|epoxide hydrolase 4##BC041475|EPHX4|253152|epoxide hydrolase 4##AK074822|EPHX4|253152|epoxide hydrolase 4	0.996202	0.0	
chr1	94215452	94215632	reg1006347.p2	4.272	+	U92715 TSC_hg19_v1_chr1_-_94147394 BC039895 AF124250 NM_003567	-68215	-	TSC_hg19_v1_chr1_+_94057602 BC084562	-157935	+	TSC_hg19_v1_chr1_+_94057524 AK307291	-158002	+	TSC_hg19_v1_chr1_-_94344731 HQ258657 AK302909 AY394925 U15552 BC063040 BC047688	129172	-	AK222722 AK292379 AK308808 TSC_hg19_v1_chr1_-_94344763 BC001784 BC130622 AB046574 BC020634 AY336729 NM_014597	129206	-	TSC_hg19_v1_chr1_-_94374956 BC041809 L35546	159420	-	U92715|BCAR3|8412|breast cancer anti-estrogen resistance 3##BC039895|BCAR3|8412|breast cancer anti-estrogen resistance 3##AF124250|BCAR3|8412|breast cancer anti-estrogen resistance 3##NM_003567|BCAR3|8412|breast cancer anti-estrogen resistance 3##BC084562|LOC100129046|100129046|uncharacterized LOC100129046##AK307291|LOC100129046|100129046|uncharacterized LOC100129046##HQ258657|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK302909|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AY394925|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##U15552|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC063040|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC047688|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK222722|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK292379|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AK308808|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC001784|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC130622|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AB046574|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC020634|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##AY336729|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##NM_014597|DNTTIP2|30836|deoxynucleotidyltransferase, terminal, interacting protein 2##BC041809|GCLM|2730|glutamate-cysteine ligase, modifier subunit##L35546|GCLM|2730|glutamate-cysteine ligase, modifier subunit	0.995438	0.0	denovo_WM_7:-87:0.492	denovo_WM_7:-88:0.492
chr2	21021804	21021945	reg1014093.p2	4.272	+	AF522369 NM_182828	-155451	+	TSC_hg19_v1_chr2_-_20850859 AB527583 CU691206 CU693338 BC057389 BC038847 BC050636 BC027947 AK024311 AK314383 NM_022460	-171026	-	AK310813 AK312487 AK124398 AK297495 AK309991 BC066954 NM_004040	-375042	+	TSC_hg19_v1_chr2_-_21022845 AK025473 NM_021925 AK299244 AK300494 BC017473 AK316162 AK299555 AK301493 AK316204 AK316310	979	-	M36676 TSC_hg19_v1_chr2_-_21225654 M31030	203819	-	TSC_hg19_v1_chr2_-_21228195 X03325	206374	-	AF522369|GDF7|151449|growth differentiation factor 7##NM_182828|GDF7|151449|growth differentiation factor 7##BC057389|HS1BP3|64342|HCLS1 binding protein 3##BC038847|HS1BP3|64342|HCLS1 binding protein 3##BC050636|HS1BP3|64342|HCLS1 binding protein 3##BC027947|HS1BP3|64342|HCLS1 binding protein 3##AK024311|HS1BP3|64342|HCLS1 binding protein 3##AK314383|HS1BP3|64342|HCLS1 binding protein 3##NM_022460|HS1BP3|64342|HCLS1 binding protein 3##AK312487|RHOB|388|ras homolog gene family, member B##AK124398|RHOB|388|ras homolog gene family, member B##BC066954|RHOB|388|ras homolog gene family, member B##NM_004040|RHOB|388|ras homolog gene family, member B##AK025473|C2orf43|60526|chromosome 2 open reading frame 43##NM_021925|C2orf43|60526|chromosome 2 open reading frame 43##AK299244|C2orf43|60526|chromosome 2 open reading frame 43##AK300494|C2orf43|60526|chromosome 2 open reading frame 43##BC017473|C2orf43|60526|chromosome 2 open reading frame 43##AK316162|C2orf43|60526|chromosome 2 open reading frame 43##AK299555|C2orf43|60526|chromosome 2 open reading frame 43##AK301493|C2orf43|60526|chromosome 2 open reading frame 43##AK316204|C2orf43|60526|chromosome 2 open reading frame 43##AK316310|C2orf43|60526|chromosome 2 open reading frame 43##M36676|APOB|338|apolipoprotein B (including Ag(x) antigen)##M31030|APOB|338|apolipoprotein B (including Ag(x) antigen)##X03325|APOB|338|apolipoprotein B (including Ag(x) antigen)	0.990252	0.0	denovo_WM_7:20:0.967
chr22	25984582	25984666	reg1017756.p1	4.272	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	-23678	+	TSC_hg19_v1_chr22_+_25960802 BC036797 NM_005160	-23825	+	TSC_hg19_v1_chr22_+_25844071 BC047380 BC037884	-140548	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	153496	+	TSC_hg19_v1_chr22_+_26138168 AY077700	153560	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	580813	+	BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC036797|ADRBK2|157|adrenergic, beta, receptor kinase 2##NM_005160|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC047380|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC037884|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB##AY077700|MYO18B|84700|myosin XVIIIB##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like	0.0	0.0	
chr4	185316558	185316675	reg1008982.p1	4.272	+	BC035035 AY358676 AK057370 NM_153343	-177551	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-488705	+	TSC_hg19_v1_chr4_+_184827807 AK289840	-488796	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	79065	-	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	253985	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	254217	+	BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK289840|STOX2|56977|storkhead box 2##X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111	0.998964	0.0	
chr5	106800698	106800829	reg1013821.p1	4.272	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3902282	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4206306	+	BC024591 NM_015216 AB463068	-4335489	+	AK308672 NM_001962 U26403	205827	-	TSC_hg19_v1_chr5_-_107717106 AK126722	916367	-	BC063316 NM_001163315	917035	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.999409	0.0	denovo_WM_7:8:0.739
chr6	131285581	131285685	reg1009597.p1	4.272	+	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	-137071	+	AB052099 NM_052913	-527372	+	AK091882 AX747235 NM_001017373	-741535	-	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	5918	-	CR749262 CR936793 NM_001252660	36254	-	AF027299 TSC_hg19_v1_chr6_-_131384381 BC034718 AB209522	98718	-	BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AF027299|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##BC034718|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##AB209522|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2	0.974301	0.0	denovo_WM_7:3:0.716
chr17	1092484	1092648	reg1014613.p1	4.271	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-1978	-	AK302682 AB384846 TSC_hg19_v1_chr17_-_1083048 NM_021962 U01147	-9497	-	TSC_hg19_v1_chr17_-_1029059 AK307827	-63492	-	NM_001164405	81291	+	AB090231 NM_172367 BC142615	90398	+	TSC_hg19_v1_chr17_-_1248347 L13388	155790	-	AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##AK302682|ABR|29|active BCR-related gene##NM_021962|ABR|29|active BCR-related gene##U01147|ABR|29|active BCR-related gene##AK307827|ABR|29|active BCR-related gene##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.997979	0.0	denovo_WM_7:86:0.298	denovo_WM_7:87:0.298	denovo_WM_7:88:0.298
chr17	28353880	28353973	reg1012575.p2	4.271	+	NM_198529 BX648689 BC137519	-85222	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	-96793	-	AK302745 AK303060 NM_001145053 AK299608	-97030	+	TSC_hg19_v1_chr17_+_28443846 AK297102 AL136806 NM_032141 AK094552 BC062425 AK313963 BC105044 BC105046 BC143417 BC143539 BC046116 BC040118 AF161358 BC016313 AB462988 AM392705 AM392719 CR533555	89915	+	NM_001045	209027	-	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	265033	-	NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AK297102|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AL136806|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_032141|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK094552|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC062425|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK313963|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105044|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105046|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143417|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143539|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC046116|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC040118|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AF161358|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC016313|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392705|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392719|NSRP1|84081|nuclear speckle splicing regulatory protein 1##CR533555|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_001045|SLC6A4|6532|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase	2.760625	0.618889	CTCF.p2:-32:0.619	denovo_WM_7:58:0.726	denovo_WM_7:73:0.725	denovo_WM_7:88:0.744
chr19	2597909	2598015	reg1004983.p1	4.271	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-121724	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-141002	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-141026	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	104733	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	104780	-	AK124445 TSC_hg19_v1_chr19_-_2717420	119387	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.989576	0.0	denovo_WM_7:-57:0.236	denovo_WM_7:-58:0.236	denovo_WM_7:-59:0.236	denovo_WM_7:-60:0.236
chr1	9589260	9589415	reg1012705.p1	4.271	+	TSC_hg19_v1_chr1_+_9415945 CU677397	-173391	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	-236368	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	-236400	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	10195	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	10299	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	59619	+	AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201	0.997704	0.028351	denovo_WM_7:1:0.827
chr2	85203181	85203341	reg1014348.p2	4.271	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	-4770	+	TSC_hg19_v1_chr2_+_85198299 NM_020122	-4977	+	TSC_hg19_v1_chr2_+_85133055 M92381	-70199	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	157398	+	TSC_hg19_v1_chr2_-_85555100 CU678967 EU176441 EU176775 X94333 BC028219	351811	-	AK223063 TSC_hg19_v1_chr2_-_85555113 AK126465 AK222829 BX640733 AK312479 BC008461 AF027515 AF027516 U62390	351869	-	BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##M92381|TMSB10|9168|thymosin beta 10##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##EU176441|TGOLN2|10618|trans-golgi network protein 2##EU176775|TGOLN2|10618|trans-golgi network protein 2##X94333|TGOLN2|10618|trans-golgi network protein 2##BC028219|TGOLN2|10618|trans-golgi network protein 2##AK223063|TGOLN2|10618|trans-golgi network protein 2##AK126465|TGOLN2|10618|trans-golgi network protein 2##AK222829|TGOLN2|10618|trans-golgi network protein 2##BX640733|TGOLN2|10618|trans-golgi network protein 2##AK312479|TGOLN2|10618|trans-golgi network protein 2##BC008461|TGOLN2|10618|trans-golgi network protein 2##AF027515|TGOLN2|10618|trans-golgi network protein 2##AF027516|TGOLN2|10618|trans-golgi network protein 2##U62390|TGOLN2|10618|trans-golgi network protein 2	0.998672	0.0	
chr5	36929258	36929438	reg1012206.p1	4.271	+	TSC_hg19_v1_chr5_+_36876945 BC146821 BX640644 BC131490 AK290347 BX538178 BX538177	-52278	+	TSC_hg19_v1_chr5_+_36876875 NM_015384 NM_133433 AJ627032 AJ640137	-52484	+	TSC_hg19_v1_chr5_-_36876762 AK000901	-52585	-	AK055192 TSC_hg19_v1_chr5_-_37185009	255629	-	TSC_hg19_v1_chr5_-_37249466 NM_023073	320118	-	AB018334 NM_004298	441538	-	BC146821|NIPBL|25836|Nipped-B homolog (Drosophila)##BX640644|NIPBL|25836|Nipped-B homolog (Drosophila)##BC131490|NIPBL|25836|Nipped-B homolog (Drosophila)##AK290347|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538178|NIPBL|25836|Nipped-B homolog (Drosophila)##BX538177|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_015384|NIPBL|25836|Nipped-B homolog (Drosophila)##NM_133433|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ627032|NIPBL|25836|Nipped-B homolog (Drosophila)##AJ640137|NIPBL|25836|Nipped-B homolog (Drosophila)##AK000901|LOC646719|646719|uncharacterized LOC646719##AK055192|C5orf42|65250|chromosome 5 open reading frame 42##NM_023073|C5orf42|65250|chromosome 5 open reading frame 42##AB018334|NUP155|9631|nucleoporin 155kDa##NM_004298|NUP155|9631|nucleoporin 155kDa	0.0	0.0	
chr8	8477088	8477218	reg1012711.p1	4.271	+	AK122582 NM_001080826	-237931	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-301265	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-391011	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	82545	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	273785	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	383212	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.988896	0.0	denovo_WM_7:24:0.211	denovo_WM_7:25:0.363	denovo_WM_7:28:0.256
chrX	105700831	105700973	reg1013455.p1	4.271	+	BC031229 NM_001171020 NM_152423	-288605	+	TSC_hg19_v1_chrX_-_105282719 AK310778 NM_000354	-418173	-	TSC_hg19_v1_chrX_+_105066559 AK131549	-634336	+	NM_001184782 NM_018015 TSC_hg19_v1_chrX_+_105855208 BC047503 AK001040 BC070110 AK291730 BC011483 BC033709 BC054032 CU687040 CU689708	154332	+	BC036901 NM_024539 AK126553	236173	+	TSC_hg19_v1_chrX_+_105969932 AK074264 NM_194463 BC063404 AF394689 CU687692	269106	+	BC031229|MUM1L1|139221|melanoma associated antigen (mutated) 1-like 1##NM_001171020|MUM1L1|139221|melanoma associated antigen (mutated) 1-like 1##NM_152423|MUM1L1|139221|melanoma associated antigen (mutated) 1-like 1##AK310778|SERPINA7|6906|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7##NM_000354|SERPINA7|6906|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7##AK131549|NRK|203447|Nik related kinase##NM_001184782|CXorf57|55086|chromosome X open reading frame 57##NM_018015|CXorf57|55086|chromosome X open reading frame 57##BC047503|CXorf57|55086|chromosome X open reading frame 57##AK001040|CXorf57|55086|chromosome X open reading frame 57##BC070110|CXorf57|55086|chromosome X open reading frame 57##AK291730|CXorf57|55086|chromosome X open reading frame 57##BC011483|CXorf57|55086|chromosome X open reading frame 57##BC033709|CXorf57|55086|chromosome X open reading frame 57##BC054032|CXorf57|55086|chromosome X open reading frame 57##BC036901|RNF128|79589|ring finger protein 128##NM_024539|RNF128|79589|ring finger protein 128##AK126553|RNF128|79589|ring finger protein 128##AK074264|RNF128|79589|ring finger protein 128##NM_194463|RNF128|79589|ring finger protein 128##BC063404|RNF128|79589|ring finger protein 128##AF394689|RNF128|79589|ring finger protein 128	0.973582	0.0	denovo_WM_7:52:0.219	denovo_WM_7:55:0.717
chr20	48327484	48327664	reg1011518.p1	4.270	+	AF297048 AF297049 AF297050 AF297051 AF297052 D38145 NM_000961 BC101809 BC101811 BC143381	-142885	-	BC110572 BC110573 NM_004975	-228395	-	BC062222 BC105282 TSC_hg19_v1_chr20_+_47895178 BC060315 BC032480 AY339614	-432379	+	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	2656	-	AB004550 TSC_hg19_v1_chr20_-_48330359	2782	-	TSC_hg19_v1_chr20_-_48330471 NM_004776	2892	-	AF297048|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297049|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297050|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297051|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##AF297052|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##D38145|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##NM_000961|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101809|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC101811|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC143381|PTGIS|5740|prostaglandin I2 (prostacyclin) synthase##BC110572|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC110573|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##NM_004975|KCNB1|3745|potassium voltage-gated channel, Shab-related subfamily, member 1##BC062222|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC105282|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC060315|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##BC032480|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##AY339614|ZNFX1-AS1|441951|ZNFX1 antisense RNA 1 (non-protein coding)##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5	1.005135	0.0	denovo_WM_7:47:0.248	denovo_WM_7:48:0.248	denovo_WM_7:49:0.248	denovo_WM_7:50:0.248
chr4	37852844	37853023	reg1000878.p2	4.270	+	TSC_hg19_v1_chr4_+_37828339 AK223237 AK303374 AF109360 BC010087 AK001845 AK297752 CR457274 CU679607	-24590	+	TSC_hg19_v1_chr4_+_37828307 NM_018290 AL136705 AK310927	-24633	+	TSC_hg19_v1_chr4_-_37687999 BC039540 AK075468 NM_001085399 NM_001085400	-164960	-	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	39856	+	AF095288 BC069114 BC069400 NM_006607	109122	+	TSC_hg19_v1_chr4_+_37979032 AK303574	126084	+	AK223237|PGM2|55276|phosphoglucomutase 2##AK303374|PGM2|55276|phosphoglucomutase 2##AF109360|PGM2|55276|phosphoglucomutase 2##BC010087|PGM2|55276|phosphoglucomutase 2##AK001845|PGM2|55276|phosphoglucomutase 2##AK297752|PGM2|55276|phosphoglucomutase 2##CR457274|PGM2|55276|phosphoglucomutase 2##NM_018290|PGM2|55276|phosphoglucomutase 2##AL136705|PGM2|55276|phosphoglucomutase 2##AK310927|PGM2|55276|phosphoglucomutase 2##BC039540|RELL1|768211|RELT-like 1##AK075468|RELL1|768211|RELT-like 1##NM_001085399|RELL1|768211|RELT-like 1##NM_001085400|RELL1|768211|RELT-like 1##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1	0.0	0.0	
chr4	54407722	54407902	reg1010932.p1	4.270	+	TSC_hg19_v1_chr4_+_54292052 BC026724	-115741	+	TSC_hg19_v1_chr4_+_54243915 BC024016 BC052959 AB463043 AM392758 AY229892 AK300398 AK308145	-163853	+	TSC_hg19_v1_chr4_+_54243829 BC017724 AL136910 AY366510	-163948	+	AY358326 TSC_hg19_v1_chr4_-_54424350 BC034737	16538	-	AF237782 TSC_hg19_v1_chr4_-_54424379 AK294611	16566	-	TSC_hg19_v1_chr4_-_54424402 NM_032622	16606	-	BC026724|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##BC024016|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##BC052959|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AM392758|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AK300398|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AK308145|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##BC017724|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AL136910|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AY366510|FIP1L1|81608|FIP1 like 1 (S. cerevisiae)##AY358326|LNX1|84708|ligand of numb-protein X 1##BC034737|LNX1|84708|ligand of numb-protein X 1##AF237782|LNX1|84708|ligand of numb-protein X 1##AK294611|LNX1|84708|ligand of numb-protein X 1##NM_032622|LNX1|84708|ligand of numb-protein X 1	0.0	0.0	
chr6	38656108	38656282	reg1010068.p1	4.270	+	NM_001099272 NM_052893	-48272	-	TSC_hg19_v1_chr6_-_38607697 BX537534	-48529	-	AB067467 TSC_hg19_v1_chr6_-_38607611	-48590	-	BT019987 BT019988 CU674854 S83285 TSC_hg19_v1_chr6_-_38670850 AB209801 AK130312	14645	-	TSC_hg19_v1_chr6_-_38670880 BC015934	14680	-	TSC_hg19_v1_chr6_-_38670886 AK129573 L07837 BC001741 AL833442	14697	-	NM_001099272|BTBD9|114781|BTB (POZ) domain containing 9##NM_052893|BTBD9|114781|BTB (POZ) domain containing 9##BX537534|BTBD9|114781|BTB (POZ) domain containing 9##AB067467|BTBD9|114781|BTB (POZ) domain containing 9##BT019987|GLO1|2739|glyoxalase I##BT019988|GLO1|2739|glyoxalase I##S83285|GLO1|2739|glyoxalase I##AB209801|GLO1|2739|glyoxalase I##AK130312|GLO1|2739|glyoxalase I##BC015934|GLO1|2739|glyoxalase I##AK129573|GLO1|2739|glyoxalase I##L07837|GLO1|2739|glyoxalase I##BC001741|GLO1|2739|glyoxalase I##AL833442|GLO1|2739|glyoxalase I	0.988434	0.0	denovo_WM_7:3:0.326	denovo_WM_7:4:0.323	denovo_WM_7:5:0.340
chr7	123741382	123741526	reg1016160.p2	4.270	+	TSC_hg19_v1_chr7_-_123673486 NM_001136002	-67950	-	AK292229 NM_001174045 NM_001174046 AY920280 AY920281	-175534	+	NM_001174044 NM_003117 NM_153189 AY920278 AY920279 S67798 BC026163	-176128	+	AF502281 CU691802 AB464545 AF017262 TSC_hg19_v1_chr7_-_124405121	663621	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	664342	-	BC130600 BC130604 NM_001024603	689348	-	NM_001136002|TMEM229A|730130|transmembrane protein 229A##AK292229|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##NM_001174045|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##NM_001174046|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##AY920280|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##AY920281|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##NM_001174044|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##NM_003117|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##NM_153189|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##AY920278|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##AY920279|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##S67798|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##BC026163|SPAM1|6677|sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)##AF502281|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##AF017262|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872	0.717596	0.851278	denovo_WM_7:13:0.596	CTCF.p2:-18:0.851
chr9	32508258	32508390	reg1009441.p2	4.270	+	TSC_hg19_v1_chr9_+_32384682 BC018103	-123635	+	TSC_hg19_v1_chr9_+_32384648 AK308752 Z11559	-123675	+	TSC_hg19_v1_chr9_+_32384622 AK057904	-123697	+	AB385150 TSC_hg19_v1_chr9_-_32526215 AK301678 AK315040 BX647917 BC070029 BC132786 BC136610 AF038963 NM_014314 BC107731	17928	-	U82939 TSC_hg19_v1_chr9_-_32550876	42539	-	AB045732 AB045733 AF098300 TSC_hg19_v1_chr9_-_32552567 BC060884	44235	-	BC018103|ACO1|48|aconitase 1, soluble##AK308752|ACO1|48|aconitase 1, soluble##Z11559|ACO1|48|aconitase 1, soluble##AK057904|ACO1|48|aconitase 1, soluble##AK301678|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##AK315040|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BX647917|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC070029|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC132786|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC136610|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##AF038963|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##NM_014314|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##BC107731|DDX58|23586|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58##U82939|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##AB045732|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##AB045733|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##AF098300|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase##BC060884|TOPORS|10210|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase	0.995682	0.0	
chr17	42299417	42299505	reg1006617.p2	4.269	+	BC050302 TSC_hg19_v1_chr17_+_42299409	-116	+	AK292577 TSC_hg19_v1_chr17_-_42298971 AK292518	-524	-	TSC_hg19_v1_chr17_-_42298282 BC042297 NM_001076683	-1182	-	BC101574 BC101570 M27819 NM_000342 X12609 TSC_hg19_v1_chr17_-_42345504	46008	-	AL133657 NM_001144825 NM_001144826 NM_006695 TSC_hg19_v1_chr17_+_42385950 AB209802 AK226045 BC006194 AK313669 BX537443 AF055026 CR456748 CU675291 U93871	86529	+	TSC_hg19_v1_chr17_-_42402172 BC096819 BC009330 AK026060 AL133584 BC001398 AK289357 AK295478 AK301139	102705	-	AK292577|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292518|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC042297|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076683|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC101574|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##BC101570|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##M27819|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##NM_000342|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##X12609|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##AL133657|RUNDC3A|10900|RUN domain containing 3A##NM_001144825|RUNDC3A|10900|RUN domain containing 3A##NM_001144826|RUNDC3A|10900|RUN domain containing 3A##NM_006695|RUNDC3A|10900|RUN domain containing 3A##AB209802|RUNDC3A|10900|RUN domain containing 3A##AK226045|RUNDC3A|10900|RUN domain containing 3A##BC006194|RUNDC3A|10900|RUN domain containing 3A##AK313669|RUNDC3A|10900|RUN domain containing 3A##BX537443|RUNDC3A|10900|RUN domain containing 3A##AF055026|RUNDC3A|10900|RUN domain containing 3A##CR456748|RUNDC3A|10900|RUN domain containing 3A##U93871|RUNDC3A|10900|RUN domain containing 3A##BC096819|SLC25A39|51629|solute carrier family 25, member 39##BC009330|SLC25A39|51629|solute carrier family 25, member 39##AK026060|SLC25A39|51629|solute carrier family 25, member 39##AL133584|SLC25A39|51629|solute carrier family 25, member 39##BC001398|SLC25A39|51629|solute carrier family 25, member 39##AK289357|SLC25A39|51629|solute carrier family 25, member 39##AK295478|SLC25A39|51629|solute carrier family 25, member 39##AK301139|SLC25A39|51629|solute carrier family 25, member 39	0.0	0.0	
chr22	29641660	29641741	reg1012836.p1	4.269	+	TSC_hg19_v1_chr22_+_29601914 BC046358 NM_133455 CR456407 CU012965 CU013253 AB463024 AJ416090	-39808	+	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	-172678	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	-183851	-	TSC_hg19_v1_chr22_-_29663824 AL050346 NM_012265	22168	-	NM_001163285 NM_001163286 NM_001163287 NM_005243 NM_013986 TSC_hg19_v1_chr22_+_29664088	22347	+	TSC_hg19_v1_chr22_+_29664281 X66899 BC000527 AK127624 CR456490 AK225102 AK056309 BC004817 AK056681 AK225096 BC072442 AF254086 BC011048 AB463036 AF327066 CU013087 CU013375 CU679880 CU687234 EU487217	22577	+	BC046358|EMID1|129080|EMI domain containing 1##NM_133455|EMID1|129080|EMI domain containing 1##CR456407|EMID1|129080|EMI domain containing 1##CU012965|EMID1|129080|EMI domain containing 1##CU013253|EMID1|129080|EMI domain containing 1##AJ416090|EMID1|129080|EMI domain containing 1##BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##AL050346|RHBDD3|25807|rhomboid domain containing 3##NM_012265|RHBDD3|25807|rhomboid domain containing 3##NM_001163285|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163286|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163287|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_005243|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_013986|EWSR1|2130|Ewing sarcoma breakpoint region 1##X66899|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC000527|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK127624|EWSR1|2130|Ewing sarcoma breakpoint region 1##CR456490|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK225102|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK056309|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC004817|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK056681|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK225096|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC072442|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC011048|EWSR1|2130|Ewing sarcoma breakpoint region 1##AF327066|EWSR1|2130|Ewing sarcoma breakpoint region 1##CU013087|EWSR1|2130|Ewing sarcoma breakpoint region 1##CU013375|EWSR1|2130|Ewing sarcoma breakpoint region 1	0.0	0.973417	CTCF.p2:7:0.973
chr3	196190157	196190337	reg1011230.p2	4.269	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-30914	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-30948	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-30964	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	40331	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	51966	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	105143	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.0	0.0	
chr7	104640119	104640210	reg1012310.p2	4.269	+	TSC_hg19_v1_chr7_-_104567089 BC050337	-73074	-	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-670946	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-791733	-	TSC_hg19_v1_chr7_-_104653491 AK124046	13318	-	TSC_hg19_v1_chr7_-_104654062 AK094372	13910	-	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	14338	-	BC050337|LOC723809|723809|uncharacterized LOC723809##AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545	0.0	0.0	
chr8	8705895	8706019	reg1010678.p1	4.269	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	-146259	+	AK122582 NM_001080826	-466735	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-530069	-	TSC_hg19_v1_chr8_-_8751060 NM_004225	44981	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	154408	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	154548	+	AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1	0.991021	0.0	denovo_WM_7:-40:0.419	denovo_WM_7:-41:0.419
chr10	94725065	94725193	reg1014917.p2	4.268	+	AK293857 NM_019053 AF220217 TSC_hg19_v1_chr10_+_94608276 AL832501 EF571007 AK315544 BC028395 CU688490 EU832839 GQ129240	-116872	+	NM_001013848	-130660	+	TSC_hg19_v1_chr10_+_94449711 NM_002729 AK309463 AK314891 BC014336 BC015110 L16499 X67235 AB528006 BC050638 EU446478	-275420	+	AY356349 NM_183374	95891	+	AK027560 NM_057157	108102	+	AK075374 NM_000783 AF005418	108527	+	AK293857|EXOC6|54536|exocyst complex component 6##NM_019053|EXOC6|54536|exocyst complex component 6##AF220217|EXOC6|54536|exocyst complex component 6##AL832501|EXOC6|54536|exocyst complex component 6##EF571007|EXOC6|54536|exocyst complex component 6##AK315544|EXOC6|54536|exocyst complex component 6##BC028395|EXOC6|54536|exocyst complex component 6##EU832839|EXOC6|54536|exocyst complex component 6##GQ129240|EXOC6|54536|exocyst complex component 6##NM_001013848|EXOC6|54536|exocyst complex component 6##NM_002729|HHEX|3087|hematopoietically expressed homeobox##AK314891|HHEX|3087|hematopoietically expressed homeobox##BC014336|HHEX|3087|hematopoietically expressed homeobox##BC015110|HHEX|3087|hematopoietically expressed homeobox##L16499|HHEX|3087|hematopoietically expressed homeobox##X67235|HHEX|3087|hematopoietically expressed homeobox##BC050638|HHEX|3087|hematopoietically expressed homeobox##EU446478|HHEX|3087|hematopoietically expressed homeobox##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##AK027560|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_057157|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AK075374|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_000783|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AF005418|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1	0.0	0.99614	CTCF.p2:36:0.996
chr12	101739739	101739854	reg1012546.p1	4.268	+	TSC_hg19_v1_chr12_+_101673904 NM_014503 AK307934 AJ006778	-65891	+	AK313788 AF536216 AY081220 NM_145913	-135797	-	NM_178826 TSC_hg19_v1_chr12_+_101188522 AK091591 AX747079 AK316105 AK293810	-551242	+	TSC_hg19_v1_chr12_-_101801573 AK311793 AK302911 AK299062 BC007000 BX537387 NM_001177	61747	-	AK296681 NM_002465 NM_206819 NM_206820 NM_206821 AK056587 AK292976 AK295727 AK303401 BC015187 BC030980 BC065720 TSC_hg19_v1_chr12_+_101988748 BC092418 X66276 X73114 AL831993 AL832000 AL832332 AL832350 AL832354 AL832456 BC117217 BC143495 BC143502 BC143503 BC143504 AL834249 BX649073 AB385254 AM392734 EU831907 EU832001	249000	+	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	351826	+	NM_014503|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK307934|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AJ006778|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK313788|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AF536216|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##AY081220|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##NM_145913|SLC5A8|160728|solute carrier family 5 (iodide transporter), member 8##NM_178826|ANO4|121601|anoctamin 4##AK091591|ANO4|121601|anoctamin 4##AK316105|ANO4|121601|anoctamin 4##AK293810|ANO4|121601|anoctamin 4##AK311793|ARL1|400|ADP-ribosylation factor-like 1##AK302911|ARL1|400|ADP-ribosylation factor-like 1##AK299062|ARL1|400|ADP-ribosylation factor-like 1##BC007000|ARL1|400|ADP-ribosylation factor-like 1##BX537387|ARL1|400|ADP-ribosylation factor-like 1##NM_001177|ARL1|400|ADP-ribosylation factor-like 1##AK296681|MYBPC1|4604|myosin binding protein C, slow type##NM_002465|MYBPC1|4604|myosin binding protein C, slow type##NM_206819|MYBPC1|4604|myosin binding protein C, slow type##NM_206820|MYBPC1|4604|myosin binding protein C, slow type##NM_206821|MYBPC1|4604|myosin binding protein C, slow type##AK056587|MYBPC1|4604|myosin binding protein C, slow type##AK292976|MYBPC1|4604|myosin binding protein C, slow type##AK295727|MYBPC1|4604|myosin binding protein C, slow type##AK303401|MYBPC1|4604|myosin binding protein C, slow type##BC015187|MYBPC1|4604|myosin binding protein C, slow type##BC030980|MYBPC1|4604|myosin binding protein C, slow type##BC065720|MYBPC1|4604|myosin binding protein C, slow type##BC092418|MYBPC1|4604|myosin binding protein C, slow type##X66276|MYBPC1|4604|myosin binding protein C, slow type##X73114|MYBPC1|4604|myosin binding protein C, slow type##AL831993|MYBPC1|4604|myosin binding protein C, slow type##AL832000|MYBPC1|4604|myosin binding protein C, slow type##AL832332|MYBPC1|4604|myosin binding protein C, slow type##AL832350|MYBPC1|4604|myosin binding protein C, slow type##AL832354|MYBPC1|4604|myosin binding protein C, slow type##AL832456|MYBPC1|4604|myosin binding protein C, slow type##BC117217|MYBPC1|4604|myosin binding protein C, slow type##BC143495|MYBPC1|4604|myosin binding protein C, slow type##BC143502|MYBPC1|4604|myosin binding protein C, slow type##BC143503|MYBPC1|4604|myosin binding protein C, slow type##BC143504|MYBPC1|4604|myosin binding protein C, slow type##AL834249|MYBPC1|4604|myosin binding protein C, slow type##BX649073|MYBPC1|4604|myosin binding protein C, slow type##AM392734|MYBPC1|4604|myosin binding protein C, slow type##EU831907|MYBPC1|4604|myosin binding protein C, slow type##EU832001|MYBPC1|4604|myosin binding protein C, slow type##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1	0.972653	0.0	denovo_WM_7:42:0.949
chr12	50555444	50555565	reg1015636.p1	4.268	+	TSC_hg19_v1_chr12_+_50506018 BC007849 NM_032901 AK312180	-49588	+	AK130162 TSC_hg19_v1_chr12_+_50497790 BC032234 NM_005276 AK295911 L34041 AK312516 DQ890626 DQ893793 CU689308	-57693	+	TSC_hg19_v1_chr12_+_50479124 AK292700 AK293932 AK130517 AB527887 CU679327 EU447009 BC000063 AF109733	-76391	+	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	5587	-	TSC_hg19_v1_chr12_-_50561112 AK026014	5621	-	TSC_hg19_v1_chr12_-_50561153 AK298924	5721	-	BC007849|C12orf62|84987|chromosome 12 open reading frame 62##NM_032901|C12orf62|84987|chromosome 12 open reading frame 62##AK312180|C12orf62|84987|chromosome 12 open reading frame 62##AK130162|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##BC032234|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##NM_005276|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK295911|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##L34041|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK312516|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ890626|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ893793|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK292700|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK293932|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130517|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##EU447009|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC000063|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AF109733|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5##AK298924|CERS5|91012|ceramide synthase 5	0.976949	0.0	denovo_WM_7:71:0.419	denovo_WM_7:72:0.419
chr14	47754055	47754149	reg1017453.p1	4.268	+	AM392934 AB528225 AB063608 BC066312 AK130863 BC014310 NM_080746	-633119	-	AB067490 NM_018353 TSC_hg19_v1_chr14_-_45722681	-2031456	-	TSC_hg19_v1_chr14_-_45722374 BC051885 BC065544 AK002048	-2031735	-	BC028193 NM_182830	58313	-	AK309211 NM_001113498	390054	-	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	2298991	-	AM392934|RPL10L|140801|ribosomal protein L10-like##AB063608|RPL10L|140801|ribosomal protein L10-like##BC066312|RPL10L|140801|ribosomal protein L10-like##AK130863|RPL10L|140801|ribosomal protein L10-like##BC014310|RPL10L|140801|ribosomal protein L10-like##NM_080746|RPL10L|140801|ribosomal protein L10-like##AB067490|MIS18BP1|55320|MIS18 binding protein 1##NM_018353|MIS18BP1|55320|MIS18 binding protein 1##BC051885|MIS18BP1|55320|MIS18 binding protein 1##BC065544|MIS18BP1|55320|MIS18 binding protein 1##AK002048|MIS18BP1|55320|MIS18 binding protein 1##BC028193|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_182830|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29	0.0	0.0	
chr16	21610603	21610741	reg1006884.p1	4.268	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-78920	-	BC036263 NM_130464	-174015	-	BX648477 NM_001014444 NM_001888	-296285	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	218	+	AF151839 TSC_hg19_v1_chr16_+_21611174	482	+	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	53248	-	BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6	0.0	0.0	
chr2	109245941	109246068	reg1014558.p1	4.268	+	TSC_hg19_v1_chr2_+_109237706 AK304260 NM_001193484 AF527760 AK310547	-8301	+	TSC_hg19_v1_chr2_+_109223602 AF527762 NM_001193482	-22387	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	-41035	+	AF527759 NM_001193485	25263	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	25484	+	TSC_hg19_v1_chr2_+_109335970 D42063 NM_006267	89934	+	AK304260|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193484|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527760|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK310547|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527762|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193482|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527759|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193485|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3##D42063|RANBP2|5903|RAN binding protein 2##NM_006267|RANBP2|5903|RAN binding protein 2	0.0	0.0	
chr2	133736531	133736642	reg1002619.p1	4.268	+	AK124659 TSC_hg19_v1_chr2_-_133539761	-196892	-	NM_001077427 AK309668	-307476	-	NM_144586	-308106	-	TSC_hg19_v1_chr2_-_134179377 AK092189 AX747399	442768	-	AK057980 NM_207363 NM_207481 TSC_hg19_v1_chr2_-_134326043	589452	-	NM_002410 D17716 AF113921	1275299	+	AK124659|NCKAP5|344148|NCK-associated protein 5##NM_001077427|LYPD1|116372|LY6/PLAUR domain containing 1##AK309668|LYPD1|116372|LY6/PLAUR domain containing 1##NM_144586|LYPD1|116372|LY6/PLAUR domain containing 1##AK092189|NCKAP5|344148|NCK-associated protein 5##AK057980|NCKAP5|344148|NCK-associated protein 5##NM_207363|NCKAP5|344148|NCK-associated protein 5##NM_207481|NCKAP5|344148|NCK-associated protein 5##NM_002410|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##D17716|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase##AF113921|MGAT5|4249|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase	0.0	0.0	
chr21	47703538	47703604	reg1014243.p1	4.268	+	TSC_hg19_v1_chr21_+_47649138 AF426263 AK001370 BC047759 BC002458 BC059792 AF426262	-54448	+	TSC_hg19_v1_chr21_-_47648720 NM_001001438 NM_001145436 NM_001145437 NM_002340	-54842	-	TSC_hg19_v1_chr21_-_47648692 AK312489 AK296313	-54874	-	AK304208 TSC_hg19_v1_chr21_-_47704200	612	-	AJ010089 NM_003906 BC104958 BC104960	1684	-	TSC_hg19_v1_chr21_+_47706255 AK294975 NM_001006114 NM_058181	2678	+	AF426263|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##AK001370|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##BC047759|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##BC002458|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##BC059792|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##AF426262|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##NM_001001438|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##NM_001145436|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##NM_001145437|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##NM_002340|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK312489|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK296313|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK304208|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##AJ010089|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##NM_003906|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##BC104958|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##BC104960|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##AK294975|YBEY|54059|ybeY metallopeptidase (putative)##NM_001006114|YBEY|54059|ybeY metallopeptidase (putative)##NM_058181|YBEY|54059|ybeY metallopeptidase (putative)	0.0	0.0	
chr8	23083121	23083301	reg1001026.p4	4.268	+	TSC_hg19_v1_chr8_-_23082664 NM_003844	-545	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	-599	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-61716	-	AK097202 NM_152272 BC042050	17947	+	TSC_hg19_v1_chr8_+_23104147 AK315664 AK021776	20924	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	21031	+	NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7##AK315664|CHMP7|91782|charged multivesicular body protein 7##AK021776|CHMP7|91782|charged multivesicular body protein 7##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7	0.539289	0.0	denovo_WM_7:-39:0.385
chr10	109774710	109774804	reg1003354.p1	4.267	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-850381	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1315698	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3373712	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1908452	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1908520	-	NM_019903 AB209810 BC057285	1991024	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	0.0	0.0	
chr1	12142587	12142733	reg1010904.p2	4.267	+	M83554 NM_001243 BC136400 BC171762 S75768	-19116	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-63090	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-63126	+	D86042 BC063482 NM_152942 BC073839 BC141804	43356	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	84401	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	84451	+	M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	1.653709	0.0	denovo_WM_7:-28:0.212	denovo_WM_7:-29:0.279	denovo_WM_7:-43:0.262	denovo_WM_7:-44:0.307	denovo_WM_7:-45:0.271
chr2	38079133	38079270	reg1007483.p2	4.267	+	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	-179812	-	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	-180422	-	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-507388	+	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	73231	+	BC024243 NM_001170792	76700	+	NM_001170793 NM_144713 AK057516 AF435956	98399	+	AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1##BC024243|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170792|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170793|FAM82A1|151393|family with sequence similarity 82, member A1##NM_144713|FAM82A1|151393|family with sequence similarity 82, member A1##AK057516|FAM82A1|151393|family with sequence similarity 82, member A1##AF435956|FAM82A1|151393|family with sequence similarity 82, member A1	0.0	0.0	
chr2	47171522	47171634	reg1004442.p2	4.267	+	TSC_hg19_v1_chr2_-_47168913 NM_001171508 NM_001171511	-2631	-	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	-2705	-	TSC_hg19_v1_chr2_+_47168400 BC047709 BC111487	-3175	+	AK097491 NM_001163561 NM_173649	210892	-	TSC_hg19_v1_chr2_-_47403624 M19311 BC003354 BC006464	232048	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	232072	-	NM_001171508|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171511|MCFD2|90411|multiple coagulation factor deficiency 2##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2##BC111487|TTC7A|57217|tetratricopeptide repeat domain 7A##AK097491|C2orf61|285051|chromosome 2 open reading frame 61##NM_001163561|C2orf61|285051|chromosome 2 open reading frame 61##NM_173649|C2orf61|285051|chromosome 2 open reading frame 61##M19311|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC003354|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC006464|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)	0.998306	0.0	
chr2	69983397	69983504	reg1014275.p1	4.267	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	-14185	+	BC063672 NM_001153 BC000182 TSC_hg19_v1_chr2_+_69969232 AK293177	-14280	+	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	-112358	-	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	73357	+	TSC_hg19_v1_chr2_+_70056924 AB527982 EU832645 EU832722 CU675651	73521	+	NM_006857 TSC_hg19_v1_chr2_+_70121093 BC017890 X76302 AK291128 AK312041 CU676102	137649	+	BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##BC063672|ANXA4|307|annexin A4##NM_001153|ANXA4|307|annexin A4##BC000182|ANXA4|307|annexin A4##AK293177|ANXA4|307|annexin A4##NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832645|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832722|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_006857|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##BC017890|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##X76302|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK291128|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK312041|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)	0.0	0.0	
chr3	186501232	186501403	reg1011080.p1	4.267	+	NM_000893 NM_001102416 NM_001166451 AK303768 AK298440 AK315230 AK290839 BC060039 TSC_hg19_v1_chr3_+_186435263 K02566 BC026253 CU687392	-66104	+	AK313381 BC069574 NM_000412 BC150591	-117533	+	AF534529 AJ242928 NM_014375 AB017551 BC069670 BC069820 BC114616 BC074734 AY373820 AY373821 AK309647	-143052	+	NM_001967 TSC_hg19_v1_chr3_+_186501365 AK130087 AK225646 BC012547 BC015842 BC048105 AL117412 BC013708 BC006469 D30655 S79942 AF208852 AB590233 CU677469 CU680354 CU690550 DQ891738 DQ894914 BT009860	62	+	BC017452 BC024022 TSC_hg19_v1_chr3_-_186524253 AK297282 NM_002916	22946	-	NM_181573	23166	-	NM_000893|KNG1|3827|kininogen 1##NM_001102416|KNG1|3827|kininogen 1##NM_001166451|KNG1|3827|kininogen 1##AK303768|KNG1|3827|kininogen 1##AK298440|KNG1|3827|kininogen 1##AK315230|KNG1|3827|kininogen 1##AK290839|KNG1|3827|kininogen 1##BC060039|KNG1|3827|kininogen 1##K02566|KNG1|3827|kininogen 1##BC026253|KNG1|3827|kininogen 1##AK313381|HRG|3273|histidine-rich glycoprotein##BC069574|HRG|3273|histidine-rich glycoprotein##NM_000412|HRG|3273|histidine-rich glycoprotein##BC150591|HRG|3273|histidine-rich glycoprotein##AF534529|FETUB|26998|fetuin B##AJ242928|FETUB|26998|fetuin B##NM_014375|FETUB|26998|fetuin B##AB017551|FETUB|26998|fetuin B##BC069670|FETUB|26998|fetuin B##BC069820|FETUB|26998|fetuin B##BC114616|FETUB|26998|fetuin B##BC074734|FETUB|26998|fetuin B##AY373820|FETUB|26998|fetuin B##AY373821|FETUB|26998|fetuin B##AK309647|FETUB|26998|fetuin B##NM_001967|EIF4A2|1974|eukaryotic translation initiation factor 4A2##AK130087|EIF4A2|1974|eukaryotic translation initiation factor 4A2##AK225646|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BC012547|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BC015842|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BC048105|EIF4A2|1974|eukaryotic translation initiation factor 4A2##AL117412|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BC013708|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BC006469|EIF4A2|1974|eukaryotic translation initiation factor 4A2##D30655|EIF4A2|1974|eukaryotic translation initiation factor 4A2##S79942|EIF4A2|1974|eukaryotic translation initiation factor 4A2##AF208852|EIF4A2|1974|eukaryotic translation initiation factor 4A2##DQ891738|EIF4A2|1974|eukaryotic translation initiation factor 4A2##DQ894914|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BT009860|EIF4A2|1974|eukaryotic translation initiation factor 4A2##BC017452|RFC4|5984|replication factor C (activator 1) 4, 37kDa##BC024022|RFC4|5984|replication factor C (activator 1) 4, 37kDa##AK297282|RFC4|5984|replication factor C (activator 1) 4, 37kDa##NM_002916|RFC4|5984|replication factor C (activator 1) 4, 37kDa##NM_181573|RFC4|5984|replication factor C (activator 1) 4, 37kDa	0.0	0.0	
chr5	118703802	118703982	reg1004877.p2	4.267	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	-12154	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	-12274	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-99375	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	84304	+	AF427126 AY692447 NM_001163991 NM_182761 BC040622 BC128242 BC128243	261424	+	BC011941 TSC_hg19_v1_chr5_-_119740564	1036658	-	AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AF427126|FAM170A|340069|family with sequence similarity 170, member A##AY692447|FAM170A|340069|family with sequence similarity 170, member A##NM_001163991|FAM170A|340069|family with sequence similarity 170, member A##NM_182761|FAM170A|340069|family with sequence similarity 170, member A##BC040622|FAM170A|340069|family with sequence similarity 170, member A##BC128242|FAM170A|340069|family with sequence similarity 170, member A##BC128243|FAM170A|340069|family with sequence similarity 170, member A	0.0	0.0	
chr13	38741794	38741905	reg1012221.p2	4.266	+	BC104725 BC105306 BC105641 BC105917 AK312524 AF175406 AF063822 AF063823 AF063824 AF063825 NM_001135955 NM_001135956 NM_001135957 NM_001135958 NM_003306 NM_016179	-297951	-	EU262883 EU262884 EU262885 EU262886 AY140646 AY918092 BC106709 BC106710 D13666 GU354210 D13665 TSC_hg19_v1_chr13_-_38172906 NM_001135934 NM_001135935 NM_001135936 NM_006475	-568928	-	BC028723 NM_145203	-1062049	-	NM_016617 TSC_hg19_v1_chr13_+_38923946	182102	+	TSC_hg19_v1_chr13_+_38923995 AK095490 AK307111 BC005193 Z70222 AF208844 AK309914 AB154404 CR457189	182200	+	NM_207361	519323	+	BC104725|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105306|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105641|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##BC105917|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AK312524|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF175406|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063822|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063823|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063824|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##AF063825|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135955|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135956|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135957|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_001135958|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_003306|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##NM_016179|TRPC4|7223|transient receptor potential cation channel, subfamily C, member 4##EU262883|POSTN|10631|periostin, osteoblast specific factor##EU262884|POSTN|10631|periostin, osteoblast specific factor##EU262885|POSTN|10631|periostin, osteoblast specific factor##EU262886|POSTN|10631|periostin, osteoblast specific factor##AY140646|POSTN|10631|periostin, osteoblast specific factor##AY918092|POSTN|10631|periostin, osteoblast specific factor##BC106709|POSTN|10631|periostin, osteoblast specific factor##BC106710|POSTN|10631|periostin, osteoblast specific factor##D13666|POSTN|10631|periostin, osteoblast specific factor##GU354210|POSTN|10631|periostin, osteoblast specific factor##D13665|POSTN|10631|periostin, osteoblast specific factor##NM_001135934|POSTN|10631|periostin, osteoblast specific factor##NM_001135935|POSTN|10631|periostin, osteoblast specific factor##NM_001135936|POSTN|10631|periostin, osteoblast specific factor##NM_006475|POSTN|10631|periostin, osteoblast specific factor##BC028723|CSNK1A1L|122011|casein kinase 1, alpha 1-like##NM_145203|CSNK1A1L|122011|casein kinase 1, alpha 1-like##NM_016617|UFM1|51569|ubiquitin-fold modifier 1##AK095490|UFM1|51569|ubiquitin-fold modifier 1##AK307111|UFM1|51569|ubiquitin-fold modifier 1##BC005193|UFM1|51569|ubiquitin-fold modifier 1##Z70222|UFM1|51569|ubiquitin-fold modifier 1##AF208844|UFM1|51569|ubiquitin-fold modifier 1##AK309914|UFM1|51569|ubiquitin-fold modifier 1##AB154404|UFM1|51569|ubiquitin-fold modifier 1##CR457189|UFM1|51569|ubiquitin-fold modifier 1##NM_207361|FREM2|341640|FRAS1 related extracellular matrix protein 2	0.0	0.0	
chr14	75430033	75430132	reg1012005.p1	4.266	+	BX248289 NM_001207012 NM_002632	-7616	-	TSC_hg19_v1_chr14_-_75389964 BC036574 AK226137 AK054800	-40129	-	NM_031464	-40938	-	NM_014239 TSC_hg19_v1_chr14_+_75469623 BX161473 BC000494 BC003165 AF035280 BC011750 CU680040 DQ891364 DQ894544 L40395	39579	+	AF195657 BC012544 TSC_hg19_v1_chr14_-_75518171 NM_001040108 NM_014381	88101	-	TSC_hg19_v1_chr14_-_75530719 BC035568 NM_001107 NM_203488 AK312101	100652	-	BX248289|PGF|5228|placental growth factor##NM_001207012|PGF|5228|placental growth factor##NM_002632|PGF|5228|placental growth factor##BC036574|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK226137|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##AK054800|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##NM_031464|RPS6KL1|83694|ribosomal protein S6 kinase-like 1##NM_014239|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BX161473|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC000494|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC003165|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##AF035280|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##BC011750|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##DQ891364|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##DQ894544|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##L40395|EIF2B2|8892|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa##AF195657|MLH3|27030|mutL homolog 3 (E. coli)##BC012544|MLH3|27030|mutL homolog 3 (E. coli)##NM_001040108|MLH3|27030|mutL homolog 3 (E. coli)##NM_014381|MLH3|27030|mutL homolog 3 (E. coli)##BC035568|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_001107|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##NM_203488|ACYP1|97|acylphosphatase 1, erythrocyte (common) type##AK312101|ACYP1|97|acylphosphatase 1, erythrocyte (common) type	0.963211	0.046796	denovo_WM_7:18:0.204	denovo_WM_7:19:0.528
chr19	40285624	40285804	reg1013547.p2	4.266	+	NM_001143832	-18481	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	-57075	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	-90671	+	TSC_hg19_v1_chr19_-_40324779 AF205861 BC025291 AK074971 BC009688 AK302127 BC018751 NM_004714 NM_006483 NM_006484 Y17999	39084	-	BC019609 BC015218 TSC_hg19_v1_chr19_-_40331308 AB451384 BT006830 BT020144 CR457069	45577	-	AB463635 M59849 TSC_hg19_v1_chr19_-_40336992	51254	-	NM_001143832|LEUTX|342900|leucine twenty homeobox##FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF205861|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC025291|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK074971|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC009688|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##AK302127|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC018751|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_004714|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006483|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##NM_006484|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##Y17999|DYRK1B|9149|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B##BC019609|FBL|2091|fibrillarin##BC015218|FBL|2091|fibrillarin##AB451384|FBL|2091|fibrillarin##BT006830|FBL|2091|fibrillarin##BT020144|FBL|2091|fibrillarin##CR457069|FBL|2091|fibrillarin##M59849|FBL|2091|fibrillarin	0.0	0.0	
chr2	24579097	24579215	reg1011709.p1	4.266	+	BC050462 NM_001040710	-181185	+	TSC_hg19_v1_chr2_+_24346339 NM_001145710	-232797	+	TSC_hg19_v1_chr2_-_24346174 BC029523 NM_199346 BC043236 AK292601	-232912	-	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	4324	-	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	228221	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	437082	-	BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##NM_001145710|LOC375190|375190|UPF0638 protein B##BC029523|PFN4|375189|profilin family, member 4##NM_199346|PFN4|375189|profilin family, member 4##BC043236|PFN4|375189|profilin family, member 4##AK292601|PFN4|375189|profilin family, member 4##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1	2.799774	0.0	denovo_WM_7:66:0.387	denovo_WM_7:67:0.280	denovo_WM_7:68:0.274	denovo_WM_7:-76:0.805	denovo_WM_7:85:0.598
chr7	17686421	17686503	reg1013207.p1	4.266	+	TSC_hg19_v1_chr7_+_17382906 BC021696	-303556	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-348193	+	AY359065 BC058284 NM_176813	-764858	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	293587	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	293665	-	BC062797 BC005309 M57423 NM_175886	381003	-	BC021696|AHR|196|aryl hydrocarbon receptor##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1	0.988987	0.083289	denovo_WM_7:15:0.904
chr8	134510458	134510524	reg1002142.p1	4.266	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-200994	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-307161	+	NM_001045556 NM_001045557	-395182	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	73606	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1198303	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1214588	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.0	0.014307	
chr11	35743633	35743765	reg1017040.p1	4.265	+	AB529107 CU680538 DQ891061 DQ894241 TSC_hg19_v1_chr11_+_35684686	-59026	+	TSC_hg19_v1_chr11_+_35684427 BC024031 AK074242 AJ249128	-59249	+	TSC_hg19_v1_chr11_+_35684404 BC013166 NM_017583	-59326	+	BC136286 BC143823 BC143824 TSC_hg19_v1_chr11_+_35965585 AK293930 AK075546 AK299186 NM_174902 BC042754	221912	+	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	567254	-	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	567287	-	DQ891061|TRIM44|54765|tripartite motif containing 44##DQ894241|TRIM44|54765|tripartite motif containing 44##BC024031|TRIM44|54765|tripartite motif containing 44##AK074242|TRIM44|54765|tripartite motif containing 44##AJ249128|TRIM44|54765|tripartite motif containing 44##BC013166|TRIM44|54765|tripartite motif containing 44##NM_017583|TRIM44|54765|tripartite motif containing 44##BC136286|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143823|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143824|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK293930|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK075546|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK299186|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##NM_174902|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC042754|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9	0.330203	0.0	denovo_WM_7:-2:0.314
chr1	145980425	145980491	reg1014850.p1	4.265	+	NM_001097616	-96591	+	BT006679 DQ890650 DQ893830 AB528816 TSC_hg19_v1_chr1_-_145827047 BC003187 AK316371 BC146880 AF132947 U78723 BC067816 AB097024 AB097025 AK223223 AK299995 AK302266 AY358966 AK021758 AK297145 NM_001097612 NM_001097613	-153442	-	TSC_hg19_v1_chr1_+_145727712 AK313100 AK298269 BC006496 BC006518 AF012281	-252739	+	AF419617 NM_001101663	87786	-	BC136292 NM_183372 AL832622	102240	-	AJ224538 HQ257946 TSC_hg19_v1_chr1_-_146643798	663307	-	NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##BT006679|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##AK297145|GPR89A|653519|G protein-coupled receptor 89A##NM_001097612|GPR89A|653519|G protein-coupled receptor 89A##NM_001097613|GPR89A|653519|G protein-coupled receptor 89A##AK313100|PDZK1|5174|PDZ domain containing 1##AK298269|PDZK1|5174|PDZ domain containing 1##BC006496|PDZK1|5174|PDZ domain containing 1##BC006518|PDZK1|5174|PDZ domain containing 1##AF012281|PDZK1|5174|PDZ domain containing 1##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11##AL832622|NBPF24|728912|neuroblastoma breakpoint family, member 24##AJ224538|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit##HQ257946|PRKAB2|5565|protein kinase, AMP-activated, beta 2 non-catalytic subunit	0.020296	0.0	
chr4	8223459	8223639	reg1006032.p2	4.265	+	TSC_hg19_v1_chr4_+_8201038 BC030283 AK074093 NM_018986 BC068094 AK074402 AK126165 BC131785	-22517	+	DQ413176 AJ748600 AJ748601 TSC_hg19_v1_chr4_-_8160541 BC122567 AK130044 AK094754 BC067214 NM_001130083 NM_001130084 NM_001130085 NM_001130086 NM_001130087 NM_001130088 NM_032432	-63015	-	TSC_hg19_v1_chr4_-_8129388 AK301060	-94164	-	TSC_hg19_v1_chr4_+_8271480 NM_053044 AY040094 BC034390 BC035717 AY280665 AY280666 AB528940 DQ891188 DQ894371	48026	+	TSC_hg19_v1_chr4_-_8430196 AK313242	206652	-	Y11411 BC017053 TSC_hg19_v1_chr4_-_8442447 AK225080 NM_001101667 NM_003501	218907	-	BC030283|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074093|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##NM_018986|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC068094|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074402|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK126165|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC131785|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##DQ413176|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748600|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748601|ABLIM2|84448|actin binding LIM protein family, member 2##BC122567|ABLIM2|84448|actin binding LIM protein family, member 2##AK130044|ABLIM2|84448|actin binding LIM protein family, member 2##AK094754|ABLIM2|84448|actin binding LIM protein family, member 2##BC067214|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130083|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130084|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130085|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130086|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130087|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130088|ABLIM2|84448|actin binding LIM protein family, member 2##NM_032432|ABLIM2|84448|actin binding LIM protein family, member 2##AK301060|ABLIM2|84448|actin binding LIM protein family, member 2##NM_053044|HTRA3|94031|HtrA serine peptidase 3##AY040094|HTRA3|94031|HtrA serine peptidase 3##BC034390|HTRA3|94031|HtrA serine peptidase 3##BC035717|HTRA3|94031|HtrA serine peptidase 3##AY280665|HTRA3|94031|HtrA serine peptidase 3##AY280666|HTRA3|94031|HtrA serine peptidase 3##DQ891188|HTRA3|94031|HtrA serine peptidase 3##DQ894371|HTRA3|94031|HtrA serine peptidase 3##AK313242|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##Y11411|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##BC017053|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##AK225080|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##NM_001101667|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl##NM_003501|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl	0.0	0.0	
chr7	41142722	41142902	reg1012380.p1	4.265	+	AK299133 TSC_hg19_v1_chr7_+_40174603 AK296048 AK308764 AK307935 AK298516	-968203	+	AF397013 TSC_hg19_v1_chr7_+_40174572 AK021870 NM_001193311 NM_001193312 NM_001193313 NM_024728 BC098117 BC098261 BC098310 BC098318	-968281	+	TSC_hg19_v1_chr7_-_40174219 BC026265 NM_138701	-968681	-	AF218018 AK290584 BC007858 D49743 TSC_hg19_v1_chr7_-_41742684 NM_002192	599873	-	NM_000168	1133805	-	TSC_hg19_v1_chr7_-_42276797 AK308429	1133983	-	AK299133|C7orf10|79783|chromosome 7 open reading frame 10##AK296048|C7orf10|79783|chromosome 7 open reading frame 10##AK308764|C7orf10|79783|chromosome 7 open reading frame 10##AK307935|C7orf10|79783|chromosome 7 open reading frame 10##AK298516|C7orf10|79783|chromosome 7 open reading frame 10##AF397013|C7orf10|79783|chromosome 7 open reading frame 10##AK021870|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193311|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193312|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193313|C7orf10|79783|chromosome 7 open reading frame 10##NM_024728|C7orf10|79783|chromosome 7 open reading frame 10##BC098117|C7orf10|79783|chromosome 7 open reading frame 10##BC098261|C7orf10|79783|chromosome 7 open reading frame 10##BC098310|C7orf10|79783|chromosome 7 open reading frame 10##BC098318|C7orf10|79783|chromosome 7 open reading frame 10##BC026265|C7orf11|136647|chromosome 7 open reading frame 11##NM_138701|C7orf11|136647|chromosome 7 open reading frame 11##AF218018|INHBA|3624|inhibin, beta A##AK290584|INHBA|3624|inhibin, beta A##BC007858|INHBA|3624|inhibin, beta A##D49743|INHBA|3624|inhibin, beta A##NM_002192|INHBA|3624|inhibin, beta A##NM_000168|GLI3|2737|GLI family zinc finger 3##AK308429|GLI3|2737|GLI family zinc finger 3	1.975629	0.0	denovo_WM_7:-22:0.272	denovo_WM_7:-23:0.705	denovo_WM_7:-38:0.839
chr12	31811738	31811918	reg1005896.p1	4.264	+	AK290248 NM_001135864	-11735	+	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	-67910	-	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-332689	-	BC039535 NM_173802	292	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	786	+	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	70146	-	AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)	0.993257	0.0	
chr19	47805787	47805886	reg1003908.p2	4.264	+	TSC_hg19_v1_chr19_+_47778141 BC022076 BC045749 NM_178511 BC064510	-27700	+	TSC_hg19_v1_chr19_+_47759811 BC002787 BC009743	-46018	+	NM_015603 AK302153 TSC_hg19_v1_chr19_+_47759781 AL050284	-46075	+	BC008982 NM_001736 TSC_hg19_v1_chr19_+_47813117 M62505	7266	+	AB038237 NM_018485	34534	+	NM_014681 TSC_hg19_v1_chr19_+_47852571 AK304710	46733	+	BC022076|PRR24|255783|proline rich 24##BC045749|PRR24|255783|proline rich 24##NM_178511|PRR24|255783|proline rich 24##BC064510|PRR24|255783|proline rich 24##BC002787|CCDC9|26093|coiled-coil domain containing 9##BC009743|CCDC9|26093|coiled-coil domain containing 9##NM_015603|CCDC9|26093|coiled-coil domain containing 9##AK302153|CCDC9|26093|coiled-coil domain containing 9##AL050284|CCDC9|26093|coiled-coil domain containing 9##BC008982|C5AR1|728|complement component 5a receptor 1##NM_001736|C5AR1|728|complement component 5a receptor 1##M62505|C5AR1|728|complement component 5a receptor 1##AB038237|GPR77|27202|G protein-coupled receptor 77##NM_018485|GPR77|27202|G protein-coupled receptor 77##NM_014681|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34##AK304710|DHX34|9704|DEAH (Asp-Glu-Ala-His) box polypeptide 34	0.996151	0.012855	denovo_WM_7:-28:0.214	denovo_WM_7:-30:0.669
chr3	27771756	27771854	reg1011482.p1	4.264	+	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	-7604	-	AB031038 BC131712 NM_005442 AB463608 BC037568	-8012	-	TSC_hg19_v1_chr3_-_27525893 AK309734	-245875	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	511293	+	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	618577	-	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	618756	-	AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2	0.991071	0.0	denovo_WM_7:18:0.896
chr8	130898082	130898176	reg1006085.p2	4.264	+	AB042405 NM_031415	-98996	-	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-2091346	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-2149639	+	BC003599 TSC_hg19_v1_chr8_-_130951934	53786	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	53877	-	BC016345 TSC_hg19_v1_chr8_-_131028667	130530	-	AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B	0.980392	0.0	denovo_WM_7:-32:0.949
chr11	22184788	22184928	reg1003485.p1	4.263	+	AK127805 AK299558 NM_006157 NM_201551 AK313445 AK303736 D83017 BC069674 BC096100 BC096101 BC096102 BC096103 CU686968	-1493666	+	NM_004211 AF085412	-1563911	+	BC047226 TSC_hg19_v1_chr11_+_20409261 AK301449 AK298185 AK300591 BC037544 AB590779 EU831425 EU831518	-1775598	+	TSC_hg19_v1_chr11_+_22214577 AB125267 AL832374 AL833271 NM_001142649 NM_213599	29789	+	AB032435 NM_020346	174808	+	TSC_hg19_v1_chr11_-_22647372 AF181995 AB464520 BC047028 AF181994 AK223277 AK001716 AK023153 BX640996 BC093867 BC101807 BC035346 BC063038 NM_022725	462503	-	AK127805|NELL1|4745|NEL-like 1 (chicken)##AK299558|NELL1|4745|NEL-like 1 (chicken)##NM_006157|NELL1|4745|NEL-like 1 (chicken)##NM_201551|NELL1|4745|NEL-like 1 (chicken)##AK313445|NELL1|4745|NEL-like 1 (chicken)##AK303736|NELL1|4745|NEL-like 1 (chicken)##D83017|NELL1|4745|NEL-like 1 (chicken)##BC069674|NELL1|4745|NEL-like 1 (chicken)##BC096100|NELL1|4745|NEL-like 1 (chicken)##BC096101|NELL1|4745|NEL-like 1 (chicken)##BC096102|NELL1|4745|NEL-like 1 (chicken)##BC096103|NELL1|4745|NEL-like 1 (chicken)##NM_004211|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AF085412|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##BC047226|PRMT3|10196|protein arginine methyltransferase 3##AK301449|PRMT3|10196|protein arginine methyltransferase 3##AK298185|PRMT3|10196|protein arginine methyltransferase 3##AK300591|PRMT3|10196|protein arginine methyltransferase 3##BC037544|PRMT3|10196|protein arginine methyltransferase 3##EU831425|PRMT3|10196|protein arginine methyltransferase 3##EU831518|PRMT3|10196|protein arginine methyltransferase 3##AB125267|ANO5|203859|anoctamin 5##AL832374|ANO5|203859|anoctamin 5##AL833271|ANO5|203859|anoctamin 5##NM_001142649|ANO5|203859|anoctamin 5##NM_213599|ANO5|203859|anoctamin 5##AB032435|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##NM_020346|SLC17A6|57084|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6##AF181995|FANCF|2188|Fanconi anemia, complementation group F##BC047028|FANCF|2188|Fanconi anemia, complementation group F##AF181994|FANCF|2188|Fanconi anemia, complementation group F##AK223277|FANCF|2188|Fanconi anemia, complementation group F##AK001716|FANCF|2188|Fanconi anemia, complementation group F##AK023153|FANCF|2188|Fanconi anemia, complementation group F##BX640996|FANCF|2188|Fanconi anemia, complementation group F##BC093867|FANCF|2188|Fanconi anemia, complementation group F##BC101807|FANCF|2188|Fanconi anemia, complementation group F##BC063038|FANCF|2188|Fanconi anemia, complementation group F##NM_022725|FANCF|2188|Fanconi anemia, complementation group F	0.523383	0.0	
chr14	50811095	50811253	reg1012533.p2	4.263	+	TSC_hg19_v1_chr14_+_50779043 BC011549 NM_001003803 NM_001003805 NM_015684 AF052186 U79253	-32133	+	TSC_hg19_v1_chr14_-_50778948 CU675259 AY757363 BC006117 AK309294 AK022680 AK292627 NM_024884	-32294	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	-113074	-	BC104977 NM_004196	51442	-	TSC_hg19_v1_chr14_-_50999306 BC036013 NM_006575 NM_198794 U77129	188136	-	NM_001127713	188625	+	BC011549|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003803|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003805|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_015684|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AF052186|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##U79253|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AY757363|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC006117|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK309294|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK022680|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK292627|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##NM_024884|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC104977|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##NM_004196|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##BC036013|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_006575|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_198794|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##U77129|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_001127713|ATL1|51062|atlastin GTPase 1	0.996892	0.0	
chr15	82960245	82960425	reg1014326.p1	4.263	+	BC007811 TSC_hg19_v1_chr15_+_82944831 BC065260 AK311124 AK311170 AK026448	-15445	+	AK309746 AK310769 BC072390 TSC_hg19_v1_chr15_+_82944804 AK291684 AK309420 AK309732 AK307285	-15543	+	BC009407 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	-135442	-	CR936602 NM_001164465	57843	-	NM_198181 CR936812	138406	+	BC009407 BC020453 BC019899 BC071928 M13932 AB055777 AK311951 BC070222 BC022370 NM_001021 NM_001199057 BC062715	248901	-	BC007811|AGSK1|80154|golgin subfamily A member 2-like##BC065260|AGSK1|80154|golgin subfamily A member 2-like##AK311124|AGSK1|80154|golgin subfamily A member 2-like##AK311170|AGSK1|80154|golgin subfamily A member 2-like##AK026448|AGSK1|80154|golgin subfamily A member 2-like##AK309746|AGSK1|80154|golgin subfamily A member 2-like##AK310769|AGSK1|80154|golgin subfamily A member 2-like##BC072390|AGSK1|80154|golgin subfamily A member 2-like##AK291684|AGSK1|80154|golgin subfamily A member 2-like##AK309420|AGSK1|80154|golgin subfamily A member 2-like##AK309732|AGSK1|80154|golgin subfamily A member 2-like##AK307285|AGSK1|80154|golgin subfamily A member 2-like##BC009407|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17##CR936602|LOC643696|643696|uncharacterized LOC643696##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9##BC009407|RPS17|6218|ribosomal protein S17##BC020453|RPS17|6218|ribosomal protein S17##BC019899|RPS17|6218|ribosomal protein S17##BC071928|RPS17|6218|ribosomal protein S17##M13932|RPS17|6218|ribosomal protein S17##AK311951|RPS17|6218|ribosomal protein S17##BC070222|RPS17|6218|ribosomal protein S17##BC022370|RPS17|6218|ribosomal protein S17##NM_001021|RPS17|6218|ribosomal protein S17##NM_001199057|RPS17L|100505503|ribosomal protein S17-like##BC062715|RPS17|6218|ribosomal protein S17	0.245435	0.0	
chr19	2698595	2698775	reg1004070.p1	4.263	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-222447	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-241725	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-241749	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	4010	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	4057	-	AK124445 TSC_hg19_v1_chr19_-_2717420	18664	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.969855	0.014521	denovo_WM_7:-91:0.638	denovo_WM_7:-96:0.289
chr6	355790	355895	reg1012015.p1	4.263	+	AF424702 AK310653 TSC_hg19_v1_chr6_+_292526 AK296402 AF165519 DQ893393 DQ896715 AB528664 CU692732	-63345	+	TSC_hg19_v1_chr6_+_292080 AY249859 BC022847 NM_020185	-63757	+	None	None	None	NM_001195286 NM_002460 U52682 TSC_hg19_v1_chr6_+_391751 AK310149 U63738 D78261 BC015752	35922	+	AF508547 BC101697 BC101699 NM_148959	301111	-	TSC_hg19_v1_chr6_-_693110 AJ414403 AL833213 AK056564 NM_018303 BC080542 AK302941 AK314628	337248	-	AF424702|DUSP22|56940|dual specificity phosphatase 22##AK310653|DUSP22|56940|dual specificity phosphatase 22##AK296402|DUSP22|56940|dual specificity phosphatase 22##AF165519|DUSP22|56940|dual specificity phosphatase 22##DQ893393|DUSP22|56940|dual specificity phosphatase 22##DQ896715|DUSP22|56940|dual specificity phosphatase 22##AY249859|DUSP22|56940|dual specificity phosphatase 22##BC022847|DUSP22|56940|dual specificity phosphatase 22##NM_020185|DUSP22|56940|dual specificity phosphatase 22##NM_001195286|IRF4|3662|interferon regulatory factor 4##NM_002460|IRF4|3662|interferon regulatory factor 4##U52682|IRF4|3662|interferon regulatory factor 4##AK310149|IRF4|3662|interferon regulatory factor 4##U63738|IRF4|3662|interferon regulatory factor 4##D78261|IRF4|3662|interferon regulatory factor 4##BC015752|IRF4|3662|interferon regulatory factor 4##AF508547|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101697|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##BC101699|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##NM_148959|HUS1B|135458|HUS1 checkpoint homolog b (S. pombe)##AJ414403|EXOC2|55770|exocyst complex component 2##AL833213|EXOC2|55770|exocyst complex component 2##AK056564|EXOC2|55770|exocyst complex component 2##NM_018303|EXOC2|55770|exocyst complex component 2##BC080542|EXOC2|55770|exocyst complex component 2##AK302941|EXOC2|55770|exocyst complex component 2##AK314628|EXOC2|55770|exocyst complex component 2	0.890461	0.0	denovo_WM_7:0:0.845
chr8	77434705	77434805	reg1013982.p1	4.263	+	BX571750 NM_004133 EU832451 HQ692842	-982541	+	TSC_hg19_v1_chr8_+_76320132 BC054009 Z49826	-1114567	+	NM_031461 TSC_hg19_v1_chr8_+_75896739 AY358564 BC020514 AK314048 AL834301 AF142573	-1537846	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	158755	+	AB083343 TSC_hg19_v1_chr8_+_77593533	158773	+	AK131399 TSC_hg19_v1_chr8_+_77765961	331134	+	BX571750|HNF4G|3174|hepatocyte nuclear factor 4, gamma##NM_004133|HNF4G|3174|hepatocyte nuclear factor 4, gamma##EU832451|HNF4G|3174|hepatocyte nuclear factor 4, gamma##HQ692842|HNF4G|3174|hepatocyte nuclear factor 4, gamma##BC054009|HNF4G|3174|hepatocyte nuclear factor 4, gamma##Z49826|HNF4G|3174|hepatocyte nuclear factor 4, gamma##NM_031461|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AY358564|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##BC020514|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AK314048|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AL834301|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AF142573|CRISPLD1|83690|cysteine-rich secretory protein LCCL domain containing 1##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4##AB083343|ZFHX4|79776|zinc finger homeobox 4##AK131399|ZFHX4|79776|zinc finger homeobox 4	0.0	0.0	
chr10	5915781	5915896	reg1006163.p2	4.262	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-60403	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-60572	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-143166	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	16018	-	TSC_hg19_v1_chr10_+_5932205 AK095343	16361	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	16373	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.460011	0.0	denovo_WM_7:28:0.316
chr11	64811089	64811234	reg1011695.p2	4.262	+	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	-2743	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	-2780	+	NM_013306 NM_147777 TSC_hg19_v1_chr11_+_64794948 BC012767 BC014520 AK315642 AK315034 AF001435 BC009897 AF175267 AB527759 CU679523 AF175268 BT006631 AB209439	-16216	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	14841	-	DQ893251 DQ896580 TSC_hg19_v1_chr11_-_64851515 BC011000 AK291490	40339	-	TSC_hg19_v1_chr11_-_64851564 NM_080668	40424	-	BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##NM_013299|SAC3D1|29901|SAC3 domain containing 1##NM_013306|SNX15|29907|sorting nexin 15##NM_147777|SNX15|29907|sorting nexin 15##BC012767|SNX15|29907|sorting nexin 15##BC014520|SNX15|29907|sorting nexin 15##AK315642|SNX15|29907|sorting nexin 15##AK315034|SNX15|29907|sorting nexin 15##AF001435|SNX15|29907|sorting nexin 15##BC009897|SNX15|29907|sorting nexin 15##AF175267|SNX15|29907|sorting nexin 15##AF175268|SNX15|29907|sorting nexin 15##BT006631|SNX15|29907|sorting nexin 15##AB209439|SNX15|29907|sorting nexin 15##AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##DQ893251|CDCA5|113130|cell division cycle associated 5##DQ896580|CDCA5|113130|cell division cycle associated 5##BC011000|CDCA5|113130|cell division cycle associated 5##AK291490|CDCA5|113130|cell division cycle associated 5##NM_080668|CDCA5|113130|cell division cycle associated 5	1.949734	0.0	denovo_WM_7:-50:0.861	denovo_WM_7:-65:0.860
chr22	50415426	50415575	reg1014360.p2	4.262	+	TSC_hg19_v1_chr22_+_50354433 AK292005 BC141855 BC052239 AB528933 BC140030	-60989	+	TSC_hg19_v1_chr22_+_50354140 NM_001001852 AB114795	-61351	+	TSC_hg19_v1_chr22_+_50312337 BC050675 DQ470678 AK225930 AY358355 BC002894 DQ470676 DQ470677 DQ470680 AJ968414	-103125	+	NM_001001694 AK123987	35570	-	TSC_hg19_v1_chr22_-_50523682 AK294048	108192	-	BC028425 BC070042 TSC_hg19_v1_chr22_-_50523742	108239	-	AK292005|PIM3|415116|pim-3 oncogene##BC141855|PIM3|415116|pim-3 oncogene##BC052239|PIM3|415116|pim-3 oncogene##BC140030|PIM3|415116|pim-3 oncogene##NM_001001852|PIM3|415116|pim-3 oncogene##AB114795|PIM3|415116|pim-3 oncogene##BC050675|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470678|CRELD2|79174|cysteine-rich with EGF-like domains 2##AK225930|CRELD2|79174|cysteine-rich with EGF-like domains 2##AY358355|CRELD2|79174|cysteine-rich with EGF-like domains 2##BC002894|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470676|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470677|CRELD2|79174|cysteine-rich with EGF-like domains 2##DQ470680|CRELD2|79174|cysteine-rich with EGF-like domains 2##AJ968414|CRELD2|79174|cysteine-rich with EGF-like domains 2##NM_001001694|IL17REL|400935|interleukin 17 receptor E-like##AK123987|IL17REL|400935|interleukin 17 receptor E-like##AK294048|MLC1|23209|megalencephalic leukoencephalopathy with subcortical cysts 1##BC028425|MLC1|23209|megalencephalic leukoencephalopathy with subcortical cysts 1##BC070042|MLC1|23209|megalencephalic leukoencephalopathy with subcortical cysts 1	0.999932	0.0	denovo_WM_7:-7:0.842
chr4	38308060	38308180	reg1009302.p1	4.262	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-329103	+	AF095288 BC069114 BC069400 NM_006607	-346065	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-415331	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	357706	+	AF289565 TSC_hg19_v1_chr4_-_38666549	358369	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	476479	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.912336	0.0	denovo_WM_7:-96:0.258	denovo_WM_7:-97:0.602
chr7	101513343	101513511	reg1010720.p1	4.262	+	M74099 NM_181552	-52546	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-54218	+	BC002778 NM_138403	-240852	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	414970	+	TSC_hg19_v1_chr7_+_101928431 AB000520	415016	+	NM_001146210	483461	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	0.976742	0.0	denovo_WM_7:14:0.307	denovo_WM_7:15:0.307	denovo_WM_7:16:0.307
chr7	20056911	20057057	reg1016456.p1	4.262	+	BX648384 NM_152774	-244581	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-308338	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-871971	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	199996	-	AK295044 TSC_hg19_v1_chr7_+_20370337	313353	+	BC002630 NM_002214 M73780	313750	+	BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8	2.865592	0.0	denovo_WM_7:13:0.230	denovo_WM_7:14:0.624	denovo_WM_7:29:0.754	denovo_WM_7:-64:0.477
chr7	39709392	39709494	reg1012557.p1	4.262	+	TSC_hg19_v1_chr7_+_39663298 AK308109	-46135	+	TSC_hg19_v1_chr7_+_39663204 BC039858	-46232	+	TSC_hg19_v1_chr7_+_39663159 NM_005402	-46277	+	TSC_hg19_v1_chr7_+_39773192 BC038571	63789	+	TSC_hg19_v1_chr7_+_39989642 BC080601	280183	+	BC064414 TSC_hg19_v1_chr7_+_39989879	280441	+	AK308109|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC039858|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##NM_005402|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC038571|LINC00265|349114|long intergenic non-protein coding RNA 265##BC080601|CDK13|8621|cyclin-dependent kinase 13	0.999816	0.0	denovo_WM_7:-24:0.230	denovo_WM_7:-25:0.230	denovo_WM_7:-26:0.230	denovo_WM_7:-27:0.230
chr15	90686473	90686600	reg1010600.p2	4.261	+	TSC_hg19_v1_chr15_-_90645713 AK312627	-40809	-	TSC_hg19_v1_chr15_-_90645704 NM_002168 X69433	-40831	-	DQ892817 DQ896063 CU679271 TSC_hg19_v1_chr15_-_90645701 BC071828 BC009244 AK222916 AK299987	-40874	-	TSC_hg19_v1_chr15_+_90728151 NM_020210 AK289991 AY358392	41660	+	TSC_hg19_v1_chr15_+_90744561 AY445887 NM_198925 AB051532 BC126438 BC144141 BC110853 AB385501 HQ258520 AK026108	58154	+	TSC_hg19_v1_chr15_-_90777138 AB451276 AB451406 AB463454 CR456955 DQ891196 DQ894379	90592	-	AK312627|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_002168|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##X69433|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ892817|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##DQ896063|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC071828|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##BC009244|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK222916|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##AK299987|IDH2|3418|isocitrate dehydrogenase 2 (NADP+), mitochondrial##NM_020210|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AK289991|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AY358392|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AY445887|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##NM_198925|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AB051532|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC126438|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC144141|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##BC110853|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##HQ258520|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AK026108|SEMA4B|10509|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B##AB451276|CIB1|10519|calcium and integrin binding 1 (calmyrin)##AB451406|CIB1|10519|calcium and integrin binding 1 (calmyrin)##CR456955|CIB1|10519|calcium and integrin binding 1 (calmyrin)##DQ891196|CIB1|10519|calcium and integrin binding 1 (calmyrin)##DQ894379|CIB1|10519|calcium and integrin binding 1 (calmyrin)	0.0	0.988371	CTCF.p2:20:0.988
chr17	63014269	63014372	reg1007729.p2	4.261	+	TSC_hg19_v1_chr17_-_63009302 AK026902	-5014	-	TSC_hg19_v1_chr17_-_62971685 BX537538 AK056627 BC063466 AK311317	-42700	-	TSC_hg19_v1_chr17_-_62915587 AK294371	-98724	-	TSC_hg19_v1_chr17_-_63052724 AB528470 AF493902 CU691408 DQ893572 DQ894448 AK313672	38398	-	TSC_hg19_v1_chr17_-_63052756 L22075 BC036756	38440	-	BC011925 TSC_hg19_v1_chr17_-_63052851	38513	-	AK026902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BX537538|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK056627|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##BC063466|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK311317|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AF493902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ893572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ894448|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AK313672|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##L22075|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC036756|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13	2.995872	0.0	denovo_WM_7:-70:0.467
chr20	46040920	46041077	reg1011472.p1	4.261	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-55510	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-64351	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-113429	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	89624	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	89686	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	373754	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.993277	0.0	denovo_WM_7:-10:0.823
chr22	47040809	47040921	reg1018010.p1	4.261	+	CR456470 NM_015124 BC129837 AB463563 CU013020 CU013308	-18189	+	AF231024 NM_014246 TSC_hg19_v1_chr22_-_46933142	-107751	-	TSC_hg19_v1_chr22_+_46731810 AK303020	-309055	+	AB462977 CU012949 CU013237 CR456404 BC126940 BC067255 TSC_hg19_v1_chr22_-_47134112 AK291476 AJ457828	93214	-	TSC_hg19_v1_chr22_-_47134170 NM_022766 AB079066	93290	-	NM_014346 TSC_hg19_v1_chr22_+_47158546 AK055591 AK301445 BC029897 AK315779 BC002743 BC020976 BC001292 AK308039 CR456412 CU012972 CU013260 AB587482 CU678158 AB449908	117735	+	CR456470|GRAMD4|23151|GRAM domain containing 4##NM_015124|GRAMD4|23151|GRAM domain containing 4##BC129837|GRAMD4|23151|GRAM domain containing 4##AF231024|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##NM_014246|CELSR1|9620|cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)##AK303020|TRMU|55687|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase##CU012949|CERK|64781|ceramide kinase##CU013237|CERK|64781|ceramide kinase##CR456404|CERK|64781|ceramide kinase##BC126940|CERK|64781|ceramide kinase##BC067255|CERK|64781|ceramide kinase##AK291476|CERK|64781|ceramide kinase##AJ457828|CERK|64781|ceramide kinase##NM_022766|CERK|64781|ceramide kinase##AB079066|CERK|64781|ceramide kinase##NM_014346|TBC1D22A|25771|TBC1 domain family, member 22A##AK055591|TBC1D22A|25771|TBC1 domain family, member 22A##AK301445|TBC1D22A|25771|TBC1 domain family, member 22A##BC029897|TBC1D22A|25771|TBC1 domain family, member 22A##AK315779|TBC1D22A|25771|TBC1 domain family, member 22A##BC002743|TBC1D22A|25771|TBC1 domain family, member 22A##BC020976|TBC1D22A|25771|TBC1 domain family, member 22A##BC001292|TBC1D22A|25771|TBC1 domain family, member 22A##AK308039|TBC1D22A|25771|TBC1 domain family, member 22A##CR456412|TBC1D22A|25771|TBC1 domain family, member 22A##CU012972|TBC1D22A|25771|TBC1 domain family, member 22A##CU013260|TBC1D22A|25771|TBC1 domain family, member 22A##AB449908|TBC1D22A|25771|TBC1 domain family, member 22A	1.992756	0.0	denovo_WM_7:-44:0.381	denovo_WM_7:-45:0.290	denovo_WM_7:-61:0.273	denovo_WM_7:-62:0.364
chr9	70649680	70649796	reg1003915.p2	4.261	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-159562	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-159588	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-159598	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	207154	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	268086	+	BC033073 NM_021965	322076	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.994118	0.0	
chr11	45425044	45425144	reg1016264.p1	4.260	+	AK308841 AB384203 AM393283 BC093830 AK291009 BC093832 AL512743 AB037848 NM_001247987 NM_020826	-117344	-	AF275818 NM_020229	-309531	+	TSC_hg19_v1_chr11_-_44972435 AK292837 AK096176 AK056379 AK026607 AK054815 NM_001076787 NM_006034	-452677	-	TSC_hg19_v1_chr11_-_45687157 AK311168 BC022567 NM_003654	262090	-	NM_001145265 NM_001145266	400528	+	TSC_hg19_v1_chr11_+_45825944 AK225428 AK002182 AK091245	400820	+	AK308841|SYT13|57586|synaptotagmin XIII##AM393283|SYT13|57586|synaptotagmin XIII##BC093830|SYT13|57586|synaptotagmin XIII##AK291009|SYT13|57586|synaptotagmin XIII##BC093832|SYT13|57586|synaptotagmin XIII##AL512743|SYT13|57586|synaptotagmin XIII##AB037848|SYT13|57586|synaptotagmin XIII##NM_001247987|SYT13|57586|synaptotagmin XIII##NM_020826|SYT13|57586|synaptotagmin XIII##AF275818|PRDM11|56981|PR domain containing 11##NM_020229|PRDM11|56981|PR domain containing 11##AK292837|TP53I11|9537|tumor protein p53 inducible protein 11##AK096176|TP53I11|9537|tumor protein p53 inducible protein 11##AK056379|TP53I11|9537|tumor protein p53 inducible protein 11##AK026607|TP53I11|9537|tumor protein p53 inducible protein 11##AK054815|TP53I11|9537|tumor protein p53 inducible protein 11##NM_001076787|TP53I11|9537|tumor protein p53 inducible protein 11##NM_006034|TP53I11|9537|tumor protein p53 inducible protein 11##AK311168|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##BC022567|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_003654|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_001145265|SLC35C1|55343|solute carrier family 35, member C1##NM_001145266|SLC35C1|55343|solute carrier family 35, member C1##AK225428|SLC35C1|55343|solute carrier family 35, member C1##AK002182|SLC35C1|55343|solute carrier family 35, member C1##AK091245|SLC35C1|55343|solute carrier family 35, member C1	2.728795	0.0	denovo_WM_7:40:0.734	denovo_WM_7:-53:0.924	denovo_WM_7:-68:0.874
chr15	65222446	65222626	reg1008809.p1	4.260	+	TSC_hg19_v1_chr15_+_65204100 AK098736 NM_182703 AK075298 BC110610 AK307698	-18447	+	AK311036 NM_001195059 NM_025201 TSC_hg19_v1_chr15_+_65134113 AK096203 BC008744 AF494534	-88429	+	BC137503 BC137504 TSC_hg19_v1_chr15_-_65117814 BC018978 AK026345 EU084033 NM_025049 AB185926 AB185927	-104701	-	TSC_hg19_v1_chr15_-_65281780 AF212231 NM_001127889	59273	-	TSC_hg19_v1_chr15_-_65282170 AK172849 AK225527 AK312943 BC000244	59598	-	TSC_hg19_v1_chr15_-_65282253 AK301362 NM_001127890 NM_016630	59710	-	AK098736|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_182703|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK075298|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##BC110610|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##AK307698|ANKDD1A|348094|ankyrin repeat and death domain containing 1A##NM_001195059|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##NM_025201|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AK096203|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC008744|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##AF494534|PLEKHO2|80301|pleckstrin homology domain containing, family O member 2##BC137503|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC137504|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##BC018978|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AK026345|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##EU084033|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##NM_025049|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185926|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AB185927|PIF1|80119|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)##AF212231|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127889|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK172849|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK225527|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK312943|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##BC000244|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##AK301362|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_001127890|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)##NM_016630|SPG21|51324|spastic paraplegia 21 (autosomal recessive, Mast syndrome)	0.996673	0.0	denovo_WM_7:-69:0.527	denovo_WM_7:-70:0.470
chr5	107428814	107428936	reg1002084.p1	4.260	+	AK308672 NM_001962 U26403	-422285	-	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4530394	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4834418	+	TSC_hg19_v1_chr5_-_107717106 AK126722	288255	-	BC063316 NM_001163315	288923	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	635105	-	AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AB593118|HP07349|100652853|uncharacterized protein HP07349	0.0	0.0	
chr6	11224800	11224906	reg1013010.p2	4.260	+	AK123938 BC068585 NM_207582	-112841	-	BC032356 NM_001135575 TSC_hg19_v1_chr6_+_11094342	-130550	+	TSC_hg19_v1_chr6_+_11094066 AK058186	-130796	+	U64317 BC020686 TSC_hg19_v1_chr6_-_11232894 BC050740 BC040207	8038	-	L43821 TSC_hg19_v1_chr6_-_11232900	8047	-	TSC_hg19_v1_chr6_-_11232902 NM_006403 NM_182966	8057	-	AK123938|ERVFRD-1|405754|endogenous retrovirus group FRD, member 1##BC068585|ERVFRD-1|405754|endogenous retrovirus group FRD, member 1##NM_207582|ERVFRD-1|405754|endogenous retrovirus group FRD, member 1##BC032356|C6orf228|221710|chromosome 6 open reading frame 228##NM_001135575|C6orf228|221710|chromosome 6 open reading frame 228##AK058186|C6orf228|221710|chromosome 6 open reading frame 228##U64317|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC020686|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC050740|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##BC040207|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##L43821|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_006403|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_182966|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9	0.990308	0.0	denovo_WM_7:8:0.990
chr6	33361177	33361262	reg1013770.p1	4.260	+	TSC_hg19_v1_chr6_+_33359632 AK297378 AK303239 BC063567 BC121041 BC121042	-1567	+	TSC_hg19_v1_chr6_+_33359621 BC098438	-1598	+	BC000712 TSC_hg19_v1_chr6_+_33359612 BC073878	-1608	+	NM_002636 NM_024165 TSC_hg19_v1_chr6_+_33378818 AK225913 BC008834 AK316499 AK295412 AF029678 AF052205	17649	+	TSC_hg19_v1_chr6_-_33385666 BC005890 AF106943 BC107751	24466	-	TSC_hg19_v1_chr6_-_33385881 AK311556	24644	-	AK297378|KIFC1|3833|kinesin family member C1##AK303239|KIFC1|3833|kinesin family member C1##BC063567|KIFC1|3833|kinesin family member C1##BC121041|KIFC1|3833|kinesin family member C1##BC121042|KIFC1|3833|kinesin family member C1##BC098438|KIFC1|3833|kinesin family member C1##BC000712|KIFC1|3833|kinesin family member C1##BC073878|KIFC1|3833|kinesin family member C1##NM_002636|PHF1|5252|PHD finger protein 1##NM_024165|PHF1|5252|PHD finger protein 1##AK225913|PHF1|5252|PHD finger protein 1##BC008834|PHF1|5252|PHD finger protein 1##AK316499|PHF1|5252|PHD finger protein 1##AK295412|PHF1|5252|PHD finger protein 1##AF029678|PHF1|5252|PHD finger protein 1##AF052205|PHF1|5252|PHD finger protein 1##BC005890|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##AF106943|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##BC107751|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)	0.998955	0.0	
chr9	136833077	136833160	reg1018271.p1	4.260	+	BC136363 BC136364 BC144035 AK223402 TSC_hg19_v1_chr9_-_136605067 AF095735 AF095737 AK298348 AK316494 NM_007101	-228132	-	TSC_hg19_v1_chr9_-_136603475 AK291211 AF047004 AF047190 AJ223317 NM_001134707	-229640	-	NM_000787 Y00096 BC017174 X13255 X13256 DQ893630 EU176683 CU677847	-331610	+	BX640754 TSC_hg19_v1_chr9_-_136857447 AB587478 S76992 BC132965 BC132967 NM_001134398 NM_003371	24328	-	D26362 TSC_hg19_v1_chr9_-_136933121 BC010699 NM_007371	100075	-	TSC_hg19_v1_chr9_-_136933665 BC032124 AK299519	100508	-	BC136363|SARDH|1757|sarcosine dehydrogenase##BC136364|SARDH|1757|sarcosine dehydrogenase##BC144035|SARDH|1757|sarcosine dehydrogenase##AK223402|SARDH|1757|sarcosine dehydrogenase##AF095735|SARDH|1757|sarcosine dehydrogenase##AF095737|SARDH|1757|sarcosine dehydrogenase##AK298348|SARDH|1757|sarcosine dehydrogenase##AK316494|SARDH|1757|sarcosine dehydrogenase##NM_007101|SARDH|1757|sarcosine dehydrogenase##AK291211|SARDH|1757|sarcosine dehydrogenase##AF047004|SARDH|1757|sarcosine dehydrogenase##AF047190|SARDH|1757|sarcosine dehydrogenase##AJ223317|SARDH|1757|sarcosine dehydrogenase##NM_001134707|SARDH|1757|sarcosine dehydrogenase##NM_000787|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##Y00096|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BC017174|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13255|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13256|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##DQ893630|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##EU176683|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BX640754|VAV2|7410|vav 2 guanine nucleotide exchange factor##S76992|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132965|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132967|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_001134398|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_003371|VAV2|7410|vav 2 guanine nucleotide exchange factor##D26362|BRD3|8019|bromodomain containing 3##BC010699|BRD3|8019|bromodomain containing 3##NM_007371|BRD3|8019|bromodomain containing 3##BC032124|BRD3|8019|bromodomain containing 3##AK299519|BRD3|8019|bromodomain containing 3	0.99831	0.0	
chr14	71822840	71822980	reg1012188.p1	4.259	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-448459	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-448777	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-547101	-	AF090989 AF090990 NM_015556	173131	+	AK294895 NM_001204423	575906	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	576243	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.033789	0.0	
chr2	239055596	239055698	reg1009462.p1	4.259	+	NM_198582	-8285	+	NM_194312 AK124559	-46660	+	TSC_hg19_v1_chr2_+_238969747 BC000586 AK293283	-85880	+	CR533533 FJ491380 FJ491381 CU675457 AB590373 DQ892800 DQ896047 EU832279 EU832364 TSC_hg19_v1_chr2_-_239112267 AL136850 BC035746 AY024365	56592	-	TSC_hg19_v1_chr2_-_239112326 BC006576 HQ658059 HQ658060 NM_030768	56675	-	TSC_hg19_v1_chr2_-_239112354 AK001043	56697	-	NM_198582|KLHL30|377007|kelch-like 30 (Drosophila)##NM_194312|ESPNL|339768|espin-like##AK124559|ESPNL|339768|espin-like##BC000586|SCLY|51540|selenocysteine lyase##AK293283|SCLY|51540|selenocysteine lyase##CR533533|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##FJ491380|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##FJ491381|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##DQ892800|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##DQ896047|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##EU832279|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##EU832364|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AL136850|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##BC035746|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AY024365|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##BC006576|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##HQ658059|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##HQ658060|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##NM_030768|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase##AK001043|ILKAP|80895|integrin-linked kinase-associated serine/threonine phosphatase	0.997023	0.0	denovo_WM_7:7:0.313	denovo_WM_7:8:0.313	denovo_WM_7:9:0.313
chr7	140176898	140177078	reg1008660.p1	4.259	+	NM_001008749	-73146	+	AL136583 AL136583 TSC_hg19_v1_chr7_-_140098295 AK299276 BC028380 BC028380 BC046567 BC046567 AK296543 AK300265 AK074823 AK074823 NM_032295 NM_207113	-78689	-	TSC_hg19_v1_chr7_+_139877154 AK026372	-299832	+	TSC_hg19_v1_chr7_-_140179165 AB209298 AB527778 DQ892404 EU176516 BC064838 AM236048 BC037400 BC051821 BC012398 AK297361 AK315552	2174	-	TSC_hg19_v1_chr7_-_140179306 AF192784 AL136812 AF117233 BC025955	2282	-	TSC_hg19_v1_chr7_-_140179348 NM_001145125 NM_013446	2362	-	NM_001008749|RAB19|401409|RAB19, member RAS oncogene family##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK299276|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK296543|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK300265|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_032295|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_207113|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK026372|LOC100134229|100134229|uncharacterized LOC100134229##AB209298|MKRN1|23608|makorin ring finger protein 1##DQ892404|MKRN1|23608|makorin ring finger protein 1##EU176516|MKRN1|23608|makorin ring finger protein 1##BC064838|MKRN1|23608|makorin ring finger protein 1##AM236048|MKRN1|23608|makorin ring finger protein 1##BC037400|MKRN1|23608|makorin ring finger protein 1##BC051821|MKRN1|23608|makorin ring finger protein 1##BC012398|MKRN1|23608|makorin ring finger protein 1##AK297361|MKRN1|23608|makorin ring finger protein 1##AK315552|MKRN1|23608|makorin ring finger protein 1##AF192784|MKRN1|23608|makorin ring finger protein 1##AL136812|MKRN1|23608|makorin ring finger protein 1##AF117233|MKRN1|23608|makorin ring finger protein 1##BC025955|MKRN1|23608|makorin ring finger protein 1##NM_001145125|MKRN1|23608|makorin ring finger protein 1##NM_013446|MKRN1|23608|makorin ring finger protein 1	0.994945	0.0	
chr17	41135298	41135477	reg1011222.p2	4.258	+	BC014873 TSC_hg19_v1_chr17_+_41132589 AK303115 AL831813 AY189284	-2793	+	AK310125 BC039247 NM_173079 TSC_hg19_v1_chr17_+_41132581	-2806	+	AK295447 NM_001136042 NM_001142653 NM_001142654	-2843	-	TSC_hg19_v1_chr17_+_41150435 AK124148 NM_000988 BC098560 AK311792	15044	+	BC002588 TSC_hg19_v1_chr17_+_41150484	15093	+	NM_005533 TSC_hg19_v1_chr17_+_41158831 BC001356 AB463796 DQ892598 DQ895826 U72882	23465	+	BC014873|RUNDC1|146923|RUN domain containing 1##AL831813|RUNDC1|146923|RUN domain containing 1##AY189284|RUNDC1|146923|RUN domain containing 1##BC039247|RUNDC1|146923|RUN domain containing 1##NM_173079|RUNDC1|146923|RUN domain containing 1##AK295447|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001136042|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001142653|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##NM_001142654|AARSD1|80755|alanyl-tRNA synthetase domain containing 1##AK124148|RPL27|6155|ribosomal protein L27##NM_000988|RPL27|6155|ribosomal protein L27##BC098560|RPL27|6155|ribosomal protein L27##AK311792|RPL27|6155|ribosomal protein L27##BC002588|RPL27|6155|ribosomal protein L27##NM_005533|IFI35|3430|interferon-induced protein 35##BC001356|IFI35|3430|interferon-induced protein 35##DQ892598|IFI35|3430|interferon-induced protein 35##DQ895826|IFI35|3430|interferon-induced protein 35##U72882|IFI35|3430|interferon-induced protein 35	1.992233	0.0	denovo_WM_7:-3:0.316	denovo_WM_7:-4:0.655
chr20	53250566	53250721	reg1010781.p1	4.258	+	TSC_hg19_v1_chr20_+_53092131 BC008992 NM_018431 AF132732 AK313222	-158429	+	TSC_hg19_v1_chr20_+_52824630 AK312059 BC010953 U41816	-426006	+	TSC_hg19_v1_chr20_+_52824396 NM_002623	-426196	+	NM_080617	1329368	-	BC069105 NM_019888 AB529241 AY227893 BC069591 BC069599 BC096702 BC096737 BC098169 BC098351 CU686926	1573144	+	NM_080821 TSC_hg19_v1_chr20_+_54934029 AK314768 AJ311123 BC017725 AK075565	1683381	+	BC008992|DOK5|55816|docking protein 5##NM_018431|DOK5|55816|docking protein 5##AF132732|DOK5|55816|docking protein 5##AK313222|DOK5|55816|docking protein 5##AK312059|PFDN4|5203|prefoldin subunit 4##BC010953|PFDN4|5203|prefoldin subunit 4##U41816|PFDN4|5203|prefoldin subunit 4##NM_002623|PFDN4|5203|prefoldin subunit 4##NM_080617|CBLN4|140689|cerebellin 4 precursor##BC069105|MC3R|4159|melanocortin 3 receptor##NM_019888|MC3R|4159|melanocortin 3 receptor##AY227893|MC3R|4159|melanocortin 3 receptor##BC069591|MC3R|4159|melanocortin 3 receptor##BC069599|MC3R|4159|melanocortin 3 receptor##BC096702|MC3R|4159|melanocortin 3 receptor##BC096737|MC3R|4159|melanocortin 3 receptor##BC098169|MC3R|4159|melanocortin 3 receptor##BC098351|MC3R|4159|melanocortin 3 receptor##NM_080821|FAM210B|116151|family with sequence similarity 210, member B##AK314768|FAM210B|116151|family with sequence similarity 210, member B##AJ311123|FAM210B|116151|family with sequence similarity 210, member B##BC017725|FAM210B|116151|family with sequence similarity 210, member B##AK075565|FAM210B|116151|family with sequence similarity 210, member B	0.083359	0.0	
chr21	35318284	35318367	reg1010490.p2	4.258	+	DQ656021 DQ656022 BT019836 CR456822 BC021233 AK124187 TSC_hg19_v1_chr21_-_35288097 AK222962 AK311796 BC022865 X83218 AK222608 NM_001697	-30233	-	TSC_hg19_v1_chr21_+_35190587 AY340592 AY340593 AF180522 AY138139	-127655	+	TSC_hg19_v1_chr21_+_35014896 AK027846 BC058925 AF114487 AF114488 NM_001001132 NM_003024 AK075290 BC046162 BC039036 BC117560 AK300274 BC073744 AK074554 BC020269 BC013578 AF064243 AF064244 DQ679754 DQ679755 DQ679756 DQ679757 EU107386 EU120735 EU120736 EU140799 EU191901 BC116185 BC116186	-303470	+	TSC_hg19_v1_chr21_+_35445875 AY061855 NM_032476 AX750578 NM_006933	127516	+	AB049942 AK312084 TSC_hg19_v1_chr21_+_35445877 BC004976 BC010076 BC000547 BC051302	127604	+	AF302095 DQ192290 NM_172201 BC112087 BC093892	418021	+	BT019836|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##CR456822|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC021233|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK124187|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222962|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK311796|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##BC022865|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##X83218|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AK222608|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##NM_001697|ATP5O|539|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit##AY340592|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY340593|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF180522|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY138139|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK027846|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC058925|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114487|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF114488|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_001001132|ITSN1|6453|intersectin 1 (SH3 domain protein)##NM_003024|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK075290|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC039036|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC117560|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK300274|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC073744|ITSN1|6453|intersectin 1 (SH3 domain protein)##AK074554|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC020269|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC013578|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064243|ITSN1|6453|intersectin 1 (SH3 domain protein)##AF064244|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679754|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679755|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679756|ITSN1|6453|intersectin 1 (SH3 domain protein)##DQ679757|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU107386|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120735|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU120736|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU140799|ITSN1|6453|intersectin 1 (SH3 domain protein)##EU191901|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116185|ITSN1|6453|intersectin 1 (SH3 domain protein)##BC116186|ITSN1|6453|intersectin 1 (SH3 domain protein)##AY061855|MRPS6|64968|mitochondrial ribosomal protein S6##NM_032476|MRPS6|64968|mitochondrial ribosomal protein S6##AX750578|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##NM_006933|SLC5A3|6526|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3##AB049942|MRPS6|64968|mitochondrial ribosomal protein S6##AK312084|MRPS6|64968|mitochondrial ribosomal protein S6##BC004976|MRPS6|64968|mitochondrial ribosomal protein S6##BC010076|MRPS6|64968|mitochondrial ribosomal protein S6##BC000547|MRPS6|64968|mitochondrial ribosomal protein S6##BC051302|MRPS6|64968|mitochondrial ribosomal protein S6##AF302095|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##DQ192290|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##NM_172201|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC112087|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2##BC093892|KCNE2|9992|potassium voltage-gated channel, Isk-related family, member 2	1.397059	0.0	denovo_WM_7:-88:0.397	denovo_WM_7:-103:0.404
chr3	29322792	29322972	reg1000715.p3	4.258	+	NM_001040432	-890896	+	TSC_hg19_v1_chr3_-_28390539 NM_001134432 NM_001134433 NM_022461	-932321	-	BX648471 TSC_hg19_v1_chr3_-_28390316 AK290637 BC001139 BC001853 AK025592	-932500	-	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	82	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	1325140	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	1325521	+	NM_001040432|ZCWPW2|152098|zinc finger, CW type with PWWP domain 2##NM_001134432|AZI2|64343|5-azacytidine induced 2##NM_001134433|AZI2|64343|5-azacytidine induced 2##NM_022461|AZI2|64343|5-azacytidine induced 2##BX648471|AZI2|64343|5-azacytidine induced 2##AK290637|AZI2|64343|5-azacytidine induced 2##BC001139|AZI2|64343|5-azacytidine induced 2##BC001853|AZI2|64343|5-azacytidine induced 2##AK025592|AZI2|64343|5-azacytidine induced 2##NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)	0.966151	0.0	denovo_WM_7:91:0.531	denovo_WM_7:92:0.315
chr7	117750540	117750717	reg1006713.p2	4.258	+	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	-237085	-	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	-237147	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	-630590	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	73543	+	NM_019644 AK302407	114106	+	AK307139 AB028967 NM_012281	2163076	+	BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2	1.90105	0.0	denovo_WM_7:-25:0.620	denovo_WM_7:-40:0.570	denovo_WM_7:-41:0.222
chr13	85960503	85960660	reg1014815.p1	4.257	+	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-1504081	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-1504156	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-5045517	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	412858	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	2364288	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	6090323	+	AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5	0.0	0.0	
chr14	22694395	22694520	reg1012137.p1	4.257	+	AB463964 NM_001001912 AY726598	-561135	+	NM_001005466 AB529274 BC137371 BC137382	-591411	-	AB528817 NM_001005465	-655583	-	X58763 TSC_hg19_v1_chr14_+_22989364	294892	+	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	363629	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	363677	-	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##NM_001005465|OR10G3|26533|olfactory receptor, family 10, subfamily G, member 3##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1	0.0	0.230371	CTCF.p2:-85:0.230
chr16	81035251	81035378	reg1014002.p1	4.257	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	-197267	-	AF125108 NM_130897 BC054892 BC035232	-460426	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1400699	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	4770	+	TSC_hg19_v1_chr16_+_81040132 BC007334	4829	+	TSC_hg19_v1_chr16_-_81040491 AF201935 BC032631 NM_020188	5156	-	AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N##AF201935|C16orf61|56942|chromosome 16 open reading frame 61##BC032631|C16orf61|56942|chromosome 16 open reading frame 61##NM_020188|C16orf61|56942|chromosome 16 open reading frame 61	0.0	0.0	
chr17	32709044	32709171	reg1013920.p2	4.257	+	AB528767 BC105073 BC105075 M57502 AK312183 NM_002981	-18892	-	NM_005408 U59808 AJ001634 BC008621 U46767 X98306 AB463483 CU679005 DQ891497 DQ894688 BT007385 CR450337 Z77650	-25576	+	Y16645 NM_005623	-63046	+	BC133004 BC136710 BC142651 AK126768 NM_207454	197245	-	NM_207313	198660	+	CU693272 AK301773 TSC_hg19_v1_chr17_-_33288425 AK225729 BC026125 AK225728 D78333	579328	-	BC105073|CCL1|6346|chemokine (C-C motif) ligand 1##BC105075|CCL1|6346|chemokine (C-C motif) ligand 1##M57502|CCL1|6346|chemokine (C-C motif) ligand 1##AK312183|CCL1|6346|chemokine (C-C motif) ligand 1##NM_002981|CCL1|6346|chemokine (C-C motif) ligand 1##NM_005408|CCL13|6357|chemokine (C-C motif) ligand 13##U59808|CCL13|6357|chemokine (C-C motif) ligand 13##AJ001634|CCL13|6357|chemokine (C-C motif) ligand 13##BC008621|CCL13|6357|chemokine (C-C motif) ligand 13##U46767|CCL13|6357|chemokine (C-C motif) ligand 13##X98306|CCL13|6357|chemokine (C-C motif) ligand 13##DQ891497|CCL13|6357|chemokine (C-C motif) ligand 13##DQ894688|CCL13|6357|chemokine (C-C motif) ligand 13##BT007385|CCL13|6357|chemokine (C-C motif) ligand 13##CR450337|CCL13|6357|chemokine (C-C motif) ligand 13##Z77650|CCL13|6357|chemokine (C-C motif) ligand 13##Y16645|CCL8|6355|chemokine (C-C motif) ligand 8##NM_005623|CCL8|6355|chemokine (C-C motif) ligand 8##BC133004|C17orf102|400591|chromosome 17 open reading frame 102##BC136710|C17orf102|400591|chromosome 17 open reading frame 102##BC142651|C17orf102|400591|chromosome 17 open reading frame 102##AK126768|C17orf102|400591|chromosome 17 open reading frame 102##NM_207454|C17orf102|400591|chromosome 17 open reading frame 102##NM_207313|TMEM132E|124842|transmembrane protein 132E##AK301773|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225729|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC026125|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225728|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##D78333|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)	1.186607	0.0	denovo_WM_7:-4:0.326	denovo_WM_7:39:0.544
chr4	109040054	109040234	reg1000524.p2	4.257	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-129071	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-129132	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-129208	+	AK303272 NM_001166119	47770	-	TSC_hg19_v1_chr4_+_109088684 BC020624	48540	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	49655	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	0.0	0.0	
chr6	56781836	56781995	reg1011460.p2	4.257	+	AK299898 TSC_hg19_v1_chr6_-_56716715	-65201	-	AK294830 TSC_hg19_v1_chr6_-_56716493	-65463	-	TSC_hg19_v1_chr6_-_56708446 U31850	-73443	-	TSC_hg19_v1_chr6_+_56819725 NM_152731	37824	+	BC036119 TSC_hg19_v1_chr6_+_56819931 AK054724	38091	+	TSC_hg19_v1_chr6_+_56911328 BC041125 NM_020931	129431	+	AK299898|DST|667|dystonin##AK294830|DST|667|dystonin##U31850|DST|667|dystonin##NM_152731|BEND6|221336|BEN domain containing 6##BC036119|BEND6|221336|BEN domain containing 6##AK054724|BEND6|221336|BEN domain containing 6##BC041125|KIAA1586|57691|KIAA1586##NM_020931|KIAA1586|57691|KIAA1586	0.909334	0.0	denovo_WM_7:-106:0.218	denovo_WM_7:-107:0.630
chr7	128665395	128665509	reg1008556.p1	4.257	+	EU258898 NM_001098627 DQ995494 AY504946 DQ277634	-84644	+	DQ995493 AY693669 BC004139 BC004201 DQ277633 NM_032643	-87194	+	AK293654 AY693665 AY693668 NM_001098629 NM_001098630 NM_001242452 DQ995492 U51127 AK297083 AY504947 AY693666 AY693667 EU258896	-87416	+	AJ133769 AF145029 TSC_hg19_v1_chr7_-_128694965 AK312580 BC068530	29443	-	TSC_hg19_v1_chr7_-_128695168 BC009923	29696	-	TSC_hg19_v1_chr7_-_128695181 AK225999 NM_001191028 NM_012470	29753	-	EU258898|IRF5|3663|interferon regulatory factor 5##NM_001098627|IRF5|3663|interferon regulatory factor 5##DQ995494|IRF5|3663|interferon regulatory factor 5##AY504946|IRF5|3663|interferon regulatory factor 5##DQ277634|IRF5|3663|interferon regulatory factor 5##AY693669|IRF5|3663|interferon regulatory factor 5##BC004139|IRF5|3663|interferon regulatory factor 5##BC004201|IRF5|3663|interferon regulatory factor 5##DQ277633|IRF5|3663|interferon regulatory factor 5##NM_032643|IRF5|3663|interferon regulatory factor 5##AK293654|IRF5|3663|interferon regulatory factor 5##AY693665|IRF5|3663|interferon regulatory factor 5##AY693668|IRF5|3663|interferon regulatory factor 5##NM_001098629|IRF5|3663|interferon regulatory factor 5##NM_001098630|IRF5|3663|interferon regulatory factor 5##NM_001242452|IRF5|3663|interferon regulatory factor 5##DQ995492|IRF5|3663|interferon regulatory factor 5##U51127|IRF5|3663|interferon regulatory factor 5##AK297083|IRF5|3663|interferon regulatory factor 5##AY504947|IRF5|3663|interferon regulatory factor 5##AY693666|IRF5|3663|interferon regulatory factor 5##AY693667|IRF5|3663|interferon regulatory factor 5##EU258896|IRF5|3663|interferon regulatory factor 5##AJ133769|TNPO3|23534|transportin 3##AF145029|TNPO3|23534|transportin 3##AK312580|TNPO3|23534|transportin 3##BC068530|TNPO3|23534|transportin 3##BC009923|TNPO3|23534|transportin 3##AK225999|TNPO3|23534|transportin 3##NM_001191028|TNPO3|23534|transportin 3##NM_012470|TNPO3|23534|transportin 3	2.982241	0.0	denovo_WM_7:-7:0.591	denovo_WM_7:-8:0.296	denovo_WM_7:-22:0.299	denovo_WM_7:-23:0.396	denovo_WM_7:-24:0.297	denovo_WM_7:-38:0.298	denovo_WM_7:-39:0.594
chr7	91627620	91627736	reg1010791.p1	4.257	+	TSC_hg19_v1_chr7_+_91570181 NM_005751 NM_147185 AJ131693 AF026245 BC015533 AB019691 AY803272 CU677341	-57397	+	TSC_hg19_v1_chr7_-_91509979 BC108648 AL832861 AK298469 AK313641 NM_006980 Y09615 AK222730 AK311568	-117663	-	TSC_hg19_v1_chr7_+_90893747 AB017363 NM_003505 AF072872 BC051271 AK314996	-733802	+	AB590319 CU689330 DQ891311 DQ894495 TSC_hg19_v1_chr7_-_91763765 D55653 BC018429	136044	-	TSC_hg19_v1_chr7_-_91763792 AK314205 BC032322 U23942	136123	-	TSC_hg19_v1_chr7_-_91763829 NM_000786	136169	-	NM_005751|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##NM_147185|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##AJ131693|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##AF026245|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##BC015533|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##AB019691|AKAP9|10142|A kinase (PRKA) anchor protein (yotiao) 9##BC108648|MTERF|7978|mitochondrial transcription termination factor##AL832861|MTERF|7978|mitochondrial transcription termination factor##AK298469|MTERF|7978|mitochondrial transcription termination factor##AK313641|MTERF|7978|mitochondrial transcription termination factor##NM_006980|MTERF|7978|mitochondrial transcription termination factor##Y09615|MTERF|7978|mitochondrial transcription termination factor##AK222730|MTERF|7978|mitochondrial transcription termination factor##AB017363|FZD1|8321|frizzled family receptor 1##NM_003505|FZD1|8321|frizzled family receptor 1##AF072872|FZD1|8321|frizzled family receptor 1##BC051271|FZD1|8321|frizzled family receptor 1##AK314996|FZD1|8321|frizzled family receptor 1##DQ891311|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##DQ894495|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##D55653|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##BC018429|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##AK314205|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##BC032322|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##U23942|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1##NM_000786|CYP51A1|1595|cytochrome P450, family 51, subfamily A, polypeptide 1	1.979926	0.0	denovo_WM_7:62:0.206	denovo_WM_7:84:0.208
chr16	71850957	71851100	reg1013781.p1	4.256	+	TSC_hg19_v1_chr16_-_71842963 BC036283 AK128078 NM_001030007 NM_001128 AK314484	-8050	-	TSC_hg19_v1_chr16_-_71842738 AK293233 AK225906 AK294546 AK299630	-8275	-	TSC_hg19_v1_chr16_-_71842690 AB015317 Y12226	-8394	-	TSC_hg19_v1_chr16_+_71879878 AB621810	28847	+	TSC_hg19_v1_chr16_+_71879908 NM_001137675	28893	+	AF070588 AK296603 NM_001201553 NM_017530	66399	-	BC036283|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK128078|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001030007|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001128|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK314484|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK293233|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK225906|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK294546|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK299630|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AB015317|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##Y12226|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001137675|ATXN1L|342371|ataxin 1-like##AF070588|ZNF821|55565|zinc finger protein 821##AK296603|ZNF821|55565|zinc finger protein 821##NM_001201553|ZNF821|55565|zinc finger protein 821##NM_017530|ZNF821|55565|zinc finger protein 821	0.520492	0.0	denovo_WM_7:87:0.250	denovo_WM_7:88:0.246
chr16	85593633	85593797	reg1012006.p2	4.256	+	BC093665 BC111944 AK126284 NM_198491	-447661	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-532345	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-548586	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	51306	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	53238	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	128827	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	1.661162	0.0	denovo_WM_7:8:0.577
chr1	9075825	9075972	reg1013585.p2	4.256	+	NM_001215 AK300652 BC034350 M57892 AB102863 AB103091	-69965	+	AK309177 NM_001428	-136748	-	TSC_hg19_v1_chr1_-_8938746 AK223192 BX537400 AK309291 AK315417	-137136	-	AB527336 AY571960 NM_207420	10505	-	TSC_hg19_v1_chr1_-_9117554 AF451839 AF479408	41680	-	TSC_hg19_v1_chr1_-_9129605 DQ892291 DQ895491 CU674838 AK300091	53701	-	NM_001215|CA6|765|carbonic anhydrase VI##AK300652|CA6|765|carbonic anhydrase VI##BC034350|CA6|765|carbonic anhydrase VI##M57892|CA6|765|carbonic anhydrase VI##AB102863|CA6|765|carbonic anhydrase VI##AB103091|CA6|765|carbonic anhydrase VI##AK309177|ENO1|2023|enolase 1, (alpha)##NM_001428|ENO1|2023|enolase 1, (alpha)##AK223192|ENO1|2023|enolase 1, (alpha)##BX537400|ENO1|2023|enolase 1, (alpha)##AK309291|ENO1|2023|enolase 1, (alpha)##AK315417|ENO1|2023|enolase 1, (alpha)##AY571960|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_207420|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##AF451839|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AF479408|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ892291|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ895491|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK300091|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5	1.700625	0.0	denovo_WM_7:58:0.811	denovo_WM_7:-104:0.237	denovo_WM_7:-105:0.237	denovo_WM_7:-106:0.237	denovo_WM_7:-107:0.237
chr2	120399260	120399408	reg1014535.p1	4.256	+	AK293665 NM_001029996 TSC_hg19_v1_chr2_+_120302024 BC036530 AK304416	-97292	+	TSC_hg19_v1_chr2_-_120282060 BC035757	-117271	-	TSC_hg19_v1_chr2_-_120282018 AK314638 NM_002980	-117315	-	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	37400	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	37447	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	118066	+	AK293665|PCDP1|200373|primary ciliary dyskinesia protein 1##NM_001029996|PCDP1|200373|primary ciliary dyskinesia protein 1##BC036530|PCDP1|200373|primary ciliary dyskinesia protein 1##AK304416|PCDP1|200373|primary ciliary dyskinesia protein 1##BC035757|SCTR|6344|secretin receptor##AK314638|SCTR|6344|secretin receptor##NM_002980|SCTR|6344|secretin receptor##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)	0.0	0.995888	CTCF.p2:-4:0.996
chr3	20122455	20122602	reg1014863.p1	4.256	+	BC070075 TSC_hg19_v1_chr3_+_20081907 BC060823 AB527402	-40618	+	NM_003884 U57317	-41005	+	BC105097 BC105099 BC021717 AK058178 NM_001252657	-68837	-	AB193056 AB193057 AB193058 AB193059 AB193060 AB193061 AB193062 AB193063 AB193064 AB193065 AB193066 TSC_hg19_v1_chr3_-_20227699 AB187577 AB187578 AB187579 AB187580 AB187581 AB187582 AB567656 AB567657 BC017867 BX648516 NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_138484 AK308095 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257	105146	-	AK026072 NM_024697	1670287	-	AK310298 TSC_hg19_v1_chr3_-_22414124	2291606	-	BC070075|KAT2B|8850|K(lysine) acetyltransferase 2B##BC060823|KAT2B|8850|K(lysine) acetyltransferase 2B##NM_003884|KAT2B|8850|K(lysine) acetyltransferase 2B##U57317|KAT2B|8850|K(lysine) acetyltransferase 2B##BC105097|PP2D1|151649|protein phosphatase 2C-like domain containing 1##BC105099|PP2D1|151649|protein phosphatase 2C-like domain containing 1##BC021717|PP2D1|151649|protein phosphatase 2C-like domain containing 1##AK058178|PP2D1|151649|protein phosphatase 2C-like domain containing 1##NM_001252657|PP2D1|151649|protein phosphatase 2C-like domain containing 1##AB193056|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193057|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193058|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193059|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193060|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193061|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193062|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193063|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193064|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193065|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193066|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187577|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187578|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187579|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187580|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187581|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187582|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567656|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567657|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC017867|SGOL1|151648|shugoshin-like 1 (S. pombe)##BX648516|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012409|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012410|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012411|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012412|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012413|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_138484|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK308095|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199251|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199252|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199253|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199254|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199255|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199256|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199257|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK026072|ZNF385D|79750|zinc finger protein 385D##NM_024697|ZNF385D|79750|zinc finger protein 385D##AK310298|ZNF385D|79750|zinc finger protein 385D	0.022686	0.0	
chr1	243876984	243877163	reg1017684.p1	4.255	+	TSC_hg19_v1_chr1_+_243419405 AK297105 AF250731	-457638	+	BC032454 TSC_hg19_v1_chr1_+_243419371 AK299249	-457702	+	TSC_hg19_v1_chr1_+_243419357 AK299212	-457718	+	AF135794 AB463341 AM392791 AM392849 AJ245709 AF124141 AK308052 BC020479 AF085234 AY005799 BC121154 NM_005465 NM_181690	129454	-	AL117525 NM_001206729	129812	-	TSC_hg19_v1_chr1_+_244214553 NM_205768	337483	+	AK297105|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF250731|SDCCAG8|10806|serologically defined colon cancer antigen 8##BC032454|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299249|SDCCAG8|10806|serologically defined colon cancer antigen 8##AK299212|SDCCAG8|10806|serologically defined colon cancer antigen 8##AF135794|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392791|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AM392849|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AJ245709|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF124141|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AK308052|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC020479|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AF085234|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AY005799|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##BC121154|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_005465|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_181690|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##AL117525|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_001206729|AKT3|10000|v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma)##NM_205768|ZNF238|10472|zinc finger protein 238	1.962107	0.0	denovo_WM_7:-3:0.328	denovo_WM_7:-4:0.403	denovo_WM_7:-5:0.221	denovo_WM_7:-18:0.320	denovo_WM_7:-20:0.384
chr15	82579104	82579208	reg1005470.p2	4.255	+	TSC_hg19_v1_chr15_+_82555158 AL833762 NM_001008226 BC144647 AK304339	-24003	+	TSC_hg19_v1_chr15_-_82555076 NM_001040610 NM_024580	-24067	-	BC014628 TSC_hg19_v1_chr15_-_82555043 AK300348 AK056656 BX538332	-24125	-	NM_001164465	62549	-	TSC_hg19_v1_chr15_+_82647308 BC066934	68175	+	NM_198181 CR936812	143060	+	AL833762|FAM154B|283726|family with sequence similarity 154, member B##NM_001008226|FAM154B|283726|family with sequence similarity 154, member B##AK304339|FAM154B|283726|family with sequence similarity 154, member B##NM_001040610|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##NM_024580|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##BC014628|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##AK300348|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##AK056656|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##BX538332|EFTUD1|79631|elongation factor Tu GTP binding domain containing 1##NM_001164465|GOLGA6L10|647042|golgin A6 family-like 10##BC066934|UBE2Q2P2|100134869|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2##NM_198181|GOLGA6L9|440295|golgin A6 family-like 9##CR936812|GOLGA6L9|440295|golgin A6 family-like 9	1.906073	0.0	denovo_WM_7:70:0.426	denovo_WM_7:88:0.674
chr16	11946428	11946555	reg1009637.p1	4.255	+	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	-1087	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	-55376	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	-55440	-	TSC_hg19_v1_chr16_-_12009569 AB590486	63112	-	BC009503 TSC_hg19_v1_chr16_-_12009763 AK095483	63257	-	TSC_hg19_v1_chr16_-_12009775 BC008391	63284	-	AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC009503|GSPT1|2935|G1 to S phase transition 1##AK095483|GSPT1|2935|G1 to S phase transition 1##BC008391|GSPT1|2935|G1 to S phase transition 1	0.044836	0.0	
chr17	18828658	18828775	reg1013783.p1	4.255	+	NM_001243940 AB007851 BC101670 BC101672 BC143475	-59895	+	TSC_hg19_v1_chr17_+_18761445 BC106050 AK304544	-67246	+	NM_001243941 NM_002767 TSC_hg19_v1_chr17_+_18761443 AK313087	-67304	+	AK057946 NM_001042450 NM_152351 AK298345 BC062617 BC034380	26788	+	TSC_hg19_v1_chr17_-_18908078 NM_001039999	79363	-	BT019981 CR541941 CR541966 AB528891 CU687638 BC035856 U52518 BC063035 NM_006613	121570	-	NM_001243940|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AB007851|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101670|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC101672|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC143475|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC106050|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK304544|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243941|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_002767|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK313087|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK057946|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001042450|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_152351|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##AK298345|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC062617|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##BC034380|SLC5A10|125206|solute carrier family 5 (sodium/glucose cotransporter), member 10##NM_001039999|FAM83G|644815|family with sequence similarity 83, member G##BT019981|GRAP|10750|GRB2-related adaptor protein##CR541941|GRAP|10750|GRB2-related adaptor protein##CR541966|GRAP|10750|GRB2-related adaptor protein##BC035856|GRAP|10750|GRB2-related adaptor protein##U52518|GRAP|10750|GRB2-related adaptor protein##BC063035|GRAP|10750|GRB2-related adaptor protein##NM_006613|GRAP|10750|GRB2-related adaptor protein	0.0576	0.0	
chr1	93440704	93440831	reg1008702.p1	4.255	+	TSC_hg19_v1_chr1_-_93427020 BC070342 NM_001006605 NM_001252269 NM_001252270 NM_001252273	-13729	-	TSC_hg19_v1_chr1_-_93399531 BX648424	-41175	-	NM_001252271	-98061	-	TSC_hg19_v1_chr1_+_93544836 NM_001164391 NM_001164392 NM_001164393 NM_007358 AK290318 AK302900 AJ010014 AK302776 AF086908 BC010013 BC001897	104066	+	AY359039 BC016556 AF151858 TSC_hg19_v1_chr1_-_93645971 AK293308 BC016365 AK312787 CR936808 AK125882	205220	-	BC070051 NM_001167830 NM_016040	205478	-	BC070342|FAM69A|388650|family with sequence similarity 69, member A##NM_001006605|FAM69A|388650|family with sequence similarity 69, member A##NM_001252269|FAM69A|388650|family with sequence similarity 69, member A##NM_001252270|FAM69A|388650|family with sequence similarity 69, member A##NM_001252273|FAM69A|388650|family with sequence similarity 69, member A##NM_001252271|FAM69A|388650|family with sequence similarity 69, member A##NM_001164391|MTF2|22823|metal response element binding transcription factor 2##NM_001164392|MTF2|22823|metal response element binding transcription factor 2##NM_001164393|MTF2|22823|metal response element binding transcription factor 2##NM_007358|MTF2|22823|metal response element binding transcription factor 2##AK290318|MTF2|22823|metal response element binding transcription factor 2##AK302900|MTF2|22823|metal response element binding transcription factor 2##AJ010014|MTF2|22823|metal response element binding transcription factor 2##AK302776|MTF2|22823|metal response element binding transcription factor 2##AF086908|MTF2|22823|metal response element binding transcription factor 2##BC010013|MTF2|22823|metal response element binding transcription factor 2##BC001897|MTF2|22823|metal response element binding transcription factor 2##AY359039|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016556|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AF151858|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK293308|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC016365|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK312787|TMED5|50999|transmembrane emp24 protein transport domain containing 5##CR936808|TMED5|50999|transmembrane emp24 protein transport domain containing 5##AK125882|TMED5|50999|transmembrane emp24 protein transport domain containing 5##BC070051|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_001167830|TMED5|50999|transmembrane emp24 protein transport domain containing 5##NM_016040|TMED5|50999|transmembrane emp24 protein transport domain containing 5	0.994293	0.0	denovo_WM_7:35:0.459	denovo_WM_7:36:0.459
chr4	71731243	71731329	reg1011351.p1	4.255	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-25649	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-25709	-	AK094806 NM_001098477	-26083	-	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	36827	+	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	128021	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	128185	+	NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##AK094806|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001098477|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase	0.994896	0.0	denovo_WM_7:-7:0.332	denovo_WM_7:-8:0.332	denovo_WM_7:-9:0.332
chr1	10132	10259	reg1010568.p1	4.254	+	None	None	None	None	None	None	None	None	None	TSC_hg19_v1_chr1_-_29330 AK095183 BC027921 AK092583 AK300161 AK308540 AK308566 AK309926 AK310121 AK310139 AX747611 BC063470 AK291582 BC047449 AK308574 AK302089 AL137714	19210	-	NM_001005484	58895	+	BC137547 BC137568 NM_001005221 NM_001005224 NM_001005277	357453	+	AK095183|WASH3P|374666|WAS protein family homolog 3 pseudogene##BC027921|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK092583|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK300161|WASH3P|374666|WAS protein family homolog 3 pseudogene##AK308540|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK308566|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK309926|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK310121|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK310139|WASH7P|653635|WAS protein family homolog 7 pseudogene##BC063470|WASH7P|653635|WAS protein family homolog 7 pseudogene##AK291582|WASH3P|374666|WAS protein family homolog 3 pseudogene##AK308574|WASH2P|375260|WAS protein family homolog 2 pseudogene##AK302089|WASH7P|653635|WAS protein family homolog 7 pseudogene##AL137714|WASH2P|375260|WAS protein family homolog 2 pseudogene##NM_001005484|OR4F5|79501|olfactory receptor, family 4, subfamily F, member 5##BC137547|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##BC137568|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005221|OR4F29|729759|olfactory receptor, family 4, subfamily F, member 29##NM_001005224|OR4F3|26683|olfactory receptor, family 4, subfamily F, member 3##NM_001005277|OR4F16|81399|olfactory receptor, family 4, subfamily F, member 16	0.0	0.0	
chr12	124390062	124390174	reg1010172.p1	4.254	+	NM_207437	-143077	+	TSC_hg19_v1_chr12_+_124196946 AK289391 AF112972 HQ258004	-193092	+	TSC_hg19_v1_chr12_+_124196899 BC022300	-193222	+	TSC_hg19_v1_chr12_-_124457275 AK222661 BC017186 AK026124 NM_025140	67081	-	TSC_hg19_v1_chr12_+_124457763 AL834266 NM_001204298 NM_001204299 NM_152437 BC051696 BC037793 BX647762 AK056034	67611	+	AK126577 NM_181709	383591	+	NM_207437|DNAH10|196385|dynein, axonemal, heavy chain 10##AK289391|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##AF112972|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##HQ258004|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##BC022300|ATP6V0A2|23545|ATPase, H+ transporting, lysosomal V0 subunit a2##AK222661|CCDC92|80212|coiled-coil domain containing 92##BC017186|CCDC92|80212|coiled-coil domain containing 92##AK026124|CCDC92|80212|coiled-coil domain containing 92##NM_025140|CCDC92|80212|coiled-coil domain containing 92##AL834266|ZNF664|144348|zinc finger protein 664##NM_001204298|ZNF664|144348|zinc finger protein 664##NM_001204299|ZNF664-FAM101A|100533183|protein FAM101A##NM_152437|ZNF664|144348|zinc finger protein 664##BC051696|ZNF664|144348|zinc finger protein 664##BC037793|ZNF664|144348|zinc finger protein 664##BX647762|ZNF664|144348|zinc finger protein 664##AK056034|ZNF664|144348|zinc finger protein 664##AK126577|FAM101A|144347|family with sequence similarity 101, member A##NM_181709|FAM101A|144347|family with sequence similarity 101, member A	0.992511	0.747242	CTCF.p2:-41:0.747	denovo_WM_7:63:0.227	denovo_WM_7:65:0.636
chr12	31835212	31835355	reg1016657.p1	4.254	+	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-22669	+	BC039535 NM_173802	-23163	+	AK290248 NM_001135864	-35190	+	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	46691	-	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	46773	-	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	109921	-	NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C	0.0	0.99722	CTCF.p2:-41:0.997
chr12	9497652	9497734	reg1006568.p1	4.254	+	TSC_hg19_v1_chr12_+_9436619 AK123583 AK309820	-61068	+	BC111756 AK313639 NM_002864 X54380	-136731	-	TSC_hg19_v1_chr12_-_9268536 NM_000014	-229135	-	TSC_hg19_v1_chr12_-_9600810 BC035635 BC128040 BC111733	103105	-	BC027885 BC113997 BC114516 U11276 NM_002258 AK292022	262803	-	TSC_hg19_v1_chr12_+_9800760 AK096274	303203	+	AK309820|LOC642846|642846|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like##BC111756|PZP|5858|pregnancy-zone protein##AK313639|PZP|5858|pregnancy-zone protein##NM_002864|PZP|5858|pregnancy-zone protein##X54380|PZP|5858|pregnancy-zone protein##NM_000014|A2M|2|alpha-2-macroglobulin##BC035635|DDX12P|440081|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK096274|LOC374443|374443|CLR pseudogene	1.022903	0.0	
chr7	100209608	100209750	reg1006177.p2	4.254	+	NM_002593 TSC_hg19_v1_chr7_+_100199985 AK313748 BC000574 L33799 AB008549 AK298364 BC033205 DQ891923 DQ895108	-9700	+	AK302252 NM_001163499 NM_012172 AK301864	-22456	+	TSC_hg19_v1_chr7_+_100183929 AK292240 NM_033506 BC032497 AK310487 AL136811 BC067293 BC051745	-25677	+	NM_001040097 TSC_hg19_v1_chr7_+_100209784	90	+	TSC_hg19_v1_chr7_+_100210156 NM_001040098 NM_001040099 NM_023948 BC011653 BC009482 BC028475 BC005042	393	+	TSC_hg19_v1_chr7_-_100230676 AK000421	21022	-	NM_002593|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK313748|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC000574|PCOLCE|5118|procollagen C-endopeptidase enhancer##L33799|PCOLCE|5118|procollagen C-endopeptidase enhancer##AB008549|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK298364|PCOLCE|5118|procollagen C-endopeptidase enhancer##BC033205|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ891923|PCOLCE|5118|procollagen C-endopeptidase enhancer##DQ895108|PCOLCE|5118|procollagen C-endopeptidase enhancer##AK302252|FBXO24|26261|F-box protein 24##NM_001163499|FBXO24|26261|F-box protein 24##NM_012172|FBXO24|26261|F-box protein 24##AK301864|FBXO24|26261|F-box protein 24##AK292240|FBXO24|26261|F-box protein 24##NM_033506|FBXO24|26261|F-box protein 24##BC032497|FBXO24|26261|F-box protein 24##AK310487|FBXO24|26261|F-box protein 24##AL136811|FBXO24|26261|F-box protein 24##BC067293|FBXO24|26261|F-box protein 24##BC051745|FBXO24|26261|F-box protein 24##NM_001040097|MOSPD3|64598|motile sperm domain containing 3##NM_001040098|MOSPD3|64598|motile sperm domain containing 3##NM_001040099|MOSPD3|64598|motile sperm domain containing 3##NM_023948|MOSPD3|64598|motile sperm domain containing 3##BC011653|MOSPD3|64598|motile sperm domain containing 3##BC009482|MOSPD3|64598|motile sperm domain containing 3##BC028475|MOSPD3|64598|motile sperm domain containing 3##BC005042|MOSPD3|64598|motile sperm domain containing 3##AK000421|TFR2|7036|transferrin receptor 2	0.0	0.0	
chr7	151037225	151037348	reg1016272.p1	4.254	+	BX648385 TSC_hg19_v1_chr7_-_150974229 NM_003078 U66619	-63057	-	AY450431 BC002628 NM_001003802	-63467	-	TSC_hg19_v1_chr7_-_150946031 AY450430	-91245	-	TSC_hg19_v1_chr7_+_151038874 NM_001243351 NM_016118 AF300717	1556	+	TSC_hg19_v1_chr7_+_151038909 AF459743 AY129295 AK293159 AF155099	1628	+	AK056624 TSC_hg19_v1_chr7_-_151071775	34450	-	BX648385|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##NM_003078|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##U66619|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##AY450431|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##BC002628|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##NM_001003802|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##AY450430|SMARCD3|6604|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3##NM_001243351|NUB1|51667|negative regulator of ubiquitin-like proteins 1##NM_016118|NUB1|51667|negative regulator of ubiquitin-like proteins 1##AF300717|NUB1|51667|negative regulator of ubiquitin-like proteins 1##AF459743|NUB1|51667|negative regulator of ubiquitin-like proteins 1##AY129295|NUB1|51667|negative regulator of ubiquitin-like proteins 1##AK293159|NUB1|51667|negative regulator of ubiquitin-like proteins 1##AF155099|NUB1|51667|negative regulator of ubiquitin-like proteins 1	0.0	0.0	
chr1	207970788	207970896	reg1009852.p2	4.253	+	TSC_hg19_v1_chr1_+_207925420 BX537451 BX640613 BX649050 X59405 X59408 AK291227 AK296819 BC026273 BC030594 X59406 X59407 X59409 X59410 AK222822 BC007046 S51940 Y00651 EF076055 EF076056 EF076057 EF076058 M58050 D84105 AB462973 DQ890901 DQ894054 AF209712 AF209713 AF209714	-45359	+	TSC_hg19_v1_chr1_+_207925400 NM_002389 NM_153826 NM_172350 NM_172351 NM_172352 NM_172353 NM_172359 NM_172361	-45449	+	NM_175710 BC109190 BC109191	-152355	+	BX640941 TSC_hg19_v1_chr1_-_208059392	88481	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	113541	-	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	113715	-	BX537451|CD46|4179|CD46 molecule, complement regulatory protein##BX640613|CD46|4179|CD46 molecule, complement regulatory protein##BX649050|CD46|4179|CD46 molecule, complement regulatory protein##X59405|CD46|4179|CD46 molecule, complement regulatory protein##X59408|CD46|4179|CD46 molecule, complement regulatory protein##AK291227|CD46|4179|CD46 molecule, complement regulatory protein##AK296819|CD46|4179|CD46 molecule, complement regulatory protein##BC026273|CD46|4179|CD46 molecule, complement regulatory protein##BC030594|CD46|4179|CD46 molecule, complement regulatory protein##X59406|CD46|4179|CD46 molecule, complement regulatory protein##X59407|CD46|4179|CD46 molecule, complement regulatory protein##X59409|CD46|4179|CD46 molecule, complement regulatory protein##X59410|CD46|4179|CD46 molecule, complement regulatory protein##AK222822|CD46|4179|CD46 molecule, complement regulatory protein##BC007046|CD46|4179|CD46 molecule, complement regulatory protein##S51940|CD46|4179|CD46 molecule, complement regulatory protein##Y00651|CD46|4179|CD46 molecule, complement regulatory protein##EF076055|CD46|4179|CD46 molecule, complement regulatory protein##EF076056|CD46|4179|CD46 molecule, complement regulatory protein##EF076057|CD46|4179|CD46 molecule, complement regulatory protein##EF076058|CD46|4179|CD46 molecule, complement regulatory protein##M58050|CD46|4179|CD46 molecule, complement regulatory protein##D84105|CD46|4179|CD46 molecule, complement regulatory protein##DQ890901|CD46|4179|CD46 molecule, complement regulatory protein##DQ894054|CD46|4179|CD46 molecule, complement regulatory protein##AF209712|CD46|4179|CD46 molecule, complement regulatory protein##AF209713|CD46|4179|CD46 molecule, complement regulatory protein##AF209714|CD46|4179|CD46 molecule, complement regulatory protein##NM_002389|CD46|4179|CD46 molecule, complement regulatory protein##NM_153826|CD46|4179|CD46 molecule, complement regulatory protein##NM_172350|CD46|4179|CD46 molecule, complement regulatory protein##NM_172351|CD46|4179|CD46 molecule, complement regulatory protein##NM_172352|CD46|4179|CD46 molecule, complement regulatory protein##NM_172353|CD46|4179|CD46 molecule, complement regulatory protein##NM_172359|CD46|4179|CD46 molecule, complement regulatory protein##NM_172361|CD46|4179|CD46 molecule, complement regulatory protein##NM_175710|CR1L|1379|complement component (3b/4b) receptor 1-like##BC109190|CR1L|1379|complement component (3b/4b) receptor 1-like##BC109191|CR1L|1379|complement component (3b/4b) receptor 1-like##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule	0.998694	0.51812	CTCF.p2:20:0.518	denovo_WM_7:-83:0.477	denovo_WM_7:-84:0.477
chr2	109437085	109437256	reg1011664.p2	4.253	+	TSC_hg19_v1_chr2_+_109403228 BC050579 AK125199 AK057307 NM_144978 BC015847 BC038421	-33968	+	TSC_hg19_v1_chr2_+_109384621 AY170822	-52487	+	TSC_hg19_v1_chr2_+_109335970 D42063 NM_006267	-101232	+	TSC_hg19_v1_chr2_-_109605623 AK296936	168449	-	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	168577	-	NM_001099289 DQ307286	308893	+	BC050579|CCDC138|165055|coiled-coil domain containing 138##AK125199|CCDC138|165055|coiled-coil domain containing 138##AK057307|CCDC138|165055|coiled-coil domain containing 138##NM_144978|CCDC138|165055|coiled-coil domain containing 138##BC015847|CCDC138|165055|coiled-coil domain containing 138##BC038421|CCDC138|165055|coiled-coil domain containing 138##AY170822|RANBP2|5903|RAN binding protein 2##D42063|RANBP2|5903|RAN binding protein 2##NM_006267|RANBP2|5903|RAN binding protein 2##AK296936|EDAR|10913|ectodysplasin A receptor##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3	0.984413	0.0	denovo_WM_7:-6:0.487	denovo_WM_7:-7:0.487
chr22	17717898	17718073	reg1012371.p1	4.253	+	AK314321 TSC_hg19_v1_chr22_-_17700267 AK295174 AK292689	-17622	-	AF190746 NM_017424	-27207	-	TSC_hg19_v1_chr22_-_17680487 AK027682 AK074702 NM_177405	-37471	-	TSC_hg19_v1_chr22_-_17747522 AF277398	29586	-	TSC_hg19_v1_chr22_+_18043149 AJ428203 AY008285 NM_031481 BC031644 AK308974 AK095706 AK309110	325234	+	BT007128 CU012943 CU013231 EU831478 EU831565 AB528072 CR456385 X71491 TSC_hg19_v1_chr22_-_18111488 X76228 BC004443	393460	-	AK314321|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK295174|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK292689|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF190746|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_017424|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK027682|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AK074702|CECR1|51816|cat eye syndrome chromosome region, candidate 1##NM_177405|CECR1|51816|cat eye syndrome chromosome region, candidate 1##AF277398|CECR3|27442|cat eye syndrome chromosome region, candidate 3 (non-protein coding)##AJ428203|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AY008285|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##NM_031481|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BC031644|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK308974|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK095706|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##AK309110|SLC25A18|83733|solute carrier family 25 (mitochondrial carrier), member 18##BT007128|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU012943|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CU013231|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831478|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##EU831565|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##CR456385|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X71491|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##X76228|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1##BC004443|ATP6V1E1|529|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1	0.0	0.0	
chr2	234230822	234230933	reg1013565.p1	4.253	+	NM_000541	-14569	+	TSC_hg19_v1_chr2_+_234160377 AB590490 EF079889 EF079890 BC117337 BC143900	-70413	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	-70520	+	TSC_hg19_v1_chr2_+_234263150 AB078966 NM_152879	32269	+	TSC_hg19_v1_chr2_+_234263153 D63479	32335	+	D73409 NM_003648	65922	+	NM_000541|SAG|6295|S-antigen; retina and pineal gland (arrestin)##EF079889|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF079890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC117337|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC143900|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AB078966|DGKD|8527|diacylglycerol kinase, delta 130kDa##NM_152879|DGKD|8527|diacylglycerol kinase, delta 130kDa##D63479|DGKD|8527|diacylglycerol kinase, delta 130kDa##D73409|DGKD|8527|diacylglycerol kinase, delta 130kDa##NM_003648|DGKD|8527|diacylglycerol kinase, delta 130kDa	0.999644	0.0	
chr3	170790343	170790471	reg1012862.p2	4.253	+	NM_000340	-45640	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-45874	-	AB528020 J03810 TSC_hg19_v1_chr3_-_170744510 AK313622 BC060041 AK290846 AK292741	-45917	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	387664	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	737848	-	NM_001164436 AK026825	770741	+	NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##J03810|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK313622|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##BC060041|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK290846|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK292741|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212	0.97054	0.0	denovo_WM_7:-18:0.971
chr6	135466177	135466357	reg1011182.p1	4.253	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-90273	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-90379	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-195035	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	36181	+	TSC_hg19_v1_chr6_+_135502507 BC064955	36228	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	36319	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr7	148824375	148824464	reg1006143.p1	4.253	+	TSC_hg19_v1_chr7_+_148823499 AY049743 NM_020781	-917	+	TSC_hg19_v1_chr7_-_148823395 NM_001001661	-1006	-	TSC_hg19_v1_chr7_-_148823339 AK125575 BC125189 AK056498 AY621067	-1082	-	TSC_hg19_v1_chr7_+_148844532 AK026380 NM_170686 BC043295 AK290499	20110	+	TSC_hg19_v1_chr7_+_148844772 AY049744 AB527270 CU692152	20340	+	D30612 TSC_hg19_v1_chr7_+_148892683 NM_003575 AK299280 BC073805 AK316282 AB587508 BC055287 BC041704	68270	+	AY049743|ZNF398|57541|zinc finger protein 398##NM_020781|ZNF398|57541|zinc finger protein 398##NM_001001661|ZNF425|155054|zinc finger protein 425##BC125189|ZNF425|155054|zinc finger protein 425##AK056498|ZNF425|155054|zinc finger protein 425##AY621067|ZNF425|155054|zinc finger protein 425##AK026380|ZNF398|57541|zinc finger protein 398##NM_170686|ZNF398|57541|zinc finger protein 398##BC043295|ZNF398|57541|zinc finger protein 398##AK290499|ZNF398|57541|zinc finger protein 398##AY049744|ZNF398|57541|zinc finger protein 398##D30612|ZNF282|8427|zinc finger protein 282##NM_003575|ZNF282|8427|zinc finger protein 282##AK299280|ZNF282|8427|zinc finger protein 282##BC073805|ZNF282|8427|zinc finger protein 282##AK316282|ZNF282|8427|zinc finger protein 282##BC055287|ZNF282|8427|zinc finger protein 282##BC041704|ZNF282|8427|zinc finger protein 282	0.733517	0.0	denovo_WM_7:68:0.527
chr8	126230491	126230657	reg1008030.p2	4.253	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-126477	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-126517	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-126552	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	212005	+	TSC_hg19_v1_chr8_-_126963395 BX648371	732839	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1339981	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.997017	0.0	denovo_WM_7:90:0.985
chr1	116518740	116518877	reg1005148.p1	4.252	+	BC096359 BC096360 TSC_hg19_v1_chr1_-_116383744 M96740 NM_005599	-135088	-	AK307156 TSC_hg19_v1_chr1_-_116383325 NM_001111061 AK312849	-135466	-	BC096361 BC096362 TSC_hg19_v1_chr1_+_116380417 AB007959 BC028729	-138351	+	NM_018420 BC026358 TSC_hg19_v1_chr1_+_116519161	335	+	TSC_hg19_v1_chr1_+_116519194 BC070033 AY358258 AY145501 CU693234 DQ892367 DQ895576	421	+	AK096035 NM_152367	135567	+	BC096359|NHLH2|4808|nescient helix loop helix 2##BC096360|NHLH2|4808|nescient helix loop helix 2##M96740|NHLH2|4808|nescient helix loop helix 2##NM_005599|NHLH2|4808|nescient helix loop helix 2##NM_001111061|NHLH2|4808|nescient helix loop helix 2##AK312849|NHLH2|4808|nescient helix loop helix 2##AB007959|NHLH2|4808|nescient helix loop helix 2##BC028729|NHLH2|4808|nescient helix loop helix 2##NM_018420|SLC22A15|55356|solute carrier family 22, member 15##BC026358|SLC22A15|55356|solute carrier family 22, member 15##BC070033|SLC22A15|55356|solute carrier family 22, member 15##AY358258|SLC22A15|55356|solute carrier family 22, member 15##AY145501|SLC22A15|55356|solute carrier family 22, member 15##DQ892367|SLC22A15|55356|solute carrier family 22, member 15##DQ895576|SLC22A15|55356|solute carrier family 22, member 15##AK096035|MAB21L3|126868|mab-21-like 3 (C. elegans)##NM_152367|MAB21L3|126868|mab-21-like 3 (C. elegans)	0.0	0.0	
chr1	153630558	153630738	reg1010448.p1	4.252	+	NM_001024210	-24081	-	AF318362 AK095230 AK308713 TSC_hg19_v1_chr1_+_153606555 AK309844	-24086	+	NM_001206612 NM_001244664 NM_015607 TSC_hg19_v1_chr1_+_153606541 AF261137	-24147	+	NM_012437 AK024555 TSC_hg19_v1_chr1_+_153631192	520	+	TSC_hg19_v1_chr1_+_153631199 BC004494 BC000761 AB590618 AF086837 BT006753	558	+	TSC_hg19_v1_chr1_-_153643421 AK223326	12774	-	NM_001024210|S100A13|6284|S100 calcium binding protein A13##AF318362|CHTOP|26097|chromatin target of PRMT1##AK095230|CHTOP|26097|chromatin target of PRMT1##AK308713|CHTOP|26097|chromatin target of PRMT1##AK309844|CHTOP|26097|chromatin target of PRMT1##NM_001206612|CHTOP|26097|chromatin target of PRMT1##NM_001244664|CHTOP|26097|chromatin target of PRMT1##NM_015607|CHTOP|26097|chromatin target of PRMT1##AF261137|CHTOP|26097|chromatin target of PRMT1##NM_012437|SNAPIN|23557|SNAP-associated protein##AK024555|SNAPIN|23557|SNAP-associated protein##BC004494|SNAPIN|23557|SNAP-associated protein##BC000761|SNAPIN|23557|SNAP-associated protein##AF086837|SNAPIN|23557|SNAP-associated protein##BT006753|SNAPIN|23557|SNAP-associated protein##AK223326|ILF2|3608|interleukin enhancer binding factor 2, 45kDa	1.011696	0.0	
chr12	776100	776280	reg1009090.p2	4.252	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-3475	-	TSC_hg19_v1_chr12_-_752800 AK298043	-23371	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-24012	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	85966	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	86566	+	BC013629 TSC_hg19_v1_chr12_+_1017145	240892	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.0	0.0	
chr2	198873174	198873308	reg1016454.p1	4.252	+	TSC_hg19_v1_chr2_+_198669316 AK127514 NM_006226	-203871	+	NM_197970 AK302817	-222255	-	AF272858 BC033674 AK098824 AK058099 NM_033030	-223201	-	TSC_hg19_v1_chr2_-_200213802 AK025127	1340609	-	TSC_hg19_v1_chr2_-_200320780 EU446695 BC098136 BC099723 BC103492 BC103500	1447561	-	TSC_hg19_v1_chr2_-_200322238 AJ438951	1449009	-	AK127514|PLCL1|5334|phospholipase C-like 1##NM_006226|PLCL1|5334|phospholipase C-like 1##NM_197970|BOLL|66037|bol, boule-like (Drosophila)##AK302817|BOLL|66037|bol, boule-like (Drosophila)##AF272858|BOLL|66037|bol, boule-like (Drosophila)##BC033674|BOLL|66037|bol, boule-like (Drosophila)##AK098824|BOLL|66037|bol, boule-like (Drosophila)##AK058099|BOLL|66037|bol, boule-like (Drosophila)##NM_033030|BOLL|66037|bol, boule-like (Drosophila)##AK025127|SATB2|23314|SATB homeobox 2##EU446695|SATB2|23314|SATB homeobox 2##BC098136|SATB2|23314|SATB homeobox 2##BC099723|SATB2|23314|SATB homeobox 2##BC103492|SATB2|23314|SATB homeobox 2##BC103500|SATB2|23314|SATB homeobox 2##AJ438951|SATB2|23314|SATB homeobox 2	0.998053	0.0	denovo_WM_7:23:0.840
chr3	196797171	196797252	reg1013033.p2	4.252	+	TSC_hg19_v1_chr3_-_196756689 NM_033316 NM_005929	-40509	-	BT007377 AB527337 M12154 BC093920 BC111947 BC143257 BC002623 BC001875 BC007550 BC053510 BC071910 TSC_hg19_v1_chr3_-_196756658 BC032752	-40588	-	BC032042 TSC_hg19_v1_chr3_+_196729798	-67401	+	AK294855 NM_001204387 NM_001204388	113790	-	TSC_hg19_v1_chr3_-_197024987 BC015560 BC028486 AK310893	227722	-	BC140841 BC144651 TSC_hg19_v1_chr3_-_197025506 AK304280 NM_001098424 NM_001204386 NM_004087 U13896 U13897 AK310596	228263	-	NM_033316|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##NM_005929|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BT007377|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##M12154|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC093920|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC111947|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC143257|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC002623|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC001875|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC007550|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC053510|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC071910|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032752|MFI2|4241|antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5##BC032042|MFI2-AS1|100507057|MFI2 antisense RNA 1 (non-protein coding)##AK294855|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204387|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204388|DLG1|1739|discs, large homolog 1 (Drosophila)##BC015560|DLG1|1739|discs, large homolog 1 (Drosophila)##BC028486|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310893|DLG1|1739|discs, large homolog 1 (Drosophila)##BC140841|DLG1|1739|discs, large homolog 1 (Drosophila)##BC144651|DLG1|1739|discs, large homolog 1 (Drosophila)##AK304280|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001098424|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_001204386|DLG1|1739|discs, large homolog 1 (Drosophila)##NM_004087|DLG1|1739|discs, large homolog 1 (Drosophila)##U13896|DLG1|1739|discs, large homolog 1 (Drosophila)##U13897|DLG1|1739|discs, large homolog 1 (Drosophila)##AK310596|DLG1|1739|discs, large homolog 1 (Drosophila)	1.998689	0.0	denovo_WM_7:85:0.765	denovo_WM_7:-92:0.425	denovo_WM_7:-93:0.425
chr3	63898164	63898270	reg1011180.p2	4.252	+	NM_001177387	-14143	+	TSC_hg19_v1_chr3_+_63850212 AF032104 AF032105 NM_000333 AJ000517	-48009	+	TSC_hg19_v1_chr3_-_63849703 AK027098 AF104914 NM_025075	-48561	-	NM_001128149 AK310745 AK304062	55240	+	AF530062 AB463196 TSC_hg19_v1_chr3_-_64009149 BC000630 AK095059 AY568086 D14663 NM_014814 BC012369 BC000904 AK290205 BX647742 AF215935	110933	-	BC119002 AL833539 NM_198859	312903	-	NM_001177387|ATXN7|6314|ataxin 7##AF032104|ATXN7|6314|ataxin 7##AF032105|ATXN7|6314|ataxin 7##NM_000333|ATXN7|6314|ataxin 7##AJ000517|ATXN7|6314|ataxin 7##AK027098|THOC7|80145|THO complex 7 homolog (Drosophila)##AF104914|THOC7|80145|THO complex 7 homolog (Drosophila)##NM_025075|THOC7|80145|THO complex 7 homolog (Drosophila)##NM_001128149|ATXN7|6314|ataxin 7##AK310745|ATXN7|6314|ataxin 7##AK304062|ATXN7|6314|ataxin 7##AF530062|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000630|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK095059|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AY568086|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##D14663|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##NM_014814|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC012369|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC000904|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AK290205|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BX647742|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##AF215935|PSMD6|9861|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6##BC119002|PRICKLE2|166336|prickle homolog 2 (Drosophila)##AL833539|PRICKLE2|166336|prickle homolog 2 (Drosophila)##NM_198859|PRICKLE2|166336|prickle homolog 2 (Drosophila)	0.0	0.0	
chr5	139012910	139013085	reg1009350.p2	4.252	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	-71649	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-72072	+	TSC_hg19_v1_chr5_+_138940760 BC033349 NM_003339 NM_181838 BC048426	-72224	+	TSC_hg19_v1_chr5_+_139027874 AK024338	14877	+	TSC_hg19_v1_chr5_+_139027942 BC006428	14933	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	14987	+	U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC033349|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_003339|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##NM_181838|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC048426|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK024338|CXXC5|51523|CXXC finger protein 5##BC006428|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5	0.0	0.999567	CTCF.p2:56:1.000
chr1	119551400	119551534	reg1012219.p2	4.251	+	AK127536 NM_152380	-19289	-	AB527095 AK091816 AX747199 AY555274 BX648110 NM_206996	-823654	-	TSC_hg19_v1_chr1_+_118472364 NM_006784 AK292438 AF083217 BC128385 BC128454 BC148244	-1079089	+	TSC_hg19_v1_chr1_+_119683039 BC063600 BC043601	131559	+	TSC_hg19_v1_chr1_-_119683274 BC021722 CU692202 BC039889 AK223197 AJ242739 AK296799 BC044575 AK313740 AK300295 NM_015836 NM_201263	131802	-	TSC_hg19_v1_chr1_+_119911431 AK298289 NM_001005783 NM_016527 BC020863 AF231917 AF203975 AY513277	359977	+	AK127536|TBX15|6913|T-box 15##NM_152380|TBX15|6913|T-box 15##AK091816|SPAG17|200162|sperm associated antigen 17##AY555274|SPAG17|200162|sperm associated antigen 17##BX648110|SPAG17|200162|sperm associated antigen 17##NM_206996|SPAG17|200162|sperm associated antigen 17##NM_006784|WDR3|10885|WD repeat domain 3##AK292438|WDR3|10885|WD repeat domain 3##AF083217|WDR3|10885|WD repeat domain 3##BC021722|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC039889|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK223197|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AJ242739|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK296799|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##BC044575|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK313740|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK300295|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_015836|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##NM_201263|WARS2|10352|tryptophanyl tRNA synthetase 2, mitochondrial##AK298289|HAO2|51179|hydroxyacid oxidase 2 (long chain)##NM_001005783|HAO2|51179|hydroxyacid oxidase 2 (long chain)##NM_016527|HAO2|51179|hydroxyacid oxidase 2 (long chain)##BC020863|HAO2|51179|hydroxyacid oxidase 2 (long chain)##AF231917|HAO2|51179|hydroxyacid oxidase 2 (long chain)##AF203975|HAO2|51179|hydroxyacid oxidase 2 (long chain)##AY513277|HAO2|51179|hydroxyacid oxidase 2 (long chain)	0.0	0.20991	CTCF.p2:22:0.210
chr11	350876	350983	reg1012352.p2	4.251	+	TSC_hg19_v1_chr11_-_320925 X57352	-29942	-	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	-30085	-	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	-36918	+	TSC_hg19_v1_chr11_+_369724 NM_178537 AB089939 BC131528	18836	+	TSC_hg19_v1_chr11_+_394208 BC000081 NM_007183 AK025067 AK223511 Z98265	43283	+	AF053719 TSC_hg19_v1_chr11_+_394242 DQ891692 DQ894875 CU674026	43335	+	X57352|IFITM3|10410|interferon induced transmembrane protein 3##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_178537|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##AB089939|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC131528|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC000081|PKP3|11187|plakophilin 3##NM_007183|PKP3|11187|plakophilin 3##AK025067|PKP3|11187|plakophilin 3##AK223511|PKP3|11187|plakophilin 3##Z98265|PKP3|11187|plakophilin 3##AF053719|PKP3|11187|plakophilin 3##DQ891692|PKP3|11187|plakophilin 3##DQ894875|PKP3|11187|plakophilin 3	0.145137	0.0	
chr15	102181258	102181438	reg1001329.p1	4.251	+	TSC_hg19_v1_chr15_-_102030140 NM_002570 NM_138319 NM_138320 NM_138321 NM_138322 NM_138323 NM_138324 NM_138325	-151186	-	TSC_hg19_v1_chr15_-_102029995 M80482 M80482	-151315	-	TSC_hg19_v1_chr15_-_102029982 D87993 D87994 D87995	-151393	-	TSC_hg19_v1_chr15_-_102192580 BC006150 BC008873 AF353992 AK315584 AK297048 AK026257 AK296553 NM_025141 NM_078474	11118	-	TSC_hg19_v1_chr15_-_102264638 BC132671 BC136315 BC143943 AK056653 AX721055 NM_152334	83307	-	BC137002 BC137003 NM_001005326	164563	+	NM_002570|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138319|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138320|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138321|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138322|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138323|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138324|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138325|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##M80482|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##M80482|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87993|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87994|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##D87995|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##BC006150|TM2D3|80213|TM2 domain containing 3##BC008873|TM2D3|80213|TM2 domain containing 3##AF353992|TM2D3|80213|TM2 domain containing 3##AK315584|TM2D3|80213|TM2 domain containing 3##AK297048|TM2D3|80213|TM2 domain containing 3##AK026257|TM2D3|80213|TM2 domain containing 3##AK296553|TM2D3|80213|TM2 domain containing 3##NM_025141|TM2D3|80213|TM2 domain containing 3##NM_078474|TM2D3|80213|TM2 domain containing 3##BC132671|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC136315|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC143943|TARSL2|123283|threonyl-tRNA synthetase-like 2##AK056653|TARSL2|123283|threonyl-tRNA synthetase-like 2##NM_152334|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC137002|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##BC137003|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##NM_001005326|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6	0.0	0.0	
chr16	29749900	29750053	reg1012743.p1	4.251	+	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-59494	+	AK293195 NM_014298 TSC_hg19_v1_chr16_+_29690460	-59582	+	TSC_hg19_v1_chr16_+_29674982 AB464706 DQ892262 DQ895464	-74962	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	7325	-	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	39610	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	52075	+	BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK293195|QPRT|23475|quinolinate phosphoribosyltransferase##NM_014298|QPRT|23475|quinolinate phosphoribosyltransferase##DQ892262|SPN|6693|sialophorin##DQ895464|SPN|6693|sialophorin##BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22	0.0	0.0	
chr18	54745192	54745290	reg1015758.p1	4.251	+	TSC_hg19_v1_chr18_+_54424445 BC050352	-320793	+	TSC_hg19_v1_chr18_+_54318593 AK057141 NM_015285 NM_052834 AB011113 BC150282	-426635	+	TSC_hg19_v1_chr18_-_54305956 BC001156 AF003938 NM_004786	-439327	-	AK127964 TSC_hg19_v1_chr18_+_54814333 BC021740 BC035018 AK301799	69098	+	AB208996 NM_015879	274479	+	TSC_hg19_v1_chr18_+_55102810 NM_004852 Y18198 BC108925 BC108926	357624	+	BC050352|WDR7|23335|WD repeat domain 7##AK057141|WDR7|23335|WD repeat domain 7##NM_015285|WDR7|23335|WD repeat domain 7##NM_052834|WDR7|23335|WD repeat domain 7##AB011113|WDR7|23335|WD repeat domain 7##BC150282|WDR7|23335|WD repeat domain 7##BC001156|TXNL1|9352|thioredoxin-like 1##AF003938|TXNL1|9352|thioredoxin-like 1##NM_004786|TXNL1|9352|thioredoxin-like 1##AK127964|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##BC021740|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##BC035018|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##AK301799|BOD1P|284257|biorientation of chromosomes in cell division 1 pseudogene##AB208996|ST8SIA3|51046|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3##NM_015879|ST8SIA3|51046|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3##NM_004852|ONECUT2|9480|one cut homeobox 2##Y18198|ONECUT2|9480|one cut homeobox 2##BC108925|ONECUT2|9480|one cut homeobox 2##BC108926|ONECUT2|9480|one cut homeobox 2	0.0	0.012594	
chr2	13760286	13760376	reg1015111.p1	4.251	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-901934	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-902415	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-903078	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1012490	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1012520	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	1941098	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	2.978641	0.0	denovo_WM_7:53:0.884	denovo_WM_7:72:0.305	denovo_WM_7:73:0.244	denovo_WM_7:90:0.257	denovo_WM_7:91:0.318
chr3	56927837	56927995	reg1013064.p1	4.251	+	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	-92005	-	AK293864 AB209661 NM_001128616	-118247	-	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-210709	-	AY221117 NM_181727 BC126274 BC136498	166587	+	AF433662 AK302493 NM_001128615	185397	-	AF458067 TSC_hg19_v1_chr3_-_57199347	271417	-	AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF458067|IL17RD|54756|interleukin 17 receptor D	1.995491	0.0	
chr4	99845099	99845251	reg1014574.p1	4.251	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	-265416	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-662581	+	CU691442 BC036870 NM_174952	-780830	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	5085	-	M15353 TSC_hg19_v1_chr4_-_99850288	5116	-	NM_001130679 NM_001968 BC035166	6611	-	BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E##BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E	0.98924	0.0	denovo_WM_7:61:0.258	denovo_WM_7:64:0.551
chr11	73298123	73298256	reg1012359.p1	4.250	+	TSC_hg19_v1_chr11_+_73087683 AF319553 NM_032871	-210498	+	TSC_hg19_v1_chr11_+_73087471 AK027899 NM_152222 BC051810 BC017279	-210752	+	TSC_hg19_v1_chr11_-_73020422 AK300095	-277766	-	D87470 TSC_hg19_v1_chr11_-_73309158 AK292054 EF197985 BC052341 EF363480 NM_015159	11009	-	AF101054 NM_001130033 NM_021200 U89715	59033	+	NM_001130034 NM_001130035 BC008075 AB209716 AK289620 TSC_hg19_v1_chr11_+_73358695 AK296033 AK301299 AF093249 AF100612 AK289909 AK311158	60474	+	AF319553|RELT|84957|RELT tumor necrosis factor receptor##NM_032871|RELT|84957|RELT tumor necrosis factor receptor##AK027899|RELT|84957|RELT tumor necrosis factor receptor##NM_152222|RELT|84957|RELT tumor necrosis factor receptor##BC051810|RELT|84957|RELT tumor necrosis factor receptor##BC017279|RELT|84957|RELT tumor necrosis factor receptor##AK300095|LOC100287837|100287837|uncharacterized LOC100287837##D87470|FAM168A|23201|family with sequence similarity 168, member A##AK292054|FAM168A|23201|family with sequence similarity 168, member A##EF197985|FAM168A|23201|family with sequence similarity 168, member A##BC052341|FAM168A|23201|family with sequence similarity 168, member A##EF363480|FAM168A|23201|family with sequence similarity 168, member A##NM_015159|FAM168A|23201|family with sequence similarity 168, member A##AF101054|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_021200|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##U89715|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130034|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##NM_001130035|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##BC008075|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AB209716|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289620|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK296033|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK301299|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF093249|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AF100612|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK289909|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1##AK311158|PLEKHB1|58473|pleckstrin homology domain containing, family B (evectins) member 1	1.10744	0.0	
chr12	57025869	57025983	reg1014590.p1	4.250	+	AK023842 TSC_hg19_v1_chr12_-_57024088	-1884	-	AK023830 TSC_hg19_v1_chr12_-_57009380	-16550	-	AF000422 TSC_hg19_v1_chr12_-_57006969	-19010	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	4200	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	13829	-	TSC_hg19_v1_chr12_-_57039785 NM_001686	13900	-	AK023842|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK023830|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AF000422|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide	0.0	0.0	
chr13	24849112	24849250	reg1014967.p2	4.250	+	TSC_hg19_v1_chr13_+_24844889 AK297394 AK298717 AK123031	-4283	+	AK299981 AK301149 TSC_hg19_v1_chr13_+_24825840	-23346	+	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	-114286	+	BC040438 NM_178540 AY358145	34536	+	TSC_hg19_v1_chr13_-_25086917 BC017815 AF057160 AK304399 AF158255 NM_006437	237730	-	AK292968 NM_001185085 NM_001676	405367	+	AK297394|SPATA13|221178|spermatogenesis associated 13##AK298717|SPATA13|221178|spermatogenesis associated 13##AK123031|SPATA13|221178|spermatogenesis associated 13##AK299981|SPATA13|221178|spermatogenesis associated 13##AK301149|SPATA13|221178|spermatogenesis associated 13##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13##BC040438|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##NM_178540|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##AY358145|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##BC017815|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF057160|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AK304399|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF158255|PARP4|143|poly (ADP-ribose) polymerase family, member 4##NM_006437|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AK292968|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001185085|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001676|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide	0.0	0.0	
chr16	23348059	23348239	reg1002264.p3	4.250	+	NM_000336 BC036352 X87159 AK313192	-34522	+	U48936 BC059391 NM_001039 TSC_hg19_v1_chr16_+_23194066	-154097	+	AK126752 TSC_hg19_v1_chr16_-_23160566 AJ586135 NM_020718	-187600	-	TSC_hg19_v1_chr16_-_23464487 BC000549 BC037563 NM_153603	116346	-	TSC_hg19_v1_chr16_-_23521748 AB384559 CU674130 DQ892534 DQ895745 BC050620 AF165531	173586	-	AF190863 AF323754 AF233522 TSC_hg19_v1_chr16_-_23521769	173613	-	NM_000336|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##BC036352|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##X87159|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##AK313192|SCNN1B|6338|sodium channel, nonvoltage-gated 1, beta##U48936|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##BC059391|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##NM_001039|SCNN1G|6340|sodium channel, nonvoltage-gated 1, gamma##AK126752|USP31|57478|ubiquitin specific peptidase 31##AJ586135|USP31|57478|ubiquitin specific peptidase 31##NM_020718|USP31|57478|ubiquitin specific peptidase 31##BC000549|COG7|91949|component of oligomeric golgi complex 7##BC037563|COG7|91949|component of oligomeric golgi complex 7##NM_153603|COG7|91949|component of oligomeric golgi complex 7##DQ892534|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##DQ895745|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##BC050620|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF165531|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF190863|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF323754|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2##AF233522|GGA2|23062|golgi-associated, gamma adaptin ear containing, ARF binding protein 2	0.05086	0.0	
chr3	52716220	52716295	reg1009340.p1	4.250	+	AY281068 AF177387 AF225870 AF225871 AF225872 BC115009 BC115010 BC115011 BC116450 BC129934 BC129935 NM_018165 NM_181042	-2524	-	AK095910 BC017996 NM_001124767 TSC_hg19_v1_chr3_+_52570620	-145631	+	BC047747 TSC_hg19_v1_chr3_-_52569042 AK023995 NM_022908	-147201	-	TSC_hg19_v1_chr3_-_52719930 AF197569 NM_018313	3512	-	AF191018 NM_014366 NM_206825 NM_206826 TSC_hg19_v1_chr3_+_52720047 AK315484 AK027514 AK297634 AK027516 BC001024 AB463711 CU674504 EU831969 EU832062	3764	+	BC119670 BC119671 AK027517 NM_152932 AY358579	21359	-	AY281068|PBRM1|55193|polybromo 1##AF177387|PBRM1|55193|polybromo 1##AF225870|PBRM1|55193|polybromo 1##AF225871|PBRM1|55193|polybromo 1##AF225872|PBRM1|55193|polybromo 1##BC115009|PBRM1|55193|polybromo 1##BC115010|PBRM1|55193|polybromo 1##BC115011|PBRM1|55193|polybromo 1##BC116450|PBRM1|55193|polybromo 1##BC129934|PBRM1|55193|polybromo 1##BC129935|PBRM1|55193|polybromo 1##NM_018165|PBRM1|55193|polybromo 1##NM_181042|PBRM1|55193|polybromo 1##AK095910|C3orf78|440957|chromosome 3 open reading frame 78##BC017996|C3orf78|440957|chromosome 3 open reading frame 78##NM_001124767|C3orf78|440957|chromosome 3 open reading frame 78##BC047747|NT5DC2|64943|5'-nucleotidase domain containing 2##AK023995|NT5DC2|64943|5'-nucleotidase domain containing 2##NM_022908|NT5DC2|64943|5'-nucleotidase domain containing 2##AF197569|PBRM1|55193|polybromo 1##NM_018313|PBRM1|55193|polybromo 1##AF191018|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_014366|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206825|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##NM_206826|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK315484|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027514|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##AK027516|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC001024|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU831969|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##EU832062|GNL3|26354|guanine nucleotide binding protein-like 3 (nucleolar)##BC119670|GLT8D1|55830|glycosyltransferase 8 domain containing 1##BC119671|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AK027517|GLT8D1|55830|glycosyltransferase 8 domain containing 1##NM_152932|GLT8D1|55830|glycosyltransferase 8 domain containing 1##AY358579|GLT8D1|55830|glycosyltransferase 8 domain containing 1	0.0	0.0	
chr5	90567898	90568039	reg1009282.p2	4.250	+	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-713354	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-742602	-	NM_006467 AK295434 U93868	-797266	+	AK091866 TSC_hg19_v1_chr5_-_90610220	42277	-	TSC_hg19_v1_chr5_+_90676181 BC043415	108194	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	111164	-	AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3	0.998148	0.0	denovo_WM_7:-77:0.951
chr1	17758561	17758662	reg1008239.p2	4.249	+	AY443100 AB527380 AY422079 NM_207421	-59896	+	AF229067 AK314839 NM_012387 AB017919 AK290507 AK309637 BC025718 AB527709 CU693030	-123908	+	AB026831 NM_016233 BC109091 BC041592 BC109092	-183012	+	BC142946 TSC_hg19_v1_chr1_-_17764885	6251	-	TSC_hg19_v1_chr1_-_17765031 AB384219 BC042141	6399	-	TSC_hg19_v1_chr1_-_17765069 BC053908 NM_001136204	6450	-	AY443100|PADI6|353238|peptidyl arginine deiminase, type VI##AY422079|PADI6|353238|peptidyl arginine deiminase, type VI##NM_207421|PADI6|353238|peptidyl arginine deiminase, type VI##AF229067|PADI4|23569|peptidyl arginine deiminase, type IV##AK314839|PADI4|23569|peptidyl arginine deiminase, type IV##NM_012387|PADI4|23569|peptidyl arginine deiminase, type IV##AB017919|PADI4|23569|peptidyl arginine deiminase, type IV##AK290507|PADI4|23569|peptidyl arginine deiminase, type IV##AK309637|PADI4|23569|peptidyl arginine deiminase, type IV##BC025718|PADI4|23569|peptidyl arginine deiminase, type IV##AB026831|PADI3|51702|peptidyl arginine deiminase, type III##NM_016233|PADI3|51702|peptidyl arginine deiminase, type III##BC109091|PADI3|51702|peptidyl arginine deiminase, type III##BC041592|PADI3|51702|peptidyl arginine deiminase, type III##BC109092|PADI3|51702|peptidyl arginine deiminase, type III##BC142946|RCC2|55920|regulator of chromosome condensation 2##BC042141|RCC2|55920|regulator of chromosome condensation 2##BC053908|RCC2|55920|regulator of chromosome condensation 2##NM_001136204|RCC2|55920|regulator of chromosome condensation 2	0.961369	0.0	denovo_WM_7:-15:0.795
chr16	87491757	87491842	reg1007318.p2	4.249	+	TSC_hg19_v1_chr16_+_87425998 AF303888 AM393561 DQ893152 DQ896448 AB528176 AL834298	-65785	+	TSC_hg19_v1_chr16_+_87425947 AK025556 BC067797 BC018634	-65836	+	TSC_hg19_v1_chr16_+_87425938 AK290956 BC048009 AK310224 AK310335 AF087871 AF183417	-65890	+	AB011151 AB384500 NM_015144 AB030243 BC101478	33591	-	AB593088 TSC_hg19_v1_chr16_+_87636492 NM_020655 BC036533	144702	+	TSC_hg19_v1_chr16_+_87636574 AB042636	144779	+	AF303888|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AM393561|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##DQ893152|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##DQ896448|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AL834298|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK025556|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC067797|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC018634|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK290956|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##BC048009|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310224|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AK310335|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF087871|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AF183417|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##AB011151|ZCCHC14|23174|zinc finger, CCHC domain containing 14##NM_015144|ZCCHC14|23174|zinc finger, CCHC domain containing 14##AB030243|ZCCHC14|23174|zinc finger, CCHC domain containing 14##BC101478|ZCCHC14|23174|zinc finger, CCHC domain containing 14##NM_020655|JPH3|57338|junctophilin 3##BC036533|JPH3|57338|junctophilin 3##AB042636|JPH3|57338|junctophilin 3	0.992506	0.0	denovo_WM_7:-85:0.590	denovo_WM_7:-86:0.229
chr17	57378517	57378606	reg1010323.p2	4.249	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	-80663	+	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	-91164	+	AK225380 TSC_hg19_v1_chr17_+_57233106 AK001891 AK225377 FJ161961 BC008669	-145441	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	30457	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	264426	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	318484	+	NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK225380|PRR11|55771|proline rich 11##AK001891|PRR11|55771|proline rich 11##AK225377|PRR11|55771|proline rich 11##FJ161961|PRR11|55771|proline rich 11##BC008669|PRR11|55771|proline rich 11##NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_004859|CLTC|1213|clathrin, heavy chain (Hc)	0.999936	0.0	denovo_WM_7:-39:0.463	denovo_WM_7:-40:0.519
chr22	20850909	20850975	reg1010808.p2	4.249	+	AK222850 TSC_hg19_v1_chr22_-_20850077 AK290669 AK294682 AK027266 BC015923 NM_032775	-820	-	TSC_hg19_v1_chr22_-_20792108 AB024433 AF522196 NM_153334 NM_182895	-58816	-	AB052951 TSC_hg19_v1_chr22_-_20792077	-58880	-	TSC_hg19_v1_chr22_+_20861871 AK315540	10924	+	TSC_hg19_v1_chr22_+_20861877 AK074268	10934	+	TSC_hg19_v1_chr22_+_20861884 NM_001003891 NM_015889	10942	+	AK222850|KLHL22|84861|kelch-like 22 (Drosophila)##AK290669|KLHL22|84861|kelch-like 22 (Drosophila)##AK294682|KLHL22|84861|kelch-like 22 (Drosophila)##AK027266|KLHL22|84861|kelch-like 22 (Drosophila)##BC015923|KLHL22|84861|kelch-like 22 (Drosophila)##NM_032775|KLHL22|84861|kelch-like 22 (Drosophila)##AB024433|SCARF2|91179|scavenger receptor class F, member 2##AF522196|SCARF2|91179|scavenger receptor class F, member 2##NM_153334|SCARF2|91179|scavenger receptor class F, member 2##NM_182895|SCARF2|91179|scavenger receptor class F, member 2##AB052951|SCARF2|91179|scavenger receptor class F, member 2##AK315540|MED15|51586|mediator complex subunit 15##AK074268|MED15|51586|mediator complex subunit 15##NM_001003891|MED15|51586|mediator complex subunit 15##NM_015889|MED15|51586|mediator complex subunit 15	0.0	0.094842	
chr4	99368437	99368575	reg1012550.p2	4.249	+	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-185912	+	CU691442 BC036870 NM_174952	-304161	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	-2607248	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	211253	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	481754	-	M15353 TSC_hg19_v1_chr4_-_99850288	481785	-	NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E	0.815556	0.0	denovo_WM_7:10:0.762
chr6	131949324	131949496	reg1016642.p2	4.249	+	AB385438 AF135022 AM393572 EU832308 EU832392 EU392526 EU392528 EU392529 EU392530 EU392531 AK315030 AF105332 EU392520 EU392522 EU392527 EU392532 BC060759 TSC_hg19_v1_chr6_-_131949372 AF104255 AL136776 AB033042 BC007088 NM_004830 NM_015979	-123	-	NM_000045 NM_001244438 AY074488 BC005321 TSC_hg19_v1_chr6_+_131894365 M14502 BC020653 CU676606 AB590280 DQ892039 DQ895230 BT006741	-55028	+	NM_004842 NM_138633	-378112	+	AK024899 AK296080 AK310691 AK315893 NM_005021 AK292903 EF560735 AF005632 AB587329 DQ234347	9072	+	BC120953 BC120954 NM_030908	73130	-	NM_001145659	82746	-	AF135022|MED23|9439|mediator complex subunit 23##AM393572|MED23|9439|mediator complex subunit 23##EU832308|MED23|9439|mediator complex subunit 23##EU832392|MED23|9439|mediator complex subunit 23##EU392526|MED23|9439|mediator complex subunit 23##EU392528|MED23|9439|mediator complex subunit 23##EU392529|MED23|9439|mediator complex subunit 23##EU392530|MED23|9439|mediator complex subunit 23##EU392531|MED23|9439|mediator complex subunit 23##AK315030|MED23|9439|mediator complex subunit 23##AF105332|MED23|9439|mediator complex subunit 23##EU392520|MED23|9439|mediator complex subunit 23##EU392522|MED23|9439|mediator complex subunit 23##EU392527|MED23|9439|mediator complex subunit 23##EU392532|MED23|9439|mediator complex subunit 23##BC060759|MED23|9439|mediator complex subunit 23##AF104255|MED23|9439|mediator complex subunit 23##AL136776|MED23|9439|mediator complex subunit 23##AB033042|MED23|9439|mediator complex subunit 23##BC007088|MED23|9439|mediator complex subunit 23##NM_004830|MED23|9439|mediator complex subunit 23##NM_015979|MED23|9439|mediator complex subunit 23##NM_000045|ARG1|383|arginase, liver##NM_001244438|ARG1|383|arginase, liver##AY074488|ARG1|383|arginase, liver##BC005321|ARG1|383|arginase, liver##M14502|ARG1|383|arginase, liver##BC020653|ARG1|383|arginase, liver##DQ892039|ARG1|383|arginase, liver##DQ895230|ARG1|383|arginase, liver##BT006741|ARG1|383|arginase, liver##NM_004842|AKAP7|9465|A kinase (PRKA) anchor protein 7##NM_138633|AKAP7|9465|A kinase (PRKA) anchor protein 7##AK024899|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK296080|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK310691|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK315893|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##NM_005021|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##AK292903|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##EF560735|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##DQ234347|ENPP3|5169|ectonucleotide pyrophosphatase/phosphodiesterase 3##BC120953|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##BC120954|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##NM_030908|OR2A4|79541|olfactory receptor, family 2, subfamily A, member 4##NM_001145659|CTAGE9|643854|CTAGE family, member 9	0.0	0.0	
chr7	6416342	6416408	reg1003323.p4	4.249	+	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	-2148	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	-27865	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-104144	-	TSC_hg19_v1_chr7_-_6474593 AK298910	58215	-	TSC_hg19_v1_chr7_-_6487567 BC027603 AK074584 AK093958 AK122748 AK301087 AK301104 AX748382 AK298955	71164	-	TSC_hg19_v1_chr7_-_6487586 AK075128 AK074744 AF450090 NM_001142936 NM_139179	71233	-	NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK298910|DAGLB|221955|diacylglycerol lipase, beta##BC027603|DAGLB|221955|diacylglycerol lipase, beta##AK074584|DAGLB|221955|diacylglycerol lipase, beta##AK093958|DAGLB|221955|diacylglycerol lipase, beta##AK122748|DAGLB|221955|diacylglycerol lipase, beta##AK301087|DAGLB|221955|diacylglycerol lipase, beta##AK301104|DAGLB|221955|diacylglycerol lipase, beta##AK298955|DAGLB|221955|diacylglycerol lipase, beta##AK075128|DAGLB|221955|diacylglycerol lipase, beta##AK074744|DAGLB|221955|diacylglycerol lipase, beta##AF450090|DAGLB|221955|diacylglycerol lipase, beta##NM_001142936|DAGLB|221955|diacylglycerol lipase, beta##NM_139179|DAGLB|221955|diacylglycerol lipase, beta	2.008945	0.0	denovo_WM_7:-60:0.241	denovo_WM_7:-61:0.241	denovo_WM_7:-62:0.241	denovo_WM_7:-63:0.241
chr7	72251382	72251525	reg1015124.p2	4.249	+	NM_031468	-374094	-	NM_001017440 TSC_hg19_v1_chr7_-_71802376	-449149	-	AK123862 TSC_hg19_v1_chr7_-_71801809	-449675	-	AK303225 AK309556 AK301471 BC068520 AK310913 NM_001145440 NM_001145441	47329	-	TSC_hg19_v1_chr7_+_72300065 BC010183	48646	+	TSC_hg19_v1_chr7_+_72349925 AB014518 NM_172020	98482	+	NM_031468|CALN1|83698|calneuron 1##NM_001017440|CALN1|83698|calneuron 1##AK123862|CALN1|83698|calneuron 1##AK303225|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK309556|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK301471|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##BC068520|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##AK310913|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_001145440|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##NM_001145441|TYW1B|441250|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)##BC010183|SBDSP1|155370|Shwachman-Bodian-Diamond syndrome pseudogene 1##AB014518|POM121|9883|POM121 membrane glycoprotein##NM_172020|POM121|9883|POM121 membrane glycoprotein	0.015038	0.896919	CTCF.p2:39:0.897
chr8	21622526	21622614	reg1007944.p1	4.249	+	AF123652 AF123654 AF123655 AF123656 AF123657 AF123658 EU446940 BC075006 BC075007 AF123659 NM_021020	-1509824	-	TSC_hg19_v1_chr8_+_20054905 X62949 BC003100 AK298819 AB208806 L35249 CU688958 DQ891837 DQ895023 BC007309	-1567648	+	TSC_hg19_v1_chr8_+_20054891 AK294163 BC030640 AK312372	-1567677	+	AY326396 AY941828 U93703 AB529071 CU692022 AF002700 BC033096 TSC_hg19_v1_chr8_-_21645836 AK299623 U97145	23222	-	TSC_hg19_v1_chr8_-_21646372 BC041688 NM_001165038 NM_001165039 NM_001495	23796	-	AB528923 AF034970 CU689448 DQ890550 DQ896808 AK292126 BC032623 AK226110 AK296671 TSC_hg19_v1_chr8_-_21771202 NM_003974	148595	-	AF123652|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123654|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123655|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123656|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123657|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123658|LZTS1|11178|leucine zipper, putative tumor suppressor 1##EU446940|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075006|LZTS1|11178|leucine zipper, putative tumor suppressor 1##BC075007|LZTS1|11178|leucine zipper, putative tumor suppressor 1##AF123659|LZTS1|11178|leucine zipper, putative tumor suppressor 1##NM_021020|LZTS1|11178|leucine zipper, putative tumor suppressor 1##X62949|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC003100|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK298819|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AB208806|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##L35249|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ891837|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##DQ895023|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC007309|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK294163|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##BC030640|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AK312372|ATP6V1B2|526|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2##AY326396|GFRA2|2675|GDNF family receptor alpha 2##AY941828|GFRA2|2675|GDNF family receptor alpha 2##U93703|GFRA2|2675|GDNF family receptor alpha 2##AF002700|GFRA2|2675|GDNF family receptor alpha 2##AK299623|GFRA2|2675|GDNF family receptor alpha 2##U97145|GFRA2|2675|GDNF family receptor alpha 2##BC041688|GFRA2|2675|GDNF family receptor alpha 2##NM_001165038|GFRA2|2675|GDNF family receptor alpha 2##NM_001165039|GFRA2|2675|GDNF family receptor alpha 2##NM_001495|GFRA2|2675|GDNF family receptor alpha 2##AF034970|DOK2|9046|docking protein 2, 56kDa##DQ890550|DOK2|9046|docking protein 2, 56kDa##DQ896808|DOK2|9046|docking protein 2, 56kDa##AK292126|DOK2|9046|docking protein 2, 56kDa##BC032623|DOK2|9046|docking protein 2, 56kDa##AK226110|DOK2|9046|docking protein 2, 56kDa##AK296671|DOK2|9046|docking protein 2, 56kDa##NM_003974|DOK2|9046|docking protein 2, 56kDa	1.693585	0.0	denovo_WM_7:63:0.218	denovo_WM_7:64:0.527
chr10	64985521	64985627	reg1011072.p1	4.248	+	TSC_hg19_v1_chr10_+_64893098 AF267866 AK301656 AK225257 AK225256 AY267839 AY267840 BC011707 AB590768 EU832288 EU832373	-92428	+	TSC_hg19_v1_chr10_+_64893044 NM_030759 AK054957 AL136656	-92543	+	AK312813 NM_001136178	-406648	-	BC126403 BC143722 TSC_hg19_v1_chr10_-_65029004 BX537954 NM_004241 BC108649	43341	-	TSC_hg19_v1_chr10_+_65224979 BC007866 AK314171	239410	+	AK027280 EF068222 NM_032776 TSC_hg19_v1_chr10_-_65225738	240104	-	AF267866|NRBF2|29982|nuclear receptor binding factor 2##AK301656|NRBF2|29982|nuclear receptor binding factor 2##AK225257|NRBF2|29982|nuclear receptor binding factor 2##AK225256|NRBF2|29982|nuclear receptor binding factor 2##AY267839|NRBF2|29982|nuclear receptor binding factor 2##AY267840|NRBF2|29982|nuclear receptor binding factor 2##BC011707|NRBF2|29982|nuclear receptor binding factor 2##EU832288|NRBF2|29982|nuclear receptor binding factor 2##EU832373|NRBF2|29982|nuclear receptor binding factor 2##NM_030759|NRBF2|29982|nuclear receptor binding factor 2##AK054957|NRBF2|29982|nuclear receptor binding factor 2##AL136656|NRBF2|29982|nuclear receptor binding factor 2##AK312813|EGR2|1959|early growth response 2##NM_001136178|EGR2|1959|early growth response 2##BC126403|JMJD1C|221037|jumonji domain containing 1C##BC143722|JMJD1C|221037|jumonji domain containing 1C##BX537954|JMJD1C|221037|jumonji domain containing 1C##NM_004241|JMJD1C|221037|jumonji domain containing 1C##BC108649|JMJD1C|221037|jumonji domain containing 1C##BC007866|LOC84989|84989|uncharacterized LOC84989##AK314171|LOC84989|84989|uncharacterized LOC84989##AK027280|JMJD1C|221037|jumonji domain containing 1C##EF068222|JMJD1C|221037|jumonji domain containing 1C##NM_032776|JMJD1C|221037|jumonji domain containing 1C	0.997523	0.0	denovo_WM_7:-25:0.841
chr12	56309388	56309488	reg1004205.p2	4.248	+	CU690648 U38431 U38321 U37791 Y08622 BC050368 X92521 TSC_hg19_v1_chr12_-_56236719 AK303202 AK297999 BC030206 NM_002429 AK225939	-72753	-	TSC_hg19_v1_chr12_+_56224684 BC072431 BX648969 AK057179	-84769	+	TSC_hg19_v1_chr12_-_56224312 AK291222	-85115	-	AK096922 NM_001143853	11463	-	AJ459406 TSC_hg19_v1_chr12_-_56321568	12118	-	BC009627 BC014976 TSC_hg19_v1_chr12_-_56321675	12232	-	U38431|MMP19|4327|matrix metallopeptidase 19##U38321|MMP19|4327|matrix metallopeptidase 19##U37791|MMP19|4327|matrix metallopeptidase 19##Y08622|MMP19|4327|matrix metallopeptidase 19##BC050368|MMP19|4327|matrix metallopeptidase 19##X92521|MMP19|4327|matrix metallopeptidase 19##AK303202|MMP19|4327|matrix metallopeptidase 19##AK297999|MMP19|4327|matrix metallopeptidase 19##BC030206|MMP19|4327|matrix metallopeptidase 19##NM_002429|MMP19|4327|matrix metallopeptidase 19##AK225939|MMP19|4327|matrix metallopeptidase 19##BC072431|TMEM198B|440104|transmembrane protein 198B, pseudogene##BX648969|TMEM198B|440104|transmembrane protein 198B, pseudogene##AK057179|TMEM198B|440104|transmembrane protein 198B, pseudogene##AK291222|DNAJC14|85406|DnaJ (Hsp40) homolog, subfamily C, member 14##AK096922|WIBG|84305|within bgcn homolog (Drosophila)##NM_001143853|WIBG|84305|within bgcn homolog (Drosophila)##AJ459406|WIBG|84305|within bgcn homolog (Drosophila)##BC009627|WIBG|84305|within bgcn homolog (Drosophila)##BC014976|WIBG|84305|within bgcn homolog (Drosophila)	0.999762	0.0	denovo_WM_7:-84:0.298	denovo_WM_7:-85:0.298	denovo_WM_7:-86:0.298
chr15	52951310	52951437	reg1010457.p2	4.248	+	TSC_hg19_v1_chr15_-_52861344 BC100015 AL833077	-89996	-	TSC_hg19_v1_chr15_-_52861228 AF084555 BC003418 NM_006628	-90141	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	-90314	-	AB037791 AK292917 NM_019600 BC040548 TSC_hg19_v1_chr15_-_52970945 AK308049	19508	-	AB463985 BC140830 NM_004498 U96173 TSC_hg19_v1_chr15_-_53082301	130821	-	AK096055 BX537884 NM_182758	1100474	-	BC100015|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AL833077|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AF084555|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC003418|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##NM_006628|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AB037791|FAM214A|56204|family with sequence similarity 214, member A##AK292917|FAM214A|56204|family with sequence similarity 214, member A##NM_019600|FAM214A|56204|family with sequence similarity 214, member A##BC040548|FAM214A|56204|family with sequence similarity 214, member A##AK308049|FAM214A|56204|family with sequence similarity 214, member A##BC140830|ONECUT1|3175|one cut homeobox 1##NM_004498|ONECUT1|3175|one cut homeobox 1##U96173|ONECUT1|3175|one cut homeobox 1##AK096055|WDR72|256764|WD repeat domain 72##BX537884|WDR72|256764|WD repeat domain 72##NM_182758|WDR72|256764|WD repeat domain 72	0.329543	0.0	
chr22	50682973	50683090	reg1014937.p1	4.248	+	TSC_hg19_v1_chr22_-_50682948 BC144488 BC144489 BC150613 AF272887	-59	-	AB051456 TSC_hg19_v1_chr22_-_50682891	-185	-	CR456464 BC001099 CU013014 CU013302 TSC_hg19_v1_chr22_+_50640050	-43061	+	TSC_hg19_v1_chr22_-_50683439 BC151209 NM_020461 AL832617 AK310419	399	-	AF393962 AF407272 AF407273 AY450395 CU013015 CU013303 AB463069 BC125082 BC125083 CR456465 TSC_hg19_v1_chr22_-_50689653 BC032049	6532	-	TSC_hg19_v1_chr22_-_50689695 BC094734	6662	-	BC144488|TUBGCP6|85378|tubulin, gamma complex associated protein 6##BC144489|TUBGCP6|85378|tubulin, gamma complex associated protein 6##BC150613|TUBGCP6|85378|tubulin, gamma complex associated protein 6##AF272887|TUBGCP6|85378|tubulin, gamma complex associated protein 6##AB051456|TUBGCP6|85378|tubulin, gamma complex associated protein 6##CR456464|SELO|83642|selenoprotein O##BC001099|SELO|83642|selenoprotein O##BC151209|TUBGCP6|85378|tubulin, gamma complex associated protein 6##NM_020461|TUBGCP6|85378|tubulin, gamma complex associated protein 6##AL832617|TUBGCP6|85378|tubulin, gamma complex associated protein 6##AK310419|TUBGCP6|85378|tubulin, gamma complex associated protein 6##AF393962|HDAC10|83933|histone deacetylase 10##AF407272|HDAC10|83933|histone deacetylase 10##AF407273|HDAC10|83933|histone deacetylase 10##AY450395|HDAC10|83933|histone deacetylase 10##CU013015|HDAC10|83933|histone deacetylase 10##CU013303|HDAC10|83933|histone deacetylase 10##BC125082|HDAC10|83933|histone deacetylase 10##BC125083|HDAC10|83933|histone deacetylase 10##CR456465|HDAC10|83933|histone deacetylase 10##BC032049|HDAC10|83933|histone deacetylase 10##BC094734|HDAC10|83933|histone deacetylase 10	0.0	0.0	
chr2	44935568	44935723	reg1007730.p2	4.248	+	NM_024766 TSC_hg19_v1_chr2_+_44589085 BC029359 AK027104 BC053733	-346553	+	AK131463 NM_001171603 NM_001171617	-346674	-	AB007896 TSC_hg19_v1_chr2_-_44588634 BC151236 AK025649 NM_001171606 NM_001171613	-346965	-	AJ012611 NM_005413 AL162671	233401	+	BC024033 TSC_hg19_v1_chr2_-_45236562 AF332197 NM_016932	300905	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	859483	-	NM_024766|CAMKMT|79823|calmodulin-lysine N-methyltransferase##BC029359|CAMKMT|79823|calmodulin-lysine N-methyltransferase##AK027104|CAMKMT|79823|calmodulin-lysine N-methyltransferase##BC053733|CAMKMT|79823|calmodulin-lysine N-methyltransferase##AK131463|PREPL|9581|prolyl endopeptidase-like##NM_001171603|PREPL|9581|prolyl endopeptidase-like##NM_001171617|PREPL|9581|prolyl endopeptidase-like##AB007896|PREPL|9581|prolyl endopeptidase-like##BC151236|PREPL|9581|prolyl endopeptidase-like##AK025649|PREPL|9581|prolyl endopeptidase-like##NM_001171606|PREPL|9581|prolyl endopeptidase-like##NM_001171613|PREPL|9581|prolyl endopeptidase-like##AJ012611|SIX3|6496|SIX homeobox 3##NM_005413|SIX3|6496|SIX homeobox 3##AL162671|SIX3|6496|SIX homeobox 3##BC024033|SIX2|10736|SIX homeobox 2##AF332197|SIX2|10736|SIX homeobox 2##NM_016932|SIX2|10736|SIX homeobox 2##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1	0.0	0.0	
chr4	130871467	130871585	reg1013349.p1	4.248	+	NM_001099783	-854245	+	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	-856659	+	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	-856936	-	TSC_hg19_v1_chr4_+_134070448 AB037821 AY013874 NM_020815 NM_032961	3198930	+	AK024636 TSC_hg19_v1_chr4_+_134073255 AL157470	3201757	+	NM_001114734 TSC_hg19_v1_chr4_-_135122935	4251392	-	NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##AB037821|PCDH10|57575|protocadherin 10##AY013874|PCDH10|57575|protocadherin 10##NM_020815|PCDH10|57575|protocadherin 10##NM_032961|PCDH10|57575|protocadherin 10##AK024636|PCDH10|57575|protocadherin 10##AL157470|PCDH10|57575|protocadherin 10##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like	0.629293	0.0	denovo_WM_7:-28:0.314
chr7	69329961	69330093	reg1009312.p1	4.248	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-265439	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-265698	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-266191	+	TSC_hg19_v1_chr7_+_70231164 AK296981	901178	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1267761	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2471751	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.994137	0.0	denovo_WM_7:70:0.459	denovo_WM_7:71:0.459
chr7	7813225	7813350	reg1004056.p4	4.248	+	BC009868 NM_002947	-55050	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-132914	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-133200	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	195146	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	488429	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	488504	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.372986	0.0	
chr12	25154616	25154688	reg1018218.p2	4.247	+	BC035880 NM_001101339 BC046192 BC062789	-4240	-	TSC_hg19_v1_chr12_-_25102303 AK056255 NM_001178091 NM_001178092 NM_005504	-52316	-	TSC_hg19_v1_chr12_-_25102021 BX647122 AK128527	-52632	-	NM_001204126 NM_001204127 NM_006152	50528	+	TSC_hg19_v1_chr12_+_25205520 BC029391 AK303103 AK303256 BC126417 BC144164 BC144165 BC144170	50928	+	BC028415 AK297998 AK302235 AK301763 AK093102 AX747924 BC031047 BC047415 BC057795 NM_001082972 NM_001082973 NM_001204101 NM_001204102 NM_018272 AK304602	193411	-	BC035880|C12orf77|196415|chromosome 12 open reading frame 77##NM_001101339|C12orf77|196415|chromosome 12 open reading frame 77##BC046192|C12orf77|196415|chromosome 12 open reading frame 77##BC062789|C12orf77|196415|chromosome 12 open reading frame 77##AK056255|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178091|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178092|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_005504|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BX647122|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##AK128527|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001204126|LRMP|4033|lymphoid-restricted membrane protein##NM_001204127|LRMP|4033|lymphoid-restricted membrane protein##NM_006152|LRMP|4033|lymphoid-restricted membrane protein##BC029391|LRMP|4033|lymphoid-restricted membrane protein##AK303103|LRMP|4033|lymphoid-restricted membrane protein##AK303256|LRMP|4033|lymphoid-restricted membrane protein##BC126417|LRMP|4033|lymphoid-restricted membrane protein##BC144164|LRMP|4033|lymphoid-restricted membrane protein##BC144165|LRMP|4033|lymphoid-restricted membrane protein##BC144170|LRMP|4033|lymphoid-restricted membrane protein##BC028415|CASC1|55259|cancer susceptibility candidate 1##AK297998|CASC1|55259|cancer susceptibility candidate 1##AK302235|CASC1|55259|cancer susceptibility candidate 1##AK301763|CASC1|55259|cancer susceptibility candidate 1##AK093102|CASC1|55259|cancer susceptibility candidate 1##BC031047|CASC1|55259|cancer susceptibility candidate 1##BC047415|CASC1|55259|cancer susceptibility candidate 1##BC057795|CASC1|55259|cancer susceptibility candidate 1##NM_001082972|CASC1|55259|cancer susceptibility candidate 1##NM_001082973|CASC1|55259|cancer susceptibility candidate 1##NM_001204101|CASC1|55259|cancer susceptibility candidate 1##NM_001204102|CASC1|55259|cancer susceptibility candidate 1##NM_018272|CASC1|55259|cancer susceptibility candidate 1##AK304602|CASC1|55259|cancer susceptibility candidate 1	0.994803	0.0	denovo_WM_7:60:0.332	denovo_WM_7:61:0.332	denovo_WM_7:62:0.332
chr12	787405	787475	reg1006720.p2	4.247	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-14725	-	TSC_hg19_v1_chr12_-_752800 AK298043	-34621	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-35262	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	74716	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	75316	+	BC013629 TSC_hg19_v1_chr12_+_1017145	229642	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.859301	0.0	denovo_WM_7:99:0.203
chr19	6862850	6863030	reg1016132.p2	4.247	+	TSC_hg19_v1_chr19_+_6772811 AB590871	-90132	+	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	-90216	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-95433	-	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	24657	+	NM_001136507	167653	+	NM_001164419	177243	-	NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001136507|MBD3L5|284428|methyl-CpG binding domain protein 3-like 5##NM_001164419|MBD3L4|653656|methyl-CpG binding domain protein 3-like 4	0.0	0.080766	
chr20	11294996	11295141	reg1010895.p1	4.247	+	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	-640499	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	-640864	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-879092	+	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	576381	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	603489	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	1694573	+	BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3	0.994112	0.0	denovo_WM_7:9:0.981
chr22	32184189	32184258	reg1010992.p1	4.247	+	NM_001136029 AB014545 BC146766 AJ698950 AJ698951 AJ704764 AB383936 CU691240	-33346	+	TSC_hg19_v1_chr22_+_32150004 NM_001007188 NM_001242896 NM_014662 AK300737 BC057797 BC136612 BC144291	-34175	+	TSC_hg19_v1_chr22_+_32149962 AK294987	-34260	+	TSC_hg19_v1_chr22_+_32340520 NM_003405 X78138 BC003047 S80794	156265	+	TSC_hg19_v1_chr22_+_32340608 AK312650 CR456612 AB385077 L20422 CU013208 CU013496	156432	+	AJ704765 AJ704766 AL050256 NM_015372 AK315264	157098	-	NM_001136029|DEPDC5|9681|DEP domain containing 5##AB014545|DEPDC5|9681|DEP domain containing 5##BC146766|DEPDC5|9681|DEP domain containing 5##AJ698950|DEPDC5|9681|DEP domain containing 5##AJ698951|DEPDC5|9681|DEP domain containing 5##AJ704764|DEPDC5|9681|DEP domain containing 5##NM_001007188|DEPDC5|9681|DEP domain containing 5##NM_001242896|DEPDC5|9681|DEP domain containing 5##NM_014662|DEPDC5|9681|DEP domain containing 5##AK300737|DEPDC5|9681|DEP domain containing 5##BC057797|DEPDC5|9681|DEP domain containing 5##BC136612|DEPDC5|9681|DEP domain containing 5##BC144291|DEPDC5|9681|DEP domain containing 5##AK294987|DEPDC5|9681|DEP domain containing 5##NM_003405|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##X78138|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##BC003047|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##S80794|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AK312650|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CR456612|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##L20422|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013208|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013496|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AJ704765|C22orf24|25775|chromosome 22 open reading frame 24##AJ704766|C22orf24|25775|chromosome 22 open reading frame 24##AL050256|C22orf24|25775|chromosome 22 open reading frame 24##NM_015372|C22orf24|25775|chromosome 22 open reading frame 24##AK315264|C22orf24|25775|chromosome 22 open reading frame 24	1.659553	0.0	denovo_WM_7:31:0.542	denovo_WM_7:46:0.313	denovo_WM_7:47:0.358
chr4	78880846	78880951	reg1014841.p1	4.247	+	NM_020236 AF212225 TSC_hg19_v1_chr4_+_78783990 BC014356 BC017765 AK315600 BC015109 BC032595	-96984	+	TSC_hg19_v1_chr4_-_78740523 AK304397 AK058188 AK303417 NM_144571	-140354	-	AF044197 NM_006419	-447993	+	NM_001166133 NM_025074 TSC_hg19_v1_chr4_+_78978757 AK096838	97842	+	BC006366 TSC_hg19_v1_chr4_-_79103287	222387	-	NM_005139 TSC_hg19_v1_chr4_+_79472790	591872	+	NM_020236|MRPL1|65008|mitochondrial ribosomal protein L1##AF212225|MRPL1|65008|mitochondrial ribosomal protein L1##BC014356|MRPL1|65008|mitochondrial ribosomal protein L1##BC017765|MRPL1|65008|mitochondrial ribosomal protein L1##AK315600|MRPL1|65008|mitochondrial ribosomal protein L1##BC015109|MRPL1|65008|mitochondrial ribosomal protein L1##BC032595|MRPL1|65008|mitochondrial ribosomal protein L1##AK304397|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK058188|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK303417|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_144571|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AF044197|CXCL13|10563|chemokine (C-X-C motif) ligand 13##NM_006419|CXCL13|10563|chemokine (C-X-C motif) ligand 13##NM_001166133|FRAS1|80144|Fraser syndrome 1##NM_025074|FRAS1|80144|Fraser syndrome 1##AK096838|FRAS1|80144|Fraser syndrome 1##NM_005139|ANXA3|306|annexin A3	0.0	0.914188	CTCF.p2:7:0.914
chr6	12320475	12320576	reg1011445.p1	4.247	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	-29932	+	NM_002114	-307802	+	NM_001143948 NM_032744	-541246	-	TSC_hg19_v1_chr6_+_12514301 D28417	193777	+	AK295263 TSC_hg19_v1_chr6_+_12716998	396418	+	AK290017 NM_001242648 NM_030948 TSC_hg19_v1_chr6_+_12717049	396518	+	NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##AK295263|PHACTR1|221692|phosphatase and actin regulator 1##AK290017|PHACTR1|221692|phosphatase and actin regulator 1##NM_001242648|PHACTR1|221692|phosphatase and actin regulator 1##NM_030948|PHACTR1|221692|phosphatase and actin regulator 1	0.998191	0.0	denovo_WM_7:23:0.827
chr6	76415463	76415615	reg1012085.p1	4.247	+	AF307849 AB018340 TSC_hg19_v1_chr6_+_76312226 AF306508 AF196304	-103331	+	TSC_hg19_v1_chr6_+_76311780 BC028583	-103657	+	TSC_hg19_v1_chr6_+_76311642 AK096455	-103903	+	TSC_hg19_v1_chr6_+_76458926 NM_004999 BX647397 BC012598	43377	+	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	43470	+	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	366760	-	AF307849|SENP6|26054|SUMO1/sentrin specific peptidase 6##AB018340|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF306508|SENP6|26054|SUMO1/sentrin specific peptidase 6##AF196304|SENP6|26054|SUMO1/sentrin specific peptidase 6##BC028583|SENP6|26054|SUMO1/sentrin specific peptidase 6##AK096455|SENP6|26054|SUMO1/sentrin specific peptidase 6##NM_004999|MYO6|4646|myosin VI##BX647397|MYO6|4646|myosin VI##BC012598|MYO6|4646|myosin VI##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1	0.958581	0.0	denovo_WM_7:-79:0.474	denovo_WM_7:-82:0.485
chr10	119302113	119302293	reg1010498.p1	4.246	+	AF301598 NM_001165924 NM_004098	-248	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-287	-	CU688476 TSC_hg19_v1_chr10_-_119134939 BC012186 BC028375 NM_173791 AK091746 AX747159 BC033019	-167322	-	TSC_hg19_v1_chr10_+_119302713 AB463605	540	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	503841	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	504227	+	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC012186|PDZD8|118987|PDZ domain containing 8##BC028375|PDZD8|118987|PDZ domain containing 8##NM_173791|PDZD8|118987|PDZ domain containing 8##AK091746|PDZD8|118987|PDZ domain containing 8##BC033019|PDZD8|118987|PDZ domain containing 8##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)	0.0	0.0	
chr15	77475072	77475173	reg1011193.p1	4.246	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-2394	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-111578	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-111639	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	237421	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	237909	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	238140	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	0.998462	0.0	
chr16	28192325	28192504	reg1012372.p1	4.246	+	TSC_hg19_v1_chr16_-_28074776 AY358206 NM_001109763	-117612	-	BC016460 NM_144675	-292937	-	TSC_hg19_v1_chr16_+_27561464 NM_015202 AB011128 BC150276 BC131508	-630950	+	AY026388 BC130304 BC144189 TSC_hg19_v1_chr16_-_28222816 AK123846	30371	-	TSC_hg19_v1_chr16_-_28223181 AB002368 NM_015171	30761	-	TSC_hg19_v1_chr16_-_28303389 AK091456 AX746995	110964	-	AY358206|GSG1L|146395|GSG1-like##NM_001109763|GSG1L|146395|GSG1-like##BC016460|GSG1L|146395|GSG1-like##NM_144675|GSG1L|146395|GSG1-like##NM_015202|KIAA0556|23247|KIAA0556##AB011128|KIAA0556|23247|KIAA0556##BC150276|KIAA0556|23247|KIAA0556##BC131508|KIAA0556|23247|KIAA0556##AY026388|XPO6|23214|exportin 6##BC130304|XPO6|23214|exportin 6##BC144189|XPO6|23214|exportin 6##AK123846|XPO6|23214|exportin 6##AB002368|XPO6|23214|exportin 6##NM_015171|XPO6|23214|exportin 6	0.044159	0.0	
chr19	11685507	11685683	reg1006284.p1	4.246	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-15562	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-35936	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-45638	-	X14618 TSC_hg19_v1_chr19_-_11688461	2856	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	2895	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	2935	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	0.0	0.0	
chr3	126118237	126118384	reg1013533.p1	4.246	+	AK097402 NM_182628 TSC_hg19_v1_chr3_+_126113866	-4487	+	TSC_hg19_v1_chr3_-_126076252 NM_014079 BC036733	-42095	-	AF052732 BC027241 AK222535 AK222694 TSC_hg19_v1_chr3_-_125899430 AK294392 AK294530 AB209299 NM_012190	-218867	-	TSC_hg19_v1_chr3_-_126194735 AY936556	76415	-	DQ079590 NM_001040653 NM_025112 TSC_hg19_v1_chr3_-_126194793	76479	-	AK055862 BC115405 BC115406 TSC_hg19_v1_chr3_-_126236597 AB075869 NM_001165974 NM_144639	118295	-	AK097402|CCDC37|348807|coiled-coil domain containing 37##NM_182628|CCDC37|348807|coiled-coil domain containing 37##NM_014079|KLF15|28999|Kruppel-like factor 15##BC036733|KLF15|28999|Kruppel-like factor 15##AF052732|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##BC027241|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##AK222535|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##AK222694|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##AK294392|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##AK294530|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##AB209299|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##NM_012190|ALDH1L1|10840|aldehyde dehydrogenase 1 family, member L1##AY936556|ZXDC|79364|ZXD family zinc finger C##DQ079590|ZXDC|79364|ZXD family zinc finger C##NM_001040653|ZXDC|79364|ZXD family zinc finger C##NM_025112|ZXDC|79364|ZXD family zinc finger C##AK055862|UROC1|131669|urocanase domain containing 1##BC115405|UROC1|131669|urocanase domain containing 1##BC115406|UROC1|131669|urocanase domain containing 1##AB075869|UROC1|131669|urocanase domain containing 1##NM_001165974|UROC1|131669|urocanase domain containing 1##NM_144639|UROC1|131669|urocanase domain containing 1	0.948678	0.0	denovo_WM_7:-52:0.261	denovo_WM_7:-53:0.345
chr5	126098595	126098710	reg1002533.p2	4.246	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-131237	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-162020	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-167796	-	NM_005573 BC052951	13663	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	14179	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	14230	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	1.367392	0.014136	denovo_WM_7:1:0.781	denovo_WM_7:-18:0.328
chr7	101108922	101108988	reg1012382.p2	4.246	+	NM_133457 TSC_hg19_v1_chr7_+_101006130 BC085006 BC110393 AJ416091 BC109254	-102738	+	TSC_hg19_v1_chr7_-_100965079 CU678746 CU679505 BC050531 AK024179 AK298888 AK023287 AK292254 BC004522 AK308684 BC038668 BC009823 AK294653 NM_001130820 NM_001130821 NM_001130822 NM_022777	-143917	-	TSC_hg19_v1_chr7_-_100895576 AK311665 AK310968 AK091729	-213389	-	BC002778 NM_138403	163620	-	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	350254	+	M74099 NM_181552	351926	+	NM_133457|EMID2|136227|EMI domain containing 2##BC110393|EMID2|136227|EMI domain containing 2##AJ416091|EMID2|136227|EMI domain containing 2##BC109254|EMID2|136227|EMI domain containing 2##BC050531|RABL5|64792|RAB, member RAS oncogene family-like 5##AK024179|RABL5|64792|RAB, member RAS oncogene family-like 5##AK298888|RABL5|64792|RAB, member RAS oncogene family-like 5##AK023287|RABL5|64792|RAB, member RAS oncogene family-like 5##AK292254|RABL5|64792|RAB, member RAS oncogene family-like 5##BC004522|RABL5|64792|RAB, member RAS oncogene family-like 5##BC038668|RABL5|64792|RAB, member RAS oncogene family-like 5##BC009823|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130820|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130821|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_001130822|RABL5|64792|RAB, member RAS oncogene family-like 5##NM_022777|RABL5|64792|RAB, member RAS oncogene family-like 5##AK311665|FIS1|51024|fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)##AK310968|FIS1|51024|fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1	0.986408	0.0	
chr18	72922632	72922810	reg1012203.p1	4.245	+	BC018081 NM_175907 TSC_hg19_v1_chr18_-_72921324	-1416	-	TSC_hg19_v1_chr18_-_72921059 AK292880 BC078661 BC033780	-1609	-	TSC_hg19_v1_chr18_-_72920993 CU687330 CU689738	-1720	-	TSC_hg19_v1_chr18_+_72922751 NM_005786 AK091155 AX746813	24	+	TSC_hg19_v1_chr18_+_72998258 AK223545 BC024152	75621	+	BC105945 BC107486 NM_001037331 BC037871 AK093452 AX748136	216901	-	BC018081|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##NM_175907|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##AK292880|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC078661|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC033780|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##NM_005786|TSHZ1|10194|teashirt zinc finger homeobox 1##AK223545|TSHZ1|10194|teashirt zinc finger homeobox 1##BC024152|TSHZ1|10194|teashirt zinc finger homeobox 1##BC105945|C18orf62|284274|chromosome 18 open reading frame 62##BC107486|C18orf62|284274|chromosome 18 open reading frame 62##NM_001037331|C18orf62|284274|chromosome 18 open reading frame 62##BC037871|C18orf62|284274|chromosome 18 open reading frame 62##AK093452|C18orf62|284274|chromosome 18 open reading frame 62	0.902291	0.0	denovo_WM_7:-101:0.862
chr9	132807762	132807850	reg1011165.p1	4.245	+	TSC_hg19_v1_chr9_-_132805496 NM_015033	-2318	-	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	-2452	-	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-210041	+	BC039728 NM_001136557 NM_001136558 NM_020960	8178	+	TSC_hg19_v1_chr9_+_132816196 BC143655	8385	+	TSC_hg19_v1_chr9_+_132816199 AK026244 AK225456 BC030147 AF376725 AX776003 BC110518 AK293092 AB385490 AB046844	8410	+	NM_015033|FNBP1|23048|formin binding protein 1##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107##BC143655|GPR107|57720|G protein-coupled receptor 107##AK026244|GPR107|57720|G protein-coupled receptor 107##AK225456|GPR107|57720|G protein-coupled receptor 107##BC030147|GPR107|57720|G protein-coupled receptor 107##AF376725|GPR107|57720|G protein-coupled receptor 107##BC110518|GPR107|57720|G protein-coupled receptor 107##AK293092|GPR107|57720|G protein-coupled receptor 107##AB046844|GPR107|57720|G protein-coupled receptor 107	0.011024	0.0	
chr10	3090419	3090599	reg1013760.p1	4.244	+	AF034837 NM_018702	-1310840	-	TSC_hg19_v1_chr10_+_1102822 AK292591	-1987683	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-1987740	+	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	19238	+	AK092597 AX747622 NM_001242339	20309	+	BC021698 TSC_hg19_v1_chr10_+_3151628	61103	+	AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet##BC021698|PFKP|5214|phosphofructokinase, platelet	0.999591	0.0	denovo_WM_7:37:0.828
chr11	71566957	71567081	reg1012308.p2	4.244	+	AF529416 NM_001002035	-22774	+	BC073927 TSC_hg19_v1_chr11_-_71524901 BC054093	-42113	-	TSC_hg19_v1_chr11_+_71498567 NM_001099653 NM_018172 NM_152563 AK130709 AK311675 AK311518 BC032519 AK001523 AK293221 AK311428 AK315454	-68412	+	NM_001242853	22479	+	NM_018320	72748	+	TSC_hg19_v1_chr11_+_71640092 AL833638 AK023139 AK094508 CR457298 BC009672 BC093084 BC117273	73092	+	AF529416|DEFB108B|245911|defensin, beta 108B##NM_001002035|DEFB108B|245911|defensin, beta 108B##BC073927|LOC285407|285407|asparagine-linked glycosylation 1 homolog pseudogene##NM_001099653|FAM86C1|55199|family with sequence similarity 86, member C1##NM_018172|FAM86C1|55199|family with sequence similarity 86, member C1##NM_152563|FAM86C1|55199|family with sequence similarity 86, member C1##AK130709|FAM86C1|55199|family with sequence similarity 86, member C1##AK311675|FAM86C1|55199|family with sequence similarity 86, member C1##AK311518|FAM86C1|55199|family with sequence similarity 86, member C1##BC032519|FAM86C1|55199|family with sequence similarity 86, member C1##AK001523|FAM86C1|55199|family with sequence similarity 86, member C1##AK293221|FAM86C1|55199|family with sequence similarity 86, member C1##AK311428|FAM86C1|55199|family with sequence similarity 86, member C1##AK315454|FAM86C1|55199|family with sequence similarity 86, member C1##NM_001242853|LOC100129216|100129216|beta-defensin 131-like##NM_018320|RNF121|55298|ring finger protein 121##AL833638|RNF121|55298|ring finger protein 121##AK023139|RNF121|55298|ring finger protein 121##AK094508|RNF121|55298|ring finger protein 121##CR457298|RNF121|55298|ring finger protein 121##BC009672|RNF121|55298|ring finger protein 121##BC093084|RNF121|55298|ring finger protein 121##BC117273|RNF121|55298|ring finger protein 121	1.989356	0.0	denovo_WM_7:-68:0.220	denovo_WM_7:-90:0.221
chr13	103092739	103092893	reg1010140.p1	4.244	+	AB590819 BC100920 BC100921 BC100922 AY188178 NM_175929	-38741	-	NM_004115 U66200	-523822	-	TSC_hg19_v1_chr13_+_102104985 AF072752 NM_004791 AK095875 AB008375 AK297744 BC036788 AK291340 AK308194	-987821	+	NM_003291 TSC_hg19_v1_chr13_+_103249354 BC039905 M73047 AK304313 BC024905 CU691800	156520	+	HQ258371 NM_001010977 BC132748 BC132750	254042	-	NM_001146197	318605	-	BC100920|FGF14|2259|fibroblast growth factor 14##BC100921|FGF14|2259|fibroblast growth factor 14##BC100922|FGF14|2259|fibroblast growth factor 14##AY188178|FGF14|2259|fibroblast growth factor 14##NM_175929|FGF14|2259|fibroblast growth factor 14##NM_004115|FGF14|2259|fibroblast growth factor 14##U66200|FGF14|2259|fibroblast growth factor 14##AF072752|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_004791|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK095875|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AB008375|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK297744|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##BC036788|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK291340|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##AK308194|ITGBL1|9358|integrin, beta-like 1 (with EGF-like repeat domains)##NM_003291|TPP2|7174|tripeptidyl peptidase II##BC039905|TPP2|7174|tripeptidyl peptidase II##M73047|TPP2|7174|tripeptidyl peptidase II##AK304313|TPP2|7174|tripeptidyl peptidase II##BC024905|TPP2|7174|tripeptidyl peptidase II##HQ258371|METTL21C|196541|methyltransferase like 21C##NM_001010977|METTL21C|196541|methyltransferase like 21C##BC132748|METTL21C|196541|methyltransferase like 21C##BC132750|METTL21C|196541|methyltransferase like 21C##NM_001146197|CCDC168|643677|coiled-coil domain containing 168	0.0	0.0	
chr16	60269183	60269328	reg1015582.p2	4.244	+	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-1501058	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-1550599	-	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	-1605510	-	AK124734 NM_001796	1801483	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	4886647	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	4886713	-	DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	1.46242	0.0	denovo_WM_7:-37:0.424	denovo_WM_7:-38:0.424	denovo_WM_7:-103:0.266
chr2	120771569	120771680	reg1014795.p2	4.244	+	TSC_hg19_v1_chr2_+_120770652 AK023019 BC054508 AK290895 BC032822 NM_001184938	-891	+	TSC_hg19_v1_chr2_+_120770604 NM_001184937 NM_001184939 NM_020909	-1021	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	-254224	+	TSC_hg19_v1_chr2_-_120980957 BC016849 AK289880 BC080607 AK024632	209313	-	TSC_hg19_v1_chr2_-_120980977 AF530474 NM_024121	209374	-	NM_002881 TSC_hg19_v1_chr2_+_121010418	238796	+	AK023019|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC054508|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK290895|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC032822|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184938|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184937|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184939|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_020909|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC016849|TMEM185B|79134|transmembrane protein 185B##BC080607|TMEM185B|79134|transmembrane protein 185B##AK024632|TMEM185B|79134|transmembrane protein 185B##AF530474|TMEM185B|79134|transmembrane protein 185B##NM_024121|TMEM185B|79134|transmembrane protein 185B##NM_002881|RALB|5899|v-ral simian leukemia viral oncogene homolog B (ras related; GTP binding protein)	0.0	0.0	
chr5	106700122	106700252	reg1008387.p1	4.244	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3801706	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4105730	+	BC024591 NM_015216 AB463068	-4234913	+	AK308672 NM_001962 U26403	306403	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1016943	-	BC063316 NM_001163315	1017611	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	2.929936	0.0	denovo_WM_7:53:0.699	denovo_WM_7:54:0.216	denovo_WM_7:69:0.870
chr5	149863106	149863197	reg1012688.p2	4.244	+	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	-33860	-	TSC_hg19_v1_chr5_-_149829249 BC020515	-33907	-	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	-70701	-	TSC_hg19_v1_chr5_+_149865341 AB209107	2288	+	AK292448 NM_001543 U36600	24562	+	TSC_hg19_v1_chr5_+_149980641 AL831818 NM_001166208	117491	+	BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##BC020515|RPS14|6208|ribosomal protein S14##NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AK292448|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##NM_001543|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##U36600|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AL831818|SYNPO|11346|synaptopodin##NM_001166208|SYNPO|11346|synaptopodin	0.994332	0.0	
chr5	75647623	75647803	reg1015306.p2	4.244	+	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	-268442	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-634453	-	BC101325 AK093098 AX747921 BC101326 BC101327 BC101328 NM_152408	-639451	-	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	51403	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	271432	-	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	364243	+	AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101325|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK093098|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101326|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101327|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC101328|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_152408|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor	0.0	0.0	
chr7	94790443	94790623	reg1014089.p1	4.244	+	NM_001166161 NM_001166162 NM_001166163	-251324	+	TSC_hg19_v1_chr7_+_94536986 NM_001166160 NM_017650 AK096514 BC150636	-253567	+	TSC_hg19_v1_chr7_+_94297448 AF038197	-493081	+	M63013 AB528644 M63012 S64615 TSC_hg19_v1_chr7_-_94953802 AK314027 BC074719	163241	-	TSC_hg19_v1_chr7_-_94953845 D84371 U53784 Z70723 NM_000446	163322	-	L48516 AF320003 AF329433 CU687094 TSC_hg19_v1_chr7_-_95025687 AK301772 BC070374 AK304282 NM_000940	235123	-	NM_001166161|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_001166162|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_001166163|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_001166160|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_017650|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##AK096514|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##BC150636|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##AF038197|PEG10|23089|paternally expressed 10##M63013|PON1|5444|paraoxonase 1##M63012|PON1|5444|paraoxonase 1##S64615|PON1|5444|paraoxonase 1##AK314027|PON1|5444|paraoxonase 1##BC074719|PON1|5444|paraoxonase 1##D84371|PON1|5444|paraoxonase 1##U53784|PON1|5444|paraoxonase 1##Z70723|PON1|5444|paraoxonase 1##NM_000446|PON1|5444|paraoxonase 1##L48516|PON3|5446|paraoxonase 3##AF320003|PON3|5446|paraoxonase 3##AF329433|PON3|5446|paraoxonase 3##BC070374|PON3|5446|paraoxonase 3##AK304282|PON3|5446|paraoxonase 3##NM_000940|PON3|5446|paraoxonase 3	0.975028	0.0	denovo_WM_7:-30:0.557	denovo_WM_7:-32:0.348
chr8	101938321	101938482	reg1010742.p2	4.244	+	TSC_hg19_v1_chr8_-_101936525 DQ185048	-1877	-	BC041863 TSC_hg19_v1_chr8_-_101734972	-203435	-	Y00345 TSC_hg19_v1_chr8_-_101734316 AK130523 AK303120 NM_002568	-204084	-	TSC_hg19_v1_chr8_-_101962797 NM_001135702	24398	-	TSC_hg19_v1_chr8_-_101963538 NM_001135700 NM_001135701	25061	-	BC051814 TSC_hg19_v1_chr8_-_101963715	25295	-	DQ185048|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##BC041863|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##Y00345|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK130523|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK303120|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##NM_002568|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##NM_001135702|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135700|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135701|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##BC051814|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	0.996395	0.0	
chr1	117098447	117098566	reg1016354.p2	4.243	+	TSC_hg19_v1_chr1_-_116961216 AK309389	-137268	-	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	-137316	-	AK296362 NM_001160234	-172515	+	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	15109	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	15171	-	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	111877	-	AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3	0.904024	0.0	denovo_WM_7:11:0.860
chr11	65239699	65239804	reg1010941.p1	4.243	+	TSC_hg19_v1_chr11_+_65193527 AF080092 AF508303	-46228	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	-47351	+	TSC_hg19_v1_chr11_+_65190274 AK026198	-49473	+	TSC_hg19_v1_chr11_+_65265158 EF177381	25452	+	TSC_hg19_v1_chr11_+_65266515 BC025986 BX538238 FJ209305	26750	+	TSC_hg19_v1_chr11_+_65266869 BC104662	27048	+	AF080092|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF508303|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##EF177381|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BC025986|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BX538238|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	0.0	0.0	
chr12	122025319	122025440	reg1012349.p2	4.243	+	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	-6465	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	-7120	-	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-120305	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	39264	+	BC057760 NM_173855	82180	-	TSC_hg19_v1_chr12_+_122150657 AK126568 NM_001080825 BC127768 BC127769 BC035884	125365	+	BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC057760|MORN3|283385|MORN repeat containing 3##NM_173855|MORN3|283385|MORN repeat containing 3##AK126568|TMEM120B|144404|transmembrane protein 120B##NM_001080825|TMEM120B|144404|transmembrane protein 120B##BC127768|TMEM120B|144404|transmembrane protein 120B##BC127769|TMEM120B|144404|transmembrane protein 120B##BC035884|TMEM120B|144404|transmembrane protein 120B	0.989755	0.0	denovo_WM_7:99:0.835
chr20	32361898	32362034	reg1007803.p2	4.243	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-42170	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-53952	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-87769	-	TSC_hg19_v1_chr20_+_32399127 NM_176812	37120	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	37254	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	219513	+	BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.997927	0.0	
chr22	25942806	25942911	reg1011964.p2	4.243	+	TSC_hg19_v1_chr22_+_25844071 BC047380 BC037884	-98782	+	BC139736 NM_001135772	-165315	-	AL137651 NM_182492	-184335	-	TSC_hg19_v1_chr22_+_25960802 BC036797 NM_005160	17941	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	18088	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	195262	+	BC047380|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC037884|CRYBB2P1|1416|crystallin, beta B2 pseudogene 1##BC139736|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##NM_001135772|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##AL137651|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##NM_182492|LRP5L|91355|low density lipoprotein receptor-related protein 5-like##BC036797|ADRBK2|157|adrenergic, beta, receptor kinase 2##NM_005160|ADRBK2|157|adrenergic, beta, receptor kinase 2##BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB	0.0	0.0	
chr14	73129626	73129806	reg1002189.p3	4.242	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-729850	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-730563	+	AK294895 NM_001204423	-730900	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	231092	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	263419	+	AK098542 AF311602 NM_178441	323941	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	1.29373	0.0	denovo_WM_7:-45:0.304	denovo_WM_7:-61:0.213	denovo_WM_7:-62:0.608
chr16	1877125	1877281	reg1011289.p2	4.242	+	BC002627 AY576804 NM_001040427 NM_005326	-36	-	TSC_hg19_v1_chr16_-_1876812 AK308825 BC000840 AK299173 AK298174 AK299993	-375	-	TSC_hg19_v1_chr16_-_1876574 AK290155	-629	-	TSC_hg19_v1_chr16_+_1877223 BC063017 AL136720 NM_001018104 NM_001142398 NM_031208 AK094199 AB528126 AM392782 CR533499 CU687630	44	+	TSC_hg19_v1_chr16_-_1922086 NM_152764	44887	-	TSC_hg19_v1_chr16_-_1922166 NM_001163560	44966	-	BC002627|HAGH|3029|hydroxyacylglutathione hydrolase##AY576804|HAGH|3029|hydroxyacylglutathione hydrolase##NM_001040427|HAGH|3029|hydroxyacylglutathione hydrolase##NM_005326|HAGH|3029|hydroxyacylglutathione hydrolase##AK308825|HAGH|3029|hydroxyacylglutathione hydrolase##BC000840|HAGH|3029|hydroxyacylglutathione hydrolase##AK299173|HAGH|3029|hydroxyacylglutathione hydrolase##AK298174|HAGH|3029|hydroxyacylglutathione hydrolase##AK299993|HAGH|3029|hydroxyacylglutathione hydrolase##AK290155|HAGH|3029|hydroxyacylglutathione hydrolase##BC063017|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##AL136720|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_001018104|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_001142398|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_031208|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##AK094199|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##AM392782|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##CR533499|FAHD1|81889|fumarylacetoacetate hydrolase domain containing 1##NM_152764|C16orf73|254528|chromosome 16 open reading frame 73##NM_001163560|C16orf73|254528|chromosome 16 open reading frame 73	0.0	0.0	
chr2	32191698	32191781	reg1005560.p1	4.242	+	EU832809 GQ129244 HQ258121 M74047 EF560740 AK316597 BC112252 BC113641 NM_000348	-385736	-	TSC_hg19_v1_chr2_-_31637599 NM_000379	-554128	-	TSC_hg19_v1_chr2_-_31637569 U39487 D11456 U06117	-554168	-	TSC_hg19_v1_chr2_-_32235713 AF363446 BC018733 NM_001137602 NM_015955	43919	-	TSC_hg19_v1_chr2_-_32235732 AB041018	43989	-	TSC_hg19_v1_chr2_-_32235815 BC070046	44083	-	EU832809|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##GQ129244|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##HQ258121|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##M74047|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##EF560740|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##AK316597|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC112252|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC113641|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000348|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000379|XDH|7498|xanthine dehydrogenase##U39487|XDH|7498|xanthine dehydrogenase##D11456|XDH|7498|xanthine dehydrogenase##U06117|XDH|7498|xanthine dehydrogenase##AF363446|MEMO1|51072|mediator of cell motility 1##BC018733|MEMO1|51072|mediator of cell motility 1##NM_001137602|MEMO1|51072|mediator of cell motility 1##NM_015955|MEMO1|51072|mediator of cell motility 1##AB041018|MEMO1|51072|mediator of cell motility 1##BC070046|MEMO1|51072|mediator of cell motility 1	1.166746	0.0	denovo_WM_7:67:0.217
chr8	126726071	126726196	reg1012870.p1	4.242	+	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	-283554	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-622036	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-622076	-	TSC_hg19_v1_chr8_-_126963395 BX648371	237280	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	844422	-	NM_174911 TSC_hg19_v1_chr8_-_127570724	844591	-	BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B	0.0	0.0	
chr1	209345029	209345171	reg1010464.p1	4.241	+	TSC_hg19_v1_chr1_-_208417635 NM_025179	-927451	-	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	-1260543	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	-1260717	-	AK091113 AX746785 NM_001104548	257065	+	NM_020439 AK095713 AK289675 AF428261 BC032787	411960	+	TSC_hg19_v1_chr1_-_209824718 NM_001017402	479579	-	NM_025179|PLXNA2|5362|plexin A2##BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##NM_001104548|MIR205HG|642587|MIR205 host gene (non-protein coding)##NM_020439|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK095713|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK289675|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AF428261|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##BC032787|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##NM_001017402|LAMB3|3914|laminin, beta 3	2.045239	0.0	
chr20	30998946	30999034	reg1013388.p1	4.241	+	TSC_hg19_v1_chr20_+_30946787 AK122923	-52164	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	-52820	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	-133504	+	AB023195 TSC_hg19_v1_chr20_+_31017235	18221	+	TSC_hg19_v1_chr20_+_31037448 AL080086	38512	+	AK056286 TSC_hg19_v1_chr20_-_31071290 NM_080616	72275	-	AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##AB023195|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK056286|C20orf112|140688|chromosome 20 open reading frame 112##NM_080616|C20orf112|140688|chromosome 20 open reading frame 112	2.267879	0.0	denovo_WM_7:47:0.250	denovo_WM_7:-81:0.880
chr20	52482482	52482597	reg1008614.p1	4.241	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-271740	-	AF041259 NM_006526	-282904	-	AK302570 NM_001193421	-680718	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	204523	-	AK315220 NM_003657	204764	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	307981	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.161084	0.0	
chr4	151933926	151934059	reg1009829.p2	4.241	+	TSC_hg19_v1_chr4_-_151773972 BC172218	-159998	-	TSC_hg19_v1_chr4_-_151770612 AB208838	-163343	-	NM_006439	-430916	+	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	2426	-	AF216648 NM_006726	2656	-	TSC_hg19_v1_chr4_-_151936880 AK098039	2898	-	AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	1.241939	0.015126	denovo_WM_7:97:0.213
chr5	72392067	72392197	reg1014897.p2	4.241	+	TSC_hg19_v1_chr5_+_72251897 AK291782 BC006004 AK295141 BC014311 AL831971 AM393291 AM393840 CU676963	-140231	+	TSC_hg19_v1_chr5_+_72251873 AK056770	-140261	+	TSC_hg19_v1_chr5_+_72251813 BC137070 NM_001146032 NM_138782	-140347	+	TSC_hg19_v1_chr5_+_72416401 NM_001161342 NM_173490 BC018083	24304	+	AK315460 NM_153217 AK055830	76899	+	U13222 TSC_hg19_v1_chr5_-_72743884	351727	-	AK291782|FCHO2|115548|FCH domain only 2##BC006004|FCHO2|115548|FCH domain only 2##AK295141|FCHO2|115548|FCH domain only 2##BC014311|FCHO2|115548|FCH domain only 2##AL831971|FCHO2|115548|FCH domain only 2##AM393291|FCHO2|115548|FCH domain only 2##AM393840|FCHO2|115548|FCH domain only 2##BC137070|FCHO2|115548|FCH domain only 2##NM_001146032|FCHO2|115548|FCH domain only 2##NM_138782|FCHO2|115548|FCH domain only 2##NM_001161342|TMEM171|134285|transmembrane protein 171##NM_173490|TMEM171|134285|transmembrane protein 171##BC018083|TMEM171|134285|transmembrane protein 171##AK315460|TMEM174|134288|transmembrane protein 174##NM_153217|TMEM174|134288|transmembrane protein 174##AK055830|TMEM174|134288|transmembrane protein 174##U13222|FOXD1|2297|forkhead box D1	0.999625	0.0	
chr10	79256368	79256492	reg1011226.p1	4.240	+	AF267860 NM_032024	-1713912	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-2094865	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-2094949	-	AF118141 TSC_hg19_v1_chr10_-_79397246	140795	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	140906	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	140976	-	AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	1.752139	0.0	denovo_WM_7:-52:0.492	denovo_WM_7:-67:0.532
chr1	222817111	222817252	reg1010798.p1	4.240	+	TSC_hg19_v1_chr1_+_222791438 NM_198551 AK307412 AY359091 DQ166034	-25781	+	L39060 AK001054 AK290970 TSC_hg19_v1_chr1_-_222763247 BC013808 AK315740 AK299536 NM_001201536 NM_005681 NM_139352	-54004	-	AY358602 BC007638 BC016552 NM_024746	-95747	-	TSC_hg19_v1_chr1_+_222817647 AK296712 AX775845	471	+	AL833718 TSC_hg19_v1_chr1_-_222885817 BC015535 BC067805 AK289865 AK022868 BC171848 NM_022831	68581	-	TSC_hg19_v1_chr1_+_222885905 AK056983 NM_144695	68721	+	NM_198551|MIA3|375056|melanoma inhibitory activity family, member 3##AK307412|MIA3|375056|melanoma inhibitory activity family, member 3##AY359091|MIA3|375056|melanoma inhibitory activity family, member 3##DQ166034|MIA3|375056|melanoma inhibitory activity family, member 3##L39060|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK001054|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK290970|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##BC013808|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK315740|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AK299536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_001201536|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_005681|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##NM_139352|TAF1A|9015|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa##AY358602|HHIPL2|79802|HHIP-like 2##BC007638|HHIPL2|79802|HHIP-like 2##BC016552|HHIPL2|79802|HHIP-like 2##NM_024746|HHIPL2|79802|HHIP-like 2##AK296712|MIA3|375056|melanoma inhibitory activity family, member 3##AL833718|AIDA|64853|axin interactor, dorsalization associated##BC015535|AIDA|64853|axin interactor, dorsalization associated##BC067805|AIDA|64853|axin interactor, dorsalization associated##AK289865|AIDA|64853|axin interactor, dorsalization associated##AK022868|AIDA|64853|axin interactor, dorsalization associated##BC171848|AIDA|64853|axin interactor, dorsalization associated##NM_022831|AIDA|64853|axin interactor, dorsalization associated##AK056983|BROX|148362|BRO1 domain and CAAX motif containing##NM_144695|BROX|148362|BRO1 domain and CAAX motif containing	0.0	0.0	
chr14	34442178	34442317	reg1012262.p1	4.240	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-22098	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1033757	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1643711	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	489240	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	566638	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	657108	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.989796	0.0	denovo_WM_7:62:0.236	denovo_WM_7:63:0.236	denovo_WM_7:64:0.236	denovo_WM_7:65:0.236
chr16	3930816	3930960	reg1000347.p2	4.240	+	TSC_hg19_v1_chr16_-_3930715 U85962	-171	-	TSC_hg19_v1_chr16_-_3930711 U47741	-190	-	AB210043 NM_001079846 NM_004380	-768	-	BC136657 BC136658 TSC_hg19_v1_chr16_-_4165831	234931	-	BC151207 AB011092 BC151229 TSC_hg19_v1_chr16_-_4166045	235146	-	AJ133123 NM_001116 TSC_hg19_v1_chr16_-_4166252	235342	-	U85962|CREBBP|1387|CREB binding protein##U47741|CREBBP|1387|CREB binding protein##AB210043|CREBBP|1387|CREB binding protein##NM_001079846|CREBBP|1387|CREB binding protein##NM_004380|CREBBP|1387|CREB binding protein##BC136657|ADCY9|115|adenylate cyclase 9##BC136658|ADCY9|115|adenylate cyclase 9##BC151207|ADCY9|115|adenylate cyclase 9##AB011092|ADCY9|115|adenylate cyclase 9##BC151229|ADCY9|115|adenylate cyclase 9##AJ133123|ADCY9|115|adenylate cyclase 9##NM_001116|ADCY9|115|adenylate cyclase 9	0.0	0.0	
chr17	47075194	47075374	reg1002814.p2	4.240	+	TSC_hg19_v1_chr17_+_47074830 NM_001160423 NM_006546 AF198254 AK313229	-454	+	BC096146 BC096147 BC096148 BC096149 BC069100 BC069663 BC069686 BC069746 M18185 NM_004123	-29331	-	AB464229 CU679209 CU691602 TSC_hg19_v1_chr17_-_47022173 AF156102 BC008976 NM_007241 BC038830	-53148	-	AK302876 NM_001159388	134537	+	TSC_hg19_v1_chr17_+_47210130 NM_001159387 AJ517771	134816	+	AF510036 AJ517770 NM_153446 BC113675 BC113677 HQ258321 HQ258467	135073	+	NM_001160423|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##NM_006546|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AF198254|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##AK313229|IGF2BP1|10642|insulin-like growth factor 2 mRNA binding protein 1##BC096146|GIP|2695|gastric inhibitory polypeptide##BC096147|GIP|2695|gastric inhibitory polypeptide##BC096148|GIP|2695|gastric inhibitory polypeptide##BC096149|GIP|2695|gastric inhibitory polypeptide##BC069100|GIP|2695|gastric inhibitory polypeptide##BC069663|GIP|2695|gastric inhibitory polypeptide##BC069686|GIP|2695|gastric inhibitory polypeptide##BC069746|GIP|2695|gastric inhibitory polypeptide##M18185|GIP|2695|gastric inhibitory polypeptide##NM_004123|GIP|2695|gastric inhibitory polypeptide##AF156102|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC008976|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##NM_007241|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##BC038830|SNF8|11267|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)##AK302876|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##NM_001159388|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##NM_001159387|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##AJ517771|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##AF510036|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##AJ517770|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##NM_153446|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##BC113675|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##BC113677|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##HQ258321|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2##HQ258467|B4GALNT2|124872|beta-1,4-N-acetyl-galactosaminyl transferase 2	0.0	0.015891	
chrX	122864774	122864880	reg1010883.p1	4.240	+	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	-546587	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-2683387	+	BC029540 NM_001080141 NM_001080146	-2745190	-	TSC_hg19_v1_chrX_-_122866885 AK001758	2056	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	2070	-	TSC_hg19_v1_chrX_+_122993844 AK313883 NM_001204401 NM_001167 AK309704 U32974 BC032729	129115	+	NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2##AK313883|XIAP|331|X-linked inhibitor of apoptosis##NM_001204401|XIAP|331|X-linked inhibitor of apoptosis##NM_001167|XIAP|331|X-linked inhibitor of apoptosis##AK309704|XIAP|331|X-linked inhibitor of apoptosis##U32974|XIAP|331|X-linked inhibitor of apoptosis##BC032729|XIAP|331|X-linked inhibitor of apoptosis	0.965742	0.0	denovo_WM_7:-18:0.966
chr10	104531903	104531998	reg1006906.p1	4.239	+	TSC_hg19_v1_chr10_+_104503740 AY656172	-28192	+	TSC_hg19_v1_chr10_+_104503724 NM_001083913	-28225	+	TSC_hg19_v1_chr10_+_104503723 AK308843 AK316452	-28233	+	NM_017787 TSC_hg19_v1_chr10_+_104535970 AY656171 AK056285 BC113857 BC114465	4005	+	TSC_hg19_v1_chr10_+_104590431 CU687687	58494	+	AK308466 BT020000 CU687686 BC062997 BC063388 BC032843 M14564 TSC_hg19_v1_chr10_-_104597171 AK289898 AK094106 AK312235 NM_000102	65234	-	AY656172|C10orf26|54838|chromosome 10 open reading frame 26##NM_001083913|C10orf26|54838|chromosome 10 open reading frame 26##AK308843|C10orf26|54838|chromosome 10 open reading frame 26##AK316452|C10orf26|54838|chromosome 10 open reading frame 26##NM_017787|C10orf26|54838|chromosome 10 open reading frame 26##AY656171|C10orf26|54838|chromosome 10 open reading frame 26##AK056285|C10orf26|54838|chromosome 10 open reading frame 26##BC113857|C10orf26|54838|chromosome 10 open reading frame 26##BC114465|C10orf26|54838|chromosome 10 open reading frame 26##AK308466|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BT020000|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC062997|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC063388|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##BC032843|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##M14564|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK289898|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK094106|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##AK312235|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1##NM_000102|CYP17A1|1586|cytochrome P450, family 17, subfamily A, polypeptide 1	1.04474	0.0	
chr1	109643762	109643870	reg1012545.p2	4.239	+	BC071822 TSC_hg19_v1_chr1_+_109642814	-1002	+	BC066918 AK075191 TSC_hg19_v1_chr1_+_109633380 AF164793 AK310192 BC008739 BC065186 NM_020141 AK291293 BC067116	-10422	+	AB587451 TSC_hg19_v1_chr1_-_109618626 X84003 BC017821 BC121180 BC121181 AK312158 NM_005645	-25215	-	BC127904 BC141949 BC141950 BC150515 TSC_hg19_v1_chr1_+_109648698	4829	+	NM_001122961	12662	-	TSC_hg19_v1_chr1_+_109656510 AY358366	12703	+	BC071822|SCARNA2|677766|small Cajal body-specific RNA 2##BC066918|TMEM167B|56900|transmembrane protein 167B##AK075191|TMEM167B|56900|transmembrane protein 167B##AF164793|TMEM167B|56900|transmembrane protein 167B##AK310192|TMEM167B|56900|transmembrane protein 167B##BC008739|TMEM167B|56900|transmembrane protein 167B##BC065186|TMEM167B|56900|transmembrane protein 167B##NM_020141|TMEM167B|56900|transmembrane protein 167B##AK291293|TMEM167B|56900|transmembrane protein 167B##BC067116|TMEM167B|56900|transmembrane protein 167B##X84003|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121180|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##BC121181|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##AK312158|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##NM_005645|TAF13|6884|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa##NM_001122961|C1orf194|127003|chromosome 1 open reading frame 194##AY358366|KIAA1324|57535|KIAA1324	1.053327	0.0	denovo_WM_7:-47:0.692
chr11	65769660	65769745	reg1011205.p1	4.239	+	AK094129 TSC_hg19_v1_chr11_-_65769629 BC005131 AK311891 NM_001242481 NM_001242482 NM_001242483 NM_001242484 NM_001242485 NM_001242486 NM_032325	-72	-	TSC_hg19_v1_chr11_+_65769409 AF068235 NM_001143985 NM_003860	-223	+	NM_005146 TSC_hg19_v1_chr11_+_65729203 AK223016 AK293200 AK297589 AK309104 AK298184 BC001058 AB006198 AF353625 DQ891694 EU176645 BT006637 Y14314	-40433	+	TSC_hg19_v1_chr11_+_65769774 BC107702	117	+	TSC_hg19_v1_chr11_+_65769954 AF044773	218	+	TSC_hg19_v1_chr11_+_65769973 BC005942 AK311961 BC008705	422	+	AK094129|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##BC005131|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##AK311891|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242481|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242482|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242483|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242484|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242485|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_001242486|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##NM_032325|EIF1AD|84285|eukaryotic translation initiation factor 1A domain containing##AF068235|BANF1|8815|barrier to autointegration factor 1##NM_001143985|BANF1|8815|barrier to autointegration factor 1##NM_003860|BANF1|8815|barrier to autointegration factor 1##NM_005146|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK223016|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK293200|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK297589|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AK298184|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BC001058|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AB006198|SART1|9092|squamous cell carcinoma antigen recognized by T cells##AF353625|SART1|9092|squamous cell carcinoma antigen recognized by T cells##DQ891694|SART1|9092|squamous cell carcinoma antigen recognized by T cells##EU176645|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BT006637|SART1|9092|squamous cell carcinoma antigen recognized by T cells##Y14314|SART1|9092|squamous cell carcinoma antigen recognized by T cells##BC107702|BANF1|8815|barrier to autointegration factor 1##AF044773|BANF1|8815|barrier to autointegration factor 1##BC005942|BANF1|8815|barrier to autointegration factor 1##AK311961|BANF1|8815|barrier to autointegration factor 1##BC008705|BANF1|8815|barrier to autointegration factor 1	0.0	0.0	
chr16	71599344	71599524	reg1000606.p2	4.239	+	NM_005769 AF131235 NM_001166395 AK026635 AK074746	-39341	+	AK292260 BC030658 AK057330 BC047091 NM_006961	-76219	-	AK123826 TSC_hg19_v1_chr16_+_71496196	-103246	+	X55675 BC130534 BC020707 BC022292 X52520 AK313380 NM_000353	11538	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	60663	+	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	149266	-	NM_005769|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AF131235|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##NM_001166395|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK026635|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK074746|CHST4|10164|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4##AK292260|ZNF19|7567|zinc finger protein 19##AK057330|ZNF19|7567|zinc finger protein 19##BC047091|ZNF19|7567|zinc finger protein 19##NM_006961|ZNF19|7567|zinc finger protein 19##X55675|TAT|6898|tyrosine aminotransferase##BC130534|TAT|6898|tyrosine aminotransferase##BC020707|TAT|6898|tyrosine aminotransferase##BC022292|TAT|6898|tyrosine aminotransferase##X52520|TAT|6898|tyrosine aminotransferase##AK313380|TAT|6898|tyrosine aminotransferase##NM_000353|TAT|6898|tyrosine aminotransferase##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2	0.0	0.0	
chr16	9184814	9184967	reg1009138.p1	4.239	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-127595	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	-222030	-	NM_001042476 BC001333	-222638	-	TSC_hg19_v1_chr16_+_9185545 NM_014117	650	+	TSC_hg19_v1_chr16_+_9185577 BC113570	713	+	BC143273 U09002 NM_001134408	1090943	-	NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##BC113570|C16orf72|29035|chromosome 16 open reading frame 72##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.99773	0.0	denovo_WM_7:-49:0.238	denovo_WM_7:-50:0.238	denovo_WM_7:-51:0.238	denovo_WM_7:-52:0.238
chr1	937425	937515	reg1005056.p1	4.239	+	BC012351 TSC_hg19_v1_chr1_-_935476 NM_001142467 NM_021170	-1960	-	AB048791 DQ895490 TSC_hg19_v1_chr1_-_935444	-2072	-	AL136730 NM_001160184 NM_032129 BC101386 BC101387 AB463180 AM393848 BC141658	-35578	+	NM_005101 TSC_hg19_v1_chr1_+_948876 M13755 BC009507	11409	+	TSC_hg19_v1_chr1_+_955499 AB191264 NM_198576	18026	+	TSC_hg19_v1_chr1_+_955536 AB385240	18073	+	BC012351|HES4|57801|hairy and enhancer of split 4 (Drosophila)##NM_001142467|HES4|57801|hairy and enhancer of split 4 (Drosophila)##NM_021170|HES4|57801|hairy and enhancer of split 4 (Drosophila)##AB048791|HES4|57801|hairy and enhancer of split 4 (Drosophila)##DQ895490|HES4|57801|hairy and enhancer of split 4 (Drosophila)##AL136730|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_001160184|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_032129|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC101386|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC101387|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##AM393848|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC141658|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_005101|ISG15|9636|ISG15 ubiquitin-like modifier##M13755|ISG15|9636|ISG15 ubiquitin-like modifier##BC009507|ISG15|9636|ISG15 ubiquitin-like modifier##AB191264|AGRN|375790|agrin##NM_198576|AGRN|375790|agrin	0.8831	0.405943	CTCF.p2:-53:0.406	denovo_WM_7:103:0.269	denovo_WM_7:105:0.271
chr19	44038166	44038262	reg1011958.p2	4.239	+	TSC_hg19_v1_chr19_+_44037567 BC043611 NM_174945 AK301820	-702	+	TSC_hg19_v1_chr19_-_44031351 AM392804 AB463613 AK309880 BC008250 AK315346 D83198 NM_014297	-6853	-	BC029299 NM_198850 BC070094	-29179	-	CR456728 AB384718 BC023593 TSC_hg19_v1_chr19_-_44079680 AB208781	41434	-	AK293542 TSC_hg19_v1_chr19_-_44079716 AK300163 AK315332 NM_006297	41513	-	AK296854 NM_001193621	42737	+	BC043611|ZNF575|284346|zinc finger protein 575##NM_174945|ZNF575|284346|zinc finger protein 575##AK301820|ZNF575|284346|zinc finger protein 575##AM392804|ETHE1|23474|ethylmalonic encephalopathy 1##AK309880|ETHE1|23474|ethylmalonic encephalopathy 1##BC008250|ETHE1|23474|ethylmalonic encephalopathy 1##AK315346|ETHE1|23474|ethylmalonic encephalopathy 1##D83198|ETHE1|23474|ethylmalonic encephalopathy 1##NM_014297|ETHE1|23474|ethylmalonic encephalopathy 1##BC029299|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##NM_198850|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##BC070094|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##CR456728|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##BC023593|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AB208781|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK293542|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK300163|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK315332|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##NM_006297|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK296854|LOC390940|390940|uncharacterized protein ENSP00000244321##NM_001193621|LOC390940|390940|uncharacterized protein ENSP00000244321	0.0	0.0	
chr3	81866218	81866372	reg1012417.p2	4.239	+	TSC_hg19_v1_chr3_-_81810971 NM_000158	-55353	-	TSC_hg19_v1_chr3_-_81810866 AB209731 BC012098	-55447	-	TSC_hg19_v1_chr3_-_81810802 AK297939	-55490	-	BC031255 TSC_hg19_v1_chr3_+_82035308	169007	+	TSC_hg19_v1_chr3_+_85008139 AB646739 BC105999 NM_001167674 NM_001167675 AK295885 BC063484 AL834270	3141834	+	AF538973 NM_153184	3909336	+	NM_000158|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB209731|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##BC012098|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK297939|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB646739|CADM2|253559|cell adhesion molecule 2##BC105999|CADM2|253559|cell adhesion molecule 2##NM_001167674|CADM2|253559|cell adhesion molecule 2##NM_001167675|CADM2|253559|cell adhesion molecule 2##AK295885|CADM2|253559|cell adhesion molecule 2##AL834270|CADM2|253559|cell adhesion molecule 2##AF538973|CADM2|253559|cell adhesion molecule 2##NM_153184|CADM2|253559|cell adhesion molecule 2	0.0	0.0	
chr15	40567311	40567491	reg1003447.p2	4.238	+	TSC_hg19_v1_chr15_+_40545348 BC035596	-22035	+	AK095915 NM_001039905 BC171826	-22262	-	NM_020168 AJ236915	-35348	+	NM_001190479	7385	-	BT006905 CU674468 TSC_hg19_v1_chr15_-_40599904 AB209583	32495	-	TSC_hg19_v1_chr15_-_40599986 BC000939	32590	-	BC035596|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK095915|C15orf56|644809|chromosome 15 open reading frame 56##NM_001039905|C15orf56|644809|chromosome 15 open reading frame 56##NM_020168|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AJ236915|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_001190479|ANKRD63|100131244|ankyrin repeat domain 63##BT006905|PLCB2|5330|phospholipase C, beta 2##AB209583|PLCB2|5330|phospholipase C, beta 2##BC000939|PLCB2|5330|phospholipase C, beta 2	0.998079	0.0	
chr15	91382794	91382918	reg1010102.p2	4.238	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	-122242	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-309660	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-451317	+	NM_002569 X17094	29028	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	44845	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	45417	+	BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene	0.987889	0.0	denovo_WM_7:-51:0.276	denovo_WM_7:-52:0.712
chr19	11050597	11050686	reg1003677.p1	4.238	+	TSC_hg19_v1_chr19_+_11039470 BC011833 NM_138358 BC007244 BC005075	-11184	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	-11402	-	TSC_hg19_v1_chr19_+_10982381 AL833242	-68205	+	TSC_hg19_v1_chr19_+_11071705 NM_001128844 NM_003072 AK290033 BC150298 BC139917 BC139924	21005	+	TSC_hg19_v1_chr19_+_11071717 BC007302	21074	+	TSC_hg19_v1_chr19_+_11071720 BC035916	21109	+	BC011833|C19orf52|90580|chromosome 19 open reading frame 52##NM_138358|C19orf52|90580|chromosome 19 open reading frame 52##BC007244|C19orf52|90580|chromosome 19 open reading frame 52##BC005075|C19orf52|90580|chromosome 19 open reading frame 52##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##NM_001128844|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_003072|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AK290033|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC150298|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139917|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC139924|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	2.963009	0.0	
chr2	10107819	10107980	reg1014919.p2	4.238	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	-16049	+	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	-124279	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-336774	-	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	75893	+	NM_001177718 AK302880 TSC_hg19_v1_chr2_+_10184414	76510	+	AB463821 TSC_hg19_v1_chr2_+_10186406	78446	+	NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11##NM_001177718|KLF11|8462|Kruppel-like factor 11##AK302880|KLF11|8462|Kruppel-like factor 11	0.981392	0.0	denovo_WM_7:28:0.397	denovo_WM_7:29:0.470
chr5	124077465	124077645	reg1001088.p3	4.238	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1229673	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1318411	-	NM_001136239 AK297992 AF272898 AF272899	-1652711	+	BC131507 AB033107 BC151226 NM_020747	3233	-	NM_001146319 AK316288 AK300154	1618259	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1681288	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr9	9790426	9790531	reg1013463.p2	4.238	+	TSC_hg19_v1_chr9_+_8858136 AK094342	-932345	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-1056559	-	TSC_hg19_v1_chr9_+_8713275 AY779046	-1077186	+	BC028038 NM_002839	822244	-	NM_000550 X51420 BC052608	2902947	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	2984538	+	BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##AY779046|RPL18A|6142|ribosomal protein L18a##BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150	0.0	0.100938	
chr15	56532100	56532178	reg1013051.p1	4.237	+	TSC_hg19_v1_chr15_-_56388663 AL832584	-143442	-	TSC_hg19_v1_chr15_-_56285776 BC035707 AK304394 AY550969 BC152452 BC152562 D42055 NM_006154	-246344	-	BC136605 BC144284 BC144285 AL832063 NM_198400	-322823	-	TSC_hg19_v1_chr15_-_56535479 NM_022841	3343	-	TSC_hg19_v1_chr15_+_56657623 AK294960 BC028119 NM_198524 AL832050	125490	+	TSC_hg19_v1_chr15_-_56757262 BC031046 AK310029 BC012554 BC034991 AK002084 NM_018365	225147	-	AL832584|RFX7|64864|regulatory factor X, 7##BC035707|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AK304394|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AY550969|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC152452|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC152562|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##D42055|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_006154|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC136605|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC144284|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC144285|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AL832063|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_198400|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_022841|RFX7|64864|regulatory factor X, 7##AK294960|TEX9|374618|testis expressed 9##BC028119|TEX9|374618|testis expressed 9##NM_198524|TEX9|374618|testis expressed 9##AL832050|TEX9|374618|testis expressed 9##BC031046|MNS1|55329|meiosis-specific nuclear structural 1##BC012554|MNS1|55329|meiosis-specific nuclear structural 1##BC034991|MNS1|55329|meiosis-specific nuclear structural 1##AK002084|MNS1|55329|meiosis-specific nuclear structural 1##NM_018365|MNS1|55329|meiosis-specific nuclear structural 1	0.994622	0.0	
chr19	58313541	58313703	reg1015095.p1	4.237	+	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-32493	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-32605	+	TSC_hg19_v1_chr19_+_58258208 BX957217 CR749390 CR936802 AK055448	-55410	+	AK097041 AK293445 NM_024762	12658	-	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	17465	+	AK122919 NM_001204818 AK299091	28048	+	BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##BX957217|ZNF776|284309|zinc finger protein 776##CR749390|ZNF776|284309|zinc finger protein 776##CR936802|ZNF776|284309|zinc finger protein 776##AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein	0.731525	0.0	denovo_WM_7:-27:0.516
chr20	49434909	49435004	reg1009476.p1	4.237	+	AF361220 NM_001010974 NM_017843 NM_198799 TSC_hg19_v1_chr20_+_49411542 AK000502 BC038381 BC047337 AJ511266 BC056883	-23438	+	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	-86887	+	TSC_hg19_v1_chr20_-_49308074 AK124347	-126879	-	TSC_hg19_v1_chr20_-_49547964 AF250860 NM_015339 NM_181442 BC075794	112767	-	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	140107	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	140412	+	AF361220|BCAS4|55653|breast carcinoma amplified sequence 4##NM_001010974|BCAS4|55653|breast carcinoma amplified sequence 4##NM_017843|BCAS4|55653|breast carcinoma amplified sequence 4##NM_198799|BCAS4|55653|breast carcinoma amplified sequence 4##AK000502|BCAS4|55653|breast carcinoma amplified sequence 4##BC038381|BCAS4|55653|breast carcinoma amplified sequence 4##BC047337|BCAS4|55653|breast carcinoma amplified sequence 4##AJ511266|BCAS4|55653|breast carcinoma amplified sequence 4##BC056883|BCAS4|55653|breast carcinoma amplified sequence 4##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##AF250860|ADNP|23394|activity-dependent neuroprotector homeobox##NM_015339|ADNP|23394|activity-dependent neuroprotector homeobox##NM_181442|ADNP|23394|activity-dependent neuroprotector homeobox##BC075794|ADNP|23394|activity-dependent neuroprotector homeobox##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3	0.0	0.0	
chr2	171084204	171084358	reg1011847.p2	4.237	+	AF369908 AF391554 AF391555 AF391556 AF391557 AF391558 NM_001083615 NM_001171642 NM_138995 BC136620 BC144307	-49596	+	TSC_hg19_v1_chr2_+_170683963 NM_172070	-400323	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	-402896	-	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	487577	+	TSC_hg19_v1_chr2_+_171571942 AB464708	487696	+	TSC_hg19_v1_chr2_+_171572707 BC069026	488429	+	AF369908|MYO3B|140469|myosin IIIB##AF391554|MYO3B|140469|myosin IIIB##AF391555|MYO3B|140469|myosin IIIB##AF391556|MYO3B|140469|myosin IIIB##AF391557|MYO3B|140469|myosin IIIB##AF391558|MYO3B|140469|myosin IIIB##NM_001083615|MYO3B|140469|myosin IIIB##NM_001171642|MYO3B|140469|myosin IIIB##NM_138995|MYO3B|140469|myosin IIIB##BC136620|MYO3B|140469|myosin IIIB##BC144307|MYO3B|140469|myosin IIIB##NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor##BC069026|SP5|389058|Sp5 transcription factor	0.0	0.0	
chr5	160226266	160226380	reg1013093.p2	4.237	+	AK025130 TSC_hg19_v1_chr5_-_160112393	-113984	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-377420	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-377469	+	AB018258 AK295081 AK090832 AX746642 NM_025153	52808	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	748803	-	NM_000811	886334	+	AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6	0.0	0.0	
chr10	61834181	61834306	reg1012403.p2	4.236	+	D90075 BC064391 TSC_hg19_v1_chr10_-_61666249 BC036757 BC022284 AK292593 NM_005436	-167919	-	AB590767 TSC_hg19_v1_chr10_-_61666205 S72869	-168042	-	AK126643 TSC_hg19_v1_chr10_-_61469461 NM_194298	-364519	-	AK292927 AK092527 NM_001149	66473	-	U13616 NM_020987	315317	-	AB209308 TSC_hg19_v1_chr10_-_62332715 AK126851 NM_001204404	498447	-	BC064391|CCDC6|8030|coiled-coil domain containing 6##BC036757|CCDC6|8030|coiled-coil domain containing 6##BC022284|CCDC6|8030|coiled-coil domain containing 6##AK292593|CCDC6|8030|coiled-coil domain containing 6##NM_005436|CCDC6|8030|coiled-coil domain containing 6##S72869|CCDC6|8030|coiled-coil domain containing 6##AK126643|LOC100129721|100129721|uncharacterized LOC100129721##NM_194298|SLC16A9|220963|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)##AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##U13616|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_020987|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AB209308|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK126851|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001204404|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	0.0	0.0	
chr13	40976751	40976884	reg1013116.p1	4.236	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-746956	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-799455	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-799490	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	263895	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	368475	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	368515	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.998725	0.0	
chr16	8986379	8986542	reg1010183.p3	4.235	+	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	-23600	-	NM_001042476 BC001333	-24208	-	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-94762	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	70835	-	TSC_hg19_v1_chr16_+_9185545 NM_014117	199080	+	TSC_hg19_v1_chr16_+_9185577 BC113570	199143	+	BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##BC113570|C16orf72|29035|chromosome 16 open reading frame 72	1.318621	0.0	denovo_WM_7:11:0.318	denovo_WM_7:26:0.272
chr18	13585929	13586109	reg1001454.p1	4.235	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-367234	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-594674	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-637955	+	NM_001003674 NM_001003675	25645	+	AF009426 AF009427 NM_004338 NM_181483	34847	+	TSC_hg19_v1_chr18_-_13726549 AK055618	140487	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr2	158263581	158263709	reg1014620.p2	4.235	+	NM_001009959 AK296477	-79489	-	AB384578 CU693224 HQ447390 AB033015 DQ334271 BC026345 AK295051 AK295844 NM_020711	-81361	-	BC142676 BC142703 AY277591 NM_014568 AK292154 BC144211	-149352	+	L06633 AB528875 CU690346 AF068836 BC036449 TSC_hg19_v1_chr2_-_158300602 AK312753 NM_004288	36919	-	TSC_hg19_v1_chr2_-_158454049 AF525679 NM_001111031	190430	-	AB590288 CU692676 DQ895570 EU176205 AF525680 AF525681 AY127050 TSC_hg19_v1_chr2_-_158485239	221553	-	NM_001009959|ERMN|57471|ermin, ERM-like protein##AK296477|ERMN|57471|ermin, ERM-like protein##HQ447390|ERMN|57471|ermin, ERM-like protein##AB033015|ERMN|57471|ermin, ERM-like protein##DQ334271|ERMN|57471|ermin, ERM-like protein##BC026345|ERMN|57471|ermin, ERM-like protein##AK295844|ERMN|57471|ermin, ERM-like protein##NM_020711|ERMN|57471|ermin, ERM-like protein##BC142676|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC142703|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AY277591|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##NM_014568|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##AK292154|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##BC144211|GALNT5|11227|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)##L06633|CYTIP|9595|cytohesin 1 interacting protein##AF068836|CYTIP|9595|cytohesin 1 interacting protein##BC036449|CYTIP|9595|cytohesin 1 interacting protein##AK312753|CYTIP|9595|cytohesin 1 interacting protein##NM_004288|CYTIP|9595|cytohesin 1 interacting protein##AF525679|ACVR1C|130399|activin A receptor, type IC##NM_001111031|ACVR1C|130399|activin A receptor, type IC##DQ895570|ACVR1C|130399|activin A receptor, type IC##EU176205|ACVR1C|130399|activin A receptor, type IC##AF525680|ACVR1C|130399|activin A receptor, type IC##AF525681|ACVR1C|130399|activin A receptor, type IC##AY127050|ACVR1C|130399|activin A receptor, type IC	1.977587	0.0	denovo_WM_7:42:0.858	denovo_WM_7:66:0.298	denovo_WM_7:67:0.298	denovo_WM_7:68:0.298
chr2	172878558	172878738	reg1015608.p2	4.235	+	AY374142 NM_199227 TSC_hg19_v1_chr2_+_172864861 BC113644 BC143913 BC029123	-13801	+	TSC_hg19_v1_chr2_-_172864773 AK095742	-13867	-	TSC_hg19_v1_chr2_+_172821875 BC018682	-56711	+	AY257976 NM_001038493 NM_178120 AK290503 AK095266 BC036189 BC013010 AK308842 BC053351 AB527494 EU176288 EU176603	71688	+	L07919 TSC_hg19_v1_chr2_-_172967055	88386	-	TSC_hg19_v1_chr2_-_172967234 HQ258018 AB208823 AK297503 BC032558 NM_004405	88707	-	AY374142|METAP1D|254042|methionyl aminopeptidase type 1D (mitochondrial)##NM_199227|METAP1D|254042|methionyl aminopeptidase type 1D (mitochondrial)##BC113644|METAP1D|254042|methionyl aminopeptidase type 1D (mitochondrial)##BC143913|METAP1D|254042|methionyl aminopeptidase type 1D (mitochondrial)##BC029123|METAP1D|254042|methionyl aminopeptidase type 1D (mitochondrial)##BC018682|HAT1|8520|histone acetyltransferase 1##AY257976|DLX1|1745|distal-less homeobox 1##NM_001038493|DLX1|1745|distal-less homeobox 1##NM_178120|DLX1|1745|distal-less homeobox 1##AK290503|DLX1|1745|distal-less homeobox 1##AK095266|DLX1|1745|distal-less homeobox 1##BC036189|DLX1|1745|distal-less homeobox 1##BC013010|DLX1|1745|distal-less homeobox 1##AK308842|DLX1|1745|distal-less homeobox 1##BC053351|DLX1|1745|distal-less homeobox 1##EU176288|DLX1|1745|distal-less homeobox 1##EU176603|DLX1|1745|distal-less homeobox 1##L07919|DLX2|1746|distal-less homeobox 2##HQ258018|DLX2|1746|distal-less homeobox 2##AB208823|DLX2|1746|distal-less homeobox 2##AK297503|DLX2|1746|distal-less homeobox 2##BC032558|DLX2|1746|distal-less homeobox 2##NM_004405|DLX2|1746|distal-less homeobox 2	0.992714	0.0	denovo_WM_7:85:0.475	denovo_WM_7:88:0.317
chr4	88348234	88348379	reg1009679.p1	4.235	+	TSC_hg19_v1_chr4_+_88343781 NM_001248011 NM_024047 AK027295 AK074845 NM_198038 AF265341 AF273028 AK075408 AK308028 BC000542 AY359123 CU674266	-4427	+	TSC_hg19_v1_chr4_-_88312341 AK075348 BC008650 BC036001 BC016367 BC011995 NM_016245	-35915	-	AB529195 CU690256 CU679009 AF273056 AY358553 TSC_hg19_v1_chr4_-_88312322 BC014327 BC021673	-36035	-	AK316533 AY513278 AK300956 BC010383 AK294335 BC022484 AK298039 X82157 BX647713 AL833430 AK304628 BC033721 X86693 AK304494 TSC_hg19_v1_chr4_-_88450525	102080	-	TSC_hg19_v1_chr4_-_88450604 NM_001128310 NM_004684	102321	-	NM_014208	181374	+	NM_001248011|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##NM_024047|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK027295|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK074845|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##NM_198038|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AF265341|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AF273028|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK075408|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK308028|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##BC000542|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AY359123|NUDT9|53343|nudix (nucleoside diphosphate linked moiety X)-type motif 9##AK075348|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC008650|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC036001|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC016367|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC011995|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##NM_016245|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AF273056|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AY358553|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC014327|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##BC021673|HSD17B11|51170|hydroxysteroid (17-beta) dehydrogenase 11##AK316533|SPARCL1|8404|SPARC-like 1 (hevin)##AY513278|SPARCL1|8404|SPARC-like 1 (hevin)##AK300956|SPARCL1|8404|SPARC-like 1 (hevin)##BC010383|SPARCL1|8404|SPARC-like 1 (hevin)##AK294335|SPARCL1|8404|SPARC-like 1 (hevin)##BC022484|SPARCL1|8404|SPARC-like 1 (hevin)##AK298039|SPARCL1|8404|SPARC-like 1 (hevin)##X82157|SPARCL1|8404|SPARC-like 1 (hevin)##BX647713|SPARCL1|8404|SPARC-like 1 (hevin)##AL833430|SPARCL1|8404|SPARC-like 1 (hevin)##AK304628|SPARCL1|8404|SPARC-like 1 (hevin)##BC033721|SPARCL1|8404|SPARC-like 1 (hevin)##X86693|SPARCL1|8404|SPARC-like 1 (hevin)##AK304494|SPARCL1|8404|SPARC-like 1 (hevin)##NM_001128310|SPARCL1|8404|SPARC-like 1 (hevin)##NM_004684|SPARCL1|8404|SPARC-like 1 (hevin)##NM_014208|DSPP|1834|dentin sialophosphoprotein	1.997726	0.0	denovo_WM_7:-8:0.964	denovo_WM_7:-25:0.457	denovo_WM_7:-26:0.457
chr12	775924	776080	reg1009090.p1	4.234	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-3287	-	TSC_hg19_v1_chr12_-_752800 AK298043	-23183	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-23824	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	86154	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	86754	+	BC013629 TSC_hg19_v1_chr12_+_1017145	241080	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.0	0.0	
chr16	87402166	87402318	reg1015244.p2	4.234	+	TSC_hg19_v1_chr16_-_87350999 BC015536 AK026130 NM_001195124 NM_001195125	-51256	-	TSC_hg19_v1_chr16_-_87350760 AB528835 AM392822 AM393070	-51442	-	BC100027 NM_005250	-790128	+	TSC_hg19_v1_chr16_-_87417364 AY736035 AF428140 BC012748 BC002985 NM_024735	15120	-	TSC_hg19_v1_chr16_+_87425387 BC041874	23152	+	TSC_hg19_v1_chr16_+_87425818 NM_022818	23567	+	BC015536|C16orf95|100506581|chromosome 16 open reading frame 95##AK026130|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195124|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195125|C16orf95|100506581|chromosome 16 open reading frame 95##AM392822|C16orf95|100506581|chromosome 16 open reading frame 95##AM393070|C16orf95|100506581|chromosome 16 open reading frame 95##BC100027|FOXL1|2300|forkhead box L1##NM_005250|FOXL1|2300|forkhead box L1##AY736035|FBXO31|79791|F-box protein 31##AF428140|FBXO31|79791|F-box protein 31##BC012748|FBXO31|79791|F-box protein 31##BC002985|FBXO31|79791|F-box protein 31##NM_024735|FBXO31|79791|F-box protein 31##BC041874|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta##NM_022818|MAP1LC3B|81631|microtubule-associated protein 1 light chain 3 beta	0.99702	0.0	denovo_WM_7:-1:0.313	denovo_WM_7:-2:0.313	denovo_WM_7:-3:0.313
chr17	7788803	7788962	reg1002850.p2	4.234	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	-771	+	TSC_hg19_v1_chr17_+_7761320 BC060779 AK289520	-27537	+	BC033861 NM_032356 BC051846 TSC_hg19_v1_chr17_-_7761246	-27674	-	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	3219	+	TSC_hg19_v1_chr17_+_7812703 AK096555	23878	+	AF016411 BC096232 BC096233 BC096234 BC099634 NM_004732	43870	-	NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##BC060779|CYB5D1|124637|cytochrome b5 domain containing 1##AK289520|CYB5D1|124637|cytochrome b5 domain containing 1##BC033861|LSMD1|84316|LSM domain containing 1##NM_032356|LSMD1|84316|LSM domain containing 1##BC051846|LSMD1|84316|LSM domain containing 1##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3##AF016411|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096232|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096233|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096234|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC099634|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##NM_004732|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3	0.0	0.0	
chr2	74244512	74244620	reg1013759.p1	4.234	+	TSC_hg19_v1_chr2_+_74154019 X97386	-90520	+	TSC_hg19_v1_chr2_+_74154006 BC024019 U41668 BC001121 BC015757	-90566	+	TSC_hg19_v1_chr2_+_74153968 NM_080916 NM_080918	-90616	+	NM_144993	28883	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	130452	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	130654	+	X97386|DGUOK|1716|deoxyguanosine kinase##BC024019|DGUOK|1716|deoxyguanosine kinase##U41668|DGUOK|1716|deoxyguanosine kinase##BC001121|DGUOK|1716|deoxyguanosine kinase##BC015757|DGUOK|1716|deoxyguanosine kinase##NM_080916|DGUOK|1716|deoxyguanosine kinase##NM_080918|DGUOK|1716|deoxyguanosine kinase##NM_144993|TET3|200424|tet methylcytosine dioxygenase 3##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)	0.0	0.0	
chr3	45156636	45156745	reg1011924.p2	4.234	+	AK312093 NM_003278 X64559 TSC_hg19_v1_chr3_+_45067794 BC011024 CU679874 CR541981 CR542009	-88888	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	-138930	+	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	-138953	+	AB527383 CU676820 TSC_hg19_v1_chr3_-_45187791	31096	-	TSC_hg19_v1_chr3_-_45187849 AY375452 AY026461	31161	-	TSC_hg19_v1_chr3_-_45187871 BC069254 AY167484 AY358779 AK314441 AF468010 AK026622	31185	-	AK312093|CLEC3B|7123|C-type lectin domain family 3, member B##NM_003278|CLEC3B|7123|C-type lectin domain family 3, member B##X64559|CLEC3B|7123|C-type lectin domain family 3, member B##BC011024|CLEC3B|7123|C-type lectin domain family 3, member B##CR541981|CLEC3B|7123|C-type lectin domain family 3, member B##CR542009|CLEC3B|7123|C-type lectin domain family 3, member B##BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##AY375452|CDCP1|64866|CUB domain containing protein 1##AY026461|CDCP1|64866|CUB domain containing protein 1##BC069254|CDCP1|64866|CUB domain containing protein 1##AY167484|CDCP1|64866|CUB domain containing protein 1##AY358779|CDCP1|64866|CUB domain containing protein 1##AK314441|CDCP1|64866|CUB domain containing protein 1##AF468010|CDCP1|64866|CUB domain containing protein 1##AK026622|CDCP1|64866|CUB domain containing protein 1	0.272776	0.0	
chr5	82886419	82886559	reg1009890.p2	4.234	+	NM_001126336 NM_001164097 NM_001164098 NM_004385 TSC_hg19_v1_chr5_+_82767562 U16306 U26555 X15998 AK307642 AB209491 BC050524 D32039	-118872	+	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	-513106	+	TSC_hg19_v1_chr5_-_82373255 NM_174909	-513227	-	AK313713 NM_001884 X17405 X78076 X78075	130445	-	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	793757	-	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	794175	-	NM_001126336|VCAN|1462|versican##NM_001164097|VCAN|1462|versican##NM_001164098|VCAN|1462|versican##NM_004385|VCAN|1462|versican##U16306|VCAN|1462|versican##U26555|VCAN|1462|versican##X15998|VCAN|1462|versican##AK307642|VCAN|1462|versican##AB209491|VCAN|1462|versican##BC050524|VCAN|1462|versican##D32039|VCAN|1462|versican##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_174909|TMEM167A|153339|transmembrane protein 167A##AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3	2.857754	0.0	denovo_WM_7:-42:0.439	denovo_WM_7:-43:0.296	denovo_WM_7:-60:0.249	denovo_WM_7:-61:0.213	denovo_WM_7:-80:0.214	denovo_WM_7:-81:0.249
chr9	109630203	109630383	reg1015763.p1	4.234	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	-4929	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-1173375	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-1173440	+	TSC_hg19_v1_chr9_+_109686439 CR749850	56176	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	415239	+	TSC_hg19_v1_chr9_+_110045559 AK125226 AK223479	415264	+	BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK125226|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK223479|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.998807	0.0	denovo_WM_7:69:0.740	denovo_WM_7:70:0.227
chr10	106098275	106098453	reg1004468.p1	4.233	+	AB051541 TSC_hg19_v1_chr10_-_106098200 AK129877	-175	-	BC070108 NM_033397	-4702	-	BC046194 NM_001191014 NM_001191015 BC023583 AK297522	-63460	+	TSC_hg19_v1_chr10_+_106113521 BC036225 NM_001008723 BX641120 AK093227 AX748000 BC109126	15177	+	AB028982 NM_014978	302494	+	BC117417 TSC_hg19_v1_chr10_+_106401047	302681	+	AB051541|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC070108|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##NM_033397|ITPRIP|85450|inositol 1,4,5-trisphosphate receptor interacting protein##BC046194|GSTO2|119391|glutathione S-transferase omega 2##NM_001191014|GSTO2|119391|glutathione S-transferase omega 2##NM_001191015|GSTO2|119391|glutathione S-transferase omega 2##BC023583|GSTO2|119391|glutathione S-transferase omega 2##AK297522|GSTO2|119391|glutathione S-transferase omega 2##BC036225|CCDC147|159686|coiled-coil domain containing 147##NM_001008723|CCDC147|159686|coiled-coil domain containing 147##BX641120|CCDC147|159686|coiled-coil domain containing 147##AK093227|CCDC147|159686|coiled-coil domain containing 147##BC109126|CCDC147|159686|coiled-coil domain containing 147##AB028982|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##NM_014978|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3	0.0	0.0	
chr10	93851883	93852012	reg1014548.p2	4.233	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-168255	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-168431	+	AK315427 BC025966 AK075410 NM_152429	-182727	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	151072	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	198889	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	199107	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.045297	0.0	
chr1	158734259	158734325	reg1016762.p1	4.233	+	BC140743 NM_001005184	-9735	+	NM_001005327	-46388	-	NM_001005279 BC137022	-63829	-	NM_001005185 BC146847	2189	-	NM_001005278	13132	-	TSC_hg19_v1_chr1_+_158801140 BC020715 BC032319 AK290392 AK313210 M81750 NM_002432	66844	+	BC140743|OR6K6|128371|olfactory receptor, family 6, subfamily K, member 6##NM_001005184|OR6K6|128371|olfactory receptor, family 6, subfamily K, member 6##NM_001005327|OR6K3|391114|olfactory receptor, family 6, subfamily K, member 3##NM_001005279|OR6K2|81448|olfactory receptor, family 6, subfamily K, member 2##BC137022|OR6K2|81448|olfactory receptor, family 6, subfamily K, member 2##NM_001005185|OR6N1|128372|olfactory receptor, family 6, subfamily N, member 1##BC146847|OR6N1|128372|olfactory receptor, family 6, subfamily N, member 1##NM_001005278|OR6N2|81442|olfactory receptor, family 6, subfamily N, member 2##BC020715|MNDA|4332|myeloid cell nuclear differentiation antigen##BC032319|MNDA|4332|myeloid cell nuclear differentiation antigen##AK290392|MNDA|4332|myeloid cell nuclear differentiation antigen##AK313210|MNDA|4332|myeloid cell nuclear differentiation antigen##M81750|MNDA|4332|myeloid cell nuclear differentiation antigen##NM_002432|MNDA|4332|myeloid cell nuclear differentiation antigen	0.0	0.0	
chr18	4369772	4369940	reg1014677.p2	4.233	+	AK294777 AK294717 NM_001242762 NM_001242763	-495129	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-495572	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-524526	-	AK304101 TSC_hg19_v1_chr18_-_4455255	85397	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	85414	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	827396	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.998264	0.0	
chr20	13698209	13698315	reg1000254.p1	4.233	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	-78698	-	NM_080826 TSC_hg19_v1_chr20_+_13202422	-495839	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-708621	+	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	67279	-	TSC_hg19_v1_chr20_+_13765698 NM_001039375 NM_024120 AK289781 AK091060 AX746757 BC073158 CU687252 BC005984	67491	+	BC035741 AK302170 NM_025229	272996	-	BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_001039375|C20orf7|79133|chromosome 20 open reading frame 7##NM_024120|C20orf7|79133|chromosome 20 open reading frame 7##AK289781|C20orf7|79133|chromosome 20 open reading frame 7##AK091060|C20orf7|79133|chromosome 20 open reading frame 7##BC073158|C20orf7|79133|chromosome 20 open reading frame 7##BC005984|C20orf7|79133|chromosome 20 open reading frame 7##BC035741|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##AK302170|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##NM_025229|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)	0.0	0.026342	
chr22	39099497	39099613	reg1010335.p2	4.233	+	CR456923 CU677177 CU013023 CU013311 CR456473 AK291827 BC015026 D31884 TSC_hg19_v1_chr22_-_39096285 NM_014876	-3331	-	AK312076 TSC_hg19_v1_chr22_+_39077979 CU013025 CU013313 DQ893045 DQ896289	-21574	+	TSC_hg19_v1_chr22_+_39077977 BC009363 CR456475	-21579	+	NM_004286 TSC_hg19_v1_chr22_+_39101925	2310	+	TSC_hg19_v1_chr22_+_39101984 EU831484 EU831571 BC014075 AB385030 CR456501 CU013098 CU013386 U87964	2472	+	AK304188 TSC_hg19_v1_chr22_-_39150957 AK295787	51428	-	CR456923|JOSD1|9929|Josephin domain containing 1##CU013023|JOSD1|9929|Josephin domain containing 1##CU013311|JOSD1|9929|Josephin domain containing 1##CR456473|JOSD1|9929|Josephin domain containing 1##AK291827|JOSD1|9929|Josephin domain containing 1##BC015026|JOSD1|9929|Josephin domain containing 1##D31884|JOSD1|9929|Josephin domain containing 1##NM_014876|JOSD1|9929|Josephin domain containing 1##AK312076|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013025|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013313|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ893045|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ896289|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##BC009363|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CR456475|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##NM_004286|GTPBP1|9567|GTP binding protein 1##EU831484|GTPBP1|9567|GTP binding protein 1##EU831571|GTPBP1|9567|GTP binding protein 1##BC014075|GTPBP1|9567|GTP binding protein 1##CR456501|GTPBP1|9567|GTP binding protein 1##CU013098|GTPBP1|9567|GTP binding protein 1##CU013386|GTPBP1|9567|GTP binding protein 1##U87964|GTPBP1|9567|GTP binding protein 1##AK304188|SUN2|25777|Sad1 and UNC84 domain containing 2##AK295787|SUN2|25777|Sad1 and UNC84 domain containing 2	0.409371	0.0	
chr3	175025803	175025871	reg1014420.p2	4.233	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-448747	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-867117	+	BC032555 NM_014932	-1909594	+	TSC_hg19_v1_chr3_-_176914267 BX648935	1888413	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	1889114	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	1889222	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	0.0	0.0	
chr4	40187467	40187586	reg1014516.p1	4.233	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-128994	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-207933	-	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	-208188	-	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	11115	+	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	149919	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	329058	-	AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47	0.0	0.0	
chr8	62381167	62381347	reg1009799.p1	4.233	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	-180707	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-789855	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-789969	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	221089	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	245761	-	TSC_hg19_v1_chr8_-_62627152 BC015518 BC025236 AK298577	245881	-	NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase##BC015518|ASPH|444|aspartate beta-hydroxylase##BC025236|ASPH|444|aspartate beta-hydroxylase##AK298577|ASPH|444|aspartate beta-hydroxylase	0.999282	0.0	
chrX	40730556	40730672	reg1013939.p1	4.233	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-135485	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-135634	-	TSC_hg19_v1_chrX_-_40594795 AB006651 AF304448 BC098377 NM_004229	-135826	-	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	214258	+	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	462036	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	462843	+	AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AB006651|MED14|9282|mediator complex subunit 14##AF304448|MED14|9282|mediator complex subunit 14##BC098377|MED14|9282|mediator complex subunit 14##NM_004229|MED14|9282|mediator complex subunit 14##NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	0.0	0.0	
chr15	96667283	96667390	reg1011873.p2	4.232	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-797017	-	NM_001159644 BC025708 BC111024 AK002037	-1768027	+	NM_001159643 NM_018349 AY656717 BC131527	-1825875	+	BC106083 NM_001145155 FM208183	201825	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	206641	+	AK316086 NM_001145156	208457	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.0	0.0	
chr7	102083640	102083723	reg1009950.p2	4.232	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	-9640	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	-9704	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-46839	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	21552	-	AK000020 TSC_hg19_v1_chr7_-_102105307 AK026097 AK222689 NM_017621	21636	-	TSC_hg19_v1_chr7_+_102105430 AL133057 BC030547 NM_152892 AK290967 AK313771	21727	+	AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK000020|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK026097|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AK222689|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##NM_017621|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##AL133057|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##BC030547|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##NM_152892|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK290967|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1##AK313771|LRWD1|222229|leucine-rich repeats and WD repeat domain containing 1	1.98551	0.0	denovo_WM_7:48:0.238	denovo_WM_7:49:0.238	denovo_WM_7:50:0.238	denovo_WM_7:51:0.238	denovo_WM_7:-94:0.423	denovo_WM_7:-95:0.474
chr10	13789187	13789289	reg1004246.p2	4.231	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-39549	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-160251	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-160295	+	TSC_hg19_v1_chr10_-_14050453 AK001072	261254	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	583612	-	TSC_hg19_v1_chr10_-_14646259 BC064407	857079	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.993966	0.0	denovo_WM_7:-53:0.695
chr14	34411043	34411223	reg1013164.p1	4.231	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1002643	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1612597	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1864627	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	9016	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	520354	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	597752	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	0.0	0.021602	
chr6	37129033	37129121	reg1014842.p2	4.231	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-155576	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-174807	-	AK022783 TSC_hg19_v1_chr6_-_36953950 AF176006 AF192559 BC125055 BC153873 NM_014341 BC110914	-175100	-	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	9045	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	96309	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	96522	+	BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK315067|MTCH1|23787|mitochondrial carrier 1##AK022783|MTCH1|23787|mitochondrial carrier 1##AF176006|MTCH1|23787|mitochondrial carrier 1##AF192559|MTCH1|23787|mitochondrial carrier 1##BC125055|MTCH1|23787|mitochondrial carrier 1##BC153873|MTCH1|23787|mitochondrial carrier 1##NM_014341|MTCH1|23787|mitochondrial carrier 1##BC110914|MTCH1|23787|mitochondrial carrier 1##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B	0.0	0.0	
chr20	43325793	43325907	reg1012387.p1	4.230	+	BC007678 TSC_hg19_v1_chr20_-_43280372 BC040226 NM_000022	-45475	-	AB528992 DQ892681 DQ895924 TSC_hg19_v1_chr20_-_43280341 X02994 AK223397	-45552	-	AK309209 TSC_hg19_v1_chr20_+_43211227	-114627	+	BC058074 TSC_hg19_v1_chr20_+_43343549 AK074695	17692	+	NM_003881 BC017782 TSC_hg19_v1_chr20_+_43343953	18070	+	TSC_hg19_v1_chr20_+_43344010 AK313853 BC064379 AF083500 AF074604 AY358915 CU687868	18167	+	BC007678|ADA|100|adenosine deaminase##BC040226|ADA|100|adenosine deaminase##NM_000022|ADA|100|adenosine deaminase##DQ892681|ADA|100|adenosine deaminase##DQ895924|ADA|100|adenosine deaminase##X02994|ADA|100|adenosine deaminase##AK223397|ADA|100|adenosine deaminase##AK309209|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC058074|WISP2|8839|WNT1 inducible signaling pathway protein 2##NM_003881|WISP2|8839|WNT1 inducible signaling pathway protein 2##BC017782|WISP2|8839|WNT1 inducible signaling pathway protein 2##AK313853|WISP2|8839|WNT1 inducible signaling pathway protein 2##BC064379|WISP2|8839|WNT1 inducible signaling pathway protein 2##AF083500|WISP2|8839|WNT1 inducible signaling pathway protein 2##AF074604|WISP2|8839|WNT1 inducible signaling pathway protein 2##AY358915|WISP2|8839|WNT1 inducible signaling pathway protein 2	0.990094	0.0	denovo_WM_7:54:0.239	denovo_WM_7:55:0.239	denovo_WM_7:56:0.239	denovo_WM_7:57:0.239
chr5	100237790	100237970	reg1012197.p1	4.230	+	AF529367 TSC_hg19_v1_chr5_+_99871306	-366610	+	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	-366807	+	BC054860 BC117134 NM_001270 AF006513	-1975652	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	1048	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	1394228	-	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	1596753	-	AF529367|FAM174A|345757|family with sequence similarity 174, member A##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1	0.0	0.215445	
chr11	69152264	69152350	reg1008274.p1	4.229	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	-90685	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-294781	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-335881	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	303549	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	303603	+	BC000076 BC001501 BC014078 TSC_hg19_v1_chr11_+_69455939 M73554 BC023620	303643	+	AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1##BC000076|CCND1|595|cyclin D1##BC001501|CCND1|595|cyclin D1##BC014078|CCND1|595|cyclin D1##M73554|CCND1|595|cyclin D1##BC023620|CCND1|595|cyclin D1	0.0	0.0	
chr1	219445672	219445760	reg1014458.p1	4.229	+	TSC_hg19_v1_chr1_+_219347219 AK123628 AK309689 AK291542 BC016711 AK129913 AY341430	-98474	+	TSC_hg19_v1_chr1_+_219347170 NM_138794	-98558	+	M19154 TSC_hg19_v1_chr1_+_218519634	-926111	+	BC036078 TSC_hg19_v1_chr1_-_220101540	655813	-	AB464233 TSC_hg19_v1_chr1_-_220101784	656075	-	TSC_hg19_v1_chr1_-_220101974 AY212919 AK090806 AX746624 NM_018713	656249	-	AK123628|LYPLAL1|127018|lysophospholipase-like 1##AK309689|LYPLAL1|127018|lysophospholipase-like 1##AK291542|LYPLAL1|127018|lysophospholipase-like 1##BC016711|LYPLAL1|127018|lysophospholipase-like 1##AK129913|LYPLAL1|127018|lysophospholipase-like 1##AY341430|LYPLAL1|127018|lysophospholipase-like 1##NM_138794|LYPLAL1|127018|lysophospholipase-like 1##M19154|TGFB2|7042|transforming growth factor, beta 2##BC036078|SLC30A10|55532|solute carrier family 30, member 10##AY212919|SLC30A10|55532|solute carrier family 30, member 10##AK090806|SLC30A10|55532|solute carrier family 30, member 10##NM_018713|SLC30A10|55532|solute carrier family 30, member 10	0.0	0.0	
chr6	46185558	46185720	reg1014025.p1	4.229	+	AK312790 TSC_hg19_v1_chr6_-_46138695 BC027615 AY358514 AK292842 AK295192 BX647968 NM_021572	-46973	-	TSC_hg19_v1_chr6_+_46097818 AK291276 AB020686	-87775	+	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	-87925	+	CU691584 DQ891658 DQ894845 AK312392 TSC_hg19_v1_chr6_-_46293389	107664	-	D83407 TSC_hg19_v1_chr6_-_46293410 BC038509	107768	-	NM_005822	107989	-	AK312790|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##BC027615|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AY358514|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AK292842|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AK295192|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##BX647968|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##NM_021572|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AK291276|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##AB020686|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##DQ891658|RCAN2|10231|regulator of calcineurin 2##DQ894845|RCAN2|10231|regulator of calcineurin 2##AK312392|RCAN2|10231|regulator of calcineurin 2##D83407|RCAN2|10231|regulator of calcineurin 2##BC038509|RCAN2|10231|regulator of calcineurin 2##NM_005822|RCAN2|10231|regulator of calcineurin 2	0.0	0.0	
chr7	151216906	151217025	reg1017182.p1	4.229	+	TSC_hg19_v1_chr7_-_151216769 BC066307	-196	-	TSC_hg19_v1_chr7_-_151216740 AK289370 AF148645	-247	-	AB528681 AF493921 BT006958 CU688134 D78132 Z29677 TSC_hg19_v1_chr7_-_151216661	-336	-	TSC_hg19_v1_chr7_-_151216982 BC107705 AK125446 BC016155 NM_005614	20	-	TSC_hg19_v1_chr7_-_151329284 BT007127 BC020540 AB025580 AF087875 AK314646 AK001887 NM_024429	112315	-	BC068598 TSC_hg19_v1_chr7_-_151511929 NM_001040633	294975	-	BC066307|RHEB|6009|Ras homolog enriched in brain##AK289370|RHEB|6009|Ras homolog enriched in brain##AF148645|RHEB|6009|Ras homolog enriched in brain##AF493921|RHEB|6009|Ras homolog enriched in brain##BT006958|RHEB|6009|Ras homolog enriched in brain##D78132|RHEB|6009|Ras homolog enriched in brain##Z29677|RHEB|6009|Ras homolog enriched in brain##BC107705|RHEB|6009|Ras homolog enriched in brain##AK125446|RHEB|6009|Ras homolog enriched in brain##BC016155|RHEB|6009|Ras homolog enriched in brain##NM_005614|RHEB|6009|Ras homolog enriched in brain##BT007127|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC020540|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AB025580|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AF087875|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK314646|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##AK001887|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_024429|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##BC068598|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit##NM_001040633|PRKAG2|51422|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	0.0	0.0	
chr9	134595017	134595197	reg1003487.p2	4.229	+	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	-9905	-	AK057848 TSC_hg19_v1_chr9_-_134406625 BC091495 BC015547 AK022317 NM_001135954 NM_031432	-188457	-	TSC_hg19_v1_chr9_-_134406578 AF254133 CR457281 CU677347 AF237290 AF125106 AK295471 AK307475	-188560	-	D21239 NM_005312	17817	-	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	20183	-	Z36848 AF104252 AF230382 DQ099387 AB527898 EU446747 TSC_hg19_v1_chr9_-_134955238 BC064608 BC070331	360042	-	BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##AK057848|UCK1|83549|uridine-cytidine kinase 1##BC091495|UCK1|83549|uridine-cytidine kinase 1##BC015547|UCK1|83549|uridine-cytidine kinase 1##AK022317|UCK1|83549|uridine-cytidine kinase 1##NM_001135954|UCK1|83549|uridine-cytidine kinase 1##NM_031432|UCK1|83549|uridine-cytidine kinase 1##AF254133|UCK1|83549|uridine-cytidine kinase 1##CR457281|UCK1|83549|uridine-cytidine kinase 1##AF237290|UCK1|83549|uridine-cytidine kinase 1##AF125106|UCK1|83549|uridine-cytidine kinase 1##AK295471|UCK1|83549|uridine-cytidine kinase 1##AK307475|UCK1|83549|uridine-cytidine kinase 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##Z36848|MED27|9442|mediator complex subunit 27##AF104252|MED27|9442|mediator complex subunit 27##AF230382|MED27|9442|mediator complex subunit 27##DQ099387|MED27|9442|mediator complex subunit 27##EU446747|MED27|9442|mediator complex subunit 27##BC064608|MED27|9442|mediator complex subunit 27##BC070331|MED27|9442|mediator complex subunit 27	0.0	0.0	
chr9	35815799	35815913	reg1006865.p2	4.229	+	TSC_hg19_v1_chr9_-_35815040 NM_032593	-801	-	TSC_hg19_v1_chr9_-_35815018 AK222582 AF356515 AY033094 AF356875 BC047737 AF085236	-844	-	DQ890798 EU176503 BC019247 AK302313 NM_001039592 NM_172312 S83157 U12978	-3656	-	BC146808 BX648702 NM_001012446	12879	-	TSC_hg19_v1_chr9_+_35829262 NM_016446 BC043384 NM_001042589 AF188239	13387	+	TSC_hg19_v1_chr9_+_35829375 BC064951 NM_001042590 BC082765	13622	+	NM_032593|HINT2|84681|histidine triad nucleotide binding protein 2##AK222582|HINT2|84681|histidine triad nucleotide binding protein 2##AF356515|HINT2|84681|histidine triad nucleotide binding protein 2##AY033094|HINT2|84681|histidine triad nucleotide binding protein 2##AF356875|HINT2|84681|histidine triad nucleotide binding protein 2##BC047737|HINT2|84681|histidine triad nucleotide binding protein 2##AF085236|HINT2|84681|histidine triad nucleotide binding protein 2##DQ890798|SPAG8|26206|sperm associated antigen 8##EU176503|SPAG8|26206|sperm associated antigen 8##BC019247|SPAG8|26206|sperm associated antigen 8##AK302313|SPAG8|26206|sperm associated antigen 8##NM_001039592|SPAG8|26206|sperm associated antigen 8##NM_172312|SPAG8|26206|sperm associated antigen 8##S83157|SPAG8|26206|sperm associated antigen 8##U12978|SPAG8|26206|sperm associated antigen 8##BC146808|C9orf128|392307|chromosome 9 open reading frame 128##BX648702|C9orf128|392307|chromosome 9 open reading frame 128##NM_001012446|C9orf128|392307|chromosome 9 open reading frame 128##NM_016446|TMEM8B|51754|transmembrane protein 8B##BC043384|TMEM8B|51754|transmembrane protein 8B##NM_001042589|TMEM8B|51754|transmembrane protein 8B##AF188239|TMEM8B|51754|transmembrane protein 8B##BC064951|TMEM8B|51754|transmembrane protein 8B##NM_001042590|TMEM8B|51754|transmembrane protein 8B##BC082765|TMEM8B|51754|transmembrane protein 8B	2.180613	0.0	denovo_WM_7:-58:0.303	denovo_WM_7:79:0.806	denovo_WM_7:94:0.786
chr12	40562619	40562782	reg1005231.p1	4.228	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-62828	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-63011	-	BC038754 NM_001031748 BC048120 AK097445	-542705	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	56159	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	523582	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	1019508	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.385379	0.0	
chr14	59421706	59421873	reg1003932.p1	4.228	+	TSC_hg19_v1_chr14_+_59104741 NM_001079520 NM_016651	-317043	+	AK302579 NM_001244193 AK310356 AK302718	-515363	+	NM_014749 BC066647	-527058	+	TSC_hg19_v1_chr14_+_59655450 BX648383 BC064999 NM_014992 BC038428 AK291790 AK021890 BX247986	233615	+	TSC_hg19_v1_chr14_-_59931852 DQ893361 DQ896680 AY288418 M76676	510133	-	TSC_hg19_v1_chr14_-_59932051 BC032831 NM_022571	510267	-	NM_001079520|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##NM_016651|DACT1|51339|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)##AK302579|KIAA0586|9786|KIAA0586##NM_001244193|KIAA0586|9786|KIAA0586##AK310356|KIAA0586|9786|KIAA0586##AK302718|KIAA0586|9786|KIAA0586##NM_014749|KIAA0586|9786|KIAA0586##BC066647|KIAA0586|9786|KIAA0586##BC064999|DAAM1|23002|dishevelled associated activator of morphogenesis 1##NM_014992|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BC038428|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK291790|DAAM1|23002|dishevelled associated activator of morphogenesis 1##AK021890|DAAM1|23002|dishevelled associated activator of morphogenesis 1##BX247986|DAAM1|23002|dishevelled associated activator of morphogenesis 1##DQ893361|GPR135|64582|G protein-coupled receptor 135##DQ896680|GPR135|64582|G protein-coupled receptor 135##AY288418|GPR135|64582|G protein-coupled receptor 135##M76676|GPR135|64582|G protein-coupled receptor 135##BC032831|GPR135|64582|G protein-coupled receptor 135##NM_022571|GPR135|64582|G protein-coupled receptor 135	0.03087	0.0	
chr17	36209014	36209187	reg1010915.p1	4.228	+	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	-104049	-	AB528419 BT007126 CR536572 DQ891528 EU176615 TSC_hg19_v1_chr17_-_36104898	-104214	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	-205623	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	74893	+	BC033670 BC047739 AL136860 AK301823 BC071680 BC078140 AK302064 AK313329 NM_001123391 NM_032258	139525	-	BC067792 TSC_hg19_v1_chr17_-_36413224	204137	-	HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##BT007126|HNF1B|6928|HNF1 homeobox B##CR536572|HNF1B|6928|HNF1 homeobox B##DQ891528|HNF1B|6928|HNF1 homeobox B##EU176615|HNF1B|6928|HNF1 homeobox B##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##AK302064|TBC1D3|729873|TBC1 domain family, member 3##AK313329|TBC1D3|729873|TBC1 domain family, member 3##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##BC067792|LOC440434|440434|aminopeptidase puromycin sensitive pseudogene	0.987512	0.0	denovo_WM_7:67:0.456	denovo_WM_7:68:0.531
chr3	127303293	127303464	reg1007929.p2	4.228	+	AB037108 NM_016372	-4099	-	AK097460 BC137154 BC137155 TSC_hg19_v1_chr3_+_126912016	-391384	+	AB385178 NM_032242 X87832	-595938	+	TSC_hg19_v1_chr3_-_127309338 BC017058	5966	-	BC050711 NM_001136053 AF289568 TSC_hg19_v1_chr3_-_127309565 NM_001142646	6155	-	TSC_hg19_v1_chr3_+_127317252 AK128291 AK299934 AK309335 NM_004526 BC014272 BC007670	13862	+	AB037108|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_016372|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AK097460|C3orf56|285311|chromosome 3 open reading frame 56##BC137154|C3orf56|285311|chromosome 3 open reading frame 56##BC137155|C3orf56|285311|chromosome 3 open reading frame 56##NM_032242|PLXNA1|5361|plexin A1##X87832|PLXNA1|5361|plexin A1##BC017058|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##BC050711|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001136053|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AF289568|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001142646|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AK128291|MCM2|4171|minichromosome maintenance complex component 2##AK299934|MCM2|4171|minichromosome maintenance complex component 2##AK309335|MCM2|4171|minichromosome maintenance complex component 2##NM_004526|MCM2|4171|minichromosome maintenance complex component 2##BC014272|MCM2|4171|minichromosome maintenance complex component 2##BC007670|MCM2|4171|minichromosome maintenance complex component 2	1.995004	0.0	denovo_WM_7:-61:0.346	denovo_WM_7:-62:0.263	denovo_WM_7:-78:0.268	denovo_WM_7:-79:0.351
chr3	169667262	169667369	reg1013258.p1	4.228	+	BX648991 BX648534 BX648989 BX537903 NM_182610	-37895	+	HQ258307 BC117401 BC143569 BC143582 AY358138 AK097338 NM_024727 AK026912	-79658	-	NM_001080460	-127606	+	TSC_hg19_v1_chr3_+_169684598 NM_003262 AK294504 BC003677 BC007040 BC012035 BX648539 D87127 U93239 EU832302 EU832386	17273	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	88439	+	TSC_hg19_v1_chr3_+_169755782 BC000181	88475	+	BX648991|SAMD7|344658|sterile alpha motif domain containing 7##BX648534|SAMD7|344658|sterile alpha motif domain containing 7##BX648989|SAMD7|344658|sterile alpha motif domain containing 7##BX537903|SAMD7|344658|sterile alpha motif domain containing 7##NM_182610|SAMD7|344658|sterile alpha motif domain containing 7##HQ258307|LRRC31|79782|leucine rich repeat containing 31##BC117401|LRRC31|79782|leucine rich repeat containing 31##BC143569|LRRC31|79782|leucine rich repeat containing 31##BC143582|LRRC31|79782|leucine rich repeat containing 31##AY358138|LRRC31|79782|leucine rich repeat containing 31##AK097338|LRRC31|79782|leucine rich repeat containing 31##NM_024727|LRRC31|79782|leucine rich repeat containing 31##AK026912|LRRC31|79782|leucine rich repeat containing 31##NM_001080460|LRRIQ4|344657|leucine-rich repeats and IQ motif containing 4##NM_003262|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC003677|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC007040|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC012035|SEC62|7095|SEC62 homolog (S. cerevisiae)##BX648539|SEC62|7095|SEC62 homolog (S. cerevisiae)##D87127|SEC62|7095|SEC62 homolog (S. cerevisiae)##U93239|SEC62|7095|SEC62 homolog (S. cerevisiae)##EU832302|SEC62|7095|SEC62 homolog (S. cerevisiae)##EU832386|SEC62|7095|SEC62 homolog (S. cerevisiae)##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160	1.046658	0.0	denovo_WM_7:-34:0.853
chr3	169762937	169763028	reg1011687.p1	4.228	+	TSC_hg19_v1_chr3_+_169755984 AK311293	-7030	+	TSC_hg19_v1_chr3_+_169755782 BC000181	-7192	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	-7228	+	TSC_hg19_v1_chr3_-_169899511 BC112944 BC131773 BX647868 EF560717 AF380154 AJ320486 AK023029 BC131772	136463	-	TSC_hg19_v1_chr3_-_169899522 AK022791 BC022325 AK300151 AK302371 BC070164 AK304411 NM_024947	136546	-	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	177235	+	AK311293|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC112944|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131773|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BX647868|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##EF560717|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AF380154|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AJ320486|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK023029|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC131772|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK022791|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC022325|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK300151|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##BC070164|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##AK304411|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_024947|PHC3|80012|polyhomeotic homolog 3 (Drosophila)##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota	0.0	0.0	
chr3	35109377	35109489	reg1012860.p1	4.228	+	TSC_hg19_v1_chr3_+_33840125 AF250394 GQ131806 AB384596 CU676494 CU686637 BT007367	-1269262	+	TSC_hg19_v1_chr3_+_33840120 AF151793 BC020066	-1269326	+	TSC_hg19_v1_chr3_+_33840081 BC068454 AF349951	-1269350	+	TSC_hg19_v1_chr3_+_35681016 BC041385 AK057559	571668	+	BC051828 NM_016300	574415	+	AK055064 NM_001025068 NM_001025069 AK289868 AF112220 AK289649 AK294484	611763	+	AF250394|PDCD6IP|10015|programmed cell death 6 interacting protein##GQ131806|PDCD6IP|10015|programmed cell death 6 interacting protein##BT007367|PDCD6IP|10015|programmed cell death 6 interacting protein##AF151793|PDCD6IP|10015|programmed cell death 6 interacting protein##BC020066|PDCD6IP|10015|programmed cell death 6 interacting protein##BC068454|PDCD6IP|10015|programmed cell death 6 interacting protein##AF349951|PDCD6IP|10015|programmed cell death 6 interacting protein##BC041385|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK057559|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC051828|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_016300|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK055064|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025068|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025069|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289868|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AF112220|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289649|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK294484|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa	0.040722	0.0	
chr5	116099369	116099461	reg1001379.p2	4.228	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-188901	-	TSC_hg19_v1_chr5_+_115898220 D28352	-201191	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-678694	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2224823	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2307396	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2307750	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.075755	0.0	
chr11	65207173	65207239	reg1011029.p2	4.227	+	TSC_hg19_v1_chr11_+_65193527 AF080092 AF508303	-13683	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	-14806	+	TSC_hg19_v1_chr11_+_65190274 AK026198	-16928	+	TSC_hg19_v1_chr11_+_65265158 EF177381	57997	+	TSC_hg19_v1_chr11_+_65266515 BC025986 BX538238 FJ209305	59295	+	TSC_hg19_v1_chr11_+_65266869 BC104662	59593	+	AF080092|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF508303|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##EF177381|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BC025986|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BX538238|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	0.996726	0.0	denovo_WM_7:-56:0.527	denovo_WM_7:-57:0.470
chr1	41706398	41706578	reg1009952.p2	4.227	+	BC021252 NM_001172221	-77800	-	BC009752 NM_001031694	-79414	-	AK301497 AK299383 NM_001172222	-80917	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	1297	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	1348	-	BC034393 X55177 M65199 NM_001956	243831	-	BC021252|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172221|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC009752|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001031694|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK301497|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK299383|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172222|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2	0.998128	0.0	denovo_WM_7:-60:0.409	denovo_WM_7:-61:0.409
chr17	63096029	63096140	reg1014378.p1	4.227	+	TSC_hg19_v1_chr17_-_63052903 AK301699 NM_006572	-43183	-	BC011925 TSC_hg19_v1_chr17_-_63052851	-43251	-	TSC_hg19_v1_chr17_-_63052756 L22075 BC036756	-43324	-	NM_001081955 NM_001165933 NM_003835 TSC_hg19_v1_chr17_+_63133479	37386	+	TSC_hg19_v1_chr17_+_63133501 AK309061 AK290535 BC022504 AK301719 AF071476 AK289876 AF493933 AY585191	37495	+	BC006295 TSC_hg19_v1_chr17_-_63556453	460391	-	AK301699|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##NM_006572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##L22075|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC036756|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##NM_001081955|RGS9|8787|regulator of G-protein signaling 9##NM_001165933|RGS9|8787|regulator of G-protein signaling 9##NM_003835|RGS9|8787|regulator of G-protein signaling 9##AK309061|RGS9|8787|regulator of G-protein signaling 9##AK290535|RGS9|8787|regulator of G-protein signaling 9##BC022504|RGS9|8787|regulator of G-protein signaling 9##AK301719|RGS9|8787|regulator of G-protein signaling 9##AF071476|RGS9|8787|regulator of G-protein signaling 9##AK289876|RGS9|8787|regulator of G-protein signaling 9##AF493933|RGS9|8787|regulator of G-protein signaling 9##AY585191|RGS9|8787|regulator of G-protein signaling 9##BC006295|AXIN2|8313|axin 2	0.0	0.0	
chr19	18414577	18414665	reg1011251.p2	4.227	+	TSC_hg19_v1_chr19_-_18392451 X56681	-22153	-	TSC_hg19_v1_chr19_-_18392431 BC052571 AK223630 NM_005354	-22197	-	BC169273 TSC_hg19_v1_chr19_-_18392160 X51346	-22516	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	19266	-	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	19345	-	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	36786	+	X56681|JUND|3727|jun D proto-oncogene##AK223630|JUND|3727|jun D proto-oncogene##NM_005354|JUND|3727|jun D proto-oncogene##BC169273|JUND|3727|jun D proto-oncogene##X51346|JUND|3727|jun D proto-oncogene##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I	0.957404	0.0	denovo_WM_7:36:0.326	denovo_WM_7:37:0.581
chr19	4799947	4800085	reg1010705.p1	4.227	+	TSC_hg19_v1_chr19_+_4791757 AK074232 BC004988 AY356352 EU446817 AB384759 AJ311359	-8204	+	AK126532 AK315554 TSC_hg19_v1_chr19_+_4791756	-8260	+	NM_018708 TSC_hg19_v1_chr19_+_4791745	-8280	+	AF070530 TSC_hg19_v1_chr19_-_4817612	17542	-	TSC_hg19_v1_chr19_-_4831725 BC035331 NM_182919	31709	-	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	67629	-	AK074232|FEM1A|55527|fem-1 homolog a (C. elegans)##BC004988|FEM1A|55527|fem-1 homolog a (C. elegans)##AY356352|FEM1A|55527|fem-1 homolog a (C. elegans)##EU446817|FEM1A|55527|fem-1 homolog a (C. elegans)##AJ311359|FEM1A|55527|fem-1 homolog a (C. elegans)##AK126532|FEM1A|55527|fem-1 homolog a (C. elegans)##AK315554|FEM1A|55527|fem-1 homolog a (C. elegans)##NM_018708|FEM1A|55527|fem-1 homolog a (C. elegans)##AF070530|TICAM1|148022|toll-like receptor adaptor molecule 1##BC035331|TICAM1|148022|toll-like receptor adaptor molecule 1##NM_182919|TICAM1|148022|toll-like receptor adaptor molecule 1##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3	1.983248	0.0	denovo_WM_7:-76:0.840	denovo_WM_7:-91:0.853
chr6	36325971	36326151	reg1014505.p1	4.227	+	BC140873 BX648558 NM_001010903 TSC_hg19_v1_chr6_-_36304663	-21436	-	AM182887 FJ457781 NM_001145717	-87825	+	AK096074 NM_173676 BC103905 BC103906 BC103907 NM_001145716	-115100	+	AF175387 AF218365 AF116508 AF116509 AF116510 AF218235 AF218366 BC035853 AK301011 AF147782 AK223424 AJ276205 AK026144 NM_001207038 AK303829 NM_001207035 NM_001207036 NM_001207037 NM_001207039 NM_001207040 NM_001207041 NM_016135	29398	-	BC031105 NM_152990	84604	-	AY305862 NM_173562 TSC_hg19_v1_chr6_+_36410797 AK295717 AK316456	84609	+	BC140873|C6orf222|389384|chromosome 6 open reading frame 222##BX648558|C6orf222|389384|chromosome 6 open reading frame 222##NM_001010903|C6orf222|389384|chromosome 6 open reading frame 222##AM182887|PNPLA1|285848|patatin-like phospholipase domain containing 1##FJ457781|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145717|PNPLA1|285848|patatin-like phospholipase domain containing 1##AK096074|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_173676|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103905|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103906|PNPLA1|285848|patatin-like phospholipase domain containing 1##BC103907|PNPLA1|285848|patatin-like phospholipase domain containing 1##NM_001145716|PNPLA1|285848|patatin-like phospholipase domain containing 1##AF175387|ETV7|51513|ets variant 7##AF218365|ETV7|51513|ets variant 7##AF116508|ETV7|51513|ets variant 7##AF116509|ETV7|51513|ets variant 7##AF116510|ETV7|51513|ets variant 7##AF218235|ETV7|51513|ets variant 7##AF218366|ETV7|51513|ets variant 7##BC035853|ETV7|51513|ets variant 7##AK301011|ETV7|51513|ets variant 7##AF147782|ETV7|51513|ets variant 7##AK223424|ETV7|51513|ets variant 7##AJ276205|ETV7|51513|ets variant 7##AK026144|ETV7|51513|ets variant 7##NM_001207038|ETV7|51513|ets variant 7##AK303829|ETV7|51513|ets variant 7##NM_001207035|ETV7|51513|ets variant 7##NM_001207036|ETV7|51513|ets variant 7##NM_001207037|ETV7|51513|ets variant 7##NM_001207039|ETV7|51513|ets variant 7##NM_001207040|ETV7|51513|ets variant 7##NM_001207041|ETV7|51513|ets variant 7##NM_016135|ETV7|51513|ets variant 7##BC031105|PXT1|222659|peroxisomal, testis specific 1##NM_152990|PXT1|222659|peroxisomal, testis specific 1##AY305862|KCTD20|222658|potassium channel tetramerisation domain containing 20##NM_173562|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK295717|KCTD20|222658|potassium channel tetramerisation domain containing 20##AK316456|KCTD20|222658|potassium channel tetramerisation domain containing 20	0.0	0.0	
chr7	33079133	33079313	reg1011671.p2	4.227	+	TSC_hg19_v1_chr7_+_32997051 NM_007270 AK075331 AK128597 AK300328 AK293954 AK294266 BC101723 BC112053 AF089745	-82071	+	AF274938 TSC_hg19_v1_chr7_-_32982789 BC050570 BC036907	-96519	-	TSC_hg19_v1_chr7_-_32931481 NM_015483	-147772	-	BC015856 NM_001166118 NM_016489	1296	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	23099	-	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	69754	-	NM_007270|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK075331|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK128597|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK300328|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK293954|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK294266|FKBP9|11328|FK506 binding protein 9, 63 kDa##BC101723|FKBP9|11328|FK506 binding protein 9, 63 kDa##BC112053|FKBP9|11328|FK506 binding protein 9, 63 kDa##AF089745|FKBP9|11328|FK506 binding protein 9, 63 kDa##AF274938|RP9P|441212|retinitis pigmentosa 9 pseudogene##BC050570|RP9P|441212|retinitis pigmentosa 9 pseudogene##BC036907|RP9P|441212|retinitis pigmentosa 9 pseudogene##NM_015483|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC015856|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001166118|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_016489|NT5C3|51251|5'-nucleotidase, cytosolic III##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)	0.984689	0.0	denovo_WM_7:-40:0.808
chr7	99797706	99797809	reg1011341.p1	4.227	+	TSC_hg19_v1_chr7_+_99775540 NM_012447 AK292394 BC146806 AK302693 BC047490 BC028684 AL833816 BC140932	-22194	+	AJ007798 TSC_hg19_v1_chr7_+_99775380	-22393	+	AB587513 AM392909 CU693354 DQ893325 DQ896641 AL834418 TSC_hg19_v1_chr7_-_99774981 AB209144 AK096281 BC027972 NM_152742 AY093588	-22830	-	NM_024070	19113	+	BC065200 AK290510 TSC_hg19_v1_chr7_-_99869856 BC044886 BC090867 BC033723 BC053367 NM_178831	72073	-	BC056606 NM_001004351	107567	+	NM_012447|STAG3|10734|stromal antigen 3##AK292394|STAG3|10734|stromal antigen 3##BC146806|STAG3|10734|stromal antigen 3##AK302693|STAG3|10734|stromal antigen 3##BC047490|STAG3|10734|stromal antigen 3##BC028684|STAG3|10734|stromal antigen 3##AL833816|STAG3|10734|stromal antigen 3##BC140932|STAG3|10734|stromal antigen 3##AJ007798|STAG3|10734|stromal antigen 3##AM392909|GPC2|221914|glypican 2##DQ893325|GPC2|221914|glypican 2##DQ896641|GPC2|221914|glypican 2##AL834418|GPC2|221914|glypican 2##AK096281|GPC2|221914|glypican 2##BC027972|GPC2|221914|glypican 2##NM_152742|GPC2|221914|glypican 2##AY093588|GPC2|221914|glypican 2##NM_024070|PVRIG|79037|poliovirus receptor related immunoglobulin domain containing##BC065200|GATS|352954|GATS, stromal antigen 3 opposite strand##AK290510|GATS|352954|GATS, stromal antigen 3 opposite strand##BC044886|GATS|352954|GATS, stromal antigen 3 opposite strand##BC090867|GATS|352954|GATS, stromal antigen 3 opposite strand##BC033723|GATS|352954|GATS, stromal antigen 3 opposite strand##BC053367|GATS|352954|GATS, stromal antigen 3 opposite strand##NM_178831|GATS|352954|GATS, stromal antigen 3 opposite strand##BC056606|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)##NM_001004351|SPDYE3|441272|speedy homolog E3 (Xenopus laevis)	0.997001	0.0	denovo_WM_7:-58:0.313	denovo_WM_7:-59:0.313	denovo_WM_7:-60:0.313
chr10	134448062	134448242	reg1012665.p1	4.226	+	TSC_hg19_v1_chr10_+_134351305 BC096280 BC096281 BC117515 AF273055 NM_005539	-96840	+	TSC_hg19_v1_chr10_+_134258657 BC030794 NM_173541	-189469	+	TSC_hg19_v1_chr10_+_134210703 NM_001098637 NM_138499 BC068574	-237443	+	TSC_hg19_v1_chr10_-_134599477 BC101635 BC104823 NM_177400	151354	-	CU692234 BC044661 AK098820 TSC_hg19_v1_chr10_-_134756065 NM_001200049 NM_173572	307886	-	NM_001083909 TSC_hg19_v1_chr10_+_134901429 AK124728	453305	+	BC096280|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC096281|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC117515|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##AF273055|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##NM_005539|INPP5A|3632|inositol polyphosphate-5-phosphatase, 40kDa##BC030794|C10orf91|170393|chromosome 10 open reading frame 91##NM_173541|C10orf91|170393|chromosome 10 open reading frame 91##NM_001098637|PWWP2B|170394|PWWP domain containing 2B##NM_138499|PWWP2B|170394|PWWP domain containing 2B##BC068574|PWWP2B|170394|PWWP domain containing 2B##BC101635|NKX6-2|84504|NK6 homeobox 2##BC104823|NKX6-2|84504|NK6 homeobox 2##NM_177400|NKX6-2|84504|NK6 homeobox 2##BC044661|TTC40|54777|tetratricopeptide repeat domain 40##AK098820|TTC40|54777|tetratricopeptide repeat domain 40##NM_001200049|TTC40|54777|tetratricopeptide repeat domain 40##NM_173572|TTC40|54777|tetratricopeptide repeat domain 40##NM_001083909|GPR123|84435|G protein-coupled receptor 123##AK124728|GPR123|84435|G protein-coupled receptor 123	0.0	0.0	
chr11	88069290	88069469	reg1012046.p1	4.226	+	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	-160787	-	AK024853 TSC_hg19_v1_chr11_+_87032449	-1036937	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-1320401	+	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	1488	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	1523	-	TSC_hg19_v1_chr11_-_88070905 BX537913 NM_001114173 NM_001814 NM_148170	1552	-	BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AK024853|TMEM135|65084|transmembrane protein 135##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C##BX537913|CTSC|1075|cathepsin C##NM_001114173|CTSC|1075|cathepsin C##NM_001814|CTSC|1075|cathepsin C##NM_148170|CTSC|1075|cathepsin C	0.998892	0.0	
chr1	23918871	23918990	reg1013766.p2	4.226	+	NM_002167 X69111	-32646	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-32946	-	L22846 NM_004091	-61219	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	99350	+	TSC_hg19_v1_chr1_+_24018295 BC018970	99369	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	150974	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.998822	0.0	denovo_WM_7:31:0.219	denovo_WM_7:32:0.749
chr15	45023185	45023365	reg1014837.p1	4.226	+	BC031266 TSC_hg19_v1_chr15_+_45021331	-1944	+	AK311550 TSC_hg19_v1_chr15_+_45021275 DQ232883	-2022	+	TSC_hg19_v1_chr15_+_45003710 NM_004048 AK303560 AK315776 S82297 S82300 S54761 BC032589 BC064910 X07621 AY007153 AB021288 AB463439 AY187687 CR457066 DQ839493 DQ839494 DQ884406 DQ890551 DQ893711 V00567	-19554	+	NM_080745 NM_182985	5284	+	BC029537 NM_152448 DQ890983 DQ894158	225633	+	NM_003104 TSC_hg19_v1_chr15_+_45315395 AK312444 U07361 L29008 BC021085 AK295656 AK296574 AK309672 BC025295 AB529056 DQ892769 DQ896016	292115	+	BC031266|TRIM69|140691|tripartite motif containing 69##DQ232883|TRIM69|140691|tripartite motif containing 69##NM_004048|B2M|567|beta-2-microglobulin##AK303560|B2M|567|beta-2-microglobulin##AK315776|B2M|567|beta-2-microglobulin##S82297|B2M|567|beta-2-microglobulin##S82300|B2M|567|beta-2-microglobulin##S54761|B2M|567|beta-2-microglobulin##BC032589|B2M|567|beta-2-microglobulin##BC064910|B2M|567|beta-2-microglobulin##X07621|B2M|567|beta-2-microglobulin##AY007153|B2M|567|beta-2-microglobulin##AB021288|B2M|567|beta-2-microglobulin##AY187687|B2M|567|beta-2-microglobulin##CR457066|B2M|567|beta-2-microglobulin##DQ839493|B2M|567|beta-2-microglobulin##DQ839494|B2M|567|beta-2-microglobulin##DQ884406|B2M|567|beta-2-microglobulin##DQ890551|B2M|567|beta-2-microglobulin##DQ893711|B2M|567|beta-2-microglobulin##V00567|B2M|567|beta-2-microglobulin##NM_080745|TRIM69|140691|tripartite motif containing 69##NM_182985|TRIM69|140691|tripartite motif containing 69##BC029537|C15orf43|145645|chromosome 15 open reading frame 43##NM_152448|C15orf43|145645|chromosome 15 open reading frame 43##DQ890983|C15orf43|145645|chromosome 15 open reading frame 43##DQ894158|C15orf43|145645|chromosome 15 open reading frame 43##NM_003104|SORD|6652|sorbitol dehydrogenase##AK312444|SORD|6652|sorbitol dehydrogenase##U07361|SORD|6652|sorbitol dehydrogenase##L29008|SORD|6652|sorbitol dehydrogenase##BC021085|SORD|6652|sorbitol dehydrogenase##AK296574|SORD|6652|sorbitol dehydrogenase##AK309672|SORD|6652|sorbitol dehydrogenase##BC025295|SORD|6652|sorbitol dehydrogenase##DQ892769|SORD|6652|sorbitol dehydrogenase##DQ896016|SORD|6652|sorbitol dehydrogenase	0.997076	0.0	denovo_WM_7:-14:0.950
chr10	102027351	102027531	reg1007337.p2	4.225	+	AL832515 CU679081 AK023984 BC008746 AK001860 AK225590 TSC_hg19_v1_chr10_-_102027422 AK295303 AK097895 NM_018294	-55	-	TSC_hg19_v1_chr10_-_101989343 NM_001278 AF080157	-38083	-	U22512 AF012890 AB590489 BC092514 TSC_hg19_v1_chr10_-_101989331 AF009225 AB209028	-38175	-	BC020494 AY278457 AK054697 NM_001001342	18589	-	AY531265 AB463442 TSC_hg19_v1_chr10_-_102046438 AB593084 AK298969 NM_173809	18997	-	AF073481 NM_001253837 NM_016112	62801	-	AL832515|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK023984|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC008746|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK001860|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK225590|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK295303|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK097895|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##NM_018294|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##NM_001278|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF080157|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##U22512|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF012890|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC092514|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF009225|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AB209028|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC020494|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY278457|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK054697|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_001001342|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY531265|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AB593084|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK298969|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_173809|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AF073481|PKD2L1|9033|polycystic kidney disease 2-like 1##NM_001253837|PKD2L1|9033|polycystic kidney disease 2-like 1##NM_016112|PKD2L1|9033|polycystic kidney disease 2-like 1	0.0	0.0	
chr14	71962779	71962868	reg1010491.p2	4.225	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-588372	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-588690	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-687014	-	AF090989 AF090990 NM_015556	33218	+	AK294895 NM_001204423	435993	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	436330	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	1.122637	0.0	denovo_WM_7:-26:0.716
chr2	216921590	216921770	reg1010345.p2	4.225	+	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	-43344	-	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-620898	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-621160	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	24864	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	25012	+	TSC_hg19_v1_chr2_+_216974084 NM_021141	52372	+	AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169##NM_021141|XRCC5|7520|X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)	0.034992	0.0	
chr2	62081722	62081816	reg1013014.p1	4.225	+	BC107162 BC107163 AK310908 AB527366 AM392542 AM392832 AM393518 TSC_hg19_v1_chr2_-_62081180 BX648834 BX649029 AK023367 BC036448 NM_001201543 NM_032180	-606	-	TSC_hg19_v1_chr2_-_61765394 BX647758 NM_003400	-316364	-	TSC_hg19_v1_chr2_-_61765383 BC032847 CR749840	-316390	-	U38846 EU446763 AB385091 TSC_hg19_v1_chr2_-_62115685 AK294665	33895	-	AK129860 TSC_hg19_v1_chr2_-_62115719 AK295330	33949	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	33965	-	BC107162|FAM161A|84140|family with sequence similarity 161, member A##BC107163|FAM161A|84140|family with sequence similarity 161, member A##AK310908|FAM161A|84140|family with sequence similarity 161, member A##AM392542|FAM161A|84140|family with sequence similarity 161, member A##AM392832|FAM161A|84140|family with sequence similarity 161, member A##AM393518|FAM161A|84140|family with sequence similarity 161, member A##BX648834|FAM161A|84140|family with sequence similarity 161, member A##BX649029|FAM161A|84140|family with sequence similarity 161, member A##AK023367|FAM161A|84140|family with sequence similarity 161, member A##BC036448|FAM161A|84140|family with sequence similarity 161, member A##NM_001201543|FAM161A|84140|family with sequence similarity 161, member A##NM_032180|FAM161A|84140|family with sequence similarity 161, member A##BX647758|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##NM_003400|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##BC032847|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##CR749840|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##U38846|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##EU446763|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK294665|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK129860|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK295330|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)	0.0	0.0	
chr2	678068	678221	reg1012712.p2	4.225	+	TSC_hg19_v1_chr2_-_677406 BC016010 AL137269 NM_152834	-733	-	BC033490 NM_001002919	-389900	-	TSC_hg19_v1_chr2_+_264946 NM_001040649 NM_004300 NM_007099 AK289934 M83653 BC020699 AK291861 BC007422 AB209838 BC106011 AB385551 BT007136 Y16846 M83654 M87546 S62885	-413232	+	TSC_hg19_v1_chr2_+_946534 BC035783 NM_018968 AJ003029 BC125251	268435	+	BC063107 NM_000547 NM_001206744 NM_001206745 NM_175719 BC095448 M17755 J02969 J02970 X17358 Y00406	739111	+	NM_175721 NM_175722 AF439430 CU687644	740035	+	BC016010|TMEM18|129787|transmembrane protein 18##AL137269|TMEM18|129787|transmembrane protein 18##NM_152834|TMEM18|129787|transmembrane protein 18##BC033490|FAM150B|285016|family with sequence similarity 150, member B##NM_001002919|FAM150B|285016|family with sequence similarity 150, member B##NM_001040649|ACP1|52|acid phosphatase 1, soluble##NM_004300|ACP1|52|acid phosphatase 1, soluble##NM_007099|ACP1|52|acid phosphatase 1, soluble##AK289934|ACP1|52|acid phosphatase 1, soluble##M83653|ACP1|52|acid phosphatase 1, soluble##BC020699|ACP1|52|acid phosphatase 1, soluble##AK291861|ACP1|52|acid phosphatase 1, soluble##BC007422|ACP1|52|acid phosphatase 1, soluble##AB209838|ACP1|52|acid phosphatase 1, soluble##BC106011|ACP1|52|acid phosphatase 1, soluble##BT007136|ACP1|52|acid phosphatase 1, soluble##Y16846|ACP1|52|acid phosphatase 1, soluble##M83654|ACP1|52|acid phosphatase 1, soluble##M87546|ACP1|52|acid phosphatase 1, soluble##S62885|ACP1|52|acid phosphatase 1, soluble##BC035783|SNTG2|54221|syntrophin, gamma 2##NM_018968|SNTG2|54221|syntrophin, gamma 2##AJ003029|SNTG2|54221|syntrophin, gamma 2##BC125251|SNTG2|54221|syntrophin, gamma 2##BC063107|TPO|7173|thyroid peroxidase##NM_000547|TPO|7173|thyroid peroxidase##NM_001206744|TPO|7173|thyroid peroxidase##NM_001206745|TPO|7173|thyroid peroxidase##NM_175719|TPO|7173|thyroid peroxidase##BC095448|TPO|7173|thyroid peroxidase##M17755|TPO|7173|thyroid peroxidase##J02969|TPO|7173|thyroid peroxidase##J02970|TPO|7173|thyroid peroxidase##X17358|TPO|7173|thyroid peroxidase##Y00406|TPO|7173|thyroid peroxidase##NM_175721|TPO|7173|thyroid peroxidase##NM_175722|TPO|7173|thyroid peroxidase##AF439430|TPO|7173|thyroid peroxidase	0.996715	0.0	denovo_WM_7:-17:0.470	denovo_WM_7:-18:0.527
chr3	125320896	125321076	reg1009498.p2	4.225	+	TSC_hg19_v1_chr3_-_125314371 NM_022776	-6613	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	-81933	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	-81955	-	TSC_hg19_v1_chr3_+_125635451 BC032772 BC041080	314470	+	BC073816 NM_001015050 NM_001195223	334897	-	AF231410 NM_001012337 BC141849 AK302014	367068	+	NM_022776|OSBPL11|114885|oxysterol binding protein-like 11##NM_003794|SNX4|8723|sorting nexin 4##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##BC032772|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC041080|LOC100125556|100125556|family with sequence similarity 86, member A pseudogene##BC073816|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001015050|ALG1L|200810|asparagine-linked glycosylation 1-like##NM_001195223|ALG1L|200810|asparagine-linked glycosylation 1-like##AF231410|ROPN1B|152015|rhophilin associated tail protein 1B##NM_001012337|ROPN1B|152015|rhophilin associated tail protein 1B##BC141849|ROPN1B|152015|rhophilin associated tail protein 1B	2.022232	0.0	
chr3	183301439	183301510	reg1009809.p1	4.225	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	-28022	-	TSC_hg19_v1_chr3_+_183165436 AK057000	-136044	+	NM_015078 BC064632 AK124500 AK310962	-155535	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	51926	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	114148	+	TSC_hg19_v1_chr3_-_183543366 BC006434 AK022810 NM_024871	241895	-	AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2##BC006434|MAP6D1|79929|MAP6 domain containing 1##AK022810|MAP6D1|79929|MAP6 domain containing 1##NM_024871|MAP6D1|79929|MAP6 domain containing 1	0.756388	0.0	denovo_WM_7:10:0.756
chr1	31252678	31252829	reg1011381.p1	4.224	+	TSC_hg19_v1_chr1_-_31230697 NM_006762	-22063	-	AB383742 TSC_hg19_v1_chr1_-_31230622 D42042 U30498 AK297014 AK307303 AK292009 BC106896 BC106897 U51240	-22121	-	TSC_hg19_v1_chr1_-_31196436 AK312949 NM_002379 AK075519	-56321	-	TSC_hg19_v1_chr1_-_31345363 AL049426	92645	-	AB385258 AF248634 NM_014654 TSC_hg19_v1_chr1_-_31381606	128795	-	TSC_hg19_v1_chr1_-_31538543 BC013398 D43951 AK291779 AK300457 AF315592 AK096476 AK222605	285764	-	NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##D42042|LAPTM5|7805|lysosomal protein transmembrane 5##U30498|LAPTM5|7805|lysosomal protein transmembrane 5##AK297014|LAPTM5|7805|lysosomal protein transmembrane 5##AK292009|LAPTM5|7805|lysosomal protein transmembrane 5##BC106896|LAPTM5|7805|lysosomal protein transmembrane 5##BC106897|LAPTM5|7805|lysosomal protein transmembrane 5##U51240|LAPTM5|7805|lysosomal protein transmembrane 5##AK312949|MATN1|4146|matrilin 1, cartilage matrix protein##NM_002379|MATN1|4146|matrilin 1, cartilage matrix protein##AK075519|MATN1|4146|matrilin 1, cartilage matrix protein##AL049426|SDC3|9672|syndecan 3##AF248634|SDC3|9672|syndecan 3##NM_014654|SDC3|9672|syndecan 3##BC013398|PUM1|9698|pumilio homolog 1 (Drosophila)##D43951|PUM1|9698|pumilio homolog 1 (Drosophila)##AK291779|PUM1|9698|pumilio homolog 1 (Drosophila)##AK300457|PUM1|9698|pumilio homolog 1 (Drosophila)##AF315592|PUM1|9698|pumilio homolog 1 (Drosophila)##AK096476|PUM1|9698|pumilio homolog 1 (Drosophila)##AK222605|PUM1|9698|pumilio homolog 1 (Drosophila)	0.0	0.0	
chr15	96883795	96883974	reg1016079.p1	4.224	+	NM_001145157	-7316	+	AK316086 NM_001145156	-8091	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	-9907	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	442788	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1620035	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	1620067	+	NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4	0.997786	0.0	
chr1	89665450	89665559	reg1011417.p1	4.224	+	AK304245 AB527149 AF288814 AK131094 AL832576 BC070055 BC017889 AK312417 BC008421 NM_052941	-933	-	AK096141 NM_207398	-23782	-	M55543 AK226018 BC073163 AK057968 AK314325 BC022272 NM_004120	-73763	-	AY358953 AK090479 AF328727 AF430643 TSC_hg19_v1_chr1_-_89738544 BC031639 AF430642 NM_001134486 NM_052942	73010	-	NM_198460 AK131356	163940	+	NM_001134476 TSC_hg19_v1_chr1_+_89990414	324911	+	AK304245|GBP4|115361|guanylate binding protein 4##AF288814|GBP4|115361|guanylate binding protein 4##AK131094|GBP4|115361|guanylate binding protein 4##AL832576|GBP4|115361|guanylate binding protein 4##BC070055|GBP4|115361|guanylate binding protein 4##BC017889|GBP4|115361|guanylate binding protein 4##AK312417|GBP4|115361|guanylate binding protein 4##BC008421|GBP4|115361|guanylate binding protein 4##NM_052941|GBP4|115361|guanylate binding protein 4##AK096141|GBP7|388646|guanylate binding protein 7##NM_207398|GBP7|388646|guanylate binding protein 7##M55543|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK226018|GBP2|2634|guanylate binding protein 2, interferon-inducible##BC073163|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK057968|GBP2|2634|guanylate binding protein 2, interferon-inducible##AK314325|GBP2|2634|guanylate binding protein 2, interferon-inducible##BC022272|GBP2|2634|guanylate binding protein 2, interferon-inducible##NM_004120|GBP2|2634|guanylate binding protein 2, interferon-inducible##AY358953|GBP5|115362|guanylate binding protein 5##AK090479|GBP5|115362|guanylate binding protein 5##AF328727|GBP5|115362|guanylate binding protein 5##AF430643|GBP5|115362|guanylate binding protein 5##BC031639|GBP5|115362|guanylate binding protein 5##AF430642|GBP5|115362|guanylate binding protein 5##NM_001134486|GBP5|115362|guanylate binding protein 5##NM_052942|GBP5|115362|guanylate binding protein 5##NM_198460|GBP6|163351|guanylate binding protein family, member 6##AK131356|GBP6|163351|guanylate binding protein family, member 6##NM_001134476|LRRC8B|23507|leucine rich repeat containing 8 family, member B	0.996579	0.0	denovo_WM_7:4:0.718
chr2	123204274	123204388	reg1002783.p1	4.224	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-691094	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-709866	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-796686	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1578533	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	4209376	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	4209461	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.0	0.0	
chr3	49851581	49851711	reg1015269.p2	4.224	+	TSC_hg19_v1_chr3_-_49851387 NM_003335 L13852	-257	-	CU675375 BT007026 DQ893307 DQ893707 TSC_hg19_v1_chr3_-_49851326 BC006378	-375	-	BC012170 NM_203370 TSC_hg19_v1_chr3_+_49840695	-10946	+	AB451320 AB451449 AB590668 CU674148 EF036504 TSC_hg19_v1_chr3_-_49894001 AK225873 BC000310 BC019283 AK292172 NM_005879 U77845 AK295780	42299	-	TSC_hg19_v1_chr3_-_49907340 BC019256 BC000497 BC001921 BC005828 BC017363 AK297437 BX647074 AK299953 AL136697 AK074899 AK297258 AK295588 AK075294 AK074856 NM_024046 AK315525	55699	-	TSC_hg19_v1_chr3_-_49941304 NM_001244937 NM_002447	89656	-	NM_003335|UBA7|7318|ubiquitin-like modifier activating enzyme 7##L13852|UBA7|7318|ubiquitin-like modifier activating enzyme 7##BT007026|UBA7|7318|ubiquitin-like modifier activating enzyme 7##DQ893307|UBA7|7318|ubiquitin-like modifier activating enzyme 7##DQ893707|UBA7|7318|ubiquitin-like modifier activating enzyme 7##BC006378|UBA7|7318|ubiquitin-like modifier activating enzyme 7##BC012170|FAM212A|389119|family with sequence similarity 212, member A##NM_203370|FAM212A|389119|family with sequence similarity 212, member A##AB451320|TRAIP|10293|TRAF interacting protein##AB451449|TRAIP|10293|TRAF interacting protein##EF036504|TRAIP|10293|TRAF interacting protein##AK225873|TRAIP|10293|TRAF interacting protein##BC000310|TRAIP|10293|TRAF interacting protein##BC019283|TRAIP|10293|TRAF interacting protein##AK292172|TRAIP|10293|TRAF interacting protein##NM_005879|TRAIP|10293|TRAF interacting protein##U77845|TRAIP|10293|TRAF interacting protein##AK295780|TRAIP|10293|TRAF interacting protein##BC019256|CAMKV|79012|CaM kinase-like vesicle-associated##BC000497|CAMKV|79012|CaM kinase-like vesicle-associated##BC001921|CAMKV|79012|CaM kinase-like vesicle-associated##BC005828|CAMKV|79012|CaM kinase-like vesicle-associated##BC017363|CAMKV|79012|CaM kinase-like vesicle-associated##AK297437|CAMKV|79012|CaM kinase-like vesicle-associated##BX647074|CAMKV|79012|CaM kinase-like vesicle-associated##AK299953|CAMKV|79012|CaM kinase-like vesicle-associated##AL136697|CAMKV|79012|CaM kinase-like vesicle-associated##AK074899|CAMKV|79012|CaM kinase-like vesicle-associated##AK297258|CAMKV|79012|CaM kinase-like vesicle-associated##AK295588|CAMKV|79012|CaM kinase-like vesicle-associated##AK075294|CAMKV|79012|CaM kinase-like vesicle-associated##AK074856|CAMKV|79012|CaM kinase-like vesicle-associated##NM_024046|CAMKV|79012|CaM kinase-like vesicle-associated##AK315525|CAMKV|79012|CaM kinase-like vesicle-associated##NM_001244937|MST1R|4486|macrophage stimulating 1 receptor (c-met-related tyrosine kinase)##NM_002447|MST1R|4486|macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	0.0	0.0	
chr5	64468320	64468500	reg1011788.p1	4.224	+	BX647971 TSC_hg19_v1_chr5_+_64064766 NM_005869 AK225161 AK225105 AK308223 AK312954 AY358569 AF039692 BC012117	-403626	+	TSC_hg19_v1_chr5_-_64064491 AK094073 AX748442 NM_173829	-403906	-	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	-403964	-	AY692424 NM_197941 AY692422	309314	-	TSC_hg19_v1_chr5_-_64858996 AF315941 BC005400 BC008504 NM_022145	390554	-	TSC_hg19_v1_chr5_+_64859122 AK025679 AK093675 AK300022 AK298175 AK301654 NM_015342 BC015385 AB384434 CU677289 GQ129262 GQ129263 D38552	390708	+	BX647971|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##NM_005869|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225161|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK225105|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK308223|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK312954|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AY358569|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AF039692|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##BC012117|CWC27|10283|CWC27 spliceosome-associated protein homolog (S. cerevisiae)##AK094073|SREK1IP1|285672|SREK1-interacting protein 1##NM_173829|SREK1IP1|285672|SREK1-interacting protein 1##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1##AY692424|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##NM_197941|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##AY692422|ADAMTS6|11174|ADAM metallopeptidase with thrombospondin type 1 motif, 6##AF315941|CENPK|64105|centromere protein K##BC005400|CENPK|64105|centromere protein K##BC008504|CENPK|64105|centromere protein K##NM_022145|CENPK|64105|centromere protein K##AK025679|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK300022|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK298175|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##AK301654|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##NM_015342|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##BC015385|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129262|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##GQ129263|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1##D38552|PPWD1|23398|peptidylprolyl isomerase domain and WD repeat containing 1	0.0	0.0	
chr9	26326647	26326744	reg1013807.p2	4.224	+	AK131322 NM_001004352	-260023	+	NM_001004125	-647840	-	BC017510 TSC_hg19_v1_chr9_-_25678278 BC046919 AY168647 BC110824	-648362	-	AB590748 CU687198 BC071953 TSC_hg19_v1_chr9_-_26892779 AK023719 BC014658 NM_001167575 NM_024828	566074	-	EU176453 EU176795 AB385043 TSC_hg19_v1_chr9_-_26947158 BC032551 AK022761	620409	-	TSC_hg19_v1_chr9_-_26947165 AK001642	620473	-	AK131322|LOC100506422|100506422|putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323##NM_001004352|LOC100506422|100506422|putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323##NM_001004125|TUSC1|286319|tumor suppressor candidate 1##BC017510|TUSC1|286319|tumor suppressor candidate 1##BC046919|TUSC1|286319|tumor suppressor candidate 1##AY168647|TUSC1|286319|tumor suppressor candidate 1##BC110824|TUSC1|286319|tumor suppressor candidate 1##BC071953|C9orf82|79886|chromosome 9 open reading frame 82##AK023719|C9orf82|79886|chromosome 9 open reading frame 82##BC014658|C9orf82|79886|chromosome 9 open reading frame 82##NM_001167575|C9orf82|79886|chromosome 9 open reading frame 82##NM_024828|C9orf82|79886|chromosome 9 open reading frame 82##EU176453|PLAA|9373|phospholipase A2-activating protein##EU176795|PLAA|9373|phospholipase A2-activating protein##BC032551|PLAA|9373|phospholipase A2-activating protein##AK022761|PLAA|9373|phospholipase A2-activating protein##AK001642|PLAA|9373|phospholipase A2-activating protein	0.0	0.942885	CTCF.p2:-22:0.943
chr10	75126858	75126957	reg1010203.p2	4.223	+	AK308746 AL833537 BC032856 NM_145170	-8348	-	AB529029 TSC_hg19_v1_chr10_-_75012387 AB049948 BC021106 AK025715 AK098291 AK303204 AF151890 NM_016065	-114560	-	TSC_hg19_v1_chr10_-_75007006 AF327347 BC136507 AK074420 NM_015190	-119876	-	TSC_hg19_v1_chr10_-_75173787 AK313024	46848	-	TSC_hg19_v1_chr10_-_75173792 AB062429 BC002632	46888	-	TSC_hg19_v1_chr10_-_75173817 AK222552 AK295319 AK300086 AK301681 AK309141 AK312447 AK307772 NM_001156 NM_004034	46921	-	AK308746|TTC18|118491|tetratricopeptide repeat domain 18##AL833537|TTC18|118491|tetratricopeptide repeat domain 18##BC032856|TTC18|118491|tetratricopeptide repeat domain 18##NM_145170|TTC18|118491|tetratricopeptide repeat domain 18##AB049948|MRPS16|51021|mitochondrial ribosomal protein S16##BC021106|MRPS16|51021|mitochondrial ribosomal protein S16##AK025715|MRPS16|51021|mitochondrial ribosomal protein S16##AK098291|MRPS16|51021|mitochondrial ribosomal protein S16##AF151890|MRPS16|51021|mitochondrial ribosomal protein S16##NM_016065|MRPS16|51021|mitochondrial ribosomal protein S16##AF327347|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##BC136507|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##AK074420|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##NM_015190|DNAJC9|23234|DnaJ (Hsp40) homolog, subfamily C, member 9##AK313024|ANXA7|310|annexin A7##AB062429|ANXA7|310|annexin A7##BC002632|ANXA7|310|annexin A7##AK222552|ANXA7|310|annexin A7##AK295319|ANXA7|310|annexin A7##AK300086|ANXA7|310|annexin A7##AK301681|ANXA7|310|annexin A7##AK309141|ANXA7|310|annexin A7##AK312447|ANXA7|310|annexin A7##AK307772|ANXA7|310|annexin A7##NM_001156|ANXA7|310|annexin A7##NM_004034|ANXA7|310|annexin A7	0.680343	0.0	denovo_WM_7:-2:0.551
chr11	117056365	117056503	reg1000886.p1	4.223	+	TSC_hg19_v1_chr11_+_117049977 AK303023	-6455	+	TSC_hg19_v1_chr11_+_117049872 AF151799 BC114522 BC114959 AY358442 NM_001040455 AK292974	-6542	+	TSC_hg19_v1_chr11_+_117049458 AK292501	-6877	+	NM_001001522 NM_003186 AK223002 M95787 TSC_hg19_v1_chr11_+_117070088 AK314043 BC010946 BC093050 BC004927 D17409	13645	+	BX640723 TSC_hg19_v1_chr11_+_117075706	19260	+	TSC_hg19_v1_chr11_-_117100552 BT006870 DQ890632 DQ893803	44121	-	AK303023|SIDT2|51092|SID1 transmembrane family, member 2##AF151799|SIDT2|51092|SID1 transmembrane family, member 2##BC114522|SIDT2|51092|SID1 transmembrane family, member 2##BC114959|SIDT2|51092|SID1 transmembrane family, member 2##AY358442|SIDT2|51092|SID1 transmembrane family, member 2##NM_001040455|SIDT2|51092|SID1 transmembrane family, member 2##AK292974|SIDT2|51092|SID1 transmembrane family, member 2##AK292501|SIDT2|51092|SID1 transmembrane family, member 2##NM_001001522|TAGLN|6876|transgelin##NM_003186|TAGLN|6876|transgelin##AK223002|TAGLN|6876|transgelin##M95787|TAGLN|6876|transgelin##AK314043|TAGLN|6876|transgelin##BC010946|TAGLN|6876|transgelin##BC093050|TAGLN|6876|transgelin##BC004927|TAGLN|6876|transgelin##D17409|TAGLN|6876|transgelin##BX640723|TAGLN|6876|transgelin##BT006870|PCSK7|9159|proprotein convertase subtilisin/kexin type 7##DQ890632|PCSK7|9159|proprotein convertase subtilisin/kexin type 7##DQ893803|PCSK7|9159|proprotein convertase subtilisin/kexin type 7	0.963263	0.0	denovo_WM_7:3:0.758
chr11	76758140	76758235	reg1000246.p1	4.223	+	NM_138706 AK127544 AK292773 TSC_hg19_v1_chr11_+_76745441 AK313682 AK172863 BC103908 BC103909 BC103910	-12728	+	TSC_hg19_v1_chr11_+_76571985 AK308856 AK002100 AK316120 AK295327 AK295142 AK294978 BC049837 BC063034 AK293800 BC073853 CU687264	-186194	+	TSC_hg19_v1_chr11_+_76571961 NM_018367 AK315000 AF327353 AF214454	-186255	+	TSC_hg19_v1_chr11_+_76778017 BC018123 NM_004055 AK128124 AK313132 AK310978 AK094150 AB209087	19840	+	CU686775 BC069115 BC069365 NM_006189	55697	+	NM_000260 NM_001127179 U39226 NM_001127180 U34227 U55208 U55209 BC144519	81141	+	NM_138706|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK127544|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK292773|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK313682|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK172863|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103908|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103909|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103910|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK308856|ACER3|55331|alkaline ceramidase 3##AK002100|ACER3|55331|alkaline ceramidase 3##AK316120|ACER3|55331|alkaline ceramidase 3##AK295327|ACER3|55331|alkaline ceramidase 3##AK295142|ACER3|55331|alkaline ceramidase 3##AK294978|ACER3|55331|alkaline ceramidase 3##BC049837|ACER3|55331|alkaline ceramidase 3##BC063034|ACER3|55331|alkaline ceramidase 3##AK293800|ACER3|55331|alkaline ceramidase 3##BC073853|ACER3|55331|alkaline ceramidase 3##NM_018367|ACER3|55331|alkaline ceramidase 3##AK315000|ACER3|55331|alkaline ceramidase 3##AF327353|ACER3|55331|alkaline ceramidase 3##AF214454|ACER3|55331|alkaline ceramidase 3##BC018123|CAPN5|726|calpain 5##NM_004055|CAPN5|726|calpain 5##AK128124|CAPN5|726|calpain 5##AK313132|CAPN5|726|calpain 5##AK310978|CAPN5|726|calpain 5##AK094150|CAPN5|726|calpain 5##AB209087|CAPN5|726|calpain 5##BC069115|OMP|4975|olfactory marker protein##BC069365|OMP|4975|olfactory marker protein##NM_006189|OMP|4975|olfactory marker protein##NM_000260|MYO7A|4647|myosin VIIA##NM_001127179|MYO7A|4647|myosin VIIA##U39226|MYO7A|4647|myosin VIIA##NM_001127180|MYO7A|4647|myosin VIIA##U34227|MYO7A|4647|myosin VIIA##U55208|MYO7A|4647|myosin VIIA##U55209|MYO7A|4647|myosin VIIA##BC144519|MYO7A|4647|myosin VIIA	0.0	0.021139	
chr1	205255841	205255932	reg1000936.p4	4.223	+	AY358192 TSC_hg19_v1_chr1_+_205236667	-19252	+	AK293734 NM_001242925	-57828	+	TSC_hg19_v1_chr1_+_205197073 AB007950 NM_014858 AK131419	-58803	+	CU677905 AM392904 AB463145 BC017306 TSC_hg19_v1_chr1_-_205290874 AK074830 AK309520 AL136891 NM_030952 AK303577	34957	-	BC036076 TSC_hg19_v1_chr1_-_205313311	57424	-	AK299227 AK001610 NM_018203 AK096590	70154	-	AY358192|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK293734|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_001242925|TMCC2|9911|transmembrane and coiled-coil domain family 2##AB007950|TMCC2|9911|transmembrane and coiled-coil domain family 2##NM_014858|TMCC2|9911|transmembrane and coiled-coil domain family 2##AK131419|TMCC2|9911|transmembrane and coiled-coil domain family 2##AM392904|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC017306|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK074830|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK309520|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AL136891|NUAK2|81788|NUAK family, SNF1-like kinase, 2##NM_030952|NUAK2|81788|NUAK family, SNF1-like kinase, 2##AK303577|NUAK2|81788|NUAK family, SNF1-like kinase, 2##BC036076|KLHDC8A|55220|kelch domain containing 8A##AK299227|KLHDC8A|55220|kelch domain containing 8A##AK001610|KLHDC8A|55220|kelch domain containing 8A##NM_018203|KLHDC8A|55220|kelch domain containing 8A##AK096590|KLHDC8A|55220|kelch domain containing 8A	0.0	0.0	
chr12	12761682	12761837	reg1007852.p2	4.223	+	AB052156 BC109234 BC109235 AF506796 NM_030640 TSC_hg19_v1_chr12_-_12715528	-46359	-	TSC_hg19_v1_chr12_+_12510051 NM_058169 AK075028 BC013668 AY037865 AY037866 DQ891778 DQ894962 CU680646	-251594	+	AY358563 TSC_hg19_v1_chr12_-_12503210 AK023622 NM_018050 AK001160 BC032998	-258587	-	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	3036	+	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	3124	+	AK096388 NM_006143	87361	-	AB052156|DUSP16|80824|dual specificity phosphatase 16##BC109234|DUSP16|80824|dual specificity phosphatase 16##BC109235|DUSP16|80824|dual specificity phosphatase 16##AF506796|DUSP16|80824|dual specificity phosphatase 16##NM_030640|DUSP16|80824|dual specificity phosphatase 16##NM_058169|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AK075028|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##BC013668|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037865|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY037866|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ891778|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##DQ894962|LOH12CR1|118426|loss of heterozygosity, 12, chromosomal region 1##AY358563|MANSC1|54682|MANSC domain containing 1##AK023622|MANSC1|54682|MANSC domain containing 1##NM_018050|MANSC1|54682|MANSC domain containing 1##AK001160|MANSC1|54682|MANSC domain containing 1##BC032998|MANSC1|54682|MANSC domain containing 1##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19	0.0	0.0	
chr2	47151263	47151369	reg1004392.p1	4.223	+	NM_001171507 NM_001171510	-8066	-	TSC_hg19_v1_chr2_-_47142950 NM_001171506 NM_001171509 NM_139279	-8328	-	TSC_hg19_v1_chr2_-_47142939 AL833900 AF537214 CR749562	-8373	-	AL834383 NM_020458 TSC_hg19_v1_chr2_+_47168358	17020	+	TSC_hg19_v1_chr2_+_47168400 BC047709 BC111487	17087	+	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	17557	-	NM_001171507|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171510|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171506|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171509|MCFD2|90411|multiple coagulation factor deficiency 2##NM_139279|MCFD2|90411|multiple coagulation factor deficiency 2##AL833900|MCFD2|90411|multiple coagulation factor deficiency 2##AF537214|MCFD2|90411|multiple coagulation factor deficiency 2##CR749562|MCFD2|90411|multiple coagulation factor deficiency 2##AL834383|TTC7A|57217|tetratricopeptide repeat domain 7A##NM_020458|TTC7A|57217|tetratricopeptide repeat domain 7A##BC111487|TTC7A|57217|tetratricopeptide repeat domain 7A##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2	1.563562	0.0	denovo_WM_7:36:0.928
chr3	42649368	42649459	reg1014209.p1	4.223	+	NM_001201572	-6842	-	L04288 TSC_hg19_v1_chr3_+_42642180 AK097208 BX538094 NM_005385 AK292017 BC144518 BX957218 CR749571 AB209888 BC072680 BC051318 BC035644 BC020672	-7244	+	TSC_hg19_v1_chr3_+_42632351 BC017804 AK312225 DQ891965 EU176663 BC020444	-17034	+	AK127065 NM_145166	45762	+	TSC_hg19_v1_chr3_+_42700837 AL133062 BC021855	51459	+	TSC_hg19_v1_chr3_+_42704598 AB033016	55185	+	NM_001201572|SEC22C|9117|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)##L04288|NKTR|4820|natural killer-tumor recognition sequence##AK097208|NKTR|4820|natural killer-tumor recognition sequence##BX538094|NKTR|4820|natural killer-tumor recognition sequence##NM_005385|NKTR|4820|natural killer-tumor recognition sequence##AK292017|NKTR|4820|natural killer-tumor recognition sequence##BC144518|NKTR|4820|natural killer-tumor recognition sequence##BX957218|NKTR|4820|natural killer-tumor recognition sequence##CR749571|NKTR|4820|natural killer-tumor recognition sequence##AB209888|NKTR|4820|natural killer-tumor recognition sequence##BC072680|NKTR|4820|natural killer-tumor recognition sequence##BC051318|NKTR|4820|natural killer-tumor recognition sequence##BC035644|NKTR|4820|natural killer-tumor recognition sequence##BC020672|NKTR|4820|natural killer-tumor recognition sequence##BC017804|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##AK312225|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##DQ891965|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##EU176663|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##BC020444|SS18L2|51188|synovial sarcoma translocation gene on chromosome 18-like 2##AK127065|ZBTB47|92999|zinc finger and BTB domain containing 47##NM_145166|ZBTB47|92999|zinc finger and BTB domain containing 47##AL133062|ZBTB47|92999|zinc finger and BTB domain containing 47##BC021855|ZBTB47|92999|zinc finger and BTB domain containing 47##AB033016|ZBTB47|92999|zinc finger and BTB domain containing 47	2.897013	0.0	denovo_WM_7:53:0.907	denovo_WM_7:68:0.914	denovo_WM_7:83:0.926
chr5	139031594	139031774	reg1007131.p1	4.223	+	TSC_hg19_v1_chr5_+_139028524 AK001782	-3176	+	TSC_hg19_v1_chr5_+_139028290 AB097005 AB097032 NM_016463	-3517	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	-3700	+	BC002490 TSC_hg19_v1_chr5_+_139060088 AB463548 GQ379202 AK314420	28400	+	AF151029 TSC_hg19_v1_chr5_+_139060229	28528	+	TSC_hg19_v1_chr5_+_139060403 DQ892589 DQ895807	28708	+	AK001782|CXXC5|51523|CXXC finger protein 5##AB097005|CXXC5|51523|CXXC finger protein 5##AB097032|CXXC5|51523|CXXC finger protein 5##NM_016463|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5##BC002490|CXXC5|51523|CXXC finger protein 5##GQ379202|CXXC5|51523|CXXC finger protein 5##AK314420|CXXC5|51523|CXXC finger protein 5##AF151029|CXXC5|51523|CXXC finger protein 5##DQ892589|CXXC5|51523|CXXC finger protein 5##DQ895807|CXXC5|51523|CXXC finger protein 5	0.095907	0.0	
chr1	19717847	19718027	reg1002439.p2	4.222	+	NM_001040125 NM_001040126 NM_017765 TSC_hg19_v1_chr1_+_19638819 AK000327 AK130175 AK125580 AK130171 AK172745 BC015324	-79142	+	BC007352 BC012171 TSC_hg19_v1_chr1_-_19638614 BC010852 NM_003689	-79303	-	TSC_hg19_v1_chr1_-_19638598 Y16675 AF026947 AK225267	-79332	-	TSC_hg19_v1_chr1_-_19811972 AK313113 BC107752	94030	-	TSC_hg19_v1_chr1_-_19812006 AK125085	94069	-	NM_001206540 NM_004930 TSC_hg19_v1_chr1_-_19812073	94152	-	NM_001040125|PQLC2|54896|PQ loop repeat containing 2##NM_001040126|PQLC2|54896|PQ loop repeat containing 2##NM_017765|PQLC2|54896|PQ loop repeat containing 2##AK000327|PQLC2|54896|PQ loop repeat containing 2##AK130175|PQLC2|54896|PQ loop repeat containing 2##AK125580|PQLC2|54896|PQ loop repeat containing 2##AK130171|PQLC2|54896|PQ loop repeat containing 2##AK172745|PQLC2|54896|PQ loop repeat containing 2##BC015324|PQLC2|54896|PQ loop repeat containing 2##BC007352|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##BC012171|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##BC010852|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##NM_003689|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##Y16675|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##AF026947|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##AK225267|AKR7A2|8574|aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)##AK313113|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##BC107752|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##AK125085|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##NM_001206540|CAPZB|832|capping protein (actin filament) muscle Z-line, beta##NM_004930|CAPZB|832|capping protein (actin filament) muscle Z-line, beta	0.0	0.868925	CTCF.p2:71:0.869
chr2	231480363	231480494	reg1005336.p3	4.222	+	AK091898 NM_001206704	-198958	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-199472	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-199509	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	97118	+	TSC_hg19_v1_chr2_+_231577633 BC020570	97216	+	AK292382 NM_001130849 NM_001130850 AK315692	97850	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	1.988755	0.0	denovo_WM_7:103:0.681
chr8	29387832	29387910	reg1003627.p2	4.222	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-179801	-	AL137704 NM_057158	-181550	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-267257	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	552603	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	552701	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	565072	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	1.989617	0.0	denovo_WM_7:45:0.273	denovo_WM_7:48:0.606	denovo_WM_7:63:0.718
chr9	86046459	86046548	reg1012807.p1	4.222	+	BC037253 NM_001244961	-99628	-	GQ129452 BC023560 NM_001244962	-164356	-	BC023566 NM_152573 TSC_hg19_v1_chr9_-_85678058 AK056176	-368437	-	NM_001244960 AY137774	36156	-	AK094281 EF560742 TSC_hg19_v1_chr9_-_86153270 AK297722 AK223597 NM_001244959 NM_174938 BC041376	106702	-	BC142991 BC036421 BC045782 TSC_hg19_v1_chr9_+_86238057 NM_001001551 NM_001190727 AY615889	191477	+	BC037253|FRMD3|257019|FERM domain containing 3##NM_001244961|FRMD3|257019|FERM domain containing 3##GQ129452|FRMD3|257019|FERM domain containing 3##BC023560|FRMD3|257019|FERM domain containing 3##NM_001244962|FRMD3|257019|FERM domain containing 3##BC023566|RASEF|158158|RAS and EF-hand domain containing##NM_152573|RASEF|158158|RAS and EF-hand domain containing##AK056176|RASEF|158158|RAS and EF-hand domain containing##NM_001244960|FRMD3|257019|FERM domain containing 3##AY137774|FRMD3|257019|FERM domain containing 3##AK094281|FRMD3|257019|FERM domain containing 3##EF560742|FRMD3|257019|FERM domain containing 3##AK297722|FRMD3|257019|FERM domain containing 3##AK223597|FRMD3|257019|FERM domain containing 3##NM_001244959|FRMD3|257019|FERM domain containing 3##NM_174938|FRMD3|257019|FERM domain containing 3##BC041376|FRMD3|257019|FERM domain containing 3##BC142991|C9orf103|414328|chromosome 9 open reading frame 103##BC036421|C9orf103|414328|chromosome 9 open reading frame 103##BC045782|C9orf103|414328|chromosome 9 open reading frame 103##NM_001001551|C9orf103|414328|chromosome 9 open reading frame 103##NM_001190727|C9orf103|414328|chromosome 9 open reading frame 103##AY615889|C9orf103|414328|chromosome 9 open reading frame 103	0.0	0.0	
chr11	128500387	128500547	reg1008091.p2	4.221	+	BX640634 NM_001143820	-43015	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-108333	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-108504	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	63331	+	TSC_hg19_v1_chr11_+_128563966 AK313370	63494	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	63513	+	BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1	0.0	0.733801	CTCF.p2:-13:0.734
chr1	207436354	207436465	reg1010513.p1	4.221	+	TSC_hg19_v1_chr1_+_207277658 BC022312 NM_000715 AK303798 AK313164 M31452 AK303793	-158760	+	BC005378 NM_000716 NM_001017364 L11245 NM_001017367 AK315137	-173788	+	NM_001017365 NM_001017366	-174198	+	NM_000574 NM_001114752 TSC_hg19_v1_chr1_+_207494999 AF052110 AX772832	58503	+	TSC_hg19_v1_chr1_+_207495024 AK312448 AK300621 AK298549 BC001288 M30142 M31516	58626	+	TSC_hg19_v1_chr1_+_207495084 AB240569 AB240570	58668	+	BC022312|C4BPA|722|complement component 4 binding protein, alpha##NM_000715|C4BPA|722|complement component 4 binding protein, alpha##AK303798|C4BPA|722|complement component 4 binding protein, alpha##AK313164|C4BPA|722|complement component 4 binding protein, alpha##M31452|C4BPA|722|complement component 4 binding protein, alpha##AK303793|C4BPA|722|complement component 4 binding protein, alpha##BC005378|C4BPB|725|complement component 4 binding protein, beta##NM_000716|C4BPB|725|complement component 4 binding protein, beta##NM_001017364|C4BPB|725|complement component 4 binding protein, beta##L11245|C4BPB|725|complement component 4 binding protein, beta##NM_001017367|C4BPB|725|complement component 4 binding protein, beta##AK315137|C4BPB|725|complement component 4 binding protein, beta##NM_001017365|C4BPB|725|complement component 4 binding protein, beta##NM_001017366|C4BPB|725|complement component 4 binding protein, beta##NM_000574|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##NM_001114752|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AF052110|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK312448|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK300621|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK298549|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##BC001288|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M30142|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M31516|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AB240569|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AB240570|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)	1.995159	0.0	denovo_WM_7:88:0.295	denovo_WM_7:89:0.295	denovo_WM_7:90:0.295
chr1	227900537	227900644	reg1011517.p2	4.221	+	AK311313 TSC_hg19_v1_chr1_+_227751265	-149309	+	TSC_hg19_v1_chr1_+_227751254 NM_178549 AK026475 AK307248 BC042500	-149352	+	TSC_hg19_v1_chr1_-_227506194 NM_003607 NM_014826 U59305	-394540	-	AK055266 AK093736 BC032775 TSC_hg19_v1_chr1_+_227916386	15727	+	AY090635 NM_053052	22106	+	TSC_hg19_v1_chr1_-_227922985 BC011928	22381	-	AK311313|ZNF678|339500|zinc finger protein 678##NM_178549|ZNF678|339500|zinc finger protein 678##AK026475|ZNF678|339500|zinc finger protein 678##AK307248|ZNF678|339500|zinc finger protein 678##BC042500|ZNF678|339500|zinc finger protein 678##NM_003607|CDC42BPA|8476|CDC42 binding protein kinase alpha (DMPK-like)##NM_014826|CDC42BPA|8476|CDC42 binding protein kinase alpha (DMPK-like)##U59305|CDC42BPA|8476|CDC42 binding protein kinase alpha (DMPK-like)##AK055266|LOC100130093|100130093|uncharacterized LOC100130093##AK093736|LOC100130093|100130093|uncharacterized LOC100130093##AY090635|SNAP47|116841|synaptosomal-associated protein, 47kDa##NM_053052|SNAP47|116841|synaptosomal-associated protein, 47kDa##BC011928|JMJD4|65094|jumonji domain containing 4	0.0	0.0	
chr15	102285610	102285692	reg1012824.p1	4.221	+	TSC_hg19_v1_chr15_-_102264638 BC132671 BC136315 BC143943 AK056653 AX721055 NM_152334	-20996	-	TSC_hg19_v1_chr15_-_102192580 BC006150 BC008873 AF353992 AK315584 AK297048 AK026257 AK296553 NM_025141 NM_078474	-93185	-	TSC_hg19_v1_chr15_-_102030140 NM_002570 NM_138319 NM_138320 NM_138321 NM_138322 NM_138323 NM_138324 NM_138325	-255489	-	BC137002 BC137003 NM_001005326	60260	+	BC137064 BC137065 NM_001001674	72726	+	AY792621 NM_001195021	96670	+	BC132671|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC136315|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC143943|TARSL2|123283|threonyl-tRNA synthetase-like 2##AK056653|TARSL2|123283|threonyl-tRNA synthetase-like 2##NM_152334|TARSL2|123283|threonyl-tRNA synthetase-like 2##BC006150|TM2D3|80213|TM2 domain containing 3##BC008873|TM2D3|80213|TM2 domain containing 3##AF353992|TM2D3|80213|TM2 domain containing 3##AK315584|TM2D3|80213|TM2 domain containing 3##AK297048|TM2D3|80213|TM2 domain containing 3##AK026257|TM2D3|80213|TM2 domain containing 3##AK296553|TM2D3|80213|TM2 domain containing 3##NM_025141|TM2D3|80213|TM2 domain containing 3##NM_078474|TM2D3|80213|TM2 domain containing 3##NM_002570|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138319|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138320|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138321|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138322|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138323|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138324|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##NM_138325|PCSK6|5046|proprotein convertase subtilisin/kexin type 6##BC137002|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##BC137003|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##NM_001005326|OR4F6|390648|olfactory receptor, family 4, subfamily F, member 6##BC137064|OR4F15|390649|olfactory receptor, family 4, subfamily F, member 15##BC137065|OR4F15|390649|olfactory receptor, family 4, subfamily F, member 15##NM_001001674|OR4F15|390649|olfactory receptor, family 4, subfamily F, member 15##AY792621|GPCRLTM7|100272148|putative olfactory receptor GPCRLTM7##NM_001195021|GPCRLTM7|100272148|putative olfactory receptor GPCRLTM7	0.0	0.0	
chr17	28602965	28603104	reg1011754.p1	4.221	+	NM_001045	-40081	-	TSC_hg19_v1_chr17_+_28443846 AK297102 AL136806 NM_032141 AK094552 BC062425 AK313963 BC105044 BC105046 BC143417 BC143539 BC046116 BC040118 AF161358 BC016313 AB462988 AM392705 AM392719 CR533555	-159193	+	NM_198529 BX648689 BC137519	-334330	+	BT007018 CU678536 AB463443 AK301948 X92106 TSC_hg19_v1_chr17_-_28619013 BC003616 AK223403 AK312896	15925	-	NM_000386 TSC_hg19_v1_chr17_-_28619220	16169	-	AK290266 BC137201 BC137202 AY358153 NM_206832 AK172838	58028	-	NM_001045|SLC6A4|6532|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4##AK297102|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AL136806|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_032141|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK094552|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC062425|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AK313963|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105044|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC105046|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143417|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC143539|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC046116|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC040118|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AF161358|NSRP1|84081|nuclear speckle splicing regulatory protein 1##BC016313|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392705|NSRP1|84081|nuclear speckle splicing regulatory protein 1##AM392719|NSRP1|84081|nuclear speckle splicing regulatory protein 1##CR533555|NSRP1|84081|nuclear speckle splicing regulatory protein 1##NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5##BT007018|BLMH|642|bleomycin hydrolase##AK301948|BLMH|642|bleomycin hydrolase##X92106|BLMH|642|bleomycin hydrolase##BC003616|BLMH|642|bleomycin hydrolase##AK223403|BLMH|642|bleomycin hydrolase##AK312896|BLMH|642|bleomycin hydrolase##NM_000386|BLMH|642|bleomycin hydrolase##AK290266|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137201|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##BC137202|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AY358153|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##NM_206832|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1##AK172838|TMIGD1|388364|transmembrane and immunoglobulin domain containing 1	0.0	0.0	
chr5	10643881	10644003	reg1009492.p1	4.221	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-79500	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-201790	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-201939	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	117317	-	TSC_hg19_v1_chr5_-_10761341 BC002726	117400	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	117457	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.995214	0.0	
chr9	78790125	78790197	reg1006398.p1	4.221	+	TSC_hg19_v1_chr9_+_78505588 NM_001190482 NM_006200 AK056202 AK225773 AK310862 AX805774 BC012064	-284526	+	TSC_hg19_v1_chr9_+_77703429 AK291511 AK222596 U63717 BC007459 AB528711 CU675669	-1086651	+	TSC_hg19_v1_chr9_+_77703406 NM_012383	-1086761	+	BC015473 TSC_hg19_v1_chr9_-_79009434 BC007069 AK002011 AK307079 AK315734 NM_018339	219230	-	AY196293 NM_001097634	266420	+	NM_001097633 NM_001490 TSC_hg19_v1_chr9_+_79074142 AY196294 AY196295 AL832647	283955	+	NM_001190482|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##NM_006200|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK056202|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK225773|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK310862|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##BC012064|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK291511|OSTF1|26578|osteoclast stimulating factor 1##AK222596|OSTF1|26578|osteoclast stimulating factor 1##U63717|OSTF1|26578|osteoclast stimulating factor 1##BC007459|OSTF1|26578|osteoclast stimulating factor 1##NM_012383|OSTF1|26578|osteoclast stimulating factor 1##BC007069|RFK|55312|riboflavin kinase##AK002011|RFK|55312|riboflavin kinase##AK307079|RFK|55312|riboflavin kinase##AK315734|RFK|55312|riboflavin kinase##NM_018339|RFK|55312|riboflavin kinase##AY196293|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097634|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097633|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001490|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196294|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196295|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AL832647|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2	0.0	0.0	
chr1	154838339	154838519	reg1005659.p2	4.220	+	CU692066 HQ448417 AF438203 BC042147 NM_170782	-6167	-	TSC_hg19_v1_chr1_-_154600448 NM_001025107 AK097241	-237964	-	X98561 TSC_hg19_v1_chr1_-_154600438 AB209891 AF084516 BX640741 BX538232	-238015	-	BX649146 TSC_hg19_v1_chr1_-_154840541	2072	-	AF031815 Y08263 TSC_hg19_v1_chr1_-_154842763 AJ251016 AK310077 NM_001204087 NM_002249	4317	-	BT019976 CR541998 TSC_hg19_v1_chr1_-_154909187 L77213	70745	-	HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001025107|ADAR|103|adenosine deaminase, RNA-specific##AK097241|ADAR|103|adenosine deaminase, RNA-specific##AB209891|ADAR|103|adenosine deaminase, RNA-specific##AF084516|ADAR|103|adenosine deaminase, RNA-specific##BX640741|ADAR|103|adenosine deaminase, RNA-specific##BX538232|ADAR|103|adenosine deaminase, RNA-specific##AF031815|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##Y08263|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AJ251016|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AK310077|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001204087|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_002249|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BT019976|PMVK|10654|phosphomevalonate kinase##CR541998|PMVK|10654|phosphomevalonate kinase##L77213|PMVK|10654|phosphomevalonate kinase	0.0	0.0	
chr15	60690498	60690619	reg1013143.p1	4.220	+	AB587463 BC068065 BC009564 BC021114 BC052567 BC001388 BC013843 D00017 TSC_hg19_v1_chr15_-_60690186 AK222542 BX640598 AK297923 BC015834 BC023990 BC066955 BC093056 D28364 NM_001002857 NM_001002858 NM_001136015 NM_004039 AK309956 BC016774	-397	-	TSC_hg19_v1_chr15_+_60296509 AK314075	-394009	+	EF565104 TSC_hg19_v1_chr15_+_60296453	-394109	+	TSC_hg19_v1_chr15_-_60771277 BC020918 BC151844 BC140894 AF502591 AK055752 CR749852 AY358546 AL832046 AK095389 BX647873 NM_001018089 NM_024611	80716	-	HQ692818 HQ709174 L14611 BC100987 BC100988 BC100989 BC100990 NM_134262 TSC_hg19_v1_chr15_-_60884713 AB209916	194121	-	U04899 U04898 NM_002943 NM_134260	229127	-	BC068065|ANXA2|302|annexin A2##BC009564|ANXA2|302|annexin A2##BC021114|ANXA2|302|annexin A2##BC052567|ANXA2|302|annexin A2##BC001388|ANXA2|302|annexin A2##BC013843|ANXA2|302|annexin A2##D00017|ANXA2|302|annexin A2##AK222542|ANXA2|302|annexin A2##BX640598|ANXA2|302|annexin A2##AK297923|ANXA2|302|annexin A2##BC015834|ANXA2|302|annexin A2##BC023990|ANXA2|302|annexin A2##BC066955|ANXA2|302|annexin A2##BC093056|ANXA2|302|annexin A2##D28364|ANXA2|302|annexin A2##NM_001002857|ANXA2|302|annexin A2##NM_001002858|ANXA2|302|annexin A2##NM_001136015|ANXA2|302|annexin A2##NM_004039|ANXA2|302|annexin A2##BC016774|ANXA2|302|annexin A2##AK314075|FOXB1|27023|forkhead box B1##BC020918|NARG2|79664|NMDA receptor regulated 2##BC151844|NARG2|79664|NMDA receptor regulated 2##BC140894|NARG2|79664|NMDA receptor regulated 2##AF502591|NARG2|79664|NMDA receptor regulated 2##AK055752|NARG2|79664|NMDA receptor regulated 2##CR749852|NARG2|79664|NMDA receptor regulated 2##AY358546|NARG2|79664|NMDA receptor regulated 2##AL832046|NARG2|79664|NMDA receptor regulated 2##AK095389|NARG2|79664|NMDA receptor regulated 2##BX647873|NARG2|79664|NMDA receptor regulated 2##NM_001018089|NARG2|79664|NMDA receptor regulated 2##NM_024611|NARG2|79664|NMDA receptor regulated 2##HQ692818|RORA|6095|RAR-related orphan receptor A##HQ709174|RORA|6095|RAR-related orphan receptor A##L14611|RORA|6095|RAR-related orphan receptor A##BC100987|RORA|6095|RAR-related orphan receptor A##BC100988|RORA|6095|RAR-related orphan receptor A##BC100989|RORA|6095|RAR-related orphan receptor A##BC100990|RORA|6095|RAR-related orphan receptor A##NM_134262|RORA|6095|RAR-related orphan receptor A##U04899|RORA|6095|RAR-related orphan receptor A##U04898|RORA|6095|RAR-related orphan receptor A##NM_002943|RORA|6095|RAR-related orphan receptor A##NM_134260|RORA|6095|RAR-related orphan receptor A	0.99725	0.0	
chr1	90962395	90962549	reg1008869.p1	4.220	+	TSC_hg19_v1_chr1_+_90460726 NM_182975 NM_182976 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073	-501756	+	BC009486 TSC_hg19_v1_chr1_+_90287584	-674908	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	-675014	+	BC126439 BC126441 AY338397 NM_020063	220313	-	BC050656 TSC_hg19_v1_chr1_-_91487020 AK024026 NM_016620	524566	-	TSC_hg19_v1_chr1_-_91487583 BC041138 AK291520	525091	-	NM_182975|ZNF326|284695|zinc finger protein 326##NM_182976|ZNF326|284695|zinc finger protein 326##BC052645|ZNF326|284695|zinc finger protein 326##BC061521|ZNF326|284695|zinc finger protein 326##BC038454|ZNF326|284695|zinc finger protein 326##BC090866|ZNF326|284695|zinc finger protein 326##AK000410|ZNF326|284695|zinc finger protein 326##BC053888|ZNF326|284695|zinc finger protein 326##BC014899|ZNF326|284695|zinc finger protein 326##BC070341|ZNF326|284695|zinc finger protein 326##BC013102|ZNF326|284695|zinc finger protein 326##AK303707|ZNF326|284695|zinc finger protein 326##AK297073|ZNF326|284695|zinc finger protein 326##BC009486|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC126439|BARHL2|343472|BarH-like homeobox 2##BC126441|BARHL2|343472|BarH-like homeobox 2##AY338397|BARHL2|343472|BarH-like homeobox 2##NM_020063|BARHL2|343472|BarH-like homeobox 2##BC050656|ZNF644|84146|zinc finger protein 644##AK024026|ZNF644|84146|zinc finger protein 644##NM_016620|ZNF644|84146|zinc finger protein 644##BC041138|ZNF644|84146|zinc finger protein 644##AK291520|ZNF644|84146|zinc finger protein 644	0.0	0.0	
chr3	56787394	56787532	reg1014117.p1	4.220	+	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-70256	-	BC029354 NM_015224	-89390	-	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	-196217	+	AK293864 AB209661 NM_001128616	22206	-	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	48448	-	AY221117 NM_181727 BC126274 BC136498	307040	+	BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##BC029354|FAM208A|23272|family with sequence similarity 208, member A##NM_015224|FAM208A|23272|family with sequence similarity 208, member A##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12	0.0	0.0	
chr3	75098867	75098990	reg1012345.p2	4.220	+	AB384611 BC150608 NM_020872	-528626	-	AB384112 BC014432 BC150623 AB029018 BC152417 NM_015009 TSC_hg19_v1_chr3_-_73674093	-1424890	-	BC051316 BC064501 NM_018029	-1988119	+	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	385221	-	AK000525 NM_001124759	614555	+	BC111371 TSC_hg19_v1_chr3_+_75721431 BC039495	622558	+	BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC014432|PDZRN3|23024|PDZ domain containing ring finger 3##BC150623|PDZRN3|23024|PDZ domain containing ring finger 3##AB029018|PDZRN3|23024|PDZ domain containing ring finger 3##BC152417|PDZRN3|23024|PDZ domain containing ring finger 3##NM_015009|PDZRN3|23024|PDZ domain containing ring finger 3##BC051316|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC064501|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##NM_018029|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##AK000525|FLJ20518|647476|FSHD region gene 2 family, member C pseudogene##NM_001124759|FRG2C|100288801|FSHD region gene 2 family, member C##BC111371|LOC401074|401074|uncharacterized LOC401074##BC039495|LOC401074|401074|uncharacterized LOC401074	0.0	0.0	
chr7	25933006	25933097	reg1012554.p2	4.220	+	AB040290 AF330057 AF440392 NM_022150	-664971	-	TSC_hg19_v1_chr7_-_25219932 BC060879 NM_138811 BC043269 AK097248	-713180	-	TSC_hg19_v1_chr7_-_25164943 AK311836 BC024216 NM_018947	-768111	-	TSC_hg19_v1_chr7_+_26191817 NM_004289 BC068455 AF133059 AF134891	258882	+	TSC_hg19_v1_chr7_-_26232151 BX538099	299100	-	TSC_hg19_v1_chr7_-_26240358 BC000506 M29064 M29065	307290	-	AB040290|NPVF|64111|neuropeptide VF precursor##AF330057|NPVF|64111|neuropeptide VF precursor##AF440392|NPVF|64111|neuropeptide VF precursor##NM_022150|NPVF|64111|neuropeptide VF precursor##BC060879|C7orf31|136895|chromosome 7 open reading frame 31##NM_138811|C7orf31|136895|chromosome 7 open reading frame 31##BC043269|C7orf31|136895|chromosome 7 open reading frame 31##AK097248|C7orf31|136895|chromosome 7 open reading frame 31##AK311836|CYCS|54205|cytochrome c, somatic##BC024216|CYCS|54205|cytochrome c, somatic##NM_018947|CYCS|54205|cytochrome c, somatic##NM_004289|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BC068455|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF133059|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##AF134891|NFE2L3|9603|nuclear factor (erythroid-derived 2)-like 3##BX538099|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##BC000506|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29064|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1##M29065|HNRNPA2B1|3181|heterogeneous nuclear ribonucleoprotein A2/B1	0.999178	0.0	denovo_WM_7:-11:0.239	denovo_WM_7:-12:0.239	denovo_WM_7:-13:0.239	denovo_WM_7:-14:0.239
chr11	118806181	118806285	reg1012157.p2	4.219	+	AB094091 NM_182557	-24621	-	NM_032966 X68829	-42133	+	AK291512 NM_001716 BC110352 X68149 AB464488	-51673	+	NM_006760 Y13645 BC113900 AY455312 AB009454	20830	+	AB094092 NM_181721 BC028191 BC125040 BC038969	36245	+	TSC_hg19_v1_chr11_+_118868847 AB094093 NM_198489	62616	+	AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2##AB094092|FOXR1|283150|forkhead box R1##NM_181721|FOXR1|283150|forkhead box R1##BC028191|FOXR1|283150|forkhead box R1##BC125040|FOXR1|283150|forkhead box R1##BC038969|FOXR1|283150|forkhead box R1##AB094093|CCDC84|338657|coiled-coil domain containing 84##NM_198489|CCDC84|338657|coiled-coil domain containing 84	1.078057	0.0	denovo_WM_7:-10:0.552
chr16	14595579	14595725	reg1002382.p2	4.219	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-301454	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-315134	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-430566	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	128376	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	128481	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	131087	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	0.0	0.0	
chr16	16120189	16120323	reg1014354.p2	4.219	+	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	-76892	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-137771	-	AK055715 NM_144600 TSC_hg19_v1_chr16_-_15982448 BC022321 AK056798 AY507846	-137803	-	TSC_hg19_v1_chr16_+_16146613 HQ917065	26362	+	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	197064	-	TSC_hg19_v1_chr16_+_16326401 NM_001004067	206141	+	L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AL832498|FOPNL|123811|FGFR1OP N-terminal like##AK055715|FOPNL|123811|FGFR1OP N-terminal like##NM_144600|FOPNL|123811|FGFR1OP N-terminal like##BC022321|FOPNL|123811|FGFR1OP N-terminal like##AK056798|FOPNL|123811|FGFR1OP N-terminal like##AY507846|FOPNL|123811|FGFR1OP N-terminal like##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001004067|NOMO3|408050|NODAL modulator 3	1.997756	0.0	
chr17	73875030	73875149	reg1011937.p1	4.219	+	TSC_hg19_v1_chr17_-_73874663 AY026763 NM_033452	-438	-	TSC_hg19_v1_chr17_-_73874063 BC017299	-1026	-	AB464357 CU679759 DQ891052 DQ894231 TSC_hg19_v1_chr17_-_73851417 AK293214 AF087866 BC007452 AK057881 BC010616 AK294082 AK294155 AK300875 NM_012478	-23651	-	TSC_hg19_v1_chr17_-_73893051 BC021259 NM_173547	17974	-	BC034460 TSC_hg19_v1_chr17_-_73900966 BC013311 AK313283	25898	-	TSC_hg19_v1_chr17_-_73901175 NM_032478	26076	-	AY026763|TRIM47|91107|tripartite motif containing 47##NM_033452|TRIM47|91107|tripartite motif containing 47##BC017299|TRIM47|91107|tripartite motif containing 47##DQ891052|WBP2|23558|WW domain binding protein 2##DQ894231|WBP2|23558|WW domain binding protein 2##AK293214|WBP2|23558|WW domain binding protein 2##AF087866|WBP2|23558|WW domain binding protein 2##BC007452|WBP2|23558|WW domain binding protein 2##AK057881|WBP2|23558|WW domain binding protein 2##BC010616|WBP2|23558|WW domain binding protein 2##AK294082|WBP2|23558|WW domain binding protein 2##AK294155|WBP2|23558|WW domain binding protein 2##AK300875|WBP2|23558|WW domain binding protein 2##NM_012478|WBP2|23558|WW domain binding protein 2##BC021259|TRIM65|201292|tripartite motif containing 65##NM_173547|TRIM65|201292|tripartite motif containing 65##BC034460|MRPL38|64978|mitochondrial ribosomal protein L38##BC013311|MRPL38|64978|mitochondrial ribosomal protein L38##AK313283|MRPL38|64978|mitochondrial ribosomal protein L38##NM_032478|MRPL38|64978|mitochondrial ribosomal protein L38	0.998997	0.0	denovo_WM_7:58:0.310	denovo_WM_7:59:0.310	denovo_WM_7:60:0.310
chr2	209979702	209979835	reg1014398.p1	4.219	+	BC036811 NM_005048 U25128 HQ257935 AY497546	-708107	+	AK294181 TSC_hg19_v1_chr2_+_209224677	-755143	+	TSC_hg19_v1_chr2_+_209131083 AK127769	-848685	+	TSC_hg19_v1_chr2_+_210288770 NM_001039538 BC038857 BC066648	308986	+	BC110423 TSC_hg19_v1_chr2_+_210444185	464402	+	TSC_hg19_v1_chr2_+_210444369 NM_002374 NM_031845 NM_031847 U01828 AK307603	464626	+	BC036811|PTH2R|5746|parathyroid hormone 2 receptor##NM_005048|PTH2R|5746|parathyroid hormone 2 receptor##U25128|PTH2R|5746|parathyroid hormone 2 receptor##HQ257935|PTH2R|5746|parathyroid hormone 2 receptor##AY497546|PTH2R|5746|parathyroid hormone 2 receptor##AK294181|PTH2R|5746|parathyroid hormone 2 receptor##AK127769|PIKFYVE|200576|phosphoinositide kinase, FYVE finger containing##NM_001039538|MAP2|4133|microtubule-associated protein 2##BC038857|MAP2|4133|microtubule-associated protein 2##BC066648|MAP2|4133|microtubule-associated protein 2##BC110423|MAP2|4133|microtubule-associated protein 2##NM_002374|MAP2|4133|microtubule-associated protein 2##NM_031845|MAP2|4133|microtubule-associated protein 2##NM_031847|MAP2|4133|microtubule-associated protein 2##U01828|MAP2|4133|microtubule-associated protein 2##AK307603|MAP2|4133|microtubule-associated protein 2	0.016146	0.0	
chr2	27810037	27810124	reg1010856.p1	4.219	+	NM_032434 TSC_hg19_v1_chr2_+_27805919 AK303566 BC093041 AK293771 AK316299 BC043221 AK057028 BX647996 AK299818 BC015707 AK294055 AK316011 AB384641	-4145	+	CR749335 NM_032266 BC140828	-10690	+	TSC_hg19_v1_chr2_+_27719749 NM_001486 Z48475 AK298448 AK303784 AK291846 BC130481 BC130483 AK309599 HQ258318	-90347	+	AK316404 NM_001145047 NM_001145048 NM_001145049 AK310340	41439	+	BC066969 NM_001142683 AK124337 BC066936 BC056244 AK125354 NM_024584	41740	-	AK298866 NM_007266 TSC_hg19_v1_chr2_+_27851896 AK312992 AK302131	41799	+	NM_032434|ZNF512|84450|zinc finger protein 512##BC093041|ZNF512|84450|zinc finger protein 512##AK293771|ZNF512|84450|zinc finger protein 512##AK316299|ZNF512|84450|zinc finger protein 512##BC043221|ZNF512|84450|zinc finger protein 512##AK057028|ZNF512|84450|zinc finger protein 512##BX647996|ZNF512|84450|zinc finger protein 512##AK299818|ZNF512|84450|zinc finger protein 512##BC015707|ZNF512|84450|zinc finger protein 512##AK294055|ZNF512|84450|zinc finger protein 512##AK316011|ZNF512|84450|zinc finger protein 512##CR749335|C2orf16|84226|chromosome 2 open reading frame 16##NM_032266|C2orf16|84226|chromosome 2 open reading frame 16##BC140828|C2orf16|84226|chromosome 2 open reading frame 16##NM_001486|GCKR|2646|glucokinase (hexokinase 4) regulator##Z48475|GCKR|2646|glucokinase (hexokinase 4) regulator##AK298448|GCKR|2646|glucokinase (hexokinase 4) regulator##AK303784|GCKR|2646|glucokinase (hexokinase 4) regulator##AK291846|GCKR|2646|glucokinase (hexokinase 4) regulator##BC130481|GCKR|2646|glucokinase (hexokinase 4) regulator##BC130483|GCKR|2646|glucokinase (hexokinase 4) regulator##AK309599|GCKR|2646|glucokinase (hexokinase 4) regulator##HQ258318|GCKR|2646|glucokinase (hexokinase 4) regulator##AK316404|GPN1|11321|GPN-loop GTPase 1##NM_001145047|GPN1|11321|GPN-loop GTPase 1##NM_001145048|GPN1|11321|GPN-loop GTPase 1##NM_001145049|GPN1|11321|GPN-loop GTPase 1##AK310340|GPN1|11321|GPN-loop GTPase 1##BC066969|CCDC121|79635|coiled-coil domain containing 121##NM_001142683|CCDC121|79635|coiled-coil domain containing 121##AK124337|CCDC121|79635|coiled-coil domain containing 121##BC066936|CCDC121|79635|coiled-coil domain containing 121##BC056244|CCDC121|79635|coiled-coil domain containing 121##AK125354|CCDC121|79635|coiled-coil domain containing 121##NM_024584|CCDC121|79635|coiled-coil domain containing 121##AK298866|GPN1|11321|GPN-loop GTPase 1##NM_007266|GPN1|11321|GPN-loop GTPase 1##AK312992|GPN1|11321|GPN-loop GTPase 1##AK302131|GPN1|11321|GPN-loop GTPase 1	0.984172	0.0	denovo_WM_7:62:0.238	denovo_WM_7:63:0.238	denovo_WM_7:64:0.238	denovo_WM_7:65:0.238
chr4	17615820	17616000	reg1002381.p2	4.219	+	TSC_hg19_v1_chr4_+_17579121 AK298613 AK307723 AK225511 BC006199 AK298790	-36780	+	TSC_hg19_v1_chr4_+_17579057 BC065564 CR457128 AK022055	-36834	+	TSC_hg19_v1_chr4_+_17578852 NM_015907	-37028	+	TSC_hg19_v1_chr4_+_17616263 AF318059 AK313928 AF358829 NM_025205 BC011936 AF317680 DQ893391 DQ896713 AF317679 AF317678	356	+	AK308144 NM_015688	167224	-	BC050697 TSC_hg19_v1_chr4_-_17806917	190958	-	AK298613|LAP3|51056|leucine aminopeptidase 3##AK307723|LAP3|51056|leucine aminopeptidase 3##AK225511|LAP3|51056|leucine aminopeptidase 3##BC006199|LAP3|51056|leucine aminopeptidase 3##AK298790|LAP3|51056|leucine aminopeptidase 3##BC065564|LAP3|51056|leucine aminopeptidase 3##CR457128|LAP3|51056|leucine aminopeptidase 3##AK022055|LAP3|51056|leucine aminopeptidase 3##NM_015907|LAP3|51056|leucine aminopeptidase 3##AF318059|MED28|80306|mediator complex subunit 28##AK313928|MED28|80306|mediator complex subunit 28##AF358829|MED28|80306|mediator complex subunit 28##NM_025205|MED28|80306|mediator complex subunit 28##BC011936|MED28|80306|mediator complex subunit 28##AF317680|MED28|80306|mediator complex subunit 28##DQ893391|MED28|80306|mediator complex subunit 28##DQ896713|MED28|80306|mediator complex subunit 28##AF317679|MED28|80306|mediator complex subunit 28##AF317678|MED28|80306|mediator complex subunit 28##AK308144|FAM184B|27146|family with sequence similarity 184, member B##NM_015688|FAM184B|27146|family with sequence similarity 184, member B##BC050697|DCAF16|54876|DDB1 and CUL4 associated factor 16	0.0	0.0	
chr5	32545533	32545614	reg1006626.p1	4.219	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-100637	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-100795	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-142220	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	40083	+	NM_001204376 AK300094 AK308301	165177	+	AK290870 NM_000908 NM_001204375 M59305	165915	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.272839	0.0	denovo_WM_7:-44:0.255
chr11	35934307	35934373	reg1010340.p1	4.218	+	AB529107 CU680538 DQ891061 DQ894241 TSC_hg19_v1_chr11_+_35684686	-249667	+	TSC_hg19_v1_chr11_+_35684427 BC024031 AK074242 AJ249128	-249890	+	TSC_hg19_v1_chr11_+_35684404 BC013166 NM_017583	-249967	+	BC136286 BC143823 BC143824 TSC_hg19_v1_chr11_+_35965585 AK293930 AK075546 AK299186 NM_174902 BC042754	31271	+	TSC_hg19_v1_chr11_-_36310966 AY542164 CU679845 DQ892672 DQ895914 AK290065 AK314477 AK055668 AL136688 BC010892	376613	-	TSC_hg19_v1_chr11_-_36310975 AK295590 AK223213 AK298978 AF161515 NM_001101653 NM_014186	376646	-	DQ891061|TRIM44|54765|tripartite motif containing 44##DQ894241|TRIM44|54765|tripartite motif containing 44##BC024031|TRIM44|54765|tripartite motif containing 44##AK074242|TRIM44|54765|tripartite motif containing 44##AJ249128|TRIM44|54765|tripartite motif containing 44##BC013166|TRIM44|54765|tripartite motif containing 44##NM_017583|TRIM44|54765|tripartite motif containing 44##BC136286|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143823|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC143824|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK293930|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK075546|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AK299186|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##NM_174902|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##BC042754|LDLRAD3|143458|low density lipoprotein receptor class A domain containing 3##AY542164|COMMD9|29099|COMM domain containing 9##DQ892672|COMMD9|29099|COMM domain containing 9##DQ895914|COMMD9|29099|COMM domain containing 9##AK290065|COMMD9|29099|COMM domain containing 9##AK314477|COMMD9|29099|COMM domain containing 9##AK055668|COMMD9|29099|COMM domain containing 9##AL136688|COMMD9|29099|COMM domain containing 9##BC010892|COMMD9|29099|COMM domain containing 9##AK295590|COMMD9|29099|COMM domain containing 9##AK223213|COMMD9|29099|COMM domain containing 9##AK298978|COMMD9|29099|COMM domain containing 9##AF161515|COMMD9|29099|COMM domain containing 9##NM_001101653|COMMD9|29099|COMM domain containing 9##NM_014186|COMMD9|29099|COMM domain containing 9	0.0	0.0	
chr13	81690927	81691072	reg1013341.p2	4.218	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-775935	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-777957	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-1635444	+	TSC_hg19_v1_chr13_-_84456424 BC051738	2765426	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	2765501	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	4682440	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.0	0.0	
chr14	50529553	50529630	reg1008469.p1	4.218	+	AK091232 AX746864 NM_001012706	-55354	-	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-169185	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-169758	+	AF390030 NM_001014830	29769	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	53679	-	TSC_hg19_v1_chr14_-_50697940 L13858 HQ258542 AB463275 BC117261 BC143366 BC143367	168392	-	AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D##L13858|SOS2|6655|son of sevenless homolog 2 (Drosophila)##HQ258542|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC117261|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143366|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC143367|SOS2|6655|son of sevenless homolog 2 (Drosophila)	0.0	0.0	
chr18	39694451	39694596	reg1015292.p1	4.218	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-159290	+	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	-159324	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2314255	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1001046	-	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	1162906	-	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	2565591	+	BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK090603|LOC647946|647946|uncharacterized LOC647946##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1	0.907114	0.986893	CTCF.p2:-35:0.987	denovo_WM_7:59:0.263
chr2	112844980	112845160	reg1014581.p1	4.218	+	TSC_hg19_v1_chr2_+_112813153 AK290294 AY429534 AY429535	-31883	+	TSC_hg19_v1_chr2_+_112812903 BC115373	-32123	+	NM_032824 AK027587 TSC_hg19_v1_chr2_+_112812871	-32229	+	TSC_hg19_v1_chr2_+_112895958 AK094759 NM_001128165 NM_153214 BC035784	50919	+	TSC_hg19_v1_chr2_+_112896040 BC126986 BC126987	51029	+	BC032001 AK315329 AF334161 NM_032494	167562	-	AK290294|TMEM87B|84910|transmembrane protein 87B##AY429534|TMEM87B|84910|transmembrane protein 87B##AY429535|TMEM87B|84910|transmembrane protein 87B##BC115373|TMEM87B|84910|transmembrane protein 87B##NM_032824|TMEM87B|84910|transmembrane protein 87B##AK027587|TMEM87B|84910|transmembrane protein 87B##AK094759|FBLN7|129804|fibulin 7##NM_001128165|FBLN7|129804|fibulin 7##NM_153214|FBLN7|129804|fibulin 7##BC035784|FBLN7|129804|fibulin 7##BC126986|FBLN7|129804|fibulin 7##BC126987|FBLN7|129804|fibulin 7##BC032001|ZC3H8|84524|zinc finger CCCH-type containing 8##AK315329|ZC3H8|84524|zinc finger CCCH-type containing 8##AF334161|ZC3H8|84524|zinc finger CCCH-type containing 8##NM_032494|ZC3H8|84524|zinc finger CCCH-type containing 8	0.0	0.0	
chr3	187535746	187535875	reg1012903.p2	4.218	+	U00115 NM_001706	-72317	-	BC142705 BC150184 Z21943 AK304325 AK308162 TSC_hg19_v1_chr3_-_187463257 BC146796	-72566	-	S67779 NM_001130845	-81545	-	AL833171 TSC_hg19_v1_chr3_+_187870843	335017	+	TSC_hg19_v1_chr3_+_187871663 NM_001167672 AK304035	335825	+	TSC_hg19_v1_chr3_-_187871925 BC042414	336060	-	U00115|BCL6|604|B-cell CLL/lymphoma 6##NM_001706|BCL6|604|B-cell CLL/lymphoma 6##BC142705|BCL6|604|B-cell CLL/lymphoma 6##BC150184|BCL6|604|B-cell CLL/lymphoma 6##Z21943|BCL6|604|B-cell CLL/lymphoma 6##AK304325|BCL6|604|B-cell CLL/lymphoma 6##AK308162|BCL6|604|B-cell CLL/lymphoma 6##BC146796|BCL6|604|B-cell CLL/lymphoma 6##S67779|BCL6|604|B-cell CLL/lymphoma 6##NM_001130845|BCL6|604|B-cell CLL/lymphoma 6##AL833171|LPP|4026|LIM domain containing preferred translocation partner in lipoma##NM_001167672|LPP|4026|LIM domain containing preferred translocation partner in lipoma##AK304035|LPP|4026|LIM domain containing preferred translocation partner in lipoma##BC042414|LPP-AS2|339929|LPP antisense RNA 2 (non-protein coding)	0.237502	0.0	denovo_WM_7:64:0.238
chr3	79057884	79057978	reg1010355.p1	4.218	+	TSC_hg19_v1_chr3_-_78666943 AK025535	-390946	-	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	-1968651	+	TSC_hg19_v1_chr3_-_75834698 AK123776	-3223229	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	10656	-	NM_002941	759127	-	TSC_hg19_v1_chr3_-_81810692 EU176342 L07956	2752766	-	AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##AK123776|ZNF717|100131827|zinc finger protein 717##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##EU176342|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##L07956|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1	0.990009	0.0	denovo_WM_7:-14:0.243	denovo_WM_7:-15:0.243	denovo_WM_7:-16:0.243	denovo_WM_7:-17:0.243
chr5	25544890	25544983	reg1016050.p1	4.218	+	NM_006727	-899852	-	DQ388610 NM_020227 AK301776	-2037193	+	L33477 NM_004061	-2691206	-	BC107594 BC109384 BC113745 AB035302 AK307779 NM_016279 AK308697	1493735	-	TSC_hg19_v1_chr5_+_27472410 BC039509 BC046201 BC101438 BC101441 BC101982 BC122523	1927467	+	NM_004932 TSC_hg19_v1_chr5_+_31193792 AK291290	5648860	+	NM_006727|CDH10|1008|cadherin 10, type 2 (T2-cadherin)##DQ388610|PRDM9|56979|PR domain containing 9##NM_020227|PRDM9|56979|PR domain containing 9##AK301776|PRDM9|56979|PR domain containing 9##L33477|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_004061|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##BC107594|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC109384|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC113745|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AB035302|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK307779|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##NM_016279|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##AK308697|CDH9|1007|cadherin 9, type 2 (T1-cadherin)##BC039509|LOC643401|643401|uncharacterized LOC643401##BC046201|LOC643401|643401|uncharacterized LOC643401##BC101438|LOC643401|643401|uncharacterized LOC643401##BC101982|LOC643401|643401|uncharacterized LOC643401##BC122523|LOC643401|643401|uncharacterized LOC643401##NM_004932|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)##AK291290|CDH6|1004|cadherin 6, type 2, K-cadherin (fetal kidney)	0.0	0.140554	
chr5	78091748	78091834	reg1011851.p1	4.218	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-147225	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-246768	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-285595	-	J05225 TSC_hg19_v1_chr5_-_78281101	189297	-	AK290865 TSC_hg19_v1_chr5_-_78281134	189342	-	TSC_hg19_v1_chr5_-_78281142 AK314903	189355	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	0.0	0.0	
chr7	102073333	102073449	reg1012211.p2	4.218	+	NM_024653 TSC_hg19_v1_chr7_+_102036839 AK023964 BC014298 DQ893168 DQ896466 AK294664	-36549	+	TSC_hg19_v1_chr7_+_102023018 AK098134	-50358	+	TSC_hg19_v1_chr7_+_102004338 BC048257 BC066362	-69039	+	TSC_hg19_v1_chr7_+_102073995 NM_001126340 NM_032831	586	+	TSC_hg19_v1_chr7_+_102074021 AK056497 AK027639 AK300574	650	+	TSC_hg19_v1_chr7_-_102105305 CU678220 BC002820 BC017096	31842	-	NM_024653|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK023964|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##BC014298|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ893168|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##DQ896466|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##AK294664|PRKRIP1|79706|PRKR interacting protein 1 (IL11 inducible)##NM_001126340|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##NM_032831|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK056497|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK027639|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##AK300574|ORAI2|80228|ORAI calcium release-activated calcium modulator 2##BC002820|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)##BC017096|ALKBH4|54784|alkB, alkylation repair homolog 4 (E. coli)	0.988503	0.0	
chr8	30579512	30579645	reg1014230.p2	4.218	+	S67861 TSC_hg19_v1_chr8_-_30515718 X63469 BC030572 BC001775 NM_002095	-63842	-	NM_001206847	-83462	+	NM_001008710 NM_001008711 NM_001008712 NM_006867 AK304858 D84107 D84108 D84109 D84110 TSC_hg19_v1_chr8_+_30242056 BC003608	-337569	+	BC035691 TSC_hg19_v1_chr8_-_30585320 X15722 AB519179 AB519180 AB519181 AF228704 CU686724	5708	-	BC069244 TSC_hg19_v1_chr8_-_30585478 NM_000637 NM_001195102 NM_001195103 NM_001195104	5888	-	TSC_hg19_v1_chr8_+_30601674 NM_005671 AK296600 BC020694 D83767 CU676648 AY302140	22108	+	S67861|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##X63469|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC030572|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##BC001775|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_002095|GTF2E2|2961|general transcription factor IIE, polypeptide 2, beta 34kDa##NM_001206847|LOC100507341|100507341|uncharacterized LOC100507341##NM_001008710|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008711|RBPMS|11030|RNA binding protein with multiple splicing##NM_001008712|RBPMS|11030|RNA binding protein with multiple splicing##NM_006867|RBPMS|11030|RNA binding protein with multiple splicing##AK304858|RBPMS|11030|RNA binding protein with multiple splicing##D84107|RBPMS|11030|RNA binding protein with multiple splicing##D84108|RBPMS|11030|RNA binding protein with multiple splicing##D84109|RBPMS|11030|RNA binding protein with multiple splicing##D84110|RBPMS|11030|RNA binding protein with multiple splicing##BC003608|RBPMS|11030|RNA binding protein with multiple splicing##BC035691|GSR|2936|glutathione reductase##X15722|GSR|2936|glutathione reductase##AB519179|GSR|2936|glutathione reductase##AB519180|GSR|2936|glutathione reductase##AB519181|GSR|2936|glutathione reductase##AF228704|GSR|2936|glutathione reductase##BC069244|GSR|2936|glutathione reductase##NM_000637|GSR|2936|glutathione reductase##NM_001195102|GSR|2936|glutathione reductase##NM_001195103|GSR|2936|glutathione reductase##NM_001195104|GSR|2936|glutathione reductase##NM_005671|UBXN8|7993|UBX domain protein 8##AK296600|UBXN8|7993|UBX domain protein 8##BC020694|UBXN8|7993|UBX domain protein 8##D83767|UBXN8|7993|UBX domain protein 8##AY302140|UBXN8|7993|UBX domain protein 8	0.995608	0.0	denovo_WM_7:-40:0.982
chr9	134270283	134270463	reg1008649.p1	4.218	+	TSC_hg19_v1_chr9_+_134269515 BC002872	-807	+	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	-105145	+	BC049388 NM_033387 AK095423	-118454	-	NM_013318 TSC_hg19_v1_chr9_+_134305488	35109	+	CU678266 TSC_hg19_v1_chr9_+_134305548	35167	+	TSC_hg19_v1_chr9_+_134348954 BX647528	78650	+	BC002872|PRRC2B|84726|proline-rich coiled-coil 2B##AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B##BX647528|PRRC2B|84726|proline-rich coiled-coil 2B	1.397472	0.0	denovo_WM_7:-16:0.355	denovo_WM_7:-17:0.356	denovo_WM_7:-18:0.232
chr1	117280619	117280770	reg1008451.p2	4.217	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-70311	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	-167017	-	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	-167079	-	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	16413	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	171948	+	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	263711	+	NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule	0.0	0.0	
chr1	155828173	155828268	reg1000490.p1	4.217	+	TSC_hg19_v1_chr1_-_155827021 AB195687 AB195688	-1168	-	TSC_hg19_v1_chr1_-_155827003 AB232668 AY335492 BC114629 BC115703 BX537764 NM_001037533 NM_032292 AY335490 BX648043 AK098734 BX648802	-1244	-	TSC_hg19_v1_chr1_-_155774769 AK315191 BC071650	-53429	-	NM_152280 TSC_hg19_v1_chr1_+_155829357 BC039205 BC013690 D38522 AK296378 CR749792 AK027540 AK074931 BC004291 CU691678	1185	+	TSC_hg19_v1_chr1_+_155853548 AK026178	25353	+	BC104186 BC104187 AF084462 U71203 U78165 Y07566 TSC_hg19_v1_chr1_-_155881141	52884	-	AB195687|GON4L|54856|gon-4-like (C. elegans)##AB195688|GON4L|54856|gon-4-like (C. elegans)##AB232668|GON4L|54856|gon-4-like (C. elegans)##AY335492|GON4L|54856|gon-4-like (C. elegans)##BC114629|GON4L|54856|gon-4-like (C. elegans)##BC115703|GON4L|54856|gon-4-like (C. elegans)##BX537764|GON4L|54856|gon-4-like (C. elegans)##NM_001037533|GON4L|54856|gon-4-like (C. elegans)##NM_032292|GON4L|54856|gon-4-like (C. elegans)##AY335490|GON4L|54856|gon-4-like (C. elegans)##BX648043|GON4L|54856|gon-4-like (C. elegans)##AK098734|GON4L|54856|gon-4-like (C. elegans)##BX648802|GON4L|54856|gon-4-like (C. elegans)##AK315191|GON4L|54856|gon-4-like (C. elegans)##BC071650|GON4L|54856|gon-4-like (C. elegans)##NM_152280|SYT11|23208|synaptotagmin XI##BC039205|SYT11|23208|synaptotagmin XI##BC013690|SYT11|23208|synaptotagmin XI##D38522|SYT11|23208|synaptotagmin XI##AK296378|SYT11|23208|synaptotagmin XI##CR749792|SYT11|23208|synaptotagmin XI##AK027540|SYT11|23208|synaptotagmin XI##AK074931|SYT11|23208|synaptotagmin XI##BC004291|SYT11|23208|synaptotagmin XI##AK026178|SYT11|23208|synaptotagmin XI##BC104186|RIT1|6016|Ras-like without CAAX 1##BC104187|RIT1|6016|Ras-like without CAAX 1##AF084462|RIT1|6016|Ras-like without CAAX 1##U71203|RIT1|6016|Ras-like without CAAX 1##U78165|RIT1|6016|Ras-like without CAAX 1##Y07566|RIT1|6016|Ras-like without CAAX 1	0.0	0.0	
chr11	6251168	6251281	reg1012502.p1	4.217	+	BC031612 NM_173525	-24427	+	BC137225 NM_001005178	-30810	+	NM_001004052 BC136732 BC136733	-59628	-	AB051546 TSC_hg19_v1_chr11_-_6255867 BC030825 AK291702	4634	-	TSC_hg19_v1_chr11_-_6255873 AL136723	4652	-	TSC_hg19_v1_chr11_-_6255892 AK056468 NM_001098794 NM_032127	4697	-	BC031612|C11orf42|160298|chromosome 11 open reading frame 42##NM_173525|C11orf42|160298|chromosome 11 open reading frame 42##BC137225|OR52W1|120787|olfactory receptor, family 52, subfamily W, member 1##NM_001005178|OR52W1|120787|olfactory receptor, family 52, subfamily W, member 1##NM_001004052|OR52B2|255725|olfactory receptor, family 52, subfamily B, member 2##BC136732|OR52B2|255725|olfactory receptor, family 52, subfamily B, member 2##BC136733|OR52B2|255725|olfactory receptor, family 52, subfamily B, member 2##AB051546|FAM160A2|84067|family with sequence similarity 160, member A2##BC030825|FAM160A2|84067|family with sequence similarity 160, member A2##AK291702|FAM160A2|84067|family with sequence similarity 160, member A2##AL136723|FAM160A2|84067|family with sequence similarity 160, member A2##AK056468|FAM160A2|84067|family with sequence similarity 160, member A2##NM_001098794|FAM160A2|84067|family with sequence similarity 160, member A2##NM_032127|FAM160A2|84067|family with sequence similarity 160, member A2	0.999062	0.0	denovo_WM_7:-7:0.314	denovo_WM_7:-8:0.314	denovo_WM_7:-9:0.314
chr11	63745001	63745067	reg1012831.p3	4.217	+	TSC_hg19_v1_chr11_+_63742069 BC063025 NM_004074 BC000501 AK311934 BT009803 CR407687	-2951	+	TSC_hg19_v1_chr11_+_63706473 NM_024771 AK023910 AK300451 AK303557 JF263566 BC041617 BC052298	-38550	+	TSC_hg19_v1_chr11_-_63684632 AB593132	-60395	-	AK098029 NM_017670	8290	+	TSC_hg19_v1_chr11_+_63753896 AK000120	8827	+	BC010368 BC107701 TSC_hg19_v1_chr11_+_63753917 AK303228 AF161381 AK225133 AL096714 AK091830 BC007519 AY177200 CU675687 CU679683	8886	+	BC063025|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_004074|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BC000501|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##AK311934|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BT009803|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##CR407687|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_024771|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK023910|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK300451|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK303557|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##JF263566|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC041617|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC052298|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AB593132|RCOR2|283248|REST corepressor 2##AK098029|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##NM_017670|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK000120|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC010368|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC107701|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK303228|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AF161381|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK225133|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AL096714|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK091830|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC007519|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AY177200|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1	0.999365	0.0	
chr18	657271	657404	reg1014599.p2	4.217	+	DQ980621 NM_199167 AF395889 D63813	-40642	+	BC025381 NM_014410 AK299319	-60328	+	BC029515 NM_004066 U03270 AK312047 CU688680 DQ890970 DQ894144	-76955	+	TSC_hg19_v1_chr18_+_657615 NM_001071 BC083512 AK223372 BC013919	209	+	AB062290 TSC_hg19_v1_chr18_+_657656 AK314140 X02308	311	+	BC002567 TSC_hg19_v1_chr18_+_657708 BC018858 AK292620 AB590362 DQ892149 AB077207 AB077208 BT006811	374	+	DQ980621|CLUL1|27098|clusterin-like 1 (retinal)##NM_199167|CLUL1|27098|clusterin-like 1 (retinal)##AF395889|CLUL1|27098|clusterin-like 1 (retinal)##D63813|CLUL1|27098|clusterin-like 1 (retinal)##BC025381|CLUL1|27098|clusterin-like 1 (retinal)##NM_014410|CLUL1|27098|clusterin-like 1 (retinal)##AK299319|CLUL1|27098|clusterin-like 1 (retinal)##BC029515|CETN1|1068|centrin, EF-hand protein, 1##NM_004066|CETN1|1068|centrin, EF-hand protein, 1##U03270|CETN1|1068|centrin, EF-hand protein, 1##AK312047|CETN1|1068|centrin, EF-hand protein, 1##DQ890970|CETN1|1068|centrin, EF-hand protein, 1##DQ894144|CETN1|1068|centrin, EF-hand protein, 1##NM_001071|TYMS|7298|thymidylate synthetase##BC083512|TYMS|7298|thymidylate synthetase##AK223372|TYMS|7298|thymidylate synthetase##BC013919|TYMS|7298|thymidylate synthetase##AB062290|TYMS|7298|thymidylate synthetase##AK314140|TYMS|7298|thymidylate synthetase##X02308|TYMS|7298|thymidylate synthetase##BC002567|TYMS|7298|thymidylate synthetase##BC018858|TYMS|7298|thymidylate synthetase##AK292620|TYMS|7298|thymidylate synthetase##DQ892149|TYMS|7298|thymidylate synthetase##AB077207|TYMS|7298|thymidylate synthetase##AB077208|TYMS|7298|thymidylate synthetase##BT006811|TYMS|7298|thymidylate synthetase	0.0	0.0	
chr20	46133107	46133252	reg1001577.p1	4.217	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-2495	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-2557	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-147691	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	281573	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	282139	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1311107	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1.115513	0.0	
chr4	39950943	39951120	reg1007626.p1	4.217	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-251227	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-310475	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-421405	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	28307	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	28562	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	107501	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.993439	0.0	
chr5	173336270	173336387	reg1014683.p1	4.217	+	TSC_hg19_v1_chr5_+_173315343 NM_030627	-20950	+	TSC_hg19_v1_chr5_-_173043654 BC007436 NM_001159651 NM_138369	-292655	-	TSC_hg19_v1_chr5_-_173043624 AK301982	-292700	-	NM_001144954 BC092489 BC066964 BC034971 BC047225 BC053953 BC057842	79862	+	TSC_hg19_v1_chr5_+_173472722 AK315952 AK297196 AK312359 BC002619 NM_015980 AK294383 BC018873	136383	+	TSC_hg19_v1_chr5_+_173472748 AF113537 AF123767 AF133422	136424	+	NM_030627|CPEB4|80315|cytoplasmic polyadenylation element binding protein 4##BC007436|BOD1|91272|biorientation of chromosomes in cell division 1##NM_001159651|BOD1|91272|biorientation of chromosomes in cell division 1##NM_138369|BOD1|91272|biorientation of chromosomes in cell division 1##AK301982|BOD1|91272|biorientation of chromosomes in cell division 1##NM_001144954|C5orf47|133491|chromosome 5 open reading frame 47##BC092489|C5orf47|133491|chromosome 5 open reading frame 47##BC066964|C5orf47|133491|chromosome 5 open reading frame 47##BC034971|C5orf47|133491|chromosome 5 open reading frame 47##BC047225|C5orf47|133491|chromosome 5 open reading frame 47##BC053953|C5orf47|133491|chromosome 5 open reading frame 47##BC057842|C5orf47|133491|chromosome 5 open reading frame 47##AK315952|HMP19|51617|HMP19 protein##AK297196|HMP19|51617|HMP19 protein##AK312359|HMP19|51617|HMP19 protein##BC002619|HMP19|51617|HMP19 protein##NM_015980|HMP19|51617|HMP19 protein##AK294383|HMP19|51617|HMP19 protein##BC018873|HMP19|51617|HMP19 protein##AF113537|HMP19|51617|HMP19 protein##AF123767|HMP19|51617|HMP19 protein##AF133422|HMP19|51617|HMP19 protein	0.106133	0.0	
chr5	89847358	89847463	reg1011368.p1	4.217	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-22044	-	NM_006467 AK295434 U93868	-76708	+	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	-76832	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	7204	+	AK091866 TSC_hg19_v1_chr5_-_90610220	762835	-	TSC_hg19_v1_chr5_+_90676181 BC043415	828752	+	BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716	0.808323	0.0	denovo_WM_7:-5:0.784
chr1	17003707	17003868	reg1006223.p2	4.216	+	AK123337 TSC_hg19_v1_chr1_-_16971178	-32610	-	TSC_hg19_v1_chr1_-_16971175 AK090414	-32621	-	TSC_hg19_v1_chr1_-_16940046 AK123260 AY894575 NM_017940 BC066930 BC010124 BC082236 BC110431 AK055895 BC093404	-63891	-	TSC_hg19_v1_chr1_+_17248425 NM_014675	244647	+	TSC_hg19_v1_chr1_-_17307116 BC028033 AK222751 BC015039 NM_001135248 NM_002403	303362	-	AK301655 NM_001135247 NM_017459	304289	-	AK123337|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK090414|CROCCP2|84809|ciliary rootlet coiled-coil, rootletin pseudogene 2##AK123260|NBPF1|55672|neuroblastoma breakpoint family, member 1##AY894575|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_017940|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC066930|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC010124|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC110431|NBPF1|55672|neuroblastoma breakpoint family, member 1##AK055895|NBPF1|55672|neuroblastoma breakpoint family, member 1##BC093404|NBPF1|55672|neuroblastoma breakpoint family, member 1##NM_014675|CROCC|9696|ciliary rootlet coiled-coil, rootletin##BC028033|MFAP2|4237|microfibrillar-associated protein 2##AK222751|MFAP2|4237|microfibrillar-associated protein 2##BC015039|MFAP2|4237|microfibrillar-associated protein 2##NM_001135248|MFAP2|4237|microfibrillar-associated protein 2##NM_002403|MFAP2|4237|microfibrillar-associated protein 2##AK301655|MFAP2|4237|microfibrillar-associated protein 2##NM_001135247|MFAP2|4237|microfibrillar-associated protein 2##NM_017459|MFAP2|4237|microfibrillar-associated protein 2	0.999592	0.0	
chr14	58759784	58759867	reg1011320.p1	4.216	+	TSC_hg19_v1_chr14_+_58711605 BC038990 D00762 DQ892645 DQ895883 AB464085 BT006711 BT019715 CR456933 CU688640	-48195	+	TSC_hg19_v1_chr14_+_58711570 AK315158 BC029402 BC005265	-48251	+	TSC_hg19_v1_chr14_+_58711551 NM_002788 NM_152132	-48320	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	5008	-	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	5416	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	5493	+	BC038990|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##D00762|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ892645|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ895883|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT006711|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT019715|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##CR456933|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK315158|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC029402|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC005265|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_002788|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_152132|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)	1.010762	0.0	denovo_WM_7:46:0.793
chr21	18800344	18800473	reg1003049.p1	4.216	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-1697867	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-1698083	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-2363191	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	84755	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	84963	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	184732	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	0.0	0.0	
chr3	4548735	4548847	reg1012204.p1	4.216	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-13595	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-13663	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-13760	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	472325	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	472390	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	472563	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.99384	0.0	denovo_WM_7:0:0.248	denovo_WM_7:1:0.248	denovo_WM_7:2:0.248	denovo_WM_7:3:0.248
chr7	43691252	43691412	reg1013028.p1	4.216	+	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	-68638	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-539106	+	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	-719363	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	77762	-	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	106935	+	TSC_hg19_v1_chr7_+_43798283 AK291862 X93086 U34877	106984	+	NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32##BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A##AK291862|BLVRA|644|biliverdin reductase A##X93086|BLVRA|644|biliverdin reductase A##U34877|BLVRA|644|biliverdin reductase A	0.996559	0.0	
chr7	74180965	74181138	reg1001744.p2	4.216	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-108929	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-109007	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-109030	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	7301	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	86788	-	TSC_hg19_v1_chr7_-_74306679 BC002581	125624	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.0	0.0	
chr12	105622467	105622574	reg1013903.p1	4.215	+	TSC_hg19_v1_chr12_+_105501556 AB385420	-120953	+	TSC_hg19_v1_chr12_+_105501554 BC012556 BC104992 BC104994 BC143373	-120971	+	TSC_hg19_v1_chr12_+_105501539 BC110850	-120980	+	NM_001251905	4662	-	CU689714 AB527678 DQ892107 DQ895301 TSC_hg19_v1_chr12_-_105629989 AK001521 AK290562 AK297100 BC033731 BC028008 AY113704 NM_001251904 NM_018171	7390	-	TSC_hg19_v1_chr12_+_105724468 BC013920 NM_001145199 BC067897 BC045812 BC061920 AK056999 AJ311377	101951	+	BC012556|KIAA1033|23325|KIAA1033##BC104992|KIAA1033|23325|KIAA1033##BC104994|KIAA1033|23325|KIAA1033##BC143373|KIAA1033|23325|KIAA1033##BC110850|KIAA1033|23325|KIAA1033##NM_001251905|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ892107|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##DQ895301|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK001521|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK290562|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AK297100|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC033731|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC028008|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##AY113704|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_001251904|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##NM_018171|APPL2|55198|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2##BC013920|C12orf75|387882|chromosome 12 open reading frame 75##NM_001145199|C12orf75|387882|chromosome 12 open reading frame 75##BC067897|C12orf75|387882|chromosome 12 open reading frame 75##BC045812|C12orf75|387882|chromosome 12 open reading frame 75##BC061920|C12orf75|387882|chromosome 12 open reading frame 75##AK056999|C12orf75|387882|chromosome 12 open reading frame 75##AJ311377|C12orf75|387882|chromosome 12 open reading frame 75	0.0	0.0	
chr1	77999534	77999672	reg1013790.p2	4.215	+	AY171600 BC033896 NM_012093	-251317	+	TSC_hg19_v1_chr1_+_77747727 BC036666 AK090967 AX746708	-251869	+	TSC_hg19_v1_chr1_+_77747603 AF445193 NM_174858	-251972	+	TSC_hg19_v1_chr1_-_78148354 BX641096 BX641096 AK310514 BX641001 BX641001 NM_015534	148752	-	TSC_hg19_v1_chr1_-_78149099 BC035079 BC035079	149595	-	TSC_hg19_v1_chr1_-_78225538 BC016663 AK308402 AB029020 AF383172 AF383173 AK022864 NM_015017 NM_201624 NM_201626	225849	-	AY171600|AK5|26289|adenylate kinase 5##BC033896|AK5|26289|adenylate kinase 5##NM_012093|AK5|26289|adenylate kinase 5##BC036666|AK5|26289|adenylate kinase 5##AK090967|AK5|26289|adenylate kinase 5##AF445193|AK5|26289|adenylate kinase 5##NM_174858|AK5|26289|adenylate kinase 5##BX641096|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641096|ZZZ3|26009|zinc finger, ZZ-type containing 3##AK310514|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641001|ZZZ3|26009|zinc finger, ZZ-type containing 3##BX641001|ZZZ3|26009|zinc finger, ZZ-type containing 3##NM_015534|ZZZ3|26009|zinc finger, ZZ-type containing 3##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BC035079|ZZZ3|26009|zinc finger, ZZ-type containing 3##BC016663|USP33|23032|ubiquitin specific peptidase 33##AK308402|USP33|23032|ubiquitin specific peptidase 33##AB029020|USP33|23032|ubiquitin specific peptidase 33##AF383172|USP33|23032|ubiquitin specific peptidase 33##AF383173|USP33|23032|ubiquitin specific peptidase 33##AK022864|USP33|23032|ubiquitin specific peptidase 33##NM_015017|USP33|23032|ubiquitin specific peptidase 33##NM_201624|USP33|23032|ubiquitin specific peptidase 33##NM_201626|USP33|23032|ubiquitin specific peptidase 33	0.957925	0.889093	denovo_WM_7:36:0.505	CTCF.p2:-36:0.889	denovo_WM_7:37:0.299
chr2	101011177	101011294	reg1007090.p1	4.215	+	DQ020495 NM_198461	-72041	-	BC036895 TSC_hg19_v1_chr2_-_100759026 NM_002285	-252232	-	TSC_hg19_v1_chr2_-_100722359 AK297407 AK092327 AX747484	-288777	-	TSC_hg19_v1_chr2_-_101034114 BC010441 AF033827 NM_004854	22862	-	AB164464 NM_001011717	75708	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	168201	+	DQ020495|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##NM_198461|LONRF2|164832|LON peptidase N-terminal domain and ring finger 2##BC036895|AFF3|3899|AF4/FMR2 family, member 3##NM_002285|AFF3|3899|AF4/FMR2 family, member 3##AK297407|AFF3|3899|AF4/FMR2 family, member 3##AK092327|AFF3|3899|AF4/FMR2 family, member 3##BC010441|CHST10|9486|carbohydrate sulfotransferase 10##AF033827|CHST10|9486|carbohydrate sulfotransferase 10##NM_004854|CHST10|9486|carbohydrate sulfotransferase 10##AB164464|NMS|129521|neuromedin S##NM_001011717|NMS|129521|neuromedin S##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3	0.994101	0.0	denovo_WM_7:-38:0.814
chr6	131109245	131109394	reg1010370.p1	4.215	+	AB052099 NM_052913	-351058	+	AK091882 AX747235 NM_001017373	-565221	-	AB527209 CU688766 BC029851 BC119757 BC119758 BC127653 BC127654 NM_152552	-572864	-	BC113027 NM_001195597 AK091900 AX747243 BC101422 BC101423 BC101424 BC101425 BC113026 TSC_hg19_v1_chr6_+_131148577	39243	+	TSC_hg19_v1_chr6_-_131291480 AK307764 NM_001199389	182232	-	CR749262 CR936793 NM_001252660	212568	-	AB052099|TMEM200A|114801|transmembrane protein 200A##NM_052913|TMEM200A|114801|transmembrane protein 200A##AK091882|SAMD3|154075|sterile alpha motif domain containing 3##NM_001017373|SAMD3|154075|sterile alpha motif domain containing 3##BC029851|SAMD3|154075|sterile alpha motif domain containing 3##BC119757|SAMD3|154075|sterile alpha motif domain containing 3##BC119758|SAMD3|154075|sterile alpha motif domain containing 3##BC127653|SAMD3|154075|sterile alpha motif domain containing 3##BC127654|SAMD3|154075|sterile alpha motif domain containing 3##NM_152552|SAMD3|154075|sterile alpha motif domain containing 3##BC113027|LOC100507203|100507203|uncharacterized LOC100507203##NM_001195597|LOC100507203|100507203|uncharacterized LOC100507203##AK091900|LOC100507203|100507203|uncharacterized LOC100507203##BC101422|LOC100507203|100507203|uncharacterized LOC100507203##BC101423|LOC100507203|100507203|uncharacterized LOC100507203##BC101424|LOC100507203|100507203|uncharacterized LOC100507203##BC101425|LOC100507203|100507203|uncharacterized LOC100507203##BC113026|LOC100507203|100507203|uncharacterized LOC100507203##AK307764|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001199389|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR749262|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##CR936793|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2##NM_001252660|EPB41L2|2037|erythrocyte membrane protein band 4.1-like 2	0.983726	0.0	denovo_WM_7:-42:0.454	denovo_WM_7:-43:0.454
chrX	41371846	41371962	reg1013302.p2	4.215	+	AJ278865 AF254868 NM_022567	-65205	+	AK304661 TSC_hg19_v1_chrX_+_41193866 AK127902	-178039	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	-178447	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	176363	+	BC070180 NM_080817 AK122626 AK313702 AL832460	211516	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	410421	-	AJ278865|NYX|60506|nyctalopin##AF254868|NYX|60506|nyctalopin##NM_022567|NYX|60506|nyctalopin##AK304661|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK127902|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	0.999671	0.0	
chr1	226605748	226605855	reg1011440.p2	4.214	+	TSC_hg19_v1_chr1_-_226595798 NM_001618	-9998	-	AK303340 M32721 TSC_hg19_v1_chr1_-_226595791	-10011	-	BC037545 TSC_hg19_v1_chr1_-_226595774 BC008660 BC014206	-10024	-	AL137507 NM_001003665 TSC_hg19_v1_chr1_+_226736500	130700	+	AM393750 BC141659 TSC_hg19_v1_chr1_+_226736630	130816	+	BC015009 NM_002221 TSC_hg19_v1_chr1_-_226926982	321137	-	NM_001618|PARP1|142|poly (ADP-ribose) polymerase 1##AK303340|PARP1|142|poly (ADP-ribose) polymerase 1##M32721|PARP1|142|poly (ADP-ribose) polymerase 1##BC037545|PARP1|142|poly (ADP-ribose) polymerase 1##BC008660|PARP1|142|poly (ADP-ribose) polymerase 1##BC014206|PARP1|142|poly (ADP-ribose) polymerase 1##AL137507|C1orf95|375057|chromosome 1 open reading frame 95##NM_001003665|C1orf95|375057|chromosome 1 open reading frame 95##AM393750|C1orf95|375057|chromosome 1 open reading frame 95##BC141659|C1orf95|375057|chromosome 1 open reading frame 95##BC015009|ITPKB|3707|inositol-trisphosphate 3-kinase B##NM_002221|ITPKB|3707|inositol-trisphosphate 3-kinase B	0.850251	0.0	denovo_WM_7:-16:0.627
chr1	236320089	236320189	reg1011499.p1	4.214	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-14263	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-91399	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-91641	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	125049	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	125177	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	237544	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.0	0.0	
chr14	77392979	77393159	reg1007461.p1	4.214	+	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-100274	+	TSC_hg19_v1_chr14_-_77279257 NM_015305	-113807	-	AB018302 AL137268 TSC_hg19_v1_chr14_-_77279205 AK301069 BC028714	-113859	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	101615	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	101991	-	AK124327 TSC_hg19_v1_chr14_-_77542533	149464	-	AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_015305|ANGEL1|23357|angel homolog 1 (Drosophila)##AB018302|ANGEL1|23357|angel homolog 1 (Drosophila)##AL137268|ANGEL1|23357|angel homolog 1 (Drosophila)##AK301069|ANGEL1|23357|angel homolog 1 (Drosophila)##BC028714|ANGEL1|23357|angel homolog 1 (Drosophila)##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like	1.644566	0.0	denovo_WM_7:40:0.427
chr2	109402582	109402688	reg1011127.p1	4.214	+	TSC_hg19_v1_chr2_+_109384621 AY170822	-17952	+	TSC_hg19_v1_chr2_+_109335970 D42063 NM_006267	-66697	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	-131147	+	TSC_hg19_v1_chr2_+_109403228 BC050579 AK125199 AK057307 NM_144978 BC015847 BC038421	567	+	TSC_hg19_v1_chr2_-_109605623 AK296936	202984	-	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	203112	-	AY170822|RANBP2|5903|RAN binding protein 2##D42063|RANBP2|5903|RAN binding protein 2##NM_006267|RANBP2|5903|RAN binding protein 2##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3##BC050579|CCDC138|165055|coiled-coil domain containing 138##AK125199|CCDC138|165055|coiled-coil domain containing 138##AK057307|CCDC138|165055|coiled-coil domain containing 138##NM_144978|CCDC138|165055|coiled-coil domain containing 138##BC015847|CCDC138|165055|coiled-coil domain containing 138##BC038421|CCDC138|165055|coiled-coil domain containing 138##AK296936|EDAR|10913|ectodysplasin A receptor##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor	1.015846	0.0	
chr5	49741208	49741324	reg1013350.p1	4.214	+	TSC_hg19_v1_chr5_-_49737229 NM_198449	-4023	-	AK300860 TSC_hg19_v1_chr5_-_49737200 BC059398	-4067	-	AF488549 NM_021072	-4045047	-	AK298680 AK314466 BC105789 NM_001178055	220466	+	NM_001178056 NM_024615 AK289369 TSC_hg19_v1_chr5_+_49962800 AL834477 BC075801	221525	+	TSC_hg19_v1_chr5_+_49962920 AB463183 AM393004	221661	+	NM_198449|EMB|133418|embigin##AK300860|EMB|133418|embigin##BC059398|EMB|133418|embigin##AF488549|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##NM_021072|HCN1|348980|hyperpolarization activated cyclic nucleotide-gated potassium channel 1##AK298680|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK314466|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##BC105789|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_001178055|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_001178056|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##NM_024615|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AK289369|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AL834477|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##BC075801|PARP8|79668|poly (ADP-ribose) polymerase family, member 8##AM393004|PARP8|79668|poly (ADP-ribose) polymerase family, member 8	0.088314	0.0	
chr5	86526870	86526985	reg1011335.p1	4.214	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-613110	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-613169	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2846263	-	TSC_hg19_v1_chr5_+_86563706 CR749722	36758	+	TSC_hg19_v1_chr5_+_86563831 BC131816	36899	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	37139	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.0	0.0	
chr6	114257410	114257502	reg1010686.p2	4.214	+	TSC_hg19_v1_chr6_+_114178543 AK074526 NM_002356 BC013004 BC028284 BC068059 D10522 M68956 BC089040 EU832331 EU832416 AB463910	-78722	+	AK122906 NM_001013734	-1588925	+	TSC_hg19_v1_chr6_-_112575881 BC066552	-1681561	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	34816	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	34880	-	AF503292 NM_153612 BC093911 BC093913	126568	-	AK074526|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##NM_002356|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC013004|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC028284|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC068059|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##D10522|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##M68956|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC089040|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832331|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832416|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##AK122906|RFPL4B|442247|ret finger protein-like 4B##NM_001013734|RFPL4B|442247|ret finger protein-like 4B##BC066552|LAMA4|3910|laminin, alpha 4##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	0.0	0.465088	CTCF.p2:9:0.465
chr9	102972067	102972201	reg1007542.p1	4.214	+	TSC_hg19_v1_chr9_+_102861574 BC006370 BC111761 BC112351	-110513	+	AF039217 TSC_hg19_v1_chr9_+_102861540 BC063847 AK304851 BC072429 BC110864	-110594	+	TSC_hg19_v1_chr9_+_102861524 BC041665 NM_014425 NM_183245 AK312795	-110653	+	AK302619 NM_001161584	142718	-	BC030652 TSC_hg19_v1_chr9_-_103115211 AK304869 AK000294 AB060968 AK303662 AK298916 NM_017746	143051	-	BC042955 TSC_hg19_v1_chr9_+_103115352 AK056351	143226	+	BC006370|INVS|27130|inversin##BC111761|INVS|27130|inversin##BC112351|INVS|27130|inversin##AF039217|INVS|27130|inversin##BC063847|INVS|27130|inversin##AK304851|INVS|27130|inversin##BC072429|INVS|27130|inversin##BC041665|INVS|27130|inversin##NM_014425|INVS|27130|inversin##NM_183245|INVS|27130|inversin##AK312795|INVS|27130|inversin##AK302619|TEX10|54881|testis expressed 10##NM_001161584|TEX10|54881|testis expressed 10##BC030652|TEX10|54881|testis expressed 10##AK304869|TEX10|54881|testis expressed 10##AK000294|TEX10|54881|testis expressed 10##AB060968|TEX10|54881|testis expressed 10##AK303662|TEX10|54881|testis expressed 10##AK298916|TEX10|54881|testis expressed 10##NM_017746|TEX10|54881|testis expressed 10	0.997866	0.0	
chr9	139545102	139545234	reg1010736.p1	4.214	+	AF308602 M73980 NM_017617 TSC_hg19_v1_chr9_-_139440260	-104918	-	TSC_hg19_v1_chr9_-_139378220 AB593115	-166926	-	BC036221 NM_152571 AK055336	-167198	+	NM_016215 AL512735 AY358903 BC088371 AY358902	12233	+	TSC_hg19_v1_chr9_+_139560219 NM_201446	15047	+	BC012377 TSC_hg19_v1_chr9_+_139560248	15103	+	AF308602|NOTCH1|4851|notch 1##M73980|NOTCH1|4851|notch 1##NM_017617|NOTCH1|4851|notch 1##AB593115|SEC16A|9919|SEC16 homolog A (S. cerevisiae)##BC036221|C9orf163|158055|chromosome 9 open reading frame 163##NM_152571|C9orf163|158055|chromosome 9 open reading frame 163##AK055336|C9orf163|158055|chromosome 9 open reading frame 163##NM_016215|EGFL7|51162|EGF-like-domain, multiple 7##AL512735|EGFL7|51162|EGF-like-domain, multiple 7##AY358903|EGFL7|51162|EGF-like-domain, multiple 7##BC088371|EGFL7|51162|EGF-like-domain, multiple 7##AY358902|EGFL7|51162|EGF-like-domain, multiple 7##NM_201446|EGFL7|51162|EGF-like-domain, multiple 7##BC012377|EGFL7|51162|EGF-like-domain, multiple 7	0.0	0.0	
chr9	2017241	2017344	reg1012791.p1	4.214	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-1996	+	AF130729 NM_181872	-966683	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-966922	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	604515	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	604782	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	604820	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chr14	104338973	104339084	reg1015705.p1	4.213	+	BC136527 AJ318887 TSC_hg19_v1_chr14_-_104313913 BC035446 NM_015316	-25176	-	TSC_hg19_v1_chr14_+_104182144 NM_001198953 NM_024071 BC005999 AK057816 BC001130 AY395756 AK290519 BX248261	-156912	+	TSC_hg19_v1_chr14_-_104181759 AK022829 BC011725 BX161398 BC001036 AK023646 NM_001100118 NM_001100119 NM_005432	-157245	-	BX161388 TSC_hg19_v1_chr14_-_104387847 BC047289 BC063419 BC000429 BC001944	48817	-	AK310120 TSC_hg19_v1_chr14_-_104387867 AK309355 AK312099 AF054175 AK309499 DQ426862 NM_001127393 NM_004894	48851	-	TSC_hg19_v1_chr14_+_104394792 NM_153046	55755	+	BC136527|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##AJ318887|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##BC035446|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##NM_015316|PPP1R13B|23368|protein phosphatase 1, regulatory subunit 13B##NM_001198953|ZFYVE21|79038|zinc finger, FYVE domain containing 21##NM_024071|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC005999|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK057816|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BC001130|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AY395756|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK290519|ZFYVE21|79038|zinc finger, FYVE domain containing 21##BX248261|ZFYVE21|79038|zinc finger, FYVE domain containing 21##AK022829|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC011725|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161398|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BC001036|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##AK023646|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100118|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_001100119|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##NM_005432|XRCC3|7517|X-ray repair complementing defective repair in Chinese hamster cells 3##BX161388|C14orf2|9556|chromosome 14 open reading frame 2##BC047289|C14orf2|9556|chromosome 14 open reading frame 2##BC063419|C14orf2|9556|chromosome 14 open reading frame 2##BC000429|C14orf2|9556|chromosome 14 open reading frame 2##BC001944|C14orf2|9556|chromosome 14 open reading frame 2##AK310120|C14orf2|9556|chromosome 14 open reading frame 2##AK309355|C14orf2|9556|chromosome 14 open reading frame 2##AK312099|C14orf2|9556|chromosome 14 open reading frame 2##AF054175|C14orf2|9556|chromosome 14 open reading frame 2##AK309499|C14orf2|9556|chromosome 14 open reading frame 2##DQ426862|C14orf2|9556|chromosome 14 open reading frame 2##NM_001127393|C14orf2|9556|chromosome 14 open reading frame 2##NM_004894|C14orf2|9556|chromosome 14 open reading frame 2##NM_153046|TDRD9|122402|tudor domain containing 9	0.0	0.0	
chr15	71015121	71015211	reg1015617.p1	4.213	+	BC016881 AL834243 NM_001008224 AK055435	-20539	-	TSC_hg19_v1_chr15_-_70878946 BC040579	-136222	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	-624923	-	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	40676	-	CU675231 BC006082 BC009446 BC014018 AL833876 BC039153 TSC_hg19_v1_chr15_-_71146496 AK130092 AF443828 AF443829 AK002058 NM_018357 NM_197958	131302	-	CU693296 DQ890927 DQ894089 EU176528 AL360202 TSC_hg19_v1_chr15_-_71184737 BC027857 BC072414 AK313472 NM_020147	169525	-	BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC006082|LARP6|55323|La ribonucleoprotein domain family, member 6##BC009446|LARP6|55323|La ribonucleoprotein domain family, member 6##BC014018|LARP6|55323|La ribonucleoprotein domain family, member 6##AL833876|LARP6|55323|La ribonucleoprotein domain family, member 6##BC039153|LARP6|55323|La ribonucleoprotein domain family, member 6##AK130092|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443828|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443829|LARP6|55323|La ribonucleoprotein domain family, member 6##AK002058|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_018357|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_197958|LARP6|55323|La ribonucleoprotein domain family, member 6##DQ890927|THAP10|56906|THAP domain containing 10##DQ894089|THAP10|56906|THAP domain containing 10##EU176528|THAP10|56906|THAP domain containing 10##AL360202|THAP10|56906|THAP domain containing 10##BC027857|THAP10|56906|THAP domain containing 10##BC072414|THAP10|56906|THAP domain containing 10##AK313472|THAP10|56906|THAP domain containing 10##NM_020147|THAP10|56906|THAP domain containing 10	0.0	0.994515	CTCF.p2:-5:0.995
chr20	48687675	48687846	reg1007106.p1	4.213	+	TSC_hg19_v1_chr20_+_48599515 NM_005985 AK313228 BC012910 AF125377 DQ891599 DQ894793 AB464226 AF131208 CU680444	-88207	+	BX640603 TSC_hg19_v1_chr20_+_48552935 BC066919 AF265215 AK301731 BC013695 AB587558 BT006795	-134817	+	TSC_hg19_v1_chr20_+_48552933 AK315638	-134829	+	BT007382 CU674232 HQ448675 TSC_hg19_v1_chr20_-_48729684 BC000468 BX647511 BX648147 NM_001032288	41930	-	TSC_hg19_v1_chr20_-_48732483 AK314754 NM_022442 BC005215 NM_021988 NM_199144	44728	-	TSC_hg19_v1_chr20_-_48770209 BC140089 BC143091 AB587452	82430	-	NM_005985|SNAI1|6615|snail homolog 1 (Drosophila)##AK313228|SNAI1|6615|snail homolog 1 (Drosophila)##BC012910|SNAI1|6615|snail homolog 1 (Drosophila)##AF125377|SNAI1|6615|snail homolog 1 (Drosophila)##DQ891599|SNAI1|6615|snail homolog 1 (Drosophila)##DQ894793|SNAI1|6615|snail homolog 1 (Drosophila)##AF131208|SNAI1|6615|snail homolog 1 (Drosophila)##BX640603|RNF114|55905|ring finger protein 114##BC066919|RNF114|55905|ring finger protein 114##AF265215|RNF114|55905|ring finger protein 114##AK301731|RNF114|55905|ring finger protein 114##BC013695|RNF114|55905|ring finger protein 114##BT006795|RNF114|55905|ring finger protein 114##AK315638|RNF114|55905|ring finger protein 114##BT007382|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##HQ448675|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC000468|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX647511|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BX648147|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_001032288|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##AK314754|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_022442|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC005215|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_021988|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##NM_199144|UBE2V1|7335|ubiquitin-conjugating enzyme E2 variant 1##BC140089|TMEM189|387521|transmembrane protein 189##BC143091|TMEM189|387521|transmembrane protein 189	1.405166	0.0	denovo_WM_7:-2:0.308	denovo_WM_7:-23:0.230	denovo_WM_7:-24:0.230	denovo_WM_7:-25:0.243	denovo_WM_7:-26:0.243
chr4	151788409	151788509	reg1010654.p1	4.213	+	TSC_hg19_v1_chr4_-_151773972 BC172218	-14465	-	TSC_hg19_v1_chr4_-_151770612 AB208838	-17810	-	NM_006439	-285383	+	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	147959	-	AF216648 NM_006726	148189	-	TSC_hg19_v1_chr4_-_151936880 AK098039	148431	-	AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	0.0	0.767164	CTCF.p2:-38:0.767
chr4	699625	699720	reg1014141.p2	4.213	+	TSC_hg19_v1_chr4_+_699570 AK225892 NM_006315 AK057124 AK300290 AK125801	-42	+	TSC_hg19_v1_chr4_-_683107 AK292010	-16556	-	TSC_hg19_v1_chr4_-_682967 BC030246 NM_032219 AK025922	-16647	-	TSC_hg19_v1_chr4_-_775606 BC040652 AK055583	75950	-	AK126578 TSC_hg19_v1_chr4_-_819894 AK311921 AB593095 BC002471 NM_006651	120253	-	TSC_hg19_v1_chr4_-_925898 BT007015 D88435	226249	-	AK225892|PCGF3|10336|polycomb group ring finger 3##NM_006315|PCGF3|10336|polycomb group ring finger 3##AK057124|PCGF3|10336|polycomb group ring finger 3##AK300290|PCGF3|10336|polycomb group ring finger 3##AK125801|PCGF3|10336|polycomb group ring finger 3##AK292010|MFSD7|84179|major facilitator superfamily domain containing 7##BC030246|MFSD7|84179|major facilitator superfamily domain containing 7##NM_032219|MFSD7|84179|major facilitator superfamily domain containing 7##AK025922|MFSD7|84179|major facilitator superfamily domain containing 7##BC040652|LOC100129917|100129917|uncharacterized LOC100129917##AK055583|LOC100129917|100129917|uncharacterized LOC100129917##AK126578|CPLX1|10815|complexin 1##AK311921|CPLX1|10815|complexin 1##AB593095|CPLX1|10815|complexin 1##BC002471|CPLX1|10815|complexin 1##NM_006651|CPLX1|10815|complexin 1##BT007015|GAK|2580|cyclin G associated kinase##D88435|GAK|2580|cyclin G associated kinase	0.0	0.0	
chr7	28893911	28894040	reg1013073.p1	4.213	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	-168292	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-363210	+	L05911 NM_004904	-418742	+	CU690330 TSC_hg19_v1_chr7_-_28997732	103722	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	103954	-	AK293803 NM_014817 TSC_hg19_v1_chr7_-_28998036	104057	-	L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats##NM_014817|TRIL|9865|TLR4 interactor with leucine-rich repeats	0.0	0.049927	
chr7	74073551	74073708	reg1002305.p1	4.213	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-1507	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-1585	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-1608	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	114723	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	194210	-	TSC_hg19_v1_chr7_-_74306679 BC002581	233046	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	1.949533	0.0	denovo_WM_7:-65:0.841	denovo_WM_7:103:0.734
chr1	213050347	213050446	reg1009382.p1	4.212	+	AF118637 NM_014053 AK314481 BC048312 TSC_hg19_v1_chr1_+_213031754	-18716	+	TSC_hg19_v1_chr1_-_213031441 AY030238 AY030239 AK092887	-18932	-	AY640234 BC035742 NM_001024601	-29428	-	TSC_hg19_v1_chr1_+_213123945 AK290973 NM_001136474 NM_001136475 NM_024749 AK022567 AK096605 BC053836 BC051856 BC028194	73521	+	AK302675 TSC_hg19_v1_chr1_+_213124038	73627	+	TSC_hg19_v1_chr1_-_213188830 AK299208	138415	-	AF118637|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##NM_014053|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##AK314481|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##BC048312|FLVCR1|28982|feline leukemia virus subgroup C cellular receptor 1##AY030238|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY030239|FLVCR1-AS1|642946|FLVCR1 antisense RNA 1 (non-protein coding)##AY640234|C1orf227|149643|chromosome 1 open reading frame 227##BC035742|C1orf227|149643|chromosome 1 open reading frame 227##NM_001024601|C1orf227|149643|chromosome 1 open reading frame 227##AK290973|VASH2|79805|vasohibin 2##NM_001136474|VASH2|79805|vasohibin 2##NM_001136475|VASH2|79805|vasohibin 2##NM_024749|VASH2|79805|vasohibin 2##AK022567|VASH2|79805|vasohibin 2##AK096605|VASH2|79805|vasohibin 2##BC053836|VASH2|79805|vasohibin 2##BC051856|VASH2|79805|vasohibin 2##BC028194|VASH2|79805|vasohibin 2##AK302675|VASH2|79805|vasohibin 2##AK299208|ANGEL2|90806|angel homolog 2 (Drosophila)	0.995278	0.0	
chr1	231547843	231547911	reg1009047.p2	4.212	+	TSC_hg19_v1_chr1_+_231473794 BC015740	-74090	+	NM_001010984 NM_032018 BC068478 TSC_hg19_v1_chr1_+_231473753	-74159	+	CU690194 AB587600 BC035763 TSC_hg19_v1_chr1_-_231473577 NM_175876 AK096460	-74323	-	AF229245 NM_022051	12912	-	FJ804217 FJ804218 FJ804219 FJ804220 FJ804221 FJ804222 FJ804223 FJ804224 NM_005999 X95073 TSC_hg19_v1_chr1_+_231664423 BC011797 BC000236 BC010376 AK313068	116554	+	TSC_hg19_v1_chr1_+_231762561 AF222980 AJ506177 AJ506178 FJ804174 FJ804175 FJ804176 FJ804177 FJ804178 FJ804179 FJ804180 FJ804181 FJ804182 FJ804183 FJ804184 FJ804185 FJ804186 FJ804187 FJ804188 FJ804189 FJ804190 FJ804191 FJ804192 FJ804193 FJ804194 FJ804195 FJ804196 FJ804197 FJ804198 FJ804199 FJ804200 FJ804201 FJ804202 FJ804203 FJ804204 FJ804205 FJ804206 FJ804207 FJ804208 FJ804209 FJ804210 FJ804211 FJ804212 FJ804213 FJ804214 FJ804215 FJ804216 NM_001012957 NM_001012958 NM_001012959 NM_001164537 NM_001164538 NM_001164539 NM_001164540 NM_001164541 NM_001164542 NM_001164544 NM_001164545 NM_001164546 NM_001164547 NM_001164548 NM_001164549 NM_001164550 NM_001164551 NM_001164552 NM_001164553 NM_001164554 NM_001164555 NM_001164556 NM_018662 AB007926 BC151225 BC142622 BC038954	214678	+	BC015740|C1orf124|83932|chromosome 1 open reading frame 124##NM_001010984|C1orf124|83932|chromosome 1 open reading frame 124##NM_032018|C1orf124|83932|chromosome 1 open reading frame 124##BC068478|C1orf124|83932|chromosome 1 open reading frame 124##BC035763|EXOC8|149371|exocyst complex component 8##NM_175876|EXOC8|149371|exocyst complex component 8##AK096460|EXOC8|149371|exocyst complex component 8##AF229245|EGLN1|54583|egl nine homolog 1 (C. elegans)##NM_022051|EGLN1|54583|egl nine homolog 1 (C. elegans)##FJ804217|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804218|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804219|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804220|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804221|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804222|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804223|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804224|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##NM_005999|TSNAX|7257|translin-associated factor X##X95073|TSNAX|7257|translin-associated factor X##BC011797|TSNAX|7257|translin-associated factor X##BC010376|TSNAX|7257|translin-associated factor X##AK313068|TSNAX|7257|translin-associated factor X##AF222980|DISC1|27185|disrupted in schizophrenia 1##AJ506177|DISC1|27185|disrupted in schizophrenia 1##AJ506178|DISC1|27185|disrupted in schizophrenia 1##FJ804174|DISC1|27185|disrupted in schizophrenia 1##FJ804175|DISC1|27185|disrupted in schizophrenia 1##FJ804176|DISC1|27185|disrupted in schizophrenia 1##FJ804177|DISC1|27185|disrupted in schizophrenia 1##FJ804178|DISC1|27185|disrupted in schizophrenia 1##FJ804179|DISC1|27185|disrupted in schizophrenia 1##FJ804180|DISC1|27185|disrupted in schizophrenia 1##FJ804181|DISC1|27185|disrupted in schizophrenia 1##FJ804182|DISC1|27185|disrupted in schizophrenia 1##FJ804183|DISC1|27185|disrupted in schizophrenia 1##FJ804184|DISC1|27185|disrupted in schizophrenia 1##FJ804185|DISC1|27185|disrupted in schizophrenia 1##FJ804186|DISC1|27185|disrupted in schizophrenia 1##FJ804187|DISC1|27185|disrupted in schizophrenia 1##FJ804188|DISC1|27185|disrupted in schizophrenia 1##FJ804189|DISC1|27185|disrupted in schizophrenia 1##FJ804190|DISC1|27185|disrupted in schizophrenia 1##FJ804191|DISC1|27185|disrupted in schizophrenia 1##FJ804192|DISC1|27185|disrupted in schizophrenia 1##FJ804193|DISC1|27185|disrupted in schizophrenia 1##FJ804194|DISC1|27185|disrupted in schizophrenia 1##FJ804195|DISC1|27185|disrupted in schizophrenia 1##FJ804196|DISC1|27185|disrupted in schizophrenia 1##FJ804197|DISC1|27185|disrupted in schizophrenia 1##FJ804198|DISC1|27185|disrupted in schizophrenia 1##FJ804199|DISC1|27185|disrupted in schizophrenia 1##FJ804200|DISC1|27185|disrupted in schizophrenia 1##FJ804201|DISC1|27185|disrupted in schizophrenia 1##FJ804202|DISC1|27185|disrupted in schizophrenia 1##FJ804203|DISC1|27185|disrupted in schizophrenia 1##FJ804204|DISC1|27185|disrupted in schizophrenia 1##FJ804205|DISC1|27185|disrupted in schizophrenia 1##FJ804206|DISC1|27185|disrupted in schizophrenia 1##FJ804207|DISC1|27185|disrupted in schizophrenia 1##FJ804208|DISC1|27185|disrupted in schizophrenia 1##FJ804209|DISC1|27185|disrupted in schizophrenia 1##FJ804210|DISC1|27185|disrupted in schizophrenia 1##FJ804211|DISC1|27185|disrupted in schizophrenia 1##FJ804212|DISC1|27185|disrupted in schizophrenia 1##FJ804213|DISC1|27185|disrupted in schizophrenia 1##FJ804214|DISC1|27185|disrupted in schizophrenia 1##FJ804215|DISC1|27185|disrupted in schizophrenia 1##FJ804216|DISC1|27185|disrupted in schizophrenia 1##NM_001012957|DISC1|27185|disrupted in schizophrenia 1##NM_001012958|DISC1|27185|disrupted in schizophrenia 1##NM_001012959|DISC1|27185|disrupted in schizophrenia 1##NM_001164537|DISC1|27185|disrupted in schizophrenia 1##NM_001164538|DISC1|27185|disrupted in schizophrenia 1##NM_001164539|DISC1|27185|disrupted in schizophrenia 1##NM_001164540|DISC1|27185|disrupted in schizophrenia 1##NM_001164541|DISC1|27185|disrupted in schizophrenia 1##NM_001164542|DISC1|27185|disrupted in schizophrenia 1##NM_001164544|DISC1|27185|disrupted in schizophrenia 1##NM_001164545|DISC1|27185|disrupted in schizophrenia 1##NM_001164546|DISC1|27185|disrupted in schizophrenia 1##NM_001164547|DISC1|27185|disrupted in schizophrenia 1##NM_001164548|DISC1|27185|disrupted in schizophrenia 1##NM_001164549|DISC1|27185|disrupted in schizophrenia 1##NM_001164550|DISC1|27185|disrupted in schizophrenia 1##NM_001164551|DISC1|27185|disrupted in schizophrenia 1##NM_001164552|DISC1|27185|disrupted in schizophrenia 1##NM_001164553|DISC1|27185|disrupted in schizophrenia 1##NM_001164554|DISC1|27185|disrupted in schizophrenia 1##NM_001164555|DISC1|27185|disrupted in schizophrenia 1##NM_001164556|DISC1|27185|disrupted in schizophrenia 1##NM_018662|DISC1|27185|disrupted in schizophrenia 1##AB007926|DISC1|27185|disrupted in schizophrenia 1##BC151225|DISC1|27185|disrupted in schizophrenia 1##BC142622|DISC1|27185|disrupted in schizophrenia 1##BC038954|DISC1|27185|disrupted in schizophrenia 1	1.338274	0.0	
chr22	29563610	29563748	reg1012235.p2	4.212	+	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	-94657	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	-105830	-	TSC_hg19_v1_chr22_+_29449893 BC042614	-113754	+	TSC_hg19_v1_chr22_+_29601914 BC046358 NM_133455 CR456407 CU012965 CU013253 AB463024 AJ416090	38213	+	TSC_hg19_v1_chr22_-_29663824 AL050346 NM_012265	100189	-	NM_001163285 NM_001163286 NM_001163287 NM_005243 NM_013986 TSC_hg19_v1_chr22_+_29664088	100368	+	BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##BC042614|ZNRF3|84133|zinc and ring finger 3##BC046358|EMID1|129080|EMI domain containing 1##NM_133455|EMID1|129080|EMI domain containing 1##CR456407|EMID1|129080|EMI domain containing 1##CU012965|EMID1|129080|EMI domain containing 1##CU013253|EMID1|129080|EMI domain containing 1##AJ416090|EMID1|129080|EMI domain containing 1##AL050346|RHBDD3|25807|rhomboid domain containing 3##NM_012265|RHBDD3|25807|rhomboid domain containing 3##NM_001163285|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163286|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163287|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_005243|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_013986|EWSR1|2130|Ewing sarcoma breakpoint region 1	0.0	0.0	
chr6	21100339	21100462	reg1012731.p1	4.212	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-565677	+	CR749285 NM_001243076	-696367	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-698297	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	493972	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	566259	+	BC015850 NM_000948	1197329	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.156481	0.0	
chr7	74074095	74074197	reg1002305.p2	4.212	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-2024	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-2102	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-2125	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	114206	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	193693	-	TSC_hg19_v1_chr7_-_74306679 BC002581	232529	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.0	0.0	
chr8	70638662	70638762	reg1014453.p1	4.212	+	AY101175 TSC_hg19_v1_chr8_+_70405081 AK055607 BX571746	-233623	+	NM_001128205 NM_001128206 TSC_hg19_v1_chr8_+_70405045	-233673	+	TSC_hg19_v1_chr8_+_70379077 AK307951	-259632	+	BC137424 BC144618 NM_001146009	106691	-	AK022760 NM_001146008	106912	-	AK308488 AF205075 AK096879 NM_030958	108537	-	AY101175|SULF1|23213|sulfatase 1##AK055607|SULF1|23213|sulfatase 1##BX571746|SULF1|23213|sulfatase 1##NM_001128205|SULF1|23213|sulfatase 1##NM_001128206|SULF1|23213|sulfatase 1##AK307951|SULF1|23213|sulfatase 1##BC137424|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC144618|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146009|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK022760|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_001146008|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1	0.997797	0.0	denovo_WM_7:27:0.238	denovo_WM_7:28:0.238	denovo_WM_7:29:0.238	denovo_WM_7:30:0.238
chr10	64537034	64537100	reg1014043.p1	4.211	+	AJ505150 NM_199452	-256861	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-403024	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-508528	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	27475	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	27590	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	39030	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.0	0.0	
chr11	60542934	60543114	reg1015417.p1	4.211	+	NM_001098835 NM_152717 AK300233 BC031610 AK091846 AX747218 AY584608 AY584609	-18615	+	AF237905 NM_031457 AK310969 AK310884 AK315901 BC022895 AK308413 AF350504 AK310872	-75892	+	AY324188 AY324189 AY324190 NM_001012417 NM_001100909 BC140799 BC171746	-260076	+	AK122633 NM_206893 BC137259 BC137263	9821	+	NM_024098 TSC_hg19_v1_chr11_+_60609543 AK025974 AK302329 AK123775 BC001378 DQ892603 DQ895844 DQ501251	66497	+	AF144308 AK291371 AK313849 TSC_hg19_v1_chr11_-_60623424 AB008535 NM_004778	80408	-	NM_001098835|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##NM_152717|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK300233|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##BC031610|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK091846|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AY584608|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AY584609|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AF237905|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##NM_031457|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310969|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310884|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK315901|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##BC022895|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK308413|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AF350504|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310872|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AY324188|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324189|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324190|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001012417|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001100909|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC140799|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC171746|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AK122633|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##NM_206893|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##BC137259|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##BC137263|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##NM_024098|CCDC86|79080|coiled-coil domain containing 86##AK025974|CCDC86|79080|coiled-coil domain containing 86##AK302329|CCDC86|79080|coiled-coil domain containing 86##AK123775|CCDC86|79080|coiled-coil domain containing 86##BC001378|CCDC86|79080|coiled-coil domain containing 86##DQ892603|CCDC86|79080|coiled-coil domain containing 86##DQ895844|CCDC86|79080|coiled-coil domain containing 86##DQ501251|CCDC86|79080|coiled-coil domain containing 86##AF144308|PTGDR2|11251|prostaglandin D2 receptor 2##AK291371|PTGDR2|11251|prostaglandin D2 receptor 2##AK313849|PTGDR2|11251|prostaglandin D2 receptor 2##AB008535|PTGDR2|11251|prostaglandin D2 receptor 2##NM_004778|PTGDR2|11251|prostaglandin D2 receptor 2	0.0	0.990608	CTCF.p2:-16:0.991
chr20	52556587	52556709	reg1011846.p1	4.211	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-345849	-	AF041259 NM_006526	-357013	-	AK302570 NM_001193421	-754827	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	130414	-	AK315220 NM_003657	130655	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	233872	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.069645	0.027624	
chr20	62488825	62488975	reg1013817.p1	4.211	+	TSC_hg19_v1_chr20_-_62462618 BC052269 BC073800	-26303	-	AK131482 NM_025224	-52045	-	TSC_hg19_v1_chr20_+_62372460 AK298304 BC017446	-116380	+	NM_080622	3665	+	NM_001243891 NM_001243892 NM_001243894 NM_001243895 NM_003288 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363 TSC_hg19_v1_chr20_+_62496622 AK298366 AK055068 AK297064 AK314501	7703	+	TSC_hg19_v1_chr20_+_62496638 AF004430	7740	+	BC052269|ZBTB46|140685|zinc finger and BTB domain containing 46##BC073800|ZBTB46|140685|zinc finger and BTB domain containing 46##AK131482|ZBTB46|140685|zinc finger and BTB domain containing 46##NM_025224|ZBTB46|140685|zinc finger and BTB domain containing 46##AK298304|SLC2A4RG|56731|SLC2A4 regulator##BC017446|SLC2A4RG|56731|SLC2A4 regulator##NM_080622|ABHD16B|140701|abhydrolase domain containing 16B##NM_001243891|TPD52L2|7165|tumor protein D52-like 2##NM_001243892|TPD52L2|7165|tumor protein D52-like 2##NM_001243894|TPD52L2|7165|tumor protein D52-like 2##NM_001243895|TPD52L2|7165|tumor protein D52-like 2##NM_003288|TPD52L2|7165|tumor protein D52-like 2##NM_199359|TPD52L2|7165|tumor protein D52-like 2##NM_199360|TPD52L2|7165|tumor protein D52-like 2##NM_199361|TPD52L2|7165|tumor protein D52-like 2##NM_199362|TPD52L2|7165|tumor protein D52-like 2##NM_199363|TPD52L2|7165|tumor protein D52-like 2##AK298366|TPD52L2|7165|tumor protein D52-like 2##AK055068|TPD52L2|7165|tumor protein D52-like 2##AK297064|TPD52L2|7165|tumor protein D52-like 2##AK314501|TPD52L2|7165|tumor protein D52-like 2##AF004430|TPD52L2|7165|tumor protein D52-like 2	0.99768	0.0	denovo_WM_7:-2:0.470	denovo_WM_7:-3:0.527
chr3	164291871	164292030	reg1015483.p1	4.211	+	NM_001080440	-3077355	+	AF458592 BC037817 NM_001040100	-3202142	-	AK308865 BC013317 NM_015938 TSC_hg19_v1_chr3_+_160939098 AF132941 AK296710	-3352829	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	504328	-	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	622555	-	M16474 BC018141 BC008396 TSC_hg19_v1_chr3_-_165555212 AK292063 M16541	1263243	-	NM_001080440|OTOL1|131149|otolin 1##AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##AK308865|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC013317|NMD3|51068|NMD3 homolog (S. cerevisiae)##NM_015938|NMD3|51068|NMD3 homolog (S. cerevisiae)##AF132941|NMD3|51068|NMD3 homolog (S. cerevisiae)##AK296710|NMD3|51068|NMD3 homolog (S. cerevisiae)##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3##M16474|BCHE|590|butyrylcholinesterase##BC018141|BCHE|590|butyrylcholinesterase##BC008396|BCHE|590|butyrylcholinesterase##AK292063|BCHE|590|butyrylcholinesterase##M16541|BCHE|590|butyrylcholinesterase	0.996942	0.0	denovo_WM_7:-18:0.841
chr10	109947522	109947667	reg1014289.p1	4.210	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-1023218	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1488535	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3546549	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1735615	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1735683	-	NM_019903 AB209810 BC057285	1818187	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	0.0	0.0	
chr16	48151490	48151610	reg1012142.p1	4.210	+	TSC_hg19_v1_chr16_+_47495241 X84908 CR936710 BC033657 AK309226	-656311	+	TSC_hg19_v1_chr16_+_47495206 NM_000293 NM_001031835 AK298588	-656362	+	TSC_hg19_v1_chr16_-_47495158 AF212247 AK301908	-656393	-	AY196326 AY040220 NM_033226	29070	-	AY040219 NM_033151	114631	-	AF367202 AF411579 NM_032583 NM_145186	117537	-	X84908|PHKB|5257|phosphorylase kinase, beta##CR936710|PHKB|5257|phosphorylase kinase, beta##BC033657|PHKB|5257|phosphorylase kinase, beta##AK309226|PHKB|5257|phosphorylase kinase, beta##NM_000293|PHKB|5257|phosphorylase kinase, beta##NM_001031835|PHKB|5257|phosphorylase kinase, beta##AF212247|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK301908|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AY196326|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040220|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##NM_033226|ABCC12|94160|ATP-binding cassette, sub-family C (CFTR/MRP), member 12##AY040219|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_033151|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11	0.0	0.995396	CTCF.p2:6:0.995
chr18	13606961	13607129	reg1010683.p1	4.210	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-388260	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-615700	+	TSC_hg19_v1_chr18_+_12948029 AF136976 AK056940 AK291226 BC012430 AF255625 AF431970 AF514996 CU680322	-658981	+	NM_001003674 NM_001003675	4619	+	AF009426 AF009427 NM_004338 NM_181483	13821	+	TSC_hg19_v1_chr18_-_13726549 AK055618	119461	-	NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF136976|SEH1L|81929|SEH1-like (S. cerevisiae)##AK056940|SEH1L|81929|SEH1-like (S. cerevisiae)##AK291226|SEH1L|81929|SEH1-like (S. cerevisiae)##BC012430|SEH1L|81929|SEH1-like (S. cerevisiae)##AF255625|SEH1L|81929|SEH1-like (S. cerevisiae)##AF431970|SEH1L|81929|SEH1-like (S. cerevisiae)##AF514996|SEH1L|81929|SEH1-like (S. cerevisiae)##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr20	5590537	5590657	reg1008856.p2	4.210	+	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-295561	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-482902	+	TSC_hg19_v1_chr20_+_5107615 NM_003818 AK315489 Y16521 AK304763	-483075	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	990	-	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	140469	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	301529	+	AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##NM_003818|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK315489|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##Y16521|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK304763|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)	0.997553	0.0	denovo_WM_7:-94:0.771
chr10	32151354	32151468	reg1014028.p1	4.209	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-541322	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-543278	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-543454	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	66313	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	66374	-	TSC_hg19_v1_chr10_-_32344938 AB462413	193521	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.828485	0.011969	denovo_WM_7:-98:0.511
chr14	35761006	35761162	reg1011130.p1	4.209	+	TSC_hg19_v1_chr14_+_35591757 AK301931 BC050339 BC044580 BC001542 AK304066 BC032221 NM_014672 AB002389 BX161394 BX161487 AK303508	-169232	+	AK293717 BX248043 TSC_hg19_v1_chr14_-_35591728	-169394	-	AK000651 AK225512 AK225447 TSC_hg19_v1_chr14_-_35591505 BC063438 BC100021 AY157304 AY157305 NM_017917	-169606	-	TSC_hg19_v1_chr14_+_35761597 AK298920 NM_002791 AK313011 BC070137	487	+	BC023659 TSC_hg19_v1_chr14_+_35761609 BC017882 X59417 BC002979 D28434 BC022354 AK316223 DQ892346 DQ895551 AB528503 CR456944	559	+	TSC_hg19_v1_chr14_-_35873956 BT007091 CU678060 AB528629 AY033600 BC004983 M69043 BC002601 AK311515 AK313421 NM_020529	112840	-	AK301931|KIAA0391|9692|KIAA0391##BC044580|KIAA0391|9692|KIAA0391##BC001542|KIAA0391|9692|KIAA0391##AK304066|KIAA0391|9692|KIAA0391##BC032221|KIAA0391|9692|KIAA0391##NM_014672|KIAA0391|9692|KIAA0391##AB002389|KIAA0391|9692|KIAA0391##BX161394|KIAA0391|9692|KIAA0391##BX161487|KIAA0391|9692|KIAA0391##AK303508|KIAA0391|9692|KIAA0391##AK293717|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BX248043|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK000651|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK225512|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK225447|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC063438|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC100021|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY157304|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY157305|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##NM_017917|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK298920|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##NM_002791|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK313011|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC070137|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC023659|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC017882|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##X59417|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC002979|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##D28434|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BC022354|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##AK316223|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ892346|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##DQ895551|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##CR456944|PSMA6|5687|proteasome (prosome, macropain) subunit, alpha type, 6##BT007091|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AY033600|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC004983|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##M69043|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##BC002601|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK311515|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##AK313421|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha##NM_020529|NFKBIA|4792|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	0.996168	0.0	
chr17	3650514	3650633	reg1016238.p1	4.209	+	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	-23357	+	TSC_hg19_v1_chr17_-_3627077 AF289864	-23471	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-50981	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	53880	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	53938	-	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	98937	-	BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85	0.993364	0.0	denovo_WM_7:47:0.411	denovo_WM_7:48:0.554
chr1	9121670	9121760	reg1010931.p1	4.209	+	TSC_hg19_v1_chr1_-_9117554 AF451839 AF479408	-4137	-	AB527336 AY571960 NM_207420	-35312	-	NM_001215 AK300652 BC034350 M57892 AB102863 AB103091	-115782	+	TSC_hg19_v1_chr1_-_9129605 DQ892291 DQ895491 CU674838 AK300091	7884	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	7926	-	TSC_hg19_v1_chr1_-_9129695 M55531 AK290398 AK294368 NM_001135585 NM_003039	8061	-	AF451839|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AF479408|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AY571960|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_207420|SLC2A7|155184|solute carrier family 2 (facilitated glucose transporter), member 7##NM_001215|CA6|765|carbonic anhydrase VI##AK300652|CA6|765|carbonic anhydrase VI##BC034350|CA6|765|carbonic anhydrase VI##M57892|CA6|765|carbonic anhydrase VI##AB102863|CA6|765|carbonic anhydrase VI##AB103091|CA6|765|carbonic anhydrase VI##DQ892291|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##DQ895491|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK300091|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##M55531|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK290398|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK294368|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_001135585|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_003039|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5	0.99753	0.0	denovo_WM_7:-42:0.884
chr6	153353604	153353783	reg1012391.p2	4.209	+	TSC_hg19_v1_chr6_-_153323873 AK297671 NM_001114184 NM_019041	-29796	-	TSC_hg19_v1_chr6_-_153323849 AK095240	-29835	-	TSC_hg19_v1_chr6_-_153323845 BC105973 BC011873	-29850	-	BC013117 NM_012419 AF202257 TSC_hg19_v1_chr6_-_153452453	98727	-	AB055767 TSC_hg19_v1_chr6_-_153603892	250198	-	DQ680044 NM_001145279 NM_001145280 EU340241 EU340242 EU340243 NM_001145281	977939	+	AK297671|MTRF1L|54516|mitochondrial translational release factor 1-like##NM_001114184|MTRF1L|54516|mitochondrial translational release factor 1-like##NM_019041|MTRF1L|54516|mitochondrial translational release factor 1-like##AK095240|MTRF1L|54516|mitochondrial translational release factor 1-like##BC105973|MTRF1L|54516|mitochondrial translational release factor 1-like##BC011873|MTRF1L|54516|mitochondrial translational release factor 1-like##BC013117|RGS17|26575|regulator of G-protein signaling 17##NM_012419|RGS17|26575|regulator of G-protein signaling 17##AF202257|RGS17|26575|regulator of G-protein signaling 17##DQ680044|OPRM1|4988|opioid receptor, mu 1##NM_001145279|OPRM1|4988|opioid receptor, mu 1##NM_001145280|OPRM1|4988|opioid receptor, mu 1##EU340241|OPRM1|4988|opioid receptor, mu 1##EU340242|OPRM1|4988|opioid receptor, mu 1##EU340243|OPRM1|4988|opioid receptor, mu 1##NM_001145281|OPRM1|4988|opioid receptor, mu 1	0.996877	0.820847	denovo_WM_7:24:0.793	CTCF.p2:-78:0.821
chr7	30101599	30101725	reg1014701.p1	4.209	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-33371	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-33661	+	CU675039 DQ892525 DQ895737 TSC_hg19_v1_chr7_-_30066286 AK000738 NM_017946 AK309552 AY358643 BC005206	-35441	-	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	72920	+	AF513707 NM_147128	222260	+	TSC_hg19_v1_chr7_+_30324515 AF527533	222887	+	BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ892525|FKBP14|55033|FK506 binding protein 14, 22 kDa##DQ895737|FKBP14|55033|FK506 binding protein 14, 22 kDa##AK000738|FKBP14|55033|FK506 binding protein 14, 22 kDa##NM_017946|FKBP14|55033|FK506 binding protein 14, 22 kDa##AK309552|FKBP14|55033|FK506 binding protein 14, 22 kDa##AY358643|FKBP14|55033|FK506 binding protein 14, 22 kDa##BC005206|FKBP14|55033|FK506 binding protein 14, 22 kDa##NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2	0.0	0.200058	CTCF.p2:-31:0.200
chr7	74206115	74206248	reg1011328.p1	4.209	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	-17829	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-134059	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-134137	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	61658	-	TSC_hg19_v1_chr7_-_74306679 BC002581	100494	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	100502	-	BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2##AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2	0.0	0.0	
chr8	57014080	57014260	reg1006448.p2	4.209	+	BC087850 BC007507 L06498 AK130961 AK311808 TSC_hg19_v1_chr8_-_56987066 AK301342 D28358 NM_001023 NM_001146227	-27084	-	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	-221650	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	-221775	+	AB464742 BC069569 BC069590 BC106737 BC106738 NM_005372	12370	-	TSC_hg19_v1_chr8_-_57123833 U65002	109665	-	AK296933 AK313663 NM_001114634 NM_001114635 NM_002655 TSC_hg19_v1_chr8_-_57123860	109691	-	BC087850|RPS20|6224|ribosomal protein S20##BC007507|RPS20|6224|ribosomal protein S20##L06498|RPS20|6224|ribosomal protein S20##AK130961|RPS20|6224|ribosomal protein S20##AK311808|RPS20|6224|ribosomal protein S20##AK301342|RPS20|6224|ribosomal protein S20##D28358|RPS20|6224|ribosomal protein S20##NM_001023|RPS20|6224|ribosomal protein S20##NM_001146227|RPS20|6224|ribosomal protein S20##AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC069569|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC069590|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106737|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##BC106738|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##NM_005372|MOS|4342|v-mos Moloney murine sarcoma viral oncogene homolog##U65002|PLAG1|5324|pleiomorphic adenoma gene 1##AK296933|PLAG1|5324|pleiomorphic adenoma gene 1##AK313663|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114634|PLAG1|5324|pleiomorphic adenoma gene 1##NM_001114635|PLAG1|5324|pleiomorphic adenoma gene 1##NM_002655|PLAG1|5324|pleiomorphic adenoma gene 1	0.0	0.0	
chr10	105250281	105250446	reg1009670.p1	4.208	+	BC043367 NM_001129742	-11367	-	BC036193 BC036208 NM_001001412	-31718	-	TSC_hg19_v1_chr10_-_105212166 AK022195 NM_015916	-38200	-	NM_004210 U87864	3371	+	AK299620 TSC_hg19_v1_chr10_+_105344798	94404	+	AB385330 TSC_hg19_v1_chr10_-_105420936	170545	-	BC043367|CALHM3|119395|calcium homeostasis modulator 3##NM_001129742|CALHM3|119395|calcium homeostasis modulator 3##BC036193|CALHM1|255022|calcium homeostasis modulator 1##BC036208|CALHM1|255022|calcium homeostasis modulator 1##NM_001001412|CALHM1|255022|calcium homeostasis modulator 1##AK022195|CALHM2|51063|calcium homeostasis modulator 2##NM_015916|CALHM2|51063|calcium homeostasis modulator 2##NM_004210|NEURL|9148|neuralized homolog (Drosophila)##U87864|NEURL|9148|neuralized homolog (Drosophila)##AK299620|NEURL|9148|neuralized homolog (Drosophila)	0.992216	0.0	denovo_WM_7:-8:0.476	denovo_WM_7:-9:0.425
chr16	50216691	50216871	reg1016841.p1	4.208	+	TSC_hg19_v1_chr16_+_50186838 AK300918 NM_001040284 NM_001040285	-29946	+	TSC_hg19_v1_chr16_+_50099915 AK289949 BC018730 BC033077	-116821	+	NM_182922 TSC_hg19_v1_chr16_+_50099906 AF462442 AK000725 BC014415	-116888	+	AK093706 TSC_hg19_v1_chr16_+_50300480 BC028085	83695	+	TSC_hg19_v1_chr16_+_50308041 BC039891	91272	+	NM_001114 D25538	105042	+	AK300918|PAPD5|64282|PAP associated domain containing 5##NM_001040284|PAPD5|64282|PAP associated domain containing 5##NM_001040285|PAPD5|64282|PAP associated domain containing 5##AK289949|HEATR3|55027|HEAT repeat containing 3##BC018730|HEATR3|55027|HEAT repeat containing 3##BC033077|HEATR3|55027|HEAT repeat containing 3##NM_182922|HEATR3|55027|HEAT repeat containing 3##AF462442|HEATR3|55027|HEAT repeat containing 3##AK000725|HEATR3|55027|HEAT repeat containing 3##BC014415|HEATR3|55027|HEAT repeat containing 3##AK093706|ADCY7|113|adenylate cyclase 7##BC039891|ADCY7|113|adenylate cyclase 7##NM_001114|ADCY7|113|adenylate cyclase 7##D25538|ADCY7|113|adenylate cyclase 7	1.987095	0.0	denovo_WM_7:29:0.557	denovo_WM_7:30:0.279	denovo_WM_7:44:0.332	denovo_WM_7:45:0.610
chr19	58314983	58315101	reg1015033.p1	4.208	+	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	-33913	+	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	-34025	+	TSC_hg19_v1_chr19_+_58258208 BX957217 CR749390 CR936802 AK055448	-56830	+	AK097041 AK293445 NM_024762	11238	-	TSC_hg19_v1_chr19_+_58331098 AK095812 AK303856 U71363	16045	+	AK122919 NM_001204818 AK299091	26628	+	BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##BX957217|ZNF776|284309|zinc finger protein 776##CR749390|ZNF776|284309|zinc finger protein 776##CR936802|ZNF776|284309|zinc finger protein 776##AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552##U71363|LOC100293516|100293516|zinc finger protein##NM_001204818|LOC100293516|100293516|zinc finger protein##AK299091|LOC100293516|100293516|zinc finger protein	1.944687	0.0	denovo_WM_7:10:0.664	denovo_WM_7:-23:0.201	denovo_WM_7:-24:0.413	denovo_WM_7:-26:0.249
chr3	105472362	105472470	reg1001684.p2	4.208	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-51362	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-386594	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-386836	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	115391	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1487063	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1487176	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.0	0.0	
chr8	33881143	33881241	reg1013180.p1	4.208	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-423697	-	AB237597 AB103376 AY902194 BC001613 NM_024025 TSC_hg19_v1_chr8_-_33457473	-423733	-	TSC_hg19_v1_chr8_-_33457295 BC067804	-423905	-	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	1211795	+	NM_001031836 AK302391 BC028701	2760678	+	TSC_hg19_v1_chr8_-_37457377 AK025743	3576176	-	AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB237597|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB103376|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY902194|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC001613|DUSP26|78986|dual specificity phosphatase 26 (putative)##NM_024025|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AK025743|LOC157860|157860|uncharacterized LOC157860	0.0	0.0	
chr8	77950184	77950332	reg1013181.p1	4.208	+	NM_001172086 NM_001172087	-36979	-	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	-37849	-	AK131399 TSC_hg19_v1_chr8_+_77765961	-184369	+	NM_006823 NM_181839 S76965	1478077	+	TSC_hg19_v1_chr8_+_79578323 NM_016010 AK024711 AK313723 AF151820 BC009074 BC035905 CU679245	1628062	+	J04156 BC032487 AK226000 BC047698 AK291538 NM_000880 NM_001199886 NM_001199887 NM_001199888	1767390	-	NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##AK131399|ZFHX4|79776|zinc finger homeobox 4##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_016010|FAM164A|51101|family with sequence similarity 164, member A##AK024711|FAM164A|51101|family with sequence similarity 164, member A##AK313723|FAM164A|51101|family with sequence similarity 164, member A##AF151820|FAM164A|51101|family with sequence similarity 164, member A##BC009074|FAM164A|51101|family with sequence similarity 164, member A##BC035905|FAM164A|51101|family with sequence similarity 164, member A##J04156|IL7|3574|interleukin 7##BC032487|IL7|3574|interleukin 7##AK226000|IL7|3574|interleukin 7##BC047698|IL7|3574|interleukin 7##AK291538|IL7|3574|interleukin 7##NM_000880|IL7|3574|interleukin 7##NM_001199886|IL7|3574|interleukin 7##NM_001199887|IL7|3574|interleukin 7##NM_001199888|IL7|3574|interleukin 7	0.999408	0.0	denovo_WM_7:-1:0.739
chrX	34090228	34090335	reg1014586.p1	4.208	+	NM_000109	-732556	-	S60972 X14298 AK309142 TSC_hg19_v1_chrX_-_33229631 M18533 BC010932 NM_004006	-860731	-	NM_004010 S81419 NM_004009 S64152	-943738	-	BC026171 AK292354 NM_203408	60155	-	TSC_hg19_v1_chrX_-_34675406 BC039242 NM_031442	585127	-	BC035026 NM_152631 AK093101 AX747923 CU690032	870648	+	NM_000109|DMD|1756|dystrophin##S60972|DMD|1756|dystrophin##X14298|DMD|1756|dystrophin##AK309142|DMD|1756|dystrophin##M18533|DMD|1756|dystrophin##BC010932|DMD|1756|dystrophin##NM_004006|DMD|1756|dystrophin##NM_004010|DMD|1756|dystrophin##S81419|DMD|1756|dystrophin##NM_004009|DMD|1756|dystrophin##S64152|DMD|1756|dystrophin##BC026171|FAM47A|158724|family with sequence similarity 47, member A##AK292354|FAM47A|158724|family with sequence similarity 47, member A##NM_203408|FAM47A|158724|family with sequence similarity 47, member A##BC039242|TMEM47|83604|transmembrane protein 47##NM_031442|TMEM47|83604|transmembrane protein 47##BC035026|FAM47B|170062|family with sequence similarity 47, member B##NM_152631|FAM47B|170062|family with sequence similarity 47, member B##AK093101|FAM47B|170062|family with sequence similarity 47, member B	0.708296	0.0	denovo_WM_7:-11:0.220
chr10	25190399	25190524	reg1011468.p2	4.207	+	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	-177855	-	AK307604 TSC_hg19_v1_chr10_-_25012174	-178288	-	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-434992	+	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	51071	-	CU693144 DQ892076 DQ895269 BC064597 AK095021 NM_145010 AY454125 AK292495 BC026165	114513	-	NM_024838 TSC_hg19_v1_chr10_+_25305540 AK125249 BC035132 BX647989	115089	+	AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##DQ892076|ENKUR|219670|enkurin, TRPC channel interacting protein##DQ895269|ENKUR|219670|enkurin, TRPC channel interacting protein##AK095021|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_145010|ENKUR|219670|enkurin, TRPC channel interacting protein##AY454125|ENKUR|219670|enkurin, TRPC channel interacting protein##AK292495|ENKUR|219670|enkurin, TRPC channel interacting protein##BC026165|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_024838|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##AK125249|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BC035132|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BX647989|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)	0.031878	0.0	
chr11	73664679	73664799	reg1011324.p1	4.207	+	AY138810 NM_153614	-3376	+	BC028677 TSC_hg19_v1_chr11_+_73588043 AK021910 AK222501 NM_025155 AK316394 AK225520 BC045774 BC021541 BC028628 BC006142 CU675271 AF087895	-76694	+	TSC_hg19_v1_chr11_-_73587892 AL359618 AK000434 NM_016565 BC106036	-76843	-	U94592 BC011737 TSC_hg19_v1_chr11_-_73693862	29105	-	TSC_hg19_v1_chr11_-_73693886 AK222540 AK222557 NM_003355	29146	-	TSC_hg19_v1_chr11_-_73694300 AK025742	29604	-	AY138810|DNAJB13|374407|DnaJ (Hsp40) homolog, subfamily B, member 13##NM_153614|DNAJB13|374407|DnaJ (Hsp40) homolog, subfamily B, member 13##BC028677|PAAF1|80227|proteasomal ATPase-associated factor 1##AK021910|PAAF1|80227|proteasomal ATPase-associated factor 1##AK222501|PAAF1|80227|proteasomal ATPase-associated factor 1##NM_025155|PAAF1|80227|proteasomal ATPase-associated factor 1##AK316394|PAAF1|80227|proteasomal ATPase-associated factor 1##AK225520|PAAF1|80227|proteasomal ATPase-associated factor 1##BC045774|PAAF1|80227|proteasomal ATPase-associated factor 1##BC021541|PAAF1|80227|proteasomal ATPase-associated factor 1##BC028628|PAAF1|80227|proteasomal ATPase-associated factor 1##BC006142|PAAF1|80227|proteasomal ATPase-associated factor 1##AF087895|PAAF1|80227|proteasomal ATPase-associated factor 1##AL359618|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##AK000434|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##NM_016565|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##BC106036|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##BC011737|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##AK222540|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##AK222557|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##NM_003355|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)##AK025742|UCP2|7351|uncoupling protein 2 (mitochondrial, proton carrier)	0.044938	0.0	
chr17	61639303	61639434	reg1013630.p1	4.207	+	TSC_hg19_v1_chr17_+_61628000 DQ891233 DQ894417 AB590131	-11356	+	TSC_hg19_v1_chr17_+_61627929 U94747	-11424	+	TSC_hg19_v1_chr17_+_61627855 AK303212	-11504	+	TSC_hg19_v1_chr17_+_61678230 AK315375 NM_016360 AK094052 AX748431 BC005049	38864	+	TSC_hg19_v1_chr17_+_61678277 BC007744 CU675789	38991	+	TSC_hg19_v1_chr17_+_61699772 AX775739 AX775741 AK315305	60378	+	DQ891233|DCAF7|10238|DDB1 and CUL4 associated factor 7##DQ894417|DCAF7|10238|DDB1 and CUL4 associated factor 7##U94747|DCAF7|10238|DDB1 and CUL4 associated factor 7##AK303212|DCAF7|10238|DDB1 and CUL4 associated factor 7##AK315375|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##NM_016360|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AK094052|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##BC005049|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##BC007744|TACO1|51204|translational activator of mitochondrially encoded cytochrome c oxidase I##AX775739|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AX775741|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3##AK315305|MAP3K3|4215|mitogen-activated protein kinase kinase kinase 3	0.996252	0.0	denovo_WM_7:10:0.249	denovo_WM_7:11:0.249	denovo_WM_7:12:0.249	denovo_WM_7:13:0.249
chr2	190615830	190616010	reg1009495.p1	4.207	+	AK126073 NM_144708	-75210	+	TSC_hg19_v1_chr2_+_190539326 BC037215 AK307328 BC047413	-76560	+	NM_019048 AK000759 TSC_hg19_v1_chr2_+_190526184 BC001243	-89749	+	AK314565 NM_022353 AK055441	12017	-	NM_000534 NM_001128143 NM_001128144	32890	+	TSC_hg19_v1_chr2_-_190649062 AF151036 AF395704 AK313533 BC005200	33114	-	AK126073|ANKAR|150709|ankyrin and armadillo repeat containing##NM_144708|ANKAR|150709|ankyrin and armadillo repeat containing##BC037215|ANKAR|150709|ankyrin and armadillo repeat containing##AK307328|ANKAR|150709|ankyrin and armadillo repeat containing##BC047413|ANKAR|150709|ankyrin and armadillo repeat containing##NM_019048|ASNSD1|54529|asparagine synthetase domain containing 1##AK000759|ASNSD1|54529|asparagine synthetase domain containing 1##BC001243|ASNSD1|54529|asparagine synthetase domain containing 1##AK314565|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##NM_022353|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##AK055441|OSGEPL1|64172|O-sialoglycoprotein endopeptidase-like 1##NM_000534|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128143|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##NM_001128144|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AF151036|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF395704|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK313533|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##BC005200|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)	0.0	0.877909	CTCF.p2:88:0.878
chr2	208571828	208571922	reg1014041.p2	4.207	+	TSC_hg19_v1_chr2_-_208490039 BC009462 AF455817	-81792	-	NM_001127395 TSC_hg19_v1_chr2_-_208489987	-81886	-	AK093812 AX748320 BC033720 NM_145280	-82180	-	TSC_hg19_v1_chr2_+_208576363 AK097751 NM_001142300 NM_152523	4426	+	TSC_hg19_v1_chr2_+_208576365 BC047293	4520	+	TSC_hg19_v1_chr2_+_208576466 BC067253	4625	+	BC009462|METTL21A|151194|methyltransferase like 21A##AF455817|METTL21A|151194|methyltransferase like 21A##NM_001127395|METTL21A|151194|methyltransferase like 21A##AK093812|METTL21A|151194|methyltransferase like 21A##BC033720|METTL21A|151194|methyltransferase like 21A##NM_145280|METTL21A|151194|methyltransferase like 21A##AK097751|CCNYL1|151195|cyclin Y-like 1##NM_001142300|CCNYL1|151195|cyclin Y-like 1##NM_152523|CCNYL1|151195|cyclin Y-like 1##BC047293|CCNYL1|151195|cyclin Y-like 1##BC067253|CCNYL1|151195|cyclin Y-like 1	0.993592	0.0	denovo_WM_7:-36:0.790
chr5	16066563	16066662	reg1011804.p1	4.207	+	TSC_hg19_v1_chr5_+_15500770 AF199356 AB463041	-565836	+	BC075061 TSC_hg19_v1_chr5_+_15500760	-565864	+	BC136424 TSC_hg19_v1_chr5_+_15500549	-566068	+	NM_001102562	113284	-	TSC_hg19_v1_chr5_-_16465884 BC010545 BC008752 NM_033414 AY046059	399264	-	NM_019000	442494	-	AF199356|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC075061|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC136424|FBXL7|23194|F-box and leucine-rich repeat protein 7##NM_001102562|MARCH11|441061|membrane-associated ring finger (C3HC4) 11##BC010545|ZNF622|90441|zinc finger protein 622##BC008752|ZNF622|90441|zinc finger protein 622##NM_033414|ZNF622|90441|zinc finger protein 622##AY046059|ZNF622|90441|zinc finger protein 622##NM_019000|FAM134B|54463|family with sequence similarity 134, member B	0.0	0.0	
chr9	23735125	23735219	reg1008993.p2	4.207	+	AJ290954 TSC_hg19_v1_chr9_+_22447458 AK130018	-1287723	+	AB464510 TSC_hg19_v1_chr9_+_22447162	-1288059	+	TSC_hg19_v1_chr9_+_22446846 AK096011 NM_022160 BC130435 BC130437	-1288335	+	BC030692 NM_001171197	86305	-	TSC_hg19_v1_chr9_-_23821819 BC035004	86641	-	BC042393 NM_001171195 TSC_hg19_v1_chr9_-_23821847	86672	-	AJ290954|DMRTA1|63951|DMRT-like family A1##AK130018|DMRTA1|63951|DMRT-like family A1##AK096011|DMRTA1|63951|DMRT-like family A1##NM_022160|DMRTA1|63951|DMRT-like family A1##BC130435|DMRTA1|63951|DMRT-like family A1##BC130437|DMRTA1|63951|DMRT-like family A1##BC030692|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_001171197|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC035004|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC042393|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_001171195|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.9996	0.0	
chr1	17335749	17335909	reg1013308.p1	4.206	+	AK301655 NM_001135247 NM_017459	-27753	-	TSC_hg19_v1_chr1_-_17307116 BC028033 AK222751 BC015039 NM_001135248 NM_002403	-28680	-	TSC_hg19_v1_chr1_+_17248425 NM_014675	-87395	+	AL354615 AY461712 TSC_hg19_v1_chr1_-_17338424 BC030267 AK290210 NM_001141973 NM_001141974 NM_022089	2554	-	DQ403007 TSC_hg19_v1_chr1_-_17380528 AK312056 U17248 BC007840 NM_003000	44746	-	AB587350 AB023211 AB030176 BC009701 TSC_hg19_v1_chr1_-_17445947 AK295783 NM_007365	110078	-	AK301655|MFAP2|4237|microfibrillar-associated protein 2##NM_001135247|MFAP2|4237|microfibrillar-associated protein 2##NM_017459|MFAP2|4237|microfibrillar-associated protein 2##BC028033|MFAP2|4237|microfibrillar-associated protein 2##AK222751|MFAP2|4237|microfibrillar-associated protein 2##BC015039|MFAP2|4237|microfibrillar-associated protein 2##NM_001135248|MFAP2|4237|microfibrillar-associated protein 2##NM_002403|MFAP2|4237|microfibrillar-associated protein 2##NM_014675|CROCC|9696|ciliary rootlet coiled-coil, rootletin##AL354615|ATP13A2|23400|ATPase type 13A2##AY461712|ATP13A2|23400|ATPase type 13A2##BC030267|ATP13A2|23400|ATPase type 13A2##AK290210|ATP13A2|23400|ATPase type 13A2##NM_001141973|ATP13A2|23400|ATPase type 13A2##NM_001141974|ATP13A2|23400|ATPase type 13A2##NM_022089|ATP13A2|23400|ATPase type 13A2##DQ403007|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AK312056|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##U17248|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##BC007840|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##NM_003000|SDHB|6390|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)##AB023211|PADI2|11240|peptidyl arginine deiminase, type II##AB030176|PADI2|11240|peptidyl arginine deiminase, type II##BC009701|PADI2|11240|peptidyl arginine deiminase, type II##AK295783|PADI2|11240|peptidyl arginine deiminase, type II##NM_007365|PADI2|11240|peptidyl arginine deiminase, type II	0.999179	0.0	
chr1	226595052	226595146	reg1014223.p1	4.206	+	TSC_hg19_v1_chr1_-_226497442 AY166859 BC065302 AY166858	-97607	-	BC045625 NM_173083	-97902	-	TSC_hg19_v1_chr1_-_226496839 AY786184 BC043444 BX537869 AK126177 AF190323 AF190324 AK308823	-98203	-	TSC_hg19_v1_chr1_-_226595655 DQ891636 DQ894826 BC021045	507	-	TSC_hg19_v1_chr1_-_226595717 AK312339 J03473	606	-	TSC_hg19_v1_chr1_-_226595759 M18112 BC018620 AK225654	656	-	AY166859|LIN9|286826|lin-9 homolog (C. elegans)##BC065302|LIN9|286826|lin-9 homolog (C. elegans)##AY166858|LIN9|286826|lin-9 homolog (C. elegans)##BC045625|LIN9|286826|lin-9 homolog (C. elegans)##NM_173083|LIN9|286826|lin-9 homolog (C. elegans)##AY786184|LIN9|286826|lin-9 homolog (C. elegans)##BC043444|LIN9|286826|lin-9 homolog (C. elegans)##BX537869|LIN9|286826|lin-9 homolog (C. elegans)##AK126177|LIN9|286826|lin-9 homolog (C. elegans)##AF190323|LIN9|286826|lin-9 homolog (C. elegans)##AF190324|LIN9|286826|lin-9 homolog (C. elegans)##AK308823|LIN9|286826|lin-9 homolog (C. elegans)##DQ891636|PARP1|142|poly (ADP-ribose) polymerase 1##DQ894826|PARP1|142|poly (ADP-ribose) polymerase 1##BC021045|PARP1|142|poly (ADP-ribose) polymerase 1##AK312339|PARP1|142|poly (ADP-ribose) polymerase 1##J03473|PARP1|142|poly (ADP-ribose) polymerase 1##M18112|PARP1|142|poly (ADP-ribose) polymerase 1##BC018620|PARP1|142|poly (ADP-ribose) polymerase 1##AK225654|PARP1|142|poly (ADP-ribose) polymerase 1	0.990038	0.0	denovo_WM_7:-15:0.605
chr1	27580055	27580198	reg1002464.p3	4.206	+	TSC_hg19_v1_chr1_+_27561153 BC032523	-18964	+	TSC_hg19_v1_chr1_+_27561124 AK315564	-18999	+	NM_015023 TSC_hg19_v1_chr1_+_27561056	-19092	+	TSC_hg19_v1_chr1_+_27648669 NM_032125 AK313110 AK303821	68525	+	AL136683 BC011579 BC090039 TSC_hg19_v1_chr1_+_27648745	68607	+	TSC_hg19_v1_chr1_+_27648756 EU831420 EU831513 AF251699 AK222642 AK307077 BX648289	68690	+	BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_032125|TMEM222|84065|transmembrane protein 222##AK313110|TMEM222|84065|transmembrane protein 222##AK303821|TMEM222|84065|transmembrane protein 222##AL136683|TMEM222|84065|transmembrane protein 222##BC011579|TMEM222|84065|transmembrane protein 222##BC090039|TMEM222|84065|transmembrane protein 222##EU831420|TMEM222|84065|transmembrane protein 222##EU831513|TMEM222|84065|transmembrane protein 222##AF251699|TMEM222|84065|transmembrane protein 222##AK222642|TMEM222|84065|transmembrane protein 222##AK307077|TMEM222|84065|transmembrane protein 222##BX648289|LOC644961|644961|actin, beta pseudogene	0.0	0.0	
chr6	10723707	10723887	reg1011395.p2	4.206	+	NM_001165258 NM_016462 TSC_hg19_v1_chr6_+_10723398 AF151028 BC010086 AK310191 AK309591 AF164962 BC002496 AK223462	-499	+	TSC_hg19_v1_chr6_+_10695204 BC010907 NM_017906 AB527917 DQ892798 DQ896045	-28611	+	BC016820 NM_001145020	-28960	-	AK311340 TSC_hg19_v1_chr6_+_10748043 NM_001127711 NM_030969 AK294018 BC013913 AK291883 AK294152 BC007080 BC001033 BC071660	24243	+	AK314408 AB593146 AK097831 AK310329 TSC_hg19_v1_chr6_-_10838761 BC033002 NM_001242385 NM_001242957 NM_005906	114952	-	AF091149 BC069603 AF079550 BC117316 BC117318 NM_004752	158282	-	NM_001165258|TMEM14C|51522|transmembrane protein 14C##NM_016462|TMEM14C|51522|transmembrane protein 14C##AF151028|TMEM14C|51522|transmembrane protein 14C##BC010086|TMEM14C|51522|transmembrane protein 14C##AK310191|TMEM14C|51522|transmembrane protein 14C##AK309591|TMEM14C|51522|transmembrane protein 14C##AF164962|TMEM14C|51522|transmembrane protein 14C##BC002496|TMEM14C|51522|transmembrane protein 14C##AK223462|TMEM14C|51522|transmembrane protein 14C##BC010907|PAK1IP1|55003|PAK1 interacting protein 1##NM_017906|PAK1IP1|55003|PAK1 interacting protein 1##DQ892798|PAK1IP1|55003|PAK1 interacting protein 1##DQ896045|PAK1IP1|55003|PAK1 interacting protein 1##BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52##AK311340|TMEM14B|81853|transmembrane protein 14B##NM_001127711|TMEM14B|81853|transmembrane protein 14B##NM_030969|TMEM14B|81853|transmembrane protein 14B##BC013913|TMEM14B|81853|transmembrane protein 14B##AK291883|TMEM14B|81853|transmembrane protein 14B##AK294152|TMEM14B|81853|transmembrane protein 14B##BC007080|TMEM14B|81853|transmembrane protein 14B##BC001033|TMEM14B|81853|transmembrane protein 14B##BC071660|TMEM14B|81853|transmembrane protein 14B##AK314408|MAK|4117|male germ cell-associated kinase##AB593146|MAK|4117|male germ cell-associated kinase##AK097831|MAK|4117|male germ cell-associated kinase##AK310329|MAK|4117|male germ cell-associated kinase##BC033002|MAK|4117|male germ cell-associated kinase##NM_001242385|MAK|4117|male germ cell-associated kinase##NM_001242957|MAK|4117|male germ cell-associated kinase##NM_005906|MAK|4117|male germ cell-associated kinase##AF091149|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC069603|GCM2|9247|glial cells missing homolog 2 (Drosophila)##AF079550|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117316|GCM2|9247|glial cells missing homolog 2 (Drosophila)##BC117318|GCM2|9247|glial cells missing homolog 2 (Drosophila)##NM_004752|GCM2|9247|glial cells missing homolog 2 (Drosophila)	0.997869	0.0	denovo_WM_7:38:0.310	denovo_WM_7:39:0.310	denovo_WM_7:40:0.310
chr6	116731411	116731544	reg1000756.p2	4.206	+	TSC_hg19_v1_chr6_-_116692863 AK298559 AK316303	-38608	-	TSC_hg19_v1_chr6_+_116692109 NM_013352 AF098066	-39334	+	BC039245 NM_001080976 BC043526	-130156	+	NM_001010919	51078	+	BC032556 NM_153711 AK094140 AK315572	101344	+	AK300309 AY358252 NM_153036 BC057769 AK056801	118731	+	AK298559|LOC100287467|100287467|uncharacterized LOC100287467##AK316303|LOC100287467|100287467|uncharacterized LOC100287467##NM_013352|DSE|29940|dermatan sulfate epimerase##AF098066|DSE|29940|dermatan sulfate epimerase##BC039245|DSE|29940|dermatan sulfate epimerase##NM_001080976|DSE|29940|dermatan sulfate epimerase##BC043526|DSE|29940|dermatan sulfate epimerase##NM_001010919|FAM26F|441168|family with sequence similarity 26, member F##BC032556|FAM26E|254228|family with sequence similarity 26, member E##NM_153711|FAM26E|254228|family with sequence similarity 26, member E##AK094140|FAM26E|254228|family with sequence similarity 26, member E##AK315572|FAM26E|254228|family with sequence similarity 26, member E##AK300309|FAM26D|221301|family with sequence similarity 26, member D##AY358252|FAM26D|221301|family with sequence similarity 26, member D##NM_153036|FAM26D|221301|family with sequence similarity 26, member D##BC057769|FAM26D|221301|family with sequence similarity 26, member D##AK056801|FAM26D|221301|family with sequence similarity 26, member D	0.0	0.0	
chr11	1872199	1872379	reg1004305.p3	4.205	+	NM_001145841	-10858	+	BC032148 NM_001145829	-11571	+	NM_003282	-12057	+	NM_002339 TSC_hg19_v1_chr11_+_1874296 AK222733 BC001785 X55188 AK290279 S67783 CR541728 CR541754 CU674886	1997	+	AK092071 AX747343 NM_001242932	14105	+	NM_001013253	17613	+	NM_001145841|TNNI2|7136|troponin I type 2 (skeletal, fast)##BC032148|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_001145829|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_003282|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_002339|LSP1|4046|lymphocyte-specific protein 1##AK222733|LSP1|4046|lymphocyte-specific protein 1##BC001785|LSP1|4046|lymphocyte-specific protein 1##X55188|LSP1|4046|lymphocyte-specific protein 1##AK290279|LSP1|4046|lymphocyte-specific protein 1##S67783|LSP1|4046|lymphocyte-specific protein 1##CR541728|LSP1|4046|lymphocyte-specific protein 1##CR541754|LSP1|4046|lymphocyte-specific protein 1##AK092071|LSP1|4046|lymphocyte-specific protein 1##NM_001242932|LSP1|4046|lymphocyte-specific protein 1##NM_001013253|LSP1|4046|lymphocyte-specific protein 1	0.893527	0.0	denovo_WM_7:2:0.602	denovo_WM_7:8:0.202
chr17	26399119	26399225	reg1010125.p1	4.205	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-29171	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-29519	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-178781	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	247021	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	263314	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	263531	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.987046	0.0	denovo_WM_7:21:0.880
chr2	218911830	218911924	reg1006219.p3	4.205	+	TSC_hg19_v1_chr2_-_218867719 AK309785	-44154	-	AK001785 TSC_hg19_v1_chr2_-_218843551	-68331	-	TSC_hg19_v1_chr2_-_218808794 BC140942 AK300345 NM_022648	-103096	-	NM_198483	21860	+	U11872 NM_001168298	78127	+	NM_001557 U11874 L19593 U11875 BC037961 AK290906 AK312664	78912	+	AK309785|TNS1|7145|tensin 1##AK001785|TNS1|7145|tensin 1##BC140942|TNS1|7145|tensin 1##AK300345|TNS1|7145|tensin 1##NM_022648|TNS1|7145|tensin 1##NM_198483|RUFY4|285180|RUN and FYVE domain containing 4##U11872|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001168298|CXCR2|3579|chemokine (C-X-C motif) receptor 2##NM_001557|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11874|CXCR2|3579|chemokine (C-X-C motif) receptor 2##L19593|CXCR2|3579|chemokine (C-X-C motif) receptor 2##U11875|CXCR2|3579|chemokine (C-X-C motif) receptor 2##BC037961|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK290906|CXCR2|3579|chemokine (C-X-C motif) receptor 2##AK312664|CXCR2|3579|chemokine (C-X-C motif) receptor 2	0.999785	0.0	
chr22	24108585	24108676	reg1012732.p1	4.205	+	AK093880 AX748349 NM_182520	-3423	+	CU013206 CU013494 DQ893106 DQ896379 CR456610 AK312098 AF163825 AY359000 NM_013378 BC020666	-12028	-	CR456615 TSC_hg19_v1_chr22_-_24093285 BC040161 NM_021916	-15471	-	TSC_hg19_v1_chr22_-_24110129 BC053570 AK289560 BC065232 NM_213720	1482	-	AK075448 AK129792 NM_005940 X57766 BC057788	6415	+	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	20619	+	AK093880|C22orf15|150248|chromosome 22 open reading frame 15##NM_182520|C22orf15|150248|chromosome 22 open reading frame 15##CU013206|VPREB3|29802|pre-B lymphocyte 3##CU013494|VPREB3|29802|pre-B lymphocyte 3##DQ893106|VPREB3|29802|pre-B lymphocyte 3##DQ896379|VPREB3|29802|pre-B lymphocyte 3##CR456610|VPREB3|29802|pre-B lymphocyte 3##AK312098|VPREB3|29802|pre-B lymphocyte 3##AF163825|VPREB3|29802|pre-B lymphocyte 3##AY359000|VPREB3|29802|pre-B lymphocyte 3##NM_013378|VPREB3|29802|pre-B lymphocyte 3##BC020666|VPREB3|29802|pre-B lymphocyte 3##CR456615|ZNF70|7621|zinc finger protein 70##BC040161|ZNF70|7621|zinc finger protein 70##NM_021916|ZNF70|7621|zinc finger protein 70##BC053570|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK289560|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##BC065232|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##NM_213720|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	0.998167	0.0	
chr22	42336322	42336399	reg1010836.p2	4.205	+	EU035297 NM_001110215	-138	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-13561	-	NM_001207020	-25690	-	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	6763	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	36548	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	58415	+	EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_001207020|SHISA8|440829|shisa homolog 8 (Xenopus laevis)##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like	0.765896	0.0	denovo_WM_7:38:0.205	denovo_WM_7:39:0.477
chr3	196370123	196370246	reg1006380.p2	4.205	+	BC044233 NM_198565 TSC_hg19_v1_chr3_+_196366658 AY358322	-3522	+	TSC_hg19_v1_chr3_+_196366647 BC034704	-3539	+	TSC_hg19_v1_chr3_+_196295733 NM_001105573	-74452	+	AK058155 TSC_hg19_v1_chr3_-_196439156 BC007827 AY099509 NM_032898 AK314070	68932	-	TSC_hg19_v1_chr3_+_196439214 NM_001166304 NM_017861 AK000529 BC022542	69075	+	TSC_hg19_v1_chr3_+_196466727 NM_002577	96541	+	BC044233|LRRC33|375387|leucine rich repeat containing 33##NM_198565|LRRC33|375387|leucine rich repeat containing 33##AY358322|LRRC33|375387|leucine rich repeat containing 33##BC034704|LRRC33|375387|leucine rich repeat containing 33##NM_001105573|FBXO45|200933|F-box protein 45##AK058155|CEP19|84984|centrosomal protein 19kDa##BC007827|CEP19|84984|centrosomal protein 19kDa##AY099509|CEP19|84984|centrosomal protein 19kDa##NM_032898|CEP19|84984|centrosomal protein 19kDa##AK314070|CEP19|84984|centrosomal protein 19kDa##NM_001166304|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_017861|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##AK000529|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##BC022542|PIGX|54965|phosphatidylinositol glycan anchor biosynthesis, class X##NM_002577|PAK2|5062|p21 protein (Cdc42/Rac)-activated kinase 2	0.0	0.0	
chr3	57269373	57269476	reg1014208.p2	4.205	+	TSC_hg19_v1_chr3_+_57261793 AK310716 BC010911 AF169797 AF424738 AB037849 AB587353 CU688526	-7580	+	AK299008 TSC_hg19_v1_chr3_+_57261776	-7648	+	TSC_hg19_v1_chr3_+_57261766 BC028599 NM_012096	-7677	+	AF403032 BC114953 NM_130387	43555	-	AL832472 NM_001142733	57285	-	AK126276 NM_178504 NM_198564	260644	-	AK310716|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##BC010911|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AF169797|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AF424738|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AB037849|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AK299008|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##BC028599|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##NM_012096|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AF403032|ASB14|142686|ankyrin repeat and SOCS box containing 14##BC114953|ASB14|142686|ankyrin repeat and SOCS box containing 14##NM_130387|ASB14|142686|ankyrin repeat and SOCS box containing 14##AL832472|ASB14|142686|ankyrin repeat and SOCS box containing 14##NM_001142733|ASB14|142686|ankyrin repeat and SOCS box containing 14##AK126276|DNAH12|201625|dynein, axonemal, heavy chain 12##NM_178504|DNAH12|201625|dynein, axonemal, heavy chain 12##NM_198564|DNAH12|201625|dynein, axonemal, heavy chain 12	0.956998	0.0	denovo_WM_7:4:0.406	denovo_WM_7:6:0.228	denovo_WM_7:7:0.215
chr6	27440984	27441163	reg1014575.p1	4.205	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-372	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-84518	+	AF352327 AF336874 BC107050 NM_032030	-148515	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	334650	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	334868	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	336709	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.0	0.0	
chr10	6370925	6371060	reg1014198.p2	4.204	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-126116	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-184080	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-184108	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	251269	-	TSC_hg19_v1_chr10_+_6622460 AY007155	251488	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1080258	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.988259	0.0	denovo_WM_7:19:0.462	denovo_WM_7:20:0.412
chr1	26659512	26659679	reg1017081.p1	4.204	+	NM_145345 AK097368	-14791	-	TSC_hg19_v1_chr1_+_26644458 BC000644 X62466 X67699 BT007116 CR456874	-15112	+	TSC_hg19_v1_chr1_+_26644396 NM_001803 AK311554	-15195	+	AK000902 NM_001039775	21025	-	BC028731 BC029505 NM_001114759 NM_173574	39650	-	TSC_hg19_v1_chr1_+_26737262 BC028566 NM_024674	77656	+	NM_145345|UBXN11|91544|UBX domain protein 11##AK097368|UBXN11|91544|UBX domain protein 11##BC000644|CD52|1043|CD52 molecule##X62466|CD52|1043|CD52 molecule##X67699|CD52|1043|CD52 molecule##BT007116|CD52|1043|CD52 molecule##CR456874|CD52|1043|CD52 molecule##NM_001803|CD52|1043|CD52 molecule##AK000902|AIM1L|55057|absent in melanoma 1-like##NM_001039775|AIM1L|55057|absent in melanoma 1-like##BC028731|ZNF683|257101|zinc finger protein 683##BC029505|ZNF683|257101|zinc finger protein 683##NM_001114759|ZNF683|257101|zinc finger protein 683##NM_173574|ZNF683|257101|zinc finger protein 683##BC028566|LIN28A|79727|lin-28 homolog A (C. elegans)##NM_024674|LIN28A|79727|lin-28 homolog A (C. elegans)	1.99283	0.0	denovo_WM_7:-64:0.433	denovo_WM_7:-65:0.289	denovo_WM_7:-80:0.320	denovo_WM_7:-81:0.465
chr13	52018287	52018418	reg1013989.p2	4.204	+	AX772926 NM_001101320 AM402969	-103157	+	TSC_hg19_v1_chr13_+_51796507 BC034497 NM_001242312 NM_145019 AK055269 AK096364 BC051771 AB527542 CU690842	-221836	+	BC001397 BC005088 BC007332 BC010174 TSC_hg19_v1_chr13_+_51484193	-534195	+	AF097645 BC039829 BC018725 BC013358 BC032386 TSC_hg19_v1_chr13_-_52027173 AK296801 AK304218	8801	-	NM_001039937 NM_001039938 NM_012141 AL833524 TSC_hg19_v1_chr13_-_52027409	8990	-	TSC_hg19_v1_chr13_+_52027481 BC030118 BC045725	9121	+	AX772926|SERPINE3|647174|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3##NM_001101320|SERPINE3|647174|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3##AM402969|SERPINE3|647174|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3##BC034497|FAM124A|220108|family with sequence similarity 124A##NM_001242312|FAM124A|220108|family with sequence similarity 124A##NM_145019|FAM124A|220108|family with sequence similarity 124A##AK055269|FAM124A|220108|family with sequence similarity 124A##AK096364|FAM124A|220108|family with sequence similarity 124A##BC051771|FAM124A|220108|family with sequence similarity 124A##BC001397|RNASEH2B|79621|ribonuclease H2, subunit B##BC005088|RNASEH2B|79621|ribonuclease H2, subunit B##BC007332|RNASEH2B|79621|ribonuclease H2, subunit B##BC010174|RNASEH2B|79621|ribonuclease H2, subunit B##AF097645|INTS6|26512|integrator complex subunit 6##BC039829|INTS6|26512|integrator complex subunit 6##BC018725|INTS6|26512|integrator complex subunit 6##BC013358|INTS6|26512|integrator complex subunit 6##BC032386|INTS6|26512|integrator complex subunit 6##AK296801|INTS6|26512|integrator complex subunit 6##AK304218|INTS6|26512|integrator complex subunit 6##NM_001039937|INTS6|26512|integrator complex subunit 6##NM_001039938|INTS6|26512|integrator complex subunit 6##NM_012141|INTS6|26512|integrator complex subunit 6##AL833524|INTS6|26512|integrator complex subunit 6	1.996593	0.0	denovo_WM_7:44:0.469	denovo_WM_7:45:0.321	denovo_WM_7:60:0.299	denovo_WM_7:61:0.447
chr14	95624928	95625044	reg1015891.p1	4.204	+	TSC_hg19_v1_chr14_+_95624023 BC040596	-965	+	TSC_hg19_v1_chr14_-_95623867 BC046934 AB023145 BC150287 NM_177438	-1194	-	AY929254 AY929255 AY929256 TSC_hg19_v1_chr14_-_95623633	-1364	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	161197	-	AK131436 BC146604 BX248076 NM_152592	317118	-	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	376029	-	BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)##BC046934|DICER1|23405|dicer 1, ribonuclease type III##AB023145|DICER1|23405|dicer 1, ribonuclease type III##BC150287|DICER1|23405|dicer 1, ribonuclease type III##NM_177438|DICER1|23405|dicer 1, ribonuclease type III##AY929254|DICER1|23405|dicer 1, ribonuclease type III##AY929255|DICER1|23405|dicer 1, ribonuclease type III##AY929256|DICER1|23405|dicer 1, ribonuclease type III##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)	0.976514	0.0	denovo_WM_7:50:0.451	denovo_WM_7:51:0.451
chr19	2740163	2740263	reg1014466.p1	4.204	+	TSC_hg19_v1_chr19_-_2740065 NM_144564 NM_213568	-146	-	TSC_hg19_v1_chr19_-_2740016 AK302600 BC020571 AK002044	-185	-	TSC_hg19_v1_chr19_-_2740007 BC005869	-209	-	TSC_hg19_v1_chr19_-_2783272 AJ133129 BC005165 BC008885 BC000390 BC002989	43049	-	TSC_hg19_v1_chr19_-_2783313 AL050156	43101	-	AK293535 TSC_hg19_v1_chr19_-_2783326	43114	-	NM_144564|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##NM_213568|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK302600|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC020571|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK002044|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC005869|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AJ133129|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC005165|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC008885|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC000390|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##BC002989|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AL050156|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha##AK293535|SGTA|6449|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	0.0	0.0	
chr6	102374168	102374347	reg1015371.p1	4.204	+	NM_001166247 NM_021956 NM_175768 AK291965 AK289542 BC063814	-527352	+	BC037954 TSC_hg19_v1_chr6_+_101846686	-527580	+	HM149340 TSC_hg19_v1_chr6_+_101841583	-532751	+	TSC_hg19_v1_chr6_-_105307736 AK291760	2933468	-	TSC_hg19_v1_chr6_-_105307774 BC038119 BC034982	2933505	-	TSC_hg19_v1_chr6_-_105307783 AK131207 NM_020771	2933531	-	NM_001166247|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##NM_021956|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##NM_175768|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK291965|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK289542|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##BC063814|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##BC037954|GRIK2|2898|glutamate receptor, ionotropic, kainate 2##AK291760|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##BC038119|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##BC034982|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##AK131207|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1##NM_020771|HACE1|57531|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	0.016757	0.0	
chr6	151237233	151237413	reg1013682.p1	4.204	+	TSC_hg19_v1_chr6_+_151187310 AK315378 NM_001242768	-49934	+	TSC_hg19_v1_chr6_+_151187064 AL117452	-50222	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	-50402	+	TSC_hg19_v1_chr6_+_151561133 BC047728 NM_005100	323791	+	U81607 TSC_hg19_v1_chr6_+_151561544 AB210003 BC046095 AK307578	324205	+	TSC_hg19_v1_chr6_+_151561578 BC006094	324258	+	AK315378|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242768|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC047728|AKAP12|9590|A kinase (PRKA) anchor protein 12##NM_005100|AKAP12|9590|A kinase (PRKA) anchor protein 12##U81607|AKAP12|9590|A kinase (PRKA) anchor protein 12##AB210003|AKAP12|9590|A kinase (PRKA) anchor protein 12##BC046095|AKAP12|9590|A kinase (PRKA) anchor protein 12##AK307578|AKAP12|9590|A kinase (PRKA) anchor protein 12	0.0	0.0	
chr1	211854402	211854582	reg1012273.p2	4.203	+	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-5584	-	TSC_hg19_v1_chr1_-_211752056 BC121015 BC121016 NM_021194	-102404	-	AB451467 TSC_hg19_v1_chr1_-_211752048	-102492	-	BC034621 TSC_hg19_v1_chr1_-_212003681	149256	-	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	149638	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	354398	-	BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC121015|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC121016|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##NM_021194|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##AB451467|SLC30A1|7779|solute carrier family 30 (zinc transporter), member 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7	0.010891	0.0	
chr16	89451151	89451273	reg1011766.p2	4.203	+	AK293862 NM_001242885	-63672	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-100256	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-101138	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	105719	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	123602	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	175853	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	1.990388	0.0	denovo_WM_7:78:0.819	denovo_WM_7:93:0.205	denovo_WM_7:94:0.213	denovo_WM_7:95:0.221	denovo_WM_7:96:0.357
chr21	32593312	32593378	reg1011676.p1	4.203	+	AB096964 NM_001099219	-182551	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-339487	-	AJ457063 AB096962 NM_181606	-391357	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	338013	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	438662	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	480773	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.906872	0.0	denovo_WM_7:21:0.836
chr5	61439600	61439711	reg1016566.p2	4.203	+	AK094862 NM_173667	-506020	+	TSC_hg19_v1_chr5_+_60628085 NM_020928	-811557	+	TSC_hg19_v1_chr5_-_60458296 BC103711 BX648459 BC066550 BX538015 AK291180 NM_001048249	-981388	-	TSC_hg19_v1_chr5_+_61601970 NM_001098511 NM_001243952 NM_001243953 NM_004520	162318	+	TSC_hg19_v1_chr5_+_61602066 BC047544	162427	+	TSC_hg19_v1_chr5_+_61602278 AK297347 AK307880 EF560716 EF560728 EU832810 GQ129246 AK315866	162615	+	AK094862|C5orf64|285668|chromosome 5 open reading frame 64##NM_173667|C5orf64|285668|chromosome 5 open reading frame 64##NM_020928|ZSWIM6|57688|zinc finger, SWIM-type containing 6##BC103711|C5orf43|643155|chromosome 5 open reading frame 43##BX648459|C5orf43|643155|chromosome 5 open reading frame 43##BC066550|C5orf43|643155|chromosome 5 open reading frame 43##BX538015|C5orf43|643155|chromosome 5 open reading frame 43##AK291180|C5orf43|643155|chromosome 5 open reading frame 43##NM_001048249|C5orf43|643155|chromosome 5 open reading frame 43##NM_001098511|KIF2A|3796|kinesin heavy chain member 2A##NM_001243952|KIF2A|3796|kinesin heavy chain member 2A##NM_001243953|KIF2A|3796|kinesin heavy chain member 2A##NM_004520|KIF2A|3796|kinesin heavy chain member 2A##BC047544|KIF2A|3796|kinesin heavy chain member 2A##AK297347|KIF2A|3796|kinesin heavy chain member 2A##AK307880|KIF2A|3796|kinesin heavy chain member 2A##EF560716|KIF2A|3796|kinesin heavy chain member 2A##EF560728|KIF2A|3796|kinesin heavy chain member 2A##EU832810|KIF2A|3796|kinesin heavy chain member 2A##GQ129246|KIF2A|3796|kinesin heavy chain member 2A##AK315866|KIF2A|3796|kinesin heavy chain member 2A	0.997216	0.81866	CTCF.p2:-2:0.819	denovo_WM_7:-29:0.911
chr7	47709901	47709981	reg1010144.p2	4.203	+	AK126096 NM_001123065	-15100	+	TSC_hg19_v1_chr7_-_47622186 AB208995	-87755	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	-88158	-	AK024728 NM_025031 BC113679 BC113681 AK092057 AX747337	124997	+	AB061683 NM_138295	278112	-	BT019481 BT019482 CR536552 Y16893 AB463759 BC007013 TSC_hg19_v1_chr7_-_48019149 AK294117 AK290459 AF076844 AF110393	309211	-	AK126096|C7orf65|401335|chromosome 7 open reading frame 65##NM_001123065|C7orf65|401335|chromosome 7 open reading frame 65##AB208995|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3##AK024728|C7orf69|80099|chromosome 7 open reading frame 69##NM_025031|C7orf69|80099|chromosome 7 open reading frame 69##BC113679|C7orf69|80099|chromosome 7 open reading frame 69##BC113681|C7orf69|80099|chromosome 7 open reading frame 69##AK092057|PKD1L1|168507|polycystic kidney disease 1 like 1##AB061683|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_138295|PKD1L1|168507|polycystic kidney disease 1 like 1##BT019481|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BT019482|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##CR536552|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##Y16893|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007013|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK294117|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK290459|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF076844|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF110393|HUS1|3364|HUS1 checkpoint homolog (S. pombe)	0.999054	0.0	
chr11	65276022	65276162	reg1009026.p2	4.202	+	TSC_hg19_v1_chr11_+_65271764 AF001540	-4582	+	TSC_hg19_v1_chr11_+_65268717 BC063689 AK130345	-7575	+	TSC_hg19_v1_chr11_+_65267017 AF001541	-9000	+	TSC_hg19_v1_chr11_+_65292533 NM_001048218 NM_020680	16445	+	TSC_hg19_v1_chr11_+_65292576 AF297709 BC069233 AK314945 AK302198 AB047077 AB051427 AB051428	16508	+	TSC_hg19_v1_chr11_-_65314049 AK090750	38017	-	BC063689|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##AK130345|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##NM_001048218|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##NM_020680|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AF297709|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##BC069233|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AK314945|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AK302198|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AB047077|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AB051427|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AB051428|SCYL1|57410|SCY1-like 1 (S. cerevisiae)##AK090750|LTBP3|4054|latent transforming growth factor beta binding protein 3	0.996095	0.0	
chr2	25948348	25948503	reg1015480.p2	4.202	+	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	-52024	-	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-382963	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-383062	-	AB385496 TSC_hg19_v1_chr2_-_26101159	152704	-	TSC_hg19_v1_chr2_-_26101174 AB084279	152748	-	TSC_hg19_v1_chr2_-_26101321 AB051472 NM_018263	152889	-	AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)##AB051472|ASXL2|55252|additional sex combs like 2 (Drosophila)##NM_018263|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.999919	0.0	
chr3	105572749	105572927	reg1016500.p1	4.202	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-151784	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-487016	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-487258	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	14969	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1386641	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1386754	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.028455	0.0	
chr5	158426028	158426147	reg1016157.p1	4.202	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1139997	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1241707	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1255347	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	100370	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	100655	-	AK304228 NM_001199382	208561	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.995892	0.0	denovo_WM_7:10:0.310	denovo_WM_7:11:0.388	denovo_WM_7:12:0.298
chr6	116330198	116330295	reg1010523.p1	4.202	+	AF503292 NM_153612 BC093911 BC093913	-1946222	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-2037910	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	-2037974	-	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	51636	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	91763	+	AK097758 TSC_hg19_v1_chr6_-_116422450	92184	-	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1	0.665865	0.010777	denovo_WM_7:-9:0.205	denovo_WM_7:-10:0.337
chr9	127263220	127263399	reg1016335.p1	4.202	+	AY278562 NM_001161808	-49887	+	U44425 AB464089 BT007218 CR456721 AK223007 TSC_hg19_v1_chr9_-_127177719 BC000509 AK223356 BC008414 D38048 AK098757 AK303460 AK314302 GU727627 NM_002799 AK308756	-85589	-	TSC_hg19_v1_chr9_+_127119114 BC042968	-144140	+	TSC_hg19_v1_chr9_-_127269711 BC032501 NM_004959	6395	-	AK021895 AB074162 BC030772 TSC_hg19_v1_chr9_+_127420713 AB593023	157395	+	HQ692858 HQ709185 TSC_hg19_v1_chr9_-_127533591 U80802 AF004291 NM_001489 NM_033334 S83309 BC030600 BC042395 BC042406	270201	-	AY278562|GPR144|347088|G protein-coupled receptor 144##NM_001161808|GPR144|347088|G protein-coupled receptor 144##BT007218|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##CR456721|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK223007|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##BC000509|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK223356|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##BC008414|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##D38048|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK098757|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK303460|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK314302|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##GU727627|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##NM_002799|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##AK308756|PSMB7|5695|proteasome (prosome, macropain) subunit, beta type, 7##BC032501|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##NM_004959|NR5A1|2516|nuclear receptor subfamily 5, group A, member 1##AB593023|MIR181A2HG|100379345|MIR181A2 host gene (non-protein coding)##HQ692858|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##HQ709185|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##U80802|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##AF004291|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_001489|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##NM_033334|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##S83309|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC030600|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042395|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1##BC042406|NR6A1|2649|nuclear receptor subfamily 6, group A, member 1	0.984326	0.0	denovo_WM_7:-6:0.984
chr10	49545308	49545488	reg1012934.p1	4.201	+	TSC_hg19_v1_chr10_+_49514722 AK292523	-30612	+	CR749241 NM_001018071	-62472	-	BC146955 BC146968 BC146972 BC146989 BC146990 BC146991 BC147022 BC147026 BC171871 NM_001137548 NM_001137549 NM_001137556	-337577	-	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	64274	+	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	267689	-	TSC_hg19_v1_chr10_-_49864302 AK055937	318907	-	AK292523|MAPK8|5599|mitogen-activated protein kinase 8##CR749241|FRMPD2|143162|FERM and PDZ domain containing 2##NM_001018071|FRMPD2|143162|FERM and PDZ domain containing 2##BC146955|FAM25C|644054|family with sequence similarity 25, member C##BC146968|FAM25C|644054|family with sequence similarity 25, member C##BC146972|FAM25C|644054|family with sequence similarity 25, member C##BC146989|FAM25C|644054|family with sequence similarity 25, member C##BC146990|FAM25C|644054|family with sequence similarity 25, member C##BC146991|FAM25C|644054|family with sequence similarity 25, member C##BC147022|FAM25C|644054|family with sequence similarity 25, member C##BC147026|FAM25C|644054|family with sequence similarity 25, member C##BC171871|FAM25C|644054|family with sequence similarity 25, member C##NM_001137548|FAM25C|644054|family with sequence similarity 25, member C##NM_001137549|FAM25G|100133093|family with sequence similarity 25, member G##NM_001137556|FAM25B|100132929|family with sequence similarity 25, member B##BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22##AK055937|ARHGAP22|58504|Rho GTPase activating protein 22	0.0	0.0	
chr13	77915592	77915702	reg1010341.p1	4.201	+	NM_015057 TSC_hg19_v1_chr13_-_77901230	-14444	-	TSC_hg19_v1_chr13_-_77601303 AK314442 NM_012158	-314316	-	TSC_hg19_v1_chr13_-_77601295 AL833187 BC063796 BC072448	-314365	-	NM_001160706 NM_003843 NM_144777 BC020726 AF045941 AK025320 AK222720 AK301659	194204	+	TSC_hg19_v1_chr13_+_78271822 NM_001242868	356257	+	AK294201 NM_001040153	357368	+	NM_015057|MYCBP2|23077|MYC binding protein 2##AK314442|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_012158|FBXL3|26224|F-box and leucine-rich repeat protein 3##AL833187|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC063796|FBXL3|26224|F-box and leucine-rich repeat protein 3##BC072448|FBXL3|26224|F-box and leucine-rich repeat protein 3##NM_001160706|SCEL|8796|sciellin##NM_003843|SCEL|8796|sciellin##NM_144777|SCEL|8796|sciellin##BC020726|SCEL|8796|sciellin##AF045941|SCEL|8796|sciellin##AK025320|SCEL|8796|sciellin##AK222720|SCEL|8796|sciellin##AK301659|SCEL|8796|sciellin##NM_001242868|SLAIN1|122060|SLAIN motif family, member 1##AK294201|SLAIN1|122060|SLAIN motif family, member 1##NM_001040153|SLAIN1|122060|SLAIN motif family, member 1	0.998546	0.0	
chr2	225841360	225841540	reg1013680.p1	4.201	+	TSC_hg19_v1_chr2_-_225811768 EU236710	-29696	-	TSC_hg19_v1_chr2_-_225450116 NM_003590	-391330	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-391375	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	65898	-	NM_020864 BC131727 AB040919	424195	+	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	1822029	-	EU236710|DOCK10|55619|dedicator of cytokinesis 10##NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1	0.997906	0.0	denovo_WM_7:-40:0.298	denovo_WM_7:-41:0.298	denovo_WM_7:-42:0.298
chr9	4798830	4798938	reg1011113.p2	4.201	+	TSC_hg19_v1_chr9_+_4792995 AJ276894 EU831474 EU831561 AF067172	-5841	+	TSC_hg19_v1_chr9_+_4792936 AK022904 BC001025 AK225872	-5961	+	NM_005772 TSC_hg19_v1_chr9_+_4792833	-6051	+	TSC_hg19_v1_chr9_+_4839769 EF553527	40884	+	TSC_hg19_v1_chr9_+_4985085 AK292525	186203	+	TSC_hg19_v1_chr9_+_4985271 AF005216 NM_004972 AF058925	186375	+	AJ276894|RCL1|10171|RNA terminal phosphate cyclase-like 1##EU831474|RCL1|10171|RNA terminal phosphate cyclase-like 1##EU831561|RCL1|10171|RNA terminal phosphate cyclase-like 1##AF067172|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK022904|RCL1|10171|RNA terminal phosphate cyclase-like 1##BC001025|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK225872|RCL1|10171|RNA terminal phosphate cyclase-like 1##NM_005772|RCL1|10171|RNA terminal phosphate cyclase-like 1##EF553527|RCL1|10171|RNA terminal phosphate cyclase-like 1##AK292525|JAK2|3717|Janus kinase 2##AF005216|JAK2|3717|Janus kinase 2##NM_004972|JAK2|3717|Janus kinase 2##AF058925|JAK2|3717|Janus kinase 2	1.688033	0.0	
chr14	74100237	74100350	reg1010910.p1	4.200	+	DQ082756 NM_001037162	-16746	+	BC090945 NM_152331	-41884	+	TSC_hg19_v1_chr14_+_74035979 DQ893488 DQ896406 BC004436 BC006500 L40401 AY005822 CU678722	-64296	+	NM_001201366 NM_031427 AF542071 BC005343 AL833654 AK315392	11360	+	CR457112 BC039577 AK290980 TSC_hg19_v1_chr14_-_74181085 AF320308 BC007712 NM_006029	80468	-	BC015668 TSC_hg19_v1_chr14_-_74226640	126345	-	DQ082756|ACOT6|641372|acyl-CoA thioesterase 6##NM_001037162|ACOT6|641372|acyl-CoA thioesterase 6##BC090945|ACOT4|122970|acyl-CoA thioesterase 4##NM_152331|ACOT4|122970|acyl-CoA thioesterase 4##DQ893488|ACOT2|10965|acyl-CoA thioesterase 2##DQ896406|ACOT2|10965|acyl-CoA thioesterase 2##BC004436|ACOT2|10965|acyl-CoA thioesterase 2##BC006500|ACOT2|10965|acyl-CoA thioesterase 2##L40401|ACOT2|10965|acyl-CoA thioesterase 2##AY005822|ACOT2|10965|acyl-CoA thioesterase 2##NM_001201366|DNAL1|83544|dynein, axonemal, light chain 1##NM_031427|DNAL1|83544|dynein, axonemal, light chain 1##AF542071|DNAL1|83544|dynein, axonemal, light chain 1##BC005343|DNAL1|83544|dynein, axonemal, light chain 1##AL833654|DNAL1|83544|dynein, axonemal, light chain 1##AK315392|DNAL1|83544|dynein, axonemal, light chain 1##CR457112|PNMA1|9240|paraneoplastic antigen MA1##BC039577|PNMA1|9240|paraneoplastic antigen MA1##AK290980|PNMA1|9240|paraneoplastic antigen MA1##AF320308|PNMA1|9240|paraneoplastic antigen MA1##BC007712|PNMA1|9240|paraneoplastic antigen MA1##NM_006029|PNMA1|9240|paraneoplastic antigen MA1##BC015668|C14orf43|91748|chromosome 14 open reading frame 43	0.0	0.947411	CTCF.p2:24:0.947
chr15	56532220	56532360	reg1013051.p2	4.200	+	TSC_hg19_v1_chr15_-_56388663 AL832584	-143593	-	TSC_hg19_v1_chr15_-_56285776 BC035707 AK304394 AY550969 BC152452 BC152562 D42055 NM_006154	-246495	-	BC136605 BC144284 BC144285 AL832063 NM_198400	-322974	-	TSC_hg19_v1_chr15_-_56535479 NM_022841	3192	-	TSC_hg19_v1_chr15_+_56657623 AK294960 BC028119 NM_198524 AL832050	125339	+	TSC_hg19_v1_chr15_-_56757262 BC031046 AK310029 BC012554 BC034991 AK002084 NM_018365	224996	-	AL832584|RFX7|64864|regulatory factor X, 7##BC035707|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AK304394|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AY550969|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC152452|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC152562|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##D42055|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_006154|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC136605|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC144284|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##BC144285|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##AL832063|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_198400|NEDD4|4734|neural precursor cell expressed, developmentally down-regulated 4##NM_022841|RFX7|64864|regulatory factor X, 7##AK294960|TEX9|374618|testis expressed 9##BC028119|TEX9|374618|testis expressed 9##NM_198524|TEX9|374618|testis expressed 9##AL832050|TEX9|374618|testis expressed 9##BC031046|MNS1|55329|meiosis-specific nuclear structural 1##BC012554|MNS1|55329|meiosis-specific nuclear structural 1##BC034991|MNS1|55329|meiosis-specific nuclear structural 1##AK002084|MNS1|55329|meiosis-specific nuclear structural 1##NM_018365|MNS1|55329|meiosis-specific nuclear structural 1	1.991531	0.0	denovo_WM_7:17:0.431	denovo_WM_7:20:0.287	denovo_WM_7:21:0.246
chr20	35672453	35672633	reg1007048.p1	4.200	+	TSC_hg19_v1_chr20_-_35580196 AK027811 NM_015474	-92328	-	AF228421 AK315169 TSC_hg19_v1_chr20_-_35580179	-92366	-	TSC_hg19_v1_chr20_-_35580112 AK304795 AL050267	-92430	-	AB384850 DQ890612 DQ893783 CU689312 TSC_hg19_v1_chr20_-_35724395 AK308096 BC032247 AK290380 L14812	51822	-	TSC_hg19_v1_chr20_-_35724401 AK310870 NM_002895 NM_183404	51864	-	TSC_hg19_v1_chr20_+_35807496 NM_001135771 NM_002951 Y00282	134931	+	AK027811|SAMHD1|25939|SAM domain and HD domain 1##NM_015474|SAMHD1|25939|SAM domain and HD domain 1##AF228421|SAMHD1|25939|SAM domain and HD domain 1##AK315169|SAMHD1|25939|SAM domain and HD domain 1##AK304795|SAMHD1|25939|SAM domain and HD domain 1##AL050267|SAMHD1|25939|SAM domain and HD domain 1##DQ890612|RBL1|5933|retinoblastoma-like 1 (p107)##DQ893783|RBL1|5933|retinoblastoma-like 1 (p107)##AK308096|RBL1|5933|retinoblastoma-like 1 (p107)##BC032247|RBL1|5933|retinoblastoma-like 1 (p107)##AK290380|RBL1|5933|retinoblastoma-like 1 (p107)##L14812|RBL1|5933|retinoblastoma-like 1 (p107)##AK310870|RBL1|5933|retinoblastoma-like 1 (p107)##NM_002895|RBL1|5933|retinoblastoma-like 1 (p107)##NM_183404|RBL1|5933|retinoblastoma-like 1 (p107)##NM_001135771|RPN2|6185|ribophorin II##NM_002951|RPN2|6185|ribophorin II##Y00282|RPN2|6185|ribophorin II	0.997469	0.0	
chr20	62608108	62608213	reg1013074.p1	4.200	+	TSC_hg19_v1_chr20_-_62601275 BC125129 BC125128 NM_020713	-6887	-	TSC_hg19_v1_chr20_-_62587770 BC033078 AJ605558 AK000524 AK223220 AK301602 AK222559 NM_017859	-20385	-	AK303688 NM_001193379	-25658	-	TSC_hg19_v1_chr20_-_62610996 BC067362 NM_080621	2834	-	TSC_hg19_v1_chr20_-_62611342 BC041436	3183	-	TSC_hg19_v1_chr20_+_62612424 NM_012469	4262	+	BC125129|ZNF512B|57473|zinc finger protein 512B##BC125128|ZNF512B|57473|zinc finger protein 512B##NM_020713|ZNF512B|57473|zinc finger protein 512B##BC033078|UCKL1|54963|uridine-cytidine kinase 1-like 1##AJ605558|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK000524|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK223220|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK301602|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK222559|UCKL1|54963|uridine-cytidine kinase 1-like 1##NM_017859|UCKL1|54963|uridine-cytidine kinase 1-like 1##AK303688|UCKL1|54963|uridine-cytidine kinase 1-like 1##NM_001193379|UCKL1|54963|uridine-cytidine kinase 1-like 1##BC067362|SAMD10|140700|sterile alpha motif domain containing 10##NM_080621|SAMD10|140700|sterile alpha motif domain containing 10##BC041436|SAMD10|140700|sterile alpha motif domain containing 10##NM_012469|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)	1.982435	0.0	denovo_WM_7:-17:0.820	denovo_WM_7:-32:0.274	denovo_WM_7:-33:0.331	denovo_WM_7:-34:0.387
chr5	124549974	124550129	reg1008278.p1	4.200	+	BC131507 AB033107 BC151226 NM_020747	-469263	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1702169	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1790907	-	NM_001146319 AK316288 AK300154	1145763	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1208792	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1209136	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr6	33516072	33516182	reg1010110.p1	4.200	+	TSC_hg19_v1_chr6_+_33422352 AK313571 AK122644 NM_152735 BC014978	-93755	+	AK094225 NM_006772 AB067525 AK307888 AB385518	-128184	+	NM_001014433 NM_001014837 NM_001014838 NM_001014840 NM_015921 TSC_hg19_v1_chr6_-_33386080	-130047	-	U23765 U16811 TSC_hg19_v1_chr6_-_33547998 X84213 BC004431 BC032789 BC110337 AK091807 AK292093	31788	-	TSC_hg19_v1_chr6_-_33548037 AK303422 AK293547 NM_001188	31916	-	TSC_hg19_v1_chr6_+_33589123 D26351 NM_002224 BC146646 U01062	73067	+	AK313571|ZBTB9|221504|zinc finger and BTB domain containing 9##AK122644|ZBTB9|221504|zinc finger and BTB domain containing 9##NM_152735|ZBTB9|221504|zinc finger and BTB domain containing 9##BC014978|ZBTB9|221504|zinc finger and BTB domain containing 9##AK094225|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##NM_006772|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##AK307888|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##NM_001014433|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014837|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014838|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014840|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_015921|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##U23765|BAK1|578|BCL2-antagonist/killer 1##U16811|BAK1|578|BCL2-antagonist/killer 1##X84213|BAK1|578|BCL2-antagonist/killer 1##BC004431|BAK1|578|BCL2-antagonist/killer 1##BC032789|BAK1|578|BCL2-antagonist/killer 1##BC110337|BAK1|578|BCL2-antagonist/killer 1##AK091807|BAK1|578|BCL2-antagonist/killer 1##AK292093|BAK1|578|BCL2-antagonist/killer 1##AK303422|BAK1|578|BCL2-antagonist/killer 1##AK293547|BAK1|578|BCL2-antagonist/killer 1##NM_001188|BAK1|578|BCL2-antagonist/killer 1##D26351|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##NM_002224|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##BC146646|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##U01062|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3	0.996942	0.0	denovo_WM_7:-24:0.841
chr6	43243976	43244074	reg1014298.p1	4.200	+	NM_032538 TSC_hg19_v1_chr6_+_43211227	-32797	+	TSC_hg19_v1_chr6_-_43197220 BC011683 AF040105 NM_006443 NM_199184 EU585603	-46826	-	TSC_hg19_v1_chr6_+_43149926 BC028159	-94088	+	TSC_hg19_v1_chr6_+_43265994 NM_006672 NM_153320 AF097518	21972	+	TSC_hg19_v1_chr6_+_43266009 AK290806 AK309570 AK314822 BC033805 AK290796 BC017963 DQ893614 DQ896844 AF210455 AY050498	22027	+	AB463553 AY555741 AY555742 AY555743 AY555744 NM_206922	32504	-	NM_032538|TTBK1|84630|tau tubulin kinase 1##BC011683|C6orf108|10591|chromosome 6 open reading frame 108##AF040105|C6orf108|10591|chromosome 6 open reading frame 108##NM_006443|C6orf108|10591|chromosome 6 open reading frame 108##NM_199184|C6orf108|10591|chromosome 6 open reading frame 108##EU585603|C6orf108|10591|chromosome 6 open reading frame 108##BC028159|CUL9|23113|cullin 9##NM_006672|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##NM_153320|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF097518|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK290806|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK309570|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK314822|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC033805|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AK290796|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##BC017963|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ893614|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##DQ896844|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AF210455|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AY050498|SLC22A7|10864|solute carrier family 22 (organic anion transporter), member 7##AY555741|CRIP3|401262|cysteine-rich protein 3##AY555742|CRIP3|401262|cysteine-rich protein 3##AY555743|CRIP3|401262|cysteine-rich protein 3##AY555744|CRIP3|401262|cysteine-rich protein 3##NM_206922|CRIP3|401262|cysteine-rich protein 3	0.0	0.0	
chr7	70273946	70274118	reg1011282.p1	4.200	+	TSC_hg19_v1_chr7_+_70231164 AK296981	-42827	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-1209444	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1209703	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	323756	+	AK123862 TSC_hg19_v1_chr7_-_71801809	1527746	-	NM_001017440 TSC_hg19_v1_chr7_-_71802376	1528272	-	AK296981|AUTS2|26053|autism susceptibility candidate 2##BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1##NM_001017440|CALN1|83698|calneuron 1	0.0	0.0	
chrX	23879771	23879934	reg1010381.p2	4.200	+	TSC_hg19_v1_chrX_-_23855464 AK303908 D28399	-24392	-	TSC_hg19_v1_chrX_+_23801432 M55580 AY841998 AB464243 AM392717 BT006825 CR450294	-78403	+	NM_002970 TSC_hg19_v1_chrX_+_23801289 AK310078 BC008424 AK312162 AK310094 M77693 AL050290 BC002503 AK315888	-78540	+	TSC_hg19_v1_chrX_-_23926052 AY359114 AK311865 AF061264 BC016814 BC002333 BC010102 NM_024122	46158	-	AK058173 NM_001169574 NM_152761 BC117344 BC117346 BC144007	46314	+	AK057298 NM_030624	165450	-	AK303908|RPL9|6133|ribosomal protein L9##M55580|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AY841998|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BT006825|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##CR450294|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##NM_002970|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK310078|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC008424|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK312162|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##M77693|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AL050290|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##BC002503|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AK315888|SAT1|6303|spermidine/spermine N1-acetyltransferase 1##AY359114|APOO|79135|apolipoprotein O##AK311865|APOO|79135|apolipoprotein O##AF061264|APOO|79135|apolipoprotein O##BC016814|APOO|79135|apolipoprotein O##BC002333|APOO|79135|apolipoprotein O##BC010102|APOO|79135|apolipoprotein O##NM_024122|APOO|79135|apolipoprotein O##AK058173|CXorf58|254158|chromosome X open reading frame 58##NM_001169574|CXorf58|254158|chromosome X open reading frame 58##NM_152761|CXorf58|254158|chromosome X open reading frame 58##BC117344|CXorf58|254158|chromosome X open reading frame 58##BC117346|CXorf58|254158|chromosome X open reading frame 58##BC144007|CXorf58|254158|chromosome X open reading frame 58##AK057298|KLHL15|80311|kelch-like 15 (Drosophila)##NM_030624|KLHL15|80311|kelch-like 15 (Drosophila)	0.986544	0.0	
chr1	171609104	171609280	reg1016003.p2	4.199	+	AF253978 AL096857 TSC_hg19_v1_chr1_+_171481269 AF488829	-127940	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	-154498	+	BC002780 NM_002022 Z11737	-325764	+	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	12608	-	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	102043	-	AK092254 TSC_hg19_v1_chr1_+_171711293	102095	+	AF253978|PRRC2C|23215|proline-rich coiled-coil 2C##AL096857|PRRC2C|23215|proline-rich coiled-coil 2C##AF488829|PRRC2C|23215|proline-rich coiled-coil 2C##BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4	2.979648	0.0	denovo_WM_7:37:0.427	denovo_WM_7:38:0.479	denovo_WM_7:-85:0.732	denovo_WM_7:-100:0.896
chr13	42520234	42520357	reg1015614.p1	4.199	+	TSC_hg19_v1_chr13_+_42031690 BC038706 AF036549	-488595	+	TSC_hg19_v1_chr13_+_42031685 BC066334	-488612	+	TSC_hg19_v1_chr13_+_42031539 NM_014059	-488744	+	TSC_hg19_v1_chr13_-_42535066 AK095155	14785	-	TSC_hg19_v1_chr13_-_42535247 AB590583 BC131802 BC053674 NM_001009814 NM_015058	14894	-	AK289546 NM_001204504	93876	+	BC038706|C13orf15|28984|chromosome 13 open reading frame 15##AF036549|C13orf15|28984|chromosome 13 open reading frame 15##BC066334|C13orf15|28984|chromosome 13 open reading frame 15##NM_014059|C13orf15|28984|chromosome 13 open reading frame 15##AK095155|KIAA0564|23078|KIAA0564##BC131802|KIAA0564|23078|KIAA0564##BC053674|KIAA0564|23078|KIAA0564##NM_001009814|KIAA0564|23078|KIAA0564##NM_015058|KIAA0564|23078|KIAA0564##AK289546|DGKH|160851|diacylglycerol kinase, eta##NM_001204504|DGKH|160851|diacylglycerol kinase, eta	0.990931	0.0	denovo_WM_7:59:0.302	denovo_WM_7:60:0.620
chr15	66717649	66717793	reg1011211.p1	4.199	+	TSC_hg19_v1_chr15_+_66694219 AK294322	-23504	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	-38448	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	-38559	+	AF093593 AB464224 AK292051 TSC_hg19_v1_chr15_-_66790104 BC014315 AK024763 AK312018 NM_006049	72385	-	L20868 BC005817 BC009888 BC014653 BC010151 BC007996 BC040610 AB208977 BC001365 BC018840 BC095427 TSC_hg19_v1_chr15_-_66797186 AK297490 AK291117 AK297484 AK130784 AK223057 AK291859 AK294113 AK298224 BC066925 D23660 NM_000968	79451	-	AK023175 NM_017975 BX640701	79721	+	AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AF093593|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK292051|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##BC014315|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK024763|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK312018|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##NM_006049|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##L20868|RPL4|6124|ribosomal protein L4##BC005817|RPL4|6124|ribosomal protein L4##BC009888|RPL4|6124|ribosomal protein L4##BC014653|RPL4|6124|ribosomal protein L4##BC010151|RPL4|6124|ribosomal protein L4##BC007996|RPL4|6124|ribosomal protein L4##BC040610|RPL4|6124|ribosomal protein L4##AB208977|RPL4|6124|ribosomal protein L4##BC001365|RPL4|6124|ribosomal protein L4##BC018840|RPL4|6124|ribosomal protein L4##BC095427|RPL4|6124|ribosomal protein L4##AK291117|RPL4|6124|ribosomal protein L4##AK297484|RPL4|6124|ribosomal protein L4##AK130784|RPL4|6124|ribosomal protein L4##AK223057|RPL4|6124|ribosomal protein L4##AK291859|RPL4|6124|ribosomal protein L4##AK294113|RPL4|6124|ribosomal protein L4##BC066925|RPL4|6124|ribosomal protein L4##D23660|RPL4|6124|ribosomal protein L4##NM_000968|RPL4|6124|ribosomal protein L4##AK023175|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##NM_017975|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##BX640701|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)	0.0	0.0	
chr17	33288149	33288318	reg1001009.p1	4.199	+	NM_207313	-380466	+	BC133004 BC136710 BC142651 AK126768 NM_207454	-381881	-	AB528767 BC105073 BC105075 M57502 AK312183 NM_002981	-598018	-	CU693272 AK301773 TSC_hg19_v1_chr17_-_33288425 AK225729 BC026125 AK225728 D78333	202	-	TSC_hg19_v1_chr17_-_33288480 AK302344 BC027591 NM_001193529 NM_001193530 NM_006584	269	-	TSC_hg19_v1_chr17_+_33288558 AK315671 NM_052857 AK055707 AB590460 BC002913 BC011584 DQ892326 DQ895528	356	+	NM_207313|TMEM132E|124842|transmembrane protein 132E##BC133004|C17orf102|400591|chromosome 17 open reading frame 102##BC136710|C17orf102|400591|chromosome 17 open reading frame 102##BC142651|C17orf102|400591|chromosome 17 open reading frame 102##AK126768|C17orf102|400591|chromosome 17 open reading frame 102##NM_207454|C17orf102|400591|chromosome 17 open reading frame 102##BC105073|CCL1|6346|chemokine (C-C motif) ligand 1##BC105075|CCL1|6346|chemokine (C-C motif) ligand 1##M57502|CCL1|6346|chemokine (C-C motif) ligand 1##AK312183|CCL1|6346|chemokine (C-C motif) ligand 1##NM_002981|CCL1|6346|chemokine (C-C motif) ligand 1##AK301773|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225729|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC026125|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK225728|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##D78333|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK302344|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##BC027591|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193529|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_001193530|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##NM_006584|CCT6B|10693|chaperonin containing TCP1, subunit 6B (zeta 2)##AK315671|ZNF830|91603|zinc finger protein 830##NM_052857|ZNF830|91603|zinc finger protein 830##AK055707|ZNF830|91603|zinc finger protein 830##BC002913|ZNF830|91603|zinc finger protein 830##BC011584|ZNF830|91603|zinc finger protein 830##DQ892326|ZNF830|91603|zinc finger protein 830##DQ895528|ZNF830|91603|zinc finger protein 830	0.0	0.0	
chr18	57539842	57539918	reg1014357.p1	4.199	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-175230	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-175289	-	TSC_hg19_v1_chr18_-_57026487 DQ891254 DQ894440 U09716 AK223208 AK225108 AK312869 BC008401 BC032330 BC017858 X71661 AK301244 NM_005570	-513394	-	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	27349	+	AK314130 NM_005912	500120	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1617894	+	NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##DQ891254|LMAN1|3998|lectin, mannose-binding, 1##DQ894440|LMAN1|3998|lectin, mannose-binding, 1##U09716|LMAN1|3998|lectin, mannose-binding, 1##AK223208|LMAN1|3998|lectin, mannose-binding, 1##AK225108|LMAN1|3998|lectin, mannose-binding, 1##AK312869|LMAN1|3998|lectin, mannose-binding, 1##BC008401|LMAN1|3998|lectin, mannose-binding, 1##BC032330|LMAN1|3998|lectin, mannose-binding, 1##BC017858|LMAN1|3998|lectin, mannose-binding, 1##X71661|LMAN1|3998|lectin, mannose-binding, 1##AK301244|LMAN1|3998|lectin, mannose-binding, 1##NM_005570|LMAN1|3998|lectin, mannose-binding, 1##NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2	0.0	0.0	
chr3	189373528	189373702	reg1013985.p1	4.199	+	BC039815 NM_001114978 NM_001114979 NM_003722 AB016072 AB016073 AF116771 Y16961 CU691766 EU446669	-24356	+	AK125682 NM_198485 BC101550 BC101552	-483804	+	TSC_hg19_v1_chr3_+_188664993 AK123232	-708645	+	AK304127 NM_001114980 NM_001114981 NM_001114982 GQ202689 GQ202690 AF091627 AB010153 AB042841 AF075429 AF075431 AF075433	133903	+	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	465080	-	NM_018192	465292	-	BC039815|TP63|8626|tumor protein p63##NM_001114978|TP63|8626|tumor protein p63##NM_001114979|TP63|8626|tumor protein p63##NM_003722|TP63|8626|tumor protein p63##AB016072|TP63|8626|tumor protein p63##AB016073|TP63|8626|tumor protein p63##AF116771|TP63|8626|tumor protein p63##Y16961|TP63|8626|tumor protein p63##EU446669|TP63|8626|tumor protein p63##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1##AK123232|TPRG1|285386|tumor protein p63 regulated 1##AK304127|TP63|8626|tumor protein p63##NM_001114980|TP63|8626|tumor protein p63##NM_001114981|TP63|8626|tumor protein p63##NM_001114982|TP63|8626|tumor protein p63##GQ202689|TP63|8626|tumor protein p63##GQ202690|TP63|8626|tumor protein p63##AF091627|TP63|8626|tumor protein p63##AB010153|TP63|8626|tumor protein p63##AB042841|TP63|8626|tumor protein p63##AF075429|TP63|8626|tumor protein p63##AF075431|TP63|8626|tumor protein p63##AF075433|TP63|8626|tumor protein p63##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1	0.0	0.0	
chr4	8194587	8194738	reg1015121.p2	4.199	+	DQ413176 AJ748600 AJ748601 TSC_hg19_v1_chr4_-_8160541 BC122567 AK130044 AK094754 BC067214 NM_001130083 NM_001130084 NM_001130085 NM_001130086 NM_001130087 NM_001130088 NM_032432	-34128	-	TSC_hg19_v1_chr4_-_8129388 AK301060	-65277	-	TSC_hg19_v1_chr4_-_8073714 AK094798	-120946	-	TSC_hg19_v1_chr4_+_8201038 BC030283 AK074093 NM_018986 BC068094 AK074402 AK126165 BC131785	6370	+	TSC_hg19_v1_chr4_+_8271480 NM_053044 AY040094 BC034390 BC035717 AY280665 AY280666 AB528940 DQ891188 DQ894371	76913	+	TSC_hg19_v1_chr4_-_8430196 AK313242	235539	-	DQ413176|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748600|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748601|ABLIM2|84448|actin binding LIM protein family, member 2##BC122567|ABLIM2|84448|actin binding LIM protein family, member 2##AK130044|ABLIM2|84448|actin binding LIM protein family, member 2##AK094754|ABLIM2|84448|actin binding LIM protein family, member 2##BC067214|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130083|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130084|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130085|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130086|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130087|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130088|ABLIM2|84448|actin binding LIM protein family, member 2##NM_032432|ABLIM2|84448|actin binding LIM protein family, member 2##AK301060|ABLIM2|84448|actin binding LIM protein family, member 2##AK094798|ABLIM2|84448|actin binding LIM protein family, member 2##BC030283|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074093|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##NM_018986|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC068094|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074402|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK126165|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC131785|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##NM_053044|HTRA3|94031|HtrA serine peptidase 3##AY040094|HTRA3|94031|HtrA serine peptidase 3##BC034390|HTRA3|94031|HtrA serine peptidase 3##BC035717|HTRA3|94031|HtrA serine peptidase 3##AY280665|HTRA3|94031|HtrA serine peptidase 3##AY280666|HTRA3|94031|HtrA serine peptidase 3##DQ891188|HTRA3|94031|HtrA serine peptidase 3##DQ894371|HTRA3|94031|HtrA serine peptidase 3##AK313242|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl	0.0	0.658052	CTCF.p2:-85:0.658
chr6	20564594	20564730	reg1013593.p1	4.199	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-29939	+	CR749285 NM_001243076	-160629	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-162559	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	1029710	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	1101997	+	BC015850 NM_000948	1733067	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.0	0.332645	CTCF.p2:-52:0.333
chr9	117977098	117977192	reg1019603.p2	4.199	+	AB022761 NM_017418	-73049	+	AB210038 TSC_hg19_v1_chr9_-_117880433 AK304015 X78565 NM_002160	-96672	-	AK313619 NM_001244 NM_001252290	-284271	-	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	938925	+	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	1472317	-	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	1472461	+	AB022761|DEC1|50514|deleted in esophageal cancer 1##NM_017418|DEC1|50514|deleted in esophageal cancer 1##AB210038|TNC|3371|tenascin C##AK304015|TNC|3371|tenascin C##X78565|TNC|3371|tenascin C##NM_002160|TNC|3371|tenascin C##AK313619|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_001244|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_001252290|TNFSF8|944|tumor necrosis factor (ligand) superfamily, member 8##NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32	0.0	0.0	
chr18	72706959	72707091	reg1013343.p1	4.198	+	NM_001146189 NM_001146190 NM_017757	-364107	+	TSC_hg19_v1_chr18_+_72265126 AK056288	-441894	+	TSC_hg19_v1_chr18_-_72265072 BC036588	-441965	-	TSC_hg19_v1_chr18_-_72920993 CU687330 CU689738	213976	-	TSC_hg19_v1_chr18_-_72921059 AK292880 BC078661 BC033780	214087	-	BC018081 NM_175907 TSC_hg19_v1_chr18_-_72921324	214280	-	NM_001146189|ZNF407|55628|zinc finger protein 407##NM_001146190|ZNF407|55628|zinc finger protein 407##NM_017757|ZNF407|55628|zinc finger protein 407##AK056288|ZNF407|55628|zinc finger protein 407##BC036588|LOC400657|400657|uncharacterized LOC400657##AK292880|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC078661|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC033780|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##BC018081|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2##NM_175907|ZADH2|284273|zinc binding alcohol dehydrogenase domain containing 2	0.0	0.0	
chr1	200323587	200323742	reg1015825.p2	4.197	+	NM_001105517	-141009	+	AK316513 TSC_hg19_v1_chr1_+_200011716	-311940	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	-326795	+	AK021707 TSC_hg19_v1_chr1_-_200377270	53605	-	TSC_hg19_v1_chr1_-_200377488 AK022921	53874	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	55245	-	NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK021707|ZNF281|23528|zinc finger protein 281##AK022921|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281	0.131179	0.0	
chr1	88526062	88526181	reg1011398.p2	4.197	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-728706	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-728796	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-731440	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	623974	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	831090	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	831152	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	0.083609	0.0	
chr2	13334236	13334379	reg1013128.p2	4.197	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-475910	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-476391	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-477054	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1438514	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1438544	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2367122	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	0.947499	0.991913	denovo_WM_7:18:0.924	CTCF.p2:-61:0.992
chr3	183418684	183418758	reg1011437.p2	4.197	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	-3099	+	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	-65321	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	-145269	-	TSC_hg19_v1_chr3_-_183543366 BC006434 AK022810 NM_024871	124648	-	AF197937 CU678558 DQ893442 DQ896749 TSC_hg19_v1_chr3_-_183602641	183918	-	TSC_hg19_v1_chr3_-_183602648 BC014058	183930	-	AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##BC006434|MAP6D1|79929|MAP6 domain containing 1##AK022810|MAP6D1|79929|MAP6 domain containing 1##NM_024871|MAP6D1|79929|MAP6 domain containing 1##AF197937|PARL|55486|presenilin associated, rhomboid-like##DQ893442|PARL|55486|presenilin associated, rhomboid-like##DQ896749|PARL|55486|presenilin associated, rhomboid-like##BC014058|PARL|55486|presenilin associated, rhomboid-like	0.0	0.0	
chr9	5845054	5845220	reg1015494.p2	4.197	+	TSC_hg19_v1_chr9_-_5833082 NM_024896	-12059	-	TSC_hg19_v1_chr9_-_5833067 AK127218	-12070	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	-12186	-	U06654 BC014423 AK312149 NM_005511 U06452	45717	+	BC108654 TSC_hg19_v1_chr9_-_5968443	123271	-	TSC_hg19_v1_chr9_-_6007953 NM_001017969	162827	-	NM_024896|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AK127218|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##U06654|MLANA|2315|melan-A##BC014423|MLANA|2315|melan-A##AK312149|MLANA|2315|melan-A##NM_005511|MLANA|2315|melan-A##U06452|MLANA|2315|melan-A##NM_001017969|KIAA2026|158358|KIAA2026	1.061656	0.0	denovo_WM_7:14:0.851
chr9	70651137	70651317	reg1003915.p6	4.197	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-161051	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-161077	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-161087	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	205665	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	266597	+	BC033073 NM_021965	320587	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.997039	0.0	denovo_WM_7:17:0.775
chr10	13141719	13141849	reg1005998.p2	4.196	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	-98085	-	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-750007	+	TSC_hg19_v1_chr10_+_12391709 BC035745	-750067	+	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	361	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	61784	+	BC018068 NM_145314	134543	-	AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10##BC018068|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_145314|UCMA|221044|upper zone of growth plate and cartilage matrix associated	0.0	0.0	
chr10	43616380	43616560	reg1015755.p2	4.196	+	TSC_hg19_v1_chr10_+_43572516 NM_020630 NM_020975 BC003072 BC004257 X15262 AK291807 AB384817 CU678360 CU678648 Y12528	-43867	+	TSC_hg19_v1_chr10_+_43278248 AK308420 BC043345	-338220	+	NM_014753	-338517	+	TSC_hg19_v1_chr10_+_43633892 AB090811 BC030268 NM_018590 BX640967 AB079252 AK125300 AF086458	17472	+	BC022548 NM_145313	145896	-	BC054876 AY358584 NM_001184963 NM_173160	250620	+	NM_020630|RET|5979|ret proto-oncogene##NM_020975|RET|5979|ret proto-oncogene##BC003072|RET|5979|ret proto-oncogene##BC004257|RET|5979|ret proto-oncogene##X15262|RET|5979|ret proto-oncogene##AK291807|RET|5979|ret proto-oncogene##Y12528|RET|5979|ret proto-oncogene##AK308420|BMS1|9790|BMS1 homolog, ribosome assembly protein (yeast)##BC043345|BMS1|9790|BMS1 homolog, ribosome assembly protein (yeast)##NM_014753|BMS1|9790|BMS1 homolog, ribosome assembly protein (yeast)##AB090811|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##BC030268|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##NM_018590|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##BX640967|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##AB079252|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##AK125300|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##AF086458|CSGALNACT2|55454|chondroitin sulfate N-acetylgalactosaminyltransferase 2##BC022548|RASGEF1A|221002|RasGEF domain family, member 1A##NM_145313|RASGEF1A|221002|RasGEF domain family, member 1A##BC054876|FXYD4|53828|FXYD domain containing ion transport regulator 4##AY358584|FXYD4|53828|FXYD domain containing ion transport regulator 4##NM_001184963|FXYD4|53828|FXYD domain containing ion transport regulator 4##NM_173160|FXYD4|53828|FXYD domain containing ion transport regulator 4	0.985864	0.0	denovo_WM_7:-73:0.532	denovo_WM_7:-75:0.260
chr11	118690082	118690216	reg1010610.p1	4.196	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-28215	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-28270	-	TSC_hg19_v1_chr11_-_118661860 BC026228	-28290	-	AK291512 NM_001716 BC110352 X68149 AB464488	64411	+	NM_032966 X68829	73951	+	AB094091 NM_182557	91463	-	NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC026228|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like	0.990723	0.0	denovo_WM_7:-18:0.237	denovo_WM_7:-19:0.237	denovo_WM_7:-20:0.237	denovo_WM_7:-21:0.237
chr12	132408796	132408899	reg1010109.p2	4.196	+	TSC_hg19_v1_chr12_+_132379266 AF045458 NM_003565	-29574	+	TSC_hg19_v1_chr12_+_132312945 BC045610 AB021225 NM_016155 BC040507	-95881	+	TSC_hg19_v1_chr12_+_132195639 BC024041 AK295149 AK310836 BC008707 BC015953 NM_004592 AB208921 U08377 BC113420 BC136678 BC144364	-213191	+	TSC_hg19_v1_chr12_+_132413775 NM_001002020 AK292242	4912	+	TSC_hg19_v1_chr12_+_132413820 NM_001002019 AK074659 NM_025215 BC035964 AF318369 BC002901	4958	+	BC009505 BC019320 TSC_hg19_v1_chr12_+_132414144	5245	+	AF045458|ULK1|8408|unc-51-like kinase 1 (C. elegans)##NM_003565|ULK1|8408|unc-51-like kinase 1 (C. elegans)##BC045610|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##AB021225|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##NM_016155|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC040507|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC024041|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC008707|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC015953|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_004592|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AB208921|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##U08377|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC113420|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC136678|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC144364|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_001002020|PUS1|80324|pseudouridylate synthase 1##AK292242|PUS1|80324|pseudouridylate synthase 1##NM_001002019|PUS1|80324|pseudouridylate synthase 1##AK074659|PUS1|80324|pseudouridylate synthase 1##NM_025215|PUS1|80324|pseudouridylate synthase 1##BC035964|PUS1|80324|pseudouridylate synthase 1##AF318369|PUS1|80324|pseudouridylate synthase 1##BC002901|PUS1|80324|pseudouridylate synthase 1##BC009505|PUS1|80324|pseudouridylate synthase 1##BC019320|PUS1|80324|pseudouridylate synthase 1	0.999899	0.0	
chr12	88579324	88579434	reg1014596.p1	4.196	+	TSC_hg19_v1_chr12_+_88536083 AK290436 AK302755 AK310375 AK310393 NM_181783 CR749309 BX538169 CR749244 CR933632 AJ697717 BC117177 BC117175	-43231	+	BC043398 TSC_hg19_v1_chr12_-_88535871 AK023677 DQ109808 NM_025114	-43510	-	TSC_hg19_v1_chr12_+_88429312 AK095477 NM_001009894 CR936776 AK311222 BC058014 BX640968 BX537868 BX648026 AK311153 BC035136 BC092422 AB590923 AM392924 AL137488	-149993	+	BC074725 AK293002 AF119835 AF400437 BC126166 BC143899 BC069797 BC069733 BC069783 TSC_hg19_v1_chr12_-_88974249 AF400436 M59964 AK290319 NM_000899 NM_003994	394793	-	TSC_hg19_v1_chr12_+_89744716 AK124265	1165373	+	TSC_hg19_v1_chr12_-_89745782 AB451265 AB451393 BT006895 CU678402 AB463588 DQ892490 DQ895701	1166406	-	AK290436|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK302755|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310375|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AK310393|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##NM_181783|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749309|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BX538169|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR749244|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##CR933632|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##AJ697717|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117177|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC117175|TMTC3|160418|transmembrane and tetratricopeptide repeat containing 3##BC043398|CEP290|80184|centrosomal protein 290kDa##AK023677|CEP290|80184|centrosomal protein 290kDa##DQ109808|CEP290|80184|centrosomal protein 290kDa##NM_025114|CEP290|80184|centrosomal protein 290kDa##AK095477|C12orf29|91298|chromosome 12 open reading frame 29##NM_001009894|C12orf29|91298|chromosome 12 open reading frame 29##CR936776|C12orf29|91298|chromosome 12 open reading frame 29##AK311222|C12orf29|91298|chromosome 12 open reading frame 29##BC058014|C12orf29|91298|chromosome 12 open reading frame 29##BX640968|C12orf29|91298|chromosome 12 open reading frame 29##BX537868|C12orf29|91298|chromosome 12 open reading frame 29##BX648026|C12orf29|91298|chromosome 12 open reading frame 29##AK311153|C12orf29|91298|chromosome 12 open reading frame 29##BC035136|C12orf29|91298|chromosome 12 open reading frame 29##BC092422|C12orf29|91298|chromosome 12 open reading frame 29##AM392924|C12orf29|91298|chromosome 12 open reading frame 29##AL137488|C12orf29|91298|chromosome 12 open reading frame 29##BC074725|KITLG|4254|KIT ligand##AK293002|KITLG|4254|KIT ligand##AF119835|KITLG|4254|KIT ligand##AF400437|KITLG|4254|KIT ligand##BC126166|KITLG|4254|KIT ligand##BC143899|KITLG|4254|KIT ligand##BC069797|KITLG|4254|KIT ligand##BC069733|KITLG|4254|KIT ligand##BC069783|KITLG|4254|KIT ligand##AF400436|KITLG|4254|KIT ligand##M59964|KITLG|4254|KIT ligand##AK290319|KITLG|4254|KIT ligand##NM_000899|KITLG|4254|KIT ligand##NM_003994|KITLG|4254|KIT ligand##AK124265|LOC100131490|100131490|uncharacterized LOC100131490##AB451265|DUSP6|1848|dual specificity phosphatase 6##AB451393|DUSP6|1848|dual specificity phosphatase 6##BT006895|DUSP6|1848|dual specificity phosphatase 6##DQ892490|DUSP6|1848|dual specificity phosphatase 6##DQ895701|DUSP6|1848|dual specificity phosphatase 6	0.0	0.0	
chr3	115232365	115232463	reg1013906.p2	4.196	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-366300	-	BC090936 NM_001164343	-442174	-	AK225788 NM_001164344 NM_001164345	-754294	-	NM_001130064 NM_002045	109736	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	110005	+	AK315286 TSC_hg19_v1_chr3_-_116164338	931917	-	BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AK315286|LSAMP|4045|limbic system-associated membrane protein	0.722322	0.0	denovo_WM_7:8:0.526
chr14	65898356	65898431	reg1015238.p2	4.195	+	TSC_hg19_v1_chr14_+_65879739 BC025385	-18668	+	TSC_hg19_v1_chr14_+_65879525 Y17978 Y17979	-18905	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	-19067	-	AB037806 AF272663 NM_001024218 NM_020806	1075731	+	TSC_hg19_v1_chr14_+_66974859 AK025169	1076460	+	TSC_hg19_v1_chr14_+_66974870 AK315569	1076476	+	BC025385|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17978|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17979|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431##AB037806|GPHN|10243|gephyrin##AF272663|GPHN|10243|gephyrin##NM_001024218|GPHN|10243|gephyrin##NM_020806|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin	0.999143	0.0	denovo_WM_7:-6:0.739
chr19	10763500	10763593	reg1010136.p2	4.195	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	-27327	+	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	-50413	+	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	-65598	-	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	965	-	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	1394	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	1500	+	FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa	0.503071	0.0	denovo_WM_7:5:0.238	denovo_WM_7:6:0.210
chr9	74517295	74517408	reg1010954.p1	4.195	+	BC140773 BC144510 BC171782 AB037833 BC146780 TSC_hg19_v1_chr9_-_74383430 AF137030 AK300405 AK056807 NM_001135820 NM_013390	-133773	-	AL136545 TSC_hg19_v1_chr9_-_74061901	-455468	-	AJ505025 AJ505026 NM_001007471 TSC_hg19_v1_chr9_-_73736559	-780815	-	AF151825 TSC_hg19_v1_chr9_-_74525994	8574	-	TSC_hg19_v1_chr9_-_74526110 BC044576 NM_001025780 NM_016014 AK293060	8805	-	TSC_hg19_v1_chr9_+_74526393 NM_182505 BC010179	9050	+	BC140773|TMEM2|23670|transmembrane protein 2##BC144510|TMEM2|23670|transmembrane protein 2##BC171782|TMEM2|23670|transmembrane protein 2##AB037833|TMEM2|23670|transmembrane protein 2##BC146780|TMEM2|23670|transmembrane protein 2##AF137030|TMEM2|23670|transmembrane protein 2##AK300405|TMEM2|23670|transmembrane protein 2##NM_001135820|TMEM2|23670|transmembrane protein 2##NM_013390|TMEM2|23670|transmembrane protein 2##AL136545|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505025|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AJ505026|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##NM_001007471|TRPM3|80036|transient receptor potential cation channel, subfamily M, member 3##AF151825|FAM108B1|51104|family with sequence similarity 108, member B1##BC044576|FAM108B1|51104|family with sequence similarity 108, member B1##NM_001025780|FAM108B1|51104|family with sequence similarity 108, member B1##NM_016014|FAM108B1|51104|family with sequence similarity 108, member B1##AK293060|FAM108B1|51104|family with sequence similarity 108, member B1##NM_182505|C9orf85|138241|chromosome 9 open reading frame 85##BC010179|C9orf85|138241|chromosome 9 open reading frame 85	0.987218	0.0	denovo_WM_7:13:0.551	denovo_WM_7:14:0.436
chrX	19761535	19761668	reg1014184.p1	4.195	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-72545	-	NM_001001671	-228223	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-399519	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	56274	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	56311	-	TSC_hg19_v1_chrX_-_19905450 AY542305	143862	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.847216	0.0	denovo_WM_7:-21:0.577	denovo_WM_7:-23:0.277	denovo_WM_7:-46:0.522
chr11	125384426	125384545	reg1014267.p2	4.194	+	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	-18344	-	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	-349859	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	-349907	+	TSC_hg19_v1_chr11_+_125439294 NM_001007277 NM_004879	54810	+	TSC_hg19_v1_chr11_+_125439332 AB209820	54840	+	TSC_hg19_v1_chr11_+_125439353 AK223029 AK296620 AK301556	54870	+	U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_001007277|EI24|9538|etoposide induced 2.4 mRNA##NM_004879|EI24|9538|etoposide induced 2.4 mRNA##AB209820|EI24|9538|etoposide induced 2.4 mRNA##AK223029|EI24|9538|etoposide induced 2.4 mRNA##AK296620|EI24|9538|etoposide induced 2.4 mRNA##AK301556|EI24|9538|etoposide induced 2.4 mRNA	0.0	0.0	
chr11	20000245	20000386	reg1010357.p2	4.194	+	TSC_hg19_v1_chr11_+_19734821 AB037840 BC150290 NM_001244963 NM_145117 NM_182964 AB063116	-265449	+	AB063115 NM_001111018 AJ488205	-628000	+	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	-737114	-	TSC_hg19_v1_chr11_+_20044396 AK298346 AJ488208	44073	+	TSC_hg19_v1_chr11_+_20049136 AK307574	48817	+	AK290458 TSC_hg19_v1_chr11_+_20070637	70308	+	AB037840|NAV2|89797|neuron navigator 2##BC150290|NAV2|89797|neuron navigator 2##NM_001244963|NAV2|89797|neuron navigator 2##NM_145117|NAV2|89797|neuron navigator 2##NM_182964|NAV2|89797|neuron navigator 2##AB063116|NAV2|89797|neuron navigator 2##AB063115|NAV2|89797|neuron navigator 2##NM_001111018|NAV2|89797|neuron navigator 2##AJ488205|NAV2|89797|neuron navigator 2##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8##AK298346|NAV2|89797|neuron navigator 2##AJ488208|NAV2|89797|neuron navigator 2##AK307574|NAV2|89797|neuron navigator 2##AK290458|NAV2|89797|neuron navigator 2	0.509245	0.0	
chr1	30196386	30196566	reg1015936.p2	4.194	+	TSC_hg19_v1_chr1_+_29563016 NM_001195001 NM_005704 NM_133177 NM_133178 X97198 U73727 BC146655 X95712 U71075	-633428	+	TSC_hg19_v1_chr1_-_29557437 AK300889 AK025830 AK095099 AK225687 BC001419 AF151821 NM_001024732 NM_016011 AK315274	-639029	-	TSC_hg19_v1_chr1_-_29557417 AK226084 CR456703 AB528613	-639096	-	TSC_hg19_v1_chr1_+_31191648 AK057725	995155	+	TSC_hg19_v1_chr1_-_31196436 AK312949 NM_002379 AK075519	999956	-	AB383742 TSC_hg19_v1_chr1_-_31230622 D42042 U30498 AK297014 AK307303 AK292009 BC106896 BC106897 U51240	1034156	-	NM_001195001|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_005704|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133177|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##NM_133178|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X97198|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U73727|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##BC146655|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##X95712|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##U71075|PTPRU|10076|protein tyrosine phosphatase, receptor type, U##AK300889|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK025830|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK095099|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK225687|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##BC001419|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AF151821|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_001024732|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##NM_016011|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK315274|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK226084|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##CR456703|MECR|51102|mitochondrial trans-2-enoyl-CoA reductase##AK057725|LOC100129196|100129196|uncharacterized LOC100129196##AK312949|MATN1|4146|matrilin 1, cartilage matrix protein##NM_002379|MATN1|4146|matrilin 1, cartilage matrix protein##AK075519|MATN1|4146|matrilin 1, cartilage matrix protein##D42042|LAPTM5|7805|lysosomal protein transmembrane 5##U30498|LAPTM5|7805|lysosomal protein transmembrane 5##AK297014|LAPTM5|7805|lysosomal protein transmembrane 5##AK292009|LAPTM5|7805|lysosomal protein transmembrane 5##BC106896|LAPTM5|7805|lysosomal protein transmembrane 5##BC106897|LAPTM5|7805|lysosomal protein transmembrane 5##U51240|LAPTM5|7805|lysosomal protein transmembrane 5	0.0	0.0	
chr14	71089014	71089141	reg1015356.p1	4.194	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-21700	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-21717	-	BC025378 NM_003814	-87346	-	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	19532	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	186732	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	285056	+	AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##BC025378|ADAM20|8748|ADAM metallopeptidase domain 20##NM_003814|ADAM20|8748|ADAM metallopeptidase domain 20##D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)	0.0	0.0	
chr14	95731953	95732058	reg1014486.p2	4.194	+	TSC_hg19_v1_chr14_+_95624023 BC040596	-107984	+	TSC_hg19_v1_chr14_-_95623867 BC046934 AB023145 BC150287 NM_177438	-108213	-	AY929254 AY929255 AY929256 TSC_hg19_v1_chr14_-_95623633	-108383	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	54178	-	AK131436 BC146604 BX248076 NM_152592	210099	-	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	269010	-	BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)##BC046934|DICER1|23405|dicer 1, ribonuclease type III##AB023145|DICER1|23405|dicer 1, ribonuclease type III##BC150287|DICER1|23405|dicer 1, ribonuclease type III##NM_177438|DICER1|23405|dicer 1, ribonuclease type III##AY929254|DICER1|23405|dicer 1, ribonuclease type III##AY929255|DICER1|23405|dicer 1, ribonuclease type III##AY929256|DICER1|23405|dicer 1, ribonuclease type III##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)	0.0	0.018375	
chr16	18890949	18891078	reg1011143.p1	4.194	+	AK301636 CU679669 TSC_hg19_v1_chr16_-_18812870 BC010281 D31885 NM_015161 AK291137 AK308092 BX648446 AK300825 AK300869 AK307315	-78231	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	-89358	-	TSC_hg19_v1_chr16_-_18798077 AK127316	-92917	-	TSC_hg19_v1_chr16_-_18937724 NM_015092 AB061371	46718	-	AK094664 NM_024847 TSC_hg19_v1_chr16_+_18995296 AY236498 BC047719 AY263165 BC036205 AK293874 CU690480	104306	+	TSC_hg19_v1_chr16_+_18995511 CR933669 NM_001160364	104545	+	AK301636|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC010281|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##D31885|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##NM_015161|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK291137|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK308092|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BX648446|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300825|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK300869|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##AK307315|ARL6IP1|23204|ADP-ribosylation factor-like 6 interacting protein 1##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a##NM_015092|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AB061371|SMG1|23049|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)##AK094664|TMC7|79905|transmembrane channel-like 7##NM_024847|TMC7|79905|transmembrane channel-like 7##AY236498|TMC7|79905|transmembrane channel-like 7##BC047719|TMC7|79905|transmembrane channel-like 7##AY263165|TMC7|79905|transmembrane channel-like 7##BC036205|TMC7|79905|transmembrane channel-like 7##AK293874|TMC7|79905|transmembrane channel-like 7##CR933669|TMC7|79905|transmembrane channel-like 7##NM_001160364|TMC7|79905|transmembrane channel-like 7	0.0	0.0	
chr16	30361896	30362076	reg1011917.p3	4.194	+	TSC_hg19_v1_chr16_-_30346695 AK289905 BC063703	-15287	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-151418	+	BC022832 NM_001031827 NM_001039182	-156360	-	BC013854 NM_001243646	4268	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	4614	-	NM_006110 TSC_hg19_v1_chr16_-_30366682	4696	-	AK289905|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC063703|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##BC013854|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_001243646|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_006110|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2	0.047145	0.0	
chr21	32996150	32996269	reg1011711.p1	4.194	+	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	-64851	-	AB096964 NM_001099219	-585415	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-742351	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	35798	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	77909	-	AL834304 BC052286 BC064990 TSC_hg19_v1_chr21_-_33104271 AK057840 AK308406	108063	-	NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4##AL834304|SCAF4|57466|SR-related CTD-associated factor 4##BC052286|SCAF4|57466|SR-related CTD-associated factor 4##BC064990|SCAF4|57466|SR-related CTD-associated factor 4##AK057840|SCAF4|57466|SR-related CTD-associated factor 4##AK308406|SCAF4|57466|SR-related CTD-associated factor 4	0.904808	0.034842	denovo_WM_7:49:0.892
chr22	19936469	19936636	reg1016462.p1	4.194	+	TSC_hg19_v1_chr22_-_19929453 AF106697	-7072	-	TSC_hg19_v1_chr22_-_19929342 AF044212 NM_006440	-7207	-	TSC_hg19_v1_chr22_-_19929330 AB019694 AF201385 BC099923 AK097708 BC038708 AF171054	-7225	-	NM_001135161 AK129492	1964	+	NM_001135162 BC100018	2496	+	AB462972 BT007125 CR456997 CU012983 CU013271 CU680120 DQ893411 DQ896732 FJ410132 TSC_hg19_v1_chr22_+_19950078 NM_007310 EF217321 EF217322 EF212883 FJ410131 CU674210	13630	+	AF106697|TXNRD2|10587|thioredoxin reductase 2##AF044212|TXNRD2|10587|thioredoxin reductase 2##NM_006440|TXNRD2|10587|thioredoxin reductase 2##AB019694|TXNRD2|10587|thioredoxin reductase 2##AF201385|TXNRD2|10587|thioredoxin reductase 2##BC099923|TXNRD2|10587|thioredoxin reductase 2##AK097708|TXNRD2|10587|thioredoxin reductase 2##BC038708|TXNRD2|10587|thioredoxin reductase 2##AF171054|TXNRD2|10587|thioredoxin reductase 2##NM_001135161|COMT|1312|catechol-O-methyltransferase##NM_001135162|COMT|1312|catechol-O-methyltransferase##BC100018|COMT|1312|catechol-O-methyltransferase##BT007125|COMT|1312|catechol-O-methyltransferase##CR456997|COMT|1312|catechol-O-methyltransferase##CU012983|COMT|1312|catechol-O-methyltransferase##CU013271|COMT|1312|catechol-O-methyltransferase##DQ893411|COMT|1312|catechol-O-methyltransferase##DQ896732|COMT|1312|catechol-O-methyltransferase##FJ410132|COMT|1312|catechol-O-methyltransferase##NM_007310|COMT|1312|catechol-O-methyltransferase##EF217321|COMT|1312|catechol-O-methyltransferase##EF217322|COMT|1312|catechol-O-methyltransferase##FJ410131|COMT|1312|catechol-O-methyltransferase	0.997733	0.0	
chrX	39018944	39019079	reg1015457.p1	4.194	+	TSC_hg19_v1_chrX_+_38663536 AK001248	-355471	+	TSC_hg19_v1_chrX_+_38663455 AJ272057	-355551	+	BC008908 NM_021242	-355939	+	AF317391 AF317392 AY316592 TSC_hg19_v1_chrX_-_39956720 NM_001123385 NM_017745	937681	-	BC114220 NM_001123383 NM_001123384	1017570	-	AK297760 AK075382 TSC_hg19_v1_chrX_+_40440221 AF248966 AY038990 NM_005765 AK296614	1421175	+	AK001248|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AJ272057|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##BC008908|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##NM_021242|MID1IP1|58526|MID1 interacting protein 1 (gastrulation specific G12 homolog (zebrafish))##AF317391|BCOR|54880|BCL6 corepressor##AF317392|BCOR|54880|BCL6 corepressor##AY316592|BCOR|54880|BCL6 corepressor##NM_001123385|BCOR|54880|BCL6 corepressor##NM_017745|BCOR|54880|BCL6 corepressor##BC114220|BCOR|54880|BCL6 corepressor##NM_001123383|BCOR|54880|BCL6 corepressor##NM_001123384|BCOR|54880|BCL6 corepressor##AK297760|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK075382|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AF248966|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AY038990|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##NM_005765|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2##AK296614|ATP6AP2|10159|ATPase, H+ transporting, lysosomal accessory protein 2	1.97911	0.0	denovo_WM_7:3:0.960	denovo_WM_7:18:0.822
chr1	117474012	117474089	reg1008182.p1	4.193	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	-21408	+	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	-176943	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-263667	-	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	70355	+	AK291017 TSC_hg19_v1_chr1_+_117602939	128874	+	TSC_hg19_v1_chr1_+_117602948 AF073771 NM_003594 AF080255 BC015341 BC030058	128904	+	AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule##AK291017|TTF2|8458|transcription termination factor, RNA polymerase II##AF073771|TTF2|8458|transcription termination factor, RNA polymerase II##NM_003594|TTF2|8458|transcription termination factor, RNA polymerase II##AF080255|TTF2|8458|transcription termination factor, RNA polymerase II##BC015341|TTF2|8458|transcription termination factor, RNA polymerase II##BC030058|TTF2|8458|transcription termination factor, RNA polymerase II	0.995173	0.0	
chr11	58373488	58373624	reg1012126.p2	4.193	+	TSC_hg19_v1_chr11_+_58346697 AB056107 AB057443 CU690828	-26861	+	TSC_hg19_v1_chr11_+_58346591 BC051743 NM_001197051 NM_053023	-26973	+	BC034230 TSC_hg19_v1_chr11_-_58345666 AK300955 NM_001143995 AK299264	-27895	-	BC069167 NM_000614 BC068030 AK314118 BC074963 BC074964 CU686605 S72921	16629	+	AF023466 BC009785 NM_005838 NM_201648	125851	-	BC021682 NM_145016 BC016789	238432	-	AB056107|ZFP91|80829|zinc finger protein 91 homolog (mouse)##AB057443|ZFP91-CNTF|386607|ZFP91-CNTF readthrough##BC051743|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_001197051|ZFP91|80829|zinc finger protein 91 homolog (mouse)##NM_053023|ZFP91|80829|zinc finger protein 91 homolog (mouse)##BC034230|LPXN|9404|leupaxin##AK300955|LPXN|9404|leupaxin##NM_001143995|LPXN|9404|leupaxin##AK299264|LPXN|9404|leupaxin##BC069167|CNTF|1270|ciliary neurotrophic factor##NM_000614|CNTF|1270|ciliary neurotrophic factor##BC068030|CNTF|1270|ciliary neurotrophic factor##AK314118|CNTF|1270|ciliary neurotrophic factor##BC074963|CNTF|1270|ciliary neurotrophic factor##BC074964|CNTF|1270|ciliary neurotrophic factor##S72921|CNTF|1270|ciliary neurotrophic factor##AF023466|GLYAT|10249|glycine-N-acyltransferase##BC009785|GLYAT|10249|glycine-N-acyltransferase##NM_005838|GLYAT|10249|glycine-N-acyltransferase##NM_201648|GLYAT|10249|glycine-N-acyltransferase##BC021682|GLYATL2|219970|glycine-N-acyltransferase-like 2##NM_145016|GLYATL2|219970|glycine-N-acyltransferase-like 2##BC016789|GLYATL2|219970|glycine-N-acyltransferase-like 2	0.0	0.0	
chr1	32606841	32606942	reg1015100.p2	4.193	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	-33244	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	-68317	+	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	-68387	+	TSC_hg19_v1_chr1_+_32645315 AL832636 AL832338	38396	+	TSC_hg19_v1_chr1_+_32645343 AK096939 NM_175852	38450	+	TSC_hg19_v1_chr1_+_32645661 AL832637	38765	+	NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL832636|TXLNA|200081|taxilin alpha##AL832338|TXLNA|200081|taxilin alpha##AK096939|TXLNA|200081|taxilin alpha##NM_175852|TXLNA|200081|taxilin alpha##AL832637|TXLNA|200081|taxilin alpha	1.008702	0.0	
chr22	26800392	26800511	reg1012330.p1	4.193	+	CR456574 CU013173 CU013461 AB041736 TSC_hg19_v1_chr22_+_26565704	-234788	+	TSC_hg19_v1_chr22_+_26565455 AB023144 BC126115 BC143851 BC143854	-234954	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	-235014	+	TSC_hg19_v1_chr22_+_26825246 NM_020437 BC036753 AK315112	24873	+	AK097886 BC035614 AK054717 AL365512 NM_152841	75012	-	TSC_hg19_v1_chr22_-_26879750 AK057648 AK290211	79291	-	CR456574|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013173|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013461|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB041736|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB023144|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC126115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143851|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143854|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_020437|ASPHD2|57168|aspartate beta-hydroxylase domain containing 2##BC036753|ASPHD2|57168|aspartate beta-hydroxylase domain containing 2##AK315112|ASPHD2|57168|aspartate beta-hydroxylase domain containing 2##AK097886|HPS4|89781|Hermansky-Pudlak syndrome 4##BC035614|HPS4|89781|Hermansky-Pudlak syndrome 4##AK054717|HPS4|89781|Hermansky-Pudlak syndrome 4##AL365512|HPS4|89781|Hermansky-Pudlak syndrome 4##NM_152841|HPS4|89781|Hermansky-Pudlak syndrome 4##AK057648|HPS4|89781|Hermansky-Pudlak syndrome 4##AK290211|HPS4|89781|Hermansky-Pudlak syndrome 4	0.032934	0.0	
chr22	29561323	29561460	reg1010262.p1	4.193	+	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	-92369	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	-103542	-	TSC_hg19_v1_chr22_+_29449893 BC042614	-111466	+	TSC_hg19_v1_chr22_+_29601914 BC046358 NM_133455 CR456407 CU012965 CU013253 AB463024 AJ416090	40501	+	TSC_hg19_v1_chr22_-_29663824 AL050346 NM_012265	102477	-	NM_001163285 NM_001163286 NM_001163287 NM_005243 NM_013986 TSC_hg19_v1_chr22_+_29664088	102656	+	BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##BC042614|ZNRF3|84133|zinc and ring finger 3##BC046358|EMID1|129080|EMI domain containing 1##NM_133455|EMID1|129080|EMI domain containing 1##CR456407|EMID1|129080|EMI domain containing 1##CU012965|EMID1|129080|EMI domain containing 1##CU013253|EMID1|129080|EMI domain containing 1##AJ416090|EMID1|129080|EMI domain containing 1##AL050346|RHBDD3|25807|rhomboid domain containing 3##NM_012265|RHBDD3|25807|rhomboid domain containing 3##NM_001163285|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163286|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163287|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_005243|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_013986|EWSR1|2130|Ewing sarcoma breakpoint region 1	0.995706	0.0	denovo_WM_7:5:0.972
chr9	18894232	18894324	reg1015882.p1	4.193	+	AK291956 TSC_hg19_v1_chr9_+_18474150 BC030262 AF176313 CU688870	-420095	+	NM_001040272 NM_052866 TSC_hg19_v1_chr9_+_18474091 AK290667 AY358327	-420190	+	AK293546 NM_003026 TSC_hg19_v1_chr9_+_17579120 BC032825 AK057744 AK312400 AK293592 AF036268 X99657 AB464202 CU689554 AB206840 AB206841 BT019682 CR542086 CR542102	-1315182	+	BC033489 AK292245 AK057474 NM_153707	138941	-	TSC_hg19_v1_chr9_+_19049372 NM_006570	155085	+	TSC_hg19_v1_chr9_+_19049391 BC009990	155113	+	AK291956|ADAMTSL1|92949|ADAMTS-like 1##BC030262|ADAMTSL1|92949|ADAMTS-like 1##AF176313|ADAMTSL1|92949|ADAMTS-like 1##NM_001040272|ADAMTSL1|92949|ADAMTS-like 1##NM_052866|ADAMTSL1|92949|ADAMTS-like 1##AK290667|ADAMTSL1|92949|ADAMTS-like 1##AY358327|ADAMTSL1|92949|ADAMTS-like 1##AK293546|SH3GL2|6456|SH3-domain GRB2-like 2##NM_003026|SH3GL2|6456|SH3-domain GRB2-like 2##BC032825|SH3GL2|6456|SH3-domain GRB2-like 2##AK057744|SH3GL2|6456|SH3-domain GRB2-like 2##AK312400|SH3GL2|6456|SH3-domain GRB2-like 2##AK293592|SH3GL2|6456|SH3-domain GRB2-like 2##AF036268|SH3GL2|6456|SH3-domain GRB2-like 2##X99657|SH3GL2|6456|SH3-domain GRB2-like 2##AB206840|SH3GL2|6456|SH3-domain GRB2-like 2##BT019682|SH3GL2|6456|SH3-domain GRB2-like 2##CR542086|SH3GL2|6456|SH3-domain GRB2-like 2##CR542102|SH3GL2|6456|SH3-domain GRB2-like 2##BC033489|FAM154A|158297|family with sequence similarity 154, member A##AK292245|FAM154A|158297|family with sequence similarity 154, member A##AK057474|FAM154A|158297|family with sequence similarity 154, member A##NM_153707|FAM154A|158297|family with sequence similarity 154, member A##NM_006570|RRAGA|10670|Ras-related GTP binding A##BC009990|RRAGA|10670|Ras-related GTP binding A	0.998142	0.0	denovo_WM_7:73:0.449	denovo_WM_7:74:0.449
chr10	119416346	119416455	reg1013090.p1	4.192	+	TSC_hg19_v1_chr10_+_119302713 AB463605	-113657	+	AF301598 NM_001165924 NM_004098	-114445	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	-114484	-	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	389644	-	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	390030	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	685424	-	AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A	0.0	0.0	
chr1	159893571	159893751	reg1010497.p2	4.192	+	BC089391 BC027874 NM_012337 BC064386 AF094758 AK308262 AK225566 AK225582 AK292249	-23736	-	HQ258612 BC132893 BC132895 NM_001013661	-61283	-	AK096506 NM_001134233	-68525	-	BC009357 TSC_hg19_v1_chr1_-_159895269	1604	-	TSC_hg19_v1_chr1_-_159895294 BC002616 D21261 GU727636 NM_003564 AK291562 AK298654	1626	-	TSC_hg19_v1_chr1_-_159915401 AB037776 BC030141 NM_001135050 NM_020789 AY358128	21733	-	BC089391|CCDC19|25790|coiled-coil domain containing 19##BC027874|CCDC19|25790|coiled-coil domain containing 19##NM_012337|CCDC19|25790|coiled-coil domain containing 19##BC064386|CCDC19|25790|coiled-coil domain containing 19##AF094758|CCDC19|25790|coiled-coil domain containing 19##AK308262|CCDC19|25790|coiled-coil domain containing 19##AK225566|CCDC19|25790|coiled-coil domain containing 19##AK225582|CCDC19|25790|coiled-coil domain containing 19##AK292249|CCDC19|25790|coiled-coil domain containing 19##HQ258612|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC132893|VSIG8|391123|V-set and immunoglobulin domain containing 8##BC132895|VSIG8|391123|V-set and immunoglobulin domain containing 8##NM_001013661|VSIG8|391123|V-set and immunoglobulin domain containing 8##AK096506|C1orf204|284677|chromosome 1 open reading frame 204##NM_001134233|C1orf204|284677|chromosome 1 open reading frame 204##BC009357|TAGLN2|8407|transgelin 2##BC002616|TAGLN2|8407|transgelin 2##D21261|TAGLN2|8407|transgelin 2##GU727636|TAGLN2|8407|transgelin 2##NM_003564|TAGLN2|8407|transgelin 2##AK291562|TAGLN2|8407|transgelin 2##AK298654|TAGLN2|8407|transgelin 2##AB037776|IGSF9|57549|immunoglobulin superfamily, member 9##BC030141|IGSF9|57549|immunoglobulin superfamily, member 9##NM_001135050|IGSF9|57549|immunoglobulin superfamily, member 9##NM_020789|IGSF9|57549|immunoglobulin superfamily, member 9##AY358128|IGSF9|57549|immunoglobulin superfamily, member 9	0.0	0.0	
chr17	47392922	47393035	reg1012957.p1	4.192	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-84835	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-104901	+	NM_001198754	-105043	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	46602	-	BC095460 TSC_hg19_v1_chr17_-_47492215	99237	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	99270	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	0.999536	0.0	denovo_WM_7:-49:0.849
chr4	127774940	127775044	reg1014229.p1	4.192	+	NM_024582	-1537426	+	TSC_hg19_v1_chr4_-_125633888 AK291068 AK295135 NM_001167882 NM_020337	-2141178	-	AK026960 BC063856 NM_005841	-3454319	+	TSC_hg19_v1_chr4_+_128554111 NM_015693 AK291481 BC051698 AB033110 BC130611 BC144182 HQ258681 CU690824	779147	+	TSC_hg19_v1_chr4_+_128651573 NM_031291 AL136857 AY550240 BC022032 AB528294 AM393262 CU692468 AJ863129	876617	+	TSC_hg19_v1_chr4_+_128703445 BC040560 NM_014278	928441	+	NM_024582|FAT4|79633|FAT tumor suppressor homolog 4 (Drosophila)##AK291068|ANKRD50|57182|ankyrin repeat domain 50##AK295135|ANKRD50|57182|ankyrin repeat domain 50##NM_001167882|ANKRD50|57182|ankyrin repeat domain 50##NM_020337|ANKRD50|57182|ankyrin repeat domain 50##AK026960|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##BC063856|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_005841|SPRY1|10252|sprouty homolog 1, antagonist of FGF signaling (Drosophila)##NM_015693|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AK291481|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC051698|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##AB033110|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC130611|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##BC144182|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##HQ258681|INTU|27152|inturned planar cell polarity effector homolog (Drosophila)##NM_031291|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AL136857|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AY550240|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC022032|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AM393262|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##AJ863129|SLC25A31|83447|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31##BC040560|HSPA4L|22824|heat shock 70kDa protein 4-like##NM_014278|HSPA4L|22824|heat shock 70kDa protein 4-like	0.998226	0.0	denovo_WM_7:-51:0.474	denovo_WM_7:-52:0.474
chr7	74347592	74347725	reg1018433.p1	4.192	+	BC052588 TSC_hg19_v1_chr7_+_74306933 BC027480 D38436 D38502 AK309660	-40738	+	TSC_hg19_v1_chr7_-_74306725 BC095487	-40937	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	-40975	-	BC147030 BC147031 NM_001145063	31422	+	AB463349 AF410455 AM392683 DQ893169 TSC_hg19_v1_chr7_-_74489627 AL136804 AK309117 BC007823 BC019008	141944	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	141980	-	BC052588|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##BC027480|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38436|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##D38502|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##AK309660|PMS2P5|5383|postmeiotic segregation increased 2 pseudogene 5##AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##NM_001145063|GATSL1|389523|GATS protein-like 1##AF410455|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AM392683|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##DQ893169|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AL136804|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK309117|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC007823|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC019008|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16	0.966716	0.0	denovo_WM_7:65:0.322	denovo_WM_7:66:0.322	denovo_WM_7:67:0.322
chrX	82116507	82116687	reg1015539.p2	4.192	+	TSC_hg19_v1_chrX_+_80457600 BC016709 AL136718 AK129610 AF042081 AK310011 AB590910 CR533478	-1658949	+	TSC_hg19_v1_chrX_+_80457572 AK309351	-1659021	+	AK094058 AX748432 NM_030763	-1659157	-	AK314967 NM_000307 TSC_hg19_v1_chrX_+_82763302 X82324 AB464667	646702	+	BC021669 BC058019 BC070355 BC126461 NM_021118 HQ258477	999574	+	AB587525 CR536566 AK313240 BC143647 BC143648 NM_014496 TSC_hg19_v1_chrX_-_83443024	1326375	-	BC016709|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AL136718|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK129610|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AF042081|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK310011|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##CR533478|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK314967|POU3F4|5456|POU class 3 homeobox 4##NM_000307|POU3F4|5456|POU class 3 homeobox 4##X82324|POU3F4|5456|POU class 3 homeobox 4##BC021669|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC058019|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC070355|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##BC126461|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##NM_021118|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##HQ258477|CYLC1|1538|cylicin, basic protein of sperm head cytoskeleton 1##CR536566|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##AK313240|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##BC143647|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##BC143648|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6##NM_014496|RPS6KA6|27330|ribosomal protein S6 kinase, 90kDa, polypeptide 6	0.985796	0.0	denovo_WM_7:8:0.471	denovo_WM_7:9:0.471
chr12	6537381	6537490	reg1015839.p1	4.191	+	TSC_hg19_v1_chr12_+_6493333 AK095418 BC026262 AK027080 L04270 NM_002342 AB527559 DQ891995 DQ895185 CU693188	-44063	+	AK304379 NM_001159575	-50913	-	NM_001038	-52531	-	AK315732 NM_001242 BC012160 M63928 DQ892296 EU176659 AB590221 CU680244	16711	+	NM_018009 TSC_hg19_v1_chr12_+_6561272 BC015017 AK223163 AK001005 AK002056 AK222956 AK098035 HQ258015	23859	+	TSC_hg19_v1_chr12_-_6579844 AF060538 BC023286 AK289498 AK296294 AK303137 AK309184 NM_014231 NM_016830 NM_199245	42379	-	AK095418|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##BC026262|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK027080|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##L04270|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##NM_002342|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ891995|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ895185|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK304379|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001159575|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001038|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##AK315732|CD27|939|CD27 molecule##NM_001242|CD27|939|CD27 molecule##BC012160|CD27|939|CD27 molecule##M63928|CD27|939|CD27 molecule##DQ892296|CD27|939|CD27 molecule##EU176659|CD27|939|CD27 molecule##NM_018009|TAPBPL|55080|TAP binding protein-like##BC015017|TAPBPL|55080|TAP binding protein-like##AK223163|TAPBPL|55080|TAP binding protein-like##AK001005|TAPBPL|55080|TAP binding protein-like##AK002056|TAPBPL|55080|TAP binding protein-like##AK222956|TAPBPL|55080|TAP binding protein-like##AK098035|TAPBPL|55080|TAP binding protein-like##HQ258015|TAPBPL|55080|TAP binding protein-like##AF060538|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##BC023286|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK289498|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK296294|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK303137|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK309184|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_014231|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_016830|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_199245|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)	0.995024	0.0	denovo_WM_7:-14:0.902
chr19	6592603	6592673	reg1011854.p1	4.191	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-1480	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-1532	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-1606	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	77486	-	AF064090 NM_003807 NM_172014	77960	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	128018	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.0	0.0	
chr2	12423152	12423310	reg1011614.p1	4.191	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-536456	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-612940	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-740388	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	434022	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	434685	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	435166	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.0	0.0	
chr5	43018319	43018499	reg1009893.p2	4.191	+	TSC_hg19_v1_chr5_-_42993436 AK056817	-24963	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-206418	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-261471	+	AB463523 BC067873 AY032883 NM_001014279	21887	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	102592	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	103205	+	AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131	0.0	0.0	
chr8	144767692	144767799	reg1013557.p1	4.191	+	TSC_hg19_v1_chr8_+_144766677 AK095138	-1068	+	TSC_hg19_v1_chr8_+_144766648 NM_001100598 NM_001100599 NM_173831 AK001126 AK290432 AK055198 AK300926 AK055263 BC014894	-1105	+	AB014528 BC067516 BC067517 BC067518 NM_014789 BC075056 BC075057 AB463373 EU446754	-35810	+	NM_001162914	22533	-	TSC_hg19_v1_chr8_+_144798518 NM_139021 BC028034 AY065978 AB587543 DQ891473 DQ894661 CU688372 AY994058	30782	+	TSC_hg19_v1_chr8_-_144810692 AK127960	43005	-	AK095138|ZNF707|286075|zinc finger protein 707##NM_001100598|ZNF707|286075|zinc finger protein 707##NM_001100599|ZNF707|286075|zinc finger protein 707##NM_173831|ZNF707|286075|zinc finger protein 707##AK001126|ZNF707|286075|zinc finger protein 707##AK290432|ZNF707|286075|zinc finger protein 707##AK055198|ZNF707|286075|zinc finger protein 707##AK055263|ZNF707|286075|zinc finger protein 707##BC014894|ZNF707|286075|zinc finger protein 707##AB014528|ZNF623|9831|zinc finger protein 623##BC067516|ZNF623|9831|zinc finger protein 623##BC067517|ZNF623|9831|zinc finger protein 623##BC067518|ZNF623|9831|zinc finger protein 623##NM_014789|ZNF623|9831|zinc finger protein 623##BC075056|ZNF623|9831|zinc finger protein 623##BC075057|ZNF623|9831|zinc finger protein 623##EU446754|ZNF623|9831|zinc finger protein 623##NM_001162914|CCDC166|100130274|coiled-coil domain containing 166##NM_139021|MAPK15|225689|mitogen-activated protein kinase 15##BC028034|MAPK15|225689|mitogen-activated protein kinase 15##AY065978|MAPK15|225689|mitogen-activated protein kinase 15##DQ891473|MAPK15|225689|mitogen-activated protein kinase 15##DQ894661|MAPK15|225689|mitogen-activated protein kinase 15##AY994058|MAPK15|225689|mitogen-activated protein kinase 15##AK127960|FAM83H|286077|family with sequence similarity 83, member H	0.998892	0.0	
chr8	81998062	81998150	reg1005773.p1	4.191	+	AK131274 NM_001033723	-211091	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-599622	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-914336	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	26208	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	194667	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	361563	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.989918	0.0	
chr10	123686773	123686930	reg1013414.p1	4.190	+	X52832 U11814 M87770 M87772 AB030073 AB030074 AB030075 AB030076 AB030077 AB030078 M80634 M87771 TSC_hg19_v1_chr10_-_123357946 M35718 M97193 BC096749 AK026508 BC039243 NM_000141 NM_001144917 NM_001144918 NM_001144919 NM_022970	-329093	-	AK294026 NM_001144915	-330693	-	AK308621 NM_001144916	-333080	-	TSC_hg19_v1_chr10_-_123687547 AK296356 AF079098 AF079099 AK303604 AK313057 BC022026 NM_001001976 NM_007041	674	-	TSC_hg19_v1_chr10_-_123687979 AK299101 AK308926	1149	-	TSC_hg19_v1_chr10_-_123734310 AK301658 AK056579	47463	-	X52832|FGFR2|2263|fibroblast growth factor receptor 2##U11814|FGFR2|2263|fibroblast growth factor receptor 2##M87770|FGFR2|2263|fibroblast growth factor receptor 2##M87772|FGFR2|2263|fibroblast growth factor receptor 2##AB030073|FGFR2|2263|fibroblast growth factor receptor 2##AB030074|FGFR2|2263|fibroblast growth factor receptor 2##AB030075|FGFR2|2263|fibroblast growth factor receptor 2##AB030076|FGFR2|2263|fibroblast growth factor receptor 2##AB030077|FGFR2|2263|fibroblast growth factor receptor 2##AB030078|FGFR2|2263|fibroblast growth factor receptor 2##M80634|FGFR2|2263|fibroblast growth factor receptor 2##M87771|FGFR2|2263|fibroblast growth factor receptor 2##M97193|FGFR2|2263|fibroblast growth factor receptor 2##BC096749|FGFR2|2263|fibroblast growth factor receptor 2##AK026508|FGFR2|2263|fibroblast growth factor receptor 2##BC039243|FGFR2|2263|fibroblast growth factor receptor 2##NM_000141|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144917|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144918|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144919|FGFR2|2263|fibroblast growth factor receptor 2##NM_022970|FGFR2|2263|fibroblast growth factor receptor 2##AK294026|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144915|FGFR2|2263|fibroblast growth factor receptor 2##AK308621|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144916|FGFR2|2263|fibroblast growth factor receptor 2##AK296356|ATE1|11101|arginyltransferase 1##AF079098|ATE1|11101|arginyltransferase 1##AF079099|ATE1|11101|arginyltransferase 1##AK303604|ATE1|11101|arginyltransferase 1##AK313057|ATE1|11101|arginyltransferase 1##BC022026|ATE1|11101|arginyltransferase 1##NM_001001976|ATE1|11101|arginyltransferase 1##NM_007041|ATE1|11101|arginyltransferase 1##AK299101|ATE1|11101|arginyltransferase 1##AK308926|ATE1|11101|arginyltransferase 1##AK301658|NSMCE4A|54780|non-SMC element 4 homolog A (S. cerevisiae)##AK056579|NSMCE4A|54780|non-SMC element 4 homolog A (S. cerevisiae)	1.558925	0.0	denovo_WM_7:-3:0.368	denovo_WM_7:12:0.965
chr11	9483753	9483844	reg1016594.p1	4.190	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	-1255	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-1670	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-77578	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	111415	+	X62048 TSC_hg19_v1_chr11_+_9595313	111527	+	BC051831 TSC_hg19_v1_chr11_+_9595437	111635	+	NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)	1.584525	0.0	denovo_WM_7:17:0.797
chr1	207264682	207264825	reg1013992.p1	4.190	+	BC005378 NM_000716 NM_001017364 L11245 NM_001017367 AK315137	-2132	+	NM_001017365 NM_001017366	-2542	+	AK292883 TSC_hg19_v1_chr1_+_207226619 NM_001018053 NM_006212 AJ005578 AF470623 AB044805 BC112103 BC112105 BC069350 BC069385 BC069583 BC069586 BC069600 BC075075 BC075076	-38116	+	TSC_hg19_v1_chr1_+_207277658 BC022312 NM_000715 AK303798 AK313164 M31452 AK303793	12896	+	NM_000574 NM_001114752 TSC_hg19_v1_chr1_+_207494999 AF052110 AX772832	230159	+	TSC_hg19_v1_chr1_+_207495024 AK312448 AK300621 AK298549 BC001288 M30142 M31516	230282	+	BC005378|C4BPB|725|complement component 4 binding protein, beta##NM_000716|C4BPB|725|complement component 4 binding protein, beta##NM_001017364|C4BPB|725|complement component 4 binding protein, beta##L11245|C4BPB|725|complement component 4 binding protein, beta##NM_001017367|C4BPB|725|complement component 4 binding protein, beta##AK315137|C4BPB|725|complement component 4 binding protein, beta##NM_001017365|C4BPB|725|complement component 4 binding protein, beta##NM_001017366|C4BPB|725|complement component 4 binding protein, beta##AK292883|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##NM_001018053|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##NM_006212|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##AJ005578|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##AF470623|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##AB044805|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC112103|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC112105|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069350|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069385|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069583|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069586|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC069600|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC075075|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC075076|PFKFB2|5208|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2##BC022312|C4BPA|722|complement component 4 binding protein, alpha##NM_000715|C4BPA|722|complement component 4 binding protein, alpha##AK303798|C4BPA|722|complement component 4 binding protein, alpha##AK313164|C4BPA|722|complement component 4 binding protein, alpha##M31452|C4BPA|722|complement component 4 binding protein, alpha##AK303793|C4BPA|722|complement component 4 binding protein, alpha##NM_000574|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##NM_001114752|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AF052110|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK312448|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK300621|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##AK298549|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##BC001288|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M30142|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)##M31516|CD55|1604|CD55 molecule, decay accelerating factor for complement (Cromer blood group)	0.0	0.0	
chr14	25435576	25435689	reg1012833.p1	4.190	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-332214	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-356771	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-390186	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	83606	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1631356	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3800596	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.999017	0.0	denovo_WM_7:-28:0.477	denovo_WM_7:-29:0.477
chr3	101229733	101229830	reg1015992.p1	4.190	+	AF173155 AB593127 NM_016247 DQ980603 DQ980602	-190359	-	CU688850 EU832117 EU832211 AK025204 AL833204 BC030221 TSC_hg19_v1_chr3_-_100712327 NM_015429	-517491	-	TSC_hg19_v1_chr3_+_100428396 BC041600 BC023599	-801317	+	AM392620 AM393440 TSC_hg19_v1_chr3_-_101232029 AK297356 BC129988 BC062674 BX537943 AL833577 AF199458 NM_001077203 NM_020654	2247	-	TSC_hg19_v1_chr3_+_101280711 BC035967 AF226052 NM_017819 AK000439 AF086243 AF155111	50936	+	AK098760 TSC_hg19_v1_chr3_+_101293023	63224	+	AF173155|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##AB593127|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##NM_016247|IMPG2|50939|interphotoreceptor matrix proteoglycan 2##EU832117|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##EU832211|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AK025204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##AL833204|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC030221|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##NM_015429|ABI3BP|25890|ABI family, member 3 (NESH) binding protein##BC041600|TFG|10342|TRK-fused gene##BC023599|TFG|10342|TRK-fused gene##AM392620|SENP7|57337|SUMO1/sentrin specific peptidase 7##AM393440|SENP7|57337|SUMO1/sentrin specific peptidase 7##AK297356|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC129988|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC062674|SENP7|57337|SUMO1/sentrin specific peptidase 7##BX537943|SENP7|57337|SUMO1/sentrin specific peptidase 7##AL833577|SENP7|57337|SUMO1/sentrin specific peptidase 7##AF199458|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_001077203|SENP7|57337|SUMO1/sentrin specific peptidase 7##NM_020654|SENP7|57337|SUMO1/sentrin specific peptidase 7##BC035967|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF226052|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##NM_017819|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK000439|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF086243|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AF155111|RG9MTD1|54931|RNA (guanine-9-) methyltransferase domain containing 1##AK098760|PCNP|57092|PEST proteolytic signal containing nuclear protein	0.999414	0.0	
chr7	121011580	121011717	reg1014467.p1	4.190	+	AF169963 NM_057168	-42559	+	AF152584 NM_016087	-46228	+	AK025639 AK225313 TSC_hg19_v1_chr7_+_120702920	-308775	+	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	24689	-	TSC_hg19_v1_chr7_-_121036363 AK292731 AK290682 BC068526 NM_001040020 NM_014888	24766	-	NM_001206838 NM_001206839 NM_002851 TSC_hg19_v1_chr7_+_121513164	501513	+	AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##AF152584|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_016087|WNT16|51384|wingless-type MMTV integration site family, member 16##AK025639|C7orf58|79974|chromosome 7 open reading frame 58##AK225313|C7orf58|79974|chromosome 7 open reading frame 58##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C##AK292731|FAM3C|10447|family with sequence similarity 3, member C##AK290682|FAM3C|10447|family with sequence similarity 3, member C##BC068526|FAM3C|10447|family with sequence similarity 3, member C##NM_001040020|FAM3C|10447|family with sequence similarity 3, member C##NM_014888|FAM3C|10447|family with sequence similarity 3, member C##NM_001206838|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_001206839|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_002851|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1	0.044416	0.0	
chr7	2277609	2277686	reg1013986.p2	4.190	+	TSC_hg19_v1_chr7_-_2272581 AK090959 AK310831 AK314227 AX746704 NM_001013836 NM_001013837 NM_003550	-5067	-	TSC_hg19_v1_chr7_-_2272559 AF083811	-5087	-	AK310481 TSC_hg19_v1_chr7_-_2272542	-5112	-	TSC_hg19_v1_chr7_-_2281812 BC114514 BC114564	4160	-	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	4186	-	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	4228	+	AK090959|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310831|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK314227|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001013836|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001013837|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_003550|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AF083811|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310481|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##BC114514|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC114564|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1	0.459302	0.0	
chrX	18874450	18874556	reg1013060.p2	4.190	+	NM_006240 NM_152224 NM_152226 X97867 AK292235 BC036026	-165459	+	AB464151 AF014459 DQ426892 NM_000330	-184299	-	BC036091 NM_001037343	-414160	+	TSC_hg19_v1_chrX_-_19002476 NM_000292	127959	-	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	266164	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	487579	+	NM_006240|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152224|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##NM_152226|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##X97867|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##AK292235|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##BC036026|PPEF1|5475|protein phosphatase, EF-hand calcium binding domain 1##AF014459|RS1|6247|retinoschisin 1##DQ426892|RS1|6247|retinoschisin 1##NM_000330|RS1|6247|retinoschisin 1##BC036091|CDKL5|6792|cyclin-dependent kinase-like 5##NM_001037343|CDKL5|6792|cyclin-dependent kinase-like 5##NM_000292|PHKA2|5256|phosphorylase kinase, alpha 2 (liver)##BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1	0.08881	0.0	
chr19	30155875	30155977	reg1010302.p1	4.189	+	NM_006627 AK314790 TSC_hg19_v1_chr19_+_30097189 AF001176 BC013686 CR936714 Y18863 BC006098 AK303791 BC004438	-58737	+	NM_001146339	-138436	+	TSC_hg19_v1_chr19_-_29704107 NM_006003	-451805	-	NM_024310 TSC_hg19_v1_chr19_+_30156362 AK301616 AK027758 BC002744 BC018876	423	+	TSC_hg19_v1_chr19_+_30156375 AK225814	495	+	NM_001031726 TSC_hg19_v1_chr19_-_30206184 BC004957 BC009946 BC063518 AK057185	50166	-	NM_006627|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AK314790|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AF001176|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC013686|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##CR936714|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##Y18863|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC006098|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##AK303791|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##BC004438|POP4|10775|processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001146339|VSTM2B|342865|V-set and transmembrane domain containing 2B##NM_006003|UQCRFS1|7386|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1##NM_024310|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##AK301616|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##AK027758|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##BC002744|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##BC018876|PLEKHF1|79156|pleckstrin homology domain containing, family F (with FYVE domain) member 1##NM_001031726|C19orf12|83636|chromosome 19 open reading frame 12##BC004957|C19orf12|83636|chromosome 19 open reading frame 12##BC009946|C19orf12|83636|chromosome 19 open reading frame 12##BC063518|C19orf12|83636|chromosome 19 open reading frame 12##AK057185|C19orf12|83636|chromosome 19 open reading frame 12	0.997801	0.0	denovo_WM_7:-6:0.890
chr21	47079227	47079354	reg1006233.p2	4.189	+	TSC_hg19_v1_chr21_+_47063638 AK310131	-15661	+	TSC_hg19_v1_chr21_-_46962344 U17566 U15939 U19720 BC003068 AK313125 AK307623 NM_001205206 NM_194255	-116958	-	AK303168 NM_001205207	-124756	-	AF176329 NM_001130141 NM_020528 BC012061 AK310672	190598	+	TSC_hg19_v1_chr21_+_47401683 NM_001848 BC052575 AK298968 AK299396 AK307989 BC032821 X15879	322395	+	TSC_hg19_v1_chr21_+_47518062 NM_001849 NM_058174 NM_058175 BC065509	438760	+	AK310131|PCBP3|54039|poly(rC) binding protein 3##U17566|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U15939|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U19720|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##BC003068|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK313125|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK307623|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205206|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_194255|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK303168|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205207|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AF176329|PCBP3|54039|poly(rC) binding protein 3##NM_001130141|PCBP3|54039|poly(rC) binding protein 3##NM_020528|PCBP3|54039|poly(rC) binding protein 3##BC012061|PCBP3|54039|poly(rC) binding protein 3##AK310672|PCBP3|54039|poly(rC) binding protein 3##NM_001848|COL6A1|1291|collagen, type VI, alpha 1##BC052575|COL6A1|1291|collagen, type VI, alpha 1##AK298968|COL6A1|1291|collagen, type VI, alpha 1##AK299396|COL6A1|1291|collagen, type VI, alpha 1##AK307989|COL6A1|1291|collagen, type VI, alpha 1##BC032821|COL6A1|1291|collagen, type VI, alpha 1##X15879|COL6A1|1291|collagen, type VI, alpha 1##NM_001849|COL6A2|1292|collagen, type VI, alpha 2##NM_058174|COL6A2|1292|collagen, type VI, alpha 2##NM_058175|COL6A2|1292|collagen, type VI, alpha 2##BC065509|COL6A2|1292|collagen, type VI, alpha 2	0.998233	0.0	
chr2	182856359	182856482	reg1010559.p1	4.189	+	NM_001080545 AK129898 AF494535 BX647581 BC017943	-5771	+	TSC_hg19_v1_chr2_+_182756689 BC052581 BC064499 BC028706 AK291745 BX647257 AB116937 AB385517 BX647967 AK304238 BX648888	-99627	+	TSC_hg19_v1_chr2_+_182756494 NM_001130445 NM_006751 AK093143 AX747951 AB067514	-99889	+	AK295657 AB384753 DQ892369 DQ893372 DQ895578 DQ896694 AF110237 NM_005019 BC022480 AF110240 AF110236 NM_001003683 U40370 AK294239	530864	-	TSC_hg19_v1_chr2_+_183580986 AL832632 AK027647 NM_018981 AY358577 AF490904 AK027696 BC070034 BC117299 BC126168 AF038503	724654	+	TSC_hg19_v1_chr2_+_183582683 BC107425 AF314529 AY089971 HQ258514 HQ258651 AL832646 AK027450	726327	+	NM_001080545|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AK129898|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AF494535|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BX647581|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BC017943|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BC052581|SSFA2|6744|sperm specific antigen 2##BC064499|SSFA2|6744|sperm specific antigen 2##BC028706|SSFA2|6744|sperm specific antigen 2##AK291745|SSFA2|6744|sperm specific antigen 2##BX647257|SSFA2|6744|sperm specific antigen 2##AB116937|SSFA2|6744|sperm specific antigen 2##BX647967|SSFA2|6744|sperm specific antigen 2##AK304238|SSFA2|6744|sperm specific antigen 2##BX648888|SSFA2|6744|sperm specific antigen 2##NM_001130445|SSFA2|6744|sperm specific antigen 2##NM_006751|SSFA2|6744|sperm specific antigen 2##AB067514|SSFA2|6744|sperm specific antigen 2##AK295657|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ892369|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ893372|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ895578|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ896694|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AF110237|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##NM_005019|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##BC022480|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AF110236|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##NM_001003683|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##U40370|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AK294239|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AL832632|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027647|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##NM_018981|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AY358577|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF490904|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027696|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC070034|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC117299|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC126168|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF038503|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC107425|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF314529|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AY089971|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##HQ258514|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##HQ258651|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AL832646|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027450|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10	0.0	0.0	
chr3	105903505	105903604	reg1014514.p1	4.189	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-315747	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-482500	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-817732	+	TSC_hg19_v1_chr3_-_106959482 BC036229	1055925	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1056038	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1192756	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.0	0.0	
chr4	1213163	1213300	reg1016744.p2	4.189	+	CR627052 NM_001199021	-10482	-	BC104228 BC104229 BC112991 BC112992 BC044945 AK091779 AX747178 TSC_hg19_v1_chr4_-_1195337	-17989	-	TSC_hg19_v1_chr4_-_1166969 NM_001128325	-46253	-	AB527760 DQ891918 DQ895102 TSC_hg19_v1_chr4_-_1242878 AF091555 BC011655 U37408	29579	-	TSC_hg19_v1_chr4_-_1242910 BC072021 BC053320 NM_001012614 NM_001328 BC098400	29677	-	TSC_hg19_v1_chr4_+_1243060 AK125775 AK056133	29937	+	CR627052|LOC100130872|100130872|uncharacterized LOC100130872##NM_001199021|SPON2|10417|spondin 2, extracellular matrix protein##BC104228|LOC100130872|100130872|uncharacterized LOC100130872##BC104229|LOC100130872|100130872|uncharacterized LOC100130872##BC112991|LOC100130872|100130872|uncharacterized LOC100130872##BC112992|LOC100130872|100130872|uncharacterized LOC100130872##BC044945|LOC100130872|100130872|uncharacterized LOC100130872##AK091779|LOC100130872|100130872|uncharacterized LOC100130872##NM_001128325|SPON2|10417|spondin 2, extracellular matrix protein##DQ891918|CTBP1|1487|C-terminal binding protein 1##DQ895102|CTBP1|1487|C-terminal binding protein 1##AF091555|CTBP1|1487|C-terminal binding protein 1##BC011655|CTBP1|1487|C-terminal binding protein 1##U37408|CTBP1|1487|C-terminal binding protein 1##BC072021|CTBP1|1487|C-terminal binding protein 1##BC053320|CTBP1|1487|C-terminal binding protein 1##NM_001012614|CTBP1|1487|C-terminal binding protein 1##NM_001328|CTBP1|1487|C-terminal binding protein 1##BC098400|CTBP1|1487|C-terminal binding protein 1##AK125775|C4orf42|92070|chromosome 4 open reading frame 42##AK056133|C4orf42|92070|chromosome 4 open reading frame 42	0.0	0.0	
chr5	157145629	157145762	reg1013148.p1	4.189	+	NM_001145132	-47135	+	BC035142 AK055284 TSC_hg19_v1_chr5_-_157098473 AK302162	-47230	-	AB022083 AB022441 AK308329 AK225861 BC033492 NM_007017 NM_178424	-66296	-	AY463216 NM_017872 TSC_hg19_v1_chr5_+_157158427 AK000553 AK223119 AK304590 BC023521 AL136669 AK021663 AB528251 AM392629 CR533503 BC001523 BC001852 CU674750	12733	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	25045	+	AK055297 TSC_hg19_v1_chr5_+_157184422	38685	+	NM_001145132|C5orf52|100190949|chromosome 5 open reading frame 52##AK302162|SOX30|11063|SRY (sex determining region Y)-box 30##AB022083|SOX30|11063|SRY (sex determining region Y)-box 30##AB022441|SOX30|11063|SRY (sex determining region Y)-box 30##AK308329|SOX30|11063|SRY (sex determining region Y)-box 30##BC033492|SOX30|11063|SRY (sex determining region Y)-box 30##NM_007017|SOX30|11063|SRY (sex determining region Y)-box 30##NM_178424|SOX30|11063|SRY (sex determining region Y)-box 30##AY463216|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##NM_017872|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK000553|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK223119|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK304590|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC023521|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AL136669|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK021663|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##CR533503|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC001523|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC001852|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated	0.0	0.0	
chr5	35195113	35195254	reg1011912.p2	4.189	+	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	-76960	-	NM_031900	-146944	-	TSC_hg19_v1_chr5_+_34929697 AY177688 AY258422 BC065745 NM_001012339 NM_194283	-265491	+	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	35394	-	NM_000949	35639	-	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	422826	+	NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##NM_031900|AGXT2|64902|alanine--glyoxylate aminotransferase 2##AY177688|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##AY258422|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##BC065745|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_001012339|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##NM_194283|DNAJC21|134218|DnaJ (Hsp40) homolog, subfamily C, member 21##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##NM_000949|PRLR|5618|prolactin receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2	0.0	0.0	
chr1	161714026	161714206	reg1008303.p1	4.188	+	AY670683 AY670684 AY670685 AY670686 AY670687 NM_001002901 AY786314	-21661	+	AF531423 NM_001184866 NM_001184867 NM_001184870 NM_001184871 NM_001184872 NM_001184873 NM_032738	-37355	+	NM_001002273 NM_001002274 NM_001002275 NM_001190828 NM_004001 AF543826 M31933 X17653 AK308150 AB209585 BC062629 X52473 X62573 BC146678 M28696 M31934 BC031992 BC141826 U90941 AB590317 BC148273 CR407635 CU689254 DQ891344 DQ894525 U87560 U87561 U87562 U87563 U87564 U87565 U87566 U87567 U87568 U87569 U87570 U87571 U87572 U87573 U87574 U87575 U87576 U87577 M31935	-81124	+	TSC_hg19_v1_chr1_+_161719575 BC006286 AF119226 NM_007240 DQ892766 DQ896011 CU675333 BT006633	5450	+	NM_007348 TSC_hg19_v1_chr1_+_161736080 AB015856	21954	+	AF005887 AK290498 TSC_hg19_v1_chr1_+_161736109	21994	+	AY670683|FCRLB|127943|Fc receptor-like B##AY670684|FCRLB|127943|Fc receptor-like B##AY670685|FCRLB|127943|Fc receptor-like B##AY670686|FCRLB|127943|Fc receptor-like B##AY670687|FCRLB|127943|Fc receptor-like B##NM_001002901|FCRLB|127943|Fc receptor-like B##AY786314|FCRLB|127943|Fc receptor-like B##AF531423|FCRLA|84824|Fc receptor-like A##NM_001184866|FCRLA|84824|Fc receptor-like A##NM_001184867|FCRLA|84824|Fc receptor-like A##NM_001184870|FCRLA|84824|Fc receptor-like A##NM_001184871|FCRLA|84824|Fc receptor-like A##NM_001184872|FCRLA|84824|Fc receptor-like A##NM_001184873|FCRLA|84824|Fc receptor-like A##NM_032738|FCRLA|84824|Fc receptor-like A##NM_001002273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002274|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002275|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001190828|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_004001|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AF543826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31933|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X17653|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AK308150|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AB209585|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X52473|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X62573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC146678|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M28696|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31934|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC031992|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC141826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U90941|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##BC148273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##CR407635|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##DQ891344|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##DQ894525|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87560|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87561|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87562|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87563|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87564|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87565|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87566|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87567|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87568|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87569|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87570|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87571|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87572|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87574|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87575|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87576|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87577|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31935|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC006286|DUSP12|11266|dual specificity phosphatase 12##AF119226|DUSP12|11266|dual specificity phosphatase 12##NM_007240|DUSP12|11266|dual specificity phosphatase 12##DQ892766|DUSP12|11266|dual specificity phosphatase 12##DQ896011|DUSP12|11266|dual specificity phosphatase 12##BT006633|DUSP12|11266|dual specificity phosphatase 12##NM_007348|ATF6|22926|activating transcription factor 6##AB015856|ATF6|22926|activating transcription factor 6##AF005887|ATF6|22926|activating transcription factor 6##AK290498|ATF6|22926|activating transcription factor 6	0.0	0.0	
chr1	32756284	32756391	reg1013438.p1	4.188	+	NM_001042771 BC013200 AK303073 U07236 CU680550 DQ891675 DQ894861 AB527809 AJ865079 AF228313	-16497	+	NM_005356 TSC_hg19_v1_chr1_+_32716847 AK098027 X05027 U23852 M36881 X13529	-39452	+	NM_032648 BC004269	-43512	+	AK225555 TSC_hg19_v1_chr1_+_32757704 AK296308 AK313061	1366	+	D50405 NM_004964 TSC_hg19_v1_chr1_+_32757707	1371	+	TSC_hg19_v1_chr1_+_32757740 BC000301 AK299792 AY627042 AB451297 AB451430 AB463736 CR541717 CU674144 DQ891398 DQ894577	1403	+	NM_001042771|LCK|3932|lymphocyte-specific protein tyrosine kinase##BC013200|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK303073|LCK|3932|lymphocyte-specific protein tyrosine kinase##U07236|LCK|3932|lymphocyte-specific protein tyrosine kinase##DQ891675|LCK|3932|lymphocyte-specific protein tyrosine kinase##DQ894861|LCK|3932|lymphocyte-specific protein tyrosine kinase##AJ865079|LCK|3932|lymphocyte-specific protein tyrosine kinase##AF228313|LCK|3932|lymphocyte-specific protein tyrosine kinase##NM_005356|LCK|3932|lymphocyte-specific protein tyrosine kinase##AK098027|LCK|3932|lymphocyte-specific protein tyrosine kinase##X05027|LCK|3932|lymphocyte-specific protein tyrosine kinase##U23852|LCK|3932|lymphocyte-specific protein tyrosine kinase##M36881|LCK|3932|lymphocyte-specific protein tyrosine kinase##X13529|LCK|3932|lymphocyte-specific protein tyrosine kinase##NM_032648|FAM167B|84734|family with sequence similarity 167, member B##BC004269|FAM167B|84734|family with sequence similarity 167, member B##AK225555|HDAC1|3065|histone deacetylase 1##AK296308|HDAC1|3065|histone deacetylase 1##AK313061|HDAC1|3065|histone deacetylase 1##D50405|HDAC1|3065|histone deacetylase 1##NM_004964|HDAC1|3065|histone deacetylase 1##BC000301|HDAC1|3065|histone deacetylase 1##AK299792|HDAC1|3065|histone deacetylase 1##AY627042|HDAC1|3065|histone deacetylase 1##AB451297|HDAC1|3065|histone deacetylase 1##AB451430|HDAC1|3065|histone deacetylase 1##CR541717|HDAC1|3065|histone deacetylase 1##DQ891398|HDAC1|3065|histone deacetylase 1##DQ894577|HDAC1|3065|histone deacetylase 1	0.996329	0.360659	CTCF.p2:-9:0.361	denovo_WM_7:26:0.883
chr17	47436042	47436151	reg1011034.p2	4.188	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-127953	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-148019	+	NM_001198754	-148161	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	3484	-	BC095460 TSC_hg19_v1_chr17_-_47492215	56119	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	56152	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	0.0	0.0	
chr22	30994751	30994840	reg1010699.p2	4.188	+	TSC_hg19_v1_chr22_-_30987884 BC032489 U78310 AK315518 NM_001243225 NM_014303	-6899	-	AB385086 AB451380 CU013139 CU013427 CU689394 TSC_hg19_v1_chr22_-_30987858 CR456539	-6954	-	D88667 NM_004861	-33920	-	NM_000355 NM_001184726 TSC_hg19_v1_chr22_+_31003162 AK313711 BC011239 BC001176 L02647 L02648 AK225445 CR456591 M60396 AB528246 CU013191 CU013479 DQ892811 DQ896057 CU679894	8398	+	TSC_hg19_v1_chr22_+_31031763 NM_001001479 BC040191	36941	+	AF533017 TSC_hg19_v1_chr22_-_31063662	68843	-	BC032489|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##U78310|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##AK315518|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##NM_001243225|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##NM_014303|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##AB451380|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##CU013139|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##CU013427|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##CR456539|PES1|23481|pescadillo homolog 1, containing BRCT domain (zebrafish)##D88667|GAL3ST1|9514|galactose-3-O-sulfotransferase 1##NM_004861|GAL3ST1|9514|galactose-3-O-sulfotransferase 1##NM_000355|TCN2|6948|transcobalamin II##NM_001184726|TCN2|6948|transcobalamin II##AK313711|TCN2|6948|transcobalamin II##BC011239|TCN2|6948|transcobalamin II##BC001176|TCN2|6948|transcobalamin II##L02647|TCN2|6948|transcobalamin II##L02648|TCN2|6948|transcobalamin II##AK225445|TCN2|6948|transcobalamin II##CR456591|TCN2|6948|transcobalamin II##M60396|TCN2|6948|transcobalamin II##CU013191|TCN2|6948|transcobalamin II##CU013479|TCN2|6948|transcobalamin II##DQ892811|TCN2|6948|transcobalamin II##DQ896057|TCN2|6948|transcobalamin II##NM_001001479|SLC35E4|339665|solute carrier family 35, member E4##BC040191|SLC35E4|339665|solute carrier family 35, member E4##AF533017|DUSP18|150290|dual specificity phosphatase 18	1.978895	0.0	denovo_WM_7:83:0.864	denovo_WM_7:98:0.864
chr3	97691342	97691433	reg1008102.p1	4.188	+	TSC_hg19_v1_chr3_-_97691261 NM_001042533 NM_032778 AK027299 DQ453796 AB083192 NM_153182	-110	-	TSC_hg19_v1_chr3_+_97540854 AK296966	-150517	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	-207787	+	CR749263 NM_001105580	62760	-	AB528856 NM_054106	114629	+	AB528772 NM_001005338	160153	+	NM_001042533|MINA|84864|MYC induced nuclear antigen##NM_032778|MINA|84864|MYC induced nuclear antigen##AK027299|MINA|84864|MYC induced nuclear antigen##DQ453796|MINA|84864|MYC induced nuclear antigen##AB083192|MINA|84864|MYC induced nuclear antigen##NM_153182|MINA|84864|MYC induced nuclear antigen##AK296966|CRYBG3|131544|beta-gamma crystallin domain containing 3##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6##CR749263|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3##NM_001105580|GABRR3|200959|gamma-aminobutyric acid (GABA) receptor, rho 3##NM_054106|OR5AC2|81050|olfactory receptor, family 5, subfamily AC, member 2##NM_001005338|OR5H1|26341|olfactory receptor, family 5, subfamily H, member 1	1.999918	0.0	denovo_WM_7:75:0.253	denovo_WM_7:76:0.212	denovo_WM_7:94:0.221	denovo_WM_7:95:0.264
chr10	112262353	112262476	reg1014146.p1	4.187	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	-4663	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-197714	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-197821	-	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	65078	+	AF067163 TSC_hg19_v1_chr10_+_112344155	81701	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	141715	+	NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20	1.571201	0.0	denovo_WM_7:-42:0.899	denovo_WM_7:53:0.655
chr10	32203412	32203531	reg1008588.p1	4.187	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-593382	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-595338	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-595514	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	14253	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	14314	-	TSC_hg19_v1_chr10_-_32344938 AB462413	141461	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.843909	0.0	denovo_WM_7:-88:0.284	denovo_WM_7:-89:0.440
chr10	43916115	43916259	reg1014670.p2	4.187	+	TSC_hg19_v1_chr10_-_43904631 BC015580 BC004254 AK296696 NM_004966 NM_001098204	-11541	-	TSC_hg19_v1_chr10_-_43904306 AK001364 NM_001098205	-11869	-	TSC_hg19_v1_chr10_-_43903224 BC016736 NM_001098206	-12928	-	AK302442 TSC_hg19_v1_chr10_+_43932667	16433	+	NM_005674 X82125	147719	-	BC026030 X82128 AK292013 NM_001099282 NM_001099283 NM_001099284	153849	-	BC015580|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC004254|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK296696|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_004966|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098204|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK001364|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098205|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC016736|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098206|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK302442|ZNF487P|642819|zinc finger protein 487, pseudogene##NM_005674|ZNF239|8187|zinc finger protein 239##X82125|ZNF239|8187|zinc finger protein 239##BC026030|ZNF239|8187|zinc finger protein 239##X82128|ZNF239|8187|zinc finger protein 239##AK292013|ZNF239|8187|zinc finger protein 239##NM_001099282|ZNF239|8187|zinc finger protein 239##NM_001099283|ZNF239|8187|zinc finger protein 239##NM_001099284|ZNF239|8187|zinc finger protein 239	0.248997	0.565303	CTCF.p2:39:0.565	denovo_WM_7:71:0.213
chr16	14006863	14006984	reg1013846.p1	4.187	+	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	-1011455	+	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	-1109204	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	-1109272	-	TSC_hg19_v1_chr16_+_14014030 BC142631 NM_005236 AK289726 BC113107 U64315 BC020741 AK308341	7108	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	158163	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	273595	+	AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC142631|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##NM_005236|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK289726|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##U64315|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##BC020741|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK308341|ERCC4|2072|excision repair cross-complementing rodent repair deficiency, complementation group 4##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2	0.154848	0.0	
chr17	62355773	62355953	reg1010528.p2	4.187	+	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	-15209	-	TSC_hg19_v1_chr17_-_62340645 BC036672	-15216	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	-15277	-	AF177201 CU679261 TSC_hg19_v1_chr17_-_62493178 AK307801 BC009194 NM_007215	137274	-	AB451257 AB451382 BT006943 DQ890687 DQ893774 AB384902 TSC_hg19_v1_chr17_-_62502320	146420	-	TSC_hg19_v1_chr17_-_62502393 BC016027 AB209919	146519	-	BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##AF177201|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AK307801|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##BC009194|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##NM_007215|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AB451257|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB451382|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BT006943|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ890687|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ893774|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BC016027|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB209919|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.0	0.0	
chr4	36843954	36844080	reg1000171.p2	4.187	+	BC157885 NM_001170700	-558374	+	AK131492 NM_001136536 AK304357 AK316523	-560771	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	-597980	-	NM_001144990	402672	+	NM_001104629 BC037906	611558	+	AK001879 NM_018302 AK225192	741852	+	BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_001144990|KIAA1239|57495|KIAA1239##NM_001104629|C4orf19|55286|chromosome 4 open reading frame 19##BC037906|C4orf19|55286|chromosome 4 open reading frame 19##AK001879|C4orf19|55286|chromosome 4 open reading frame 19##NM_018302|C4orf19|55286|chromosome 4 open reading frame 19##AK225192|C4orf19|55286|chromosome 4 open reading frame 19	0.46708	0.0	denovo_WM_7:42:0.271
chr5	10630759	10630862	reg1002168.p1	4.187	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-66368	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-188658	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-188807	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	130449	-	TSC_hg19_v1_chr5_-_10761341 BC002726	130532	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	130589	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.0	0.0	
chr5	157288473	157288543	reg1001933.p2	4.187	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-2418	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-104128	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-117768	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	1237949	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	1238234	-	AK304228 NM_001199382	1346140	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.0	0.0	
chr8	145119617	145119691	reg1018828.p2	4.187	+	TSC_hg19_v1_chr8_-_145115617 BC150206 NM_017570 BC142672	-4046	-	TSC_hg19_v1_chr8_+_145086446 NM_001134374 NM_198572 BC050390 AB092352 AK301710 BC053547	-33129	+	AL157442 TSC_hg19_v1_chr8_+_145066892	-52765	+	TSC_hg19_v1_chr8_+_145133523 NM_019037 AF281133	13856	+	TSC_hg19_v1_chr8_+_145133604 AK000598 BC002777	13934	+	TSC_hg19_v1_chr8_+_145133620 AB528720	13971	+	BC150206|OPLAH|26873|5-oxoprolinase (ATP-hydrolysing)##NM_017570|OPLAH|26873|5-oxoprolinase (ATP-hydrolysing)##BC142672|OPLAH|26873|5-oxoprolinase (ATP-hydrolysing)##NM_001134374|SPATC1|375686|spermatogenesis and centriole associated 1##NM_198572|SPATC1|375686|spermatogenesis and centriole associated 1##BC050390|SPATC1|375686|spermatogenesis and centriole associated 1##AB092352|SPATC1|375686|spermatogenesis and centriole associated 1##AK301710|SPATC1|375686|spermatogenesis and centriole associated 1##BC053547|SPATC1|375686|spermatogenesis and centriole associated 1##AL157442|GRINA|2907|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)##NM_019037|EXOSC4|54512|exosome component 4##AF281133|EXOSC4|54512|exosome component 4##AK000598|EXOSC4|54512|exosome component 4##BC002777|EXOSC4|54512|exosome component 4	0.0	0.0	
chr8	65481512	65481646	reg1009767.p1	4.187	+	TSC_hg19_v1_chr8_+_64081201 AL831816 AK056219 BC037492 AL832335	-1400379	+	TSC_hg19_v1_chr8_+_64081179 NM_152758 BC052970 AK127574 AL832005 BX537996	-1400435	+	CU691280 U21938 TSC_hg19_v1_chr8_-_63998613 BC041784 D49488 BC058000 NM_000370	-1482952	-	NM_152414 AK293979	11279	+	TSC_hg19_v1_chr8_+_65493611 AK091333	12085	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	229700	-	AL831816|YTHDF3|253943|YTH domain family, member 3##AK056219|YTHDF3|253943|YTH domain family, member 3##BC037492|YTHDF3|253943|YTH domain family, member 3##AL832335|YTHDF3|253943|YTH domain family, member 3##NM_152758|YTHDF3|253943|YTH domain family, member 3##BC052970|YTHDF3|253943|YTH domain family, member 3##AK127574|YTHDF3|253943|YTH domain family, member 3##AL832005|YTHDF3|253943|YTH domain family, member 3##BX537996|YTHDF3|253943|YTH domain family, member 3##U21938|TTPA|7274|tocopherol (alpha) transfer protein##BC041784|TTPA|7274|tocopherol (alpha) transfer protein##D49488|TTPA|7274|tocopherol (alpha) transfer protein##BC058000|TTPA|7274|tocopherol (alpha) transfer protein##NM_000370|TTPA|7274|tocopherol (alpha) transfer protein##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1	0.026849	0.0	
chr10	22609935	22610115	reg1012301.p1	4.186	+	TSC_hg19_v1_chr10_+_22605316 NM_001204062 NM_012071 BX647275 AF201948 BC022898 AF078848 AK128789 AK313235 AK295109 AY542159	-4700	+	TSC_hg19_v1_chr10_+_22540999 AK094582	-69012	+	NM_001199938	-111114	-	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	140	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	24431	+	TSC_hg19_v1_chr10_+_22726003 AK295718	115974	+	NM_001204062|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##NM_012071|COMMD3|23412|COMM domain containing 3##BX647275|COMMD3|23412|COMM domain containing 3##AF201948|COMMD3|23412|COMM domain containing 3##BC022898|COMMD3|23412|COMM domain containing 3##AF078848|COMMD3|23412|COMM domain containing 3##AK128789|COMMD3|23412|COMM domain containing 3##AK313235|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##AY542159|COMMD3|23412|COMM domain containing 3##AK094582|LOC100130992|100130992|uncharacterized LOC100130992##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##AK295718|LOC100289455|100289455|uncharacterized LOC100289455	0.0	0.0	
chr1	245971111	245971291	reg1008862.p2	4.186	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-652893	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-837518	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-837571	+	AK024733 NM_022743	609510	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	699353	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	699407	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	1.739105	0.0	denovo_WM_7:-61:0.344	denovo_WM_7:-62:0.242	denovo_WM_7:-78:0.687
chr16	74634568	74634748	reg1014123.p1	4.186	+	AK074773 AY358373 AK293982 NM_001011880 AL833339 AF448856	-179318	-	TSC_hg19_v1_chr16_-_74402059 BC037579 AK096768	-232560	-	TSC_hg19_v1_chr16_-_74401811 AK124154	-232846	-	TSC_hg19_v1_chr16_-_74640996 BC040133 U64791 BC031836	6297	-	TSC_hg19_v1_chr16_-_74641004 AK027032 AK304156 U28811 BC060822	6346	-	TSC_hg19_v1_chr16_-_74641016 NM_001145666 NM_001145667 NM_012201	6369	-	AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##AY358373|CLEC18B|497190|C-type lectin domain family 18, member B##AK293982|CLEC18B|497190|C-type lectin domain family 18, member B##NM_001011880|CLEC18B|497190|C-type lectin domain family 18, member B##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##BC037579|LOC283922|283922|pyruvate dehydrogenase phosphatase regulatory subunit pseudogene##AK096768|LOC283922|283922|pyruvate dehydrogenase phosphatase regulatory subunit pseudogene##BC040133|GLG1|2734|golgi glycoprotein 1##U64791|GLG1|2734|golgi glycoprotein 1##BC031836|GLG1|2734|golgi glycoprotein 1##AK027032|GLG1|2734|golgi glycoprotein 1##AK304156|GLG1|2734|golgi glycoprotein 1##U28811|GLG1|2734|golgi glycoprotein 1##BC060822|GLG1|2734|golgi glycoprotein 1##NM_001145666|GLG1|2734|golgi glycoprotein 1##NM_001145667|GLG1|2734|golgi glycoprotein 1##NM_012201|GLG1|2734|golgi glycoprotein 1	1.965386	0.0	denovo_WM_7:-2:0.382	denovo_WM_7:-3:0.287	denovo_WM_7:-19:0.293	denovo_WM_7:-20:0.390
chr17	4469004	4469155	reg1013611.p1	4.186	+	CU687648 BC063111 AK129501 AK300648 AK296645 TSC_hg19_v1_chr17_-_4463871 AK074646 NM_001122890 NM_153338	-5228	-	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	-10405	-	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	-66843	+	NM_198501 AK124452 BC105050 BC112177	18245	+	BC110859 NM_001114974	18754	+	AB590843 M23892 BC029032 NM_001140 AK290309 AK296792 AK296904 AK312557	75879	-	BC063111|GGT6|124975|gamma-glutamyltransferase 6##AK129501|GGT6|124975|gamma-glutamyltransferase 6##AK300648|GGT6|124975|gamma-glutamyltransferase 6##AK296645|GGT6|124975|gamma-glutamyltransferase 6##AK074646|GGT6|124975|gamma-glutamyltransferase 6##NM_001122890|GGT6|124975|gamma-glutamyltransferase 6##NM_153338|GGT6|124975|gamma-glutamyltransferase 6##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##NM_198501|SMTNL2|342527|smoothelin-like 2##AK124452|SMTNL2|342527|smoothelin-like 2##BC105050|SMTNL2|342527|smoothelin-like 2##BC112177|SMTNL2|342527|smoothelin-like 2##BC110859|SMTNL2|342527|smoothelin-like 2##NM_001114974|SMTNL2|342527|smoothelin-like 2##M23892|ALOX15|246|arachidonate 15-lipoxygenase##BC029032|ALOX15|246|arachidonate 15-lipoxygenase##NM_001140|ALOX15|246|arachidonate 15-lipoxygenase##AK290309|ALOX15|246|arachidonate 15-lipoxygenase##AK296792|ALOX15|246|arachidonate 15-lipoxygenase##AK296904|ALOX15|246|arachidonate 15-lipoxygenase##AK312557|ALOX15|246|arachidonate 15-lipoxygenase	0.0	0.027274	
chrX	9965839	9965971	reg1014052.p1	4.186	+	NM_001195081	-30508	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-211362	+	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	-211425	+	BC098455 NM_015691	17888	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	159149	+	AF041210 AB384764 AY539988 AY539994 AY540022 AY540023 EU446510 NM_001193278 NM_001193279 NM_001193280 NM_001193281	569654	-	NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC140866|SHROOM2|357|shroom family member 2##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4##AF041210|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539988|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY539994|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540022|MID1|4281|midline 1 (Opitz/BBB syndrome)##AY540023|MID1|4281|midline 1 (Opitz/BBB syndrome)##EU446510|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193278|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193279|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193280|MID1|4281|midline 1 (Opitz/BBB syndrome)##NM_001193281|MID1|4281|midline 1 (Opitz/BBB syndrome)	0.02116	0.0	
chr1	180600190	180600370	reg1016224.p1	4.185	+	TSC_hg19_v1_chr1_-_180471976 AK314112 NM_032360	-128316	-	NM_033343 AF179849	-400844	+	TSC_hg19_v1_chr1_+_180124047 AB384905	-476224	+	TSC_hg19_v1_chr1_+_180601151 BC028576 NM_001135669 NM_004736	857	+	AK309750 TSC_hg19_v1_chr1_+_180601157	879	+	TSC_hg19_v1_chr1_+_180601171 BC041142 AF089744	888	+	AK314112|ACBD6|84320|acyl-CoA binding domain containing 6##NM_032360|ACBD6|84320|acyl-CoA binding domain containing 6##NM_033343|LHX4|89884|LIM homeobox 4##AF179849|LHX4|89884|LIM homeobox 4##BC028576|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##NM_001135669|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##NM_004736|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##AK309750|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##BC041142|XPR1|9213|xenotropic and polytropic retrovirus receptor 1##AF089744|XPR1|9213|xenotropic and polytropic retrovirus receptor 1	0.075082	0.0	
chr13	49875654	49875834	reg1009309.p2	4.185	+	NM_001193478 NM_030911 TSC_hg19_v1_chr13_+_49822076 BC022801 BC092434 AK312835 BC032889 BC070238 AK297400 BC009562 AY027525 BC048092 BC125202 BC125203	-53655	+	AB463896 AY603964 NM_001507	-81272	+	TSC_hg19_v1_chr13_+_49684452 AK302415 AJ749707 NM_014923 AB023187 BC107793	-191288	+	NM_030925	99990	-	TSC_hg19_v1_chr13_-_50018201 AY211923 AY288977 BX647518 NM_001079670	142437	-	TSC_hg19_v1_chr13_+_50018457 NM_031915 AK308220 AF334407	142726	+	NM_001193478|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##NM_030911|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC022801|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC092434|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK312835|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC032889|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC070238|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK297400|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC009562|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY027525|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC048092|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125202|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125203|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY603964|MLNR|2862|motilin receptor##NM_001507|MLNR|2862|motilin receptor##AK302415|FNDC3A|22862|fibronectin type III domain containing 3A##AJ749707|FNDC3A|22862|fibronectin type III domain containing 3A##NM_014923|FNDC3A|22862|fibronectin type III domain containing 3A##AB023187|FNDC3A|22862|fibronectin type III domain containing 3A##BC107793|FNDC3A|22862|fibronectin type III domain containing 3A##NM_030925|CAB39L|81617|calcium binding protein 39-like##AY211923|CAB39L|81617|calcium binding protein 39-like##AY288977|CAB39L|81617|calcium binding protein 39-like##BX647518|CAB39L|81617|calcium binding protein 39-like##NM_001079670|CAB39L|81617|calcium binding protein 39-like##NM_031915|SETDB2|83852|SET domain, bifurcated 2##AK308220|SETDB2|83852|SET domain, bifurcated 2##AF334407|SETDB2|83852|SET domain, bifurcated 2	0.998414	0.0	denovo_WM_7:12:0.457	denovo_WM_7:13:0.457
chr18	49288946	49289027	reg1009568.p2	4.185	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-564946	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-565274	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-565760	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	577555	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	578127	+	TSC_hg19_v1_chr18_-_51690988 AL110266	2402006	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	0.990092	0.0	denovo_WM_7:56:0.905
chr5	32526961	32527141	reg1014732.p1	4.185	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-82115	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-82273	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-123698	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	58605	+	NM_001204376 AK300094 AK308301	183699	+	AK290870 NM_000908 NM_001204375 M59305	184437	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	1.845119	0.0	denovo_WM_7:-38:0.435	denovo_WM_7:-39:0.435	denovo_WM_7:-68:0.514	denovo_WM_7:-69:0.243
chr6	151336222	151336402	reg1015977.p1	4.185	+	TSC_hg19_v1_chr6_+_151187310 AK315378 NM_001242768	-148923	+	TSC_hg19_v1_chr6_+_151187064 AL117452	-149211	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	-149391	+	TSC_hg19_v1_chr6_+_151561133 BC047728 NM_005100	224802	+	U81607 TSC_hg19_v1_chr6_+_151561544 AB210003 BC046095 AK307578	225216	+	TSC_hg19_v1_chr6_+_151561578 BC006094	225269	+	AK315378|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242768|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC047728|AKAP12|9590|A kinase (PRKA) anchor protein 12##NM_005100|AKAP12|9590|A kinase (PRKA) anchor protein 12##U81607|AKAP12|9590|A kinase (PRKA) anchor protein 12##AB210003|AKAP12|9590|A kinase (PRKA) anchor protein 12##BC046095|AKAP12|9590|A kinase (PRKA) anchor protein 12##AK307578|AKAP12|9590|A kinase (PRKA) anchor protein 12	0.9999	0.0	
chr7	158406460	158406552	reg1009789.p2	4.185	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	-26053	-	TSC_hg19_v1_chr7_+_157647233 BC034557	-759232	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-1276795	+	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	90971	-	TSC_hg19_v1_chr7_-_158611303 AK126214	204864	-	TSC_hg19_v1_chr7_-_158622198 AB033054	215685	-	DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK126214|ESYT2|57488|extended synaptotagmin-like protein 2##AB033054|ESYT2|57488|extended synaptotagmin-like protein 2	0.0	0.0	
chrX	19904076	19904226	reg1015786.p2	4.185	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-86239	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-86276	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-215095	-	TSC_hg19_v1_chrX_-_19905450 AY542305	1312	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	1481	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	1553	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chr10	122728929	122729029	reg1011667.p1	4.184	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	-118084	+	NM_018117 TSC_hg19_v1_chr10_+_122610771	-118251	+	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	-512340	+	AB084153 EF057068 EU826598 EU826599 EU826600 EU826601 AB587574 M55614 Z71929 X56191 NM_001144913 NM_001144914	624426	-	AK308621 NM_001144916	624792	-	AK294026 NM_001144915	627179	-	BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11##NM_018117|WDR11|55717|WD repeat domain 11##NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AB084153|FGFR2|2263|fibroblast growth factor receptor 2##EF057068|FGFR2|2263|fibroblast growth factor receptor 2##EU826598|FGFR2|2263|fibroblast growth factor receptor 2##EU826599|FGFR2|2263|fibroblast growth factor receptor 2##EU826600|FGFR2|2263|fibroblast growth factor receptor 2##EU826601|FGFR2|2263|fibroblast growth factor receptor 2##M55614|FGFR2|2263|fibroblast growth factor receptor 2##Z71929|FGFR2|2263|fibroblast growth factor receptor 2##X56191|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144913|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144914|FGFR2|2263|fibroblast growth factor receptor 2##AK308621|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144916|FGFR2|2263|fibroblast growth factor receptor 2##AK294026|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144915|FGFR2|2263|fibroblast growth factor receptor 2	0.0	0.0	
chr15	93168949	93169129	reg1010174.p2	4.184	+	AK057393 NM_153040	-154133	+	TSC_hg19_v1_chr15_+_92937110 NM_006011 AK313924 BC069584 BC096202 BC096203 BC096204 BC096205 U82762 U33551	-231840	+	TSC_hg19_v1_chr15_+_92397563 AK097797 AK310306	-771472	+	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	29840	-	BC110328 TSC_hg19_v1_chr15_-_93277463	108350	-	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	274447	+	AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##NM_006011|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK313924|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC069584|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096202|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096203|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096204|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096205|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U82762|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U33551|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK097797|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AK310306|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##BC110328|FAM174B|400451|family with sequence similarity 174, member B##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2	0.0	0.0	
chr19	13388054	13388234	reg1001399.p1	4.184	+	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-123964	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-126852	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-127005	-	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	229032	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	454435	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	470575	+	BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130	0.0	0.999041	CTCF.p2:13:0.999
chr6	155238182	155238281	reg1015472.p2	4.184	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-183406	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-183677	+	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	-183706	+	NM_012454	173191	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	299897	+	BC020838 NM_001001346	346915	+	AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20	1.004921	0.0	
chr8	6604255	6604349	reg1013718.p2	4.184	+	TSC_hg19_v1_chr8_+_6566162 AL136587 AB528060 AM392899 AM393058 DQ893436 DQ896747 AK002072 AK310545 BC068519	-38119	+	TSC_hg19_v1_chr8_+_6565916 AF375789 BC023550	-38362	+	TSC_hg19_v1_chr8_+_6565896 NM_018361 BC080537	-38411	+	AY534243 AY358489 AY534242 NM_207411	88790	-	BC033298 BC047677 X92744 U73945 NM_005218	131181	-	M98331 BC093951 BC093953 BC069667 BC069710 BC069728 BC069769 NM_001926	179283	-	AL136587|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM392899|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM393058|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ893436|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ896747|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK002072|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK310545|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC068519|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AF375789|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC023550|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##NM_018361|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC080537|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AY534243|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##AY358489|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##AY534242|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##NM_207411|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##BC033298|DEFB1|1672|defensin, beta 1##BC047677|DEFB1|1672|defensin, beta 1##X92744|DEFB1|1672|defensin, beta 1##U73945|DEFB1|1672|defensin, beta 1##NM_005218|DEFB1|1672|defensin, beta 1##M98331|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC093951|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC093953|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069667|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069710|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069728|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069769|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##NM_001926|DEFA6|1671|defensin, alpha 6, Paneth cell-specific	0.0	0.0	
chr11	108661441	108661543	reg1016013.p1	4.183	+	TSC_hg19_v1_chr11_+_108535795 AK296752 BC091521 AB040537 NM_004398 U28042 AK315216 BC093654 BC093656 AB209884 BC064921 BC049217	-125678	+	BC113119 BC117701 TSC_hg19_v1_chr11_-_108464372 AY099469 NM_015065 AB014524	-197088	-	TSC_hg19_v1_chr11_-_108369112 AK313534 AF533708 BC036526 NM_153705	-292297	-	TSC_hg19_v1_chr11_+_109292850 AK303693 NM_207645	631351	+	BC068577 TSC_hg19_v1_chr11_+_109292911 BC035798	631407	+	AK095101 TSC_hg19_v1_chr11_+_109963524	1302036	+	AK296752|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC091521|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB040537|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##NM_004398|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##U28042|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK315216|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093654|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093656|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB209884|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC064921|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC049217|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC113119|EXPH5|23086|exophilin 5##BC117701|EXPH5|23086|exophilin 5##AY099469|EXPH5|23086|exophilin 5##NM_015065|EXPH5|23086|exophilin 5##AB014524|EXPH5|23086|exophilin 5##AK313534|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##AF533708|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC036526|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##NM_153705|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##AK303693|C11orf87|399947|chromosome 11 open reading frame 87##NM_207645|C11orf87|399947|chromosome 11 open reading frame 87##BC068577|C11orf87|399947|chromosome 11 open reading frame 87##BC035798|C11orf87|399947|chromosome 11 open reading frame 87##AK095101|ZC3H12C|85463|zinc finger CCCH-type containing 12C	0.992123	0.0	denovo_WM_7:0:0.753
chr1	197117528	197117626	reg1015104.p1	4.183	+	AF509326 AY099892 AY367065 AY971955 AY971956 AY971957 BC015396 TSC_hg19_v1_chr1_-_197115800 AK226178 AK125107 NM_001206846 NM_018136	-1883	-	M14057 AB527321 AK290560 NM_001994	-81204	-	AK314026 NM_030787 BC026282 AF295327 BC111773 AB590626	-170848	+	BC132818 BC136600 AK128549 AY163816 NM_194314	52076	-	NM_001193640 NM_201253 AK299368 AK289733 AK307844 AB208923 AF154671 AY043324 AY043325 BC136271 BC143726 AJ748821	119860	+	AK000061 TSC_hg19_v1_chr1_-_197552357	434755	-	AF509326|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY099892|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY367065|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971955|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971956|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AY971957|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##BC015396|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK226178|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##AK125107|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_001206846|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##NM_018136|ASPM|259266|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)##M14057|F13B|2165|coagulation factor XIII, B polypeptide##AK290560|F13B|2165|coagulation factor XIII, B polypeptide##NM_001994|F13B|2165|coagulation factor XIII, B polypeptide##AK314026|CFHR5|81494|complement factor H-related 5##NM_030787|CFHR5|81494|complement factor H-related 5##BC026282|CFHR5|81494|complement factor H-related 5##AF295327|CFHR5|81494|complement factor H-related 5##BC111773|CFHR5|81494|complement factor H-related 5##BC132818|ZBTB41|360023|zinc finger and BTB domain containing 41##BC136600|ZBTB41|360023|zinc finger and BTB domain containing 41##AK128549|ZBTB41|360023|zinc finger and BTB domain containing 41##AY163816|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_194314|ZBTB41|360023|zinc finger and BTB domain containing 41##NM_001193640|CRB1|23418|crumbs homolog 1 (Drosophila)##NM_201253|CRB1|23418|crumbs homolog 1 (Drosophila)##AK299368|CRB1|23418|crumbs homolog 1 (Drosophila)##AK289733|CRB1|23418|crumbs homolog 1 (Drosophila)##AK307844|CRB1|23418|crumbs homolog 1 (Drosophila)##AB208923|CRB1|23418|crumbs homolog 1 (Drosophila)##AF154671|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043324|CRB1|23418|crumbs homolog 1 (Drosophila)##AY043325|CRB1|23418|crumbs homolog 1 (Drosophila)##BC136271|CRB1|23418|crumbs homolog 1 (Drosophila)##BC143726|CRB1|23418|crumbs homolog 1 (Drosophila)##AJ748821|CRB1|23418|crumbs homolog 1 (Drosophila)##AK000061|DENND1B|163486|DENN/MADD domain containing 1B	1.977285	0.0	denovo_WM_7:-63:0.901
chr12	27430860	27431038	reg1011120.p2	4.183	+	TSC_hg19_v1_chr12_+_27397225 AK304755	-33724	+	TSC_hg19_v1_chr12_+_27397187 AK291055	-33762	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	-33825	+	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	54930	+	BC043511 TSC_hg19_v1_chr12_-_27599649	168655	-	NM_001145010	188793	+	AK304755|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70	0.0	0.0	
chr14	103224630	103224769	reg1015112.p2	4.183	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-165538	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-165701	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-248585	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	19120	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	19201	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	164299	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.885333	0.0	denovo_WM_7:98:0.730
chr3	141108231	141108347	reg1013851.p2	4.183	+	AK311479 TSC_hg19_v1_chr3_+_141105293	-3001	+	TSC_hg19_v1_chr3_+_141087345 AK311501	-20932	+	BC015444 NM_001080412 TSC_hg19_v1_chr3_+_141043057	-65233	+	TSC_hg19_v1_chr3_+_141205882 AK292016 AK301015 AF115573 D78155 D82880 NM_006506	97582	+	TSC_hg19_v1_chr3_+_141457045 NM_001201370 NM_014245 NM_183237	348780	+	TSC_hg19_v1_chr3_+_141457129 AK311982	348831	+	AK311501|ZBTB38|253461|zinc finger and BTB domain containing 38##BC015444|ZBTB38|253461|zinc finger and BTB domain containing 38##NM_001080412|ZBTB38|253461|zinc finger and BTB domain containing 38##AK292016|RASA2|5922|RAS p21 protein activator 2##AK301015|RASA2|5922|RAS p21 protein activator 2##AF115573|RASA2|5922|RAS p21 protein activator 2##D78155|RASA2|5922|RAS p21 protein activator 2##D82880|RASA2|5922|RAS p21 protein activator 2##NM_006506|RASA2|5922|RAS p21 protein activator 2##NM_001201370|RNF7|9616|ring finger protein 7##NM_014245|RNF7|9616|ring finger protein 7##NM_183237|RNF7|9616|ring finger protein 7##AK311982|RNF7|9616|ring finger protein 7	0.997814	0.0	denovo_WM_7:10:0.238	denovo_WM_7:11:0.238	denovo_WM_7:12:0.238	denovo_WM_7:13:0.238
chr4	191044158	191044224	reg1014174.p2	4.183	+	NM_033178 NM_001127386 NM_001127388 NM_001127389 NM_001164467 NM_001177376 NM_012147	-32294	+	NM_001127386 NM_001127388 NM_001127389 NM_001164467 NM_012147	-35591	+	NM_033178 NM_001127386 NM_001127388 NM_001127389 NM_001164467 NM_001177376 NM_012147	-38887	+	None	None	None	None	None	None	None	None	None	NM_033178|DUX4|22947|double homeobox 4##NM_001127386|DUX4L2|728410|double homeobox 4 like 2##NM_001127388|DUX4L6|653544|double homeobox 4 like 6##NM_001127389|DUX4L5|653545|double homeobox 4 like 5##NM_001164467|DUX4L3|653548|double homeobox 4 like 3##NM_001177376|DUX4L4|441056|double homeobox 4 like 4##NM_012147|DUX2|26583|double homeobox 2##NM_001127386|DUX4L2|728410|double homeobox 4 like 2##NM_001127388|DUX4L6|653544|double homeobox 4 like 6##NM_001127389|DUX4L5|653545|double homeobox 4 like 5##NM_001164467|DUX4L3|653548|double homeobox 4 like 3##NM_012147|DUX2|26583|double homeobox 2##NM_033178|DUX4|22947|double homeobox 4##NM_001127386|DUX4L2|728410|double homeobox 4 like 2##NM_001127388|DUX4L6|653544|double homeobox 4 like 6##NM_001127389|DUX4L5|653545|double homeobox 4 like 5##NM_001164467|DUX4L3|653548|double homeobox 4 like 3##NM_001177376|DUX4L4|441056|double homeobox 4 like 4##NM_012147|DUX2|26583|double homeobox 2	0.0	0.0	
chr7	30323642	30323760	reg1004475.p1	4.183	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	-149119	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-255410	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-255700	+	AF513707 NM_147128	221	+	TSC_hg19_v1_chr7_+_30324515 AF527533	848	+	TSC_hg19_v1_chr7_+_30324634 AY054122	955	+	NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AY054122|ZNRF2|223082|zinc and ring finger 2	0.962448	0.0	
chr8	102557602	102557780	reg1010567.p1	4.183	+	TSC_hg19_v1_chr8_+_102504840 AK023844 AK292853 BC069618 BC069633 BC069638 BC129822 BC129823	-52781	+	TSC_hg19_v1_chr8_+_102504667 NM_024915 AK296817 AK310221	-53026	+	TSC_hg19_v1_chr8_-_102217929 NM_001042510 NM_016096	-339737	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	245492	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	245509	-	NM_032041	245747	-	AK023844|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK292853|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069618|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069633|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069638|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129822|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129823|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_024915|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK296817|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK310221|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_001042510|ZNF706|51123|zinc finger protein 706##NM_016096|ZNF706|51123|zinc finger protein 706##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##NM_032041|NCALD|83988|neurocalcin delta	2.04649	0.0	denovo_WM_7:2:0.269	denovo_WM_7:3:0.714	denovo_WM_7:-11:0.667	denovo_WM_7:-12:0.305
chr12	50584859	50584999	reg1009344.p2	4.182	+	TSC_hg19_v1_chr12_-_50561153 AK298924	-23704	-	TSC_hg19_v1_chr12_-_50561112 AK026014	-23804	-	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	-23838	-	AK023649 AF157325 NM_001243775	10380	-	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	31527	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	92366	-	AK298924|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1	0.9996	0.0	
chr13	100695353	100695479	reg1014924.p2	4.182	+	TSC_hg19_v1_chr13_+_100634271 AF104902 AF193855	-61129	+	TSC_hg19_v1_chr13_+_100634037 NM_007129	-61396	+	TSC_hg19_v1_chr13_+_100633453 AK298232	-61961	+	NM_000282 NM_001127692 NM_001178004 TSC_hg19_v1_chr13_+_100741349 AF385926 AK298318 AK225288 AK225299 AK296771 AK315503 BC000140 X14608	45943	+	AK091974 BC001077 BC004360 NM_033110	490583	-	TSC_hg19_v1_chr13_-_101241029 AK095850 NM_001195087	545611	-	AF104902|ZIC2|7546|Zic family member 2##AF193855|ZIC2|7546|Zic family member 2##NM_007129|ZIC2|7546|Zic family member 2##NM_000282|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##NM_001127692|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##NM_001178004|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AF385926|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK298318|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK225288|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK225299|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK296771|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK315503|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##BC000140|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##X14608|PCCA|5095|propionyl CoA carboxylase, alpha polypeptide##AK091974|A2LD1|87769|AIG2-like domain 1##BC001077|A2LD1|87769|AIG2-like domain 1##BC004360|A2LD1|87769|AIG2-like domain 1##NM_033110|A2LD1|87769|AIG2-like domain 1##AK095850|A2LD1|87769|AIG2-like domain 1##NM_001195087|A2LD1|87769|AIG2-like domain 1	1.81658	0.037647	denovo_WM_7:36:0.510	denovo_WM_7:39:0.274	denovo_WM_7:52:0.223	denovo_WM_7:53:0.228	denovo_WM_7:54:0.501
chr13	32184614	32184735	reg1010488.p1	4.182	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	-410464	+	TSC_hg19_v1_chr13_+_31774111 NM_194318	-410571	+	AB003333 TSC_hg19_v1_chr13_-_31736042 BC037553 AB003334 D86956 BC018124 AK314576 AK293955 NM_006644 AK302294 AK303029 AK311464 AK307597	-448571	-	NM_001166058 NM_130806 AF453828 AB527208 AY899851	129039	+	TSC_hg19_v1_chr13_+_32420857 BC021729	236228	+	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	420767	+	AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##NM_194318|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB003333|HSPH1|10808|heat shock 105kDa/110kDa protein 1##BC037553|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AB003334|HSPH1|10808|heat shock 105kDa/110kDa protein 1##D86956|HSPH1|10808|heat shock 105kDa/110kDa protein 1##BC018124|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK314576|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK293955|HSPH1|10808|heat shock 105kDa/110kDa protein 1##NM_006644|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK302294|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK303029|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK311464|HSPH1|10808|heat shock 105kDa/110kDa protein 1##AK307597|HSPH1|10808|heat shock 105kDa/110kDa protein 1##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##BC021729|EEF1DP3|196549|eukaryotic translation elongation factor 1 delta pseudogene 3##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)	0.974287	0.0	denovo_WM_7:18:0.910
chr22	42353758	42353864	reg1011901.p2	4.182	+	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	-10688	-	EU035297 NM_001110215	-17589	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-31012	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	19097	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	40964	+	AB528190 CU013127 CU013415 DQ891874 DQ895062 CR456527 M38083 BC000095 TSC_hg19_v1_chr22_-_42466570	112624	-	CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like##CU013127|NAGA|4668|N-acetylgalactosaminidase, alpha-##CU013415|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ891874|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ895062|NAGA|4668|N-acetylgalactosaminidase, alpha-##CR456527|NAGA|4668|N-acetylgalactosaminidase, alpha-##M38083|NAGA|4668|N-acetylgalactosaminidase, alpha-##BC000095|NAGA|4668|N-acetylgalactosaminidase, alpha-	0.0	1.062124	CTCF.p2:14:0.994
chr3	179149870	179150019	reg1003931.p1	4.182	+	BC040557 NM_033540 TSC_hg19_v1_chr3_+_179065522 BC020661 AB043589 AK000700 AK314306	-84430	+	AB097862 AF003924 NM_016331	-108394	+	TSC_hg19_v1_chr3_+_179040818 BC026181	-109078	+	BC000873 TSC_hg19_v1_chr3_-_179169227 AK297174	19300	-	TSC_hg19_v1_chr3_-_179169361 AK001890 NM_021629	19421	-	TSC_hg19_v1_chr3_+_179280713 AB060168 NM_004301 NM_177989 NM_178042 AK098691 BC000949 AL136608 BC036371	130765	+	BC040557|MFN1|55669|mitofusin 1##NM_033540|MFN1|55669|mitofusin 1##BC020661|MFN1|55669|mitofusin 1##AB043589|MFN1|55669|mitofusin 1##AK000700|MFN1|55669|mitofusin 1##AK314306|MFN1|55669|mitofusin 1##AB097862|ZNF639|51193|zinc finger protein 639##AF003924|ZNF639|51193|zinc finger protein 639##NM_016331|ZNF639|51193|zinc finger protein 639##BC026181|ZNF639|51193|zinc finger protein 639##BC000873|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK297174|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AK001890|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##NM_021629|GNB4|59345|guanine nucleotide binding protein (G protein), beta polypeptide 4##AB060168|ACTL6A|86|actin-like 6A##NM_004301|ACTL6A|86|actin-like 6A##NM_177989|ACTL6A|86|actin-like 6A##NM_178042|ACTL6A|86|actin-like 6A##AK098691|ACTL6A|86|actin-like 6A##BC000949|ACTL6A|86|actin-like 6A##AL136608|ACTL6A|86|actin-like 6A##BC036371|ACTL6A|86|actin-like 6A	0.0	0.0	
chr10	22667537	22667717	reg1003225.p2	4.181	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-33171	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-57462	+	TSC_hg19_v1_chr10_+_22605316 NM_001204062 NM_012071 BX647275 AF201948 BC022898 AF078848 AK128789 AK313235 AK295109 AY542159	-62302	+	TSC_hg19_v1_chr10_+_22726003 AK295718	58372	+	AK294817 TSC_hg19_v1_chr10_-_23003038	335410	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	335863	-	NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##NM_001204062|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##NM_012071|COMMD3|23412|COMM domain containing 3##BX647275|COMMD3|23412|COMM domain containing 3##AF201948|COMMD3|23412|COMM domain containing 3##BC022898|COMMD3|23412|COMM domain containing 3##AF078848|COMMD3|23412|COMM domain containing 3##AK128789|COMMD3|23412|COMM domain containing 3##AK313235|COMMD3-BMI1|100532731|COMMD3-BMI1 readthrough##AY542159|COMMD3|23412|COMM domain containing 3##AK295718|LOC100289455|100289455|uncharacterized LOC100289455##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	0.92256	0.0	denovo_WM_7:56:0.240	denovo_WM_7:59:0.206
chr5	106631676	106631808	reg1011948.p2	4.181	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3733261	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4037285	+	BC024591 NM_015216 AB463068	-4166468	+	AK308672 NM_001962 U26403	374848	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1085388	-	BC063316 NM_001163315	1086056	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.648611	0.0	denovo_WM_7:-93:0.308
chr5	159933845	159933943	reg1012730.p1	4.181	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-84991	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-85040	+	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	-87789	-	AK025130 TSC_hg19_v1_chr5_-_160112393	178445	-	AB018258 AK295081 AK090832 AX746642 NM_025153	345237	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	1041232	-	BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK025130|ATP10B|23120|ATPase, class V, type 10B##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2	0.994533	0.0	denovo_WM_7:53:0.558
chr6	118511934	118512059	reg1017004.p1	4.181	+	BC028615 NM_001029858 BC114925	-283306	+	TSC_hg19_v1_chr6_+_117996664 AK126335 BC013026	-515330	+	BC110325 TSC_hg19_v1_chr6_+_117996661 BC063794	-515335	+	NM_002667 M63603 AK311799 BC005269	357469	+	BC048977 BC052778 NM_001042475 NM_206921 BC036553	461040	-	BC110835 BC064835 NM_001178035	519237	-	BC028615|SLC35F1|222553|solute carrier family 35, member F1##NM_001029858|SLC35F1|222553|solute carrier family 35, member F1##BC114925|SLC35F1|222553|solute carrier family 35, member F1##AK126335|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC013026|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC110325|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC063794|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##NM_002667|PLN|5350|phospholamban##M63603|PLN|5350|phospholamban##AK311799|PLN|5350|phospholamban##BC005269|PLN|5350|phospholamban##BC048977|CEP85L|387119|centrosomal protein 85kDa-like##BC052778|CEP85L|387119|centrosomal protein 85kDa-like##NM_001042475|CEP85L|387119|centrosomal protein 85kDa-like##NM_206921|CEP85L|387119|centrosomal protein 85kDa-like##BC036553|CEP85L|387119|centrosomal protein 85kDa-like##BC110835|CEP85L|387119|centrosomal protein 85kDa-like##BC064835|CEP85L|387119|centrosomal protein 85kDa-like##NM_001178035|CEP85L|387119|centrosomal protein 85kDa-like	0.0	0.0	
chr6	151045628	151045743	reg1013842.p2	4.181	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-124665	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-355527	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-581444	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	141147	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	141236	+	TSC_hg19_v1_chr6_+_151187064 AL117452	141416	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	1.96146	0.0	denovo_WM_7:6:0.422	denovo_WM_7:21:0.554
chr7	2481139	2481262	reg1003188.p1	4.181	+	TSC_hg19_v1_chr7_+_2443245 BC095492 BC002918 BC015954 AK223191 AK223211 AK313484 AF239822 AY358574	-37957	+	TSC_hg19_v1_chr7_+_2443191 NM_001243794 NM_001243795 NM_018641	-38020	+	TSC_hg19_v1_chr7_+_2394547 BC110865	-86653	+	AK096284 NM_001166355	70962	+	BC014851 NM_002304	76296	+	TSC_hg19_v1_chr7_+_2559407 NM_001040167 NM_001040168	78237	+	BC095492|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC002918|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC015954|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223191|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK223211|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AK313484|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AF239822|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##AY358574|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243794|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_001243795|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##NM_018641|CHST12|55501|carbohydrate (chondroitin 4) sulfotransferase 12##BC110865|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK096284|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001166355|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##BC014851|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_002304|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040167|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase##NM_001040168|LFNG|3955|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	0.0	0.0	
chr9	5624983	5625139	reg1013213.p1	4.181	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-114398	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-174554	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-187181	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	4066	+	BC036853 TSC_hg19_v1_chr9_-_5630098	5029	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	207890	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.04706	0.0	
chr11	65102516	65102658	reg1014282.p1	4.180	+	TSC_hg19_v1_chr11_+_65101347 BC014889 AK291944 U94585 AB463002 BT006718 DQ892397 DQ895612	-1236	+	NM_006268 TSC_hg19_v1_chr11_+_65101322 AK313408 AK300061 BX641135	-1303	+	NM_006779 TSC_hg19_v1_chr11_+_65082336 AF001436 AF163840 AK315444 BC075834	-20250	+	NM_145719	19694	+	BC036869 BX648573 NM_001077241 NM_182556	47537	-	NM_031904 TSC_hg19_v1_chr11_+_65154083 BC021094	51477	+	BC014889|DPF2|5977|D4, zinc and double PHD fingers family 2##AK291944|DPF2|5977|D4, zinc and double PHD fingers family 2##U94585|DPF2|5977|D4, zinc and double PHD fingers family 2##BT006718|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ892397|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ895612|DPF2|5977|D4, zinc and double PHD fingers family 2##NM_006268|DPF2|5977|D4, zinc and double PHD fingers family 2##AK313408|DPF2|5977|D4, zinc and double PHD fingers family 2##AK300061|DPF2|5977|D4, zinc and double PHD fingers family 2##BX641135|DPF2|5977|D4, zinc and double PHD fingers family 2##NM_006779|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##AF001436|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##AF163840|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##AK315444|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##BC075834|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##NM_145719|TIGD3|220359|tigger transposable element derived 3##BC036869|SLC25A45|283130|solute carrier family 25, member 45##BX648573|SLC25A45|283130|solute carrier family 25, member 45##NM_001077241|SLC25A45|283130|solute carrier family 25, member 45##NM_182556|SLC25A45|283130|solute carrier family 25, member 45##NM_031904|FRMD8|83786|FERM domain containing 8	0.988714	0.0	denovo_WM_7:-28:0.760
chr14	23289327	23289400	reg1004153.p2	4.180	+	Y18474 BX248291 AF092032 AJ130718 NM_001126106	-398	-	AB020532 BX161519 NM_001126105	-4305	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	-4731	-	TSC_hg19_v1_chr14_+_23299095 AK096946 NM_178336 NM_180982 NM_181304 NM_181305 NM_181306 NM_181307	9728	+	TSC_hg19_v1_chr14_+_23299104 AK292011 AK000450 BX248749 BC055381 BC068070	9747	+	NM_004995 AK312657 TSC_hg19_v1_chr14_+_23305800 AK291325 BC064803	16437	+	Y18474|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX248291|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AF092032|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AJ130718|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126106|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK096946|MRPL52|122704|mitochondrial ribosomal protein L52##NM_178336|MRPL52|122704|mitochondrial ribosomal protein L52##NM_180982|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181304|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181305|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181306|MRPL52|122704|mitochondrial ribosomal protein L52##NM_181307|MRPL52|122704|mitochondrial ribosomal protein L52##AK292011|MRPL52|122704|mitochondrial ribosomal protein L52##AK000450|MRPL52|122704|mitochondrial ribosomal protein L52##BX248749|MRPL52|122704|mitochondrial ribosomal protein L52##BC055381|MRPL52|122704|mitochondrial ribosomal protein L52##BC068070|MRPL52|122704|mitochondrial ribosomal protein L52##NM_004995|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)##AK312657|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)##AK291325|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)##BC064803|MMP14|4323|matrix metallopeptidase 14 (membrane-inserted)	0.0	0.0	
chr1	52670692	52670814	reg1013476.p1	4.180	+	AF130419 AF130420 NM_004799 NM_007323 NM_007324	-62708	+	AK027582 TSC_hg19_v1_chr1_+_52521975 BC022371 BC021004	-148755	+	BC070378 AK027750 TSC_hg19_v1_chr1_+_52521972	-148784	+	TSC_hg19_v1_chr1_-_52831829 BC039308 AK130874 NM_032449	161093	-	BC011539 AK303420 U43416 AK291909 U40152 TSC_hg19_v1_chr1_-_52870133 NM_001190818 NM_001190819 NM_004153	199347	-	TSC_hg19_v1_chr1_+_52870235 NM_032864 AK092038 AK315621 AX747327	199471	+	AF130419|ZFYVE9|9372|zinc finger, FYVE domain containing 9##AF130420|ZFYVE9|9372|zinc finger, FYVE domain containing 9##NM_004799|ZFYVE9|9372|zinc finger, FYVE domain containing 9##NM_007323|ZFYVE9|9372|zinc finger, FYVE domain containing 9##NM_007324|ZFYVE9|9372|zinc finger, FYVE domain containing 9##AK027582|BTF3L4|91408|basic transcription factor 3-like 4##BC022371|BTF3L4|91408|basic transcription factor 3-like 4##BC021004|BTF3L4|91408|basic transcription factor 3-like 4##BC070378|BTF3L4|91408|basic transcription factor 3-like 4##AK027750|BTF3L4|91408|basic transcription factor 3-like 4##BC039308|CC2D1B|200014|coiled-coil and C2 domain containing 1B##AK130874|CC2D1B|200014|coiled-coil and C2 domain containing 1B##NM_032449|CC2D1B|200014|coiled-coil and C2 domain containing 1B##BC011539|ORC1|4998|origin recognition complex, subunit 1##AK303420|ORC1|4998|origin recognition complex, subunit 1##U43416|ORC1|4998|origin recognition complex, subunit 1##AK291909|ORC1|4998|origin recognition complex, subunit 1##U40152|ORC1|4998|origin recognition complex, subunit 1##NM_001190818|ORC1|4998|origin recognition complex, subunit 1##NM_001190819|ORC1|4998|origin recognition complex, subunit 1##NM_004153|ORC1|4998|origin recognition complex, subunit 1##NM_032864|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##AK092038|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A##AK315621|PRPF38A|84950|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	0.997507	0.0	
chr19	10644279	10644413	reg1011706.p1	4.180	+	AK074661 NM_001166215	-15710	-	BC034703 AK094880 BC067781 NM_030760	-16228	-	TSC_hg19_v1_chr19_-_10625679 AB385542 DQ891290 DQ893341 DQ894474 DQ896661 AF331840 AF331841 AF331842	-18659	-	AK294676 TSC_hg19_v1_chr19_+_10654589	10234	+	TSC_hg19_v1_chr19_+_10654592 AK056210 AK314712 AK316454 BC068992 AK223383 BC007639 NM_032885 AJ312332 CU686689	10332	+	BC009303 TSC_hg19_v1_chr19_-_10676685 AL833189 AK300780	32320	-	AK074661|S1PR5|53637|sphingosine-1-phosphate receptor 5##NM_001166215|S1PR5|53637|sphingosine-1-phosphate receptor 5##BC034703|S1PR5|53637|sphingosine-1-phosphate receptor 5##AK094880|S1PR5|53637|sphingosine-1-phosphate receptor 5##BC067781|S1PR5|53637|sphingosine-1-phosphate receptor 5##NM_030760|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ891290|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ893341|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ894474|S1PR5|53637|sphingosine-1-phosphate receptor 5##DQ896661|S1PR5|53637|sphingosine-1-phosphate receptor 5##AF331840|S1PR5|53637|sphingosine-1-phosphate receptor 5##AF331841|S1PR5|53637|sphingosine-1-phosphate receptor 5##AF331842|S1PR5|53637|sphingosine-1-phosphate receptor 5##AK294676|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK056210|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK314712|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK316454|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##BC068992|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AK223383|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##BC007639|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##NM_032885|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##AJ312332|ATG4D|84971|ATG4 autophagy related 4 homolog D (S. cerevisiae)##BC009303|KRI1|65095|KRI1 homolog (S. cerevisiae)##AL833189|KRI1|65095|KRI1 homolog (S. cerevisiae)##AK300780|KRI1|65095|KRI1 homolog (S. cerevisiae)	0.99204	0.0	denovo_WM_7:-30:0.837
chr19	12992839	12992962	reg1001062.p2	4.180	+	AK075449 TSC_hg19_v1_chr19_-_12992251 AF047016 AB004574 AK297493 AF045937 AK315358 BC065209 AF060222 AK311145 NM_001375	-609	-	FJ752529 BT007047 BC010419 TSC_hg19_v1_chr19_-_12992222	-713	-	NM_014975 TSC_hg19_v1_chr19_+_12949305 AB023190 AK297553 AB384551	-43579	+	AB463820 BC033580 BC040000 U65404 NM_006563	5086	-	TSC_hg19_v1_chr19_+_13001973 AK098370 AK290407 AK298772 NM_000159 NM_013976 AK296446 BC002579 AK300841 AK309892 U69141 CU678052 BT006706 S77773	9164	+	TSC_hg19_v1_chr19_-_13030085 AK302373 NM_001105578	37184	-	AK075449|DNASE2|1777|deoxyribonuclease II, lysosomal##AF047016|DNASE2|1777|deoxyribonuclease II, lysosomal##AB004574|DNASE2|1777|deoxyribonuclease II, lysosomal##AK297493|DNASE2|1777|deoxyribonuclease II, lysosomal##AF045937|DNASE2|1777|deoxyribonuclease II, lysosomal##AK315358|DNASE2|1777|deoxyribonuclease II, lysosomal##BC065209|DNASE2|1777|deoxyribonuclease II, lysosomal##AF060222|DNASE2|1777|deoxyribonuclease II, lysosomal##AK311145|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_001375|DNASE2|1777|deoxyribonuclease II, lysosomal##FJ752529|DNASE2|1777|deoxyribonuclease II, lysosomal##BT007047|DNASE2|1777|deoxyribonuclease II, lysosomal##BC010419|DNASE2|1777|deoxyribonuclease II, lysosomal##NM_014975|MAST1|22983|microtubule associated serine/threonine kinase 1##AB023190|MAST1|22983|microtubule associated serine/threonine kinase 1##AK297553|MAST1|22983|microtubule associated serine/threonine kinase 1##BC033580|KLF1|10661|Kruppel-like factor 1 (erythroid)##BC040000|KLF1|10661|Kruppel-like factor 1 (erythroid)##U65404|KLF1|10661|Kruppel-like factor 1 (erythroid)##NM_006563|KLF1|10661|Kruppel-like factor 1 (erythroid)##AK098370|GCDH|2639|glutaryl-CoA dehydrogenase##AK290407|GCDH|2639|glutaryl-CoA dehydrogenase##AK298772|GCDH|2639|glutaryl-CoA dehydrogenase##NM_000159|GCDH|2639|glutaryl-CoA dehydrogenase##NM_013976|GCDH|2639|glutaryl-CoA dehydrogenase##AK296446|GCDH|2639|glutaryl-CoA dehydrogenase##BC002579|GCDH|2639|glutaryl-CoA dehydrogenase##AK300841|GCDH|2639|glutaryl-CoA dehydrogenase##AK309892|GCDH|2639|glutaryl-CoA dehydrogenase##U69141|GCDH|2639|glutaryl-CoA dehydrogenase##BT006706|GCDH|2639|glutaryl-CoA dehydrogenase##S77773|GCDH|2639|glutaryl-CoA dehydrogenase##AK302373|SYCE2|256126|synaptonemal complex central element protein 2##NM_001105578|SYCE2|256126|synaptonemal complex central element protein 2	1.976225	0.0	denovo_WM_7:52:0.775	denovo_WM_7:74:0.234	denovo_WM_7:75:0.234	denovo_WM_7:76:0.234	denovo_WM_7:77:0.234
chr19	36232550	36232670	reg1015680.p1	4.180	+	TSC_hg19_v1_chr19_+_36209125 AF186605	-23424	+	TSC_hg19_v1_chr19_+_36208923 AJ007041 NM_014727	-23680	+	AF130255 NM_014383	-28781	+	BC126481 BC126483 BC144205 AX775837 AK026226 NM_024660	720	-	AB528887 CU676860 DQ892422 DQ895636 BC062474 BC049208 AY569437 BC021186 TSC_hg19_v1_chr19_-_36236316 AK094213 AY461582 BC010865 AK311551 NM_001040425 NM_144987 AK303983	3706	-	TSC_hg19_v1_chr19_+_36236539 NM_172341 AF220053 BC009575 AK312233 BC008939	3909	+	AF186605|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##AJ007041|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##NM_014727|MLL4|9757|myeloid/lymphoid or mixed-lineage leukemia 4##AF130255|ZBTB32|27033|zinc finger and BTB domain containing 32##NM_014383|ZBTB32|27033|zinc finger and BTB domain containing 32##BC126481|IGFLR1|79713|IGF-like family receptor 1##BC126483|IGFLR1|79713|IGF-like family receptor 1##BC144205|IGFLR1|79713|IGF-like family receptor 1##AX775837|IGFLR1|79713|IGF-like family receptor 1##AK026226|IGFLR1|79713|IGF-like family receptor 1##NM_024660|IGFLR1|79713|IGF-like family receptor 1##DQ892422|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##DQ895636|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC062474|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC049208|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AY569437|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC021186|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AK094213|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AY461582|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##BC010865|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##NM_001040425|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##NM_144987|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##AK303983|U2AF1L4|199746|U2 small nuclear RNA auxiliary factor 1-like 4##NM_172341|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##AF220053|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##BC009575|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)##AK312233|PSENEN|55851|presenilin enhancer 2 homolog (C. elegans)	1.006805	0.0	
chr5	153725019	153725168	reg1017343.p1	4.180	+	TSC_hg19_v1_chr5_+_153570292 BC050333 NM_198321 AK127135 AB078145 AB527381 AJ505950 AK074132	-154735	+	TSC_hg19_v1_chr5_+_153418558 AK315573 BC026244	-306533	+	AK296468 NM_001135037 NM_001242336 NM_005927 TSC_hg19_v1_chr5_+_153418526	-306569	+	TSC_hg19_v1_chr5_-_153825380 BC042059 AK095428	100274	-	TSC_hg19_v1_chr5_+_153825535 AK021588 NM_001131062 NM_001131063 NM_024632	100426	+	TSC_hg19_v1_chr5_+_153825568 AY341060 BC009829	100517	+	BC050333|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##NM_198321|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK127135|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AB078145|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AJ505950|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK074132|GALNT10|55568|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)##AK315573|MFAP3|4238|microfibrillar-associated protein 3##BC026244|MFAP3|4238|microfibrillar-associated protein 3##AK296468|MFAP3|4238|microfibrillar-associated protein 3##NM_001135037|MFAP3|4238|microfibrillar-associated protein 3##NM_001242336|MFAP3|4238|microfibrillar-associated protein 3##NM_005927|MFAP3|4238|microfibrillar-associated protein 3##BC042059|FLJ38109|386627|uncharacterized LOC386627##AK095428|FLJ38109|386627|uncharacterized LOC386627##AK021588|SAP30L|79685|SAP30-like##NM_001131062|SAP30L|79685|SAP30-like##NM_001131063|SAP30L|79685|SAP30-like##NM_024632|SAP30L|79685|SAP30-like##AY341060|SAP30L|79685|SAP30-like##BC009829|SAP30L|79685|SAP30-like	0.500626	0.0	
chr5	169197329	169197503	reg1004089.p2	4.180	+	TSC_hg19_v1_chr5_+_169064292 D86964 BC104900 BC113457 BC143358 AB463008	-133116	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	-133172	+	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	-186695	+	AK055998 NM_001129891	210327	-	AK292176 BC029778 NM_012188 NM_144769 AB464531 L13203 AY707089	335555	+	BC030767 NM_001102609 BC092511	462580	+	D86964|DOCK2|1794|dedicator of cytokinesis 2##BC104900|DOCK2|1794|dedicator of cytokinesis 2##BC113457|DOCK2|1794|dedicator of cytokinesis 2##BC143358|DOCK2|1794|dedicator of cytokinesis 2##NM_004946|DOCK2|1794|dedicator of cytokinesis 2##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##AK055998|FAM196B|100131897|family with sequence similarity 196, member B##NM_001129891|FAM196B|100131897|family with sequence similarity 196, member B##AK292176|FOXI1|2299|forkhead box I1##BC029778|FOXI1|2299|forkhead box I1##NM_012188|FOXI1|2299|forkhead box I1##NM_144769|FOXI1|2299|forkhead box I1##L13203|FOXI1|2299|forkhead box I1##AY707089|FOXI1|2299|forkhead box I1##BC030767|C5orf58|133874|chromosome 5 open reading frame 58##NM_001102609|C5orf58|133874|chromosome 5 open reading frame 58##BC092511|C5orf58|133874|chromosome 5 open reading frame 58	0.325225	0.0	
chr7	139357704	139357884	reg1013366.p1	4.180	+	NM_001080511	-149121	+	BC110858 BC104963 BC104965 AK126174 NM_198508	-189362	-	TSC_hg19_v1_chr7_+_139044997 AB528652 EU832106 EU832200 CU677843 AF151832 AF151817	-312780	+	TSC_hg19_v1_chr7_-_139477798 AF208291 AF326592 NM_001113239 NM_022740	120111	-	TSC_hg19_v1_chr7_+_139478042 BC014117 NM_001130966 NM_001166254	120245	+	NM_001061 NM_001166253 NM_030984 TSC_hg19_v1_chr7_+_139529052 BC041157 AK296069 AK301164 AK303440 AK301049 AB590730 M74055 S60133	171298	+	NM_001080511|CLEC2L|154790|C-type lectin domain family 2, member L##BC110858|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104963|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##BC104965|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##AK126174|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##NM_198508|KLRG2|346689|killer cell lectin-like receptor subfamily G, member 2##EU832106|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##EU832200|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151832|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF151817|LUC7L2|51631|LUC7-like 2 (S. cerevisiae)##AF208291|HIPK2|28996|homeodomain interacting protein kinase 2##AF326592|HIPK2|28996|homeodomain interacting protein kinase 2##NM_001113239|HIPK2|28996|homeodomain interacting protein kinase 2##NM_022740|HIPK2|28996|homeodomain interacting protein kinase 2##BC014117|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001130966|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166254|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001061|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_001166253|TBXAS1|6916|thromboxane A synthase 1 (platelet)##NM_030984|TBXAS1|6916|thromboxane A synthase 1 (platelet)##BC041157|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK296069|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301164|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK303440|TBXAS1|6916|thromboxane A synthase 1 (platelet)##AK301049|TBXAS1|6916|thromboxane A synthase 1 (platelet)##M74055|TBXAS1|6916|thromboxane A synthase 1 (platelet)##S60133|TBXAS1|6916|thromboxane A synthase 1 (platelet)	0.999144	0.0	denovo_WM_7:61:0.739
chr8	91685405	91685482	reg1007885.p2	4.180	+	TSC_hg19_v1_chr8_-_91657970 AY147881 NM_001008495 NM_001146273	-27428	-	AK300583 AK123958 AL834364 TSC_hg19_v1_chr8_-_91657856	-27645	-	AB529128 X06661 BC006478 AK054881 AK312491 BC020864 NM_004929	-590428	-	AF414126 TSC_hg19_v1_chr8_+_91803956 NM_022351 AK095533 BC068448 AY224210	118502	+	TSC_hg19_v1_chr8_-_91997476 NM_001190972	312019	-	TSC_hg19_v1_chr8_-_92053091 AX775961 BC033892 AK313783 NM_018710	367679	-	AY147881|TMEM64|169200|transmembrane protein 64##NM_001008495|TMEM64|169200|transmembrane protein 64##NM_001146273|TMEM64|169200|transmembrane protein 64##AK300583|TMEM64|169200|transmembrane protein 64##AK123958|TMEM64|169200|transmembrane protein 64##AL834364|TMEM64|169200|transmembrane protein 64##X06661|CALB1|793|calbindin 1, 28kDa##BC006478|CALB1|793|calbindin 1, 28kDa##AK054881|CALB1|793|calbindin 1, 28kDa##AK312491|CALB1|793|calbindin 1, 28kDa##BC020864|CALB1|793|calbindin 1, 28kDa##NM_004929|CALB1|793|calbindin 1, 28kDa##AF414126|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##NM_022351|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AK095533|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##BC068448|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AY224210|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##NM_001190972|LOC100127983|100127983|uncharacterized LOC100127983##AX775961|TMEM55A|55529|transmembrane protein 55A##BC033892|TMEM55A|55529|transmembrane protein 55A##AK313783|TMEM55A|55529|transmembrane protein 55A##NM_018710|TMEM55A|55529|transmembrane protein 55A	0.68269	0.0	denovo_WM_7:-64:0.559
chr11	77158501	77158606	reg1018016.p2	4.179	+	TSC_hg19_v1_chr11_-_77122998 AK296006 AK055228	-35554	-	AY313782 AY326450 NM_182833	-160091	-	TSC_hg19_v1_chr11_+_76883833 BC023212	-274705	+	TSC_hg19_v1_chr11_-_77184767 U51120 BC050377 BC109298 BC109299 AK293098 U24152 NM_001128620 NM_002576	26279	-	BC040443 NM_173039 TSC_hg19_v1_chr11_+_77300718 AB028147	142147	+	AB590787 AF026003 BT019907 AF005422 BC119634 BC119635 TSC_hg19_v1_chr11_-_77348840 U53454 AK315259 X91788 NM_001293	190261	-	AK296006|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK055228|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AY313782|GDPD4|220032|glycerophosphodiester phosphodiesterase domain containing 4##AY326450|GDPD4|220032|glycerophosphodiester phosphodiesterase domain containing 4##NM_182833|GDPD4|220032|glycerophosphodiester phosphodiesterase domain containing 4##BC023212|MYO7A|4647|myosin VIIA##U51120|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC050377|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109298|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC109299|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##AK293098|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##U24152|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_001128620|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##NM_002576|PAK1|5058|p21 protein (Cdc42/Rac)-activated kinase 1##BC040443|AQP11|282679|aquaporin 11##NM_173039|AQP11|282679|aquaporin 11##AB028147|AQP11|282679|aquaporin 11##AF026003|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BT019907|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AF005422|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119634|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##BC119635|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##U53454|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##AK315259|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##X91788|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A##NM_001293|CLNS1A|1207|chloride channel, nucleotide-sensitive, 1A	0.998857	0.0	denovo_WM_7:32:0.658	denovo_WM_7:33:0.245
chr14	50087213	50087383	reg1010029.p1	4.179	+	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	-21838	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-34205	-	AK309211 NM_001113498	-1943142	-	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	46	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	409	+	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	13398	-	NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2	0.0	0.0	
chr16	81862136	81862234	reg1002723.p2	4.179	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-49255	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-49283	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-49288	+	BC019670 AK315652 AK026740 NM_145168	182883	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	206676	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	206747	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.0	0.0	
chr17	34274401	34274525	reg1008324.p2	4.179	+	BC054481 NM_001199951	-3777	-	CU691088 AY742214 AY359018 NM_020426	-8004	-	AB528914 EF488474 EF488475 EF488476 EF488477 EF488478 BC032114 AK302782 AB080728 TSC_hg19_v1_chr17_-_34257778 BC127190 BC038301 NM_001034836 NM_001163120 NM_001163121 NM_145654	-16705	-	AB527929 U91746 AF055467 BC096352 BC099662 BC099663 BC099664 AF039955 NM_004590 AB007454 AK309593	34030	-	AB527896 HQ257907 BC038289 BC050647 Z49270 BC045165 NM_032962 NM_032963 TSC_hg19_v1_chr17_-_34313766 AX772826	39276	-	AB463484 AF031587 Z70292 Z70293 TSC_hg19_v1_chr17_-_34328592 U58914	54098	-	BC054481|LYZL6|57151|lysozyme-like 6##NM_001199951|LYZL6|57151|lysozyme-like 6##AY742214|LYZL6|57151|lysozyme-like 6##AY359018|LYZL6|57151|lysozyme-like 6##NM_020426|LYZL6|57151|lysozyme-like 6##EF488474|RDM1|201299|RAD52 motif 1##EF488475|RDM1|201299|RAD52 motif 1##EF488476|RDM1|201299|RAD52 motif 1##EF488477|RDM1|201299|RAD52 motif 1##EF488478|RDM1|201299|RAD52 motif 1##BC032114|RDM1|201299|RAD52 motif 1##AK302782|RDM1|201299|RAD52 motif 1##AB080728|RDM1|201299|RAD52 motif 1##BC127190|RDM1|201299|RAD52 motif 1##BC038301|RDM1|201299|RAD52 motif 1##NM_001034836|RDM1|201299|RAD52 motif 1##NM_001163120|RDM1|201299|RAD52 motif 1##NM_001163121|RDM1|201299|RAD52 motif 1##NM_145654|RDM1|201299|RAD52 motif 1##U91746|CCL16|6360|chemokine (C-C motif) ligand 16##AF055467|CCL16|6360|chemokine (C-C motif) ligand 16##BC096352|CCL16|6360|chemokine (C-C motif) ligand 16##BC099662|CCL16|6360|chemokine (C-C motif) ligand 16##BC099663|CCL16|6360|chemokine (C-C motif) ligand 16##BC099664|CCL16|6360|chemokine (C-C motif) ligand 16##AF039955|CCL16|6360|chemokine (C-C motif) ligand 16##NM_004590|CCL16|6360|chemokine (C-C motif) ligand 16##AB007454|CCL16|6360|chemokine (C-C motif) ligand 16##HQ257907|CCL14|6358|chemokine (C-C motif) ligand 14##BC038289|CCL14|6358|chemokine (C-C motif) ligand 14##BC050647|CCL14|6358|chemokine (C-C motif) ligand 14##Z49270|CCL14|6358|chemokine (C-C motif) ligand 14##BC045165|CCL14|6358|chemokine (C-C motif) ligand 14##NM_032962|CCL14|6358|chemokine (C-C motif) ligand 14##NM_032963|CCL14|6358|chemokine (C-C motif) ligand 14##AF031587|CCL15|6359|chemokine (C-C motif) ligand 15##Z70292|CCL14-CCL15|348249|CCL14-CCL15 readthrough##Z70293|CCL14-CCL15|348249|CCL14-CCL15 readthrough##U58914|CCL15|6359|chemokine (C-C motif) ligand 15	0.99645	0.0	
chr3	160203674	160203805	reg1015229.p1	4.179	+	TSC_hg19_v1_chr3_-_160167605 BC109259 BC109260 BC033011 BC068444 AY159379 NM_173084	-36116	-	TSC_hg19_v1_chr3_-_160167549 AK291284	-36202	-	NM_005496 AL136877	-85375	+	CU689904 AB002533 DQ890866 DQ894021 TSC_hg19_v1_chr3_-_160283092	79355	-	TSC_hg19_v1_chr3_-_160283202 U93240	79453	-	TSC_hg19_v1_chr3_-_160283329 BC028691 AK291041	79581	-	BC109259|TRIM59|286827|tripartite motif containing 59##BC109260|TRIM59|286827|tripartite motif containing 59##AY159379|TRIM59|286827|tripartite motif containing 59##NM_173084|TRIM59|286827|tripartite motif containing 59##AK291284|TRIM59|286827|tripartite motif containing 59##NM_005496|SMC4|10051|structural maintenance of chromosomes 4##AL136877|SMC4|10051|structural maintenance of chromosomes 4##AB002533|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##DQ890866|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##DQ894021|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##U93240|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##BC028691|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)##AK291041|KPNA4|3840|karyopherin alpha 4 (importin alpha 3)	0.999063	0.0	
chr3	194024593	194024708	reg1013458.p1	4.179	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	-170695	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	-170717	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-713485	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	47424	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	65817	-	NM_004488	95344	-	AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##NM_004488|GP5|2814|glycoprotein V (platelet)	0.288982	0.0	denovo_WM_7:-100:0.289
chr7	47402880	47402946	reg1015499.p2	4.179	+	DQ884396 DQ884397 DQ884398 AB590345 DQ895344 BC018962 BC000013 M31159 BC064987 TSC_hg19_v1_chr7_-_45960872 AK075483 AK095991 AK123735 AK055632 AK056274 AK091706 AK091745 AK092447 AK095408 AK095864 AK095869 AK095900 AK095907 AK095974 AK097201 AK122873 AK125224 AK127537 AK129951 AK130884 AK297767 AK298143 AK315668 AX747551 NM_000598 NM_001013398 X64875	-1442107	-	AF042356 TSC_hg19_v1_chr7_+_45933167	-1469779	+	NM_000596 TSC_hg19_v1_chr7_+_45928086 AK314925 BC057806 M31145 BC035263 X12385 M20841 X13405 Y00856 BT019685 FJ795026	-1474808	+	TSC_hg19_v1_chr7_-_47579207 BC071791	176296	-	TSC_hg19_v1_chr7_-_47621681 CR749644	218750	-	AK092864 AX747776 NM_022748 TSC_hg19_v1_chr7_-_47621743	218870	-	DQ884396|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884397|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ884398|IGFBP3|3486|insulin-like growth factor binding protein 3##DQ895344|IGFBP3|3486|insulin-like growth factor binding protein 3##BC018962|IGFBP3|3486|insulin-like growth factor binding protein 3##BC000013|IGFBP3|3486|insulin-like growth factor binding protein 3##M31159|IGFBP3|3486|insulin-like growth factor binding protein 3##BC064987|IGFBP3|3486|insulin-like growth factor binding protein 3##AK075483|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095991|IGFBP3|3486|insulin-like growth factor binding protein 3##AK123735|IGFBP3|3486|insulin-like growth factor binding protein 3##AK055632|IGFBP3|3486|insulin-like growth factor binding protein 3##AK056274|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091706|IGFBP3|3486|insulin-like growth factor binding protein 3##AK091745|IGFBP3|3486|insulin-like growth factor binding protein 3##AK092447|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095408|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095864|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095869|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095900|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095907|IGFBP3|3486|insulin-like growth factor binding protein 3##AK095974|IGFBP3|3486|insulin-like growth factor binding protein 3##AK097201|IGFBP3|3486|insulin-like growth factor binding protein 3##AK122873|IGFBP3|3486|insulin-like growth factor binding protein 3##AK125224|IGFBP3|3486|insulin-like growth factor binding protein 3##AK127537|IGFBP3|3486|insulin-like growth factor binding protein 3##AK129951|IGFBP3|3486|insulin-like growth factor binding protein 3##AK130884|IGFBP3|3486|insulin-like growth factor binding protein 3##AK297767|IGFBP3|3486|insulin-like growth factor binding protein 3##AK298143|IGFBP3|3486|insulin-like growth factor binding protein 3##AK315668|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000598|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_001013398|IGFBP3|3486|insulin-like growth factor binding protein 3##X64875|IGFBP3|3486|insulin-like growth factor binding protein 3##NM_000596|IGFBP1|3484|insulin-like growth factor binding protein 1##AK314925|IGFBP1|3484|insulin-like growth factor binding protein 1##BC057806|IGFBP1|3484|insulin-like growth factor binding protein 1##M31145|IGFBP1|3484|insulin-like growth factor binding protein 1##BC035263|IGFBP1|3484|insulin-like growth factor binding protein 1##X12385|IGFBP1|3484|insulin-like growth factor binding protein 1##M20841|IGFBP1|3484|insulin-like growth factor binding protein 1##X13405|IGFBP1|3484|insulin-like growth factor binding protein 1##Y00856|IGFBP1|3484|insulin-like growth factor binding protein 1##BT019685|IGFBP1|3484|insulin-like growth factor binding protein 1##FJ795026|IGFBP1|3484|insulin-like growth factor binding protein 1##BC071791|TNS3|64759|tensin 3##CR749644|TNS3|64759|tensin 3##AK092864|TNS3|64759|tensin 3##NM_022748|TNS3|64759|tensin 3	0.0	0.0	
chrX	11381308	11381434	reg1003387.p2	4.179	+	AF436849 BC069118 M86932 NM_001142 NM_182680 NM_182681 BC074951	-69829	+	AF177663 NM_013423 AK297713	-97263	-	TSC_hg19_v1_chrX_+_11129467 BC001691 BC095455 U36787	-251902	+	AF012272 AF022212 AF117067 NM_006125 NM_013427	302449	-	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	394972	+	NM_001193270 AK300814	395346	+	AF436849|AMELX|265|amelogenin, X-linked##BC069118|AMELX|265|amelogenin, X-linked##M86932|AMELX|265|amelogenin, X-linked##NM_001142|AMELX|265|amelogenin, X-linked##NM_182680|AMELX|265|amelogenin, X-linked##NM_182681|AMELX|265|amelogenin, X-linked##BC074951|AMELX|265|amelogenin, X-linked##AF177663|ARHGAP6|395|Rho GTPase activating protein 6##NM_013423|ARHGAP6|395|Rho GTPase activating protein 6##AK297713|ARHGAP6|395|Rho GTPase activating protein 6##BC001691|HCCS|3052|holocytochrome c synthase##BC095455|HCCS|3052|holocytochrome c synthase##U36787|HCCS|3052|holocytochrome c synthase##AF012272|ARHGAP6|395|Rho GTPase activating protein 6##AF022212|ARHGAP6|395|Rho GTPase activating protein 6##AF117067|ARHGAP6|395|Rho GTPase activating protein 6##NM_006125|ARHGAP6|395|Rho GTPase activating protein 6##NM_013427|ARHGAP6|395|Rho GTPase activating protein 6##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)	0.0	0.0	
chr1	154910269	154910364	reg1012527.p1	4.178	+	TSC_hg19_v1_chr1_-_154909401 BC007694 BC000237 AK130234 AK312803 BC006089 NM_006556	-883	-	BT019976 CR541998 TSC_hg19_v1_chr1_-_154909187 L77213	-1142	-	AF031815 Y08263 TSC_hg19_v1_chr1_-_154842763 AJ251016 AK310077 NM_001204087 NM_002249	-67570	-	TSC_hg19_v1_chr1_-_154928571 BC016852 NM_020524 AF221521 AK023219 AK303413 AK303863 AK300987	18263	-	TSC_hg19_v1_chr1_-_154928604 AK022497 AK300544 AK310712 AK315551	18295	-	AF289598 AF457208 AB528446 DQ893379 DQ895952 TSC_hg19_v1_chr1_-_154934210 AK092389 AX747515 BC006132 BC032099	23815	-	BC007694|PMVK|10654|phosphomevalonate kinase##AK130234|PMVK|10654|phosphomevalonate kinase##AK312803|PMVK|10654|phosphomevalonate kinase##BC006089|PMVK|10654|phosphomevalonate kinase##NM_006556|PMVK|10654|phosphomevalonate kinase##BT019976|PMVK|10654|phosphomevalonate kinase##CR541998|PMVK|10654|phosphomevalonate kinase##L77213|PMVK|10654|phosphomevalonate kinase##AF031815|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##Y08263|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AJ251016|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AK310077|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001204087|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_002249|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC016852|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##NM_020524|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AF221521|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK023219|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK303413|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK303863|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK300987|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK022497|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK300544|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK310712|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AK315551|PBXIP1|57326|pre-B-cell leukemia homeobox interacting protein 1##AF289598|PYGO2|90780|pygopus homolog 2 (Drosophila)##AF457208|PYGO2|90780|pygopus homolog 2 (Drosophila)##DQ893379|PYGO2|90780|pygopus homolog 2 (Drosophila)##DQ895952|PYGO2|90780|pygopus homolog 2 (Drosophila)##AK092389|PYGO2|90780|pygopus homolog 2 (Drosophila)##BC006132|PYGO2|90780|pygopus homolog 2 (Drosophila)##BC032099|PYGO2|90780|pygopus homolog 2 (Drosophila)	1.060532	0.0	denovo_WM_7:11:0.282	denovo_WM_7:12:0.282	denovo_WM_7:13:0.287
chr1	235271670	235271793	reg1012096.p2	4.178	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-375957	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-526485	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-527873	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	20358	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	20500	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	52832	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr15	41727130	41727224	reg1015318.p2	4.178	+	TSC_hg19_v1_chr15_+_41709329 NM_015138 AK292302 D87440 BC015052 AB383821	-17817	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	-32515	-	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	-102012	+	NM_002220 TSC_hg19_v1_chr15_+_41786071 BC026331 X54938 AB463780	58913	+	BC143903 D16105 AK314006 BC045607 X60702 AK296892 NM_001135685 NM_002344 NM_206961	78861	-	AB037824 TSC_hg19_v1_chr15_-_41836456 AK290224 BC000246	109272	-	NM_015138|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK292302|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##D87440|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC015052|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_002220|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC026331|ITPKA|3706|inositol-trisphosphate 3-kinase A##X54938|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC143903|LTK|4058|leukocyte receptor tyrosine kinase##D16105|LTK|4058|leukocyte receptor tyrosine kinase##AK314006|LTK|4058|leukocyte receptor tyrosine kinase##BC045607|LTK|4058|leukocyte receptor tyrosine kinase##X60702|LTK|4058|leukocyte receptor tyrosine kinase##AK296892|LTK|4058|leukocyte receptor tyrosine kinase##NM_001135685|LTK|4058|leukocyte receptor tyrosine kinase##NM_002344|LTK|4058|leukocyte receptor tyrosine kinase##NM_206961|LTK|4058|leukocyte receptor tyrosine kinase##AB037824|RPAP1|26015|RNA polymerase II associated protein 1##AK290224|RPAP1|26015|RNA polymerase II associated protein 1##BC000246|RPAP1|26015|RNA polymerase II associated protein 1	0.998546	0.0	denovo_WM_7:-7:0.449	denovo_WM_7:-8:0.449
chr19	16549784	16549940	reg1010081.p1	4.178	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-114093	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-114221	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-241112	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	32914	-	TSC_hg19_v1_chr19_-_16582810 AK291359	32990	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	57108	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.992121	0.0	denovo_WM_7:31:0.831
chr2	85158476	85158611	reg1016404.p1	4.178	+	TSC_hg19_v1_chr2_+_85133055 M92381	-25481	+	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	-25748	+	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	-50240	-	TSC_hg19_v1_chr2_+_85198299 NM_020122	39741	+	BC000178 TSC_hg19_v1_chr2_+_85198470 AK314761 AB083199 AF155652 AK023403	39948	+	TSC_hg19_v1_chr2_+_85360536 BC058894 NM_031283 AB031046 AB590638	202116	+	M92381|TMSB10|9168|thymosin beta 10##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_020122|KCMF1|56888|potassium channel modulatory factor 1##BC000178|KCMF1|56888|potassium channel modulatory factor 1##AK314761|KCMF1|56888|potassium channel modulatory factor 1##AB083199|KCMF1|56888|potassium channel modulatory factor 1##AF155652|KCMF1|56888|potassium channel modulatory factor 1##AK023403|KCMF1|56888|potassium channel modulatory factor 1##BC058894|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##NM_031283|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)##AB031046|TCF7L1|83439|transcription factor 7-like 1 (T-cell specific, HMG-box)	0.996525	0.0	denovo_WM_7:-47:0.879
chr6	74290212	74290392	reg1007459.p2	4.178	+	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	-59556	-	TSC_hg19_v1_chr6_-_74230163 AY043301	-60132	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	-61133	-	DQ891462 EU176585 TSC_hg19_v1_chr6_-_74363649	73328	-	BC020961 AK075320 TSC_hg19_v1_chr6_-_74363692 AK315789 AK294068 NM_012434 AJ387747	73478	-	TSC_hg19_v1_chr6_+_74405513 NM_001159587 NM_001159588 NM_133493	115263	+	BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ891462|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##EU176585|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##BC020961|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK075320|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK315789|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AK294068|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_012434|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##AJ387747|SLC17A5|26503|solute carrier family 17 (anion/sugar transporter), member 5##NM_001159587|CD109|135228|CD109 molecule##NM_001159588|CD109|135228|CD109 molecule##NM_133493|CD109|135228|CD109 molecule	0.949397	0.0	denovo_WM_7:33:0.487
chr6	81596289	81596433	reg1014197.p2	4.178	+	TSC_hg19_v1_chr6_+_80816397 AK289977 BC040139 M55575 AB529112 BT020063 X52446	-779924	+	TSC_hg19_v1_chr6_+_80816387 AK316545 BC034481	-779978	+	TSC_hg19_v1_chr6_+_80816367 NM_000056 NM_183050 AK304353 U50708	-780034	+	AY740520 FJ211061 CU674334 CU675631 TSC_hg19_v1_chr6_-_82461975	865560	-	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	866050	-	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	1361052	-	AK289977|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC040139|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##M55575|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BT020063|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##X52446|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK316545|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC034481|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_000056|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_183050|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK304353|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##U50708|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AY740520|FAM46A|55603|family with sequence similarity 46, member A##AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase	0.0	0.0	
chr10	5888534	5888713	reg1009653.p2	4.177	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-33188	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-33357	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-115951	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	43233	-	TSC_hg19_v1_chr10_+_5932205 AK095343	43576	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	43588	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.0	0.0	
chr4	114743680	114743805	reg1011797.p1	4.177	+	TSC_hg19_v1_chr4_-_114682923 NM_001221 NM_172114 NM_172115 NM_172127 NM_172128 NM_172129	-60772	-	TSC_hg19_v1_chr4_-_114682619 AK055642 AB209288	-61086	-	BC022558 TSC_hg19_v1_chr4_-_114682567	-61176	-	AK307532 TSC_hg19_v1_chr4_-_114900840 AY358647 NM_024590	157097	-	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	775841	+	NM_003360 U30930	799780	+	NM_001221|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172114|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172115|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172127|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172128|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172129|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK055642|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AB209288|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##BC022558|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK307532|ARSJ|79642|arylsulfatase family, member J##AY358647|ARSJ|79642|arylsulfatase family, member J##NM_024590|ARSJ|79642|arylsulfatase family, member J##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8	1.112864	0.0	denovo_WM_7:-13:0.782
chr11	68039959	68040092	reg1012781.p2	4.176	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-567	-	TSC_hg19_v1_chr11_-_68039418 AF264781	-639	-	TSC_hg19_v1_chr11_-_67981112 AF264782 BC002522 BC065287 BC087834 NM_016028 NM_017635 BC108304 AK314336 AK299201	-59046	-	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	40064	+	AF088027 TSC_hg19_v1_chr11_+_68115450	75411	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	188184	+	NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##AF264781|C11orf24|53838|chromosome 11 open reading frame 24##AF264782|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC002522|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC065287|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC087834|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_016028|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##NM_017635|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##BC108304|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK314336|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AK299201|SUV420H1|51111|suppressor of variegation 4-20 homolog 1 (Drosophila)##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3	0.0	0.0	
chr12	112445931	112446034	reg1012101.p1	4.176	+	NM_003668 NM_139078 BC047284	-165662	+	BC041049 TSC_hg19_v1_chr12_+_112280044	-165909	+	AK122767 TSC_hg19_v1_chr12_+_112280039	-166070	+	BC048796 BC070135 AK074648 TSC_hg19_v1_chr12_-_112450970 AL833501 BC000282 AK092832 AX747754 NM_001193453 NM_001193531 NM_138341	4986	-	NM_001034025 NM_006817 TSC_hg19_v1_chr12_+_112451212 BC101493 BC101495	5204	+	TSC_hg19_v1_chr12_+_112451229 AK309426	5248	+	NM_003668|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##NM_139078|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC047284|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC041049|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##AK122767|MAPKAPK5|8550|mitogen-activated protein kinase-activated protein kinase 5##BC048796|TMEM116|89894|transmembrane protein 116##BC070135|TMEM116|89894|transmembrane protein 116##AK074648|TMEM116|89894|transmembrane protein 116##AL833501|TMEM116|89894|transmembrane protein 116##BC000282|TMEM116|89894|transmembrane protein 116##AK092832|LOC728543|728543|uncharacterized LOC728543##NM_001193453|TMEM116|89894|transmembrane protein 116##NM_001193531|TMEM116|89894|transmembrane protein 116##NM_138341|TMEM116|89894|transmembrane protein 116##NM_001034025|ERP29|10961|endoplasmic reticulum protein 29##NM_006817|ERP29|10961|endoplasmic reticulum protein 29##BC101493|ERP29|10961|endoplasmic reticulum protein 29##BC101495|ERP29|10961|endoplasmic reticulum protein 29	0.981052	0.0	denovo_WM_7:15:0.382	denovo_WM_7:16:0.428
chr13	103926855	103926999	reg1013994.p2	4.176	+	NM_000452 U10417	-207732	-	TSC_hg19_v1_chr13_+_103498385 BX647399 AK303558 X69978 AK299758 L20046 D16305 CU689168 DQ891818 DQ895006	-428441	+	AK294708 TSC_hg19_v1_chr13_+_103498254	-428673	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	2191377	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	2191664	+	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	3260422	-	NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BX647399|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK303558|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##X69978|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK299758|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##L20046|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##D16305|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ891818|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ895006|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK294708|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2	1.991407	0.0	denovo_WM_7:-76:0.982	denovo_WM_7:77:0.910
chr16	48721537	48721658	reg1013578.p2	4.176	+	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	-77481	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-302345	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-321806	-	AB527638 TSC_hg19_v1_chr16_-_49315397	593796	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	593903	-	M58583 TSC_hg19_v1_chr16_-_49315772 AK314276 NM_004352	594137	-	BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor##M58583|CBLN1|869|cerebellin 1 precursor##AK314276|CBLN1|869|cerebellin 1 precursor##NM_004352|CBLN1|869|cerebellin 1 precursor	0.93547	0.0	denovo_WM_7:35:0.463	denovo_WM_7:40:0.266
chr2	48575000	48575148	reg1013745.p2	4.176	+	TSC_hg19_v1_chr2_+_48541851 NM_002158 BC063305	-33256	+	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	-442281	-	AK304140 AK315108 NM_025133	-459223	-	AY134855 NM_001135629 NM_001193475 NM_152994 TSC_hg19_v1_chr2_+_48667936 AK172762 AK122900 AY092062 BC111059 AK307755 BC117279 BC143466 BC143463 BC040721	92898	+	AK309740 NM_001198593 TSC_hg19_v1_chr2_+_48757177	182047	+	TSC_hg19_v1_chr2_+_48757357 AK314464 NM_001198595 NM_006873 CR936807	182251	+	NM_002158|FOXN2|3344|forkhead box N2##BC063305|FOXN2|3344|forkhead box N2##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##AY134855|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001135629|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_001193475|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##NM_152994|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK172762|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK122900|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AY092062|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC111059|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK307755|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC117279|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143466|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC143463|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##BC040721|PPP1R21|129285|protein phosphatase 1, regulatory subunit 21##AK309740|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##NM_001198593|STON1-GTF2A1L|286749|STON1-GTF2A1L readthrough##AK314464|STON1|11037|stonin 1##NM_001198595|STON1|11037|stonin 1##NM_006873|STON1|11037|stonin 1##CR936807|STON1|11037|stonin 1	0.028217	0.0	
chr2	70351094	70351274	reg1013281.p1	4.176	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-36186	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-36267	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-36357	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	66937	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	124535	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	134066	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	0.997686	0.0	denovo_WM_7:-72:0.683
chr7	77020326	77020506	reg1009900.p1	4.176	+	CU676076 CU689762 GQ129349 GQ129350 AK222999 AK312672 BC073986 TSC_hg19_v1_chr7_-_76829135 BC017813 BC033820 Z36531 NM_006682 AK310921	-191280	-	BC036053 NM_020879 BX649000 AK292491 HM370402	-268470	+	BC144677 BC000487 U10099 TSC_hg19_v1_chr7_-_76256606 NM_012230 NM_152992	-763869	-	TSC_hg19_v1_chr7_-_77045731 BC110797 NM_017439	25302	-	TSC_hg19_v1_chr7_+_77166392 BC050008	145962	+	TSC_hg19_v1_chr7_+_77166764 NM_002835 AB209524 AK314236 AK289573 M93425 D13380 AB384966	146390	+	GQ129349|FGL2|10875|fibrinogen-like 2##GQ129350|FGL2|10875|fibrinogen-like 2##AK222999|FGL2|10875|fibrinogen-like 2##AK312672|FGL2|10875|fibrinogen-like 2##BC073986|FGL2|10875|fibrinogen-like 2##BC017813|FGL2|10875|fibrinogen-like 2##BC033820|FGL2|10875|fibrinogen-like 2##Z36531|FGL2|10875|fibrinogen-like 2##NM_006682|FGL2|10875|fibrinogen-like 2##BC036053|CCDC146|57639|coiled-coil domain containing 146##NM_020879|CCDC146|57639|coiled-coil domain containing 146##BX649000|CCDC146|57639|coiled-coil domain containing 146##AK292491|CCDC146|57639|coiled-coil domain containing 146##HM370402|CCDC146|57639|coiled-coil domain containing 146##BC000487|POMZP3|22932|POM121 and ZP3 fusion##U10099|POMZP3|22932|POM121 and ZP3 fusion##NM_012230|POMZP3|22932|POM121 and ZP3 fusion##NM_152992|POMZP3|22932|POM121 and ZP3 fusion##BC110797|PION|54103|pigeon homolog (Drosophila)##NM_017439|PION|54103|pigeon homolog (Drosophila)##BC050008|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##NM_002835|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AB209524|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK314236|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##AK289573|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##M93425|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12##D13380|PTPN12|5782|protein tyrosine phosphatase, non-receptor type 12	2.078569	0.0	denovo_WM_7:34:0.273	denovo_WM_7:35:0.234	denovo_WM_7:36:0.233	denovo_WM_7:37:0.232	denovo_WM_7:52:0.890
chr10	90760970	90761079	reg1014036.p1	4.175	+	AK311424 TSC_hg19_v1_chr10_+_90751184 AK311164 AK311499	-9903	+	TSC_hg19_v1_chr10_-_90751090 AY692464 NM_001141945	-9974	-	TSC_hg19_v1_chr10_+_90750599 AK290978 X63717 M67454 X83490 X83491 X83492 X83493 DQ894675 AY495076 CR450307 EU481974 FJ373045 FJ373046 FM246457 FM246458 FM246459 X89101 Z47993 Z47994 Z47995 Z66556 Z70519 Z70520	-10516	+	CU687230 DQ892026 DQ895218 BC072430 AF059214 BC017843 NM_003956 AK314865	206036	-	U08464 Z31690 TSC_hg19_v1_chr10_-_91011533 AK222760 AK290241 AK297079 AK314665 M74775	250506	-	AK130882 TSC_hg19_v1_chr10_-_91011565	250543	-	AK311424|FAS|355|Fas (TNF receptor superfamily, member 6)##AK311164|FAS|355|Fas (TNF receptor superfamily, member 6)##AK311499|FAS|355|Fas (TNF receptor superfamily, member 6)##AY692464|ACTA2|59|actin, alpha 2, smooth muscle, aorta##NM_001141945|ACTA2|59|actin, alpha 2, smooth muscle, aorta##AK290978|FAS|355|Fas (TNF receptor superfamily, member 6)##X63717|FAS|355|Fas (TNF receptor superfamily, member 6)##M67454|FAS|355|Fas (TNF receptor superfamily, member 6)##X83490|FAS|355|Fas (TNF receptor superfamily, member 6)##X83491|FAS|355|Fas (TNF receptor superfamily, member 6)##X83492|FAS|355|Fas (TNF receptor superfamily, member 6)##X83493|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ894675|FAS|355|Fas (TNF receptor superfamily, member 6)##AY495076|FAS|355|Fas (TNF receptor superfamily, member 6)##CR450307|FAS|355|Fas (TNF receptor superfamily, member 6)##EU481974|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373045|FAS|355|Fas (TNF receptor superfamily, member 6)##FJ373046|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246457|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246458|FAS|355|Fas (TNF receptor superfamily, member 6)##FM246459|FAS|355|Fas (TNF receptor superfamily, member 6)##X89101|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47993|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47994|FAS|355|Fas (TNF receptor superfamily, member 6)##Z47995|FAS|355|Fas (TNF receptor superfamily, member 6)##Z66556|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70519|FAS|355|Fas (TNF receptor superfamily, member 6)##Z70520|FAS|355|Fas (TNF receptor superfamily, member 6)##DQ892026|CH25H|9023|cholesterol 25-hydroxylase##DQ895218|CH25H|9023|cholesterol 25-hydroxylase##BC072430|CH25H|9023|cholesterol 25-hydroxylase##AF059214|CH25H|9023|cholesterol 25-hydroxylase##BC017843|CH25H|9023|cholesterol 25-hydroxylase##NM_003956|CH25H|9023|cholesterol 25-hydroxylase##AK314865|CH25H|9023|cholesterol 25-hydroxylase##U08464|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##Z31690|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK222760|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK290241|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK297079|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK314665|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##M74775|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase##AK130882|LIPA|3988|lipase A, lysosomal acid, cholesterol esterase	0.990595	0.0	denovo_WM_7:3:0.835
chr1	12212126	12212237	reg1011279.p1	4.175	+	D86042 BC063482 NM_152942 BC073839 BC141804	-26165	+	M83554 NM_001243 BC136400 BC171762 S75768	-88637	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-132611	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	14880	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	14930	+	TSC_hg19_v1_chr1_+_12290088 NM_015378 NM_018156 AJ608774 AJ608775 AL162331	77926	+	D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_015378|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##NM_018156|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608774|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AJ608775|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)##AL162331|VPS13D|55187|vacuolar protein sorting 13 homolog D (S. cerevisiae)	0.974362	0.036856	denovo_WM_7:-14:0.964
chr1	154779675	154779788	reg1014662.p1	4.175	+	TSC_hg19_v1_chr1_-_154600448 NM_001025107 AK097241	-179266	-	X98561 TSC_hg19_v1_chr1_-_154600438 AB209891 AF084516 BX640741 BX538232	-179317	-	AK304153 TSC_hg19_v1_chr1_-_154580680 X79449 NM_001111 NM_015840 NM_015841	-199031	-	CU692066 HQ448417 AF438203 BC042147 NM_170782	52531	-	BX649146 TSC_hg19_v1_chr1_-_154840541	60770	-	AF031815 Y08263 TSC_hg19_v1_chr1_-_154842763 AJ251016 AK310077 NM_001204087 NM_002249	63015	-	NM_001025107|ADAR|103|adenosine deaminase, RNA-specific##AK097241|ADAR|103|adenosine deaminase, RNA-specific##AB209891|ADAR|103|adenosine deaminase, RNA-specific##AF084516|ADAR|103|adenosine deaminase, RNA-specific##BX640741|ADAR|103|adenosine deaminase, RNA-specific##BX538232|ADAR|103|adenosine deaminase, RNA-specific##AK304153|ADAR|103|adenosine deaminase, RNA-specific##X79449|ADAR|103|adenosine deaminase, RNA-specific##NM_001111|ADAR|103|adenosine deaminase, RNA-specific##NM_015840|ADAR|103|adenosine deaminase, RNA-specific##NM_015841|ADAR|103|adenosine deaminase, RNA-specific##HQ448417|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF438203|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##BC042147|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_170782|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AF031815|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##Y08263|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AJ251016|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##AK310077|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_001204087|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3##NM_002249|KCNN3|3782|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	0.0	0.0	
chr1	224832385	224832477	reg1012687.p1	4.175	+	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	-28252	+	AB209887 NM_001115113 NM_025160	-210431	-	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	-210671	-	TSC_hg19_v1_chr1_+_225117383 NM_001145154 NM_001373 NM_144989 BC119716 BC119717 BC042869	284934	+	AK222834 TSC_hg19_v1_chr1_-_225615757 L25931 AB209514 BC020079 AK303589 AK312258	783298	-	TSC_hg19_v1_chr1_-_225615798 NM_002296	783370	-	AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)##AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##NM_001145154|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_001373|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_144989|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119716|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119717|DNAH14|127602|dynein, axonemal, heavy chain 14##BC042869|DNAH14|127602|dynein, axonemal, heavy chain 14##AK222834|LBR|3930|lamin B receptor##L25931|LBR|3930|lamin B receptor##AB209514|LBR|3930|lamin B receptor##BC020079|LBR|3930|lamin B receptor##AK303589|LBR|3930|lamin B receptor##AK312258|LBR|3930|lamin B receptor##NM_002296|LBR|3930|lamin B receptor	0.0	0.780785	CTCF.p2:13:0.781
chr15	42924466	42924556	reg1012930.p2	4.175	+	TSC_hg19_v1_chr15_+_42867803 CR627426 NM_020759	-56704	+	TSC_hg19_v1_chr15_+_42841055 NM_001130447 NM_018097 AK022939 BC010903 AK001322	-83482	+	TSC_hg19_v1_chr15_-_42840992 AK094891 NM_153260	-83507	-	TSC_hg19_v1_chr15_-_43029313 BC052568 BC066640	104709	-	TSC_hg19_v1_chr15_-_43029327 AF525398 NM_138477	104856	-	AF525400 TSC_hg19_v1_chr15_-_43212975 AK131372 BC041876 NM_173500 BC071556	288471	-	NM_020759|STARD9|57519|StAR-related lipid transfer (START) domain containing 9##NM_001130447|HAUS2|55142|HAUS augmin-like complex, subunit 2##NM_018097|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK022939|HAUS2|55142|HAUS augmin-like complex, subunit 2##BC010903|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK001322|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK094891|LRRC57|255252|leucine rich repeat containing 57##NM_153260|LRRC57|255252|leucine rich repeat containing 57##BC052568|CDAN1|146059|congenital dyserythropoietic anemia, type I##BC066640|CDAN1|146059|congenital dyserythropoietic anemia, type I##AF525398|CDAN1|146059|congenital dyserythropoietic anemia, type I##NM_138477|CDAN1|146059|congenital dyserythropoietic anemia, type I##AF525400|TTBK2|146057|tau tubulin kinase 2##AK131372|TTBK2|146057|tau tubulin kinase 2##BC041876|TTBK2|146057|tau tubulin kinase 2##NM_173500|TTBK2|146057|tau tubulin kinase 2##BC071556|TTBK2|146057|tau tubulin kinase 2	0.0	0.0	
chr18	23795657	23795794	reg1013719.p2	4.175	+	BC042820 NM_001025096 NM_001025097 NM_144662 BC025393 BC028371 BC028686 BC025389 BC047355 BC021713	-81877	+	AB527567 EU832762 GQ129305 AB300354 AB300355 AB300356 AB300357 AF230662 AF244972 AF257500 AF343880 BC096221 BC096222 BC096223 BC096224 CR542088 CR542103 X79201 TSC_hg19_v1_chr18_-_23670574 AK304305 AK316302 AK316338 AK299082 AK307923 AK289510 NM_001007559 NM_005637 AK301504	-125145	-	AJ518106 BC032869 TSC_hg19_v1_chr18_-_22932114 AK027354 AK293067 NM_015461	-863562	-	TSC_hg19_v1_chr18_+_23806444 NM_005640 AB234096	10692	+	NM_001142730 TSC_hg19_v1_chr18_-_24128518	332785	-	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	333516	-	BC042820|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025096|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_001025097|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##NM_144662|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025393|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028371|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC028686|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC025389|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC047355|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##BC021713|PSMA8|143471|proteasome (prosome, macropain) subunit, alpha type, 8##EU832762|SS18|6760|synovial sarcoma translocation, chromosome 18##GQ129305|SS18|6760|synovial sarcoma translocation, chromosome 18##AF244972|SS18|6760|synovial sarcoma translocation, chromosome 18##AF343880|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096221|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096222|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096223|SS18|6760|synovial sarcoma translocation, chromosome 18##BC096224|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542088|SS18|6760|synovial sarcoma translocation, chromosome 18##CR542103|SS18|6760|synovial sarcoma translocation, chromosome 18##X79201|SS18|6760|synovial sarcoma translocation, chromosome 18##AK304305|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316302|SS18|6760|synovial sarcoma translocation, chromosome 18##AK316338|SS18|6760|synovial sarcoma translocation, chromosome 18##AK299082|SS18|6760|synovial sarcoma translocation, chromosome 18##AK307923|SS18|6760|synovial sarcoma translocation, chromosome 18##AK289510|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_001007559|SS18|6760|synovial sarcoma translocation, chromosome 18##NM_005637|SS18|6760|synovial sarcoma translocation, chromosome 18##AK301504|SS18|6760|synovial sarcoma translocation, chromosome 18##AJ518106|ZNF521|25925|zinc finger protein 521##BC032869|ZNF521|25925|zinc finger protein 521##AK027354|ZNF521|25925|zinc finger protein 521##AK293067|ZNF521|25925|zinc finger protein 521##NM_015461|ZNF521|25925|zinc finger protein 521##NM_005640|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AB234096|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1	0.0	0.0	
chr2	242041703	242041826	reg1015569.p1	4.175	+	TSC_hg19_v1_chr2_-_242041703 BC053533 AK093695 AK291665 AK294192 BX648184 AK131298 AF161359 AK296515 NM_182501	-38	-	NM_001080437	-103510	+	AK056601 NM_001085437	-206192	-	TSC_hg19_v1_chr2_-_242088865 D50925 AF387103 BC063585 AK056516 AK302417 BC050565 AK302561 NM_001252119 NM_001252122 NM_001252124 NM_015148	47107	-	AK308015 BC051689 TSC_hg19_v1_chr2_+_242089094	47294	+	CR749231 NM_001252120	47629	-	BC053533|MTERFD2|130916|MTERF domain containing 2##AK093695|MTERFD2|130916|MTERF domain containing 2##AK291665|MTERFD2|130916|MTERF domain containing 2##AK294192|MTERFD2|130916|MTERF domain containing 2##BX648184|MTERFD2|130916|MTERF domain containing 2##AK131298|MTERFD2|130916|MTERF domain containing 2##AF161359|MTERFD2|130916|MTERF domain containing 2##AK296515|MTERFD2|130916|MTERF domain containing 2##NM_182501|MTERFD2|130916|MTERF domain containing 2##NM_001080437|SNED1|25992|sushi, nidogen and EGF-like domains 1##AK056601|C2orf54|79919|chromosome 2 open reading frame 54##NM_001085437|C2orf54|79919|chromosome 2 open reading frame 54##D50925|PASK|23178|PAS domain containing serine/threonine kinase##AF387103|PASK|23178|PAS domain containing serine/threonine kinase##BC063585|PASK|23178|PAS domain containing serine/threonine kinase##AK056516|PASK|23178|PAS domain containing serine/threonine kinase##AK302417|PASK|23178|PAS domain containing serine/threonine kinase##BC050565|PASK|23178|PAS domain containing serine/threonine kinase##AK302561|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252119|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252122|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252124|PASK|23178|PAS domain containing serine/threonine kinase##NM_015148|PASK|23178|PAS domain containing serine/threonine kinase##AK308015|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##BC051689|PPP1R7|5510|protein phosphatase 1, regulatory subunit 7##CR749231|PASK|23178|PAS domain containing serine/threonine kinase##NM_001252120|PASK|23178|PAS domain containing serine/threonine kinase	0.0	0.0	
chr2	72148142	72148257	reg1017803.p2	4.175	+	TSC_hg19_v1_chr2_+_71693828 DQ267935 EU515161 EU515162 EU515163 EU515164 EU515165 EU515166 NM_001130455 NM_001130982 NM_001130983 NM_001130984 NM_001130985 NM_001130986 NM_001130987 AB527291	-454306	+	NM_001130976 NM_001130977 NM_001130978 NM_001130979 NM_001130980 NM_001130981 NM_003494 AF075575 BC171803 EU515155 EU515156 EU515157 EU515158 EU515159 EU515160	-467398	+	TSC_hg19_v1_chr2_+_71558911 NM_001014972 NM_001252612 NM_001252613 NM_014497 CR749322 D83032 BC010355 BX537425 AK291198 BC024000 BC143728 BC083513	-589302	+	AK295683 TSC_hg19_v1_chr2_-_72371202	223000	-	TSC_hg19_v1_chr2_-_72374955 AF252297 AK294814 BC069443 BC109205 FJ467289 NM_019885 CU686818 AK313433	226743	-	TSC_hg19_v1_chr2_-_73053163 AB384543 AB023136 NM_015189	904905	-	DQ267935|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515161|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515162|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515163|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515164|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515165|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515166|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130455|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130982|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130983|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130984|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130985|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130986|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130987|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130976|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130977|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130978|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130979|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130980|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001130981|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_003494|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##AF075575|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##BC171803|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515155|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515156|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515157|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515158|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515159|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##EU515160|DYSF|8291|dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive)##NM_001014972|ZNF638|27332|zinc finger protein 638##NM_001252612|ZNF638|27332|zinc finger protein 638##NM_001252613|ZNF638|27332|zinc finger protein 638##NM_014497|ZNF638|27332|zinc finger protein 638##CR749322|ZNF638|27332|zinc finger protein 638##D83032|ZNF638|27332|zinc finger protein 638##BC010355|ZNF638|27332|zinc finger protein 638##BX537425|ZNF638|27332|zinc finger protein 638##AK291198|ZNF638|27332|zinc finger protein 638##BC024000|ZNF638|27332|zinc finger protein 638##BC143728|ZNF638|27332|zinc finger protein 638##BC083513|ZNF638|27332|zinc finger protein 638##AK295683|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AF252297|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK294814|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC069443|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##BC109205|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##FJ467289|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##NM_019885|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AK313433|CYP26B1|56603|cytochrome P450, family 26, subfamily B, polypeptide 1##AB023136|EXOC6B|23233|exocyst complex component 6B##NM_015189|EXOC6B|23233|exocyst complex component 6B	0.999414	0.0	
chr3	69227756	69227884	reg1013564.p1	4.175	+	AM393202 BC121019 BC017925 AL832033 AK300096 AL832709 BC039202 NM_198271	-56180	-	TSC_hg19_v1_chr3_+_69134171 NM_006407 AF070523 AF115965 AF125530 AB097051 AF161476 AK301637 AK303148 AK074612 BC005143 BC107899 BC020797 AB014765 AK223566 AK312731 AB052638 AY102608	-93693	+	TSC_hg19_v1_chr3_-_69129517 AB463332 AM392893 AM393088 CR533537 CU692738 DQ893167 DQ896465 AK314751 AK289392 AK002159 AL117566 BC022853 NM_003968 NM_198195 AK298878 AK316540	-98297	-	TSC_hg19_v1_chr3_-_69299315 AK295045	71490	-	AB023230 TSC_hg19_v1_chr3_-_69435240	207411	-	NM_015123 BC057836	207621	-	AM393202|LMOD3|56203|leiomodin 3 (fetal)##BC121019|LMOD3|56203|leiomodin 3 (fetal)##BC017925|LMOD3|56203|leiomodin 3 (fetal)##AL832033|LMOD3|56203|leiomodin 3 (fetal)##AK300096|LMOD3|56203|leiomodin 3 (fetal)##AL832709|LMOD3|56203|leiomodin 3 (fetal)##BC039202|LMOD3|56203|leiomodin 3 (fetal)##NM_198271|LMOD3|56203|leiomodin 3 (fetal)##NM_006407|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF070523|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF115965|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF125530|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AB097051|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AF161476|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK301637|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK074612|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##BC005143|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##BC107899|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##BC020797|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AB014765|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK223566|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AK312731|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AB052638|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AY102608|ARL6IP5|10550|ADP-ribosylation-like factor 6 interacting protein 5##AM392893|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AM393088|UBA3|9039|ubiquitin-like modifier activating enzyme 3##CR533537|UBA3|9039|ubiquitin-like modifier activating enzyme 3##DQ893167|UBA3|9039|ubiquitin-like modifier activating enzyme 3##DQ896465|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK314751|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK289392|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK002159|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AL117566|UBA3|9039|ubiquitin-like modifier activating enzyme 3##BC022853|UBA3|9039|ubiquitin-like modifier activating enzyme 3##NM_003968|UBA3|9039|ubiquitin-like modifier activating enzyme 3##NM_198195|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK298878|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK316540|UBA3|9039|ubiquitin-like modifier activating enzyme 3##AK295045|FRMD4B|23150|FERM domain containing 4B##AB023230|FRMD4B|23150|FERM domain containing 4B##NM_015123|FRMD4B|23150|FERM domain containing 4B##BC057836|FRMD4B|23150|FERM domain containing 4B	0.97669	0.0	denovo_WM_7:18:0.419	denovo_WM_7:19:0.419
chr4	28250123	28250264	reg1014364.p2	4.175	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-1387653	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-1664513	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-1758208	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	2471806	+	AB006757 TSC_hg19_v1_chr4_+_30722198	2472001	+	TSC_hg19_v1_chr4_+_30722465 AB006756	2472266	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.0	0.0	
chr7	128090928	128091089	reg1003186.p2	4.175	+	TSC_hg19_v1_chr7_-_128050037 AK092452 BC033622 AK054667 AK122994 NM_000883 NM_001102605 NM_001142576 NM_183243	-40971	-	AK131294 TSC_hg19_v1_chr7_-_128049984 CR933672	-41028	-	AK054640 AK293413 AK297943 TSC_hg19_v1_chr7_-_128046013 NM_001142573 NM_001142574 NM_001142575	-44991	-	TSC_hg19_v1_chr7_+_128095931 NM_001098786 NM_013332 AF144755 AK024729 AK222583 BC008573 BC001863 BC093742 BC112183	4958	+	NM_018396 TSC_hg19_v1_chr7_+_128116813 AK302775 BC107586 AK002212 BC064929 BC121115 BC121116 AK299960	25829	+	BC066973 NM_001012454 NM_001128926 BC105729 BC105730 BC105731 BC047310	221338	+	AK092452|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##BC033622|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054667|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK122994|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_000883|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001102605|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142576|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_183243|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK131294|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##CR933672|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK054640|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK293413|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##AK297943|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142573|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142574|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001142575|IMPDH1|3614|IMP (inosine 5'-monophosphate) dehydrogenase 1##NM_001098786|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_013332|HILPDA|29923|hypoxia inducible lipid droplet-associated##AF144755|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK024729|HILPDA|29923|hypoxia inducible lipid droplet-associated##AK222583|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC008573|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC001863|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC093742|HILPDA|29923|hypoxia inducible lipid droplet-associated##BC112183|HILPDA|29923|hypoxia inducible lipid droplet-associated##NM_018396|METTL2B|55798|methyltransferase like 2B##AK302775|METTL2B|55798|methyltransferase like 2B##BC107586|METTL2B|55798|methyltransferase like 2B##AK002212|METTL2B|55798|methyltransferase like 2B##BC064929|METTL2B|55798|methyltransferase like 2B##BC121115|METTL2B|55798|methyltransferase like 2B##BC121116|METTL2B|55798|methyltransferase like 2B##AK299960|METTL2B|55798|methyltransferase like 2B##BC066973|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001012454|FAM71F2|346653|family with sequence similarity 71, member F2##NM_001128926|FAM71F2|346653|family with sequence similarity 71, member F2##BC105729|FAM71F2|346653|family with sequence similarity 71, member F2##BC105730|FAM71F2|346653|family with sequence similarity 71, member F2##BC105731|FAM71F2|346653|family with sequence similarity 71, member F2##BC047310|FAM71F2|346653|family with sequence similarity 71, member F2	0.0	0.0	
chr8	141961956	141962105	reg1011930.p1	4.175	+	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-316406	-	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-440467	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-440638	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	49226	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	176707	+	AK128212 NM_001080431	276642	-	BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4	0.989894	0.0	denovo_WM_7:-28:0.894
chrX	65426089	65426198	reg1008481.p2	4.175	+	NM_001130860 AK311043 AB014598 NM_014799 AY358990 AK307761	-42001	+	TSC_hg19_v1_chrX_+_65382627 BC011561	-43499	+	NM_138737 TSC_hg19_v1_chrX_+_65382512	-43668	+	AX775690 AX775692 AF298812 AX775694 AY152724 CU689984 AB528008 AY358735 AY358736 NM_001242310	409715	-	BC034919 AK296264 AK299018 NM_021783	432743	-	AK314881 NM_001199687	432980	-	NM_001130860|HEPH|9843|hephaestin##AK311043|HEPH|9843|hephaestin##AB014598|HEPH|9843|hephaestin##NM_014799|HEPH|9843|hephaestin##AY358990|HEPH|9843|hephaestin##AK307761|HEPH|9843|hephaestin##BC011561|HEPH|9843|hephaestin##NM_138737|HEPH|9843|hephaestin##AF298812|EDA2R|60401|ectodysplasin A2 receptor##AY152724|EDA2R|60401|ectodysplasin A2 receptor##AY358735|EDA2R|60401|ectodysplasin A2 receptor##AY358736|EDA2R|60401|ectodysplasin A2 receptor##NM_001242310|EDA2R|60401|ectodysplasin A2 receptor##BC034919|EDA2R|60401|ectodysplasin A2 receptor##AK296264|EDA2R|60401|ectodysplasin A2 receptor##AK299018|EDA2R|60401|ectodysplasin A2 receptor##NM_021783|EDA2R|60401|ectodysplasin A2 receptor##AK314881|EDA2R|60401|ectodysplasin A2 receptor##NM_001199687|EDA2R|60401|ectodysplasin A2 receptor	2.880944	0.0	denovo_WM_7:44:0.931	denovo_WM_7:59:0.929	denovo_WM_7:74:0.933
chr15	34625027	34625207	reg1001220.p1	4.174	+	BC126241 BC126243 AF108831 TSC_hg19_v1_chr15_-_34610989 AK315283 NM_005135	-14139	-	TSC_hg19_v1_chr15_+_34517216 AK290524 AK075227 AK296184 BC016348 BC002583 AF151018 NM_016454 AY336092	-107877	+	BC037234 TSC_hg19_v1_chr15_-_34502298 AL833631 AK293695 AK311338 NM_024713	-122816	-	AF105366 AF531258 NM_001042497 NM_133647	3927	-	TSC_hg19_v1_chr15_-_34629950 BC033894 AF477977 AF531259 BC051744 DQ138323 NM_001042494 NM_001042496 BX648195	4846	-	TSC_hg19_v1_chr15_-_34630254 AF531260 AK292550 BC051709 BC070107 NM_001042495	5140	-	BC126241|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC126243|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF108831|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK315283|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_005135|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK290524|TMEM85|51234|transmembrane protein 85##AK075227|TMEM85|51234|transmembrane protein 85##BC016348|TMEM85|51234|transmembrane protein 85##BC002583|TMEM85|51234|transmembrane protein 85##AF151018|TMEM85|51234|transmembrane protein 85##NM_016454|TMEM85|51234|transmembrane protein 85##AY336092|TMEM85|51234|transmembrane protein 85##BC037234|C15orf29|79768|chromosome 15 open reading frame 29##AL833631|C15orf29|79768|chromosome 15 open reading frame 29##AK293695|C15orf29|79768|chromosome 15 open reading frame 29##AK311338|C15orf29|79768|chromosome 15 open reading frame 29##NM_024713|C15orf29|79768|chromosome 15 open reading frame 29##AF105366|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531258|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042497|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_133647|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC033894|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF477977|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531259|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051744|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##DQ138323|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042494|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042496|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BX648195|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AF531260|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##AK292550|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC051709|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##BC070107|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6##NM_001042495|SLC12A6|9990|solute carrier family 12 (potassium/chloride transporters), member 6	0.023761	0.0	
chr17	8767752	8767900	reg1012864.p1	4.174	+	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-65274	-	BC146949 BC146966 BC171861 NM_001128076	-105950	-	BC029224 AK057296 NM_001158261 NM_144681	-119698	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	3158	-	AY725853 AF128881 NM_014308	47990	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	101155	-	BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##BC146949|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC146966|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC171861|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##NM_001128076|SPDYE4|388333|speedy homolog E4 (Xenopus laevis)##BC029224|CCDC42|146849|coiled-coil domain containing 42##AK057296|CCDC42|146849|coiled-coil domain containing 42##NM_001158261|CCDC42|146849|coiled-coil domain containing 42##NM_144681|CCDC42|146849|coiled-coil domain containing 42##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5	1.988973	0.0	denovo_WM_7:26:0.568	denovo_WM_7:27:0.418	denovo_WM_7:41:0.492	denovo_WM_7:42:0.500
chr5	126011946	126012039	reg1013278.p1	4.174	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-44577	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-75360	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-81136	-	NM_005573 BC052951	100323	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	100839	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	100890	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.0	0.996084	CTCF.p2:-19:0.996
chr8	78031572	78031752	reg1010022.p2	4.174	+	NM_001172086 NM_001172087	-118383	-	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	-119253	-	AK131399 TSC_hg19_v1_chr8_+_77765961	-265773	+	NM_006823 NM_181839 S76965	1396673	+	TSC_hg19_v1_chr8_+_79578323 NM_016010 AK024711 AK313723 AF151820 BC009074 BC035905 CU679245	1546658	+	J04156 BC032487 AK226000 BC047698 AK291538 NM_000880 NM_001199886 NM_001199887 NM_001199888	1685986	-	NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##AK131399|ZFHX4|79776|zinc finger homeobox 4##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_016010|FAM164A|51101|family with sequence similarity 164, member A##AK024711|FAM164A|51101|family with sequence similarity 164, member A##AK313723|FAM164A|51101|family with sequence similarity 164, member A##AF151820|FAM164A|51101|family with sequence similarity 164, member A##BC009074|FAM164A|51101|family with sequence similarity 164, member A##BC035905|FAM164A|51101|family with sequence similarity 164, member A##J04156|IL7|3574|interleukin 7##BC032487|IL7|3574|interleukin 7##AK226000|IL7|3574|interleukin 7##BC047698|IL7|3574|interleukin 7##AK291538|IL7|3574|interleukin 7##NM_000880|IL7|3574|interleukin 7##NM_001199886|IL7|3574|interleukin 7##NM_001199887|IL7|3574|interleukin 7##NM_001199888|IL7|3574|interleukin 7	1.982307	0.0	denovo_WM_7:7:0.898	denovo_WM_7:22:0.958
chr1	177787951	177788131	reg1008720.p2	4.173	+	AB051534 AB161694 BC028036 NM_021165	-647460	+	AK296524 TSC_hg19_v1_chr1_+_177140093	-647963	+	TSC_hg19_v1_chr1_-_177134042 AK309094	-653966	-	AB063357 NM_033127 TSC_hg19_v1_chr1_-_177939202	151085	-	BC009106 TSC_hg19_v1_chr1_-_177939393	151329	-	TSC_hg19_v1_chr1_-_178007060 AK092831 BX538051 AB067515	219058	-	AB051534|FAM5B|57795|family with sequence similarity 5, member B##AB161694|FAM5B|57795|family with sequence similarity 5, member B##BC028036|FAM5B|57795|family with sequence similarity 5, member B##NM_021165|FAM5B|57795|family with sequence similarity 5, member B##AK296524|FAM5B|57795|family with sequence similarity 5, member B##AK309094|ASTN1|460|astrotactin 1##AB063357|SEC16B|89866|SEC16 homolog B (S. cerevisiae)##NM_033127|SEC16B|89866|SEC16 homolog B (S. cerevisiae)##BC009106|SEC16B|89866|SEC16 homolog B (S. cerevisiae)##AK092831|LOC730102|730102|quinone oxidoreductase-like protein 2 pseudogene##BX538051|LOC730102|730102|quinone oxidoreductase-like protein 2 pseudogene	0.0	0.0	
chr13	103783351	103783481	reg1010228.p2	4.173	+	NM_000452 U10417	-64221	-	TSC_hg19_v1_chr13_+_103498385 BX647399 AK303558 X69978 AK299758 L20046 D16305 CU689168 DQ891818 DQ895006	-284930	+	AK294708 TSC_hg19_v1_chr13_+_103498254	-285162	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	2334888	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	2335175	+	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	3403933	-	NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BX647399|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK303558|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##X69978|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK299758|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##L20046|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##D16305|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ891818|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ895006|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK294708|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2	0.0	0.0	
chr5	14809912	14809996	reg1006855.p1	4.173	+	TSC_hg19_v1_chr5_+_14664826 BC015392	-145113	+	TSC_hg19_v1_chr5_+_14664772 NM_138348	-145178	+	AK123396 TSC_hg19_v1_chr5_-_14664742	-145227	-	DQ892588 DQ895806 AK222631 AK315012 BC014526 AF274753 AY358503 TSC_hg19_v1_chr5_-_14871888 AL833238 AB046801 BC009835 NM_054027	61901	-	TSC_hg19_v1_chr5_+_15500291 AB020647 NM_012304	690345	+	BC136424 TSC_hg19_v1_chr5_+_15500549	690590	+	BC015392|FAM105B|90268|family with sequence similarity 105, member B##NM_138348|FAM105B|90268|family with sequence similarity 105, member B##AK123396|LOC728178|728178|uncharacterized LOC728178##DQ892588|ANKH|56172|ankylosis, progressive homolog (mouse)##DQ895806|ANKH|56172|ankylosis, progressive homolog (mouse)##AK222631|ANKH|56172|ankylosis, progressive homolog (mouse)##AK315012|ANKH|56172|ankylosis, progressive homolog (mouse)##BC014526|ANKH|56172|ankylosis, progressive homolog (mouse)##AF274753|ANKH|56172|ankylosis, progressive homolog (mouse)##AY358503|ANKH|56172|ankylosis, progressive homolog (mouse)##AB046801|ANKH|56172|ankylosis, progressive homolog (mouse)##BC009835|ANKH|56172|ankylosis, progressive homolog (mouse)##NM_054027|ANKH|56172|ankylosis, progressive homolog (mouse)##AB020647|FBXL7|23194|F-box and leucine-rich repeat protein 7##NM_012304|FBXL7|23194|F-box and leucine-rich repeat protein 7##BC136424|FBXL7|23194|F-box and leucine-rich repeat protein 7	0.0	0.0	
chr6	158006339	158006519	reg1015336.p1	4.173	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-203890	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-261212	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-261845	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	237860	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	237945	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	396458	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.99424	0.0	denovo_WM_7:24:0.331	denovo_WM_7:25:0.331	denovo_WM_7:26:0.331
chr16	46508109	46508239	reg1014816.p2	4.172	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-13246041	+	AL133588 NM_016212	-13246660	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-13302576	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	147098	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	147132	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	214888	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	0.0	0.0	
chr22	29188556	29188683	reg1008396.p2	4.172	+	TSC_hg19_v1_chr22_+_29168732 AK091133 AX746797 AK295140 CR456461 AB528096 CU013012 CU013300 CU691050	-19840	+	TSC_hg19_v1_chr22_+_29168718 BC065549 BC053874 BC040488 AK302925	-19920	+	TSC_hg19_v1_chr22_+_29168630 AK289516 NM_173510	-19975	+	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	7872	-	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	7948	-	TSC_hg19_v1_chr22_+_29196668 AF086143	8064	+	AK091133|CCDC117|150275|coiled-coil domain containing 117##AK295140|CCDC117|150275|coiled-coil domain containing 117##CR456461|CCDC117|150275|coiled-coil domain containing 117##BC065549|CCDC117|150275|coiled-coil domain containing 117##BC053874|CCDC117|150275|coiled-coil domain containing 117##BC040488|CCDC117|150275|coiled-coil domain containing 117##AK302925|CCDC117|150275|coiled-coil domain containing 117##AK289516|CCDC117|150275|coiled-coil domain containing 117##NM_173510|CCDC117|150275|coiled-coil domain containing 117##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1	0.769565	0.0	denovo_WM_7:107:0.751
chr3	71031900	71032064	reg1013360.p2	4.172	+	TSC_hg19_v1_chr3_+_70048883 BC015590	-983094	+	NM_000248 NM_001184968 NM_198158 NM_198178 Z29678 BC012503 BC065243 BC026961 GU355676	-1046171	+	NM_198177 AB006989 AK297858	-1116581	+	TSC_hg19_v1_chr3_-_71114076 AK074569 NM_001244813	82214	-	TSC_hg19_v1_chr3_-_71179732 AK027264	147741	-	AK297649 TSC_hg19_v1_chr3_-_71179738 BX647682	147758	-	NM_000248|MITF|4286|microphthalmia-associated transcription factor##NM_001184968|MITF|4286|microphthalmia-associated transcription factor##NM_198158|MITF|4286|microphthalmia-associated transcription factor##NM_198178|MITF|4286|microphthalmia-associated transcription factor##Z29678|MITF|4286|microphthalmia-associated transcription factor##BC012503|MITF|4286|microphthalmia-associated transcription factor##BC065243|MITF|4286|microphthalmia-associated transcription factor##BC026961|MITF|4286|microphthalmia-associated transcription factor##GU355676|MITF|4286|microphthalmia-associated transcription factor##NM_198177|MITF|4286|microphthalmia-associated transcription factor##AB006989|MITF|4286|microphthalmia-associated transcription factor##AK297858|MITF|4286|microphthalmia-associated transcription factor##AK074569|FOXP1|27086|forkhead box P1##NM_001244813|FOXP1|27086|forkhead box P1##AK027264|FOXP1|27086|forkhead box P1##AK297649|FOXP1|27086|forkhead box P1##BX647682|FOXP1|27086|forkhead box P1	0.483529	0.0	denovo_WM_7:21:0.446
chr8	48677639	48677764	reg1015127.p1	4.172	+	TSC_hg19_v1_chr8_-_48650725 BC023510 BC105109 NM_005195 M83667	-26965	-	EU831483 EU831570 TSC_hg19_v1_chr8_-_48650683	-27017	-	TSC_hg19_v1_chr8_+_48173546 D63480 BC031627 AK293809 AK293972 AK294275 AK297681	-504161	+	TSC_hg19_v1_chr8_-_48872697 AK296833	194988	-	TSC_hg19_v1_chr8_-_48872710 U34994 NM_001081640 NM_006904 U47077	195026	-	NM_005914 NM_182746	195061	+	BC105109|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##NM_005195|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##M83667|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##EU831483|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##EU831570|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##D63480|KIAA0146|23514|KIAA0146##AK293809|KIAA0146|23514|KIAA0146##AK293972|KIAA0146|23514|KIAA0146##AK294275|KIAA0146|23514|KIAA0146##AK297681|KIAA0146|23514|KIAA0146##AK296833|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##U34994|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_001081640|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_006904|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##U47077|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_005914|MCM4|4173|minichromosome maintenance complex component 4##NM_182746|MCM4|4173|minichromosome maintenance complex component 4	0.0	0.0	
chr14	50426870	50426968	reg1004007.p1	4.171	+	TSC_hg19_v1_chr14_+_50360369 AF047432 AB463401 AF493885 BT019868 CR541939 CR541964	-66513	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	-67086	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	-67101	+	AK091232 AX746864 NM_001012706	47318	-	AF390030 NM_001014830	132441	-	AK129564 TSC_hg19_v1_chr14_-_50583291 BX247997 BC027585 AK023982 NM_001040662 NM_024558 BC105118 BC143673 BC143674	156351	-	AF047432|ARF6|382|ADP-ribosylation factor 6##AF493885|ARF6|382|ADP-ribosylation factor 6##BT019868|ARF6|382|ADP-ribosylation factor 6##CR541939|ARF6|382|ADP-ribosylation factor 6##CR541964|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##AK091232|C14orf182|283551|chromosome 14 open reading frame 182##NM_001012706|C14orf182|283551|chromosome 14 open reading frame 182##AF390030|C14orf183|196913|chromosome 14 open reading frame 183##NM_001014830|C14orf183|196913|chromosome 14 open reading frame 183##AK129564|METTL21D|79609|methyltransferase like 21D##BX247997|METTL21D|79609|methyltransferase like 21D##BC027585|METTL21D|79609|methyltransferase like 21D##AK023982|METTL21D|79609|methyltransferase like 21D##NM_001040662|METTL21D|79609|methyltransferase like 21D##NM_024558|METTL21D|79609|methyltransferase like 21D##BC105118|METTL21D|79609|methyltransferase like 21D##BC143673|METTL21D|79609|methyltransferase like 21D##BC143674|METTL21D|79609|methyltransferase like 21D	0.0	0.0	
chr15	93449995	93450109	reg1008132.p2	4.171	+	AK295909 TSC_hg19_v1_chr15_+_93447798	-2292	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	-6472	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	-6566	+	AL390083 TSC_hg19_v1_chr15_-_93616347	166276	-	TSC_hg19_v1_chr15_-_93616364 AK074966 BC015886 NM_001166286	166321	-	AK309814 AK125204 NM_001166288 NM_001166289	166862	-	AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##AL390083|RGMA|56963|RGM domain family, member A##AK074966|RGMA|56963|RGM domain family, member A##BC015886|RGMA|56963|RGM domain family, member A##NM_001166286|RGMA|56963|RGM domain family, member A##AK309814|RGMA|56963|RGM domain family, member A##AK125204|RGMA|56963|RGM domain family, member A##NM_001166288|RGMA|56963|RGM domain family, member A##NM_001166289|RGMA|56963|RGM domain family, member A	0.0	0.0	
chr16	67260904	67261084	reg1012397.p1	4.171	+	NM_001004055 AF176701 AK316602 AK298088	-80	-	BC018785 NM_012163	-274	-	AK056923 AK300976 NM_024712 TSC_hg19_v1_chr16_+_67233033	-27961	+	TSC_hg19_v1_chr16_+_67261032 AF161519 NM_014187 BC003080 BC021109 BC013412	58	+	AY192154 AF113615 TSC_hg19_v1_chr16_-_67281385 AB209584 BC033084 AK304232	20354	-	TSC_hg19_v1_chr16_-_67281395 AB041046	20400	-	NM_001004055|LRRC29|26231|leucine rich repeat containing 29##AF176701|LRRC29|26231|leucine rich repeat containing 29##AK316602|LRRC29|26231|leucine rich repeat containing 29##AK298088|LRRC29|26231|leucine rich repeat containing 29##BC018785|LRRC29|26231|leucine rich repeat containing 29##NM_012163|LRRC29|26231|leucine rich repeat containing 29##AK056923|ELMO3|79767|engulfment and cell motility 3##AK300976|ELMO3|79767|engulfment and cell motility 3##NM_024712|ELMO3|79767|engulfment and cell motility 3##AF161519|TMEM208|29100|transmembrane protein 208##NM_014187|TMEM208|29100|transmembrane protein 208##BC003080|TMEM208|29100|transmembrane protein 208##BC021109|TMEM208|29100|transmembrane protein 208##BC013412|TMEM208|29100|transmembrane protein 208##AY192154|FHOD1|29109|formin homology 2 domain containing 1##AF113615|FHOD1|29109|formin homology 2 domain containing 1##AB209584|FHOD1|29109|formin homology 2 domain containing 1##BC033084|FHOD1|29109|formin homology 2 domain containing 1##AK304232|FHOD1|29109|formin homology 2 domain containing 1##AB041046|FHOD1|29109|formin homology 2 domain containing 1	0.0	0.0	
chr2	102612938	102613040	reg1012928.p1	4.171	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-4626	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-104457	+	TSC_hg19_v1_chr2_+_102508334 BC045694	-104647	+	BC027733 BC012346 NM_173343	2468	+	TSC_hg19_v1_chr2_+_102759205 X16896	146243	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	157431	+	BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC045694|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I	0.995058	0.0	
chr22	39473182	39473267	reg1011007.p2	4.171	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	-37	+	AK294810 NM_001006666 NM_145298	-36584	+	NM_152426 TSC_hg19_v1_chr22_+_39417130	-56097	+	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	20046	+	TSC_hg19_v1_chr22_-_39529023 BC128418	55823	-	DQ064603 AB528611 EU446785 CU690844 BC051773 TSC_hg19_v1_chr22_-_39548584 NM_175709 AK124408	75343	-	AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK294810|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_001006666|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_145298|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_152426|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC128418|CBX7|23492|chromobox homolog 7##DQ064603|CBX7|23492|chromobox homolog 7##EU446785|CBX7|23492|chromobox homolog 7##BC051773|CBX7|23492|chromobox homolog 7##NM_175709|CBX7|23492|chromobox homolog 7	0.0	0.0	
chr2	37763012	37763125	reg1012182.p1	4.171	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-191255	+	BC030706 BC012820 AB015982 NM_005813	-218875	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-304222	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	135711	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	136321	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	389364	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	1.037134	0.0	denovo_WM_7:-52:0.944
chr4	146729561	146729741	reg1002199.p4	4.171	+	NM_001080531	-128296	+	TSC_hg19_v1_chr4_+_146540536 AK126662 NM_172250	-189105	+	U59912 NM_001003688 U54826 AK293055	-325693	+	TSC_hg19_v1_chr4_-_146859580 AK091130 AX746796 NM_178835 BC117407 BC143577 AF450485 AK225805	130026	-	BC033879 TSC_hg19_v1_chr4_-_146859976	130317	-	NM_007080 TSC_hg19_v1_chr4_+_147096887 BC016026 BC019894 AJ238098 AF182292 AK312126	367216	+	NM_001080531|C4orf51|646603|chromosome 4 open reading frame 51##AK126662|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##NM_172250|MMAA|166785|methylmalonic aciduria (cobalamin deficiency) cblA type##U59912|SMAD1|4086|SMAD family member 1##NM_001003688|SMAD1|4086|SMAD family member 1##U54826|SMAD1|4086|SMAD family member 1##AK293055|SMAD1|4086|SMAD family member 1##AK091130|ZNF827|152485|zinc finger protein 827##NM_178835|ZNF827|152485|zinc finger protein 827##BC117407|ZNF827|152485|zinc finger protein 827##BC143577|ZNF827|152485|zinc finger protein 827##AF450485|ZNF827|152485|zinc finger protein 827##AK225805|ZNF827|152485|zinc finger protein 827##NM_007080|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC016026|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC019894|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238098|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182292|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312126|LSM6|11157|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.0	0.0	
chr5	142398785	142398926	reg1015718.p1	4.171	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-248547	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-248883	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-321284	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	383968	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	384251	-	BC015610 TSC_hg19_v1_chr5_-_142783214	384356	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.015386	0.0	
chr7	73679635	73679726	reg1011465.p2	4.171	+	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	-10944	-	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	-10969	-	TSC_hg19_v1_chr7_+_73624361 AF252613	-55326	+	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	24107	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	188484	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	188628	+	NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AF252613|LAT2|7462|linker for activation of T cells family, member 2##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1	0.999414	0.0	
chr12	85817715	85817885	reg1008397.p1	4.170	+	U31986 TSC_hg19_v1_chr12_+_85673999 BC010923 NM_006982	-143841	+	AK022365 NM_001079910 BC005399 BC093088 AK307799	-387677	+	AK126325 NM_001100917	-387746	-	DQ890787 DQ893943 AF056209 TSC_hg19_v1_chr12_-_86230094 BC031589	412245	-	AK022089 TSC_hg19_v1_chr12_-_86230188 NM_005447	412437	-	AK312066 NM_006183 BC010918 AF157682 U91618 AB587429 CR541936 CU679849	450326	+	U31986|ALX1|8092|ALX homeobox 1##BC010923|ALX1|8092|ALX homeobox 1##NM_006982|ALX1|8092|ALX homeobox 1##AK022365|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##NM_001079910|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##BC005399|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##BC093088|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##AK307799|LRRIQ1|84125|leucine-rich repeats and IQ motif containing 1##AK126325|TSPAN19|144448|tetraspanin 19##NM_001100917|TSPAN19|144448|tetraspanin 19##DQ890787|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##DQ893943|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AF056209|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##BC031589|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AK022089|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##NM_005447|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AK312066|NTS|4922|neurotensin##NM_006183|NTS|4922|neurotensin##BC010918|NTS|4922|neurotensin##AF157682|NTS|4922|neurotensin##U91618|NTS|4922|neurotensin##CR541936|NTS|4922|neurotensin	0.0	0.0	
chr15	74692937	74693107	reg1012095.p1	4.170	+	AB528448 DQ891578 DQ894771 CU689338 M14565 BC032329 TSC_hg19_v1_chr15_-_74659988 AK225715 AK292300 AK293204 AK293211 AK300178 AK310362 NM_000781	-33019	-	AK292301 AK056794 NM_001099773 TSC_hg19_v1_chr15_-_74658572	-34487	-	AK290709 AK310852 AK026821 NM_182791 BC025689 CU693014	-82117	+	NM_001146030 TSC_hg19_v1_chr15_-_74726050	33007	-	AF071542 AM180445 AM180446 AM180447 AM180448 AM180449 AM180450 AM180451 TSC_hg19_v1_chr15_-_74726300 AF030698 AF069493 BC101643 BC101647 AK293280 AK312257 NM_001146029 NM_003612	33290	-	AY037166 BC033919 BC007913 TSC_hg19_v1_chr15_-_74753464	60425	-	DQ891578|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##DQ894771|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##M14565|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##BC032329|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK225715|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK292300|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK293204|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK293211|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK300178|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK310362|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##NM_000781|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK292301|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK056794|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##NM_001099773|CYP11A1|1583|cytochrome P450, family 11, subfamily A, polypeptide 1##AK290709|CCDC33|80125|coiled-coil domain containing 33##AK310852|CCDC33|80125|coiled-coil domain containing 33##AK026821|CCDC33|80125|coiled-coil domain containing 33##NM_182791|CCDC33|80125|coiled-coil domain containing 33##BC025689|CCDC33|80125|coiled-coil domain containing 33##NM_001146030|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF071542|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180445|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180446|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180447|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180448|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180449|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180450|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AM180451|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF030698|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AF069493|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##BC101643|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##BC101647|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AK293280|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AK312257|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_001146029|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##NM_003612|SEMA7A|8482|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)##AY037166|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##BC033919|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)##BC007913|UBL7|84993|ubiquitin-like 7 (bone marrow stromal cell-derived)	0.999617	0.0	denovo_WM_7:-35:0.842
chr15	86262002	86262112	reg1012958.p1	4.170	+	AF127481 NM_144767	-41790	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	-338166	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-595739	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	76040	-	TSC_hg19_v1_chr15_-_86338178 NM_022480	76138	-	NM_152336	423184	+	NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)##NM_022480|KLHL25|64410|kelch-like 25 (Drosophila)##NM_152336|AGBL1|123624|ATP/GTP binding protein-like 1	1.23875	0.0	denovo_WM_7:81:0.618	denovo_WM_7:-82:0.248
chr5	159772473	159772609	reg1014948.p2	4.170	+	AK294000 TSC_hg19_v1_chr5_-_159739572 BC035871 NM_024565 AK302823	-32997	-	NM_001445 X90908 U19869 CU692652	-116042	+	NM_001040442 AB528665	-146461	+	TSC_hg19_v1_chr5_-_159797619 BC054506 BC011699 AF329836 AB590457 AY358839 NM_031908	25091	-	BC032603 TSC_hg19_v1_chr5_-_159827053 NM_022090	54542	-	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	73564	-	AK294000|CCNJL|79616|cyclin J-like##BC035871|CCNJL|79616|cyclin J-like##NM_024565|CCNJL|79616|cyclin J-like##AK302823|CCNJL|79616|cyclin J-like##NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##BC054506|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC011699|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AF329836|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AY358839|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##NM_031908|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC032603|C5orf54|63920|chromosome 5 open reading frame 54##NM_022090|C5orf54|63920|chromosome 5 open reading frame 54##AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)	0.0	0.262747	CTCF.p2:-11:0.263
chrX	114381929	114382027	reg1015807.p1	4.170	+	X95302 AK308523 GQ494004 U70981 AK291957 NM_000640 Y08768 AK309444	-129804	-	NM_000868 U49516 BC028688 AK295753 TSC_hg19_v1_chrX_+_113818558 M81778	-563406	+	TSC_hg19_v1_chrX_-_112084116 AF286598 NM_133265 AK301573	-2297916	-	NM_001145346 AK301904	41997	+	AB587552 TSC_hg19_v1_chrX_-_114468623 BC125223 BC125224 BX647193 NM_001243963 NM_020871	86641	-	NM_016383 AK093369 AX748081 AK314765 AF124430 BC128134 BC128135	142327	+	X95302|IL13RA2|3598|interleukin 13 receptor, alpha 2##AK308523|IL13RA2|3598|interleukin 13 receptor, alpha 2##GQ494004|IL13RA2|3598|interleukin 13 receptor, alpha 2##U70981|IL13RA2|3598|interleukin 13 receptor, alpha 2##AK291957|IL13RA2|3598|interleukin 13 receptor, alpha 2##NM_000640|IL13RA2|3598|interleukin 13 receptor, alpha 2##Y08768|IL13RA2|3598|interleukin 13 receptor, alpha 2##AK309444|IL13RA2|3598|interleukin 13 receptor, alpha 2##NM_000868|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##U49516|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##BC028688|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##AK295753|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##M81778|HTR2C|3358|5-hydroxytryptamine (serotonin) receptor 2C##AF286598|AMOT|154796|angiomotin##NM_133265|AMOT|154796|angiomotin##AK301573|AMOT|154796|angiomotin##NM_001145346|RBMXL3|139804|RNA binding motif protein, X-linked-like 3##AK301904|RBMXL3|139804|RNA binding motif protein, X-linked-like 3##BC125223|LRCH2|57631|leucine-rich repeats and calponin homology (CH) domain containing 2##BC125224|LRCH2|57631|leucine-rich repeats and calponin homology (CH) domain containing 2##BX647193|LRCH2|57631|leucine-rich repeats and calponin homology (CH) domain containing 2##NM_001243963|LRCH2|57631|leucine-rich repeats and calponin homology (CH) domain containing 2##NM_020871|LRCH2|57631|leucine-rich repeats and calponin homology (CH) domain containing 2##NM_016383|LUZP4|51213|leucine zipper protein 4##AK093369|LUZP4|51213|leucine zipper protein 4##AK314765|LUZP4|51213|leucine zipper protein 4##AF124430|LUZP4|51213|leucine zipper protein 4##BC128134|LUZP4|51213|leucine zipper protein 4##BC128135|LUZP4|51213|leucine zipper protein 4	0.0	0.216589	CTCF.p2:4:0.217
chr1	23903657	23903748	reg1001143.p1	4.169	+	NM_002167 X69111	-17418	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-17718	-	L22846 NM_004091	-45991	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	114578	+	TSC_hg19_v1_chr1_+_24018295 BC018970	114597	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	166202	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.0	0.0	
chr15	38534327	38534449	reg1013068.p1	4.169	+	BC029221 NM_152453	-306932	+	TSC_hg19_v1_chr15_-_37393466 BC050431 NM_001220482 NM_002399 BC001516 BC001844 BC007202 AK300247	-1140946	-	TSC_hg19_v1_chr15_-_37392751 AK056216 NM_170674 NM_170675 NM_170676 NM_170677	-1141832	-	TSC_hg19_v1_chr15_+_38544515 AK091222 AX746859 BC137480 BC137481	10007	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	10634	+	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	211957	+	BC029221|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_152453|TMCO5A|145942|transmembrane and coiled-coil domains 5A##BC050431|MEIS2|4212|Meis homeobox 2##NM_001220482|MEIS2|4212|Meis homeobox 2##NM_002399|MEIS2|4212|Meis homeobox 2##BC001516|MEIS2|4212|Meis homeobox 2##BC001844|MEIS2|4212|Meis homeobox 2##BC007202|MEIS2|4212|Meis homeobox 2##AK300247|MEIS2|4212|Meis homeobox 2##AK056216|MEIS2|4212|Meis homeobox 2##NM_170674|MEIS2|4212|Meis homeobox 2##NM_170675|MEIS2|4212|Meis homeobox 2##NM_170676|MEIS2|4212|Meis homeobox 2##NM_170677|MEIS2|4212|Meis homeobox 2##AK091222|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137480|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137481|SPRED1|161742|sprouty-related, EVH1 domain containing 1##NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B	0.0	0.0	
chr15	80355792	80355924	reg1012266.p1	4.169	+	TSC_hg19_v1_chr15_+_80352501 NM_001242914	-3358	+	TSC_hg19_v1_chr15_+_80352274 NM_001242913	-3535	+	TSC_hg19_v1_chr15_+_80352046 AL136598	-3791	+	NM_001242915 NM_001242916 AF261138 AJ251095	9068	+	NM_001242919	34899	+	TSC_hg19_v1_chr15_+_80445130 AK297965	89274	+	NM_001242914|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242913|ZFAND6|54469|zinc finger, AN1-type domain 6##AL136598|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242915|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242916|ZFAND6|54469|zinc finger, AN1-type domain 6##AF261138|ZFAND6|54469|zinc finger, AN1-type domain 6##AJ251095|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242919|ZFAND6|54469|zinc finger, AN1-type domain 6##AK297965|FAH|2184|fumarylacetoacetate hydrolase (fumarylacetoacetase)	0.99174	0.0	denovo_WM_7:50:0.331	denovo_WM_7:51:0.331	denovo_WM_7:52:0.331
chr16	25045086	25045218	reg1009036.p1	4.169	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-18460	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-18540	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-76260	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	33137	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	77909	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	78045	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	1.260724	0.0	denovo_WM_7:-91:0.271	denovo_WM_7:-106:0.328
chr19	56592150	56592272	reg1015118.p1	4.169	+	AB527195 AY054986 AY154460 NM_153447	-81121	+	NM_176811 AB527377 AY154463	-132979	+	AB527194 AY154468 NM_176810	-148523	-	TSC_hg19_v1_chr19_-_56632629 BC037737	40403	-	TSC_hg19_v1_chr19_-_56632646 BC012495 BC077728 NM_001002836	40435	-	TSC_hg19_v1_chr19_+_56652664 NM_001253792 NM_018337 AL834130 AK223408	60394	+	AY054986|NLRP5|126206|NLR family, pyrin domain containing 5##AY154460|NLRP5|126206|NLR family, pyrin domain containing 5##NM_153447|NLRP5|126206|NLR family, pyrin domain containing 5##NM_176811|NLRP8|126205|NLR family, pyrin domain containing 8##AY154463|NLRP8|126205|NLR family, pyrin domain containing 8##AY154468|NLRP13|126204|NLR family, pyrin domain containing 13##NM_176810|NLRP13|126204|NLR family, pyrin domain containing 13##BC037737|ZNF787|126208|zinc finger protein 787##BC012495|ZNF787|126208|zinc finger protein 787##BC077728|ZNF787|126208|zinc finger protein 787##NM_001002836|ZNF787|126208|zinc finger protein 787##NM_001253792|ZNF444|55311|zinc finger protein 444##NM_018337|ZNF444|55311|zinc finger protein 444##AL834130|ZNF444|55311|zinc finger protein 444##AK223408|ZNF444|55311|zinc finger protein 444	0.0	0.0	CTCF.p2:-107:0.977
chr2	12570979	12571137	reg1002726.p1	4.169	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-684283	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-760767	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-888215	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	286195	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	286858	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	287339	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.0	0.0	
chr4	39047067	39047139	reg1003819.p1	4.169	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-665	+	BC030803 BC060512 AK026888 NM_024943	-13093	-	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-177712	+	AK289785 NM_015990 NM_199039	16748	+	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	136992	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	320849	-	NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa	0.084006	0.0	
chr5	17317191	17317320	reg1010482.p1	4.169	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-99415	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-99643	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-380870	-	AK295087 BC031051 NM_001167667 NM_004934	2671067	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4142354	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4142393	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.0	0.0	
chr12	99727532	99727642	reg1012021.p1	4.168	+	AK294191 NM_001204067	-178720	-	BC026313 AF164792 BC142669 BC150204 AK289768 NM_001204068 NM_001204069 NM_001204070 NM_020140 NM_181670 BC068451 NM_001204066	-179030	-	AY356353 AK315954 AM980945 AK294994 TSC_hg19_v1_chr12_-_99288638 AK295988 NM_001204065 NM_001204079 NM_001204080 NM_001204081	-439000	-	NM_153364 AK312767 BC031221	313943	+	NM_152788	650844	-	BC127017 AK125813 TSC_hg19_v1_chr12_-_100536637 BC014891	808962	-	AK294191|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204067|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC026313|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AF164792|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC142669|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC150204|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK289768|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204068|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204069|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204070|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_020140|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_181670|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC068451|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204066|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AY356353|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK315954|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AM980945|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK294994|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK295988|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204065|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204079|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204080|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204081|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_153364|FAM71C|196472|family with sequence similarity 71, member C##AK312767|FAM71C|196472|family with sequence similarity 71, member C##BC031221|FAM71C|196472|family with sequence similarity 71, member C##NM_152788|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC127017|UHRF1BP1L|23074|UHRF1 binding protein 1-like##AK125813|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC014891|UHRF1BP1L|23074|UHRF1 binding protein 1-like	0.998199	0.041841	
chr16	46808999	46809168	reg1003450.p2	4.168	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-26921	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-85486	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-85518	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	56005	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	109198	+	NM_001142466 AK094971	110019	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.0	0.0	
chr17	52572785	52572933	reg1013294.p1	4.168	+	NM_032559 AK057272 AF333335 BC033802 AK302262 AK308265 CU689754	-672544	+	NM_001243552	-1509980	+	BC029865 TSC_hg19_v1_chr17_-_50237384 AF288385 NM_001082534	-2335496	-	TSC_hg19_v1_chr17_+_52978217 NM_005486 AK001893 AK309164 AK225351 AJ010071 AK303912 AK300823 AK303913 AK315039 AK315907 AK223125 BC029396 AB590855	405297	+	TSC_hg19_v1_chr17_-_53046016 AK293851 CR541837 DQ893136 DQ896418 AF044321 BC005895 AK295381 NM_001162861 NM_001162862 NM_004375	473158	-	TSC_hg19_v1_chr17_+_53046125 AK122865 NM_178509 BC125116 BC041485	473268	+	NM_032559|KIF2B|84643|kinesin family member 2B##AK057272|KIF2B|84643|kinesin family member 2B##AF333335|KIF2B|84643|kinesin family member 2B##BC033802|KIF2B|84643|kinesin family member 2B##AK302262|KIF2B|84643|kinesin family member 2B##NM_001243552|LOC100506650|100506650|uncharacterized LOC100506650##BC029865|CA10|56934|carbonic anhydrase X##AF288385|CA10|56934|carbonic anhydrase X##NM_001082534|CA10|56934|carbonic anhydrase X##NM_005486|TOM1L1|10040|target of myb1 (chicken)-like 1##AK001893|TOM1L1|10040|target of myb1 (chicken)-like 1##AK309164|TOM1L1|10040|target of myb1 (chicken)-like 1##AK225351|TOM1L1|10040|target of myb1 (chicken)-like 1##AJ010071|TOM1L1|10040|target of myb1 (chicken)-like 1##AK303912|TOM1L1|10040|target of myb1 (chicken)-like 1##AK300823|TOM1L1|10040|target of myb1 (chicken)-like 1##AK303913|TOM1L1|10040|target of myb1 (chicken)-like 1##AK315039|TOM1L1|10040|target of myb1 (chicken)-like 1##AK315907|TOM1L1|10040|target of myb1 (chicken)-like 1##AK223125|TOM1L1|10040|target of myb1 (chicken)-like 1##BC029396|TOM1L1|10040|target of myb1 (chicken)-like 1##AK293851|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##CR541837|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##DQ893136|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##DQ896418|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AF044321|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##BC005895|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AK295381|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_001162861|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_001162862|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_004375|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AK122865|STXBP4|252983|syntaxin binding protein 4##NM_178509|STXBP4|252983|syntaxin binding protein 4##BC125116|STXBP4|252983|syntaxin binding protein 4##BC041485|STXBP4|252983|syntaxin binding protein 4	0.036731	0.0	
chr19	1030625	1030732	reg1013459.p1	4.168	+	AK024835 AK057960 AK293171 TSC_hg19_v1_chr19_+_1026627 BC141818 BC141833 D83735 AK222924 AK300788 D86059 BC148264 CR541810 CR541831 AY927510 AY927514	-4016	+	TSC_hg19_v1_chr19_+_1026625 AK297774	-4054	+	TSC_hg19_v1_chr19_+_1026609 AK126391	-4068	+	TSC_hg19_v1_chr19_+_1040105 NM_019112	9414	+	AK310127 TSC_hg19_v1_chr19_+_1040114 AK301108 AK310909	9456	+	TSC_hg19_v1_chr19_+_1067170 BC065223 NM_012292	36465	+	AK024835|CNN2|1265|calponin 2##AK057960|CNN2|1265|calponin 2##AK293171|CNN2|1265|calponin 2##BC141818|CNN2|1265|calponin 2##BC141833|CNN2|1265|calponin 2##D83735|CNN2|1265|calponin 2##AK222924|CNN2|1265|calponin 2##AK300788|CNN2|1265|calponin 2##D86059|CNN2|1265|calponin 2##BC148264|CNN2|1265|calponin 2##CR541810|CNN2|1265|calponin 2##CR541831|CNN2|1265|calponin 2##AY927514|CNN2|1265|calponin 2##AK297774|CNN2|1265|calponin 2##AK126391|CNN2|1265|calponin 2##NM_019112|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310127|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK301108|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310909|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##BC065223|HMHA1|23526|histocompatibility (minor) HA-1##NM_012292|HMHA1|23526|histocompatibility (minor) HA-1	0.979335	0.0	denovo_WM_7:-45:0.963
chr19	8227292	8227388	reg1009307.p1	4.168	+	AB384635 AB053450 BC153882 NM_032447	-14965	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-109393	+	AK292662 NM_001201359 NM_005624	-109695	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	46908	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	145869	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	158917	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.988666	0.0	denovo_WM_7:17:0.989
chr1	155517059	155517191	reg1005043.p3	4.167	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-222833	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-223183	-	BC052277 NM_001105205	-223398	+	AF257305 TSC_hg19_v1_chr1_-_155532251	15081	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	15242	-	TSC_hg19_v1_chr1_-_155532562 AK307595	15456	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.999472	0.0	denovo_WM_7:-48:0.964
chr13	50070875	50071055	reg1013211.p2	4.167	+	NM_001040444 AK225986	-436	+	AB011031 TSC_hg19_v1_chr13_+_50070102 AK026228 AK300410 BC017212 AB527905 DQ891958 DQ895148	-849	+	AK293242 NM_001040443	-1193	+	AL833821 TSC_hg19_v1_chr13_-_50159688 AJ319660 AF334406	88700	-	TSC_hg19_v1_chr13_-_50159706 BC038104 AK096654 NM_018191	88759	-	AF441378 NM_138450	131469	+	NM_001040444|PHF11|51131|PHD finger protein 11##AK225986|PHF11|51131|PHD finger protein 11##AB011031|PHF11|51131|PHD finger protein 11##AK026228|PHF11|51131|PHD finger protein 11##AK300410|PHF11|51131|PHD finger protein 11##BC017212|PHF11|51131|PHD finger protein 11##DQ891958|PHF11|51131|PHD finger protein 11##DQ895148|PHF11|51131|PHD finger protein 11##AK293242|PHF11|51131|PHD finger protein 11##NM_001040443|PHF11|51131|PHD finger protein 11##AL833821|RCBTB1|55213|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1##AJ319660|RCBTB1|55213|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1##AF334406|RCBTB1|55213|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1##BC038104|RCBTB1|55213|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1##AK096654|RCBTB1|55213|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1##NM_018191|RCBTB1|55213|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1##AF441378|ARL11|115761|ADP-ribosylation factor-like 11##NM_138450|ARL11|115761|ADP-ribosylation factor-like 11	0.998675	0.0	
chr19	10510110	10510220	reg1015300.p2	4.167	+	TSC_hg19_v1_chr19_-_10491245 AK308360 NM_003331 AK303627 AK308379	-18886	-	TSC_hg19_v1_chr19_-_10491192 X54637 AK222672 BC014243	-18974	-	AF340060 AF340061 AB463787 BC040123 S50015 AK309643 BC058903 X69819 TSC_hg19_v1_chr19_-_10450307 AK301071 AX746321 X69711 BC034409 BC046121 AK312826 AK226023 NM_002162	-59856	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	4004	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	4048	-	TSC_hg19_v1_chr19_-_10514250 NM_007065	4091	-	AK308360|TYK2|7297|tyrosine kinase 2##NM_003331|TYK2|7297|tyrosine kinase 2##AK303627|TYK2|7297|tyrosine kinase 2##AK308379|TYK2|7297|tyrosine kinase 2##X54637|TYK2|7297|tyrosine kinase 2##AK222672|TYK2|7297|tyrosine kinase 2##BC014243|TYK2|7297|tyrosine kinase 2##AF340060|ICAM3|3385|intercellular adhesion molecule 3##AF340061|ICAM3|3385|intercellular adhesion molecule 3##BC040123|ICAM3|3385|intercellular adhesion molecule 3##S50015|ICAM3|3385|intercellular adhesion molecule 3##AK309643|ICAM3|3385|intercellular adhesion molecule 3##BC058903|ICAM3|3385|intercellular adhesion molecule 3##X69819|ICAM3|3385|intercellular adhesion molecule 3##AX746321|ICAM3|3385|intercellular adhesion molecule 3##X69711|ICAM3|3385|intercellular adhesion molecule 3##BC034409|ICAM3|3385|intercellular adhesion molecule 3##BC046121|ICAM3|3385|intercellular adhesion molecule 3##AK312826|ICAM3|3385|intercellular adhesion molecule 3##AK226023|ICAM3|3385|intercellular adhesion molecule 3##NM_002162|ICAM3|3385|intercellular adhesion molecule 3##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)	0.993231	0.0	
chr2	206950848	206951028	reg1002473.p2	4.167	+	TSC_hg19_v1_chr2_-_206950902 AK096585 NM_017759	-27	-	TSC_hg19_v1_chr2_+_206547371 AK290934	-403577	+	TSC_hg19_v1_chr2_+_206547224 AK130198 AL833606 NM_003872 NM_018534 NM_201264 NM_201266 NM_201267 NM_201279 BX537423	-403760	+	AK295987 NM_001199984	72979	-	X61100 AK098395 BC018900 BC022368 TSC_hg19_v1_chr2_-_207024145 AK300585 BC030833 AK295705 AK295966 AK298320 BC004133 NM_001199981 NM_001199982 NM_001199983 NM_005006	73234	-	NM_001037663 NM_001959 NM_021121 TSC_hg19_v1_chr2_+_207024320	73380	+	AK096585|INO80D|54891|INO80 complex subunit D##NM_017759|INO80D|54891|INO80 complex subunit D##AK290934|NRP2|8828|neuropilin 2##AK130198|NRP2|8828|neuropilin 2##AL833606|NRP2|8828|neuropilin 2##NM_003872|NRP2|8828|neuropilin 2##NM_018534|NRP2|8828|neuropilin 2##NM_201264|NRP2|8828|neuropilin 2##NM_201266|NRP2|8828|neuropilin 2##NM_201267|NRP2|8828|neuropilin 2##NM_201279|NRP2|8828|neuropilin 2##BX537423|NRP2|8828|neuropilin 2##AK295987|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199984|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##X61100|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK098395|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC018900|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC022368|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK300585|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC030833|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295705|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295966|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK298320|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC004133|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199981|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199982|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199983|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_005006|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001037663|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##NM_001959|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##NM_021121|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2	0.0	0.0	
chr12	100536830	100536930	reg1006337.p1	4.166	+	TSC_hg19_v1_chr12_-_100536644 NM_001006947 NM_015054	-232	-	BC127017 AK125813 TSC_hg19_v1_chr12_-_100536637 BC014891	-331	-	NM_152788	-158449	-	TSC_hg19_v1_chr12_+_100594593 BC015107 NM_022496 AF161399 AK222959 AB038229 AF212251 BC050679 AK023495 AK023684 AK296991 AF175226 CU677213	57715	+	BC015117 TSC_hg19_v1_chr12_-_100660855 BC039480 AK090824 AX746635 BC100927 BC100928 BC100929 BC100930 NM_152317	123932	-	TSC_hg19_v1_chr12_+_100661023 AK000936 BC011525	124120	+	NM_001006947|UHRF1BP1L|23074|UHRF1 binding protein 1-like##NM_015054|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC127017|UHRF1BP1L|23074|UHRF1 binding protein 1-like##AK125813|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC014891|UHRF1BP1L|23074|UHRF1 binding protein 1-like##NM_152788|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC015107|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##NM_022496|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AF161399|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK222959|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AB038229|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AF212251|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##BC050679|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK023495|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK023684|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AK296991|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##AF175226|ACTR6|64431|ARP6 actin-related protein 6 homolog (yeast)##BC015117|DEPDC4|120863|DEP domain containing 4##BC039480|DEPDC4|120863|DEP domain containing 4##AK090824|DEPDC4|120863|DEP domain containing 4##BC100927|DEPDC4|120863|DEP domain containing 4##BC100928|DEPDC4|120863|DEP domain containing 4##BC100929|DEPDC4|120863|DEP domain containing 4##BC100930|DEPDC4|120863|DEP domain containing 4##NM_152317|DEPDC4|120863|DEP domain containing 4##AK000936|SCYL2|55681|SCY1-like 2 (S. cerevisiae)##BC011525|SCYL2|55681|SCY1-like 2 (S. cerevisiae)	0.876999	0.597592	CTCF.p2:1:0.598
chr15	59705149	59705329	reg1001692.p2	4.166	+	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	-40169	-	TSC_hg19_v1_chr15_-_59665065 AK291688	-40173	-	AB290177 TSC_hg19_v1_chr15_-_59665055	-40185	-	TSC_hg19_v1_chr15_+_59730403 BC022537 NM_152450 AK299220 AK307975	25111	+	TSC_hg19_v1_chr15_+_59903981 NM_004751 EF152283	198744	+	TSC_hg19_v1_chr15_+_59904093 BC017032	198867	+	BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##AB290177|MYO1E|4643|myosin IE##BC022537|FAM81A|145773|family with sequence similarity 81, member A##NM_152450|FAM81A|145773|family with sequence similarity 81, member A##AK299220|FAM81A|145773|family with sequence similarity 81, member A##AK307975|FAM81A|145773|family with sequence similarity 81, member A##NM_004751|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type##EF152283|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type##BC017032|GCNT3|9245|glucosaminyl (N-acetyl) transferase 3, mucin type	0.0	0.0	
chr1	89439388	89439507	reg1015319.p2	4.166	+	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	-82174	-	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	-82236	-	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	-289352	+	TSC_hg19_v1_chr1_-_89458288 AL833593 BC012942 CR627392 AK301326 AK315917 AK057176 AY028624	18912	-	NM_001008661 NM_001008662 NM_001162536 NM_019610	19195	-	JF927951 BC140837 BC144650 BC063819 CR936758 AK001823 BC017992 AK309096 AL136680 CR936755 NM_018284	49033	-	AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AL833593|CCBL2|56267|cysteine conjugate-beta lyase 2##BC012942|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##CR627392|CCBL2|56267|cysteine conjugate-beta lyase 2##AK301326|CCBL2|56267|cysteine conjugate-beta lyase 2##AK315917|CCBL2|56267|cysteine conjugate-beta lyase 2##AK057176|CCBL2|56267|cysteine conjugate-beta lyase 2##AY028624|CCBL2|56267|cysteine conjugate-beta lyase 2##NM_001008661|CCBL2|56267|cysteine conjugate-beta lyase 2##NM_001008662|CCBL2|56267|cysteine conjugate-beta lyase 2##NM_001162536|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##NM_019610|RBMXL1|494115|RNA binding motif protein, X-linked-like 1##JF927951|GBP3|2635|guanylate binding protein 3##BC140837|GBP3|2635|guanylate binding protein 3##BC144650|GBP3|2635|guanylate binding protein 3##BC063819|GBP3|2635|guanylate binding protein 3##CR936758|GBP3|2635|guanylate binding protein 3##AK001823|GBP3|2635|guanylate binding protein 3##BC017992|GBP3|2635|guanylate binding protein 3##AK309096|GBP3|2635|guanylate binding protein 3##AL136680|GBP3|2635|guanylate binding protein 3##CR936755|GBP3|2635|guanylate binding protein 3##NM_018284|GBP3|2635|guanylate binding protein 3	0.0	0.936111	CTCF.p2:-38:0.936
chr4	106151642	106151746	reg1015973.p1	4.166	+	TSC_hg19_v1_chr4_+_106068032 AK055149 BC150180 BC150201	-83650	+	TSC_hg19_v1_chr4_+_106067844 NM_001127208	-83883	+	BX640738 NM_017628	-84663	+	AM393754 AM393796 TSC_hg19_v1_chr4_-_106395220 AK294097 AL136655 AF161473 BC039462 BC008246 BC035569 BC012903 BC022803 AK289607 CU691190 AM393483 EU831414 EU831507 BC001065 BC021071 AB528841 AK297096 AK299125 AK299501 BC057219 AK000466 AB026722 AF217187 NM_006903 NM_176866 NM_176867 NM_176869	243496	-	AK000191 NM_001242729 NM_017700 BC105695	322088	+	TSC_hg19_v1_chr4_-_106629819 BC014442 AK314939 NM_001142471 NM_020395	478147	-	AK055149|TET2|54790|tet methylcytosine dioxygenase 2##BC150180|TET2|54790|tet methylcytosine dioxygenase 2##BC150201|TET2|54790|tet methylcytosine dioxygenase 2##NM_001127208|TET2|54790|tet methylcytosine dioxygenase 2##BX640738|TET2|54790|tet methylcytosine dioxygenase 2##NM_017628|TET2|54790|tet methylcytosine dioxygenase 2##AM393754|PPA2|27068|pyrophosphatase (inorganic) 2##AM393796|PPA2|27068|pyrophosphatase (inorganic) 2##AK294097|PPA2|27068|pyrophosphatase (inorganic) 2##AL136655|PPA2|27068|pyrophosphatase (inorganic) 2##AF161473|PPA2|27068|pyrophosphatase (inorganic) 2##BC039462|PPA2|27068|pyrophosphatase (inorganic) 2##BC008246|PPA2|27068|pyrophosphatase (inorganic) 2##BC035569|PPA2|27068|pyrophosphatase (inorganic) 2##BC012903|PPA2|27068|pyrophosphatase (inorganic) 2##BC022803|PPA2|27068|pyrophosphatase (inorganic) 2##AK289607|PPA2|27068|pyrophosphatase (inorganic) 2##AM393483|PPA2|27068|pyrophosphatase (inorganic) 2##EU831414|PPA2|27068|pyrophosphatase (inorganic) 2##EU831507|PPA2|27068|pyrophosphatase (inorganic) 2##AK299125|PPA2|27068|pyrophosphatase (inorganic) 2##BC057219|PPA2|27068|pyrophosphatase (inorganic) 2##AK000466|PPA2|27068|pyrophosphatase (inorganic) 2##AB026722|PPA2|27068|pyrophosphatase (inorganic) 2##AF217187|PPA2|27068|pyrophosphatase (inorganic) 2##NM_006903|PPA2|27068|pyrophosphatase (inorganic) 2##NM_176866|PPA2|27068|pyrophosphatase (inorganic) 2##NM_176867|PPA2|27068|pyrophosphatase (inorganic) 2##NM_176869|PPA2|27068|pyrophosphatase (inorganic) 2##AK000191|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38##NM_001242729|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38##NM_017700|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38##BC105695|ARHGEF38|54848|Rho guanine nucleotide exchange factor (GEF) 38##BC014442|INTS12|57117|integrator complex subunit 12##AK314939|INTS12|57117|integrator complex subunit 12##NM_001142471|INTS12|57117|integrator complex subunit 12##NM_020395|INTS12|57117|integrator complex subunit 12	0.0	0.0	
chr4	184643832	184643950	reg1012123.p1	4.166	+	TSC_hg19_v1_chr4_+_184580539 BC139745	-63380	+	NM_021942 NM_199053 TSC_hg19_v1_chr4_+_184580445 AL833571 AK096345 BX648499 BX647127 BX538044 BC040530 BC051724	-63442	+	CU688324 BC107432 TSC_hg19_v1_chr4_-_184580305 AK021702 AK293274 AK315515 BC017472 BC067752 NM_152682	-63649	-	TSC_hg19_v1_chr4_+_184826513 AB037813 BC146754 NM_020225	182615	+	TSC_hg19_v1_chr4_+_184827807 AK289840	183929	+	TSC_hg19_v1_chr4_+_184827885 AB384196	184020	+	BC139745|C4orf41|60684|chromosome 4 open reading frame 41##NM_021942|C4orf41|60684|chromosome 4 open reading frame 41##NM_199053|C4orf41|60684|chromosome 4 open reading frame 41##AL833571|C4orf41|60684|chromosome 4 open reading frame 41##AK096345|C4orf41|60684|chromosome 4 open reading frame 41##BX648499|C4orf41|60684|chromosome 4 open reading frame 41##BX647127|C4orf41|60684|chromosome 4 open reading frame 41##BX538044|C4orf41|60684|chromosome 4 open reading frame 41##BC040530|C4orf41|60684|chromosome 4 open reading frame 41##BC051724|C4orf41|60684|chromosome 4 open reading frame 41##BC107432|RWDD4|201965|RWD domain containing 4##AK021702|RWDD4|201965|RWD domain containing 4##AK293274|RWDD4|201965|RWD domain containing 4##AK315515|RWDD4|201965|RWD domain containing 4##BC017472|RWDD4|201965|RWD domain containing 4##BC067752|RWDD4|201965|RWD domain containing 4##NM_152682|RWDD4|201965|RWD domain containing 4##AB037813|STOX2|56977|storkhead box 2##BC146754|STOX2|56977|storkhead box 2##NM_020225|STOX2|56977|storkhead box 2##AK289840|STOX2|56977|storkhead box 2	0.995598	0.0	denovo_WM_7:-34:0.246	denovo_WM_7:-35:0.246	denovo_WM_7:-36:0.246	denovo_WM_7:-37:0.246
chr11	20408943	20409056	reg1008177.p2	4.165	+	AF092095 NM_001098523 U69161 AK223010 BC015358 AK222969 AF039103 EU446982 AB463744 CR456821	-23265	+	TSC_hg19_v1_chr11_+_20385346 BC002439 NM_001098522	-23636	+	TSC_hg19_v1_chr11_+_20385268 AK292092 NM_001098520	-23718	+	NM_001145166 NM_001145167 NM_005788 TSC_hg19_v1_chr11_+_20409136 BC064831 BC019339 AK129984	117	+	BC047226 TSC_hg19_v1_chr11_+_20409261 AK301449 AK298185 AK300591 BC037544 AB590779 EU831425 EU831518	261	+	NM_004211 AF085412	211948	+	AF092095|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098523|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##U69161|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK223010|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##BC015358|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK222969|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AF039103|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##EU446982|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##CR456821|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##BC002439|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098522|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK292092|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098520|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001145166|PRMT3|10196|protein arginine methyltransferase 3##NM_001145167|PRMT3|10196|protein arginine methyltransferase 3##NM_005788|PRMT3|10196|protein arginine methyltransferase 3##BC064831|PRMT3|10196|protein arginine methyltransferase 3##BC019339|PRMT3|10196|protein arginine methyltransferase 3##AK129984|PRMT3|10196|protein arginine methyltransferase 3##BC047226|PRMT3|10196|protein arginine methyltransferase 3##AK301449|PRMT3|10196|protein arginine methyltransferase 3##AK298185|PRMT3|10196|protein arginine methyltransferase 3##AK300591|PRMT3|10196|protein arginine methyltransferase 3##BC037544|PRMT3|10196|protein arginine methyltransferase 3##EU831425|PRMT3|10196|protein arginine methyltransferase 3##EU831518|PRMT3|10196|protein arginine methyltransferase 3##NM_004211|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5##AF085412|SLC6A5|9152|solute carrier family 6 (neurotransmitter transporter, glycine), member 5	0.0	0.0	
chr11	90471968	90472148	reg1015021.p1	4.165	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-487648	+	AK290231 NM_001144073 NM_012124	-515527	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-515856	-	NM_001008781	1613203	+	BC069163 NM_005959 U25341 AY521019	2230781	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2458929	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.0	0.0	
chr15	96601867	96601979	reg1015934.p2	4.165	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-731604	-	NM_001159644 BC025708 BC111024 AK002037	-1702614	+	NM_001159643 NM_018349 AY656717 BC131527	-1760462	+	BC106083 NM_001145155 FM208183	267238	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	272054	+	AK316086 NM_001145156	273870	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.108757	0.0	
chr16	303002	303125	reg1014990.p2	4.165	+	AK294581 AL136542 TSC_hg19_v1_chr16_+_284834	-18227	+	TSC_hg19_v1_chr16_+_284828 AK310766 AK057165 NM_032039	-18250	+	CU678436 AB528653 TSC_hg19_v1_chr16_-_279416 BC065198 AJ404326 AK001093 BX647161 AK223084 BC003194 AY005111 NM_018032 NM_201412	-23653	-	AK308972 AB016929 AB464135 AF035153 AF035154 NM_003834 NM_183337 AK294033 BC141803 AK293564 AK294448 AK091701 AX747138 BC040504	22860	-	BC047699 NM_001176 U82532 AB590832 CU690464 AB127078 AF498928	27579	+	NM_006849 TSC_hg19_v1_chr16_+_333160 AK075485 AK124931 BC027964 BC000537 AK308516 BC075029 U19948 AK295383	30108	+	AK294581|ITFG3|83986|integrin alpha FG-GAP repeat containing 3##AL136542|ITFG3|83986|integrin alpha FG-GAP repeat containing 3##AK310766|ITFG3|83986|integrin alpha FG-GAP repeat containing 3##AK057165|ITFG3|83986|integrin alpha FG-GAP repeat containing 3##NM_032039|ITFG3|83986|integrin alpha FG-GAP repeat containing 3##BC065198|LUC7L|55692|LUC7-like (S. cerevisiae)##AJ404326|LUC7L|55692|LUC7-like (S. cerevisiae)##AK001093|LUC7L|55692|LUC7-like (S. cerevisiae)##BX647161|LUC7L|55692|LUC7-like (S. cerevisiae)##AK223084|LUC7L|55692|LUC7-like (S. cerevisiae)##BC003194|LUC7L|55692|LUC7-like (S. cerevisiae)##AY005111|LUC7L|55692|LUC7-like (S. cerevisiae)##NM_018032|LUC7L|55692|LUC7-like (S. cerevisiae)##NM_201412|LUC7L|55692|LUC7-like (S. cerevisiae)##AK308972|RGS11|8786|regulator of G-protein signaling 11##AB016929|RGS11|8786|regulator of G-protein signaling 11##AF035153|RGS11|8786|regulator of G-protein signaling 11##AF035154|RGS11|8786|regulator of G-protein signaling 11##NM_003834|RGS11|8786|regulator of G-protein signaling 11##NM_183337|RGS11|8786|regulator of G-protein signaling 11##BC141803|RGS11|8786|regulator of G-protein signaling 11##AK293564|RGS11|8786|regulator of G-protein signaling 11##AK294448|RGS11|8786|regulator of G-protein signaling 11##AK091701|RGS11|8786|regulator of G-protein signaling 11##BC040504|RGS11|8786|regulator of G-protein signaling 11##BC047699|ARHGDIG|398|Rho GDP dissociation inhibitor (GDI) gamma##NM_001176|ARHGDIG|398|Rho GDP dissociation inhibitor (GDI) gamma##U82532|ARHGDIG|398|Rho GDP dissociation inhibitor (GDI) gamma##AF498928|ARHGDIG|398|Rho GDP dissociation inhibitor (GDI) gamma##NM_006849|PDIA2|64714|protein disulfide isomerase family A, member 2##AK075485|PDIA2|64714|protein disulfide isomerase family A, member 2##AK124931|PDIA2|64714|protein disulfide isomerase family A, member 2##BC027964|PDIA2|64714|protein disulfide isomerase family A, member 2##BC000537|PDIA2|64714|protein disulfide isomerase family A, member 2##AK308516|PDIA2|64714|protein disulfide isomerase family A, member 2##BC075029|PDIA2|64714|protein disulfide isomerase family A, member 2##U19948|PDIA2|64714|protein disulfide isomerase family A, member 2##AK295383|PDIA2|64714|protein disulfide isomerase family A, member 2	0.0	0.0	
chr19	33730517	33730642	reg1009107.p1	4.165	+	CU690138 AK316594 TSC_hg19_v1_chr19_-_33716685 BC035627 AK307527 AB037670 AJ277731 BC022457 NM_019849	-13897	-	TSC_hg19_v1_chr19_+_33697959 AF085860	-32583	+	AB009462 NM_002333 BC007408 TSC_hg19_v1_chr19_+_33685676 EU176387 AK296536	-44976	+	AB590467 TSC_hg19_v1_chr19_-_33793398	62784	-	BC027902 BC063874 NM_004364 TSC_hg19_v1_chr19_-_33793437	62854	-	TSC_hg19_v1_chr19_-_33793441 Y11525	62876	-	AK316594|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##BC035627|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##AK307527|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##AB037670|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##AJ277731|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##BC022457|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##NM_019849|SLC7A10|56301|solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10##AF085860|LRP3|4037|low density lipoprotein receptor-related protein 3##AB009462|LRP3|4037|low density lipoprotein receptor-related protein 3##NM_002333|LRP3|4037|low density lipoprotein receptor-related protein 3##BC007408|LRP3|4037|low density lipoprotein receptor-related protein 3##EU176387|LRP3|4037|low density lipoprotein receptor-related protein 3##AK296536|LRP3|4037|low density lipoprotein receptor-related protein 3##BC027902|CEBPA|1050|CCAAT/enhancer binding protein (C/EBP), alpha##BC063874|CEBPA|1050|CCAAT/enhancer binding protein (C/EBP), alpha##NM_004364|CEBPA|1050|CCAAT/enhancer binding protein (C/EBP), alpha##Y11525|CEBPA|1050|CCAAT/enhancer binding protein (C/EBP), alpha	0.994628	0.0	denovo_WM_7:10:0.239	denovo_WM_7:11:0.239	denovo_WM_7:12:0.239	denovo_WM_7:13:0.239
chr5	115700898	115701027	reg1012783.p1	4.165	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-280241	+	NM_001195581	-313800	+	AK291655 BC068560 NM_173800 BC060869 AY560010 BC109022 BC109023	-402751	+	TSC_hg19_v1_chr5_+_115898220 D28352	197262	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	209552	-	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2623276	-	AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##NM_001195581|LOC644100|644100|uncharacterized LOC644100##AK291655|AQPEP|206338|laeverin##BC068560|AQPEP|206338|laeverin##NM_173800|AQPEP|206338|laeverin##BC060869|AQPEP|206338|laeverin##AY560010|AQPEP|206338|laeverin##BC109022|AQPEP|206338|laeverin##BC109023|AQPEP|206338|laeverin##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2	0.474267	0.0	denovo_WM_7:-6:0.449
chr5	127414453	127414588	reg1015683.p1	4.165	+	NM_001127385 AB219832 BC071790	-425795	+	NM_001048252 AB219764	-429797	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-555326	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	4243	-	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	4839	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	4953	+	NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.440816	0.0	denovo_WM_7:-22:0.303
chr5	149534897	149535053	reg1009856.p2	4.165	+	NM_005211 X03663	-42041	-	TSC_hg19_v1_chr5_-_149466188 BC047521 AK304491 M25786	-68742	-	TSC_hg19_v1_chr5_-_149466131 AB208819	-68829	-	M21616 TSC_hg19_v1_chr5_-_149535251 AK293093	229	-	J03278 M30493 TSC_hg19_v1_chr5_-_149535344	360	-	BC032224 AB209657 NM_002609 TSC_hg19_v1_chr5_-_149535428	449	-	NM_005211|CSF1R|1436|colony stimulating factor 1 receptor##X03663|CSF1R|1436|colony stimulating factor 1 receptor##BC047521|CSF1R|1436|colony stimulating factor 1 receptor##AK304491|CSF1R|1436|colony stimulating factor 1 receptor##M25786|CSF1R|1436|colony stimulating factor 1 receptor##AB208819|CSF1R|1436|colony stimulating factor 1 receptor##M21616|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##AK293093|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##J03278|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##M30493|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##BC032224|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##AB209657|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide##NM_002609|PDGFRB|5159|platelet-derived growth factor receptor, beta polypeptide	0.979412	0.0	
chr7	72667737	72667897	reg1013305.p1	4.165	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	-98786	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-242575	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-270943	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	55007	-	AK057366 AY081948 AY081949 NM_178125	74267	-	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	74475	+	BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa	1.987158	0.0	denovo_WM_7:-64:0.272	denovo_WM_7:-67:0.408	denovo_WM_7:99:0.248	denovo_WM_7:100:0.248	denovo_WM_7:101:0.248	denovo_WM_7:102:0.248
chr10	71906846	71906996	reg1000838.p2	4.164	+	TSC_hg19_v1_chr10_-_71906457 BC047424 NM_001040273 NM_173555	-441	-	TSC_hg19_v1_chr10_-_71906446 BC030242 AK074968 BC111501 BC042629	-493	-	TSC_hg19_v1_chr10_-_71905958 BC016840	-915	-	TSC_hg19_v1_chr10_-_71930260 AK298591 AK312469 BC003658 AF274026 AF087897 AF217959 AF261717 AY008268 AL136724 NM_001142648 NM_020150	23358	-	AF108211 AB590125 AF217186 DQ893597 AB026723 TSC_hg19_v1_chr10_-_71993148 BC107882 AF154065 BC105034 BC105036 AF092439 AF119665 BC001022 BC061581 AK058193 NM_021129	86232	-	NM_022146	136528	-	BC047424|TYSND1|219743|trypsin domain containing 1##NM_001040273|TYSND1|219743|trypsin domain containing 1##NM_173555|TYSND1|219743|trypsin domain containing 1##BC030242|TYSND1|219743|trypsin domain containing 1##AK074968|TYSND1|219743|trypsin domain containing 1##BC111501|TYSND1|219743|trypsin domain containing 1##BC042629|TYSND1|219743|trypsin domain containing 1##BC016840|TYSND1|219743|trypsin domain containing 1##AK298591|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AK312469|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##BC003658|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF274026|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF087897|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF217959|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF261717|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AY008268|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AL136724|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_001142648|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##NM_020150|SAR1A|56681|SAR1 homolog A (S. cerevisiae)##AF108211|PPA1|5464|pyrophosphatase (inorganic) 1##AF217186|PPA1|5464|pyrophosphatase (inorganic) 1##DQ893597|PPA1|5464|pyrophosphatase (inorganic) 1##AB026723|PPA1|5464|pyrophosphatase (inorganic) 1##BC107882|PPA1|5464|pyrophosphatase (inorganic) 1##AF154065|PPA1|5464|pyrophosphatase (inorganic) 1##BC105034|PPA1|5464|pyrophosphatase (inorganic) 1##BC105036|PPA1|5464|pyrophosphatase (inorganic) 1##AF092439|PPA1|5464|pyrophosphatase (inorganic) 1##AF119665|PPA1|5464|pyrophosphatase (inorganic) 1##BC001022|PPA1|5464|pyrophosphatase (inorganic) 1##BC061581|PPA1|5464|pyrophosphatase (inorganic) 1##AK058193|PPA1|5464|pyrophosphatase (inorganic) 1##NM_021129|PPA1|5464|pyrophosphatase (inorganic) 1##NM_022146|NPFFR1|64106|neuropeptide FF receptor 1	0.0	0.191008	
chr12	38519926	38520018	reg1013185.p2	4.164	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4344499	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4344586	+	AJ312278 NM_032834	-4344757	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	190653	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	779411	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1317027	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.0	0.0	
chr1	46814410	46814551	reg1007250.p2	4.164	+	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	-8037	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-45093	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-45432	-	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	45496	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	158192	+	NM_001097611	202406	-	NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_001097611|KNCN|148930|kinocilin	2.233087	0.0	denovo_WM_7:-78:0.255	denovo_WM_7:-93:0.245
chr5	71121955	71122088	reg1016617.p1	4.164	+	NM_004291 BC029882 U16826 CR542216 CU688778 EU831800 EU831877	-106967	+	TSC_hg19_v1_chr5_+_70944968 AK025591	-177034	+	AF261884 TSC_hg19_v1_chr5_+_70883182 BC065027 CU688004	-238806	+	TSC_hg19_v1_chr5_+_71403301 BC017240 NM_005909 BC025240 BC139918 BC150196 BC046114 AK096273 AK308147 BX647077 BC039822 BC108733 BC032516 BC073993 BC056145 BC063669 BC094834 AB463119	281258	+	TSC_hg19_v1_chr5_+_71502701 AK125194	380742	+	CU687962 D87453 TSC_hg19_v1_chr5_-_71616067 BC064902 BC011818 AK299412 AK025417 AK309065	494037	-	NM_004291|CARTPT|9607|CART prepropeptide##BC029882|CARTPT|9607|CART prepropeptide##U16826|CARTPT|9607|CART prepropeptide##CR542216|CARTPT|9607|CART prepropeptide##EU831800|CARTPT|9607|CART prepropeptide##EU831877|CARTPT|9607|CART prepropeptide##AK025591|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)##AF261884|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)##BC065027|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)##BC017240|MAP1B|4131|microtubule-associated protein 1B##NM_005909|MAP1B|4131|microtubule-associated protein 1B##BC025240|MAP1B|4131|microtubule-associated protein 1B##BC139918|MAP1B|4131|microtubule-associated protein 1B##BC150196|MAP1B|4131|microtubule-associated protein 1B##BC046114|MAP1B|4131|microtubule-associated protein 1B##AK096273|MAP1B|4131|microtubule-associated protein 1B##AK308147|MAP1B|4131|microtubule-associated protein 1B##BX647077|MAP1B|4131|microtubule-associated protein 1B##BC039822|MAP1B|4131|microtubule-associated protein 1B##BC108733|MAP1B|4131|microtubule-associated protein 1B##BC032516|MAP1B|4131|microtubule-associated protein 1B##BC073993|MAP1B|4131|microtubule-associated protein 1B##BC056145|MAP1B|4131|microtubule-associated protein 1B##BC063669|MAP1B|4131|microtubule-associated protein 1B##BC094834|MAP1B|4131|microtubule-associated protein 1B##AK125194|MAP1B|4131|microtubule-associated protein 1B##D87453|MRPS27|23107|mitochondrial ribosomal protein S27##BC064902|MRPS27|23107|mitochondrial ribosomal protein S27##BC011818|MRPS27|23107|mitochondrial ribosomal protein S27##AK299412|MRPS27|23107|mitochondrial ribosomal protein S27##AK025417|MRPS27|23107|mitochondrial ribosomal protein S27##AK309065|MRPS27|23107|mitochondrial ribosomal protein S27	0.99968	0.0	denovo_WM_7:5:0.472
chr7	5279946	5280050	reg1017154.p2	4.164	+	BC016912 AF151808 NM_001033520 AY691426	-26106	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-50013	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-50083	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	42608	+	TSC_hg19_v1_chr7_-_5460842 BC140723	180908	-	AY129022 TSC_hg19_v1_chr7_-_5461555	181543	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.0	0.955737	CTCF.p2:0:0.956
chr10	125262652	125262792	reg1012056.p2	4.163	+	TSC_hg19_v1_chr10_+_124914364 AB463452 AB590162 CU692616 DQ891852 DQ895042	-348366	+	TSC_hg19_v1_chr10_+_124913926 AF081496 AF047472 AF047473 BC005138 BC022438 AF053304	-348776	+	TSC_hg19_v1_chr10_+_124913906 AK312546 AK307958 AK293255	-348824	+	AJ505757 NM_153442 BC112011 BC113462	163155	+	BC137492 BC146862 AY358565 NM_198148	388774	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	589177	-	DQ891852|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##DQ895042|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF081496|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF047472|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF047473|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC005138|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC022438|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AF053304|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AK312546|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AK307958|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AK293255|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##AJ505757|GPR26|2849|G protein-coupled receptor 26##NM_153442|GPR26|2849|G protein-coupled receptor 26##BC112011|GPR26|2849|G protein-coupled receptor 26##BC113462|GPR26|2849|G protein-coupled receptor 26##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	0.0	0.0	
chr15	41153476	41153656	reg1002970.p1	4.163	+	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-16865	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-17216	+	AK000258 BC096716 BC098124 BC098150 BC098341 NM_001130143 NM_017726	-32661	-	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	12881	-	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	33134	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	68132	+	NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK000258|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC096716|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098124|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098150|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098341|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_001130143|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_017726|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)	0.998831	0.027449	
chr2	206948859	206949039	reg1004277.p2	4.163	+	TSC_hg19_v1_chr2_+_206547371 AK290934	-401588	+	TSC_hg19_v1_chr2_+_206547224 AK130198 AL833606 NM_003872 NM_018534 NM_201264 NM_201266 NM_201267 NM_201279 BX537423	-401771	+	TSC_hg19_v1_chr2_+_205410716 AB073472 AB092439 AF428250 AF428251 AF466152	-1538230	+	TSC_hg19_v1_chr2_-_206950902 AK096585 NM_017759	1962	-	AK295987 NM_001199984	74968	-	X61100 AK098395 BC018900 BC022368 TSC_hg19_v1_chr2_-_207024145 AK300585 BC030833 AK295705 AK295966 AK298320 BC004133 NM_001199981 NM_001199982 NM_001199983 NM_005006	75223	-	AK290934|NRP2|8828|neuropilin 2##AK130198|NRP2|8828|neuropilin 2##AL833606|NRP2|8828|neuropilin 2##NM_003872|NRP2|8828|neuropilin 2##NM_018534|NRP2|8828|neuropilin 2##NM_201264|NRP2|8828|neuropilin 2##NM_201266|NRP2|8828|neuropilin 2##NM_201267|NRP2|8828|neuropilin 2##NM_201279|NRP2|8828|neuropilin 2##BX537423|NRP2|8828|neuropilin 2##AB073472|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AB092439|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428250|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428251|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF466152|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AK096585|INO80D|54891|INO80 complex subunit D##NM_017759|INO80D|54891|INO80 complex subunit D##AK295987|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199984|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##X61100|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK098395|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC018900|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC022368|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK300585|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC030833|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295705|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK295966|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##AK298320|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##BC004133|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199981|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199982|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_001199983|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)##NM_005006|NDUFS1|4719|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)	0.205735	0.0	
chr4	2750059	2750143	reg1007065.p2	4.163	+	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	-122928	+	NM_001185009 BC031935	-278921	+	TSC_hg19_v1_chr4_+_2470846 AK312534 AK309509 U95140	-279225	+	AK026176 NM_001161527	7649	-	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	7962	-	TSC_hg19_v1_chr4_+_2794755 AK225497 NM_001122681 BC022996	44634	+	AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##NM_001185009|RNF4|6047|ring finger protein 4##BC031935|RNF4|6047|ring finger protein 4##AK312534|RNF4|6047|ring finger protein 4##AK309509|RNF4|6047|ring finger protein 4##U95140|RNF4|6047|ring finger protein 4##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2##AK225497|SH3BP2|6452|SH3-domain binding protein 2##NM_001122681|SH3BP2|6452|SH3-domain binding protein 2##BC022996|SH3BP2|6452|SH3-domain binding protein 2	0.99753	0.0	denovo_WM_7:-20:0.884
chr1	28970527	28970707	reg1013058.p2	4.162	+	BC011986 TSC_hg19_v1_chr1_-_28969617 U57693 X84002 AK310097 NM_001135218 NM_005644	-1037	-	NM_001193532 AK026009	-51601	+	BC033175 NM_152304 AK312176	-51875	+	TSC_hg19_v1_chr1_+_28995244 NM_006582 NM_024482 AK000892	24612	+	BC001473 AK315195 AK315436 AF173868 AF203694 AK023126 TSC_hg19_v1_chr1_+_28995361	24711	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	92666	+	BC011986|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##U57693|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##X84002|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##AK310097|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_001135218|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_005644|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_001193532|RAB42|115273|RAB42, member RAS oncogene family##BC033175|RAB42|115273|RAB42, member RAS oncogene family##NM_152304|RAB42|115273|RAB42, member RAS oncogene family##AK312176|RAB42|115273|RAB42, member RAS oncogene family##NM_006582|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_024482|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK000892|GMEB1|10691|glucocorticoid modulatory element binding protein 1##BC001473|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315195|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315436|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF173868|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF203694|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK023126|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2	0.995841	0.0	denovo_WM_7:-46:0.825
chr1	40071941	40072121	reg1010986.p1	4.162	+	TSC_hg19_v1_chr1_-_40042519 NM_001135653 NM_001135654 NM_003819	-29512	-	BC094755 TSC_hg19_v1_chr1_-_40042463	-29555	-	U75686 BC065540 TSC_hg19_v1_chr1_-_40042460 BC071591	-29594	-	TSC_hg19_v1_chr1_-_40098640 AK300463	26624	-	AF311885 EU446871 TSC_hg19_v1_chr1_-_40105307 AB463718 AJ272215 BC006087	33285	-	TSC_hg19_v1_chr1_-_40105343 NM_014571	33314	-	NM_001135653|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##NM_001135654|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##NM_003819|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##BC094755|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##U75686|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##BC065540|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##BC071591|PABPC4|8761|poly(A) binding protein, cytoplasmic 4 (inducible form)##AK300463|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AF311885|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##EU446871|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AJ272215|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##BC006087|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##NM_014571|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like	0.0	0.999261	CTCF.p2:3:0.999
chr15	23115525	23115654	reg1015522.p1	4.162	+	TSC_hg19_v1_chr15_-_23115247 BC044583	-341	-	BC025678 NM_001142275	-28747	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	-29215	-	DQ309040 BC048987 TSC_hg19_v1_chr15_-_23208467	92822	-	TSC_hg19_v1_chr15_-_23378205 AK308640	262601	-	TSC_hg19_v1_chr15_-_23378229 AF041081 AF041080	262655	-	BC044583|LOC283683|283683|uncharacterized LOC283683##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##DQ309040|WHAMMP3|339005|WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3##BC048987|WHAMMP3|339005|WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3##AK308640|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##AF041081|HERC2P2|400322|hect domain and RLD 2 pseudogene 2##AF041080|HERC2P2|400322|hect domain and RLD 2 pseudogene 2	0.994432	0.0	denovo_WM_7:1:0.973
chr16	2371170	2371301	reg1001013.p2	4.162	+	U66675 TSC_hg19_v1_chr16_-_2336925	-34336	-	NM_080594 TSC_hg19_v1_chr16_-_2318415	-52815	-	TSC_hg19_v1_chr16_-_2318393 AK316132	-52843	-	AK310864 U78735 TSC_hg19_v1_chr16_-_2390699	19412	-	TSC_hg19_v1_chr16_-_2390730 BC151840	19487	-	TSC_hg19_v1_chr16_-_2390785 AB210044 NM_001089	19531	-	NM_080594|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK316132|RNPS1|10921|RNA binding protein S1, serine-rich domain##AK310864|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##U78735|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##BC151840|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##AB210044|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3##NM_001089|ABCA3|21|ATP-binding cassette, sub-family A (ABC1), member 3	0.0	0.0	
chr21	32568082	32568186	reg1009385.p2	4.162	+	AB096964 NM_001099219	-157340	-	HQ258726 AB096963 BC130555 BC130557 AJ457065 NM_175858	-314276	-	AJ457063 AB096962 NM_181606	-366146	-	NM_003253 U16296 TSC_hg19_v1_chr21_-_32931371	363224	-	TSC_hg19_v1_chr21_+_33032005 NM_000454 AK312116 BC001034 X02317 EF151142 AB464254 AY049787 AY450286 BT006676 CR450355 CR541742 CU674512 EF143990	463873	+	AB032998 AK025748 AL117417 TSC_hg19_v1_chr21_-_33074136	505984	-	AB096964|KRTAP19-8|728299|keratin associated protein 19-8##NM_001099219|KRTAP19-8|728299|keratin associated protein 19-8##AB096963|KRTAP11-1|337880|keratin associated protein 11-1##BC130555|KRTAP11-1|337880|keratin associated protein 11-1##BC130557|KRTAP11-1|337880|keratin associated protein 11-1##AJ457065|KRTAP11-1|337880|keratin associated protein 11-1##NM_175858|KRTAP11-1|337880|keratin associated protein 11-1##AJ457063|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##AB096962|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_181606|KRTAP7-1|337878|keratin associated protein 7-1 (gene/pseudogene)##NM_003253|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##U16296|TIAM1|7074|T-cell lymphoma invasion and metastasis 1##NM_000454|SOD1|6647|superoxide dismutase 1, soluble##AK312116|SOD1|6647|superoxide dismutase 1, soluble##BC001034|SOD1|6647|superoxide dismutase 1, soluble##X02317|SOD1|6647|superoxide dismutase 1, soluble##EF151142|SOD1|6647|superoxide dismutase 1, soluble##AY049787|SOD1|6647|superoxide dismutase 1, soluble##AY450286|SOD1|6647|superoxide dismutase 1, soluble##BT006676|SOD1|6647|superoxide dismutase 1, soluble##CR450355|SOD1|6647|superoxide dismutase 1, soluble##CR541742|SOD1|6647|superoxide dismutase 1, soluble##EF143990|SOD1|6647|superoxide dismutase 1, soluble##AB032998|SCAF4|57466|SR-related CTD-associated factor 4##AK025748|SCAF4|57466|SR-related CTD-associated factor 4##AL117417|SCAF4|57466|SR-related CTD-associated factor 4	0.0	0.0	
chr15	91530464	91530604	reg1006328.p2	4.161	+	BC064606 BC113826 TSC_hg19_v1_chr15_+_91499981	-30559	+	TSC_hg19_v1_chr15_+_91498113 NM_001017919 NM_033544 BC140708 BC140709 BC094739	-32443	+	TSC_hg19_v1_chr15_+_91478539 AK000905 AK293538 BC037992 DQ892953 DQ896200 CU691534	-51980	+	AF044588 BC003138 TSC_hg19_v1_chr15_-_91537766 AK297117 AK304094 BC005140 AK312600 NM_003981 NM_199413 NM_199414	7232	-	CU677627 TSC_hg19_v1_chr15_-_91565525	34968	-	BC016445 TSC_hg19_v1_chr15_-_91565785 AK074863 AF201694 AK315721 AF308803 AK027754 AK300608 AK293688 AK308480 NM_018668	35236	-	BC064606|RCCD1|91433|RCC1 domain containing 1##BC113826|RCCD1|91433|RCC1 domain containing 1##NM_001017919|RCCD1|91433|RCC1 domain containing 1##NM_033544|RCCD1|91433|RCC1 domain containing 1##BC140708|RCCD1|91433|RCC1 domain containing 1##BC140709|RCCD1|91433|RCC1 domain containing 1##BC094739|RCCD1|91433|RCC1 domain containing 1##AK000905|UNC45A|55898|unc-45 homolog A (C. elegans)##AK293538|UNC45A|55898|unc-45 homolog A (C. elegans)##BC037992|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ892953|UNC45A|55898|unc-45 homolog A (C. elegans)##DQ896200|UNC45A|55898|unc-45 homolog A (C. elegans)##AF044588|PRC1|9055|protein regulator of cytokinesis 1##BC003138|PRC1|9055|protein regulator of cytokinesis 1##AK297117|PRC1|9055|protein regulator of cytokinesis 1##AK304094|PRC1|9055|protein regulator of cytokinesis 1##BC005140|PRC1|9055|protein regulator of cytokinesis 1##AK312600|PRC1|9055|protein regulator of cytokinesis 1##NM_003981|PRC1|9055|protein regulator of cytokinesis 1##NM_199413|PRC1|9055|protein regulator of cytokinesis 1##NM_199414|PRC1|9055|protein regulator of cytokinesis 1##BC016445|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK074863|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF201694|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK315721|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AF308803|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK027754|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK300608|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK293688|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##AK308480|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)##NM_018668|VPS33B|26276|vacuolar protein sorting 33 homolog B (yeast)	0.157693	0.0	
chr17	46913942	46914094	reg1010667.p2	4.161	+	NM_005831 AK293329 TSC_hg19_v1_chr17_+_46908406 AK293137 AK303313 AK304024 AK310648 AK314796 U22897 AK222666 AK223227 AK298177 BC004130	-5628	+	AK097392 AK302952 BC041368 AL834151 NM_001130918	-19594	-	CU689652 BC033563 NM_173623 AK310321	-42373	-	AK095669 TSC_hg19_v1_chr17_+_46970178 NM_001002027 NM_005175 AL080089 AK311848 D13118	56167	+	TSC_hg19_v1_chr17_+_46985768 NM_023079 AK296865	71727	+	AK130303 TSC_hg19_v1_chr17_+_46985840 AK024030 AK122770	71816	+	NM_005831|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293329|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK293137|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK303313|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK304024|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK314796|CALCOCO2|10241|calcium binding and coiled-coil domain 2##U22897|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK222666|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK223227|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK298177|CALCOCO2|10241|calcium binding and coiled-coil domain 2##BC004130|CALCOCO2|10241|calcium binding and coiled-coil domain 2##AK097392|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK302952|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC041368|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AL834151|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_001130918|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##BC033563|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##NM_173623|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK310321|TTLL6|284076|tubulin tyrosine ligase-like family, member 6##AK095669|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_001002027|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_005175|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AL080089|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##AK311848|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##D13118|ATP5G1|516|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)##NM_023079|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK296865|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK130303|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK024030|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z##AK122770|UBE2Z|65264|ubiquitin-conjugating enzyme E2Z	0.0	0.0	
chr20	46131474	46131598	reg1012384.p1	4.161	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-852	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-914	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-146048	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	283216	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	283782	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1312750	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	0.99704	0.0	denovo_WM_7:-81:0.841
chr3	47014329	47014429	reg1007635.p2	4.161	+	BC110388 NM_001184744 TSC_hg19_v1_chr3_+_46923746	-90637	+	BC112221 BC112247 NM_000316 U17418 X68596	-95130	+	AF174483 CU679491 X07373 M24122 AK312044 BC009790 NM_000258	-109454	-	CU676738 TSC_hg19_v1_chr3_-_47018236 AK096749 AK295532 BC020830 AK303160 NM_144716	3866	-	TSC_hg19_v1_chr3_+_47021155 NM_015175 AK131104 AB384492	6868	+	TSC_hg19_v1_chr3_+_47029479 AK092871 AX747781	15091	+	BC110388|PTH1R|5745|parathyroid hormone 1 receptor##NM_001184744|PTH1R|5745|parathyroid hormone 1 receptor##BC112221|PTH1R|5745|parathyroid hormone 1 receptor##BC112247|PTH1R|5745|parathyroid hormone 1 receptor##NM_000316|PTH1R|5745|parathyroid hormone 1 receptor##U17418|PTH1R|5745|parathyroid hormone 1 receptor##X68596|PTH1R|5745|parathyroid hormone 1 receptor##AF174483|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##X07373|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##M24122|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK312044|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##BC009790|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##NM_000258|MYL3|4634|myosin, light chain 3, alkali; ventricular, skeletal, slow##AK096749|CCDC12|151903|coiled-coil domain containing 12##AK295532|CCDC12|151903|coiled-coil domain containing 12##BC020830|CCDC12|151903|coiled-coil domain containing 12##AK303160|CCDC12|151903|coiled-coil domain containing 12##NM_144716|CCDC12|151903|coiled-coil domain containing 12##NM_015175|NBEAL2|23218|neurobeachin-like 2##AK131104|NBEAL2|23218|neurobeachin-like 2##AK092871|NBEAL2|23218|neurobeachin-like 2	0.702345	0.0	denovo_WM_7:-107:0.449
chr8	144544275	144544455	reg1000446.p2	4.161	+	NM_201589	-31764	-	TSC_hg19_v1_chr8_+_144451016 NM_052924 BC012135 BC025767 AB528055 AY082588 CU693058 AB067516	-93275	+	AF349017 NM_052963 TSC_hg19_v1_chr8_-_144417051	-127310	-	D63484 TSC_hg19_v1_chr8_-_144623602 BC038670	79226	-	TSC_hg19_v1_chr8_-_144623640 NM_015117	79267	-	AK291817 NM_001166237	91191	+	NM_201589|MAFA|389692|v-maf musculoaponeurotic fibrosarcoma oncogene homolog A (avian)##NM_052924|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##BC012135|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##BC025767|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AY082588|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AB067516|RHPN1|114822|rhophilin, Rho GTPase binding protein 1##AF349017|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##NM_052963|TOP1MT|116447|topoisomerase (DNA) I, mitochondrial##D63484|ZC3H3|23144|zinc finger CCCH-type containing 3##BC038670|ZC3H3|23144|zinc finger CCCH-type containing 3##NM_015117|ZC3H3|23144|zinc finger CCCH-type containing 3##AK291817|GSDMD|79792|gasdermin D##NM_001166237|GSDMD|79792|gasdermin D	0.0	0.0	
chrX	119115706	119115846	reg1015942.p1	4.161	+	CU677277 CU689374 BC032442 BC015354 BC016783 BC000940 BC012770 TSC_hg19_v1_chrX_-_119077709 BC018968 BC071686 AL832118 AK026279 AY388958 NM_024528	-38103	-	BC066357 NM_001008534 NM_001008535 NM_178813	-85909	+	TSC_hg19_v1_chrX_+_119005794 BC000266 U54993 X81900 AB451304 AB451435 CR456889	-109945	+	AB464156 DQ890992 DQ894169 BC021719 AK058125 AL590524 AF317219 AL590526 NM_001099685 NM_032498	95835	-	AB464155 EU446851 BC103857 BC103858 BC069324 BC069529 AY099086 NM_139282	134034	-	AL590526 NM_001099685 NM_032498 AF317219 AL590524 AK058125 BC021719 AB464156 DQ890992 DQ894169	176785	+	BC032442|NKAP|79576|NFKB activating protein##BC015354|NKAP|79576|NFKB activating protein##BC016783|NKAP|79576|NFKB activating protein##BC000940|NKAP|79576|NFKB activating protein##BC012770|NKAP|79576|NFKB activating protein##BC018968|NKAP|79576|NFKB activating protein##BC071686|NKAP|79576|NFKB activating protein##AL832118|NKAP|79576|NFKB activating protein##AK026279|NKAP|79576|NFKB activating protein##AY388958|NKAP|79576|NFKB activating protein##NM_024528|NKAP|79576|NFKB activating protein##BC066357|AKAP14|158798|A kinase (PRKA) anchor protein 14##NM_001008534|AKAP14|158798|A kinase (PRKA) anchor protein 14##NM_001008535|AKAP14|158798|A kinase (PRKA) anchor protein 14##NM_178813|AKAP14|158798|A kinase (PRKA) anchor protein 14##BC000266|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa##U54993|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa##X81900|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa##AB451304|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa##AB451435|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa##CR456889|NDUFA1|4694|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa##DQ890992|RHOXF2|84528|Rhox homeobox family, member 2##DQ894169|RHOXF2|84528|Rhox homeobox family, member 2##BC021719|RHOXF2|84528|Rhox homeobox family, member 2##AK058125|RHOXF2|84528|Rhox homeobox family, member 2##AL590524|RHOXF2|84528|Rhox homeobox family, member 2##AF317219|RHOXF2|84528|Rhox homeobox family, member 2##AL590526|RHOXF2|84528|Rhox homeobox family, member 2##NM_001099685|RHOXF2B|727940|Rhox homeobox family, member 2B##NM_032498|RHOXF2|84528|Rhox homeobox family, member 2##EU446851|RHOXF1|158800|Rhox homeobox family, member 1##BC103857|RHOXF1|158800|Rhox homeobox family, member 1##BC103858|RHOXF1|158800|Rhox homeobox family, member 1##BC069324|RHOXF1|158800|Rhox homeobox family, member 1##BC069529|RHOXF1|158800|Rhox homeobox family, member 1##AY099086|RHOXF1|158800|Rhox homeobox family, member 1##NM_139282|RHOXF1|158800|Rhox homeobox family, member 1##AL590526|RHOXF2|84528|Rhox homeobox family, member 2##NM_001099685|RHOXF2B|727940|Rhox homeobox family, member 2B##NM_032498|RHOXF2|84528|Rhox homeobox family, member 2##AF317219|RHOXF2|84528|Rhox homeobox family, member 2##AL590524|RHOXF2|84528|Rhox homeobox family, member 2##AK058125|RHOXF2|84528|Rhox homeobox family, member 2##BC021719|RHOXF2|84528|Rhox homeobox family, member 2##DQ890992|RHOXF2|84528|Rhox homeobox family, member 2##DQ894169|RHOXF2|84528|Rhox homeobox family, member 2	1.001552	0.872337	denovo_WM_7:-31:0.785	CTCF.p2:39:0.872
chr10	122610605	122610758	reg1012689.p1	4.160	+	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	-394042	+	NM_007190 TSC_hg19_v1_chr10_+_121652241 AB019435 AK021846 AK314592 AK001135 AK001135 AK301517 BC063800 BC063800 BC002540 AF116723 BX649119 BX649119 AB384691 CU687818 BT006755	-958492	+	AK023143 TSC_hg19_v1_chr10_-_121632359 BC004183 BC007219 NM_024834	-978341	-	NM_018117 TSC_hg19_v1_chr10_+_122610771	47	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	214	+	AB084153 EF057068 EU826598 EU826599 EU826600 EU826601 AB587574 M55614 Z71929 X56191 NM_001144913 NM_001144914	742724	-	NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##NM_007190|SEC23IP|11196|SEC23 interacting protein##AB019435|SEC23IP|11196|SEC23 interacting protein##AK021846|SEC23IP|11196|SEC23 interacting protein##AK314592|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK301517|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC002540|SEC23IP|11196|SEC23 interacting protein##AF116723|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BT006755|SEC23IP|11196|SEC23 interacting protein##AK023143|MCMBP|79892|minichromosome maintenance complex binding protein##BC004183|MCMBP|79892|minichromosome maintenance complex binding protein##BC007219|MCMBP|79892|minichromosome maintenance complex binding protein##NM_024834|MCMBP|79892|minichromosome maintenance complex binding protein##NM_018117|WDR11|55717|WD repeat domain 11##BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11##AB084153|FGFR2|2263|fibroblast growth factor receptor 2##EF057068|FGFR2|2263|fibroblast growth factor receptor 2##EU826598|FGFR2|2263|fibroblast growth factor receptor 2##EU826599|FGFR2|2263|fibroblast growth factor receptor 2##EU826600|FGFR2|2263|fibroblast growth factor receptor 2##EU826601|FGFR2|2263|fibroblast growth factor receptor 2##M55614|FGFR2|2263|fibroblast growth factor receptor 2##Z71929|FGFR2|2263|fibroblast growth factor receptor 2##X56191|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144913|FGFR2|2263|fibroblast growth factor receptor 2##NM_001144914|FGFR2|2263|fibroblast growth factor receptor 2	0.0	0.0	
chr10	3803600	3803685	reg1008771.p1	4.160	+	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-588637	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	-588672	-	BC045577 TSC_hg19_v1_chr10_-_3214936	-588717	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	23669	-	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	23867	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1064776	+	BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2	0.990614	0.0	denovo_WM_7:40:0.322	denovo_WM_7:41:0.322	denovo_WM_7:42:0.322
chr1	53103157	53103290	reg1013270.p1	4.160	+	AK128236 BC041608 NM_001042693	-4183	+	NM_015696 TSC_hg19_v1_chr1_+_53068073 AF320068 AK027683 AY358402 BC032788 DQ890863 DQ894018 CU689540	-35159	+	TSC_hg19_v1_chr1_-_53018765 BC012047 BC018753 BC035820 AK303532 NM_001009881 NM_015269 AK307579 AK095733	-84470	-	TSC_hg19_v1_chr1_-_53164009 BC015313 AK225041	60775	-	TSC_hg19_v1_chr1_-_53164020 AK225087	60794	-	TSC_hg19_v1_chr1_-_53164026 BC005992 AK022501 NM_023077	60807	-	AK128236|FAM159A|348378|family with sequence similarity 159, member A##BC041608|FAM159A|348378|family with sequence similarity 159, member A##NM_001042693|FAM159A|348378|family with sequence similarity 159, member A##NM_015696|GPX7|2882|glutathione peroxidase 7##AF320068|GPX7|2882|glutathione peroxidase 7##AK027683|GPX7|2882|glutathione peroxidase 7##AY358402|GPX7|2882|glutathione peroxidase 7##BC032788|GPX7|2882|glutathione peroxidase 7##DQ890863|GPX6|257202|glutathione peroxidase 6 (olfactory)##DQ894018|GPX7|2882|glutathione peroxidase 7##BC012047|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC018753|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC035820|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_001009881|ZCCHC11|23318|zinc finger, CCHC domain containing 11##NM_015269|ZCCHC11|23318|zinc finger, CCHC domain containing 11##AK307579|ZCCHC11|23318|zinc finger, CCHC domain containing 11##AK095733|ZCCHC11|23318|zinc finger, CCHC domain containing 11##BC015313|SELRC1|65260|Sel1 repeat containing 1##AK225041|SELRC1|65260|Sel1 repeat containing 1##AK225087|SELRC1|65260|Sel1 repeat containing 1##BC005992|SELRC1|65260|Sel1 repeat containing 1##AK022501|SELRC1|65260|Sel1 repeat containing 1##NM_023077|SELRC1|65260|Sel1 repeat containing 1	0.0	0.0	
chr19	12728477	12728645	reg1013602.p1	4.160	+	AK307775 NM_153358 AK298597 TSC_hg19_v1_chr19_+_12721749 AX721060 AK074877 AK297715 BC106937 BC106938	-6797	+	AB385437 CU691590 EU446833 BC038586 AB033024 NM_020714 TSC_hg19_v1_chr19_-_12721628	-7000	-	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	-66288	-	TSC_hg19_v1_chr19_-_12777530 U68382 U68567 AB209921 DQ891878 DQ895066 AB527181 U60266 BC000736	48951	-	TSC_hg19_v1_chr19_-_12777557 U05572 AK291572 AK303418 NM_000528 NM_001173498	49004	-	TSC_hg19_v1_chr19_+_12777620 NM_001099737 AK074525 AK314164	49075	+	AK307775|ZNF791|163049|zinc finger protein 791##NM_153358|ZNF791|163049|zinc finger protein 791##AK298597|ZNF791|163049|zinc finger protein 791##AK074877|ZNF791|163049|zinc finger protein 791##AK297715|ZNF791|163049|zinc finger protein 791##BC106937|ZNF791|163049|zinc finger protein 791##BC106938|ZNF791|163049|zinc finger protein 791##EU446833|ZNF490|57474|zinc finger protein 490##BC038586|ZNF490|57474|zinc finger protein 490##AB033024|ZNF490|57474|zinc finger protein 490##NM_020714|ZNF490|57474|zinc finger protein 490##BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564##U68382|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U68567|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AB209921|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ891878|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ895066|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U60266|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##BC000736|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U05572|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AK291572|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AK303418|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_000528|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_001173498|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_001099737|WDR83|84292|WD repeat domain 83##AK074525|WDR83|84292|WD repeat domain 83##AK314164|WDR83|84292|WD repeat domain 83	0.996201	0.0	
chr17	66012027	66012131	reg1015747.p1	4.159	+	BC105124 BC112073 BC036760 TSC_hg19_v1_chr17_-_65989703 AK026583 NM_181655 NM_181656	-22406	-	TSC_hg19_v1_chr17_+_65936590 AK027184	-75445	+	AK022570 TSC_hg19_v1_chr17_+_65916176	-95910	+	TSC_hg19_v1_chr17_+_66031850 NM_002266 U09559 U28386 AK024833 AK058111 AK291954 BC005978 BC013257 BC053343 BC146905	19761	+	TSC_hg19_v1_chr17_+_66031889 BC034443	19809	+	TSC_hg19_v1_chr17_+_66097706 BC045718	85619	+	BC105124|C17orf58|284018|chromosome 17 open reading frame 58##BC112073|C17orf58|284018|chromosome 17 open reading frame 58##BC036760|C17orf58|284018|chromosome 17 open reading frame 58##AK026583|C17orf58|284018|chromosome 17 open reading frame 58##NM_181655|C17orf58|284018|chromosome 17 open reading frame 58##NM_181656|C17orf58|284018|chromosome 17 open reading frame 58##AK027184|BPTF|2186|bromodomain PHD finger transcription factor##AK022570|BPTF|2186|bromodomain PHD finger transcription factor##NM_002266|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U09559|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##U28386|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK024833|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK058111|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##AK291954|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC005978|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC013257|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC053343|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC146905|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC034443|KPNA2|3838|karyopherin alpha 2 (RAG cohort 1, importin alpha 1)##BC045718|LOC100499466|100499466|uncharacterized LOC100499466	1.584955	0.052234	denovo_WM_7:31:0.323	denovo_WM_7:47:0.475	denovo_WM_7:48:0.458
chr18	8639223	8639325	reg1007206.p2	4.159	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	-29528	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	-29838	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-692368	+	AK131528 NM_015210	78094	+	AB384528 TSC_hg19_v1_chr18_+_8718600	79250	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	463348	+	BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	1.974853	0.0	
chr20	5022490	5022570	reg1010797.p1	4.159	+	BC013112 AF164142 NM_203327	-31605	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-40370	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-218336	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	71085	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	78025	-	AK300558 AK311014 NM_002592	84696	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.999559	0.0	
chr20	60742748	60742908	reg1014561.p1	4.159	+	TSC_hg19_v1_chr20_+_60718830 AK125656 AK291485 AK299881 NM_198935 BC034494 BX640848 AK308765 BC068993 AB014593 DQ890908 EU176499 AB383958	-24067	+	TSC_hg19_v1_chr20_-_60718451 BC014999 AF054185 BC001895 NM_002792	-24354	-	TSC_hg19_v1_chr20_-_60718410 AK312025 BC004427	-24406	-	TSC_hg19_v1_chr20_+_60758094 NM_015666 AK316027 AK316325 AK299147 AK299189 AK299726	15251	+	TSC_hg19_v1_chr20_-_60795335 AF140538 NM_007232	52497	-	AK291851 TSC_hg19_v1_chr20_+_60813576	70748	+	AK125656|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK291485|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK299881|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##NM_198935|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC034494|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BX640848|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AK308765|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC068993|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##AB014593|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##DQ890908|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##EU176499|SS18L1|26039|synovial sarcoma translocation gene on chromosome 18-like 1##BC014999|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##AF054185|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##BC001895|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##NM_002792|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##AK312025|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##BC004427|PSMA7|5688|proteasome (prosome, macropain) subunit, alpha type, 7##NM_015666|GTPBP5|26164|GTP binding protein 5 (putative)##AK316027|GTPBP5|26164|GTP binding protein 5 (putative)##AK316325|GTPBP5|26164|GTP binding protein 5 (putative)##AK299147|GTPBP5|26164|GTP binding protein 5 (putative)##AK299189|GTPBP5|26164|GTP binding protein 5 (putative)##AK299726|GTPBP5|26164|GTP binding protein 5 (putative)##AF140538|HRH3|11255|histamine receptor H3##NM_007232|HRH3|11255|histamine receptor H3##AK291851|OSBPL2|9885|oxysterol binding protein-like 2	0.999143	0.0	denovo_WM_7:51:0.739
chr5	149794197	149794300	reg1007245.p2	4.159	+	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	-1798	-	TSC_hg19_v1_chr5_-_149792349 M28589	-1902	-	TSC_hg19_v1_chr5_-_149792315 AB590276 BT019505 CU676294 DQ892005 DQ895194 AK292076 AK297889 AK300669 AK308929 M28588 X00497 BC018726 BC024272	-1945	-	TSC_hg19_v1_chr5_-_149829249 BC020515	34996	-	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	35043	-	TSC_hg19_v1_chr5_+_149865341 AB209107	71191	+	NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BT019505|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ892005|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##DQ895194|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK292076|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK297889|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK300669|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AK308929|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##M28588|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##X00497|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC018726|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC024272|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##BC020515|RPS14|6208|ribosomal protein S14##BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	0.0	0.0	
chr11	130023718	130023861	reg1014900.p1	4.158	+	TSC_hg19_v1_chr11_+_129991591 L23113	-32161	+	L23114 TSC_hg19_v1_chr11_+_129979349	-44450	+	AK128162 NM_001243299	-83327	+	TSC_hg19_v1_chr11_+_130029676 NM_021978	5888	+	AK314173 TSC_hg19_v1_chr11_+_130029706	5915	+	TSC_hg19_v1_chr11_+_130029713 BC030532	5952	+	L23113|APLP2|334|amyloid beta (A4) precursor-like protein 2##L23114|APLP2|334|amyloid beta (A4) precursor-like protein 2##AK128162|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_001243299|APLP2|334|amyloid beta (A4) precursor-like protein 2##NM_021978|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AK314173|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##BC030532|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)	1.044871	0.0	denovo_WM_7:87:0.912
chr1	171569612	171569740	reg1013882.p2	4.158	+	AF253978 AL096857 TSC_hg19_v1_chr1_+_171481269 AF488829	-88424	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	-114982	+	BC002780 NM_002022 Z11737	-286248	+	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	52124	-	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	141559	-	AK092254 TSC_hg19_v1_chr1_+_171711293	141611	+	AF253978|PRRC2C|23215|proline-rich coiled-coil 2C##AL096857|PRRC2C|23215|proline-rich coiled-coil 2C##AF488829|PRRC2C|23215|proline-rich coiled-coil 2C##BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4	0.974287	0.0	denovo_WM_7:-32:0.910
chr19	6280387	6280567	reg1013097.p2	4.158	+	TSC_hg19_v1_chr19_-_6279967 D14539 NM_005934	-512	-	AB463904 TSC_hg19_v1_chr19_-_6279803	-674	-	TSC_hg19_v1_chr19_-_6199558 AK056073	-80930	-	AF347024 BC112122 BC112124 NM_133492	53123	-	BC002956 NM_006012 TSC_hg19_v1_chr19_+_6361541	81024	+	TSC_hg19_v1_chr19_+_6361559 AK311973 Z50853 EF036491 DQ895823 EU176368	81136	+	D14539|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##NM_005934|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##AF347024|ACER1|125981|alkaline ceramidase 1##BC112122|ACER1|125981|alkaline ceramidase 1##BC112124|ACER1|125981|alkaline ceramidase 1##NM_133492|ACER1|125981|alkaline ceramidase 1##BC002956|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##NM_006012|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##AK311973|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##Z50853|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EF036491|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##DQ895823|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EU176368|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	0.984659	0.0	denovo_WM_7:4:0.829
chr5	116228901	116229014	reg1010850.p2	4.158	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-318443	-	TSC_hg19_v1_chr5_+_115898220 D28352	-330733	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-808236	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2095281	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2177854	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2178208	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.99975	0.0	denovo_WM_7:1:0.679
chr5	122180598	122180678	reg1011358.p1	4.158	+	TSC_hg19_v1_chr5_+_122110786 AY272044 AK002170 AB464236 BT009841 DQ890933 DQ894096 AF043453	-69826	+	AK023581 TSC_hg19_v1_chr5_+_122110776 BC003382 AF065482 AK222968	-69869	+	TSC_hg19_v1_chr5_+_122110737 AK023716 NM_003100	-69894	+	NM_014035 BC010886 BC069012 TSC_hg19_v1_chr5_+_122181284 AF139461 AY358098 CU679837 CU686699 AY044655	609	+	CU678110 TSC_hg19_v1_chr5_-_122372375 AK290321 BC002678	191726	-	TSC_hg19_v1_chr5_-_122372418 AK304053 NM_000943	191786	-	AY272044|SNX2|6643|sorting nexin 2##AK002170|SNX2|6643|sorting nexin 2##BT009841|SNX2|6643|sorting nexin 2##DQ890933|SNX2|6643|sorting nexin 2##DQ894096|SNX2|6643|sorting nexin 2##AF043453|SNX2|6643|sorting nexin 2##AK023581|SNX2|6643|sorting nexin 2##BC003382|SNX2|6643|sorting nexin 2##AF065482|SNX2|6643|sorting nexin 2##AK222968|SNX2|6643|sorting nexin 2##AK023716|SNX2|6643|sorting nexin 2##NM_003100|SNX2|6643|sorting nexin 2##NM_014035|SNX24|28966|sorting nexin 24##BC010886|SNX24|28966|sorting nexin 24##BC069012|SNX24|28966|sorting nexin 24##AF139461|SNX24|28966|sorting nexin 24##AY358098|SNX24|28966|sorting nexin 24##AY044655|SNX24|28966|sorting nexin 24##AK290321|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##BC002678|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##AK304053|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_000943|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)	0.0	0.0	
chr6	155126621	155126741	reg1011317.p1	4.158	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-71856	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-72127	+	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	-72156	+	NM_012454	284741	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	411447	+	BC020838 NM_001001346	458465	+	AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20	0.99913	0.025567	denovo_WM_7:21:0.974
chr6	164177254	164177346	reg1011217.p1	4.158	+	AL050218 TSC_hg19_v1_chr6_+_163984651	-192687	+	BC019917 TSC_hg19_v1_chr6_+_163836201 AB590716 DQ323998 EU832828 GQ129383 AY780788 AK027309	-341068	+	TSC_hg19_v1_chr6_+_163835795 AF272349	-341510	+	CU693196 TSC_hg19_v1_chr6_-_165723095 BC026278 NM_144980	1545792	-	AB026816 AF127480 NM_006661 AB020593 NM_001130690 TSC_hg19_v1_chr6_-_166075763	1898396	-	AY203946 TSC_hg19_v1_chr6_-_166076051	1898752	-	AL050218|QKI|9444|QKI, KH domain containing, RNA binding##BC019917|QKI|9444|QKI, KH domain containing, RNA binding##DQ323998|QKI|9444|QKI, KH domain containing, RNA binding##EU832828|QKI|9444|QKI, KH domain containing, RNA binding##GQ129383|QKI|9444|QKI, KH domain containing, RNA binding##AY780788|QKI|9444|QKI, KH domain containing, RNA binding##AK027309|QKI|9444|QKI, KH domain containing, RNA binding##AF272349|QKI|9444|QKI, KH domain containing, RNA binding##BC026278|C6orf118|168090|chromosome 6 open reading frame 118##NM_144980|C6orf118|168090|chromosome 6 open reading frame 118##AB026816|PDE10A|10846|phosphodiesterase 10A##AF127480|PDE10A|10846|phosphodiesterase 10A##NM_006661|PDE10A|10846|phosphodiesterase 10A##AB020593|PDE10A|10846|phosphodiesterase 10A##NM_001130690|PDE10A|10846|phosphodiesterase 10A##AY203946|LOC100132188|100132188|LP7097	0.0	0.0	
chr11	117031428	117031526	reg1011889.p1	4.157	+	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	-16444	+	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	-62444	-	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-323122	-	TSC_hg19_v1_chr11_+_117049458 AK292501	18080	+	TSC_hg19_v1_chr11_+_117049872 AF151799 BC114522 BC114959 AY358442 NM_001040455 AK292974	18415	+	TSC_hg19_v1_chr11_+_117049977 AK303023	18502	+	NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##AK292501|SIDT2|51092|SID1 transmembrane family, member 2##AF151799|SIDT2|51092|SID1 transmembrane family, member 2##BC114522|SIDT2|51092|SID1 transmembrane family, member 2##BC114959|SIDT2|51092|SID1 transmembrane family, member 2##AY358442|SIDT2|51092|SID1 transmembrane family, member 2##NM_001040455|SIDT2|51092|SID1 transmembrane family, member 2##AK292974|SIDT2|51092|SID1 transmembrane family, member 2##AK303023|SIDT2|51092|SID1 transmembrane family, member 2	0.999661	0.0	denovo_WM_7:26:0.425	denovo_WM_7:27:0.425
chr19	12839378	12839465	reg1012507.p2	4.157	+	TSC_hg19_v1_chr19_-_12834747 AF007748 AK056183 NM_001136195	-4687	-	NM_001136196 TSC_hg19_v1_chr19_-_12833473	-5938	-	TSC_hg19_v1_chr19_-_12833356 BC063679 BC072420 NM_013433 BC018314 AK299485	-6273	-	TSC_hg19_v1_chr19_-_12845478 CU677275 DQ891449 DQ894628 BC004533	6052	-	TSC_hg19_v1_chr19_-_12845497 BC015347 AK315754 AK027588	6067	-	TSC_hg19_v1_chr19_-_12845516 BC000216 NM_024038 BC001840	6101	-	AF007748|TNPO2|30000|transportin 2##AK056183|TNPO2|30000|transportin 2##NM_001136195|TNPO2|30000|transportin 2##NM_001136196|TNPO2|30000|transportin 2##BC063679|TNPO2|30000|transportin 2##BC072420|TNPO2|30000|transportin 2##NM_013433|TNPO2|30000|transportin 2##BC018314|TNPO2|30000|transportin 2##AK299485|TNPO2|30000|transportin 2##DQ891449|C19orf43|79002|chromosome 19 open reading frame 43##DQ894628|C19orf43|79002|chromosome 19 open reading frame 43##BC004533|C19orf43|79002|chromosome 19 open reading frame 43##BC015347|C19orf43|79002|chromosome 19 open reading frame 43##AK315754|C19orf43|79002|chromosome 19 open reading frame 43##AK027588|C19orf43|79002|chromosome 19 open reading frame 43##BC000216|C19orf43|79002|chromosome 19 open reading frame 43##NM_024038|C19orf43|79002|chromosome 19 open reading frame 43	1.991175	0.0	denovo_WM_7:51:0.248
chr19	58459246	58459426	reg1008629.p1	4.157	+	TSC_hg19_v1_chr19_-_58459075 BC001438 AK314094 NM_005773	-274	-	AK056113 AY695825 NM_133460 AK304632 AK293723	-12590	-	TSC_hg19_v1_chr19_-_58427961 BC025783 AK293789 BC103757 NM_152475	-31364	-	BC033933 NM_152474	26565	-	AK094748 TSC_hg19_v1_chr19_+_58513574	54166	+	TSC_hg19_v1_chr19_-_58514188 BC022533 BC036570 AK293097 AK056696 AK294037 BC037209	54835	-	BC001438|ZNF256|10172|zinc finger protein 256##AK314094|ZNF256|10172|zinc finger protein 256##NM_005773|ZNF256|10172|zinc finger protein 256##AK056113|ZNF418|147686|zinc finger protein 418##AY695825|ZNF418|147686|zinc finger protein 418##NM_133460|ZNF418|147686|zinc finger protein 418##AK304632|ZNF418|147686|zinc finger protein 418##AK293723|ZNF418|147686|zinc finger protein 418##BC025783|ZNF417|147687|zinc finger protein 417##AK293789|ZNF417|147687|zinc finger protein 417##BC103757|ZNF417|147687|zinc finger protein 417##NM_152475|ZNF417|147687|zinc finger protein 417##BC033933|C19orf18|147685|chromosome 19 open reading frame 18##NM_152474|C19orf18|147685|chromosome 19 open reading frame 18##AK094748|LOC100128398|100128398|uncharacterized LOC100128398##BC022533|ZNF606|80095|zinc finger protein 606##BC036570|ZNF606|80095|zinc finger protein 606##AK293097|ZNF606|80095|zinc finger protein 606##AK056696|ZNF606|80095|zinc finger protein 606##AK294037|ZNF606|80095|zinc finger protein 606##BC037209|ZNF606|80095|zinc finger protein 606	0.0	0.478308	CTCF.p2:-92:0.478
chr4	184659440	184659620	reg1002332.p1	4.157	+	TSC_hg19_v1_chr4_+_184580539 BC139745	-79019	+	NM_021942 NM_199053 TSC_hg19_v1_chr4_+_184580445 AL833571 AK096345 BX648499 BX647127 BX538044 BC040530 BC051724	-79081	+	CU688324 BC107432 TSC_hg19_v1_chr4_-_184580305 AK021702 AK293274 AK315515 BC017472 BC067752 NM_152682	-79288	-	TSC_hg19_v1_chr4_+_184826513 AB037813 BC146754 NM_020225	166976	+	TSC_hg19_v1_chr4_+_184827807 AK289840	168290	+	TSC_hg19_v1_chr4_+_184827885 AB384196	168381	+	BC139745|C4orf41|60684|chromosome 4 open reading frame 41##NM_021942|C4orf41|60684|chromosome 4 open reading frame 41##NM_199053|C4orf41|60684|chromosome 4 open reading frame 41##AL833571|C4orf41|60684|chromosome 4 open reading frame 41##AK096345|C4orf41|60684|chromosome 4 open reading frame 41##BX648499|C4orf41|60684|chromosome 4 open reading frame 41##BX647127|C4orf41|60684|chromosome 4 open reading frame 41##BX538044|C4orf41|60684|chromosome 4 open reading frame 41##BC040530|C4orf41|60684|chromosome 4 open reading frame 41##BC051724|C4orf41|60684|chromosome 4 open reading frame 41##BC107432|RWDD4|201965|RWD domain containing 4##AK021702|RWDD4|201965|RWD domain containing 4##AK293274|RWDD4|201965|RWD domain containing 4##AK315515|RWDD4|201965|RWD domain containing 4##BC017472|RWDD4|201965|RWD domain containing 4##BC067752|RWDD4|201965|RWD domain containing 4##NM_152682|RWDD4|201965|RWD domain containing 4##AB037813|STOX2|56977|storkhead box 2##BC146754|STOX2|56977|storkhead box 2##NM_020225|STOX2|56977|storkhead box 2##AK289840|STOX2|56977|storkhead box 2	0.0	0.0	
chr5	67570713	67570883	reg1007723.p1	4.157	+	TSC_hg19_v1_chr5_+_67511602 BC094795	-59191	+	TSC_hg19_v1_chr5_+_67511583 NM_181523	-59218	+	BC109069 BC109070 D83597 NM_005582 AK313177	-1078198	-	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	13496	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	15748	+	AK094785 NM_001242466 AK294919	17654	+	BC094795|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181523|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC109069|CD180|4064|CD180 molecule##BC109070|CD180|4064|CD180 molecule##D83597|CD180|4064|CD180 molecule##NM_005582|CD180|4064|CD180 molecule##AK313177|CD180|4064|CD180 molecule##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)	0.0	0.0	
chr6	157982992	157983099	reg1012721.p2	4.157	+	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	-180506	+	TSC_hg19_v1_chr6_-_157745183 NM_018452	-237828	-	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	-238461	-	TSC_hg19_v1_chr6_+_158244281 NM_016224 BC005022	261244	+	TSC_hg19_v1_chr6_+_158244308 AF172847 AK314360 AF131214 AF121859	261329	+	AK294480 NM_003898 TSC_hg19_v1_chr6_+_158402887	419842	+	AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_018452|TMEM242|729515|transmembrane protein 242##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_016224|SNX9|51429|sorting nexin 9##BC005022|SNX9|51429|sorting nexin 9##AF172847|SNX9|51429|sorting nexin 9##AK314360|SNX9|51429|sorting nexin 9##AF131214|SNX9|51429|sorting nexin 9##AF121859|SNX9|51429|sorting nexin 9##AK294480|SYNJ2|8871|synaptojanin 2##NM_003898|SYNJ2|8871|synaptojanin 2	0.0	0.0	
chr9	102355576	102355700	reg1014220.p2	4.157	+	AK223384 TSC_hg19_v1_chr9_+_101984563 BC001734 NM_006808 L25085	-371051	+	TSC_hg19_v1_chr9_-_101984233 NM_033087	-371395	-	TSC_hg19_v1_chr9_-_101984223 AK075172 AK074988	-371421	-	TSC_hg19_v1_chr9_-_102582187 AK057451	226527	-	D78579 NM_006981 NM_173199 NM_173200 AK226108 TSC_hg19_v1_chr9_+_102584166 X89894	228519	+	TSC_hg19_v1_chr9_+_102668935 NM_017919 AK295949 BC051790	313289	+	AK223384|SEC61B|10952|Sec61 beta subunit##BC001734|SEC61B|10952|Sec61 beta subunit##NM_006808|SEC61B|10952|Sec61 beta subunit##L25085|SEC61B|10952|Sec61 beta subunit##NM_033087|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK075172|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##AK074988|ALG2|85365|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)##D78579|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_006981|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173199|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_173200|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##AK226108|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##X89894|NR4A3|8013|nuclear receptor subfamily 4, group A, member 3##NM_017919|STX17|55014|syntaxin 17##AK295949|STX17|55014|syntaxin 17##BC051790|STX17|55014|syntaxin 17	0.999289	0.0	denovo_WM_7:-78:0.739
chr9	92103122	92103273	reg1014309.p2	4.157	+	BC054500 NM_001142287 NM_006378	-8587	-	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	-169779	+	TSC_hg19_v1_chr9_+_91926112 NM_001827 X54942 BC006458 AB527990 BT006630 CR407630 CR542118	-177039	+	BX648216 TSC_hg19_v1_chr9_-_92113005	9810	-	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	116784	+	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	1301922	-	BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##NM_001827|CKS2|1164|CDC28 protein kinase regulatory subunit 2##X54942|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BC006458|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BT006630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR407630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR542118|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2	1.97613	0.0	denovo_WM_7:76:0.968	denovo_WM_7:91:0.967
chr14	71939550	71939634	reg1013734.p2	4.156	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-565141	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-565459	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-663783	-	AF090989 AF090990 NM_015556	56449	+	AK294895 NM_001204423	459224	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	459561	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	0.999808	0.0	denovo_WM_7:-15:0.230	denovo_WM_7:-16:0.230	denovo_WM_7:-17:0.230	denovo_WM_7:-18:0.230
chr17	70417517	70417641	reg1013464.p2	4.156	+	TSC_hg19_v1_chr17_+_70117187 BC007951	-300339	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-300409	+	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	-300420	+	AK000477 TSC_hg19_v1_chr17_-_70588944	171364	-	AF331643 TSC_hg19_v1_chr17_-_71088816	671237	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	671244	-	BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##AK000477|LOC100499467|100499467|uncharacterized LOC100499467##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.0	0.0	
chr19	4876074	4876149	reg1009303.p2	4.156	+	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	-8369	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	-8446	-	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	-8466	-	NM_001080523	26767	-	TSC_hg19_v1_chr19_+_4909512 AK307239 AK303361 NM_001048201 AK074377 AK314579	33388	+	TSC_hg19_v1_chr19_+_4910185 AK289389	34067	+	AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##NM_001080523|ARRDC5|645432|arrestin domain containing 5##AK307239|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK303361|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_001048201|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK074377|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK314579|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1	1.991948	0.0	denovo_WM_7:9:0.216	denovo_WM_7:10:0.627	denovo_WM_7:25:0.658
chr4	81170095	81170223	reg1012800.p1	4.156	+	TSC_hg19_v1_chr4_+_81118656 NM_001099403 BC071584 AK292137 BC027929	-51505	+	AF275815 NM_020226	-63736	+	TSC_hg19_v1_chr4_-_80994394 NM_001145794 NM_058172 BC107876	-175692	-	NM_004464 NM_033143 AK312065 TSC_hg19_v1_chr4_+_81187819 AK291962 AF535149 AF171928 M37825 BC131502 BC074858 BC074859 AB016517 AB463636 AF355187	17700	+	BC034296 NM_001206997 NM_152770 AK128642 AY349359 DQ893197 DQ893198 DQ896152 DQ896153 DQ896154 DQ896534 DQ896535	86738	+	M22491 NM_001201 BC096269 BC096270 BC096271 BC117514	781983	+	NM_001099403|PRDM8|56978|PR domain containing 8##BC071584|PRDM8|56978|PR domain containing 8##AK292137|PRDM8|56978|PR domain containing 8##BC027929|PRDM8|56978|PR domain containing 8##AF275815|PRDM8|56978|PR domain containing 8##NM_020226|PRDM8|56978|PR domain containing 8##NM_001145794|ANTXR2|118429|anthrax toxin receptor 2##NM_058172|ANTXR2|118429|anthrax toxin receptor 2##BC107876|ANTXR2|118429|anthrax toxin receptor 2##NM_004464|FGF5|2250|fibroblast growth factor 5##NM_033143|FGF5|2250|fibroblast growth factor 5##AK312065|FGF5|2250|fibroblast growth factor 5##AK291962|FGF5|2250|fibroblast growth factor 5##AF535149|FGF5|2250|fibroblast growth factor 5##AF171928|FGF5|2250|fibroblast growth factor 5##M37825|FGF5|2250|fibroblast growth factor 5##BC131502|FGF5|2250|fibroblast growth factor 5##BC074858|FGF5|2250|fibroblast growth factor 5##BC074859|FGF5|2250|fibroblast growth factor 5##AB016517|FGF5|2250|fibroblast growth factor 5##AF355187|FGF5|2250|fibroblast growth factor 5##BC034296|C4orf22|255119|chromosome 4 open reading frame 22##NM_001206997|C4orf22|255119|chromosome 4 open reading frame 22##NM_152770|C4orf22|255119|chromosome 4 open reading frame 22##AK128642|C4orf22|255119|chromosome 4 open reading frame 22##AY349359|C4orf22|255119|chromosome 4 open reading frame 22##DQ893197|C4orf22|255119|chromosome 4 open reading frame 22##DQ893198|C4orf22|255119|chromosome 4 open reading frame 22##DQ896152|C4orf22|255119|chromosome 4 open reading frame 22##DQ896153|C4orf22|255119|chromosome 4 open reading frame 22##DQ896154|C4orf22|255119|chromosome 4 open reading frame 22##DQ896534|C4orf22|255119|chromosome 4 open reading frame 22##DQ896535|C4orf22|255119|chromosome 4 open reading frame 22##M22491|BMP3|651|bone morphogenetic protein 3##NM_001201|BMP3|651|bone morphogenetic protein 3##BC096269|BMP3|651|bone morphogenetic protein 3##BC096270|BMP3|651|bone morphogenetic protein 3##BC096271|BMP3|651|bone morphogenetic protein 3##BC117514|BMP3|651|bone morphogenetic protein 3	0.0	0.0	
chr5	137468838	137468924	reg1007203.p2	4.156	+	BC144497 AY009402 BC144001 AB057725 NM_058244 AB590697	-49202	+	TSC_hg19_v1_chr5_-_137368794 NM_001101800 NM_001101801 NM_016603	-100091	-	TSC_hg19_v1_chr5_-_137368776 AK314224	-100105	-	U90450 AK312181 AF067724 BC026182 NM_003551	6222	-	BC008039 BC008076 AB384833 AB209079 TSC_hg19_v1_chr5_-_137514319 AK310380 AK289951 AK293621 AK297756 AK299694 AK312333 AK225928 AL136823 NM_001164326 NM_006696 NM_139199	45452	-	NM_005733	45535	+	BC144497|WNT8A|7478|wingless-type MMTV integration site family, member 8A##AY009402|WNT8A|7478|wingless-type MMTV integration site family, member 8A##BC144001|WNT8A|7478|wingless-type MMTV integration site family, member 8A##AB057725|WNT8A|7478|wingless-type MMTV integration site family, member 8A##NM_058244|WNT8A|7478|wingless-type MMTV integration site family, member 8A##NM_001101800|FAM13B|51306|family with sequence similarity 13, member B##NM_001101801|FAM13B|51306|family with sequence similarity 13, member B##NM_016603|FAM13B|51306|family with sequence similarity 13, member B##AK314224|FAM13B|51306|family with sequence similarity 13, member B##U90450|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AK312181|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##AF067724|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##BC026182|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##NM_003551|NME5|8382|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)##BC008039|BRD8|10902|bromodomain containing 8##BC008076|BRD8|10902|bromodomain containing 8##AB209079|BRD8|10902|bromodomain containing 8##AK310380|BRD8|10902|bromodomain containing 8##AK289951|BRD8|10902|bromodomain containing 8##AK293621|BRD8|10902|bromodomain containing 8##AK297756|BRD8|10902|bromodomain containing 8##AK312333|BRD8|10902|bromodomain containing 8##AK225928|BRD8|10902|bromodomain containing 8##AL136823|BRD8|10902|bromodomain containing 8##NM_001164326|BRD8|10902|bromodomain containing 8##NM_006696|BRD8|10902|bromodomain containing 8##NM_139199|BRD8|10902|bromodomain containing 8##NM_005733|KIF20A|10112|kinesin family member 20A	1.907911	0.0	denovo_WM_7:83:0.783
chr7	72939739	72939818	reg1008599.p1	4.156	+	TSC_hg19_v1_chr7_-_72936624 AB032253 AF072810 NM_032408	-3163	-	TSC_hg19_v1_chr7_-_72936538 AF084479	-3229	-	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	-3295	-	TSC_hg19_v1_chr7_-_72971945 CU679393 DQ890556 DQ893716 BC001967 AJ223979 X89985 AK290091 BC009548	32155	-	TSC_hg19_v1_chr7_-_72972023 BC000956 NM_001197244 NM_001707	32264	-	TSC_hg19_v1_chr7_-_72992678 AK302265	52941	-	AB032253|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF072810|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##NM_032408|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##DQ890556|BCL7B|9275|B-cell CLL/lymphoma 7B##DQ893716|BCL7B|9275|B-cell CLL/lymphoma 7B##BC001967|BCL7B|9275|B-cell CLL/lymphoma 7B##AJ223979|BCL7B|9275|B-cell CLL/lymphoma 7B##X89985|BCL7B|9275|B-cell CLL/lymphoma 7B##AK290091|BCL7B|9275|B-cell CLL/lymphoma 7B##BC009548|BCL7B|9275|B-cell CLL/lymphoma 7B##BC000956|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001197244|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001707|BCL7B|9275|B-cell CLL/lymphoma 7B##AK302265|TBL2|26608|transducin (beta)-like 2	0.999052	0.0	denovo_WM_7:-16:0.239	denovo_WM_7:-17:0.239	denovo_WM_7:-18:0.239	denovo_WM_7:-19:0.239
chr8	73846617	73846716	reg1013141.p1	4.156	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-397023	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-858832	-	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-1089958	-	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	74446	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	158776	-	BC150551 BC150552 NM_001243237	325070	-	AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301	0.999352	0.0	
chr8	75121465	75121548	reg1015714.p1	4.156	+	NM_001195797 NM_015364 BC020690 AF168121 AB590737 AB446498	-217886	+	NM_001040613 NM_017866 TSC_hg19_v1_chr8_+_74888429 BC002748	-233089	+	TSC_hg19_v1_chr8_-_74884503 BC093065 AL832244 NM_001204857 NM_001204858 NM_001204859 NM_001204860 NM_001204863 NM_001204864 NM_005648	-236995	-	BX537756 BC139832 BC098299 BC098314 BC099736 BC113856 BC114464 NM_020647 BC140875 BC140876	112022	-	TSC_hg19_v1_chr8_+_75262637 AB551556 AB551557 AB551558 NM_018972 BC024939 BC035450 NM_001040875 AK292572 AK295594 Y17849	141184	+	CR749657 NM_015886	615265	+	NM_001195797|LY96|23643|lymphocyte antigen 96##NM_015364|LY96|23643|lymphocyte antigen 96##BC020690|LY96|23643|lymphocyte antigen 96##AF168121|LY96|23643|lymphocyte antigen 96##AB446498|LY96|23643|lymphocyte antigen 96##NM_001040613|TMEM70|54968|transmembrane protein 70##NM_017866|TMEM70|54968|transmembrane protein 70##BC002748|TMEM70|54968|transmembrane protein 70##BC093065|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##AL832244|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204857|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204858|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204859|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204860|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204863|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_001204864|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##NM_005648|TCEB1|6921|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)##BX537756|JPH1|56704|junctophilin 1##BC139832|JPH1|56704|junctophilin 1##BC098299|JPH1|56704|junctophilin 1##BC098314|JPH1|56704|junctophilin 1##BC099736|JPH1|56704|junctophilin 1##BC113856|JPH1|56704|junctophilin 1##BC114464|JPH1|56704|junctophilin 1##NM_020647|JPH1|56704|junctophilin 1##BC140875|JPH1|56704|junctophilin 1##BC140876|JPH1|56704|junctophilin 1##AB551556|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AB551557|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AB551558|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##NM_018972|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##BC024939|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##BC035450|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##NM_001040875|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AK292572|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##AK295594|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##Y17849|GDAP1|54332|ganglioside-induced differentiation-associated protein 1##CR749657|PI15|51050|peptidase inhibitor 15##NM_015886|PI15|51050|peptidase inhibitor 15	0.991153	0.0	denovo_WM_7:81:0.243	denovo_WM_7:82:0.243	denovo_WM_7:83:0.243	denovo_WM_7:84:0.243
chr9	16258831	16258934	reg1009819.p1	4.156	+	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	-705861	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-747922	-	AF098483 AF098482 NM_021144	-748635	-	TSC_hg19_v1_chr9_-_16727889 AY438376	469015	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	611785	-	TSC_hg19_v1_chr9_-_16870747 CR933649 AK299073 NM_017637	611884	-	AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AY438376|BNC2|54796|basonuclin 2##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2##CR933649|BNC2|54796|basonuclin 2##AK299073|BNC2|54796|basonuclin 2##NM_017637|BNC2|54796|basonuclin 2	0.023038	0.0	
chr11	46911275	46911443	reg1016852.p1	4.155	+	TSC_hg19_v1_chr11_-_46867841 NM_001008938 NM_014756	-43506	-	TSC_hg19_v1_chr11_-_46867830 BC111043 AK092678 AX747668 BC017856 BC070136	-43547	-	TSC_hg19_v1_chr11_+_46740780 BC051332 AK222775 AK222777 AK293326 EU832664 EU832742 AB591029 V00595	-170573	+	TSC_hg19_v1_chr11_-_46940102 AB384531 AB231861 BC136667 BC136668 AB084910 NM_002334 BC110808	28703	-	TSC_hg19_v1_chr11_+_46958328 AK316318 NM_001003676 NM_001003677 NM_001003678 NM_024113 AK315639 BC001860 BC009455 AL136575 BC052291 BC013988 AK300813 AK025863 AK293609 AB528079 AM393584 AM393807 CR457351 CU679361 CU680726	46933	+	AK301785 AL834337 EU832352 EU832437 AK300347 BC036823 AK027482 TSC_hg19_v1_chr11_-_47198413 AK304541 BC030148	287040	-	NM_001008938|CKAP5|9793|cytoskeleton associated protein 5##NM_014756|CKAP5|9793|cytoskeleton associated protein 5##BC111043|CKAP5|9793|cytoskeleton associated protein 5##BC017856|CKAP5|9793|cytoskeleton associated protein 5##BC070136|CKAP5|9793|cytoskeleton associated protein 5##BC051332|F2|2147|coagulation factor II (thrombin)##AK222775|F2|2147|coagulation factor II (thrombin)##AK222777|F2|2147|coagulation factor II (thrombin)##AK293326|F2|2147|coagulation factor II (thrombin)##EU832664|F2|2147|coagulation factor II (thrombin)##EU832742|F2|2147|coagulation factor II (thrombin)##V00595|F2|2147|coagulation factor II (thrombin)##AB231861|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136667|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136668|LRP4|4038|low density lipoprotein receptor-related protein 4##AB084910|LRP4|4038|low density lipoprotein receptor-related protein 4##NM_002334|LRP4|4038|low density lipoprotein receptor-related protein 4##AK316318|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003676|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003677|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003678|C11orf49|79096|chromosome 11 open reading frame 49##NM_024113|C11orf49|79096|chromosome 11 open reading frame 49##AK315639|C11orf49|79096|chromosome 11 open reading frame 49##BC001860|C11orf49|79096|chromosome 11 open reading frame 49##BC009455|C11orf49|79096|chromosome 11 open reading frame 49##AL136575|C11orf49|79096|chromosome 11 open reading frame 49##BC052291|C11orf49|79096|chromosome 11 open reading frame 49##BC013988|C11orf49|79096|chromosome 11 open reading frame 49##AK300813|C11orf49|79096|chromosome 11 open reading frame 49##AK025863|C11orf49|79096|chromosome 11 open reading frame 49##AK293609|C11orf49|79096|chromosome 11 open reading frame 49##AM393584|C11orf49|79096|chromosome 11 open reading frame 49##AM393807|C11orf49|79096|chromosome 11 open reading frame 49##CR457351|C11orf49|79096|chromosome 11 open reading frame 49##AK301785|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AL834337|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832352|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832437|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK300347|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC036823|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK027482|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK304541|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC030148|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2	0.0	0.936318	CTCF.p2:-10:0.936
chr15	66721177	66721262	reg1014410.p1	4.155	+	TSC_hg19_v1_chr15_+_66694219 AK294322	-27002	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	-41946	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	-42057	+	AF093593 AB464224 AK292051 TSC_hg19_v1_chr15_-_66790104 BC014315 AK024763 AK312018 NM_006049	68887	-	L20868 BC005817 BC009888 BC014653 BC010151 BC007996 BC040610 AB208977 BC001365 BC018840 BC095427 TSC_hg19_v1_chr15_-_66797186 AK297490 AK291117 AK297484 AK130784 AK223057 AK291859 AK294113 AK298224 BC066925 D23660 NM_000968	75953	-	AK023175 NM_017975 BX640701	76223	+	AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AF093593|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK292051|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##BC014315|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK024763|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##AK312018|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##NM_006049|SNAPC5|10302|small nuclear RNA activating complex, polypeptide 5, 19kDa##L20868|RPL4|6124|ribosomal protein L4##BC005817|RPL4|6124|ribosomal protein L4##BC009888|RPL4|6124|ribosomal protein L4##BC014653|RPL4|6124|ribosomal protein L4##BC010151|RPL4|6124|ribosomal protein L4##BC007996|RPL4|6124|ribosomal protein L4##BC040610|RPL4|6124|ribosomal protein L4##AB208977|RPL4|6124|ribosomal protein L4##BC001365|RPL4|6124|ribosomal protein L4##BC018840|RPL4|6124|ribosomal protein L4##BC095427|RPL4|6124|ribosomal protein L4##AK291117|RPL4|6124|ribosomal protein L4##AK297484|RPL4|6124|ribosomal protein L4##AK130784|RPL4|6124|ribosomal protein L4##AK223057|RPL4|6124|ribosomal protein L4##AK291859|RPL4|6124|ribosomal protein L4##AK294113|RPL4|6124|ribosomal protein L4##BC066925|RPL4|6124|ribosomal protein L4##D23660|RPL4|6124|ribosomal protein L4##NM_000968|RPL4|6124|ribosomal protein L4##AK023175|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##NM_017975|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)##BX640701|ZWILCH|55055|Zwilch, kinetochore associated, homolog (Drosophila)	1.733346	0.0	denovo_WM_7:-89:0.319	denovo_WM_7:-90:0.310	denovo_WM_7:-105:0.469
chr5	56525087	56525229	reg1012654.p2	4.155	+	NM_001127236 AL136844 AB463051 AM392551 AM393442	-15230	+	BC113004 NM_001127235	-53885	+	TSC_hg19_v1_chr5_+_56469911 AL161991 AY226828	-55261	+	BC137470 BC137473 BX648504 NM_001017992	253436	-	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	1230778	-	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	1262136	+	NM_001127236|GPBP1|65056|GC-rich promoter binding protein 1##AL136844|GPBP1|65056|GC-rich promoter binding protein 1##AM392551|GPBP1|65056|GC-rich promoter binding protein 1##AM393442|GPBP1|65056|GC-rich promoter binding protein 1##BC113004|GPBP1|65056|GC-rich promoter binding protein 1##NM_001127235|GPBP1|65056|GC-rich promoter binding protein 1##AL161991|GPBP1|65056|GC-rich promoter binding protein 1##AY226828|GPBP1|65056|GC-rich promoter binding protein 1##BC137470|ACTBL2|345651|actin, beta-like 2##BC137473|ACTBL2|345651|actin, beta-like 2##BX648504|ACTBL2|345651|actin, beta-like 2##NM_001017992|ACTBL2|345651|actin, beta-like 2##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane	1.992138	0.0	denovo_WM_7:-70:0.212	denovo_WM_7:-92:0.217
chr7	35846876	35846978	reg1004647.p2	4.155	+	DQ232879 TSC_hg19_v1_chr7_+_35840853 BC067264 AK300601 AB209677	-6075	+	TSC_hg19_v1_chr7_+_35840828 AB073389 AK223225 AK223241 AK297883 AK298453 BC025987 BX571755 S72008 BC093640 BC093642	-6094	+	NM_001011553 NM_001242956 NM_001788 TSC_hg19_v1_chr7_+_35840766 BC107718 AK290545	-6217	+	TSC_hg19_v1_chr7_+_36192789 NM_030636	345878	+	TSC_hg19_v1_chr7_+_36192862 AK027386 BC065518	345956	+	TSC_hg19_v1_chr7_+_36193025 AB051493	346128	+	DQ232879|SEPT7|989|septin 7##BC067264|SEPT7|989|septin 7##AK300601|SEPT7|989|septin 7##AB209677|SEPT7|989|septin 7##AB073389|SEPT7|989|septin 7##AK223225|SEPT7|989|septin 7##AK223241|SEPT7|989|septin 7##AK297883|SEPT7|989|septin 7##AK298453|SEPT7|989|septin 7##BC025987|SEPT7|989|septin 7##BX571755|SEPT7|989|septin 7##S72008|SEPT7|989|septin 7##BC093640|SEPT7|989|septin 7##BC093642|SEPT7|989|septin 7##NM_001011553|SEPT7|989|septin 7##NM_001242956|SEPT7|989|septin 7##NM_001788|SEPT7|989|septin 7##BC107718|SEPT7|989|septin 7##AK290545|SEPT7|989|septin 7##NM_030636|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AK027386|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##BC065518|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AB051493|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1	1.996934	0.0	denovo_WM_7:42:0.864	denovo_WM_7:57:0.883
chr9	140018140	140018260	reg1003681.p3	4.155	+	NM_013379 TSC_hg19_v1_chr9_-_140009194	-9006	-	AK292112 TSC_hg19_v1_chr9_-_140009178	-9025	-	BC011907 BC016961 DQ891460 DQ894637 TSC_hg19_v1_chr9_-_140009169	-9031	-	TSC_hg19_v1_chr9_-_140024189 BC018639	6035	-	TSC_hg19_v1_chr9_+_140032795 L13266	14607	+	TSC_hg19_v1_chr9_+_140033607 NM_000832 NM_001185090 NM_001185091 NM_007327 NM_021569 AB208999 D13515 AB208918 L05666 AB590080 L13268	15578	+	NM_013379|DPP7|29952|dipeptidyl-peptidase 7##AK292112|DPP7|29952|dipeptidyl-peptidase 7##BC011907|DPP7|29952|dipeptidyl-peptidase 7##BC016961|DPP7|29952|dipeptidyl-peptidase 7##DQ891460|DPP7|29952|dipeptidyl-peptidase 7##DQ894637|DPP7|29952|dipeptidyl-peptidase 7##L13266|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_000832|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185090|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_001185091|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_007327|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##NM_021569|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208999|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##D13515|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##AB208918|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L05666|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1##L13268|GRIN1|2902|glutamate receptor, ionotropic, N-methyl D-aspartate 1	0.994718	0.0	denovo_WM_7:72:0.309	denovo_WM_7:73:0.309	denovo_WM_7:74:0.309
chr9	23783672	23783794	reg1014800.p1	4.155	+	AJ290954 TSC_hg19_v1_chr9_+_22447458 AK130018	-1336284	+	AB464510 TSC_hg19_v1_chr9_+_22447162	-1336620	+	TSC_hg19_v1_chr9_+_22446846 AK096011 NM_022160 BC130435 BC130437	-1336896	+	BC030692 NM_001171197	37744	-	TSC_hg19_v1_chr9_-_23821819 BC035004	38080	-	BC042393 NM_001171195 TSC_hg19_v1_chr9_-_23821847	38111	-	AJ290954|DMRTA1|63951|DMRT-like family A1##AK130018|DMRTA1|63951|DMRT-like family A1##AK096011|DMRTA1|63951|DMRT-like family A1##NM_022160|DMRTA1|63951|DMRT-like family A1##BC130435|DMRTA1|63951|DMRT-like family A1##BC130437|DMRTA1|63951|DMRT-like family A1##BC030692|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_001171197|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC035004|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC042393|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_001171195|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	0.768269	0.0	denovo_WM_7:65:0.671
chr10	27145349	27145472	reg1015294.p1	4.154	+	TSC_hg19_v1_chr10_-_27057776 AK315914	-87593	-	TSC_hg19_v1_chr10_+_26986597 AK024802 AK223414 AB210838 NM_014317 BC063635 BC049211 AF118395	-158764	+	AK096048 TSC_hg19_v1_chr10_-_26986612	-158826	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	4430	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	4529	-	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	4595	-	AK315914|ABI1|10006|abl-interactor 1##AK024802|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AK223414|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AB210838|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##NM_014317|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC063635|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##BC049211|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##AF118395|PDSS1|23590|prenyl (decaprenyl) diphosphate synthase, subunit 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1	1.974144	0.0	denovo_WM_7:-25:0.750	denovo_WM_7:-40:0.770
chr15	59529375	59529555	reg1016974.p2	4.154	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-30413	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-132094	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-170387	+	AB290177 TSC_hg19_v1_chr15_-_59665055	135589	-	TSC_hg19_v1_chr15_-_59665065 AK291688	135601	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	135605	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	0.920866	0.0	denovo_WM_7:-19:0.233	denovo_WM_7:-20:0.543
chr16	76337709	76337849	reg1015331.p1	4.154	+	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	-26539	+	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	-656072	+	BC013246 CU678582 DQ892301 DQ895500 TSC_hg19_v1_chr16_-_75681564 BC004132 D31890 AF285758 AK126584 D32053 AK315687 NM_001130089 NM_005548	-656218	-	NM_138994 AK057327 BC017266	5976	+	TSC_hg19_v1_chr16_+_77224857 BC024277 NM_014940	887063	+	AK023374 TSC_hg19_v1_chr16_+_77224865	887106	+	AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4##AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC013246|KARS|3735|lysyl-tRNA synthetase##DQ892301|KARS|3735|lysyl-tRNA synthetase##DQ895500|KARS|3735|lysyl-tRNA synthetase##BC004132|KARS|3735|lysyl-tRNA synthetase##D31890|KARS|3735|lysyl-tRNA synthetase##AF285758|KARS|3735|lysyl-tRNA synthetase##AK126584|KARS|3735|lysyl-tRNA synthetase##D32053|KARS|3735|lysyl-tRNA synthetase##AK315687|KARS|3735|lysyl-tRNA synthetase##NM_001130089|KARS|3735|lysyl-tRNA synthetase##NM_005548|KARS|3735|lysyl-tRNA synthetase##NM_138994|CNTNAP4|85445|contactin associated protein-like 4##AK057327|CNTNAP4|85445|contactin associated protein-like 4##BC017266|CNTNAP4|85445|contactin associated protein-like 4##BC024277|MON1B|22879|MON1 homolog B (yeast)##NM_014940|MON1B|22879|MON1 homolog B (yeast)##AK023374|MON1B|22879|MON1 homolog B (yeast)	0.012678	0.0	
chr17	27117503	27117650	reg1005689.p1	4.154	+	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	-46507	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	-61762	+	NM_001160407	-63628	-	TSC_hg19_v1_chr17_-_27139467 AK095569	21871	-	BC021228 TSC_hg19_v1_chr17_-_27169811 BX647766 AK299477 AK001562 AK057665 NM_001077498 NM_018182	52214	-	TSC_hg19_v1_chr17_+_27182033 AB049388 AK023342 AY007435 BX537542 BC019094 NM_005702 CU676380 DQ892626 DQ895866 AF082657 AF082658	64447	+	NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_001160407|TLCD1|116238|TLC domain containing 1##AK095569|C17orf63|55731|chromosome 17 open reading frame 63##BC021228|C17orf63|55731|chromosome 17 open reading frame 63##BX647766|C17orf63|55731|chromosome 17 open reading frame 63##AK299477|C17orf63|55731|chromosome 17 open reading frame 63##AK001562|C17orf63|55731|chromosome 17 open reading frame 63##AK057665|C17orf63|55731|chromosome 17 open reading frame 63##NM_001077498|C17orf63|55731|chromosome 17 open reading frame 63##NM_018182|C17orf63|55731|chromosome 17 open reading frame 63##AB049388|ERAL1|26284|Era G-protein-like 1 (E. coli)##AK023342|ERAL1|26284|Era G-protein-like 1 (E. coli)##AY007435|ERAL1|26284|Era G-protein-like 1 (E. coli)##BX537542|ERAL1|26284|Era G-protein-like 1 (E. coli)##BC019094|ERAL1|26284|Era G-protein-like 1 (E. coli)##NM_005702|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ892626|ERAL1|26284|Era G-protein-like 1 (E. coli)##DQ895866|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082657|ERAL1|26284|Era G-protein-like 1 (E. coli)##AF082658|ERAL1|26284|Era G-protein-like 1 (E. coli)	0.0	0.0	
chr6	86127537	86127717	reg1012187.p1	4.154	+	HQ258462 NM_001080508 BC157841 BC132715	-653702	-	AK310179 BC040697 TSC_hg19_v1_chr6_-_85473172	-654457	-	TSC_hg19_v1_chr6_-_85472330 AJ010278	-655302	-	NM_001204813 NM_002526 TSC_hg19_v1_chr6_+_86159433	31745	+	TSC_hg19_v1_chr6_+_86159827 AK314661 AX772810 X55740 BC015940 AK075008 BC065937 DQ186653	32188	+	BC046520 AY044865 CU686683 TSC_hg19_v1_chr6_-_86303440 BC095419	175766	-	HQ258462|TBX18|9096|T-box 18##NM_001080508|TBX18|9096|T-box 18##BC157841|TBX18|9096|T-box 18##BC132715|TBX18|9096|T-box 18##AK310179|TBX18|9096|T-box 18##BC040697|TBX18|9096|T-box 18##AJ010278|TBX18|9096|T-box 18##NM_001204813|NT5E|4907|5'-nucleotidase, ecto (CD73)##NM_002526|NT5E|4907|5'-nucleotidase, ecto (CD73)##AK314661|NT5E|4907|5'-nucleotidase, ecto (CD73)##X55740|NT5E|4907|5'-nucleotidase, ecto (CD73)##BC015940|NT5E|4907|5'-nucleotidase, ecto (CD73)##AK075008|NT5E|4907|5'-nucleotidase, ecto (CD73)##BC065937|NT5E|4907|5'-nucleotidase, ecto (CD73)##DQ186653|NT5E|4907|5'-nucleotidase, ecto (CD73)##BC046520|SNX14|57231|sorting nexin 14##AY044865|SNX14|57231|sorting nexin 14##BC095419|SNX14|57231|sorting nexin 14	0.998696	0.0	
chr7	74267849	74267964	reg1010317.p1	4.154	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	-67	-	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	-79554	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-195784	+	TSC_hg19_v1_chr7_-_74306679 BC002581	38769	-	TSC_hg19_v1_chr7_-_74306685 AK303473 AK307228 AK309007	38777	-	TSC_hg19_v1_chr7_-_74306725 BC095487	38815	-	AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC002581|STAG3L2|442582|stromal antigen 3-like 2##AK303473|STAG3L2|442582|stromal antigen 3-like 2##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2	0.070441	0.0	
chrX	117305038	117305181	reg1010534.p1	4.154	+	AK302713 NM_001168301	-53807	-	AL591986 TSC_hg19_v1_chrX_-_117250764 AK316509 NM_001168302 NM_001168303	-54384	-	AK296324 NM_001168299	-185781	-	TSC_hg19_v1_chrX_+_117480068 NM_001184965 NM_001184966 NM_019045 AK127556 BX537578 AL833605 BX538087 AK299711 BC028697 BX648150	175056	+	TSC_hg19_v1_chrX_+_117480490 AM393332 AM393787 EU831942 EU832037 AK304432	175353	+	TSC_hg19_v1_chrX_+_117526665 AL834210	221578	+	AK302713|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168301|KLHL13|90293|kelch-like 13 (Drosophila)##AL591986|KLHL13|90293|kelch-like 13 (Drosophila)##AK316509|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168302|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168303|KLHL13|90293|kelch-like 13 (Drosophila)##AK296324|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168299|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001184965|WDR44|54521|WD repeat domain 44##NM_001184966|WDR44|54521|WD repeat domain 44##NM_019045|WDR44|54521|WD repeat domain 44##AK127556|WDR44|54521|WD repeat domain 44##BX537578|WDR44|54521|WD repeat domain 44##AL833605|WDR44|54521|WD repeat domain 44##BX538087|WDR44|54521|WD repeat domain 44##AK299711|WDR44|54521|WD repeat domain 44##BC028697|WDR44|54521|WD repeat domain 44##BX648150|WDR44|54521|WD repeat domain 44##AM393332|WDR44|54521|WD repeat domain 44##AM393787|WDR44|54521|WD repeat domain 44##EU831942|WDR44|54521|WD repeat domain 44##EU832037|WDR44|54521|WD repeat domain 44##AK304432|WDR44|54521|WD repeat domain 44##AL834210|WDR44|54521|WD repeat domain 44	0.988273	0.0	denovo_WM_7:-51:0.424	denovo_WM_7:-52:0.424
chr15	66649018	66649152	reg1000951.p1	4.153	+	AK000523 TSC_hg19_v1_chr15_-_66649024 AK299233 BC000870 NM_017858	-62	-	TSC_hg19_v1_chr15_+_66585931 NM_001143688 AK095407	-63186	+	NM_133375 AK295392 BC022089	-63440	+	TSC_hg19_v1_chr15_+_66679214 NM_002755	30077	+	TSC_hg19_v1_chr15_+_66679272 AK291500 AK312356	30188	+	TSC_hg19_v1_chr15_+_66694219 AK294322	45132	+	AK000523|TIPIN|54962|TIMELESS interacting protein##AK299233|TIPIN|54962|TIMELESS interacting protein##BC000870|TIPIN|54962|TIMELESS interacting protein##NM_017858|TIPIN|54962|TIMELESS interacting protein##NM_001143688|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK095407|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##NM_002755|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK291500|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK312356|MAP2K1|5604|mitogen-activated protein kinase kinase 1##AK294322|MAP2K1|5604|mitogen-activated protein kinase kinase 1	0.0	0.0	
chr20	43661587	43661751	reg1016713.p2	4.153	+	AK315238 U60207 TSC_hg19_v1_chr20_+_43595176 BC058916 BC039023 U18297	-66478	+	NM_006282 TSC_hg19_v1_chr20_+_43595152 AB209315 BC029511 AK309169 AK225326 BC005231 BC015332 BC038850 CR933633 BC093768	-66523	+	AB590243 BT020008 BT020009 CR456765 CU677113 DQ891151 EU176561 TSC_hg19_v1_chr20_-_43589038 AK129538 U58970 BC014907 AK222952 BC001763 BC007423 AK000594 BC006573 AB085681 AK302128 AK307655 NM_006809	-72615	-	BC132957 BC132959 BC144234 TSC_hg19_v1_chr20_-_43729732 AK289735 NM_002251	68020	-	CU691668 AY038181 BC039173 AY358822 NM_145652	82098	-	AB464352 AY358678 AY037803 NM_080869	91427	-	AK315238|STK4|6789|serine/threonine kinase 4##U60207|STK4|6789|serine/threonine kinase 4##BC058916|STK4|6789|serine/threonine kinase 4##BC039023|STK4|6789|serine/threonine kinase 4##U18297|STK4|6789|serine/threonine kinase 4##NM_006282|STK4|6789|serine/threonine kinase 4##AB209315|STK4|6789|serine/threonine kinase 4##BC029511|STK4|6789|serine/threonine kinase 4##AK309169|STK4|6789|serine/threonine kinase 4##AK225326|STK4|6789|serine/threonine kinase 4##BC005231|STK4|6789|serine/threonine kinase 4##BC015332|STK4|6789|serine/threonine kinase 4##BC038850|STK4|6789|serine/threonine kinase 4##CR933633|STK4|6789|serine/threonine kinase 4##BC093768|STK4|6789|serine/threonine kinase 4##BT020008|TOMM34|10953|translocase of outer mitochondrial membrane 34##BT020009|TOMM34|10953|translocase of outer mitochondrial membrane 34##CR456765|TOMM34|10953|translocase of outer mitochondrial membrane 34##DQ891151|TOMM34|10953|translocase of outer mitochondrial membrane 34##EU176561|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK129538|TOMM34|10953|translocase of outer mitochondrial membrane 34##U58970|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC014907|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK222952|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC001763|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC007423|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK000594|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC006573|TOMM34|10953|translocase of outer mitochondrial membrane 34##AB085681|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK302128|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK307655|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006809|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC132957|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC132959|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##BC144234|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AK289735|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##NM_002251|KCNS1|3787|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1##AY038181|WFDC5|149708|WAP four-disulfide core domain 5##BC039173|WFDC5|149708|WAP four-disulfide core domain 5##AY358822|WFDC5|149708|WAP four-disulfide core domain 5##NM_145652|WFDC5|149708|WAP four-disulfide core domain 5##AY358678|WFDC12|128488|WAP four-disulfide core domain 12##AY037803|WFDC12|128488|WAP four-disulfide core domain 12##NM_080869|WFDC12|128488|WAP four-disulfide core domain 12	0.0	0.0	
chr2	63815616	63815796	reg1002447.p1	4.153	+	TSC_hg19_v1_chr2_-_63815583 BX538331 AK055030 AL833623	-89	-	TSC_hg19_v1_chr2_-_63815560 AK310290	-166	-	NM_014562 TSC_hg19_v1_chr2_+_63277964 AK095680 AK297308 BC007621	-537741	+	NM_005917	36	+	TSC_hg19_v1_chr2_-_63815908 NM_015910	141	-	TSC_hg19_v1_chr2_+_63816101 AK312331 BC001484 D55654 AK307273	407	+	BX538331|WDPCP|51057|WD repeat containing planar cell polarity effector##AK055030|WDPCP|51057|WD repeat containing planar cell polarity effector##AL833623|WDPCP|51057|WD repeat containing planar cell polarity effector##AK310290|WDPCP|51057|WD repeat containing planar cell polarity effector##NM_014562|OTX1|5013|orthodenticle homeobox 1##AK095680|OTX1|5013|orthodenticle homeobox 1##AK297308|OTX1|5013|orthodenticle homeobox 1##BC007621|OTX1|5013|orthodenticle homeobox 1##NM_005917|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##NM_015910|WDPCP|51057|WD repeat containing planar cell polarity effector##AK312331|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##BC001484|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##D55654|MDH1|4190|malate dehydrogenase 1, NAD (soluble)##AK307273|MDH1|4190|malate dehydrogenase 1, NAD (soluble)	0.0	0.0	
chr4	173672279	173672437	reg1011303.p1	4.153	+	NM_001034845 BC047551 BC144036 BC144037 BC063015	-937714	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-2660944	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-2661160	-	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	417594	+	BC043556 TSC_hg19_v1_chr4_-_174090314	417952	-	BC040577 TSC_hg19_v1_chr4_-_174090813	418449	-	NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.0	0.0	
chr7	20012698	20012822	reg1009956.p1	4.153	+	BX648384 NM_152774	-200357	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-264114	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-827747	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	244220	-	AK295044 TSC_hg19_v1_chr7_+_20370337	357577	+	BC002630 NM_002214 M73780	357974	+	BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8	0.0	0.0	
chr1	183463797	183463965	reg1014096.p1	4.152	+	TSC_hg19_v1_chr1_+_183441650 D87437 AB085674	-22211	+	AK297207 TSC_hg19_v1_chr1_+_183441641 AK299178 AK056035 AK091477 AX747010 BC036381 AK307394 AK074297	-22251	+	TSC_hg19_v1_chr1_+_183441464 NM_001174061 NM_173156 NM_201568 NM_201569	-22391	+	BT007439 AB590135 DQ893650 DQ895812 CU674784 AF527950 TSC_hg19_v1_chr1_-_183559595 AK296672 AK312666 AK298713	95677	-	TSC_hg19_v1_chr1_-_183559669 BC001606 NM_000433 NM_001190789 NM_001190794	95832	-	M32011 TSC_hg19_v1_chr1_-_183560049 NM_001127651	96151	-	D87437|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB085674|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK297207|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK299178|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK056035|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK091477|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC036381|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK307394|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK074297|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001174061|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_173156|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_201568|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_201569|SMG7|9887|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)##BT007439|NCF2|4688|neutrophil cytosolic factor 2##DQ893650|NCF2|4688|neutrophil cytosolic factor 2##DQ895812|NCF2|4688|neutrophil cytosolic factor 2##AF527950|NCF2|4688|neutrophil cytosolic factor 2##AK296672|NCF2|4688|neutrophil cytosolic factor 2##AK312666|NCF2|4688|neutrophil cytosolic factor 2##AK298713|NCF2|4688|neutrophil cytosolic factor 2##BC001606|NCF2|4688|neutrophil cytosolic factor 2##NM_000433|NCF2|4688|neutrophil cytosolic factor 2##NM_001190789|NCF2|4688|neutrophil cytosolic factor 2##NM_001190794|NCF2|4688|neutrophil cytosolic factor 2##M32011|NCF2|4688|neutrophil cytosolic factor 2##NM_001127651|NCF2|4688|neutrophil cytosolic factor 2	1.966598	0.0	denovo_WM_7:16:0.804	denovo_WM_7:31:0.868
chr17	42308416	42308516	reg1017797.p1	4.152	+	BC050302 TSC_hg19_v1_chr17_+_42299409	-9121	+	AK292577 TSC_hg19_v1_chr17_-_42298971 AK292518	-9529	-	TSC_hg19_v1_chr17_-_42298282 BC042297 NM_001076683	-10187	-	BC101574 BC101570 M27819 NM_000342 X12609 TSC_hg19_v1_chr17_-_42345504	37003	-	AL133657 NM_001144825 NM_001144826 NM_006695 TSC_hg19_v1_chr17_+_42385950 AB209802 AK226045 BC006194 AK313669 BX537443 AF055026 CR456748 CU675291 U93871	77524	+	TSC_hg19_v1_chr17_-_42402172 BC096819 BC009330 AK026060 AL133584 BC001398 AK289357 AK295478 AK301139	93700	-	AK292577|UBTF|7343|upstream binding transcription factor, RNA polymerase I##AK292518|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC042297|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076683|UBTF|7343|upstream binding transcription factor, RNA polymerase I##BC101574|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##BC101570|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##M27819|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##NM_000342|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##X12609|SLC4A1|6521|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)##AL133657|RUNDC3A|10900|RUN domain containing 3A##NM_001144825|RUNDC3A|10900|RUN domain containing 3A##NM_001144826|RUNDC3A|10900|RUN domain containing 3A##NM_006695|RUNDC3A|10900|RUN domain containing 3A##AB209802|RUNDC3A|10900|RUN domain containing 3A##AK226045|RUNDC3A|10900|RUN domain containing 3A##BC006194|RUNDC3A|10900|RUN domain containing 3A##AK313669|RUNDC3A|10900|RUN domain containing 3A##BX537443|RUNDC3A|10900|RUN domain containing 3A##AF055026|RUNDC3A|10900|RUN domain containing 3A##CR456748|RUNDC3A|10900|RUN domain containing 3A##U93871|RUNDC3A|10900|RUN domain containing 3A##BC096819|SLC25A39|51629|solute carrier family 25, member 39##BC009330|SLC25A39|51629|solute carrier family 25, member 39##AK026060|SLC25A39|51629|solute carrier family 25, member 39##AL133584|SLC25A39|51629|solute carrier family 25, member 39##BC001398|SLC25A39|51629|solute carrier family 25, member 39##AK289357|SLC25A39|51629|solute carrier family 25, member 39##AK295478|SLC25A39|51629|solute carrier family 25, member 39##AK301139|SLC25A39|51629|solute carrier family 25, member 39	0.994893	0.0	
chr21	43288222	43288402	reg1014531.p1	4.152	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-101045	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-101090	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-408229	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	11186	-	BC062323 AL833323 NM_199050	58477	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	85771	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	0.0	0.0	
chr2	211054656	211054769	reg1011558.p1	4.152	+	TSC_hg19_v1_chr2_-_211036099 BC126155 BC143914 BC032837 NM_152519 AK308432	-18662	-	AK124963 TSC_hg19_v1_chr2_-_211035462	-19292	-	TSC_hg19_v1_chr2_-_211018294 AK074441 BC070141	-36371	-	BC064549 BC039063 AK313498 AK296161 NM_001608	35468	-	X05451 M20643 AK311892 BC005318 NM_079422	113614	-	AB527940 CR456869 TSC_hg19_v1_chr2_-_211179896 NM_079420 AK311942	125127	-	BC126155|C2orf67|151050|chromosome 2 open reading frame 67##BC143914|C2orf67|151050|chromosome 2 open reading frame 67##BC032837|C2orf67|151050|chromosome 2 open reading frame 67##NM_152519|C2orf67|151050|chromosome 2 open reading frame 67##AK308432|C2orf67|151050|chromosome 2 open reading frame 67##AK124963|C2orf67|151050|chromosome 2 open reading frame 67##AK074441|C2orf67|151050|chromosome 2 open reading frame 67##BC070141|C2orf67|151050|chromosome 2 open reading frame 67##BC064549|ACADL|33|acyl-CoA dehydrogenase, long chain##BC039063|ACADL|33|acyl-CoA dehydrogenase, long chain##AK313498|ACADL|33|acyl-CoA dehydrogenase, long chain##AK296161|ACADL|33|acyl-CoA dehydrogenase, long chain##NM_001608|ACADL|33|acyl-CoA dehydrogenase, long chain##X05451|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##M20643|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##AK311892|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##BC005318|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##NM_079422|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##CR456869|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##NM_079420|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast##AK311942|MYL1|4632|myosin, light chain 1, alkali; skeletal, fast	0.998542	0.0	denovo_WM_7:46:0.986
chr8	111038874	111039003	reg1009666.p1	4.152	+	BC028739 AK313469 AF167082 NM_014379 AK297393	-51972	-	NM_001099743 NM_001099744	-334919	-	AK290469 NM_001099745 NM_001099746	-345705	-	AB114605 NM_198124	3350443	-	BX648252 AY210419 TSC_hg19_v1_chr8_-_114449169 BC140003 AB114604 NM_052900 NM_198123	3410191	-	TSC_hg19_v1_chr8_-_116680208 AK304046	5641282	-	BC028739|KCNV1|27012|potassium channel, subfamily V, member 1##AK313469|KCNV1|27012|potassium channel, subfamily V, member 1##AF167082|KCNV1|27012|potassium channel, subfamily V, member 1##NM_014379|KCNV1|27012|potassium channel, subfamily V, member 1##AK297393|KCNV1|27012|potassium channel, subfamily V, member 1##NM_001099743|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099744|SYBU|55638|syntabulin (syntaxin-interacting)##AK290469|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099745|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099746|SYBU|55638|syntabulin (syntaxin-interacting)##AB114605|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198124|CSMD3|114788|CUB and Sushi multiple domains 3##BX648252|CSMD3|114788|CUB and Sushi multiple domains 3##AY210419|CSMD3|114788|CUB and Sushi multiple domains 3##BC140003|CSMD3|114788|CUB and Sushi multiple domains 3##AB114604|CSMD3|114788|CUB and Sushi multiple domains 3##NM_052900|CSMD3|114788|CUB and Sushi multiple domains 3##NM_198123|CSMD3|114788|CUB and Sushi multiple domains 3##AK304046|TRPS1|7227|trichorhinophalangeal syndrome I	0.0	0.030022	
chr1	101723387	101723513	reg1014523.p1	4.151	+	TSC_hg19_v1_chr1_+_101702575 AK312493 BC018650 M31210	-20880	+	NM_001400 TSC_hg19_v1_chr1_+_101702451 AK297005	-21069	+	TSC_hg19_v1_chr1_+_101491413 BX538249	-232017	+	CU692678 EU176509 AF397394 AF397395 AF397396 AF397397 TSC_hg19_v1_chr1_-_102462600 BC022531 AK095724	739037	-	NM_058170 TSC_hg19_v1_chr1_-_102462791	739340	-	AB208844 TSC_hg19_v1_chr1_-_103496798	1773333	-	AK312493|S1PR1|1901|sphingosine-1-phosphate receptor 1##BC018650|S1PR1|1901|sphingosine-1-phosphate receptor 1##M31210|S1PR1|1901|sphingosine-1-phosphate receptor 1##NM_001400|S1PR1|1901|sphingosine-1-phosphate receptor 1##AK297005|S1PR1|1901|sphingosine-1-phosphate receptor 1##EU176509|OLFM3|118427|olfactomedin 3##AF397394|OLFM3|118427|olfactomedin 3##AF397395|OLFM3|118427|olfactomedin 3##AF397396|OLFM3|118427|olfactomedin 3##AF397397|OLFM3|118427|olfactomedin 3##BC022531|OLFM3|118427|olfactomedin 3##AK095724|OLFM3|118427|olfactomedin 3##NM_058170|OLFM3|118427|olfactomedin 3##AB208844|COL11A1|1301|collagen, type XI, alpha 1	0.998487	0.0	denovo_WM_7:8:0.477	denovo_WM_7:9:0.477
chr15	85931198	85931378	reg1010713.p1	4.151	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	-7397	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	-264970	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-405962	+	AF127481 NM_144767	288979	+	TSC_hg19_v1_chr15_-_86338156 AL136796 BC028100 AK056663 AK315541 AK092231 AX747419 AY764034	406809	-	TSC_hg19_v1_chr15_-_86338178 NM_022480	406907	-	AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##BC075822|PDE8A|5151|phosphodiesterase 8A##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13##AL136796|KLHL25|64410|kelch-like 25 (Drosophila)##BC028100|KLHL25|64410|kelch-like 25 (Drosophila)##AK056663|KLHL25|64410|kelch-like 25 (Drosophila)##AK315541|KLHL25|64410|kelch-like 25 (Drosophila)##AK092231|KLHL25|64410|kelch-like 25 (Drosophila)##AY764034|KLHL25|64410|kelch-like 25 (Drosophila)##NM_022480|KLHL25|64410|kelch-like 25 (Drosophila)	0.98744	0.0	denovo_WM_7:-11:0.868
chr16	9821954	9822046	reg1012602.p1	4.151	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-636397	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-636460	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-764705	-	BC143273 U09002 NM_001134408	453833	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	454188	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	454677	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.0	0.039292	
chr17	7036151	7036297	reg1006477.p1	4.151	+	X55283 TSC_hg19_v1_chr17_-_7018083 BC017251 NM_001181 NM_001201352 NM_080912 NM_080913 AK310123 AK303787	-18054	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	-18235	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	-18631	-	BC032130 TSC_hg19_v1_chr17_-_7082568	46340	-	M10058 AB070933 TSC_hg19_v1_chr17_-_7082680 AK308375 AK124286 NM_001197216 NM_001671	46544	-	TSC_hg19_v1_chr17_-_7106561 BC040533	70370	-	X55283|ASGR2|433|asialoglycoprotein receptor 2##BC017251|ASGR2|433|asialoglycoprotein receptor 2##NM_001181|ASGR2|433|asialoglycoprotein receptor 2##NM_001201352|ASGR2|433|asialoglycoprotein receptor 2##NM_080912|ASGR2|433|asialoglycoprotein receptor 2##NM_080913|ASGR2|433|asialoglycoprotein receptor 2##AK310123|ASGR2|433|asialoglycoprotein receptor 2##AK303787|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##BC032130|ASGR1|432|asialoglycoprotein receptor 1##M10058|ASGR1|432|asialoglycoprotein receptor 1##AB070933|ASGR1|432|asialoglycoprotein receptor 1##AK308375|ASGR1|432|asialoglycoprotein receptor 1##AK124286|ASGR1|432|asialoglycoprotein receptor 1##NM_001197216|ASGR1|432|asialoglycoprotein receptor 1##NM_001671|ASGR1|432|asialoglycoprotein receptor 1##BC040533|DLG4|1742|discs, large homolog 4 (Drosophila)	0.0	0.0	
chr17	72982466	72982615	reg1014533.p2	4.151	+	TSC_hg19_v1_chr17_-_72968846 AK304081 BC035372 AK074401 AL137556 AK095565 BC032219 NM_030630	-13692	-	CU690082 AB527292 TSC_hg19_v1_chr17_-_72968758	-13786	-	BC143799 AB463989 NM_178233 AB593153	-50646	+	TSC_hg19_v1_chr17_+_72983726 AK294006 BC047534 NM_014603	1201	+	TSC_hg19_v1_chr17_+_73008770 AK222553 AK314138 BC015335 NM_001545 X81788 CU677269 DQ890655 DQ893834 BT007111	26237	+	TSC_hg19_v1_chr17_+_73028670 AK311278 AK307083	46148	+	AK304081|C17orf28|283987|chromosome 17 open reading frame 28##BC035372|C17orf28|283987|chromosome 17 open reading frame 28##AK074401|C17orf28|283987|chromosome 17 open reading frame 28##AL137556|C17orf28|283987|chromosome 17 open reading frame 28##AK095565|C17orf28|283987|chromosome 17 open reading frame 28##BC032219|C17orf28|283987|chromosome 17 open reading frame 28##NM_030630|C17orf28|283987|chromosome 17 open reading frame 28##BC143799|OTOP3|347741|otopetrin 3##NM_178233|OTOP3|347741|otopetrin 3##AB593153|OTOP3|347741|otopetrin 3##AK294006|CDR2L|30850|cerebellar degeneration-related protein 2-like##BC047534|CDR2L|30850|cerebellar degeneration-related protein 2-like##NM_014603|CDR2L|30850|cerebellar degeneration-related protein 2-like##AK222553|ICT1|3396|immature colon carcinoma transcript 1##AK314138|ICT1|3396|immature colon carcinoma transcript 1##BC015335|ICT1|3396|immature colon carcinoma transcript 1##NM_001545|ICT1|3396|immature colon carcinoma transcript 1##X81788|ICT1|3396|immature colon carcinoma transcript 1##DQ890655|ICT1|3396|immature colon carcinoma transcript 1##DQ893834|ICT1|3396|immature colon carcinoma transcript 1##BT007111|ICT1|3396|immature colon carcinoma transcript 1##AK307083|KCTD2|23510|potassium channel tetramerisation domain containing 2	0.998699	0.0	
chr4	87639038	87639213	reg1008432.p1	4.151	+	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-123652	+	NM_002753 U07620 BC051731 AK225974 TSC_hg19_v1_chr4_-_87374361	-264802	-	NM_138980 NM_138982	-357751	-	AJ583502 BC107051 BC107052 EF437223 NM_197965	131216	-	BC016746 BC063410 NM_144645	174435	-	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	217090	+	AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_002753|MAPK10|5602|mitogen-activated protein kinase 10##U07620|MAPK10|5602|mitogen-activated protein kinase 10##BC051731|MAPK10|5602|mitogen-activated protein kinase 10##AK225974|MAPK10|5602|mitogen-activated protein kinase 10##NM_138980|MAPK10|5602|mitogen-activated protein kinase 10##NM_138982|MAPK10|5602|mitogen-activated protein kinase 10##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1	0.0	0.0	
chr9	88313429	88313548	reg1011069.p1	4.151	+	U12140 TSC_hg19_v1_chr9_+_87285349	-1028156	+	TSC_hg19_v1_chr9_+_87284737 BC031835	-1028736	+	TSC_hg19_v1_chr9_+_87284681 AF410899 AF410900 AF410901	-1028792	+	AB028958 TSC_hg19_v1_chr9_-_88356870 AK001544 BC060815 AK295774 NM_015239	43383	-	AK292239 NM_024635 TSC_hg19_v1_chr9_+_88556070 AK025266 AK225237	242586	+	TSC_hg19_v1_chr9_+_88556124 BC117427 BC117429	242690	+	U12140|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##BC031835|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410899|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410900|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AF410901|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB028958|AGTPBP1|23287|ATP/GTP binding protein 1##AK001544|AGTPBP1|23287|ATP/GTP binding protein 1##BC060815|AGTPBP1|23287|ATP/GTP binding protein 1##AK295774|AGTPBP1|23287|ATP/GTP binding protein 1##NM_015239|AGTPBP1|23287|ATP/GTP binding protein 1##AK292239|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##NM_024635|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK025266|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##AK225237|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117427|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit##BC117429|NAA35|60560|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	0.0	0.887571	CTCF.p2:-65:0.888
chr1	2166397	2166527	reg1013157.p2	4.150	+	NM_003036 X15218 TSC_hg19_v1_chr1_+_2160159	-6293	+	AK127994 NM_001146310	-27291	-	TSC_hg19_v1_chr1_-_2126212 BC041041 AF469129 BC066360 AK055593 BC103992 NM_182533	-40283	-	TSC_hg19_v1_chr1_-_2322994 AK024003 NM_024848	156530	-	TSC_hg19_v1_chr1_-_2322997 AK299217 AK310323 BC021704	156608	-	TSC_hg19_v1_chr1_+_2323265 NM_007033 AF157324	156773	+	NM_003036|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##X15218|SKI|6497|v-ski sarcoma viral oncogene homolog (avian)##AK127994|C1orf86|199990|chromosome 1 open reading frame 86##NM_001146310|C1orf86|199990|chromosome 1 open reading frame 86##BC041041|C1orf86|199990|chromosome 1 open reading frame 86##AF469129|C1orf86|199990|chromosome 1 open reading frame 86##BC066360|C1orf86|199990|chromosome 1 open reading frame 86##AK055593|C1orf86|199990|chromosome 1 open reading frame 86##BC103992|C1orf86|199990|chromosome 1 open reading frame 86##NM_182533|C1orf86|199990|chromosome 1 open reading frame 86##AK024003|MORN1|79906|MORN repeat containing 1##NM_024848|MORN1|79906|MORN repeat containing 1##AK299217|MORN1|79906|MORN repeat containing 1##AK310323|MORN1|79906|MORN repeat containing 1##BC021704|MORN1|79906|MORN repeat containing 1##NM_007033|RER1|11079|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)##AF157324|RER1|11079|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	1.298731	0.0	denovo_WM_7:14:0.208	denovo_WM_7:30:0.975
chr1	22124519	22124617	reg1015679.p1	4.150	+	TSC_hg19_v1_chr1_-_22109701 AK026930 NM_001032730 NM_032236	-14869	-	TSC_hg19_v1_chr1_-_22109643 BC103724 BC067261	-14934	-	CU679968 AB384973 AK315005 BC104896 BC143343 BC143349 BC143354 TSC_hg19_v1_chr1_-_22109586 AK074247 AF502942 BC011576	-15043	-	AK127275 NM_001013693 BC146860	14238	+	TSC_hg19_v1_chr1_-_22263804 X62515 NM_005529 M85289	139198	-	NM_007352 AK092382 AK308518 AX747509 BC005216 M18692 AK315798 AK308510 M16630	178911	+	NM_001032730|USP48|84196|ubiquitin specific peptidase 48##NM_032236|USP48|84196|ubiquitin specific peptidase 48##BC103724|USP48|84196|ubiquitin specific peptidase 48##BC067261|USP48|84196|ubiquitin specific peptidase 48##AK315005|USP48|84196|ubiquitin specific peptidase 48##BC104896|USP48|84196|ubiquitin specific peptidase 48##BC143343|USP48|84196|ubiquitin specific peptidase 48##BC143349|USP48|84196|ubiquitin specific peptidase 48##BC143354|USP48|84196|ubiquitin specific peptidase 48##AK074247|USP48|84196|ubiquitin specific peptidase 48##AF502942|USP48|84196|ubiquitin specific peptidase 48##BC011576|USP48|84196|ubiquitin specific peptidase 48##AK127275|LDLRAD2|401944|low density lipoprotein receptor class A domain containing 2##NM_001013693|LDLRAD2|401944|low density lipoprotein receptor class A domain containing 2##BC146860|LDLRAD2|401944|low density lipoprotein receptor class A domain containing 2##X62515|HSPG2|3339|heparan sulfate proteoglycan 2##NM_005529|HSPG2|3339|heparan sulfate proteoglycan 2##M85289|HSPG2|3339|heparan sulfate proteoglycan 2##NM_007352|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK092382|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK308518|CELA3A|10136|chymotrypsin-like elastase family, member 3A##BC005216|CELA3B|23436|chymotrypsin-like elastase family, member 3B##M18692|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK315798|CELA3B|23436|chymotrypsin-like elastase family, member 3B##AK308510|CELA3A|10136|chymotrypsin-like elastase family, member 3A##M16630|CELA3B|23436|chymotrypsin-like elastase family, member 3B	0.99372	0.0	denovo_WM_7:19:0.780
chr14	103175096	103175220	reg1011702.p2	4.150	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-115997	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-116160	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-199044	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	68661	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	68742	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	213840	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.0	0.0	
chr3	105976028	105976165	reg1015844.p1	4.150	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-388289	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-555042	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-890274	+	TSC_hg19_v1_chr3_-_106959482 BC036229	983383	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	983496	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1120214	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.996747	0.0	denovo_WM_7:-67:0.449	denovo_WM_7:-68:0.449
chr6	34275926	34276016	reg1011713.p1	4.150	+	TSC_hg19_v1_chr6_-_34216832 BC009526 NM_001008703 NM_001008704 NM_178508	-59108	-	BC047919 TSC_hg19_v1_chr6_-_34216784 BC023627 AK290164	-59178	-	AK311680 TSC_hg19_v1_chr6_+_34216344	-59621	+	TSC_hg19_v1_chr6_-_34360182 AB463951 BT019984 BT019985 DQ893118 DQ896391 AF062529 AF062530	84230	-	TSC_hg19_v1_chr6_-_34360360 AK313440	84364	-	TSC_hg19_v1_chr6_-_34360425 BC007727	84449	-	BC009526|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008703|C6orf1|221491|chromosome 6 open reading frame 1##NM_001008704|C6orf1|221491|chromosome 6 open reading frame 1##NM_178508|C6orf1|221491|chromosome 6 open reading frame 1##BC047919|C6orf1|221491|chromosome 6 open reading frame 1##BC023627|C6orf1|221491|chromosome 6 open reading frame 1##AK290164|C6orf1|221491|chromosome 6 open reading frame 1##BT019984|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BT019985|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ893118|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##DQ896391|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062529|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AF062530|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AK313440|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BC007727|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3	2.988702	0.0	denovo_WM_7:-31:0.336	denovo_WM_7:-32:0.240	denovo_WM_7:-48:0.206	denovo_WM_7:-49:0.203	denovo_WM_7:-65:0.262	denovo_WM_7:-66:0.361
chr8	74086665	74086771	reg1006940.p2	4.150	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	-81276	-	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	-165606	+	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	-637075	+	BC150551 BC150552 NM_001243237	85018	-	CR456773 L16558 AB529035 BC071671 BC071895 BC087837 BC071894 BC001476 BC006095 X57959 AB055763 AK225246 AK225254 AK291119 AK313365 X52967 BC009599 NM_000971	119139	-	TSC_hg19_v1_chr8_+_74206836 NM_172037	120091	+	AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##BC150551|LOC100130301|100130301|uncharacterized LOC100130301##BC150552|LOC100130301|100130301|uncharacterized LOC100130301##NM_001243237|LOC100130301|100130301|uncharacterized LOC100130301##CR456773|RPL7|6129|ribosomal protein L7##L16558|RPL7|6129|ribosomal protein L7##BC071671|RPL7|6129|ribosomal protein L7##BC071895|RPL7|6129|ribosomal protein L7##BC087837|RPL7|6129|ribosomal protein L7##BC071894|RPL7|6129|ribosomal protein L7##BC006095|RPL7|6129|ribosomal protein L7##X57959|RPL7|6129|ribosomal protein L7##AK225246|RPL7|6129|ribosomal protein L7##AK225254|RPL7|6129|ribosomal protein L7##AK291119|RPL7|6129|ribosomal protein L7##AK313365|RPL7|6129|ribosomal protein L7##X52967|RPL7|6129|ribosomal protein L7##BC009599|RPL7|6129|ribosomal protein L7##NM_000971|RPL7|6129|ribosomal protein L7##NM_172037|RDH10|157506|retinol dehydrogenase 10 (all-trans)	0.0	0.987696	CTCF.p2:18:0.988
chr10	88648551	88648707	reg1003610.p1	4.149	+	TSC_hg19_v1_chr10_+_88516526 NM_004329 BC028383 AK291764 Z22535	-132142	+	AK304760 TSC_hg19_v1_chr10_+_88428267 AK300692 AK297871 NM_001080116 AJ133766 BC010929 NM_001080114 NM_001080115 NM_001171611 NM_007078 AB014513 AF276807 AF276808 AF276809 AJ133767 AJ133768	-220274	+	TSC_hg19_v1_chr10_+_88428170 NM_001171610	-220443	+	TSC_hg19_v1_chr10_-_88717330 BC072456 AK304727 AK023527 AK293822 BC094744 BC064415 AK308401 NM_024756	68742	-	NM_003087 AK223367 AK311652 BC014098 AK312141 AF017256 AF411524 EU019993 AF010126 DQ892334 DQ892505 DQ895719 EU176715 AB464279 CR541788 CR541790	69741	+	NM_006829 TSC_hg19_v1_chr10_+_88728238 AK304688 AK312031 BC004471 D45370	79599	+	NM_004329|BMPR1A|657|bone morphogenetic protein receptor, type IA##BC028383|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK291764|BMPR1A|657|bone morphogenetic protein receptor, type IA##Z22535|BMPR1A|657|bone morphogenetic protein receptor, type IA##AK304760|LDB3|11155|LIM domain binding 3##AK300692|LDB3|11155|LIM domain binding 3##AK297871|LDB3|11155|LIM domain binding 3##NM_001080116|LDB3|11155|LIM domain binding 3##AJ133766|LDB3|11155|LIM domain binding 3##BC010929|LDB3|11155|LIM domain binding 3##NM_001080114|LDB3|11155|LIM domain binding 3##NM_001080115|LDB3|11155|LIM domain binding 3##NM_001171611|LDB3|11155|LIM domain binding 3##NM_007078|LDB3|11155|LIM domain binding 3##AB014513|LDB3|11155|LIM domain binding 3##AF276807|LDB3|11155|LIM domain binding 3##AF276808|LDB3|11155|LIM domain binding 3##AF276809|LDB3|11155|LIM domain binding 3##AJ133767|LDB3|11155|LIM domain binding 3##AJ133768|LDB3|11155|LIM domain binding 3##NM_001171610|LDB3|11155|LIM domain binding 3##BC072456|MMRN2|79812|multimerin 2##AK304727|MMRN2|79812|multimerin 2##AK023527|MMRN2|79812|multimerin 2##AK293822|MMRN2|79812|multimerin 2##BC094744|MMRN2|79812|multimerin 2##BC064415|MMRN2|79812|multimerin 2##AK308401|MMRN2|79812|multimerin 2##NM_024756|MMRN2|79812|multimerin 2##NM_003087|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK223367|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##BC014098|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AK312141|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF017256|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF411524|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU019993|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##AF010126|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892334|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ892505|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##DQ895719|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##EU176715|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541788|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##CR541790|SNCG|6623|synuclein, gamma (breast cancer-specific protein 1)##NM_006829|C10orf116|10974|chromosome 10 open reading frame 116##AK312031|C10orf116|10974|chromosome 10 open reading frame 116##BC004471|C10orf116|10974|chromosome 10 open reading frame 116##D45370|C10orf116|10974|chromosome 10 open reading frame 116	0.999297	0.0	
chr4	151932721	151932868	reg1011941.p1	4.149	+	TSC_hg19_v1_chr4_-_151773972 BC172218	-158800	-	TSC_hg19_v1_chr4_-_151770612 AB208838	-162145	-	NM_006439	-429718	+	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	3624	-	AF216648 NM_006726	3854	-	TSC_hg19_v1_chr4_-_151936880 AK098039	4096	-	AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	1.063139	0.0	
chr6_cox_hap2	2318335	2318431	reg1010877.p1	4.149	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.795756	0.0	denovo_WM_7:49:0.404	denovo_WM_7:64:0.517
chr7	154658614	154658747	reg1009797.p1	4.149	+	AK309760 AK308993 AK293582 NM_001936 TSC_hg19_v1_chr7_+_154002377 M96860 AK294483 AB384749	-656295	+	TSC_hg19_v1_chr7_+_153749746 M96859 NM_130797	-908922	+	TSC_hg19_v1_chr7_+_153584383 BX647966 NM_001039350	-1074280	+	TSC_hg19_v1_chr7_+_154720213 BC033053 AK311721 AK056609 BC050402	61517	+	TSC_hg19_v1_chr7_-_154794664 AK293744 AK123600 NM_007349 AK307417	135990	-	TSC_hg19_v1_chr7_+_154795161 BC035068 BC048116 AL713756	136531	+	AK309760|DPP6|1804|dipeptidyl-peptidase 6##AK308993|DPP6|1804|dipeptidyl-peptidase 6##AK293582|DPP6|1804|dipeptidyl-peptidase 6##NM_001936|DPP6|1804|dipeptidyl-peptidase 6##M96860|DPP6|1804|dipeptidyl-peptidase 6##AK294483|DPP6|1804|dipeptidyl-peptidase 6##M96859|DPP6|1804|dipeptidyl-peptidase 6##NM_130797|DPP6|1804|dipeptidyl-peptidase 6##BX647966|DPP6|1804|dipeptidyl-peptidase 6##NM_001039350|DPP6|1804|dipeptidyl-peptidase 6##BC033053|LOC100132707|100132707|uncharacterized LOC100132707##AK311721|LOC100132707|100132707|uncharacterized LOC100132707##AK056609|LOC100132707|100132707|uncharacterized LOC100132707##BC050402|LOC100132707|100132707|uncharacterized LOC100132707##AK293744|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##AK123600|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##NM_007349|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##AK307417|PAXIP1|22976|PAX interacting (with transcription-activation domain) protein 1##BC035068|LOC202781|202781|uncharacterized LOC202781##BC048116|LOC202781|202781|uncharacterized LOC202781##AL713756|LOC202781|202781|uncharacterized LOC202781	0.997158	0.0	denovo_WM_7:20:0.793
chr8	125654207	125654311	reg1008291.p1	4.149	+	AF116674 TSC_hg19_v1_chr8_-_125580771	-73498	-	TSC_hg19_v1_chr8_-_125579395 AK126989	-74853	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	-102875	+	TSC_hg19_v1_chr8_-_125716430 U50573	62173	-	EF560715 TSC_hg19_v1_chr8_-_125740463 AK027015	86186	-	TSC_hg19_v1_chr8_-_125740689 AF086645 NM_014751	86464	-	AF116674|MTSS1|9788|metastasis suppressor 1##AK126989|MTSS1|9788|metastasis suppressor 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##U50573|MTSS1|9788|metastasis suppressor 1##EF560715|MTSS1|9788|metastasis suppressor 1##AK027015|MTSS1|9788|metastasis suppressor 1##AF086645|MTSS1|9788|metastasis suppressor 1##NM_014751|MTSS1|9788|metastasis suppressor 1	0.0	0.0	
chr12	6650152	6650281	reg1019360.p2	4.148	+	M36164 TSC_hg19_v1_chr12_+_6647482	-2799	+	TSC_hg19_v1_chr12_+_6643982 M17851 AY633612 BC023632 DQ891557 DQ894744 AB463693 CU679249 J02642 BT006893 CR407671	-6234	+	TSC_hg19_v1_chr12_+_6643683 AF261085 NM_002046 AK308198 AK299448 BC009081 BC013310 M33197 BC025925 BC029618 X53778 AB062273 AY007133 BC004109 BC083511 BC029340 BC001601 BC020308 BC026907	-6554	+	TSC_hg19_v1_chr12_-_6665250 BC001790 BC010431 BC023664 BC110387 NM_001039670 NM_001193457 NM_080730	15042	-	TSC_hg19_v1_chr12_-_6677453 BC000656 BC065257 AK129852 BC106072 BC082985 BC128183 BC128184 AK056208 AK307582 NM_001033714 NM_006170	27250	-	CR936680 EU446505 TSC_hg19_v1_chr12_-_6715604	65352	-	M36164|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M17851|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY633612|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC023632|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ891557|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##DQ894744|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##J02642|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BT006893|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##CR407671|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AF261085|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##NM_002046|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AK308198|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AK299448|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC009081|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC013310|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##M33197|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC025925|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC029618|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##X53778|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AB062273|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##AY007133|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC004109|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC083511|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC029340|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC001601|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC020308|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC026907|GAPDH|2597|glyceraldehyde-3-phosphate dehydrogenase##BC001790|IFFO1|25900|intermediate filament family orphan 1##BC010431|IFFO1|25900|intermediate filament family orphan 1##BC023664|IFFO1|25900|intermediate filament family orphan 1##BC110387|IFFO1|25900|intermediate filament family orphan 1##NM_001039670|IFFO1|25900|intermediate filament family orphan 1##NM_001193457|IFFO1|25900|intermediate filament family orphan 1##NM_080730|IFFO1|25900|intermediate filament family orphan 1##BC000656|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC065257|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK129852|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC106072|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC082985|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC128183|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##BC128184|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK056208|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##AK307582|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##NM_001033714|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##NM_006170|NOP2|4839|NOP2 nucleolar protein homolog (yeast)##CR936680|CHD4|1108|chromodomain helicase DNA binding protein 4##EU446505|CHD4|1108|chromodomain helicase DNA binding protein 4	0.996476	0.0	denovo_WM_7:-20:0.449	denovo_WM_7:-21:0.449
chr12	69920988	69921168	reg1012395.p1	4.148	+	TSC_hg19_v1_chr12_+_69864170 NM_001042555 NM_006654 BC021562 AK312477	-56936	+	TSC_hg19_v1_chr12_+_69753535 NM_006530 U61384 AJ245746 BC000994 AK001413 AB464359 EU446926	-167472	+	TSC_hg19_v1_chr12_+_69742163 AK310930 AK311779 J03801 FJ795023 BC004147 M21119 M19045 AB463851 DQ892271 DQ895472 U25677	-178869	+	TSC_hg19_v1_chr12_+_69979238 NM_006431 AK290767 BC113514 BC113516 AK297685 AF026166	58146	+	AF026293 TSC_hg19_v1_chr12_+_69979275	58199	+	AK294307 AK316408 NM_001198842 AK316397 AK302157	58471	+	NM_001042555|FRS2|10818|fibroblast growth factor receptor substrate 2##NM_006654|FRS2|10818|fibroblast growth factor receptor substrate 2##BC021562|FRS2|10818|fibroblast growth factor receptor substrate 2##AK312477|FRS2|10818|fibroblast growth factor receptor substrate 2##NM_006530|YEATS4|8089|YEATS domain containing 4##U61384|YEATS4|8089|YEATS domain containing 4##AJ245746|YEATS4|8089|YEATS domain containing 4##BC000994|YEATS4|8089|YEATS domain containing 4##AK001413|YEATS4|8089|YEATS domain containing 4##EU446926|YEATS4|8089|YEATS domain containing 4##AK311779|LYZ|4069|lysozyme##J03801|LYZ|4069|lysozyme##FJ795023|LYZ|4069|lysozyme##BC004147|LYZ|4069|lysozyme##M21119|LYZ|4069|lysozyme##M19045|LYZ|4069|lysozyme##DQ892271|LYZ|4069|lysozyme##DQ895472|LYZ|4069|lysozyme##U25677|LYZ|4069|lysozyme##NM_006431|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK290767|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##BC113514|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##BC113516|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK297685|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AF026166|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AF026293|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK294307|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK316408|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##NM_001198842|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK316397|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)##AK302157|CCT2|10576|chaperonin containing TCP1, subunit 2 (beta)	1.989355	0.0	denovo_WM_7:34:0.745
chr19	7194589	7194730	reg1011300.p1	4.148	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-95108	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-124944	+	AK315405 NM_001044387 NM_001044388 NM_024341	-125197	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	99301	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	265348	+	TSC_hg19_v1_chr19_+_7460061 AB011093	265418	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.997286	0.0	
chr21	46345392	46345523	reg1004713.p2	4.148	+	AB208909 TSC_hg19_v1_chr21_-_46340890 NM_000211	-4538	-	AK222505 TSC_hg19_v1_chr21_-_46340824	-4626	-	TSC_hg19_v1_chr21_-_46340815 L78790 AK303488 M15395 AK128344	-4660	-	TSC_hg19_v1_chr21_-_46348634 AK095992 NM_001127491	3235	-	BC128244 BC128245 AF380178 AY040088 TSC_hg19_v1_chr21_-_46359834 AK127059	14306	-	TSC_hg19_v1_chr21_+_46359920 AF391113 AF391114 BC009341 NM_058190	14468	+	AB208909|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_000211|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK222505|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##L78790|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK303488|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##M15395|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK128344|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##AK095992|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##NM_001127491|ITGB2|3689|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)##BC128244|C21orf67|84536|chromosome 21 open reading frame 67##BC128245|C21orf67|84536|chromosome 21 open reading frame 67##AF380178|C21orf67|84536|chromosome 21 open reading frame 67##AY040088|C21orf67|84536|chromosome 21 open reading frame 67##AF391113|FAM207A|85395|family with sequence similarity 207, member A##AF391114|FAM207A|85395|family with sequence similarity 207, member A##BC009341|FAM207A|85395|family with sequence similarity 207, member A##NM_058190|FAM207A|85395|family with sequence similarity 207, member A	0.948833	0.0	denovo_WM_7:-45:0.255	denovo_WM_7:-47:0.406
chr5	149838258	149838438	reg1010123.p1	4.148	+	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	-9057	-	TSC_hg19_v1_chr5_-_149829249 BC020515	-9104	-	TSC_hg19_v1_chr5_-_149792474 NM_001025158 NM_001025159 NM_004355	-45898	-	TSC_hg19_v1_chr5_+_149865341 AB209107	27091	+	AK292448 NM_001543 U36600	49365	+	TSC_hg19_v1_chr5_+_149980641 AL831818 NM_001166208	142294	+	BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##BC020515|RPS14|6208|ribosomal protein S14##NM_001025158|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_001025159|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##NM_004355|CD74|972|CD74 molecule, major histocompatibility complex, class II invariant chain##AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AK292448|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##NM_001543|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##U36600|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AL831818|SYNPO|11346|synaptopodin##NM_001166208|SYNPO|11346|synaptopodin	0.976022	0.0	denovo_WM_7:-105:0.842
chr8	133970995	133971109	reg1013703.p1	4.148	+	AK303666 NM_003235 X05615 BC140933 U93033 X02154	-91829	+	TSC_hg19_v1_chr8_+_133787633 AK290506 BC002822 BC015211	-183410	+	TSC_hg19_v1_chr8_+_133787606 NM_016018 NM_032205 NM_198513	-183469	+	AB464247 BT019994 CR536537 EU831422 EU831515 D89077 BC007042 NM_006748	101451	-	TSC_hg19_v1_chr8_-_134087203 AK311010 AK310092	116143	-	AJ238591 TSC_hg19_v1_chr8_-_134087273 AK310108 AK310115	116220	-	AK303666|TG|7038|thyroglobulin##NM_003235|TG|7038|thyroglobulin##X05615|TG|7038|thyroglobulin##BC140933|TG|7038|thyroglobulin##U93033|TG|7038|thyroglobulin##X02154|TG|7038|thyroglobulin##AK290506|PHF20L1|51105|PHD finger protein 20-like 1##BC002822|PHF20L1|51105|PHD finger protein 20-like 1##BC015211|PHF20L1|51105|PHD finger protein 20-like 1##NM_016018|PHF20L1|51105|PHD finger protein 20-like 1##NM_032205|PHF20L1|51105|PHD finger protein 20-like 1##NM_198513|PHF20L1|51105|PHD finger protein 20-like 1##BT019994|SLA|6503|Src-like-adaptor##CR536537|SLA|6503|Src-like-adaptor##EU831422|SLA|6503|Src-like-adaptor##EU831515|SLA|6503|Src-like-adaptor##D89077|SLA|6503|Src-like-adaptor##BC007042|SLA|6503|Src-like-adaptor##NM_006748|SLA|6503|Src-like-adaptor##AK311010|SLA|6503|Src-like-adaptor##AK310092|SLA|6503|Src-like-adaptor##AJ238591|SLA|6503|Src-like-adaptor##AK310108|SLA|6503|Src-like-adaptor##AK310115|SLA|6503|Src-like-adaptor	0.018144	0.0	
chr10	67629913	67630044	reg1015177.p1	4.147	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-2348737	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-2348816	+	TSC_hg19_v1_chr10_+_65281112 BC068557 NM_001001330	-2348863	+	NM_178011 BX640611 AY358315 BC111492	1055837	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	1795418	-	AF091606 AK313882 NM_013266	1825959	-	BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##BC068557|REEP3|221035|receptor accessory protein 3##NM_001001330|REEP3|221035|receptor accessory protein 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	0.987346	0.0	denovo_WM_7:0:0.951
chr11	3750908	3751035	reg1012240.p1	4.147	+	AB528800 AJ278118 AJ295237 BC136250 BC143303 AF199235 NM_020402	-58393	-	BC017828 BC069102 NM_004314 S74683 BC111729	-84601	+	NM_053017 NM_001079536 Y16835	-87457	-	TSC_hg19_v1_chr11_-_3803317 EF071958	52357	-	TSC_hg19_v1_chr11_-_3818730 AF071076 AF071077	67748	-	TSC_hg19_v1_chr11_-_3818785 AF231130 U41815 AK292882 BC041136 AB038155 AB040538 AK301512	67789	-	AJ278118|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AJ295237|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC136250|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC143303|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##AF199235|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##NM_020402|CHRNA10|57053|cholinergic receptor, nicotinic, alpha 10##BC017828|ART1|417|ADP-ribosyltransferase 1##BC069102|ART1|417|ADP-ribosyltransferase 1##NM_004314|ART1|417|ADP-ribosyltransferase 1##S74683|ART1|417|ADP-ribosyltransferase 1##BC111729|ART1|417|ADP-ribosyltransferase 1##NM_053017|ART5|116969|ADP-ribosyltransferase 5##NM_001079536|ART5|116969|ADP-ribosyltransferase 5##Y16835|ART5|116969|ADP-ribosyltransferase 5##EF071958|NUP98|4928|nucleoporin 98kDa##AF071076|NUP98|4928|nucleoporin 98kDa##AF071077|NUP98|4928|nucleoporin 98kDa##AF231130|NUP98|4928|nucleoporin 98kDa##U41815|NUP98|4928|nucleoporin 98kDa##AK292882|NUP98|4928|nucleoporin 98kDa##BC041136|NUP98|4928|nucleoporin 98kDa##AB040538|NUP98|4928|nucleoporin 98kDa##AK301512|NUP98|4928|nucleoporin 98kDa	1.011338	0.0	
chr16	53948087	53948211	reg1011877.p2	4.147	+	TSC_hg19_v1_chr16_+_53738067 AK096554 AB051539 AK295196	-210081	+	NM_001080432	-210275	+	TSC_hg19_v1_chr16_-_53737760 BC136433 AK096333 AK308390 BC017977 CR749645 AK307929 EF565106 NM_001127897 NM_015272 AK304790	-210392	-	BC034328 TSC_hg19_v1_chr16_-_54319025	370815	-	TSC_hg19_v1_chr16_+_54319531 AK309303	371372	+	DQ892008 EU176666 TSC_hg19_v1_chr16_-_54320043	371857	-	AK096554|FTO|79068|fat mass and obesity associated##AB051539|FTO|79068|fat mass and obesity associated##AK295196|FTO|79068|fat mass and obesity associated##NM_001080432|FTO|79068|fat mass and obesity associated##BC136433|RPGRIP1L|23322|RPGRIP1-like##AK096333|RPGRIP1L|23322|RPGRIP1-like##AK308390|RPGRIP1L|23322|RPGRIP1-like##BC017977|RPGRIP1L|23322|RPGRIP1-like##CR749645|RPGRIP1L|23322|RPGRIP1-like##AK307929|RPGRIP1L|23322|RPGRIP1-like##EF565106|RPGRIP1L|23322|RPGRIP1-like##NM_001127897|RPGRIP1L|23322|RPGRIP1-like##NM_015272|RPGRIP1L|23322|RPGRIP1-like##AK304790|RPGRIP1L|23322|RPGRIP1-like##BC034328|IRX3|79191|iroquois homeobox 3##DQ892008|IRX3|79191|iroquois homeobox 3##EU176666|IRX3|79191|iroquois homeobox 3	1.011351	0.0	denovo_WM_7:26:0.876
chr20	32364901	32365081	reg1014776.p1	4.147	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-45195	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-56977	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-90794	-	TSC_hg19_v1_chr20_+_32399127 NM_176812	34095	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	34229	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	216488	+	BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.995786	0.0	
chr22	18457544	18457623	reg1006345.p1	4.147	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-200249	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-200360	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-200376	-	TSC_hg19_v1_chr22_-_18484268 AK127487	26645	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	49678	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	103105	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.965867	0.0	denovo_WM_7:-75:0.966
chr7	77526542	77526660	reg1012716.p1	4.147	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	-57092	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	-98391	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	-98460	+	AB014605 BC150277 AK297353 AF038563 NM_012301	1556278	-	TSC_hg19_v1_chr7_+_79083303 AK311103	1556556	+	TSC_hg19_v1_chr7_+_79764166 NM_002069 BC026326 AL049933 AK292953	2237538	+	BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##AB014605|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##BC150277|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK297353|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AF038563|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##NM_012301|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK311103|MAGI2-AS3|100505881|MAGI2 antisense RNA 3 (non-protein coding)##NM_002069|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##BC026326|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AL049933|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AK292953|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	0.993768	0.0	denovo_WM_7:17:0.248	denovo_WM_7:18:0.248	denovo_WM_7:19:0.248	denovo_WM_7:20:0.248
chr8	29732997	29733078	reg1016884.p1	4.147	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-524967	-	AL137704 NM_057158	-526716	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-612423	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	207437	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	207535	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	219906	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	1.987523	0.0	denovo_WM_7:77:0.277	denovo_WM_7:78:0.232	denovo_WM_7:96:0.224	denovo_WM_7:97:0.268
chr9	99635218	99635333	reg1011109.p1	4.147	+	BC137073 AK131468 NM_001001662	-18889	-	AB023189 NM_014930 TSC_hg19_v1_chr9_-_99540352 BC036676 BC068587 BC058022 AK292600	-94922	-	TSC_hg19_v1_chr9_-_99417600 BC136501 BC136503 NM_153698	-217665	-	NM_001045477 NM_001170741	56010	+	TSC_hg19_v1_chr9_-_99775872 BC005058	140625	-	AF070448 BC023504 Y14734 AB001928 AK310645 AK310740 BC110512 AY358641 NM_001333	166203	-	BC137073|ZNF782|158431|zinc finger protein 782##AK131468|ZNF782|158431|zinc finger protein 782##NM_001001662|ZNF782|158431|zinc finger protein 782##AB023189|ZNF510|22869|zinc finger protein 510##NM_014930|ZNF510|22869|zinc finger protein 510##BC036676|ZNF510|22869|zinc finger protein 510##BC068587|ZNF510|22869|zinc finger protein 510##BC058022|ZNF510|22869|zinc finger protein 510##AK292600|ZNF510|22869|zinc finger protein 510##BC136501|C9orf21|195827|chromosome 9 open reading frame 21##BC136503|C9orf21|195827|chromosome 9 open reading frame 21##NM_153698|C9orf21|195827|chromosome 9 open reading frame 21##NM_001045477|FAM22G|441457|family with sequence similarity 22, member G##NM_001170741|FAM22G|441457|family with sequence similarity 22, member G##BC005058|HIATL2|84278|hippocampus abundant transcript-like 2##AF070448|CTSL2|1515|cathepsin L2##BC023504|CTSL2|1515|cathepsin L2##Y14734|CTSL2|1515|cathepsin L2##AB001928|CTSL2|1515|cathepsin L2##AK310645|CTSL2|1515|cathepsin L2##AK310740|CTSL2|1515|cathepsin L2##BC110512|CTSL2|1515|cathepsin L2##AY358641|CTSL2|1515|cathepsin L2##NM_001333|CTSL2|1515|cathepsin L2	0.867311	0.0	denovo_WM_7:91:0.393	denovo_WM_7:92:0.439
chr11	125319366	125319436	reg1014719.p1	4.146	+	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	-284775	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	-284823	+	TSC_hg19_v1_chr11_-_124981479 BC132716 BC132718 BC144270 BC144276 BC144277	-337932	-	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	46740	-	TSC_hg19_v1_chr11_+_125439294 NM_001007277 NM_004879	119894	+	TSC_hg19_v1_chr11_+_125439332 AB209820	119924	+	BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##BC132716|TMEM218|219854|transmembrane protein 218##BC132718|TMEM218|219854|transmembrane protein 218##BC144270|TMEM218|219854|transmembrane protein 218##BC144276|TMEM218|219854|transmembrane protein 218##BC144277|TMEM218|219854|transmembrane protein 218##U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_001007277|EI24|9538|etoposide induced 2.4 mRNA##NM_004879|EI24|9538|etoposide induced 2.4 mRNA##AB209820|EI24|9538|etoposide induced 2.4 mRNA	2.091828	0.0	denovo_WM_7:-63:0.775	denovo_WM_7:-78:0.363	denovo_WM_7:-79:0.435
chr2	85105641	85105745	reg1014542.p1	4.146	+	TSC_hg19_v1_chr2_+_84743576 AK094676 NM_001370	-362116	+	NM_003849	-419108	-	AK296741 TSC_hg19_v1_chr2_-_84686396	-419298	-	TSC_hg19_v1_chr2_-_85108209 AK296608 AK309615	2514	-	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	2610	-	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	27102	+	AK094676|DNAH6|1768|dynein, axonemal, heavy chain 6##NM_001370|DNAH6|1768|dynein, axonemal, heavy chain 6##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296608|C2orf89|129293|chromosome 2 open reading frame 89##AK309615|C2orf89|129293|chromosome 2 open reading frame 89##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10	0.998149	0.0	denovo_WM_7:-32:0.951
chr11	9723938	9724118	reg1010998.p2	4.145	+	TSC_hg19_v1_chr11_+_9685669 AB014540 BC000134 CU674300 AF210818 AK304104	-38322	+	BC000616 TSC_hg19_v1_chr11_+_9685651 AF134894	-38377	+	TSC_hg19_v1_chr11_+_9685627 NM_015055	-38392	+	AK098060 TSC_hg19_v1_chr11_+_9779882	55834	+	TSC_hg19_v1_chr11_-_10315755 BC101466 AY234241 NM_030962	591738	-	TSC_hg19_v1_chr11_+_10326623 AK312893 BC015961 D14874 NM_001124	602601	+	AB014540|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##BC000134|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AF210818|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AK304104|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##BC000616|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AF134894|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##NM_015055|SWAP70|23075|SWAP switching B-cell complex 70kDa subunit##AK098060|LOC283104|283104|uncharacterized LOC283104##BC101466|SBF2|81846|SET binding factor 2##AY234241|SBF2|81846|SET binding factor 2##NM_030962|SBF2|81846|SET binding factor 2##AK312893|ADM|133|adrenomedullin##BC015961|ADM|133|adrenomedullin##D14874|ADM|133|adrenomedullin##NM_001124|ADM|133|adrenomedullin	0.980493	0.0	denovo_WM_7:-61:0.473
chr1	198125378	198125528	reg1006131.p1	4.145	+	TSC_hg19_v1_chr1_+_197886502 AY273889 NM_020204	-238946	+	AJ296272 NM_001014434 AJ277915	-243814	+	BC130608 BC130634 NM_001024594 HQ258066 BC038214	-253722	+	TSC_hg19_v1_chr1_+_198126162 NM_133494 AK313411	601	+	NM_133262 NM_133326	384621	-	NM_002838 NM_080921 NM_080923 AK308217 TSC_hg19_v1_chr1_+_198608169 AK310898	482720	+	AY273889|LHX9|56956|LIM homeobox 9##NM_020204|LHX9|56956|LIM homeobox 9##AJ296272|LHX9|56956|LIM homeobox 9##NM_001014434|LHX9|56956|LIM homeobox 9##AJ277915|LHX9|56956|LIM homeobox 9##BC130608|C1orf53|388722|chromosome 1 open reading frame 53##BC130634|C1orf53|388722|chromosome 1 open reading frame 53##NM_001024594|C1orf53|388722|chromosome 1 open reading frame 53##HQ258066|C1orf53|388722|chromosome 1 open reading frame 53##BC038214|C1orf53|388722|chromosome 1 open reading frame 53##NM_133494|NEK7|140609|NIMA (never in mitosis gene a)-related kinase 7##AK313411|NEK7|140609|NIMA (never in mitosis gene a)-related kinase 7##NM_133262|ATP6V1G3|127124|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3##NM_133326|ATP6V1G3|127124|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3##NM_002838|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080921|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##NM_080923|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK308217|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK310898|PTPRC|5788|protein tyrosine phosphatase, receptor type, C	0.0	0.0	
chr13	53028979	53029115	reg1017105.p1	4.145	+	TSC_hg19_v1_chr13_-_53024744 AF151903 BC050439 BC037279 AK289740 NM_016075	-4280	-	AK096289 NM_018676 NM_199263	-48419	-	AB044385 TSC_hg19_v1_chr13_-_52980275 BC063842 AK298974 AK315087 AY358149	-48769	-	NM_001098525 NM_018204 TSC_hg19_v1_chr13_+_53029573 AY062261 AY062262 AK022982 Y15758	506	+	EF560732 TSC_hg19_v1_chr13_+_53029614 BC105806 BC066920 BC130296 BC136332 EU832808 GQ129239 HQ258356	605	+	TSC_hg19_v1_chr13_+_53035247 AL136848	6246	+	AF151903|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##BC050439|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##BC037279|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##AK289740|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##NM_016075|VPS36|51028|vacuolar protein sorting 36 homolog (S. cerevisiae)##AK096289|THSD1|55901|thrombospondin, type I, domain containing 1##NM_018676|THSD1|55901|thrombospondin, type I, domain containing 1##NM_199263|THSD1|55901|thrombospondin, type I, domain containing 1##AB044385|THSD1|55901|thrombospondin, type I, domain containing 1##BC063842|THSD1|55901|thrombospondin, type I, domain containing 1##AK298974|THSD1|55901|thrombospondin, type I, domain containing 1##AK315087|THSD1|55901|thrombospondin, type I, domain containing 1##AY358149|THSD1|55901|thrombospondin, type I, domain containing 1##NM_001098525|CKAP2|26586|cytoskeleton associated protein 2##NM_018204|CKAP2|26586|cytoskeleton associated protein 2##AY062261|CKAP2|26586|cytoskeleton associated protein 2##AY062262|CKAP2|26586|cytoskeleton associated protein 2##AK022982|CKAP2|26586|cytoskeleton associated protein 2##Y15758|CKAP2|26586|cytoskeleton associated protein 2##EF560732|CKAP2|26586|cytoskeleton associated protein 2##BC105806|CKAP2|26586|cytoskeleton associated protein 2##BC066920|CKAP2|26586|cytoskeleton associated protein 2##BC130296|CKAP2|26586|cytoskeleton associated protein 2##BC136332|CKAP2|26586|cytoskeleton associated protein 2##EU832808|CKAP2|26586|cytoskeleton associated protein 2##GQ129239|CKAP2|26586|cytoskeleton associated protein 2##HQ258356|CKAP2|26586|cytoskeleton associated protein 2##AL136848|CKAP2|26586|cytoskeleton associated protein 2	0.015466	0.0	
chr15	37395405	37395471	reg1008322.p2	4.145	+	TSC_hg19_v1_chr15_-_37393466 BC050431 NM_001220482 NM_002399 BC001516 BC001844 BC007202 AK300247	-1996	-	TSC_hg19_v1_chr15_-_37392751 AK056216 NM_170674 NM_170675 NM_170676 NM_170677	-2882	-	TSC_hg19_v1_chr15_-_37392322 AK226072	-3107	-	BC029221 NM_152453	832018	+	TSC_hg19_v1_chr15_+_38544515 AK091222 AX746859 BC137480 BC137481	1148957	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	1149584	+	BC050431|MEIS2|4212|Meis homeobox 2##NM_001220482|MEIS2|4212|Meis homeobox 2##NM_002399|MEIS2|4212|Meis homeobox 2##BC001516|MEIS2|4212|Meis homeobox 2##BC001844|MEIS2|4212|Meis homeobox 2##BC007202|MEIS2|4212|Meis homeobox 2##AK300247|MEIS2|4212|Meis homeobox 2##AK056216|MEIS2|4212|Meis homeobox 2##NM_170674|MEIS2|4212|Meis homeobox 2##NM_170675|MEIS2|4212|Meis homeobox 2##NM_170676|MEIS2|4212|Meis homeobox 2##NM_170677|MEIS2|4212|Meis homeobox 2##AK226072|MEIS2|4212|Meis homeobox 2##BC029221|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_152453|TMCO5A|145942|transmembrane and coiled-coil domains 5A##AK091222|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137480|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137481|SPRED1|161742|sprouty-related, EVH1 domain containing 1##NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1	0.028884	0.0	
chr22	19419979	19420083	reg1013161.p1	4.145	+	TSC_hg19_v1_chr22_+_19419346 AK123768	-649	+	TSC_hg19_v1_chr22_-_19419257 NM_003325 X75296 X89887 BC032721	-784	-	TSC_hg19_v1_chr22_-_19419214 BC039835	-836	-	TSC_hg19_v1_chr22_+_19420067 BC009707 NM_003776 AF034091 AJ295637 CR456532 AB528186 CU013132 CU013420 AK057708	16	+	BC030758 CU013050 CU013338 TSC_hg19_v1_chr22_-_19435224 AK299950 AK095271 AK308642 CR456339 BC046204 BC062599 AK289809	15197	-	AK290073 NM_001166242 NM_173793	15709	-	AK123768|MRPL40|64976|mitochondrial ribosomal protein L40##NM_003325|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##X75296|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##X89887|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##BC032721|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##BC039835|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##BC009707|MRPL40|64976|mitochondrial ribosomal protein L40##NM_003776|MRPL40|64976|mitochondrial ribosomal protein L40##AF034091|MRPL40|64976|mitochondrial ribosomal protein L40##AJ295637|MRPL40|64976|mitochondrial ribosomal protein L40##CR456532|MRPL40|64976|mitochondrial ribosomal protein L40##CU013132|MRPL40|64976|mitochondrial ribosomal protein L40##CU013420|MRPL40|64976|mitochondrial ribosomal protein L40##AK057708|MRPL40|64976|mitochondrial ribosomal protein L40##BC030758|C22orf39|128977|chromosome 22 open reading frame 39##AK299950|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##AK095271|C22orf39|128977|chromosome 22 open reading frame 39##AK308642|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##CR456339|C22orf39|128977|chromosome 22 open reading frame 39##BC046204|C22orf39|128977|chromosome 22 open reading frame 39##BC062599|C22orf39|128977|chromosome 22 open reading frame 39##AK289809|HIRA|7290|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)##AK290073|C22orf39|128977|chromosome 22 open reading frame 39##NM_001166242|C22orf39|128977|chromosome 22 open reading frame 39##NM_173793|C22orf39|128977|chromosome 22 open reading frame 39	0.0	0.48242	CTCF.p2:-11:0.482
chr3	27496235	27496311	reg1003066.p1	4.145	+	TSC_hg19_v1_chr3_-_27410884 AK123061 NM_199347	-85360	-	BC067784 TSC_hg19_v1_chr3_+_26664296 AF396933 NM_052953	-831973	+	TSC_hg19_v1_chr3_+_25831590 NM_001145391 NM_017897 AK000611 AK304821 AK225260 BC008202	-1664693	+	AF047033 AF089726 NM_003615	1971	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	29552	-	TSC_hg19_v1_chr3_-_27525893 AK309734	29657	-	AK123061|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##NM_199347|NEK10|152110|NIMA (never in mitosis gene a)- related kinase 10##BC067784|LRRC3B|116135|leucine rich repeat containing 3B##AF396933|LRRC3B|116135|leucine rich repeat containing 3B##NM_052953|LRRC3B|116135|leucine rich repeat containing 3B##NM_001145391|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##NM_017897|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK000611|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK304821|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AK225260|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##BC008202|OXSM|54995|3-oxoacyl-ACP synthase, mitochondrial##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.0	0.0	
chr4	108917989	108918107	reg1015587.p1	4.145	+	TSC_hg19_v1_chr4_+_108911045 BC000306 AM392952 AM393255 DQ891419 DQ894593 AB528829 AF001902	-6975	+	AK314444 TSC_hg19_v1_chr4_+_108911011	-7036	+	AF001903 NM_001184705 NM_005327 TSC_hg19_v1_chr4_+_108910984 X96752	-7112	+	AK303272 NM_001166119	169866	-	TSC_hg19_v1_chr4_+_109088684 BC020624	170636	+	TSC_hg19_v1_chr4_-_109090113 AF288571 AK225772 NM_001130713 NM_001130714 NM_016269	171751	-	BC000306|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ891419|HADH|3033|hydroxyacyl-CoA dehydrogenase##DQ894593|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001902|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK314444|HADH|3033|hydroxyacyl-CoA dehydrogenase##AF001903|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_001184705|HADH|3033|hydroxyacyl-CoA dehydrogenase##NM_005327|HADH|3033|hydroxyacyl-CoA dehydrogenase##X96752|HADH|3033|hydroxyacyl-CoA dehydrogenase##AK303272|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001166119|LEF1|51176|lymphoid enhancer-binding factor 1##BC020624|LOC641518|641518|uncharacterized LOC641518##AF288571|LEF1|51176|lymphoid enhancer-binding factor 1##AK225772|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130713|LEF1|51176|lymphoid enhancer-binding factor 1##NM_001130714|LEF1|51176|lymphoid enhancer-binding factor 1##NM_016269|LEF1|51176|lymphoid enhancer-binding factor 1	0.998201	0.0	denovo_WM_7:9:0.310	denovo_WM_7:10:0.310	denovo_WM_7:11:0.310
chr7	7855793	7855916	reg1014232.p2	4.145	+	BC009868 NM_002947	-97617	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-175481	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-175767	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	152579	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	445862	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	445937	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chr14	32655535	32655649	reg1013076.p1	4.144	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-109086	+	TSC_hg19_v1_chr14_+_32546223 BC075799	-109347	+	TSC_hg19_v1_chr14_+_32546174 BC050059	-109413	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	142944	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	752898	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	1764557	-	NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC075799|ARHGAP5|394|Rho GTPase activating protein 5##BC050059|ARHGAP5|394|Rho GTPase activating protein 5##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)	0.989101	0.0	denovo_WM_7:-9:0.772
chr2	234160067	234160241	reg1013511.p2	4.144	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-235038	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-235095	+	BC069151 BC107053 NM_005383	-262773	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	112	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	169	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	203	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	0.119509	0.071287	
chr2	46095345	46095525	reg1010086.p1	4.144	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-216361	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-257028	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-300307	-	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	429156	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	429540	+	NM_001145051	611268	+	AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375	1.997357	0.0	
chr2	54327272	54327414	reg1012905.p1	4.144	+	TSC_hg19_v1_chr2_-_54198154 AB621805	-129211	-	D38521 TSC_hg19_v1_chr2_-_54197945 AY894756 AY894754 AY894755 NM_014614	-129462	-	AF072693 BC110915 TSC_hg19_v1_chr2_-_54087105 AK314885 NM_001164165 NM_006794	-240225	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	15251	+	BC068576 AK097417 NM_001003937	156032	-	AK097617 NM_001100396 BC126244 BC126246 BC144191 BC144192 BC031669	230745	+	D38521|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894756|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894754|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AY894755|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##NM_014614|PSME4|23198|proteasome (prosome, macropain) activator subunit 4##AF072693|GPR75|10936|G protein-coupled receptor 75##BC110915|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##AK314885|GPR75|10936|G protein-coupled receptor 75##NM_001164165|GPR75-ASB3|100302652|GPR75-ASB3 readthrough##NM_006794|GPR75|10936|G protein-coupled receptor 75##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type##BC068576|TSPYL6|388951|TSPY-like 6##AK097417|TSPYL6|388951|TSPY-like 6##NM_001003937|TSPYL6|388951|TSPY-like 6##AK097617|C2orf73|129852|chromosome 2 open reading frame 73##NM_001100396|C2orf73|129852|chromosome 2 open reading frame 73##BC126244|C2orf73|129852|chromosome 2 open reading frame 73##BC126246|C2orf73|129852|chromosome 2 open reading frame 73##BC144191|C2orf73|129852|chromosome 2 open reading frame 73##BC144192|C2orf73|129852|chromosome 2 open reading frame 73##BC031669|C2orf73|129852|chromosome 2 open reading frame 73	0.684042	0.0	denovo_WM_7:105:0.313	denovo_WM_7:106:0.313	denovo_WM_7:107:0.313
chr7	35075992	35076138	reg1005878.p2	4.144	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	-378146	+	AK289963 NM_133468 AK096150 BC060868	-1130923	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-1906984	+	DQ287932 NM_015283	1587	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	149727	-	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	217665	-	AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20	0.993728	0.0	denovo_WM_7:-34:0.393	denovo_WM_7:-35:0.494
chr8	29431455	29431578	reg1011322.p1	4.144	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-223446	-	AL137704 NM_057158	-225195	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-310902	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	508958	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	509056	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	521427	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.985014	0.0	denovo_WM_7:31:0.494	denovo_WM_7:32:0.408
chr1	235531835	235531958	reg1016320.p2	4.143	+	TSC_hg19_v1_chr1_+_235530768 AK093397 AK292287 BC008654	-1124	+	NM_001079515 NM_003193 TSC_hg19_v1_chr1_+_235530744 AK296185 AK298050	-1153	+	AK309831 TSC_hg19_v1_chr1_+_235492306	-39601	+	TSC_hg19_v1_chr1_-_235667473 AK091497	135613	-	TSC_hg19_v1_chr1_-_235667723 BC016974 AK130297	135837	-	BC029564 NM_152490 TSC_hg19_v1_chr1_-_235667782	135885	-	AK093397|TBCE|6905|tubulin folding cofactor E##AK292287|TBCE|6905|tubulin folding cofactor E##BC008654|TBCE|6905|tubulin folding cofactor E##NM_001079515|TBCE|6905|tubulin folding cofactor E##NM_003193|TBCE|6905|tubulin folding cofactor E##AK296185|TBCE|6905|tubulin folding cofactor E##AK298050|TBCE|6905|tubulin folding cofactor E##AK091497|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2##BC016974|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2##AK130297|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2##BC029564|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2##NM_152490|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2	0.999635	0.0	
chr16	10128355	10128506	reg1012174.p2	4.143	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-942827	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-942890	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-1071135	-	BC143273 U09002 NM_001134408	147403	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	147758	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	148247	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	1.941507	0.0	denovo_WM_7:-15:0.658	denovo_WM_7:-30:0.675
chr5	150695659	150695781	reg1017852.p1	4.143	+	AK127978 NM_001145017 NM_181774	-12391	-	NM_000405 NM_001167607 TSC_hg19_v1_chr5_+_150632745 AK225978 L01439 M76477 AK312494 X62078 AK298867 BC009273 X61095 CU679281 DQ891914 DQ895098 X16087	-63005	+	TSC_hg19_v1_chr5_-_150603654 AK292841 AK298063 AL713742 NM_015621	-92040	-	BC101100 BC101101 BC101102 BC101103 AK297682 AY162214 AK122630 AK309575 NM_181776	31399	-	TSC_hg19_v1_chr5_+_150827163 NM_078483 BX537963 AY227111	131440	+	AK309323 TSC_hg19_v1_chr5_+_150827187	131469	+	AK127978|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_001145017|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_181774|SLC36A3|285641|solute carrier family 36 (proton/amino acid symporter), member 3##NM_000405|GM2A|2760|GM2 ganglioside activator##NM_001167607|GM2A|2760|GM2 ganglioside activator##L01439|GM2A|2760|GM2 ganglioside activator##M76477|GM2A|2760|GM2 ganglioside activator##AK312494|GM2A|2760|GM2 ganglioside activator##X62078|GM2A|2760|GM2 ganglioside activator##AK298867|GM2A|2760|GM2 ganglioside activator##BC009273|GM2A|2760|GM2 ganglioside activator##X61095|GM2A|2760|GM2 ganglioside activator##DQ891914|GM2A|2760|GM2 ganglioside activator##DQ895098|GM2A|2760|GM2 ganglioside activator##X16087|GM2A|2760|GM2 ganglioside activator##AK292841|CCDC69|26112|coiled-coil domain containing 69##AK298063|CCDC69|26112|coiled-coil domain containing 69##AL713742|CCDC69|26112|coiled-coil domain containing 69##NM_015621|CCDC69|26112|coiled-coil domain containing 69##BC101100|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101101|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101102|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##BC101103|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK297682|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AY162214|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##AK309575|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##NM_181776|SLC36A2|153201|solute carrier family 36 (proton/amino acid symporter), member 2##NM_078483|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##BX537963|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AY227111|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1##AK309323|SLC36A1|206358|solute carrier family 36 (proton/amino acid symporter), member 1	0.0	0.873271	CTCF.p2:39:0.873
chr17	65452381	65452510	reg1015550.p1	4.142	+	BC007905 NM_012417 NM_181671	-78522	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-78857	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-79036	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	261605	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	369257	+	AK293224 TSC_hg19_v1_chr17_+_65822221	369772	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	0.0	0.0	
chr2	29980774	29980920	reg1015560.p1	4.142	+	TSC_hg19_v1_chr2_+_29338370 BC013862 NM_024692 AL834443	-642492	+	NM_001029883	-683721	-	AK296977 NM_199280	-776684	+	EU788003 EU788004 EU788005 EU788006 EU788007 EU788008 EU788009 EU788010 FJ838786 FJ838787 U62540 TSC_hg19_v1_chr2_-_30144453 AK296218 NM_004304	163607	-	NM_001127399 NM_001127400 NM_001127401 NM_016061 TSC_hg19_v1_chr2_+_30369786	388923	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	388986	+	BC013862|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##NM_024692|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##AL834443|CLIP4|79745|CAP-GLY domain containing linker protein family, member 4##NM_001029883|C2orf71|388939|chromosome 2 open reading frame 71##AK296977|FAM179A|165186|family with sequence similarity 179, member A##NM_199280|FAM179A|165186|family with sequence similarity 179, member A##EU788003|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788004|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788005|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788006|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788007|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788008|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788009|ALK|238|anaplastic lymphoma receptor tyrosine kinase##EU788010|ALK|238|anaplastic lymphoma receptor tyrosine kinase##FJ838786|ALK|238|anaplastic lymphoma receptor tyrosine kinase##FJ838787|ALK|238|anaplastic lymphoma receptor tyrosine kinase##U62540|ALK|238|anaplastic lymphoma receptor tyrosine kinase##AK296218|ALK|238|anaplastic lymphoma receptor tyrosine kinase##NM_004304|ALK|238|anaplastic lymphoma receptor tyrosine kinase##NM_001127399|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127400|YPEL5|51646|yippee-like 5 (Drosophila)##NM_001127401|YPEL5|51646|yippee-like 5 (Drosophila)##NM_016061|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)	0.995749	0.0	
chr2	69951903	69952030	reg1017210.p1	4.142	+	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	-80874	-	TSC_hg19_v1_chr2_-_69870872 AB028971	-81109	-	TSC_hg19_v1_chr2_-_69870783 AK310951 AK056043	-81198	-	BC063672 NM_001153 BC000182 TSC_hg19_v1_chr2_+_69969232 AK293177	17204	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	17299	+	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	104841	+	NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1##AB028971|AAK1|22848|AP2 associated kinase 1##AK310951|AAK1|22848|AP2 associated kinase 1##AK056043|AAK1|22848|AP2 associated kinase 1##BC063672|ANXA4|307|annexin A4##NM_001153|ANXA4|307|annexin A4##BC000182|ANXA4|307|annexin A4##AK293177|ANXA4|307|annexin A4##BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)	0.0	0.936813	CTCF.p2:-5:0.937
chr2	80823300	80823401	reg1012572.p1	4.142	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-291507	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-291625	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-291825	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3863020	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3863045	-	NM_003849	3863235	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	2.971157	0.0	denovo_WM_7:62:0.473	denovo_WM_7:63:0.284	denovo_WM_7:78:0.291	denovo_WM_7:79:0.288	denovo_WM_7:94:0.296	denovo_WM_7:95:0.487
chr5	158521000	158521180	reg1012893.p1	4.142	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1235000	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1336710	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1350350	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	5367	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	5652	-	AK304228 NM_001199382	113558	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	2.948912	0.0	denovo_WM_7:-70:0.235	denovo_WM_7:-71:0.235	denovo_WM_7:-72:0.235	denovo_WM_7:-73:0.235	denovo_WM_7:91:0.595	denovo_WM_7:92:0.329	denovo_WM_7:106:0.267	denovo_WM_7:107:0.645
chr5	177544525	177544596	reg1010739.p1	4.142	+	TSC_hg19_v1_chr5_+_177540665 BC053323 NM_015111	-3932	+	TSC_hg19_v1_chr5_+_177482580 AB055766	-61982	+	AF076215 NM_006261	-121318	-	TSC_hg19_v1_chr5_+_177558014 AK093481 AK094065 AX748156 AX748436 AK125337	13451	+	TSC_hg19_v1_chr5_+_177558026 BC009911 DQ494789 NM_022762	13472	+	CR457238 AF401219 TSC_hg19_v1_chr5_-_177580868 AK000486 BC000009 AF161404 AJ293309 BC006387	36297	-	BC053323|N4BP3|23138|NEDD4 binding protein 3##NM_015111|N4BP3|23138|NEDD4 binding protein 3##AB055766|RPL19|6143|ribosomal protein L19##AF076215|PROP1|5626|PROP paired-like homeobox 1##NM_006261|PROP1|5626|PROP paired-like homeobox 1##AK093481|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK094065|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK125337|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##BC009911|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##DQ494789|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##NM_022762|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##CR457238|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF401219|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AK000486|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC000009|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AF161404|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##AJ293309|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)##BC006387|NHP2|55651|NHP2 ribonucleoprotein homolog (yeast)	0.994248	0.0	
chr6	106969112	106969292	reg1004348.p2	4.142	+	TSC_hg19_v1_chr6_+_106960443 U83115	-8791	+	AK056705 NM_001624	-9473	+	TSC_hg19_v1_chr6_-_106773659 CR749386 BC093011 AK001899 Y11588 AK299577 NM_004849	-195539	-	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	108078	-	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	108295	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	380270	+	U83115|AIM1|202|absent in melanoma 1##AK056705|AIM1|202|absent in melanoma 1##NM_001624|AIM1|202|absent in melanoma 1##CR749386|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC093011|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK001899|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##Y11588|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##AK299577|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##NM_004849|ATG5|9474|ATG5 autophagy related 5 homolog (S. cerevisiae)##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203	0.0	0.0	
chr7	74179261	74179398	reg1003832.p2	4.142	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	-107207	+	TSC_hg19_v1_chr7_+_74072046 BC070484	-107285	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	-107308	+	BC002816 NM_000265 BC065731 AK127905 AK223217 AK292094 AK316341 AK316552 AB590366 CU678218 DQ893150 DQ896445 U25793	9023	+	AY260739 AY312853 AY336980 BC047706 BC061590 AK225845 AY336979 BC136849 BC067859 AK291431 AY336981 BC038098 NM_173537 AK098269	88510	-	TSC_hg19_v1_chr7_-_74306679 BC002581	127346	-	BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC002816|NCF1|653361|neutrophil cytosolic factor 1##NM_000265|NCF1|653361|neutrophil cytosolic factor 1##BC065731|NCF1|653361|neutrophil cytosolic factor 1##AK127905|NCF1|653361|neutrophil cytosolic factor 1##AK223217|NCF1|653361|neutrophil cytosolic factor 1##AK292094|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316341|NCF1B|654816|neutrophil cytosolic factor 1B pseudogene##AK316552|NCF1|653361|neutrophil cytosolic factor 1##DQ893150|NCF1|653361|neutrophil cytosolic factor 1##DQ896445|NCF1|653361|neutrophil cytosolic factor 1##U25793|NCF1|653361|neutrophil cytosolic factor 1##AY260739|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336980|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC047706|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC061590|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY336979|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AY336981|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC038098|GTF2IRD2|84163|GTF2I repeat domain containing 2##NM_173537|GTF2IRD2|84163|GTF2I repeat domain containing 2##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC002581|STAG3L2|442582|stromal antigen 3-like 2	0.987761	0.0	denovo_WM_7:29:0.700	denovo_WM_7:30:0.261
chr8	54675238	54675358	reg1014347.p2	4.142	+	BC099912 AK310407 AY168006 NM_000912 AY466378	-511086	-	BC069117 BC107101 NM_005285	-822831	+	AB059622 TSC_hg19_v1_chr8_-_53626996 NM_001083617 NM_014781	-1048285	-	AK098305 NM_213620 BC014862 AF125105 TSC_hg19_v1_chr8_-_54755806 BC007421 BC007454 BC025275 AF112204 AF132945 AK308204	80381	-	AK022345 TSC_hg19_v1_chr8_-_54755834	80529	-	AF113222 TSC_hg19_v1_chr8_-_54755840 NM_015941 NM_213619 AK303229	80554	-	BC099912|OPRK1|4986|opioid receptor, kappa 1##AK310407|OPRK1|4986|opioid receptor, kappa 1##AY168006|OPRK1|4986|opioid receptor, kappa 1##NM_000912|OPRK1|4986|opioid receptor, kappa 1##AY466378|OPRK1|4986|opioid receptor, kappa 1##BC069117|NPBWR1|2831|neuropeptides B/W receptor 1##BC107101|NPBWR1|2831|neuropeptides B/W receptor 1##NM_005285|NPBWR1|2831|neuropeptides B/W receptor 1##AB059622|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_001083617|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_014781|RB1CC1|9821|RB1-inducible coiled-coil 1##AK098305|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213620|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC014862|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF125105|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007421|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007454|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC025275|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF112204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF132945|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK308204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK022345|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF113222|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_015941|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213619|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK303229|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	0.8384	0.0	denovo_WM_7:-27:0.640
chr11	113310570	113310667	reg1013621.p1	4.141	+	AJ541797 NM_178510 AF487542	-52059	+	NM_017868 AK023921 TSC_hg19_v1_chr11_+_113185315 AK292331 AK091887 BC011546 BC019086 BC032355	-125328	+	TSC_hg19_v1_chr11_+_112832281 U63041 AK292453	-478312	+	S69899 BC021195 NM_000795 NM_016574 M30625	35357	-	AK295366 BC047222 AK294313 BC028065 BC121802 BC121803 NM_030770 TSC_hg19_v1_chr11_-_113577091 AB028140	266440	-	TSC_hg19_v1_chr11_-_113644415 U54996 BC128264	333793	-	AJ541797|ANKK1|255239|ankyrin repeat and kinase domain containing 1##NM_178510|ANKK1|255239|ankyrin repeat and kinase domain containing 1##AF487542|ANKK1|255239|ankyrin repeat and kinase domain containing 1##NM_017868|TTC12|54970|tetratricopeptide repeat domain 12##AK023921|TTC12|54970|tetratricopeptide repeat domain 12##AK292331|TTC12|54970|tetratricopeptide repeat domain 12##AK091887|TTC12|54970|tetratricopeptide repeat domain 12##BC011546|TTC12|54970|tetratricopeptide repeat domain 12##BC019086|TTC12|54970|tetratricopeptide repeat domain 12##BC032355|TTC12|54970|tetratricopeptide repeat domain 12##U63041|NCAM1|4684|neural cell adhesion molecule 1##AK292453|NCAM1|4684|neural cell adhesion molecule 1##S69899|DRD2|1813|dopamine receptor D2##BC021195|DRD2|1813|dopamine receptor D2##NM_000795|DRD2|1813|dopamine receptor D2##NM_016574|DRD2|1813|dopamine receptor D2##M30625|DRD2|1813|dopamine receptor D2##AK295366|TMPRSS5|80975|transmembrane protease, serine 5##BC047222|TMPRSS5|80975|transmembrane protease, serine 5##AK294313|TMPRSS5|80975|transmembrane protease, serine 5##BC028065|TMPRSS5|80975|transmembrane protease, serine 5##BC121802|TMPRSS5|80975|transmembrane protease, serine 5##BC121803|TMPRSS5|80975|transmembrane protease, serine 5##NM_030770|TMPRSS5|80975|transmembrane protease, serine 5##AB028140|TMPRSS5|80975|transmembrane protease, serine 5##U54996|ZW10|9183|ZW10, kinetochore associated, homolog (Drosophila)##BC128264|ZW10|9183|ZW10, kinetochore associated, homolog (Drosophila)	1.992625	0.0	denovo_WM_7:-29:0.237	denovo_WM_7:-30:0.203	denovo_WM_7:-49:0.210	denovo_WM_7:-50:0.243
chr13	66028319	66028448	reg1012814.p1	4.141	+	AK289924 NM_022843	-4038729	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-4039130	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-5056904	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	1776121	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	4654158	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	6411876	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	1.353302	0.0	denovo_WM_7:-21:0.303	denovo_WM_7:-22:0.558	denovo_WM_7:59:0.363
chr15	70964307	70964487	reg1000985.p1	4.141	+	TSC_hg19_v1_chr15_-_70878946 BC040579	-85453	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	-574154	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	-574170	-	BC016881 AL834243 NM_001008224 AK055435	30230	-	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	91445	-	CU675231 BC006082 BC009446 BC014018 AL833876 BC039153 TSC_hg19_v1_chr15_-_71146496 AK130092 AF443828 AF443829 AK002058 NM_018357 NM_197958	182071	-	BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC006082|LARP6|55323|La ribonucleoprotein domain family, member 6##BC009446|LARP6|55323|La ribonucleoprotein domain family, member 6##BC014018|LARP6|55323|La ribonucleoprotein domain family, member 6##AL833876|LARP6|55323|La ribonucleoprotein domain family, member 6##BC039153|LARP6|55323|La ribonucleoprotein domain family, member 6##AK130092|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443828|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443829|LARP6|55323|La ribonucleoprotein domain family, member 6##AK002058|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_018357|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_197958|LARP6|55323|La ribonucleoprotein domain family, member 6	0.0	0.0	
chr17	46659782	46659905	reg1013334.p1	4.141	+	TSC_hg19_v1_chr17_-_46655544 AL137449 BC049204 NM_024015	-4200	-	NM_002146 AK027609	-8015	-	EU446481 BC074805 BC074806 X16665 NM_002145	-37510	-	AK315102 TSC_hg19_v1_chr17_-_46667604 AK316245 AK291182	7770	-	AB464575 BC117247 NM_002147 TSC_hg19_v1_chr17_-_46671142 AK314964	11257	-	M92299 TSC_hg19_v1_chr17_-_46671405	11524	-	AL137449|HOXB4|3214|homeobox B4##BC049204|HOXB4|3214|homeobox B4##NM_024015|HOXB4|3214|homeobox B4##NM_002146|HOXB3|3213|homeobox B3##AK027609|HOXB3|3213|homeobox B3##EU446481|HOXB2|3212|homeobox B2##BC074805|HOXB2|3212|homeobox B2##BC074806|HOXB2|3212|homeobox B2##X16665|HOXB2|3212|homeobox B2##NM_002145|HOXB2|3212|homeobox B2##AK315102|HOXB3|3213|homeobox B3##AK316245|HOXB3|3213|homeobox B3##AK291182|HOXB3|3213|homeobox B3##BC117247|HOXB5|3215|homeobox B5##NM_002147|HOXB5|3215|homeobox B5##AK314964|HOXB5|3215|homeobox B5##M92299|HOXB5|3215|homeobox B5	0.010425	0.0	
chr18	3596969	3597149	reg1010665.p1	4.141	+	TSC_hg19_v1_chr18_+_3594077 AK093095 AX747919 BC137437	-2917	+	NM_173211	-143288	+	TSC_hg19_v1_chr18_+_3451599 NM_170695 NM_173210 AK307230 BC031268	-145428	+	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	248271	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	277225	-	AK294777 AK294717 NM_001242762 NM_001242763	277668	-	AK093095|FLJ35776|649446|uncharacterized LOC649446##BC137437|FLJ35776|649446|uncharacterized LOC649446##NM_173211|TGIF1|7050|TGFB-induced factor homeobox 1##NM_170695|TGIF1|7050|TGFB-induced factor homeobox 1##NM_173210|TGIF1|7050|TGFB-induced factor homeobox 1##BC031268|TGIF1|7050|TGFB-induced factor homeobox 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1	0.121741	0.0	
chr2	231191524	231191697	reg1013722.p1	4.141	+	AK301317 AK301267 NM_001005176 NM_007237 U36499 U36500 U63420 BC105744 BC105960 BC105743 BC054890 BC070160 BC038091	-101147	+	AK301097 NM_001185015	-101167	-	AL832300 BC012447 AK026488 AF280094 AF280095 BC019059 NM_004509 NM_004510 NM_080424 TSC_hg19_v1_chr2_-_231084830	-106895	-	TSC_hg19_v1_chr2_+_231191907 NM_138402	316	+	NM_001080391 NM_001206701 NM_001206702 NM_001206703 NM_003113 TSC_hg19_v1_chr2_+_231280903	89277	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	89309	+	AK301317|SP140|11262|SP140 nuclear body protein##AK301267|SP140|11262|SP140 nuclear body protein##NM_001005176|SP140|11262|SP140 nuclear body protein##NM_007237|SP140|11262|SP140 nuclear body protein##U36499|SP140|11262|SP140 nuclear body protein##U36500|SP140|11262|SP140 nuclear body protein##U63420|SP140|11262|SP140 nuclear body protein##BC105744|SP140|11262|SP140 nuclear body protein##BC105960|SP140|11262|SP140 nuclear body protein##BC105743|SP140|11262|SP140 nuclear body protein##BC054890|SP140|11262|SP140 nuclear body protein##BC070160|SP140|11262|SP140 nuclear body protein##BC038091|SP140|11262|SP140 nuclear body protein##AK301097|SP110|3431|SP110 nuclear body protein##NM_001185015|SP110|3431|SP110 nuclear body protein##AL832300|SP110|3431|SP110 nuclear body protein##BC012447|SP110|3431|SP110 nuclear body protein##AK026488|SP110|3431|SP110 nuclear body protein##AF280094|SP110|3431|SP110 nuclear body protein##AF280095|SP110|3431|SP110 nuclear body protein##BC019059|SP110|3431|SP110 nuclear body protein##NM_004509|SP110|3431|SP110 nuclear body protein##NM_004510|SP110|3431|SP110 nuclear body protein##NM_080424|SP110|3431|SP110 nuclear body protein##NM_138402|SP140L|93349|SP140 nuclear body protein-like##NM_001080391|SP100|6672|SP100 nuclear antigen##NM_001206701|SP100|6672|SP100 nuclear antigen##NM_001206702|SP100|6672|SP100 nuclear antigen##NM_001206703|SP100|6672|SP100 nuclear antigen##NM_003113|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen	0.991723	0.0	denovo_WM_7:-1:0.877
chr3	112201877	112202057	reg1013981.p2	4.141	+	AL832529 AK129797 AK293399 BC031103 TSC_hg19_v1_chr3_+_112052024 AK074972	-149943	+	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	-150009	+	BC044801 NM_183061 AK128084	-188879	-	AK292692 NM_001085357 NM_181780	16428	-	AK307432 AB079384 CU692886 DQ893424 DQ896774 AF202092 TSC_hg19_v1_chr3_-_112280499 BC024221 NM_022488 AL137515	78475	-	TSC_hg19_v1_chr3_-_112280761 BC002830	78794	-	AL832529|CD200|4345|CD200 molecule##AK129797|CD200|4345|CD200 molecule##AK293399|CD200|4345|CD200 molecule##BC031103|CD200|4345|CD200 molecule##AK074972|CD200|4345|CD200 molecule##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK292692|BTLA|151888|B and T lymphocyte associated##NM_001085357|BTLA|151888|B and T lymphocyte associated##NM_181780|BTLA|151888|B and T lymphocyte associated##AK307432|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AB079384|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ893424|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##DQ896774|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AF202092|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC024221|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##NM_022488|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##AL137515|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)##BC002830|ATG3|64422|ATG3 autophagy related 3 homolog (S. cerevisiae)	1.213868	0.0	
chr4	2749872	2749995	reg1007065.p1	4.141	+	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	-122760	+	NM_001185009 BC031935	-278753	+	TSC_hg19_v1_chr4_+_2470846 AK312534 AK309509 U95140	-279057	+	AK026176 NM_001161527	7817	-	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	8130	-	TSC_hg19_v1_chr4_+_2794755 AK225497 NM_001122681 BC022996	44802	+	AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##NM_001185009|RNF4|6047|ring finger protein 4##BC031935|RNF4|6047|ring finger protein 4##AK312534|RNF4|6047|ring finger protein 4##AK309509|RNF4|6047|ring finger protein 4##U95140|RNF4|6047|ring finger protein 4##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2##AK225497|SH3BP2|6452|SH3-domain binding protein 2##NM_001122681|SH3BP2|6452|SH3-domain binding protein 2##BC022996|SH3BP2|6452|SH3-domain binding protein 2	0.997529	0.0	denovo_WM_7:-20:0.884
chr5	139624167	139624292	reg1014353.p1	4.141	+	TSC_hg19_v1_chr5_+_139554722 BC023982 BC013643 AK225992 AK311640 AK312045 AJ245877	-69458	+	TSC_hg19_v1_chr5_+_139554672 NM_032412	-69575	+	BC041380 NM_001007189	-118710	+	AB464063 TSC_hg19_v1_chr5_-_139682672	58435	-	AK315353 TSC_hg19_v1_chr5_-_139682676	58446	-	TSC_hg19_v1_chr5_-_139682680 BC011869 BC003620 BC006202 AK223394 NM_002622	58455	-	BC023982|C5orf32|84418|chromosome 5 open reading frame 32##BC013643|C5orf32|84418|chromosome 5 open reading frame 32##AK225992|C5orf32|84418|chromosome 5 open reading frame 32##AK312045|C5orf32|84418|chromosome 5 open reading frame 32##AJ245877|C5orf32|84418|chromosome 5 open reading frame 32##NM_032412|C5orf32|84418|chromosome 5 open reading frame 32##BC041380|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##NM_001007189|IGIP|492311|IgA-inducing protein homolog (Bos taurus)##AK315353|PFDN1|5201|prefoldin subunit 1##BC011869|PFDN1|5201|prefoldin subunit 1##BC003620|PFDN1|5201|prefoldin subunit 1##BC006202|PFDN1|5201|prefoldin subunit 1##AK223394|PFDN1|5201|prefoldin subunit 1##NM_002622|PFDN1|5201|prefoldin subunit 1	0.0	1.043499	CTCF.p2:-2:0.953
chr10	112011242	112011351	reg1013707.p1	4.140	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-25475	+	BC012907 NM_001008541	-41308	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-43937	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	53297	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	53404	-	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	246455	+	AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5	0.0	0.0	
chr1	112013871	112014009	reg1012401.p1	4.140	+	TSC_hg19_v1_chr1_+_111992132 X60221	-21786	+	BC005960 TSC_hg19_v1_chr1_+_111992113 AY871272 AK313541 AK223018	-21824	+	TSC_hg19_v1_chr1_+_111992097 D28383 BC005366 AK311287	-21846	+	TSC_hg19_v1_chr1_+_112016601 BC017973 NM_174896	2658	+	NM_000677 NM_020683	32802	-	BC041707 BC064411 NM_001081976	92639	-	X60221|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC005960|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AY871272|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK313541|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK223018|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##D28383|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC005366|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC017973|C1orf162|128346|chromosome 1 open reading frame 162##NM_174896|C1orf162|128346|chromosome 1 open reading frame 162##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor	0.901965	0.0	denovo_WM_7:17:0.543
chr14	97921576	97921669	reg1015441.p1	4.140	+	TSC_hg19_v1_chr14_+_97263749 NM_003384 AK290110 BC103761 AB000449 BC112075 BC113510 BC005970	-657907	+	TSC_hg19_v1_chr14_+_96968778 BX161482 BC015150	-952838	+	TSC_hg19_v1_chr14_+_96968726 BX248753 AK295020 AK307659 BC000927	-952876	+	AK098639 NM_182560	1256327	+	AY752976 AB043584 TSC_hg19_v1_chr14_-_99737679	1815995	-	AJ404614 NM_022898 NM_138576 TSC_hg19_v1_chr14_-_99737958	1816268	-	NM_003384|VRK1|7443|vaccinia related kinase 1##AK290110|VRK1|7443|vaccinia related kinase 1##BC103761|VRK1|7443|vaccinia related kinase 1##AB000449|VRK1|7443|vaccinia related kinase 1##BC112075|VRK1|7443|vaccinia related kinase 1##BC113510|VRK1|7443|vaccinia related kinase 1##BC005970|VRK1|7443|vaccinia related kinase 1##BX161482|PAPOLA|10914|poly(A) polymerase alpha##BC015150|PAPOLA|10914|poly(A) polymerase alpha##BX248753|PAPOLA|10914|poly(A) polymerase alpha##AK295020|PAPOLA|10914|poly(A) polymerase alpha##AK307659|PAPOLA|10914|poly(A) polymerase alpha##BC000927|PAPOLA|10914|poly(A) polymerase alpha##AK098639|C14orf177|283598|chromosome 14 open reading frame 177##NM_182560|C14orf177|283598|chromosome 14 open reading frame 177##AB043584|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##AJ404614|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_022898|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)##NM_138576|BCL11B|64919|B-cell CLL/lymphoma 11B (zinc finger protein)	0.0	0.0	
chr19	11563330	11563510	reg1008097.p4	4.140	+	AB385574 AF144075 TSC_hg19_v1_chr19_+_11546995 BC013586	-16451	+	TSC_hg19_v1_chr19_+_11546486 AK290433	-16878	+	J03075 TSC_hg19_v1_chr19_+_11546469 Z36798 AK225390	-16952	+	BC080533 BC011875 TSC_hg19_v1_chr19_-_11564576	1152	-	TSC_hg19_v1_chr19_-_11565617 BC068222	2208	-	AY036909 L26405 D26158 BC014144 NM_001420 NM_032281 TSC_hg19_v1_chr19_-_11591862	28233	-	AF144075|PRKCSH|5589|protein kinase C substrate 80K-H##BC013586|PRKCSH|5589|protein kinase C substrate 80K-H##AK290433|PRKCSH|5589|protein kinase C substrate 80K-H##J03075|PRKCSH|5589|protein kinase C substrate 80K-H##Z36798|PRKCSH|5589|protein kinase C substrate 80K-H##AK225390|PRKCSH|5589|protein kinase C substrate 80K-H##BC080533|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC011875|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##AY036909|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##L26405|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##D26158|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##BC014144|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_001420|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)##NM_032281|ELAVL3|1995|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	1.825113	0.089266	denovo_WM_7:-21:0.327	denovo_WM_7:-80:0.868
chr2	109830904	109830970	reg1010882.p2	4.140	+	NM_001099289 DQ307286	-84874	+	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	-225190	-	TSC_hg19_v1_chr2_-_109605623 AK296936	-225318	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	540544	-	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	540788	-	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	541008	+	NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##AK296936|EDAR|10913|ectodysplasin A receptor##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57	0.996031	0.0	denovo_WM_7:0:0.292	denovo_WM_7:-1:0.409
chr2	231921245	231921341	reg1014171.p2	4.140	+	TSC_hg19_v1_chr2_+_231902259 NM_001144994	-19056	+	NM_139073 AK093385 AX748090 BC036248 AK126086 BC047704 CU690472	-60401	+	BC032694 NM_005683	-131353	-	TSC_hg19_v1_chr2_+_231921588 NM_001191037 NM_002807 AK307415 BC094720	284	+	TSC_hg19_v1_chr2_+_231921606 BC064398	308	+	BC014013 TSC_hg19_v1_chr2_+_231921608 BC005036 BC032445 BC112344 BC114434 AK312528 BC001053 AK307513	323	+	NM_001144994|C2orf72|257407|chromosome 2 open reading frame 72##NM_139073|SPATA3|130560|spermatogenesis associated 3##AK093385|SPATA3|130560|spermatogenesis associated 3##BC036248|SPATA3|130560|spermatogenesis associated 3##AK126086|SPATA3|130560|spermatogenesis associated 3##BC047704|SPATA3|130560|spermatogenesis associated 3##BC032694|GPR55|9290|G protein-coupled receptor 55##NM_005683|GPR55|9290|G protein-coupled receptor 55##NM_001191037|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##NM_002807|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307415|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC094720|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC064398|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC014013|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC032445|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC112344|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC114434|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK312528|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##BC001053|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1##AK307513|PSMD1|5707|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	0.970302	0.989579	CTCF.p2:-10:0.990	denovo_WM_7:-92:0.275	denovo_WM_7:-93:0.275	denovo_WM_7:-102:0.281
chr2	8442218	8442362	reg1017588.p2	4.140	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1384703	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1424427	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1435587	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	379913	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	535429	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	701531	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr5	13988048	13988183	reg1011765.p1	4.140	+	AX800026 AY045575 NM_001369	-43527	-	TSC_hg19_v1_chr5_-_11904184 AK296232	-2083931	-	U96136 EU328348 TSC_hg19_v1_chr5_-_11904098 AB013805 NM_001332	-2084079	-	AY050643 TSC_hg19_v1_chr5_-_14011873	23755	-	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	155557	+	TSC_hg19_v1_chr5_+_14488527 AK131423	500424	+	AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK296232|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##U96136|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##EU328348|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AB013805|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##NM_001332|CTNND2|1501|catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)	0.016928	0.0	
chr5	176767208	176767375	reg1011932.p2	4.140	+	NM_001142935 NM_031300	-28000	-	CU674382 DQ892734 DQ895981 DQ896213 BC041690 BC000745 BC032586 AF114834 AK222579 AK316468 AK057034 AK303397 TSC_hg19_v1_chr5_-_176738914	-28407	-	TSC_hg19_v1_chr5_+_176730812 BC000007 BC008866 AF087858 BC013733 AF112203 AF111112 AF153607 BC013748 NM_013237 BC008307 AF201925 CU680664 DQ891042 DQ894221 U94779	-36352	+	TSC_hg19_v1_chr5_-_176778650 U10362 AK222609	11348	-	TSC_hg19_v1_chr5_-_176778656 AK301607	11365	-	TSC_hg19_v1_chr5_-_176778666 AK292099 BC017263	11374	-	NM_001142935|MXD3|83463|MAX dimerization protein 3##NM_031300|MXD3|83463|MAX dimerization protein 3##DQ892734|MXD3|83463|MAX dimerization protein 3##DQ895981|MXD3|83463|MAX dimerization protein 3##DQ896213|MXD3|83463|MAX dimerization protein 3##BC041690|MXD3|83463|MAX dimerization protein 3##BC000745|MXD3|83463|MAX dimerization protein 3##BC032586|MXD3|83463|MAX dimerization protein 3##AF114834|MXD3|83463|MAX dimerization protein 3##AK222579|MXD3|83463|MAX dimerization protein 3##AK316468|MXD3|83463|MAX dimerization protein 3##AK057034|MXD3|83463|MAX dimerization protein 3##AK303397|MXD3|83463|MAX dimerization protein 3##BC000007|PRELID1|27166|PRELI domain containing 1##BC008866|PRELID1|27166|PRELI domain containing 1##AF087858|PRELID1|27166|PRELI domain containing 1##BC013733|PRELID1|27166|PRELI domain containing 1##AF112203|PRELID1|27166|PRELI domain containing 1##AF111112|PRELID1|27166|PRELI domain containing 1##AF153607|PRELID1|27166|PRELI domain containing 1##BC013748|PRELID1|27166|PRELI domain containing 1##NM_013237|PRELID1|27166|PRELI domain containing 1##BC008307|PRELID1|27166|PRELI domain containing 1##AF201925|PRELID1|27166|PRELI domain containing 1##DQ891042|PRELID1|27166|PRELI domain containing 1##DQ894221|PRELID1|27166|PRELI domain containing 1##U10362|LMAN2|10960|lectin, mannose-binding 2##AK222609|LMAN2|10960|lectin, mannose-binding 2##AK301607|LMAN2|10960|lectin, mannose-binding 2##AK292099|LMAN2|10960|lectin, mannose-binding 2##BC017263|LMAN2|10960|lectin, mannose-binding 2	0.896985	0.0	denovo_WM_7:35:0.753
chrX	106820282	106820439	reg1013892.p1	4.140	+	BC033510 NM_001169154 NM_173494	-370499	+	AK000137 TSC_hg19_v1_chrX_-_106449664 BC016327 BC017799 NM_017681	-370754	-	TSC_hg19_v1_chrX_-_106362053 AK023732 NM_001171080 NM_018301	-458300	-	NM_001204402 NM_002764 TSC_hg19_v1_chrX_+_106871719 D00860	51335	+	AK307748 AK312706 AK316467 TSC_hg19_v1_chrX_+_106871744 AK297968 BC001605 X15331 AK223169 DQ895833 EU176362 AB464022 CU674782	51438	+	BC018148 Z50781 NM_001015881	139293	-	BC033510|CXorf41|139212|chromosome X open reading frame 41##NM_001169154|CXorf41|139212|chromosome X open reading frame 41##NM_173494|CXorf41|139212|chromosome X open reading frame 41##AK000137|NUP62CL|54830|nucleoporin 62kDa C-terminal like##BC016327|NUP62CL|54830|nucleoporin 62kDa C-terminal like##BC017799|NUP62CL|54830|nucleoporin 62kDa C-terminal like##NM_017681|NUP62CL|54830|nucleoporin 62kDa C-terminal like##AK023732|RBM41|55285|RNA binding motif protein 41##NM_001171080|RBM41|55285|RNA binding motif protein 41##NM_018301|RBM41|55285|RNA binding motif protein 41##NM_001204402|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_002764|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##D00860|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK307748|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK312706|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK316467|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK297968|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC001605|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##X15331|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK223169|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##DQ895833|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##EU176362|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC018148|TSC22D3|1831|TSC22 domain family, member 3##Z50781|TSC22D3|1831|TSC22 domain family, member 3##NM_001015881|TSC22D3|1831|TSC22 domain family, member 3	1.933041	0.0	denovo_WM_7:38:0.530	denovo_WM_7:39:0.319	denovo_WM_7:53:0.477	denovo_WM_7:54:0.322
chrX	37722275	37722341	reg1017488.p1	4.140	+	BC000968 TSC_hg19_v1_chrX_-_37706825 AK311851 U02556 NM_006520	-15456	-	CR450320 CR542213 TSC_hg19_v1_chrX_-_37706781 GQ129368 GQ129369	-15532	-	TSC_hg19_v1_chrX_+_37639311 AK304033 AK301491 AK312929 AK301476 X04011 DQ890878 DQ894032	-82993	+	AF049615 NM_012274 BC104428 BC104429 BC113024 BC113025	127772	+	BX647688 NM_001163335 NM_138780 TSC_hg19_v1_chrX_+_37865853 AK125106	143542	+	NM_001163334	170478	+	BC000968|DYNLT3|6990|dynein, light chain, Tctex-type 3##AK311851|DYNLT3|6990|dynein, light chain, Tctex-type 3##U02556|DYNLT3|6990|dynein, light chain, Tctex-type 3##NM_006520|DYNLT3|6990|dynein, light chain, Tctex-type 3##CR450320|DYNLT3|6990|dynein, light chain, Tctex-type 3##CR542213|DYNLT3|6990|dynein, light chain, Tctex-type 3##GQ129368|DYNLT3|6990|dynein, light chain, Tctex-type 3##GQ129369|DYNLT3|6990|dynein, light chain, Tctex-type 3##AK304033|CYBB|1536|cytochrome b-245, beta polypeptide##AK301491|CYBB|1536|cytochrome b-245, beta polypeptide##AK312929|CYBB|1536|cytochrome b-245, beta polypeptide##AK301476|CYBB|1536|cytochrome b-245, beta polypeptide##X04011|CYBB|1536|cytochrome b-245, beta polypeptide##DQ890878|CYBB|1536|cytochrome b-245, beta polypeptide##DQ894032|CYBB|1536|cytochrome b-245, beta polypeptide##AF049615|CXorf27|25763|chromosome X open reading frame 27##NM_012274|CXorf27|25763|chromosome X open reading frame 27##BC104428|CXorf27|25763|chromosome X open reading frame 27##BC104429|CXorf27|25763|chromosome X open reading frame 27##BC113024|CXorf27|25763|chromosome X open reading frame 27##BC113025|CXorf27|25763|chromosome X open reading frame 27##BX647688|SYTL5|94122|synaptotagmin-like 5##NM_001163335|SYTL5|94122|synaptotagmin-like 5##NM_138780|SYTL5|94122|synaptotagmin-like 5##AK125106|SYTL5|94122|synaptotagmin-like 5##NM_001163334|SYTL5|94122|synaptotagmin-like 5	0.0	0.0	
chr15	44042440	44042542	reg1000160.p2	4.139	+	TSC_hg19_v1_chr15_+_44038685 U42068 D16234 D83485 AB527303 CU690254 DQ893070 DQ896325	-3709	+	TSC_hg19_v1_chr15_+_44038656 AK075455	-3838	+	TSC_hg19_v1_chr15_+_44038635 NM_005313 AK075481 AK293249 BC036000 Z49835 BC071878 BC014433	-3926	+	TSC_hg19_v1_chr15_+_44069338 NM_001199877 BC009869	26814	+	NM_025165	27010	-	BC008214 NM_001018108 NM_001199875 NM_001199876 TSC_hg19_v1_chr15_+_44084335	41728	+	U42068|PDIA3|2923|protein disulfide isomerase family A, member 3##D16234|PDIA3|2923|protein disulfide isomerase family A, member 3##D83485|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ893070|PDIA3|2923|protein disulfide isomerase family A, member 3##DQ896325|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075455|PDIA3|2923|protein disulfide isomerase family A, member 3##NM_005313|PDIA3|2923|protein disulfide isomerase family A, member 3##AK075481|PDIA3|2923|protein disulfide isomerase family A, member 3##AK293249|PDIA3|2923|protein disulfide isomerase family A, member 3##BC036000|PDIA3|2923|protein disulfide isomerase family A, member 3##Z49835|PDIA3|2923|protein disulfide isomerase family A, member 3##BC071878|PDIA3|2923|protein disulfide isomerase family A, member 3##BC014433|PDIA3|2923|protein disulfide isomerase family A, member 3##NM_001199877|SERF2|10169|small EDRK-rich factor 2##BC009869|SERF2|10169|small EDRK-rich factor 2##NM_025165|ELL3|80237|elongation factor RNA polymerase II-like 3##BC008214|SERF2|10169|small EDRK-rich factor 2##NM_001018108|SERF2|10169|small EDRK-rich factor 2##NM_001199875|SERF2|10169|small EDRK-rich factor 2##NM_001199876|SERF2|10169|small EDRK-rich factor 2	0.235711	0.0	
chr20	47443344	47443524	reg1015616.p2	4.139	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1028116	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-1028682	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-1312750	+	AB037836 TSC_hg19_v1_chr20_-_47444291	852	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	1005	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	94884	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.0	0.0	
chr22	32813148	32813262	reg1010717.p1	4.139	+	TSC_hg19_v1_chr22_-_32808253 AK301945 NM_014306	-4947	-	AK297826 AK297908 BC016707 TSC_hg19_v1_chr22_-_32808235 AK312503 AF161466	-4969	-	CR457175 CU677691 CU678324 AB527121 CU013001 CU013289 DQ890931 DQ894092 CR456450 BC000151 BC002970 AL050255 TSC_hg19_v1_chr22_-_32808224 BC010308 AF155658	-5020	-	AF465766 BC131582 NM_174932	40167	-	TSC_hg19_v1_chr22_+_32870699 NM_012179 BC008361	57499	+	TSC_hg19_v1_chr22_+_32870797 AL050254 AK226087	57567	+	AK301945|C22orf28|51493|chromosome 22 open reading frame 28##NM_014306|C22orf28|51493|chromosome 22 open reading frame 28##AK297826|C22orf28|51493|chromosome 22 open reading frame 28##AK297908|C22orf28|51493|chromosome 22 open reading frame 28##BC016707|C22orf28|51493|chromosome 22 open reading frame 28##AK312503|C22orf28|51493|chromosome 22 open reading frame 28##AF161466|C22orf28|51493|chromosome 22 open reading frame 28##CR457175|C22orf28|51493|chromosome 22 open reading frame 28##DQ890931|C22orf28|51493|chromosome 22 open reading frame 28##DQ894092|C22orf28|51493|chromosome 22 open reading frame 28##CR456450|C22orf28|51493|chromosome 22 open reading frame 28##BC000151|C22orf28|51493|chromosome 22 open reading frame 28##BC002970|C22orf28|51493|chromosome 22 open reading frame 28##AL050255|C22orf28|51493|chromosome 22 open reading frame 28##BC010308|C22orf28|51493|chromosome 22 open reading frame 28##AF155658|C22orf28|51493|chromosome 22 open reading frame 28##AF465766|BPIFC|254240|BPI fold containing family C##BC131582|BPIFC|254240|BPI fold containing family C##NM_174932|BPIFC|254240|BPI fold containing family C##NM_012179|FBXO7|25793|F-box protein 7##BC008361|FBXO7|25793|F-box protein 7##AL050254|FBXO7|25793|F-box protein 7##AK226087|FBXO7|25793|F-box protein 7	0.998877	0.0	denovo_WM_7:-18:0.314	denovo_WM_7:-19:0.314	denovo_WM_7:-20:0.314
chr7	75505213	75505294	reg1016966.p1	4.139	+	AJ223461 BC069072 BC069391 NM_002991 U85768 AB590965 CU686790	-62224	-	NM_006072 AY358893	-86115	-	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	-136943	-	AF226732 TSC_hg19_v1_chr7_+_75508369 NM_001040456 NM_001040457 BC069017 AK026590	3081	+	NM_000941 AK290529 TSC_hg19_v1_chr7_+_75544442	39188	+	BX648619 TSC_hg19_v1_chr7_+_75544474 AK129978 AK312543	39222	+	AJ223461|CCL24|6369|chemokine (C-C motif) ligand 24##BC069072|CCL24|6369|chemokine (C-C motif) ligand 24##BC069391|CCL24|6369|chemokine (C-C motif) ligand 24##NM_002991|CCL24|6369|chemokine (C-C motif) ligand 24##U85768|CCL24|6369|chemokine (C-C motif) ligand 24##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26##AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##AF226732|RHBDD2|57414|rhomboid domain containing 2##NM_001040456|RHBDD2|57414|rhomboid domain containing 2##NM_001040457|RHBDD2|57414|rhomboid domain containing 2##BC069017|RHBDD2|57414|rhomboid domain containing 2##AK026590|RHBDD2|57414|rhomboid domain containing 2##NM_000941|POR|5447|P450 (cytochrome) oxidoreductase##AK290529|POR|5447|P450 (cytochrome) oxidoreductase##BX648619|POR|5447|P450 (cytochrome) oxidoreductase##AK129978|POR|5447|P450 (cytochrome) oxidoreductase##AK312543|POR|5447|P450 (cytochrome) oxidoreductase	0.998858	0.0	denovo_WM_7:16:0.314	denovo_WM_7:17:0.314	denovo_WM_7:18:0.314
chr1	171576232	171576329	reg1007708.p2	4.138	+	AF253978 AL096857 TSC_hg19_v1_chr1_+_171481269 AF488829	-95028	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	-121586	+	BC002780 NM_002022 Z11737	-292852	+	AB528547 DQ892415 DQ895629 AF001620 FJ227302 FJ237046 FJ237047 NM_000261 U85257 D88214 BC029261 AK300924 AK300943 AK301297 AK315443 AK097310	45520	-	BC005974 TSC_hg19_v1_chr1_-_171711206 AL035296 AK290441 AF044310 BC031264 BC007019 NM_001185127 NM_003762	134955	-	AK092254 TSC_hg19_v1_chr1_+_171711293	135007	+	AF253978|PRRC2C|23215|proline-rich coiled-coil 2C##AL096857|PRRC2C|23215|proline-rich coiled-coil 2C##AF488829|PRRC2C|23215|proline-rich coiled-coil 2C##BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##DQ892415|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##DQ895629|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AF001620|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ227302|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237046|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##FJ237047|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##NM_000261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##U85257|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##D88214|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC029261|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300924|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK300943|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK301297|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK315443|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##AK097310|MYOC|4653|myocilin, trabecular meshwork inducible glucocorticoid response##BC005974|VAMP4|8674|vesicle-associated membrane protein 4##AL035296|VAMP4|8674|vesicle-associated membrane protein 4##AK290441|VAMP4|8674|vesicle-associated membrane protein 4##AF044310|VAMP4|8674|vesicle-associated membrane protein 4##BC031264|VAMP4|8674|vesicle-associated membrane protein 4##BC007019|VAMP4|8674|vesicle-associated membrane protein 4##NM_001185127|VAMP4|8674|vesicle-associated membrane protein 4##NM_003762|VAMP4|8674|vesicle-associated membrane protein 4	0.999587	0.0	
chr1	24091589	24091706	reg1009996.p1	4.138	+	L47345 TSC_hg19_v1_chr1_+_24069969 BC002883 AK313079 AB527691 DQ893026 DQ896270 AF116729	-21664	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	-21743	+	TSC_hg19_v1_chr1_+_24018295 BC018970	-73348	+	TSC_hg19_v1_chr1_-_24104774 AK055276 AL049675	13122	-	TSC_hg19_v1_chr1_+_24104875 NM_020362 AF221595 AF271784 AF218024	13226	+	AK296662 TSC_hg19_v1_chr1_+_24104906	13259	+	L47345|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC002883|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK313079|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ893026|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##DQ896270|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AF116729|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##BC018970|RPL11|6135|ribosomal protein L11##AL049675|LOC100506963|100506963|uncharacterized LOC100506963##NM_020362|PITHD1|57095|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1##AF221595|PITHD1|57095|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1##AF271784|PITHD1|57095|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1##AF218024|PITHD1|57095|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1##AK296662|PITHD1|57095|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	2.985441	0.0	denovo_WM_7:57:0.724	denovo_WM_7:58:0.242	denovo_WM_7:72:0.493	denovo_WM_7:73:0.488	denovo_WM_7:87:0.251	denovo_WM_7:88:0.738
chr12	51789046	51789190	reg1011764.p1	4.138	+	TSC_hg19_v1_chr12_+_51785519 AK128321	-3597	+	TSC_hg19_v1_chr12_-_51785431 AK296852	-3685	-	BC035822 NM_007210	-3923	-	AK299545 TSC_hg19_v1_chr12_+_51818596 NM_001039960 NM_004858 DQ063579	29480	+	TSC_hg19_v1_chr12_+_51818698 BC025994 AF069512 AF107099 CU693092 AL831915	29666	+	TSC_hg19_v1_chr12_+_51985016 AB027567 NM_014191	195899	+	AK128321|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AK296852|GALNT6|11226|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)##BC035822|GALNT6|11226|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)##NM_007210|GALNT6|11226|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)##AK299545|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##NM_001039960|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##NM_004858|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##DQ063579|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##BC025994|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AF069512|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AF107099|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AL831915|SLC4A8|9498|solute carrier family 4, sodium bicarbonate cotransporter, member 8##AB027567|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit##NM_014191|SCN8A|6334|sodium channel, voltage gated, type VIII, alpha subunit	1.018966	0.0	denovo_WM_7:9:0.210	denovo_WM_7:10:0.311
chr13	80922275	80922455	reg1001922.p2	4.138	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-7301	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-9323	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-866810	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3534060	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3534135	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5451074	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	2.447933	0.0	denovo_WM_7:47:0.450	denovo_WM_7:48:0.450	denovo_WM_7:69:0.859	denovo_WM_7:106:0.441
chr14	71132250	71132430	reg1011801.p1	4.138	+	TSC_hg19_v1_chr14_+_71108629 D86980 NM_015351 BC047950 AB464295	-23731	+	AK223346 AK290647 AK300417 AK300460 AK304361 TSC_hg19_v1_chr14_-_71067373 AF074723 BC004106 AK222587 NM_005466	-64963	-	AB463868 BT006831 CR541697 TSC_hg19_v1_chr14_-_71067367	-64980	-	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	143469	-	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	241793	+	TSC_hg19_v1_chr14_+_71374441 BC140784	242111	+	D86980|TTC9|23508|tetratricopeptide repeat domain 9##NM_015351|TTC9|23508|tetratricopeptide repeat domain 9##BC047950|TTC9|23508|tetratricopeptide repeat domain 9##AK223346|MED6|10001|mediator complex subunit 6##AK290647|MED6|10001|mediator complex subunit 6##AK300417|MED6|10001|mediator complex subunit 6##AK300460|MED6|10001|mediator complex subunit 6##AK304361|MED6|10001|mediator complex subunit 6##AF074723|MED6|10001|mediator complex subunit 6##BC004106|MED6|10001|mediator complex subunit 6##AK222587|MED6|10001|mediator complex subunit 6##NM_005466|MED6|10001|mediator complex subunit 6##BT006831|MED6|10001|mediator complex subunit 6##CR541697|MED6|10001|mediator complex subunit 6##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##BC140784|PCNX|22990|pecanex homolog (Drosophila)	0.0	0.0	
chr14	91800047	91800227	reg1015410.p2	4.138	+	BC098567 NM_003485	-79943	-	BC128536 NM_001177676	-89286	-	TSC_hg19_v1_chr14_+_91581017 NM_001102367 BX248060 BC010614 AY358516	-219110	+	TSC_hg19_v1_chr14_-_91884159 AF070587	84011	-	TSC_hg19_v1_chr14_-_91884165 NM_001080414	84038	-	BC072409 AB095930 TSC_hg19_v1_chr14_-_91976621	176363	-	BC098567|GPR68|8111|G protein-coupled receptor 68##NM_003485|GPR68|8111|G protein-coupled receptor 68##BC128536|GPR68|8111|G protein-coupled receptor 68##NM_001177676|GPR68|8111|G protein-coupled receptor 68##NM_001102367|C14orf159|80017|chromosome 14 open reading frame 159##BX248060|C14orf159|80017|chromosome 14 open reading frame 159##BC010614|C14orf159|80017|chromosome 14 open reading frame 159##AY358516|C14orf159|80017|chromosome 14 open reading frame 159##AF070587|CCDC88C|440193|coiled-coil domain containing 88C##NM_001080414|CCDC88C|440193|coiled-coil domain containing 88C##BC072409|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)##AB095930|SMEK1|55671|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	0.0	0.0	
chr15	48617779	48617885	reg1007107.p2	4.138	+	NM_000338 NM_001184832 AK129998 AK298312 BC020860	-119335	+	BX537772 NM_001145668 AK295375	-133919	+	TSC_hg19_v1_chr15_-_48470503 AB037762 BC152420 BC152451 BC068523 AK023133 NM_016132	-147315	-	TSC_hg19_v1_chr15_+_48623625 NM_001025248 NM_001025249 AK000629 BC070339 BC110377 AK298464 U90223 AB528727	5832	+	TSC_hg19_v1_chr15_+_48624363 AK291515 NM_001948 AK312122 U31930 U62891 L11877 AB049113 M89913 DQ891191 DQ894375 CR541720 CR541781	6569	+	TSC_hg19_v1_chr15_-_48937070 L13923	319251	-	NM_000338|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##NM_001184832|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK129998|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK298312|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##BX537772|CTXN2|399697|cortexin 2##NM_001145668|CTXN2|399697|cortexin 2##AK295375|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AB037762|MYEF2|50804|myelin expression factor 2##BC152420|MYEF2|50804|myelin expression factor 2##BC152451|MYEF2|50804|myelin expression factor 2##BC068523|MYEF2|50804|myelin expression factor 2##AK023133|MYEF2|50804|myelin expression factor 2##NM_016132|MYEF2|50804|myelin expression factor 2##NM_001025248|DUT|1854|deoxyuridine triphosphatase##NM_001025249|DUT|1854|deoxyuridine triphosphatase##AK000629|DUT|1854|deoxyuridine triphosphatase##BC070339|DUT|1854|deoxyuridine triphosphatase##BC110377|DUT|1854|deoxyuridine triphosphatase##AK298464|DUT|1854|deoxyuridine triphosphatase##U90223|DUT|1854|deoxyuridine triphosphatase##AK291515|DUT|1854|deoxyuridine triphosphatase##NM_001948|DUT|1854|deoxyuridine triphosphatase##AK312122|DUT|1854|deoxyuridine triphosphatase##U31930|DUT|1854|deoxyuridine triphosphatase##U62891|DUT|1854|deoxyuridine triphosphatase##L11877|DUT|1854|deoxyuridine triphosphatase##AB049113|DUT|1854|deoxyuridine triphosphatase##M89913|DUT|1854|deoxyuridine triphosphatase##DQ891191|DUT|1854|deoxyuridine triphosphatase##DQ894375|DUT|1854|deoxyuridine triphosphatase##CR541720|DUT|1854|deoxyuridine triphosphatase##CR541781|DUT|1854|deoxyuridine triphosphatase##L13923|FBN1|2200|fibrillin 1	0.0	0.0	
chr2	7139396	7139576	reg1003075.p2	4.138	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-81899	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-121623	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-132783	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1682717	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1838233	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	2004335	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.0	0.0	
chr5	180287463	180287625	reg1001394.p1	4.138	+	TSC_hg19_v1_chr5_+_180258018 BC047586	-29539	+	TSC_hg19_v1_chr5_+_180257959 AK308536	-29592	+	AK057194 AK124428 TSC_hg19_v1_chr5_-_180242542	-45002	-	AK295714 TSC_hg19_v1_chr5_-_180288277 AK303450 BC029573 AK091376 AX746945 NM_001172638 NM_152283	747	-	NM_001040462 NM_001159707 NM_001159708 NM_001159709 NM_024850 AK296597 AY358523 AK025111 AK225213 BC119696 BC119697	38630	+	AK298687 NM_001159710 AK309639 AK308012	49026	+	BC047586|LOC729678|729678|uncharacterized LOC729678##AK057194|MGAT1|4245|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK295714|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK303450|ZFP62|643836|zinc finger protein 62 homolog (mouse)##BC029573|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK091376|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001172638|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_152283|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001040462|BTNL8|79908|butyrophilin-like 8##NM_001159707|BTNL8|79908|butyrophilin-like 8##NM_001159708|BTNL8|79908|butyrophilin-like 8##NM_001159709|BTNL8|79908|butyrophilin-like 8##NM_024850|BTNL8|79908|butyrophilin-like 8##AK296597|BTNL8|79908|butyrophilin-like 8##AY358523|BTNL8|79908|butyrophilin-like 8##AK025111|BTNL8|79908|butyrophilin-like 8##AK225213|BTNL8|79908|butyrophilin-like 8##BC119696|BTNL8|79908|butyrophilin-like 8##BC119697|BTNL8|79908|butyrophilin-like 8##AK298687|BTNL8|79908|butyrophilin-like 8##NM_001159710|BTNL8|79908|butyrophilin-like 8##AK309639|BTNL8|79908|butyrophilin-like 8##AK308012|BTNL8|79908|butyrophilin-like 8	0.0	0.0	
chr6	43630031	43630110	reg1015018.p2	4.138	+	NM_001193341 NM_152732 AK291399 BC029519 AK055407	-17274	+	TSC_hg19_v1_chr6_+_43603603 BC002904 D14811 AB384438 CR456893 CU678282	-26470	+	TSC_hg19_v1_chr6_+_43603585 AK297172 NM_014628	-26501	+	TSC_hg19_v1_chr6_-_43655521 CU679679 DQ884400 AK300757 BC010364 AK307183 AB049952	25449	-	TSC_hg19_v1_chr6_-_43655539 NM_001193343 NM_018135	25478	-	TSC_hg19_v1_chr6_+_43737947 NM_001025366 NM_001025367 NM_001025368 NM_001025369 NM_001025370 NM_001033756 NM_001171622 NM_001171623 NM_001171624 NM_001171625 NM_001171626 NM_001171627 NM_001171628 NM_001171629 NM_001171630 NM_001204384 NM_001204385 NM_003376 BC058855 BC019867	107948	+	NM_001193341|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##NM_152732|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##AK291399|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##BC029519|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##AK055407|RSPH9|221421|radial spoke head 9 homolog (Chlamydomonas)##BC002904|MAD2L1BP|9587|MAD2L1 binding protein##D14811|MAD2L1BP|9587|MAD2L1 binding protein##CR456893|MAD2L1BP|9587|MAD2L1 binding protein##AK297172|MAD2L1BP|9587|MAD2L1 binding protein##NM_014628|MAD2L1BP|9587|MAD2L1 binding protein##DQ884400|MRPS18A|55168|mitochondrial ribosomal protein S18A##AK300757|MRPS18A|55168|mitochondrial ribosomal protein S18A##BC010364|MRPS18A|55168|mitochondrial ribosomal protein S18A##AK307183|MRPS18A|55168|mitochondrial ribosomal protein S18A##AB049952|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_001193343|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_018135|MRPS18A|55168|mitochondrial ribosomal protein S18A##NM_001025366|VEGFA|7422|vascular endothelial growth factor A##NM_001025367|VEGFA|7422|vascular endothelial growth factor A##NM_001025368|VEGFA|7422|vascular endothelial growth factor A##NM_001025369|VEGFA|7422|vascular endothelial growth factor A##NM_001025370|VEGFA|7422|vascular endothelial growth factor A##NM_001033756|VEGFA|7422|vascular endothelial growth factor A##NM_001171622|VEGFA|7422|vascular endothelial growth factor A##NM_001171623|VEGFA|7422|vascular endothelial growth factor A##NM_001171624|VEGFA|7422|vascular endothelial growth factor A##NM_001171625|VEGFA|7422|vascular endothelial growth factor A##NM_001171626|VEGFA|7422|vascular endothelial growth factor A##NM_001171627|VEGFA|7422|vascular endothelial growth factor A##NM_001171628|VEGFA|7422|vascular endothelial growth factor A##NM_001171629|VEGFA|7422|vascular endothelial growth factor A##NM_001171630|VEGFA|7422|vascular endothelial growth factor A##NM_001204384|VEGFA|7422|vascular endothelial growth factor A##NM_001204385|VEGFA|7422|vascular endothelial growth factor A##NM_003376|VEGFA|7422|vascular endothelial growth factor A##BC058855|VEGFA|7422|vascular endothelial growth factor A##BC019867|VEGFA|7422|vascular endothelial growth factor A	0.981063	0.0	denovo_WM_7:44:0.778
chr8	119049551	119049643	reg1013151.p1	4.138	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-516555	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-516639	+	NM_001172814 NM_173851	-902261	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	74364	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	584528	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	584610	-	BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12	0.995629	0.0	denovo_WM_7:29:0.456	denovo_WM_7:30:0.456
chrX	78055521	78055652	reg1013248.p2	4.138	+	NM_005296 AK314134	-52378	+	AK096184 NM_152694	-140762	-	BC035750 DQ131801 DQ131800 AK023929 DQ131802 NM_006639 AK313643 DQ131799	-472503	-	NM_014499 NM_198333 AK313218 AK292138 BC051875	145286	+	AF345567 BC104922 BC104924 NM_032553	370882	+	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	567197	-	NM_005296|LPAR4|2846|lysophosphatidic acid receptor 4##AK314134|LPAR4|2846|lysophosphatidic acid receptor 4##AK096184|ZCCHC5|203430|zinc finger, CCHC domain containing 5##NM_152694|ZCCHC5|203430|zinc finger, CCHC domain containing 5##BC035750|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131801|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131800|CYSLTR1|10800|cysteinyl leukotriene receptor 1##AK023929|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131802|CYSLTR1|10800|cysteinyl leukotriene receptor 1##NM_006639|CYSLTR1|10800|cysteinyl leukotriene receptor 1##AK313643|CYSLTR1|10800|cysteinyl leukotriene receptor 1##DQ131799|CYSLTR1|10800|cysteinyl leukotriene receptor 1##NM_014499|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_198333|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK313218|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK292138|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##BC051875|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A	0.030309	0.0	
chr16	82465852	82465965	reg1006014.p1	4.137	+	CU689076 AB463897 TSC_hg19_v1_chr16_-_82203821 BC005242 BC031017 BC011020 BC029395 X98263 AK222667 AK314163 NM_005792	-262098	-	TSC_hg19_v1_chr16_+_82068989 DQ893100 DQ896372	-396915	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	-396976	+	TSC_hg19_v1_chr16_+_82660390 NM_001220488 NM_001220489 NM_001220490 NM_001220491 NM_001220492 NM_001257	194486	+	AK304592 TSC_hg19_v1_chr16_+_82660573 AK295886 AK298612 AK307862 EU190357 EU190358 BC028624 BC030653	194681	+	TSC_hg19_v1_chr16_+_82660641 AK304733 BC012615 AB384879 CU688968 DQ891713 DQ894890	194761	+	BC005242|MPHOSPH6|10200|M-phase phosphoprotein 6##BC031017|MPHOSPH6|10200|M-phase phosphoprotein 6##BC011020|MPHOSPH6|10200|M-phase phosphoprotein 6##BC029395|MPHOSPH6|10200|M-phase phosphoprotein 6##X98263|MPHOSPH6|10200|M-phase phosphoprotein 6##AK222667|MPHOSPH6|10200|M-phase phosphoprotein 6##AK314163|MPHOSPH6|10200|M-phase phosphoprotein 6##NM_005792|MPHOSPH6|10200|M-phase phosphoprotein 6##DQ893100|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##DQ896372|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##NM_001220488|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220489|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220490|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220491|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001220492|CDH13|1012|cadherin 13, H-cadherin (heart)##NM_001257|CDH13|1012|cadherin 13, H-cadherin (heart)##AK304592|CDH13|1012|cadherin 13, H-cadherin (heart)##AK295886|CDH13|1012|cadherin 13, H-cadherin (heart)##AK298612|CDH13|1012|cadherin 13, H-cadherin (heart)##AK307862|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190357|CDH13|1012|cadherin 13, H-cadherin (heart)##EU190358|CDH13|1012|cadherin 13, H-cadherin (heart)##BC028624|CDH13|1012|cadherin 13, H-cadherin (heart)##BC030653|CDH13|1012|cadherin 13, H-cadherin (heart)##AK304733|CDH13|1012|cadherin 13, H-cadherin (heart)##BC012615|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ891713|CDH13|1012|cadherin 13, H-cadherin (heart)##DQ894890|CDH13|1012|cadherin 13, H-cadherin (heart)	1.366228	0.0	denovo_WM_7:48:0.338
chr17	38388476	38388542	reg1011907.p2	4.137	+	TSC_hg19_v1_chr17_+_38375614 AK289779 AK311544 AL834239 NM_133264 BC025965 AK315836 AK055057 AK290301 BC065551 AF370396	-12895	+	NM_016339	-54268	+	TSC_hg19_v1_chr17_+_38296796 CU690706	-91713	+	AK313620 TSC_hg19_v1_chr17_+_38444130	55621	+	TSC_hg19_v1_chr17_+_38444134 NM_001254 U77949	55631	+	TSC_hg19_v1_chr17_+_38444176 BC025232 AF022109	55705	+	AK289779|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK311544|WIPF2|147179|WAS/WASL interacting protein family, member 2##AL834239|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_133264|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC025965|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK315836|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK055057|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK290301|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC065551|WIPF2|147179|WAS/WASL interacting protein family, member 2##AF370396|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_016339|RAPGEFL1|51195|Rap guanine nucleotide exchange factor (GEF)-like 1##AK313620|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##NM_001254|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##U77949|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##BC025232|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##AF022109|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)	1.696017	0.0	denovo_WM_7:-54:0.516	denovo_WM_7:-69:0.527
chr19	42463802	42463916	reg1009612.p2	4.137	+	TSC_hg19_v1_chr19_-_42463500 NM_006423	-339	-	AF112996 BT019964 CR457214 CR542116 AB590878 AF112202 AJ133534 BC008950 TSC_hg19_v1_chr19_-_42463499	-391	-	NM_199002 TSC_hg19_v1_chr19_+_42388510 BC034013 BC067262	-75373	+	AK295833 TSC_hg19_v1_chr19_-_42498254	34378	-	TSC_hg19_v1_chr19_-_42498383 BC009282 BC009394 BC015566 BC013763 AK307921 AK316069 AK223569 AK293784 AK295078 NM_152296	34513	-	S40369 AJ249209 BC131717 NM_002088	106079	-	NM_006423|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112996|RABAC1|10567|Rab acceptor 1 (prenylated)##BT019964|RABAC1|10567|Rab acceptor 1 (prenylated)##CR457214|RABAC1|10567|Rab acceptor 1 (prenylated)##CR542116|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112202|RABAC1|10567|Rab acceptor 1 (prenylated)##AJ133534|RABAC1|10567|Rab acceptor 1 (prenylated)##BC008950|RABAC1|10567|Rab acceptor 1 (prenylated)##NM_199002|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC034013|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC067262|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##AK295833|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC009282|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC009394|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC015566|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC013763|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK307921|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK316069|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK223569|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK293784|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK295078|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##NM_152296|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##S40369|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##AJ249209|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC131717|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##NM_002088|GRIK5|2901|glutamate receptor, ionotropic, kainate 5	0.0	0.068755	
chr20	52532625	52532730	reg1001456.p2	4.137	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-321878	-	AF041259 NM_006526	-333042	-	AK302570 NM_001193421	-730856	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	154385	-	AK315220 NM_003657	154626	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	257843	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.681417	0.0	denovo_WM_7:26:0.609
chr3	81865809	81865902	reg1012417.p1	4.137	+	TSC_hg19_v1_chr3_-_81810971 NM_000158	-54913	-	TSC_hg19_v1_chr3_-_81810866 AB209731 BC012098	-55007	-	TSC_hg19_v1_chr3_-_81810802 AK297939	-55050	-	BC031255 TSC_hg19_v1_chr3_+_82035308	169447	+	TSC_hg19_v1_chr3_+_85008139 AB646739 BC105999 NM_001167674 NM_001167675 AK295885 BC063484 AL834270	3142274	+	AF538973 NM_153184	3909776	+	NM_000158|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB209731|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##BC012098|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK297939|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB646739|CADM2|253559|cell adhesion molecule 2##BC105999|CADM2|253559|cell adhesion molecule 2##NM_001167674|CADM2|253559|cell adhesion molecule 2##NM_001167675|CADM2|253559|cell adhesion molecule 2##AK295885|CADM2|253559|cell adhesion molecule 2##AL834270|CADM2|253559|cell adhesion molecule 2##AF538973|CADM2|253559|cell adhesion molecule 2##NM_153184|CADM2|253559|cell adhesion molecule 2	0.995006	0.0	denovo_WM_7:9:0.210	denovo_WM_7:14:0.481
chr12	133276628	133276700	reg1007011.p1	4.136	+	TSC_hg19_v1_chr12_+_133264236 AF250136 NM_018663 BC073997 AY044439	-12460	+	TSC_hg19_v1_chr12_-_133264011 AF128542	-12643	-	TSC_hg19_v1_chr12_-_133263981 U49356 S60080 BC144561 L09561 NM_006231	-12724	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	10772	+	AK025933 TSC_hg19_v1_chr12_-_133306584	29894	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	61756	-	AF250136|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##NM_018663|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##BC073997|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AY044439|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AF128542|POLE|5426|polymerase (DNA directed), epsilon##U49356|POLE|5426|polymerase (DNA directed), epsilon##S60080|POLE|5426|polymerase (DNA directed), epsilon##BC144561|POLE|5426|polymerase (DNA directed), epsilon##L09561|POLE|5426|polymerase (DNA directed), epsilon##NM_006231|POLE|5426|polymerase (DNA directed), epsilon##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2	0.997023	0.0	denovo_WM_7:-25:0.313	denovo_WM_7:-26:0.313	denovo_WM_7:-27:0.313
chr18	24130419	24130516	reg1012074.p2	4.136	+	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	-1226	-	NM_001142730 TSC_hg19_v1_chr18_-_24128518	-1957	-	TSC_hg19_v1_chr18_+_23806444 NM_005640 AB234096	-324050	+	AF542549 NM_198991	89840	-	U63623 NM_004028	312087	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	315249	-	AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_005640|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AB234096|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1##U63623|AQP4|361|aquaporin 4##NM_004028|AQP4|361|aquaporin 4##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4	0.0	0.0	
chr21	42733750	42733930	reg1001432.p1	4.136	+	AK125528 NM_058186 NM_206964 TSC_hg19_v1_chr21_+_42688738 BC057829 AF375989 AJ409094 AY040086 AY358459 HQ257913 AF494379	-45107	+	AK302095 BC036314 TSC_hg19_v1_chr21_+_42676236	-57634	+	AK092431 AX747543 NM_182832	-176675	-	TSC_hg19_v1_chr21_+_42733956 M30818 NM_002463 AK308060 AK126107	98	+	TSC_hg19_v1_chr21_+_42742025 AK298780	8179	+	AK096355 NM_001144925	58640	+	AK125528|FAM3B|54097|family with sequence similarity 3, member B##NM_058186|FAM3B|54097|family with sequence similarity 3, member B##NM_206964|FAM3B|54097|family with sequence similarity 3, member B##BC057829|FAM3B|54097|family with sequence similarity 3, member B##AF375989|FAM3B|54097|family with sequence similarity 3, member B##AJ409094|FAM3B|54097|family with sequence similarity 3, member B##AY040086|FAM3B|54097|family with sequence similarity 3, member B##AY358459|FAM3B|54097|family with sequence similarity 3, member B##HQ257913|FAM3B|54097|family with sequence similarity 3, member B##AF494379|FAM3B|54097|family with sequence similarity 3, member B##BC036314|FAM3B|54097|family with sequence similarity 3, member B##AK092431|PLAC4|191585|placenta-specific 4##NM_182832|PLAC4|191585|placenta-specific 4##M30818|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##NM_002463|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK308060|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK126107|LOC100131190|100131190|uncharacterized LOC100131190##AK298780|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK096355|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_001144925|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)	0.0	0.0	
chr2	39721938	39722074	reg1014091.p2	4.136	+	TSC_hg19_v1_chr2_+_39664565 AK095178	-57436	+	TSC_hg19_v1_chr2_-_39664438 BC071579	-57538	-	TSC_hg19_v1_chr2_-_39664420 AK291467	-57620	-	NM_001167959	170631	+	TSC_hg19_v1_chr2_+_39893056 NM_152390 AK075440 BC029530 AY358773 DQ890996	171061	+	TSC_hg19_v1_chr2_-_40006399 CU678598 EU831465 EU831552 AK301353 AK298178 AK226034 BC004163 BC013299 AK307754 AL832115 AK093580 AX748213 AK292002	284288	-	AK095178|LOC728730|728730|uncharacterized LOC728730##BC071579|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##AK291467|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##NM_001167959|TMEM178|130733|transmembrane protein 178##NM_152390|TMEM178|130733|transmembrane protein 178##AK075440|TMEM178|130733|transmembrane protein 178##BC029530|TMEM178|130733|transmembrane protein 178##AY358773|TMEM178|130733|transmembrane protein 178##DQ890996|TMEM178|130733|transmembrane protein 178##EU831465|THUMPD2|80745|THUMP domain containing 2##EU831552|THUMPD2|80745|THUMP domain containing 2##AK301353|THUMPD2|80745|THUMP domain containing 2##AK298178|THUMPD2|80745|THUMP domain containing 2##AK226034|THUMPD2|80745|THUMP domain containing 2##BC004163|THUMPD2|80745|THUMP domain containing 2##BC013299|THUMPD2|80745|THUMP domain containing 2##AK307754|THUMPD2|80745|THUMP domain containing 2##AL832115|THUMPD2|80745|THUMP domain containing 2##AK093580|THUMPD2|80745|THUMP domain containing 2##AK292002|THUMPD2|80745|THUMP domain containing 2	1.46165	0.0	denovo_WM_7:-74:0.363	denovo_WM_7:-88:0.225	denovo_WM_7:-89:0.586
chr2	74210697	74210766	reg1011959.p2	4.136	+	TSC_hg19_v1_chr2_+_74154019 X97386	-56685	+	TSC_hg19_v1_chr2_+_74154006 BC024019 U41668 BC001121 BC015757	-56731	+	TSC_hg19_v1_chr2_+_74153968 NM_080916 NM_080918	-56781	+	NM_144993	62718	+	BC028282 DQ225187 TSC_hg19_v1_chr2_-_74375022 BC046531 BC042036 NM_001035505 NM_212552	164287	-	BC030102 AK123453 BC008757 TSC_hg19_v1_chr2_+_74375241 BC007916 BC015635	164489	+	X97386|DGUOK|1716|deoxyguanosine kinase##BC024019|DGUOK|1716|deoxyguanosine kinase##U41668|DGUOK|1716|deoxyguanosine kinase##BC001121|DGUOK|1716|deoxyguanosine kinase##BC015757|DGUOK|1716|deoxyguanosine kinase##NM_080916|DGUOK|1716|deoxyguanosine kinase##NM_080918|DGUOK|1716|deoxyguanosine kinase##NM_144993|TET3|200424|tet methylcytosine dioxygenase 3##BC028282|BOLA3|388962|bolA homolog 3 (E. coli)##DQ225187|BOLA3|388962|bolA homolog 3 (E. coli)##BC046531|BOLA3|388962|bolA homolog 3 (E. coli)##BC042036|BOLA3|388962|bolA homolog 3 (E. coli)##NM_001035505|BOLA3|388962|bolA homolog 3 (E. coli)##NM_212552|BOLA3|388962|bolA homolog 3 (E. coli)##BC030102|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##AK123453|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC008757|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC007916|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)##BC015635|BOLA3-AS1|100507171|BOLA3 antisense RNA 1 (non-protein coding)	0.904853	0.0	denovo_WM_7:53:0.782
chr4	161063845	161063977	reg1010556.p1	4.136	+	AK294459 NM_014247	-874914	+	AK058100 NM_152543	-1107579	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-1373626	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	2021240	-	TSC_hg19_v1_chr4_-_164088002 AK097352	3024081	-	TSC_hg19_v1_chr4_-_164088043 AK308601	3024126	-	AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)##AK308601|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.0	0.0	
chr7	2347599	2347779	reg1008623.p2	4.136	+	BC065367 AB025238 AB025239 AB025242 NM_198953 NM_198954 BC022818 BC040144 CU677071	-65156	+	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	-65814	+	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	-65856	-	TSC_hg19_v1_chr7_-_2354018 BC007785	6335	-	TSC_hg19_v1_chr7_-_2354077 CU692368 DQ892508 DQ895722 AK074544 AF121858 AK315670 BC021565 NM_013321	6385	-	TSC_hg19_v1_chr7_+_2394488 NM_001037283 NM_003751 AK302058	46773	+	BC065367|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025238|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025239|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025242|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198953|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198954|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC022818|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC040144|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC007785|SNX8|29886|sorting nexin 8##DQ892508|SNX8|29886|sorting nexin 8##DQ895722|SNX8|29886|sorting nexin 8##AK074544|SNX8|29886|sorting nexin 8##AF121858|SNX8|29886|sorting nexin 8##AK315670|SNX8|29886|sorting nexin 8##BC021565|SNX8|29886|sorting nexin 8##NM_013321|SNX8|29886|sorting nexin 8##NM_001037283|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##NM_003751|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK302058|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B	0.0	0.0	
chr10	74020922	74021102	reg1012338.p1	4.135	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-44901	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-45224	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-45248	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	12812	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	93666	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	93914	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	0.0	0.0	
chr1	12112045	12112188	reg1012017.p1	4.135	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-32546	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-32582	+	FJ618905 NM_021933	-32818	+	M83554 NM_001243 BC136400 BC171762 S75768	11428	+	D86042 BC063482 NM_152942 BC073839 BC141804	73900	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	114945	+	AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##FJ618905|MIIP|60672|migration and invasion inhibitory protein##NM_021933|MIIP|60672|migration and invasion inhibitory protein##M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.0	0.0	
chr12	10396244	10396424	reg1008968.p1	4.135	+	AF287012 TSC_hg19_v1_chr12_+_10365506 AF087847 AK303581 AK315418 AK074195 BC028315 NM_031412 BC009309 AL136676 BX648781 BC008891	-30858	+	NM_153022 AY358845 AK055728	-64741	+	AB102861 AB590414 CU692540 DQ891409 DQ894585 AF035776 AK292124 AK295409 AK298040 BC022295 BC055085 AB010710 AK308009 NM_001172632 NM_001172633 NM_002543	-71602	-	AK291506 AY227806 NM_001114396	60712	+	NM_002262 NM_007334 AF498040 AF498041 AY327501 U30610 BC028009 AB009597 AJ000001	64198	+	BC039836 AK226161 AK292059 NM_007360	146300	-	AF287012|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AF087847|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK303581|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK315418|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK074195|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC028315|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_031412|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC009309|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AL136676|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BX648781|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC008891|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_153022|C12orf59|120939|chromosome 12 open reading frame 59##AY358845|C12orf59|120939|chromosome 12 open reading frame 59##AK055728|C12orf59|120939|chromosome 12 open reading frame 59##AB102861|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##DQ891409|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##DQ894585|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AF035776|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK292124|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK295409|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK298040|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##BC022295|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##BC055085|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AB010710|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK308009|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_001172632|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_001172633|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_002543|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK291506|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY227806|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_001114396|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_002262|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_007334|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498040|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498041|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY327501|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##U30610|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC028009|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AB009597|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AJ000001|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC039836|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK226161|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292059|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##NM_007360|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1	0.0	0.0	
chr12	14518326	14518400	reg1020200.p1	4.135	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-385377	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-1168634	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-1168646	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	272	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	19909	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	202246	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.0	0.0	
chr16	10391764	10391905	reg1010973.p2	4.135	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-115157	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-115646	-	BC143273 U09002 NM_001134408	-116001	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	88083	+	NM_024997 BC137079 BC144468	130906	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	282656	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	0.996137	0.0	denovo_WM_7:92:0.553	denovo_WM_7:95:0.261
chr18	28039080	28039214	reg1016545.p2	4.135	+	TSC_hg19_v1_chr18_-_25757363 NM_001792	-2281750	-	TSC_hg19_v1_chr18_-_25757095 AB384981 EU832318 EU832403 X54315 BC036470	-2282110	-	AF239821 BC025764 TSC_hg19_v1_chr18_-_24765254 AY358488 NM_031422	-3273914	-	TSC_hg19_v1_chr18_-_28622624 X83929 D17427 AK291748 NM_001941 NM_024423	583555	-	CR749226 TSC_hg19_v1_chr18_-_28681542	642341	-	TSC_hg19_v1_chr18_-_28682275 EF017811 EF017812 X56807 AK297029 AK290313 BX648425 BC063291 NM_004949 NM_024422	643044	-	NM_001792|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832318|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832403|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X54315|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##BC036470|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##AF239821|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##BC025764|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AY358488|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_031422|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##X83929|DSC3|1825|desmocollin 3##D17427|DSC3|1825|desmocollin 3##AK291748|DSC3|1825|desmocollin 3##NM_001941|DSC3|1825|desmocollin 3##NM_024423|DSC3|1825|desmocollin 3##CR749226|DSC2|1824|desmocollin 2##EF017811|DSC2|1824|desmocollin 2##EF017812|DSC2|1824|desmocollin 2##X56807|DSC2|1824|desmocollin 2##AK297029|DSC2|1824|desmocollin 2##AK290313|DSC2|1824|desmocollin 2##BX648425|DSC2|1824|desmocollin 2##BC063291|DSC2|1824|desmocollin 2##NM_004949|DSC2|1824|desmocollin 2##NM_024422|DSC2|1824|desmocollin 2	0.994936	0.0	denovo_WM_7:-46:0.827
chr20	55963759	55963923	reg1004539.p1	4.135	+	NM_001190472	-28964	-	AK292247 AY349350 NM_001015885	-37240	+	TSC_hg19_v1_chr20_+_55926310 BC103754 AK309743 AK309069 U84720 BC106923 BC106924	-37519	+	TSC_hg19_v1_chr20_+_55966453 NM_017495 NM_183425 AF432218	2616	+	BC130486 AF336042 DQ778111 DQ778124 DQ778125 DQ778126 DQ778127 DQ778128 DQ778129 NM_080618 BC060763 AK313990 AK128070	136360	-	NM_002591 AK290802 TSC_hg19_v1_chr20_+_56136165 AK300072 BC023978 BX648510 L05144	172316	+	NM_001190472|MTRNR2L3|100462983|MT-RNR2-like 3##AK292247|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AY349350|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##NM_001015885|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC103754|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AK309743|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AK309069|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##U84720|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC106923|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC106924|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##NM_017495|RBM38|55544|RNA binding motif protein 38##NM_183425|RBM38|55544|RNA binding motif protein 38##AF432218|RBM38|55544|RNA binding motif protein 38##BC130486|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF336042|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778111|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778124|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778125|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778126|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778127|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778128|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778129|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_080618|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##BC060763|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK313990|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK128070|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_002591|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK290802|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK300072|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC023978|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BX648510|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##L05144|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)	0.99683	0.0	denovo_WM_7:-35:0.985
chr4	40228137	40228267	reg1011613.p1	4.135	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-29561	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-169670	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-248609	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	109243	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	288382	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	289756	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	1.938164	0.0	denovo_WM_7:-29:0.200	denovo_WM_7:-32:0.543	denovo_WM_7:-47:0.670
chr6	53294299	53294444	reg1009442.p1	4.135	+	AK299674 AK302948 TSC_hg19_v1_chr6_-_53213749 AF338241 NM_001242828 NM_001242830 NM_001242831 NM_021814	-80510	-	TSC_hg19_v1_chr6_-_53213736 AB209798 AL136939 BC074503 BC067123	-80650	-	AK125098 TSC_hg19_v1_chr6_-_53213676	-80732	-	TSC_hg19_v1_chr6_-_53409483 AB516284 CU691792 CU692650 EU832317 EU832402	115095	-	TSC_hg19_v1_chr6_-_53409528 BC039894 M90656	115146	-	TSC_hg19_v1_chr6_-_53409821 AB262176 BC022487	115442	-	AK299674|ELOVL5|60481|ELOVL fatty acid elongase 5##AK302948|ELOVL5|60481|ELOVL fatty acid elongase 5##AF338241|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242828|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242830|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_001242831|ELOVL5|60481|ELOVL fatty acid elongase 5##NM_021814|ELOVL5|60481|ELOVL fatty acid elongase 5##AB209798|ELOVL5|60481|ELOVL fatty acid elongase 5##AL136939|ELOVL5|60481|ELOVL fatty acid elongase 5##BC074503|ELOVL5|60481|ELOVL fatty acid elongase 5##BC067123|ELOVL5|60481|ELOVL fatty acid elongase 5##AK125098|ELOVL5|60481|ELOVL fatty acid elongase 5##AB516284|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832317|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##EU832402|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC039894|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##M90656|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##AB262176|GCLC|2729|glutamate-cysteine ligase, catalytic subunit##BC022487|GCLC|2729|glutamate-cysteine ligase, catalytic subunit	0.0	0.0	
chr7	148715300	148715422	reg1015573.p1	4.135	+	TSC_hg19_v1_chr7_-_148581422 AK303637 NM_001203247 NM_001203248 NM_004456 NM_152998	-133935	-	TSC_hg19_v1_chr7_-_148581380 AK314291	-133980	-	TSC_hg19_v1_chr7_-_148581377 AK293239 AK303585	-133984	-	CU674214 DQ893573 DQ894347 TSC_hg19_v1_chr7_-_148725561 BC000425 BC001928 J05016 AK290971	10194	-	BC006344 BC011754 AK313299 TSC_hg19_v1_chr7_-_148725753	10382	-	TSC_hg19_v1_chr7_-_148725766 NM_004911	10411	-	AK303637|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203247|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203248|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_004456|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_152998|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK314291|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK293239|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK303585|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##DQ893573|PDIA4|9601|protein disulfide isomerase family A, member 4##DQ894347|PDIA4|9601|protein disulfide isomerase family A, member 4##BC000425|PDIA4|9601|protein disulfide isomerase family A, member 4##BC001928|PDIA4|9601|protein disulfide isomerase family A, member 4##AK290971|PDIA4|9601|protein disulfide isomerase family A, member 4##BC006344|PDIA4|9601|protein disulfide isomerase family A, member 4##BC011754|PDIA4|9601|protein disulfide isomerase family A, member 4##AK313299|PDIA4|9601|protein disulfide isomerase family A, member 4##NM_004911|PDIA4|9601|protein disulfide isomerase family A, member 4	0.995389	0.0	denovo_WM_7:-30:0.827
chr8	56776542	56776695	reg1017636.p1	4.135	+	AK054705 TSC_hg19_v1_chr8_+_56686187	-90435	+	TSC_hg19_v1_chr8_+_56686028 AY028423 AK314693 BX648548 AF432215	-90598	+	AK308247 AK056932 NM_152417 BC020835 BC071636	-90721	-	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	15747	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	15777	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	15902	+	AY028423|TGS1|96764|trimethylguanosine synthase 1##AK314693|TGS1|96764|trimethylguanosine synthase 1##BX648548|TGS1|96764|trimethylguanosine synthase 1##AF432215|TGS1|96764|trimethylguanosine synthase 1##AK308247|TMEM68|137695|transmembrane protein 68##AK056932|TMEM68|137695|transmembrane protein 68##NM_152417|TMEM68|137695|transmembrane protein 68##BC020835|TMEM68|137695|transmembrane protein 68##BC071636|TMEM68|137695|transmembrane protein 68##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	1.840915	0.0	denovo_WM_7:-9:0.202	denovo_WM_7:-12:0.404	denovo_WM_7:34:0.210	denovo_WM_7:36:0.473
chr15	40459380	40459556	reg1016170.p2	4.134	+	TSC_hg19_v1_chr15_+_40453269 AK296984 AF107297 BC018739 AF046918 AB208782 AF035933 AF068760 AF046079 AB384719 CU676304	-6126	+	NM_001211 AF053306 TSC_hg19_v1_chr15_+_40453249 AK296795 AK312709	-6239	+	TSC_hg19_v1_chr15_-_40401076 BC060783 BC070043 NM_001003940	-58373	-	AK315817 NM_001128628 NM_001128629 AK315813 AK290227	50239	+	TSC_hg19_v1_chr15_+_40531273 AK131522	71803	+	NM_020168 AJ236915	72585	+	AK296984|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF107297|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##BC018739|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF046918|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AB208782|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF035933|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF068760|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF046079|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##NM_001211|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AF053306|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AK296795|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##AK312709|BUB1B|701|budding uninhibited by benzimidazoles 1 homolog beta (yeast)##BC060783|BMF|90427|Bcl2 modifying factor##BC070043|BMF|90427|Bcl2 modifying factor##NM_001003940|BMF|90427|Bcl2 modifying factor##AK315817|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_001128628|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_001128629|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK315813|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK290227|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AK131522|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##NM_020168|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6##AJ236915|PAK6|56924|p21 protein (Cdc42/Rac)-activated kinase 6	2.040224	0.0	denovo_WM_7:-83:0.847
chr3	15724042	15724217	reg1017785.p2	4.134	+	TSC_hg19_v1_chr3_+_15643452 AK301838	-80666	+	AK297033 TSC_hg19_v1_chr3_+_15643251 NM_000060 AK313252 AK294301 U03274 BC012099 CU680214	-80881	+	BC007440 TSC_hg19_v1_chr3_-_15643077 AJ131753 AK056977 AK299287 AK301546 AK302086 BC001627 AK301990 NM_012260	-81033	-	AY367056 NM_001195099 BC035170 BC048975	73948	-	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	115553	-	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	176883	-	AK301838|BTD|686|biotinidase##AK297033|BTD|686|biotinidase##NM_000060|BTD|686|biotinidase##AK313252|BTD|686|biotinidase##AK294301|BTD|686|biotinidase##U03274|BTD|686|biotinidase##BC012099|BTD|686|biotinidase##BC007440|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AJ131753|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK056977|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK301546|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK302086|HACL1|26061|2-hydroxyacyl-CoA lyase 1##BC001627|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AK301990|HACL1|26061|2-hydroxyacyl-CoA lyase 1##NM_012260|HACL1|26061|2-hydroxyacyl-CoA lyase 1##AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28	0.0	0.0	
chr3	186858327	186858439	reg1017568.p1	4.134	+	TSC_hg19_v1_chr3_-_186857285 L05096 AB063610 BC012328 NM_052969	-1127	-	AK292879 BC040009 NM_003032 X62822 BC031476 L11720 X54363	-118711	+	U67847 TSC_hg19_v1_chr3_+_186714361	-144035	+	BC065202 NM_153708 BC034744 DQ890807 DQ893962 AY562235	56959	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	151256	-	BC013161 NM_022147 AJ251832 AY562238 DQ891046 DQ894225	227815	+	L05096|RPL39L|116832|ribosomal protein L39-like##AB063610|RPL39L|116832|ribosomal protein L39-like##BC012328|RPL39L|116832|ribosomal protein L39-like##NM_052969|RPL39L|116832|ribosomal protein L39-like##AK292879|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC040009|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##NM_003032|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X62822|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC031476|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##L11720|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##X54363|ST6GAL1|6480|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1##BC065202|RTP1|132112|receptor (chemosensory) transporter protein 1##NM_153708|RTP1|132112|receptor (chemosensory) transporter protein 1##BC034744|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ890807|RTP1|132112|receptor (chemosensory) transporter protein 1##DQ893962|RTP1|132112|receptor (chemosensory) transporter protein 1##AY562235|RTP1|132112|receptor (chemosensory) transporter protein 1##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC013161|RTP4|64108|receptor (chemosensory) transporter protein 4##NM_022147|RTP4|64108|receptor (chemosensory) transporter protein 4##AJ251832|RTP4|64108|receptor (chemosensory) transporter protein 4##AY562238|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ891046|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ894225|RTP4|64108|receptor (chemosensory) transporter protein 4	1.995118	0.0	
chr5	68727662	68727834	reg1005410.p1	4.134	+	NM_001038603 NM_001244734 AK055094 BC033689 DQ682656 DQ682657 AK292962	-16802	+	AF085736 NM_133339	-60468	+	NM_133340 NM_133341 AJ001642 AJ004977 AF098533 AF098534	-60860	+	NM_002538 U53823	60370	+	U49184 TSC_hg19_v1_chr5_+_68788631 NM_001205254 AK313501 BC029886 AK290697	60799	+	NM_001205255 FJ786083 FJ786084 GQ225096 GQ225097 GQ225098 GQ402517 AB587564 DQ892423 DQ895637 AB451306 AB451437	72289	+	NM_001038603|MARVELD2|153562|MARVEL domain containing 2##NM_001244734|MARVELD2|153562|MARVEL domain containing 2##AK055094|MARVELD2|153562|MARVEL domain containing 2##BC033689|MARVELD2|153562|MARVEL domain containing 2##DQ682656|MARVELD2|153562|MARVEL domain containing 2##DQ682657|MARVELD2|153562|MARVEL domain containing 2##AK292962|MARVELD2|153562|MARVEL domain containing 2##AF085736|RAD17|5884|RAD17 homolog (S. pombe)##NM_133339|RAD17|5884|RAD17 homolog (S. pombe)##NM_133340|RAD17|5884|RAD17 homolog (S. pombe)##NM_133341|RAD17|5884|RAD17 homolog (S. pombe)##AJ001642|RAD17|5884|RAD17 homolog (S. pombe)##AJ004977|RAD17|5884|RAD17 homolog (S. pombe)##AF098533|RAD17|5884|RAD17 homolog (S. pombe)##AF098534|RAD17|5884|RAD17 homolog (S. pombe)##NM_002538|OCLN|100506658|occludin##U53823|OCLN|100506658|occludin##U49184|OCLN|100506658|occludin##NM_001205254|OCLN|100506658|occludin##AK313501|OCLN|100506658|occludin##BC029886|OCLN|100506658|occludin##AK290697|OCLN|100506658|occludin##NM_001205255|OCLN|100506658|occludin##FJ786083|OCLN|100506658|occludin##FJ786084|OCLN|100506658|occludin##GQ225096|OCLN|100506658|occludin##GQ225097|OCLN|100506658|occludin##GQ225098|OCLN|100506658|occludin##GQ402517|OCLN|100506658|occludin##DQ892423|OCLN|100506658|occludin##DQ895637|OCLN|100506658|occludin##AB451306|OCLN|100506658|occludin##AB451437|OCLN|100506658|occludin	2.206784	0.0	denovo_WM_7:102:0.904
chr11	95786225	95786379	reg1014301.p1	4.133	+	BC052990 BC012086 TSC_hg19_v1_chr11_-_95657272 BC034474 BX647997 NM_001243571 NM_016156 NM_201278 NM_201281 AB028996	-128946	-	AK293243 TSC_hg19_v1_chr11_-_95657092 AK302940 BC040432 AK291277	-129251	-	D42054 BC039711 BC029385 AB385276 AY225092 CU691748 TSC_hg19_v1_chr11_+_95523869	-262462	+	TSC_hg19_v1_chr11_-_96076415 AB058722 AY040322 BC152449 NM_032427 AK308157	290101	-	TSC_hg19_v1_chr11_-_96123063 AF161533 AF245436 AK313893 AK056790 AK074306 NM_024725	336740	-	TSC_hg19_v1_chr11_+_96123176 BC031306 AK290579 NM_003772	336872	+	BC052990|MTMR2|8898|myotubularin related protein 2##BC012086|MTMR2|8898|myotubularin related protein 2##BC034474|MTMR2|8898|myotubularin related protein 2##BX647997|MTMR2|8898|myotubularin related protein 2##NM_001243571|MTMR2|8898|myotubularin related protein 2##NM_016156|MTMR2|8898|myotubularin related protein 2##NM_201278|MTMR2|8898|myotubularin related protein 2##NM_201281|MTMR2|8898|myotubularin related protein 2##AB028996|MTMR2|8898|myotubularin related protein 2##AK293243|MTMR2|8898|myotubularin related protein 2##AK302940|MTMR2|8898|myotubularin related protein 2##BC040432|MTMR2|8898|myotubularin related protein 2##AK291277|MTMR2|8898|myotubularin related protein 2##D42054|CEP57|9702|centrosomal protein 57kDa##BC039711|CEP57|9702|centrosomal protein 57kDa##BC029385|CEP57|9702|centrosomal protein 57kDa##AY225092|CEP57|9702|centrosomal protein 57kDa##AB058722|MAML2|84441|mastermind-like 2 (Drosophila)##AY040322|MAML2|84441|mastermind-like 2 (Drosophila)##BC152449|MAML2|84441|mastermind-like 2 (Drosophila)##NM_032427|MAML2|84441|mastermind-like 2 (Drosophila)##AK308157|MAML2|84441|mastermind-like 2 (Drosophila)##AF161533|CCDC82|79780|coiled-coil domain containing 82##AF245436|CCDC82|79780|coiled-coil domain containing 82##AK313893|CCDC82|79780|coiled-coil domain containing 82##AK056790|CCDC82|79780|coiled-coil domain containing 82##AK074306|CCDC82|79780|coiled-coil domain containing 82##NM_024725|CCDC82|79780|coiled-coil domain containing 82##AK290579|JRKL|8690|jerky homolog-like (mouse)##NM_003772|JRKL|8690|jerky homolog-like (mouse)	0.0	0.0	
chr17	62356216	62356396	reg1010528.p3	4.133	+	BC040522 NM_018469 TSC_hg19_v1_chr17_-_62340654	-15652	-	TSC_hg19_v1_chr17_-_62340645 BC036672	-15659	-	TSC_hg19_v1_chr17_-_62340591 AL832371 BC040521 AL834251 AK091214 AX746854	-15720	-	AF177201 CU679261 TSC_hg19_v1_chr17_-_62493178 AK307801 BC009194 NM_007215	136831	-	AB451257 AB451382 BT006943 DQ890687 DQ893774 AB384902 TSC_hg19_v1_chr17_-_62502320	145977	-	TSC_hg19_v1_chr17_-_62502393 BC016027 AB209919	146076	-	BC040522|TEX2|55852|testis expressed 2##NM_018469|TEX2|55852|testis expressed 2##BC036672|TEX2|55852|testis expressed 2##AL832371|TEX2|55852|testis expressed 2##BC040521|TEX2|55852|testis expressed 2##AL834251|TEX2|55852|testis expressed 2##AK091214|TEX2|55852|testis expressed 2##AF177201|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AK307801|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##BC009194|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##NM_007215|POLG2|11232|polymerase (DNA directed), gamma 2, accessory subunit##AB451257|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB451382|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BT006943|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ890687|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##DQ893774|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##BC016027|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5##AB209919|DDX5|1655|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	0.0	0.0	
chr22	22044830	22044955	reg1012246.p2	4.133	+	NM_014337 NM_148175 NM_148176 TSC_hg19_v1_chr22_+_22020298 AF320072 AK289545 BC000022 U37219 AK127259 BC028385 AK299206 CR456548 DQ891659 DQ894846 AB463162 CU013148 CU013436 CU673996 CU688484	-24563	+	TSC_hg19_v1_chr22_+_21996619 CR456570 AF277316 AB528230 BC139837 CU013169 CU013457	-48253	+	TSC_hg19_v1_chr22_+_21996608 BC006248 AB043007	-48291	+	BC034486 BC074501 TSC_hg19_v1_chr22_-_22090057 BC048303 NM_013313 AB098734 AB098735	45156	-	TSC_hg19_v1_chr22_-_22221936 DQ399292 AB384931 EU176323 EU831429 EU831522 AK307615 Z11694 AK090869 BC099905	176937	-	AK295188 TSC_hg19_v1_chr22_-_22221938	177045	-	NM_014337|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148175|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148176|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AF320072|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK289545|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC000022|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##U37219|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK127259|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC028385|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK299206|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456548|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ891659|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ894846|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013148|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013436|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456570|SDF2L1|23753|stromal cell-derived factor 2-like 1##AF277316|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC139837|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013169|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013457|SDF2L1|23753|stromal cell-derived factor 2-like 1##AB043007|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC034486|YPEL1|29799|yippee-like 1 (Drosophila)##BC074501|YPEL1|29799|yippee-like 1 (Drosophila)##BC048303|YPEL1|29799|yippee-like 1 (Drosophila)##NM_013313|YPEL1|29799|yippee-like 1 (Drosophila)##AB098734|YPEL1|29799|yippee-like 1 (Drosophila)##AB098735|YPEL1|29799|yippee-like 1 (Drosophila)##DQ399292|MAPK1|5594|mitogen-activated protein kinase 1##EU176323|MAPK1|5594|mitogen-activated protein kinase 1##EU831429|MAPK1|5594|mitogen-activated protein kinase 1##EU831522|MAPK1|5594|mitogen-activated protein kinase 1##AK307615|MAPK1|5594|mitogen-activated protein kinase 1##Z11694|MAPK1|5594|mitogen-activated protein kinase 1##AK090869|MAPK1|5594|mitogen-activated protein kinase 1##BC099905|MAPK1|5594|mitogen-activated protein kinase 1##AK295188|MAPK1|5594|mitogen-activated protein kinase 1	0.0	0.0	
chr5	58187161	58187341	reg1007042.p1	4.133	+	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-308332	+	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	-399957	+	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	-431315	-	BC036319 NM_001197223	108507	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	148127	-	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	384679	-	AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.680955	0.0	denovo_WM_7:-23:0.541
chr5	89900454	89900542	reg1013469.p1	4.133	+	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-45884	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-75132	-	NM_006467 AK295434 U93868	-129796	+	AK091866 TSC_hg19_v1_chr5_-_90610220	709747	-	TSC_hg19_v1_chr5_+_90676181 BC043415	775664	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	778634	-	AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK091866|LOC100505994|100505994|uncharacterized LOC100505994##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3	0.731936	0.386182	CTCF.p2:6:0.386	denovo_WM_7:-18:0.707
chr5	96209431	96209552	reg1013390.p1	4.133	+	AK310535 BC030775 NM_001198541	-59666	-	TSC_hg19_v1_chr5_-_96143701 NM_001040458 NM_016442	-65701	-	TSC_hg19_v1_chr5_-_96143614 AF106037 AF183569 AF222340 AY358590 AK291636 AY028806 AY028807	-65869	-	NM_001130140 NM_022350 AK074281	2175	+	TSC_hg19_v1_chr5_+_96212203 AK312864 AB109031 AB163917 BC065240	2697	+	TSC_hg19_v1_chr5_+_96271097 AK096804	61602	+	AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001040458|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_016442|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF106037|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF183569|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF222340|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY358590|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK291636|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028806|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028807|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001130140|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_022350|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK074281|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK096804|LNPEP|4012|leucyl/cystinyl aminopeptidase	0.945758	0.0	denovo_WM_7:-93:0.339
chr6	152086669	152086817	reg1019008.p1	4.133	+	NM_001122742 U68068 AK309580 AB588629 AB588630	-75050	+	NM_025059 BC060803 BC035003 AK225330 AK026958	-271525	+	AK298490 TSC_hg19_v1_chr6_+_151773653 AK310840 AL110241 BC011348 CU679902	-313101	+	NM_001122741 AK293019 AK313644	40080	+	NM_001122740 U68067	41710	+	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	42123	+	NM_001122742|ESR1|2099|estrogen receptor 1##U68068|ESR1|2099|estrogen receptor 1##AK309580|ESR1|2099|estrogen receptor 1##AB588629|ESR1|2099|estrogen receptor 1##AB588630|ESR1|2099|estrogen receptor 1##NM_025059|C6orf97|80129|chromosome 6 open reading frame 97##BC060803|C6orf97|80129|chromosome 6 open reading frame 97##BC035003|C6orf97|80129|chromosome 6 open reading frame 97##AK225330|C6orf97|80129|chromosome 6 open reading frame 97##AK026958|C6orf97|80129|chromosome 6 open reading frame 97##AK298490|C6orf211|79624|chromosome 6 open reading frame 211##AK310840|C6orf211|79624|chromosome 6 open reading frame 211##AL110241|C6orf211|79624|chromosome 6 open reading frame 211##BC011348|C6orf211|79624|chromosome 6 open reading frame 211##NM_001122741|ESR1|2099|estrogen receptor 1##AK293019|ESR1|2099|estrogen receptor 1##AK313644|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1	0.0	0.525515	CTCF.p2:19:0.526
chr8	102655570	102655663	reg1011592.p1	4.133	+	TSC_hg19_v1_chr8_+_102504840 AK023844 AK292853 BC069618 BC069633 BC069638 BC129822 BC129823	-150706	+	TSC_hg19_v1_chr8_+_102504667 NM_024915 AK296817 AK310221	-150951	+	TSC_hg19_v1_chr8_-_102217929 NM_001042510 NM_016096	-437662	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	147567	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	147584	-	NM_032041	147822	-	AK023844|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK292853|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069618|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069633|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069638|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129822|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129823|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_024915|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK296817|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK310221|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_001042510|ZNF706|51123|zinc finger protein 706##NM_016096|ZNF706|51123|zinc finger protein 706##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##NM_032041|NCALD|83988|neurocalcin delta	1.037408	0.0	
chr9	19102959	19103139	reg1009770.p1	4.133	+	TSC_hg19_v1_chr9_-_19102926 AF533709	-40	-	AL832495 BC026178 TSC_hg19_v1_chr9_-_19102903 AF537091 AK056458 NM_017645	-148	-	AB527315 AM393468 BC113981 BC114492 TSC_hg19_v1_chr9_-_19102891	-279	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	24428	-	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	24499	-	NM_017925 BC144484 BC144485	187702	+	AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##AL832495|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC026178|HAUS6|54801|HAUS augmin-like complex, subunit 6##AF537091|HAUS6|54801|HAUS augmin-like complex, subunit 6##AK056458|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017645|HAUS6|54801|HAUS augmin-like complex, subunit 6##AM393468|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC113981|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC114492|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C	0.0	0.0	
chr9	84768123	84768246	reg1016225.p1	4.133	+	AK128831 NM_001001670	-164498	+	NM_207416 AK308327	-209741	+	NM_001145197 AK125847 AK308327	-224813	+	AK290986 TSC_hg19_v1_chr9_-_85677861	909641	-	BC023566 NM_152573 TSC_hg19_v1_chr9_-_85678058 AK056176	909882	-	GQ129452 BC023560 NM_001244962	1113963	-	AK128831|FAM75D1|389763|family with sequence similarity 75, member D1##NM_001001670|FAM75D1|389763|family with sequence similarity 75, member D1##NM_207416|FAM75D3|389762|family with sequence similarity 75, member D3##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4##AK290986|RASEF|158158|RAS and EF-hand domain containing##BC023566|RASEF|158158|RAS and EF-hand domain containing##NM_152573|RASEF|158158|RAS and EF-hand domain containing##AK056176|RASEF|158158|RAS and EF-hand domain containing##GQ129452|FRMD3|257019|FERM domain containing 3##BC023560|FRMD3|257019|FERM domain containing 3##NM_001244962|FRMD3|257019|FERM domain containing 3	0.0	0.0	
chr12	118483489	118483633	reg1012648.p1	4.132	+	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	-28993	+	NM_173598	-77534	-	AK294435 AF446135 EU753241 U17327 AK307481 NM_000620 NM_001204218	-684053	-	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	15374	-	TSC_hg19_v1_chr12_-_118499892 AK295555	16374	-	TSC_hg19_v1_chr12_-_118541813 BC001437 BC028698 BC034471 NM_019086 AK000681	58189	-	NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_173598|KSR2|283455|kinase suppressor of ras 2##AK294435|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446135|NOS1|4842|nitric oxide synthase 1 (neuronal)##EU753241|NOS1|4842|nitric oxide synthase 1 (neuronal)##U17327|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK307481|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_000620|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204218|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2##AK295555|WSB2|55884|WD repeat and SOCS box containing 2##BC001437|VSIG10|54621|V-set and immunoglobulin domain containing 10##BC028698|VSIG10|54621|V-set and immunoglobulin domain containing 10##BC034471|VSIG10|54621|V-set and immunoglobulin domain containing 10##NM_019086|VSIG10|54621|V-set and immunoglobulin domain containing 10##AK000681|VSIG10|54621|V-set and immunoglobulin domain containing 10	0.988312	0.0	denovo_WM_7:-32:0.424	denovo_WM_7:-33:0.424
chr16	68790303	68790456	reg1012296.p2	4.132	+	TSC_hg19_v1_chr16_+_68771304 Z18923	-19068	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	-19134	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	-19160	+	TSC_hg19_v1_chr16_+_68877504 BC092500 AB051533 NM_024562 AB463318	87126	+	AK291400 NM_001199280	349087	+	TSC_hg19_v1_chr16_+_69140124 NM_138612 BC021853	349761	+	Z18923|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC092500|TMCO7|79613|transmembrane and coiled-coil domains 7##AB051533|TMCO7|79613|transmembrane and coiled-coil domains 7##NM_024562|TMCO7|79613|transmembrane and coiled-coil domains 7##AK291400|HAS3|3038|hyaluronan synthase 3##NM_001199280|HAS3|3038|hyaluronan synthase 3##NM_138612|HAS3|3038|hyaluronan synthase 3##BC021853|HAS3|3038|hyaluronan synthase 3	0.0	0.0	
chr5	68567358	68567458	reg1008999.p2	4.132	+	AK026509 TSC_hg19_v1_chr5_+_68530769 X77303 X77743 BC000834 AB385525 AM392563 AM392604 AM392628 AM393110 CU674418 CU675099	-36639	+	TSC_hg19_v1_chr5_+_68530713 BC005298 L20320 X79193	-36692	+	NM_001799 AK308493 Y13120 TSC_hg19_v1_chr5_+_68530709	-36742	+	AB024692 BC108715 BC113749 NM_176816	48946	-	AL122068 NM_133343	97715	+	TSC_hg19_v1_chr5_-_68665348 EU831966 EU832059 U21858 BC007349 BC007426 BC003400 AJ878880 AJ878881 AF151895 NM_003187 NM_016283	97954	-	AK026509|CDK7|1022|cyclin-dependent kinase 7##X77303|CDK7|1022|cyclin-dependent kinase 7##X77743|CDK7|1022|cyclin-dependent kinase 7##BC000834|CDK7|1022|cyclin-dependent kinase 7##AM392563|CDK7|1022|cyclin-dependent kinase 7##AM392604|CDK7|1022|cyclin-dependent kinase 7##AM392628|CDK7|1022|cyclin-dependent kinase 7##AM393110|CDK7|1022|cyclin-dependent kinase 7##BC005298|CDK7|1022|cyclin-dependent kinase 7##L20320|CDK7|1022|cyclin-dependent kinase 7##X79193|CDK7|1022|cyclin-dependent kinase 7##NM_001799|CDK7|1022|cyclin-dependent kinase 7##AK308493|CDK7|1022|cyclin-dependent kinase 7##Y13120|CDK7|1022|cyclin-dependent kinase 7##AB024692|CCDC125|202243|coiled-coil domain containing 125##BC108715|CCDC125|202243|coiled-coil domain containing 125##BC113749|CCDC125|202243|coiled-coil domain containing 125##NM_176816|CCDC125|202243|coiled-coil domain containing 125##AL122068|RAD17|5884|RAD17 homolog (S. pombe)##NM_133343|RAD17|5884|RAD17 homolog (S. pombe)##EU831966|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##EU832059|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##U21858|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##BC007349|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##BC007426|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##BC003400|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##AJ878880|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##AJ878881|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##AF151895|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##NM_003187|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa##NM_016283|TAF9|6880|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa	0.990274	0.0	denovo_WM_7:-58:0.422	denovo_WM_7:-59:0.422
chr7	116170250	116170379	reg1009593.p1	4.132	+	NM_001172896 TSC_hg19_v1_chr7_+_116166415 AF172085 NM_001172897 AK307501 EF649773 EF649774 AB209926	-3910	+	TSC_hg19_v1_chr7_+_116165089 Z18951 BC082246 DQ890647 DQ893827 EU176473 AB489179 AM393679 AB451284 AB451416 BT007143	-5212	+	BC009685 TSC_hg19_v1_chr7_+_116165054 BC006432 NM_001172895 AY762103	-5256	+	TSC_hg19_v1_chr7_+_116312490 EU176015 J02958 NM_000245 NM_001127500 X54559 DQ656040 BC130420 AK309532	142158	+	AK296974 TSC_hg19_v1_chr7_+_116364175	193861	+	TSC_hg19_v1_chr7_+_116395441 BC127890	225137	+	NM_001172896|CAV1|857|caveolin 1, caveolae protein, 22kDa##AF172085|CAV1|857|caveolin 1, caveolae protein, 22kDa##NM_001172897|CAV1|857|caveolin 1, caveolae protein, 22kDa##AK307501|CAV1|857|caveolin 1, caveolae protein, 22kDa##EF649773|CAV1|857|caveolin 1, caveolae protein, 22kDa##EF649774|CAV1|857|caveolin 1, caveolae protein, 22kDa##AB209926|CAV1|857|caveolin 1, caveolae protein, 22kDa##Z18951|CAV1|857|caveolin 1, caveolae protein, 22kDa##BC082246|CAV1|857|caveolin 1, caveolae protein, 22kDa##DQ890647|CAV1|857|caveolin 1, caveolae protein, 22kDa##DQ893827|CAV1|857|caveolin 1, caveolae protein, 22kDa##EU176473|CAV1|857|caveolin 1, caveolae protein, 22kDa##AM393679|CAV1|857|caveolin 1, caveolae protein, 22kDa##AB451284|CAV1|857|caveolin 1, caveolae protein, 22kDa##AB451416|CAV1|857|caveolin 1, caveolae protein, 22kDa##BT007143|CAV1|857|caveolin 1, caveolae protein, 22kDa##BC009685|CAV1|857|caveolin 1, caveolae protein, 22kDa##BC006432|CAV1|857|caveolin 1, caveolae protein, 22kDa##NM_001172895|CAV1|857|caveolin 1, caveolae protein, 22kDa##AY762103|CAV1|857|caveolin 1, caveolae protein, 22kDa##EU176015|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##J02958|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##NM_000245|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##NM_001127500|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##X54559|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##BC130420|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##AK309532|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)##AK296974|MET|4233|met proto-oncogene (hepatocyte growth factor receptor)	0.985241	0.0	denovo_WM_7:-46:0.876
chr7	963014	963130	reg1013650.p1	4.132	+	AK300644 AK300859 TSC_hg19_v1_chr7_-_960513	-2558	-	TSC_hg19_v1_chr7_+_916249 BC003550 AK023560 AF132954	-46802	+	TSC_hg19_v1_chr7_+_916188 NM_015949	-46869	+	TSC_hg19_v1_chr7_-_994129 AB587419 BC033747	31043	-	TSC_hg19_v1_chr7_-_994317 NM_006869	31241	-	TSC_hg19_v1_chr7_-_994377 AJ006422	31391	-	AK300644|ADAP1|11033|ArfGAP with dual PH domains 1##AK300859|ADAP1|11033|ArfGAP with dual PH domains 1##BC003550|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AK023560|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##AF132954|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##NM_015949|GET4|51608|golgi to ER traffic protein 4 homolog (S. cerevisiae)##BC033747|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1	0.0	0.0	
chr12	14306805	14306924	reg1003935.p2	4.131	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-173878	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-957135	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-957147	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	211771	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	231408	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	413745	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.990095	0.0	
chr12	4645116	4645244	reg1013358.p1	4.131	+	BC121097 BC121098 NM_020996 X63454	-90401	-	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	-156380	-	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	-214789	+	TSC_hg19_v1_chr12_-_4647633 AJ272205 BC016908	2439	-	AL834377 NM_020374 TSC_hg19_v1_chr12_-_4647648	2466	-	TSC_hg19_v1_chr12_-_4647672 AK074479 BX641128	2488	-	BC121097|FGF6|2251|fibroblast growth factor 6##BC121098|FGF6|2251|fibroblast growth factor 6##NM_020996|FGF6|2251|fibroblast growth factor 6##X63454|FGF6|2251|fibroblast growth factor 6##AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##AJ272205|C12orf4|57102|chromosome 12 open reading frame 4##BC016908|C12orf4|57102|chromosome 12 open reading frame 4##AL834377|C12orf4|57102|chromosome 12 open reading frame 4##NM_020374|C12orf4|57102|chromosome 12 open reading frame 4##AK074479|C12orf4|57102|chromosome 12 open reading frame 4##BX641128|C12orf4|57102|chromosome 12 open reading frame 4	0.970348	0.0	denovo_WM_7:-11:0.970
chr14	68773098	68773198	reg1016292.p1	4.131	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-486628	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-489849	-	AK315462 NM_152443	-604546	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	486572	-	NM_001244698 NM_004926	487482	-	NM_001244701 AB528867	489836	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr15	64850828	64850935	reg1003122.p1	4.131	+	NM_015042	-59263	+	TSC_hg19_v1_chr15_+_64752786 BC142647	-98022	+	NM_016213 TSC_hg19_v1_chr15_+_64680041 BC012448 AK314319 AB464298 EU446746	-170845	+	AB056456 TSC_hg19_v1_chr15_+_64885153	34272	+	BC119629 BC119630 BC148316 BC127630 TSC_hg19_v1_chr15_-_64995360 BC127631 AF242520 AF242521	144479	-	TSC_hg19_v1_chr15_-_64995415 AF057297 BC063577 BC073877 BC035493 BC092483	144521	-	NM_015042|ZNF609|23060|zinc finger protein 609##BC142647|ZNF609|23060|zinc finger protein 609##NM_016213|TRIP4|9325|thyroid hormone receptor interactor 4##BC012448|TRIP4|9325|thyroid hormone receptor interactor 4##AK314319|TRIP4|9325|thyroid hormone receptor interactor 4##EU446746|TRIP4|9325|thyroid hormone receptor interactor 4##BC119629|OAZ2|4947|ornithine decarboxylase antizyme 2##BC119630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC148316|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127631|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242520|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242521|OAZ2|4947|ornithine decarboxylase antizyme 2##AF057297|OAZ2|4947|ornithine decarboxylase antizyme 2##BC063577|OAZ2|4947|ornithine decarboxylase antizyme 2##BC073877|OAZ2|4947|ornithine decarboxylase antizyme 2##BC035493|OAZ2|4947|ornithine decarboxylase antizyme 2##BC092483|OAZ2|4947|ornithine decarboxylase antizyme 2	0.0	0.0	
chr20	32400665	32400818	reg1000834.p1	4.131	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	-1521	+	TSC_hg19_v1_chr20_+_32399127 NM_176812	-1655	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-80945	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	180738	+	TSC_hg19_v1_chr20_+_32581567 AK226085	180846	+	TSC_hg19_v1_chr20_+_32581716 BC103753 AK299766	180963	+	AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##AK226085|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##BC103753|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##AK299766|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.0	0.0	
chr20	34140730	34140853	reg1014806.p1	4.131	+	TSC_hg19_v1_chr20_+_34129833 CU679479 CU680742 AF091085	-10946	+	AK074550 BC009765 TSC_hg19_v1_chr20_+_34129829 AK096484 AK300916	-10961	+	NM_015966 NM_198398 TSC_hg19_v1_chr20_+_34129827 AF308298 AF077030 AF151812 EF206690 BC014014	-10989	+	BC029951 AY461812 TSC_hg19_v1_chr20_-_34195432	54631	-	TSC_hg19_v1_chr20_+_34203752 AF262992 NM_003116 BC143783 AB464242	63044	+	NM_003915	101039	-	AF091085|ERGIC3|51614|ERGIC and golgi 3##AK074550|ERGIC3|51614|ERGIC and golgi 3##BC009765|ERGIC3|51614|ERGIC and golgi 3##AK096484|ERGIC3|51614|ERGIC and golgi 3##AK300916|ERGIC3|51614|ERGIC and golgi 3##NM_015966|ERGIC3|51614|ERGIC and golgi 3##NM_198398|ERGIC3|51614|ERGIC and golgi 3##AF308298|ERGIC3|51614|ERGIC and golgi 3##AF077030|ERGIC3|51614|ERGIC and golgi 3##AF151812|ERGIC3|51614|ERGIC and golgi 3##EF206690|ERGIC3|51614|ERGIC and golgi 3##BC014014|ERGIC3|51614|ERGIC and golgi 3##BC029951|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AY461812|FER1L4|80307|fer-1-like 4 (C. elegans) pseudogene##AF262992|SPAG4|6676|sperm associated antigen 4##NM_003116|SPAG4|6676|sperm associated antigen 4##BC143783|SPAG4|6676|sperm associated antigen 4##NM_003915|CPNE1|8904|copine I	1.98458	0.0	
chr2	176440198	176440378	reg1003069.p1	4.131	+	CR407601 EU832770 GQ129314 BC106881 U09813 NM_001002258 TSC_hg19_v1_chr2_-_176046438 AK311999 NM_001190329 NM_001689	-393984	-	TSC_hg19_v1_chr2_-_176032932 BC026175 BC107698 DQ003036 DQ003037 DQ003038 DQ003039 DQ003040 DQ003041 DQ003042 DQ003043 DQ003044 DQ003045 DQ003046 DQ003047 DQ003048 DQ003049 NM_001880 AK128731 BX648469	-407393	-	AK289941 BC011393 NM_001822 TSC_hg19_v1_chr2_-_175870101 AB209788 AK300890 NM_001025201	-570275	-	TSC_hg19_v1_chr2_-_176866988 AB051502 AK056532 BC110329 BC105132 BC105134 BC143681 BC143683 AK302833 BC064661 NM_030650 CR936742	426687	-	NM_001080458	508401	-	TSC_hg19_v1_chr2_+_176957451 NM_000523 AB463753	517256	+	CR407601|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##EU832770|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##GQ129314|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC106881|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##U09813|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001002258|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##AK311999|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001190329|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##NM_001689|ATP5G3|518|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)##BC026175|ATF2|1386|activating transcription factor 2##BC107698|ATF2|1386|activating transcription factor 2##DQ003036|ATF2|1386|activating transcription factor 2##DQ003037|ATF2|1386|activating transcription factor 2##DQ003038|ATF2|1386|activating transcription factor 2##DQ003039|ATF2|1386|activating transcription factor 2##DQ003040|ATF2|1386|activating transcription factor 2##DQ003041|ATF2|1386|activating transcription factor 2##DQ003042|ATF2|1386|activating transcription factor 2##DQ003043|ATF2|1386|activating transcription factor 2##DQ003044|ATF2|1386|activating transcription factor 2##DQ003045|ATF2|1386|activating transcription factor 2##DQ003046|ATF2|1386|activating transcription factor 2##DQ003047|ATF2|1386|activating transcription factor 2##DQ003048|ATF2|1386|activating transcription factor 2##DQ003049|ATF2|1386|activating transcription factor 2##NM_001880|ATF2|1386|activating transcription factor 2##AK128731|ATF2|1386|activating transcription factor 2##BX648469|ATF2|1386|activating transcription factor 2##AK289941|CHN1|1123|chimerin (chimaerin) 1##BC011393|CHN1|1123|chimerin (chimaerin) 1##NM_001822|CHN1|1123|chimerin (chimaerin) 1##AB209788|CHN1|1123|chimerin (chimaerin) 1##AK300890|CHN1|1123|chimerin (chimaerin) 1##NM_001025201|CHN1|1123|chimerin (chimaerin) 1##AB051502|KIAA1715|80856|KIAA1715##AK056532|KIAA1715|80856|KIAA1715##BC110329|KIAA1715|80856|KIAA1715##BC105132|KIAA1715|80856|KIAA1715##BC105134|KIAA1715|80856|KIAA1715##BC143681|KIAA1715|80856|KIAA1715##BC143683|KIAA1715|80856|KIAA1715##AK302833|KIAA1715|80856|KIAA1715##BC064661|KIAA1715|80856|KIAA1715##NM_030650|KIAA1715|80856|KIAA1715##CR936742|KIAA1715|80856|KIAA1715##NM_001080458|EVX2|344191|even-skipped homeobox 2##NM_000523|HOXD13|3239|homeobox D13	0.9553	0.0	denovo_WM_7:27:0.705
chr3	72772754	72772907	reg1010579.p2	4.131	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-938559	-	AK313656 NM_173359	-968907	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-969308	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	124718	-	BC017274 TSC_hg19_v1_chr3_-_72897575	124745	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	124762	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	1.015446	0.0	denovo_WM_7:43:0.547
chr5	116038810	116038990	reg1009472.p2	4.131	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-128386	-	TSC_hg19_v1_chr5_+_115898220 D28352	-140676	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-618179	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2285338	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2367911	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2368265	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	2.779785	0.0	denovo_WM_7:-11:0.755	denovo_WM_7:-26:0.904	denovo_WM_7:-42:0.832
chr6	116368495	116368595	reg1014544.p1	4.131	+	AF503292 NM_153612 BC093911 BC093913	-1984521	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-2076209	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	-2076273	-	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	13337	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	53464	+	AK097758 TSC_hg19_v1_chr6_-_116422450	53885	-	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1	0.998005	0.0	denovo_WM_7:22:0.479	denovo_WM_7:23:0.427
chr17	73400233	73400413	reg1007282.p1	4.130	+	AB385058 AF498925 CR450363 CR541942 DQ891830 DQ894923 CU674310 L29511 TSC_hg19_v1_chr17_-_73389844	-10546	-	TSC_hg19_v1_chr17_-_73285501 AK075239 NM_001126121 NM_001126122 NM_021734	-114794	-	BC001075 BC005120 TSC_hg19_v1_chr17_-_73285471 AL833387	-114851	-	AK091010 TSC_hg19_v1_chr17_-_73401721	1321	-	TSC_hg19_v1_chr17_-_73401738 BC000631	1411	-	TSC_hg19_v1_chr17_-_73401781 AK315565	1456	-	AF498925|GRB2|2885|growth factor receptor-bound protein 2##CR450363|GRB2|2885|growth factor receptor-bound protein 2##CR541942|GRB2|2885|growth factor receptor-bound protein 2##DQ891830|GRB2|2885|growth factor receptor-bound protein 2##DQ894923|GRB2|2885|growth factor receptor-bound protein 2##L29511|GRB2|2885|growth factor receptor-bound protein 2##AK075239|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126121|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_001126122|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##NM_021734|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC001075|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##BC005120|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AL833387|SLC25A19|60386|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19##AK091010|GRB2|2885|growth factor receptor-bound protein 2##BC000631|GRB2|2885|growth factor receptor-bound protein 2##AK315565|GRB2|2885|growth factor receptor-bound protein 2	0.0	0.0	
chr21	42739385	42739525	reg1019967.p1	4.130	+	TSC_hg19_v1_chr21_+_42733956 M30818 NM_002463 AK308060 AK126107	-5517	+	AK125528 NM_058186 NM_206964 TSC_hg19_v1_chr21_+_42688738 BC057829 AF375989 AJ409094 AY040086 AY358459 HQ257913 AF494379	-50722	+	AK302095 BC036314 TSC_hg19_v1_chr21_+_42676236	-63249	+	TSC_hg19_v1_chr21_+_42742025 AK298780	2564	+	AK096355 NM_001144925	53025	+	NM_002462 TSC_hg19_v1_chr21_+_42798165 AK225885 AK315465 NM_001178046 M33882 BC052255	58639	+	M30818|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##NM_002463|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK308060|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK126107|LOC100131190|100131190|uncharacterized LOC100131190##AK125528|FAM3B|54097|family with sequence similarity 3, member B##NM_058186|FAM3B|54097|family with sequence similarity 3, member B##NM_206964|FAM3B|54097|family with sequence similarity 3, member B##BC057829|FAM3B|54097|family with sequence similarity 3, member B##AF375989|FAM3B|54097|family with sequence similarity 3, member B##AJ409094|FAM3B|54097|family with sequence similarity 3, member B##AY040086|FAM3B|54097|family with sequence similarity 3, member B##AY358459|FAM3B|54097|family with sequence similarity 3, member B##HQ257913|FAM3B|54097|family with sequence similarity 3, member B##AF494379|FAM3B|54097|family with sequence similarity 3, member B##BC036314|FAM3B|54097|family with sequence similarity 3, member B##AK298780|MX2|4600|myxovirus (influenza virus) resistance 2 (mouse)##AK096355|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_001144925|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_002462|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##AK225885|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##AK315465|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##NM_001178046|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##M33882|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)##BC052255|MX1|4599|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)	0.0	0.0	
chr4	47497245	47497418	reg1015722.p1	4.130	+	TSC_hg19_v1_chr4_+_47487301 BC057839 BC108723 AJ441078 NM_020453 BC131535	-10001	+	TSC_hg19_v1_chr4_-_47465720 BC008371	-31603	-	TSC_hg19_v1_chr4_-_47465683 AY542163 BC015145 NM_017845 AK000509 BC019826 AF182421	-31652	-	TSC_hg19_v1_chr4_+_47708352 D28417	211023	+	AF133845 BC110451 NM_006587 AK297675 AK304038 AK304466 BX648285	342759	-	TSC_hg19_v1_chr4_-_47916595 AB181916 AK302440 AK131311 NM_152995 BC051193 AB085695	419264	-	BC057839|ATP10D|57205|ATPase, class V, type 10D##AJ441078|ATP10D|57205|ATPase, class V, type 10D##NM_020453|ATP10D|57205|ATPase, class V, type 10D##BC131535|ATP10D|57205|ATPase, class V, type 10D##BC008371|COMMD8|54951|COMM domain containing 8##AY542163|COMMD8|54951|COMM domain containing 8##BC015145|COMMD8|54951|COMM domain containing 8##NM_017845|COMMD8|54951|COMM domain containing 8##AK000509|COMMD8|54951|COMM domain containing 8##BC019826|COMMD8|54951|COMM domain containing 8##AF182421|COMMD8|54951|COMM domain containing 8##AF133845|CORIN|10699|corin, serine peptidase##BC110451|CORIN|10699|corin, serine peptidase##NM_006587|CORIN|10699|corin, serine peptidase##AK297675|CORIN|10699|corin, serine peptidase##AK304038|CORIN|10699|corin, serine peptidase##AK304466|CORIN|10699|corin, serine peptidase##BX648285|CORIN|10699|corin, serine peptidase##AB181916|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##AK302440|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##NM_152995|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##BC051193|NFXL1|152518|nuclear transcription factor, X-box binding-like 1##AB085695|NFXL1|152518|nuclear transcription factor, X-box binding-like 1	0.850687	0.0	denovo_WM_7:21:0.498
chr5	124747567	124747747	reg1004748.p2	4.130	+	BC131507 AB033107 BC151226 NM_020747	-666869	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1899775	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1988513	-	NM_001146319 AK316288 AK300154	948157	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1011186	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1011530	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.99949	0.0	denovo_WM_7:2:0.761
chr5	133719962	133720097	reg1011419.p1	4.130	+	TSC_hg19_v1_chr5_+_133707159 BC008404 BC008470 AK312012 X53251 BC005979 AB590169 DQ893113 DQ896387 BT007071 CR407634	-12833	+	M74525 NM_003337 TSC_hg19_v1_chr5_+_133706874	-13155	+	TSC_hg19_v1_chr5_-_133706735 AK301802 AK294740 AK294559 AK299305 AK297586 AK310955	-13300	-	TSC_hg19_v1_chr5_-_133747573 BC018086 BC008293	27525	-	TSC_hg19_v1_chr5_-_133747599 NM_080656	27570	-	TSC_hg19_v1_chr5_+_133842276 BC032795	122261	+	BC008404|UBE2B|7320|ubiquitin-conjugating enzyme E2B##BC008470|UBE2B|7320|ubiquitin-conjugating enzyme E2B##AK312012|UBE2B|7320|ubiquitin-conjugating enzyme E2B##X53251|UBE2B|7320|ubiquitin-conjugating enzyme E2B##BC005979|UBE2B|7320|ubiquitin-conjugating enzyme E2B##DQ893113|UBE2B|7320|ubiquitin-conjugating enzyme E2B##DQ896387|UBE2B|7320|ubiquitin-conjugating enzyme E2B##BT007071|UBE2B|7320|ubiquitin-conjugating enzyme E2B##CR407634|UBE2B|7320|ubiquitin-conjugating enzyme E2B##M74525|UBE2B|7320|ubiquitin-conjugating enzyme E2B##NM_003337|UBE2B|7320|ubiquitin-conjugating enzyme E2B##AK301802|CDKL3|51265|cyclin-dependent kinase-like 3##AK294740|CDKL3|51265|cyclin-dependent kinase-like 3##AK294559|CDKL3|51265|cyclin-dependent kinase-like 3##AK299305|CDKL3|51265|cyclin-dependent kinase-like 3##AK297586|CDKL3|51265|cyclin-dependent kinase-like 3##AK310955|CDKL3|51265|cyclin-dependent kinase-like 3##BC018086|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##BC008293|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like##NM_080656|CDKN2AIPNL|91368|CDKN2A interacting protein N-terminal like	0.91145	0.0	denovo_WM_7:23:0.630
chr12	72240324	72240411	reg1012967.p2	4.129	+	NM_001146213 NM_001146214 NM_022771 TSC_hg19_v1_chr12_+_72233538 AK022147 AK297626 AK307922 BC028352 AK225747 AL833639 AK225221 AK292306 AB449901	-6832	+	AB385582 AM393692 TSC_hg19_v1_chr12_+_72148987	-91419	+	BC021901 BC092475 TSC_hg19_v1_chr12_+_72148653 AF091035 NM_014999	-91712	+	AY098914 NM_173353 BC114442 BC114499 AK094614	92323	+	TSC_hg19_v1_chr12_-_72666143 BC093901 BC093903	425811	-	AK095156 TSC_hg19_v1_chr12_-_72666355	425976	-	NM_001146213|TBC1D15|64786|TBC1 domain family, member 15##NM_001146214|TBC1D15|64786|TBC1 domain family, member 15##NM_022771|TBC1D15|64786|TBC1 domain family, member 15##AK022147|TBC1D15|64786|TBC1 domain family, member 15##AK297626|TBC1D15|64786|TBC1 domain family, member 15##AK307922|TBC1D15|64786|TBC1 domain family, member 15##BC028352|TBC1D15|64786|TBC1 domain family, member 15##AK225747|TBC1D15|64786|TBC1 domain family, member 15##AL833639|TBC1D15|64786|TBC1 domain family, member 15##AK225221|TBC1D15|64786|TBC1 domain family, member 15##AK292306|TBC1D15|64786|TBC1 domain family, member 15##AB449901|TBC1D15|64786|TBC1 domain family, member 15##AM393692|RAB21|23011|RAB21, member RAS oncogene family##BC021901|RAB21|23011|RAB21, member RAS oncogene family##BC092475|RAB21|23011|RAB21, member RAS oncogene family##AF091035|RAB21|23011|RAB21, member RAS oncogene family##NM_014999|RAB21|23011|RAB21, member RAS oncogene family##AY098914|TPH2|121278|tryptophan hydroxylase 2##NM_173353|TPH2|121278|tryptophan hydroxylase 2##BC114442|TPH2|121278|tryptophan hydroxylase 2##BC114499|TPH2|121278|tryptophan hydroxylase 2##AK094614|TPH2|121278|tryptophan hydroxylase 2##BC093901|LOC283392|283392|uncharacterized LOC283392##BC093903|LOC283392|283392|uncharacterized LOC283392##AK095156|LOC283392|283392|uncharacterized LOC283392	0.093975	0.569097	CTCF.p2:-46:0.569
chr14	64107935	64108101	reg1013721.p1	4.129	+	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-97929	-	TSC_hg19_v1_chr14_-_64010080 AK313500 BC013154 NM_006246	-97944	-	TSC_hg19_v1_chr14_-_64010017 Z69029 AK299520 BC073873 AB209811 BC092477 L76703 BC064358	-98002	-	BX248008 NM_001008726	106	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	544	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	86731	-	BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AK313500|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC013154|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##NM_006246|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##Z69029|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AK299520|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC073873|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AB209811|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC092477|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##L76703|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC064358|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1	0.0	0.0	
chr7	110531289	110531459	reg1015455.p2	4.129	+	NM_001024607	-2006738	-	TSC_hg19_v1_chr7_+_108210317 AL080081 AB026908 AF083247 BC028912 AF115512 AF093824	-2321000	+	TSC_hg19_v1_chr7_+_108210292 AK092204	-2321076	+	NM_001099658 NM_001099660 NM_018334 AK001991 BC035133 TSC_hg19_v1_chr7_+_110731182	199749	+	AF359563 NM_032549 TSC_hg19_v1_chr7_-_111202539 AK311968 BC008497 NM_001244606	671110	-	TSC_hg19_v1_chr7_-_111428948 AK294820	897637	-	NM_001024607|C7orf66|154907|chromosome 7 open reading frame 66##AL080081|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AB026908|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF083247|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##BC028912|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF093824|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AK092204|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##NM_001099658|LRRN3|54674|leucine rich repeat neuronal 3##NM_001099660|LRRN3|54674|leucine rich repeat neuronal 3##NM_018334|LRRN3|54674|leucine rich repeat neuronal 3##AK001991|LRRN3|54674|leucine rich repeat neuronal 3##BC035133|LRRN3|54674|leucine rich repeat neuronal 3##AF359563|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_032549|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK311968|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC008497|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001244606|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK294820|DOCK4|9732|dedicator of cytokinesis 4	0.991026	0.0	denovo_WM_7:-70:0.473	denovo_WM_7:-71:0.473
chr10	22916581	22916668	reg1011698.p2	4.128	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-190625	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-282168	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-306459	+	AK294817 TSC_hg19_v1_chr10_-_23003038	86413	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	86866	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	300357	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	2.238654	0.0	denovo_WM_7:-95:0.207
chr19	4791386	4791491	reg1012810.p1	4.128	+	TSC_hg19_v1_chr19_+_4769144 AB058892 AB058893 BC090884 BC117294 BC117296 BC143983	-22277	+	TSC_hg19_v1_chr19_-_4723831 AF542510 AK122654 NM_139159 AF452102	-67594	-	BC037948 TSC_hg19_v1_chr19_-_4723798	-67638	-	NM_018708 TSC_hg19_v1_chr19_+_4791745	298	+	AK126532 AK315554 TSC_hg19_v1_chr19_+_4791756	318	+	TSC_hg19_v1_chr19_+_4791757 AK074232 BC004988 AY356352 EU446817 AB384759 AJ311359	374	+	AB058892|MIR7-3HG|284424|MIR7-3 host gene (non-protein coding)##AB058893|MIR7-3HG|284424|MIR7-3 host gene (non-protein coding)##BC090884|MIR7-3HG|284424|MIR7-3 host gene (non-protein coding)##BC117294|MIR7-3HG|284424|MIR7-3 host gene (non-protein coding)##BC117296|MIR7-3HG|284424|MIR7-3 host gene (non-protein coding)##AF542510|DPP9|91039|dipeptidyl-peptidase 9##AK122654|DPP9|91039|dipeptidyl-peptidase 9##NM_139159|DPP9|91039|dipeptidyl-peptidase 9##AF452102|DPP9|91039|dipeptidyl-peptidase 9##BC037948|DPP9|91039|dipeptidyl-peptidase 9##NM_018708|FEM1A|55527|fem-1 homolog a (C. elegans)##AK126532|FEM1A|55527|fem-1 homolog a (C. elegans)##AK315554|FEM1A|55527|fem-1 homolog a (C. elegans)##AK074232|FEM1A|55527|fem-1 homolog a (C. elegans)##BC004988|FEM1A|55527|fem-1 homolog a (C. elegans)##AY356352|FEM1A|55527|fem-1 homolog a (C. elegans)##EU446817|FEM1A|55527|fem-1 homolog a (C. elegans)##AJ311359|FEM1A|55527|fem-1 homolog a (C. elegans)	0.0	0.0	
chr2	197791731	197791810	reg1004707.p1	4.128	+	AB128038 AB527353 TSC_hg19_v1_chr2_-_197791382 BX648642 AK022439 NM_024989 BC040517	-326	-	BC137150 BC137151 AY358249 NM_213608	-116833	-	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	-127357	-	TSC_hg19_v1_chr2_-_198175411 CU677791 CU687782 AK124039	383612	-	TSC_hg19_v1_chr2_-_198175459 BC063622	383703	-	BC016985 TSC_hg19_v1_chr2_-_198175505 AK301209 NM_001195144 NM_153697	383749	-	AB128038|PGAP1|80055|post-GPI attachment to proteins 1##BX648642|PGAP1|80055|post-GPI attachment to proteins 1##AK022439|PGAP1|80055|post-GPI attachment to proteins 1##NM_024989|PGAP1|80055|post-GPI attachment to proteins 1##BC040517|PGAP1|80055|post-GPI attachment to proteins 1##BC137150|C2orf66|401027|chromosome 2 open reading frame 66##BC137151|C2orf66|401027|chromosome 2 open reading frame 66##AY358249|C2orf66|401027|chromosome 2 open reading frame 66##NM_213608|C2orf66|401027|chromosome 2 open reading frame 66##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK124039|ANKRD44|91526|ankyrin repeat domain 44##BC063622|ANKRD44|91526|ankyrin repeat domain 44##BC016985|ANKRD44|91526|ankyrin repeat domain 44##AK301209|ANKRD44|91526|ankyrin repeat domain 44##NM_001195144|ANKRD44|91526|ankyrin repeat domain 44##NM_153697|ANKRD44|91526|ankyrin repeat domain 44	0.0	0.0	
chr3	149376996	149377102	reg1013202.p1	4.128	+	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	-1314	-	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-184560	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-184647	+	AK022036 NM_001168278	44010	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	93190	-	TSC_hg19_v1_chr3_-_149470277 AF059618 BC001228 BC022206 AF125096 BC093077 NM_016094	93221	-	AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2##AF059618|COMMD2|51122|COMM domain containing 2##BC001228|COMMD2|51122|COMM domain containing 2##BC022206|COMMD2|51122|COMM domain containing 2##AF125096|COMMD2|51122|COMM domain containing 2##BC093077|COMMD2|51122|COMM domain containing 2##NM_016094|COMMD2|51122|COMM domain containing 2	0.995025	0.0	
chr4	144109404	144109513	reg1017884.p2	4.128	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	-3333	+	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	-3394	+	NM_001101669 NM_003866	-341855	-	NM_002039 NM_207123 AK289767 BC064848	148557	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	325270	+	AB384709 TSC_hg19_v1_chr4_+_144435139	325656	+	AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##NM_001101669|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##NM_003866|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	1.361649	0.0	denovo_WM_7:-8:0.646	denovo_WM_7:84:0.402
chr1	212082066	212082159	reg1011041.p2	4.127	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-77982	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-78364	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-233204	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	126778	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	126902	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	127006	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	0.880096	0.0	denovo_WM_7:36:0.861
chr5	158511501	158511681	reg1004128.p2	4.127	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1225501	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1327211	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1340851	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	14866	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	15151	-	AK304228 NM_001199382	123057	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.997913	0.0	denovo_WM_7:-3:0.817
chr9	9730247	9730342	reg1012806.p1	4.127	+	TSC_hg19_v1_chr9_+_8858136 AK094342	-872161	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-996375	-	TSC_hg19_v1_chr9_+_8713275 AY779046	-1017002	+	BC028038 NM_002839	882428	-	NM_000550 X51420 BC052608	2963131	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	3044722	+	BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##AY779046|RPL18A|6142|ribosomal protein L18a##BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150	0.0	0.0	
chr10	98656791	98656949	reg1012375.p1	4.126	+	TSC_hg19_v1_chr10_+_98592758 NM_032440 AL834245 AB058698	-64142	+	TSC_hg19_v1_chr10_-_98592186 AB593180	-64670	-	TSC_hg19_v1_chr10_+_98592020 NM_001170765 NM_001170766 AL832106 AK308356 BC053359	-64817	+	AK126886 BC024315 NM_015652 CU692918	84197	+	AY029183 AB383997 TSC_hg19_v1_chr10_-_98945570	288604	-	TSC_hg19_v1_chr10_-_98945606 BC146851	288725	-	NM_032440|LCOR|84458|ligand dependent nuclear receptor corepressor##AL834245|LCOR|84458|ligand dependent nuclear receptor corepressor##AB058698|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170765|LCOR|84458|ligand dependent nuclear receptor corepressor##NM_001170766|LCOR|84458|ligand dependent nuclear receptor corepressor##AL832106|LCOR|84458|ligand dependent nuclear receptor corepressor##BC053359|LCOR|84458|ligand dependent nuclear receptor corepressor##AK126886|C10orf12|26148|chromosome 10 open reading frame 12##BC024315|C10orf12|26148|chromosome 10 open reading frame 12##NM_015652|C10orf12|26148|chromosome 10 open reading frame 12##AY029183|SLIT1|6585|slit homolog 1 (Drosophila)##BC146851|SLIT1|6585|slit homolog 1 (Drosophila)	1.0044	0.0	denovo_WM_7:-2:0.496	denovo_WM_7:-3:0.496
chr18	8639042	8639149	reg1007206.p1	4.126	+	TSC_hg19_v1_chr18_+_8609684 AB590062 AX721075	-29349	+	TSC_hg19_v1_chr18_+_8609434 BC071600 BC098407 BC050338 NM_001025300	-29659	+	TSC_hg19_v1_chr18_+_7946885 AK294492	-692189	+	AK131528 NM_015210	78273	+	AB384528 TSC_hg19_v1_chr18_+_8718600	79429	+	TSC_hg19_v1_chr18_+_9102620 NM_021074	463527	+	BC071600|RAB12|201475|RAB12, member RAS oncogene family##BC098407|RAB12|201475|RAB12, member RAS oncogene family##BC050338|RAB12|201475|RAB12, member RAS oncogene family##NM_001025300|RAB12|201475|RAB12, member RAS oncogene family##AK294492|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##AK131528|CCDC165|23255|coiled-coil domain containing 165##NM_015210|CCDC165|23255|coiled-coil domain containing 165##NM_021074|NDUFV2|4729|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa	2.963073	0.0	denovo_WM_7:57:0.307	denovo_WM_7:58:0.552	denovo_WM_7:72:0.247	denovo_WM_7:73:0.674	denovo_WM_7:88:0.819
chr19	49298537	49298701	reg1016349.p1	4.126	+	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-39201	+	D87935 D87936 D87937 NM_000148	-39973	-	AB195682 BC034769 NM_182575 AK301750	-48524	-	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	15629	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	41155	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	41304	-	AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##AB195682|IZUMO1|284359|izumo sperm-egg fusion 1##BC034769|IZUMO1|284359|izumo sperm-egg fusion 1##NM_182575|IZUMO1|284359|izumo sperm-egg fusion 1##AK301750|IZUMO1|284359|izumo sperm-egg fusion 1##AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14	0.0	0.706918	CTCF.p2:-72:0.707
chr19	50050386	50050497	reg1008795.p2	4.126	+	TSC_hg19_v1_chr19_+_50031259 AY358423 BC013436	-19180	+	AY195859 NM_020650	-19567	+	TSC_hg19_v1_chr19_+_50016643 AK075510 BC020421 AK299124 AB463631 DQ893544 DQ893808 BT006828	-33809	+	BC047314 TSC_hg19_v1_chr19_-_50083811 BC009299 BC010077 NM_015953 AK092444 AX747549 AK291535 AK300720	33360	-	AF132959 TSC_hg19_v1_chr19_-_50083814	33373	-	NM_000951 BC026032	34166	+	AY358423|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##BC013436|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##AY195859|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##NM_020650|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##AK075510|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC020421|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##AK299124|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##DQ893544|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##DQ893808|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BT006828|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC047314|NOSIP|51070|nitric oxide synthase interacting protein##BC009299|NOSIP|51070|nitric oxide synthase interacting protein##BC010077|NOSIP|51070|nitric oxide synthase interacting protein##NM_015953|NOSIP|51070|nitric oxide synthase interacting protein##AK092444|NOSIP|51070|nitric oxide synthase interacting protein##AK291535|NOSIP|51070|nitric oxide synthase interacting protein##AK300720|NOSIP|51070|nitric oxide synthase interacting protein##AF132959|NOSIP|51070|nitric oxide synthase interacting protein##NM_000951|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##BC026032|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2	0.0	0.998055	CTCF.p2:-18:0.998
chr4	13655828	13655960	reg1010425.p1	4.126	+	TSC_hg19_v1_chr4_-_13629350 BC065546 BC043603 AF528529 NM_148894 BC087835	-26577	-	TSC_hg19_v1_chr4_-_13549425 BC035174 AK058104 BC048110 BC053955	-106480	-	AB463932 AF009801 EU446467 BC111966 NM_001189	-109819	-	BC039114 BC044764 BC047127 TSC_hg19_v1_chr4_-_15003743	1347815	-	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	1348101	-	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	1348403	+	BC065546|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC043603|BOD1L|259282|biorientation of chromosomes in cell division 1-like##AF528529|BOD1L|259282|biorientation of chromosomes in cell division 1-like##NM_148894|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC087835|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC035174|LOC285548|285548|uncharacterized LOC285548##AK058104|LOC285548|285548|uncharacterized LOC285548##BC048110|LOC285548|285548|uncharacterized LOC285548##BC053955|LOC285548|285548|uncharacterized LOC285548##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2##BC039114|LOC441009|441009|uncharacterized LOC441009##BC044764|LOC441009|441009|uncharacterized LOC441009##BC047127|LOC441009|441009|uncharacterized LOC441009##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2	0.0	0.669228	CTCF.p2:0:0.647
chr5	65266959	65267118	reg1012871.p1	4.126	+	TSC_hg19_v1_chr5_+_65222567 BC126464 BC144075	-44458	+	TSC_hg19_v1_chr5_+_65222508 AF276423 BC050692	-44514	+	NM_001006600 NM_001253697 NM_001253698 NM_001253699 NM_001253701 NM_018695 AF263744 AK295708 TSC_hg19_v1_chr5_+_65222405 AK304693	-44629	+	AK074288 TSC_hg19_v1_chr5_+_65372865	105767	+	TSC_hg19_v1_chr5_+_65440053 NM_001077199	173022	+	TSC_hg19_v1_chr5_+_65440162 AK308287 BC017000 AK091758 AX747166 BC047322	173131	+	BC126464|ERBB2IP|55914|erbb2 interacting protein##BC144075|ERBB2IP|55914|erbb2 interacting protein##AF276423|ERBB2IP|55914|erbb2 interacting protein##BC050692|ERBB2IP|55914|erbb2 interacting protein##NM_001006600|ERBB2IP|55914|erbb2 interacting protein##NM_001253697|ERBB2IP|55914|erbb2 interacting protein##NM_001253698|ERBB2IP|55914|erbb2 interacting protein##NM_001253699|ERBB2IP|55914|erbb2 interacting protein##NM_001253701|ERBB2IP|55914|erbb2 interacting protein##NM_018695|ERBB2IP|55914|erbb2 interacting protein##AF263744|ERBB2IP|55914|erbb2 interacting protein##AK295708|ERBB2IP|55914|erbb2 interacting protein##AK304693|ERBB2IP|55914|erbb2 interacting protein##AK074288|ERBB2IP|55914|erbb2 interacting protein##NM_001077199|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##AK308287|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##BC017000|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##AK091758|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1##BC047322|SREK1|140890|splicing regulatory glutamine/lysine-rich protein 1	0.994701	0.0	denovo_WM_7:42:0.686
chr15	30367757	30367868	reg1000826.p2	4.125	+	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	-253189	-	AK304758 TSC_hg19_v1_chr15_-_30114336	-253470	-	NM_015307	-504886	-	BC101345 BC101346 BC101347 BC101348 AK292984 AF029838 AF029839 NM_139320 NM_148911	317900	-	TSC_hg19_v1_chr15_+_30918372 BC071990	550574	+	BC105788 NM_001039841	551066	+	BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##BC101345|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101346|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101347|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC101348|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AK292984|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029838|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##AF029839|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_139320|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##NM_148911|CHRFAM7A|89832|CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion##BC071990|ARHGAP11B|89839|Rho GTPase activating protein 11B##BC105788|ARHGAP11B|89839|Rho GTPase activating protein 11B##NM_001039841|ARHGAP11B|89839|Rho GTPase activating protein 11B	0.998968	0.0	
chr16	81856811	81856951	reg1000866.p5	4.125	+	TSC_hg19_v1_chr16_+_81812926 BC007565 BC011772 BC014561 BC018646 M37238 X14034	-43951	+	TSC_hg19_v1_chr16_+_81812901 AB208914	-43979	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	-43984	+	BC019670 AK315652 AK026740 NM_145168	188187	-	TSC_hg19_v1_chr16_+_82068882 NM_002153 AK223001 AK313109	211980	+	TSC_hg19_v1_chr16_+_82068927 BC009581 BC059170 L11708	212051	+	BC007565|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC011772|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC014561|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC018646|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##M37238|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##X14034|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##AB208914|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)##BC019670|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK315652|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##AK026740|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_145168|SDR42E1|93517|short chain dehydrogenase/reductase family 42E, member 1##NM_002153|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK223001|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##AK313109|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC009581|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##BC059170|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2##L11708|HSD17B2|3294|hydroxysteroid (17-beta) dehydrogenase 2	0.0	0.0	
chr21	15468695	15468831	reg1015752.p2	4.125	+	TSC_hg19_v1_chr21_+_15399763 BC070147 BC024173 BC048201	-68999	+	AY172978 NM_174981 AY465173	-486264	+	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	-4369864	-	AB463838 AY197607 NM_198996	110485	-	NM_144770 AK091331 AX746917 AF519623 BC030196 CU688832 AY077695	119734	+	CU690336 TSC_hg19_v1_chr21_-_15755457 AK299004 AK312396 AK128540 AK223282 BC036370 U04735 NM_006948	286710	-	AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B##BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AY197607|LIPI|149998|lipase, member I##NM_198996|LIPI|149998|lipase, member I##NM_144770|RBM11|54033|RNA binding motif protein 11##AK091331|RBM11|54033|RNA binding motif protein 11##AF519623|RBM11|54033|RNA binding motif protein 11##BC030196|RBM11|54033|RNA binding motif protein 11##AY077695|RBM11|54033|RNA binding motif protein 11##AK299004|HSPA13|6782|heat shock protein 70kDa family, member 13##AK312396|HSPA13|6782|heat shock protein 70kDa family, member 13##AK128540|HSPA13|6782|heat shock protein 70kDa family, member 13##AK223282|HSPA13|6782|heat shock protein 70kDa family, member 13##BC036370|HSPA13|6782|heat shock protein 70kDa family, member 13##U04735|HSPA13|6782|heat shock protein 70kDa family, member 13##NM_006948|HSPA13|6782|heat shock protein 70kDa family, member 13	0.0	0.0	
chr2	70296096	70296186	reg1006581.p1	4.125	+	AK055994 NM_152792	-106745	-	TSC_hg19_v1_chr2_+_70142307 L06895 BC113531 BC117260 BC143831 BC143832 BC144601 BC069377 BC069433 AB463858 CR536495 CR541692 CU686788 HQ258749	-153759	+	TSC_hg19_v1_chr2_+_70142240 AK301088 AK312734	-153891	+	TSC_hg19_v1_chr2_-_70313405 AK056822	17267	-	TSC_hg19_v1_chr2_-_70314146 BC040598	17972	-	TSC_hg19_v1_chr2_+_70314613 NM_006196	18453	+	AK055994|ASPRV1|151516|aspartic peptidase, retroviral-like 1##NM_152792|ASPRV1|151516|aspartic peptidase, retroviral-like 1##L06895|MXD1|4084|MAX dimerization protein 1##BC113531|MXD1|4084|MAX dimerization protein 1##BC117260|MXD1|4084|MAX dimerization protein 1##BC143831|MXD1|4084|MAX dimerization protein 1##BC143832|MXD1|4084|MAX dimerization protein 1##BC144601|MXD1|4084|MAX dimerization protein 1##BC069377|MXD1|4084|MAX dimerization protein 1##BC069433|MXD1|4084|MAX dimerization protein 1##CR536495|MXD1|4084|MAX dimerization protein 1##CR541692|MXD1|4084|MAX dimerization protein 1##HQ258749|MXD1|4084|MAX dimerization protein 1##AK301088|MXD1|4084|MAX dimerization protein 1##AK312734|MXD1|4084|MAX dimerization protein 1##AK056822|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##BC040598|PCBP1-AS1|400960|PCBP1 antisense RNA 1 (non-protein coding)##NM_006196|PCBP1|5093|poly(rC) binding protein 1	0.999644	0.0	
chr2	86081210	86081370	reg1007856.p2	4.125	+	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-100285	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-159810	+	NM_000542 NM_198843	-185427	-	AY152815 NM_001042437	13502	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	34796	-	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	251693	-	NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa	0.0	0.0	
chr5	171612162	171612249	reg1012239.p2	4.125	+	BC026213 NM_012300 NM_033644 NM_033645	-178329	-	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	-178561	-	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	-178677	-	AB015718 TSC_hg19_v1_chr5_-_171615170	2933	-	AK307943 TSC_hg19_v1_chr5_-_171615203	2998	-	TSC_hg19_v1_chr5_-_171615241 BC070077 AK313350	3068	-	BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11##AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##AB015718|STK10|6793|serine/threonine kinase 10##AK307943|STK10|6793|serine/threonine kinase 10##BC070077|STK10|6793|serine/threonine kinase 10##AK313350|STK10|6793|serine/threonine kinase 10	0.423861	0.0	denovo_WM_7:79:0.210
chr6	109781568	109781662	reg1018313.p1	4.125	+	TSC_hg19_v1_chr6_-_109777182 AB048948 NM_001159291 NM_022765	-4435	-	BC042144 TSC_hg19_v1_chr6_-_109777095	-4525	-	AK225049 TSC_hg19_v1_chr6_-_109776948 AK025392	-4664	-	TSC_hg19_v1_chr6_-_109804420 AK309697 BC036731	22757	-	TSC_hg19_v1_chr6_-_109804443 AB007901 NM_001164313 NM_014797	22844	-	TSC_hg19_v1_chr6_-_110012389 AK092103 AX747355 AK315561 AK055538 AL832162 NM_001145128 NM_145025 BC022031	230768	-	AB048948|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##NM_001159291|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##NM_022765|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##BC042144|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##AK225049|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##AK025392|MICAL1|64780|microtubule associated monoxygenase, calponin and LIM domain containing 1##AK309697|ZBTB24|9841|zinc finger and BTB domain containing 24##BC036731|ZBTB24|9841|zinc finger and BTB domain containing 24##AB007901|ZBTB24|9841|zinc finger and BTB domain containing 24##NM_001164313|ZBTB24|9841|zinc finger and BTB domain containing 24##NM_014797|ZBTB24|9841|zinc finger and BTB domain containing 24##AK315561|AKD1|221264|adenylate kinase domain containing 1##AK055538|AKD1|221264|adenylate kinase domain containing 1##AL832162|AKD1|221264|adenylate kinase domain containing 1##NM_001145128|AKD1|221264|adenylate kinase domain containing 1##NM_145025|AKD1|221264|adenylate kinase domain containing 1##BC022031|AKD1|221264|adenylate kinase domain containing 1	0.99232	0.0	
chr15	72519222	72519396	reg1011627.p1	4.124	+	Z36786 TSC_hg19_v1_chr15_-_72501152 BC019265	-18185	-	BC038451 AK095072 NM_001012642 TSC_hg19_v1_chr15_-_72490157	-29174	-	AF308450 TSC_hg19_v1_chr15_+_72410743 BC031411	-108561	+	AK309781 NM_001206799	2753	-	TSC_hg19_v1_chr15_-_72523471 AK294315	4153	-	TSC_hg19_v1_chr15_-_72523531 BC023592 BC035198 AK092369 BC096823 M26252 AK299413 AK297951 AK222927 AK300800 AK312253 BC007640	4198	-	BC019265|PKM2|5315|pyruvate kinase, muscle##BC038451|GRAMD2|196996|GRAM domain containing 2##AK095072|GRAMD2|196996|GRAM domain containing 2##NM_001012642|GRAMD2|196996|GRAM domain containing 2##AF308450|SENP8|123228|SUMO/sentrin specific peptidase family member 8##BC031411|SENP8|123228|SUMO/sentrin specific peptidase family member 8##AK309781|PKM2|5315|pyruvate kinase, muscle##NM_001206799|PKM2|5315|pyruvate kinase, muscle##AK294315|PKM2|5315|pyruvate kinase, muscle##BC023592|PKM2|5315|pyruvate kinase, muscle##BC035198|PKM2|5315|pyruvate kinase, muscle##AK092369|PKM2|5315|pyruvate kinase, muscle##BC096823|PKM2|5315|pyruvate kinase, muscle##M26252|PKM2|5315|pyruvate kinase, muscle##AK299413|PKM2|5315|pyruvate kinase, muscle##AK297951|PKM2|5315|pyruvate kinase, muscle##AK222927|PKM2|5315|pyruvate kinase, muscle##AK300800|PKM2|5315|pyruvate kinase, muscle##AK312253|PKM2|5315|pyruvate kinase, muscle##BC007640|PKM2|5315|pyruvate kinase, muscle	0.0	0.0	
chr2	201733834	201734014	reg1003636.p2	4.124	+	TSC_hg19_v1_chr2_-_201729384 AK307301 BC028573 AK289365 NM_004071	-4503	-	TSC_hg19_v1_chr2_-_201729351 BC028149 BC031549	-4568	-	TSC_hg19_v1_chr2_-_201729241 AK294295 NM_001162407	-4662	-	TSC_hg19_v1_chr2_-_201753860 AF146799 AK297804 AF271652 AF251049 NM_032472 NM_130906 AF414127 AK027315 AY257468 BC007693	19963	-	NM_001136039 NM_001142355 TSC_hg19_v1_chr2_+_201754095 AF060513 AF283538 AK314709 NM_021824 AK225905 AB038949 AK023378 AF182416	20194	+	AY251943 AY251944 BC007654 NM_001142356 CU675739 DQ896612 AB463931 AL834430	22795	+	AK307301|CLK1|1195|CDC-like kinase 1##BC028573|CLK1|1195|CDC-like kinase 1##AK289365|CLK1|1195|CDC-like kinase 1##NM_004071|CLK1|1195|CDC-like kinase 1##BC028149|CLK1|1195|CDC-like kinase 1##BC031549|CLK1|1195|CDC-like kinase 1##AK294295|CLK1|1195|CDC-like kinase 1##NM_001162407|CLK1|1195|CDC-like kinase 1##AF146799|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AK297804|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AF271652|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AF251049|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##NM_032472|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##NM_130906|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AF414127|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##AY257468|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##BC007693|PPIL3|53938|peptidylprolyl isomerase (cyclophilin)-like 3##NM_001136039|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001142355|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF060513|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF283538|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK314709|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_021824|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK225905|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AB038949|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AK023378|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AF182416|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AY251943|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AY251944|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##BC007654|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##NM_001142356|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##DQ896612|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)##AL834430|NIF3L1|60491|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)	0.0	0.0	
chr4	36244801	36244879	reg1004839.p1	4.124	+	TSC_hg19_v1_chr4_+_30722465 AB006756	-5522381	+	AB006757 TSC_hg19_v1_chr4_+_30722198	-5522646	+	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	-5522841	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	1197	-	AK131492 NM_001136536 AK304357 AK316523	38406	+	BC157885 NM_001170700	40803	+	AB006756|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1	0.011845	0.0	
chr5	61581321	61581437	reg1011491.p2	4.124	+	AK094862 NM_173667	-647744	+	TSC_hg19_v1_chr5_+_60628085 NM_020928	-953281	+	TSC_hg19_v1_chr5_-_60458296 BC103711 BX648459 BC066550 BX538015 AK291180 NM_001048249	-1123112	-	TSC_hg19_v1_chr5_+_61601970 NM_001098511 NM_001243952 NM_001243953 NM_004520	20594	+	TSC_hg19_v1_chr5_+_61602066 BC047544	20703	+	TSC_hg19_v1_chr5_+_61602278 AK297347 AK307880 EF560716 EF560728 EU832810 GQ129246 AK315866	20891	+	AK094862|C5orf64|285668|chromosome 5 open reading frame 64##NM_173667|C5orf64|285668|chromosome 5 open reading frame 64##NM_020928|ZSWIM6|57688|zinc finger, SWIM-type containing 6##BC103711|C5orf43|643155|chromosome 5 open reading frame 43##BX648459|C5orf43|643155|chromosome 5 open reading frame 43##BC066550|C5orf43|643155|chromosome 5 open reading frame 43##BX538015|C5orf43|643155|chromosome 5 open reading frame 43##AK291180|C5orf43|643155|chromosome 5 open reading frame 43##NM_001048249|C5orf43|643155|chromosome 5 open reading frame 43##NM_001098511|KIF2A|3796|kinesin heavy chain member 2A##NM_001243952|KIF2A|3796|kinesin heavy chain member 2A##NM_001243953|KIF2A|3796|kinesin heavy chain member 2A##NM_004520|KIF2A|3796|kinesin heavy chain member 2A##BC047544|KIF2A|3796|kinesin heavy chain member 2A##AK297347|KIF2A|3796|kinesin heavy chain member 2A##AK307880|KIF2A|3796|kinesin heavy chain member 2A##EF560716|KIF2A|3796|kinesin heavy chain member 2A##EF560728|KIF2A|3796|kinesin heavy chain member 2A##EU832810|KIF2A|3796|kinesin heavy chain member 2A##GQ129246|KIF2A|3796|kinesin heavy chain member 2A##AK315866|KIF2A|3796|kinesin heavy chain member 2A	0.99892	0.0	denovo_WM_7:-35:0.314	denovo_WM_7:-37:0.539
chr7	1552755	1552837	reg1001321.p2	4.124	+	TSC_hg19_v1_chr7_-_1544019 AK093809 AX748318 NM_001080453	-8763	-	TSC_hg19_v1_chr7_-_1499107 AK027124 NM_182924	-53689	-	CU691530 EU832111 EU832205 AK074068 BC037988 TSC_hg19_v1_chr7_-_1499102	-53763	-	TSC_hg19_v1_chr7_+_1570337 AF059194 NM_002360	17548	+	TSC_hg19_v1_chr7_+_1577118 AK092414	24326	+	TSC_hg19_v1_chr7_+_1580027 BC143040 BC143041 BC148194	27233	+	NM_001080453|INTS1|26173|integrator complex subunit 1##AK027124|MICALL2|79778|MICAL-like 2##NM_182924|MICALL2|79778|MICAL-like 2##EU832111|MICALL2|79778|MICAL-like 2##EU832205|MICALL2|79778|MICAL-like 2##AK074068|MICALL2|79778|MICAL-like 2##BC037988|MICALL2|79778|MICAL-like 2##AF059194|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##NM_002360|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##AK092414|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC143040|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC143041|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC148194|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	0.0	0.022256	
chr11	106914370	106914480	reg1015885.p1	4.123	+	BC085622 TSC_hg19_v1_chr11_-_106889260 BC130484 BC130488 BC144033 NM_000855 X63282 Z50053	-25337	-	NM_152433 NM_198439	-965961	-	AF136978 AF151057 AF151838 AF302110 NM_015423 TSC_hg19_v1_chr11_+_105948388 BC016728 AK312529 BC015470 AK293362 AB463408 CU677695 DQ891342 DQ894524	-966060	+	AK293001 TSC_hg19_v1_chr11_-_107328552 BX649022 BX647832 BC107418 BC070142 BX648704 AK126881 NM_152434	414114	-	AK293603 TSC_hg19_v1_chr11_-_107436464 BC015183 AK304413 AB218768 AK095523 NM_138775	522019	-	TSC_hg19_v1_chr11_+_107461813 AK297351 NM_001130037 NM_018712	547386	+	BC130484|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC130488|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##BC144033|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_000855|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##X63282|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##Z50053|GUCY1A2|2977|guanylate cyclase 1, soluble, alpha 2##NM_152433|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##NM_198439|KBTBD3|143879|kelch repeat and BTB (POZ) domain containing 3##AF136978|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151057|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF151838|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AF302110|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##NM_015423|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC016728|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK312529|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##BC015470|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293362|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ891342|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##DQ894524|AASDHPPT|60496|aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase##AK293001|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX649022|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX647832|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC107418|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BC070142|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##BX648704|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##AK126881|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##NM_152434|CWF19L2|143884|CWF19-like 2, cell cycle control (S. pombe)##AK293603|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##BC015183|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK304413|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AB218768|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK095523|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##NM_138775|ALKBH8|91801|alkB, alkylation repair homolog 8 (E. coli)##AK297351|ELMOD1|55531|ELMO/CED-12 domain containing 1##NM_001130037|ELMOD1|55531|ELMO/CED-12 domain containing 1##NM_018712|ELMOD1|55531|ELMO/CED-12 domain containing 1	0.0	0.0	
chr14	93117663	93117743	reg1014579.p2	4.123	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-137744	+	NM_153646 AF520704 AF520705 BC069653	-327527	+	AK295059 NM_153647	-328167	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	933	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	1120	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	97256	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.0	0.0	
chr16	57728338	57728474	reg1013664.p1	4.123	+	AK172801 NM_170776 BC064508 AB049169 AK310124 AK301258 BC044222 AY140959	-26199	+	NM_001145774 AK297236 AK311156 TSC_hg19_v1_chr16_+_57673403 BC013207	-55089	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	-65952	+	TSC_hg19_v1_chr16_+_57728717 NM_032269 AK292558 BC030661 BC036667 AK093035 AX747872	323	+	TSC_hg19_v1_chr16_+_57769662 NM_005886	41239	+	TSC_hg19_v1_chr16_+_57769741 AB209250	41318	+	AK172801|GPR97|222487|G protein-coupled receptor 97##NM_170776|GPR97|222487|G protein-coupled receptor 97##BC064508|GPR97|222487|G protein-coupled receptor 97##AB049169|GPR97|222487|G protein-coupled receptor 97##AK310124|GPR97|222487|G protein-coupled receptor 97##AK301258|GPR97|222487|G protein-coupled receptor 97##BC044222|GPR97|222487|G protein-coupled receptor 97##AY140959|GPR97|222487|G protein-coupled receptor 97##NM_001145774|GPR56|9289|G protein-coupled receptor 56##AK297236|GPR56|9289|G protein-coupled receptor 56##AK311156|GPR56|9289|G protein-coupled receptor 56##BC013207|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56##NM_032269|CCDC135|84229|coiled-coil domain containing 135##AK292558|CCDC135|84229|coiled-coil domain containing 135##BC030661|CCDC135|84229|coiled-coil domain containing 135##BC036667|CCDC135|84229|coiled-coil domain containing 135##AK093035|CCDC135|84229|coiled-coil domain containing 135##NM_005886|KATNB1|10300|katanin p80 (WD repeat containing) subunit B 1##AB209250|KATNB1|10300|katanin p80 (WD repeat containing) subunit B 1	0.99642	0.0	
chr17	28069233	28069391	reg1010658.p1	4.123	+	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-119461	-	AK096431 NM_032854	-120920	-	TSC_hg19_v1_chr17_+_27920483 NM_152345	-148810	+	TSC_hg19_v1_chr17_-_28088446 BC011636	19146	-	AK302745 AK303060 NM_001145053 AK299608	187584	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	187821	-	BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##NM_152345|ANKRD13B|124930|ankyrin repeat domain 13B##BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)	2.613672	0.0	denovo_WM_7:-4:0.767	denovo_WM_7:-26:0.597	denovo_WM_7:33:0.310	denovo_WM_7:34:0.310	denovo_WM_7:35:0.310
chr19	58280812	58280992	reg1012492.p2	4.123	+	TSC_hg19_v1_chr19_+_58258208 BX957217 CR749390 CR936802 AK055448	-22690	+	TSC_hg19_v1_chr19_+_58258182 AK299680 NM_173632	-22730	+	EU446533 BC025728 TSC_hg19_v1_chr19_-_58239010 AK027159 AK310074 AK293680 AK091421 AK225665 NM_024833	-41947	-	AK302151 TSC_hg19_v1_chr19_+_58281007 NM_001077426 NM_001204814 NM_017652 AK095993 BC027922 AK000077 AB074270	115	+	BC051325 TSC_hg19_v1_chr19_+_58281063 AK300419 BC124558 BC041660 AB527919	227	+	AK097041 AK293445 NM_024762	45378	-	BX957217|ZNF776|284309|zinc finger protein 776##CR749390|ZNF776|284309|zinc finger protein 776##CR936802|ZNF776|284309|zinc finger protein 776##AK299680|ZNF776|284309|zinc finger protein 776##NM_173632|ZNF776|284309|zinc finger protein 776##EU446533|ZNF671|79891|zinc finger protein 671##BC025728|ZNF671|79891|zinc finger protein 671##AK027159|ZNF671|79891|zinc finger protein 671##AK310074|ZNF671|79891|zinc finger protein 671##AK293680|ZNF671|79891|zinc finger protein 671##AK091421|ZNF671|79891|zinc finger protein 671##AK225665|ZNF671|79891|zinc finger protein 671##NM_024833|ZNF671|79891|zinc finger protein 671##AK302151|ZNF586|54807|zinc finger protein 586##NM_001077426|ZNF586|54807|zinc finger protein 586##NM_001204814|ZNF586|54807|zinc finger protein 586##NM_017652|ZNF586|54807|zinc finger protein 586##AK095993|ZNF586|54807|zinc finger protein 586##BC027922|ZNF586|54807|zinc finger protein 586##AK000077|ZNF586|54807|zinc finger protein 586##AB074270|ZNF586|54807|zinc finger protein 586##BC051325|ZNF586|54807|zinc finger protein 586##AK300419|ZNF586|54807|zinc finger protein 586##BC124558|ZNF586|54807|zinc finger protein 586##BC041660|ZNF586|54807|zinc finger protein 586##AK097041|ZNF552|79818|zinc finger protein 552##AK293445|ZNF552|79818|zinc finger protein 552##NM_024762|ZNF552|79818|zinc finger protein 552	0.0	0.0	
chr2	137243535	137243613	reg1012489.p1	4.123	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-367898	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-369776	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-500358	-	TSC_hg19_v1_chr2_+_137523114 AK299929	279542	+	NM_001080427	504887	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1478360	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	2.041025	0.0	
chr2	55065831	55065918	reg1010369.p1	4.123	+	NM_001039753	-113726	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	-280309	+	TSC_hg19_v1_chr2_+_54684338 BC032061	-381507	+	TSC_hg19_v1_chr2_-_55199899 BC131571	134034	-	AJ251385 AM392753 AM393122 AM393280 AM393537 BC139928 DQ778739 AF087901 BC014366 TSC_hg19_v1_chr2_-_55237387 BC007109 AF177332 AF132048 BC001035 AF077050 AF125103 NM_007008 AY102276	171498	-	AK302741 AF333336 NM_207521 AY123248	210436	-	NM_001039753|EML6|400954|echinoderm microtubule associated protein like 6##AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AJ251385|RTN4|57142|reticulon 4##AM392753|RTN4|57142|reticulon 4##AM393122|RTN4|57142|reticulon 4##AM393280|RTN4|57142|reticulon 4##AM393537|RTN4|57142|reticulon 4##BC139928|RTN4|57142|reticulon 4##DQ778739|RTN4|57142|reticulon 4##AF087901|RTN4|57142|reticulon 4##BC014366|RTN4|57142|reticulon 4##BC007109|RTN4|57142|reticulon 4##AF177332|RTN4|57142|reticulon 4##AF132048|RTN4|57142|reticulon 4##BC001035|RTN4|57142|reticulon 4##AF077050|RTN4|57142|reticulon 4##AF125103|RTN4|57142|reticulon 4##NM_007008|RTN4|57142|reticulon 4##AY102276|RTN4|57142|reticulon 4##AK302741|RTN4|57142|reticulon 4##AF333336|RTN4|57142|reticulon 4##NM_207521|RTN4|57142|reticulon 4##AY123248|RTN4|57142|reticulon 4	0.0	0.994635	CTCF.p2:4:0.995
chr2	87813734	87813883	reg1014074.p1	4.123	+	TSC_hg19_v1_chr2_+_87755060 AK312010	-58748	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	-58791	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-510476	-	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	233811	+	AK302429 NM_001078170	311477	-	CR749330 NM_001024457	471500	-	AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1##AK302429|RGPD2|729857|RANBP2-like and GRIP domain containing 2##NM_001078170|RGPD2|729857|RANBP2-like and GRIP domain containing 2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1	0.593522	0.0	denovo_WM_7:50:0.341	denovo_WM_7:51:0.220
chr9	131464047	131464227	reg1016148.p2	4.123	+	AK300609 NM_001248001	-11884	+	TSC_hg19_v1_chr9_+_131451848 AM392720 AM392742 AM393175 AM393446 DQ894408 EU176263 CU689520 M93651 AY349172 CR536543 CR542050 U51924	-12275	+	TSC_hg19_v1_chr9_+_131451830 BC032749 X75091 EF534308	-12303	+	TSC_hg19_v1_chr9_+_131464821 BC023327 NM_013355	706	+	TSC_hg19_v1_chr9_+_131465139 BC032794 BC041581 BC062558 EU831416 EU831509	963	+	CU690564 BC009280 BC048251 TSC_hg19_v1_chr9_-_131486407 AK027430 AK075332 AK315746 AK092843 AX747760 NM_032799	22252	-	AK300609|SET|6418|SET nuclear oncogene##NM_001248001|SET|6418|SET nuclear oncogene##AM392720|SET|6418|SET nuclear oncogene##AM392742|SET|6418|SET nuclear oncogene##AM393175|SET|6418|SET nuclear oncogene##AM393446|SET|6418|SET nuclear oncogene##DQ894408|SET|6418|SET nuclear oncogene##EU176263|SET|6418|SET nuclear oncogene##M93651|SET|6418|SET nuclear oncogene##AY349172|SET|6418|SET nuclear oncogene##CR536543|SET|6418|SET nuclear oncogene##CR542050|SET|6418|SET nuclear oncogene##U51924|SET|6418|SET nuclear oncogene##BC032749|SET|6418|SET nuclear oncogene##X75091|SET|6418|SET nuclear oncogene##EF534308|SET|6418|SET nuclear oncogene##BC023327|PKN3|29941|protein kinase N3##NM_013355|PKN3|29941|protein kinase N3##BC032794|PKN3|29941|protein kinase N3##BC041581|PKN3|29941|protein kinase N3##BC062558|PKN3|29941|protein kinase N3##EU831416|PKN3|29941|protein kinase N3##EU831509|PKN3|29941|protein kinase N3##BC009280|ZDHHC12|84885|zinc finger, DHHC-type containing 12##BC048251|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK027430|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK075332|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK315746|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK092843|ZDHHC12|84885|zinc finger, DHHC-type containing 12##NM_032799|ZDHHC12|84885|zinc finger, DHHC-type containing 12	1.456074	0.0	denovo_WM_7:86:0.471	denovo_WM_7:101:0.516
chr10	125919525	125919643	reg1016686.p1	4.122	+	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	-66431	-	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	-67685	-	BC137492 BC146862 AY358565 NM_198148	-268088	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	187889	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	187934	-	NM_001146340 TSC_hg19_v1_chr10_-_126138606	218993	-	BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##NM_001146340|NKX1-2|390010|NK1 homeobox 2	0.0	0.0	
chr12	113821837	113821935	reg1007328.p1	4.122	+	TSC_hg19_v1_chr12_+_113796394 BC030618	-25500	+	BC002929 BC071832 NM_001159727 NM_173542 TSC_hg19_v1_chr12_+_113796372	-25515	+	TSC_hg19_v1_chr12_-_113772942 NM_024959 AK056179	-48961	-	J05037 TSC_hg19_v1_chr12_-_113841693 AK292760 BC020750 NM_006843	19788	-	TSC_hg19_v1_chr12_+_113860217 BC009849 NM_138432 BC091479 AF134473	38311	+	AF291181 NM_022363	87990	-	BC030618|PLBD2|196463|phospholipase B domain containing 2##NM_001159727|PLBD2|196463|phospholipase B domain containing 2##NM_173542|PLBD2|196463|phospholipase B domain containing 2##NM_024959|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##AK056179|SLC24A6|80024|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6##J05037|SDS|10993|serine dehydratase##AK292760|SDS|10993|serine dehydratase##BC020750|SDS|10993|serine dehydratase##NM_006843|SDS|10993|serine dehydratase##BC009849|SDSL|113675|serine dehydratase-like##NM_138432|SDSL|113675|serine dehydratase-like##BC091479|SDSL|113675|serine dehydratase-like##AF134473|SDSL|113675|serine dehydratase-like##AF291181|LHX5|64211|LIM homeobox 5##NM_022363|LHX5|64211|LIM homeobox 5	0.99751	0.944145	CTCF.p2:-24:0.812
chr8	126346878	126347058	reg1010989.p2	4.122	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-242871	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-242911	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-242946	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	95611	+	TSC_hg19_v1_chr8_-_126963395 BX648371	616445	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1223587	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	1.980085	0.0	denovo_WM_7:49:0.812	denovo_WM_7:64:0.205	denovo_WM_7:65:0.213	denovo_WM_7:66:0.220	denovo_WM_7:67:0.356
chr10	6244889	6244955	reg1014916.p2	4.121	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-46	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-58010	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-58038	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	377339	-	TSC_hg19_v1_chr10_+_6622460 AY007155	377558	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1206328	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.0	
chr11	26003606	26003763	reg1009953.p1	4.121	+	AK127695 NM_001009909 NM_001252008 NM_001252010 TSC_hg19_v1_chr11_+_24518540 AY164460 AL832641 AY358386 BC132829 BC144177 AK309077 BC151234 HQ258382	-1485035	+	NM_001195637	-3121713	-	TSC_hg19_v1_chr11_-_22851382 AL833119 AF527534 NM_148893	-3152339	-	NM_031418 AK302659	350046	+	AK128337 AJ417818 AJ507429 BC058007 AY358668 BC020912 NM_001135091 NM_001135092 NM_145650	590056	-	BC049207 NM_178498	739875	-	AK127695|LUZP2|338645|leucine zipper protein 2##NM_001009909|LUZP2|338645|leucine zipper protein 2##NM_001252008|LUZP2|338645|leucine zipper protein 2##NM_001252010|LUZP2|338645|leucine zipper protein 2##AY164460|LUZP2|338645|leucine zipper protein 2##AL832641|LUZP2|338645|leucine zipper protein 2##AY358386|LUZP2|338645|leucine zipper protein 2##BC132829|LUZP2|338645|leucine zipper protein 2##BC144177|LUZP2|338645|leucine zipper protein 2##AK309077|LUZP2|338645|leucine zipper protein 2##BC151234|LUZP2|338645|leucine zipper protein 2##HQ258382|LUZP2|338645|leucine zipper protein 2##NM_001195637|LOC100500938|100500938|uncharacterized LOC100500938##AL833119|SVIP|258010|small VCP/p97-interacting protein##AF527534|SVIP|258010|small VCP/p97-interacting protein##NM_148893|SVIP|258010|small VCP/p97-interacting protein##NM_031418|ANO3|63982|anoctamin 3##AK302659|ANO3|63982|anoctamin 3##AK128337|MUC15|143662|mucin 15, cell surface associated##AJ417818|MUC15|143662|mucin 15, cell surface associated##AJ507429|MUC15|143662|mucin 15, cell surface associated##BC058007|MUC15|143662|mucin 15, cell surface associated##AY358668|MUC15|143662|mucin 15, cell surface associated##BC020912|MUC15|143662|mucin 15, cell surface associated##NM_001135091|MUC15|143662|mucin 15, cell surface associated##NM_001135092|MUC15|143662|mucin 15, cell surface associated##NM_145650|MUC15|143662|mucin 15, cell surface associated##BC049207|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12##NM_178498|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12	0.994822	0.153777	denovo_WM_7:-43:0.607	denovo_WM_7:-44:0.311
chr15	93168758	93168938	reg1010174.p1	4.121	+	AK057393 NM_153040	-153942	+	TSC_hg19_v1_chr15_+_92937110 NM_006011 AK313924 BC069584 BC096202 BC096203 BC096204 BC096205 U82762 U33551	-231649	+	TSC_hg19_v1_chr15_+_92397563 AK097797 AK310306	-771281	+	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	30031	-	BC110328 TSC_hg19_v1_chr15_-_93277463	108541	-	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	274638	+	AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##NM_006011|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK313924|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC069584|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096202|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096203|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096204|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##BC096205|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U82762|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##U33551|ST8SIA2|8128|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2##AK097797|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##AK310306|SLCO3A1|28232|solute carrier organic anion transporter family, member 3A1##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##BC110328|FAM174B|400451|family with sequence similarity 174, member B##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2	0.0	0.0	
chr17	74812768	74812866	reg1011904.p2	4.121	+	TSC_hg19_v1_chr17_+_74734111 AK308058 AF015184 AK000233	-78664	+	AF015183 NM_001242532 NM_001242533 NM_001242535 NM_001242536 NM_001242537 NM_024311	-79292	+	TSC_hg19_v1_chr17_-_74733465 AK124792 NM_001195427 NM_003016	-79361	-	TSC_hg19_v1_chr17_+_74864556 AK057861 AB235153 BC041577 NM_001199172 NM_144677 BC062354	51849	+	AB114297 NM_198955 BC144361	55943	+	NM_001204408 BX648413 TSC_hg19_v1_chr17_+_75084834 FM995495 FM995497 FM995498 FN357117 FN357118 FN357119 FN357120 FN357121 FN357125 FN357122 FN357123 FN357126	271980	+	AK308058|MFSD11|79157|major facilitator superfamily domain containing 11##AF015184|MFSD11|79157|major facilitator superfamily domain containing 11##AK000233|MFSD11|79157|major facilitator superfamily domain containing 11##AF015183|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242532|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242533|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242535|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242536|MFSD11|79157|major facilitator superfamily domain containing 11##NM_001242537|MFSD11|79157|major facilitator superfamily domain containing 11##NM_024311|MFSD11|79157|major facilitator superfamily domain containing 11##AK124792|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_001195427|SRSF2|6427|serine/arginine-rich splicing factor 2##NM_003016|SRSF2|6427|serine/arginine-rich splicing factor 2##AB235153|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC041577|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001199172|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_144677|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC062354|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##AB114297|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_198955|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##BC144361|MGAT5B|146664|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B##NM_001204408|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BX648413|LINC00338|654434|long intergenic non-protein coding RNA 338##FM995495|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FM995497|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FM995498|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##FN357117|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357118|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357121|LINC00338|654434|long intergenic non-protein coding RNA 338##FN357125|LINC00338|654434|long intergenic non-protein coding RNA 338	0.0	0.73517	CTCF.p2:-15:0.735
chr20	53297530	53297638	reg1016205.p1	4.121	+	TSC_hg19_v1_chr20_+_53092131 BC008992 NM_018431 AF132732 AK313222	-205370	+	TSC_hg19_v1_chr20_+_52824630 AK312059 BC010953 U41816	-472947	+	TSC_hg19_v1_chr20_+_52824396 NM_002623	-473137	+	NM_080617	1282427	-	BC069105 NM_019888 AB529241 AY227893 BC069591 BC069599 BC096702 BC096737 BC098169 BC098351 CU686926	1526203	+	NM_080821 TSC_hg19_v1_chr20_+_54934029 AK314768 AJ311123 BC017725 AK075565	1636440	+	BC008992|DOK5|55816|docking protein 5##NM_018431|DOK5|55816|docking protein 5##AF132732|DOK5|55816|docking protein 5##AK313222|DOK5|55816|docking protein 5##AK312059|PFDN4|5203|prefoldin subunit 4##BC010953|PFDN4|5203|prefoldin subunit 4##U41816|PFDN4|5203|prefoldin subunit 4##NM_002623|PFDN4|5203|prefoldin subunit 4##NM_080617|CBLN4|140689|cerebellin 4 precursor##BC069105|MC3R|4159|melanocortin 3 receptor##NM_019888|MC3R|4159|melanocortin 3 receptor##AY227893|MC3R|4159|melanocortin 3 receptor##BC069591|MC3R|4159|melanocortin 3 receptor##BC069599|MC3R|4159|melanocortin 3 receptor##BC096702|MC3R|4159|melanocortin 3 receptor##BC096737|MC3R|4159|melanocortin 3 receptor##BC098169|MC3R|4159|melanocortin 3 receptor##BC098351|MC3R|4159|melanocortin 3 receptor##NM_080821|FAM210B|116151|family with sequence similarity 210, member B##AK314768|FAM210B|116151|family with sequence similarity 210, member B##AJ311123|FAM210B|116151|family with sequence similarity 210, member B##BC017725|FAM210B|116151|family with sequence similarity 210, member B##AK075565|FAM210B|116151|family with sequence similarity 210, member B	0.091259	0.711302	CTCF.p2:-14:0.711
chr21	43835311	43835384	reg1017932.p1	4.121	+	NM_001001895 NM_001243467 NM_018961 AK313367 AK301279 BC028138 AJ277750 BC069357 BC069483 BC069577 BC069511 TSC_hg19_v1_chr21_+_43824026 AK308151 AF520809 AF521702 CU686870	-11335	+	AY358458 AF201380 AF267741 AK172842 AB038157 AB038160 NM_024022 NM_032405	-19186	-	M12075 BC032811 NM_003225 X00474 X52003	-48725	-	HQ258144 AK314746 BC101519 BC113367 AK057315 AB041016 NM_080860 AB006536	81033	-	AJ269529 NM_018964	84394	+	TSC_hg19_v1_chr21_+_43933984 BC042139 AF311320	98656	+	NM_001001895|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_001243467|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##NM_018961|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK313367|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK301279|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC028138|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AJ277750|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069357|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069483|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069577|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##BC069511|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AK308151|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF520809|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AF521702|UBASH3A|53347|ubiquitin associated and SH3 domain containing A##AY358458|TMPRSS3|64699|transmembrane protease, serine 3##AF201380|TMPRSS3|64699|transmembrane protease, serine 3##AF267741|TMPRSS3|64699|transmembrane protease, serine 3##AK172842|TMPRSS3|64699|transmembrane protease, serine 3##AB038157|TMPRSS3|64699|transmembrane protease, serine 3##AB038160|TMPRSS3|64699|transmembrane protease, serine 3##NM_024022|TMPRSS3|64699|transmembrane protease, serine 3##NM_032405|TMPRSS3|64699|transmembrane protease, serine 3##M12075|TFF1|7031|trefoil factor 1##BC032811|TFF1|7031|trefoil factor 1##NM_003225|TFF1|7031|trefoil factor 1##X00474|TFF1|7031|trefoil factor 1##X52003|TFF1|7031|trefoil factor 1##HQ258144|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK314746|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC101519|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##BC113367|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AK057315|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB041016|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##NM_080860|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AB006536|RSPH1|89765|radial spoke head 1 homolog (Chlamydomonas)##AJ269529|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##NM_018964|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##BC042139|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1##AF311320|SLC37A1|54020|solute carrier family 37 (glycerol-3-phosphate transporter), member 1	0.0	0.0	
chr8	131143866	131143993	reg1013852.p2	4.121	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-115046	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-115235	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-115270	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	312102	-	NM_001115	908905	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1772428	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	1.973995	0.0	denovo_WM_7:-55:0.267	denovo_WM_7:-56:0.314	denovo_WM_7:-71:0.240	denovo_WM_7:-72:0.392	denovo_WM_7:-73:0.217
chr1	168978450	168978598	reg1017646.p1	4.120	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	-280095	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	-432732	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-465307	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	97445	+	TSC_hg19_v1_chr1_-_169337033 AB209049 BC006983 AK290701 AF153191 AK094513 AK301917 NM_013330 NM_197972	358568	-	NM_003666 AF288161 U79751 AK223533	358699	+	DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AB209049|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##BC006983|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK290701|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AF153191|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK094513|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK301917|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_013330|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_197972|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_003666|BLZF1|8548|basic leucine zipper nuclear factor 1##AF288161|BLZF1|8548|basic leucine zipper nuclear factor 1##U79751|BLZF1|8548|basic leucine zipper nuclear factor 1##AK223533|BLZF1|8548|basic leucine zipper nuclear factor 1	0.716576	0.0	denovo_WM_7:-28:0.560
chr14	64108248	64108400	reg1013721.p2	4.120	+	BX248008 NM_001008726	-200	-	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-98235	-	TSC_hg19_v1_chr14_-_64010080 AK313500 BC013154 NM_006246	-98250	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	238	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	86425	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	211371	+	BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AK313500|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC013154|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##NM_006246|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.0	0.0	
chr16	22252906	22253032	reg1014501.p1	4.120	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	-35296	+	AK098260 AK128606 AK307544 NM_173615	-149108	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-233481	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	55779	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	132826	-	NM_001135865 BC036263 AK296338 CU690320	272013	+	NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene	1.042134	0.0	
chr18	29605931	29606028	reg1012623.p1	4.120	+	TSC_hg19_v1_chr18_+_29598794 BC012021 CU680164	-7173	+	AK000463 AK225518 NM_017831	-7535	+	TSC_hg19_v1_chr18_-_29523092 NM_014939 AL136749	-82871	-	NM_016271 TSC_hg19_v1_chr18_+_29671843	65857	+	TSC_hg19_v1_chr18_+_29671959 AK315761 AF162680 BC018107	66071	+	NM_001191324 NM_198128 TSC_hg19_v1_chr18_+_29672650 AK023579 AB528421 DQ890744 DQ893914 CU676180 BT006878 CR457150	66674	+	BC012021|RNF125|54941|ring finger protein 125##AK000463|RNF125|54941|ring finger protein 125##AK225518|RNF125|54941|ring finger protein 125##NM_017831|RNF125|54941|ring finger protein 125##NM_014939|TRAPPC8|22878|trafficking protein particle complex 8##AL136749|TRAPPC8|22878|trafficking protein particle complex 8##NM_016271|RNF138|51444|ring finger protein 138##AK315761|RNF138|51444|ring finger protein 138##AF162680|RNF138|51444|ring finger protein 138##BC018107|RNF138|51444|ring finger protein 138##NM_001191324|RNF138|51444|ring finger protein 138##NM_198128|RNF138|51444|ring finger protein 138##AK023579|RNF138|51444|ring finger protein 138##DQ890744|RNF138|51444|ring finger protein 138##DQ893914|RNF138|51444|ring finger protein 138##BT006878|RNF138|51444|ring finger protein 138##CR457150|RNF138|51444|ring finger protein 138	0.99834	0.0	denovo_WM_7:58:0.457	denovo_WM_7:59:0.457
chr19	18518996	18519114	reg1005925.p1	4.120	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	-10635	-	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	-22073	+	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	-67648	+	TSC_hg19_v1_chr19_+_18530163 NM_001009998 NM_032627	11072	+	TSC_hg19_v1_chr19_+_18530224 BC000274 AK098429	11170	+	TSC_hg19_v1_chr19_+_18530425 CU674122 AB464208	11385	+	BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##NM_001009998|SSBP4|170463|single stranded DNA binding protein 4##NM_032627|SSBP4|170463|single stranded DNA binding protein 4##BC000274|SSBP4|170463|single stranded DNA binding protein 4##AK098429|SSBP4|170463|single stranded DNA binding protein 4	0.0	0.0	
chr2	201982350	201982530	reg1013382.p2	4.120	+	AF009616 TSC_hg19_v1_chr2_+_201981056 AF010127 U97074 AK315924 BC001602 AB209600	-1399	+	TSC_hg19_v1_chr2_+_201980874 AK296036 NM_001127184 NM_001202516 NM_001202517 NM_001202519 NM_003879 AK297387 AF005774	-1545	+	TSC_hg19_v1_chr2_-_201967706 D28373	-14736	-	AF015450 NM_001127183 AK308767 TSC_hg19_v1_chr2_+_201983395	891	+	TSC_hg19_v1_chr2_+_201983419 AK289913 AK315208	1032	+	NM_001202518 AK304585 AF041462	15282	+	AF009616|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF010127|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##U97074|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315924|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##BC001602|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AB209600|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK296036|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001127184|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202516|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202517|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202519|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_003879|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK297387|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF005774|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF015450|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001127183|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK308767|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK289913|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315208|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202518|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK304585|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041462|CFLAR|8837|CASP8 and FADD-like apoptosis regulator	0.995286	0.0	
chr7	135348918	135348996	reg1011739.p2	4.120	+	TSC_hg19_v1_chr7_+_135347230 NM_001130929 BC063529 BC073942 BC021734 BC107765 BC047474 BC016741 BC040872	-1696	+	TSC_hg19_v1_chr7_+_135242675 NM_015135 BC136624 AK297307 BC146784 D86978	-106269	+	BC035590 U71267 U71268 AL389980 TSC_hg19_v1_chr7_-_135194851 AK314540 AK074493 AK300365 NM_001008225 NM_001190847 NM_001190848 NM_001190849 NM_001190850 NM_013316	-154097	-	AF169301 NM_012450 BC030689 TSC_hg19_v1_chr7_-_135412940 AB208809	63979	-	BC137311 BC137312 AK297754 AY358803 AK290250 AK310180 NM_205855	84522	-	AF130088 TSC_hg19_v1_chr7_-_135613232	264263	-	NM_001130929|C7orf73|647087|chromosome 7 open reading frame 73##BC063529|C7orf73|647087|chromosome 7 open reading frame 73##BC073942|C7orf73|647087|chromosome 7 open reading frame 73##BC021734|C7orf73|647087|chromosome 7 open reading frame 73##BC107765|C7orf73|647087|chromosome 7 open reading frame 73##BC047474|C7orf73|647087|chromosome 7 open reading frame 73##BC016741|C7orf73|647087|chromosome 7 open reading frame 73##BC040872|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##NM_015135|NUP205|23165|nucleoporin 205kDa##BC136624|NUP205|23165|nucleoporin 205kDa##AK297307|NUP205|23165|nucleoporin 205kDa##BC146784|NUP205|23165|nucleoporin 205kDa##D86978|NUP205|23165|nucleoporin 205kDa##BC035590|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##U71267|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##U71268|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AL389980|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AK314540|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AK074493|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AK300365|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001008225|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190847|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190848|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190849|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190850|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_013316|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AF169301|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##NM_012450|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##BC030689|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##AB208809|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4##BC137311|FAM180A|389558|family with sequence similarity 180, member A##BC137312|FAM180A|389558|family with sequence similarity 180, member A##AK297754|FAM180A|389558|family with sequence similarity 180, member A##AY358803|FAM180A|389558|family with sequence similarity 180, member A##AK290250|FAM180A|389558|family with sequence similarity 180, member A##AK310180|FAM180A|389558|family with sequence similarity 180, member A##NM_205855|FAM180A|389558|family with sequence similarity 180, member A##AF130088|LUZP6|767558|leucine zipper protein 6	0.0	0.0	
chr14	75675299	75675365	reg1012921.p1	4.119	+	TSC_hg19_v1_chr14_-_75643341 NM_006827	-31980	-	BC001496 BC001825 TSC_hg19_v1_chr14_-_75643334	-31999	-	TSC_hg19_v1_chr14_-_75643322 AK296800 AK312384	-32012	-	NM_005252 TSC_hg19_v1_chr14_+_75745530 AK097379 AK291326 AK298659 BX647104 BC004490 S65138 DQ893444 DQ896750 AB385594 CR541785 CR542267 CU678740	70250	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	219309	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	219681	+	NM_006827|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001496|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001825|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK296800|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK312384|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##NM_005252|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK097379|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK291326|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##AK298659|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BX647104|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##BC004490|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##S65138|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ893444|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##DQ896750|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR541785|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##CR542267|FOS|2353|FBJ murine osteosarcoma viral oncogene homolog##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2	0.0	0.0	
chr16	16681566	16681746	reg1014287.p1	4.119	+	TSC_hg19_v1_chr16_+_16326508 AB463143	-355126	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-355168	+	TSC_hg19_v1_chr16_+_16326478 AK225803	-355174	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	883149	-	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	1891735	-	TSC_hg19_v1_chr16_-_18798077 AK127316	2116440	-	BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2	0.716902	0.0	denovo_WM_7:31:0.703
chr1	72037406	72037497	reg1015846.p1	4.119	+	NM_005455 NM_203350	-490480	-	CU691764 EU446929 AB209568 TSC_hg19_v1_chr1_-_71546719 AL136945 AK222858 BC010962 AF065391 AF065392 BC033648 BC039814	-490744	-	AB451481 AY387856 AY429108 CU692894 BC118578 BC118659 U13214 U13215 U13216 U13217 U13218 AK290634 L26976 AK315825 L27490 S69326 X83857 X83858 X83859 X83860 X83861 X83862 X83863 L27488 L27489 S69200 D38297 D38298 D38299 D38300 D38301 D86097 D86098 NM_001126044 NM_198714 NM_198715 NM_198716 NM_198717 NM_198718 NM_198719 TSC_hg19_v1_chr1_-_71513500 BC024229	-524072	-	TSC_hg19_v1_chr1_-_72748182 AK295481 BX538014 AK092307 AX747470 NM_173808	710760	-	TSC_hg19_v1_chr1_-_72748491 AY358132	711054	-	AK131476 BC020778 BX647210 TSC_hg19_v1_chr1_-_74663861 NM_001105659	2626397	-	NM_005455|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##NM_203350|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##EU446929|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AB209568|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AL136945|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AK222858|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC010962|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AF065391|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AF065392|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC033648|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC039814|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AB451481|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AY387856|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AY429108|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC118578|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC118659|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13214|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13215|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13216|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13217|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13218|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK290634|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L26976|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK315825|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27490|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##S69326|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83857|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83858|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83859|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83860|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83861|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83862|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83863|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27488|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27489|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##S69200|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38297|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38298|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38299|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38300|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38301|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D86097|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D86098|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_001126044|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198714|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198715|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198716|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198717|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198718|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198719|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC024229|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK295481|NEGR1|257194|neuronal growth regulator 1##BX538014|NEGR1|257194|neuronal growth regulator 1##AK092307|NEGR1|257194|neuronal growth regulator 1##NM_173808|NEGR1|257194|neuronal growth regulator 1##AK131476|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3##BC020778|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3##BX647210|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3##NM_001105659|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3	0.996888	0.0	
chr17	42204680	42204816	reg1012165.p1	4.119	+	TSC_hg19_v1_chr17_-_42201010 NM_001015053 NM_005474	-3732	-	TSC_hg19_v1_chr17_-_42201007 AK294760 AB011172	-3766	-	NM_138387 TSC_hg19_v1_chr17_+_42148102 BC021574 BC062596 AK091417 AX746969 BC002494	-56549	+	TSC_hg19_v1_chr17_+_42219297 NM_001171251 NM_024032 AK291924	14518	+	TSC_hg19_v1_chr17_+_42219306 AL834295	14586	+	TSC_hg19_v1_chr17_+_42219388 BC000121 AK021656	14655	+	NM_001015053|HDAC5|10014|histone deacetylase 5##NM_005474|HDAC5|10014|histone deacetylase 5##AK294760|HDAC5|10014|histone deacetylase 5##AB011172|HDAC5|10014|histone deacetylase 5##NM_138387|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC021574|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC062596|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##BC002494|G6PC3|92579|glucose 6 phosphatase, catalytic, 3##NM_001171251|C17orf53|78995|chromosome 17 open reading frame 53##NM_024032|C17orf53|78995|chromosome 17 open reading frame 53##AK291924|C17orf53|78995|chromosome 17 open reading frame 53##AL834295|C17orf53|78995|chromosome 17 open reading frame 53##BC000121|C17orf53|78995|chromosome 17 open reading frame 53##AK021656|C17orf53|78995|chromosome 17 open reading frame 53	0.996161	0.0	
chr17	64438065	64438246	reg1005305.p3	4.119	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-139228	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-139405	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-212630	-	AK290171 TSC_hg19_v1_chr17_+_64831234	393080	+	BC101633 NM_145811 BC101607 AF361351 AF458898	435265	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	522734	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.983952	0.0	denovo_WM_7:34:0.840
chr18	56631083	56631263	reg1010957.p2	4.119	+	TSC_hg19_v1_chr18_+_56531281 BC036366	-99824	+	TSC_hg19_v1_chr18_+_56530714 AB046849	-100318	+	NM_018181 AF295077 BC130618 BC130620	-101054	+	TSC_hg19_v1_chr18_+_56807119 AK314107 AF212233 AK311213 NM_033280 AK295346 AK307127 BC009703 CU679449	175974	+	TSC_hg19_v1_chr18_+_56887389 AK307264 BC004488 NM_001012512 NM_001012513 NM_002091 K02054 DQ893451 DQ896223 AB528662 AB102889 BT006803	256270	+	BC051901 AF115392 NM_013435 AB593018	309481	-	BC036366|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##NM_018181|ZNF532|55205|zinc finger protein 532##AF295077|ZNF532|55205|zinc finger protein 532##BC130618|ZNF532|55205|zinc finger protein 532##BC130620|ZNF532|55205|zinc finger protein 532##AK314107|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AF212233|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##NM_033280|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK295346|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307127|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC009703|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307264|GRP|2922|gastrin-releasing peptide##BC004488|GRP|2922|gastrin-releasing peptide##NM_001012512|GRP|2922|gastrin-releasing peptide##NM_001012513|GRP|2922|gastrin-releasing peptide##NM_002091|GRP|2922|gastrin-releasing peptide##K02054|GRP|2922|gastrin-releasing peptide##DQ893451|GRP|2922|gastrin-releasing peptide##DQ896223|GRP|2922|gastrin-releasing peptide##AB102889|GRP|2922|gastrin-releasing peptide##BT006803|GRP|2922|gastrin-releasing peptide##BC051901|RAX|30062|retina and anterior neural fold homeobox##AF115392|RAX|30062|retina and anterior neural fold homeobox##NM_013435|RAX|30062|retina and anterior neural fold homeobox##AB593018|RAX|30062|retina and anterior neural fold homeobox	0.284696	0.0	
chr19	14493292	14493420	reg1013517.p1	4.119	+	TSC_hg19_v1_chr19_+_14492255 AX775807 AX775809 AK225655 AK097264 AK225677 AK300343 AK304553 AK314697 X84700 BC026690 AX775813 U76764	-1101	+	TSC_hg19_v1_chr19_+_14491970 NM_001025160 NM_001784 NM_078481 AK292159 AK308368	-1307	+	AF307079 AB020628 NM_001008701 NM_014921 TSC_hg19_v1_chr19_-_14317074	-176308	-	TSC_hg19_v1_chr19_-_14529877 AK301847	36533	-	TSC_hg19_v1_chr19_-_14530152 BC001009 BC032128 BC010455 AK293911	36784	-	TSC_hg19_v1_chr19_-_14530193 U90426 NM_005804	36818	-	AX775807|CD97|976|CD97 molecule##AX775809|CD97|976|CD97 molecule##AK225655|CD97|976|CD97 molecule##AK097264|CD97|976|CD97 molecule##AK225677|CD97|976|CD97 molecule##AK300343|CD97|976|CD97 molecule##AK304553|CD97|976|CD97 molecule##AK314697|CD97|976|CD97 molecule##X84700|CD97|976|CD97 molecule##BC026690|CD97|976|CD97 molecule##AX775813|CD97|976|CD97 molecule##U76764|CD97|976|CD97 molecule##NM_001025160|CD97|976|CD97 molecule##NM_001784|CD97|976|CD97 molecule##NM_078481|CD97|976|CD97 molecule##AK292159|CD97|976|CD97 molecule##AK308368|CD97|976|CD97 molecule##AF307079|LPHN1|22859|latrophilin 1##AB020628|LPHN1|22859|latrophilin 1##NM_001008701|LPHN1|22859|latrophilin 1##NM_014921|LPHN1|22859|latrophilin 1##AK301847|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC001009|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC032128|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##BC010455|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##AK293911|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##U90426|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A##NM_005804|DDX39A|10212|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A	0.0	0.0	
chr19	2289831	2289965	reg1010814.p1	4.119	+	AK127680 BC107678 NM_198532	-7721	-	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	-20356	+	TSC_hg19_v1_chr19_+_2269526 BC042364	-20372	+	TSC_hg19_v1_chr19_+_2289998 AK091795 AX747191	99	+	NM_001101391	18257	-	BC018621 AF182293 TSC_hg19_v1_chr19_-_2328581 AK092837 AX747757 NM_016199	38691	-	AK127680|C19orf35|374872|chromosome 19 open reading frame 35##BC107678|C19orf35|374872|chromosome 19 open reading frame 35##NM_198532|C19orf35|374872|chromosome 19 open reading frame 35##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_001101391|LINGO3|645191|leucine rich repeat and Ig domain containing 3##BC018621|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182293|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_016199|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.0	0.0	
chr19	36698945	36699044	reg1004313.p1	4.119	+	BC002757 NM_001864	-55224	-	TSC_hg19_v1_chr19_+_36631899 CU680106 BT009775	-66809	+	TSC_hg19_v1_chr19_+_36631021 BC000592 BC011903 BC064998 BC017308 AY007141 BC023643 BC021933	-67961	+	BC068453 NM_152477 AK308212	6567	-	NM_001099638 NM_001099639 NM_007145 TSC_hg19_v1_chr19_+_36705624	6580	+	AK094310 NM_001042474	6989	-	BC002757|COX7A1|1346|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)##NM_001864|COX7A1|1346|cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)##BT009775|CAPNS1|826|calpain, small subunit 1##BC000592|CAPNS1|826|calpain, small subunit 1##BC011903|CAPNS1|826|calpain, small subunit 1##BC064998|CAPNS1|826|calpain, small subunit 1##BC017308|CAPNS1|826|calpain, small subunit 1##AY007141|CAPNS1|826|calpain, small subunit 1##BC023643|CAPNS1|826|calpain, small subunit 1##BC021933|CAPNS1|826|calpain, small subunit 1##BC068453|ZNF565|147929|zinc finger protein 565##NM_152477|ZNF565|147929|zinc finger protein 565##AK308212|ZNF565|147929|zinc finger protein 565##NM_001099638|ZNF146|7705|zinc finger protein 146##NM_001099639|ZNF146|7705|zinc finger protein 146##NM_007145|ZNF146|7705|zinc finger protein 146##AK094310|ZNF565|147929|zinc finger protein 565##NM_001042474|ZNF565|147929|zinc finger protein 565	0.0	0.0	
chr20	6913497	6913677	reg1012769.p1	4.119	+	BC069214 NM_001200	-164843	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-809424	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-809710	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1007515	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1086713	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1086820	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.729454	0.0	denovo_WM_7:-10:0.729
chr3	20065455	20065595	reg1018609.p1	4.119	+	BC105097 BC105099 BC021717 AK058178 NM_001252657	-11834	-	TSC_hg19_v1_chr3_+_19988870 AK312618 BC018288 AK309287 AK295992 BC001267	-76624	+	TSC_hg19_v1_chr3_+_19988586 NM_004162	-76836	+	NM_003884 U57317	15998	+	BC070075 TSC_hg19_v1_chr3_+_20081907 BC060823 AB527402	16385	+	AB193056 AB193057 AB193058 AB193059 AB193060 AB193061 AB193062 AB193063 AB193064 AB193065 AB193066 TSC_hg19_v1_chr3_-_20227699 AB187577 AB187578 AB187579 AB187580 AB187581 AB187582 AB567656 AB567657 BC017867 BX648516 NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_138484 AK308095 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257	162149	-	BC105097|PP2D1|151649|protein phosphatase 2C-like domain containing 1##BC105099|PP2D1|151649|protein phosphatase 2C-like domain containing 1##BC021717|PP2D1|151649|protein phosphatase 2C-like domain containing 1##AK058178|PP2D1|151649|protein phosphatase 2C-like domain containing 1##NM_001252657|PP2D1|151649|protein phosphatase 2C-like domain containing 1##AK312618|RAB5A|5868|RAB5A, member RAS oncogene family##BC018288|RAB5A|5868|RAB5A, member RAS oncogene family##AK309287|RAB5A|5868|RAB5A, member RAS oncogene family##AK295992|RAB5A|5868|RAB5A, member RAS oncogene family##BC001267|RAB5A|5868|RAB5A, member RAS oncogene family##NM_004162|RAB5A|5868|RAB5A, member RAS oncogene family##NM_003884|KAT2B|8850|K(lysine) acetyltransferase 2B##U57317|KAT2B|8850|K(lysine) acetyltransferase 2B##BC070075|KAT2B|8850|K(lysine) acetyltransferase 2B##BC060823|KAT2B|8850|K(lysine) acetyltransferase 2B##AB193056|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193057|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193058|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193059|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193060|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193061|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193062|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193063|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193064|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193065|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193066|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187577|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187578|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187579|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187580|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187581|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187582|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567656|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567657|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC017867|SGOL1|151648|shugoshin-like 1 (S. pombe)##BX648516|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012409|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012410|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012411|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012412|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012413|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_138484|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK308095|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199251|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199252|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199253|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199254|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199255|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199256|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199257|SGOL1|151648|shugoshin-like 1 (S. pombe)	0.999578	0.0	denovo_WM_7:29:0.425	denovo_WM_7:30:0.425
chr4	178363985	178364100	reg1015831.p1	4.119	+	TSC_hg19_v1_chr4_-_178363633 NM_000027 NM_001171988	-399	-	AK303370 TSC_hg19_v1_chr4_-_178363567 BC012392 AK312982	-449	-	AB528385 CR541715 DQ891353 DQ894534 M64073 TSC_hg19_v1_chr4_-_178363547 X55762	-501	-	TSC_hg19_v1_chr4_+_183065111 AK308489	4701083	+	NM_001080477 HE578284 HE578285	4881112	+	TSC_hg19_v1_chr4_-_183838533 BC001286 BC088357 AK293135 AK313221 AK310788	5474488	-	NM_000027|AGA|175|aspartylglucosaminidase##NM_001171988|AGA|175|aspartylglucosaminidase##AK303370|AGA|175|aspartylglucosaminidase##BC012392|AGA|175|aspartylglucosaminidase##AK312982|AGA|175|aspartylglucosaminidase##CR541715|AGA|175|aspartylglucosaminidase##DQ891353|AGA|175|aspartylglucosaminidase##DQ894534|AGA|175|aspartylglucosaminidase##M64073|AGA|175|aspartylglucosaminidase##X55762|AGA|175|aspartylglucosaminidase##AK308489|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##NM_001080477|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##BC001286|DCTD|1635|dCMP deaminase##BC088357|DCTD|1635|dCMP deaminase##AK293135|DCTD|1635|dCMP deaminase##AK313221|DCTD|1635|dCMP deaminase##AK310788|DCTD|1635|dCMP deaminase	0.045581	0.0	
chr7	72939870	72940050	reg1008599.p2	4.119	+	TSC_hg19_v1_chr7_-_72936624 AB032253 AF072810 NM_032408	-3345	-	TSC_hg19_v1_chr7_-_72936538 AF084479	-3411	-	BC136520 BC065029 TSC_hg19_v1_chr7_-_72936492	-3477	-	TSC_hg19_v1_chr7_-_72971945 CU679393 DQ890556 DQ893716 BC001967 AJ223979 X89985 AK290091 BC009548	31973	-	TSC_hg19_v1_chr7_-_72972023 BC000956 NM_001197244 NM_001707	32082	-	TSC_hg19_v1_chr7_-_72992678 AK302265	52759	-	AB032253|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF072810|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##NM_032408|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##AF084479|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC136520|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##BC065029|BAZ1B|9031|bromodomain adjacent to zinc finger domain, 1B##DQ890556|BCL7B|9275|B-cell CLL/lymphoma 7B##DQ893716|BCL7B|9275|B-cell CLL/lymphoma 7B##BC001967|BCL7B|9275|B-cell CLL/lymphoma 7B##AJ223979|BCL7B|9275|B-cell CLL/lymphoma 7B##X89985|BCL7B|9275|B-cell CLL/lymphoma 7B##AK290091|BCL7B|9275|B-cell CLL/lymphoma 7B##BC009548|BCL7B|9275|B-cell CLL/lymphoma 7B##BC000956|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001197244|BCL7B|9275|B-cell CLL/lymphoma 7B##NM_001707|BCL7B|9275|B-cell CLL/lymphoma 7B##AK302265|TBL2|26608|transducin (beta)-like 2	0.0	0.0	
chr13	47221251	47221366	reg1015789.p1	4.118	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-93801	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-93888	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-93985	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	150007	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	249759	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1354143	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.997628	0.0	denovo_WM_7:-50:0.310	denovo_WM_7:-51:0.310	denovo_WM_7:-52:0.310
chr13	95911599	95911719	reg1017320.p1	4.118	+	X65666 X71136 AB464716 NM_007084	-547341	-	TSC_hg19_v1_chr13_+_95254110 NM_180989 BC033906 BC052243 AK126794	-657557	+	AJ006068 TSC_hg19_v1_chr13_-_95248497 AK303439 BC005284 NM_014305	-663163	-	AF541977 AY207008 AY081219 AY133678 AY133679 AY133680 TSC_hg19_v1_chr13_-_95953688 AK298953 BC041560 AF071202 AK296247 NM_001105515 NM_005845 AK290317	42053	-	NM_001160100 NM_182848 AK055855	174195	+	TSC_hg19_v1_chr13_+_96204946 NM_006984 BC010920 U89916 AK315737 DQ892831 DQ896077 CR456845	293315	+	X65666|SOX21|11166|SRY (sex determining region Y)-box 21##X71136|SOX21|11166|SRY (sex determining region Y)-box 21##NM_007084|SOX21|11166|SRY (sex determining region Y)-box 21##NM_180989|GPR180|160897|G protein-coupled receptor 180##BC033906|GPR180|160897|G protein-coupled receptor 180##BC052243|GPR180|160897|G protein-coupled receptor 180##AK126794|GPR180|160897|G protein-coupled receptor 180##AJ006068|TGDS|23483|TDP-glucose 4,6-dehydratase##AK303439|TGDS|23483|TDP-glucose 4,6-dehydratase##BC005284|TGDS|23483|TDP-glucose 4,6-dehydratase##NM_014305|TGDS|23483|TDP-glucose 4,6-dehydratase##AF541977|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY207008|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY081219|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133678|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133679|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AY133680|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK298953|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##BC041560|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AF071202|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK296247|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001105515|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_005845|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##AK290317|ABCC4|10257|ATP-binding cassette, sub-family C (CFTR/MRP), member 4##NM_001160100|CLDN10|9071|claudin 10##NM_182848|CLDN10|9071|claudin 10##AK055855|CLDN10|9071|claudin 10##NM_006984|CLDN10|9071|claudin 10##BC010920|CLDN10|9071|claudin 10##U89916|CLDN10|9071|claudin 10##AK315737|CLDN10|9071|claudin 10##DQ892831|CLDN10|9071|claudin 10##DQ896077|CLDN10|9071|claudin 10##CR456845|CLDN10|9071|claudin 10	1.754584	0.0	denovo_WM_7:0:0.757	denovo_WM_7:-16:0.951
chr14	106765186	106765366	reg1012129.p1	4.118	+	AY393053 S85238 TSC_hg19_v1_chr14_-_106746153	-19171	-	AM279487 AF308557 Y17783 Y17784 HM774660 JN111012 AF103142 AY515002 HQ704054 JN110499 JN110977 JN111085 HM774129 HM774274 HM774585 HM774849 HQ704055 U21254 Y17140 AY050689 AY050700 AY392847 AY392855 AY393130 AY393134 AY393349 AY393375 AY393380 AY393622 AY393638 AY393642 AY393655 AY393684 AY393690 AY866668 DQ100948 AY393127 AF533986 AY866766 DQ926392 GU570247 AY866814 DQ100974 DQ926235 DQ926301 FJ039787 JN158459 AY944709 DQ535390 BC090939 AF062249 AF062286 AJ224083 GU179345 BC089421 BC066642 TSC_hg19_v1_chr14_-_106733637	-31760	-	L14821 U19885 U42468 X56526 DQ001068 L28052 AF283793 AF283795 AF283796 AF283798 AF283799 AF283805 AJ519221 AJ519266 AJ519267 AJ519271 AJ519324 AJ519325 AJ519330 AJ519337 L26907 L33035 L08083 AF431049 X67909 L08090 AF062136 AF062184 AF062205 AF062260 AF062270 AF062276 AF062280 AF174012 AF174019 AF174024 AF174029 AJ131062 AY172959 L01276 L11699 L23931 L38433 M26994 M26995 M62731 M99595 S72729 U43754 X17677 X65895 X65900 X81726 X81731 X81732 X81748 X81755 Z11946 Z47213 Z47214 Z47217 Z47226 Z47232 CU677431 L08088 Z14202 M18513 X14584 AK128301 Z14205 Z14201 Z14200 BC069020 M34024 BC015760 M29470 BC078671 TSC_hg19_v1_chr14_-_106725734 AK130476 AK092803 AK097010 AK097950 AK098817 AK128533 AK129776 AK301393 AX747738 BX640947 M97920	-39598	-	AJ305231 DQ118259 HM774835 DQ926094 AY866678 EU794438 Z80845 BC087841 TSC_hg19_v1_chr14_-_106774560	9159	-	U32154 AF460767 DQ524080 DQ454738 Y08403 HM774396 AF103161 AJ245070 AY866645 AM233757 AY670731 DQ005273 AB063909 AB363132 AJ556745 AY670715 AY670719 AY670726 AY670727 AY670745 AY670770 AY670773 AY670784 AY670819 AY670831 AY670837 AY670857 AY671081 AY671102 AY671324 AY671379 AY671400 AY671500 AY671586 AY671639 AY671641 AY671703 AY671775 AY671785 AY781815 AY781827 AY866636 DQ065711 DQ926028 DQ926188 DQ926206 FJ492934 AJ430733 EF178114 FJ385294 HM152518 AY392953 L28053 AY671012 AY671034 AY671045 AY671152 AY671174 AY671714 AY671721 L03677 Z75396 Z75404 L23570 BC073765 AK130813 AK301332 AK130585 AK128579 AK128568 AK129620 TSC_hg19_v1_chr14_-_106781004	15494	-	U64504 Z14180 DQ454781 M18509 AF460668 AF460673 AF460675 AF460688 AF460707 AF460760 AF460782 AF460788 DQ454502 DQ100920 EF566906 DQ454582 DQ523854 DQ100716 DQ454403 DQ454402 DQ454906 DQ523890 AY003793 BX640623 DQ454507 DQ454695 DQ454742 DQ523911 EU099159 GQ232763 GQ232780 GQ232864 GQ232888 GU552761 GU552780 DQ454405 DQ454406 DQ454589 AY003801 AY003839 DQ454419 DQ454490 DQ454706 DQ454907 GQ232854 GQ232856 GQ232911 GQ232924 GU552697 AY003712 AY003723 DQ454398 DQ454639 DQ454719 DQ454820 DQ454904 DQ454921 DQ454987 DQ523878 DQ523898 GU552703 AY003789 DQ454393 DQ454414 DQ454460 DQ454473 DQ454496 DQ454497 DQ454503 DQ454590 DQ454624 DQ454678 DQ454694 DQ454845 DQ454864 DQ454869 DQ454974 DQ523914 DQ523916 GU552705 GU552738 GU552768 GU552776 AY003776 AY003811 AY998717 AY003831 DQ454394 DQ454395 DQ454400 DQ454407 DQ454412 DQ454474 DQ454499 DQ454506 DQ454604 DQ454666 DQ454734 DQ454823 DQ454835 DQ454934 DQ454976 DQ455003 DQ455006 DQ523851 DQ523859 DQ523899 AY003735 DQ454597 DQ454844 FJ874077 EF175416 AF004938 DQ454716 DQ523876 FJ840036 FJ840067 FJ840079 FJ840129 FJ840148 FJ840231 FJ840268 FJ873887 FJ873897 FJ873904 FJ873915 FJ873930 FJ873932 FJ873948 FJ873956 FJ873969 FJ873988 FJ873989 FJ874009 FJ874019 FJ874024 FJ874052 FJ874057 FJ874073 AJ008230 AY003803 DQ454836 EF407824 AF103200 AJ487485 EU433876 EU814968 FJ694879 AF103305 FJ694880 DQ524171 EF091915 EF091916 EF175387 EF175401 EF175415 EU350419 EU667605 EU814961 JF810266 JF810269 EF407832 AF103085 AY003859 AY003864 DQ100848 EU090243 EU099132 EU099242 EU099251 EU099260 EU099118 EU099097 EU099122 HQ392876 DQ524166 DQ524169 EU099073 EU099134 EU099139 EU099217 EU099229 EU099240 EU099265 EU099284 AF343360 EU099291 EU099226 AJ002393 AF103298 AF103364 AF103074 AF103080 HM214899 AF103059 TSC_hg19_v1_chr14_-_106791270 AF103084 AF103157 AF103220 AF103317 AF103318 AF103365 U00579 AF103357 HM774788 AF103068 AY062326 AY180387 JN110656 JN110735 JN110757 JN110843 JN110854 L03815 L03823 L03826 L03827 L03828 L03829 L04339 L04346 S49240 FJ385359 FJ385425 GQ504925 HM774036 HM774067 HM774092 HM774095 HM774162 HM774174 HM774347 HM774351 HM774398 HM774443 HM774457 HM774465 HM774539 HM774563 HM774565 HM774593 HM774616 HM774641 HM774647 HM774679 HM774792 HM774794 HM774813 HM774842 HM774881 HM774913 HM774944 HM774955 HM775040 HQ703997 HQ704043 HQ704044 FJ385327 HM774124 AF103044 AF103063 AF103097 AF103138 AF103296 AF103368 HM774710 AF082197 AF103267 EF624221 EU146340 EU146376 DQ100926 AB608263 AF029330 AF485477 AJ233695 AJ233700 AJ233703 AJ233708 AJ300790 AJ300797 AM259131 AM259137 AY960863 DQ100942 L03139 U50344 AF485445 AY062325 AY960870 AF092502 AF485421 AJ132851 AJ300795 AY847516 FJ492935 HM995018 L03163 L38560 HM996250 HM996014 AY423179 AY423181 AY423182 AY423200 X75021 AF035795 AJ245225 AJ245227 AJ245263 AJ245272 DQ431474 DQ431477 DQ431481 DQ431496 DQ431498 DQ431500 DQ431502 DQ431503 DQ431504 DQ431581 DQ431599 DQ431629 DQ431635 DQ431649 DQ431652 HM995402 HM995022 HM996475 DQ109964 DQ109966 AF035021 AF062287 AF062288 AF062302 AJ308462 AJ389191 AY640480 AY941849 AY941855 AY941909 AY941928 AY941961 AY941971 AY941981 AY941984 DQ100679 DQ100699 DQ100757 DQ100938 DQ187599 DQ187600 DQ187608 DQ187648 DQ187710 DQ431659 DQ454487 DQ454488 DQ490738 DQ490740 DQ523943 DQ524050 DQ524136 DQ524162 HM994893 HM994896 HM994917 HM994919 HM994947 HM994954 HM994984 HM994985 HM994986 HM995021 HM995023 HM995024 HM995029 HM995030 HM995032 HM995051 HM995074 HM995075 HM995077 HM995078 HM995079 HM995080 HM995116 HM995119 HM995166 HM995250 HM995337 HM995342 HM995343 HM995344 HM995362 HM995364 HM995394 HM995399 HM995400 HM995404 HM995410 HM995426 HM995432 HM995464 HM995465 HM995469 HM995493 HM995494 HM995497 HM995537 HM995540 HM995567 HM995572 HM995574 HM995576 HM995702 HM995745 HM995951 HM995965 HM995979 HM996084 HM996100 HM996110 HM996139 HM996205 HM996210 HM996212 HM996221 HM996240 HM996242 HM996249 HM996252 HM996260 HM996262 HM996271 HM996418 HM996551 AJ245221 AY640576 DQ187667 DQ187669 DQ187670 DQ187671 DQ187674 DQ187676 DQ187705 DQ187732 DQ187733 DQ322735 DQ322736 DQ322737 DQ322749 DQ322750 DQ322753 DQ322754 DQ322765 DQ322766 DQ322767 DQ322778 DQ322779 DQ322780 DQ322781 DQ322782 DQ322796 DQ322798 DQ322824 DQ322826 DQ322827 DQ322870 DQ322871 DQ322872 DQ322873 DQ322875 DQ322876 DQ322882 DQ322883 DQ322884 DQ322891 DQ322893 DQ322942 DQ322943 DQ322944 DQ322945 DQ322946 DQ322947 DQ322951 DQ322954 DQ322981 DQ323006 DQ323028 DQ840661 DQ840662 DQ840664 DQ840665 DQ840666 DQ840667 DQ840669 DQ840670 DQ840672 DQ840673 DQ840684 DQ840685 DQ840686 DQ840688 DQ840689 DQ840694 DQ840695 DQ840697 DQ840699 DQ840700 DQ840701 DQ840717 DQ840719 DQ840726 DQ840728 DQ840730 DQ840732 DQ840735 DQ840740 DQ840741 DQ840742 DQ840772 DQ840776 DQ840777 DQ840778 DQ840780 DQ840804 DQ840807 DQ840810 DQ840818 DQ840819 DQ840821 DQ840826 DQ840829 DQ840831 DQ840833 DQ840838 DQ840843 DQ840865 DQ840866 DQ840868 DQ840870 DQ840871 DQ840873 DQ840874 DQ840878 DQ840879 DQ840882 DQ840883 DQ840886 DQ840889 DQ840891 DQ840892 DQ840893 DQ840899 DQ840900 DQ840906 DQ840907 DQ840909 DQ840911 DQ840912 DQ840913 DQ840914 DQ840915 DQ840916 DQ840919 DQ840920 AB012909 AB063658 AB063660 AB063698 AB063713 AB063792 AB063798 AB063805 AB063808 AB063830 AB063833 AB063839 AB063842 AB063888 AB063889 AB063893 AB063894 AB063913 AB063915 AB066889 AB066895 AB066988 AB067003 AB067023 AB067071 AB067097 AB067108 AB067236 AB067238 AB067239 AB095272 AB355876 AB363091 AB363100 AB363105 AB363110 AB363112 AB363118 AB363123 AB363124 AB363144 AB363147 AB363157 AB373609 AB373615 AB373618 AB373631 AB373635 AB374184 AB374186 AF035024 AF035030 AF044419 AF044420 AF044422 AF044425 AF044427 AF044442 AF090355 AF099201 AF174074 AF471431 AJ132850 AJ271549 AJ300787 AJ300793 AJ300798 AJ300803 AJ308463 AJ633622 AJ633623 AY028777 AY033265 AY033266 AY033267 AY530317 AY554176 AY640472 AY640475 AY640477 AY640483 AY640501 AY640511 AY640535 AY640539 AY640541 AY640544 AY640549 AY640550 AY640557 AY640558 AY640561 AY640568 AY640569 AY640573 AY640577 AY685306 AY781859 AY846266 AY846267 AY866744 AY941844 AY941856 AY941857 AY941860 AY941863 AY941865 AY941866 AY941868 AY941892 AY941896 AY941898 AY941901 AY941907 AY941913 AY941935 AY941942 AY941950 AY941953 AY941968 AY941970 AY941982 AY941983 AY941985 AY941986 AY941988 AY941989 AY944708 AY944716 AY971015 AY971027 AY971037 AY971078 AY971081 AY971115 AY971120 AY971130 AY971135 DQ065629 DQ065669 DQ065674 DQ065689 DQ065692 DQ065718 DQ065725 DQ431499 DQ431621 DQ431627 DQ840705 DQ840715 DQ840744 DQ926087 DQ926091 DQ926150 DQ926207 DQ926222 DQ926372 DQ926388 DQ926512 DQ926569 DQ926578 DQ926634 EF177978 EF178004 EF178010 EF178073 EF178090 EF178124 EU169674 EU549731 EU794421 FJ195515 FJ385278 FJ385287 FJ385289 FJ385366 FJ481088 FJ492912 GU570325 GU570328 HM047071 Z46771 Z80839 AB021507 AB021508 AB021511 AB021512 AB021513 AB021516 AB021524 AB021531 AB021532 AB021535 AB027433 AB027441 AB030639 AB063789 AB063790 AB063793 AB063802 AB063813 AB063815 AB063900 AB063901 AB084083 AF021942 AF021960 AF021971 AF062116 AF107235 AF115111 AF115121 AF115125 AF115126 AF115127 AF123353 AF123362 AF174093 AF174116 AF174121 AF212993 AF471391 AF471392 AF471394 AF471403 AF471420 AF471424 AF471425 AF471427 AF471428 AF471432 AF471433 AF471435 AF471436 AF471437 AF471438 AF471441 AF471445 AF471446 AF471448 AF471450 AF471457 AJ233701 AJ233705 AJ233707 AJ239331 AJ239332 AJ239336 AJ239349 AJ239361 AJ245258 AJ245265 AJ245268 AJ245270 AJ245273 AJ245274 AJ245275 AJ245276 AJ245280 AJ245282 AJ245286 AJ245287 AJ245288 AJ245289 AJ245290 AJ245291 AJ245292 AJ245293 AJ245301 AJ245302 AJ245303 AJ245304 AJ245306 AJ245307 AJ245308 AJ245309 AJ245315 AJ245316 AJ245342 AJ245347 AJ245350 AJ245351 AJ245357 AJ245358 AJ249376 AJ389171 AJ413996 AJ413997 AJ414012 AJ491904 AJ491905 AJ508768 AJ555253 AJ556715 AJ579099 AJ579110 AJ579114 AJ579139 AJ579144 AJ579145 AJ579146 AJ579147 AJ579148 AJ579151 AJ579152 AJ579154 AJ579158 AJ579193 AJ579194 AJ579199 AJ579220 AJ579230 AJ579276 AJ579279 AJ579284 AJ617572 AJ617575 AJ627229 AJ627230 AJ627232 AJ627235 AJ627239 AJ627243 AJ627244 AJ627245 AM279604 AY033241 AY345918 AY345922 AY543586 AY640536 AY781813 AY781816 AY781879 AY781880 AY781883 AY866854 AY882579 AY927661 AY941847 AY941848 AY941861 AY941864 AY941867 AY941869 AY941871 AY941872 AY941874 AY941875 AY941893 AY941894 AY941895 AY941897 AY941904 AY941908 AY941922 AY941932 AY941933 AY941934 AY941944 AY941946 AY941951 AY941954 AY941956 AY941963 AY941964 AY941966 AY941967 AY941969 AY944690 AY971127 D83678 D83681 D83684 D83685 D83694 DQ005284 DQ065696 DQ100659 DQ100685 DQ100775 DQ100819 DQ100846 DQ100857 DQ100907 DQ100930 DQ212508 DQ212509 DQ431475 DQ431476 DQ431501 DQ431573 DQ431575 DQ431576 DQ431580 DQ431582 DQ431606 DQ431607 DQ431622 DQ431628 DQ431633 DQ431634 DQ431637 DQ431642 DQ431643 DQ431646 DQ431653 DQ431658 DQ535263 DQ535266 DQ535268 DQ535293 DQ535308 DQ535373 DQ535382 DQ535397 DQ535424 DQ535426 DQ535429 DQ535437 DQ535439 DQ535440 DQ535461 DQ535466 DQ840703 DQ840706 DQ840712 DQ840713 DQ840745 DQ840782 DQ840813 DQ923052 DQ926032 DQ926064 DQ926133 DQ926340 DQ926374 DQ926384 DQ926552 EF177969 EF177975 EF177991 EF178015 EF178075 EF178091 EF178098 EF178099 EF221755 EF633749 EF633750 EF633753 EF633754 EF633779 EF633780 EU794440 EU835548 FJ195507 FJ195508 FJ195513 FJ195514 FJ208792 FJ385280 FJ385302 FJ385307 FJ385312 FJ385365 HQ378334 HQ393907 JN234430 JN234435 M85255 S64471 S73507 S80860 U70238 U96391 U96392 X61646 X62961 X62966 X62970 X64238 X72744 X72745 X79169 X79171 X87444 X87459 X87891 X99357 X99358 X99359 Y12720 Y13056 Y15772 Y17139 Z14172 Z18826 Z98730 Z98731 Z98732 Z98733 Z98734 Z98735 Z98736 L03636 AB021514 S73961 HM995878 HM995746 HM995875 HM995879 HQ420175 X69865 M28074 AY392931 AY393061 Z14168 Z14192 L23566 L23568 Z14174 DQ322776 AB159728 AF027159 AF062099 AF062277 AF062281 AY190820 AY190824 AY894992 L03681 L26399 L38427 L38429 M62726 M62728 M62729 M62737 U43757 U43763 X65901 X80305 X81696 X81738 X81745 Z14177 Z80846 CU676522 M81848 Z14204 Z14203 M81847 M34030 M18508 M34026 M34031 M31607 AJ010443 BC019046 CR749861 M18517 BC020240 AK098153 AK093721 AX748278 AK057614 AK097350 AK125633 AK128477 AK128614 AK128658 AK130577 BX538118	26018	-	BC090939|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC089421|IGHG3|3502|immunoglobulin heavy constant gamma 3 (G3m marker)##BC066642|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AY172959|IGHV4-31|28396|immunoglobulin heavy variable 4-31##X14584|IGHV3-23|28442|immunoglobulin heavy variable 3-23##AK128301|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC069020|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BC015760|IGHM|3507|immunoglobulin heavy constant mu##BC078671|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK130476|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK092803|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK097010|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK097950|IGHM|3507|immunoglobulin heavy constant mu##AK098817|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK129776|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##BX640947|IGHV4-31|28396|immunoglobulin heavy variable 4-31##BC087841|IGHA1|3493|immunoglobulin heavy constant alpha 1##BC073765|IGHA2|3494|immunoglobulin heavy constant alpha 2 (A2m marker)##AK130813|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK130585|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK128568|IGHD|3495|immunoglobulin heavy constant delta##AK129620|IGHA1|3493|immunoglobulin heavy constant alpha 1##BX640623|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##AF035024|IGHV3-30|28439|immunoglobulin heavy variable 3-30##Y13056|SCFV|652070|single-chain Fv fragment##AY894992|IGHV4-31|28396|immunoglobulin heavy variable 4-31##BC019046|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##CR749861|IGHG2|3501|immunoglobulin heavy constant gamma 2 (G2m marker)##BC020240|IGHM|3507|immunoglobulin heavy constant mu##AK098153|IGHG3|3502|immunoglobulin heavy constant gamma 3 (G3m marker)##AK093721|IGHA1|3493|immunoglobulin heavy constant alpha 1##AK125633|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)##AK128614|IGHD|3495|immunoglobulin heavy constant delta##AK128658|IGHD|3495|immunoglobulin heavy constant delta##AK130577|IGHM|3507|immunoglobulin heavy constant mu##BX538118|IGHG1|3500|immunoglobulin heavy constant gamma 1 (G1m marker)	0.0	4.468854	CTCF.p2:2:0.598	CTCF.p2:-37:0.960	CTCF.p2:80:0.866	CTCF.p2:-94:0.929	CTCF.p2:100:0.989
chr16	18340070	18340182	reg1009158.p1	4.118	+	AJ539163 NM_022166 TSC_hg19_v1_chr16_-_17564780	-775321	-	TSC_hg19_v1_chr16_+_16326508 AB463143	-2013596	+	TSC_hg19_v1_chr16_+_16326489 BC028389	-2013638	+	TSC_hg19_v1_chr16_-_18573420 AB463143 BC028389 AK225803 BC041131 AL832855 NM_001004060 NM_173614	233265	-	TSC_hg19_v1_chr16_-_18798077 AK127316	457970	-	BC001697 TSC_hg19_v1_chr16_-_18801657 BC030569 BC032115 AK023088 AK130967 AK291988 AK311976 D28347 NM_001019 NM_001030009 BC105273 BC105292	461529	-	AJ539163|XYLT1|64131|xylosyltransferase I##NM_022166|XYLT1|64131|xylosyltransferase I##BC028389|NOMO2|283820|NODAL modulator 2##BC028389|NOMO2|283820|NODAL modulator 2##AK225803|NOMO2|283820|NODAL modulator 2##BC041131|NOMO2|283820|NODAL modulator 2##AL832855|NOMO2|283820|NODAL modulator 2##NM_001004060|NOMO2|283820|NODAL modulator 2##NM_173614|NOMO2|283820|NODAL modulator 2##BC001697|RPS15A|6210|ribosomal protein S15a##BC030569|RPS15A|6210|ribosomal protein S15a##BC032115|RPS15A|6210|ribosomal protein S15a##AK023088|RPS15A|6210|ribosomal protein S15a##AK130967|RPS15A|6210|ribosomal protein S15a##AK291988|RPS15A|6210|ribosomal protein S15a##AK311976|RPS15A|6210|ribosomal protein S15a##NM_001019|RPS15A|6210|ribosomal protein S15a##NM_001030009|RPS15A|6210|ribosomal protein S15a##BC105273|RPS15A|6210|ribosomal protein S15a##BC105292|RPS15A|6210|ribosomal protein S15a	0.993876	0.0	denovo_WM_7:-5:0.248	denovo_WM_7:-6:0.248	denovo_WM_7:-7:0.248	denovo_WM_7:-8:0.248
chr4	777887	777969	reg1012300.p2	4.118	+	TSC_hg19_v1_chr4_-_775606 BC040652 AK055583	-2306	-	TSC_hg19_v1_chr4_+_699570 AK225892 NM_006315 AK057124 AK300290 AK125801	-78298	+	TSC_hg19_v1_chr4_-_683107 AK292010	-94812	-	AK126578 TSC_hg19_v1_chr4_-_819894 AK311921 AB593095 BC002471 NM_006651	41997	-	TSC_hg19_v1_chr4_-_925898 BT007015 D88435	147993	-	BC063606 TSC_hg19_v1_chr4_-_926081 BC008668	148157	-	BC040652|LOC100129917|100129917|uncharacterized LOC100129917##AK055583|LOC100129917|100129917|uncharacterized LOC100129917##AK225892|PCGF3|10336|polycomb group ring finger 3##NM_006315|PCGF3|10336|polycomb group ring finger 3##AK057124|PCGF3|10336|polycomb group ring finger 3##AK300290|PCGF3|10336|polycomb group ring finger 3##AK125801|PCGF3|10336|polycomb group ring finger 3##AK292010|MFSD7|84179|major facilitator superfamily domain containing 7##AK126578|CPLX1|10815|complexin 1##AK311921|CPLX1|10815|complexin 1##AB593095|CPLX1|10815|complexin 1##BC002471|CPLX1|10815|complexin 1##NM_006651|CPLX1|10815|complexin 1##BT007015|GAK|2580|cyclin G associated kinase##D88435|GAK|2580|cyclin G associated kinase##BC063606|GAK|2580|cyclin G associated kinase##BC008668|GAK|2580|cyclin G associated kinase	0.998718	0.0	denovo_WM_7:19:0.239	denovo_WM_7:20:0.239	denovo_WM_7:21:0.239	denovo_WM_7:22:0.239
chr13	54203663	54203771	reg1011619.p2	4.117	+	AK000683 NM_006418 BC117329 TSC_hg19_v1_chr13_+_53602947 AY358567 HQ258281 AF097021 AK300947	-600805	+	AF061573 AK293747 AK297652 BC036025 NM_002590 NM_032949 TSC_hg19_v1_chr13_-_53422776	-780942	-	TSC_hg19_v1_chr13_-_53313956 BC025659 NM_001011705 NM_007015	-889755	-	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3511399	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3517969	+	AK097615 NM_001130404 NM_001130405 NM_001130406 NM_001130407 NM_198441 BC120931 BC120932	3524542	+	AK000683|OLFM4|10562|olfactomedin 4##NM_006418|OLFM4|10562|olfactomedin 4##BC117329|OLFM4|10562|olfactomedin 4##AY358567|OLFM4|10562|olfactomedin 4##HQ258281|OLFM4|10562|olfactomedin 4##AF097021|OLFM4|10562|olfactomedin 4##AK300947|OLFM4|10562|olfactomedin 4##AF061573|PCDH8|5100|protocadherin 8##AK293747|PCDH8|5100|protocadherin 8##AK297652|PCDH8|5100|protocadherin 8##BC036025|PCDH8|5100|protocadherin 8##NM_002590|PCDH8|5100|protocadherin 8##NM_032949|PCDH8|5100|protocadherin 8##BC025659|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_001011705|LECT1|11061|leukocyte cell derived chemotaxin 1##NM_007015|LECT1|11061|leukocyte cell derived chemotaxin 1##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A##AK097615|PRR20A|122183|proline rich 20A##NM_001130404|PRR20B|729233|proline rich 20B##NM_001130405|PRR20C|729240|proline rich 20C##NM_001130406|PRR20D|729246|proline rich 20D##NM_001130407|PRR20E|729250|proline rich 20E##NM_198441|PRR20A|122183|proline rich 20A##BC120931|PRR20A|122183|proline rich 20A##BC120932|PRR20A|122183|proline rich 20A	1.988391	0.0	denovo_WM_7:80:0.980	denovo_WM_7:-93:0.228	denovo_WM_7:-94:0.228	denovo_WM_7:-95:0.228	denovo_WM_7:-96:0.228
chr21	43187414	43187512	reg1015476.p1	4.117	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-196	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-241	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-307380	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	112035	-	BC062323 AL833323 NM_199050	159326	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	186620	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	0.978705	0.0	denovo_WM_7:5:0.427	denovo_WM_7:6:0.253
chr22	39542934	39543087	reg1011668.p1	4.117	+	TSC_hg19_v1_chr22_-_39529023 BC128418	-13963	-	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	-49740	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	-69823	+	DQ064603 AB528611 EU446785 CU690844 BC051773 TSC_hg19_v1_chr22_-_39548584 NM_175709 AK124408	5557	-	TSC_hg19_v1_chr22_-_39636906 NM_033016 X83705	93899	-	CR541807 CU013138 CU013426 AB590092 TSC_hg19_v1_chr22_-_39639984 CR456538 X02744	97015	-	BC128418|CBX7|23492|chromobox homolog 7##NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##DQ064603|CBX7|23492|chromobox homolog 7##EU446785|CBX7|23492|chromobox homolog 7##BC051773|CBX7|23492|chromobox homolog 7##NM_175709|CBX7|23492|chromobox homolog 7##NM_033016|PDGFB|5155|platelet-derived growth factor beta polypeptide##X83705|PDGFB|5155|platelet-derived growth factor beta polypeptide##CR541807|PDGFB|5155|platelet-derived growth factor beta polypeptide##CU013138|PDGFB|5155|platelet-derived growth factor beta polypeptide##CU013426|PDGFB|5155|platelet-derived growth factor beta polypeptide##CR456538|PDGFB|5155|platelet-derived growth factor beta polypeptide##X02744|PDGFB|5155|platelet-derived growth factor beta polypeptide	1.992248	0.0	denovo_WM_7:89:0.560	denovo_WM_7:90:0.281	denovo_WM_7:104:0.332	denovo_WM_7:105:0.611
chr3	192618170	192618236	reg1011248.p2	4.117	+	AK312513 TSC_hg19_v1_chr3_-_192445344 BC022524 NM_004113	-172838	-	AK125307 NM_021032 TSC_hg19_v1_chr3_-_192126847	-491360	-	AY858112 NM_001083308	-1439252	+	BC013123 TSC_hg19_v1_chr3_-_192635639 AK290447 BX648517	17433	-	BC036194 BC045582 NM_178496	17738	-	TSC_hg19_v1_chr3_+_192958897 BC048095 NM_020386	340701	+	AK312513|FGF12|2257|fibroblast growth factor 12##BC022524|FGF12|2257|fibroblast growth factor 12##NM_004113|FGF12|2257|fibroblast growth factor 12##AK125307|FGF12|2257|fibroblast growth factor 12##NM_021032|FGF12|2257|fibroblast growth factor 12##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2##BC013123|MB21D2|151963|Mab-21 domain containing 2##AK290447|MB21D2|151963|Mab-21 domain containing 2##BX648517|MB21D2|151963|Mab-21 domain containing 2##BC036194|MB21D2|151963|Mab-21 domain containing 2##BC045582|MB21D2|151963|Mab-21 domain containing 2##NM_178496|MB21D2|151963|Mab-21 domain containing 2##BC048095|HRASLS|57110|HRAS-like suppressor##NM_020386|HRASLS|57110|HRAS-like suppressor	0.0	0.0	
chr5	176498683	176498776	reg1012332.p1	4.117	+	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	-49010	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	-65141	-	U51333 BC028129 NM_002115	-172406	-	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	15153	+	NM_022963 X57205 AF202063 EU826602 AF359241 AB590389 DQ893458 DQ896348 EU826603 JN007471 JN007472 JN007473 JN007474 JN007475 JN007476 JN007477 JN007478 JN007479 JN007480 JN007481 JN007482	17847	+	TSC_hg19_v1_chr5_+_176560037 AK126591	61301	+	AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4##NM_022963|FGFR4|2264|fibroblast growth factor receptor 4##X57205|FGFR4|2264|fibroblast growth factor receptor 4##AF202063|FGFR4|2264|fibroblast growth factor receptor 4##EU826602|FGFR4|2264|fibroblast growth factor receptor 4##AF359241|FGFR4|2264|fibroblast growth factor receptor 4##DQ893458|FGFR4|2264|fibroblast growth factor receptor 4##DQ896348|FGFR4|2264|fibroblast growth factor receptor 4##EU826603|FGFR4|2264|fibroblast growth factor receptor 4##AK126591|NSD1|64324|nuclear receptor binding SET domain protein 1	0.981485	0.0	denovo_WM_7:-36:0.873
chr8	60060069	60060226	reg1010179.p1	4.117	+	AB385385 DQ891665 DQ894852 AK000971 BC016665 AK302331 AB018351 NM_014729 TSC_hg19_v1_chr8_-_60031796	-28475	-	NM_003580 TSC_hg19_v1_chr8_-_59572413	-487736	-	BC041124 TSC_hg19_v1_chr8_-_59572386	-487761	-	BC015531 BC108929 BC082971 TSC_hg19_v1_chr8_-_61193958 BC069744 AK090655 AK289470 AK314538 AY075022 NM_004056	1133774	-	TSC_hg19_v1_chr8_+_61429488 NM_001242644 NM_002865	1369293	+	AK297576 TSC_hg19_v1_chr8_+_61429494	1369347	+	DQ891665|TOX|9760|thymocyte selection-associated high mobility group box##DQ894852|TOX|9760|thymocyte selection-associated high mobility group box##AK000971|TOX|9760|thymocyte selection-associated high mobility group box##BC016665|TOX|9760|thymocyte selection-associated high mobility group box##AK302331|TOX|9760|thymocyte selection-associated high mobility group box##AB018351|TOX|9760|thymocyte selection-associated high mobility group box##NM_014729|TOX|9760|thymocyte selection-associated high mobility group box##NM_003580|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC041124|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC015531|CA8|767|carbonic anhydrase VIII##BC108929|CA8|767|carbonic anhydrase VIII##BC069744|CA8|767|carbonic anhydrase VIII##AK090655|CA8|767|carbonic anhydrase VIII##AK289470|CA8|767|carbonic anhydrase VIII##AK314538|CA8|767|carbonic anhydrase VIII##AY075022|CA8|767|carbonic anhydrase VIII##NM_004056|CA8|767|carbonic anhydrase VIII##NM_001242644|RAB2A|5862|RAB2A, member RAS oncogene family##NM_002865|RAB2A|5862|RAB2A, member RAS oncogene family##AK297576|RAB2A|5862|RAB2A, member RAS oncogene family	0.0	0.0	
chr9	116281912	116282032	reg1000326.p2	4.117	+	AF463495 NM_130795 AK096840 BC042555 CU692096 AF490840	-18191	+	TSC_hg19_v1_chr9_+_116226007 AK125059 NM_017790 AK074977	-55958	+	AK128127 NM_144488	-74962	+	TSC_hg19_v1_chr9_+_116327336 AK289666 AK301515 AK310705 NM_134427	45360	+	AF006609 NM_021106	60967	+	U27655 AK125094 TSC_hg19_v1_chr9_+_116343207	61216	+	AF463495|RGS3|5998|regulator of G-protein signaling 3##NM_130795|RGS3|5998|regulator of G-protein signaling 3##AK096840|RGS3|5998|regulator of G-protein signaling 3##BC042555|RGS3|5998|regulator of G-protein signaling 3##AF490840|RGS3|5998|regulator of G-protein signaling 3##AK125059|RGS3|5998|regulator of G-protein signaling 3##NM_017790|RGS3|5998|regulator of G-protein signaling 3##AK074977|RGS3|5998|regulator of G-protein signaling 3##AK128127|RGS3|5998|regulator of G-protein signaling 3##NM_144488|RGS3|5998|regulator of G-protein signaling 3##AK289666|RGS3|5998|regulator of G-protein signaling 3##AK301515|RGS3|5998|regulator of G-protein signaling 3##AK310705|RGS3|5998|regulator of G-protein signaling 3##NM_134427|RGS3|5998|regulator of G-protein signaling 3##AF006609|RGS3|5998|regulator of G-protein signaling 3##NM_021106|RGS3|5998|regulator of G-protein signaling 3##U27655|RGS3|5998|regulator of G-protein signaling 3##AK125094|RGS3|5998|regulator of G-protein signaling 3	0.775299	0.0	denovo_WM_7:-7:0.775
chr9	77700578	77700714	reg1010221.p1	4.117	+	TSC_hg19_v1_chr9_-_77643332 BC034033 NM_152420	-57312	-	TSC_hg19_v1_chr9_-_77643210 AK299691	-57436	-	CU689816 EU832520 EU832602 TSC_hg19_v1_chr9_-_77643174	-57481	-	BC001366 TSC_hg19_v1_chr9_-_77703070 AK000566 AK097144 AK023413 BC036804 NM_001127603 NM_017881 BC026243	2442	-	TSC_hg19_v1_chr9_+_77703406 NM_012383	2754	+	TSC_hg19_v1_chr9_+_77703429 AK291511 AK222596 U63717 BC007459 AB528711 CU675669	2864	+	BC034033|C9orf41|138199|chromosome 9 open reading frame 41##NM_152420|C9orf41|138199|chromosome 9 open reading frame 41##AK299691|C9orf41|138199|chromosome 9 open reading frame 41##EU832520|C9orf41|138199|chromosome 9 open reading frame 41##EU832602|C9orf41|138199|chromosome 9 open reading frame 41##BC001366|C9orf95|54981|chromosome 9 open reading frame 95##AK000566|C9orf95|54981|chromosome 9 open reading frame 95##AK097144|C9orf95|54981|chromosome 9 open reading frame 95##AK023413|C9orf95|54981|chromosome 9 open reading frame 95##BC036804|C9orf95|54981|chromosome 9 open reading frame 95##NM_001127603|C9orf95|54981|chromosome 9 open reading frame 95##NM_017881|C9orf95|54981|chromosome 9 open reading frame 95##BC026243|C9orf95|54981|chromosome 9 open reading frame 95##NM_012383|OSTF1|26578|osteoclast stimulating factor 1##AK291511|OSTF1|26578|osteoclast stimulating factor 1##AK222596|OSTF1|26578|osteoclast stimulating factor 1##U63717|OSTF1|26578|osteoclast stimulating factor 1##BC007459|OSTF1|26578|osteoclast stimulating factor 1	1.229173	0.0	denovo_WM_7:2:0.213	denovo_WM_7:17:0.223
chr11	9587496	9587611	reg1010363.p1	4.116	+	NM_003442 BC020219 AK313330 TSC_hg19_v1_chr11_+_9482560 AK291133 AK297214 BC014458	-105010	+	BC004388 TSC_hg19_v1_chr11_-_9482148 BC036621	-105425	-	AK312885 TSC_hg19_v1_chr11_+_9406199 AF098799 BC114929	-181333	+	TSC_hg19_v1_chr11_+_9595216 NM_003390 U10564 BC070052	7660	+	X62048 TSC_hg19_v1_chr11_+_9595313	7772	+	BC051831 TSC_hg19_v1_chr11_+_9595437	7880	+	NM_003442|ZNF143|7702|zinc finger protein 143##BC020219|ZNF143|7702|zinc finger protein 143##AK313330|ZNF143|7702|zinc finger protein 143##AK291133|ZNF143|7702|zinc finger protein 143##AK297214|ZNF143|7702|zinc finger protein 143##BC014458|ZNF143|7702|zinc finger protein 143##BC004388|LOC644656|644656|uncharacterized LOC644656##BC036621|LOC644656|644656|uncharacterized LOC644656##AK312885|IPO7|10527|importin 7##AF098799|IPO7|10527|importin 7##BC114929|IPO7|10527|importin 7##NM_003390|WEE1|7465|WEE1 homolog (S. pombe)##U10564|WEE1|7465|WEE1 homolog (S. pombe)##BC070052|WEE1|7465|WEE1 homolog (S. pombe)##X62048|WEE1|7465|WEE1 homolog (S. pombe)##BC051831|WEE1|7465|WEE1 homolog (S. pombe)	0.774844	0.0	denovo_WM_7:7:0.713
chr12	83610081	83610207	reg1014504.p1	4.116	+	TSC_hg19_v1_chr12_+_83081158 AK299771 BC093852 BC143378 BC093854 AK315285 AB463319 AM393141	-528883	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	-529227	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	-529444	+	AK291207 AK022853 TSC_hg19_v1_chr12_-_85306547	1696399	-	TSC_hg19_v1_chr12_-_85306575 BC022253 BC070040	1696428	-	AK294945 TSC_hg19_v1_chr12_-_85306581 NM_001146335 NM_018057 NM_182767	1696448	-	AK299771|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093852|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC143378|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093854|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK315285|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AM393141|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK291207|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##AK022853|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##BC022253|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##BC070040|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##AK294945|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_001146335|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_018057|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_182767|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15	0.967301	0.0	denovo_WM_7:-24:0.917
chr1	40132838	40132918	reg1010051.p2	4.116	+	TSC_hg19_v1_chr1_-_40105343 NM_014571	-27533	-	AF311885 EU446871 TSC_hg19_v1_chr1_-_40105307 AB463718 AJ272215 BC006087	-27562	-	TSC_hg19_v1_chr1_-_40098640 AK300463	-34223	-	AF331801 AY028778 BC103879 BC103880 NM_032526	4831	-	TSC_hg19_v1_chr1_-_40157103 BC030827 AL136591 NM_016257 AK294412 AK312314 AK294813	24224	-	NM_001195007 NM_006112 NM_203456 TSC_hg19_v1_chr1_+_40204553 AK313666 BC008451 AL833576 AF104012 AF104013 AK094660 AK304694 BC107736	71660	+	NM_014571|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AF311885|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##EU446871|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AJ272215|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##BC006087|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AK300463|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AF331801|NT5C1A|84618|5'-nucleotidase, cytosolic IA##AY028778|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103879|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103880|NT5C1A|84618|5'-nucleotidase, cytosolic IA##NM_032526|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC030827|HPCAL4|51440|hippocalcin like 4##AL136591|HPCAL4|51440|hippocalcin like 4##NM_016257|HPCAL4|51440|hippocalcin like 4##AK294412|HPCAL4|51440|hippocalcin like 4##AK312314|HPCAL4|51440|hippocalcin like 4##AK294813|HPCAL4|51440|hippocalcin like 4##NM_001195007|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_006112|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_203456|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK313666|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC008451|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AL833576|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104012|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104013|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK094660|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK304694|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC107736|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)	0.991252	0.0	
chr2	19247370	19247545	reg1013945.p2	4.116	+	AF356185 BC141842 AK302200 BC136387 BC171761 AF417165 BC026076 AK302084 AK057444 AK302795 AK307653 AK097422 AK093464 AX748142 NM_001002006 NM_001199086 NM_001199087 NM_001199088 NM_001199103 NM_001199104 NM_033253	-476647	-	AB527206 AM393225 BC009830 AY358511 AF237952 TSC_hg19_v1_chr2_-_18741920 AK314994 NM_020905	-505541	-	AK314451 TSC_hg19_v1_chr2_+_18059931 BC015947 NM_002252 BC004148 BC004987	-1187503	+	BC025712 NM_145260 TSC_hg19_v1_chr2_-_19558385 AK074591	310922	-	AK022396 BC068572 TSC_hg19_v1_chr2_+_20068650 AK097927	821178	+	TSC_hg19_v1_chr2_-_20101456 BC050088	853971	-	AF356185|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC141842|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK302200|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC136387|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC171761|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AF417165|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC026076|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK302084|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK057444|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##AK302795|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK307653|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##AK097422|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK093464|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001002006|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199086|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199087|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199088|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199103|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##NM_001199104|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##NM_033253|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AM393225|RDH14|57665|retinol dehydrogenase 14 (all-trans/9-cis/11-cis)##BC009830|RDH14|57665|retinol dehydrogenase 14 (all-trans/9-cis/11-cis)##AY358511|RDH14|57665|retinol dehydrogenase 14 (all-trans/9-cis/11-cis)##AF237952|RDH14|57665|retinol dehydrogenase 14 (all-trans/9-cis/11-cis)##AK314994|RDH14|57665|retinol dehydrogenase 14 (all-trans/9-cis/11-cis)##NM_020905|RDH14|57665|retinol dehydrogenase 14 (all-trans/9-cis/11-cis)##AK314451|KCNS3|3790|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3##BC015947|KCNS3|3790|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3##NM_002252|KCNS3|3790|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3##BC004148|KCNS3|3790|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3##BC004987|KCNS3|3790|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3##BC025712|OSR1|130497|odd-skipped related 1 (Drosophila)##NM_145260|OSR1|130497|odd-skipped related 1 (Drosophila)##AK074591|OSR1|130497|odd-skipped related 1 (Drosophila)##AK022396|FLJ12334|400946|uncharacterized LOC400946##BC068572|FLJ12334|400946|uncharacterized LOC400946##AK097927|FLJ12334|400946|uncharacterized LOC400946	0.0	0.0	
chr10	104436046	104436128	reg1003852.p1	4.115	+	TSC_hg19_v1_chr10_+_104404226 NM_030912 BC021925 AF281046 AL360160 DQ892019 DQ895209 AF220034	-31803	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	-172268	+	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	-172368	+	TSC_hg19_v1_chr10_-_104474150 U07151 BC009841 AK312525 NM_004311	38010	-	BC022091 NM_178858 TSC_hg19_v1_chr10_+_104474392 AF462052 AK055711 AK308246	38258	+	TSC_hg19_v1_chr10_+_104503704 AK300871	67583	+	NM_030912|TRIM8|81603|tripartite motif containing 8##BC021925|TRIM8|81603|tripartite motif containing 8##AF281046|TRIM8|81603|tripartite motif containing 8##AL360160|TRIM8|81603|tripartite motif containing 8##DQ892019|TRIM8|81603|tripartite motif containing 8##DQ895209|TRIM8|81603|tripartite motif containing 8##AF220034|TRIM8|81603|tripartite motif containing 8##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##U07151|ARL3|403|ADP-ribosylation factor-like 3##BC009841|ARL3|403|ADP-ribosylation factor-like 3##AK312525|ARL3|403|ADP-ribosylation factor-like 3##NM_004311|ARL3|403|ADP-ribosylation factor-like 3##BC022091|SFXN2|118980|sideroflexin 2##NM_178858|SFXN2|118980|sideroflexin 2##AF462052|SFXN2|118980|sideroflexin 2##AK055711|SFXN2|118980|sideroflexin 2##AK308246|SFXN2|118980|sideroflexin 2##AK300871|C10orf26|54838|chromosome 10 open reading frame 26	0.99642	0.0	denovo_WM_7:-59:0.260	denovo_WM_7:-60:0.669
chr12	104752252	104752368	reg1014428.p1	4.115	+	TSC_hg19_v1_chr12_+_104697516 NM_001008394 AK098698 BC027612	-54782	+	AK128515 TSC_hg19_v1_chr12_+_104682642 AY344670 AY344671 AY344672 AY344680 AY344094 AY344096 AY344095 AY344678 AF077367 AY344679	-69698	+	D88687 TSC_hg19_v1_chr12_+_104681047 AK295067	-71224	+	TSC_hg19_v1_chr12_+_104850745 NM_001173982 NM_018413 AK313217	98384	+	AK290923 TSC_hg19_v1_chr12_+_104850752	98441	+	TSC_hg19_v1_chr12_+_104850778 BC013315	98461	+	NM_001008394|EID3|493861|EP300 interacting inhibitor of differentiation 3##AK098698|EID3|493861|EP300 interacting inhibitor of differentiation 3##BC027612|EID3|493861|EP300 interacting inhibitor of differentiation 3##AK128515|TXNRD1|7296|thioredoxin reductase 1##AY344670|TXNRD1|7296|thioredoxin reductase 1##AY344096|TXNRD1|7296|thioredoxin reductase 1##AY344095|TXNRD1|7296|thioredoxin reductase 1##AF077367|TXNRD1|7296|thioredoxin reductase 1##AY344679|TXNRD1|7296|thioredoxin reductase 1##D88687|TXNRD1|7296|thioredoxin reductase 1##AK295067|TXNRD1|7296|thioredoxin reductase 1##NM_001173982|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##NM_018413|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AK313217|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AK290923|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11	0.0	0.201145	CTCF.p2:35:0.201
chr17	15515841	15515960	reg1010995.p1	4.115	+	TSC_hg19_v1_chr17_-_15466802 BC011952 AK303475 AB074181 AK310363 NM_001135036 NM_001204478 NM_145301	-49042	-	BC029542 NM_001204477	-144976	-	AF334676 AK223534 BC031688 AK314327 AK057390 NM_031898	-270973	-	AK057407 NM_006382	7117	-	BC001564 CR457136 EU446937 HQ257965 AK002035 AK314557 TSC_hg19_v1_chr17_-_15554961 AB209899	38987	-	BC053514 BC067096 NM_006470	70292	-	BC011952|FAM18B2|201158|family with sequence similarity 18, member B2##AK303475|FAM18B2-CDRT4|100533496|FAM18B2-CDRT4 readthrough##AB074181|FAM18B2-CDRT4|100533496|FAM18B2-CDRT4 readthrough##AK310363|FAM18B2|201158|family with sequence similarity 18, member B2##NM_001135036|FAM18B2|201158|family with sequence similarity 18, member B2##NM_001204478|FAM18B2-CDRT4|100533496|FAM18B2-CDRT4 readthrough##NM_145301|FAM18B2|201158|family with sequence similarity 18, member B2##BC029542|CDRT4|284040|CMT1A duplicated region transcript 4##NM_001204477|CDRT4|284040|CMT1A duplicated region transcript 4##AF334676|TEKT3|64518|tektin 3##AK223534|TEKT3|64518|tektin 3##BC031688|TEKT3|64518|tektin 3##AK314327|TEKT3|64518|tektin 3##AK057390|TEKT3|64518|tektin 3##NM_031898|TEKT3|64518|tektin 3##AK057407|CDRT1|374286|CMT1A duplicated region transcript 1##NM_006382|CDRT1|374286|CMT1A duplicated region transcript 1##BC001564|TRIM16|10626|tripartite motif containing 16##CR457136|TRIM16|10626|tripartite motif containing 16##EU446937|TRIM16|10626|tripartite motif containing 16##HQ257965|TRIM16|10626|tripartite motif containing 16##AK002035|TRIM16|10626|tripartite motif containing 16##AK314557|TRIM16|10626|tripartite motif containing 16##BC053514|TRIM16|10626|tripartite motif containing 16##BC067096|TRIM16|10626|tripartite motif containing 16##NM_006470|TRIM16|10626|tripartite motif containing 16	0.984833	0.0	denovo_WM_7:-62:0.925
chr17	29149086	29149185	reg1010745.p2	4.115	+	TSC_hg19_v1_chr17_+_29058664 BC047718	-90447	+	BC096718 BC098126 BC098273 NM_015594	-262552	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-344702	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	2540	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	2628	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	9850	+	BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5	0.991778	0.0	
chr17	31190896	31190993	reg1013023.p1	4.115	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-376184	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-376347	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-376873	+	CU688936 AB385376 AB018270 BC146763 NM_015194	12951	-	TSC_hg19_v1_chr17_-_31204141 AK127942	13179	-	TSC_hg19_v1_chr17_-_31204196 BC030602	13269	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	1.283296	0.0	denovo_WM_7:89:0.212
chr6_qbl_hap6	4517969	4518138	reg1003570.p1	4.115	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr10	81134477	81134572	reg1008525.p2	4.114	+	TSC_hg19_v1_chr10_+_81107279 AB529152 CU678858 EU831447	-27237	+	BC013204 BC110299 TSC_hg19_v1_chr10_+_81107252	-27275	+	TSC_hg19_v1_chr10_+_81107228 M80254 BC005020	-27292	+	TSC_hg19_v1_chr10_-_81205381 AK308876 AK075279 BC053564 BC039249 BC028617 NM_153367	70736	-	BC070048 NM_001099692	137832	+	BC111571 K03475 BC157866 BC157890 BC171875 S69685 S69686 AK225599 AK298041 AK298074 AK298114 AK313179 AK316192 HQ021421 HQ021422 HQ021423 HQ021424 HQ021425 HQ021426 HQ021427 HQ021428 HQ021429 HQ021430 HQ021431 HQ021432 NM_001098668 S69680 S69681 S69683 S69791	185627	-	EU831447|PPIF|10105|peptidylprolyl isomerase F##BC013204|PPIF|10105|peptidylprolyl isomerase F##BC110299|PPIF|10105|peptidylprolyl isomerase F##M80254|PPIF|10105|peptidylprolyl isomerase F##BC005020|PPIF|10105|peptidylprolyl isomerase F##AK308876|ZCCHC24|219654|zinc finger, CCHC domain containing 24##AK075279|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC053564|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC039249|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC028617|ZCCHC24|219654|zinc finger, CCHC domain containing 24##NM_153367|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC070048|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##NM_001099692|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##BC111571|SFTPA2|729238|surfactant protein A2##K03475|SFTPA2|729238|surfactant protein A2##BC157866|SFTPA2|729238|surfactant protein A2##BC157890|SFTPA2|729238|surfactant protein A2##BC171875|SFTPA1|653509|surfactant protein A1##AK225599|SFTPA2|729238|surfactant protein A2##AK298041|SFTPA2|729238|surfactant protein A2##AK298074|SFTPA2|729238|surfactant protein A2##AK298114|SFTPA2|729238|surfactant protein A2##AK313179|SFTPA2|729238|surfactant protein A2##AK316192|SFTPA2|729238|surfactant protein A2##HQ021421|SFTPA2|729238|surfactant protein A2##HQ021422|SFTPA2|729238|surfactant protein A2##HQ021423|SFTPA2|729238|surfactant protein A2##HQ021424|SFTPA2|729238|surfactant protein A2##HQ021425|SFTPA2|729238|surfactant protein A2##HQ021426|SFTPA2|729238|surfactant protein A2##HQ021427|SFTPA2|729238|surfactant protein A2##HQ021428|SFTPA2|729238|surfactant protein A2##HQ021429|SFTPA2|729238|surfactant protein A2##HQ021430|SFTPA2|729238|surfactant protein A2##HQ021431|SFTPA2|729238|surfactant protein A2##HQ021432|SFTPA2|729238|surfactant protein A2##NM_001098668|SFTPA2|729238|surfactant protein A2	0.883751	1.012434	CTCF.p2:-14:1.000	denovo_WM_7:-87:0.847
chr19	49810332	49810469	reg1009357.p2	4.114	+	AK000048 TSC_hg19_v1_chr19_+_49669495	-140950	+	TSC_hg19_v1_chr19_+_49661048 AK074664 AF497623 AK292862 AY297044 AY297045 AY297046 AY046396 AJ575813 BC132727 BC144122 BC144123 AK295820	-149334	+	AK307897 NM_001195227 NM_017636 TSC_hg19_v1_chr19_+_49661029	-149387	+	BC034948 BC039336 NM_014037	18053	-	TSC_hg19_v1_chr19_+_49838662 AK301016	28258	+	TSC_hg19_v1_chr19_+_49838683 NM_001040031 NM_001774 AK301328	28278	+	AK000048|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AF497623|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK292862|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297044|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297045|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY297046|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AY046396|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AJ575813|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC132727|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144122|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC144123|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK295820|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##AK307897|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##NM_001195227|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##NM_017636|TRPM4|54795|transient receptor potential cation channel, subfamily M, member 4##BC034948|SLC6A16|28968|solute carrier family 6, member 16##NM_014037|SLC6A16|28968|solute carrier family 6, member 16##AK301016|CD37|951|CD37 molecule##NM_001040031|CD37|951|CD37 molecule##NM_001774|CD37|951|CD37 molecule##AK301328|CD37|951|CD37 molecule	0.992818	0.0	denovo_WM_7:-84:0.837
chr22	22121413	22121562	reg1011061.p1	4.114	+	BC034486 BC074501 TSC_hg19_v1_chr22_-_22090057 BC048303 NM_013313 AB098734 AB098735	-31439	-	NM_014337 NM_148175 NM_148176 TSC_hg19_v1_chr22_+_22020298 AF320072 AK289545 BC000022 U37219 AK127259 BC028385 AK299206 CR456548 DQ891659 DQ894846 AB463162 CU013148 CU013436 CU673996 CU688484	-101158	+	TSC_hg19_v1_chr22_+_21996619 CR456570 AF277316 AB528230 BC139837 CU013169 CU013457	-124848	+	TSC_hg19_v1_chr22_-_22221936 DQ399292 AB384931 EU176323 EU831429 EU831522 AK307615 Z11694 AK090869 BC099905	100342	-	AK295188 TSC_hg19_v1_chr22_-_22221938	100450	-	TSC_hg19_v1_chr22_-_22221955 BC017832 NM_002745 NM_138957	100483	-	BC034486|YPEL1|29799|yippee-like 1 (Drosophila)##BC074501|YPEL1|29799|yippee-like 1 (Drosophila)##BC048303|YPEL1|29799|yippee-like 1 (Drosophila)##NM_013313|YPEL1|29799|yippee-like 1 (Drosophila)##AB098734|YPEL1|29799|yippee-like 1 (Drosophila)##AB098735|YPEL1|29799|yippee-like 1 (Drosophila)##NM_014337|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148175|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148176|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AF320072|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK289545|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC000022|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##U37219|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK127259|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC028385|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK299206|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456548|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ891659|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ894846|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013148|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013436|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456570|SDF2L1|23753|stromal cell-derived factor 2-like 1##AF277316|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC139837|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013169|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013457|SDF2L1|23753|stromal cell-derived factor 2-like 1##DQ399292|MAPK1|5594|mitogen-activated protein kinase 1##EU176323|MAPK1|5594|mitogen-activated protein kinase 1##EU831429|MAPK1|5594|mitogen-activated protein kinase 1##EU831522|MAPK1|5594|mitogen-activated protein kinase 1##AK307615|MAPK1|5594|mitogen-activated protein kinase 1##Z11694|MAPK1|5594|mitogen-activated protein kinase 1##AK090869|MAPK1|5594|mitogen-activated protein kinase 1##BC099905|MAPK1|5594|mitogen-activated protein kinase 1##AK295188|MAPK1|5594|mitogen-activated protein kinase 1##BC017832|MAPK1|5594|mitogen-activated protein kinase 1##NM_002745|MAPK1|5594|mitogen-activated protein kinase 1##NM_138957|MAPK1|5594|mitogen-activated protein kinase 1	0.0	0.0	
chr7	48124601	48124770	reg1012584.p1	4.114	+	BC045737 BC031107 NM_001100159	-49574	+	AK302011 BC026189 AF429967 NM_001030019 NM_152782	-56006	-	TSC_hg19_v1_chr7_-_48019247 NM_004507	-105456	-	TSC_hg19_v1_chr7_+_48128282 BC007348 NM_181597	3604	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	4115	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	4270	+	BC045737|C7orf57|136288|chromosome 7 open reading frame 57##BC031107|C7orf57|136288|chromosome 7 open reading frame 57##NM_001100159|C7orf57|136288|chromosome 7 open reading frame 57##AK302011|SUN3|256979|Sad1 and UNC84 domain containing 3##BC026189|SUN3|256979|Sad1 and UNC84 domain containing 3##AF429967|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_001030019|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_152782|SUN3|256979|Sad1 and UNC84 domain containing 3##NM_004507|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007348|UPP1|7378|uridine phosphorylase 1##NM_181597|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1	0.0	0.0	
chr10	27171011	27171149	reg1010517.p1	4.113	+	TSC_hg19_v1_chr10_-_27149997 NM_001012750 NM_001012751 NM_001012752 NM_001178116 NM_001178119 NM_001178120 NM_001178121 NM_001178122 NM_001178123 NM_001178124 NM_001178125 NM_005470	-21075	-	TSC_hg19_v1_chr10_-_27149916 AF260262 AK298646 AK126803 AB040151	-21141	-	AB529081 FJ380057 FJ380058 FJ380059 TSC_hg19_v1_chr10_-_27149883 AF540955 AK296751 AF001628 AF006516 BC013238 U87166 AB209268 BC024254 AK291823	-21240	-	BC130453 TSC_hg19_v1_chr10_-_27389422 AB028997 AK001137 NM_014915	218304	-	AB384745 CU692788 BC019602 TSC_hg19_v1_chr10_-_27443272 AY358484 AK314372 AK291292	272127	-	TSC_hg19_v1_chr10_-_27443304 BC007795 BC023507 BC024032	272211	-	NM_001012750|ABI1|10006|abl-interactor 1##NM_001012751|ABI1|10006|abl-interactor 1##NM_001012752|ABI1|10006|abl-interactor 1##NM_001178116|ABI1|10006|abl-interactor 1##NM_001178119|ABI1|10006|abl-interactor 1##NM_001178120|ABI1|10006|abl-interactor 1##NM_001178121|ABI1|10006|abl-interactor 1##NM_001178122|ABI1|10006|abl-interactor 1##NM_001178123|ABI1|10006|abl-interactor 1##NM_001178124|ABI1|10006|abl-interactor 1##NM_001178125|ABI1|10006|abl-interactor 1##NM_005470|ABI1|10006|abl-interactor 1##AF260262|ABI1|10006|abl-interactor 1##AK298646|ABI1|10006|abl-interactor 1##AK126803|ABI1|10006|abl-interactor 1##AB040151|ABI1|10006|abl-interactor 1##FJ380057|ABI1|10006|abl-interactor 1##FJ380058|ABI1|10006|abl-interactor 1##FJ380059|ABI1|10006|abl-interactor 1##AF540955|ABI1|10006|abl-interactor 1##AK296751|ABI1|10006|abl-interactor 1##AF001628|ABI1|10006|abl-interactor 1##AF006516|ABI1|10006|abl-interactor 1##BC013238|ABI1|10006|abl-interactor 1##U87166|ABI1|10006|abl-interactor 1##AB209268|ABI1|10006|abl-interactor 1##BC024254|ABI1|10006|abl-interactor 1##AK291823|ABI1|10006|abl-interactor 1##BC130453|ANKRD26|22852|ankyrin repeat domain 26##AB028997|ANKRD26|22852|ankyrin repeat domain 26##AK001137|ANKRD26|22852|ankyrin repeat domain 26##NM_014915|ANKRD26|22852|ankyrin repeat domain 26##BC019602|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AY358484|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK314372|YME1L1|10730|YME1-like 1 (S. cerevisiae)##AK291292|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC007795|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC023507|YME1L1|10730|YME1-like 1 (S. cerevisiae)##BC024032|YME1L1|10730|YME1-like 1 (S. cerevisiae)	0.0	0.0	
chr1	199010774	199010954	reg1011595.p2	4.113	+	TSC_hg19_v1_chr1_-_198906559 EF413001	-104317	-	TSC_hg19_v1_chr1_+_198608244 BC121086 BC121087 BC127656 BC127657 BC148257 AY567999 AB527417 AY429565 AY429566	-402534	+	TSC_hg19_v1_chr1_+_198608224 AK307635 AK130573 AK292131 AK299986 AK303539 BC017863 Y00638 BC014239 BC031525	-402639	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	986005	+	AK316513 TSC_hg19_v1_chr1_+_200011716	1000860	+	NM_001105517	1171791	+	EF413001|LOC100131234|100131234|familial acute myelogenous leukemia related factor##BC121086|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC121087|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127656|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC127657|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC148257|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY567999|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AY429565|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK307635|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK130573|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK292131|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK299986|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##AK303539|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC017863|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##Y00638|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC014239|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##BC031525|PTPRC|5788|protein tyrosine phosphatase, receptor type, C##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene	0.0	0.0	
chr12	74931071	74931198	reg1013022.p1	4.113	+	TSC_hg19_v1_chr12_-_72667288 BC040230	-2263864	-	AF126372 TSC_hg19_v1_chr12_+_72666537 BC142706 BC150181 NM_013381 AY358765	-2264630	+	AK095156 TSC_hg19_v1_chr12_-_72666355	-2264791	-	NM_001136262 TSC_hg19_v1_chr12_+_74931614 AK056642	451	+	TSC_hg19_v1_chr12_+_74931622 BC009111 AL713650	505	+	AK054742 TSC_hg19_v1_chr12_+_74933681	2486	+	BC040230|LOC283392|283392|uncharacterized LOC283392##AF126372|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##BC142706|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##BC150181|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##NM_013381|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##AY358765|TRHDE|29953|thyrotropin-releasing hormone degrading enzyme##AK095156|LOC283392|283392|uncharacterized LOC283392##NM_001136262|ATXN7L3B|552889|ataxin 7-like 3B##AK056642|ATXN7L3B|552889|ataxin 7-like 3B##BC009111|ATXN7L3B|552889|ataxin 7-like 3B##AL713650|ATXN7L3B|552889|ataxin 7-like 3B	0.0	0.420397	CTCF.p2:47:0.420
chr17	38278232	38278331	reg1011203.p1	4.113	+	CR749360 TSC_hg19_v1_chr17_+_38278225	-59	+	TSC_hg19_v1_chr17_-_38256983 M24898 NM_021724	-21307	-	M34339 X72631 TSC_hg19_v1_chr17_-_38256833 BC047875 AK315270 AK300155 BC056148	-21559	-	NM_001012241 BC118997 BC122543	546	+	EU831932 EU832027 TSC_hg19_v1_chr17_+_38279490	1198	+	NM_007359 TSC_hg19_v1_chr17_+_38296550 AK292425 AK310635 X80199 BC050526 BC044656	18285	+	CR749360|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##M24898|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##NM_021724|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##M34339|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##X72631|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##BC047875|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##AK315270|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##AK300155|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##BC056148|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##NM_001012241|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##BC118997|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##BC122543|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##EU831932|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##EU832027|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##NM_007359|CASC3|22794|cancer susceptibility candidate 3##AK292425|CASC3|22794|cancer susceptibility candidate 3##AK310635|CASC3|22794|cancer susceptibility candidate 3##X80199|CASC3|22794|cancer susceptibility candidate 3##BC050526|CASC3|22794|cancer susceptibility candidate 3##BC044656|CASC3|22794|cancer susceptibility candidate 3	0.0	0.0	
chr19	39612958	39613138	reg1009806.p2	4.113	+	AK131245 NM_001004318	-38104	+	TSC_hg19_v1_chr19_-_39523185 BC030060 AF436061 BC014527 NM_178820	-89815	-	CU677033 TSC_hg19_v1_chr19_-_39522905	-90149	-	TSC_hg19_v1_chr19_+_39616436 AK294586 NM_001014831 NM_001014832 NM_001014834 NM_001014835 NM_005884 AK293517 AK291839 AX775863 AX775865 AK300632 BC002921 AX775871 BC034511 AK304651 BC011368 AL834236 AX775867 AX775869 BC025282 AF005046 AB032968	3397	+	BC092493 AK123941 BC067874 NM_001001414 TSC_hg19_v1_chr19_+_39687603	74554	+	BC039541 AK130951 TSC_hg19_v1_chr19_-_39694904 BC121075 BC121076 NM_001080468	81850	-	AK131245|PAPL|390928|iron/zinc purple acid phosphatase-like protein##NM_001004318|PAPL|390928|iron/zinc purple acid phosphatase-like protein##BC030060|FBXO27|126433|F-box protein 27##AF436061|FBXO27|126433|F-box protein 27##BC014527|FBXO27|126433|F-box protein 27##NM_178820|FBXO27|126433|F-box protein 27##AK294586|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014831|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014832|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014834|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_001014835|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##NM_005884|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK293517|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK291839|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775863|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775865|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK300632|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC002921|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775871|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC034511|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AK304651|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC011368|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AL834236|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775867|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AX775869|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC025282|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AF005046|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##AB032968|PAK4|10298|p21 protein (Cdc42/Rac)-activated kinase 4##BC092493|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##AK123941|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##BC067874|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##NM_001001414|NCCRP1|342897|non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)##BC039541|SYCN|342898|syncollin##AK130951|SYCN|342898|syncollin##BC121075|SYCN|342898|syncollin##BC121076|SYCN|342898|syncollin##NM_001080468|SYCN|342898|syncollin	0.988503	0.0	denovo_WM_7:51:0.819
chr22	32184268	32184379	reg1010992.p2	4.113	+	NM_001136029 AB014545 BC146766 AJ698950 AJ698951 AJ704764 AB383936 CU691240	-33446	+	TSC_hg19_v1_chr22_+_32150004 NM_001007188 NM_001242896 NM_014662 AK300737 BC057797 BC136612 BC144291	-34275	+	TSC_hg19_v1_chr22_+_32149962 AK294987	-34360	+	TSC_hg19_v1_chr22_+_32340520 NM_003405 X78138 BC003047 S80794	156165	+	TSC_hg19_v1_chr22_+_32340608 AK312650 CR456612 AB385077 L20422 CU013208 CU013496	156332	+	AJ704765 AJ704766 AL050256 NM_015372 AK315264	156998	-	NM_001136029|DEPDC5|9681|DEP domain containing 5##AB014545|DEPDC5|9681|DEP domain containing 5##BC146766|DEPDC5|9681|DEP domain containing 5##AJ698950|DEPDC5|9681|DEP domain containing 5##AJ698951|DEPDC5|9681|DEP domain containing 5##AJ704764|DEPDC5|9681|DEP domain containing 5##NM_001007188|DEPDC5|9681|DEP domain containing 5##NM_001242896|DEPDC5|9681|DEP domain containing 5##NM_014662|DEPDC5|9681|DEP domain containing 5##AK300737|DEPDC5|9681|DEP domain containing 5##BC057797|DEPDC5|9681|DEP domain containing 5##BC136612|DEPDC5|9681|DEP domain containing 5##BC144291|DEPDC5|9681|DEP domain containing 5##AK294987|DEPDC5|9681|DEP domain containing 5##NM_003405|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##X78138|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##BC003047|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##S80794|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AK312650|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CR456612|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##L20422|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013208|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##CU013496|YWHAH|7533|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide##AJ704765|C22orf24|25775|chromosome 22 open reading frame 24##AJ704766|C22orf24|25775|chromosome 22 open reading frame 24##AL050256|C22orf24|25775|chromosome 22 open reading frame 24##NM_015372|C22orf24|25775|chromosome 22 open reading frame 24##AK315264|C22orf24|25775|chromosome 22 open reading frame 24	1.659553	0.0	
chr6	138408300	138408409	reg1012950.p2	4.113	+	TSC_hg19_v1_chr6_-_138189314 AK124173	-219004	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	-219817	+	BC051352 AK096362 NM_175747	-592829	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	20214	-	TSC_hg19_v1_chr6_+_138483075 AB252196 NM_020340	74782	+	BC069109 NM_021635 AF189269 AF189270	131272	-	AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector##AB252196|KIAA1244|57221|KIAA1244##NM_020340|KIAA1244|57221|KIAA1244##BC069109|PBOV1|59351|prostate and breast cancer overexpressed 1##NM_021635|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189269|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189270|PBOV1|59351|prostate and breast cancer overexpressed 1	0.0	0.0	
chr10	88264852	88264987	reg1006318.p1	4.112	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-138656	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-2080224	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2133301	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	16575	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	16611	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	149475	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.948005	0.0	denovo_WM_7:28:0.468	denovo_WM_7:31:0.251
chr12	95612312	95612399	reg1009726.p1	4.112	+	TSC_hg19_v1_chr12_+_95611582 NM_017599 AK001338 AK225303 AK309943 AK225356 BC014443 AK307864 AL137497 BC064939 BC028597	-661	+	TSC_hg19_v1_chr12_-_95611206 BC125225 BC125226 BX538322 AK124904 NM_018351	-1119	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	-145057	-	TSC_hg19_v1_chr12_+_95676175 AL133113	63863	+	NM_006838 AK300836 TSC_hg19_v1_chr12_+_95867927 AK315559 U13261 AK055692 U29607 BC013782 AK091730 AX747149 AB463882 DQ891013 DQ894193	255542	+	AK027434 TSC_hg19_v1_chr12_-_95942575 BC030704 NM_001042403	330259	-	NM_017599|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK001338|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225303|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK309943|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225356|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC014443|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK307864|VEZT|55591|vezatin, adherens junctions transmembrane protein##AL137497|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC064939|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC028597|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC125225|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BC125226|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BX538322|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##AK124904|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##NM_018351|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AL133113|VEZT|55591|vezatin, adherens junctions transmembrane protein##NM_006838|METAP2|10988|methionyl aminopeptidase 2##AK300836|METAP2|10988|methionyl aminopeptidase 2##AK315559|METAP2|10988|methionyl aminopeptidase 2##U13261|METAP2|10988|methionyl aminopeptidase 2##AK055692|METAP2|10988|methionyl aminopeptidase 2##BC013782|METAP2|10988|methionyl aminopeptidase 2##AK091730|METAP2|10988|methionyl aminopeptidase 2##DQ891013|METAP2|10988|methionyl aminopeptidase 2##DQ894193|METAP2|10988|methionyl aminopeptidase 2##AK027434|USP44|84101|ubiquitin specific peptidase 44##BC030704|USP44|84101|ubiquitin specific peptidase 44##NM_001042403|USP44|84101|ubiquitin specific peptidase 44	0.0	0.0	
chr17	42295667	42295847	reg1000244.p1	4.112	+	TSC_hg19_v1_chr17_-_42277350 AK296689	-18372	-	BC037418 HQ258188 TSC_hg19_v1_chr17_-_42275499 BC113595 BC126113 NM_001098833 NM_020218	-20281	-	TSC_hg19_v1_chr17_+_42264588 AF370373	-31140	+	AK291733 TSC_hg19_v1_chr17_-_42296871	1121	-	X56687 TSC_hg19_v1_chr17_-_42296940	1175	-	TSC_hg19_v1_chr17_-_42297051 NM_001076684 NM_014233	1287	-	AK296689|ATXN7L3|56970|ataxin 7-like 3##BC037418|ATXN7L3|56970|ataxin 7-like 3##HQ258188|ATXN7L3|56970|ataxin 7-like 3##BC113595|ATXN7L3|56970|ataxin 7-like 3##BC126113|ATXN7L3|56970|ataxin 7-like 3##NM_001098833|ATXN7L3|56970|ataxin 7-like 3##NM_020218|ATXN7L3|56970|ataxin 7-like 3##AF370373|TMUB2|79089|transmembrane and ubiquitin-like domain containing 2##AK291733|UBTF|7343|upstream binding transcription factor, RNA polymerase I##X56687|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076684|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_014233|UBTF|7343|upstream binding transcription factor, RNA polymerase I	0.0	0.0	
chr18	49748331	49748478	reg1012143.p1	4.112	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-1024364	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-1024692	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-1025178	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	118137	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	118709	+	TSC_hg19_v1_chr18_-_51690988 AL110266	1942588	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	1.229075	0.0	denovo_WM_7:-27:0.239	denovo_WM_7:-28:0.239	denovo_WM_7:-29:0.239	denovo_WM_7:-30:0.239
chr2	122357517	122357672	reg1013284.p1	4.112	+	AK297259 TSC_hg19_v1_chr2_-_122247924	-109675	-	TSC_hg19_v1_chr2_-_122159142 CR749627	-198439	-	TSC_hg19_v1_chr2_-_122042779 AF198488 BC064698 AL137740 NM_014553	-314821	-	TSC_hg19_v1_chr2_-_122407024 BC112940 AK091140 AX746802 BC132723 BC144107 AK299331 AJ288057 NM_001142273 NM_001142274 NM_001207051 NM_015282	49428	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	50051	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	136871	-	AK297259|CLASP1|23332|cytoplasmic linker associated protein 1##CR749627|CLASP1|23332|cytoplasmic linker associated protein 1##AF198488|TFCP2L1|29842|transcription factor CP2-like 1##BC064698|TFCP2L1|29842|transcription factor CP2-like 1##AL137740|TFCP2L1|29842|transcription factor CP2-like 1##NM_014553|TFCP2L1|29842|transcription factor CP2-like 1##BC112940|CLASP1|23332|cytoplasmic linker associated protein 1##AK091140|CLASP1|23332|cytoplasmic linker associated protein 1##BC132723|CLASP1|23332|cytoplasmic linker associated protein 1##BC144107|CLASP1|23332|cytoplasmic linker associated protein 1##AK299331|CLASP1|23332|cytoplasmic linker associated protein 1##AJ288057|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142273|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001142274|CLASP1|23332|cytoplasmic linker associated protein 1##NM_001207051|CLASP1|23332|cytoplasmic linker associated protein 1##NM_015282|CLASP1|23332|cytoplasmic linker associated protein 1##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein	0.996443	0.0	
chr9	135924055	135924127	reg1010589.p1	4.112	+	TSC_hg19_v1_chr9_+_135906386 AK000194 AK097295 AK293980 BC006409 AY007123 DQ892071 DQ895265 AJ420443 BC030157	-17703	+	NM_001122823 NM_012087 TSC_hg19_v1_chr9_+_135906094 AK225761 AK311481 AK055092 AF133124 BC011355 BC017337	-17992	+	TSC_hg19_v1_chr9_+_135894809 BC070500	-29284	+	NM_001807 S79774 M85201 BC042510 AK299965	13284	+	TSC_hg19_v1_chr9_-_135996628 AK074114 GQ129265 GQ129266 AF295773 NM_006266 BC059362	72408	-	AF027169 TSC_hg19_v1_chr9_-_136024565 NM_001042368	100595	-	AK000194|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK097295|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK293980|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC006409|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AY007123|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##DQ892071|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##DQ895265|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AJ420443|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC030157|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##NM_001122823|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##NM_012087|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK225761|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK311481|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AK055092|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##AF133124|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC011355|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC017337|GTF3C5|9328|general transcription factor IIIC, polypeptide 5, 63kDa##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001807|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##S79774|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##M85201|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##BC042510|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##AK299965|CEL|1056|carboxyl ester lipase (bile salt-stimulated lipase)##AK074114|RALGDS|5900|ral guanine nucleotide dissociation stimulator##GQ129265|RALGDS|5900|ral guanine nucleotide dissociation stimulator##GQ129266|RALGDS|5900|ral guanine nucleotide dissociation stimulator##AF295773|RALGDS|5900|ral guanine nucleotide dissociation stimulator##NM_006266|RALGDS|5900|ral guanine nucleotide dissociation stimulator##BC059362|RALGDS|5900|ral guanine nucleotide dissociation stimulator##AF027169|RALGDS|5900|ral guanine nucleotide dissociation stimulator##NM_001042368|RALGDS|5900|ral guanine nucleotide dissociation stimulator	0.835511	0.682582	CTCF.p2:11:0.683	denovo_WM_7:-25:0.287	denovo_WM_7:-26:0.343	denovo_WM_7:-28:0.206
chrX	63647303	63647391	reg1013100.p1	4.112	+	AK298847 NM_017677 TSC_hg19_v1_chrX_-_63615334	-32004	-	CU680314 TSC_hg19_v1_chrX_-_63615324 BC012399	-32063	-	AK096896 AK300684 NM_130388	-196849	-	TSC_hg19_v1_chrX_-_64139018 AK001547	491694	-	TSC_hg19_v1_chrX_-_64196331 AK022918 AK123763 AK315485 AK222708 AK293570 AF270491 BC004411 AB032992 NM_001178033 NM_018684	549002	-	AK022807 TSC_hg19_v1_chrX_-_64254616 NM_001178032 NM_001243804	607290	-	NM_017677|MTMR8|55613|myotubularin related protein 8##BC012399|MTMR8|55613|myotubularin related protein 8##AK096896|ASB12|142689|ankyrin repeat and SOCS box containing 12##AK300684|ASB12|142689|ankyrin repeat and SOCS box containing 12##NM_130388|ASB12|142689|ankyrin repeat and SOCS box containing 12##AK001547|ZC4H2|55906|zinc finger, C4H2 domain containing##AK022918|ZC4H2|55906|zinc finger, C4H2 domain containing##AK123763|ZC4H2|55906|zinc finger, C4H2 domain containing##AK315485|ZC4H2|55906|zinc finger, C4H2 domain containing##AK222708|ZC4H2|55906|zinc finger, C4H2 domain containing##AK293570|ZC4H2|55906|zinc finger, C4H2 domain containing##AF270491|ZC4H2|55906|zinc finger, C4H2 domain containing##BC004411|ZC4H2|55906|zinc finger, C4H2 domain containing##AB032992|ZC4H2|55906|zinc finger, C4H2 domain containing##NM_001178033|ZC4H2|55906|zinc finger, C4H2 domain containing##NM_018684|ZC4H2|55906|zinc finger, C4H2 domain containing##AK022807|ZC4H2|55906|zinc finger, C4H2 domain containing##NM_001178032|ZC4H2|55906|zinc finger, C4H2 domain containing##NM_001243804|ZC4H2|55906|zinc finger, C4H2 domain containing	1.724763	0.0	denovo_WM_7:88:0.330	denovo_WM_7:89:0.329	denovo_WM_7:90:0.306	denovo_WM_7:106:0.660
chr17	43212727	43212904	reg1012895.p1	4.111	+	NM_001135704 TSC_hg19_v1_chr17_+_43209980 BC041143	-2833	+	AB075844 AL834392 AB384653 TSC_hg19_v1_chr17_-_43209885 BC072384 AK074240 NM_133373	-3000	-	TSC_hg19_v1_chr17_+_43138687 BC006538 BC006569 NM_021079 AF043324 AK291936 AK303517 AB527516 BC008579 AF020500	-74123	+	AK316359 NM_001135705 NM_001135706 NM_001135707 NM_024722 BC022000 AK296167 TSC_hg19_v1_chr17_+_43213056 AK023384 AK075104 BC029164 AB073387	242	+	NM_006460	11868	+	TSC_hg19_v1_chr17_+_43225841 AK023624 AB021179	13036	+	NM_001135704|ACBD4|79777|acyl-CoA binding domain containing 4##BC041143|ACBD4|79777|acyl-CoA binding domain containing 4##AB075844|PLCD3|113026|phospholipase C, delta 3##AL834392|PLCD3|113026|phospholipase C, delta 3##BC072384|PLCD3|113026|phospholipase C, delta 3##AK074240|PLCD3|113026|phospholipase C, delta 3##NM_133373|PLCD3|113026|phospholipase C, delta 3##BC006538|NMT1|4836|N-myristoyltransferase 1##BC006569|NMT1|4836|N-myristoyltransferase 1##NM_021079|NMT1|4836|N-myristoyltransferase 1##AF043324|NMT1|4836|N-myristoyltransferase 1##AK291936|NMT1|4836|N-myristoyltransferase 1##AK303517|NMT1|4836|N-myristoyltransferase 1##BC008579|NMT1|4836|N-myristoyltransferase 1##AF020500|NMT1|4836|N-myristoyltransferase 1##AK316359|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135705|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135706|ACBD4|79777|acyl-CoA binding domain containing 4##NM_001135707|ACBD4|79777|acyl-CoA binding domain containing 4##NM_024722|ACBD4|79777|acyl-CoA binding domain containing 4##BC022000|ACBD4|79777|acyl-CoA binding domain containing 4##AK296167|ACBD4|79777|acyl-CoA binding domain containing 4##AK023384|ACBD4|79777|acyl-CoA binding domain containing 4##AK075104|ACBD4|79777|acyl-CoA binding domain containing 4##BC029164|ACBD4|79777|acyl-CoA binding domain containing 4##AB073387|ACBD4|79777|acyl-CoA binding domain containing 4##NM_006460|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AK023624|HEXIM1|10614|hexamethylene bis-acetamide inducible 1##AB021179|HEXIM1|10614|hexamethylene bis-acetamide inducible 1	0.0	1.797047	CTCF.p2:14:0.798	CTCF.p2:-25:0.999
chr22	24165059	24165133	reg1017220.p1	4.111	+	TSC_hg19_v1_chr22_+_24129164 AK024025 NM_001007468 NM_003073 AK303620 AK021419 AK299411 AJ011737 AJ011738 U04847 BC117114 BC143667 CR456581 AL389878 AB463295 CU013180 CU013468 HQ258224 AB017523	-35847	+	AK075448 AK129792 NM_005940 X57766 BC057788	-50051	+	TSC_hg19_v1_chr22_-_24110129 BC053570 AK289560 BC065232 NM_213720	-54984	-	AB528119 CU013077 CU013365 CU691264 TSC_hg19_v1_chr22_-_24181194 AK096976 AK125830 BC057830 CR456372 AL389876 NM_001002862 NM_001135751 NM_198440	16089	-	AF443201 AJ271290 NM_001024938 NM_030807 AK314502 AK315937 AK075467 AK296169 AK308602 BC063525 BC100807 BC100808 BC100809 BC100810 AK300196 TSC_hg19_v1_chr22_+_24199338	34102	+	NM_001024939 TSC_hg19_v1_chr22_+_24200061 AK304409 AK308589 AK316049 CR456373 AB463269 CU013078 CU013366	35017	+	AK024025|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_001007468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##NM_003073|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK303620|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK021419|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK299411|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011737|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AJ011738|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC117114|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##BC143667|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CR456581|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AL389878|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013180|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##CU013468|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##HQ258224|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AB017523|SMARCB1|6598|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1##AK075448|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##AK129792|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##NM_005940|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##X57766|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC057788|MMP11|4320|matrix metallopeptidase 11 (stromelysin 3)##BC053570|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##AK289560|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##BC065232|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##NM_213720|CHCHD10|400916|coiled-coil-helix-coiled-coil-helix domain containing 10##CU013077|DERL3|91319|Der1-like domain family, member 3##CU013365|DERL3|91319|Der1-like domain family, member 3##AK096976|DERL3|91319|Der1-like domain family, member 3##AK125830|DERL3|91319|Der1-like domain family, member 3##BC057830|DERL3|91319|Der1-like domain family, member 3##CR456372|DERL3|91319|Der1-like domain family, member 3##AL389876|DERL3|91319|Der1-like domain family, member 3##NM_001002862|DERL3|91319|Der1-like domain family, member 3##NM_001135751|DERL3|91319|Der1-like domain family, member 3##NM_198440|DERL3|91319|Der1-like domain family, member 3##AF443201|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AJ271290|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024938|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_030807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK314502|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK315937|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK075467|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK296169|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308602|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC063525|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100807|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100808|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100809|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##BC100810|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK300196|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##NM_001024939|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK304409|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK308589|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##AK316049|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CR456373|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013078|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11##CU013366|SLC2A11|66035|solute carrier family 2 (facilitated glucose transporter), member 11	1.996774	0.0	
chr3	3070029	3070158	reg1013732.p1	4.111	+	NM_001206956 NM_175613 AK057278 AK314396 BC026119	-136184	+	AK095729 TSC_hg19_v1_chr3_+_2553286	-516813	+	NM_001206955	-789581	+	AK304256 NM_000564 NM_001243099 NM_175724 NM_175725 NM_175726 NM_175727 NM_175728	81964	-	NM_182916 TSC_hg19_v1_chr3_+_3168634 AK290411 BC005184 AL834397 BC012537 AB063105 AF151805 AK124137	98558	+	TSC_hg19_v1_chr3_-_3221376 AF117230 CU675978 CU688352 AK058191 BC059171 CR627060 AK027507 AK312577 BC017419 BC067811	151279	-	NM_001206956|CNTN4|152330|contactin 4##NM_175613|CNTN4|152330|contactin 4##AK057278|CNTN4|152330|contactin 4##AK314396|CNTN4|152330|contactin 4##BC026119|CNTN4|152330|contactin 4##AK095729|CNTN4|152330|contactin 4##NM_001206955|CNTN4|152330|contactin 4##AK304256|IL5RA|3568|interleukin 5 receptor, alpha##NM_000564|IL5RA|3568|interleukin 5 receptor, alpha##NM_001243099|IL5RA|3568|interleukin 5 receptor, alpha##NM_175724|IL5RA|3568|interleukin 5 receptor, alpha##NM_175725|IL5RA|3568|interleukin 5 receptor, alpha##NM_175726|IL5RA|3568|interleukin 5 receptor, alpha##NM_175727|IL5RA|3568|interleukin 5 receptor, alpha##NM_175728|IL5RA|3568|interleukin 5 receptor, alpha##NM_182916|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##AK290411|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##BC005184|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##AL834397|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##BC012537|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##AB063105|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##AF151805|TRNT1|51095|tRNA nucleotidyl transferase, CCA-adding, 1##AF117230|CRBN|51185|cereblon##AK058191|CRBN|51185|cereblon##BC059171|CRBN|51185|cereblon##CR627060|CRBN|51185|cereblon##AK027507|CRBN|51185|cereblon##AK312577|CRBN|51185|cereblon##BC017419|CRBN|51185|cereblon##BC067811|CRBN|51185|cereblon	0.715034	0.0	denovo_WM_7:7:0.701
chr4	139599180	139599282	reg1013491.p1	4.111	+	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	-435867	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-1145589	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-1145639	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	337762	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	406172	-	TSC_hg19_v1_chr4_-_140005477 U43189 AK316455 DQ359746 BC065025 BC034951 NM_006874	406380	-	AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##U43189|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK316455|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ359746|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC065025|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##BC034951|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##NM_006874|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.0	0.0	
chr4	40318280	40318426	reg1005211.p1	4.111	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-119712	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-259821	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-338760	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	19092	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	198231	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	199605	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.525555	0.0	denovo_WM_7:17:0.526
chr6	33538755	33538889	reg1012678.p2	4.111	+	TSC_hg19_v1_chr6_+_33422352 AK313571 AK122644 NM_152735 BC014978	-116450	+	AK094225 NM_006772 AB067525 AK307888 AB385518	-150879	+	NM_001014433 NM_001014837 NM_001014838 NM_001014840 NM_015921 TSC_hg19_v1_chr6_-_33386080	-152742	-	U23765 U16811 TSC_hg19_v1_chr6_-_33547998 X84213 BC004431 BC032789 BC110337 AK091807 AK292093	9093	-	TSC_hg19_v1_chr6_-_33548037 AK303422 AK293547 NM_001188	9221	-	TSC_hg19_v1_chr6_+_33589123 D26351 NM_002224 BC146646 U01062	50372	+	AK313571|ZBTB9|221504|zinc finger and BTB domain containing 9##AK122644|ZBTB9|221504|zinc finger and BTB domain containing 9##NM_152735|ZBTB9|221504|zinc finger and BTB domain containing 9##BC014978|ZBTB9|221504|zinc finger and BTB domain containing 9##AK094225|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##NM_006772|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##AK307888|SYNGAP1|8831|synaptic Ras GTPase activating protein 1##NM_001014433|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014837|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014838|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_001014840|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##NM_015921|CUTA|51596|cutA divalent cation tolerance homolog (E. coli)##U23765|BAK1|578|BCL2-antagonist/killer 1##U16811|BAK1|578|BCL2-antagonist/killer 1##X84213|BAK1|578|BCL2-antagonist/killer 1##BC004431|BAK1|578|BCL2-antagonist/killer 1##BC032789|BAK1|578|BCL2-antagonist/killer 1##BC110337|BAK1|578|BCL2-antagonist/killer 1##AK091807|BAK1|578|BCL2-antagonist/killer 1##AK292093|BAK1|578|BCL2-antagonist/killer 1##AK303422|BAK1|578|BCL2-antagonist/killer 1##AK293547|BAK1|578|BCL2-antagonist/killer 1##NM_001188|BAK1|578|BCL2-antagonist/killer 1##D26351|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##NM_002224|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##BC146646|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3##U01062|ITPR3|3710|inositol 1,4,5-trisphosphate receptor, type 3	0.0	0.0	
chr11	64555145	64555307	reg1012591.p1	4.110	+	L49345 L49380 BC032676 BC020217 BC069273 TSC_hg19_v1_chr11_-_64546242 D26120 D26121 AK301803 BC034451 NM_004630 NM_201995 NM_201997 NM_201998	-8968	-	Y08766 TSC_hg19_v1_chr11_-_64546170	-9068	-	TSC_hg19_v1_chr11_-_64546015 BC008080 BC008724 AK296237 AK299705	-9221	-	CU690514 BC039839 AK298383 AK304495 BC047865 NM_004579	15440	-	TSC_hg19_v1_chr11_-_64578027 BC002544 AJ297485 AJ297486 NM_130800 NM_130801	22831	-	TSC_hg19_v1_chr11_-_64578206 NM_000244 NM_130799 U93236 AJ297487 NM_130802	22968	-	L49345|SF1|7536|splicing factor 1##L49380|SF1|7536|splicing factor 1##BC032676|SF1|7536|splicing factor 1##BC020217|SF1|7536|splicing factor 1##BC069273|SF1|7536|splicing factor 1##D26120|SF1|7536|splicing factor 1##D26121|SF1|7536|splicing factor 1##AK301803|SF1|7536|splicing factor 1##BC034451|SF1|7536|splicing factor 1##NM_004630|SF1|7536|splicing factor 1##NM_201995|SF1|7536|splicing factor 1##NM_201997|SF1|7536|splicing factor 1##NM_201998|SF1|7536|splicing factor 1##Y08766|SF1|7536|splicing factor 1##BC008080|SF1|7536|splicing factor 1##BC008724|SF1|7536|splicing factor 1##AK296237|SF1|7536|splicing factor 1##AK299705|SF1|7536|splicing factor 1##BC039839|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##AK298383|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##AK304495|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##BC047865|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##NM_004579|MAP4K2|5871|mitogen-activated protein kinase kinase kinase kinase 2##BC002544|MEN1|4221|multiple endocrine neoplasia I##AJ297485|MEN1|4221|multiple endocrine neoplasia I##AJ297486|MEN1|4221|multiple endocrine neoplasia I##NM_130800|MEN1|4221|multiple endocrine neoplasia I##NM_130801|MEN1|4221|multiple endocrine neoplasia I##NM_000244|MEN1|4221|multiple endocrine neoplasia I##NM_130799|MEN1|4221|multiple endocrine neoplasia I##U93236|MEN1|4221|multiple endocrine neoplasia I##AJ297487|MEN1|4221|multiple endocrine neoplasia I##NM_130802|MEN1|4221|multiple endocrine neoplasia I	0.0	0.735385	CTCF.p2:2:0.735
chr11	65030606	65030716	reg1014405.p1	4.110	+	TSC_hg19_v1_chr11_+_65029432 AK309284 BC001347 BC002990 BC018813 BC018814 NM_002689 AK297842 AK307831 AK025315	-1255	+	AK131327 NM_001004326 BC146850	-49347	+	TSC_hg19_v1_chr11_+_64949413 BC017200	-81222	+	NM_006779 TSC_hg19_v1_chr11_+_65082336 AF001436 AF163840 AK315444 BC075834	51676	+	NM_006268 TSC_hg19_v1_chr11_+_65101322 AK313408 AK300061 BX641135	70623	+	TSC_hg19_v1_chr11_+_65101347 BC014889 AK291944 U94585 AB463002 BT006718 DQ892397 DQ895612	70690	+	AK309284|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##BC001347|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##BC002990|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##BC018813|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##BC018814|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##NM_002689|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##AK297842|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##AK307831|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##AK025315|POLA2|23649|polymerase (DNA directed), alpha 2 (70kD subunit)##AK131327|SLC22A20|440044|solute carrier family 22, member 20##NM_001004326|SLC22A20|440044|solute carrier family 22, member 20##BC146850|SLC22A20|440044|solute carrier family 22, member 20##BC017200|CAPN1|823|calpain 1, (mu/I) large subunit##NM_006779|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##AF001436|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##AF163840|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##AK315444|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##BC075834|CDC42EP2|10435|CDC42 effector protein (Rho GTPase binding) 2##NM_006268|DPF2|5977|D4, zinc and double PHD fingers family 2##AK313408|DPF2|5977|D4, zinc and double PHD fingers family 2##AK300061|DPF2|5977|D4, zinc and double PHD fingers family 2##BX641135|DPF2|5977|D4, zinc and double PHD fingers family 2##BC014889|DPF2|5977|D4, zinc and double PHD fingers family 2##AK291944|DPF2|5977|D4, zinc and double PHD fingers family 2##U94585|DPF2|5977|D4, zinc and double PHD fingers family 2##BT006718|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ892397|DPF2|5977|D4, zinc and double PHD fingers family 2##DQ895612|DPF2|5977|D4, zinc and double PHD fingers family 2	0.994572	0.0	
chr17	74178496	74178603	reg1011697.p2	4.110	+	BC046460 NM_001454	-41175	-	TSC_hg19_v1_chr17_-_74099869 BX647763 NM_001013839 NM_001145297 NM_001145298 NM_001145299 NM_015219	-78684	-	AK295871 TSC_hg19_v1_chr17_-_74099825 FJ457119 FJ457120 AK023832 BC018466 AB028990 BC011045 AK128278 BC029432 AK022397 AL834324	-78825	-	AK091467 AX747002 AB067504 NM_052916 TSC_hg19_v1_chr17_-_74236615	57899	-	TSC_hg19_v1_chr17_+_74261282 BC060859 NM_182565	82735	+	TSC_hg19_v1_chr17_+_74261431 BC035511 EU176314	82958	+	BC046460|FOXJ1|2302|forkhead box J1##NM_001454|FOXJ1|2302|forkhead box J1##BX647763|EXOC7|23265|exocyst complex component 7##NM_001013839|EXOC7|23265|exocyst complex component 7##NM_001145297|EXOC7|23265|exocyst complex component 7##NM_001145298|EXOC7|23265|exocyst complex component 7##NM_001145299|EXOC7|23265|exocyst complex component 7##NM_015219|EXOC7|23265|exocyst complex component 7##AK295871|EXOC7|23265|exocyst complex component 7##FJ457119|EXOC7|23265|exocyst complex component 7##FJ457120|EXOC7|23265|exocyst complex component 7##AK023832|EXOC7|23265|exocyst complex component 7##BC018466|EXOC7|23265|exocyst complex component 7##AB028990|EXOC7|23265|exocyst complex component 7##BC011045|EXOC7|23265|exocyst complex component 7##AK128278|EXOC7|23265|exocyst complex component 7##BC029432|EXOC7|23265|exocyst complex component 7##AK022397|EXOC7|23265|exocyst complex component 7##AL834324|EXOC7|23265|exocyst complex component 7##AK091467|RNF157|114804|ring finger protein 157##AB067504|RNF157|114804|ring finger protein 157##NM_052916|RNF157|114804|ring finger protein 157##BC060859|FAM100B|283991|family with sequence similarity 100, member B##NM_182565|FAM100B|283991|family with sequence similarity 100, member B##BC035511|FAM100B|283991|family with sequence similarity 100, member B##EU176314|FAM100B|283991|family with sequence similarity 100, member B	0.0604	0.0	
chr17	44345073	44345243	reg1014279.p2	4.109	+	AK291259 NM_001193465	-42431	-	TSC_hg19_v1_chr17_-_44270338 BC098376 NM_015443	-74849	-	TSC_hg19_v1_chr17_-_44270149 BX538006 NM_001193466	-75004	-	BC040501 CR749232 NM_014834	27338	+	BC020869 AK289590 AK315857 BC041803 BC030570 BX647266 NM_001039083 NM_001103154 NM_001113738 NM_016632	93964	-	BC040501 CR749232 NM_001006607	244917	+	AK291259|KIAA1267|284058|KIAA1267##NM_001193465|KIAA1267|284058|KIAA1267##BC098376|KIAA1267|284058|KIAA1267##NM_015443|KIAA1267|284058|KIAA1267##BX538006|KIAA1267|284058|KIAA1267##NM_001193466|KIAA1267|284058|KIAA1267##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_014834|LRRC37A|9884|leucine rich repeat containing 37A##BC020869|ARL17A|51326|ADP-ribosylation factor-like 17A##AK289590|ARL17A|51326|ADP-ribosylation factor-like 17A##AK315857|ARL17A|51326|ADP-ribosylation factor-like 17A##BC041803|ARL17A|51326|ADP-ribosylation factor-like 17A##BC030570|ARL17A|51326|ADP-ribosylation factor-like 17A##BX647266|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_001039083|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001103154|ARL17B|100506084|ADP-ribosylation factor-like 17B##NM_001113738|ARL17A|51326|ADP-ribosylation factor-like 17A##NM_016632|ARL17A|51326|ADP-ribosylation factor-like 17A##BC040501|LRRC37A|9884|leucine rich repeat containing 37A##CR749232|LRRC37A|9884|leucine rich repeat containing 37A##NM_001006607|LRRC37A2|474170|leucine rich repeat containing 37, member A2	0.039693	0.0	
chr2	25502385	25502565	reg1012271.p2	4.109	+	TSC_hg19_v1_chr2_-_25475127 AF480163 NM_153759	-27269	-	TSC_hg19_v1_chr2_-_25468920 AK025230	-33497	-	TSC_hg19_v1_chr2_-_25467080 BC023612	-35340	-	TSC_hg19_v1_chr2_-_25536762 AB527956 EU446951	34332	-	AF067972 TSC_hg19_v1_chr2_-_25564801 BC043617 NM_022552	62324	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	62853	-	AF480163|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_153759|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##EU446951|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF067972|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC043617|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_022552|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.993238	0.0	denovo_WM_7:81:0.898
chr3	141131084	141131226	reg1014077.p1	4.109	+	AK311479 TSC_hg19_v1_chr3_+_141105293	-25867	+	TSC_hg19_v1_chr3_+_141087345 AK311501	-43798	+	BC015444 NM_001080412 TSC_hg19_v1_chr3_+_141043057	-88099	+	TSC_hg19_v1_chr3_+_141205882 AK292016 AK301015 AF115573 D78155 D82880 NM_006506	74716	+	TSC_hg19_v1_chr3_+_141457045 NM_001201370 NM_014245 NM_183237	325914	+	TSC_hg19_v1_chr3_+_141457129 AK311982	325965	+	AK311501|ZBTB38|253461|zinc finger and BTB domain containing 38##BC015444|ZBTB38|253461|zinc finger and BTB domain containing 38##NM_001080412|ZBTB38|253461|zinc finger and BTB domain containing 38##AK292016|RASA2|5922|RAS p21 protein activator 2##AK301015|RASA2|5922|RAS p21 protein activator 2##AF115573|RASA2|5922|RAS p21 protein activator 2##D78155|RASA2|5922|RAS p21 protein activator 2##D82880|RASA2|5922|RAS p21 protein activator 2##NM_006506|RASA2|5922|RAS p21 protein activator 2##NM_001201370|RNF7|9616|ring finger protein 7##NM_014245|RNF7|9616|ring finger protein 7##NM_183237|RNF7|9616|ring finger protein 7##AK311982|RNF7|9616|ring finger protein 7	0.112385	0.0	
chr5	79872339	79872453	reg1013069.p1	4.109	+	NM_001004441	-6093	-	BC137441 BC137442 CR749535 TSC_hg19_v1_chr5_-_79866099	-6304	-	TSC_hg19_v1_chr5_+_79796130 AB055763	-76267	+	TSC_hg19_v1_chr5_-_79946866 NM_001190470	74451	-	NM_002439	77897	+	CU674082 EU145592 V00507 AB590112 DQ892816 DQ896062 J00140 TSC_hg19_v1_chr5_-_79950336 AK312642 BC070280	77930	-	NM_001004441|ANKRD34B|340120|ankyrin repeat domain 34B##BC137441|ANKRD34B|340120|ankyrin repeat domain 34B##BC137442|ANKRD34B|340120|ankyrin repeat domain 34B##CR749535|ANKRD34B|340120|ankyrin repeat domain 34B##NM_001190470|MTRNR2L2|100462981|MT-RNR2-like 2##NM_002439|MSH3|4437|mutS homolog 3 (E. coli)##EU145592|DHFR|1719|dihydrofolate reductase##V00507|DHFR|1719|dihydrofolate reductase##DQ892816|DHFR|1719|dihydrofolate reductase##DQ896062|DHFR|1719|dihydrofolate reductase##J00140|DHFR|1719|dihydrofolate reductase##AK312642|DHFR|1719|dihydrofolate reductase##BC070280|DHFR|1719|dihydrofolate reductase	1.019703	0.0	denovo_WM_7:-46:0.331	denovo_WM_7:-47:0.331	denovo_WM_7:-48:0.331
chr7	69272692	69272772	reg1003051.p1	4.109	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-208144	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-208403	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-208896	+	TSC_hg19_v1_chr7_+_70231164 AK296981	958473	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1325056	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2529046	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.0	0.0	
chr10	35438470	35438599	reg1008165.p1	4.108	+	NM_183011 NM_183012 AB590551	-11798	+	NM_181571 NM_183060 BC041810	-22149	+	D14825 TSC_hg19_v1_chr10_+_35416154	-22399	+	AF417234 NM_182771 NM_182772	17920	+	NM_182769 NM_182770 AF417233 AY292864 BC090051 AK301906	25997	+	D14826 NM_182717 NM_182718 NM_182719 NM_182720 AK290612 AF069065 U44836	45551	+	NM_183011|CREM|1390|cAMP responsive element modulator##NM_183012|CREM|1390|cAMP responsive element modulator##NM_181571|CREM|1390|cAMP responsive element modulator##NM_183060|CREM|1390|cAMP responsive element modulator##BC041810|CREM|1390|cAMP responsive element modulator##D14825|CREM|1390|cAMP responsive element modulator##AF417234|CREM|1390|cAMP responsive element modulator##NM_182771|CREM|1390|cAMP responsive element modulator##NM_182772|CREM|1390|cAMP responsive element modulator##NM_182769|CREM|1390|cAMP responsive element modulator##NM_182770|CREM|1390|cAMP responsive element modulator##AF417233|CREM|1390|cAMP responsive element modulator##AY292864|CREM|1390|cAMP responsive element modulator##BC090051|CREM|1390|cAMP responsive element modulator##AK301906|CREM|1390|cAMP responsive element modulator##D14826|CREM|1390|cAMP responsive element modulator##NM_182717|CREM|1390|cAMP responsive element modulator##NM_182718|CREM|1390|cAMP responsive element modulator##NM_182719|CREM|1390|cAMP responsive element modulator##NM_182720|CREM|1390|cAMP responsive element modulator##AK290612|CREM|1390|cAMP responsive element modulator##AF069065|CREM|1390|cAMP responsive element modulator##U44836|CREM|1390|cAMP responsive element modulator	0.0	0.0	
chr17	2392810	2392925	reg1007014.p1	4.108	+	X96401 NM_020310 TSC_hg19_v1_chr17_-_2304355 AK291596	-88551	-	TSC_hg19_v1_chr17_+_2240796 NM_014853 AB007857 NM_001098509 BC039204 AK294955 AB275762 AB385325 AB449878 AK304263	-151965	+	NM_018128 AB037822	-152129	-	TSC_hg19_v1_chr17_-_2415189 BX647255 AK294547 BC050603 BC001213 AL832612 AK027410 AK296464 NM_024086	22278	-	TSC_hg19_v1_chr17_+_2496944 NM_000430 L13386	104103	+	TSC_hg19_v1_chr17_+_2497263 BX538346 AK313078 L13385 BC064638	104391	+	X96401|MNT|4335|MAX binding protein##NM_020310|MNT|4335|MAX binding protein##AK291596|MNT|4335|MAX binding protein##NM_014853|SGSM2|9905|small G protein signaling modulator 2##AB007857|SGSM2|9905|small G protein signaling modulator 2##NM_001098509|SGSM2|9905|small G protein signaling modulator 2##BC039204|SGSM2|9905|small G protein signaling modulator 2##AK294955|SGSM2|9905|small G protein signaling modulator 2##AB275762|SGSM2|9905|small G protein signaling modulator 2##AB449878|SGSM2|9905|small G protein signaling modulator 2##AK304263|SGSM2|9905|small G protein signaling modulator 2##NM_018128|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##AB037822|TSR1|55720|TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)##BX647255|METTL16|79066|methyltransferase like 16##AK294547|METTL16|79066|methyltransferase like 16##BC050603|METTL16|79066|methyltransferase like 16##BC001213|METTL16|79066|methyltransferase like 16##AL832612|METTL16|79066|methyltransferase like 16##AK027410|METTL16|79066|methyltransferase like 16##AK296464|METTL16|79066|methyltransferase like 16##NM_024086|METTL16|79066|methyltransferase like 16##NM_000430|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13386|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BX538346|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##AK313078|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##L13385|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)##BC064638|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.0	0.0	
chr20	19745505	19745596	reg1012995.p2	4.108	+	TSC_hg19_v1_chr20_+_19193372 AB587438 AF169257	-552097	+	TSC_hg19_v1_chr20_+_19193285 AF288087 NM_020689	-552265	+	NM_001242671	-934712	-	TSC_hg19_v1_chr20_+_19867169 AK094884 NM_001242581	121593	+	BC128065 NM_018993 TSC_hg19_v1_chr20_+_19870217 AB060339	124677	+	TSC_hg19_v1_chr20_+_19915762 BC034698 AL136924	170199	+	AF169257|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##AF288087|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##NM_020689|SLC24A3|57419|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3##NM_001242671|LOC100128496|100128496|uncharacterized LOC100128496##AK094884|RIN2|54453|Ras and Rab interactor 2##NM_001242581|RIN2|54453|Ras and Rab interactor 2##BC128065|RIN2|54453|Ras and Rab interactor 2##NM_018993|RIN2|54453|Ras and Rab interactor 2##AB060339|RIN2|54453|Ras and Rab interactor 2##BC034698|RIN2|54453|Ras and Rab interactor 2##AL136924|RIN2|54453|Ras and Rab interactor 2	0.998352	0.0	
chr2	30511206	30511386	reg1001354.p2	4.108	+	AL136703 BC109376 NM_030915 TSC_hg19_v1_chr2_+_30454402 AK314598 EF025586 BC126434 BC130415 AK223541 AM393065 AM393281 HQ258723 AK027232	-56794	+	TSC_hg19_v1_chr2_+_30369872 AK307099 AK025730 AK311404 BC000836	-141420	+	TSC_hg19_v1_chr2_+_30369836 AF151885 AF172940 AF135161	-141463	+	TSC_hg19_v1_chr2_+_30670138 BC146817 AK296965 AK095284 AK297262 AY358702 NM_182551 BX647953 NM_001002257 AK302562 AK311294	158852	+	BC117345 BC117347 TSC_hg19_v1_chr2_-_31030296 AK308037 AK074418 BX640793 NM_144575 AK290298	518997	-	AK122747 NM_001253827	841201	-	AL136703|LBH|81606|limb bud and heart development homolog (mouse)##BC109376|LBH|81606|limb bud and heart development homolog (mouse)##NM_030915|LBH|81606|limb bud and heart development homolog (mouse)##AK314598|LBH|81606|limb bud and heart development homolog (mouse)##EF025586|LBH|81606|limb bud and heart development homolog (mouse)##BC126434|LBH|81606|limb bud and heart development homolog (mouse)##BC130415|LBH|81606|limb bud and heart development homolog (mouse)##AK223541|LBH|81606|limb bud and heart development homolog (mouse)##AM393065|LBH|81606|limb bud and heart development homolog (mouse)##AM393281|LBH|81606|limb bud and heart development homolog (mouse)##HQ258723|LBH|81606|limb bud and heart development homolog (mouse)##AK027232|LBH|81606|limb bud and heart development homolog (mouse)##AK307099|YPEL5|51646|yippee-like 5 (Drosophila)##AK025730|YPEL5|51646|yippee-like 5 (Drosophila)##BC000836|YPEL5|51646|yippee-like 5 (Drosophila)##AF151885|YPEL5|51646|yippee-like 5 (Drosophila)##AF172940|YPEL5|51646|yippee-like 5 (Drosophila)##AF135161|YPEL5|51646|yippee-like 5 (Drosophila)##BC146817|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK296965|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK095284|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK297262|LCLAT1|253558|lysocardiolipin acyltransferase 1##AY358702|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_182551|LCLAT1|253558|lysocardiolipin acyltransferase 1##BX647953|LCLAT1|253558|lysocardiolipin acyltransferase 1##NM_001002257|LCLAT1|253558|lysocardiolipin acyltransferase 1##AK302562|LCLAT1|253558|lysocardiolipin acyltransferase 1##BC117345|CAPN13|92291|calpain 13##BC117347|CAPN13|92291|calpain 13##AK308037|CAPN13|92291|calpain 13##AK074418|CAPN13|92291|calpain 13##BX640793|CAPN13|92291|calpain 13##NM_144575|CAPN13|92291|calpain 13##AK290298|CAPN13|92291|calpain 13##AK122747|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253827|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)	0.0	0.0	
chr4	48195707	48195804	reg1014331.p1	4.108	+	BC017829 L27071 NM_003328	-59497	-	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-176952	+	X64802 TSC_hg19_v1_chr4_-_48018662	-177118	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	76080	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	147656	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	147858	+	BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2	0.0	0.0	
chrY	1173862	1173960	reg1009994.p1	4.108	+	NM_000451 NM_006883 U89331	-638833	+	AK293506 NM_013239	-876222	-	NM_018390 BC064136 BC005028 BC000888 BC032072	-1025804	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	107673	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	163803	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	177672	+	NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	0.99566	0.0	denovo_WM_7:48:0.456	denovo_WM_7:49:0.456
chr2	228720391	228720499	reg1012812.p1	4.107	+	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	-41854	+	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	-137724	-	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	-222527	-	AK097409 NM_178821 BC036377 AK098821 AK301861	15907	+	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	325917	-	AB075874 AK125359 TSC_hg19_v1_chr2_-_230135980 BC040164 AK096636 NM_001100818 NM_017933	1415560	-	BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20##AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AB075874|PID1|55022|phosphotyrosine interaction domain containing 1##AK125359|PID1|55022|phosphotyrosine interaction domain containing 1##BC040164|PID1|55022|phosphotyrosine interaction domain containing 1##AK096636|PID1|55022|phosphotyrosine interaction domain containing 1##NM_001100818|PID1|55022|phosphotyrosine interaction domain containing 1##NM_017933|PID1|55022|phosphotyrosine interaction domain containing 1	0.057232	0.0	
chr8	128580441	128580572	reg1013457.p1	4.107	+	DQ486513 NM_001159542	-152650	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-1009782	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-1009951	-	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	167819	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	167984	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	226277	+	DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)	0.997063	0.0	denovo_WM_7:19:0.256	denovo_WM_7:22:0.512
chr14	55627852	55627936	reg1010651.p1	4.106	+	TSC_hg19_v1_chr14_+_55595969 AB006780 BC053667 BC068068 M36682 BC001120 M35368 M57710	-31909	+	TSC_hg19_v1_chr14_+_55595963 NM_001177388 NM_002306 AK314929	-31946	+	AK025580 TSC_hg19_v1_chr14_+_55518408 BC015621	-109463	+	TSC_hg19_v1_chr14_-_55650349 BT007344	22512	-	TSC_hg19_v1_chr14_-_55658298 BX248255 D13633 AK291847 AK299338 BC010658 AK297480 AB076695 NM_001146015 NM_014750	30406	-	NM_017943 AK092879 AX747787 TSC_hg19_v1_chr14_+_55738097 BC109120 BC109121	110165	+	AB006780|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC053667|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC068068|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M36682|LGALS3|3958|lectin, galactoside-binding, soluble, 3##BC001120|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M35368|LGALS3|3958|lectin, galactoside-binding, soluble, 3##M57710|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_001177388|LGALS3|3958|lectin, galactoside-binding, soluble, 3##NM_002306|LGALS3|3958|lectin, galactoside-binding, soluble, 3##AK314929|LGALS3|3958|lectin, galactoside-binding, soluble, 3##AK025580|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##BC015621|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##BT007344|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BX248255|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##D13633|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK291847|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK299338|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##BC010658|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AK297480|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##AB076695|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_001146015|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_014750|DLGAP5|9787|discs, large (Drosophila) homolog-associated protein 5##NM_017943|FBXO34|55030|F-box protein 34##AK092879|FBXO34|55030|F-box protein 34##BC109120|FBXO34|55030|F-box protein 34##BC109121|FBXO34|55030|F-box protein 34	0.0	0.0	
chr14	72649507	72649687	reg1011771.p2	4.106	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-249731	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-250444	+	AK294895 NM_001204423	-250781	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	711211	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	743538	+	AK098542 AF311602 NM_178441	804060	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.0	0.0	
chr15	50682859	50682994	reg1014438.p1	4.106	+	TSC_hg19_v1_chr15_+_50647681 BX537481	-35255	+	NM_002041 NM_005254 NM_016654 NM_016655 NM_181427	-35322	-	D13317 TSC_hg19_v1_chr15_-_50647396 AK301350 BC036080	-35534	-	TSC_hg19_v1_chr15_+_50716601 AK292400 BX537420 NM_001128610 NM_001128611 NM_005154 AK296480 BC038801 D29956 BC015545 BC110590 BC092443 BC026954 BC051345	33695	+	NM_203494	155975	-	TSC_hg19_v1_chr15_-_50978746 BC128987 BC128988	295840	-	BX537481|LOC100129387|100129387|uncharacterized LOC100129387##NM_002041|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_005254|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016654|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_016655|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##NM_181427|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##D13317|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK301350|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##BC036080|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK292400|USP8|9101|ubiquitin specific peptidase 8##BX537420|USP8|9101|ubiquitin specific peptidase 8##NM_001128610|USP8|9101|ubiquitin specific peptidase 8##NM_001128611|USP8|9101|ubiquitin specific peptidase 8##NM_005154|USP8|9101|ubiquitin specific peptidase 8##AK296480|USP8|9101|ubiquitin specific peptidase 8##BC038801|USP8|9101|ubiquitin specific peptidase 8##D29956|USP8|9101|ubiquitin specific peptidase 8##BC015545|USP8|9101|ubiquitin specific peptidase 8##BC110590|USP8|9101|ubiquitin specific peptidase 8##BC092443|USP8|9101|ubiquitin specific peptidase 8##BC026954|USP8|9101|ubiquitin specific peptidase 8##BC051345|USP8|9101|ubiquitin specific peptidase 8##NM_203494|USP50|373509|ubiquitin specific peptidase 50##BC128987|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##BC128988|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7	0.0	0.0	
chr2	86080998	86081178	reg1007856.p1	4.106	+	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	-100083	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-159608	+	NM_000542 NM_198843	-185225	-	AY152815 NM_001042437	13704	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	34998	-	BC117173 BC126303 BC143345 BC073968 U33460 TSC_hg19_v1_chr2_-_86333002 AK307490 AK302458	251895	-	NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC117173|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC126303|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC143345|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##BC073968|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##U33460|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK307490|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa##AK302458|POLR1A|25885|polymerase (RNA) I polypeptide A, 194kDa	0.0	0.0	
chr3	23994710	23994796	reg1005940.p2	4.106	+	TSC_hg19_v1_chr3_+_23987516 AK301925 NM_001145425	-7191	+	TSC_hg19_v1_chr3_+_23986776 NM_005126 D16815 AK313464 BC045613 BC070035	-7938	+	NM_001253380 AY347528 L25899 AB529129 BT019672 CU677095 CU687134	-35481	+	GQ456948 GQ456949 GQ869479 GQ919288 AY286469 AY286468 AY286465 AY286471 TSC_hg19_v1_chr3_-_24536294 AY286467 AY286466 AK096628 M26747 NM_000461 NM_001128176 NM_001128177 NM_001252634 X04707	541491	-	AY286470 TSC_hg19_v1_chr3_-_24536493	541724	-	TSC_hg19_v1_chr3_+_25469751 AF157483 NM_016152	1475006	+	AK301925|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001145425|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_005126|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##D16815|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##AK313464|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC045613|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC070035|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##NM_001253380|RPL15|6138|ribosomal protein L15##AY347528|RPL15|6138|ribosomal protein L15##L25899|RPL15|6138|ribosomal protein L15##BT019672|RPL15|6138|ribosomal protein L15##GQ456948|THRB|7068|thyroid hormone receptor, beta##GQ456949|THRB|7068|thyroid hormone receptor, beta##GQ869479|THRB|7068|thyroid hormone receptor, beta##GQ919288|THRB|7068|thyroid hormone receptor, beta##AY286469|THRB|7068|thyroid hormone receptor, beta##AY286468|THRB|7068|thyroid hormone receptor, beta##AY286465|THRB|7068|thyroid hormone receptor, beta##AY286471|THRB|7068|thyroid hormone receptor, beta##AY286467|THRB|7068|thyroid hormone receptor, beta##AY286466|THRB|7068|thyroid hormone receptor, beta##AK096628|THRB|7068|thyroid hormone receptor, beta##M26747|THRB|7068|thyroid hormone receptor, beta##NM_000461|THRB|7068|thyroid hormone receptor, beta##NM_001128176|THRB|7068|thyroid hormone receptor, beta##NM_001128177|THRB|7068|thyroid hormone receptor, beta##NM_001252634|THRB|7068|thyroid hormone receptor, beta##X04707|THRB|7068|thyroid hormone receptor, beta##AY286470|THRB|7068|thyroid hormone receptor, beta##AF157483|RARB|5915|retinoic acid receptor, beta##NM_016152|RARB|5915|retinoic acid receptor, beta	2.933656	0.0	denovo_WM_7:-79:0.502	denovo_WM_7:88:0.854	denovo_WM_7:103:0.841
chr6	150001803	150001914	reg1011480.p1	4.106	+	TSC_hg19_v1_chr6_-_149969879 NM_001204076 NM_007044	-31960	-	AK292090 TSC_hg19_v1_chr6_-_149969851	-32008	-	TSC_hg19_v1_chr6_-_149969770 BC050428	-32087	-	BC015665 TSC_hg19_v1_chr6_-_150039204	37324	-	TSC_hg19_v1_chr6_-_150039235 BC002767	37371	-	AF104413 NM_004690	37533	-	NM_001204076|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##NM_007044|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##AK292090|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##BC050428|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##BC015665|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)##BC002767|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)##AF104413|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)##NM_004690|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)	0.997938	0.0	denovo_WM_7:29:0.306	denovo_WM_7:30:0.306	denovo_WM_7:31:0.306
chr11	1212842	1212980	reg1010176.p1	4.105	+	TSC_hg19_v1_chr11_+_1151579 AF015521 AJ298317 AF043909	-61325	+	TSC_hg19_v1_chr11_+_1074873 L21998 NM_002457	-138039	+	AY458429 AY312160 NM_005961 TSC_hg19_v1_chr11_-_1036715	-176225	-	TSC_hg19_v1_chr11_+_1213469 Z48314	563	+	TSC_hg19_v1_chr11_+_1244295 NM_002458 AK310939	31385	+	TSC_hg19_v1_chr11_+_1244340 AF086604	31425	+	AF015521|MUC5AC|4586|mucin 5AC, oligomeric mucus/gel-forming##AJ298317|MUC5AC|4586|mucin 5AC, oligomeric mucus/gel-forming##AF043909|MUC5AC|4586|mucin 5AC, oligomeric mucus/gel-forming##L21998|MUC2|4583|mucin 2, oligomeric mucus/gel-forming##NM_002457|MUC2|4583|mucin 2, oligomeric mucus/gel-forming##AY458429|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##AY312160|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##NM_005961|MUC6|4588|mucin 6, oligomeric mucus/gel-forming##Z48314|MUC5AC|4586|mucin 5AC, oligomeric mucus/gel-forming##NM_002458|MUC5B|727897|mucin 5B, oligomeric mucus/gel-forming##AK310939|MUC5B|727897|mucin 5B, oligomeric mucus/gel-forming##AF086604|MUC5B|727897|mucin 5B, oligomeric mucus/gel-forming	0.0	0.0	
chr11	63620137	63620244	reg1011705.p1	4.105	+	TSC_hg19_v1_chr11_+_63606599 AK307858	-13586	+	TSC_hg19_v1_chr11_+_63606564 AK225766	-13641	+	TSC_hg19_v1_chr11_+_63606486 AB188493 NM_001039469 NM_001163296 NM_001163297 NM_004954	-13764	+	NM_017490 AK290339 TSC_hg19_v1_chr11_+_63656059 X97630 AY562188	35886	+	BC023587 NM_173587	64125	-	TSC_hg19_v1_chr11_-_63684632 AB593132	64449	-	AK307858|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK225766|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AB188493|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001039469|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163296|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163297|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_004954|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_017490|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK290339|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##X97630|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AY562188|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##AB593132|RCOR2|283248|REST corepressor 2	0.99677	0.0	denovo_WM_7:-36:0.692
chr12	46961617	46961751	reg1009215.p2	4.105	+	TSC_hg19_v1_chr12_-_46766619 NM_018976	-195081	-	TSC_hg19_v1_chr12_-_46766555 AK291644 BC040342 AK001700 AJ344099 AF298897	-195395	-	NM_001077484 NM_030674	-298477	-	AF305814 AF193836 AK001053 AK291168 NM_001143824 NM_018018	258072	-	TSC_hg19_v1_chr12_+_47473404 BC072670	511713	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	511899	-	NM_018976|SLC38A2|54407|solute carrier family 38, member 2##AK291644|SLC38A2|54407|solute carrier family 38, member 2##BC040342|SLC38A2|54407|solute carrier family 38, member 2##AK001700|SLC38A2|54407|solute carrier family 38, member 2##AJ344099|SLC38A2|54407|solute carrier family 38, member 2##AF298897|SLC38A2|54407|solute carrier family 38, member 2##NM_001077484|SLC38A1|81539|solute carrier family 38, member 1##NM_030674|SLC38A1|81539|solute carrier family 38, member 1##AF305814|SLC38A4|55089|solute carrier family 38, member 4##AF193836|SLC38A4|55089|solute carrier family 38, member 4##AK001053|SLC38A4|55089|solute carrier family 38, member 4##AK291168|SLC38A4|55089|solute carrier family 38, member 4##NM_001143824|SLC38A4|55089|solute carrier family 38, member 4##NM_018018|SLC38A4|55089|solute carrier family 38, member 4##BC072670|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2	0.996959	0.0	
chr12	57051846	57052026	reg1010016.p1	4.105	+	TSC_hg19_v1_chr12_-_57039785 NM_001686	-12110	-	TSC_hg19_v1_chr12_-_57039769 CU677643 DQ891585 DQ894779 BC010111 AB489161 BC016512 AK291085	-12181	-	TSC_hg19_v1_chr12_-_57030136 AK303327 CR749379 NM_013449	-21810	-	AK098214 TSC_hg19_v1_chr12_-_57081913 BC003005	29914	-	TSC_hg19_v1_chr12_-_57081947 AK291945 AK295208	30004	-	TSC_hg19_v1_chr12_-_57082040 AK298160 L24804 Z69891	30065	-	NM_001686|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ891585|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##DQ894779|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##BC016512|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK291085|ATP5B|506|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide##AK303327|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##CR749379|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##NM_013449|BAZ2A|11176|bromodomain adjacent to zinc finger domain, 2A##AK098214|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##BC003005|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK291945|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK295208|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##AK298160|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##L24804|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)##Z69891|PTGES3|10728|prostaglandin E synthase 3 (cytosolic)	0.997792	0.0	
chr14	70690363	70690465	reg1003275.p2	4.105	+	BC036783 BX248763 TSC_hg19_v1_chr14_-_70655669 AF510501 AF510502 AF510503 NM_033262 NM_058240 NM_182932 NM_183002	-34727	-	AK096553 AJ745101 AJ745102 BC114217 NM_182936 AK122728 BC142969 NM_001130417	-143522	-	NM_001034852 NM_022137 TSC_hg19_v1_chr14_+_70346132 AK289988 AK313063 AJ249900 BC011548 BC008608	-344285	+	CR457199 AB528661 CU674840 BC001702 TSC_hg19_v1_chr14_-_70826389	135932	-	AF151037 AK290743 TSC_hg19_v1_chr14_-_70826395 AX810696 FJ460510 FJ460511 NM_001204090 NM_016468	136006	-	AB527912 TSC_hg19_v1_chr14_-_70883770 BC007704 AK002133 AK311719 NM_001202547 NM_001202548 NM_001202549 NM_018373	193342	-	BC036783|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##BX248763|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AF510501|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AF510502|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AF510503|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_033262|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_058240|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_182932|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_183002|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AK096553|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AJ745101|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AJ745102|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##BC114217|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_182936|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##AK122728|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##BC142969|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_001130417|SLC8A3|6547|solute carrier family 8 (sodium/calcium exchanger), member 3##NM_001034852|SMOC1|64093|SPARC related modular calcium binding 1##NM_022137|SMOC1|64093|SPARC related modular calcium binding 1##AK289988|SMOC1|64093|SPARC related modular calcium binding 1##AK313063|SMOC1|64093|SPARC related modular calcium binding 1##AJ249900|SMOC1|64093|SPARC related modular calcium binding 1##BC011548|SMOC1|64093|SPARC related modular calcium binding 1##BC008608|SMOC1|64093|SPARC related modular calcium binding 1##CR457199|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC001702|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##AF151037|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK290743|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##FJ460510|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##FJ460511|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_001204090|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_016468|COX16|51241|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC007704|SYNJ2BP|55333|synaptojanin 2 binding protein##AK002133|SYNJ2BP|55333|synaptojanin 2 binding protein##AK311719|SYNJ2BP|55333|synaptojanin 2 binding protein##NM_001202547|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_001202548|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_001202549|SYNJ2BP-COX16|100529257|SYNJ2BP-COX16 readthrough##NM_018373|SYNJ2BP|55333|synaptojanin 2 binding protein	0.0	0.0	
chr14	95678282	95678391	reg1016526.p1	4.105	+	TSC_hg19_v1_chr14_+_95624023 BC040596	-54315	+	TSC_hg19_v1_chr14_-_95623867 BC046934 AB023145 BC150287 NM_177438	-54544	-	AY929254 AY929255 AY929256 TSC_hg19_v1_chr14_-_95623633	-54714	-	AL117526 TSC_hg19_v1_chr14_-_95786246 AK025226 BC068482 AB047979 AK314315 NM_024734	107847	-	AK131436 BC146604 BX248076 NM_152592	263768	-	TSC_hg19_v1_chr14_-_96000962 BC036576 AK097876	322679	-	BC040596|DICER1-AS|400242|DICER1 antisense RNA (non-protein coding)##BC046934|DICER1|23405|dicer 1, ribonuclease type III##AB023145|DICER1|23405|dicer 1, ribonuclease type III##BC150287|DICER1|23405|dicer 1, ribonuclease type III##NM_177438|DICER1|23405|dicer 1, ribonuclease type III##AY929254|DICER1|23405|dicer 1, ribonuclease type III##AY929255|DICER1|23405|dicer 1, ribonuclease type III##AY929256|DICER1|23405|dicer 1, ribonuclease type III##AL117526|CLMN|79789|calmin (calponin-like, transmembrane)##AK025226|CLMN|79789|calmin (calponin-like, transmembrane)##BC068482|CLMN|79789|calmin (calponin-like, transmembrane)##AB047979|CLMN|79789|calmin (calponin-like, transmembrane)##AK314315|CLMN|79789|calmin (calponin-like, transmembrane)##NM_024734|CLMN|79789|calmin (calponin-like, transmembrane)##AK131436|C14orf49|161176|chromosome 14 open reading frame 49##BC146604|C14orf49|161176|chromosome 14 open reading frame 49##BX248076|C14orf49|161176|chromosome 14 open reading frame 49##NM_152592|C14orf49|161176|chromosome 14 open reading frame 49##BC036576|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)##AK097876|SNHG10|283596|small nucleolar RNA host gene 10 (non-protein coding)	0.0	0.0	
chr1	66749270	66749419	reg1014470.p1	4.105	+	AB209081 NM_001037340 AK290006	-290941	+	AK289969 NM_002600 L20966	-490485	+	NM_001037341 CR749667 BC071607 BC036108	-491149	+	L12685 NM_001037339 M97515 L12686 TSC_hg19_v1_chr1_+_66797927	48509	+	TSC_hg19_v1_chr1_+_66798096 AK294441	48751	+	AK299941 AK298970 NM_032291 TSC_hg19_v1_chr1_+_66999843 AB210039 AL136561	250540	+	AB209081|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037340|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK290006|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK289969|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_002600|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##L20966|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037341|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##CR749667|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##BC071607|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##BC036108|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037339|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##M97515|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##L12686|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK294441|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK299941|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AK298970|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##NM_032291|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AB210039|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AL136561|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1	0.203213	0.0	
chr19	11695060	11695183	reg1000537.p2	4.105	+	BC111014 TSC_hg19_v1_chr19_-_11689776 AK307164 NM_001111035 NM_001111036	-5339	-	AK225912 NM_001111034	-5530	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	-6591	-	NM_145295 BC098416 AK095639 BC006279 AK074846 BC069232	13170	+	X51760 BC052597 AK308189 NM_001080493 AK300579 AK303213	154637	-	NM_152355 TSC_hg19_v1_chr19_+_11877884 AK095956	182739	+	BC111014|ACP5|54|acid phosphatase 5, tartrate resistant##AK307164|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111035|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111036|ACP5|54|acid phosphatase 5, tartrate resistant##AK225912|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001111034|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant##NM_145295|ZNF627|199692|zinc finger protein 627##BC098416|ZNF627|199692|zinc finger protein 627##AK095639|ZNF627|199692|zinc finger protein 627##BC006279|ZNF627|199692|zinc finger protein 627##AK074846|ZNF627|199692|zinc finger protein 627##BC069232|ZNF627|199692|zinc finger protein 627##X51760|ZNF823|55552|zinc finger protein 823##BC052597|ZNF823|55552|zinc finger protein 823##AK308189|ZNF823|55552|zinc finger protein 823##NM_001080493|ZNF823|55552|zinc finger protein 823##AK300579|ZNF823|55552|zinc finger protein 823##AK303213|ZNF823|55552|zinc finger protein 823##NM_152355|ZNF441|126068|zinc finger protein 441##AK095956|ZNF441|126068|zinc finger protein 441	0.0	0.0	
chr20	24975614	24975725	reg1013967.p2	4.105	+	TSC_hg19_v1_chr20_-_24973410 NM_020531 AK301959	-2182	-	TSC_hg19_v1_chr20_-_24973366 AB033767 AK291129	-2288	-	TSC_hg19_v1_chr20_-_24973355 CU678464 BC003501	-2339	-	AK125058 AK296306 NM_001252676	37655	-	AL832939 BC114612 AK314440 TSC_hg19_v1_chr20_-_25038780 BC044588 BC055008 AK127566 BC039261 NM_001252675 NM_001252677 NM_032501	63010	-	BC126228 BC136497 AF251033 AF251034 DQ854807 DQ854808 DQ854809 DQ854810 DQ854811 DQ854812 NM_014588 NM_199425	87092	-	NM_020531|C20orf3|57136|chromosome 20 open reading frame 3##AK301959|C20orf3|57136|chromosome 20 open reading frame 3##AB033767|C20orf3|57136|chromosome 20 open reading frame 3##AK291129|C20orf3|57136|chromosome 20 open reading frame 3##BC003501|C20orf3|57136|chromosome 20 open reading frame 3##AK125058|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK296306|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252676|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AL832939|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC114612|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK314440|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC044588|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC055008|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##AK127566|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC039261|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252675|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_001252677|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##NM_032501|ACSS1|84532|acyl-CoA synthetase short-chain family member 1##BC126228|VSX1|30813|visual system homeobox 1##BC136497|VSX1|30813|visual system homeobox 1##AF251033|VSX1|30813|visual system homeobox 1##AF251034|VSX1|30813|visual system homeobox 1##DQ854807|VSX1|30813|visual system homeobox 1##DQ854808|VSX1|30813|visual system homeobox 1##DQ854809|VSX1|30813|visual system homeobox 1##DQ854810|VSX1|30813|visual system homeobox 1##DQ854811|VSX1|30813|visual system homeobox 1##DQ854812|VSX1|30813|visual system homeobox 1##NM_014588|VSX1|30813|visual system homeobox 1##NM_199425|VSX1|30813|visual system homeobox 1	0.0	0.989122	CTCF.p2:-23:0.989
chr2	74115722	74115852	reg1010566.p2	4.105	+	BC007682 U73522 CU675757 CU688078 DQ892616 DQ895856 EU927390 TSC_hg19_v1_chr2_+_74058055	-57775	+	TSC_hg19_v1_chr2_+_74056109 NM_006463 NM_213622 BC065574	-59653	+	NM_201647 TSC_hg19_v1_chr2_+_74056093	-59719	+	NM_001199893 NM_001615 TSC_hg19_v1_chr2_+_74120106	4314	+	AK311286 TSC_hg19_v1_chr2_+_74120134 AK124338 AK304523 AK310215 AK311011 AK312955 BC012617 X16940	4350	+	TSC_hg19_v1_chr2_+_74153968 NM_080916 NM_080918	38163	+	BC007682|STAMBP|10617|STAM binding protein##U73522|STAMBP|10617|STAM binding protein##DQ892616|STAMBP|10617|STAM binding protein##DQ895856|STAMBP|10617|STAM binding protein##EU927390|STAMBP|10617|STAM binding protein##NM_006463|STAMBP|10617|STAM binding protein##NM_213622|STAMBP|10617|STAM binding protein##BC065574|STAMBP|10617|STAM binding protein##NM_201647|STAMBP|10617|STAM binding protein##NM_001199893|ACTG2|72|actin, gamma 2, smooth muscle, enteric##NM_001615|ACTG2|72|actin, gamma 2, smooth muscle, enteric##AK124338|ACTG2|72|actin, gamma 2, smooth muscle, enteric##AK304523|ACTG2|72|actin, gamma 2, smooth muscle, enteric##AK310215|ACTG2|72|actin, gamma 2, smooth muscle, enteric##AK312955|ACTG2|72|actin, gamma 2, smooth muscle, enteric##BC012617|ACTG2|72|actin, gamma 2, smooth muscle, enteric##X16940|ACTG2|72|actin, gamma 2, smooth muscle, enteric##NM_080916|DGUOK|1716|deoxyguanosine kinase##NM_080918|DGUOK|1716|deoxyguanosine kinase	1.756376	0.0	denovo_WM_7:-25:0.527	denovo_WM_7:-26:0.470	denovo_WM_7:-73:0.617
chr6	140590908	140591015	reg1011106.p1	4.105	+	NM_006079 TSC_hg19_v1_chr6_-_139695784	-895177	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	-895200	-	NM_001168389 NM_001168388	-895538	-	BC095542 GU727635 M73482 NM_002511	1818903	-	TSC_hg19_v1_chr6_+_142468399 AF151062 AK301376 BC006989 BC022536	1877429	+	TSC_hg19_v1_chr6_+_142468406 AL136684 AK130738 AF060225 AF271994 AK000051 NM_016485	1877445	+	NM_006079|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC095542|NMBR|4829|neuromedin B receptor##GU727635|NMBR|4829|neuromedin B receptor##M73482|NMBR|4829|neuromedin B receptor##NM_002511|NMBR|4829|neuromedin B receptor##AF151062|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK301376|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC006989|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##BC022536|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AL136684|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK130738|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF060225|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AF271994|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##AK000051|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##NM_016485|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)	0.992776	0.0	denovo_WM_7:-2:0.261	denovo_WM_7:-3:0.251	denovo_WM_7:-4:0.460
chr12	15113931	15114067	reg1005164.p1	4.104	+	CU688844 BC030218 AY358536 NM_152321 AK056677	-22538	-	BT006733 CR450358 DQ892495 DQ895707 X07362 AY542304 M58549 BC070314 X53331 BC005272 AK310040 AK312029 BC093078 TSC_hg19_v1_chr12_-_15038794 NM_000900 NM_001190839	-75211	-	AY829433 AY829434 NM_021071 AK291662 TSC_hg19_v1_chr12_-_14996461	-117575	-	TSC_hg19_v1_chr12_-_15114536 BC009200 X69549 L07916 AK311807 NM_001175 L20688	549	-	NM_006205 DQ980604 D45399	11967	+	AK311016 BC007997 AK295343 AK313881 NM_001190726 NM_032918	260351	-	BC030218|ERP27|121506|endoplasmic reticulum protein 27##AY358536|ERP27|121506|endoplasmic reticulum protein 27##NM_152321|ERP27|121506|endoplasmic reticulum protein 27##AK056677|ERP27|121506|endoplasmic reticulum protein 27##BT006733|MGP|4256|matrix Gla protein##CR450358|MGP|4256|matrix Gla protein##DQ892495|MGP|4256|matrix Gla protein##DQ895707|MGP|4256|matrix Gla protein##X07362|MGP|4256|matrix Gla protein##AY542304|MGP|4256|matrix Gla protein##M58549|MGP|4256|matrix Gla protein##BC070314|MGP|4256|matrix Gla protein##X53331|MGP|4256|matrix Gla protein##BC005272|MGP|4256|matrix Gla protein##AK312029|MGP|4256|matrix Gla protein##BC093078|MGP|4256|matrix Gla protein##NM_000900|MGP|4256|matrix Gla protein##NM_001190839|MGP|4256|matrix Gla protein##AY829433|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AY829434|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##NM_021071|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##AK291662|ART4|420|ADP-ribosyltransferase 4 (Dombrock blood group)##BC009200|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##X69549|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L07916|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##AK311807|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_001175|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##L20688|ARHGDIB|397|Rho GDP dissociation inhibitor (GDI) beta##NM_006205|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##DQ980604|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##D45399|PDE6H|5149|phosphodiesterase 6H, cGMP-specific, cone, gamma##AK311016|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##BC007997|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK295343|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##AK313881|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_001190726|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor##NM_032918|RERG|85004|RAS-like, estrogen-regulated, growth inhibitor	0.746571	0.0	denovo_WM_7:-4:0.617
chr1	246106432	246106555	reg1013377.p2	4.104	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-788185	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-972810	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-972863	+	AK024733 NM_022743	474218	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	564061	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	564115	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	1.996521	0.0	denovo_WM_7:-10:0.494	denovo_WM_7:-11:0.494
chr12	95233217	95233356	reg1014962.p2	4.104	+	EU831778 EU831856 BC040535 NM_020698	-189022	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	-379554	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	-379644	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	164184	-	TSC_hg19_v1_chr12_-_95397487 NM_018838	164230	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	234012	-	EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1	0.0	0.0	
chr17	7790840	7790947	reg1015281.p1	4.104	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	-2782	+	TSC_hg19_v1_chr17_+_7761320 BC060779 AK289520	-29548	+	BC033861 NM_032356 BC051846 TSC_hg19_v1_chr17_-_7761246	-29685	-	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	1208	+	TSC_hg19_v1_chr17_+_7812703 AK096555	21867	+	AF016411 BC096232 BC096233 BC096234 BC099634 NM_004732	41859	-	NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##BC060779|CYB5D1|124637|cytochrome b5 domain containing 1##AK289520|CYB5D1|124637|cytochrome b5 domain containing 1##BC033861|LSMD1|84316|LSM domain containing 1##NM_032356|LSMD1|84316|LSM domain containing 1##BC051846|LSMD1|84316|LSM domain containing 1##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3##AF016411|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096232|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096233|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC096234|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##BC099634|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3##NM_004732|KCNAB3|9196|potassium voltage-gated channel, shaker-related subfamily, beta member 3	0.0	0.0	
chr18	65085187	65085294	reg1010280.p1	4.104	+	AJ007607 NM_021153 AK304000 AK315257 BC015877	-813929	-	AB035301 NM_004361 TSC_hg19_v1_chr18_+_63418247	-1667038	+	TSC_hg19_v1_chr18_+_63417845 BC036786	-1667374	+	AK021849 TSC_hg19_v1_chr18_-_65182656	97343	-	TSC_hg19_v1_chr18_-_65183956 NM_032160	98706	-	AM393206 AM393295 CU689334 TSC_hg19_v1_chr18_-_66382307 AK307269 AK295551 BC032325 AL832341 AL832356 BC093792 BC093794 BC143400 AB058733	1297026	-	AJ007607|CDH19|28513|cadherin 19, type 2##NM_021153|CDH19|28513|cadherin 19, type 2##AK304000|CDH19|28513|cadherin 19, type 2##AK315257|CDH19|28513|cadherin 19, type 2##BC015877|CDH19|28513|cadherin 19, type 2##AB035301|CDH7|1005|cadherin 7, type 2##NM_004361|CDH7|1005|cadherin 7, type 2##BC036786|CDH7|1005|cadherin 7, type 2##AK021849|DSEL|92126|dermatan sulfate epimerase-like##NM_032160|DSEL|92126|dermatan sulfate epimerase-like##AM393206|TMX3|54495|thioredoxin-related transmembrane protein 3##AM393295|TMX3|54495|thioredoxin-related transmembrane protein 3##AK307269|TMX3|54495|thioredoxin-related transmembrane protein 3##AK295551|TMX3|54495|thioredoxin-related transmembrane protein 3##BC032325|TMX3|54495|thioredoxin-related transmembrane protein 3##AL832341|TMX3|54495|thioredoxin-related transmembrane protein 3##AL832356|TMX3|54495|thioredoxin-related transmembrane protein 3##BC093792|TMX3|54495|thioredoxin-related transmembrane protein 3##BC093794|TMX3|54495|thioredoxin-related transmembrane protein 3##BC143400|TMX3|54495|thioredoxin-related transmembrane protein 3##AB058733|TMX3|54495|thioredoxin-related transmembrane protein 3	0.993335	0.0	
chr3	136586192	136586303	reg1016694.p1	4.104	+	TSC_hg19_v1_chr3_+_136581074 X17576 AK312692	-5155	+	TSC_hg19_v1_chr3_+_136581071 NM_006153 BC006403	-5207	+	BC050423 NM_001097599 NM_001097600 NM_025246 TSC_hg19_v1_chr3_+_136537897 BC022557 AK314079 BC000111 AL136661	-48328	+	NM_001190796 TSC_hg19_v1_chr3_+_136649346 AK301460	63090	+	AY358305 NM_144717 AK316084 AK296832 BC063696 BC033292 CU687808	90583	+	NM_004189 AK314127 TSC_hg19_v1_chr3_+_137483154	896900	+	X17576|NCK1|4690|NCK adaptor protein 1##AK312692|NCK1|4690|NCK adaptor protein 1##NM_006153|NCK1|4690|NCK adaptor protein 1##BC006403|NCK1|4690|NCK adaptor protein 1##BC050423|TMEM22|80723|transmembrane protein 22##NM_001097599|TMEM22|80723|transmembrane protein 22##NM_001097600|TMEM22|80723|transmembrane protein 22##NM_025246|TMEM22|80723|transmembrane protein 22##BC022557|TMEM22|80723|transmembrane protein 22##AK314079|TMEM22|80723|transmembrane protein 22##BC000111|TMEM22|80723|transmembrane protein 22##AL136661|TMEM22|80723|transmembrane protein 22##NM_001190796|NCK1|4690|NCK adaptor protein 1##AK301460|NCK1|4690|NCK adaptor protein 1##AY358305|IL20RB|53833|interleukin 20 receptor beta##NM_144717|IL20RB|53833|interleukin 20 receptor beta##AK316084|IL20RB|53833|interleukin 20 receptor beta##AK296832|IL20RB|53833|interleukin 20 receptor beta##BC063696|IL20RB|53833|interleukin 20 receptor beta##BC033292|IL20RB|53833|interleukin 20 receptor beta##NM_004189|SOX14|8403|SRY (sex determining region Y)-box 14##AK314127|SOX14|8403|SRY (sex determining region Y)-box 14	0.996142	0.0	
chr6	112629144	112629251	reg1016693.p1	4.104	+	TSC_hg19_v1_chr6_-_112575881 BC066552	-53302	-	TSC_hg19_v1_chr6_-_112575770 AB210027 X91171 NM_001105206 NM_001105207 NM_001105208 NM_001105209 NM_002290	-53392	-	S78569 TSC_hg19_v1_chr6_-_112575748 BC004241 AK304401 BC026237	-53468	-	AK122906 NM_001013734	39334	+	TSC_hg19_v1_chr6_+_114178543 AK074526 NM_002356 BC013004 BC028284 BC068059 D10522 M68956 BC089040 EU832331 EU832416 AB463910	1549537	+	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	1663075	-	BC066552|LAMA4|3910|laminin, alpha 4##AB210027|LAMA4|3910|laminin, alpha 4##X91171|LAMA4|3910|laminin, alpha 4##NM_001105206|LAMA4|3910|laminin, alpha 4##NM_001105207|LAMA4|3910|laminin, alpha 4##NM_001105208|LAMA4|3910|laminin, alpha 4##NM_001105209|LAMA4|3910|laminin, alpha 4##NM_002290|LAMA4|3910|laminin, alpha 4##S78569|LAMA4|3910|laminin, alpha 4##BC004241|LAMA4|3910|laminin, alpha 4##AK304401|LAMA4|3910|laminin, alpha 4##BC026237|LAMA4|3910|laminin, alpha 4##AK122906|RFPL4B|442247|ret finger protein-like 4B##NM_001013734|RFPL4B|442247|ret finger protein-like 4B##AK074526|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##NM_002356|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC013004|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC028284|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC068059|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##D10522|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##M68956|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##BC089040|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832331|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##EU832416|MARCKS|4082|myristoylated alanine-rich protein kinase C substrate##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2	0.0	0.0	
chr8	91013076	91013233	reg1019753.p1	4.104	+	TSC_hg19_v1_chr8_-_90996896 AK001017 AK289848 BC071590 BC040519 BX640816 NM_002485 AK312410	-16250	-	TSC_hg19_v1_chr8_-_90996804 AB528582 BC143065 BC143066 BC108650 BC016762 BC005293 AF058696 AF051334 AK223256 BC146797 BC136802 BC136803 BC144413	-16322	-	BC031054 NM_001126111 TSC_hg19_v1_chr8_+_90914816	-98360	+	NM_001359 BC105080 BC105082 BC143669 TSC_hg19_v1_chr8_+_91013704 AK300069 L26050	495	+	AB529128 X06661 BC006478 AK054881 AK312491 BC020864 NM_004929	81861	-	AK300583 AK123958 AL834364 TSC_hg19_v1_chr8_-_91657856	644644	-	AK001017|NBN|4683|nibrin##AK289848|NBN|4683|nibrin##BC071590|NBN|4683|nibrin##BC040519|NBN|4683|nibrin##BX640816|NBN|4683|nibrin##NM_002485|NBN|4683|nibrin##AK312410|NBN|4683|nibrin##BC143065|NBN|4683|nibrin##BC143066|NBN|4683|nibrin##BC108650|NBN|4683|nibrin##BC016762|NBN|4683|nibrin##BC005293|NBN|4683|nibrin##AF058696|NBN|4683|nibrin##AF051334|NBN|4683|nibrin##AK223256|NBN|4683|nibrin##BC146797|NBN|4683|nibrin##BC136802|NBN|4683|nibrin##BC136803|NBN|4683|nibrin##BC144413|NBN|4683|nibrin##BC031054|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001126111|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001359|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105080|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105082|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC143669|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK300069|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##L26050|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##X06661|CALB1|793|calbindin 1, 28kDa##BC006478|CALB1|793|calbindin 1, 28kDa##AK054881|CALB1|793|calbindin 1, 28kDa##AK312491|CALB1|793|calbindin 1, 28kDa##BC020864|CALB1|793|calbindin 1, 28kDa##NM_004929|CALB1|793|calbindin 1, 28kDa##AK300583|TMEM64|169200|transmembrane protein 64##AK123958|TMEM64|169200|transmembrane protein 64##AL834364|TMEM64|169200|transmembrane protein 64	0.0	0.0	
chr1	212081905	212082036	reg1011041.p1	4.103	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-77840	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-78222	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-233062	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	126920	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	127044	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	127148	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	0.0	0.0	
chr2	160568870	160569050	reg1000820.p2	4.103	+	TSC_hg19_v1_chr2_-_160568946 BX641037 BX537650	-54	-	BX647250 AL834381 TSC_hg19_v1_chr2_-_160473021 NM_013450 AB040909	-95941	-	AK127551 BC107570 TSC_hg19_v1_chr2_-_160472070	-96946	-	TSC_hg19_v1_chr2_+_160569016 AK292836 AK299051 AK022973 NM_022826 AK222880	35	+	TSC_hg19_v1_chr2_+_160569027 BC065014	80	+	TSC_hg19_v1_chr2_-_160654668 D14664 AF499000 AK291279 AK125081	85739	-	BX641037|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BX647250|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AL834381|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##NM_013450|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AB040909|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK127551|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BC107570|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK292836|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK299051|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK022973|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##NM_022826|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK222880|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##BC065014|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##D14664|CD302|9936|CD302 molecule##AF499000|CD302|9936|CD302 molecule##AK291279|CD302|9936|CD302 molecule##AK125081|CD302|9936|CD302 molecule	0.0	0.0	
chr12	104964189	104964369	reg1002912.p1	4.102	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-113192	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-113471	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-113508	+	TSC_hg19_v1_chr12_+_105153261 AF131762	188998	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	357984	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	415811	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.0	0.0	
chr12	44251067	44251224	reg1015437.p2	4.102	+	TSC_hg19_v1_chr12_+_44229883 BC042192 BC060798 AK057287 BC030284 AL136855 NM_032256	-21239	+	AK127868 BT019691 CR541736 CR541761 AB209302 AB384914 TSC_hg19_v1_chr12_-_44200120 AK291223 BC022491 BC022344 U02680 BC068548 EU832120 EU832214 AK297206 BC043148 NM_001242397 NM_002822	-51033	-	TSC_hg19_v1_chr12_+_44152777 BC013316 AY340962 AY340963 AY340964 AY340965 AY340966 AY340967 AF155118 AK000528	-98366	+	D89629 AK315960 AK299277 NM_001145109	1018246	-	BC020544 TSC_hg19_v1_chr12_-_45269991	1018832	-	TSC_hg19_v1_chr12_-_45270099 AK056082 AK297521 AK309825 D83018	1018960	-	BC042192|TMEM117|84216|transmembrane protein 117##BC060798|TMEM117|84216|transmembrane protein 117##AK057287|TMEM117|84216|transmembrane protein 117##BC030284|TMEM117|84216|transmembrane protein 117##AL136855|TMEM117|84216|transmembrane protein 117##NM_032256|TMEM117|84216|transmembrane protein 117##AK127868|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BT019691|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541736|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##CR541761|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AB209302|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK291223|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022491|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC022344|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##U02680|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC068548|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832120|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##EU832214|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##AK297206|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC043148|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_001242397|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##NM_002822|TWF1|5756|twinfilin, actin-binding protein, homolog 1 (Drosophila)##BC013316|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340962|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340963|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340964|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340965|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340966|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AY340967|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AF155118|IRAK4|51135|interleukin-1 receptor-associated kinase 4##AK000528|IRAK4|51135|interleukin-1 receptor-associated kinase 4##D89629|NELL2|4753|NEL-like 2 (chicken)##AK315960|NELL2|4753|NEL-like 2 (chicken)##AK299277|NELL2|4753|NEL-like 2 (chicken)##NM_001145109|NELL2|4753|NEL-like 2 (chicken)##BC020544|NELL2|4753|NEL-like 2 (chicken)##AK056082|NELL2|4753|NEL-like 2 (chicken)##AK297521|NELL2|4753|NEL-like 2 (chicken)##AK309825|NELL2|4753|NEL-like 2 (chicken)##D83018|NELL2|4753|NEL-like 2 (chicken)	0.985753	0.0	denovo_WM_7:-20:0.465	denovo_WM_7:-21:0.521
chr14	56014817	56014914	reg1011454.p2	4.102	+	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	-107568	-	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	-136309	-	NM_152231	-275994	+	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	31951	-	TSC_hg19_v1_chr14_+_56046963 NM_001079521 NM_001079522 NM_004986 NM_182926 BC066337 D13629 AK302797 BC050555 BC058736 Z22551 AY264265 BC112337	32237	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	63884	+	AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_152231|FBXO34|55030|F-box protein 34##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##NM_001079521|KTN1|3895|kinectin 1 (kinesin receptor)##NM_001079522|KTN1|3895|kinectin 1 (kinesin receptor)##NM_004986|KTN1|3895|kinectin 1 (kinesin receptor)##NM_182926|KTN1|3895|kinectin 1 (kinesin receptor)##BC066337|KTN1|3895|kinectin 1 (kinesin receptor)##D13629|KTN1|3895|kinectin 1 (kinesin receptor)##AK302797|KTN1|3895|kinectin 1 (kinesin receptor)##BC050555|KTN1|3895|kinectin 1 (kinesin receptor)##BC058736|KTN1|3895|kinectin 1 (kinesin receptor)##Z22551|KTN1|3895|kinectin 1 (kinesin receptor)##AY264265|KTN1|3895|kinectin 1 (kinesin receptor)##BC112337|KTN1|3895|kinectin 1 (kinesin receptor)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)	0.96031	0.0	denovo_WM_7:-13:0.832
chr17	45174590	45174761	reg1010122.p1	4.102	+	BC108690 BC033942 NM_203400	-118075	-	TSC_hg19_v1_chr17_+_45000525 AK303650 AK290890 BC009710 AF229796 BC034762 CU679451 AF007548 DQ891461 DQ894638	-174130	+	TSC_hg19_v1_chr17_+_45000492 NM_001012511 NM_004287 NM_054022	-174188	+	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	91903	-	TSC_hg19_v1_chr17_-_45266641 AK299342	91964	-	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	92009	-	BC108690|RPRML|388394|reprimo-like##BC033942|RPRML|388394|reprimo-like##NM_203400|RPRML|388394|reprimo-like##AK290890|GOSR2|9570|golgi SNAP receptor complex member 2##BC009710|GOSR2|9570|golgi SNAP receptor complex member 2##AF229796|GOSR2|9570|golgi SNAP receptor complex member 2##BC034762|GOSR2|9570|golgi SNAP receptor complex member 2##AF007548|GOSR2|9570|golgi SNAP receptor complex member 2##DQ891461|GOSR2|9570|golgi SNAP receptor complex member 2##DQ894638|GOSR2|9570|golgi SNAP receptor complex member 2##NM_001012511|GOSR2|9570|golgi SNAP receptor complex member 2##NM_004287|GOSR2|9570|golgi SNAP receptor complex member 2##NM_054022|GOSR2|9570|golgi SNAP receptor complex member 2##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)	1.564814	0.0	denovo_WM_7:81:0.541	denovo_WM_7:-86:0.295	denovo_WM_7:-87:0.295	denovo_WM_7:-88:0.295
chr19	54013774	54013861	reg1010201.p2	4.102	+	NM_001004301	-42829	+	TSC_hg19_v1_chr19_+_53935248 BC103708 AK094777	-78571	+	BX647962 TSC_hg19_v1_chr19_+_53935241	-78577	+	NM_018555 CR749560 AK128736 BC009433	10456	+	NM_001079906 AK312889 TSC_hg19_v1_chr19_+_54041398 AK075226 AF412402 NM_001253798 NM_001253799	27618	+	AF251515 NM_001253800 AF412399	28237	+	NM_001004301|ZNF813|126017|zinc finger protein 813##BC103708|ZNF761|388561|zinc finger protein 761##AK094777|LOC147804|147804|tropomyosin 3 pseudogene##BX647962|LOC147804|147804|tropomyosin 3 pseudogene##NM_018555|ZNF331|55422|zinc finger protein 331##CR749560|ZNF331|55422|zinc finger protein 331##AK128736|ZNF331|55422|zinc finger protein 331##BC009433|ZNF331|55422|zinc finger protein 331##NM_001079906|ZNF331|55422|zinc finger protein 331##AK312889|ZNF331|55422|zinc finger protein 331##AK075226|ZNF331|55422|zinc finger protein 331##AF412402|ZNF331|55422|zinc finger protein 331##NM_001253798|ZNF331|55422|zinc finger protein 331##NM_001253799|ZNF331|55422|zinc finger protein 331##AF251515|ZNF331|55422|zinc finger protein 331##NM_001253800|ZNF331|55422|zinc finger protein 331##AF412399|ZNF331|55422|zinc finger protein 331	0.0	0.0	
chr19	54883877	54884000	reg1005131.p1	4.102	+	AK303261 TSC_hg19_v1_chr19_-_54882123 AK097869	-1846	-	TSC_hg19_v1_chr19_-_54876672 NM_002287 NM_021706	-7243	-	TSC_hg19_v1_chr19_-_54876541 AK290415 AK315419	-7387	-	AB188496 NM_001005367 NM_001201461 NM_020659 TSC_hg19_v1_chr19_+_54926657 AK289468 AK293468 BC065919 AF177909 BC011347	42713	+	AB162930 TSC_hg19_v1_chr19_+_54926723	42784	+	NM_052925	76126	+	AK303261|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK097869|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_002287|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##NM_021706|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK290415|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AK315419|LAIR1|3903|leukocyte-associated immunoglobulin-like receptor 1##AB188496|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001005367|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_001201461|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_020659|TTYH1|57348|tweety homolog 1 (Drosophila)##AK289468|TTYH1|57348|tweety homolog 1 (Drosophila)##AK293468|TTYH1|57348|tweety homolog 1 (Drosophila)##BC065919|TTYH1|57348|tweety homolog 1 (Drosophila)##AF177909|TTYH1|57348|tweety homolog 1 (Drosophila)##BC011347|TTYH1|57348|tweety homolog 1 (Drosophila)##AB162930|TTYH1|57348|tweety homolog 1 (Drosophila)##NM_052925|LENG8|114823|leukocyte receptor cluster (LRC) member 8	0.0	0.0	
chr19	949605	949749	reg1011593.p2	4.102	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-23666	+	TSC_hg19_v1_chr19_+_917306 BC141812 NM_032551 AY253982 BC140825 AB051065 AF343725 AJ309020 AY029541 AY253981 BC111094 EU883577	-32284	+	NM_138774 TSC_hg19_v1_chr19_-_913224	-36453	-	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	34657	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	50688	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	71381	-	AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC141812|KISS1R|84634|KISS1 receptor##NM_032551|KISS1R|84634|KISS1 receptor##AY253982|KISS1R|84634|KISS1 receptor##BC140825|KISS1R|84634|KISS1 receptor##AB051065|KISS1R|84634|KISS1 receptor##AF343725|KISS1R|84634|KISS1 receptor##AJ309020|KISS1R|84634|KISS1 receptor##AY029541|KISS1R|84634|KISS1 receptor##AY253981|KISS1R|84634|KISS1 receptor##EU883577|KISS1R|84634|KISS1 receptor##NM_138774|R3HDM4|91300|R3H domain containing 4##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6	0.990765	0.014335	denovo_WM_7:7:0.237	denovo_WM_7:8:0.237	denovo_WM_7:9:0.237	denovo_WM_7:10:0.237
chr3	179646925	179647075	reg1017125.p2	4.102	+	TSC_hg19_v1_chr3_+_179370901 NM_003940 U75362 BC016146 AK290338 AM393315 AM393392 AM393610 AM393780 DQ892472 DQ895684	-276105	+	TSC_hg19_v1_chr3_+_179322594 NM_001199957 NM_001199958 NM_002492 BX648034 BC005271 BC009796 AK313822 AF047181 BC093071 BC017909 CU679497	-324407	+	AY212270 BC032522 TSC_hg19_v1_chr3_-_179322427 BC021575 NM_020409 NM_177988	-324578	-	AB032593 NM_016559 AB032592 TSC_hg19_v1_chr3_-_179754937 AK299633 AK294501 AK314283 BC036183	107726	-	TSC_hg19_v1_chr3_+_180319985 NM_001042601 NM_133462 AK055984 AL832052 AL833086 BX648669 BC027990 AL833103 AY358762 AK074095 EU832789 GQ129409 CU693360	673003	+	AB075860 TSC_hg19_v1_chr3_+_180320970	673963	+	NM_003940|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##U75362|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##BC016146|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AK290338|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393315|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393392|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393610|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393780|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ892472|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ895684|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##NM_001199957|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_001199958|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_002492|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BX648034|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC005271|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC009796|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AK313822|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AF047181|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC093071|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC017909|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AY212270|MRPL47|57129|mitochondrial ribosomal protein L47##BC032522|MRPL47|57129|mitochondrial ribosomal protein L47##BC021575|MRPL47|57129|mitochondrial ribosomal protein L47##NM_020409|MRPL47|57129|mitochondrial ribosomal protein L47##NM_177988|MRPL47|57129|mitochondrial ribosomal protein L47##AB032593|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_016559|PEX5L|51555|peroxisomal biogenesis factor 5-like##AB032592|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK299633|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK294501|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK314283|PEX5L|51555|peroxisomal biogenesis factor 5-like##BC036183|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_001042601|TTC14|151613|tetratricopeptide repeat domain 14##NM_133462|TTC14|151613|tetratricopeptide repeat domain 14##AK055984|TTC14|151613|tetratricopeptide repeat domain 14##AL832052|TTC14|151613|tetratricopeptide repeat domain 14##AL833086|TTC14|151613|tetratricopeptide repeat domain 14##BX648669|TTC14|151613|tetratricopeptide repeat domain 14##BC027990|TTC14|151613|tetratricopeptide repeat domain 14##AL833103|TTC14|151613|tetratricopeptide repeat domain 14##AY358762|TTC14|151613|tetratricopeptide repeat domain 14##EU832789|TTC14|151613|tetratricopeptide repeat domain 14##GQ129409|TTC14|151613|tetratricopeptide repeat domain 14##AB075860|TTC14|151613|tetratricopeptide repeat domain 14	0.0	0.986655	CTCF.p2:31:0.987
chr3	27761932	27762101	reg1014964.p2	4.102	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-236086	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-236191	-	AF047033 AF089726 NM_003615	-263772	-	AB031038 BC131712 NM_005442 AB463608 BC037568	1777	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	2185	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	521082	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	1.996616	0.0	
chr3	51572626	51572730	reg1011979.p2	4.102	+	TSC_hg19_v1_chr3_-_51534015 AB018343 BC110371 NM_001171904 NM_014703	-38672	-	BC022792 TSC_hg19_v1_chr3_-_51533986	-38729	-	TSC_hg19_v1_chr3_+_51428730 BC121184 BC139836	-143928	+	AK122683 NM_015106	2917	+	NM_001129884 NM_001243727 NM_015926 TSC_hg19_v1_chr3_+_51705247 AK023997 AK222938 AK222949 BC008742 NM_001243725 NM_001243726 AY358972 BC001592	132588	+	NM_000839 NM_001130063 AK315816 AK289984 AK313056 BC041447	168414	+	AB018343|VPRBP|9730|Vpr (HIV-1) binding protein##BC110371|VPRBP|9730|Vpr (HIV-1) binding protein##NM_001171904|VPRBP|9730|Vpr (HIV-1) binding protein##NM_014703|VPRBP|9730|Vpr (HIV-1) binding protein##BC022792|VPRBP|9730|Vpr (HIV-1) binding protein##BC121184|RBM15B|29890|RNA binding motif protein 15B##BC139836|RBM15B|29890|RNA binding motif protein 15B##AK122683|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_015106|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_001129884|TEX264|51368|testis expressed 264##NM_001243727|TEX264|51368|testis expressed 264##NM_015926|TEX264|51368|testis expressed 264##AK023997|TEX264|51368|testis expressed 264##AK222938|TEX264|51368|testis expressed 264##AK222949|TEX264|51368|testis expressed 264##BC008742|TEX264|51368|testis expressed 264##NM_001243725|TEX264|51368|testis expressed 264##NM_001243726|TEX264|51368|testis expressed 264##AY358972|TEX264|51368|testis expressed 264##BC001592|TEX264|51368|testis expressed 264##NM_000839|GRM2|2912|glutamate receptor, metabotropic 2##NM_001130063|GRM2|2912|glutamate receptor, metabotropic 2##AK315816|GRM2|2912|glutamate receptor, metabotropic 2##AK289984|GRM2|2912|glutamate receptor, metabotropic 2##AK313056|GRM2|2912|glutamate receptor, metabotropic 2##BC041447|GRM2|2912|glutamate receptor, metabotropic 2	0.0	0.0	
chr7	105233839	105233936	reg1011467.p2	4.102	+	TSC_hg19_v1_chr7_-_105221933 BC062748 BC105284	-11952	-	BC068483 NM_021930 AK055508 TSC_hg19_v1_chr7_+_105172647 AK308126 AF317622 HQ257980	-61241	+	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	-71226	-	AK300338 NM_138495	85721	-	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	283098	-	TSC_hg19_v1_chr7_+_105517250 AK125261	283377	+	BC105284|EFCAB10|100130771|EF-hand calcium binding domain 10##BC068483|RINT1|60561|RAD50 interactor 1##NM_021930|RINT1|60561|RAD50 interactor 1##AK055508|RINT1|60561|RAD50 interactor 1##AK308126|RINT1|60561|RAD50 interactor 1##AF317622|RINT1|60561|RAD50 interactor 1##HQ257980|RINT1|60561|RAD50 interactor 1##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK300338|ATXN7L1|222255|ataxin 7-like 1##NM_138495|ATXN7L1|222255|ataxin 7-like 1##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##AK125261|CDHR3|222256|cadherin-related family member 3	1.985498	0.0	denovo_WM_7:55:0.266	denovo_WM_7:56:0.716	denovo_WM_7:71:0.852
chr12	133345101	133345201	reg1008508.p2	4.101	+	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-6731	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-38593	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	-57715	+	BC048203 TSC_hg19_v1_chr12_-_133372555	27406	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	59828	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	60147	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3	0.0	0.991825	CTCF.p2:5:0.992
chr14	50090772	50090952	reg1015980.p1	4.101	+	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	-3155	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	-3518	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	-25402	+	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	9834	-	FJ158843 TSC_hg19_v1_chr14_-_50101912	11030	-	TSC_hg19_v1_chr14_-_50101963 BX248765 NM_001083908 NM_018139	11092	-	NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2##FJ158843|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248765|DNAAF2|55172|dynein, axonemal, assembly factor 2##NM_001083908|DNAAF2|55172|dynein, axonemal, assembly factor 2##NM_018139|DNAAF2|55172|dynein, axonemal, assembly factor 2	0.992697	0.0	denovo_WM_7:-44:0.649
chr14	67901605	67901712	reg1014754.p1	4.101	+	TSC_hg19_v1_chr14_-_67878872 BC001226	-22787	-	BC008056 AB528314 DQ891238 DQ894423 TSC_hg19_v1_chr14_-_67878843 AF228603 NM_016445	-22847	-	AB587562 DQ892151 DQ895347 TSC_hg19_v1_chr14_+_67831578	-70127	+	NM_182526 TSC_hg19_v1_chr14_-_67982162 AK090706 AX746582	80452	-	AK307428 NM_020715 TSC_hg19_v1_chr14_+_68000028 AB033026 BC146787	98315	+	BT006804 CU678574 BC071849 BC004100 L19783 AK314108 AK293584 NM_004569	165309	-	BC001226|PLEK2|26499|pleckstrin 2##BC008056|PLEK2|26499|pleckstrin 2##DQ891238|PLEK2|26499|pleckstrin 2##DQ894423|PLEK2|26499|pleckstrin 2##AF228603|PLEK2|26499|pleckstrin 2##NM_016445|PLEK2|26499|pleckstrin 2##DQ892151|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##DQ895347|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##NM_182526|TMEM229B|161145|transmembrane protein 229B##AK090706|TMEM229B|161145|transmembrane protein 229B##AK307428|PLEKHH1|57475|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1##NM_020715|PLEKHH1|57475|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1##AB033026|PLEKHH1|57475|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1##BC146787|PLEKHH1|57475|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1##BT006804|PIGH|5283|phosphatidylinositol glycan anchor biosynthesis, class H##BC071849|PIGH|5283|phosphatidylinositol glycan anchor biosynthesis, class H##BC004100|PIGH|5283|phosphatidylinositol glycan anchor biosynthesis, class H##L19783|PIGH|5283|phosphatidylinositol glycan anchor biosynthesis, class H##AK314108|PIGH|5283|phosphatidylinositol glycan anchor biosynthesis, class H##NM_004569|PIGH|5283|phosphatidylinositol glycan anchor biosynthesis, class H	0.996253	0.0	denovo_WM_7:36:0.826
chr1	88867126	88867256	reg1012972.p1	4.101	+	TSC_hg19_v1_chr1_+_87797426 BC065818	-1069776	+	TSC_hg19_v1_chr1_+_87797312 AY321514	-1069866	+	TSC_hg19_v1_chr1_+_87794576 BC017673 BC003600	-1072510	+	TSC_hg19_v1_chr1_+_89149955 NM_006256 AK300304 AK298595 BC125199 S75548 U33052 AB527857	282904	+	AB451296 AB587461 CU676570 EU446894 TSC_hg19_v1_chr1_-_89357213 AX721092 M76766 BC021000	490020	-	AK289822 BC020597 TSC_hg19_v1_chr1_-_89357248 NM_001514	490082	-	BC065818|LMO4|8543|LIM domain only 4##BC017673|LMO4|8543|LIM domain only 4##BC003600|LMO4|8543|LIM domain only 4##NM_006256|PKN2|5586|protein kinase N2##AK300304|PKN2|5586|protein kinase N2##AK298595|PKN2|5586|protein kinase N2##BC125199|PKN2|5586|protein kinase N2##S75548|PKN2|5586|protein kinase N2##U33052|PKN2|5586|protein kinase N2##AB451296|GTF2B|2959|general transcription factor IIB##EU446894|GTF2B|2959|general transcription factor IIB##M76766|GTF2B|2959|general transcription factor IIB##AK289822|GTF2B|2959|general transcription factor IIB##BC020597|GTF2B|2959|general transcription factor IIB##NM_001514|GTF2B|2959|general transcription factor IIB	0.0	0.0	
chr19	44066835	44066993	reg1017238.p1	4.101	+	TSC_hg19_v1_chr19_+_44037567 BC043611 NM_174945 AK301820	-29402	+	TSC_hg19_v1_chr19_-_44031351 AM392804 AB463613 AK309880 BC008250 AK315346 D83198 NM_014297	-35553	-	BC029299 NM_198850 BC070094	-57879	-	CR456728 AB384718 BC023593 TSC_hg19_v1_chr19_-_44079680 AB208781	12734	-	AK293542 TSC_hg19_v1_chr19_-_44079716 AK300163 AK315332 NM_006297	12813	-	AK296854 NM_001193621	14037	+	BC043611|ZNF575|284346|zinc finger protein 575##NM_174945|ZNF575|284346|zinc finger protein 575##AK301820|ZNF575|284346|zinc finger protein 575##AM392804|ETHE1|23474|ethylmalonic encephalopathy 1##AK309880|ETHE1|23474|ethylmalonic encephalopathy 1##BC008250|ETHE1|23474|ethylmalonic encephalopathy 1##AK315346|ETHE1|23474|ethylmalonic encephalopathy 1##D83198|ETHE1|23474|ethylmalonic encephalopathy 1##NM_014297|ETHE1|23474|ethylmalonic encephalopathy 1##BC029299|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##NM_198850|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##BC070094|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##CR456728|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##BC023593|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AB208781|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK293542|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK300163|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK315332|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##NM_006297|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AK296854|LOC390940|390940|uncharacterized protein ENSP00000244321##NM_001193621|LOC390940|390940|uncharacterized protein ENSP00000244321	0.0	0.0	
chr2	112664243	112664367	reg1014529.p1	4.101	+	TSC_hg19_v1_chr2_+_112656224 BC114917 BC114918	-8085	+	TSC_hg19_v1_chr2_+_112656183 AK316584 U08023 NM_006343	-8120	+	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	-22544	-	NM_032824 AK027587 TSC_hg19_v1_chr2_+_112812871	148536	+	TSC_hg19_v1_chr2_+_112812903 BC115373	148642	+	TSC_hg19_v1_chr2_+_112813153 AK290294 AY429534 AY429535	148882	+	BC114917|MERTK|10461|c-mer proto-oncogene tyrosine kinase##BC114918|MERTK|10461|c-mer proto-oncogene tyrosine kinase##AK316584|MERTK|10461|c-mer proto-oncogene tyrosine kinase##U08023|MERTK|10461|c-mer proto-oncogene tyrosine kinase##NM_006343|MERTK|10461|c-mer proto-oncogene tyrosine kinase##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1##NM_032824|TMEM87B|84910|transmembrane protein 87B##AK027587|TMEM87B|84910|transmembrane protein 87B##BC115373|TMEM87B|84910|transmembrane protein 87B##AK290294|TMEM87B|84910|transmembrane protein 87B##AY429534|TMEM87B|84910|transmembrane protein 87B##AY429535|TMEM87B|84910|transmembrane protein 87B	0.252293	0.0	denovo_WM_7:22:0.211
chr2	61653554	61653669	reg1015395.p1	4.101	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-248822	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-248969	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-249028	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	44246	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	44332	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	111147	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	0.0	0.093299	
chr1	145399366	145399481	reg1011052.p1	4.100	+	AY894562 AY894570 NM_001039703	-106122	+	TSC_hg19_v1_chr1_+_145209107 NM_203458 BC010154 AK075065 BC090943 BC019835 AK092351 AK098372 AX747492 BC065219 AK293876 BC084572	-190302	+	TSC_hg19_v1_chr1_+_145096519 CU674670 DQ892584 DQ895801	-302891	+	NM_145277 NM_202004 NM_213652 NM_213653 AK223575 AK092682 AK315852 AX747669 BC017926 AK096905 AK290831 AK292742 AK092692 AK124273 AX747673 BC085604	13840	+	TSC_hg19_v1_chr1_+_145438489 NM_006472 AK301203 BX537824 AK226090 S73591 BC093702 BC093704 AB527234 AY594328 BC024305 AK301148	39253	+	TSC_hg19_v1_chr1_-_145470375 AK092209 AK056984 BC004355 NM_032305 BC050418	70965	-	AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894570|NBPF8|728841|neuroblastoma breakpoint family, member 8##NM_001039703|NBPF10|100132406|neuroblastoma breakpoint family, member 10##NM_203458|NOTCH2NL|388677|notch 2 N-terminal like##BC010154|NOTCH2NL|388677|notch 2 N-terminal like##AK075065|NOTCH2NL|388677|notch 2 N-terminal like##BC090943|NOTCH2NL|388677|notch 2 N-terminal like##BC019835|NOTCH2NL|388677|notch 2 N-terminal like##BC065219|NOTCH2NL|388677|notch 2 N-terminal like##BC084572|NOTCH2NL|388677|notch 2 N-terminal like##DQ892584|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##DQ895801|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##NM_145277|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_202004|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213652|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213653|HFE2|148738|hemochromatosis type 2 (juvenile)##AK223575|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092682|HFE2|148738|hemochromatosis type 2 (juvenile)##AK315852|HFE2|148738|hemochromatosis type 2 (juvenile)##BC017926|HFE2|148738|hemochromatosis type 2 (juvenile)##AK096905|HFE2|148738|hemochromatosis type 2 (juvenile)##AK290831|HFE2|148738|hemochromatosis type 2 (juvenile)##AK292742|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092692|HFE2|148738|hemochromatosis type 2 (juvenile)##AK124273|HFE2|148738|hemochromatosis type 2 (juvenile)##BC085604|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_006472|TXNIP|10628|thioredoxin interacting protein##AK301203|TXNIP|10628|thioredoxin interacting protein##BX537824|TXNIP|10628|thioredoxin interacting protein##AK226090|TXNIP|10628|thioredoxin interacting protein##S73591|TXNIP|10628|thioredoxin interacting protein##BC093702|TXNIP|10628|thioredoxin interacting protein##BC093704|TXNIP|10628|thioredoxin interacting protein##AY594328|TXNIP|10628|thioredoxin interacting protein##BC024305|TXNIP|10628|thioredoxin interacting protein##AK301148|TXNIP|10628|thioredoxin interacting protein##AK092209|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK056984|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC004355|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##NM_032305|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC050418|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like	0.0	0.0	
chr15	67442787	67442967	reg1001311.p1	4.100	+	AK298139 NM_001145103	-12519	+	NM_001145102 AK316017	-24754	+	NM_005902 TSC_hg19_v1_chr15_+_67358197 BC050743 U68019 U76622 AB464213 EU446487 AB209616	-84476	+	NM_001145104 AK300614 AK301348	15619	+	AB528136 AM393020 AM393411 CR533540 CU691322 TSC_hg19_v1_chr15_-_67547000 AK021568 AL136715 BC058886 BC047026 BC035852 NM_024666	104143	-	TSC_hg19_v1_chr15_+_67547171 BC039463 NM_001031715 NM_022784 AY014282 AK292478 AK304303 BC031041 BC048964 BC039292 AK022538 CU690588	104297	+	AK298139|SMAD3|4088|SMAD family member 3##NM_001145103|SMAD3|4088|SMAD family member 3##NM_001145102|SMAD3|4088|SMAD family member 3##AK316017|SMAD3|4088|SMAD family member 3##NM_005902|SMAD3|4088|SMAD family member 3##BC050743|SMAD3|4088|SMAD family member 3##U68019|SMAD3|4088|SMAD family member 3##U76622|SMAD3|4088|SMAD family member 3##EU446487|SMAD3|4088|SMAD family member 3##AB209616|SMAD3|4088|SMAD family member 3##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3##AM393020|AAGAB|79719|alpha- and gamma-adaptin binding protein##AM393411|AAGAB|79719|alpha- and gamma-adaptin binding protein##CR533540|AAGAB|79719|alpha- and gamma-adaptin binding protein##AK021568|AAGAB|79719|alpha- and gamma-adaptin binding protein##AL136715|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC058886|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC047026|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC035852|AAGAB|79719|alpha- and gamma-adaptin binding protein##NM_024666|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC039463|IQCH|64799|IQ motif containing H##NM_001031715|IQCH|64799|IQ motif containing H##NM_022784|IQCH|64799|IQ motif containing H##AY014282|IQCH|64799|IQ motif containing H##AK292478|IQCH|64799|IQ motif containing H##AK304303|IQCH|64799|IQ motif containing H##BC031041|IQCH|64799|IQ motif containing H##BC048964|IQCH|64799|IQ motif containing H##BC039292|IQCH|64799|IQ motif containing H##AK022538|IQCH|64799|IQ motif containing H	0.803857	0.0	denovo_WM_7:-53:0.265
chr22	45216291	45216359	reg1019668.p1	4.100	+	AK001306 NM_001017526 NM_001198726 NM_181335 BC059382 BC067824 BC048280	-67864	+	AK291564 TSC_hg19_v1_chr22_+_45098246 AF177331 AL355192 NM_181334	-118072	+	TSC_hg19_v1_chr22_+_45098090 NM_181333	-118257	+	TSC_hg19_v1_chr22_-_45404785 AK299836 AK297317 AK091480 AX747013 NM_001242450	188504	-	AB489146 CU012999 CU013287 CU680262 CR456448 BC012187 NM_138415	189179	-	TSC_hg19_v1_chr22_-_45405781 AK092243 AX747427 NM_001135862	189469	-	AK001306|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001017526|ARHGAP8|23779|Rho GTPase activating protein 8##NM_001198726|ARHGAP8|23779|Rho GTPase activating protein 8##NM_181335|ARHGAP8|23779|Rho GTPase activating protein 8##BC059382|ARHGAP8|23779|Rho GTPase activating protein 8##BC067824|ARHGAP8|23779|Rho GTPase activating protein 8##BC048280|ARHGAP8|23779|Rho GTPase activating protein 8##AK291564|PRR5|55615|proline rich 5 (renal)##AF177331|PRR5|55615|proline rich 5 (renal)##AL355192|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181334|PRR5-ARHGAP8|553158|PRR5-ARHGAP8 readthrough##NM_181333|PRR5|55615|proline rich 5 (renal)##AK299836|PHF21B|112885|PHD finger protein 21B##AK297317|PHF21B|112885|PHD finger protein 21B##AK091480|PHF21B|112885|PHD finger protein 21B##NM_001242450|PHF21B|112885|PHD finger protein 21B##CU012999|PHF21B|112885|PHD finger protein 21B##CU013287|PHF21B|112885|PHD finger protein 21B##CR456448|PHF21B|112885|PHD finger protein 21B##BC012187|PHF21B|112885|PHD finger protein 21B##NM_138415|PHF21B|112885|PHD finger protein 21B##AK092243|PHF21B|112885|PHD finger protein 21B##NM_001135862|PHF21B|112885|PHD finger protein 21B	0.0	0.0	
chr6	90538844	90538938	reg1000616.p1	4.100	+	TSC_hg19_v1_chr6_-_90529484 AK124025	-9385	-	TSC_hg19_v1_chr6_-_90529463 AF503925 NM_014611	-9446	-	EU831412 EU831505 TSC_hg19_v1_chr6_-_90348462 AL122090 BC104668 AK311948 BC009782 AK024783 NM_020466	-190428	-	TSC_hg19_v1_chr6_+_90539598 BC056685 NM_001137667 NM_001137668 NM_012115	703	+	BC012574 TSC_hg19_v1_chr6_+_90539629 BC027850 AF154415 BC029386 BC132828 BC132830	808	+	AB527151 AF296766 NM_032602	65295	+	AK124025|MDN1|23195|MDN1, midasin homolog (yeast)##AF503925|MDN1|23195|MDN1, midasin homolog (yeast)##NM_014611|MDN1|23195|MDN1, midasin homolog (yeast)##EU831412|LYRM2|57226|LYR motif containing 2##EU831505|LYRM2|57226|LYR motif containing 2##AL122090|LYRM2|57226|LYR motif containing 2##BC104668|LYRM2|57226|LYR motif containing 2##AK311948|LYRM2|57226|LYR motif containing 2##BC009782|LYRM2|57226|LYR motif containing 2##AK024783|LYRM2|57226|LYR motif containing 2##NM_020466|LYRM2|57226|LYR motif containing 2##BC056685|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137667|CASP8AP2|9994|caspase 8 associated protein 2##NM_001137668|CASP8AP2|9994|caspase 8 associated protein 2##NM_012115|CASP8AP2|9994|caspase 8 associated protein 2##BC012574|CASP8AP2|9994|caspase 8 associated protein 2##BC027850|CASP8AP2|9994|caspase 8 associated protein 2##AF154415|CASP8AP2|9994|caspase 8 associated protein 2##BC029386|CASP8AP2|9994|caspase 8 associated protein 2##BC132828|CASP8AP2|9994|caspase 8 associated protein 2##BC132830|CASP8AP2|9994|caspase 8 associated protein 2##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa	0.997881	0.0	denovo_WM_7:9:0.902
chr6	95663543	95663660	reg1011571.p1	4.100	+	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	-1534418	-	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	-4366763	-	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	-4366918	-	TSC_hg19_v1_chr6_-_96025325 BC047582	361688	-	TSC_hg19_v1_chr6_+_96025418 NM_024641 BX640869 AY048774 AY048775 BC146671 BC150199 CR936827 AK291940 BX537398	361800	+	NM_006581 AK314966 TSC_hg19_v1_chr6_+_96463867 BC001879 BC036101 AB023021	800266	+	BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7##BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_024641|MANEA|79694|mannosidase, endo-alpha##BX640869|MANEA|79694|mannosidase, endo-alpha##AY048774|MANEA|79694|mannosidase, endo-alpha##AY048775|MANEA|79694|mannosidase, endo-alpha##BC146671|MANEA|79694|mannosidase, endo-alpha##BC150199|MANEA|79694|mannosidase, endo-alpha##CR936827|MANEA|79694|mannosidase, endo-alpha##AK291940|MANEA|79694|mannosidase, endo-alpha##BX537398|MANEA|79694|mannosidase, endo-alpha##NM_006581|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##AK314966|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##BC036101|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)##AB023021|FUT9|10690|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)	0.013943	0.0	
chr11	128500194	128500337	reg1008091.p1	4.099	+	BX640634 NM_001143820	-42813	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-108131	-	AY943926 BT019452 BT019453 CR542254 J04101 TSC_hg19_v1_chr11_-_128392038	-108302	-	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	63533	+	TSC_hg19_v1_chr11_+_128563966 AK313370	63696	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	63715	+	BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AY943926|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019452|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BT019453|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##CR542254|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##J04101|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##AK313370|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1	1.987769	0.0	denovo_WM_7:-66:0.889
chr1	204465146	204465278	reg1012582.p1	4.099	+	TSC_hg19_v1_chr1_-_204463934 BC094741	-1447	-	BC132876 BC136645 BC144342 NM_002646 AK308153	-5714	-	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	-84272	-	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	20290	+	AF007111 TSC_hg19_v1_chr1_+_204485599 BC105106 BC143431 BC143432 AY923176	20398	+	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	189379	-	BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC132876|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC136645|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC144342|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_002646|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AK308153|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AF007111|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC105106|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143431|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC143432|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AY923176|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2	0.993439	0.0	
chr12	103763750	103763838	reg1005036.p1	4.099	+	AB464446 DQ894571 EU176303 TSC_hg19_v1_chr12_+_103352164	-411702	+	AK290539 NM_004316 TSC_hg19_v1_chr12_+_103351451 BC001638 BC004425 BC002341 BC003134 BC031299 L08424	-412273	+	L47726 NM_000277 U49897	-452414	-	AK058052 BC039352 BC117392 BC117394 NM_198521 BC044617 NM_001099336	125952	-	AY311388 AJ295695 NM_017564 AB052958	217267	+	AB032773 TSC_hg19_v1_chr12_-_104234857	471030	-	DQ894571|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##EU176303|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##AK290539|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##NM_004316|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC001638|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC004425|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC002341|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC003134|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##BC031299|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L08424|ASCL1|429|achaete-scute complex homolog 1 (Drosophila)##L47726|PAH|5053|phenylalanine hydroxylase##NM_000277|PAH|5053|phenylalanine hydroxylase##U49897|PAH|5053|phenylalanine hydroxylase##AK058052|C12orf42|374470|chromosome 12 open reading frame 42##BC039352|C12orf42|374470|chromosome 12 open reading frame 42##BC117392|C12orf42|374470|chromosome 12 open reading frame 42##BC117394|C12orf42|374470|chromosome 12 open reading frame 42##NM_198521|C12orf42|374470|chromosome 12 open reading frame 42##BC044617|C12orf42|374470|chromosome 12 open reading frame 42##NM_001099336|C12orf42|374470|chromosome 12 open reading frame 42##AY311388|STAB2|55576|stabilin 2##AJ295695|STAB2|55576|stabilin 2##NM_017564|STAB2|55576|stabilin 2##AB052958|STAB2|55576|stabilin 2##AB032773|NT5DC3|51559|5'-nucleotidase domain containing 3	0.0	0.0	
chr16	16221650	16221758	reg1011731.p1	4.099	+	TSC_hg19_v1_chr16_+_16146613 HQ917065	-75086	+	TSC_hg19_v1_chr16_+_16043442 L05628 NM_004996 NM_019862 NM_019898 NM_019899 NM_019900 X78338	-178340	+	AL832498 TSC_hg19_v1_chr16_-_15982471	-239219	-	AF168791 AM711638 AM774324 BC050733 AF076622 BC131732 U66689 NM_001079528 NM_001171 AY078405 AK298295	95616	-	TSC_hg19_v1_chr16_+_16326401 NM_001004067	104693	+	TSC_hg19_v1_chr16_+_16326457 AL832855	104751	+	L05628|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_004996|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019862|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019898|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019899|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##NM_019900|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##X78338|ABCC1|4363|ATP-binding cassette, sub-family C (CFTR/MRP), member 1##AL832498|FOPNL|123811|FGFR1OP N-terminal like##AF168791|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM711638|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AM774324|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC050733|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AF076622|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##BC131732|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001079528|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001171|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AY078405|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##AK298295|ABCC6|368|ATP-binding cassette, sub-family C (CFTR/MRP), member 6##NM_001004067|NOMO3|408050|NODAL modulator 3##AL832855|NOMO2|283820|NODAL modulator 2	0.997986	0.0	
chr18	60173380	60173553	reg1001552.p1	4.099	+	AB209762 AF018253 NM_003839 AB527346	-180916	+	TSC_hg19_v1_chr18_+_59855176 AB384606	-318256	+	TSC_hg19_v1_chr18_+_59854540 BX648481	-318878	+	NM_017742 TSC_hg19_v1_chr18_+_60190696 BC006340	17288	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	209198	+	TSC_hg19_v1_chr18_+_60383911 AB011178	210460	+	AB209762|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##AF018253|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##NM_003839|TNFRSF11A|8792|tumor necrosis factor receptor superfamily, member 11a, NFKB activator##BX648481|KIAA1468|57614|KIAA1468##NM_017742|ZCCHC2|54877|zinc finger, CCHC domain containing 2##BC006340|ZCCHC2|54877|zinc finger, CCHC domain containing 2##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1	0.0	0.0	
chr4	164584258	164584438	reg1000396.p2	4.099	+	AB463878 AK000675 AK301408 NM_017923	-49633	-	TSC_hg19_v1_chr4_+_164415868 BC011842	-168475	+	AK002046 BC005204 TSC_hg19_v1_chr4_+_164415841	-168506	+	NM_012403	534514	-	AK289711 NM_001166373	720058	-	TSC_hg19_v1_chr4_+_165878104 AK056221 NM_153027	1293754	+	AK000675|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK301408|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_017923|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##BC011842|C4orf43|55319|chromosome 4 open reading frame 43##AK002046|C4orf43|55319|chromosome 4 open reading frame 43##BC005204|C4orf43|55319|chromosome 4 open reading frame 43##NM_012403|ANP32C|23520|acidic (leucine-rich) nuclear phosphoprotein 32 family, member C##AK289711|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##NM_001166373|MARCH1|55016|membrane-associated ring finger (C3HC4) 1##AK056221|C4orf39|152756|chromosome 4 open reading frame 39##NM_153027|C4orf39|152756|chromosome 4 open reading frame 39	0.999948	0.0	denovo_WM_7:34:0.721
chr5	100164490	100164649	reg1016226.p1	4.099	+	AF529367 TSC_hg19_v1_chr5_+_99871306	-293299	+	TSC_hg19_v1_chr5_+_99871055 AY359108 AK289539 BC027332 NM_198507	-293496	+	BC054860 BC117134 NM_001270 AF006513	-1902341	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	74359	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	1467539	-	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	1670064	-	AF529367|FAM174A|345757|family with sequence similarity 174, member A##AY359108|FAM174A|345757|family with sequence similarity 174, member A##AK289539|FAM174A|345757|family with sequence similarity 174, member A##BC027332|FAM174A|345757|family with sequence similarity 174, member A##NM_198507|FAM174A|345757|family with sequence similarity 174, member A##BC054860|CHD1|1105|chromodomain helicase DNA binding protein 1##BC117134|CHD1|1105|chromodomain helicase DNA binding protein 1##NM_001270|CHD1|1105|chromodomain helicase DNA binding protein 1##AF006513|CHD1|1105|chromodomain helicase DNA binding protein 1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1	0.0	0.0	
chr5	149867176	149867324	reg1003058.p2	4.099	+	TSC_hg19_v1_chr5_+_149865341 AB209107	-1811	+	TSC_hg19_v1_chr5_-_149829301 BC003401 BC001126 BC006784 BC110792 AK312179 BC091474 NM_001025070 NM_001025071 NM_005617	-37959	-	TSC_hg19_v1_chr5_-_149829249 BC020515	-38006	-	AK292448 NM_001543 U36600	20463	+	TSC_hg19_v1_chr5_+_149980641 AL831818 NM_001166208	113392	+	AK127049 NM_001166209	129955	+	AB209107|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##BC003401|RPS14|6208|ribosomal protein S14##BC001126|RPS14|6208|ribosomal protein S14##BC006784|RPS14|6208|ribosomal protein S14##BC110792|RPS14|6208|ribosomal protein S14##AK312179|RPS14|6208|ribosomal protein S14##BC091474|RPS14|6208|ribosomal protein S14##NM_001025070|RPS14|6208|ribosomal protein S14##NM_001025071|RPS14|6208|ribosomal protein S14##NM_005617|RPS14|6208|ribosomal protein S14##BC020515|RPS14|6208|ribosomal protein S14##AK292448|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##NM_001543|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##U36600|NDST1|3340|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1##AL831818|SYNPO|11346|synaptopodin##NM_001166208|SYNPO|11346|synaptopodin##AK127049|SYNPO|11346|synaptopodin##NM_001166209|SYNPO|11346|synaptopodin	0.0	0.0	
chr1	117474092	117474213	reg1008182.p2	4.098	+	TSC_hg19_v1_chr1_+_117452678 AK074637 AB037857 BC152454 NM_020440 BC098142 BC139718 BC063317 BC114520	-21510	+	AK313614 AK301154 AK223393 NM_001767 AK303367 M16336 BC033583 M14362 M16445 AB590327 DQ890953 DQ894115 AK310676	-177045	+	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	-263769	-	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	70253	+	AK291017 TSC_hg19_v1_chr1_+_117602939	128772	+	TSC_hg19_v1_chr1_+_117602948 AF073771 NM_003594 AF080255 BC015341 BC030058	128802	+	AK074637|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AB037857|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC152454|PTGFRN|5738|prostaglandin F2 receptor negative regulator##NM_020440|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC098142|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC139718|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC063317|PTGFRN|5738|prostaglandin F2 receptor negative regulator##BC114520|PTGFRN|5738|prostaglandin F2 receptor negative regulator##AK313614|CD2|914|CD2 molecule##AK301154|CD2|914|CD2 molecule##AK223393|CD2|914|CD2 molecule##NM_001767|CD2|914|CD2 molecule##AK303367|CD2|914|CD2 molecule##M16336|CD2|914|CD2 molecule##BC033583|CD2|914|CD2 molecule##M14362|CD2|914|CD2 molecule##M16445|CD2|914|CD2 molecule##DQ890953|CD2|914|CD2 molecule##DQ894115|CD2|914|CD2 molecule##AK310676|CD2|914|CD2 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule##AK291017|TTF2|8458|transcription termination factor, RNA polymerase II##AF073771|TTF2|8458|transcription termination factor, RNA polymerase II##NM_003594|TTF2|8458|transcription termination factor, RNA polymerase II##AF080255|TTF2|8458|transcription termination factor, RNA polymerase II##BC015341|TTF2|8458|transcription termination factor, RNA polymerase II##BC030058|TTF2|8458|transcription termination factor, RNA polymerase II	0.995173	0.0	denovo_WM_7:-25:0.690
chr12	123921143	123921290	reg1016529.p1	4.098	+	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	-204	-	AY064546 TSC_hg19_v1_chr12_+_123873657	-47587	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	-52493	+	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	25	-	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	21487	+	BC093671 BC111955 NM_180699	23169	+	DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC093671|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC111955|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##NM_180699|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)	0.0	0.0	
chr1	90962640	90962726	reg1008869.p2	4.098	+	TSC_hg19_v1_chr1_+_90460726 NM_182975 NM_182976 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073	-501967	+	BC009486 TSC_hg19_v1_chr1_+_90287584	-675119	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	-675225	+	BC126439 BC126441 AY338397 NM_020063	220102	-	BC050656 TSC_hg19_v1_chr1_-_91487020 AK024026 NM_016620	524355	-	TSC_hg19_v1_chr1_-_91487583 BC041138 AK291520	524880	-	NM_182975|ZNF326|284695|zinc finger protein 326##NM_182976|ZNF326|284695|zinc finger protein 326##BC052645|ZNF326|284695|zinc finger protein 326##BC061521|ZNF326|284695|zinc finger protein 326##BC038454|ZNF326|284695|zinc finger protein 326##BC090866|ZNF326|284695|zinc finger protein 326##AK000410|ZNF326|284695|zinc finger protein 326##BC053888|ZNF326|284695|zinc finger protein 326##BC014899|ZNF326|284695|zinc finger protein 326##BC070341|ZNF326|284695|zinc finger protein 326##BC013102|ZNF326|284695|zinc finger protein 326##AK303707|ZNF326|284695|zinc finger protein 326##AK297073|ZNF326|284695|zinc finger protein 326##BC009486|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC126439|BARHL2|343472|BarH-like homeobox 2##BC126441|BARHL2|343472|BarH-like homeobox 2##AY338397|BARHL2|343472|BarH-like homeobox 2##NM_020063|BARHL2|343472|BarH-like homeobox 2##BC050656|ZNF644|84146|zinc finger protein 644##AK024026|ZNF644|84146|zinc finger protein 644##NM_016620|ZNF644|84146|zinc finger protein 644##BC041138|ZNF644|84146|zinc finger protein 644##AK291520|ZNF644|84146|zinc finger protein 644	2.951391	0.0	denovo_WM_7:-46:0.459	denovo_WM_7:-47:0.235	denovo_WM_7:-61:0.277	denovo_WM_7:-62:0.338	denovo_WM_7:-63:0.253	denovo_WM_7:-77:0.276	denovo_WM_7:-78:0.512
chr19	38397613	38397793	reg1001626.p2	4.098	+	AK302913 AY026504 AK128826 NM_031951	-429	-	TSC_hg19_v1_chr19_+_38308124 AK092337	-89564	+	TSC_hg19_v1_chr19_+_38307973 AK309685	-89694	+	TSC_hg19_v1_chr19_+_38397847 NM_015073	154	+	TSC_hg19_v1_chr19_+_38397906 BC150620 BC036863	209	+	AB463560 GQ358728 BC125152 BC125153 U43843 AK308563 NM_001135155 NM_004647	317132	-	AK302913|WDR87|83889|WD repeat domain 87##AY026504|WDR87|83889|WD repeat domain 87##AK128826|WDR87|83889|WD repeat domain 87##NM_031951|WDR87|83889|WD repeat domain 87##AK092337|LOC644554|644554|uncharacterized LOC644554##AK309685|LOC644554|644554|uncharacterized LOC644554##NM_015073|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC150620|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##BC036863|SIPA1L3|23094|signal-induced proliferation-associated 1 like 3##GQ358728|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125152|DPF1|8193|D4, zinc and double PHD fingers family 1##BC125153|DPF1|8193|D4, zinc and double PHD fingers family 1##U43843|DPF1|8193|D4, zinc and double PHD fingers family 1##AK308563|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_001135155|DPF1|8193|D4, zinc and double PHD fingers family 1##NM_004647|DPF1|8193|D4, zinc and double PHD fingers family 1	0.0	0.0	
chr3	194026990	194027148	reg1011677.p1	4.098	+	TSC_hg19_v1_chr3_+_193853938 AK300482 BC039152	-173114	+	NM_005524 TSC_hg19_v1_chr3_+_193853936 AK000415	-173136	+	TSC_hg19_v1_chr3_+_193311166 AB385350	-715904	+	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	45005	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	63398	-	NM_004488	92925	-	AK300482|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC039152|HES1|3280|hairy and enhancer of split 1, (Drosophila)##NM_005524|HES1|3280|hairy and enhancer of split 1, (Drosophila)##AK000415|HES1|3280|hairy and enhancer of split 1, (Drosophila)##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##NM_004488|GP5|2814|glycoprotein V (platelet)	0.99178	0.0	denovo_WM_7:14:0.822
chr5	142889429	142889593	reg1013522.p1	4.098	+	NM_001018074 NM_001018075 NM_001018077	-74435	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-105345	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-105479	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	302247	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	660624	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	660665	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr7	23495839	23495945	reg1011262.p1	4.098	+	TSC_hg19_v1_chr7_+_23338957 BC012331 NM_138446 AK127742 AK316559	-156927	+	AF322909 TSC_hg19_v1_chr7_+_23286426 BC025297 BC011595 CU679974 CU689536 AB528457 DQ892084 DQ895277 BT007074	-209444	+	TSC_hg19_v1_chr7_+_23286407 AJ505015	-209487	+	TSC_hg19_v1_chr7_-_23509637 AB529064 CU688032	13787	-	BC065269 BC019258 BC051296 U76705 U97188 TSC_hg19_v1_chr7_-_23510015 AF117108 NM_006547	14106	-	TSC_hg19_v1_chr7_+_23530136 BC026177	34275	+	BC012331|C7orf30|115416|chromosome 7 open reading frame 30##NM_138446|C7orf30|115416|chromosome 7 open reading frame 30##AK127742|C7orf30|115416|chromosome 7 open reading frame 30##AK316559|C7orf30|115416|chromosome 7 open reading frame 30##AF322909|GPNMB|10457|glycoprotein (transmembrane) nmb##BC025297|GPNMB|10457|glycoprotein (transmembrane) nmb##BC011595|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ892084|GPNMB|10457|glycoprotein (transmembrane) nmb##DQ895277|GPNMB|10457|glycoprotein (transmembrane) nmb##BT007074|GPNMB|10457|glycoprotein (transmembrane) nmb##AJ505015|GPNMB|10457|glycoprotein (transmembrane) nmb##BC065269|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC019258|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC051296|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U76705|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##U97188|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##AF117108|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##NM_006547|IGF2BP3|10643|insulin-like growth factor 2 mRNA binding protein 3##BC026177|RPS2P32|256355|ribosomal protein S2 pseudogene 32	1.758294	0.0	denovo_WM_7:6:0.418	denovo_WM_7:-46:0.819
chr1	173376746	173376840	reg1007951.p2	4.097	+	CR542033 D90224 X79929 NM_003326	-200401	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	-202140	-	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	-356737	-	TSC_hg19_v1_chr1_-_173446300 AK127238	69515	-	TSC_hg19_v1_chr1_+_173446473 AK300680	69680	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	69734	+	CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##AK300680|PRDX6|9588|peroxiredoxin 6##BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6	0.999643	0.0	
chr14	62128216	62128365	reg1014035.p2	4.097	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-339763	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-379768	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-380096	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	33900	+	FJ790247 NM_001243084	36049	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	100829	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.058714	0.0	
chr16	57322471	57322603	reg1013237.p2	4.097	+	TSC_hg19_v1_chr16_-_57318585 AK130584 AK313910 NM_015993	-3958	-	CU678172 BC002760 TSC_hg19_v1_chr16_-_57318556 AK289599 AF137386	-4026	-	TSC_hg19_v1_chr16_+_57279154 AK075050 NM_012106 BC003087 AK311018 AK298758	-43404	+	NM_002990 AK311970 U83171 U83239 BC027952 CU693342 AB590299 DQ890922 DQ893311 DQ894072 DQ896625 EU176526	70173	+	AK222692 TSC_hg19_v1_chr16_+_57406382	83848	+	TSC_hg19_v1_chr16_+_57406401 AK223351 AK313806 U84487 U91835 BC001163 BC016164 NM_002996 AB590256 DQ890704 DQ891871 DQ893888 DQ895059 CU674588 CR457426	83902	+	AK130584|PLLP|51090|plasmolipin##AK313910|PLLP|51090|plasmolipin##NM_015993|PLLP|51090|plasmolipin##BC002760|PLLP|51090|plasmolipin##AK289599|PLLP|51090|plasmolipin##AF137386|PLLP|51090|plasmolipin##AK075050|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_012106|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##BC003087|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK311018|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##AK298758|ARL2BP|23568|ADP-ribosylation factor-like 2 binding protein##NM_002990|CCL22|6367|chemokine (C-C motif) ligand 22##AK311970|CCL22|6367|chemokine (C-C motif) ligand 22##U83171|CCL22|6367|chemokine (C-C motif) ligand 22##U83239|CCL22|6367|chemokine (C-C motif) ligand 22##BC027952|CCL22|6367|chemokine (C-C motif) ligand 22##DQ890922|CCL22|6367|chemokine (C-C motif) ligand 22##DQ893311|CCL22|6367|chemokine (C-C motif) ligand 22##DQ894072|CCL22|6367|chemokine (C-C motif) ligand 22##DQ896625|CCL22|6367|chemokine (C-C motif) ligand 22##EU176526|CCL22|6367|chemokine (C-C motif) ligand 22##AK222692|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK223351|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##AK313806|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U84487|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##U91835|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC001163|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##BC016164|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##NM_002996|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ890704|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ891871|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ893888|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##DQ895059|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1##CR457426|CX3CL1|6376|chemokine (C-X3-C motif) ligand 1	1.987028	0.0	denovo_WM_7:-71:0.457	denovo_WM_7:-72:0.457	denovo_WM_7:98:0.584	denovo_WM_7:99:0.312
chr1	70975967	70976058	reg1015097.p1	4.097	+	TSC_hg19_v1_chr1_+_70876950 NM_001190463 NM_001902 NM_153742 AK310269 AK303946 AK223376 BC015807 S52028 S52784 EU832313 EU832398 BT006882	-99032	+	TSC_hg19_v1_chr1_+_70820493 NM_001031693 NM_001036645 NM_001036646 AF126164 BC010922 AF126163	-155435	+	TSC_hg19_v1_chr1_-_70820406 BC016937 BC028840 AL136717 NM_030816	-155607	-	AB451481 AY387856 AY429108 CU692894 BC118578 BC118659 U13214 U13215 U13216 U13217 U13218 AK290634 L26976 AK315825 L27490 S69326 X83857 X83858 X83859 X83860 X83861 X83862 X83863 L27488 L27489 S69200 D38297 D38298 D38299 D38300 D38301 D86097 D86098 NM_001126044 NM_198714 NM_198715 NM_198716 NM_198717 NM_198718 NM_198719 TSC_hg19_v1_chr1_-_71513500 BC024229	537367	-	CU691764 EU446929 AB209568 TSC_hg19_v1_chr1_-_71546719 AL136945 AK222858 BC010962 AF065391 AF065392 BC033648 BC039814	570695	-	NM_005455 NM_203350	570959	-	NM_001190463|CTH|1491|cystathionase (cystathionine gamma-lyase)##NM_001902|CTH|1491|cystathionase (cystathionine gamma-lyase)##NM_153742|CTH|1491|cystathionase (cystathionine gamma-lyase)##AK310269|CTH|1491|cystathionase (cystathionine gamma-lyase)##AK303946|CTH|1491|cystathionase (cystathionine gamma-lyase)##AK223376|CTH|1491|cystathionase (cystathionine gamma-lyase)##BC015807|CTH|1491|cystathionase (cystathionine gamma-lyase)##S52028|CTH|1491|cystathionase (cystathionine gamma-lyase)##S52784|CTH|1491|cystathionase (cystathionine gamma-lyase)##EU832313|CTH|1491|cystathionase (cystathionine gamma-lyase)##EU832398|CTH|1491|cystathionase (cystathionine gamma-lyase)##BT006882|CTH|1491|cystathionase (cystathionine gamma-lyase)##NM_001031693|HHLA3|11147|HERV-H LTR-associating 3##NM_001036645|HHLA3|11147|HERV-H LTR-associating 3##NM_001036646|HHLA3|11147|HERV-H LTR-associating 3##AF126164|HHLA3|11147|HERV-H LTR-associating 3##BC010922|HHLA3|11147|HERV-H LTR-associating 3##AF126163|HHLA3|11147|HERV-H LTR-associating 3##BC016937|ANKRD13C|81573|ankyrin repeat domain 13C##BC028840|ANKRD13C|81573|ankyrin repeat domain 13C##AL136717|ANKRD13C|81573|ankyrin repeat domain 13C##NM_030816|ANKRD13C|81573|ankyrin repeat domain 13C##AB451481|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AY387856|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AY429108|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC118578|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC118659|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13214|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13215|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13216|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13217|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13218|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK290634|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L26976|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK315825|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27490|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##S69326|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83857|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83858|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83859|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83860|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83861|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83862|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83863|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27488|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27489|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##S69200|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38297|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38298|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38299|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38300|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38301|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D86097|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D86098|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_001126044|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198714|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198715|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198716|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198717|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198718|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198719|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC024229|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##EU446929|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AB209568|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AL136945|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AK222858|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC010962|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AF065391|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AF065392|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC033648|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC039814|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##NM_005455|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##NM_203350|ZRANB2|9406|zinc finger, RAN-binding domain containing 2	2.121558	0.932166	CTCF.p2:-36:0.932	denovo_WM_7:66:0.475	denovo_WM_7:69:0.387	denovo_WM_7:94:0.386	denovo_WM_7:100:0.378
chr3	27652472	27652594	reg1009438.p2	4.097	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-126603	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-126708	-	AF047033 AF089726 NM_003615	-154289	-	AB031038 BC131712 NM_005442 AB463608 BC037568	111260	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	111668	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	630565	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	0.903902	0.0	denovo_WM_7:-40:0.883
chr1	173778713	173778893	reg1015424.p1	4.096	+	TSC_hg19_v1_chr1_+_173684154 AB026190 BC063418	-94620	+	TSC_hg19_v1_chr1_+_173684116 NM_014458 AK308048 AK300755 AK001430	-94707	+	BC094694 TSC_hg19_v1_chr1_-_173638991 AK127170 BC126353 BC126355 NM_198493	-139817	-	AK055606 BC019022 NM_001171182 TSC_hg19_v1_chr1_-_173793324 BC007071	14494	-	TSC_hg19_v1_chr1_-_173793464 BC007923 BC066658 BC033154	14678	-	NM_001127181 NM_033319	14973	-	AB026190|KLHL20|27252|kelch-like 20 (Drosophila)##BC063418|KLHL20|27252|kelch-like 20 (Drosophila)##NM_014458|KLHL20|27252|kelch-like 20 (Drosophila)##AK308048|KLHL20|27252|kelch-like 20 (Drosophila)##AK300755|KLHL20|27252|kelch-like 20 (Drosophila)##AK001430|KLHL20|27252|kelch-like 20 (Drosophila)##AK127170|ANKRD45|339416|ankyrin repeat domain 45##BC126353|ANKRD45|339416|ankyrin repeat domain 45##BC126355|ANKRD45|339416|ankyrin repeat domain 45##NM_198493|ANKRD45|339416|ankyrin repeat domain 45##AK055606|CENPL|91687|centromere protein L##BC019022|CENPL|91687|centromere protein L##NM_001171182|CENPL|91687|centromere protein L##BC007071|CENPL|91687|centromere protein L##BC007923|CENPL|91687|centromere protein L##BC066658|CENPL|91687|centromere protein L##BC033154|CENPL|91687|centromere protein L##NM_001127181|CENPL|91687|centromere protein L##NM_033319|CENPL|91687|centromere protein L	1.841773	0.0	denovo_WM_7:-40:0.458	denovo_WM_7:-41:0.309	denovo_WM_7:-62:0.767
chr14	56038201	56038381	reg1001679.p2	4.096	+	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	-130994	-	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	-159735	-	NM_152231	-299420	+	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	8525	-	TSC_hg19_v1_chr14_+_56046963 NM_001079521 NM_001079522 NM_004986 NM_182926 BC066337 D13629 AK302797 BC050555 BC058736 Z22551 AY264265 BC112337	8811	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	40458	+	AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_152231|FBXO34|55030|F-box protein 34##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##NM_001079521|KTN1|3895|kinectin 1 (kinesin receptor)##NM_001079522|KTN1|3895|kinectin 1 (kinesin receptor)##NM_004986|KTN1|3895|kinectin 1 (kinesin receptor)##NM_182926|KTN1|3895|kinectin 1 (kinesin receptor)##BC066337|KTN1|3895|kinectin 1 (kinesin receptor)##D13629|KTN1|3895|kinectin 1 (kinesin receptor)##AK302797|KTN1|3895|kinectin 1 (kinesin receptor)##BC050555|KTN1|3895|kinectin 1 (kinesin receptor)##BC058736|KTN1|3895|kinectin 1 (kinesin receptor)##Z22551|KTN1|3895|kinectin 1 (kinesin receptor)##AY264265|KTN1|3895|kinectin 1 (kinesin receptor)##BC112337|KTN1|3895|kinectin 1 (kinesin receptor)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)	0.0	0.0	
chr19	8069644	8069764	reg1003640.p3	4.096	+	TSC_hg19_v1_chr19_-_8008615 AK289634 NM_006351	-61048	-	AF026030 BC000679 AB590328 CU689670 BC033628 TSC_hg19_v1_chr19_-_8008548 DQ891301 DQ894486 AK223062 AK309415 AF041254	-61152	-	TSC_hg19_v1_chr19_-_7991004 BC062702 AK098834 NM_206833	-78688	-	TSC_hg19_v1_chr19_-_8070526 U38175 BC003376 NM_001419	821	-	AK292662 NM_001201359 NM_005624	47941	+	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	48243	+	AK289634|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##NM_006351|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF026030|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC033628|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ891301|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##DQ894486|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK223062|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AK309415|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##AF041254|TIMM44|10469|translocase of inner mitochondrial membrane 44 homolog (yeast)##BC062702|CTXN1|404217|cortexin 1##AK098834|CTXN1|404217|cortexin 1##NM_206833|CTXN1|404217|cortexin 1##U38175|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##BC003376|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##NM_001419|ELAVL1|1994|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25	0.0	0.0	
chr3	44044728	44044840	reg1009943.p1	4.096	+	TSC_hg19_v1_chr3_+_43732466 NM_016006 BC021958 AK313811 AF151816 CU692422 DQ891175 DQ894357	-312363	+	TSC_hg19_v1_chr3_-_43663467 AK131223 AK295969 AK297949 AK096302 NM_001204831 NM_001204832 NM_001204833 NM_001204834 NM_018075	-381271	-	TSC_hg19_v1_chr3_-_43663446 AL832508 AK292368 BC038855	-381346	-	AK093476 AX748152 NM_001145030	238593	+	TSC_hg19_v1_chr3_+_44379620 AK292756 NM_001029840 BC009400	334846	+	TSC_hg19_v1_chr3_+_44379944 AK056593 NM_001029839 NM_173826 BC062587	335163	+	NM_016006|ABHD5|51099|abhydrolase domain containing 5##BC021958|ABHD5|51099|abhydrolase domain containing 5##AK313811|ABHD5|51099|abhydrolase domain containing 5##AF151816|ABHD5|51099|abhydrolase domain containing 5##DQ891175|ABHD5|51099|abhydrolase domain containing 5##DQ894357|ABHD5|51099|abhydrolase domain containing 5##AK131223|ANO10|55129|anoctamin 10##AK295969|ANO10|55129|anoctamin 10##AK297949|ANO10|55129|anoctamin 10##AK096302|ANO10|55129|anoctamin 10##NM_001204831|ANO10|55129|anoctamin 10##NM_001204832|ANO10|55129|anoctamin 10##NM_001204833|ANO10|55129|anoctamin 10##NM_001204834|ANO10|55129|anoctamin 10##NM_018075|ANO10|55129|anoctamin 10##AL832508|ANO10|55129|anoctamin 10##AK292368|ANO10|55129|anoctamin 10##BC038855|ANO10|55129|anoctamin 10##AK093476|C3orf77|375337|chromosome 3 open reading frame 77##NM_001145030|C3orf77|375337|chromosome 3 open reading frame 77##AK292756|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029840|C3orf23|285343|chromosome 3 open reading frame 23##BC009400|C3orf23|285343|chromosome 3 open reading frame 23##AK056593|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029839|C3orf23|285343|chromosome 3 open reading frame 23##NM_173826|C3orf23|285343|chromosome 3 open reading frame 23##BC062587|C3orf23|285343|chromosome 3 open reading frame 23	1.006319	0.0	denovo_WM_7:102:0.853
chr4	160099614	160099723	reg1012865.p1	4.096	+	AK058100 NM_152543	-143336	-	TSC_hg19_v1_chr4_+_159690225 AB040883 AL713802 AB385470	-409383	+	TSC_hg19_v1_chr4_+_159690177 NM_020840	-409490	+	AK294459 NM_014247	89329	+	AB033089 AK315152 BC036502 NM_001128427 NM_001128428 NM_020116	2985483	-	TSC_hg19_v1_chr4_-_164088002 AK097352	3988324	-	AK058100|C4orf45|152940|chromosome 4 open reading frame 45##NM_152543|C4orf45|152940|chromosome 4 open reading frame 45##AB040883|FNIP2|57600|folliculin interacting protein 2##AL713802|FNIP2|57600|folliculin interacting protein 2##NM_020840|FNIP2|57600|folliculin interacting protein 2##AK294459|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##NM_014247|RAPGEF2|9693|Rap guanine nucleotide exchange factor (GEF) 2##AB033089|FSTL5|56884|follistatin-like 5##AK315152|FSTL5|56884|follistatin-like 5##BC036502|FSTL5|56884|follistatin-like 5##NM_001128427|FSTL5|56884|follistatin-like 5##NM_001128428|FSTL5|56884|follistatin-like 5##NM_020116|FSTL5|56884|follistatin-like 5##AK097352|NAF1|92345|nuclear assembly factor 1 homolog (S. cerevisiae)	0.999667	0.0	
chr5	142827025	142827117	reg1010007.p2	4.096	+	NM_001018074 NM_001018075 NM_001018077	-11995	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-42905	-	TSC_hg19_v1_chr5_-_142784036 AK302050 NM_001018076	-43039	-	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	364687	+	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	723064	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	723105	-	NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK302050|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018076|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr10	12256791	12256918	reg1012178.p1	4.095	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-18628	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-18655	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-18672	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	134721	+	TSC_hg19_v1_chr10_+_12391709 BC035745	134863	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	134923	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	1.758038	0.335659	CTCF.p2:3:0.336	denovo_WM_7:-57:0.766	denovo_WM_7:74:0.376	denovo_WM_7:76:0.374
chr1	182395746	182395926	reg1004729.p1	4.095	+	AJ515384 NM_172000	-26086	-	TSC_hg19_v1_chr1_-_182361366 AK122784 NM_001033044 NM_002065	-34496	-	TSC_hg19_v1_chr1_-_182360928 AY947343 BC018992 BC011700 X59834 BC010037 BC011852 Y00387 BC051726 BX537384	-34901	-	NM_001137669 AK302768 BC142944 AL136902	23437	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	162547	-	CU675308 TSC_hg19_v1_chr1_+_182569465	173610	+	AJ515384|TEDDM1|127670|transmembrane epididymal protein 1##NM_172000|TEDDM1|127670|transmembrane epididymal protein 1##AK122784|GLUL|2752|glutamate-ammonia ligase##NM_001033044|GLUL|2752|glutamate-ammonia ligase##NM_002065|GLUL|2752|glutamate-ammonia ligase##AY947343|GLUL|2752|glutamate-ammonia ligase##BC018992|GLUL|2752|glutamate-ammonia ligase##BC011700|GLUL|2752|glutamate-ammonia ligase##X59834|GLUL|2752|glutamate-ammonia ligase##BC010037|GLUL|2752|glutamate-ammonia ligase##BC011852|GLUL|2752|glutamate-ammonia ligase##Y00387|GLUL|2752|glutamate-ammonia ligase##BC051726|GLUL|2752|glutamate-ammonia ligase##BX537384|GLUL|2752|glutamate-ammonia ligase##NM_001137669|RGSL1|353299|regulator of G-protein signaling like 1##AK302768|RGSL1|353299|regulator of G-protein signaling like 1##BC142944|RGSL1|353299|regulator of G-protein signaling like 1##AL136902|RGSL1|353299|regulator of G-protein signaling like 1##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	0.0	0.0	
chr20	49115039	49115148	reg1011003.p2	4.095	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-307463	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-307712	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-307900	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	11783	+	TSC_hg19_v1_chr20_+_49126916 AK316563	11820	+	AK299830 TSC_hg19_v1_chr20_+_49126919	11826	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	0.998852	0.0	denovo_WM_7:34:0.314	denovo_WM_7:35:0.314	denovo_WM_7:36:0.314
chr2	25080916	25080993	reg1012634.p2	4.095	+	NM_001199803 AK027859 TSC_hg19_v1_chr2_+_25016332 NM_024322 BC002870 AK315483	-64683	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	-64716	-	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	-273577	+	HQ258684 AK027857 BC126235 BC144119 AF033861 NM_004036 AK122926	61003	-	AK294726 TSC_hg19_v1_chr2_-_25194607	113591	-	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	113913	-	NM_001199803|CENPO|79172|centromere protein O##AK027859|CENPO|79172|centromere protein O##NM_024322|CENPO|79172|centromere protein O##BC002870|CENPO|79172|centromere protein O##AK315483|CENPO|79172|centromere protein O##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##HQ258684|ADCY3|109|adenylate cyclase 3##AK027857|ADCY3|109|adenylate cyclase 3##BC126235|ADCY3|109|adenylate cyclase 3##BC144119|ADCY3|109|adenylate cyclase 3##AF033861|ADCY3|109|adenylate cyclase 3##NM_004036|ADCY3|109|adenylate cyclase 3##AK122926|ADCY3|109|adenylate cyclase 3##AK294726|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27	0.997788	0.0	
chr11	90322859	90322983	reg1011502.p1	4.094	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-338511	+	AK290231 NM_001144073 NM_012124	-366390	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-366719	-	NM_001008781	1762340	+	BC069163 NM_005959 U25341 AY521019	2379918	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2608066	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.0	0.0	
chr13	36016031	36016137	reg1016065.p1	4.094	+	TSC_hg19_v1_chr13_+_35516429 NM_015678 AF467288	-499626	+	TSC_hg19_v1_chr13_+_34392276 AK296527 BC000149 AK222572 AK312544 L07541 AB528646 DQ890955 DQ894118 BT019668	-1623800	+	NM_002915 NM_181558 TSC_hg19_v1_chr13_+_34392248	-1623857	+	BC028170 AB593021 TSC_hg19_v1_chr13_-_36050827 AB593022 AK313185 AB073388 NM_005584	34712	-	AK294737 NM_001204197 TSC_hg19_v1_chr13_+_36050945 AK315939	34841	+	AK299059 AK311183 AK295777 TSC_hg19_v1_chr13_-_36429805 CR627093 AK308925 AK311434 AK311438 AK311195 NM_001195415 NM_001195416 NM_001195430	413813	-	NM_015678|NBEA|26960|neurobeachin##AF467288|NBEA|26960|neurobeachin##AK296527|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BC000149|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK222572|RFC3|5983|replication factor C (activator 1) 3, 38kDa##AK312544|RFC3|5983|replication factor C (activator 1) 3, 38kDa##L07541|RFC3|5983|replication factor C (activator 1) 3, 38kDa##DQ890955|RFC3|5983|replication factor C (activator 1) 3, 38kDa##DQ894118|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BT019668|RFC3|5983|replication factor C (activator 1) 3, 38kDa##NM_002915|RFC3|5983|replication factor C (activator 1) 3, 38kDa##NM_181558|RFC3|5983|replication factor C (activator 1) 3, 38kDa##BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK294737|NBEA|26960|neurobeachin##NM_001204197|NBEA|26960|neurobeachin##AK315939|NBEA|26960|neurobeachin##AK299059|DCLK1|9201|doublecortin-like kinase 1##AK311183|DCLK1|9201|doublecortin-like kinase 1##AK295777|DCLK1|9201|doublecortin-like kinase 1##CR627093|DCLK1|9201|doublecortin-like kinase 1##AK308925|DCLK1|9201|doublecortin-like kinase 1##AK311434|DCLK1|9201|doublecortin-like kinase 1##AK311438|DCLK1|9201|doublecortin-like kinase 1##AK311195|DCLK1|9201|doublecortin-like kinase 1##NM_001195415|DCLK1|9201|doublecortin-like kinase 1##NM_001195416|DCLK1|9201|doublecortin-like kinase 1##NM_001195430|DCLK1|9201|doublecortin-like kinase 1	0.965423	0.0	denovo_WM_7:-106:0.435	denovo_WM_7:-107:0.435
chr14	93672299	93672391	reg1012113.p1	4.094	+	NM_015676 TSC_hg19_v1_chr14_+_93651379 AL080118 BC030119 NM_001098621	-21002	+	AK315522 TSC_hg19_v1_chr14_-_93651261	-21077	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	-21100	-	NM_175748 AK097477	1063	+	BC065216 BC109390 TSC_hg19_v1_chr14_-_93673411 BC107429 BC021733 NM_032490	1064	-	TSC_hg19_v1_chr14_+_93673600 BC015046 AK315492	1251	+	NM_015676|C14orf109|26175|chromosome 14 open reading frame 109##AL080118|C14orf109|26175|chromosome 14 open reading frame 109##BC030119|C14orf109|26175|chromosome 14 open reading frame 109##NM_001098621|C14orf109|26175|chromosome 14 open reading frame 109##AK315522|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##NM_175748|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AK097477|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##BC065216|C14orf142|84520|chromosome 14 open reading frame 142##BC109390|C14orf142|84520|chromosome 14 open reading frame 142##BC107429|C14orf142|84520|chromosome 14 open reading frame 142##BC021733|C14orf142|84520|chromosome 14 open reading frame 142##NM_032490|C14orf142|84520|chromosome 14 open reading frame 142##BC015046|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)##AK315492|UBR7|55148|ubiquitin protein ligase E3 component n-recognin 7 (putative)	0.991948	0.0	denovo_WM_7:11:0.227	denovo_WM_7:14:0.324
chr17	38071763	38071911	reg1017204.p1	4.094	+	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	-47394	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	-51407	-	AK290115 NM_001242443	-175618	+	AF119884 NM_018530	1955	-	AK000409 AK296607 NM_001042471 NM_001165958 NM_001165959	3035	-	BC054042 BC050710 AF151043 BC000638 BC018837 TSC_hg19_v1_chr17_-_38078103	6169	-	AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B##AK000409|GSDMB|55876|gasdermin B##AK296607|GSDMB|55876|gasdermin B##NM_001042471|GSDMB|55876|gasdermin B##NM_001165958|GSDMB|55876|gasdermin B##NM_001165959|GSDMB|55876|gasdermin B##BC054042|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC050710|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##AF151043|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC000638|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)##BC018837|ORMDL3|94103|ORM1-like 3 (S. cerevisiae)	0.991725	0.0	denovo_WM_7:26:0.331	denovo_WM_7:27:0.331	denovo_WM_7:28:0.331
chr6	85291832	85291960	reg1011013.p1	4.094	+	AB023226 AK308190 BC063632 NM_014895 TSC_hg19_v1_chr6_-_84937334	-354572	-	TSC_hg19_v1_chr6_+_84743459 AK090775 AX746611 NM_138409 BC010003 AK307078 AK292736 BC039855	-548490	+	TSC_hg19_v1_chr6_+_84569438 AB527313 AM393033	-722432	+	TSC_hg19_v1_chr6_-_85472330 AJ010278	180429	-	AK310179 BC040697 TSC_hg19_v1_chr6_-_85473172	181274	-	HQ258462 NM_001080508 BC157841 BC132715	182029	-	AB023226|KIAA1009|22832|KIAA1009##AK308190|KIAA1009|22832|KIAA1009##BC063632|KIAA1009|22832|KIAA1009##NM_014895|KIAA1009|22832|KIAA1009##AK090775|MRAP2|112609|melanocortin 2 receptor accessory protein 2##NM_138409|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC010003|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK307078|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK292736|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC039855|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AM393033|CYB5R4|51167|cytochrome b5 reductase 4##AJ010278|TBX18|9096|T-box 18##AK310179|TBX18|9096|T-box 18##BC040697|TBX18|9096|T-box 18##HQ258462|TBX18|9096|T-box 18##NM_001080508|TBX18|9096|T-box 18##BC157841|TBX18|9096|T-box 18##BC132715|TBX18|9096|T-box 18	0.0	0.0	
chr8	121663691	121663863	reg1011980.p1	4.094	+	TSC_hg19_v1_chr8_+_121457658 AK022122 AK300762 BC013136 NM_022045 EU176294 EU176618	-206101	+	BC021744 NM_014078	-206142	-	TSC_hg19_v1_chr8_-_121457391 AK311924	-206384	-	TSC_hg19_v1_chr8_+_121823539 AK302130	159764	+	TSC_hg19_v1_chr8_-_121823718 AF028828	159984	-	TSC_hg19_v1_chr8_-_121824090 AB590740	160286	-	AK022122|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##AK300762|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC013136|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##NM_022045|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176294|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##EU176618|MTBP|27085|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##AF028828|SNTB1|6641|syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)	0.0	0.0	
chr8	41480547	41480690	reg1003965.p1	4.094	+	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	-44924	+	TSC_hg19_v1_chr8_+_41386779 AK095334 AK313373	-93846	+	NM_032336 AK299207 BC027454 TSC_hg19_v1_chr8_+_41386745 BC005995	-93881	+	AB587362 AK057898 NM_152568	24257	-	AK223578 AK129864 BC007930 BC030957 BC014467 NM_001142445 NM_020478 NM_020480	42145	-	M28880 NM_000037 NM_020475 NM_020476 NM_020477 X16609 TSC_hg19_v1_chr8_-_41655141	174522	-	NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AK095334|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK313373|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##NM_032336|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK299207|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC027454|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC005995|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK057898|NKX6-3|157848|NK6 homeobox 3##NM_152568|NKX6-3|157848|NK6 homeobox 3##AK223578|ANK1|286|ankyrin 1, erythrocytic##AK129864|ANK1|286|ankyrin 1, erythrocytic##BC007930|ANK1|286|ankyrin 1, erythrocytic##BC030957|ANK1|286|ankyrin 1, erythrocytic##BC014467|ANK1|286|ankyrin 1, erythrocytic##NM_001142445|ANK1|286|ankyrin 1, erythrocytic##NM_020478|ANK1|286|ankyrin 1, erythrocytic##NM_020480|ANK1|286|ankyrin 1, erythrocytic##M28880|ANK1|286|ankyrin 1, erythrocytic##NM_000037|ANK1|286|ankyrin 1, erythrocytic##NM_020475|ANK1|286|ankyrin 1, erythrocytic##NM_020476|ANK1|286|ankyrin 1, erythrocytic##NM_020477|ANK1|286|ankyrin 1, erythrocytic##X16609|ANK1|286|ankyrin 1, erythrocytic	0.0	0.049543	
chr11	42862166	42862272	reg1013244.p2	4.093	+	AB046800 NM_020929	-2546556	-	AY358293 TSC_hg19_v1_chr11_-_40314659 BC041374	-2547625	-	AK292664 BC022397 NM_000536 NM_001243785 NM_001243786	-6242417	-	TSC_hg19_v1_chr11_+_43333523 NM_001142930 NM_001142931 NM_001243747 NM_006595	471299	+	TSC_hg19_v1_chr11_+_43333545 AK299288 AK304157 AK294724 Y15906 AF229254 AY311389 U83857 BC017709	471345	+	AK293303 TSC_hg19_v1_chr11_+_43333603 DQ890671 DQ893852 BT007093	471421	+	AB046800|LRRC4C|57689|leucine rich repeat containing 4C##NM_020929|LRRC4C|57689|leucine rich repeat containing 4C##AY358293|LRRC4C|57689|leucine rich repeat containing 4C##BC041374|LRRC4C|57689|leucine rich repeat containing 4C##AK292664|RAG2|5897|recombination activating gene 2##BC022397|RAG2|5897|recombination activating gene 2##NM_000536|RAG2|5897|recombination activating gene 2##NM_001243785|RAG2|5897|recombination activating gene 2##NM_001243786|RAG2|5897|recombination activating gene 2##NM_001142930|API5|8539|apoptosis inhibitor 5##NM_001142931|API5|8539|apoptosis inhibitor 5##NM_001243747|API5|8539|apoptosis inhibitor 5##NM_006595|API5|8539|apoptosis inhibitor 5##AK299288|API5|8539|apoptosis inhibitor 5##AK304157|API5|8539|apoptosis inhibitor 5##AK294724|API5|8539|apoptosis inhibitor 5##Y15906|API5|8539|apoptosis inhibitor 5##AF229254|API5|8539|apoptosis inhibitor 5##AY311389|API5|8539|apoptosis inhibitor 5##U83857|API5|8539|apoptosis inhibitor 5##BC017709|API5|8539|apoptosis inhibitor 5##AK293303|API5|8539|apoptosis inhibitor 5##DQ890671|API5|8539|apoptosis inhibitor 5##DQ893852|API5|8539|apoptosis inhibitor 5##BT007093|API5|8539|apoptosis inhibitor 5	0.0	0.0	
chr1	25071369	25071467	reg1012517.p1	4.093	+	TSC_hg19_v1_chr1_+_24969795 AF048977 BC017315	-101614	+	TSC_hg19_v1_chr1_+_24969792 AK302498	-101639	+	TSC_hg19_v1_chr1_+_24969763 BC011019 BC036187	-101680	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	413	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	515	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	587	+	AF048977|SRRM1|10250|serine/arginine repetitive matrix 1##BC017315|SRRM1|10250|serine/arginine repetitive matrix 1##AK302498|SRRM1|10250|serine/arginine repetitive matrix 1##BC011019|SRRM1|10250|serine/arginine repetitive matrix 1##BC036187|SRRM1|10250|serine/arginine repetitive matrix 1##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4	0.0	0.0	
chr18	13612424	13612526	reg1015753.p1	4.093	+	NM_001003674 NM_001003675	-811	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-393690	+	TSC_hg19_v1_chr18_+_12991360 AK096548 NM_032142	-621130	+	AF009426 AF009427 NM_004338 NM_181483	8391	+	TSC_hg19_v1_chr18_-_13726549 AK055618	114031	-	TSC_hg19_v1_chr18_-_13726582 AK309506 NM_001098801 NM_152352	114111	-	NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK096548|CEP192|55125|centrosomal protein 192kDa##NM_032142|CEP192|55125|centrosomal protein 192kDa##AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A##AK309506|FAM210A|125228|family with sequence similarity 210, member A##NM_001098801|FAM210A|125228|family with sequence similarity 210, member A##NM_152352|FAM210A|125228|family with sequence similarity 210, member A	0.0	0.0	
chr2	136874022	136874121	reg1000360.p2	4.093	+	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-273	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-130855	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	-130942	-	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	1605	-	TSC_hg19_v1_chr2_+_137523114 AK299929	649045	+	NM_001080427	874390	+	NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B	0.0	0.0	
chr2	86471213	86471339	reg1011286.p1	4.093	+	NM_016622 NM_145644 TSC_hg19_v1_chr2_+_86426604 BC020651 AK074352 AK314555 AK314577 AF208849 AL832982 CU676602	-44692	+	NM_001100169 NM_001100170 NM_006839	-48384	-	TSC_hg19_v1_chr2_-_86422614 BX537369 L42572	-48621	-	AY562239 CR457301 CU687956 AK297201 TSC_hg19_v1_chr2_-_86564750 BC064846 AK294300 AK297359 AK297373 AK299334 AK023172 NM_001164731 NM_001164732 NM_022912	93457	-	AK297287 NM_001164730	93929	-	NM_018433	196994	+	NM_016622|MRPL35|51318|mitochondrial ribosomal protein L35##NM_145644|MRPL35|51318|mitochondrial ribosomal protein L35##BC020651|MRPL35|51318|mitochondrial ribosomal protein L35##AK074352|MRPL35|51318|mitochondrial ribosomal protein L35##AK314555|MRPL35|51318|mitochondrial ribosomal protein L35##AK314577|MRPL35|51318|mitochondrial ribosomal protein L35##AF208849|MRPL35|51318|mitochondrial ribosomal protein L35##AL832982|MRPL35|51318|mitochondrial ribosomal protein L35##NM_001100169|IMMT|10989|inner membrane protein, mitochondrial##NM_001100170|IMMT|10989|inner membrane protein, mitochondrial##NM_006839|IMMT|10989|inner membrane protein, mitochondrial##BX537369|IMMT|10989|inner membrane protein, mitochondrial##L42572|IMMT|10989|inner membrane protein, mitochondrial##AY562239|REEP1|65055|receptor accessory protein 1##CR457301|REEP1|65055|receptor accessory protein 1##AK297201|REEP1|65055|receptor accessory protein 1##BC064846|REEP1|65055|receptor accessory protein 1##AK294300|REEP1|65055|receptor accessory protein 1##AK297359|REEP1|65055|receptor accessory protein 1##AK297373|REEP1|65055|receptor accessory protein 1##AK299334|REEP1|65055|receptor accessory protein 1##AK023172|REEP1|65055|receptor accessory protein 1##NM_001164731|REEP1|65055|receptor accessory protein 1##NM_001164732|REEP1|65055|receptor accessory protein 1##NM_022912|REEP1|65055|receptor accessory protein 1##AK297287|REEP1|65055|receptor accessory protein 1##NM_001164730|REEP1|65055|receptor accessory protein 1##NM_018433|KDM3A|55818|lysine (K)-specific demethylase 3A	0.0	0.0	
chr8	135576141	135576310	reg1006935.p1	4.093	+	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	-992128	-	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-1266728	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-1372895	+	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	132569	-	TSC_hg19_v1_chr8_-_135725053 AB463359	148854	-	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	149049	-	BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing	0.0	0.0	
chr8	137110234	137110369	reg1008210.p1	4.093	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-640100	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-640643	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1385027	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	2398805	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2815943	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3604981	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.996192	0.0	
chr10	54784956	54785080	reg1015014.p1	4.092	+	AY826184 AB527950 AF360991 BC096179 BC096180 BC096181 BC096182 BC069338 NM_000242 X15422	-253592	-	TSC_hg19_v1_chr10_+_54074042 NM_012242 AK314902 BC001539 AY359005 AF127563 AF177394 AB528499 CU674754 DQ892222 DQ895421	-710903	+	CU688440 TSC_hg19_v1_chr10_-_53459366 AY130299 BC028239 AK222574 AL136747 AK314318 NM_015235	-1325671	-	AL834134 AY029205 AY029237 EU718480 EU718481 EU718482 NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_033056	1775980	-	NM_001190478 TSC_hg19_v1_chr10_+_57358800	2573756	+	TSC_hg19_v1_chr10_-_58121017 AF067656 AK225509	3335996	-	AY826184|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##AF360991|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096179|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096180|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096181|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096182|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC069338|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##NM_000242|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##X15422|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##NM_012242|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AK314902|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##BC001539|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AY359005|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AF127563|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AF177394|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##DQ892222|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##DQ895421|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AY130299|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##BC028239|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AK222574|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AL136747|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AK314318|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##NM_015235|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AL834134|PCDH15|65217|protocadherin-related 15##AY029205|PCDH15|65217|protocadherin-related 15##AY029237|PCDH15|65217|protocadherin-related 15##EU718480|PCDH15|65217|protocadherin-related 15##EU718481|PCDH15|65217|protocadherin-related 15##EU718482|PCDH15|65217|protocadherin-related 15##NM_001142763|PCDH15|65217|protocadherin-related 15##NM_001142764|PCDH15|65217|protocadherin-related 15##NM_001142765|PCDH15|65217|protocadherin-related 15##NM_001142766|PCDH15|65217|protocadherin-related 15##NM_001142767|PCDH15|65217|protocadherin-related 15##NM_001142768|PCDH15|65217|protocadherin-related 15##NM_001142769|PCDH15|65217|protocadherin-related 15##NM_001142770|PCDH15|65217|protocadherin-related 15##NM_001142771|PCDH15|65217|protocadherin-related 15##NM_001142772|PCDH15|65217|protocadherin-related 15##NM_001142773|PCDH15|65217|protocadherin-related 15##NM_033056|PCDH15|65217|protocadherin-related 15##NM_001190478|MTRNR2L5|100463289|MT-RNR2-like 5##AF067656|ZWINT|11130|ZW10 interactor##AK225509|ZWINT|11130|ZW10 interactor	0.0	0.0	
chr13	67461412	67461538	reg1014261.p1	4.092	+	AK289924 NM_022843	-5471821	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-5472222	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-6489996	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	343029	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	3221066	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	4978784	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.240234	0.0	denovo_WM_7:43:0.240
chr15	40080425	40080539	reg1015064.p1	4.092	+	AK091251 TSC_hg19_v1_chr15_+_40075106	-5376	+	AK093308 AX748045 BC045191 NM_152597	-5454	-	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	-207153	+	CU688250 TSC_hg19_v1_chr15_-_40212342	131803	-	BC067106 TSC_hg19_v1_chr15_-_40212465	132006	-	TSC_hg19_v1_chr15_-_40213138 D38449 NM_007223	132645	-	AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##BC067106|GPR176|11245|G protein-coupled receptor 176##D38449|GPR176|11245|G protein-coupled receptor 176##NM_007223|GPR176|11245|G protein-coupled receptor 176	0.0	0.0	
chr17	59894053	59894170	reg1013636.p1	4.092	+	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	-225549	-	AF188703 NM_018488 BC136403 BC144062 AB464284	-360283	+	BC142620 TSC_hg19_v1_chr17_+_59529788	-364325	+	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	46683	-	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	111231	-	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	248516	-	BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##AF188703|TBX4|9496|T-box 4##NM_018488|TBX4|9496|T-box 4##BC136403|TBX4|9496|T-box 4##BC144062|TBX4|9496|T-box 4##BC142620|TBX4|9496|T-box 4##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13	0.442391	0.0	denovo_WM_7:1:0.329
chr20	5977604	5977734	reg1008542.p1	4.092	+	AJ439063 NM_032485 NM_182802 AK297806 BC101054 BC101055 BC101056 BC101057 BC080656 AY158211 BC005170 AK314654	-46186	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	-46546	-	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	-85543	+	TSC_hg19_v1_chr20_+_5986738 NM_019095	8991	+	TSC_hg19_v1_chr20_+_5986768 BC069010 AB463464 DQ386730	9157	+	TSC_hg19_v1_chr20_+_5986970 AL832419	9300	+	AJ439063|MCM8|84515|minichromosome maintenance complex component 8##NM_032485|MCM8|84515|minichromosome maintenance complex component 8##NM_182802|MCM8|84515|minichromosome maintenance complex component 8##AK297806|MCM8|84515|minichromosome maintenance complex component 8##BC101054|MCM8|84515|minichromosome maintenance complex component 8##BC101055|MCM8|84515|minichromosome maintenance complex component 8##BC101056|MCM8|84515|minichromosome maintenance complex component 8##BC101057|MCM8|84515|minichromosome maintenance complex component 8##BC080656|MCM8|84515|minichromosome maintenance complex component 8##AY158211|MCM8|84515|minichromosome maintenance complex component 8##BC005170|MCM8|84515|minichromosome maintenance complex component 8##AK314654|MCM8|84515|minichromosome maintenance complex component 8##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##NM_019095|CRLS1|54675|cardiolipin synthase 1##BC069010|CRLS1|54675|cardiolipin synthase 1##DQ386730|CRLS1|54675|cardiolipin synthase 1##AL832419|CRLS1|54675|cardiolipin synthase 1	0.0	0.0	
chr2	10472032	10472167	reg1015258.p1	4.092	+	AK000596 NM_134421	-28274	+	TSC_hg19_v1_chr2_+_10443043 BC017482 NM_002149 BC009846 BC017028	-29050	+	BC093999 BC094001 NM_182626	-190120	+	D28365 BC014562 BC025296 X55362 TSC_hg19_v1_chr2_-_10588440	116261	-	TSC_hg19_v1_chr2_-_10588453 AK301956 NM_002539	116353	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	357945	-	AK000596|HPCAL1|3241|hippocalcin-like 1##NM_134421|HPCAL1|3241|hippocalcin-like 1##BC017482|HPCAL1|3241|hippocalcin-like 1##NM_002149|HPCAL1|3241|hippocalcin-like 1##BC009846|HPCAL1|3241|hippocalcin-like 1##BC017028|HPCAL1|3241|hippocalcin-like 1##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48##D28365|ODC1|4953|ornithine decarboxylase 1##BC014562|ODC1|4953|ornithine decarboxylase 1##BC025296|ODC1|4953|ornithine decarboxylase 1##X55362|ODC1|4953|ornithine decarboxylase 1##AK301956|ODC1|4953|ornithine decarboxylase 1##NM_002539|ODC1|4953|ornithine decarboxylase 1##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10	0.0	0.0	
chr8	102658679	102658787	reg1015566.p1	4.092	+	TSC_hg19_v1_chr8_+_102504840 AK023844 AK292853 BC069618 BC069633 BC069638 BC129822 BC129823	-153823	+	TSC_hg19_v1_chr8_+_102504667 NM_024915 AK296817 AK310221	-154068	+	TSC_hg19_v1_chr8_-_102217929 NM_001042510 NM_016096	-440779	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	144450	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	144467	-	NM_032041	144705	-	AK023844|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK292853|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069618|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069633|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC069638|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129822|GRHL2|79977|grainyhead-like 2 (Drosophila)##BC129823|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_024915|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK296817|GRHL2|79977|grainyhead-like 2 (Drosophila)##AK310221|GRHL2|79977|grainyhead-like 2 (Drosophila)##NM_001042510|ZNF706|51123|zinc finger protein 706##NM_016096|ZNF706|51123|zinc finger protein 706##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##NM_032041|NCALD|83988|neurocalcin delta	0.0	0.167934	
chr8	26168102	26168282	reg1014283.p2	4.092	+	AK303981 NM_001177591	-17461	+	TSC_hg19_v1_chr8_+_26149092 M64929 AY189686	-18998	+	AK314823 TSC_hg19_v1_chr8_+_26149043 BC041071	-19143	+	NM_004331 TSC_hg19_v1_chr8_+_26240583 AF452712 AK300286 AL132665 BC009603 AF067396 AF079221 AF060922 AK307195 AK300727 AF536326 AB004788 AK290213 BC001559 AB527613 BT019500 BT019501 CR456701 EU831983 EU832076	72392	+	BC047515 TSC_hg19_v1_chr8_-_26371389 BC036489 AK055325 NM_007257	203242	-	TSC_hg19_v1_chr8_+_26371546 AK092377 NM_001197293 AB370195	203436	+	AK303981|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##NM_001177591|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##M64929|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AY189686|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##AK314823|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##BC041071|PPP2R2A|5520|protein phosphatase 2, regulatory subunit B, alpha##NM_004331|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF452712|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300286|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AL132665|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC009603|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF067396|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF079221|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF060922|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK307195|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK300727|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AF536326|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AB004788|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##AK290213|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC001559|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019500|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BT019501|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##CR456701|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU831983|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##EU832076|BNIP3L|665|BCL2/adenovirus E1B 19kDa interacting protein 3-like##BC047515|PNMA2|10687|paraneoplastic antigen MA2##BC036489|PNMA2|10687|paraneoplastic antigen MA2##AK055325|PNMA2|10687|paraneoplastic antigen MA2##NM_007257|PNMA2|10687|paraneoplastic antigen MA2##AK092377|DPYSL2|1808|dihydropyrimidinase-like 2##NM_001197293|DPYSL2|1808|dihydropyrimidinase-like 2##AB370195|DPYSL2|1808|dihydropyrimidinase-like 2	0.990574	0.0	denovo_WM_7:0:0.807
chr11	118560988	118561147	reg1010129.p2	4.091	+	AK223140 AK309565 AK091981 AK223143 AX747289 BC109206 NM_007180 AB000824	-10700	-	NM_001144758 NM_001144759 TSC_hg19_v1_chr11_+_118478332 CR749783 BC098586 AB014538 AK295819 AL832373 AK074070 AK125783	-82690	+	AB094090 NM_015157	-83855	+	BC065007 TSC_hg19_v1_chr11_-_118661679 AK313244	100566	-	TSC_hg19_v1_chr11_-_118661835 D17532	100769	-	BC039826 TSC_hg19_v1_chr11_-_118661855	100788	-	AK223140|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK309565|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK091981|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK223143|TREH|11181|trehalase (brush-border membrane glycoprotein)##BC109206|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_007180|TREH|11181|trehalase (brush-border membrane glycoprotein)##AB000824|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_001144758|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_001144759|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##CR749783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC098586|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB014538|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK295819|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AL832373|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK074070|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK125783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC065007|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK313244|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##D17532|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC039826|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.0	0.060746	
chr16	11988070	11988161	reg1009071.p2	4.091	+	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	-42711	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	-97000	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	-97064	-	TSC_hg19_v1_chr16_-_12009569 AB590486	21488	-	BC009503 TSC_hg19_v1_chr16_-_12009763 AK095483	21633	-	TSC_hg19_v1_chr16_-_12009775 BC008391	21660	-	AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC009503|GSPT1|2935|G1 to S phase transition 1##AK095483|GSPT1|2935|G1 to S phase transition 1##BC008391|GSPT1|2935|G1 to S phase transition 1	1.995084	0.0	
chr17	75241283	75241417	reg1013277.p2	4.091	+	AK293206 NM_001144001	-60056	+	TSC_hg19_v1_chr17_+_75137104 AK290913 BC142979 BC136523 BC136525	-104215	+	TSC_hg19_v1_chr17_+_75137073 NM_001039573 NM_001143998 NM_001143999 NM_003003 AB208811 D67029 BX537448	-104316	+	NM_001113491 AF189713 TSC_hg19_v1_chr17_+_75277583 AJ312323 AK300270 AK300268 BC054004	36192	+	AK290368 NM_001113492 TSC_hg19_v1_chr17_+_75283980	42629	+	TSC_hg19_v1_chr17_+_75315629 AJ312321 NM_006640	74260	+	AK293206|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001144001|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##AK290913|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BC142979|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BC136523|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BC136525|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001039573|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001143998|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001143999|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_003003|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##AB208811|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##D67029|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##BX537448|SEC14L1|6397|SEC14-like 1 (S. cerevisiae)##NM_001113491|SEPT9|10801|septin 9##AF189713|SEPT9|10801|septin 9##AJ312323|SEPT9|10801|septin 9##AK300270|SEPT9|10801|septin 9##AK300268|SEPT9|10801|septin 9##BC054004|SEPT9|10801|septin 9##AK290368|SEPT9|10801|septin 9##NM_001113492|SEPT9|10801|septin 9##AJ312321|SEPT9|10801|septin 9##NM_006640|SEPT9|10801|septin 9	0.0	0.0	
chr19	54994212	54994327	reg1016178.p1	4.091	+	BC065910 TSC_hg19_v1_chr19_-_54984370 BC024327 NM_145057	-9888	-	BC015921 NM_198988	-19376	-	AL833879 TSC_hg19_v1_chr19_+_54965768	-28557	+	NM_002288 NM_021270 BC057790 AF013250 BC069366 CU686777 HQ448404 EF174570	19804	+	AK310088 TSC_hg19_v1_chr19_+_55084486	90216	+	TSC_hg19_v1_chr19_+_55085256 NM_001130917 NM_006866 U82275 AK130170	90983	+	BC065910|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC024327|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##NM_145057|CDC42EP5|148170|CDC42 effector protein (Rho GTPase binding) 5##BC015921|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_198988|LENG9|94059|leukocyte receptor cluster (LRC) member 9##NM_002288|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##NM_021270|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC057790|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AF013250|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##BC069366|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##HQ448404|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##EF174570|LAIR2|3904|leukocyte-associated immunoglobulin-like receptor 2##AK310088|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_001130917|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##NM_006866|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##U82275|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2##AK130170|LILRA2|11027|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2	0.037374	0.0	
chr2	160543564	160543678	reg1008427.p1	4.091	+	BX647250 AL834381 TSC_hg19_v1_chr2_-_160473021 NM_013450 AB040909	-70602	-	AK127551 BC107570 TSC_hg19_v1_chr2_-_160472070	-71607	-	AK093494 AX748164 NM_152528 AK129983 NM_001128213 TSC_hg19_v1_chr2_-_160143234 BC029520 NM_001128212	-400473	-	TSC_hg19_v1_chr2_-_160568946 BX641037 BX537650	25285	-	TSC_hg19_v1_chr2_+_160569016 AK292836 AK299051 AK022973 NM_022826 AK222880	25374	+	TSC_hg19_v1_chr2_+_160569027 BC065014	25419	+	BX647250|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AL834381|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##NM_013450|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AB040909|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK127551|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##BC107570|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK093494|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_152528|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##AK129983|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128213|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BC029520|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##NM_001128212|WDSUB1|151525|WD repeat, sterile alpha motif and U-box domain containing 1##BX641037|BAZ2B|29994|bromodomain adjacent to zinc finger domain, 2B##AK292836|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK299051|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK022973|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##NM_022826|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##AK222880|MARCH7|64844|membrane-associated ring finger (C3HC4) 7##BC065014|MARCH7|64844|membrane-associated ring finger (C3HC4) 7	1.701069	0.0	denovo_WM_7:37:0.376	denovo_WM_7:-58:0.313	denovo_WM_7:-59:0.313	denovo_WM_7:-60:0.313
chr3	12229221	12229372	reg1014559.p1	4.091	+	BC010553 NM_003256	-28446	-	BT019627 CU679743 DQ891795 DQ894978 U76456 TSC_hg19_v1_chr3_-_12200413 AK313018	-28917	-	TSC_hg19_v1_chr3_+_12045861 NM_003178 NM_133625 AK094464 BC051307 AB209088 U40215 AF077671 AF077737	-183393	+	TSC_hg19_v1_chr3_+_12329422 NM_005037 NM_138712 X90563 AK290581	100160	+	AB097931 AB107271 AB472042 NM_138711 TSC_hg19_v1_chr3_+_12330568 BC006811 AJ563370	101176	+	TSC_hg19_v1_chr3_+_12392993 NM_015869 U79012 AB451337 AB451486 U63415 AJ563369	163766	+	BC010553|TIMP4|7079|TIMP metallopeptidase inhibitor 4##NM_003256|TIMP4|7079|TIMP metallopeptidase inhibitor 4##BT019627|TIMP4|7079|TIMP metallopeptidase inhibitor 4##DQ891795|TIMP4|7079|TIMP metallopeptidase inhibitor 4##DQ894978|TIMP4|7079|TIMP metallopeptidase inhibitor 4##U76456|TIMP4|7079|TIMP metallopeptidase inhibitor 4##AK313018|TIMP4|7079|TIMP metallopeptidase inhibitor 4##NM_003178|SYN2|6854|synapsin II##NM_133625|SYN2|6854|synapsin II##AK094464|SYN2|6854|synapsin II##BC051307|SYN2|6854|synapsin II##AB209088|SYN2|6854|synapsin II##U40215|SYN2|6854|synapsin II##AF077671|SYN2|6854|synapsin II##AF077737|SYN2|6854|synapsin II##NM_005037|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_138712|PPARG|5468|peroxisome proliferator-activated receptor gamma##X90563|PPARG|5468|peroxisome proliferator-activated receptor gamma##AK290581|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB097931|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB107271|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB472042|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_138711|PPARG|5468|peroxisome proliferator-activated receptor gamma##BC006811|PPARG|5468|peroxisome proliferator-activated receptor gamma##AJ563370|PPARG|5468|peroxisome proliferator-activated receptor gamma##NM_015869|PPARG|5468|peroxisome proliferator-activated receptor gamma##U79012|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB451337|PPARG|5468|peroxisome proliferator-activated receptor gamma##AB451486|PPARG|5468|peroxisome proliferator-activated receptor gamma##U63415|PPARG|5468|peroxisome proliferator-activated receptor gamma##AJ563369|PPARG|5468|peroxisome proliferator-activated receptor gamma	0.097361	0.0	
chr7	26375688	26375840	reg1009243.p1	4.091	+	TSC_hg19_v1_chr7_+_26331633 BC031050 AK312850 AK296142	-44117	+	TSC_hg19_v1_chr7_+_26331538 NM_001199835 NM_013322 AK316088 BC034992	-44243	+	TSC_hg19_v1_chr7_+_26242052 AF086270	-133707	+	NM_001199837 AK307905	24764	+	AK309162 NM_001199838	28180	+	TSC_hg19_v1_chr7_+_26438248 AK056484	62498	+	BC031050|SNX10|29887|sorting nexin 10##AK312850|SNX10|29887|sorting nexin 10##AK296142|SNX10|29887|sorting nexin 10##NM_001199835|SNX10|29887|sorting nexin 10##NM_013322|SNX10|29887|sorting nexin 10##AK316088|SNX10|29887|sorting nexin 10##BC034992|SNX10|29887|sorting nexin 10##NM_001199837|SNX10|29887|sorting nexin 10##AK307905|SNX10|29887|sorting nexin 10##AK309162|SNX10|29887|sorting nexin 10##NM_001199838|SNX10|29887|sorting nexin 10##AK056484|LOC441204|441204|uncharacterized LOC441204	0.0	0.0	
chrX	16901567	16901647	reg1013194.p1	4.091	+	TSC_hg19_v1_chrX_-_16888462 NM_002893	-13110	-	TSC_hg19_v1_chrX_-_16888456 X72841	-13156	-	AB463219 CR541701 AK291567 TSC_hg19_v1_chrX_-_16888381 BC114500 BC114501 U35143	-13302	-	TSC_hg19_v1_chrX_+_16964847 AF010233 NM_001080975 NM_004726 AF511533 AF512951	63325	+	TSC_hg19_v1_chrX_+_17393357 AK302437	491747	+	TSC_hg19_v1_chrX_+_17393541 AY436752 NM_198270	491935	+	NM_002893|RBBP7|5931|retinoblastoma binding protein 7##X72841|RBBP7|5931|retinoblastoma binding protein 7##CR541701|RBBP7|5931|retinoblastoma binding protein 7##AK291567|RBBP7|5931|retinoblastoma binding protein 7##BC114500|RBBP7|5931|retinoblastoma binding protein 7##BC114501|RBBP7|5931|retinoblastoma binding protein 7##U35143|RBBP7|5931|retinoblastoma binding protein 7##AF010233|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_001080975|REPS2|9185|RALBP1 associated Eps domain containing 2##NM_004726|REPS2|9185|RALBP1 associated Eps domain containing 2##AF511533|REPS2|9185|RALBP1 associated Eps domain containing 2##AF512951|REPS2|9185|RALBP1 associated Eps domain containing 2##AK302437|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##AY436752|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)##NM_198270|NHS|4810|Nance-Horan syndrome (congenital cataracts and dental anomalies)	0.0	0.114185	
chr1	203723568	203723634	reg1017392.p1	4.090	+	TSC_hg19_v1_chr1_+_203596243 BC140774	-127369	+	TSC_hg19_v1_chr1_+_203595959 CR936708 CR749393	-127642	+	TSC_hg19_v1_chr1_+_203595922 NM_001001396 NM_001684	-127692	+	NM_001136190 NM_017773 AK301076 TSC_hg19_v1_chr1_+_203734310 AK301421 BC089408 AY090784	10730	+	NM_014827 TSC_hg19_v1_chr1_+_203764762 CR627439 AK095858	41173	+	TSC_hg19_v1_chr1_+_203764804 AK296983	41203	+	BC140774|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4##CR936708|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4##CR749393|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4##NM_001001396|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4##NM_001684|ATP2B4|493|ATPase, Ca++ transporting, plasma membrane 4##NM_001136190|LAX1|54900|lymphocyte transmembrane adaptor 1##NM_017773|LAX1|54900|lymphocyte transmembrane adaptor 1##AK301076|LAX1|54900|lymphocyte transmembrane adaptor 1##AK301421|LAX1|54900|lymphocyte transmembrane adaptor 1##BC089408|LAX1|54900|lymphocyte transmembrane adaptor 1##AY090784|LAX1|54900|lymphocyte transmembrane adaptor 1##NM_014827|ZC3H11A|9877|zinc finger CCCH-type containing 11A##CR627439|ZC3H11A|9877|zinc finger CCCH-type containing 11A##AK095858|ZC3H11A|9877|zinc finger CCCH-type containing 11A##AK296983|ZC3H11A|9877|zinc finger CCCH-type containing 11A	0.992267	0.0	denovo_WM_7:-18:0.992
chr18	2994687	2994831	reg1013639.p1	4.090	+	AB026706 TSC_hg19_v1_chr18_+_2907037	-87758	+	TSC_hg19_v1_chr18_+_2847006 AF270513 NM_032048 BC032231 BC136541	-147728	+	BC006008 NM_015295 TSC_hg19_v1_chr18_+_2655885	-338845	+	BC152448 D87436 NM_014646	17185	-	BC116183 BC116184 TSC_hg19_v1_chr18_-_3219875	225101	-	TSC_hg19_v1_chr18_-_3219987 AJ621424 AK125322 NM_003803 NM_019856	225286	-	AB026706|EMILIN2|84034|elastin microfibril interfacer 2##AF270513|EMILIN2|84034|elastin microfibril interfacer 2##NM_032048|EMILIN2|84034|elastin microfibril interfacer 2##BC032231|EMILIN2|84034|elastin microfibril interfacer 2##BC136541|EMILIN2|84034|elastin microfibril interfacer 2##BC006008|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##NM_015295|SMCHD1|23347|structural maintenance of chromosomes flexible hinge domain containing 1##BC152448|LPIN2|9663|lipin 2##D87436|LPIN2|9663|lipin 2##NM_014646|LPIN2|9663|lipin 2##BC116183|MYOM1|8736|myomesin 1, 185kDa##BC116184|MYOM1|8736|myomesin 1, 185kDa##AJ621424|MYOM1|8736|myomesin 1, 185kDa##AK125322|MYOM1|8736|myomesin 1, 185kDa##NM_003803|MYOM1|8736|myomesin 1, 185kDa##NM_019856|MYOM1|8736|myomesin 1, 185kDa	0.0	0.720021	CTCF.p2:-34:0.720
chr7	121022451	121022631	reg1010217.p1	4.090	+	AF169963 NM_057168	-53452	+	AF152584 NM_016087	-57121	+	AK025639 AK225313 TSC_hg19_v1_chr7_+_120702920	-319668	+	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	13796	-	TSC_hg19_v1_chr7_-_121036363 AK292731 AK290682 BC068526 NM_001040020 NM_014888	13873	-	NM_001206838 NM_001206839 NM_002851 TSC_hg19_v1_chr7_+_121513164	490620	+	AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##AF152584|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_016087|WNT16|51384|wingless-type MMTV integration site family, member 16##AK025639|C7orf58|79974|chromosome 7 open reading frame 58##AK225313|C7orf58|79974|chromosome 7 open reading frame 58##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C##AK292731|FAM3C|10447|family with sequence similarity 3, member C##AK290682|FAM3C|10447|family with sequence similarity 3, member C##BC068526|FAM3C|10447|family with sequence similarity 3, member C##NM_001040020|FAM3C|10447|family with sequence similarity 3, member C##NM_014888|FAM3C|10447|family with sequence similarity 3, member C##NM_001206838|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_001206839|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##NM_002851|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1	1.06319	0.0	denovo_WM_7:70:0.245	denovo_WM_7:71:0.245	denovo_WM_7:72:0.245	denovo_WM_7:73:0.245
chr7	142531201	142531333	reg1015004.p1	4.090	+	M12426 TSC_hg19_v1_chr7_+_142495248	-36072	+	NM_002769 AK293375 BC128225 BC128226 CR627200 AK312199 BC103998 M22612 AB528723 DQ778083 DQ846873	-73941	+	NM_001190487	-157137	+	TSC_hg19_v1_chr7_+_142552837 NM_004445 D83492 BC015495 BC051028 BC056159	21458	+	TSC_hg19_v1_chr7_+_142560518 BC110606 BC110607	29248	+	AF304463 AF365928 AJ243500 AJ243501 AF365927 AK291707 NM_018646 AJ487964	52116	-	NM_002769|PRSS1|5644|protease, serine, 1 (trypsin 1)##AK293375|PRSS1|5644|protease, serine, 1 (trypsin 1)##BC128226|PRSS1|5644|protease, serine, 1 (trypsin 1)##CR627200|PRSS1|5644|protease, serine, 1 (trypsin 1)##AK312199|PRSS1|5644|protease, serine, 1 (trypsin 1)##BC103998|PRSS2|5645|protease, serine, 2 (trypsin 2)##M22612|PRSS1|5644|protease, serine, 1 (trypsin 1)##DQ778083|PRSS1|5644|protease, serine, 1 (trypsin 1)##DQ846873|PRSS2|5645|protease, serine, 2 (trypsin 2)##NM_001190487|MTRNR2L6|100463482|MT-RNR2-like 6##NM_004445|EPHB6|2051|EPH receptor B6##D83492|EPHB6|2051|EPH receptor B6##BC015495|EPHB6|2051|EPH receptor B6##BC051028|EPHB6|2051|EPH receptor B6##BC056159|EPHB6|2051|EPH receptor B6##BC110606|EPHB6|2051|EPH receptor B6##BC110607|EPHB6|2051|EPH receptor B6##AF304463|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##AF365928|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##AJ243500|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##AJ243501|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##AF365927|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##AK291707|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##NM_018646|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6##AJ487964|TRPV6|55503|transient receptor potential cation channel, subfamily V, member 6	1.760511	0.0	denovo_WM_7:-33:0.352	denovo_WM_7:-34:0.637	denovo_WM_7:-51:0.710
chr9	99428995	99429112	reg1010690.p1	4.090	+	TSC_hg19_v1_chr9_-_99417600 BC136501 BC136503 NM_153698	-11443	-	TSC_hg19_v1_chr9_-_99382126 AF064104 AF064105 NM_003671 NM_033331	-46933	-	TSC_hg19_v1_chr9_-_99329110 AK126388 NM_001077181	-99906	-	AB023189 NM_014930 TSC_hg19_v1_chr9_-_99540352 BC036676 BC068587 BC058022 AK292600	111300	-	BC137073 AK131468 NM_001001662	187333	-	NM_001045477 NM_001170741	262232	+	BC136501|C9orf21|195827|chromosome 9 open reading frame 21##BC136503|C9orf21|195827|chromosome 9 open reading frame 21##NM_153698|C9orf21|195827|chromosome 9 open reading frame 21##AF064104|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AF064105|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_003671|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_033331|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AK126388|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##NM_001077181|CDC14B|8555|CDC14 cell division cycle 14 homolog B (S. cerevisiae)##AB023189|ZNF510|22869|zinc finger protein 510##NM_014930|ZNF510|22869|zinc finger protein 510##BC036676|ZNF510|22869|zinc finger protein 510##BC068587|ZNF510|22869|zinc finger protein 510##BC058022|ZNF510|22869|zinc finger protein 510##AK292600|ZNF510|22869|zinc finger protein 510##BC137073|ZNF782|158431|zinc finger protein 782##AK131468|ZNF782|158431|zinc finger protein 782##NM_001001662|ZNF782|158431|zinc finger protein 782##NM_001045477|FAM22G|441457|family with sequence similarity 22, member G##NM_001170741|FAM22G|441457|family with sequence similarity 22, member G	0.997556	0.0	denovo_WM_7:-44:0.771
chr1	28770605	28770700	reg1013634.p1	4.089	+	NM_023923 BC021247	-5982	+	TSC_hg19_v1_chr1_+_28696251 NM_001048183 CR749449 AK025436 BC029266 BC016152 BC068508	-74427	+	NM_001127350 NM_017638 AK296130 AK000052 AB107222 BC002694 TSC_hg19_v1_chr1_+_28655576	-115105	+	NM_001048199 TSC_hg19_v1_chr1_+_28832500	61846	+	TSC_hg19_v1_chr1_+_28832555 AJ006834 AJ006835 X06130 BC012122 BC065008 BC007300 BC036903 BC006790 BC017334	61930	+	X12654 TSC_hg19_v1_chr1_+_28844754 NM_001048194 NM_001048195 NM_001269	74051	+	NM_023923|PHACTR4|65979|phosphatase and actin regulator 4##BC021247|PHACTR4|65979|phosphatase and actin regulator 4##NM_001048183|PHACTR4|65979|phosphatase and actin regulator 4##CR749449|PHACTR4|65979|phosphatase and actin regulator 4##AK025436|PHACTR4|65979|phosphatase and actin regulator 4##BC029266|PHACTR4|65979|phosphatase and actin regulator 4##BC016152|PHACTR4|65979|phosphatase and actin regulator 4##BC068508|PHACTR4|65979|phosphatase and actin regulator 4##NM_001127350|MED18|54797|mediator complex subunit 18##NM_017638|MED18|54797|mediator complex subunit 18##AK296130|MED18|54797|mediator complex subunit 18##AK000052|MED18|54797|mediator complex subunit 18##AB107222|MED18|54797|mediator complex subunit 18##BC002694|MED18|54797|mediator complex subunit 18##NM_001048199|RCC1|1104|regulator of chromosome condensation 1##AJ006834|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##AJ006835|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC012122|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC065008|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC006790|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##BC017334|SNHG3|8420|small nucleolar RNA host gene 3 (non-protein coding)##X12654|RCC1|1104|regulator of chromosome condensation 1##NM_001048194|RCC1|1104|regulator of chromosome condensation 1##NM_001048195|RCC1|1104|regulator of chromosome condensation 1##NM_001269|RCC1|1104|regulator of chromosome condensation 1	1.991357	0.0	denovo_WM_7:79:0.270	denovo_WM_7:80:0.727	denovo_WM_7:95:0.860
chr1	38484694	38484801	reg1008479.p2	4.089	+	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-6317	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-6362	+	TSC_hg19_v1_chr1_-_38471187 BC014501 BC001351 BC011697 AK309179 AK290641 NM_001243878 NM_004468	-13514	-	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	27702	-	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	840639	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	854269	-	AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC014501|FHL3|2275|four and a half LIM domains 3##BC001351|FHL3|2275|four and a half LIM domains 3##BC011697|FHL3|2275|four and a half LIM domains 3##AK309179|FHL3|2275|four and a half LIM domains 3##AK290641|FHL3|2275|four and a half LIM domains 3##NM_001243878|FHL3|2275|four and a half LIM domains 3##NM_004468|FHL3|2275|four and a half LIM domains 3##L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein	0.997196	0.583662	CTCF.p2:14:0.584
chr15	75399763	75399923	reg1014207.p1	4.089	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-83862	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-83915	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-111936	+	AK128205 TSC_hg19_v1_chr15_+_75491259	91403	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	94369	+	BC110367 TSC_hg19_v1_chr15_+_75494233	94390	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.988737	0.0	denovo_WM_7:-27:0.412	denovo_WM_7:-28:0.462
chr16	69343948	69344128	reg1014707.p1	4.089	+	TSC_hg19_v1_chr16_+_69221066 BC031058 AF243385 NM_006750 U40572 BC048215 EU831451 EU831538	-123010	+	TSC_hg19_v1_chr16_+_69166551 AK027634 AK027675 AK310104 AB075868 BC009348	-177485	+	TSC_hg19_v1_chr16_+_69166532 BX647265 AK074795	-177511	+	TSC_hg19_v1_chr16_+_69345258 AK315026 AF132747 AF159063 AF255952 NM_013245 BC047932 AF112215 CU690536 EU831747	1294	+	TSC_hg19_v1_chr16_-_69364492 AF322879 BC019912 AF239156 NM_022341	20454	-	TSC_hg19_v1_chr16_-_69373468 BC063831	29399	-	BC031058|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AF243385|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##NM_006750|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##U40572|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##BC048215|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831451|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831538|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AK027634|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK027675|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK310104|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AB075868|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BC009348|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BX647265|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK074795|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK315026|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF132747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF159063|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF255952|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##NM_013245|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##BC047932|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF112215|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##EU831747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF322879|PDF|64146|peptide deformylase (mitochondrial)##BC019912|PDF|64146|peptide deformylase (mitochondrial)##AF239156|PDF|64146|peptide deformylase (mitochondrial)##NM_022341|PDF|64146|peptide deformylase (mitochondrial)##BC063831|COG8|84342|component of oligomeric golgi complex 8	2.484297	0.0	denovo_WM_7:-29:0.346
chr19	53039215	53039361	reg1007904.p2	4.089	+	CR749856 TSC_hg19_v1_chr19_+_53030941 NM_001039886	-8359	+	AB091373 AB091374 AK299106 NM_001099694 TSC_hg19_v1_chr19_+_52956836 AL833487 AB091376 AB091375	-82461	+	AB086839 AB086840 AB091368 AB091369 NM_001143938 NM_001143939	-104622	+	TSC_hg19_v1_chr19_+_53073539 NM_018260 AK001753 BC131719 BC136425 BC136426 BC054884 BC080612	34254	+	BC067346 NM_001172655	34628	+	TSC_hg19_v1_chr19_-_53141603 BC032867 AK027518 NM_001105549 NM_001105550 NM_001105551 NM_001105552 NM_001105553 NM_001105554 NM_018300	102336	-	CR749856|ZNF808|388558|zinc finger protein 808##NM_001039886|ZNF808|388558|zinc finger protein 808##AB091373|ZNF578|147660|zinc finger protein 578##AB091374|ZNF578|147660|zinc finger protein 578##AK299106|ZNF578|147660|zinc finger protein 578##NM_001099694|ZNF578|147660|zinc finger protein 578##AB091376|ZNF578|147660|zinc finger protein 578##AB091375|ZNF578|147660|zinc finger protein 578##AB086839|ZNF534|147658|zinc finger protein 534##AB086840|ZNF534|147658|zinc finger protein 534##NM_001143938|ZNF534|147658|zinc finger protein 534##NM_001143939|ZNF534|147658|zinc finger protein 534##NM_018260|ZNF701|55762|zinc finger protein 701##AK001753|ZNF701|55762|zinc finger protein 701##BC131719|ZNF701|55762|zinc finger protein 701##BC136425|ZNF701|55762|zinc finger protein 701##BC136426|ZNF701|55762|zinc finger protein 701##BC054884|ZNF701|55762|zinc finger protein 701##BC080612|ZNF701|55762|zinc finger protein 701##BC067346|ZNF701|55762|zinc finger protein 701##NM_001172655|ZNF701|55762|zinc finger protein 701##BC032867|ZNF83|55769|zinc finger protein 83##AK027518|ZNF83|55769|zinc finger protein 83##NM_001105549|ZNF83|55769|zinc finger protein 83##NM_001105550|ZNF83|55769|zinc finger protein 83##NM_001105551|ZNF83|55769|zinc finger protein 83##NM_001105552|ZNF83|55769|zinc finger protein 83##NM_001105553|ZNF83|55769|zinc finger protein 83##NM_001105554|ZNF83|55769|zinc finger protein 83##NM_018300|ZNF83|55769|zinc finger protein 83	0.0	0.0	
chr4	14167331	14167471	reg1017402.p2	4.089	+	TSC_hg19_v1_chr4_-_13629350 BC065546 BC043603 AF528529 NM_148894 BC087835	-538084	-	TSC_hg19_v1_chr4_-_13549425 BC035174 AK058104 BC048110 BC053955	-617987	-	AB463932 AF009801 EU446467 BC111966 NM_001189	-621326	-	BC039114 BC044764 BC047127 TSC_hg19_v1_chr4_-_15003743	836308	-	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	836594	-	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	836896	+	BC065546|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC043603|BOD1L|259282|biorientation of chromosomes in cell division 1-like##AF528529|BOD1L|259282|biorientation of chromosomes in cell division 1-like##NM_148894|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC087835|BOD1L|259282|biorientation of chromosomes in cell division 1-like##BC035174|LOC285548|285548|uncharacterized LOC285548##AK058104|LOC285548|285548|uncharacterized LOC285548##BC048110|LOC285548|285548|uncharacterized LOC285548##BC053955|LOC285548|285548|uncharacterized LOC285548##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2##BC039114|LOC441009|441009|uncharacterized LOC441009##BC044764|LOC441009|441009|uncharacterized LOC441009##BC047127|LOC441009|441009|uncharacterized LOC441009##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2	0.0	0.0	
chr4	96211902	96212047	reg1012461.p1	4.089	+	TSC_hg19_v1_chr4_+_95679109 NM_001203 U89326	-532868	+	BC026029 AM393306 AM393394 AM393485 AM393621 AM393813 DQ890686 DQ893868 AB587372 CU676108 CU679071 AY598328 BT007328 TSC_hg19_v1_chr4_+_95376500	-835524	+	TSC_hg19_v1_chr4_+_95373092 BC017902 BC008741 AK291898 AK291624 AK304125 AK296980 AL832157 AL832686 AF061258 AL833151 AL833438	-838878	+	TSC_hg19_v1_chr4_-_96470125 AK308421 AF055634 AK290500	258205	-	BC034747 BC041156 TSC_hg19_v1_chr4_-_96470369 NM_003728	258402	-	NM_005390 BC030697 BC094760 BC066953 BC119656 BC119657 BC127637 BC127638 AK313872	549284	+	NM_001203|BMPR1B|658|bone morphogenetic protein receptor, type IB##U89326|BMPR1B|658|bone morphogenetic protein receptor, type IB##BC026029|PDLIM5|10611|PDZ and LIM domain 5##AM393306|PDLIM5|10611|PDZ and LIM domain 5##AM393394|PDLIM5|10611|PDZ and LIM domain 5##AM393485|PDLIM5|10611|PDZ and LIM domain 5##AM393621|PDLIM5|10611|PDZ and LIM domain 5##AM393813|PDLIM5|10611|PDZ and LIM domain 5##DQ890686|PDLIM5|10611|PDZ and LIM domain 5##DQ893868|PDLIM5|10611|PDZ and LIM domain 5##AY598328|PDLIM5|10611|PDZ and LIM domain 5##BT007328|PDLIM5|10611|PDZ and LIM domain 5##BC017902|PDLIM5|10611|PDZ and LIM domain 5##BC008741|PDLIM5|10611|PDZ and LIM domain 5##AK291898|PDLIM5|10611|PDZ and LIM domain 5##AK291624|PDLIM5|10611|PDZ and LIM domain 5##AK304125|PDLIM5|10611|PDZ and LIM domain 5##AK296980|PDLIM5|10611|PDZ and LIM domain 5##AL832157|PDLIM5|10611|PDZ and LIM domain 5##AL832686|PDLIM5|10611|PDZ and LIM domain 5##AF061258|PDLIM5|10611|PDZ and LIM domain 5##AL833151|PDLIM5|10611|PDZ and LIM domain 5##AL833438|PDLIM5|10611|PDZ and LIM domain 5##AK308421|UNC5C|8633|unc-5 homolog C (C. elegans)##AF055634|UNC5C|8633|unc-5 homolog C (C. elegans)##AK290500|UNC5C|8633|unc-5 homolog C (C. elegans)##BC034747|UNC5C|8633|unc-5 homolog C (C. elegans)##BC041156|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_003728|UNC5C|8633|unc-5 homolog C (C. elegans)##NM_005390|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC030697|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC094760|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC066953|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119656|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC119657|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127637|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##BC127638|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2##AK313872|PDHA2|5161|pyruvate dehydrogenase (lipoamide) alpha 2	0.0	0.0	
chr6	43021785	43021920	reg1011081.p2	4.089	+	TSC_hg19_v1_chr6_-_43021630 BC033647 NM_001168370 NM_014780	-192	-	TSC_hg19_v1_chr6_-_43021620 AK292806 AK302668	-235	-	TSC_hg19_v1_chr6_-_43021590 D38548	-360	-	TSC_hg19_v1_chr6_-_43027163 CU676510 BC013685 BC020212 AK301041 AK314948 AF086160 AF132956 AK307208 NM_015950	5365	-	AK297433 AK056393 NM_138343 NM_201521 BC012357 BC080637 BC103727	5528	+	AK094102 NM_201523 AK055293 BX640717	5778	+	BC033647|CUL7|9820|cullin 7##NM_001168370|CUL7|9820|cullin 7##NM_014780|CUL7|9820|cullin 7##AK292806|CUL7|9820|cullin 7##AK302668|CUL7|9820|cullin 7##D38548|CUL7|9820|cullin 7##BC013685|MRPL2|51069|mitochondrial ribosomal protein L2##BC020212|MRPL2|51069|mitochondrial ribosomal protein L2##AK301041|MRPL2|51069|mitochondrial ribosomal protein L2##AK314948|MRPL2|51069|mitochondrial ribosomal protein L2##AF086160|MRPL2|51069|mitochondrial ribosomal protein L2##AF132956|MRPL2|51069|mitochondrial ribosomal protein L2##NM_015950|MRPL2|51069|mitochondrial ribosomal protein L2##AK297433|KLC4|89953|kinesin light chain 4##AK056393|KLC4|89953|kinesin light chain 4##NM_138343|KLC4|89953|kinesin light chain 4##NM_201521|KLC4|89953|kinesin light chain 4##BC012357|KLC4|89953|kinesin light chain 4##BC080637|KLC4|89953|kinesin light chain 4##BC103727|KLC4|89953|kinesin light chain 4##AK094102|KLC4|89953|kinesin light chain 4##NM_201523|KLC4|89953|kinesin light chain 4##AK055293|KLC4|89953|kinesin light chain 4##BX640717|KLC4|89953|kinesin light chain 4	1.982494	0.0	denovo_WM_7:67:0.868	denovo_WM_7:83:0.951
chr8	126354046	126354149	reg1012976.p1	4.089	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-250000	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-250040	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-250075	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	88482	+	TSC_hg19_v1_chr8_-_126963395 BX648371	609316	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1216458	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.991894	0.0	
chr15	73928839	73928966	reg1011195.p1	4.088	+	TSC_hg19_v1_chr15_-_73925720 BC105979 AK129908 AF109126 AF109127 AB209812 BC067828 NM_001161363 NM_001161364 NM_012428 NM_017455	-3176	-	HQ258139 TSC_hg19_v1_chr15_-_73925588 BC117462 BC143880 BC143881 AK313441 AK314248 BC030773 CR936779 AK304478 AK297184	-3316	-	NM_001042367 AK131030 BC055412	-193393	+	TSC_hg19_v1_chr15_+_73976549 AJ583696	47646	+	BC062581 NM_001024736 NM_025240 TSC_hg19_v1_chr15_+_73976629	47732	+	TSC_hg19_v1_chr15_+_73976696 AY358343	47795	+	BC105979|NPTN|27020|neuroplastin##AK129908|NPTN|27020|neuroplastin##AF109126|NPTN|27020|neuroplastin##AF109127|NPTN|27020|neuroplastin##AB209812|NPTN|27020|neuroplastin##BC067828|NPTN|27020|neuroplastin##NM_001161363|NPTN|27020|neuroplastin##NM_001161364|NPTN|27020|neuroplastin##NM_012428|NPTN|27020|neuroplastin##NM_017455|NPTN|27020|neuroplastin##HQ258139|NPTN|27020|neuroplastin##BC117462|NPTN|27020|neuroplastin##BC143880|NPTN|27020|neuroplastin##BC143881|NPTN|27020|neuroplastin##AK313441|NPTN|27020|neuroplastin##AK314248|NPTN|27020|neuroplastin##BC030773|NPTN|27020|neuroplastin##CR936779|NPTN|27020|neuroplastin##AK304478|NPTN|27020|neuroplastin##AK297184|NPTN|27020|neuroplastin##NM_001042367|C15orf60|283677|chromosome 15 open reading frame 60##AK131030|C15orf60|283677|chromosome 15 open reading frame 60##BC055412|C15orf60|283677|chromosome 15 open reading frame 60##BC062581|CD276|80381|CD276 molecule##NM_001024736|CD276|80381|CD276 molecule##NM_025240|CD276|80381|CD276 molecule##AY358343|CD276|80381|CD276 molecule	0.504002	0.992382	denovo_WM_7:-64:0.226	CTCF.p2:97:0.992
chr18	9673429	9673609	reg1002598.p2	4.088	+	AK027064 TSC_hg19_v1_chr18_-_9614566 BC060829 AK315106 AF111106 NM_001042388 NM_005134	-58942	-	TSC_hg19_v1_chr18_-_9614547 AF200478 AK293869 AK292538	-59015	-	TSC_hg19_v1_chr18_+_9475545 NM_006788 BC013126	-197922	+	TSC_hg19_v1_chr18_+_9708217 AF234995 NM_006868	34690	+	AK314809 TSC_hg19_v1_chr18_+_9708269	34751	+	TSC_hg19_v1_chr18_+_9708299 BC001148	34783	+	AK027064|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##BC060829|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AK315106|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AF111106|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##NM_001042388|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##NM_005134|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AF200478|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AK293869|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##AK292538|PPP4R1|9989|protein phosphatase 4, regulatory subunit 1##NM_006788|RALBP1|10928|ralA binding protein 1##BC013126|RALBP1|10928|ralA binding protein 1##AF234995|RAB31|11031|RAB31, member RAS oncogene family##NM_006868|RAB31|11031|RAB31, member RAS oncogene family##AK314809|RAB31|11031|RAB31, member RAS oncogene family##BC001148|RAB31|11031|RAB31, member RAS oncogene family	0.0	0.0	
chr3	53015608	53015694	reg1011643.p2	4.088	+	TSC_hg19_v1_chr3_-_52931595 NM_001198974 NM_198563	-83994	-	TSC_hg19_v1_chr3_-_52931547 AY726591 BC047015	-84202	-	NM_205853	-146417	-	TSC_hg19_v1_chr3_-_53079286 NM_001005159	63658	-	TSC_hg19_v1_chr3_-_53080023 BC014614 AF168132	64343	-	TSC_hg19_v1_chr3_-_53080045 AK313965 NM_001005158 NM_016329	64412	-	NM_001198974|TMEM110-MUSTN1|100526772|TMEM110-MUSTN1 readthrough##NM_198563|TMEM110|375346|transmembrane protein 110##AY726591|TMEM110|375346|transmembrane protein 110##BC047015|TMEM110|375346|transmembrane protein 110##NM_205853|MUSTN1|389125|musculoskeletal, embryonic nuclear protein 1##NM_001005159|SFMBT1|51460|Scm-like with four mbt domains 1##BC014614|SFMBT1|51460|Scm-like with four mbt domains 1##AF168132|SFMBT1|51460|Scm-like with four mbt domains 1##AK313965|SFMBT1|51460|Scm-like with four mbt domains 1##NM_001005158|SFMBT1|51460|Scm-like with four mbt domains 1##NM_016329|SFMBT1|51460|Scm-like with four mbt domains 1	0.997151	0.0	
chrX	47420728	47420826	reg1011512.p2	4.088	+	NM_001654 X04790 TSC_hg19_v1_chrX_+_47420605 AB208831 AK300975 AK130043 AK297453 AK307747 BC002466 BC007514	-210	+	BC015023 NM_007130 NM_153380	-78433	-	U28687 NM_003446 BC075003 AB528013 EU446919	-190754	+	TSC_hg19_v1_chrX_+_47441773 NM_003254 AK074854 AK296116 BC000866 BC007097	20946	+	TSC_hg19_v1_chrX_+_47441834 X03124 M12670 AK310206 AK311937 AK307222 M59906 X02598	21046	+	TSC_hg19_v1_chrX_-_47479098 AB591026	58335	-	NM_001654|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##X04790|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AB208831|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK300975|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK130043|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK297453|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##AK307747|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC002466|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC007514|ARAF|369|v-raf murine sarcoma 3611 viral oncogene homolog##BC015023|ZNF41|7592|zinc finger protein 41##NM_007130|ZNF41|7592|zinc finger protein 41##NM_153380|ZNF41|7592|zinc finger protein 41##U28687|ZNF157|7712|zinc finger protein 157##NM_003446|ZNF157|7712|zinc finger protein 157##BC075003|ZNF157|7712|zinc finger protein 157##EU446919|ZNF157|7712|zinc finger protein 157##NM_003254|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK074854|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK296116|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC000866|TIMP1|7076|TIMP metallopeptidase inhibitor 1##BC007097|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X03124|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M12670|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK310206|TIMP1|7076|TIMP metallopeptidase inhibitor 1##AK311937|TIMP1|7076|TIMP metallopeptidase inhibitor 1##M59906|TIMP1|7076|TIMP metallopeptidase inhibitor 1##X02598|TIMP1|7076|TIMP metallopeptidase inhibitor 1	0.0	0.0	
chrX	87868622	87868802	reg1001757.p2	4.088	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-1095907	+	AK055953 AK298787 NM_001139515	-2350742	+	AK091842 AX747214 TSC_hg19_v1_chrX_+_85403461	-2465247	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	133528	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	1308299	+	NM_080832	2820884	+	NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##AK055953|DACH2|117154|dachshund homolog 2 (Drosophila)##AK298787|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001139515|DACH2|117154|dachshund homolog 2 (Drosophila)##AK091842|DACH2|117154|dachshund homolog 2 (Drosophila)##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5	0.60198	0.0	
chr1	174922076	174922256	reg1014130.p1	4.087	+	NM_001035230 BC012094	-77497	+	NM_001243763 AL049701	-78607	+	AB007940 NM_001243765	-153132	+	AK316355 NM_001243764 AK316219 AK298711	11755	+	NM_001007214 AK093425 AX748118	46417	+	TSC_hg19_v1_chr1_+_174968845 NM_014412	46701	+	NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##AB007940|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243765|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001007214|CACYBP|27101|calcyclin binding protein##AK093425|CACYBP|27101|calcyclin binding protein##NM_014412|CACYBP|27101|calcyclin binding protein	0.998516	0.0	denovo_WM_7:14:0.310	denovo_WM_7:15:0.310	denovo_WM_7:16:0.310
chr15	38983864	38983968	reg1012715.p1	4.087	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	-126985	-	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	-237571	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	-438894	+	AK093014 AX747856 BC119016 BC119810 NM_207444	4882	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	559009	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	889413	+	EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1	0.996402	0.0	denovo_WM_7:31:0.423	denovo_WM_7:33:0.456
chr16	10875299	10875479	reg1008548.p3	4.087	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-37685	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-86624	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-200899	-	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	37159	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	95723	+	BC071683 TSC_hg19_v1_chr16_-_11036171	160777	-	AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)	0.0	0.0	
chr19	12723575	12723702	reg1009820.p2	4.087	+	AK307775 NM_153358 AK298597 TSC_hg19_v1_chr19_+_12721749 AX721060 AK074877 AK297715 BC106937 BC106938	-1874	+	AB385437 CU691590 EU446833 BC038586 AB033024 NM_020714 TSC_hg19_v1_chr19_-_12721628	-2077	-	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	-61365	-	TSC_hg19_v1_chr19_-_12777530 U68382 U68567 AB209921 DQ891878 DQ895066 AB527181 U60266 BC000736	53874	-	TSC_hg19_v1_chr19_-_12777557 U05572 AK291572 AK303418 NM_000528 NM_001173498	53927	-	TSC_hg19_v1_chr19_+_12777620 NM_001099737 AK074525 AK314164	53998	+	AK307775|ZNF791|163049|zinc finger protein 791##NM_153358|ZNF791|163049|zinc finger protein 791##AK298597|ZNF791|163049|zinc finger protein 791##AK074877|ZNF791|163049|zinc finger protein 791##AK297715|ZNF791|163049|zinc finger protein 791##BC106937|ZNF791|163049|zinc finger protein 791##BC106938|ZNF791|163049|zinc finger protein 791##EU446833|ZNF490|57474|zinc finger protein 490##BC038586|ZNF490|57474|zinc finger protein 490##AB033024|ZNF490|57474|zinc finger protein 490##NM_020714|ZNF490|57474|zinc finger protein 490##BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564##U68382|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U68567|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AB209921|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ891878|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ895066|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U60266|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##BC000736|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U05572|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AK291572|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AK303418|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_000528|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_001173498|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##NM_001099737|WDR83|84292|WD repeat domain 83##AK074525|WDR83|84292|WD repeat domain 83##AK314164|WDR83|84292|WD repeat domain 83	0.997557	0.0	
chr19	5715199	5715318	reg1016711.p1	4.087	+	TSC_hg19_v1_chr19_+_5690333 NM_015414 BC003052 AF077043 AM393173 AM393746 DQ892096 DQ895289 CR533465	-24833	+	TSC_hg19_v1_chr19_+_5690307 BC004971	-24941	+	TSC_hg19_v1_chr19_+_5690306 NM_033643 BC091508 AL050273 AY590779 AK311990	-24970	+	TSC_hg19_v1_chr19_-_5720149 X76040 DQ892955 DQ896202 BC000235	4886	-	TSC_hg19_v1_chr19_-_5720155 AK096433 AK127867 AK298531 AK309720	4898	-	TSC_hg19_v1_chr19_-_5720158 AK096626 NM_004793	4909	-	NM_015414|RPL36|25873|ribosomal protein L36##BC003052|RPL36|25873|ribosomal protein L36##AF077043|RPL36|25873|ribosomal protein L36##AM393173|RPL36|25873|ribosomal protein L36##AM393746|RPL36|25873|ribosomal protein L36##DQ892096|RPL36|25873|ribosomal protein L36##DQ895289|RPL36|25873|ribosomal protein L36##CR533465|RPL36|25873|ribosomal protein L36##BC004971|RPL36|25873|ribosomal protein L36##NM_033643|RPL36|25873|ribosomal protein L36##BC091508|RPL36|25873|ribosomal protein L36##AL050273|RPL36|25873|ribosomal protein L36##AK311990|RPL36|25873|ribosomal protein L36##DQ892955|LONP1|9361|lon peptidase 1, mitochondrial##DQ896202|LONP1|9361|lon peptidase 1, mitochondrial##BC000235|LONP1|9361|lon peptidase 1, mitochondrial##AK096433|LONP1|9361|lon peptidase 1, mitochondrial##AK127867|LONP1|9361|lon peptidase 1, mitochondrial##AK298531|LONP1|9361|lon peptidase 1, mitochondrial##AK309720|LONP1|9361|lon peptidase 1, mitochondrial##AK096626|LONP1|9361|lon peptidase 1, mitochondrial##NM_004793|LONP1|9361|lon peptidase 1, mitochondrial	0.996975	0.0	denovo_WM_7:93:0.424	denovo_WM_7:94:0.424
chr22	42148386	42148459	reg1013134.p2	4.087	+	BC025400 NM_152513 BC035720 BC144638	-52910	+	BC035403 NM_001142964 AK131457	-61864	+	AK124020 TSC_hg19_v1_chr22_-_42084824 BC005358 AF155235 NM_001003796	-63557	-	TSC_hg19_v1_chr22_+_42196682 NM_024821 AK026002 AK299311 BC017693 CR456484	48250	+	NM_004599 TSC_hg19_v1_chr22_+_42229105	80683	+	TSC_hg19_v1_chr22_+_42229114 BC051799	80690	+	BC025400|MEI1|150365|meiosis inhibitor 1##NM_152513|MEI1|150365|meiosis inhibitor 1##BC035720|MEI1|150365|meiosis inhibitor 1##BC144638|MEI1|150365|meiosis inhibitor 1##BC035403|C22orf46|79640|chromosome 22 open reading frame 46##NM_001142964|C22orf46|79640|chromosome 22 open reading frame 46##AK131457|C22orf46|79640|chromosome 22 open reading frame 46##BC005358|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##AF155235|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##NM_001003796|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##NM_024821|CCDC134|79879|coiled-coil domain containing 134##AK026002|CCDC134|79879|coiled-coil domain containing 134##AK299311|CCDC134|79879|coiled-coil domain containing 134##BC017693|CCDC134|79879|coiled-coil domain containing 134##CR456484|CCDC134|79879|coiled-coil domain containing 134##NM_004599|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051799|SREBF2|6721|sterol regulatory element binding transcription factor 2	0.0	0.0	
chr5	77005852	77005964	reg1002419.p1	4.087	+	TSC_hg19_v1_chr5_-_76934509 BC001800 NM_032109	-71394	-	EU446696 AB527841 TSC_hg19_v1_chr5_-_76934486	-71479	-	TSC_hg19_v1_chr5_-_76788333 AK001766 BC001807 NM_018268	-217593	-	BT007354 CR542170 CR542186 TSC_hg19_v1_chr5_-_77072105 AK300031 BC067837 BC105285 AF038952 AK312207 AK128395 BC018210 NM_004607	66224	-	BC113045 CU691576 DQ894915 EU176289 TSC_hg19_v1_chr5_-_77590458 AK225908 U91931	584517	-	TSC_hg19_v1_chr5_-_77590488 AY623424 AK303300	584569	-	BC001800|OTP|23440|orthopedia homeobox##NM_032109|OTP|23440|orthopedia homeobox##EU446696|OTP|23440|orthopedia homeobox##AK001766|WDR41|55255|WD repeat domain 41##BC001807|WDR41|55255|WD repeat domain 41##NM_018268|WDR41|55255|WD repeat domain 41##BT007354|TBCA|6902|tubulin folding cofactor A##CR542170|TBCA|6902|tubulin folding cofactor A##CR542186|TBCA|6902|tubulin folding cofactor A##AK300031|TBCA|6902|tubulin folding cofactor A##BC067837|TBCA|6902|tubulin folding cofactor A##BC105285|TBCA|6902|tubulin folding cofactor A##AF038952|TBCA|6902|tubulin folding cofactor A##AK312207|TBCA|6902|tubulin folding cofactor A##BC018210|TBCA|6902|tubulin folding cofactor A##NM_004607|TBCA|6902|tubulin folding cofactor A##DQ894915|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##EU176289|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK225908|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##U91931|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AY623424|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit##AK303300|AP3B1|8546|adaptor-related protein complex 3, beta 1 subunit	0.0	0.0	
chr8	66948896	66949013	reg1014922.p1	4.087	+	NM_033105 BC016742 AF368276 AL133660	-15135	+	TSC_hg19_v1_chr8_-_66754300 AK292680	-194662	-	NM_001242318	-194986	-	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	90386	+	BC002599 BC011031 AK075431 NM_000756	141813	-	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	392352	+	NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AK292680|PDE7A|5150|phosphodiesterase 7A##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	0.994088	0.994854	denovo_WM_7:33:0.704	CTCF.p2:-40:0.995
chr1	231547725	231547825	reg1009047.p1	4.086	+	TSC_hg19_v1_chr1_+_231473794 BC015740	-73988	+	NM_001010984 NM_032018 BC068478 TSC_hg19_v1_chr1_+_231473753	-74057	+	CU690194 AB587600 BC035763 TSC_hg19_v1_chr1_-_231473577 NM_175876 AK096460	-74221	-	AF229245 NM_022051	13014	-	FJ804217 FJ804218 FJ804219 FJ804220 FJ804221 FJ804222 FJ804223 FJ804224 NM_005999 X95073 TSC_hg19_v1_chr1_+_231664423 BC011797 BC000236 BC010376 AK313068	116656	+	TSC_hg19_v1_chr1_+_231762561 AF222980 AJ506177 AJ506178 FJ804174 FJ804175 FJ804176 FJ804177 FJ804178 FJ804179 FJ804180 FJ804181 FJ804182 FJ804183 FJ804184 FJ804185 FJ804186 FJ804187 FJ804188 FJ804189 FJ804190 FJ804191 FJ804192 FJ804193 FJ804194 FJ804195 FJ804196 FJ804197 FJ804198 FJ804199 FJ804200 FJ804201 FJ804202 FJ804203 FJ804204 FJ804205 FJ804206 FJ804207 FJ804208 FJ804209 FJ804210 FJ804211 FJ804212 FJ804213 FJ804214 FJ804215 FJ804216 NM_001012957 NM_001012958 NM_001012959 NM_001164537 NM_001164538 NM_001164539 NM_001164540 NM_001164541 NM_001164542 NM_001164544 NM_001164545 NM_001164546 NM_001164547 NM_001164548 NM_001164549 NM_001164550 NM_001164551 NM_001164552 NM_001164553 NM_001164554 NM_001164555 NM_001164556 NM_018662 AB007926 BC151225 BC142622 BC038954	214780	+	BC015740|C1orf124|83932|chromosome 1 open reading frame 124##NM_001010984|C1orf124|83932|chromosome 1 open reading frame 124##NM_032018|C1orf124|83932|chromosome 1 open reading frame 124##BC068478|C1orf124|83932|chromosome 1 open reading frame 124##BC035763|EXOC8|149371|exocyst complex component 8##NM_175876|EXOC8|149371|exocyst complex component 8##AK096460|EXOC8|149371|exocyst complex component 8##AF229245|EGLN1|54583|egl nine homolog 1 (C. elegans)##NM_022051|EGLN1|54583|egl nine homolog 1 (C. elegans)##FJ804217|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804218|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804219|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804220|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804221|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804222|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804223|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##FJ804224|TSNAX-DISC1|100303453|TSNAX-DISC1 readthrough##NM_005999|TSNAX|7257|translin-associated factor X##X95073|TSNAX|7257|translin-associated factor X##BC011797|TSNAX|7257|translin-associated factor X##BC010376|TSNAX|7257|translin-associated factor X##AK313068|TSNAX|7257|translin-associated factor X##AF222980|DISC1|27185|disrupted in schizophrenia 1##AJ506177|DISC1|27185|disrupted in schizophrenia 1##AJ506178|DISC1|27185|disrupted in schizophrenia 1##FJ804174|DISC1|27185|disrupted in schizophrenia 1##FJ804175|DISC1|27185|disrupted in schizophrenia 1##FJ804176|DISC1|27185|disrupted in schizophrenia 1##FJ804177|DISC1|27185|disrupted in schizophrenia 1##FJ804178|DISC1|27185|disrupted in schizophrenia 1##FJ804179|DISC1|27185|disrupted in schizophrenia 1##FJ804180|DISC1|27185|disrupted in schizophrenia 1##FJ804181|DISC1|27185|disrupted in schizophrenia 1##FJ804182|DISC1|27185|disrupted in schizophrenia 1##FJ804183|DISC1|27185|disrupted in schizophrenia 1##FJ804184|DISC1|27185|disrupted in schizophrenia 1##FJ804185|DISC1|27185|disrupted in schizophrenia 1##FJ804186|DISC1|27185|disrupted in schizophrenia 1##FJ804187|DISC1|27185|disrupted in schizophrenia 1##FJ804188|DISC1|27185|disrupted in schizophrenia 1##FJ804189|DISC1|27185|disrupted in schizophrenia 1##FJ804190|DISC1|27185|disrupted in schizophrenia 1##FJ804191|DISC1|27185|disrupted in schizophrenia 1##FJ804192|DISC1|27185|disrupted in schizophrenia 1##FJ804193|DISC1|27185|disrupted in schizophrenia 1##FJ804194|DISC1|27185|disrupted in schizophrenia 1##FJ804195|DISC1|27185|disrupted in schizophrenia 1##FJ804196|DISC1|27185|disrupted in schizophrenia 1##FJ804197|DISC1|27185|disrupted in schizophrenia 1##FJ804198|DISC1|27185|disrupted in schizophrenia 1##FJ804199|DISC1|27185|disrupted in schizophrenia 1##FJ804200|DISC1|27185|disrupted in schizophrenia 1##FJ804201|DISC1|27185|disrupted in schizophrenia 1##FJ804202|DISC1|27185|disrupted in schizophrenia 1##FJ804203|DISC1|27185|disrupted in schizophrenia 1##FJ804204|DISC1|27185|disrupted in schizophrenia 1##FJ804205|DISC1|27185|disrupted in schizophrenia 1##FJ804206|DISC1|27185|disrupted in schizophrenia 1##FJ804207|DISC1|27185|disrupted in schizophrenia 1##FJ804208|DISC1|27185|disrupted in schizophrenia 1##FJ804209|DISC1|27185|disrupted in schizophrenia 1##FJ804210|DISC1|27185|disrupted in schizophrenia 1##FJ804211|DISC1|27185|disrupted in schizophrenia 1##FJ804212|DISC1|27185|disrupted in schizophrenia 1##FJ804213|DISC1|27185|disrupted in schizophrenia 1##FJ804214|DISC1|27185|disrupted in schizophrenia 1##FJ804215|DISC1|27185|disrupted in schizophrenia 1##FJ804216|DISC1|27185|disrupted in schizophrenia 1##NM_001012957|DISC1|27185|disrupted in schizophrenia 1##NM_001012958|DISC1|27185|disrupted in schizophrenia 1##NM_001012959|DISC1|27185|disrupted in schizophrenia 1##NM_001164537|DISC1|27185|disrupted in schizophrenia 1##NM_001164538|DISC1|27185|disrupted in schizophrenia 1##NM_001164539|DISC1|27185|disrupted in schizophrenia 1##NM_001164540|DISC1|27185|disrupted in schizophrenia 1##NM_001164541|DISC1|27185|disrupted in schizophrenia 1##NM_001164542|DISC1|27185|disrupted in schizophrenia 1##NM_001164544|DISC1|27185|disrupted in schizophrenia 1##NM_001164545|DISC1|27185|disrupted in schizophrenia 1##NM_001164546|DISC1|27185|disrupted in schizophrenia 1##NM_001164547|DISC1|27185|disrupted in schizophrenia 1##NM_001164548|DISC1|27185|disrupted in schizophrenia 1##NM_001164549|DISC1|27185|disrupted in schizophrenia 1##NM_001164550|DISC1|27185|disrupted in schizophrenia 1##NM_001164551|DISC1|27185|disrupted in schizophrenia 1##NM_001164552|DISC1|27185|disrupted in schizophrenia 1##NM_001164553|DISC1|27185|disrupted in schizophrenia 1##NM_001164554|DISC1|27185|disrupted in schizophrenia 1##NM_001164555|DISC1|27185|disrupted in schizophrenia 1##NM_001164556|DISC1|27185|disrupted in schizophrenia 1##NM_018662|DISC1|27185|disrupted in schizophrenia 1##AB007926|DISC1|27185|disrupted in schizophrenia 1##BC151225|DISC1|27185|disrupted in schizophrenia 1##BC142622|DISC1|27185|disrupted in schizophrenia 1##BC038954|DISC1|27185|disrupted in schizophrenia 1	1.993499	0.0	
chr14	91476241	91476406	reg1008641.p2	4.086	+	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-193558	-	AB527232 TSC_hg19_v1_chr14_-_91282750	-193625	-	TSC_hg19_v1_chr14_+_90863372 BC011834 BC047523 U16851 BC000454 BC008597 AK289937 M27319	-612896	+	TSC_hg19_v1_chr14_-_91526731 CU677851	50431	-	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	50647	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	104082	+	NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##BC011834|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC047523|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##U16851|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC000454|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008597|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AK289937|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##M27319|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159	0.99967	0.0	denovo_WM_7:65:0.842
chr17	31155853	31156033	reg1000626.p2	4.086	+	TSC_hg19_v1_chr17_+_30814712 AK307275	-341183	+	X80343 BC026347 AB385577 CU676568 CU689012 BT019573 TSC_hg19_v1_chr17_+_30814643	-341346	+	TSC_hg19_v1_chr17_+_30813936 BC030792 NM_003885 BC020580	-341872	+	CU688936 AB385376 AB018270 BC146763 NM_015194	47952	-	TSC_hg19_v1_chr17_-_31204141 AK127942	48180	-	TSC_hg19_v1_chr17_-_31204196 BC030602	48270	-	X80343|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC026347|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BT019573|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC030792|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##NM_003885|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##BC020580|CDK5R1|8851|cyclin-dependent kinase 5, regulatory subunit 1 (p35)##AB018270|MYO1D|4642|myosin ID##BC146763|MYO1D|4642|myosin ID##NM_015194|MYO1D|4642|myosin ID##AK127942|MYO1D|4642|myosin ID##BC030602|MYO1D|4642|myosin ID	0.0	0.0	
chr5	90650812	90650941	reg1013665.p1	4.086	+	AK091866 TSC_hg19_v1_chr5_-_90610220	-40631	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	-796262	+	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	-825510	-	TSC_hg19_v1_chr5_+_90676181 BC043415	25286	+	BC015928 AB037797 BC053619 AK291753 TSC_hg19_v1_chr5_-_90679135 NM_020801	28256	-	AK311143 BC042879 TSC_hg19_v1_chr5_-_92916977 BC010610 BC018089 AK095719	2266087	-	AK091866|LOC100505994|100505994|uncharacterized LOC100505994##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC043415|LOC100129716|100129716|uncharacterized LOC100129716##BC015928|ARRDC3|57561|arrestin domain containing 3##AB037797|ARRDC3|57561|arrestin domain containing 3##BC053619|ARRDC3|57561|arrestin domain containing 3##AK291753|ARRDC3|57561|arrestin domain containing 3##NM_020801|ARRDC3|57561|arrestin domain containing 3##AK311143|FLJ42709|441094|uncharacterized LOC441094##BC042879|FLJ42709|441094|uncharacterized LOC441094##BC010610|FLJ42709|441094|uncharacterized LOC441094##BC018089|FLJ42709|441094|uncharacterized LOC441094##AK095719|FLJ42709|441094|uncharacterized LOC441094	1.75294	0.0	denovo_WM_7:-62:0.221	denovo_WM_7:-63:0.512
chr6	50984209	50984352	reg1018855.p1	4.086	+	NM_003221 BC037225 AK291172 AK313749 AB528472 X95694 DQ891443 DQ894621	-197745	+	AY028376 NM_172238	-303024	+	DQ012016 NM_001037498	-967917	-	AF480064 TSC_hg19_v1_chr6_-_51952394 AY092083 AY074797 NM_138694 NM_170724	968115	-	NM_002190 U32659 BC066251 BC066252 BC066253 BC067503 BC067504 BC067505 Z58820 AB590712 CU688116	1066926	+	AF384857 JF305974 AB590713 BC070124 NM_052872	1124981	-	NM_003221|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##BC037225|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK291172|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK313749|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##X95694|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ891443|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ894621|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AY028376|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##NM_172238|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##DQ012016|DEFB112|245915|defensin, beta 112##NM_001037498|DEFB112|245915|defensin, beta 112##AF480064|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY092083|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY074797|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_138694|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_170724|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_002190|IL17A|3605|interleukin 17A##U32659|IL17A|3605|interleukin 17A##BC066251|IL17A|3605|interleukin 17A##BC066252|IL17A|3605|interleukin 17A##BC066253|IL17A|3605|interleukin 17A##BC067503|IL17A|3605|interleukin 17A##BC067504|IL17A|3605|interleukin 17A##BC067505|IL17A|3605|interleukin 17A##Z58820|IL17A|3605|interleukin 17A##AF384857|IL17F|112744|interleukin 17F##JF305974|IL17F|112744|interleukin 17F##BC070124|IL17F|112744|interleukin 17F##NM_052872|IL17F|112744|interleukin 17F	0.99834	0.0	denovo_WM_7:-30:0.457	denovo_WM_7:-31:0.457
chr10	73656289	73656397	reg1016829.p1	4.085	+	TSC_hg19_v1_chr10_-_73611059 NM_001042465 NM_001042466 NM_002778	-45252	-	AK299184 TSC_hg19_v1_chr10_-_73611043	-45300	-	AK223290 AK293672 AK307721 TSC_hg19_v1_chr10_-_73611007 AK129790 J03077 AK057878 BC091483	-45326	-	TSC_hg19_v1_chr10_+_73723993 AB017915 NM_004273 AB012192	67714	+	AK292328 TSC_hg19_v1_chr10_-_73848270 AK294008 AK307091	191925	-	TSC_hg19_v1_chr10_-_73848286 AY358921	191939	-	NM_001042465|PSAP|5660|prosaposin##NM_001042466|PSAP|5660|prosaposin##NM_002778|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin##AK223290|PSAP|5660|prosaposin##AK293672|PSAP|5660|prosaposin##AK307721|PSAP|5660|prosaposin##AK129790|PSAP|5660|prosaposin##J03077|PSAP|5660|prosaposin##AK057878|PSAP|5660|prosaposin##BC091483|PSAP|5660|prosaposin##AB017915|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_004273|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##AB012192|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##AK292328|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK294008|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK307091|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AY358921|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	0.0	0.993242	CTCF.p2:-16:0.993
chr10	79369521	79369669	reg1011142.p2	4.085	+	AF267860 NM_032024	-1827077	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-2208030	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-2208114	-	AF118141 TSC_hg19_v1_chr10_-_79397246	27630	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	27741	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	27811	-	AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	0.914629	0.0	denovo_WM_7:-76:0.841
chr11	76802305	76802420	reg1011129.p1	4.085	+	TSC_hg19_v1_chr11_+_76778017 BC018123 NM_004055 AK128124 AK313132 AK310978 AK094150 AB209087	-24335	+	NM_138706 AK127544 AK292773 TSC_hg19_v1_chr11_+_76745441 AK313682 AK172863 BC103908 BC103909 BC103910	-56903	+	TSC_hg19_v1_chr11_+_76571985 AK308856 AK002100 AK316120 AK295327 AK295142 AK294978 BC049837 BC063034 AK293800 BC073853 CU687264	-230369	+	CU686775 BC069115 BC069365 NM_006189	11522	+	NM_000260 NM_001127179 U39226 NM_001127180 U34227 U55208 U55209 BC144519	36966	+	TSC_hg19_v1_chr11_+_76883833 BC023212	81486	+	BC018123|CAPN5|726|calpain 5##NM_004055|CAPN5|726|calpain 5##AK128124|CAPN5|726|calpain 5##AK313132|CAPN5|726|calpain 5##AK310978|CAPN5|726|calpain 5##AK094150|CAPN5|726|calpain 5##AB209087|CAPN5|726|calpain 5##NM_138706|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK127544|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK292773|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK313682|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK172863|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103908|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103909|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103910|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK308856|ACER3|55331|alkaline ceramidase 3##AK002100|ACER3|55331|alkaline ceramidase 3##AK316120|ACER3|55331|alkaline ceramidase 3##AK295327|ACER3|55331|alkaline ceramidase 3##AK295142|ACER3|55331|alkaline ceramidase 3##AK294978|ACER3|55331|alkaline ceramidase 3##BC049837|ACER3|55331|alkaline ceramidase 3##BC063034|ACER3|55331|alkaline ceramidase 3##AK293800|ACER3|55331|alkaline ceramidase 3##BC073853|ACER3|55331|alkaline ceramidase 3##BC069115|OMP|4975|olfactory marker protein##BC069365|OMP|4975|olfactory marker protein##NM_006189|OMP|4975|olfactory marker protein##NM_000260|MYO7A|4647|myosin VIIA##NM_001127179|MYO7A|4647|myosin VIIA##U39226|MYO7A|4647|myosin VIIA##NM_001127180|MYO7A|4647|myosin VIIA##U34227|MYO7A|4647|myosin VIIA##U55208|MYO7A|4647|myosin VIIA##U55209|MYO7A|4647|myosin VIIA##BC144519|MYO7A|4647|myosin VIIA##BC023212|MYO7A|4647|myosin VIIA	0.0	0.992285	CTCF.p2:17:0.992
chr12	27439976	27440087	reg1013878.p1	4.085	+	TSC_hg19_v1_chr12_+_27397225 AK304755	-42806	+	TSC_hg19_v1_chr12_+_27397187 AK291055	-42844	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	-42907	+	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	45848	+	BC043511 TSC_hg19_v1_chr12_-_27599649	159573	-	NM_001145010	179711	+	AK304755|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70	0.99834	0.0	denovo_WM_7:10:0.457	denovo_WM_7:11:0.457
chr15	57394759	57394860	reg1011158.p1	4.085	+	TSC_hg19_v1_chr15_+_57210977 M83233	-183809	+	TSC_hg19_v1_chr15_+_57210901 BC050556 BC051769 M80627	-183907	+	TSC_hg19_v1_chr15_+_57210872 AL831981 AK294617 AK310708 AK312710	-183941	+	TSC_hg19_v1_chr15_+_57511630 AK294991 AK304007 AK311359 AK308101 NM_207040 BX537967 AM393573	116858	+	AK056673 AK307410 NM_001252335 NM_032866 TSC_hg19_v1_chr15_+_57668732 AY274808 BC030995 AY610514	273908	+	BC101645 NM_001018090 NM_001018091 NM_001018100 NM_152451 BC112148 AK055535 FJ970029 AY207007 AY207459 AY208913 AY237639 AY331564 AY333779 AY334560 AY334561 AY334562 AY341345 AY353057 AY353058 AY353060	489356	+	M83233|TCF12|6938|transcription factor 12##BC050556|TCF12|6938|transcription factor 12##BC051769|TCF12|6938|transcription factor 12##M80627|TCF12|6938|transcription factor 12##AL831981|TCF12|6938|transcription factor 12##AK294617|TCF12|6938|transcription factor 12##AK310708|TCF12|6938|transcription factor 12##AK312710|TCF12|6938|transcription factor 12##AK294991|TCF12|6938|transcription factor 12##AK304007|TCF12|6938|transcription factor 12##AK311359|TCF12|6938|transcription factor 12##AK308101|TCF12|6938|transcription factor 12##NM_207040|TCF12|6938|transcription factor 12##BX537967|TCF12|6938|transcription factor 12##AM393573|TCF12|6938|transcription factor 12##AK056673|CGNL1|84952|cingulin-like 1##AK307410|CGNL1|84952|cingulin-like 1##NM_001252335|CGNL1|84952|cingulin-like 1##NM_032866|CGNL1|84952|cingulin-like 1##AY274808|CGNL1|84952|cingulin-like 1##BC030995|CGNL1|84952|cingulin-like 1##AY610514|CGNL1|84952|cingulin-like 1##BC101645|MYZAP|100820829|myocardial zonula adherens protein##NM_001018090|GCOM1|145781|GRINL1A complex locus 1##NM_001018091|GCOM1|145781|GRINL1A complex locus 1##NM_001018100|MYZAP|100820829|myocardial zonula adherens protein##NM_152451|MYZAP|100820829|myocardial zonula adherens protein##BC112148|MYZAP|100820829|myocardial zonula adherens protein##AK055535|MYZAP|100820829|myocardial zonula adherens protein##FJ970029|MYZAP|100820829|myocardial zonula adherens protein##AY207007|GCOM1|145781|GRINL1A complex locus 1##AY207459|MYZAP|100820829|myocardial zonula adherens protein##AY208913|GCOM1|145781|GRINL1A complex locus 1##AY237639|MYZAP|100820829|myocardial zonula adherens protein##AY331564|GCOM1|145781|GRINL1A complex locus 1##AY333779|GCOM1|145781|GRINL1A complex locus 1##AY334560|GCOM1|145781|GRINL1A complex locus 1##AY334561|GCOM1|145781|GRINL1A complex locus 1##AY334562|GCOM1|145781|GRINL1A complex locus 1##AY341345|GCOM1|145781|GRINL1A complex locus 1##AY353057|GCOM1|145781|GRINL1A complex locus 1##AY353058|GCOM1|145781|GRINL1A complex locus 1##AY353060|GCOM1|145781|GRINL1A complex locus 1	1.892256	0.0	denovo_WM_7:-3:0.425	denovo_WM_7:-4:0.425	denovo_WM_7:47:0.750
chr17_ctg5_hap1	632934	633064	reg1012611.p1	4.085	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr20	32991917	32992006	reg1010591.p1	4.085	+	TSC_hg19_v1_chr20_+_32951078 NM_031483 AK297809 AK304090 AK315212 BC011571 AB056663	-40869	+	AK097610 NM_001161766	-92354	-	BT006697 CU679982 DQ890569 DQ891701 DQ893730 DQ895397 TSC_hg19_v1_chr20_-_32891162 M61832 M61831 BC010018 BC011606 AK300014 AK316180 AK290422 AK309204 NM_000687	-100817	-	TSC_hg19_v1_chr20_+_33104226 NM_014183 AF132750 BC002481 AF161511 AK294214 AF165516	112255	+	NM_181509	142730	+	TSC_hg19_v1_chr20_+_33146525 NM_032514 AF276658 BC015810 AL833855 AB528175 BT007452 DQ893641 DQ895536 AM392590	154625	+	NM_031483|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK297809|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK304090|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK315212|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##BC011571|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AB056663|ITCH|83737|itchy E3 ubiquitin protein ligase homolog (mouse)##AK097610|AHCY|191|adenosylhomocysteinase##NM_001161766|AHCY|191|adenosylhomocysteinase##BT006697|AHCY|191|adenosylhomocysteinase##DQ890569|AHCY|191|adenosylhomocysteinase##DQ891701|AHCY|191|adenosylhomocysteinase##DQ893730|AHCY|191|adenosylhomocysteinase##DQ895397|AHCY|191|adenosylhomocysteinase##M61832|AHCY|191|adenosylhomocysteinase##M61831|AHCY|191|adenosylhomocysteinase##BC010018|AHCY|191|adenosylhomocysteinase##BC011606|AHCY|191|adenosylhomocysteinase##AK300014|AHCY|191|adenosylhomocysteinase##AK316180|AHCY|191|adenosylhomocysteinase##AK290422|AHCY|191|adenosylhomocysteinase##AK309204|AHCY|191|adenosylhomocysteinase##NM_000687|AHCY|191|adenosylhomocysteinase##NM_014183|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF132750|DYNLRB1|83658|dynein, light chain, roadblock-type 1##BC002481|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF161511|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AK294214|DYNLRB1|83658|dynein, light chain, roadblock-type 1##AF165516|DYNLRB1|83658|dynein, light chain, roadblock-type 1##NM_181509|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##NM_032514|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AF276658|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BC015810|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AL833855|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##BT007452|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ893641|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##DQ895536|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha##AM392590|MAP1LC3A|84557|microtubule-associated protein 1 light chain 3 alpha	0.904405	0.0	denovo_WM_7:62:0.329	denovo_WM_7:65:0.376
chr3	196167249	196167330	reg1010001.p1	4.085	+	TSC_hg19_v1_chr3_-_196159304 NM_015562	-7956	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	-7990	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	-8006	-	TSC_hg19_v1_chr3_-_196230640 BC017442 BC033791 AK054732 NM_152617	63289	-	AK291522 BC118556 BC118636 AL833140 AL833443 AK123917 NM_001077657	74924	-	TSC_hg19_v1_chr3_-_196295401 BC054030 EF011620 NM_182627 AK314105	128101	-	NM_015562|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##BC017442|RNF168|165918|ring finger protein 168##BC033791|RNF168|165918|ring finger protein 168##AK054732|RNF168|165918|ring finger protein 168##NM_152617|RNF168|165918|ring finger protein 168##AK291522|C3orf43|255798|chromosome 3 open reading frame 43##BC118556|C3orf43|255798|chromosome 3 open reading frame 43##BC118636|C3orf43|255798|chromosome 3 open reading frame 43##AL833140|C3orf43|255798|chromosome 3 open reading frame 43##AL833443|C3orf43|255798|chromosome 3 open reading frame 43##AK123917|C3orf43|255798|chromosome 3 open reading frame 43##NM_001077657|C3orf43|255798|chromosome 3 open reading frame 43##BC054030|WDR53|348793|WD repeat domain 53##EF011620|WDR53|348793|WD repeat domain 53##NM_182627|WDR53|348793|WD repeat domain 53##AK314105|WDR53|348793|WD repeat domain 53	0.86437	0.0	denovo_WM_7:43:0.397	denovo_WM_7:44:0.394
chr5	42993891	42994015	reg1001085.p2	4.085	+	TSC_hg19_v1_chr5_-_42993436 AK056817	-507	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-181962	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-237015	+	AB463523 BC067873 AY032883 NM_001014279	46343	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	127048	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	127661	+	AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131	0.0	0.0	
chr8	12358691	12358816	reg1013218.p1	4.085	+	BC085016 TSC_hg19_v1_chr8_-_12293910 AK291001 AK298940	-64849	-	AK309984 NM_001137610 AK098138 AK308513 TSC_hg19_v1_chr8_-_12293868 AK297741 AK308439	-64910	-	DQ012022 NM_001037804 NM_001195257	-182929	-	TSC_hg19_v1_chr8_-_12612974 NM_152271	254251	-	AK296010 NM_020844	444413	+	AB040889 NM_001099677	511019	+	BC085016|FAM86B1|85002|family with sequence similarity 86, member B1##AK291001|FAM86B2|653333|family with sequence similarity 86, member B2##AK298940|FAM86B2|653333|family with sequence similarity 86, member B2##AK309984|FAM86B2|653333|family with sequence similarity 86, member B2##NM_001137610|FAM86B2|653333|family with sequence similarity 86, member B2##AK098138|FAM86B1|85002|family with sequence similarity 86, member B1##AK308513|FAM86B1|85002|family with sequence similarity 86, member B1##AK297741|FAM86B2|653333|family with sequence similarity 86, member B2##AK308439|FAM86B1|85002|family with sequence similarity 86, member B1##DQ012022|DEFB130|245940|defensin, beta 130##NM_001037804|DEFB130|245940|defensin, beta 130##NM_001195257|LOC100133267|100133267|defensin, beta 130-like##NM_152271|LONRF1|91694|LON peptidase N-terminal domain and ring finger 1##AK296010|KIAA1456|57604|KIAA1456##NM_020844|KIAA1456|57604|KIAA1456##AB040889|KIAA1456|57604|KIAA1456##NM_001099677|KIAA1456|57604|KIAA1456	1.680475	0.0	denovo_WM_7:-100:0.583
chrX	68586306	68586404	reg1012501.p2	4.085	+	TSC_hg19_v1_chrX_-_68385297 AK290543 AK226171 BC075803 AF264620 AK293266 AK294632 AK096611 NM_001032396 NM_022368 NM_145119	-201049	-	TSC_hg19_v1_chrX_+_68048863 BC052979 BC016649 NM_004429 AK311197 U09303	-537500	+	TSC_hg19_v1_chrX_+_67913490 D80011	-672864	+	AF087142 NM_015686 BC136518 BC136519	138728	+	AF040628 AF060999 AF061189 AF061190 AF061191 AF061192 AF061193 AF061194 NM_001005609 NM_001005610 NM_001005612 NM_001005613 NM_001399 U59228 BC126143 BC144049 BC144051	249580	+	AB528121 AY605053 NM_001002254	683429	-	AK290543|PJA1|64219|praja ring finger 1##AK226171|PJA1|64219|praja ring finger 1##BC075803|PJA1|64219|praja ring finger 1##AF264620|PJA1|64219|praja ring finger 1##AK293266|PJA1|64219|praja ring finger 1##AK294632|PJA1|64219|praja ring finger 1##AK096611|PJA1|64219|praja ring finger 1##NM_001032396|PJA1|64219|praja ring finger 1##NM_022368|PJA1|64219|praja ring finger 1##NM_145119|PJA1|64219|praja ring finger 1##BC052979|EFNB1|1947|ephrin-B1##BC016649|EFNB1|1947|ephrin-B1##NM_004429|EFNB1|1947|ephrin-B1##U09303|EFNB1|1947|ephrin-B1##D80011|STARD8|9754|StAR-related lipid transfer (START) domain containing 8##AF087142|FAM155B|27112|family with sequence similarity 155, member B##NM_015686|FAM155B|27112|family with sequence similarity 155, member B##BC136518|FAM155B|27112|family with sequence similarity 155, member B##BC136519|FAM155B|27112|family with sequence similarity 155, member B##AF040628|EDA|1896|ectodysplasin A##AF060999|EDA|1896|ectodysplasin A##AF061189|EDA|1896|ectodysplasin A##AF061190|EDA|1896|ectodysplasin A##AF061191|EDA|1896|ectodysplasin A##AF061192|EDA|1896|ectodysplasin A##AF061193|EDA|1896|ectodysplasin A##AF061194|EDA|1896|ectodysplasin A##NM_001005609|EDA|1896|ectodysplasin A##NM_001005610|EDA|1896|ectodysplasin A##NM_001005612|EDA|1896|ectodysplasin A##NM_001005613|EDA|1896|ectodysplasin A##NM_001399|EDA|1896|ectodysplasin A##U59228|EDA|1896|ectodysplasin A##BC126143|EDA|1896|ectodysplasin A##BC144049|EDA|1896|ectodysplasin A##BC144051|EDA|1896|ectodysplasin A##AY605053|AWAT2|158835|acyl-CoA wax alcohol acyltransferase 2##NM_001002254|AWAT2|158835|acyl-CoA wax alcohol acyltransferase 2	0.998175	0.0	denovo_WM_7:-5:0.719
chr10	29924936	29925116	reg1014246.p1	4.084	+	AF109135 NM_021738 TSC_hg19_v1_chr10_-_29923901	-1119	-	TSC_hg19_v1_chr10_-_29923841 BC057241 BC070247	-1165	-	BX648589 TSC_hg19_v1_chr10_-_29754623	-170475	-	TSC_hg19_v1_chr10_-_30024866 AF051850 NM_003174	99738	-	TSC_hg19_v1_chr10_-_30025865 AK307640	100880	-	TSC_hg19_v1_chr10_-_30316350 BC047548	391405	-	AF109135|SVIL|6840|supervillin##NM_021738|SVIL|6840|supervillin##BX648589|SVIL|6840|supervillin##AF051850|SVIL|6840|supervillin##NM_003174|SVIL|6840|supervillin##AK307640|SVIL|6840|supervillin##BC047548|KIAA1462|57608|KIAA1462	0.996303	0.0	denovo_WM_7:13:0.835
chr1	8299113	8299214	reg1014460.p2	4.084	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-212765	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-212802	-	AB528431 AJ276373 DQ892137 DQ895331 BC012839 TSC_hg19_v1_chr1_-_8075752	-223448	-	NM_001080397	85226	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	184854	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	578429	-	NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AJ276373|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ892137|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ895331|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC012839|ERRFI1|54206|ERBB receptor feedback inhibitor 1##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats	0.998185	0.0	
chr20	10269449	10269544	reg1012944.p2	4.084	+	TSC_hg19_v1_chr20_-_10200139 AK124961	-69353	-	TSC_hg19_v1_chr20_+_10199575 NM_003081 NM_130811 AK094560 AK098347 D21267 AK223617 AK314359 AK289647 BC010647 BX647443 AK098767 L19760 L19761	-69969	+	NM_022096 NM_198798 AK097689 TSC_hg19_v1_chr20_+_10015744 BC022878 BC028189 BC011591	-253764	+	AF221993 NM_018848	143073	-	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	145343	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	146480	+	AK124961|LOC100131208|100131208|uncharacterized LOC100131208##NM_003081|SNAP25|6616|synaptosomal-associated protein, 25kDa##NM_130811|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK094560|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK098347|SNAP25|6616|synaptosomal-associated protein, 25kDa##D21267|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK223617|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK314359|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK289647|SNAP25|6616|synaptosomal-associated protein, 25kDa##BC010647|SNAP25|6616|synaptosomal-associated protein, 25kDa##BX647443|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK098767|SNAP25|6616|synaptosomal-associated protein, 25kDa##L19760|SNAP25|6616|synaptosomal-associated protein, 25kDa##L19761|SNAP25|6616|synaptosomal-associated protein, 25kDa##NM_022096|ANKRD5|63926|ankyrin repeat domain 5##NM_198798|ANKRD5|63926|ankyrin repeat domain 5##AK097689|ANKRD5|63926|ankyrin repeat domain 5##BC022878|ANKRD5|63926|ankyrin repeat domain 5##BC028189|ANKRD5|63926|ankyrin repeat domain 5##BC011591|ANKRD5|63926|ankyrin repeat domain 5##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94	0.998964	0.0	denovo_WM_7:-17:0.462	denovo_WM_7:-18:0.518
chr22	18447853	18448033	reg1015488.p2	4.084	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-190609	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-190720	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-190736	-	TSC_hg19_v1_chr22_-_18484268 AK127487	36285	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	59318	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	112745	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.998505	0.0	
chr22	38003224	38003310	reg1002638.p1	4.084	+	M87842 BC059782 NM_006498 CR456512	-27267	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-46794	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-87960	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	1295	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	1503	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	1616	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	0.0	0.502658	CTCF.p2:-33:0.503
chr2	98448029	98448167	reg1012329.p2	4.084	+	AK025852 TSC_hg19_v1_chr2_-_98408976	-39176	-	AB083211 NM_207519	-97230	+	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	-118056	+	AK297450 TSC_hg19_v1_chr2_-_98612338 NM_015348	164088	-	TSC_hg19_v1_chr2_-_98612395 AK098792	164305	-	NM_144992 AL832761 BC095480 TSC_hg19_v1_chr2_+_98703652 AK292397 AK057248 AL832635 BC150653 AK302390 BC026091	255548	+	AK025852|TMEM131|23505|transmembrane protein 131##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK297450|TMEM131|23505|transmembrane protein 131##NM_015348|TMEM131|23505|transmembrane protein 131##AK098792|TMEM131|23505|transmembrane protein 131##NM_144992|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832761|VWA3B|200403|von Willebrand factor A domain containing 3B##BC095480|VWA3B|200403|von Willebrand factor A domain containing 3B##AK292397|VWA3B|200403|von Willebrand factor A domain containing 3B##AK057248|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832635|VWA3B|200403|von Willebrand factor A domain containing 3B##BC150653|VWA3B|200403|von Willebrand factor A domain containing 3B##AK302390|VWA3B|200403|von Willebrand factor A domain containing 3B##BC026091|VWA3B|200403|von Willebrand factor A domain containing 3B	0.995473	0.0	
chr16	19812572	19812684	reg1015017.p1	4.083	+	TSC_hg19_v1_chr16_-_19729532 BC117562 NM_001012991	-83141	-	TSC_hg19_v1_chr16_+_19727698 AF520569 AF520570 AK000122 NM_153208	-84891	+	TSC_hg19_v1_chr16_+_19567045 BX537867 AK095078 AK290286 AL832159 BC058845 AL833428 EU831926 EU832021	-245592	+	AK295204 AF202640 TSC_hg19_v1_chr16_-_19896168 BC034467 AF181862 NM_016235 AK294680 AK075119 AK315989 AK296754	83536	-	AB196529 AY635179 BC137237 BC137238 BC144547 NM_001002911 AK291384	272459	-	U36221 AK312277 BX647831 BX648201 BX649067 BX648023 NM_001007240 NM_001007241 NM_001007242 NM_001502 CR749600	526225	-	BC117562|C16orf88|400506|chromosome 16 open reading frame 88##NM_001012991|C16orf88|400506|chromosome 16 open reading frame 88##AF520569|IQCK|124152|IQ motif containing K##AF520570|IQCK|124152|IQ motif containing K##AK000122|IQCK|124152|IQ motif containing K##NM_153208|IQCK|124152|IQ motif containing K##BX537867|C16orf62|57020|chromosome 16 open reading frame 62##AK095078|C16orf62|57020|chromosome 16 open reading frame 62##AK290286|C16orf62|57020|chromosome 16 open reading frame 62##AL832159|C16orf62|57020|chromosome 16 open reading frame 62##BC058845|C16orf62|57020|chromosome 16 open reading frame 62##AL833428|C16orf62|57020|chromosome 16 open reading frame 62##EU831926|C16orf62|57020|chromosome 16 open reading frame 62##EU832021|C16orf62|57020|chromosome 16 open reading frame 62##AK295204|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AF202640|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##BC034467|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AF181862|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##NM_016235|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK294680|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK075119|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK315989|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AK296754|GPRC5B|51704|G protein-coupled receptor, family C, group 5, member B##AB196529|GPR139|124274|G protein-coupled receptor 139##AY635179|GPR139|124274|G protein-coupled receptor 139##BC137237|GPR139|124274|G protein-coupled receptor 139##BC137238|GPR139|124274|G protein-coupled receptor 139##NM_001002911|GPR139|124274|G protein-coupled receptor 139##AK291384|GPR139|124274|G protein-coupled receptor 139##U36221|GP2|2813|glycoprotein 2 (zymogen granule membrane)##AK312277|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX647831|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX648201|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX649067|GP2|2813|glycoprotein 2 (zymogen granule membrane)##BX648023|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001007240|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001007241|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001007242|GP2|2813|glycoprotein 2 (zymogen granule membrane)##NM_001502|GP2|2813|glycoprotein 2 (zymogen granule membrane)##CR749600|GP2|2813|glycoprotein 2 (zymogen granule membrane)	0.998919	0.0	denovo_WM_7:4:0.418	denovo_WM_7:5:0.418
chr18	21197443	21197567	reg1014244.p2	4.083	+	TSC_hg19_v1_chr18_-_21166458 AK295715 NM_000271	-30995	-	TSC_hg19_v1_chr18_-_21166428 BC063302 AF002020	-31097	-	TSC_hg19_v1_chr18_+_21083474 NM_013326 AK057192 AK295246 AK296230 AK294169 BC008305 BC002950	-114031	+	TSC_hg19_v1_chr18_-_21242592 CU688952 AK313667 AK057782 BC030622 NM_173505	45215	-	TSC_hg19_v1_chr18_+_21269416 AK096422	71909	+	TSC_hg19_v1_chr18_+_21269563 BC093406 NM_001127717 NM_198129 AY327115 AY327116	72082	+	AK295715|NPC1|4864|Niemann-Pick disease, type C1##NM_000271|NPC1|4864|Niemann-Pick disease, type C1##BC063302|NPC1|4864|Niemann-Pick disease, type C1##AF002020|NPC1|4864|Niemann-Pick disease, type C1##NM_013326|C18orf8|29919|chromosome 18 open reading frame 8##AK057192|C18orf8|29919|chromosome 18 open reading frame 8##AK295246|C18orf8|29919|chromosome 18 open reading frame 8##AK296230|C18orf8|29919|chromosome 18 open reading frame 8##AK294169|C18orf8|29919|chromosome 18 open reading frame 8##BC008305|C18orf8|29919|chromosome 18 open reading frame 8##BC002950|C18orf8|29919|chromosome 18 open reading frame 8##AK313667|ANKRD29|147463|ankyrin repeat domain 29##AK057782|ANKRD29|147463|ankyrin repeat domain 29##BC030622|ANKRD29|147463|ankyrin repeat domain 29##NM_173505|ANKRD29|147463|ankyrin repeat domain 29##AK096422|LAMA3|3909|laminin, alpha 3##BC093406|LAMA3|3909|laminin, alpha 3##NM_001127717|LAMA3|3909|laminin, alpha 3##NM_198129|LAMA3|3909|laminin, alpha 3##AY327115|LAMA3|3909|laminin, alpha 3##AY327116|LAMA3|3909|laminin, alpha 3	0.476219	0.0	denovo_WM_7:-37:0.297
chr18	32090282	32090462	reg1000946.p2	4.083	+	AJ009668 TSC_hg19_v1_chr18_+_32073374	-17009	+	TSC_hg19_v1_chr18_+_32073264 NM_001198945 NM_001392 NM_032975 NM_032979 AK294746 U26742	-17108	+	AB017800 NM_001198546 NM_001198548 NM_003787	-286858	-	NM_001128175 NM_001198938 NM_001198939 NM_001198940 AK308410 AL833285 BC005300 AB209102	82932	+	NM_001198941 NM_032978 TSC_hg19_v1_chr18_+_32290229 AK291156	199874	+	NM_001390 NM_001391 AB463020 BT006937 EU831587 EU831619 EU831672 EU831705	245567	+	AJ009668|DTNA|1837|dystrobrevin, alpha##NM_001198945|DTNA|1837|dystrobrevin, alpha##NM_001392|DTNA|1837|dystrobrevin, alpha##NM_032975|DTNA|1837|dystrobrevin, alpha##NM_032979|DTNA|1837|dystrobrevin, alpha##AK294746|DTNA|1837|dystrobrevin, alpha##U26742|DTNA|1837|dystrobrevin, alpha##AB017800|NOL4|8715|nucleolar protein 4##NM_001198546|NOL4|8715|nucleolar protein 4##NM_001198548|NOL4|8715|nucleolar protein 4##NM_003787|NOL4|8715|nucleolar protein 4##NM_001128175|DTNA|1837|dystrobrevin, alpha##NM_001198938|DTNA|1837|dystrobrevin, alpha##NM_001198939|DTNA|1837|dystrobrevin, alpha##NM_001198940|DTNA|1837|dystrobrevin, alpha##AK308410|DTNA|1837|dystrobrevin, alpha##AL833285|DTNA|1837|dystrobrevin, alpha##BC005300|DTNA|1837|dystrobrevin, alpha##AB209102|DTNA|1837|dystrobrevin, alpha##NM_001198941|DTNA|1837|dystrobrevin, alpha##NM_032978|DTNA|1837|dystrobrevin, alpha##AK291156|DTNA|1837|dystrobrevin, alpha##NM_001390|DTNA|1837|dystrobrevin, alpha##NM_001391|DTNA|1837|dystrobrevin, alpha##BT006937|DTNA|1837|dystrobrevin, alpha##EU831587|DTNA|1837|dystrobrevin, alpha##EU831619|DTNA|1837|dystrobrevin, alpha##EU831672|DTNA|1837|dystrobrevin, alpha##EU831705|DTNA|1837|dystrobrevin, alpha	0.0	0.0	
chr22	26518996	26519062	reg1009608.p1	4.083	+	TSC_hg19_v1_chr22_+_26138168 AY077700	-380845	+	AB075376 TSC_hg19_v1_chr22_+_26138129 AJ310931 NM_032608	-380909	+	TSC_hg19_v1_chr22_+_25960925 BC021221 AK292234 AK310398 AK058103 CU691422 X69117	-558083	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	46408	+	TSC_hg19_v1_chr22_+_26565455 AB023144 BC126115 BC143851 BC143854	46468	+	CR456574 CU013173 CU013461 AB041736 TSC_hg19_v1_chr22_+_26565704	46634	+	AY077700|MYO18B|84700|myosin XVIIIB##AB075376|MYO18B|84700|myosin XVIIIB##AJ310931|MYO18B|84700|myosin XVIIIB##NM_032608|MYO18B|84700|myosin XVIIIB##BC021221|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK292234|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK310398|ADRBK2|157|adrenergic, beta, receptor kinase 2##AK058103|ADRBK2|157|adrenergic, beta, receptor kinase 2##X69117|ADRBK2|157|adrenergic, beta, receptor kinase 2##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB023144|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC126115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143851|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143854|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CR456574|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013173|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013461|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB041736|SEZ6L|23544|seizure related 6 homolog (mouse)-like	0.0	0.0	
chr2	228665987	228666131	reg1014236.p1	4.083	+	AF271633 BC032014 AK301490 AF283317 AK312464 NM_025243	-83338	-	AM393148 AM393273 BC131618 AL359944 CR749679 AK055355 NM_001162483 NM_020161	-168141	-	TSC_hg19_v1_chr2_+_228356287 AK295030	-309768	+	TSC_hg19_v1_chr2_+_228678557 BC020698 NM_001130046 NM_004591 D86955 U64197 DQ891973 DQ896841 AB590447 U77035	12532	+	AK097409 NM_178821 BC036377 AK098821 AK301861	70293	+	HQ258692 CR749494 TSC_hg19_v1_chr2_-_229046343 BC104954 BC104956 BC143408 NM_001142644 NM_030623 AK127071	380303	-	AF271633|SLC19A3|80704|solute carrier family 19, member 3##BC032014|SLC19A3|80704|solute carrier family 19, member 3##AK301490|SLC19A3|80704|solute carrier family 19, member 3##AF283317|SLC19A3|80704|solute carrier family 19, member 3##AK312464|SLC19A3|80704|solute carrier family 19, member 3##NM_025243|SLC19A3|80704|solute carrier family 19, member 3##AM393148|C2orf83|56918|chromosome 2 open reading frame 83##AM393273|C2orf83|56918|chromosome 2 open reading frame 83##BC131618|C2orf83|56918|chromosome 2 open reading frame 83##AL359944|C2orf83|56918|chromosome 2 open reading frame 83##CR749679|C2orf83|56918|chromosome 2 open reading frame 83##AK055355|C2orf83|56918|chromosome 2 open reading frame 83##NM_001162483|C2orf83|56918|chromosome 2 open reading frame 83##NM_020161|C2orf83|56918|chromosome 2 open reading frame 83##AK295030|AGFG1|3267|ArfGAP with FG repeats 1##BC020698|CCL20|6364|chemokine (C-C motif) ligand 20##NM_001130046|CCL20|6364|chemokine (C-C motif) ligand 20##NM_004591|CCL20|6364|chemokine (C-C motif) ligand 20##D86955|CCL20|6364|chemokine (C-C motif) ligand 20##U64197|CCL20|6364|chemokine (C-C motif) ligand 20##DQ891973|CCL20|6364|chemokine (C-C motif) ligand 20##DQ896841|CCL20|6364|chemokine (C-C motif) ligand 20##U77035|CCL20|6364|chemokine (C-C motif) ligand 20##AK097409|WDR69|164781|WD repeat domain 69##NM_178821|WDR69|164781|WD repeat domain 69##BC036377|WDR69|164781|WD repeat domain 69##AK098821|WDR69|164781|WD repeat domain 69##AK301861|WDR69|164781|WD repeat domain 69##HQ258692|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##CR749494|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104954|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC104956|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##BC143408|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_001142644|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##NM_030623|SPHKAP|80309|SPHK1 interactor, AKAP domain containing##AK127071|SPHKAP|80309|SPHK1 interactor, AKAP domain containing	0.996443	0.0	
chr3	171000017	171000143	reg1012573.p1	4.083	+	NM_000340	-255313	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-255547	-	AB528020 J03810 TSC_hg19_v1_chr3_-_170744510 AK313622 BC060041 AK290846 AK292741	-255590	-	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	177991	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	528175	-	NM_001164436 AK026825	561068	+	NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##J03810|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK313622|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##BC060041|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK290846|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK292741|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212	0.976044	0.0	denovo_WM_7:58:0.325	denovo_WM_7:59:0.325	denovo_WM_7:60:0.325
chr7	74034926	74035059	reg1014337.p1	4.083	+	TSC_hg19_v1_chr7_+_73868413 AF156489 AF118270 AF104923	-166557	+	TSC_hg19_v1_chr7_+_73868257 AY648295 BC018136	-166684	+	TSC_hg19_v1_chr7_+_73868185 AF151354 NM_001199207 NM_005685 NM_016328	-166828	+	AK292832 TSC_hg19_v1_chr7_+_74072028 AF015553 NM_001163636 NM_001518 NM_032999 NM_033000 NM_033001	37029	+	TSC_hg19_v1_chr7_+_74072046 BC070484	37052	+	TSC_hg19_v1_chr7_+_74072057 BC099907 AK294935 AF035737 AF038967 AF038968 AF038969	37130	+	AF156489|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF118270|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF104923|GTF2IRD1|9569|GTF2I repeat domain containing 1##AY648295|GTF2IRD1|9569|GTF2I repeat domain containing 1##BC018136|GTF2IRD1|9569|GTF2I repeat domain containing 1##AF151354|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_001199207|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_005685|GTF2IRD1|9569|GTF2I repeat domain containing 1##NM_016328|GTF2IRD1|9569|GTF2I repeat domain containing 1##AK292832|GTF2I|2969|general transcription factor IIi##AF015553|GTF2I|2969|general transcription factor IIi##NM_001163636|GTF2I|2969|general transcription factor IIi##NM_001518|GTF2I|2969|general transcription factor IIi##NM_032999|GTF2I|2969|general transcription factor IIi##NM_033000|GTF2I|2969|general transcription factor IIi##NM_033001|GTF2I|2969|general transcription factor IIi##BC070484|GTF2I|2969|general transcription factor IIi##BC099907|GTF2I|2969|general transcription factor IIi##AK294935|GTF2I|2969|general transcription factor IIi##AF035737|GTF2I|2969|general transcription factor IIi##AF038967|GTF2I|2969|general transcription factor IIi##AF038968|GTF2I|2969|general transcription factor IIi##AF038969|GTF2I|2969|general transcription factor IIi	1.996942	0.0	denovo_WM_7:54:0.200	denovo_WM_7:57:0.400
chr8	82009868	82010024	reg1016605.p2	4.083	+	AK131274 NM_001033723	-222931	-	TSC_hg19_v1_chr8_+_81398464 AJ319673 NM_001105539 NM_023929 BC127097 BC127098 BC148254	-611462	+	TSC_hg19_v1_chr8_-_81083773 BT019444 CR542034 CR542064 CU676182 DQ891032 DQ894211 AK313135 AK295468 BC018117 U18914 S82081 AK223631 NM_001025253 NM_005079	-926176	-	TSC_hg19_v1_chr8_-_82024304 AK289818 NM_018440	14368	-	NM_001444 TSC_hg19_v1_chr8_+_82192768 AK226036 AK311856 BC070303 BC019385 M94856 DQ891285 DQ894470 BT007449	182827	+	AB528466 CR541649 CR541738 DQ891506 DQ891507 DQ894697 X62167 AK307118 AK311758 BC034997 NM_002677	349723	-	AK131274|ZNF704|619279|zinc finger protein 704##NM_001033723|ZNF704|619279|zinc finger protein 704##AJ319673|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_001105539|ZBTB10|65986|zinc finger and BTB domain containing 10##NM_023929|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127097|ZBTB10|65986|zinc finger and BTB domain containing 10##BC127098|ZBTB10|65986|zinc finger and BTB domain containing 10##BC148254|ZBTB10|65986|zinc finger and BTB domain containing 10##BT019444|TPD52|7163|tumor protein D52##CR542034|TPD52|7163|tumor protein D52##CR542064|TPD52|7163|tumor protein D52##DQ891032|TPD52|7163|tumor protein D52##DQ894211|TPD52|7163|tumor protein D52##AK313135|TPD52|7163|tumor protein D52##AK295468|TPD52|7163|tumor protein D52##BC018117|TPD52|7163|tumor protein D52##U18914|TPD52|7163|tumor protein D52##S82081|TPD52|7163|tumor protein D52##AK223631|TPD52|7163|tumor protein D52##NM_001025253|TPD52|7163|tumor protein D52##NM_005079|TPD52|7163|tumor protein D52##AK289818|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_018440|PAG1|55824|phosphoprotein associated with glycosphingolipid microdomains 1##NM_001444|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK226036|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##AK311856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC070303|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BC019385|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##M94856|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ891285|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##DQ894470|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##BT007449|FABP5|2171|fatty acid binding protein 5 (psoriasis-associated)##CR541649|PMP2|5375|peripheral myelin protein 2##CR541738|PMP2|5375|peripheral myelin protein 2##DQ891506|PMP2|5375|peripheral myelin protein 2##DQ891507|PMP2|5375|peripheral myelin protein 2##DQ894697|PMP2|5375|peripheral myelin protein 2##X62167|PMP2|5375|peripheral myelin protein 2##AK307118|PMP2|5375|peripheral myelin protein 2##AK311758|PMP2|5375|peripheral myelin protein 2##BC034997|PMP2|5375|peripheral myelin protein 2##NM_002677|PMP2|5375|peripheral myelin protein 2	0.997933	0.0	denovo_WM_7:7:0.719
chr12	120666253	120666398	reg1013993.p1	4.082	+	AK001313 AK129823 M17885 TSC_hg19_v1_chr12_-_120638914 NM_001002 NM_053275	-27363	-	AK129754 AK222571 AK304674 BC107717 D28418 TSC_hg19_v1_chr12_-_120638911 AK222468 AK291109	-27415	-	BC019014 BC000087 TSC_hg19_v1_chr12_-_120638906 BC070194	-27424	-	BX648777 NM_025157	21634	-	TSC_hg19_v1_chr12_-_120703534 AK299486 BC136787 BC136794 BC144410 U14588 AB209034 AK298057 AK314204	37189	-	TSC_hg19_v1_chr12_-_120703574 NM_001080855 NM_001243756 NM_002859	37265	-	AK001313|RPLP0|6175|ribosomal protein, large, P0##AK129823|RPLP0|6175|ribosomal protein, large, P0##M17885|RPLP0|6175|ribosomal protein, large, P0##NM_001002|RPLP0|6175|ribosomal protein, large, P0##NM_053275|RPLP0|6175|ribosomal protein, large, P0##AK129754|RPLP0|6175|ribosomal protein, large, P0##AK222571|RPLP0|6175|ribosomal protein, large, P0##AK304674|RPLP0|6175|ribosomal protein, large, P0##BC107717|RPLP0|6175|ribosomal protein, large, P0##D28418|RPLP0|6175|ribosomal protein, large, P0##AK222468|RPLP0|6175|ribosomal protein, large, P0##AK291109|RPLP0|6175|ribosomal protein, large, P0##BC019014|RPLP0|6175|ribosomal protein, large, P0##BC000087|RPLP0|6175|ribosomal protein, large, P0##BC070194|RPLP0|6175|ribosomal protein, large, P0##BX648777|PXN|5829|paxillin##NM_025157|PXN|5829|paxillin##AK299486|PXN|5829|paxillin##BC136787|PXN|5829|paxillin##BC136794|PXN|5829|paxillin##BC144410|PXN|5829|paxillin##U14588|PXN|5829|paxillin##AB209034|PXN|5829|paxillin##AK298057|PXN|5829|paxillin##AK314204|PXN|5829|paxillin##NM_001080855|PXN|5829|paxillin##NM_001243756|PXN|5829|paxillin##NM_002859|PXN|5829|paxillin	0.0	0.996832	CTCF.p2:-4:0.997
chr14	60431879	60432059	reg1001921.p1	4.082	+	AB587373 TSC_hg19_v1_chr14_-_60337495 BC111694 L10333 BC090862 BC068510 NM_021136	-94516	-	AK290534 NM_206852 TSC_hg19_v1_chr14_-_60097533	-334436	-	TSC_hg19_v1_chr14_-_60097342 BC000314 BC003003 AK297492	-334625	-	NM_022495 TSC_hg19_v1_chr14_+_60558640 AK095489	126858	+	AY359031 TSC_hg19_v1_chr14_-_60632031 BC000637	200063	-	TSC_hg19_v1_chr14_-_60632103 BC007337 AF151844 AK313285 AL117420 NM_016029	200165	-	BC111694|RTN1|6252|reticulon 1##L10333|RTN1|6252|reticulon 1##BC090862|RTN1|6252|reticulon 1##BC068510|RTN1|6252|reticulon 1##NM_021136|RTN1|6252|reticulon 1##AK290534|RTN1|6252|reticulon 1##NM_206852|RTN1|6252|reticulon 1##BC000314|RTN1|6252|reticulon 1##BC003003|RTN1|6252|reticulon 1##AK297492|RTN1|6252|reticulon 1##NM_022495|C14orf135|64430|chromosome 14 open reading frame 135##AK095489|C14orf135|64430|chromosome 14 open reading frame 135##AY359031|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##BC000637|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##BC007337|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AF151844|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AK313285|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AL117420|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##NM_016029|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7	0.0	0.730148	CTCF.p2:-51:0.730
chr15	28658206	28658355	reg1009011.p1	4.082	+	AF071172 BC015486 BC142951 BC045544 NM_004667	-91009	-	M99564 TSC_hg19_v1_chr15_-_28344462 BC012097 NM_000275	-313847	-	NM_033223 BC029850 BC045709 S82769	-1441733	+	TSC_hg19_v1_chr15_+_29033278 AK302529	375043	+	TSC_hg19_v1_chr15_+_29077475 BC018626	419202	+	NM_001130414 NM_005503 AF047348 BC082986	555569	+	AF071172|HERC2|8924|hect domain and RLD 2##BC015486|HERC2|8924|hect domain and RLD 2##BC142951|HERC2|8924|hect domain and RLD 2##BC045544|HERC2|8924|hect domain and RLD 2##NM_004667|HERC2|8924|hect domain and RLD 2##M99564|OCA2|4948|oculocutaneous albinism II##BC012097|OCA2|4948|oculocutaneous albinism II##NM_000275|OCA2|4948|oculocutaneous albinism II##NM_033223|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##BC029850|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##BC045709|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##S82769|GABRG3|2567|gamma-aminobutyric acid (GABA) A receptor, gamma 3##AK302529|LOC100289656|100289656|Dexi homolog (mouse) pseudogene##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2	2.031828	0.0	denovo_WM_7:60:0.326	denovo_WM_7:75:0.318	denovo_WM_7:76:0.326	denovo_WM_7:-99:0.723
chr3	112051602	112051782	reg1010715.p1	4.082	+	BC044801 NM_183061 AK128084	-38604	-	CU688884 BC030506 AY212246 AK313368 AK128276 AF521911 NM_001190259 NM_001190260 NM_152785	-199633	-	TSC_hg19_v1_chr3_+_111805267 AK303588 NM_001171747 NM_024616 AY830714 AK026839 BC017064 AK298076	-246464	+	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	266	+	AL832529 AK129797 AK293399 BC031103 TSC_hg19_v1_chr3_+_112052024 AK074972	332	+	AK292692 NM_001085357 NM_181780	166703	-	BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##BC030506|GCET2|257144|germinal center expressed transcript 2##AY212246|GCET2|257144|germinal center expressed transcript 2##AK313368|GCET2|257144|germinal center expressed transcript 2##AF521911|GCET2|257144|germinal center expressed transcript 2##NM_001190259|GCET2|257144|germinal center expressed transcript 2##NM_001190260|GCET2|257144|germinal center expressed transcript 2##NM_152785|GCET2|257144|germinal center expressed transcript 2##AK303588|C3orf52|79669|chromosome 3 open reading frame 52##NM_001171747|C3orf52|79669|chromosome 3 open reading frame 52##NM_024616|C3orf52|79669|chromosome 3 open reading frame 52##AY830714|C3orf52|79669|chromosome 3 open reading frame 52##AK026839|C3orf52|79669|chromosome 3 open reading frame 52##BC017064|C3orf52|79669|chromosome 3 open reading frame 52##AK298076|C3orf52|79669|chromosome 3 open reading frame 52##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule##AL832529|CD200|4345|CD200 molecule##AK129797|CD200|4345|CD200 molecule##AK293399|CD200|4345|CD200 molecule##BC031103|CD200|4345|CD200 molecule##AK074972|CD200|4345|CD200 molecule##AK292692|BTLA|151888|B and T lymphocyte associated##NM_001085357|BTLA|151888|B and T lymphocyte associated##NM_181780|BTLA|151888|B and T lymphocyte associated	1.440682	0.0	denovo_WM_7:-59:0.527	denovo_WM_7:-60:0.470
chr3	133142800	133142934	reg1012109.p2	4.082	+	NM_003571 BC113518 BC113520 HQ258421 U48224	-24009	+	TSC_hg19_v1_chr3_+_132757234 AY358381 BC000568	-385633	+	NM_001136469 NM_023943 TSC_hg19_v1_chr3_+_132757202	-385680	+	TSC_hg19_v1_chr3_+_133292443 NM_001134422 NM_017548	149609	+	TSC_hg19_v1_chr3_+_133292588 AF103803	149705	+	TSC_hg19_v1_chr3_+_133292835 BC007338	149927	+	NM_003571|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113518|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113520|BFSP2|8419|beaded filament structural protein 2, phakinin##HQ258421|BFSP2|8419|beaded filament structural protein 2, phakinin##U48224|BFSP2|8419|beaded filament structural protein 2, phakinin##AY358381|TMEM108|66000|transmembrane protein 108##BC000568|TMEM108|66000|transmembrane protein 108##NM_001136469|TMEM108|66000|transmembrane protein 108##NM_023943|TMEM108|66000|transmembrane protein 108##NM_001134422|CDV3|55573|CDV3 homolog (mouse)##NM_017548|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)	0.460788	0.0	denovo_WM_7:20:0.317
chr5	156905290	156905384	reg1016936.p1	4.082	+	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	-18067	+	AK296972 NM_001099287 NM_001172292	-18311	+	TSC_hg19_v1_chr5_+_156820161 AK172724	-85149	+	AB462931 TSC_hg19_v1_chr5_-_157002728	97379	-	AF311317 AF326918 TSC_hg19_v1_chr5_-_157002784 Y13786 AK091464 AK308182 AX747000 NM_033274	97468	-	AB527685 TSC_hg19_v1_chr5_-_157079170	173791	-	AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4##AK296972|NIPAL4|348938|NIPA-like domain containing 4##NM_001099287|NIPAL4|348938|NIPA-like domain containing 4##NM_001172292|NIPAL4|348938|NIPA-like domain containing 4##AK172724|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AF311317|ADAM19|8728|ADAM metallopeptidase domain 19##AF326918|ADAM19|8728|ADAM metallopeptidase domain 19##Y13786|ADAM19|8728|ADAM metallopeptidase domain 19##AK091464|ADAM19|8728|ADAM metallopeptidase domain 19##AK308182|ADAM19|8728|ADAM metallopeptidase domain 19##NM_033274|ADAM19|8728|ADAM metallopeptidase domain 19	0.998218	0.0	
chr9	82187131	82187257	reg1004874.p2	4.082	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-308	+	AK295222 TSC_hg19_v1_chr9_+_80912042 AK295310 NM_021154 NM_058179 BC004863 BC018129 BC000971 BC001618 AK025460 BC016645 AY131232 AF113132 DQ894126 CU676192 CU677657 BT006840	-1275136	+	TSC_hg19_v1_chr9_+_80850990 NM_001098802 NM_032171 AK303457 AK022705 BC058931 BC128058	-1336164	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	330	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	491	+	BC010100 NM_005077	2116401	-	NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK295222|PSAT1|29968|phosphoserine aminotransferase 1##AK295310|PSAT1|29968|phosphoserine aminotransferase 1##NM_021154|PSAT1|29968|phosphoserine aminotransferase 1##NM_058179|PSAT1|29968|phosphoserine aminotransferase 1##BC004863|PSAT1|29968|phosphoserine aminotransferase 1##BC018129|PSAT1|29968|phosphoserine aminotransferase 1##BC000971|PSAT1|29968|phosphoserine aminotransferase 1##AK025460|PSAT1|29968|phosphoserine aminotransferase 1##BC016645|PSAT1|29968|phosphoserine aminotransferase 1##AY131232|PSAT1|29968|phosphoserine aminotransferase 1##AF113132|PSAT1|29968|phosphoserine aminotransferase 1##DQ894126|PSAT1|29968|phosphoserine aminotransferase 1##BT006840|PSAT1|29968|phosphoserine aminotransferase 1##NM_001098802|CEP78|84131|centrosomal protein 78kDa##NM_032171|CEP78|84131|centrosomal protein 78kDa##AK303457|CEP78|84131|centrosomal protein 78kDa##AK022705|CEP78|84131|centrosomal protein 78kDa##BC058931|CEP78|84131|centrosomal protein 78kDa##BC128058|CEP78|84131|centrosomal protein 78kDa##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	0.194619	0.0	
chrX	27933771	27933866	reg1016078.p1	4.082	+	AK057527 NM_182506 BC101307 BC101309 BC101310	-107703	+	BC157859 NM_001136533	-168893	+	AK097561 BC067286 NM_173523	-1723262	+	AK128123 NM_001017930	65747	-	AF181284 AJ243874 NM_014271	671801	+	NM_002364 AF015766 AK313347 BC026071 AK223081	2299865	+	AK057527|MAGEB10|139422|melanoma antigen family B, 10##NM_182506|MAGEB10|139422|melanoma antigen family B, 10##BC101307|MAGEB10|139422|melanoma antigen family B, 10##BC101309|MAGEB10|139422|melanoma antigen family B, 10##BC101310|MAGEB10|139422|melanoma antigen family B, 10##BC157859|DCAF8L2|347442|DDB1 and CUL4 associated factor 8-like 2##NM_001136533|DCAF8L2|347442|DDB1 and CUL4 associated factor 8-like 2##AK097561|MAGEB6|158809|melanoma antigen family B, 6##BC067286|MAGEB6|158809|melanoma antigen family B, 6##NM_173523|MAGEB6|158809|melanoma antigen family B, 6##AK128123|DCAF8L1|139425|DDB1 and CUL4 associated factor 8-like 1##NM_001017930|DCAF8L1|139425|DDB1 and CUL4 associated factor 8-like 1##AF181284|IL1RAPL1|11141|interleukin 1 receptor accessory protein-like 1##AJ243874|IL1RAPL1|11141|interleukin 1 receptor accessory protein-like 1##NM_014271|IL1RAPL1|11141|interleukin 1 receptor accessory protein-like 1##NM_002364|MAGEB2|4113|melanoma antigen family B, 2##AF015766|MAGEB2|4113|melanoma antigen family B, 2##AK313347|MAGEB2|4113|melanoma antigen family B, 2##BC026071|MAGEB2|4113|melanoma antigen family B, 2##AK223081|MAGEB2|4113|melanoma antigen family B, 2	0.0	0.0	
chr1	204422488	204422656	reg1012253.p1	4.081	+	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	-41632	-	TSC_hg19_v1_chr1_+_204380508 BC009873	-42051	+	AB023186 BC152475 NM_014935 TSC_hg19_v1_chr1_-_204329058	-93522	-	BC132876 BC136645 BC144342 NM_002646 AK308153	36926	-	TSC_hg19_v1_chr1_-_204463934 BC094741	41193	-	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	62930	+	BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AB023186|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC152475|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##NM_014935|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC132876|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC136645|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC144342|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_002646|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AK308153|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)	0.0	0.0	
chr1	210509561	210509664	reg1012013.p1	4.081	+	NM_001170580 BC051191	-6971	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-7347	+	NM_001122834 NM_001170564 AK297193	-8016	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	797773	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	923096	+	TSC_hg19_v1_chr1_+_211432726 AK131312	923115	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.997585	0.0	
chr14	103857512	103857692	reg1015210.p1	4.081	+	TSC_hg19_v1_chr14_+_103851775 AF465413 BC024773 U64205	-5716	+	TSC_hg19_v1_chr14_+_103851772 BX161395	-5832	+	TSC_hg19_v1_chr14_+_103851700 NM_001128918 NM_001128919 NM_001128920 NM_001128921 NM_002376	-5899	+	CR542268 CU676412 M16364 TSC_hg19_v1_chr14_-_103988931	131278	-	M16451 L47647 TSC_hg19_v1_chr14_-_103989168 BC004914 BC019259 BC008323 BC001190 BC019281 BC010002 AK290101 AK312282 AK298198	131541	-	NM_001823 TSC_hg19_v1_chr14_-_103989206	131600	-	AF465413|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BC024773|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##U64205|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BX161395|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##CR542268|CKB|1152|creatine kinase, brain##M16364|CKB|1152|creatine kinase, brain##M16451|CKB|1152|creatine kinase, brain##L47647|CKB|1152|creatine kinase, brain##BC004914|CKB|1152|creatine kinase, brain##BC019259|CKB|1152|creatine kinase, brain##BC008323|CKB|1152|creatine kinase, brain##BC001190|CKB|1152|creatine kinase, brain##BC019281|CKB|1152|creatine kinase, brain##BC010002|CKB|1152|creatine kinase, brain##AK290101|CKB|1152|creatine kinase, brain##AK312282|CKB|1152|creatine kinase, brain##AK298198|CKB|1152|creatine kinase, brain##NM_001823|CKB|1152|creatine kinase, brain	0.0	0.0	
chr14	73190535	73190601	reg1004058.p1	4.081	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-790702	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-791415	+	AK294895 NM_001204423	-791752	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	170240	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	202567	+	AK098542 AF311602 NM_178441	263089	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.044064	0.0	
chr15	65965914	65965994	reg1013217.p1	4.081	+	AF062922 NM_004727	-51685	+	BC012630 TSC_hg19_v1_chr15_+_65903706 AB014602 BC029407 AK304006	-62299	+	AL136662 TSC_hg19_v1_chr15_-_65903462 BC007991 AK296134 AK027475 AK301033 AK301742 AK310857 AK301222 AK293207 NM_001207058 NM_001207059	-62438	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	118519	-	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	118639	-	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	195893	+	AF062922|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##NM_004727|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC012630|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AB014602|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##BC029407|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AK304006|SLC24A1|9187|solute carrier family 24 (sodium/potassium/calcium exchanger), member 1##AL136662|C15orf44|81556|chromosome 15 open reading frame 44##BC007991|C15orf44|81556|chromosome 15 open reading frame 44##AK296134|C15orf44|81556|chromosome 15 open reading frame 44##AK027475|C15orf44|81556|chromosome 15 open reading frame 44##AK301033|C15orf44|81556|chromosome 15 open reading frame 44##AK301742|C15orf44|81556|chromosome 15 open reading frame 44##AK310857|C15orf44|81556|chromosome 15 open reading frame 44##AK301222|C15orf44|81556|chromosome 15 open reading frame 44##AK293207|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207058|C15orf44|81556|chromosome 15 open reading frame 44##NM_001207059|C15orf44|81556|chromosome 15 open reading frame 44##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family	0.997126	0.0	denovo_WM_7:22:0.306	denovo_WM_7:23:0.306	denovo_WM_7:24:0.306
chr15	85146506	85146630	reg1013629.p2	4.081	+	TSC_hg19_v1_chr15_+_85144280 AK128624 BC041620 NM_001007072 NM_017894 NM_181877 AK131309 AK291224 AK000602 AY262259 AY279349	-2287	+	NM_001243531	-305327	+	TSC_hg19_v1_chr15_+_84322810 AF237652 NM_207517 BC128389 BC128390 AK092324 AK308845 AX747482	-823741	+	AK090406 TSC_hg19_v1_chr15_-_85197483 AK055578	50904	-	TSC_hg19_v1_chr15_-_85197503 AF161382 AK295372 BC014115 AK027794 AK055729 AK225199	50938	-	TSC_hg19_v1_chr15_-_85197515 AK225068 NM_032856 BC050648 BC063392	50958	-	AK128624|ZSCAN2|54993|zinc finger and SCAN domain containing 2##BC041620|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001007072|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_017894|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_181877|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK131309|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK291224|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AK000602|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY262259|ZSCAN2|54993|zinc finger and SCAN domain containing 2##AY279349|ZSCAN2|54993|zinc finger and SCAN domain containing 2##NM_001243531|LOC100505679|100505679|uncharacterized LOC100505679##AF237652|ADAMTSL3|57188|ADAMTS-like 3##NM_207517|ADAMTSL3|57188|ADAMTS-like 3##BC128389|ADAMTSL3|57188|ADAMTS-like 3##BC128390|ADAMTSL3|57188|ADAMTS-like 3##AK092324|ADAMTSL3|57188|ADAMTS-like 3##AK308845|ADAMTSL3|57188|ADAMTS-like 3##AK090406|WDR73|84942|WD repeat domain 73##AK055578|WDR73|84942|WD repeat domain 73##AF161382|WDR73|84942|WD repeat domain 73##AK295372|WDR73|84942|WD repeat domain 73##BC014115|WDR73|84942|WD repeat domain 73##AK027794|WDR73|84942|WD repeat domain 73##AK055729|WDR73|84942|WD repeat domain 73##AK225199|WDR73|84942|WD repeat domain 73##AK225068|WDR73|84942|WD repeat domain 73##NM_032856|WDR73|84942|WD repeat domain 73##BC050648|WDR73|84942|WD repeat domain 73##BC063392|WDR73|84942|WD repeat domain 73	0.999132	0.0	denovo_WM_7:39:0.239	denovo_WM_7:40:0.239	denovo_WM_7:41:0.239	denovo_WM_7:42:0.239
chr17	65610121	65610257	reg1012098.p1	4.081	+	BC007905 NM_012417 NM_181671	-236266	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-236601	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-236780	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	103861	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	211513	+	AK293224 TSC_hg19_v1_chr17_+_65822221	212028	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	1.939327	0.0	denovo_WM_7:20:0.244	denovo_WM_7:21:0.701	denovo_WM_7:36:0.839
chr20	6866930	6867035	reg1011988.p1	4.081	+	BC069214 NM_001200	-118238	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-762819	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-763105	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1054120	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1133318	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1133425	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.812121	0.0	denovo_WM_7:11:0.676
chr2	143602649	143602753	reg1012796.p1	4.081	+	AF176832 NM_018557	-713432	-	TSC_hg19_v1_chr2_-_142888540 AK054663	-714145	-	AF043467 AB162675 BC101461 BC101462 BC101463 BC104741 NM_007226	-4064895	-	NM_001032998 NM_001199241 NM_003937 AK223426 TSC_hg19_v1_chr2_+_143635213 U57721	32505	+	BC000879 TSC_hg19_v1_chr2_+_143635232 AK292095 AK315343 AK290900	32539	+	NM_018460 BC029346 TSC_hg19_v1_chr2_+_143886947 AK308219 AF212222 AF217507 AF217522 AY219338 AK226014	284229	+	AF176832|LRP1B|53353|low density lipoprotein receptor-related protein 1B##NM_018557|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AK054663|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AF043467|NXPH2|11249|neurexophilin 2##AB162675|NXPH2|11249|neurexophilin 2##BC101461|NXPH2|11249|neurexophilin 2##BC101462|NXPH2|11249|neurexophilin 2##BC101463|NXPH2|11249|neurexophilin 2##BC104741|NXPH2|11249|neurexophilin 2##NM_007226|NXPH2|11249|neurexophilin 2##NM_001032998|KYNU|8942|kynureninase##NM_001199241|KYNU|8942|kynureninase##NM_003937|KYNU|8942|kynureninase##AK223426|KYNU|8942|kynureninase##U57721|KYNU|8942|kynureninase##BC000879|KYNU|8942|kynureninase##AK292095|KYNU|8942|kynureninase##AK315343|KYNU|8942|kynureninase##AK290900|KYNU|8942|kynureninase##NM_018460|ARHGAP15|55843|Rho GTPase activating protein 15##AK308219|ARHGAP15|55843|Rho GTPase activating protein 15##AF212222|ARHGAP15|55843|Rho GTPase activating protein 15##AF217507|ARHGAP15|55843|Rho GTPase activating protein 15##AF217522|ARHGAP15|55843|Rho GTPase activating protein 15##AY219338|ARHGAP15|55843|Rho GTPase activating protein 15##AK226014|ARHGAP15|55843|Rho GTPase activating protein 15	0.0	0.0	
chr7	1020235	1020321	reg1011856.p2	4.081	+	BC042434 BC053372 TSC_hg19_v1_chr7_-_1015171 BC058158 AK023185 BC110420 BC070383 AK290517 AY957566 BC103632 NM_001031617	-5089	-	TSC_hg19_v1_chr7_-_994377 AJ006422	-25815	-	TSC_hg19_v1_chr7_-_994317 NM_006869	-25965	-	TSC_hg19_v1_chr7_+_1022816 BC025761 NM_017781	2540	+	TSC_hg19_v1_chr7_+_1022978 AK000366	2691	+	TSC_hg19_v1_chr7_-_1067984 L07392 BC025971	47679	-	BC042434|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC053372|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC058158|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK023185|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC110420|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC070383|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK290517|ADAP1|11033|ArfGAP with dual PH domains 1##AY957566|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC103632|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_001031617|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AJ006422|ADAP1|11033|ArfGAP with dual PH domains 1##NM_006869|ADAP1|11033|ArfGAP with dual PH domains 1##BC025761|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##NM_017781|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##AK000366|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##BC025971|C7orf50|84310|chromosome 7 open reading frame 50	0.999494	0.0	
chr7	94785811	94785900	reg1019224.p1	4.081	+	NM_001166161 NM_001166162 NM_001166163	-246646	+	TSC_hg19_v1_chr7_+_94536986 NM_001166160 NM_017650 AK096514 BC150636	-248889	+	TSC_hg19_v1_chr7_+_94297448 AF038197	-488403	+	M63013 AB528644 M63012 S64615 TSC_hg19_v1_chr7_-_94953802 AK314027 BC074719	167919	-	TSC_hg19_v1_chr7_-_94953845 D84371 U53784 Z70723 NM_000446	168000	-	L48516 AF320003 AF329433 CU687094 TSC_hg19_v1_chr7_-_95025687 AK301772 BC070374 AK304282 NM_000940	239801	-	NM_001166161|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_001166162|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_001166163|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_001166160|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##NM_017650|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##AK096514|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##BC150636|PPP1R9A|55607|protein phosphatase 1, regulatory subunit 9A##AF038197|PEG10|23089|paternally expressed 10##M63013|PON1|5444|paraoxonase 1##M63012|PON1|5444|paraoxonase 1##S64615|PON1|5444|paraoxonase 1##AK314027|PON1|5444|paraoxonase 1##BC074719|PON1|5444|paraoxonase 1##D84371|PON1|5444|paraoxonase 1##U53784|PON1|5444|paraoxonase 1##Z70723|PON1|5444|paraoxonase 1##NM_000446|PON1|5444|paraoxonase 1##L48516|PON3|5446|paraoxonase 3##AF320003|PON3|5446|paraoxonase 3##AF329433|PON3|5446|paraoxonase 3##BC070374|PON3|5446|paraoxonase 3##AK304282|PON3|5446|paraoxonase 3##NM_000940|PON3|5446|paraoxonase 3	0.0	0.106784	
chr8	138995452	138995604	reg1012276.p1	4.081	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-2525327	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-2525870	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-3270254	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	513578	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	930716	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	1719754	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.986121	0.0	denovo_WM_7:8:0.232	denovo_WM_7:9:0.232	denovo_WM_7:10:0.232	denovo_WM_7:11:0.232
chr1	40778228	40778408	reg1014124.p2	4.080	+	TSC_hg19_v1_chr1_+_40735749 AK027874	-42555	+	TSC_hg19_v1_chr1_+_40723926 EU176257 EU176564	-54381	+	TSC_hg19_v1_chr1_+_40723907 Y13834	-54410	+	M95610 AB590601 TSC_hg19_v1_chr1_-_40782905	4547	-	TSC_hg19_v1_chr1_-_40782958 BC136326 BC136327 NM_001852	4625	-	TSC_hg19_v1_chr1_-_40782992 BC041479	4702	-	AK027874|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##EU176257|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##EU176564|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##Y13834|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##M95610|COL9A2|1298|collagen, type IX, alpha 2##BC136326|COL9A2|1298|collagen, type IX, alpha 2##BC136327|COL9A2|1298|collagen, type IX, alpha 2##NM_001852|COL9A2|1298|collagen, type IX, alpha 2##BC041479|COL9A2|1298|collagen, type IX, alpha 2	0.0	0.0	
chr19	5903038	5903181	reg1005431.p1	4.080	+	BC140905 NM_002034 U27329 U27330	-32561	-	TSC_hg19_v1_chr19_-_5851461 AK291852 X53578 AK313575 U27326 U27327 U27328 NM_000149 NM_001097639 NM_001097640 NM_001097641	-51628	-	BC074836 BC074837 BC108675 TSC_hg19_v1_chr19_-_5846545 AF131913	-56595	-	AJ539081 TSC_hg19_v1_chr19_-_5903795 AX775861 BC069045 AY726561 AK127692 AK291087	651	-	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	898	-	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	1760	+	BC140905|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##NM_002034|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27329|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##U27330|FUT5|2527|fucosyltransferase 5 (alpha (1,3) fucosyltransferase)##AK291852|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##X53578|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AK313575|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27326|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27327|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##U27328|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_000149|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097639|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097640|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##NM_001097641|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##BC074836|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##BC074837|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##BC108675|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AF131913|FUT3|2525|fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group)##AJ539081|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC069045|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AY726561|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK127692|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein	0.997713	0.0	denovo_WM_7:-76:0.238	denovo_WM_7:-77:0.238	denovo_WM_7:-78:0.238	denovo_WM_7:-79:0.238
chr22	20850758	20850824	reg1010808.p1	4.080	+	AK222850 TSC_hg19_v1_chr22_-_20850077 AK290669 AK294682 AK027266 BC015923 NM_032775	-669	-	TSC_hg19_v1_chr22_-_20792108 AB024433 AF522196 NM_153334 NM_182895	-58665	-	AB052951 TSC_hg19_v1_chr22_-_20792077	-58729	-	TSC_hg19_v1_chr22_+_20861871 AK315540	11075	+	TSC_hg19_v1_chr22_+_20861877 AK074268	11085	+	TSC_hg19_v1_chr22_+_20861884 NM_001003891 NM_015889	11093	+	AK222850|KLHL22|84861|kelch-like 22 (Drosophila)##AK290669|KLHL22|84861|kelch-like 22 (Drosophila)##AK294682|KLHL22|84861|kelch-like 22 (Drosophila)##AK027266|KLHL22|84861|kelch-like 22 (Drosophila)##BC015923|KLHL22|84861|kelch-like 22 (Drosophila)##NM_032775|KLHL22|84861|kelch-like 22 (Drosophila)##AB024433|SCARF2|91179|scavenger receptor class F, member 2##AF522196|SCARF2|91179|scavenger receptor class F, member 2##NM_153334|SCARF2|91179|scavenger receptor class F, member 2##NM_182895|SCARF2|91179|scavenger receptor class F, member 2##AB052951|SCARF2|91179|scavenger receptor class F, member 2##AK315540|MED15|51586|mediator complex subunit 15##AK074268|MED15|51586|mediator complex subunit 15##NM_001003891|MED15|51586|mediator complex subunit 15##NM_015889|MED15|51586|mediator complex subunit 15	0.0	0.0	
chr7	111825563	111825726	reg1016751.p2	4.080	+	TSC_hg19_v1_chr7_-_111428948 AK294820	-396633	-	AF359563 NM_032549 TSC_hg19_v1_chr7_-_111202539 AK311968 BC008497 NM_001244606	-623160	-	NM_001099658 NM_001099660 NM_018334 AK001991 BC035133 TSC_hg19_v1_chr7_+_110731182	-1094521	+	AY233380 BC117688 BC117689 BC117694 TSC_hg19_v1_chr7_-_111846334	20621	-	TSC_hg19_v1_chr7_-_111846458 AK095906 AK309605 NM_014705	20818	-	AF209198 NM_021994 TSC_hg19_v1_chr7_+_111846702	21028	+	AK294820|DOCK4|9732|dedicator of cytokinesis 4##AF359563|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_032549|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK311968|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC008497|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001244606|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001099658|LRRN3|54674|leucine rich repeat neuronal 3##NM_001099660|LRRN3|54674|leucine rich repeat neuronal 3##NM_018334|LRRN3|54674|leucine rich repeat neuronal 3##AK001991|LRRN3|54674|leucine rich repeat neuronal 3##BC035133|LRRN3|54674|leucine rich repeat neuronal 3##AY233380|DOCK4|9732|dedicator of cytokinesis 4##BC117688|DOCK4|9732|dedicator of cytokinesis 4##BC117689|DOCK4|9732|dedicator of cytokinesis 4##BC117694|DOCK4|9732|dedicator of cytokinesis 4##AK095906|DOCK4|9732|dedicator of cytokinesis 4##AK309605|DOCK4|9732|dedicator of cytokinesis 4##NM_014705|DOCK4|9732|dedicator of cytokinesis 4##AF209198|ZNF277|11179|zinc finger protein 277##NM_021994|ZNF277|11179|zinc finger protein 277	0.992069	0.0	denovo_WM_7:22:0.245	denovo_WM_7:23:0.285	denovo_WM_7:26:0.429
chr10	63700810	63700886	reg1004547.p1	4.079	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-39417	+	NM_032199	-39836	+	BC041932 NM_173554	-278130	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	108248	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	327691	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	433195	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.998108	0.0	denovo_WM_7:-94:0.249	denovo_WM_7:-95:0.213
chr14	102667653	102667776	reg1018022.p1	4.079	+	TSC_hg19_v1_chr14_+_102606250 NM_001242414 NM_001242415 NM_001242416 NM_001242417 NM_001242418 NM_144574 NM_181291 NM_181308 BC030654 AK090580 AK225852 BC028387 AK090978 AX746714 AK297727 AL832242 AL832500 CU688486 DQ891530 DQ894719 EU831767 EU831845 AF327354 BX248274	-61504	+	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	-61675	-	TSC_hg19_v1_chr14_-_102553513 NM_005348	-114208	-	TSC_hg19_v1_chr14_-_102771492 AK094747 BC053536 BC026069 AK302349 AK312778 AB022694 NM_014226	103785	-	AK093342 AX748064 TSC_hg19_v1_chr14_+_102783841	116063	+	TSC_hg19_v1_chr14_+_102786095 BX248266 NM_018335	118380	+	NM_001242414|WDR20|91833|WD repeat domain 20##NM_001242415|WDR20|91833|WD repeat domain 20##NM_001242416|WDR20|91833|WD repeat domain 20##NM_001242417|WDR20|91833|WD repeat domain 20##NM_001242418|WDR20|91833|WD repeat domain 20##NM_144574|WDR20|91833|WD repeat domain 20##NM_181291|WDR20|91833|WD repeat domain 20##NM_181308|WDR20|91833|WD repeat domain 20##BC030654|WDR20|91833|WD repeat domain 20##AK090580|WDR20|91833|WD repeat domain 20##AK225852|WDR20|91833|WD repeat domain 20##BC028387|WDR20|91833|WD repeat domain 20##AK090978|WDR20|91833|WD repeat domain 20##AK297727|WDR20|91833|WD repeat domain 20##AL832242|WDR20|91833|WD repeat domain 20##AL832500|WDR20|91833|WD repeat domain 20##DQ891530|WDR20|91833|WD repeat domain 20##DQ894719|WDR20|91833|WD repeat domain 20##EU831767|WDR20|91833|WD repeat domain 20##EU831845|WDR20|91833|WD repeat domain 20##AF327354|WDR20|91833|WD repeat domain 20##BX248274|WDR20|91833|WD repeat domain 20##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_005348|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK094747|MOK|5891|MOK protein kinase##BC053536|MOK|5891|MOK protein kinase##BC026069|MOK|5891|MOK protein kinase##AK302349|MOK|5891|MOK protein kinase##AK312778|MOK|5891|MOK protein kinase##AB022694|MOK|5891|MOK protein kinase##NM_014226|MOK|5891|MOK protein kinase##AK093342|ZNF839|55778|zinc finger protein 839##BX248266|ZNF839|55778|zinc finger protein 839##NM_018335|ZNF839|55778|zinc finger protein 839	1.007747	0.0	denovo_WM_7:5:0.565
chr1	82048511	82048691	reg1003180.p2	4.079	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-276674	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-2576174	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-2933103	+	AF104266 AF104938 AF104939 NM_012302	217480	+	AK097722 TSC_hg19_v1_chr1_-_84326308	2277667	-	TSC_hg19_v1_chr1_-_84326677 BC036594	2278075	-	BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.0	0.0	
chr2	148747556	148747690	reg1014641.p1	4.079	+	BC069707 NM_001616 D31770 X62381 BC067416 BC067417 BC067418 X63128 AB529011 CU686984 CU688290	-144978	+	TSC_hg19_v1_chr2_+_148602300 AK314124	-145288	+	TSC_hg19_v1_chr2_+_148602085 AK301629 M93415	-145506	+	TSC_hg19_v1_chr2_-_148778310 AK225092 BC005388 AF022108 AF047598 AF132596 BC014847 AK295721 AK291989 AK294878 AK298862 NM_001190882 NM_001190879 AK299749 NM_002552 NM_001190881 NM_181741	30739	-	TSC_hg19_v1_chr2_+_148778636 NM_018328 EF542797	30986	+	NM_181742	31549	-	BC069707|ACVR2A|92|activin A receptor, type IIA##NM_001616|ACVR2A|92|activin A receptor, type IIA##D31770|ACVR2A|92|activin A receptor, type IIA##X62381|ACVR2A|92|activin A receptor, type IIA##BC067416|ACVR2A|92|activin A receptor, type IIA##BC067417|ACVR2A|92|activin A receptor, type IIA##BC067418|ACVR2A|92|activin A receptor, type IIA##X63128|ACVR2A|92|activin A receptor, type IIA##AK314124|ACVR2A|92|activin A receptor, type IIA##AK301629|ACVR2A|92|activin A receptor, type IIA##M93415|ACVR2A|92|activin A receptor, type IIA##AK225092|ORC4|5000|origin recognition complex, subunit 4##BC005388|ORC4|5000|origin recognition complex, subunit 4##AF022108|ORC4|5000|origin recognition complex, subunit 4##AF047598|ORC4|5000|origin recognition complex, subunit 4##AF132596|ORC4|5000|origin recognition complex, subunit 4##BC014847|ORC4|5000|origin recognition complex, subunit 4##AK295721|ORC4|5000|origin recognition complex, subunit 4##AK291989|ORC4|5000|origin recognition complex, subunit 4##AK294878|ORC4|5000|origin recognition complex, subunit 4##AK298862|ORC4|5000|origin recognition complex, subunit 4##NM_001190882|ORC4|5000|origin recognition complex, subunit 4##NM_001190879|ORC4|5000|origin recognition complex, subunit 4##AK299749|ORC4|5000|origin recognition complex, subunit 4##NM_002552|ORC4|5000|origin recognition complex, subunit 4##NM_001190881|ORC4|5000|origin recognition complex, subunit 4##NM_181741|ORC4|5000|origin recognition complex, subunit 4##NM_018328|MBD5|55777|methyl-CpG binding domain protein 5##EF542797|MBD5|55777|methyl-CpG binding domain protein 5##NM_181742|ORC4|5000|origin recognition complex, subunit 4	0.0	0.57185	CTCF.p2:-11:0.311	CTCF.p2:-84:0.261
chr3	60840181	60840279	reg1014189.p1	4.079	+	BC050317 TSC_hg19_v1_chr3_-_59035759	-1804470	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-1804489	-	TSC_hg19_v1_chr3_-_59035711 AK124111 NM_198463 BC140002	-1804522	-	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	396860	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	706981	+	BC047734 TSC_hg19_v1_chr3_+_61547294	707056	+	BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##AK124111|C3orf67|200844|chromosome 3 open reading frame 67##NM_198463|C3orf67|200844|chromosome 3 open reading frame 67##BC140002|C3orf67|200844|chromosome 3 open reading frame 67##BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	1.262423	0.0	denovo_WM_7:5:0.476	denovo_WM_7:6:0.476	denovo_WM_7:-89:0.217
chr5	167676047	167676227	reg1013606.p1	4.079	+	HE578282 HE578283 NM_001122679	-964295	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-4743494	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-4745849	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	42684	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	237337	+	TSC_hg19_v1_chr5_+_167956546 AX721195	280480	+	NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	0.998683	0.0	denovo_WM_7:0:0.313	denovo_WM_7:0:0.313	denovo_WM_7:1:0.313
chr11	57532853	57532998	reg1015250.p2	4.078	+	NM_001085458 NM_001085459 NM_001085460 NM_001085461 NM_001085462 NM_001085463 NM_001085464 NM_001085465 NM_001085466 NM_001085467 NM_001085468 NM_001085469 NM_001206883 NM_001206884 NM_001206885 NM_001206886 NM_001206887 NM_001206888 NM_001206889 NM_001206890 NM_001206891 NM_001331 TSC_hg19_v1_chr11_+_57529331 AF062317 AF062318 AF062319 AF062320 AF062321 AF062322 AF062323 AF062324 AF062325 AF062326 AF062327 AF062328 AF062329 AF062330 AF062331 AF062332 AF062333 AF062334 AF062335 AF062336 AF062337 AF062338 AF062339 AF062340 AF062341 AF062342 AF062343 AF062344 BC075795	-3586	+	NM_001145101	-13673	-	TSC_hg19_v1_chr11_+_57508992 BC021122	-23925	+	BC110819 NM_001005212	258427	+	BC151146 BC151147 NM_001005186	265487	+	NM_001005211	353990	-	NM_001085458|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085459|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085460|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085461|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085462|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085463|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085464|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085465|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085466|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085467|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085468|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001085469|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206883|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206884|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206885|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206886|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206887|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206888|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206889|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206890|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001206891|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062317|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062318|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062319|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062320|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062321|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062322|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062323|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062324|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062325|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062326|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062327|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062328|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062329|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062330|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062331|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062332|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062333|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062334|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062335|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062336|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062337|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062338|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062339|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062340|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062341|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062342|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062343|CTNND1|1500|catenin (cadherin-associated protein), delta 1##AF062344|CTNND1|1500|catenin (cadherin-associated protein), delta 1##BC075795|CTNND1|1500|catenin (cadherin-associated protein), delta 1##NM_001145101|BTBD18|643376|BTB (POZ) domain containing 18##BC021122|C11orf31|280636|chromosome 11 open reading frame 31##BC110819|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##NM_001005212|OR9Q1|219956|olfactory receptor, family 9, subfamily Q, member 1##BC151146|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##BC151147|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005186|OR6Q1|219952|olfactory receptor, family 6, subfamily Q, member 1##NM_001005211|OR9I1|219954|olfactory receptor, family 9, subfamily I, member 1	0.997214	0.0	
chr13	53191555	53191657	reg1013370.p2	4.078	+	TSC_hg19_v1_chr13_+_53035247 AL136848	-156313	+	EF560732 TSC_hg19_v1_chr13_+_53029614 BC105806 BC066920 BC130296 BC136332 EU832808 GQ129239 HQ258356	-161954	+	NM_001098525 NM_018204 TSC_hg19_v1_chr13_+_53029573 AY062261 AY062262 AK022982 Y15758	-162053	+	TSC_hg19_v1_chr13_+_53191659 NM_001011724 NM_001011725 BC007108 AK123159 BC082242	31	+	TSC_hg19_v1_chr13_+_53216565 BC108266	24959	+	NM_001130912 NM_006704 TSC_hg19_v1_chr13_+_53227044 AJ344097 AK292128 AY321358 AK302363 AY271314 BC000911 AK291402 AB528309 AF132856 BT009798 DQ890945 DQ894108	35336	+	AL136848|CKAP2|26586|cytoskeleton associated protein 2##EF560732|CKAP2|26586|cytoskeleton associated protein 2##BC105806|CKAP2|26586|cytoskeleton associated protein 2##BC066920|CKAP2|26586|cytoskeleton associated protein 2##BC130296|CKAP2|26586|cytoskeleton associated protein 2##BC136332|CKAP2|26586|cytoskeleton associated protein 2##EU832808|CKAP2|26586|cytoskeleton associated protein 2##GQ129239|CKAP2|26586|cytoskeleton associated protein 2##HQ258356|CKAP2|26586|cytoskeleton associated protein 2##NM_001098525|CKAP2|26586|cytoskeleton associated protein 2##NM_018204|CKAP2|26586|cytoskeleton associated protein 2##AY062261|CKAP2|26586|cytoskeleton associated protein 2##AY062262|CKAP2|26586|cytoskeleton associated protein 2##AK022982|CKAP2|26586|cytoskeleton associated protein 2##Y15758|CKAP2|26586|cytoskeleton associated protein 2##NM_001011724|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001011725|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##AK123159|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##BC082242|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##BC108266|HNRNPA1L2|144983|heterogeneous nuclear ribonucleoprotein A1-like 2##NM_001130912|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##NM_006704|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AJ344097|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK292128|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY321358|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK302363|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AY271314|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BC000911|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AK291402|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##AF132856|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##BT009798|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ890945|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)##DQ894108|SUGT1|10910|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	0.0	0.0	
chr19	6598802	6598960	reg1016660.p1	4.078	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-7723	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-7775	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-7849	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	71243	-	AF064090 NM_003807 NM_172014	71717	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	121775	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.999759	0.0	denovo_WM_7:-18:0.298	denovo_WM_7:-19:0.298	denovo_WM_7:-20:0.298
chr4	39933205	39933295	reg1006003.p1	4.078	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-233446	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-292694	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-403624	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	46088	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	46343	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	125282	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.0	0.0	
chr4	79087858	79087992	reg1017126.p2	4.078	+	NM_001166133 NM_025074 TSC_hg19_v1_chr4_+_78978757 AK096838	-109185	+	NM_020236 AF212225 TSC_hg19_v1_chr4_+_78783990 BC014356 BC017765 AK315600 BC015109 BC032595	-304011	+	TSC_hg19_v1_chr4_-_78740523 AK304397 AK058188 AK303417 NM_144571	-347381	-	BC006366 TSC_hg19_v1_chr4_-_79103287	15360	-	NM_005139 TSC_hg19_v1_chr4_+_79472790	384845	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	384983	+	NM_001166133|FRAS1|80144|Fraser syndrome 1##NM_025074|FRAS1|80144|Fraser syndrome 1##AK096838|FRAS1|80144|Fraser syndrome 1##NM_020236|MRPL1|65008|mitochondrial ribosomal protein L1##AF212225|MRPL1|65008|mitochondrial ribosomal protein L1##BC014356|MRPL1|65008|mitochondrial ribosomal protein L1##BC017765|MRPL1|65008|mitochondrial ribosomal protein L1##AK315600|MRPL1|65008|mitochondrial ribosomal protein L1##BC015109|MRPL1|65008|mitochondrial ribosomal protein L1##BC032595|MRPL1|65008|mitochondrial ribosomal protein L1##AK304397|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK058188|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK303417|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_144571|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_005139|ANXA3|306|annexin A3##BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3	0.0	0.0	
chr5	156929047	156929227	reg1016428.p2	4.078	+	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	-41867	+	AK296972 NM_001099287 NM_001172292	-42111	+	TSC_hg19_v1_chr5_+_156820161 AK172724	-108949	+	AB462931 TSC_hg19_v1_chr5_-_157002728	73579	-	AF311317 AF326918 TSC_hg19_v1_chr5_-_157002784 Y13786 AK091464 AK308182 AX747000 NM_033274	73668	-	AB527685 TSC_hg19_v1_chr5_-_157079170	149991	-	AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4##AK296972|NIPAL4|348938|NIPA-like domain containing 4##NM_001099287|NIPAL4|348938|NIPA-like domain containing 4##NM_001172292|NIPAL4|348938|NIPA-like domain containing 4##AK172724|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AF311317|ADAM19|8728|ADAM metallopeptidase domain 19##AF326918|ADAM19|8728|ADAM metallopeptidase domain 19##Y13786|ADAM19|8728|ADAM metallopeptidase domain 19##AK091464|ADAM19|8728|ADAM metallopeptidase domain 19##AK308182|ADAM19|8728|ADAM metallopeptidase domain 19##NM_033274|ADAM19|8728|ADAM metallopeptidase domain 19	0.0	0.0	
chr6	15246193	15246348	reg1012464.p1	4.078	+	TSC_hg19_v1_chr6_+_15245702 AK302624	-553	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-1128248	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-1128365	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	142	+	BC033996 TSC_hg19_v1_chr6_-_15248900	2631	-	TSC_hg19_v1_chr6_+_15249113 AK303610	2843	+	AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2	0.185749	0.0	
chr6	16033463	16033613	reg1013355.p2	4.078	+	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	-370248	-	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	-370361	-	TSC_hg19_v1_chr6_+_15249113 AK303610	-784425	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	95764	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	95899	+	TSC_hg19_v1_chr6_+_16143281 AK026739	109772	+	NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein	0.0	0.0	
chr6	89351388	89351568	reg1003755.p2	4.078	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-475712	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-496442	-	BC029488 NM_030960 AF203447	-593948	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	321713	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	321830	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	321869	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.0	0.0	
chr10	101524279	101524399	reg1012094.p1	4.077	+	BX537557 NM_004376 NM_078470	-31917	-	TSC_hg19_v1_chr10_+_101491990 BC028948 BC011016 AF132966 AK302507 AK314687 AK001142 BC015059 BC021105	-32306	+	TSC_hg19_v1_chr10_+_101491984 NM_015960	-32372	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	18156	+	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	18224	+	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	166364	-	BX537557|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_004376|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##NM_078470|COX15|1355|COX15 homolog, cytochrome c oxidase assembly protein (yeast)##BC028948|CUTC|51076|cutC copper transporter homolog (E. coli)##BC011016|CUTC|51076|cutC copper transporter homolog (E. coli)##AF132966|CUTC|51076|cutC copper transporter homolog (E. coli)##AK302507|CUTC|51076|cutC copper transporter homolog (E. coli)##AK314687|CUTC|51076|cutC copper transporter homolog (E. coli)##AK001142|CUTC|51076|cutC copper transporter homolog (E. coli)##BC015059|CUTC|51076|cutC copper transporter homolog (E. coli)##BC021105|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_015960|CUTC|51076|cutC copper transporter homolog (E. coli)##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##AK128576|DNMBP|23268|dynamin binding protein	0.999366	0.0	denovo_WM_7:-13:0.872
chr10	105529082	105529177	reg1010270.p1	4.077	+	TSC_hg19_v1_chr10_-_105452931 AK294736 AK295314 AK315983 AK295660	-76179	-	TSC_hg19_v1_chr10_-_105437934 AK304828	-91208	-	TSC_hg19_v1_chr10_-_105421464 AK294454	-107680	-	TSC_hg19_v1_chr10_-_105615306 NM_014631	86141	-	TSC_hg19_v1_chr10_-_105677943 BC017400	148800	-	TSC_hg19_v1_chr10_-_105677986 NM_024928	148886	-	AK294736|SH3PXD2A|9644|SH3 and PX domains 2A##AK295314|SH3PXD2A|9644|SH3 and PX domains 2A##AK315983|SH3PXD2A|9644|SH3 and PX domains 2A##AK295660|SH3PXD2A|9644|SH3 and PX domains 2A##AK304828|SH3PXD2A|9644|SH3 and PX domains 2A##AK294454|SH3PXD2A|9644|SH3 and PX domains 2A##NM_014631|SH3PXD2A|9644|SH3 and PX domains 2A##BC017400|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1##NM_024928|OBFC1|79991|oligonucleotide/oligosaccharide-binding fold containing 1	1.92739	0.0	denovo_WM_7:56:0.574	denovo_WM_7:58:0.339	denovo_WM_7:85:0.310	denovo_WM_7:86:0.310	denovo_WM_7:87:0.310
chr1	8230108	8230236	reg1006861.p2	4.077	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-143774	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-143811	-	AB528431 AJ276373 DQ892137 DQ895331 BC012839 TSC_hg19_v1_chr1_-_8075752	-154457	-	NM_001080397	154217	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	253845	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	647420	-	NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AJ276373|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ892137|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ895331|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC012839|ERRFI1|54206|ERBB receptor feedback inhibitor 1##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats	0.999508	0.0	denovo_WM_7:-60:0.425	denovo_WM_7:-61:0.425
chr19	17201290	17201470	reg1002053.p2	4.077	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-14787	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-15059	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-63840	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	124792	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	124825	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	135654	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	0.0	0.0	
chr4	91108471	91108609	reg1010392.p1	4.077	+	AK097436 NM_001145065 AK310825 AB051467 BC021681	-59822	+	AK125557 AK313566 BC063848 NM_007351 U27109 AB385146 HQ258009	-292478	+	NM_001146055	-349094	-	BC051694 NM_207491	47641	+	AB209318 NM_001510 AK308611	2117052	+	BC113623 BC113625 BC069145 AB464463 BC069594 BC069604 CU686920 EU446465 HQ258191 NM_005172 BC069578	3641521	+	AK097436|FAM190A|401145|family with sequence similarity 190, member A##NM_001145065|FAM190A|401145|family with sequence similarity 190, member A##AK310825|FAM190A|401145|family with sequence similarity 190, member A##AB051467|FAM190A|401145|family with sequence similarity 190, member A##BC021681|FAM190A|401145|family with sequence similarity 190, member A##AK125557|MMRN1|22915|multimerin 1##AK313566|MMRN1|22915|multimerin 1##BC063848|MMRN1|22915|multimerin 1##NM_007351|MMRN1|22915|multimerin 1##U27109|MMRN1|22915|multimerin 1##HQ258009|MMRN1|22915|multimerin 1##NM_001146055|SNCA|6622|synuclein, alpha (non A4 component of amyloid precursor)##BC051694|FAM190A|401145|family with sequence similarity 190, member A##NM_207491|FAM190A|401145|family with sequence similarity 190, member A##AB209318|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001510|GRID2|2895|glutamate receptor, ionotropic, delta 2##AK308611|GRID2|2895|glutamate receptor, ionotropic, delta 2##BC113623|ATOH1|474|atonal homolog 1 (Drosophila)##BC113625|ATOH1|474|atonal homolog 1 (Drosophila)##BC069145|ATOH1|474|atonal homolog 1 (Drosophila)##BC069594|ATOH1|474|atonal homolog 1 (Drosophila)##BC069604|ATOH1|474|atonal homolog 1 (Drosophila)##EU446465|ATOH1|474|atonal homolog 1 (Drosophila)##HQ258191|ATOH1|474|atonal homolog 1 (Drosophila)##NM_005172|ATOH1|474|atonal homolog 1 (Drosophila)##BC069578|ATOH1|474|atonal homolog 1 (Drosophila)	0.993268	0.0	denovo_WM_7:-19:0.248	denovo_WM_7:-20:0.248	denovo_WM_7:-21:0.248	denovo_WM_7:-22:0.248
chr5	133296801	133296981	reg1015600.p1	4.077	+	NM_015082 TSC_hg19_v1_chr5_-_132948227 BC024300	-348653	-	TSC_hg19_v1_chr5_-_132948202 AK055684	-348692	-	TSC_hg19_v1_chr5_+_132432890 AK315862	-864000	+	DQ892022 DQ895214 TSC_hg19_v1_chr5_-_133304299 BC020875 AK298515 AK315362 AY157581 AK074963 NM_020199 AF226055	7484	-	TSC_hg19_v1_chr5_-_133340377 BC008482	43476	-	TSC_hg19_v1_chr5_-_133340386 BC090042	43492	-	NM_015082|FSTL4|23105|follistatin-like 4##BC024300|FSTL4|23105|follistatin-like 4##AK055684|FSTL4|23105|follistatin-like 4##AK315862|HSPA4|3308|heat shock 70kDa protein 4##DQ892022|C5orf15|56951|chromosome 5 open reading frame 15##DQ895214|C5orf15|56951|chromosome 5 open reading frame 15##BC020875|C5orf15|56951|chromosome 5 open reading frame 15##AK298515|C5orf15|56951|chromosome 5 open reading frame 15##AK315362|C5orf15|56951|chromosome 5 open reading frame 15##AY157581|C5orf15|56951|chromosome 5 open reading frame 15##AK074963|C5orf15|56951|chromosome 5 open reading frame 15##NM_020199|C5orf15|56951|chromosome 5 open reading frame 15##AF226055|C5orf15|56951|chromosome 5 open reading frame 15##BC008482|VDAC1|7416|voltage-dependent anion channel 1##BC090042|VDAC1|7416|voltage-dependent anion channel 1	2.898669	0.0	denovo_WM_7:-31:0.506	denovo_WM_7:-32:0.229	denovo_WM_7:40:0.533	denovo_WM_7:41:0.290	denovo_WM_7:55:0.283	denovo_WM_7:56:0.526
chr8	8228641	8228761	reg1016466.p1	4.077	+	TSC_hg19_v1_chr8_-_8175862 AF075060	-52813	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-142559	+	AK292586 NM_001193630	-444843	+	AK122582 NM_001080826	10521	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	330997	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	522237	-	AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1	1.991493	0.0	denovo_WM_7:86:0.998
chrX	41190242	41190341	reg1007725.p3	4.077	+	TSC_hg19_v1_chrX_+_40944880 NM_001039590 NM_001039591	-245419	+	TSC_hg19_v1_chrX_-_40595139 AK308871	-595162	-	TSC_hg19_v1_chrX_-_40594999 AK293070	-595311	-	AF000982 AF000983 NM_001193416 NM_001193417 NM_001356	2359	+	TSC_hg19_v1_chrX_+_41193414 AK291153 AK296906 AK297159 AK304689 AK310891 BC055083 AF086430 BC007668 AF061337 BC011819 AB208983 AB384807 AB451220 AB451343	3166	+	AK304661 TSC_hg19_v1_chrX_+_41193866 AK127902	3574	+	NM_001039590|USP9X|8239|ubiquitin specific peptidase 9, X-linked##NM_001039591|USP9X|8239|ubiquitin specific peptidase 9, X-linked##AK308871|MED14|9282|mediator complex subunit 14##AK293070|MED14|9282|mediator complex subunit 14##AF000982|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF000983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193416|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001193417|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##NM_001356|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK291153|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK296906|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK297159|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304689|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK310891|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC055083|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF086430|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC007668|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AF061337|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##BC011819|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB208983|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451220|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AB451343|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK304661|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked##AK127902|DDX3X|1654|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked	1.820399	0.0	denovo_WM_7:-15:0.697	denovo_WM_7:38:0.317	denovo_WM_7:39:0.517
chrX	41976776	41976854	reg1016991.p2	4.077	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	-194490	-	BC070180 NM_080817 AK122626 AK313702 AL832460	-393395	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-428548	+	BC044787 TSC_hg19_v1_chrX_+_43514289	1537408	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	1538599	+	TSC_hg19_v1_chrX_+_43515457 M68840	1538665	+	AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A##M68840|MAOA|4128|monoamine oxidase A	0.0	0.0	
chr10	102025753	102025933	reg1002790.p2	4.076	+	TSC_hg19_v1_chr10_-_101989343 NM_001278 AF080157	-36485	-	U22512 AF012890 AB590489 BC092514 TSC_hg19_v1_chr10_-_101989331 AF009225 AB209028	-36577	-	TSC_hg19_v1_chr10_-_101945787 AF064093 NM_001100626	-80041	-	AL832515 CU679081 AK023984 BC008746 AK001860 AK225590 TSC_hg19_v1_chr10_-_102027422 AK295303 AK097895 NM_018294	1543	-	BC020494 AY278457 AK054697 NM_001001342	20187	-	AY531265 AB463442 TSC_hg19_v1_chr10_-_102046438 AB593084 AK298969 NM_173809	20595	-	NM_001278|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF080157|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##U22512|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF012890|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##BC092514|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF009225|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AB209028|CHUK|1147|conserved helix-loop-helix ubiquitous kinase##AF064093|ERLIN1|10613|ER lipid raft associated 1##NM_001100626|ERLIN1|10613|ER lipid raft associated 1##AL832515|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK023984|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC008746|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK001860|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK225590|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK295303|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##AK097895|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##NM_018294|CWF19L1|55280|CWF19-like 1, cell cycle control (S. pombe)##BC020494|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY278457|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK054697|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_001001342|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AY531265|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AB593084|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##AK298969|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2##NM_173809|BLOC1S2|282991|biogenesis of lysosomal organelles complex-1, subunit 2	0.0	0.0	
chr11	90456113	90456191	reg1008371.p1	4.076	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-471742	+	AK290231 NM_001144073 NM_012124	-499621	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-499950	-	NM_001008781	1629109	+	BC069163 NM_005959 U25341 AY521019	2246687	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2474835	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.0	0.0	
chr1	45118623	45118759	reg1014780.p1	4.076	+	TSC_hg19_v1_chr1_+_45097700 AK296038 AK225180	-20929	+	AK056424 TSC_hg19_v1_chr1_+_44870926 BC034221 NM_018150	-247749	+	TSC_hg19_v1_chr1_-_44820942 AK026596	-297730	-	CR457348 AK026006 AK225405 TSC_hg19_v1_chr1_-_45140099 BC064520 NM_024587 AL832539	21396	-	AK296548 TSC_hg19_v1_chr1_-_45140143 BC007521	21457	-	BC026115 NM_001145636	21702	+	AK296038|RNF220|55182|ring finger protein 220##AK225180|RNF220|55182|ring finger protein 220##AK056424|RNF220|55182|ring finger protein 220##BC034221|RNF220|55182|ring finger protein 220##NM_018150|RNF220|55182|ring finger protein 220##AK026596|ERI3|79033|ERI1 exoribonuclease family member 3##CR457348|TMEM53|79639|transmembrane protein 53##AK026006|TMEM53|79639|transmembrane protein 53##AK225405|TMEM53|79639|transmembrane protein 53##BC064520|TMEM53|79639|transmembrane protein 53##NM_024587|TMEM53|79639|transmembrane protein 53##AL832539|TMEM53|79639|transmembrane protein 53##AK296548|TMEM53|79639|transmembrane protein 53##BC007521|TMEM53|79639|transmembrane protein 53##BC026115|C1orf228|339541|chromosome 1 open reading frame 228##NM_001145636|C1orf228|339541|chromosome 1 open reading frame 228	0.0	0.975903	CTCF.p2:26:0.976
chr15	23034690	23034782	reg1015517.p2	4.076	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-320	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-369	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-402	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	51638	-	BC025678 NM_001142275	52106	-	TSC_hg19_v1_chr15_-_23115247 BC044583	80512	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	0.045776	0.0	
chr16	23922336	23922510	reg1016476.p2	4.076	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-74917	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-75028	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-75091	+	BC037899 NM_006539 AK095553	344451	+	AK055453 TSC_hg19_v1_chr16_+_24267474	345051	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	345275	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	0.999621	0.0	
chr17	36180145	36180288	reg1012985.p1	4.076	+	TSC_hg19_v1_chr17_-_36105051 HM116553 HM116554 HM116555 HM116556 AK290131 AK296633 AK298393 BC017714 X58840 NM_000458 NM_001165923	-75165	-	AB528419 BT007126 CR536572 DQ891528 EU176615 TSC_hg19_v1_chr17_-_36104898	-75330	-	TSC_hg19_v1_chr17_-_36003470 AF077033 AK001652 AK093661 AX748248 BC041785 NM_007010	-176739	-	NM_001123391 NM_032258 AK313329 AK302064 BC078140 BC071680 AK301823 AL136860 BC047739	103777	+	BC033670 BC047739 AL136860 AK301823 BC071680 BC078140 AK302064 AK313329 NM_001123391 NM_032258	168409	-	BC067792 TSC_hg19_v1_chr17_-_36413224	233021	-	HM116553|HNF1B|6928|HNF1 homeobox B##HM116554|HNF1B|6928|HNF1 homeobox B##HM116555|HNF1B|6928|HNF1 homeobox B##HM116556|HNF1B|6928|HNF1 homeobox B##AK290131|HNF1B|6928|HNF1 homeobox B##AK296633|HNF1B|6928|HNF1 homeobox B##AK298393|HNF1B|6928|HNF1 homeobox B##BC017714|HNF1B|6928|HNF1 homeobox B##X58840|HNF1B|6928|HNF1 homeobox B##NM_000458|HNF1B|6928|HNF1 homeobox B##NM_001165923|HNF1B|6928|HNF1 homeobox B##BT007126|HNF1B|6928|HNF1 homeobox B##CR536572|HNF1B|6928|HNF1 homeobox B##DQ891528|HNF1B|6928|HNF1 homeobox B##EU176615|HNF1B|6928|HNF1 homeobox B##AF077033|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK001652|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##AK093661|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##BC041785|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_007010|DDX52|11056|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##AK313329|TBC1D3|729873|TBC1 domain family, member 3##AK302064|TBC1D3|729873|TBC1 domain family, member 3##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##BC047739|TBC1D3|729873|TBC1 domain family, member 3##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##BC078140|TBC1D3F|84218|TBC1 domain family, member 3F##AK302064|TBC1D3|729873|TBC1 domain family, member 3##AK313329|TBC1D3|729873|TBC1 domain family, member 3##NM_001123391|TBC1D3|729873|TBC1 domain family, member 3##NM_032258|TBC1D3F|84218|TBC1 domain family, member 3F##BC067792|LOC440434|440434|aminopeptidase puromycin sensitive pseudogene	0.886312	0.0	denovo_WM_7:21:0.813
chr19	19583013	19583124	reg1012097.p1	4.076	+	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	-86362	+	TSC_hg19_v1_chr19_+_19431662 AB385396	-151404	+	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	-151434	+	AB464723 DQ891603 DQ894797 AF329483 AK058166 AK313767 BC014611 NM_032037 AF348077	43297	-	TSC_hg19_v1_chr19_+_19626536 AF261134	43497	+	NM_015965 TSC_hg19_v1_chr19_+_19627033 BC009189 AK298891 AK293859 AK293965 BC000589 AF286697	43968	+	NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A##NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##DQ891603|TSSK6|83983|testis-specific serine kinase 6##DQ894797|TSSK6|83983|testis-specific serine kinase 6##AF329483|TSSK6|83983|testis-specific serine kinase 6##AK058166|TSSK6|83983|testis-specific serine kinase 6##AK313767|TSSK6|83983|testis-specific serine kinase 6##BC014611|TSSK6|83983|testis-specific serine kinase 6##NM_032037|TSSK6|83983|testis-specific serine kinase 6##AF348077|TSSK6|83983|testis-specific serine kinase 6##AF261134|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##NM_015965|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC009189|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AK293859|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC000589|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AF286697|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	0.986952	0.0	denovo_WM_7:81:0.916
chr21	45338256	45338324	reg1008608.p1	4.076	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-53167	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-53230	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	-128805	+	AK300562 NM_001037553	6988	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	94050	+	TSC_hg19_v1_chr21_+_45527202 AK314184	188912	+	NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.0	0.570677	CTCF.p2:-76:0.540
chr4	15787068	15787248	reg1003486.p2	4.076	+	TSC_hg19_v1_chr4_+_15779950 AK303169 NM_001775 D84276 AK313268 M34461 BC007964 D84277 DQ893184 EU176777 AK297592	-7187	+	TSC_hg19_v1_chr4_+_15704753 AB175627 AB590680 BT019502	-82399	+	TSC_hg19_v1_chr4_+_15704695 AK312497 BC012095	-82463	+	BC003628 M60047 BC008910 BC018852 AK291307 TSC_hg19_v1_chr4_-_15939972	152802	-	NM_005130	153204	-	AF361936 CU693032 DQ892062 DQ895256 AB529223 BC025720 AB021123 AY358978 NM_031950	177646	-	AK303169|CD38|952|CD38 molecule##NM_001775|CD38|952|CD38 molecule##D84276|CD38|952|CD38 molecule##AK313268|CD38|952|CD38 molecule##M34461|CD38|952|CD38 molecule##BC007964|CD38|952|CD38 molecule##D84277|CD38|952|CD38 molecule##DQ893184|CD38|952|CD38 molecule##EU176777|CD38|952|CD38 molecule##AK297592|CD38|952|CD38 molecule##AB175627|BST1|683|bone marrow stromal cell antigen 1##BT019502|BST1|683|bone marrow stromal cell antigen 1##AK312497|BST1|683|bone marrow stromal cell antigen 1##BC012095|BST1|683|bone marrow stromal cell antigen 1##BC003628|FGFBP1|9982|fibroblast growth factor binding protein 1##M60047|FGFBP1|9982|fibroblast growth factor binding protein 1##BC008910|FGFBP1|9982|fibroblast growth factor binding protein 1##BC018852|FGFBP1|9982|fibroblast growth factor binding protein 1##AK291307|FGFBP1|9982|fibroblast growth factor binding protein 1##NM_005130|FGFBP1|9982|fibroblast growth factor binding protein 1##AF361936|FGFBP2|83888|fibroblast growth factor binding protein 2##DQ892062|FGFBP2|83888|fibroblast growth factor binding protein 2##DQ895256|FGFBP2|83888|fibroblast growth factor binding protein 2##BC025720|FGFBP2|83888|fibroblast growth factor binding protein 2##AB021123|FGFBP2|83888|fibroblast growth factor binding protein 2##AY358978|FGFBP2|83888|fibroblast growth factor binding protein 2##NM_031950|FGFBP2|83888|fibroblast growth factor binding protein 2	0.98468	0.0	denovo_WM_7:7:0.948
chr6	146057345	146057444	reg1014370.p1	4.076	+	TSC_hg19_v1_chr6_-_146056897 AF284580 NM_001018041 NM_005670 AF454491 AK299497	-367	-	BC070047 TSC_hg19_v1_chr6_-_146056659	-734	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	-793	-	TSC_hg19_v1_chr6_-_146135899 BC024326	78466	-	TSC_hg19_v1_chr6_-_146135919 NM_032145	78528	-	TSC_hg19_v1_chr6_+_146136030 AK311235	78644	+	AF284580|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##NM_001018041|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##NM_005670|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454491|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AK299497|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC070047|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC024326|FBXO30|84085|F-box protein 30##NM_032145|FBXO30|84085|F-box protein 30##AK311235|LOC100507557|100507557|uncharacterized LOC100507557	1.416976	0.0	denovo_WM_7:23:0.457	denovo_WM_7:24:0.457
chr9	123476732	123476912	reg1016522.p1	4.076	+	TSC_hg19_v1_chr9_-_123476749 AY358370 AK295380 NM_001080497	-105	-	AB489151 BC136275 BC143732 BC143734 BC143753 BC143755 BC143760 BC143762 BC143764 TSC_hg19_v1_chr9_-_123342438 AF448860 AB046853 BC146782 BC019577 BX537421 AL833481 BX537759 AK122913 BX537708 NM_001011649 NM_018249	-134469	-	BC071702 BC065196 AF027734 BC021560 AK293649 TSC_hg19_v1_chr9_-_122131727 NM_014618	-1345164	-	AF176698 TSC_hg19_v1_chr9_-_123555558	78723	-	TSC_hg19_v1_chr9_-_123555628 BC110334 AF145024 AF193594	78799	-	BC000239 TSC_hg19_v1_chr9_-_123555670 BC018738 AK300066 AK314385 AK022484 NM_012164	78874	-	AY358370|MEGF9|1955|multiple EGF-like-domains 9##AK295380|MEGF9|1955|multiple EGF-like-domains 9##NM_001080497|MEGF9|1955|multiple EGF-like-domains 9##BC136275|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143732|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143734|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143753|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143755|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143760|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143762|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143764|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AF448860|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AB046853|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC146782|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC019577|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537421|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AL833481|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537759|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AK122913|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537708|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_001011649|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_018249|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC071702|DBC1|1620|deleted in bladder cancer 1##BC065196|DBC1|1620|deleted in bladder cancer 1##AF027734|DBC1|1620|deleted in bladder cancer 1##BC021560|DBC1|1620|deleted in bladder cancer 1##AK293649|DBC1|1620|deleted in bladder cancer 1##NM_014618|DBC1|1620|deleted in bladder cancer 1##AF176698|FBXW2|26190|F-box and WD repeat domain containing 2##BC110334|FBXW2|26190|F-box and WD repeat domain containing 2##AF145024|FBXW2|26190|F-box and WD repeat domain containing 2##AF193594|FBXW2|26190|F-box and WD repeat domain containing 2##BC000239|FBXW2|26190|F-box and WD repeat domain containing 2##BC018738|FBXW2|26190|F-box and WD repeat domain containing 2##AK300066|FBXW2|26190|F-box and WD repeat domain containing 2##AK314385|FBXW2|26190|F-box and WD repeat domain containing 2##AK022484|FBXW2|26190|F-box and WD repeat domain containing 2##NM_012164|FBXW2|26190|F-box and WD repeat domain containing 2	0.0	0.0	
chr10	32330428	32330543	reg1017208.p1	4.075	+	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	-112700	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	-112761	-	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-720396	+	TSC_hg19_v1_chr10_-_32344938 AB462413	14447	-	BC126279 BC126281 TSC_hg19_v1_chr10_-_32345152 X65873	14683	-	TSC_hg19_v1_chr10_-_32345335 BC080604 BC010885 BC111042 AK289413 AK299542 BC065267 AK307502	14829	-	AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##BC126279|KIF5B|3799|kinesin family member 5B##BC126281|KIF5B|3799|kinesin family member 5B##X65873|KIF5B|3799|kinesin family member 5B##BC080604|KIF5B|3799|kinesin family member 5B##BC010885|KIF5B|3799|kinesin family member 5B##BC111042|KIF5B|3799|kinesin family member 5B##AK289413|KIF5B|3799|kinesin family member 5B##AK299542|KIF5B|3799|kinesin family member 5B##BC065267|KIF5B|3799|kinesin family member 5B##AK307502|KIF5B|3799|kinesin family member 5B	0.765774	0.0	denovo_WM_7:-91:0.688
chr10	62985799	62985950	reg1012645.p1	4.075	+	AK075129 BC093035 TSC_hg19_v1_chr10_-_62761269	-224634	-	BC041791 AB018283 BC032848 TSC_hg19_v1_chr10_-_62704033 NM_001242359 NM_014836 AK307630	-281922	-	TSC_hg19_v1_chr10_+_62538253 BC107750 AK291939	-447603	+	BC042872 TSC_hg19_v1_chr10_-_63212971 AK125611	227085	-	CR749606 NM_178505	227333	-	BC041932 NM_173554	436844	+	AK075129|RHOBTB1|9886|Rho-related BTB domain containing 1##BC093035|RHOBTB1|9886|Rho-related BTB domain containing 1##BC041791|RHOBTB1|9886|Rho-related BTB domain containing 1##AB018283|RHOBTB1|9886|Rho-related BTB domain containing 1##BC032848|RHOBTB1|9886|Rho-related BTB domain containing 1##NM_001242359|RHOBTB1|9886|Rho-related BTB domain containing 1##NM_014836|RHOBTB1|9886|Rho-related BTB domain containing 1##AK307630|RHOBTB1|9886|Rho-related BTB domain containing 1##BC107750|CDK1|983|cyclin-dependent kinase 1##AK291939|CDK1|983|cyclin-dependent kinase 1##BC042872|TMEM26|219623|transmembrane protein 26##AK125611|TMEM26|219623|transmembrane protein 26##CR749606|TMEM26|219623|transmembrane protein 26##NM_178505|TMEM26|219623|transmembrane protein 26##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107	0.223102	0.0	
chr14	91322595	91322732	reg1013725.p2	4.075	+	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-39898	-	AB527232 TSC_hg19_v1_chr14_-_91282750	-39965	-	TSC_hg19_v1_chr14_+_90863372 BC011834 BC047523 U16851 BC000454 BC008597 AK289937 M27319	-459236	+	TSC_hg19_v1_chr14_-_91526731 CU677851	204091	-	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	204307	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	257742	+	NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##BC011834|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC047523|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##U16851|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC000454|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008597|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AK289937|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##M27319|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159	0.99585	0.0	
chr18	67736360	67736499	reg1014396.p2	4.075	+	GU935335 GU935336 U56102 NM_006566	-112234	-	AK313199 TSC_hg19_v1_chr18_-_67615110	-121330	-	TSC_hg19_v1_chr18_+_67068214 NM_152721 AY599248 BC096744	-668199	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	136509	-	NM_004232 TSC_hg19_v1_chr18_+_67956194	219738	+	TSC_hg19_v1_chr18_+_67956280 BC020082	219832	+	GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule##AK313199|CD226|10666|CD226 molecule##NM_152721|DOK6|220164|docking protein 6##AY599248|DOK6|220164|docking protein 6##BC096744|DOK6|220164|docking protein 6##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC020082|SOCS6|9306|suppressor of cytokine signaling 6	0.0	0.0	
chr20	43013613	43013782	reg1013146.p2	4.075	+	TSC_hg19_v1_chr20_+_42984338 AY680696 AY680697 AY680698 NM_001030003 NM_001030004 NM_175914 FJ608822 HQ692868	-29306	+	TSC_hg19_v1_chr20_+_42984088 AK096973	-29604	+	NM_178491	-48072	+	TSC_hg19_v1_chr20_-_43024303 AF143870	10627	-	TSC_hg19_v1_chr20_+_43029888 Z49825 NM_000457 NM_178849 NM_178850	16197	+	X87872 X87870 TSC_hg19_v1_chr20_+_43029954 X87871	16249	+	AY680696|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680697|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680698|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_001030003|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_001030004|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_175914|HNF4A|3172|hepatocyte nuclear factor 4, alpha##FJ608822|HNF4A|3172|hepatocyte nuclear factor 4, alpha##HQ692868|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AK096973|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_178491|R3HDML|140902|R3H domain containing-like##Z49825|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_000457|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_178849|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_178850|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X87872|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X87870|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X87871|HNF4A|3172|hepatocyte nuclear factor 4, alpha	1.974268	0.0	denovo_WM_7:7:0.973	denovo_WM_7:22:0.973
chr2	65228870	65229050	reg1016868.p2	4.075	+	TSC_hg19_v1_chr2_+_65216532 AK223486 AK313052 BC072423 BC026216 L14595 L19444 AB026689 DQ891127 DQ894306	-12310	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	-12469	+	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	-13360	+	TSC_hg19_v1_chr2_+_65283579 AB011154 NM_015147 AK093846 AK000856 AK299373 AK304110 AK301173 AK098786 BX648774 BC030534 BC002982 BC004873	54600	+	AF498929 BT019528 BT019529 CR533479 CR536488 AB464118 AB590355 AM392684 CU674450 DQ894084 EU831590 EU831675 TSC_hg19_v1_chr2_-_65357083 M28209	128115	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	128259	-	AK223486|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK313052|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC072423|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC026216|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L14595|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L19444|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB026689|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ891127|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ894306|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB011154|CEP68|23177|centrosomal protein 68kDa##NM_015147|CEP68|23177|centrosomal protein 68kDa##AK093846|CEP68|23177|centrosomal protein 68kDa##AK000856|CEP68|23177|centrosomal protein 68kDa##AK299373|CEP68|23177|centrosomal protein 68kDa##AK304110|CEP68|23177|centrosomal protein 68kDa##AK301173|CEP68|23177|centrosomal protein 68kDa##AK098786|CEP68|23177|centrosomal protein 68kDa##BX648774|CEP68|23177|centrosomal protein 68kDa##BC030534|CEP68|23177|centrosomal protein 68kDa##BC002982|CEP68|23177|centrosomal protein 68kDa##BC004873|CEP68|23177|centrosomal protein 68kDa##AF498929|RAB1A|5861|RAB1A, member RAS oncogene family##BT019528|RAB1A|5861|RAB1A, member RAS oncogene family##BT019529|RAB1A|5861|RAB1A, member RAS oncogene family##CR533479|RAB1A|5861|RAB1A, member RAS oncogene family##CR536488|RAB1A|5861|RAB1A, member RAS oncogene family##AM392684|RAB1A|5861|RAB1A, member RAS oncogene family##DQ894084|RAB1A|5861|RAB1A, member RAS oncogene family##EU831590|RAB1A|5861|RAB1A, member RAS oncogene family##EU831675|RAB1A|5861|RAB1A, member RAS oncogene family##M28209|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family	0.835353	0.0	denovo_WM_7:33:0.471
chr10	75329623	75329803	reg1010983.p1	4.074	+	TSC_hg19_v1_chr10_-_75255763 M29550 M29551 BC028049 NM_001142353 NM_001142354 NM_021132	-73945	-	AJ488506 TSC_hg19_v1_chr10_-_75255746 BC035464	-73981	-	AB489159 TSC_hg19_v1_chr10_-_75255664 AK301582	-74043	-	AJ583820 NM_152586	5710	-	TSC_hg19_v1_chr10_-_75401273 AL359210 AF240633 AY013297 AK300683 AK308200	71535	-	TSC_hg19_v1_chr10_-_75401524 AJ278124 BC025753 NM_021245	71811	-	M29550|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##M29551|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##BC028049|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##NM_001142353|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##NM_001142354|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##NM_021132|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##AJ488506|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##BC035464|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##AK301582|PPP3CB|5532|protein phosphatase 3, catalytic subunit, beta isozyme##AJ583820|USP54|159195|ubiquitin specific peptidase 54##NM_152586|USP54|159195|ubiquitin specific peptidase 54##AL359210|MYOZ1|58529|myozenin 1##AF240633|MYOZ1|58529|myozenin 1##AY013297|MYOZ1|58529|myozenin 1##AK300683|MYOZ1|58529|myozenin 1##AK308200|MYOZ1|58529|myozenin 1##AJ278124|MYOZ1|58529|myozenin 1##BC025753|MYOZ1|58529|myozenin 1##NM_021245|MYOZ1|58529|myozenin 1	1.992079	0.0	
chr11	63742096	63742197	reg1014772.p2	4.074	+	TSC_hg19_v1_chr11_+_63742069 BC063025 NM_004074 BC000501 AK311934 BT009803 CR407687	-63	+	TSC_hg19_v1_chr11_+_63706473 NM_024771 AK023910 AK300451 AK303557 JF263566 BC041617 BC052298	-35662	+	TSC_hg19_v1_chr11_-_63684632 AB593132	-57507	-	AK098029 NM_017670	11178	+	TSC_hg19_v1_chr11_+_63753896 AK000120	11715	+	BC010368 BC107701 TSC_hg19_v1_chr11_+_63753917 AK303228 AF161381 AK225133 AL096714 AK091830 BC007519 AY177200 CU675687 CU679683	11774	+	BC063025|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_004074|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BC000501|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##AK311934|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##BT009803|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##CR407687|COX8A|1351|cytochrome c oxidase subunit VIIIA (ubiquitous)##NM_024771|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK023910|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK300451|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AK303557|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##JF263566|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC041617|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##BC052298|NAA40|79829|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)##AB593132|RCOR2|283248|REST corepressor 2##AK098029|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##NM_017670|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK000120|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC010368|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC107701|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK303228|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AF161381|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK225133|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AL096714|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AK091830|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##BC007519|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1##AY177200|OTUB1|55611|OTU domain, ubiquitin aldehyde binding 1	0.0	0.0	
chr1	167538309	167538381	reg1012477.p1	4.074	+	TSC_hg19_v1_chr1_-_167523043 NM_003851	-15282	-	DQ891131 DQ894310 AB463481 AY359071 BC006786 BC008628 TSC_hg19_v1_chr1_-_167523000 AK130006 AK315497 AK075375 AK095456 AF084523	-15354	-	AB590419 CU693020 DQ893778 EU176191 X55510 X55511 X55512 BC025703 AK128376 AK313946 J04132 AK223325 NM_000734 NM_198053	-50572	-	AF545852 TSC_hg19_v1_chr1_+_167599495 NM_052862 AK130798	61068	+	TSC_hg19_v1_chr1_+_167599557 AL137762 BC101536 BC101562 BC143428	61224	+	TSC_hg19_v1_chr1_+_167691226 NM_001146191 NM_003953 NM_024569 AK297112 AK075334 AK307250 AK291249 AY359019 AF181660 AF478447 BC000984 BC007881 AF095727 AF087020 AF092425 AF095726 AK315546 AB527648 AF239756 BT019542 CR542160 HQ447352	152983	+	NM_003851|CREG1|8804|cellular repressor of E1A-stimulated genes 1##DQ891131|CREG1|8804|cellular repressor of E1A-stimulated genes 1##DQ894310|CREG1|8804|cellular repressor of E1A-stimulated genes 1##AY359071|CREG1|8804|cellular repressor of E1A-stimulated genes 1##BC006786|CREG1|8804|cellular repressor of E1A-stimulated genes 1##BC008628|CREG1|8804|cellular repressor of E1A-stimulated genes 1##AK130006|CREG1|8804|cellular repressor of E1A-stimulated genes 1##AK315497|CREG1|8804|cellular repressor of E1A-stimulated genes 1##AK075375|CREG1|8804|cellular repressor of E1A-stimulated genes 1##AK095456|CREG1|8804|cellular repressor of E1A-stimulated genes 1##AF084523|CREG1|8804|cellular repressor of E1A-stimulated genes 1##DQ893778|CD247|919|CD247 molecule##EU176191|CD247|919|CD247 molecule##X55510|CD247|919|CD247 molecule##X55511|CD247|919|CD247 molecule##X55512|CD247|919|CD247 molecule##BC025703|CD247|919|CD247 molecule##AK128376|CD247|919|CD247 molecule##AK313946|CD247|919|CD247 molecule##J04132|CD247|919|CD247 molecule##AK223325|CD247|919|CD247 molecule##NM_000734|CD247|919|CD247 molecule##NM_198053|CD247|919|CD247 molecule##AF545852|RCSD1|92241|RCSD domain containing 1##NM_052862|RCSD1|92241|RCSD domain containing 1##AL137762|RCSD1|92241|RCSD domain containing 1##BC101536|RCSD1|92241|RCSD domain containing 1##BC101562|RCSD1|92241|RCSD domain containing 1##BC143428|RCSD1|92241|RCSD domain containing 1##NM_001146191|MPZL1|9019|myelin protein zero-like 1##NM_003953|MPZL1|9019|myelin protein zero-like 1##NM_024569|MPZL1|9019|myelin protein zero-like 1##AK297112|MPZL1|9019|myelin protein zero-like 1##AK075334|MPZL1|9019|myelin protein zero-like 1##AK307250|MPZL1|9019|myelin protein zero-like 1##AK291249|MPZL1|9019|myelin protein zero-like 1##AY359019|MPZL1|9019|myelin protein zero-like 1##AF181660|MPZL1|9019|myelin protein zero-like 1##AF478447|MPZL1|9019|myelin protein zero-like 1##BC000984|MPZL1|9019|myelin protein zero-like 1##BC007881|MPZL1|9019|myelin protein zero-like 1##AF095727|MPZL1|9019|myelin protein zero-like 1##AF087020|MPZL1|9019|myelin protein zero-like 1##AF092425|MPZL1|9019|myelin protein zero-like 1##AF095726|MPZL1|9019|myelin protein zero-like 1##AK315546|MPZL1|9019|myelin protein zero-like 1##AF239756|MPZL1|9019|myelin protein zero-like 1##BT019542|MPZL1|9019|myelin protein zero-like 1##CR542160|MPZL1|9019|myelin protein zero-like 1##HQ447352|MPZL1|9019|myelin protein zero-like 1	0.99566	0.0	denovo_WM_7:-11:0.456	denovo_WM_7:-12:0.456
chr12	31470155	31470335	reg1003451.p1	4.074	+	BC047317 BC050522 X99583 AK303139 TSC_hg19_v1_chr12_+_31226840 U33833 U75967 BC001591	-243372	+	TSC_hg19_v1_chr12_+_31226805 U75968 BC011264	-243437	+	TSC_hg19_v1_chr12_+_31226789 BC148224 BC111733 NM_004399 NM_030653 NM_152438 AK297607 BC050069	-243467	+	TSC_hg19_v1_chr12_-_31477084 AK294457	6842	-	BC071966 TSC_hg19_v1_chr12_-_31479052 BC004462 AK027736 AF087885 AK026932 AL157432	8813	-	TSC_hg19_v1_chr12_-_31479085 AF212220	8856	-	BC047317|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC050522|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##X99583|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK303139|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##U33833|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##U75967|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC001591|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##U75968|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC011264|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC148224|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##NM_004399|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##NM_030653|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##NM_152438|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK297607|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC050069|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##AK294457|FAM60A|58516|family with sequence similarity 60, member A##BC071966|FAM60A|58516|family with sequence similarity 60, member A##BC004462|FAM60A|58516|family with sequence similarity 60, member A##AF087885|FAM60A|58516|family with sequence similarity 60, member A##AK026932|FAM60A|58516|family with sequence similarity 60, member A##AL157432|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A	1.023269	0.0	denovo_WM_7:35:0.441	denovo_WM_7:36:0.447
chr1	38391794	38391904	reg1006785.p1	4.074	+	TSC_hg19_v1_chr1_-_38325265 X78710 AK225923 AK298751 AK309584 AK314233 BC014454 NM_005955	-66591	-	AY517499 TSC_hg19_v1_chr1_+_38273967 BC107856 BC057819 AK127381 BC102041 BC127187 BC127188 BC141938	-117939	+	TSC_hg19_v1_chr1_-_38273855 AY172561 NM_024640 BC080186	-117978	-	TSC_hg19_v1_chr1_-_38397424 AK022846	5586	-	TSC_hg19_v1_chr1_-_38412689 AL833055 BC058932	20833	-	TSC_hg19_v1_chr1_-_38412717 BC062317 AK310824	20862	-	X78710|MTF1|4520|metal-regulatory transcription factor 1##AK225923|MTF1|4520|metal-regulatory transcription factor 1##AK298751|MTF1|4520|metal-regulatory transcription factor 1##AK309584|MTF1|4520|metal-regulatory transcription factor 1##AK314233|MTF1|4520|metal-regulatory transcription factor 1##BC014454|MTF1|4520|metal-regulatory transcription factor 1##NM_005955|MTF1|4520|metal-regulatory transcription factor 1##AY517499|C1orf122|127687|chromosome 1 open reading frame 122##BC107856|C1orf122|127687|chromosome 1 open reading frame 122##BC057819|C1orf122|127687|chromosome 1 open reading frame 122##AK127381|C1orf122|127687|chromosome 1 open reading frame 122##BC102041|C1orf122|127687|chromosome 1 open reading frame 122##BC127187|C1orf122|127687|chromosome 1 open reading frame 122##BC127188|C1orf122|127687|chromosome 1 open reading frame 122##AY172561|YRDC|79693|yrdC domain containing (E. coli)##NM_024640|YRDC|79693|yrdC domain containing (E. coli)##BC080186|YRDC|79693|yrdC domain containing (E. coli)##AK022846|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##AL833055|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC058932|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##BC062317|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa##AK310824|INPP5B|3633|inositol polyphosphate-5-phosphatase, 75kDa	0.0	0.0	
chr15	20814902	20815027	reg1014992.p1	4.074	+	NM_001145004	-67851	-	TSC_hg19_v1_chr15_-_20711449 BC070076 BC033888 BC094757	-103527	-	None	None	None	NM_207355 BC066981	257014	-	NM_207355 BC066981	1268174	-	BC136985 NM_001004719	1553513	+	NM_001145004|GOLGA6L6|727832|golgin A6 family-like 6##BC033888|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##BC094757|HERC2P3|283755|hect domain and RLD 2 pseudogene 3##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2	0.105642	0.994178	CTCF.p2:46:0.994
chr2	102720637	102720703	reg1006639.p2	4.074	+	BC027733 BC012346 NM_173343	-105213	+	BC039031 NM_004633 AK130412 AK309161 TSC_hg19_v1_chr2_+_102608421	-112307	+	TSC_hg19_v1_chr2_+_102508389 BC054038 BC010909 BC040077 BC065036 BC051791	-212138	+	TSC_hg19_v1_chr2_+_102759205 X16896	38562	+	M27492 NM_000877 BC067507 BC067508 BC067506 BC075062 BC075063	49750	+	AF284434 NM_003854 U49065 BC107064	82778	+	BC027733|IL1R2|7850|interleukin 1 receptor, type II##BC012346|IL1R2|7850|interleukin 1 receptor, type II##NM_173343|IL1R2|7850|interleukin 1 receptor, type II##BC039031|IL1R2|7850|interleukin 1 receptor, type II##NM_004633|IL1R2|7850|interleukin 1 receptor, type II##AK130412|IL1R2|7850|interleukin 1 receptor, type II##AK309161|IL1R2|7850|interleukin 1 receptor, type II##BC054038|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC010909|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC040077|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC065036|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##BC051791|MAP4K4|9448|mitogen-activated protein kinase kinase kinase kinase 4##X16896|IL1R1|3554|interleukin 1 receptor, type I##M27492|IL1R1|3554|interleukin 1 receptor, type I##NM_000877|IL1R1|3554|interleukin 1 receptor, type I##BC067507|IL1R1|3554|interleukin 1 receptor, type I##BC067508|IL1R1|3554|interleukin 1 receptor, type I##BC067506|IL1R1|3554|interleukin 1 receptor, type I##BC075062|IL1R1|3554|interleukin 1 receptor, type I##BC075063|IL1R1|3554|interleukin 1 receptor, type I##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2	0.0	0.0	
chr3	147632424	147632512	reg1016767.p1	4.074	+	BC104848 BC104850 TSC_hg19_v1_chr3_+_147127864 AB464362	-504606	+	TSC_hg19_v1_chr3_+_147127156 NM_003412	-505297	+	NM_001243256 NM_032153	-507873	-	NM_000685 NM_004835 NM_009585 NM_031850 TSC_hg19_v1_chr3_+_148415688 AK291541 BC068494 BC022447 M87290 S77410 X65699	783219	+	NM_032049	815498	+	NM_001871 M81057 AK313940 AJ224866 BC015338 DQ890547 DQ893706 BT009910	913130	+	BC104848|ZIC1|7545|Zic family member 1##BC104850|ZIC1|7545|Zic family member 1##NM_003412|ZIC1|7545|Zic family member 1##NM_001243256|ZIC4|84107|Zic family member 4##NM_032153|ZIC4|84107|Zic family member 4##NM_000685|AGTR1|185|angiotensin II receptor, type 1##NM_004835|AGTR1|185|angiotensin II receptor, type 1##NM_009585|AGTR1|185|angiotensin II receptor, type 1##NM_031850|AGTR1|185|angiotensin II receptor, type 1##AK291541|AGTR1|185|angiotensin II receptor, type 1##BC068494|AGTR1|185|angiotensin II receptor, type 1##BC022447|AGTR1|185|angiotensin II receptor, type 1##M87290|AGTR1|185|angiotensin II receptor, type 1##S77410|AGTR1|185|angiotensin II receptor, type 1##X65699|AGTR1|185|angiotensin II receptor, type 1##NM_032049|AGTR1|185|angiotensin II receptor, type 1##NM_001871|CPB1|1360|carboxypeptidase B1 (tissue)##M81057|CPB1|1360|carboxypeptidase B1 (tissue)##AK313940|CPB1|1360|carboxypeptidase B1 (tissue)##AJ224866|CPB1|1360|carboxypeptidase B1 (tissue)##BC015338|CPB1|1360|carboxypeptidase B1 (tissue)##DQ890547|CPB1|1360|carboxypeptidase B1 (tissue)##DQ893706|CPB1|1360|carboxypeptidase B1 (tissue)##BT009910|CPB1|1360|carboxypeptidase B1 (tissue)	0.0	0.0	
chr5	108017491	108017671	reg1014764.p2	4.074	+	BC063316 NM_001163315	-299783	-	TSC_hg19_v1_chr5_-_107717106 AK126722	-300451	-	AK308672 NM_001962 U26403	-1010991	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	46399	-	AK293376 J03358 NM_005246 AK296874	65981	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	67091	+	BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AB593118|HP07349|100652853|uncharacterized protein HP07349##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase	1.838885	0.0	denovo_WM_7:68:0.219	denovo_WM_7:69:0.640	denovo_WM_7:84:0.748
chr6	138961111	138961190	reg1012739.p2	4.074	+	TSC_hg19_v1_chr6_-_138893682 NM_020464	-67442	-	TSC_hg19_v1_chr6_-_138820580 AK092744 AX747703	-140534	-	AK307584 NM_001144060 TSC_hg19_v1_chr6_-_138820579	-140572	-	TSC_hg19_v1_chr6_+_139013613 AK128874	52463	+	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	133640	+	AK092592 AX747618 NM_001242740	133651	-	NM_020464|NHSL1|57224|NHS-like 1##AK307584|NHSL1|57224|NHS-like 1##NM_001144060|NHSL1|57224|NHS-like 1##AK128874|FLJ46906|441172|uncharacterized LOC441172##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A##AK092592|LOC100507462|100507462|uncharacterized LOC100507462##NM_001242740|LOC100507462|100507462|uncharacterized LOC100507462	0.0	0.0	
chr9	6646491	6646649	reg1011476.p1	4.074	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-943	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-233165	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-233373	+	AK310439 NM_001146696	74292	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	111097	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	111469	+	BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C	0.997894	0.0	denovo_WM_7:95:0.435	denovo_WM_7:96:0.435
chr11	69216592	69216711	reg1013405.p1	4.073	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	-155029	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-359125	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-400225	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	239205	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	239259	+	BC000076 BC001501 BC014078 TSC_hg19_v1_chr11_+_69455939 M73554 BC023620	239299	+	AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1##BC000076|CCND1|595|cyclin D1##BC001501|CCND1|595|cyclin D1##BC014078|CCND1|595|cyclin D1##M73554|CCND1|595|cyclin D1##BC023620|CCND1|595|cyclin D1	0.0	0.0	
chr14	24059897	24060008	reg1015610.p1	4.073	+	BC055429 TSC_hg19_v1_chr14_-_24048004 AB058734 NM_001146028 NM_032452	-11952	-	TSC_hg19_v1_chr14_-_24047779 AK091572 AX747068	-12154	-	AK290511 TSC_hg19_v1_chr14_-_24047453	-12485	-	AK222857 NM_005794 NM_182908 AK309945 BC002786 U31875	45626	+	TSC_hg19_v1_chr14_-_24422882 BX247982	362924	-	TSC_hg19_v1_chr14_+_24422978 AY616182 DQ344810 NM_021004 AY358638 AF064256 AF044127 AK001870 AK308436 DQ325464 AK314448 AY071856 BC003019 AK301201 DQ338571	363075	+	BC055429|JPH4|84502|junctophilin 4##AB058734|JPH4|84502|junctophilin 4##NM_001146028|JPH4|84502|junctophilin 4##NM_032452|JPH4|84502|junctophilin 4##AK091572|JPH4|84502|junctophilin 4##AK290511|JPH4|84502|junctophilin 4##AK222857|DHRS2|10202|dehydrogenase/reductase (SDR family) member 2##NM_005794|DHRS2|10202|dehydrogenase/reductase (SDR family) member 2##NM_182908|DHRS2|10202|dehydrogenase/reductase (SDR family) member 2##AK309945|DHRS2|10202|dehydrogenase/reductase (SDR family) member 2##BC002786|DHRS2|10202|dehydrogenase/reductase (SDR family) member 2##U31875|DHRS2|10202|dehydrogenase/reductase (SDR family) member 2##BX247982|C14orf167|55449|chromosome 14 open reading frame 167##AY616182|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##DQ344810|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##NM_021004|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AY358638|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AF064256|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AF044127|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AK001870|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AK308436|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##DQ325464|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AK314448|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##AY071856|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##BC003019|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4##DQ338571|DHRS4|10901|dehydrogenase/reductase (SDR family) member 4	1.757814	0.0	denovo_WM_7:5:0.747
chr1	46011346	46011481	reg1011805.p1	4.073	+	NM_001202431	-22852	-	X67951 L19184 TSC_hg19_v1_chr1_-_45987557 AK311898 BC007063 AK131049 BC021683 NM_002574 NM_181696 NM_181697	-23835	-	AK098537 NM_015506 TSC_hg19_v1_chr1_+_45965990 AL080062 BC006122	-45474	+	NM_001202413 NM_001202414 NM_006066 NM_153326 TSC_hg19_v1_chr1_+_46016497 AK311175 AK307068	5075	+	TSC_hg19_v1_chr1_+_46016568 BC000670 AK307237 AK307288	5134	+	TSC_hg19_v1_chr1_+_46016747 AK293083 BC005394	5319	+	NM_001202431|PRDX1|5052|peroxiredoxin 1##X67951|PRDX1|5052|peroxiredoxin 1##L19184|PRDX1|5052|peroxiredoxin 1##AK311898|PRDX1|5052|peroxiredoxin 1##BC007063|PRDX1|5052|peroxiredoxin 1##AK131049|PRDX1|5052|peroxiredoxin 1##BC021683|PRDX1|5052|peroxiredoxin 1##NM_002574|PRDX1|5052|peroxiredoxin 1##NM_181696|PRDX1|5052|peroxiredoxin 1##NM_181697|PRDX1|5052|peroxiredoxin 1##AK098537|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_015506|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##AL080062|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##BC006122|MMACHC|25974|methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria##NM_001202413|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_001202414|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_006066|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##NM_153326|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307068|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##BC000670|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307237|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK307288|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##AK293083|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)##BC005394|AKR1A1|10327|aldo-keto reductase family 1, member A1 (aldehyde reductase)	0.988502	0.0	denovo_WM_7:55:0.813
chr19	45542322	45542502	reg1002812.p1	4.073	+	TSC_hg19_v1_chr19_+_45542313 AF042800 NM_007056 AK293333 AY358944 BC013178	-89	+	TSC_hg19_v1_chr19_+_45504729 M83221 NM_006509 BC028013 AK290594	-37670	+	TSC_hg19_v1_chr19_+_45458649 BC012359 BT007262 CU680306 DQ892236 DQ895436	-83758	+	BC019352 NM_145288	37275	-	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	40101	+	TSC_hg19_v1_chr19_+_45596205 BC035704	53803	+	AF042800|CLASRP|11129|CLK4-associating serine/arginine rich protein##NM_007056|CLASRP|11129|CLK4-associating serine/arginine rich protein##AK293333|CLASRP|11129|CLK4-associating serine/arginine rich protein##AY358944|CLASRP|11129|CLK4-associating serine/arginine rich protein##BC013178|CLASRP|11129|CLK4-associating serine/arginine rich protein##M83221|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##NM_006509|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC028013|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##AK290594|RELB|5971|v-rel reticuloendotheliosis viral oncogene homolog B##BC012359|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BT007262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ892236|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##DQ895436|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC019352|ZNF296|162979|zinc finger protein 296##NM_145288|ZNF296|162979|zinc finger protein 296##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37	0.0	0.0	
chr2	61199744	61199924	reg1001332.p4	4.073	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	-91047	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	-91097	+	TSC_hg19_v1_chr2_+_61108702 AK303926	-91129	+	TSC_hg19_v1_chr2_-_61244326 AK291729 BC065197	44483	-	AK311426 NM_002618 TSC_hg19_v1_chr2_+_61244828	44935	+	TSC_hg19_v1_chr2_+_61244858 AK315244 AB022192 AF048755 BC067090 BC020547 BC040953 BC048804 BC035584 AB528913 CU688242 U71374	45040	+	BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##AK291729|PUS10|150962|pseudouridylate synthase 10##NM_002618|PEX13|5194|peroxisomal biogenesis factor 13##AK315244|PEX13|5194|peroxisomal biogenesis factor 13##AB022192|PEX13|5194|peroxisomal biogenesis factor 13##AF048755|PEX13|5194|peroxisomal biogenesis factor 13##BC067090|PEX13|5194|peroxisomal biogenesis factor 13##U71374|PEX13|5194|peroxisomal biogenesis factor 13	0.0	0.0	
chr3	119801137	119801210	reg1015069.p2	4.073	+	AY123976 TSC_hg19_v1_chr3_-_119582426	-218749	-	AF084644 NM_022002 AB528010 HQ692837 HQ709177	-299593	+	BC017304 TSC_hg19_v1_chr3_+_119500947	-300228	+	BC000251 AK290897 TSC_hg19_v1_chr3_-_119812684	11448	-	TSC_hg19_v1_chr3_-_119813270 BC012760 NM_001146156 NM_002093	11978	-	TSC_hg19_v1_chr3_+_119813618 BC035247	12497	+	AY123976|GSK3B|2932|glycogen synthase kinase 3 beta##AF084644|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##NM_022002|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##HQ692837|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##HQ709177|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##BC017304|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##BC000251|GSK3B|2932|glycogen synthase kinase 3 beta##AK290897|GSK3B|2932|glycogen synthase kinase 3 beta##BC012760|GSK3B|2932|glycogen synthase kinase 3 beta##NM_001146156|GSK3B|2932|glycogen synthase kinase 3 beta##NM_002093|GSK3B|2932|glycogen synthase kinase 3 beta	1.239704	0.0	denovo_WM_7:-58:0.249	denovo_WM_7:66:0.237	denovo_WM_7:67:0.237	denovo_WM_7:68:0.237	denovo_WM_7:69:0.237
chr1	168527248	168527369	reg1011498.p2	4.072	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-14091	-	AJ010277 NM_005149 BC093664 BC093666 EU446671	-277006	+	TSC_hg19_v1_chr1_+_168195262 BC068098 CU686619	-332015	+	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	18484	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	171121	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	548661	+	BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AJ010277|TBX19|9095|T-box 19##NM_005149|TBX19|9095|T-box 19##BC093664|TBX19|9095|T-box 19##BC093666|TBX19|9095|T-box 19##EU446671|TBX19|9095|T-box 19##BC068098|SFT2D2|375035|SFT2 domain containing 2##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide	0.0	0.0	
chr13	45062117	45062232	reg1011799.p1	4.072	+	NM_001243798	-13738	-	NM_001243797	-50785	-	NM_006022 TSC_hg19_v1_chr13_-_45011118	-51085	-	AK091854 AX747223 TSC_hg19_v1_chr13_-_45150467 BC136475 BC136482	88256	-	TSC_hg19_v1_chr13_-_45150604 AB082525 NM_001243799 NM_183422	88476	-	TSC_hg19_v1_chr13_-_45563607 AB528019 AF159548 BC001436 AK314242 NM_012345	501421	-	NM_001243798|TSC22D1|8848|TSC22 domain family, member 1##NM_001243797|TSC22D1|8848|TSC22 domain family, member 1##NM_006022|TSC22D1|8848|TSC22 domain family, member 1##AK091854|TSC22D1|8848|TSC22 domain family, member 1##BC136475|TSC22D1|8848|TSC22 domain family, member 1##BC136482|TSC22D1|8848|TSC22 domain family, member 1##AB082525|TSC22D1|8848|TSC22 domain family, member 1##NM_001243799|TSC22D1|8848|TSC22 domain family, member 1##NM_183422|TSC22D1|8848|TSC22 domain family, member 1##AF159548|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##BC001436|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##AK314242|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##NM_012345|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1	0.986894	0.0	denovo_WM_7:27:0.928
chr15	59271945	59272052	reg1014135.p1	4.072	+	TSC_hg19_v1_chr15_-_59225851 BC140851 NM_001013843 NM_024755	-46167	-	AK000867 TSC_hg19_v1_chr15_-_59225776 AK055195 BC108656 AK291423 AK131242	-46216	-	BC060514 TSC_hg19_v1_chr15_+_59063500 AK297291 AK075319 AB075509 BC140811 BC144616	-208476	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	7859	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	8281	+	TSC_hg19_v1_chr15_+_59359061 AK095327	87080	+	BC140851|SLTM|79811|SAFB-like, transcription modulator##NM_001013843|SLTM|79811|SAFB-like, transcription modulator##NM_024755|SLTM|79811|SAFB-like, transcription modulator##AK000867|SLTM|79811|SAFB-like, transcription modulator##AK055195|SLTM|79811|SAFB-like, transcription modulator##BC108656|SLTM|79811|SAFB-like, transcription modulator##AK291423|SLTM|79811|SAFB-like, transcription modulator##AK131242|SLTM|79811|SAFB-like, transcription modulator##BC060514|FAM63B|54629|family with sequence similarity 63, member B##AK297291|FAM63B|54629|family with sequence similarity 63, member B##AK075319|FAM63B|54629|family with sequence similarity 63, member B##AB075509|FAM63B|54629|family with sequence similarity 63, member B##BC140811|FAM63B|54629|family with sequence similarity 63, member B##BC144616|FAM63B|54629|family with sequence similarity 63, member B##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##AK095327|RNF111|54778|ring finger protein 111	0.806944	0.0	denovo_WM_7:104:0.793
chr2	85044639	85044769	reg1016724.p2	4.072	+	TSC_hg19_v1_chr2_+_84743576 AK094676 NM_001370	-301127	+	NM_003849	-358119	-	AK296741 TSC_hg19_v1_chr2_-_84686396	-358309	-	TSC_hg19_v1_chr2_-_85108209 AK296608 AK309615	63503	-	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	63599	-	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	88091	+	AK094676|DNAH6|1768|dynein, axonemal, heavy chain 6##NM_001370|DNAH6|1768|dynein, axonemal, heavy chain 6##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296608|C2orf89|129293|chromosome 2 open reading frame 89##AK309615|C2orf89|129293|chromosome 2 open reading frame 89##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10	0.615188	0.0	
chr4	85965162	85965283	reg1009301.p1	4.072	+	NM_014991	-77679	-	NM_001263 U65887	-461129	+	NM_006168	-545836	-	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	431121	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	734626	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	734676	+	NM_014991|WDFY3|23001|WD repeat and FYVE domain containing 3##NM_001263|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##U65887|CDS1|1040|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1##NM_006168|NKX6-1|4825|NK6 homeobox 1##NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24	0.0	0.0	
chr5	83556152	83556218	reg1013571.p2	4.072	+	AK313713 NM_001884 X17405 X78076 X78075	-539251	-	NM_001126336 NM_001164097 NM_001164098 NM_004385 TSC_hg19_v1_chr5_+_82767562 U16306 U26555 X15998 AK307642 AB209491 BC050524 D32039	-788568	+	NM_003401 NM_022406 NM_022550 TSC_hg19_v1_chr5_+_82373411 BC005259 AK290739 BC016314 U40622 AB017445	-1182802	+	U70313 AB529078 CU689034 CU691020 EU831927 EU831963 EU832022 EU832056 TSC_hg19_v1_chr5_-_83680238 AK312858 BX648583 BC053656 U70312	124061	-	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	124479	-	TSC_hg19_v1_chr5_+_85913757 AK026505	2357573	+	AK313713|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001884|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X17405|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##X78076|HAPLN1|1404|hyaluronan and proteoglycan link protein 1##NM_001126336|VCAN|1462|versican##NM_001164097|VCAN|1462|versican##NM_001164098|VCAN|1462|versican##NM_004385|VCAN|1462|versican##U16306|VCAN|1462|versican##U26555|VCAN|1462|versican##X15998|VCAN|1462|versican##AK307642|VCAN|1462|versican##AB209491|VCAN|1462|versican##BC050524|VCAN|1462|versican##D32039|VCAN|1462|versican##NM_003401|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022406|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##NM_022550|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC005259|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AK290739|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##BC016314|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U40622|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##AB017445|XRCC4|7518|X-ray repair complementing defective repair in Chinese hamster cells 4##U70313|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831927|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU831963|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832022|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##EU832056|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK312858|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BX648583|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC053656|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##U70312|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc	0.0	0.0	
chr6	25996534	25996638	reg1016505.p2	4.072	+	CR936707 TSC_hg19_v1_chr6_+_25963398	-33178	+	TSC_hg19_v1_chr6_+_25963029 BX640949 AK313248 BC026930 NM_006355 AB209906	-33553	+	U90544 NM_005835	-65695	-	CU686848 AB590705 EU446958 BC069492 TSC_hg19_v1_chr6_-_26018016 BC101593 BC112140 NM_005325	21413	-	TSC_hg19_v1_chr6_+_26020680 BC066245 BC066246 BC066247 BC067490 BC067491 BC069303 CR541858 NM_003529	24111	+	BC066248 BC066249 BC067495 BC069654 NM_003538	25320	+	CR936707|TRIM38|10475|tripartite motif containing 38##BX640949|TRIM38|10475|tripartite motif containing 38##AK313248|TRIM38|10475|tripartite motif containing 38##BC026930|TRIM38|10475|tripartite motif containing 38##NM_006355|TRIM38|10475|tripartite motif containing 38##AB209906|TRIM38|10475|tripartite motif containing 38##U90544|SLC17A2|10246|solute carrier family 17 (sodium phosphate), member 2##NM_005835|SLC17A2|10246|solute carrier family 17 (sodium phosphate), member 2##EU446958|HIST1H1A|3024|histone cluster 1, H1a##BC069492|HIST1H1A|3024|histone cluster 1, H1a##BC101593|HIST1H1A|3024|histone cluster 1, H1a##BC112140|HIST1H1A|3024|histone cluster 1, H1a##NM_005325|HIST1H1A|3024|histone cluster 1, H1a##BC066245|HIST1H3A|8350|histone cluster 1, H3a##BC066246|HIST1H3A|8350|histone cluster 1, H3a##BC066247|HIST1H3A|8350|histone cluster 1, H3a##BC067490|HIST1H3A|8350|histone cluster 1, H3a##BC067491|HIST1H3A|8350|histone cluster 1, H3a##BC069303|HIST1H3A|8350|histone cluster 1, H3a##CR541858|HIST1H3A|8350|histone cluster 1, H3a##NM_003529|HIST1H3A|8350|histone cluster 1, H3a##BC066248|HIST1H4A|8359|histone cluster 1, H4a##BC066249|HIST1H4A|8359|histone cluster 1, H4a##BC067495|HIST1H4A|8359|histone cluster 1, H4a##BC069654|HIST1H4A|8359|histone cluster 1, H4a##NM_003538|HIST1H4A|8359|histone cluster 1, H4a	0.0	0.0	
chr9	70496307	70496471	reg1011188.p2	4.072	+	TSC_hg19_v1_chr9_-_70490188 NM_001024916 NM_201453	-6213	-	BC141856 TSC_hg19_v1_chr9_-_70490153 BC067803 AK292585	-6239	-	AK293173 TSC_hg19_v1_chr9_-_70490138	-6249	-	NM_201453 AK293173 AY344633 AK297912 BC069006 BC082271 AF265442 CU688346	360503	+	AY344641 AY344642 NM_199135 BC137365 BC137366 EU446685 BC103887	421435	+	BC033073 NM_021965	475425	+	NM_001024916|CBWD5|220869|COBW domain containing 5##NM_201453|CBWD3|445571|COBW domain containing 3##BC141856|CBWD5|220869|COBW domain containing 5##BC067803|CBWD5|220869|COBW domain containing 5##AK292585|CBWD5|220869|COBW domain containing 5##AK293173|CBWD6|644019|COBW domain containing 6##NM_201453|CBWD3|445571|COBW domain containing 3##AK293173|CBWD6|644019|COBW domain containing 6##AY344633|CBWD3|445571|COBW domain containing 3##AK297912|CBWD3|445571|COBW domain containing 3##BC069006|CBWD6|644019|COBW domain containing 6##BC082271|CBWD5|220869|COBW domain containing 5##AF265442|CBWD5|220869|COBW domain containing 5##AY344641|FOXD4L3|286380|forkhead box D4-like 3##AY344642|FOXD4L3|286380|forkhead box D4-like 3##NM_199135|FOXD4L3|286380|forkhead box D4-like 3##BC137365|FOXD4L6|653404|forkhead box D4-like 6##BC137366|FOXD4L6|653404|forkhead box D4-like 6##EU446685|FOXD4L6|653404|forkhead box D4-like 6##BC103887|FOXD4L6|653404|forkhead box D4-like 6##BC033073|PGM5|5239|phosphoglucomutase 5##NM_021965|PGM5|5239|phosphoglucomutase 5	0.992317	0.0	denovo_WM_7:28:0.992
chr6	42757971	42758097	reg1009501.p2	4.071	+	TSC_hg19_v1_chr6_+_42751233 AK098234	-6793	+	TSC_hg19_v1_chr6_+_42750789 AK096036	-7373	+	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	-8337	+	AL833540 NM_015349 BC130302	30797	+	TSC_hg19_v1_chr6_+_42847388 BC064519 S81578 BC036861	89363	+	TSC_hg19_v1_chr6_+_42847644 AK291310 AK299816 AK021904 AK091341 AK291949 AK297324 BC058020 BC073890 NM_198486 CU687268 EU832458 EU832540	89618	+	AK098234|FLJ38717|401261|FLJ38717 protein##AK096036|FLJ38717|401261|FLJ38717 protein##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##AL833540|KIAA0240|23506|KIAA0240##NM_015349|KIAA0240|23506|KIAA0240##BC130302|KIAA0240|23506|KIAA0240##BC064519|RPL7L1|285855|ribosomal protein L7-like 1##BC036861|RPL7L1|285855|ribosomal protein L7-like 1##AK291310|RPL7L1|285855|ribosomal protein L7-like 1##AK299816|RPL7L1|285855|ribosomal protein L7-like 1##AK021904|RPL7L1|285855|ribosomal protein L7-like 1##AK291949|RPL7L1|285855|ribosomal protein L7-like 1##BC058020|RPL7L1|285855|ribosomal protein L7-like 1##BC073890|RPL7L1|285855|ribosomal protein L7-like 1##NM_198486|RPL7L1|285855|ribosomal protein L7-like 1##EU832458|RPL7L1|285855|ribosomal protein L7-like 1##EU832540|RPL7L1|285855|ribosomal protein L7-like 1	1.117168	0.0	denovo_WM_7:52:0.200
chr10	51621628	51621795	reg1015769.p2	4.070	+	AK292480 NM_001145262	-45427	+	NM_005437 AL162047 TSC_hg19_v1_chr10_+_51572443 BC012736	-49306	+	TSC_hg19_v1_chr10_+_51565230 BC001562 AK129911 AK302794 S71225 X77548	-56478	+	CU687598 CU688220 AK304883 AK223331 BC066951 NM_006327 TSC_hg19_v1_chr10_-_51623335 AF030162 AY442341 BC062707	1588	-	NM_001077665	126366	+	TSC_hg19_v1_chr10_+_51827685 BC150611 AK001686 NM_001005751 AK295129	205969	+	AK292480|NCOA4|8031|nuclear receptor coactivator 4##NM_001145262|NCOA4|8031|nuclear receptor coactivator 4##NM_005437|NCOA4|8031|nuclear receptor coactivator 4##AL162047|NCOA4|8031|nuclear receptor coactivator 4##BC012736|NCOA4|8031|nuclear receptor coactivator 4##BC001562|NCOA4|8031|nuclear receptor coactivator 4##AK129911|NCOA4|8031|nuclear receptor coactivator 4##AK302794|NCOA4|8031|nuclear receptor coactivator 4##X77548|NCOA4|8031|nuclear receptor coactivator 4##AK304883|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AK223331|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##BC066951|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##NM_006327|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AF030162|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##AY442341|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##BC062707|TIMM23|100287932|translocase of inner mitochondrial membrane 23 homolog (yeast)##NM_001077665|AGAP6|414189|ArfGAP with GTPase domain, ankyrin repeat and PH domain 6##BC150611|FAM21C|253725|family with sequence similarity 21, member C##AK001686|FAM21A|387680|family with sequence similarity 21, member A##NM_001005751|FAM21A|387680|family with sequence similarity 21, member A##AK295129|FAM21A|387680|family with sequence similarity 21, member A	0.996114	0.0	denovo_WM_7:-48:0.581
chr1	191122029	191122209	reg1016108.p1	4.070	+	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	-675384	-	NM_024420 TSC_hg19_v1_chr1_+_186798126 AK290336 M68874 M72393 AK302938 BC114340	-4324031	+	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	-4472629	-	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	1005484	+	AY643711 NM_001039152	1164002	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	1422789	+	AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_024420|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK290336|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M68874|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M72393|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK302938|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##BC114340|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1	0.148104	0.0	
chr1	220267108	220267197	reg1009223.p1	4.070	+	AJ249339 TSC_hg19_v1_chr1_-_220263167 AK315962 NM_006085	-3978	-	TSC_hg19_v1_chr1_-_220263112 AF125042 AK291943 BC017801 AK298476 AK300777	-4031	-	TSC_hg19_v1_chr1_-_220219923 BC046156 NM_004446	-47216	-	TSC_hg19_v1_chr1_+_220267461 AY267462 NM_018060 BC137438	300	+	TSC_hg19_v1_chr1_+_220267495 AY952883 D28500 AK291432 BC040376	454	+	AB020646 BC146760 TSC_hg19_v1_chr1_-_220445745 BC050630 AF004828 BC131573	178560	-	AJ249339|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK315962|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##NM_006085|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AF125042|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK291943|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC017801|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK298476|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##AK300777|BPNT1|10380|3'(2'), 5'-bisphosphate nucleotidase 1##BC046156|EPRS|2058|glutamyl-prolyl-tRNA synthetase##NM_004446|EPRS|2058|glutamyl-prolyl-tRNA synthetase##AY267462|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##NM_018060|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC137438|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AY952883|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##D28500|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AK291432|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##BC040376|IARS2|55699|isoleucyl-tRNA synthetase 2, mitochondrial##AB020646|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC146760|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC050630|AURKAPS1|6791|aurora kinase A pseudogene 1##AF004828|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)##BC131573|RAB3GAP2|25782|RAB3 GTPase activating protein subunit 2 (non-catalytic)	0.978134	0.0	
chr13	41226764	41226911	reg1005212.p2	4.070	+	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-996976	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-1049475	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	-1049510	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	13875	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	118455	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	118495	-	AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31	0.0	0.0	
chr14	68943293	68943409	reg1014373.p2	4.070	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-656831	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-660052	-	AK315462 NM_152443	-774749	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	316369	-	NM_001244698 NM_004926	317279	-	NM_001244701 AB528867	319633	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	0.0	0.0	
chr15	40850817	40850997	reg1004964.p2	4.070	+	NM_130468 AB066595 BC049214 TSC_hg19_v1_chr15_+_40763222 BC053633 AF282905 AK074739 CU690606 AF401222 AY358446 BC023653	-87565	+	TSC_hg19_v1_chr15_+_40733353 BC022782 NM_014952	-117544	+	TSC_hg19_v1_chr15_+_40698024 AK315296 BT007145 DQ892577 DQ895793	-152859	+	AK092214 AX747411 AL832032 AK098781 TSC_hg19_v1_chr15_-_40857211	6295	-	TSC_hg19_v1_chr15_-_40857235 AK312842 AK293079 NM_001080791 NM_001080792 NM_052849	6333	-	TSC_hg19_v1_chr15_+_40861497 AK301383	10591	+	NM_130468|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AB066595|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC049214|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC053633|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF282905|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AK074739|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF401222|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AY358446|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC023653|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC022782|BAHD1|22893|bromo adjacent homology domain containing 1##NM_014952|BAHD1|22893|bromo adjacent homology domain containing 1##AK315296|IVD|3712|isovaleryl-CoA dehydrogenase##BT007145|IVD|3712|isovaleryl-CoA dehydrogenase##DQ892577|IVD|3712|isovaleryl-CoA dehydrogenase##DQ895793|IVD|3712|isovaleryl-CoA dehydrogenase##AK092214|C15orf57|90416|chromosome 15 open reading frame 57##AL832032|C15orf57|90416|chromosome 15 open reading frame 57##AK098781|C15orf57|90416|chromosome 15 open reading frame 57##AK312842|C15orf57|90416|chromosome 15 open reading frame 57##AK293079|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080791|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080792|C15orf57|90416|chromosome 15 open reading frame 57##NM_052849|C15orf57|90416|chromosome 15 open reading frame 57##AK301383|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2	0.98747	0.0	denovo_WM_7:101:0.818
chr17	66454630	66454746	reg1002792.p1	4.070	+	AY691424 CU691786 TSC_hg19_v1_chr17_-_66453638 BC039867 AK301830 AK000917 NM_017983	-1077	-	AX750577 AX750581 U79745 AK313121 AK290417 BC064832 NM_001174166 NM_004694	-167358	-	TSC_hg19_v1_chr17_+_66255280 AY358380 NM_014960	-199354	+	TSC_hg19_v1_chr17_+_66508140 NM_212471 Y07642	53435	+	TSC_hg19_v1_chr17_+_66508161 BC093042	53478	+	TSC_hg19_v1_chr17_+_66508546 NM_002734 NM_212472	53847	+	AY691424|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##BC039867|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AK301830|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AK000917|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##NM_017983|WIPI1|55062|WD repeat domain, phosphoinositide interacting 1##AX750581|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##U79745|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AK313121|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AK290417|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##BC064832|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##NM_001174166|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##NM_004694|SLC16A6|9120|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)##AY358380|ARSG|22901|arylsulfatase G##NM_014960|ARSG|22901|arylsulfatase G##NM_212471|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##Y07642|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##BC093042|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##NM_002734|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)##NM_212472|PRKAR1A|5573|protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)	0.0	0.0	
chr17	8150876	8150956	reg1001401.p2	4.070	+	BC009751 AB011446 BC080581 AB011450 AF004022 AF015254 BC000442 NM_004217 TSC_hg19_v1_chr17_-_8113894 AK314889 AK297976 BC013300	-37033	-	TSC_hg19_v1_chr17_-_8093499 NM_017622	-57389	-	BC009261 AK000021 AK222506 TSC_hg19_v1_chr17_-_8093462 BC018880 BC070272	-57512	-	DQ451688 FJ790670 AL831955 TSC_hg19_v1_chr17_-_8151371 AK091077 AX746768 BC111783	446	-	TSC_hg19_v1_chr17_-_8151373 NM_025099	476	-	TSC_hg19_v1_chr17_+_8152624 AK292804 NM_012393 AK295895 AK292402 AB002359 BC146768 BC167158	1701	+	BC009751|AURKB|9212|aurora kinase B##AB011446|AURKB|9212|aurora kinase B##BC080581|AURKB|9212|aurora kinase B##AB011450|AURKB|9212|aurora kinase B##AF004022|AURKB|9212|aurora kinase B##AF015254|AURKB|9212|aurora kinase B##BC000442|AURKB|9212|aurora kinase B##NM_004217|AURKB|9212|aurora kinase B##AK314889|AURKB|9212|aurora kinase B##AK297976|AURKB|9212|aurora kinase B##BC013300|AURKB|9212|aurora kinase B##NM_017622|C17orf59|54785|chromosome 17 open reading frame 59##BC009261|C17orf59|54785|chromosome 17 open reading frame 59##AK000021|C17orf59|54785|chromosome 17 open reading frame 59##AK222506|C17orf59|54785|chromosome 17 open reading frame 59##BC018880|C17orf59|54785|chromosome 17 open reading frame 59##BC070272|C17orf59|54785|chromosome 17 open reading frame 59##DQ451688|CTC1|80169|CTS telomere maintenance complex component 1##FJ790670|CTC1|80169|CTS telomere maintenance complex component 1##AL831955|CTC1|80169|CTS telomere maintenance complex component 1##AK091077|CTC1|80169|CTS telomere maintenance complex component 1##BC111783|CTC1|80169|CTS telomere maintenance complex component 1##NM_025099|CTC1|80169|CTS telomere maintenance complex component 1##AK292804|PFAS|5198|phosphoribosylformylglycinamidine synthase##NM_012393|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK295895|PFAS|5198|phosphoribosylformylglycinamidine synthase##AK292402|PFAS|5198|phosphoribosylformylglycinamidine synthase##AB002359|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC146768|PFAS|5198|phosphoribosylformylglycinamidine synthase##BC167158|PFAS|5198|phosphoribosylformylglycinamidine synthase	0.0	0.0	
chr2	187728034	187728150	reg1015920.p2	4.070	+	AK128006 BC031094 NM_182521	-14196	-	TSC_hg19_v1_chr2_+_187558788 AK091423 AK289737 AX746973 BC060872 NM_177454 AF361495 CU687488	-169316	+	AK302990 NM_001144999	-263161	+	DQ280491 U17473 L76380 AK291630 AK292998 DQ280490 NM_005795	584854	-	J03225 AF021834 TSC_hg19_v1_chr2_-_188419163 AK313562 BC015514 BC014332	691018	-	TSC_hg19_v1_chr2_-_188419185 NM_001032281 NM_006287	691109	-	AK128006|ZSWIM2|151112|zinc finger, SWIM-type containing 2##BC031094|ZSWIM2|151112|zinc finger, SWIM-type containing 2##NM_182521|ZSWIM2|151112|zinc finger, SWIM-type containing 2##AK091423|FAM171B|165215|family with sequence similarity 171, member B##AK289737|FAM171B|165215|family with sequence similarity 171, member B##BC060872|FAM171B|165215|family with sequence similarity 171, member B##NM_177454|FAM171B|165215|family with sequence similarity 171, member B##AF361495|FAM171B|165215|family with sequence similarity 171, member B##AK302990|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##NM_001144999|ITGAV|3685|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)##DQ280491|CALCRL|10203|calcitonin receptor-like##U17473|CALCRL|10203|calcitonin receptor-like##L76380|CALCRL|10203|calcitonin receptor-like##AK291630|CALCRL|10203|calcitonin receptor-like##AK292998|CALCRL|10203|calcitonin receptor-like##NM_005795|CALCRL|10203|calcitonin receptor-like##J03225|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AF021834|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AK313562|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC015514|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC014332|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_001032281|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_006287|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)	1.27635	0.0	denovo_WM_7:2:0.838
chr11	32063605	32063699	reg1015298.p2	4.069	+	AB593092 AK314470 NM_001127612 TSC_hg19_v1_chr11_-_31839510	-224174	-	AB209177 TSC_hg19_v1_chr11_-_31832871 BX640762 NM_000280 NM_001604	-230783	-	BC011953 TSC_hg19_v1_chr11_-_31832790	-230865	-	TSC_hg19_v1_chr11_+_32112495 AK129791 NM_002901	48825	+	BC010120 TSC_hg19_v1_chr11_+_32112676 D42073 CU679627 DQ892928 DQ896177	49047	+	AK093168 BC032861 NM_001198551 NM_001198552	388708	-	AB593092|PAX6|5080|paired box 6##AK314470|PAX6|5080|paired box 6##NM_001127612|PAX6|5080|paired box 6##AB209177|PAX6|5080|paired box 6##BX640762|PAX6|5080|paired box 6##NM_000280|PAX6|5080|paired box 6##NM_001604|PAX6|5080|paired box 6##BC011953|PAX6|5080|paired box 6##AK129791|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##NM_002901|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##BC010120|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##D42073|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ892928|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##DQ896177|RCN1|5954|reticulocalbin 1, EF-hand calcium binding domain##AK093168|WT1|7490|Wilms tumor 1##BC032861|WT1|7490|Wilms tumor 1##NM_001198551|WT1|7490|Wilms tumor 1##NM_001198552|WT1|7490|Wilms tumor 1	0.997294	0.0	
chr19	1904791	1904971	reg1010210.p2	4.069	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-19377	-	TSC_hg19_v1_chr19_-_1885477 BC009256 BC033749	-19410	-	BC020512 TSC_hg19_v1_chr19_-_1885459 BC094816 BC071876 BC071644	-19436	-	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	471	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	524	+	TSC_hg19_v1_chr19_+_1941164 NM_001319	36282	+	AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##BC009256|FAM108A1|81926|family with sequence similarity 108, member A1##BC033749|FAM108A1|81926|family with sequence similarity 108, member A1##BC020512|FAM108A1|81926|family with sequence similarity 108, member A1##BC094816|FAM108A1|81926|family with sequence similarity 108, member A1##BC071876|FAM108A1|81926|family with sequence similarity 108, member A1##BC071644|FAM108A1|81926|family with sequence similarity 108, member A1##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2	0.991629	0.0	denovo_WM_7:16:0.331	denovo_WM_7:17:0.331	denovo_WM_7:18:0.331
chr2	225873287	225873434	reg1008959.p1	4.069	+	TSC_hg19_v1_chr2_-_225811768 EU236710	-61606	-	TSC_hg19_v1_chr2_-_225450116 NM_003590	-423240	-	TSC_hg19_v1_chr2_-_225450056 BC039598	-423285	-	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	33988	-	NM_020864 BC131727 AB040919	392285	+	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	1790119	-	EU236710|DOCK10|55619|dedicator of cytokinesis 10##NM_003590|CUL3|8452|cullin 3##BC039598|CUL3|8452|cullin 3##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1	0.0	0.0	
chr22	36191609	36191750	reg1016429.p1	4.069	+	AB528803 AY014878 NM_030642	-77762	+	TSC_hg19_v1_chr22_+_36044482 BC038950 AY358210	-147179	+	TSC_hg19_v1_chr22_+_36044432 AY014879 NM_030641 BC047864 AX775805 AL834420 AK095881	-147243	+	AB463238 AB649123 AY960684 CU013159 CU013447 CU692956 DQ891720 DQ894897 DQ894898 TSC_hg19_v1_chr22_-_36236318	44612	-	CR456559 TSC_hg19_v1_chr22_-_36236341	44661	-	TSC_hg19_v1_chr22_-_36236476 AF229058 AL009266 AK314632 BC013115 BC025281 AK291460 NM_001031695 NM_001082576 NM_001082577 NM_014309	44846	-	AY014878|APOL5|80831|apolipoprotein L, 5##NM_030642|APOL5|80831|apolipoprotein L, 5##BC038950|APOL6|80830|apolipoprotein L, 6##AY358210|APOL6|80830|apolipoprotein L, 6##AY014879|APOL6|80830|apolipoprotein L, 6##NM_030641|APOL6|80830|apolipoprotein L, 6##BC047864|APOL6|80830|apolipoprotein L, 6##AL834420|APOL6|80830|apolipoprotein L, 6##AK095881|APOL6|80830|apolipoprotein L, 6##AY960684|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##CU013159|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##CU013447|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##DQ891720|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##DQ894897|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##DQ894898|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##CR456559|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AF229058|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AL009266|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK314632|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC013115|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##BC025281|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##AK291460|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001031695|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082576|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_001082577|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2##NM_014309|RBFOX2|23543|RNA binding protein, fox-1 homolog (C. elegans) 2	1.76926	0.0	denovo_WM_7:0:0.577	denovo_WM_7:15:0.650
chr6	20992023	20992089	reg1019901.p1	4.069	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-457333	+	CR749285 NM_001243076	-588023	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-589953	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	602316	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	674603	+	BC015850 NM_000948	1305673	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.996729	0.0	denovo_WM_7:34:0.470	denovo_WM_7:35:0.527
chr7	114285775	114285841	reg1016495.p1	4.069	+	AF467253 NM_001172767 NM_148899 U80741 AF467258 AF467259 TSC_hg19_v1_chr7_+_114066703	-219178	+	TSC_hg19_v1_chr7_+_114055253 AF493430 AF337817 AF467257 BC126104 BC143866 BC143867	-230503	+	AK296957 TSC_hg19_v1_chr7_+_114055213	-230616	+	TSC_hg19_v1_chr7_+_114562148 AF054589 NM_001166345 NM_001166346 NM_199072	276366	+	BC040713 TSC_hg19_v1_chr7_+_114562979 AY196485	277148	+	AJ608795 NM_001244583	1322558	-	AF467253|FOXP2|93986|forkhead box P2##NM_001172767|FOXP2|93986|forkhead box P2##NM_148899|FOXP2|93986|forkhead box P2##AF467258|FOXP2|93986|forkhead box P2##AF467259|FOXP2|93986|forkhead box P2##AF493430|FOXP2|93986|forkhead box P2##AF337817|FOXP2|93986|forkhead box P2##AF467257|FOXP2|93986|forkhead box P2##BC126104|FOXP2|93986|forkhead box P2##BC143866|FOXP2|93986|forkhead box P2##BC143867|FOXP2|93986|forkhead box P2##AK296957|FOXP2|93986|forkhead box P2##AF054589|MDFIC|29969|MyoD family inhibitor domain containing##NM_001166345|MDFIC|29969|MyoD family inhibitor domain containing##NM_001166346|MDFIC|29969|MyoD family inhibitor domain containing##NM_199072|MDFIC|29969|MyoD family inhibitor domain containing##BC040713|MDFIC|29969|MyoD family inhibitor domain containing##AY196485|MDFIC|29969|MyoD family inhibitor domain containing##AJ608795|TFEC|22797|transcription factor EC##NM_001244583|TFEC|22797|transcription factor EC	0.0	0.0	
chr7	6280734	6280868	reg1010545.p2	4.069	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-136203	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-136258	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-181954	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	31430	-	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	107709	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	133426	+	AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.988557	0.0	denovo_WM_7:-40:0.361	denovo_WM_7:-41:0.628
chr1	165754680	165754776	reg1014196.p2	4.068	+	AK124964 BC009228 TSC_hg19_v1_chr1_+_165738255 BC071770	-16507	+	TSC_hg19_v1_chr1_-_165738106 AF070626 AB020980 AK298614 NM_019026	-16608	-	CU674038 AF274935 TSC_hg19_v1_chr1_-_165738097 BC000104 AY763589 AK316080 AY359027 AK316610	-16683	-	TSC_hg19_v1_chr1_+_165796794 NM_012474 BC002906	42043	+	AF236637 AK294537 TSC_hg19_v1_chr1_+_165797063 AB062451	42358	+	TSC_hg19_v1_chr1_-_166135951 NM_001017961	381226	-	AK124964|LOC100147773|100147773|uncharacterized LOC100147773##BC009228|LOC100147773|100147773|uncharacterized LOC100147773##BC071770|LOC100147773|100147773|uncharacterized LOC100147773##AF070626|TMCO1|54499|transmembrane and coiled-coil domains 1##AB020980|TMCO1|54499|transmembrane and coiled-coil domains 1##AK298614|TMCO1|54499|transmembrane and coiled-coil domains 1##NM_019026|TMCO1|54499|transmembrane and coiled-coil domains 1##AF274935|TMCO1|54499|transmembrane and coiled-coil domains 1##BC000104|TMCO1|54499|transmembrane and coiled-coil domains 1##AY763589|TMCO1|54499|transmembrane and coiled-coil domains 1##AK316080|TMCO1|54499|transmembrane and coiled-coil domains 1##AY359027|TMCO1|54499|transmembrane and coiled-coil domains 1##AK316610|TMCO1|54499|transmembrane and coiled-coil domains 1##NM_012474|UCK2|7371|uridine-cytidine kinase 2##BC002906|UCK2|7371|uridine-cytidine kinase 2##AF236637|UCK2|7371|uridine-cytidine kinase 2##AK294537|UCK2|7371|uridine-cytidine kinase 2##AB062451|UCK2|7371|uridine-cytidine kinase 2##NM_001017961|FAM78B|149297|family with sequence similarity 78, member B	2.68524	0.0	denovo_WM_7:-73:0.635	denovo_WM_7:90:0.575	denovo_WM_7:105:0.660
chr12	123259672	123259816	reg1015710.p2	4.068	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	-643	+	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	-22353	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	-44739	-	TSC_hg19_v1_chr12_+_123319294 AK090537	59558	+	TSC_hg19_v1_chr12_+_123320050 AK298387 BC067085 NM_003959 AB014555	60309	+	CU675175 TSC_hg19_v1_chr12_-_123380621	120871	-	NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK090537|HIP1R|9026|huntingtin interacting protein 1 related##AK298387|HIP1R|9026|huntingtin interacting protein 1 related##BC067085|HIP1R|9026|huntingtin interacting protein 1 related##NM_003959|HIP1R|9026|huntingtin interacting protein 1 related##AB014555|HIP1R|9026|huntingtin interacting protein 1 related	0.999601	0.0	
chr13	113514403	113514583	reg1003376.p2	4.068	+	TSC_hg19_v1_chr13_+_113344493 NM_015205 NM_032189	-169914	+	TSC_hg19_v1_chr13_-_113344130 AK057085	-170387	-	AK129953 NM_207440	-213136	+	TSC_hg19_v1_chr13_+_113622764 AB002360	108292	+	TSC_hg19_v1_chr13_+_113623680 AK315969 NM_001112732 AK295670	109102	+	TSC_hg19_v1_chr13_+_113633625 AK307867	119146	+	NM_015205|ATP11A|23250|ATPase, class VI, type 11A##NM_032189|ATP11A|23250|ATPase, class VI, type 11A##AK057085|LOC440149|440149|uncharacterized LOC440149##AK129953|C13orf35|400165|chromosome 13 open reading frame 35##NM_207440|C13orf35|400165|chromosome 13 open reading frame 35##AB002360|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK315969|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##NM_001112732|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK295670|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK307867|MCF2L|23263|MCF.2 cell line derived transforming sequence-like	0.0	0.0	
chr20	49126964	49127039	reg1010289.p2	4.068	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-69	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-82	+	TSC_hg19_v1_chr20_+_49126916 AK316563	-88	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	4	+	AK056792 NM_080829	126424	-	TSC_hg19_v1_chr20_-_49308074 AK124347	181076	-	BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C	0.0	0.0	
chr2	203164284	203164430	reg1000462.p1	4.068	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	-33785	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	-33901	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	-61089	-	TSC_hg19_v1_chr2_+_203241049 NM_001204	76689	+	TSC_hg19_v1_chr2_+_203499703 AK096090	335332	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	335502	+	BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)##AK096090|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B	0.0	0.0	
chr5	118040127	118040280	reg1010649.p1	4.068	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-2129689	-	TSC_hg19_v1_chr5_+_115898220 D28352	-2141979	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-2619482	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	284035	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	366608	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	366962	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.023405	0.0	
chr5	172124623	172124747	reg1013620.p2	4.068	+	AF275799 TSC_hg19_v1_chr5_-_172083715	-41042	-	TSC_hg19_v1_chr5_+_172068273 GQ414757 GQ414758 GQ414759 NM_001142651	-56432	+	TSC_hg19_v1_chr5_-_171881518 AK128871 NM_001017995	-243182	-	TSC_hg19_v1_chr5_-_172198199 X68277 AK300487 AK298047 AK298658 AK304475 AK316321 BC022463 NM_004417 AK299391	73526	-	TSC_hg19_v1_chr5_+_172261253 NM_001031711 AB033007 BC012766 BC014490 AB463606	136633	+	BC017360 NM_016093 AF083248 BC009766 BC070192 AK128872	261763	+	GQ414757|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414758|NEURL1B|54492|neuralized homolog 1B (Drosophila)##GQ414759|NEURL1B|54492|neuralized homolog 1B (Drosophila)##NM_001142651|NEURL1B|54492|neuralized homolog 1B (Drosophila)##AK128871|SH3PXD2B|285590|SH3 and PX domains 2B##NM_001017995|SH3PXD2B|285590|SH3 and PX domains 2B##X68277|DUSP1|1843|dual specificity phosphatase 1##AK300487|DUSP1|1843|dual specificity phosphatase 1##AK298047|DUSP1|1843|dual specificity phosphatase 1##AK298658|DUSP1|1843|dual specificity phosphatase 1##AK304475|DUSP1|1843|dual specificity phosphatase 1##AK316321|DUSP1|1843|dual specificity phosphatase 1##BC022463|DUSP1|1843|dual specificity phosphatase 1##NM_004417|DUSP1|1843|dual specificity phosphatase 1##AK299391|DUSP1|1843|dual specificity phosphatase 1##NM_001031711|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##AB033007|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC012766|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC014490|ERGIC1|57222|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1##BC017360|RPL26L1|51121|ribosomal protein L26-like 1##NM_016093|RPL26L1|51121|ribosomal protein L26-like 1##AF083248|RPL26L1|51121|ribosomal protein L26-like 1##BC009766|RPL26L1|51121|ribosomal protein L26-like 1##BC070192|RPL26L1|51121|ribosomal protein L26-like 1##AK128872|RPL26L1|51121|ribosomal protein L26-like 1	0.0	0.327751	CTCF.p2:9:0.328
chr7	137717055	137717217	reg1015939.p2	4.068	+	TSC_hg19_v1_chr7_-_137686833 NM_001253775 NM_194071	-30284	-	AK131517 TSC_hg19_v1_chr7_-_137686812	-30324	-	AK293048 BC110813 TSC_hg19_v1_chr7_-_137686800 BC063666 AJ549092 AJ549387	-30342	-	AK298421 NM_001190906 NM_001190907 NM_005989 Z28339 AK298428 BC130625 BC130627 AK289425 HQ258384	44082	+	TSC_hg19_v1_chr7_+_138145003 AK312610 AK075306 NM_003852 NM_015905 AK302679	427856	+	AF119042 BC028689 TSC_hg19_v1_chr7_+_138145183 AB528587 AF009353	428100	+	NM_001253775|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##NM_194071|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK131517|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK293048|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC110813|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##BC063666|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549092|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AJ549387|CREB3L2|64764|cAMP responsive element binding protein 3-like 2##AK298421|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190906|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_001190907|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##NM_005989|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##Z28339|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK298428|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130625|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##BC130627|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK289425|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##HQ258384|AKR1D1|6718|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)##AK312610|TRIM24|8805|tripartite motif containing 24##AK075306|TRIM24|8805|tripartite motif containing 24##NM_003852|TRIM24|8805|tripartite motif containing 24##NM_015905|TRIM24|8805|tripartite motif containing 24##AK302679|TRIM24|8805|tripartite motif containing 24##AF119042|TRIM24|8805|tripartite motif containing 24##BC028689|TRIM24|8805|tripartite motif containing 24##AF009353|TRIM24|8805|tripartite motif containing 24	0.960597	0.0	denovo_WM_7:-93:0.961
chr11	66812977	66813059	reg1017440.p1	4.067	+	NM_177963 AK289672 AK289727 BC037406	-22166	+	AK315810 NM_001177880	-22829	+	AK026328 NM_001136485	-70268	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	11268	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	11322	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	73721	+	NM_177963|SYT12|91683|synaptotagmin XII##AK289672|SYT12|91683|synaptotagmin XII##AK289727|SYT12|91683|synaptotagmin XII##BC037406|SYT12|91683|synaptotagmin XII##AK315810|SYT12|91683|synaptotagmin XII##NM_001177880|SYT12|91683|synaptotagmin XII##AK026328|C11orf86|254439|chromosome 11 open reading frame 86##NM_001136485|C11orf86|254439|chromosome 11 open reading frame 86##NM_014578|RHOD|29984|ras homolog gene family, member D##BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A	0.0	0.0	
chr12	101997992	101998166	reg1017579.p1	4.067	+	AK296681 NM_002465 NM_206819 NM_206820 NM_206821 AK056587 AK292976 AK295727 AK303401 BC015187 BC030980 BC065720 TSC_hg19_v1_chr12_+_101988748 BC092418 X66276 X73114 AL831993 AL832000 AL832332 AL832350 AL832354 AL832456 BC117217 BC143495 BC143502 BC143503 BC143504 AL834249 BX649073 AB385254 AM392734 EU831907 EU832001	-9283	+	TSC_hg19_v1_chr12_-_101801573 AK311793 AK302911 AK299062 BC007000 BX537387 NM_001177	-196536	-	TSC_hg19_v1_chr12_+_101673904 NM_014503 AK307934 AJ006778	-324174	+	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	93543	+	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	135140	-	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	226507	-	AK296681|MYBPC1|4604|myosin binding protein C, slow type##NM_002465|MYBPC1|4604|myosin binding protein C, slow type##NM_206819|MYBPC1|4604|myosin binding protein C, slow type##NM_206820|MYBPC1|4604|myosin binding protein C, slow type##NM_206821|MYBPC1|4604|myosin binding protein C, slow type##AK056587|MYBPC1|4604|myosin binding protein C, slow type##AK292976|MYBPC1|4604|myosin binding protein C, slow type##AK295727|MYBPC1|4604|myosin binding protein C, slow type##AK303401|MYBPC1|4604|myosin binding protein C, slow type##BC015187|MYBPC1|4604|myosin binding protein C, slow type##BC030980|MYBPC1|4604|myosin binding protein C, slow type##BC065720|MYBPC1|4604|myosin binding protein C, slow type##BC092418|MYBPC1|4604|myosin binding protein C, slow type##X66276|MYBPC1|4604|myosin binding protein C, slow type##X73114|MYBPC1|4604|myosin binding protein C, slow type##AL831993|MYBPC1|4604|myosin binding protein C, slow type##AL832000|MYBPC1|4604|myosin binding protein C, slow type##AL832332|MYBPC1|4604|myosin binding protein C, slow type##AL832350|MYBPC1|4604|myosin binding protein C, slow type##AL832354|MYBPC1|4604|myosin binding protein C, slow type##AL832456|MYBPC1|4604|myosin binding protein C, slow type##BC117217|MYBPC1|4604|myosin binding protein C, slow type##BC143495|MYBPC1|4604|myosin binding protein C, slow type##BC143502|MYBPC1|4604|myosin binding protein C, slow type##BC143503|MYBPC1|4604|myosin binding protein C, slow type##BC143504|MYBPC1|4604|myosin binding protein C, slow type##AL834249|MYBPC1|4604|myosin binding protein C, slow type##BX649073|MYBPC1|4604|myosin binding protein C, slow type##AM392734|MYBPC1|4604|myosin binding protein C, slow type##EU831907|MYBPC1|4604|myosin binding protein C, slow type##EU832001|MYBPC1|4604|myosin binding protein C, slow type##AK311793|ARL1|400|ADP-ribosylation factor-like 1##AK302911|ARL1|400|ADP-ribosylation factor-like 1##AK299062|ARL1|400|ADP-ribosylation factor-like 1##BC007000|ARL1|400|ADP-ribosylation factor-like 1##BX537387|ARL1|400|ADP-ribosylation factor-like 1##NM_001177|ARL1|400|ADP-ribosylation factor-like 1##NM_014503|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AK307934|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##AJ006778|UTP20|27340|UTP20, small subunit (SSU) processome component, homolog (yeast)##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	0.0	0.0	
chr19	11072606	11072748	reg1014452.p1	4.067	+	TSC_hg19_v1_chr19_+_11071823 NM_001128849 U29175 D26156	-853	+	TSC_hg19_v1_chr19_+_11071720 BC035916	-927	+	TSC_hg19_v1_chr19_+_11071717 BC007302	-962	+	BC136644 AB590582 BC151849 EU430756 EU430757 EU430758 EU430759 NM_001128845 NM_001128846 NM_001128847 NM_001128848 AB209313	22199	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	127400	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	127455	+	NM_001128849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##U29175|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##D26156|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC035916|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC007302|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC136644|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##BC151849|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430756|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430757|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430758|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##EU430759|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128845|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128846|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128847|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_001128848|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##AB209313|SMARCA4|6597|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor	0.995868	0.0	
chr2	102972184	102972344	reg1004138.p1	4.067	+	BC012580 BC030975 NM_003856 AK291578 AB029084	-18533	+	AB012701 NM_016232 AK313967 AK303389	-44273	+	AF284434 NM_003854 U49065 BC107064	-168816	+	BC069575 BC093975 BC093977 BC143403 BC143405 NM_003855 U43672 AB590640 AY192162	6844	+	AK300026 AF077346 NM_003853	62936	+	CR627411 NM_001011552	117497	+	BC012580|IL1RL1|9173|interleukin 1 receptor-like 1##BC030975|IL1RL1|9173|interleukin 1 receptor-like 1##NM_003856|IL1RL1|9173|interleukin 1 receptor-like 1##AK291578|IL1RL1|9173|interleukin 1 receptor-like 1##AB029084|IL1RL1|9173|interleukin 1 receptor-like 1##AB012701|IL1RL1|9173|interleukin 1 receptor-like 1##NM_016232|IL1RL1|9173|interleukin 1 receptor-like 1##AK313967|IL18R1|8809|interleukin 18 receptor 1##AK303389|IL1RL1|9173|interleukin 1 receptor-like 1##AF284434|IL1RL2|8808|interleukin 1 receptor-like 2##NM_003854|IL1RL2|8808|interleukin 1 receptor-like 2##U49065|IL1RL2|8808|interleukin 1 receptor-like 2##BC107064|IL1RL2|8808|interleukin 1 receptor-like 2##BC069575|IL18R1|8809|interleukin 18 receptor 1##BC093975|IL18R1|8809|interleukin 18 receptor 1##BC093977|IL18R1|8809|interleukin 18 receptor 1##BC143403|IL18R1|8809|interleukin 18 receptor 1##BC143405|IL18R1|8809|interleukin 18 receptor 1##NM_003855|IL18R1|8809|interleukin 18 receptor 1##U43672|IL18R1|8809|interleukin 18 receptor 1##AY192162|IL18R1|8809|interleukin 18 receptor 1##AK300026|IL18RAP|8807|interleukin 18 receptor accessory protein##AF077346|IL18RAP|8807|interleukin 18 receptor accessory protein##NM_003853|IL18RAP|8807|interleukin 18 receptor accessory protein##CR627411|SLC9A4|389015|solute carrier family 9 (sodium/hydrogen exchanger), member 4##NM_001011552|SLC9A4|389015|solute carrier family 9 (sodium/hydrogen exchanger), member 4	0.0	0.453766	CTCF.p2:-50:0.454
chr3	7604657	7604810	reg1013805.p1	4.067	+	TSC_hg19_v1_chr3_+_6902816 X94552 BC136458 BC136459	-701835	+	TSC_hg19_v1_chr3_+_6902801 AK312488 NM_000844 NM_181874	-701934	+	TSC_hg19_v1_chr3_+_5229490 AB383802 DQ892678 DQ895921 AK292643	-2375242	+	TSC_hg19_v1_chr3_-_8543333 AK124088 BC020876	938597	-	AK300803 TSC_hg19_v1_chr3_+_8543509 AK022176 NM_014583 AF169284 BC000646	938782	+	TSC_hg19_v1_chr3_+_8543540 AK294455 AK293849 AF216709 DQ891747 DQ894926	938848	+	X94552|GRM7|2917|glutamate receptor, metabotropic 7##BC136458|GRM7|2917|glutamate receptor, metabotropic 7##BC136459|GRM7|2917|glutamate receptor, metabotropic 7##AK312488|GRM7|2917|glutamate receptor, metabotropic 7##NM_000844|GRM7|2917|glutamate receptor, metabotropic 7##NM_181874|GRM7|2917|glutamate receptor, metabotropic 7##DQ892678|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##DQ895921|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK292643|EDEM1|9695|ER degradation enhancer, mannosidase alpha-like 1##AK124088|LOC100288428|100288428|uncharacterized LOC100288428##AK300803|LMCD1|29995|LIM and cysteine-rich domains 1##AK022176|LMCD1|29995|LIM and cysteine-rich domains 1##NM_014583|LMCD1|29995|LIM and cysteine-rich domains 1##AF169284|LMCD1|29995|LIM and cysteine-rich domains 1##BC000646|LMCD1|29995|LIM and cysteine-rich domains 1##AK294455|LMCD1|29995|LIM and cysteine-rich domains 1##AK293849|LMCD1|29995|LIM and cysteine-rich domains 1##AF216709|LMCD1|29995|LIM and cysteine-rich domains 1##DQ891747|LMCD1|29995|LIM and cysteine-rich domains 1##DQ894926|LMCD1|29995|LIM and cysteine-rich domains 1	0.0	0.0	
chr5	141386642	141386813	reg1007895.p2	4.067	+	TSC_hg19_v1_chr5_+_141348760 BX647955	-37973	+	TSC_hg19_v1_chr5_+_141348705 AK023698 AK023884 AK294262 NM_183401	-38024	+	TSC_hg19_v1_chr5_+_141348669 AK295965 AK057868 AB022663	-38062	+	D31766 TSC_hg19_v1_chr5_-_141392593 AK290686 AK022779 AK296452 BC020769 BC022322 NM_005471	5851	-	AK075495 TSC_hg19_v1_chr5_+_141488283	101524	+	TSC_hg19_v1_chr5_+_141488343 NM_030571 AK315481 AY192728	101621	+	BX647955|RNF14|9604|ring finger protein 14##AK023698|RNF14|9604|ring finger protein 14##AK023884|RNF14|9604|ring finger protein 14##AK294262|RNF14|9604|ring finger protein 14##NM_183401|RNF14|9604|ring finger protein 14##AK295965|RNF14|9604|ring finger protein 14##AK057868|RNF14|9604|ring finger protein 14##AB022663|RNF14|9604|ring finger protein 14##D31766|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK290686|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK022779|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK296452|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC020769|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC022322|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##NM_005471|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK075495|NDFIP1|80762|Nedd4 family interacting protein 1##NM_030571|NDFIP1|80762|Nedd4 family interacting protein 1##AK315481|NDFIP1|80762|Nedd4 family interacting protein 1##AY192728|NDFIP1|80762|Nedd4 family interacting protein 1	0.0	0.0	
chr6	17707128	17707252	reg1009898.p1	4.067	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	-288	-	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	-106591	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-313408	+	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	280570	-	TSC_hg19_v1_chr6_-_17987867 BC062673 NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113	280676	-	AY324850 BC103888 BC103889 BC103890 NM_198586	415660	-	Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A##BC062673|KIF13A|63971|kinesin family member 13A##NM_001105566|KIF13A|63971|kinesin family member 13A##NM_001105567|KIF13A|63971|kinesin family member 13A##NM_001105568|KIF13A|63971|kinesin family member 13A##NM_001243423|KIF13A|63971|kinesin family member 13A##NM_022113|KIF13A|63971|kinesin family member 13A##AY324850|NHLRC1|378884|NHL repeat containing 1##BC103888|NHLRC1|378884|NHL repeat containing 1##BC103889|NHLRC1|378884|NHL repeat containing 1##BC103890|NHLRC1|378884|NHL repeat containing 1##NM_198586|NHLRC1|378884|NHL repeat containing 1	0.0	0.0	
chr8	94816593	94816718	reg1012283.p2	4.067	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-49541	+	TSC_hg19_v1_chr8_-_94753214 NM_203390	-63428	-	BC039260 TSC_hg19_v1_chr8_-_94753192	-63464	-	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	112525	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	113380	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	404139	-	AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##NM_203390|RBM12B|389677|RNA binding motif protein 12B##BC039260|RBM12B|389677|RNA binding motif protein 12B##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)	1.925693	0.0	denovo_WM_7:-102:0.294	denovo_WM_7:-103:0.269	denovo_WM_7:-104:0.261
chrX	37646087	37646239	reg1014527.p1	4.067	+	TSC_hg19_v1_chrX_+_37639311 AK304033 AK301491 AK312929 AK301476 X04011 DQ890878 DQ894032	-6848	+	TSC_hg19_v1_chrX_+_37639284 NM_000397 AK289753 BC032720	-6893	+	AY534238 TSC_hg19_v1_chrX_+_37545043 BC036019 NM_021083 Z32684	-101093	+	CR450320 CR542213 TSC_hg19_v1_chrX_-_37706781 GQ129368 GQ129369	60613	-	BC000968 TSC_hg19_v1_chrX_-_37706825 AK311851 U02556 NM_006520	60689	-	AF049615 NM_012274 BC104428 BC104429 BC113024 BC113025	203917	+	AK304033|CYBB|1536|cytochrome b-245, beta polypeptide##AK301491|CYBB|1536|cytochrome b-245, beta polypeptide##AK312929|CYBB|1536|cytochrome b-245, beta polypeptide##AK301476|CYBB|1536|cytochrome b-245, beta polypeptide##X04011|CYBB|1536|cytochrome b-245, beta polypeptide##DQ890878|CYBB|1536|cytochrome b-245, beta polypeptide##DQ894032|CYBB|1536|cytochrome b-245, beta polypeptide##NM_000397|CYBB|1536|cytochrome b-245, beta polypeptide##AK289753|CYBB|1536|cytochrome b-245, beta polypeptide##BC032720|CYBB|1536|cytochrome b-245, beta polypeptide##AY534238|XK|7504|X-linked Kx blood group (McLeod syndrome)##BC036019|XK|7504|X-linked Kx blood group (McLeod syndrome)##NM_021083|XK|7504|X-linked Kx blood group (McLeod syndrome)##Z32684|XK|7504|X-linked Kx blood group (McLeod syndrome)##CR450320|DYNLT3|6990|dynein, light chain, Tctex-type 3##CR542213|DYNLT3|6990|dynein, light chain, Tctex-type 3##GQ129368|DYNLT3|6990|dynein, light chain, Tctex-type 3##GQ129369|DYNLT3|6990|dynein, light chain, Tctex-type 3##BC000968|DYNLT3|6990|dynein, light chain, Tctex-type 3##AK311851|DYNLT3|6990|dynein, light chain, Tctex-type 3##U02556|DYNLT3|6990|dynein, light chain, Tctex-type 3##NM_006520|DYNLT3|6990|dynein, light chain, Tctex-type 3##AF049615|CXorf27|25763|chromosome X open reading frame 27##NM_012274|CXorf27|25763|chromosome X open reading frame 27##BC104428|CXorf27|25763|chromosome X open reading frame 27##BC104429|CXorf27|25763|chromosome X open reading frame 27##BC113024|CXorf27|25763|chromosome X open reading frame 27##BC113025|CXorf27|25763|chromosome X open reading frame 27	0.455297	0.0	denovo_WM_7:0:0.292
chr1	174810968	174811090	reg1016305.p1	4.066	+	AB007940 NM_001243765	-41995	+	BC095532 NM_005684 CU688296 CU688298 BC067456 BC067457 BC067458 BC067459 BC067460 BC069460 HQ995526	-393799	+	AK095838 TSC_hg19_v1_chr1_+_174128676 AL157958	-682337	+	NM_001243763 AL049701	32530	+	NM_001035230 BC012094	33640	+	AK316355 NM_001243764 AK316219 AK298711	122892	+	AB007940|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243765|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC095532|GPR52|9293|G protein-coupled receptor 52##NM_005684|GPR52|9293|G protein-coupled receptor 52##BC067456|GPR52|9293|G protein-coupled receptor 52##BC067457|GPR52|9293|G protein-coupled receptor 52##BC067458|GPR52|9293|G protein-coupled receptor 52##BC067459|GPR52|9293|G protein-coupled receptor 52##BC067460|GPR52|9293|G protein-coupled receptor 52##BC069460|GPR52|9293|G protein-coupled receptor 52##HQ995526|GPR52|9293|G protein-coupled receptor 52##AK095838|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL157958|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like	0.987696	0.0	denovo_WM_7:-27:0.698
chr1	29504328	29504449	reg1014804.p1	4.066	+	BC064375 BC082989 NM_001003682	-53975	-	BC110336 NM_001171868	-55376	-	TSC_hg19_v1_chr1_-_29309157 D28453	-195263	-	AB527790 BT007415 CU678194 DQ893846 L14076 TSC_hg19_v1_chr1_-_29508334	3917	-	AK291509 BC002781 TSC_hg19_v1_chr1_-_29508360	3978	-	TSC_hg19_v1_chr1_-_29508396 AK310528 AK293706 AK223444	4010	-	BC064375|TMEM200B|399474|transmembrane protein 200B##BC082989|TMEM200B|399474|transmembrane protein 200B##NM_001003682|TMEM200B|399474|transmembrane protein 200B##BC110336|TMEM200B|399474|transmembrane protein 200B##NM_001171868|TMEM200B|399474|transmembrane protein 200B##BT007415|SRSF4|6429|serine/arginine-rich splicing factor 4##DQ893846|SRSF4|6429|serine/arginine-rich splicing factor 4##L14076|SRSF4|6429|serine/arginine-rich splicing factor 4##AK291509|SRSF4|6429|serine/arginine-rich splicing factor 4##BC002781|SRSF4|6429|serine/arginine-rich splicing factor 4##AK310528|SRSF4|6429|serine/arginine-rich splicing factor 4##AK293706|SRSF4|6429|serine/arginine-rich splicing factor 4##AK223444|SRSF4|6429|serine/arginine-rich splicing factor 4	0.99751	0.0	
chr15	42750076	42750176	reg1013897.p1	4.066	+	AL831983 BC029366 BC070244 AF205632 BC058023 BC111396 NM_022473 TSC_hg19_v1_chr15_-_42749731 AK294529 AK091929 AX747260	-389	-	BC107791 BC004883 NM_173089 NM_173090 BC067126 BC003521 BC100782 BC100783 BC100784 BC128605 BC007810	-53134	+	BC003169 NM_173088	-55539	+	TSC_hg19_v1_chr15_-_42783322 AK226132 BX649141 AK302735	33198	-	AK290152 AK315279 NM_003825 NM_130798	37354	+	U55936 TSC_hg19_v1_chr15_+_42787875 BC022890 BC003686 AK313161 BC000148 AJ011915	37741	+	AL831983|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC029366|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC070244|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AF205632|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC058023|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC111396|ZFP106|64397|zinc finger protein 106 homolog (mouse)##NM_022473|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK294529|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK091929|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BC107791|CAPN3|825|calpain 3, (p94)##BC004883|CAPN3|825|calpain 3, (p94)##NM_173089|CAPN3|825|calpain 3, (p94)##NM_173090|CAPN3|825|calpain 3, (p94)##BC067126|CAPN3|825|calpain 3, (p94)##BC003521|CAPN3|825|calpain 3, (p94)##BC100782|CAPN3|825|calpain 3, (p94)##BC100783|CAPN3|825|calpain 3, (p94)##BC100784|CAPN3|825|calpain 3, (p94)##BC128605|CAPN3|825|calpain 3, (p94)##BC007810|CAPN3|825|calpain 3, (p94)##BC003169|CAPN3|825|calpain 3, (p94)##NM_173088|CAPN3|825|calpain 3, (p94)##AK226132|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK302735|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK290152|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK315279|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_003825|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_130798|SNAP23|8773|synaptosomal-associated protein, 23kDa##U55936|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC022890|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC003686|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK313161|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC000148|SNAP23|8773|synaptosomal-associated protein, 23kDa##AJ011915|SNAP23|8773|synaptosomal-associated protein, 23kDa	0.786102	0.0	denovo_WM_7:-11:0.646
chr15	68230851	68231031	reg1011674.p2	4.066	+	NM_001031807	-113001	+	AK293459 NM_001206804	-389600	+	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	-395919	+	AF167160 NM_016166 BC118587 BC121797 TSC_hg19_v1_chr15_+_68346652 AK314515 BC104646	115671	+	TSC_hg19_v1_chr15_+_68346659 BC053685 AB590990 AF077951 EF487997 EF487998 FJ997900 AY826819	115720	+	TSC_hg19_v1_chr15_-_68497633 BX640702 BC009516 AK092628 AK296804 AX747637	266696	-	NM_001031807|SKOR1|390598|SKI family transcriptional corepressor 1##AK293459|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001206804|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5##AF167160|PIAS1|8554|protein inhibitor of activated STAT, 1##NM_016166|PIAS1|8554|protein inhibitor of activated STAT, 1##BC118587|PIAS1|8554|protein inhibitor of activated STAT, 1##BC121797|PIAS1|8554|protein inhibitor of activated STAT, 1##AK314515|PIAS1|8554|protein inhibitor of activated STAT, 1##BC104646|PIAS1|8554|protein inhibitor of activated STAT, 1##BC053685|PIAS1|8554|protein inhibitor of activated STAT, 1##AF077951|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487997|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487998|PIAS1|8554|protein inhibitor of activated STAT, 1##FJ997900|PIAS1|8554|protein inhibitor of activated STAT, 1##AY826819|PIAS1|8554|protein inhibitor of activated STAT, 1##BX640702|CALML4|91860|calmodulin-like 4##BC009516|CALML4|91860|calmodulin-like 4##AK092628|CALML4|91860|calmodulin-like 4##AK296804|CALML4|91860|calmodulin-like 4	0.998755	0.0	denovo_WM_7:33:0.801
chr3	98283480	98283660	reg1000906.p3	4.066	+	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	-32761	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-41704	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-41805	-	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	28849	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	167675	+	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	168017	+	AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.0	0.0	
chr11	45315755	45315935	reg1000144.p2	4.065	+	AK308841 AB384203 AM393283 BC093830 AK291009 BC093832 AL512743 AB037848 NM_001247987 NM_020826	-8095	-	AF275818 NM_020229	-200282	+	TSC_hg19_v1_chr11_-_44972435 AK292837 AK096176 AK056379 AK026607 AK054815 NM_001076787 NM_006034	-343428	-	TSC_hg19_v1_chr11_-_45687157 AK311168 BC022567 NM_003654	371339	-	NM_001145265 NM_001145266	509777	+	TSC_hg19_v1_chr11_+_45825944 AK225428 AK002182 AK091245	510069	+	AK308841|SYT13|57586|synaptotagmin XIII##AM393283|SYT13|57586|synaptotagmin XIII##BC093830|SYT13|57586|synaptotagmin XIII##AK291009|SYT13|57586|synaptotagmin XIII##BC093832|SYT13|57586|synaptotagmin XIII##AL512743|SYT13|57586|synaptotagmin XIII##AB037848|SYT13|57586|synaptotagmin XIII##NM_001247987|SYT13|57586|synaptotagmin XIII##NM_020826|SYT13|57586|synaptotagmin XIII##AF275818|PRDM11|56981|PR domain containing 11##NM_020229|PRDM11|56981|PR domain containing 11##AK292837|TP53I11|9537|tumor protein p53 inducible protein 11##AK096176|TP53I11|9537|tumor protein p53 inducible protein 11##AK056379|TP53I11|9537|tumor protein p53 inducible protein 11##AK026607|TP53I11|9537|tumor protein p53 inducible protein 11##AK054815|TP53I11|9537|tumor protein p53 inducible protein 11##NM_001076787|TP53I11|9537|tumor protein p53 inducible protein 11##NM_006034|TP53I11|9537|tumor protein p53 inducible protein 11##AK311168|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##BC022567|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_003654|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_001145265|SLC35C1|55343|solute carrier family 35, member C1##NM_001145266|SLC35C1|55343|solute carrier family 35, member C1##AK225428|SLC35C1|55343|solute carrier family 35, member C1##AK002182|SLC35C1|55343|solute carrier family 35, member C1##AK091245|SLC35C1|55343|solute carrier family 35, member C1	0.0	0.0	
chr1	179334934	179335104	reg1013848.p1	4.065	+	BX647935 NM_144696 AK302972	-155	+	TSC_hg19_v1_chr1_+_179262970 BC028940	-72031	+	AK026611 TSC_hg19_v1_chr1_+_179262936 AL833625	-72076	+	AJ279254 NM_014625 BC029141	210057	-	AK126889 NM_001199091 NM_001199085 NM_173533	225732	+	NM_001199089 AK127370 BC130532 BC144058	225987	+	BX647935|AXDND1|126859|axonemal dynein light chain domain containing 1##NM_144696|AXDND1|126859|axonemal dynein light chain domain containing 1##AK302972|AXDND1|126859|axonemal dynein light chain domain containing 1##BC028940|SOAT1|6646|sterol O-acyltransferase 1##AK026611|SOAT1|6646|sterol O-acyltransferase 1##AL833625|SOAT1|6646|sterol O-acyltransferase 1##AJ279254|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##NM_014625|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##BC029141|NPHS2|7827|nephrosis 2, idiopathic, steroid-resistant (podocin)##AK126889|TDRD5|163589|tudor domain containing 5##NM_001199091|TDRD5|163589|tudor domain containing 5##NM_001199085|TDRD5|163589|tudor domain containing 5##NM_173533|TDRD5|163589|tudor domain containing 5##NM_001199089|TDRD5|163589|tudor domain containing 5##AK127370|TDRD5|163589|tudor domain containing 5##BC130532|TDRD5|163589|tudor domain containing 5##BC144058|TDRD5|163589|tudor domain containing 5	0.0	0.0	
chr12	123210288	123210468	reg1015848.p1	4.065	+	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-9000	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-22506	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-198574	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	4627	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	27013	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	48723	+	AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62	0.564969	0.0	denovo_WM_7:106:0.448	denovo_WM_7:-107:0.450
chr14	61857376	61857512	reg1011002.p1	4.065	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-68917	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-108922	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-109250	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	304746	+	FJ790247 NM_001243084	306895	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	371675	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.015689	0.0	
chr18	67518332	67518420	reg1012215.p1	4.065	+	TSC_hg19_v1_chr18_+_67068214 NM_152721 AY599248 BC096744	-450146	+	NM_024781 CR749520	-1053034	+	NM_001093729 AK308114 AK091108	-1135857	+	AK313199 TSC_hg19_v1_chr18_-_67615110	96723	-	GU935335 GU935336 U56102 NM_006566	105819	-	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	354562	-	NM_152721|DOK6|220164|docking protein 6##AY599248|DOK6|220164|docking protein 6##BC096744|DOK6|220164|docking protein 6##NM_024781|CCDC102B|79839|coiled-coil domain containing 102B##CR749520|CCDC102B|79839|coiled-coil domain containing 102B##NM_001093729|CCDC102B|79839|coiled-coil domain containing 102B##AK308114|CCDC102B|79839|coiled-coil domain containing 102B##AK091108|CCDC102B|79839|coiled-coil domain containing 102B##AK313199|CD226|10666|CD226 molecule##GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin	2.84507	0.0	denovo_WM_7:55:0.881	denovo_WM_7:70:0.890	denovo_WM_7:-102:0.270	denovo_WM_7:-103:0.699
chr18	72168213	72168358	reg1014459.p1	4.065	+	TSC_hg19_v1_chr18_+_72167152 AF258592 BC003176 AJ347717 CU678422	-1169	+	NM_001168499	-1463	+	TSC_hg19_v1_chr18_+_72166580 AK097155	-1690	+	AK308716 TSC_hg19_v1_chr18_+_72201683 NM_032649 AY358756	33400	+	AK314572 AK098369 AK289916 TSC_hg19_v1_chr18_+_72201836 AK303708 BC110295 AJ417564 BC113512 BC117122 HQ258259	33565	+	TSC_hg19_v1_chr18_-_72264818 AK001853 BC132930 BC132956	96556	-	AF258592|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##BC003176|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AJ347717|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##NM_001168499|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK097155|CNDP2|55748|CNDP dipeptidase 2 (metallopeptidase M20 family)##AK308716|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##NM_032649|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AY358756|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AK314572|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AK098369|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AK289916|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AK303708|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##BC110295|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AJ417564|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##BC113512|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##BC117122|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##HQ258259|CNDP1|84735|carnosine dipeptidase 1 (metallopeptidase M20 family)##AK001853|LOC400657|400657|uncharacterized LOC400657##BC132930|LOC400657|400657|uncharacterized LOC400657##BC132956|LOC400657|400657|uncharacterized LOC400657	0.929018	0.0	denovo_WM_7:31:0.305
chr19	18486201	18486318	reg1009684.p1	4.065	+	TSC_hg19_v1_chr19_+_18451449 AK289968 NM_017712 AK294497 BC042138 BC028063 AJ278828 AK000215	-34852	+	TSC_hg19_v1_chr19_-_18433953 AF117235 NM_001252129 NM_012321	-52293	-	TSC_hg19_v1_chr19_-_18433887 AJ238096 AF251218 BC023665 AF182290 BC003652 BC022198 BC000387	-52372	-	TSC_hg19_v1_chr19_+_18496967 AB000584 AK225425 AK225431 AK291530 NM_004864 BC008962 U88323 BC000529 AF019770 U51731 BT019465	10723	+	BC025744 TSC_hg19_v1_chr19_-_18508433 NM_145256 BC053659 BC033825	22161	-	TSC_hg19_v1_chr19_+_18530163 NM_001009998 NM_032627	43868	+	AK289968|PGPEP1|54858|pyroglutamyl-peptidase I##NM_017712|PGPEP1|54858|pyroglutamyl-peptidase I##AK294497|PGPEP1|54858|pyroglutamyl-peptidase I##BC042138|PGPEP1|54858|pyroglutamyl-peptidase I##BC028063|PGPEP1|54858|pyroglutamyl-peptidase I##AJ278828|PGPEP1|54858|pyroglutamyl-peptidase I##AK000215|PGPEP1|54858|pyroglutamyl-peptidase I##AF117235|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001252129|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_012321|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238096|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF251218|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC023665|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182290|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC003652|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC022198|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000387|LSM4|25804|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AB000584|GDF15|9518|growth differentiation factor 15##AK225431|GDF15|9518|growth differentiation factor 15##AK291530|GDF15|9518|growth differentiation factor 15##NM_004864|GDF15|9518|growth differentiation factor 15##BC008962|GDF15|9518|growth differentiation factor 15##U88323|GDF15|9518|growth differentiation factor 15##BC000529|GDF15|9518|growth differentiation factor 15##AF019770|GDF15|9518|growth differentiation factor 15##U51731|GDF15|9518|growth differentiation factor 15##BT019465|GDF15|9518|growth differentiation factor 15##BC025744|LRRC25|126364|leucine rich repeat containing 25##NM_145256|LRRC25|126364|leucine rich repeat containing 25##BC053659|LRRC25|126364|leucine rich repeat containing 25##BC033825|LRRC25|126364|leucine rich repeat containing 25##NM_001009998|SSBP4|170463|single stranded DNA binding protein 4##NM_032627|SSBP4|170463|single stranded DNA binding protein 4	0.997829	0.0	
chr5	10607301	10607377	reg1007677.p1	4.065	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-42897	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-165187	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-165336	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	153920	-	TSC_hg19_v1_chr5_-_10761341 BC002726	154003	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	154060	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.0	0.0	
chr7	99767258	99767378	reg1014889.p2	4.065	+	TSC_hg19_v1_chr7_-_99766239 NM_024637	-1013	-	BC012976 TSC_hg19_v1_chr7_-_99766194 AF316113	-1115	-	TSC_hg19_v1_chr7_-_99756347 AK054872	-10970	-	AB587513 AM392909 CU693354 DQ893325 DQ896641 AL834418 TSC_hg19_v1_chr7_-_99774981 AB209144 AK096281 BC027972 NM_152742 AY093588	7609	-	AJ007798 TSC_hg19_v1_chr7_+_99775380	8046	+	TSC_hg19_v1_chr7_+_99775540 NM_012447 AK292394 BC146806 AK302693 BC047490 BC028684 AL833816 BC140932	8245	+	NM_024637|GAL3ST4|79690|galactose-3-O-sulfotransferase 4##BC012976|GAL3ST4|79690|galactose-3-O-sulfotransferase 4##AF316113|GAL3ST4|79690|galactose-3-O-sulfotransferase 4##AK054872|C7orf43|55262|chromosome 7 open reading frame 43##AM392909|GPC2|221914|glypican 2##DQ893325|GPC2|221914|glypican 2##DQ896641|GPC2|221914|glypican 2##AL834418|GPC2|221914|glypican 2##AK096281|GPC2|221914|glypican 2##BC027972|GPC2|221914|glypican 2##NM_152742|GPC2|221914|glypican 2##AY093588|GPC2|221914|glypican 2##AJ007798|STAG3|10734|stromal antigen 3##NM_012447|STAG3|10734|stromal antigen 3##AK292394|STAG3|10734|stromal antigen 3##BC146806|STAG3|10734|stromal antigen 3##AK302693|STAG3|10734|stromal antigen 3##BC047490|STAG3|10734|stromal antigen 3##BC028684|STAG3|10734|stromal antigen 3##AL833816|STAG3|10734|stromal antigen 3##BC140932|STAG3|10734|stromal antigen 3	0.0	0.0	
chr8	54985464	54985554	reg1013223.p1	4.065	+	TSC_hg19_v1_chr8_-_54934990 NM_006756 NM_201437	-50490	-	TSC_hg19_v1_chr8_-_54934851 M81601	-50655	-	BT019995 CR542221 AB464783 AK290454 TSC_hg19_v1_chr8_-_54934848 X62585 BC072460 X57198 AK026617 AK297957 BX538034 AK297729	-50742	-	TSC_hg19_v1_chr8_-_55014465 CR457103 CU679013 DQ891527 DQ894717 BC010397 AF077198 AF077199 AF291053 AK307277 AK313739 AF081281 AK298206 AK289400 BC008652 AF052112 NM_006330	28989	-	BC000891 NM_014175 TSC_hg19_v1_chr8_+_55047820 AF161494 AL136665 AK312832 AB528184 AM392964 CR533531	62302	+	AK025905 NM_022454 TSC_hg19_v1_chr8_+_55370494 BC030209 BC111770 BC111365	385007	+	NM_006756|TCEA1|6917|transcription elongation factor A (SII), 1##NM_201437|TCEA1|6917|transcription elongation factor A (SII), 1##M81601|TCEA1|6917|transcription elongation factor A (SII), 1##BT019995|TCEA1|6917|transcription elongation factor A (SII), 1##CR542221|TCEA1|6917|transcription elongation factor A (SII), 1##AK290454|TCEA1|6917|transcription elongation factor A (SII), 1##X62585|TCEA1|6917|transcription elongation factor A (SII), 1##BC072460|TCEA1|6917|transcription elongation factor A (SII), 1##X57198|TCEA1|6917|transcription elongation factor A (SII), 1##AK026617|TCEA1|6917|transcription elongation factor A (SII), 1##AK297957|TCEA1|6917|transcription elongation factor A (SII), 1##BX538034|TCEA1|6917|transcription elongation factor A (SII), 1##AK297729|TCEA1|6917|transcription elongation factor A (SII), 1##CR457103|LYPLA1|10434|lysophospholipase I##DQ891527|LYPLA1|10434|lysophospholipase I##DQ894717|LYPLA1|10434|lysophospholipase I##BC010397|LYPLA1|10434|lysophospholipase I##AF077198|LYPLA1|10434|lysophospholipase I##AF077199|LYPLA1|10434|lysophospholipase I##AF291053|LYPLA1|10434|lysophospholipase I##AK307277|LYPLA1|10434|lysophospholipase I##AK313739|LYPLA1|10434|lysophospholipase I##AF081281|LYPLA1|10434|lysophospholipase I##AK298206|LYPLA1|10434|lysophospholipase I##AK289400|LYPLA1|10434|lysophospholipase I##BC008652|LYPLA1|10434|lysophospholipase I##AF052112|LYPLA1|10434|lysophospholipase I##NM_006330|LYPLA1|10434|lysophospholipase I##BC000891|MRPL15|29088|mitochondrial ribosomal protein L15##NM_014175|MRPL15|29088|mitochondrial ribosomal protein L15##AF161494|MRPL15|29088|mitochondrial ribosomal protein L15##AL136665|MRPL15|29088|mitochondrial ribosomal protein L15##AK312832|MRPL15|29088|mitochondrial ribosomal protein L15##AM392964|MRPL15|29088|mitochondrial ribosomal protein L15##CR533531|MRPL15|29088|mitochondrial ribosomal protein L15##AK025905|SOX17|64321|SRY (sex determining region Y)-box 17##NM_022454|SOX17|64321|SRY (sex determining region Y)-box 17##BC030209|SOX17|64321|SRY (sex determining region Y)-box 17##BC111770|SOX17|64321|SRY (sex determining region Y)-box 17##BC111365|SOX17|64321|SRY (sex determining region Y)-box 17	0.990807	0.0	denovo_WM_7:-3:0.237	denovo_WM_7:-4:0.237	denovo_WM_7:-5:0.237	denovo_WM_7:-6:0.237
chr12	51633105	51633201	reg1012472.p2	4.064	+	TSC_hg19_v1_chr12_+_51632658 AB385271 CU677910 AK125855	-481	+	TSC_hg19_v1_chr12_+_51632650 D31767 BC002334 BC007900 AK095963	-518	+	TSC_hg19_v1_chr12_+_51632609 AK303828 AK290119 AK293330 AY430097 BX647278	-554	+	BC120965 BC120966 BC008712 TSC_hg19_v1_chr12_-_51663988 NM_001033873 BC001400 AK001839 NM_001031628	30932	-	TSC_hg19_v1_chr12_-_51717901 CU690454 AF146531	84715	-	TSC_hg19_v1_chr12_-_51717911 AK093638 AB032698 AK000783 AK225911 NM_016293	84768	-	AK125855|DAZAP2|9802|DAZ associated protein 2##D31767|DAZAP2|9802|DAZ associated protein 2##BC002334|DAZAP2|9802|DAZ associated protein 2##BC007900|DAZAP2|9802|DAZ associated protein 2##AK095963|DAZAP2|9802|DAZ associated protein 2##AK303828|DAZAP2|9802|DAZ associated protein 2##AK290119|DAZAP2|9802|DAZ associated protein 2##AK293330|DAZAP2|9802|DAZ associated protein 2##AY430097|DAZAP2|9802|DAZ associated protein 2##BX647278|DAZAP2|9802|DAZ associated protein 2##BC120965|SMAGP|57228|small cell adhesion glycoprotein##BC120966|SMAGP|57228|small cell adhesion glycoprotein##BC008712|SMAGP|57228|small cell adhesion glycoprotein##NM_001033873|SMAGP|57228|small cell adhesion glycoprotein##BC001400|SMAGP|57228|small cell adhesion glycoprotein##AK001839|SMAGP|57228|small cell adhesion glycoprotein##NM_001031628|SMAGP|57228|small cell adhesion glycoprotein##AF146531|BIN2|51411|bridging integrator 2##AK093638|BIN2|51411|bridging integrator 2##AB032698|BIN2|51411|bridging integrator 2##AK000783|BIN2|51411|bridging integrator 2##AK225911|BIN2|51411|bridging integrator 2##NM_016293|BIN2|51411|bridging integrator 2	0.0	0.0	
chr15	70961737	70961846	reg1013081.p1	4.064	+	TSC_hg19_v1_chr15_-_70878946 BC040579	-82847	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	-571548	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	-571564	-	BC016881 AL834243 NM_001008224 AK055435	32836	-	AB046781 BC113407 BC113409 BC143266 BC143267 TSC_hg19_v1_chr15_-_71055898 AF322916 NM_018003	94051	-	CU675231 BC006082 BC009446 BC014018 AL833876 BC039153 TSC_hg19_v1_chr15_-_71146496 AK130092 AF443828 AF443829 AK002058 NM_018357 NM_197958	184677	-	BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC016881|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AL834243|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_001008224|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AK055435|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AB046781|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113407|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC113409|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143266|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC143267|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##AF322916|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##NM_018003|UACA|55075|uveal autoantigen with coiled-coil domains and ankyrin repeats##BC006082|LARP6|55323|La ribonucleoprotein domain family, member 6##BC009446|LARP6|55323|La ribonucleoprotein domain family, member 6##BC014018|LARP6|55323|La ribonucleoprotein domain family, member 6##AL833876|LARP6|55323|La ribonucleoprotein domain family, member 6##BC039153|LARP6|55323|La ribonucleoprotein domain family, member 6##AK130092|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443828|LARP6|55323|La ribonucleoprotein domain family, member 6##AF443829|LARP6|55323|La ribonucleoprotein domain family, member 6##AK002058|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_018357|LARP6|55323|La ribonucleoprotein domain family, member 6##NM_197958|LARP6|55323|La ribonucleoprotein domain family, member 6	0.99416	0.0	denovo_WM_7:20:0.584	denovo_WM_7:22:0.340
chr16	19098028	19098094	reg1014752.p1	4.064	+	TSC_hg19_v1_chr16_+_19079232 AL136647 NM_001190983 BC043272	-18796	+	AF098948 TSC_hg19_v1_chr16_+_19078967 AK225115 AB528110 AM393051 AM393521	-19089	+	AK315470 NM_016138 TSC_hg19_v1_chr16_+_19078935 BC003185 AK024291	-19131	+	TSC_hg19_v1_chr16_+_19125253 AK096327 NM_001034841	27187	+	TSC_hg19_v1_chr16_+_19179561 NM_016524 BC004518 AF220560 AB527504 CU678742	81690	+	BC070101 NM_001105248 NM_001105249	323995	+	AL136647|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_001190983|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC043272|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AF098948|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK225115|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AM393051|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AM393521|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK315470|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##NM_016138|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##BC003185|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK024291|COQ7|10229|coenzyme Q7 homolog, ubiquinone (yeast)##AK096327|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##NM_001034841|ITPRIPL2|162073|inositol 1,4,5-trisphosphate receptor interacting protein-like 2##NM_016524|SYT17|51760|synaptotagmin XVII##BC004518|SYT17|51760|synaptotagmin XVII##AF220560|SYT17|51760|synaptotagmin XVII##BC070101|TMC5|79838|transmembrane channel-like 5##NM_001105248|TMC5|79838|transmembrane channel-like 5##NM_001105249|TMC5|79838|transmembrane channel-like 5	0.0	0.0	
chr2	197024966	197025105	reg1015285.p1	4.064	+	AB463018 AF327442 AK094515 NM_018897 AB023161	-91540	-	NM_020342 TSC_hg19_v1_chr2_+_196521958 AK294771 AB033091 AK291241 BC101516 BC112223 BC010371 AL050294	-503127	+	BC029413 NM_001127257 CR749813	-503460	+	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	11244	-	TSC_hg19_v1_chr2_-_197036310 NM_004226	11283	-	BC117194 BC117198 AB037722 NM_020760	432257	-	AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_020342|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK294771|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AB033091|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AK291241|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC101516|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC112223|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC010371|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##AL050294|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC029413|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##NM_001127257|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##CR749813|SLC39A10|57181|solute carrier family 39 (zinc transporter), member 10##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##NM_004226|STK17B|9262|serine/threonine kinase 17b##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	0.0	0.0	
chr3	151986249	151986421	reg1002202.p1	4.064	+	NM_021038 NM_207292	-507	+	TSC_hg19_v1_chr3_+_151591430 AK290420 NM_033050 BC030948 AF247785	-394882	+	NM_001086 L32179 BC020706 AK290628 BC032309 CU689322	-454431	+	TSC_hg19_v1_chr3_+_151986753 BC050535 BC043493	407	+	TSC_hg19_v1_chr3_-_151987332 AK304857 AK316515	1010	-	NM_207293 NM_207294 NM_207295 NM_207296 NM_207297	30858	+	NM_021038|MBNL1|4154|muscleblind-like (Drosophila)##NM_207292|MBNL1|4154|muscleblind-like (Drosophila)##AK290420|SUCNR1|56670|succinate receptor 1##NM_033050|SUCNR1|56670|succinate receptor 1##BC030948|SUCNR1|56670|succinate receptor 1##AF247785|SUCNR1|56670|succinate receptor 1##NM_001086|AADAC|13|arylacetamide deacetylase (esterase)##L32179|AADAC|13|arylacetamide deacetylase (esterase)##BC020706|AADAC|13|arylacetamide deacetylase (esterase)##AK290628|AADAC|13|arylacetamide deacetylase (esterase)##BC032309|AADAC|13|arylacetamide deacetylase (esterase)##BC050535|MBNL1|4154|muscleblind-like (Drosophila)##BC043493|MBNL1|4154|muscleblind-like (Drosophila)##AK304857|LOC401093|401093|uncharacterized LOC401093##AK316515|LOC401093|401093|uncharacterized LOC401093##NM_207293|MBNL1|4154|muscleblind-like (Drosophila)##NM_207294|MBNL1|4154|muscleblind-like (Drosophila)##NM_207295|MBNL1|4154|muscleblind-like (Drosophila)##NM_207296|MBNL1|4154|muscleblind-like (Drosophila)##NM_207297|MBNL1|4154|muscleblind-like (Drosophila)	0.0	0.0	
chr5	140961616	140961704	reg1011092.p1	4.064	+	AL050086 TSC_hg19_v1_chr5_-_140895550	-66178	-	TSC_hg19_v1_chr5_+_140868721 BC112081 BC112083 AF152339 AF152526 NM_018929 NM_032407	-92896	+	TSC_hg19_v1_chr5_+_140864626 BC042650 AF152338 AF152525 BC101035 BC101037 BC101038 NM_018928 NM_032406 BC101036	-96976	+	AF051782 AY363395 AB384958 DQ067453 TSC_hg19_v1_chr5_-_140998497 BC117257 BC143413 BC143414	36838	-	TSC_hg19_v1_chr5_-_140998562 AB209482	36901	-	TSC_hg19_v1_chr5_-_140998564 AK304291	36904	-	AL050086|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##BC112081|PCDHGC5|56097|protocadherin gamma subfamily C, 5##BC112083|PCDHGC5|56097|protocadherin gamma subfamily C, 5##AF152339|PCDHGC5|56097|protocadherin gamma subfamily C, 5##AF152526|PCDHGC5|56097|protocadherin gamma subfamily C, 5##NM_018929|PCDHGC5|56097|protocadherin gamma subfamily C, 5##NM_032407|PCDHGC5|56097|protocadherin gamma subfamily C, 5##BC042650|PCDHGC4|56098|protocadherin gamma subfamily C, 4##AF152338|PCDHGC4|56098|protocadherin gamma subfamily C, 4##AF152525|PCDHGC4|56098|protocadherin gamma subfamily C, 4##BC101035|PCDHGC4|56098|protocadherin gamma subfamily C, 4##BC101038|PCDHGC4|56098|protocadherin gamma subfamily C, 4##NM_018928|PCDHGC4|56098|protocadherin gamma subfamily C, 4##NM_032406|PCDHGC4|56098|protocadherin gamma subfamily C, 4##BC101036|PCDHGC4|56098|protocadherin gamma subfamily C, 4##AF051782|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##AY363395|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##DQ067453|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##BC117257|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##BC143413|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##BC143414|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##AB209482|DIAPH1|1729|diaphanous homolog 1 (Drosophila)##AK304291|DIAPH1|1729|diaphanous homolog 1 (Drosophila)	1.969645	0.0	denovo_WM_7:-10:0.943	denovo_WM_7:-25:0.954
chr5	55274022	55274130	reg1008290.p2	4.064	+	NM_001242636 NM_001242639	-124927	+	AY358740 NM_001242637 NM_001242638 NM_139017 AK297938 AY499342 AY499339 AY499340 AY499341	-126807	+	NM_001166534 AK093439 AX748127	-211351	+	TSC_hg19_v1_chr5_-_55290783 BC071555 M57230 NM_001190981 NM_002184 NM_175767	16687	-	AK123389 NM_024669	255109	-	NM_005921	836823	+	NM_001242636|IL31RA|133396|interleukin 31 receptor A##NM_001242639|IL31RA|133396|interleukin 31 receptor A##AY358740|IL31RA|133396|interleukin 31 receptor A##NM_001242637|IL31RA|133396|interleukin 31 receptor A##NM_001242638|IL31RA|133396|interleukin 31 receptor A##NM_139017|IL31RA|133396|interleukin 31 receptor A##AK297938|IL31RA|133396|interleukin 31 receptor A##AY499342|IL31RA|133396|interleukin 31 receptor A##AY499339|IL31RA|133396|interleukin 31 receptor A##AY499340|IL31RA|133396|interleukin 31 receptor A##AY499341|IL31RA|133396|interleukin 31 receptor A##NM_001166534|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##AK093439|DDX4|54514|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4##BC071555|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##M57230|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_001190981|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_002184|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##NM_175767|IL6ST|3572|interleukin 6 signal transducer (gp130, oncostatin M receptor)##AK123389|ANKRD55|79722|ankyrin repeat domain 55##NM_024669|ANKRD55|79722|ankyrin repeat domain 55##NM_005921|MAP3K1|4214|mitogen-activated protein kinase kinase kinase 1	0.0	0.016996	
chr6	151186267	151186420	reg1011356.p1	4.064	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-265323	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-496185	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-722102	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	489	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	578	+	TSC_hg19_v1_chr6_+_151187064 AL117452	758	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.999851	0.0	
chr7	6765489	6765669	reg1003862.p3	4.064	+	AK092111 TSC_hg19_v1_chr7_+_6746715	-18870	+	TSC_hg19_v1_chr7_-_6746579 BC051892 BC154414 AB021643 NM_006956 NM_016265 AK293925	-18999	-	NM_017560	-110053	+	TSC_hg19_v1_chr7_+_6769414 AK296451	3836	+	AK314983 BC034495 NM_001099697 NM_173565	28160	+	AK296026 CU679629 AK000993 TSC_hg19_v1_chr7_-_6865849	100259	-	BC051892|ZNF12|7559|zinc finger protein 12##BC154414|ZNF12|7559|zinc finger protein 12##AB021643|ZNF12|7559|zinc finger protein 12##NM_006956|ZNF12|7559|zinc finger protein 12##NM_016265|ZNF12|7559|zinc finger protein 12##AK293925|ZNF12|7559|zinc finger protein 12##NM_017560|ZNF853|54753|zinc finger protein 853##AK314983|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##BC034495|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##NM_001099697|RSPH10B2|728194|radial spoke head 10 homolog B2 (Chlamydomonas)##NM_173565|RSPH10B|222967|radial spoke head 10 homolog B (Chlamydomonas)##AK296026|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##AK000993|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)	0.997734	0.0	
chr10	111834225	111834368	reg1014860.p1	4.063	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-66329	+	TSC_hg19_v1_chr10_+_111767741 BX647403 NM_001121 NM_016824 BC062559 BX648016	-66567	+	NM_019903 AB209810 BC057285	-68515	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	133063	+	BC012907 NM_001008541	135692	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	151525	+	AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##BX647403|ADD3|120|adducin 3 (gamma)##NM_001121|ADD3|120|adducin 3 (gamma)##NM_016824|ADD3|120|adducin 3 (gamma)##BC062559|ADD3|120|adducin 3 (gamma)##BX648016|ADD3|120|adducin 3 (gamma)##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1	0.986189	0.0	denovo_WM_7:43:0.768
chr11	125756777	125756887	reg1014477.p1	4.063	+	AK057477 NM_145014	-3324	+	AK123042 AK309978 AK311509 NM_001144874	-53622	+	EF426753 NM_001129883 EU703625	-98807	+	AK127394 NM_001134793	122	+	TSC_hg19_v1_chr11_+_125757594 BC015047	781	+	TSC_hg19_v1_chr11_-_125773094 AK055702 BC004822 AK314251 NM_031307	16279	-	AK057477|HYLS1|219844|hydrolethalus syndrome 1##NM_145014|HYLS1|219844|hydrolethalus syndrome 1##AK123042|PATE4|399968|prostate and testis expressed 4##AK311509|PATE4|399968|prostate and testis expressed 4##NM_001144874|PATE4|399968|prostate and testis expressed 4##EF426753|PATE3|100169851|prostate and testis expressed 3##NM_001129883|PATE3|100169851|prostate and testis expressed 3##EU703625|PATE3|100169851|prostate and testis expressed 3##AK127394|HYLS1|219844|hydrolethalus syndrome 1##NM_001134793|HYLS1|219844|hydrolethalus syndrome 1##BC015047|HYLS1|219844|hydrolethalus syndrome 1##AK055702|PUS3|83480|pseudouridylate synthase 3##BC004822|PUS3|83480|pseudouridylate synthase 3##AK314251|PUS3|83480|pseudouridylate synthase 3##NM_031307|PUS3|83480|pseudouridylate synthase 3	0.999414	0.0	
chr1	117099240	117099395	reg1014478.p1	4.063	+	TSC_hg19_v1_chr1_-_116961216 AK309389	-138079	-	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	-138127	-	AK296362 NM_001160234	-173326	+	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	14298	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	14360	-	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	111066	-	AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3	0.025902	0.0	
chr12	110969837	110969918	reg1012512.p2	4.063	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-29802	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-29967	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-63208	+	TSC_hg19_v1_chr12_-_111020755 AY357944	50916	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	51193	-	AK124744 TSC_hg19_v1_chr12_-_111021124	51249	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	0.0	0.0	
chr16	89941795	89941886	reg1013940.p3	4.063	+	TSC_hg19_v1_chr16_+_89940021 BC011884 AK024679 BC009349 BC000959 AB528245 AB587412 CU674474 CU679309 EU446609	-1794	+	TSC_hg19_v1_chr16_+_89940003 NM_014972 AK301053	-1837	+	TSC_hg19_v1_chr16_+_89894882 BC111030 NM_032451 AJ422077 BC011119	-46935	+	AK024232 NM_002386	42446	+	TSC_hg19_v1_chr16_+_89985278 AK225902 AK054666 BC007856	43437	+	AK292219 NM_001197181	46576	+	BC011884|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##AK024679|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##BC009349|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##BC000959|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##EU446609|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##NM_014972|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##AK301053|TCF25|22980|transcription factor 25 (basic helix-loop-helix)##BC111030|SPIRE2|84501|spire homolog 2 (Drosophila)##NM_032451|SPIRE2|84501|spire homolog 2 (Drosophila)##AJ422077|SPIRE2|84501|spire homolog 2 (Drosophila)##BC011119|SPIRE2|84501|spire homolog 2 (Drosophila)##AK024232|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##NM_002386|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##AK225902|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##AK054666|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##BC007856|MC1R|4157|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)##AK292219|TUBB3|10381|tubulin, beta 3 class III##NM_001197181|TUBB3|10381|tubulin, beta 3 class III	1.016945	0.0	
chr17	79850789	79850934	reg1010655.p2	4.063	+	TSC_hg19_v1_chr17_+_79849827 BC066308 NM_001002249	-1001	+	TSC_hg19_v1_chr17_+_79849631 AF151048 BC000607 BC095454 AF247789 BC171892 BC171898 BC171899 BC171900 BC104641	-1222	+	AK307214 TSC_hg19_v1_chr17_+_79849610 NM_001002244 NM_001002245 NM_001002246 NM_001002247 NM_001002248 NM_016476	-1258	+	BC126128 BC126485 BC146875 BC146890 NM_148896 AF525737 AB085942	9251	+	TSC_hg19_v1_chr17_-_79869052 AK297996 AK093328	18208	-	TSC_hg19_v1_chr17_-_79869276 AK301723 CR456779 CU674172 AY251539 BC000351 AK315777 D84307 BC010075 NM_001184917 NM_002861	18424	-	BC066308|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002249|ANAPC11|51529|anaphase promoting complex subunit 11##AF151048|ANAPC11|51529|anaphase promoting complex subunit 11##BC000607|ANAPC11|51529|anaphase promoting complex subunit 11##BC095454|ANAPC11|51529|anaphase promoting complex subunit 11##AF247789|ANAPC11|51529|anaphase promoting complex subunit 11##BC171892|ANAPC11|51529|anaphase promoting complex subunit 11##BC171898|ANAPC11|51529|anaphase promoting complex subunit 11##BC171899|ANAPC11|51529|anaphase promoting complex subunit 11##BC171900|ANAPC11|51529|anaphase promoting complex subunit 11##BC104641|ANAPC11|51529|anaphase promoting complex subunit 11##AK307214|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002244|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002245|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002246|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002247|ANAPC11|51529|anaphase promoting complex subunit 11##NM_001002248|ANAPC11|51529|anaphase promoting complex subunit 11##NM_016476|ANAPC11|51529|anaphase promoting complex subunit 11##BC126128|NPB|256933|neuropeptide B##BC126485|NPB|256933|neuropeptide B##BC146875|NPB|256933|neuropeptide B##BC146890|NPB|256933|neuropeptide B##NM_148896|NPB|256933|neuropeptide B##AF525737|NPB|256933|neuropeptide B##AB085942|NPB|256933|neuropeptide B##AK297996|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AK093328|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AK301723|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##CR456779|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AY251539|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##BC000351|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##AK315777|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##D84307|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##BC010075|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##NM_001184917|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine##NM_002861|PCYT2|5833|phosphate cytidylyltransferase 2, ethanolamine	0.998499	0.0	denovo_WM_7:34:0.457	denovo_WM_7:35:0.457
chr21	42897845	42897970	reg1010555.p1	4.063	+	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-17824	-	TSC_hg19_v1_chr21_-_42880078 AF329454 EU090249 HM245389 HM245390	-17830	-	AK291813 TSC_hg19_v1_chr21_-_42880030 AK296860 NM_001135099 BC051839 AF270487 BC035623	-17920	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	289315	-	AK027424 TSC_hg19_v1_chr21_-_43187270	289360	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	401591	-	BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AF329454|TMPRSS2|7113|transmembrane protease, serine 2##EU090249|TMPRSS2|7113|transmembrane protease, serine 2##HM245389|TMPRSS2|7113|transmembrane protease, serine 2##HM245390|TMPRSS2|7113|transmembrane protease, serine 2##AK291813|TMPRSS2|7113|transmembrane protease, serine 2##AK296860|TMPRSS2|7113|transmembrane protease, serine 2##NM_001135099|TMPRSS2|7113|transmembrane protease, serine 2##BC051839|TMPRSS2|7113|transmembrane protease, serine 2##AF270487|TMPRSS2|7113|transmembrane protease, serine 2##BC035623|TMPRSS2|7113|transmembrane protease, serine 2##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15	0.990582	0.0	denovo_WM_7:-30:0.401	denovo_WM_7:-31:0.259	denovo_WM_7:-32:0.214
chr22	42615293	42615468	reg1010359.p1	4.063	+	AB527391 NM_005650 NM_181492	-4003	-	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-88499	-	AB463001 CU013213 CU013501 M20403 X08006 BC066877 BC067432 TSC_hg19_v1_chr22_-_42526809 BC106757 BC106758 BC126858 CR456430 BC075023 BC075024	-88573	-	BC038245 TSC_hg19_v1_chr22_-_42765218	149822	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	213001	-	BC031838 TSC_hg19_v1_chr22_-_42915796 BC041639 BC042335 AB527998 AK314650	300387	-	NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013213|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013501|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##M20403|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##X08006|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC066877|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC067432|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106757|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106758|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC126858|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CR456430|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075023|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075024|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC031838|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC041639|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC042335|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK314650|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)	0.99888	0.0	
chr3	187397436	187397530	reg1011147.p1	4.063	+	BC032625 AK312177 TSC_hg19_v1_chr3_-_187388181 NM_001048	-9331	-	BC013161 NM_022147 AJ251832 AY562238 DQ891046 DQ894225	-311285	+	BC106945 BC106946 TSC_hg19_v1_chr3_-_187009489 AK291686 AK129893 AK304334 AK300663 BX647237 AK291157 CR749615 BC039724 NM_001031849 NM_001879 NM_139125	-387844	-	BC068081 NM_001004312	22861	-	EU139066 NM_001134738	55198	-	S67779 NM_001130845	56782	-	BC032625|SST|6750|somatostatin##AK312177|SST|6750|somatostatin##NM_001048|SST|6750|somatostatin##BC013161|RTP4|64108|receptor (chemosensory) transporter protein 4##NM_022147|RTP4|64108|receptor (chemosensory) transporter protein 4##AJ251832|RTP4|64108|receptor (chemosensory) transporter protein 4##AY562238|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ891046|RTP4|64108|receptor (chemosensory) transporter protein 4##DQ894225|RTP4|64108|receptor (chemosensory) transporter protein 4##BC106945|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC106946|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291686|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK129893|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK304334|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK300663|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BX647237|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##AK291157|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##CR749615|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC039724|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001031849|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_001879|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##NM_139125|MASP1|5648|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)##BC068081|RTP2|344892|receptor (chemosensory) transporter protein 2##NM_001004312|RTP2|344892|receptor (chemosensory) transporter protein 2##EU139066|BCL6|604|B-cell CLL/lymphoma 6##NM_001134738|BCL6|604|B-cell CLL/lymphoma 6##S67779|BCL6|604|B-cell CLL/lymphoma 6##NM_001130845|BCL6|604|B-cell CLL/lymphoma 6	0.976535	0.0	denovo_WM_7:13:0.438	denovo_WM_7:14:0.526
chr3	87724059	87724163	reg1016907.p1	4.063	+	AB587506 L18781 X72215 X62429 D10216 NM_000306 NM_001122757	-398438	-	TSC_hg19_v1_chr3_+_87276461 NM_001244644 NM_014043 AK296072 AK002180 AL080122 AK002165 AK316585 AK222654 AF151842 BC001553 EU832121 EU832215 AB590670 CR533456	-447576	+	BC094780 TSC_hg19_v1_chr3_-_87040272	-683841	-	NM_000866	307614	+	BC052980 TSC_hg19_v1_chr3_-_88108150 AL117392 NM_001008390 NM_003663	384032	-	AF543494 NM_018293	464150	+	L18781|POU1F1|5449|POU class 1 homeobox 1##X72215|POU1F1|5449|POU class 1 homeobox 1##X62429|POU1F1|5449|POU class 1 homeobox 1##D10216|POU1F1|5449|POU class 1 homeobox 1##NM_000306|POU1F1|5449|POU class 1 homeobox 1##NM_001122757|POU1F1|5449|POU class 1 homeobox 1##NM_001244644|CHMP2B|25978|charged multivesicular body protein 2B##NM_014043|CHMP2B|25978|charged multivesicular body protein 2B##AK296072|CHMP2B|25978|charged multivesicular body protein 2B##AK002180|CHMP2B|25978|charged multivesicular body protein 2B##AL080122|CHMP2B|25978|charged multivesicular body protein 2B##AK002165|CHMP2B|25978|charged multivesicular body protein 2B##AK316585|CHMP2B|25978|charged multivesicular body protein 2B##AK222654|CHMP2B|25978|charged multivesicular body protein 2B##AF151842|CHMP2B|25978|charged multivesicular body protein 2B##BC001553|CHMP2B|25978|charged multivesicular body protein 2B##EU832121|CHMP2B|25978|charged multivesicular body protein 2B##EU832215|CHMP2B|25978|charged multivesicular body protein 2B##CR533456|CHMP2B|25978|charged multivesicular body protein 2B##BC094780|VGLL3|389136|vestigial like 3 (Drosophila)##NM_000866|HTR1F|3355|5-hydroxytryptamine (serotonin) receptor 1F##BC052980|CGGBP1|8545|CGG triplet repeat binding protein 1##AL117392|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_001008390|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_003663|CGGBP1|8545|CGG triplet repeat binding protein 1##AF543494|ZNF654|55279|zinc finger protein 654##NM_018293|ZNF654|55279|zinc finger protein 654	0.0	0.0	
chrX	44898604	44898698	reg1013896.p2	4.063	+	TSC_hg19_v1_chrX_+_44732433 NM_021140 AB208795	-166215	+	AF533018 NM_022076 AF143321 AY121807 AY156515 BC119755 BC119756 CR457159	-195338	+	TSC_hg19_v1_chrX_-_44402101 BC035015 BC042813 NM_173794	-496497	-	BC035375 AY358764 TSC_hg19_v1_chrX_-_45060106 BC137528 BC137529 AK024165 NM_024689 NM_176819	161462	-	NM_001129898 NM_001129899 NM_001129900 NM_017776 TSC_hg19_v1_chrX_+_46306706 AK289703 AK096413 AK000351	1408060	+	AK295054 AK308986 AY971607 NM_001039891 NM_001146291 NM_001190417	1506205	-	NM_021140|KDM6A|7403|lysine (K)-specific demethylase 6A##AB208795|KDM6A|7403|lysine (K)-specific demethylase 6A##AF533018|DUSP21|63904|dual specificity phosphatase 21##NM_022076|DUSP21|63904|dual specificity phosphatase 21##AF143321|DUSP21|63904|dual specificity phosphatase 21##AY121807|DUSP21|63904|dual specificity phosphatase 21##AY156515|DUSP21|63904|dual specificity phosphatase 21##BC119755|DUSP21|63904|dual specificity phosphatase 21##BC119756|DUSP21|63904|dual specificity phosphatase 21##CR457159|DUSP21|63904|dual specificity phosphatase 21##BC035015|FUNDC1|139341|FUN14 domain containing 1##BC042813|FUNDC1|139341|FUN14 domain containing 1##NM_173794|FUNDC1|139341|FUN14 domain containing 1##BC035375|CXorf36|79742|chromosome X open reading frame 36##AY358764|CXorf36|79742|chromosome X open reading frame 36##BC137528|CXorf36|79742|chromosome X open reading frame 36##BC137529|CXorf36|79742|chromosome X open reading frame 36##AK024165|CXorf36|79742|chromosome X open reading frame 36##NM_024689|CXorf36|79742|chromosome X open reading frame 36##NM_176819|CXorf36|79742|chromosome X open reading frame 36##NM_001129898|ZNF673|55634|zinc finger family member 673##NM_001129899|ZNF673|55634|zinc finger family member 673##NM_001129900|ZNF673|55634|zinc finger family member 673##NM_017776|ZNF673|55634|zinc finger family member 673##AK289703|ZNF673|55634|zinc finger family member 673##AK096413|ZNF673|55634|zinc finger family member 673##AK000351|ZNF673|55634|zinc finger family member 673##AK295054|ZNF674|641339|zinc finger protein 674##AK308986|ZNF674|641339|zinc finger protein 674##AY971607|ZNF674|641339|zinc finger protein 674##NM_001039891|ZNF674|641339|zinc finger protein 674##NM_001146291|ZNF674|641339|zinc finger protein 674##NM_001190417|ZNF674|641339|zinc finger protein 674	0.0	0.0	
chr10	13330828	13330905	reg1015903.p2	4.062	+	BC018068 NM_145314	-54539	-	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	-127298	+	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	-188721	+	NM_001037537	10879	-	TSC_hg19_v1_chr10_-_13342061 CR542055 DQ891007 DQ894185	11183	-	TSC_hg19_v1_chr10_-_13342064 AF023462 BC029512 AF112977 BC021011 NM_006214	11230	-	BC018068|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_145314|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_001037537|PHYH|5264|phytanoyl-CoA 2-hydroxylase##CR542055|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ891007|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ894185|PHYH|5264|phytanoyl-CoA 2-hydroxylase##AF023462|PHYH|5264|phytanoyl-CoA 2-hydroxylase##BC029512|PHYH|5264|phytanoyl-CoA 2-hydroxylase##AF112977|PHYH|5264|phytanoyl-CoA 2-hydroxylase##BC021011|PHYH|5264|phytanoyl-CoA 2-hydroxylase##NM_006214|PHYH|5264|phytanoyl-CoA 2-hydroxylase	1.080706	0.0	
chr10	38264440	38264578	reg1011637.p1	4.062	+	BC146820 TSC_hg19_v1_chr10_-_38147013 AK299357	-117510	-	BC132915 BC132917 BC110869 BC021819 AJ491695 AJ492196 NM_021045 TSC_hg19_v1_chr10_-_38146539	-118091	-	NM_001190489	-372651	-	AJ491696 NM_145011 TSC_hg19_v1_chr10_-_38265576 AK122958 BC036038 AK056452 AX721125	1018	-	TSC_hg19_v1_chr10_+_38299631 NM_006954 NM_006974 AK303445 AK292844 BC017760 AK027057 D31763	35086	+	TSC_hg19_v1_chr10_+_38383292 NM_001007094 NM_001178101 NM_003421 AK092012 AX747310 BX647089 AJ492195 BC015858	118774	+	BC146820|ZNF248|57209|zinc finger protein 248##AK299357|ZNF248|57209|zinc finger protein 248##BC132915|ZNF248|57209|zinc finger protein 248##BC132917|ZNF248|57209|zinc finger protein 248##BC110869|ZNF248|57209|zinc finger protein 248##BC021819|ZNF248|57209|zinc finger protein 248##AJ491695|ZNF248|57209|zinc finger protein 248##AJ492196|ZNF248|57209|zinc finger protein 248##NM_021045|ZNF248|57209|zinc finger protein 248##NM_001190489|MTRNR2L7|100288485|MT-RNR2-like 7##AJ491696|ZNF25|219749|zinc finger protein 25##NM_145011|ZNF25|219749|zinc finger protein 25##AK122958|ZNF25|219749|zinc finger protein 25##BC036038|ZNF25|219749|zinc finger protein 25##AK056452|ZNF25|219749|zinc finger protein 25##NM_006954|ZNF33A|7581|zinc finger protein 33A##NM_006974|ZNF33A|7581|zinc finger protein 33A##AK303445|ZNF33A|7581|zinc finger protein 33A##AK292844|ZNF33A|7581|zinc finger protein 33A##BC017760|ZNF33A|7581|zinc finger protein 33A##AK027057|ZNF33A|7581|zinc finger protein 33A##D31763|ZNF33A|7581|zinc finger protein 33A##NM_001007094|ZNF37A|7587|zinc finger protein 37A##NM_001178101|ZNF37A|7587|zinc finger protein 37A##NM_003421|ZNF37A|7587|zinc finger protein 37A##AK092012|ZNF37A|7587|zinc finger protein 37A##BX647089|ZNF37A|7587|zinc finger protein 37A##AJ492195|ZNF37A|7587|zinc finger protein 37A##BC015858|ZNF37A|7587|zinc finger protein 37A	0.0	0.0	
chr1	15579479	15579619	reg1013002.p1	4.062	+	AK057963 NM_052929	-5782	+	TSC_hg19_v1_chr1_+_15480249 AK001061 NM_001136218 NM_018022 BC000593 BC005177 AK098467	-99301	+	AK129922 TSC_hg19_v1_chr1_+_15479310	-100245	+	TSC_hg19_v1_chr1_+_15736390 NM_024329	156851	+	BC068473 TSC_hg19_v1_chr1_+_15736425 BC007233 BC014923 BC023611	156886	+	BC015118 CR749296 NM_007272 AK289447 BC059779 S82198	185398	+	AK057963|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_052929|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##AK001061|TMEM51|55092|transmembrane protein 51##NM_001136218|TMEM51|55092|transmembrane protein 51##NM_018022|TMEM51|55092|transmembrane protein 51##BC000593|TMEM51|55092|transmembrane protein 51##BC005177|TMEM51|55092|transmembrane protein 51##AK098467|TMEM51|55092|transmembrane protein 51##AK129922|TMEM51|55092|transmembrane protein 51##NM_024329|EFHD2|79180|EF-hand domain family, member D2##BC068473|EFHD2|79180|EF-hand domain family, member D2##BC007233|EFHD2|79180|EF-hand domain family, member D2##BC014923|EFHD2|79180|EF-hand domain family, member D2##BC023611|EFHD2|79180|EF-hand domain family, member D2##BC015118|CTRC|11330|chymotrypsin C (caldecrin)##CR749296|CTRC|11330|chymotrypsin C (caldecrin)##NM_007272|CTRC|11330|chymotrypsin C (caldecrin)##AK289447|CTRC|11330|chymotrypsin C (caldecrin)##BC059779|CTRC|11330|chymotrypsin C (caldecrin)##S82198|CTRC|11330|chymotrypsin C (caldecrin)	0.0	0.0	
chr11	82678405	82678567	reg1017191.p2	4.062	+	NM_145018 AK058145 TSC_hg19_v1_chr11_+_82612768 BC039268 AK096157 AK297366 AK292399 AK299581	-65712	+	TSC_hg19_v1_chr11_-_82611462 AB451270 AB451397 DQ893068 DQ896321 BC001500 AK312919 AK091786 AX747184 L13977 NM_005040 NM_199418	-66969	-	BC150621 TSC_hg19_v1_chr11_-_82444907 BC039262 NM_175885	-233588	-	AK312323 TSC_hg19_v1_chr11_-_82782872	104387	-	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	104411	-	BC031316 TSC_hg19_v1_chr11_+_82783118	104632	+	NM_145018|C11orf82|220042|chromosome 11 open reading frame 82##AK058145|C11orf82|220042|chromosome 11 open reading frame 82##BC039268|C11orf82|220042|chromosome 11 open reading frame 82##AK096157|C11orf82|220042|chromosome 11 open reading frame 82##AK297366|C11orf82|220042|chromosome 11 open reading frame 82##AK292399|C11orf82|220042|chromosome 11 open reading frame 82##AK299581|C11orf82|220042|chromosome 11 open reading frame 82##AB451270|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AB451397|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ893068|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##DQ896321|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC001500|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK312919|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##AK091786|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##L13977|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_005040|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##NM_199418|PRCP|5547|prolylcarboxypeptidase (angiotensinase C)##BC150621|FAM181B|220382|family with sequence similarity 181, member B##BC039262|FAM181B|220382|family with sequence similarity 181, member B##NM_175885|FAM181B|220382|family with sequence similarity 181, member B##AK312323|RAB30|27314|RAB30, member RAS oncogene family##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##BC031316|LOC100506233|100506233|uncharacterized LOC100506233	1.999335	0.0	denovo_WM_7:0:0.285	denovo_WM_7:-1:0.530	denovo_WM_7:13:0.290	denovo_WM_7:14:0.535
chr17	67166585	67166691	reg1016197.p1	4.062	+	BC125231 BC125232 AY028898 NM_080284 TSC_hg19_v1_chr17_-_67138037 BC070125 AK308431 BC029852	-28563	-	BC062472 AK057068 AY028899 NM_080283	-109548	-	BC130280 BC143971 BC143972 AK304286 BC010392 AB020629 BC047765 BC094689 AK304360 AK295876 BC037309 BC024003 NM_007168	-215182	-	AY028900 NM_080282 AY247065	74332	-	AK096664 NM_018672	145135	-	TSC_hg19_v1_chr17_-_67323275 BC029426 AJ512612 AJ275973 AK292592 NM_172232	156651	-	BC125231|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC125232|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##AY028898|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##NM_080284|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC070125|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##AK308431|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC029852|ABCA6|23460|ATP-binding cassette, sub-family A (ABC1), member 6##BC062472|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##AK057068|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##AY028899|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##NM_080283|ABCA9|10350|ATP-binding cassette, sub-family A (ABC1), member 9##BC130280|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC143971|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC143972|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AK304286|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC010392|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AB020629|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC047765|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC094689|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AK304360|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AK295876|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC037309|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##BC024003|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##NM_007168|ABCA8|10351|ATP-binding cassette, sub-family A (ABC1), member 8##AY028900|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##NM_080282|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##AY247065|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##AK096664|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_018672|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##BC029426|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ512612|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ275973|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AK292592|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_172232|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5	0.993377	0.0	
chr17	75491154	75491280	reg1013579.p2	4.062	+	AK056495 NM_001113495	-19893	+	AK299828 TSC_hg19_v1_chr17_+_75447450	-43828	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	-44435	+	TSC_hg19_v1_chr17_+_75543021 AK096234	51803	+	BC039479 NM_001142640 NM_018996	509065	+	TSC_hg19_v1_chr17_-_76124768 AK074065	633555	-	AK056495|SEPT9|10801|septin 9##NM_001113495|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK096234|LOC100507351|100507351|uncharacterized LOC100507351##BC039479|TNRC6C|57690|trinucleotide repeat containing 6C##NM_001142640|TNRC6C|57690|trinucleotide repeat containing 6C##NM_018996|TNRC6C|57690|trinucleotide repeat containing 6C##AK074065|TMC6|11322|transmembrane channel-like 6	0.0	0.891751	CTCF.p2:-13:0.892
chr17	76378630	76378735	reg1013250.p2	4.062	+	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-3952	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-22525	-	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-151219	+	NM_173628	194793	-	AK316277 TSC_hg19_v1_chr17_-_76719649	340965	-	TSC_hg19_v1_chr17_-_76719676 AK293894	341069	-	AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	0.99844	0.0	
chr2	141537218	141537334	reg1012416.p1	4.062	+	AF043467 AB162675 BC101461 BC101462 BC101463 BC104741 NM_007226	-1999470	-	TSC_hg19_v1_chr2_+_139259500 AK021919	-2277786	+	NM_001001664 BC071613 TSC_hg19_v1_chr2_+_139259435	-2277883	+	TSC_hg19_v1_chr2_-_142888540 AK054663	1351280	-	AF176832 NM_018557	1351993	-	NM_001032998 NM_001199241 NM_003937 AK223426 TSC_hg19_v1_chr2_+_143635213 U57721	2097930	+	AF043467|NXPH2|11249|neurexophilin 2##AB162675|NXPH2|11249|neurexophilin 2##BC101461|NXPH2|11249|neurexophilin 2##BC101462|NXPH2|11249|neurexophilin 2##BC101463|NXPH2|11249|neurexophilin 2##BC104741|NXPH2|11249|neurexophilin 2##NM_007226|NXPH2|11249|neurexophilin 2##NM_001001664|SPOPL|339745|speckle-type POZ protein-like##BC071613|SPOPL|339745|speckle-type POZ protein-like##AK054663|LRP1B|53353|low density lipoprotein receptor-related protein 1B##AF176832|LRP1B|53353|low density lipoprotein receptor-related protein 1B##NM_018557|LRP1B|53353|low density lipoprotein receptor-related protein 1B##NM_001032998|KYNU|8942|kynureninase##NM_001199241|KYNU|8942|kynureninase##NM_003937|KYNU|8942|kynureninase##AK223426|KYNU|8942|kynureninase##U57721|KYNU|8942|kynureninase	0.999414	0.0	
chr4	169644979	169645089	reg1008398.p1	4.062	+	TSC_hg19_v1_chr4_+_169552755 NM_001166109 AK095512	-92238	+	TSC_hg19_v1_chr4_+_169418204 AF464873 NM_001166108 NM_016081 BC140850 BC144666	-226814	+	TSC_hg19_v1_chr4_-_169401630 CR933601 NM_001012967	-243414	-	TSC_hg19_v1_chr4_+_169753245 NM_001166110 AB023209	108143	+	BC021973 BC033650 TSC_hg19_v1_chr4_-_169931407 AK027337 AK291756 AK299847 AL833393 NM_032783	286424	-	BC041023 TSC_hg19_v1_chr4_-_170077830	432785	-	NM_001166109|PALLD|23022|palladin, cytoskeletal associated protein##AK095512|PALLD|23022|palladin, cytoskeletal associated protein##AF464873|PALLD|23022|palladin, cytoskeletal associated protein##NM_001166108|PALLD|23022|palladin, cytoskeletal associated protein##NM_016081|PALLD|23022|palladin, cytoskeletal associated protein##BC140850|PALLD|23022|palladin, cytoskeletal associated protein##BC144666|PALLD|23022|palladin, cytoskeletal associated protein##CR933601|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001012967|DDX60L|91351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like##NM_001166110|PALLD|23022|palladin, cytoskeletal associated protein##AB023209|PALLD|23022|palladin, cytoskeletal associated protein##BC021973|CBR4|84869|carbonyl reductase 4##BC033650|CBR4|84869|carbonyl reductase 4##AK027337|CBR4|84869|carbonyl reductase 4##AK291756|CBR4|84869|carbonyl reductase 4##AL833393|CBR4|84869|carbonyl reductase 4##NM_032783|CBR4|84869|carbonyl reductase 4##BC041023|SH3RF1|57630|SH3 domain containing ring finger 1	0.996915	0.0	
chr5	32542857	32543037	reg1015404.p2	4.062	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-98011	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-98169	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-139594	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	42709	+	NM_001204376 AK300094 AK308301	167803	+	AK290870 NM_000908 NM_001204375 M59305	168541	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.0	0.0	
chr9	114782571	114782643	reg1014269.p1	4.062	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-123140	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-123493	+	AL833535 NM_173521	-236832	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	154913	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	312680	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	313242	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.121984	0.0	
chr11	3900791	3900862	reg1010738.p1	4.061	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-23897	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-38627	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-38671	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	215163	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	215240	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	215333	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.0	0.0	
chr13	76063871	76063994	reg1014855.p1	4.061	+	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	-7594	-	CR749622 TSC_hg19_v1_chr13_-_75901948	-162010	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1355536	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	48046	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	59992	+	AF330045 NM_005358	130637	+	AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##AF330045|LMO7|4008|LIM domain 7##NM_005358|LMO7|4008|LIM domain 7	0.982943	0.0	denovo_WM_7:-45:0.317	denovo_WM_7:-46:0.472
chr6	71296061	71296144	reg1010632.p1	4.061	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	-19477	+	NM_001162529 AB037832	-159945	+	TSC_hg19_v1_chr6_+_71123224 CR749254 BC131782	-172888	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	81421	+	TSC_hg19_v1_chr6_+_71377620 AK315579 BC028074 BC008672 AK303387 BC036123 AK023221 AY055003 AY055004 AK222711 AK290448 CU688386	81553	+	AB075843 NM_080742	370661	-	BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##NM_001162529|FAM135A|57579|family with sequence similarity 135, member A##AB037832|FAM135A|57579|family with sequence similarity 135, member A##CR749254|FAM135A|57579|family with sequence similarity 135, member A##BC131782|FAM135A|57579|family with sequence similarity 135, member A##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1##AK315579|SMAP1|60682|small ArfGAP 1##BC028074|SMAP1|60682|small ArfGAP 1##BC008672|SMAP1|60682|small ArfGAP 1##AK303387|SMAP1|60682|small ArfGAP 1##BC036123|SMAP1|60682|small ArfGAP 1##AK023221|SMAP1|60682|small ArfGAP 1##AY055003|SMAP1|60682|small ArfGAP 1##AY055004|SMAP1|60682|small ArfGAP 1##AK222711|SMAP1|60682|small ArfGAP 1##AK290448|SMAP1|60682|small ArfGAP 1##AB075843|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_080742|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	0.998998	0.0	
chr8	135216942	135217058	reg1016263.p1	4.061	+	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	-632903	-	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-907503	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-1013670	+	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	491794	-	TSC_hg19_v1_chr8_-_135725053 AB463359	508079	-	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	508274	-	BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing	0.96999	0.0	denovo_WM_7:-10:0.498	denovo_WM_7:-13:0.316
chr9	114793316	114793417	reg1012544.p1	4.061	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-133899	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-134252	+	AL833535 NM_173521	-247591	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	144154	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	301921	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	302483	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	1.856787	0.0	denovo_WM_7:-69:0.992	denovo_WM_7:96:0.788
chrX	49680359	49680453	reg1016524.p1	4.061	+	NM_001145073	-35937	+	NM_007003 AK312039 AF275258 AJ005894 AK092503 AX747575	-86479	+	BC004861 AF058989 NM_003785	-219825	-	TSC_hg19_v1_chrX_+_49687274 AK092049 NM_001127898 NM_001127899 AK056560	6840	+	NM_000084 AK308089 TSC_hg19_v1_chrX_+_49832243 AK290940	151839	+	NM_139289 BC033007 BC070150 TSC_hg19_v1_chrX_-_49965024	284607	-	NM_001145073|USP27X|389856|ubiquitin specific peptidase 27, X-linked##NM_007003|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK312039|PAGE4|9506|P antigen family, member 4 (prostate associated)##AF275258|PAGE4|9506|P antigen family, member 4 (prostate associated)##AJ005894|PAGE4|9506|P antigen family, member 4 (prostate associated)##AK092503|PAGE4|9506|P antigen family, member 4 (prostate associated)##BC004861|PAGE1|8712|P antigen family, member 1 (prostate associated)##AF058989|PAGE1|8712|P antigen family, member 1 (prostate associated)##NM_003785|PAGE1|8712|P antigen family, member 1 (prostate associated)##AK092049|CLCN5|1184|chloride channel 5##NM_001127898|CLCN5|1184|chloride channel 5##NM_001127899|CLCN5|1184|chloride channel 5##AK056560|CLCN5|1184|chloride channel 5##NM_000084|CLCN5|1184|chloride channel 5##AK308089|CLCN5|1184|chloride channel 5##AK290940|CLCN5|1184|chloride channel 5##NM_139289|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC033007|AKAP4|8852|A kinase (PRKA) anchor protein 4##BC070150|AKAP4|8852|A kinase (PRKA) anchor protein 4	0.811269	0.963863	CTCF.p2:19:0.964	denovo_WM_7:-49:0.801
chr1	16163714	16163788	reg1004375.p4	4.060	+	TSC_hg19_v1_chr1_-_16162350 AK094772	-1395	-	BC012991 TSC_hg19_v1_chr1_-_16161389	-2417	-	TSC_hg19_v1_chr1_-_16134192 NM_001089591	-29559	-	AF356524 NM_015001 TSC_hg19_v1_chr1_+_16174380	10628	+	TSC_hg19_v1_chr1_+_16259065 BC172907	95360	+	TSC_hg19_v1_chr1_-_16302597 BC126163 BC143965 BC143968 Y09723 AK302610 AK301896 AK309081 AK311083 AK315201 AK303823 AK299820 AK223618 AK294796 NM_001242884 NM_003443	138719	-	AK094772|FLJ37453|729614|uncharacterized LOC729614##NM_001089591|UQCRHL|440567|ubiquinol-cytochrome c reductase hinge protein-like##AF356524|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##NM_015001|SPEN|23013|spen homolog, transcriptional regulator (Drosophila)##BC126163|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143965|ZBTB17|7709|zinc finger and BTB domain containing 17##BC143968|ZBTB17|7709|zinc finger and BTB domain containing 17##Y09723|ZBTB17|7709|zinc finger and BTB domain containing 17##AK302610|ZBTB17|7709|zinc finger and BTB domain containing 17##AK301896|ZBTB17|7709|zinc finger and BTB domain containing 17##AK309081|ZBTB17|7709|zinc finger and BTB domain containing 17##AK311083|ZBTB17|7709|zinc finger and BTB domain containing 17##AK315201|ZBTB17|7709|zinc finger and BTB domain containing 17##AK303823|ZBTB17|7709|zinc finger and BTB domain containing 17##AK299820|ZBTB17|7709|zinc finger and BTB domain containing 17##AK223618|ZBTB17|7709|zinc finger and BTB domain containing 17##AK294796|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_001242884|ZBTB17|7709|zinc finger and BTB domain containing 17##NM_003443|ZBTB17|7709|zinc finger and BTB domain containing 17	0.0	0.0	
chr12	110474556	110474664	reg1012209.p2	4.060	+	AK302535 BC032833 TSC_hg19_v1_chr12_+_110437393 CU691256 AY364251	-37167	+	TSC_hg19_v1_chr12_+_110437339 AF064604	-37277	+	TSC_hg19_v1_chr12_+_110437234 AK025261 BC057817 NM_033121	-37349	+	TSC_hg19_v1_chr12_-_110486328 AK021447 BC041968	11719	-	AK097461 NM_207435	30889	-	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	87611	+	AK302535|ANKRD13A|88455|ankyrin repeat domain 13A##BC032833|ANKRD13A|88455|ankyrin repeat domain 13A##AY364251|ANKRD13A|88455|ankyrin repeat domain 13A##AF064604|ANKRD13A|88455|ankyrin repeat domain 13A##AK025261|ANKRD13A|88455|ankyrin repeat domain 13A##BC057817|ANKRD13A|88455|ankyrin repeat domain 13A##NM_033121|ANKRD13A|88455|ankyrin repeat domain 13A##AK021447|C12orf76|400073|chromosome 12 open reading frame 76##BC041968|C12orf76|400073|chromosome 12 open reading frame 76##AK097461|C12orf76|400073|chromosome 12 open reading frame 76##NM_207435|C12orf76|400073|chromosome 12 open reading frame 76##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)	0.920874	0.012211	denovo_WM_7:-48:0.453	denovo_WM_7:-49:0.326
chr1	218478174	218478302	reg1009128.p1	4.060	+	AK290066 BC003668 TSC_hg19_v1_chr1_+_218458652 BC020641 AF151873	-19569	+	NM_016052 TSC_hg19_v1_chr1_+_218458635	-19606	+	AY963797 AK310291 AK098591 BC014608 NM_138796 TSC_hg19_v1_chr1_+_217804714 EU832110 EU832204	-673545	+	NM_001135599 NM_003238 TSC_hg19_v1_chr1_+_218518677 AB209842	40473	+	M19154 TSC_hg19_v1_chr1_+_218519634	41367	+	TSC_hg19_v1_chr1_+_219347170 NM_138794	868920	+	AK290066|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##BC003668|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##BC020641|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##AF151873|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##NM_016052|RRP15|51018|ribosomal RNA processing 15 homolog (S. cerevisiae)##AY963797|SPATA17|128153|spermatogenesis associated 17##AK310291|SPATA17|128153|spermatogenesis associated 17##AK098591|SPATA17|128153|spermatogenesis associated 17##BC014608|SPATA17|128153|spermatogenesis associated 17##NM_138796|SPATA17|128153|spermatogenesis associated 17##EU832110|SPATA17|128153|spermatogenesis associated 17##EU832204|SPATA17|128153|spermatogenesis associated 17##NM_001135599|TGFB2|7042|transforming growth factor, beta 2##NM_003238|TGFB2|7042|transforming growth factor, beta 2##AB209842|TGFB2|7042|transforming growth factor, beta 2##M19154|TGFB2|7042|transforming growth factor, beta 2##NM_138794|LYPLAL1|127018|lysophospholipase-like 1	0.0	0.0	
chr12	833672	833791	reg1009862.p1	4.060	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-61016	-	TSC_hg19_v1_chr12_-_752800 AK298043	-80912	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-81553	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	28425	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	29025	+	BC013629 TSC_hg19_v1_chr12_+_1017145	183351	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.0	0.0	
chr15	100346120	100346259	reg1014543.p2	4.060	+	TSC_hg19_v1_chr15_-_100273626 BC041097 NM_152449 AK290296 AK056718	-72555	-	BX640928 TSC_hg19_v1_chr15_-_100273612	-72585	-	TSC_hg19_v1_chr15_-_100273591 BC084545 AK124852	-72623	-	AB527357 AJ315735 NM_139057	535954	-	BC034500 BC034970 NM_178842	738708	-	AK292972 BC010363 TSC_hg19_v1_chr15_-_101142377 AK001445 AK298946 NM_001040616	796220	-	BC041097|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##NM_152449|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##AK290296|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##AK056718|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##BX640928|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##BC084545|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##AK124852|LYSMD4|145748|LysM, putative peptidoglycan-binding, domain containing 4##AJ315735|ADAMTS17|170691|ADAM metallopeptidase with thrombospondin type 1 motif, 17##NM_139057|ADAMTS17|170691|ADAM metallopeptidase with thrombospondin type 1 motif, 17##BC034500|CERS3|204219|ceramide synthase 3##BC034970|CERS3|204219|ceramide synthase 3##NM_178842|CERS3|204219|ceramide synthase 3##AK292972|LINS|55180|lines homolog (Drosophila)##BC010363|LINS|55180|lines homolog (Drosophila)##AK001445|LINS|55180|lines homolog (Drosophila)##AK298946|LINS|55180|lines homolog (Drosophila)##NM_001040616|LINS|55180|lines homolog (Drosophila)	1.014866	0.0	denovo_WM_7:77:0.427	denovo_WM_7:78:0.449
chr2	97003964	97004057	reg1012439.p2	4.060	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-2474	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-2534	+	NM_178495 NM_001163524 BC034503	-12062	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	198475	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	300009	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	300057	-	BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	1.012338	0.0	
chr5	131856747	131856822	reg1001601.p2	4.060	+	X14454 BC009483 AK298770 AK314025 NM_002198 TSC_hg19_v1_chr5_-_131826466	-30303	-	TSC_hg19_v1_chr5_+_131746621 AK096941 AK309191 AK128882	-110156	+	TSC_hg19_v1_chr5_+_131705407 NM_003060 AF057164 BC012325 AB015050 AK313230 CU680286 DQ893671 DQ895818 AB291606	-151276	+	AB591005 BC066279 BC066280 BC066281 BC066282 BC069137 NM_000879 X04688 X12705	22408	-	TSC_hg19_v1_chr5_+_131892670 NM_005732 BC140005 U63139 AK290597 BC108282 AF057299 AF057300 BC062603 BC073850 BC136436	35856	+	BC096138 BC096139 BC096140 BC096141 NM_002188 X69079 AB463799 L06801 AF043334	137106	+	X14454|IRF1|3659|interferon regulatory factor 1##BC009483|IRF1|3659|interferon regulatory factor 1##AK298770|IRF1|3659|interferon regulatory factor 1##AK314025|IRF1|3659|interferon regulatory factor 1##NM_002198|IRF1|3659|interferon regulatory factor 1##AK096941|C5orf56|441108|chromosome 5 open reading frame 56##AK309191|C5orf56|441108|chromosome 5 open reading frame 56##AK128882|C5orf56|441108|chromosome 5 open reading frame 56##NM_003060|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AF057164|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC012325|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB015050|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AK313230|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ893671|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##DQ895818|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##AB291606|SLC22A5|6584|solute carrier family 22 (organic cation/carnitine transporter), member 5##BC066279|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066280|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066281|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC066282|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##BC069137|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_000879|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X04688|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##X12705|IL5|3567|interleukin 5 (colony-stimulating factor, eosinophil)##NM_005732|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC140005|RAD50|10111|RAD50 homolog (S. cerevisiae)##U63139|RAD50|10111|RAD50 homolog (S. cerevisiae)##AK290597|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC108282|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057299|RAD50|10111|RAD50 homolog (S. cerevisiae)##AF057300|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC062603|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC073850|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC136436|RAD50|10111|RAD50 homolog (S. cerevisiae)##BC096138|IL13|3596|interleukin 13##BC096139|IL13|3596|interleukin 13##BC096140|IL13|3596|interleukin 13##BC096141|IL13|3596|interleukin 13##NM_002188|IL13|3596|interleukin 13##X69079|IL13|3596|interleukin 13##L06801|IL13|3596|interleukin 13##AF043334|IL13|3596|interleukin 13	0.159857	0.0	
chr5	160807797	160807914	reg1010393.p2	4.060	+	AB018258 AK295081 AK090832 AX746642 NM_025153	-528724	-	AK025130 TSC_hg19_v1_chr5_-_160112393	-695516	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-958952	+	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	167271	-	NM_000811	304802	+	AK289792 NM_000806 AK295160	466386	+	AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6##AK289792|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_000806|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK295160|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1	0.0	0.0	
chr10	104222849	104222942	reg1012313.p1	4.059	+	TSC_hg19_v1_chr10_+_104221184 AK301612 AY358808 NM_024789	-1713	+	TSC_hg19_v1_chr10_+_104221151 AK296583	-1745	+	BC126459 AK024342 NM_024886	-11624	-	CU674342 AM393135 DQ892689 DQ895934 AB462953 BC026016 TSC_hg19_v1_chr10_-_104262470 BC000693 Z14978 X82206 AK302072 AK312506 AK297362 AK297620 NM_005736	39562	-	TSC_hg19_v1_chr10_+_104263721 NM_001178133 NM_016169	40824	+	TSC_hg19_v1_chr10_+_104263759 AK312319 BC013291 AF175770 AF144231 AF159447 AY358550 AF222345 AB590231 DQ892586 DQ895804 AF172319	40924	+	AK301612|TMEM180|79847|transmembrane protein 180##AY358808|TMEM180|79847|transmembrane protein 180##NM_024789|TMEM180|79847|transmembrane protein 180##AK296583|TMEM180|79847|transmembrane protein 180##BC126459|C10orf95|79946|chromosome 10 open reading frame 95##AK024342|C10orf95|79946|chromosome 10 open reading frame 95##NM_024886|C10orf95|79946|chromosome 10 open reading frame 95##AM393135|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ892689|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##DQ895934|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC026016|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##BC000693|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##Z14978|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##X82206|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK302072|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK312506|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297362|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##AK297620|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_005736|ACTR1A|10121|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)##NM_001178133|SUFU|51684|suppressor of fused homolog (Drosophila)##NM_016169|SUFU|51684|suppressor of fused homolog (Drosophila)##AK312319|SUFU|51684|suppressor of fused homolog (Drosophila)##BC013291|SUFU|51684|suppressor of fused homolog (Drosophila)##AF175770|SUFU|51684|suppressor of fused homolog (Drosophila)##AF144231|SUFU|51684|suppressor of fused homolog (Drosophila)##AF159447|SUFU|51684|suppressor of fused homolog (Drosophila)##AY358550|SUFU|51684|suppressor of fused homolog (Drosophila)##AF222345|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ892586|SUFU|51684|suppressor of fused homolog (Drosophila)##DQ895804|SUFU|51684|suppressor of fused homolog (Drosophila)##AF172319|SUFU|51684|suppressor of fused homolog (Drosophila)	0.999844	0.0	
chr10	79373595	79373702	reg1012004.p1	4.059	+	AF267860 NM_032024	-1831130	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-2212083	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-2212167	-	AF118141 TSC_hg19_v1_chr10_-_79397246	23577	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	23688	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	23758	-	AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	0.100529	0.0	
chr1	235146882	235146968	reg1013017.p2	4.059	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-251151	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-401679	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-403067	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	145164	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	145306	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	177638	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr14	23981621	23981721	reg1017401.p2	4.059	+	TSC_hg19_v1_chr14_+_23938911 AK291875 AL050003 BC030817 AK022215 CU689028 EU832521 EU832603	-42758	+	TSC_hg19_v1_chr14_+_23938899 NM_001042635 NM_015514 AK124318	-42780	+	M58018 TSC_hg19_v1_chr14_-_23904870 AK307590 EU747717 NM_000257	-76812	-	BC131533 TSC_hg19_v1_chr14_-_24020861 AB028979 NM_033400	39149	-	TSC_hg19_v1_chr14_+_24025262 NM_001126339 NM_024328 BX161435 AK098604 AK057691 BC002984	43671	+	AK310524 TSC_hg19_v1_chr14_-_24025427	43767	-	AK291875|NGDN|25983|neuroguidin, EIF4E binding protein##AL050003|NGDN|25983|neuroguidin, EIF4E binding protein##BC030817|NGDN|25983|neuroguidin, EIF4E binding protein##AK022215|NGDN|25983|neuroguidin, EIF4E binding protein##EU832521|NGDN|25983|neuroguidin, EIF4E binding protein##EU832603|NGDN|25983|neuroguidin, EIF4E binding protein##NM_001042635|NGDN|25983|neuroguidin, EIF4E binding protein##NM_015514|NGDN|25983|neuroguidin, EIF4E binding protein##AK124318|NGDN|25983|neuroguidin, EIF4E binding protein##M58018|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##AK307590|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##EU747717|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##NM_000257|MYH7|4625|myosin, heavy chain 7, cardiac muscle, beta##BC131533|ZFHX2|85446|zinc finger homeobox 2##AB028979|ZFHX2|85446|zinc finger homeobox 2##NM_033400|ZFHX2|85446|zinc finger homeobox 2##NM_001126339|THTPA|79178|thiamine triphosphatase##NM_024328|THTPA|79178|thiamine triphosphatase##BX161435|THTPA|79178|thiamine triphosphatase##AK098604|THTPA|79178|thiamine triphosphatase##AK057691|THTPA|79178|thiamine triphosphatase##BC002984|THTPA|79178|thiamine triphosphatase	0.83227	0.0	denovo_WM_7:15:0.537
chr17	63024468	63024648	reg1017904.p1	4.059	+	TSC_hg19_v1_chr17_-_63009302 AK026902	-15252	-	TSC_hg19_v1_chr17_-_62971685 BX537538 AK056627 BC063466 AK311317	-52938	-	TSC_hg19_v1_chr17_-_62915587 AK294371	-108962	-	TSC_hg19_v1_chr17_-_63052724 AB528470 AF493902 CU691408 DQ893572 DQ894448 AK313672	28160	-	TSC_hg19_v1_chr17_-_63052756 L22075 BC036756	28202	-	BC011925 TSC_hg19_v1_chr17_-_63052851	28275	-	AK026902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BX537538|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK056627|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##BC063466|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK311317|AMZ2P1|201283|archaelysin family metallopeptidase 2 pseudogene 1##AK294371|LRRC37A3|374819|leucine rich repeat containing 37, member A3##AF493902|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ893572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##DQ894448|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##AK313672|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##L22075|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC036756|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13	0.995562	0.0	
chr18	56808896	56808994	reg1015101.p1	4.059	+	TSC_hg19_v1_chr18_+_56807119 AK314107 AF212233 AK311213 NM_033280 AK295346 AK307127 BC009703 CU679449	-1798	+	TSC_hg19_v1_chr18_+_56531281 BC036366	-277596	+	TSC_hg19_v1_chr18_+_56530714 AB046849	-278090	+	TSC_hg19_v1_chr18_+_56887389 AK307264 BC004488 NM_001012512 NM_001012513 NM_002091 K02054 DQ893451 DQ896223 AB528662 AB102889 BT006803	78498	+	BC051901 AF115392 NM_013435 AB593018	131709	-	EU831768 EU831846 AY286502 BC065562 BX640655 AB593158 BX648518 BC106887 BC106888 AK123184 NM_181654	176841	-	AK314107|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AF212233|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##NM_033280|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK295346|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307127|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC009703|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC036366|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##AK307264|GRP|2922|gastrin-releasing peptide##BC004488|GRP|2922|gastrin-releasing peptide##NM_001012512|GRP|2922|gastrin-releasing peptide##NM_001012513|GRP|2922|gastrin-releasing peptide##NM_002091|GRP|2922|gastrin-releasing peptide##K02054|GRP|2922|gastrin-releasing peptide##DQ893451|GRP|2922|gastrin-releasing peptide##DQ896223|GRP|2922|gastrin-releasing peptide##AB102889|GRP|2922|gastrin-releasing peptide##BT006803|GRP|2922|gastrin-releasing peptide##BC051901|RAX|30062|retina and anterior neural fold homeobox##AF115392|RAX|30062|retina and anterior neural fold homeobox##NM_013435|RAX|30062|retina and anterior neural fold homeobox##AB593018|RAX|30062|retina and anterior neural fold homeobox##EU831768|CPLX4|339302|complexin 4##EU831846|CPLX4|339302|complexin 4##AY286502|CPLX4|339302|complexin 4##BC065562|CPLX4|339302|complexin 4##BX640655|CPLX4|339302|complexin 4##AB593158|CPLX4|339302|complexin 4##BX648518|CPLX4|339302|complexin 4##BC106887|CPLX4|339302|complexin 4##BC106888|CPLX4|339302|complexin 4##AK123184|CPLX4|339302|complexin 4##NM_181654|CPLX4|339302|complexin 4	0.998466	0.0	denovo_WM_7:-40:0.246	denovo_WM_7:-42:0.471
chr19	17457120	17457232	reg1016672.p1	4.059	+	NM_001128855 NM_032620 NM_133644 AF360742 AF360743 AY078987 AY078988 AK298485 AK027606 AK291929 BC019261 TSC_hg19_v1_chr19_+_17448396 BC017207 AK311442 AF360744 DQ892217 DQ895413 CU676414 CU677863	-8804	+	NM_001195422 AK297953	-11377	+	BC037307 TSC_hg19_v1_chr19_-_17445581 AB046843 NM_020959	-11540	-	CU691156 TSC_hg19_v1_chr19_-_17488155 AF348827 BC050365 BC056414 NM_031310 AF326591 AL834363 AK096030 AK313837	30956	-	CU689786 D28137 NM_004335 AK223124 AK291099 AK303593 TSC_hg19_v1_chr19_-_17516428 BC033873	59243	-	AK311380 AK055623 TSC_hg19_v1_chr19_+_17516630	59390	+	NM_001128855|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_032620|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_133644|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360742|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360743|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078987|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AY078988|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK298485|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK027606|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK291929|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC019261|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC017207|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK311442|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AF360744|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ892217|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##DQ895413|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##NM_001195422|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##AK297953|GTPBP3|84705|GTP binding protein 3 (mitochondrial)##BC037307|ANO8|57719|anoctamin 8##AB046843|ANO8|57719|anoctamin 8##NM_020959|ANO8|57719|anoctamin 8##AF348827|PLVAP|83483|plasmalemma vesicle associated protein##BC050365|PLVAP|83483|plasmalemma vesicle associated protein##BC056414|PLVAP|83483|plasmalemma vesicle associated protein##NM_031310|PLVAP|83483|plasmalemma vesicle associated protein##AF326591|PLVAP|83483|plasmalemma vesicle associated protein##AL834363|PLVAP|83483|plasmalemma vesicle associated protein##AK096030|PLVAP|83483|plasmalemma vesicle associated protein##AK313837|PLVAP|83483|plasmalemma vesicle associated protein##D28137|BST2|684|bone marrow stromal cell antigen 2##NM_004335|BST2|684|bone marrow stromal cell antigen 2##AK223124|BST2|684|bone marrow stromal cell antigen 2##AK291099|BST2|684|bone marrow stromal cell antigen 2##AK303593|BST2|684|bone marrow stromal cell antigen 2##BC033873|BST2|684|bone marrow stromal cell antigen 2##AK311380|LOC100507535|100507535|uncharacterized LOC100507535##AK055623|LOC100507535|100507535|uncharacterized LOC100507535	0.0	0.850354	CTCF.p2:2:0.850
chr9	114839663	114839729	reg1014099.p2	4.059	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-180229	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-180582	+	AL833535 NM_173521	-293921	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	97824	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	255591	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	256153	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.0	0.0	
chr10	73595566	73595697	reg1011076.p1	4.058	+	AY563161 AY563162 NM_001171935 NM_001171936	-23992	+	AY563165 AY563166 NM_001171933 NM_001171934	-40104	+	CU676566 BC020568 AY265805 TSC_hg19_v1_chr10_-_73533278 EF506490 AK024449 BC111048 AY358379 NM_022153	-62325	-	TSC_hg19_v1_chr10_-_73611004 BT006849 CR456746 CU678650 DQ893009 DQ896255 M60255 M60257 M60258 AB527305 BC001503 J03015 M32221 D00422 M81355 AB209776 BC004275 BC007612	15350	-	AK223290 AK293672 AK307721 TSC_hg19_v1_chr10_-_73611007 AK129790 J03077 AK057878 BC091483	15386	-	AK299184 TSC_hg19_v1_chr10_-_73611043	15412	-	AY563161|CDH23|64072|cadherin-related 23##AY563162|CDH23|64072|cadherin-related 23##NM_001171935|CDH23|64072|cadherin-related 23##NM_001171936|CDH23|64072|cadherin-related 23##AY563165|CDH23|64072|cadherin-related 23##AY563166|CDH23|64072|cadherin-related 23##NM_001171933|CDH23|64072|cadherin-related 23##NM_001171934|CDH23|64072|cadherin-related 23##BC020568|C10orf54|64115|chromosome 10 open reading frame 54##AY265805|C10orf54|64115|chromosome 10 open reading frame 54##EF506490|C10orf54|64115|chromosome 10 open reading frame 54##AK024449|C10orf54|64115|chromosome 10 open reading frame 54##BC111048|C10orf54|64115|chromosome 10 open reading frame 54##AY358379|C10orf54|64115|chromosome 10 open reading frame 54##NM_022153|C10orf54|64115|chromosome 10 open reading frame 54##BT006849|PSAP|5660|prosaposin##CR456746|PSAP|5660|prosaposin##DQ893009|PSAP|5660|prosaposin##DQ896255|PSAP|5660|prosaposin##M60255|PSAP|5660|prosaposin##M60257|PSAP|5660|prosaposin##M60258|PSAP|5660|prosaposin##BC001503|PSAP|5660|prosaposin##J03015|PSAP|5660|prosaposin##M32221|PSAP|5660|prosaposin##D00422|PSAP|5660|prosaposin##M81355|PSAP|5660|prosaposin##AB209776|PSAP|5660|prosaposin##BC004275|PSAP|5660|prosaposin##BC007612|PSAP|5660|prosaposin##AK223290|PSAP|5660|prosaposin##AK293672|PSAP|5660|prosaposin##AK307721|PSAP|5660|prosaposin##AK129790|PSAP|5660|prosaposin##J03077|PSAP|5660|prosaposin##AK057878|PSAP|5660|prosaposin##BC091483|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin	0.982282	0.0	denovo_WM_7:-41:0.241	denovo_WM_7:-42:0.241	denovo_WM_7:-43:0.241	denovo_WM_7:-44:0.241
chr14	62506679	62506784	reg1017202.p1	4.058	+	AJ617628 NM_031914 BC117363 BC143598 HQ258344 AB102949	-44093	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	-277612	+	FJ790247 NM_001243084	-342392	+	TSC_hg19_v1_chr14_+_62584125 BX248751	77427	+	AF418206 AF472412 AF493798 NM_139318 NM_172375 BC073979	1005198	-	AK074484 NM_172376	1061852	-	AJ617628|SYT16|83851|synaptotagmin XVI##NM_031914|SYT16|83851|synaptotagmin XVI##BC117363|SYT16|83851|synaptotagmin XVI##BC143598|SYT16|83851|synaptotagmin XVI##HQ258344|SYT16|83851|synaptotagmin XVI##AB102949|SYT16|83851|synaptotagmin XVI##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX248751|FLJ43390|646113|uncharacterized LOC646113##AF418206|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AF472412|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AF493798|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_139318|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_172375|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##BC073979|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AK074484|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_172376|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5	0.983775	0.0	denovo_WM_7:20:0.351	denovo_WM_7:22:0.601
chr5	158486368	158486499	reg1015933.p2	4.058	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1200343	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1302053	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1315693	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	40024	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	40309	-	AK304228 NM_001199382	148215	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.942801	0.0	denovo_WM_7:-56:0.534
chr6	15578991	15579080	reg1016773.p1	4.058	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-329922	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-330134	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-332623	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	84142	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	84255	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	550267	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.0	0.0	
chr6	31171324	31171473	reg1003775.p1	4.058	+	AM851126 AM851121 AM851123 AM851125 AY730056 FM177952 FM177953 FM177954 FM177955 FM177956 FM177959 FM177960 FM177961 FM177962 FM177963 FM177965 FM177968 GU480808 GU480809 GU480810 GU480811 GU480812 GU480813 GU480815 GU480816 GU480817 GU480818 GU480819 GU480820 GU480821 GU480822 GU480823 GU480824 GU480825 GU480826 GU480827 GU480828 GU480829 GU480830 GU480844 GU480856 GU480886 GU480888 GU480891 GU480897 GU480915 HQ122658 HQ122659 HQ122660 HQ122661 HQ122662 HQ122663 HQ122664 HQ122665 HQ122666 HQ122667 HQ122668 HQ122669 HQ122670 HQ122671 HQ122672 HQ122673 HQ122674 HQ122675 HQ122860 HQ122904 AB528279 HQ258221 HQ258573 BC069246 Z11898 AM851115 AM851118 AM851116 AM851117 AM851119 AM851120 BC117435 BC117437 NM_002701	-33083	-	DQ486515 DQ486516 NM_001173531 NM_203289	-36784	-	TSC_hg19_v1_chr6_+_31126735 S53374	-44597	+	M28207 M24096 M21963 U07230 Z47377 U74387 AJ005199 AJ440716 AJ537578 D49820 D83741 FN662479 M11886 M24031 U06835 M28206 M26712 L20091 CU675811 BC007814 BC010542 AB590141 AF168611 AF196489 AF405691 AJ010748 AJ010749 AM237285 AY732487 D12471 D31817 D38526 D49552 D49819 D50852 D50853 D50854 D64145 D64146 D64147 D64148 D64149 D64150 D64151 D64152 D83029 D83030 D83031 DQ891896 DQ895082 L38251 M26429 M26430 M84171 M84173 M84174 M84386 M99388 M99389 M99390 U06487 U06695 U06696 U09853 U41386 U41420 U57028 U62824 X73518 X76189 X78343 X82122 X83401 X87841 X96582 X97321 X98742 Y09156 Y10520 Y11843 Z15144 Z33459 Z46809 Z46810 Z83247 M28160 X58536 BC002463 X67818 X70856 X70857 TSC_hg19_v1_chr6_-_31239870 BC004489 BC033293 BC008457 M24097 AK130592 AK301283 AK304527 X83394 AK024836 BC041078	68288	-	TSC_hg19_v1_chr6_-_31239888 NM_001243042 NM_002117	68502	-	TSC_hg19_v1_chr6_-_31324569 U18661 M27540 AY221104 U74386 U28759 AF081275 AJ002675 AJ002676 AJ002677 AJ003063 AJ223602 AY040668 AY569160 FN662479 HM989017 HM989018 L42545 L47338 L47986 L48400 L49343 L63544 L76252 L76931 L76933 L76934 L76935 L77114 L79935 L79936 L79937 U06697 U16298 U18789 U32678 U34619 U34810 U43337 Y07710 AJ276427 M62852 M83191 M83193 M83194 M83195 U58110	153251	-	AM851126|POU5F1|5460|POU class 5 homeobox 1##AM851121|POU5F1|5460|POU class 5 homeobox 1##AM851123|POU5F1|5460|POU class 5 homeobox 1##AM851125|POU5F1|5460|POU class 5 homeobox 1##FM177952|POU5F1|5460|POU class 5 homeobox 1##FM177953|POU5F1|5460|POU class 5 homeobox 1##FM177954|POU5F1|5460|POU class 5 homeobox 1##FM177955|POU5F1|5460|POU class 5 homeobox 1##FM177956|POU5F1|5460|POU class 5 homeobox 1##FM177959|POU5F1|5460|POU class 5 homeobox 1##FM177960|POU5F1|5460|POU class 5 homeobox 1##FM177961|POU5F1|5460|POU class 5 homeobox 1##FM177962|POU5F1|5460|POU class 5 homeobox 1##FM177963|POU5F1|5460|POU class 5 homeobox 1##FM177965|POU5F1|5460|POU class 5 homeobox 1##FM177968|POU5F1|5460|POU class 5 homeobox 1##GU480808|POU5F1|5460|POU class 5 homeobox 1##GU480809|POU5F1|5460|POU class 5 homeobox 1##GU480810|POU5F1|5460|POU class 5 homeobox 1##GU480811|POU5F1|5460|POU class 5 homeobox 1##GU480812|POU5F1|5460|POU class 5 homeobox 1##GU480813|POU5F1|5460|POU class 5 homeobox 1##GU480815|POU5F1|5460|POU class 5 homeobox 1##GU480816|POU5F1|5460|POU class 5 homeobox 1##GU480817|POU5F1|5460|POU class 5 homeobox 1##GU480818|POU5F1|5460|POU class 5 homeobox 1##GU480819|POU5F1|5460|POU class 5 homeobox 1##GU480820|POU5F1|5460|POU class 5 homeobox 1##GU480821|POU5F1|5460|POU class 5 homeobox 1##GU480822|POU5F1|5460|POU class 5 homeobox 1##GU480823|POU5F1|5460|POU class 5 homeobox 1##GU480824|POU5F1|5460|POU class 5 homeobox 1##GU480825|POU5F1|5460|POU class 5 homeobox 1##GU480826|POU5F1|5460|POU class 5 homeobox 1##GU480827|POU5F1|5460|POU class 5 homeobox 1##GU480828|POU5F1|5460|POU class 5 homeobox 1##GU480829|POU5F1|5460|POU class 5 homeobox 1##GU480830|POU5F1|5460|POU class 5 homeobox 1##GU480886|POU5F1B|5462|POU class 5 homeobox 1B##GU480888|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##GU480891|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##GU480897|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##GU480915|POU5F1P3|642559|POU class 5 homeobox 1 pseudogene 3##HQ122658|POU5F1|5460|POU class 5 homeobox 1##HQ122659|POU5F1|5460|POU class 5 homeobox 1##HQ122660|POU5F1|5460|POU class 5 homeobox 1##HQ122661|POU5F1|5460|POU class 5 homeobox 1##HQ122662|POU5F1|5460|POU class 5 homeobox 1##HQ122663|POU5F1|5460|POU class 5 homeobox 1##HQ122664|POU5F1|5460|POU class 5 homeobox 1##HQ122665|POU5F1|5460|POU class 5 homeobox 1##HQ122666|POU5F1|5460|POU class 5 homeobox 1##HQ122667|POU5F1|5460|POU class 5 homeobox 1##HQ122668|POU5F1|5460|POU class 5 homeobox 1##HQ122669|POU5F1|5460|POU class 5 homeobox 1##HQ122670|POU5F1|5460|POU class 5 homeobox 1##HQ122671|POU5F1|5460|POU class 5 homeobox 1##HQ122672|POU5F1|5460|POU class 5 homeobox 1##HQ122673|POU5F1|5460|POU class 5 homeobox 1##HQ122674|POU5F1|5460|POU class 5 homeobox 1##HQ122675|POU5F1|5460|POU class 5 homeobox 1##HQ122860|POU5F1P4|645682|POU class 5 homeobox 1 pseudogene 4##HQ258221|POU5F1|5460|POU class 5 homeobox 1##HQ258573|POU5F1|5460|POU class 5 homeobox 1##BC069246|POU5F1|5460|POU class 5 homeobox 1##Z11898|POU5F1|5460|POU class 5 homeobox 1##AM851115|POU5F1|5460|POU class 5 homeobox 1##AM851118|POU5F1|5460|POU class 5 homeobox 1##AM851116|POU5F1|5460|POU class 5 homeobox 1##AM851117|POU5F1|5460|POU class 5 homeobox 1##AM851119|POU5F1|5460|POU class 5 homeobox 1##AM851120|POU5F1|5460|POU class 5 homeobox 1##BC117435|POU5F1|5460|POU class 5 homeobox 1##BC117437|POU5F1|5460|POU class 5 homeobox 1##NM_002701|POU5F1|5460|POU class 5 homeobox 1##DQ486515|POU5F1|5460|POU class 5 homeobox 1##DQ486516|POU5F1|5460|POU class 5 homeobox 1##NM_001173531|POU5F1|5460|POU class 5 homeobox 1##NM_203289|POU5F1|5460|POU class 5 homeobox 1##S53374|TCF19|6941|transcription factor 19##M28207|HLA-C|3107|major histocompatibility complex, class I, C##M24096|HLA-C|3107|major histocompatibility complex, class I, C##M21963|HLA-C|3107|major histocompatibility complex, class I, C##U07230|HLA-C|3107|major histocompatibility complex, class I, C##U74387|HLA-B|3106|major histocompatibility complex, class I, B##AJ005199|HLA-C|3107|major histocompatibility complex, class I, C##AJ440716|HLA-C|3107|major histocompatibility complex, class I, C##AJ537578|HLA-C|3107|major histocompatibility complex, class I, C##D83741|HLA-C|3107|major histocompatibility complex, class I, C##M11886|HLA-C|3107|major histocompatibility complex, class I, C##M24031|HLA-C|3107|major histocompatibility complex, class I, C##M28206|HLA-C|3107|major histocompatibility complex, class I, C##M26712|HLA-C|3107|major histocompatibility complex, class I, C##BC007814|HLA-C|3107|major histocompatibility complex, class I, C##BC010542|HLA-C|3107|major histocompatibility complex, class I, C##AF168611|HLA-C|3107|major histocompatibility complex, class I, C##AF196489|HLA-C|3107|major histocompatibility complex, class I, C##AF405691|HLA-C|3107|major histocompatibility complex, class I, C##AJ010748|HLA-C|3107|major histocompatibility complex, class I, C##AJ010749|HLA-C|3107|major histocompatibility complex, class I, C##AM237285|HLA-C|3107|major histocompatibility complex, class I, C##AY732487|HLA-C|3107|major histocompatibility complex, class I, C##D38526|HLA-C|3107|major histocompatibility complex, class I, C##D49552|HLA-C|3107|major histocompatibility complex, class I, C##D49819|HLA-C|3107|major histocompatibility complex, class I, C##D50852|HLA-C|3107|major histocompatibility complex, class I, C##D50853|HLA-C|3107|major histocompatibility complex, class I, C##D50854|HLA-C|3107|major histocompatibility complex, class I, C##D64145|HLA-C|3107|major histocompatibility complex, class I, C##D64146|HLA-C|3107|major histocompatibility complex, class I, C##D64147|HLA-C|3107|major histocompatibility complex, class I, C##D64148|HLA-C|3107|major histocompatibility complex, class I, C##D64150|HLA-C|3107|major histocompatibility complex, class I, C##D64151|HLA-C|3107|major histocompatibility complex, class I, C##D64152|HLA-C|3107|major histocompatibility complex, class I, C##D83029|HLA-C|3107|major histocompatibility complex, class I, C##D83030|HLA-C|3107|major histocompatibility complex, class I, C##DQ891896|HLA-C|3107|major histocompatibility complex, class I, C##DQ895082|HLA-C|3107|major histocompatibility complex, class I, C##L38251|HLA-C|3107|major histocompatibility complex, class I, C##M26429|HLA-C|3107|major histocompatibility complex, class I, C##M26430|HLA-C|3107|major histocompatibility complex, class I, C##M84171|HLA-C|3107|major histocompatibility complex, class I, C##M84173|HLA-C|3107|major histocompatibility complex, class I, C##M84174|HLA-C|3107|major histocompatibility complex, class I, C##M84386|HLA-C|3107|major histocompatibility complex, class I, C##M99389|HLA-C|3107|major histocompatibility complex, class I, C##M99390|HLA-C|3107|major histocompatibility complex, class I, C##U06695|HLA-C|3107|major histocompatibility complex, class I, C##U06696|HLA-C|3107|major histocompatibility complex, class I, C##U09853|HLA-C|3107|major histocompatibility complex, class I, C##U41386|HLA-C|3107|major histocompatibility complex, class I, C##U41420|HLA-C|3107|major histocompatibility complex, class I, C##U57028|HLA-C|3107|major histocompatibility complex, class I, C##U62824|HLA-C|3107|major histocompatibility complex, class I, C##X76189|HLA-C|3107|major histocompatibility complex, class I, C##X82122|HLA-C|3107|major histocompatibility complex, class I, C##X83401|HLA-B|3106|major histocompatibility complex, class I, B##X97321|HLA-C|3107|major histocompatibility complex, class I, C##X98742|HLA-C|3107|major histocompatibility complex, class I, C##Y10520|HLA-C|3107|major histocompatibility complex, class I, C##Y11843|HLA-C|3107|major histocompatibility complex, class I, C##Z15144|HLA-C|3107|major histocompatibility complex, class I, C##Z33459|HLA-C|3107|major histocompatibility complex, class I, C##Z46809|HLA-C|3107|major histocompatibility complex, class I, C##Z46810|HLA-C|3107|major histocompatibility complex, class I, C##Z83247|HLA-C|3107|major histocompatibility complex, class I, C##M28160|HLA-C|3107|major histocompatibility complex, class I, C##X58536|HLA-C|3107|major histocompatibility complex, class I, C##BC002463|HLA-C|3107|major histocompatibility complex, class I, C##X70856|HLA-C|3107|major histocompatibility complex, class I, C##X70857|HLA-C|3107|major histocompatibility complex, class I, C##BC004489|HLA-C|3107|major histocompatibility complex, class I, C##BC033293|HLA-C|3107|major histocompatibility complex, class I, C##BC008457|HLA-C|3107|major histocompatibility complex, class I, C##M24097|HLA-C|3107|major histocompatibility complex, class I, C##AK130592|HLA-C|3107|major histocompatibility complex, class I, C##AK301283|HLA-C|3107|major histocompatibility complex, class I, C##AK304527|HLA-C|3107|major histocompatibility complex, class I, C##X83394|HLA-C|3107|major histocompatibility complex, class I, C##AK024836|HLA-C|3107|major histocompatibility complex, class I, C##BC041078|HLA-C|3107|major histocompatibility complex, class I, C##NM_001243042|HLA-C|3107|major histocompatibility complex, class I, C##NM_002117|HLA-C|3107|major histocompatibility complex, class I, C##U18661|HLA-B|3106|major histocompatibility complex, class I, B##M27540|HLA-B|3106|major histocompatibility complex, class I, B##AY221104|HLA-B|3106|major histocompatibility complex, class I, B##U74386|HLA-B|3106|major histocompatibility complex, class I, B##U28759|HLA-B|3106|major histocompatibility complex, class I, B##AJ002675|HLA-B|3106|major histocompatibility complex, class I, B##AJ002676|HLA-B|3106|major histocompatibility complex, class I, B##AJ002677|HLA-B|3106|major histocompatibility complex, class I, B##AJ003063|HLA-B|3106|major histocompatibility complex, class I, B##AJ223602|HLA-B|3106|major histocompatibility complex, class I, B##AY040668|HLA-B|3106|major histocompatibility complex, class I, B##AY569160|HLA-B|3106|major histocompatibility complex, class I, B##HM989017|HLA-B|3106|major histocompatibility complex, class I, B##L42545|HLA-B|3106|major histocompatibility complex, class I, B##L47338|HLA-B|3106|major histocompatibility complex, class I, B##L47986|HLA-B|3106|major histocompatibility complex, class I, B##L48400|HLA-B|3106|major histocompatibility complex, class I, B##L49343|HLA-B|3106|major histocompatibility complex, class I, B##L63544|HLA-B|3106|major histocompatibility complex, class I, B##L76252|HLA-B|3106|major histocompatibility complex, class I, B##L76933|HLA-B|3106|major histocompatibility complex, class I, B##L76935|HLA-B|3106|major histocompatibility complex, class I, B##L77114|HLA-C|3107|major histocompatibility complex, class I, C##L79935|HLA-B|3106|major histocompatibility complex, class I, B##L79936|HLA-B|3106|major histocompatibility complex, class I, B##L79937|HLA-B|3106|major histocompatibility complex, class I, B##U06697|HLA-B|3106|major histocompatibility complex, class I, B##U16298|HLA-B|3106|major histocompatibility complex, class I, B##U32678|HLA-B|3106|major histocompatibility complex, class I, B##U34619|HLA-B|3106|major histocompatibility complex, class I, B##U34810|HLA-B|3106|major histocompatibility complex, class I, B##Y07710|HLA-B|3106|major histocompatibility complex, class I, B##AJ276427|HLA-B|3106|major histocompatibility complex, class I, B##M83191|HLA-B|3106|major histocompatibility complex, class I, B##M83193|HLA-B|3106|major histocompatibility complex, class I, B##M83194|HLA-B|3106|major histocompatibility complex, class I, B##M83195|HLA-B|3106|major histocompatibility complex, class I, B##U58110|HLA-B|3106|major histocompatibility complex, class I, B	0.0	0.0	
chr7	21417411	21417537	reg1015126.p1	4.058	+	TSC_hg19_v1_chr7_-_20826527 AK056857 AK307969 AY167047 BC038669 AK290465 NM_182700 NM_198956	-590940	-	TSC_hg19_v1_chr7_-_20826429 AK299947	-591046	-	TSC_hg19_v1_chr7_-_20825382 AB464710	-592092	-	TSC_hg19_v1_chr7_+_21467717 AK289728 AK296749 NM_003112 X68561 BC109300 BC109301	50345	+	AB591008 TSC_hg19_v1_chr7_+_21468356	50850	+	AJ320497 NM_003777	165358	+	AK056857|SP8|221833|Sp8 transcription factor##AK307969|SP8|221833|Sp8 transcription factor##AY167047|SP8|221833|Sp8 transcription factor##BC038669|SP8|221833|Sp8 transcription factor##AK290465|SP8|221833|Sp8 transcription factor##NM_182700|SP8|221833|Sp8 transcription factor##NM_198956|SP8|221833|Sp8 transcription factor##AK299947|SP8|221833|Sp8 transcription factor##AK289728|SP4|6671|Sp4 transcription factor##AK296749|SP4|6671|Sp4 transcription factor##NM_003112|SP4|6671|Sp4 transcription factor##X68561|SP4|6671|Sp4 transcription factor##BC109300|SP4|6671|Sp4 transcription factor##BC109301|SP4|6671|Sp4 transcription factor##AJ320497|DNAH11|8701|dynein, axonemal, heavy chain 11##NM_003777|DNAH11|8701|dynein, axonemal, heavy chain 11	0.0	0.0	
chr19	17178391	17178457	reg1010601.p2	4.057	+	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-40884	-	AK075099 TSC_hg19_v1_chr19_-_17014494	-163971	-	AK092632 TSC_hg19_v1_chr19_-_17007756 AK124052	-170676	-	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	7897	-	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	8169	+	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	147748	+	AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK075099|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK092632|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AK124052|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	0.0	0.0	
chr2	109830732	109830882	reg1010882.p1	4.057	+	NM_001099289 DQ307286	-84744	+	TSC_hg19_v1_chr2_-_109605671 AK313781 CR749352 AF130988 NM_022336	-225060	-	TSC_hg19_v1_chr2_-_109605623 AK296936	-225188	-	CU676536 TSC_hg19_v1_chr2_-_110371486 BC020502 AK295560 AK292038 AK092033 AF146760	540674	-	AK294427 BC050345 TSC_hg19_v1_chr2_-_110371735 AK021681 NM_144710 NM_178584	540918	-	BC036652 TSC_hg19_v1_chr2_+_110371940 BC066772 NM_023016 AK025523	541138	+	NM_001099289|SH3RF3|344558|SH3 domain containing ring finger 3##DQ307286|SH3RF3|344558|SH3 domain containing ring finger 3##AK313781|EDAR|10913|ectodysplasin A receptor##CR749352|EDAR|10913|ectodysplasin A receptor##AF130988|EDAR|10913|ectodysplasin A receptor##NM_022336|EDAR|10913|ectodysplasin A receptor##AK296936|EDAR|10913|ectodysplasin A receptor##BC020502|SEPT10|151011|septin 10##AK295560|SEPT10|151011|septin 10##AK292038|SEPT10|151011|septin 10##AK092033|SEPT10|151011|septin 10##AF146760|SEPT10|151011|septin 10##AK294427|SEPT10|151011|septin 10##BC050345|SEPT10|151011|septin 10##AK021681|SEPT10|151011|septin 10##NM_144710|SEPT10|151011|septin 10##NM_178584|SEPT10|151011|septin 10##BC036652|ANKRD57|65124|ankyrin repeat domain 57##BC066772|ANKRD57|65124|ankyrin repeat domain 57##NM_023016|ANKRD57|65124|ankyrin repeat domain 57##AK025523|ANKRD57|65124|ankyrin repeat domain 57	0.0	0.0	
chr2	216676137	216676222	reg1001746.p1	4.057	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-375397	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-375659	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-386207	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	202157	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	270365	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	270513	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.265288	0.0	denovo_WM_7:-52:0.213
chr9	37211441	37211618	reg1015279.p2	4.057	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-90946	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-91021	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-91043	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	211177	+	BC010007 TSC_hg19_v1_chr9_-_37465267	253731	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	253866	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.459813	0.0	denovo_WM_7:-18:0.277
chr1	114473232	114473345	reg1017682.p1	4.056	+	AB089957 TSC_hg19_v1_chr1_+_114472488	-820	+	BC033012 NM_152696 NM_198268 AK122662	-1292	+	TSC_hg19_v1_chr1_+_114448038 AF306691 BC029687	-25244	+	BC028408 NM_198269	20478	+	BC036057 NM_181358	23210	+	AY358954 NM_020190 AY464015 AK092766 AX747716 AK075369 TSC_hg19_v1_chr1_+_114522099 AK297902 AF201945 AK223221 BC009920 AK222471 AK075479 AK075353 AK075544 AB590196 DQ892781 DQ896028 CU679529	48795	+	AB089957|HIPK1|204851|homeodomain interacting protein kinase 1##BC033012|HIPK1|204851|homeodomain interacting protein kinase 1##NM_152696|HIPK1|204851|homeodomain interacting protein kinase 1##NM_198268|HIPK1|204851|homeodomain interacting protein kinase 1##AK122662|HIPK1|204851|homeodomain interacting protein kinase 1##AF306691|DCLRE1B|64858|DNA cross-link repair 1B##BC029687|DCLRE1B|64858|DNA cross-link repair 1B##BC028408|HIPK1|204851|homeodomain interacting protein kinase 1##NM_198269|HIPK1|204851|homeodomain interacting protein kinase 1##BC036057|HIPK1|204851|homeodomain interacting protein kinase 1##NM_181358|HIPK1|204851|homeodomain interacting protein kinase 1##AY358954|OLFML3|56944|olfactomedin-like 3##NM_020190|OLFML3|56944|olfactomedin-like 3##AY464015|OLFML3|56944|olfactomedin-like 3##AK092766|OLFML3|56944|olfactomedin-like 3##AK075369|OLFML3|56944|olfactomedin-like 3##AK297902|OLFML3|56944|olfactomedin-like 3##AF201945|OLFML3|56944|olfactomedin-like 3##AK223221|OLFML3|56944|olfactomedin-like 3##BC009920|OLFML3|56944|olfactomedin-like 3##AK222471|OLFML3|56944|olfactomedin-like 3##AK075479|OLFML3|56944|olfactomedin-like 3##AK075353|OLFML3|56944|olfactomedin-like 3##AK075544|OLFML3|56944|olfactomedin-like 3##DQ892781|OLFML3|56944|olfactomedin-like 3##DQ896028|OLFML3|56944|olfactomedin-like 3	0.179701	0.0	
chr1	23866579	23866669	reg1008137.p2	4.056	+	L22846 NM_004091	-8913	-	BT019523 AB463593 BC053676 AK313939 TSC_hg19_v1_chr1_-_23857464	-9249	-	TSC_hg19_v1_chr1_-_23810732 NM_001143778 NM_017707	-55887	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	19360	-	NM_002167 X69111	19660	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	151656	+	L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##BT019523|E2F2|1870|E2F transcription factor 2##BC053676|E2F2|1870|E2F transcription factor 2##AK313939|E2F2|1870|E2F transcription factor 2##NM_001143778|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##NM_017707|ASAP3|55616|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11	0.0	0.0	
chr13	22001987	22002090	reg1013114.p1	4.056	+	TSC_hg19_v1_chr13_+_21872311 AK093279	-129755	+	TSC_hg19_v1_chr13_+_21750834 BC068492 BC023616 BC000002	-251238	+	CU690596 TSC_hg19_v1_chr13_-_21750699 AF361358 AK090584 AK314864 AX746521 BC013418 AK307976 BC048988 NM_001166017 NM_145061	-251350	-	CU686599 TSC_hg19_v1_chr13_-_22033417 BC110517 AK295804 BC050367 AK299354	31352	-	TSC_hg19_v1_chr13_-_22033486 AX721051	31444	-	TSC_hg19_v1_chr13_-_22033510 BC067898 NM_153251 BC034944	31469	-	AK093279|MIPEPP3|650794|mitochondrial intermediate peptidase pseudogene 3##BC068492|MRP63|78988|mitochondrial ribosomal protein 63##BC023616|MRP63|78988|mitochondrial ribosomal protein 63##BC000002|MRP63|78988|mitochondrial ribosomal protein 63##AF361358|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK090584|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK314864|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC013418|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK307976|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC048988|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_001166017|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_145061|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC110517|ZDHHC20|253832|zinc finger, DHHC-type containing 20##AK295804|ZDHHC20|253832|zinc finger, DHHC-type containing 20##BC050367|ZDHHC20|253832|zinc finger, DHHC-type containing 20##AK299354|ZDHHC20|253832|zinc finger, DHHC-type containing 20##BC067898|ZDHHC20|253832|zinc finger, DHHC-type containing 20##NM_153251|ZDHHC20|253832|zinc finger, DHHC-type containing 20##BC034944|ZDHHC20|253832|zinc finger, DHHC-type containing 20	0.997768	0.0	
chr14	55913033	55913168	reg1010636.p2	4.056	+	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	-5803	-	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	-34544	-	NM_152231	-174229	+	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	133716	-	TSC_hg19_v1_chr14_+_56046963 NM_001079521 NM_001079522 NM_004986 NM_182926 BC066337 D13629 AK302797 BC050555 BC058736 Z22551 AY264265 BC112337	134002	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	165649	+	AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_152231|FBXO34|55030|F-box protein 34##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##NM_001079521|KTN1|3895|kinectin 1 (kinesin receptor)##NM_001079522|KTN1|3895|kinectin 1 (kinesin receptor)##NM_004986|KTN1|3895|kinectin 1 (kinesin receptor)##NM_182926|KTN1|3895|kinectin 1 (kinesin receptor)##BC066337|KTN1|3895|kinectin 1 (kinesin receptor)##D13629|KTN1|3895|kinectin 1 (kinesin receptor)##AK302797|KTN1|3895|kinectin 1 (kinesin receptor)##BC050555|KTN1|3895|kinectin 1 (kinesin receptor)##BC058736|KTN1|3895|kinectin 1 (kinesin receptor)##Z22551|KTN1|3895|kinectin 1 (kinesin receptor)##AY264265|KTN1|3895|kinectin 1 (kinesin receptor)##BC112337|KTN1|3895|kinectin 1 (kinesin receptor)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)	0.440077	0.793736	denovo_WM_7:37:0.333	CTCF.p2:-43:0.794
chr15	50594637	50594736	reg1002120.p1	4.056	+	AK308833 NM_002112	-36525	-	TSC_hg19_v1_chr15_+_50474425 AK290262 NM_001159629 NM_003645 AF096290 AK222859 D88308 AK223145 BC057770 CU691220	-120196	+	TSC_hg19_v1_chr15_-_50411492 BC144298 BC144297 NM_024837	-183220	-	TSC_hg19_v1_chr15_-_50647062 BC068063 BC009935 AK000900	52383	-	TSC_hg19_v1_chr15_+_50647161 BC014238 BC004103	52474	+	TSC_hg19_v1_chr15_-_50647316 BC016910 D13316 BC050702 AK303901	52614	-	AK308833|HDC|3067|histidine decarboxylase##NM_002112|HDC|3067|histidine decarboxylase##AK290262|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_001159629|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##NM_003645|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AF096290|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK222859|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##D88308|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##AK223145|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC057770|SLC27A2|11001|solute carrier family 27 (fatty acid transporter), member 2##BC144298|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC144297|ATP8B4|79895|ATPase, class I, type 8B, member 4##NM_024837|ATP8B4|79895|ATPase, class I, type 8B, member 4##BC068063|FLJ10038|55056|uncharacterized protein FLJ10038##BC009935|FLJ10038|55056|uncharacterized protein FLJ10038##AK000900|FLJ10038|55056|uncharacterized protein FLJ10038##BC014238|LOC100129387|100129387|uncharacterized LOC100129387##BC004103|LOC100129387|100129387|uncharacterized LOC100129387##BC016910|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##D13316|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##BC050702|GABPB1|2553|GA binding protein transcription factor, beta subunit 1##AK303901|GABPB1|2553|GA binding protein transcription factor, beta subunit 1	0.0	0.0	
chr16	8985541	8985717	reg1010183.p2	4.056	+	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	-22769	-	NM_001042476 BC001333	-23377	-	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-93931	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	71666	-	TSC_hg19_v1_chr16_+_9185545 NM_014117	199911	+	TSC_hg19_v1_chr16_+_9185577 BC113570	199974	+	BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##BC113570|C16orf72|29035|chromosome 16 open reading frame 72	0.0	0.0	
chr19	48968517	48968665	reg1014989.p1	4.056	+	BC035918 NM_170720	-4086	+	AF081466 NM_013348	-9826	+	TSC_hg19_v1_chr19_+_48949248 AF337808 BC002440 EF011614 AL713729 CU677962 DQ892630 DQ895868 AB075822 BC036281 BC047351	-19332	+	NM_004228 NM_017457 TSC_hg19_v1_chr19_+_48972572	3927	+	TSC_hg19_v1_chr19_+_48972625 AB209573 BC038713 AK292405 U70728 AK299590 BC004361 AB528907 DQ892565 DQ896856 X99753	4078	+	AB384647 TSC_hg19_v1_chr19_-_49014849	46249	-	BC035918|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_170720|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AF081466|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##NM_013348|KCNJ14|3770|potassium inwardly-rectifying channel, subfamily J, member 14##AF337808|GRWD1|83743|glutamate-rich WD repeat containing 1##BC002440|GRWD1|83743|glutamate-rich WD repeat containing 1##EF011614|GRWD1|83743|glutamate-rich WD repeat containing 1##AL713729|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ892630|GRWD1|83743|glutamate-rich WD repeat containing 1##DQ895868|GRWD1|83743|glutamate-rich WD repeat containing 1##BC036281|GRWD1|83743|glutamate-rich WD repeat containing 1##BC047351|GRWD1|83743|glutamate-rich WD repeat containing 1##NM_004228|CYTH2|9266|cytohesin 2##NM_017457|CYTH2|9266|cytohesin 2##AB209573|CYTH2|9266|cytohesin 2##BC038713|CYTH2|9266|cytohesin 2##AK292405|CYTH2|9266|cytohesin 2##U70728|CYTH2|9266|cytohesin 2##AK299590|CYTH2|9266|cytohesin 2##BC004361|CYTH2|9266|cytohesin 2##DQ892565|CYTH2|9266|cytohesin 2##DQ896856|CYTH2|9266|cytohesin 2##X99753|CYTH2|9266|cytohesin 2	0.999767	0.0	denovo_WM_7:-3:0.829
chr2	208541807	208541934	reg1014587.p2	4.056	+	TSC_hg19_v1_chr2_-_208490039 BC009462 AF455817	-51787	-	NM_001127395 TSC_hg19_v1_chr2_-_208489987	-51881	-	AK093812 AX748320 BC033720 NM_145280	-52175	-	TSC_hg19_v1_chr2_+_208576363 AK097751 NM_001142300 NM_152523	34431	+	TSC_hg19_v1_chr2_+_208576365 BC047293	34525	+	TSC_hg19_v1_chr2_+_208576466 BC067253	34630	+	BC009462|METTL21A|151194|methyltransferase like 21A##AF455817|METTL21A|151194|methyltransferase like 21A##NM_001127395|METTL21A|151194|methyltransferase like 21A##AK093812|METTL21A|151194|methyltransferase like 21A##BC033720|METTL21A|151194|methyltransferase like 21A##NM_145280|METTL21A|151194|methyltransferase like 21A##AK097751|CCNYL1|151195|cyclin Y-like 1##NM_001142300|CCNYL1|151195|cyclin Y-like 1##NM_152523|CCNYL1|151195|cyclin Y-like 1##BC047293|CCNYL1|151195|cyclin Y-like 1##BC067253|CCNYL1|151195|cyclin Y-like 1	0.104937	0.0	
chr2	25633665	25633845	reg1011915.p1	4.056	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-68293	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-68392	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-68427	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	262646	-	AB385496 TSC_hg19_v1_chr2_-_26101159	467374	-	TSC_hg19_v1_chr2_-_26101174 AB084279	467418	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	1.021752	0.0	denovo_WM_7:56:0.225	denovo_WM_7:57:0.225	denovo_WM_7:58:0.225	denovo_WM_7:59:0.225
chr5	156860847	156860980	reg1011535.p1	4.056	+	TSC_hg19_v1_chr5_+_156820161 AK172724	-40725	+	AK289701 BC022570 NM_001001343	-88213	-	BC011762 BC021008 NM_014376	-164557	+	AK296972 NM_001099287 NM_001172292	26113	+	TSC_hg19_v1_chr5_+_156887210 AK026158 AK308830 AK309242	26357	+	AB462931 TSC_hg19_v1_chr5_-_157002728	141803	-	AK172724|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK289701|FNDC9|408263|fibronectin type III domain containing 9##BC022570|FNDC9|408263|fibronectin type III domain containing 9##NM_001001343|FNDC9|408263|fibronectin type III domain containing 9##BC011762|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##BC021008|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##NM_014376|CYFIP2|26999|cytoplasmic FMR1 interacting protein 2##AK296972|NIPAL4|348938|NIPA-like domain containing 4##NM_001099287|NIPAL4|348938|NIPA-like domain containing 4##NM_001172292|NIPAL4|348938|NIPA-like domain containing 4##AK026158|NIPAL4|348938|NIPA-like domain containing 4##AK308830|NIPAL4|348938|NIPA-like domain containing 4##AK309242|NIPAL4|348938|NIPA-like domain containing 4	1.312741	0.0	
chr6	51325006	51325159	reg1012749.p1	4.056	+	NM_003221 BC037225 AK291172 AK313749 AB528472 X95694 DQ891443 DQ894621	-538547	+	AY028376 NM_172238	-643826	+	DQ012016 NM_001037498	-1308719	-	AF480064 TSC_hg19_v1_chr6_-_51952394 AY092083 AY074797 NM_138694 NM_170724	627313	-	NM_002190 U32659 BC066251 BC066252 BC066253 BC067503 BC067504 BC067505 Z58820 AB590712 CU688116	726124	+	AF384857 JF305974 AB590713 BC070124 NM_052872	784179	-	NM_003221|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##BC037225|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK291172|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AK313749|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##X95694|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ891443|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##DQ894621|TFAP2B|7021|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)##AY028376|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##NM_172238|TFAP2D|83741|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)##DQ012016|DEFB112|245915|defensin, beta 112##NM_001037498|DEFB112|245915|defensin, beta 112##AF480064|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY092083|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##AY074797|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_138694|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_170724|PKHD1|5314|polycystic kidney and hepatic disease 1 (autosomal recessive)##NM_002190|IL17A|3605|interleukin 17A##U32659|IL17A|3605|interleukin 17A##BC066251|IL17A|3605|interleukin 17A##BC066252|IL17A|3605|interleukin 17A##BC066253|IL17A|3605|interleukin 17A##BC067503|IL17A|3605|interleukin 17A##BC067504|IL17A|3605|interleukin 17A##BC067505|IL17A|3605|interleukin 17A##Z58820|IL17A|3605|interleukin 17A##AF384857|IL17F|112744|interleukin 17F##JF305974|IL17F|112744|interleukin 17F##BC070124|IL17F|112744|interleukin 17F##NM_052872|IL17F|112744|interleukin 17F	0.067369	0.0	
chr7	66202907	66203020	reg1012072.p1	4.056	+	TSC_hg19_v1_chr7_+_66147121 AK056864	-55823	+	BC042482 TSC_hg19_v1_chr7_+_66093944 AK056631 AK127790	-109021	+	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	-109089	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	2681	+	TSC_hg19_v1_chr7_+_66205692 BC015330	2731	+	TSC_hg19_v1_chr7_+_66205719 AJ250042 AK223329 AK290678	2767	+	AK056864|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC042482|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK056631|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AJ250042|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK223329|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK290678|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1	1.988505	0.0	denovo_WM_7:38:0.950	denovo_WM_7:54:0.984
chr1	16514389	16514513	reg1015280.p2	4.055	+	EU826606 DQ895231 EU176326 TSC_hg19_v1_chr1_-_16482565 M59371 BC037166 AK296788 NM_004431	-31925	-	AB463624 CU691488 AK094085 BC037394 TSC_hg19_v1_chr1_-_16400144 BC016848 NM_182623	-114394	-	AK098217 NM_001165945	-139168	+	BC040640 NM_153213 AK091281 AX746893 AK297707	24683	-	NM_030907	49207	-	TSC_hg19_v1_chr1_-_16678922 AK310671	164467	-	EU826606|EPHA2|1969|EPH receptor A2##DQ895231|EPHA2|1969|EPH receptor A2##EU176326|EPHA2|1969|EPH receptor A2##M59371|EPHA2|1969|EPH receptor A2##BC037166|EPHA2|1969|EPH receptor A2##AK296788|EPHA2|1969|EPH receptor A2##NM_004431|EPHA2|1969|EPH receptor A2##AK094085|FAM131C|348487|family with sequence similarity 131, member C##BC037394|FAM131C|348487|family with sequence similarity 131, member C##BC016848|FAM131C|348487|family with sequence similarity 131, member C##NM_182623|FAM131C|348487|family with sequence similarity 131, member C##AK098217|CLCNKB|1188|chloride channel Kb##NM_001165945|CLCNKB|1188|chloride channel Kb##BC040640|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##NM_153213|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##AK091281|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##AK297707|ARHGEF19|128272|Rho guanine nucleotide exchange factor (GEF) 19##NM_030907|RSG1|79363|REM2 and RAB-like small GTPase 1##AK310671|FBXO42|54455|F-box protein 42	0.090631	0.998668	CTCF.p2:-24:0.999
chr19	2052275	2052341	reg1016451.p1	4.055	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-1075	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-6067	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-10258	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	32935	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	43957	-	TSC_hg19_v1_chr19_-_2096297 AL832474	43986	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	0.0	0.0	
chr21	47393662	47393842	reg1004111.p2	4.055	+	AF176329 NM_001130141 NM_020528 BC012061 AK310672	-123864	+	TSC_hg19_v1_chr21_+_47063638 AK310131	-330123	+	TSC_hg19_v1_chr21_-_46962344 U17566 U15939 U19720 BC003068 AK313125 AK307623 NM_001205206 NM_194255	-431420	-	TSC_hg19_v1_chr21_+_47401683 NM_001848 BC052575 AK298968 AK299396 AK307989 BC032821 X15879	7933	+	TSC_hg19_v1_chr21_+_47518062 NM_001849 NM_058174 NM_058175 BC065509	124298	+	AY029208 EU832113 EU832207 TSC_hg19_v1_chr21_+_47531438	137651	+	AF176329|PCBP3|54039|poly(rC) binding protein 3##NM_001130141|PCBP3|54039|poly(rC) binding protein 3##NM_020528|PCBP3|54039|poly(rC) binding protein 3##BC012061|PCBP3|54039|poly(rC) binding protein 3##AK310672|PCBP3|54039|poly(rC) binding protein 3##AK310131|PCBP3|54039|poly(rC) binding protein 3##U17566|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U15939|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##U19720|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##BC003068|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK313125|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##AK307623|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001205206|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_194255|SLC19A1|6573|solute carrier family 19 (folate transporter), member 1##NM_001848|COL6A1|1291|collagen, type VI, alpha 1##BC052575|COL6A1|1291|collagen, type VI, alpha 1##AK298968|COL6A1|1291|collagen, type VI, alpha 1##AK299396|COL6A1|1291|collagen, type VI, alpha 1##AK307989|COL6A1|1291|collagen, type VI, alpha 1##BC032821|COL6A1|1291|collagen, type VI, alpha 1##X15879|COL6A1|1291|collagen, type VI, alpha 1##NM_001849|COL6A2|1292|collagen, type VI, alpha 2##NM_058174|COL6A2|1292|collagen, type VI, alpha 2##NM_058175|COL6A2|1292|collagen, type VI, alpha 2##BC065509|COL6A2|1292|collagen, type VI, alpha 2##AY029208|COL6A2|1292|collagen, type VI, alpha 2##EU832113|COL6A2|1292|collagen, type VI, alpha 2##EU832207|COL6A2|1292|collagen, type VI, alpha 2	0.0	0.0	
chr22	42638249	42638338	reg1016924.p1	4.055	+	AB527391 NM_005650 NM_181492	-26916	-	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-111412	-	AB463001 CU013213 CU013501 M20403 X08006 BC066877 BC067432 TSC_hg19_v1_chr22_-_42526809 BC106757 BC106758 BC126858 CR456430 BC075023 BC075024	-111486	-	BC038245 TSC_hg19_v1_chr22_-_42765218	126909	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	190088	-	BC031838 TSC_hg19_v1_chr22_-_42915796 BC041639 BC042335 AB527998 AK314650	277474	-	NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013213|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013501|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##M20403|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##X08006|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC066877|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC067432|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106757|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106758|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC126858|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CR456430|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075023|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075024|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC031838|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC041639|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##BC042335|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)##AK314650|RRP7A|27341|ribosomal RNA processing 7 homolog A (S. cerevisiae)	1.691235	0.0	denovo_WM_7:-60:0.591	denovo_WM_7:-75:0.224	denovo_WM_7:-76:0.277	denovo_WM_7:-77:0.285
chr6	76931218	76931337	reg1008309.p1	4.055	+	HQ258361 BC117450 BC117452 AF047492 NM_001563 CR749572 DQ426878	-148978	-	TSC_hg19_v1_chr6_+_76458996 AB002387 BC146764	-472268	+	TSC_hg19_v1_chr6_+_76458926 NM_004999 BX647397 BC012598	-472361	+	BC069065 BC096206 BC096207 BC096208 NM_000863 AB464442 M81590	1241872	-	NM_001010844 TSC_hg19_v1_chr6_+_79577263 BC112253 BC112255 AB463803 AK309003	2645978	+	BC064611 TSC_hg19_v1_chr6_-_79675737 AK000712	2744475	-	HQ258361|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117450|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##BC117452|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AF047492|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##NM_001563|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##CR749572|IMPG1|3617|interphotoreceptor matrix proteoglycan 1##AB002387|MYO6|4646|myosin VI##BC146764|MYO6|4646|myosin VI##NM_004999|MYO6|4646|myosin VI##BX647397|MYO6|4646|myosin VI##BC012598|MYO6|4646|myosin VI##BC069065|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096206|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096207|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##BC096208|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_000863|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##M81590|HTR1B|3351|5-hydroxytryptamine (serotonin) receptor 1B##NM_001010844|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112253|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC112255|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##AK309003|IRAK1BP1|134728|interleukin-1 receptor-associated kinase 1 binding protein 1##BC064611|PHIP|55023|pleckstrin homology domain interacting protein##AK000712|PHIP|55023|pleckstrin homology domain interacting protein	0.998812	0.0	
chr1	151042665	151042779	reg1003292.p1	4.054	+	TSC_hg19_v1_chr1_+_151032908 BC019253	-9813	+	AK057755 TSC_hg19_v1_chr1_+_151032886 BC007079 BC008445	-9836	+	TSC_hg19_v1_chr1_+_151032872 BC009624	-9853	+	BC027033 NM_144618 TSC_hg19_v1_chr1_+_151043238 AK092230 AX747418 AK313606 AK301882	462	+	AF339152 AF339153 AF339154 AB022434 AB058772 TSC_hg19_v1_chr1_-_151119105 AK302862 AK311613 NM_001178061 NM_001178062 NM_030913	76325	-	NM_001204848 NM_024575 AF271774 AL833373 AK027120 AK225472 TSC_hg19_v1_chr1_+_151129149 BC063014	86408	+	BC019253|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##AK057755|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC007079|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC008445|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC009624|MLLT11|10962|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11##BC027033|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##NM_144618|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK092230|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK313606|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AK301882|GABPB2|126626|GA binding protein transcription factor, beta subunit 2##AF339152|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339153|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AF339154|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB022434|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AB058772|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK302862|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##AK311613|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178061|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001178062|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_030913|SEMA6C|10500|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C##NM_001204848|TNFAIP8L2-SCNM1|100534012|TNFAIP8L2-SCNM1 readthrough##NM_024575|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AF271774|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AL833373|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK027120|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##AK225472|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2##BC063014|TNFAIP8L2|79626|tumor necrosis factor, alpha-induced protein 8-like 2	0.979779	0.0	denovo_WM_7:-57:0.692
chr11	87928329	87928443	reg1012891.p1	4.054	+	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	-19794	-	AK024853 TSC_hg19_v1_chr11_+_87032449	-895944	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-1179408	+	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	142481	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	142516	-	TSC_hg19_v1_chr11_-_88070905 BX537913 NM_001114173 NM_001814 NM_148170	142545	-	BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AK024853|TMEM135|65084|transmembrane protein 135##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C##BX537913|CTSC|1075|cathepsin C##NM_001114173|CTSC|1075|cathepsin C##NM_001814|CTSC|1075|cathepsin C##NM_148170|CTSC|1075|cathepsin C	0.0	0.0	
chr13	49875411	49875552	reg1009309.p1	4.054	+	NM_001193478 NM_030911 TSC_hg19_v1_chr13_+_49822076 BC022801 BC092434 AK312835 BC032889 BC070238 AK297400 BC009562 AY027525 BC048092 BC125202 BC125203	-53392	+	AB463896 AY603964 NM_001507	-81009	+	TSC_hg19_v1_chr13_+_49684452 AK302415 AJ749707 NM_014923 AB023187 BC107793	-191025	+	NM_030925	100253	-	TSC_hg19_v1_chr13_-_50018201 AY211923 AY288977 BX647518 NM_001079670	142700	-	TSC_hg19_v1_chr13_+_50018457 NM_031915 AK308220 AF334407	142989	+	NM_001193478|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##NM_030911|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC022801|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC092434|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK312835|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC032889|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC070238|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK297400|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC009562|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY027525|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC048092|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125202|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125203|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY603964|MLNR|2862|motilin receptor##NM_001507|MLNR|2862|motilin receptor##AK302415|FNDC3A|22862|fibronectin type III domain containing 3A##AJ749707|FNDC3A|22862|fibronectin type III domain containing 3A##NM_014923|FNDC3A|22862|fibronectin type III domain containing 3A##AB023187|FNDC3A|22862|fibronectin type III domain containing 3A##BC107793|FNDC3A|22862|fibronectin type III domain containing 3A##NM_030925|CAB39L|81617|calcium binding protein 39-like##AY211923|CAB39L|81617|calcium binding protein 39-like##AY288977|CAB39L|81617|calcium binding protein 39-like##BX647518|CAB39L|81617|calcium binding protein 39-like##NM_001079670|CAB39L|81617|calcium binding protein 39-like##NM_031915|SETDB2|83852|SET domain, bifurcated 2##AK308220|SETDB2|83852|SET domain, bifurcated 2##AF334407|SETDB2|83852|SET domain, bifurcated 2	0.0	0.946423	CTCF.p2:-9:0.946
chr17_ctg5_hap1	644113	644278	reg1010729.p1	4.054	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr22	18259853	18259983	reg1013136.p2	4.054	+	TSC_hg19_v1_chr22_-_18257284 BC002483 BC022072 NM_001196 NM_001244569 NM_001244570 NM_197967 EU678293 EU678294 NM_001244567	-2584	-	TSC_hg19_v1_chr22_-_18257223 BC009197 AF087891 AF042083	-2695	-	TSC_hg19_v1_chr22_-_18257211 AK313729 BC033634	-2711	-	TSC_hg19_v1_chr22_-_18484268 AK127487	224310	-	TSC_hg19_v1_chr22_-_18507301 AK295978 AK122725 NM_001122731 NM_001136004 NM_015241	247343	-	TSC_hg19_v1_chr22_+_18560749 AK000065 NM_001199319 NM_017929 AK000702	300770	+	BC022072|BID|637|BH3 interacting domain death agonist##NM_001196|BID|637|BH3 interacting domain death agonist##NM_001244569|BID|637|BH3 interacting domain death agonist##NM_001244570|BID|637|BH3 interacting domain death agonist##NM_197967|BID|637|BH3 interacting domain death agonist##EU678293|BID|637|BH3 interacting domain death agonist##EU678294|BID|637|BH3 interacting domain death agonist##NM_001244567|BID|637|BH3 interacting domain death agonist##BC009197|BID|637|BH3 interacting domain death agonist##AF087891|BID|637|BH3 interacting domain death agonist##AF042083|BID|637|BH3 interacting domain death agonist##AK313729|BID|637|BH3 interacting domain death agonist##BC033634|BID|637|BH3 interacting domain death agonist##AK127487|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK295978|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001122731|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_001136004|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##NM_015241|MICAL3|57553|microtubule associated monoxygenase, calponin and LIM domain containing 3##AK000065|PEX26|55670|peroxisomal biogenesis factor 26##NM_001199319|PEX26|55670|peroxisomal biogenesis factor 26##NM_017929|PEX26|55670|peroxisomal biogenesis factor 26##AK000702|PEX26|55670|peroxisomal biogenesis factor 26	0.0	0.0	
chr2	54621579	54621692	reg1016101.p1	4.054	+	AK097617 NM_001100396 BC126244 BC126246 BC144191 BC144192 BC031669	-63547	+	BC068576 AK097417 NM_001003937	-138260	-	NM_138448 AK307096 BC012290 X84195 TSC_hg19_v1_chr2_+_54342769	-279041	+	TSC_hg19_v1_chr2_+_54683463 NM_003128 AB371586 AB209748	61977	+	TSC_hg19_v1_chr2_+_54684338 BC032061	62732	+	TSC_hg19_v1_chr2_+_54785519 AF327441 NM_178313 BC137282 BC137283	163930	+	AK097617|C2orf73|129852|chromosome 2 open reading frame 73##NM_001100396|C2orf73|129852|chromosome 2 open reading frame 73##BC126244|C2orf73|129852|chromosome 2 open reading frame 73##BC126246|C2orf73|129852|chromosome 2 open reading frame 73##BC144191|C2orf73|129852|chromosome 2 open reading frame 73##BC144192|C2orf73|129852|chromosome 2 open reading frame 73##BC031669|C2orf73|129852|chromosome 2 open reading frame 73##BC068576|TSPYL6|388951|TSPY-like 6##AK097417|TSPYL6|388951|TSPY-like 6##NM_001003937|TSPYL6|388951|TSPY-like 6##NM_138448|ACYP2|98|acylphosphatase 2, muscle type##AK307096|ACYP2|98|acylphosphatase 2, muscle type##BC012290|ACYP2|98|acylphosphatase 2, muscle type##X84195|ACYP2|98|acylphosphatase 2, muscle type##NM_003128|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB371586|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AB209748|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC032061|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##AF327441|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##NM_178313|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137282|SPTBN1|6711|spectrin, beta, non-erythrocytic 1##BC137283|SPTBN1|6711|spectrin, beta, non-erythrocytic 1	0.063194	0.0	
chr8	79769970	79770102	reg1014107.p2	4.054	+	J04156 BC032487 AK226000 BC047698 AK291538 NM_000880 NM_001199886 NM_001199887 NM_001199888	-52388	-	TSC_hg19_v1_chr8_+_79578323 NM_016010 AK024711 AK313723 AF151820 BC009074 BC035905 CU679245	-191716	+	NM_006823 NM_181839 S76965	-341701	+	NM_001199214 NM_007029	753012	+	TSC_hg19_v1_chr8_+_80523304 D50375	753272	+	AK299500 TSC_hg19_v1_chr8_+_80523339	753303	+	J04156|IL7|3574|interleukin 7##BC032487|IL7|3574|interleukin 7##AK226000|IL7|3574|interleukin 7##BC047698|IL7|3574|interleukin 7##AK291538|IL7|3574|interleukin 7##NM_000880|IL7|3574|interleukin 7##NM_001199886|IL7|3574|interleukin 7##NM_001199887|IL7|3574|interleukin 7##NM_001199888|IL7|3574|interleukin 7##NM_016010|FAM164A|51101|family with sequence similarity 164, member A##AK024711|FAM164A|51101|family with sequence similarity 164, member A##AK313723|FAM164A|51101|family with sequence similarity 164, member A##AF151820|FAM164A|51101|family with sequence similarity 164, member A##BC009074|FAM164A|51101|family with sequence similarity 164, member A##BC035905|FAM164A|51101|family with sequence similarity 164, member A##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_001199214|STMN2|11075|stathmin-like 2##NM_007029|STMN2|11075|stathmin-like 2##D50375|STMN2|11075|stathmin-like 2##AK299500|STMN2|11075|stathmin-like 2	0.0	0.0	
chr14	64114455	64114604	reg1013192.p2	4.053	+	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-5967	-	BX248008 NM_001008726	-6405	-	TSC_hg19_v1_chr14_-_64010089 BC056156 BC034994	-104440	-	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	80220	-	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	205166	+	NM_182913 AY061758 AK297874	566348	+	AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##BX248008|WDR89|112840|WD repeat domain 89##NM_001008726|WDR89|112840|WD repeat domain 89##BC056156|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##BC034994|PPP2R5E|5529|protein phosphatase 2, regulatory subunit B', epsilon isoform##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2	0.109901	0.0	
chr18	47955405	47955585	reg1004917.p1	4.053	+	TSC_hg19_v1_chr18_+_47901415 NM_001039535 NM_145060 BC015706 AK313968 AK303464	-54098	+	BX647189 NM_001101654 NM_014593	-140804	-	AB031069 AF149758 AK314886 TSC_hg19_v1_chr18_-_47814205 AK294645	-141288	-	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	131002	+	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	390870	-	BC029860 NM_001127174	396247	-	NM_001039535|SKA1|220134|spindle and kinetochore associated complex subunit 1##NM_145060|SKA1|220134|spindle and kinetochore associated complex subunit 1##BC015706|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK313968|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK303464|SKA1|220134|spindle and kinetochore associated complex subunit 1##BX647189|CXXC1|30827|CXXC finger protein 1##NM_001101654|CXXC1|30827|CXXC finger protein 1##NM_014593|CXXC1|30827|CXXC finger protein 1##AB031069|CXXC1|30827|CXXC finger protein 1##AF149758|CXXC1|30827|CXXC finger protein 1##AK314886|CXXC1|30827|CXXC finger protein 1##AK294645|CXXC1|30827|CXXC finger protein 1##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro##BC029860|MRO|83876|maestro##NM_001127174|MRO|83876|maestro	0.0	0.0	
chr2	219224060	219224201	reg1014518.p1	4.053	+	BC052750 NM_198559 CU690932	-2539	+	TSC_hg19_v1_chr2_+_219188021 AY358753 CU678300 AM393075 AM393168 BC002937 AK309308	-36093	+	TSC_hg19_v1_chr2_+_219187970 NM_022572	-36215	+	AK307954 NM_000578 TSC_hg19_v1_chr2_+_219246995 D50402 AB209650 AK303398 AK310914 AK298667 AK311405 D50403 AK294707 BC041787 L32185 BC071165 BC033754	22779	+	NM_001206878	38930	+	AF229162 NM_021198 NM_182642 TSC_hg19_v1_chr2_+_219264577	40410	+	BC052750|C2orf62|375307|chromosome 2 open reading frame 62##NM_198559|C2orf62|375307|chromosome 2 open reading frame 62##AY358753|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393075|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AM393168|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##BC002937|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK309308|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##NM_022572|PNKD|25953|paroxysmal nonkinesigenic dyskinesia##AK307954|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_000578|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50402|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AB209650|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK303398|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK310914|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK298667|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK311405|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##D50403|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##AK294707|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC041787|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##L32185|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC071165|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##BC033754|SLC11A1|6556|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1##NM_001206878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AF229162|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_021198|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_182642|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	0.997191	0.0	
chr2	45838043	45838192	reg1013824.p1	4.053	+	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-42989	-	BC024033 TSC_hg19_v1_chr2_-_45236562 AF332197 NM_016932	-601567	-	AJ012611 NM_005413 AL162671	-669071	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	290	-	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	40957	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	686474	+	AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##BC024033|SIX2|10736|SIX homeobox 2##AF332197|SIX2|10736|SIX homeobox 2##NM_016932|SIX2|10736|SIX homeobox 2##AJ012611|SIX3|6496|SIX homeobox 3##NM_005413|SIX3|6496|SIX homeobox 3##AL162671|SIX3|6496|SIX homeobox 3##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1	0.999161	0.0	denovo_WM_7:-42:0.433	denovo_WM_7:-43:0.358
chr1	151430426	151430525	reg1015378.p1	4.052	+	TSC_hg19_v1_chr1_-_151414644 AB007930 AB463182 NM_207171 CU691222	-15814	-	TSC_hg19_v1_chr1_+_151372038 AK313825 AK294149 D26600 NM_002796 BC008314 BC010088 BC010098 BC011768 BC012168 BC017451 BC017486 BC000331 AB464086 BT006917 CR456820 CU675936 CU678915 CU679615 CU680252 DQ890748 DQ892020 DQ895212 S71381	-58435	+	AK310044 BC009084 NM_003944 TSC_hg19_v1_chr1_-_151345182 AK303815 AK296661 AK309264 AK315643 AK023875 AK298355 BC032997	-85306	-	TSC_hg19_v1_chr1_-_151431656 BX649163 AB037911 AB075477 AK000199 AK300307 BC057773 BX537561 AK299791 AK302501	1201	-	TSC_hg19_v1_chr1_-_151431954 AJ242979 BX537838 NM_001194937 NM_001194938 NM_015100 NM_145796	1456	-	NM_020770 AF263462 TSC_hg19_v1_chr1_+_151483892 AB037740 AK290007 BC152445 BC146657	53421	+	AB007930|POGZ|23126|pogo transposable element with ZNF domain##NM_207171|POGZ|23126|pogo transposable element with ZNF domain##AK313825|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK294149|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##D26600|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##NM_002796|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC008314|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010088|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010098|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC011768|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC012168|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017451|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017486|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC000331|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BT006917|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##CR456820|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ890748|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ892020|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ895212|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##S71381|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK310044|SELENBP1|8991|selenium binding protein 1##BC009084|SELENBP1|8991|selenium binding protein 1##NM_003944|SELENBP1|8991|selenium binding protein 1##AK303815|SELENBP1|8991|selenium binding protein 1##AK296661|SELENBP1|8991|selenium binding protein 1##AK309264|SELENBP1|8991|selenium binding protein 1##AK315643|SELENBP1|8991|selenium binding protein 1##AK023875|SELENBP1|8991|selenium binding protein 1##AK298355|SELENBP1|8991|selenium binding protein 1##BC032997|SELENBP1|8991|selenium binding protein 1##BX649163|POGZ|23126|pogo transposable element with ZNF domain##AB037911|POGZ|23126|pogo transposable element with ZNF domain##AB075477|POGZ|23126|pogo transposable element with ZNF domain##AK000199|POGZ|23126|pogo transposable element with ZNF domain##AK300307|POGZ|23126|pogo transposable element with ZNF domain##BC057773|POGZ|23126|pogo transposable element with ZNF domain##BX537561|POGZ|23126|pogo transposable element with ZNF domain##AK299791|POGZ|23126|pogo transposable element with ZNF domain##AK302501|POGZ|23126|pogo transposable element with ZNF domain##AJ242979|POGZ|23126|pogo transposable element with ZNF domain##BX537838|POGZ|23126|pogo transposable element with ZNF domain##NM_001194937|POGZ|23126|pogo transposable element with ZNF domain##NM_001194938|POGZ|23126|pogo transposable element with ZNF domain##NM_015100|POGZ|23126|pogo transposable element with ZNF domain##NM_145796|POGZ|23126|pogo transposable element with ZNF domain##NM_020770|CGN|57530|cingulin##AF263462|CGN|57530|cingulin##AB037740|CGN|57530|cingulin##AK290007|CGN|57530|cingulin##BC152445|CGN|57530|cingulin##BC146657|CGN|57530|cingulin	0.998077	0.0	denovo_WM_7:-63:0.457	denovo_WM_7:-64:0.457
chr12	2407001	2407094	reg1012815.p2	4.052	+	AB209016 AJ224873 AY830711 AY830712 AY830713 Z34809 Z34810 Z34811 Z34812 Z34813 Z34814 Z34815 Z34816 Z34817 Z34818 Z34819 Z34820 Z34821 Z34822 Z74996 TSC_hg19_v1_chr12_+_2162753	-244319	+	TSC_hg19_v1_chr12_+_2162452 NM_000719 NM_001129827 NM_001129829 NM_001129830 NM_001129831 NM_001129832 NM_001129833 NM_001129834 NM_001129835 NM_001129836 NM_001129837 NM_001129838 NM_001129839 NM_001129840 NM_001129841 NM_001129842 NM_001129843 NM_001129844 NM_001129846 NM_001167623 NM_001167624 NM_001167625 NM_199460 AK309111 AF465484 AK308652 BC146846	-244553	+	TSC_hg19_v1_chr12_-_2113622 AB463561 AK301109 AK056200 AK299203 BC043437 AY146652 NM_152640	-293376	-	TSC_hg19_v1_chr12_+_2904161 NM_002014 AK313918 BC001786 M88279 BC007924	497107	+	TSC_hg19_v1_chr12_+_2904310 AB385011 CU674888 DQ893668 DQ895800	497255	+	NM_018463 TSC_hg19_v1_chr12_+_2921842 AK130319 AK297189 AK291110 AK300905 AK027483 BC006552 BC013399 DQ892711 DQ895963 CU675449 AY599883	514809	+	AB209016|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AJ224873|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AY830711|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AY830712|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AY830713|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34809|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34810|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34811|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34812|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34813|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34814|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34815|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34816|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34817|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34818|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34819|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34820|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34821|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z34822|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##Z74996|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_000719|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129827|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129829|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129830|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129831|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129832|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129833|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129834|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129835|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129836|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129837|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129838|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129839|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129840|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129841|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129842|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129843|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129844|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001129846|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001167623|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001167624|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_001167625|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##NM_199460|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AK309111|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AF465484|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AK308652|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##BC146846|CACNA1C|775|calcium channel, voltage-dependent, L type, alpha 1C subunit##AK301109|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##AK056200|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##AK299203|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##BC043437|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##AY146652|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##NM_152640|DCP1B|196513|DCP1 decapping enzyme homolog B (S. cerevisiae)##NM_002014|FKBP4|2288|FK506 binding protein 4, 59kDa##AK313918|FKBP4|2288|FK506 binding protein 4, 59kDa##BC001786|FKBP4|2288|FK506 binding protein 4, 59kDa##M88279|FKBP4|2288|FK506 binding protein 4, 59kDa##BC007924|FKBP4|2288|FK506 binding protein 4, 59kDa##DQ893668|FKBP4|2288|FK506 binding protein 4, 59kDa##DQ895800|FKBP4|2288|FK506 binding protein 4, 59kDa##NM_018463|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK130319|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK297189|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK291110|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK300905|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AK027483|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##BC006552|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##BC013399|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ892711|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##DQ895963|ITFG2|55846|integrin alpha FG-GAP repeat containing 2##AY599883|ITFG2|55846|integrin alpha FG-GAP repeat containing 2	1.022976	0.0	denovo_WM_7:-21:0.707
chr6	118807233	118807386	reg1014583.p1	4.052	+	BC028615 NM_001029858 BC114925	-578619	+	TSC_hg19_v1_chr6_+_117996664 AK126335 BC013026	-810643	+	BC110325 TSC_hg19_v1_chr6_+_117996661 BC063794	-810648	+	NM_002667 M63603 AK311799 BC005269	62156	+	BC048977 BC052778 NM_001042475 NM_206921 BC036553	165727	-	BC110835 BC064835 NM_001178035	223924	-	BC028615|SLC35F1|222553|solute carrier family 35, member F1##NM_001029858|SLC35F1|222553|solute carrier family 35, member F1##BC114925|SLC35F1|222553|solute carrier family 35, member F1##AK126335|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC013026|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC110325|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##BC063794|NUS1|116150|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)##NM_002667|PLN|5350|phospholamban##M63603|PLN|5350|phospholamban##AK311799|PLN|5350|phospholamban##BC005269|PLN|5350|phospholamban##BC048977|CEP85L|387119|centrosomal protein 85kDa-like##BC052778|CEP85L|387119|centrosomal protein 85kDa-like##NM_001042475|CEP85L|387119|centrosomal protein 85kDa-like##NM_206921|CEP85L|387119|centrosomal protein 85kDa-like##BC036553|CEP85L|387119|centrosomal protein 85kDa-like##BC110835|CEP85L|387119|centrosomal protein 85kDa-like##BC064835|CEP85L|387119|centrosomal protein 85kDa-like##NM_001178035|CEP85L|387119|centrosomal protein 85kDa-like	0.451293	0.0	denovo_WM_7:30:0.202
chr9	131406150	131406330	reg1001776.p2	4.052	+	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-17497	+	X86901 TSC_hg19_v1_chr9_+_131388179	-18062	+	TSC_hg19_v1_chr9_+_131314868 NM_001130438 NM_001195532 NM_003127 AK294753 AK300386 AK307676 BC034956 AB191262 AB209860 BC051801 J05243 BC053521 U83867	-91450	+	TSC_hg19_v1_chr9_-_131418938 BC001614	12723	-	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	12826	-	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	39764	+	AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##X86901|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001130438|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001195532|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_003127|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK294753|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK300386|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK307676|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC034956|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB191262|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AB209860|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC051801|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##J05243|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC053521|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##U83867|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##BC001614|WDR34|89891|WD repeat domain 34##BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene	0.0	0.0	
chr13	82152014	82152152	reg1006170.p2	4.051	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-1237019	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-1239041	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-2096528	+	TSC_hg19_v1_chr13_-_84456424 BC051738	2304342	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	2304417	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	4221356	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.753247	0.0	denovo_WM_7:-4:0.245
chr16	21629087	21629202	reg1009977.p1	4.051	+	AF151839 TSC_hg19_v1_chr16_+_21611174	-17990	+	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	-18254	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-97392	-	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	34776	-	AJ223183 TSC_hg19_v1_chr16_-_21663991 NM_005849	34832	-	BC129993 NM_144672 BC129992	60691	+	AF151839|METTL9|51108|methyltransferase like 9##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6##AJ223183|IGSF6|10261|immunoglobulin superfamily, member 6##NM_005849|IGSF6|10261|immunoglobulin superfamily, member 6##BC129993|OTOA|146183|otoancorin##NM_144672|OTOA|146183|otoancorin##BC129992|OTOA|146183|otoancorin	1.011574	0.0	denovo_WM_7:-89:0.882
chr16	6691789	6691918	reg1013495.p1	4.051	+	TSC_hg19_v1_chr16_+_6533765 BC033885	-158078	+	AB208826 AF107203 AF448859 NM_001142333 NM_018723 AL713700 TSC_hg19_v1_chr16_+_6069353	-622628	+	CU679605 BC010084 TSC_hg19_v1_chr16_-_5147756 AY037162 NM_201400 NM_201598	-1544085	-	AK001027 NM_001142334	131956	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	690897	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	2023687	+	BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AB208826|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF107203|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF448859|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142333|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_018723|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AL713700|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC010084|FAM86A|196483|family with sequence similarity 86, member A##AY037162|FAM86A|196483|family with sequence similarity 86, member A##NM_201400|FAM86A|196483|family with sequence similarity 86, member A##NM_201598|FAM86A|196483|family with sequence similarity 86, member A##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22	1.911359	0.0	denovo_WM_7:-80:0.602	denovo_WM_7:-95:0.670
chr17	58169340	58169466	reg1016343.p1	4.051	+	TSC_hg19_v1_chr17_-_58156283 AK127708 AK314655 BC119771 BC119813 BX640819 BX640831 CR627418 NM_022070 AF349752	-13049	-	BC006971 TSC_hg19_v1_chr17_-_58042099 AK294806 AK296197 NM_016125	-127296	-	TSC_hg19_v1_chr17_-_58042085 AK295162 BC088365	-127325	-	TSC_hg19_v1_chr17_-_58213006 AK311448	43608	-	TSC_hg19_v1_chr17_+_58227302 BC057792 NM_000717 AK289715 AK298710	57887	+	TSC_hg19_v1_chr17_+_58227333 BC069649 M83670 BC074768 CR541766 CU691238	57959	+	AK127708|HEATR6|63897|HEAT repeat containing 6##AK314655|HEATR6|63897|HEAT repeat containing 6##BC119771|HEATR6|63897|HEAT repeat containing 6##BC119813|HEATR6|63897|HEAT repeat containing 6##BX640819|HEATR6|63897|HEAT repeat containing 6##BX640831|HEATR6|63897|HEAT repeat containing 6##CR627418|HEATR6|63897|HEAT repeat containing 6##NM_022070|HEATR6|63897|HEAT repeat containing 6##AF349752|HEATR6|63897|HEAT repeat containing 6##BC006971|RNFT1|51136|ring finger protein, transmembrane 1##AK294806|RNFT1|51136|ring finger protein, transmembrane 1##AK296197|RNFT1|51136|ring finger protein, transmembrane 1##NM_016125|RNFT1|51136|ring finger protein, transmembrane 1##AK295162|RNFT1|51136|ring finger protein, transmembrane 1##BC088365|RNFT1|51136|ring finger protein, transmembrane 1##BC057792|CA4|762|carbonic anhydrase IV##NM_000717|CA4|762|carbonic anhydrase IV##AK289715|CA4|762|carbonic anhydrase IV##AK298710|CA4|762|carbonic anhydrase IV##BC069649|CA4|762|carbonic anhydrase IV##M83670|CA4|762|carbonic anhydrase IV##BC074768|CA4|762|carbonic anhydrase IV##CR541766|CA4|762|carbonic anhydrase IV	0.0	0.0	
chr18	40530778	40530952	reg1012675.p2	4.051	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-995632	+	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	-995666	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-3150597	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	164704	-	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	326564	-	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	1729249	+	BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK090603|LOC647946|647946|uncharacterized LOC647946##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1	0.992983	0.0	denovo_WM_7:7:0.972
chr3	156846435	156846550	reg1015781.p1	4.051	+	AK094480 AK131473 NM_001004316 BC041967 NM_001193283	-302381	+	BC034397 NM_001184718	-452040	+	AK097785 TSC_hg19_v1_chr3_+_156393472	-453077	+	AF367476 AF367477 TSC_hg19_v1_chr3_-_156877937 BC038394 BC067812 AF180920 AK022974 BC007081	31417	-	NM_020307 AK122738	32022	-	AK312705 NM_002852 BC039733 TSC_hg19_v1_chr3_+_157154638 X63613 BC027887 M31166 X63053 AB590531	308158	+	AK094480|LEKR1|389170|leucine, glutamate and lysine rich 1##AK131473|LEKR1|389170|leucine, glutamate and lysine rich 1##NM_001004316|LEKR1|389170|leucine, glutamate and lysine rich 1##BC041967|LEKR1|389170|leucine, glutamate and lysine rich 1##NM_001193283|LEKR1|389170|leucine, glutamate and lysine rich 1##BC034397|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##NM_001184718|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AK097785|TIPARP|25976|TCDD-inducible poly(ADP-ribose) polymerase##AF367476|CCNL1|57018|cyclin L1##AF367477|CCNL1|57018|cyclin L1##BC038394|CCNL1|57018|cyclin L1##BC067812|CCNL1|57018|cyclin L1##AF180920|CCNL1|57018|cyclin L1##AK022974|CCNL1|57018|cyclin L1##BC007081|CCNL1|57018|cyclin L1##NM_020307|CCNL1|57018|cyclin L1##AK122738|CCNL1|57018|cyclin L1##AK312705|PTX3|5806|pentraxin 3, long##NM_002852|PTX3|5806|pentraxin 3, long##BC039733|PTX3|5806|pentraxin 3, long##X63613|PTX3|5806|pentraxin 3, long##BC027887|PTX3|5806|pentraxin 3, long##M31166|PTX3|5806|pentraxin 3, long##X63053|PTX3|5806|pentraxin 3, long	0.772965	0.0	denovo_WM_7:-16:0.720
chr8	137711985	137712089	reg1016437.p1	4.051	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-1241836	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-1242379	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1986763	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	1797069	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2214207	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3003245	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.080023	0.0	
chr10	71187146	71187326	reg1001715.p2	4.050	+	AK300649 BC033742 AK291996 NM_001057	-10616	-	TSC_hg19_v1_chr10_+_71078629 BC008730 DQ893281 DQ896762 CU679065 AB384968	-108571	+	AK309904 TSC_hg19_v1_chr10_+_71078627	-108609	+	TSC_hg19_v1_chr10_+_71211220 NM_012339 BC003157 BC004161 AF120266	24025	+	TSC_hg19_v1_chr10_+_71211325 AB529132 CU678410	24097	+	BC074938 BC074939 BC117488 BC126468 BC069098 AK313952 NM_020999	145864	-	AK300649|TACR2|6865|tachykinin receptor 2##BC033742|TACR2|6865|tachykinin receptor 2##AK291996|TACR2|6865|tachykinin receptor 2##NM_001057|TACR2|6865|tachykinin receptor 2##BC008730|HK1|3098|hexokinase 1##DQ893281|HK1|3098|hexokinase 1##DQ896762|HK1|3098|hexokinase 1##AK309904|HK1|3098|hexokinase 1##NM_012339|TSPAN15|23555|tetraspanin 15##BC003157|TSPAN15|23555|tetraspanin 15##BC004161|TSPAN15|23555|tetraspanin 15##AF120266|TSPAN15|23555|tetraspanin 15##BC074938|NEUROG3|50674|neurogenin 3##BC074939|NEUROG3|50674|neurogenin 3##BC117488|NEUROG3|50674|neurogenin 3##BC126468|NEUROG3|50674|neurogenin 3##BC069098|NEUROG3|50674|neurogenin 3##AK313952|NEUROG3|50674|neurogenin 3##NM_020999|NEUROG3|50674|neurogenin 3	0.0	0.0	
chr10	77312145	77312284	reg1009682.p1	4.050	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-150649	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-150733	-	TSC_hg19_v1_chr10_-_77161142 CU680472 EU446545 BC013011 BC021165	-151004	-	AF267860 NM_032024	230304	+	AF118141 TSC_hg19_v1_chr10_-_79397246	2085011	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	2085122	-	AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##EU446545|ZNF503|84858|zinc finger protein 503##BC013011|ZNF503|84858|zinc finger protein 503##BC021165|ZNF503|84858|zinc finger protein 503##AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	0.983312	0.0	denovo_WM_7:-37:0.703
chr16	31228870	31228973	reg1012927.p2	4.050	+	AF454669 BC105033 BC105035 NM_152901 AF467809 AF086332 AY163727	-518	-	NM_001008274 BC033211 AK131485	-3544	+	TSC_hg19_v1_chr16_-_31214064 AF384665 AF184073 AF255794 AK314422 AB023416 NM_013258 NM_145182 BC004470	-14771	-	TSC_hg19_v1_chr16_+_31271295 AK057856 NM_000632 NM_001145808 M18044	42372	+	TSC_hg19_v1_chr16_+_31271311 J03925 BC096346 BC096347 BC096348 BC099660	42396	+	TSC_hg19_v1_chr16_+_31271330 AK127637 AB384734	42433	+	AF454669|PYDC1|260434|PYD (pyrin domain) containing 1##BC105033|PYDC1|260434|PYD (pyrin domain) containing 1##BC105035|PYDC1|260434|PYD (pyrin domain) containing 1##NM_152901|PYDC1|260434|PYD (pyrin domain) containing 1##AF467809|PYDC1|260434|PYD (pyrin domain) containing 1##AF086332|PYDC1|260434|PYD (pyrin domain) containing 1##AY163727|PYDC1|260434|PYD (pyrin domain) containing 1##NM_001008274|TRIM72|493829|tripartite motif containing 72##BC033211|TRIM72|493829|tripartite motif containing 72##AK131485|TRIM72|493829|tripartite motif containing 72##AF384665|PYCARD|29108|PYD and CARD domain containing##AF184073|PYCARD|29108|PYD and CARD domain containing##AF255794|PYCARD|29108|PYD and CARD domain containing##AK314422|PYCARD|29108|PYD and CARD domain containing##AB023416|PYCARD|29108|PYD and CARD domain containing##NM_013258|PYCARD|29108|PYD and CARD domain containing##NM_145182|PYCARD|29108|PYD and CARD domain containing##BC004470|PYCARD|29108|PYD and CARD domain containing##AK057856|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##NM_000632|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##NM_001145808|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##M18044|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##J03925|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096346|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096347|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096348|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC099660|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##AK127637|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)	1.989254	0.0	denovo_WM_7:23:0.331	denovo_WM_7:24:0.331	denovo_WM_7:25:0.331
chr1	93002716	93002812	reg1005031.p2	4.050	+	U67369 NM_005263 TSC_hg19_v1_chr1_-_92952458	-50314	-	BC032751 TSC_hg19_v1_chr1_-_92951630 NM_001127216	-51149	-	TSC_hg19_v1_chr1_-_92949508 AK123009	-53232	-	AB449875 AB587441 AF008915 AF042345 NM_005665	255191	-	TSC_hg19_v1_chr1_+_93297596 NM_000969 AK092963 AK095815 AK314720 AB055762	294800	+	TSC_hg19_v1_chr1_+_93297612 BC109370	294841	+	U67369|GFI1|2672|growth factor independent 1 transcription repressor##NM_005263|GFI1|2672|growth factor independent 1 transcription repressor##BC032751|GFI1|2672|growth factor independent 1 transcription repressor##NM_001127216|GFI1|2672|growth factor independent 1 transcription repressor##AK123009|GFI1|2672|growth factor independent 1 transcription repressor##AB449875|EVI5|7813|ecotropic viral integration site 5##AF008915|EVI5|7813|ecotropic viral integration site 5##NM_005665|EVI5|7813|ecotropic viral integration site 5##NM_000969|RPL5|6125|ribosomal protein L5##AK092963|RPL5|6125|ribosomal protein L5##AK095815|RPL5|6125|ribosomal protein L5##AK314720|RPL5|6125|ribosomal protein L5##AB055762|RPL5|6125|ribosomal protein L5##BC109370|RPL5|6125|ribosomal protein L5	0.0	0.0	
chr20	48545257	48545408	reg1012872.p1	4.050	+	TSC_hg19_v1_chr20_-_48532067 AK295536 NM_006038	-13259	-	TSC_hg19_v1_chr20_-_48532056 U28164	-13285	-	BC009481 AB018300 TSC_hg19_v1_chr20_-_48532030 AK023229	-13322	-	TSC_hg19_v1_chr20_+_48552913 AK091976 AK297188 NM_018683	7582	+	TSC_hg19_v1_chr20_+_48552933 AK315638	7599	+	BX640603 TSC_hg19_v1_chr20_+_48552935 BC066919 AF265215 AK301731 BC013695 AB587558 BT006795	7611	+	AK295536|SPATA2|9825|spermatogenesis associated 2##NM_006038|SPATA2|9825|spermatogenesis associated 2##U28164|SPATA2|9825|spermatogenesis associated 2##BC009481|SPATA2|9825|spermatogenesis associated 2##AB018300|SPATA2|9825|spermatogenesis associated 2##AK023229|SPATA2|9825|spermatogenesis associated 2##AK091976|RNF114|55905|ring finger protein 114##AK297188|RNF114|55905|ring finger protein 114##NM_018683|RNF114|55905|ring finger protein 114##AK315638|RNF114|55905|ring finger protein 114##BX640603|RNF114|55905|ring finger protein 114##BC066919|RNF114|55905|ring finger protein 114##AF265215|RNF114|55905|ring finger protein 114##AK301731|RNF114|55905|ring finger protein 114##BC013695|RNF114|55905|ring finger protein 114##BT006795|RNF114|55905|ring finger protein 114	0.999444	0.074911	denovo_WM_7:-92:0.720
chr2	208288597	208288749	reg1014063.p1	4.050	+	BC012919 TSC_hg19_v1_chr2_-_208031680	-257048	-	AB015132 NM_003709 TSC_hg19_v1_chr2_-_208030685 AK314439	-258017	-	BC112076 BC112078 NM_173077 AJ422118	-484373	+	NM_004379 NM_134442 TSC_hg19_v1_chr2_+_208394671 BC095407	105970	+	TSC_hg19_v1_chr2_+_208394709 X55545 M27691	106048	+	TSC_hg19_v1_chr2_+_208394772 BC010636 AK298740	106108	+	BC012919|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AB015132|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##NM_003709|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##AK314439|KLF7|8609|Kruppel-like factor 7 (ubiquitous)##BC112076|CPO|130749|carboxypeptidase O##BC112078|CPO|130749|carboxypeptidase O##NM_173077|CPO|130749|carboxypeptidase O##AJ422118|CPO|130749|carboxypeptidase O##NM_004379|CREB1|1385|cAMP responsive element binding protein 1##NM_134442|CREB1|1385|cAMP responsive element binding protein 1##BC095407|CREB1|1385|cAMP responsive element binding protein 1##X55545|CREB1|1385|cAMP responsive element binding protein 1##M27691|CREB1|1385|cAMP responsive element binding protein 1##BC010636|CREB1|1385|cAMP responsive element binding protein 1##AK298740|CREB1|1385|cAMP responsive element binding protein 1	0.0	0.0	
chr22	39369704	39369884	reg1014258.p1	4.050	+	NM_001193289 NM_145699 U03891 BC126416 BC144146 CR456393 AB528063 CU012950 CU013238 HQ258100	-16184	+	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	-101490	-	TSC_hg19_v1_chr22_-_39268222 BC012111 AK293035	-101573	-	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	8637	+	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	40457	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	40532	+	NM_001193289|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##NM_145699|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##U03891|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC126416|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC144146|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CR456393|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU012950|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU013238|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##HQ258100|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6##BC012111|CBX6|23466|chromobox homolog 6##AK293035|CBX6|23466|chromobox homolog 6##AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C	0.0	0.076633	
chr22	50246924	50247026	reg1015545.p2	4.050	+	TSC_hg19_v1_chr22_-_50221517 AK304776	-25494	-	AK292428 TSC_hg19_v1_chr22_-_50221332 BC030007 BC047508	-25709	-	AF005067 NM_014577	-28524	-	TSC_hg19_v1_chr22_+_50247506 NM_014838	518	+	AB014537 BC167155 TSC_hg19_v1_chr22_+_50247533	557	+	TSC_hg19_v1_chr22_-_50312087 BC001729 AJ290427 AJ303120 BC098562 AF318343	65040	-	AK304776|BRD1|23774|bromodomain containing 1##AK292428|BRD1|23774|bromodomain containing 1##BC030007|BRD1|23774|bromodomain containing 1##BC047508|BRD1|23774|bromodomain containing 1##AF005067|BRD1|23774|bromodomain containing 1##NM_014577|BRD1|23774|bromodomain containing 1##NM_014838|ZBED4|9889|zinc finger, BED-type containing 4##AB014537|ZBED4|9889|zinc finger, BED-type containing 4##BC167155|ZBED4|9889|zinc finger, BED-type containing 4##BC001729|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ290427|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AJ303120|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##BC098562|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)##AF318343|ALG12|79087|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)	0.0	0.0	
chr3	99345208	99345377	reg1013230.p1	4.050	+	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	-724800	-	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	-893705	+	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	-894047	+	AK311449 NM_001850 NM_020351 AF170702 BC013581	12158	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	191453	+	TSC_hg19_v1_chr3_-_99595018 EU531865 EU531866 BC027860 AK225855 AK096195 NM_014890	249699	-	AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26##EU531865|FILIP1L|11259|filamin A interacting protein 1-like##EU531866|FILIP1L|11259|filamin A interacting protein 1-like##BC027860|FILIP1L|11259|filamin A interacting protein 1-like##AK225855|FILIP1L|11259|filamin A interacting protein 1-like##AK096195|FILIP1L|11259|filamin A interacting protein 1-like##NM_014890|FILIP1L|11259|filamin A interacting protein 1-like	0.992182	0.0	
chr4	129031891	129032042	reg1016809.p2	4.050	+	AL832170 NM_018078 NM_032239 NM_178043 TSC_hg19_v1_chr4_+_128982502	-49464	+	TSC_hg19_v1_chr4_+_128982483 BC002840 BC018794 BC110300	-49480	+	TSC_hg19_v1_chr4_+_128982466 AK310421 AK092764 AX747714	-49524	+	TSC_hg19_v1_chr4_-_129208960 DQ893193 DQ893194 DQ893694 DQ896520 DQ896521 DQ896522 DQ896866 AJ002030 AX775755	176978	-	AK091741 AX747155 TSC_hg19_v1_chr4_-_129208964 BC016692	176998	-	TSC_hg19_v1_chr4_-_129208969 BC092478	177025	-	AL832170|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_018078|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_032239|LARP1B|55132|La ribonucleoprotein domain family, member 1B##NM_178043|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC002840|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC018794|LARP1B|55132|La ribonucleoprotein domain family, member 1B##BC110300|LARP1B|55132|La ribonucleoprotein domain family, member 1B##AK310421|LARP1B|55132|La ribonucleoprotein domain family, member 1B##AK092764|LARP1B|55132|La ribonucleoprotein domain family, member 1B##DQ893193|PGRMC2|10424|progesterone receptor membrane component 2##DQ893194|PGRMC2|10424|progesterone receptor membrane component 2##DQ893694|PGRMC2|10424|progesterone receptor membrane component 2##DQ896520|PGRMC2|10424|progesterone receptor membrane component 2##DQ896521|PGRMC2|10424|progesterone receptor membrane component 2##DQ896522|PGRMC2|10424|progesterone receptor membrane component 2##DQ896866|PGRMC2|10424|progesterone receptor membrane component 2##AJ002030|PGRMC2|10424|progesterone receptor membrane component 2##AK091741|PGRMC2|10424|progesterone receptor membrane component 2##BC016692|PGRMC2|10424|progesterone receptor membrane component 2##BC092478|PGRMC2|10424|progesterone receptor membrane component 2	0.0	0.0	
chr4	9996155	9996268	reg1013888.p2	4.050	+	NM_000798	-212954	+	AF529414 NM_001040448	-549952	+	BC100993 AY509884 BC100991 BC100992 NM_001105662 NM_001242326 NM_001242327 NM_001242328 NM_001242329 NM_001242330 NM_001242331 NM_001242332	-631358	+	TSC_hg19_v1_chr4_-_10023140 AF210317 NM_020041 BC110414	26913	-	AK310895 BC018897 NM_001001290 AK096819	45711	-	TSC_hg19_v1_chr4_-_10118286 AB385044 CU674086 CU677992	122076	-	NM_000798|DRD5|1816|dopamine receptor D5##AF529414|DEFB131|644414|defensin, beta 131##NM_001040448|DEFB131|644414|defensin, beta 131##BC100993|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_001242326|LOC728373|728373|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242327|LOC728369|728369|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242328|LOC728379|728379|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242329|USP17L5|728386|ubiquitin specific peptidase 17-like 5##NM_001242330|LOC728393|728393|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242331|LOC728400|728400|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242332|LOC728405|728405|ubiquitin carboxyl-terminal hydrolase 17-like##AF210317|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_020041|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC110414|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK310895|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC018897|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_001001290|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##AK096819|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	0.996725	0.0	denovo_WM_7:-11:0.238	denovo_WM_7:-12:0.238	denovo_WM_7:-13:0.238	denovo_WM_7:-14:0.238
chr5	134185375	134185488	reg1006483.p2	4.050	+	TSC_hg19_v1_chr5_+_134181739 BX648529 AJ437658	-3674	+	TSC_hg19_v1_chr5_+_134181685 NM_001135586 AK094881	-3805	+	BC053677 NM_152409	-4062	+	AK056512 NM_024715	24011	+	TSC_hg19_v1_chr5_+_134210061 BC001615 AK026278 AK225454 AK225462 BC032568 AK307529 BX538131 EU832512 EU832593	24621	+	TSC_hg19_v1_chr5_+_134240808 BC054021 AL136721 NM_032151	55354	+	BX648529|C5orf24|134553|chromosome 5 open reading frame 24##AJ437658|C5orf24|134553|chromosome 5 open reading frame 24##NM_001135586|C5orf24|134553|chromosome 5 open reading frame 24##AK094881|C5orf24|134553|chromosome 5 open reading frame 24##BC053677|C5orf24|134553|chromosome 5 open reading frame 24##NM_152409|C5orf24|134553|chromosome 5 open reading frame 24##AK056512|TXNDC15|79770|thioredoxin domain containing 15##NM_024715|TXNDC15|79770|thioredoxin domain containing 15##BC001615|TXNDC15|79770|thioredoxin domain containing 15##AK026278|TXNDC15|79770|thioredoxin domain containing 15##AK225454|TXNDC15|79770|thioredoxin domain containing 15##AK225462|TXNDC15|79770|thioredoxin domain containing 15##BC032568|TXNDC15|79770|thioredoxin domain containing 15##AK307529|TXNDC15|79770|thioredoxin domain containing 15##BX538131|TXNDC15|79770|thioredoxin domain containing 15##EU832512|TXNDC15|79770|thioredoxin domain containing 15##EU832593|TXNDC15|79770|thioredoxin domain containing 15##BC054021|PCBD2|84105|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2##AL136721|PCBD2|84105|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2##NM_032151|PCBD2|84105|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	1.919016	0.0	denovo_WM_7:-72:0.936
chr15	22899657	22899780	reg1017120.p2	4.049	+	TSC_hg19_v1_chr15_+_22892723 D38549 BC005097	-6981	+	TSC_hg19_v1_chr15_+_22892718 AY763578	-7002	+	AK291604 TSC_hg19_v1_chr15_+_22892705	-7015	+	AK127094 AY763579 NM_001033028	56036	+	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	134616	-	TSC_hg19_v1_chr15_-_23034365 AK300843	134649	-	D38549|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##BC005097|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AY763578|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AK291604|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AK127094|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##AY763579|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##NM_001033028|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2	0.999063	0.0	
chr16	75171871	75171971	reg1015341.p2	4.049	+	AY092767 BC047902 NM_153486 NM_194436 TSC_hg19_v1_chr16_-_75150679	-21242	-	CU690528 TSC_hg19_v1_chr16_-_75150650 BC040279	-21284	-	TSC_hg19_v1_chr16_+_75033257 AK294434 BC007235 AF378524 AL136903	-138661	+	AK296560 TSC_hg19_v1_chr16_+_75182389 AK291372 NM_153688 AK094761 AK308134 BC064604	10513	+	TSC_hg19_v1_chr16_-_75241062 AK124403 AK291822 AK225933 NM_001025200	69161	-	TSC_hg19_v1_chr16_+_75252885 NM_001906	80965	+	AY092767|LDHD|197257|lactate dehydrogenase D##BC047902|LDHD|197257|lactate dehydrogenase D##NM_153486|LDHD|197257|lactate dehydrogenase D##NM_194436|LDHD|197257|lactate dehydrogenase D##BC040279|LDHD|197257|lactate dehydrogenase D##AK294434|ZNRF1|84937|zinc and ring finger 1##BC007235|ZNRF1|84937|zinc and ring finger 1##AF378524|ZNRF1|84937|zinc and ring finger 1##AL136903|ZNRF1|84937|zinc and ring finger 1##AK296560|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK291372|ZFP1|162239|zinc finger protein 1 homolog (mouse)##NM_153688|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK094761|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK308134|ZFP1|162239|zinc finger protein 1 homolog (mouse)##BC064604|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK124403|CTRB1|1504|chymotrypsinogen B1##AK291822|CTRB2|440387|chymotrypsinogen B2##AK225933|CTRB2|440387|chymotrypsinogen B2##NM_001025200|CTRB2|440387|chymotrypsinogen B2##NM_001906|CTRB1|1504|chymotrypsinogen B1	1.986886	0.0	denovo_WM_7:9:0.557	denovo_WM_7:10:0.279	denovo_WM_7:24:0.332	denovo_WM_7:25:0.610
chr6	74172612	74172761	reg1009470.p1	4.049	+	AL833823 TSC_hg19_v1_chr6_+_74171681	-1030	+	NM_001123226 NM_012123 NM_133645 TSC_hg19_v1_chr6_+_74171505 AK225828 AK074625 AF319422 AF469110 AF469111 AY078985 AY078986 BC005808 BC011051 AJ420530 AF132937	-1179	+	TSC_hg19_v1_chr6_-_74162038 NM_138441	-10628	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	56483	-	TSC_hg19_v1_chr6_-_74230163 AY043301	57484	-	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	58060	-	AL833823|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_001123226|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_012123|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_133645|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK225828|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK074625|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF319422|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469110|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469111|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078985|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078986|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC005808|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC011051|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AJ420530|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF132937|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_138441|MB21D1|115004|Mab-21 domain containing 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1	0.978819	0.0	denovo_WM_7:65:0.420	denovo_WM_7:66:0.420
chr9	136933958	136934105	reg1015553.p1	4.049	+	TSC_hg19_v1_chr9_-_136933665 BC032124 AK299519	-405	-	D26362 TSC_hg19_v1_chr9_-_136933121 BC010699 NM_007371	-838	-	BX640754 TSC_hg19_v1_chr9_-_136857447 AB587478 S76992 BC132965 BC132967 NM_001134398 NM_003371	-76585	-	NM_017588 TSC_hg19_v1_chr9_+_137001212	67179	+	TSC_hg19_v1_chr9_+_137001223 BC001635	67194	+	AK000552 TSC_hg19_v1_chr9_+_137001248 AK025810	67218	+	BC032124|BRD3|8019|bromodomain containing 3##AK299519|BRD3|8019|bromodomain containing 3##D26362|BRD3|8019|bromodomain containing 3##BC010699|BRD3|8019|bromodomain containing 3##NM_007371|BRD3|8019|bromodomain containing 3##BX640754|VAV2|7410|vav 2 guanine nucleotide exchange factor##S76992|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132965|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132967|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_001134398|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_003371|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_017588|WDR5|11091|WD repeat domain 5##BC001635|WDR5|11091|WD repeat domain 5##AK000552|WDR5|11091|WD repeat domain 5##AK025810|WDR5|11091|WD repeat domain 5	1.235629	0.0	denovo_WM_7:56:0.220	denovo_WM_7:79:0.245	denovo_WM_7:80:0.245	denovo_WM_7:81:0.245	denovo_WM_7:82:0.248
chr11	116976743	116976880	reg1010638.p1	4.048	+	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	-7778	-	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-268456	-	TSC_hg19_v1_chr11_+_116700622 BC121081 BC134419 NM_000040 BC027977	-276187	+	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	38222	+	TSC_hg19_v1_chr11_+_117049458 AK292501	72746	+	TSC_hg19_v1_chr11_+_117049872 AF151799 BC114522 BC114959 AY358442 NM_001040455 AK292974	73081	+	BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##BC121081|APOC3|345|apolipoprotein C-III##BC134419|APOC3|345|apolipoprotein C-III##NM_000040|APOC3|345|apolipoprotein C-III##BC027977|APOC3|345|apolipoprotein C-III##NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292501|SIDT2|51092|SID1 transmembrane family, member 2##AF151799|SIDT2|51092|SID1 transmembrane family, member 2##BC114522|SIDT2|51092|SID1 transmembrane family, member 2##BC114959|SIDT2|51092|SID1 transmembrane family, member 2##AY358442|SIDT2|51092|SID1 transmembrane family, member 2##NM_001040455|SIDT2|51092|SID1 transmembrane family, member 2##AK292974|SIDT2|51092|SID1 transmembrane family, member 2	0.0	0.015929	
chr11	67769584	67769677	reg1008383.p1	4.048	+	TSC_hg19_v1_chr11_-_67572800 BC063712 BC110365	-196878	-	TSC_hg19_v1_chr11_-_67450557 AB055770	-319084	-	BC007685 NM_001031615	-320946	-	TSC_hg19_v1_chr11_-_67771527 BC101568 BC105104 BC025669 AJ422142 AJ271326 BC092472 BC033623 NM_030930	1937	-	TSC_hg19_v1_chr11_+_67776039 EF411198 NM_001161473	6401	+	TSC_hg19_v1_chr11_+_67777790 NM_000694 NM_001030010 BC002553 AK291505	8160	+	BC063712|FAM86C2P|645332|family with sequence similarity 86, member A pseudogene##BC110365|FAM86C2P|645332|family with sequence similarity 86, member A pseudogene##AB055770|RPL37|6167|ribosomal protein L37##BC007685|ALDH3B2|222|aldehyde dehydrogenase 3 family, member B2##NM_001031615|ALDH3B2|222|aldehyde dehydrogenase 3 family, member B2##BC101568|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC105104|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC025669|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##AJ422142|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##AJ271326|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC092472|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##BC033623|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##NM_030930|UNC93B1|81622|unc-93 homolog B1 (C. elegans)##EF411198|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001161473|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_000694|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##NM_001030010|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##BC002553|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1##AK291505|ALDH3B1|221|aldehyde dehydrogenase 3 family, member B1	0.923335	0.0	denovo_WM_7:-12:0.536	denovo_WM_7:-16:0.332
chr1	174926879	174927050	reg1009838.p2	4.048	+	NM_001035230 BC012094	-82295	+	NM_001243763 AL049701	-83405	+	AB007940 NM_001243765	-157930	+	AK316355 NM_001243764 AK316219 AK298711	6957	+	NM_001007214 AK093425 AX748118	41619	+	TSC_hg19_v1_chr1_+_174968845 NM_014412	41903	+	NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##AB007940|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243765|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001007214|CACYBP|27101|calcyclin binding protein##AK093425|CACYBP|27101|calcyclin binding protein##NM_014412|CACYBP|27101|calcyclin binding protein	0.981486	0.0	
chr17	62097647	62097827	reg1000795.p2	4.048	+	NM_000873 TSC_hg19_v1_chr17_-_62084314	-13432	-	AK021786 AK294360 AK302960 AK304254 NM_001164257 NM_001191029 NM_001191030 NM_001191031 BC030709 BC045676	-21975	+	AY212253 M81758 NM_000334	-47499	-	TSC_hg19_v1_chr17_-_62097985 AK295382 AK309953 NM_001099786 NM_001099787 NM_001099788 NM_001099789	245	-	TSC_hg19_v1_chr17_-_62207401 AB385116 BC130405 BC130407	109661	-	AF059198 AB209869 TSC_hg19_v1_chr17_-_62207502 NM_001433 AK292403	109779	-	NM_000873|ICAM2|3384|intercellular adhesion molecule 2##AK021786|C17orf72|92340|chromosome 17 open reading frame 72##AK294360|C17orf72|92340|chromosome 17 open reading frame 72##AK302960|C17orf72|92340|chromosome 17 open reading frame 72##AK304254|C17orf72|92340|chromosome 17 open reading frame 72##NM_001164257|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191029|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191030|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191031|C17orf72|92340|chromosome 17 open reading frame 72##BC030709|C17orf72|92340|chromosome 17 open reading frame 72##BC045676|C17orf72|92340|chromosome 17 open reading frame 72##AY212253|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##M81758|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##NM_000334|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##AK295382|ICAM2|3384|intercellular adhesion molecule 2##NM_001099786|ICAM2|3384|intercellular adhesion molecule 2##NM_001099787|ICAM2|3384|intercellular adhesion molecule 2##NM_001099788|ICAM2|3384|intercellular adhesion molecule 2##NM_001099789|ICAM2|3384|intercellular adhesion molecule 2##BC130405|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130407|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AF059198|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AB209869|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##NM_001433|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK292403|ERN1|2081|endoplasmic reticulum to nucleus signaling 1	0.0	0.0	
chr21	27455760	27455893	reg1014603.p2	4.048	+	TSC_hg19_v1_chr21_-_27423435 BC018937	-32383	-	TSC_hg19_v1_chr21_-_27372469 X06981 X06982	-83347	-	S41242 S41243 TSC_hg19_v1_chr21_-_27253245	-202603	-	AK295621 NM_001136016 AK311717	56896	-	TSC_hg19_v1_chr21_-_27543029 EU832797 GQ129348 AB384791 AK297229 AK312326	87154	-	TSC_hg19_v1_chr21_-_27543053 X06989	87224	-	X06981|APP|351|amyloid beta (A4) precursor protein##X06982|APP|351|amyloid beta (A4) precursor protein##S41243|APP|351|amyloid beta (A4) precursor protein##AK295621|APP|351|amyloid beta (A4) precursor protein##NM_001136016|APP|351|amyloid beta (A4) precursor protein##AK311717|APP|351|amyloid beta (A4) precursor protein##EU832797|APP|351|amyloid beta (A4) precursor protein##GQ129348|APP|351|amyloid beta (A4) precursor protein##AK297229|APP|351|amyloid beta (A4) precursor protein##AK312326|APP|351|amyloid beta (A4) precursor protein##X06989|APP|351|amyloid beta (A4) precursor protein	0.015238	0.0	
chr22	40978894	40979046	reg1003527.p1	4.048	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-119540	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-212315	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-212329	+	TSC_hg19_v1_chr22_-_41032681 AF368061	53683	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	53734	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	96251	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	0.0	0.0	
chr2	75485898	75485999	reg1013201.p2	4.048	+	AK289765 NM_001058 NM_015727	-59320	-	TSC_hg19_v1_chr2_+_75185771 NM_019896 BC031331	-300163	+	TSC_hg19_v1_chr2_-_75062285 BC013295	-423697	-	BC016157 TSC_hg19_v1_chr2_-_75788066	302099	-	TSC_hg19_v1_chr2_-_75788091 NM_001135032	302142	-	AK023453 NM_032181	310899	-	AK289765|TACR1|6869|tachykinin receptor 1##NM_001058|TACR1|6869|tachykinin receptor 1##NM_015727|TACR1|6869|tachykinin receptor 1##NM_019896|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC031331|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC016157|FAM176A|84141|family with sequence similarity 176, member A##NM_001135032|FAM176A|84141|family with sequence similarity 176, member A##AK023453|FAM176A|84141|family with sequence similarity 176, member A##NM_032181|FAM176A|84141|family with sequence similarity 176, member A	0.992594	0.0	denovo_WM_7:9:0.479	denovo_WM_7:10:0.479
chr6	25298814	25298899	reg1013835.p2	4.048	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	-18962	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	-19198	+	TSC_hg19_v1_chr6_+_25279316 BC040903	-19538	+	TSC_hg19_v1_chr6_-_25571218 Y10205	272402	-	AK289477 NM_006998 BC000336 BC003036 Y16752	353567	+	CU687518 BC062211 NM_170745	427915	-	BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK289477|SCGN|10590|secretagogin, EF-hand calcium binding protein##NM_006998|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC000336|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC003036|SCGN|10590|secretagogin, EF-hand calcium binding protein##Y16752|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC062211|HIST1H2AA|221613|histone cluster 1, H2aa##NM_170745|HIST1H2AA|221613|histone cluster 1, H2aa	0.283494	0.0	
chr7	40174220	40174321	reg1012362.p1	4.048	+	TSC_hg19_v1_chr7_-_40174219 BC026265 NM_138701	-139	-	AJ297709 AJ297710 TSC_hg19_v1_chr7_+_39990171	-184129	+	TSC_hg19_v1_chr7_+_39989958 AK092534 NM_003718 NM_031267	-184311	+	AF397013 TSC_hg19_v1_chr7_+_40174572 AK021870 NM_001193311 NM_001193312 NM_001193313 NM_024728 BC098117 BC098261 BC098310 BC098318	261	+	AK299133 TSC_hg19_v1_chr7_+_40174603 AK296048 AK308764 AK307935 AK298516	339	+	AF218018 AK290584 BC007858 D49743 TSC_hg19_v1_chr7_-_41742684 NM_002192	1568415	-	BC026265|C7orf11|136647|chromosome 7 open reading frame 11##NM_138701|C7orf11|136647|chromosome 7 open reading frame 11##AJ297709|CDK13|8621|cyclin-dependent kinase 13##AJ297710|CDK13|8621|cyclin-dependent kinase 13##AK092534|CDK13|8621|cyclin-dependent kinase 13##NM_003718|CDK13|8621|cyclin-dependent kinase 13##NM_031267|CDK13|8621|cyclin-dependent kinase 13##AF397013|C7orf10|79783|chromosome 7 open reading frame 10##AK021870|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193311|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193312|C7orf10|79783|chromosome 7 open reading frame 10##NM_001193313|C7orf10|79783|chromosome 7 open reading frame 10##NM_024728|C7orf10|79783|chromosome 7 open reading frame 10##BC098117|C7orf10|79783|chromosome 7 open reading frame 10##BC098261|C7orf10|79783|chromosome 7 open reading frame 10##BC098310|C7orf10|79783|chromosome 7 open reading frame 10##BC098318|C7orf10|79783|chromosome 7 open reading frame 10##AK299133|C7orf10|79783|chromosome 7 open reading frame 10##AK296048|C7orf10|79783|chromosome 7 open reading frame 10##AK308764|C7orf10|79783|chromosome 7 open reading frame 10##AK307935|C7orf10|79783|chromosome 7 open reading frame 10##AK298516|C7orf10|79783|chromosome 7 open reading frame 10##AF218018|INHBA|3624|inhibin, beta A##AK290584|INHBA|3624|inhibin, beta A##BC007858|INHBA|3624|inhibin, beta A##D49743|INHBA|3624|inhibin, beta A##NM_002192|INHBA|3624|inhibin, beta A	0.0	0.0	
chr8	86176176	86176281	reg1015456.p1	4.048	+	TSC_hg19_v1_chr8_+_86158033 CU690924	-18179	+	TSC_hg19_v1_chr8_+_86158005 AK095314	-18223	+	TSC_hg19_v1_chr8_+_86157743 BC052602	-18485	+	CU693312 DQ890930 DQ894091 X05014 NM_001164830	77674	-	BC027890 NM_001128829 NM_001128830 NM_001128831 NM_001738	114109	-	AK096880 NM_005181 TSC_hg19_v1_chr8_+_86351055 AK300670 AK300677 AK313254 BC004897 CU678792	174868	+	AK095314|CA13|377677|carbonic anhydrase XIII##BC052602|CA13|377677|carbonic anhydrase XIII##DQ890930|CA1|759|carbonic anhydrase I##DQ894091|CA1|759|carbonic anhydrase I##X05014|CA1|759|carbonic anhydrase I##NM_001164830|CA1|759|carbonic anhydrase I##BC027890|CA1|759|carbonic anhydrase I##NM_001128829|CA1|759|carbonic anhydrase I##NM_001128830|CA1|759|carbonic anhydrase I##NM_001128831|CA1|759|carbonic anhydrase I##NM_001738|CA1|759|carbonic anhydrase I##AK096880|CA3|761|carbonic anhydrase III, muscle specific##NM_005181|CA3|761|carbonic anhydrase III, muscle specific##AK300670|CA3|761|carbonic anhydrase III, muscle specific##AK300677|CA3|761|carbonic anhydrase III, muscle specific##AK313254|CA3|761|carbonic anhydrase III, muscle specific##BC004897|CA3|761|carbonic anhydrase III, muscle specific	0.426351	0.0	denovo_WM_7:-8:0.204
chr10	14784987	14785143	reg1011242.p1	4.047	+	TSC_hg19_v1_chr10_-_14646423 BC072452	-138636	-	TSC_hg19_v1_chr10_-_14646259 BC064407	-138748	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	-412215	-	AK127413 NM_031453	31830	-	TSC_hg19_v1_chr10_-_14880025 BC133042 BC133044 BC144619 NM_001029954 AK301259	94957	-	TSC_hg19_v1_chr10_+_14880314 BC108738 NM_016299 AK225265 AK225651 AK302452 AK000880 BC065281 BC038845	95170	+	BC072452|FAM107B|83641|family with sequence similarity 107, member B##BC064407|FAM107B|83641|family with sequence similarity 107, member B##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##AK127413|FAM107B|83641|family with sequence similarity 107, member B##NM_031453|FAM107B|83641|family with sequence similarity 107, member B##BC133042|CDNF|441549|cerebral dopamine neurotrophic factor##BC133044|CDNF|441549|cerebral dopamine neurotrophic factor##BC144619|CDNF|441549|cerebral dopamine neurotrophic factor##NM_001029954|CDNF|441549|cerebral dopamine neurotrophic factor##BC108738|HSPA14|51182|heat shock 70kDa protein 14##NM_016299|HSPA14|51182|heat shock 70kDa protein 14##AK225265|HSPA14|51182|heat shock 70kDa protein 14##AK225651|HSPA14|51182|heat shock 70kDa protein 14##AK302452|HSPA14|51182|heat shock 70kDa protein 14##AK000880|HSPA14|51182|heat shock 70kDa protein 14##BC065281|HSPA14|51182|heat shock 70kDa protein 14##BC038845|HSPA14|51182|heat shock 70kDa protein 14	0.0	0.0	
chr12	31905408	31905588	reg1005598.p3	4.047	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-23442	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-23524	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-92884	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	39706	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	206833	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	206896	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.0	0.0	
chr15	93376303	93376434	reg1013822.p2	4.047	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-98979	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-177489	-	AK057393 NM_153040	-361462	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	67118	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	67212	+	AK295909 TSC_hg19_v1_chr15_+_93447798	71392	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	0.010225	0.0	
chr18	45439172	45439291	reg1011693.p1	4.047	+	TSC_hg19_v1_chr18_-_44702736 NM_016097	-736481	-	TSC_hg19_v1_chr18_-_44702734 AK027108	-736498	-	CR533488 DQ892866 DQ896115 EU831653 EU831736 BC017391 TSC_hg19_v1_chr18_-_44702679 BC010888 AF164798 AF371963 AF125100 AL136667	-736542	-	BC014840 NM_005901	17694	-	TSC_hg19_v1_chr18_-_45457252 AK299218 U59911 AF027964 BC025699 AK312963	17984	-	TSC_hg19_v1_chr18_-_45457485 NM_001003652 NM_001135937	18258	-	NM_016097|IER3IP1|51124|immediate early response 3 interacting protein 1##AK027108|IER3IP1|51124|immediate early response 3 interacting protein 1##CR533488|IER3IP1|51124|immediate early response 3 interacting protein 1##DQ892866|IER3IP1|51124|immediate early response 3 interacting protein 1##DQ896115|IER3IP1|51124|immediate early response 3 interacting protein 1##EU831653|IER3IP1|51124|immediate early response 3 interacting protein 1##EU831736|IER3IP1|51124|immediate early response 3 interacting protein 1##BC017391|IER3IP1|51124|immediate early response 3 interacting protein 1##BC010888|IER3IP1|51124|immediate early response 3 interacting protein 1##AF164798|IER3IP1|51124|immediate early response 3 interacting protein 1##AF371963|IER3IP1|51124|immediate early response 3 interacting protein 1##AF125100|IER3IP1|51124|immediate early response 3 interacting protein 1##AL136667|IER3IP1|51124|immediate early response 3 interacting protein 1##BC014840|SMAD2|4087|SMAD family member 2##NM_005901|SMAD2|4087|SMAD family member 2##AK299218|SMAD2|4087|SMAD family member 2##U59911|SMAD2|4087|SMAD family member 2##AF027964|SMAD2|4087|SMAD family member 2##BC025699|SMAD2|4087|SMAD family member 2##AK312963|SMAD2|4087|SMAD family member 2##NM_001003652|SMAD2|4087|SMAD family member 2##NM_001135937|SMAD2|4087|SMAD family member 2	1.862654	0.0	denovo_WM_7:-30:0.558
chr2	214420978	214421069	reg1013206.p1	4.047	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-271866	+	AK124960 NM_001242575	-272095	-	BC028936 NM_001079526	-404691	-	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	855437	+	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	1253336	-	AY033486 NM_015657	1475786	-	BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	1.968826	0.0	denovo_WM_7:4:0.586	denovo_WM_7:6:0.306	denovo_WM_7:21:0.921
chr3	135857227	135857293	reg1016337.p1	4.047	+	NM_181897 AK316258 L12146	-115642	+	BC029409 TSC_hg19_v1_chr3_+_135684606 L07590	-172640	+	TSC_hg19_v1_chr3_+_135684569 NM_001190447 NM_002718 AK293012 BC015034 BC065531 AK298059 AK314243	-172729	+	AK302491 NM_001145417	56032	-	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	57421	-	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	111904	+	NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC029409|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L07590|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_001190447|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_002718|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK293012|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC015034|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC065531|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK298059|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK314243|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK302491|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_001145417|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide	0.0	0.0	
chr6	159434565	159434667	reg1013752.p1	4.047	+	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-13395	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-13797	-	TSC_hg19_v1_chr6_-_159420766 BC035675	-13847	-	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	31485	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	155814	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	679634	-	BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC035675|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial	0.992572	0.0	
chr11	46504561	46504645	reg1010821.p1	4.046	+	BC119775 BC119817 AF385590 AF498918 NM_000741 BC095546 BC137535	-96472	-	NM_001012333 TSC_hg19_v1_chr11_+_46403310	-101297	+	TSC_hg19_v1_chr11_+_46403285 X55110	-101316	+	BC045609 NM_017749 AK302808	108339	-	AL834190 TSC_hg19_v1_chr11_-_46615568 AK057896 AK000301 AB051523	110932	-	AK304530 TSC_hg19_v1_chr11_-_46615589	111000	-	BC119775|CHRM4|1132|cholinergic receptor, muscarinic 4##BC119817|CHRM4|1132|cholinergic receptor, muscarinic 4##AF385590|CHRM4|1132|cholinergic receptor, muscarinic 4##AF498918|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_000741|CHRM4|1132|cholinergic receptor, muscarinic 4##BC095546|CHRM4|1132|cholinergic receptor, muscarinic 4##BC137535|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_001012333|MDK|4192|midkine (neurite growth-promoting factor 2)##X55110|MDK|4192|midkine (neurite growth-promoting factor 2)##BC045609|AMBRA1|55626|autophagy/beclin-1 regulator 1##NM_017749|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK302808|AMBRA1|55626|autophagy/beclin-1 regulator 1##AL834190|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK057896|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK000301|AMBRA1|55626|autophagy/beclin-1 regulator 1##AB051523|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK304530|AMBRA1|55626|autophagy/beclin-1 regulator 1	1.02246	0.0	denovo_WM_7:-27:0.403	denovo_WM_7:-35:0.327
chr12	6536342	6536454	reg1003272.p1	4.046	+	TSC_hg19_v1_chr12_+_6493333 AK095418 BC026262 AK027080 L04270 NM_002342 AB527559 DQ891995 DQ895185 CU693188	-43026	+	AK304379 NM_001159575	-49876	-	NM_001038	-51494	-	AK315732 NM_001242 BC012160 M63928 DQ892296 EU176659 AB590221 CU680244	17748	+	NM_018009 TSC_hg19_v1_chr12_+_6561272 BC015017 AK223163 AK001005 AK002056 AK222956 AK098035 HQ258015	24896	+	TSC_hg19_v1_chr12_-_6579844 AF060538 BC023286 AK289498 AK296294 AK303137 AK309184 NM_014231 NM_016830 NM_199245	43416	-	AK095418|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##BC026262|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK027080|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##L04270|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##NM_002342|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ891995|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ895185|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK304379|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001159575|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001038|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##AK315732|CD27|939|CD27 molecule##NM_001242|CD27|939|CD27 molecule##BC012160|CD27|939|CD27 molecule##M63928|CD27|939|CD27 molecule##DQ892296|CD27|939|CD27 molecule##EU176659|CD27|939|CD27 molecule##NM_018009|TAPBPL|55080|TAP binding protein-like##BC015017|TAPBPL|55080|TAP binding protein-like##AK223163|TAPBPL|55080|TAP binding protein-like##AK001005|TAPBPL|55080|TAP binding protein-like##AK002056|TAPBPL|55080|TAP binding protein-like##AK222956|TAPBPL|55080|TAP binding protein-like##AK098035|TAPBPL|55080|TAP binding protein-like##HQ258015|TAPBPL|55080|TAP binding protein-like##AF060538|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##BC023286|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK289498|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK296294|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK303137|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK309184|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_014231|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_016830|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_199245|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)	0.0	0.0	
chr14	50087490	50087598	reg1010029.p2	4.046	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	-200	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	-22084	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-34451	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	163	+	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	13152	-	FJ158843 TSC_hg19_v1_chr14_-_50101912	14348	-	BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2##FJ158843|DNAAF2|55172|dynein, axonemal, assembly factor 2	0.0	0.0	
chr20	5026581	5026693	reg1012701.p1	4.046	+	BC013112 AF164142 NM_203327	-35712	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-44477	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-222443	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	66978	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	73918	-	AK300558 AK311014 NM_002592	80589	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.0	0.0	
chr2	182140512	182140586	reg1014447.p2	4.046	+	TSC_hg19_v1_chr2_+_181845809 AK314145	-294722	+	AF085362 BC003554 AB017644 TSC_hg19_v1_chr2_+_181845681	-294906	+	TSC_hg19_v1_chr2_+_181845369 BC092407	-295179	+	NM_000885	181069	+	BC055419 AJ504733 AJ508356 L12002 TSC_hg19_v1_chr2_+_182322149 AK303478 BC016671	181501	+	TSC_hg19_v1_chr2_+_182322277 X16983 AB527164	181773	+	AK314145|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AF085362|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC003554|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##AB017644|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##BC092407|UBE2E3|10477|ubiquitin-conjugating enzyme E2E 3##NM_000885|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC055419|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ504733|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AJ508356|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##L12002|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##AK303478|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##BC016671|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)##X16983|ITGA4|3676|integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor)	0.0	0.0	
chr2	238724328	238724467	reg1013219.p1	4.046	+	NM_001080504 TSC_hg19_v1_chr2_+_238707424 BX648107	-16977	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	-123322	+	TSC_hg19_v1_chr2_+_238600975 AJ223075 BC001385 AK298270 U69609 BC108913 BC108914 AK307485	-123454	+	NM_005855 TSC_hg19_v1_chr2_+_238768265 AJ001014 BC000548 DQ891905 DQ895091 AY265457 CR542032 CR542044	43855	+	NM_080678 TSC_hg19_v1_chr2_+_238875655 AK002119 AK293334 AK297502 AK303094	151227	+	TSC_hg19_v1_chr2_+_238875673 AK290063	151283	+	NM_001080504|RBM44|375316|RNA binding motif protein 44##BX648107|RBM44|375316|RNA binding motif protein 44##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AJ223075|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC001385|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK298270|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##U69609|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108913|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108914|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK307485|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_005855|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AJ001014|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##BC000548|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ891905|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##DQ895091|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##AY265457|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542032|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##CR542044|RAMP1|10267|receptor (G protein-coupled) activity modifying protein 1##NM_080678|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK293334|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK297502|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK303094|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)##AK290063|UBE2F|140739|ubiquitin-conjugating enzyme E2F (putative)	0.0	0.0	
chr22	41900627	41900705	reg1016710.p1	4.046	+	TSC_hg19_v1_chr22_+_41865120 AK293562 AK297213 AK301321 AK314845 AK302691 AK296260 BC026196 BC014092 NM_001098 U80040 CR456365 AB385022 CR536568 CU012932 CU013220 DQ893674 DQ895836	-35535	+	AB489147 CU012956 CU013244 EU446678 TSC_hg19_v1_chr22_-_41864681 BC075808 CR456398 BC007321 NM_032758	-35982	-	TSC_hg19_v1_chr22_-_41842881 NM_016272	-57727	-	TSC_hg19_v1_chr22_-_41940381 AB051452 BC088367 BC017248	39687	-	TSC_hg19_v1_chr22_-_41940495 AY092087 AK026524 AK129663 NM_138338 NM_001018050 NM_001018052 CR456459	39834	-	TSC_hg19_v1_chr22_+_41957014 NM_014460 AK313407 BC067113 AL834417	56403	+	AK293562|ACO2|50|aconitase 2, mitochondrial##AK297213|ACO2|50|aconitase 2, mitochondrial##AK301321|ACO2|50|aconitase 2, mitochondrial##AK314845|ACO2|50|aconitase 2, mitochondrial##AK302691|ACO2|50|aconitase 2, mitochondrial##AK296260|ACO2|50|aconitase 2, mitochondrial##BC026196|ACO2|50|aconitase 2, mitochondrial##BC014092|ACO2|50|aconitase 2, mitochondrial##NM_001098|ACO2|50|aconitase 2, mitochondrial##U80040|ACO2|50|aconitase 2, mitochondrial##CR456365|ACO2|50|aconitase 2, mitochondrial##CR536568|ACO2|50|aconitase 2, mitochondrial##CU012932|ACO2|50|aconitase 2, mitochondrial##CU013220|ACO2|50|aconitase 2, mitochondrial##DQ893674|ACO2|50|aconitase 2, mitochondrial##DQ895836|ACO2|50|aconitase 2, mitochondrial##CU012956|PHF5A|84844|PHD finger protein 5A##CU013244|PHF5A|84844|PHD finger protein 5A##EU446678|PHF5A|84844|PHD finger protein 5A##BC075808|PHF5A|84844|PHD finger protein 5A##CR456398|PHF5A|84844|PHD finger protein 5A##BC007321|PHF5A|84844|PHD finger protein 5A##NM_032758|PHF5A|84844|PHD finger protein 5A##NM_016272|TOB2|10766|transducer of ERBB2, 2##AB051452|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC088367|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##BC017248|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AY092087|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK026524|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##AK129663|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_138338|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018050|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_001018052|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##CR456459|POLR3H|171568|polymerase (RNA) III (DNA directed) polypeptide H (22.9kD)##NM_014460|CSDC2|27254|cold shock domain containing C2, RNA binding##AK313407|CSDC2|27254|cold shock domain containing C2, RNA binding##BC067113|CSDC2|27254|cold shock domain containing C2, RNA binding##AL834417|CSDC2|27254|cold shock domain containing C2, RNA binding	1.99036	0.0	denovo_WM_7:56:0.270	denovo_WM_7:57:0.726	denovo_WM_7:72:0.859
chr11	121775028	121775160	reg1013681.p2	4.045	+	TSC_hg19_v1_chr11_+_121461071 AK294404	-313996	+	TSC_hg19_v1_chr11_+_121323112 AK309523	-451919	+	TSC_hg19_v1_chr11_+_121323026 NM_003105 Y08110 BC137171 AB463277	-452145	+	BC130361 BC130363 AF303179 NM_001001786	211767	-	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	751453	+	BC070266 AK313578 AF001622 NM_019604	934135	+	AK294404|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##AK309523|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##NM_003105|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##Y08110|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC137171|SORL1|6653|sortilin-related receptor, L(DLR class) A repeats containing##BC130361|BLID|414899|BH3-like motif containing, cell death inducer##BC130363|BLID|414899|BH3-like motif containing, cell death inducer##AF303179|BLID|414899|BH3-like motif containing, cell death inducer##NM_001001786|BLID|414899|BH3-like motif containing, cell death inducer##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC070266|CRTAM|56253|cytotoxic and regulatory T cell molecule##AK313578|CRTAM|56253|cytotoxic and regulatory T cell molecule##AF001622|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_019604|CRTAM|56253|cytotoxic and regulatory T cell molecule	0.99204	0.0	denovo_WM_7:-6:0.837
chr12	92864499	92864645	reg1009864.p2	4.045	+	AJ845168 NM_001025232	-42649	-	AJ845165 AJ845166 NM_001025233	-46838	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-324929	-	NM_001037671 NM_001178097	232046	+	NM_001004330 AK128530	265715	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	458366	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.011727	0.0	
chr19	1909214	1909335	reg1003165.p2	4.045	+	TSC_hg19_v1_chr19_+_1905397 AK074967 AK126544 AK307641 BC016509 BC062598 AK307700 AK092056 AX747336 BC011747 BC011824 NM_138422	-3869	+	TSC_hg19_v1_chr19_+_1905370 AK074586 NM_079834	-3922	+	TSC_hg19_v1_chr19_-_1885489 AK289533 BC035961 AK074548 NM_001130111 NM_031213	-23770	-	TSC_hg19_v1_chr19_+_1941164 NM_001319	31889	+	TSC_hg19_v1_chr19_+_1941192 BC018693 BC018699	31914	+	TSC_hg19_v1_chr19_-_2015708 AB527352 AF355797 NM_017797 AK225831	106396	-	AK074967|SCAMP4|113178|secretory carrier membrane protein 4##AK307641|SCAMP4|113178|secretory carrier membrane protein 4##BC016509|SCAMP4|113178|secretory carrier membrane protein 4##BC062598|SCAMP4|113178|secretory carrier membrane protein 4##AK307700|SCAMP4|113178|secretory carrier membrane protein 4##AK092056|SCAMP4|113178|secretory carrier membrane protein 4##BC011747|SCAMP4|113178|secretory carrier membrane protein 4##BC011824|ADAT3|113179|adenosine deaminase, tRNA-specific 3##NM_138422|ADAT3|113179|adenosine deaminase, tRNA-specific 3##AK074586|SCAMP4|113178|secretory carrier membrane protein 4##NM_079834|SCAMP4|113178|secretory carrier membrane protein 4##AK289533|FAM108A1|81926|family with sequence similarity 108, member A1##BC035961|FAM108A1|81926|family with sequence similarity 108, member A1##AK074548|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001130111|FAM108A1|81926|family with sequence similarity 108, member A1##NM_031213|FAM108A1|81926|family with sequence similarity 108, member A1##NM_001319|CSNK1G2|1455|casein kinase 1, gamma 2##BC018693|CSNK1G2|1455|casein kinase 1, gamma 2##BC018699|CSNK1G2|1455|casein kinase 1, gamma 2##AF355797|BTBD2|55643|BTB (POZ) domain containing 2##NM_017797|BTBD2|55643|BTB (POZ) domain containing 2##AK225831|BTBD2|55643|BTB (POZ) domain containing 2	0.0	0.0	
chr2	111506133	111506300	reg1014731.p1	4.045	+	AK300513 NM_001142807 BC022268	-16037	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-70394	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-70573	-	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	372271	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	1135410	-	TSC_hg19_v1_chr2_-_112641759 AJ278357 NM_022662	1135545	-	AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1##AJ278357|ANAPC1|64682|anaphase promoting complex subunit 1##NM_022662|ANAPC1|64682|anaphase promoting complex subunit 1	0.0	0.0	
chr4	73371041	73371158	reg1014129.p2	4.045	+	AK290937 NM_001144756 NM_053036 AF236083	-466229	+	AF119815 NM_004885 AK308069 AJ311393	-473530	+	AK223458 NM_001204306	-699863	-	AB002364 AB385317 BC130287 BC132735 AF247668 NM_014243	63392	-	BC101684 BC143642 TSC_hg19_v1_chr4_-_73935431 AK096310 AY957564 AY957565 BC071812 NM_173827	564344	-	TSC_hg19_v1_chr4_-_74088775 BX648035 AK300302	717680	-	AK290937|NPFFR2|10886|neuropeptide FF receptor 2##NM_001144756|NPFFR2|10886|neuropeptide FF receptor 2##NM_053036|NPFFR2|10886|neuropeptide FF receptor 2##AF236083|NPFFR2|10886|neuropeptide FF receptor 2##AF119815|NPFFR2|10886|neuropeptide FF receptor 2##NM_004885|NPFFR2|10886|neuropeptide FF receptor 2##AK308069|NPFFR2|10886|neuropeptide FF receptor 2##AJ311393|NPFFR2|10886|neuropeptide FF receptor 2##AK223458|GC|2638|group-specific component (vitamin D binding protein)##NM_001204306|GC|2638|group-specific component (vitamin D binding protein)##AB002364|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC130287|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC132735|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##AF247668|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##NM_014243|ADAMTS3|9508|ADAM metallopeptidase with thrombospondin type 1 motif, 3##BC101684|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC143642|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK096310|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##AY957564|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##AY957565|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC071812|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_173827|COX18|285521|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)##BX648035|ANKRD17|26057|ankyrin repeat domain 17##AK300302|ANKRD17|26057|ankyrin repeat domain 17	0.0	0.121792	
chr6	3414939	3415059	reg1015002.p1	4.045	+	TSC_hg19_v1_chr6_-_3272352 BC090851 BC022217	-142569	-	TSC_hg19_v1_chr6_+_3259232 AK126623 AK095683	-155760	+	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	-155841	+	BC128580 BC128581 BC038748 NM_021945	30208	-	TSC_hg19_v1_chr6_-_3456513 AL110245	41515	-	BC040876 NM_015482	41764	-	BC090851|SLC22A23|63027|solute carrier family 22, member 23##BC022217|SLC22A23|63027|solute carrier family 22, member 23##AK126623|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK095683|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##BC128580|SLC22A23|63027|solute carrier family 22, member 23##BC128581|SLC22A23|63027|solute carrier family 22, member 23##BC038748|SLC22A23|63027|solute carrier family 22, member 23##NM_021945|SLC22A23|63027|solute carrier family 22, member 23##AL110245|SLC22A23|63027|solute carrier family 22, member 23##BC040876|SLC22A23|63027|solute carrier family 22, member 23##NM_015482|SLC22A23|63027|solute carrier family 22, member 23	0.997272	0.0	
chr7	112580540	112580720	reg1009172.p2	4.045	+	AL834437 AK299901 TSC_hg19_v1_chr7_-_112579931 BC114615 AK056380 NM_152556	-800	-	AK293311 TSC_hg19_v1_chr7_-_112430447 AK314460 AL136626 AK025482 NM_022484	-150187	-	NM_001134468 BC031976 AK096894 NM_182597	-459644	+	AK297464 AK312587 NM_001146266 AL161959 NM_001146267 TSC_hg19_v1_chr7_-_112726667	145865	-	BC030577 TSC_hg19_v1_chr7_-_112727780	147150	-	TSC_hg19_v1_chr7_-_112727812 AK309392 AF250237 AK302769	147177	-	AL834437|C7orf60|154743|chromosome 7 open reading frame 60##AK299901|C7orf60|154743|chromosome 7 open reading frame 60##BC114615|C7orf60|154743|chromosome 7 open reading frame 60##AK056380|C7orf60|154743|chromosome 7 open reading frame 60##NM_152556|C7orf60|154743|chromosome 7 open reading frame 60##AK293311|TMEM168|64418|transmembrane protein 168##AK314460|TMEM168|64418|transmembrane protein 168##AL136626|TMEM168|64418|transmembrane protein 168##AK025482|TMEM168|64418|transmembrane protein 168##NM_022484|TMEM168|64418|transmembrane protein 168##NM_001134468|C7orf53|286006|chromosome 7 open reading frame 53##BC031976|C7orf53|286006|chromosome 7 open reading frame 53##AK096894|C7orf53|286006|chromosome 7 open reading frame 53##NM_182597|C7orf53|286006|chromosome 7 open reading frame 53##AK297464|GPR85|54329|G protein-coupled receptor 85##AK312587|GPR85|54329|G protein-coupled receptor 85##NM_001146266|GPR85|54329|G protein-coupled receptor 85##AL161959|GPR85|54329|G protein-coupled receptor 85##NM_001146267|GPR85|54329|G protein-coupled receptor 85##BC030577|GPR85|54329|G protein-coupled receptor 85##AK309392|GPR85|54329|G protein-coupled receptor 85##AF250237|GPR85|54329|G protein-coupled receptor 85##AK302769|GPR85|54329|G protein-coupled receptor 85	0.0	0.0	
chr7	73627812	73627878	reg1010886.p1	4.045	+	TSC_hg19_v1_chr7_+_73624361 AF252613	-3491	+	TSC_hg19_v1_chr7_+_73624338 AF161531 AF252611 AF252612 AF252614 AK225150 AK290074 AK290916	-3509	+	TSC_hg19_v1_chr7_+_73624283 BC001609 AK002099 BC006080	-3563	+	TSC_hg19_v1_chr7_-_73668718 AB451243 AB451368 AB464141 BT007058 BC002813	40866	-	TSC_hg19_v1_chr7_-_73668740 NM_002914 NM_181471	40891	-	TSC_hg19_v1_chr7_+_73703766 AB006629 BC150332 NM_003388 NM_032421	75942	+	AF252613|LAT2|7462|linker for activation of T cells family, member 2##AF161531|LAT2|7462|linker for activation of T cells family, member 2##AF252611|LAT2|7462|linker for activation of T cells family, member 2##AF252612|LAT2|7462|linker for activation of T cells family, member 2##AF252614|LAT2|7462|linker for activation of T cells family, member 2##AK225150|LAT2|7462|linker for activation of T cells family, member 2##AK290074|LAT2|7462|linker for activation of T cells family, member 2##AK290916|LAT2|7462|linker for activation of T cells family, member 2##BC001609|LAT2|7462|linker for activation of T cells family, member 2##AK002099|LAT2|7462|linker for activation of T cells family, member 2##BC006080|LAT2|7462|linker for activation of T cells family, member 2##AB451243|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB451368|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BT007058|RFC2|5982|replication factor C (activator 1) 2, 40kDa##BC002813|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_002914|RFC2|5982|replication factor C (activator 1) 2, 40kDa##NM_181471|RFC2|5982|replication factor C (activator 1) 2, 40kDa##AB006629|CLIP2|7461|CAP-GLY domain containing linker protein 2##BC150332|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_003388|CLIP2|7461|CAP-GLY domain containing linker protein 2##NM_032421|CLIP2|7461|CAP-GLY domain containing linker protein 2	0.996394	0.0	
chr8	100026196	100026324	reg1012212.p1	4.045	+	TSC_hg19_v1_chr8_+_100025537 BC094749	-670	+	AJ608772 AJ608773 TSC_hg19_v1_chr8_+_100025501	-748	+	AY223814 AY223815 AY223816 AY223817 AY223818 NM_015243 NM_017890 NM_152564 NM_181661 TSC_hg19_v1_chr8_+_100025498	-765	+	TSC_hg19_v1_chr8_-_100905892 X13238	879619	-	TSC_hg19_v1_chr8_-_100905910 AK311791	879661	-	NM_004374	879981	-	BC094749|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608772|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608773|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223814|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223815|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223816|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223817|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223818|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_015243|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_017890|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_152564|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_181661|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##X13238|COX6C|1345|cytochrome c oxidase subunit VIc##AK311791|COX6C|1345|cytochrome c oxidase subunit VIc##NM_004374|COX6C|1345|cytochrome c oxidase subunit VIc	1.918277	0.0	denovo_WM_7:81:0.864	denovo_WM_7:96:0.881
chr9	21369395	21369473	reg1017095.p2	4.045	+	AB464595 CU686802 HQ258738 JN848523 BC093988 BC112002 BC069427 NM_006900	-1395	-	AB590746 BC069471 BC096697 BC096710 BC096730 BC098357 NM_021002	-18549	-	BX538121 BC064958 TSC_hg19_v1_chr9_-_21335388 AB037775 AL713669 BC039133 AK091715 AY172949 NM_018847	-34101	-	AY255838 V00548 AB590747 CR541921 JN848522 BC074936 BC074937 BC104163 BC104164 M54886 V00544 V00549 NM_000605	15892	-	K01900 NM_002170 BC104828 BC104830 V00545 V00550	39706	+	NM_024013 V00538 V00537 BC112300 BC112302 BC074928 BC074929 AB464595 CU686802 HQ258738 JN848523	71045	+	HQ258738|IFNA1|3439|interferon, alpha 1##BC093988|IFNA13|3447|interferon, alpha 13##BC112002|IFNA1|3439|interferon, alpha 1##BC069427|IFNA13|3447|interferon, alpha 13##NM_006900|IFNA13|3447|interferon, alpha 13##BC069471|IFNA6|3443|interferon, alpha 6##BC096697|IFNA6|3443|interferon, alpha 6##BC096710|IFNA6|3443|interferon, alpha 6##BC096730|IFNA6|3443|interferon, alpha 6##BC098357|IFNA6|3443|interferon, alpha 6##NM_021002|IFNA6|3443|interferon, alpha 6##BX538121|KLHL9|55958|kelch-like 9 (Drosophila)##BC064958|KLHL9|55958|kelch-like 9 (Drosophila)##AB037775|KLHL9|55958|kelch-like 9 (Drosophila)##AL713669|KLHL9|55958|kelch-like 9 (Drosophila)##BC039133|KLHL9|55958|kelch-like 9 (Drosophila)##AK091715|KLHL9|55958|kelch-like 9 (Drosophila)##AY172949|KLHL9|55958|kelch-like 9 (Drosophila)##NM_018847|KLHL9|55958|kelch-like 9 (Drosophila)##AY255838|IFNA2|3440|interferon, alpha 2##V00548|IFNA2|3440|interferon, alpha 2##CR541921|IFNA2|3440|interferon, alpha 2##BC074936|IFNA2|3440|interferon, alpha 2##BC074937|IFNA2|3440|interferon, alpha 2##BC104163|IFNA2|3440|interferon, alpha 2##BC104164|IFNA2|3440|interferon, alpha 2##M54886|IFNA2|3440|interferon, alpha 2##V00544|IFNA2|3440|interferon, alpha 2##V00549|IFNA2|3440|interferon, alpha 2##NM_000605|IFNA2|3440|interferon, alpha 2##K01900|IFNA8|3445|interferon, alpha 8##NM_002170|IFNA8|3445|interferon, alpha 8##BC104828|IFNA8|3445|interferon, alpha 8##BC104830|IFNA8|3445|interferon, alpha 8##V00545|IFNA8|3445|interferon, alpha 8##V00550|IFNA8|3445|interferon, alpha 8##NM_024013|IFNA1|3439|interferon, alpha 1##V00538|IFNA1|3439|interferon, alpha 1##V00537|IFNA1|3439|interferon, alpha 1##BC112300|IFNA1|3439|interferon, alpha 1##BC112302|IFNA1|3439|interferon, alpha 1##BC074928|IFNA1|3439|interferon, alpha 1##BC074929|IFNA1|3439|interferon, alpha 1##HQ258738|IFNA1|3439|interferon, alpha 1	0.0	0.0	
chr10	79596882	79596948	reg1010194.p2	4.044	+	BC009695 AK098326 TSC_hg19_v1_chr10_-_79397567 BC062659 BC024965 NM_001014797 NM_001161352 NM_001161353 NM_002247	-199352	-	U13913 BC137115 BC137137 BC144496 CR627384 TSC_hg19_v1_chr10_-_79397499	-199429	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	-199509	-	TSC_hg19_v1_chr10_-_79628871 BC117695	31994	-	AB384502 NM_004747 AB011155 BC146794 TSC_hg19_v1_chr10_-_79686514	89487	-	AF021351 AY091459 AB384941 TSC_hg19_v1_chr10_-_79789272 BC041089 AK300329	192306	-	BC009695|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC062659|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC024965|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_001014797|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_001161352|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_001161353|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##NM_002247|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U13913|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC137115|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC137137|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC144496|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##BC117695|DLG5|9231|discs, large homolog 5 (Drosophila)##NM_004747|DLG5|9231|discs, large homolog 5 (Drosophila)##AB011155|DLG5|9231|discs, large homolog 5 (Drosophila)##BC146794|DLG5|9231|discs, large homolog 5 (Drosophila)##AF021351|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AY091459|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC041089|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##AK300329|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa	1.236646	0.0	denovo_WM_7:63:0.245	denovo_WM_7:78:0.255
chr1	104663281	104663371	reg1011533.p1	4.044	+	NM_004038 NM_001008219 NM_001008218 BC063129 BC070302 AK313275 BC092444 BC132985 BC132987 BC132997 BC144452 BC132995	-370824	+	NM_001008221 AK292341	-371048	+	AK292341 NM_001008221	-424255	-	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	2936039	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	3019416	+	AB023193 TSC_hg19_v1_chr1_+_107683657	3020278	+	NM_004038|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008219|AMY1C|278|amylase, alpha 1C (salivary)##NM_001008218|AMY1B|277|amylase, alpha 1B (salivary)##BC063129|AMY1A|276|amylase, alpha 1A (salivary)##BC070302|AMY1A|276|amylase, alpha 1A (salivary)##AK313275|AMY1A|276|amylase, alpha 1A (salivary)##BC092444|AMY1A|276|amylase, alpha 1A (salivary)##BC132985|AMY1A|276|amylase, alpha 1A (salivary)##BC132987|AMY1A|276|amylase, alpha 1A (salivary)##BC132997|AMY1A|276|amylase, alpha 1A (salivary)##BC144452|AMY1A|276|amylase, alpha 1A (salivary)##BC132995|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AB023193|NTNG1|22854|netrin G1	0.996873	0.47795	CTCF.p2:-9:0.478
chr11	130346310	130346445	reg1019152.p1	4.044	+	TSC_hg19_v1_chr11_+_130318539 AJ315733 BC109114 NM_139055	-27715	+	TSC_hg19_v1_chr11_-_130298505 NM_007037	-47857	-	BC113874 TSC_hg19_v1_chr11_-_130298419 BC089435	-48015	-	TSC_hg19_v1_chr11_-_130786371 AK316505 AK304809 AK309202 BC031620 AK316414 D87443	439968	-	TSC_hg19_v1_chr11_-_130786375 NM_014758 AK292457	440011	-	NM_001048209 AK315964 TSC_hg19_v1_chr11_+_131240520 AK293487 AY358331	894092	+	AJ315733|ADAMTS15|170689|ADAM metallopeptidase with thrombospondin type 1 motif, 15##BC109114|ADAMTS15|170689|ADAM metallopeptidase with thrombospondin type 1 motif, 15##NM_139055|ADAMTS15|170689|ADAM metallopeptidase with thrombospondin type 1 motif, 15##NM_007037|ADAMTS8|11095|ADAM metallopeptidase with thrombospondin type 1 motif, 8##BC113874|ADAMTS8|11095|ADAM metallopeptidase with thrombospondin type 1 motif, 8##BC089435|ADAMTS8|11095|ADAM metallopeptidase with thrombospondin type 1 motif, 8##AK316505|SNX19|399979|sorting nexin 19##AK304809|SNX19|399979|sorting nexin 19##AK309202|SNX19|399979|sorting nexin 19##BC031620|SNX19|399979|sorting nexin 19##AK316414|SNX19|399979|sorting nexin 19##D87443|SNX19|399979|sorting nexin 19##NM_014758|SNX19|399979|sorting nexin 19##AK292457|SNX19|399979|sorting nexin 19##NM_001048209|NTM|50863|neurotrimin##AK315964|NTM|50863|neurotrimin##AK293487|NTM|50863|neurotrimin##AY358331|NTM|50863|neurotrimin	0.0	0.0	
chr11	44184137	44184241	reg1015150.p1	4.044	+	NM_000401 BX648142	-66430	+	BC068545 TSC_hg19_v1_chr11_+_44117272 U72263 BC013050	-66918	+	NM_001178083 NM_207122 U62740 TSC_hg19_v1_chr11_+_44117224 AK312375 BC010058 AK296713	-67015	+	AB385504 AB058691 AJ404888 AF294629 NM_021926 AK092346	147487	-	NM_001024844 NM_002231 TSC_hg19_v1_chr11_+_44587187 AK225708	402976	+	TSC_hg19_v1_chr11_+_44587214 AK225410 AK312677 S48196 U20770 X53795 BC000726 BC001821	403038	+	NM_000401|EXT2|2132|exostosin 2##BX648142|EXT2|2132|exostosin 2##BC068545|EXT2|2132|exostosin 2##U72263|EXT2|2132|exostosin 2##BC013050|EXT2|2132|exostosin 2##NM_001178083|EXT2|2132|exostosin 2##NM_207122|EXT2|2132|exostosin 2##U62740|EXT2|2132|exostosin 2##AK312375|EXT2|2132|exostosin 2##BC010058|EXT2|2132|exostosin 2##AK296713|EXT2|2132|exostosin 2##AB058691|ALX4|60529|ALX homeobox 4##AJ404888|ALX4|60529|ALX homeobox 4##AF294629|ALX4|60529|ALX homeobox 4##NM_021926|ALX4|60529|ALX homeobox 4##AK092346|ALX4|60529|ALX homeobox 4##NM_001024844|CD82|3732|CD82 molecule##NM_002231|CD82|3732|CD82 molecule##AK225708|CD82|3732|CD82 molecule##AK225410|CD82|3732|CD82 molecule##AK312677|CD82|3732|CD82 molecule##S48196|CD82|3732|CD82 molecule##U20770|CD82|3732|CD82 molecule##BC000726|CD82|3732|CD82 molecule##BC001821|CD82|3732|CD82 molecule	0.999537	0.0	
chr12	58087548	58087696	reg1013383.p1	4.044	+	TSC_hg19_v1_chr12_-_58026955 AB209460 AK289690 BC029828 NM_001478 AK299845	-60678	-	M83651 TSC_hg19_v1_chr12_-_58026719	-60957	-	AK293432 TSC_hg19_v1_chr12_-_58026433 AK302503	-61177	-	NM_001017956 NM_001017957 NM_001017958 NM_006812 AK303291 AK291374 TSC_hg19_v1_chr12_+_58087929 AB002806 AK129781 AK293435 AK294870 AK130733 AK296770 AK298532 AK303858 AK304533 BC000532 BC007254 BC023513 AB590116 CR456791 CU674262 CU675585 DQ892759 DQ896004	218	+	TSC_hg19_v1_chr12_+_58120054 AK301303 BC069024 BC098453 BC039697 BC019026	32446	+	AY128689 NM_001122772	44406	-	AB209460|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK289690|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##BC029828|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##NM_001478|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK299845|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##M83651|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK293432|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##AK302503|B4GALNT1|2583|beta-1,4-N-acetyl-galactosaminyl transferase 1##NM_001017956|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##NM_001017957|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##NM_001017958|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##NM_006812|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK303291|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK291374|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AB002806|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK129781|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK293435|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK294870|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK130733|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK296770|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK298532|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK303858|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK304533|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##BC000532|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##BC007254|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##BC023513|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##CR456791|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##DQ892759|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##DQ896004|OS9|10956|osteosarcoma amplified 9, endoplasmic reticulum lectin##AK301303|LOC100130776|100130776|uncharacterized LOC100130776##BC069024|LOC100130776|100130776|uncharacterized LOC100130776##BC039697|LOC100130776|100130776|uncharacterized LOC100130776##BC019026|LOC100130776|100130776|uncharacterized LOC100130776##AY128689|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2##NM_001122772|AGAP2|116986|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	0.0	0.0	
chr3	124306423	124306584	reg1011717.p1	4.044	+	NM_007064 TSC_hg19_v1_chr3_+_124303522 BC058015 AB011422	-2975	+	TSC_hg19_v1_chr3_+_124103674 AK131379	-202880	+	AK314126 AK311154 NM_001024660 NM_003947 AK311581 U94190 BC037924 AB384665	-492898	+	J03626 NM_000373 TSC_hg19_v1_chr3_+_124449256	142736	+	TSC_hg19_v1_chr3_+_124449303 AL080099 AB062285 BC000364 BC007511 EU832341 EU832426 EU921886 EU921887 EU921888 EU921889 EU921890 EU921891 EU921892 EU921893 EU921894 EU921895 AK291306 D86227 D86228 D86230 CR456787 M36661	142813	+	TSC_hg19_v1_chr3_-_124605863 AB587397 DQ892778 DQ896025 M35011 AK315429 J05633	299363	-	NM_007064|KALRN|8997|kalirin, RhoGEF kinase##BC058015|KALRN|8997|kalirin, RhoGEF kinase##AB011422|KALRN|8997|kalirin, RhoGEF kinase##AK131379|KALRN|8997|kalirin, RhoGEF kinase##AK314126|KALRN|8997|kalirin, RhoGEF kinase##AK311154|KALRN|8997|kalirin, RhoGEF kinase##NM_001024660|KALRN|8997|kalirin, RhoGEF kinase##NM_003947|KALRN|8997|kalirin, RhoGEF kinase##AK311581|KALRN|8997|kalirin, RhoGEF kinase##U94190|KALRN|8997|kalirin, RhoGEF kinase##BC037924|KALRN|8997|kalirin, RhoGEF kinase##J03626|UMPS|7372|uridine monophosphate synthetase##NM_000373|UMPS|7372|uridine monophosphate synthetase##AL080099|UMPS|7372|uridine monophosphate synthetase##AB062285|UMPS|7372|uridine monophosphate synthetase##BC000364|UMPS|7372|uridine monophosphate synthetase##BC007511|UMPS|7372|uridine monophosphate synthetase##EU832341|UMPS|7372|uridine monophosphate synthetase##EU832426|UMPS|7372|uridine monophosphate synthetase##EU921886|UMPS|7372|uridine monophosphate synthetase##EU921887|UMPS|7372|uridine monophosphate synthetase##EU921888|UMPS|7372|uridine monophosphate synthetase##EU921889|UMPS|7372|uridine monophosphate synthetase##EU921890|UMPS|7372|uridine monophosphate synthetase##EU921891|UMPS|7372|uridine monophosphate synthetase##EU921892|UMPS|7372|uridine monophosphate synthetase##EU921893|UMPS|7372|uridine monophosphate synthetase##EU921894|UMPS|7372|uridine monophosphate synthetase##EU921895|UMPS|7372|uridine monophosphate synthetase##AK291306|UMPS|7372|uridine monophosphate synthetase##D86227|UMPS|7372|uridine monophosphate synthetase##D86228|UMPS|7372|uridine monophosphate synthetase##D86230|UMPS|7372|uridine monophosphate synthetase##CR456787|UMPS|7372|uridine monophosphate synthetase##M36661|UMPS|7372|uridine monophosphate synthetase##DQ892778|ITGB5|3693|integrin, beta 5##DQ896025|ITGB5|3693|integrin, beta 5##M35011|ITGB5|3693|integrin, beta 5##AK315429|ITGB5|3693|integrin, beta 5##J05633|ITGB5|3693|integrin, beta 5	0.999643	0.0	
chr3	45430009	45430162	reg1013404.p1	4.044	+	AK308146 BC025989 TSC_hg19_v1_chr3_+_45430067 D21851 NM_015340	-21	+	TSC_hg19_v1_chr3_-_45267804 NM_015444	-162260	-	AB078417 AF438313 TSC_hg19_v1_chr3_-_45267780 BC057390	-162377	-	TSC_hg19_v1_chr3_+_45635397 M80651	205500	+	TSC_hg19_v1_chr3_+_45636176 BC117236 BC117238 NM_014240 AJ132408 HQ258355	206186	+	CR749564 TSC_hg19_v1_chr3_+_45730767 NM_014016	300648	+	AK308146|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##BC025989|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##D21851|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015340|LARS2|23395|leucyl-tRNA synthetase 2, mitochondrial##NM_015444|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##AB078417|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##AF438313|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##BC057390|TMEM158|25907|transmembrane protein 158 (gene/pseudogene)##M80651|LIMD1|8994|LIM domains containing 1##BC117236|LIMD1|8994|LIM domains containing 1##BC117238|LIMD1|8994|LIM domains containing 1##NM_014240|LIMD1|8994|LIM domains containing 1##AJ132408|LIMD1|8994|LIM domains containing 1##HQ258355|LIMD1|8994|LIM domains containing 1##CR749564|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)##NM_014016|SACM1L|22908|SAC1 suppressor of actin mutations 1-like (yeast)	0.0	0.0	
chr5	159579503	159579583	reg1013918.p1	4.044	+	TSC_hg19_v1_chr5_-_159546405 AB067522 BC035076 BC105110 BC143437 NM_001130864 NM_052927	-33084	-	AK222641 TSC_hg19_v1_chr5_+_159436161 AK222984 NM_003314 U46570	-143376	+	TSC_hg19_v1_chr5_+_159436145 AK315262	-143396	+	DQ132786 NM_001130958	34830	+	NM_001040442 AB528665	46537	+	NM_001445 X90908 U19869 CU692652	76956	+	AB067522|PWWP2A|114825|PWWP domain containing 2A##BC035076|PWWP2A|114825|PWWP domain containing 2A##BC105110|PWWP2A|114825|PWWP domain containing 2A##BC143437|PWWP2A|114825|PWWP domain containing 2A##NM_001130864|PWWP2A|114825|PWWP domain containing 2A##NM_052927|PWWP2A|114825|PWWP domain containing 2A##AK222641|TTC1|7265|tetratricopeptide repeat domain 1##AK222984|TTC1|7265|tetratricopeptide repeat domain 1##NM_003314|TTC1|7265|tetratricopeptide repeat domain 1##U46570|TTC1|7265|tetratricopeptide repeat domain 1##AK315262|TTC1|7265|tetratricopeptide repeat domain 1##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal	0.987281	0.0	denovo_WM_7:40:0.440
chr8	73067562	73067683	reg1013289.p1	4.044	+	TSC_hg19_v1_chr8_-_72987818 NM_007332 Y10601 AK307942	-79788	-	AK313102 TSC_hg19_v1_chr8_-_72756692 BC006313 BC067827 NM_005098	-310914	-	AF060154 TSC_hg19_v1_chr8_-_72756646	-310994	-	AF338730 NM_004770 AK311263 TSC_hg19_v1_chr8_+_73449652	382021	+	TSC_hg19_v1_chr8_+_73921144 NM_003218 NM_017489 AK292529 AF003001 U40705 BC014646 BC029378 BC071975 CU688638 DQ892573 DQ895789 U74382 AK128828 AY576778	853490	+	TSC_hg19_v1_chr8_-_74005379 AY040546 AK292970 BC042877 NM_153225	937820	-	NM_007332|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##Y10601|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK307942|TRPA1|8989|transient receptor potential cation channel, subfamily A, member 1##AK313102|MSC|9242|musculin##BC006313|MSC|9242|musculin##BC067827|MSC|9242|musculin##NM_005098|MSC|9242|musculin##AF060154|MSC|9242|musculin##AF338730|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_004770|KCNB2|9312|potassium voltage-gated channel, Shab-related subfamily, member 2##NM_003218|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##NM_017489|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AK292529|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AF003001|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U40705|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC014646|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC029378|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##BC071975|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ892573|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##DQ895789|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##U74382|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY576778|TERF1|7013|telomeric repeat binding factor (NIMA-interacting) 1##AY040546|C8orf84|157869|chromosome 8 open reading frame 84##AK292970|C8orf84|157869|chromosome 8 open reading frame 84##BC042877|C8orf84|157869|chromosome 8 open reading frame 84##NM_153225|C8orf84|157869|chromosome 8 open reading frame 84	0.0	0.986829	CTCF.p2:-8:0.987
chr9	132779016	132779139	reg1010879.p1	4.044	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-181312	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-181355	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-181393	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	26277	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	26411	-	BC039728 NM_001136557 NM_001136558 NM_020960	36907	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.892808	0.0	denovo_WM_7:-45:0.684
chr1	1310611	1310720	reg1016578.p1	4.043	+	TSC_hg19_v1_chr1_-_1310563 NM_001127230 AK000615 NM_001127229 BC062333	-92	-	TSC_hg19_v1_chr1_-_1310537 BC035595	-131	-	TSC_hg19_v1_chr1_-_1293914 AK304615 AK225028 BC006213 BC017312 NM_032348 AY358391 AK027269 AK293442 AK315510	-16740	-	NM_017900 TSC_hg19_v1_chr1_-_1310902	198	-	AL834441 AK074112 AK056120 AY037150 TSC_hg19_v1_chr1_-_1334695 BC016333 AY116620 AK225758 NM_001039577 NM_030937	24019	-	TSC_hg19_v1_chr1_+_1334900 BC104242 BC104243 BC112998 BC112999 AK297832 AK024040 BC005108 BC068600 BC080546	24261	+	NM_001127230|AURKAIP1|54998|aurora kinase A interacting protein 1##AK000615|AURKAIP1|54998|aurora kinase A interacting protein 1##NM_001127229|AURKAIP1|54998|aurora kinase A interacting protein 1##BC062333|AURKAIP1|54998|aurora kinase A interacting protein 1##BC035595|AURKAIP1|54998|aurora kinase A interacting protein 1##AK304615|MXRA8|54587|matrix-remodelling associated 8##AK225028|MXRA8|54587|matrix-remodelling associated 8##BC006213|MXRA8|54587|matrix-remodelling associated 8##BC017312|MXRA8|54587|matrix-remodelling associated 8##NM_032348|MXRA8|54587|matrix-remodelling associated 8##AY358391|MXRA8|54587|matrix-remodelling associated 8##AK027269|MXRA8|54587|matrix-remodelling associated 8##AK293442|MXRA8|54587|matrix-remodelling associated 8##AK315510|MXRA8|54587|matrix-remodelling associated 8##NM_017900|AURKAIP1|54998|aurora kinase A interacting protein 1##AL834441|CCNL2|81669|cyclin L2##AK074112|CCNL2|81669|cyclin L2##AK056120|CCNL2|81669|cyclin L2##AY037150|CCNL2|81669|cyclin L2##BC016333|CCNL2|81669|cyclin L2##AY116620|CCNL2|81669|cyclin L2##AK225758|CCNL2|81669|cyclin L2##NM_001039577|CCNL2|81669|cyclin L2##NM_030937|CCNL2|81669|cyclin L2##BC104242|LOC148413|148413|uncharacterized LOC148413##BC104243|LOC148413|148413|uncharacterized LOC148413##BC112998|LOC148413|148413|uncharacterized LOC148413##BC112999|LOC148413|148413|uncharacterized LOC148413##AK297832|LOC148413|148413|uncharacterized LOC148413##AK024040|LOC148413|148413|uncharacterized LOC148413##BC005108|LOC148413|148413|uncharacterized LOC148413##BC068600|LOC148413|148413|uncharacterized LOC148413##BC080546|LOC148413|148413|uncharacterized LOC148413	0.0	0.0	
chr1	159177860	159178040	reg1017772.p2	4.043	+	NM_001122951 U01839	-2902	+	AK291593 NM_002036	-4148	+	AK289541 NM_021189 TSC_hg19_v1_chr1_+_159141404 AK308915 NM_001127173 AF363367 AY358332 AF062733 BC033819 AY046418 AF529206 DQ890848 DQ894002	-36485	+	NM_002001 X06948	81553	+	AB529279 NM_001004467	106498	-	BC112290 BC112292 NM_012351 BC069150	231579	+	NM_001122951|DARC|2532|Duffy blood group, chemokine receptor##U01839|DARC|2532|Duffy blood group, chemokine receptor##AK291593|DARC|2532|Duffy blood group, chemokine receptor##NM_002036|DARC|2532|Duffy blood group, chemokine receptor##AK289541|CADM3|57863|cell adhesion molecule 3##NM_021189|CADM3|57863|cell adhesion molecule 3##AK308915|CADM3|57863|cell adhesion molecule 3##NM_001127173|CADM3|57863|cell adhesion molecule 3##AF363367|CADM3|57863|cell adhesion molecule 3##AY358332|CADM3|57863|cell adhesion molecule 3##AF062733|CADM3|57863|cell adhesion molecule 3##BC033819|CADM3|57863|cell adhesion molecule 3##AY046418|CADM3|57863|cell adhesion molecule 3##AF529206|CADM3|57863|cell adhesion molecule 3##DQ890848|CADM3|57863|cell adhesion molecule 3##DQ894002|CADM3|57863|cell adhesion molecule 3##NM_002001|FCER1A|2205|Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide##X06948|FCER1A|2205|Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide##NM_001004467|OR10J3|441911|olfactory receptor, family 10, subfamily J, member 3##BC112290|OR10J1|26476|olfactory receptor, family 10, subfamily J, member 1##BC112292|OR10J1|26476|olfactory receptor, family 10, subfamily J, member 1##NM_012351|OR10J1|26476|olfactory receptor, family 10, subfamily J, member 1##BC069150|OR10J1|26476|olfactory receptor, family 10, subfamily J, member 1	0.0	0.0	
chr12	124068835	124069015	reg1008580.p2	4.043	+	TSC_hg19_v1_chr12_-_124068867 AK125282	-50	-	TSC_hg19_v1_chr12_-_124018501 AK096697	-50428	-	BC089444 TSC_hg19_v1_chr12_-_124018263 NM_178314	-50751	-	TSC_hg19_v1_chr12_+_124069077 NM_006815	140	+	TSC_hg19_v1_chr12_+_124069098 AK298167 AK312975 AK303189	164	+	TSC_hg19_v1_chr12_+_124069100 X92098 BC025957 CU693080 CR541663 CR541682	216	+	AK096697|RILPL1|353116|Rab interacting lysosomal protein-like 1##BC089444|RILPL1|353116|Rab interacting lysosomal protein-like 1##NM_178314|RILPL1|353116|Rab interacting lysosomal protein-like 1##NM_006815|TMED2|10959|transmembrane emp24 domain trafficking protein 2##AK298167|TMED2|10959|transmembrane emp24 domain trafficking protein 2##AK312975|TMED2|10959|transmembrane emp24 domain trafficking protein 2##AK303189|TMED2|10959|transmembrane emp24 domain trafficking protein 2##X92098|TMED2|10959|transmembrane emp24 domain trafficking protein 2##BC025957|TMED2|10959|transmembrane emp24 domain trafficking protein 2##CR541663|TMED2|10959|transmembrane emp24 domain trafficking protein 2##CR541682|TMED2|10959|transmembrane emp24 domain trafficking protein 2	0.0	0.0	
chr12	46378207	46378387	reg1000558.p1	4.043	+	AB463286 TSC_hg19_v1_chr12_-_46357972	-20337	-	TSC_hg19_v1_chr12_+_46123498 AB527360 AY727870 DQ096628 NM_152641 CR749833	-254700	+	TSC_hg19_v1_chr12_+_46123488 AK127872	-254814	+	BC017851 TSC_hg19_v1_chr12_-_46384277	5956	-	TSC_hg19_v1_chr12_-_46384319 AK302999	6028	-	AK096682 TSC_hg19_v1_chr12_-_46384348 AF030234	6050	-	AY727870|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##DQ096628|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##NM_152641|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##CR749833|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##AK127872|ARID2|196528|AT rich interactive domain 2 (ARID, RFX-like)##BC017851|SCAF11|9169|SR-related CTD-associated factor 11##AK302999|SCAF11|9169|SR-related CTD-associated factor 11##AK096682|SCAF11|9169|SR-related CTD-associated factor 11##AF030234|SCAF11|9169|SR-related CTD-associated factor 11	0.0	0.0	
chr12	68836269	68836449	reg1015459.p1	4.043	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-110253	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-189055	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-216807	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	168287	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	168336	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	168349	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.999128	0.0	denovo_WM_7:19:0.952
chr14	50160463	50160600	reg1006204.p2	4.043	+	BC101595 BC101597 BC143596 BC143597 NM_172193 AK098735 BC031270 AF111806 AK127202	-669	+	NM_001197330 NM_001197331 NM_002692 TSC_hg19_v1_chr14_-_50155123	-5412	-	AB590929 HQ258453 TSC_hg19_v1_chr14_-_50154933 BC112962 AK293163 AK314963 AF036899 BX248064 BC126218 BC126220	-5559	-	TSC_hg19_v1_chr14_+_50234282 AK056298	73772	+	TSC_hg19_v1_chr14_+_50234849 NM_014315 AF244137 BC002335 BC024192 AK001771 BX161429	74306	+	TSC_hg19_v1_chr14_+_50234917 AF113131	74390	+	BC101595|KLHDC1|122773|kelch domain containing 1##BC101597|KLHDC1|122773|kelch domain containing 1##BC143596|KLHDC1|122773|kelch domain containing 1##BC143597|KLHDC1|122773|kelch domain containing 1##NM_172193|KLHDC1|122773|kelch domain containing 1##BC031270|KLHDC1|122773|kelch domain containing 1##AF111806|KLHDC1|122773|kelch domain containing 1##AK127202|KLHDC1|122773|kelch domain containing 1##NM_001197330|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_001197331|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##NM_002692|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##HQ258453|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC112962|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK293163|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK314963|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AF036899|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BX248064|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC126218|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##BC126220|POLE2|5427|polymerase (DNA directed), epsilon 2 (p59 subunit)##AK056298|KLHDC2|23588|kelch domain containing 2##NM_014315|KLHDC2|23588|kelch domain containing 2##AF244137|KLHDC2|23588|kelch domain containing 2##BC002335|KLHDC2|23588|kelch domain containing 2##BC024192|KLHDC2|23588|kelch domain containing 2##AK001771|KLHDC2|23588|kelch domain containing 2##BX161429|KLHDC2|23588|kelch domain containing 2##AF113131|KLHDC2|23588|kelch domain containing 2	1.850633	0.0	denovo_WM_7:-56:0.455	denovo_WM_7:-57:0.454	denovo_WM_7:-73:0.858
chr16	14404916	14405096	reg1013426.p2	4.043	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-110808	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-124488	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-239920	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	319022	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	319127	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	321733	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	0.999245	0.0	
chr1	67680428	67680547	reg1014739.p2	4.043	+	AF461422 NM_144701	-48319	+	NM_001013674	-86268	-	TSC_hg19_v1_chr1_-_67520070 AK289800 NM_015139	-160434	-	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	92594	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	93076	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	215536	-	AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##NM_001013674|C1orf141|400757|chromosome 1 open reading frame 141##AK289800|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##NM_015139|SLC35D1|23169|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.985637	0.0	denovo_WM_7:6:0.617	denovo_WM_7:-25:0.340
chr16	87843369	87843490	reg1013323.p2	4.043	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-43859	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-43914	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-206719	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	59646	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	126718	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	141739	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.989075	0.0	denovo_WM_7:45:0.877
chr18	4405449	4405591	reg1019053.p1	4.043	+	AK294777 AK294717 NM_001242762 NM_001242763	-530793	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-531236	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-560190	-	AK304101 TSC_hg19_v1_chr18_-_4455255	49733	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	49750	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	791732	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.598038	0.0	denovo_WM_7:-1:0.394
chr7	107539785	107539907	reg1014322.p2	4.043	+	AK300077 TSC_hg19_v1_chr7_+_107531630 AK225289 AK310220 AB209703 BC018648 BC018696 J03620 AB529125 CU676276	-8190	+	J03490 TSC_hg19_v1_chr7_+_107531617 AK297508	-8230	+	AK294146 NM_000108 TSC_hg19_v1_chr7_+_107531614 AK312346 AK295080 AK225301	-8246	+	AB384752 TSC_hg19_v1_chr7_-_107643594 BC113455 M61916 BX648251 AK303501 AK309921 AK307611 BC044633 BC052598 NM_002291	103759	-	BC142619 BC140804 BC144591 AF028816 AK300385 NM_007356	230946	-	AJ001057 AB385311 NM_001037132	340706	-	AK300077|DLD|1738|dihydrolipoamide dehydrogenase##AK225289|DLD|1738|dihydrolipoamide dehydrogenase##AK310220|DLD|1738|dihydrolipoamide dehydrogenase##AB209703|DLD|1738|dihydrolipoamide dehydrogenase##BC018648|DLD|1738|dihydrolipoamide dehydrogenase##BC018696|DLD|1738|dihydrolipoamide dehydrogenase##J03620|DLD|1738|dihydrolipoamide dehydrogenase##J03490|DLD|1738|dihydrolipoamide dehydrogenase##AK297508|DLD|1738|dihydrolipoamide dehydrogenase##AK294146|DLD|1738|dihydrolipoamide dehydrogenase##NM_000108|DLD|1738|dihydrolipoamide dehydrogenase##AK312346|DLD|1738|dihydrolipoamide dehydrogenase##AK295080|DLD|1738|dihydrolipoamide dehydrogenase##AK225301|DLD|1738|dihydrolipoamide dehydrogenase##BC113455|LAMB1|3912|laminin, beta 1##M61916|LAMB1|3912|laminin, beta 1##BX648251|LAMB1|3912|laminin, beta 1##AK303501|LAMB1|3912|laminin, beta 1##AK309921|LAMB1|3912|laminin, beta 1##AK307611|LAMB1|3912|laminin, beta 1##BC044633|LAMB1|3912|laminin, beta 1##BC052598|LAMB1|3912|laminin, beta 1##NM_002291|LAMB1|3912|laminin, beta 1##BC142619|LAMB4|22798|laminin, beta 4##BC140804|LAMB4|22798|laminin, beta 4##BC144591|LAMB4|22798|laminin, beta 4##AF028816|LAMB4|22798|laminin, beta 4##AK300385|LAMB4|22798|laminin, beta 4##NM_007356|LAMB4|22798|laminin, beta 4##AJ001057|NRCAM|4897|neuronal cell adhesion molecule##NM_001037132|NRCAM|4897|neuronal cell adhesion molecule	0.0	0.0	
chr7	66594078	66594258	reg1014316.p1	4.043	+	TSC_hg19_v1_chr7_+_66461858 BC042156 NM_018264 AK001762 BC015591 BC051888	-132310	+	CU688080 TSC_hg19_v1_chr7_-_66460574 BC065700 AF151855 AK001779 AY169963 NM_016038 AK289609	-133668	-	TSC_hg19_v1_chr7_+_66386238 BC010519	-207897	+	TSC_hg19_v1_chr7_-_66767458 BC029419 D38438 D38500 BC029368 BC038841 BC056507	173260	-	TSC_hg19_v1_chr7_+_66767639 AK023257 AK308931	173440	+	TSC_hg19_v1_chr7_+_66767642 AK307290	173480	+	BC042156|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##NM_018264|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##AK001762|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC015591|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC051888|TYW1|55253|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)##BC065700|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AF151855|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK001779|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AY169963|SBDS|51119|Shwachman-Bodian-Diamond syndrome##NM_016038|SBDS|51119|Shwachman-Bodian-Diamond syndrome##AK289609|SBDS|51119|Shwachman-Bodian-Diamond syndrome##BC010519|C7orf42|55069|chromosome 7 open reading frame 42##BC029419|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38438|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##D38500|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC029368|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##BC038841|PMS2P4|5382|postmeiotic segregation increased 2 pseudogene 4##AK023257|STAG3L4|64940|stromal antigen 3-like 4##AK308931|STAG3L4|64940|stromal antigen 3-like 4##AK307290|STAG3L4|64940|stromal antigen 3-like 4	0.0	0.0	
chr12	133532897	133533022	reg1008104.p1	4.042	+	BC020877 TSC_hg19_v1_chr12_-_133532893 AL832191 NM_183238 AK027873 AK122878 AL832623 NM_001164715	-86	-	AK027687 TSC_hg19_v1_chr12_-_133464201 NM_001161344 NM_001161345 NM_001161346 NM_001161347 NM_018223	-68748	-	TSC_hg19_v1_chr12_-_133464153 AK001658 AK302785 AK304333 AF170724	-68787	-	TSC_hg19_v1_chr12_+_133563005 AK291243 BC046206 NM_019591	30039	+	NM_003428 TSC_hg19_v1_chr12_+_133613979 M27878 NM_001127372	80984	+	TSC_hg19_v1_chr12_+_133614094 BC062552 AK314232	81132	+	BC020877|ZNF605|100289635|zinc finger protein 605##AL832191|ZNF605|100289635|zinc finger protein 605##NM_183238|ZNF605|100289635|zinc finger protein 605##AK027873|ZNF605|100289635|zinc finger protein 605##AK122878|ZNF605|100289635|zinc finger protein 605##AL832623|ZNF605|100289635|zinc finger protein 605##NM_001164715|ZNF605|100289635|zinc finger protein 605##AK027687|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161344|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161345|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161346|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_001161347|CHFR|55743|checkpoint with forkhead and ring finger domains##NM_018223|CHFR|55743|checkpoint with forkhead and ring finger domains##AK001658|CHFR|55743|checkpoint with forkhead and ring finger domains##AK302785|CHFR|55743|checkpoint with forkhead and ring finger domains##AK304333|CHFR|55743|checkpoint with forkhead and ring finger domains##AF170724|CHFR|55743|checkpoint with forkhead and ring finger domains##AK291243|ZNF26|7574|zinc finger protein 26##BC046206|ZNF26|7574|zinc finger protein 26##NM_019591|ZNF26|7574|zinc finger protein 26##NM_003428|ZNF84|7637|zinc finger protein 84##M27878|ZNF84|7637|zinc finger protein 84##NM_001127372|ZNF84|7637|zinc finger protein 84##BC062552|ZNF84|7637|zinc finger protein 84##AK314232|ZNF84|7637|zinc finger protein 84	0.0	0.0	
chr15	45480465	45480645	reg1013496.p1	4.042	+	TSC_hg19_v1_chr15_-_45480165 AK094391 AK303749	-391	-	AK290372 AF213465 NM_017434 NM_175940 AK075268 AF230495 BC114628 BC114938	-58389	+	BC029819 NM_144565 AK292771 BC020841 TSC_hg19_v1_chr15_-_45422078 AK056896	-58487	-	AK096267 NM_138356	12817	-	AK222709 NM_004212 U84392 AK291974	63886	+	TSC_hg19_v1_chr15_-_45670743 CU678590 S68805 BC004141 AK098055 AK223585 AK294995 AK298350	190184	-	AK094391|SHF|90525|Src homology 2 domain containing F##AK303749|SHF|90525|Src homology 2 domain containing F##AK290372|DUOX1|53905|dual oxidase 1##AF213465|DUOX1|53905|dual oxidase 1##NM_017434|DUOX1|53905|dual oxidase 1##NM_175940|DUOX1|53905|dual oxidase 1##AK075268|DUOX1|53905|dual oxidase 1##AF230495|DUOX1|53905|dual oxidase 1##BC114628|DUOX1|53905|dual oxidase 1##BC114938|DUOX1|53905|dual oxidase 1##BC029819|DUOXA1|90527|dual oxidase maturation factor 1##NM_144565|DUOXA1|90527|dual oxidase maturation factor 1##AK292771|DUOXA1|90527|dual oxidase maturation factor 1##BC020841|DUOXA1|90527|dual oxidase maturation factor 1##AK056896|DUOXA1|90527|dual oxidase maturation factor 1##AK096267|SHF|90525|Src homology 2 domain containing F##NM_138356|SHF|90525|Src homology 2 domain containing F##AK222709|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##NM_004212|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##U84392|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##AK291974|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##S68805|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##BC004141|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK098055|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK223585|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK294995|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK298350|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	0.0	0.0	
chr16	86045187	86045327	reg1011447.p1	4.042	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	-112471	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-211922	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-211952	+	TSC_hg19_v1_chr16_-_86542463 AK091834	497207	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	498899	+	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	498983	+	NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1	0.804709	0.0	denovo_WM_7:-66:0.564
chr1	9889493	9889616	reg1017280.p1	4.042	+	AF438482 NM_001009566 NM_014944 AB020718	-4988	-	TSC_hg19_v1_chr1_-_9884024 BC033902	-5510	-	TSC_hg19_v1_chr1_-_9884023 AK304813	-5533	-	TSC_hg19_v1_chr1_-_9970314 AB021262 BC035794 BC014300 NM_001012329 NM_020248	80755	-	BC063443 NM_032368	113271	-	TSC_hg19_v1_chr1_-_10003358 AB060688 BC007240 AK304348 AK312550	113819	-	AF438482|CLSTN1|22883|calsyntenin 1##NM_001009566|CLSTN1|22883|calsyntenin 1##NM_014944|CLSTN1|22883|calsyntenin 1##AB020718|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##AB021262|CTNNBIP1|56998|catenin, beta interacting protein 1##BC014300|CTNNBIP1|56998|catenin, beta interacting protein 1##NM_001012329|CTNNBIP1|56998|catenin, beta interacting protein 1##NM_020248|CTNNBIP1|56998|catenin, beta interacting protein 1##BC063443|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##NM_032368|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AB060688|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC007240|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK304348|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK312550|LZIC|84328|leucine zipper and CTNNBIP1 domain containing	0.996143	0.0	
chr2	95744265	95744360	reg1015023.p2	4.042	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	-52830	+	AK097438 BC021716 NM_144705 AK296678 CU692394	-207062	+	TSC_hg19_v1_chr2_-_91847997 BC030764	-3896309	-	TSC_hg19_v1_chr2_-_95787546 CU680814 DQ892620 DQ895860 AK058160 AK295812	43230	-	AB049940 TSC_hg19_v1_chr2_-_95787749 BC014172 NM_031902	43400	-	AK027363 NM_032788	80950	-	BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##DQ892620|MRPS5|64969|mitochondrial ribosomal protein S5##DQ895860|MRPS5|64969|mitochondrial ribosomal protein S5##AK058160|MRPS5|64969|mitochondrial ribosomal protein S5##AB049940|MRPS5|64969|mitochondrial ribosomal protein S5##BC014172|MRPS5|64969|mitochondrial ribosomal protein S5##NM_031902|MRPS5|64969|mitochondrial ribosomal protein S5##AK027363|ZNF514|84874|zinc finger protein 514##NM_032788|ZNF514|84874|zinc finger protein 514	0.999814	0.0	denovo_WM_7:0:0.897
chr5	67665480	67665586	reg1012057.p1	4.042	+	AK094785 NM_001242466 AK294919	-77081	+	NM_181504 AK223613 BC030815 U49349 CU689026 AK126345	-78987	+	AF279367 NM_181524 TSC_hg19_v1_chr5_+_67584336 AK000121	-81239	+	NM_001251969 NM_022902 NM_024055 BC017441 TSC_hg19_v1_chr5_+_68389821	724270	+	TSC_hg19_v1_chr5_+_68389892 AY358505 AF461760	724349	+	AK292925 TSC_hg19_v1_chr5_+_68389913	724380	+	AK094785|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001242466|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK294919|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181504|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK223613|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##BC030815|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##U49349|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK126345|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AF279367|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_181524|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##AK000121|PIK3R1|5295|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)##NM_001251969|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_022902|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##NM_024055|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##BC017441|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AY358505|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AF461760|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5##AK292925|SLC30A5|64924|solute carrier family 30 (zinc transporter), member 5	0.104824	0.0	
chr6	15359793	15359955	reg1017979.p1	4.042	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-110761	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-110973	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-113462	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	303303	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	303416	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	769428	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	0.994666	0.0	denovo_WM_7:79:0.359	denovo_WM_7:80:0.340
chr6	68769875	68770032	reg1011718.p2	4.042	+	TSC_hg19_v1_chr6_-_68599062 BC065770 AJ431196 BC021996 BC107867 BC014322	-170925	-	FM209056 AB593112 AB593114 BX647741 BX537914 FJ416331 NM_001142800 NM_001142801	-2352860	-	AY358133 NM_198283 AK310478	-2480248	-	AL833240 TSC_hg19_v1_chr6_-_69345026	575019	-	TSC_hg19_v1_chr6_+_69345227 NM_001704 AB011122 AK289696	575448	+	TSC_hg19_v1_chr6_-_70506472 AB074281	1736524	-	AJ431196|ERVH-3|100289683|endogenous retrovirus group H, member 3##FM209056|EYS|346007|eyes shut homolog (Drosophila)##AB593112|EYS|346007|eyes shut homolog (Drosophila)##AB593114|EYS|346007|eyes shut homolog (Drosophila)##BX647741|EYS|346007|eyes shut homolog (Drosophila)##BX537914|EYS|346007|eyes shut homolog (Drosophila)##FJ416331|EYS|346007|eyes shut homolog (Drosophila)##NM_001142800|EYS|346007|eyes shut homolog (Drosophila)##NM_001142801|EYS|346007|eyes shut homolog (Drosophila)##AY358133|EYS|346007|eyes shut homolog (Drosophila)##NM_198283|EYS|346007|eyes shut homolog (Drosophila)##AK310478|EYS|346007|eyes shut homolog (Drosophila)##NM_001704|BAI3|577|brain-specific angiogenesis inhibitor 3##AB011122|BAI3|577|brain-specific angiogenesis inhibitor 3##AK289696|BAI3|577|brain-specific angiogenesis inhibitor 3##AB074281|LMBRD1|55788|LMBR1 domain containing 1	0.635137	0.0	denovo_WM_7:-50:0.492
chr8	8141364	8141504	reg1006918.p1	4.042	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-55292	+	AK292586 NM_001193630	-357576	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-389230	+	TSC_hg19_v1_chr8_-_8175862 AF075060	34454	-	AK122582 NM_001080826	97788	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	418264	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	0.0	0.0	
chr17	45282952	45283073	reg1014633.p1	4.041	+	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	-16328	-	TSC_hg19_v1_chr17_-_45266641 AK299342	-16373	-	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	-16434	-	NM_001002841 X52005	3438	+	NM_002476 TSC_hg19_v1_chr17_+_45286713 BC030228 M24121 M36172 X13955 AB528188 AM392523 AM392536 AM392902 AM393643 AM393677	3738	+	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	48172	+	NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001002841|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X52005|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##NM_002476|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC030228|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M24121|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M36172|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X13955|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392523|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392536|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392902|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393643|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393677|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	0.0	0.0	
chr19	42462052	42462169	reg1016515.p1	4.041	+	NM_199002 TSC_hg19_v1_chr19_+_42388510 BC034013 BC067262	-73624	+	TSC_hg19_v1_chr19_+_42387309 U64105	-74792	+	BC064996 TSC_hg19_v1_chr19_+_42387266 NM_004706 NM_198977 BC011726	-74833	+	AF112996 BT019964 CR457214 CR542116 AB590878 AF112202 AJ133534 BC008950 TSC_hg19_v1_chr19_-_42463499	1358	-	TSC_hg19_v1_chr19_-_42463500 NM_006423	1410	-	AK295833 TSC_hg19_v1_chr19_-_42498254	36127	-	NM_199002|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC034013|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC067262|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##U64105|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC064996|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_004706|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##NM_198977|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC011726|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##AF112996|RABAC1|10567|Rab acceptor 1 (prenylated)##BT019964|RABAC1|10567|Rab acceptor 1 (prenylated)##CR457214|RABAC1|10567|Rab acceptor 1 (prenylated)##CR542116|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112202|RABAC1|10567|Rab acceptor 1 (prenylated)##AJ133534|RABAC1|10567|Rab acceptor 1 (prenylated)##BC008950|RABAC1|10567|Rab acceptor 1 (prenylated)##NM_006423|RABAC1|10567|Rab acceptor 1 (prenylated)##AK295833|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide	0.0	0.063698	
chr2	125633250	125633360	reg1008347.p1	4.041	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-850441	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-3120068	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-3138840	-	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	1780402	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	1780487	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	2231436	-	AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1	2.237642	0.0	denovo_WM_7:-1:0.786	denovo_WM_7:-19:0.322	denovo_WM_7:-20:0.322	denovo_WM_7:-21:0.323	denovo_WM_7:-75:0.286
chr4	39633735	39633833	reg1001506.p2	4.041	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-104158	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-104609	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-104777	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	6772	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	66020	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	345554	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.155903	0.0	
chr6	144675287	144675451	reg1010918.p1	4.041	+	NM_007124 X69086	-62451	+	TSC_hg19_v1_chr6_+_144607461 AK292506	-67889	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-203648	+	AK124757 TSC_hg19_v1_chr6_+_146056061	1380665	+	TSC_hg19_v1_chr6_-_146056437 AJ130763 AJ130764	1381044	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	1381232	-	NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK292506|UTRN|7402|utrophin##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK124757|LOC100507557|100507557|uncharacterized LOC100507557##AJ130763|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AJ130764|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	0.0	0.0	
chr8	38039461	38039586	reg1009988.p2	4.041	+	TSC_hg19_v1_chr8_+_38034377 AF111116	-5135	+	TSC_hg19_v1_chr8_+_38034355 BC038505 AK304072 AK314020 AF095194	-5198	+	TSC_hg19_v1_chr8_-_38034212 NM_014462	-5294	-	NM_001164234 NM_015214 TSC_hg19_v1_chr8_+_38089102 AK056525	49560	+	TSC_hg19_v1_chr8_+_38089233 AK125904 NM_001164232	49794	+	BC033025 AK292118 TSC_hg19_v1_chr8_-_38126733 AF212238 BC106014 NM_001102559 NM_001102560 NM_032483	87193	-	AF111116|BAG4|9530|BCL2-associated athanogene 4##BC038505|BAG4|9530|BCL2-associated athanogene 4##AK304072|BAG4|9530|BCL2-associated athanogene 4##AK314020|BAG4|9530|BCL2-associated athanogene 4##AF095194|BAG4|9530|BCL2-associated athanogene 4##NM_014462|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001164234|DDHD2|23259|DDHD domain containing 2##NM_015214|DDHD2|23259|DDHD domain containing 2##AK056525|DDHD2|23259|DDHD domain containing 2##AK125904|DDHD2|23259|DDHD domain containing 2##NM_001164232|DDHD2|23259|DDHD domain containing 2##BC033025|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AK292118|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##AF212238|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##BC106014|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_001102559|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_001102560|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B##NM_032483|PPAPDC1B|84513|phosphatidic acid phosphatase type 2 domain containing 1B	0.997253	0.0	denovo_WM_7:-95:0.266	denovo_WM_7:-96:0.717
chr8	61431155	61431278	reg1014411.p1	4.041	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-1466	+	TSC_hg19_v1_chr8_+_61429570 X12953 BC008929	-1652	+	TSC_hg19_v1_chr8_+_61429545 AK312344	-1670	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	160072	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	160186	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	769334	+	M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##X12953|RAB2A|5862|RAB2A, member RAS oncogene family##BC008929|RAB2A|5862|RAB2A, member RAS oncogene family##AK312344|RAB2A|5862|RAB2A, member RAS oncogene family##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1	1.246323	0.0	
chr8	8473077	8473217	reg1015353.p1	4.041	+	AK122582 NM_001080826	-233925	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-297259	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-387005	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	86551	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	277791	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	387218	+	AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1	0.0	0.0	
chr8	90741445	90741536	reg1000649.p1	4.041	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1401744	-	BC035011 AL833507 BC111778 AK093094 AX747918 NM_152418	-1855231	-	AK093121 AX747937 BC117326 BC117328 NM_173538	-2862817	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	28540	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	28794	+	AF061326 NM_004337	172605	+	AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##BC035011|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AL833507|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##BC111778|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093094|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##NM_152418|DCAF4L2|138009|DDB1 and CUL4 associated factor 4-like 2##AK093121|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117326|CNBD1|168975|cyclic nucleotide binding domain containing 1##BC117328|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_173538|CNBD1|168975|cyclic nucleotide binding domain containing 1##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2	0.0	0.0	
chr1	165820344	165820498	reg1013717.p2	4.040	+	AF236637 AK294537 TSC_hg19_v1_chr1_+_165797063 AB062451	-23335	+	TSC_hg19_v1_chr1_+_165796794 NM_012474 BC002906	-23650	+	AK124964 BC009228 TSC_hg19_v1_chr1_+_165738255 BC071770	-82200	+	TSC_hg19_v1_chr1_-_166135951 NM_001017961	315533	-	TSC_hg19_v1_chr1_-_166135982 AB593134	315564	-	TSC_hg19_v1_chr1_-_166136076 BC114214	315719	-	AF236637|UCK2|7371|uridine-cytidine kinase 2##AK294537|UCK2|7371|uridine-cytidine kinase 2##AB062451|UCK2|7371|uridine-cytidine kinase 2##NM_012474|UCK2|7371|uridine-cytidine kinase 2##BC002906|UCK2|7371|uridine-cytidine kinase 2##AK124964|LOC100147773|100147773|uncharacterized LOC100147773##BC009228|LOC100147773|100147773|uncharacterized LOC100147773##BC071770|LOC100147773|100147773|uncharacterized LOC100147773##NM_001017961|FAM78B|149297|family with sequence similarity 78, member B##BC114214|FAM78B|149297|family with sequence similarity 78, member B	0.0	0.0	
chr1	204450070	204450250	reg1001923.p1	4.040	+	TSC_hg19_v1_chr1_-_204380946 BC065280 AK222877 NM_032833 AK027650 AK303535 AK316092	-69220	-	TSC_hg19_v1_chr1_+_204380508 BC009873	-69639	+	AB023186 BC152475 NM_014935 TSC_hg19_v1_chr1_-_204329058	-121110	-	BC132876 BC136645 BC144342 NM_002646 AK308153	9338	-	TSC_hg19_v1_chr1_-_204463934 BC094741	13605	-	TSC_hg19_v1_chr1_+_204485540 NM_001204171 NM_001204172 NM_002393 BC025993 CR749470 BC067299 AK303626 AK304698 AK310903 BX640923 AK223228	35342	+	BC065280|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK222877|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##NM_032833|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK027650|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AK303535|PPP1R15B|84919|protein phosphatase 1, regulatory subunit 15B##AB023186|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC152475|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##NM_014935|PLEKHA6|22874|pleckstrin homology domain containing, family A member 6##BC132876|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC136645|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC144342|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_002646|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##AK308153|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##BC094741|PIK3C2B|5287|phosphoinositide-3-kinase, class 2, beta polypeptide##NM_001204171|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_001204172|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##NM_002393|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC025993|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##CR749470|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BC067299|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK303626|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK304698|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK310903|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##BX640923|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)##AK223228|MDM4|4194|Mdm4 p53 binding protein homolog (mouse)	0.0	0.0	
chr17	63519620	63519733	reg1014667.p2	4.040	+	TSC_hg19_v1_chr17_+_63133501 AK309061 AK290535 BC022504 AK301719 AF071476 AK289876 AF493933 AY585191	-386097	+	NM_001081955 NM_001165933 NM_003835 TSC_hg19_v1_chr17_+_63133479	-386206	+	TSC_hg19_v1_chr17_-_63052903 AK301699 NM_006572	-466775	-	BC006295 TSC_hg19_v1_chr17_-_63556453	36799	-	TSC_hg19_v1_chr17_-_63557659 AK315303 NM_004655	38003	-	CR933657 TSC_hg19_v1_chr17_-_63557767	38092	-	AK309061|RGS9|8787|regulator of G-protein signaling 9##AK290535|RGS9|8787|regulator of G-protein signaling 9##BC022504|RGS9|8787|regulator of G-protein signaling 9##AK301719|RGS9|8787|regulator of G-protein signaling 9##AF071476|RGS9|8787|regulator of G-protein signaling 9##AK289876|RGS9|8787|regulator of G-protein signaling 9##AF493933|RGS9|8787|regulator of G-protein signaling 9##AY585191|RGS9|8787|regulator of G-protein signaling 9##NM_001081955|RGS9|8787|regulator of G-protein signaling 9##NM_001165933|RGS9|8787|regulator of G-protein signaling 9##NM_003835|RGS9|8787|regulator of G-protein signaling 9##AK301699|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##NM_006572|GNA13|10672|guanine nucleotide binding protein (G protein), alpha 13##BC006295|AXIN2|8313|axin 2##AK315303|AXIN2|8313|axin 2##NM_004655|AXIN2|8313|axin 2##CR933657|AXIN2|8313|axin 2	1.999329	0.0	
chr21	45200875	45200990	reg1009623.p2	4.040	+	TSC_hg19_v1_chr21_-_45196227 BC010532 L03558 NM_000100	-4703	-	BT007040 CR542148 DQ890923 DQ894073 TSC_hg19_v1_chr21_-_45196190 AK312133 BC003370	-4761	-	AL110184 TSC_hg19_v1_chr21_+_45178006	-22998	+	TSC_hg19_v1_chr21_+_45209429 NM_003683	8483	+	TSC_hg19_v1_chr21_+_45209457 AK223185 AK303000 AK223215 AK313116 BC000380 U79775 CU674182 DQ891391 DQ894567 BC014787	8553	+	TSC_hg19_v1_chr21_+_45285029 AY358704	84128	+	BC010532|CSTB|1476|cystatin B (stefin B)##L03558|CSTB|1476|cystatin B (stefin B)##NM_000100|CSTB|1476|cystatin B (stefin B)##BT007040|CSTB|1476|cystatin B (stefin B)##CR542148|CSTB|1476|cystatin B (stefin B)##DQ890923|CSTB|1476|cystatin B (stefin B)##DQ894073|CSTB|1476|cystatin B (stefin B)##AK312133|CSTB|1476|cystatin B (stefin B)##BC003370|CSTB|1476|cystatin B (stefin B)##AL110184|PDXK|8566|pyridoxal (pyridoxine, vitamin B6) kinase##NM_003683|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223185|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK303000|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK223215|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AK313116|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC000380|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##U79775|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ891391|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##DQ894567|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##BC014787|RRP1|8568|ribosomal RNA processing 1 homolog (S. cerevisiae)##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3	0.989508	0.0	denovo_WM_7:52:0.490	denovo_WM_7:53:0.285	denovo_WM_7:54:0.214
chr3	150103966	150104107	reg1002537.p4	4.040	+	BC012363 TSC_hg19_v1_chr3_+_149689094	-414956	+	TSC_hg19_v1_chr3_-_149688960 BC043646	-415107	-	TSC_hg19_v1_chr3_-_149688683 AB464068 AF228738 EU832616 EU832688 AK311782 L10678 BC002964 BC095444 AK307227 AK311780 BC018049 AK297915 NM_002628 NM_053024	-415340	-	TSC_hg19_v1_chr3_+_150126084 AK297383 AB014569	22036	+	TSC_hg19_v1_chr3_+_150126774 BC044643 NM_014779	22727	+	X75694 CR533472 TSC_hg19_v1_chr3_-_150264030	159934	-	BC012363|LOC646903|646903|uncharacterized LOC646903##BC043646|PFN2|5217|profilin 2##AF228738|PFN2|5217|profilin 2##EU832616|PFN2|5217|profilin 2##EU832688|PFN2|5217|profilin 2##AK311782|PFN2|5217|profilin 2##L10678|PFN2|5217|profilin 2##BC002964|PFN2|5217|profilin 2##BC095444|PFN2|5217|profilin 2##AK307227|PFN2|5217|profilin 2##AK311780|PFN2|5217|profilin 2##BC018049|PFN2|5217|profilin 2##AK297915|PFN2|5217|profilin 2##NM_002628|PFN2|5217|profilin 2##NM_053024|PFN2|5217|profilin 2##AK297383|TSC22D2|9819|TSC22 domain family, member 2##AB014569|TSC22D2|9819|TSC22 domain family, member 2##BC044643|TSC22D2|9819|TSC22 domain family, member 2##NM_014779|TSC22D2|9819|TSC22 domain family, member 2##X75694|SERP1|27230|stress-associated endoplasmic reticulum protein 1##CR533472|SERP1|27230|stress-associated endoplasmic reticulum protein 1	0.997495	0.0	
chr8	38242811	38242923	reg1010192.p2	4.040	+	TSC_hg19_v1_chr8_-_38239790 AF332468 AF332469 NM_017778 NM_023034 BC000030	-3071	-	AK022560 TSC_hg19_v1_chr8_-_38239782 AJ295990 AJ295991 AJ295992 BC062631 BC012059 AF255649 BC007787	-3241	-	TSC_hg19_v1_chr8_-_38239339 BC101717 BC113469 BC143510 BC115006 BC115007	-3514	-	NM_001199659 NM_144652 TSC_hg19_v1_chr8_+_38244011 AK289944 AK058138 AK302317 BC069830 AL832241 AY173945 AK302474	1143	+	BC024250 NM_001199660	1780	+	AK291754 AK309947 AK292470 NM_001174065 NM_001174066 NM_001174067	82434	-	AF332468|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF332469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_017778|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_023034|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC000030|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AK022560|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295990|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295991|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295992|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC062631|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC012059|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF255649|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC007787|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC101717|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC113469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC143510|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115006|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115007|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_001199659|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##NM_144652|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK289944|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK058138|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK302317|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##BC069830|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AL832241|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AY173945|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK302474|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##BC024250|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##NM_001199660|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK291754|FGFR1|2260|fibroblast growth factor receptor 1##AK309947|FGFR1|2260|fibroblast growth factor receptor 1##AK292470|FGFR1|2260|fibroblast growth factor receptor 1##NM_001174065|FGFR1|2260|fibroblast growth factor receptor 1##NM_001174066|FGFR1|2260|fibroblast growth factor receptor 1##NM_001174067|FGFR1|2260|fibroblast growth factor receptor 1	0.422351	0.0	denovo_WM_7:46:0.292
chrUn_gl000211	28275	28455	reg1019919.p1	4.040	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chrX	80457180	80457296	reg1007578.p1	4.040	+	BC111490 AY497046 AY497048 AY497049 AY497050 AY497051 AY497052 AY497053 AY497054 AY497055 NM_153252	-392031	-	BX537938 NM_152630 BC030784 AK313875 BC028710 BC034979	-781276	+	AK128147 NM_001170574	-866236	+	NM_003022 AK024892 AK309350 BC103762 TSC_hg19_v1_chrX_+_80457495	165	+	AK094058 AX748432 NM_030763	202	-	TSC_hg19_v1_chrX_+_80457572 AK309351	338	+	BC111490|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497046|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497048|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497049|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497050|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497051|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497052|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497053|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497054|BRWD3|254065|bromodomain and WD repeat domain containing 3##AY497055|BRWD3|254065|bromodomain and WD repeat domain containing 3##NM_153252|BRWD3|254065|bromodomain and WD repeat domain containing 3##BX537938|FAM46D|169966|family with sequence similarity 46, member D##NM_152630|FAM46D|169966|family with sequence similarity 46, member D##BC030784|FAM46D|169966|family with sequence similarity 46, member D##AK313875|FAM46D|169966|family with sequence similarity 46, member D##BC028710|FAM46D|169966|family with sequence similarity 46, member D##BC034979|FAM46D|169966|family with sequence similarity 46, member D##AK128147|FAM46D|169966|family with sequence similarity 46, member D##NM_001170574|FAM46D|169966|family with sequence similarity 46, member D##NM_003022|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK024892|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK309350|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##BC103762|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like##AK094058|HMGN5|79366|high mobility group nucleosome binding domain 5##NM_030763|HMGN5|79366|high mobility group nucleosome binding domain 5##AK309351|SH3BGRL|6451|SH3 domain binding glutamic acid-rich protein like	0.0	0.0	
chr10	73759757	73759912	reg1016931.p1	4.039	+	TSC_hg19_v1_chr10_+_73723993 AB017915 NM_004273 AB012192	-35777	+	TSC_hg19_v1_chr10_-_73611059 NM_001042465 NM_001042466 NM_002778	-148743	-	AK299184 TSC_hg19_v1_chr10_-_73611043	-148791	-	AK292328 TSC_hg19_v1_chr10_-_73848270 AK294008 AK307091	88434	-	TSC_hg19_v1_chr10_-_73848286 AY358921	88448	-	TSC_hg19_v1_chr10_-_73848310 AJ001453	88506	-	AB017915|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_004273|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##AB012192|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_001042465|PSAP|5660|prosaposin##NM_001042466|PSAP|5660|prosaposin##NM_002778|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin##AK292328|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK294008|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK307091|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AY358921|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	0.01223	0.0	
chr11	120939074	120939195	reg1016255.p2	4.039	+	TSC_hg19_v1_chr11_+_120894810 AK313324 NM_001130047 NM_152715 AK295673 AK295825 BC020501 AK024239 AY398644	-44324	+	AB384776 NM_014619 S67803	-408107	+	TSC_hg19_v1_chr11_+_120382461 AK292726 AB231709	-556669	+	NM_005422	34240	+	TSC_hg19_v1_chr11_+_121163397 NM_006918 AK312634	224271	+	TSC_hg19_v1_chr11_+_121163484 AK096847 AK223141 AK222686	224348	+	AK313324|TBCEL|219899|tubulin folding cofactor E-like##NM_001130047|TBCEL|219899|tubulin folding cofactor E-like##NM_152715|TBCEL|219899|tubulin folding cofactor E-like##AK295673|TBCEL|219899|tubulin folding cofactor E-like##BC020501|TBCEL|219899|tubulin folding cofactor E-like##AK024239|TBCEL|219899|tubulin folding cofactor E-like##AY398644|TBCEL|219899|tubulin folding cofactor E-like##NM_014619|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##S67803|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AK292726|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##AB231709|GRIK4|2900|glutamate receptor, ionotropic, kainate 4##NM_005422|TECTA|7007|tectorin alpha##NM_006918|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK312634|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK096847|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK223141|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like##AK222686|SC5DL|6309|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like	1.095993	0.0	denovo_WM_7:-32:0.580	denovo_WM_7:-34:0.373
chr1	27070310	27070386	reg1012590.p1	4.039	+	AB210022 AF219114 AB051293 AF265208 TSC_hg19_v1_chr1_+_27024003	-46379	+	NM_006015 NM_139135 AF231056	-47826	+	AK292722 NM_001006665 TSC_hg19_v1_chr1_+_26872346	-197990	+	TSC_hg19_v1_chr1_+_27101218 AK074940 AK308363	30940	+	TSC_hg19_v1_chr1_+_27114455 NM_017837 BC013568	44108	+	AK000484 AK225521 AK301626 NM_001202554 AK056539	44333	+	AB210022|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF219114|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF265208|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_006015|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_139135|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AF231056|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK292722|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##NM_001006665|RPS6KA1|6195|ribosomal protein S6 kinase, 90kDa, polypeptide 1##AK074940|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##AK308363|ARID1A|8289|AT rich interactive domain 1A (SWI-like)##NM_017837|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##BC013568|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK000484|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK225521|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK301626|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##NM_001202554|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V##AK056539|PIGV|55650|phosphatidylinositol glycan anchor biosynthesis, class V	0.99378	0.0	denovo_WM_7:-60:0.248	denovo_WM_7:-61:0.248	denovo_WM_7:-62:0.248	denovo_WM_7:-63:0.248
chr14	45436195	45436303	reg1017270.p1	4.039	+	TSC_hg19_v1_chr14_+_45431421 AK295185 AB007883 CR749557 NM_015091 BC057255 AK096934 AK311034 AK307722 BX648723	-4841	+	TSC_hg19_v1_chr14_-_45431142 AK289855 NM_017658	-5099	-	BC121009 BC121010 TSC_hg19_v1_chr14_-_45431102	-5153	-	TSC_hg19_v1_chr14_+_45553323 NM_017922 AK308415 BC028683 AK307530 AK000673 BC125126 BC125127	117060	+	AB528407 BT006904 CU677595 DQ890734 DQ891132 DQ893906 DQ894311 TSC_hg19_v1_chr14_-_45603667	167413	-	TSC_hg19_v1_chr14_-_45603685 AK311915 BC020809 M90820 AK222993 M96256 NM_002013	167457	-	AK295185|FAM179B|23116|family with sequence similarity 179, member B##AB007883|FAM179B|23116|family with sequence similarity 179, member B##CR749557|FAM179B|23116|family with sequence similarity 179, member B##NM_015091|FAM179B|23116|family with sequence similarity 179, member B##BC057255|FAM179B|23116|family with sequence similarity 179, member B##AK096934|FAM179B|23116|family with sequence similarity 179, member B##AK311034|FAM179B|23116|family with sequence similarity 179, member B##BX648723|FAM179B|23116|family with sequence similarity 179, member B##AK289855|KLHL28|54813|kelch-like 28 (Drosophila)##NM_017658|KLHL28|54813|kelch-like 28 (Drosophila)##BC121009|KLHL28|54813|kelch-like 28 (Drosophila)##BC121010|KLHL28|54813|kelch-like 28 (Drosophila)##NM_017922|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK308415|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC028683|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK307530|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##AK000673|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC125126|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BC125127|PRPF39|55015|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)##BT006904|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ890734|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ891132|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ893906|FKBP3|2287|FK506 binding protein 3, 25kDa##DQ894311|FKBP3|2287|FK506 binding protein 3, 25kDa##AK311915|FKBP3|2287|FK506 binding protein 3, 25kDa##BC020809|FKBP3|2287|FK506 binding protein 3, 25kDa##AK222993|FKBP3|2287|FK506 binding protein 3, 25kDa##M96256|FKBP3|2287|FK506 binding protein 3, 25kDa##NM_002013|FKBP3|2287|FK506 binding protein 3, 25kDa	1.02467	0.0	denovo_WM_7:-32:0.248	denovo_WM_7:-82:0.200
chr15	52671063	52671243	reg1002730.p2	4.039	+	AF272390 BC144611 BC064841 TSC_hg19_v1_chr15_-_52587968 AK301079 AK304136 NM_018728	-83219	-	AF161352 TSC_hg19_v1_chr15_-_52529707	-141447	-	NM_016194	-187589	-	TSC_hg19_v1_chr15_-_52821078 AB290180 AK303660 AK307600 NM_000259 NM_001142495 U90942 Y07759	150103	-	AK123616 TSC_hg19_v1_chr15_-_52861045 AJ223091 CR457132 AK311751	189906	-	TSC_hg19_v1_chr15_-_52861228 AF084555 BC003418 NM_006628	190079	-	AF272390|MYO5C|55930|myosin VC##BC144611|MYO5C|55930|myosin VC##BC064841|MYO5C|55930|myosin VC##AK301079|MYO5C|55930|myosin VC##AK304136|MYO5C|55930|myosin VC##NM_018728|MYO5C|55930|myosin VC##AF161352|MYO5C|55930|myosin VC##NM_016194|GNB5|10681|guanine nucleotide binding protein (G protein), beta 5##AB290180|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK303660|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK307600|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_000259|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##NM_001142495|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##U90942|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##Y07759|MYO5A|4644|myosin VA (heavy chain 12, myoxin)##AK123616|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AJ223091|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##CR457132|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AK311751|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##AF084555|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##BC003418|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa##NM_006628|ARPP19|10776|cAMP-regulated phosphoprotein, 19kDa	0.0	0.0	
chr6	26172213	26172319	reg1002959.p1	4.039	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-13902	+	NM_005321 TSC_hg19_v1_chr6_+_26156558 BC096168 BC096169 BC096170 BC099632 EF065554 EF065555	-15668	+	TSC_hg19_v1_chr6_+_26156555 BC055095 AK313681	-15712	+	BC101748 BC101750 EU446967 NM_003523	11724	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	17056	-	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	25230	-	NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##NM_005321|HIST1H1E|3008|histone cluster 1, H1e##BC096168|HIST1H1E|3008|histone cluster 1, H1e##BC096169|HIST1H1E|3008|histone cluster 1, H1e##BC096170|HIST1H1E|3008|histone cluster 1, H1e##BC099632|HIST1H1E|3008|histone cluster 1, H1e##EF065554|HIST1H1E|3008|histone cluster 1, H1e##EF065555|HIST1H1E|3008|histone cluster 1, H1e##AK313681|HIST1H1E|3008|histone cluster 1, H1e##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d	0.0	0.260637	CTCF.p2:100:0.261
chr8	134263093	134263217	reg1018857.p2	4.039	+	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-59825	+	NM_001045556 NM_001045557	-147846	-	AJ238591 TSC_hg19_v1_chr8_-_134087273 AK310108 AK310115	-175883	-	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	46342	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	320942	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1445639	-	AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##AJ238591|SLA|6503|Src-like-adaptor##AK310108|SLA|6503|Src-like-adaptor##AK310115|SLA|6503|Src-like-adaptor##AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.998892	0.0	
chr10	105050951	105051087	reg1013936.p2	4.038	+	TSC_hg19_v1_chr10_+_105037444 AB209785	-13565	+	TSC_hg19_v1_chr10_+_105036894 BC006359 NM_032727 S78296 DQ892733 DQ895980	-14146	+	BC157875 BC171885 NM_001143909 BC137242 BC137243 BC157829 BC171806	-45346	+	CU675723 AB587453 EU446621 EU447006 TSC_hg19_v1_chr10_-_105110840 BC007602 AB047006 AK027885	59813	-	AK290679 TSC_hg19_v1_chr10_-_105110844	59841	-	BC010235 NM_001011663 NM_032154 TSC_hg19_v1_chr10_-_105110895	59874	-	AB209785|INA|9118|internexin neuronal intermediate filament protein, alpha##BC006359|INA|9118|internexin neuronal intermediate filament protein, alpha##NM_032727|INA|9118|internexin neuronal intermediate filament protein, alpha##S78296|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ892733|INA|9118|internexin neuronal intermediate filament protein, alpha##DQ895980|INA|9118|internexin neuronal intermediate filament protein, alpha##BC157875|LOC729020|729020|rcRPE##BC171885|LOC729020|729020|rcRPE##NM_001143909|LOC729020|729020|rcRPE##BC137242|LOC729020|729020|rcRPE##BC137243|LOC729020|729020|rcRPE##BC157829|LOC729020|729020|rcRPE##BC171806|LOC729020|729020|rcRPE##EU446621|PCGF6|84108|polycomb group ring finger 6##EU447006|PCGF6|84108|polycomb group ring finger 6##BC007602|PCGF6|84108|polycomb group ring finger 6##AB047006|PCGF6|84108|polycomb group ring finger 6##AK027885|PCGF6|84108|polycomb group ring finger 6##AK290679|PCGF6|84108|polycomb group ring finger 6##BC010235|PCGF6|84108|polycomb group ring finger 6##NM_001011663|PCGF6|84108|polycomb group ring finger 6##NM_032154|PCGF6|84108|polycomb group ring finger 6	0.998892	0.0	
chr1	182537930	182538025	reg1012103.p1	4.038	+	NM_001137669 AK302768 BC142944 AL136902	-118704	+	AJ515384 NM_172000	-168227	-	TSC_hg19_v1_chr1_-_182361366 AK122784 NM_001033044 NM_002065	-176637	-	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	20406	-	CU675308 TSC_hg19_v1_chr1_+_182569465	31469	+	AF493937 BT006638 CU675307 AB528682 U94829 U70426 BC006243 TSC_hg19_v1_chr1_-_182573525 AK301261 AK311880 NM_002928	35493	-	NM_001137669|RGSL1|353299|regulator of G-protein signaling like 1##AK302768|RGSL1|353299|regulator of G-protein signaling like 1##BC142944|RGSL1|353299|regulator of G-protein signaling like 1##AL136902|RGSL1|353299|regulator of G-protein signaling like 1##AJ515384|TEDDM1|127670|transmembrane epididymal protein 1##NM_172000|TEDDM1|127670|transmembrane epididymal protein 1##AK122784|GLUL|2752|glutamate-ammonia ligase##NM_001033044|GLUL|2752|glutamate-ammonia ligase##NM_002065|GLUL|2752|glutamate-ammonia ligase##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##AF493937|RGS16|6004|regulator of G-protein signaling 16##BT006638|RGS16|6004|regulator of G-protein signaling 16##U94829|RGS16|6004|regulator of G-protein signaling 16##U70426|RGS16|6004|regulator of G-protein signaling 16##BC006243|RGS16|6004|regulator of G-protein signaling 16##AK301261|RGS16|6004|regulator of G-protein signaling 16##AK311880|RGS16|6004|regulator of G-protein signaling 16##NM_002928|RGS16|6004|regulator of G-protein signaling 16	0.0	0.0	
chr12	47623466	47623578	reg1014968.p2	4.038	+	TSC_hg19_v1_chr12_+_47610379 BC016154 AK307166	-13191	+	BC008360 NM_138371	-13471	+	AL833007 AK091761 AX747169 AY454159 BC047595 TSC_hg19_v1_chr12_-_47473732 BC095477 NM_001143668 NM_181847	-149939	-	TSC_hg19_v1_chr12_-_48099790 BC056415 AK025561 AK299465	476245	-	TSC_hg19_v1_chr12_-_48099814 BC003680	476292	-	TSC_hg19_v1_chr12_-_48099819 NM_001146075 NM_001146076 NM_024604	476309	-	BC016154|FAM113B|91523|family with sequence similarity 113, member B##BC008360|FAM113B|91523|family with sequence similarity 113, member B##NM_138371|FAM113B|91523|family with sequence similarity 113, member B##AL833007|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AK091761|AMIGO2|347902|adhesion molecule with Ig-like domain 2##AY454159|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC047595|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC095477|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_001143668|AMIGO2|347902|adhesion molecule with Ig-like domain 2##NM_181847|AMIGO2|347902|adhesion molecule with Ig-like domain 2##BC056415|RPAP3|79657|RNA polymerase II associated protein 3##AK025561|RPAP3|79657|RNA polymerase II associated protein 3##AK299465|RPAP3|79657|RNA polymerase II associated protein 3##BC003680|RPAP3|79657|RNA polymerase II associated protein 3##NM_001146075|RPAP3|79657|RNA polymerase II associated protein 3##NM_001146076|RPAP3|79657|RNA polymerase II associated protein 3##NM_024604|RPAP3|79657|RNA polymerase II associated protein 3	0.990928	0.0	denovo_WM_7:40:0.954
chr12	50584499	50584679	reg1009344.p1	4.038	+	TSC_hg19_v1_chr12_-_50561153 AK298924	-23364	-	TSC_hg19_v1_chr12_-_50561112 AK026014	-23464	-	AB527479 TSC_hg19_v1_chr12_-_50561095 AK294521 BC014637 AK300937 NM_147190 BC033558	-23498	-	AK023649 AF157325 NM_001243775	10720	-	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	31867	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	92706	-	AK298924|CERS5|91012|ceramide synthase 5##AK026014|CERS5|91012|ceramide synthase 5##AK294521|CERS5|91012|ceramide synthase 5##BC014637|CERS5|91012|ceramide synthase 5##AK300937|CERS5|91012|ceramide synthase 5##NM_147190|CERS5|91012|ceramide synthase 5##BC033558|CERS5|91012|ceramide synthase 5##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1	1.995906	0.0	denovo_WM_7:5:0.470	denovo_WM_7:6:0.527	denovo_WM_7:-94:0.244	denovo_WM_7:-95:0.209
chr15	44885331	44885449	reg1017520.p2	4.038	+	TSC_hg19_v1_chr15_+_44829374 AK300659	-56008	+	BC002719 U97670 TSC_hg19_v1_chr15_+_44829352 AK002006	-56048	+	TSC_hg19_v1_chr15_+_44829313 AK023388	-56078	+	TSC_hg19_v1_chr15_-_44955849 AB385508 AB470308 AB470309 AB470310 AB058743 BC153879 BC047416	70454	-	TSC_hg19_v1_chr15_-_44955887 BC150640 NM_001160227 NM_025137	70490	-	BC036924 NM_001145112	83695	-	AK300659|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##BC002719|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##U97670|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK002006|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AK023388|EIF3J|8669|eukaryotic translation initiation factor 3, subunit J##AB470308|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470309|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB470310|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##AB058743|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC153879|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC047416|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC150640|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_001160227|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##NM_025137|SPG11|80208|spastic paraplegia 11 (autosomal recessive)##BC036924|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)##NM_001145112|PATL2|197135|protein associated with topoisomerase II homolog 2 (yeast)	0.949345	0.783195	denovo_WM_7:14:0.768	CTCF.p2:-22:0.783
chr17	79678811	79678991	reg1014520.p2	4.038	+	TSC_hg19_v1_chr17_+_79670506 BC007497 U25041 EF036488	-8389	+	TSC_hg19_v1_chr17_+_79670396 NM_002949 AK297076 X79865 BC002344	-8462	+	TSC_hg19_v1_chr17_-_79670327 AK026523	-8571	-	TSC_hg19_v1_chr17_+_79679341 BC015797	423	+	BC007355 NM_012140 TSC_hg19_v1_chr17_+_79679381 AK075249	480	+	TSC_hg19_v1_chr17_+_79679402 AJ131613 DQ893263 DQ896592 CU675633	526	+	BC007497|MRPL12|6182|mitochondrial ribosomal protein L12##U25041|MRPL12|6182|mitochondrial ribosomal protein L12##EF036488|MRPL12|6182|mitochondrial ribosomal protein L12##NM_002949|MRPL12|6182|mitochondrial ribosomal protein L12##X79865|MRPL12|6182|mitochondrial ribosomal protein L12##BC002344|MRPL12|6182|mitochondrial ribosomal protein L12##BC015797|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10##BC007355|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10##NM_012140|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10##AK075249|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10##AJ131613|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10##DQ893263|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10##DQ896592|SLC25A10|1468|solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10	0.0	0.0	
chr19	59005794	59005880	reg1003998.p2	4.038	+	AY280800 TSC_hg19_v1_chr19_+_58987792 AK000633 AY279351 NM_017908 BC017206 AK026153	-18054	+	AK092341 TSC_hg19_v1_chr19_+_58978664	-27170	+	TSC_hg19_v1_chr19_+_58978445 NM_014347 BC007717 AF060503	-27409	+	AB527212 TSC_hg19_v1_chr19_-_59023360 AK298446 AK123036 NM_012254	17540	-	BC024738 NM_032792 TSC_hg19_v1_chr19_-_59030968	25116	-	TSC_hg19_v1_chr19_-_59031178 AK130056 AK027392	25351	-	AY280800|ZNF446|55663|zinc finger protein 446##AK000633|ZNF446|55663|zinc finger protein 446##AY279351|ZNF446|55663|zinc finger protein 446##NM_017908|ZNF446|55663|zinc finger protein 446##BC017206|ZNF446|55663|zinc finger protein 446##AK026153|ZNF446|55663|zinc finger protein 446##AK092341|ZNF324|25799|zinc finger protein 324##NM_014347|ZNF324|25799|zinc finger protein 324##BC007717|ZNF324|25799|zinc finger protein 324##AF060503|ZNF324|25799|zinc finger protein 324##AK298446|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##AK123036|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##NM_012254|SLC27A5|10998|solute carrier family 27 (fatty acid transporter), member 5##BC024738|ZBTB45|84878|zinc finger and BTB domain containing 45##NM_032792|ZBTB45|84878|zinc finger and BTB domain containing 45##AK027392|ZBTB45|84878|zinc finger and BTB domain containing 45	1.988083	0.0	denovo_WM_7:63:0.271	denovo_WM_7:64:0.698
chr10	17044185	17044323	reg1015412.p1	4.037	+	TSC_hg19_v1_chr10_-_16859451 BC015644 BC005993 BC107898 BX647733 NM_012425 NM_152724	-184819	-	TSC_hg19_v1_chr10_-_16859397 AK225681 AK312520	-184860	-	TSC_hg19_v1_chr10_-_16859375 AK292911 BC008691	-184895	-	AF034611 NM_001081 TSC_hg19_v1_chr10_-_17171878	127579	-	TSC_hg19_v1_chr10_-_17243660 CR450316 AF045888 AK291417 AF012128 BC047733 AK303428 BX537961 AJ223333 AK299027	199479	-	NM_004412	199815	-	BC015644|RSU1|6251|Ras suppressor protein 1##BC005993|RSU1|6251|Ras suppressor protein 1##BC107898|RSU1|6251|Ras suppressor protein 1##BX647733|RSU1|6251|Ras suppressor protein 1##NM_012425|RSU1|6251|Ras suppressor protein 1##NM_152724|RSU1|6251|Ras suppressor protein 1##AK225681|RSU1|6251|Ras suppressor protein 1##AK312520|RSU1|6251|Ras suppressor protein 1##AK292911|RSU1|6251|Ras suppressor protein 1##BC008691|RSU1|6251|Ras suppressor protein 1##AF034611|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_001081|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##CR450316|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF045888|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK291417|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF012128|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BC047733|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK303428|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BX537961|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AJ223333|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK299027|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##NM_004412|TRDMT1|1787|tRNA aspartic acid methyltransferase 1	0.0	0.0	
chr2	174829940	174830083	reg1012628.p1	4.037	+	BC126414 BC143928 AK304199 TSC_hg19_v1_chr2_-_174830067	-2	-	TSC_hg19_v1_chr2_-_174829232 AJ310752 AJ430844 AY441958 AB528284	-817	-	TSC_hg19_v1_chr2_-_174828899 AY070137 NM_001017371	-1139	-	AY441957 NM_001172712 NM_003111	418	-	BC068447 TSC_hg19_v1_chr2_-_175113235 BC013925 BC091522 DQ250006	283206	-	TSC_hg19_v1_chr2_-_175113245 AK296339 BC029376 AF134478	283234	-	BC126414|SP3|6670|Sp3 transcription factor##BC143928|SP3|6670|Sp3 transcription factor##AK304199|SP3|6670|Sp3 transcription factor##AJ310752|SP3|6670|Sp3 transcription factor##AY441958|SP3|6670|Sp3 transcription factor##AY070137|SP3|6670|Sp3 transcription factor##NM_001017371|SP3|6670|Sp3 transcription factor##AY441957|SP3|6670|Sp3 transcription factor##NM_001172712|SP3|6670|Sp3 transcription factor##NM_003111|SP3|6670|Sp3 transcription factor##BC068447|OLA1|29789|Obg-like ATPase 1##BC013925|OLA1|29789|Obg-like ATPase 1##BC091522|OLA1|29789|Obg-like ATPase 1##DQ250006|OLA1|29789|Obg-like ATPase 1##AK296339|OLA1|29789|Obg-like ATPase 1##BC029376|OLA1|29789|Obg-like ATPase 1##AF134478|OLA1|29789|Obg-like ATPase 1	0.0	0.0	
chr5	173754399	173754493	reg1014327.p1	4.037	+	TSC_hg19_v1_chr5_+_173472748 AF113537 AF123767 AF133422	-281694	+	TSC_hg19_v1_chr5_+_173472722 AK315952 AK297196 AK312359 BC002619 NM_015980 AK294383 BC018873	-281735	+	NM_001144954 BC092489 BC066964 BC034971 BC047225 BC053953 BC057842	-338256	+	TSC_hg19_v1_chr5_+_174151624 NM_002449 D31771 D89377 S75361 D26145 BC015509 X69295 AB590246 DQ891600 DQ894795 BT009814	397166	+	NM_000794	1116716	-	NM_022754 TSC_hg19_v1_chr5_+_174905562 BC063241 BX648188 AK056915 AF327346	1151116	+	AF113537|HMP19|51617|HMP19 protein##AF123767|HMP19|51617|HMP19 protein##AF133422|HMP19|51617|HMP19 protein##AK315952|HMP19|51617|HMP19 protein##AK297196|HMP19|51617|HMP19 protein##AK312359|HMP19|51617|HMP19 protein##BC002619|HMP19|51617|HMP19 protein##NM_015980|HMP19|51617|HMP19 protein##AK294383|HMP19|51617|HMP19 protein##BC018873|HMP19|51617|HMP19 protein##NM_001144954|C5orf47|133491|chromosome 5 open reading frame 47##BC092489|C5orf47|133491|chromosome 5 open reading frame 47##BC066964|C5orf47|133491|chromosome 5 open reading frame 47##BC034971|C5orf47|133491|chromosome 5 open reading frame 47##BC047225|C5orf47|133491|chromosome 5 open reading frame 47##BC053953|C5orf47|133491|chromosome 5 open reading frame 47##BC057842|C5orf47|133491|chromosome 5 open reading frame 47##NM_002449|MSX2|4488|msh homeobox 2##D31771|MSX2|4488|msh homeobox 2##D89377|MSX2|4488|msh homeobox 2##S75361|MSX2|4488|msh homeobox 2##D26145|MSX2|4488|msh homeobox 2##BC015509|MSX2|4488|msh homeobox 2##X69295|MSX2|4488|msh homeobox 2##DQ891600|MSX2|4488|msh homeobox 2##DQ894795|MSX2|4488|msh homeobox 2##BT009814|MSX2|4488|msh homeobox 2##NM_000794|DRD1|1812|dopamine receptor D1##NM_022754|SFXN1|94081|sideroflexin 1##BC063241|SFXN1|94081|sideroflexin 1##BX648188|SFXN1|94081|sideroflexin 1##AK056915|SFXN1|94081|sideroflexin 1##AF327346|SFXN1|94081|sideroflexin 1	0.0	0.999066	CTCF.p2:30:0.999
chr7	126359756	126359923	reg1011757.p1	4.037	+	NM_001042594 NM_015450	-1789803	-	BC130600 BC130604 NM_001024603	-1929037	-	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-1954043	-	NM_000845	523729	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	532526	-	TSC_hg19_v1_chr7_-_126893165 AK290197	533313	-	NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AK290197|GRM8|2918|glutamate receptor, metabotropic 8	1.981689	0.0	denovo_WM_7:16:0.732	denovo_WM_7:72:0.238	denovo_WM_7:73:0.615
chr8	9418097	9418230	reg1013255.p2	4.037	+	TSC_hg19_v1_chr8_+_9413439 BC023578 AF082556 NM_003747 AK301798	-4682	+	TSC_hg19_v1_chr8_+_9413423 AK302031	-4740	+	TSC_hg19_v1_chr8_+_9413421 BC098394	-4758	+	TSC_hg19_v1_chr8_+_9911765 AY958429	493606	+	TSC_hg19_v1_chr8_+_9911861 AJ242973 BC054033 NM_001135670 NM_012331 AF086925 AF183420	493716	+	AK293488 AY958430 AY958431 BC047552 NM_001135671 NM_001199729	534900	+	BC023578|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AF082556|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##NM_003747|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK301798|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AY958429|MSRA|4482|methionine sulfoxide reductase A##AJ242973|MSRA|4482|methionine sulfoxide reductase A##BC054033|MSRA|4482|methionine sulfoxide reductase A##NM_001135670|MSRA|4482|methionine sulfoxide reductase A##NM_012331|MSRA|4482|methionine sulfoxide reductase A##AF086925|MSRA|4482|methionine sulfoxide reductase A##AF183420|MSRA|4482|methionine sulfoxide reductase A##AK293488|MSRA|4482|methionine sulfoxide reductase A##AY958430|MSRA|4482|methionine sulfoxide reductase A##AY958431|MSRA|4482|methionine sulfoxide reductase A##BC047552|MSRA|4482|methionine sulfoxide reductase A##NM_001135671|MSRA|4482|methionine sulfoxide reductase A##NM_001199729|MSRA|4482|methionine sulfoxide reductase A	0.0	0.0	
chr10	114137889	114137999	reg1013039.p1	4.036	+	TSC_hg19_v1_chr10_+_114136043 AB033899	-1865	+	TSC_hg19_v1_chr10_+_114135984 AK223288 BC007985 AY358520	-1956	+	AK222782 TSC_hg19_v1_chr10_+_114135962 NM_016234 AK024932	-1995	+	TSC_hg19_v1_chr10_+_114154539 AM262166 DQ893266 DQ896596	16669	+	TSC_hg19_v1_chr10_-_114206706 BX647270 BC007213 BC017434 AF267740 AK223086 AK025605 NM_022494	68744	-	TSC_hg19_v1_chr10_+_114206756 AK095476 NM_145206 BC064614	68820	+	AB033899|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK223288|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##BC007985|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AY358520|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK222782|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##NM_016234|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AK024932|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##AM262166|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##DQ893266|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##DQ896596|ACSL5|51703|acyl-CoA synthetase long-chain family member 5##BX647270|ZDHHC6|64429|zinc finger, DHHC-type containing 6##BC007213|ZDHHC6|64429|zinc finger, DHHC-type containing 6##BC017434|ZDHHC6|64429|zinc finger, DHHC-type containing 6##AF267740|ZDHHC6|64429|zinc finger, DHHC-type containing 6##AK223086|ZDHHC6|64429|zinc finger, DHHC-type containing 6##AK025605|ZDHHC6|64429|zinc finger, DHHC-type containing 6##NM_022494|ZDHHC6|64429|zinc finger, DHHC-type containing 6##NM_145206|VTI1A|143187|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	1.988291	0.0	denovo_WM_7:49:0.622	denovo_WM_7:50:0.311	denovo_WM_7:64:0.326	denovo_WM_7:65:0.637
chr10	60712614	60712772	reg1009749.p1	4.036	+	TSC_hg19_v1_chr10_+_60272869 NM_001080512 AY726586	-439781	+	BC029815 TSC_hg19_v1_chr10_+_60145169 AK312558 M62810 NM_003201 BC018628 BC104482 BC126366 EU279428 HQ258758 AB451241 AB451366 AB464302 BT019658 BT019659 CR407653	-567488	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	-617857	+	TSC_hg19_v1_chr10_-_60936189 AK055418	223513	-	AL834339 NM_032439 TSC_hg19_v1_chr10_+_60936408 CR749429	223695	+	BC011268 AK054956 TSC_hg19_v1_chr10_+_60936573 AB384640 AM392743	223867	+	NM_001080512|BICC1|80114|bicaudal C homolog 1 (Drosophila)##AY726586|BICC1|80114|bicaudal C homolog 1 (Drosophila)##BC029815|TFAM|7019|transcription factor A, mitochondrial##AK312558|TFAM|7019|transcription factor A, mitochondrial##M62810|TFAM|7019|transcription factor A, mitochondrial##NM_003201|TFAM|7019|transcription factor A, mitochondrial##BC018628|TFAM|7019|transcription factor A, mitochondrial##BC104482|TFAM|7019|transcription factor A, mitochondrial##BC126366|TFAM|7019|transcription factor A, mitochondrial##EU279428|TFAM|7019|transcription factor A, mitochondrial##HQ258758|TFAM|7019|transcription factor A, mitochondrial##AB451241|TFAM|7019|transcription factor A, mitochondrial##AB451366|TFAM|7019|transcription factor A, mitochondrial##BT019658|TFAM|7019|transcription factor A, mitochondrial##BT019659|TFAM|7019|transcription factor A, mitochondrial##CR407653|TFAM|7019|transcription factor A, mitochondrial##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AL834339|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##NM_032439|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##CR749429|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##BC011268|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AK054956|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AM392743|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like	0.268475	0.881888	CTCF.p2:-77:0.882
chr10	91411801	91411875	reg1003851.p1	4.036	+	TSC_hg19_v1_chr10_-_91405320 AY027661 NM_148977	-6514	-	TSC_hg19_v1_chr10_-_91404973 AK125428	-6895	-	AF355198 AY027662 AY027663 NM_138316 NM_148978	-8200	-	TSC_hg19_v1_chr10_+_91461342 AK290439 NM_016195 AY282406 BC012585 BC108688 BC058913 AL117496 BC093089 AB033337 BC046134 BC042130 AK074336	49537	+	TSC_hg19_v1_chr10_+_91498725 AK025628	86929	+	TSC_hg19_v1_chr10_-_92617474 AB451482 AY493988 AK292606 L21195 U68487 U68488	1205608	-	AY027661|PANK1|53354|pantothenate kinase 1##NM_148977|PANK1|53354|pantothenate kinase 1##AK125428|PANK1|53354|pantothenate kinase 1##AF355198|PANK1|53354|pantothenate kinase 1##AY027662|PANK1|53354|pantothenate kinase 1##AY027663|PANK1|53354|pantothenate kinase 1##NM_138316|PANK1|53354|pantothenate kinase 1##NM_148978|PANK1|53354|pantothenate kinase 1##AK290439|KIF20B|9585|kinesin family member 20B##NM_016195|KIF20B|9585|kinesin family member 20B##AY282406|KIF20B|9585|kinesin family member 20B##BC012585|KIF20B|9585|kinesin family member 20B##BC108688|KIF20B|9585|kinesin family member 20B##BC058913|KIF20B|9585|kinesin family member 20B##AL117496|KIF20B|9585|kinesin family member 20B##BC093089|KIF20B|9585|kinesin family member 20B##AB033337|KIF20B|9585|kinesin family member 20B##BC046134|KIF20B|9585|kinesin family member 20B##BC042130|KIF20B|9585|kinesin family member 20B##AK074336|KIF20B|9585|kinesin family member 20B##AK025628|KIF20B|9585|kinesin family member 20B##AB451482|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AY493988|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##AK292606|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##L21195|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68487|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)##U68488|HTR7|3363|5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)	0.0	0.0	
chr1	189828603	189828732	reg1014859.p1	4.036	+	NM_024420 TSC_hg19_v1_chr1_+_186798126 AK290336 M68874 M72393 AK302938 BC114340	-3030579	+	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	-3179177	-	M33478 NM_002597	-3398440	-	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	618068	-	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	2298936	+	AY643711 NM_001039152	2457454	+	NM_024420|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK290336|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M68874|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M72393|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK302938|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##BC114340|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M33478|PDC|5132|phosducin##NM_002597|PDC|5132|phosducin##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21	0.984628	0.956704	CTCF.p2:31:0.957	denovo_WM_7:-94:0.651	denovo_WM_7:-95:0.333
chr12	93813271	93813431	reg1010885.p1	4.036	+	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	-41459	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-490253	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-490308	-	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	22335	-	TSC_hg19_v1_chr12_-_93835718 D83004	22367	-	TSC_hg19_v1_chr12_-_93835724 BC000396	22387	-	NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC000396|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.0	0.97838	CTCF.p2:40:0.978
chr13	80974544	80974656	reg1013881.p2	4.036	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-59536	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-61558	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-919045	+	TSC_hg19_v1_chr13_-_84456424 BC051738	3481825	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	3481900	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	5398839	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.994629	0.0	
chr15	44124825	44124961	reg1009227.p2	4.036	+	NM_001167941 NM_024908 TSC_hg19_v1_chr15_+_44119199 AK290933 BC025247 AK023035 BC051855 EF011624 CU690868	-5706	+	AB463886 CU690792 DQ893389 DQ896709 TSC_hg19_v1_chr15_-_44116882 U04209 BC023557 BC050742 AK312867 NM_005926	-8035	-	TSC_hg19_v1_chr15_+_44092806 AK022435 AF161485 AF049613	-32091	+	BC043486 CU691018 BC007796 BC053647 NM_032892 TSC_hg19_v1_chr15_-_44487448	362457	-	AK090572 AX746516 TSC_hg19_v1_chr15_-_44487470	362576	-	TSC_hg19_v1_chr15_+_44580919 NM_138423 NM_177974 BC012124	456006	+	NM_001167941|WDR76|79968|WD repeat domain 76##NM_024908|WDR76|79968|WD repeat domain 76##AK290933|WDR76|79968|WD repeat domain 76##BC025247|WDR76|79968|WD repeat domain 76##AK023035|WDR76|79968|WD repeat domain 76##BC051855|WDR76|79968|WD repeat domain 76##EF011624|WDR76|79968|WD repeat domain 76##DQ893389|MFAP1|4236|microfibrillar-associated protein 1##DQ896709|MFAP1|4236|microfibrillar-associated protein 1##U04209|MFAP1|4236|microfibrillar-associated protein 1##BC023557|MFAP1|4236|microfibrillar-associated protein 1##BC050742|MFAP1|4236|microfibrillar-associated protein 1##AK312867|MFAP1|4236|microfibrillar-associated protein 1##NM_005926|MFAP1|4236|microfibrillar-associated protein 1##AK022435|C15orf63|25764|chromosome 15 open reading frame 63##AF161485|C15orf63|25764|chromosome 15 open reading frame 63##AF049613|C15orf63|25764|chromosome 15 open reading frame 63##BC043486|FRMD5|84978|FERM domain containing 5##BC007796|FRMD5|84978|FERM domain containing 5##BC053647|FRMD5|84978|FERM domain containing 5##NM_032892|FRMD5|84978|FERM domain containing 5##AK090572|FRMD5|84978|FERM domain containing 5##NM_138423|CASC4|113201|cancer susceptibility candidate 4##NM_177974|CASC4|113201|cancer susceptibility candidate 4##BC012124|CASC4|113201|cancer susceptibility candidate 4	1.981137	0.0	denovo_WM_7:53:0.804	denovo_WM_7:68:0.888
chr15	49763933	49764113	reg1001298.p1	4.036	+	NM_002009 BC010956 AK313160 M60828 S81661	-48607	+	TSC_hg19_v1_chr15_+_49462423 NM_002044 AK301361 BC005141 AK098049 AK316440 M84443 BT006901 CU675015 DQ890583 DQ893742	-301560	+	TSC_hg19_v1_chr15_+_49447990 AF461816 AL832745 NM_001001556	-316032	+	BC048125 BC048139 AK057362 NM_152647	149060	-	TSC_hg19_v1_chr15_+_49913254 NM_001144955 NM_020234 BC018028 AF168717 AK290184 BC093073 BC032535	149226	+	AB075819 TSC_hg19_v1_chr15_-_50405521	641493	-	NM_002009|FGF7|2252|fibroblast growth factor 7##BC010956|FGF7|2252|fibroblast growth factor 7##AK313160|FGF7|2252|fibroblast growth factor 7##M60828|FGF7|2252|fibroblast growth factor 7##S81661|FGF7|2252|fibroblast growth factor 7##NM_002044|GALK2|2585|galactokinase 2##AK301361|GALK2|2585|galactokinase 2##BC005141|GALK2|2585|galactokinase 2##AK098049|GALK2|2585|galactokinase 2##AK316440|GALK2|2585|galactokinase 2##M84443|GALK2|2585|galactokinase 2##BT006901|GALK2|2585|galactokinase 2##DQ890583|GALK2|2585|galactokinase 2##DQ893742|GALK2|2585|galactokinase 2##AF461816|GALK2|2585|galactokinase 2##AL832745|GALK2|2585|galactokinase 2##NM_001001556|GALK2|2585|galactokinase 2##BC048125|C15orf33|196951|chromosome 15 open reading frame 33##BC048139|C15orf33|196951|chromosome 15 open reading frame 33##AK057362|C15orf33|196951|chromosome 15 open reading frame 33##NM_152647|C15orf33|196951|chromosome 15 open reading frame 33##NM_001144955|DTWD1|56986|DTW domain containing 1##NM_020234|DTWD1|56986|DTW domain containing 1##BC018028|DTWD1|56986|DTW domain containing 1##AF168717|DTWD1|56986|DTW domain containing 1##AK290184|DTWD1|56986|DTW domain containing 1##BC093073|DTWD1|56986|DTW domain containing 1##BC032535|DTWD1|56986|DTW domain containing 1##AB075819|ATP8B4|79895|ATPase, class I, type 8B, member 4	0.0	0.0	
chr3	49098470	49098650	reg1009884.p1	4.036	+	TSC_hg19_v1_chr3_-_49066865 NM_000884	-31690	-	BC009236 BC015567 BC012840 J04208 BC006124 TSC_hg19_v1_chr3_-_49066832 AK293397	-31730	-	TSC_hg19_v1_chr3_-_49066760 CU680406 DQ893403 DQ896721 AB527256	-31788	-	AK292536 TSC_hg19_v1_chr3_-_49130931	32361	-	TSC_hg19_v1_chr3_-_49131485 BC130340 BC130342 BC110855	32891	-	TSC_hg19_v1_chr3_-_49131496 AK074313	32935	-	NM_000884|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC009236|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC015567|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC012840|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##J04208|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC006124|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##AK293397|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##DQ893403|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##DQ896721|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##AK292536|QRICH1|54870|glutamine-rich 1##BC130340|QRICH1|54870|glutamine-rich 1##BC130342|QRICH1|54870|glutamine-rich 1##BC110855|QRICH1|54870|glutamine-rich 1##AK074313|QRICH1|54870|glutamine-rich 1	1.9977	0.0	denovo_WM_7:15:0.367	denovo_WM_7:16:0.276	denovo_WM_7:32:0.289	denovo_WM_7:33:0.381
chr3	93781804	93781936	reg1013740.p1	4.036	+	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-26	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-126	-	BC034696 NM_001001850 TSC_hg19_v1_chr3_-_93747472	-34406	-	AK122674 NM_001195643	196	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	2751560	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	3376601	+	AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##BC034696|STX19|415117|syntaxin 19##NM_001001850|STX19|415117|syntaxin 19##AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6	0.0	0.0	
chr8	11755040	11755156	reg1012747.p2	4.036	+	TSC_hg19_v1_chr8_-_11725628 NM_001908 NM_147780 NM_147781 NM_147782 NM_147783	-29400	-	TSC_hg19_v1_chr8_-_11725624 AK075393	-29474	-	AK092070 AK130184 AK290239 AK297687 BC095408 TSC_hg19_v1_chr8_-_11725597 AK296845 BX647952	-29501	-	AY621333 DQ012026 NM_001033018	77009	-	AY621332 DQ012025 NM_001033017	84731	+	AY621331 DQ012024 NM_001033019 BC130461 BC130463	98691	-	NM_001908|CTSB|1508|cathepsin B##NM_147780|CTSB|1508|cathepsin B##NM_147781|CTSB|1508|cathepsin B##NM_147782|CTSB|1508|cathepsin B##NM_147783|CTSB|1508|cathepsin B##AK075393|CTSB|1508|cathepsin B##AK092070|CTSB|1508|cathepsin B##AK130184|CTSB|1508|cathepsin B##AK290239|CTSB|1508|cathepsin B##AK297687|CTSB|1508|cathepsin B##BC095408|CTSB|1508|cathepsin B##AK296845|CTSB|1508|cathepsin B##BX647952|CTSB|1508|cathepsin B##AY621333|DEFB136|613210|defensin, beta 136##DQ012026|DEFB136|613210|defensin, beta 136##NM_001033018|DEFB136|613210|defensin, beta 136##AY621332|DEFB135|613209|defensin, beta 135##DQ012025|DEFB135|613209|defensin, beta 135##NM_001033017|DEFB135|613209|defensin, beta 135##AY621331|DEFB134|613211|defensin, beta 134##DQ012024|DEFB134|613211|defensin, beta 134##NM_001033019|DEFB134|613211|defensin, beta 134##BC130461|DEFB134|613211|defensin, beta 134##BC130463|DEFB134|613211|defensin, beta 134	0.0	0.0	
chr9	114782753	114782834	reg1014269.p2	4.036	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-123326	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-123679	+	AL833535 NM_173521	-237018	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	154727	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	312494	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	313056	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.121984	0.0	
chr10	3819004	3819162	reg1011377.p1	4.035	+	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-604078	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	-604113	-	BC045577 TSC_hg19_v1_chr10_-_3214936	-604158	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	8228	-	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	8426	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1049335	+	BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2	1.273298	0.0	denovo_WM_7:36:0.223	denovo_WM_7:47:0.447
chr18	12359696	12359818	reg1015678.p1	4.035	+	TSC_hg19_v1_chr18_+_12308246 AK022340 AK098440 AK304616 BC002654 NM_032525 AK298196 BC039717 AB590145 DQ893486 DQ896394	-51492	+	TSC_hg19_v1_chr18_+_12308239 AK001295 AK092677 AK311364	-51519	+	NM_001279 AK122762 AF041378 AY364639	-105408	+	TSC_hg19_v1_chr18_-_12377199 Y18314 BC065016	17431	-	TSC_hg19_v1_chr18_-_12377251 BC024282 NM_006796	17510	-	NM_001142405 NM_006553 AK056046 BC106750 TSC_hg19_v1_chr18_+_12407941	48164	+	AK022340|TUBB6|84617|tubulin, beta 6 class V##AK098440|TUBB6|84617|tubulin, beta 6 class V##AK304616|TUBB6|84617|tubulin, beta 6 class V##BC002654|TUBB6|84617|tubulin, beta 6 class V##NM_032525|TUBB6|84617|tubulin, beta 6 class V##AK298196|TUBB6|84617|tubulin, beta 6 class V##DQ893486|TUBB6|84617|tubulin, beta 6 class V##DQ896394|TUBB6|84617|tubulin, beta 6 class V##AK001295|TUBB6|84617|tubulin, beta 6 class V##AK092677|TUBB6|84617|tubulin, beta 6 class V##AK311364|TUBB6|84617|tubulin, beta 6 class V##NM_001279|CIDEA|1149|cell death-inducing DFFA-like effector a##AK122762|CIDEA|1149|cell death-inducing DFFA-like effector a##AF041378|CIDEA|1149|cell death-inducing DFFA-like effector a##AY364639|CIDEA|1149|cell death-inducing DFFA-like effector a##Y18314|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##BC065016|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##BC024282|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##NM_006796|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##NM_001142405|SLMO1|10650|slowmo homolog 1 (Drosophila)##NM_006553|SLMO1|10650|slowmo homolog 1 (Drosophila)##AK056046|SLMO1|10650|slowmo homolog 1 (Drosophila)##BC106750|SLMO1|10650|slowmo homolog 1 (Drosophila)	0.998743	0.0	denovo_WM_7:-8:0.999
chr3	47507806	47507986	reg1016453.p2	4.035	+	AB040904 NM_015466 TSC_hg19_v1_chr3_+_47422510 AK055157 AK299906 AK295888 AK289502 AB025194 AF290614 AK295877 BC089042	-85364	+	NM_025010 TSC_hg19_v1_chr3_+_47324433 AK023765 AK291477 AK295292 BX537953 BC015962 AB527175 AM393269 AM393767 BC032620	-183468	+	BC015311 NM_001134878 NM_022342 NM_182902	-183601	-	TSC_hg19_v1_chr3_-_47517349 AK300311	9441	-	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	9536	-	DQ787088 BC000623 BC014204 TSC_hg19_v1_chr3_-_47555203 AK225721 AK000218 AK298202 NM_001031703	47246	-	AB040904|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_015466|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK055157|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK299906|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295888|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK289502|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AB025194|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AF290614|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295877|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##BC089042|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_025010|KLHL18|23276|kelch-like 18 (Drosophila)##AK023765|KLHL18|23276|kelch-like 18 (Drosophila)##AK291477|KLHL18|23276|kelch-like 18 (Drosophila)##AK295292|KLHL18|23276|kelch-like 18 (Drosophila)##BX537953|KLHL18|23276|kelch-like 18 (Drosophila)##BC015962|KLHL18|23276|kelch-like 18 (Drosophila)##AM393269|KLHL18|23276|kelch-like 18 (Drosophila)##AM393767|KLHL18|23276|kelch-like 18 (Drosophila)##BC032620|KLHL18|23276|kelch-like 18 (Drosophila)##BC015311|KIF9|64147|kinesin family member 9##NM_001134878|KIF9|64147|kinesin family member 9##NM_022342|KIF9|64147|kinesin family member 9##NM_182902|KIF9|64147|kinesin family member 9##AK300311|SCAP|22937|SREBF chaperone##AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone##DQ787088|C3orf75|54859|chromosome 3 open reading frame 75##BC000623|C3orf75|54859|chromosome 3 open reading frame 75##BC014204|C3orf75|54859|chromosome 3 open reading frame 75##AK225721|C3orf75|54859|chromosome 3 open reading frame 75##AK000218|C3orf75|54859|chromosome 3 open reading frame 75##AK298202|C3orf75|54859|chromosome 3 open reading frame 75##NM_001031703|C3orf75|54859|chromosome 3 open reading frame 75	0.679077	0.0	denovo_WM_7:52:0.262
chrUn_gl000222	84290	84407	reg1014379.p1	4.035	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr19	10044905	10045034	reg1013515.p2	4.034	+	BC031971 TSC_hg19_v1_chr19_+_9946188	-98805	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	-99018	+	TSC_hg19_v1_chr19_+_9938597 AK309258 AF313915 BC007053 BC110839	-106356	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	2155	-	TSC_hg19_v1_chr19_-_10121181 AF177941 NM_015719	76174	-	DQ426888 AF229845 NM_015725	78923	+	BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK309258|UBL5|59286|ubiquitin-like 5##AF313915|UBL5|59286|ubiquitin-like 5##BC007053|UBL5|59286|ubiquitin-like 5##BC110839|UBL5|59286|ubiquitin-like 5##DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2##AF177941|COL5A3|50509|collagen, type V, alpha 3##NM_015719|COL5A3|50509|collagen, type V, alpha 3##AF229845|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_015725|RDH8|50700|retinol dehydrogenase 8 (all-trans)	0.0	0.063397	
chr20	30483154	30483272	reg1006647.p2	4.034	+	TSC_hg19_v1_chr20_+_30467627 BC036213 AK303963 AK302360 AK302806	-15600	+	AK093491 AX748163 NM_001008409 BC068593 BC104024 BC104025	-24681	+	BC056911 AK097430 NM_080611	-24798	-	TSC_hg19_v1_chr20_-_30539781 BC001856 AB528566	56547	-	TSC_hg19_v1_chr20_-_30539818 BC009334 AK312021	56613	-	TSC_hg19_v1_chr20_-_30539856 NM_030815 AY286301	56658	-	BC036213|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK303963|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK302360|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK302806|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##AK093491|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##NM_001008409|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC068593|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC104024|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC104025|TTLL9|164395|tubulin tyrosine ligase-like family, member 9##BC056911|DUSP15|128853|dual specificity phosphatase 15##AK097430|C20orf57|83747|chromosome 20 open reading frame 57##NM_080611|DUSP15|128853|dual specificity phosphatase 15##BC001856|PDRG1|81572|p53 and DNA-damage regulated 1##BC009334|PDRG1|81572|p53 and DNA-damage regulated 1##AK312021|PDRG1|81572|p53 and DNA-damage regulated 1##NM_030815|PDRG1|81572|p53 and DNA-damage regulated 1##AY286301|PDRG1|81572|p53 and DNA-damage regulated 1	0.0	0.0	
chr2	81551319	81551421	reg1016162.p2	4.034	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-1019527	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-1019645	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-1019845	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	3135000	-	AK296741 TSC_hg19_v1_chr2_-_84686396	3135025	-	NM_003849	3135215	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.0	0.784778	CTCF.p2:-27:0.785
chr5	40441963	40442084	reg1014217.p1	4.034	+	TSC_hg19_v1_chr5_-_39425304 NM_001244871 NM_001343	-1016706	-	TSC_hg19_v1_chr5_-_39425082 AK314381	-1016959	-	BC003064 U53446 TSC_hg19_v1_chr5_-_39424971	-1017072	-	TSC_hg19_v1_chr5_+_40680033 BC027934 NM_000958	238004	+	TSC_hg19_v1_chr5_+_40680042 L25124	238021	+	AF023244 BC036536 BC015701 AK312560 AK307131 AK303119 NM_012382	314017	-	NM_001244871|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##NM_001343|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##AK314381|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC003064|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##U53446|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC027934|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##NM_000958|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##L25124|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##AF023244|TTC33|23548|tetratricopeptide repeat domain 33##BC036536|TTC33|23548|tetratricopeptide repeat domain 33##BC015701|TTC33|23548|tetratricopeptide repeat domain 33##AK312560|TTC33|23548|tetratricopeptide repeat domain 33##AK307131|TTC33|23548|tetratricopeptide repeat domain 33##AK303119|TTC33|23548|tetratricopeptide repeat domain 33##NM_012382|TTC33|23548|tetratricopeptide repeat domain 33	0.993828	0.0	denovo_WM_7:0:0.248	denovo_WM_7:-1:0.248	denovo_WM_7:-2:0.248	denovo_WM_7:-3:0.248
chr7	48291493	48291673	reg1011828.p1	4.034	+	AK126220 AY204751 BX647273 NM_152701	-80528	+	TSC_hg19_v1_chr7_+_48128951 BC053592 BC047030	-162628	+	TSC_hg19_v1_chr7_+_48128821 NM_003364 AK297863 BC001405 X90858	-162783	+	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	1521687	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	1841241	-	NM_001161834	1844098	+	AK126220|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##AY204751|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##NM_152701|ABCA13|154664|ATP-binding cassette, sub-family A (ABC1), member 13##BC053592|UPP1|7378|uridine phosphorylase 1##BC047030|UPP1|7378|uridine phosphorylase 1##NM_003364|UPP1|7378|uridine phosphorylase 1##AK297863|UPP1|7378|uridine phosphorylase 1##BC001405|UPP1|7378|uridine phosphorylase 1##X90858|UPP1|7378|uridine phosphorylase 1##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72	0.0	0.0	
chr9	37303675	37303789	reg1005885.p2	4.034	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-183149	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-183224	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-183246	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	118974	+	BC010007 TSC_hg19_v1_chr9_-_37465267	161528	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	161663	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.995473	0.0	
chr9	968429	968519	reg1014154.p1	4.034	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-126711	+	TSC_hg19_v1_chr9_+_706828 BC038116 NM_153186	-261644	+	AB205112 TSC_hg19_v1_chr9_+_686677	-281808	+	NM_021240 BC113584 BC117245	8491	+	AF193873 TSC_hg19_v1_chr9_+_977425	8931	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	81870	+	AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC038116|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_153186|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2	0.996948	0.0	denovo_WM_7:49:0.928
chr1	155470278	155470397	reg1013103.p2	4.033	+	AK298730 NM_014328 AK093777 AX748300 BC001045 AK307736 TSC_hg19_v1_chr1_+_155294297 AK074485 AB026894 AK074982 BC028055 BC004293 BX640612	-176045	+	TSC_hg19_v1_chr1_-_155293939 BC080538 NM_001039517 BC062571	-176395	-	BC052277 NM_001105205	-176610	+	AF257305 TSC_hg19_v1_chr1_-_155532251	61869	-	AB037841 AB209068 NM_018489 TSC_hg19_v1_chr1_-_155532387	62030	-	TSC_hg19_v1_chr1_-_155532562 AK307595	62244	-	AK298730|RUSC1|23623|RUN and SH3 domain containing 1##NM_014328|RUSC1|23623|RUN and SH3 domain containing 1##AK093777|RUSC1|23623|RUN and SH3 domain containing 1##BC001045|RUSC1|23623|RUN and SH3 domain containing 1##AK307736|RUSC1|23623|RUN and SH3 domain containing 1##AK074485|RUSC1|23623|RUN and SH3 domain containing 1##AB026894|RUSC1|23623|RUN and SH3 domain containing 1##AK074982|RUSC1|23623|RUN and SH3 domain containing 1##BC028055|RUSC1|23623|RUN and SH3 domain containing 1##BC004293|RUSC1|23623|RUN and SH3 domain containing 1##BX640612|RUSC1|23623|RUN and SH3 domain containing 1##BC080538|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##NM_001039517|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC062571|RUSC1-AS1|284618|RUSC1 antisense RNA 1 (non-protein coding)##BC052277|RUSC1|23623|RUN and SH3 domain containing 1##NM_001105205|RUSC1|23623|RUN and SH3 domain containing 1##AF257305|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB037841|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AB209068|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##NM_018489|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)##AK307595|ASH1L|55870|ash1 (absent, small, or homeotic)-like (Drosophila)	0.705393	0.0	denovo_WM_7:26:0.540
chr11	75287834	75287953	reg1013786.p2	4.033	+	TSC_hg19_v1_chr11_+_75273296 AK297811 AK130870 AK309905 BC070087 BC014623 D83174 AY264853 BC036298 AK122936	-14564	+	NM_001207014 NM_001235 TSC_hg19_v1_chr11_+_75273168 AK290124	-14758	+	AF318377 TSC_hg19_v1_chr11_-_75236890	-51015	-	TSC_hg19_v1_chr11_-_75379154 BC063860 BC041411	91262	-	AB527183 BC139780 AB058781 BC150254 NM_033063 NM_207577	91553	-	AK123340 TSC_hg19_v1_chr11_-_75379695	91781	-	AK297811|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AK130870|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AK309905|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##BC070087|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##BC014623|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##D83174|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AY264853|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##BC036298|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AK122936|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##NM_001207014|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##NM_001235|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AK290124|SERPINH1|871|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)##AF318377|GDPD5|81544|glycerophosphodiester phosphodiesterase domain containing 5##BC063860|MAP6|4135|microtubule-associated protein 6##BC041411|MAP6|4135|microtubule-associated protein 6##BC139780|MAP6|4135|microtubule-associated protein 6##AB058781|MAP6|4135|microtubule-associated protein 6##BC150254|MAP6|4135|microtubule-associated protein 6##NM_033063|MAP6|4135|microtubule-associated protein 6##NM_207577|MAP6|4135|microtubule-associated protein 6##AK123340|MAP6|4135|microtubule-associated protein 6	1.138096	0.0	denovo_WM_7:30:0.879
chr12	108187627	108187748	reg1012428.p2	4.033	+	AY238895 NM_203436	-19526	+	TSC_hg19_v1_chr12_-_108154938 BC068562	-32686	-	TSC_hg19_v1_chr12_-_108154913 NM_012406	-32777	-	BC110330 AB018332 NM_014653	335800	+	NM_001142345	526751	-	U79526 U79527 AK291800 NM_001142343 NM_001142344 NM_004072	545397	-	AY238895|ASCL4|121549|achaete-scute complex homolog 4 (Drosophila)##NM_203436|ASCL4|121549|achaete-scute complex homolog 4 (Drosophila)##BC068562|PRDM4|11108|PR domain containing 4##NM_012406|PRDM4|11108|PR domain containing 4##BC110330|WSCD2|9671|WSC domain containing 2##AB018332|WSCD2|9671|WSC domain containing 2##NM_014653|WSCD2|9671|WSC domain containing 2##NM_001142345|CMKLR1|1240|chemokine-like receptor 1##U79526|CMKLR1|1240|chemokine-like receptor 1##U79527|CMKLR1|1240|chemokine-like receptor 1##AK291800|CMKLR1|1240|chemokine-like receptor 1##NM_001142343|CMKLR1|1240|chemokine-like receptor 1##NM_001142344|CMKLR1|1240|chemokine-like receptor 1##NM_004072|CMKLR1|1240|chemokine-like receptor 1	0.981062	0.0	denovo_WM_7:67:0.778
chr12	4967046	4967146	reg1015925.p1	4.033	+	NM_002235 X17622 TSC_hg19_v1_chr12_+_4918486	-48681	+	AJ271385 NM_017417 BC140888 BC140889	-137328	+	TSC_hg19_v1_chr12_+_4758272 NM_005002 BC015837 AF050641 AK308588 BC009311 AK291067 BC111546 L04490	-208818	+	TSC_hg19_v1_chr12_+_5019070 NM_000217	51964	+	M55513 NM_002234 BC096357 BC096358 BC099665 BC099666 M60451 M83254	186023	+	TSC_hg19_v1_chr12_+_5541277 AK293895 NM_001102654	574180	+	NM_002235|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##X17622|KCNA6|3742|potassium voltage-gated channel, shaker-related subfamily, member 6##AJ271385|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_017417|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140888|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##BC140889|GALNT8|26290|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)##NM_005002|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC015837|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AF050641|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AK308588|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC009311|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##AK291067|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##BC111546|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##L04490|NDUFA9|4704|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa##NM_000217|KCNA1|3736|potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia)##M55513|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##NM_002234|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096357|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC096358|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099665|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##BC099666|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M60451|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##M83254|KCNA5|3741|potassium voltage-gated channel, shaker-related subfamily, member 5##AK293895|NTF3|4908|neurotrophin 3##NM_001102654|NTF3|4908|neurotrophin 3	0.0	0.9876	CTCF.p2:-35:0.988
chr12	777830	777972	reg1009336.p3	4.033	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-5186	-	TSC_hg19_v1_chr12_-_752800 AK298043	-25082	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-25723	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	84255	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	84855	+	BC013629 TSC_hg19_v1_chr12_+_1017145	239181	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.999494	0.0	
chr18	13630215	13630355	reg1016977.p2	4.033	+	AF009426 AF009427 NM_004338 NM_181483	-9419	+	NM_001003674 NM_001003675	-18621	+	TSC_hg19_v1_chr18_+_13218783 NM_181481 NM_181482 BC030199	-411500	+	TSC_hg19_v1_chr18_-_13726549 AK055618	96221	-	TSC_hg19_v1_chr18_-_13726582 AK309506 NM_001098801 NM_152352	96301	-	TSC_hg19_v1_chr18_+_13726671 AK296370 BC017816 BX647977 AK303842 BC005290 AK292561 AB007858 AF067791 NM_003799 AB020966 BC036798	96405	+	AF009426|C18orf1|753|chromosome 18 open reading frame 1##AF009427|C18orf1|753|chromosome 18 open reading frame 1##NM_004338|C18orf1|753|chromosome 18 open reading frame 1##NM_181483|C18orf1|753|chromosome 18 open reading frame 1##NM_001003674|C18orf1|753|chromosome 18 open reading frame 1##NM_001003675|C18orf1|753|chromosome 18 open reading frame 1##NM_181481|C18orf1|753|chromosome 18 open reading frame 1##NM_181482|C18orf1|753|chromosome 18 open reading frame 1##BC030199|C18orf1|753|chromosome 18 open reading frame 1##AK055618|FAM210A|125228|family with sequence similarity 210, member A##AK309506|FAM210A|125228|family with sequence similarity 210, member A##NM_001098801|FAM210A|125228|family with sequence similarity 210, member A##NM_152352|FAM210A|125228|family with sequence similarity 210, member A##AK296370|RNMT|8731|RNA (guanine-7-) methyltransferase##BC017816|RNMT|8731|RNA (guanine-7-) methyltransferase##BX647977|RNMT|8731|RNA (guanine-7-) methyltransferase##AK303842|RNMT|8731|RNA (guanine-7-) methyltransferase##BC005290|RNMT|8731|RNA (guanine-7-) methyltransferase##AK292561|RNMT|8731|RNA (guanine-7-) methyltransferase##AB007858|RNMT|8731|RNA (guanine-7-) methyltransferase##AF067791|RNMT|8731|RNA (guanine-7-) methyltransferase##NM_003799|RNMT|8731|RNA (guanine-7-) methyltransferase##AB020966|RNMT|8731|RNA (guanine-7-) methyltransferase##BC036798|RNMT|8731|RNA (guanine-7-) methyltransferase	0.0	0.248071	CTCF.p2:69:0.248
chr2	216705763	216705866	reg1010240.p2	4.033	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-405032	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-405294	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-415842	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	172522	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	240730	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	240878	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	1.000144	0.0	denovo_WM_7:32:0.760
chr22	31318109	31318234	reg1009463.p1	4.033	+	AF323731 NM_030758 AK097581 AK294007 BC118914 AB051451 AB384622 AF288741	-227326	+	BC031973 TSC_hg19_v1_chr22_+_31063955	-254237	+	TSC_hg19_v1_chr22_-_31063837 BC030987 BC028724 AF461689 AK056074 NM_152511	-254336	-	AB020659 NM_014941	46015	-	AK056480 TSC_hg19_v1_chr22_+_31366813	48566	+	TSC_hg19_v1_chr22_+_31477303 NM_006932 NM_134269 NM_134270 AK128719 AF064238 AJ010306 AY061971 AY061972 Y13492 AK096953 AK293681 BC034237 AK300854	159111	+	AF323731|OSBP2|23762|oxysterol binding protein 2##NM_030758|OSBP2|23762|oxysterol binding protein 2##AK097581|OSBP2|23762|oxysterol binding protein 2##AK294007|OSBP2|23762|oxysterol binding protein 2##BC118914|OSBP2|23762|oxysterol binding protein 2##AB051451|OSBP2|23762|oxysterol binding protein 2##AF288741|OSBP2|23762|oxysterol binding protein 2##BC030987|DUSP18|150290|dual specificity phosphatase 18##BC028724|DUSP18|150290|dual specificity phosphatase 18##AF461689|DUSP18|150290|dual specificity phosphatase 18##AK056074|DUSP18|150290|dual specificity phosphatase 18##NM_152511|DUSP18|150290|dual specificity phosphatase 18##AB020659|MORC2|22880|MORC family CW-type zinc finger 2##NM_014941|MORC2|22880|MORC family CW-type zinc finger 2##NM_006932|SMTN|6525|smoothelin##NM_134269|SMTN|6525|smoothelin##NM_134270|SMTN|6525|smoothelin##AK128719|SMTN|6525|smoothelin##AF064238|SMTN|6525|smoothelin##AJ010306|SMTN|6525|smoothelin##AY061971|SMTN|6525|smoothelin##AY061972|SMTN|6525|smoothelin##Y13492|SMTN|6525|smoothelin##AK096953|SMTN|6525|smoothelin##AK293681|SMTN|6525|smoothelin##BC034237|SMTN|6525|smoothelin##AK300854|SMTN|6525|smoothelin	0.999494	0.0	
chr10	112602949	112603120	reg1010254.p1	4.032	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-198905	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-258919	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-275542	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	28578	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	28680	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	75662	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	0.0	0.0	
chr12	133209590	133209728	reg1015102.p1	4.032	+	AF260426 TSC_hg19_v1_chr12_+_133195386 AF190822 AF190823 AF190824 AF190825 AF260427 AF260428 AF260429 AY346374 BC109200 NM_012226 NM_016318 NM_170682 NM_170683 NM_174872 NM_174873 AF109387 AF109388	-14255	+	NM_001195520	-22623	-	NM_001142641	-142503	+	BC021559 TSC_hg19_v1_chr12_-_133215909	6183	-	TSC_hg19_v1_chr12_-_133263981 U49356 S60080 BC144561 L09561 NM_006231	54281	-	TSC_hg19_v1_chr12_-_133264011 AF128542	54362	-	AF260426|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190822|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190823|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190824|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF190825|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260427|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260428|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF260429|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AY346374|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##BC109200|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_012226|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_016318|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_170682|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_170683|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_174872|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_174873|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF109387|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##AF109388|P2RX2|22953|purinergic receptor P2X, ligand-gated ion channel, 2##NM_001195520|LOC100507055|100507055|uncharacterized LOC100507055##NM_001142641|FBRSL1|57666|fibrosin-like 1##BC021559|POLE|5426|polymerase (DNA directed), epsilon##U49356|POLE|5426|polymerase (DNA directed), epsilon##S60080|POLE|5426|polymerase (DNA directed), epsilon##BC144561|POLE|5426|polymerase (DNA directed), epsilon##L09561|POLE|5426|polymerase (DNA directed), epsilon##NM_006231|POLE|5426|polymerase (DNA directed), epsilon##AF128542|POLE|5426|polymerase (DNA directed), epsilon	0.99773	0.0	denovo_WM_7:97:0.238	denovo_WM_7:98:0.238	denovo_WM_7:99:0.238	denovo_WM_7:100:0.238
chr13	49560402	49560503	reg1009314.p2	4.032	+	TSC_hg19_v1_chr13_+_49550955 BC136617 BC144301 BC132812	-9468	+	TSC_hg19_v1_chr13_+_49550938 BX640739	-9527	+	TSC_hg19_v1_chr13_+_49550791 BC051029	-9731	+	TSC_hg19_v1_chr13_+_49684452 AK302415 AJ749707 NM_014923 AB023187 BC107793	124004	+	AB463896 AY603964 NM_001507	234020	+	NM_001193478 NM_030911 TSC_hg19_v1_chr13_+_49822076 BC022801 BC092434 AK312835 BC032889 BC070238 AK297400 BC009562 AY027525 BC048092 BC125202 BC125203	261637	+	BC136617|FNDC3A|22862|fibronectin type III domain containing 3A##BC144301|FNDC3A|22862|fibronectin type III domain containing 3A##BC132812|FNDC3A|22862|fibronectin type III domain containing 3A##BX640739|FNDC3A|22862|fibronectin type III domain containing 3A##BC051029|FNDC3A|22862|fibronectin type III domain containing 3A##AK302415|FNDC3A|22862|fibronectin type III domain containing 3A##AJ749707|FNDC3A|22862|fibronectin type III domain containing 3A##NM_014923|FNDC3A|22862|fibronectin type III domain containing 3A##AB023187|FNDC3A|22862|fibronectin type III domain containing 3A##BC107793|FNDC3A|22862|fibronectin type III domain containing 3A##AY603964|MLNR|2862|motilin receptor##NM_001507|MLNR|2862|motilin receptor##NM_001193478|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##NM_030911|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC022801|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC092434|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK312835|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC032889|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC070238|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK297400|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC009562|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY027525|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC048092|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125202|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125203|CDADC1|81602|cytidine and dCMP deaminase domain containing 1	1.977878	0.0	denovo_WM_7:74:0.748	denovo_WM_7:75:0.242	denovo_WM_7:89:0.374	denovo_WM_7:90:0.615
chr14	24471032	24471113	reg1011777.p2	4.032	+	NM_198083 BC101814 BC101812 AK301373 BC000663 BC006125	-13000	+	NM_001193636 NM_001193637 GQ871924 AY616183 AY920361 AY920362 AY943857 BC041992 NM_001193635 GQ871921 GQ871925 GU564234 GU564235	-31874	+	BC062348 BC080582 TSC_hg19_v1_chr14_-_24423358 BX647964	-47721	-	GQ871923 GQ871922 BC171914 BC171918 GQ871926 NM_001082488	34592	+	TSC_hg19_v1_chr14_+_24521201 NM_138360	50104	+	AK314182 BC018046 AB009288 NM_006032 TSC_hg19_v1_chr14_+_24540770 AK294460 AK222675 AL137688	69697	+	NM_198083|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##BC101814|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##BC101812|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##AK301373|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##BC000663|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##BC006125|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##NM_001193636|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##NM_001193637|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##GQ871924|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##AY616183|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##AY920361|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##AY920362|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##AY943857|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##NM_001193635|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##GQ871921|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##GU564234|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##GU564235|DHRS4L2|317749|dehydrogenase/reductase (SDR family) member 4 like 2##BC062348|C14orf167|55449|chromosome 14 open reading frame 167##BC080582|C14orf167|55449|chromosome 14 open reading frame 167##BX647964|C14orf167|55449|chromosome 14 open reading frame 167##GQ871923|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##GQ871922|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##BC171914|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##BC171918|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##NM_001082488|DHRS4L1|728635|dehydrogenase/reductase (SDR family) member 4 like 1##NM_138360|LRRC16B|90668|leucine rich repeat containing 16B##AK314182|CPNE6|9362|copine VI (neuronal)##BC018046|CPNE6|9362|copine VI (neuronal)##AB009288|CPNE6|9362|copine VI (neuronal)##NM_006032|CPNE6|9362|copine VI (neuronal)##AK294460|CPNE6|9362|copine VI (neuronal)##AK222675|CPNE6|9362|copine VI (neuronal)##AL137688|CPNE6|9362|copine VI (neuronal)	0.977883	0.018895	denovo_WM_7:101:0.413	denovo_WM_7:102:0.413
chr14	35464037	35464139	reg1013140.p1	4.031	+	TSC_hg19_v1_chr14_+_35452224 AK293319 AK300824 BC003389 BC000652 U51920	-11800	+	NM_001146282 NM_003136 TSC_hg19_v1_chr14_+_35452178 AK312853	-11945	+	AB032252 NM_013448 NM_182648	-119236	-	NM_001079519	50024	+	TSC_hg19_v1_chr14_+_35515574 AK096173 BC029559 BX640884 CR749796 NM_173607 BX640984 AL833508	51444	+	AY518537 AY518535 CU679673 AB464102 BC012563 AY518536 BC010293 AK310700 AK311337 BC006823 TSC_hg19_v1_chr14_-_35591207	127103	-	AK293319|SRP54|6729|signal recognition particle 54kDa##AK300824|SRP54|6729|signal recognition particle 54kDa##BC003389|SRP54|6729|signal recognition particle 54kDa##BC000652|SRP54|6729|signal recognition particle 54kDa##U51920|SRP54|6729|signal recognition particle 54kDa##NM_001146282|SRP54|6729|signal recognition particle 54kDa##NM_003136|SRP54|6729|signal recognition particle 54kDa##AK312853|SRP54|6729|signal recognition particle 54kDa##AB032252|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_013448|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_182648|BAZ1A|11177|bromodomain adjacent to zinc finger domain, 1A##NM_001079519|FAM177A1|283635|family with sequence similarity 177, member A1##AK096173|FAM177A1|283635|family with sequence similarity 177, member A1##BC029559|FAM177A1|283635|family with sequence similarity 177, member A1##BX640884|FAM177A1|283635|family with sequence similarity 177, member A1##CR749796|FAM177A1|283635|family with sequence similarity 177, member A1##NM_173607|FAM177A1|283635|family with sequence similarity 177, member A1##BX640984|FAM177A1|283635|family with sequence similarity 177, member A1##AL833508|FAM177A1|283635|family with sequence similarity 177, member A1##AY518537|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY518535|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC012563|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AY518536|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC010293|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK310700|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##AK311337|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma##BC006823|PPP2R3C|55012|protein phosphatase 2, regulatory subunit B'', gamma	2.130098	0.0	denovo_WM_7:56:0.328	denovo_WM_7:71:0.336	denovo_WM_7:-94:0.613
chr2	10105533	10105661	reg1014254.p2	4.031	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	-13747	+	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	-121977	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-334472	-	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	78195	+	NM_001177718 AK302880 TSC_hg19_v1_chr2_+_10184414	78812	+	AB463821 TSC_hg19_v1_chr2_+_10186406	80748	+	NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11##NM_001177718|KLF11|8462|Kruppel-like factor 11##AK302880|KLF11|8462|Kruppel-like factor 11	0.973788	0.0	denovo_WM_7:-4:0.644	denovo_WM_7:-5:0.330
chr4	154412484	154412621	reg1015487.p1	4.031	+	TSC_hg19_v1_chr4_+_154387511 NM_001131007 NM_015196 AK092270 AX747443 AK308448	-25060	+	AK312172 BC032142 TSC_hg19_v1_chr4_+_154265868 AY028916	-146677	+	TSC_hg19_v1_chr4_+_154265799 NM_001253861 NM_032117	-146765	+	TSC_hg19_v1_chr4_+_154605403 AF424049 AF424050 AF424051 AF424052 AF424053	192846	+	TSC_hg19_v1_chr4_+_154605431 NM_003264	192878	+	TSC_hg19_v1_chr4_+_154605441 BC033756	192912	+	NM_001131007|KIAA0922|23240|KIAA0922##NM_015196|KIAA0922|23240|KIAA0922##AK092270|KIAA0922|23240|KIAA0922##AK308448|KIAA0922|23240|KIAA0922##AK312172|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC032142|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##AY028916|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_001253861|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_032117|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##AF424049|TLR2|7097|toll-like receptor 2##NM_003264|TLR2|7097|toll-like receptor 2##BC033756|TLR2|7097|toll-like receptor 2	0.0	0.0	
chr6	37157510	37157668	reg1013329.p1	4.031	+	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	-19467	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-184088	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-203319	-	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	67797	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	68010	+	TSC_hg19_v1_chr6_-_37225916 BC009625 NM_001162900	68338	-	NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK315067|MTCH1|23787|mitochondrial carrier 1##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B##BC009625|TMEM217|221468|transmembrane protein 217##NM_001162900|TMEM217|221468|transmembrane protein 217	2.180209	0.0	denovo_WM_7:-7:0.215	denovo_WM_7:-8:0.218	denovo_WM_7:-9:0.262	denovo_WM_7:-10:0.262	denovo_WM_7:85:0.457	denovo_WM_7:86:0.457
chr7	105174339	105174475	reg1014086.p1	4.031	+	BC068483 NM_021930 AK055508 TSC_hg19_v1_chr7_+_105172647 AK308126 AF317622 HQ257980	-1761	+	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	-11746	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	-145065	-	TSC_hg19_v1_chr7_-_105221933 BC062748 BC105284	47528	-	AK300338 NM_138495	145201	-	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	342578	-	BC068483|RINT1|60561|RAD50 interactor 1##NM_021930|RINT1|60561|RAD50 interactor 1##AK055508|RINT1|60561|RAD50 interactor 1##AK308126|RINT1|60561|RAD50 interactor 1##AF317622|RINT1|60561|RAD50 interactor 1##HQ257980|RINT1|60561|RAD50 interactor 1##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC105284|EFCAB10|100130771|EF-hand calcium binding domain 10##AK300338|ATXN7L1|222255|ataxin 7-like 1##NM_138495|ATXN7L1|222255|ataxin 7-like 1##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1	0.146027	0.0	
chr1	160233090	160233270	reg1000804.p2	4.030	+	TSC_hg19_v1_chr1_-_160232340 NM_015726	-843	-	TSC_hg19_v1_chr1_-_160232278 AK303188	-904	-	BC111063 BC013107 TSC_hg19_v1_chr1_-_160232242 AK026481 AK312690 CR749801	-952	-	AB062286 AB528487 BT006879 DQ891417 DQ894591 BC000496 AB018541 TSC_hg19_v1_chr1_-_160254921 AK294940 AK300368	21735	-	X75535 TSC_hg19_v1_chr1_-_160254924 AK303099 NM_001193644 NM_002857	21757	-	AB385218 TSC_hg19_v1_chr1_-_160313020	79809	-	NM_015726|DCAF8|50717|DDB1 and CUL4 associated factor 8##AK303188|DCAF8|50717|DDB1 and CUL4 associated factor 8##BC111063|DCAF8|50717|DDB1 and CUL4 associated factor 8##BC013107|DCAF8|50717|DDB1 and CUL4 associated factor 8##AK026481|DCAF8|50717|DDB1 and CUL4 associated factor 8##AK312690|DCAF8|50717|DDB1 and CUL4 associated factor 8##CR749801|DCAF8|50717|DDB1 and CUL4 associated factor 8##AB062286|PEX19|5824|peroxisomal biogenesis factor 19##BT006879|PEX19|5824|peroxisomal biogenesis factor 19##DQ891417|PEX19|5824|peroxisomal biogenesis factor 19##DQ894591|PEX19|5824|peroxisomal biogenesis factor 19##BC000496|PEX19|5824|peroxisomal biogenesis factor 19##AB018541|PEX19|5824|peroxisomal biogenesis factor 19##AK300368|PEX19|5824|peroxisomal biogenesis factor 19##X75535|PEX19|5824|peroxisomal biogenesis factor 19##AK303099|PEX19|5824|peroxisomal biogenesis factor 19##NM_001193644|PEX19|5824|peroxisomal biogenesis factor 19##NM_002857|PEX19|5824|peroxisomal biogenesis factor 19	0.995109	0.0	denovo_WM_7:93:0.974
chr12	39749796	39749935	reg1014121.p1	4.030	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-450482	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-1039240	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5574392	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	87134	-	AK314254 NM_005164	263977	-	BC038754 NM_001031748 BC048120 AK097445	270130	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	0.0	0.0	
chr13	99911384	99911508	reg1009423.p1	4.030	+	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-832	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-58327	+	TSC_hg19_v1_chr13_-_99852951 BC043515 AK097488	-58479	-	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	48252	-	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	242254	+	TSC_hg19_v1_chr13_+_100153777 BC130293	242336	+	AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC043515|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK097488|UBAC2-AS1|100289373|UBAC2 antisense RNA 1 (non-protein coding)##AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.0	0.0	
chr16	4302142	4302282	reg1014476.p1	4.030	+	AL831973 AL832361 BX647476 AK056588 NM_001098814	-10146	-	AJ133123 NM_001116 TSC_hg19_v1_chr16_-_4166252	-135982	-	BC151207 AB011092 BC151229 TSC_hg19_v1_chr16_-_4166045	-136178	-	TSC_hg19_v1_chr16_-_4303791 AK094828	1569	-	X57435 DQ893617 DQ895293 CR541726 CU679751 AB464303 TSC_hg19_v1_chr16_-_4322885 BC010576	20616	-	NM_003223 S73885 TSC_hg19_v1_chr16_-_4323025	20800	-	AL831973|SRL|6345|sarcalumenin##AL832361|SRL|6345|sarcalumenin##BX647476|SRL|6345|sarcalumenin##AK056588|SRL|6345|sarcalumenin##NM_001098814|SRL|6345|sarcalumenin##AJ133123|ADCY9|115|adenylate cyclase 9##NM_001116|ADCY9|115|adenylate cyclase 9##BC151207|ADCY9|115|adenylate cyclase 9##AB011092|ADCY9|115|adenylate cyclase 9##BC151229|ADCY9|115|adenylate cyclase 9##AK094828|LOC100507501|100507501|uncharacterized LOC100507501##X57435|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ893617|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##DQ895293|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##CR541726|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##BC010576|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##NM_003223|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)##S73885|TFAP4|7023|transcription factor AP-4 (activating enhancer binding protein 4)	0.0	0.0	
chr17	80666450	80666530	reg1003198.p2	4.030	+	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	-9956	-	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	-60207	-	TSC_hg19_v1_chr17_+_80477607 NM_004514	-188900	+	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	8116	+	TSC_hg19_v1_chr17_+_80693490 NM_022158 AK294871 BC042680 AJ404615 CU692116	26972	+	TSC_hg19_v1_chr17_+_80709949 BC003094 NM_005993 AB023205 AK293471 BC006364	43464	+	BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##NM_004514|FOXK2|3607|forkhead box K2##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein##NM_022158|FN3K|64122|fructosamine 3 kinase##AK294871|FN3K|64122|fructosamine 3 kinase##BC042680|FN3K|64122|fructosamine 3 kinase##AJ404615|FN3K|64122|fructosamine 3 kinase##BC003094|TBCD|6904|tubulin folding cofactor D##NM_005993|TBCD|6904|tubulin folding cofactor D##AB023205|TBCD|6904|tubulin folding cofactor D##AK293471|TBCD|6904|tubulin folding cofactor D##BC006364|TBCD|6904|tubulin folding cofactor D	1.444405	0.0	denovo_WM_7:66:0.443	denovo_WM_7:67:0.442	denovo_WM_7:90:0.293
chr19	3990134	3990314	reg1016944.p2	4.030	+	AK297398 AK298498 NM_001961 TSC_hg19_v1_chr19_-_3985462	-4762	-	TSC_hg19_v1_chr19_-_3985455 BC126259 BC136313 BC068002 BC006547 AK299225	-4823	-	TSC_hg19_v1_chr19_-_3984195 AB527843 AY942181 HQ258667 X51466 Z11692	-5973	-	TSC_hg19_v1_chr19_+_4007733 BC066895 AK022481 BC029874 NM_015897 AK222726 AB464092 AF077952 DQ892419 DQ895633 BC010047	17505	+	TSC_hg19_v1_chr19_-_4065504 BC084568	75272	-	BC113511 TSC_hg19_v1_chr19_-_4066828 AF000561 NM_015898 BC064505	76593	-	AK297398|EEF2|1938|eukaryotic translation elongation factor 2##AK298498|EEF2|1938|eukaryotic translation elongation factor 2##NM_001961|EEF2|1938|eukaryotic translation elongation factor 2##BC126259|EEF2|1938|eukaryotic translation elongation factor 2##BC136313|EEF2|1938|eukaryotic translation elongation factor 2##BC006547|EEF2|1938|eukaryotic translation elongation factor 2##AK299225|EEF2|1938|eukaryotic translation elongation factor 2##AY942181|EEF2|1938|eukaryotic translation elongation factor 2##HQ258667|EEF2|1938|eukaryotic translation elongation factor 2##X51466|EEF2|1938|eukaryotic translation elongation factor 2##Z11692|EEF2|1938|eukaryotic translation elongation factor 2##BC066895|PIAS4|51588|protein inhibitor of activated STAT, 4##AK022481|PIAS4|51588|protein inhibitor of activated STAT, 4##BC029874|PIAS4|51588|protein inhibitor of activated STAT, 4##NM_015897|PIAS4|51588|protein inhibitor of activated STAT, 4##AK222726|PIAS4|51588|protein inhibitor of activated STAT, 4##AF077952|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ892419|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ895633|PIAS4|51588|protein inhibitor of activated STAT, 4##BC010047|PIAS4|51588|protein inhibitor of activated STAT, 4##BC084568|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC113511|ZBTB7A|51341|zinc finger and BTB domain containing 7A##AF000561|ZBTB7A|51341|zinc finger and BTB domain containing 7A##NM_015898|ZBTB7A|51341|zinc finger and BTB domain containing 7A	0.995741	0.0	denovo_WM_7:-87:0.437	denovo_WM_7:-88:0.438
chr2	132251864	132251994	reg1012025.p2	4.030	+	AK304811 TSC_hg19_v1_chr2_+_132250648 AK293811 AK300337 AK303293 AK308371 BC093080	-1344	+	TSC_hg19_v1_chr2_-_132250072 NM_001085365	-1868	-	BC063024 TSC_hg19_v1_chr2_-_132249961 BC018206	-1973	-	BC063387 AB299086 AB299087 BC016861 NM_138770 CU677751 CU687684	33577	+	AF038169 NM_013310	228134	+	BC043584 NM_214461	307304	-	AK304811|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK293811|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK300337|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK303293|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK308371|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##BC093080|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##NM_001085365|MZT2A|653784|mitotic spindle organizing protein 2A##BC063024|MZT2A|653784|mitotic spindle organizing protein 2A##BC018206|MZT2A|653784|mitotic spindle organizing protein 2A##BC063387|CCDC74A|90557|coiled-coil domain containing 74A##AB299086|CCDC74A|90557|coiled-coil domain containing 74A##AB299087|CCDC74A|90557|coiled-coil domain containing 74A##BC016861|CCDC74A|90557|coiled-coil domain containing 74A##NM_138770|CCDC74A|90557|coiled-coil domain containing 74A##AF038169|C2orf27A|29798|chromosome 2 open reading frame 27A##NM_013310|C2orf27A|29798|chromosome 2 open reading frame 27A##BC043584|C2orf27B|408029|chromosome 2 open reading frame 27B##NM_214461|C2orf27B|408029|chromosome 2 open reading frame 27B	0.95969	0.0	denovo_WM_7:46:0.280	denovo_WM_7:47:0.280
chr21	45359097	45359177	reg1008159.p4	4.030	+	AK300562 NM_001037553	-13859	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-74014	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-74077	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	73203	+	TSC_hg19_v1_chr21_+_45527202 AK314184	168065	+	TSC_hg19_v1_chr21_+_45527251 NM_005049	168091	+	AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##NM_005049|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.0	1.023494	CTCF.p2:-29:0.976
chr4	134999666	134999846	reg1014728.p1	4.030	+	AK024636 TSC_hg19_v1_chr4_+_134073255 AL157470	-926473	+	TSC_hg19_v1_chr4_+_134070448 AB037821 AY013874 NM_020815 NM_032961	-929300	+	NM_001099783	-4982475	+	NM_001114734 TSC_hg19_v1_chr4_-_135122935	123162	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	3453836	-	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	3453886	-	AK024636|PCDH10|57575|protocadherin 10##AL157470|PCDH10|57575|protocadherin 10##AB037821|PCDH10|57575|protocadherin 10##AY013874|PCDH10|57575|protocadherin 10##NM_020815|PCDH10|57575|protocadherin 10##NM_032961|PCDH10|57575|protocadherin 10##NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18	0.998908	0.0	denovo_WM_7:58:0.307	denovo_WM_7:59:0.307	denovo_WM_7:60:0.307
chr5	143199959	143200108	reg1008426.p2	4.030	+	AF103884 NM_021182 BC096711 BC098145 BC098244 BC098251 BC104412 BC104413 BC113894 BC113971	-8275	+	NM_001018074 NM_001018075 NM_001018077	-384957	-	TSC_hg19_v1_chr5_-_142784107 BX640610 AJ877167	-415867	-	TSC_hg19_v1_chr5_-_143550130 AK223515 AK307251	350102	-	TSC_hg19_v1_chr5_-_143550202 AY358863 AF318329 AK124065 AY640925 AY640926 AY640927 AY640928 AY640929 AY640934 BC007829 AY037152 AK054576 BC024737	350143	-	BC014253 BX647859 CR749463 TSC_hg19_v1_chr5_-_143550217 NM_001024947 NM_030799	350213	-	AF103884|HMHB1|57824|histocompatibility (minor) HB-1##NM_021182|HMHB1|57824|histocompatibility (minor) HB-1##BC096711|HMHB1|57824|histocompatibility (minor) HB-1##BC098145|HMHB1|57824|histocompatibility (minor) HB-1##BC098244|HMHB1|57824|histocompatibility (minor) HB-1##BC098251|HMHB1|57824|histocompatibility (minor) HB-1##BC104412|HMHB1|57824|histocompatibility (minor) HB-1##BC104413|HMHB1|57824|histocompatibility (minor) HB-1##BC113894|HMHB1|57824|histocompatibility (minor) HB-1##BC113971|HMHB1|57824|histocompatibility (minor) HB-1##NM_001018074|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018075|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##NM_001018077|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BX640610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877167|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223515|YIPF5|81555|Yip1 domain family, member 5##AK307251|YIPF5|81555|Yip1 domain family, member 5##AY358863|YIPF5|81555|Yip1 domain family, member 5##AF318329|YIPF5|81555|Yip1 domain family, member 5##AK124065|YIPF5|81555|Yip1 domain family, member 5##AY640925|YIPF5|81555|Yip1 domain family, member 5##AY640926|YIPF5|81555|Yip1 domain family, member 5##AY640927|YIPF5|81555|Yip1 domain family, member 5##AY640928|YIPF5|81555|Yip1 domain family, member 5##AY640929|YIPF5|81555|Yip1 domain family, member 5##AY640934|YIPF5|81555|Yip1 domain family, member 5##BC007829|YIPF5|81555|Yip1 domain family, member 5##AY037152|YIPF5|81555|Yip1 domain family, member 5##AK054576|YIPF5|81555|Yip1 domain family, member 5##BC024737|YIPF5|81555|Yip1 domain family, member 5##BC014253|YIPF5|81555|Yip1 domain family, member 5##BX647859|YIPF5|81555|Yip1 domain family, member 5##CR749463|YIPF5|81555|Yip1 domain family, member 5##NM_001024947|YIPF5|81555|Yip1 domain family, member 5##NM_030799|YIPF5|81555|Yip1 domain family, member 5	0.0	0.0	
chr7	132485322	132485432	reg1014655.p1	4.030	+	BC028744 NM_181775	-151931	-	TSC_hg19_v1_chr7_-_132261268 NM_001105543 NM_020911	-224082	-	AK123428 TSC_hg19_v1_chr7_-_132261230	-224147	-	AB528286 TSC_hg19_v1_chr7_-_132766813 AK294071 AK000427 NM_017812 AK310236	281387	-	TSC_hg19_v1_chr7_-_132766851 BC011596 BC014839 AK129533	281469	-	TSC_hg19_v1_chr7_+_132937838 NM_001037126 NM_021807 AF380839 AK027688 AL831989 AK298191 BC067263 BC026174 CU693148 AB051486	452472	+	BC028744|PLXNA4|91584|plexin A4##NM_181775|PLXNA4|91584|plexin A4##NM_001105543|PLXNA4|91584|plexin A4##NM_020911|PLXNA4|91584|plexin A4##AK123428|PLXNA4|91584|plexin A4##AK294071|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK000427|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_017812|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK310236|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC011596|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC014839|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK129533|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_001037126|EXOC4|60412|exocyst complex component 4##NM_021807|EXOC4|60412|exocyst complex component 4##AF380839|EXOC4|60412|exocyst complex component 4##AK027688|EXOC4|60412|exocyst complex component 4##AL831989|EXOC4|60412|exocyst complex component 4##AK298191|EXOC4|60412|exocyst complex component 4##BC067263|EXOC4|60412|exocyst complex component 4##BC026174|EXOC4|60412|exocyst complex component 4##AB051486|EXOC4|60412|exocyst complex component 4	0.0	0.0	
chr10	102802856	102802937	reg1013673.p1	4.029	+	TSC_hg19_v1_chr10_+_102792167 AK299405 BC000124	-10707	+	AK074707 TSC_hg19_v1_chr10_+_102792161	-10735	+	TSC_hg19_v1_chr10_+_102790985 NM_030971	-11907	+	TSC_hg19_v1_chr10_+_102820998 AK172864 NM_030929	18082	+	TSC_hg19_v1_chr10_+_102821745 BC007758 AY359087 AK225949 AK172862	18763	+	BC019674 NM_001085398	88006	-	AK299405|SFXN3|81855|sideroflexin 3##BC000124|SFXN3|81855|sideroflexin 3##AK074707|SFXN3|81855|sideroflexin 3##NM_030971|SFXN3|81855|sideroflexin 3##AK172864|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##NM_030929|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##BC007758|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AY359087|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK225949|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##AK172862|KAZALD1|81621|Kazal-type serine peptidase inhibitor domain 1##BC019674|TLX1NB|100038246|TLX1 neighbor##NM_001085398|TLX1NB|100038246|TLX1 neighbor	0.0	0.0	
chr15	67926755	67926904	reg1011135.p1	4.029	+	AK293459 NM_001206804	-85488	+	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	-91807	+	TSC_hg19_v1_chr15_-_67814131 BC047537	-112673	-	NM_001031807	191111	+	AF167160 NM_016166 BC118587 BC121797 TSC_hg19_v1_chr15_+_68346652 AK314515 BC104646	419783	+	TSC_hg19_v1_chr15_+_68346659 BC053685 AB590990 AF077951 EF487997 EF487998 FJ997900 AY826819	419832	+	AK293459|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_001206804|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5##BC047537|LOC100506686|100506686|uncharacterized LOC100506686##NM_001031807|SKOR1|390598|SKI family transcriptional corepressor 1##AF167160|PIAS1|8554|protein inhibitor of activated STAT, 1##NM_016166|PIAS1|8554|protein inhibitor of activated STAT, 1##BC118587|PIAS1|8554|protein inhibitor of activated STAT, 1##BC121797|PIAS1|8554|protein inhibitor of activated STAT, 1##AK314515|PIAS1|8554|protein inhibitor of activated STAT, 1##BC104646|PIAS1|8554|protein inhibitor of activated STAT, 1##BC053685|PIAS1|8554|protein inhibitor of activated STAT, 1##AF077951|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487997|PIAS1|8554|protein inhibitor of activated STAT, 1##EF487998|PIAS1|8554|protein inhibitor of activated STAT, 1##FJ997900|PIAS1|8554|protein inhibitor of activated STAT, 1##AY826819|PIAS1|8554|protein inhibitor of activated STAT, 1	1.67474	0.0	denovo_WM_7:-85:0.533	denovo_WM_7:-100:0.552
chr2	109225531	109225597	reg1008906.p1	4.029	+	TSC_hg19_v1_chr2_+_109223602 AF527762 NM_001193482	-1947	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	-20595	+	TSC_hg19_v1_chr2_+_109204792 AF527763	-20779	+	TSC_hg19_v1_chr2_+_109237706 AK304260 NM_001193484 AF527760 AK310547	12139	+	AF527759 NM_001193485	45703	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	45924	+	AF527762|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193482|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527763|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK304260|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193484|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527760|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK310547|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527759|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193485|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3	0.0	0.0	
chr22	19760557	19760704	reg1010776.p1	4.029	+	AF012130 AF012131 AF373867 NM_005992 NM_080646 NM_080647	-16405	+	NM_000407 J03259	-49563	+	L20860 TSC_hg19_v1_chr22_+_19710169	-50487	+	TSC_hg19_v1_chr22_-_19842337 AK291262 BX640785 BX640969 BX640998	81711	-	TSC_hg19_v1_chr22_-_19842398 BC012060 NM_024627 BC008696 AB051432 AL832509 AF301895 AF238328 AY007378 NM_053004	81775	-	TSC_hg19_v1_chr22_-_19929293 AB209724	168648	-	AF012130|TBX1|6899|T-box 1##AF012131|TBX1|6899|T-box 1##AF373867|TBX1|6899|T-box 1##NM_005992|TBX1|6899|T-box 1##NM_080646|TBX1|6899|T-box 1##NM_080647|TBX1|6899|T-box 1##NM_000407|GP1BB|2812|glycoprotein Ib (platelet), beta polypeptide##J03259|GP1BB|2812|glycoprotein Ib (platelet), beta polypeptide##L20860|SEPT5-GP1BB|100526833|SEPT5-GP1BB readthrough##AK291262|C22orf29|79680|chromosome 22 open reading frame 29##BX640785|C22orf29|79680|chromosome 22 open reading frame 29##BX640969|C22orf29|79680|chromosome 22 open reading frame 29##BX640998|C22orf29|79680|chromosome 22 open reading frame 29##BC012060|GNB1L|54584|guanine nucleotide binding protein (G protein), beta polypeptide 1-like##NM_024627|C22orf29|79680|chromosome 22 open reading frame 29##BC008696|C22orf29|79680|chromosome 22 open reading frame 29##AB051432|GNB1L|54584|guanine nucleotide binding protein (G protein), beta polypeptide 1-like##AL832509|C22orf29|79680|chromosome 22 open reading frame 29##AF301895|GNB1L|54584|guanine nucleotide binding protein (G protein), beta polypeptide 1-like##AF238328|GNB1L|54584|guanine nucleotide binding protein (G protein), beta polypeptide 1-like##AY007378|GNB1L|54584|guanine nucleotide binding protein (G protein), beta polypeptide 1-like##NM_053004|GNB1L|54584|guanine nucleotide binding protein (G protein), beta polypeptide 1-like##AB209724|TXNRD2|10587|thioredoxin reductase 2	0.0	0.020168	
chr4	2698161	2698273	reg1014239.p1	4.029	+	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	-71044	+	NM_001185009 BC031935	-227037	+	TSC_hg19_v1_chr4_+_2470846 AK312534 AK309509 U95140	-227341	+	AK026176 NM_001161527	59533	-	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	59846	-	TSC_hg19_v1_chr4_+_2794755 AK225497 NM_001122681 BC022996	96518	+	AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##NM_001185009|RNF4|6047|ring finger protein 4##BC031935|RNF4|6047|ring finger protein 4##AK312534|RNF4|6047|ring finger protein 4##AK309509|RNF4|6047|ring finger protein 4##U95140|RNF4|6047|ring finger protein 4##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2##AK225497|SH3BP2|6452|SH3-domain binding protein 2##NM_001122681|SH3BP2|6452|SH3-domain binding protein 2##BC022996|SH3BP2|6452|SH3-domain binding protein 2	0.0	0.0	
chr5	106700281	106700387	reg1008387.p2	4.029	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3801853	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4105877	+	BC024591 NM_015216 AB463068	-4235060	+	AK308672 NM_001962 U26403	306256	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1016796	-	BC063316 NM_001163315	1017464	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	2.929936	0.0	denovo_WM_7:-62:0.914
chr10	76658701	76658835	reg1006156.p2	4.028	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	-72414	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-722181	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-722238	+	AY686755 NM_001003892 BC137321 BC137322	159537	-	AB027004 AB103375 NM_016364	200479	-	BC009778 AY040091 AK057012 AY674051 AK291897 AK300679 AK127886 NM_001007271 NM_001007272 NM_001007273 AK291891	210146	-	AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13##BC009778|DUSP13|51207|dual specificity phosphatase 13##AY040091|DUSP13|51207|dual specificity phosphatase 13##AK057012|DUSP13|51207|dual specificity phosphatase 13##AY674051|DUSP13|51207|dual specificity phosphatase 13##AK291897|DUSP13|51207|dual specificity phosphatase 13##AK300679|DUSP13|51207|dual specificity phosphatase 13##AK127886|DUSP13|51207|dual specificity phosphatase 13##NM_001007271|DUSP13|51207|dual specificity phosphatase 13##NM_001007272|DUSP13|51207|dual specificity phosphatase 13##NM_001007273|DUSP13|51207|dual specificity phosphatase 13##AK291891|DUSP13|51207|dual specificity phosphatase 13	0.992732	0.0	denovo_WM_7:-4:0.971
chr11	60331218	60331398	reg1015154.p1	4.028	+	AY324188 AY324189 AY324190 NM_001012417 NM_001100909 BC140799 BC171746	-48360	+	AK000224 AK309275 NM_001164470 NM_017716 BC029793	-71052	+	NM_021950 NM_152866 AK225630 AK292168 AK300025 AK310118 BC002807 X07203 X12530	-107995	+	AF237905 NM_031457 AK310969 AK310884 AK315901 BC022895 AK308413 AF350504 AK310872	135824	+	NM_001098835 NM_152717 AK300233 BC031610 AK091846 AX747218 AY584608 AY584609	193101	+	AK122633 NM_206893 BC137259 BC137263	221537	+	AY324188|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324189|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AY324190|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001012417|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##NM_001100909|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC140799|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##BC171746|MS4A13|503497|membrane-spanning 4-domains, subfamily A, member 13##AK000224|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_001164470|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_017716|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##BC029793|MS4A12|54860|membrane-spanning 4-domains, subfamily A, member 12##NM_021950|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##NM_152866|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK225630|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK292168|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK300025|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AK310118|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##BC002807|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X07203|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##X12530|MS4A1|931|membrane-spanning 4-domains, subfamily A, member 1##AF237905|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##NM_031457|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310969|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310884|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK315901|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##BC022895|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK308413|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AF350504|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##AK310872|MS4A8B|83661|membrane-spanning 4-domains, subfamily A, member 8B##NM_001098835|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##NM_152717|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK300233|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##BC031610|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK091846|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AY584608|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AY584609|MS4A15|219995|membrane-spanning 4-domains, subfamily A, member 15##AK122633|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##NM_206893|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##BC137259|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10##BC137263|MS4A10|341116|membrane-spanning 4-domains, subfamily A, member 10	0.0	0.0	
chr17	57426662	57426762	reg1013613.p1	4.028	+	TSC_hg19_v1_chr17_+_57409043 NM_001005404 BC132884 BC132886 AK097253 AB098736	-17694	+	NM_001165993 NM_001165994 NM_182569 AK094770 AY271346 BC034432 EU192951	-128814	+	AF349467 NM_018149 TSC_hg19_v1_chr17_+_57287384 AL834490 AK026858 BC031604	-139315	+	AF461690 NM_001166301 NM_024612 TSC_hg19_v1_chr17_+_57642970 BC024187 AK299151 AK095681 AF260270 AK226048 AB384723 DQ890909 DQ894060	216275	+	TSC_hg19_v1_chr17_+_57697037 NM_004859	270333	+	TSC_hg19_v1_chr17_+_57697265 BC054489 BX640615	270558	+	NM_001005404|YPEL2|388403|yippee-like 2 (Drosophila)##BC132884|YPEL2|388403|yippee-like 2 (Drosophila)##BC132886|YPEL2|388403|yippee-like 2 (Drosophila)##AK097253|YPEL2|388403|yippee-like 2 (Drosophila)##AB098736|YPEL2|388403|yippee-like 2 (Drosophila)##NM_001165993|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_001165994|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##NM_182569|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AK094770|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AY271346|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##BC034432|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##EU192951|GDPD1|284161|glycerophosphodiester phosphodiesterase domain containing 1##AF349467|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_018149|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL834490|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK026858|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC031604|SMG8|55181|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)##AF461690|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_001166301|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_024612|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##BC024187|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK299151|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK095681|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AF260270|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##AK226048|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ890909|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##DQ894060|DHX40|79665|DEAH (Asp-Glu-Ala-His) box polypeptide 40##NM_004859|CLTC|1213|clathrin, heavy chain (Hc)##BC054489|CLTC|1213|clathrin, heavy chain (Hc)##BX640615|CLTC|1213|clathrin, heavy chain (Hc)	1.868689	0.0	denovo_WM_7:4:0.370	denovo_WM_7:5:0.464	denovo_WM_7:19:0.202	denovo_WM_7:20:0.663
chr3	140224323	140224437	reg1009266.p2	4.028	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-570128	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-570362	+	TSC_hg19_v1_chr3_-_139396815 AK123208 BC034374 BC036218 NM_001200047 NM_178177	-827552	-	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	172579	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	436387	+	TSC_hg19_v1_chr3_+_140770412 BC051354	546098	+	AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##AK123208|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC034374|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC036218|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_001200047|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_178177|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.0	0.0	
chr5	35263297	35263477	reg1003844.p1	4.028	+	NM_000949	-32565	-	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	-32810	-	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	-145164	-	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	354622	+	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	593646	+	NM_001042625 BC017586 NM_144647	675421	-	NM_000949|PRLR|5618|prolactin receptor##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like	0.031732	0.0	
chr6_qbl_hap6	3169023	3169089	reg1012493.p1	4.028	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.979389	0.0	
chr8	121306500	121306605	reg1003029.p1	4.028	+	TSC_hg19_v1_chr8_+_121137341 NM_021110 Y11709 AK293080 AK307716 AK311498	-169197	+	NM_022783 TSC_hg19_v1_chr8_+_120885965 AK315175 AK225168 AK297822 AL136678 AK225675 BC024746 AK022490 BC012040 AM392576 AM393333 AB527130 AK023916	-420548	+	DQ891267 DQ894455 TSC_hg19_v1_chr8_-_120868155 AK315356 AK074355 BC001531 AY358866 AK054585 BC001316 NM_024094	-438438	-	CU692406 DQ893117 DQ893487 DQ896395 AK307322 TSC_hg19_v1_chr8_-_121457370 AB049640 AF112214 BC009190	150803	-	TSC_hg19_v1_chr8_-_121457391 AK311924	150841	-	BC021744 NM_014078	151083	-	NM_021110|COL14A1|7373|collagen, type XIV, alpha 1##Y11709|COL14A1|7373|collagen, type XIV, alpha 1##AK293080|COL14A1|7373|collagen, type XIV, alpha 1##AK307716|COL14A1|7373|collagen, type XIV, alpha 1##AK311498|COL14A1|7373|collagen, type XIV, alpha 1##NM_022783|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK315175|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225168|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK297822|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AL136678|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225675|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC024746|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK022490|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC012040|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM392576|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM393333|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK023916|DEPTOR|64798|DEP domain containing MTOR-interacting protein##DQ891267|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ894455|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK315356|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK074355|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001531|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AY358866|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK054585|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001316|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##NM_024094|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ893117|MRPL13|28998|mitochondrial ribosomal protein L13##DQ893487|MRPL13|28998|mitochondrial ribosomal protein L13##DQ896395|MRPL13|28998|mitochondrial ribosomal protein L13##AK307322|MRPL13|28998|mitochondrial ribosomal protein L13##AB049640|MRPL13|28998|mitochondrial ribosomal protein L13##AF112214|MRPL13|28998|mitochondrial ribosomal protein L13##BC009190|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13##BC021744|MRPL13|28998|mitochondrial ribosomal protein L13##NM_014078|MRPL13|28998|mitochondrial ribosomal protein L13	0.0	0.0	
chr8	131092639	131092767	reg1013298.p1	4.028	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-63820	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-64009	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-64044	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	363328	-	NM_001115	960131	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1823654	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.998968	0.0	denovo_WM_7:29:0.310	denovo_WM_7:30:0.310	denovo_WM_7:31:0.310
chr8	140083462	140083567	reg1014669.p1	4.028	+	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	-157270	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	-574408	-	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-3613313	+	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	631768	-	AB067469 TSC_hg19_v1_chr8_-_141467841	1384311	-	AK026394 TSC_hg19_v1_chr8_-_141467862 NM_001160372	1384344	-	AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9##AB067469|TRAPPC9|83696|trafficking protein particle complex 9##AK026394|TRAPPC9|83696|trafficking protein particle complex 9##NM_001160372|TRAPPC9|83696|trafficking protein particle complex 9	0.741618	0.0	denovo_WM_7:5:0.207	denovo_WM_7:6:0.511
chr10	66124611	66124755	reg1016275.p2	4.027	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-843442	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-843521	+	TSC_hg19_v1_chr10_+_65281112 BC068557 NM_001001330	-843568	+	NM_178011 BX640611 AY358315 BC111492	2561132	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	3300713	-	AF091606 AK313882 NM_013266	3331254	-	BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##BC068557|REEP3|221035|receptor accessory protein 3##NM_001001330|REEP3|221035|receptor accessory protein 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	1.979878	0.0	denovo_WM_7:69:0.397	denovo_WM_7:72:0.323	denovo_WM_7:93:0.787
chr1	153822094	153822200	reg1010823.p2	4.027	+	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	-74281	+	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	-121594	+	TSC_hg19_v1_chr1_+_153651222 BC063304 AK025024 NM_000906 X15357	-170851	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	73304	-	TSC_hg19_v1_chr1_-_153919148 AB007945 NM_014856	96999	-	AY726597 AK096382 BC053562 TSC_hg19_v1_chr1_-_153931074 AF289574	108846	-	BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##BC063304|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK025024|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_000906|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##X15357|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B##AB007945|DENND4B|9909|DENN/MADD domain containing 4B##NM_014856|DENND4B|9909|DENN/MADD domain containing 4B##AY726597|CRTC2|200186|CREB regulated transcription coactivator 2##AK096382|CRTC2|200186|CREB regulated transcription coactivator 2##BC053562|CRTC2|200186|CREB regulated transcription coactivator 2##AF289574|CRTC2|200186|CREB regulated transcription coactivator 2	0.914295	0.0	denovo_WM_7:-27:0.410	denovo_WM_7:-29:0.260
chr15	38716663	38716803	reg1013179.p1	4.027	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	-171711	+	TSC_hg19_v1_chr15_+_38544515 AK091222 AX746859 BC137480 BC137481	-172338	+	BC029221 NM_152453	-489277	+	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	29612	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	140198	-	AK093014 AX747856 BC119016 BC119810 NM_207444	272065	+	NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AK091222|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137480|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC137481|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC029221|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_152453|TMCO5A|145942|transmembrane and coiled-coil domains 5A##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53	0.292287	0.0	denovo_WM_7:64:0.207
chr16	75687907	75688088	reg1010427.p1	4.027	+	AK307901 NM_018975 TSC_hg19_v1_chr16_+_75681715 AK000669 BC022428 BC004465 BC005841 BC016739 BC078171 AF289599 AF250393 AB464292 CU678732 AF262988	-6290	+	BC013246 CU678582 DQ892301 DQ895500 TSC_hg19_v1_chr16_-_75681564 BC004132 D31890 AF285758 AK126584 D32053 AK315687 NM_001130089 NM_005548	-6436	-	AK001687 AK314652 TSC_hg19_v1_chr16_-_75657163 BC002758 AK296834 NM_012091	-30811	-	AB051550 NM_033401 TSC_hg19_v1_chr16_+_76311298	623243	+	NM_138994 AK057327 BC017266	655758	+	TSC_hg19_v1_chr16_+_77224857 BC024277 NM_014940	1536845	+	AK307901|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##NM_018975|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AK000669|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC022428|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC004465|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC005841|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC016739|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC078171|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF289599|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF250393|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##AF262988|TERF2IP|54386|telomeric repeat binding factor 2, interacting protein##BC013246|KARS|3735|lysyl-tRNA synthetase##DQ892301|KARS|3735|lysyl-tRNA synthetase##DQ895500|KARS|3735|lysyl-tRNA synthetase##BC004132|KARS|3735|lysyl-tRNA synthetase##D31890|KARS|3735|lysyl-tRNA synthetase##AF285758|KARS|3735|lysyl-tRNA synthetase##AK126584|KARS|3735|lysyl-tRNA synthetase##D32053|KARS|3735|lysyl-tRNA synthetase##AK315687|KARS|3735|lysyl-tRNA synthetase##NM_001130089|KARS|3735|lysyl-tRNA synthetase##NM_005548|KARS|3735|lysyl-tRNA synthetase##AK001687|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK314652|ADAT1|23536|adenosine deaminase, tRNA-specific 1##BC002758|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK296834|ADAT1|23536|adenosine deaminase, tRNA-specific 1##NM_012091|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AB051550|CNTNAP4|85445|contactin associated protein-like 4##NM_033401|CNTNAP4|85445|contactin associated protein-like 4##NM_138994|CNTNAP4|85445|contactin associated protein-like 4##AK057327|CNTNAP4|85445|contactin associated protein-like 4##BC017266|CNTNAP4|85445|contactin associated protein-like 4##BC024277|MON1B|22879|MON1 homolog B (yeast)##NM_014940|MON1B|22879|MON1 homolog B (yeast)	1.026156	0.0	
chr1	8537184	8537364	reg1002925.p1	4.027	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-53257	-	NM_001080397	-152885	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-450876	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	340318	-	GU170215 NM_001201483	394360	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	401433	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.0	0.0	
chr2	155341279	155341406	reg1009964.p2	4.027	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-612898	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1006091	-	BC070140 TSC_hg19_v1_chr2_+_153575135 AF530059	-1766198	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	213847	+	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1845348	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1847821	-	NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC070140|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AF530059|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2	0.9971	0.0	denovo_WM_7:-35:0.309	denovo_WM_7:-36:0.309	denovo_WM_7:-37:0.309
chr6	24940661	24940803	reg1012158.p1	4.027	+	TSC_hg19_v1_chr6_-_24936189 AK299047	-4549	-	AB002384 NM_014722	-29538	-	U49187 AK300138 BC001232 NM_015864	-63215	-	TSC_hg19_v1_chr6_+_25279316 BC040903	338586	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	338926	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	339162	+	AK299047|FAM65B|9750|family with sequence similarity 65, member B##AB002384|FAM65B|9750|family with sequence similarity 65, member B##NM_014722|FAM65B|9750|family with sequence similarity 65, member B##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A	0.0	0.0	
chr7	6146078	6146258	reg1002455.p1	4.027	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-1570	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-1625	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-47321	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	166063	-	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	242342	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	268059	+	AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	0.0	0.013895	
chr10	11500868	11500974	reg1012526.p1	4.026	+	TSC_hg19_v1_chr10_+_11207490 AK295511	-293429	+	TSC_hg19_v1_chr10_+_11207446 AK302681 AK310038	-293475	+	TSC_hg19_v1_chr10_+_11207418 AK304216	-293496	+	NM_001080491	73352	-	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	152715	-	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	283477	+	AK295511|CELF2|10659|CUGBP, Elav-like family member 2##AK302681|CELF2|10659|CUGBP, Elav-like family member 2##AK310038|CELF2|10659|CUGBP, Elav-like family member 2##AK304216|CELF2|10659|CUGBP, Elav-like family member 2##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3	1.061125	0.0	
chr10	84038313	84038417	reg1014145.p1	4.026	+	DQ857894 NM_001165973	-400923	+	BC136811 NM_001010848 NM_001165972 DQ001411 HM068873 HM068874	-403283	+	AK123978 NM_001145719	-1737791	+	NM_014394 TSC_hg19_v1_chr10_+_85899313 AK299937 AF078863 AF131820 AL136713 AF161400 AK130094 BC022872 AK225318 AF060923 AK098770 AK298332 BC010354 AK130097 AK297960 AK292864 AY358824	1860892	+	BC033760 BC051760 TSC_hg19_v1_chr10_-_85931861	1893427	-	NM_207373 TSC_hg19_v1_chr10_+_85933558 AY358751	1895194	+	DQ857894|NRG3|10718|neuregulin 3##NM_001165973|NRG3|10718|neuregulin 3##BC136811|NRG3|10718|neuregulin 3##NM_001010848|NRG3|10718|neuregulin 3##NM_001165972|NRG3|10718|neuregulin 3##DQ001411|NRG3|10718|neuregulin 3##HM068873|NRG3|10718|neuregulin 3##HM068874|NRG3|10718|neuregulin 3##AK123978|SH2D4B|387694|SH2 domain containing 4B##NM_001145719|SH2D4B|387694|SH2 domain containing 4B##NM_014394|GHITM|27069|growth hormone inducible transmembrane protein##AK299937|GHITM|27069|growth hormone inducible transmembrane protein##AF078863|GHITM|27069|growth hormone inducible transmembrane protein##AF131820|GHITM|27069|growth hormone inducible transmembrane protein##AL136713|GHITM|27069|growth hormone inducible transmembrane protein##AF161400|GHITM|27069|growth hormone inducible transmembrane protein##AK130094|GHITM|27069|growth hormone inducible transmembrane protein##BC022872|GHITM|27069|growth hormone inducible transmembrane protein##AK225318|GHITM|27069|growth hormone inducible transmembrane protein##AF060923|GHITM|27069|growth hormone inducible transmembrane protein##AK098770|GHITM|27069|growth hormone inducible transmembrane protein##AK298332|GHITM|27069|growth hormone inducible transmembrane protein##BC010354|GHITM|27069|growth hormone inducible transmembrane protein##AK130097|GHITM|27069|growth hormone inducible transmembrane protein##AK297960|GHITM|27069|growth hormone inducible transmembrane protein##AK292864|GHITM|27069|growth hormone inducible transmembrane protein##AY358824|GHITM|27069|growth hormone inducible transmembrane protein##BC033760|LOC642934|642934|uncharacterized LOC642934##BC051760|LOC642934|642934|uncharacterized LOC642934##NM_207373|C10orf99|387695|chromosome 10 open reading frame 99##AY358751|C10orf99|387695|chromosome 10 open reading frame 99	0.0	0.0	
chr21	47936863	47936997	reg1012970.p1	4.026	+	AK056738 TSC_hg19_v1_chr21_+_47878972 AB273729	-57934	+	TSC_hg19_v1_chr21_+_47878854 AK303351 NM_001146114 NM_001146115 NM_001146116 NM_015151 NM_206889 NM_206890 NM_206891 BC038443 BC033718 AF490768	-58068	+	TSC_hg19_v1_chr21_-_47878602 AK127572	-58329	-	BC001766 TSC_hg19_v1_chr21_-_48024996 BC041935 CS301701 CS301702 NM_006272	88079	-	TSC_hg19_v1_chr21_+_48055078 AK123650	118147	+	NM_001242864 NM_001242865 NM_001242866 NM_001535 NM_206962 TSC_hg19_v1_chr21_+_48055572 AK123352 AY786414 FJ436410 FJ436411 FJ436412 U79286 X99209 U80213 AK312573 AL833586	118613	+	AK056738|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AB273729|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AK303351|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146114|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146115|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_001146116|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_015151|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206889|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206890|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##NM_206891|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC038443|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC033718|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##AF490768|DIP2A|23181|DIP2 disco-interacting protein 2 homolog A (Drosophila)##BC001766|S100B|6285|S100 calcium binding protein B##BC041935|S100B|6285|S100 calcium binding protein B##NM_006272|S100B|6285|S100 calcium binding protein B##AK123650|PRMT2|3275|protein arginine methyltransferase 2##NM_001242864|PRMT2|3275|protein arginine methyltransferase 2##NM_001242865|PRMT2|3275|protein arginine methyltransferase 2##NM_001242866|PRMT2|3275|protein arginine methyltransferase 2##NM_001535|PRMT2|3275|protein arginine methyltransferase 2##NM_206962|PRMT2|3275|protein arginine methyltransferase 2##AK123352|PRMT2|3275|protein arginine methyltransferase 2##AY786414|PRMT2|3275|protein arginine methyltransferase 2##FJ436410|PRMT2|3275|protein arginine methyltransferase 2##FJ436411|PRMT2|3275|protein arginine methyltransferase 2##FJ436412|PRMT2|3275|protein arginine methyltransferase 2##U79286|PRMT2|3275|protein arginine methyltransferase 2##X99209|PRMT2|3275|protein arginine methyltransferase 2##U80213|PRMT2|3275|protein arginine methyltransferase 2##AK312573|PRMT2|3275|protein arginine methyltransferase 2##AL833586|PRMT2|3275|protein arginine methyltransferase 2	1.795715	0.0	denovo_WM_7:42:0.404	denovo_WM_7:57:0.517
chr22	33866991	33867121	reg1011972.p2	4.026	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-412701	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-464330	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-669304	+	AJ007583 AB011181 NM_004737 NM_133642	449314	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1595093	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	1786420	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.989794	0.0	denovo_WM_7:-29:0.237	denovo_WM_7:-30:0.237	denovo_WM_7:-31:0.237	denovo_WM_7:-32:0.236
chr4	144345130	144345250	reg1011152.p1	4.026	+	NM_002039 NM_207123 AK289767 BC064848	-87175	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	-239065	+	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	-239126	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	89538	+	AB384709 TSC_hg19_v1_chr4_+_144435139	89924	+	TSC_hg19_v1_chr4_+_144480613 AX721285 AX721289 BC025996	135426	+	NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC025996|GUSBP5|441046|glucuronidase, beta pseudogene 5	0.0	0.0	
chr5	140795052	140795232	reg1004926.p1	4.026	+	TSC_hg19_v1_chr5_+_140792580 BC014509 BC093873 BC093875 AF152319 AF152503 NM_018913 NM_032090	-2518	+	AF152335 AF152522 NM_018926 NM_032100	-7373	+	TSC_hg19_v1_chr5_+_140782367 BC132769 AF152329 AF152516 NM_018921 NM_032089	-12699	+	TSC_hg19_v1_chr5_+_140797217 NM_032101	2074	+	TSC_hg19_v1_chr5_+_140797246 NM_018927	2109	+	TSC_hg19_v1_chr5_+_140797279 AF152336 AF152523	2206	+	BC014509|PCDHGA10|56106|protocadherin gamma subfamily A, 10##BC093873|PCDHGA10|56106|protocadherin gamma subfamily A, 10##BC093875|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152319|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152503|PCDHGA10|56106|protocadherin gamma subfamily A, 10##NM_018913|PCDHGA10|56106|protocadherin gamma subfamily A, 10##NM_032090|PCDHGA10|56106|protocadherin gamma subfamily A, 10##AF152335|PCDHGB6|56100|protocadherin gamma subfamily B, 6##AF152522|PCDHGB6|56100|protocadherin gamma subfamily B, 6##NM_018926|PCDHGB6|56100|protocadherin gamma subfamily B, 6##NM_032100|PCDHGB6|56100|protocadherin gamma subfamily B, 6##BC132769|PCDHGA9|56107|protocadherin gamma subfamily A, 9##AF152329|PCDHGA9|56107|protocadherin gamma subfamily A, 9##AF152516|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_018921|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_032089|PCDHGA9|56107|protocadherin gamma subfamily A, 9##NM_032101|PCDHGB7|56099|protocadherin gamma subfamily B, 7##NM_018927|PCDHGB7|56099|protocadherin gamma subfamily B, 7##AF152336|PCDHGB7|56099|protocadherin gamma subfamily B, 7##AF152523|PCDHGB7|56099|protocadherin gamma subfamily B, 7	0.571305	0.0	denovo_WM_7:72:0.353	denovo_WM_7:73:0.218
chr7	105698573	105698704	reg1014303.p1	4.026	+	NM_152750 AK126338 AK131293 AK304118 BC111696 BC111738 AK304352	-94940	+	TSC_hg19_v1_chr7_+_105517250 AK125261	-181374	+	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	-181653	-	X61382 CU677735 TSC_hg19_v1_chr7_-_105752712	54043	-	TSC_hg19_v1_chr7_-_105752748 BC020938 BC016835 NM_182715	54106	-	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	54377	-	NM_152750|CDHR3|222256|cadherin-related family member 3##AK126338|CDHR3|222256|cadherin-related family member 3##AK131293|CDHR3|222256|cadherin-related family member 3##AK304118|CDHR3|222256|cadherin-related family member 3##BC111696|CDHR3|222256|cadherin-related family member 3##BC111738|CDHR3|222256|cadherin-related family member 3##AK304352|CDHR3|222256|cadherin-related family member 3##AK125261|CDHR3|222256|cadherin-related family member 3##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##X61382|SYPL1|6856|synaptophysin-like 1##BC020938|SYPL1|6856|synaptophysin-like 1##BC016835|SYPL1|6856|synaptophysin-like 1##NM_182715|SYPL1|6856|synaptophysin-like 1##EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1	0.0	0.0	
chr7	134829719	134829825	reg1012733.p1	4.026	+	TSC_hg19_v1_chr7_+_134671258 AK302827 NM_178563 BC030651 AL832281 AK023045 AK311252	-158487	+	BC014035 TSC_hg19_v1_chr7_+_134576197 BC061926 BC005006 D90452 D90453	-253499	+	NM_033139 NM_033140 TSC_hg19_v1_chr7_+_134576161	-253617	+	NM_018295 TSC_hg19_v1_chr7_+_134832838 AK001862 AK225055 AK301268 BC020942	3075	+	NM_001243753 NM_001243755	24453	-	TSC_hg19_v1_chr7_-_134855252 NM_001243752	25495	-	AK302827|AGBL3|340351|ATP/GTP binding protein-like 3##NM_178563|AGBL3|340351|ATP/GTP binding protein-like 3##BC030651|AGBL3|340351|ATP/GTP binding protein-like 3##AL832281|AGBL3|340351|ATP/GTP binding protein-like 3##AK023045|AGBL3|340351|ATP/GTP binding protein-like 3##BC014035|CALD1|800|caldesmon 1##BC061926|CALD1|800|caldesmon 1##BC005006|CALD1|800|caldesmon 1##D90452|CALD1|800|caldesmon 1##D90453|CALD1|800|caldesmon 1##NM_033139|CALD1|800|caldesmon 1##NM_033140|CALD1|800|caldesmon 1##NM_018295|TMEM140|55281|transmembrane protein 140##AK001862|TMEM140|55281|transmembrane protein 140##AK225055|TMEM140|55281|transmembrane protein 140##AK301268|TMEM140|55281|transmembrane protein 140##BC020942|TMEM140|55281|transmembrane protein 140##NM_001243753|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243755|C7orf49|78996|chromosome 7 open reading frame 49##NM_001243752|C7orf49|78996|chromosome 7 open reading frame 49	1.981793	0.0	denovo_WM_7:-57:0.508	denovo_WM_7:-58:0.273	denovo_WM_7:-72:0.288	denovo_WM_7:-73:0.522
chr11	46504703	46504872	reg1010821.p2	4.025	+	BC119775 BC119817 AF385590 AF498918 NM_000741 BC095546 BC137535	-96656	-	NM_001012333 TSC_hg19_v1_chr11_+_46403310	-101481	+	TSC_hg19_v1_chr11_+_46403285 X55110	-101500	+	BC045609 NM_017749 AK302808	108155	-	AL834190 TSC_hg19_v1_chr11_-_46615568 AK057896 AK000301 AB051523	110748	-	AK304530 TSC_hg19_v1_chr11_-_46615589	110816	-	BC119775|CHRM4|1132|cholinergic receptor, muscarinic 4##BC119817|CHRM4|1132|cholinergic receptor, muscarinic 4##AF385590|CHRM4|1132|cholinergic receptor, muscarinic 4##AF498918|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_000741|CHRM4|1132|cholinergic receptor, muscarinic 4##BC095546|CHRM4|1132|cholinergic receptor, muscarinic 4##BC137535|CHRM4|1132|cholinergic receptor, muscarinic 4##NM_001012333|MDK|4192|midkine (neurite growth-promoting factor 2)##X55110|MDK|4192|midkine (neurite growth-promoting factor 2)##BC045609|AMBRA1|55626|autophagy/beclin-1 regulator 1##NM_017749|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK302808|AMBRA1|55626|autophagy/beclin-1 regulator 1##AL834190|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK057896|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK000301|AMBRA1|55626|autophagy/beclin-1 regulator 1##AB051523|AMBRA1|55626|autophagy/beclin-1 regulator 1##AK304530|AMBRA1|55626|autophagy/beclin-1 regulator 1	0.0	0.0	
chr12	90257572	90257693	reg1015777.p1	4.025	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-154087	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-154945	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-207781	-	BC026075 BC024183 BC027600 BC034491 NM_152638	1091319	-	U59111 TSC_hg19_v1_chr12_-_91398750	1141115	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	1141147	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.961862	0.0	denovo_WM_7:103:0.740
chr16	84633740	84633877	reg1013070.p1	4.025	+	BC023251 TSC_hg19_v1_chr16_-_84538263 AB046829 BC060844 AK291237 NM_020947 AK300132 AK310887	-95517	-	TSC_hg19_v1_chr16_+_84402143 AK300526 AY791884 BX648333 NM_014861 AK316128 CR749829	-231666	+	AF302109 NM_021197 AF169631 TSC_hg19_v1_chr16_+_84328440 AK075061 BC029159 DQ893365 DQ896682	-305320	+	AB590839 BT006968 EU832743 TSC_hg19_v1_chr16_-_84651627 BC010884	17768	-	TSC_hg19_v1_chr16_-_84651682 L54057 BC053682 BC010039 NM_021149 AK315675 BC016702 BC042970	17852	-	TSC_hg19_v1_chr16_+_84682127 BC033821 NM_024731 BC032400	48326	+	BC023251|KIAA1609|57707|KIAA1609##AB046829|KIAA1609|57707|KIAA1609##BC060844|KIAA1609|57707|KIAA1609##AK291237|KIAA1609|57707|KIAA1609##NM_020947|KIAA1609|57707|KIAA1609##AK300132|KIAA1609|57707|KIAA1609##AK310887|KIAA1609|57707|KIAA1609##AK300526|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AY791884|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##BX648333|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##NM_014861|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AK316128|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##CR749829|ATP2C2|9914|ATPase, Ca++ transporting, type 2C, member 2##AF302109|WFDC1|58189|WAP four-disulfide core domain 1##NM_021197|WFDC1|58189|WAP four-disulfide core domain 1##AF169631|WFDC1|58189|WAP four-disulfide core domain 1##AK075061|WFDC1|58189|WAP four-disulfide core domain 1##BC029159|WFDC1|58189|WAP four-disulfide core domain 1##DQ893365|WFDC1|58189|WAP four-disulfide core domain 1##DQ896682|WFDC1|58189|WAP four-disulfide core domain 1##BT006968|COTL1|23406|coactosin-like 1 (Dictyostelium)##EU832743|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010884|COTL1|23406|coactosin-like 1 (Dictyostelium)##L54057|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC053682|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC010039|COTL1|23406|coactosin-like 1 (Dictyostelium)##NM_021149|COTL1|23406|coactosin-like 1 (Dictyostelium)##AK315675|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC016702|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC042970|COTL1|23406|coactosin-like 1 (Dictyostelium)##BC033821|KLHL36|79786|kelch-like 36 (Drosophila)##NM_024731|KLHL36|79786|kelch-like 36 (Drosophila)##BC032400|KLHL36|79786|kelch-like 36 (Drosophila)	0.0	0.0	
chr18	31619262	31619382	reg1012929.p1	4.025	+	AB051500 TSC_hg19_v1_chr18_+_31319257	-300116	+	NM_030632 AK131454	-460763	+	BX648108 TSC_hg19_v1_chr18_-_31158297	-461093	-	AK296539 NM_001198549	9244	-	NM_001198547	183111	-	AK297185 BC000313 TSC_hg19_v1_chr18_-_31803319	183921	-	AB051500|ASXL3|80816|additional sex combs like 3 (Drosophila)##NM_030632|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK131454|ASXL3|80816|additional sex combs like 3 (Drosophila)##AK296539|NOL4|8715|nucleolar protein 4##NM_001198549|NOL4|8715|nucleolar protein 4##NM_001198547|NOL4|8715|nucleolar protein 4##AK297185|NOL4|8715|nucleolar protein 4##BC000313|NOL4|8715|nucleolar protein 4	0.0	0.0	
chr19	16560313	16560493	reg1015500.p1	4.025	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-124634	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-124762	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-251653	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	22373	-	TSC_hg19_v1_chr19_-_16582810 AK291359	22449	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	46567	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.24252	0.0	denovo_WM_7:2:0.223
chr19	2224049	2224188	reg1013670.p1	4.025	+	BC021037 TSC_hg19_v1_chr19_+_2222534	-1644	+	TSC_hg19_v1_chr19_+_2164154 AF509504 NM_032482	-59980	+	TSC_hg19_v1_chr19_-_2151551 NM_001077523 NM_003938	-72565	-	BC032803 TSC_hg19_v1_chr19_+_2232168	8003	+	CR457253 CU679203 TSC_hg19_v1_chr19_-_2236329 AK092742 AX747701 BC003084 BC008966 AK001159 NM_018049	12171	-	TSC_hg19_v1_chr19_-_2236650 AK098725	12537	-	BC021037|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##AF509504|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_032482|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##NM_001077523|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##NM_003938|AP3D1|8943|adaptor-related protein complex 3, delta 1 subunit##BC032803|DOT1L|84444|DOT1-like, histone H3 methyltransferase (S. cerevisiae)##CR457253|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK092742|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC003084|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##BC008966|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK001159|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##NM_018049|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1##AK098725|PLEKHJ1|55111|pleckstrin homology domain containing, family J member 1	0.0	0.0	
chr2	31393069	31393173	reg1012224.p1	4.025	+	BC010659 NM_001253826 NM_024572 TSC_hg19_v1_chr2_-_31361621	-31513	-	TSC_hg19_v1_chr2_-_31361366 AK024039	-31755	-	AY358758 AK225808 TSC_hg19_v1_chr2_-_31361308	-31823	-	AK296910 NM_001145122	47273	-	AK316006 NM_014600 TSC_hg19_v1_chr2_+_31456952	63800	+	AK294222 TSC_hg19_v1_chr2_+_31456985	63862	+	BC010659|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_001253826|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##NM_024572|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AY358758|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AK225808|GALNT14|79623|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14)##AK296910|CAPN14|440854|calpain 14##NM_001145122|CAPN14|440854|calpain 14##AK316006|EHD3|30845|EH-domain containing 3##NM_014600|EHD3|30845|EH-domain containing 3##AK294222|EHD3|30845|EH-domain containing 3	0.0	0.014518	
chrY	1634026	1634206	reg1010487.p1	4.025	+	BC043610 GQ280263 NM_178129 AK126147	-28078	-	AK301844 NM_001173473	-111465	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-112315	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	26413	+	NM_004043 U11090	30231	+	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	49887	+	BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase##AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase	0.0	0.0	
chr10	103442090	103442269	reg1016315.p2	4.024	+	TSC_hg19_v1_chr10_+_103348081 BC031695 BC001082 NM_015448 AK290154 AB527777 EU832466 EU832547 AY532267	-94109	+	TSC_hg19_v1_chr10_-_103348007 AK293421 AK300862 AK022476 AK293657 AK021600 NM_001174084 NM_001174085 NM_013274	-94170	-	BC003548 TSC_hg19_v1_chr10_-_103347917 BC068529 AK292225 AJ131890 AK293602	-94250	-	AK314735 TSC_hg19_v1_chr10_-_103454693 NM_022039	12535	-	TSC_hg19_v1_chr10_-_103454921 AF281859	12783	-	AB014615 U36223 U46211 U46212 U46213 U56978 BC069106 BC128235 BC128236 NM_006119 NM_033163 NM_033164 NM_033165	93528	-	BC031695|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##BC001082|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##NM_015448|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##AK290154|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##EU832466|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##EU832547|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##AY532267|DPCD|25911|deleted in primary ciliary dyskinesia homolog (mouse)##AK293421|POLL|27343|polymerase (DNA directed), lambda##AK300862|POLL|27343|polymerase (DNA directed), lambda##AK022476|POLL|27343|polymerase (DNA directed), lambda##AK293657|POLL|27343|polymerase (DNA directed), lambda##AK021600|POLL|27343|polymerase (DNA directed), lambda##NM_001174084|POLL|27343|polymerase (DNA directed), lambda##NM_001174085|POLL|27343|polymerase (DNA directed), lambda##NM_013274|POLL|27343|polymerase (DNA directed), lambda##BC003548|POLL|27343|polymerase (DNA directed), lambda##BC068529|POLL|27343|polymerase (DNA directed), lambda##AK292225|POLL|27343|polymerase (DNA directed), lambda##AJ131890|POLL|27343|polymerase (DNA directed), lambda##AK293602|POLL|27343|polymerase (DNA directed), lambda##AK314735|FBXW4|6468|F-box and WD repeat domain containing 4##NM_022039|FBXW4|6468|F-box and WD repeat domain containing 4##AF281859|FBXW4|6468|F-box and WD repeat domain containing 4##AB014615|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U36223|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U46211|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U46212|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U46213|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##U56978|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC069106|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC128235|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##BC128236|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_006119|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_033163|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_033164|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##NM_033165|FGF8|2253|fibroblast growth factor 8 (androgen-induced)	0.824839	0.0	denovo_WM_7:0:0.518	denovo_WM_7:3:0.294
chr10	73078855	73078943	reg1009978.p2	4.024	+	TSC_hg19_v1_chr10_+_72972326 AK128132 NM_001244889 NM_170744 AY358351 AB096256	-106519	+	NM_000281	-430359	-	TSC_hg19_v1_chr10_-_72648321 BC006324 L41559 AF082858	-430597	-	AX775915 AX775917 AX775919 AX775921 NM_001174098 NM_018344 TSC_hg19_v1_chr10_+_73079015 AK316152 AY358686 BC120996 BC120997 AK304503 BC050589 AK314497	126	+	BC063019 TSC_hg19_v1_chr10_+_73079044 AY288928	147	+	TSC_hg19_v1_chr10_+_73156683 BC011570 NM_001171930 NM_001171931 NM_001171932 NM_022124 NM_052836 BC032581 BC139903 BC108254 BC065284 BC136976 BC136977	77839	+	AK128132|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_001244889|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_170744|UNC5B|219699|unc-5 homolog B (C. elegans)##AY358351|UNC5B|219699|unc-5 homolog B (C. elegans)##AB096256|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_000281|PCBD1|5092|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha##BC006324|PCBD1|5092|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha##L41559|PCBD1|5092|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha##AF082858|PCBD1|5092|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha##AX775915|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775917|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775919|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775921|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_001174098|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_018344|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK316152|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY358686|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120996|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120997|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK304503|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC050589|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK314497|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC063019|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY288928|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC011570|CDH23|64072|cadherin-related 23##NM_001171930|CDH23|64072|cadherin-related 23##NM_001171931|CDH23|64072|cadherin-related 23##NM_001171932|CDH23|64072|cadherin-related 23##NM_022124|CDH23|64072|cadherin-related 23##NM_052836|CDH23|64072|cadherin-related 23##BC032581|CDH23|64072|cadherin-related 23##BC139903|CDH23|64072|cadherin-related 23##BC108254|CDH23|64072|cadherin-related 23##BC065284|CDH23|64072|cadherin-related 23##BC136976|CDH23|64072|cadherin-related 23##BC136977|CDH23|64072|cadherin-related 23	0.0	0.62591	CTCF.p2:-11:0.626
chr10	74021214	74021345	reg1012338.p2	4.024	+	TSC_hg19_v1_chr10_-_73976047 AK094170 AK023436 NM_001198799 NM_001198800	-45168	-	TSC_hg19_v1_chr10_+_73975792 NM_001242546 NM_001242547 NM_001242548 NM_173473 EU552924 BC009530	-45491	+	TSC_hg19_v1_chr10_-_73975735 BC012291 NM_015947 NM_001198798	-45515	-	NM_019058 AL136668 TSC_hg19_v1_chr10_+_74033681 AK000507 BC007714 BC015236 AY090097 BC000708 AM392607 DQ890984 DQ894159 AB587474	12545	+	CU687966 TSC_hg19_v1_chr10_-_74114678 BC064920 AK000034 AK225051	93399	-	TSC_hg19_v1_chr10_-_74114902 NM_001002762 NM_017626 AK302071	93647	-	AK094170|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##AK023436|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198799|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198800|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001242546|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242547|ANAPC16|119504|anaphase promoting complex subunit 16##NM_001242548|ANAPC16|119504|anaphase promoting complex subunit 16##NM_173473|ANAPC16|119504|anaphase promoting complex subunit 16##EU552924|ANAPC16|119504|anaphase promoting complex subunit 16##BC009530|ANAPC16|119504|anaphase promoting complex subunit 16##BC012291|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_015947|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_001198798|ASCC1|51008|activating signal cointegrator 1 complex subunit 1##NM_019058|DDIT4|54541|DNA-damage-inducible transcript 4##AL136668|DDIT4|54541|DNA-damage-inducible transcript 4##AK000507|DDIT4|54541|DNA-damage-inducible transcript 4##BC007714|DDIT4|54541|DNA-damage-inducible transcript 4##BC015236|DDIT4|54541|DNA-damage-inducible transcript 4##AY090097|DDIT4|54541|DNA-damage-inducible transcript 4##BC000708|DDIT4|54541|DNA-damage-inducible transcript 4##AM392607|DDIT4|54541|DNA-damage-inducible transcript 4##DQ890984|DDIT4|54541|DNA-damage-inducible transcript 4##DQ894159|DDIT4|54541|DNA-damage-inducible transcript 4##BC064920|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK000034|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK225051|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_001002762|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##NM_017626|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12##AK302071|DNAJB12|54788|DnaJ (Hsp40) homolog, subfamily B, member 12	0.0	0.0	
chr12	90055772	90055952	reg1009863.p2	4.024	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-6011	-	AK297677 NM_001199781 NM_001199782 NM_172240	-135824	-	CU693124 TSC_hg19_v1_chr12_-_89919778 BX647258 AK074772 AK295596 BC026080 EF011619	-136102	-	TSC_hg19_v1_chr12_+_90102640 BC040326	46825	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	47683	+	BC026075 BC024183 BC027600 BC034491 NM_152638	1293089	-	J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##AK297677|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199781|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_001199782|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##NM_172240|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BX647258|POC1B-GALNT4|100528030|POC1B-GALNT4 readthrough##AK074772|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##AK295596|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BC026080|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##EF011619|POC1B|282809|POC1 centriolar protein homolog B (Chlamydomonas)##BC040326|LOC338758|338758|uncharacterized LOC338758##BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12	0.989556	0.0	denovo_WM_7:60:0.713
chr13	67160087	67160197	reg1017451.p2	4.024	+	AK289924 NM_022843	-5170488	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-5170889	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-6188663	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	644362	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	3522399	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	5280117	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.0	0.0	
chr16	436561	436640	reg1001524.p1	4.024	+	DQ892035 DQ895226 BC021557 AB045292 TSC_hg19_v1_chr16_-_431979 NM_021259 AK091823	-4679	-	BX647501 BC013829 TSC_hg19_v1_chr16_-_420539 AK226042 AK096844 BC000507 AK315180 NM_006428	-16062	-	TSC_hg19_v1_chr16_-_402657 NM_003502 NM_181050	-33954	-	TSC_hg19_v1_chr16_+_447198 BC017067 NM_005009 BC004880 Y07604 AB528678 BT019438	10611	+	TSC_hg19_v1_chr16_+_451884 AK055839 NM_020664 BC010740 AK128012 AK225961 BC030226	15284	+	TSC_hg19_v1_chr16_+_451944 AJ293009 CU679809	15347	+	DQ892035|TMEM8A|58986|transmembrane protein 8A##DQ895226|TMEM8A|58986|transmembrane protein 8A##BC021557|TMEM8A|58986|transmembrane protein 8A##AB045292|TMEM8A|58986|transmembrane protein 8A##NM_021259|TMEM8A|58986|transmembrane protein 8A##AK091823|TMEM8A|58986|transmembrane protein 8A##BX647501|MRPL28|10573|mitochondrial ribosomal protein L28##BC013829|MRPL28|10573|mitochondrial ribosomal protein L28##AK226042|MRPL28|10573|mitochondrial ribosomal protein L28##AK096844|MRPL28|10573|mitochondrial ribosomal protein L28##BC000507|MRPL28|10573|mitochondrial ribosomal protein L28##AK315180|MRPL28|10573|mitochondrial ribosomal protein L28##NM_006428|MRPL28|10573|mitochondrial ribosomal protein L28##NM_003502|AXIN1|8312|axin 1##NM_181050|AXIN1|8312|axin 1##BC017067|NME4|4833|non-metastatic cells 4, protein expressed in##NM_005009|NME4|4833|non-metastatic cells 4, protein expressed in##BC004880|NME4|4833|non-metastatic cells 4, protein expressed in##Y07604|NME4|4833|non-metastatic cells 4, protein expressed in##BT019438|NME4|4833|non-metastatic cells 4, protein expressed in##AK055839|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##NM_020664|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC010740|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK128012|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AK225961|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##BC030226|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal##AJ293009|DECR2|26063|2,4-dienoyl CoA reductase 2, peroxisomal	0.0	0.0	
chr2	127838677	127838756	reg1013803.p1	4.024	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	-424924	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	-425009	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-3055852	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	26025	-	BC039307 NM_001001665	124626	-	AK131190 TSC_hg19_v1_chr2_-_127977781	139001	-	BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1##BC039307|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##NM_001001665|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##AK131190|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1	0.0	0.0	
chr7	30503240	30503337	reg1014843.p2	4.024	+	TSC_hg19_v1_chr7_+_30324634 AY054122	-178632	+	TSC_hg19_v1_chr7_+_30324515 AF527533	-178739	+	AF513707 NM_147128	-179366	+	AY128682 AY128683 AY128684 AY128685 AY128686 AF113925 BC040339 AK300367 AK023969 NM_006092	15033	-	CU674304 TSC_hg19_v1_chr7_-_30544445 BC013937 BC005356 AK315608 BC019243 BC000625 NM_001199815 NM_001199816 NM_001199817 NM_024051	41113	-	NM_002047	130892	+	AY054122|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AY128682|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128683|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128684|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128685|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128686|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AF113925|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC040339|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK300367|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK023969|NOD1|10392|nucleotide-binding oligomerization domain containing 1##NM_006092|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC013937|GGCT|79017|gamma-glutamylcyclotransferase##BC005356|GGCT|79017|gamma-glutamylcyclotransferase##AK315608|GGCT|79017|gamma-glutamylcyclotransferase##BC019243|GGCT|79017|gamma-glutamylcyclotransferase##BC000625|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199815|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199816|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199817|GGCT|79017|gamma-glutamylcyclotransferase##NM_024051|GGCT|79017|gamma-glutamylcyclotransferase##NM_002047|GARS|2617|glycyl-tRNA synthetase	0.998862	0.0	denovo_WM_7:41:0.836
chr8	28181916	28182031	reg1012562.p2	4.024	+	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-7248	+	NM_018091 TSC_hg19_v1_chr8_+_27950679 AK302140 AK296475 AK022626 AK295574 AK001284 AK293424 AK315985 AK316053 AK298265 BC001240 AL834273 AB463602 AM392633	-231316	+	AB075870 NM_001010906	-240586	-	BC001237 TSC_hg19_v1_chr8_-_28243694	61669	-	AK002050 AK023418 NM_018660 AB057659 AB073627	61988	-	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	165806	-	NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##NM_018091|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK302140|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK296475|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK022626|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK295574|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK001284|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK293424|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK315985|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK316053|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK298265|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##BC001240|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AL834273|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AM392633|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AB075870|C8orf80|389643|chromosome 8 open reading frame 80##NM_001010906|C8orf80|389643|chromosome 8 open reading frame 80##BC001237|ZNF395|55893|zinc finger protein 395##AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16	0.0	0.69533	CTCF.p2:34:0.695
chr14	50809772	50809905	reg1009904.p2	4.023	+	TSC_hg19_v1_chr14_+_50779043 BC011549 NM_001003803 NM_001003805 NM_015684 AF052186 U79253	-30797	+	TSC_hg19_v1_chr14_-_50778948 CU675259 AY757363 BC006117 AK309294 AK022680 AK292627 NM_024884	-30958	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	-111738	-	BC104977 NM_004196	52778	-	TSC_hg19_v1_chr14_-_50999306 BC036013 NM_006575 NM_198794 U77129	189472	-	NM_001127713	189961	+	BC011549|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003803|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003805|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_015684|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AF052186|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##U79253|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AY757363|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC006117|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK309294|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK022680|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK292627|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##NM_024884|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC104977|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##NM_004196|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##BC036013|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_006575|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_198794|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##U77129|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_001127713|ATL1|51062|atlastin GTPase 1	0.999297	0.0	
chr14	65943325	65943487	reg1013478.p2	4.023	+	TSC_hg19_v1_chr14_+_65879739 BC025385	-63681	+	TSC_hg19_v1_chr14_+_65879525 Y17978 Y17979	-63918	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	-64080	-	AB037806 AF272663 NM_001024218 NM_020806	1030718	+	TSC_hg19_v1_chr14_+_66974859 AK025169	1031447	+	TSC_hg19_v1_chr14_+_66974870 AK315569	1031463	+	BC025385|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17978|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17979|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431##AB037806|GPHN|10243|gephyrin##AF272663|GPHN|10243|gephyrin##NM_001024218|GPHN|10243|gephyrin##NM_020806|GPHN|10243|gephyrin##AK025169|GPHN|10243|gephyrin##AK315569|GPHN|10243|gephyrin	1.988588	0.0	denovo_WM_7:-23:0.332	denovo_WM_7:-24:0.266	denovo_WM_7:-41:0.264	denovo_WM_7:-42:0.330
chr14	75605421	75605536	reg1012794.p1	4.023	+	AK023615 TSC_hg19_v1_chr14_-_75600130	-5358	-	TSC_hg19_v1_chr14_-_75593752 AB082526 AK128693 NM_033116	-11726	-	AY048580 AB463142 AY080896 TSC_hg19_v1_chr14_-_75593718 BC093881 BC112101	-11808	-	TSC_hg19_v1_chr14_-_75643301 AL832012 AJ004913 X97442 L40397 AK222972 AK310371 BX248754	37816	-	TSC_hg19_v1_chr14_-_75643322 AK296800 AK312384	37842	-	BC001496 BC001825 TSC_hg19_v1_chr14_-_75643334	37855	-	AK023615|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AB082526|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AK128693|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##NM_033116|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AY048580|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AY080896|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC093881|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##BC112101|NEK9|91754|NIMA (never in mitosis gene a)- related kinase 9##AL832012|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AJ004913|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##X97442|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##L40397|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK222972|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK310371|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BX248754|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK296800|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##AK312384|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001496|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)##BC001825|TMED10|10972|transmembrane emp24-like trafficking protein 10 (yeast)	1.091479	0.0	
chr16	25050034	25050214	reg1005262.p1	4.023	+	TSC_hg19_v1_chr16_-_25026691 AK027567 AK291691 BC080195 AK301500 NM_001006634 NM_018054	-23432	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	-23512	-	AK125358 TSC_hg19_v1_chr16_-_24968918	-81232	-	TSC_hg19_v1_chr16_+_25078227 BC023651 AK093382	28165	+	TSC_hg19_v1_chr16_+_25123062 NM_001032391 NM_016309 AK223364 AF151826 BC001214	72937	+	TSC_hg19_v1_chr16_+_25123102 AK025884 AK225271 AK291885 AK314409 BC014217 AF037601 CU674610 AL137283 CU676933	73073	+	AK027567|ARHGAP17|55114|Rho GTPase activating protein 17##AK291691|ARHGAP17|55114|Rho GTPase activating protein 17##BC080195|ARHGAP17|55114|Rho GTPase activating protein 17##AK301500|ARHGAP17|55114|Rho GTPase activating protein 17##NM_001006634|ARHGAP17|55114|Rho GTPase activating protein 17##NM_018054|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##BC023651|LOC283887|283887|uncharacterized LOC283887##AK093382|LOC283887|283887|uncharacterized LOC283887##NM_001032391|LCMT1|51451|leucine carboxyl methyltransferase 1##NM_016309|LCMT1|51451|leucine carboxyl methyltransferase 1##AK223364|LCMT1|51451|leucine carboxyl methyltransferase 1##AF151826|LCMT1|51451|leucine carboxyl methyltransferase 1##BC001214|LCMT1|51451|leucine carboxyl methyltransferase 1##AK025884|LCMT1|51451|leucine carboxyl methyltransferase 1##AK225271|LCMT1|51451|leucine carboxyl methyltransferase 1##AK291885|LCMT1|51451|leucine carboxyl methyltransferase 1##AK314409|LCMT1|51451|leucine carboxyl methyltransferase 1##BC014217|LCMT1|51451|leucine carboxyl methyltransferase 1##AF037601|LCMT1|51451|leucine carboxyl methyltransferase 1##AL137283|LCMT1|51451|leucine carboxyl methyltransferase 1	0.0	0.0	
chr2	109225629	109225712	reg1008906.p2	4.023	+	TSC_hg19_v1_chr2_+_109223602 AF527762 NM_001193482	-2053	+	TSC_hg19_v1_chr2_+_109204921 BC005341 NM_001193488	-20701	+	TSC_hg19_v1_chr2_+_109204792 AF527763	-20885	+	TSC_hg19_v1_chr2_+_109237706 AK304260 NM_001193484 AF527760 AK310547	12033	+	AF527759 NM_001193485	45597	+	TSC_hg19_v1_chr2_+_109271492 AK302411 AK312178	45818	+	AF527762|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193482|LIMS1|3987|LIM and senescent cell antigen-like domains 1##BC005341|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193488|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527763|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK304260|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193484|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527760|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK310547|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AF527759|LIMS1|3987|LIM and senescent cell antigen-like domains 1##NM_001193485|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK302411|LIMS1|3987|LIM and senescent cell antigen-like domains 1##AK312178|LIMS3|96626|LIM and senescent cell antigen-like domains 3	0.042812	0.0	
chr3	195681710	195681890	reg1009118.p1	4.023	+	NM_005781 L13738	-45884	-	AK131539 NM_001010938	-59369	-	BC008884 AK225786 BC020389 TSC_hg19_v1_chr3_-_195619679	-62235	-	TSC_hg19_v1_chr3_-_195717156 BC071730 AK300421 AK316025 AK299148	35331	-	TSC_hg19_v1_chr3_-_195808954 AB209254 X01060 BC001188	127144	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	127161	-	NM_005781|TNK2|10188|tyrosine kinase, non-receptor, 2##L13738|TNK2|10188|tyrosine kinase, non-receptor, 2##AK131539|TNK2|10188|tyrosine kinase, non-receptor, 2##NM_001010938|TNK2|10188|tyrosine kinase, non-receptor, 2##BC008884|TNK2|10188|tyrosine kinase, non-receptor, 2##AK225786|TNK2|10188|tyrosine kinase, non-receptor, 2##BC020389|TNK2|10188|tyrosine kinase, non-receptor, 2##BC071730|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##AK316025|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##AK299148|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##AB209254|TFRC|7037|transferrin receptor (p90, CD71)##X01060|TFRC|7037|transferrin receptor (p90, CD71)##BC001188|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)	0.0	0.0	
chr5	159671430	159671498	reg1001861.p1	4.023	+	NM_001445 X90908 U19869 CU692652	-14965	+	NM_001040442 AB528665	-45384	+	DQ132786 NM_001130958	-57091	+	AK294000 TSC_hg19_v1_chr5_-_159739572 BC035871 NM_024565 AK302823	68080	-	TSC_hg19_v1_chr5_-_159797619 BC054506 BC011699 AF329836 AB590457 AY358839 NM_031908	126168	-	BC032603 TSC_hg19_v1_chr5_-_159827053 NM_022090	155619	-	NM_001445|FABP6|2172|fatty acid binding protein 6, ileal##X90908|FABP6|2172|fatty acid binding protein 6, ileal##U19869|FABP6|2172|fatty acid binding protein 6, ileal##NM_001040442|FABP6|2172|fatty acid binding protein 6, ileal##DQ132786|FABP6|2172|fatty acid binding protein 6, ileal##NM_001130958|FABP6|2172|fatty acid binding protein 6, ileal##AK294000|CCNJL|79616|cyclin J-like##BC035871|CCNJL|79616|cyclin J-like##NM_024565|CCNJL|79616|cyclin J-like##AK302823|CCNJL|79616|cyclin J-like##BC054506|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC011699|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AF329836|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##AY358839|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##NM_031908|C1QTNF2|114898|C1q and tumor necrosis factor related protein 2##BC032603|C5orf54|63920|chromosome 5 open reading frame 54##NM_022090|C5orf54|63920|chromosome 5 open reading frame 54	0.0	0.0	
chr11	88168936	88169072	reg1011763.p2	4.022	+	TSC_hg19_v1_chr11_-_88070905 BX537913 NM_001114173 NM_001814 NM_148170	-98073	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	-98102	-	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	-98137	-	AY608336 D28538 D28539 NM_001143831	612135	-	AK291362 NM_000842	627811	-	NM_000372 BC027179 M74314 Y00819 U01873 J03581	742076	+	BX537913|CTSC|1075|cathepsin C##NM_001114173|CTSC|1075|cathepsin C##NM_001814|CTSC|1075|cathepsin C##NM_148170|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AY608336|GRM5|2915|glutamate receptor, metabotropic 5##D28538|GRM5|2915|glutamate receptor, metabotropic 5##D28539|GRM5|2915|glutamate receptor, metabotropic 5##NM_001143831|GRM5|2915|glutamate receptor, metabotropic 5##AK291362|GRM5|2915|glutamate receptor, metabotropic 5##NM_000842|GRM5|2915|glutamate receptor, metabotropic 5##NM_000372|TYR|7299|tyrosinase (oculocutaneous albinism IA)##BC027179|TYR|7299|tyrosinase (oculocutaneous albinism IA)##M74314|TYR|7299|tyrosinase (oculocutaneous albinism IA)##Y00819|TYR|7299|tyrosinase (oculocutaneous albinism IA)##U01873|TYR|7299|tyrosinase (oculocutaneous albinism IA)##J03581|TYR|7299|tyrosinase (oculocutaneous albinism IA)	0.999933	0.0	
chr13	98122323	98122435	reg1010547.p2	4.022	+	TSC_hg19_v1_chr13_+_98086683 AF205602 BC070031 EU832309 EU832393 X12534 AB464128 AF493914	-35677	+	TSC_hg19_v1_chr13_+_98086350 AK315139 NM_021033 BC041333	-35942	+	TSC_hg19_v1_chr13_+_97999294 AF339832	-123085	+	NM_002271 BC045640	483558	+	TSC_hg19_v1_chr13_+_98628928 BX648222 AK303494 AK225286 BC001497 BC019309 DQ893033 EU176755 U72761	506453	+	TSC_hg19_v1_chr13_+_98795412 NM_001001715 NM_005766	673042	+	AF205602|RAP2A|5911|RAP2A, member of RAS oncogene family##BC070031|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832309|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832393|RAP2A|5911|RAP2A, member of RAS oncogene family##X12534|RAP2A|5911|RAP2A, member of RAS oncogene family##AF493914|RAP2A|5911|RAP2A, member of RAS oncogene family##AK315139|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_021033|RAP2A|5911|RAP2A, member of RAS oncogene family##BC041333|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_002271|IPO5|3843|importin 5##BC045640|IPO5|3843|importin 5##BX648222|IPO5|3843|importin 5##AK303494|IPO5|3843|importin 5##AK225286|IPO5|3843|importin 5##BC001497|IPO5|3843|importin 5##BC019309|IPO5|3843|importin 5##DQ893033|IPO5|3843|importin 5##EU176755|IPO5|3843|importin 5##U72761|IPO5|3843|importin 5##NM_001001715|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##NM_005766|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	0.999734	0.0	denovo_WM_7:-42:0.230	denovo_WM_7:-43:0.230	denovo_WM_7:-44:0.230	denovo_WM_7:-45:0.230
chr16	5210222	5210402	reg1014338.p1	4.022	+	CU679605 BC010084 TSC_hg19_v1_chr16_-_5147756 AY037162 NM_201400 NM_201598	-62544	-	NM_019109 TSC_hg19_v1_chr16_+_5121825 AK075373 BC031095 AB019038 BC004402 AK311475 CU678708 DQ895010 EU176309	-88482	+	TSC_hg19_v1_chr16_-_5116030 BC033681 AY358483 NM_001098514 NM_152459	-94225	-	AB208826 AF107203 AF448859 NM_001142333 NM_018723 AL713700 TSC_hg19_v1_chr16_+_6069353	858913	+	TSC_hg19_v1_chr16_+_6533765 BC033885	1323463	+	AK001027 NM_001142334	1613497	+	BC010084|FAM86A|196483|family with sequence similarity 86, member A##AY037162|FAM86A|196483|family with sequence similarity 86, member A##NM_201400|FAM86A|196483|family with sequence similarity 86, member A##NM_201598|FAM86A|196483|family with sequence similarity 86, member A##NM_019109|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##AK075373|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##BC031095|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##AB019038|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##BC004402|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##AK311475|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##DQ895010|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##EU176309|ALG1|56052|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)##BC033681|C16orf89|146556|chromosome 16 open reading frame 89##AY358483|C16orf89|146556|chromosome 16 open reading frame 89##NM_001098514|C16orf89|146556|chromosome 16 open reading frame 89##NM_152459|C16orf89|146556|chromosome 16 open reading frame 89##AB208826|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF107203|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF448859|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142333|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_018723|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AL713700|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1	0.090033	0.0	
chr18	24331768	24331937	reg1002511.p1	4.022	+	AF542549 NM_198991	-111545	-	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	-202611	-	NM_001142730 TSC_hg19_v1_chr18_-_24128518	-203342	-	U63623 NM_004028	110702	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	113864	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	391027	-	AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1##AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##U63623|AQP4|361|aquaporin 4##NM_004028|AQP4|361|aquaporin 4##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	0.0	0.0	
chr19	57790597	57790668	reg1011635.p1	4.022	+	TSC_hg19_v1_chr19_+_57752051 NM_001023563 NM_001145078	-38575	+	AK297977 TSC_hg19_v1_chr19_+_57751999	-38644	+	AY661554 NM_001015879 NM_003160 AK301886 NM_001015878 AF054621	-48229	+	TSC_hg19_v1_chr19_+_57791351 AK298106	724	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	1255	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	41282	+	NM_001023563|ZNF805|390980|zinc finger protein 805##NM_001145078|ZNF805|390980|zinc finger protein 805##AK297977|ZNF805|390980|zinc finger protein 805##AY661554|AURKC|6795|aurora kinase C##NM_001015879|AURKC|6795|aurora kinase C##NM_003160|AURKC|6795|aurora kinase C##NM_001015878|AURKC|6795|aurora kinase C##AF054621|AURKC|6795|aurora kinase C##AK298106|ZNF460|10794|zinc finger protein 460##AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543	0.997508	0.0	
chr3	31068963	31069080	reg1013503.p2	4.022	+	AL832766 NM_207359	-132869	-	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-420618	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-420999	+	TSC_hg19_v1_chr3_+_31574119 AK311488	505109	+	TSC_hg19_v1_chr3_+_31574468 AK074587	505428	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	505461	+	AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	0.913768	0.027423	denovo_WM_7:30:0.840
chr4	79557501	79557644	reg1011649.p2	4.022	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	-84664	+	NM_005139 TSC_hg19_v1_chr4_+_79472790	-84802	+	BC006366 TSC_hg19_v1_chr4_-_79103287	-454287	-	TSC_hg19_v1_chr4_+_79697501 AL137661	139911	+	NM_017593 NM_198892 TSC_hg19_v1_chr4_+_79697532	139964	+	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	140051	+	BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3##NM_005139|ANXA3|306|annexin A3##AL137661|BMP2K|55589|BMP2 inducible kinase##NM_017593|BMP2K|55589|BMP2 inducible kinase##NM_198892|BMP2K|55589|BMP2 inducible kinase##AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase	0.996877	0.0	
chr4	89242362	89242478	reg1014513.p2	4.022	+	AY435431 NM_152542 TSC_hg19_v1_chr4_-_89205908 AL834167	-36517	-	TSC_hg19_v1_chr4_-_89205714 AL834271 AK314417 AK054678 AY157615 AY994097 AF351614 BC020850 BC037552	-36693	-	BC021281 NM_004827 AF151530	-162383	-	TSC_hg19_v1_chr4_+_89299890 AF336798 AY653201 AY653202 AY653203 NM_001165136 NM_017912	57462	+	AK295832 TSC_hg19_v1_chr4_+_89300006 BC042047	57577	+	TSC_hg19_v1_chr4_+_89300147 AK092403 AX747525 BX647121	57746	+	AY435431|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##NM_152542|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AL834167|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AL834271|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AK314417|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AK054678|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY157615|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AY994097|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##AF351614|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC020850|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC037552|PPM1K|152926|protein phosphatase, Mg2+/Mn2+ dependent, 1K##BC021281|ABCG2|9429|ATP-binding cassette, sub-family G (WHITE), member 2##NM_004827|ABCG2|9429|ATP-binding cassette, sub-family G (WHITE), member 2##AF336798|HERC6|55008|hect domain and RLD 6##AY653201|HERC6|55008|hect domain and RLD 6##AY653202|HERC6|55008|hect domain and RLD 6##AY653203|HERC6|55008|hect domain and RLD 6##NM_001165136|HERC6|55008|hect domain and RLD 6##NM_017912|HERC6|55008|hect domain and RLD 6##AK295832|HERC6|55008|hect domain and RLD 6##BC042047|HERC6|55008|hect domain and RLD 6##AK092403|HERC6|55008|hect domain and RLD 6##BX647121|HERC6|55008|hect domain and RLD 6	0.982588	0.0	denovo_WM_7:35:0.840
chr9	3524755	3524863	reg1006365.p2	4.022	+	AK127804 TSC_hg19_v1_chr9_-_3223066	-301773	-	TSC_hg19_v1_chr9_-_2844102 AK315531 NM_014878	-680696	-	TSC_hg19_v1_chr9_-_2844084 AL832245 AK225953 AL832239	-680720	-	TSC_hg19_v1_chr9_-_3525889 AK310956 AK289540	1030	-	TSC_hg19_v1_chr9_-_3525983 BC022191 NM_002919 NM_134428	1195	-	TSC_hg19_v1_chr9_+_3526079 AK125504	1279	+	AK315531|KIAA0020|9933|KIAA0020##NM_014878|KIAA0020|9933|KIAA0020##AL832245|KIAA0020|9933|KIAA0020##AK225953|KIAA0020|9933|KIAA0020##AL832239|KIAA0020|9933|KIAA0020##AK310956|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##AK289540|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##BC022191|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_002919|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_134428|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)	0.518611	0.0	denovo_WM_7:102:0.485
chr1	33177863	33178010	reg1012963.p1	4.021	+	AK297958 TSC_hg19_v1_chr1_-_33168379 NM_001161708 NM_030786	-9569	-	AB590598 AK302275 TSC_hg19_v1_chr1_-_33168346	-9630	-	NM_001135255 NM_005610 TSC_hg19_v1_chr1_+_33116808 AK312571 AK299410 BC003092 X74262 X71810 BC053904 AK222779 BC075836 AB527301 DQ892499 DQ895712 CU678370 BT007309 AK299251 NM_001135256	-61083	+	TSC_hg19_v1_chr1_+_33207423 NM_020888	29631	+	TSC_hg19_v1_chr1_+_33219620 AB384615	41679	+	TSC_hg19_v1_chr1_+_33231234 AK298965 NM_001198972 NM_001198973	53295	+	AK297958|SYNC|81493|syncoilin, intermediate filament protein##NM_001161708|SYNC|81493|syncoilin, intermediate filament protein##NM_030786|SYNC|81493|syncoilin, intermediate filament protein##AK302275|SYNC|81493|syncoilin, intermediate filament protein##NM_001135255|RBBP4|5928|retinoblastoma binding protein 4##NM_005610|RBBP4|5928|retinoblastoma binding protein 4##AK312571|RBBP4|5928|retinoblastoma binding protein 4##AK299410|RBBP4|5928|retinoblastoma binding protein 4##BC003092|RBBP4|5928|retinoblastoma binding protein 4##X74262|RBBP4|5928|retinoblastoma binding protein 4##X71810|RBBP4|5928|retinoblastoma binding protein 4##BC053904|RBBP4|5928|retinoblastoma binding protein 4##AK222779|RBBP4|5928|retinoblastoma binding protein 4##BC075836|RBBP4|5928|retinoblastoma binding protein 4##DQ892499|RBBP4|5928|retinoblastoma binding protein 4##DQ895712|RBBP4|5928|retinoblastoma binding protein 4##BT007309|RBBP4|5928|retinoblastoma binding protein 4##AK299251|RBBP4|5928|retinoblastoma binding protein 4##NM_001135256|RBBP4|5928|retinoblastoma binding protein 4##NM_020888|KIAA1522|57648|KIAA1522##AK298965|KIAA1522|57648|KIAA1522##NM_001198972|KIAA1522|57648|KIAA1522##NM_001198973|KIAA1522|57648|KIAA1522	0.0	0.989463	CTCF.p2:2:0.989
chr1	33419366	33419482	reg1014849.p2	4.021	+	AY359883 TSC_hg19_v1_chr1_-_33366959 AY027543 BC020497 BC001418 BC013953 NM_033504 BC023260	-52490	-	TSC_hg19_v1_chr1_+_33352097 DQ426877 AK313907 BC001777 NM_002143	-67340	+	BC062297 NM_001171941	-81343	-	NM_001127361 NM_153341 TSC_hg19_v1_chr1_-_33430415 AK131439	10972	-	AB451267 AB451394 AY080900 U54645 BC009405 AK307731 TSC_hg19_v1_chr1_-_33502450 AK295105 AK296863 BC026705 AK291676 AK297036	83015	-	TSC_hg19_v1_chr1_-_33502463 BC070127 BC090040 U84371 U39945 AY080899	83033	-	AY359883|TMEM54|113452|transmembrane protein 54##AY027543|TMEM54|113452|transmembrane protein 54##BC020497|TMEM54|113452|transmembrane protein 54##BC001418|TMEM54|113452|transmembrane protein 54##BC013953|TMEM54|113452|transmembrane protein 54##NM_033504|TMEM54|113452|transmembrane protein 54##BC023260|TMEM54|113452|transmembrane protein 54##DQ426877|HPCA|3208|hippocalcin##AK313907|HPCA|3208|hippocalcin##BC001777|HPCA|3208|hippocalcin##NM_002143|HPCA|3208|hippocalcin##BC062297|FNDC5|252995|fibronectin type III domain containing 5##NM_001171941|FNDC5|252995|fibronectin type III domain containing 5##NM_001127361|RNF19B|127544|ring finger protein 19B##NM_153341|RNF19B|127544|ring finger protein 19B##AK131439|RNF19B|127544|ring finger protein 19B##AB451267|AK2|204|adenylate kinase 2##AB451394|AK2|204|adenylate kinase 2##AY080900|AK2|204|adenylate kinase 2##U54645|AK2|204|adenylate kinase 2##BC009405|AK2|204|adenylate kinase 2##AK307731|AK2|204|adenylate kinase 2##AK295105|AK2|204|adenylate kinase 2##AK296863|AK2|204|adenylate kinase 2##BC026705|AK2|204|adenylate kinase 2##AK291676|AK2|204|adenylate kinase 2##AK297036|AK2|204|adenylate kinase 2##BC070127|AK2|204|adenylate kinase 2##BC090040|AK2|204|adenylate kinase 2##U84371|AK2|204|adenylate kinase 2##U39945|AK2|204|adenylate kinase 2##AY080899|AK2|204|adenylate kinase 2	0.994299	0.0	
chr17	26990877	26991003	reg1006564.p2	4.021	+	TSC_hg19_v1_chr17_+_26989239 BC150268 D79984 NM_003170 BC136522 BC136524	-1673	+	TSC_hg19_v1_chr17_+_26989222 AL833607	-1731	+	TSC_hg19_v1_chr17_-_26989199 NM_006923	-1744	-	BC029574 NM_152465	47931	-	TSC_hg19_v1_chr17_-_27044728 BC016841 AK074689 NM_001144942 NM_031934	53877	-	AF327350 AK297850 AK027312 AJ277106 AK304633 BC066904 NM_001142624 NM_001142625 NM_001144943	54288	-	BC150268|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##D79984|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##NM_003170|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##BC136522|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##BC136524|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##AL833607|SUPT6H|6830|suppressor of Ty 6 homolog (S. cerevisiae)##NM_006923|SDF2|6388|stromal cell-derived factor 2##BC029574|PROCA1|147011|protein interacting with cyclin A1##NM_152465|PROCA1|147011|protein interacting with cyclin A1##BC016841|RAB34|83871|RAB34, member RAS oncogene family##AK074689|RAB34|83871|RAB34, member RAS oncogene family##NM_001144942|RAB34|83871|RAB34, member RAS oncogene family##NM_031934|RAB34|83871|RAB34, member RAS oncogene family##AF327350|RAB34|83871|RAB34, member RAS oncogene family##AK297850|RAB34|83871|RAB34, member RAS oncogene family##AK027312|RAB34|83871|RAB34, member RAS oncogene family##AJ277106|RAB34|83871|RAB34, member RAS oncogene family##AK304633|RAB34|83871|RAB34, member RAS oncogene family##BC066904|RAB34|83871|RAB34, member RAS oncogene family##NM_001142624|RAB34|83871|RAB34, member RAS oncogene family##NM_001142625|RAB34|83871|RAB34, member RAS oncogene family##NM_001144943|RAB34|83871|RAB34, member RAS oncogene family	0.991053	0.0	
chr22	40592964	40593030	reg1015232.p2	4.021	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-18998	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-151565	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	-152088	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	149535	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	173592	+	TSC_hg19_v1_chr22_+_40766619 AK295469	173622	+	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3	0.0	0.0	
chr3	10262673	10262823	reg1009461.p2	4.021	+	NM_001570 BC125184 AK299033 AK312841 TSC_hg19_v1_chr3_+_10206602 AF026273 AB587544 AJ496794	-56148	+	TSC_hg19_v1_chr3_+_10183517 AB528056	-79210	+	AK304002 TSC_hg19_v1_chr3_+_10183487	-79250	+	TSC_hg19_v1_chr3_+_10290182 NM_014760	27427	+	TSC_hg19_v1_chr3_+_10290210 D86972	27514	+	TSC_hg19_v1_chr3_+_10290370 AK289794 BC090935 BC101776 BC101770	27774	+	NM_001570|IRAK2|3656|interleukin-1 receptor-associated kinase 2##BC125184|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK299033|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK312841|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AF026273|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AJ496794|IRAK2|3656|interleukin-1 receptor-associated kinase 2##AK304002|VHL|7428|von Hippel-Lindau tumor suppressor##NM_014760|TATDN2|9797|TatD DNase domain containing 2##D86972|TATDN2|9797|TatD DNase domain containing 2##AK289794|TATDN2|9797|TatD DNase domain containing 2##BC090935|TATDN2|9797|TatD DNase domain containing 2##BC101776|TATDN2|9797|TatD DNase domain containing 2##BC101770|TATDN2|9797|TatD DNase domain containing 2	0.0	0.0	
chr5	137364657	137364809	reg1005317.p2	4.021	+	NM_014386 BC044581 AK301924 BC038714 AF182034 AF118125 CU692208	-139582	+	AF133820 AK300076 AK307620 AK312733 BC005376 TSC_hg19_v1_chr5_+_137203565 AF144477	-161167	+	NM_001135940 NM_006790 AK300088 TSC_hg19_v1_chr5_+_137203548	-161187	+	TSC_hg19_v1_chr5_-_137368717 AF251038	3969	-	TSC_hg19_v1_chr5_-_137368770 BC041335 BC048965	4038	-	TSC_hg19_v1_chr5_-_137368776 AK314224	4043	-	NM_014386|PKD2L2|27039|polycystic kidney disease 2-like 2##BC044581|PKD2L2|27039|polycystic kidney disease 2-like 2##AK301924|PKD2L2|27039|polycystic kidney disease 2-like 2##BC038714|PKD2L2|27039|polycystic kidney disease 2-like 2##AF182034|PKD2L2|27039|polycystic kidney disease 2-like 2##AF118125|PKD2L2|27039|polycystic kidney disease 2-like 2##AF133820|MYOT|9499|myotilin##AK300076|MYOT|9499|myotilin##AK307620|MYOT|9499|myotilin##AK312733|MYOT|9499|myotilin##BC005376|MYOT|9499|myotilin##AF144477|MYOT|9499|myotilin##NM_001135940|MYOT|9499|myotilin##NM_006790|MYOT|9499|myotilin##AK300088|MYOT|9499|myotilin##AF251038|FAM13B|51306|family with sequence similarity 13, member B##BC041335|FAM13B|51306|family with sequence similarity 13, member B##BC048965|FAM13B|51306|family with sequence similarity 13, member B##AK314224|FAM13B|51306|family with sequence similarity 13, member B	0.996776	0.0	denovo_WM_7:-11:0.649
chr6	10536519	10536631	reg1011463.p1	4.021	+	AK307373 NM_145649 AK291767 AK310216 AL832714	-14967	+	AK296737 NM_001042425	-116784	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	-121107	-	NM_001491	19373	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	49439	+	BC016820 NM_001145020	158262	-	AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK296737|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001042425|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52	0.995586	0.0	denovo_WM_7:24:0.422	denovo_WM_7:26:0.456
chr10	54774643	54774709	reg1017532.p2	4.020	+	AY826184 AB527950 AF360991 BC096179 BC096180 BC096181 BC096182 BC069338 NM_000242 X15422	-243250	-	TSC_hg19_v1_chr10_+_54074042 NM_012242 AK314902 BC001539 AY359005 AF127563 AF177394 AB528499 CU674754 DQ892222 DQ895421	-700561	+	CU688440 TSC_hg19_v1_chr10_-_53459366 AY130299 BC028239 AK222574 AL136747 AK314318 NM_015235	-1315329	-	AL834134 AY029205 AY029237 EU718480 EU718481 EU718482 NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_033056	1786322	-	NM_001190478 TSC_hg19_v1_chr10_+_57358800	2584098	+	TSC_hg19_v1_chr10_-_58121017 AF067656 AK225509	3346338	-	AY826184|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##AF360991|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096179|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096180|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096181|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC096182|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##BC069338|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##NM_000242|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##X15422|MBL2|4153|mannose-binding lectin (protein C) 2, soluble##NM_012242|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AK314902|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##BC001539|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AY359005|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AF127563|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AF177394|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##DQ892222|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##DQ895421|DKK1|22943|dickkopf 1 homolog (Xenopus laevis)##AY130299|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##BC028239|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AK222574|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AL136747|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AK314318|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##NM_015235|CSTF2T|23283|cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant##AL834134|PCDH15|65217|protocadherin-related 15##AY029205|PCDH15|65217|protocadherin-related 15##AY029237|PCDH15|65217|protocadherin-related 15##EU718480|PCDH15|65217|protocadherin-related 15##EU718481|PCDH15|65217|protocadherin-related 15##EU718482|PCDH15|65217|protocadherin-related 15##NM_001142763|PCDH15|65217|protocadherin-related 15##NM_001142764|PCDH15|65217|protocadherin-related 15##NM_001142765|PCDH15|65217|protocadherin-related 15##NM_001142766|PCDH15|65217|protocadherin-related 15##NM_001142767|PCDH15|65217|protocadherin-related 15##NM_001142768|PCDH15|65217|protocadherin-related 15##NM_001142769|PCDH15|65217|protocadherin-related 15##NM_001142770|PCDH15|65217|protocadherin-related 15##NM_001142771|PCDH15|65217|protocadherin-related 15##NM_001142772|PCDH15|65217|protocadherin-related 15##NM_001142773|PCDH15|65217|protocadherin-related 15##NM_033056|PCDH15|65217|protocadherin-related 15##NM_001190478|MTRNR2L5|100463289|MT-RNR2-like 5##AF067656|ZWINT|11130|ZW10 interactor##AK225509|ZWINT|11130|ZW10 interactor	1.955223	0.0	denovo_WM_7:-68:0.456	denovo_WM_7:-69:0.455	denovo_WM_7:-89:0.445	denovo_WM_7:-97:0.286
chr10	75987983	75988059	reg1013216.p2	4.020	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-51434	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-51491	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-51539	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	598333	+	AY686755 NM_001003892 BC137321 BC137322	830284	-	AB027004 AB103375 NM_016364	871226	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.0	0.0	
chr11	111245992	111246117	reg1014517.p1	4.020	+	TSC_hg19_v1_chr11_+_111170033 AK292195 NM_001136105	-76021	+	BC039669 NM_198498	-119348	+	TSC_hg19_v1_chr11_-_110583161 AK307602 AY496263 AY496264 NM_020809	-662769	-	CU689418 DQ890869 EU176491 AB464058 X83504 BC032549 Z47550 AK313573 TSC_hg19_v1_chr11_-_111250000	3898	-	NM_006235	4102	-	BC031045 NM_017589	137016	-	AK292195|C11orf93|120376|chromosome 11 open reading frame 93##NM_001136105|C11orf93|120376|chromosome 11 open reading frame 93##BC039669|C11orf53|341032|chromosome 11 open reading frame 53##NM_198498|C11orf53|341032|chromosome 11 open reading frame 53##AK307602|ARHGAP20|57569|Rho GTPase activating protein 20##AY496263|ARHGAP20|57569|Rho GTPase activating protein 20##AY496264|ARHGAP20|57569|Rho GTPase activating protein 20##NM_020809|ARHGAP20|57569|Rho GTPase activating protein 20##DQ890869|POU2AF1|5450|POU class 2 associating factor 1##EU176491|POU2AF1|5450|POU class 2 associating factor 1##X83504|POU2AF1|5450|POU class 2 associating factor 1##BC032549|POU2AF1|5450|POU class 2 associating factor 1##Z47550|POU2AF1|5450|POU class 2 associating factor 1##AK313573|POU2AF1|5450|POU class 2 associating factor 1##NM_006235|POU2AF1|5450|POU class 2 associating factor 1##BC031045|BTG4|54766|B-cell translocation gene 4##NM_017589|BTG4|54766|B-cell translocation gene 4	0.996167	0.0	
chr1	97191661	97191763	reg1014059.p2	4.020	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-4428	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-46516	-	AK292699 NM_001128142 NM_001199682 NM_015485 TSC_hg19_v1_chr1_+_95699765 AK292665 AK296476 AL050062 BC125142 BC065813 BC010936 BC016307 AB528227 AM392773 AM393257 CR533493	-1491964	+	BC030757 TSC_hg19_v1_chr1_+_97260652	68871	+	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	1194777	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	1194847	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AK292699|RWDD3|25950|RWD domain containing 3##NM_001128142|RWDD3|25950|RWD domain containing 3##NM_001199682|RWDD3|25950|RWD domain containing 3##NM_015485|RWDD3|25950|RWD domain containing 3##AK292665|RWDD3|25950|RWD domain containing 3##AK296476|RWDD3|25950|RWD domain containing 3##AL050062|RWDD3|25950|RWD domain containing 3##BC125142|RWDD3|25950|RWD domain containing 3##BC065813|RWDD3|25950|RWD domain containing 3##BC010936|RWDD3|25950|RWD domain containing 3##BC016307|RWDD3|25950|RWD domain containing 3##AM392773|RWDD3|25950|RWD domain containing 3##AM393257|RWDD3|25950|RWD domain containing 3##CR533493|RWDD3|25950|RWD domain containing 3##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase	1.993072	0.0	denovo_WM_7:-51:0.221	denovo_WM_7:-73:0.221
chr3	11760021	11760137	reg1010936.p1	4.020	+	TSC_hg19_v1_chr3_-_11685397 NM_001128219	-74683	-	AK307708 TSC_hg19_v1_chr3_-_11623831 NM_001128220	-136246	-	TSC_hg19_v1_chr3_-_11610264 AK308761 NM_001128221	-149749	-	TSC_hg19_v1_chr3_-_11762012 D50911 BC001514 AK130542 BC000763 BC003038 NM_014667	2036	-	EU832515 EU832596 AK295839 TSC_hg19_v1_chr3_-_11888358 AK310993 BC015088 NM_138807 AK092776 AX747723 AK309733 AK303598	128180	-	TSC_hg19_v1_chr3_+_12045861 NM_003178 NM_133625 AK094464 BC051307 AB209088 U40215 AF077671 AF077737	285824	+	NM_001128219|VGLL4|9686|vestigial like 4 (Drosophila)##AK307708|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128220|VGLL4|9686|vestigial like 4 (Drosophila)##AK308761|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128221|VGLL4|9686|vestigial like 4 (Drosophila)##D50911|VGLL4|9686|vestigial like 4 (Drosophila)##BC001514|VGLL4|9686|vestigial like 4 (Drosophila)##AK130542|VGLL4|9686|vestigial like 4 (Drosophila)##BC000763|VGLL4|9686|vestigial like 4 (Drosophila)##BC003038|VGLL4|9686|vestigial like 4 (Drosophila)##NM_014667|VGLL4|9686|vestigial like 4 (Drosophila)##EU832515|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##EU832596|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK295839|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK310993|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##BC015088|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##NM_138807|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK092776|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK309733|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK303598|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##NM_003178|SYN2|6854|synapsin II##NM_133625|SYN2|6854|synapsin II##AK094464|SYN2|6854|synapsin II##BC051307|SYN2|6854|synapsin II##AB209088|SYN2|6854|synapsin II##U40215|SYN2|6854|synapsin II##AF077671|SYN2|6854|synapsin II##AF077737|SYN2|6854|synapsin II	0.909905	0.0	denovo_WM_7:9:0.870
chr5	21495752	21495866	reg1015135.p1	4.020	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	-36161	+	TSC_hg19_v1_chr5_+_21459621 AK290693	-36200	+	AK295087 BC031051 NM_001167667 NM_004934	-1507487	-	TSC_hg19_v1_chr5_-_22212879 AK314800	717072	-	BC047608 TSC_hg19_v1_chr5_-_22853454	1357637	-	L33477 NM_004061	1357921	-	BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK314800|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##BC047608|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##L33477|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)##NM_004061|CDH12|1010|cadherin 12, type 2 (N-cadherin 2)	1.136003	0.0	denovo_WM_7:59:0.280	denovo_WM_7:62:0.502
chr6	85108641	85108742	reg1010611.p1	4.020	+	AB023226 AK308190 BC063632 NM_014895 TSC_hg19_v1_chr6_-_84937334	-171367	-	TSC_hg19_v1_chr6_+_84743459 AK090775 AX746611 NM_138409 BC010003 AK307078 AK292736 BC039855	-365285	+	TSC_hg19_v1_chr6_+_84569438 AB527313 AM393033	-539227	+	TSC_hg19_v1_chr6_-_85472330 AJ010278	363634	-	AK310179 BC040697 TSC_hg19_v1_chr6_-_85473172	364479	-	HQ258462 NM_001080508 BC157841 BC132715	365234	-	AB023226|KIAA1009|22832|KIAA1009##AK308190|KIAA1009|22832|KIAA1009##BC063632|KIAA1009|22832|KIAA1009##NM_014895|KIAA1009|22832|KIAA1009##AK090775|MRAP2|112609|melanocortin 2 receptor accessory protein 2##NM_138409|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC010003|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK307078|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AK292736|MRAP2|112609|melanocortin 2 receptor accessory protein 2##BC039855|MRAP2|112609|melanocortin 2 receptor accessory protein 2##AM393033|CYB5R4|51167|cytochrome b5 reductase 4##AJ010278|TBX18|9096|T-box 18##AK310179|TBX18|9096|T-box 18##BC040697|TBX18|9096|T-box 18##HQ258462|TBX18|9096|T-box 18##NM_001080508|TBX18|9096|T-box 18##BC157841|TBX18|9096|T-box 18##BC132715|TBX18|9096|T-box 18	0.0	0.0	
chrX	53738827	53739007	reg1014340.p1	4.020	+	TSC_hg19_v1_chrX_-_53713665 BC018750 BC038184 DQ097177 NM_031407 AK056671	-25240	-	TSC_hg19_v1_chrX_-_53629608 AB071605	-109303	-	CR456723 TSC_hg19_v1_chrX_-_53461318 AF069134 BC008708 BC000372 BC000829 U73514 AF035555 U96132 NM_001037811 NM_004493	-277611	-	BC042108 NM_001184898	330692	-	BC053861 TSC_hg19_v1_chrX_-_54070368	331423	-	TSC_hg19_v1_chrX_-_54070423 AK304272 CR933612	331514	-	BC018750|HUWE1|10075|HECT, UBA and WWE domain containing 1##BC038184|HUWE1|10075|HECT, UBA and WWE domain containing 1##DQ097177|HUWE1|10075|HECT, UBA and WWE domain containing 1##NM_031407|HUWE1|10075|HECT, UBA and WWE domain containing 1##AK056671|HUWE1|10075|HECT, UBA and WWE domain containing 1##AB071605|HUWE1|10075|HECT, UBA and WWE domain containing 1##CR456723|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##AF069134|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC008708|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC000372|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC000829|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##U73514|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##AF035555|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##U96132|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##NM_001037811|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##NM_004493|HSD17B10|3028|hydroxysteroid (17-beta) dehydrogenase 10##BC042108|PHF8|23133|PHD finger protein 8##NM_001184898|PHF8|23133|PHD finger protein 8##BC053861|PHF8|23133|PHD finger protein 8##AK304272|PHF8|23133|PHD finger protein 8##CR933612|PHF8|23133|PHD finger protein 8	1.99124	0.0	denovo_WM_7:40:0.270	denovo_WM_7:41:0.727	denovo_WM_7:56:0.860
chr10	11760512	11760604	reg1012804.p2	4.019	+	TSC_hg19_v1_chr10_-_11653590 AK292944 AK311453 BC042943 D13644 BC010351 NM_014688	-106922	-	NM_001080491	-186285	-	TSC_hg19_v1_chr10_+_11207490 AK295511	-553066	+	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	23840	+	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	104800	+	AK056703 TSC_hg19_v1_chr10_-_11936707	176144	-	AK292944|USP6NL|9712|USP6 N-terminal like##BC042943|USP6NL|9712|USP6 N-terminal like##D13644|USP6NL|9712|USP6 N-terminal like##BC010351|USP6NL|9712|USP6 N-terminal like##NM_014688|USP6NL|9712|USP6 N-terminal like##NM_001080491|USP6NL|9712|USP6 N-terminal like##AK295511|CELF2|10659|CUGBP, Elav-like family member 2##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47##AK056703|LOC219731|219731|uncharacterized LOC219731	1.993911	0.0	
chr10	12035903	12036065	reg1008674.p1	4.019	+	AK056703 TSC_hg19_v1_chr10_-_11936707	-99282	-	TSC_hg19_v1_chr10_+_11865354 BC017269 BC048800 NM_153256	-170626	+	NM_024693 AF275677 TSC_hg19_v1_chr10_+_11784436 AF289604 AK222511 AK290902 BC009617 AK024562	-251586	+	TSC_hg19_v1_chr10_-_12084777 BC054011 AK310925 BC114964 BC115737 BC090919 NM_015542 AF318574 AF301013 AK096191	48824	-	NM_080599 TSC_hg19_v1_chr10_-_12085142	49098	-	TSC_hg19_v1_chr10_+_12110952 NM_018706	74952	+	AK056703|LOC219731|219731|uncharacterized LOC219731##BC017269|C10orf47|254427|chromosome 10 open reading frame 47##BC048800|C10orf47|254427|chromosome 10 open reading frame 47##NM_153256|C10orf47|254427|chromosome 10 open reading frame 47##NM_024693|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF275677|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AF289604|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK222511|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK290902|ECHDC3|79746|enoyl CoA hydratase domain containing 3##BC009617|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK024562|ECHDC3|79746|enoyl CoA hydratase domain containing 3##AK310925|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC114964|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC115737|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##BC090919|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_015542|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF318574|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AF301013|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##AK096191|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1	0.225913	0.0	
chr12	6538059	6538142	reg1015839.p2	4.019	+	TSC_hg19_v1_chr12_+_6493333 AK095418 BC026262 AK027080 L04270 NM_002342 AB527559 DQ891995 DQ895185 CU693188	-44728	+	AK304379 NM_001159575	-51578	-	NM_001038	-53196	-	AK315732 NM_001242 BC012160 M63928 DQ892296 EU176659 AB590221 CU680244	16046	+	NM_018009 TSC_hg19_v1_chr12_+_6561272 BC015017 AK223163 AK001005 AK002056 AK222956 AK098035 HQ258015	23194	+	TSC_hg19_v1_chr12_-_6579844 AF060538 BC023286 AK289498 AK296294 AK303137 AK309184 NM_014231 NM_016830 NM_199245	41714	-	AK095418|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##BC026262|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK027080|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##L04270|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##NM_002342|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ891995|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##DQ895185|LTBR|4055|lymphotoxin beta receptor (TNFR superfamily, member 3)##AK304379|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001159575|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001038|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##AK315732|CD27|939|CD27 molecule##NM_001242|CD27|939|CD27 molecule##BC012160|CD27|939|CD27 molecule##M63928|CD27|939|CD27 molecule##DQ892296|CD27|939|CD27 molecule##EU176659|CD27|939|CD27 molecule##NM_018009|TAPBPL|55080|TAP binding protein-like##BC015017|TAPBPL|55080|TAP binding protein-like##AK223163|TAPBPL|55080|TAP binding protein-like##AK001005|TAPBPL|55080|TAP binding protein-like##AK002056|TAPBPL|55080|TAP binding protein-like##AK222956|TAPBPL|55080|TAP binding protein-like##AK098035|TAPBPL|55080|TAP binding protein-like##HQ258015|TAPBPL|55080|TAP binding protein-like##AF060538|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##BC023286|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK289498|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK296294|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK303137|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##AK309184|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_014231|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_016830|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)##NM_199245|VAMP1|6843|vesicle-associated membrane protein 1 (synaptobrevin 1)	0.99834	0.0	denovo_WM_7:56:0.457	denovo_WM_7:57:0.457
chr1	40618890	40618957	reg1001475.p1	4.019	+	NM_000310 NM_001142604	-55782	-	AK302232 AK310799 TSC_hg19_v1_chr1_-_40562925	-55996	-	TSC_hg19_v1_chr1_-_40562918 BC008426	-56004	-	TSC_hg19_v1_chr1_+_40627044 BC113666 NM_012421	8116	+	TSC_hg19_v1_chr1_+_40627058 AK307662 U22377 X58480	8134	+	TSC_hg19_v1_chr1_+_40627068 HQ258544	8153	+	NM_000310|PPT1|5538|palmitoyl-protein thioesterase 1##NM_001142604|PPT1|5538|palmitoyl-protein thioesterase 1##AK302232|PPT1|5538|palmitoyl-protein thioesterase 1##AK310799|PPT1|5538|palmitoyl-protein thioesterase 1##BC008426|PPT1|5538|palmitoyl-protein thioesterase 1##BC113666|RLF|6018|rearranged L-myc fusion##NM_012421|RLF|6018|rearranged L-myc fusion##AK307662|RLF|6018|rearranged L-myc fusion##U22377|RLF|6018|rearranged L-myc fusion##HQ258544|RLF|6018|rearranged L-myc fusion	0.0	0.027108	
chr14	103860669	103860807	reg1013187.p2	4.019	+	TSC_hg19_v1_chr14_+_103851775 AF465413 BC024773 U64205	-8852	+	TSC_hg19_v1_chr14_+_103851772 BX161395	-8968	+	TSC_hg19_v1_chr14_+_103851700 NM_001128918 NM_001128919 NM_001128920 NM_001128921 NM_002376	-9035	+	CR542268 CU676412 M16364 TSC_hg19_v1_chr14_-_103988931	128142	-	M16451 L47647 TSC_hg19_v1_chr14_-_103989168 BC004914 BC019259 BC008323 BC001190 BC019281 BC010002 AK290101 AK312282 AK298198	128405	-	NM_001823 TSC_hg19_v1_chr14_-_103989206	128464	-	AF465413|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BC024773|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##U64205|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BX161395|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##CR542268|CKB|1152|creatine kinase, brain##M16364|CKB|1152|creatine kinase, brain##M16451|CKB|1152|creatine kinase, brain##L47647|CKB|1152|creatine kinase, brain##BC004914|CKB|1152|creatine kinase, brain##BC019259|CKB|1152|creatine kinase, brain##BC008323|CKB|1152|creatine kinase, brain##BC001190|CKB|1152|creatine kinase, brain##BC019281|CKB|1152|creatine kinase, brain##BC010002|CKB|1152|creatine kinase, brain##AK290101|CKB|1152|creatine kinase, brain##AK312282|CKB|1152|creatine kinase, brain##AK298198|CKB|1152|creatine kinase, brain##NM_001823|CKB|1152|creatine kinase, brain	0.0	0.0	
chr19	57790858	57790945	reg1011635.p2	4.019	+	TSC_hg19_v1_chr19_+_57752051 NM_001023563 NM_001145078	-38844	+	AK297977 TSC_hg19_v1_chr19_+_57751999	-38913	+	AY661554 NM_001015879 NM_003160 AK301886 NM_001015878 AF054621	-48498	+	TSC_hg19_v1_chr19_+_57791351 AK298106	455	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	986	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	41013	+	NM_001023563|ZNF805|390980|zinc finger protein 805##NM_001145078|ZNF805|390980|zinc finger protein 805##AK297977|ZNF805|390980|zinc finger protein 805##AY661554|AURKC|6795|aurora kinase C##NM_001015879|AURKC|6795|aurora kinase C##NM_003160|AURKC|6795|aurora kinase C##NM_001015878|AURKC|6795|aurora kinase C##AF054621|AURKC|6795|aurora kinase C##AK298106|ZNF460|10794|zinc finger protein 460##AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543	0.995194	0.0	denovo_WM_7:-56:0.347	denovo_WM_7:-58:0.595
chr2	32961081	32961191	reg1013901.p1	4.019	+	NM_001193509 NM_017735 AK299196 BC063791 TSC_hg19_v1_chr2_+_32853177 AK027570	-108002	+	TSC_hg19_v1_chr2_+_32582308 AF265555	-378826	+	TSC_hg19_v1_chr2_+_32582131 NM_016252	-379023	+	NM_206943	211232	+	TSC_hg19_v1_chr2_+_33359657 NM_000627 NM_001166264 NM_001166265 NM_001166266 AB208801 BC130289 BC144127 BC144128 M34057 AB384737 AF489528	398569	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	700312	+	NM_001193509|TTC27|55622|tetratricopeptide repeat domain 27##NM_017735|TTC27|55622|tetratricopeptide repeat domain 27##AK299196|TTC27|55622|tetratricopeptide repeat domain 27##BC063791|TTC27|55622|tetratricopeptide repeat domain 27##AK027570|TTC27|55622|tetratricopeptide repeat domain 27##AF265555|BIRC6|57448|baculoviral IAP repeat containing 6##NM_016252|BIRC6|57448|baculoviral IAP repeat containing 6##NM_206943|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_000627|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166264|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166265|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166266|LTBP1|4052|latent transforming growth factor beta binding protein 1##AB208801|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC130289|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144127|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144128|LTBP1|4052|latent transforming growth factor beta binding protein 1##M34057|LTBP1|4052|latent transforming growth factor beta binding protein 1##AF489528|LTBP1|4052|latent transforming growth factor beta binding protein 1##AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)	0.015525	0.0	
chr2	90485369	90485457	reg1009540.p2	4.019	+	TSC_hg19_v1_chr2_+_90211706 Z69013	-273695	+	TSC_hg19_v1_chr2_+_90077732 AJ131061	-407659	+	Z27171 L06158 AF490907 X72480 AF490924 X72424 X72441 X72477 U44792 X72427 AJ548508 L01279 L38434 M74019 M87478 S67637 U43765 U43766 U43770 U43773 U66190 X85996 X85997 Y14736 AJ010446 BC073775 AF417853 TSC_hg19_v1_chr2_-_89619885 BC070334	-865560	-	TSC_hg19_v1_chr2_-_91847997 BC030764	1362590	-	AK097438 BC021716 NM_144705 AK296678 CU692394	5051837	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	5206069	+	BC070334|IGKC|3514|immunoglobulin kappa constant##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein	0.0	0.0	
chr8	11657954	11658088	reg1004489.p2	4.019	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	-30753	+	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	-96301	+	S76617 NM_001715 BC018703 BC004473 BC038555	-306428	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	2163	+	TSC_hg19_v1_chr8_+_11660249 AK296043 AK315993 AK311246 X69141 AK301617	2217	+	BC003573 BC009251 TSC_hg19_v1_chr8_+_11660279 S76822	2260	+	NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK296043|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK315993|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK311246|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##X69141|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##AK301617|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##BC003573|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##BC009251|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1##S76822|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.0	0.0	
chr9	43398063	43398191	reg1017082.p1	4.019	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-264640	-	NM_001099279 NM_199244	-680894	+	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	-1029769	+	NM_001145196	232602	-	TSC_hg19_v1_chr9_+_43684876 NM_001201380	286716	+	TSC_hg19_v1_chr9_+_45441926 BC006438	2043799	+	AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##BC006438|LOC100132167|100132167|uncharacterized LOC100132167	1.84866	0.0	denovo_WM_7:78:0.887	denovo_WM_7:-99:0.945
chr10	24529745	24529876	reg1014942.p2	4.018	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-31716	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-32022	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-546133	+	TSC_hg19_v1_chr10_+_24755441 AK300422	225634	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	225659	+	AK307604 TSC_hg19_v1_chr10_-_25012174	482363	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	1.114857	0.0	denovo_WM_7:-7:0.873
chr11	75598163	75598257	reg1011776.p2	4.018	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-71932	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-71988	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-118287	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	319302	-	TSC_hg19_v1_chr11_-_75921806 AK075540	323594	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	493798	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.894278	0.0	denovo_WM_7:-9:0.453
chr12	111873076	111873243	reg1007477.p2	4.018	+	TSC_hg19_v1_chr12_+_111843754 AF055581 NM_005475	-29410	+	TSC_hg19_v1_chr12_-_111806900 BC014091 BC018996 AK299344 NM_001177996 NM_001177997 NM_144671	-66249	-	BC034809 AK056918 TSC_hg19_v1_chr12_-_111806865	-66313	-	AK126309 TSC_hg19_v1_chr12_-_111893987	20764	-	TSC_hg19_v1_chr12_-_112036257 AK095017	163116	-	TSC_hg19_v1_chr12_-_112036908 AK307803	163754	-	AF055581|SH2B3|10019|SH2B adaptor protein 3##NM_005475|SH2B3|10019|SH2B adaptor protein 3##BC014091|FAM109A|144717|family with sequence similarity 109, member A##BC018996|FAM109A|144717|family with sequence similarity 109, member A##AK299344|FAM109A|144717|family with sequence similarity 109, member A##NM_001177996|FAM109A|144717|family with sequence similarity 109, member A##NM_001177997|FAM109A|144717|family with sequence similarity 109, member A##NM_144671|FAM109A|144717|family with sequence similarity 109, member A##BC034809|FAM109A|144717|family with sequence similarity 109, member A##AK056918|FAM109A|144717|family with sequence similarity 109, member A##AK095017|ATXN2|6311|ataxin 2##AK307803|ATXN2|6311|ataxin 2	0.8018	0.0	denovo_WM_7:17:0.394	denovo_WM_7:18:0.321
chr1	32531700	32531778	reg1009791.p1	4.018	+	TSC_hg19_v1_chr1_+_32479463 AK293369 AK091346 AX746925 AK312916 AK303218 BC000717 BC019109 M88108 NM_006559 BC010132 AB590354 DQ895323 U78971	-52241	+	TSC_hg19_v1_chr1_-_32403992 NM_080391	-127742	-	TSC_hg19_v1_chr1_-_32403950 BC018662 BC070181	-127808	-	TSC_hg19_v1_chr1_+_32538502 AK023331 NM_018056	6765	+	AL136695 TSC_hg19_v1_chr1_+_32538539 AK001177 BC004364 AK296653 AK298766 AK300293	6835	+	TSC_hg19_v1_chr1_+_32573647 NM_012316 AB621806 AK002111 AK315490 AK128609 BC020520 AF060543	41908	+	AK293369|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK091346|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK312916|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##AK303218|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC000717|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC019109|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##M88108|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_006559|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##BC010132|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##DQ895323|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##U78971|KHDRBS1|10657|KH domain containing, RNA binding, signal transduction associated 1##NM_080391|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC018662|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##BC070181|PTP4A2|8073|protein tyrosine phosphatase type IVA, member 2##AK023331|TMEM39B|55116|transmembrane protein 39B##NM_018056|TMEM39B|55116|transmembrane protein 39B##AL136695|TMEM39B|55116|transmembrane protein 39B##AK001177|TMEM39B|55116|transmembrane protein 39B##BC004364|TMEM39B|55116|transmembrane protein 39B##AK296653|TMEM39B|55116|transmembrane protein 39B##AK298766|TMEM39B|55116|transmembrane protein 39B##AK300293|TMEM39B|55116|transmembrane protein 39B##NM_012316|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK002111|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK315490|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AK128609|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##BC020520|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)##AF060543|KPNA6|23633|karyopherin alpha 6 (importin alpha 7)	1.130855	0.0	
chr19	10376239	10376372	reg1009610.p2	4.018	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	-13313	+	TSC_hg19_v1_chr19_+_10362889 BC009858	-13407	+	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	-13658	+	NM_000201	5211	+	M24283 BC015969 AK301412 J03132 TSC_hg19_v1_chr19_+_10381795 AK130659 AK312636 AK298054 AK298983 X06990 AB590404 AF340038 BT006854 AF340039	5500	+	BC029364 NM_001039132 NM_001544 NM_022377 BC000046 L27670 L27671 S78852 DQ892650 DQ895889 BT009816	21360	+	AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##NM_000201|ICAM1|3383|intercellular adhesion molecule 1##M24283|ICAM1|3383|intercellular adhesion molecule 1##BC015969|ICAM1|3383|intercellular adhesion molecule 1##AK301412|ICAM1|3383|intercellular adhesion molecule 1##J03132|ICAM1|3383|intercellular adhesion molecule 1##AK130659|ICAM1|3383|intercellular adhesion molecule 1##AK312636|ICAM1|3383|intercellular adhesion molecule 1##AK298054|ICAM1|3383|intercellular adhesion molecule 1##AK298983|ICAM1|3383|intercellular adhesion molecule 1##X06990|ICAM1|3383|intercellular adhesion molecule 1##AF340038|ICAM1|3383|intercellular adhesion molecule 1##BT006854|ICAM1|3383|intercellular adhesion molecule 1##AF340039|ICAM1|3383|intercellular adhesion molecule 1##BC029364|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_001039132|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_001544|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##NM_022377|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##BC000046|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##L27670|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##L27671|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##S78852|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##DQ892650|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##DQ895889|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)##BT009816|ICAM4|3386|intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)	1.149884	0.012175	denovo_WM_7:73:0.317
chr19	13392152	13392251	reg1016981.p1	4.018	+	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-128021	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-130909	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-131062	-	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	224975	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	450378	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	466518	+	BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130	0.99985	0.0	
chr20	62633258	62633330	reg1013744.p2	4.018	+	TSC_hg19_v1_chr20_+_62612576 AB527848	-20708	+	AF221842 TSC_hg19_v1_chr20_+_62612506 AF026031 AK314310 AB019219 BC001666	-20763	+	TSC_hg19_v1_chr20_+_62612487 AK225993 AK001554	-20817	+	AJ243896 AF270652 BC111390 NM_018419 BC035513 BC038590 BC073971 TSC_hg19_v1_chr20_-_62680993 AB033888	47644	-	NM_198723	55144	+	NM_003195	60715	+	AF221842|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AF026031|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK314310|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AB019219|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##BC001666|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK225993|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AK001554|PRPF6|24148|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)##AJ243896|SOX18|54345|SRY (sex determining region Y)-box 18##AF270652|SOX18|54345|SRY (sex determining region Y)-box 18##BC111390|SOX18|54345|SRY (sex determining region Y)-box 18##NM_018419|SOX18|54345|SRY (sex determining region Y)-box 18##BC035513|SOX18|54345|SRY (sex determining region Y)-box 18##BC038590|SOX18|54345|SRY (sex determining region Y)-box 18##BC073971|SOX18|54345|SRY (sex determining region Y)-box 18##AB033888|SOX18|54345|SRY (sex determining region Y)-box 18##NM_198723|TCEA2|6919|transcription elongation factor A (SII), 2##NM_003195|TCEA2|6919|transcription elongation factor A (SII), 2	2.055789	0.0	denovo_WM_7:61:0.744
chr2	205190236	205190356	reg1012514.p2	4.018	+	AK314985 AJ277832 NM_012092 BC028006 BC028210 AB023135 AF218312 CU688368 CU688430	-388802	+	BC070162 AF414120 NM_001037631 NM_005214 AK313732 BC069566 BC074893 BC074842 AB590653 AF486806 AY209009 AY792514 AY999702 DQ785106 L15006	-457709	+	BC093698 BC112085 TSC_hg19_v1_chr2_+_204571384 AK292986 AB590652 AF222341 AF222342 AF222343 AJ295273	-618897	+	TSC_hg19_v1_chr2_+_205410465 AB053321 NM_057177 NM_152526 NM_205863	220194	+	TSC_hg19_v1_chr2_+_205410560 AX765687 AX765741 AK056157	220298	+	TSC_hg19_v1_chr2_+_205410716 AB073472 AB092439 AF428250 AF428251 AF466152	220423	+	AK314985|ICOS|29851|inducible T-cell co-stimulator##AJ277832|ICOS|29851|inducible T-cell co-stimulator##NM_012092|ICOS|29851|inducible T-cell co-stimulator##BC028006|ICOS|29851|inducible T-cell co-stimulator##BC028210|ICOS|29851|inducible T-cell co-stimulator##AB023135|ICOS|29851|inducible T-cell co-stimulator##BC070162|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AF414120|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##NM_001037631|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##NM_005214|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AK313732|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC069566|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC074893|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC074842|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AF486806|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY209009|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY792514|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY999702|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##DQ785106|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##L15006|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC093698|CD28|940|CD28 molecule##BC112085|CD28|940|CD28 molecule##AK292986|CD28|940|CD28 molecule##AF222341|CD28|940|CD28 molecule##AF222342|CD28|940|CD28 molecule##AF222343|CD28|940|CD28 molecule##AJ295273|CD28|940|CD28 molecule##AB053321|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##NM_057177|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##NM_152526|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##NM_205863|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AK056157|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AB073472|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AB092439|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428250|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF428251|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)##AF466152|PARD3B|117583|par-3 partitioning defective 3 homolog B (C. elegans)	0.773394	0.432656	CTCF.p2:8:0.433	denovo_WM_7:-26:0.696
chr4	477333	477434	reg1015450.p2	4.018	+	BC098116 BC098259 BC098291 BC099730 TSC_hg19_v1_chr4_-_467940 BC040413 BC036795 BC060316 BC065035 AK024359 AK303674	-9480	-	TSC_hg19_v1_chr4_+_331608 BC036854 BC057244 L15309 BC074853	-145713	+	TSC_hg19_v1_chr4_+_331602 NM_003441	-145788	+	TSC_hg19_v1_chr4_-_492928 AL834155 AK021514	15537	-	NM_001127178 NM_017733 TSC_hg19_v1_chr4_+_493009 AK296507 AK074815 AB162713	15620	+	TSC_hg19_v1_chr4_+_493025 AK074715 AK097244 AK309107 BC144576	15643	+	BC098116|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098259|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC098291|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC099730|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC040413|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC060316|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK024359|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##AK303674|ABCA11P|79963|ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene##BC036854|ZNF141|7700|zinc finger protein 141##BC057244|ZNF141|7700|zinc finger protein 141##L15309|ZNF141|7700|zinc finger protein 141##BC074853|ZNF141|7700|zinc finger protein 141##NM_003441|ZNF141|7700|zinc finger protein 141##AL834155|ZNF721|170960|zinc finger protein 721##AK021514|ZNF721|170960|zinc finger protein 721##NM_001127178|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##NM_017733|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK296507|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074815|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AB162713|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK074715|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK097244|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##AK309107|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G##BC144576|PIGG|54872|phosphatidylinositol glycan anchor biosynthesis, class G	0.992394	0.0	denovo_WM_7:-33:0.760
chr5	32325786	32325966	reg1014838.p1	4.018	+	TSC_hg19_v1_chr5_-_32313095 AK000483 NM_001040446	-12743	-	AB385495 CU691208 TSC_hg19_v1_chr5_-_32313046 BC057393 AB051469 AY028703	-12871	-	TSC_hg19_v1_chr5_-_32174429 BC033725 AK057544 AK075156 NM_022130	-151445	-	TSC_hg19_v1_chr5_-_32388605 AK295297	62744	-	TSC_hg19_v1_chr5_-_32388710 AK025481	62848	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	77477	-	AK000483|MTMR12|54545|myotubularin related protein 12##NM_001040446|MTMR12|54545|myotubularin related protein 12##BC057393|MTMR12|54545|myotubularin related protein 12##AB051469|MTMR12|54545|myotubularin related protein 12##AY028703|MTMR12|54545|myotubularin related protein 12##BC033725|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK057544|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK075156|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##NM_022130|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK295297|ZFR|51663|zinc finger RNA binding protein##AK025481|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein	1.554771	0.0	denovo_WM_7:17:0.540
chr9	5451914	5451980	reg1016409.p2	4.018	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-1440	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-14067	-	X00949 DQ893302 DQ896468 BC005956 NM_006911	-112139	-	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	58716	+	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	177180	+	BC036853 TSC_hg19_v1_chr9_-_5630098	178143	-	NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##X00949|RLN1|6013|relaxin 1##DQ893302|RLN1|6013|relaxin 1##DQ896468|RLN1|6013|relaxin 1##BC005956|RLN1|6013|relaxin 1##NM_006911|RLN1|6013|relaxin 1##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46	0.994175	0.0	denovo_WM_7:-93:0.478	denovo_WM_7:-94:0.484
chr12	1664072	1664252	reg1011970.p2	4.017	+	TSC_hg19_v1_chr12_+_1100388 NM_178039 NM_178040 AB015617 AK091577 AB053470 AB053468 AB053469 AB053471	-563710	+	AF125948 TSC_hg19_v1_chr12_-_1058797 AK312026 BC042136 AK290047 BC104015 BC104016 BC104017 BC114507 BC114954 AK292160 AK294709 AK299283 AF125949 NM_134424	-605336	-	BC013629 TSC_hg19_v1_chr12_+_1017145	-647080	+	BC028132 NM_152441 TSC_hg19_v1_chr12_-_1703361	39189	-	AY009399 NM_030775	62059	+	BC001749 NM_032642	74249	+	NM_178039|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##NM_178040|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB015617|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AK091577|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053470|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053468|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053469|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AB053471|ERC1|23085|ELKS/RAB6-interacting/CAST family member 1##AF125948|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK312026|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC042136|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK290047|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104015|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104016|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC104017|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114507|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC114954|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK292160|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK294709|RAD52|5893|RAD52 homolog (S. cerevisiae)##AK299283|RAD52|5893|RAD52 homolog (S. cerevisiae)##AF125949|RAD52|5893|RAD52 homolog (S. cerevisiae)##NM_134424|RAD52|5893|RAD52 homolog (S. cerevisiae)##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1##BC028132|FBXL14|144699|F-box and leucine-rich repeat protein 14##NM_152441|FBXL14|144699|F-box and leucine-rich repeat protein 14##AY009399|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_030775|WNT5B|81029|wingless-type MMTV integration site family, member 5B##BC001749|WNT5B|81029|wingless-type MMTV integration site family, member 5B##NM_032642|WNT5B|81029|wingless-type MMTV integration site family, member 5B	0.992571	0.0	
chr12	65176066	65176246	reg1015040.p2	4.017	+	TSC_hg19_v1_chr12_-_65153217 NM_002076	-22946	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	-22972	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	-22997	-	NM_015279 TSC_hg19_v1_chr12_+_65218409 AK055404	42227	+	TSC_hg19_v1_chr12_+_65218446 AK299508	42288	+	AB527171 TSC_hg19_v1_chr12_+_65224283	48092	+	NM_002076|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##NM_015279|TBC1D30|23329|TBC1 domain family, member 30##AK055404|TBC1D30|23329|TBC1 domain family, member 30##AK299508|TBC1D30|23329|TBC1 domain family, member 30	1.995451	0.0	denovo_WM_7:21:0.231	denovo_WM_7:22:0.753	denovo_WM_7:-74:0.928
chr14	21429325	21429478	reg1014177.p2	4.017	+	TSC_hg19_v1_chr14_+_21423628 NM_002934 X55988 BC093678 BC093680 M28129 M24157 BC096059 M30510	-5753	+	TSC_hg19_v1_chr14_+_21359543 NM_002935 X15161 M28128 BC096060 BC096061 BC096062	-69842	+	TSC_hg19_v1_chr14_-_21271004 AK312100 BC022882 BC005324 NM_002933 NM_198234 NM_198235	-158383	-	NM_001029991 NM_022734	28563	+	TSC_hg19_v1_chr14_+_21458138 AF321002 AK024512 AK303484 AK304180 AK315999 BC005053 AB590821 CU674975	28745	+	NM_014579 AK314974 AF186081 D83039 BC096723 BC098254 BC098274 BC110057 AB527985	38108	+	NM_002934|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##X55988|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##BC093678|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##BC093680|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##M28129|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##M24157|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##BC096059|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##M30510|RNASE2|6036|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)##NM_002935|RNASE3|6037|ribonuclease, RNase A family, 3##X15161|RNASE3|6037|ribonuclease, RNase A family, 3##M28128|RNASE3|6037|ribonuclease, RNase A family, 3##BC096060|RNASE3|6037|ribonuclease, RNase A family, 3##BC096061|RNASE3|6037|ribonuclease, RNase A family, 3##BC096062|RNASE3|6037|ribonuclease, RNase A family, 3##AK312100|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##BC022882|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##BC005324|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_002933|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198234|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198235|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_001029991|METTL17|64745|methyltransferase like 17##NM_022734|METTL17|64745|methyltransferase like 17##AF321002|METTL17|64745|methyltransferase like 17##AK024512|METTL17|64745|methyltransferase like 17##AK303484|METTL17|64745|methyltransferase like 17##AK304180|METTL17|64745|methyltransferase like 17##AK315999|METTL17|64745|methyltransferase like 17##BC005053|METTL17|64745|methyltransferase like 17##NM_014579|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##AK314974|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##AF186081|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##D83039|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC096723|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC098254|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC098274|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2##BC110057|SLC39A2|29986|solute carrier family 39 (zinc transporter), member 2	0.990146	0.0	
chr16	89474160	89474228	reg1013417.p1	4.017	+	AK293862 NM_001242885	-86654	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-123238	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-124120	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	82737	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	100620	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	152871	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.993845	0.0	
chr19	18289394	18289516	reg1015180.p1	4.017	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	-4814	+	TSC_hg19_v1_chr19_+_18284622 BC021136 BC031020 AF097362	-4834	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	-4864	+	TSC_hg19_v1_chr19_+_18304077 NM_032683 BC093008 BC005064 BC028146 AF320622 AF416712 AK094091	14580	+	M28210 TSC_hg19_v1_chr19_-_18314858 AF254795 BC011782 AK293467 AK289559 NM_002866	25349	-	NM_001098819 U88712	45847	-	DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30##BC021136|IFI30|10437|interferon, gamma-inducible protein 30##BC031020|IFI30|10437|interferon, gamma-inducible protein 30##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30##NM_032683|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC093008|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC005064|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##BC028146|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF320622|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AF416712|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##AK094091|MPV17L2|84769|MPV17 mitochondrial membrane protein-like 2##M28210|RAB3A|5864|RAB3A, member RAS oncogene family##AF254795|RAB3A|5864|RAB3A, member RAS oncogene family##BC011782|RAB3A|5864|RAB3A, member RAS oncogene family##AK293467|RAB3A|5864|RAB3A, member RAS oncogene family##AK289559|RAB3A|5864|RAB3A, member RAS oncogene family##NM_002866|RAB3A|5864|RAB3A, member RAS oncogene family##NM_001098819|PDE4C|5143|phosphodiesterase 4C, cAMP-specific##U88712|PDE4C|5143|phosphodiesterase 4C, cAMP-specific	1.988013	0.0	denovo_WM_7:25:0.274	denovo_WM_7:26:0.709	denovo_WM_7:41:0.845
chr8	71276321	71276421	reg1013837.p1	4.017	+	TSC_hg19_v1_chr8_-_70983549 AF319458 AK022595 NM_024504	-292816	-	TSC_hg19_v1_chr8_-_70983468 BC052311	-292900	-	AK308488 AF205075 AK096879 NM_030958	-529122	-	BC092442 TSC_hg19_v1_chr8_-_71315599	39176	-	TSC_hg19_v1_chr8_-_71316041 NM_006540 X97674 AK308426	39655	-	BT007359 CR541654 CR541739 DQ892688 DQ895932 TSC_hg19_v1_chr8_-_71520586 AK292777 BC020283 BC000687 AK289397 X63679 BC037738	244151	-	AF319458|PRDM14|63978|PR domain containing 14##AK022595|PRDM14|63978|PR domain containing 14##NM_024504|PRDM14|63978|PR domain containing 14##BC052311|PRDM14|63978|PR domain containing 14##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC092442|NCOA2|10499|nuclear receptor coactivator 2##NM_006540|NCOA2|10499|nuclear receptor coactivator 2##X97674|NCOA2|10499|nuclear receptor coactivator 2##AK308426|NCOA2|10499|nuclear receptor coactivator 2##BT007359|TRAM1|23471|translocation associated membrane protein 1##CR541654|TRAM1|23471|translocation associated membrane protein 1##CR541739|TRAM1|23471|translocation associated membrane protein 1##DQ892688|TRAM1|23471|translocation associated membrane protein 1##DQ895932|TRAM1|23471|translocation associated membrane protein 1##AK292777|TRAM1|23471|translocation associated membrane protein 1##BC020283|TRAM1|23471|translocation associated membrane protein 1##BC000687|TRAM1|23471|translocation associated membrane protein 1##AK289397|TRAM1|23471|translocation associated membrane protein 1##X63679|TRAM1|23471|translocation associated membrane protein 1##BC037738|TRAM1|23471|translocation associated membrane protein 1	0.0	0.0	
chrX	1684027	1684207	reg1010486.p1	4.017	+	BC043610 GQ280263 NM_178129 AK126147	-28079	-	AK301844 NM_001173473	-111466	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-112316	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	26412	+	NM_004043 U11090	30230	+	AK314922 NM_001171038 U11091 M83779 NM_001171039 BC001620	49886	+	BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase##AK314922|ASMT|438|acetylserotonin O-methyltransferase##NM_001171038|ASMT|438|acetylserotonin O-methyltransferase##U11091|ASMT|438|acetylserotonin O-methyltransferase##M83779|ASMT|438|acetylserotonin O-methyltransferase##NM_001171039|ASMT|438|acetylserotonin O-methyltransferase##BC001620|ASMT|438|acetylserotonin O-methyltransferase	0.0	0.0	
chr10	24500206	24500340	reg1015816.p2	4.016	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-2179	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-2485	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-516596	+	TSC_hg19_v1_chr10_+_24755441 AK300422	255171	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	255196	+	AK307604 TSC_hg19_v1_chr10_-_25012174	511900	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	1.99224	0.0	denovo_WM_7:24:0.564	denovo_WM_7:25:0.431	denovo_WM_7:39:0.486	denovo_WM_7:40:0.512
chr13	96576539	96576605	reg1011025.p1	4.016	+	TSC_hg19_v1_chr13_+_96329409 BC047936 BC020215 BC033823 AB384852 CU690538	-247114	+	TSC_hg19_v1_chr13_+_96329401 AK312861	-247171	+	AK292947 NM_006260 TSC_hg19_v1_chr13_+_96329392	-247178	+	CU688350 TSC_hg19_v1_chr13_-_96705666 BC125233 BC125234 AF227906 BC017759 BC067807 BC111021 AK001735 BC032302 NM_020121	129078	-	AF539426 NM_153456	166520	+	AK122639 NM_080818 AK313684	1070040	-	BC047936|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##BC033823|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##AK312861|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##AK292947|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##NM_006260|DNAJC3|5611|DnaJ (Hsp40) homolog, subfamily C, member 3##BC125233|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##BC125234|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##AF227906|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##BC017759|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##BC067807|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##BC111021|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##AK001735|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##BC032302|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##NM_020121|UGGT2|55757|UDP-glucose glycoprotein glucosyltransferase 2##AF539426|HS6ST3|266722|heparan sulfate 6-O-sulfotransferase 3##NM_153456|HS6ST3|266722|heparan sulfate 6-O-sulfotransferase 3##AK122639|OXGR1|27199|oxoglutarate (alpha-ketoglutarate) receptor 1##NM_080818|OXGR1|27199|oxoglutarate (alpha-ketoglutarate) receptor 1##AK313684|OXGR1|27199|oxoglutarate (alpha-ketoglutarate) receptor 1	1.99575	0.0	denovo_WM_7:83:0.561	denovo_WM_7:84:0.281	denovo_WM_7:98:0.332	denovo_WM_7:99:0.613
chr16	30885169	30885333	reg1018667.p2	4.016	+	TSC_hg19_v1_chr16_-_30798510 AB002324 NM_001080417	-86854	-	TSC_hg19_v1_chr16_-_30787317 AK057076	-97920	-	TSC_hg19_v1_chr16_+_30773642 AK297531 AK304521 AK027406 AK293710 BX640763 CR627431 AK291666 AK131310 AK294258 AF122819 AB014561 BC006133 BC011769 BC018647	-111609	+	BC010017 AJ223980 CU691314 TSC_hg19_v1_chr16_-_30905327	20050	-	TSC_hg19_v1_chr16_-_30905377 BC019071 NM_004765	20144	-	TSC_hg19_v1_chr16_-_30905474 BC058863	20285	-	AB002324|ZNF629|23361|zinc finger protein 629##NM_001080417|ZNF629|23361|zinc finger protein 629##AK297531|RNF40|9810|ring finger protein 40##AK304521|RNF40|9810|ring finger protein 40##AK027406|RNF40|9810|ring finger protein 40##AK293710|RNF40|9810|ring finger protein 40##BX640763|RNF40|9810|ring finger protein 40##CR627431|RNF40|9810|ring finger protein 40##AK291666|RNF40|9810|ring finger protein 40##AK131310|RNF40|9810|ring finger protein 40##AK294258|RNF40|9810|ring finger protein 40##AF122819|RNF40|9810|ring finger protein 40##AB014561|RNF40|9810|ring finger protein 40##BC006133|RNF40|9810|ring finger protein 40##BC011769|RNF40|9810|ring finger protein 40##BC018647|RNF40|9810|ring finger protein 40##AJ223980|BCL7C|9274|B-cell CLL/lymphoma 7C##BC019071|BCL7C|9274|B-cell CLL/lymphoma 7C##NM_004765|BCL7C|9274|B-cell CLL/lymphoma 7C##BC058863|BCL7C|9274|B-cell CLL/lymphoma 7C	1.98954	0.0	denovo_WM_7:-73:0.884	denovo_WM_7:76:0.837
chr1	83945621	83945719	reg1014369.p1	4.016	+	AF104266 AF104938 AF104939 NM_012302	-1679589	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-2173743	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-4473243	-	AK097722 TSC_hg19_v1_chr1_-_84326308	380598	-	TSC_hg19_v1_chr1_-_84326677 BC036594	381006	-	AK126792 BC048970 BC032829 TSC_hg19_v1_chr1_-_84464848 BC060878 BC028350 NM_024686	519126	-	AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK126792|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC048970|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC032829|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC060878|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC028350|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##NM_024686|TTLL7|79739|tubulin tyrosine ligase-like family, member 7	0.0	0.0	
chr19	4867937	4868102	reg1004920.p1	4.016	+	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	-277	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	-354	-	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	-374	-	NM_001080523	34859	-	TSC_hg19_v1_chr19_+_4909512 AK307239 AK303361 NM_001048201 AK074377 AK314579	41480	+	TSC_hg19_v1_chr19_+_4910185 AK289389	42159	+	AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##NM_001080523|ARRDC5|645432|arrestin domain containing 5##AK307239|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK303361|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_001048201|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK074377|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK314579|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1	0.0	0.0	
chr7	132485654	132485720	reg1014655.p2	4.016	+	BC028744 NM_181775	-152241	-	TSC_hg19_v1_chr7_-_132261268 NM_001105543 NM_020911	-224392	-	AK123428 TSC_hg19_v1_chr7_-_132261230	-224457	-	AB528286 TSC_hg19_v1_chr7_-_132766813 AK294071 AK000427 NM_017812 AK310236	281077	-	TSC_hg19_v1_chr7_-_132766851 BC011596 BC014839 AK129533	281159	-	TSC_hg19_v1_chr7_+_132937838 NM_001037126 NM_021807 AF380839 AK027688 AL831989 AK298191 BC067263 BC026174 CU693148 AB051486	452162	+	BC028744|PLXNA4|91584|plexin A4##NM_181775|PLXNA4|91584|plexin A4##NM_001105543|PLXNA4|91584|plexin A4##NM_020911|PLXNA4|91584|plexin A4##AK123428|PLXNA4|91584|plexin A4##AK294071|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK000427|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_017812|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK310236|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC011596|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##BC014839|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##AK129533|CHCHD3|54927|coiled-coil-helix-coiled-coil-helix domain containing 3##NM_001037126|EXOC4|60412|exocyst complex component 4##NM_021807|EXOC4|60412|exocyst complex component 4##AF380839|EXOC4|60412|exocyst complex component 4##AK027688|EXOC4|60412|exocyst complex component 4##AL831989|EXOC4|60412|exocyst complex component 4##AK298191|EXOC4|60412|exocyst complex component 4##BC067263|EXOC4|60412|exocyst complex component 4##BC026174|EXOC4|60412|exocyst complex component 4##AB051486|EXOC4|60412|exocyst complex component 4	0.814256	0.0	denovo_WM_7:-59:0.759
chr7	148994484	148994633	reg1011432.p1	4.016	+	AK098351 AK310453 AK310396 TSC_hg19_v1_chr7_+_148982401 AK303492	-12172	+	TSC_hg19_v1_chr7_+_148959286 AK131504 NM_001195220 BC131569 AB528912	-35238	+	TSC_hg19_v1_chr7_+_148936741 AK074821 NM_012256 BC022785 EU446738 CU692712	-57764	+	TSC_hg19_v1_chr7_-_149157908 AB033111 NM_015694	163401	-	TSC_hg19_v1_chr7_-_149194795 BC068505 BC035586	200227	-	TSC_hg19_v1_chr7_-_149194830 AK291814	200282	-	AK098351|LOC155060|155060|AI894139 pseudogene##AK310453|LOC155060|155060|AI894139 pseudogene##AK310396|LOC155060|155060|AI894139 pseudogene##AK303492|LOC155060|155060|AI894139 pseudogene##NM_001195220|ZNF783|100289678|zinc finger family member 783##AK074821|ZNF212|7988|zinc finger protein 212##NM_012256|ZNF212|7988|zinc finger protein 212##BC022785|ZNF212|7988|zinc finger protein 212##EU446738|ZNF212|7988|zinc finger protein 212##AB033111|ZNF777|27153|zinc finger protein 777##NM_015694|ZNF777|27153|zinc finger protein 777##BC068505|ZNF746|155061|zinc finger protein 746##BC035586|ZNF746|155061|zinc finger protein 746##AK291814|ZNF746|155061|zinc finger protein 746	0.0	0.0	
chr8	141601684	141601847	reg1012355.p2	4.016	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-80202	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-80373	+	AK128755 NM_031466	-133088	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	43859	-	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	409491	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	536972	+	AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3	0.0	0.0	
chr12	769355	769489	reg1017026.p2	4.015	+	TSC_hg19_v1_chr12_-_752800 AK298043	-16603	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-17244	+	AB089940 NM_173593	-199880	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	3293	-	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	92734	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	93334	+	BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1	1.909137	0.0	denovo_WM_7:91:0.232	denovo_WM_7:96:0.357
chr16	66874945	66875056	reg1016539.p1	4.015	+	TSC_hg19_v1_chr16_-_66864880 U50939 AK307677 AK097680 AK312784 NM_001018159 NM_001018160 NM_003905	-10114	-	DQ892741 DQ895987 BC000480 BC013301 TSC_hg19_v1_chr16_-_66864855 AY197612 AK298159 AL136798	-10168	-	AK093213 AX747993 NM_001136505	-39478	-	AY075019 NM_005182 BC033865 DQ895264 EU176243	3335	+	AY075020 NM_001014435	3840	+	TSC_hg19_v1_chr16_+_66914417 AK292539 NM_020786 AB037769 BC028030	39444	+	U50939|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK307677|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK097680|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK312784|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##NM_001018159|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##NM_001018160|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##NM_003905|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##DQ892741|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##DQ895987|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##BC000480|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##BC013301|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AY197612|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK298159|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AL136798|NAE1|8883|NEDD8 activating enzyme E1 subunit 1##AK093213|CCDC79|283847|coiled-coil domain containing 79##NM_001136505|CCDC79|283847|coiled-coil domain containing 79##AY075019|CA7|766|carbonic anhydrase VII##NM_005182|CA7|766|carbonic anhydrase VII##BC033865|CA7|766|carbonic anhydrase VII##DQ895264|CA7|766|carbonic anhydrase VII##EU176243|CA7|766|carbonic anhydrase VII##AY075020|CA7|766|carbonic anhydrase VII##NM_001014435|CA7|766|carbonic anhydrase VII##AK292539|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##NM_020786|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##AB037769|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2##BC028030|PDP2|57546|pyruvate dehyrogenase phosphatase catalytic subunit 2	0.993735	0.0	denovo_WM_7:-45:0.905
chr19	13738419	13738548	reg1013840.p1	4.015	+	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	-121307	-	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	-474303	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-477191	+	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	104096	+	TSC_hg19_v1_chr19_+_13858736 AK098262 AF250306 BC002905 NM_030818	120236	+	TSC_hg19_v1_chr19_+_13875323 NM_001031727 NM_032285	136837	+	AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##AK293927|CCDC130|81576|coiled-coil domain containing 130##AK098262|CCDC130|81576|coiled-coil domain containing 130##AF250306|CCDC130|81576|coiled-coil domain containing 130##BC002905|CCDC130|81576|coiled-coil domain containing 130##NM_030818|CCDC130|81576|coiled-coil domain containing 130##NM_001031727|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)##NM_032285|MRI1|84245|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	0.997719	0.0	
chr20	21090111	21090198	reg1017465.p2	4.015	+	DQ310704 BC171842 TSC_hg19_v1_chr20_-_20693287 NM_020343	-396926	-	TSC_hg19_v1_chr20_+_20348747 M93119 NM_002196	-741400	+	NM_001167816 AL117439	-1052834	+	NM_001163022 NM_001163023 NM_018474 TSC_hg19_v1_chr20_+_21106657 AF451990 BC039296 AK293567 AK293166 AK025476	16510	+	TSC_hg19_v1_chr20_+_21106722 BC105093 BC113370 AK295355 BC045826	16573	+	BC142960 TSC_hg19_v1_chr20_+_21283980 NM_012255 AK001573 AF064257 BC131775 AY382900 AK303312 AK314602 AL136841 AF152169 BC000315	193821	+	DQ310704|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##BC171842|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##NM_020343|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##M93119|INSM1|3642|insulinoma-associated 1##NM_002196|INSM1|3642|insulinoma-associated 1##NM_001167816|C20orf26|26074|chromosome 20 open reading frame 26##AL117439|C20orf26|26074|chromosome 20 open reading frame 26##NM_001163022|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163023|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_018474|PLK1S1|55857|polo-like kinase 1 substrate 1##AF451990|PLK1S1|55857|polo-like kinase 1 substrate 1##BC039296|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293567|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293166|PLK1S1|55857|polo-like kinase 1 substrate 1##AK025476|PLK1S1|55857|polo-like kinase 1 substrate 1##BC105093|PLK1S1|55857|polo-like kinase 1 substrate 1##BC113370|PLK1S1|55857|polo-like kinase 1 substrate 1##AK295355|PLK1S1|55857|polo-like kinase 1 substrate 1##BC045826|PLK1S1|55857|polo-like kinase 1 substrate 1##BC142960|XRN2|22803|5'-3' exoribonuclease 2##NM_012255|XRN2|22803|5'-3' exoribonuclease 2##AK001573|XRN2|22803|5'-3' exoribonuclease 2##AF064257|XRN2|22803|5'-3' exoribonuclease 2##BC131775|XRN2|22803|5'-3' exoribonuclease 2##AY382900|XRN2|22803|5'-3' exoribonuclease 2##AK303312|XRN2|22803|5'-3' exoribonuclease 2##AK314602|XRN2|22803|5'-3' exoribonuclease 2##AL136841|XRN2|22803|5'-3' exoribonuclease 2##AF152169|XRN2|22803|5'-3' exoribonuclease 2##BC000315|XRN2|22803|5'-3' exoribonuclease 2	0.0	0.0	
chr3	194393461	194393535	reg1012631.p2	4.015	+	NM_018385	-293	-	AK002163 TSC_hg19_v1_chr3_-_194392942	-547	-	TSC_hg19_v1_chr3_-_194392921 BC068500	-581	-	TSC_hg19_v1_chr3_+_194406619 NM_153690	13125	+	BC039689 AK074503 CU691744 TSC_hg19_v1_chr3_+_194407588	14005	+	TSC_hg19_v1_chr3_-_194991889 BC019036 AK075551 BC039067 NM_152531	598352	-	NM_018385|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##AK002163|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##BC068500|LSG1|55341|large subunit GTPase 1 homolog (S. cerevisiae)##NM_153690|FAM43A|131583|family with sequence similarity 43, member A##BC039689|FAM43A|131583|family with sequence similarity 43, member A##AK074503|FAM43A|131583|family with sequence similarity 43, member A##BC019036|XXYLT1|152002|xyloside xylosyltransferase 1##AK075551|XXYLT1|152002|xyloside xylosyltransferase 1##BC039067|XXYLT1|152002|xyloside xylosyltransferase 1##NM_152531|XXYLT1|152002|xyloside xylosyltransferase 1	0.893755	0.0	denovo_WM_7:55:0.389	denovo_WM_7:56:0.312
chr4	11568110	11568182	reg1017073.p2	4.015	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-137614	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-881745	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-1109136	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	1917805	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	1917829	-	AB463932 AF009801 EU446467 BC111966 NM_001189	1977929	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	0.0	0.0	
chr5	106812626	106812759	reg1004399.p1	4.015	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3914211	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4218235	+	BC024591 NM_015216 AB463068	-4347418	+	AK308672 NM_001962 U26403	193898	-	TSC_hg19_v1_chr5_-_107717106 AK126722	904438	-	BC063316 NM_001163315	905106	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.0	0.0	
chr7	140510986	140511127	reg1014391.p2	4.015	+	TSC_hg19_v1_chr7_+_140396507 AF067166 NM_004546 AF050639 BC063026 BC001168 CR542121	-114553	+	TSC_hg19_v1_chr7_+_140372910 AF131745 AY302592 NM_052853 BC014107	-138118	+	AB033103 TSC_hg19_v1_chr7_-_140340614	-170446	-	TSC_hg19_v1_chr7_-_140624512 AB529216 AK314346 BC101757 BC112079 M95712 NM_004333	113451	-	AF151897 AK024776 NM_016071	203411	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	203694	-	AF067166|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##NM_004546|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF050639|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC063026|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##BC001168|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##CR542121|NDUFB2|4708|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa##AF131745|ADCK2|90956|aarF domain containing kinase 2##AY302592|ADCK2|90956|aarF domain containing kinase 2##NM_052853|ADCK2|90956|aarF domain containing kinase 2##BC014107|ADCK2|90956|aarF domain containing kinase 2##AB033103|DENND2A|27147|DENN/MADD domain containing 2A##AK314346|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC101757|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##BC112079|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##M95712|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##NM_004333|BRAF|673|v-raf murine sarcoma viral oncogene homolog B1##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33	0.0	0.992084	CTCF.p2:6:0.992
chr8	10982175	10982355	reg1012459.p1	4.015	+	TSC_hg19_v1_chr8_-_10697386 AF205718 AF418553 AJ344104	-284856	-	AY238941 AY523566 BC093762 BC143382 NM_017884 TSC_hg19_v1_chr8_-_10697379 AY029161 AK313715 BC015479 AK296724	-284931	-	AJ409320 BT006693 CU687196 AB464717 BC071947 BC004299 AK055556 AK223574 NM_031439 TSC_hg19_v1_chr8_-_10588025	-394281	-	AJ301560 TSC_hg19_v1_chr8_-_11058857 AY534244 NM_173683	76600	-	TSC_hg19_v1_chr8_+_11141999 BC034990 NM_015458	159747	+	TSC_hg19_v1_chr8_+_11142324 AJ297823 AK000444 AK223525 AK303543 BX538176 BC093788 BC101623 BC022003 AB528741 DQ893969 EU176196	160090	+	AF205718|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AF418553|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ344104|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY238941|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AY523566|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC093762|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC143382|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##NM_017884|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AK313715|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##BC015479|PINX1|54984|PIN2/TERF1 interacting, telomerase inhibitor 1##AJ409320|SOX7|83595|SRY (sex determining region Y)-box 7##BT006693|SOX7|83595|SRY (sex determining region Y)-box 7##BC071947|SOX7|83595|SRY (sex determining region Y)-box 7##BC004299|SOX7|83595|SRY (sex determining region Y)-box 7##AK055556|SOX7|83595|SRY (sex determining region Y)-box 7##AK223574|SOX7|83595|SRY (sex determining region Y)-box 7##NM_031439|SOX7|83595|SRY (sex determining region Y)-box 7##AJ301560|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##AY534244|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##NM_173683|XKR6|286046|XK, Kell blood group complex subunit-related family, member 6##BC034990|MTMR9|66036|myotubularin related protein 9##NM_015458|MTMR9|66036|myotubularin related protein 9##AJ297823|MTMR9|66036|myotubularin related protein 9##AK000444|MTMR9|66036|myotubularin related protein 9##AK223525|MTMR9|66036|myotubularin related protein 9##AK303543|MTMR9|66036|myotubularin related protein 9##BX538176|MTMR9|66036|myotubularin related protein 9##BC093788|MTMR9|66036|myotubularin related protein 9##BC101623|MTMR9|66036|myotubularin related protein 9##BC022003|MTMR9|66036|myotubularin related protein 9##DQ893969|MTMR9|66036|myotubularin related protein 9##EU176196|MTMR9|66036|myotubularin related protein 9	0.0	0.0	
chr10	70122483	70122615	reg1013210.p1	4.014	+	AK027673 BC009738 NM_001033083 NM_022129	-29884	-	NM_012207 NM_021644 AK223441 AK291547 TSC_hg19_v1_chr10_+_70091820 BC039824 AX810704 AK295316 AF132361	-30727	+	AK312275 AB528615 TSC_hg19_v1_chr10_-_70066624 AK092826 AX747753	-55935	-	TSC_hg19_v1_chr10_-_70167035 AK127019 NM_017987 BC062660 AY528716 BC041092 AK000925 AK294211 NM_001042417	44436	-	BC063664 TSC_hg19_v1_chr10_-_70231687 D42046 AK307939	109132	-	AK308333 NM_001080449 TSC_hg19_v1_chr10_-_70231752 BC111740	109254	-	AK027673|PBLD|64081|phenazine biosynthesis-like protein domain containing##BC009738|PBLD|64081|phenazine biosynthesis-like protein domain containing##NM_001033083|PBLD|64081|phenazine biosynthesis-like protein domain containing##NM_022129|PBLD|64081|phenazine biosynthesis-like protein domain containing##NM_012207|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##NM_021644|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK223441|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK291547|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##BC039824|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK295316|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AF132361|HNRNPH3|3189|heterogeneous nuclear ribonucleoprotein H3 (2H9)##AK312275|PBLD|64081|phenazine biosynthesis-like protein domain containing##AK092826|PBLD|64081|phenazine biosynthesis-like protein domain containing##AK127019|RUFY2|55680|RUN and FYVE domain containing 2##NM_017987|RUFY2|55680|RUN and FYVE domain containing 2##BC062660|RUFY2|55680|RUN and FYVE domain containing 2##AY528716|RUFY2|55680|RUN and FYVE domain containing 2##BC041092|RUFY2|55680|RUN and FYVE domain containing 2##AK294211|RUFY2|55680|RUN and FYVE domain containing 2##NM_001042417|RUFY2|55680|RUN and FYVE domain containing 2##BC063664|DNA2|1763|DNA replication helicase 2 homolog (yeast)##D42046|DNA2|1763|DNA replication helicase 2 homolog (yeast)##AK307939|DNA2|1763|DNA replication helicase 2 homolog (yeast)##AK308333|DNA2|1763|DNA replication helicase 2 homolog (yeast)##NM_001080449|DNA2|1763|DNA replication helicase 2 homolog (yeast)##BC111740|DNA2|1763|DNA replication helicase 2 homolog (yeast)	0.983262	0.0	denovo_WM_7:-2:0.372	denovo_WM_7:-3:0.447
chr18	76917165	76917284	reg1001413.p2	4.014	+	TSC_hg19_v1_chr18_+_76856487 CU690988	-60725	+	TSC_hg19_v1_chr18_+_76829420 BC053561	-87775	+	BC036473 TSC_hg19_v1_chr18_+_76829395 AK308291 BC022535 BC125219 BC125220 NM_198531 AK093704 AX748269 AK295981	-87825	+	TSC_hg19_v1_chr18_+_77155750 NM_006162 NM_172388 NM_172390 U80917	238589	+	TSC_hg19_v1_chr18_+_77155929 AK292641	238709	+	U80919 TSC_hg19_v1_chr18_+_77155946	238722	+	BC053561|ATP9B|374868|ATPase, class II, type 9B##BC036473|ATP9B|374868|ATPase, class II, type 9B##AK308291|ATP9B|374868|ATPase, class II, type 9B##BC022535|ATP9B|374868|ATPase, class II, type 9B##BC125219|ATP9B|374868|ATPase, class II, type 9B##BC125220|ATP9B|374868|ATPase, class II, type 9B##NM_198531|ATP9B|374868|ATPase, class II, type 9B##AK093704|ATP9B|374868|ATPase, class II, type 9B##AK295981|ATP9B|374868|ATPase, class II, type 9B##NM_006162|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172388|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##NM_172390|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80917|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##AK292641|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1##U80919|NFATC1|4772|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	0.0	0.0	
chr2	101888918	101889041	reg1009903.p1	4.014	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	-19587	+	TSC_hg19_v1_chr2_+_101869347 NM_017546	-19642	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	-121196	-	AM392566 AB463234 TSC_hg19_v1_chr2_-_101925153 BC019355 BC032328 AK074985 AK075141 AY450390 BC045743 AK129799 NM_173647	36163	-	TSC_hg19_v1_chr2_-_102003859 AK094970	114884	-	TSC_hg19_v1_chr2_-_102003966 BC032949 BC047514 NM_153836 AB046109	115010	-	AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AM392566|RNF149|284996|ring finger protein 149##BC019355|RNF149|284996|ring finger protein 149##BC032328|RNF149|284996|ring finger protein 149##AK074985|RNF149|284996|ring finger protein 149##AK075141|RNF149|284996|ring finger protein 149##AY450390|RNF149|284996|ring finger protein 149##BC045743|RNF149|284996|ring finger protein 149##AK129799|RNF149|284996|ring finger protein 149##NM_173647|RNF149|284996|ring finger protein 149##AK094970|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC032949|CREG2|200407|cellular repressor of E1A-stimulated genes 2##BC047514|CREG2|200407|cellular repressor of E1A-stimulated genes 2##NM_153836|CREG2|200407|cellular repressor of E1A-stimulated genes 2##AB046109|CREG2|200407|cellular repressor of E1A-stimulated genes 2	0.0	0.0	
chr4	143942675	143942779	reg1013498.p1	4.014	+	NM_001101669 NM_003866	-175124	-	AK290619 NM_000585 NM_172175 BC018149 U14407	-1384961	+	TSC_hg19_v1_chr4_+_142142087 AK294089 AK223609 AK002106 AJ006591	-1800641	+	TSC_hg19_v1_chr4_+_144106069 BC039115 NM_032557	163337	+	TSC_hg19_v1_chr4_+_144106101 AL833976 AK126943 BC068975	163398	+	NM_002039 NM_207123 AK289767 BC064848	315288	+	NM_001101669|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##NM_003866|INPP4B|8821|inositol polyphosphate-4-phosphatase, type II, 105kDa##AK290619|IL15|3600|interleukin 15##NM_000585|IL15|3600|interleukin 15##NM_172175|IL15|3600|interleukin 15##BC018149|IL15|3600|interleukin 15##U14407|IL15|3600|interleukin 15##AK294089|ZNF330|27309|zinc finger protein 330##AK223609|ZNF330|27309|zinc finger protein 330##AK002106|ZNF330|27309|zinc finger protein 330##AJ006591|ZNF330|27309|zinc finger protein 330##BC039115|USP38|84640|ubiquitin specific peptidase 38##NM_032557|USP38|84640|ubiquitin specific peptidase 38##AL833976|USP38|84640|ubiquitin specific peptidase 38##AK126943|USP38|84640|ubiquitin specific peptidase 38##BC068975|USP38|84640|ubiquitin specific peptidase 38##NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1	0.0	0.0	
chr4	99850024	99850204	reg1000127.p1	4.014	+	TSC_hg19_v1_chr4_-_99579781 BC009704 AF065389 AK315723 NM_005723	-270355	-	TSC_hg19_v1_chr4_+_99182534 NM_001100426 NM_001100427 NM_001100428 NM_001100429 NM_001100430 NM_021159 AK295156 AK055032 BC001816 BC001851 BC098269 BC098334 BC099708 BC099845	-667520	+	CU691442 BC036870 NM_174952	-785769	-	AK300982 NM_001130678 AB528981 DQ890728 DQ893903 TSC_hg19_v1_chr4_-_99850278 BC012611 BC107715 AK295083	146	-	M15353 TSC_hg19_v1_chr4_-_99850288	177	-	NM_001130679 NM_001968 BC035166	1672	-	BC009704|TSPAN5|10098|tetraspanin 5##AF065389|TSPAN5|10098|tetraspanin 5##AK315723|TSPAN5|10098|tetraspanin 5##NM_005723|TSPAN5|10098|tetraspanin 5##NM_001100426|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100427|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100428|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100429|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_001100430|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##NM_021159|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK295156|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##AK055032|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001816|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC001851|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098269|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC098334|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099708|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC099845|RAP1GDS1|5910|RAP1, GTP-GDP dissociation stimulator 1##BC036870|C4orf37|285555|chromosome 4 open reading frame 37##NM_174952|C4orf37|285555|chromosome 4 open reading frame 37##AK300982|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130678|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ890728|EIF4E|1977|eukaryotic translation initiation factor 4E##DQ893903|EIF4E|1977|eukaryotic translation initiation factor 4E##BC012611|EIF4E|1977|eukaryotic translation initiation factor 4E##BC107715|EIF4E|1977|eukaryotic translation initiation factor 4E##M15353|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001130679|EIF4E|1977|eukaryotic translation initiation factor 4E##NM_001968|EIF4E|1977|eukaryotic translation initiation factor 4E##BC035166|EIF4E|1977|eukaryotic translation initiation factor 4E	0.0	0.0	
chr5	126938963	126939106	reg1013908.p2	4.014	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-79840	+	NM_130809 TSC_hg19_v1_chr5_+_126853331 AL831963 AL832056 AL832600 AJ427339 AJ441110 AJ496322 AJ515158 AJ515428 AJ515429 AK057437 BC017066	-85683	+	NM_032446 CR749437 AK307919 BC020198 AB058676 BC152478	-312500	+	NM_001048252 AB219764	45689	+	NM_001127385 AB219832 BC071790	49691	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	479729	-	AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##NM_130809|PRRC1|133619|proline-rich coiled-coil 1##AL831963|PRRC1|133619|proline-rich coiled-coil 1##AL832056|PRRC1|133619|proline-rich coiled-coil 1##AL832600|PRRC1|133619|proline-rich coiled-coil 1##AJ427339|PRRC1|133619|proline-rich coiled-coil 1##AJ441110|PRRC1|133619|proline-rich coiled-coil 1##AJ496322|PRRC1|133619|proline-rich coiled-coil 1##AJ515158|PRRC1|133619|proline-rich coiled-coil 1##AJ515428|PRRC1|133619|proline-rich coiled-coil 1##AJ515429|PRRC1|133619|proline-rich coiled-coil 1##AK057437|PRRC1|133619|proline-rich coiled-coil 1##BC017066|PRRC1|133619|proline-rich coiled-coil 1##NM_032446|MEGF10|84466|multiple EGF-like-domains 10##CR749437|MEGF10|84466|multiple EGF-like-domains 10##AK307919|MEGF10|84466|multiple EGF-like-domains 10##BC020198|MEGF10|84466|multiple EGF-like-domains 10##AB058676|MEGF10|84466|multiple EGF-like-domains 10##BC152478|MEGF10|84466|multiple EGF-like-domains 10##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873	0.993348	0.0	denovo_WM_7:-27:0.993
chr8	94973315	94973420	reg1015785.p2	4.014	+	NM_001161778 AB590483 TSC_hg19_v1_chr8_+_94930074 AK302651	-43332	+	NM_018444 TSC_hg19_v1_chr8_+_94929171 BC047619 NM_001161780 AK057079 NM_001161779 BC064978 AF155661 NM_001161781	-44187	+	AK308071 NM_001142301 NM_153704 AK092244 AX747428 TSC_hg19_v1_chr8_+_94767121 AK308735 BX648768 BC031220 BC017974 BC054338 AK094935 BC032835	-206253	+	U07969 BC112013 BC113464 TSC_hg19_v1_chr8_-_95220784 X83228 AK301001 NM_004063	247427	-	AK312873 NM_001144663	256163	-	U10550 TSC_hg19_v1_chr8_-_95274525	301155	-	NM_001161778|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK302651|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_018444|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC047619|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161780|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK057079|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161779|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##BC064978|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AF155661|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##NM_001161781|PDP1|54704|pyruvate dehyrogenase phosphatase catalytic subunit 1##AK308071|TMEM67|91147|transmembrane protein 67##NM_001142301|TMEM67|91147|transmembrane protein 67##NM_153704|TMEM67|91147|transmembrane protein 67##AK092244|TMEM67|91147|transmembrane protein 67##AK308735|TMEM67|91147|transmembrane protein 67##BX648768|TMEM67|91147|transmembrane protein 67##BC031220|TMEM67|91147|transmembrane protein 67##BC017974|TMEM67|91147|transmembrane protein 67##BC054338|TMEM67|91147|transmembrane protein 67##AK094935|TMEM67|91147|transmembrane protein 67##BC032835|TMEM67|91147|transmembrane protein 67##U07969|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC112013|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##BC113464|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##X83228|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK301001|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_004063|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AK312873|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_001144663|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##U10550|GEM|2669|GTP binding protein overexpressed in skeletal muscle	0.0	0.0	
chrX	123610715	123610895	reg1010770.p2	4.014	+	NM_001114937 NM_002351 AL023657 AK311645	-130630	+	AK026678 TSC_hg19_v1_chrX_+_123234596	-376275	+	TSC_hg19_v1_chrX_+_123095638 BC001765	-515168	+	HE578281 BC140783 BC144542 BC144543 AF100772 NM_001163278 NM_001163279 NM_014253	486828	-	NM_001195272	843163	+	BC136673 BC136674 NM_001013628	1689274	-	NM_001114937|SH2D1A|4068|SH2 domain containing 1A##NM_002351|SH2D1A|4068|SH2 domain containing 1A##AL023657|SH2D1A|4068|SH2 domain containing 1A##AK311645|SH2D1A|4068|SH2 domain containing 1A##AK026678|STAG2|10735|stromal antigen 2##BC001765|STAG2|10735|stromal antigen 2##BC140783|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##BC144542|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##BC144543|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##AF100772|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001163278|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001163279|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_014253|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001195272|LOC100129520|100129520|testis expressed sequence 13-like##BC136673|DCAF12L2|340578|DDB1 and CUL4 associated factor 12-like 2##BC136674|DCAF12L2|340578|DDB1 and CUL4 associated factor 12-like 2##NM_001013628|DCAF12L2|340578|DDB1 and CUL4 associated factor 12-like 2	0.0	0.0	
chr11	82884629	82884809	reg1014617.p2	4.013	+	NM_015885 TSC_hg19_v1_chr11_+_82868196 AK302606 AF046935 AK025103 AB020631 BC146778 BC110432 BC065384	-16314	+	BC031316 TSC_hg19_v1_chr11_+_82783118	-101601	+	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	-101822	-	AK311356 TSC_hg19_v1_chr11_-_82904700	19983	-	TSC_hg19_v1_chr11_+_82904780 DQ508934 BC045621 AK310765 EF041819	20115	+	BX648690 NM_182603 DQ508815 AK095193 BC171752	20769	+	NM_015885|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK302606|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AF046935|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK025103|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AB020631|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC146778|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC110432|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC065384|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC031316|LOC100506233|100506233|uncharacterized LOC100506233##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##AK311356|DKFZp547G183|55525|uncharacterized LOC55525##DQ508934|ANKRD42|338699|ankyrin repeat domain 42##BC045621|ANKRD42|338699|ankyrin repeat domain 42##AK310765|ANKRD42|338699|ankyrin repeat domain 42##EF041819|ANKRD42|338699|ankyrin repeat domain 42##BX648690|ANKRD42|338699|ankyrin repeat domain 42##NM_182603|ANKRD42|338699|ankyrin repeat domain 42##DQ508815|ANKRD42|338699|ankyrin repeat domain 42##AK095193|ANKRD42|338699|ankyrin repeat domain 42##BC171752|ANKRD42|338699|ankyrin repeat domain 42	1.979439	0.0	denovo_WM_7:45:0.452	denovo_WM_7:48:0.411	denovo_WM_7:63:0.571
chr2	127796962	127797059	reg1011586.p1	4.013	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	-383218	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	-383303	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-3014146	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	67731	-	BC039307 NM_001001665	166332	-	AK131190 TSC_hg19_v1_chr2_-_127977781	180707	-	BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1##BC039307|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##NM_001001665|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##AK131190|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1	0.927071	0.0	denovo_WM_7:-16:0.214	denovo_WM_7:-17:0.415	denovo_WM_7:-18:0.298
chr22	42343277	42343391	reg1015531.p2	4.013	+	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	-211	-	EU035297 NM_001110215	-7112	-	AB590047 AF373846 AX772914 AX800072 BC105123 NM_052945 BC112030	-20535	-	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	29574	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	51441	+	AB528190 CU013127 CU013415 DQ891874 DQ895062 CR456527 M38083 BC000095 TSC_hg19_v1_chr22_-_42466570	123101	-	CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##EU035297|CENPM|79019|centromere protein M##NM_001110215|CENPM|79019|centromere protein M##AF373846|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX772914|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##AX800072|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC105123|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_052945|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##BC112030|TNFRSF13C|115650|tumor necrosis factor receptor superfamily, member 13C##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like##CU013127|NAGA|4668|N-acetylgalactosaminidase, alpha-##CU013415|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ891874|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ895062|NAGA|4668|N-acetylgalactosaminidase, alpha-##CR456527|NAGA|4668|N-acetylgalactosaminidase, alpha-##M38083|NAGA|4668|N-acetylgalactosaminidase, alpha-##BC000095|NAGA|4668|N-acetylgalactosaminidase, alpha-	0.998858	0.0	denovo_WM_7:45:0.314	denovo_WM_7:46:0.314	denovo_WM_7:47:0.314
chr2	52304176	52304259	reg1010691.p1	4.013	+	EF539882 AK124726 NM_001135659 NM_004801	-1044613	-	TSC_hg19_v1_chr2_-_51259258 BC046631	-1044959	-	AF064842 NM_138735 TSC_hg19_v1_chr2_-_50574946	-1729295	-	BC019239 BC025376 NM_001008708 BC053896 BC017941 AK097260	1690739	+	AK056069 NM_001201965 BC009569 AB209795 TSC_hg19_v1_chr2_-_54014091 AK000985 AK303133 AK001283 NM_016115 NM_145863	1709861	-	NM_001127397 NM_001127398 NM_015701 TSC_hg19_v1_chr2_+_54014180 AY358717 AK001913 AY453410 BC013129 BC022228 AK315477 DQ894762	1709990	+	EF539882|NRXN1|9378|neurexin 1##AK124726|NRXN1|9378|neurexin 1##NM_001135659|NRXN1|9378|neurexin 1##NM_004801|NRXN1|9378|neurexin 1##BC046631|NRXN1|9378|neurexin 1##AF064842|NRXN1|9378|neurexin 1##NM_138735|NRXN1|9378|neurexin 1##BC019239|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##BC025376|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##NM_001008708|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##BC053896|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##BC017941|CHAC2|494143|ChaC, cation transport regulator homolog 2 (E. coli)##AK056069|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_001201965|ASB3|51130|ankyrin repeat and SOCS box containing 3##BC009569|ASB3|51130|ankyrin repeat and SOCS box containing 3##AB209795|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK000985|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK303133|ASB3|51130|ankyrin repeat and SOCS box containing 3##AK001283|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_016115|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_145863|ASB3|51130|ankyrin repeat and SOCS box containing 3##NM_001127397|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_001127398|ERLEC1|27248|endoplasmic reticulum lectin 1##NM_015701|ERLEC1|27248|endoplasmic reticulum lectin 1##AY358717|ERLEC1|27248|endoplasmic reticulum lectin 1##AK001913|ERLEC1|27248|endoplasmic reticulum lectin 1##AY453410|ERLEC1|27248|endoplasmic reticulum lectin 1##BC013129|ERLEC1|27248|endoplasmic reticulum lectin 1##BC022228|ERLEC1|27248|endoplasmic reticulum lectin 1##AK315477|ERLEC1|27248|endoplasmic reticulum lectin 1##DQ894762|ERLEC1|27248|endoplasmic reticulum lectin 1	0.999113	0.0	denovo_WM_7:-7:0.423	denovo_WM_7:-10:0.282
chr3	17943521	17943640	reg1013375.p1	4.013	+	TSC_hg19_v1_chr3_-_17784106 NM_001134380	-159413	-	D86965 NM_014744	-161182	-	AK310539 NM_001134381	-202069	-	TSC_hg19_v1_chr3_-_18466803 AK127242 NM_001195470 NM_002971	523217	-	BC001744 NM_001131010	536653	-	AK295633 AY053503 NM_144633 AB209053 AK309034	1246424	+	NM_001134380|TBC1D5|9779|TBC1 domain family, member 5##D86965|TBC1D5|9779|TBC1 domain family, member 5##NM_014744|TBC1D5|9779|TBC1 domain family, member 5##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5##AK127242|SATB1|6304|SATB homeobox 1##NM_001195470|SATB1|6304|SATB homeobox 1##NM_002971|SATB1|6304|SATB homeobox 1##BC001744|SATB1|6304|SATB homeobox 1##NM_001131010|SATB1|6304|SATB homeobox 1##AK295633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AY053503|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##NM_144633|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AB209053|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8##AK309034|KCNH8|131096|potassium voltage-gated channel, subfamily H (eag-related), member 8	0.0	0.0	
chr10	105734783	105734958	reg1013605.p1	4.012	+	AF273048 NM_014720 BC111565 BC008697	-7383	+	TSC_hg19_v1_chr10_+_105726941 BC047885 BC064804 BC047762 BC036736 D86959	-7906	+	TSC_hg19_v1_chr10_+_105726926 AK307389	-7984	+	AK300117 TSC_hg19_v1_chr10_-_105845560 M91669 AK300226 AK309940	110699	-	BC004478 D63465 TSC_hg19_v1_chr10_-_105845639 NM_000494	110759	-	NM_145247 BC140835 NM_001002759 BC043256 AK291184	147039	+	AF273048|SLK|9748|STE20-like kinase##NM_014720|SLK|9748|STE20-like kinase##BC111565|SLK|9748|STE20-like kinase##BC008697|SLK|9748|STE20-like kinase##BC047885|SLK|9748|STE20-like kinase##BC064804|SLK|9748|STE20-like kinase##BC047762|SLK|9748|STE20-like kinase##BC036736|SLK|9748|STE20-like kinase##D86959|SLK|9748|STE20-like kinase##AK307389|SLK|9748|STE20-like kinase##M91669|COL17A1|1308|collagen, type XVII, alpha 1##AK309940|COL17A1|1308|collagen, type XVII, alpha 1##BC004478|COL17A1|1308|collagen, type XVII, alpha 1##D63465|COL17A1|1308|collagen, type XVII, alpha 1##NM_000494|COL17A1|1308|collagen, type XVII, alpha 1##NM_145247|SFR1|119392|SWI5-dependent recombination repair 1##BC140835|SFR1|119392|SWI5-dependent recombination repair 1##NM_001002759|SFR1|119392|SWI5-dependent recombination repair 1##BC043256|SFR1|119392|SWI5-dependent recombination repair 1##AK291184|SFR1|119392|SWI5-dependent recombination repair 1	0.0	0.0	
chr14	53416313	53416493	reg1004812.p2	4.012	+	TSC_hg19_v1_chr14_-_53258376 NM_198066	-158018	-	TSC_hg19_v1_chr14_-_53258326 BC012179 AK090577	-158167	-	TSC_hg19_v1_chr14_+_53196923 BX647636 BC020265 BC146995 BC146998	-219446	+	TSC_hg19_v1_chr14_-_53417272 EU979385 CU675940 EU831994 EU832087	876	-	Z24725 AF443279 TSC_hg19_v1_chr14_-_53417769 BX161467 AK291738	1317	-	TSC_hg19_v1_chr14_-_53417903 BC017327 NM_001134999 NM_001135000 NM_006832	1464	-	NM_198066|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##BC012179|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##AK090577|GNPNAT1|64841|glucosamine-phosphate N-acetyltransferase 1##BX647636|STYX|6815|serine/threonine/tyrosine interacting protein##BC020265|STYX|6815|serine/threonine/tyrosine interacting protein##BC146995|STYX|6815|serine/threonine/tyrosine interacting protein##BC146998|STYX|6815|serine/threonine/tyrosine interacting protein##EU979385|FERMT2|10979|fermitin family member 2##EU831994|FERMT2|10979|fermitin family member 2##EU832087|FERMT2|10979|fermitin family member 2##Z24725|FERMT2|10979|fermitin family member 2##AF443279|FERMT2|10979|fermitin family member 2##BX161467|FERMT2|10979|fermitin family member 2##AK291738|FERMT2|10979|fermitin family member 2##BC017327|FERMT2|10979|fermitin family member 2##NM_001134999|FERMT2|10979|fermitin family member 2##NM_001135000|FERMT2|10979|fermitin family member 2##NM_006832|FERMT2|10979|fermitin family member 2	0.0	0.0	
chr16	47076824	47076910	reg1011629.p2	4.012	+	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	-69272	-	CU677459 AF011793 AJ001309 TSC_hg19_v1_chr16_-_47007561	-69345	-	TSC_hg19_v1_chr16_-_47005340 Y13350	-71519	-	AY358718 BC108727 TSC_hg19_v1_chr16_-_47177852 BC098380	100979	-	TSC_hg19_v1_chr16_-_47177902 AK074937 NM_001201477 NM_018092	101055	-	TSC_hg19_v1_chr16_-_47494975 BC006321 DQ893514 DQ896493 AF503339 AK027596	417998	-	AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AJ001309|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##Y13350|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AY358718|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC108727|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC098380|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AK074937|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_001201477|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_018092|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC006321|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ893514|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ896493|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF503339|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK027596|ITFG1|81533|integrin alpha FG-GAP repeat containing 1	0.977932	0.0	denovo_WM_7:43:0.318	denovo_WM_7:44:0.318	denovo_WM_7:45:0.318
chr1	9352665	9352790	reg1000211.p3	4.012	+	CR749282 TSC_hg19_v1_chr1_+_9299950	-52789	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	-57810	+	TSC_hg19_v1_chr1_+_9294832 BC081559	-57912	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	210	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	242	+	TSC_hg19_v1_chr1_+_9415945 CU677397	63219	+	CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1	0.0	0.0	
chr2	220185684	220185810	reg1008934.p1	4.012	+	TSC_hg19_v1_chr2_-_220174202 AK291469 NM_001199763 NM_002846	-11500	-	AK314574 TSC_hg19_v1_chr2_-_220174093 AK294490 BC070053 L18983	-11644	-	TSC_hg19_v1_chr2_-_220173693 AK296335 NM_001199764	-12037	-	AF437883 NM_001007089	12151	-	AK021871 AB463418 DQ891937 DQ895124 TSC_hg19_v1_chr2_-_220252539 BC000653	66787	-	TSC_hg19_v1_chr2_-_220252614 AK023005	66850	-	AK291469|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##NM_001199763|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##NM_002846|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##AK314574|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##AK294490|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##BC070053|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##L18983|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##AK296335|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##NM_001199764|PTPRN|5798|protein tyrosine phosphatase, receptor type, N##AF437883|RESP18|389075|regulated endocrine-specific protein 18 homolog (rat)##NM_001007089|RESP18|389075|regulated endocrine-specific protein 18 homolog (rat)##AK021871|DNPEP|23549|aspartyl aminopeptidase##DQ891937|DNPEP|23549|aspartyl aminopeptidase##DQ895124|DNPEP|23549|aspartyl aminopeptidase##BC000653|DNPEP|23549|aspartyl aminopeptidase##AK023005|DNPEP|23549|aspartyl aminopeptidase	0.998967	0.0	denovo_WM_7:-39:0.794
chr4	185276423	185276534	reg1007631.p2	4.012	+	BC035035 AY358676 AK057370 NM_153343	-137413	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-448567	+	TSC_hg19_v1_chr4_+_184827807 AK289840	-448658	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	119203	-	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	294123	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	294355	+	BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK289840|STOX2|56977|storkhead box 2##X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111	0.0	0.0	
chr4	77997005	77997118	reg1008722.p2	4.012	+	AK124592 CR627457 TSC_hg19_v1_chr4_+_77954068	-43056	+	TSC_hg19_v1_chr4_+_77871005 AK001711 AL110300 AK302700 BC063615 GU727629 AB587498	-126061	+	TSC_hg19_v1_chr4_+_77870908 BC064934	-126149	+	TSC_hg19_v1_chr4_-_77997145 BC000420 BC004975 NM_006835 AB209766 AK301111 AK312632	91	-	TSC_hg19_v1_chr4_+_78078359 NM_004354 AK292029 BC032518	81300	+	TSC_hg19_v1_chr4_+_78078398 U47414	81399	+	AK124592|SEPT11|55752|septin 11##AK001711|SEPT11|55752|septin 11##AL110300|SEPT11|55752|septin 11##AK302700|SEPT11|55752|septin 11##BC063615|SEPT11|55752|septin 11##GU727629|SEPT11|55752|septin 11##BC064934|SEPT11|55752|septin 11##BC000420|CCNI|10983|cyclin I##BC004975|CCNI|10983|cyclin I##NM_006835|CCNI|10983|cyclin I##AB209766|CCNI|10983|cyclin I##AK301111|CCNI|10983|cyclin I##AK312632|CCNI|10983|cyclin I##NM_004354|CCNG2|901|cyclin G2##AK292029|CCNG2|901|cyclin G2##BC032518|CCNG2|901|cyclin G2##U47414|CCNG2|901|cyclin G2	1.064934	0.0	denovo_WM_7:-9:0.399
chr6	30484438	30484585	reg1012861.p1	4.012	+	NM_005516 AK292391 TSC_hg19_v1_chr6_+_30457288 AK098434 AK225048 AK296822 AK298695 AK300906 AK301125 AK314411 AK316327 BC040479 BC002578 M20022 AB385554 DQ891891 DQ895077 AJ293263 AJ293264 AY216681 AY221103 BC004297 AB209870 M31183	-27252	+	TSC_hg19_v1_chr6_+_30312924 NM_001199120 NM_001199121 NM_024839 AF212152 AJ504714 AK026291 BC011730 AJ504713 AJ504715 AJ504716 CU680032	-171547	+	NM_001199119 AB587493 BT007370 CU675745 CU690008	-187421	+	TSC_hg19_v1_chr6_-_30523667 AK302480	39107	-	L25665 TSC_hg19_v1_chr6_-_30524034 BT006648 CU676240 DQ890763 DQ893926 DQ896096 BC013959 BC006343 AK026391 AK316391 AK298042 AK293596	39688	-	NM_001077497 NM_025263	39974	+	NM_005516|HLA-E|3133|major histocompatibility complex, class I, E##AK292391|HLA-E|3133|major histocompatibility complex, class I, E##AK098434|HLA-E|3133|major histocompatibility complex, class I, E##AK225048|HLA-E|3133|major histocompatibility complex, class I, E##AK296822|HLA-E|3133|major histocompatibility complex, class I, E##AK298695|HLA-E|3133|major histocompatibility complex, class I, E##AK300906|HLA-E|3133|major histocompatibility complex, class I, E##AK301125|HLA-E|3133|major histocompatibility complex, class I, E##AK314411|HLA-E|3133|major histocompatibility complex, class I, E##AK316327|HLA-E|3133|major histocompatibility complex, class I, E##BC040479|HLA-E|3133|major histocompatibility complex, class I, E##BC002578|HLA-E|3133|major histocompatibility complex, class I, E##M20022|HLA-E|3133|major histocompatibility complex, class I, E##DQ891891|HLA-E|3133|major histocompatibility complex, class I, E##DQ895077|HLA-E|3133|major histocompatibility complex, class I, E##AJ293263|HLA-E|3133|major histocompatibility complex, class I, E##AJ293264|HLA-E|3133|major histocompatibility complex, class I, E##AY216681|HLA-E|3133|major histocompatibility complex, class I, E##AY221103|HLA-E|3133|major histocompatibility complex, class I, E##BC004297|HLA-E|3133|major histocompatibility complex, class I, E##AB209870|HLA-E|3133|major histocompatibility complex, class I, E##M31183|HLA-E|3133|major histocompatibility complex, class I, E##NM_001199120|RPP21|79897|ribonuclease P/MRP 21kDa subunit##NM_001199121|RPP21|79897|ribonuclease P/MRP 21kDa subunit##NM_024839|RPP21|79897|ribonuclease P/MRP 21kDa subunit##AF212152|RPP21|79897|ribonuclease P/MRP 21kDa subunit##AJ504714|RPP21|79897|ribonuclease P/MRP 21kDa subunit##AK026291|RPP21|79897|ribonuclease P/MRP 21kDa subunit##BC011730|RPP21|79897|ribonuclease P/MRP 21kDa subunit##AJ504713|RPP21|79897|ribonuclease P/MRP 21kDa subunit##AJ504715|RPP21|79897|ribonuclease P/MRP 21kDa subunit##AJ504716|RPP21|79897|ribonuclease P/MRP 21kDa subunit##NM_001199119|TRIM39-RPP21|202658|TRIM39-RPP21 readthrough##BT007370|TRIM39|56658|tripartite motif containing 39##AK302480|GNL1|2794|guanine nucleotide binding protein-like 1##L25665|GNL1|2794|guanine nucleotide binding protein-like 1##BT006648|GNL1|2794|guanine nucleotide binding protein-like 1##DQ890763|GNL1|2794|guanine nucleotide binding protein-like 1##DQ893926|GNL1|2794|guanine nucleotide binding protein-like 1##DQ896096|GNL1|2794|guanine nucleotide binding protein-like 1##BC013959|GNL1|2794|guanine nucleotide binding protein-like 1##BC006343|GNL1|2794|guanine nucleotide binding protein-like 1##AK026391|GNL1|2794|guanine nucleotide binding protein-like 1##AK316391|GNL1|2794|guanine nucleotide binding protein-like 1##AK298042|GNL1|2794|guanine nucleotide binding protein-like 1##AK293596|GNL1|2794|guanine nucleotide binding protein-like 1##NM_001077497|PRR3|80742|proline rich 3##NM_025263|PRR3|80742|proline rich 3	0.992671	0.0	denovo_WM_7:32:0.823
chr8	61596573	61596678	reg1019048.p1	4.012	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	-5223	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	-5337	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-166875	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	603925	+	AF184241 AF306765 AF224469 BC144362 BC144363 AF224468 AK304314 AK295528 TSC_hg19_v1_chr8_-_62602371 NM_001164750 NM_001164751 NM_001164752 NM_001164753 NM_020164 NM_032467 NM_032468	1005721	-	CU688200 FJ461473 AF289489 S83325 EU718494 U03109 AK291836 TSC_hg19_v1_chr8_-_62627101 BC142967 BC066929	1030393	-	BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1##AF184241|ASPH|444|aspartate beta-hydroxylase##AF306765|ASPH|444|aspartate beta-hydroxylase##AF224469|ASPH|444|aspartate beta-hydroxylase##BC144362|ASPH|444|aspartate beta-hydroxylase##BC144363|ASPH|444|aspartate beta-hydroxylase##AF224468|ASPH|444|aspartate beta-hydroxylase##AK304314|ASPH|444|aspartate beta-hydroxylase##AK295528|ASPH|444|aspartate beta-hydroxylase##NM_001164750|ASPH|444|aspartate beta-hydroxylase##NM_001164751|ASPH|444|aspartate beta-hydroxylase##NM_001164752|ASPH|444|aspartate beta-hydroxylase##NM_001164753|ASPH|444|aspartate beta-hydroxylase##NM_020164|ASPH|444|aspartate beta-hydroxylase##NM_032467|ASPH|444|aspartate beta-hydroxylase##NM_032468|ASPH|444|aspartate beta-hydroxylase##FJ461473|ASPH|444|aspartate beta-hydroxylase##AF289489|ASPH|444|aspartate beta-hydroxylase##S83325|ASPH|444|aspartate beta-hydroxylase##EU718494|ASPH|444|aspartate beta-hydroxylase##U03109|ASPH|444|aspartate beta-hydroxylase##AK291836|ASPH|444|aspartate beta-hydroxylase##BC142967|ASPH|444|aspartate beta-hydroxylase##BC066929|ASPH|444|aspartate beta-hydroxylase	0.0	0.0	
chr17	38269625	38269782	reg1009714.p1	4.011	+	TSC_hg19_v1_chr17_-_38256983 M24898 NM_021724	-12729	-	M34339 X72631 TSC_hg19_v1_chr17_-_38256833 BC047875 AK315270 AK300155 BC056148	-12981	-	TSC_hg19_v1_chr17_-_38252967 AY429554	-16722	-	CR749360 TSC_hg19_v1_chr17_+_38278225	8519	+	NM_001012241 BC118997 BC122543	9124	+	EU831932 EU832027 TSC_hg19_v1_chr17_+_38279490	9776	+	M24898|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##NM_021724|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##M34339|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##X72631|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##BC047875|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##AK315270|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##AK300155|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##BC056148|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##AY429554|NR1D1|9572|nuclear receptor subfamily 1, group D, member 1##CR749360|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##NM_001012241|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##BC118997|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##BC122543|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##EU831932|MSL1|339287|male-specific lethal 1 homolog (Drosophila)##EU832027|MSL1|339287|male-specific lethal 1 homolog (Drosophila)	0.177069	0.0	
chr18	74212242	74212370	reg1013794.p2	4.011	+	D86975 NM_014643 TSC_hg19_v1_chr18_-_74207166	-5151	-	BC108287 TSC_hg19_v1_chr18_-_74092260	-120056	-	BC105945 BC107486 NM_001037331 BC037871 AK093452 AX748136	-1072684	-	TSC_hg19_v1_chr18_-_74534239 BC032908	321933	-	TSC_hg19_v1_chr18_+_74534512 BX648028	322204	+	AF085243 AF085244 NM_007345	323809	+	D86975|ZNF516|9658|zinc finger protein 516##NM_014643|ZNF516|9658|zinc finger protein 516##BC108287|ZNF516|9658|zinc finger protein 516##BC105945|C18orf62|284274|chromosome 18 open reading frame 62##BC107486|C18orf62|284274|chromosome 18 open reading frame 62##NM_001037331|C18orf62|284274|chromosome 18 open reading frame 62##BC037871|C18orf62|284274|chromosome 18 open reading frame 62##AK093452|C18orf62|284274|chromosome 18 open reading frame 62##BC032908|LOC100131655|100131655|uncharacterized LOC100131655##BX648028|ZNF236|7776|zinc finger protein 236##AF085243|ZNF236|7776|zinc finger protein 236##AF085244|ZNF236|7776|zinc finger protein 236##NM_007345|ZNF236|7776|zinc finger protein 236	0.992509	0.0	
chr19	7288887	7288991	reg1012571.p1	4.011	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-189388	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-219224	+	AK315405 NM_001044387 NM_001044388 NM_024341	-219477	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	5021	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	171068	+	TSC_hg19_v1_chr19_+_7460061 AB011093	171138	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.999374	0.0	
chr21	46369856	46370036	reg1015841.p2	4.011	+	TSC_hg19_v1_chr21_+_46359968 CU679303	-9977	+	TSC_hg19_v1_chr21_+_46359920 AF391113 AF391114 BC009341 NM_058190	-10021	+	BC128244 BC128245 AF380178 AY040088 TSC_hg19_v1_chr21_-_46359834 AK127059	-10183	-	TSC_hg19_v1_chr21_+_46494502 AY082339 BC030663 NM_001112 NM_001160230 NM_015833 NM_015834 AB194369 AB194370 AB194371 AB194372 AB194373 AF525422 AF533142 AY135659 U76420 U76421 U76422 BC065545 U82120	124637	+	TSC_hg19_v1_chr21_+_46572480 FJ169506	202552	+	TSC_hg19_v1_chr21_-_46707808 BC064623 AJ575591 AL110285 AB023175 AJ302079 AJ302080 AY066015 AK294966 AK290732 AK298080 NM_015227 NM_133635	337855	-	AF391113|FAM207A|85395|family with sequence similarity 207, member A##AF391114|FAM207A|85395|family with sequence similarity 207, member A##BC009341|FAM207A|85395|family with sequence similarity 207, member A##NM_058190|FAM207A|85395|family with sequence similarity 207, member A##BC128244|C21orf67|84536|chromosome 21 open reading frame 67##BC128245|C21orf67|84536|chromosome 21 open reading frame 67##AF380178|C21orf67|84536|chromosome 21 open reading frame 67##AY040088|C21orf67|84536|chromosome 21 open reading frame 67##AY082339|ADARB1|104|adenosine deaminase, RNA-specific, B1##BC030663|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_001112|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_001160230|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_015833|ADARB1|104|adenosine deaminase, RNA-specific, B1##NM_015834|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194369|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194370|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194371|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194372|ADARB1|104|adenosine deaminase, RNA-specific, B1##AB194373|ADARB1|104|adenosine deaminase, RNA-specific, B1##AF525422|ADARB1|104|adenosine deaminase, RNA-specific, B1##AF533142|ADARB1|104|adenosine deaminase, RNA-specific, B1##AY135659|ADARB1|104|adenosine deaminase, RNA-specific, B1##U76420|ADARB1|104|adenosine deaminase, RNA-specific, B1##U76421|ADARB1|104|adenosine deaminase, RNA-specific, B1##U76422|ADARB1|104|adenosine deaminase, RNA-specific, B1##BC065545|ADARB1|104|adenosine deaminase, RNA-specific, B1##U82120|ADARB1|104|adenosine deaminase, RNA-specific, B1##FJ169506|ADARB1|104|adenosine deaminase, RNA-specific, B1##BC064623|POFUT2|23275|protein O-fucosyltransferase 2##AJ575591|POFUT2|23275|protein O-fucosyltransferase 2##AL110285|POFUT2|23275|protein O-fucosyltransferase 2##AB023175|POFUT2|23275|protein O-fucosyltransferase 2##AJ302079|POFUT2|23275|protein O-fucosyltransferase 2##AJ302080|POFUT2|23275|protein O-fucosyltransferase 2##AY066015|POFUT2|23275|protein O-fucosyltransferase 2##AK294966|POFUT2|23275|protein O-fucosyltransferase 2##AK290732|POFUT2|23275|protein O-fucosyltransferase 2##AK298080|POFUT2|23275|protein O-fucosyltransferase 2##NM_015227|POFUT2|23275|protein O-fucosyltransferase 2##NM_133635|POFUT2|23275|protein O-fucosyltransferase 2	0.997948	0.999673	denovo_WM_7:77:0.881	CTCF.p2:-92:1.000
chr2	208395634	208395728	reg1013078.p1	4.011	+	AY347527 TSC_hg19_v1_chr2_+_208394824 AK315226	-856	+	TSC_hg19_v1_chr2_+_208394772 BC010636 AK298740	-900	+	TSC_hg19_v1_chr2_+_208394709 X55545 M27691	-960	+	AK093812 AX748320 BC033720 NM_145280	94014	-	NM_001127395 TSC_hg19_v1_chr2_-_208489987	94308	-	TSC_hg19_v1_chr2_-_208490039 BC009462 AF455817	94402	-	AY347527|CREB1|1385|cAMP responsive element binding protein 1##AK315226|CREB1|1385|cAMP responsive element binding protein 1##BC010636|CREB1|1385|cAMP responsive element binding protein 1##AK298740|CREB1|1385|cAMP responsive element binding protein 1##X55545|CREB1|1385|cAMP responsive element binding protein 1##M27691|CREB1|1385|cAMP responsive element binding protein 1##AK093812|METTL21A|151194|methyltransferase like 21A##BC033720|METTL21A|151194|methyltransferase like 21A##NM_145280|METTL21A|151194|methyltransferase like 21A##NM_001127395|METTL21A|151194|methyltransferase like 21A##BC009462|METTL21A|151194|methyltransferase like 21A##AF455817|METTL21A|151194|methyltransferase like 21A	0.999267	0.0	denovo_WM_7:21:0.739
chr8	141601599	141601675	reg1012355.p1	4.011	+	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-80074	+	TSC_hg19_v1_chr8_+_141521394 NM_017444 AK023537	-80245	+	AK128755 NM_031466	-132960	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	43987	-	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	409619	-	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	537100	+	AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_017444|CHRAC1|54108|chromatin accessibility complex 1##AK023537|CHRAC1|54108|chromatin accessibility complex 1##AK128755|TRAPPC9|83696|trafficking protein particle complex 9##NM_031466|TRAPPC9|83696|trafficking protein particle complex 9##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3	0.0	0.0	
chr11	1873707	1873887	reg1000292.p1	4.010	+	NM_001145841	-12366	+	BC032148 NM_001145829	-13079	+	NM_003282	-13565	+	NM_002339 TSC_hg19_v1_chr11_+_1874296 AK222733 BC001785 X55188 AK290279 S67783 CR541728 CR541754 CU674886	489	+	AK092071 AX747343 NM_001242932	12597	+	NM_001013253	16105	+	NM_001145841|TNNI2|7136|troponin I type 2 (skeletal, fast)##BC032148|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_001145829|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_003282|TNNI2|7136|troponin I type 2 (skeletal, fast)##NM_002339|LSP1|4046|lymphocyte-specific protein 1##AK222733|LSP1|4046|lymphocyte-specific protein 1##BC001785|LSP1|4046|lymphocyte-specific protein 1##X55188|LSP1|4046|lymphocyte-specific protein 1##AK290279|LSP1|4046|lymphocyte-specific protein 1##S67783|LSP1|4046|lymphocyte-specific protein 1##CR541728|LSP1|4046|lymphocyte-specific protein 1##CR541754|LSP1|4046|lymphocyte-specific protein 1##AK092071|LSP1|4046|lymphocyte-specific protein 1##NM_001242932|LSP1|4046|lymphocyte-specific protein 1##NM_001013253|LSP1|4046|lymphocyte-specific protein 1	0.0	0.0	
chr11	43704094	43704200	reg1015161.p2	4.010	+	NM_016142 TSC_hg19_v1_chr11_+_43702287 AK027882 AK075011 AK292625 AK075216 AK074952 AF078850 BC012043 AK222881 AK301663 BC012536 EU176708	-1889	+	TSC_hg19_v1_chr11_+_43665785 AK095484	-38363	+	TSC_hg19_v1_chr11_+_43380492 AK001752 BC017238 BC033000	-323655	+	TSC_hg19_v1_chr11_+_43902380 NM_139178 AK315266 AB042029 BC067257	198246	+	TSC_hg19_v1_chr11_+_43964186 NM_001145033 BC052560	259862	+	AB231734 NM_001031854 BC144554	365400	+	NM_016142|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK027882|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK075011|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK292625|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK075216|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK074952|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AF078850|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##BC012043|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK222881|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK301663|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##BC012536|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##EU176708|HSD17B12|51144|hydroxysteroid (17-beta) dehydrogenase 12##AK001752|TTC17|55761|tetratricopeptide repeat domain 17##BC017238|TTC17|55761|tetratricopeptide repeat domain 17##BC033000|TTC17|55761|tetratricopeptide repeat domain 17##NM_139178|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##AK315266|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##AB042029|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##BC067257|ALKBH3|221120|alkB, alkylation repair homolog 3 (E. coli)##NM_001145033|C11orf96|387763|chromosome 11 open reading frame 96##BC052560|C11orf96|387763|chromosome 11 open reading frame 96##AB231734|ACCSL|390110|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like##NM_001031854|ACCSL|390110|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like##BC144554|ACCSL|390110|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like	0.995156	0.0	
chr13	40176667	40176847	reg1002621.p2	4.010	+	TSC_hg19_v1_chr13_+_39612534 AL833329 NM_001012754 NM_001017370 BX648122 BC052492 BC140877 BC140878 CR749318 AK300260 AK299198 BX647872	-564222	+	TSC_hg19_v1_chr13_-_39612251 NM_025138 NM_170719	-564504	-	TSC_hg19_v1_chr13_-_39612201 AK074360 AB107354	-564556	-	AF098807 BC017824 TSC_hg19_v1_chr13_-_40177268	487	-	TSC_hg19_v1_chr13_-_40177309 AK129819 AK223369 AK313036	570	-	NM_005780 TSC_hg19_v1_chr13_-_40177356	605	-	AL833329|NHLRC3|387921|NHL repeat containing 3##NM_001012754|NHLRC3|387921|NHL repeat containing 3##NM_001017370|NHLRC3|387921|NHL repeat containing 3##BX648122|NHLRC3|387921|NHL repeat containing 3##BC052492|NHLRC3|387921|NHL repeat containing 3##BC140877|NHLRC3|387921|NHL repeat containing 3##BC140878|NHLRC3|387921|NHL repeat containing 3##CR749318|NHLRC3|387921|NHL repeat containing 3##AK300260|NHLRC3|387921|NHL repeat containing 3##AK299198|NHLRC3|387921|NHL repeat containing 3##BX647872|NHLRC3|387921|NHL repeat containing 3##NM_025138|PROSER1|80209|proline and serine rich 1##NM_170719|PROSER1|80209|proline and serine rich 1##AK074360|PROSER1|80209|proline and serine rich 1##AB107354|PROSER1|80209|proline and serine rich 1##AF098807|LHFP|10186|lipoma HMGIC fusion partner##BC017824|LHFP|10186|lipoma HMGIC fusion partner##AK129819|LHFP|10186|lipoma HMGIC fusion partner##AK223369|LHFP|10186|lipoma HMGIC fusion partner##AK313036|LHFP|10186|lipoma HMGIC fusion partner##NM_005780|LHFP|10186|lipoma HMGIC fusion partner	0.0	0.144851	
chr14	50809613	50809744	reg1009904.p1	4.010	+	TSC_hg19_v1_chr14_+_50779043 BC011549 NM_001003803 NM_001003805 NM_015684 AF052186 U79253	-30637	+	TSC_hg19_v1_chr14_-_50778948 CU675259 AY757363 BC006117 AK309294 AK022680 AK292627 NM_024884	-30798	-	AB209277 TSC_hg19_v1_chr14_-_50698111 NM_006939	-111578	-	BC104977 NM_004196	52938	-	TSC_hg19_v1_chr14_-_50999306 BC036013 NM_006575 NM_198794 U77129	189632	-	NM_001127713	190121	+	BC011549|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003803|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_001003805|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##NM_015684|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AF052186|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##U79253|ATP5S|27109|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)##AY757363|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##BC006117|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK309294|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK022680|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AK292627|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##NM_024884|L2HGDH|79944|L-2-hydroxyglutarate dehydrogenase##AB209277|SOS2|6655|son of sevenless homolog 2 (Drosophila)##NM_006939|SOS2|6655|son of sevenless homolog 2 (Drosophila)##BC104977|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##NM_004196|CDKL1|8814|cyclin-dependent kinase-like 1 (CDC2-related kinase)##BC036013|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_006575|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_198794|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##U77129|MAP4K5|11183|mitogen-activated protein kinase kinase kinase kinase 5##NM_001127713|ATL1|51062|atlastin GTPase 1	0.0	0.0	
chr14	77526024	77526090	reg1015692.p1	4.010	+	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-30997	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-31373	-	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-233262	+	AK124327 TSC_hg19_v1_chr14_-_77542533	16476	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	38588	+	BC117676 TSC_hg19_v1_chr14_-_77608072	81958	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.0	0.560742	CTCF.p2:6:0.561
chr4	144480509	144480609	reg1011363.p2	4.010	+	AB384709 TSC_hg19_v1_chr4_+_144435139	-45445	+	TSC_hg19_v1_chr4_+_144434860 NM_003601 AK316444 AK302841 BC023144 AB010882 AK308424	-45831	+	NM_002039 NM_207123 AK289767 BC064848	-222544	+	TSC_hg19_v1_chr4_+_144480613 AX721285 AX721289 BC025996	57	+	NM_001168235	141268	-	EU176664 BC064396 BC017864 M29610 NM_002102 NM_198682	346128	-	NM_003601|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK316444|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK302841|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##BC023144|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AB010882|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##AK308424|SMARCA5|8467|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5##NM_002039|GAB1|2549|GRB2-associated binding protein 1##NM_207123|GAB1|2549|GRB2-associated binding protein 1##AK289767|GAB1|2549|GRB2-associated binding protein 1##BC064848|GAB1|2549|GRB2-associated binding protein 1##BC025996|GUSBP5|441046|glucuronidase, beta pseudogene 5##NM_001168235|FREM3|166752|FRAS1 related extracellular matrix 3##EU176664|GYPE|2996|glycophorin E (MNS blood group)##BC064396|GYPE|2996|glycophorin E (MNS blood group)##BC017864|GYPE|2996|glycophorin E (MNS blood group)##M29610|GYPE|2996|glycophorin E (MNS blood group)##NM_002102|GYPE|2996|glycophorin E (MNS blood group)##NM_198682|GYPE|2996|glycophorin E (MNS blood group)	0.0	0.0	
chr6	149968683	149968776	reg1014049.p2	4.010	+	TSC_hg19_v1_chr6_+_149887543 AK311061	-81185	+	TSC_hg19_v1_chr6_+_149887540 AK295690 BC014320 NM_138785 AK315729 AK289402 AK308844	-81218	+	TSC_hg19_v1_chr6_+_149887361 AY358952	-81354	+	TSC_hg19_v1_chr6_-_149969770 BC050428	1042	-	AK292090 TSC_hg19_v1_chr6_-_149969851	1121	-	TSC_hg19_v1_chr6_-_149969879 NM_001204076 NM_007044	1169	-	AK311061|C6orf72|116254|chromosome 6 open reading frame 72##AK295690|C6orf72|116254|chromosome 6 open reading frame 72##BC014320|C6orf72|116254|chromosome 6 open reading frame 72##NM_138785|C6orf72|116254|chromosome 6 open reading frame 72##AK315729|C6orf72|116254|chromosome 6 open reading frame 72##AK289402|C6orf72|116254|chromosome 6 open reading frame 72##AK308844|C6orf72|116254|chromosome 6 open reading frame 72##AY358952|C6orf72|116254|chromosome 6 open reading frame 72##BC050428|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##AK292090|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##NM_001204076|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##NM_007044|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1	1.830582	0.0	denovo_WM_7:-47:0.779	denovo_WM_7:-62:0.428	denovo_WM_7:-63:0.440
chr6	150029509	150029641	reg1008730.p1	4.010	+	TSC_hg19_v1_chr6_-_149969879 NM_001204076 NM_007044	-59677	-	AK292090 TSC_hg19_v1_chr6_-_149969851	-59725	-	TSC_hg19_v1_chr6_-_149969770 BC050428	-59804	-	BC015665 TSC_hg19_v1_chr6_-_150039204	9607	-	TSC_hg19_v1_chr6_-_150039235 BC002767	9654	-	AF104413 NM_004690	9816	-	NM_001204076|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##NM_007044|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##AK292090|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##BC050428|KATNA1|11104|katanin p60 (ATPase containing) subunit A 1##BC015665|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)##BC002767|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)##AF104413|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)##NM_004690|LATS1|9113|LATS, large tumor suppressor, homolog 1 (Drosophila)	0.995856	0.0	
chr9	16726592	16726667	reg1020150.p2	4.010	+	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	-1173608	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-1215669	-	AF098483 AF098482 NM_021144	-1216382	-	TSC_hg19_v1_chr9_-_16727889 AY438376	1268	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	144038	-	TSC_hg19_v1_chr9_-_16870747 CR933649 AK299073 NM_017637	144137	-	AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AY438376|BNC2|54796|basonuclin 2##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2##CR933649|BNC2|54796|basonuclin 2##AK299073|BNC2|54796|basonuclin 2##NM_017637|BNC2|54796|basonuclin 2	0.999844	0.0	
chr10	75987891	75987961	reg1013216.p1	4.009	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-51339	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-51396	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-51444	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	598428	+	AY686755 NM_001003892 BC137321 BC137322	830379	-	AB027004 AB103375 NM_016364	871321	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.0	0.0	
chr1	42948609	42948735	reg1005985.p2	4.009	+	TSC_hg19_v1_chr1_+_42928956 AL832217	-19724	+	BC104938 BC112015 NM_001077447 NM_024664 TSC_hg19_v1_chr1_+_42922213 BC062586 BC106064 AK021900	-26474	+	AK301839 BC024186 AK057384 NM_001146192 NM_032257	-26742	-	BC090885 BC101199 BC101200 TSC_hg19_v1_chr1_-_42966086	17346	-	NM_001080850	51887	+	NM_006347 TSC_hg19_v1_chr1_+_43124093 AK310052 AK311979 BC003412 AK309438 AF016371 AF036331 DQ890971 DQ894146 BT019343 CR541899 CR541920	175410	+	AL832217|CCDC30|728621|coiled-coil domain containing 30##BC104938|PPCS|79717|phosphopantothenoylcysteine synthetase##BC112015|PPCS|79717|phosphopantothenoylcysteine synthetase##NM_001077447|PPCS|79717|phosphopantothenoylcysteine synthetase##NM_024664|PPCS|79717|phosphopantothenoylcysteine synthetase##BC062586|PPCS|79717|phosphopantothenoylcysteine synthetase##BC106064|PPCS|79717|phosphopantothenoylcysteine synthetase##AK021900|PPCS|79717|phosphopantothenoylcysteine synthetase##AK301839|ZMYND12|84217|zinc finger, MYND-type containing 12##BC024186|ZMYND12|84217|zinc finger, MYND-type containing 12##AK057384|ZMYND12|84217|zinc finger, MYND-type containing 12##NM_001146192|ZMYND12|84217|zinc finger, MYND-type containing 12##NM_032257|ZMYND12|84217|zinc finger, MYND-type containing 12##BC101199|TMSB4XP1|7115|thymosin beta 4, X-linked pseudogene 1##BC101200|TMSB4XP1|7115|thymosin beta 4, X-linked pseudogene 1##NM_001080850|CCDC30|728621|coiled-coil domain containing 30##NM_006347|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK310052|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK311979|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##BC003412|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AK309438|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AF016371|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##AF036331|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##DQ890971|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##DQ894146|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##BT019343|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##CR541899|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)##CR541920|PPIH|10465|peptidylprolyl isomerase H (cyclophilin H)	0.996259	0.0	
chr20	49093103	49093202	reg1008963.p1	4.009	+	TSC_hg19_v1_chr20_+_48807463 AB464474 EU832661 EU832739	-285522	+	TSC_hg19_v1_chr20_+_48807366 AK291536 BC021931 AF289608 BC007538	-285771	+	NM_005194 TSC_hg19_v1_chr20_+_48807197	-285959	+	TSC_hg19_v1_chr20_+_49126895 AK290638 NM_002827	33724	+	TSC_hg19_v1_chr20_+_49126916 AK316563	33761	+	AK299830 TSC_hg19_v1_chr20_+_49126919	33767	+	EU832661|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##EU832739|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK291536|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC021931|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AF289608|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##BC007538|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##NM_005194|CEBPB|1051|CCAAT/enhancer binding protein (C/EBP), beta##AK290638|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##NM_002827|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK316563|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1	1.995437	0.0	denovo_WM_7:19:0.760	denovo_WM_7:-64:0.559
chr2	69616301	69616409	reg1010512.p1	4.009	+	TSC_hg19_v1_chr2_-_69614353 M90516 BC045641 NM_001244710 NM_002056	-1950	-	TSC_hg19_v1_chr2_+_69240310 NM_018153 NM_032208 NM_053034 AF279145 AK001463 AY928974 AY928975 AY928976 AY928977 AK223273 BC012074 AK309553 AF421380 AK292113 CU680200 EU832615 EU832687	-375972	+	AB039886 AJ966789 NM_019617 AB590637 AY139184 AK098489 AY456961 BC059778 AY359050	-414613	+	AJ132584 AF132967 AB528729 HQ258750 TSC_hg19_v1_chr2_-_69664568 AK300700 AK308567	48218	-	TSC_hg19_v1_chr2_-_69664606 AY286306 AY286307 BX538347	48259	-	BC113692 BC113694 AY335194 NM_001002755 NM_001002756 NM_001002757 NM_015700 TSC_hg19_v1_chr2_-_69664788	48404	-	M90516|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##BC045641|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##NM_001244710|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##NM_002056|GFPT1|2673|glutamine--fructose-6-phosphate transaminase 1##NM_018153|ANTXR1|84168|anthrax toxin receptor 1##NM_032208|ANTXR1|84168|anthrax toxin receptor 1##NM_053034|ANTXR1|84168|anthrax toxin receptor 1##AF279145|ANTXR1|84168|anthrax toxin receptor 1##AK001463|ANTXR1|84168|anthrax toxin receptor 1##AK223273|ANTXR1|84168|anthrax toxin receptor 1##BC012074|ANTXR1|84168|anthrax toxin receptor 1##AK309553|ANTXR1|84168|anthrax toxin receptor 1##AF421380|ANTXR1|84168|anthrax toxin receptor 1##AK292113|ANTXR1|84168|anthrax toxin receptor 1##EU832615|ANTXR1|84168|anthrax toxin receptor 1##EU832687|ANTXR1|84168|anthrax toxin receptor 1##AB039886|GKN1|56287|gastrokine 1##AJ966789|GKN1|56287|gastrokine 1##NM_019617|GKN1|56287|gastrokine 1##AY139184|GKN1|56287|gastrokine 1##AK098489|GKN1|56287|gastrokine 1##AY456961|GKN1|56287|gastrokine 1##BC059778|GKN1|56287|gastrokine 1##AY359050|GKN1|56287|gastrokine 1##AJ132584|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AF132967|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##HQ258750|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK300700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK308567|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286306|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286307|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BX538347|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BC113692|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BC113694|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY335194|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002755|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002756|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002757|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_015700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)	1.841669	0.0	denovo_WM_7:85:0.260	denovo_WM_7:86:0.669	denovo_WM_7:102:0.845
chr3	33475728	33475905	reg1010145.p2	4.009	+	TSC_hg19_v1_chr3_+_33318965 AK001271 NM_012157 AK302218 NM_001171713 AK303764 AK299665 AK294209 AF174589 AK316229 AK001438 AK298967 AK297534 AF186273 BC031556	-156866	+	AB011099 NM_015551	-215110	-	TSC_hg19_v1_chr3_+_33155562 AJ006470 CU679079 DQ893221 DQ896550	-320243	+	AK023274 AF198487 TSC_hg19_v1_chr3_-_33481564	5720	-	TSC_hg19_v1_chr3_-_33481868 BC047235 NM_001128160 NM_014517	6049	-	TSC_hg19_v1_chr3_-_33481898 AK293100 NM_001128161	6084	-	AK001271|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_012157|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK302218|FBXL2|25827|F-box and leucine-rich repeat protein 2##NM_001171713|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK303764|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK299665|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK294209|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF174589|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK316229|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK001438|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK298967|FBXL2|25827|F-box and leucine-rich repeat protein 2##AK297534|FBXL2|25827|F-box and leucine-rich repeat protein 2##AF186273|FBXL2|25827|F-box and leucine-rich repeat protein 2##BC031556|FBXL2|25827|F-box and leucine-rich repeat protein 2##AB011099|SUSD5|26032|sushi domain containing 5##NM_015551|SUSD5|26032|sushi domain containing 5##AJ006470|CRTAP|10491|cartilage associated protein##DQ893221|CRTAP|10491|cartilage associated protein##DQ896550|CRTAP|10491|cartilage associated protein##AK023274|UBP1|7342|upstream binding protein 1 (LBP-1a)##AF198487|UBP1|7342|upstream binding protein 1 (LBP-1a)##BC047235|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128160|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_014517|UBP1|7342|upstream binding protein 1 (LBP-1a)##AK293100|UBP1|7342|upstream binding protein 1 (LBP-1a)##NM_001128161|UBP1|7342|upstream binding protein 1 (LBP-1a)	1.011345	0.0	
chr5	160856450	160856568	reg1016020.p1	4.009	+	AB018258 AK295081 AK090832 AX746642 NM_025153	-577378	-	AK025130 TSC_hg19_v1_chr5_-_160112393	-744170	-	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-1007606	+	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	118617	-	NM_000811	256148	+	AK289792 NM_000806 AK295160	417732	+	AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##AK025130|ATP10B|23120|ATPase, class V, type 10B##BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000811|GABRA6|2559|gamma-aminobutyric acid (GABA) A receptor, alpha 6##AK289792|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##NM_000806|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1##AK295160|GABRA1|2554|gamma-aminobutyric acid (GABA) A receptor, alpha 1	0.0	0.0	
chr7	35845602	35845728	reg1014623.p2	4.009	+	DQ232879 TSC_hg19_v1_chr7_+_35840853 BC067264 AK300601 AB209677	-4813	+	TSC_hg19_v1_chr7_+_35840828 AB073389 AK223225 AK223241 AK297883 AK298453 BC025987 BX571755 S72008 BC093640 BC093642	-4832	+	NM_001011553 NM_001242956 NM_001788 TSC_hg19_v1_chr7_+_35840766 BC107718 AK290545	-4955	+	TSC_hg19_v1_chr7_+_36192789 NM_030636	347140	+	TSC_hg19_v1_chr7_+_36192862 AK027386 BC065518	347218	+	TSC_hg19_v1_chr7_+_36193025 AB051493	347390	+	DQ232879|SEPT7|989|septin 7##BC067264|SEPT7|989|septin 7##AK300601|SEPT7|989|septin 7##AB209677|SEPT7|989|septin 7##AB073389|SEPT7|989|septin 7##AK223225|SEPT7|989|septin 7##AK223241|SEPT7|989|septin 7##AK297883|SEPT7|989|septin 7##AK298453|SEPT7|989|septin 7##BC025987|SEPT7|989|septin 7##BX571755|SEPT7|989|septin 7##S72008|SEPT7|989|septin 7##BC093640|SEPT7|989|septin 7##BC093642|SEPT7|989|septin 7##NM_001011553|SEPT7|989|septin 7##NM_001242956|SEPT7|989|septin 7##NM_001788|SEPT7|989|septin 7##BC107718|SEPT7|989|septin 7##AK290545|SEPT7|989|septin 7##NM_030636|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AK027386|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##BC065518|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1##AB051493|EEPD1|80820|endonuclease/exonuclease/phosphatase family domain containing 1	0.0	0.0	
chrX	70712824	70712961	reg1010484.p2	4.009	+	D90359 NM_004606 NM_138923 TSC_hg19_v1_chrX_+_70586179 AK310201 AB300418	-126746	+	AF140690 NM_012278 BC108901 AF110225 AB529088	-191252	+	TSC_hg19_v1_chrX_+_70503534 U02493 U89867	-209349	+	NM_181672 NM_181673 TSC_hg19_v1_chrX_+_70752924 AL833085	40033	+	TSC_hg19_v1_chrX_+_70752953 AK026724 AK300267 BX537844 BC038180 BC014434	40071	+	TSC_hg19_v1_chrX_+_70765496 AL050366	52630	+	D90359|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##NM_004606|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##NM_138923|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##AK310201|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##AB300418|TAF1|6872|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa##AF140690|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##NM_012278|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##BC108901|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##AF110225|ITGB1BP2|26548|integrin beta 1 binding protein (melusin) 2##U02493|NONO|4841|non-POU domain containing, octamer-binding##U89867|NONO|4841|non-POU domain containing, octamer-binding##NM_181672|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##NM_181673|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##AL833085|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##AK300267|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##BX537844|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##BC038180|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##BC014434|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##AL050366|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	0.996941	0.0	denovo_WM_7:-10:0.841
chr10	126339338	126339438	reg1013162.p1	4.008	+	BC113629 BC113631 NM_001167880 NM_022126 TSC_hg19_v1_chr10_+_126150391 BC110344 BC073172 AK055532 BC007324 HQ258160	-188967	+	NM_001146340 TSC_hg19_v1_chr10_-_126138606	-200811	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	-231870	-	D50930 TSC_hg19_v1_chr10_-_126432660	93256	-	TSC_hg19_v1_chr10_-_126432823 BC031654	93428	-	TSC_hg19_v1_chr10_-_126432908 NM_014661	93523	-	BC113629|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC113631|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_001167880|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_022126|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC110344|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC073172|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##AK055532|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC007324|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##HQ258160|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_001146340|NKX1-2|390010|NK1 homeobox 2##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##D50930|FAM53B|9679|family with sequence similarity 53, member B##BC031654|FAM53B|9679|family with sequence similarity 53, member B##NM_014661|FAM53B|9679|family with sequence similarity 53, member B	0.0	0.0	
chr10	3665698	3665773	reg1017059.p1	4.008	+	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-450730	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	-450765	-	BC045577 TSC_hg19_v1_chr10_-_3214936	-450810	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	161576	-	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	161774	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	1202683	+	BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2	0.995093	0.0	denovo_WM_7:36:0.983
chr20	12990497	12990585	reg1010859.p2	4.008	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-900	+	AK316256 TSC_hg19_v1_chr20_+_11898540 NM_014962 AB023169 BC109315 BC109316	-1091984	+	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	-1119092	+	NM_080826 TSC_hg19_v1_chr20_+_13202422	211882	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	629023	-	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	775000	-	BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK316256|BTBD3|22903|BTB (POZ) domain containing 3##NM_014962|BTBD3|22903|BTB (POZ) domain containing 3##AB023169|BTBD3|22903|BTB (POZ) domain containing 3##BC109315|BTBD3|22903|BTB (POZ) domain containing 3##BC109316|BTBD3|22903|BTB (POZ) domain containing 3##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3##NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	0.0	0.0	
chr3	54462477	54462562	reg1017124.p1	4.008	+	TSC_hg19_v1_chr3_+_54156691 AF516696 NM_018398	-305828	+	BC137502 BC137505 TSC_hg19_v1_chr3_+_54156614	-305920	+	TSC_hg19_v1_chr3_-_53925897 AF537132 AK289594 BC013162 AK123406 AF085359 AF161415 NM_021237	-536590	-	BC074741 AF225421 NM_020678	499497	-	TSC_hg19_v1_chr3_-_55514935 CU687936 AB590996 BC074783	1052425	-	TSC_hg19_v1_chr3_-_55515377 L20861	1052856	-	AF516696|CACNA2D3|55799|calcium channel, voltage-dependent, alpha 2/delta subunit 3##NM_018398|CACNA2D3|55799|calcium channel, voltage-dependent, alpha 2/delta subunit 3##BC137502|CACNA2D3|55799|calcium channel, voltage-dependent, alpha 2/delta subunit 3##BC137505|CACNA2D3|55799|calcium channel, voltage-dependent, alpha 2/delta subunit 3##AF537132|SELK|58515|selenoprotein K##AK289594|SELK|58515|selenoprotein K##BC013162|SELK|58515|selenoprotein K##AK123406|SELK|58515|selenoprotein K##AF085359|SELK|58515|selenoprotein K##AF161415|SELK|58515|selenoprotein K##NM_021237|SELK|58515|selenoprotein K##BC074741|LRTM1|57408|leucine-rich repeats and transmembrane domains 1##AF225421|LRTM1|57408|leucine-rich repeats and transmembrane domains 1##NM_020678|LRTM1|57408|leucine-rich repeats and transmembrane domains 1##BC074783|WNT5A|7474|wingless-type MMTV integration site family, member 5A##L20861|WNT5A|7474|wingless-type MMTV integration site family, member 5A	0.999476	0.503642	CTCF.p2:-23:0.504	denovo_WM_7:94:0.621	denovo_WM_7:95:0.232
chr10	103562817	103562918	reg1014904.p2	4.007	+	TSC_hg19_v1_chr10_-_103543157 AF081280 AY049737 NM_006993	-19696	-	CU691104 BC041067 TSC_hg19_v1_chr10_-_103543153 BC054868	-19717	-	NM_001206389	-22742	-	AB014579 TSC_hg19_v1_chr10_-_103577919	14998	-	TSC_hg19_v1_chr10_-_103578172 AF036144 AF307332 BC047877	15307	-	BC039583 TSC_hg19_v1_chr10_-_103578180	15312	-	AF081280|NPM3|10360|nucleophosmin/nucleoplasmin 3##AY049737|NPM3|10360|nucleophosmin/nucleoplasmin 3##NM_006993|NPM3|10360|nucleophosmin/nucleoplasmin 3##BC041067|NPM3|10360|nucleophosmin/nucleoplasmin 3##BC054868|NPM3|10360|nucleophosmin/nucleoplasmin 3##NM_001206389|FGF8|2253|fibroblast growth factor 8 (androgen-induced)##AB014579|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##AF036144|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##AF307332|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC047877|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC039583|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)	0.99736	0.0	denovo_WM_7:37:0.816
chr10	43912418	43912500	reg1016383.p1	4.007	+	TSC_hg19_v1_chr10_-_43904631 BC015580 BC004254 AK296696 NM_004966 NM_001098204	-7813	-	TSC_hg19_v1_chr10_-_43904306 AK001364 NM_001098205	-8141	-	TSC_hg19_v1_chr10_-_43903224 BC016736 NM_001098206	-9200	-	AK302442 TSC_hg19_v1_chr10_+_43932667	20161	+	NM_005674 X82125	151447	-	BC026030 X82128 AK292013 NM_001099282 NM_001099283 NM_001099284	157577	-	BC015580|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC004254|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK296696|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_004966|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098204|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK001364|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098205|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC016736|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098206|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK302442|ZNF487P|642819|zinc finger protein 487, pseudogene##NM_005674|ZNF239|8187|zinc finger protein 239##X82125|ZNF239|8187|zinc finger protein 239##BC026030|ZNF239|8187|zinc finger protein 239##X82128|ZNF239|8187|zinc finger protein 239##AK292013|ZNF239|8187|zinc finger protein 239##NM_001099282|ZNF239|8187|zinc finger protein 239##NM_001099283|ZNF239|8187|zinc finger protein 239##NM_001099284|ZNF239|8187|zinc finger protein 239	0.99174	0.0	denovo_WM_7:17:0.331	denovo_WM_7:18:0.331	denovo_WM_7:19:0.331
chr11	90323102	90323176	reg1011502.p2	4.007	+	TSC_hg19_v1_chr11_+_89984372 EU302123	-338729	+	AK290231 NM_001144073 NM_012124	-366608	-	CU687242 BC002339 BC072461 TSC_hg19_v1_chr11_-_89956218 AF192466 AK226099 AK225565 AK312663 AF123249 AK225365	-366937	-	NM_001008781	1762122	+	BC069163 NM_005959 U25341 AY521019	2379700	+	TSC_hg19_v1_chr11_-_92930978 CU690400	2607848	-	AK290231|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001144073|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_012124|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC002339|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##BC072461|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF192466|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK226099|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225565|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK312663|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AF123249|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##AK225365|CHORDC1|26973|cysteine and histidine-rich domain (CHORD) containing 1##NM_001008781|FAT3|120114|FAT tumor suppressor homolog 3 (Drosophila)##BC069163|MTNR1B|4544|melatonin receptor 1B##NM_005959|MTNR1B|4544|melatonin receptor 1B##U25341|MTNR1B|4544|melatonin receptor 1B##AY521019|MTNR1B|4544|melatonin receptor 1B	0.0	0.0	
chr15	91240874	91240968	reg1013889.p1	4.007	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-167725	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-309382	+	TSC_hg19_v1_chr15_+_90931506 BC005906	-309415	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	19693	+	NM_002569 X17094	170963	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	186780	+	AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC005906|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene	0.999544	0.0	
chr20	56055917	56056031	reg1016584.p1	4.007	+	TSC_hg19_v1_chr20_+_55966453 NM_017495 NM_183425 AF432218	-89517	+	NM_001190472	-121097	-	AK292247 AY349350 NM_001015885	-129373	+	BC130486 AF336042 DQ778111 DQ778124 DQ778125 DQ778126 DQ778127 DQ778128 DQ778129 NM_080618 BC060763 AK313990 AK128070	44227	-	NM_002591 AK290802 TSC_hg19_v1_chr20_+_56136165 AK300072 BC023978 BX648510 L05144	80183	+	BC131706 AK314062 AK290918 BC028218 AJ300575 AX775973 AX775975 AK122761 NM_001160417 NM_001160418 NM_001160419 NM_030776	139564	-	NM_017495|RBM38|55544|RNA binding motif protein 38##NM_183425|RBM38|55544|RNA binding motif protein 38##AF432218|RBM38|55544|RNA binding motif protein 38##NM_001190472|MTRNR2L3|100462983|MT-RNR2-like 3##AK292247|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##AY349350|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##NM_001015885|RAE1|8480|RAE1 RNA export 1 homolog (S. pombe)##BC130486|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AF336042|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778111|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778124|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778125|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778126|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778127|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778128|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##DQ778129|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_080618|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##BC060763|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK313990|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##AK128070|CTCFL|140690|CCCTC-binding factor (zinc finger protein)-like##NM_002591|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK290802|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##AK300072|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC023978|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BX648510|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##L05144|PCK1|5105|phosphoenolpyruvate carboxykinase 1 (soluble)##BC131706|ZBP1|81030|Z-DNA binding protein 1##AK314062|ZBP1|81030|Z-DNA binding protein 1##AK290918|ZBP1|81030|Z-DNA binding protein 1##BC028218|ZBP1|81030|Z-DNA binding protein 1##AJ300575|ZBP1|81030|Z-DNA binding protein 1##AX775973|ZBP1|81030|Z-DNA binding protein 1##AX775975|ZBP1|81030|Z-DNA binding protein 1##AK122761|ZBP1|81030|Z-DNA binding protein 1##NM_001160417|ZBP1|81030|Z-DNA binding protein 1##NM_001160418|ZBP1|81030|Z-DNA binding protein 1##NM_001160419|ZBP1|81030|Z-DNA binding protein 1##NM_030776|ZBP1|81030|Z-DNA binding protein 1	0.0	0.0	
chr6_qbl_hap6	3091673	3091853	reg1001768.p2	4.007	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr7	26404895	26405007	reg1016577.p1	4.007	+	AK309162 NM_001199838	-1007	+	NM_001199837 AK307905	-4423	+	TSC_hg19_v1_chr7_+_26331633 BC031050 AK312850 AK296142	-73304	+	TSC_hg19_v1_chr7_+_26438248 AK056484	33311	+	AK093321 AX748054 NM_001145531	272538	+	AF072166 AJ004886 AB528968 DQ892896 DQ896144 AB014486 TSC_hg19_v1_chr7_-_26904210 BC002893 AK222885 AK313209 BC036044 AF051323 NM_003930	499242	-	AK309162|SNX10|29887|sorting nexin 10##NM_001199838|SNX10|29887|sorting nexin 10##NM_001199837|SNX10|29887|sorting nexin 10##AK307905|SNX10|29887|sorting nexin 10##BC031050|SNX10|29887|sorting nexin 10##AK312850|SNX10|29887|sorting nexin 10##AK296142|SNX10|29887|sorting nexin 10##AK056484|LOC441204|441204|uncharacterized LOC441204##AK093321|C7orf71|285941|chromosome 7 open reading frame 71##NM_001145531|C7orf71|285941|chromosome 7 open reading frame 71##AF072166|SKAP2|8935|src kinase associated phosphoprotein 2##AJ004886|SKAP2|8935|src kinase associated phosphoprotein 2##DQ892896|SKAP2|8935|src kinase associated phosphoprotein 2##DQ896144|SKAP2|8935|src kinase associated phosphoprotein 2##AB014486|SKAP2|8935|src kinase associated phosphoprotein 2##BC002893|SKAP2|8935|src kinase associated phosphoprotein 2##AK222885|SKAP2|8935|src kinase associated phosphoprotein 2##AK313209|SKAP2|8935|src kinase associated phosphoprotein 2##BC036044|SKAP2|8935|src kinase associated phosphoprotein 2##AF051323|SKAP2|8935|src kinase associated phosphoprotein 2##NM_003930|SKAP2|8935|src kinase associated phosphoprotein 2	0.0	0.716494	CTCF.p2:-26:0.716
chr8	61435382	61435467	reg1015811.p2	4.007	+	TSC_hg19_v1_chr8_+_61429737 M28213 AB528604 CU679191 AF498930 BT019695	-5674	+	TSC_hg19_v1_chr8_+_61429570 X12953 BC008929	-5860	+	TSC_hg19_v1_chr8_+_61429545 AK312344	-5878	+	TSC_hg19_v1_chr8_+_61591302 NM_017780 BC068000	155864	+	BC053890 TSC_hg19_v1_chr8_+_61591379 BC110818 BC033116 BC041018 BC014681	155978	+	NM_173519 AF445194 BC048992 AK091641 AX747107 BC042617 AY094971 AK313040	765126	+	M28213|RAB2A|5862|RAB2A, member RAS oncogene family##AF498930|RAB2A|5862|RAB2A, member RAS oncogene family##BT019695|RAB2A|5862|RAB2A, member RAS oncogene family##X12953|RAB2A|5862|RAB2A, member RAS oncogene family##BC008929|RAB2A|5862|RAB2A, member RAS oncogene family##AK312344|RAB2A|5862|RAB2A, member RAS oncogene family##NM_017780|CHD7|55636|chromodomain helicase DNA binding protein 7##BC068000|CHD7|55636|chromodomain helicase DNA binding protein 7##BC053890|CHD7|55636|chromodomain helicase DNA binding protein 7##BC110818|CHD7|55636|chromodomain helicase DNA binding protein 7##BC033116|CHD7|55636|chromodomain helicase DNA binding protein 7##BC041018|CHD7|55636|chromodomain helicase DNA binding protein 7##BC014681|CHD7|55636|chromodomain helicase DNA binding protein 7##NM_173519|CLVS1|157807|clavesin 1##AF445194|CLVS1|157807|clavesin 1##BC048992|CLVS1|157807|clavesin 1##AK091641|CLVS1|157807|clavesin 1##BC042617|CLVS1|157807|clavesin 1##AY094971|CLVS1|157807|clavesin 1##AK313040|CLVS1|157807|clavesin 1	0.374018	0.0	denovo_WM_7:1:0.323
chrX	119603250	119603367	reg1016607.p2	4.007	+	TSC_hg19_v1_chrX_-_119603160 BC002965 S79873 U36336 X77196 AK295038 NM_001122606 NM_002294 NM_013995	-114	-	TSC_hg19_v1_chrX_-_119603152 AK291090 AK293931	-163	-	TSC_hg19_v1_chrX_-_119603122 J04183	-208	-	AY365125 AF212995 TSC_hg19_v1_chrX_-_119694635 AK123688	91274	-	TSC_hg19_v1_chrX_-_119694758 BX537787 BX647096 CR936722 NM_001079872	91459	-	TSC_hg19_v1_chrX_-_119694954 BX537641	91610	-	BC002965|LAMP2|3920|lysosomal-associated membrane protein 2##S79873|LAMP2|3920|lysosomal-associated membrane protein 2##U36336|LAMP2|3920|lysosomal-associated membrane protein 2##X77196|LAMP2|3920|lysosomal-associated membrane protein 2##AK295038|LAMP2|3920|lysosomal-associated membrane protein 2##NM_001122606|LAMP2|3920|lysosomal-associated membrane protein 2##NM_002294|LAMP2|3920|lysosomal-associated membrane protein 2##NM_013995|LAMP2|3920|lysosomal-associated membrane protein 2##AK291090|LAMP2|3920|lysosomal-associated membrane protein 2##AK293931|LAMP2|3920|lysosomal-associated membrane protein 2##J04183|LAMP2|3920|lysosomal-associated membrane protein 2##AY365125|CUL4B|8450|cullin 4B##AF212995|CUL4B|8450|cullin 4B##AK123688|CUL4B|8450|cullin 4B##BX537787|CUL4B|8450|cullin 4B##BX647096|CUL4B|8450|cullin 4B##CR936722|CUL4B|8450|cullin 4B##NM_001079872|CUL4B|8450|cullin 4B##BX537641|CUL4B|8450|cullin 4B	1.968499	0.0	denovo_WM_7:37:0.898	denovo_WM_7:58:0.228	denovo_WM_7:59:0.228	denovo_WM_7:60:0.228	denovo_WM_7:61:0.228
chr1	117608495	117608633	reg1013859.p1	4.006	+	TSC_hg19_v1_chr1_+_117602948 AF073771 NM_003594 AF080255 BC015341 BC030058	-5610	+	AK291017 TSC_hg19_v1_chr1_+_117602939	-5640	+	AK307542 NM_004258 AK298237 BC130327 BC136484 BC171768 Z33642 AB384713	-64159	+	AK023243 AK222901 BC034943 AY669488 NM_001145635 NM_025188	55815	-	AK303466 NM_001253849	137893	-	AY280972 DQ103757 AB590614 BC074729 AY346100 AY358352 AK026071 AK225413 AK310812 AY442303 BC065717 BX648021 DQ836392 NM_001253850 NM_024626	144964	-	AF073771|TTF2|8458|transcription termination factor, RNA polymerase II##NM_003594|TTF2|8458|transcription termination factor, RNA polymerase II##AF080255|TTF2|8458|transcription termination factor, RNA polymerase II##BC015341|TTF2|8458|transcription termination factor, RNA polymerase II##BC030058|TTF2|8458|transcription termination factor, RNA polymerase II##AK291017|TTF2|8458|transcription termination factor, RNA polymerase II##AK307542|CD101|9398|CD101 molecule##NM_004258|CD101|9398|CD101 molecule##AK298237|CD101|9398|CD101 molecule##BC130327|CD101|9398|CD101 molecule##BC136484|CD101|9398|CD101 molecule##BC171768|CD101|9398|CD101 molecule##Z33642|CD101|9398|CD101 molecule##AK023243|TRIM45|80263|tripartite motif containing 45##AK222901|TRIM45|80263|tripartite motif containing 45##BC034943|TRIM45|80263|tripartite motif containing 45##AY669488|TRIM45|80263|tripartite motif containing 45##NM_001145635|TRIM45|80263|tripartite motif containing 45##NM_025188|TRIM45|80263|tripartite motif containing 45##AK303466|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##NM_001253849|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AY280972|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##DQ103757|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##BC074729|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AY346100|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AY358352|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AK026071|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AK225413|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AK310812|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##AY442303|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##BC065717|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##BX648021|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##DQ836392|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##NM_001253850|VTCN1|79679|V-set domain containing T cell activation inhibitor 1##NM_024626|VTCN1|79679|V-set domain containing T cell activation inhibitor 1	1.990833	0.0	denovo_WM_7:53:0.897	denovo_WM_7:68:0.925
chr1	153245972	153246152	reg1017516.p1	4.006	+	BC108290 NM_000427	-13884	+	NM_001195571	-56003	+	NM_001010857 BC130507 BC130511 BC087854	-70121	+	BC128114 BC128115 BC069741 BC069798 BC069801 AY035376 NM_052891	37117	-	AY035377 NM_020393 AF242518	74970	-	AK311882 NM_002965 X06233 TSC_hg19_v1_chr1_+_153330329 BC047681 AF086362	84276	+	BC108290|LOR|4014|loricrin##NM_000427|LOR|4014|loricrin##NM_001195571|PRR9|574414|proline rich 9##NM_001010857|LELP1|149018|late cornified envelope-like proline-rich 1##BC130507|LELP1|149018|late cornified envelope-like proline-rich 1##BC130511|LELP1|149018|late cornified envelope-like proline-rich 1##BC087854|LELP1|149018|late cornified envelope-like proline-rich 1##BC128114|PGLYRP3|114771|peptidoglycan recognition protein 3##BC128115|PGLYRP3|114771|peptidoglycan recognition protein 3##BC069741|PGLYRP3|114771|peptidoglycan recognition protein 3##BC069798|PGLYRP3|114771|peptidoglycan recognition protein 3##BC069801|PGLYRP3|114771|peptidoglycan recognition protein 3##AY035376|PGLYRP3|114771|peptidoglycan recognition protein 3##NM_052891|PGLYRP3|114771|peptidoglycan recognition protein 3##AY035377|PGLYRP4|57115|peptidoglycan recognition protein 4##NM_020393|PGLYRP4|57115|peptidoglycan recognition protein 4##AF242518|PGLYRP4|57115|peptidoglycan recognition protein 4##AK311882|S100A9|6280|S100 calcium binding protein A9##NM_002965|S100A9|6280|S100 calcium binding protein A9##X06233|S100A9|6280|S100 calcium binding protein A9##BC047681|S100A9|6280|S100 calcium binding protein A9##AF086362|S100A9|6280|S100 calcium binding protein A9	0.084683	0.0	
chr12	110969582	110969688	reg1012512.p1	4.006	+	AK124109 NM_152442 AK301826 BC037353 AK302512 AY297459 BC068031 BC047645 AK097665	-29560	+	TSC_hg19_v1_chr12_-_110939917 BC015095 AF201946 AF175264 BC000880 AF168716 AF193795 AK129767 BC017964 AB578891 AB618733 AL136614 BC095446 NM_016226 NM_057180 BC032462 AB578892	-29725	-	TSC_hg19_v1_chr12_+_110906672 CR457001 CU676792 DQ891800 DQ894984	-62966	+	TSC_hg19_v1_chr12_-_111020755 AY357944	51158	-	TSC_hg19_v1_chr12_-_111021111 BC111551 AF385435 NM_139283	51435	-	AK124744 TSC_hg19_v1_chr12_-_111021124	51491	-	AK124109|RAD9B|144715|RAD9 homolog B (S. pombe)##NM_152442|RAD9B|144715|RAD9 homolog B (S. pombe)##AK301826|RAD9B|144715|RAD9 homolog B (S. pombe)##BC037353|RAD9B|144715|RAD9 homolog B (S. pombe)##AK302512|RAD9B|144715|RAD9 homolog B (S. pombe)##AY297459|RAD9B|144715|RAD9 homolog B (S. pombe)##BC068031|RAD9B|144715|RAD9 homolog B (S. pombe)##BC047645|RAD9B|144715|RAD9 homolog B (S. pombe)##AK097665|RAD9B|144715|RAD9 homolog B (S. pombe)##BC015095|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF201946|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF175264|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC000880|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF168716|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AF193795|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AK129767|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC017964|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578891|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB618733|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AL136614|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC095446|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_016226|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##NM_057180|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##BC032462|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##AB578892|VPS29|51699|vacuolar protein sorting 29 homolog (S. cerevisiae)##CR457001|C12orf24|29902|chromosome 12 open reading frame 24##DQ891800|C12orf24|29902|chromosome 12 open reading frame 24##DQ894984|C12orf24|29902|chromosome 12 open reading frame 24##AY357944|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##BC111551|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AF385435|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##NM_139283|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)##AK124744|PPTC7|160760|PTC7 protein phosphatase homolog (S. cerevisiae)	0.0	0.0	
chr12	118330384	118330535	reg1009871.p1	4.006	+	AK294435 AF446135 EU753241 U17327 AK307481 NM_000620 NM_001204218	-530951	-	AF446136 TSC_hg19_v1_chr12_-_117799037	-531438	-	NM_001204214	-583245	-	NM_173598	75568	-	NM_001130112 NM_001206801 NM_007370 NM_181578 TSC_hg19_v1_chr12_+_118454507 AK291107 AK094575 AK290685 BC001866 BC013961 AB208992 BC020440 L07540 AB464140 CU674898 CR407651	124109	+	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	168476	-	AK294435|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446135|NOS1|4842|nitric oxide synthase 1 (neuronal)##EU753241|NOS1|4842|nitric oxide synthase 1 (neuronal)##U17327|NOS1|4842|nitric oxide synthase 1 (neuronal)##AK307481|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_000620|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204218|NOS1|4842|nitric oxide synthase 1 (neuronal)##AF446136|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_001204214|NOS1|4842|nitric oxide synthase 1 (neuronal)##NM_173598|KSR2|283455|kinase suppressor of ras 2##NM_001130112|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_001206801|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_007370|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##NM_181578|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK291107|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK094575|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK290685|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC001866|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC013961|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AB208992|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##BC020440|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##L07540|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##CR407651|RFC5|5985|replication factor C (activator 1) 5, 36.5kDa##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2	0.0	0.0	
chr1	43397465	43397576	reg1012902.p1	4.006	+	TSC_hg19_v1_chr1_+_43312304 AK296201	-85215	+	AK095184 TSC_hg19_v1_chr1_+_43312290	-85231	+	TSC_hg19_v1_chr1_+_43312284 AF131739	-85247	+	AB384810 BC118590 BC121804 TSC_hg19_v1_chr1_-_43424504 K03195	26902	-	TSC_hg19_v1_chr1_-_43424540 AK292791 AK293306 AK296736 AK312403 AB208987	27052	-	TSC_hg19_v1_chr1_-_43424834 NM_006516	27320	-	AK296201|ZNF691|51058|zinc finger protein 691##AF131739|ZNF691|51058|zinc finger protein 691##BC118590|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##BC121804|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##K03195|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK292791|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK293306|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK296736|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AK312403|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##AB208987|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1##NM_006516|SLC2A1|6513|solute carrier family 2 (facilitated glucose transporter), member 1	0.992474	0.0	
chr14	77537132	77537264	reg1016460.p2	4.006	+	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-42138	-	AB058768 BC152431 TSC_hg19_v1_chr14_-_77494748	-42514	-	AK058106 NM_194287 AK125722 AK301762 BC062799 BC121159 BC121160	-244403	+	AK124327 TSC_hg19_v1_chr14_-_77542533	5335	-	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	27447	+	BC117676 TSC_hg19_v1_chr14_-_77608072	70817	-	NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AB058768|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##AK058106|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_194287|C14orf166B|145497|chromosome 14 open reading frame 166B##AK125722|C14orf166B|145497|chromosome 14 open reading frame 166B##AK301762|C14orf166B|145497|chromosome 14 open reading frame 166B##BC062799|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121159|C14orf166B|145497|chromosome 14 open reading frame 166B##BC121160|C14orf166B|145497|chromosome 14 open reading frame 166B##NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22	0.0	0.126585	
chr16	30539062	30539148	reg1004019.p1	4.006	+	TSC_hg19_v1_chr16_-_30538096 AK295274	-1023	-	TSC_hg19_v1_chr16_-_30537922 BC013760 NM_024671	-1214	-	AK027089 AK315449 TSC_hg19_v1_chr16_-_30537813 BC092403	-1355	-	TSC_hg19_v1_chr16_-_30546003 AK292192	6895	-	TSC_hg19_v1_chr16_-_30546234 AB209546 AK299308 AK054567 BC001361 NM_023931 AK316254	7085	-	EU446557 BC008821 AK093992 AX748400 NM_001172679 NM_033410 TSC_hg19_v1_chr16_-_30569709	30503	-	AK295274|ZNF768|79724|zinc finger protein 768##BC013760|ZNF768|79724|zinc finger protein 768##NM_024671|ZNF768|79724|zinc finger protein 768##AK027089|ZNF768|79724|zinc finger protein 768##AK315449|ZNF768|79724|zinc finger protein 768##BC092403|ZNF768|79724|zinc finger protein 768##AK292192|ZNF747|65988|zinc finger protein 747##AB209546|ZNF747|65988|zinc finger protein 747##AK054567|ZNF747|65988|zinc finger protein 747##BC001361|ZNF747|65988|zinc finger protein 747##NM_023931|ZNF747|65988|zinc finger protein 747##EU446557|ZNF764|92595|zinc finger protein 764##BC008821|ZNF764|92595|zinc finger protein 764##AK093992|ZNF764|92595|zinc finger protein 764##NM_001172679|ZNF764|92595|zinc finger protein 764##NM_033410|ZNF764|92595|zinc finger protein 764	0.0	0.0	
chr4	89300401	89300467	reg1013813.p2	4.006	+	TSC_hg19_v1_chr4_+_89300147 AK092403 AX747525 BX647121	-268	+	AK295832 TSC_hg19_v1_chr4_+_89300006 BC042047	-437	+	TSC_hg19_v1_chr4_+_89299890 AF336798 AY653201 AY653202 AY653203 NM_001165136 NM_017912	-552	+	TSC_hg19_v1_chr4_+_89378269 AY337518 NM_016323 AB027289 BC140716	77888	+	TSC_hg19_v1_chr4_-_89444916 AB206972 BC007876 AK312082	144487	-	TSC_hg19_v1_chr4_-_89444931 NM_001042616 NM_032906	144518	-	AK092403|HERC6|55008|hect domain and RLD 6##BX647121|HERC6|55008|hect domain and RLD 6##AK295832|HERC6|55008|hect domain and RLD 6##BC042047|HERC6|55008|hect domain and RLD 6##AF336798|HERC6|55008|hect domain and RLD 6##AY653201|HERC6|55008|hect domain and RLD 6##AY653202|HERC6|55008|hect domain and RLD 6##AY653203|HERC6|55008|hect domain and RLD 6##NM_001165136|HERC6|55008|hect domain and RLD 6##NM_017912|HERC6|55008|hect domain and RLD 6##AY337518|HERC5|51191|hect domain and RLD 5##NM_016323|HERC5|51191|hect domain and RLD 5##AB027289|HERC5|51191|hect domain and RLD 5##BC140716|HERC5|51191|hect domain and RLD 5##AB206972|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##BC007876|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##AK312082|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##NM_001042616|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##NM_032906|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y	0.0	0.0	
chr5	63908079	63908259	reg1013399.p2	4.006	+	BC140707 NM_001029875 BX640900	-105688	+	TSC_hg19_v1_chr5_+_63461666 AK090756 AX746601 NM_001113561 NM_178532 BC101277 BC101278 BC101279 AL832580 BC101397	-446488	+	AK314187 TSC_hg19_v1_chr5_-_63258084	-650147	-	NM_001164442 TSC_hg19_v1_chr5_+_63986235	78016	+	TSC_hg19_v1_chr5_-_64064453 BC047006 BC108716 BC127085 BC127086 HM370403 AL832348	156277	-	TSC_hg19_v1_chr5_-_64064491 AK094073 AX748442 NM_173829	156335	-	BC140707|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##NM_001029875|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##BX640900|RGS7BP|401190|regulator of G-protein signaling 7 binding protein##AK090756|RNF180|285671|ring finger protein 180##NM_001113561|RNF180|285671|ring finger protein 180##NM_178532|RNF180|285671|ring finger protein 180##BC101277|RNF180|285671|ring finger protein 180##BC101278|RNF180|285671|ring finger protein 180##BC101279|RNF180|285671|ring finger protein 180##AL832580|RNF180|285671|ring finger protein 180##BC101397|RNF180|285671|ring finger protein 180##AK314187|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##NM_001164442|FAM159B|100132916|family with sequence similarity 159, member B##BC047006|SREK1IP1|285672|SREK1-interacting protein 1##BC108716|SREK1IP1|285672|SREK1-interacting protein 1##BC127085|SREK1IP1|285672|SREK1-interacting protein 1##BC127086|SREK1IP1|285672|SREK1-interacting protein 1##AL832348|SREK1IP1|285672|SREK1-interacting protein 1##AK094073|SREK1IP1|285672|SREK1-interacting protein 1##NM_173829|SREK1IP1|285672|SREK1-interacting protein 1	0.929791	0.0	denovo_WM_7:-33:0.628
chr6	16731952	16732052	reg1003950.p2	4.006	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-493151	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-588692	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-602565	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	29695	-	NM_001190766	370486	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	549852	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr7	55601834	55601922	reg1002250.p2	4.006	+	AK313326 BC070049 AK225958 AJ278245 AB035966 AF353942 TSC_hg19_v1_chr7_+_55433704 AK301747 AK307204 AL713665	-168306	+	AK095857 NM_018697	-168738	+	TSC_hg19_v1_chr7_+_55086922 AY550966 DQ088980 AK290352 GU255993 AB528482 AY698023 AY698024	-514932	+	CR533483 AM393121 TSC_hg19_v1_chr7_-_55640050 AL136610	38162	-	TSC_hg19_v1_chr7_-_55640073 AB097004	38204	-	BC016650 AK314338 TSC_hg19_v1_chr7_-_55640107	38227	-	AK313326|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##BC070049|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK225958|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AJ278245|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AB035966|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AF353942|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK301747|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AL713665|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AK095857|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##NM_018697|LANCL2|55915|LanC lantibiotic synthetase component C-like 2 (bacterial)##AY550966|EGFR|1956|epidermal growth factor receptor##DQ088980|EGFR|1956|epidermal growth factor receptor##AK290352|EGFR|1956|epidermal growth factor receptor##GU255993|EGFR|1956|epidermal growth factor receptor##AY698023|EGFR|1956|epidermal growth factor receptor##AY698024|EGFR|1956|epidermal growth factor receptor##CR533483|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AM393121|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AL136610|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AB097004|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##BC016650|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1##AK314338|VOPP1|81552|vesicular, overexpressed in cancer, prosurvival protein 1	0.999552	0.0	denovo_WM_7:-45:0.740
chr8	17781584	17781685	reg1012003.p2	4.006	+	TSC_hg19_v1_chr8_+_17780529 BC065022 BC027477 BC140946	-1111	+	TSC_hg19_v1_chr8_+_17780501 BC000453	-1129	+	TSC_hg19_v1_chr8_+_17780498 AK307583 BC098391	-1139	+	TSC_hg19_v1_chr8_+_17822094 AF068293	40476	+	TSC_hg19_v1_chr8_+_17829865 AK091406 AX746961 AK302378	48335	+	AB528408 CU677637 DQ891071 DQ894254 U70063 TSC_hg19_v1_chr8_-_17941584 U47674	159942	-	BC065022|PCM1|5108|pericentriolar material 1##BC027477|PCM1|5108|pericentriolar material 1##BC140946|PCM1|5108|pericentriolar material 1##BC000453|PCM1|5108|pericentriolar material 1##AK307583|PCM1|5108|pericentriolar material 1##AF068293|PCM1|5108|pericentriolar material 1##AK091406|PCM1|5108|pericentriolar material 1##AK302378|PCM1|5108|pericentriolar material 1##DQ891071|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##DQ894254|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U70063|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U47674|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1	0.0	0.0	
chr10	67258539	67258605	reg1015363.p1	4.005	+	TSC_hg19_v1_chr10_+_65281212 BC038724 AK289976 AY562241 CU686667	-1977331	+	TSC_hg19_v1_chr10_+_65281156 BC057832 BC010040	-1977410	+	TSC_hg19_v1_chr10_+_65281112 BC068557 NM_001001330	-1977457	+	NM_178011 BX640611 AY358315 BC111492	1427243	+	AK308726 AK289756 AY198183 BC065819 NM_001127384 BC022004 BC030646	2166824	-	AF091606 AK313882 NM_013266	2197365	-	BC038724|REEP3|221035|receptor accessory protein 3##AK289976|REEP3|221035|receptor accessory protein 3##AY562241|REEP3|221035|receptor accessory protein 3##BC057832|REEP3|221035|receptor accessory protein 3##BC010040|REEP3|221035|receptor accessory protein 3##BC068557|REEP3|221035|receptor accessory protein 3##NM_001001330|REEP3|221035|receptor accessory protein 3##NM_178011|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BX640611|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AY358315|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##BC111492|LRRTM3|347731|leucine rich repeat transmembrane neuronal 3##AK308726|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK289756|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AY198183|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC065819|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_001127384|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC022004|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##BC030646|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AF091606|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##AK313882|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3##NM_013266|CTNNA3|29119|catenin (cadherin-associated protein), alpha 3	0.0	0.0	
chr10	94194894	94194998	reg1015557.p2	4.005	+	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	-143892	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	-144110	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-191927	-	AK302578 AK093287 AK316407 AX748033 NM_001165946	62547	-	TSC_hg19_v1_chr10_-_94333800 AB527891 AK312810 BC096336 BC096337 BC096338 BC096339 BC036188	138828	-	TSC_hg19_v1_chr10_-_94333845 M21188	138891	-	AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme##AK312810|IDE|3416|insulin-degrading enzyme##BC096336|IDE|3416|insulin-degrading enzyme##BC096337|IDE|3416|insulin-degrading enzyme##BC096338|IDE|3416|insulin-degrading enzyme##BC096339|IDE|3416|insulin-degrading enzyme##BC036188|IDE|3416|insulin-degrading enzyme##M21188|IDE|3416|insulin-degrading enzyme	0.790604	0.725557	CTCF.p2:8:0.726	denovo_WM_7:-96:0.300	denovo_WM_7:-97:0.291
chr15	72598134	72598251	reg1011944.p1	4.005	+	NM_020214	-34565	-	TSC_hg19_v1_chr15_-_72523728 NM_001206796 NM_001206797 NM_001206798 NM_002654 NM_182470 NM_182471	-74464	-	TSC_hg19_v1_chr15_-_72523565 AK307855	-74625	-	AK294382 NM_001172685	463	-	AK124858 TSC_hg19_v1_chr15_-_72612227 AK296004 BC030835	13985	-	TSC_hg19_v1_chr15_-_72612248 AF425606 AK308073 NM_001172684	14074	-	NM_020214|PARP6|56965|poly (ADP-ribose) polymerase family, member 6##NM_001206796|PKM2|5315|pyruvate kinase, muscle##NM_001206797|PKM2|5315|pyruvate kinase, muscle##NM_001206798|PKM2|5315|pyruvate kinase, muscle##NM_002654|PKM2|5315|pyruvate kinase, muscle##NM_182470|PKM2|5315|pyruvate kinase, muscle##NM_182471|PKM2|5315|pyruvate kinase, muscle##AK307855|PKM2|5315|pyruvate kinase, muscle##AK294382|CELF6|60677|CUGBP, Elav-like family member 6##NM_001172685|CELF6|60677|CUGBP, Elav-like family member 6##AK124858|CELF6|60677|CUGBP, Elav-like family member 6##AK296004|CELF6|60677|CUGBP, Elav-like family member 6##BC030835|CELF6|60677|CUGBP, Elav-like family member 6##AF425606|CELF6|60677|CUGBP, Elav-like family member 6##NM_001172684|CELF6|60677|CUGBP, Elav-like family member 6	0.99547	0.0	denovo_WM_7:11:0.948
chr2	182856542	182856645	reg1010559.p2	4.005	+	NM_001080545 AK129898 AF494535 BX647581 BC017943	-5944	+	TSC_hg19_v1_chr2_+_182756689 BC052581 BC064499 BC028706 AK291745 BX647257 AB116937 AB385517 BX647967 AK304238 BX648888	-99800	+	TSC_hg19_v1_chr2_+_182756494 NM_001130445 NM_006751 AK093143 AX747951 AB067514	-100062	+	AK295657 AB384753 DQ892369 DQ893372 DQ895578 DQ896694 AF110237 NM_005019 BC022480 AF110240 AF110236 NM_001003683 U40370 AK294239	530691	-	TSC_hg19_v1_chr2_+_183580986 AL832632 AK027647 NM_018981 AY358577 AF490904 AK027696 BC070034 BC117299 BC126168 AF038503	724481	+	TSC_hg19_v1_chr2_+_183582683 BC107425 AF314529 AY089971 HQ258514 HQ258651 AL832646 AK027450	726154	+	NM_001080545|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AK129898|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##AF494535|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BX647581|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BC017943|PPP1R1C|151242|protein phosphatase 1, regulatory (inhibitor) subunit 1C##BC052581|SSFA2|6744|sperm specific antigen 2##BC064499|SSFA2|6744|sperm specific antigen 2##BC028706|SSFA2|6744|sperm specific antigen 2##AK291745|SSFA2|6744|sperm specific antigen 2##BX647257|SSFA2|6744|sperm specific antigen 2##AB116937|SSFA2|6744|sperm specific antigen 2##BX647967|SSFA2|6744|sperm specific antigen 2##AK304238|SSFA2|6744|sperm specific antigen 2##BX648888|SSFA2|6744|sperm specific antigen 2##NM_001130445|SSFA2|6744|sperm specific antigen 2##NM_006751|SSFA2|6744|sperm specific antigen 2##AB067514|SSFA2|6744|sperm specific antigen 2##AK295657|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ892369|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ893372|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ895578|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##DQ896694|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AF110237|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##NM_005019|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##BC022480|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AF110236|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##NM_001003683|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##U40370|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AK294239|PDE1A|5136|phosphodiesterase 1A, calmodulin-dependent##AL832632|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027647|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##NM_018981|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AY358577|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF490904|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027696|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC070034|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC117299|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC126168|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF038503|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##BC107425|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AF314529|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AY089971|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##HQ258514|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##HQ258651|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AL832646|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10##AK027450|DNAJC10|54431|DnaJ (Hsp40) homolog, subfamily C, member 10	0.035187	0.0	
chr6	37992287	37992368	reg1017699.p1	4.005	+	TSC_hg19_v1_chr6_+_37787655 AK023284 BC031481 DQ891133 DQ894312	-204637	+	TSC_hg19_v1_chr6_+_37787274 NM_021943	-205037	+	TSC_hg19_v1_chr6_-_37665660 AF478693 NM_153487	-326621	-	BC101354 BC101355 BC101356 BC101357 AK057507 NM_001172418 NM_152733	571475	-	AB067467 TSC_hg19_v1_chr6_-_38607611	615278	-	TSC_hg19_v1_chr6_-_38607697 BX537534	615339	-	AK023284|ZFAND3|60685|zinc finger, AN1-type domain 3##BC031481|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ891133|ZFAND3|60685|zinc finger, AN1-type domain 3##DQ894312|ZFAND3|60685|zinc finger, AN1-type domain 3##NM_021943|ZFAND3|60685|zinc finger, AN1-type domain 3##AF478693|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_153487|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##BC101354|BTBD9|114781|BTB (POZ) domain containing 9##BC101355|BTBD9|114781|BTB (POZ) domain containing 9##BC101356|BTBD9|114781|BTB (POZ) domain containing 9##BC101357|BTBD9|114781|BTB (POZ) domain containing 9##AK057507|BTBD9|114781|BTB (POZ) domain containing 9##NM_001172418|BTBD9|114781|BTB (POZ) domain containing 9##NM_152733|BTBD9|114781|BTB (POZ) domain containing 9##AB067467|BTBD9|114781|BTB (POZ) domain containing 9##BX537534|BTBD9|114781|BTB (POZ) domain containing 9	0.995647	0.97651	CTCF.p2:-15:0.977	denovo_WM_7:-69:0.996
chr10	22946867	22946975	reg1013574.p2	4.004	+	TSC_hg19_v1_chr10_+_22726003 AK295718	-220922	+	NM_001253854 NM_001253855 NM_012443 NM_172242 TSC_hg19_v1_chr10_+_22634449 AK302194 AF079363 AK310247 AK289903 AL080136 BC030585 AM392674 AM392698 AB527223 DQ890916 DQ894067 CR533552	-312465	+	NM_005180 BC011652 TSC_hg19_v1_chr10_+_22610179 L13689	-336756	+	AK294817 TSC_hg19_v1_chr10_-_23003038	56116	-	TSC_hg19_v1_chr10_-_23003504 BC018034 NM_005028	56569	-	NM_173081 BC039312 AK302985 AY436643 AK302104 AK057389	270060	+	AK295718|LOC100289455|100289455|uncharacterized LOC100289455##NM_001253854|SPAG6|9576|sperm associated antigen 6##NM_001253855|SPAG6|9576|sperm associated antigen 6##NM_012443|SPAG6|9576|sperm associated antigen 6##NM_172242|SPAG6|9576|sperm associated antigen 6##AK302194|SPAG6|9576|sperm associated antigen 6##AF079363|SPAG6|9576|sperm associated antigen 6##AK310247|SPAG6|9576|sperm associated antigen 6##AK289903|SPAG6|9576|sperm associated antigen 6##AL080136|SPAG6|9576|sperm associated antigen 6##BC030585|SPAG6|9576|sperm associated antigen 6##AM392674|SPAG6|9576|sperm associated antigen 6##AM392698|SPAG6|9576|sperm associated antigen 6##DQ890916|SPAG6|9576|sperm associated antigen 6##DQ894067|SPAG6|9576|sperm associated antigen 6##CR533552|SPAG6|9576|sperm associated antigen 6##NM_005180|BMI1|648|BMI1 polycomb ring finger oncogene##BC011652|BMI1|648|BMI1 polycomb ring finger oncogene##L13689|BMI1|648|BMI1 polycomb ring finger oncogene##AK294817|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##BC018034|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_005028|PIP4K2A|5305|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha##NM_173081|ARMC3|219681|armadillo repeat containing 3##BC039312|ARMC3|219681|armadillo repeat containing 3##AK302985|ARMC3|219681|armadillo repeat containing 3##AY436643|ARMC3|219681|armadillo repeat containing 3##AK302104|ARMC3|219681|armadillo repeat containing 3##AK057389|ARMC3|219681|armadillo repeat containing 3	0.0	0.0	
chr12	25486968	25487128	reg1010256.p2	4.004	+	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-83107	-	TSC_hg19_v1_chr12_-_25403822 BC013572	-83233	-	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-138842	+	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	219148	-	AK296816 NM_001145727	314439	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	624953	+	AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	1.036241	0.0	denovo_WM_7:97:0.313	denovo_WM_7:98:0.313	denovo_WM_7:99:0.313
chr19	11390807	11390987	reg1010960.p2	4.004	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-17759	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-40601	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-82435	-	AF133424 NM_012466 BC029908	15936	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	59403	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	66036	-	AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205	1.979244	0.0	denovo_WM_7:36:0.950	denovo_WM_7:51:0.958
chr2	42949768	42949944	reg1016691.p2	4.004	+	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-153959	+	TSC_hg19_v1_chr2_+_42795781 BC053631 NM_020744 BC004227	-154135	+	TSC_hg19_v1_chr2_+_42721701 AK127245	-228154	+	AY158687 AB528920 AB083055 BC063549 NM_148962	41444	-	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	69895	-	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	503489	-	AK027304|MTA3|57504|metastasis associated 1 family, member 3##BC053631|MTA3|57504|metastasis associated 1 family, member 3##NM_020744|MTA3|57504|metastasis associated 1 family, member 3##BC004227|MTA3|57504|metastasis associated 1 family, member 3##AK127245|MTA3|57504|metastasis associated 1 family, member 3##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.713243	0.0	denovo_WM_7:-75:0.582
chr5	145561326	145561506	reg1010539.p2	4.004	+	U56252 TSC_hg19_v1_chr5_-_145523016	-38407	-	HQ258084 BC130586 BC130588 BC144387 BC144388 BC144389 BC144392 NM_001029869	-77505	-	TSC_hg19_v1_chr5_+_145317317 AL833297	-244048	+	TSC_hg19_v1_chr5_-_145562187 BC131798 BC110084 D84223 BC151214 AK304134 BC068041 AK293750 AK025441 AK295874 AF151026 BC105581 AK315178 BC150213	723	-	TSC_hg19_v1_chr5_-_145562214 AB037773 BC152422	805	-	TSC_hg19_v1_chr5_-_145562236 NM_020117	848	-	U56252|LARS|51520|leucyl-tRNA synthetase##HQ258084|PLAC8L1|153770|PLAC8-like 1##BC130586|PLAC8L1|153770|PLAC8-like 1##BC130588|PLAC8L1|153770|PLAC8-like 1##BC144387|PLAC8L1|153770|PLAC8-like 1##BC144388|PLAC8L1|153770|PLAC8-like 1##BC144389|PLAC8L1|153770|PLAC8-like 1##BC144392|PLAC8L1|153770|PLAC8-like 1##NM_001029869|PLAC8L1|153770|PLAC8-like 1##AL833297|SH3RF2|153769|SH3 domain containing ring finger 2##BC131798|LARS|51520|leucyl-tRNA synthetase##BC110084|LARS|51520|leucyl-tRNA synthetase##D84223|LARS|51520|leucyl-tRNA synthetase##BC151214|LARS|51520|leucyl-tRNA synthetase##AK304134|LARS|51520|leucyl-tRNA synthetase##BC068041|LARS|51520|leucyl-tRNA synthetase##AK293750|LARS|51520|leucyl-tRNA synthetase##AK025441|LARS|51520|leucyl-tRNA synthetase##AK295874|LARS|51520|leucyl-tRNA synthetase##AF151026|LARS|51520|leucyl-tRNA synthetase##BC105581|LARS|51520|leucyl-tRNA synthetase##AK315178|LARS|51520|leucyl-tRNA synthetase##BC150213|LARS|51520|leucyl-tRNA synthetase##AB037773|LARS|51520|leucyl-tRNA synthetase##BC152422|LARS|51520|leucyl-tRNA synthetase##NM_020117|LARS|51520|leucyl-tRNA synthetase	2.167677	0.0	denovo_WM_7:3:0.483	denovo_WM_7:4:0.242	denovo_WM_7:18:0.310	denovo_WM_7:19:0.551
chr7	30501975	30502105	reg1009497.p1	4.004	+	TSC_hg19_v1_chr7_+_30324634 AY054122	-177384	+	TSC_hg19_v1_chr7_+_30324515 AF527533	-177491	+	AF513707 NM_147128	-178118	+	AY128682 AY128683 AY128684 AY128685 AY128686 AF113925 BC040339 AK300367 AK023969 NM_006092	16281	-	CU674304 TSC_hg19_v1_chr7_-_30544445 BC013937 BC005356 AK315608 BC019243 BC000625 NM_001199815 NM_001199816 NM_001199817 NM_024051	42361	-	NM_002047	132140	+	AY054122|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AY128682|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128683|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128684|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128685|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AY128686|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AF113925|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC040339|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK300367|NOD1|10392|nucleotide-binding oligomerization domain containing 1##AK023969|NOD1|10392|nucleotide-binding oligomerization domain containing 1##NM_006092|NOD1|10392|nucleotide-binding oligomerization domain containing 1##BC013937|GGCT|79017|gamma-glutamylcyclotransferase##BC005356|GGCT|79017|gamma-glutamylcyclotransferase##AK315608|GGCT|79017|gamma-glutamylcyclotransferase##BC019243|GGCT|79017|gamma-glutamylcyclotransferase##BC000625|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199815|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199816|GGCT|79017|gamma-glutamylcyclotransferase##NM_001199817|GGCT|79017|gamma-glutamylcyclotransferase##NM_024051|GGCT|79017|gamma-glutamylcyclotransferase##NM_002047|GARS|2617|glycyl-tRNA synthetase	1.473939	0.0	denovo_WM_7:10:0.496	denovo_WM_7:11:0.496	denovo_WM_7:27:0.305
chr9	37409361	37409541	reg1015803.p1	4.004	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-288868	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-288943	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-288965	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	13255	+	BC010007 TSC_hg19_v1_chr9_-_37465267	55809	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	55944	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.0	0.0	
chr1	209826238	209826387	reg1017243.p1	4.003	+	TSC_hg19_v1_chr1_-_209825820 BC058922 NM_000228	-488	-	L25541 NM_001127641 D37766 TSC_hg19_v1_chr1_-_209825771 AK296851 AK309524	-588	-	TSC_hg19_v1_chr1_-_209824718 NM_001017402	-1633	-	TSC_hg19_v1_chr1_+_209848757 NM_015714 BC009694	22412	+	TSC_hg19_v1_chr1_+_209848994 BT007101 CR542179 CR542193 DQ894610 EU176279	22699	+	NM_001206741 NM_181755	33212	+	BC058922|LAMB3|3914|laminin, beta 3##NM_000228|LAMB3|3914|laminin, beta 3##L25541|LAMB3|3914|laminin, beta 3##NM_001127641|LAMB3|3914|laminin, beta 3##D37766|LAMB3|3914|laminin, beta 3##AK296851|LAMB3|3914|laminin, beta 3##AK309524|LAMB3|3914|laminin, beta 3##NM_001017402|LAMB3|3914|laminin, beta 3##NM_015714|G0S2|50486|G0/G1switch 2##BC009694|G0S2|50486|G0/G1switch 2##BT007101|G0S2|50486|G0/G1switch 2##CR542179|G0S2|50486|G0/G1switch 2##CR542193|G0S2|50486|G0/G1switch 2##DQ894610|G0S2|50486|G0/G1switch 2##EU176279|G0S2|50486|G0/G1switch 2##NM_001206741|HSD11B1|3290|hydroxysteroid (11-beta) dehydrogenase 1##NM_181755|HSD11B1|3290|hydroxysteroid (11-beta) dehydrogenase 1	0.907068	0.0	denovo_WM_7:-4:0.261	denovo_WM_7:-5:0.621
chr19	6772292	6772425	reg1017283.p1	4.003	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-4851	-	TSC_hg19_v1_chr19_+_6739712 NM_004240 AK313296 AB007845 AB072596 AK223109 AF502289 AJ000414 AY081141 BC013002 CU680464 DQ892747 DQ895993 AF380114 BT006698 BT020167 BT020171 CR536513	-32624	+	TSC_hg19_v1_chr19_-_6737615 BC146909 AX775899 NM_001080452	-34740	-	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	366	+	TSC_hg19_v1_chr19_+_6772811 AB590871	450	+	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	115239	+	AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##NM_004240|TRIP10|9322|thyroid hormone receptor interactor 10##AK313296|TRIP10|9322|thyroid hormone receptor interactor 10##AB007845|TRIP10|9322|thyroid hormone receptor interactor 10##AB072596|TRIP10|9322|thyroid hormone receptor interactor 10##AK223109|TRIP10|9322|thyroid hormone receptor interactor 10##AF502289|TRIP10|9322|thyroid hormone receptor interactor 10##AJ000414|TRIP10|9322|thyroid hormone receptor interactor 10##AY081141|TRIP10|9322|thyroid hormone receptor interactor 10##BC013002|TRIP10|9322|thyroid hormone receptor interactor 10##DQ892747|TRIP10|9322|thyroid hormone receptor interactor 10##DQ895993|TRIP10|9322|thyroid hormone receptor interactor 10##AF380114|TRIP10|9322|thyroid hormone receptor interactor 10##BT006698|TRIP10|9322|thyroid hormone receptor interactor 10##BT020167|TRIP10|9322|thyroid hormone receptor interactor 10##BT020171|TRIP10|9322|thyroid hormone receptor interactor 10##CR536513|TRIP10|9322|thyroid hormone receptor interactor 10##BC146909|GPR108|56927|G protein-coupled receptor 108##AX775899|GPR108|56927|G protein-coupled receptor 108##NM_001080452|GPR108|56927|G protein-coupled receptor 108##NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1	0.0	0.041228	
chr2	65585135	65585282	reg1009224.p1	4.003	+	NM_001005386 NM_005722 TSC_hg19_v1_chr2_+_65454944 AK295157 AK301634 BC014546 BX649080 AF006082 AK315205 AB462954 EU831978 EU832071	-130273	+	TSC_hg19_v1_chr2_-_65454728 AK055581	-130472	-	TSC_hg19_v1_chr2_-_65357263 NM_004161 NM_015543	-227867	-	TSC_hg19_v1_chr2_-_65593766 AK299079	8565	-	TSC_hg19_v1_chr2_-_65593867 NM_001128210	8690	-	AK307714 AB590946 HQ258249 TSC_hg19_v1_chr2_-_65659192 AK056479 BC130292 BC136334 AY299090	74004	-	NM_001005386|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##NM_005722|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK295157|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK301634|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BC014546|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##BX649080|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AF006082|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK315205|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU831978|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##EU832071|ACTR2|10097|ARP2 actin-related protein 2 homolog (yeast)##AK055581|LOC729324|729324|hCG1986447##NM_004161|RAB1A|5861|RAB1A, member RAS oncogene family##NM_015543|RAB1A|5861|RAB1A, member RAS oncogene family##AK299079|SPRED2|200734|sprouty-related, EVH1 domain containing 2##NM_001128210|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK307714|SPRED2|200734|sprouty-related, EVH1 domain containing 2##HQ258249|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AK056479|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC130292|SPRED2|200734|sprouty-related, EVH1 domain containing 2##BC136334|SPRED2|200734|sprouty-related, EVH1 domain containing 2##AY299090|SPRED2|200734|sprouty-related, EVH1 domain containing 2	0.0	0.0	
chr3	21487673	21487814	reg1011792.p1	4.003	+	AB193056 AB193057 AB193058 AB193059 AB193060 AB193061 AB193062 AB193063 AB193064 AB193065 AB193066 TSC_hg19_v1_chr3_-_20227699 AB187577 AB187578 AB187579 AB187580 AB187581 AB187582 AB567656 AB567657 BC017867 BX648516 NM_001012409 NM_001012410 NM_001012411 NM_001012412 NM_001012413 NM_138484 AK308095 NM_001199251 NM_001199252 NM_001199253 NM_001199254 NM_001199255 NM_001199256 NM_001199257	-1260069	-	BC070075 TSC_hg19_v1_chr3_+_20081907 BC060823 AB527402	-1405833	+	NM_003884 U57317	-1406220	+	AK026072 NM_024697	305072	-	AK310298 TSC_hg19_v1_chr3_-_22414124	926391	-	TSC_hg19_v1_chr3_+_23244600 AK307075	1756840	+	AB193056|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193057|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193058|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193059|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193060|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193061|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193062|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193063|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193064|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193065|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB193066|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187577|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187578|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187579|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187580|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187581|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB187582|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567656|SGOL1|151648|shugoshin-like 1 (S. pombe)##AB567657|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC017867|SGOL1|151648|shugoshin-like 1 (S. pombe)##BX648516|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012409|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012410|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012411|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012412|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001012413|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_138484|SGOL1|151648|shugoshin-like 1 (S. pombe)##AK308095|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199251|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199252|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199253|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199254|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199255|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199256|SGOL1|151648|shugoshin-like 1 (S. pombe)##NM_001199257|SGOL1|151648|shugoshin-like 1 (S. pombe)##BC070075|KAT2B|8850|K(lysine) acetyltransferase 2B##BC060823|KAT2B|8850|K(lysine) acetyltransferase 2B##NM_003884|KAT2B|8850|K(lysine) acetyltransferase 2B##U57317|KAT2B|8850|K(lysine) acetyltransferase 2B##AK026072|ZNF385D|79750|zinc finger protein 385D##NM_024697|ZNF385D|79750|zinc finger protein 385D##AK310298|ZNF385D|79750|zinc finger protein 385D##AK307075|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2	0.0	0.0	
chr4	103788960	103789111	reg1007162.p1	4.003	+	TSC_hg19_v1_chr4_-_103748970 BC037894 NM_003340 NM_181886 NM_181888 BC003395 AK315775 NM_181889	-39899	-	TSC_hg19_v1_chr4_-_103748709 BC066917 NM_181887 NM_181891 AL833414	-40349	-	AK095822 TSC_hg19_v1_chr4_-_103748316 NM_181892	-40739	-	NM_181893 NM_181890	981	-	TSC_hg19_v1_chr4_+_103790148 NM_001008388	1117	+	TSC_hg19_v1_chr4_+_103790197 AK292134 BC020831 BX537971 BC032300 AM392809 AM393385	1181	+	BC037894|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_003340|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181886|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181888|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##BC003395|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AK315775|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181889|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##BC066917|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181887|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181891|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AL833414|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##AK095822|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181892|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181893|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_181890|UBE2D3|7323|ubiquitin-conjugating enzyme E2D 3##NM_001008388|CISD2|493856|CDGSH iron sulfur domain 2##AK292134|CISD2|493856|CDGSH iron sulfur domain 2##BC020831|CISD2|493856|CDGSH iron sulfur domain 2##BX537971|CISD2|493856|CDGSH iron sulfur domain 2##BC032300|CISD2|493856|CDGSH iron sulfur domain 2##AM392809|CISD2|493856|CDGSH iron sulfur domain 2##AM393385|CISD2|493856|CDGSH iron sulfur domain 2	0.0	0.0	
chr7	6144364	6144430	reg1015034.p2	4.003	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-45550	-	TSC_hg19_v1_chr7_-_6098807 AF255050	-45592	-	TSC_hg19_v1_chr7_-_6098780 AM392648 AM393276 CU675439 AF100784 AF183414 AL136563 AL834494 AF181071 AB037790 AF147094 AK075192 BC006524 AK290327 AK295712	-45664	-	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	146	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	201	+	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	167834	-	NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF255050|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AM392648|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AM393276|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF100784|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF183414|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AL136563|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AL834494|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AB037790|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AF147094|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AK075192|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##BC006524|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AK290327|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##AK295712|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3	0.0	0.140596	
chr11	2440789	2440958	reg1006947.p1	4.002	+	AF125568 NM_005706	-17351	+	TSC_hg19_v1_chr11_+_2421990 BC006091	-18877	+	TSC_hg19_v1_chr11_+_2398543 NM_004356 BC093047 M33680	-42326	+	AJ270996 BC093787 BC093789 BC143351 BC143353 AF177473 NM_014555	3384	-	TSC_hg19_v1_chr11_+_2466237 AF000571 NM_000218 EF010934 AB464057 AY114213 U86146	25376	+	BC007733 TSC_hg19_v1_chr11_-_2560881	119974	-	AF125568|TSSC4|10078|tumor suppressing subtransferable candidate 4##NM_005706|TSSC4|10078|tumor suppressing subtransferable candidate 4##BC006091|TSSC4|10078|tumor suppressing subtransferable candidate 4##NM_004356|CD81|975|CD81 molecule##BC093047|CD81|975|CD81 molecule##M33680|CD81|975|CD81 molecule##AJ270996|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC093787|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC093789|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC143351|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC143353|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##AF177473|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##NM_014555|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##AF000571|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##NM_000218|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##EF010934|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##AY114213|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##U86146|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1	0.991524	0.0	denovo_WM_7:-9:0.248	denovo_WM_7:-10:0.248	denovo_WM_7:-11:0.248	denovo_WM_7:-12:0.248
chr2	13671887	13671970	reg1011557.p2	4.002	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-813531	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-814012	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-814675	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1100893	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1100923	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2029501	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	0.97529	0.0	denovo_WM_7:-23:0.888
chr3	49522831	49522897	reg1014065.p1	4.002	+	TSC_hg19_v1_chr3_+_49507721 NM_001165928 NM_001177634 NM_001177635 NM_001177636 NM_001177637 NM_001177638 NM_001177639 NM_001177640 NM_001177641 NM_001177642 NM_001177644 NM_004393 L19711 BC012740 BC014616 AK291692	-15073	+	TSC_hg19_v1_chr3_+_49506079 NM_001177643	-16757	+	TSC_hg19_v1_chr3_-_49466744 AK313073 NM_032316 AK301846	-56112	-	TSC_hg19_v1_chr3_+_49547870 DQ893491 DQ896435	25053	+	AK297802 TSC_hg19_v1_chr3_+_49568448	45545	+	TSC_hg19_v1_chr3_+_49591913 AF052224 NM_003458	69052	+	NM_001165928|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177634|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177635|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177636|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177637|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177638|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177639|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177640|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177641|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177642|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177644|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_004393|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##L19711|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC012740|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC014616|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK291692|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177643|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK313073|NICN1|84276|nicolin 1##NM_032316|NICN1|84276|nicolin 1##AK301846|NICN1|84276|nicolin 1##DQ893491|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ896435|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK297802|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AF052224|BSN|8927|bassoon (presynaptic cytomatrix protein)##NM_003458|BSN|8927|bassoon (presynaptic cytomatrix protein)	0.0	0.0	
chr4	2765949	2766129	reg1001881.p1	4.002	+	AB590678 TSC_hg19_v1_chr4_-_2758064 AJ304866 BC002740 AK096296 AF372839 NM_024309	-7976	-	AK026176 NM_001161527	-8289	-	AB000459 AB000460 AB000461 NM_003704 BC136646 BC144337 BC144339 BC144340	-138866	+	TSC_hg19_v1_chr4_+_2794755 AK225497 NM_001122681 BC022996	28696	+	AK312286 TSC_hg19_v1_chr4_+_2794811 AK307106	28783	+	NM_001145855 TSC_hg19_v1_chr4_+_2813962	47915	+	AJ304866|TNIP2|79155|TNFAIP3 interacting protein 2##BC002740|TNIP2|79155|TNFAIP3 interacting protein 2##AK096296|TNIP2|79155|TNFAIP3 interacting protein 2##AF372839|TNIP2|79155|TNFAIP3 interacting protein 2##NM_024309|TNIP2|79155|TNFAIP3 interacting protein 2##AK026176|TNIP2|79155|TNFAIP3 interacting protein 2##NM_001161527|TNIP2|79155|TNFAIP3 interacting protein 2##AB000459|FAM193A|8603|family with sequence similarity 193, member A##AB000460|FAM193A|8603|family with sequence similarity 193, member A##AB000461|FAM193A|8603|family with sequence similarity 193, member A##NM_003704|FAM193A|8603|family with sequence similarity 193, member A##BC136646|FAM193A|8603|family with sequence similarity 193, member A##BC144337|FAM193A|8603|family with sequence similarity 193, member A##BC144339|FAM193A|8603|family with sequence similarity 193, member A##BC144340|FAM193A|8603|family with sequence similarity 193, member A##AK225497|SH3BP2|6452|SH3-domain binding protein 2##NM_001122681|SH3BP2|6452|SH3-domain binding protein 2##BC022996|SH3BP2|6452|SH3-domain binding protein 2##AK312286|SH3BP2|6452|SH3-domain binding protein 2##AK307106|SH3BP2|6452|SH3-domain binding protein 2##NM_001145855|SH3BP2|6452|SH3-domain binding protein 2	0.0	0.300129	CTCF.p2:-30:0.300
chr5	43031508	43031648	reg1012456.p2	4.002	+	TSC_hg19_v1_chr5_-_42993436 AK056817	-38132	-	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-219587	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-274640	+	AB463523 BC067873 AY032883 NM_001014279	8718	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	89423	+	TSC_hg19_v1_chr5_+_43121609 AK299315 AK307977	90036	+	AK056817|FLJ32255|643977|uncharacterized LOC643977##Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131##AK299315|ZNF131|7690|zinc finger protein 131##AK307977|ZNF131|7690|zinc finger protein 131	0.997473	0.0	denovo_WM_7:-78:0.449	denovo_WM_7:-79:0.449
chr6	73399120	73399300	reg1001535.p2	4.002	+	TSC_hg19_v1_chr6_+_73331998 AF202977 AF263835	-67149	+	AF249278 BC050689 BC117359 BC143554 BC143555 TSC_hg19_v1_chr6_+_73331968 AK299550	-67321	+	NM_001160130 NM_001160132 NM_001160133 NM_001160134 NM_019842	-67640	+	BC004267 NM_001126063	535964	-	TSC_hg19_v1_chr6_-_73972815 BC022080 NM_030568 AK054891	573656	-	TSC_hg19_v1_chr6_+_73972992 BC031876 AK094485	573763	+	AF202977|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF263835|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AF249278|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC050689|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC117359|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143554|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC143555|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##AK299550|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160130|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160132|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160133|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_001160134|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##NM_019842|KCNQ5|56479|potassium voltage-gated channel, KQT-like subfamily, member 5##BC004267|KHDC1L|100129128|KH homology domain containing 1-like##NM_001126063|KHDC1L|100129128|KH homology domain containing 1-like##BC022080|KHDC1|80759|KH homology domain containing 1##NM_030568|KHDC1|80759|KH homology domain containing 1	0.0	0.0	
chr9	113532231	113532307	reg1014656.p1	4.002	+	NM_001166280 NM_001166281 NM_005592 AF006464 BC109098 BC109099 EU832778 EU832779 GQ129313	-101153	+	TSC_hg19_v1_chr9_-_113342011 AJ619977 AY243503 AK122605 BC030816 NM_153366	-190205	-	HQ258720 AF305830 BC130549 BC130551 BC144461 BC035743 NM_001003936	-432169	-	AK299279 TSC_hg19_v1_chr9_-_113800499 BC036034 AK022808 NM_001401 NM_057159	268143	-	AK298590 TSC_hg19_v1_chr9_-_113801086	268764	-	TSC_hg19_v1_chr9_-_113801481 AK290287	269233	-	NM_001166280|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##NM_001166281|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##NM_005592|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##AF006464|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##BC109098|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##BC109099|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##EU832778|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##EU832779|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##GQ129313|MUSK|4593|muscle, skeletal, receptor tyrosine kinase##AJ619977|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##AY243503|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##AK122605|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##BC030816|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##NM_153366|SVEP1|79987|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1##HQ258720|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##AF305830|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC130549|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC130551|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC144461|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##BC035743|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##NM_001003936|TXNDC8|255220|thioredoxin domain containing 8 (spermatozoa)##AK299279|LPAR1|1902|lysophosphatidic acid receptor 1##BC036034|LPAR1|1902|lysophosphatidic acid receptor 1##AK022808|LPAR1|1902|lysophosphatidic acid receptor 1##NM_001401|LPAR1|1902|lysophosphatidic acid receptor 1##NM_057159|LPAR1|1902|lysophosphatidic acid receptor 1##AK298590|LPAR1|1902|lysophosphatidic acid receptor 1##AK290287|LPAR1|1902|lysophosphatidic acid receptor 1	0.018965	0.0	
chr10	75519008	75519166	reg1004383.p2	4.001	+	TSC_hg19_v1_chr10_+_75504148 AL832110 AK299826 AK309918	-14921	+	AK303085 AK298598 TSC_hg19_v1_chr10_+_75504129 NM_004922 NM_198597 AK316451 BC018928	-14956	+	TSC_hg19_v1_chr10_-_75490231 BC020053 BC046139 BC063124 BC099910 AK294783	-28843	-	TSC_hg19_v1_chr10_+_75532064 BC036037 NM_173540 BC100994 BC100995 BC100996 BC100997	12966	+	TSC_hg19_v1_chr10_+_75532065 AK314944 DQ894378 EU176260	12990	+	TSC_hg19_v1_chr10_+_75532277 AK095482	13199	+	AL832110|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK299826|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK309918|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK303085|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK298598|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##NM_004922|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##NM_198597|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##AK316451|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##BC018928|SEC24C|9632|SEC24 family, member C (S. cerevisiae)##BC046139|BMS1P4|729096|BMS1 pseudogene 4##BC063124|BMS1P4|729096|BMS1 pseudogene 4##BC099910|BMS1P4|729096|BMS1 pseudogene 4##AK294783|BMS1P4|729096|BMS1 pseudogene 4##BC036037|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##NM_173540|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100994|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100995|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100996|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##BC100997|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##AK314944|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##DQ894378|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##EU176260|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)##AK095482|FUT11|170384|fucosyltransferase 11 (alpha (1,3) fucosyltransferase)	0.0	0.0	
chr1	18608039	18608147	reg1013384.p2	4.001	+	TSC_hg19_v1_chr1_+_18434291 AK075316 NM_032880 BC007618	-173816	+	AK057339 NM_030812 BC028909 U20582	-526247	+	AK092020 AX747316 AK300264 TSC_hg19_v1_chr1_+_17944871	-663228	+	NM_152375	199330	+	NM_001135254 NM_002584 NM_013945 X96743	349406	+	NM_152232 AB527225	578062	-	AK075316|IGSF21|84966|immunoglobin superfamily, member 21##NM_032880|IGSF21|84966|immunoglobin superfamily, member 21##BC007618|IGSF21|84966|immunoglobin superfamily, member 21##AK057339|ACTL8|81569|actin-like 8##NM_030812|ACTL8|81569|actin-like 8##BC028909|ACTL8|81569|actin-like 8##U20582|ACTL8|81569|actin-like 8##AK092020|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##AK300264|ARHGEF10L|55160|Rho guanine nucleotide exchange factor (GEF) 10-like##NM_152375|KLHDC7A|127707|kelch domain containing 7A##NM_001135254|PAX7|5081|paired box 7##NM_002584|PAX7|5081|paired box 7##NM_013945|PAX7|5081|paired box 7##X96743|PAX7|5081|paired box 7##NM_152232|TAS1R2|80834|taste receptor, type 1, member 2	0.998997	0.0	denovo_WM_7:-23:0.310	denovo_WM_7:-24:0.310	denovo_WM_7:-25:0.310
chr12	96896438	96896556	reg1004423.p2	4.001	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-102180	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	-102514	-	TSC_hg19_v1_chr12_+_96588254 BC017371	-308230	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	404534	+	BC027605 NM_001135175	404746	+	TSC_hg19_v1_chr12_-_98897622 AK126817	2001130	-	AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK126817|LOC643770|643770|uncharacterized LOC643770	0.0	0.0	
chr19	50417882	50418005	reg1013001.p2	4.001	+	CR541721 CU678568 CU690780 AM393785 DQ892591 DQ896857 AB463152 TSC_hg19_v1_chr19_-_50413102 BC014842	-4841	-	AK074097 BC064378 BC090852 TSC_hg19_v1_chr19_-_50400148 AF293462 AY358933 NM_152899	-17790	-	TSC_hg19_v1_chr19_+_50381392 AK090606 AX746531	-36485	+	NM_012068 AK290592	14045	+	NM_001193646 AK091985 AB021663 AK024402 TSC_hg19_v1_chr19_+_50432461 AB073613 BC005174	14491	+	AJ880387 TSC_hg19_v1_chr19_-_50432664 AJ880386	14714	-	CR541721|NUP62|23636|nucleoporin 62kDa##AM393785|NUP62|23636|nucleoporin 62kDa##DQ892591|NUP62|23636|nucleoporin 62kDa##DQ896857|NUP62|23636|nucleoporin 62kDa##BC014842|NUP62|23636|nucleoporin 62kDa##BC064378|IL4I1|259307|interleukin 4 induced 1##BC090852|IL4I1|259307|interleukin 4 induced 1##AF293462|IL4I1|259307|interleukin 4 induced 1##AY358933|IL4I1|259307|interleukin 4 induced 1##NM_152899|IL4I1|259307|interleukin 4 induced 1##AK090606|TBC1D17|79735|TBC1 domain family, member 17##NM_012068|ATF5|22809|activating transcription factor 5##AK290592|ATF5|22809|activating transcription factor 5##NM_001193646|ATF5|22809|activating transcription factor 5##AK091985|ATF5|22809|activating transcription factor 5##AB021663|ATF5|22809|activating transcription factor 5##AK024402|ATF5|22809|activating transcription factor 5##AB073613|ATF5|22809|activating transcription factor 5##BC005174|ATF5|22809|activating transcription factor 5##AJ880387|IL4I1|259307|interleukin 4 induced 1##AJ880386|IL4I1|259307|interleukin 4 induced 1	1.991223	0.0	denovo_WM_7:47:0.657	denovo_WM_7:48:0.329	denovo_WM_7:62:0.332	denovo_WM_7:63:0.660
chr6	149555933	149556081	reg1013415.p1	4.001	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-487798	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-891816	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-892017	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	83096	+	AK315038 NM_015093 AK307650	83434	+	AY340238 NM_001002255 BC130305 HQ258040	165501	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.990183	0.0	denovo_WM_7:1:0.322	denovo_WM_7:2:0.322	denovo_WM_7:3:0.322
chr6	152623306	152623486	reg1002658.p1	4.001	+	TSC_hg19_v1_chr6_-_152623240 AK310977	-145	-	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	-494530	+	NM_001122740 U68067	-494943	+	TSC_hg19_v1_chr6_-_152702331 BX537517	78945	-	AK056122 TSC_hg19_v1_chr6_-_152702456 BC039121	79078	-	AF535142 NM_033071 TSC_hg19_v1_chr6_-_152958011	334646	-	AK310977|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##BX537517|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AK056122|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##BC039121|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AF535142|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##NM_033071|SYNE1|23345|spectrin repeat containing, nuclear envelope 1	0.0	0.0	
chr1	156066521	156066587	reg1017637.p1	4.000	+	TSC_hg19_v1_chr1_+_156052358 AK056143	-14181	+	AY950677 NM_001093725 TSC_hg19_v1_chr1_-_156051805	-14756	-	AF274025 BC009831 NM_020387 BC033322 AF083124	-35581	+	TSC_hg19_v1_chr1_+_156084501 NM_005572 NM_170707 NM_170708 X03444 X03445 AK026584 AK122732 AY357727 BC014507 BC033088 BC000511	17939	+	TSC_hg19_v1_chr1_+_156084553 BC003162 AK130179	17997	+	TSC_hg19_v1_chr1_+_156084568 M13451	18016	+	AK056143|LMNA|4000|lamin A/C##AY950677|MEX3A|92312|mex-3 homolog A (C. elegans)##NM_001093725|MEX3A|92312|mex-3 homolog A (C. elegans)##AF274025|RAB25|57111|RAB25, member RAS oncogene family##BC009831|RAB25|57111|RAB25, member RAS oncogene family##NM_020387|RAB25|57111|RAB25, member RAS oncogene family##BC033322|RAB25|57111|RAB25, member RAS oncogene family##AF083124|RAB25|57111|RAB25, member RAS oncogene family##NM_005572|LMNA|4000|lamin A/C##NM_170707|LMNA|4000|lamin A/C##NM_170708|LMNA|4000|lamin A/C##X03444|LMNA|4000|lamin A/C##X03445|LMNA|4000|lamin A/C##AK026584|LMNA|4000|lamin A/C##AK122732|LMNA|4000|lamin A/C##AY357727|LMNA|4000|lamin A/C##BC014507|LMNA|4000|lamin A/C##BC033088|LMNA|4000|lamin A/C##BC000511|LMNA|4000|lamin A/C##BC003162|LMNA|4000|lamin A/C##AK130179|LMNA|4000|lamin A/C##M13451|LMNA|4000|lamin A/C	0.0	0.998422	CTCF.p2:26:0.998
chr11	67117824	67117901	reg1015909.p1	4.000	+	AK096155 TSC_hg19_v1_chr11_+_67085309	-32548	+	TSC_hg19_v1_chr11_+_67071027 AK074432 AK001790 AK094226 BC007709 AB527672 AB072360 AB099291	-46821	+	NM_017857 TSC_hg19_v1_chr11_+_67070955 AK000522	-46921	+	AF179890 BC001334 TSC_hg19_v1_chr11_-_67121006 BC070250 AB209274 NM_021173	3142	-	DQ891525 DQ894715 AB528390 AY049779 BC066229 BC066230 BC066231 AF172854 BC012939 AF176911 NM_013246	23244	-	AK298052 NM_001166212	23785	-	AK096155|LOC100130987|100130987|uncharacterized LOC100130987##AK074432|SSH3|54961|slingshot homolog 3 (Drosophila)##AK001790|SSH3|54961|slingshot homolog 3 (Drosophila)##AK094226|SSH3|54961|slingshot homolog 3 (Drosophila)##BC007709|SSH3|54961|slingshot homolog 3 (Drosophila)##AB072360|SSH3|54961|slingshot homolog 3 (Drosophila)##AB099291|SSH3|54961|slingshot homolog 3 (Drosophila)##NM_017857|SSH3|54961|slingshot homolog 3 (Drosophila)##AK000522|SSH3|54961|slingshot homolog 3 (Drosophila)##AF179890|POLD4|57804|polymerase (DNA-directed), delta 4##BC001334|POLD4|57804|polymerase (DNA-directed), delta 4##BC070250|POLD4|57804|polymerase (DNA-directed), delta 4##AB209274|POLD4|57804|polymerase (DNA-directed), delta 4##NM_021173|POLD4|57804|polymerase (DNA-directed), delta 4##DQ891525|CLCF1|23529|cardiotrophin-like cytokine factor 1##DQ894715|CLCF1|23529|cardiotrophin-like cytokine factor 1##AY049779|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066229|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066230|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC066231|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF172854|CLCF1|23529|cardiotrophin-like cytokine factor 1##BC012939|CLCF1|23529|cardiotrophin-like cytokine factor 1##AF176911|CLCF1|23529|cardiotrophin-like cytokine factor 1##NM_013246|CLCF1|23529|cardiotrophin-like cytokine factor 1##AK298052|CLCF1|23529|cardiotrophin-like cytokine factor 1##NM_001166212|CLCF1|23529|cardiotrophin-like cytokine factor 1	1.622923	0.0	denovo_WM_7:74:0.383	denovo_WM_7:89:0.300	denovo_WM_7:90:0.317
chr1	182399553	182399675	reg1015867.p1	4.000	+	AJ515384 NM_172000	-29864	-	TSC_hg19_v1_chr1_-_182361366 AK122784 NM_001033044 NM_002065	-38274	-	TSC_hg19_v1_chr1_-_182360928 AY947343 BC018992 BC011700 X59834 BC010037 BC011852 Y00387 BC051726 BX537384	-38679	-	NM_001137669 AK302768 BC142944 AL136902	19659	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	158769	-	CU675308 TSC_hg19_v1_chr1_+_182569465	169832	+	AJ515384|TEDDM1|127670|transmembrane epididymal protein 1##NM_172000|TEDDM1|127670|transmembrane epididymal protein 1##AK122784|GLUL|2752|glutamate-ammonia ligase##NM_001033044|GLUL|2752|glutamate-ammonia ligase##NM_002065|GLUL|2752|glutamate-ammonia ligase##AY947343|GLUL|2752|glutamate-ammonia ligase##BC018992|GLUL|2752|glutamate-ammonia ligase##BC011700|GLUL|2752|glutamate-ammonia ligase##X59834|GLUL|2752|glutamate-ammonia ligase##BC010037|GLUL|2752|glutamate-ammonia ligase##BC011852|GLUL|2752|glutamate-ammonia ligase##Y00387|GLUL|2752|glutamate-ammonia ligase##BC051726|GLUL|2752|glutamate-ammonia ligase##BX537384|GLUL|2752|glutamate-ammonia ligase##NM_001137669|RGSL1|353299|regulator of G-protein signaling like 1##AK302768|RGSL1|353299|regulator of G-protein signaling like 1##BC142944|RGSL1|353299|regulator of G-protein signaling like 1##AL136902|RGSL1|353299|regulator of G-protein signaling like 1##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	0.999702	0.0	
chr1	27648272	27648338	reg1009732.p1	4.000	+	TSC_hg19_v1_chr1_+_27561153 BC032523	-87143	+	TSC_hg19_v1_chr1_+_27561124 AK315564	-87178	+	NM_015023 TSC_hg19_v1_chr1_+_27561056	-87271	+	TSC_hg19_v1_chr1_+_27648669 NM_032125 AK313110 AK303821	346	+	AL136683 BC011579 BC090039 TSC_hg19_v1_chr1_+_27648745	428	+	TSC_hg19_v1_chr1_+_27648756 EU831420 EU831513 AF251699 AK222642 AK307077 BX648289	511	+	BC032523|WDTC1|23038|WD and tetratricopeptide repeats 1##AK315564|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_015023|WDTC1|23038|WD and tetratricopeptide repeats 1##NM_032125|TMEM222|84065|transmembrane protein 222##AK313110|TMEM222|84065|transmembrane protein 222##AK303821|TMEM222|84065|transmembrane protein 222##AL136683|TMEM222|84065|transmembrane protein 222##BC011579|TMEM222|84065|transmembrane protein 222##BC090039|TMEM222|84065|transmembrane protein 222##EU831420|TMEM222|84065|transmembrane protein 222##EU831513|TMEM222|84065|transmembrane protein 222##AF251699|TMEM222|84065|transmembrane protein 222##AK222642|TMEM222|84065|transmembrane protein 222##AK307077|TMEM222|84065|transmembrane protein 222##BX648289|LOC644961|644961|actin, beta pseudogene	0.0	0.0	
chr18	4871319	4871424	reg1014790.p1	4.000	+	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	-416101	-	AK304101 TSC_hg19_v1_chr18_-_4455255	-416118	-	AK294777 AK294717 NM_001242762 NM_001242763	-996644	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	325881	-	TSC_hg19_v1_chr18_+_5238098 AK056929 BC041875	366732	+	TSC_hg19_v1_chr18_-_5295610 NM_001243702	424282	-	AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42##NM_001243702|ZFP161|7541|zinc finger protein 161 homolog (mouse)	0.063467	0.0	
chr19	16939849	16939970	reg1013071.p2	4.000	+	BX648940 NM_001007525 CR749794	-109121	+	TSC_hg19_v1_chr19_+_16771949 AK025981 NM_024074 AK292764 BC001195	-167943	+	TSC_hg19_v1_chr19_-_16770956 NM_024104	-168947	-	TSC_hg19_v1_chr19_+_16940221 NM_015260 AB014600 AY706204 BC063531 BC110821 AB463259 BC025026	293	+	TSC_hg19_v1_chr19_+_16999830 AF055917 NM_003950	59916	+	TSC_hg19_v1_chr19_+_16999929 BC074782 AF080214 AY431102	60026	+	BX648940|NWD1|284434|NACHT and WD repeat domain containing 1##NM_001007525|NWD1|284434|NACHT and WD repeat domain containing 1##CR749794|NWD1|284434|NACHT and WD repeat domain containing 1##AK025981|TMEM38A|79041|transmembrane protein 38A##NM_024074|TMEM38A|79041|transmembrane protein 38A##AK292764|TMEM38A|79041|transmembrane protein 38A##BC001195|TMEM38A|79041|transmembrane protein 38A##NM_024104|C19orf42|79086|chromosome 19 open reading frame 42##NM_015260|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AB014600|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AY706204|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC063531|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC110821|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##BC025026|SIN3B|23309|SIN3 transcription regulator homolog B (yeast)##AF055917|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##NM_003950|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##BC074782|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##AF080214|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3##AY431102|F2RL3|9002|coagulation factor II (thrombin) receptor-like 3	0.0	0.0	
chr6	12104541	12104645	reg1014572.p1	4.000	+	NM_002114	-91870	+	NM_001143948 NM_032744	-325314	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-566095	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	186000	+	TSC_hg19_v1_chr6_+_12514301 D28417	409709	+	AK295263 TSC_hg19_v1_chr6_+_12716998	612350	+	NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1##AK295263|PHACTR1|221692|phosphatase and actin regulator 1	1.174678	0.0	
chr8	38859665	38859825	reg1002299.p1	4.000	+	TSC_hg19_v1_chr8_+_38854524 BC126406 BC143923 BC143924 AF495383	-5199	+	TSC_hg19_v1_chr8_+_38854491 BC027996 NM_003816 U41766	-5269	+	TSC_hg19_v1_chr8_-_38854029 AK314703 AK075155 NM_001024380 NM_001024381 NM_031940 NM_078473	-5713	-	NM_145004 AK300148 AY172952 AY358739 AK313864 BC026169 BC030698 BC034975 AK122608 BC028702 BC030014 BC026085 DQ890910 DQ894061 CU693126	105425	+	NM_001190956 NM_014237 AK313961 AY358321 BC070279 BC034624 CU687082 AJ133004 BC121045 BC121046 AK225744	582372	+	X99374 CU687896 CU689996 DQ891615 DQ894807 AJ133005 U52370 BC034957 BC064547 AK301734 U38805 NM_001464	835995	-	BC126406|ADAM9|8754|ADAM metallopeptidase domain 9##BC143923|ADAM9|8754|ADAM metallopeptidase domain 9##BC143924|ADAM9|8754|ADAM metallopeptidase domain 9##AF495383|ADAM9|8754|ADAM metallopeptidase domain 9##BC027996|ADAM9|8754|ADAM metallopeptidase domain 9##NM_003816|ADAM9|8754|ADAM metallopeptidase domain 9##U41766|ADAM9|8754|ADAM metallopeptidase domain 9##AK314703|TM2D2|83877|TM2 domain containing 2##AK075155|TM2D2|83877|TM2 domain containing 2##NM_001024380|TM2D2|83877|TM2 domain containing 2##NM_001024381|TM2D2|83877|TM2 domain containing 2##NM_031940|TM2D2|83877|TM2 domain containing 2##NM_078473|TM2D2|83877|TM2 domain containing 2##NM_145004|ADAM32|203102|ADAM metallopeptidase domain 32##AK300148|ADAM32|203102|ADAM metallopeptidase domain 32##AY172952|ADAM32|203102|ADAM metallopeptidase domain 32##AY358739|ADAM32|203102|ADAM metallopeptidase domain 32##AK313864|ADAM32|203102|ADAM metallopeptidase domain 32##BC026169|ADAM32|203102|ADAM metallopeptidase domain 32##BC030698|ADAM32|203102|ADAM metallopeptidase domain 32##BC034975|ADAM32|203102|ADAM metallopeptidase domain 32##AK122608|ADAM32|203102|ADAM metallopeptidase domain 32##BC028702|ADAM32|203102|ADAM metallopeptidase domain 32##BC030014|ADAM32|203102|ADAM metallopeptidase domain 32##BC026085|ADAM32|203102|ADAM metallopeptidase domain 32##DQ890910|ADAM32|203102|ADAM metallopeptidase domain 32##DQ894061|ADAM32|203102|ADAM metallopeptidase domain 32##NM_001190956|ADAM18|8749|ADAM metallopeptidase domain 18##NM_014237|ADAM18|8749|ADAM metallopeptidase domain 18##AK313961|ADAM18|8749|ADAM metallopeptidase domain 18##AY358321|ADAM18|8749|ADAM metallopeptidase domain 18##BC070279|ADAM18|8749|ADAM metallopeptidase domain 18##BC034624|ADAM18|8749|ADAM metallopeptidase domain 18##AJ133004|ADAM18|8749|ADAM metallopeptidase domain 18##BC121045|ADAM18|8749|ADAM metallopeptidase domain 18##BC121046|ADAM18|8749|ADAM metallopeptidase domain 18##AK225744|ADAM18|8749|ADAM metallopeptidase domain 18##X99374|ADAM2|2515|ADAM metallopeptidase domain 2##DQ891615|ADAM2|2515|ADAM metallopeptidase domain 2##DQ894807|ADAM2|2515|ADAM metallopeptidase domain 2##AJ133005|ADAM2|2515|ADAM metallopeptidase domain 2##U52370|ADAM2|2515|ADAM metallopeptidase domain 2##BC034957|ADAM2|2515|ADAM metallopeptidase domain 2##BC064547|ADAM2|2515|ADAM metallopeptidase domain 2##AK301734|ADAM2|2515|ADAM metallopeptidase domain 2##U38805|ADAM2|2515|ADAM metallopeptidase domain 2##NM_001464|ADAM2|2515|ADAM metallopeptidase domain 2	1.088682	0.0	
chr19	10978684	10978801	reg1006115.p2	3.999	+	BC157863 NM_001136482	-19637	+	AB528501 DQ892640 DQ895878 BC002443 BC018831 TSC_hg19_v1_chr19_-_10946889 U41804 NM_006858	-31818	-	TSC_hg19_v1_chr19_+_10828827 BC039596 AK289831	-149883	+	TSC_hg19_v1_chr19_+_10982255 NM_199141	3508	+	TSC_hg19_v1_chr19_+_10982381 AL833242	3694	+	CU680474 AB463355 AM392632 TSC_hg19_v1_chr19_-_11039312 BC000056 BC013014 NM_024029	60497	-	BC157863|C19orf38|255809|chromosome 19 open reading frame 38##NM_001136482|C19orf38|255809|chromosome 19 open reading frame 38##DQ892640|TMED1|11018|transmembrane emp24 protein transport domain containing 1##DQ895878|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC002443|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC018831|TMED1|11018|transmembrane emp24 protein transport domain containing 1##U41804|TMED1|11018|transmembrane emp24 protein transport domain containing 1##NM_006858|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC039596|DNM2|1785|dynamin 2##AK289831|DNM2|1785|dynamin 2##NM_199141|CARM1|10498|coactivator-associated arginine methyltransferase 1##AL833242|CARM1|10498|coactivator-associated arginine methyltransferase 1##AM392632|YIPF2|78992|Yip1 domain family, member 2##BC000056|YIPF2|78992|Yip1 domain family, member 2##BC013014|YIPF2|78992|Yip1 domain family, member 2##NM_024029|YIPF2|78992|Yip1 domain family, member 2	0.0	0.027699	
chr6	44801162	44801298	reg1016125.p1	3.999	+	TSC_hg19_v1_chr6_+_44355461 AK128737 AK299738 BC001568 AB007892 AB590067 CU674768 DQ891623 DQ894814 U86753	-445730	+	NM_001253 TSC_hg19_v1_chr6_+_44355294	-445958	+	NM_145026 AK058171	-490790	+	NM_001015051 NM_001024630 AF053952	494826	+	AF073930 NM_003599 TSC_hg19_v1_chr6_-_45345614 AK303838 BC035816 BC050384 NM_181356 AK313874	544445	-	TSC_hg19_v1_chr6_+_45389825 NM_004348	588635	+	AK128737|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##AK299738|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##BC001568|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##AB007892|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##DQ891623|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##DQ894814|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##U86753|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##NM_001253|CDC5L|988|CDC5 cell division cycle 5-like (S. pombe)##NM_145026|SPATS1|221409|spermatogenesis associated, serine-rich 1##AK058171|SPATS1|221409|spermatogenesis associated, serine-rich 1##NM_001015051|RUNX2|860|runt-related transcription factor 2##NM_001024630|RUNX2|860|runt-related transcription factor 2##AF053952|RUNX2|860|runt-related transcription factor 2##AF073930|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##NM_003599|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##AK303838|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##BC035816|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##BC050384|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##NM_181356|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##AK313874|SUPT3H|8464|suppressor of Ty 3 homolog (S. cerevisiae)##NM_004348|RUNX2|860|runt-related transcription factor 2	0.081636	0.0	
chr1	150198024	150198125	reg1014048.p1	3.998	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-75636	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-75770	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-75942	+	AK095228 NM_001136479	8951	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	10193	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	10377	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	1.778144	0.0	denovo_WM_7:-57:0.271	denovo_WM_7:-58:0.325	denovo_WM_7:-59:0.222	denovo_WM_7:-72:0.306	denovo_WM_7:-73:0.285	denovo_WM_7:-74:0.252
chr12	111131362	111131462	reg1013325.p1	3.998	+	AK293543 NM_001040107	-3813	-	TSC_hg19_v1_chr12_-_111126921 BC009731 NM_032369	-4454	-	AK295514 NM_001082537 NM_001082538 NM_001173976 NM_024549 TSC_hg19_v1_chr12_+_111051936 DQ278868 NM_001173975 AK055891 AK092775 AX747722 AK024780 BC040113 BC033811 AK301732 AY358184 BC044885 BC062611	-79487	+	L07395 AK297882 AB590512 EU831993 EU832086 TSC_hg19_v1_chr12_-_111180593	49134	-	TSC_hg19_v1_chr12_-_111180641 X74008 BC014073	49244	-	TSC_hg19_v1_chr12_-_111180730 NM_001244974 NM_002710	49344	-	AK293543|HVCN1|84329|hydrogen voltage-gated channel 1##NM_001040107|HVCN1|84329|hydrogen voltage-gated channel 1##BC009731|HVCN1|84329|hydrogen voltage-gated channel 1##NM_032369|HVCN1|84329|hydrogen voltage-gated channel 1##AK295514|TCTN1|79600|tectonic family member 1##NM_001082537|TCTN1|79600|tectonic family member 1##NM_001082538|TCTN1|79600|tectonic family member 1##NM_001173976|TCTN1|79600|tectonic family member 1##NM_024549|TCTN1|79600|tectonic family member 1##DQ278868|TCTN1|79600|tectonic family member 1##NM_001173975|TCTN1|79600|tectonic family member 1##AK055891|TCTN1|79600|tectonic family member 1##AK092775|TCTN1|79600|tectonic family member 1##AK024780|TCTN1|79600|tectonic family member 1##BC040113|TCTN1|79600|tectonic family member 1##BC033811|TCTN1|79600|tectonic family member 1##AK301732|TCTN1|79600|tectonic family member 1##AY358184|TCTN1|79600|tectonic family member 1##BC044885|TCTN1|79600|tectonic family member 1##BC062611|TCTN1|79600|tectonic family member 1##L07395|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##AK297882|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU831993|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##EU832086|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##X74008|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##BC014073|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_001244974|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme##NM_002710|PPP1CC|5501|protein phosphatase 1, catalytic subunit, gamma isozyme	0.989281	0.0	denovo_WM_7:-54:0.989
chr12	51567705	51567787	reg1012926.p1	3.998	+	TSC_hg19_v1_chr12_-_51566921 U03494 NM_001173452 NM_001173453 NM_005653	-840	-	TSC_hg19_v1_chr12_-_51566607 BC003634	-1115	-	TSC_hg19_v1_chr12_-_51566577 M84810 AK291264 AK308087	-1179	-	AL832881 NM_002702	24203	-	AK095191 TSC_hg19_v1_chr12_-_51611589	43787	-	NM_001136264 NM_001136266 NM_001136267 NM_001136268 NM_001136269 NM_014764 TSC_hg19_v1_chr12_+_51632559	64800	+	U03494|TFCP2|7024|transcription factor CP2##NM_001173452|TFCP2|7024|transcription factor CP2##NM_001173453|TFCP2|7024|transcription factor CP2##NM_005653|TFCP2|7024|transcription factor CP2##BC003634|TFCP2|7024|transcription factor CP2##M84810|TFCP2|7024|transcription factor CP2##AK291264|TFCP2|7024|transcription factor CP2##AK308087|TFCP2|7024|transcription factor CP2##AL832881|POU6F1|5463|POU class 6 homeobox 1##NM_002702|POU6F1|5463|POU class 6 homeobox 1##AK095191|POU6F1|5463|POU class 6 homeobox 1##NM_001136264|DAZAP2|9802|DAZ associated protein 2##NM_001136266|DAZAP2|9802|DAZ associated protein 2##NM_001136267|DAZAP2|9802|DAZ associated protein 2##NM_001136268|DAZAP2|9802|DAZ associated protein 2##NM_001136269|DAZAP2|9802|DAZ associated protein 2##NM_014764|DAZAP2|9802|DAZ associated protein 2	1.990675	0.0	
chr14	92980059	92980154	reg1019681.p1	3.998	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-147	+	NM_153646 AF520704 AF520705 BC069653	-189930	+	AK295059 NM_153647	-190570	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	138530	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	138717	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	234853	-	AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##NM_153646|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520704|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AF520705|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##BC069653|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK295059|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##NM_153647|SLC24A4|123041|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain	0.0	0.0	
chr16	4579598	4579676	reg1012455.p1	3.998	+	AK311295 BC007604 TSC_hg19_v1_chr16_-_4563123	-16586	-	AK093388 NM_001127205	-33779	+	NM_001127204 NM_002134 AK313660 TSC_hg19_v1_chr16_+_4526411 BC002396 S34389 AK222629	-53234	+	TSC_hg19_v1_chr16_-_4588442 AF195661 AL833853 NM_001199054	8800	-	TSC_hg19_v1_chr16_-_4588775 BC002882 AK292036 AK302297 AL136698 AK294257 DQ167023 NM_001199055 NM_001199056 NM_013399 AK307067 AK308532	9155	-	NM_001145011	26853	+	AK311295|C16orf5|29965|chromosome 16 open reading frame 5##BC007604|C16orf5|29965|chromosome 16 open reading frame 5##AK093388|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127205|HMOX2|3163|heme oxygenase (decycling) 2##NM_001127204|HMOX2|3163|heme oxygenase (decycling) 2##NM_002134|HMOX2|3163|heme oxygenase (decycling) 2##AK313660|HMOX2|3163|heme oxygenase (decycling) 2##BC002396|HMOX2|3163|heme oxygenase (decycling) 2##S34389|HMOX2|3163|heme oxygenase (decycling) 2##AK222629|HMOX2|3163|heme oxygenase (decycling) 2##AF195661|C16orf5|29965|chromosome 16 open reading frame 5##AL833853|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199054|C16orf5|29965|chromosome 16 open reading frame 5##BC002882|C16orf5|29965|chromosome 16 open reading frame 5##AK292036|C16orf5|29965|chromosome 16 open reading frame 5##AK302297|C16orf5|29965|chromosome 16 open reading frame 5##AL136698|C16orf5|29965|chromosome 16 open reading frame 5##AK294257|C16orf5|29965|chromosome 16 open reading frame 5##DQ167023|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199055|C16orf5|29965|chromosome 16 open reading frame 5##NM_001199056|C16orf5|29965|chromosome 16 open reading frame 5##NM_013399|C16orf5|29965|chromosome 16 open reading frame 5##AK307067|C16orf5|29965|chromosome 16 open reading frame 5##AK308532|C16orf5|29965|chromosome 16 open reading frame 5##NM_001145011|C16orf96|342346|chromosome 16 open reading frame 96	0.0	0.0	
chr16	67719542	67719722	reg1002891.p1	3.998	+	TSC_hg19_v1_chr16_+_67700716 NM_001012984 AK123796 BC032064 BC041612 BC064498 BC082249	-18911	+	TSC_hg19_v1_chr16_-_67700634 BC008284 AL136786 NM_032140	-19017	-	TSC_hg19_v1_chr16_+_67694862 NM_001037281 NM_016948 AB043634 BC015626 AF265565 AB041642 AJ277095 DQ893477 DQ896347 AB528401	-24757	+	TSC_hg19_v1_chr16_-_67753220 AK074382 BC107585 BC000757 AK307280 AK225997 NM_001243650 NM_030819	33597	-	TSC_hg19_v1_chr16_-_67840456 AB384605 AB040897 AK055727 AK298806 AK304030 BC099917 AK295171 AK295530	120772	-	TSC_hg19_v1_chr16_-_67840464 BC121176 BC121177 AY337313 NM_020850	120877	-	NM_001012984|C16orf86|388284|chromosome 16 open reading frame 86##AK123796|C16orf86|388284|chromosome 16 open reading frame 86##BC032064|C16orf86|388284|chromosome 16 open reading frame 86##BC041612|C16orf86|388284|chromosome 16 open reading frame 86##BC064498|C16orf86|388284|chromosome 16 open reading frame 86##BC082249|C16orf86|388284|chromosome 16 open reading frame 86##BC008284|C16orf48|84080|chromosome 16 open reading frame 48##AL136786|C16orf48|84080|chromosome 16 open reading frame 48##NM_032140|C16orf48|84080|chromosome 16 open reading frame 48##NM_001037281|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##NM_016948|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AB043634|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##BC015626|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AF265565|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AB041642|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AJ277095|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##DQ893477|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##DQ896347|PARD6A|50855|par-6 partitioning defective 6 homolog alpha (C. elegans)##AK074382|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC107585|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##BC000757|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK307280|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AK225997|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_001243650|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##NM_030819|GFOD2|81577|glucose-fructose oxidoreductase domain containing 2##AB040897|RANBP10|57610|RAN binding protein 10##AK055727|RANBP10|57610|RAN binding protein 10##AK298806|RANBP10|57610|RAN binding protein 10##AK304030|RANBP10|57610|RAN binding protein 10##BC099917|RANBP10|57610|RAN binding protein 10##AK295171|RANBP10|57610|RAN binding protein 10##AK295530|RANBP10|57610|RAN binding protein 10##BC121176|RANBP10|57610|RAN binding protein 10##BC121177|RANBP10|57610|RAN binding protein 10##AY337313|RANBP10|57610|RAN binding protein 10##NM_020850|RANBP10|57610|RAN binding protein 10	0.0	0.0	
chr17	76374662	76374753	reg1015481.p2	3.998	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-18550	-	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-147244	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-164310	+	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	23	+	NM_173628	198768	-	AK316277 TSC_hg19_v1_chr17_-_76719649	344940	-	AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316277|CYTH1|9267|cytohesin 1	0.0	0.0	
chr18	46477350	46477530	reg1009419.p1	3.998	+	AF010193 NM_001190821 NM_005904	-360	-	TSC_hg19_v1_chr18_-_46476708 AF015261 AB385184 BC074818 BC074819	-673	-	AK301535 NM_001190822	-1738	-	TSC_hg19_v1_chr18_-_46987050 AK315091 AK296579 AK291303 BC064394 AK074611 AK091256 AX746878 NM_017653	509611	-	TSC_hg19_v1_chr18_-_47013575 AB097012	536125	-	TSC_hg19_v1_chr18_-_47013599 BC093004	536159	-	AF010193|SMAD7|4092|SMAD family member 7##NM_001190821|SMAD7|4092|SMAD family member 7##NM_005904|SMAD7|4092|SMAD family member 7##AF015261|SMAD7|4092|SMAD family member 7##BC074818|SMAD7|4092|SMAD family member 7##BC074819|SMAD7|4092|SMAD family member 7##AK301535|SMAD7|4092|SMAD family member 7##NM_001190822|SMAD7|4092|SMAD family member 7##AK315091|DYM|54808|dymeclin##AK296579|DYM|54808|dymeclin##AK291303|DYM|54808|dymeclin##BC064394|DYM|54808|dymeclin##AK074611|DYM|54808|dymeclin##AK091256|DYM|54808|dymeclin##NM_017653|DYM|54808|dymeclin##AB097012|C18orf32|497661|chromosome 18 open reading frame 32##BC093004|C18orf32|497661|chromosome 18 open reading frame 32	0.942965	0.0	denovo_WM_7:-96:0.280	denovo_WM_7:-97:0.247
chr19	17890843	17891000	reg1009169.p2	3.998	+	NM_001161359 NM_015122 TSC_hg19_v1_chr19_+_17862326 AK316458 BC041130	-28605	+	TSC_hg19_v1_chr19_+_17858564 NM_001161357 NM_001161358 AK291410 BC028021	-32370	+	DQ387861 NM_018174 AL834233 BC067115 TSC_hg19_v1_chr19_+_17830310 BC080547 AJ440784 AK027623 BC113952 AK308975	-60612	+	TSC_hg19_v1_chr19_+_17905918 NM_014256	14995	+	TSC_hg19_v1_chr19_+_17905971 AK075466 AK314323 AK075434 AB015630 AK225421 AB049585 AY358955 BC066876 BC067423 AK225478	15038	+	BC032810 BC040435 BC053345 BC061886 BC106721 BC071706 BC106722 NM_005543 S72482 AK302780 AY082014	41426	-	NM_001161359|FCHO1|23149|FCH domain only 1##NM_015122|FCHO1|23149|FCH domain only 1##AK316458|FCHO1|23149|FCH domain only 1##BC041130|FCHO1|23149|FCH domain only 1##NM_001161357|FCHO1|23149|FCH domain only 1##NM_001161358|FCHO1|23149|FCH domain only 1##AK291410|FCHO1|23149|FCH domain only 1##BC028021|FCHO1|23149|FCH domain only 1##DQ387861|MAP1S|55201|microtubule-associated protein 1S##NM_018174|MAP1S|55201|microtubule-associated protein 1S##AL834233|MAP1S|55201|microtubule-associated protein 1S##BC067115|MAP1S|55201|microtubule-associated protein 1S##BC080547|MAP1S|55201|microtubule-associated protein 1S##AJ440784|MAP1S|55201|microtubule-associated protein 1S##AK027623|MAP1S|55201|microtubule-associated protein 1S##BC113952|MAP1S|55201|microtubule-associated protein 1S##AK308975|MAP1S|55201|microtubule-associated protein 1S##NM_014256|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK075466|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK314323|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK075434|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AB015630|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK225421|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AB049585|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AY358955|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC066876|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC067423|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##AK225478|B3GNT3|10331|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3##BC032810|INSL3|3640|insulin-like 3 (Leydig cell)##BC040435|INSL3|3640|insulin-like 3 (Leydig cell)##BC053345|INSL3|3640|insulin-like 3 (Leydig cell)##BC061886|INSL3|3640|insulin-like 3 (Leydig cell)##BC106721|INSL3|3640|insulin-like 3 (Leydig cell)##BC071706|INSL3|3640|insulin-like 3 (Leydig cell)##BC106722|INSL3|3640|insulin-like 3 (Leydig cell)##NM_005543|INSL3|3640|insulin-like 3 (Leydig cell)##S72482|INSL3|3640|insulin-like 3 (Leydig cell)##AK302780|INSL3|3640|insulin-like 3 (Leydig cell)##AY082014|INSL3|3640|insulin-like 3 (Leydig cell)	0.993717	0.0	
chr20	52229604	52229714	reg1015579.p1	3.998	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-18860	-	AF041259 NM_006526	-30024	-	AK302570 NM_001193421	-427838	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	457403	-	AK315220 NM_003657	457644	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	560861	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	1.004957	0.0	denovo_WM_7:23:0.248	denovo_WM_7:24:0.248	denovo_WM_7:25:0.248	denovo_WM_7:26:0.248
chr2	90482232	90482315	reg1009029.p2	3.998	+	TSC_hg19_v1_chr2_+_90211706 Z69013	-270555	+	TSC_hg19_v1_chr2_+_90077732 AJ131061	-404519	+	Z27171 L06158 AF490907 X72480 AF490924 X72424 X72441 X72477 U44792 X72427 AJ548508 L01279 L38434 M74019 M87478 S67637 U43765 U43766 U43770 U43773 U66190 X85996 X85997 Y14736 AJ010446 BC073775 AF417853 TSC_hg19_v1_chr2_-_89619885 BC070334	-862420	-	TSC_hg19_v1_chr2_-_91847997 BC030764	1365730	-	AK097438 BC021716 NM_144705 AK296678 CU692394	5054977	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	5209209	+	BC070334|IGKC|3514|immunoglobulin kappa constant##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein	0.0	0.0	
chr3	95106506	95106686	reg1016955.p1	3.998	+	AK122674 NM_001195643	-1324530	-	TSC_hg19_v1_chr3_+_93781863 AF169972 BC018432 BC020602 BC057238 NM_022072 AK026262	-1324752	+	BC045541 TSC_hg19_v1_chr3_-_93781761 AL832912 BC063379 NM_176815	-1324852	-	NM_001080448 TSC_hg19_v1_chr3_+_96533435 AK092565 AX747601	1426834	+	AK302040 AK310249 BC031881 BC067287 AK302080 AL133666 NM_173655	2051875	+	TSC_hg19_v1_chr3_+_97483617 BC024239 NM_032146 NM_177976 AK292958 AK310829 AK311281	2377004	+	AK122674|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001195643|DHFRL1|200895|dihydrofolate reductase-like 1##AF169972|NSUN3|63899|NOP2/Sun domain family, member 3##BC018432|NSUN3|63899|NOP2/Sun domain family, member 3##BC020602|NSUN3|63899|NOP2/Sun domain family, member 3##BC057238|NSUN3|63899|NOP2/Sun domain family, member 3##NM_022072|NSUN3|63899|NOP2/Sun domain family, member 3##AK026262|NSUN3|63899|NOP2/Sun domain family, member 3##BC045541|DHFRL1|200895|dihydrofolate reductase-like 1##AL832912|DHFRL1|200895|dihydrofolate reductase-like 1##BC063379|DHFRL1|200895|dihydrofolate reductase-like 1##NM_176815|DHFRL1|200895|dihydrofolate reductase-like 1##NM_001080448|EPHA6|285220|EPH receptor A6##AK092565|EPHA6|285220|EPH receptor A6##AK302040|EPHA6|285220|EPH receptor A6##AK310249|EPHA6|285220|EPH receptor A6##BC031881|EPHA6|285220|EPH receptor A6##BC067287|EPHA6|285220|EPH receptor A6##AK302080|EPHA6|285220|EPH receptor A6##AL133666|EPHA6|285220|EPH receptor A6##NM_173655|EPHA6|285220|EPH receptor A6##BC024239|ARL6|84100|ADP-ribosylation factor-like 6##NM_032146|ARL6|84100|ADP-ribosylation factor-like 6##NM_177976|ARL6|84100|ADP-ribosylation factor-like 6##AK292958|ARL6|84100|ADP-ribosylation factor-like 6##AK310829|ARL6|84100|ADP-ribosylation factor-like 6	0.0	0.0	
chr1	110926345	110926456	reg1010535.p1	3.997	+	TSC_hg19_v1_chr1_+_110882092 AK022541 BC006397 BC062316	-44319	+	BC047479 TSC_hg19_v1_chr1_+_110882057	-44343	+	AF368062 AF368063 AF368064 NM_001201545 NM_022768 BC098140 BC103493 BC103507 BC103660 TSC_hg19_v1_chr1_+_110882045	-44406	+	U59185 AL833619 TSC_hg19_v1_chr1_-_110933649 AK129985 AK223307 AK290720 AK298539 AK313735 BX647948 AK295946 BC021664	7252	-	TSC_hg19_v1_chr1_-_110933683 NM_001201546 NM_001201547 NM_001201548 NM_001201549 NM_004696	7293	-	AY623819 CR456866 CR542130 TSC_hg19_v1_chr1_-_110950267	23858	-	AK022541|RBM15|64783|RNA binding motif protein 15##BC006397|RBM15|64783|RNA binding motif protein 15##BC062316|RBM15|64783|RNA binding motif protein 15##BC047479|RBM15|64783|RNA binding motif protein 15##AF368062|RBM15|64783|RNA binding motif protein 15##AF368063|RBM15|64783|RNA binding motif protein 15##AF368064|RBM15|64783|RNA binding motif protein 15##NM_001201545|RBM15|64783|RNA binding motif protein 15##NM_022768|RBM15|64783|RNA binding motif protein 15##BC098140|RBM15|64783|RNA binding motif protein 15##BC103493|RBM15|64783|RNA binding motif protein 15##BC103507|RBM15|64783|RNA binding motif protein 15##BC103660|RBM15|64783|RNA binding motif protein 15##U59185|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AL833619|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AK129985|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AK223307|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AK290720|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AK298539|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AK313735|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##BX647948|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AK295946|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##BC021664|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##NM_001201546|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##NM_001201547|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##NM_001201548|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##NM_001201549|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##NM_004696|SLC16A4|9122|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)##AY623819|HBXIP|10542|hepatitis B virus x interacting protein##CR456866|HBXIP|10542|hepatitis B virus x interacting protein##CR542130|HBXIP|10542|hepatitis B virus x interacting protein	2.03076	0.0	denovo_WM_7:-1:0.971
chr11	110306622	110306802	reg1015324.p2	3.997	+	TSC_hg19_v1_chr11_+_110300641 NM_004109 BC010284 BC017063 J03548 AB096243 M18003 M34788 AB463632 BT006681	-5996	+	TSC_hg19_v1_chr11_-_110167340 BC002626 BC020751 BC047109 AK312903 AK316061 DQ916738 DQ916739 DQ916740 DQ916741 DQ916742 NM_002906	-139399	-	NM_033390 AK295437 TSC_hg19_v1_chr11_+_109964174	-342582	+	AY496266 TSC_hg19_v1_chr11_-_110582834	276091	-	TSC_hg19_v1_chr11_-_110582887 AB037812	276213	-	TSC_hg19_v1_chr11_-_110583161 AK307602 AY496263 AY496264 NM_020809	276573	-	NM_004109|FDX1|2230|ferredoxin 1##BC010284|FDX1|2230|ferredoxin 1##BC017063|FDX1|2230|ferredoxin 1##J03548|FDX1|2230|ferredoxin 1##AB096243|FDX1|2230|ferredoxin 1##M18003|FDX1|2230|ferredoxin 1##M34788|FDX1|2230|ferredoxin 1##BT006681|FDX1|2230|ferredoxin 1##BC002626|RDX|5962|radixin##BC020751|RDX|5962|radixin##BC047109|RDX|5962|radixin##AK312903|RDX|5962|radixin##AK316061|RDX|5962|radixin##DQ916738|RDX|5962|radixin##DQ916739|RDX|5962|radixin##DQ916740|RDX|5962|radixin##DQ916741|RDX|5962|radixin##DQ916742|RDX|5962|radixin##NM_002906|RDX|5962|radixin##NM_033390|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AK295437|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AY496266|ARHGAP20|57569|Rho GTPase activating protein 20##AB037812|ARHGAP20|57569|Rho GTPase activating protein 20##AK307602|ARHGAP20|57569|Rho GTPase activating protein 20##AY496263|ARHGAP20|57569|Rho GTPase activating protein 20##AY496264|ARHGAP20|57569|Rho GTPase activating protein 20##NM_020809|ARHGAP20|57569|Rho GTPase activating protein 20	0.124665	0.0	
chr1	25391177	25391281	reg1010935.p1	3.997	+	BC013362 AK310945 NM_001031680 AF022726	-99687	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	-134443	-	TSC_hg19_v1_chr1_-_25256761 AK301044	-134490	-	CU679829 DQ890663 EU176475 TSC_hg19_v1_chr1_-_25558994 AF273089 AL080166 BC010862 AK303582 AK314859 BC015824 NM_015484 NM_207170	167758	-	BC065040 TSC_hg19_v1_chr1_-_25573922	182694	-	BC001892 AF267856 AF247168 AK027318 AK292532 AK296798 TSC_hg19_v1_chr1_-_25573946 AK226012 NM_020317	182744	-	BC013362|RUNX3|864|runt-related transcription factor 3##AK310945|RUNX3|864|runt-related transcription factor 3##NM_001031680|RUNX3|864|runt-related transcription factor 3##AF022726|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##DQ890663|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##EU176475|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AF273089|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AL080166|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC010862|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK303582|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##AK314859|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC015824|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_015484|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##NM_207170|SYF2|25949|SYF2 homolog, RNA splicing factor (S. cerevisiae)##BC065040|C1orf63|57035|chromosome 1 open reading frame 63##BC001892|C1orf63|57035|chromosome 1 open reading frame 63##AF267856|C1orf63|57035|chromosome 1 open reading frame 63##AF247168|C1orf63|57035|chromosome 1 open reading frame 63##AK027318|C1orf63|57035|chromosome 1 open reading frame 63##AK292532|C1orf63|57035|chromosome 1 open reading frame 63##AK296798|C1orf63|57035|chromosome 1 open reading frame 63##AK226012|C1orf63|57035|chromosome 1 open reading frame 63##NM_020317|C1orf63|57035|chromosome 1 open reading frame 63	0.96181	0.0	denovo_WM_7:41:0.847
chr15	94823670	94823773	reg1013839.p1	3.997	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-48863	+	AB463222 AM392685 BC146682 AK074980 BC140838 BC151132 AL136826 TSC_hg19_v1_chr15_-_93632430 AK074910 AK291365 NM_020211	-1191368	-	NM_001166287	-1191970	-	NM_001159643 NM_018349 AY656717 BC131527	17740	+	NM_001159644 BC025708 BC111024 AK002037	75588	+	TSC_hg19_v1_chr15_-_95870310 BC040875	1046598	-	AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##AM392685|RGMA|56963|RGM domain family, member A##BC146682|RGMA|56963|RGM domain family, member A##AK074980|RGMA|56963|RGM domain family, member A##BC140838|RGMA|56963|RGM domain family, member A##BC151132|RGMA|56963|RGM domain family, member A##AL136826|RGMA|56963|RGM domain family, member A##AK074910|RGMA|56963|RGM domain family, member A##NM_020211|RGMA|56963|RGM domain family, member A##NM_001166287|RGMA|56963|RGM domain family, member A##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456	1.975513	0.0	denovo_WM_7:8:0.914	denovo_WM_7:-69:0.928
chr17	73987345	73987525	reg1000154.p1	3.997	+	TSC_hg19_v1_chr17_-_73975509 NM_001185039 NM_004035 NM_007292	-11908	-	BC008767 TSC_hg19_v1_chr17_-_73975478	-11969	-	NM_001113324 BC047782 TSC_hg19_v1_chr17_+_73975332 BX647274 BX648576 AK097104	-12113	+	NM_001258 TSC_hg19_v1_chr17_+_73997033	9574	+	BC126103 BC126105 BC143813 BC143814 U53786 TSC_hg19_v1_chr17_-_74023388	35915	-	TSC_hg19_v1_chr17_-_74023511 NM_001988 AK290333	36079	-	NM_001185039|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_004035|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_007292|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##BC008767|ACOX1|51|acyl-CoA oxidase 1, palmitoyl##NM_001113324|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##BC047782|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##BX647274|TEN1-CDK3|100529145|TEN1-CDK3 readthrough##BX648576|TEN1|100134934|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)##AK097104|TEN1-CDK3|100529145|TEN1-CDK3 readthrough##NM_001258|CDK3|1018|cyclin-dependent kinase 3##BC126103|EVPL|2125|envoplakin##BC126105|EVPL|2125|envoplakin##BC143813|EVPL|2125|envoplakin##BC143814|EVPL|2125|envoplakin##U53786|EVPL|2125|envoplakin##NM_001988|EVPL|2125|envoplakin##AK290333|EVPL|2125|envoplakin	0.0	0.0	
chr17	74721928	74722068	reg1018350.p2	3.997	+	BC016837 TSC_hg19_v1_chr17_-_74722026	-6	-	TSC_hg19_v1_chr17_-_74707067 BC053983	-14898	-	TSC_hg19_v1_chr17_-_74707048 AB590448 NM_001008528 NM_001008529 NM_198530 BC094776	-14966	-	TSC_hg19_v1_chr17_-_74722582 AB073711 AB011157 BC066654	557	-	TSC_hg19_v1_chr17_-_74722619 AK314541	618	-	TSC_hg19_v1_chr17_-_74722636 AK021780	645	-	BC016837|JMJD6|23210|jumonji domain containing 6##BC053983|MXRA7|439921|matrix-remodelling associated 7##NM_001008528|MXRA7|439921|matrix-remodelling associated 7##NM_001008529|MXRA7|439921|matrix-remodelling associated 7##NM_198530|MXRA7|439921|matrix-remodelling associated 7##BC094776|MXRA7|439921|matrix-remodelling associated 7##AB073711|JMJD6|23210|jumonji domain containing 6##AB011157|JMJD6|23210|jumonji domain containing 6##BC066654|JMJD6|23210|jumonji domain containing 6##AK314541|JMJD6|23210|jumonji domain containing 6##AK021780|JMJD6|23210|jumonji domain containing 6	0.999147	0.0	denovo_WM_7:-22:0.739
chr2	123495364	123495443	reg1012078.p1	3.997	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-982166	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-1000938	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-1087758	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1287461	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	3918304	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	3918389	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.0	0.0	
chr2	163154521	163154651	reg1012516.p1	3.997	+	BC026250 AF007822 U76833 AK315448 AK309260 AK297118 NM_004460 U09278	-54626	-	NM_002054	-145673	-	BC065265 NM_001935 TSC_hg19_v1_chr2_-_162931062	-223530	-	CU692330 BC111750 AY017378 AF095844 NM_022168 BC078180 TSC_hg19_v1_chr2_-_163175195 BC046208 AK292941 AK314611	20497	-	NM_012198 TSC_hg19_v1_chr2_+_163200610	46012	+	TSC_hg19_v1_chr2_+_163200633 AK312349 M81637 BC005214 AB209768 AB529141 CU675051 AK295413	46175	+	BC026250|FAP|2191|fibroblast activation protein, alpha##AF007822|FAP|2191|fibroblast activation protein, alpha##U76833|FAP|2191|fibroblast activation protein, alpha##AK315448|FAP|2191|fibroblast activation protein, alpha##AK309260|FAP|2191|fibroblast activation protein, alpha##AK297118|FAP|2191|fibroblast activation protein, alpha##NM_004460|FAP|2191|fibroblast activation protein, alpha##U09278|FAP|2191|fibroblast activation protein, alpha##NM_002054|GCG|2641|glucagon##BC065265|DPP4|1803|dipeptidyl-peptidase 4##NM_001935|DPP4|1803|dipeptidyl-peptidase 4##BC111750|IFIH1|64135|interferon induced with helicase C domain 1##AY017378|IFIH1|64135|interferon induced with helicase C domain 1##AF095844|IFIH1|64135|interferon induced with helicase C domain 1##NM_022168|IFIH1|64135|interferon induced with helicase C domain 1##BC078180|IFIH1|64135|interferon induced with helicase C domain 1##BC046208|IFIH1|64135|interferon induced with helicase C domain 1##AK292941|IFIH1|64135|interferon induced with helicase C domain 1##AK314611|IFIH1|64135|interferon induced with helicase C domain 1##NM_012198|GCA|25801|grancalcin, EF-hand calcium binding protein##AK312349|GCA|25801|grancalcin, EF-hand calcium binding protein##M81637|GCA|25801|grancalcin, EF-hand calcium binding protein##BC005214|GCA|25801|grancalcin, EF-hand calcium binding protein##AB209768|GCA|25801|grancalcin, EF-hand calcium binding protein##AK295413|GCA|25801|grancalcin, EF-hand calcium binding protein	0.818652	0.989277	denovo_WM_7:-11:0.255	denovo_WM_7:-12:0.564	CTCF.p2:51:0.989
chr5	118406668	118406809	reg1013708.p2	3.997	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	-82500	-	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-2496224	-	TSC_hg19_v1_chr5_+_115898220 D28352	-2508514	+	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	73	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	427	+	NM_001077654 TSC_hg19_v1_chr5_+_118604492 AK097884 AK001931	197720	+	BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1##NM_001077654|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK097884|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001931|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8	0.0	0.0	
chrX	69653776	69653842	reg1014657.p1	3.997	+	NM_001171191 NM_001171192 NM_001171193 NM_017711 AB048363 AK299255 AK310090 AK301025 AK316035 AK000214 AK307778 BC032009 AY358986	-10777	+	NM_012310 AK313133 BC003664 BC038459 AF071592 BC049218 AB208797 BC050548 BC011801	-143878	+	TSC_hg19_v1_chrX_-_69509768 BC012996 AY358829 AK024746 AK311539 AF151061 NM_016484 BX537725	-144017	-	AB209328 NM_021120 AK315041 U49089	10952	+	TSC_hg19_v1_chrX_+_69672143 AB033058 NM_020730	18366	+	TSC_hg19_v1_chrX_+_69672415 AK304020 AK316518	18597	+	NM_001171191|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_001171192|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_001171193|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_017711|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AB048363|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK299255|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK310090|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK301025|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK316035|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK000214|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AK307778|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##BC032009|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##AY358986|GDPD2|54857|glycerophosphodiester phosphodiesterase domain containing 2##NM_012310|KIF4A|24137|kinesin family member 4A##AK313133|KIF4A|24137|kinesin family member 4A##BC003664|KIF4A|24137|kinesin family member 4A##BC038459|KIF4A|24137|kinesin family member 4A##AF071592|KIF4A|24137|kinesin family member 4A##BC049218|KIF4A|24137|kinesin family member 4A##AB208797|KIF4A|24137|kinesin family member 4A##BC050548|KIF4A|24137|kinesin family member 4A##BC011801|KIF4A|24137|kinesin family member 4A##BC012996|PDZD11|51248|PDZ domain containing 11##AY358829|PDZD11|51248|PDZ domain containing 11##AK024746|PDZD11|51248|PDZ domain containing 11##AK311539|PDZD11|51248|PDZ domain containing 11##AF151061|PDZD11|51248|PDZ domain containing 11##NM_016484|PDZD11|51248|PDZ domain containing 11##BX537725|PDZD11|51248|PDZ domain containing 11##AB209328|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_021120|DLG3|1741|discs, large homolog 3 (Drosophila)##AK315041|DLG3|1741|discs, large homolog 3 (Drosophila)##U49089|DLG3|1741|discs, large homolog 3 (Drosophila)##AB033058|DLG3|1741|discs, large homolog 3 (Drosophila)##NM_020730|DLG3|1741|discs, large homolog 3 (Drosophila)##AK304020|DLG3|1741|discs, large homolog 3 (Drosophila)##AK316518|DLG3|1741|discs, large homolog 3 (Drosophila)	0.0	0.972055	CTCF.p2:8:0.972
chr10	73137306	73137417	reg1015635.p2	3.996	+	BC063019 TSC_hg19_v1_chr10_+_73079044 AY288928	-58315	+	AX775915 AX775917 AX775919 AX775921 NM_001174098 NM_018344 TSC_hg19_v1_chr10_+_73079015 AK316152 AY358686 BC120996 BC120997 AK304503 BC050589 AK314497	-58336	+	TSC_hg19_v1_chr10_+_72972326 AK128132 NM_001244889 NM_170744 AY358351 AB096256	-164981	+	TSC_hg19_v1_chr10_+_73156683 BC011570 NM_001171930 NM_001171931 NM_001171932 NM_022124 NM_052836 BC032581 BC139903 BC108254 BC065284 BC136976 BC136977	19377	+	AK123442 BC071608 NM_001164375 TSC_hg19_v1_chr10_-_73479685	342231	-	AK074172 NM_001168390	360219	-	BC063019|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY288928|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775915|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775917|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775919|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AX775921|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_001174098|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##NM_018344|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK316152|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AY358686|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120996|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC120997|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK304503|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##BC050589|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK314497|SLC29A3|55315|solute carrier family 29 (nucleoside transporters), member 3##AK128132|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_001244889|UNC5B|219699|unc-5 homolog B (C. elegans)##NM_170744|UNC5B|219699|unc-5 homolog B (C. elegans)##AY358351|UNC5B|219699|unc-5 homolog B (C. elegans)##AB096256|UNC5B|219699|unc-5 homolog B (C. elegans)##BC011570|CDH23|64072|cadherin-related 23##NM_001171930|CDH23|64072|cadherin-related 23##NM_001171931|CDH23|64072|cadherin-related 23##NM_001171932|CDH23|64072|cadherin-related 23##NM_022124|CDH23|64072|cadherin-related 23##NM_052836|CDH23|64072|cadherin-related 23##BC032581|CDH23|64072|cadherin-related 23##BC139903|CDH23|64072|cadherin-related 23##BC108254|CDH23|64072|cadherin-related 23##BC065284|CDH23|64072|cadherin-related 23##BC136976|CDH23|64072|cadherin-related 23##BC136977|CDH23|64072|cadherin-related 23##AK123442|C10orf105|414152|chromosome 10 open reading frame 105##BC071608|C10orf105|414152|chromosome 10 open reading frame 105##NM_001164375|C10orf105|414152|chromosome 10 open reading frame 105##AK074172|C10orf105|414152|chromosome 10 open reading frame 105##NM_001168390|C10orf105|414152|chromosome 10 open reading frame 105	0.0	0.397736	CTCF.p2:-17:0.398
chr1	21847571	21847696	reg1007983.p1	3.996	+	TSC_hg19_v1_chr1_+_21835918 AK295608 AK312667 AK298085 BC021289 BC066116 BC090861 AB011406 AH007388 X95994 AK293184 BC110909	-11701	+	TSC_hg19_v1_chr1_+_21835843 NM_000478 NM_001127501 NM_001177520 AB209814	-11774	+	TSC_hg19_v1_chr1_+_21766643 AK299840 AK095602 NM_032264 AK314597 BC024011 AK292580 AL136890	-80951	+	AB003930 TSC_hg19_v1_chr1_-_21949064	101404	-	BC054490 TSC_hg19_v1_chr1_-_21978334 NM_001145658	130714	-	AB007943 M64788 TSC_hg19_v1_chr1_-_21995851 NM_001145657 NM_002885	148200	-	AK295608|ALPL|249|alkaline phosphatase, liver/bone/kidney##AK312667|ALPL|249|alkaline phosphatase, liver/bone/kidney##AK298085|ALPL|249|alkaline phosphatase, liver/bone/kidney##BC021289|ALPL|249|alkaline phosphatase, liver/bone/kidney##BC066116|ALPL|249|alkaline phosphatase, liver/bone/kidney##BC090861|ALPL|249|alkaline phosphatase, liver/bone/kidney##AB011406|ALPL|249|alkaline phosphatase, liver/bone/kidney##X95994|ALPL|249|alkaline phosphatase, liver/bone/kidney##AK293184|ALPL|249|alkaline phosphatase, liver/bone/kidney##BC110909|ALPL|249|alkaline phosphatase, liver/bone/kidney##NM_000478|ALPL|249|alkaline phosphatase, liver/bone/kidney##NM_001127501|ALPL|249|alkaline phosphatase, liver/bone/kidney##NM_001177520|ALPL|249|alkaline phosphatase, liver/bone/kidney##AB209814|ALPL|249|alkaline phosphatase, liver/bone/kidney##AK299840|NBPF3|84224|neuroblastoma breakpoint family, member 3##AK095602|NBPF3|84224|neuroblastoma breakpoint family, member 3##NM_032264|NBPF3|84224|neuroblastoma breakpoint family, member 3##AK314597|NBPF3|84224|neuroblastoma breakpoint family, member 3##BC024011|NBPF3|84224|neuroblastoma breakpoint family, member 3##AK292580|NBPF3|84224|neuroblastoma breakpoint family, member 3##AL136890|NBPF3|84224|neuroblastoma breakpoint family, member 3##AB003930|RAP1GAP|5909|RAP1 GTPase activating protein##BC054490|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145658|RAP1GAP|5909|RAP1 GTPase activating protein##AB007943|RAP1GAP|5909|RAP1 GTPase activating protein##M64788|RAP1GAP|5909|RAP1 GTPase activating protein##NM_001145657|RAP1GAP|5909|RAP1 GTPase activating protein##NM_002885|RAP1GAP|5909|RAP1 GTPase activating protein	0.812854	0.0	denovo_WM_7:58:0.789
chr12	27432604	27432764	reg1015626.p1	3.996	+	TSC_hg19_v1_chr12_+_27397225 AK304755	-35459	+	TSC_hg19_v1_chr12_+_27397187 AK291055	-35497	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	-35560	+	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	53195	+	BC043511 TSC_hg19_v1_chr12_-_27599649	166920	-	NM_001145010	187058	+	AK304755|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70	1.981218	0.0	denovo_WM_7:-52:0.501	denovo_WM_7:-53:0.495	denovo_WM_7:-68:0.985
chr1	28441922	28442102	reg1013922.p2	3.996	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-26888	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-155494	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-180451	+	NM_000952 NM_001164723	61442	-	S52624 AK292053 NM_001164721 NM_001164722	78400	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	117519	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.0	0.0	
chr1	33593691	33593780	reg1007843.p1	3.996	+	TSC_hg19_v1_chr1_+_33546755 BC028128 NM_052998 AK095127 AL832640 AK057051 AK315677 AY325129 BC010449	-47002	+	TSC_hg19_v1_chr1_-_33502485 NM_001199199 NM_001625 NM_013411	-91235	-	AB005622 TSC_hg19_v1_chr1_-_33502470	-91260	-	TSC_hg19_v1_chr1_-_33647643 AX775827 AX775829 AX776017 AK122896 NM_018207	53913	-	TSC_hg19_v1_chr1_+_33722167 NM_152493	128430	+	TSC_hg19_v1_chr1_-_33813262 AK055807	219561	-	BC028128|ADC|113451|arginine decarboxylase##NM_052998|ADC|113451|arginine decarboxylase##AK095127|ADC|113451|arginine decarboxylase##AL832640|ADC|113451|arginine decarboxylase##AK057051|ADC|113451|arginine decarboxylase##AK315677|ADC|113451|arginine decarboxylase##AY325129|ADC|113451|arginine decarboxylase##BC010449|ADC|113451|arginine decarboxylase##NM_001199199|AK2|204|adenylate kinase 2##NM_001625|AK2|204|adenylate kinase 2##NM_013411|AK2|204|adenylate kinase 2##AB005622|AK2|204|adenylate kinase 2##AK122896|TRIM62|55223|tripartite motif containing 62##NM_018207|TRIM62|55223|tripartite motif containing 62##NM_152493|ZNF362|149076|zinc finger protein 362	0.996485	0.0	
chr1	40132652	40132788	reg1010051.p1	3.996	+	TSC_hg19_v1_chr1_-_40105343 NM_014571	-27375	-	AF311885 EU446871 TSC_hg19_v1_chr1_-_40105307 AB463718 AJ272215 BC006087	-27404	-	TSC_hg19_v1_chr1_-_40098640 AK300463	-34065	-	AF331801 AY028778 BC103879 BC103880 NM_032526	4989	-	TSC_hg19_v1_chr1_-_40157103 BC030827 AL136591 NM_016257 AK294412 AK312314 AK294813	24382	-	NM_001195007 NM_006112 NM_203456 TSC_hg19_v1_chr1_+_40204553 AK313666 BC008451 AL833576 AF104012 AF104013 AK094660 AK304694 BC107736	71818	+	NM_014571|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AF311885|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##EU446871|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AJ272215|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##BC006087|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AK300463|HEYL|26508|hairy/enhancer-of-split related with YRPW motif-like##AF331801|NT5C1A|84618|5'-nucleotidase, cytosolic IA##AY028778|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103879|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC103880|NT5C1A|84618|5'-nucleotidase, cytosolic IA##NM_032526|NT5C1A|84618|5'-nucleotidase, cytosolic IA##BC030827|HPCAL4|51440|hippocalcin like 4##AL136591|HPCAL4|51440|hippocalcin like 4##NM_016257|HPCAL4|51440|hippocalcin like 4##AK294412|HPCAL4|51440|hippocalcin like 4##AK312314|HPCAL4|51440|hippocalcin like 4##AK294813|HPCAL4|51440|hippocalcin like 4##NM_001195007|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_006112|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##NM_203456|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK313666|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC008451|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AL833576|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104012|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AF104013|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK094660|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##AK304694|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)##BC107736|PPIE|10450|peptidylprolyl isomerase E (cyclophilin E)	0.0	0.0	
chr19	11686826	11686973	reg1006284.p4	3.996	+	TSC_hg19_v1_chr19_-_11670046 AK097850 NM_032377	-16866	-	BC022015 NM_001299 AK316406 BC036307 D17408 U37019 TSC_hg19_v1_chr19_+_11649667 AK223234 AK301888 AK313255 S80560 CU692454	-37240	+	BC005119 BC000193 AK131241 TSC_hg19_v1_chr19_-_11639952 BC008279 NM_001142464 NM_001142465 NM_016581	-46942	-	X14618 TSC_hg19_v1_chr19_-_11688461	1552	-	TSC_hg19_v1_chr19_-_11688497 BC025414 J04430	1591	-	TSC_hg19_v1_chr19_-_11688516 AK290717 NM_001611	1631	-	AK097850|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##NM_032377|ELOF1|84337|elongation factor 1 homolog (S. cerevisiae)##BC022015|CNN1|1264|calponin 1, basic, smooth muscle##NM_001299|CNN1|1264|calponin 1, basic, smooth muscle##AK316406|CNN1|1264|calponin 1, basic, smooth muscle##BC036307|CNN1|1264|calponin 1, basic, smooth muscle##D17408|CNN1|1264|calponin 1, basic, smooth muscle##U37019|CNN1|1264|calponin 1, basic, smooth muscle##AK223234|CNN1|1264|calponin 1, basic, smooth muscle##AK301888|CNN1|1264|calponin 1, basic, smooth muscle##AK313255|CNN1|1264|calponin 1, basic, smooth muscle##S80560|CNN1|1264|calponin 1, basic, smooth muscle##BC005119|ECSIT|51295|ECSIT homolog (Drosophila)##BC000193|ECSIT|51295|ECSIT homolog (Drosophila)##BC008279|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142464|ECSIT|51295|ECSIT homolog (Drosophila)##NM_001142465|ECSIT|51295|ECSIT homolog (Drosophila)##NM_016581|ECSIT|51295|ECSIT homolog (Drosophila)##X14618|ACP5|54|acid phosphatase 5, tartrate resistant##BC025414|ACP5|54|acid phosphatase 5, tartrate resistant##J04430|ACP5|54|acid phosphatase 5, tartrate resistant##AK290717|ACP5|54|acid phosphatase 5, tartrate resistant##NM_001611|ACP5|54|acid phosphatase 5, tartrate resistant	1.602991	0.0	denovo_WM_7:-45:0.522	denovo_WM_7:-66:0.237	denovo_WM_7:-67:0.237	denovo_WM_7:-68:0.237	denovo_WM_7:-69:0.237
chr3	11420818	11420913	reg1013170.p1	3.996	+	AK314504 TSC_hg19_v1_chr3_+_11314092 BC000091 AF094516	-106769	+	AK298833 TSC_hg19_v1_chr3_+_11314082 AK075221 AK303694	-106788	+	TSC_hg19_v1_chr3_+_11314033 NM_001136031 NM_001144912 NM_006395	-106859	+	TSC_hg19_v1_chr3_-_11610264 AK308761 NM_001128221	189465	-	AK307708 TSC_hg19_v1_chr3_-_11623831 NM_001128220	202968	-	TSC_hg19_v1_chr3_-_11685397 NM_001128219	264531	-	AK314504|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##BC000091|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AF094516|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AK298833|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AK075221|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AK303694|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##NM_001136031|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##NM_001144912|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##NM_006395|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AK308761|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128221|VGLL4|9686|vestigial like 4 (Drosophila)##AK307708|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128220|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128219|VGLL4|9686|vestigial like 4 (Drosophila)	0.0	0.0	
chr4	94049190	94049278	reg1014549.p2	3.996	+	AB209318 NM_001510 AK308611	-823642	+	BC051694 NM_207491	-2893053	+	AK097436 NM_001145065 AK310825 AB051467 BC021681	-3000516	+	BC113623 BC113625 BC069145 AB464463 BC069594 BC069604 CU686920 EU446465 HQ258191 NM_005172 BC069578	700827	+	TSC_hg19_v1_chr4_+_95128758 NM_001128430 AK027490 BC017953 AB032948	1079577	+	TSC_hg19_v1_chr4_+_95129015 NM_001128429 NM_020159 BC045534 AY008271 BC041800	1079880	+	AB209318|GRID2|2895|glutamate receptor, ionotropic, delta 2##NM_001510|GRID2|2895|glutamate receptor, ionotropic, delta 2##AK308611|GRID2|2895|glutamate receptor, ionotropic, delta 2##BC051694|FAM190A|401145|family with sequence similarity 190, member A##NM_207491|FAM190A|401145|family with sequence similarity 190, member A##AK097436|FAM190A|401145|family with sequence similarity 190, member A##NM_001145065|FAM190A|401145|family with sequence similarity 190, member A##AK310825|FAM190A|401145|family with sequence similarity 190, member A##AB051467|FAM190A|401145|family with sequence similarity 190, member A##BC021681|FAM190A|401145|family with sequence similarity 190, member A##BC113623|ATOH1|474|atonal homolog 1 (Drosophila)##BC113625|ATOH1|474|atonal homolog 1 (Drosophila)##BC069145|ATOH1|474|atonal homolog 1 (Drosophila)##BC069594|ATOH1|474|atonal homolog 1 (Drosophila)##BC069604|ATOH1|474|atonal homolog 1 (Drosophila)##EU446465|ATOH1|474|atonal homolog 1 (Drosophila)##HQ258191|ATOH1|474|atonal homolog 1 (Drosophila)##NM_005172|ATOH1|474|atonal homolog 1 (Drosophila)##BC069578|ATOH1|474|atonal homolog 1 (Drosophila)##NM_001128430|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AK027490|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC017953|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AB032948|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_001128429|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##NM_020159|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC045534|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##AY008271|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1##BC041800|SMARCAD1|56916|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	1.966855	0.0	denovo_WM_7:-30:0.478	denovo_WM_7:-31:0.319	denovo_WM_7:-46:0.326	denovo_WM_7:-47:0.484
chr5	42992148	42992328	reg1015687.p1	3.996	+	Z11793 BC040075 BC046152 BC058919 AK225801 AL833145 BC005244 BC015875 BC030009 TSC_hg19_v1_chr5_-_42811995 NM_001085486 NM_001093726 NM_005410	-180247	-	AK303469 NM_001134848 AK127368 BC015985 BC039102 TSC_hg19_v1_chr5_+_42756958	-235300	+	BC136496 NM_001242460 NM_001242461 NM_001242462	-426274	+	TSC_hg19_v1_chr5_-_42993436 AK056817	1208	-	AB463523 BC067873 AY032883 NM_001014279	48058	-	AK307963 TSC_hg19_v1_chr5_+_43121018 BC045109	128763	+	Z11793|SEPP1|6414|selenoprotein P, plasma, 1##BC040075|SEPP1|6414|selenoprotein P, plasma, 1##BC046152|SEPP1|6414|selenoprotein P, plasma, 1##BC058919|SEPP1|6414|selenoprotein P, plasma, 1##AK225801|SEPP1|6414|selenoprotein P, plasma, 1##AL833145|SEPP1|6414|selenoprotein P, plasma, 1##BC005244|SEPP1|6414|selenoprotein P, plasma, 1##BC015875|SEPP1|6414|selenoprotein P, plasma, 1##BC030009|SEPP1|6414|selenoprotein P, plasma, 1##NM_001085486|SEPP1|6414|selenoprotein P, plasma, 1##NM_001093726|SEPP1|6414|selenoprotein P, plasma, 1##NM_005410|SEPP1|6414|selenoprotein P, plasma, 1##AK303469|CCDC152|100129792|coiled-coil domain containing 152##NM_001134848|CCDC152|100129792|coiled-coil domain containing 152##AK127368|CCDC152|100129792|coiled-coil domain containing 152##BC015985|CCDC152|100129792|coiled-coil domain containing 152##BC039102|CCDC152|100129792|coiled-coil domain containing 152##BC136496|GHR|2690|growth hormone receptor##NM_001242460|GHR|2690|growth hormone receptor##NM_001242461|GHR|2690|growth hormone receptor##NM_001242462|GHR|2690|growth hormone receptor##AK056817|FLJ32255|643977|uncharacterized LOC643977##BC067873|C5orf39|389289|chromosome 5 open reading frame 39##AY032883|C5orf39|389289|chromosome 5 open reading frame 39##NM_001014279|C5orf39|389289|chromosome 5 open reading frame 39##AK307963|ZNF131|7690|zinc finger protein 131	0.0	0.0	
chrX	5597135	5597201	reg1010199.p2	3.996	+	TSC_hg19_v1_chrX_-_3631668 NM_005044	-1965450	-	TSC_hg19_v1_chrX_-_3631645 X85545	-1965523	-	TSC_hg19_v1_chrX_-_3631619 BC041073	-1965626	-	AB033086 AF376803 AX773938 NM_020742	548719	-	AK055471 BC034018 NM_181332	549512	-	AF167078 AF167079 NM_016379	855990	-	NM_005044|PRKX|5613|protein kinase, X-linked##X85545|PRKX|5613|protein kinase, X-linked##BC041073|PRKX|5613|protein kinase, X-linked##AB033086|NLGN4X|57502|neuroligin 4, X-linked##AF376803|NLGN4X|57502|neuroligin 4, X-linked##AX773938|NLGN4X|57502|neuroligin 4, X-linked##NM_020742|NLGN4X|57502|neuroligin 4, X-linked##AK055471|NLGN4X|57502|neuroligin 4, X-linked##BC034018|NLGN4X|57502|neuroligin 4, X-linked##NM_181332|NLGN4X|57502|neuroligin 4, X-linked##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016379|VCX3A|51481|variable charge, X-linked 3A	0.99506	0.0	
chr1	109203561	109203673	reg1016573.p1	3.995	+	BC127898 BC150530 NM_001010883 BC140863 BC140865	-100575	+	NM_001143987 NM_001143988 BC125161 BC125162	-210695	+	BC125161 BC125162 AK057395 AK316438 AK302318 NM_001143989	-416935	-	BC088366 TSC_hg19_v1_chr1_-_109203698 NM_001102592 BC012198	151	-	TSC_hg19_v1_chr1_-_109204071 AK311542 AK310152 AK055087 NM_144584	474	-	TSC_hg19_v1_chr1_+_109234948 NM_018061 BC040127 BC053838 BC034581 BC007757 BC024275 BC009453 BC016296 AL833950 AK001192 BC130346 BC132963 BC144243 BC107801 CU691032	31443	+	BC127898|FAM102B|284611|family with sequence similarity 102, member B##BC150530|FAM102B|284611|family with sequence similarity 102, member B##NM_001010883|FAM102B|284611|family with sequence similarity 102, member B##BC140863|FAM102B|284611|family with sequence similarity 102, member B##BC140865|FAM102B|284611|family with sequence similarity 102, member B##NM_001143987|NBPF6|653149|neuroblastoma breakpoint family, member 6##NM_001143988|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC125161|NBPF6|653149|neuroblastoma breakpoint family, member 6##BC125162|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK057395|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK316438|NBPF4|148545|neuroblastoma breakpoint family, member 4##AK302318|NBPF4|148545|neuroblastoma breakpoint family, member 4##NM_001143989|NBPF4|148545|neuroblastoma breakpoint family, member 4##BC088366|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_001102592|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##BC012198|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK311542|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK310152|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##AK055087|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_144584|HENMT1|113802|HEN1 methyltransferase homolog 1 (Arabidopsis)##NM_018061|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC040127|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC053838|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC034581|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC007757|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC024275|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC009453|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC016296|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##AL833950|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##AK001192|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC130346|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC132963|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC144243|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B##BC107801|PRPF38B|55119|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	1.24661	0.0	denovo_WM_7:-48:0.274	denovo_WM_7:-60:0.395	denovo_WM_7:-63:0.531
chr14	76521510	76521690	reg1017869.p1	3.995	+	TSC_hg19_v1_chr14_+_76452112 NM_001102564 NM_052873 AK302944 AK056735 BC032566 BC010436 BC042852 CU679711	-69508	+	NM_003239	-73509	-	AK313564 TSC_hg19_v1_chr14_-_76447479 X14149 J03241	-74129	-	TSC_hg19_v1_chr14_+_76618258 NM_017926 NM_017972 BC058032	96656	+	TSC_hg19_v1_chr14_+_76618279 AB032978	96677	+	AK000696 TSC_hg19_v1_chr14_+_76618289	96706	+	NM_001102564|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##NM_052873|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##AK302944|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##AK056735|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##BC010436|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##BC042852|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##NM_003239|TGFB3|7043|transforming growth factor, beta 3##AK313564|TGFB3|7043|transforming growth factor, beta 3##X14149|TGFB3|7043|transforming growth factor, beta 3##J03241|TGFB3|7043|transforming growth factor, beta 3##NM_017926|C14orf118|55668|chromosome 14 open reading frame 118##NM_017972|C14orf118|55668|chromosome 14 open reading frame 118##BC058032|C14orf118|55668|chromosome 14 open reading frame 118##AB032978|C14orf118|55668|chromosome 14 open reading frame 118##AK000696|C14orf118|55668|chromosome 14 open reading frame 118	1.458524	0.0	denovo_WM_7:-67:0.448	denovo_WM_7:96:0.957
chr16	72042533	72042606	reg1014619.p2	3.995	+	AY164485 NM_181536	-8693	-	TSC_hg19_v1_chr16_+_71929438 AK295066 AK301918 AK057902 AK293022 AK297088 AB097052 D79996 BC000430 BC004359 NM_014761 BC000116	-113126	+	TSC_hg19_v1_chr16_+_71929421 AK291388 AK297336 BC103745	-113155	+	AK292293 TSC_hg19_v1_chr16_+_72042642 NM_001361 BC065245	25	+	NM_001126102 NM_005143 AK314700 BC107587 AK055872 BC017862 BC058031 BC070299 K01763 L29394 BC121124 BC121125 X00637 K00422	45954	+	NM_020995	54555	+	AY164485|PKD1L3|342372|polycystic kidney disease 1-like 3##NM_181536|PKD1L3|342372|polycystic kidney disease 1-like 3##AK295066|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK301918|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK057902|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK293022|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297088|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AB097052|IST1|9798|increased sodium tolerance 1 homolog (yeast)##D79996|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000430|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC004359|IST1|9798|increased sodium tolerance 1 homolog (yeast)##NM_014761|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC000116|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK291388|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK297336|IST1|9798|increased sodium tolerance 1 homolog (yeast)##BC103745|IST1|9798|increased sodium tolerance 1 homolog (yeast)##AK292293|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001361|DHODH|1723|dihydroorotate dehydrogenase (quinone)##BC065245|DHODH|1723|dihydroorotate dehydrogenase (quinone)##NM_001126102|HP|3240|haptoglobin##NM_005143|HP|3240|haptoglobin##AK314700|HP|3240|haptoglobin##BC107587|HP|3240|haptoglobin##AK055872|HP|3240|haptoglobin##BC017862|HP|3240|haptoglobin##BC058031|HP|3240|haptoglobin##BC070299|HP|3240|haptoglobin##K01763|HP|3240|haptoglobin##L29394|HP|3240|haptoglobin##BC121124|HP|3240|haptoglobin##BC121125|HP|3240|haptoglobin##X00637|HP|3240|haptoglobin##K00422|HP|3240|haptoglobin##NM_020995|HPR|3250|haptoglobin-related protein	0.0	0.0	
chr2	149416850	149416982	reg1014808.p2	3.995	+	NM_015630 AF286904 BC093818 BC093820	-14313	+	TSC_hg19_v1_chr2_+_149402332 AK125789	-14580	+	NM_181742	-637744	-	TSC_hg19_v1_chr2_+_149632795 NM_004522 BC002721 BC025961 AB011103	215880	+	BC017298 TSC_hg19_v1_chr2_+_149632844	215924	+	TSC_hg19_v1_chr2_+_149633176 AB384491	216263	+	NM_015630|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##AF286904|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##BC093818|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##BC093820|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##AK125789|EPC2|26122|enhancer of polycomb homolog 2 (Drosophila)##NM_181742|ORC4|5000|origin recognition complex, subunit 4##NM_004522|KIF5C|3800|kinesin family member 5C##BC002721|KIF5C|3800|kinesin family member 5C##BC025961|KIF5C|3800|kinesin family member 5C##AB011103|KIF5C|3800|kinesin family member 5C##BC017298|KIF5C|3800|kinesin family member 5C	0.0	0.0	
chr10	1685381	1685542	reg1010090.p1	3.994	+	TSC_hg19_v1_chr10_+_1102822 AK292591	-582635	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-582692	+	BC057827 TSC_hg19_v1_chr10_-_1102645	-582809	-	AF034837 NM_018702	94208	-	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	1424286	+	AK092597 AX747622 NM_001242339	1425357	+	AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC057827|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet	0.0	0.015311	
chr11	75597839	75597963	reg1011776.p1	3.994	+	TSC_hg19_v1_chr11_+_75526254 BC013176 AB012958 BC064837 AK222772	-71623	+	NM_003369 TSC_hg19_v1_chr11_+_75526233 AK291011	-71679	+	TSC_hg19_v1_chr11_+_75479822 AB048286 AY780646 AY358532 AL834287 AF384161 CU677247 AY780647	-117978	+	AB590784 BT019492 BC074790 BC074791 BC113386 BC113388 AB070218 NM_004626 Y12692 AK313570	319611	-	TSC_hg19_v1_chr11_-_75921806 AK075540	323903	-	TSC_hg19_v1_chr11_-_76091995 AB590785 AF007393 AF081567 HQ258648 NM_004705 AK291843 BC117138 BC117140 BC110304	494107	-	BC013176|UVRAG|7405|UV radiation resistance associated gene##AB012958|UVRAG|7405|UV radiation resistance associated gene##BC064837|UVRAG|7405|UV radiation resistance associated gene##AK222772|UVRAG|7405|UV radiation resistance associated gene##NM_003369|UVRAG|7405|UV radiation resistance associated gene##AK291011|UVRAG|7405|UV radiation resistance associated gene##AB048286|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY358532|DGAT2|84649|diacylglycerol O-acyltransferase 2##AL834287|DGAT2|84649|diacylglycerol O-acyltransferase 2##AF384161|DGAT2|84649|diacylglycerol O-acyltransferase 2##AY780647|DGAT2|84649|diacylglycerol O-acyltransferase 2##BT019492|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074790|WNT11|7481|wingless-type MMTV integration site family, member 11##BC074791|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113386|WNT11|7481|wingless-type MMTV integration site family, member 11##BC113388|WNT11|7481|wingless-type MMTV integration site family, member 11##AB070218|WNT11|7481|wingless-type MMTV integration site family, member 11##NM_004626|WNT11|7481|wingless-type MMTV integration site family, member 11##Y12692|WNT11|7481|wingless-type MMTV integration site family, member 11##AK313570|WNT11|7481|wingless-type MMTV integration site family, member 11##AK075540|WNT11|7481|wingless-type MMTV integration site family, member 11##AF007393|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AF081567|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##HQ258648|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##NM_004705|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##AK291843|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117138|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC117140|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)##BC110304|PRKRIR|5612|protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)	0.991287	0.0	denovo_WM_7:2:0.891
chr12	123478390	123478456	reg1008433.p2	3.994	+	AB040953 TSC_hg19_v1_chr12_-_123466210	-12191	-	TSC_hg19_v1_chr12_+_123465384 AK027285	-13007	+	EU624491 AF267748 TSC_hg19_v1_chr12_+_123465249 AB035384 AK315759 BC001958 BC015569	-13258	+	BC141813 TSC_hg19_v1_chr12_-_123590060	111632	-	NM_020845	116551	-	AB040890 TSC_hg19_v1_chr12_-_123635595	157075	-	AB040953|ABCB9|23457|ATP-binding cassette, sub-family B (MDR/TAP), member 9##AK027285|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##EU624491|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##AF267748|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##AB035384|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##AK315759|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##BC001958|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##BC015569|ARL6IP4|51329|ADP-ribosylation-like factor 6 interacting protein 4##BC141813|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2##NM_020845|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2##AB040890|PITPNM2|57605|phosphatidylinositol transfer protein, membrane-associated 2	0.996175	0.0	denovo_WM_7:2:0.558
chr15	78867438	78867547	reg1014101.p2	3.994	+	TSC_hg19_v1_chr15_+_78857888 NM_000745 BC033639 U62434 AF385586 M83712 CU689678 DQ893355 DQ896674 EU176798 Y08419	-9548	+	TSC_hg19_v1_chr15_+_78832790 D28362 BC030529 AL110100 BC022445 BC093069 BC047667 D00763	-34676	+	NM_001102667 NM_001102668 NM_002789 TSC_hg19_v1_chr15_+_78832785 BC005361 AK055714 AK315526	-34727	+	AF385584 Y08418 BT006646 BT006897 CU674246 CU675253 M86383 M37981 TSC_hg19_v1_chr15_-_78913298 BC000513 BC001642 BC002996 U62432	45741	-	TSC_hg19_v1_chr15_-_78913532 BC098443 BC006114 NM_000743 NM_001166694	46080	-	TSC_hg19_v1_chr15_-_78933573 U62439 Y08416 BC096080 BC096081 BC096082 BC096083 NM_000750 U48861	66081	-	NM_000745|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##BC033639|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##U62434|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##AF385586|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##M83712|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ893355|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ896674|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##EU176798|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##Y08419|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##D28362|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC030529|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AL110100|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC022445|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC093069|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC047667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D00763|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102668|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_002789|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC005361|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK055714|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK315526|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AF385584|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##Y08418|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006646|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006897|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##M37981|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC000513|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC001642|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC002996|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##U62432|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC098443|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC006114|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_000743|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_001166694|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##U62439|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##Y08416|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096080|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096081|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096082|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096083|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##NM_000750|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##U48861|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4	0.0	0.0	
chr18	61617680	61617802	reg1013551.p1	3.994	+	NM_001123366	-1154	+	BC096217 BC096218 BC096219 BC096220 NM_005024 U35459	-34997	+	TSC_hg19_v1_chr18_+_61575223 AK314936	-42527	+	NM_001031848 NM_002640 NM_198833 AK300391 L40377 TSC_hg19_v1_chr18_+_61637345 BC034528 U92984 BX571754 AK313782	19572	+	AJ007611 NM_033646	1799746	+	TSC_hg19_v1_chr18_+_63417845 BC036786	1800125	+	NM_001123366|HMSD|284293|histocompatibility (minor) serpin domain containing##BC096217|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096218|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096219|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096220|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_005024|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##U35459|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##AK314936|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_001031848|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_002640|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_198833|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK300391|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##L40377|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BC034528|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##U92984|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BX571754|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK313782|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AJ007611|CDH7|1005|cadherin 7, type 2##NM_033646|CDH7|1005|cadherin 7, type 2##BC036786|CDH7|1005|cadherin 7, type 2	1.032315	0.0	
chr19	6586862	6587002	reg1012606.p1	3.994	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-55906	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-84615	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-105149	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	4100	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	4174	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	4226	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.993933	0.0	
chr20	50017022	50017100	reg1015432.p2	3.994	+	BC006367 TSC_hg19_v1_chr20_-_49639664 BC046629 AK290689 NM_002237	-377404	-	TSC_hg19_v1_chr20_+_49575366 BC015939 NM_014484 AB464623 AF102544 DQ892355 DQ895546 CU677523	-441693	+	AF007875 CR456926 D86198 NM_003859 CU678969 AK289569 BC016322 TSC_hg19_v1_chr20_-_49575070 BC007073 BC008427 BC008466	-441998	-	EU887573 EU887578 AB590566 TSC_hg19_v1_chr20_-_50159239 BC136418 BC144074	142078	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	142214	-	EU887574 EU887577 NM_001136021	162106	-	BC006367|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC046629|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##AK290689|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##NM_002237|KCNG1|3755|potassium voltage-gated channel, subfamily G, member 1##BC015939|MOCS3|27304|molybdenum cofactor synthesis 3##NM_014484|MOCS3|27304|molybdenum cofactor synthesis 3##AF102544|MOCS3|27304|molybdenum cofactor synthesis 3##DQ892355|MOCS3|27304|molybdenum cofactor synthesis 3##DQ895546|MOCS3|27304|molybdenum cofactor synthesis 3##AF007875|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##CR456926|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##D86198|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##NM_003859|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##AK289569|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC016322|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC007073|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008427|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##BC008466|DPM1|8813|dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit##EU887573|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887578|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC136418|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC144074|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	0.0	0.0	
chr3	44118818	44118933	reg1015443.p1	3.994	+	TSC_hg19_v1_chr3_+_43732466 NM_016006 BC021958 AK313811 AF151816 CU692422 DQ891175 DQ894357	-386454	+	TSC_hg19_v1_chr3_-_43663467 AK131223 AK295969 AK297949 AK096302 NM_001204831 NM_001204832 NM_001204833 NM_001204834 NM_018075	-455362	-	TSC_hg19_v1_chr3_-_43663446 AL832508 AK292368 BC038855	-455437	-	AK093476 AX748152 NM_001145030	164502	+	TSC_hg19_v1_chr3_+_44379620 AK292756 NM_001029840 BC009400	260755	+	TSC_hg19_v1_chr3_+_44379944 AK056593 NM_001029839 NM_173826 BC062587	261072	+	NM_016006|ABHD5|51099|abhydrolase domain containing 5##BC021958|ABHD5|51099|abhydrolase domain containing 5##AK313811|ABHD5|51099|abhydrolase domain containing 5##AF151816|ABHD5|51099|abhydrolase domain containing 5##DQ891175|ABHD5|51099|abhydrolase domain containing 5##DQ894357|ABHD5|51099|abhydrolase domain containing 5##AK131223|ANO10|55129|anoctamin 10##AK295969|ANO10|55129|anoctamin 10##AK297949|ANO10|55129|anoctamin 10##AK096302|ANO10|55129|anoctamin 10##NM_001204831|ANO10|55129|anoctamin 10##NM_001204832|ANO10|55129|anoctamin 10##NM_001204833|ANO10|55129|anoctamin 10##NM_001204834|ANO10|55129|anoctamin 10##NM_018075|ANO10|55129|anoctamin 10##AL832508|ANO10|55129|anoctamin 10##AK292368|ANO10|55129|anoctamin 10##BC038855|ANO10|55129|anoctamin 10##AK093476|C3orf77|375337|chromosome 3 open reading frame 77##NM_001145030|C3orf77|375337|chromosome 3 open reading frame 77##AK292756|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029840|C3orf23|285343|chromosome 3 open reading frame 23##BC009400|C3orf23|285343|chromosome 3 open reading frame 23##AK056593|C3orf23|285343|chromosome 3 open reading frame 23##NM_001029839|C3orf23|285343|chromosome 3 open reading frame 23##NM_173826|C3orf23|285343|chromosome 3 open reading frame 23##BC062587|C3orf23|285343|chromosome 3 open reading frame 23	0.0	0.148196	
chr7	30202354	30202443	reg1013397.p2	3.994	+	TSC_hg19_v1_chr7_+_30174621 NM_152793 AK096533 AL834391 AK098769 AB528783 AK294982	-27816	+	TSC_hg19_v1_chr7_+_30068250 BC002838 AF308300 AF380162 DQ893498 DQ896458 CU678236	-134107	+	TSC_hg19_v1_chr7_+_30068010 NM_001197026 NM_001197027 NM_032639 AK294857 BC053990 AK023180	-134397	+	AF513707 NM_147128	121524	+	TSC_hg19_v1_chr7_+_30324515 AF527533	122151	+	TSC_hg19_v1_chr7_+_30324634 AY054122	122258	+	NM_152793|C7orf41|222166|chromosome 7 open reading frame 41##AK096533|C7orf41|222166|chromosome 7 open reading frame 41##AL834391|C7orf41|222166|chromosome 7 open reading frame 41##AK098769|C7orf41|222166|chromosome 7 open reading frame 41##AK294982|C7orf41|222166|chromosome 7 open reading frame 41##BC002838|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF308300|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF380162|PLEKHA8P1|51054|pleckstrin homology domain containing, family A member 8 pseudogene 1##DQ893498|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##DQ896458|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197026|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_001197027|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##NM_032639|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK294857|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##BC053990|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AK023180|PLEKHA8|84725|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8##AF513707|ZNRF2|223082|zinc and ring finger 2##NM_147128|ZNRF2|223082|zinc and ring finger 2##AF527533|ZNRF2|223082|zinc and ring finger 2##AY054122|ZNRF2|223082|zinc and ring finger 2	0.0	0.0	
chr1	247573384	247573497	reg1013263.p1	3.993	+	TSC_hg19_v1_chr1_-_247494994 BC007263 NM_032752	-78423	-	BC126341 BC126367 NM_173858	-154117	+	BC032514 BC096349 BC096350 BC096351 BC099661 BC013605 AK054647 NM_001243740 NM_003431	-238156	-	AK314998 NM_001079821 NM_001127461 TSC_hg19_v1_chr1_+_247579474 AB208891	6029	+	AF410477 AF427617 NM_001127462 NM_001243133 NM_004895 NM_183395	7910	+	NM_001004492 BC137181 BC137205	41855	-	BC007263|ZNF496|84838|zinc finger protein 496##NM_032752|ZNF496|84838|zinc finger protein 496##BC126341|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC126367|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##NM_173858|VN1R5|317705|vomeronasal 1 receptor 5 (gene/pseudogene)##BC032514|ZNF124|7678|zinc finger protein 124##BC096349|ZNF124|7678|zinc finger protein 124##BC096350|ZNF124|7678|zinc finger protein 124##BC096351|ZNF124|7678|zinc finger protein 124##BC099661|ZNF124|7678|zinc finger protein 124##BC013605|ZNF124|7678|zinc finger protein 124##AK054647|ZNF124|7678|zinc finger protein 124##NM_001243740|ZNF124|7678|zinc finger protein 124##NM_003431|ZNF124|7678|zinc finger protein 124##AK314998|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001079821|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127461|NLRP3|114548|NLR family, pyrin domain containing 3##AB208891|NLRP3|114548|NLR family, pyrin domain containing 3##AF410477|NLRP3|114548|NLR family, pyrin domain containing 3##AF427617|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001127462|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001243133|NLRP3|114548|NLR family, pyrin domain containing 3##NM_004895|NLRP3|114548|NLR family, pyrin domain containing 3##NM_183395|NLRP3|114548|NLR family, pyrin domain containing 3##NM_001004492|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137181|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11##BC137205|OR2B11|127623|olfactory receptor, family 2, subfamily B, member 11	0.0	0.0	
chr12	65029285	65029439	reg1013020.p2	3.993	+	TSC_hg19_v1_chr12_+_65004274 AY217662 AY217663 BC100949 BC100950 BC100951 BC100952 NM_178169	-25101	+	NM_013254 TSC_hg19_v1_chr12_+_64845917 AK291039 BC034950 AF191838	-183469	+	BC020569 Y16414 TSC_hg19_v1_chr12_+_64803772 AF039022	-225584	+	CU680338 Z12173 TSC_hg19_v1_chr12_-_65153140	123735	-	TSC_hg19_v1_chr12_-_65153163 AK308454 AK291771	123797	-	AK223484 AK302443 TSC_hg19_v1_chr12_-_65153187 AK296759 AK300350 AK304158 AK308094 BC012482	123822	-	AY217662|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##AY217663|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100949|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100950|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100951|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##BC100952|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_178169|RASSF3|283349|Ras association (RalGDS/AF-6) domain family member 3##NM_013254|TBK1|29110|TANK-binding kinase 1##AK291039|TBK1|29110|TANK-binding kinase 1##BC034950|TBK1|29110|TANK-binding kinase 1##AF191838|TBK1|29110|TANK-binding kinase 1##BC020569|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Y16414|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AF039022|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##Z12173|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308454|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK291771|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK223484|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK302443|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK296759|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK300350|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK304158|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##AK308094|GNS|2799|glucosamine (N-acetyl)-6-sulfatase##BC012482|GNS|2799|glucosamine (N-acetyl)-6-sulfatase	0.0	0.0	
chr2	123495456	123495610	reg1012078.p2	3.993	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-982296	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-1001068	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-1087888	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1287331	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	3918174	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	3918259	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.0	0.0	
chr2	171148132	171148258	reg1011235.p1	3.993	+	AF369908 AF391554 AF391555 AF391556 AF391557 AF391558 NM_001083615 NM_001171642 NM_138995 BC136620 BC144307	-113510	+	TSC_hg19_v1_chr2_+_170683963 NM_172070	-464237	+	BC000921 NM_014168 TSC_hg19_v1_chr2_-_170681416 AF201938 AF161482 AK001321 BC093014	-466810	-	TSC_hg19_v1_chr2_+_171571846 NM_001003845 AB096175	423663	+	TSC_hg19_v1_chr2_+_171571942 AB464708	423782	+	TSC_hg19_v1_chr2_+_171572707 BC069026	424515	+	AF369908|MYO3B|140469|myosin IIIB##AF391554|MYO3B|140469|myosin IIIB##AF391555|MYO3B|140469|myosin IIIB##AF391556|MYO3B|140469|myosin IIIB##AF391557|MYO3B|140469|myosin IIIB##AF391558|MYO3B|140469|myosin IIIB##NM_001083615|MYO3B|140469|myosin IIIB##NM_001171642|MYO3B|140469|myosin IIIB##NM_138995|MYO3B|140469|myosin IIIB##BC136620|MYO3B|140469|myosin IIIB##BC144307|MYO3B|140469|myosin IIIB##NM_172070|UBR3|130507|ubiquitin protein ligase E3 component n-recognin 3 (putative)##BC000921|METTL5|29081|methyltransferase like 5##NM_014168|METTL5|29081|methyltransferase like 5##AF201938|METTL5|29081|methyltransferase like 5##AF161482|METTL5|29081|methyltransferase like 5##AK001321|METTL5|29081|methyltransferase like 5##BC093014|METTL5|29081|methyltransferase like 5##NM_001003845|SP5|389058|Sp5 transcription factor##AB096175|SP5|389058|Sp5 transcription factor##BC069026|SP5|389058|Sp5 transcription factor	0.919298	0.0	denovo_WM_7:37:0.700
chr3	97907508	97907630	reg1017689.p1	3.993	+	NM_001005515	-20026	+	BC136984 NM_001005514	-39370	+	AB528772 NM_001005338	-56029	+	BC137523 BC137524 NM_001005479	75538	+	NM_001005482	94162	+	NM_001005517	165128	+	NM_001005515|OR5H15|403274|olfactory receptor, family 5, subfamily H, member 15##BC136984|OR5H14|403273|olfactory receptor, family 5, subfamily H, member 14##NM_001005514|OR5H14|403273|olfactory receptor, family 5, subfamily H, member 14##NM_001005338|OR5H1|26341|olfactory receptor, family 5, subfamily H, member 1##BC137523|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##BC137524|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##NM_001005479|OR5H6|79295|olfactory receptor, family 5, subfamily H, member 6##NM_001005482|OR5H2|79310|olfactory receptor, family 5, subfamily H, member 2##NM_001005517|OR5K4|403278|olfactory receptor, family 5, subfamily K, member 4	0.0	0.0	
chr5	127418345	127418468	reg1000614.p2	3.993	+	NM_001127385 AB219832 BC071790	-429681	+	NM_001048252 AB219764	-433683	+	AK090486 EU831910 EU832004 CU677817 TSC_hg19_v1_chr5_+_126859232	-559212	+	TSC_hg19_v1_chr5_-_127418765 AF088062 BX648677 BC036629	357	-	AK090949 AX746698 TSC_hg19_v1_chr5_-_127419417	953	-	TSC_hg19_v1_chr5_+_127419457 AY280459 NM_001046 U30246 BC033003 BC144221 BC146839	1067	+	NM_001127385|CTXN3|613212|cortexin 3##AB219832|CTXN3|613212|cortexin 3##BC071790|CTXN3|613212|cortexin 3##NM_001048252|CTXN3|613212|cortexin 3##AB219764|CTXN3|613212|cortexin 3##AK090486|PRRC1|133619|proline-rich coiled-coil 1##EU831910|PRRC1|133619|proline-rich coiled-coil 1##EU832004|PRRC1|133619|proline-rich coiled-coil 1##AF088062|FLJ33630|644873|uncharacterized LOC644873##BX648677|FLJ33630|644873|uncharacterized LOC644873##BC036629|FLJ33630|644873|uncharacterized LOC644873##AK090949|FLJ33630|644873|uncharacterized LOC644873##AY280459|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##NM_001046|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##U30246|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC033003|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC144221|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2##BC146839|SLC12A2|6558|solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.0	0.0	
chr9	6739362	6739492	reg1011727.p1	3.993	+	AK310439 NM_001146696	-18565	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-93800	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-326022	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	18240	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	18612	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1060288	-	AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123	0.0	0.04756	
chr11	65910069	65910175	reg1015066.p1	3.992	+	TSC_hg19_v1_chr11_+_65837841 AK096644 NM_018026 AK098336 AY320283 BC010096 BC052577	-72212	+	TSC_hg19_v1_chr11_+_65819834 NM_006842 AK290850 BC010372 BC053577 BX537771 AB463285 BC000401 U41371	-90282	+	AB053232 NM_033036	-93472	-	TSC_hg19_v1_chr11_+_65984213 AB033001	74100	+	TSC_hg19_v1_chr11_+_65988172 BC055288	78073	+	AK293966 TSC_hg19_v1_chr11_+_65998046 BC042909	87853	+	AK096644|PACS1|55690|phosphofurin acidic cluster sorting protein 1##NM_018026|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AK098336|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AY320283|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC010096|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC052577|PACS1|55690|phosphofurin acidic cluster sorting protein 1##NM_006842|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AK290850|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC053577|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BX537771|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC000401|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##U41371|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AB053232|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##NM_033036|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##AB033001|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC055288|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AK293966|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC042909|PACS1|55690|phosphofurin acidic cluster sorting protein 1	0.993197	0.0	
chr22	20978454	20978596	reg1014186.p1	3.992	+	TSC_hg19_v1_chr22_+_20918811 U80745	-59701	+	BC017110 TSC_hg19_v1_chr22_+_20909388	-69218	+	AB463109 CU013137 CU013425 AF328769 TSC_hg19_v1_chr22_+_20861965	-116561	+	L36151 NM_002650	110429	-	TSC_hg19_v1_chr22_+_21128411 NM_000185 AK314200 AK225292 BC035028	149871	+	AB384703 TSC_hg19_v1_chr22_-_21213029 AK302424	234505	-	U80745|MED15|51586|mediator complex subunit 15##BC017110|MED15|51586|mediator complex subunit 15##CU013137|MED15|51586|mediator complex subunit 15##CU013425|MED15|51586|mediator complex subunit 15##AF328769|MED15|51586|mediator complex subunit 15##L36151|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha##NM_002650|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha##NM_000185|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK314200|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK225292|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##BC035028|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK302424|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha	0.0	0.0	
chr6	83773264	83773444	reg1006579.p2	3.992	+	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	-699377	+	TSC_hg19_v1_chr6_+_83073565 BC037161 AK074786	-699821	+	AK291170 NM_006670	-700432	+	TSC_hg19_v1_chr6_-_83775541 BC101512 BC101538 BC143617 BC036049 AB126062 NM_198920 BC053645 AK298205 BC057845	2171	-	TSC_hg19_v1_chr6_+_83777389 BX648667 NM_001199942 NM_015018 AK094766	4043	+	AF102265 AB032081 AF180371 TSC_hg19_v1_chr6_-_83902977 AK314512 AK225363 AK001365 AK023432 BC001258 NM_001199918 NM_001199919 NM_015599	129618	-	AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein##BC037161|TPBG|7162|trophoblast glycoprotein##AK074786|TPBG|7162|trophoblast glycoprotein##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein##BC101512|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC101538|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC143617|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC036049|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AB126062|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##NM_198920|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC053645|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK298205|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC057845|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BX648667|DOPEY1|23033|dopey family member 1##NM_001199942|DOPEY1|23033|dopey family member 1##NM_015018|DOPEY1|23033|dopey family member 1##AK094766|DOPEY1|23033|dopey family member 1##AF102265|PGM3|5238|phosphoglucomutase 3##AB032081|PGM3|5238|phosphoglucomutase 3##AF180371|PGM3|5238|phosphoglucomutase 3##AK314512|PGM3|5238|phosphoglucomutase 3##AK225363|PGM3|5238|phosphoglucomutase 3##AK001365|PGM3|5238|phosphoglucomutase 3##AK023432|PGM3|5238|phosphoglucomutase 3##BC001258|PGM3|5238|phosphoglucomutase 3##NM_001199918|PGM3|5238|phosphoglucomutase 3##NM_001199919|PGM3|5238|phosphoglucomutase 3##NM_015599|PGM3|5238|phosphoglucomutase 3	0.0	0.0	
chr7	64644816	64644936	reg1017223.p1	3.992	+	TSC_hg19_v1_chr7_+_64601445 AK057766	-43356	+	TSC_hg19_v1_chr7_+_64498727 BX649060 BC071617	-146170	+	TSC_hg19_v1_chr7_-_64467066 AK295189 AK097499 NM_001007253	-177812	-	TSC_hg19_v1_chr7_+_64838761 BX647875 NM_007139 NM_152626 BC040594	193874	+	TSC_hg19_v1_chr7_+_64838793 AK091618 AX747097 BC036439 M61872	193931	+	TSC_hg19_v1_chr7_-_65215912 BX647963	571042	-	AK057766|INTS4L1|285905|integrator complex subunit 4-like 1##BX649060|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##BC071617|CCT6P3|643180|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3##AK295189|ERV3-1|2086|endogenous retrovirus group 3, member 1##NM_001007253|ERV3-1|2086|endogenous retrovirus group 3, member 1##BX647875|ZNF92|168374|zinc finger protein 92##NM_007139|ZNF92|168374|zinc finger protein 92##NM_152626|ZNF92|168374|zinc finger protein 92##BC040594|ZNF92|168374|zinc finger protein 92##AK091618|ZNF92|168374|zinc finger protein 92##BC036439|ZNF92|168374|zinc finger protein 92##M61872|ZNF92|168374|zinc finger protein 92	1.005925	0.0	
chr8	11754878	11754952	reg1012747.p1	3.992	+	TSC_hg19_v1_chr8_-_11725628 NM_001908 NM_147780 NM_147781 NM_147782 NM_147783	-29217	-	TSC_hg19_v1_chr8_-_11725624 AK075393	-29291	-	AK092070 AK130184 AK290239 AK297687 BC095408 TSC_hg19_v1_chr8_-_11725597 AK296845 BX647952	-29318	-	AY621333 DQ012026 NM_001033018	77192	-	AY621332 DQ012025 NM_001033017	84914	+	AY621331 DQ012024 NM_001033019 BC130461 BC130463	98874	-	NM_001908|CTSB|1508|cathepsin B##NM_147780|CTSB|1508|cathepsin B##NM_147781|CTSB|1508|cathepsin B##NM_147782|CTSB|1508|cathepsin B##NM_147783|CTSB|1508|cathepsin B##AK075393|CTSB|1508|cathepsin B##AK092070|CTSB|1508|cathepsin B##AK130184|CTSB|1508|cathepsin B##AK290239|CTSB|1508|cathepsin B##AK297687|CTSB|1508|cathepsin B##BC095408|CTSB|1508|cathepsin B##AK296845|CTSB|1508|cathepsin B##BX647952|CTSB|1508|cathepsin B##AY621333|DEFB136|613210|defensin, beta 136##DQ012026|DEFB136|613210|defensin, beta 136##NM_001033018|DEFB136|613210|defensin, beta 136##AY621332|DEFB135|613209|defensin, beta 135##DQ012025|DEFB135|613209|defensin, beta 135##NM_001033017|DEFB135|613209|defensin, beta 135##AY621331|DEFB134|613211|defensin, beta 134##DQ012024|DEFB134|613211|defensin, beta 134##NM_001033019|DEFB134|613211|defensin, beta 134##BC130461|DEFB134|613211|defensin, beta 134##BC130463|DEFB134|613211|defensin, beta 134	0.0	0.0	
chr14	74240720	74240847	reg1013109.p1	3.991	+	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-13818	-	BC015668 TSC_hg19_v1_chr14_-_74226640	-14145	-	CR457112 BC039577 AK290980 TSC_hg19_v1_chr14_-_74181085 AF320308 BC007712 NM_006029	-60022	-	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	13136	-	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	77806	+	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	112535	+	AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##BC015668|C14orf43|91748|chromosome 14 open reading frame 43##CR457112|PNMA1|9240|paraneoplastic antigen MA1##BC039577|PNMA1|9240|paraneoplastic antigen MA1##AK290980|PNMA1|9240|paraneoplastic antigen MA1##AF320308|PNMA1|9240|paraneoplastic antigen MA1##BC007712|PNMA1|9240|paraneoplastic antigen MA1##NM_006029|PNMA1|9240|paraneoplastic antigen MA1##NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410	1.344376	0.0	denovo_WM_7:-36:0.359	denovo_WM_7:-51:0.552
chr16	11837409	11837475	reg1008793.p2	3.991	+	TSC_hg19_v1_chr16_-_11836686 AK297094 BX648407 AK027646 NM_015914 BC002856 BC018635	-786	-	TSC_hg19_v1_chr16_+_11762310 NM_003498 BC036100 BC036443 AL161976 AF030196	-75144	+	BC039840 TSC_hg19_v1_chr16_-_11680776 BC016491 BC008309 BC065293 BC107713 BC000053 AK095955 AK130788 AK314519 NM_001136472 NM_001136473	-156653	-	BC046363 BC036857 TSC_hg19_v1_chr16_-_11891096 AK091803 AX747194	53609	-	TSC_hg19_v1_chr16_-_11891103 NM_014153	53673	-	AY598331 HQ258262 HQ258426 AJ007398 BC019069 TSC_hg19_v1_chr16_-_11945392 AK000822 BC009802 BC017899 BC107782 BC070325 AY154473 BC112228 BC113699 BC016362 AL049999 AK295935 NM_015659	107962	-	AK297094|TXNDC11|51061|thioredoxin domain containing 11##BX648407|TXNDC11|51061|thioredoxin domain containing 11##AK027646|TXNDC11|51061|thioredoxin domain containing 11##NM_015914|TXNDC11|51061|thioredoxin domain containing 11##BC002856|TXNDC11|51061|thioredoxin domain containing 11##BC018635|TXNDC11|51061|thioredoxin domain containing 11##NM_003498|SNN|8303|stannin##BC036100|SNN|8303|stannin##BC036443|SNN|8303|stannin##AL161976|SNN|8303|stannin##AF030196|SNN|8303|stannin##BC039840|LITAF|9516|lipopolysaccharide-induced TNF factor##BC016491|LITAF|9516|lipopolysaccharide-induced TNF factor##BC008309|LITAF|9516|lipopolysaccharide-induced TNF factor##BC065293|LITAF|9516|lipopolysaccharide-induced TNF factor##BC000053|LITAF|9516|lipopolysaccharide-induced TNF factor##AK095955|LITAF|9516|lipopolysaccharide-induced TNF factor##AK130788|LITAF|9516|lipopolysaccharide-induced TNF factor##AK314519|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136472|LITAF|9516|lipopolysaccharide-induced TNF factor##NM_001136473|LITAF|9516|lipopolysaccharide-induced TNF factor##BC046363|ZC3H7A|29066|zinc finger CCCH-type containing 7A##BC036857|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AK091803|ZC3H7A|29066|zinc finger CCCH-type containing 7A##NM_014153|ZC3H7A|29066|zinc finger CCCH-type containing 7A##AY598331|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258262|RSL1D1|26156|ribosomal L1 domain containing 1##HQ258426|RSL1D1|26156|ribosomal L1 domain containing 1##AJ007398|RSL1D1|26156|ribosomal L1 domain containing 1##BC019069|RSL1D1|26156|ribosomal L1 domain containing 1##AK000822|RSL1D1|26156|ribosomal L1 domain containing 1##BC009802|RSL1D1|26156|ribosomal L1 domain containing 1##BC017899|RSL1D1|26156|ribosomal L1 domain containing 1##BC107782|RSL1D1|26156|ribosomal L1 domain containing 1##BC070325|RSL1D1|26156|ribosomal L1 domain containing 1##AY154473|RSL1D1|26156|ribosomal L1 domain containing 1##BC112228|RSL1D1|26156|ribosomal L1 domain containing 1##BC113699|RSL1D1|26156|ribosomal L1 domain containing 1##BC016362|RSL1D1|26156|ribosomal L1 domain containing 1##AL049999|RSL1D1|26156|ribosomal L1 domain containing 1##AK295935|RSL1D1|26156|ribosomal L1 domain containing 1##NM_015659|RSL1D1|26156|ribosomal L1 domain containing 1	0.988129	0.0	denovo_WM_7:-16:0.881
chr2	47953062	47953230	reg1015847.p2	3.991	+	TSC_hg19_v1_chr2_-_47918421 D28393	-34727	-	AF287302 NM_022055 BC047749	-155663	-	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	-322829	+	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	57150	+	AK304140 AK315108 NM_025133	162705	-	BC130445 BC136480 AK292877 AF176706 AF174599 AK223592 BC043258 AY827075 TSC_hg19_v1_chr2_-_48132864 AK297444 NM_001190274	179647	-	D28393|RPL18A|6142|ribosomal protein L18a##AF287302|KCNK12|56660|potassium channel, subfamily K, member 12##NM_022055|KCNK12|56660|potassium channel, subfamily K, member 12##BC047749|KCNK12|56660|potassium channel, subfamily K, member 12##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)##AK304140|FBXO11|80204|F-box protein 11##AK315108|FBXO11|80204|F-box protein 11##NM_025133|FBXO11|80204|F-box protein 11##BC130445|FBXO11|80204|F-box protein 11##BC136480|FBXO11|80204|F-box protein 11##AK292877|FBXO11|80204|F-box protein 11##AF176706|FBXO11|80204|F-box protein 11##AF174599|FBXO11|80204|F-box protein 11##AK223592|FBXO11|80204|F-box protein 11##BC043258|FBXO11|80204|F-box protein 11##AY827075|FBXO11|80204|F-box protein 11##AK297444|FBXO11|80204|F-box protein 11##NM_001190274|FBXO11|80204|F-box protein 11	0.882231	0.0	denovo_WM_7:4:0.811
chr2	85958804	85958984	reg1005957.p1	3.991	+	NM_006433 NM_012483 X54101 AK310057 AK311537 AK311012 AK311657 BC063245 AK304728 TSC_hg19_v1_chr2_+_85921514 DQ892267 DQ895468 BC023576 CR541859 X05044	-37414	+	NM_000542 NM_198843	-63031	-	TSC_hg19_v1_chr2_-_85888519 AB439563 AB439564 AB439565 AB439566	-70319	-	TSC_hg19_v1_chr2_+_85981113 NM_032827 AK074681 BC021207 AK027614 BC094832 AB463420 AF529205	22111	+	AY152815 NM_001042437	135898	-	AY359105 TSC_hg19_v1_chr2_-_86116102 AK295252 AK315955 AF119415 AF344831 BC065936 AK001340 AB018356 NM_003896	157192	-	NM_006433|GNLY|10578|granulysin##NM_012483|GNLY|10578|granulysin##X54101|GNLY|10578|granulysin##AK310057|GNLY|10578|granulysin##AK311537|GNLY|10578|granulysin##AK311012|GNLY|10578|granulysin##AK311657|GNLY|10578|granulysin##BC063245|GNLY|10578|granulysin##AK304728|GNLY|10578|granulysin##DQ892267|GNLY|10578|granulysin##DQ895468|GNLY|10578|granulysin##BC023576|GNLY|10578|granulysin##CR541859|GNLY|10578|granulysin##X05044|GNLY|10578|granulysin##NM_000542|SFTPB|6439|surfactant protein B##NM_198843|SFTPB|6439|surfactant protein B##AB439563|SFTPB|6439|surfactant protein B##AB439565|SFTPB|6439|surfactant protein B##NM_032827|ATOH8|84913|atonal homolog 8 (Drosophila)##AK074681|ATOH8|84913|atonal homolog 8 (Drosophila)##BC021207|ATOH8|84913|atonal homolog 8 (Drosophila)##AK027614|ATOH8|84913|atonal homolog 8 (Drosophila)##BC094832|ATOH8|84913|atonal homolog 8 (Drosophila)##AF529205|ATOH8|84913|atonal homolog 8 (Drosophila)##AY152815|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_001042437|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AY359105|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF119415|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AF344831|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##BC065936|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AK001340|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##AB018356|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5##NM_003896|ST3GAL5|8869|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	0.0	0.0	
chr5	10355313	10355493	reg1016964.p2	3.991	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-1395	+	TSC_hg19_v1_chr5_+_10353836 AK000970 BC136461 BC136462 BC142679 BC142694	-1539	+	TSC_hg19_v1_chr5_+_10353827 AK300034 BC111494 AB011169 AK296585 AK299339 NM_005885	-1589	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	86600	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	86749	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	209039	+	AK000970|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136461|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC136462|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142679|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC142694|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK300034|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##BC111494|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AB011169|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK296585|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##AK299339|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_005885|MARCH6|10299|membrane-associated ring finger (C3HC4) 6##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B	0.0	0.0	
chr12	64248884	64248956	reg1010481.p1	3.990	+	TSC_hg19_v1_chr12_+_64238511 BC053903 NM_020762 BC029919	-10374	+	TSC_hg19_v1_chr12_+_64237847 BC065032	-11194	+	BX647105 BX647419 TSC_hg19_v1_chr12_+_64173925	-74985	+	BC071634 AK057111 BC036246 AK129933 NM_152440	367133	-	BC039369 NM_001099676 NM_001170633	535397	-	TSC_hg19_v1_chr12_+_64798240 NM_007235 AK308108 AK292884	549326	+	BC053903|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##NM_020762|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BC029919|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BX647105|TMEM5|10329|transmembrane protein 5##BX647419|TMEM5|10329|transmembrane protein 5##BC071634|C12orf66|144577|chromosome 12 open reading frame 66##AK057111|C12orf66|144577|chromosome 12 open reading frame 66##BC036246|C12orf66|144577|chromosome 12 open reading frame 66##AK129933|C12orf66|144577|chromosome 12 open reading frame 66##NM_152440|C12orf66|144577|chromosome 12 open reading frame 66##BC039369|C12orf56|115749|chromosome 12 open reading frame 56##NM_001099676|C12orf56|115749|chromosome 12 open reading frame 56##NM_001170633|C12orf56|115749|chromosome 12 open reading frame 56##NM_007235|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AK308108|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)##AK292884|XPOT|11260|exportin, tRNA (nuclear export receptor for tRNAs)	0.015614	0.292249	CTCF.p2:12:0.292
chr12	72019856	72019985	reg1012558.p1	3.990	+	TSC_hg19_v1_chr12_+_71833761 AK075399 AF062006 FN820440 NM_003667 BC096324 BC096325 BC096326 BC099650 AF061444	-186110	+	TSC_hg19_v1_chr12_+_71833577 AK294985 AK315133	-186370	+	BC005246 NM_004616	-468142	-	AB385347 CU677389 TSC_hg19_v1_chr12_-_72057432	37490	-	TSC_hg19_v1_chr12_-_72057617 AB011118 BC073843 BC064336 BX647709 BC015679	37678	-	TSC_hg19_v1_chr12_-_72057679 NM_144982	37792	-	AK075399|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AF062006|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##FN820440|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##NM_003667|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC096324|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC096325|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC096326|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC099650|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AF061444|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AK294985|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AK315133|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC005246|TSPAN8|7103|tetraspanin 8##NM_004616|TSPAN8|7103|tetraspanin 8##AB011118|ZFC3H1|196441|zinc finger, C3H1-type containing##BC073843|ZFC3H1|196441|zinc finger, C3H1-type containing##BC064336|ZFC3H1|196441|zinc finger, C3H1-type containing##BX647709|ZFC3H1|196441|zinc finger, C3H1-type containing##BC015679|ZFC3H1|196441|zinc finger, C3H1-type containing##NM_144982|ZFC3H1|196441|zinc finger, C3H1-type containing	0.0	0.0	
chr14	102291434	102291614	reg1011632.p1	3.990	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-15215	+	TSC_hg19_v1_chr14_+_102276171 NM_002719 NM_178586 NM_178587 AK295449 AK315072 Z69030 U37352 BC016183	-15341	+	NM_001161725 NM_001161726 TSC_hg19_v1_chr14_+_102228166 AL834350 BC051442 AK131391 AK302470	-63338	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	139304	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	139437	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	261840	-	AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_002719|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178586|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_178587|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK315072|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##Z69030|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##U37352|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC016183|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161725|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##NM_001161726|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AL834350|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##BC051442|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK131391|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AK302470|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.0	0.0	
chr2	37876567	37876723	reg1012537.p2	3.990	+	NM_012413 AK290605 BC015460 BC047756 BC020456 X71125 BC036721 CU690490	-304832	+	BC030706 BC012820 AB015982 NM_005813	-332452	-	TSC_hg19_v1_chr2_+_37458826 BX538031 AK302150 AK294240	-417799	+	AK128735 BC019270 AK313483 TSC_hg19_v1_chr2_-_37898786	22134	-	TSC_hg19_v1_chr2_-_37899342 AL136842 NM_006449	22744	-	TSC_hg19_v1_chr2_+_38152420 AY358269 NM_001170791 AK095462	275787	+	NM_012413|QPCT|25797|glutaminyl-peptide cyclotransferase##AK290605|QPCT|25797|glutaminyl-peptide cyclotransferase##BC015460|QPCT|25797|glutaminyl-peptide cyclotransferase##BC047756|QPCT|25797|glutaminyl-peptide cyclotransferase##BC020456|QPCT|25797|glutaminyl-peptide cyclotransferase##X71125|QPCT|25797|glutaminyl-peptide cyclotransferase##BC036721|QPCT|25797|glutaminyl-peptide cyclotransferase##BC030706|PRKD3|23683|protein kinase D3##BC012820|PRKD3|23683|protein kinase D3##AB015982|PRKD3|23683|protein kinase D3##NM_005813|PRKD3|23683|protein kinase D3##BX538031|C2orf56|55471|chromosome 2 open reading frame 56##AK302150|C2orf56|55471|chromosome 2 open reading frame 56##AK294240|C2orf56|55471|chromosome 2 open reading frame 56##AK128735|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##BC019270|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AK313483|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AL136842|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##NM_006449|CDC42EP3|10602|CDC42 effector protein (Rho GTPase binding) 3##AY358269|FAM82A1|151393|family with sequence similarity 82, member A1##NM_001170791|FAM82A1|151393|family with sequence similarity 82, member A1##AK095462|FAM82A1|151393|family with sequence similarity 82, member A1	1.99308	0.0	denovo_WM_7:-26:0.221	denovo_WM_7:-48:0.221
chr2	97158016	97158116	reg1009251.p2	3.990	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-156530	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-156590	+	NM_178495 NM_001163524 BC034503	-166118	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	44419	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	145953	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	146001	-	BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_178495|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_001163524|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##BC034503|ITPRIPL1|150771|inositol 1,4,5-trisphosphate receptor interacting protein-like 1##NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	0.986806	0.0	denovo_WM_7:-30:0.259	denovo_WM_7:-32:0.639
chr3	42089389	42089488	reg1005253.p1	3.990	+	BC014794 TSC_hg19_v1_chr3_-_42003564 AK304341 AK000581 NM_017886	-85879	-	AK296790 AK314776 X87838 TSC_hg19_v1_chr3_+_41240995 BC058926 Z19054 AK299954	-848414	+	TSC_hg19_v1_chr3_+_41240969 NM_001098209 NM_001098210 NM_001904 AK294778	-848489	+	AK295480 AB028965 NM_001042646 AK295848 AK316260 AB385421	43395	+	TSC_hg19_v1_chr3_+_42190749 AK294221	101310	+	AL713787 TSC_hg19_v1_chr3_+_42190865	101409	+	BC014794|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK304341|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK000581|ULK4|54986|unc-51-like kinase 4 (C. elegans)##NM_017886|ULK4|54986|unc-51-like kinase 4 (C. elegans)##AK296790|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK314776|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##X87838|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##BC058926|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##Z19054|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK299954|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098209|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001098210|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##NM_001904|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK294778|CTNNB1|1499|catenin (cadherin-associated protein), beta 1, 88kDa##AK295480|TRAK1|22906|trafficking protein, kinesin binding 1##AB028965|TRAK1|22906|trafficking protein, kinesin binding 1##NM_001042646|TRAK1|22906|trafficking protein, kinesin binding 1##AK295848|TRAK1|22906|trafficking protein, kinesin binding 1##AK316260|TRAK1|22906|trafficking protein, kinesin binding 1##AK294221|TRAK1|22906|trafficking protein, kinesin binding 1##AL713787|TRAK1|22906|trafficking protein, kinesin binding 1	0.997822	0.0	denovo_WM_7:-14:0.305	denovo_WM_7:-15:0.305	denovo_WM_7:-16:0.305
chr4	40520406	40520472	reg1008390.p2	3.990	+	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-2481	-	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	-3855	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-182994	+	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	111426	-	AK304206 TSC_hg19_v1_chr4_-_40632775	112268	-	BC042401 NM_024677 BC036568 AK024063	231507	+	AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK304206|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7	0.027477	0.0	
chr5	124256891	124257014	reg1012011.p1	3.990	+	BC131507 AB033107 BC151226 NM_020747	-176164	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1409070	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1497808	-	NM_001146319 AK316288 AK300154	1438862	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1501891	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1502235	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr6	107293134	107293281	reg1013326.p2	3.990	+	NM_018292 TSC_hg19_v1_chr6_+_107077455 AK225262 AL136679 AK225443 AK314694 BC014389 AK001851 BC006084 AK022251 AK023509 CU675233	-215710	+	BC006399 AK313962 TSC_hg19_v1_chr6_-_107077358 NM_032730	-215927	-	TSC_hg19_v1_chr6_+_106960443 U83115	-332796	+	TSC_hg19_v1_chr6_+_107349444 NM_001142468 NM_001142470 NM_016487 AF151064 AK091564	56265	+	BC131628 NM_001080450	142428	-	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	487523	-	NM_018292|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225262|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AL136679|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK225443|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK314694|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC014389|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK001851|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006084|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK022251|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##AK023509|QRSL1|55278|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1##BC006399|RTN4IP1|84816|reticulon 4 interacting protein 1##AK313962|RTN4IP1|84816|reticulon 4 interacting protein 1##NM_032730|RTN4IP1|84816|reticulon 4 interacting protein 1##U83115|AIM1|202|absent in melanoma 1##NM_001142468|C6orf203|51250|chromosome 6 open reading frame 203##NM_001142470|C6orf203|51250|chromosome 6 open reading frame 203##NM_016487|C6orf203|51250|chromosome 6 open reading frame 203##AF151064|C6orf203|51250|chromosome 6 open reading frame 203##AK091564|C6orf203|51250|chromosome 6 open reading frame 203##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2	0.716282	0.0	denovo_WM_7:103:0.249	denovo_WM_7:104:0.351
chr7	5270014	5270138	reg1003454.p2	3.990	+	BC016912 AF151808 NM_001033520 AY691426	-16184	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-40091	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-40161	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	52530	+	TSC_hg19_v1_chr7_-_5460842 BC140723	190830	-	AY129022 TSC_hg19_v1_chr7_-_5461555	191465	-	BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AY129022|TNRC18|84629|trinucleotide repeat containing 18	0.0	0.0	
chrX	146930216	146930338	reg1014299.p1	3.990	+	NM_001144064 NM_001244892	-1034029	-	NM_001144064 NM_001244892	-1038976	+	NM_004709 Y08902 BC113600 BC113604 HQ258719	-2021216	+	TSC_hg19_v1_chrX_+_146993468 BC086957 NM_001185075 NM_001185076 NM_001185081 NM_001185082 NM_002024 S65791 X69962 M67468	63216	+	BC038998 TSC_hg19_v1_chrX_+_146993559	63274	+	TSC_hg19_v1_chrX_+_146993685 CU691632	63416	+	NM_001144064|CXorf51A|100129239|chromosome X open reading frame 51A##NM_001244892|CXorf51B|100133053|chromosome X open reading frame 51B##NM_001144064|CXorf51A|100129239|chromosome X open reading frame 51A##NM_001244892|CXorf51B|100133053|chromosome X open reading frame 51B##NM_004709|CXorf1|9142|chromosome X open reading frame 1##Y08902|CXorf1|9142|chromosome X open reading frame 1##BC113600|CXorf1|9142|chromosome X open reading frame 1##BC113604|CXorf1|9142|chromosome X open reading frame 1##HQ258719|CXorf1|9142|chromosome X open reading frame 1##BC086957|FMR1|2332|fragile X mental retardation 1##NM_001185075|FMR1|2332|fragile X mental retardation 1##NM_001185076|FMR1|2332|fragile X mental retardation 1##NM_001185081|FMR1|2332|fragile X mental retardation 1##NM_001185082|FMR1|2332|fragile X mental retardation 1##NM_002024|FMR1|2332|fragile X mental retardation 1##S65791|FMR1|2332|fragile X mental retardation 1##X69962|FMR1|2332|fragile X mental retardation 1##M67468|FMR1|2332|fragile X mental retardation 1##BC038998|FMR1|2332|fragile X mental retardation 1	0.988385	0.0	denovo_WM_7:-22:0.945
chr10	133786358	133786477	reg1017626.p2	3.989	+	BC042951 NM_174937 TSC_hg19_v1_chr10_-_133110013	-676416	-	TSC_hg19_v1_chr10_-_133109808 BC093639 BC101535	-676597	-	TSC_hg19_v1_chr10_+_131934681 AJ010841 AB463691	-1851702	+	CU692440 AB528671 U15174 BC009342 BC080643 TSC_hg19_v1_chr10_-_133795428 AK222626 AK295136 BC021989 AF002697 NM_004052	8959	-	TSC_hg19_v1_chr10_-_133795461 BC067818	9052	-	NM_001105521	131895	+	BC042951|TCERG1L|256536|transcription elongation regulator 1-like##NM_174937|TCERG1L|256536|transcription elongation regulator 1-like##BC093639|TCERG1L|256536|transcription elongation regulator 1-like##BC101535|TCERG1L|256536|transcription elongation regulator 1-like##AJ010841|GLRX3|10539|glutaredoxin 3##U15174|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##BC009342|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##BC080643|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##AK222626|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##AK295136|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##BC021989|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##AF002697|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##NM_004052|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##BC067818|BNIP3|664|BCL2/adenovirus E1B 19kDa interacting protein 3##NM_001105521|JAKMIP3|282973|Janus kinase and microtubule interacting protein 3	1.016021	0.0	denovo_WM_7:-7:0.491	denovo_WM_7:-8:0.428
chr11	111919296	111919364	reg1004269.p1	3.989	+	TSC_hg19_v1_chr11_+_111896166 AK296274 AK303930 AK297103 AF317200 AK223596 AL832703 BC039084 DQ892447 DQ895658 CU691660 Y00978 AK299562	-23122	+	AK057299 NM_001931	-23793	+	TSC_hg19_v1_chr11_+_111848069 NM_033425 AK289807 BC033034 AB051522	-71264	+	AK300496 NM_001082619 NM_138789	25495	-	NM_001082969 NM_001082970 NM_018195 BX538107 AK125340 AK094203 BC048133 BC072455 AB096251	25685	+	TSC_hg19_v1_chr11_-_111957481 AF165967 AF152350 AF150087 BC000711 AK312169 AK025397 BC105986 BC106067 NM_012459	38141	-	AK296274|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK303930|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK297103|DLAT|1737|dihydrolipoamide S-acetyltransferase##AF317200|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK223596|DLAT|1737|dihydrolipoamide S-acetyltransferase##AL832703|DLAT|1737|dihydrolipoamide S-acetyltransferase##BC039084|DLAT|1737|dihydrolipoamide S-acetyltransferase##DQ892447|DLAT|1737|dihydrolipoamide S-acetyltransferase##DQ895658|DLAT|1737|dihydrolipoamide S-acetyltransferase##Y00978|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK299562|DLAT|1737|dihydrolipoamide S-acetyltransferase##AK057299|DLAT|1737|dihydrolipoamide S-acetyltransferase##NM_001931|DLAT|1737|dihydrolipoamide S-acetyltransferase##NM_033425|DIXDC1|85458|DIX domain containing 1##AK289807|DIXDC1|85458|DIX domain containing 1##BC033034|DIXDC1|85458|DIX domain containing 1##AB051522|DIXDC1|85458|DIX domain containing 1##AK300496|PIH1D2|120379|PIH1 domain containing 2##NM_001082619|PIH1D2|120379|PIH1 domain containing 2##NM_138789|PIH1D2|120379|PIH1 domain containing 2##NM_001082969|C11orf57|55216|chromosome 11 open reading frame 57##NM_001082970|C11orf57|55216|chromosome 11 open reading frame 57##NM_018195|C11orf57|55216|chromosome 11 open reading frame 57##BX538107|C11orf57|55216|chromosome 11 open reading frame 57##AK125340|C11orf57|55216|chromosome 11 open reading frame 57##AK094203|C11orf57|55216|chromosome 11 open reading frame 57##BC048133|C11orf57|55216|chromosome 11 open reading frame 57##BC072455|C11orf57|55216|chromosome 11 open reading frame 57##AB096251|C11orf57|55216|chromosome 11 open reading frame 57##AF165967|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF152350|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AF150087|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC000711|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK312169|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##AK025397|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC105986|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##BC106067|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)##NM_012459|TIMM8B|26521|translocase of inner mitochondrial membrane 8 homolog B (yeast)	0.0	0.0	
chr1	235530507	235530627	reg1008684.p2	3.989	+	AK309831 TSC_hg19_v1_chr1_+_235492306	-38272	+	NM_001037277 TSC_hg19_v1_chr1_+_235491884 AF057698 AK025139 BC005252 AK293278 AB019036 AB016043 AF125394	-38706	+	TSC_hg19_v1_chr1_-_235491495 AF214114 AK057552 NM_016374 NM_031371	-39055	-	NM_001079515 NM_003193 TSC_hg19_v1_chr1_+_235530744 AK296185 AK298050	176	+	TSC_hg19_v1_chr1_+_235530768 AK093397 AK292287 BC008654	205	+	TSC_hg19_v1_chr1_-_235667473 AK091497	136942	-	NM_001037277|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF057698|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK025139|GGPS1|9453|geranylgeranyl diphosphate synthase 1##BC005252|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK293278|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB019036|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB016043|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF125394|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF214114|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##AK057552|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_016374|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_031371|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001079515|TBCE|6905|tubulin folding cofactor E##NM_003193|TBCE|6905|tubulin folding cofactor E##AK296185|TBCE|6905|tubulin folding cofactor E##AK298050|TBCE|6905|tubulin folding cofactor E##AK093397|TBCE|6905|tubulin folding cofactor E##AK292287|TBCE|6905|tubulin folding cofactor E##BC008654|TBCE|6905|tubulin folding cofactor E##AK091497|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2	0.0	0.0	
chr1	246059761	246059873	reg1005815.p2	3.989	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-741509	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-926134	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-926187	+	AK024733 NM_022743	520894	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	610737	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	610791	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.0	0.0	
chr15	23073894	23074056	reg1002882.p1	3.989	+	TSC_hg19_v1_chr15_-_23034411 AK096305 AK313584 NM_001008860 NM_001008892 NM_001008894 NM_001184888 NM_001184889 NM_030922	-39559	-	TSC_hg19_v1_chr15_-_23034365 AK300843	-39608	-	TSC_hg19_v1_chr15_-_23034343 BC011775 AY732242	-39641	-	AK057846 BC103705 AK314073 AB590048 TSC_hg19_v1_chr15_-_23086444 NM_144599	12399	-	BC025678 NM_001142275	12867	-	TSC_hg19_v1_chr15_-_23115247 BC044583	41273	-	AK096305|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK313584|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008860|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008892|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001008894|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184888|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_001184889|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##NM_030922|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK300843|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##BC011775|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AY732242|NIPA2|81614|non imprinted in Prader-Willi/Angelman syndrome 2##AK057846|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC103705|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##AK314073|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_144599|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC025678|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##NM_001142275|NIPA1|123606|non imprinted in Prader-Willi/Angelman syndrome 1##BC044583|LOC283683|283683|uncharacterized LOC283683	0.0	0.0	
chr19	3665386	3665494	reg1012788.p1	3.989	+	BC004149 TSC_hg19_v1_chr19_-_3632587	-32924	-	TSC_hg19_v1_chr19_-_3626795 AY917150 NM_001080543 NM_021231	-38639	-	TSC_hg19_v1_chr19_-_3626774 AK299963	-38659	-	FJ965536 FJ965537 TSC_hg19_v1_chr19_-_3700457 AB385354 AB011161	34982	-	AK301309 TSC_hg19_v1_chr19_-_3700461 AK315912	35020	-	TSC_hg19_v1_chr19_-_3700467 NM_001195733 NM_012398	35034	-	BC004149|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##AY917150|C19orf29|58509|chromosome 19 open reading frame 29##NM_001080543|C19orf29|58509|chromosome 19 open reading frame 29##NM_021231|C19orf29|58509|chromosome 19 open reading frame 29##AK299963|C19orf29|58509|chromosome 19 open reading frame 29##FJ965536|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##FJ965537|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##AB011161|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##AK301309|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##AK315912|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##NM_001195733|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma##NM_012398|PIP5K1C|23396|phosphatidylinositol-4-phosphate 5-kinase, type I, gamma	0.0	0.0	
chr22	50820369	50820486	reg1014540.p1	3.989	+	AB014585 TSC_hg19_v1_chr22_+_50781776 BC041698 AK302472	-38624	+	TSC_hg19_v1_chr22_+_50781755 NM_001242898 NM_001242899 NM_001242900 NM_014678 BC032664 BC006568 BC052995	-38684	+	AK054743 AK022407 BC031069 NM_001001794	-54981	-	BC046169 TSC_hg19_v1_chr22_-_50893787 BC056915	73339	-	EU831421 EU831514 BC111424 BC087612 TSC_hg19_v1_chr22_-_50913465 BC040031 AK057985 NM_002972	92961	-	TSC_hg19_v1_chr22_+_50919971 AK024788 AK225097 NM_024866 AB236970 NM_001253845 AK090635 AB463404 AB121034 AF529213	99696	+	AB014585|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC041698|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##AK302472|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242898|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242899|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242900|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_014678|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC032664|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC006568|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC052995|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##AK054743|FAM116B|414918|family with sequence similarity 116, member B##BC031069|FAM116B|414918|family with sequence similarity 116, member B##NM_001001794|FAM116B|414918|family with sequence similarity 116, member B##BC046169|SBF1|6305|SET binding factor 1##BC056915|SBF1|6305|SET binding factor 1##EU831421|SBF1|6305|SET binding factor 1##EU831514|SBF1|6305|SET binding factor 1##BC087612|SBF1|6305|SET binding factor 1##BC040031|SBF1|6305|SET binding factor 1##AK057985|SBF1|6305|SET binding factor 1##NM_002972|SBF1|6305|SET binding factor 1##AK024788|ADM2|79924|adrenomedullin 2##NM_024866|ADM2|79924|adrenomedullin 2##AB236970|ADM2|79924|adrenomedullin 2##NM_001253845|ADM2|79924|adrenomedullin 2##AK090635|ADM2|79924|adrenomedullin 2##AB121034|ADM2|79924|adrenomedullin 2##AF529213|ADM2|79924|adrenomedullin 2	0.953407	0.0	denovo_WM_7:-82:0.629
chr6	139184652	139184746	reg1016639.p1	3.989	+	NM_001077706 NM_001195037	-67452	+	AK092592 AX747618 NM_001242740	-89898	-	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	-89909	+	BC021211 TSC_hg19_v1_chr6_-_139309122 AB209143	124378	-	TSC_hg19_v1_chr6_-_139309357 BC035286 AK312938	124649	-	TSC_hg19_v1_chr6_-_139309391 BC012764 NM_001128617 NM_031922	124711	-	NM_001077706|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##NM_001195037|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##AK092592|LOC100507462|100507462|uncharacterized LOC100507462##NM_001242740|LOC100507462|100507462|uncharacterized LOC100507462##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A##BC021211|REPS1|85021|RALBP1 associated Eps domain containing 1##AB209143|REPS1|85021|RALBP1 associated Eps domain containing 1##BC035286|REPS1|85021|RALBP1 associated Eps domain containing 1##AK312938|REPS1|85021|RALBP1 associated Eps domain containing 1##BC012764|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_001128617|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_031922|REPS1|85021|RALBP1 associated Eps domain containing 1	0.979962	0.0	denovo_WM_7:59:0.703
chr9	34180821	34180947	reg1015123.p1	3.989	+	TSC_hg19_v1_chr9_+_34179058 AF222043 BC098141 BC098316 BC099726 BC100668	-1802	+	AK223235 AK309329 TSC_hg19_v1_chr9_+_34179047	-1837	+	TSC_hg19_v1_chr9_+_34179039 AK074995 BC020950 AK074745 AK295482	-1844	+	TSC_hg19_v1_chr9_-_34329214 NM_194313 AK310014	148327	-	NM_001161 NM_001244390 NM_147172 NM_147173 TSC_hg19_v1_chr9_+_34329566 AK310574 U30313	148654	+	TSC_hg19_v1_chr9_-_34376864 BC070098 NM_020702	196049	-	AF222043|UBAP1|51271|ubiquitin associated protein 1##BC098141|UBAP1|51271|ubiquitin associated protein 1##BC098316|UBAP1|51271|ubiquitin associated protein 1##BC099726|UBAP1|51271|ubiquitin associated protein 1##BC100668|UBAP1|51271|ubiquitin associated protein 1##AK223235|UBAP1|51271|ubiquitin associated protein 1##AK309329|UBAP1|51271|ubiquitin associated protein 1##AK074995|UBAP1|51271|ubiquitin associated protein 1##BC020950|UBAP1|51271|ubiquitin associated protein 1##AK074745|UBAP1|51271|ubiquitin associated protein 1##AK295482|UBAP1|51271|ubiquitin associated protein 1##NM_194313|KIF24|347240|kinesin family member 24##AK310014|KIF24|347240|kinesin family member 24##NM_001161|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_001244390|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_147172|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##NM_147173|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##U30313|NUDT2|318|nudix (nucleoside diphosphate linked moiety X)-type motif 2##BC070098|KIAA1161|57462|KIAA1161##NM_020702|KIAA1161|57462|KIAA1161	1.947541	0.0	denovo_WM_7:-64:0.753	denovo_WM_7:-83:0.938
chr15	34661177	34661271	reg1015206.p1	3.988	+	AF529233 TSC_hg19_v1_chr15_-_34659398 BC144236 AK290273 AK308910 AL832237 BC092463 NM_153613 BC048430 AY734233 AF542964	-1644	-	AF482429 NM_175741 BC114518 BC114567 BC033392 AK098568	-23096	+	BC008886 TSC_hg19_v1_chr15_-_34635355 BC063023 AB043104 NM_018648	-25889	-	BC032774 BC093673 BC104800 BC143254 AK097551 NM_181077	20721	-	BC032774 BC093673 BC104800 BC143254 AK097551 NM_001023567	166942	-	BX647673 TSC_hg19_v1_chr15_-_34875067	213845	-	AF529233|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##BC144236|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AK290273|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AK308910|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AL832237|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##BC092463|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##NM_153613|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##BC048430|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AY734233|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AF542964|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AF482429|C15orf55|256646|chromosome 15 open reading frame 55##NM_175741|C15orf55|256646|chromosome 15 open reading frame 55##BC114518|C15orf55|256646|chromosome 15 open reading frame 55##BC114567|C15orf55|256646|chromosome 15 open reading frame 55##BC033392|C15orf55|256646|chromosome 15 open reading frame 55##AK098568|C15orf55|256646|chromosome 15 open reading frame 55##BC008886|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##BC063023|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##AB043104|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##NM_018648|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##BC032774|GOLGA8A|23015|golgin A8 family, member A##BC093673|GOLGA8A|23015|golgin A8 family, member A##BC104800|GOLGA8A|23015|golgin A8 family, member A##BC143254|GOLGA8B|440270|golgin A8 family, member B##AK097551|GOLGA8B|440270|golgin A8 family, member B##NM_181077|GOLGA8A|23015|golgin A8 family, member A##BC032774|GOLGA8A|23015|golgin A8 family, member A##BC093673|GOLGA8A|23015|golgin A8 family, member A##BC104800|GOLGA8A|23015|golgin A8 family, member A##BC143254|GOLGA8B|440270|golgin A8 family, member B##AK097551|GOLGA8B|440270|golgin A8 family, member B##NM_001023567|GOLGA8B|440270|golgin A8 family, member B##BX647673|GOLGA8B|440270|golgin A8 family, member B	0.996702	0.0	denovo_WM_7:-42:0.231	denovo_WM_7:-44:0.724
chr19	10214936	10215083	reg1008483.p1	3.988	+	AY358276 BC142632 AB054064 NM_031917 AF230330	-1609	-	TSC_hg19_v1_chr19_+_10197045 AL137694 CU690214	-17947	+	BC026180 TSC_hg19_v1_chr19_+_10197007 AK002148 BC010847 BC035817	-18012	+	BC171852 NM_001040664 NM_001198690 NM_020230 BC033202 TSC_hg19_v1_chr19_+_10217035 BC009833 AJ292529 CU679511 AJ300588	1980	+	NM_002566 BC073827	7195	+	AB528489 BT006889 CR457134 CU678971 DQ890616 DQ896801 AF020833 U96074 TSC_hg19_v1_chr19_-_10230579 AK293374 AF094850 AK309944 AK316040 AK291320 BC000733 BC008469 AK316335 AK315896 AK296377 AK311624 NM_003755	15557	-	AY358276|ANGPTL6|83854|angiopoietin-like 6##BC142632|ANGPTL6|83854|angiopoietin-like 6##AB054064|ANGPTL6|83854|angiopoietin-like 6##NM_031917|ANGPTL6|83854|angiopoietin-like 6##AF230330|ANGPTL6|83854|angiopoietin-like 6##AL137694|C19orf66|55337|chromosome 19 open reading frame 66##BC026180|C19orf66|55337|chromosome 19 open reading frame 66##AK002148|C19orf66|55337|chromosome 19 open reading frame 66##BC010847|C19orf66|55337|chromosome 19 open reading frame 66##BC035817|C19orf66|55337|chromosome 19 open reading frame 66##BC171852|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001040664|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_001198690|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_020230|PPAN|56342|peter pan homolog (Drosophila)##BC033202|PPAN|56342|peter pan homolog (Drosophila)##BC009833|PPAN|56342|peter pan homolog (Drosophila)##AJ292529|PPAN|56342|peter pan homolog (Drosophila)##AJ300588|PPAN-P2RY11|692312|PPAN-P2RY11 readthrough##NM_002566|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BC073827|P2RY11|5032|purinergic receptor P2Y, G-protein coupled, 11##BT006889|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##CR457134|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##DQ890616|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##DQ896801|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AF020833|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##U96074|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK293374|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AF094850|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK309944|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK316040|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK291320|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##BC000733|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##BC008469|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK316335|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK315896|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##AK296377|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G##NM_003755|EIF3G|8666|eukaryotic translation initiation factor 3, subunit G	0.783732	0.0	denovo_WM_7:-35:0.445
chr22	39509865	39509984	reg1009317.p1	3.988	+	NM_001166002 NM_001166003 NM_001166004 NM_181773 BC069023 CR456481	-16654	+	AK092614 NM_021822 AK315650 BC061914 AF182420 CR456472 BC009683 BC024268 AB266487 AB462950 CU013022 CU013310 CU692904 JF262036	-36737	+	AK294810 NM_001006666 NM_145298	-73284	+	TSC_hg19_v1_chr22_-_39529023 BC128418	19123	-	DQ064603 AB528611 EU446785 CU690844 BC051773 TSC_hg19_v1_chr22_-_39548584 NM_175709 AK124408	38643	-	TSC_hg19_v1_chr22_-_39636906 NM_033016 X83705	126985	-	NM_001166002|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166003|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_001166004|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##NM_181773|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##BC069023|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##CR456481|APOBEC3H|164668|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H##AK092614|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##NM_021822|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK315650|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC061914|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AF182420|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CR456472|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC009683|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##BC024268|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AB266487|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013022|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##CU013310|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##JF262036|APOBEC3G|60489|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G##AK294810|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_001006666|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##NM_145298|APOBEC3F|200316|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F##BC128418|CBX7|23492|chromobox homolog 7##DQ064603|CBX7|23492|chromobox homolog 7##EU446785|CBX7|23492|chromobox homolog 7##BC051773|CBX7|23492|chromobox homolog 7##NM_175709|CBX7|23492|chromobox homolog 7##NM_033016|PDGFB|5155|platelet-derived growth factor beta polypeptide##X83705|PDGFB|5155|platelet-derived growth factor beta polypeptide	0.994107	0.0	
chr4	12846780	12846896	reg1015808.p1	3.988	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-1416306	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-2160437	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-2387828	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	639113	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	639137	-	AB463932 AF009801 EU446467 BC111966 NM_001189	699237	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	1.042882	0.0	denovo_WM_7:-54:0.338	denovo_WM_7:-57:0.286
chr7	73588560	73588666	reg1013627.p2	3.988	+	NM_001204426 TSC_hg19_v1_chr7_+_73507550 AK300382	-81096	+	TSC_hg19_v1_chr7_+_73498325 AB385563 AF134379	-90279	+	TSC_hg19_v1_chr7_+_73498160 D26309	-90458	+	TSC_hg19_v1_chr7_+_73588678 AK314749 AK297651	28	+	TSC_hg19_v1_chr7_+_73588685 AK290676 BC066928 D26068 NM_022170 NM_031992 BC010021 BC021214 AB385268 DQ891924 DQ895111 DQ895112	90	+	NM_014146 NM_032463 NM_032464	35473	+	NM_001204426|LIMK1|3984|LIM domain kinase 1##AK300382|LIMK1|3984|LIM domain kinase 1##AF134379|LIMK1|3984|LIM domain kinase 1##D26309|LIMK1|3984|LIM domain kinase 1##AK314749|EIF4H|7458|eukaryotic translation initiation factor 4H##AK297651|EIF4H|7458|eukaryotic translation initiation factor 4H##AK290676|EIF4H|7458|eukaryotic translation initiation factor 4H##BC066928|EIF4H|7458|eukaryotic translation initiation factor 4H##D26068|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_022170|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_031992|EIF4H|7458|eukaryotic translation initiation factor 4H##BC010021|EIF4H|7458|eukaryotic translation initiation factor 4H##BC021214|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ891924|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895111|EIF4H|7458|eukaryotic translation initiation factor 4H##DQ895112|EIF4H|7458|eukaryotic translation initiation factor 4H##NM_014146|LAT2|7462|linker for activation of T cells family, member 2##NM_032463|LAT2|7462|linker for activation of T cells family, member 2##NM_032464|LAT2|7462|linker for activation of T cells family, member 2	0.0	0.0	
chr8	42658580	42658671	reg1018163.p1	3.988	+	NM_001199279 NM_004198	-34697	-	BC069681 BC069703 BC069788 NM_000749 Y08417 U62438 CU686976 CU686982	-106000	+	TSC_hg19_v1_chr8_-_42397069 BC028600 NM_006749	-261564	-	AL832077 BC021721 AK223231 TSC_hg19_v1_chr8_-_42698469 AK001339 NM_018105 NM_199003	39836	-	BC039461 BC032393 BC013422 AK225086 AL136620 AK225568 AK027748 AK090864 AX746655 BC058289 BC044566 NM_001160223 NM_001160224 NM_001160225 NM_030954	93118	-	TSC_hg19_v1_chr8_+_42752068 BC048304 NM_032410	93427	+	NM_001199279|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##NM_004198|CHRNA6|8973|cholinergic receptor, nicotinic, alpha 6##BC069681|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069703|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC069788|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##NM_000749|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##Y08417|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##U62438|CHRNB3|1142|cholinergic receptor, nicotinic, beta 3##BC028600|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##NM_006749|SLC20A2|6575|solute carrier family 20 (phosphate transporter), member 2##AL832077|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC021721|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK223231|THAP1|55145|THAP domain containing, apoptosis associated protein 1##AK001339|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_018105|THAP1|55145|THAP domain containing, apoptosis associated protein 1##NM_199003|THAP1|55145|THAP domain containing, apoptosis associated protein 1##BC039461|RNF170|81790|ring finger protein 170##BC032393|RNF170|81790|ring finger protein 170##BC013422|RNF170|81790|ring finger protein 170##AK225086|RNF170|81790|ring finger protein 170##AL136620|RNF170|81790|ring finger protein 170##AK225568|RNF170|81790|ring finger protein 170##AK027748|RNF170|81790|ring finger protein 170##AK090864|RNF170|81790|ring finger protein 170##BC058289|RNF170|81790|ring finger protein 170##BC044566|RNF170|81790|ring finger protein 170##NM_001160223|RNF170|81790|ring finger protein 170##NM_001160224|RNF170|81790|ring finger protein 170##NM_001160225|RNF170|81790|ring finger protein 170##NM_030954|RNF170|81790|ring finger protein 170##BC048304|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032410|HOOK3|84376|hook homolog 3 (Drosophila)	0.0	0.0	
chr1	160110489	160110622	reg1013861.p1	3.987	+	NM_000702 AK124581 AK091617 AK225127 AK295048 AK314296 TSC_hg19_v1_chr1_+_160085548 BC047533 AB018321 BC052271	-25012	+	AK308115 NM_001206665 TSC_hg19_v1_chr1_-_160068754	-41867	-	TSC_hg19_v1_chr1_-_160068411 AF407274 AK055843 BC053881 NM_052868	-42140	-	NM_144699 AF506797 BC068570 BC036052 BX647234 AL833335 AK308286 BC094801	10820	+	BC028297 NM_001001734	36645	+	NM_001231 AK300713 AK313250 BC022289 S73775	49791	+	NM_000702|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##AK124581|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##AK091617|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##AK295048|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##AK314296|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##BC047533|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##AB018321|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##BC052271|ATP1A2|477|ATPase, Na+/K+ transporting, alpha 2 polypeptide##AK308115|IGSF8|93185|immunoglobulin superfamily, member 8##NM_001206665|IGSF8|93185|immunoglobulin superfamily, member 8##AF407274|IGSF8|93185|immunoglobulin superfamily, member 8##AK055843|IGSF8|93185|immunoglobulin superfamily, member 8##BC053881|IGSF8|93185|immunoglobulin superfamily, member 8##NM_052868|IGSF8|93185|immunoglobulin superfamily, member 8##NM_144699|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##AF506797|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##BC068570|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##BC036052|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##BX647234|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##AL833335|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##AK308286|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##BC094801|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##BC028297|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##NM_001001734|ATP1A4|480|ATPase, Na+/K+ transporting, alpha 4 polypeptide##NM_001231|CASQ1|844|calsequestrin 1 (fast-twitch, skeletal muscle)##AK300713|CASQ1|844|calsequestrin 1 (fast-twitch, skeletal muscle)##AK313250|CASQ1|844|calsequestrin 1 (fast-twitch, skeletal muscle)##BC022289|CASQ1|844|calsequestrin 1 (fast-twitch, skeletal muscle)##S73775|CASQ1|844|calsequestrin 1 (fast-twitch, skeletal muscle)	1.978084	0.0	denovo_WM_7:86:0.265	denovo_WM_7:87:0.687	denovo_WM_7:102:0.828
chr12	3947828	3947941	reg1012940.p2	3.987	+	TSC_hg19_v1_chr12_-_3862364 AK057608 NM_001144958 NM_032680	-85502	-	TSC_hg19_v1_chr12_-_3862276 BC004524 AK304017	-85616	-	AK125333 TSC_hg19_v1_chr12_-_3601984	-345899	-	AB529076 AK299372 AK314916 TSC_hg19_v1_chr12_-_3982536 CR749294 BX647487 BX640960 BC017569 BC031073 NM_020367	34616	-	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	435160	+	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	482507	+	AK057608|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_001144958|EFCAB4B|84766|EF-hand calcium binding domain 4B##NM_032680|EFCAB4B|84766|EF-hand calcium binding domain 4B##BC004524|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK304017|EFCAB4B|84766|EF-hand calcium binding domain 4B##AK125333|LOC100129223|100129223|uncharacterized LOC100129223##AK299372|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##AK314916|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##CR749294|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX647487|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BX640960|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC017569|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##BC031073|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_020367|PARP11|57097|poly (ADP-ribose) polymerase family, member 11##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5	0.360443	0.0	denovo_WM_7:9:0.348
chr15	31578187	31578325	reg1013472.p1	3.987	+	NM_001243538	-55207	-	GQ502181 HM135791 NM_001252020	-124828	-	AF071787 BC033627 BC005892 BC017849 HM135790 BC058286 BC070356 NM_001252024 NM_001252030 NM_002420	-184339	-	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	41082	+	AJ430383 NM_130901	369285	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	584573	-	NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF071787|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC033627|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC005892|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC017849|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135790|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC058286|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC070356|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252024|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252030|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_002420|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A	0.0	0.0	
chr2	81900192	81900314	reg1007818.p2	3.987	+	TSC_hg19_v1_chr2_-_80531838 AK225779	-1368410	-	TSC_hg19_v1_chr2_-_80531719 AK290512	-1368528	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	-1368728	-	CR457139 TSC_hg19_v1_chr2_-_84686373 Z68204 AK225737 AK313290 AF104921 AK291082 BC000504	2786117	-	AK296741 TSC_hg19_v1_chr2_-_84686396	2786142	-	NM_003849	2786332	-	AK225779|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##CR457139|SUCLG1|8802|succinate-CoA ligase, alpha subunit##Z68204|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK225737|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK313290|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AF104921|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK291082|SUCLG1|8802|succinate-CoA ligase, alpha subunit##BC000504|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit	0.0	0.0	
chr6	144538001	144538141	reg1014615.p2	3.987	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-66350	+	NM_031287 TSC_hg19_v1_chr6_-_144416757	-121309	-	AB528231 AM393071 BC000198 TSC_hg19_v1_chr6_-_144416703 AK312079 AK074417	-121400	-	TSC_hg19_v1_chr6_+_144607461 AK292506	69409	+	NM_007124 X69086	74847	+	AK124757 TSC_hg19_v1_chr6_+_146056061	1517963	+	NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##NM_031287|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AM393071|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##BC000198|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK312079|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK074417|SF3B5|83443|splicing factor 3b, subunit 5, 10kDa##AK292506|UTRN|7402|utrophin##NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK124757|LOC100507557|100507557|uncharacterized LOC100507557	0.0	0.022666	
chr6	27441536	27441625	reg1014575.p2	3.987	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-879	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-85025	+	AF352327 AF336874 BC107050 NM_032030	-149022	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	334143	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	334361	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	336202	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	1.014254	0.0	
chr12	133287028	133287094	reg1013810.p1	3.986	+	TSC_hg19_v1_chr12_+_133264236 AF250136 NM_018663 BC073997 AY044439	-22857	+	TSC_hg19_v1_chr12_-_133264011 AF128542	-23040	-	TSC_hg19_v1_chr12_-_133263981 U49356 S60080 BC144561 L09561 NM_006231	-23121	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	375	+	AK025933 TSC_hg19_v1_chr12_-_133306584	19497	-	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	51359	-	AF250136|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##NM_018663|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##BC073997|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AY044439|PXMP2|5827|peroxisomal membrane protein 2, 22kDa##AF128542|POLE|5426|polymerase (DNA directed), epsilon##U49356|POLE|5426|polymerase (DNA directed), epsilon##S60080|POLE|5426|polymerase (DNA directed), epsilon##BC144561|POLE|5426|polymerase (DNA directed), epsilon##L09561|POLE|5426|polymerase (DNA directed), epsilon##NM_006231|POLE|5426|polymerase (DNA directed), epsilon##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2	0.0	0.0	
chr13	41306885	41307065	reg1006603.p1	3.986	+	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	-66263	-	TSC_hg19_v1_chr13_+_40229813 AK294443 NM_001145079 NM_020751 BC051723 CR627406 AB032960 AF116827	-1077114	+	NM_005780 TSC_hg19_v1_chr13_-_40177356	-1129613	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	38317	-	TSC_hg19_v1_chr13_-_41345327 NM_005830	38357	-	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	56614	+	BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##AK294443|COG6|57511|component of oligomeric golgi complex 6##NM_001145079|COG6|57511|component of oligomeric golgi complex 6##NM_020751|COG6|57511|component of oligomeric golgi complex 6##BC051723|COG6|57511|component of oligomeric golgi complex 6##CR627406|COG6|57511|component of oligomeric golgi complex 6##AB032960|COG6|57511|component of oligomeric golgi complex 6##AF116827|COG6|57511|component of oligomeric golgi complex 6##NM_005780|LHFP|10186|lipoma HMGIC fusion partner##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15	0.971085	0.0	denovo_WM_7:-88:0.572
chr17	17936791	17936940	reg1011246.p1	3.986	+	NM_001130090 NM_001130091 NM_001130092 NM_031294 TSC_hg19_v1_chr17_+_17876186 BC047873 AL136926 AK293011 BC040276 BC050419 BC050665 AK093317 AX748051	-60665	+	TSC_hg19_v1_chr17_-_17875715 AK124331 AK295111 AK301944 AK303305 AK299872 AF467441 BC051650 AK294846 NM_001033551 NM_001082968	-61124	-	TSC_hg19_v1_chr17_-_17740317 BC057388 NM_001005291 NM_004176	-196541	-	AM393241 CU678578 CU689282 AB528073 AF070584 BC032126 AF052185 AY203943 TSC_hg19_v1_chr17_-_17942481 BC004114 NM_145691 AK290257 AK294487 AK296382	5538	-	TSC_hg19_v1_chr17_+_17942750 BC041829 NM_024052 AK315083 AK074284 AK127580 BC000636	5942	+	TSC_hg19_v1_chr17_+_17991289 AK313362 BC062572 BC000493 NM_001388 AK297569 X80754 AK295575 DQ890768 DQ893929 BT006976	54403	+	NM_001130090|LRRC48|83450|leucine rich repeat containing 48##NM_001130091|LRRC48|83450|leucine rich repeat containing 48##NM_001130092|LRRC48|83450|leucine rich repeat containing 48##NM_031294|LRRC48|83450|leucine rich repeat containing 48##BC047873|LRRC48|83450|leucine rich repeat containing 48##AL136926|LRRC48|83450|leucine rich repeat containing 48##AK293011|LRRC48|83450|leucine rich repeat containing 48##BC040276|LRRC48|83450|leucine rich repeat containing 48##BC050419|LRRC48|83450|leucine rich repeat containing 48##BC050665|LRRC48|83450|leucine rich repeat containing 48##AK093317|LRRC48|83450|leucine rich repeat containing 48##AK124331|TOM1L2|146691|target of myb1-like 2 (chicken)##AK295111|TOM1L2|146691|target of myb1-like 2 (chicken)##AK301944|TOM1L2|146691|target of myb1-like 2 (chicken)##AK303305|TOM1L2|146691|target of myb1-like 2 (chicken)##AK299872|TOM1L2|146691|target of myb1-like 2 (chicken)##AF467441|TOM1L2|146691|target of myb1-like 2 (chicken)##BC051650|TOM1L2|146691|target of myb1-like 2 (chicken)##AK294846|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001033551|TOM1L2|146691|target of myb1-like 2 (chicken)##NM_001082968|TOM1L2|146691|target of myb1-like 2 (chicken)##BC057388|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_001005291|SREBF1|6720|sterol regulatory element binding transcription factor 1##NM_004176|SREBF1|6720|sterol regulatory element binding transcription factor 1##AM393241|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF070584|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC032126|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AF052185|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AY203943|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC004114|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##NM_145691|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK290257|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##AK294487|ATPAF2|91647|ATP synthase mitochondrial F1 complex assembly factor 2##BC041829|C17orf39|79018|chromosome 17 open reading frame 39##NM_024052|C17orf39|79018|chromosome 17 open reading frame 39##AK315083|C17orf39|79018|chromosome 17 open reading frame 39##AK074284|C17orf39|79018|chromosome 17 open reading frame 39##AK127580|C17orf39|79018|chromosome 17 open reading frame 39##BC000636|C17orf39|79018|chromosome 17 open reading frame 39##AK313362|DRG2|1819|developmentally regulated GTP binding protein 2##BC062572|DRG2|1819|developmentally regulated GTP binding protein 2##BC000493|DRG2|1819|developmentally regulated GTP binding protein 2##NM_001388|DRG2|1819|developmentally regulated GTP binding protein 2##AK297569|DRG2|1819|developmentally regulated GTP binding protein 2##X80754|DRG2|1819|developmentally regulated GTP binding protein 2##AK295575|DRG2|1819|developmentally regulated GTP binding protein 2##DQ890768|DRG2|1819|developmentally regulated GTP binding protein 2##DQ893929|DRG2|1819|developmentally regulated GTP binding protein 2##BT006976|DRG2|1819|developmentally regulated GTP binding protein 2	0.0	0.0	
chr14	70044450	70044570	reg1016897.p1	3.985	+	TSC_hg19_v1_chr14_+_69951404 AK126770 NM_001161498 BC146872	-93030	+	TSC_hg19_v1_chr14_+_69865419 BC047682	-179074	+	TSC_hg19_v1_chr14_+_69865408 NM_001252148 NM_001252150 NM_018375 AK222547 AK002136 AK311104	-179115	+	AK309302 NM_014734 TSC_hg19_v1_chr14_+_70078312 BC064697	33800	+	TSC_hg19_v1_chr14_+_70078414 AK311470 D87434	33881	+	TSC_hg19_v1_chr14_+_70233809 BX640605	189296	+	AK126770|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##NM_001161498|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC146872|PLEKHD1|400224|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1##BC047682|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252148|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_001252150|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##NM_018375|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK222547|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK002136|SLC39A9|55334|solute carrier family 39 (zinc transporter), member 9##AK309302|KIAA0247|9766|KIAA0247##NM_014734|KIAA0247|9766|KIAA0247##BC064697|KIAA0247|9766|KIAA0247##D87434|KIAA0247|9766|KIAA0247##BX640605|SRSF5|6430|serine/arginine-rich splicing factor 5	1.541669	0.0	denovo_WM_7:71:0.267
chr16	29654683	29654756	reg1017139.p1	3.985	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	-29677	-	TSC_hg19_v1_chr16_-_29606667 AK316536	-48046	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-48374	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	19613	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	19846	+	TSC_hg19_v1_chr16_+_29674568 J04168 J04536 NM_003123	19854	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin##J04536|SPN|6693|sialophorin##NM_003123|SPN|6693|sialophorin	0.018124	0.0	
chr17_ctg5_hap1	49881	50002	reg1014522.p1	3.985	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.990819	0.0	denovo_WM_7:-50:0.237	denovo_WM_7:-51:0.237	denovo_WM_7:-52:0.237	denovo_WM_7:-53:0.237
chr18	57529670	57529783	reg1004958.p2	3.985	+	NM_133459 TSC_hg19_v1_chr18_-_57364656	-165076	-	TSC_hg19_v1_chr18_-_57364576 AB384657 AY358347 AB075863	-165135	-	TSC_hg19_v1_chr18_-_57026487 DQ891254 DQ894440 U09716 AK223208 AK225108 AK312869 BC008401 BC032330 BC017858 X71661 AK301244 NM_005570	-503240	-	NM_021127 TSC_hg19_v1_chr18_+_57567227 AK311943 D90070 BC032663 BC013120	37503	+	AK314130 NM_005912	510274	-	AF217289 BC101047 BC101048 BC101049 NM_031891	1628048	+	NM_133459|CCBE1|147372|collagen and calcium binding EGF domains 1##AY358347|CCBE1|147372|collagen and calcium binding EGF domains 1##AB075863|CCBE1|147372|collagen and calcium binding EGF domains 1##DQ891254|LMAN1|3998|lectin, mannose-binding, 1##DQ894440|LMAN1|3998|lectin, mannose-binding, 1##U09716|LMAN1|3998|lectin, mannose-binding, 1##AK223208|LMAN1|3998|lectin, mannose-binding, 1##AK225108|LMAN1|3998|lectin, mannose-binding, 1##AK312869|LMAN1|3998|lectin, mannose-binding, 1##BC008401|LMAN1|3998|lectin, mannose-binding, 1##BC032330|LMAN1|3998|lectin, mannose-binding, 1##BC017858|LMAN1|3998|lectin, mannose-binding, 1##X71661|LMAN1|3998|lectin, mannose-binding, 1##AK301244|LMAN1|3998|lectin, mannose-binding, 1##NM_005570|LMAN1|3998|lectin, mannose-binding, 1##NM_021127|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK311943|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##D90070|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC032663|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##BC013120|PMAIP1|5366|phorbol-12-myristate-13-acetate-induced protein 1##AK314130|MC4R|4160|melanocortin 4 receptor##NM_005912|MC4R|4160|melanocortin 4 receptor##AF217289|CDH20|28316|cadherin 20, type 2##BC101047|CDH20|28316|cadherin 20, type 2##BC101048|CDH20|28316|cadherin 20, type 2##BC101049|CDH20|28316|cadherin 20, type 2##NM_031891|CDH20|28316|cadherin 20, type 2	0.0	0.0	
chr2	207322223	207322342	reg1012256.p2	3.985	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	-13949	+	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	-182815	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	-239584	-	AK129906 TSC_hg19_v1_chr2_+_207406857	84554	+	NM_001102659	184859	+	DQ516347 NM_001093730	260837	-	AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23##AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK129906|ADAM23|8745|ADAM metallopeptidase domain 23##NM_001102659|LOC200726|200726|hCG1657980##DQ516347|DYTN|391475|dystrotelin##NM_001093730|DYTN|391475|dystrotelin	0.29471	0.0	denovo_WM_7:19:0.251
chr5	137800408	137800474	reg1016077.p2	3.985	+	AY562240 TSC_hg19_v1_chr5_+_137774899 AF251041	-25535	+	TSC_hg19_v1_chr5_+_137774760 AK056193 AK291101 AK223611 BC006218 NM_016606 AK293480 AK290547	-25713	+	TSC_hg19_v1_chr5_+_137688386 BC146788 AB029005 AB527166	-112006	+	TSC_hg19_v1_chr5_+_137801167 AK298101 AK301065	730	+	TSC_hg19_v1_chr5_+_137801192 NM_001964 X52541 BC073983 M62829 M80583 BC041701 CU687282 AB591041 EU832310 EU832395	873	+	TSC_hg19_v1_chr5_-_137848536 X80916	48112	-	AY562240|REEP2|51308|receptor accessory protein 2##AF251041|REEP2|51308|receptor accessory protein 2##AK056193|REEP2|51308|receptor accessory protein 2##AK291101|REEP2|51308|receptor accessory protein 2##AK223611|REEP2|51308|receptor accessory protein 2##BC006218|REEP2|51308|receptor accessory protein 2##NM_016606|REEP2|51308|receptor accessory protein 2##AK293480|REEP2|51308|receptor accessory protein 2##AK290547|REEP2|51308|receptor accessory protein 2##BC146788|KDM3B|51780|lysine (K)-specific demethylase 3B##AB029005|KDM3B|51780|lysine (K)-specific demethylase 3B##AK298101|EGR1|1958|early growth response 1##AK301065|EGR1|1958|early growth response 1##NM_001964|EGR1|1958|early growth response 1##X52541|EGR1|1958|early growth response 1##BC073983|EGR1|1958|early growth response 1##M62829|EGR1|1958|early growth response 1##M80583|EGR1|1958|early growth response 1##BC041701|EGR1|1958|early growth response 1##EU832310|EGR1|1958|early growth response 1##EU832395|EGR1|1958|early growth response 1##X80916|ETF1|2107|eukaryotic translation termination factor 1	0.0	0.0	
chr6	139276548	139276670	reg1012848.p1	3.985	+	NM_001077706 NM_001195037	-159362	+	AK092592 AX747618 NM_001242740	-181808	-	AY167571 NM_015439 BC108717 TSC_hg19_v1_chr6_+_139094905 AK300672 AL050197 AJ420568 BC000758 BC004464 BC080566 BC013019	-181819	+	BC021211 TSC_hg19_v1_chr6_-_139309122 AB209143	32468	-	TSC_hg19_v1_chr6_-_139309357 BC035286 AK312938	32739	-	TSC_hg19_v1_chr6_-_139309391 BC012764 NM_001128617 NM_031922	32801	-	NM_001077706|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##NM_001195037|ECT2L|345930|epithelial cell transforming sequence 2 oncogene-like##AK092592|LOC100507462|100507462|uncharacterized LOC100507462##NM_001242740|LOC100507462|100507462|uncharacterized LOC100507462##AY167571|CCDC28A|25901|coiled-coil domain containing 28A##NM_015439|CCDC28A|25901|coiled-coil domain containing 28A##BC108717|CCDC28A|25901|coiled-coil domain containing 28A##AK300672|CCDC28A|25901|coiled-coil domain containing 28A##AL050197|CCDC28A|25901|coiled-coil domain containing 28A##AJ420568|CCDC28A|25901|coiled-coil domain containing 28A##BC000758|CCDC28A|25901|coiled-coil domain containing 28A##BC004464|CCDC28A|25901|coiled-coil domain containing 28A##BC080566|CCDC28A|25901|coiled-coil domain containing 28A##BC013019|CCDC28A|25901|coiled-coil domain containing 28A##BC021211|REPS1|85021|RALBP1 associated Eps domain containing 1##AB209143|REPS1|85021|RALBP1 associated Eps domain containing 1##BC035286|REPS1|85021|RALBP1 associated Eps domain containing 1##AK312938|REPS1|85021|RALBP1 associated Eps domain containing 1##BC012764|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_001128617|REPS1|85021|RALBP1 associated Eps domain containing 1##NM_031922|REPS1|85021|RALBP1 associated Eps domain containing 1	0.999655	0.0	denovo_WM_7:-21:0.298	denovo_WM_7:-22:0.298	denovo_WM_7:-23:0.298
chr7	117002321	117002403	reg1008617.p1	3.985	+	BC078170 AK056742 NM_003391 X07876	-39027	-	TSC_hg19_v1_chr7_+_116660294 AY009152 AY009153 AK297510	-341997	+	TSC_hg19_v1_chr7_+_116660271 AK093212	-342095	+	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	65183	-	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	117676	+	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	511119	-	BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##AY009152|ST7|7982|suppression of tumorigenicity 7##AY009153|ST7|7982|suppression of tumorigenicity 7##AK297510|ST7|7982|suppression of tumorigenicity 7##AK093212|ST7|7982|suppression of tumorigenicity 7##HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2	0.091618	0.0	
chr7	128574241	128574329	reg1017075.p1	3.985	+	TSC_hg19_v1_chr7_-_128550763 AK122706 NM_001135914 NM_199349	-23519	-	TSC_hg19_v1_chr7_-_128543406 AK095464	-30884	-	NM_001195150	-67822	+	AK293654 AY693665 AY693668 NM_001098629 NM_001098630 NM_001242452 DQ995492 U51127 AK297083 AY504947 AY693666 AY693667 EU258896	3751	+	DQ995493 AY693669 BC004139 BC004201 DQ277633 NM_032643	3973	+	EU258898 NM_001098627 DQ995494 AY504946 DQ277634	6523	+	AK122706|KCP|375616|kielin/chordin-like protein##NM_001135914|KCP|375616|kielin/chordin-like protein##NM_199349|KCP|375616|kielin/chordin-like protein##AK095464|KCP|375616|kielin/chordin-like protein##NM_001195150|LOC100130705|100130705|uncharacterized LOC100130705##AK293654|IRF5|3663|interferon regulatory factor 5##AY693665|IRF5|3663|interferon regulatory factor 5##AY693668|IRF5|3663|interferon regulatory factor 5##NM_001098629|IRF5|3663|interferon regulatory factor 5##NM_001098630|IRF5|3663|interferon regulatory factor 5##NM_001242452|IRF5|3663|interferon regulatory factor 5##DQ995492|IRF5|3663|interferon regulatory factor 5##U51127|IRF5|3663|interferon regulatory factor 5##AK297083|IRF5|3663|interferon regulatory factor 5##AY504947|IRF5|3663|interferon regulatory factor 5##AY693666|IRF5|3663|interferon regulatory factor 5##AY693667|IRF5|3663|interferon regulatory factor 5##EU258896|IRF5|3663|interferon regulatory factor 5##AY693669|IRF5|3663|interferon regulatory factor 5##BC004139|IRF5|3663|interferon regulatory factor 5##BC004201|IRF5|3663|interferon regulatory factor 5##DQ277633|IRF5|3663|interferon regulatory factor 5##NM_032643|IRF5|3663|interferon regulatory factor 5##EU258898|IRF5|3663|interferon regulatory factor 5##NM_001098627|IRF5|3663|interferon regulatory factor 5##DQ995494|IRF5|3663|interferon regulatory factor 5##AY504946|IRF5|3663|interferon regulatory factor 5##DQ277634|IRF5|3663|interferon regulatory factor 5	0.973951	0.0	denovo_WM_7:2:0.348	denovo_WM_7:3:0.601
chr7	80267725	80267889	reg1014953.p1	3.985	+	TSC_hg19_v1_chr7_+_80267800 NM_000072 NM_001001548	-1	+	NM_001001547 AK129899 AK300101 AK312920	-36286	+	NM_001102386 BC147016 BC147017	-126525	-	TSC_hg19_v1_chr7_+_80267957 BC008406	136	+	TSC_hg19_v1_chr7_+_80267983 M98398 M98399 M24795	196	+	L06850 NM_001127443 NM_001127444	7890	+	NM_000072|CD36|948|CD36 molecule (thrombospondin receptor)##NM_001001548|CD36|948|CD36 molecule (thrombospondin receptor)##NM_001001547|CD36|948|CD36 molecule (thrombospondin receptor)##AK129899|CD36|948|CD36 molecule (thrombospondin receptor)##AK300101|CD36|948|CD36 molecule (thrombospondin receptor)##AK312920|CD36|948|CD36 molecule (thrombospondin receptor)##NM_001102386|GNAT3|346562|guanine nucleotide binding protein, alpha transducing 3##BC147016|GNAT3|346562|guanine nucleotide binding protein, alpha transducing 3##BC147017|GNAT3|346562|guanine nucleotide binding protein, alpha transducing 3##BC008406|CD36|948|CD36 molecule (thrombospondin receptor)##M98398|CD36|948|CD36 molecule (thrombospondin receptor)##M98399|CD36|948|CD36 molecule (thrombospondin receptor)##M24795|CD36|948|CD36 molecule (thrombospondin receptor)##L06850|CD36|948|CD36 molecule (thrombospondin receptor)##NM_001127443|CD36|948|CD36 molecule (thrombospondin receptor)##NM_001127444|CD36|948|CD36 molecule (thrombospondin receptor)	1.985693	0.0	denovo_WM_7:22:0.960	denovo_WM_7:-82:0.884
chr16	8955750	8955841	reg1015503.p2	3.984	+	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-64097	+	TSC_hg19_v1_chr16_-_8891497 BC015912 AK225638 AL080088 AK314404 NM_015421 AK093383	-64250	-	TSC_hg19_v1_chr16_+_8814575 AK290501 NM_001127448 AK310771	-141215	+	NM_001042476 BC001333	6457	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	7065	-	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	101500	-	NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##BC015912|TMEM186|25880|transmembrane protein 186##AK225638|TMEM186|25880|transmembrane protein 186##AL080088|TMEM186|25880|transmembrane protein 186##AK314404|TMEM186|25880|transmembrane protein 186##NM_015421|TMEM186|25880|transmembrane protein 186##AK093383|TMEM186|25880|transmembrane protein 186##AK290501|ABAT|18|4-aminobutyrate aminotransferase##NM_001127448|ABAT|18|4-aminobutyrate aminotransferase##AK310771|ABAT|18|4-aminobutyrate aminotransferase##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)	1.985296	0.110033	denovo_WM_7:57:0.953	denovo_WM_7:72:0.955
chr2	11969704	11969884	reg1000890.p2	3.984	+	BC030537 NM_145693 TSC_hg19_v1_chr2_+_11886757 AK290235 D80010	-83019	+	AY429107 DQ893289 EU176212 EU176513 EU176803 BC022501 Y10148 BC037776 TSC_hg19_v1_chr2_-_11810322 NM_012344	-159503	-	TSC_hg19_v1_chr2_+_11682836 AF245389 NM_033090	-286951	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	887459	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	888122	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	888603	+	BC030537|LPIN1|23175|lipin 1##NM_145693|LPIN1|23175|lipin 1##AK290235|LPIN1|23175|lipin 1##D80010|LPIN1|23175|lipin 1##AY429107|NTSR2|23620|neurotensin receptor 2##DQ893289|NTSR2|23620|neurotensin receptor 2##EU176212|NTSR2|23620|neurotensin receptor 2##EU176513|NTSR2|23620|neurotensin receptor 2##EU176803|NTSR2|23620|neurotensin receptor 2##BC022501|NTSR2|23620|neurotensin receptor 2##Y10148|NTSR2|23620|neurotensin receptor 2##BC037776|NTSR2|23620|neurotensin receptor 2##NM_012344|NTSR2|23620|neurotensin receptor 2##AF245389|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_033090|GREB1|9687|growth regulation by estrogen in breast cancer 1##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)	0.0	0.0	
chr8	23020244	23020424	reg1009035.p1	3.984	+	NM_003841 AK298664 BC017852 TSC_hg19_v1_chr8_+_22960433 AK313213 AK298718 AF012536 AY358281 AF016267 AF033854 AF014794 BC125041 BC125042 AF020502 AF012629 CR541857	-59854	+	TSC_hg19_v1_chr8_-_22926545 AF192548 AF016266 AF016268 AF153687 AK291216 AF012535 AF016849 AY358277 BX538104 AK298602 BC001281 NM_003842 NM_147187	-93740	-	AB451272 AB451399 AF012628 AF018657 AF018658 AF020501 AF022386 CR541898 AB385139 TSC_hg19_v1_chr8_-_22926429	-93915	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	1161	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	62278	-	TSC_hg19_v1_chr8_-_23082664 NM_003844	62332	-	NM_003841|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AK298664|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##BC017852|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AK313213|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AK298718|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF012536|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AY358281|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF016267|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF033854|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF014794|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##BC125041|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##BC125042|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF020502|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF012629|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##CR541857|TNFRSF10C|8794|tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain##AF192548|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF016266|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF016268|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF153687|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AK291216|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF012535|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF016849|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AY358277|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##BX538104|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AK298602|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##BC001281|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##NM_003842|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##NM_147187|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AB451272|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AB451399|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF012628|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF018657|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF018658|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF020501|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF022386|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##CR541898|TNFRSF10B|8795|tumor necrosis factor receptor superfamily, member 10b##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a	0.0	0.0	
chr9	43389617	43389728	reg1016347.p1	3.984	+	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-256185	-	NM_001099279 NM_199244	-672439	+	AL136793 NM_001012419 NM_001012421 BC140809 BC171793 AB462947 AM393131 BC146681	-1021314	+	NM_001145196	241057	-	TSC_hg19_v1_chr9_+_43684876 NM_001201380	295171	+	TSC_hg19_v1_chr9_+_45441926 BC006438	2052254	+	AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##BC006438|LOC100132167|100132167|uncharacterized LOC100132167	0.991002	0.0	denovo_WM_7:-53:0.330	denovo_WM_7:-54:0.330	denovo_WM_7:-55:0.330
chr10	111916286	111916365	reg1011301.p2	3.983	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-148358	+	TSC_hg19_v1_chr10_+_111767741 BX647403 NM_001121 NM_016824 BC062559 BX648016	-148596	+	NM_019903 AB209810 BC057285	-150544	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	51034	+	BC012907 NM_001008541	53663	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	69496	+	AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##BX647403|ADD3|120|adducin 3 (gamma)##NM_001121|ADD3|120|adducin 3 (gamma)##NM_016824|ADD3|120|adducin 3 (gamma)##BC062559|ADD3|120|adducin 3 (gamma)##BX648016|ADD3|120|adducin 3 (gamma)##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1	0.999635	0.0	
chr1	161009109	161009203	reg1006725.p2	3.983	+	AF111713 TSC_hg19_v1_chr1_-_161008767 NM_001113205 NM_001113206 NM_001113207 AK299487	-398	-	AF191495 TSC_hg19_v1_chr1_-_161008713 BC001699 BC038219	-442	-	TSC_hg19_v1_chr1_-_160990981 NM_016946	-18105	-	AK314876 BC035505 TSC_hg19_v1_chr1_-_161015745	6561	-	TSC_hg19_v1_chr1_-_161015769 NM_007122 NM_207005	6611	-	TSC_hg19_v1_chr1_-_161039466 AB463226 BC053688 BC025732	30311	-	NM_001113205|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113206|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_001113207|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##AK299487|F11R|50848|F11 receptor##BC001699|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##BC038219|TSTD1|100131187|thiosulfate sulfurtransferase (rhodanese)-like domain containing 1##NM_016946|F11R|50848|F11 receptor##AK314876|USF1|7391|upstream transcription factor 1##BC035505|USF1|7391|upstream transcription factor 1##NM_007122|USF1|7391|upstream transcription factor 1##NM_207005|USF1|7391|upstream transcription factor 1##BC053688|ARHGAP30|257106|Rho GTPase activating protein 30##BC025732|ARHGAP30|257106|Rho GTPase activating protein 30	2.952343	0.178563	denovo_WM_7:-54:0.822	denovo_WM_7:-70:0.463	denovo_WM_7:-71:0.445	denovo_WM_7:-85:0.428	denovo_WM_7:-86:0.515
chr1	205628177	205628320	reg1014673.p1	3.983	+	NM_001973 NM_021795	-26249	-	BC063676 M85164 M85165 TSC_hg19_v1_chr1_-_205601025 BC040145	-27342	-	BC036549 AK091896 AX747240 TSC_hg19_v1_chr1_+_205538184 AK304120 AK090831 AX746641 AK295148	-90035	+	BC050416 AY033593 TSC_hg19_v1_chr1_-_205649588	21320	-	AK313479 TSC_hg19_v1_chr1_-_205649636 AK290364 FJ805258 FJ805259 FJ805260 FJ805261 NM_033102 EF632109	21433	-	TSC_hg19_v1_chr1_-_205719084 CR457339 AB528490 DQ891218 DQ894401	90841	-	NM_001973|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##NM_021795|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC063676|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85164|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##M85165|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC040145|ELK4|2005|ELK4, ETS-domain protein (SRF accessory protein 1)##BC036549|MFSD4|148808|major facilitator superfamily domain containing 4##AK091896|MFSD4|148808|major facilitator superfamily domain containing 4##AK304120|MFSD4|148808|major facilitator superfamily domain containing 4##AK090831|MFSD4|148808|major facilitator superfamily domain containing 4##AK295148|MFSD4|148808|major facilitator superfamily domain containing 4##BC050416|SLC45A3|85414|solute carrier family 45, member 3##AY033593|SLC45A3|85414|solute carrier family 45, member 3##AK313479|SLC45A3|85414|solute carrier family 45, member 3##AK290364|SLC45A3|85414|solute carrier family 45, member 3##NM_033102|SLC45A3|85414|solute carrier family 45, member 3##CR457339|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##DQ891218|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1##DQ894401|NUCKS1|64710|nuclear casein kinase and cyclin-dependent kinase substrate 1	0.0	0.0	
chr1	51762823	51762973	reg1009443.p2	3.983	+	TSC_hg19_v1_chr1_+_51702013 AK313140 AB024703 AF151881 BC020964 AB385089	-60684	+	BC036670 TSC_hg19_v1_chr1_+_51701971 BC047654	-60924	+	TSC_hg19_v1_chr1_+_51701944 NM_014372	-60949	+	BC028374 NM_001080494	25011	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	33334	-	AF007170 NM_001144832	47840	-	AK313140|RNF11|26994|ring finger protein 11##AB024703|RNF11|26994|ring finger protein 11##AF151881|RNF11|26994|ring finger protein 11##BC020964|RNF11|26994|ring finger protein 11##BC036670|RNF11|26994|ring finger protein 11##BC047654|RNF11|26994|ring finger protein 11##NM_014372|RNF11|26994|ring finger protein 11##BC028374|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001080494|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A	0.988788	0.0	denovo_WM_7:-2:0.976
chr15	37392117	37392280	reg1009424.p1	3.983	+	TSC_hg19_v1_chr15_-_37391935 AF178948 AF179896 AF179897 AF179898 AF179899	-279	-	AK056620 NM_172316 AB463111 CU690674 EU446635 EU831824 AK055936	-559	-	CU674744 EU831754 EU831831 TSC_hg19_v1_chr15_-_37390403 AK294411 AK311546 AK056038 NM_172315	-1732	-	TSC_hg19_v1_chr15_-_37392322 AK226072	133	-	TSC_hg19_v1_chr15_-_37392751 AK056216 NM_170674 NM_170675 NM_170676 NM_170677	358	-	TSC_hg19_v1_chr15_-_37393466 BC050431 NM_001220482 NM_002399 BC001516 BC001844 BC007202 AK300247	1244	-	AF178948|MEIS2|4212|Meis homeobox 2##AF179896|MEIS2|4212|Meis homeobox 2##AF179897|MEIS2|4212|Meis homeobox 2##AF179898|MEIS2|4212|Meis homeobox 2##AF179899|MEIS2|4212|Meis homeobox 2##AK056620|MEIS2|4212|Meis homeobox 2##NM_172316|MEIS2|4212|Meis homeobox 2##EU446635|MEIS2|4212|Meis homeobox 2##EU831824|MEIS2|4212|Meis homeobox 2##AK055936|MEIS2|4212|Meis homeobox 2##EU831754|MEIS2|4212|Meis homeobox 2##EU831831|MEIS2|4212|Meis homeobox 2##AK294411|MEIS2|4212|Meis homeobox 2##AK311546|MEIS2|4212|Meis homeobox 2##AK056038|MEIS2|4212|Meis homeobox 2##NM_172315|MEIS2|4212|Meis homeobox 2##AK226072|MEIS2|4212|Meis homeobox 2##AK056216|MEIS2|4212|Meis homeobox 2##NM_170674|MEIS2|4212|Meis homeobox 2##NM_170675|MEIS2|4212|Meis homeobox 2##NM_170676|MEIS2|4212|Meis homeobox 2##NM_170677|MEIS2|4212|Meis homeobox 2##BC050431|MEIS2|4212|Meis homeobox 2##NM_001220482|MEIS2|4212|Meis homeobox 2##NM_002399|MEIS2|4212|Meis homeobox 2##BC001516|MEIS2|4212|Meis homeobox 2##BC001844|MEIS2|4212|Meis homeobox 2##BC007202|MEIS2|4212|Meis homeobox 2##AK300247|MEIS2|4212|Meis homeobox 2	0.0	0.0	
chr15	90395100	90395236	reg1001824.p2	3.983	+	TSC_hg19_v1_chr15_-_90358085 AB209918 NM_001150 AK298242	-37096	-	AB462940 X13276 TSC_hg19_v1_chr15_-_90349860 BC058928 M22324	-45292	-	AK298339 TSC_hg19_v1_chr15_-_90347590	-47598	-	TSC_hg19_v1_chr15_-_90437227 DQ892982 DQ896230 BC002785 AL110108 BC007773 AK222698 AK294712 X99459 BC010020 AK312467	42049	-	NM_005829	42448	-	AK093274 AX748027 CU691000 TSC_hg19_v1_chr15_-_90456145 AK000495 BC053602 NM_001199058 NM_182616	60937	-	AB209918|ANPEP|290|alanyl (membrane) aminopeptidase##NM_001150|ANPEP|290|alanyl (membrane) aminopeptidase##AK298242|ANPEP|290|alanyl (membrane) aminopeptidase##X13276|ANPEP|290|alanyl (membrane) aminopeptidase##BC058928|ANPEP|290|alanyl (membrane) aminopeptidase##M22324|ANPEP|290|alanyl (membrane) aminopeptidase##AK298339|ANPEP|290|alanyl (membrane) aminopeptidase##DQ892982|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##DQ896230|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##BC002785|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AL110108|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##BC007773|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK222698|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK294712|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##X99459|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##BC010020|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK312467|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##NM_005829|AP3S2|10239|adaptor-related protein complex 3, sigma 2 subunit##AK093274|C15orf38|348110|chromosome 15 open reading frame 38##AK000495|C15orf38-AP3S2|100526783|C15orf38-AP3S2 readthrough##BC053602|C15orf38|348110|chromosome 15 open reading frame 38##NM_001199058|C15orf38-AP3S2|100526783|C15orf38-AP3S2 readthrough##NM_182616|C15orf38|348110|chromosome 15 open reading frame 38	0.0	0.0	
chr19	11434978	11435079	reg1013092.p1	3.983	+	AF133424 NM_012466 BC029908	-28195	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-61890	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-84732	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	15272	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	21905	-	TSC_hg19_v1_chr19_+_11457194 NM_001080503 AK301653 AK316339 AK303641	22164	+	NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205##NM_001080503|CCDC159|126075|coiled-coil domain containing 159##AK301653|CCDC159|126075|coiled-coil domain containing 159##AK316339|CCDC159|126075|coiled-coil domain containing 159##AK303641|CCDC159|126075|coiled-coil domain containing 159	0.995294	0.0	denovo_WM_7:-84:0.707
chr19	20382454	20382568	reg1018088.p1	3.983	+	TSC_hg19_v1_chr19_+_20277998 BC027608 BC008936 BC117268 NM_052852	-104475	+	TSC_hg19_v1_chr19_+_20188813 NM_007138 AK298173 M61870 BC137211	-193674	+	AK027845 TSC_hg19_v1_chr19_-_20150315 AK096571 NM_033196	-232214	-	AK126842 BC022411 TSC_hg19_v1_chr19_-_20607776 BC036006 BC016785 BC017970	225257	-	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	366074	-	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	461851	-	BC027608|ZNF486|90649|zinc finger protein 486##BC008936|ZNF486|90649|zinc finger protein 486##BC117268|ZNF486|90649|zinc finger protein 486##NM_052852|ZNF486|90649|zinc finger protein 486##NM_007138|ZNF90|7643|zinc finger protein 90##AK298173|ZNF90|7643|zinc finger protein 90##M61870|ZNF90|7643|zinc finger protein 90##BC137211|ZNF90|7643|zinc finger protein 90##AK027845|ZNF682|91120|zinc finger protein 682##AK096571|ZNF682|91120|zinc finger protein 682##NM_033196|ZNF682|91120|zinc finger protein 682##BC022411|ZNF826P|664701|zinc finger protein 826, pseudogene##BC036006|ZNF826P|664701|zinc finger protein 826, pseudogene##BC016785|ZNF826P|664701|zinc finger protein 826, pseudogene##BC017970|ZNF826P|664701|zinc finger protein 826, pseudogene##BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626	1.974986	0.0	denovo_WM_7:5:0.807	denovo_WM_7:-21:0.558	denovo_WM_7:-22:0.360
chr19	5907385	5907451	reg1007438.p1	3.983	+	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	-2549	+	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	-3411	-	AJ539081 TSC_hg19_v1_chr19_-_5903795 AX775861 BC069045 AY726561 AK127692 AK291087	-3658	-	AK226026 NM_004058 NM_080590 BC080599 BC019065 BC101513 BC104766 X97966 BC011961	6923	+	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	70694	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	70733	-	NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AJ539081|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##BC069045|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AY726561|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK127692|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##AK226026|CAPS|828|calcyphosine##NM_004058|CAPS|828|calcyphosine##NM_080590|CAPS|828|calcyphosine##BC080599|CAPS|828|calcyphosine##BC019065|CAPS|828|calcyphosine##BC101513|CAPS|828|calcyphosine##BC104766|CAPS|828|calcyphosine##X97966|CAPS|828|calcyphosine##BC011961|CAPS|828|calcyphosine##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3	0.0	0.0	
chr7	75394543	75394723	reg1001559.p1	3.983	+	TSC_hg19_v1_chr7_-_75368305 AF486833 NM_001243198 NM_005338	-26323	-	AF365404 AB385224 TSC_hg19_v1_chr7_-_75368255 AK094866 AK304738 BC110545	-26393	-	BC101598 BC143635 BC087844 BC022886 BC007683 BC014421 BC029646 TSC_hg19_v1_chr7_-_75157432 BC046153	-237448	-	NM_006072 AY358893	24505	-	AJ223461 BC069072 BC069391 NM_002991 U85768 AB590965 CU686790	48396	-	AF226732 TSC_hg19_v1_chr7_+_75508369 NM_001040456 NM_001040457 BC069017 AK026590	113701	+	AF486833|HIP1|3092|huntingtin interacting protein 1##NM_001243198|HIP1|3092|huntingtin interacting protein 1##NM_005338|HIP1|3092|huntingtin interacting protein 1##AF365404|HIP1|3092|huntingtin interacting protein 1##AK094866|HIP1|3092|huntingtin interacting protein 1##AK304738|HIP1|3092|huntingtin interacting protein 1##BC110545|HIP1|3092|huntingtin interacting protein 1##BC101598|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC143635|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC087844|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC007683|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC014421|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##BC046153|PMS2P3|5387|postmeiotic segregation increased 2 pseudogene 3##NM_006072|CCL26|10344|chemokine (C-C motif) ligand 26##AY358893|CCL26|10344|chemokine (C-C motif) ligand 26##AJ223461|CCL24|6369|chemokine (C-C motif) ligand 24##BC069072|CCL24|6369|chemokine (C-C motif) ligand 24##BC069391|CCL24|6369|chemokine (C-C motif) ligand 24##NM_002991|CCL24|6369|chemokine (C-C motif) ligand 24##U85768|CCL24|6369|chemokine (C-C motif) ligand 24##AF226732|RHBDD2|57414|rhomboid domain containing 2##NM_001040456|RHBDD2|57414|rhomboid domain containing 2##NM_001040457|RHBDD2|57414|rhomboid domain containing 2##BC069017|RHBDD2|57414|rhomboid domain containing 2##AK026590|RHBDD2|57414|rhomboid domain containing 2	0.0	0.0	
chr9	131445287	131445372	reg1002758.p3	3.983	+	TSC_hg19_v1_chr9_-_131419024 BC011874 NM_052844	-26263	-	TSC_hg19_v1_chr9_-_131418938 BC001614	-26366	-	TSC_hg19_v1_chr9_+_131388703 AK309836 AK310696	-56586	+	NM_001122821 TSC_hg19_v1_chr9_+_131446071 AK300794	675	+	TSC_hg19_v1_chr9_+_131446108 D45198 AB464200 AM393022 JF729356	810	+	NM_001248000	2035	+	BC011874|WDR34|89891|WD repeat domain 34##NM_052844|WDR34|89891|WD repeat domain 34##BC001614|WDR34|89891|WD repeat domain 34##AK309836|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##AK310696|SPTAN1|6709|spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)##NM_001122821|SET|6418|SET nuclear oncogene##AK300794|SET|6418|SET nuclear oncogene##D45198|SET|6418|SET nuclear oncogene##AM393022|SET|6418|SET nuclear oncogene##JF729356|SET|6418|SET nuclear oncogene##NM_001248000|SET|6418|SET nuclear oncogene	0.996732	0.0	denovo_WM_7:-54:0.527	denovo_WM_7:-55:0.470
chr9	68302203	68302361	reg1009697.p2	3.983	+	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	-375466	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-1749007	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-1808086	-	TSC_hg19_v1_chr9_+_68726468 AK311167	424220	+	TSC_hg19_v1_chr9_+_69065493 AK311167	763256	+	NM_001085476	899921	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6	0.98112	0.0	
chr1	1509315	1509463	reg1009917.p2	3.982	+	NM_001114748 TSC_hg19_v1_chr1_-_1475787 BC147018 BC147020	-33604	-	TSC_hg19_v1_chr1_+_1447871 AK056099 NM_001170536	-61499	+	TSC_hg19_v1_chr1_+_1447544 AK001571 AK091144 AX746805 BC011814 BC033109 BC007803 BC063607 AF343078 GU189416	-61812	+	DQ892987 DQ896236 AF277178 TSC_hg19_v1_chr1_-_1509968 AK023110	565	-	AF161530 TSC_hg19_v1_chr1_-_1510015 AK297505 AK001809 AK310067 AK291324 AJ276409	637	-	TSC_hg19_v1_chr1_-_1510244 BC008070 BC018909	842	-	NM_001114748|TMEM240|339453|transmembrane protein 240##BC147018|TMEM240|339453|transmembrane protein 240##BC147020|TMEM240|339453|transmembrane protein 240##AK056099|ATAD3A|55210|ATPase family, AAA domain containing 3A##NM_001170536|ATAD3A|55210|ATPase family, AAA domain containing 3A##AK001571|ATAD3A|55210|ATPase family, AAA domain containing 3A##AK091144|ATAD3A|55210|ATPase family, AAA domain containing 3A##BC011814|ATAD3A|55210|ATPase family, AAA domain containing 3A##BC033109|ATAD3A|55210|ATPase family, AAA domain containing 3A##BC007803|ATAD3A|55210|ATPase family, AAA domain containing 3A##BC063607|ATAD3A|55210|ATPase family, AAA domain containing 3A##AF343078|ATAD3B|83858|ATPase family, AAA domain containing 3B##GU189416|ATAD3A|55210|ATPase family, AAA domain containing 3A##DQ892987|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##DQ896236|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AF277178|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AK023110|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AF161530|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AK297505|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AK001809|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AK310067|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##AJ276409|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##BC008070|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)##BC018909|SSU72|29101|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)	0.986152	0.0	denovo_WM_7:20:0.877
chr1	3593651	3593831	reg1007652.p1	3.982	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-24615	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-27125	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-52132	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	13517	+	AK310432 NM_001204192 AK302118	20874	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	70176	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	0.0	0.014464	
chr19	7452570	7452665	reg1010116.p2	3.982	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-158657	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-353066	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-382902	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	7390	+	TSC_hg19_v1_chr19_+_7460061 AB011093	7460	+	AK127045 NM_001130955	51956	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.0	0.0	
chr2	192542482	192542614	reg1002991.p1	3.982	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-432450	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-526241	-	TSC_hg19_v1_chr2_-_192015965 NM_003151	-526589	-	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	314	+	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	169190	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	169423	-	NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##NM_003151|STAT4|6775|signal transducer and activator of transcription 4##NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response	0.0	0.0	
chr3	121964460	121964590	reg1014321.p1	3.982	+	NM_001178065 U20760	-61345	+	NM_000388 U20759	-61996	+	NM_006889 NM_176892 U04343	-167803	+	NM_005213 AK291308 BC010379 X05978 CR456914	79549	+	BC019231 BC109378 TSC_hg19_v1_chr3_-_122102079 BC054051 BC062725 NM_001017928	137552	-	NM_014367 AK026030 BC010896 BC015060 AF201944 AF107495 AF250321 TSC_hg19_v1_chr3_+_122103076 AK293994 AF191020	138543	+	NM_001178065|CASR|846|calcium-sensing receptor##U20760|CASR|846|calcium-sensing receptor##NM_000388|CASR|846|calcium-sensing receptor##U20759|CASR|846|calcium-sensing receptor##NM_006889|CD86|942|CD86 molecule##NM_176892|CD86|942|CD86 molecule##U04343|CD86|942|CD86 molecule##NM_005213|CSTA|1475|cystatin A (stefin A)##AK291308|CSTA|1475|cystatin A (stefin A)##BC010379|CSTA|1475|cystatin A (stefin A)##X05978|CSTA|1475|cystatin A (stefin A)##CR456914|CSTA|1475|cystatin A (stefin A)##BC109378|CCDC58|131076|coiled-coil domain containing 58##BC054051|CCDC58|131076|coiled-coil domain containing 58##BC062725|CCDC58|131076|coiled-coil domain containing 58##NM_001017928|CCDC58|131076|coiled-coil domain containing 58##NM_014367|FAM162A|26355|family with sequence similarity 162, member A##AK026030|FAM162A|26355|family with sequence similarity 162, member A##BC010896|FAM162A|26355|family with sequence similarity 162, member A##BC015060|FAM162A|26355|family with sequence similarity 162, member A##AF201944|FAM162A|26355|family with sequence similarity 162, member A##AF107495|FAM162A|26355|family with sequence similarity 162, member A##AF250321|FAM162A|26355|family with sequence similarity 162, member A##AK293994|FAM162A|26355|family with sequence similarity 162, member A##AF191020|FAM162A|26355|family with sequence similarity 162, member A	0.903117	0.0	denovo_WM_7:-35:0.462	denovo_WM_7:-36:0.376
chr5	164986818	164986902	reg1013619.p2	3.982	+	TSC_hg19_v1_chr5_+_162932624 AK312365 NM_013283 AB073390 AL136664 BC093030 AK096178 BC066645 CU688168 AB528179 AM393097 AM393737 AF182814 AF113225	-2054217	+	DQ395260 DQ413183 NM_182796 AJ243721 AK291919 TSC_hg19_v1_chr5_+_162930290 BC005218 AY358695	-2056572	+	NM_001142556 NM_001142557 NM_012484 NM_012485 BC057235 AK313603 BC030505 TSC_hg19_v1_chr5_+_162887665 AK302975 BC006984 AK303616 BC070281 BC017793 U29343 AF032862 BC108904 BC108905 BC107869 AK290577	-2099265	+	HE578282 HE578283 NM_001122679	1724982	+	TSC_hg19_v1_chr5_+_167718649 NM_001161661 NM_001161662 NM_015238 AF506799 AK296323 AB527269	2731961	+	TSC_hg19_v1_chr5_+_167913482 NM_002887 AK314795 BC000528 BC014619 AK222797 S80343 AK302161 AB527674 BT007394 CU674256	2926614	+	AK312365|MAT2B|27430|methionine adenosyltransferase II, beta##NM_013283|MAT2B|27430|methionine adenosyltransferase II, beta##AB073390|MAT2B|27430|methionine adenosyltransferase II, beta##AL136664|MAT2B|27430|methionine adenosyltransferase II, beta##BC093030|MAT2B|27430|methionine adenosyltransferase II, beta##AK096178|MAT2B|27430|methionine adenosyltransferase II, beta##BC066645|MAT2B|27430|methionine adenosyltransferase II, beta##AM393097|MAT2B|27430|methionine adenosyltransferase II, beta##AM393737|MAT2B|27430|methionine adenosyltransferase II, beta##AF182814|MAT2B|27430|methionine adenosyltransferase II, beta##AF113225|MAT2B|27430|methionine adenosyltransferase II, beta##DQ395260|MAT2B|27430|methionine adenosyltransferase II, beta##DQ413183|MAT2B|27430|methionine adenosyltransferase II, beta##NM_182796|MAT2B|27430|methionine adenosyltransferase II, beta##AJ243721|MAT2B|27430|methionine adenosyltransferase II, beta##AK291919|MAT2B|27430|methionine adenosyltransferase II, beta##BC005218|MAT2B|27430|methionine adenosyltransferase II, beta##AY358695|MAT2B|27430|methionine adenosyltransferase II, beta##NM_001142556|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001142557|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012484|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_012485|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC057235|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK313603|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC030505|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK302975|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK303616|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC070281|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC017793|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##U29343|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AF032862|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108904|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC108905|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##BC107869|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##AK290577|HMMR|3161|hyaluronan-mediated motility receptor (RHAMM)##NM_001122679|ODZ2|57451|odz, odd Oz/ten-m homolog 2 (Drosophila)##NM_001161661|WWC1|23286|WW and C2 domain containing 1##NM_001161662|WWC1|23286|WW and C2 domain containing 1##NM_015238|WWC1|23286|WW and C2 domain containing 1##AF506799|WWC1|23286|WW and C2 domain containing 1##AK296323|WWC1|23286|WW and C2 domain containing 1##NM_002887|RARS|5917|arginyl-tRNA synthetase##AK314795|RARS|5917|arginyl-tRNA synthetase##BC000528|RARS|5917|arginyl-tRNA synthetase##BC014619|RARS|5917|arginyl-tRNA synthetase##AK222797|RARS|5917|arginyl-tRNA synthetase##S80343|RARS|5917|arginyl-tRNA synthetase##AK302161|RARS|5917|arginyl-tRNA synthetase##BT007394|RARS|5917|arginyl-tRNA synthetase	0.164468	0.0	
chr7	117413871	117414006	reg1018463.p1	3.982	+	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	-293900	+	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	-346393	-	BC078170 AK056742 NM_003391 X07876	-450603	-	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	99543	-	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	99605	-	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	410233	+	M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit	0.0	0.0	
chr9	27489683	27489770	reg1015902.p1	3.982	+	BC137351 BC137352 BC144602 BC014307 AJ278482 NM_001161585 NM_020641	-192605	-	AK294887 NM_000459	-380584	+	BC126156 BC136298 AK222987 AK024955 BC056252 NM_022901	-484057	-	AF146759 AF315688 NM_020124 AY358855 AB463795	34596	+	TSC_hg19_v1_chr9_-_27529809 AL832572 BC033027 AK023266 NM_024761	39924	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	83745	-	BC137351|C9orf11|54586|chromosome 9 open reading frame 11##BC137352|C9orf11|54586|chromosome 9 open reading frame 11##BC144602|C9orf11|54586|chromosome 9 open reading frame 11##BC014307|C9orf11|54586|chromosome 9 open reading frame 11##AJ278482|C9orf11|54586|chromosome 9 open reading frame 11##NM_001161585|C9orf11|54586|chromosome 9 open reading frame 11##NM_020641|C9orf11|54586|chromosome 9 open reading frame 11##AK294887|TEK|7010|TEK tyrosine kinase, endothelial##NM_000459|TEK|7010|TEK tyrosine kinase, endothelial##BC126156|LRRC19|64922|leucine rich repeat containing 19##BC136298|LRRC19|64922|leucine rich repeat containing 19##AK222987|LRRC19|64922|leucine rich repeat containing 19##AK024955|LRRC19|64922|leucine rich repeat containing 19##BC056252|LRRC19|64922|leucine rich repeat containing 19##NM_022901|LRRC19|64922|leucine rich repeat containing 19##AF146759|IFNK|56832|interferon, kappa##AF315688|IFNK|56832|interferon, kappa##NM_020124|IFNK|56832|interferon, kappa##AY358855|IFNK|56832|interferon, kappa##AL832572|MOB3B|79817|MOB kinase activator 3B##BC033027|MOB3B|79817|MOB kinase activator 3B##AK023266|MOB3B|79817|MOB kinase activator 3B##NM_024761|MOB3B|79817|MOB kinase activator 3B##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72	0.998025	0.012798	denovo_WM_7:18:0.985
chr1	114416952	114417132	reg1011587.p2	3.981	+	AB587398 JN084012 AF001846 AF001847 GU479452 AF150732 AF077031 BC071670 AK303124 TSC_hg19_v1_chr1_-_114414332 AK310570 AK310698 BC017785 NM_001193431 NM_012411 NM_015967	-2733	-	TSC_hg19_v1_chr1_-_114354906 AK002082 BC026155 NM_018364 AK292552	-62041	-	TSC_hg19_v1_chr1_-_114354898 CU693140 CR627402	-62161	-	AY265861 AY265862 AY265863 AY265864 BC127719 BC127720 TSC_hg19_v1_chr1_-_114430038 BC132904 BC132906 CR749373	12996	-	NM_001010922 TSC_hg19_v1_chr1_-_114430204 AK289439	13144	-	AB385090 CU680806 BC014146 AK093740 AX748284 AB209817 TSC_hg19_v1_chr1_-_114447534 AK298037 AK300204	30419	-	JN084012|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF001846|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##GU479452|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF150732|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AF077031|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC071670|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK303124|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310570|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK310698|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##BC017785|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_001193431|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_012411|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##NM_015967|PTPN22|26191|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)##AK002082|RSBN1|54665|round spermatid basic protein 1##BC026155|RSBN1|54665|round spermatid basic protein 1##NM_018364|RSBN1|54665|round spermatid basic protein 1##AK292552|RSBN1|54665|round spermatid basic protein 1##CR627402|RSBN1|54665|round spermatid basic protein 1##AY265861|BCL2L15|440603|BCL2-like 15##AY265862|BCL2L15|440603|BCL2-like 15##AY265863|BCL2L15|440603|BCL2-like 15##AY265864|BCL2L15|440603|BCL2-like 15##BC127719|BCL2L15|440603|BCL2-like 15##BC127720|BCL2L15|440603|BCL2-like 15##BC132904|BCL2L15|440603|BCL2-like 15##BC132906|BCL2L15|440603|BCL2-like 15##CR749373|BCL2L15|440603|BCL2-like 15##NM_001010922|BCL2L15|440603|BCL2-like 15##AK289439|BCL2L15|440603|BCL2-like 15##BC014146|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AK093740|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AB209817|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AK298037|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit##AK300204|AP4B1|10717|adaptor-related protein complex 4, beta 1 subunit	0.74707	0.0	denovo_WM_7:-13:0.644
chr12	6472421	6472533	reg1012024.p2	3.981	+	M58286 TSC_hg19_v1_chr12_-_6451171 M33294 AK056611 AK298729 AK304517 M63121 AK308061 AK291088 BC010140 AK315509 NM_001065	-21257	-	AB590201 EU176385 EU176726 CU679633 EU927389 M60275 TSC_hg19_v1_chr12_-_6451145	-21415	-	TSC_hg19_v1_chr12_-_6442970 AY182755	-29483	-	AK172792 NM_001159576 TSC_hg19_v1_chr12_-_6484414	11925	-	TSC_hg19_v1_chr12_-_6484617 AY365119 X76180	12158	-	NM_001038	12427	-	M58286|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##M33294|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK056611|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK298729|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK304517|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##M63121|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK308061|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK291088|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##BC010140|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK315509|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##NM_001065|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##EU176385|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##EU176726|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##EU927389|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##M60275|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AY182755|TNFRSF1A|7132|tumor necrosis factor receptor superfamily, member 1A##AK172792|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001159576|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##AY365119|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##X76180|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha##NM_001038|SCNN1A|6337|sodium channel, nonvoltage-gated 1 alpha	0.973211	0.0	denovo_WM_7:-10:0.973
chr2	144087757	144087837	reg1015540.p2	3.981	+	TSC_hg19_v1_chr2_+_143886987 AK303490 BC016701 BC038976	-200806	+	NM_018460 BC029346 TSC_hg19_v1_chr2_+_143886947 AK308219 AF212222 AF217507 AF217522 AY219338 AK226014	-200867	+	BC000879 TSC_hg19_v1_chr2_+_143635232 AK292095 AK315343 AK290900	-452557	+	NM_024659	907108	-	AY281366 NM_001006636	964262	-	BC017741 AK291357 TSC_hg19_v1_chr2_-_145090037 BC061699	1002235	-	AK303490|ARHGAP15|55843|Rho GTPase activating protein 15##BC016701|ARHGAP15|55843|Rho GTPase activating protein 15##BC038976|ARHGAP15|55843|Rho GTPase activating protein 15##NM_018460|ARHGAP15|55843|Rho GTPase activating protein 15##AK308219|ARHGAP15|55843|Rho GTPase activating protein 15##AF212222|ARHGAP15|55843|Rho GTPase activating protein 15##AF217507|ARHGAP15|55843|Rho GTPase activating protein 15##AF217522|ARHGAP15|55843|Rho GTPase activating protein 15##AY219338|ARHGAP15|55843|Rho GTPase activating protein 15##AK226014|ARHGAP15|55843|Rho GTPase activating protein 15##BC000879|KYNU|8942|kynureninase##AK292095|KYNU|8942|kynureninase##AK315343|KYNU|8942|kynureninase##AK290900|KYNU|8942|kynureninase##NM_024659|GTDC1|79712|glycosyltransferase-like domain containing 1##AY281366|GTDC1|79712|glycosyltransferase-like domain containing 1##NM_001006636|GTDC1|79712|glycosyltransferase-like domain containing 1##BC017741|GTDC1|79712|glycosyltransferase-like domain containing 1##AK291357|GTDC1|79712|glycosyltransferase-like domain containing 1##BC061699|GTDC1|79712|glycosyltransferase-like domain containing 1	0.827883	0.0	denovo_WM_7:-103:0.219
chr3	183297867	183297995	reg1012619.p1	3.981	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	-24479	-	TSC_hg19_v1_chr3_+_183165436 AK057000	-132501	+	NM_015078 BC064632 AK124500 AK310962	-151992	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	55469	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	117691	+	TSC_hg19_v1_chr3_-_183543366 BC006434 AK022810 NM_024871	245438	-	AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2##BC006434|MAP6D1|79929|MAP6 domain containing 1##AK022810|MAP6D1|79929|MAP6 domain containing 1##NM_024871|MAP6D1|79929|MAP6 domain containing 1	1.320662	0.0	denovo_WM_7:-46:0.334	denovo_WM_7:-64:0.346
chr5	148910540	148910669	reg1017197.p1	3.981	+	TSC_hg19_v1_chr5_+_148786440 AK126481 CR933654 BX640700	-124122	+	AB590699 CR457192 BC113925 BC113946 AF152098 AF184969 AF218727 AY358931 AF110385 AF212311 NM_014443 TSC_hg19_v1_chr5_-_148758856	-151782	-	TSC_hg19_v1_chr5_+_148737613 AF451985 BC000014	-172981	+	AF218004 TSC_hg19_v1_chr5_-_148930935 AK303794 BC021971 BC025371 BC007246	20320	-	TSC_hg19_v1_chr5_-_148930950 AK294942	20362	-	TSC_hg19_v1_chr5_-_148931006 NM_001025105 NM_001892	20402	-	AK126481|MIR143HG|728264|MIR143 host gene (non-protein coding)##CR933654|MIR143HG|728264|MIR143 host gene (non-protein coding)##CR457192|IL17B|27190|interleukin 17B##BC113925|IL17B|27190|interleukin 17B##BC113946|IL17B|27190|interleukin 17B##AF152098|IL17B|27190|interleukin 17B##AF184969|IL17B|27190|interleukin 17B##AF218727|IL17B|27190|interleukin 17B##AY358931|IL17B|27190|interleukin 17B##AF110385|IL17B|27190|interleukin 17B##AF212311|IL17B|27190|interleukin 17B##NM_014443|IL17B|27190|interleukin 17B##AF451985|PCYOX1L|78991|prenylcysteine oxidase 1 like##BC000014|PCYOX1L|78991|prenylcysteine oxidase 1 like##AF218004|CSNK1A1|1452|casein kinase 1, alpha 1##AK303794|CSNK1A1|1452|casein kinase 1, alpha 1##BC021971|CSNK1A1|1452|casein kinase 1, alpha 1##BC025371|CSNK1A1|1452|casein kinase 1, alpha 1##BC007246|CSNK1A1|1452|casein kinase 1, alpha 1##AK294942|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001025105|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001892|CSNK1A1|1452|casein kinase 1, alpha 1	1.987277	0.0	denovo_WM_7:-46:0.889	denovo_WM_7:-67:0.906
chr7	4691136	4691295	reg1014075.p2	3.981	+	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	-1350216	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	-1607753	-	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-1807407	-	TSC_hg19_v1_chr7_+_4721925 NM_001037165	30623	+	TSC_hg19_v1_chr7_+_4722091 AX721089 AK302243 AK122663	31036	+	TSC_hg19_v1_chr7_+_4815264 NM_014855 BC037399	124046	+	AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_001037165|FOXK1|221937|forkhead box K1##AK302243|FOXK1|221937|forkhead box K1##AK122663|FOXK1|221937|forkhead box K1##NM_014855|KIAA0415|9907|KIAA0415##BC037399|KIAA0415|9907|KIAA0415	0.99174	0.0	denovo_WM_7:0:0.331	denovo_WM_7:-1:0.331	denovo_WM_7:-2:0.331
chr12	123917287	123917467	reg1003559.p1	3.980	+	AY064546 TSC_hg19_v1_chr12_+_123873657	-43748	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	-48654	+	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	-48722	+	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	3635	-	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	3864	-	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	25326	+	AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)	0.0	0.0	
chr1	236001453	236001556	reg1014045.p2	3.980	+	BC022485 NM_001098721 NM_004485	-187451	-	TSC_hg19_v1_chr1_-_235813301 AK311781 NM_001098722	-188322	-	BC029564 NM_152490 TSC_hg19_v1_chr1_-_235667782	-333723	-	TSC_hg19_v1_chr1_-_236030193 BC020793	28679	-	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	28740	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	226873	-	BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AK311781|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098722|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##BC029564|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2##NM_152490|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2##NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##AB209448|NID1|4811|nidogen 1	0.0	0.0	
chr12	9595923	9596033	reg1019956.p1	3.980	+	TSC_hg19_v1_chr12_+_9436619 AK123583 AK309820	-159353	+	BC111756 AK313639 NM_002864 X54380	-235016	-	TSC_hg19_v1_chr12_-_9268536 NM_000014	-327420	-	TSC_hg19_v1_chr12_-_9600810 BC035635 BC128040 BC111733	4820	-	BC027885 BC113997 BC114516 U11276 NM_002258 AK292022	164518	-	TSC_hg19_v1_chr12_+_9800760 AK096274	204918	+	AK309820|LOC642846|642846|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like##BC111756|PZP|5858|pregnancy-zone protein##AK313639|PZP|5858|pregnancy-zone protein##NM_002864|PZP|5858|pregnancy-zone protein##X54380|PZP|5858|pregnancy-zone protein##NM_000014|A2M|2|alpha-2-macroglobulin##BC035635|DDX12P|440081|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene##BC111733|DDX11|1663|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11##BC027885|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC113997|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##BC114516|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##U11276|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##NM_002258|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK292022|KLRB1|3820|killer cell lectin-like receptor subfamily B, member 1##AK096274|LOC374443|374443|CLR pseudogene	0.0	0.0	
chr14	51750182	51750281	reg1011723.p1	3.980	+	NM_030755 AB048246 TSC_hg19_v1_chr14_+_51706980 AK302416 BC036460 BC016769 BC050366 AK075395 BC032834 AK303134 AL080080 BC056874 AY358640 AK312905 DQ891674 DQ894860 CU690352	-43282	+	NM_015163 NM_052978	-187810	-	TSC_hg19_v1_chr14_-_51562045 AK055388	-188178	-	AL833158 NM_001042481	205623	+	TSC_hg19_v1_chr14_+_52118627 BX161430 NM_152330 BC020521 AK315764 AK055545 BX647863	368399	+	NM_001243773 NM_001243774 NM_053064 AK092371	576845	+	NM_030755|TMX1|81542|thioredoxin-related transmembrane protein 1##AB048246|TMX1|81542|thioredoxin-related transmembrane protein 1##BC036460|TMX1|81542|thioredoxin-related transmembrane protein 1##BC016769|TMX1|81542|thioredoxin-related transmembrane protein 1##BC050366|TMX1|81542|thioredoxin-related transmembrane protein 1##AK075395|TMX1|81542|thioredoxin-related transmembrane protein 1##BC032834|TMX1|81542|thioredoxin-related transmembrane protein 1##AK303134|TMX1|81542|thioredoxin-related transmembrane protein 1##AL080080|TMX1|81542|thioredoxin-related transmembrane protein 1##BC056874|TMX1|81542|thioredoxin-related transmembrane protein 1##AY358640|TMX1|81542|thioredoxin-related transmembrane protein 1##AK312905|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ891674|TMX1|81542|thioredoxin-related transmembrane protein 1##DQ894860|TMX1|81542|thioredoxin-related transmembrane protein 1##NM_015163|TRIM9|114088|tripartite motif containing 9##NM_052978|TRIM9|114088|tripartite motif containing 9##AK055388|TRIM9|114088|tripartite motif containing 9##AL833158|FRMD6|122786|FERM domain containing 6##NM_001042481|FRMD6|122786|FERM domain containing 6##BX161430|FRMD6|122786|FERM domain containing 6##NM_152330|FRMD6|122786|FERM domain containing 6##BC020521|FRMD6|122786|FERM domain containing 6##AK315764|FRMD6|122786|FERM domain containing 6##AK055545|FRMD6|122786|FERM domain containing 6##BX647863|FRMD6|122786|FERM domain containing 6##NM_001243773|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##NM_001243774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##NM_053064|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK092371|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2	0.015896	0.478266	CTCF.p2:-20:0.311
chr2	24047672	24047779	reg1007145.p1	3.980	+	NM_052920	-439428	+	TSC_hg19_v1_chr2_-_21266940 AK290844 NM_000384 X04506 X04714	-2780796	-	TSC_hg19_v1_chr2_-_21266896 J02610 M12681	-2780826	-	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	102221	-	TSC_hg19_v1_chr2_+_24150144 BC037901	102432	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	115646	+	NM_052920|KLHL29|114818|kelch-like 29 (Drosophila)##AK290844|APOB|338|apolipoprotein B (including Ag(x) antigen)##NM_000384|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04506|APOB|338|apolipoprotein B (including Ag(x) antigen)##X04714|APOB|338|apolipoprotein B (including Ag(x) antigen)##J02610|APOB|338|apolipoprotein B (including Ag(x) antigen)##M12681|APOB|338|apolipoprotein B (including Ag(x) antigen)##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037901|UBXN2A|165324|UBX domain protein 2A##BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A	0.471288	0.937821	CTCF.p2:19:0.938
chr3	135913608	135913788	reg1002778.p2	3.980	+	AK302491 NM_001145417	-406	-	NM_181897 AK316258 L12146	-172080	+	BC029409 TSC_hg19_v1_chr3_+_135684606 L07590	-229078	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	983	-	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	55466	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	55504	+	AK302491|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_001145417|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC029409|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L07590|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide	0.0	0.0	
chr4	22480622	22480754	reg1005670.p2	3.980	+	NM_147182 TSC_hg19_v1_chr4_-_21950396	-530304	-	BX648990 DQ148490 NM_001035003	-781371	-	DQ148491 NM_001035004	-934410	-	AF064846 TSC_hg19_v1_chr4_-_22517635 AY358306 NM_145290 BC035645	36866	-	BC029362 NM_001128432 NM_020973 BC070188 BC109377 AK313189 AB017913 AF323990 AK222963 AK292746 BC101829 BC136264 CU688634 AF317840 AJ278964	213904	+	AF159714 AF186379 AB061325 AK296591 AK309261 BC029800 AF106698 NM_013261	1410965	-	NM_147182|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4##AY358306|GPR125|166647|G protein-coupled receptor 125##NM_145290|GPR125|166647|G protein-coupled receptor 125##BC035645|GPR125|166647|G protein-coupled receptor 125##BC029362|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_001128432|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##NM_020973|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC070188|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC109377|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK313189|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AB017913|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF323990|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK222963|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AK292746|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC101829|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##BC136264|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF317840|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AJ278964|GBA3|57733|glucosidase, beta, acid 3 (cytosolic)##AF159714|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF186379|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AB061325|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK296591|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AK309261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##BC029800|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##AF106698|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha##NM_013261|PPARGC1A|10891|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha	0.108028	0.0	
chr5	106483685	106483809	reg1014980.p1	3.980	+	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-3585266	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-3889290	+	BC024591 NM_015216 AB463068	-4018473	+	AK308672 NM_001962 U26403	522843	-	TSC_hg19_v1_chr5_-_107717106 AK126722	1233383	-	BC063316 NM_001163315	1234051	-	AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##BC024591|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##NM_015216|PPIP5K2|23262|diphosphoinositol pentakisphosphate kinase 2##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17	0.730676	0.0	denovo_WM_7:42:0.716
chr6	154598510	154598685	reg1017957.p1	3.980	+	EU360599 EU362990 NM_001145287	-190956	+	L29301 NM_000914 NM_001008503 NM_001008504 NM_001008505 NM_001145282 NM_001145283 NM_001145284 NM_001145285 NM_001145286 L25119 U12569 AB590577 AK309655 AK313901 AY225404 AY364230 AY036622 AY036623 AY309001 AY309005 AY309006 AY309007 AY309008 AY309009 BC074927 AY521028	-238037	+	DQ680044 NM_001145279 NM_001145280 EU340241 EU340242 EU340243 NM_001145281	-266965	+	BX647254 NM_001130699	52617	-	AK289917 AJ310566 NM_001130700 NM_015553 TSC_hg19_v1_chr6_-_154677938	79318	-	TSC_hg19_v1_chr6_-_154831690 BC060761	233074	-	EU360599|OPRM1|4988|opioid receptor, mu 1##EU362990|OPRM1|4988|opioid receptor, mu 1##NM_001145287|OPRM1|4988|opioid receptor, mu 1##L29301|OPRM1|4988|opioid receptor, mu 1##NM_000914|OPRM1|4988|opioid receptor, mu 1##NM_001008503|OPRM1|4988|opioid receptor, mu 1##NM_001008504|OPRM1|4988|opioid receptor, mu 1##NM_001008505|OPRM1|4988|opioid receptor, mu 1##NM_001145282|OPRM1|4988|opioid receptor, mu 1##NM_001145283|OPRM1|4988|opioid receptor, mu 1##NM_001145284|OPRM1|4988|opioid receptor, mu 1##NM_001145285|OPRM1|4988|opioid receptor, mu 1##NM_001145286|OPRM1|4988|opioid receptor, mu 1##L25119|OPRM1|4988|opioid receptor, mu 1##U12569|OPRM1|4988|opioid receptor, mu 1##AK313901|OPRM1|4988|opioid receptor, mu 1##AY225404|OPRM1|4988|opioid receptor, mu 1##AY364230|OPRM1|4988|opioid receptor, mu 1##AY036622|OPRM1|4988|opioid receptor, mu 1##AY036623|OPRM1|4988|opioid receptor, mu 1##AY309001|OPRM1|4988|opioid receptor, mu 1##AY309005|OPRM1|4988|opioid receptor, mu 1##AY309006|OPRM1|4988|opioid receptor, mu 1##AY309007|OPRM1|4988|opioid receptor, mu 1##AY309008|OPRM1|4988|opioid receptor, mu 1##AY309009|OPRM1|4988|opioid receptor, mu 1##BC074927|OPRM1|4988|opioid receptor, mu 1##AY521028|OPRM1|4988|opioid receptor, mu 1##DQ680044|OPRM1|4988|opioid receptor, mu 1##NM_001145279|OPRM1|4988|opioid receptor, mu 1##NM_001145280|OPRM1|4988|opioid receptor, mu 1##EU340241|OPRM1|4988|opioid receptor, mu 1##EU340242|OPRM1|4988|opioid receptor, mu 1##EU340243|OPRM1|4988|opioid receptor, mu 1##NM_001145281|OPRM1|4988|opioid receptor, mu 1##BX647254|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_001130699|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##AK289917|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##AJ310566|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_001130700|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##NM_015553|IPCEF1|26034|interaction protein for cytohesin exchange factors 1##BC060761|CNKSR3|154043|CNKSR family member 3	0.0	0.0	
chr7	142491262	142491380	reg1014788.p1	3.980	+	NM_002769 AK293375 BC128225 BC128226 CR627200 AK312199 BC103998 M22612 AB528723 DQ778083 DQ846873	-33995	+	NM_001190487	-117191	+	AY358487 BC035384 AK122940 NM_001001317	-533460	-	M12426 TSC_hg19_v1_chr7_+_142495248	3874	+	TSC_hg19_v1_chr7_+_142552837 NM_004445 D83492 BC015495 BC051028 BC056159	61404	+	TSC_hg19_v1_chr7_+_142560518 BC110606 BC110607	69194	+	NM_002769|PRSS1|5644|protease, serine, 1 (trypsin 1)##AK293375|PRSS1|5644|protease, serine, 1 (trypsin 1)##BC128226|PRSS1|5644|protease, serine, 1 (trypsin 1)##CR627200|PRSS1|5644|protease, serine, 1 (trypsin 1)##AK312199|PRSS1|5644|protease, serine, 1 (trypsin 1)##BC103998|PRSS2|5645|protease, serine, 2 (trypsin 2)##M22612|PRSS1|5644|protease, serine, 1 (trypsin 1)##DQ778083|PRSS1|5644|protease, serine, 1 (trypsin 1)##DQ846873|PRSS2|5645|protease, serine, 2 (trypsin 2)##NM_001190487|MTRNR2L6|100463482|MT-RNR2-like 6##AY358487|PRSS58|136541|protease, serine, 58##BC035384|PRSS58|136541|protease, serine, 58##AK122940|PRSS58|136541|protease, serine, 58##NM_001001317|PRSS58|136541|protease, serine, 58##NM_004445|EPHB6|2051|EPH receptor B6##D83492|EPHB6|2051|EPH receptor B6##BC015495|EPHB6|2051|EPH receptor B6##BC051028|EPHB6|2051|EPH receptor B6##BC056159|EPHB6|2051|EPH receptor B6##BC110606|EPHB6|2051|EPH receptor B6##BC110607|EPHB6|2051|EPH receptor B6	0.015211	0.908015	CTCF.p2:-7:0.882
chr1	112142535	112142651	reg1013420.p1	3.979	+	BC041707 BC064411 NM_001081976	-36014	-	NM_000677 NM_020683	-95851	-	TSC_hg19_v1_chr1_+_112016601 BC017973 NM_174896	-125995	+	TSC_hg19_v1_chr1_+_112162449 NM_001010935 NM_002884 BC014086	19874	+	AB528568 CU689180 AL137198 AK295012 BC031558 TSC_hg19_v1_chr1_-_112282012 AK055667 NM_019099	139362	-	TSC_hg19_v1_chr1_+_112298189 NM_007204 BC034953 AF171063	155626	+	BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##BC017973|C1orf162|128346|chromosome 1 open reading frame 162##NM_174896|C1orf162|128346|chromosome 1 open reading frame 162##NM_001010935|RAP1A|5906|RAP1A, member of RAS oncogene family##NM_002884|RAP1A|5906|RAP1A, member of RAS oncogene family##BC014086|RAP1A|5906|RAP1A, member of RAS oncogene family##AL137198|FAM212B|55924|family with sequence similarity 212, member B##AK295012|FAM212B|55924|family with sequence similarity 212, member B##BC031558|FAM212B|55924|family with sequence similarity 212, member B##AK055667|FAM212B|55924|family with sequence similarity 212, member B##NM_019099|FAM212B|55924|family with sequence similarity 212, member B##NM_007204|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC034953|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF171063|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	0.0	0.0	
chr12	64208389	64208512	reg1013260.p1	3.979	+	BX647105 BX647419 TSC_hg19_v1_chr12_+_64173925	-34515	+	TSC_hg19_v1_chr12_+_64173629 AB015633 NM_014254 BC013152 BC002596 AK289382 CU680528 DQ891077 DQ894259	-34783	+	BC125215 BC125216 TSC_hg19_v1_chr12_-_64062283 AY358792 AL833344 AK310102 AK057511 BC068442 NM_173812	-146154	-	TSC_hg19_v1_chr12_+_64237847 BC065032	29276	+	TSC_hg19_v1_chr12_+_64238511 BC053903 NM_020762 BC029919	30096	+	BC071634 AK057111 BC036246 AK129933 NM_152440	407603	-	BX647105|TMEM5|10329|transmembrane protein 5##BX647419|TMEM5|10329|transmembrane protein 5##AB015633|TMEM5|10329|transmembrane protein 5##NM_014254|TMEM5|10329|transmembrane protein 5##BC013152|TMEM5|10329|transmembrane protein 5##BC002596|TMEM5|10329|transmembrane protein 5##AK289382|TMEM5|10329|transmembrane protein 5##DQ891077|TMEM5|10329|transmembrane protein 5##DQ894259|TMEM5|10329|transmembrane protein 5##BC125215|DPY19L2|283417|dpy-19-like 2 (C. elegans)##BC125216|DPY19L2|283417|dpy-19-like 2 (C. elegans)##AY358792|DPY19L2|283417|dpy-19-like 2 (C. elegans)##AL833344|DPY19L2|283417|dpy-19-like 2 (C. elegans)##AK310102|DPY19L2|283417|dpy-19-like 2 (C. elegans)##AK057511|DPY19L2|283417|dpy-19-like 2 (C. elegans)##BC068442|DPY19L2|283417|dpy-19-like 2 (C. elegans)##NM_173812|DPY19L2|283417|dpy-19-like 2 (C. elegans)##BC053903|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##NM_020762|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BC029919|SRGAP1|57522|SLIT-ROBO Rho GTPase activating protein 1##BC071634|C12orf66|144577|chromosome 12 open reading frame 66##AK057111|C12orf66|144577|chromosome 12 open reading frame 66##BC036246|C12orf66|144577|chromosome 12 open reading frame 66##AK129933|C12orf66|144577|chromosome 12 open reading frame 66##NM_152440|C12orf66|144577|chromosome 12 open reading frame 66	0.99673	0.0	denovo_WM_7:8:0.470	denovo_WM_7:9:0.527
chr17	64400728	64400853	reg1017837.p1	3.979	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-101863	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-102040	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-175265	-	AK290171 TSC_hg19_v1_chr17_+_64831234	430445	+	BC101633 NM_145811 BC101607 AF361351 AF458898	472630	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	560099	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	1.297202	0.0	denovo_WM_7:76:0.240	denovo_WM_7:91:0.238
chr19	45446981	45447158	reg1012525.p1	3.979	+	AK126257 NM_001646 BC020723 EF371378	-1555	+	TSC_hg19_v1_chr19_+_45418068 BC009698 AB528369 AM392727 GQ129384 GQ129385 BT007142 CR456907	-28964	+	NM_001645 TSC_hg19_v1_chr19_+_45417961 AK312036	-29125	+	TSC_hg19_v1_chr19_+_45449242 NM_000483	2166	+	AF113884 TSC_hg19_v1_chr19_+_45452536	5414	+	NM_001294 BC004865 TSC_hg19_v1_chr19_+_45458636 AK074935 AK223553 AF037339 AK075262	11551	+	AK126257|APOC4-APOC2|100533990|APOC4-APOC2 readthrough##NM_001646|APOC4|346|apolipoprotein C-IV##BC020723|APOC4|346|apolipoprotein C-IV##EF371378|APOC4|346|apolipoprotein C-IV##BC009698|APOC1|341|apolipoprotein C-I##AM392727|APOC1|341|apolipoprotein C-I##GQ129384|APOC1|341|apolipoprotein C-I##GQ129385|APOC1|341|apolipoprotein C-I##BT007142|APOC1|341|apolipoprotein C-I##CR456907|APOC1|341|apolipoprotein C-I##NM_001645|APOC1|341|apolipoprotein C-I##AK312036|APOC1|341|apolipoprotein C-I##NM_000483|APOC2|344|apolipoprotein C-II##AF113884|APOC2|344|apolipoprotein C-II##NM_001294|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##BC004865|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK074935|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK223553|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AF037339|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1##AK075262|CLPTM1|1209|cleft lip and palate associated transmembrane protein 1	0.999362	0.0	denovo_WM_7:-78:0.227	denovo_WM_7:-79:0.740
chr3	38392586	38392668	reg1009219.p1	3.979	+	TSC_hg19_v1_chr3_+_38388298 AK025728 AK314386 BC030231 BC137076 BC137080 AK293325	-4286	+	TSC_hg19_v1_chr3_+_38388288 BC052984	-4337	+	TSC_hg19_v1_chr3_+_38388285 AB015046 BC039712 NM_005108	-4374	+	TSC_hg19_v1_chr3_+_38495787 NM_001106 BC096243 BC096244 BC096245 BC099642 X77533	103166	+	TSC_hg19_v1_chr3_+_38537830 AK290107 NM_001145464 NM_005107 AB020523 BC104213 BC104212 AK301067 AK308814	145168	+	BC015820 TSC_hg19_v1_chr3_+_38537851 BC065368 AK023235 AK289602	145223	+	AK025728|XYLB|9942|xylulokinase homolog (H. influenzae)##AK314386|XYLB|9942|xylulokinase homolog (H. influenzae)##BC030231|XYLB|9942|xylulokinase homolog (H. influenzae)##BC137076|XYLB|9942|xylulokinase homolog (H. influenzae)##BC137080|XYLB|9942|xylulokinase homolog (H. influenzae)##AK293325|XYLB|9942|xylulokinase homolog (H. influenzae)##BC052984|XYLB|9942|xylulokinase homolog (H. influenzae)##AB015046|XYLB|9942|xylulokinase homolog (H. influenzae)##BC039712|XYLB|9942|xylulokinase homolog (H. influenzae)##NM_005108|XYLB|9942|xylulokinase homolog (H. influenzae)##NM_001106|ACVR2B|93|activin A receptor, type IIB##BC096243|ACVR2B|93|activin A receptor, type IIB##BC096244|ACVR2B|93|activin A receptor, type IIB##BC096245|ACVR2B|93|activin A receptor, type IIB##BC099642|ACVR2B|93|activin A receptor, type IIB##X77533|ACVR2B|93|activin A receptor, type IIB##AK290107|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##NM_001145464|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##NM_005107|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AB020523|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC104213|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC104212|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK301067|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK308814|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC015820|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##BC065368|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK023235|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like##AK289602|EXOG|9941|endo/exonuclease (5'-3'), endonuclease G-like	1.946034	0.0	denovo_WM_7:43:0.846	denovo_WM_7:58:0.834
chr4	39031502	39031682	reg1009459.p2	3.979	+	TSC_hg19_v1_chr4_+_38869390 NM_138389 AK304050 AK296859 AK292831 BC040452	-162201	+	TSC_hg19_v1_chr4_-_38858439 AK313618 NM_006068	-173164	-	TSC_hg19_v1_chr4_-_38806422 AL050262 NM_003263 AK292982	-225173	-	BC030803 BC060512 AK026888 NM_024943	2418	-	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	14846	+	AK289785 NM_015990 NM_199039	32259	+	NM_138389|FAM114A1|92689|family with sequence similarity 114, member A1##AK304050|FAM114A1|92689|family with sequence similarity 114, member A1##AK296859|FAM114A1|92689|family with sequence similarity 114, member A1##AK292831|FAM114A1|92689|family with sequence similarity 114, member A1##BC040452|FAM114A1|92689|family with sequence similarity 114, member A1##AK313618|TLR6|10333|toll-like receptor 6##NM_006068|TLR6|10333|toll-like receptor 6##AL050262|TLR1|7096|toll-like receptor 1##NM_003263|TLR1|7096|toll-like receptor 1##AK292982|TLR1|7096|toll-like receptor 1##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)	0.0	0.0	
chr1	223311177	223311321	reg1013933.p1	3.978	+	TSC_hg19_v1_chr1_+_222988422 NM_032890	-322858	+	AK125494 NM_207468	-400692	+	TSC_hg19_v1_chr1_+_222886732 AK315930 AK293974	-424516	+	TSC_hg19_v1_chr1_-_223316591 NM_003268	5357	-	AK096265 AK000914 BC004888 AK296923 EF560748 AK295553 AY358495 NM_001037175 NM_017982	226222	-	NM_152610 AK093047 AX747883 BC031066 BC030026 AB464493 CU688810	255516	+	NM_032890|DISP1|84976|dispatched homolog 1 (Drosophila)##AK125494|FAM177B|400823|family with sequence similarity 177, member B##NM_207468|FAM177B|400823|family with sequence similarity 177, member B##AK315930|BROX|148362|BRO1 domain and CAAX motif containing##AK293974|BROX|148362|BRO1 domain and CAAX motif containing##NM_003268|TLR5|7100|toll-like receptor 5##AK096265|SUSD4|55061|sushi domain containing 4##AK000914|SUSD4|55061|sushi domain containing 4##BC004888|SUSD4|55061|sushi domain containing 4##AK296923|SUSD4|55061|sushi domain containing 4##EF560748|SUSD4|55061|sushi domain containing 4##AK295553|SUSD4|55061|sushi domain containing 4##AY358495|SUSD4|55061|sushi domain containing 4##NM_001037175|SUSD4|55061|sushi domain containing 4##NM_017982|SUSD4|55061|sushi domain containing 4##NM_152610|C1orf65|164127|chromosome 1 open reading frame 65##AK093047|C1orf65|164127|chromosome 1 open reading frame 65##BC031066|C1orf65|164127|chromosome 1 open reading frame 65##BC030026|C1orf65|164127|chromosome 1 open reading frame 65	0.997842	0.0	
chr1	235530354	235530467	reg1008684.p1	3.978	+	AK309831 TSC_hg19_v1_chr1_+_235492306	-38115	+	NM_001037277 TSC_hg19_v1_chr1_+_235491884 AF057698 AK025139 BC005252 AK293278 AB019036 AB016043 AF125394	-38549	+	TSC_hg19_v1_chr1_-_235491495 AF214114 AK057552 NM_016374 NM_031371	-38898	-	NM_001079515 NM_003193 TSC_hg19_v1_chr1_+_235530744 AK296185 AK298050	333	+	TSC_hg19_v1_chr1_+_235530768 AK093397 AK292287 BC008654	362	+	TSC_hg19_v1_chr1_-_235667473 AK091497	137099	-	NM_001037277|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF057698|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK025139|GGPS1|9453|geranylgeranyl diphosphate synthase 1##BC005252|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AK293278|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB019036|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AB016043|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF125394|GGPS1|9453|geranylgeranyl diphosphate synthase 1##AF214114|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##AK057552|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_016374|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_031371|ARID4B|51742|AT rich interactive domain 4B (RBP1-like)##NM_001079515|TBCE|6905|tubulin folding cofactor E##NM_003193|TBCE|6905|tubulin folding cofactor E##AK296185|TBCE|6905|tubulin folding cofactor E##AK298050|TBCE|6905|tubulin folding cofactor E##AK093397|TBCE|6905|tubulin folding cofactor E##AK292287|TBCE|6905|tubulin folding cofactor E##BC008654|TBCE|6905|tubulin folding cofactor E##AK091497|B3GALNT2|148789|beta-1,3-N-acetylgalactosaminyltransferase 2	1.143081	0.0	denovo_WM_7:-3:0.457	denovo_WM_7:-4:0.457
chr4	138561443	138561624	reg1016863.p1	3.978	+	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-107891	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-107941	-	NM_001114734 TSC_hg19_v1_chr4_-_135122935	-3438615	-	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	601831	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	1375460	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	1443870	-	AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like##AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.219484	0.0	
chr5	142408940	142409093	reg1008139.p2	3.978	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-258708	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-259044	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-331445	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	373807	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	374090	-	BC015610 TSC_hg19_v1_chr5_-_142783214	374195	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	1.989333	0.0	denovo_WM_7:-35:0.981	denovo_WM_7:-50:0.972
chr8	48812776	48812956	reg1008275.p2	3.978	+	TSC_hg19_v1_chr8_-_48650725 BC023510 BC105109 NM_005195 M83667	-162130	-	EU831483 EU831570 TSC_hg19_v1_chr8_-_48650683	-162182	-	TSC_hg19_v1_chr8_+_48173546 D63480 BC031627 AK293809 AK293972 AK294275 AK297681	-639326	+	TSC_hg19_v1_chr8_-_48872697 AK296833	59823	-	TSC_hg19_v1_chr8_-_48872710 U34994 NM_001081640 NM_006904 U47077	59861	-	NM_005914 NM_182746	59896	+	BC105109|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##NM_005195|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##M83667|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##EU831483|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##EU831570|CEBPD|1052|CCAAT/enhancer binding protein (C/EBP), delta##D63480|KIAA0146|23514|KIAA0146##AK293809|KIAA0146|23514|KIAA0146##AK293972|KIAA0146|23514|KIAA0146##AK294275|KIAA0146|23514|KIAA0146##AK297681|KIAA0146|23514|KIAA0146##AK296833|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##U34994|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_001081640|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_006904|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##U47077|PRKDC|5591|protein kinase, DNA-activated, catalytic polypeptide##NM_005914|MCM4|4173|minichromosome maintenance complex component 4##NM_182746|MCM4|4173|minichromosome maintenance complex component 4	0.0	0.0	
chr10	52144720	52144826	reg1012962.p1	3.977	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-136433	-	NM_018232	-306888	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-317051	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	238930	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	354937	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	500620	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.0	0.0	
chr10	6337739	6337815	reg1013628.p2	3.977	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-92901	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-150865	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-150893	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	284484	-	TSC_hg19_v1_chr10_+_6622460 AY007155	284703	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1113473	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.0	
chr1	23964010	23964127	reg1014743.p1	3.977	+	NM_002167 X69111	-77784	-	BT006791 AB528505 DQ892504 DQ895539 DQ895717 TSC_hg19_v1_chr1_-_23885993 BC003107 D28449 AK225965 AK290003	-78084	-	L22846 NM_004091	-106357	-	NM_000975 NM_001199802 TSC_hg19_v1_chr1_+_24018290 D28357 AK311816	54212	+	TSC_hg19_v1_chr1_+_24018295 BC018970	54231	+	NM_003198 AK310229 TSC_hg19_v1_chr1_+_24069922	105836	+	NM_002167|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##X69111|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BT006791|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ892504|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895539|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##DQ895717|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##BC003107|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##D28449|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##AK290003|ID3|3399|inhibitor of DNA binding 3, dominant negative helix-loop-helix protein##L22846|E2F2|1870|E2F transcription factor 2##NM_004091|E2F2|1870|E2F transcription factor 2##NM_000975|RPL11|6135|ribosomal protein L11##NM_001199802|RPL11|6135|ribosomal protein L11##D28357|RPL11|6135|ribosomal protein L11##AK311816|RPL11|6135|ribosomal protein L11##BC018970|RPL11|6135|ribosomal protein L11##NM_003198|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)##AK310229|TCEB3|6924|transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)	0.0	0.997776	CTCF.p2:30:0.998
chr12	54666154	54666283	reg1014730.p1	3.977	+	NM_001127321 TSC_hg19_v1_chr12_-_54653370	-12847	-	BC006821 NM_001127322 TSC_hg19_v1_chr12_-_54653330	-12894	-	BC088352 BC000417 TSC_hg19_v1_chr12_-_54582755 AK091468 AX747003 NM_001243789 NM_001243790 BC105607 AK001789 AK001235 AK222473 AK290274 NM_001243787 NM_001243788 NM_001243791 NM_014311	-83532	-	TSC_hg19_v1_chr12_-_54673880 L07515 S62077	7664	-	TSC_hg19_v1_chr12_-_54673907 NM_012117	7689	-	TSC_hg19_v1_chr12_+_54674509 NM_002136 NM_031157 AK298176 BC009600	8286	+	NM_001127321|CBX5|23468|chromobox homolog 5##BC006821|CBX5|23468|chromobox homolog 5##NM_001127322|CBX5|23468|chromobox homolog 5##BC088352|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC000417|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK091468|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243790|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##BC105607|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001789|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK001235|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK222473|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##AK290274|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243787|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243788|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_001243791|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##NM_014311|SMUG1|23583|single-strand-selective monofunctional uracil-DNA glycosylase 1##L07515|CBX5|23468|chromobox homolog 5##S62077|CBX5|23468|chromobox homolog 5##NM_012117|CBX5|23468|chromobox homolog 5##NM_002136|HNRNPA1|3178|heterogeneous nuclear ribonucleoprotein A1##NM_031157|HNRNPA1|3178|heterogeneous nuclear ribonucleoprotein A1##AK298176|HNRNPA1|3178|heterogeneous nuclear ribonucleoprotein A1##BC009600|HNRNPA1|3178|heterogeneous nuclear ribonucleoprotein A1	0.0	0.0	
chr1	51908291	51908392	reg1010997.p1	3.977	+	AK090936 AX746691 AK308128 BX647676 NM_001159969	-20575	-	AF007170 NM_001144832	-97603	-	TSC_hg19_v1_chr1_-_51796233 AK301587 AK000220	-112109	-	DQ367924 AB384758 BC054006 TSC_hg19_v1_chr1_-_51984939 AK129853 U07707 AK313396	76582	-	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	76683	-	NM_024586 NM_148906 NM_148908 NM_148909	174204	+	AK090936|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK308128|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BX647676|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001159969|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AF007170|TTC39A|22996|tetratricopeptide repeat domain 39A##NM_001144832|TTC39A|22996|tetratricopeptide repeat domain 39A##AK301587|TTC39A|22996|tetratricopeptide repeat domain 39A##AK000220|TTC39A|22996|tetratricopeptide repeat domain 39A##DQ367924|EPS15|2060|epidermal growth factor receptor pathway substrate 15##BC054006|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK129853|EPS15|2060|epidermal growth factor receptor pathway substrate 15##U07707|EPS15|2060|epidermal growth factor receptor pathway substrate 15##AK313396|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9	0.3486	0.0	denovo_WM_7:57:0.349
chr19	4916843	4917023	reg1010580.p1	3.977	+	TSC_hg19_v1_chr19_-_4916833 AK097879	-105	-	TSC_hg19_v1_chr19_+_4910386 AB177624 EF560733 NM_013282	-6481	+	TSC_hg19_v1_chr19_+_4910185 AK289389	-6755	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	52191	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	52240	+	TSC_hg19_v1_chr19_+_5032899 CU687848	115966	+	AB177624|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##EF560733|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_013282|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B	0.0	0.0	
chr2	190725385	190725481	reg1009913.p1	3.977	+	BC036376 TSC_hg19_v1_chr2_+_190649225 BC008410 AK295602 AK308311 BC084548 AY540751 AK297440 BC096330 BC096331 BC096332 AK316215 AK304634	-76233	+	TSC_hg19_v1_chr2_-_190649075 AK074756 NM_001128150 NM_016467	-76335	-	TSC_hg19_v1_chr2_-_190649062 AF151036 AF395704 AK313533 BC005200	-76399	-	AF019627 AB527883 EU446953 BC074757 AK291524 AF104922 NM_005259	201954	-	NM_001042521	277052	+	NM_001042520	289538	+	BC036376|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC008410|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK295602|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK308311|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC084548|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AY540751|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK297440|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC096330|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC096331|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##BC096332|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK316215|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK304634|PMS1|5378|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)##AK074756|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_001128150|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##NM_016467|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF151036|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF395704|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AK313533|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##BC005200|ORMDL1|94101|ORM1-like 1 (S. cerevisiae)##AF019627|MSTN|2660|myostatin##EU446953|MSTN|2660|myostatin##BC074757|MSTN|2660|myostatin##AK291524|MSTN|2660|myostatin##AF104922|MSTN|2660|myostatin##NM_005259|MSTN|2660|myostatin##NM_001042521|C2orf88|84281|chromosome 2 open reading frame 88##NM_001042520|C2orf88|84281|chromosome 2 open reading frame 88	0.88683	0.0	
chr5	78207389	78207536	reg1009667.p1	3.977	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-262896	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-362439	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-401266	-	J05225 TSC_hg19_v1_chr5_-_78281101	73626	-	AK290865 TSC_hg19_v1_chr5_-_78281134	73671	-	TSC_hg19_v1_chr5_-_78281142 AK314903	73684	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	2.008973	0.0	
chr1	208147379	208147510	reg1001788.p1	3.976	+	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	-62887	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	-63061	-	BX640941 TSC_hg19_v1_chr1_-_208059392	-88121	-	TSC_hg19_v1_chr1_-_208417635 NM_025179	270205	-	AK091113 AX746785 NM_001104548	1454721	+	NM_020439 AK095713 AK289675 AF428261 BC032787	1609616	+	BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##NM_025179|PLXNA2|5362|plexin A2##NM_001104548|MIR205HG|642587|MIR205 host gene (non-protein coding)##NM_020439|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK095713|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK289675|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AF428261|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##BC032787|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG	0.533588	0.0	denovo_WM_7:24:0.395
chr12	129306387	129306520	reg1015029.p1	3.976	+	NM_001136103	-554506	+	NM_052907	-3495292	+	TSC_hg19_v1_chr12_+_125549988 AK308779 AK024036 AK022451 AK304176 BC051862 AB054121 AY091468	-3756385	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	1990	-	BC043528 TSC_hg19_v1_chr12_+_129337985	31531	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	31634	+	NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##AK308779|AACS|65985|acetoacetyl-CoA synthetase##AK024036|AACS|65985|acetoacetyl-CoA synthetase##AK022451|AACS|65985|acetoacetyl-CoA synthetase##AK304176|AACS|65985|acetoacetyl-CoA synthetase##BC051862|AACS|65985|acetoacetyl-CoA synthetase##AB054121|AACS|65985|acetoacetyl-CoA synthetase##AY091468|AACS|65985|acetoacetyl-CoA synthetase##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1	1.19203	0.0	denovo_WM_7:0:0.202	denovo_WM_7:-14:0.289	denovo_WM_7:-15:0.289
chr13	36918106	36918259	reg1016555.p1	3.976	+	BC013944 TSC_hg19_v1_chr13_-_36872001 BC037403 AK301863 NM_001144981 NM_001144982 NM_001144983 NM_001144984 NM_001144985 NM_001144986 NM_001198908 NM_001198910	-46190	-	BC171867 BC146975 BC171872 BC171874 BC171880 BC171881 BC171882 BC171884 TSC_hg19_v1_chr13_-_36871939 AK131058 AK308999	-46260	-	AB527575 AK000456 BC025383 NM_017826	-129474	-	TSC_hg19_v1_chr13_-_36920464 AK001949 AB011182 AY123329 BC047083	2259	-	TSC_hg19_v1_chr13_-_36920498 AK291724	2318	-	TSC_hg19_v1_chr13_-_36920622 BC026284 NM_001142296 NM_015087	2442	-	BC013944|CCDC169|728591|coiled-coil domain containing 169##BC037403|CCDC169|728591|coiled-coil domain containing 169##AK301863|CCDC169-SOHLH2|100526761|CCDC169-SOHLH2 readthrough##NM_001144981|CCDC169|728591|coiled-coil domain containing 169##NM_001144982|CCDC169|728591|coiled-coil domain containing 169##NM_001144983|CCDC169|728591|coiled-coil domain containing 169##NM_001144984|CCDC169|728591|coiled-coil domain containing 169##NM_001144985|CCDC169|728591|coiled-coil domain containing 169##NM_001144986|CCDC169|728591|coiled-coil domain containing 169##NM_001198908|CCDC169|728591|coiled-coil domain containing 169##NM_001198910|CCDC169-SOHLH2|100526761|CCDC169-SOHLH2 readthrough##BC171867|CCDC169|728591|coiled-coil domain containing 169##BC146975|CCDC169|728591|coiled-coil domain containing 169##BC171872|CCDC169|728591|coiled-coil domain containing 169##BC171874|CCDC169|728591|coiled-coil domain containing 169##BC171880|CCDC169|728591|coiled-coil domain containing 169##BC171881|CCDC169|728591|coiled-coil domain containing 169##BC171882|CCDC169|728591|coiled-coil domain containing 169##BC171884|CCDC169|728591|coiled-coil domain containing 169##AK131058|CCDC169|728591|coiled-coil domain containing 169##AK308999|CCDC169|728591|coiled-coil domain containing 169##AK000456|SOHLH2|54937|spermatogenesis and oogenesis specific basic helix-loop-helix 2##BC025383|SOHLH2|54937|spermatogenesis and oogenesis specific basic helix-loop-helix 2##NM_017826|SOHLH2|54937|spermatogenesis and oogenesis specific basic helix-loop-helix 2##AK001949|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AB011182|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AY123329|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##BC047083|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##AK291724|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##BC026284|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_001142296|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)##NM_015087|SPG20|23111|spastic paraplegia 20 (Troyer syndrome)	1.293818	0.0	denovo_WM_7:0:0.406	denovo_WM_7:-1:0.407
chr19	42463521	42463675	reg1009612.p1	3.976	+	TSC_hg19_v1_chr19_-_42463500 NM_006423	-78	-	AF112996 BT019964 CR457214 CR542116 AB590878 AF112202 AJ133534 BC008950 TSC_hg19_v1_chr19_-_42463499	-130	-	NM_199002 TSC_hg19_v1_chr19_+_42388510 BC034013 BC067262	-75112	+	AK295833 TSC_hg19_v1_chr19_-_42498254	34639	-	TSC_hg19_v1_chr19_-_42498383 BC009282 BC009394 BC015566 BC013763 AK307921 AK316069 AK223569 AK293784 AK295078 NM_152296	34774	-	S40369 AJ249209 BC131717 NM_002088	106340	-	NM_006423|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112996|RABAC1|10567|Rab acceptor 1 (prenylated)##BT019964|RABAC1|10567|Rab acceptor 1 (prenylated)##CR457214|RABAC1|10567|Rab acceptor 1 (prenylated)##CR542116|RABAC1|10567|Rab acceptor 1 (prenylated)##AF112202|RABAC1|10567|Rab acceptor 1 (prenylated)##AJ133534|RABAC1|10567|Rab acceptor 1 (prenylated)##BC008950|RABAC1|10567|Rab acceptor 1 (prenylated)##NM_199002|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC034013|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##BC067262|ARHGEF1|9138|Rho guanine nucleotide exchange factor (GEF) 1##AK295833|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC009282|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC009394|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC015566|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##BC013763|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK307921|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK316069|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK223569|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK293784|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##AK295078|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##NM_152296|ATP1A3|478|ATPase, Na+/K+ transporting, alpha 3 polypeptide##S40369|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##AJ249209|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC131717|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##NM_002088|GRIK5|2901|glutamate receptor, ionotropic, kainate 5	0.0	0.0	
chr6	34545605	34545713	reg1017702.p1	3.976	+	AB031549 BC021299 AF071538 AK301543 NM_001252294 NM_012391	-21563	-	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	-63005	+	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	-111755	+	TSC_hg19_v1_chr6_-_34664565 AK313410 BC002328 BC010184 AK056964 BC075810	118887	-	TSC_hg19_v1_chr6_-_34664631 NM_022758 NM_024294	118967	-	NM_003093	179211	+	AB031549|SPDEF|25803|SAM pointed domain containing ets transcription factor##BC021299|SPDEF|25803|SAM pointed domain containing ets transcription factor##AF071538|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK301543|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_001252294|SPDEF|25803|SAM pointed domain containing ets transcription factor##NM_012391|SPDEF|25803|SAM pointed domain containing ets transcription factor##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK313410|C6orf106|64771|chromosome 6 open reading frame 106##BC002328|C6orf106|64771|chromosome 6 open reading frame 106##BC010184|C6orf106|64771|chromosome 6 open reading frame 106##AK056964|C6orf106|64771|chromosome 6 open reading frame 106##BC075810|C6orf106|64771|chromosome 6 open reading frame 106##NM_022758|C6orf106|64771|chromosome 6 open reading frame 106##NM_024294|C6orf106|64771|chromosome 6 open reading frame 106##NM_003093|SNRPC|6631|small nuclear ribonucleoprotein polypeptide C	1.979065	0.0	denovo_WM_7:-72:0.950	denovo_WM_7:-87:0.958
chr7	90338507	90338573	reg1005188.p1	3.976	+	TSC_hg19_v1_chr7_+_90225634 AK297974 AF119833	-112731	+	TSC_hg19_v1_chr7_+_90032774 AL136770 BC016061	-305736	+	NM_001185072 NM_001185073 NM_012129 TSC_hg19_v1_chr7_+_90032761 BC068532 AK312480	-305836	+	AB020641 BC152436 BC167152 BC167156 NM_012395 BC136477 AK289782 AB384534 BC152388	243	+	AK295086 AK296406 AK307484 AK316026 TSC_hg19_v1_chr7_+_90339175	620	+	BC017719 TSC_hg19_v1_chr7_+_90893724	555161	+	AK297974|CDK14|5218|cyclin-dependent kinase 14##AF119833|CDK14|5218|cyclin-dependent kinase 14##AL136770|CLDN12|9069|claudin 12##NM_001185072|CLDN12|9069|claudin 12##NM_001185073|CLDN12|9069|claudin 12##NM_012129|CLDN12|9069|claudin 12##BC068532|CLDN12|9069|claudin 12##AK312480|CLDN12|9069|claudin 12##AB020641|CDK14|5218|cyclin-dependent kinase 14##BC152436|CDK14|5218|cyclin-dependent kinase 14##BC167152|CDK14|5218|cyclin-dependent kinase 14##BC167156|CDK14|5218|cyclin-dependent kinase 14##NM_012395|CDK14|5218|cyclin-dependent kinase 14##BC136477|CDK14|5218|cyclin-dependent kinase 14##AK289782|CDK14|5218|cyclin-dependent kinase 14##BC152388|CDK14|5218|cyclin-dependent kinase 14##AK295086|CDK14|5218|cyclin-dependent kinase 14##AK296406|CDK14|5218|cyclin-dependent kinase 14##AK307484|CDK14|5218|cyclin-dependent kinase 14##AK316026|CDK14|5218|cyclin-dependent kinase 14##BC017719|FZD1|8321|frizzled family receptor 1	0.0	0.0	
chr8	17781448	17781514	reg1012003.p1	3.976	+	TSC_hg19_v1_chr8_+_17780529 BC065022 BC027477 BC140946	-958	+	TSC_hg19_v1_chr8_+_17780501 BC000453	-976	+	TSC_hg19_v1_chr8_+_17780498 AK307583 BC098391	-986	+	TSC_hg19_v1_chr8_+_17822094 AF068293	40629	+	TSC_hg19_v1_chr8_+_17829865 AK091406 AX746961 AK302378	48488	+	AB528408 CU677637 DQ891071 DQ894254 U70063 TSC_hg19_v1_chr8_-_17941584 U47674	160095	-	BC065022|PCM1|5108|pericentriolar material 1##BC027477|PCM1|5108|pericentriolar material 1##BC140946|PCM1|5108|pericentriolar material 1##BC000453|PCM1|5108|pericentriolar material 1##AK307583|PCM1|5108|pericentriolar material 1##AF068293|PCM1|5108|pericentriolar material 1##AK091406|PCM1|5108|pericentriolar material 1##AK302378|PCM1|5108|pericentriolar material 1##DQ891071|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##DQ894254|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U70063|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1##U47674|ASAH1|427|N-acylsphingosine amidohydrolase (acid ceramidase) 1	0.871247	0.0	denovo_WM_7:27:0.243	denovo_WM_7:35:0.382
chr11	19262219	19262399	reg1012594.p1	3.975	+	U20324 U72899 U49837 BC057221 NM_001127656 TSC_hg19_v1_chr11_-_19223531 AK313289 NM_003476 AF121260	-38751	-	TSC_hg19_v1_chr11_+_19138714 BC050690 BC056152 NM_001001483 NM_019028 AB097014 AB097027 AK001714 BX648156 BC036020 AK291348 AB024495 CU691124	-123592	+	BC063450 NM_054030	-180082	-	TSC_hg19_v1_chr11_-_19262479 AK055206 BC108700 BC126400 BC126402 NM_024680	166	-	AB231781 AB231782 AB231783 AK292688 TSC_hg19_v1_chr11_-_19263201	892	-	AB063115 NM_001111018 AJ488205	110006	+	U20324|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U72899|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##U49837|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##BC057221|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_001127656|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AK313289|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##NM_003476|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##AF121260|CSRP3|8048|cysteine and glycine-rich protein 3 (cardiac LIM protein)##BC050690|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC056152|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_001001483|ZDHHC13|54503|zinc finger, DHHC-type containing 13##NM_019028|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097014|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB097027|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK001714|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BX648156|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC036020|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AK291348|ZDHHC13|54503|zinc finger, DHHC-type containing 13##AB024495|ZDHHC13|54503|zinc finger, DHHC-type containing 13##BC063450|MRGPRX2|117194|MAS-related GPR, member X2##NM_054030|MRGPRX2|117194|MAS-related GPR, member X2##AK055206|E2F8|79733|E2F transcription factor 8##BC108700|E2F8|79733|E2F transcription factor 8##BC126400|E2F8|79733|E2F transcription factor 8##BC126402|E2F8|79733|E2F transcription factor 8##NM_024680|E2F8|79733|E2F transcription factor 8##AB231781|E2F8|79733|E2F transcription factor 8##AK292688|E2F8|79733|E2F transcription factor 8##AB063115|NAV2|89797|neuron navigator 2##NM_001111018|NAV2|89797|neuron navigator 2##AJ488205|NAV2|89797|neuron navigator 2	0.0	0.0	
chr1	178069654	178069779	reg1012440.p1	3.975	+	BC110611 TSC_hg19_v1_chr1_+_178063651	-6075	+	TSC_hg19_v1_chr1_+_178063306 BC063442	-6412	+	TSC_hg19_v1_chr1_+_178063275 BC030292	-6441	+	AF047711 NM_004841 AK290308	240918	+	AL136694 NM_001170722 NM_001170723 NM_001170724 NM_032126 AK093269 AX748023 AK097518 BC034972 AB528085 AM392874 AM393664	412550	+	TSC_hg19_v1_chr1_+_178694378 BC047391 NM_152663 AK001106 AK301753	624657	+	BC110611|RASAL2|9462|RAS protein activator like 2##BC063442|RASAL2|9462|RAS protein activator like 2##BC030292|RASAL2|9462|RAS protein activator like 2##AF047711|RASAL2|9462|RAS protein activator like 2##NM_004841|RASAL2|9462|RAS protein activator like 2##AK290308|RASAL2|9462|RAS protein activator like 2##AL136694|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170722|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170723|C1orf49|84066|chromosome 1 open reading frame 49##NM_001170724|C1orf49|84066|chromosome 1 open reading frame 49##NM_032126|C1orf49|84066|chromosome 1 open reading frame 49##AK093269|C1orf49|84066|chromosome 1 open reading frame 49##BC034972|C1orf49|84066|chromosome 1 open reading frame 49##AM392874|C1orf49|84066|chromosome 1 open reading frame 49##AM393664|C1orf49|84066|chromosome 1 open reading frame 49##BC047391|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##NM_152663|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK001106|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2##AK301753|RALGPS2|55103|Ral GEF with PH domain and SH3 binding motif 2	1.262794	0.0	denovo_WM_7:22:0.265	denovo_WM_7:-43:0.298	denovo_WM_7:-44:0.298	denovo_WM_7:-45:0.298
chr13	100019200	100019380	reg1005512.p3	3.975	+	TSC_hg19_v1_chr13_-_99959654 AK223390 BC020752 AK292091 AK313443 NM_004951	-59592	-	AF261135 BC050646 AF339781 BC008569 NM_001098200 NM_005292	-108676	-	TSC_hg19_v1_chr13_+_99853107 AK129861 AK075419 AK075516 AK300908 AK124404 AK054563 NM_177967	-166171	+	TSC_hg19_v1_chr13_+_100153694 BC110656 AK290514 AK315210 AK225800 NM_004800 U81006	134410	+	TSC_hg19_v1_chr13_+_100153777 BC130293	134492	+	BC041830 TSC_hg19_v1_chr13_+_100229390	210087	+	AK223390|GPR183|1880|G protein-coupled receptor 183##BC020752|GPR183|1880|G protein-coupled receptor 183##AK292091|GPR183|1880|G protein-coupled receptor 183##AK313443|GPR183|1880|G protein-coupled receptor 183##NM_004951|GPR183|1880|G protein-coupled receptor 183##AF261135|GPR18|2841|G protein-coupled receptor 18##BC050646|GPR18|2841|G protein-coupled receptor 18##AF339781|GPR18|2841|G protein-coupled receptor 18##BC008569|GPR18|2841|G protein-coupled receptor 18##NM_001098200|GPR18|2841|G protein-coupled receptor 18##NM_005292|GPR18|2841|G protein-coupled receptor 18##AK129861|UBAC2|337867|UBA domain containing 2##AK075419|UBAC2|337867|UBA domain containing 2##AK075516|UBAC2|337867|UBA domain containing 2##AK300908|UBAC2|337867|UBA domain containing 2##AK124404|UBAC2|337867|UBA domain containing 2##AK054563|UBAC2|337867|UBA domain containing 2##NM_177967|UBAC2|337867|UBA domain containing 2##BC110656|TM9SF2|9375|transmembrane 9 superfamily member 2##AK290514|TM9SF2|9375|transmembrane 9 superfamily member 2##AK315210|TM9SF2|9375|transmembrane 9 superfamily member 2##AK225800|TM9SF2|9375|transmembrane 9 superfamily member 2##NM_004800|TM9SF2|9375|transmembrane 9 superfamily member 2##U81006|TM9SF2|9375|transmembrane 9 superfamily member 2##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2	0.0	0.0	
chr15	96389750	96389820	reg1009028.p1	3.975	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-519466	-	NM_001159644 BC025708 BC111024 AK002037	-1490476	+	NM_001159643 NM_018349 AY656717 BC131527	-1548324	+	BC106083 NM_001145155 FM208183	479376	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	484192	+	AK316086 NM_001145156	486008	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.503563	0.0	denovo_WM_7:-25:0.424
chr17	7039514	7039618	reg1001437.p1	3.975	+	X55283 TSC_hg19_v1_chr17_-_7018083 BC017251 NM_001181 NM_001201352 NM_080912 NM_080913 AK310123 AK303787	-21396	-	X55284 TSC_hg19_v1_chr17_-_7018008 M11025	-21577	-	AF529374 U97197 AB528625 CU677885 DQ892652 DQ895891 NM_080914	-21973	-	BC032130 TSC_hg19_v1_chr17_-_7082568	42998	-	M10058 AB070933 TSC_hg19_v1_chr17_-_7082680 AK308375 AK124286 NM_001197216 NM_001671	43202	-	TSC_hg19_v1_chr17_-_7106561 BC040533	67028	-	X55283|ASGR2|433|asialoglycoprotein receptor 2##BC017251|ASGR2|433|asialoglycoprotein receptor 2##NM_001181|ASGR2|433|asialoglycoprotein receptor 2##NM_001201352|ASGR2|433|asialoglycoprotein receptor 2##NM_080912|ASGR2|433|asialoglycoprotein receptor 2##NM_080913|ASGR2|433|asialoglycoprotein receptor 2##AK310123|ASGR2|433|asialoglycoprotein receptor 2##AK303787|ASGR2|433|asialoglycoprotein receptor 2##X55284|ASGR2|433|asialoglycoprotein receptor 2##M11025|ASGR2|433|asialoglycoprotein receptor 2##AF529374|ASGR2|433|asialoglycoprotein receptor 2##U97197|ASGR2|433|asialoglycoprotein receptor 2##DQ892652|ASGR2|433|asialoglycoprotein receptor 2##DQ895891|ASGR2|433|asialoglycoprotein receptor 2##NM_080914|ASGR2|433|asialoglycoprotein receptor 2##BC032130|ASGR1|432|asialoglycoprotein receptor 1##M10058|ASGR1|432|asialoglycoprotein receptor 1##AB070933|ASGR1|432|asialoglycoprotein receptor 1##AK308375|ASGR1|432|asialoglycoprotein receptor 1##AK124286|ASGR1|432|asialoglycoprotein receptor 1##NM_001197216|ASGR1|432|asialoglycoprotein receptor 1##NM_001671|ASGR1|432|asialoglycoprotein receptor 1##BC040533|DLG4|1742|discs, large homolog 4 (Drosophila)	0.999206	0.0	denovo_WM_7:-79:0.310	denovo_WM_7:-80:0.310	denovo_WM_7:-81:0.310
chr19	54704290	54704376	reg1006062.p1	3.975	+	NM_001077446 TSC_hg19_v1_chr19_+_54695138 BC020805 DQ893336 DQ896652	-9174	+	NM_024075 AK300054 TSC_hg19_v1_chr19_+_54694196 BC000944 AK054944 AK226013 AK025929 AK225385	-10172	+	TSC_hg19_v1_chr19_-_54693534 BC006309 AK055908 NM_001146056 NM_001146082 NM_001146083 NM_024298	-10709	-	TSC_hg19_v1_chr19_+_54704724 AB055775 AK095055 NM_001013 BC068055 BC050660 BC007410 BC007434 BC071940 BC007857 BC071941	369	+	AK290917 NM_001081450 NM_006864	22609	-	AF000575 EU814627 EU814628 AF009632 AF009633 AF009634 AF009635 AF009636 AF009637 AF009638 AF009639 AF009640 AF009641 AF009642 AF009643 AF009644 AF031553 AF031554 AF031555 AF031556 BC028153 AB463830 BC041708 BC104993 BC112198 EU915603 EU915604 EU915605 U91928 AK223265 AF025533 NM_024318	42328	-	NM_001077446|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##BC020805|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##DQ893336|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##DQ896652|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##NM_024075|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK300054|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##BC000944|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK054944|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK226013|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK025929|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##AK225385|TSEN34|79042|tRNA splicing endonuclease 34 homolog (S. cerevisiae)##BC006309|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##AK055908|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_001146056|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_001146082|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_001146083|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##NM_024298|MBOAT7|79143|membrane bound O-acyltransferase domain containing 7##AB055775|RPS9|6203|ribosomal protein S9##AK095055|RPS9|6203|ribosomal protein S9##NM_001013|RPS9|6203|ribosomal protein S9##BC068055|RPS9|6203|ribosomal protein S9##BC050660|RPS9|6203|ribosomal protein S9##BC007410|RPS9|6203|ribosomal protein S9##BC007434|RPS9|6203|ribosomal protein S9##BC071940|RPS9|6203|ribosomal protein S9##BC007857|RPS9|6203|ribosomal protein S9##BC071941|RPS9|6203|ribosomal protein S9##AK290917|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##NM_001081450|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##NM_006864|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF000575|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU814627|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU814628|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009632|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009633|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009634|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009635|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009636|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009637|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009638|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009639|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009640|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009641|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009642|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009643|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF009644|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031553|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031554|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031555|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF031556|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##BC028153|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##BC041708|LILRA6|79168|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6##BC104993|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##BC112198|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU915603|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU915604|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##EU915605|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##U91928|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AK223265|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##AF025533|LILRB3|11025|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3##NM_024318|LILRA6|79168|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	0.996362	0.0	denovo_WM_7:-13:0.829
chr2	242332344	242332448	reg1015975.p2	3.975	+	TSC_hg19_v1_chr2_+_242295703 NM_014808 AK300435 AB018336 BC021301	-36696	+	TSC_hg19_v1_chr2_+_242255366 AK294563	-77030	+	TSC_hg19_v1_chr2_+_242255355 D28540	-77041	+	BT019961 CU675833 CU677445 DQ893230 DQ896559 AB529004 D63780 X99325 TSC_hg19_v1_chr2_-_242447784 BC015793	115231	-	TSC_hg19_v1_chr2_-_242447969 AK092161 AK302751 AK297374 AK301214 AK291808 AK291947	115563	-	TSC_hg19_v1_chr2_-_242448000 BC091505 AK315966 BC007852 NM_006374	115635	-	NM_014808|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AK300435|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AB018336|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##BC021301|FARP2|9855|FERM, RhoGEF and pleckstrin domain protein 2##AK294563|SEPT2|4735|septin 2##D28540|SEPT2|4735|septin 2##BT019961|STK25|10494|serine/threonine kinase 25##DQ893230|STK25|10494|serine/threonine kinase 25##DQ896559|STK25|10494|serine/threonine kinase 25##D63780|STK25|10494|serine/threonine kinase 25##X99325|STK25|10494|serine/threonine kinase 25##BC015793|STK25|10494|serine/threonine kinase 25##AK092161|STK25|10494|serine/threonine kinase 25##AK302751|STK25|10494|serine/threonine kinase 25##AK297374|STK25|10494|serine/threonine kinase 25##AK301214|STK25|10494|serine/threonine kinase 25##AK291808|STK25|10494|serine/threonine kinase 25##AK291947|STK25|10494|serine/threonine kinase 25##BC091505|STK25|10494|serine/threonine kinase 25##AK315966|STK25|10494|serine/threonine kinase 25##BC007852|STK25|10494|serine/threonine kinase 25##NM_006374|STK25|10494|serine/threonine kinase 25	1.226164	0.0	denovo_WM_7:-26:0.314	denovo_WM_7:-28:0.539	denovo_WM_7:41:0.215
chr4	39586093	39586203	reg1016634.p1	3.975	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-56522	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-56973	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-57141	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	54408	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	113656	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	393190	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	1.065806	0.0	
chr1	24236834	24236926	reg1014055.p1	3.974	+	CU675950 TSC_hg19_v1_chr1_-_24194781 M29877 AB074175 AK092914 AK095443 AK095455 AK225468 AK301302 AK310143 AK314649 AX747804 BC017338 AK295535 NM_000147	-42071	-	TSC_hg19_v1_chr1_-_24151934 NM_000191 NM_001166059	-84932	-	TSC_hg19_v1_chr1_-_24151929 BC021145 BT009792 CR456884 CU679747 DQ892083 DQ895276 L07033 BC010570 AK309129 AK300733 AK313869	-84993	-	BC069722 NM_001841 X74328 FJ357036	2924	-	NM_017761 TSC_hg19_v1_chr1_+_24286310	49425	+	TSC_hg19_v1_chr1_+_24286317 AF151042 AK300522 BC068475 AK311305 BC001959 BC085018 BC078177 AF374386	49466	+	M29877|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AB074175|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK092914|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095443|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK095455|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK225468|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK301302|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK310143|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK314649|FUCA1|2517|fucosidase, alpha-L- 1, tissue##BC017338|FUCA1|2517|fucosidase, alpha-L- 1, tissue##AK295535|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000147|FUCA1|2517|fucosidase, alpha-L- 1, tissue##NM_000191|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##NM_001166059|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC021145|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BT009792|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##CR456884|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ892083|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##DQ895276|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##L07033|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC010570|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK309129|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK300733|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##AK313869|HMGCL|3155|3-hydroxymethyl-3-methylglutaryl-CoA lyase##BC069722|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_001841|CNR2|1269|cannabinoid receptor 2 (macrophage)##X74328|CNR2|1269|cannabinoid receptor 2 (macrophage)##NM_017761|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF151042|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC068475|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AK311305|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC001959|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC085018|PNRC2|55629|proline-rich nuclear receptor coactivator 2##BC078177|PNRC2|55629|proline-rich nuclear receptor coactivator 2##AF374386|PNRC2|55629|proline-rich nuclear receptor coactivator 2	0.267374	0.0	denovo_WM_7:30:0.267
chr15	42797148	42797219	reg1004558.p1	3.974	+	U55936 TSC_hg19_v1_chr15_+_42787875 BC022890 BC003686 AK313161 BC000148 AJ011915	-9316	+	AK290152 AK315279 NM_003825 NM_130798	-9703	+	TSC_hg19_v1_chr15_-_42783322 AK226132 BX649141 AK302735	-13859	-	BX538324 TSC_hg19_v1_chr15_-_42840973 BC051262 BC058935 AK094131 CR749223 AK309861	43767	-	TSC_hg19_v1_chr15_-_42840992 AK094891 NM_153260	43821	-	TSC_hg19_v1_chr15_+_42841055 NM_001130447 NM_018097 AK022939 BC010903 AK001322	43846	+	U55936|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC022890|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC003686|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK313161|SNAP23|8773|synaptosomal-associated protein, 23kDa##BC000148|SNAP23|8773|synaptosomal-associated protein, 23kDa##AJ011915|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK290152|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK315279|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_003825|SNAP23|8773|synaptosomal-associated protein, 23kDa##NM_130798|SNAP23|8773|synaptosomal-associated protein, 23kDa##AK226132|ZFP106|64397|zinc finger protein 106 homolog (mouse)##AK302735|ZFP106|64397|zinc finger protein 106 homolog (mouse)##BX538324|LRRC57|255252|leucine rich repeat containing 57##BC051262|LRRC57|255252|leucine rich repeat containing 57##BC058935|LRRC57|255252|leucine rich repeat containing 57##AK094131|LRRC57|255252|leucine rich repeat containing 57##CR749223|LRRC57|255252|leucine rich repeat containing 57##AK309861|LRRC57|255252|leucine rich repeat containing 57##AK094891|LRRC57|255252|leucine rich repeat containing 57##NM_153260|LRRC57|255252|leucine rich repeat containing 57##NM_001130447|HAUS2|55142|HAUS augmin-like complex, subunit 2##NM_018097|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK022939|HAUS2|55142|HAUS augmin-like complex, subunit 2##BC010903|HAUS2|55142|HAUS augmin-like complex, subunit 2##AK001322|HAUS2|55142|HAUS augmin-like complex, subunit 2	0.0	0.0	
chr15	64106619	64106735	reg1015663.p1	3.974	+	BC017581 BC036918 AK093077 TSC_hg19_v1_chr15_-_63893135	-213635	-	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	-217098	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	-309800	+	TSC_hg19_v1_chr15_-_64126081 U50078	19407	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	19443	-	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	19463	-	BC017581|LOC100130855|100130855|uncharacterized LOC100130855##BC036918|LOC100130855|100130855|uncharacterized LOC100130855##AK093077|LOC100130855|100130855|uncharacterized LOC100130855##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	0.265545	0.0	denovo_WM_7:-5:0.247
chr18	60988777	60988894	reg1016365.p1	3.974	+	TSC_hg19_v1_chr18_-_60987309 M13994	-1549	-	TSC_hg19_v1_chr18_-_60986977 X06487	-1842	-	BC027258 NM_000633 NM_000657	-2275	-	AB529042 BT006782 AK312360 TSC_hg19_v1_chr18_-_61034440 AK297670 AK025120 X63657 BC008797 NM_002035	45592	-	CU691728 EU831666 EU831748 AY232629 TSC_hg19_v1_chr18_-_61089613	100720	-	TSC_hg19_v1_chr18_-_61089648 AK291253	100812	-	M13994|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##BT006782|KDSR|2531|3-ketodihydrosphingosine reductase##AK312360|KDSR|2531|3-ketodihydrosphingosine reductase##AK297670|KDSR|2531|3-ketodihydrosphingosine reductase##AK025120|KDSR|2531|3-ketodihydrosphingosine reductase##X63657|KDSR|2531|3-ketodihydrosphingosine reductase##BC008797|KDSR|2531|3-ketodihydrosphingosine reductase##NM_002035|KDSR|2531|3-ketodihydrosphingosine reductase##EU831666|VPS4B|9525|vacuolar protein sorting 4 homolog B (S. cerevisiae)##EU831748|VPS4B|9525|vacuolar protein sorting 4 homolog B (S. cerevisiae)##AY232629|VPS4B|9525|vacuolar protein sorting 4 homolog B (S. cerevisiae)##AK291253|VPS4B|9525|vacuolar protein sorting 4 homolog B (S. cerevisiae)	0.996942	0.0	denovo_WM_7:21:0.841
chr20	48419623	48419803	reg1010563.p2	3.974	+	TSC_hg19_v1_chr20_-_48330471 NM_004776	-89247	-	AB004550 TSC_hg19_v1_chr20_-_48330359	-89357	-	TSC_hg19_v1_chr20_-_48330210 AB527656 HQ258208 AF038663 BC074821 BC074873 BC104987 BC112265	-89483	-	NM_015266 TSC_hg19_v1_chr20_+_48429364 AK300318	9595	+	CR749638 TSC_hg19_v1_chr20_+_48429436 AB023156 BC112213 AK295803 AK308328 AK131001 AK295665 AK310530 AK295822	9705	+	AK289644 NM_001135773	110562	-	NM_004776|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AB004550|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##HQ258208|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##AF038663|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074821|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC074873|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC104987|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##BC112265|B4GALT5|9334|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5##NM_015266|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK300318|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##CR749638|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AB023156|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##BC112213|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295803|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK308328|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK131001|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295665|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK310530|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK295822|SLC9A8|23315|solute carrier family 9 (sodium/hydrogen exchanger), member 8##AK289644|SPATA2|9825|spermatogenesis associated 2##NM_001135773|SPATA2|9825|spermatogenesis associated 2	1.97088	0.0	denovo_WM_7:8:0.965	denovo_WM_7:-16:0.981
chr2	75691854	75691986	reg1016692.p1	3.974	+	AK289765 NM_001058 NM_015727	-265292	-	TSC_hg19_v1_chr2_+_75185771 NM_019896 BC031331	-506135	+	TSC_hg19_v1_chr2_-_75062285 BC013295	-629669	-	BC016157 TSC_hg19_v1_chr2_-_75788066	96127	-	TSC_hg19_v1_chr2_-_75788091 NM_001135032	96170	-	AK023453 NM_032181	104927	-	AK289765|TACR1|6869|tachykinin receptor 1##NM_001058|TACR1|6869|tachykinin receptor 1##NM_015727|TACR1|6869|tachykinin receptor 1##NM_019896|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC031331|POLE4|56655|polymerase (DNA-directed), epsilon 4 (p12 subunit)##BC016157|FAM176A|84141|family with sequence similarity 176, member A##NM_001135032|FAM176A|84141|family with sequence similarity 176, member A##AK023453|FAM176A|84141|family with sequence similarity 176, member A##NM_032181|FAM176A|84141|family with sequence similarity 176, member A	0.763624	0.817634	denovo_WM_7:27:0.764	CTCF.p2:-42:0.818
chr4	38505759	38505868	reg1015200.p1	3.974	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-526796	+	AF095288 BC069114 BC069400 NM_006607	-543758	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-613024	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	160013	+	AF289565 TSC_hg19_v1_chr4_-_38666549	160676	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	278786	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.763159	0.0	denovo_WM_7:-52:0.431
chr5	157304979	157305097	reg1014494.p2	3.974	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-18948	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-120658	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-134298	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	1221419	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	1221704	-	AK304228 NM_001199382	1329610	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.992324	0.0	denovo_WM_7:34:0.241	denovo_WM_7:35:0.281	denovo_WM_7:38:0.422
chr9	139595947	139596034	reg1000481.p2	3.974	+	TSC_hg19_v1_chr9_-_139581926 NM_001012727 NM_006412	-14075	-	AF011374 TSC_hg19_v1_chr9_-_139581883 AF000237	-14113	-	TSC_hg19_v1_chr9_-_139581856 BC004529 BC019292 U56418 BC000026	-14151	-	TSC_hg19_v1_chr9_+_139607008 NM_152421 BC032097 CU689268	11026	+	BC061888 TSC_hg19_v1_chr9_-_139622638 BC055011 BC059956 AK054908 AK090585 BC042369 BC042667	26633	-	AY301271 BC133045 BC144440 BC144441 BC171741 NM_001001712	41392	-	NM_001012727|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##NM_006412|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##AF011374|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##AF000237|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC004529|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC019292|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##U56418|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##BC000026|AGPAT2|10555|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)##NM_152421|FAM69B|138311|family with sequence similarity 69, member B##BC032097|FAM69B|138311|family with sequence similarity 69, member B##BC061888|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC055011|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC059956|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##AK054908|SNORA43|677824|small nucleolar RNA, H/ACA box 43##AK090585|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC042369|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##BC042667|SNHG7|84973|small nucleolar RNA host gene 7 (non-protein coding)##AY301271|LCN10|414332|lipocalin 10##BC133045|LCN10|414332|lipocalin 10##BC144440|LCN10|414332|lipocalin 10##BC144441|LCN10|414332|lipocalin 10##BC171741|LCN10|414332|lipocalin 10##NM_001001712|LCN10|414332|lipocalin 10	0.0	0.0	
chr10	20236487	20236612	reg1012436.p1	3.973	+	TSC_hg19_v1_chr10_+_20105360 AK304591 AY358486 NM_032812	-131176	+	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	-1288128	+	BC033534 TSC_hg19_v1_chr10_-_18948215	-1288352	-	NM_006393 Y16241	949981	-	BC140744 BC144447 NM_001010896 NM_001177483	1198938	-	AB209311 TSC_hg19_v1_chr10_-_21462987	1226438	-	AK304591|PLXDC2|84898|plexin domain containing 2##AY358486|PLXDC2|84898|plexin domain containing 2##NM_032812|PLXDC2|84898|plexin domain containing 2##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B##NM_006393|NEBL|10529|nebulette##Y16241|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113##AB209311|NEBL|10529|nebulette	1.846621	0.0	denovo_WM_7:74:0.762	denovo_WM_7:95:0.447	denovo_WM_7:96:0.447
chr10	60753763	60753943	reg1002826.p2	3.973	+	TSC_hg19_v1_chr10_+_60272869 NM_001080512 AY726586	-480941	+	BC029815 TSC_hg19_v1_chr10_+_60145169 AK312558 M62810 NM_003201 BC018628 BC104482 BC126366 EU279428 HQ258758 AB451241 AB451366 AB464302 BT019658 BT019659 CR407653	-608648	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	-659017	+	TSC_hg19_v1_chr10_-_60936189 AK055418	182353	-	AL834339 NM_032439 TSC_hg19_v1_chr10_+_60936408 CR749429	182535	+	BC011268 AK054956 TSC_hg19_v1_chr10_+_60936573 AB384640 AM392743	182707	+	NM_001080512|BICC1|80114|bicaudal C homolog 1 (Drosophila)##AY726586|BICC1|80114|bicaudal C homolog 1 (Drosophila)##BC029815|TFAM|7019|transcription factor A, mitochondrial##AK312558|TFAM|7019|transcription factor A, mitochondrial##M62810|TFAM|7019|transcription factor A, mitochondrial##NM_003201|TFAM|7019|transcription factor A, mitochondrial##BC018628|TFAM|7019|transcription factor A, mitochondrial##BC104482|TFAM|7019|transcription factor A, mitochondrial##BC126366|TFAM|7019|transcription factor A, mitochondrial##EU279428|TFAM|7019|transcription factor A, mitochondrial##HQ258758|TFAM|7019|transcription factor A, mitochondrial##AB451241|TFAM|7019|transcription factor A, mitochondrial##AB451366|TFAM|7019|transcription factor A, mitochondrial##BT019658|TFAM|7019|transcription factor A, mitochondrial##BT019659|TFAM|7019|transcription factor A, mitochondrial##CR407653|TFAM|7019|transcription factor A, mitochondrial##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AL834339|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##NM_032439|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##CR749429|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##BC011268|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AK054956|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AM392743|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like	0.082027	0.0	
chr12	121322541	121322705	reg1016635.p1	3.973	+	AK074916 TSC_hg19_v1_chr12_-_121248688	-73940	-	NM_000017 TSC_hg19_v1_chr12_+_121163641 BC025963 AK300645 M26393 DQ892184 DQ895378 CU693082 AB527081	-158994	+	TSC_hg19_v1_chr12_+_121148260 AK126367 BC070088	-174350	+	AY169313 TSC_hg19_v1_chr12_-_121341927 BC073910 AK291161	19341	-	TSC_hg19_v1_chr12_-_121342070 AK223590 NM_139015	19511	-	TSC_hg19_v1_chr12_+_121416378 X71346 HM116541 HM116542 HM116543 HM116544 HM116545 HM116546 HM116547 HM116548 HM116549 HM116550 HM116551 X71347 HM116552 HM116557 HM116558 HM116559 HM116560 HM116561 HM116562 HM116563 AK298422	93774	+	AK074916|SPPL3|121665|signal peptide peptidase-like 3##NM_000017|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##BC025963|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##AK300645|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##M26393|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##DQ892184|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##DQ895378|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##AB527081|ACADS|35|acyl-CoA dehydrogenase, C-2 to C-3 short chain##AK126367|UNC119B|84747|unc-119 homolog B (C. elegans)##BC070088|UNC119B|84747|unc-119 homolog B (C. elegans)##AY169313|SPPL3|121665|signal peptide peptidase-like 3##BC073910|SPPL3|121665|signal peptide peptidase-like 3##AK291161|SPPL3|121665|signal peptide peptidase-like 3##AK223590|SPPL3|121665|signal peptide peptidase-like 3##NM_139015|SPPL3|121665|signal peptide peptidase-like 3##X71346|HNF1A|6927|HNF1 homeobox A##HM116541|HNF1A|6927|HNF1 homeobox A##HM116542|HNF1A|6927|HNF1 homeobox A##HM116543|HNF1A|6927|HNF1 homeobox A##HM116544|HNF1A|6927|HNF1 homeobox A##HM116545|HNF1A|6927|HNF1 homeobox A##HM116546|HNF1A|6927|HNF1 homeobox A##HM116547|HNF1A|6927|HNF1 homeobox A##HM116548|HNF1A|6927|HNF1 homeobox A##HM116549|HNF1A|6927|HNF1 homeobox A##X71347|HNF1A|6927|HNF1 homeobox A##HM116552|HNF1A|6927|HNF1 homeobox A##HM116557|HNF1A|6927|HNF1 homeobox A##HM116558|HNF1A|6927|HNF1 homeobox A##HM116559|HNF1A|6927|HNF1 homeobox A##HM116560|HNF1A|6927|HNF1 homeobox A##HM116561|HNF1A|6927|HNF1 homeobox A##HM116563|HNF1A|6927|HNF1 homeobox A##AK298422|HNF1A|6927|HNF1 homeobox A	0.997348	0.0	denovo_WM_7:-3:0.985
chr15	77703448	77703628	reg1002944.p1	3.973	+	AK091802 AX747193 TSC_hg19_v1_chr15_-_77472798	-230810	-	TSC_hg19_v1_chr15_-_77363522 NM_001168412 NM_005724 NM_198902	-339994	-	TSC_hg19_v1_chr15_-_77363454 BC011206 BC000704 AK001326	-340055	-	TSC_hg19_v1_chr15_-_77712437 NM_024776	9005	-	TSC_hg19_v1_chr15_+_77713043 AK297449 AK311376	9493	+	AK001601 TSC_hg19_v1_chr15_+_77713229 AK096546 AK223100 BC021959 NM_018200 AF146222 AL355736	9724	+	AK091802|PEAK1|79834|NKF3 kinase family member##NM_001168412|TSPAN3|10099|tetraspanin 3##NM_005724|TSPAN3|10099|tetraspanin 3##NM_198902|TSPAN3|10099|tetraspanin 3##BC011206|TSPAN3|10099|tetraspanin 3##BC000704|TSPAN3|10099|tetraspanin 3##AK001326|TSPAN3|10099|tetraspanin 3##NM_024776|PEAK1|79834|NKF3 kinase family member##AK297449|HMG20A|10363|high mobility group 20A##AK001601|HMG20A|10363|high mobility group 20A##AK096546|HMG20A|10363|high mobility group 20A##AK223100|HMG20A|10363|high mobility group 20A##BC021959|HMG20A|10363|high mobility group 20A##NM_018200|HMG20A|10363|high mobility group 20A##AF146222|HMG20A|10363|high mobility group 20A	0.990428	0.0	denovo_WM_7:-39:0.814
chr17	28099099	28099238	reg1009364.p1	3.973	+	TSC_hg19_v1_chr17_-_28088446 BC011636	-10710	-	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-149317	-	AK096431 NM_032854	-150776	-	AK302745 AK303060 NM_001145053 AK299608	157728	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	157965	-	NM_198529 BX648689 BC137519	169536	+	BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5	1.645969	0.0	denovo_WM_7:-37:0.570	denovo_WM_7:103:0.310	denovo_WM_7:104:0.310	denovo_WM_7:105:0.310
chr19	8305399	8305514	reg1017674.p1	3.973	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-31208	+	AB384635 AB053450 BC153882 NM_032447	-93081	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-187509	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	67753	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	80801	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	80830	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.0	0.0	
chr3	190192057	190192162	reg1008756.p1	3.973	+	CU687168 BC071780 AY358607 NM_207316	-24479	-	AK314955 NM_006580	-86449	+	BC012471 AF114837 AY358652 AF101051 AF134160 AK312866 AK225963 AK296934 TSC_hg19_v1_chr3_-_190040231 NM_021101	-151895	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	39768	+	NM_001146686	388355	-	AY398681 AY573933 BC128106 BC128107 NM_198184	738212	+	BC071780|TMEM207|131920|transmembrane protein 207##AY358607|TMEM207|131920|transmembrane protein 207##NM_207316|TMEM207|131920|transmembrane protein 207##AK314955|CLDN16|10686|claudin 16##NM_006580|CLDN16|10686|claudin 16##BC012471|CLDN1|9076|claudin 1##AF114837|CLDN1|9076|claudin 1##AY358652|CLDN1|9076|claudin 1##AF101051|CLDN1|9076|claudin 1##AF134160|CLDN1|9076|claudin 1##AK312866|CLDN1|9076|claudin 1##AK296934|CLDN1|9076|claudin 1##NM_021101|CLDN1|9076|claudin 1##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001146686|GMNC|647309|geminin coiled-coil domain containing##AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin	1.771107	0.0	denovo_WM_7:-8:0.739	denovo_WM_7:9:0.707
chr11	102150380	102150559	reg1014803.p2	3.972	+	NM_001195045 AK316116	-167262	+	TSC_hg19_v1_chr11_+_101981177 AK300414 NM_001130145 NM_001195044 NM_006106 BC038235 AB528588 AB567720 AB567721 AY316529	-169267	+	NM_001195005 NM_032930 AK094851 BC054869 TSC_hg19_v1_chr11_+_101918188 BC006128	-232286	+	NM_001165 NM_182962 TSC_hg19_v1_chr11_+_102188214 AF070674	37733	+	TSC_hg19_v1_chr11_+_102217944 AK303197	67460	+	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	67559	+	NM_001195045|YAP1|10413|Yes-associated protein 1##AK316116|YAP1|10413|Yes-associated protein 1##AK300414|YAP1|10413|Yes-associated protein 1##NM_001130145|YAP1|10413|Yes-associated protein 1##NM_001195044|YAP1|10413|Yes-associated protein 1##NM_006106|YAP1|10413|Yes-associated protein 1##BC038235|YAP1|10413|Yes-associated protein 1##AB567720|YAP1|10413|Yes-associated protein 1##AB567721|YAP1|10413|Yes-associated protein 1##AY316529|YAP1|10413|Yes-associated protein 1##NM_001195005|C11orf70|85016|chromosome 11 open reading frame 70##NM_032930|C11orf70|85016|chromosome 11 open reading frame 70##AK094851|C11orf70|85016|chromosome 11 open reading frame 70##BC054869|C11orf70|85016|chromosome 11 open reading frame 70##BC006128|C11orf70|85016|chromosome 11 open reading frame 70##NM_001165|BIRC3|330|baculoviral IAP repeat containing 3##NM_182962|BIRC3|330|baculoviral IAP repeat containing 3##AF070674|BIRC3|330|baculoviral IAP repeat containing 3##AK303197|BIRC2|329|baculoviral IAP repeat containing 2##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2	0.0	0.0	
chr11	63997650	63997754	reg1000335.p1	3.972	+	TSC_hg19_v1_chr11_+_63993745 NM_001128612 NM_001128613 NM_032344 AF370402 BC006129 AK308555	-3936	+	TSC_hg19_v1_chr11_-_63993653 BC005133 AY211494 AK026364 NM_001033678 NM_001160389 NM_001160390 NM_001160392 NM_031472	-4059	-	NM_001160393	-4362	-	BC044584 BC053947 NM_005528	50	+	TSC_hg19_v1_chr11_+_63998024 BC057849 BC010145 BC032137 AF036874 CU692210 BC051008	459	+	TSC_hg19_v1_chr11_+_64002055 NM_001243733 NM_003377 BC008818 DQ892633 DQ895870 DQ895872 U52819 U48801 AB590381 U43368 U43369	4437	+	NM_001128612|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##NM_001128613|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##NM_032344|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##BC006129|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##AK308555|NUDT22|84304|nudix (nucleoside diphosphate linked moiety X)-type motif 22##BC005133|TRPT1|83707|tRNA phosphotransferase 1##AY211494|TRPT1|83707|tRNA phosphotransferase 1##AK026364|TRPT1|83707|tRNA phosphotransferase 1##NM_001033678|TRPT1|83707|tRNA phosphotransferase 1##NM_001160389|TRPT1|83707|tRNA phosphotransferase 1##NM_001160390|TRPT1|83707|tRNA phosphotransferase 1##NM_001160392|TRPT1|83707|tRNA phosphotransferase 1##NM_031472|TRPT1|83707|tRNA phosphotransferase 1##NM_001160393|TRPT1|83707|tRNA phosphotransferase 1##BC044584|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC053947|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##NM_005528|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC057849|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC010145|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC032137|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##AF036874|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##BC051008|DNAJC4|3338|DnaJ (Hsp40) homolog, subfamily C, member 4##NM_001243733|VEGFB|7423|vascular endothelial growth factor B##NM_003377|VEGFB|7423|vascular endothelial growth factor B##BC008818|VEGFB|7423|vascular endothelial growth factor B##DQ892633|VEGFB|7423|vascular endothelial growth factor B##DQ895870|VEGFB|7423|vascular endothelial growth factor B##DQ895872|VEGFB|7423|vascular endothelial growth factor B##U52819|VEGFB|7423|vascular endothelial growth factor B##U48801|VEGFB|7423|vascular endothelial growth factor B##U43368|VEGFB|7423|vascular endothelial growth factor B##U43369|VEGFB|7423|vascular endothelial growth factor B	0.0	0.0	
chr1	212138493	212138608	reg1017394.p1	3.972	+	D86960 NM_014873 TSC_hg19_v1_chr1_-_212004119	-134420	-	BC034621 TSC_hg19_v1_chr1_-_212003681	-134802	-	BT019729 CU688108 AB527570 AY045701 Z29066 AK223353 AK225522 AK303092 TSC_hg19_v1_chr1_-_211848968 U11050 BC043502 BC065932 BC052807 NM_001204182 NM_001204183 NM_002497	-289642	-	AM392654 CU676544 BC030716 TSC_hg19_v1_chr1_-_212208866 BC033918 AK001363 AK022509 BC009918 BC020523 AK297225 AK001598 NM_001199809 NM_001199811 NM_001199812 NM_015434	70340	-	NM_016448 AK292343 TSC_hg19_v1_chr1_+_212209090 AK000742 AK303346	70464	+	BC033540 TSC_hg19_v1_chr1_+_212209112 AF345896	70568	+	D86960|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##NM_014873|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BC034621|LPGAT1|9926|lysophosphatidylglycerol acyltransferase 1##BT019729|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AY045701|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##Z29066|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK223353|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK225522|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AK303092|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##U11050|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC043502|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC065932|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##BC052807|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204182|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_001204183|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##NM_002497|NEK2|4751|NIMA (never in mitosis gene a)-related kinase 2##AM392654|INTS7|25896|integrator complex subunit 7##BC030716|INTS7|25896|integrator complex subunit 7##BC033918|INTS7|25896|integrator complex subunit 7##AK001363|INTS7|25896|integrator complex subunit 7##AK022509|INTS7|25896|integrator complex subunit 7##BC009918|INTS7|25896|integrator complex subunit 7##BC020523|INTS7|25896|integrator complex subunit 7##AK297225|INTS7|25896|integrator complex subunit 7##AK001598|INTS7|25896|integrator complex subunit 7##NM_001199809|INTS7|25896|integrator complex subunit 7##NM_001199811|INTS7|25896|integrator complex subunit 7##NM_001199812|INTS7|25896|integrator complex subunit 7##NM_015434|INTS7|25896|integrator complex subunit 7##NM_016448|DTL|51514|denticleless homolog (Drosophila)##AK292343|DTL|51514|denticleless homolog (Drosophila)##AK000742|DTL|51514|denticleless homolog (Drosophila)##AK303346|DTL|51514|denticleless homolog (Drosophila)##BC033540|DTL|51514|denticleless homolog (Drosophila)##AF345896|DTL|51514|denticleless homolog (Drosophila)	1.062657	0.0	denovo_WM_7:-16:0.454	denovo_WM_7:-17:0.467
chr13	76123465	76123645	reg1016690.p1	3.972	+	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	-11577	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	-67217	-	CR749622 TSC_hg19_v1_chr13_-_75901948	-221633	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	369	+	AF330045 NM_005358	71014	+	TSC_hg19_v1_chr13_+_76210470 AK092052 AX747335	86915	+	AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##AF330045|LMO7|4008|LIM domain 7##NM_005358|LMO7|4008|LIM domain 7##AK092052|LMO7|4008|LIM domain 7	0.0	0.0	
chr22	28281217	28281339	reg1012723.p1	3.972	+	TSC_hg19_v1_chr22_-_28197481 NM_002430 X82209	-83801	-	TSC_hg19_v1_chr22_+_27068725 AK026502	-1212538	+	TSC_hg19_v1_chr22_+_27053392 AB263414 AB263415 AB263416 AB263417 AK098833	-1227806	+	TSC_hg19_v1_chr22_-_28315184 AB528209 CU013141 CU013429 CU689164 AK302367	33896	-	TSC_hg19_v1_chr22_-_28315203 BC031427	33929	-	TSC_hg19_v1_chr22_-_28315245 BC018704 D30037 AK313064 CR456541 NM_012399	33986	-	NM_002430|MN1|4330|meningioma (disrupted in balanced translocation) 1##X82209|MN1|4330|meningioma (disrupted in balanced translocation) 1##AK026502|LOC100507637|100507637|uncharacterized LOC100507637##AB263414|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AB263415|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AB263416|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AB263417|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##AK098833|MIAT|440823|myocardial infarction associated transcript (non-protein coding)##CU013141|PITPNB|23760|phosphatidylinositol transfer protein, beta##CU013429|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK302367|PITPNB|23760|phosphatidylinositol transfer protein, beta##BC031427|PITPNB|23760|phosphatidylinositol transfer protein, beta##BC018704|PITPNB|23760|phosphatidylinositol transfer protein, beta##D30037|PITPNB|23760|phosphatidylinositol transfer protein, beta##AK313064|PITPNB|23760|phosphatidylinositol transfer protein, beta##CR456541|PITPNB|23760|phosphatidylinositol transfer protein, beta##NM_012399|PITPNB|23760|phosphatidylinositol transfer protein, beta	1.992877	0.0	
chr2	42329028	42329124	reg1006237.p1	3.972	+	AB528999 TSC_hg19_v1_chr2_+_42275979	-53115	+	TSC_hg19_v1_chr2_+_42275160 NM_138370	-53944	+	AK124893 NM_001242815	-148134	-	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	67499	+	AF127788 BT007371 CR542208 CU675543 DQ890566 DQ893729 TSC_hg19_v1_chr2_-_42588354 AB007618 BC005251 BC007095 NM_004718	259257	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	391482	-	NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##AK124893|LOC400950|400950|uncharacterized LOC400950##NM_001242815|LOC400950|400950|uncharacterized LOC400950##NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4##AF127788|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BT007371|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##CR542208|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ890566|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ893729|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB007618|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC005251|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC007095|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##NM_004718|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3	0.0	0.0	
chr2	60539815	60539931	reg1014213.p1	3.972	+	CU691100 TSC_hg19_v1_chr2_-_58468461 AK225147 BC037570 AK001197 BC009042 BC041627 AK297736 BC054517 AK309671 NM_001114636 NM_018062	-2071391	-	TSC_hg19_v1_chr2_+_58273948 AK058199 AK223540 BC021663	-2265885	+	AK295193 TSC_hg19_v1_chr2_+_58273765 NM_001130480 NM_001130482 NM_001130483 AK296611 NM_006296 BC027854 AB000450 AJ512204 AY228367 AY228368 AY228370 AY228371 AY228372 NM_001130481 AY228369	-2266119	+	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	240649	-	AF080216 TSC_hg19_v1_chr2_-_60780784	240905	-	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	443611	+	AK225147|FANCL|55120|Fanconi anemia, complementation group L##BC037570|FANCL|55120|Fanconi anemia, complementation group L##AK001197|FANCL|55120|Fanconi anemia, complementation group L##BC009042|FANCL|55120|Fanconi anemia, complementation group L##BC041627|FANCL|55120|Fanconi anemia, complementation group L##AK297736|FANCL|55120|Fanconi anemia, complementation group L##BC054517|FANCL|55120|Fanconi anemia, complementation group L##AK309671|FANCL|55120|Fanconi anemia, complementation group L##NM_001114636|FANCL|55120|Fanconi anemia, complementation group L##NM_018062|FANCL|55120|Fanconi anemia, complementation group L##AK058199|VRK2|7444|vaccinia related kinase 2##AK223540|VRK2|7444|vaccinia related kinase 2##BC021663|VRK2|7444|vaccinia related kinase 2##AK295193|VRK2|7444|vaccinia related kinase 2##NM_001130480|VRK2|7444|vaccinia related kinase 2##NM_001130482|VRK2|7444|vaccinia related kinase 2##NM_001130483|VRK2|7444|vaccinia related kinase 2##AK296611|VRK2|7444|vaccinia related kinase 2##NM_006296|VRK2|7444|vaccinia related kinase 2##BC027854|VRK2|7444|vaccinia related kinase 2##AB000450|VRK2|7444|vaccinia related kinase 2##AJ512204|VRK2|7444|vaccinia related kinase 2##AY228367|VRK2|7444|vaccinia related kinase 2##AY228368|VRK2|7444|vaccinia related kinase 2##AY228370|VRK2|7444|vaccinia related kinase 2##AY228371|VRK2|7444|vaccinia related kinase 2##AY228372|VRK2|7444|vaccinia related kinase 2##NM_001130481|VRK2|7444|vaccinia related kinase 2##AY228369|VRK2|7444|vaccinia related kinase 2##AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma	1.959896	0.0	denovo_WM_7:-45:0.616	denovo_WM_7:-60:0.868
chr3	170066595	170066693	reg1008860.p1	3.972	+	TSC_hg19_v1_chr3_+_169940250 L33881 AK315342 AB590674 AB451443	-126279	+	TSC_hg19_v1_chr3_+_169940223 BC022016	-126415	+	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	-126427	+	TSC_hg19_v1_chr3_+_170075455 NM_001145098 NM_005414	8825	+	TSC_hg19_v1_chr3_+_170075508 BC059386	8862	+	AK300053 TSC_hg19_v1_chr3_+_170075522 BC053554	8912	+	L33881|PRKCI|5584|protein kinase C, iota##AK315342|PRKCI|5584|protein kinase C, iota##AB451443|PRKCI|5584|protein kinase C, iota##BC022016|PRKCI|5584|protein kinase C, iota##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota##NM_001145098|SKIL|6498|SKI-like oncogene##NM_005414|SKIL|6498|SKI-like oncogene##BC059386|SKIL|6498|SKI-like oncogene##AK300053|SKIL|6498|SKI-like oncogene	1.949334	0.0	denovo_WM_7:4:0.842	denovo_WM_7:-10:0.852
chr4	148776809	148776924	reg1013826.p2	3.972	+	AB050785 BC128055 NM_024605 BC126899 BC109029 BC109030	-123409	+	TSC_hg19_v1_chr4_+_148653238 AK123785	-123615	+	BC021250 TSC_hg19_v1_chr4_-_148605287 AK096703 BC064403 NM_138364 AK292904	-171602	-	TSC_hg19_v1_chr4_-_149357955 AB587357	581116	-	TSC_hg19_v1_chr4_-_149363305 BC111758	586473	-	TSC_hg19_v1_chr4_-_149363539 AJ315514 M16801 AK304318 NM_000901 NM_001166104	586718	-	AB050785|ARHGAP10|79658|Rho GTPase activating protein 10##BC128055|ARHGAP10|79658|Rho GTPase activating protein 10##NM_024605|ARHGAP10|79658|Rho GTPase activating protein 10##BC126899|ARHGAP10|79658|Rho GTPase activating protein 10##BC109029|ARHGAP10|79658|Rho GTPase activating protein 10##BC109030|ARHGAP10|79658|Rho GTPase activating protein 10##AK123785|ARHGAP10|79658|Rho GTPase activating protein 10##BC021250|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK096703|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC064403|PRMT10|90826|protein arginine methyltransferase 10 (putative)##NM_138364|PRMT10|90826|protein arginine methyltransferase 10 (putative)##AK292904|PRMT10|90826|protein arginine methyltransferase 10 (putative)##BC111758|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AJ315514|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##M16801|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##AK304318|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_000901|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2##NM_001166104|NR3C2|4306|nuclear receptor subfamily 3, group C, member 2	0.998396	0.0	
chr8	128807831	128807997	reg1016126.p1	3.972	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	-1131	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	-59424	+	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	-59589	+	AB042405 NM_031415	1991219	-	BC003599 TSC_hg19_v1_chr8_-_130951934	2144001	-	TSC_hg19_v1_chr8_-_130951998 BC017297 NM_016623 AK130372	2144092	-	M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AB042405|GSDMC|56169|gasdermin C##NM_031415|GSDMC|56169|gasdermin C##BC003599|FAM49B|51571|family with sequence similarity 49, member B##BC017297|FAM49B|51571|family with sequence similarity 49, member B##NM_016623|FAM49B|51571|family with sequence similarity 49, member B##AK130372|FAM49B|51571|family with sequence similarity 49, member B	0.0	0.0	
chr8	66864447	66864567	reg1010826.p2	3.972	+	TSC_hg19_v1_chr8_-_66754300 AK292680	-110215	-	NM_001242318	-110539	-	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	-163256	-	NM_033105 BC016742 AF368276 AL133660	69312	+	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	174833	+	BC002599 BC011031 AK075431 NM_000756	226260	-	AK292680|PDE7A|5150|phosphodiesterase 7A##NM_001242318|PDE7A|5150|phosphodiesterase 7A##HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone	0.994672	0.0	denovo_WM_7:50:0.343	denovo_WM_7:51:0.481
chr9	117197204	117197286	reg1013494.p2	3.972	+	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	-36494	-	AY703040 BC055285 NM_030767	-40561	-	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	-46955	-	AL110228 NM_001083885	68228	-	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	70485	-	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	152793	+	AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor##AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##AL110228|DFNB31|25861|deafness, autosomal recessive 31##NM_001083885|DFNB31|25861|deafness, autosomal recessive 31##BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1	0.0	0.0	
chr10	5895531	5895711	reg1006422.p4	3.971	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-40186	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-40355	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-122949	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	36235	-	TSC_hg19_v1_chr10_+_5932205 AK095343	36578	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	36590	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.99834	0.0	denovo_WM_7:-73:0.457	denovo_WM_7:-74:0.457
chr10	975987	976167	reg1010887.p1	3.971	+	BC131630 BC152443 D86971 NM_015155	-44380	-	TSC_hg19_v1_chr10_-_735609 AB023151 BC063313 NM_014974	-240386	-	AK096000 BC144473 AK296168 TSC_hg19_v1_chr10_+_696010 AK096013	-280126	+	TSC_hg19_v1_chr10_-_1034270 AK126769	58192	-	AK130873 TSC_hg19_v1_chr10_-_1034282	58222	-	TSC_hg19_v1_chr10_+_1034348 AK001552 NM_012341	58264	+	BC131630|LARP4B|23185|La ribonucleoprotein domain family, member 4B##BC152443|LARP4B|23185|La ribonucleoprotein domain family, member 4B##D86971|LARP4B|23185|La ribonucleoprotein domain family, member 4B##NM_015155|LARP4B|23185|La ribonucleoprotein domain family, member 4B##AB023151|DIP2C|22982|DIP2 disco-interacting protein 2 homolog C (Drosophila)##BC063313|DIP2C|22982|DIP2 disco-interacting protein 2 homolog C (Drosophila)##NM_014974|DIP2C|22982|DIP2 disco-interacting protein 2 homolog C (Drosophila)##AK096000|C10orf108|414235|chromosome 10 open reading frame 108##AK296168|C10orf108|414235|chromosome 10 open reading frame 108##AK096013|C10orf108|414235|chromosome 10 open reading frame 108##AK130873|LOC100288619|100288619|uncharacterized LOC100288619##AK001552|GTPBP4|23560|GTP binding protein 4##NM_012341|GTPBP4|23560|GTP binding protein 4	0.0	0.0	
chr11	118707882	118707956	reg1013590.p1	3.971	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-45985	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-46040	-	TSC_hg19_v1_chr11_-_118661860 BC026228	-46060	-	AK291512 NM_001716 BC110352 X68149 AB464488	46641	+	NM_032966 X68829	56181	+	AB094091 NM_182557	73693	-	NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC026228|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like	1.12671	0.0	
chr12	49737578	49737672	reg1012176.p2	3.971	+	BC110812 AF466366 NM_001008223	-6662	-	NM_001100620 NM_005480 TSC_hg19_v1_chr12_+_49717037 AK315211 AK296811 AK309716 AK310709 AK299302 BC032583 BC018627 BC011597	-20589	+	NM_006262 TSC_hg19_v1_chr12_+_49688929 BC032703 AB528454 CU689492 DQ893358 DQ896677	-48680	+	TSC_hg19_v1_chr12_+_49740718 AK055747	3078	+	BC033236 NM_024902	3415	+	TSC_hg19_v1_chr12_+_49760679 AK095582 NM_023071	23064	+	BC110812|C1QL4|338761|complement component 1, q subcomponent-like 4##AF466366|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001008223|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001100620|TROAP|10024|trophinin associated protein (tastin)##NM_005480|TROAP|10024|trophinin associated protein (tastin)##AK315211|TROAP|10024|trophinin associated protein (tastin)##AK296811|TROAP|10024|trophinin associated protein (tastin)##AK309716|TROAP|10024|trophinin associated protein (tastin)##AK310709|TROAP|10024|trophinin associated protein (tastin)##AK299302|TROAP|10024|trophinin associated protein (tastin)##BC032583|TROAP|10024|trophinin associated protein (tastin)##BC018627|TROAP|10024|trophinin associated protein (tastin)##BC011597|TROAP|10024|trophinin associated protein (tastin)##NM_006262|PRPH|5630|peripherin##BC032703|PRPH|5630|peripherin##DQ893358|PRPH|5630|peripherin##DQ896677|PRPH|5630|peripherin##AK055747|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##BC033236|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##NM_024902|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##AK095582|SPATS2|65244|spermatogenesis associated, serine-rich 2##NM_023071|SPATS2|65244|spermatogenesis associated, serine-rich 2	2.806322	0.0	denovo_WM_7:-67:0.841	denovo_WM_7:-82:0.834
chr5	16556194	16556290	reg1011393.p1	3.971	+	NM_019000	-47136	-	TSC_hg19_v1_chr5_-_16465884 BC010545 BC008752 NM_033414 AY046059	-90366	-	NM_001102562	-376346	-	TSC_hg19_v1_chr5_-_16617097 BC053326 AK025808 NM_001034850	60883	-	TSC_hg19_v1_chr5_-_16738346 AK295736	182178	-	AK316138 TSC_hg19_v1_chr5_-_16742338	186095	-	NM_019000|FAM134B|54463|family with sequence similarity 134, member B##BC010545|ZNF622|90441|zinc finger protein 622##BC008752|ZNF622|90441|zinc finger protein 622##NM_033414|ZNF622|90441|zinc finger protein 622##AY046059|ZNF622|90441|zinc finger protein 622##NM_001102562|MARCH11|441061|membrane-associated ring finger (C3HC4) 11##BC053326|FAM134B|54463|family with sequence similarity 134, member B##AK025808|FAM134B|54463|family with sequence similarity 134, member B##NM_001034850|FAM134B|54463|family with sequence similarity 134, member B##AK295736|MYO10|4651|myosin X##AK316138|MYO10|4651|myosin X	0.99062	0.0	denovo_WM_7:28:0.243	denovo_WM_7:34:0.573
chr6	16905487	16905634	reg1011435.p2	3.971	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	-143863	-	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-666709	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-762250	+	NM_001190766	196928	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	376294	+	NM_001143941	376734	+	BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24	0.975072	0.0	denovo_WM_7:104:0.940
chr12	8125290	8125416	reg1010304.p2	3.970	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-36587	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-81585	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-99887	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	60137	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	93600	-	TSC_hg19_v1_chr12_-_8219032 U62027	93663	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	1.850896	0.0	denovo_WM_7:65:0.331	denovo_WM_7:66:0.331	denovo_WM_7:67:0.331	denovo_WM_7:-98:0.235	denovo_WM_7:-100:0.535
chr14	67751184	67751306	reg1012100.p1	3.970	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	-43082	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	-95102	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-776020	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	75321	-	TSC_hg19_v1_chr14_+_67827035 NM_004094	75788	+	TSC_hg19_v1_chr14_+_67827053 AK312442 BX161521 AK297244	75805	+	BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_004094|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##AK312442|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BX161521|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##AK297244|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa	2.990244	0.0	denovo_WM_7:-90:0.835
chr15	31593977	31594139	reg1012873.p2	3.970	+	NM_001243538	-71009	-	GQ502181 HM135791 NM_001252020	-140630	-	AF071787 BC033627 BC005892 BC017849 HM135790 BC058286 BC070356 NM_001252024 NM_001252030 NM_002420	-200141	-	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	25280	+	AJ430383 NM_130901	353483	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	568771	-	NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF071787|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC033627|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC005892|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC017849|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135790|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC058286|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC070356|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252024|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252030|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_002420|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A	1.871427	0.0	denovo_WM_7:5:0.434	denovo_WM_7:6:0.452	denovo_WM_7:-58:0.846
chr15	48617645	48617758	reg1007107.p1	3.970	+	NM_000338 NM_001184832 AK129998 AK298312 BC020860	-119204	+	BX537772 NM_001145668 AK295375	-133788	+	TSC_hg19_v1_chr15_-_48470503 AB037762 BC152420 BC152451 BC068523 AK023133 NM_016132	-147184	-	TSC_hg19_v1_chr15_+_48623625 NM_001025248 NM_001025249 AK000629 BC070339 BC110377 AK298464 U90223 AB528727	5963	+	TSC_hg19_v1_chr15_+_48624363 AK291515 NM_001948 AK312122 U31930 U62891 L11877 AB049113 M89913 DQ891191 DQ894375 CR541720 CR541781	6700	+	TSC_hg19_v1_chr15_-_48937070 L13923	319382	-	NM_000338|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##NM_001184832|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK129998|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AK298312|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##BX537772|CTXN2|399697|cortexin 2##NM_001145668|CTXN2|399697|cortexin 2##AK295375|SLC12A1|6557|solute carrier family 12 (sodium/potassium/chloride transporters), member 1##AB037762|MYEF2|50804|myelin expression factor 2##BC152420|MYEF2|50804|myelin expression factor 2##BC152451|MYEF2|50804|myelin expression factor 2##BC068523|MYEF2|50804|myelin expression factor 2##AK023133|MYEF2|50804|myelin expression factor 2##NM_016132|MYEF2|50804|myelin expression factor 2##NM_001025248|DUT|1854|deoxyuridine triphosphatase##NM_001025249|DUT|1854|deoxyuridine triphosphatase##AK000629|DUT|1854|deoxyuridine triphosphatase##BC070339|DUT|1854|deoxyuridine triphosphatase##BC110377|DUT|1854|deoxyuridine triphosphatase##AK298464|DUT|1854|deoxyuridine triphosphatase##U90223|DUT|1854|deoxyuridine triphosphatase##AK291515|DUT|1854|deoxyuridine triphosphatase##NM_001948|DUT|1854|deoxyuridine triphosphatase##AK312122|DUT|1854|deoxyuridine triphosphatase##U31930|DUT|1854|deoxyuridine triphosphatase##U62891|DUT|1854|deoxyuridine triphosphatase##L11877|DUT|1854|deoxyuridine triphosphatase##AB049113|DUT|1854|deoxyuridine triphosphatase##M89913|DUT|1854|deoxyuridine triphosphatase##DQ891191|DUT|1854|deoxyuridine triphosphatase##DQ894375|DUT|1854|deoxyuridine triphosphatase##CR541720|DUT|1854|deoxyuridine triphosphatase##CR541781|DUT|1854|deoxyuridine triphosphatase##L13923|FBN1|2200|fibrillin 1	0.0	0.0	
chr16	8106371	8106438	reg1012658.p1	3.970	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	-723654	+	AK001027 NM_001142334	-1282595	+	TSC_hg19_v1_chr16_+_6533765 BC033885	-1572629	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	609136	+	TSC_hg19_v1_chr16_+_8768473 NM_020686 BX537362 AK096146 BC031413 BC015628	662058	+	NM_000663 TSC_hg19_v1_chr16_+_8806841 BC013965	700431	+	AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22##NM_020686|ABAT|18|4-aminobutyrate aminotransferase##BX537362|ABAT|18|4-aminobutyrate aminotransferase##AK096146|ABAT|18|4-aminobutyrate aminotransferase##BC031413|ABAT|18|4-aminobutyrate aminotransferase##BC015628|ABAT|18|4-aminobutyrate aminotransferase##NM_000663|ABAT|18|4-aminobutyrate aminotransferase##BC013965|ABAT|18|4-aminobutyrate aminotransferase	0.0	0.0	
chr16	88658229	88658409	reg1001976.p2	3.970	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-21450	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	-21491	+	AK300254 AK302716 TSC_hg19_v1_chr16_+_88636810	-21509	+	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	46684	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	59130	-	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	71198	-	BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18##AK300254|ZC3H18|124245|zinc finger CCCH-type containing 18##AK302716|ZC3H18|124245|zinc finger CCCH-type containing 18##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase	0.0	0.0	
chr1	8663932	8664112	reg1015537.p1	3.970	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-180005	-	NM_001080397	-279633	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-577624	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	213570	-	GU170215 NM_001201483	267612	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	274685	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	1.071291	0.0	denovo_WM_7:-13:0.505	denovo_WM_7:-16:0.434
chr7	98477481	98477660	reg1007395.p1	3.970	+	TSC_hg19_v1_chr7_+_98476154 AF076974 NM_001244580 NM_003496 AF110377	-1420	+	TSC_hg19_v1_chr7_-_98467663 NM_001134450 NM_001134451 NM_152913 AY358583	-9894	-	AK225783 AK295543 BC030793 TSC_hg19_v1_chr7_-_98467638	-9943	-	AF199364 AB385491 AF464850 TSC_hg19_v1_chr7_-_98741471	263853	-	TSC_hg19_v1_chr7_-_98741637 BC136804 BC144414	264060	-	TSC_hg19_v1_chr7_-_98741752 AB046845 BC152468 NM_001199847 NM_020429 NM_181349	264179	-	AF076974|TRRAP|8295|transformation/transcription domain-associated protein##NM_001244580|TRRAP|8295|transformation/transcription domain-associated protein##NM_003496|TRRAP|8295|transformation/transcription domain-associated protein##AF110377|TRRAP|8295|transformation/transcription domain-associated protein##NM_001134450|TMEM130|222865|transmembrane protein 130##NM_001134451|TMEM130|222865|transmembrane protein 130##NM_152913|TMEM130|222865|transmembrane protein 130##AY358583|TMEM130|222865|transmembrane protein 130##AK225783|TMEM130|222865|transmembrane protein 130##AK295543|TMEM130|222865|transmembrane protein 130##BC030793|TMEM130|222865|transmembrane protein 130##AF199364|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##AF464850|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC136804|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC144414|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##AB046845|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##BC152468|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##NM_001199847|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##NM_020429|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1##NM_181349|SMURF1|57154|SMAD specific E3 ubiquitin protein ligase 1	0.0	0.0	
chrX	70853101	70853177	reg1016109.p1	3.970	+	AY242128 CU689880 DQ892460 DQ895673 BC034403 AF469635 AK313679 NM_001142797 NM_001504 X95876	-14807	-	NM_052957	-55266	+	TSC_hg19_v1_chrX_+_70765496 AL050366	-87617	+	NM_001145139 NM_001145140	84995	-	NM_001145139 NM_001145140	130000	+	TSC_hg19_v1_chrX_+_71130694 NM_001013627	277639	+	AY242128|CXCR3|2833|chemokine (C-X-C motif) receptor 3##DQ892460|CXCR3|2833|chemokine (C-X-C motif) receptor 3##DQ895673|CXCR3|2833|chemokine (C-X-C motif) receptor 3##BC034403|CXCR3|2833|chemokine (C-X-C motif) receptor 3##AF469635|CXCR3|2833|chemokine (C-X-C motif) receptor 3##AK313679|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_001142797|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_001504|CXCR3|2833|chemokine (C-X-C motif) receptor 3##X95876|CXCR3|2833|chemokine (C-X-C motif) receptor 3##NM_052957|ACRC|93953|acidic repeat containing##AL050366|OGT|8473|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001145139|CXorf49B|100132994|chromosome X open reading frame 49B##NM_001145140|CXorf49|100130361|chromosome X open reading frame 49##NM_001013627|NHSL2|340527|NHS-like 2	0.0	0.0	
chr1	147522158	147522224	reg1015105.p1	3.969	+	NM_001097616	-96625	+	TSC_hg19_v1_chr1_+_147400563 BC146880 AK316371 BC003187 AB528816 DQ890650 DQ893830 BT006679	-121590	+	TSC_hg19_v1_chr1_+_147400532 AK021758 NM_016334 AL133020 AY358966 AB097024 AB097025 AK223223 AK299995 AK302266 BC067816 AF132947 U78723	-121669	+	AF419617 NM_001101663	87889	-	BX648497 TSC_hg19_v1_chr1_-_147624379	102154	-	TSC_hg19_v1_chr1_-_147624593 BC136292 NM_183372	102325	-	NM_001097616|GPR89C|728932|G protein-coupled receptor 89C##BC146880|GPR89A|653519|G protein-coupled receptor 89A##AK316371|GPR89A|653519|G protein-coupled receptor 89A##BC003187|GPR89A|653519|G protein-coupled receptor 89A##DQ890650|GPR89B|51463|G protein-coupled receptor 89B##DQ893830|GPR89A|653519|G protein-coupled receptor 89A##BT006679|GPR89A|653519|G protein-coupled receptor 89A##AK021758|GPR89A|653519|G protein-coupled receptor 89A##NM_016334|GPR89B|51463|G protein-coupled receptor 89B##AL133020|GPR89B|51463|G protein-coupled receptor 89B##AY358966|GPR89A|653519|G protein-coupled receptor 89A##AB097024|GPR89A|653519|G protein-coupled receptor 89A##AB097025|GPR89A|653519|G protein-coupled receptor 89A##AK223223|GPR89A|653519|G protein-coupled receptor 89A##AK299995|GPR89A|653519|G protein-coupled receptor 89A##AK302266|GPR89B|51463|G protein-coupled receptor 89B##BC067816|GPR89A|653519|G protein-coupled receptor 89A##AF132947|GPR89A|653519|G protein-coupled receptor 89A##U78723|GPR89B|51463|G protein-coupled receptor 89B##AF419617|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_001101663|NBPF24|728912|neuroblastoma breakpoint family, member 24##BX648497|NBPF11|200030|neuroblastoma breakpoint family, member 11##BC136292|NBPF11|200030|neuroblastoma breakpoint family, member 11##NM_183372|NBPF11|200030|neuroblastoma breakpoint family, member 11	0.020296	0.0	
chr19	10075496	10075620	reg1015202.p1	3.969	+	TSC_hg19_v1_chr19_-_10047187 CU679906 DQ891083 DQ894265 AF131839 BC011361 NM_058164	-28434	-	BC031971 TSC_hg19_v1_chr19_+_9946188	-129394	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	-129607	+	TSC_hg19_v1_chr19_-_10121181 AF177941 NM_015719	45585	-	DQ426888 AF229845 NM_015725	48334	+	TSC_hg19_v1_chr19_+_10196791 NM_018381	121228	+	DQ891083|OLFM2|93145|olfactomedin 2##DQ894265|OLFM2|93145|olfactomedin 2##AF131839|OLFM2|93145|olfactomedin 2##BC011361|OLFM2|93145|olfactomedin 2##NM_058164|OLFM2|93145|olfactomedin 2##BC031971|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF177941|COL5A3|50509|collagen, type V, alpha 3##NM_015719|COL5A3|50509|collagen, type V, alpha 3##AF229845|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_015725|RDH8|50700|retinol dehydrogenase 8 (all-trans)##NM_018381|C19orf66|55337|chromosome 19 open reading frame 66	2.995096	0.0	denovo_WM_7:-4:0.755	denovo_WM_7:-5:0.212	denovo_WM_7:10:0.844	denovo_WM_7:-19:0.662	denovo_WM_7:-20:0.322
chr19	2739116	2739254	reg1010981.p1	3.969	+	TSC_hg19_v1_chr19_-_2721362 BC030660 NM_145173	-17811	-	AK124445 TSC_hg19_v1_chr19_-_2717420	-21836	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	-36443	-	TSC_hg19_v1_chr19_-_2740007 BC005869	819	-	TSC_hg19_v1_chr19_-_2740016 AK302600 BC020571 AK002044	843	-	TSC_hg19_v1_chr19_-_2740065 NM_144564 NM_213568	882	-	BC030660|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1##NM_145173|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC005869|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK302600|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##BC020571|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##AK002044|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##NM_144564|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3##NM_213568|SLC39A3|29985|solute carrier family 39 (zinc transporter), member 3	0.99912	0.0	
chr5	148931180	148931354	reg1013990.p1	3.969	+	TSC_hg19_v1_chr5_-_148931006 NM_001025105 NM_001892	-261	-	TSC_hg19_v1_chr5_-_148930950 AK294942	-301	-	AF218004 TSC_hg19_v1_chr5_-_148930935 AK303794 BC021971 BC025371 BC007246	-343	-	AK300559 AK316002 BC041325 NM_001001669	29817	+	BC132971 BC132973 BC144251 NM_001172698 NM_133263 TSC_hg19_v1_chr5_+_149109839	178560	+	TSC_hg19_v1_chr5_+_149109872 AY188949 AY188950 AF468496 AF468497 AY188947 AY188948 AK095391	178609	+	NM_001025105|CSNK1A1|1452|casein kinase 1, alpha 1##NM_001892|CSNK1A1|1452|casein kinase 1, alpha 1##AK294942|CSNK1A1|1452|casein kinase 1, alpha 1##AF218004|CSNK1A1|1452|casein kinase 1, alpha 1##AK303794|CSNK1A1|1452|casein kinase 1, alpha 1##BC021971|CSNK1A1|1452|casein kinase 1, alpha 1##BC025371|CSNK1A1|1452|casein kinase 1, alpha 1##BC007246|CSNK1A1|1452|casein kinase 1, alpha 1##AK300559|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##AK316002|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##BC041325|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##NM_001001669|ARHGEF37|389337|Rho guanine nucleotide exchange factor (GEF) 37##BC132971|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC132973|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##BC144251|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_001172698|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##NM_133263|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188949|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188950|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468496|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AF468497|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188947|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AY188948|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta##AK095391|PPARGC1B|133522|peroxisome proliferator-activated receptor gamma, coactivator 1 beta	0.0	0.0	
chr8	9008246	9008336	reg1013513.p1	3.969	+	TSC_hg19_v1_chr8_-_9008167 BC043388 AK024067 NM_024607	-113	-	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	-147786	+	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	-147926	+	TSC_hg19_v1_chr8_-_9009055 AK096119 NM_001201329	809	-	TSC_hg19_v1_chr8_+_9413421 BC098394	405114	+	TSC_hg19_v1_chr8_+_9413423 AK302031	405132	+	BC043388|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK024067|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_024607|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK096119|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##NM_001201329|PPP1R3B|79660|protein phosphatase 1, regulatory subunit 3B##BC098394|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase##AK302031|TNKS|8658|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	0.0	0.0	
chr15	34659856	34659965	reg1010332.p1	3.968	+	AF529233 TSC_hg19_v1_chr15_-_34659398 BC144236 AK290273 AK308910 AL832237 BC092463 NM_153613 BC048430 AY734233 AF542964	-330	-	AF482429 NM_175741 BC114518 BC114567 BC033392 AK098568	-21782	+	BC008886 TSC_hg19_v1_chr15_-_34635355 BC063023 AB043104 NM_018648	-24575	-	BC032774 BC093673 BC104800 BC143254 AK097551 NM_181077	22035	-	BC032774 BC093673 BC104800 BC143254 AK097551 NM_001023567	168256	-	BX647673 TSC_hg19_v1_chr15_-_34875067	215159	-	AF529233|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##BC144236|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AK290273|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AK308910|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AL832237|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##BC092463|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##NM_153613|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##BC048430|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AY734233|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AF542964|LPCAT4|254531|lysophosphatidylcholine acyltransferase 4##AF482429|C15orf55|256646|chromosome 15 open reading frame 55##NM_175741|C15orf55|256646|chromosome 15 open reading frame 55##BC114518|C15orf55|256646|chromosome 15 open reading frame 55##BC114567|C15orf55|256646|chromosome 15 open reading frame 55##BC033392|C15orf55|256646|chromosome 15 open reading frame 55##AK098568|C15orf55|256646|chromosome 15 open reading frame 55##BC008886|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##BC063023|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##AB043104|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##NM_018648|NOP10|55505|NOP10 ribonucleoprotein homolog (yeast)##BC032774|GOLGA8A|23015|golgin A8 family, member A##BC093673|GOLGA8A|23015|golgin A8 family, member A##BC104800|GOLGA8A|23015|golgin A8 family, member A##BC143254|GOLGA8B|440270|golgin A8 family, member B##AK097551|GOLGA8B|440270|golgin A8 family, member B##NM_181077|GOLGA8A|23015|golgin A8 family, member A##BC032774|GOLGA8A|23015|golgin A8 family, member A##BC093673|GOLGA8A|23015|golgin A8 family, member A##BC104800|GOLGA8A|23015|golgin A8 family, member A##BC143254|GOLGA8B|440270|golgin A8 family, member B##AK097551|GOLGA8B|440270|golgin A8 family, member B##NM_001023567|GOLGA8B|440270|golgin A8 family, member B##BX647673|GOLGA8B|440270|golgin A8 family, member B	0.0	0.043193	
chr16	30300020	30300150	reg1014856.p1	3.968	+	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-89517	+	BC022832 NM_001031827 NM_001039182	-94459	-	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	-94892	+	TSC_hg19_v1_chr16_-_30346695 AK289905 BC063703	46614	-	BC013854 NM_001243646	66169	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	66515	-	AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK289905|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC063703|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC013854|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_001243646|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2	0.0	0.0	
chr17	42927201	42927364	reg1008293.p2	3.968	+	BC020667 NM_016438	-2004	+	NM_001080383	-19104	-	NM_005497 TSC_hg19_v1_chr17_-_42907633	-19642	-	AK128148 AK225335 TSC_hg19_v1_chr17_-_42976764 AK293108 BC002360	49468	-	TSC_hg19_v1_chr17_-_42976775 AK302828 D21163	49500	-	TSC_hg19_v1_chr17_-_42976800 AK296367 AK297392 AK316098	49526	-	BC020667|HIGD1B|51751|HIG1 hypoxia inducible domain family, member 1B##NM_016438|HIGD1B|51751|HIG1 hypoxia inducible domain family, member 1B##NM_001080383|GJC1|10052|gap junction protein, gamma 1, 45kDa##NM_005497|GJC1|10052|gap junction protein, gamma 1, 45kDa##AK128148|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##AK225335|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##AK293108|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##BC002360|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##AK302828|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##D21163|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##AK296367|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##AK297392|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2##AK316098|EFTUD2|9343|elongation factor Tu GTP binding domain containing 2	0.0	0.0	
chr19	47071839	47071938	reg1010158.p1	3.968	+	TSC_hg19_v1_chr19_-_46999149 AK124720 NM_020709	-72727	-	TSC_hg19_v1_chr19_-_46974789 BC032508 NM_001103149 NM_018215	-97083	-	AL834344 TSC_hg19_v1_chr19_-_46974751 AK290218 BC051688	-97166	-	TSC_hg19_v1_chr19_+_47104390 BC006182	32509	+	AK094504 NM_001205281	32568	-	TSC_hg19_v1_chr19_+_47104543 NM_005184	32632	+	AK124720|PNMAL2|57469|PNMA-like 2##NM_020709|PNMAL2|57469|PNMA-like 2##BC032508|PNMAL1|55228|PNMA-like 1##NM_001103149|PNMAL1|55228|PNMA-like 1##NM_018215|PNMAL1|55228|PNMA-like 1##AL834344|PNMAL1|55228|PNMA-like 1##AK290218|PNMAL1|55228|PNMA-like 1##BC051688|PNMAL1|55228|PNMA-like 1##BC006182|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)##AK094504|LOC100506012|100506012|serine/threonine-protein phosphatase 5-like##NM_001205281|LOC100506012|100506012|serine/threonine-protein phosphatase 5-like##NM_005184|CALM3|808|calmodulin 3 (phosphorylase kinase, delta)	0.999409	0.961452	CTCF.p2:-8:0.961	denovo_WM_7:54:0.848
chr3	35898561	35898657	reg1011401.p1	3.968	+	BC017805 NM_198399 BC066651 BC036548	-176150	+	AK055064 NM_001025068 NM_001025069 AK289868 AF112220 AK289649 AK294484	-177413	+	BC051828 NM_016300	-214761	+	TSC_hg19_v1_chr3_+_36421976 AK313493 BC020221 AK299160 AK302697 D86640 NM_003149 DQ892180 DQ895374 DQ895375 AB529185 AK310425	523443	+	NM_033403	882742	-	TSC_hg19_v1_chr3_-_36986546 NM_014831	1087961	-	BC017805|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_198399|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC066651|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC036548|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK055064|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025068|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_001025069|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289868|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AF112220|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK289649|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK294484|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##BC051828|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##NM_016300|ARPP21|10777|cAMP-regulated phosphoprotein, 21kDa##AK313493|STAC|6769|SH3 and cysteine rich domain##BC020221|STAC|6769|SH3 and cysteine rich domain##AK299160|STAC|6769|SH3 and cysteine rich domain##AK302697|STAC|6769|SH3 and cysteine rich domain##D86640|STAC|6769|SH3 and cysteine rich domain##NM_003149|STAC|6769|SH3 and cysteine rich domain##DQ892180|STAC|6769|SH3 and cysteine rich domain##DQ895374|STAC|6769|SH3 and cysteine rich domain##DQ895375|STAC|6769|SH3 and cysteine rich domain##AK310425|STAC|6769|SH3 and cysteine rich domain##NM_033403|DCLK3|85443|doublecortin-like kinase 3##NM_014831|TRANK1|9881|tetratricopeptide repeat and ankyrin repeat containing 1	0.0	0.0	
chr6	8435613	8435744	reg1018253.p1	3.968	+	AB011079 BT007306 CU675089 DQ893502 EU176776 TSC_hg19_v1_chr6_-_8102773 AF054186 BC005291 NM_001135650 NM_004280	-332888	-	TSC_hg19_v1_chr6_-_8064644 AK301142 AF426434 NM_001199322 NM_001199323 NM_201280	-371018	-	TSC_hg19_v1_chr6_-_8064623 BC052310 AK025442 BC032438 CR749569 BX647336 BC119645 BC119644	-371077	-	BC006973 TSC_hg19_v1_chr6_-_8435751 BX647208 AK309222 AK304250 BX648022 AK303940 AK313522 BX538271 BX641086 NM_001142540 NM_001142541 NM_015948	30	-	TSC_hg19_v1_chr6_+_8435870 BC040612	210	+	BC017754 NM_001032280 TSC_hg19_v1_chr6_-_10412623	1976938	-	AB011079|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BT007306|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##DQ893502|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##EU176776|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AF054186|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##BC005291|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_001135650|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##NM_004280|EEF1E1|9521|eukaryotic translation elongation factor 1 epsilon 1##AK301142|MUTED|63915|muted homolog (mouse)##AF426434|MUTED|63915|muted homolog (mouse)##NM_001199322|MUTED|63915|muted homolog (mouse)##NM_001199323|MUTED|63915|muted homolog (mouse)##NM_201280|MUTED|63915|muted homolog (mouse)##BC052310|MUTED-TXNDC5|100526836|MUTED-TXNDC5 readthrough (non-protein coding)##AK025442|MUTED|63915|muted homolog (mouse)##BC032438|MUTED|63915|muted homolog (mouse)##CR749569|MUTED|63915|muted homolog (mouse)##BX647336|MUTED|63915|muted homolog (mouse)##BC119645|MUTED|63915|muted homolog (mouse)##BC119644|MUTED|63915|muted homolog (mouse)##BC006973|SLC35B3|51000|solute carrier family 35, member B3##BX647208|SLC35B3|51000|solute carrier family 35, member B3##AK304250|SLC35B3|51000|solute carrier family 35, member B3##BX648022|SLC35B3|51000|solute carrier family 35, member B3##AK303940|SLC35B3|51000|solute carrier family 35, member B3##AK313522|SLC35B3|51000|solute carrier family 35, member B3##BX538271|SLC35B3|51000|solute carrier family 35, member B3##BX641086|SLC35B3|51000|solute carrier family 35, member B3##NM_001142540|SLC35B3|51000|solute carrier family 35, member B3##NM_001142541|SLC35B3|51000|solute carrier family 35, member B3##NM_015948|SLC35B3|51000|solute carrier family 35, member B3##BC040612|LOC100506207|100506207|uncharacterized LOC100506207##BC017754|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001032280|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)	0.0	0.0	
chrX	7983601	7983715	reg1012777.p1	3.968	+	AK304586 TSC_hg19_v1_chrX_-_7895766 NM_001142389 NM_001172672	-87887	-	AK289888 U03886 NM_004650 BC020746	-88208	-	AF167081 NM_013452	-173356	+	AF167079 NM_016378	155649	-	AF167078 AF167080 NM_001001888	449212	+	X60299 TSC_hg19_v1_chrX_-_8700155	716485	-	AK304586|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001142389|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001172672|PNPLA4|8228|patatin-like phospholipase domain containing 4##AK289888|PNPLA4|8228|patatin-like phospholipase domain containing 4##U03886|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_004650|PNPLA4|8228|patatin-like phospholipase domain containing 4##BC020746|PNPLA4|8228|patatin-like phospholipase domain containing 4##AF167081|VCX|26609|variable charge, X-linked##NM_013452|VCX|26609|variable charge, X-linked##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016378|VCX2|51480|variable charge, X-linked 2##AF167078|VCX3A|51481|variable charge, X-linked 3A##AF167080|VCX3B|425054|variable charge, X-linked 3B##NM_001001888|VCX3B|425054|variable charge, X-linked 3B##X60299|KAL1|3730|Kallmann syndrome 1 sequence	0.991336	0.0	denovo_WM_7:1:0.496	denovo_WM_7:2:0.496
chr10	71022113	71022258	reg1014169.p1	3.967	+	AK095086 NM_025130 BC110505 BC110504 TSC_hg19_v1_chr10_+_70980087 AK291024 BC069201	-42104	+	TSC_hg19_v1_chr10_+_70940005 BC036112 NM_003171 AK290416 AK299670 AF042169 CU690300 DQ891004 DQ894183	-82170	+	BX647725 TSC_hg19_v1_chr10_+_70883987 AK290536	-138185	+	NM_033497 NM_033498 NM_033500 U38226 U38227 U38228 AK128226	7572	+	NM_033496	53424	+	TSC_hg19_v1_chr10_+_71078602 AK292012 NM_000188 AK294428 AB209526 M75126	56414	+	AK095086|HKDC1|80201|hexokinase domain containing 1##NM_025130|HKDC1|80201|hexokinase domain containing 1##BC110505|HKDC1|80201|hexokinase domain containing 1##BC110504|HKDC1|80201|hexokinase domain containing 1##AK291024|HKDC1|80201|hexokinase domain containing 1##BC069201|HKDC1|80201|hexokinase domain containing 1##BC036112|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##NM_003171|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##AK290416|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##AK299670|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##AF042169|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##DQ891004|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##DQ894183|SUPV3L1|6832|suppressor of var1, 3-like 1 (S. cerevisiae)##BX647725|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##AK290536|VPS26A|9559|vacuolar protein sorting 26 homolog A (S. pombe)##NM_033497|HK1|3098|hexokinase 1##NM_033498|HK1|3098|hexokinase 1##NM_033500|HK1|3098|hexokinase 1##U38226|HK1|3098|hexokinase 1##U38227|HK1|3098|hexokinase 1##U38228|HK1|3098|hexokinase 1##AK128226|HK1|3098|hexokinase 1##NM_033496|HK1|3098|hexokinase 1##AK292012|HK1|3098|hexokinase 1##NM_000188|HK1|3098|hexokinase 1##AK294428|HK1|3098|hexokinase 1##AB209526|HK1|3098|hexokinase 1##M75126|HK1|3098|hexokinase 1	0.778742	0.0	denovo_WM_7:-11:0.692
chr1	185409376	185409537	reg1014935.p2	3.967	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-122986	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-123137	-	TSC_hg19_v1_chr1_+_185126418 AK291443	-283060	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	294120	+	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	855951	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	934801	-	NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##AK291443|SWT1|54823|SWT1 RNA endoribonuclease homolog (S. cerevisiae)##AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)	0.015445	0.0	
chr12	123851520	123851616	reg1011922.p1	3.967	+	AK122703 TSC_hg19_v1_chr12_-_123849766	-1803	-	BC030544 TSC_hg19_v1_chr12_-_123849386 AK001695 AK307488	-2175	-	AY364255 AB014772 BC129949 BC133704 NM_001167856 NM_018183	-16583	-	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	17087	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	17155	+	AY064546 TSC_hg19_v1_chr12_+_123873657	22061	+	AK122703|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC030544|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK001695|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK307488|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AY364255|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AB014772|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC129949|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##BC133704|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_001167856|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##NM_018183|SBNO1|55206|strawberry notch homolog 1 (Drosophila)##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8	0.991558	0.0	denovo_WM_7:20:0.879
chr12	56768792	56768940	reg1001874.p1	3.967	+	CU693184 L27050 AK314892 BC026257 NM_001638 CR936663	-12300	-	TSC_hg19_v1_chr12_-_56753946 AK316516 AK295052 AK295114 NM_005419 NM_198332	-14890	-	TSC_hg19_v1_chr12_-_56753912 AK308051	-14953	-	TSC_hg19_v1_chr12_-_56843191 BC031514 AF098162 AK296869 BC039842 NM_003920	74327	-	HQ258134 BC074913 BC117474 NM_012064	79550	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	93486	+	L27050|APOF|319|apolipoprotein F##AK314892|APOF|319|apolipoprotein F##BC026257|APOF|319|apolipoprotein F##NM_001638|APOF|319|apolipoprotein F##CR936663|APOF|319|apolipoprotein F##AK316516|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295052|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295114|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_005419|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_198332|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK308051|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##BC031514|TIMELESS|8914|timeless homolog (Drosophila)##AF098162|TIMELESS|8914|timeless homolog (Drosophila)##AK296869|TIMELESS|8914|timeless homolog (Drosophila)##BC039842|TIMELESS|8914|timeless homolog (Drosophila)##NM_003920|TIMELESS|8914|timeless homolog (Drosophila)##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4	0.987853	0.0	denovo_WM_7:-71:0.812
chr14	25423213	25423337	reg1014023.p1	3.967	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-319857	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-344414	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-377829	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	95963	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1643713	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3812953	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.0	0.0	
chr18	39606371	39606449	reg1014372.p2	3.967	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-71177	+	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	-71211	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2226142	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	1089159	-	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	1251019	-	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	2653704	+	BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK090603|LOC647946|647946|uncharacterized LOC647946##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1	0.981767	0.0	denovo_WM_7:21:0.982
chr19	18059624	18059766	reg1015257.p1	3.967	+	BC013949 NM_138442	-13791	+	TSC_hg19_v1_chr19_+_18043824 NM_001136203	-15871	+	BX648217 NM_000453 U66088 D87920	-76865	+	NM_002248 U69883	2415	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	52255	+	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	59323	+	BC013949|CCDC124|115098|coiled-coil domain containing 124##NM_138442|CCDC124|115098|coiled-coil domain containing 124##NM_001136203|CCDC124|115098|coiled-coil domain containing 124##BX648217|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##NM_000453|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##U66088|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##D87920|SLC5A5|6528|solute carrier family 5 (sodium iodide symporter), member 5##NM_002248|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##U69883|KCNN1|3780|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2	0.99518	0.0	denovo_WM_7:-11:0.759
chr2	74692814	74692898	reg1005860.p2	3.967	+	TSC_hg19_v1_chr2_-_74692541 AK313355 NM_001146158 NM_006302	-306	-	TSC_hg19_v1_chr2_-_74692510 X87237 BC002804 BC028337 AK307991	-344	-	BC117250 BC117252 BC143934 TSC_hg19_v1_chr2_-_74692487 AK292553 AK304655	-402	-	TSC_hg19_v1_chr2_-_74699815 BC012163 NM_053050	7003	-	HQ258495 TSC_hg19_v1_chr2_-_74710051 BC117269 BC143398 BC143399 AK075543	17204	-	TSC_hg19_v1_chr2_+_74710207 BC060805 NM_022492 BC045536 AK090520 AX746494 AK022850 AK225626 AK303105 AK303245 BC096709 BC098114 BC098365 BC099729 AK223355 AK301585 BC036017 BX648131 BC047084	17351	+	AK313355|MOGS|7841|mannosyl-oligosaccharide glucosidase##NM_001146158|MOGS|7841|mannosyl-oligosaccharide glucosidase##NM_006302|MOGS|7841|mannosyl-oligosaccharide glucosidase##X87237|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC002804|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC028337|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK307991|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117250|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC117252|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC143934|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK292553|MOGS|7841|mannosyl-oligosaccharide glucosidase##AK304655|MOGS|7841|mannosyl-oligosaccharide glucosidase##BC012163|MRPL53|116540|mitochondrial ribosomal protein L53##NM_053050|MRPL53|116540|mitochondrial ribosomal protein L53##HQ258495|CCDC142|84865|coiled-coil domain containing 142##BC117269|CCDC142|84865|coiled-coil domain containing 142##BC143398|CCDC142|84865|coiled-coil domain containing 142##BC143399|CCDC142|84865|coiled-coil domain containing 142##AK075543|CCDC142|84865|coiled-coil domain containing 142##BC060805|TTC31|64427|tetratricopeptide repeat domain 31##NM_022492|TTC31|64427|tetratricopeptide repeat domain 31##BC045536|TTC31|64427|tetratricopeptide repeat domain 31##AK090520|TTC31|64427|tetratricopeptide repeat domain 31##AK022850|TTC31|64427|tetratricopeptide repeat domain 31##AK225626|TTC31|64427|tetratricopeptide repeat domain 31##AK303105|TTC31|64427|tetratricopeptide repeat domain 31##AK303245|TTC31|64427|tetratricopeptide repeat domain 31##BC096709|TTC31|64427|tetratricopeptide repeat domain 31##BC098114|TTC31|64427|tetratricopeptide repeat domain 31##BC098365|TTC31|64427|tetratricopeptide repeat domain 31##BC099729|TTC31|64427|tetratricopeptide repeat domain 31##AK223355|TTC31|64427|tetratricopeptide repeat domain 31##AK301585|TTC31|64427|tetratricopeptide repeat domain 31##BC036017|TTC31|64427|tetratricopeptide repeat domain 31##BX648131|TTC31|64427|tetratricopeptide repeat domain 31##BC047084|TTC31|64427|tetratricopeptide repeat domain 31	0.998711	0.0	denovo_WM_7:-43:0.450	denovo_WM_7:-44:0.450
chr3	185800107	185800205	reg1012615.p1	3.967	+	TSC_hg19_v1_chr3_-_185655843 AK315632 NM_001243879 NM_004593	-144278	-	TSC_hg19_v1_chr3_-_185655809 AK098191	-144341	-	TSC_hg19_v1_chr3_-_185655803 BC000451 BC000160 U87836 AK308267	-144366	-	AK301878 TSC_hg19_v1_chr3_-_185826345 X76184	26190	-	TSC_hg19_v1_chr3_-_185826879 BC007333 NM_004454	26700	-	BC089411 AB209033 AK314192 D26135 TSC_hg19_v1_chr3_-_186080024 AK304440 NM_001080744 NM_001080745 NM_001346	279778	-	AK315632|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_001243879|TRA2B|6434|transformer 2 beta homolog (Drosophila)##NM_004593|TRA2B|6434|transformer 2 beta homolog (Drosophila)##AK098191|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC000451|TRA2B|6434|transformer 2 beta homolog (Drosophila)##BC000160|TRA2B|6434|transformer 2 beta homolog (Drosophila)##U87836|TRA2B|6434|transformer 2 beta homolog (Drosophila)##AK308267|TRA2B|6434|transformer 2 beta homolog (Drosophila)##AK301878|ETV5|2119|ets variant 5##X76184|ETV5|2119|ets variant 5##BC007333|ETV5|2119|ets variant 5##NM_004454|ETV5|2119|ets variant 5##BC089411|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AB209033|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK314192|DGKG|1608|diacylglycerol kinase, gamma 90kDa##D26135|DGKG|1608|diacylglycerol kinase, gamma 90kDa##AK304440|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080744|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001080745|DGKG|1608|diacylglycerol kinase, gamma 90kDa##NM_001346|DGKG|1608|diacylglycerol kinase, gamma 90kDa	0.998904	0.0	denovo_WM_7:69:0.310	denovo_WM_7:70:0.310	denovo_WM_7:71:0.310
chr7	20233261	20233380	reg1014219.p2	3.967	+	BX648384 NM_152774	-420917	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-484674	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-1048307	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	23660	-	AK295044 TSC_hg19_v1_chr7_+_20370337	137017	+	BC002630 NM_002214 M73780	137414	+	BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8	0.977278	0.0	denovo_WM_7:92:0.810
chr7	2966885	2967016	reg1017835.p2	3.967	+	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-83142	-	AK289723 AB075830 BC146753 NM_133463	-247792	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	-295247	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	116512	-	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	374049	+	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1754888	+	AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##NM_001037165|FOXK1|221937|forkhead box K1	0.999594	0.026374	denovo_WM_7:56:0.842
chr16	11079776	11079890	reg1013310.p1	3.966	+	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	-41390	+	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	-43598	-	BC071683 TSC_hg19_v1_chr16_-_11036171	-43667	-	AB000734 NM_003745 AK127621 TSC_hg19_v1_chr16_-_11350062	270217	-	X63758 BC096135 BC096136 BC096137 NM_005425	283305	-	NM_021247	287618	-	NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##BC071683|DEXI|28955|Dexi homolog (mouse)##AB000734|SOCS1|8651|suppressor of cytokine signaling 1##NM_003745|SOCS1|8651|suppressor of cytokine signaling 1##AK127621|SOCS1|8651|suppressor of cytokine signaling 1##X63758|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096135|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096136|TNP2|7142|transition protein 2 (during histone to protamine replacement)##BC096137|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_005425|TNP2|7142|transition protein 2 (during histone to protamine replacement)##NM_021247|PRM3|58531|protamine 3	1.991985	0.0	denovo_WM_7:44:0.248	denovo_WM_7:45:0.213	denovo_WM_7:64:0.214	denovo_WM_7:65:0.249
chr19	4457554	4457657	reg1000236.p1	3.966	+	AF272894 BC008288 NM_001171091	-2316	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	-54889	+	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	-57052	-	AF272893 NM_025241	184	-	TSC_hg19_v1_chr19_+_4472263 NM_001001520 NM_032631 AY358600 AF294267 BC000755 CU674386 DQ892175 DQ895370	14742	+	BC009449 TSC_hg19_v1_chr19_+_4488757	31121	+	AF272894|UBXN6|80700|UBX domain protein 6##BC008288|UBXN6|80700|UBX domain protein 6##NM_001171091|UBXN6|80700|UBX domain protein 6##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##AF272893|UBXN6|80700|UBX domain protein 6##NM_025241|UBXN6|80700|UBX domain protein 6##NM_001001520|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##NM_032631|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AY358600|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##AF294267|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC000755|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ892175|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##DQ895370|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2##BC009449|HDGFRP2|84717|hepatoma-derived growth factor-related protein 2	0.0	0.0	
chr2	46524585	46524714	reg1014679.p1	3.966	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	-58	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-645575	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-686242	-	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	326	+	NM_001145051	182054	+	BC034808 NM_080653	222446	-	NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2	0.969712	0.0	denovo_WM_7:58:0.748
chr2	8441808	8441900	reg1017588.p1	3.966	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-1384267	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-1423991	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-1435151	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	380349	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	535865	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	701967	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	0.999451	0.0	
chr5	142609812	142609975	reg1014606.p2	3.966	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-459585	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-459921	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-532322	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	172930	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	173213	-	BC015610 TSC_hg19_v1_chr5_-_142783214	173318	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.0	0.0	
chr6	133134344	133134524	reg1006202.p2	3.966	+	AK124442 BC069570 AK293853 TSC_hg19_v1_chr6_-_133119740 NM_052831 AK289918	-14733	-	AK292125 NM_078488 TSC_hg19_v1_chr6_-_133084603	-49839	-	BC064641 AB435062 AB435063 AB435064 AB435065 NM_001242350 HQ258282 HQ258449 AB026705 AJ132100 D89974 NM_004665 AK290908 AK298719 BC126145 BC126147 BC144064	-55433	-	TSC_hg19_v1_chr6_+_133135707 AK096147 NM_001016 D28378 X53505	1273	+	TSC_hg19_v1_chr6_+_133135710 AK311826 BC095424 BC017321 BC071930	1285	+	AK295798 NM_004100 NM_172103 NM_172105 TSC_hg19_v1_chr6_+_133562494	428057	+	AK124442|C6orf192|116843|chromosome 6 open reading frame 192##BC069570|C6orf192|116843|chromosome 6 open reading frame 192##AK293853|C6orf192|116843|chromosome 6 open reading frame 192##NM_052831|C6orf192|116843|chromosome 6 open reading frame 192##AK289918|C6orf192|116843|chromosome 6 open reading frame 192##AK292125|VNN2|8875|vanin 2##NM_078488|VNN2|8875|vanin 2##BC064641|VNN2|8875|vanin 2##AB435062|VNN2|8875|vanin 2##AB435063|VNN2|8875|vanin 2##AB435064|VNN2|8875|vanin 2##AB435065|VNN2|8875|vanin 2##NM_001242350|VNN2|8875|vanin 2##HQ258282|VNN2|8875|vanin 2##HQ258449|VNN2|8875|vanin 2##AB026705|VNN2|8875|vanin 2##AJ132100|VNN2|8875|vanin 2##D89974|VNN2|8875|vanin 2##NM_004665|VNN2|8875|vanin 2##AK290908|VNN2|8875|vanin 2##AK298719|VNN2|8875|vanin 2##BC126145|VNN2|8875|vanin 2##BC126147|VNN2|8875|vanin 2##BC144064|VNN2|8875|vanin 2##AK096147|SNORA33|594839|small nucleolar RNA, H/ACA box 33##NM_001016|RPS12|6206|ribosomal protein S12##D28378|RPS12|6206|ribosomal protein S12##X53505|RPS12|6206|ribosomal protein S12##AK311826|RPS12|6206|ribosomal protein S12##BC095424|RPS12|6206|ribosomal protein S12##BC017321|RPS12|6206|ribosomal protein S12##BC071930|RPS12|6206|ribosomal protein S12##AK295798|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_004100|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_172103|EYA4|2070|eyes absent homolog 4 (Drosophila)##NM_172105|EYA4|2070|eyes absent homolog 4 (Drosophila)	0.245051	0.0	
chr6	20428283	20428443	reg1010861.p1	3.966	+	CR749285 NM_001243076	-24330	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-26260	+	BC045695 AK304748 BC150650 BC150652 TSC_hg19_v1_chr6_-_20212683 AK131269 NM_001080480 AK296857	-215691	-	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	106360	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	1166009	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	1238296	+	CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##BC045695|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK304748|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150650|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##BC150652|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK131269|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##NM_001080480|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK296857|MBOAT1|154141|membrane bound O-acyltransferase domain containing 1##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340	0.993525	0.0	denovo_WM_7:94:0.763
chr9	37565711	37565785	reg1006360.p1	3.966	+	TSC_hg19_v1_chr9_+_37485944 BC014331 AK023452 AK302345 AK303167 NM_022490 AK301347 AK024032 AK225050 BC017766 BC001337 CR457313 AK091294 AX746899	-79718	+	TSC_hg19_v1_chr9_-_37465448 AK292404	-100307	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	-100353	-	AF174598 AF176705 NM_012166 TSC_hg19_v1_chr9_-_37576280	10517	-	CR627326 AB435233 TSC_hg19_v1_chr9_-_37592574 BC034247	26771	-	TSC_hg19_v1_chr9_-_37592575 BC029423 NM_001001790 NM_001134484 NM_001134485	26857	-	BC014331|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK023452|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK302345|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK303167|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##NM_022490|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK301347|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK024032|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK225050|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC017766|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##BC001337|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##CR457313|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK091294|POLR1E|64425|polymerase (RNA) I polypeptide E, 53kDa##AK292404|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5##AF174598|FBXO10|26267|F-box protein 10##AF176705|FBXO10|26267|F-box protein 10##NM_012166|FBXO10|26267|F-box protein 10##AB435233|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC034247|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##BC029423|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001001790|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001134484|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)##NM_001134485|TOMM5|401505|translocase of outer mitochondrial membrane 5 homolog (yeast)	0.0	0.0	
chr13	50040527	50040653	reg1015106.p1	3.965	+	BC047434 NM_001160308 AK307593	-14860	+	TSC_hg19_v1_chr13_+_50018555 AK308354	-22007	+	TSC_hg19_v1_chr13_+_50018457 NM_031915 AK308220 AF334407	-22120	+	AK293242 NM_001040443	29182	+	AB011031 TSC_hg19_v1_chr13_+_50070102 AK026228 AK300410 BC017212 AB527905 DQ891958 DQ895148	29526	+	NM_001040444 AK225986	29939	+	BC047434|SETDB2|83852|SET domain, bifurcated 2##NM_001160308|SETDB2|83852|SET domain, bifurcated 2##AK307593|SETDB2|83852|SET domain, bifurcated 2##AK308354|SETDB2|83852|SET domain, bifurcated 2##NM_031915|SETDB2|83852|SET domain, bifurcated 2##AK308220|SETDB2|83852|SET domain, bifurcated 2##AF334407|SETDB2|83852|SET domain, bifurcated 2##AK293242|PHF11|51131|PHD finger protein 11##NM_001040443|PHF11|51131|PHD finger protein 11##AB011031|PHF11|51131|PHD finger protein 11##AK026228|PHF11|51131|PHD finger protein 11##AK300410|PHF11|51131|PHD finger protein 11##BC017212|PHF11|51131|PHD finger protein 11##DQ891958|PHF11|51131|PHD finger protein 11##DQ895148|PHF11|51131|PHD finger protein 11##NM_001040444|PHF11|51131|PHD finger protein 11##AK225986|PHF11|51131|PHD finger protein 11	0.999654	0.0	denovo_WM_7:-6:0.457	denovo_WM_7:-7:0.457
chr16	59117446	59117521	reg1016398.p1	3.965	+	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-349286	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-398827	-	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	-453738	-	AK124734 NM_001796	2953255	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	6038419	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	6038485	-	DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	1.964204	0.0	denovo_WM_7:-21:0.470	denovo_WM_7:-22:0.527	denovo_WM_7:92:0.274	denovo_WM_7:93:0.693
chr16	69479022	69479103	reg1016288.p1	3.965	+	BC004373 AK291576 TSC_hg19_v1_chr16_+_69458565	-20498	+	TSC_hg19_v1_chr16_+_69458522 AB009282 NM_030579 BX647922 BC014431	-20546	+	TSC_hg19_v1_chr16_-_69419884 AF002999 BC024890 NM_005652	-59202	-	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	120806	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	120854	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	121119	+	BC004373|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AK291576|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AB009282|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##NM_030579|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BX647922|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##BC014431|CYB5B|80777|cytochrome b5 type B (outer mitochondrial membrane)##AF002999|TERF2|7014|telomeric repeat binding factor 2##BC024890|TERF2|7014|telomeric repeat binding factor 2##NM_005652|TERF2|7014|telomeric repeat binding factor 2##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive	0.0	0.0	
chr17	8883311	8883441	reg1006089.p1	3.965	+	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	-14395	-	AY725853 AF128881 NM_014308	-67560	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	-112392	-	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	41591	+	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	595755	-	TSC_hg19_v1_chr17_-_9479156 BC009713 AF062077 AF115323 NM_004853	595830	-	AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8##BC009713|STX8|9482|syntaxin 8##AF062077|STX8|9482|syntaxin 8##AF115323|STX8|9482|syntaxin 8##NM_004853|STX8|9482|syntaxin 8	0.993521	0.0	denovo_WM_7:58:0.210	denovo_WM_7:64:0.493
chr21	43264027	43264187	reg1015184.p1	3.965	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-76840	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-76885	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-384024	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	35391	-	BC062323 AL833323 NM_199050	82682	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	109976	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	1.228841	0.0	denovo_WM_7:-39:0.258
chr22	33639753	33639871	reg1018809.p1	3.965	+	AB209684 TSC_hg19_v1_chr22_-_33454341 NM_001135774	-185457	-	CU013189 CU013477 HQ258468 AB463296 BC075065 BC075066 BC117460 BC143874 AF046873 CR456589 NM_003490 NM_133633	-237086	-	BC014277 TSC_hg19_v1_chr22_+_33197759	-442060	+	AJ007583 AB011181 NM_004737 NM_133642	676558	-	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	1822337	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	2013664	+	AB209684|SYN3|8224|synapsin III##NM_001135774|SYN3|8224|synapsin III##CU013189|SYN3|8224|synapsin III##CU013477|SYN3|8224|synapsin III##HQ258468|SYN3|8224|synapsin III##BC075065|SYN3|8224|synapsin III##BC075066|SYN3|8224|synapsin III##BC117460|SYN3|8224|synapsin III##BC143874|SYN3|8224|synapsin III##AF046873|SYN3|8224|synapsin III##CR456589|SYN3|8224|synapsin III##NM_003490|SYN3|8224|synapsin III##NM_133633|SYN3|8224|synapsin III##BC014277|TIMP3|7078|TIMP metallopeptidase inhibitor 3##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4	0.0	0.0	
chr4	115522937	115523064	reg1014226.p1	3.965	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-3417	+	AK307532 TSC_hg19_v1_chr4_-_114900840 AY358647 NM_024590	-622161	-	TSC_hg19_v1_chr4_-_114682923 NM_001221 NM_172114 NM_172115 NM_172127 NM_172128 NM_172129	-840030	-	NM_003360 U30930	20522	+	BC113075 BC012326 AK289670 AB036429 NM_022569	511981	-	AK074617 BC030831 NM_152402	2483733	-	AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK307532|ARSJ|79642|arylsulfatase family, member J##AY358647|ARSJ|79642|arylsulfatase family, member J##NM_024590|ARSJ|79642|arylsulfatase family, member J##NM_001221|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172114|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172115|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172127|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172128|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_172129|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1	1.034744	0.0	denovo_WM_7:-6:0.607
chr6	56407200	56407357	reg1011736.p1	3.965	+	AF330693 TSC_hg19_v1_chr6_-_56258945	-148354	-	TSC_hg19_v1_chr6_-_56112350 BC045597 AF414088 AL136624 AK313398 NM_030820	-294917	-	TSC_hg19_v1_chr6_-_56112233 BC126108 BC143862 BC143863 BC143864 BC143865 AK126586	-295042	-	BC038763 TSC_hg19_v1_chr6_-_56407722	430	-	AF400226 AF400227 M69225 BC065536 L11690 NM_001723 NM_015548	100361	-	TSC_hg19_v1_chr6_-_56708446 U31850	301194	-	AF330693|COL21A1|81578|collagen, type XXI, alpha 1##BC045597|COL21A1|81578|collagen, type XXI, alpha 1##AF414088|COL21A1|81578|collagen, type XXI, alpha 1##AL136624|COL21A1|81578|collagen, type XXI, alpha 1##AK313398|COL21A1|81578|collagen, type XXI, alpha 1##NM_030820|COL21A1|81578|collagen, type XXI, alpha 1##BC126108|COL21A1|81578|collagen, type XXI, alpha 1##BC143862|COL21A1|81578|collagen, type XXI, alpha 1##BC143863|COL21A1|81578|collagen, type XXI, alpha 1##BC143864|COL21A1|81578|collagen, type XXI, alpha 1##BC143865|COL21A1|81578|collagen, type XXI, alpha 1##AK126586|COL21A1|81578|collagen, type XXI, alpha 1##AF400226|DST|667|dystonin##AF400227|DST|667|dystonin##M69225|DST|667|dystonin##BC065536|DST|667|dystonin##L11690|DST|667|dystonin##NM_001723|DST|667|dystonin##NM_015548|DST|667|dystonin##U31850|DST|667|dystonin	1.405721	0.0	denovo_WM_7:-29:0.216	denovo_WM_7:-44:0.223
chr8	38242647	38242756	reg1010192.p1	3.965	+	TSC_hg19_v1_chr8_-_38239790 AF332468 AF332469 NM_017778 NM_023034 BC000030	-2905	-	AK022560 TSC_hg19_v1_chr8_-_38239782 AJ295990 AJ295991 AJ295992 BC062631 BC012059 AF255649 BC007787	-3075	-	TSC_hg19_v1_chr8_-_38239339 BC101717 BC113469 BC143510 BC115006 BC115007	-3348	-	NM_001199659 NM_144652 TSC_hg19_v1_chr8_+_38244011 AK289944 AK058138 AK302317 BC069830 AL832241 AY173945 AK302474	1309	+	BC024250 NM_001199660	1946	+	AK291754 AK309947 AK292470 NM_001174065 NM_001174066 NM_001174067	82600	-	AF332468|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF332469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_017778|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_023034|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC000030|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AK022560|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295990|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295991|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AJ295992|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC062631|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC012059|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##AF255649|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC007787|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC101717|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC113469|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC143510|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115006|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##BC115007|WHSC1L1|54904|Wolf-Hirschhorn syndrome candidate 1-like 1##NM_001199659|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##NM_144652|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK289944|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK058138|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK302317|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##BC069830|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AL832241|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AY173945|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK302474|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##BC024250|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##NM_001199660|LETM2|137994|leucine zipper-EF-hand containing transmembrane protein 2##AK291754|FGFR1|2260|fibroblast growth factor receptor 1##AK309947|FGFR1|2260|fibroblast growth factor receptor 1##AK292470|FGFR1|2260|fibroblast growth factor receptor 1##NM_001174065|FGFR1|2260|fibroblast growth factor receptor 1##NM_001174066|FGFR1|2260|fibroblast growth factor receptor 1##NM_001174067|FGFR1|2260|fibroblast growth factor receptor 1	0.0	0.048329	
chr1	150132591	150132657	reg1004234.p1	3.964	+	TSC_hg19_v1_chr1_+_150122415 AB464030 AK222921 CU679641 DQ893381 DQ896780 AF073836	-10186	+	TSC_hg19_v1_chr1_+_150122268 AF217956 AF168676 BC010149	-10320	+	TSC_hg19_v1_chr1_+_150122120 AK302255 AF192912 AF291105 NM_016274	-10492	+	AK095228 NM_001136479	74401	-	AB528764 AM393076 AL833660 TSC_hg19_v1_chr1_-_150208332 AK303333 BC003380 AL832664 AK303392 AK223469	75643	-	AY057381 TSC_hg19_v1_chr1_-_150208461 AK092672 AX747663	75827	-	AK222921|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ893381|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##DQ896780|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF073836|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF217956|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF168676|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##BC010149|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK302255|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF192912|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AF291105|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##NM_016274|PLEKHO1|51177|pleckstrin homology domain containing, family O member 1##AK095228|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##NM_001136479|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AM393076|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL833660|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303333|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##BC003380|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AL832664|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK303392|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK223469|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AY057381|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E##AK092672|ANP32E|81611|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.99503	0.0	
chr1	173376608	173376740	reg1007951.p1	3.964	+	CR542033 D90224 X79929 NM_003326	-200282	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	-202021	-	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	-356618	-	TSC_hg19_v1_chr1_-_173446300 AK127238	69634	-	TSC_hg19_v1_chr1_+_173446473 AK300680	69799	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	69853	+	CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##AK300680|PRDX6|9588|peroxiredoxin 6##BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6	0.999643	0.0	
chr1	182585142	182585250	reg1010639.p1	3.964	+	AF493937 BT006638 CU675307 AB528682 U94829 U70426 BC006243 TSC_hg19_v1_chr1_-_182573525 AK301261 AK311880 NM_002928	-11726	-	CU675308 TSC_hg19_v1_chr1_+_182569465	-15750	+	AK315231 BC090934 TSC_hg19_v1_chr1_-_182558392 CR627369 NM_021133	-26813	-	BC069677 BC069718 BC103865 BC103866 BC103867 AF297015 NM_001102450 NM_033345	56845	-	NM_001200050 NM_001200051 NM_001200052 NM_001200056 NM_030769 BC042003	173388	+	BC034966 AK313225 BC058003 TSC_hg19_v1_chr1_+_182758907 AK297017 AK301068 AY336748	173695	+	AF493937|RGS16|6004|regulator of G-protein signaling 16##BT006638|RGS16|6004|regulator of G-protein signaling 16##U94829|RGS16|6004|regulator of G-protein signaling 16##U70426|RGS16|6004|regulator of G-protein signaling 16##BC006243|RGS16|6004|regulator of G-protein signaling 16##AK301261|RGS16|6004|regulator of G-protein signaling 16##AK311880|RGS16|6004|regulator of G-protein signaling 16##NM_002928|RGS16|6004|regulator of G-protein signaling 16##AK315231|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC090934|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##CR627369|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##NM_021133|RNASEL|6041|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)##BC069677|RGS8|85397|regulator of G-protein signaling 8##BC069718|RGS8|85397|regulator of G-protein signaling 8##BC103865|RGS8|85397|regulator of G-protein signaling 8##BC103866|RGS8|85397|regulator of G-protein signaling 8##BC103867|RGS8|85397|regulator of G-protein signaling 8##AF297015|RGS8|85397|regulator of G-protein signaling 8##NM_001102450|RGS8|85397|regulator of G-protein signaling 8##NM_033345|RGS8|85397|regulator of G-protein signaling 8##NM_001200050|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200051|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200052|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_001200056|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##NM_030769|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC042003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC034966|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK313225|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC058003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK297017|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK301068|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AY336748|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)	0.0	0.0	
chr1	236323968	236324148	reg1005758.p1	3.964	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-18182	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-95318	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-95560	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	121130	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	121258	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	233625	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.0	0.0	
chr2	162246454	162246581	reg1006020.p2	3.964	+	TSC_hg19_v1_chr2_+_162164996 U86782	-81494	+	NM_005805 TSC_hg19_v1_chr2_+_162164936 BC066336	-81655	+	TSC_hg19_v1_chr2_+_162016938 AK313096 NM_001199135 BC067779	-229568	+	NM_006593 BC104844 BC113418 TSC_hg19_v1_chr2_+_162272726	26164	+	TSC_hg19_v1_chr2_+_162272830 AK297438 AK312567 AK226050 BC029289	26304	+	TSC_hg19_v1_chr2_+_162272908 U49250 AB529217 HQ258587	26389	+	U86782|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##NM_005805|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##BC066336|PSMD14|10213|proteasome (prosome, macropain) 26S subunit, non-ATPase, 14##AK313096|TANK|10010|TRAF family member-associated NFKB activator##NM_001199135|TANK|10010|TRAF family member-associated NFKB activator##BC067779|TANK|10010|TRAF family member-associated NFKB activator##NM_006593|TBR1|10716|T-box, brain, 1##BC104844|TBR1|10716|T-box, brain, 1##BC113418|TBR1|10716|T-box, brain, 1##AK297438|TBR1|10716|T-box, brain, 1##AK312567|TBR1|10716|T-box, brain, 1##AK226050|TBR1|10716|T-box, brain, 1##BC029289|TBR1|10716|T-box, brain, 1##U49250|TBR1|10716|T-box, brain, 1##HQ258587|TBR1|10716|T-box, brain, 1	0.808904	0.0	
chr22	22121594	22121692	reg1011061.p2	3.964	+	BC034486 BC074501 TSC_hg19_v1_chr22_-_22090057 BC048303 NM_013313 AB098734 AB098735	-31595	-	NM_014337 NM_148175 NM_148176 TSC_hg19_v1_chr22_+_22020298 AF320072 AK289545 BC000022 U37219 AK127259 BC028385 AK299206 CR456548 DQ891659 DQ894846 AB463162 CU013148 CU013436 CU673996 CU688484	-101314	+	TSC_hg19_v1_chr22_+_21996619 CR456570 AF277316 AB528230 BC139837 CU013169 CU013457	-125004	+	TSC_hg19_v1_chr22_-_22221936 DQ399292 AB384931 EU176323 EU831429 EU831522 AK307615 Z11694 AK090869 BC099905	100186	-	AK295188 TSC_hg19_v1_chr22_-_22221938	100294	-	TSC_hg19_v1_chr22_-_22221955 BC017832 NM_002745 NM_138957	100327	-	BC034486|YPEL1|29799|yippee-like 1 (Drosophila)##BC074501|YPEL1|29799|yippee-like 1 (Drosophila)##BC048303|YPEL1|29799|yippee-like 1 (Drosophila)##NM_013313|YPEL1|29799|yippee-like 1 (Drosophila)##AB098734|YPEL1|29799|yippee-like 1 (Drosophila)##AB098735|YPEL1|29799|yippee-like 1 (Drosophila)##NM_014337|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148175|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148176|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AF320072|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK289545|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC000022|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##U37219|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK127259|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC028385|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK299206|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456548|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ891659|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ894846|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013148|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013436|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456570|SDF2L1|23753|stromal cell-derived factor 2-like 1##AF277316|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC139837|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013169|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013457|SDF2L1|23753|stromal cell-derived factor 2-like 1##DQ399292|MAPK1|5594|mitogen-activated protein kinase 1##EU176323|MAPK1|5594|mitogen-activated protein kinase 1##EU831429|MAPK1|5594|mitogen-activated protein kinase 1##EU831522|MAPK1|5594|mitogen-activated protein kinase 1##AK307615|MAPK1|5594|mitogen-activated protein kinase 1##Z11694|MAPK1|5594|mitogen-activated protein kinase 1##AK090869|MAPK1|5594|mitogen-activated protein kinase 1##BC099905|MAPK1|5594|mitogen-activated protein kinase 1##AK295188|MAPK1|5594|mitogen-activated protein kinase 1##BC017832|MAPK1|5594|mitogen-activated protein kinase 1##NM_002745|MAPK1|5594|mitogen-activated protein kinase 1##NM_138957|MAPK1|5594|mitogen-activated protein kinase 1	0.0	0.0	
chr4	40310110	40310249	reg1011657.p2	3.964	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-111538	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-251647	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-330586	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	27266	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	206405	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	207779	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	0.996359	0.0	denovo_WM_7:-101:0.902
chr6	155094892	155095062	reg1005242.p1	3.964	+	TSC_hg19_v1_chr6_+_155054812 AB029039	-40152	+	AK295651 AK303001 AK307815 TSC_hg19_v1_chr6_+_155054549 BC032728	-40423	+	BC070071 NM_014892 TSC_hg19_v1_chr6_+_155054540 AK302969	-40452	+	NM_012454	316445	+	NM_001010927 AK299723 BC066979 AF120324 BC022469	443151	+	BC020838 NM_001001346	490169	+	AB029039|SCAF8|22828|SR-related CTD-associated factor 8##AK295651|SCAF8|22828|SR-related CTD-associated factor 8##AK303001|SCAF8|22828|SR-related CTD-associated factor 8##AK307815|SCAF8|22828|SR-related CTD-associated factor 8##BC032728|SCAF8|22828|SR-related CTD-associated factor 8##BC070071|SCAF8|22828|SR-related CTD-associated factor 8##NM_014892|SCAF8|22828|SR-related CTD-associated factor 8##AK302969|SCAF8|22828|SR-related CTD-associated factor 8##NM_012454|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##NM_001010927|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AK299723|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC066979|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##AF120324|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC022469|TIAM2|26230|T-cell lymphoma invasion and metastasis 2##BC020838|CLDN20|49861|claudin 20##NM_001001346|CLDN20|49861|claudin 20	0.0	0.0	
chr7	1223300	1223425	reg1012171.p2	3.964	+	TSC_hg19_v1_chr7_+_1200097 AK090593	-23249	+	TSC_hg19_v1_chr7_-_1199853 NM_182491	-23523	-	AK290170 TSC_hg19_v1_chr7_-_1199815	-23548	-	TSC_hg19_v1_chr7_+_1272552 NM_001080461	49240	+	CU691530 EU832111 EU832205 AK074068 BC037988 TSC_hg19_v1_chr7_-_1499102	275671	-	TSC_hg19_v1_chr7_-_1499107 AK027124 NM_182924	275745	-	NM_182491|ZFAND2A|90637|zinc finger, AN1-type domain 2A##AK290170|ZFAND2A|90637|zinc finger, AN1-type domain 2A##NM_001080461|UNCX|340260|UNC homeobox##EU832111|MICALL2|79778|MICAL-like 2##EU832205|MICALL2|79778|MICAL-like 2##AK074068|MICALL2|79778|MICAL-like 2##BC037988|MICALL2|79778|MICAL-like 2##AK027124|MICALL2|79778|MICAL-like 2##NM_182924|MICALL2|79778|MICAL-like 2	0.613941	0.907136	CTCF.p2:-72:0.907
chr8	54674110	54674223	reg1015658.p1	3.964	+	BC099912 AK310407 AY168006 NM_000912 AY466378	-509954	-	BC069117 BC107101 NM_005285	-821699	+	AB059622 TSC_hg19_v1_chr8_-_53626996 NM_001083617 NM_014781	-1047153	-	AK098305 NM_213620 BC014862 AF125105 TSC_hg19_v1_chr8_-_54755806 BC007421 BC007454 BC025275 AF112204 AF132945 AK308204	81513	-	AK022345 TSC_hg19_v1_chr8_-_54755834	81661	-	AF113222 TSC_hg19_v1_chr8_-_54755840 NM_015941 NM_213619 AK303229	81686	-	BC099912|OPRK1|4986|opioid receptor, kappa 1##AK310407|OPRK1|4986|opioid receptor, kappa 1##AY168006|OPRK1|4986|opioid receptor, kappa 1##NM_000912|OPRK1|4986|opioid receptor, kappa 1##AY466378|OPRK1|4986|opioid receptor, kappa 1##BC069117|NPBWR1|2831|neuropeptides B/W receptor 1##BC107101|NPBWR1|2831|neuropeptides B/W receptor 1##NM_005285|NPBWR1|2831|neuropeptides B/W receptor 1##AB059622|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_001083617|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_014781|RB1CC1|9821|RB1-inducible coiled-coil 1##AK098305|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213620|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC014862|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF125105|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007421|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007454|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC025275|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF112204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF132945|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK308204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK022345|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF113222|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_015941|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213619|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK303229|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	0.0	0.0	
chr8	67297840	67297934	reg1006663.p2	3.964	+	BC002599 BC011031 AK075431 NM_000756	-207120	-	AK091310 AX746908 AJ243488 AJ243489 AJ277493 AJ431704 NM_033058 NM_184085 NM_184086 NM_184087 TSC_hg19_v1_chr8_+_67039363 AJ291712 BC007750 AK091728 AX747148 CU675793 BT007212	-258547	+	NM_033105 BC016742 AF368276 AL133660	-364068	+	TSC_hg19_v1_chr8_+_67341260 D25218 NM_015169 BC013043 AK024716 BC001811 DQ892772 EU176745	43419	+	NM_144650 AY033237 AK056992 AK300881 BC047492 BC064634 AK293530 AK300243 AK294114 BC110290	46845	+	NM_152765	107603	+	BC002599|CRH|1392|corticotropin releasing hormone##BC011031|CRH|1392|corticotropin releasing hormone##AK075431|CRH|1392|corticotropin releasing hormone##NM_000756|CRH|1392|corticotropin releasing hormone##AK091310|TRIM55|84675|tripartite motif containing 55##AJ243488|TRIM55|84675|tripartite motif containing 55##AJ243489|TRIM55|84675|tripartite motif containing 55##AJ277493|TRIM55|84675|tripartite motif containing 55##AJ431704|TRIM55|84675|tripartite motif containing 55##NM_033058|TRIM55|84675|tripartite motif containing 55##NM_184085|TRIM55|84675|tripartite motif containing 55##NM_184086|TRIM55|84675|tripartite motif containing 55##NM_184087|TRIM55|84675|tripartite motif containing 55##AJ291712|TRIM55|84675|tripartite motif containing 55##BC007750|TRIM55|84675|tripartite motif containing 55##AK091728|TRIM55|84675|tripartite motif containing 55##BT007212|TRIM55|84675|tripartite motif containing 55##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##D25218|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_015169|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC013043|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##AK024716|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##BC001811|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##DQ892772|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##EU176745|RRS1|23212|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)##NM_144650|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AY033237|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK056992|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300881|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC047492|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC064634|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK293530|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK300243|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##AK294114|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##BC110290|ADHFE1|137872|alcohol dehydrogenase, iron containing, 1##NM_152765|C8orf46|254778|chromosome 8 open reading frame 46	0.999409	0.0	
chr9	79005567	79005672	reg1012302.p1	3.964	+	TSC_hg19_v1_chr9_+_78505588 NM_001190482 NM_006200 AK056202 AK225773 AK310862 AX805774 BC012064	-499984	+	TSC_hg19_v1_chr9_+_77703429 AK291511 AK222596 U63717 BC007459 AB528711 CU675669	-1302109	+	TSC_hg19_v1_chr9_+_77703406 NM_012383	-1302219	+	BC015473 TSC_hg19_v1_chr9_-_79009434 BC007069 AK002011 AK307079 AK315734 NM_018339	3772	-	AY196293 NM_001097634	50962	+	NM_001097633 NM_001490 TSC_hg19_v1_chr9_+_79074142 AY196294 AY196295 AL832647	68497	+	NM_001190482|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##NM_006200|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK056202|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK225773|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK310862|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##BC012064|PCSK5|5125|proprotein convertase subtilisin/kexin type 5##AK291511|OSTF1|26578|osteoclast stimulating factor 1##AK222596|OSTF1|26578|osteoclast stimulating factor 1##U63717|OSTF1|26578|osteoclast stimulating factor 1##BC007459|OSTF1|26578|osteoclast stimulating factor 1##NM_012383|OSTF1|26578|osteoclast stimulating factor 1##BC007069|RFK|55312|riboflavin kinase##AK002011|RFK|55312|riboflavin kinase##AK307079|RFK|55312|riboflavin kinase##AK315734|RFK|55312|riboflavin kinase##NM_018339|RFK|55312|riboflavin kinase##AY196293|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097634|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001097633|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##NM_001490|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196294|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AY196295|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2##AL832647|GCNT1|2650|glucosaminyl (N-acetyl) transferase 1, core 2	1.006846	0.0	denovo_WM_7:14:0.474	denovo_WM_7:15:0.474
chr1	164629834	164630000	reg1016731.p2	3.963	+	AK291415 M86546 TSC_hg19_v1_chr1_+_164528957 AK299673 BC101578 BC143435 BC143451 AB384885 BT006705	-100931	+	TSC_hg19_v1_chr1_+_164528595 NM_001204961 NM_001204963 NM_002585	-101326	+	NM_031423 NM_145697 TSC_hg19_v1_chr1_+_163291746 AK093348 AX748068 AF326731 BC008489 AB050577	-1338141	+	TSC_hg19_v1_chr1_+_164818083 AK022520	188206	+	AK122800 NM_001174069	695558	-	AK127724 NM_177398	696034	-	AK291415|PBX1|5087|pre-B-cell leukemia homeobox 1##M86546|PBX1|5087|pre-B-cell leukemia homeobox 1##AK299673|PBX1|5087|pre-B-cell leukemia homeobox 1##BC101578|PBX1|5087|pre-B-cell leukemia homeobox 1##BC143435|PBX1|5087|pre-B-cell leukemia homeobox 1##BC143451|PBX1|5087|pre-B-cell leukemia homeobox 1##BT006705|PBX1|5087|pre-B-cell leukemia homeobox 1##NM_001204961|PBX1|5087|pre-B-cell leukemia homeobox 1##NM_001204963|PBX1|5087|pre-B-cell leukemia homeobox 1##NM_002585|PBX1|5087|pre-B-cell leukemia homeobox 1##NM_031423|NUF2|83540|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_145697|NUF2|83540|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK093348|NUF2|83540|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AF326731|NUF2|83540|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC008489|NUF2|83540|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AB050577|NUF2|83540|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK022520|PBX1|5087|pre-B-cell leukemia homeobox 1##AK122800|LMX1A|4009|LIM homeobox transcription factor 1, alpha##NM_001174069|LMX1A|4009|LIM homeobox transcription factor 1, alpha##AK127724|LMX1A|4009|LIM homeobox transcription factor 1, alpha##NM_177398|LMX1A|4009|LIM homeobox transcription factor 1, alpha	0.0	0.0	
chr12	27425843	27426009	reg1017163.p1	3.963	+	TSC_hg19_v1_chr12_+_27397225 AK304755	-28701	+	TSC_hg19_v1_chr12_+_27397187 AK291055	-28739	+	NM_015000 BC028603 TSC_hg19_v1_chr12_+_27397168	-28802	+	TSC_hg19_v1_chr12_+_27485806 AF256215 NM_001248002 NM_001248003 NM_001248004 NM_001248005 NM_020183 AK296706 AF246960 AF246961 AF246962 AF246963 BC125062 BC125061	59953	+	BC043511 TSC_hg19_v1_chr12_-_27599649	173678	-	NM_001145010	193816	+	AK304755|STK38L|23012|serine/threonine kinase 38 like##AK291055|STK38L|23012|serine/threonine kinase 38 like##NM_015000|STK38L|23012|serine/threonine kinase 38 like##BC028603|STK38L|23012|serine/threonine kinase 38 like##AF256215|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248002|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248003|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248004|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001248005|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_020183|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AK296706|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246960|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246961|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246962|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##AF246963|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125062|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC125061|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##BC043511|ARNTL2|56938|aryl hydrocarbon receptor nuclear translocator-like 2##NM_001145010|C12orf70|341346|chromosome 12 open reading frame 70	0.998317	0.0	denovo_WM_7:64:0.724
chr14	74326514	74326620	reg1010907.p2	3.963	+	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	-7978	+	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	-72648	-	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-99602	-	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	26751	+	BC050683 AK298520 TSC_hg19_v1_chr14_+_74353561 AK315206 AK223261 AK293350 AK298307 AK303834 AK304609 AK310031 AK301382 AK309957 BC000330 BC004357 U90919	26979	+	AK296040 NM_182480 BX248000	90068	+	NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410##BC050683|ZNF410|57862|zinc finger protein 410##AK298520|ZNF410|57862|zinc finger protein 410##AK315206|ZNF410|57862|zinc finger protein 410##AK223261|ZNF410|57862|zinc finger protein 410##AK293350|ZNF410|57862|zinc finger protein 410##AK298307|ZNF410|57862|zinc finger protein 410##AK303834|ZNF410|57862|zinc finger protein 410##AK304609|ZNF410|57862|zinc finger protein 410##AK310031|ZNF410|57862|zinc finger protein 410##AK301382|ZNF410|57862|zinc finger protein 410##AK309957|ZNF410|57862|zinc finger protein 410##BC000330|ZNF410|57862|zinc finger protein 410##BC004357|ZNF410|57862|zinc finger protein 410##U90919|ZNF410|57862|zinc finger protein 410##AK296040|COQ6|51004|coenzyme Q6 homolog, monooxygenase (S. cerevisiae)##NM_182480|COQ6|51004|coenzyme Q6 homolog, monooxygenase (S. cerevisiae)##BX248000|COQ6|51004|coenzyme Q6 homolog, monooxygenase (S. cerevisiae)	1.995013	0.0	denovo_WM_7:6:0.219	denovo_WM_7:7:0.760	denovo_WM_7:-72:0.526
chr18	50042031	50042097	reg1016193.p1	3.963	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	-174951	+	NM_005215 TSC_hg19_v1_chr18_+_49866541	-175523	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-1318024	-	TSC_hg19_v1_chr18_-_51690988 AL110266	1648928	-	AF072246 TSC_hg19_v1_chr18_-_51750614	1708473	-	TSC_hg19_v1_chr18_-_51750997 BC032638	1708901	-	M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##NM_005215|DCC|1630|deleted in colorectal carcinoma##NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AL110266|MBD2|8932|methyl-CpG binding domain protein 2##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2	0.077775	0.0	
chr19	50179007	50179103	reg1006268.p2	3.963	+	AB590882 TSC_hg19_v1_chr19_+_50169270 BC007724	-9868	+	TSC_hg19_v1_chr19_-_50169088 BC000660 AK314421 BC009395 AK057577 AK292027 NM_001197122 NM_001197123 NM_001197124 NM_001197125 NM_001197126 NM_001197127 NM_001197128 NM_001571	-9976	-	TSC_hg19_v1_chr19_-_50168868 Z56281 HM357932 HM357933 HM357934 HM357935 HM357936 HM357937	-10142	-	AK304660 NM_001207042 NM_001536 NM_198318 TSC_hg19_v1_chr19_+_50180491	1394	+	AK295973 TSC_hg19_v1_chr19_+_50180493 AB590883 BC019268 AY775289 D66904 Y10805 Y10806 Y10807 BC109282 BC109283	1466	+	BC032764 NM_001101340	12875	+	BC007724|BCL2L12|83596|BCL2-like 12 (proline rich)##BC000660|IRF3|3661|interferon regulatory factor 3##AK314421|IRF3|3661|interferon regulatory factor 3##BC009395|IRF3|3661|interferon regulatory factor 3##AK057577|IRF3|3661|interferon regulatory factor 3##AK292027|IRF3|3661|interferon regulatory factor 3##NM_001197122|IRF3|3661|interferon regulatory factor 3##NM_001197123|IRF3|3661|interferon regulatory factor 3##NM_001197124|IRF3|3661|interferon regulatory factor 3##NM_001197125|IRF3|3661|interferon regulatory factor 3##NM_001197126|IRF3|3661|interferon regulatory factor 3##NM_001197127|IRF3|3661|interferon regulatory factor 3##NM_001197128|IRF3|3661|interferon regulatory factor 3##NM_001571|IRF3|3661|interferon regulatory factor 3##Z56281|IRF3|3661|interferon regulatory factor 3##HM357932|IRF3|3661|interferon regulatory factor 3##HM357933|IRF3|3661|interferon regulatory factor 3##HM357934|IRF3|3661|interferon regulatory factor 3##HM357935|IRF3|3661|interferon regulatory factor 3##HM357936|IRF3|3661|interferon regulatory factor 3##HM357937|IRF3|3661|interferon regulatory factor 3##AK304660|PRMT1|3276|protein arginine methyltransferase 1##NM_001207042|PRMT1|3276|protein arginine methyltransferase 1##NM_001536|PRMT1|3276|protein arginine methyltransferase 1##NM_198318|PRMT1|3276|protein arginine methyltransferase 1##AK295973|PRMT1|3276|protein arginine methyltransferase 1##BC019268|PRMT1|3276|protein arginine methyltransferase 1##AY775289|PRMT1|3276|protein arginine methyltransferase 1##D66904|PRMT1|3276|protein arginine methyltransferase 1##Y10805|PRMT1|3276|protein arginine methyltransferase 1##Y10806|PRMT1|3276|protein arginine methyltransferase 1##Y10807|PRMT1|3276|protein arginine methyltransferase 1##BC109282|PRMT1|3276|protein arginine methyltransferase 1##BC109283|PRMT1|3276|protein arginine methyltransferase 1##BC032764|C19orf76|199800|chromosome 19 open reading frame 76##NM_001101340|C19orf76|199800|chromosome 19 open reading frame 76	1.041632	0.0	
chr19	6580468	6580574	reg1015038.p2	3.963	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-49495	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-78204	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-98738	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	10511	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	10585	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	10637	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.0	0.0	
chr22	42570199	42570311	reg1014880.p1	3.963	+	AK308211 TSC_hg19_v1_chr22_-_42526882 AK309600 NM_000106 NM_001025161	-43374	-	AB463001 CU013213 CU013501 M20403 X08006 BC066877 BC067432 TSC_hg19_v1_chr22_-_42526809 BC106757 BC106758 BC126858 CR456430 BC075023 BC075024	-43448	-	TSC_hg19_v1_chr22_+_42486980 AK123630 BC039542	-83229	+	AB527391 NM_005650 NM_181492	41122	-	BC038245 TSC_hg19_v1_chr22_-_42765218	194947	-	AB463140 CU013214 CU013502 TSC_hg19_v1_chr22_-_42828365 AY247409 BC038241 AY121370 CT841509 NM_145912	258126	-	AK308211|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK309600|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_000106|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##NM_001025161|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013213|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CU013501|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##M20403|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##X08006|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC066877|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC067432|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106757|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC106758|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC126858|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##CR456430|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075023|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##BC075024|CYP2D6|1565|cytochrome P450, family 2, subfamily D, polypeptide 6##AK123630|LOC100132273|100132273|uncharacterized LOC100132273##BC039542|LOC100132273|100132273|uncharacterized LOC100132273##NM_005650|TCF20|6942|transcription factor 20 (AR1)##NM_181492|TCF20|6942|transcription factor 20 (AR1)##CU013214|NFAM1|150372|NFAT activating protein with ITAM motif 1##CU013502|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY247409|NFAM1|150372|NFAT activating protein with ITAM motif 1##BC038241|NFAM1|150372|NFAT activating protein with ITAM motif 1##AY121370|NFAM1|150372|NFAT activating protein with ITAM motif 1##CT841509|NFAM1|150372|NFAT activating protein with ITAM motif 1##NM_145912|NFAM1|150372|NFAT activating protein with ITAM motif 1	0.020925	0.0	
chr9	117129108	117129174	reg1004746.p1	3.963	+	BC042202 TSC_hg19_v1_chr9_-_117111294	-17852	-	NM_000608 AK312226 BC015964 BC056239 AK303760 CR456930 CU677539	-37015	+	NM_000607 X02544 AK316207 AK312035 BC026238 BC007032 BC104818 BC104820 BC143313 BC143314 M13692 AB463987 BT019790 CU693168	-43784	+	AY703041 AY703042 AK131082 AK160382 TSC_hg19_v1_chr9_-_117150263 AB075848	21149	-	AY703040 BC055285 NM_030767	27543	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	31610	-	BC042202|AKNA|80709|AT-hook transcription factor##NM_000608|ORM2|5005|orosomucoid 2##AK312226|ORM2|5005|orosomucoid 2##BC015964|ORM2|5005|orosomucoid 2##BC056239|ORM2|5005|orosomucoid 2##AK303760|ORM2|5005|orosomucoid 2##CR456930|ORM2|5005|orosomucoid 2##NM_000607|ORM1|5004|orosomucoid 1##X02544|ORM1|5004|orosomucoid 1##AK316207|ORM1|5004|orosomucoid 1##AK312035|ORM1|5004|orosomucoid 1##BC026238|ORM1|5004|orosomucoid 1##BC007032|ORM1|5004|orosomucoid 1##BC104818|ORM1|5004|orosomucoid 1##BC104820|ORM1|5004|orosomucoid 1##BC143313|ORM1|5004|orosomucoid 1##BC143314|ORM1|5004|orosomucoid 1##M13692|ORM1|5004|orosomucoid 1##BT019790|ORM1|5004|orosomucoid 1##AY703041|AKNA|80709|AT-hook transcription factor##AY703042|AKNA|80709|AT-hook transcription factor##AK131082|AKNA|80709|AT-hook transcription factor##AK160382|AKNA|80709|AT-hook transcription factor##AB075848|AKNA|80709|AT-hook transcription factor##AY703040|AKNA|80709|AT-hook transcription factor##BC055285|AKNA|80709|AT-hook transcription factor##NM_030767|AKNA|80709|AT-hook transcription factor##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor	0.667646	0.0	
chr9	5590923	5591082	reg1018941.p2	3.963	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-80339	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-140495	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-153122	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	38125	+	BC036853 TSC_hg19_v1_chr9_-_5630098	39088	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	241949	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.993197	0.0	
chr11	64846708	64846782	reg1014203.p1	3.962	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	-20743	-	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	-38327	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	-38364	+	DQ893251 DQ896580 TSC_hg19_v1_chr11_-_64851515 BC011000 AK291490	4755	-	TSC_hg19_v1_chr11_-_64851564 NM_080668	4840	-	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	4961	+	AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##NM_013299|SAC3D1|29901|SAC3 domain containing 1##DQ893251|CDCA5|113130|cell division cycle associated 5##DQ896580|CDCA5|113130|cell division cycle associated 5##BC011000|CDCA5|113130|cell division cycle associated 5##AK291490|CDCA5|113130|cell division cycle associated 5##NM_080668|CDCA5|113130|cell division cycle associated 5##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1	0.0	0.0	
chr1	1760227	1760316	reg1005133.p2	3.962	+	TSC_hg19_v1_chr1_-_1711471 AF250320 NM_001198994	-48791	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	-50002	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	-50385	-	TSC_hg19_v1_chr1_-_1822437 BC004186 X04526 AK295607 BC140714 BC171773	62181	-	TSC_hg19_v1_chr1_-_1822496 BC008991	62224	-	AK312614 TSC_hg19_v1_chr1_-_1822502	62231	-	AF250320|NADK|65220|NAD kinase##NM_001198994|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC004186|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##X04526|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##BC140714|CDK11B|984|cyclin-dependent kinase 11B##BC171773|CDK11B|984|cyclin-dependent kinase 11B##BC008991|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##AK312614|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1	0.0	0.0	
chr15	49447864	49447981	reg1016256.p1	3.962	+	AF120268 L40388 TSC_hg19_v1_chr15_-_49447811 AB462991 CR542063 CU680378 EU446744 EU831466 EU831553 AK222590 AB209799 AF100762 AF212227 AF084260 BC012629 AK312643 AK295598 NM_001143887 NM_004236	-113	-	CU689588 AB385300 TSC_hg19_v1_chr15_-_49338644 D87445 AK307480 AK308183 BC008635 BC033001 NM_001193489 NM_014701	-109286	-	BC033907 NM_203349	-192282	-	TSC_hg19_v1_chr15_+_49447990 AF461816 AL832745 NM_001001556	69	+	TSC_hg19_v1_chr15_+_49462423 NM_002044 AK301361 BC005141 AK098049 AK316440 M84443 BT006901 CU675015 DQ890583 DQ893742	14541	+	NM_002009 BC010956 AK313160 M60828 S81661	267494	+	AF120268|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##L40388|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##CR542063|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##EU446744|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##EU831466|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##EU831553|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AK222590|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AB209799|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AF100762|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AF212227|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AF084260|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##BC012629|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AK312643|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##AK295598|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##NM_001143887|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##NM_004236|COPS2|9318|COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)##D87445|SECISBP2L|9728|SECIS binding protein 2-like##AK307480|SECISBP2L|9728|SECIS binding protein 2-like##AK308183|SECISBP2L|9728|SECIS binding protein 2-like##BC008635|SECISBP2L|9728|SECIS binding protein 2-like##BC033001|SECISBP2L|9728|SECIS binding protein 2-like##NM_001193489|SECISBP2L|9728|SECIS binding protein 2-like##NM_014701|SECISBP2L|9728|SECIS binding protein 2-like##BC033907|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##NM_203349|SHC4|399694|SHC (Src homology 2 domain containing) family, member 4##AF461816|GALK2|2585|galactokinase 2##AL832745|GALK2|2585|galactokinase 2##NM_001001556|GALK2|2585|galactokinase 2##NM_002044|GALK2|2585|galactokinase 2##AK301361|GALK2|2585|galactokinase 2##BC005141|GALK2|2585|galactokinase 2##AK098049|GALK2|2585|galactokinase 2##AK316440|GALK2|2585|galactokinase 2##M84443|GALK2|2585|galactokinase 2##BT006901|GALK2|2585|galactokinase 2##DQ890583|GALK2|2585|galactokinase 2##DQ893742|GALK2|2585|galactokinase 2##NM_002009|FGF7|2252|fibroblast growth factor 7##BC010956|FGF7|2252|fibroblast growth factor 7##AK313160|FGF7|2252|fibroblast growth factor 7##M60828|FGF7|2252|fibroblast growth factor 7##S81661|FGF7|2252|fibroblast growth factor 7	0.0	0.0	
chr2	223654237	223654347	reg1014054.p2	3.962	+	TSC_hg19_v1_chr2_+_223536376 AF384163 NM_058165	-117883	+	TSC_hg19_v1_chr2_-_223520807 AK294158 BC006502 AF042346 CU676064 BC011261 AK001025 BC008434 BC017783 D84430 AK316497 AK291531 AF161521 BC022273 NM_005687	-133498	-	TSC_hg19_v1_chr2_+_223289285 AF542512 BC134342 NM_152386 BC106905 BC114513 BC106904	-364985	+	TSC_hg19_v1_chr2_+_223725753 NM_004457 NM_203372 BC041692 AK314621 AB061712	71455	+	NM_080671 TSC_hg19_v1_chr2_+_223916907 DQ192293 AK313203 BC014429 AY065987	262605	+	M25756 TSC_hg19_v1_chr2_-_224467083 AK298828 AK312452	812774	-	AF384163|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##NM_058165|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##AK294158|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC006502|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF042346|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC011261|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK001025|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC008434|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC017783|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##D84430|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK316497|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK291531|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF161521|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC022273|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##NM_005687|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF542512|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC134342|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_152386|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106905|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC114513|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106904|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_004457|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_203372|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##BC041692|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AK314621|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AB061712|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_080671|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##DQ192293|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AK313203|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##BC014429|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AY065987|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##M25756|SCG2|7857|secretogranin II##AK298828|SCG2|7857|secretogranin II##AK312452|SCG2|7857|secretogranin II	0.5355	0.0	
chr5	171577771	171577898	reg1012992.p2	3.962	+	BC026213 NM_012300 NM_033644 NM_033645	-143958	-	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	-144190	-	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	-144306	-	AB015718 TSC_hg19_v1_chr5_-_171615170	37304	-	AK307943 TSC_hg19_v1_chr5_-_171615203	37369	-	TSC_hg19_v1_chr5_-_171615241 BC070077 AK313350	37439	-	BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11##AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##AB015718|STK10|6793|serine/threonine kinase 10##AK307943|STK10|6793|serine/threonine kinase 10##BC070077|STK10|6793|serine/threonine kinase 10##AK313350|STK10|6793|serine/threonine kinase 10	0.0	0.0	
chr5	76070434	76070614	reg1008945.p2	3.962	+	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	-58568	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	-151379	-	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	-371408	+	NM_005242 BC018130 TSC_hg19_v1_chr5_+_76114854 U34038	44328	+	TSC_hg19_v1_chr5_+_76114883 BC012453 AY336105 BT009856 CU676194 CU680330 DQ890966 DQ894139	44420	+	BC022320 NM_130772	75301	+	AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_005242|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC018130|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##U34038|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC012453|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##AY336105|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BT009856|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ890966|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ894139|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC022320|S100Z|170591|S100 calcium binding protein Z##NM_130772|S100Z|170591|S100 calcium binding protein Z	0.0	0.988414	CTCF.p2:55:0.988
chr6	149805904	149805996	reg1000542.p1	3.962	+	AY340238 NM_001002255 BC130305 HQ258040	-84442	+	AK315038 NM_015093 AK307650	-166509	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	-166847	+	TSC_hg19_v1_chr6_-_149806031 AK127932	117	-	TSC_hg19_v1_chr6_-_149806151 AB458221 AB458222 BC157832 NM_207360	193	-	TSC_hg19_v1_chr6_-_149867153 CU676802 GQ129364 GQ129365 BC064134	61194	-	AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK127932|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458221|ZC3H12D|340152|zinc finger CCCH-type containing 12D##AB458222|ZC3H12D|340152|zinc finger CCCH-type containing 12D##BC157832|ZC3H12D|340152|zinc finger CCCH-type containing 12D##NM_207360|ZC3H12D|340152|zinc finger CCCH-type containing 12D##GQ129364|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##GQ129365|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4##BC064134|PPIL4|85313|peptidylprolyl isomerase (cyclophilin)-like 4	0.0	0.0	
chr10	94050726	94050821	reg1013137.p1	3.961	+	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-47754	-	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-367081	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-367257	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	63	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	281	+	AK302578 AK093287 AK316407 AX748033 NM_001165946	206720	-	AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme	0.0	0.128503	
chr11	122752950	122753088	reg1014389.p1	3.961	+	BC070266 AK313578 AF001622 NM_019604	-43790	+	TSC_hg19_v1_chr11_+_122526429 NM_032873 AK075203 BC007541 AK222843 AK222846 AB075839 CU675695	-226472	+	BC130361 BC130363 AF303179 NM_001001786	-766158	-	AK097534 BC068507 NM_024806 NM_199124	412	+	AB231738 NM_001098169	99337	-	AB034951 BC016179 BC016660 BC019816 AF352832 TSC_hg19_v1_chr11_-_122932842 AK222628 AK222785 AK096100 AK129885 AK303935	179805	-	BC070266|CRTAM|56253|cytotoxic and regulatory T cell molecule##AK313578|CRTAM|56253|cytotoxic and regulatory T cell molecule##AF001622|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_019604|CRTAM|56253|cytotoxic and regulatory T cell molecule##NM_032873|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK075203|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC007541|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222843|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AK222846|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##AB075839|UBASH3B|84959|ubiquitin associated and SH3 domain containing B##BC130361|BLID|414899|BH3-like motif containing, cell death inducer##BC130363|BLID|414899|BH3-like motif containing, cell death inducer##AF303179|BLID|414899|BH3-like motif containing, cell death inducer##NM_001001786|BLID|414899|BH3-like motif containing, cell death inducer##AK097534|C11orf63|79864|chromosome 11 open reading frame 63##BC068507|C11orf63|79864|chromosome 11 open reading frame 63##NM_024806|C11orf63|79864|chromosome 11 open reading frame 63##NM_199124|C11orf63|79864|chromosome 11 open reading frame 63##AB231738|BSX|390259|brain-specific homeobox##NM_001098169|BSX|390259|brain-specific homeobox##AB034951|HSPA8|3312|heat shock 70kDa protein 8##BC016179|HSPA8|3312|heat shock 70kDa protein 8##BC016660|HSPA8|3312|heat shock 70kDa protein 8##BC019816|HSPA8|3312|heat shock 70kDa protein 8##AF352832|HSPA8|3312|heat shock 70kDa protein 8##AK222628|HSPA8|3312|heat shock 70kDa protein 8##AK222785|HSPA8|3312|heat shock 70kDa protein 8##AK096100|HSPA8|3312|heat shock 70kDa protein 8##AK129885|HSPA8|3312|heat shock 70kDa protein 8##AK303935|HSPA8|3312|heat shock 70kDa protein 8	0.0	0.0	
chr3	53860302	53860402	reg1014098.p1	3.961	+	NM_000720 NM_001128839 NM_001128840 M83566 EU363339	-331241	+	TSC_hg19_v1_chr3_+_53528709 M76558	-331693	+	TSC_hg19_v1_chr3_-_53381571 AB590177 CU675659 DQ893260 DQ896589 BC007439 AK295205 AB075507 AK001969 AY146651 AJ275986 NM_018403	-478759	-	TSC_hg19_v1_chr3_-_53880427 NM_018397	20067	-	TSC_hg19_v1_chr3_+_53880576 NM_018725	20220	+	TSC_hg19_v1_chr3_+_53880594 AK307749	20243	+	NM_000720|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128839|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##NM_001128840|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M83566|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##EU363339|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##M76558|CACNA1D|776|calcium channel, voltage-dependent, L type, alpha 1D subunit##DQ893260|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##DQ896589|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##BC007439|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK295205|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AB075507|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AK001969|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AY146651|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##AJ275986|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018403|DCP1A|55802|DCP1 decapping enzyme homolog A (S. cerevisiae)##NM_018397|CHDH|55349|choline dehydrogenase##NM_018725|IL17RB|55540|interleukin 17 receptor B##AK307749|IL17RB|55540|interleukin 17 receptor B	0.980335	0.0	denovo_WM_7:-4:0.838
chr6	163837685	163837857	reg1003412.p2	3.961	+	BC019917 TSC_hg19_v1_chr6_+_163836201 AB590716 DQ323998 EU832828 GQ129383 AY780788 AK027309	-1539	+	TSC_hg19_v1_chr6_+_163835795 AF272349	-1981	+	TSC_hg19_v1_chr6_+_163835675 AB067798 AB067799 AB067800 AB067801 NM_006775 NM_206853 NM_206854 NM_206855	-2099	+	AL050218 TSC_hg19_v1_chr6_+_163984651	146842	+	CU693196 TSC_hg19_v1_chr6_-_165723095 BC026278 NM_144980	1885321	-	AB026816 AF127480 NM_006661 AB020593 NM_001130690 TSC_hg19_v1_chr6_-_166075763	2237925	-	BC019917|QKI|9444|QKI, KH domain containing, RNA binding##DQ323998|QKI|9444|QKI, KH domain containing, RNA binding##EU832828|QKI|9444|QKI, KH domain containing, RNA binding##GQ129383|QKI|9444|QKI, KH domain containing, RNA binding##AY780788|QKI|9444|QKI, KH domain containing, RNA binding##AK027309|QKI|9444|QKI, KH domain containing, RNA binding##AF272349|QKI|9444|QKI, KH domain containing, RNA binding##AB067798|QKI|9444|QKI, KH domain containing, RNA binding##AB067799|QKI|9444|QKI, KH domain containing, RNA binding##AB067800|QKI|9444|QKI, KH domain containing, RNA binding##AB067801|QKI|9444|QKI, KH domain containing, RNA binding##NM_006775|QKI|9444|QKI, KH domain containing, RNA binding##NM_206853|QKI|9444|QKI, KH domain containing, RNA binding##NM_206854|QKI|9444|QKI, KH domain containing, RNA binding##NM_206855|QKI|9444|QKI, KH domain containing, RNA binding##AL050218|QKI|9444|QKI, KH domain containing, RNA binding##BC026278|C6orf118|168090|chromosome 6 open reading frame 118##NM_144980|C6orf118|168090|chromosome 6 open reading frame 118##AB026816|PDE10A|10846|phosphodiesterase 10A##AF127480|PDE10A|10846|phosphodiesterase 10A##NM_006661|PDE10A|10846|phosphodiesterase 10A##AB020593|PDE10A|10846|phosphodiesterase 10A##NM_001130690|PDE10A|10846|phosphodiesterase 10A	0.0	0.0	
chr10	119163153	119163263	reg1016983.p1	3.960	+	CU688476 TSC_hg19_v1_chr10_-_119134939 BC012186 BC028375 NM_173791 AK091746 AX747159 BC033019	-28327	-	NM_003054 BC030593 TSC_hg19_v1_chr10_+_119000626 AK314997 L23205 L09118 X71354 L14269 BC108927 BC108928	-162558	+	AB087138 AB464053 NM_181840	-206209	+	AK123533 BC040186 TSC_hg19_v1_chr10_-_119301978 AY117413	138708	-	AF301598 NM_001165924 NM_004098	138747	+	TSC_hg19_v1_chr10_+_119302713 AB463605	139535	+	BC012186|PDZD8|118987|PDZ domain containing 8##BC028375|PDZD8|118987|PDZ domain containing 8##NM_173791|PDZD8|118987|PDZ domain containing 8##AK091746|PDZD8|118987|PDZ domain containing 8##BC033019|PDZD8|118987|PDZ domain containing 8##NM_003054|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC030593|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##AK314997|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L23205|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L09118|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##X71354|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##L14269|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC108927|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##BC108928|SLC18A2|6571|solute carrier family 18 (vesicular monoamine), member 2##AB087138|KCNK18|338567|potassium channel, subfamily K, member 18##NM_181840|KCNK18|338567|potassium channel, subfamily K, member 18##AK123533|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##BC040186|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AY117413|EMX2OS|196047|EMX2 opposite strand/antisense RNA (non-protein coding)##AF301598|EMX2|2018|empty spiracles homeobox 2##NM_001165924|EMX2|2018|empty spiracles homeobox 2##NM_004098|EMX2|2018|empty spiracles homeobox 2	0.999607	0.0	
chr12	118657762	118657865	reg1011360.p2	3.960	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	-83835	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	-83890	+	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	-83938	+	AF181985 BC002756 TSC_hg19_v1_chr12_-_118810699 AK289558	152815	-	TSC_hg19_v1_chr12_-_118810713 NM_016281	152917	-	TSC_hg19_v1_chr12_+_118814359 BC098404 NM_022491 BX647687 AK024460 AB464255	156589	+	X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##AF181985|TAOK3|51347|TAO kinase 3##BC002756|TAOK3|51347|TAO kinase 3##AK289558|TAOK3|51347|TAO kinase 3##NM_016281|TAOK3|51347|TAO kinase 3##BC098404|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##NM_022491|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##BX647687|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)##AK024460|SUDS3|64426|suppressor of defective silencing 3 homolog (S. cerevisiae)	0.0	0.0	
chr1	224645323	224645460	reg1011132.p2	3.960	+	AB209887 NM_001115113 NM_025160	-23391	-	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	-23631	-	BC000573 TSC_hg19_v1_chr1_+_224544609 AK222634 BX649076 AM392966 AM393151 AM393502 DQ891901 DQ895087	-100780	+	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	158788	+	TSC_hg19_v1_chr1_+_225117383 NM_001145154 NM_001373 NM_144989 BC119716 BC119717 BC042869	471974	+	AK222834 TSC_hg19_v1_chr1_-_225615757 L25931 AB209514 BC020079 AK303589 AK312258	970338	-	AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##BC000573|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK222634|CNIH4|29097|cornichon homolog 4 (Drosophila)##BX649076|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM392966|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393151|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393502|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ891901|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ895087|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_001145154|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_001373|DNAH14|127602|dynein, axonemal, heavy chain 14##NM_144989|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119716|DNAH14|127602|dynein, axonemal, heavy chain 14##BC119717|DNAH14|127602|dynein, axonemal, heavy chain 14##BC042869|DNAH14|127602|dynein, axonemal, heavy chain 14##AK222834|LBR|3930|lamin B receptor##L25931|LBR|3930|lamin B receptor##AB209514|LBR|3930|lamin B receptor##BC020079|LBR|3930|lamin B receptor##AK303589|LBR|3930|lamin B receptor##AK312258|LBR|3930|lamin B receptor	0.0	0.89011	CTCF.p2:20:0.890
chr12	7079832	7079917	reg1015427.p1	3.960	+	TSC_hg19_v1_chr12_-_7079814 AB528395 DQ891808 EU176626 BC014766 BC013228 AF178980 AF150962	-153	-	TSC_hg19_v1_chr12_+_7060554 AK309037 M74903 AF178946	-19272	+	TSC_hg19_v1_chr12_+_7060550 AK290421	-19326	+	TSC_hg19_v1_chr12_-_7079828 AK298217 AK301316 AF126021 NM_007273 BC110322 NM_001144831	1	-	NM_006331 BC055314 TSC_hg19_v1_chr12_+_7080072 AK298207	135	+	TSC_hg19_v1_chr12_+_7080078 AK291597 AK307177	203	+	DQ891808|PHB2|11331|prohibitin 2##EU176626|PHB2|11331|prohibitin 2##BC014766|PHB2|11331|prohibitin 2##BC013228|PHB2|11331|prohibitin 2##AF178980|PHB2|11331|prohibitin 2##AF150962|PHB2|11331|prohibitin 2##M74903|PTPN6|5777|protein tyrosine phosphatase, non-receptor type 6##AF178946|PTPN6|5777|protein tyrosine phosphatase, non-receptor type 6##AK290421|PTPN6|5777|protein tyrosine phosphatase, non-receptor type 6##AK298217|PHB2|11331|prohibitin 2##AK301316|PHB2|11331|prohibitin 2##AF126021|PHB2|11331|prohibitin 2##NM_007273|PHB2|11331|prohibitin 2##BC110322|PHB2|11331|prohibitin 2##NM_001144831|PHB2|11331|prohibitin 2##NM_006331|EMG1|10436|EMG1 nucleolar protein homolog (S. cerevisiae)##BC055314|EMG1|10436|EMG1 nucleolar protein homolog (S. cerevisiae)##AK298207|EMG1|10436|EMG1 nucleolar protein homolog (S. cerevisiae)##AK291597|EMG1|10436|EMG1 nucleolar protein homolog (S. cerevisiae)	0.0	0.010574	
chr12	94621034	94621148	reg1016375.p1	3.960	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	-78587	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-549908	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-655490	-	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	232440	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	232551	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	232641	-	AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41	0.0	0.0	
chr3	183301591	183301771	reg1009809.p2	3.960	+	AF441792 CU689348 DQ894788 EU176275 TSC_hg19_v1_chr3_-_183273495 AK097125 AK314473 BX648370 BC032348 NM_130446	-28229	-	TSC_hg19_v1_chr3_+_183165436 AK057000	-136251	+	NM_015078 BC064632 AK124500 AK310962	-155742	-	BC142993 TSC_hg19_v1_chr3_+_183353410 AK026326 AY422472 BX648466 BX648812 NM_017644	51719	+	TSC_hg19_v1_chr3_+_183415597 AB033023 BC150273 NM_018023	113941	+	TSC_hg19_v1_chr3_-_183543366 BC006434 AK022810 NM_024871	241688	-	AF441792|KLHL6|89857|kelch-like 6 (Drosophila)##DQ894788|KLHL6|89857|kelch-like 6 (Drosophila)##EU176275|KLHL6|89857|kelch-like 6 (Drosophila)##AK097125|KLHL6|89857|kelch-like 6 (Drosophila)##AK314473|KLHL6|89857|kelch-like 6 (Drosophila)##BX648370|KLHL6|89857|kelch-like 6 (Drosophila)##BC032348|KLHL6|89857|kelch-like 6 (Drosophila)##NM_130446|KLHL6|89857|kelch-like 6 (Drosophila)##AK057000|LOC100505687|100505687|uncharacterized LOC100505687##NM_015078|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC064632|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK124500|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##AK310962|MCF2L2|23101|MCF.2 cell line derived transforming sequence-like 2##BC142993|KLHL24|54800|kelch-like 24 (Drosophila)##AK026326|KLHL24|54800|kelch-like 24 (Drosophila)##AY422472|KLHL24|54800|kelch-like 24 (Drosophila)##BX648466|KLHL24|54800|kelch-like 24 (Drosophila)##BX648812|KLHL24|54800|kelch-like 24 (Drosophila)##NM_017644|KLHL24|54800|kelch-like 24 (Drosophila)##AB033023|YEATS2|55689|YEATS domain containing 2##BC150273|YEATS2|55689|YEATS domain containing 2##NM_018023|YEATS2|55689|YEATS domain containing 2##BC006434|MAP6D1|79929|MAP6 domain containing 1##AK022810|MAP6D1|79929|MAP6 domain containing 1##NM_024871|MAP6D1|79929|MAP6 domain containing 1	0.0	0.0	
chr8	59988750	59988836	reg1011787.p2	3.960	+	NM_003580 TSC_hg19_v1_chr8_-_59572413	-416382	-	BC041124 TSC_hg19_v1_chr8_-_59572386	-416407	-	TSC_hg19_v1_chr8_-_59572336 AK292679 AK313991	-416480	-	AB385385 DQ891665 DQ894852 AK000971 BC016665 AK302331 AB018351 NM_014729 TSC_hg19_v1_chr8_-_60031796	42879	-	BC015531 BC108929 BC082971 TSC_hg19_v1_chr8_-_61193958 BC069744 AK090655 AK289470 AK314538 AY075022 NM_004056	1205128	-	TSC_hg19_v1_chr8_+_61429488 NM_001242644 NM_002865	1440647	+	NM_003580|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##BC041124|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK292679|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##AK313991|NSMAF|8439|neutral sphingomyelinase (N-SMase) activation associated factor##DQ891665|TOX|9760|thymocyte selection-associated high mobility group box##DQ894852|TOX|9760|thymocyte selection-associated high mobility group box##AK000971|TOX|9760|thymocyte selection-associated high mobility group box##BC016665|TOX|9760|thymocyte selection-associated high mobility group box##AK302331|TOX|9760|thymocyte selection-associated high mobility group box##AB018351|TOX|9760|thymocyte selection-associated high mobility group box##NM_014729|TOX|9760|thymocyte selection-associated high mobility group box##BC015531|CA8|767|carbonic anhydrase VIII##BC108929|CA8|767|carbonic anhydrase VIII##BC069744|CA8|767|carbonic anhydrase VIII##AK090655|CA8|767|carbonic anhydrase VIII##AK289470|CA8|767|carbonic anhydrase VIII##AK314538|CA8|767|carbonic anhydrase VIII##AY075022|CA8|767|carbonic anhydrase VIII##NM_004056|CA8|767|carbonic anhydrase VIII##NM_001242644|RAB2A|5862|RAB2A, member RAS oncogene family##NM_002865|RAB2A|5862|RAB2A, member RAS oncogene family	0.0	0.0	
chr10	6309257	6309421	reg1014181.p2	3.959	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-64463	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-122427	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-122455	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	312922	-	TSC_hg19_v1_chr10_+_6622460 AY007155	313141	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	1141911	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.0	
chr10	73742431	73742564	reg1017863.p1	3.959	+	TSC_hg19_v1_chr10_+_73723993 AB017915 NM_004273 AB012192	-18440	+	TSC_hg19_v1_chr10_-_73611059 NM_001042465 NM_001042466 NM_002778	-131406	-	AK299184 TSC_hg19_v1_chr10_-_73611043	-131454	-	AK292328 TSC_hg19_v1_chr10_-_73848270 AK294008 AK307091	105771	-	TSC_hg19_v1_chr10_-_73848286 AY358921	105785	-	TSC_hg19_v1_chr10_-_73848310 AJ001453	105843	-	AB017915|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_004273|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##AB012192|CHST3|9469|carbohydrate (chondroitin 6) sulfotransferase 3##NM_001042465|PSAP|5660|prosaposin##NM_001042466|PSAP|5660|prosaposin##NM_002778|PSAP|5660|prosaposin##AK299184|PSAP|5660|prosaposin##AK292328|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK294008|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AK307091|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AY358921|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2##AJ001453|SPOCK2|9806|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2	0.575084	0.0	denovo_WM_7:16:0.575
chr12	68474474	68474594	reg1011550.p2	3.959	+	TSC_hg19_v1_chr12_+_68042500 AK313937 NM_003583 NM_006482 BC005809 BC006375 Y13493	-431911	+	BC050341 TSC_hg19_v1_chr12_+_67663413 AB384533 EU832277 EU832362	-811104	+	TSC_hg19_v1_chr12_+_67663165 AL136810 AK096010 AB020636 AK314358	-811362	+	X62468 X62469 X62470 X62471 X62472 X62473 X62474 AF506749 AY044154 AY255839 X87308 AB451324 AB451453 AB590804 AY255837 AM903379 V00543 X13274 NM_000619 X01992 BC070256	78888	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	145018	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	172770	-	AK313937|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_003583|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##NM_006482|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC005809|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC006375|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##Y13493|DYRK2|8445|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2##BC050341|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832277|CAND1|55832|cullin-associated and neddylation-dissociated 1##EU832362|CAND1|55832|cullin-associated and neddylation-dissociated 1##AL136810|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK096010|CAND1|55832|cullin-associated and neddylation-dissociated 1##AB020636|CAND1|55832|cullin-associated and neddylation-dissociated 1##AK314358|CAND1|55832|cullin-associated and neddylation-dissociated 1##X62468|IFNG|3458|interferon, gamma##X62469|IFNG|3458|interferon, gamma##X62470|IFNG|3458|interferon, gamma##X62471|IFNG|3458|interferon, gamma##X62472|IFNG|3458|interferon, gamma##X62473|IFNG|3458|interferon, gamma##X62474|IFNG|3458|interferon, gamma##AF506749|IFNG|3458|interferon, gamma##AY044154|IFNG|3458|interferon, gamma##AY255839|IFNG|3458|interferon, gamma##X87308|IFNG|3458|interferon, gamma##AB451324|IFNG|3458|interferon, gamma##AB451453|IFNG|3458|interferon, gamma##AY255837|IFNG|3458|interferon, gamma##AM903379|IFNG|3458|interferon, gamma##V00543|IFNG|3458|interferon, gamma##X13274|IFNG|3458|interferon, gamma##NM_000619|IFNG|3458|interferon, gamma##X01992|IFNG|3458|interferon, gamma##BC070256|IFNG|3458|interferon, gamma##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22	0.253104	0.0	denovo_WM_7:-90:0.219
chr19	4369185	4369365	reg1008251.p2	3.959	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-25716	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-26525	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-30477	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	31118	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	31278	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	33441	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.0	0.0	
chr2	197140471	197140592	reg1015065.p1	3.959	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-104213	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-104252	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-207036	-	BC117194 BC117198 AB037722 NM_020760	316761	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	363826	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	523882	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.99383	0.0	denovo_WM_7:-48:0.519	denovo_WM_7:-49:0.445
chr6	106431212	106431337	reg1015792.p1	3.959	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-580279	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-580316	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-580428	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	102922	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	102961	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	115530	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.97961	0.0	denovo_WM_7:88:0.486	denovo_WM_7:90:0.426
chr9	133921973	133922153	reg1007761.p1	3.959	+	AF041835 NM_006059 TSC_hg19_v1_chr9_+_133884573 AK075536	-37513	+	AK300287 NM_001145106 TSC_hg19_v1_chr9_-_133814549	-107572	-	BC032953 NM_032843 TSC_hg19_v1_chr9_-_133814253	-107819	-	NM_001185095 NM_001185096 NM_031426 TSC_hg19_v1_chr9_+_133971890	49815	+	TSC_hg19_v1_chr9_+_133971917 AY359067 AK057789 AK314600 AK022845 AK128526 AK091912 AL136566 AL833896 BC009826 BC021253 AM392853 AM393301 AM393860	49895	+	TSC_hg19_v1_chr9_+_134000975 BC105998 AK307573 NM_005085 AL832609 X64228 BC045620 BC012500	78911	+	AF041835|LAMC3|10319|laminin, gamma 3##NM_006059|LAMC3|10319|laminin, gamma 3##AK075536|LAMC3|10319|laminin, gamma 3##AK300287|FIBCD1|84929|fibrinogen C domain containing 1##NM_001145106|FIBCD1|84929|fibrinogen C domain containing 1##BC032953|FIBCD1|84929|fibrinogen C domain containing 1##NM_032843|FIBCD1|84929|fibrinogen C domain containing 1##NM_001185095|AIF1L|83543|allograft inflammatory factor 1-like##NM_001185096|AIF1L|83543|allograft inflammatory factor 1-like##NM_031426|AIF1L|83543|allograft inflammatory factor 1-like##AY359067|AIF1L|83543|allograft inflammatory factor 1-like##AK057789|AIF1L|83543|allograft inflammatory factor 1-like##AK314600|AIF1L|83543|allograft inflammatory factor 1-like##AK022845|AIF1L|83543|allograft inflammatory factor 1-like##AK128526|AIF1L|83543|allograft inflammatory factor 1-like##AK091912|AIF1L|83543|allograft inflammatory factor 1-like##AL136566|AIF1L|83543|allograft inflammatory factor 1-like##AL833896|AIF1L|83543|allograft inflammatory factor 1-like##BC009826|AIF1L|83543|allograft inflammatory factor 1-like##BC021253|AIF1L|83543|allograft inflammatory factor 1-like##AM392853|AIF1L|83543|allograft inflammatory factor 1-like##AM393301|AIF1L|83543|allograft inflammatory factor 1-like##AM393860|AIF1L|83543|allograft inflammatory factor 1-like##BC105998|NUP214|8021|nucleoporin 214kDa##AK307573|NUP214|8021|nucleoporin 214kDa##NM_005085|NUP214|8021|nucleoporin 214kDa##AL832609|NUP214|8021|nucleoporin 214kDa##X64228|NUP214|8021|nucleoporin 214kDa##BC045620|NUP214|8021|nucleoporin 214kDa##BC012500|NUP214|8021|nucleoporin 214kDa	0.0	0.495986	CTCF.p2:31:0.496
chr9	24846643	24846750	reg1018867.p2	3.959	+	AB209294 NM_004432	-1020634	-	BC042393 NM_001171195 TSC_hg19_v1_chr9_-_23821847	-1024852	-	TSC_hg19_v1_chr9_-_23821819 BC035004	-1024883	-	BC017510 TSC_hg19_v1_chr9_-_25678278 BC046919 AY168647 BC110824	831637	-	NM_001004125	832159	-	AK131322 NM_001004352	1219976	+	AB209294|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_004432|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC042393|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##NM_001171195|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC035004|ELAVL2|1993|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)##BC017510|TUSC1|286319|tumor suppressor candidate 1##BC046919|TUSC1|286319|tumor suppressor candidate 1##AY168647|TUSC1|286319|tumor suppressor candidate 1##BC110824|TUSC1|286319|tumor suppressor candidate 1##NM_001004125|TUSC1|286319|tumor suppressor candidate 1##AK131322|LOC100506422|100506422|putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323##NM_001004352|LOC100506422|100506422|putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323	0.924223	0.0	denovo_WM_7:-18:0.723
chr16	78802202	78802373	reg1014314.p1	3.958	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-668832	+	NM_001244755	-739302	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-745837	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	832328	-	AF125108 NM_130897 BC054892 BC035232	1772601	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	2035760	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	0.999843	0.0	
chr19	2284254	2284334	reg1014019.p2	3.958	+	AK127680 BC107678 NM_198532	-2117	-	TSC_hg19_v1_chr19_+_2269534 BC100291 BC013037 BC010063 BC081537 BC007247 BC053360 D87914 BC055397 U09202 BC093652 BC112133	-14752	+	TSC_hg19_v1_chr19_+_2269526 BC042364	-14768	+	TSC_hg19_v1_chr19_+_2289998 AK091795 AX747191	5703	+	NM_001101391	23861	-	BC018621 AF182293 TSC_hg19_v1_chr19_-_2328581 AK092837 AX747757 NM_016199	44295	-	AK127680|C19orf35|374872|chromosome 19 open reading frame 35##BC107678|C19orf35|374872|chromosome 19 open reading frame 35##NM_198532|C19orf35|374872|chromosome 19 open reading frame 35##BC100291|OAZ1|4946|ornithine decarboxylase antizyme 1##BC013037|OAZ1|4946|ornithine decarboxylase antizyme 1##BC010063|OAZ1|4946|ornithine decarboxylase antizyme 1##BC081537|OAZ1|4946|ornithine decarboxylase antizyme 1##BC007247|OAZ1|4946|ornithine decarboxylase antizyme 1##BC053360|OAZ1|4946|ornithine decarboxylase antizyme 1##D87914|OAZ1|4946|ornithine decarboxylase antizyme 1##BC055397|OAZ1|4946|ornithine decarboxylase antizyme 1##U09202|OAZ1|4946|ornithine decarboxylase antizyme 1##BC093652|OAZ1|4946|ornithine decarboxylase antizyme 1##BC112133|OAZ1|4946|ornithine decarboxylase antizyme 1##BC042364|OAZ1|4946|ornithine decarboxylase antizyme 1##NM_001101391|LINGO3|645191|leucine rich repeat and Ig domain containing 3##BC018621|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF182293|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_016199|LSM7|51690|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	0.0	0.0	
chr19	44249484	44249622	reg1013853.p2	3.958	+	BC033853 NM_019612 BC066939	-29328	+	NM_001005376 NM_001005377 NM_002659	-75056	-	AF257789 CR456952 AB464026 DQ893017 DQ896262 M83246 TSC_hg19_v1_chr19_-_44174320 AK290774 AY029180 X51675 X74039 BC002788	-75250	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	9467	-	TSC_hg19_v1_chr19_-_44259074 AK022948	9540	-	TSC_hg19_v1_chr19_-_44259117 NM_019108	9575	-	BC033853|IRGC|56269|immunity-related GTPase family, cinema##NM_019612|IRGC|56269|immunity-related GTPase family, cinema##BC066939|IRGC|56269|immunity-related GTPase family, cinema##NM_001005376|PLAUR|5329|plasminogen activator, urokinase receptor##NM_001005377|PLAUR|5329|plasminogen activator, urokinase receptor##NM_002659|PLAUR|5329|plasminogen activator, urokinase receptor##AF257789|PLAUR|5329|plasminogen activator, urokinase receptor##CR456952|PLAUR|5329|plasminogen activator, urokinase receptor##DQ893017|PLAUR|5329|plasminogen activator, urokinase receptor##DQ896262|PLAUR|5329|plasminogen activator, urokinase receptor##M83246|PLAUR|5329|plasminogen activator, urokinase receptor##AK290774|PLAUR|5329|plasminogen activator, urokinase receptor##AY029180|PLAUR|5329|plasminogen activator, urokinase receptor##X51675|PLAUR|5329|plasminogen activator, urokinase receptor##X74039|PLAUR|5329|plasminogen activator, urokinase receptor##BC002788|PLAUR|5329|plasminogen activator, urokinase receptor##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.996252	0.587261	denovo_WM_7:-33:0.760	CTCF.p2:69:0.587
chr2	113534988	113535054	reg1010494.p1	3.958	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	-12799	-	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	-131501	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-192832	+	NM_000575 BC035169	7951	-	X56087 X02532 K02770 M54933 TSC_hg19_v1_chr2_-_113594357 AK313983 BC008678 M15330 NM_000576	59323	-	AF167368 AF200496 NM_014439 NM_173202 NM_173203 NM_173204 BC020637 AB451333 AB451478 AB590279 AF251119 AF251120 AY071840 AY071841 CU676594 DQ891388	135547	+	AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha##X56087|IL1B|3553|interleukin 1, beta##X02532|IL1B|3553|interleukin 1, beta##K02770|IL1B|3553|interleukin 1, beta##M54933|IL1B|3553|interleukin 1, beta##AK313983|IL1B|3553|interleukin 1, beta##BC008678|IL1B|3553|interleukin 1, beta##M15330|IL1B|3553|interleukin 1, beta##NM_000576|IL1B|3553|interleukin 1, beta##AF167368|IL37|27178|interleukin 37##AF200496|IL37|27178|interleukin 37##NM_014439|IL37|27178|interleukin 37##NM_173202|IL37|27178|interleukin 37##NM_173203|IL37|27178|interleukin 37##NM_173204|IL37|27178|interleukin 37##BC020637|IL37|27178|interleukin 37##AB451333|IL37|27178|interleukin 37##AB451478|IL37|27178|interleukin 37##AF251119|IL37|27178|interleukin 37##AF251120|IL37|27178|interleukin 37##AY071840|IL37|27178|interleukin 37##AY071841|IL37|27178|interleukin 37##DQ891388|IL37|27178|interleukin 37	0.0	0.0	
chr5	110568245	110568379	reg1013552.p1	3.958	+	L24959 TSC_hg19_v1_chr5_+_110560081 NM_001744 AK311662 AK312840 BC025687 BC016695 D30742 L17000 AB529005 CU677679 DQ892902 DQ893195 DQ893196 DQ896523 DQ896524 DQ896525 DQ896526	-8363	+	AF385437 NM_139281 BC133025 BC136517 AK095312 TSC_hg19_v1_chr5_+_110428045 AL832494	-140353	+	AY037115 NM_033035	-160923	+	AK054566 NM_139164 TSC_hg19_v1_chr5_-_110848234 AK290312 AK310848 BC019632 AK125317 AK308851 AK315863 AK315869	279890	-	BC042956 TSC_hg19_v1_chr5_-_110848300	279982	-	NM_001142483	523635	-	L24959|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##NM_001744|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AK311662|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AK312840|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##BC025687|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##BC016695|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##D30742|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##L17000|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ892902|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ893195|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ893196|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896523|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896524|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896525|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##DQ896526|CAMK4|814|calcium/calmodulin-dependent protein kinase IV##AF385437|WDR36|134430|WD repeat domain 36##NM_139281|WDR36|134430|WD repeat domain 36##BC133025|WDR36|134430|WD repeat domain 36##BC136517|WDR36|134430|WD repeat domain 36##AK095312|WDR36|134430|WD repeat domain 36##AL832494|WDR36|134430|WD repeat domain 36##AY037115|TSLP|85480|thymic stromal lymphopoietin##NM_033035|TSLP|85480|thymic stromal lymphopoietin##AK054566|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_139164|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK290312|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK310848|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC019632|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK125317|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK308851|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315863|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##AK315869|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##BC042956|STARD4|134429|StAR-related lipid transfer (START) domain containing 4##NM_001142483|C5orf13|9315|chromosome 5 open reading frame 13	0.994333	0.0	denovo_WM_7:-30:0.834
chr5	118749945	118750075	reg1012755.p1	3.958	+	TSC_hg19_v1_chr5_+_118691713 AF099935 AK001850 AF099936 CU675493	-58272	+	BC007014 NM_014350 BC005352 TSC_hg19_v1_chr5_+_118691687	-58392	+	AF070671 TSC_hg19_v1_chr5_+_118604523	-145493	+	TSC_hg19_v1_chr5_+_118788215 NM_000414 NM_001199292 AK301212 AK312449 NM_001199291 BC003098 AK293254 AB208932 X87176 AK299685 AK298075 CU678374 DQ891866 DQ895055	38186	+	AF427126 AY692447 NM_001163991 NM_182761 BC040622 BC128242 BC128243	215306	+	BC011941 TSC_hg19_v1_chr5_-_119740564	990540	-	AF099935|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AK001850|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF099936|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC007014|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_014350|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##BC005352|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##AF070671|TNFAIP8|25816|tumor necrosis factor, alpha-induced protein 8##NM_000414|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199292|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK301212|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK312449|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##NM_001199291|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##BC003098|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK293254|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##X87176|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK299685|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AK298075|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ891866|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##DQ895055|HSD17B4|3295|hydroxysteroid (17-beta) dehydrogenase 4##AF427126|FAM170A|340069|family with sequence similarity 170, member A##AY692447|FAM170A|340069|family with sequence similarity 170, member A##NM_001163991|FAM170A|340069|family with sequence similarity 170, member A##NM_182761|FAM170A|340069|family with sequence similarity 170, member A##BC040622|FAM170A|340069|family with sequence similarity 170, member A##BC128242|FAM170A|340069|family with sequence similarity 170, member A##BC128243|FAM170A|340069|family with sequence similarity 170, member A	0.0	0.0	
chr7	66352167	66352303	reg1013563.p1	3.958	+	TSC_hg19_v1_chr7_+_66205719 AJ250042 AK223329 AK290678	-146505	+	TSC_hg19_v1_chr7_+_66205692 BC015330	-146541	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	-146591	+	TSC_hg19_v1_chr7_+_66386215 AK222774 NM_017994 BC012562 AK000961 BC008675	33941	+	TSC_hg19_v1_chr7_+_66386228 BC041764	33996	+	TSC_hg19_v1_chr7_+_66386238 BC010519	34036	+	AJ250042|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK223329|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK290678|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##AK222774|C7orf42|55069|chromosome 7 open reading frame 42##NM_017994|C7orf42|55069|chromosome 7 open reading frame 42##BC012562|C7orf42|55069|chromosome 7 open reading frame 42##AK000961|C7orf42|55069|chromosome 7 open reading frame 42##BC008675|C7orf42|55069|chromosome 7 open reading frame 42##BC041764|C7orf42|55069|chromosome 7 open reading frame 42##BC010519|C7orf42|55069|chromosome 7 open reading frame 42	1.017772	0.0	denovo_WM_7:17:0.849
chr10	52125097	52125277	reg1006936.p2	3.957	+	AF250847 BC107105 AF449759 NM_001143974 NM_019893	-116847	-	NM_018232	-287302	+	TSC_hg19_v1_chr10_+_51827713 AK304116 BC082258 BC064639	-297465	+	AY332650 AY364088 TSC_hg19_v1_chr10_-_52383684 AY280959 NM_147156	258516	-	AK294369 TSC_hg19_v1_chr10_+_52499704 NM_001079516	374523	+	BC022263 AF209192 AK291982 AK303801 TSC_hg19_v1_chr10_-_52645388	520206	-	AF250847|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##BC107105|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##AF449759|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_001143974|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_019893|ASAH2|56624|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2##NM_018232|FAM21B|55747|family with sequence similarity 21, member B##AK304116|FAM21A|387680|family with sequence similarity 21, member A##BC082258|FAM21A|387680|family with sequence similarity 21, member A##BC064639|FAM21A|387680|family with sequence similarity 21, member A##AY332650|SGMS1|259230|sphingomyelin synthase 1##AY364088|SGMS1|259230|sphingomyelin synthase 1##AY280959|SGMS1|259230|sphingomyelin synthase 1##NM_147156|SGMS1|259230|sphingomyelin synthase 1##NM_001079516|ASAH2B|653308|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B##BC022263|A1CF|29974|APOBEC1 complementation factor##AF209192|A1CF|29974|APOBEC1 complementation factor##AK291982|A1CF|29974|APOBEC1 complementation factor##AK303801|A1CF|29974|APOBEC1 complementation factor	0.0	0.0	
chr14	61969658	61969791	reg1002340.p1	3.957	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-181197	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-221202	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-221530	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	192466	+	FJ790247 NM_001243084	194615	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	259395	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.999544	0.0	
chr2	96828330	96828460	reg1015603.p2	3.957	+	TSC_hg19_v1_chr2_-_96811180 BC007771 L11329 NM_004418	-17236	-	TSC_hg19_v1_chr2_-_96810943 EU832639 EU832716	-17441	-	BC107126 AJ537600 BC107127 NM_001002036	-24222	-	AK054615 CU680552 AK291190 TSC_hg19_v1_chr2_-_96874010 AB527627	45660	-	TSC_hg19_v1_chr2_+_96874144 AK311432	45759	+	AF270647 TSC_hg19_v1_chr2_-_96874561 BC012774 BC014076 BC012793 BC007894 BC009998 BC032106 BC014274 BC003028 BC008894 BC013279	46139	-	BC007771|DUSP2|1844|dual specificity phosphatase 2##L11329|DUSP2|1844|dual specificity phosphatase 2##NM_004418|DUSP2|1844|dual specificity phosphatase 2##EU832639|DUSP2|1844|dual specificity phosphatase 2##EU832716|DUSP2|1844|dual specificity phosphatase 2##BC107126|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##AJ537600|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##BC107127|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##NM_001002036|ASTL|431705|astacin-like metallo-endopeptidase (M12 family)##AK054615|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AK291190|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AF270647|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012774|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014076|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012793|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC007894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC009998|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC032106|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014274|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC003028|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC008894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC013279|STARD7|56910|StAR-related lipid transfer (START) domain containing 7	1.562702	0.0	denovo_WM_7:-17:0.830	denovo_WM_7:-77:0.358
chr6	17835457	17835563	reg1014970.p2	3.957	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	-128608	-	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	-234911	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-441728	+	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	152250	-	TSC_hg19_v1_chr6_-_17987867 BC062673 NM_001105566 NM_001105567 NM_001105568 NM_001243423 NM_022113	152356	-	AY324850 BC103888 BC103889 BC103890 NM_198586	287340	-	Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A##BC062673|KIF13A|63971|kinesin family member 13A##NM_001105566|KIF13A|63971|kinesin family member 13A##NM_001105567|KIF13A|63971|kinesin family member 13A##NM_001105568|KIF13A|63971|kinesin family member 13A##NM_001243423|KIF13A|63971|kinesin family member 13A##NM_022113|KIF13A|63971|kinesin family member 13A##AY324850|NHLRC1|378884|NHL repeat containing 1##BC103888|NHLRC1|378884|NHL repeat containing 1##BC103889|NHLRC1|378884|NHL repeat containing 1##BC103890|NHLRC1|378884|NHL repeat containing 1##NM_198586|NHLRC1|378884|NHL repeat containing 1	3.082104	0.0	denovo_WM_7:-44:0.321	denovo_WM_7:-45:0.555	denovo_WM_7:-59:0.238	denovo_WM_7:-60:0.673	denovo_WM_7:-75:0.812
chr9	6759012	6759144	reg1002795.p1	3.957	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	-1039	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	-1411	+	AK310439 NM_001146696	-38216	+	AL137489 TSC_hg19_v1_chr9_-_7799779 BC009510 AK308643 AK128876 AK292632 NM_033428	1040637	-	TSC_hg19_v1_chr9_+_8713275 AY779046	1954214	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	1974841	-	AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##AL137489|C9orf123|90871|chromosome 9 open reading frame 123##BC009510|C9orf123|90871|chromosome 9 open reading frame 123##AK292632|C9orf123|90871|chromosome 9 open reading frame 123##NM_033428|C9orf123|90871|chromosome 9 open reading frame 123##AY779046|RPL18A|6142|ribosomal protein L18a##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D	0.0	0.0	
chr10	5671884	5672021	reg1012626.p2	3.956	+	AK313934 M58026 NM_005185 BC031889 AB590316	-104967	+	AB590761 AF172852 BC039172 AK222744 NM_017422	-130486	-	TSC_hg19_v1_chr10_+_5488571 NM_005863 AK294244 AK304028 AK315566 AK024919 AJ010046 BC010285 CU679671	-183329	+	TSC_hg19_v1_chr10_-_5708534 CR457302 BC012056 AF403031 AK023196	36574	-	AK292071 TSC_hg19_v1_chr10_-_5708559 AK091935 AX747265 NM_024701	36605	-	TSC_hg19_v1_chr10_+_5726806 CR936780 NM_017782	54871	+	AK313934|CALML3|810|calmodulin-like 3##M58026|CALML3|810|calmodulin-like 3##NM_005185|CALML3|810|calmodulin-like 3##BC031889|CALML3|810|calmodulin-like 3##AF172852|CALML5|51806|calmodulin-like 5##BC039172|CALML5|51806|calmodulin-like 5##AK222744|CALML5|51806|calmodulin-like 5##NM_017422|CALML5|51806|calmodulin-like 5##NM_005863|NET1|10276|neuroepithelial cell transforming 1##AK294244|NET1|10276|neuroepithelial cell transforming 1##AK304028|NET1|10276|neuroepithelial cell transforming 1##AK315566|NET1|10276|neuroepithelial cell transforming 1##AK024919|NET1|10276|neuroepithelial cell transforming 1##AJ010046|NET1|10276|neuroepithelial cell transforming 1##BC010285|NET1|10276|neuroepithelial cell transforming 1##CR457302|ASB13|79754|ankyrin repeat and SOCS box containing 13##BC012056|ASB13|79754|ankyrin repeat and SOCS box containing 13##AF403031|ASB13|79754|ankyrin repeat and SOCS box containing 13##AK023196|ASB13|79754|ankyrin repeat and SOCS box containing 13##AK292071|ASB13|79754|ankyrin repeat and SOCS box containing 13##AK091935|ASB13|79754|ankyrin repeat and SOCS box containing 13##NM_024701|ASB13|79754|ankyrin repeat and SOCS box containing 13##CR936780|FAM208B|54906|family with sequence similarity 208, member B##NM_017782|FAM208B|54906|family with sequence similarity 208, member B	0.0	0.495586	CTCF.p2:38:0.496
chr1	105489305	105489407	reg1015670.p1	3.956	+	NM_004038 NM_001008219 NM_001008218 BC063129 BC070302 AK313275 BC092444 BC132985 BC132987 BC132997 BC144452 BC132995	-1196854	+	NM_001008221 AK292341	-1197078	+	AK292341 NM_001008221	-1250285	-	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	2110009	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	2193386	+	AB023193 TSC_hg19_v1_chr1_+_107683657	2194248	+	NM_004038|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008219|AMY1C|278|amylase, alpha 1C (salivary)##NM_001008218|AMY1B|277|amylase, alpha 1B (salivary)##BC063129|AMY1A|276|amylase, alpha 1A (salivary)##BC070302|AMY1A|276|amylase, alpha 1A (salivary)##AK313275|AMY1A|276|amylase, alpha 1A (salivary)##BC092444|AMY1A|276|amylase, alpha 1A (salivary)##BC132985|AMY1A|276|amylase, alpha 1A (salivary)##BC132987|AMY1A|276|amylase, alpha 1A (salivary)##BC132997|AMY1A|276|amylase, alpha 1A (salivary)##BC144452|AMY1A|276|amylase, alpha 1A (salivary)##BC132995|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##AK292341|AMY1A|276|amylase, alpha 1A (salivary)##NM_001008221|AMY1A|276|amylase, alpha 1A (salivary)##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##AB023193|NTNG1|22854|netrin G1	0.99906	0.0	denovo_WM_7:-41:0.310	denovo_WM_7:-42:0.310	denovo_WM_7:-43:0.310
chr11	63623830	63623994	reg1005069.p2	3.956	+	TSC_hg19_v1_chr11_+_63606599 AK307858	-17308	+	TSC_hg19_v1_chr11_+_63606564 AK225766	-17363	+	TSC_hg19_v1_chr11_+_63606486 AB188493 NM_001039469 NM_001163296 NM_001163297 NM_004954	-17486	+	NM_017490 AK290339 TSC_hg19_v1_chr11_+_63656059 X97630 AY562188	32164	+	BC023587 NM_173587	60403	-	TSC_hg19_v1_chr11_-_63684632 AB593132	60727	-	AK307858|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK225766|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AB188493|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001039469|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163296|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_001163297|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_004954|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##NM_017490|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AK290339|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##X97630|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##AY562188|MARK2|2011|MAP/microtubule affinity-regulating kinase 2##BC023587|RCOR2|283248|REST corepressor 2##NM_173587|RCOR2|283248|REST corepressor 2##AB593132|RCOR2|283248|REST corepressor 2	0.48197	0.0	denovo_WM_7:-60:0.312
chr11	85732223	85732403	reg1001252.p1	3.956	+	AK124113 NM_173556	-166170	+	TSC_hg19_v1_chr11_-_85522185 AB046817 NM_032943 AK296224 AK296740	-210132	-	BC136450 BC144114 BC144115 NM_001162951 NM_001162953	-263270	-	AB451308 BC048259 U45976 BC073961 TSC_hg19_v1_chr11_-_85779975	47585	-	TSC_hg19_v1_chr11_-_85780088 BC064357	47782	-	TSC_hg19_v1_chr11_-_85780127 AB210017 NM_001008660 NM_001206946 NM_007166 AK291414	47811	-	AK124113|CCDC83|220047|coiled-coil domain containing 83##NM_173556|CCDC83|220047|coiled-coil domain containing 83##AB046817|SYTL2|54843|synaptotagmin-like 2##NM_032943|SYTL2|54843|synaptotagmin-like 2##AK296224|SYTL2|54843|synaptotagmin-like 2##AK296740|SYTL2|54843|synaptotagmin-like 2##BC136450|SYTL2|54843|synaptotagmin-like 2##BC144114|SYTL2|54843|synaptotagmin-like 2##BC144115|SYTL2|54843|synaptotagmin-like 2##NM_001162951|SYTL2|54843|synaptotagmin-like 2##NM_001162953|SYTL2|54843|synaptotagmin-like 2##AB451308|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC048259|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##U45976|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC073961|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC064357|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AB210017|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001008660|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206946|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_007166|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AK291414|PICALM|8301|phosphatidylinositol binding clathrin assembly protein	0.737979	0.0	denovo_WM_7:64:0.359
chr12	32213470	32213562	reg1006613.p1	3.956	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	-101122	+	TSC_hg19_v1_chr12_+_32112348 NM_018169	-101185	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	-268312	-	TSC_hg19_v1_chr12_+_32259750 BC010091	46198	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	46657	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	441523	+	AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4	1.888933	0.0	denovo_WM_7:-52:0.229	denovo_WM_7:-53:0.620	denovo_WM_7:-68:0.751
chr15	31593823	31593891	reg1012873.p1	3.956	+	NM_001243538	-70808	-	GQ502181 HM135791 NM_001252020	-140429	-	AF071787 BC033627 BC005892 BC017849 HM135790 BC058286 BC070356 NM_001252024 NM_001252030 NM_002420	-199940	-	TSC_hg19_v1_chr15_+_31619077 AF132599 BC035503 NM_015995 BC010438 BC013946 BC012741 AF150628	25481	+	AJ430383 NM_130901	353684	-	BC035668 AK308630 TSC_hg19_v1_chr15_-_32162877	568972	-	NM_001243538|LOC283710|283710|uncharacterized LOC283710##GQ502181|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135791|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252020|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF071787|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC033627|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC005892|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC017849|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##HM135790|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC058286|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##BC070356|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252024|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_001252030|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##NM_002420|TRPM1|4308|transient receptor potential cation channel, subfamily M, member 1##AF132599|KLF13|51621|Kruppel-like factor 13##BC035503|KLF13|51621|Kruppel-like factor 13##NM_015995|KLF13|51621|Kruppel-like factor 13##BC010438|KLF13|51621|Kruppel-like factor 13##BC013946|KLF13|51621|Kruppel-like factor 13##BC012741|KLF13|51621|Kruppel-like factor 13##AF150628|KLF13|51621|Kruppel-like factor 13##AJ430383|OTUD7A|161725|OTU domain containing 7A##NM_130901|OTUD7A|161725|OTU domain containing 7A##BC035668|OTUD7A|161725|OTU domain containing 7A##AK308630|OTUD7A|161725|OTU domain containing 7A	0.0	0.0	
chr17	70723831	70723958	reg1011364.p1	3.956	+	AK000477 TSC_hg19_v1_chr17_-_70588944	-134951	-	TSC_hg19_v1_chr17_+_70117187 BC007951	-606654	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	-606724	+	AF331643 TSC_hg19_v1_chr17_-_71088816	364922	-	TSC_hg19_v1_chr17_-_71088824 AK313376 AK095227	364929	-	BC035631 TSC_hg19_v1_chr17_-_71088831	364937	-	AK000477|LOC100499467|100499467|uncharacterized LOC100499467##BC007951|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9##AF331643|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK313376|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##AK095227|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11##BC035631|SLC39A11|201266|solute carrier family 39 (metal ion transporter), member 11	0.992607	0.947429	CTCF.p2:-39:0.947
chr4	36324753	36324885	reg1012138.p1	3.956	+	BC157885 NM_001170700	-39176	+	AK131492 NM_001136536 AK304357 AK316523	-41573	+	AY049733 TSC_hg19_v1_chr4_-_36246137 NM_015230	-78782	-	NM_001144990	921870	+	NM_001104629 BC037906	1130756	+	AK001879 NM_018302 AK225192	1261050	+	BC157885|DTHD1|401124|death domain containing 1##NM_001170700|DTHD1|401124|death domain containing 1##AK131492|DTHD1|401124|death domain containing 1##NM_001136536|DTHD1|401124|death domain containing 1##AK304357|DTHD1|401124|death domain containing 1##AK316523|DTHD1|401124|death domain containing 1##AY049733|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_015230|ARAP2|116984|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2##NM_001144990|KIAA1239|57495|KIAA1239##NM_001104629|C4orf19|55286|chromosome 4 open reading frame 19##BC037906|C4orf19|55286|chromosome 4 open reading frame 19##AK001879|C4orf19|55286|chromosome 4 open reading frame 19##NM_018302|C4orf19|55286|chromosome 4 open reading frame 19##AK225192|C4orf19|55286|chromosome 4 open reading frame 19	0.054774	0.0	
chr6	81257575	81257682	reg1008989.p1	3.956	+	TSC_hg19_v1_chr6_+_80816397 AK289977 BC040139 M55575 AB529112 BT020063 X52446	-441191	+	TSC_hg19_v1_chr6_+_80816387 AK316545 BC034481	-441245	+	TSC_hg19_v1_chr6_+_80816367 NM_000056 NM_183050 AK304353 U50708	-441301	+	AY740520 FJ211061 CU674334 CU675631 TSC_hg19_v1_chr6_-_82461975	1204293	-	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	1204783	-	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	1699785	-	AK289977|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC040139|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##M55575|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BT020063|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##X52446|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK316545|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC034481|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_000056|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_183050|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK304353|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##U50708|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AY740520|FAM46A|55603|family with sequence similarity 46, member A##AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase	0.0	0.0	
chr10	50398446	50398626	reg1003578.p1	3.955	+	DQ884399 TSC_hg19_v1_chr10_-_50396437 BC047724 BC104438 BC104439 NM_001010863 BC037922 BC042857 AK303891	-2110	-	BC029839 BC047597 NM_001164484	-56478	-	TSC_hg19_v1_chr10_-_50323537 BC041414 AK297931 AK056299 NM_001031746 NM_144984	-75013	-	AK127811 NM_001135196 NM_199459 TSC_hg19_v1_chr10_+_50507214 AL833265	108675	+	NM_001080520	201370	-	BC028954 AK074682 BC063690 NM_170753	333714	-	DQ884399|C10orf128|170371|chromosome 10 open reading frame 128##BC047724|C10orf128|170371|chromosome 10 open reading frame 128##BC104438|C10orf128|170371|chromosome 10 open reading frame 128##BC104439|C10orf128|170371|chromosome 10 open reading frame 128##NM_001010863|C10orf128|170371|chromosome 10 open reading frame 128##BC037922|C10orf128|170371|chromosome 10 open reading frame 128##BC042857|C10orf128|170371|chromosome 10 open reading frame 128##BC029839|FAM170B|170370|family with sequence similarity 170, member B##BC047597|FAM170B|170370|family with sequence similarity 170, member B##NM_001164484|FAM170B|170370|family with sequence similarity 170, member B##BC041414|VSTM4|196740|V-set and transmembrane domain containing 4##AK297931|VSTM4|196740|V-set and transmembrane domain containing 4##AK056299|VSTM4|196740|V-set and transmembrane domain containing 4##NM_001031746|VSTM4|196740|V-set and transmembrane domain containing 4##NM_144984|VSTM4|196740|V-set and transmembrane domain containing 4##AK127811|C10orf71|118461|chromosome 10 open reading frame 71##NM_001135196|C10orf71|118461|chromosome 10 open reading frame 71##NM_199459|C10orf71|118461|chromosome 10 open reading frame 71##AL833265|C10orf71|118461|chromosome 10 open reading frame 71##NM_001080520|DRGX|644168|dorsal root ganglia homeobox##BC028954|PGBD3|267004|piggyBac transposable element derived 3##AK074682|PGBD3|267004|piggyBac transposable element derived 3##BC063690|PGBD3|267004|piggyBac transposable element derived 3##NM_170753|PGBD3|267004|piggyBac transposable element derived 3	0.0	0.0	
chr1	112158465	112158602	reg1015976.p1	3.955	+	BC041707 BC064411 NM_001081976	-51954	-	NM_000677 NM_020683	-111791	-	TSC_hg19_v1_chr1_+_112016601 BC017973 NM_174896	-141935	+	TSC_hg19_v1_chr1_+_112162449 NM_001010935 NM_002884 BC014086	3934	+	AB528568 CU689180 AL137198 AK295012 BC031558 TSC_hg19_v1_chr1_-_112282012 AK055667 NM_019099	123422	-	TSC_hg19_v1_chr1_+_112298189 NM_007204 BC034953 AF171063	139686	+	BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##BC017973|C1orf162|128346|chromosome 1 open reading frame 162##NM_174896|C1orf162|128346|chromosome 1 open reading frame 162##NM_001010935|RAP1A|5906|RAP1A, member of RAS oncogene family##NM_002884|RAP1A|5906|RAP1A, member of RAS oncogene family##BC014086|RAP1A|5906|RAP1A, member of RAS oncogene family##AL137198|FAM212B|55924|family with sequence similarity 212, member B##AK295012|FAM212B|55924|family with sequence similarity 212, member B##BC031558|FAM212B|55924|family with sequence similarity 212, member B##AK055667|FAM212B|55924|family with sequence similarity 212, member B##NM_019099|FAM212B|55924|family with sequence similarity 212, member B##NM_007204|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##BC034953|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20##AF171063|DDX20|11218|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	0.996888	0.0	
chr1	172712040	172712220	reg1000329.p2	3.955	+	D38122 AK314874 NM_000639 X89102 BC017502 U08137 AF288573 U11821 AB528416 DQ893466 DQ896147 CU675998 AY225406 AY858799	-83881	+	TSC_hg19_v1_chr1_+_172502291 NM_016227 AK302509 AL035291 BC137125 BC144487	-209749	+	TSC_hg19_v1_chr1_+_172502152 AK302949 AJ250075 NM_014283	-209988	+	AF117713 AF125303 BC069111 BC069319 CU686747 AY358868 AK313273 BC093986 BC112032 NM_005092	307926	-	AK297932 TSC_hg19_v1_chr1_-_173174619 BC041663	462523	-	CR542033 D90224 X79929 NM_003326	464262	-	D38122|FASLG|356|Fas ligand (TNF superfamily, member 6)##AK314874|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_000639|FASLG|356|Fas ligand (TNF superfamily, member 6)##X89102|FASLG|356|Fas ligand (TNF superfamily, member 6)##BC017502|FASLG|356|Fas ligand (TNF superfamily, member 6)##U08137|FASLG|356|Fas ligand (TNF superfamily, member 6)##AF288573|FASLG|356|Fas ligand (TNF superfamily, member 6)##U11821|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ893466|FASLG|356|Fas ligand (TNF superfamily, member 6)##DQ896147|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY225406|FASLG|356|Fas ligand (TNF superfamily, member 6)##AY858799|FASLG|356|Fas ligand (TNF superfamily, member 6)##NM_016227|C1orf9|51430|chromosome 1 open reading frame 9##AK302509|C1orf9|51430|chromosome 1 open reading frame 9##AL035291|C1orf9|51430|chromosome 1 open reading frame 9##BC137125|C1orf9|51430|chromosome 1 open reading frame 9##BC144487|C1orf9|51430|chromosome 1 open reading frame 9##AK302949|C1orf9|51430|chromosome 1 open reading frame 9##AJ250075|C1orf9|51430|chromosome 1 open reading frame 9##NM_014283|C1orf9|51430|chromosome 1 open reading frame 9##AF117713|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AF125303|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069111|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC069319|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AY358868|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK313273|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC093986|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##BC112032|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##NM_005092|TNFSF18|8995|tumor necrosis factor (ligand) superfamily, member 18##AK297932|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##BC041663|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##CR542033|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##D90224|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##X79929|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4##NM_003326|TNFSF4|7292|tumor necrosis factor (ligand) superfamily, member 4	0.0	0.0	
chr13	25305116	25305240	reg1013750.p2	3.955	+	AK292968 NM_001185085 NM_001676	-50630	+	TSC_hg19_v1_chr13_-_25086917 BC017815 AF057160 AK304399 AF158255 NM_006437	-218267	-	BC040438 NM_178540 AY358145	-421461	+	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	33141	+	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	191791	-	TSC_hg19_v1_chr13_-_25497054 NM_018451	191891	-	AK292968|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001185085|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001676|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##BC017815|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF057160|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AK304399|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF158255|PARP4|143|poly (ADP-ribose) polymerase family, member 4##NM_006437|PARP4|143|poly (ADP-ribose) polymerase family, member 4##BC040438|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##NM_178540|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##AY358145|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J##NM_018451|CENPJ|55835|centromere protein J	0.0	0.0	
chr13	67234215	67234395	reg1003359.p1	3.955	+	AK289924 NM_022843	-5244651	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-5245052	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-6262826	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	570199	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	3448236	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	5205954	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.0	0.0	
chr16	48387868	48387941	reg1004954.p2	3.955	+	AK074775 AK127125 TSC_hg19_v1_chr16_+_48278216 BC093910 BC093912 BC143246 AK027544 AK294779	-109634	+	TSC_hg19_v1_chr16_+_48278210 AJ548761 NM_031490	-109710	+	AF367202 AF411579 NM_032583 NM_145186	-118817	-	BC042550 TSC_hg19_v1_chr16_-_48399765	11856	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	11887	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	31348	-	AK074775|LONP2|83752|lon peptidase 2, peroxisomal##AK127125|LONP2|83752|lon peptidase 2, peroxisomal##BC093910|LONP2|83752|lon peptidase 2, peroxisomal##BC093912|LONP2|83752|lon peptidase 2, peroxisomal##BC143246|LONP2|83752|lon peptidase 2, peroxisomal##AK027544|LONP2|83752|lon peptidase 2, peroxisomal##AK294779|LONP2|83752|lon peptidase 2, peroxisomal##AJ548761|LONP2|83752|lon peptidase 2, peroxisomal##NM_031490|LONP2|83752|lon peptidase 2, peroxisomal##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)	1.252242	0.0	denovo_WM_7:9:0.775	denovo_WM_7:79:0.205
chr19	10682940	10683052	reg1000407.p1	3.955	+	TSC_hg19_v1_chr19_-_10679653 NM_001800 BC001822 NM_079421	-3358	-	CR542158 CU674892 U20498 DQ892872 DQ892951 DQ896120 AB464505 U49399 U40343 TSC_hg19_v1_chr19_-_10679530	-3567	-	TSC_hg19_v1_chr19_-_10676697 AK093879 AX748348 NM_023008 AK300850	-6299	-	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	14952	-	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	30137	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	53223	+	NM_001800|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##BC001822|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##NM_079421|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##CR542158|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U20498|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892872|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ892951|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##DQ896120|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U49399|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##U40343|CDKN2D|1032|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)##AK093879|KRI1|65095|KRI1 homolog (S. cerevisiae)##NM_023008|KRI1|65095|KRI1 homolog (S. cerevisiae)##AK300850|KRI1|65095|KRI1 homolog (S. cerevisiae)##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2	0.019522	0.0	
chr20	49234133	49234212	reg1018427.p2	3.955	+	BC018164 TSC_hg19_v1_chr20_+_49126947 M31724 M33689 AB385151 BT006752	-107167	+	TSC_hg19_v1_chr20_+_49126921 BC015660	-107240	+	AK299830 TSC_hg19_v1_chr20_+_49126919	-107253	+	AK056792 NM_080829	19253	-	TSC_hg19_v1_chr20_-_49308074 AK124347	73905	-	TSC_hg19_v1_chr20_+_49348057 BC060847 NM_032521	113897	+	BC018164|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M31724|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##M33689|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BT006752|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##BC015660|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK299830|PTPN1|5770|protein tyrosine phosphatase, non-receptor type 1##AK056792|FAM65C|140876|family with sequence similarity 65, member C##NM_080829|FAM65C|140876|family with sequence similarity 65, member C##BC060847|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)##NM_032521|PARD6B|84612|par-6 partitioning defective 6 homolog beta (C. elegans)	0.998675	0.0	
chr2	2930878	2930981	reg1017724.p2	3.955	+	TSC_hg19_v1_chr2_-_2335085 AK307797	-595845	-	BC137272 BC137273 AF036943 TSC_hg19_v1_chr2_-_2335017 AB029029 BC150281 NM_015025	-595964	-	BC031690 TSC_hg19_v1_chr2_-_1946938	-984023	-	DQ892693 DQ895936 CU677984 BC002485 TSC_hg19_v1_chr2_-_3381590 AK222652 AK026522 AF019952 NM_003310	450627	-	TSC_hg19_v1_chr2_+_3383492 AK094181 AK098327 NM_016030 BC014164	452576	+	AB463391 CU674724 AF087863 AB158319 BC001467 TSC_hg19_v1_chr2_-_3523303 AK222467 AK225278 AB073609 AK001775	592369	-	AK307797|MYT1L|23040|myelin transcription factor 1-like##BC137272|MYT1L|23040|myelin transcription factor 1-like##BC137273|MYT1L|23040|myelin transcription factor 1-like##AF036943|MYT1L|23040|myelin transcription factor 1-like##AB029029|MYT1L|23040|myelin transcription factor 1-like##BC150281|MYT1L|23040|myelin transcription factor 1-like##NM_015025|MYT1L|23040|myelin transcription factor 1-like##BC031690|MYT1L|23040|myelin transcription factor 1-like##DQ892693|TSSC1|7260|tumor suppressing subtransferable candidate 1##DQ895936|TSSC1|7260|tumor suppressing subtransferable candidate 1##BC002485|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK222652|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK026522|TSSC1|7260|tumor suppressing subtransferable candidate 1##AF019952|TSSC1|7260|tumor suppressing subtransferable candidate 1##NM_003310|TSSC1|7260|tumor suppressing subtransferable candidate 1##AK094181|TTC15|51112|tetratricopeptide repeat domain 15##AK098327|TTC15|51112|tetratricopeptide repeat domain 15##NM_016030|TTC15|51112|tetratricopeptide repeat domain 15##BC014164|TTC15|51112|tetratricopeptide repeat domain 15##AF087863|ADI1|55256|acireductone dioxygenase 1##AB158319|ADI1|55256|acireductone dioxygenase 1##BC001467|ADI1|55256|acireductone dioxygenase 1##AK222467|ADI1|55256|acireductone dioxygenase 1##AK225278|ADI1|55256|acireductone dioxygenase 1##AB073609|ADI1|55256|acireductone dioxygenase 1##AK001775|ADI1|55256|acireductone dioxygenase 1	0.0	0.0	
chr6	133109953	133110065	reg1015536.p1	3.955	+	AK292125 NM_078488 TSC_hg19_v1_chr6_-_133084603	-25414	-	BC064641 AB435062 AB435063 AB435064 AB435065 NM_001242350 HQ258282 HQ258449 AB026705 AJ132100 D89974 NM_004665 AK290908 AK298719 BC126145 BC126147 BC144064	-31008	-	U39664 BC096268 AJ132099 BC096265 BC096266 BC096267 TSC_hg19_v1_chr6_-_133035195 AK290425 AK314265 NM_004666	-74821	-	AK124442 BC069570 AK293853 TSC_hg19_v1_chr6_-_133119740 NM_052831 AK289918	9692	-	TSC_hg19_v1_chr6_+_133135707 AK096147 NM_001016 D28378 X53505	25698	+	TSC_hg19_v1_chr6_+_133135710 AK311826 BC095424 BC017321 BC071930	25710	+	AK292125|VNN2|8875|vanin 2##NM_078488|VNN2|8875|vanin 2##BC064641|VNN2|8875|vanin 2##AB435062|VNN2|8875|vanin 2##AB435063|VNN2|8875|vanin 2##AB435064|VNN2|8875|vanin 2##AB435065|VNN2|8875|vanin 2##NM_001242350|VNN2|8875|vanin 2##HQ258282|VNN2|8875|vanin 2##HQ258449|VNN2|8875|vanin 2##AB026705|VNN2|8875|vanin 2##AJ132100|VNN2|8875|vanin 2##D89974|VNN2|8875|vanin 2##NM_004665|VNN2|8875|vanin 2##AK290908|VNN2|8875|vanin 2##AK298719|VNN2|8875|vanin 2##BC126145|VNN2|8875|vanin 2##BC126147|VNN2|8875|vanin 2##BC144064|VNN2|8875|vanin 2##U39664|VNN1|8876|vanin 1##BC096268|VNN1|8876|vanin 1##AJ132099|VNN1|8876|vanin 1##BC096265|VNN1|8876|vanin 1##BC096266|VNN1|8876|vanin 1##BC096267|VNN1|8876|vanin 1##AK290425|VNN1|8876|vanin 1##AK314265|VNN1|8876|vanin 1##NM_004666|VNN1|8876|vanin 1##AK124442|C6orf192|116843|chromosome 6 open reading frame 192##BC069570|C6orf192|116843|chromosome 6 open reading frame 192##AK293853|C6orf192|116843|chromosome 6 open reading frame 192##NM_052831|C6orf192|116843|chromosome 6 open reading frame 192##AK289918|C6orf192|116843|chromosome 6 open reading frame 192##AK096147|SNORA33|594839|small nucleolar RNA, H/ACA box 33##NM_001016|RPS12|6206|ribosomal protein S12##D28378|RPS12|6206|ribosomal protein S12##X53505|RPS12|6206|ribosomal protein S12##AK311826|RPS12|6206|ribosomal protein S12##BC095424|RPS12|6206|ribosomal protein S12##BC017321|RPS12|6206|ribosomal protein S12##BC071930|RPS12|6206|ribosomal protein S12	2.07906	0.0	denovo_WM_7:-31:0.311	denovo_WM_7:-32:0.311	denovo_WM_7:-33:0.311	denovo_WM_7:63:0.456	denovo_WM_7:64:0.455
chr7	122087640	122087725	reg1003886.p2	3.955	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-143093	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-303393	-	TSC_hg19_v1_chr7_+_121513214 U88967	-574461	+	BC022038 AF447589 NM_139175 AK098524	251515	-	AK058116 AK098654 BC029264 NM_198085	255310	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	438816	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	1.686336	0.0	denovo_WM_7:-61:0.533
chr9	92015971	92016067	reg1017551.p1	3.955	+	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	-82601	+	TSC_hg19_v1_chr9_+_91926112 NM_001827 X54942 BC006458 AB527990 BT006630 CR407630 CR542118	-89861	+	BC026314 NM_016848 TSC_hg19_v1_chr9_-_91793734	-222309	-	BC054500 NM_001142287 NM_006378	78591	-	BX648216 TSC_hg19_v1_chr9_-_92113005	96988	-	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	203962	+	AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##NM_001827|CKS2|1164|CDC28 protein kinase regulatory subunit 2##X54942|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BC006458|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BT006630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR407630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR542118|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BC026314|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##NM_016848|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma	0.846175	0.0	denovo_WM_7:-38:0.297	denovo_WM_7:-39:0.459
chr10	31672841	31672955	reg1014448.p2	3.954	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-62809	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-64765	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-64941	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	544826	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	544887	-	TSC_hg19_v1_chr10_-_32344938 AB462413	672034	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.998402	0.0	
chr12	24281220	24281313	reg1019883.p1	3.954	+	BC014929 TSC_hg19_v1_chr12_-_24103967 AK303970	-177305	-	TSC_hg19_v1_chr12_-_24103855 AK299607 AK096569	-177412	-	AK074317 TSC_hg19_v1_chr12_-_24102605 BC065532 AB081589 NM_006940	-178664	-	TSC_hg19_v1_chr12_-_24715349 AB081588 NM_152989 BC060773	434099	-	BC104436 BC104437 TSC_hg19_v1_chr12_-_24737100 AK057456	455827	-	TSC_hg19_v1_chr12_-_25055230 CR749308 BC033864 NM_001178094	774008	-	BC014929|SOX5|6660|SRY (sex determining region Y)-box 5##AK303970|SOX5|6660|SRY (sex determining region Y)-box 5##AK299607|SOX5|6660|SRY (sex determining region Y)-box 5##AK096569|SOX5|6660|SRY (sex determining region Y)-box 5##AK074317|SOX5|6660|SRY (sex determining region Y)-box 5##BC065532|SOX5|6660|SRY (sex determining region Y)-box 5##AB081589|SOX5|6660|SRY (sex determining region Y)-box 5##NM_006940|SOX5|6660|SRY (sex determining region Y)-box 5##AB081588|SOX5|6660|SRY (sex determining region Y)-box 5##NM_152989|SOX5|6660|SRY (sex determining region Y)-box 5##BC060773|SOX5|6660|SRY (sex determining region Y)-box 5##BC104436|LINC00477|144360|long intergenic non-protein coding RNA 477##BC104437|LINC00477|144360|long intergenic non-protein coding RNA 477##AK057456|LINC00477|144360|long intergenic non-protein coding RNA 477##CR749308|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##BC033864|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic##NM_001178094|BCAT1|586|branched chain amino-acid transaminase 1, cytosolic	0.0	0.0	
chr13	21754654	21754834	reg1000233.p1	3.954	+	TSC_hg19_v1_chr13_+_21750834 BC068492 BC023616 BC000002	-3944	+	CU690596 TSC_hg19_v1_chr13_-_21750699 AF361358 AK090584 AK314864 AX746521 BC013418 AK307976 BC048988 NM_001166017 NM_145061	-4056	-	NM_024026	-4373	+	TSC_hg19_v1_chr13_+_21872311 AK093279	117539	+	CU686599 TSC_hg19_v1_chr13_-_22033417 BC110517 AK295804 BC050367 AK299354	278646	-	TSC_hg19_v1_chr13_-_22033486 AX721051	278738	-	BC068492|MRP63|78988|mitochondrial ribosomal protein 63##BC023616|MRP63|78988|mitochondrial ribosomal protein 63##BC000002|MRP63|78988|mitochondrial ribosomal protein 63##AF361358|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK090584|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK314864|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC013418|SKA3|221150|spindle and kinetochore associated complex subunit 3##AK307976|SKA3|221150|spindle and kinetochore associated complex subunit 3##BC048988|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_001166017|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_145061|SKA3|221150|spindle and kinetochore associated complex subunit 3##NM_024026|MRP63|78988|mitochondrial ribosomal protein 63##AK093279|MIPEPP3|650794|mitochondrial intermediate peptidase pseudogene 3##BC110517|ZDHHC20|253832|zinc finger, DHHC-type containing 20##AK295804|ZDHHC20|253832|zinc finger, DHHC-type containing 20##BC050367|ZDHHC20|253832|zinc finger, DHHC-type containing 20##AK299354|ZDHHC20|253832|zinc finger, DHHC-type containing 20	1.664009	0.0	denovo_WM_7:53:0.665
chr16	30154553	30154650	reg1015518.p2	3.954	+	TSC_hg19_v1_chr16_-_30134584 NM_001040056 NM_001109891 NM_002746	-19984	-	AB385073 AY033607 AY033608 DQ399291 DQ893440 DQ896778 TSC_hg19_v1_chr16_-_30134542 BC013992 AK307995	-20062	-	TSC_hg19_v1_chr16_-_30134504 BX537897 AK091009 Z11696 M84490	-20207	-	NM_001193333 NM_007074 TSC_hg19_v1_chr16_+_30194922 BC110374	40225	+	AF495470 AK096332 TSC_hg19_v1_chr16_+_30194929 AK296207 AK314714 D44497 X89109 U34690 BC126385 BC126387	40374	+	NM_001014999 NM_001015000 NM_024044 NM_178044 BC015990 BC071688 BC000754 BC019306 AK027092 AK225436 BC130545 BC130547 BC144462 BC069007	50592	+	NM_001040056|MAPK3|5595|mitogen-activated protein kinase 3##NM_001109891|MAPK3|5595|mitogen-activated protein kinase 3##NM_002746|MAPK3|5595|mitogen-activated protein kinase 3##AY033607|MAPK3|5595|mitogen-activated protein kinase 3##AY033608|MAPK3|5595|mitogen-activated protein kinase 3##DQ399291|MAPK3|5595|mitogen-activated protein kinase 3##DQ893440|MAPK3|5595|mitogen-activated protein kinase 3##DQ896778|MAPK3|5595|mitogen-activated protein kinase 3##BC013992|MAPK3|5595|mitogen-activated protein kinase 3##AK307995|MAPK3|5595|mitogen-activated protein kinase 3##BX537897|MAPK3|5595|mitogen-activated protein kinase 3##AK091009|MAPK3|5595|mitogen-activated protein kinase 3##Z11696|MAPK3|5595|mitogen-activated protein kinase 3##M84490|MAPK3|5595|mitogen-activated protein kinase 3##NM_001193333|CORO1A|11151|coronin, actin binding protein, 1A##NM_007074|CORO1A|11151|coronin, actin binding protein, 1A##BC110374|CORO1A|11151|coronin, actin binding protein, 1A##AF495470|CORO1A|11151|coronin, actin binding protein, 1A##AK096332|CORO1A|11151|coronin, actin binding protein, 1A##AK296207|CORO1A|11151|coronin, actin binding protein, 1A##AK314714|CORO1A|11151|coronin, actin binding protein, 1A##D44497|CORO1A|11151|coronin, actin binding protein, 1A##X89109|CORO1A|11151|coronin, actin binding protein, 1A##U34690|CORO1A|11151|coronin, actin binding protein, 1A##BC126385|CORO1A|11151|coronin, actin binding protein, 1A##BC126387|CORO1A|11151|coronin, actin binding protein, 1A##NM_001014999|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_001015000|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##NM_024044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##NM_178044|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC015990|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC071688|SLX1A-SULT1A3|100526830|SLX1A-SULT1A3 readthrough##BC000754|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC019306|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK027092|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##AK225436|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130545|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC130547|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)##BC144462|SLX1A|548593|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)##BC069007|SLX1B|79008|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	0.865498	0.0	denovo_WM_7:-54:0.640
chr18	51737112	51737190	reg1009881.p2	3.954	+	TSC_hg19_v1_chr18_-_51690988 AL110266	-46159	-	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	-1870038	+	NM_005215 TSC_hg19_v1_chr18_+_49866541	-1870610	+	AF072246 TSC_hg19_v1_chr18_-_51750614	13386	-	TSC_hg19_v1_chr18_-_51750997 BC032638	13814	-	TSC_hg19_v1_chr18_-_51751035 AF072242 NM_003927 NM_015832	13926	-	AL110266|MBD2|8932|methyl-CpG binding domain protein 2##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##NM_005215|DCC|1630|deleted in colorectal carcinoma##AF072246|MBD2|8932|methyl-CpG binding domain protein 2##BC032638|MBD2|8932|methyl-CpG binding domain protein 2##AF072242|MBD2|8932|methyl-CpG binding domain protein 2##NM_003927|MBD2|8932|methyl-CpG binding domain protein 2##NM_015832|MBD2|8932|methyl-CpG binding domain protein 2	0.990088	0.0	denovo_WM_7:92:0.876
chr2	24299212	24299327	reg1012633.p2	3.954	+	AB527769 AF401310 TSC_hg19_v1_chr2_-_24299197 AF147425 AF161523 AK000621 AK311118 AK311908	-98	-	BC002614 TSC_hg19_v1_chr2_+_24272636 D38037 S69800 S69815 L37086 AF322070	-26617	+	NM_004116 NM_054033 BC050998 TSC_hg19_v1_chr2_+_24272612	-26670	+	AF151868 AF184213 BC015463 NM_016047 TSC_hg19_v1_chr2_-_24299327	52	-	TSC_hg19_v1_chr2_+_24299447 BC039372	202	+	TSC_hg19_v1_chr2_+_24299729 AK092423	439	+	AF401310|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AF161523|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AK000621|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AK311118|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AK311908|SF3B14|51639|splicing factor 3B, 14 kDa subunit##BC002614|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##D38037|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##S69800|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##S69815|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##L37086|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##AF322070|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##NM_004116|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##NM_054033|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##BC050998|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##AF151868|SF3B14|51639|splicing factor 3B, 14 kDa subunit##AF184213|SF3B14|51639|splicing factor 3B, 14 kDa subunit##BC015463|SF3B14|51639|splicing factor 3B, 14 kDa subunit##NM_016047|SF3B14|51639|splicing factor 3B, 14 kDa subunit	0.0	0.0	
chr4	17578488	17578628	reg1015191.p1	3.954	+	BC127863 NM_001079827	-61771	+	AB528218 AM393718 DQ891926 DQ895113 CU674280 TSC_hg19_v1_chr4_-_17513714 X04882 BC000576 AK124382 AK296622 AK223437 AK289773 NM_000320	-64792	-	AF052389 TSC_hg19_v1_chr4_-_16900372 NM_001130834 NM_001290	-678173	-	TSC_hg19_v1_chr4_+_17578852 NM_015907	324	+	TSC_hg19_v1_chr4_+_17579057 BC065564 CR457128 AK022055	518	+	TSC_hg19_v1_chr4_+_17579121 AK298613 AK307723 AK225511 BC006199 AK298790	572	+	BC127863|CLRN2|645104|clarin 2##NM_001079827|CLRN2|645104|clarin 2##AM393718|QDPR|5860|quinoid dihydropteridine reductase##DQ891926|QDPR|5860|quinoid dihydropteridine reductase##DQ895113|QDPR|5860|quinoid dihydropteridine reductase##X04882|QDPR|5860|quinoid dihydropteridine reductase##BC000576|QDPR|5860|quinoid dihydropteridine reductase##AK124382|QDPR|5860|quinoid dihydropteridine reductase##AK296622|QDPR|5860|quinoid dihydropteridine reductase##AK223437|QDPR|5860|quinoid dihydropteridine reductase##AK289773|QDPR|5860|quinoid dihydropteridine reductase##NM_000320|QDPR|5860|quinoid dihydropteridine reductase##AF052389|LDB2|9079|LIM domain binding 2##NM_001130834|LDB2|9079|LIM domain binding 2##NM_001290|LDB2|9079|LIM domain binding 2##NM_015907|LAP3|51056|leucine aminopeptidase 3##BC065564|LAP3|51056|leucine aminopeptidase 3##CR457128|LAP3|51056|leucine aminopeptidase 3##AK022055|LAP3|51056|leucine aminopeptidase 3##AK298613|LAP3|51056|leucine aminopeptidase 3##AK307723|LAP3|51056|leucine aminopeptidase 3##AK225511|LAP3|51056|leucine aminopeptidase 3##BC006199|LAP3|51056|leucine aminopeptidase 3##AK298790|LAP3|51056|leucine aminopeptidase 3	0.0	0.0	
chr5	157837983	157838123	reg1014979.p2	3.954	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-551963	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-653673	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-667313	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	688404	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	688689	-	AK304228 NM_001199382	796595	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	0.993686	0.0	denovo_WM_7:-93:0.930
chr6	81255055	81255159	reg1017622.p1	3.954	+	TSC_hg19_v1_chr6_+_80816397 AK289977 BC040139 M55575 AB529112 BT020063 X52446	-438670	+	TSC_hg19_v1_chr6_+_80816387 AK316545 BC034481	-438724	+	TSC_hg19_v1_chr6_+_80816367 NM_000056 NM_183050 AK304353 U50708	-438780	+	AY740520 FJ211061 CU674334 CU675631 TSC_hg19_v1_chr6_-_82461975	1206814	-	TSC_hg19_v1_chr6_-_82462399 AJ420592 BC000683 AK000044 BX648876 AF350451 BC007351 AK056057 AK292109 NM_017633	1207304	-	BC112929 TSC_hg19_v1_chr6_-_82957431 BC012551	1702306	-	AK289977|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC040139|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##M55575|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BT020063|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##X52446|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK316545|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##BC034481|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_000056|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##NM_183050|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AK304353|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##U50708|BCKDHB|594|branched chain keto acid dehydrogenase E1, beta polypeptide##AY740520|FAM46A|55603|family with sequence similarity 46, member A##AJ420592|FAM46A|55603|family with sequence similarity 46, member A##BC000683|FAM46A|55603|family with sequence similarity 46, member A##AK000044|FAM46A|55603|family with sequence similarity 46, member A##BX648876|FAM46A|55603|family with sequence similarity 46, member A##AF350451|FAM46A|55603|family with sequence similarity 46, member A##BC007351|FAM46A|55603|family with sequence similarity 46, member A##AK056057|FAM46A|55603|family with sequence similarity 46, member A##AK292109|FAM46A|55603|family with sequence similarity 46, member A##NM_017633|FAM46A|55603|family with sequence similarity 46, member A##BC112929|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase##BC012551|IBTK|25998|inhibitor of Bruton agammaglobulinemia tyrosine kinase	0.0	0.0	
chr7	12297677	12297767	reg1015961.p1	3.954	+	TSC_hg19_v1_chr7_+_12250952 NM_001134232 NM_018374 AK311651 AK002135 BC033901 BC028108 BC039741 AK223263	-46797	+	TSC_hg19_v1_chr7_-_11871825 AK092252 AX747433 NM_015204	-425933	-	TSC_hg19_v1_chr7_+_11013534 AK294419 NM_014660 AK295461 AB018326 BC152414	-1284212	+	TSC_hg19_v1_chr7_-_12443512 AK075525 BC144316 BC144319	145810	-	NM_001135924	146129	-	AB067492 NM_001112706 AK290363 AK075123 TSC_hg19_v1_chr7_+_12610346 BC021090 AB590413 DQ892033 DQ895224 AF276507	312585	+	NM_001134232|TMEM106B|54664|transmembrane protein 106B##NM_018374|TMEM106B|54664|transmembrane protein 106B##AK311651|TMEM106B|54664|transmembrane protein 106B##AK002135|TMEM106B|54664|transmembrane protein 106B##BC033901|TMEM106B|54664|transmembrane protein 106B##BC028108|TMEM106B|54664|transmembrane protein 106B##BC039741|TMEM106B|54664|transmembrane protein 106B##AK223263|TMEM106B|54664|transmembrane protein 106B##AK092252|THSD7A|221981|thrombospondin, type I, domain containing 7A##NM_015204|THSD7A|221981|thrombospondin, type I, domain containing 7A##AK294419|PHF14|9678|PHD finger protein 14##NM_014660|PHF14|9678|PHD finger protein 14##AK295461|PHF14|9678|PHD finger protein 14##AB018326|PHF14|9678|PHD finger protein 14##BC152414|PHF14|9678|PHD finger protein 14##AK075525|VWDE|221806|von Willebrand factor D and EGF domains##BC144316|VWDE|221806|von Willebrand factor D and EGF domains##BC144319|VWDE|221806|von Willebrand factor D and EGF domains##NM_001135924|VWDE|221806|von Willebrand factor D and EGF domains##AB067492|SCIN|85477|scinderin##NM_001112706|SCIN|85477|scinderin##AK290363|SCIN|85477|scinderin##AK075123|SCIN|85477|scinderin##BC021090|SCIN|85477|scinderin##DQ892033|SCIN|85477|scinderin##DQ895224|SCIN|85477|scinderin##AF276507|SCIN|85477|scinderin	1.974464	0.0	denovo_WM_7:43:0.491	denovo_WM_7:44:0.491	denovo_WM_7:60:0.245	denovo_WM_7:61:0.247	denovo_WM_7:62:0.250	denovo_WM_7:63:0.250
chr12	131055567	131055677	reg1001945.p1	3.953	+	AB002316 NM_015347	-53213	-	TSC_hg19_v1_chr12_+_130822635 BC028581 AF387507 AF104260 AK093133 AX747944	-233000	+	NM_001190971 NM_004764	-233190	+	TSC_hg19_v1_chr12_-_131200818 BC007632	145203	-	TSC_hg19_v1_chr12_-_131323796 D14582 BC047496 NM_001980 NM_194356	268131	-	TSC_hg19_v1_chr12_+_131356615 AF054183 AK311223 AK316193 AK312466 BC000852 NM_006325	300964	+	AB002316|RIMBP2|23504|RIMS binding protein 2##NM_015347|RIMBP2|23504|RIMS binding protein 2##BC028581|PIWIL1|9271|piwi-like 1 (Drosophila)##AF387507|PIWIL1|9271|piwi-like 1 (Drosophila)##AF104260|PIWIL1|9271|piwi-like 1 (Drosophila)##AK093133|PIWIL1|9271|piwi-like 1 (Drosophila)##NM_001190971|PIWIL1|9271|piwi-like 1 (Drosophila)##NM_004764|PIWIL1|9271|piwi-like 1 (Drosophila)##BC007632|RIMBP2|23504|RIMS binding protein 2##D14582|STX2|2054|syntaxin 2##BC047496|STX2|2054|syntaxin 2##NM_001980|STX2|2054|syntaxin 2##NM_194356|STX2|2054|syntaxin 2##AF054183|RAN|5901|RAN, member RAS oncogene family##AK316193|RAN|5901|RAN, member RAS oncogene family##AK312466|RAN|5901|RAN, member RAS oncogene family##BC000852|RAN|5901|RAN, member RAS oncogene family##NM_006325|RAN|5901|RAN, member RAS oncogene family	0.0	0.0	
chr1	27883054	27883157	reg1016508.p1	3.953	+	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	-66429	-	TSC_hg19_v1_chr1_-_27816670 BC012329	-66434	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	-66505	-	BC042058 NM_001029882	47016	-	BC064935 TSC_hg19_v1_chr1_-_27930394	47272	-	AK125143 TSC_hg19_v1_chr1_-_27952648 NM_001042747	69565	-	NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##NM_001029882|AHDC1|27245|AT hook, DNA binding motif, containing 1##BC064935|AHDC1|27245|AT hook, DNA binding motif, containing 1##AK125143|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog##NM_001042747|FGR|2268|Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog	0.0	0.0	
chr22	35791185	35791322	reg1010562.p2	3.953	+	AF051791 TSC_hg19_v1_chr22_+_35779219	-12091	+	TSC_hg19_v1_chr22_+_35777088 AK313120 BC001491 M23041 AB528477 BT019785 CR541945 CR541968 CU013103 CU013391 DQ892310 DQ895510 JF323038	-14127	+	CR456505 NM_002133 TSC_hg19_v1_chr22_+_35777085 X06985	-14185	+	TSC_hg19_v1_chr22_+_35796134 NM_006739 AK223323 AK301121 D83986 AK130620 AK291136 AK298624 AK122853 AK312533	4872	+	TSC_hg19_v1_chr22_+_35796157 BC000142 AK308343 CR456517 X74795 BC003656	4918	+	TSC_hg19_v1_chr22_+_35796295 AB463121 CU013117 CU013405 CU674060 CU678562	5109	+	AF051791|HMOX1|3162|heme oxygenase (decycling) 1##AK313120|HMOX1|3162|heme oxygenase (decycling) 1##BC001491|HMOX1|3162|heme oxygenase (decycling) 1##M23041|HMOX1|3162|heme oxygenase (decycling) 1##BT019785|HMOX1|3162|heme oxygenase (decycling) 1##CR541945|HMOX1|3162|heme oxygenase (decycling) 1##CR541968|HMOX1|3162|heme oxygenase (decycling) 1##CU013103|HMOX1|3162|heme oxygenase (decycling) 1##CU013391|HMOX1|3162|heme oxygenase (decycling) 1##DQ892310|HMOX1|3162|heme oxygenase (decycling) 1##DQ895510|HMOX1|3162|heme oxygenase (decycling) 1##JF323038|HMOX1|3162|heme oxygenase (decycling) 1##CR456505|HMOX1|3162|heme oxygenase (decycling) 1##NM_002133|HMOX1|3162|heme oxygenase (decycling) 1##X06985|HMOX1|3162|heme oxygenase (decycling) 1##NM_006739|MCM5|4174|minichromosome maintenance complex component 5##AK223323|MCM5|4174|minichromosome maintenance complex component 5##AK301121|MCM5|4174|minichromosome maintenance complex component 5##D83986|MCM5|4174|minichromosome maintenance complex component 5##AK130620|MCM5|4174|minichromosome maintenance complex component 5##AK291136|MCM5|4174|minichromosome maintenance complex component 5##AK298624|MCM5|4174|minichromosome maintenance complex component 5##AK122853|MCM5|4174|minichromosome maintenance complex component 5##AK312533|MCM5|4174|minichromosome maintenance complex component 5##BC000142|MCM5|4174|minichromosome maintenance complex component 5##AK308343|MCM5|4174|minichromosome maintenance complex component 5##CR456517|MCM5|4174|minichromosome maintenance complex component 5##X74795|MCM5|4174|minichromosome maintenance complex component 5##BC003656|MCM5|4174|minichromosome maintenance complex component 5##CU013117|MCM5|4174|minichromosome maintenance complex component 5##CU013405|MCM5|4174|minichromosome maintenance complex component 5	1.674736	0.0	denovo_WM_7:2:0.549	denovo_WM_7:-12:0.560
chr2	33755462	33755616	reg1014134.p1	3.953	+	AB020653 NM_015376	-16598	+	TSC_hg19_v1_chr2_+_33701715 BX647990	-53843	+	NM_001139488	-54219	+	TSC_hg19_v1_chr2_-_33824353 BC136768 BC136770 BC060860 BC020907 AK300023 AK074867 NM_015475 CR936766	68806	-	TSC_hg19_v1_chr2_+_36582920 AY358371	2827423	+	AB209139 NM_016441 AF167706 BC111989 BC113371 AB384861	2827863	+	AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC136768|FAM98A|25940|family with sequence similarity 98, member A##BC136770|FAM98A|25940|family with sequence similarity 98, member A##BC060860|FAM98A|25940|family with sequence similarity 98, member A##BC020907|FAM98A|25940|family with sequence similarity 98, member A##AK300023|FAM98A|25940|family with sequence similarity 98, member A##AK074867|FAM98A|25940|family with sequence similarity 98, member A##NM_015475|FAM98A|25940|family with sequence similarity 98, member A##CR936766|FAM98A|25940|family with sequence similarity 98, member A##AY358371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AB209139|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##NM_016441|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##AF167706|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC111989|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)##BC113371|CRIM1|51232|cysteine rich transmembrane BMP regulator 1 (chordin-like)	1.021134	0.0	
chr2	96881132	96881261	reg1009745.p1	3.953	+	TSC_hg19_v1_chr2_-_96874588 NM_020151	-6598	-	AF270647 TSC_hg19_v1_chr2_-_96874561 BC012774 BC014076 BC012793 BC007894 BC009998 BC032106 BC014274 BC003028 BC008894 BC013279	-6662	-	TSC_hg19_v1_chr2_+_96874144 AK311432	-7042	+	BC101730 BC101732 NM_001037228	24780	+	TSC_hg19_v1_chr2_-_96931700 BC039892	50491	-	TSC_hg19_v1_chr2_-_96931736 AX775835 BC028575 AK000514 AK293276	50533	-	NM_020151|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AF270647|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012774|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014076|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012793|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC007894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC009998|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC032106|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014274|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC003028|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC008894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC013279|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC101730|LOC285033|285033|uncharacterized LOC285033##BC101732|LOC285033|285033|uncharacterized LOC285033##NM_001037228|LOC285033|285033|uncharacterized LOC285033##BC039892|TMEM127|55654|transmembrane protein 127##BC028575|TMEM127|55654|transmembrane protein 127##AK000514|TMEM127|55654|transmembrane protein 127##AK293276|TMEM127|55654|transmembrane protein 127	1.972977	0.0	denovo_WM_7:88:0.388	denovo_WM_7:89:0.291	denovo_WM_7:105:0.295	denovo_WM_7:106:0.392
chr12	104854525	104854646	reg1006644.p2	3.952	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-3498	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-3777	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-3814	+	TSC_hg19_v1_chr12_+_105153261 AF131762	298692	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	467678	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	525505	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.0	0.0	
chr12	106696324	106696390	reg1014649.p1	3.952	+	BC067357 BC082972 TSC_hg19_v1_chr12_-_106641928 NM_006825 X69910 BC094824 BC037578 AK223563 AK123693 BC025341	-54510	-	AB011109 BC152462 NM_014840	-162547	-	TSC_hg19_v1_chr12_-_106532646 AK289992 AK027302	-163675	-	TSC_hg19_v1_chr12_+_106696595 BC033617 NM_152772 BC017872 AF306671 AF306858 AK314055	215	+	NM_018082 TSC_hg19_v1_chr12_+_106751498 BX537447	55113	+	TSC_hg19_v1_chr12_+_106751589 BC046238 AK291635 AY092084	55220	+	BC067357|CKAP4|10970|cytoskeleton-associated protein 4##BC082972|CKAP4|10970|cytoskeleton-associated protein 4##NM_006825|CKAP4|10970|cytoskeleton-associated protein 4##X69910|CKAP4|10970|cytoskeleton-associated protein 4##BC094824|CKAP4|10970|cytoskeleton-associated protein 4##BC037578|CKAP4|10970|cytoskeleton-associated protein 4##AK223563|CKAP4|10970|cytoskeleton-associated protein 4##AK123693|CKAP4|10970|cytoskeleton-associated protein 4##BC025341|CKAP4|10970|cytoskeleton-associated protein 4##AB011109|NUAK1|9891|NUAK family, SNF1-like kinase, 1##BC152462|NUAK1|9891|NUAK family, SNF1-like kinase, 1##NM_014840|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK289992|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK027302|NUAK1|9891|NUAK family, SNF1-like kinase, 1##BC033617|TCP11L2|255394|t-complex 11 (mouse)-like 2##NM_152772|TCP11L2|255394|t-complex 11 (mouse)-like 2##BC017872|TCP11L2|255394|t-complex 11 (mouse)-like 2##AF306671|TCP11L2|255394|t-complex 11 (mouse)-like 2##AF306858|TCP11L2|255394|t-complex 11 (mouse)-like 2##AK314055|TCP11L2|255394|t-complex 11 (mouse)-like 2##NM_018082|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##BX537447|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##BC046238|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AK291635|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AY092084|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B	0.0	0.0	
chr14	55739229	55739351	reg1015532.p1	3.952	+	NM_152231	-419	+	TSC_hg19_v1_chr14_+_55738114 BX248268 BC095482	-1132	+	NM_017943 AK092879 AX747787 TSC_hg19_v1_chr14_+_55738097 BC109120 BC109121	-1231	+	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	139266	-	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	168007	-	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	307526	-	NM_152231|FBXO34|55030|F-box protein 34##BX248268|FBXO34|55030|F-box protein 34##BC095482|FBXO34|55030|F-box protein 34##NM_017943|FBXO34|55030|F-box protein 34##AK092879|FBXO34|55030|F-box protein 34##BC109120|FBXO34|55030|F-box protein 34##BC109121|FBXO34|55030|F-box protein 34##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)	1.780869	0.0	denovo_WM_7:-36:0.298	denovo_WM_7:-37:0.298	denovo_WM_7:-38:0.298	denovo_WM_7:53:0.758
chr16	30354874	30354974	reg1014473.p2	3.952	+	TSC_hg19_v1_chr16_-_30346695 AK289905 BC063703	-8225	-	AK298073 NM_001017390 NM_177552 BC132914 BC132920 BC144354 BC144355 BC171772 L25275	-144356	+	BC022832 NM_001031827 NM_001039182	-149298	-	BC013854 NM_001243646	11330	-	AK315708 TSC_hg19_v1_chr16_-_30366603 BC000495 BC001947 AF104222	11676	-	NM_006110 TSC_hg19_v1_chr16_-_30366682	11758	-	AK289905|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##BC063703|LOC595101|595101|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##AK298073|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##NM_001017390|SULT1A4|445329|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4##NM_177552|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132914|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC132920|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144354|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC144355|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC171772|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##L25275|SULT1A3|6818|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3##BC022832|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001031827|BOLA2|552900|bolA homolog 2 (E. coli)##NM_001039182|BOLA2B|654483|bolA homolog 2B (E. coli)##BC013854|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_001243646|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AK315708|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC000495|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##BC001947|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##AF104222|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2##NM_006110|CD2BP2|10421|CD2 (cytoplasmic tail) binding protein 2	2.687348	0.0	denovo_WM_7:-3:0.203	denovo_WM_7:-4:0.735	denovo_WM_7:17:0.630
chr17	3644281	3644381	reg1010189.p2	3.952	+	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	-17115	+	TSC_hg19_v1_chr17_-_3627077 AF289864	-17229	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-44739	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	60122	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	60180	-	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	105179	-	BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85	1.234284	0.0	denovo_WM_7:36:0.226	denovo_WM_7:51:0.300
chr19	41903146	41903312	reg1015643.p1	3.952	+	NM_001042595 BC063705	-20047	+	NM_001098821 NM_001098822 NM_001098823 NM_001098824	-20792	+	TSC_hg19_v1_chr19_-_41870052 BC004157 BC004444 NM_030578	-33190	-	TSC_hg19_v1_chr19_-_41903262 AB463622 BC007742 AK314941 AF281134 NM_020158 BC107696 AF285785	70	-	NM_000709 NM_001164783 TSC_hg19_v1_chr19_+_41903714	475	+	TSC_hg19_v1_chr19_+_41903722 AL833143 BC023983 Z14093	491	+	NM_001042595|TMEM91|641649|transmembrane protein 91##BC063705|TMEM91|641649|transmembrane protein 91##NM_001098821|TMEM91|641649|transmembrane protein 91##NM_001098822|TMEM91|641649|transmembrane protein 91##NM_001098823|TMEM91|641649|transmembrane protein 91##NM_001098824|TMEM91|641649|transmembrane protein 91##BC004157|B9D2|80776|B9 protein domain 2##BC004444|B9D2|80776|B9 protein domain 2##NM_030578|B9D2|80776|B9 protein domain 2##BC007742|EXOSC5|56915|exosome component 5##AK314941|EXOSC5|56915|exosome component 5##AF281134|EXOSC5|56915|exosome component 5##NM_020158|EXOSC5|56915|exosome component 5##BC107696|EXOSC5|56915|exosome component 5##AF285785|EXOSC5|56915|exosome component 5##NM_000709|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##NM_001164783|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AL833143|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC023983|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##Z14093|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide	0.0	0.0	
chr5	179720562	179720676	reg1005338.p2	3.952	+	TSC_hg19_v1_chr5_-_179719061 NM_001135044 NM_002752 NM_139068 NM_139069 NM_139070	-1543	-	TSC_hg19_v1_chr5_-_179718968 AK289638	-1652	-	TSC_hg19_v1_chr5_-_179636160 NM_175062 BC036802	-84443	-	AB016789 NM_005110 BC000012 TSC_hg19_v1_chr5_-_179780333 AK022507 AK314551	59706	-	TSC_hg19_v1_chr5_+_179921385 NM_015455	200774	+	TSC_hg19_v1_chr5_+_179921452 AB033020 BC152469	200839	+	NM_001135044|MAPK9|5601|mitogen-activated protein kinase 9##NM_002752|MAPK9|5601|mitogen-activated protein kinase 9##NM_139068|MAPK9|5601|mitogen-activated protein kinase 9##NM_139069|MAPK9|5601|mitogen-activated protein kinase 9##NM_139070|MAPK9|5601|mitogen-activated protein kinase 9##AK289638|MAPK9|5601|mitogen-activated protein kinase 9##NM_175062|RASGEF1C|255426|RasGEF domain family, member 1C##BC036802|RASGEF1C|255426|RasGEF domain family, member 1C##AB016789|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_005110|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##BC000012|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK022507|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK314551|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_015455|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##AB033020|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##BC152469|CNOT6|57472|CCR4-NOT transcription complex, subunit 6	0.0	0.4604	CTCF.p2:71:0.460
chr8	142046276	142046373	reg1010810.p2	3.952	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	-35068	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-400700	-	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-524761	+	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	92413	+	AK128212 NM_001080431	192348	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	217866	-	AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4	0.0	0.0	
chr9	136854617	136854735	reg1010378.p1	3.952	+	BC136363 BC136364 BC144035 AK223402 TSC_hg19_v1_chr9_-_136605067 AF095735 AF095737 AK298348 AK316494 NM_007101	-249690	-	TSC_hg19_v1_chr9_-_136603475 AK291211 AF047004 AF047190 AJ223317 NM_001134707	-251198	-	NM_000787 Y00096 BC017174 X13255 X13256 DQ893630 EU176683 CU677847	-353168	+	BX640754 TSC_hg19_v1_chr9_-_136857447 AB587478 S76992 BC132965 BC132967 NM_001134398 NM_003371	2770	-	D26362 TSC_hg19_v1_chr9_-_136933121 BC010699 NM_007371	78517	-	TSC_hg19_v1_chr9_-_136933665 BC032124 AK299519	78950	-	BC136363|SARDH|1757|sarcosine dehydrogenase##BC136364|SARDH|1757|sarcosine dehydrogenase##BC144035|SARDH|1757|sarcosine dehydrogenase##AK223402|SARDH|1757|sarcosine dehydrogenase##AF095735|SARDH|1757|sarcosine dehydrogenase##AF095737|SARDH|1757|sarcosine dehydrogenase##AK298348|SARDH|1757|sarcosine dehydrogenase##AK316494|SARDH|1757|sarcosine dehydrogenase##NM_007101|SARDH|1757|sarcosine dehydrogenase##AK291211|SARDH|1757|sarcosine dehydrogenase##AF047004|SARDH|1757|sarcosine dehydrogenase##AF047190|SARDH|1757|sarcosine dehydrogenase##AJ223317|SARDH|1757|sarcosine dehydrogenase##NM_001134707|SARDH|1757|sarcosine dehydrogenase##NM_000787|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##Y00096|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BC017174|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13255|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##X13256|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##DQ893630|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##EU176683|DBH|1621|dopamine beta-hydroxylase (dopamine beta-monooxygenase)##BX640754|VAV2|7410|vav 2 guanine nucleotide exchange factor##S76992|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132965|VAV2|7410|vav 2 guanine nucleotide exchange factor##BC132967|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_001134398|VAV2|7410|vav 2 guanine nucleotide exchange factor##NM_003371|VAV2|7410|vav 2 guanine nucleotide exchange factor##D26362|BRD3|8019|bromodomain containing 3##BC010699|BRD3|8019|bromodomain containing 3##NM_007371|BRD3|8019|bromodomain containing 3##BC032124|BRD3|8019|bromodomain containing 3##AK299519|BRD3|8019|bromodomain containing 3	0.999365	0.0	
chr11	94206715	94206843	reg1006546.p2	3.951	+	TSC_hg19_v1_chr11_-_94134589 AK315161 NM_016540	-72197	-	NM_001199206	-167977	+	TSC_hg19_v1_chr11_+_93862307 AY359023 FM201789	-344459	+	U37359 TSC_hg19_v1_chr11_-_94227011 BC017823 BC005241 AK095388 AF022778 AK308318 NM_005590 NM_005591	20194	-	TSC_hg19_v1_chr11_+_94227168 NM_017704 AF025354 AK000196 BC017798 AK000448 AL833977	20379	+	NM_001190462	38915	+	AK315161|GPR83|10888|G protein-coupled receptor 83##NM_016540|GPR83|10888|G protein-coupled receptor 83##NM_001199206|FOLR4|390243|folate receptor 4 (delta) homolog (mouse)##AY359023|PANX1|24145|pannexin 1##FM201789|PANX1|24145|pannexin 1##U37359|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##BC017823|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##BC005241|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AK095388|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AF022778|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##AK308318|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_005590|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_005591|MRE11A|4361|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)##NM_017704|ANKRD49|54851|ankyrin repeat domain 49##AF025354|ANKRD49|54851|ankyrin repeat domain 49##AK000196|ANKRD49|54851|ankyrin repeat domain 49##BC017798|ANKRD49|54851|ankyrin repeat domain 49##AK000448|ANKRD49|54851|ankyrin repeat domain 49##AL833977|ANKRD49|54851|ankyrin repeat domain 49##NM_001190462|LOC643037|643037|uncharacterized LOC643037	0.0	0.0	
chr15	59592713	59592882	reg1014867.p1	3.951	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	-93745	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	-195426	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-233719	+	AB290177 TSC_hg19_v1_chr15_-_59665055	72257	-	TSC_hg19_v1_chr15_-_59665065 AK291688	72269	-	BC067835 BC098392 TSC_hg19_v1_chr15_-_59665071 NM_004998 U14391	72273	-	AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AK095327|RNF111|54778|ring finger protein 111##AB290177|MYO1E|4643|myosin IE##AK291688|MYO1E|4643|myosin IE##BC098392|MYO1E|4643|myosin IE##NM_004998|MYO1E|4643|myosin IE##U14391|MYO1E|4643|myosin IE	0.0	0.0	
chr19	49972575	49972692	reg1011031.p1	3.951	+	AK297101 TSC_hg19_v1_chr19_+_49956529 BC014895 AK024182 AK301246	-16103	+	NM_001145396 NM_153329 TSC_hg19_v1_chr19_+_49956479 AK298587 AK074136	-16152	+	TSC_hg19_v1_chr19_-_49955072 AK294687 BC001108 AK000650 AK304476 NM_017916	-17564	-	NM_001204502 NM_001459 TSC_hg19_v1_chr19_+_49977483 U04806 BC006331 BC011914 BC028001 BC126293 BC136464 BC144129	4865	+	NM_001204503 U03858 AK301136 TSC_hg19_v1_chr19_+_49977846 HQ258599	5223	+	TSC_hg19_v1_chr19_+_49990861 AK130605	18223	+	AK297101|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##BC014895|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK024182|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK301246|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##NM_001145396|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##NM_153329|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK298587|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK074136|ALDH16A1|126133|aldehyde dehydrogenase 16 family, member A1##AK294687|PIH1D1|55011|PIH1 domain containing 1##BC001108|PIH1D1|55011|PIH1 domain containing 1##AK000650|PIH1D1|55011|PIH1 domain containing 1##AK304476|PIH1D1|55011|PIH1 domain containing 1##NM_017916|PIH1D1|55011|PIH1 domain containing 1##NM_001204502|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##NM_001459|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##U04806|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC006331|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC011914|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC028001|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC126293|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC136464|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##BC144129|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##NM_001204503|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##U03858|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##AK301136|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##HQ258599|FLT3LG|2323|fms-related tyrosine kinase 3 ligand##AK130605|RPL13A|23521|ribosomal protein L13a	0.0	0.0	
chr22	40614242	40614380	reg1015623.p1	3.951	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-40312	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-172879	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	-173402	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	128221	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	152278	+	TSC_hg19_v1_chr22_+_40766619 AK295469	152308	+	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3	1.966805	0.0	denovo_WM_7:2:0.819
chr5	142378198	142378339	reg1015267.p1	3.951	+	NM_001135608 NM_015071 AB463225 TSC_hg19_v1_chr5_+_142150324 CU686665	-227960	+	TSC_hg19_v1_chr5_+_142149971 BC068555	-228296	+	M60515 AK289762 TSC_hg19_v1_chr5_-_142077587 DQ655917 NM_001144934 NM_001144935	-300697	-	TSC_hg19_v1_chr5_-_142782756 AK314789 X03225 X03348	404555	-	TSC_hg19_v1_chr5_-_142783064 AK223594 AJ877170 AJ877171 AJ877172	404838	-	BC015610 TSC_hg19_v1_chr5_-_142783214	404943	-	NM_001135608|ARHGAP26|23092|Rho GTPase activating protein 26##NM_015071|ARHGAP26|23092|Rho GTPase activating protein 26##BC068555|ARHGAP26|23092|Rho GTPase activating protein 26##M60515|FGF1|2246|fibroblast growth factor 1 (acidic)##AK289762|FGF1|2246|fibroblast growth factor 1 (acidic)##DQ655917|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144934|FGF1|2246|fibroblast growth factor 1 (acidic)##NM_001144935|FGF1|2246|fibroblast growth factor 1 (acidic)##AK314789|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03225|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##X03348|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AK223594|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877170|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877171|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##AJ877172|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)##BC015610|NR3C1|2908|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	0.974432	0.0	denovo_WM_7:49:0.704
chr5	88737875	88737988	reg1013344.p1	3.951	+	AL833268 AL833274 NM_001131005 NM_001193347	-538037	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-552667	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-552811	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	967608	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1032251	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1032647	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.0	0.0	
chr9	37409752	37409860	reg1015803.p2	3.951	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-289223	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-289298	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-289320	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	12900	+	BC010007 TSC_hg19_v1_chr9_-_37465267	55454	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	55589	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	1.982857	0.096054	denovo_WM_7:56:0.946
chr1	156116060	156116160	reg1014346.p2	3.950	+	TSC_hg19_v1_chr1_+_156084585 AY528714 AB527090 EU831758 EU831836 EU832167 EU832261 CU677029 CU678414 AY847595 AY847596 AY847597	-31466	+	TSC_hg19_v1_chr1_+_156084568 M13451	-31540	+	TSC_hg19_v1_chr1_+_156084553 BC003162 AK130179	-31559	+	NM_001193301 AY358531	3661	+	NM_001193300 NM_022367 AK296693 TSC_hg19_v1_chr1_+_156123375 AK091127 AK290353 AX746794 NM_001193302 AK315547 BX640891 BC020974	7244	+	TSC_hg19_v1_chr1_+_156163725 NM_014655	47628	+	AY528714|LMNA|4000|lamin A/C##EU831758|LMNA|4000|lamin A/C##EU831836|LMNA|4000|lamin A/C##EU832167|LMNA|4000|lamin A/C##EU832261|LMNA|4000|lamin A/C##AY847595|LMNA|4000|lamin A/C##AY847596|LMNA|4000|lamin A/C##AY847597|LMNA|4000|lamin A/C##M13451|LMNA|4000|lamin A/C##BC003162|LMNA|4000|lamin A/C##AK130179|LMNA|4000|lamin A/C##NM_001193301|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AY358531|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193300|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_022367|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK296693|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK091127|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK290353|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_001193302|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##AK315547|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BX640891|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##BC020974|SEMA4A|64218|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A##NM_014655|SLC25A44|9673|solute carrier family 25, member 44	0.0	0.0	
chr12	108070288	108070468	reg1000248.p2	3.950	+	AK127295 NM_001017523	-95745	+	TSC_hg19_v1_chr12_+_107712210 BC027931 NM_001018072 BC146824	-358165	+	TSC_hg19_v1_chr12_-_107487630 NM_004075	-582768	-	TSC_hg19_v1_chr12_+_108079586 AK297961 BC010921 AK223162 BC032127 BC001652 L07758 NM_007062 BC046144 BC040135 BC000067 AK290681 DQ892735 DQ895982 DQ896014 CU674810 CU679850 AK296252	9289	+	AK056378 TSC_hg19_v1_chr12_-_108154899	84461	-	TSC_hg19_v1_chr12_-_108154913 NM_012406	84532	-	AK127295|BTBD11|121551|BTB (POZ) domain containing 11##NM_001017523|BTBD11|121551|BTB (POZ) domain containing 11##BC027931|BTBD11|121551|BTB (POZ) domain containing 11##NM_001018072|BTBD11|121551|BTB (POZ) domain containing 11##BC146824|BTBD11|121551|BTB (POZ) domain containing 11##NM_004075|CRY1|1407|cryptochrome 1 (photolyase-like)##AK297961|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC010921|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK223162|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC032127|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC001652|PWP1|11137|PWP1 homolog (S. cerevisiae)##L07758|PWP1|11137|PWP1 homolog (S. cerevisiae)##NM_007062|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC046144|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC040135|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC000067|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK290681|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ892735|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ895982|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ896014|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK296252|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK056378|PRDM4|11108|PR domain containing 4##NM_012406|PRDM4|11108|PR domain containing 4	0.0	0.0	
chr1	33282967	33283051	reg1011925.p1	3.950	+	U40714 U89436 DQ891666 DQ894853 TSC_hg19_v1_chr1_-_33282932 BC001933 BC004151 BC016689 AK026535 AK223608	-90	-	TSC_hg19_v1_chr1_+_33231274 AB040955	-51738	+	TSC_hg19_v1_chr1_+_33231234 AK298965 NM_001198972 NM_001198973	-51778	+	AK090711 AX746586 TSC_hg19_v1_chr1_+_33283180 BX647916 NM_001017406 NM_022753 BX647667	108	+	TSC_hg19_v1_chr1_+_33283215 BC015175	303	+	NM_003680 AK125213	683	-	U40714|YARS|8565|tyrosyl-tRNA synthetase##U89436|YARS|8565|tyrosyl-tRNA synthetase##DQ891666|YARS|8565|tyrosyl-tRNA synthetase##DQ894853|YARS|8565|tyrosyl-tRNA synthetase##BC001933|YARS|8565|tyrosyl-tRNA synthetase##BC004151|YARS|8565|tyrosyl-tRNA synthetase##BC016689|YARS|8565|tyrosyl-tRNA synthetase##AK026535|YARS|8565|tyrosyl-tRNA synthetase##AK223608|YARS|8565|tyrosyl-tRNA synthetase##AB040955|KIAA1522|57648|KIAA1522##AK298965|KIAA1522|57648|KIAA1522##NM_001198972|KIAA1522|57648|KIAA1522##NM_001198973|KIAA1522|57648|KIAA1522##AK090711|S100PBP|64766|S100P binding protein##BX647916|S100PBP|64766|S100P binding protein##NM_001017406|S100PBP|64766|S100P binding protein##NM_022753|S100PBP|64766|S100P binding protein##BX647667|S100PBP|64766|S100P binding protein##BC015175|S100PBP|64766|S100P binding protein##NM_003680|YARS|8565|tyrosyl-tRNA synthetase##AK125213|YARS|8565|tyrosyl-tRNA synthetase	0.0	0.0	
chr16	58143372	58143520	reg1018760.p2	3.950	+	BC036495 BC055428 TSC_hg19_v1_chr16_+_58059491	-83964	+	NM_002428	-84165	+	TSC_hg19_v1_chr16_+_58035310 AK293220 AK298473 AK303121 BC010099 AK301494 BC004415 BC007774 BC006291 BC021554	-108114	+	TSC_hg19_v1_chr16_-_58163283 AK027099 AK297819 BC005152 AF087845 AF093680	19786	-	TSC_hg19_v1_chr16_-_58163286 NM_013242	19864	-	DQ893025 DQ896269 AB463465 BC008812 NM_001896	88265	-	BC036495|MMP15|4324|matrix metallopeptidase 15 (membrane-inserted)##BC055428|MMP15|4324|matrix metallopeptidase 15 (membrane-inserted)##NM_002428|MMP15|4324|matrix metallopeptidase 15 (membrane-inserted)##AK293220|C16orf57|79650|chromosome 16 open reading frame 57##AK298473|C16orf57|79650|chromosome 16 open reading frame 57##AK303121|C16orf57|79650|chromosome 16 open reading frame 57##BC010099|C16orf57|79650|chromosome 16 open reading frame 57##AK301494|C16orf57|79650|chromosome 16 open reading frame 57##BC004415|C16orf57|79650|chromosome 16 open reading frame 57##BC007774|C16orf57|79650|chromosome 16 open reading frame 57##BC006291|C16orf57|79650|chromosome 16 open reading frame 57##BC021554|C16orf57|79650|chromosome 16 open reading frame 57##AK027099|C16orf80|29105|chromosome 16 open reading frame 80##AK297819|C16orf80|29105|chromosome 16 open reading frame 80##BC005152|C16orf80|29105|chromosome 16 open reading frame 80##AF087845|C16orf80|29105|chromosome 16 open reading frame 80##AF093680|C16orf80|29105|chromosome 16 open reading frame 80##NM_013242|C16orf80|29105|chromosome 16 open reading frame 80##DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide	0.982839	0.0	denovo_WM_7:51:0.694
chr3	143363488	143363592	reg1014864.p1	3.950	+	BC067737 TSC_hg19_v1_chr3_+_142895211	-468369	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-524889	+	NM_001080415 TSC_hg19_v1_chr3_+_142720443 BC105604 AK296440 BC016323 BC028110 AB002330 BC006474	-643110	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	203727	-	NM_173552 AK315082	327112	+	TSC_hg19_v1_chr3_+_143690915 BC037293	327450	+	NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_001080415|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC105604|U2SURP|23350|U2 snRNP-associated SURP domain containing##AK296440|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC016323|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC028110|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB002330|U2SURP|23350|U2 snRNP-associated SURP domain containing##BC006474|U2SURP|23350|U2 snRNP-associated SURP domain containing##AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58	0.999228	0.77575	CTCF.p2:-6:0.776	denovo_WM_7:73:0.964
chr11	133045329	133045443	reg1013485.p1	3.949	+	AK314077 EU562295 EU562297 AK316491 TSC_hg19_v1_chr11_-_132813671	-231781	-	EU562299 BC117254 BC126251 BC143945 BC143946 BC074742 BC074773 L34774 NM_002545 AK289695	-232372	-	TSC_hg19_v1_chr11_+_131781303 EF043567 BC050716 CU690778	-1264047	+	AK315859 AK315859 TSC_hg19_v1_chr11_-_133402298 BX537377 NM_001012393	356928	-	AF521713 AK098717 NM_174927 BC058039	669995	-	NM_014987 TSC_hg19_v1_chr11_-_133826886	781496	-	AK314077|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562295|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562297|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK316491|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EU562299|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC117254|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC126251|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143945|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143946|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074742|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074773|OPCML|4978|opioid binding protein/cell adhesion molecule-like##L34774|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_002545|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK289695|OPCML|4978|opioid binding protein/cell adhesion molecule-like##EF043567|NTM|50863|neurotrimin##BC050716|NTM|50863|neurotrimin##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK315859|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BX537377|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_001012393|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AF521713|SPATA19|219938|spermatogenesis associated 19##AK098717|SPATA19|219938|spermatogenesis associated 19##NM_174927|SPATA19|219938|spermatogenesis associated 19##BC058039|SPATA19|219938|spermatogenesis associated 19##NM_014987|IGSF9B|22997|immunoglobulin superfamily, member 9B	0.998673	0.0	denovo_WM_7:0:0.537
chr17	3700272	3700385	reg1015349.p2	3.949	+	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	-73112	+	TSC_hg19_v1_chr17_-_3627077 AF289864	-73226	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-100736	-	HQ258689 TSC_hg19_v1_chr17_-_3704463	4125	-	TSC_hg19_v1_chr17_-_3704490 BC113436 BC117207 NM_002208	4183	-	TSC_hg19_v1_chr17_-_3749541 NM_001114118 NM_018553	49182	-	BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC113436|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC117207|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_002208|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##NM_001114118|C17orf85|55421|chromosome 17 open reading frame 85##NM_018553|C17orf85|55421|chromosome 17 open reading frame 85	0.0	0.0	
chr20	47666858	47666981	reg1014072.p2	3.949	+	TSC_hg19_v1_chr20_+_47662875 AF053640	-4031	+	TSC_hg19_v1_chr20_+_47662853 BC108309 NM_001316 AF053641 U33286 AK312306 AK307965 AK297270 AK297314 AK298477 AK300589 BC109313 BC109314	-4093	+	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	-128601	+	TSC_hg19_v1_chr20_-_47804876 AK292859 BC001893 BC010169 AY529074 AK291487 BC007532 AK057739 AK025519 BC095397 AL136601	137867	-	AF061938 AF061939 AF061940 AF061941 AY546099 NM_001037328 NM_004602 NM_017452 NM_017453 NM_017454 TSC_hg19_v1_chr20_-_47804905	137994	-	NM_017895 BC126287 BC130275 BC144125 BC104480 HQ258508 AY044431 AL832131 EU718675 TSC_hg19_v1_chr20_+_47835952 AK300135	168973	+	AF053640|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC108309|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##NM_001316|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AF053641|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##U33286|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK312306|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK307965|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297270|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK297314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK298477|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##AK300589|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109313|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC109314|CSE1L|1434|CSE1 chromosome segregation 1-like (yeast)##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AK292859|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC001893|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC010169|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY529074|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK291487|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC007532|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK057739|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AK025519|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##BC095397|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AL136601|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061938|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061939|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061940|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AF061941|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##AY546099|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_001037328|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_004602|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017452|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017453|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017454|STAU1|6780|staufen, RNA binding protein, homolog 1 (Drosophila)##NM_017895|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC126287|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC130275|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC144125|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##BC104480|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##HQ258508|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AY044431|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AL832131|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##EU718675|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27##AK300135|DDX27|55661|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	1.093524	0.012345	
chr6	135466368	135466487	reg1011182.p2	3.949	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-90433	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-90539	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-195195	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	36021	+	TSC_hg19_v1_chr6_+_135502507 BC064955	36068	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	36159	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	1.512496	0.0	denovo_WM_7:-13:0.510	denovo_WM_7:-31:0.955
chrX	153275366	153275480	reg1012358.p2	3.949	+	NM_003492	-37433	+	TSC_hg19_v1_chrX_-_153236650 L20010 BC063435 NM_005334	-38704	-	BC010606 TSC_hg19_v1_chrX_-_153218266	-57211	-	AF346607 DQ054788 AM392624 AM393211 EU831427 EU831520 AB463802 TSC_hg19_v1_chrX_-_153285300 BC014963	9872	-	TSC_hg19_v1_chrX_-_153285340 BC054000 L76191 NM_001025242 NM_001025243 NM_001569	9914	-	BC062546 TSC_hg19_v1_chrX_-_153363132 AF158180 AY541280	87637	-	NM_003492|TMEM187|8269|transmembrane protein 187##L20010|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##BC063435|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##NM_005334|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##BC010606|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##AF346607|IRAK1|3654|interleukin-1 receptor-associated kinase 1##DQ054788|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM392624|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM393211|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831427|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831520|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC014963|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC054000|IRAK1|3654|interleukin-1 receptor-associated kinase 1##L76191|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025242|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025243|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001569|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC062546|LOC728653|728653|uncharacterized LOC728653##AF158180|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##AY541280|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)	1.999088	0.0	denovo_WM_7:-57:0.623
chr1	145521913	145522005	reg1016106.p1	3.948	+	NM_001184795 AK301983	-5380	+	TSC_hg19_v1_chr1_+_145516386 AB018080 BC011963 CU680134 AF093670 AK023991 CR542047	-5602	+	NM_003846	-5795	+	AF112345 NM_003637 BC140831 BC144637 TSC_hg19_v1_chr1_+_145525029 AK304155 AK304183	3052	+	AK314255 TSC_hg19_v1_chr1_+_145525041 AF074015	3086	+	NM_144698 AK294308 AK091120 AK296861 AX746788 BC101618 BC101620	27275	+	NM_001184795|PEX11B|8799|peroxisomal biogenesis factor 11 beta##AK301983|PEX11B|8799|peroxisomal biogenesis factor 11 beta##AB018080|PEX11B|8799|peroxisomal biogenesis factor 11 beta##BC011963|PEX11B|8799|peroxisomal biogenesis factor 11 beta##AF093670|PEX11B|8799|peroxisomal biogenesis factor 11 beta##AK023991|PEX11B|8799|peroxisomal biogenesis factor 11 beta##CR542047|PEX11B|8799|peroxisomal biogenesis factor 11 beta##NM_003846|PEX11B|8799|peroxisomal biogenesis factor 11 beta##AF112345|ITGA10|8515|integrin, alpha 10##NM_003637|ITGA10|8515|integrin, alpha 10##BC140831|ITGA10|8515|integrin, alpha 10##BC144637|ITGA10|8515|integrin, alpha 10##AK304155|ITGA10|8515|integrin, alpha 10##AK304183|ITGA10|8515|integrin, alpha 10##AK314255|ITGA10|8515|integrin, alpha 10##AF074015|ITGA10|8515|integrin, alpha 10##NM_144698|ANKRD35|148741|ankyrin repeat domain 35##AK294308|ANKRD35|148741|ankyrin repeat domain 35##AK091120|ANKRD35|148741|ankyrin repeat domain 35##AK296861|ANKRD35|148741|ankyrin repeat domain 35##BC101618|ANKRD35|148741|ankyrin repeat domain 35##BC101620|ANKRD35|148741|ankyrin repeat domain 35	0.995666	0.0	denovo_WM_7:32:0.456	denovo_WM_7:33:0.456
chr12	56769453	56769609	reg1001874.p2	3.948	+	CU693184 L27050 AK314892 BC026257 NM_001638 CR936663	-12965	-	TSC_hg19_v1_chr12_-_56753946 AK316516 AK295052 AK295114 NM_005419 NM_198332	-15555	-	TSC_hg19_v1_chr12_-_56753912 AK308051	-15618	-	TSC_hg19_v1_chr12_-_56843191 BC031514 AF098162 AK296869 BC039842 NM_003920	73662	-	HQ258134 BC074913 BC117474 NM_012064	78885	-	NM_207344 TSC_hg19_v1_chr12_+_56862350 AF451989 AK300594 AL832247 BC020844 AK291920 BX647957 AK074733 AF289571	92821	+	L27050|APOF|319|apolipoprotein F##AK314892|APOF|319|apolipoprotein F##BC026257|APOF|319|apolipoprotein F##NM_001638|APOF|319|apolipoprotein F##CR936663|APOF|319|apolipoprotein F##AK316516|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295052|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK295114|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_005419|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##NM_198332|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##AK308051|STAT2|6773|signal transducer and activator of transcription 2, 113kDa##BC031514|TIMELESS|8914|timeless homolog (Drosophila)##AF098162|TIMELESS|8914|timeless homolog (Drosophila)##AK296869|TIMELESS|8914|timeless homolog (Drosophila)##BC039842|TIMELESS|8914|timeless homolog (Drosophila)##NM_003920|TIMELESS|8914|timeless homolog (Drosophila)##HQ258134|MIP|4284|major intrinsic protein of lens fiber##BC074913|MIP|4284|major intrinsic protein of lens fiber##BC117474|MIP|4284|major intrinsic protein of lens fiber##NM_012064|MIP|4284|major intrinsic protein of lens fiber##NM_207344|SPRYD4|283377|SPRY domain containing 4##AF451989|SPRYD4|283377|SPRY domain containing 4##AK300594|SPRYD4|283377|SPRY domain containing 4##AL832247|SPRYD4|283377|SPRY domain containing 4##BC020844|SPRYD4|283377|SPRY domain containing 4##AK291920|SPRYD4|283377|SPRY domain containing 4##BX647957|SPRYD4|283377|SPRY domain containing 4##AK074733|SPRYD4|283377|SPRY domain containing 4##AF289571|SPRYD4|283377|SPRY domain containing 4	0.988367	0.0	denovo_WM_7:-70:0.928
chr16	70453807	70453901	reg1010327.p1	3.948	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-73026	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-120706	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-120778	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	19127	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	34645	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	48986	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	0.998461	0.0	
chr2	233950119	233950268	reg1007227.p2	3.948	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-25077	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-25134	+	BC069151 BC107053 NM_005383	-52812	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	210073	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	210130	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	210164	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	1.9746	0.0	denovo_WM_7:0:0.872
chr6	166926257	166926437	reg1018749.p1	3.948	+	TSC_hg19_v1_chr6_-_166796469 AF125101 AF151887 NM_016098	-129837	-	CU674406 TSC_hg19_v1_chr6_-_166796429 BC000810 AK312201 AK310934	-129938	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	-170313	-	DQ891864 DQ895053 L07598 TSC_hg19_v1_chr6_-_167040629	114230	-	TSC_hg19_v1_chr6_-_167040662 X85106	114322	-	TSC_hg19_v1_chr6_-_167040713 BC002363 NM_021135	114371	-	AF125101|BRP44L|51660|brain protein 44-like##AF151887|BRP44L|51660|brain protein 44-like##NM_016098|BRP44L|51660|brain protein 44-like##BC000810|BRP44L|51660|brain protein 44-like##AK312201|BRP44L|51660|brain protein 44-like##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1##DQ891864|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##DQ895053|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##L07598|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##X85106|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##BC002363|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2##NM_021135|RPS6KA2|6196|ribosomal protein S6 kinase, 90kDa, polypeptide 2	0.972486	0.093204	denovo_WM_7:26:0.663
chr12	120870669	120870826	reg1015664.p1	3.947	+	AB463899 AB012851 NM_002442 TSC_hg19_v1_chr12_-_120806968	-63811	-	AB464016 EU832774 GQ129318 AK311830 BC005386 BC013384 BC106725 BC106726 M21054 NM_000928	-105174	-	NM_012240 TSC_hg19_v1_chr12_+_120740123 BC034736 AF083109 BC109319 BC109320	-130605	+	TSC_hg19_v1_chr12_+_120875920 AK312009 NM_004373 BC107861 BC070186 BC007723 DQ893099 DQ896371	5163	+	U75688 DQ893091 DQ896363 AF161481 AK312006 BC055313 BC002638 NM_016399	13442	-	TSC_hg19_v1_chr12_+_120884261 NM_176818 AK094319	13473	+	AB012851|MSI1|4440|musashi homolog 1 (Drosophila)##NM_002442|MSI1|4440|musashi homolog 1 (Drosophila)##EU832774|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##GQ129318|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##AK311830|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC005386|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC013384|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC106725|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##BC106726|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##M21054|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##NM_000928|PLA2G1B|5319|phospholipase A2, group IB (pancreas)##NM_012240|SIRT4|23409|sirtuin 4##BC034736|SIRT4|23409|sirtuin 4##AF083109|SIRT4|23409|sirtuin 4##BC109319|SIRT4|23409|sirtuin 4##BC109320|SIRT4|23409|sirtuin 4##AK312009|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##NM_004373|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC107861|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC070186|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##BC007723|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##DQ893099|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##DQ896371|COX6A1|1337|cytochrome c oxidase subunit VIa polypeptide 1##U75688|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##DQ893091|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##DQ896363|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##AF161481|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##AK312006|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##BC055313|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##BC002638|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##NM_016399|TRIAP1|51499|TP53 regulated inhibitor of apoptosis 1##NM_176818|GATC|283459|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)##AK094319|GATC|283459|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	0.997019	0.0	denovo_WM_7:-22:0.424	denovo_WM_7:-23:0.424
chr12	123919740	123919849	reg1013183.p2	3.947	+	AY064546 TSC_hg19_v1_chr12_+_123873657	-46165	+	TSC_hg19_v1_chr12_+_123868724 AY102937 AB464199	-51071	+	TSC_hg19_v1_chr12_+_123868678 AK292645 NM_020382	-51139	+	CU680478 DQ892579 DQ895796 TSC_hg19_v1_chr12_-_123921017 AB085763 BC013042	1218	-	TSC_hg19_v1_chr12_-_123921232 AK056934 NM_145058	1447	-	NM_022717 AK290127 TSC_hg19_v1_chr12_+_123942685 BC047678 BC020829 U44799 BC054034	22909	+	AY064546|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AY102937|SETD8|387893|SET domain containing (lysine methyltransferase) 8##AK292645|SETD8|387893|SET domain containing (lysine methyltransferase) 8##NM_020382|SETD8|387893|SET domain containing (lysine methyltransferase) 8##DQ892579|RILPL2|196383|Rab interacting lysosomal protein-like 2##DQ895796|RILPL2|196383|Rab interacting lysosomal protein-like 2##AB085763|RILPL2|196383|Rab interacting lysosomal protein-like 2##BC013042|RILPL2|196383|Rab interacting lysosomal protein-like 2##AK056934|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_145058|RILPL2|196383|Rab interacting lysosomal protein-like 2##NM_022717|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##AK290127|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC047678|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##U44799|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)##BC054034|SNRNP35|11066|small nuclear ribonucleoprotein 35kDa (U11/U12)	0.99832	0.0	denovo_WM_7:-60:0.885
chr1	36856169	36856297	reg1015024.p1	3.947	+	TSC_hg19_v1_chr1_-_36851517 AK075048	-4710	-	AL834137 NM_032017 BC008344 TSC_hg19_v1_chr1_-_36851499 BC007835 AY198395	-4742	-	TSC_hg19_v1_chr1_-_36817157 AK023810	-39059	-	AF394685 TSC_hg19_v1_chr1_-_36863508 AF166092 BC007623 NM_032881	7260	-	AB079075 AK098541 BC018069 NM_145047 NM_206837	59794	-	TSC_hg19_v1_chr1_-_36929984 AB049946 AB209905 AK021626 BC031336 AF265439 AK315441 AK302633 NM_031280	73726	-	AK075048|STK40|83931|serine/threonine kinase 40##AL834137|STK40|83931|serine/threonine kinase 40##NM_032017|STK40|83931|serine/threonine kinase 40##BC008344|STK40|83931|serine/threonine kinase 40##BC007835|STK40|83931|serine/threonine kinase 40##AY198395|STK40|83931|serine/threonine kinase 40##AF394685|LSM10|84967|LSM10, U7 small nuclear RNA associated##AF166092|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC007623|LSM10|84967|LSM10, U7 small nuclear RNA associated##NM_032881|LSM10|84967|LSM10, U7 small nuclear RNA associated##AB079075|OSCP1|127700|organic solute carrier partner 1##AK098541|OSCP1|127700|organic solute carrier partner 1##BC018069|OSCP1|127700|organic solute carrier partner 1##NM_145047|OSCP1|127700|organic solute carrier partner 1##NM_206837|OSCP1|127700|organic solute carrier partner 1##AB049946|MRPS15|64960|mitochondrial ribosomal protein S15##AB209905|MRPS15|64960|mitochondrial ribosomal protein S15##AK021626|MRPS15|64960|mitochondrial ribosomal protein S15##BC031336|MRPS15|64960|mitochondrial ribosomal protein S15##AF265439|MRPS15|64960|mitochondrial ribosomal protein S15##AK315441|MRPS15|64960|mitochondrial ribosomal protein S15##AK302633|MRPS15|64960|mitochondrial ribosomal protein S15##NM_031280|MRPS15|64960|mitochondrial ribosomal protein S15	0.0	0.0	
chr13	80384818	80384951	reg1011101.p1	3.947	+	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-329329	+	TSC_hg19_v1_chr13_+_80055411 AK297197 AK001723	-329462	+	TSC_hg19_v1_chr13_+_80055257 NM_001161407 NM_019080 AB097019 AB097028 AB097029	-329613	+	BC004205 TSC_hg19_v1_chr13_-_80913114	528158	-	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	530180	-	TSC_hg19_v1_chr13_-_84456424 BC051738	4071541	-	AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##AK297197|NDFIP2|54602|Nedd4 family interacting protein 2##AK001723|NDFIP2|54602|Nedd4 family interacting protein 2##NM_001161407|NDFIP2|54602|Nedd4 family interacting protein 2##NM_019080|NDFIP2|54602|Nedd4 family interacting protein 2##AB097019|NDFIP2|54602|Nedd4 family interacting protein 2##AB097028|NDFIP2|54602|Nedd4 family interacting protein 2##AB097029|NDFIP2|54602|Nedd4 family interacting protein 2##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1	0.999873	0.0	denovo_WM_7:76:0.295	denovo_WM_7:77:0.295	denovo_WM_7:78:0.295
chr17	64708002	64708145	reg1013999.p1	3.947	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	-409146	+	TSC_hg19_v1_chr17_+_64298733 BC053321	-409323	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-482548	-	AK290171 TSC_hg19_v1_chr17_+_64831234	123162	+	BC101633 NM_145811 BC101607 AF361351 AF458898	165347	+	TSC_hg19_v1_chr17_+_64960822 NM_014405 AF162692 AK315149 DQ891815 DQ895000 AB529113 BC034532	252816	+	NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##BC053321|PRKCA|5578|protein kinase C, alpha##DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101633|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_145811|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##BC101607|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF361351|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##AF458898|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5##NM_014405|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AF162692|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##AK315149|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ891815|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##DQ895000|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4##BC034532|CACNG4|27092|calcium channel, voltage-dependent, gamma subunit 4	0.499921	0.0	denovo_WM_7:-38:0.355
chr17	78729525	78729625	reg1016850.p1	3.947	+	BC008754 AK055912 TSC_hg19_v1_chr17_+_78518849	-210757	+	TSC_hg19_v1_chr17_+_78518628 AK295964 NM_001163034 NM_020761 AK296321 BC064515	-210926	+	EU831771 EU831849 BC089441 TSC_hg19_v1_chr17_-_78450408 U61849 AK127335 NM_002522	-279248	-	TSC_hg19_v1_chr17_+_78935064 BC073898	205557	+	TSC_hg19_v1_chr17_+_78965640 NM_024591	236066	+	TSC_hg19_v1_chr17_+_78965674 AK292105 AK223187 BC010108 AK021811 CU679625 AY329087 CR457284	236119	+	AK055912|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK295964|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_001163034|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_020761|RPTOR|57521|regulatory associated protein of MTOR, complex 1##AK296321|RPTOR|57521|regulatory associated protein of MTOR, complex 1##BC064515|RPTOR|57521|regulatory associated protein of MTOR, complex 1##EU831771|NPTX1|4884|neuronal pentraxin I##EU831849|NPTX1|4884|neuronal pentraxin I##BC089441|NPTX1|4884|neuronal pentraxin I##U61849|NPTX1|4884|neuronal pentraxin I##AK127335|NPTX1|4884|neuronal pentraxin I##NM_002522|NPTX1|4884|neuronal pentraxin I##BC073898|RPTOR|57521|regulatory associated protein of MTOR, complex 1##NM_024591|CHMP6|79643|charged multivesicular body protein 6##AK292105|CHMP6|79643|charged multivesicular body protein 6##AK223187|CHMP6|79643|charged multivesicular body protein 6##BC010108|CHMP6|79643|charged multivesicular body protein 6##AK021811|CHMP6|79643|charged multivesicular body protein 6##AY329087|CHMP6|79643|charged multivesicular body protein 6##CR457284|CHMP6|79643|charged multivesicular body protein 6	1.722218	0.157563	denovo_WM_7:-10:0.315	denovo_WM_7:-12:0.276	denovo_WM_7:-27:0.275	denovo_WM_7:-28:0.361
chr22	29706234	29706368	reg1013279.p2	3.947	+	TSC_hg19_v1_chr22_+_29703012 NM_006478 NM_152236 NM_152237 AK223602 AK225484 Y07846 BC011047 BC001782 BC007624 AK093386 AK122829 AX748091	-3286	+	TSC_hg19_v1_chr22_+_29664281 X66899 BC000527 AK127624 CR456490 AK225102 AK056309 BC004817 AK056681 AK225096 BC072442 AF254086 BC011048 AB463036 AF327066 CU013087 CU013375 CU679880 CU687234 EU487217	-42024	+	NM_001163285 NM_001163286 NM_001163287 NM_005243 NM_013986 TSC_hg19_v1_chr22_+_29664088	-42254	+	BC040434 TSC_hg19_v1_chr22_-_29711492 Y07847	5213	-	TSC_hg19_v1_chr22_-_29711687 BC058077 BC050739 BC022473 NM_001007279 NM_006477	5397	-	L13939 TSC_hg19_v1_chr22_-_29784436	78136	-	NM_006478|GAS2L1|10634|growth arrest-specific 2 like 1##NM_152236|GAS2L1|10634|growth arrest-specific 2 like 1##NM_152237|GAS2L1|10634|growth arrest-specific 2 like 1##AK223602|GAS2L1|10634|growth arrest-specific 2 like 1##AK225484|GAS2L1|10634|growth arrest-specific 2 like 1##Y07846|GAS2L1|10634|growth arrest-specific 2 like 1##BC011047|GAS2L1|10634|growth arrest-specific 2 like 1##BC001782|GAS2L1|10634|growth arrest-specific 2 like 1##BC007624|GAS2L1|10634|growth arrest-specific 2 like 1##AK093386|GAS2L1|10634|growth arrest-specific 2 like 1##AK122829|GAS2L1|10634|growth arrest-specific 2 like 1##X66899|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC000527|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK127624|EWSR1|2130|Ewing sarcoma breakpoint region 1##CR456490|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK225102|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK056309|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC004817|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK056681|EWSR1|2130|Ewing sarcoma breakpoint region 1##AK225096|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC072442|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC011048|EWSR1|2130|Ewing sarcoma breakpoint region 1##AF327066|EWSR1|2130|Ewing sarcoma breakpoint region 1##CU013087|EWSR1|2130|Ewing sarcoma breakpoint region 1##CU013375|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163285|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163286|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163287|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_005243|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_013986|EWSR1|2130|Ewing sarcoma breakpoint region 1##BC040434|RASL10A|10633|RAS-like, family 10, member A##Y07847|RASL10A|10633|RAS-like, family 10, member A##BC058077|RASL10A|10633|RAS-like, family 10, member A##BC050739|RASL10A|10633|RAS-like, family 10, member A##BC022473|RASL10A|10633|RAS-like, family 10, member A##NM_001007279|RASL10A|10633|RAS-like, family 10, member A##NM_006477|RASL10A|10633|RAS-like, family 10, member A##L13939|AP1B1|162|adaptor-related protein complex 1, beta 1 subunit	1.986479	0.0	denovo_WM_7:-43:0.748	denovo_WM_7:-60:0.972
chr2	44271411	44271547	reg1013784.p1	3.947	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-48340	-	BC026034 TSC_hg19_v1_chr2_-_44223116	-48361	-	AK299869 TSC_hg19_v1_chr2_-_44223114 AK125781 AK290016 AK308348	-48366	-	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	124536	+	TSC_hg19_v1_chr2_+_44396066 AL833035	124631	+	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	231156	+	BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##BC026034|LRPPRC|10128|leucine-rich PPR-motif containing##AK299869|LRPPRC|10128|leucine-rich PPR-motif containing##AK125781|LRPPRC|10128|leucine-rich PPR-motif containing##AK290016|LRPPRC|10128|leucine-rich PPR-motif containing##AK308348|LRPPRC|10128|leucine-rich PPR-motif containing##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1	0.0	0.403508	CTCF.p2:99:0.283
chr7	65274414	65274554	reg1002952.p1	3.947	+	TSC_hg19_v1_chr7_-_65235746 BC066990	-38739	-	TSC_hg19_v1_chr7_+_65216060 BC052238 BC073761 BC122874 BC119782	-58401	+	TSC_hg19_v1_chr7_-_65215912 BX647963	-58566	-	TSC_hg19_v1_chr7_+_65338277 BC027734 NM_173517 BX647631 AY423045	63765	+	AK289522 TSC_hg19_v1_chr7_+_65338347	63861	+	TSC_hg19_v1_chr7_+_65338352 AK304077	63892	+	BC066990|LOC441242|441242|uncharacterized LOC441242##BC052238|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC073761|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC122874|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC119782|CCT6P1|643253|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1##BC027734|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##NM_173517|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##BX647631|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AY423045|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK289522|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1##AK304077|VKORC1L1|154807|vitamin K epoxide reductase complex, subunit 1-like 1	0.0	0.0	
chrX	1223859	1223954	reg1009993.p1	3.947	+	NM_000451 NM_006883 U89331	-638828	+	AK293506 NM_013239	-876217	-	NM_018390 BC064136 BC005028 BC000888 BC032072	-1025799	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	107678	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	163808	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	177677	+	NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	0.99566	0.0	denovo_WM_7:53:0.456	denovo_WM_7:54:0.456
chr17	1958263	1958371	reg1017245.p1	3.946	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-13009	+	TSC_hg19_v1_chr17_+_1933446 S81752 U34880 AF321876 NM_001383 AK314015 BC096086 BC096087 BC096088 BC096089 BC003099	-24896	+	BC128608 NM_178568	-30140	-	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	81	+	DQ187313 NM_001098202	1240	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	248495	-	NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##S81752|DPH1|1801|DPH1 homolog (S. cerevisiae)##U34880|DPH1|1801|DPH1 homolog (S. cerevisiae)##AF321876|DPH1|1801|DPH1 homolog (S. cerevisiae)##NM_001383|DPH1|1801|DPH1 homolog (S. cerevisiae)##AK314015|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096086|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096087|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096088|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096089|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC003099|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC128608|RTN4RL1|146760|reticulon 4 receptor-like 1##NM_178568|RTN4RL1|146760|reticulon 4 receptor-like 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.0	0.511092	CTCF.p2:3:0.511
chr17	26399310	26399428	reg1010125.p2	3.946	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-29368	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-29716	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-178978	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	246824	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	263117	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	263334	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	1.079504	0.0	denovo_WM_7:-6:0.442	denovo_WM_7:-7:0.436
chr4	151933755	151933866	reg1009829.p1	3.946	+	TSC_hg19_v1_chr4_-_151773972 BC172218	-159816	-	TSC_hg19_v1_chr4_-_151770612 AB208838	-163161	-	NM_006439	-430734	+	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	2608	-	AF216648 NM_006726	2838	-	TSC_hg19_v1_chr4_-_151936880 AK098039	3080	-	AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	0.0	0.0	
chr12	92528206	92528343	reg1009911.p2	3.945	+	NM_001920	-951469	-	AL355731 TSC_hg19_v1_chr12_-_91576581	-951694	-	AK291309 BX571756 TSC_hg19_v1_chr12_-_91573325 NM_133503	-954963	-	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	11369	-	AJ845165 AJ845166 NM_001025233	289460	+	AJ845168 NM_001025232	293649	-	NM_001920|DCN|1634|decorin##AL355731|DCN|1634|decorin##AK291309|DCN|1634|decorin##BX571756|DCN|1634|decorin##NM_133503|DCN|1634|decorin##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand	0.953222	0.0	denovo_WM_7:22:0.852
chr1	9824724	9824880	reg1014840.p1	3.945	+	TSC_hg19_v1_chr1_+_9711801 AK314191 NM_005026 U86453 Y10055 BC030263	-112998	+	BC137291 NM_001010866 NM_001130924 TSC_hg19_v1_chr1_+_9648968 BC121187	-175846	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	-225166	+	AB587312 AY753301 DQ891263 DQ894450 AK289798 TSC_hg19_v1_chr1_-_9883992	59093	-	TSC_hg19_v1_chr1_-_9884023 AK304813	59219	-	TSC_hg19_v1_chr1_-_9884024 BC033902	59242	-	AK314191|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##NM_005026|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##U86453|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##Y10055|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC030263|PIK3CD|5293|phosphoinositide-3-kinase, catalytic, delta polypeptide##BC137291|TMEM201|199953|transmembrane protein 201##NM_001010866|TMEM201|199953|transmembrane protein 201##NM_001130924|TMEM201|199953|transmembrane protein 201##BC121187|TMEM201|199953|transmembrane protein 201##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33##AY753301|CLSTN1|22883|calsyntenin 1##DQ891263|CLSTN1|22883|calsyntenin 1##DQ894450|CLSTN1|22883|calsyntenin 1##AK289798|CLSTN1|22883|calsyntenin 1##AK304813|CLSTN1|22883|calsyntenin 1##BC033902|CLSTN1|22883|calsyntenin 1	1.496416	0.0	denovo_WM_7:-84:0.334	denovo_WM_7:-99:0.339
chr6	111802030	111802156	reg1015535.p1	3.945	+	TSC_hg19_v1_chr6_+_111580568 BC036115	-221521	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	-221570	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-393298	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	2055	-	BC035823 TSC_hg19_v1_chr6_-_111804371	2260	-	AF071798 NM_002912 TSC_hg19_v1_chr6_-_111804420 AF058701	2331	-	BC036115|KIAA1919|91749|KIAA1919##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##BC035823|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF071798|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##NM_002912|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF058701|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	1.011056	0.0	denovo_WM_7:-41:0.304	denovo_WM_7:-42:0.304	denovo_WM_7:-43:0.304
chrX	9910029	9910149	reg1010418.p1	3.945	+	BC140866 TSC_hg19_v1_chrX_+_9754543	-155546	+	TSC_hg19_v1_chrX_+_9754468 NM_001649 X83543	-155609	+	Z48804 BC015657 BC068977 NM_000273	-176129	-	NM_001195081	25308	+	BC098455 NM_015691	73704	+	NM_001830 TSC_hg19_v1_chrX_+_10125020 AK225287 X77197 AK289564 BC130278	214965	+	BC140866|SHROOM2|357|shroom family member 2##NM_001649|SHROOM2|357|shroom family member 2##X83543|SHROOM2|357|shroom family member 2##Z48804|GPR143|4935|G protein-coupled receptor 143##BC015657|GPR143|4935|G protein-coupled receptor 143##BC068977|GPR143|4935|G protein-coupled receptor 143##NM_000273|GPR143|4935|G protein-coupled receptor 143##NM_001195081|LOC100288814|100288814|uncharacterized LOC100288814##BC098455|WWC3|55841|WWC family member 3##NM_015691|WWC3|55841|WWC family member 3##NM_001830|CLCN4|1183|chloride channel 4##AK225287|CLCN4|1183|chloride channel 4##X77197|CLCN4|1183|chloride channel 4##AK289564|CLCN4|1183|chloride channel 4##BC130278|CLCN4|1183|chloride channel 4	0.997734	0.0	
chr1	223329740	223329854	reg1012169.p1	3.944	+	TSC_hg19_v1_chr1_-_223316591 NM_003268	-13191	-	TSC_hg19_v1_chr1_+_222988422 NM_032890	-341406	+	AK125494 NM_207468	-419240	+	AK096265 AK000914 BC004888 AK296923 EF560748 AK295553 AY358495 NM_001037175 NM_017982	207674	-	NM_152610 AK093047 AX747883 BC031066 BC030026 AB464493 CU688810	236968	+	TSC_hg19_v1_chr1_-_223853364 BC157893	523573	-	NM_003268|TLR5|7100|toll-like receptor 5##NM_032890|DISP1|84976|dispatched homolog 1 (Drosophila)##AK125494|FAM177B|400823|family with sequence similarity 177, member B##NM_207468|FAM177B|400823|family with sequence similarity 177, member B##AK096265|SUSD4|55061|sushi domain containing 4##AK000914|SUSD4|55061|sushi domain containing 4##BC004888|SUSD4|55061|sushi domain containing 4##AK296923|SUSD4|55061|sushi domain containing 4##EF560748|SUSD4|55061|sushi domain containing 4##AK295553|SUSD4|55061|sushi domain containing 4##AY358495|SUSD4|55061|sushi domain containing 4##NM_001037175|SUSD4|55061|sushi domain containing 4##NM_017982|SUSD4|55061|sushi domain containing 4##NM_152610|C1orf65|164127|chromosome 1 open reading frame 65##AK093047|C1orf65|164127|chromosome 1 open reading frame 65##BC031066|C1orf65|164127|chromosome 1 open reading frame 65##BC030026|C1orf65|164127|chromosome 1 open reading frame 65##BC157893|CAPN8|388743|calpain 8	0.992257	0.0	denovo_WM_7:-69:0.837
chr12	50390391	50390546	reg1018378.p2	3.944	+	NM_001652 U48408	-23849	+	NM_001651	-35190	+	AK225940 NM_000486 BC042496 S73196 S73197 CR542024	-45900	+	BC024144 AB030251 TSC_hg19_v1_chr12_-_50419242 AK000733 AL136794 BC032754 AK315785 NM_001126103 NM_001126104 NM_013277	28765	-	NM_001095 NM_020039 U78180 U78181 BC028722 AK290010	61093	+	TSC_hg19_v1_chr12_+_50479018 NM_003076 NM_139071 U66617 BC009368	88519	+	NM_001652|AQP6|363|aquaporin 6, kidney specific##U48408|AQP6|363|aquaporin 6, kidney specific##NM_001651|AQP5|362|aquaporin 5##AK225940|AQP2|359|aquaporin 2 (collecting duct)##NM_000486|AQP2|359|aquaporin 2 (collecting duct)##BC042496|AQP2|359|aquaporin 2 (collecting duct)##S73196|AQP2|359|aquaporin 2 (collecting duct)##S73197|AQP2|359|aquaporin 2 (collecting duct)##CR542024|AQP2|359|aquaporin 2 (collecting duct)##BC024144|RACGAP1|29127|Rac GTPase activating protein 1##AB030251|RACGAP1|29127|Rac GTPase activating protein 1##AK000733|RACGAP1|29127|Rac GTPase activating protein 1##AL136794|RACGAP1|29127|Rac GTPase activating protein 1##BC032754|RACGAP1|29127|Rac GTPase activating protein 1##AK315785|RACGAP1|29127|Rac GTPase activating protein 1##NM_001126103|RACGAP1|29127|Rac GTPase activating protein 1##NM_001126104|RACGAP1|29127|Rac GTPase activating protein 1##NM_013277|RACGAP1|29127|Rac GTPase activating protein 1##NM_001095|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##NM_020039|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##U78180|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##U78181|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##BC028722|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##AK290010|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##NM_003076|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_139071|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##U66617|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC009368|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	1.993077	0.0	
chr12	8782131	8782245	reg1013447.p2	3.944	+	AB040431 BC006296 NM_020661	-16749	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-88714	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-115957	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	33108	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	33213	-	AK124368 TSC_hg19_v1_chr12_-_8815486	33294	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	0.0	0.0	
chr17	26384556	26384640	reg1011526.p1	3.944	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-14597	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-14945	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-164207	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	261595	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	277888	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	278105	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.053004	0.0	
chr3	15839426	15839606	reg1003914.p3	3.944	+	AY367056 NM_001195099 BC035170 BC048975	-41439	-	TSC_hg19_v1_chr3_+_15643452 AK301838	-196053	+	AK297033 TSC_hg19_v1_chr3_+_15643251 NM_000060 AK313252 AK294301 U03274 BC012099 CU680214	-196268	+	TSC_hg19_v1_chr3_-_15839678 AK293770 NM_001195098	166	-	AB002377 NM_015199 TSC_hg19_v1_chr3_-_15901096	61496	-	AL831925 AK225673 AK312425 NM_054110 AY358443 AL832736 BC014789	376678	+	AY367056|ANKRD28|23243|ankyrin repeat domain 28##NM_001195099|ANKRD28|23243|ankyrin repeat domain 28##BC035170|ANKRD28|23243|ankyrin repeat domain 28##BC048975|ANKRD28|23243|ankyrin repeat domain 28##AK301838|BTD|686|biotinidase##AK297033|BTD|686|biotinidase##NM_000060|BTD|686|biotinidase##AK313252|BTD|686|biotinidase##AK294301|BTD|686|biotinidase##U03274|BTD|686|biotinidase##BC012099|BTD|686|biotinidase##AK293770|ANKRD28|23243|ankyrin repeat domain 28##NM_001195098|ANKRD28|23243|ankyrin repeat domain 28##AB002377|ANKRD28|23243|ankyrin repeat domain 28##NM_015199|ANKRD28|23243|ankyrin repeat domain 28##AL831925|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AK312425|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##NM_054110|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AY358443|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##AL832736|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2##BC014789|GALNTL2|117248|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	0.0	0.0	
chr5	59837204	59837384	reg1012389.p1	3.944	+	TSC_hg19_v1_chr5_+_59784006 AL050198 AK094518	-53254	+	TSC_hg19_v1_chr5_-_59783893 AY245866 AK307363 NM_001165899	-53390	-	NM_001104631	-647674	-	TSC_hg19_v1_chr5_-_59995928 AF490257	158622	-	TSC_hg19_v1_chr5_-_59995963 BC019075 AF303178 AK002114 AK299242 AK300782 AK290684 NM_001145208 NM_018369	158671	-	AB181393 BC094792 TSC_hg19_v1_chr5_-_60140097 NM_001104558 NM_024930	302777	-	AL050198|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)##AK094518|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)##AY245866|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AK307363|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001165899|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001104631|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF490257|DEPDC1B|55789|DEP domain containing 1B##BC019075|DEPDC1B|55789|DEP domain containing 1B##AF303178|DEPDC1B|55789|DEP domain containing 1B##AK002114|DEPDC1B|55789|DEP domain containing 1B##AK299242|DEPDC1B|55789|DEP domain containing 1B##AK300782|DEPDC1B|55789|DEP domain containing 1B##AK290684|DEPDC1B|55789|DEP domain containing 1B##NM_001145208|DEPDC1B|55789|DEP domain containing 1B##NM_018369|DEPDC1B|55789|DEP domain containing 1B##AB181393|ELOVL7|79993|ELOVL fatty acid elongase 7##BC094792|ELOVL7|79993|ELOVL fatty acid elongase 7##NM_001104558|ELOVL7|79993|ELOVL fatty acid elongase 7##NM_024930|ELOVL7|79993|ELOVL fatty acid elongase 7	0.0	0.0	
chr9	121157658	121157793	reg1014469.p1	3.944	+	TSC_hg19_v1_chr9_+_120466680 U93091 BC025294 AK226155 U88880 BC117422 BC143841 AB445638	-691038	+	TSC_hg19_v1_chr9_+_120466621 AK293068 AK303730	-691111	+	TSC_hg19_v1_chr9_+_120466459 NM_138554 AK290053	-691261	+	BC071702 BC065196 AF027734 BC021560 AK293649 TSC_hg19_v1_chr9_-_122131727 NM_014618	973933	-	AB489151 BC136275 BC143732 BC143734 BC143753 BC143755 BC143760 BC143762 BC143764 TSC_hg19_v1_chr9_-_123342438 AF448860 AB046853 BC146782 BC019577 BX537421 AL833481 BX537759 AK122913 BX537708 NM_001011649 NM_018249	2184628	-	TSC_hg19_v1_chr9_-_123476749 AY358370 AK295380 NM_001080497	2318992	-	U93091|TLR4|7099|toll-like receptor 4##BC025294|TLR4|7099|toll-like receptor 4##AK226155|TLR4|7099|toll-like receptor 4##U88880|TLR4|7099|toll-like receptor 4##BC117422|TLR4|7099|toll-like receptor 4##BC143841|TLR4|7099|toll-like receptor 4##AB445638|TLR4|7099|toll-like receptor 4##AK293068|TLR4|7099|toll-like receptor 4##AK303730|TLR4|7099|toll-like receptor 4##NM_138554|TLR4|7099|toll-like receptor 4##AK290053|TLR4|7099|toll-like receptor 4##BC071702|DBC1|1620|deleted in bladder cancer 1##BC065196|DBC1|1620|deleted in bladder cancer 1##AF027734|DBC1|1620|deleted in bladder cancer 1##BC021560|DBC1|1620|deleted in bladder cancer 1##AK293649|DBC1|1620|deleted in bladder cancer 1##NM_014618|DBC1|1620|deleted in bladder cancer 1##BC136275|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143732|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143734|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143753|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143755|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143760|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143762|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143764|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AF448860|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AB046853|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC146782|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC019577|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537421|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AL833481|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537759|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AK122913|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537708|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_001011649|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_018249|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AY358370|MEGF9|1955|multiple EGF-like-domains 9##AK295380|MEGF9|1955|multiple EGF-like-domains 9##NM_001080497|MEGF9|1955|multiple EGF-like-domains 9	0.981559	0.0	denovo_WM_7:-21:0.255	denovo_WM_7:-22:0.727
chr9	14428873	14428982	reg1019698.p2	3.944	+	AK131233 NM_001190738	-29946	-	TSC_hg19_v1_chr9_-_14314141 BX648845 NM_001190737 NM_005596	-114837	-	TSC_hg19_v1_chr9_-_14313945 U70862	-114975	-	AF161360 TSC_hg19_v1_chr9_-_14693311 AK292960	264393	-	TSC_hg19_v1_chr9_-_14693475 BC042558 NM_178566	264542	-	AF400435 BC069371 BC069405 BC069491 BC069503 BC103976 BC103977 CU686794 CU686860 NM_005454	293764	-	AK131233|NFIB|4781|nuclear factor I/B##NM_001190738|NFIB|4781|nuclear factor I/B##BX648845|NFIB|4781|nuclear factor I/B##NM_001190737|NFIB|4781|nuclear factor I/B##NM_005596|NFIB|4781|nuclear factor I/B##U70862|NFIB|4781|nuclear factor I/B##AF161360|ZDHHC21|340481|zinc finger, DHHC-type containing 21##AK292960|ZDHHC21|340481|zinc finger, DHHC-type containing 21##BC042558|ZDHHC21|340481|zinc finger, DHHC-type containing 21##NM_178566|ZDHHC21|340481|zinc finger, DHHC-type containing 21##AF400435|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069371|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069405|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069491|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC069503|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC103976|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##BC103977|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)##NM_005454|CER1|9350|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)	0.165964	0.998373	CTCF.p2:30:0.998
chr1	160738285	160738406	reg1015716.p1	3.943	+	AK298548 AK298499 AY358512 AL834424 AK301438 TSC_hg19_v1_chr1_+_160709067 AK290706 AK292097 AK292148 AK301137 AK301432 AF390894 AB027233 NM_021181 AF291815 AJ271869 AJ276429 BC027867 AB590100 AM392941 AM393275 EU832487 EU832567	-29281	+	BT019813 CR457012 AB590257 CU688852 DQ896316 EU176422 M59904 M37766 BC016182 NM_001778 X06341 BC030224 AK225636 AK310624 AK310744	-56759	-	AK314244 NM_003037 BC012602	-121282	-	NM_001033667 NM_002348 BC121049 AF244129 AK292048 AK303403 BC042905 BC064485 BC027920 L42621	27653	+	AB528046 AF145782 CU691064 BC053985 AJ245375 AJ245376 AJ245377 BC041607 AF105261 AF242540 AF107761 AK313201 AF117711 AK295950 BC028073 NM_001166663 NM_001166664 NM_016382	94233	-	AY619691 AB036706 AF271386 AK000029 AY619692 AK222533 AY358359 AY157362 AY065972 AY157361 BC020664 NM_017625 AY549722	116613	-	AK298548|SLAMF7|57823|SLAM family member 7##AK298499|SLAMF7|57823|SLAM family member 7##AY358512|SLAMF7|57823|SLAM family member 7##AL834424|SLAMF7|57823|SLAM family member 7##AK301438|SLAMF7|57823|SLAM family member 7##AK290706|SLAMF7|57823|SLAM family member 7##AK292097|SLAMF7|57823|SLAM family member 7##AK292148|SLAMF7|57823|SLAM family member 7##AK301137|SLAMF7|57823|SLAM family member 7##AK301432|SLAMF7|57823|SLAM family member 7##AF390894|SLAMF7|57823|SLAM family member 7##AB027233|SLAMF7|57823|SLAM family member 7##NM_021181|SLAMF7|57823|SLAM family member 7##AF291815|SLAMF7|57823|SLAM family member 7##AJ271869|SLAMF7|57823|SLAM family member 7##AJ276429|SLAMF7|57823|SLAM family member 7##BC027867|SLAMF7|57823|SLAM family member 7##AM392941|SLAMF7|57823|SLAM family member 7##AM393275|SLAMF7|57823|SLAM family member 7##EU832487|SLAMF7|57823|SLAM family member 7##EU832567|SLAMF7|57823|SLAM family member 7##BT019813|CD48|962|CD48 molecule##CR457012|CD48|962|CD48 molecule##DQ896316|CD48|962|CD48 molecule##EU176422|CD48|962|CD48 molecule##M59904|CD48|962|CD48 molecule##M37766|CD48|962|CD48 molecule##BC016182|CD48|962|CD48 molecule##NM_001778|CD48|962|CD48 molecule##X06341|CD48|962|CD48 molecule##BC030224|CD48|962|CD48 molecule##AK225636|CD48|962|CD48 molecule##AK310624|CD48|962|CD48 molecule##AK310744|CD48|962|CD48 molecule##AK314244|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_003037|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BC012602|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_001033667|LY9|4063|lymphocyte antigen 9##NM_002348|LY9|4063|lymphocyte antigen 9##BC121049|LY9|4063|lymphocyte antigen 9##AF244129|LY9|4063|lymphocyte antigen 9##AK292048|LY9|4063|lymphocyte antigen 9##AK303403|LY9|4063|lymphocyte antigen 9##BC042905|LY9|4063|lymphocyte antigen 9##BC064485|LY9|4063|lymphocyte antigen 9##BC027920|LY9|4063|lymphocyte antigen 9##L42621|LY9|4063|lymphocyte antigen 9##AF145782|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC053985|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245375|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245376|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AJ245377|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC041607|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF105261|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF242540|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF107761|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK313201|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AF117711|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AK295950|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##BC028073|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166663|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_001166664|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##NM_016382|CD244|51744|CD244 molecule, natural killer cell receptor 2B4##AY619691|ITLN1|55600|intelectin 1 (galactofuranose binding)##AB036706|ITLN1|55600|intelectin 1 (galactofuranose binding)##AF271386|ITLN1|55600|intelectin 1 (galactofuranose binding)##AK000029|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY619692|ITLN1|55600|intelectin 1 (galactofuranose binding)##AK222533|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY358359|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY157362|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY065972|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY157361|ITLN1|55600|intelectin 1 (galactofuranose binding)##BC020664|ITLN1|55600|intelectin 1 (galactofuranose binding)##NM_017625|ITLN1|55600|intelectin 1 (galactofuranose binding)##AY549722|ITLN1|55600|intelectin 1 (galactofuranose binding)	0.0	0.0	
chr17	49230677	49230743	reg1017630.p2	3.943	+	TSC_hg19_v1_chr17_-_49198227 AF327452 BC106048 AK302789 AY850123 AB011088 BC146755 BC153878 AK091921 AX747254 NM_001130527 NM_001130528 NM_003971	-32555	-	TSC_hg19_v1_chr17_-_49124138 BC007524 BC059946 AK299553 AK307793 AK295098 AK309214 AK024068 NM_001251971	-106482	-	AK313904 NM_001243877	-285372	-	NM_001018136 TSC_hg19_v1_chr17_+_49230927 AK291105 NM_000269 NM_198175	201	+	TSC_hg19_v1_chr17_+_49230932 AL360191 AF487339	222	+	TSC_hg19_v1_chr17_+_49230947 AK309160 AK313448 X17620 X73066 AL360166	233	+	AF327452|SPAG9|9043|sperm associated antigen 9##AK302789|SPAG9|9043|sperm associated antigen 9##AY850123|SPAG9|9043|sperm associated antigen 9##AB011088|SPAG9|9043|sperm associated antigen 9##BC146755|SPAG9|9043|sperm associated antigen 9##BC153878|SPAG9|9043|sperm associated antigen 9##AK091921|SPAG9|9043|sperm associated antigen 9##NM_001130527|SPAG9|9043|sperm associated antigen 9##NM_001130528|SPAG9|9043|sperm associated antigen 9##NM_003971|SPAG9|9043|sperm associated antigen 9##BC007524|SPAG9|9043|sperm associated antigen 9##BC059946|SPAG9|9043|sperm associated antigen 9##AK299553|SPAG9|9043|sperm associated antigen 9##AK307793|SPAG9|9043|sperm associated antigen 9##AK295098|SPAG9|9043|sperm associated antigen 9##AK309214|SPAG9|9043|sperm associated antigen 9##AK024068|SPAG9|9043|sperm associated antigen 9##NM_001251971|SPAG9|9043|sperm associated antigen 9##AK313904|TOB1|10140|transducer of ERBB2, 1##NM_001243877|TOB1|10140|transducer of ERBB2, 1##NM_001018136|NME1-NME2|654364|NME1-NME2 readthrough##AK291105|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_000269|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##NM_198175|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360191|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AF487339|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AK309160|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AK313448|NME1-NME2|654364|NME1-NME2 readthrough##X17620|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##X73066|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in##AL360166|NME1|4830|non-metastatic cells 1, protein (NM23A) expressed in	0.0	0.0	
chr17	76693646	76693826	reg1007160.p2	3.943	+	NM_173628	-120261	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-319006	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-337579	-	AK316277 TSC_hg19_v1_chr17_-_76719649	25911	-	TSC_hg19_v1_chr17_-_76719676 AK293894	26015	-	TSC_hg19_v1_chr17_-_76732958 AK311535	39262	-	NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	0.995448	0.0	denovo_WM_7:-34:0.433	denovo_WM_7:-42:0.325
chr2	62289256	62289333	reg1001003.p2	3.943	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-156465	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-173508	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-173560	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	133972	+	BC047439 AK091902 AX747245 NM_198276	444245	-	AK292545 NM_001142615	611691	+	AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1	1.227231	0.0	denovo_WM_7:76:0.594
chr5	123816862	123817002	reg1003343.p1	3.943	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-969050	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1057788	-	NM_001136239 AK297992 AF272898 AF272899	-1392088	+	BC131507 AB033107 BC151226 NM_020747	263856	-	NM_001146319 AK316288 AK300154	1878882	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1941911	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr6	144121961	144122027	reg1016252.p1	3.943	+	TSC_hg19_v1_chr6_+_143999112 AK298263 NM_001100164 NM_001100165 CR749345 AK297799	-122817	+	NM_001100166 NM_014721 AK300221 AB014580 BC152416 BC150630	-192632	+	CU678350 AK296485 BC003060 AK075458 TSC_hg19_v1_chr6_-_143832841 AY358551 BC051268 AK315475 NM_032020	-289100	-	TSC_hg19_v1_chr6_+_144164476 AK095269 BC009855 NM_032860	42495	+	TSC_hg19_v1_chr6_+_144164521 AK300360	42542	+	BC146950 BC146969 BC171862 NM_001013623	63578	+	AK298263|PHACTR2|9749|phosphatase and actin regulator 2##NM_001100164|PHACTR2|9749|phosphatase and actin regulator 2##NM_001100165|PHACTR2|9749|phosphatase and actin regulator 2##CR749345|PHACTR2|9749|phosphatase and actin regulator 2##AK297799|PHACTR2|9749|phosphatase and actin regulator 2##NM_001100166|PHACTR2|9749|phosphatase and actin regulator 2##NM_014721|PHACTR2|9749|phosphatase and actin regulator 2##AK300221|PHACTR2|9749|phosphatase and actin regulator 2##AB014580|PHACTR2|9749|phosphatase and actin regulator 2##BC152416|PHACTR2|9749|phosphatase and actin regulator 2##BC150630|PHACTR2|9749|phosphatase and actin regulator 2##AK296485|FUCA2|2519|fucosidase, alpha-L- 2, plasma##BC003060|FUCA2|2519|fucosidase, alpha-L- 2, plasma##AK075458|FUCA2|2519|fucosidase, alpha-L- 2, plasma##AY358551|FUCA2|2519|fucosidase, alpha-L- 2, plasma##BC051268|FUCA2|2519|fucosidase, alpha-L- 2, plasma##AK315475|FUCA2|2519|fucosidase, alpha-L- 2, plasma##NM_032020|FUCA2|2519|fucosidase, alpha-L- 2, plasma##BC009855|LTV1|84946|LTV1 homolog (S. cerevisiae)##NM_032860|LTV1|84946|LTV1 homolog (S. cerevisiae)##AK300360|LTV1|84946|LTV1 homolog (S. cerevisiae)##BC146950|C6orf94|153918|chromosome 6 open reading frame 94##BC146969|C6orf94|153918|chromosome 6 open reading frame 94##BC171862|C6orf94|153918|chromosome 6 open reading frame 94##NM_001013623|C6orf94|153918|chromosome 6 open reading frame 94	0.0	0.0	
chr7	43690394	43690503	reg1014978.p1	3.943	+	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	-67754	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-538222	+	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	-718479	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	78646	-	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	107819	+	TSC_hg19_v1_chr7_+_43798283 AK291862 X93086 U34877	107868	+	NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32##BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A##AK291862|BLVRA|644|biliverdin reductase A##X93086|BLVRA|644|biliverdin reductase A##U34877|BLVRA|644|biliverdin reductase A	0.993371	0.0	denovo_WM_7:-25:0.967
chr9	86904534	86904600	reg1017486.p1	3.943	+	NM_024945 TSC_hg19_v1_chr9_+_86595689 BC039999 BC020606 AK022950 BC044571 BC053549 BC032494	-308858	+	TSC_hg19_v1_chr9_-_86595531 BC014980 AK291336 X72727 NM_002140 NM_031262	-309028	-	TSC_hg19_v1_chr9_-_86595168 NM_031263	-309392	-	BC093821 BC093823 AK310861 AK304406 AK314039 AK292849 NM_001199633	51067	-	AF305210 NM_022127	78845	-	TSC_hg19_v1_chr9_+_87283453 BC075804 NM_001018064 NM_006180 AB209118	378894	+	NM_024945|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC039999|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC020606|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##AK022950|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC044571|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC053549|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC032494|RMI1|80010|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)##BC014980|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##AK291336|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##X72727|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_002140|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_031262|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##NM_031263|HNRNPK|3190|heterogeneous nuclear ribonucleoprotein K##BC093821|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##BC093823|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK310861|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK304406|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK314039|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AK292849|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##NM_001199633|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##AF305210|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##NM_022127|SLC28A3|64078|solute carrier family 28 (sodium-coupled nucleoside transporter), member 3##BC075804|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##NM_001018064|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##NM_006180|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2##AB209118|NTRK2|4915|neurotrophic tyrosine kinase, receptor, type 2	0.0	0.0	
chr12	93776395	93776554	reg1019766.p1	3.942	+	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	-4582	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-453376	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-453431	-	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	59212	-	TSC_hg19_v1_chr12_-_93835718 D83004	59244	-	TSC_hg19_v1_chr12_-_93835724 BC000396	59264	-	NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC000396|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.998462	0.0	
chr13	51209691	51209836	reg1013067.p1	3.942	+	AJ412041 AJ412042 AJ412043 TSC_hg19_v1_chr13_+_50760088	-449710	+	TSC_hg19_v1_chr13_-_50699781 AF380424	-509948	-	AJ412023 AJ412024 AJ412025 AJ412026 AJ412038 AJ412039 AJ412054 AJ412055 AJ412056 AJ412057 AJ412058 AJ412059 AJ412060 AJ412061 AJ412062 Y15227 TSC_hg19_v1_chr13_+_50656364 BC004131 AK312167 BC020692 AK095311	-553418	+	AY357595 BC104892 BC112009 NM_198989 AK303567 AK126830	208189	-	NM_001142279 NM_024570 TSC_hg19_v1_chr13_+_51483898	274093	+	TSC_hg19_v1_chr13_+_51483905 AY764036	274141	+	AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AJ412023|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412024|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412061|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412062|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##Y15227|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC020692|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AK095311|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AY357595|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC104892|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC112009|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_198989|DLEU7|220107|deleted in lymphocytic leukemia, 7##AK126830|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_001142279|RNASEH2B|79621|ribonuclease H2, subunit B##NM_024570|RNASEH2B|79621|ribonuclease H2, subunit B##AY764036|RNASEH2B|79621|ribonuclease H2, subunit B	0.288638	0.0	denovo_WM_7:-23:0.254
chr16	87877004	87877128	reg1009639.p2	3.942	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-77496	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-77551	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-240356	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	26009	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	93081	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	108102	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	1.995927	0.0	
chr19	4875977	4876071	reg1009303.p1	3.942	+	AK223054 AK312740 TSC_hg19_v1_chr19_-_4867712 AK291104 NM_001164189 NM_001164194 NM_005817	-8282	-	AF055574 TSC_hg19_v1_chr19_-_4867668 AK226088 AK225400 AK122671 BC005818 BC007566 BC019278 AF057140	-8359	-	TSC_hg19_v1_chr19_-_4867650 AK225045 BC001590	-8379	-	NM_001080523	26854	-	TSC_hg19_v1_chr19_+_4909512 AK307239 AK303361 NM_001048201 AK074377 AK314579	33475	+	TSC_hg19_v1_chr19_+_4910185 AK289389	34154	+	AK223054|PLIN3|10226|perilipin 3##AK312740|PLIN3|10226|perilipin 3##AK291104|PLIN3|10226|perilipin 3##NM_001164189|PLIN3|10226|perilipin 3##NM_001164194|PLIN3|10226|perilipin 3##NM_005817|PLIN3|10226|perilipin 3##AF055574|PLIN3|10226|perilipin 3##AK226088|PLIN3|10226|perilipin 3##AK225400|PLIN3|10226|perilipin 3##AK122671|PLIN3|10226|perilipin 3##BC005818|PLIN3|10226|perilipin 3##BC007566|PLIN3|10226|perilipin 3##BC019278|PLIN3|10226|perilipin 3##AF057140|PLIN3|10226|perilipin 3##AK225045|PLIN3|10226|perilipin 3##BC001590|PLIN3|10226|perilipin 3##NM_001080523|ARRDC5|645432|arrestin domain containing 5##AK307239|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK303361|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##NM_001048201|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK074377|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK314579|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1##AK289389|UHRF1|29128|ubiquitin-like with PHD and ring finger domains 1	0.993919	0.0	
chr1	114477555	114477733	reg1010531.p2	3.941	+	AB089957 TSC_hg19_v1_chr1_+_114472488	-5176	+	BC033012 NM_152696 NM_198268 AK122662	-5648	+	TSC_hg19_v1_chr1_+_114448038 AF306691 BC029687	-29600	+	BC028408 NM_198269	16122	+	BC036057 NM_181358	18854	+	AY358954 NM_020190 AY464015 AK092766 AX747716 AK075369 TSC_hg19_v1_chr1_+_114522099 AK297902 AF201945 AK223221 BC009920 AK222471 AK075479 AK075353 AK075544 AB590196 DQ892781 DQ896028 CU679529	44439	+	AB089957|HIPK1|204851|homeodomain interacting protein kinase 1##BC033012|HIPK1|204851|homeodomain interacting protein kinase 1##NM_152696|HIPK1|204851|homeodomain interacting protein kinase 1##NM_198268|HIPK1|204851|homeodomain interacting protein kinase 1##AK122662|HIPK1|204851|homeodomain interacting protein kinase 1##AF306691|DCLRE1B|64858|DNA cross-link repair 1B##BC029687|DCLRE1B|64858|DNA cross-link repair 1B##BC028408|HIPK1|204851|homeodomain interacting protein kinase 1##NM_198269|HIPK1|204851|homeodomain interacting protein kinase 1##BC036057|HIPK1|204851|homeodomain interacting protein kinase 1##NM_181358|HIPK1|204851|homeodomain interacting protein kinase 1##AY358954|OLFML3|56944|olfactomedin-like 3##NM_020190|OLFML3|56944|olfactomedin-like 3##AY464015|OLFML3|56944|olfactomedin-like 3##AK092766|OLFML3|56944|olfactomedin-like 3##AK075369|OLFML3|56944|olfactomedin-like 3##AK297902|OLFML3|56944|olfactomedin-like 3##AF201945|OLFML3|56944|olfactomedin-like 3##AK223221|OLFML3|56944|olfactomedin-like 3##BC009920|OLFML3|56944|olfactomedin-like 3##AK222471|OLFML3|56944|olfactomedin-like 3##AK075479|OLFML3|56944|olfactomedin-like 3##AK075353|OLFML3|56944|olfactomedin-like 3##AK075544|OLFML3|56944|olfactomedin-like 3##DQ892781|OLFML3|56944|olfactomedin-like 3##DQ896028|OLFML3|56944|olfactomedin-like 3	1.989108	0.0	denovo_WM_7:1:0.633	denovo_WM_7:2:0.364
chr12	852505	852679	reg1015993.p1	3.941	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-79877	-	TSC_hg19_v1_chr12_-_752800 AK298043	-99773	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-100414	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	9564	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	10164	+	BC013629 TSC_hg19_v1_chr12_+_1017145	164490	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	0.073871	0.0	
chr14	25299198	25299313	reg1016722.p1	3.941	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-195837	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-220394	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-253809	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	219983	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1767733	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3936973	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.0	0.0	
chr18	22124152	22124253	reg1013996.p2	3.941	+	AF312230 BC069136 NM_001143828 NM_001160166 NM_021624 AB045370 BC112348 AB044934 AF307973 AF325356 AF329449 AJ298292 AY008280 AY136745 DQ835186 DQ835187	-83560	+	TSC_hg19_v1_chr18_+_22006671 AK312727 BC034016 AB026264 AB587563 CU689806 DQ893141 EU176771 AF208694	-117537	+	TSC_hg19_v1_chr18_+_22006608 AK292533 NM_018439 BC036074	-117595	+	TSC_hg19_v1_chr18_-_22931121 AB385259	806946	-	TSC_hg19_v1_chr18_-_22932105 BC113622 BC113648 BC143727	807835	-	AJ518106 BC032869 TSC_hg19_v1_chr18_-_22932114 AK027354 AK293067 NM_015461	807961	-	AF312230|HRH4|59340|histamine receptor H4##BC069136|HRH4|59340|histamine receptor H4##NM_001143828|HRH4|59340|histamine receptor H4##NM_001160166|HRH4|59340|histamine receptor H4##NM_021624|HRH4|59340|histamine receptor H4##AB045370|HRH4|59340|histamine receptor H4##BC112348|HRH4|59340|histamine receptor H4##AB044934|HRH4|59340|histamine receptor H4##AF307973|HRH4|59340|histamine receptor H4##AF325356|HRH4|59340|histamine receptor H4##AF329449|HRH4|59340|histamine receptor H4##AJ298292|HRH4|59340|histamine receptor H4##AY008280|HRH4|59340|histamine receptor H4##AY136745|HRH4|59340|histamine receptor H4##DQ835186|HRH4|59340|histamine receptor H4##DQ835187|HRH4|59340|histamine receptor H4##AK312727|IMPACT|55364|Impact homolog (mouse)##BC034016|IMPACT|55364|Impact homolog (mouse)##AB026264|IMPACT|55364|Impact homolog (mouse)##DQ893141|IMPACT|55364|Impact homolog (mouse)##EU176771|IMPACT|55364|Impact homolog (mouse)##AF208694|IMPACT|55364|Impact homolog (mouse)##AK292533|IMPACT|55364|Impact homolog (mouse)##NM_018439|IMPACT|55364|Impact homolog (mouse)##BC036074|IMPACT|55364|Impact homolog (mouse)##BC113622|ZNF521|25925|zinc finger protein 521##BC113648|ZNF521|25925|zinc finger protein 521##BC143727|ZNF521|25925|zinc finger protein 521##AJ518106|ZNF521|25925|zinc finger protein 521##BC032869|ZNF521|25925|zinc finger protein 521##AK027354|ZNF521|25925|zinc finger protein 521##AK293067|ZNF521|25925|zinc finger protein 521##NM_015461|ZNF521|25925|zinc finger protein 521	0.998197	0.364127	CTCF.p2:9:0.364	denovo_WM_7:-35:0.231	denovo_WM_7:-36:0.753
chr19	39046057	39046172	reg1017552.p1	3.941	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-121770	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-129242	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-152213	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	62474	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	63599	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	63702	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.99496	0.0	
chr3	78775039	78775189	reg1014682.p1	3.941	+	TSC_hg19_v1_chr3_-_78666943 AK025535	-108129	-	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	-1685834	+	TSC_hg19_v1_chr3_-_75834698 AK123776	-2940412	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	293473	-	NM_002941	1041944	-	TSC_hg19_v1_chr3_-_81810692 EU176342 L07956	3035583	-	AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##AK123776|ZNF717|100131827|zinc finger protein 717##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##EU176342|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##L07956|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1	0.999363	0.0	denovo_WM_7:-21:0.740	denovo_WM_7:-22:0.227
chr6	42017930	42018047	reg1003893.p1	3.941	+	NM_001136017 NM_001136126	-1379	-	TSC_hg19_v1_chr6_-_42016453 AK303452 AB209825 AK057206 AK097856	-1570	-	AB385206 CR542246 DQ891748 DQ895130 BC011616 M90814 TSC_hg19_v1_chr6_-_41909544 AK315421 AK299187 M92287 NM_001136125 NM_001760	-108489	-	BC033728 NM_138572 TSC_hg19_v1_chr6_+_42018261 AK057383 BC119678 BC119679 AL833401	268	+	TSC_hg19_v1_chr6_+_42018268 BC018796 AF465841 CU689710	283	+	NM_001164446	92726	-	NM_001136017|CCND3|896|cyclin D3##NM_001136126|CCND3|896|cyclin D3##AK303452|CCND3|896|cyclin D3##AB209825|CCND3|896|cyclin D3##AK057206|CCND3|896|cyclin D3##AK097856|CCND3|896|cyclin D3##CR542246|CCND3|896|cyclin D3##DQ891748|CCND3|896|cyclin D3##DQ895130|CCND3|896|cyclin D3##BC011616|CCND3|896|cyclin D3##M90814|CCND3|896|cyclin D3##AK315421|CCND3|896|cyclin D3##AK299187|CCND3|896|cyclin D3##M92287|CCND3|896|cyclin D3##NM_001136125|CCND3|896|cyclin D3##NM_001760|CCND3|896|cyclin D3##BC033728|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##NM_138572|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AK057383|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119678|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC119679|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AL833401|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##BC018796|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##AF465841|TAF8|129685|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa##NM_001164446|C6orf132|647024|chromosome 6 open reading frame 132	0.0	0.0	
chr1	179796037	179796155	reg1016350.p1	3.940	+	AK313887 TSC_hg19_v1_chr1_+_179712524	-83580	+	TSC_hg19_v1_chr1_+_179712425 AK310711	-83672	+	AY902195 BC009382 NM_173509 TSC_hg19_v1_chr1_+_179712397	-83745	+	TSC_hg19_v1_chr1_-_179833583 AK021454	37488	-	BC065285 TSC_hg19_v1_chr1_-_179846939 AK057623 AK289793 BC024226 AF464140 BC094724 NM_001199260 NM_022347 NM_145034	50832	-	AK001780 TSC_hg19_v1_chr1_+_179851431 NM_015602	55387	+	AK313887|FAM163A|148753|family with sequence similarity 163, member A##AK310711|FAM163A|148753|family with sequence similarity 163, member A##AY902195|FAM163A|148753|family with sequence similarity 163, member A##BC009382|FAM163A|148753|family with sequence similarity 163, member A##NM_173509|FAM163A|148753|family with sequence similarity 163, member A##AK057623|TOR1AIP2|163590|torsin A interacting protein 2##AK289793|TOR1AIP2|163590|torsin A interacting protein 2##AF464140|TOR1AIP2|163590|torsin A interacting protein 2##BC094724|TOR1AIP2|163590|torsin A interacting protein 2##NM_001199260|TOR1AIP2|163590|torsin A interacting protein 2##NM_022347|TOR1AIP2|163590|torsin A interacting protein 2##NM_145034|TOR1AIP2|163590|torsin A interacting protein 2##AK001780|TOR1AIP1|26092|torsin A interacting protein 1##NM_015602|TOR1AIP1|26092|torsin A interacting protein 1	0.99335	0.0	denovo_WM_7:3:0.880
chr14	23282093	23282220	reg1007344.p3	3.940	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-46311	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-214967	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-224022	-	TSC_hg19_v1_chr14_-_23284568 AK025377	2423	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	2476	-	AB020532 BX161519 NM_001126105	2902	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.0	0.0	
chr17	45285166	45285271	reg1012379.p2	3.940	+	NM_001114091 NM_001256 TSC_hg19_v1_chr17_-_45266669	-18534	-	TSC_hg19_v1_chr17_-_45266641 AK299342	-18579	-	CU679998 AB384784 DQ892780 DQ896027 BC011656 DQ786193 TSC_hg19_v1_chr17_-_45266619 U00001 AK296881 S78234	-18640	-	NM_001002841 X52005	1232	+	NM_002476 TSC_hg19_v1_chr17_+_45286713 BC030228 M24121 M36172 X13955 AB528188 AM392523 AM392536 AM392902 AM393643 AM393677	1532	+	TSC_hg19_v1_chr17_+_45331192 BC127666 BC127667 J02703 NM_000212 M35999 M20311	45966	+	NM_001114091|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001256|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK299342|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ892780|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ896027|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##BC011656|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##DQ786193|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##U00001|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##AK296881|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##S78234|CDC27|996|cell division cycle 27 homolog (S. cerevisiae)##NM_001002841|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X52005|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##NM_002476|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC030228|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M24121|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##M36172|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##X13955|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392523|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392536|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM392902|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393643|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##AM393677|MYL4|4635|myosin, light chain 4, alkali; atrial, embryonic##BC127666|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##BC127667|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##J02703|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##NM_000212|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M35999|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)##M20311|ITGB3|3690|integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)	0.399942	0.0	denovo_WM_7:-19:0.400
chr17	76729151	76729284	reg1013712.p1	3.940	+	TSC_hg19_v1_chr17_-_76719676 AK293894	-9466	-	AK316277 TSC_hg19_v1_chr17_-_76719649	-9570	-	NM_173628	-155742	-	TSC_hg19_v1_chr17_-_76732958 AK311535	3781	-	AB590939 EU832306 EU832390 BC050452 BC038385 TSC_hg19_v1_chr17_-_76778380 AK296914 AK307917 M85169 NM_004762 NM_017456	49136	-	BC071582 TSC_hg19_v1_chr17_-_76836610	107433	-	AK293894|CYTH1|9267|cytohesin 1##AK316277|CYTH1|9267|cytohesin 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##EU832306|CYTH1|9267|cytohesin 1##EU832390|CYTH1|9267|cytohesin 1##BC050452|CYTH1|9267|cytohesin 1##BC038385|CYTH1|9267|cytohesin 1##AK296914|CYTH1|9267|cytohesin 1##AK307917|CYTH1|9267|cytohesin 1##M85169|CYTH1|9267|cytohesin 1##NM_004762|CYTH1|9267|cytohesin 1##NM_017456|CYTH1|9267|cytohesin 1##BC071582|USP36|57602|ubiquitin specific peptidase 36	1.987646	0.0	denovo_WM_7:-34:0.266	denovo_WM_7:-35:0.717	denovo_WM_7:-50:0.853
chr9	131549053	131549136	reg1014403.p1	3.940	+	TSC_hg19_v1_chr9_-_131534207 BC052563 NM_006336	-14836	-	TSC_hg19_v1_chr9_-_131534148 AK314911 BC033884	-15077	-	CU690564 BC009280 BC048251 TSC_hg19_v1_chr9_-_131486407 AK027430 AK075332 AK315746 AK092843 AX747760 NM_032799	-62705	-	NM_018201 TSC_hg19_v1_chr9_+_131549531	426	+	TSC_hg19_v1_chr9_+_131549578 AK289777 BC150311 AK123828 BC014898 BC132817 BC136509 AK001605 BC140080 BC143010 HQ258408 AB449899	502	+	TSC_hg19_v1_chr9_+_131580758 BC016351 NM_004435 X79444 BC004922 AB590755	31745	+	BC052563|ZER1|10444|zer-1 homolog (C. elegans)##NM_006336|ZER1|10444|zer-1 homolog (C. elegans)##AK314911|ZER1|10444|zer-1 homolog (C. elegans)##BC033884|ZER1|10444|zer-1 homolog (C. elegans)##BC009280|ZDHHC12|84885|zinc finger, DHHC-type containing 12##BC048251|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK027430|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK075332|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK315746|ZDHHC12|84885|zinc finger, DHHC-type containing 12##AK092843|ZDHHC12|84885|zinc finger, DHHC-type containing 12##NM_032799|ZDHHC12|84885|zinc finger, DHHC-type containing 12##NM_018201|TBC1D13|54662|TBC1 domain family, member 13##AK289777|TBC1D13|54662|TBC1 domain family, member 13##BC150311|TBC1D13|54662|TBC1 domain family, member 13##AK123828|TBC1D13|54662|TBC1 domain family, member 13##BC014898|TBC1D13|54662|TBC1 domain family, member 13##BC132817|TBC1D13|54662|TBC1 domain family, member 13##BC136509|TBC1D13|54662|TBC1 domain family, member 13##AK001605|TBC1D13|54662|TBC1 domain family, member 13##BC140080|TBC1D13|54662|TBC1 domain family, member 13##BC143010|TBC1D13|54662|TBC1 domain family, member 13##HQ258408|TBC1D13|54662|TBC1 domain family, member 13##AB449899|TBC1D13|54662|TBC1 domain family, member 13##BC016351|ENDOG|2021|endonuclease G##NM_004435|ENDOG|2021|endonuclease G##X79444|ENDOG|2021|endonuclease G##BC004922|ENDOG|2021|endonuclease G	1.143271	0.0	denovo_WM_7:-51:0.905
chrX	118812480	118812643	reg1016962.p1	3.940	+	BC047878 BC068514 BC040379 AY208891 NM_001173487 NM_017544	-72733	-	EF165090 EF165091 EF165093 AJ011812 EF158333 EF216688 EF216689 NM_001173488	-85579	-	BC042021 NM_181777	-98264	+	D50918 AB384441 CU679289 CU680116 CU690318 TSC_hg19_v1_chrX_-_118827108 BC069231	14524	-	BC009291 AK303116 BC011922 TSC_hg19_v1_chrX_-_118827123 AK026589	14571	-	TSC_hg19_v1_chrX_-_118827155 BC036240 AK299273 AF397023	14618	-	BC047878|NKRF|55922|NFKB repressing factor##BC068514|NKRF|55922|NFKB repressing factor##BC040379|NKRF|55922|NFKB repressing factor##AY208891|NKRF|55922|NFKB repressing factor##NM_001173487|NKRF|55922|NFKB repressing factor##NM_017544|NKRF|55922|NFKB repressing factor##EF165090|NKRF|55922|NFKB repressing factor##EF165091|NKRF|55922|NFKB repressing factor##EF165093|NKRF|55922|NFKB repressing factor##AJ011812|NKRF|55922|NFKB repressing factor##EF158333|NKRF|55922|NFKB repressing factor##EF216688|NKRF|55922|NFKB repressing factor##EF216689|NKRF|55922|NFKB repressing factor##NM_001173488|NKRF|55922|NFKB repressing factor##BC042021|UBE2A|7319|ubiquitin-conjugating enzyme E2A##NM_181777|UBE2A|7319|ubiquitin-conjugating enzyme E2A##D50918|SEPT6|23157|septin 6##BC069231|SEPT6|23157|septin 6##BC009291|SEPT6|23157|septin 6##AK303116|SEPT6|23157|septin 6##BC011922|SEPT6|23157|septin 6##AK026589|SEPT6|23157|septin 6##BC036240|SEPT6|23157|septin 6##AK299273|SEPT6|23157|septin 6##AF397023|SEPT6|23157|septin 6	0.987345	0.0	denovo_WM_7:-70:0.686
chr10	24666936	24667037	reg1012220.p1	3.939	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-168892	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-169198	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-683309	+	TSC_hg19_v1_chr10_+_24755441 AK300422	88458	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	88483	+	AK307604 TSC_hg19_v1_chr10_-_25012174	345187	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	0.801936	0.0	denovo_WM_7:19:0.703
chr1	200347237	200347417	reg1009938.p1	3.939	+	NM_001105517	-164672	+	AK316513 TSC_hg19_v1_chr1_+_200011716	-335603	+	U93553 AF146343 NM_003822 NM_205860 BC027893 AB019246 BC118571 BC118652 U80251 AB590580 AF124247 HQ692857 AF124248	-350458	+	AK021707 TSC_hg19_v1_chr1_-_200377270	29942	-	TSC_hg19_v1_chr1_-_200377488 AK022921	30211	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	31582	-	NM_001105517|FAM58BP|339521|family with sequence similarity 58, member B, pseudogene##AK316513|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U93553|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF146343|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_003822|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##NM_205860|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC027893|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AB019246|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118571|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##BC118652|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##U80251|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AF124247|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##HQ692857|NR5A2|2494|nuclear receptor subfamily 5, group A, member 2##AK021707|ZNF281|23528|zinc finger protein 281##AK022921|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281	0.321313	0.0	denovo_WM_7:-84:0.201
chr16	29638010	29638190	reg1013685.p1	3.939	+	AB040413 AB055226 TSC_hg19_v1_chr16_-_29625045	-13058	-	TSC_hg19_v1_chr16_-_29606667 AK316536	-31427	-	CU687812 AK304513 TSC_hg19_v1_chr16_-_29606405	-31755	-	TSC_hg19_v1_chr16_+_29674283 NM_001030288 X60502 BC012350	36232	+	TSC_hg19_v1_chr16_+_29674567 AK292626 AK313750	36465	+	TSC_hg19_v1_chr16_+_29674568 J04168 J04536 NM_003123	36473	+	AK304513|LOC440354|440354|smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) pseudogene##NM_001030288|SPN|6693|sialophorin##X60502|SPN|6693|sialophorin##BC012350|SPN|6693|sialophorin##AK292626|SPN|6693|sialophorin##AK313750|SPN|6693|sialophorin##J04536|SPN|6693|sialophorin##NM_003123|SPN|6693|sialophorin	0.0	0.0	
chr16	3145992	3146115	reg1011887.p2	3.939	+	BC114452 AK027455 NM_032805	-3204	-	BC105602 TSC_hg19_v1_chr16_+_3115641 BC018782 NM_001012632 M59807 NM_001012636 AB590933 EU339107 JN546102	-30327	+	AK296143 AK310053 TSC_hg19_v1_chr16_+_3115639	-30414	+	TSC_hg19_v1_chr16_-_3149286 AK074736	3229	-	TSC_hg19_v1_chr16_+_3162586 NM_001042428 NM_003456 AK313009 AF060865 BC002810	16542	+	TSC_hg19_v1_chr16_-_3184862 AF098968	38818	-	BC114452|ZSCAN10|84891|zinc finger and SCAN domain containing 10##AK027455|ZSCAN10|84891|zinc finger and SCAN domain containing 10##NM_032805|ZSCAN10|84891|zinc finger and SCAN domain containing 10##BC105602|IL32|9235|interleukin 32##BC018782|IL32|9235|interleukin 32##NM_001012632|IL32|9235|interleukin 32##M59807|IL32|9235|interleukin 32##NM_001012636|IL32|9235|interleukin 32##EU339107|IL32|9235|interleukin 32##AK296143|IL32|9235|interleukin 32##AK310053|IL32|9235|interleukin 32##AK074736|ZSCAN10|84891|zinc finger and SCAN domain containing 10##NM_001042428|ZNF205|7755|zinc finger protein 205##NM_003456|ZNF205|7755|zinc finger protein 205##AK313009|ZNF205|7755|zinc finger protein 205##AF060865|ZNF205|7755|zinc finger protein 205##BC002810|ZNF205|7755|zinc finger protein 205	0.442103	0.950542	CTCF.p2:-13:0.951	denovo_WM_7:-47:0.284
chr19	40942178	40942358	reg1013486.p1	3.939	+	BC002670 AF366402 AF117959 AK222970 AK223011 TSC_hg19_v1_chr19_-_40931900 AK074652 NM_013376	-10363	-	AF321191 AF321192 NM_020956 NM_181882 BC067266	-22997	-	AK302301 AK301713 AK292228 BC034501 NM_144685 AK057380	-46181	-	AF192529 NM_013368	6236	-	TSC_hg19_v1_chr19_-_40950200 BC014061 AK074604	7943	-	TSC_hg19_v1_chr19_-_40950243 BC050643 NM_203344	7991	-	BC002670|SERTAD1|29950|SERTA domain containing 1##AF366402|SERTAD1|29950|SERTA domain containing 1##AF117959|SERTAD1|29950|SERTA domain containing 1##AK222970|SERTAD1|29950|SERTA domain containing 1##AK223011|SERTAD1|29950|SERTA domain containing 1##AK074652|SERTAD1|29950|SERTA domain containing 1##NM_013376|SERTAD1|29950|SERTA domain containing 1##AF321191|PRX|57716|periaxin##AF321192|PRX|57716|periaxin##NM_020956|PRX|57716|periaxin##NM_181882|PRX|57716|periaxin##BC067266|PRX|57716|periaxin##AK302301|HIPK4|147746|homeodomain interacting protein kinase 4##AK301713|HIPK4|147746|homeodomain interacting protein kinase 4##AK292228|HIPK4|147746|homeodomain interacting protein kinase 4##BC034501|HIPK4|147746|homeodomain interacting protein kinase 4##NM_144685|HIPK4|147746|homeodomain interacting protein kinase 4##AK057380|HIPK4|147746|homeodomain interacting protein kinase 4##AF192529|SERTAD3|29946|SERTA domain containing 3##NM_013368|SERTAD3|29946|SERTA domain containing 3##BC014061|SERTAD3|29946|SERTA domain containing 3##AK074604|SERTAD3|29946|SERTA domain containing 3##BC050643|SERTAD3|29946|SERTA domain containing 3##NM_203344|SERTAD3|29946|SERTA domain containing 3	0.0	0.0	
chr2	238581811	238581919	reg1010274.p1	3.939	+	TSC_hg19_v1_chr2_+_238536229 NM_001137550 AF115510	-45506	+	BC023661 AK225423 AK022600 NM_022449	-82125	-	TSC_hg19_v1_chr2_-_238499327 BC009827 BC050426 AL136645	-82519	-	TSC_hg19_v1_chr2_+_238600798 BC018883 BC019335 NM_001137551 NM_001137552 NM_001137553 NM_004735	18942	+	TSC_hg19_v1_chr2_+_238600975 AJ223075 BC001385 AK298270 U69609 BC108913 BC108914 AK307485	19078	+	TSC_hg19_v1_chr2_+_238601052 EU832771 EU832772 GQ129315 GQ129316	19210	+	NM_001137550|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AF115510|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC023661|RAB17|64284|RAB17, member RAS oncogene family##AK225423|RAB17|64284|RAB17, member RAS oncogene family##AK022600|RAB17|64284|RAB17, member RAS oncogene family##NM_022449|RAB17|64284|RAB17, member RAS oncogene family##BC009827|RAB17|64284|RAB17, member RAS oncogene family##BC050426|RAB17|64284|RAB17, member RAS oncogene family##AL136645|RAB17|64284|RAB17, member RAS oncogene family##BC018883|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC019335|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137551|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137552|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_001137553|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##NM_004735|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AJ223075|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC001385|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK298270|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##U69609|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108913|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##BC108914|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##AK307485|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832771|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##EU832772|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129315|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1##GQ129316|LRRFIP1|9208|leucine rich repeat (in FLII) interacting protein 1	0.83709	0.083645	denovo_WM_7:-34:0.337	denovo_WM_7:-36:0.354
chr7	127406887	127406982	reg1010461.p1	3.939	+	BC017180 TSC_hg19_v1_chr7_+_127292247 AK096583 AK304181 AK312313 AB209510 AB384959 DQ893632 DQ895529 BT009785	-114598	+	TSC_hg19_v1_chr7_+_127292236 AY273894 U22055	-114698	+	TSC_hg19_v1_chr7_+_127292198 NM_014390	-114752	+	BC111561 BC111745 AF196976 AJ297858 NM_022143 AK172751 TSC_hg19_v1_chr7_-_127671066 AK314047	264102	-	NM_000230 U43653 TSC_hg19_v1_chr7_+_127881332 AK313553 BC060830 BC069323 BC069452 BC069527	474399	+	CU680694 TSC_hg19_v1_chr7_-_127983862	576920	-	BC017180|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK096583|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK304181|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AK312313|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AB209510|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ893632|SND1|27044|staphylococcal nuclease and tudor domain containing 1##DQ895529|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BT009785|SND1|27044|staphylococcal nuclease and tudor domain containing 1##AY273894|SND1|27044|staphylococcal nuclease and tudor domain containing 1##U22055|SND1|27044|staphylococcal nuclease and tudor domain containing 1##NM_014390|SND1|27044|staphylococcal nuclease and tudor domain containing 1##BC111561|LRRC4|64101|leucine rich repeat containing 4##BC111745|LRRC4|64101|leucine rich repeat containing 4##AF196976|LRRC4|64101|leucine rich repeat containing 4##AJ297858|LRRC4|64101|leucine rich repeat containing 4##NM_022143|LRRC4|64101|leucine rich repeat containing 4##AK172751|LRRC4|64101|leucine rich repeat containing 4##AK314047|LRRC4|64101|leucine rich repeat containing 4##NM_000230|LEP|3952|leptin##U43653|LEP|3952|leptin##AK313553|LEP|3952|leptin##BC060830|LEP|3952|leptin##BC069323|LEP|3952|leptin##BC069452|LEP|3952|leptin##BC069527|LEP|3952|leptin	2.038499	0.0	denovo_WM_7:-85:0.947	denovo_WM_7:-100:0.968
chr7	69065480	69065603	reg1010853.p2	3.939	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-953	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-1212	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-1705	+	TSC_hg19_v1_chr7_+_70231164 AK296981	1165664	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1532247	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2736237	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.992224	0.0	
chr8	38733980	38734092	reg1019337.p1	3.939	+	TSC_hg19_v1_chr8_+_38644754 AF049910 AY177411	-89268	+	AK314620 NM_001122824 NM_006283 TSC_hg19_v1_chr8_+_38644722	-89314	+	AY072874 AY072875 TSC_hg19_v1_chr8_+_38614814 AK308849	-119250	+	AK098787 NM_021623 TSC_hg19_v1_chr8_+_38758793 AK296068 AK291842 AF286164	24775	+	NM_153692 AK075205 BC057765 AK300197	97673	+	AL834224 BC004878 BC109050 BC109049 AF353991 AK075027 TSC_hg19_v1_chr8_-_38854016 AK225093	119976	-	AF049910|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AY177411|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AK314620|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_001122824|TACC1|6867|transforming, acidic coiled-coil containing protein 1##NM_006283|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AY072874|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AY072875|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AK308849|TACC1|6867|transforming, acidic coiled-coil containing protein 1##AK098787|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##NM_021623|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AK296068|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AK291842|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##AF286164|PLEKHA2|59339|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2##NM_153692|HTRA4|203100|HtrA serine peptidase 4##AK075205|HTRA4|203100|HtrA serine peptidase 4##BC057765|HTRA4|203100|HtrA serine peptidase 4##AK300197|HTRA4|203100|HtrA serine peptidase 4##AL834224|TM2D2|83877|TM2 domain containing 2##BC004878|TM2D2|83877|TM2 domain containing 2##BC109050|TM2D2|83877|TM2 domain containing 2##BC109049|TM2D2|83877|TM2 domain containing 2##AF353991|TM2D2|83877|TM2 domain containing 2##AK075027|TM2D2|83877|TM2 domain containing 2##AK225093|TM2D2|83877|TM2 domain containing 2	0.993919	0.0	denovo_WM_7:-58:0.858
chr10	112603191	112603310	reg1010254.p2	3.938	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	-199121	+	AF067163 TSC_hg19_v1_chr10_+_112344155	-259135	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-275758	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	28362	+	AK315295 TSC_hg19_v1_chr10_+_112631685 AK223623 AK296753 BC026104 BC031049 BC015036 U96628	28464	+	TSC_hg19_v1_chr10_-_112678704 AK307126 NM_001195306	75446	-	EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##AF067163|SMC3|9126|structural maintenance of chromosomes 3##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK315295|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK223623|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK296753|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC026104|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC031049|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##BC015036|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##U96628|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK307126|BBIP1|92482|BBSome interacting protein 1##NM_001195306|BBIP1|92482|BBSome interacting protein 1	0.988595	0.0	denovo_WM_7:1:0.370	denovo_WM_7:3:0.372
chr12	12849442	12849622	reg1000618.p2	3.938	+	AK096388 NM_006143	-412	-	TSC_hg19_v1_chr12_+_12764861 BC104873 BC112157	-84649	+	TSC_hg19_v1_chr12_+_12764831 BC106052 AF039081 NM_001310 AK307202	-84737	+	TSC_hg19_v1_chr12_+_12870308 AK312461 NM_004064 BC001971 AK298335	20594	+	TSC_hg19_v1_chr12_+_12878853 NM_001130415 AK127712 BC042478 AM393383	29324	+	BC126433 BC126435 NM_030817 TSC_hg19_v1_chr12_+_12938594 AK057867 AK225176 AK314392 AL136783	89045	+	AK096388|GPR19|2842|G protein-coupled receptor 19##NM_006143|GPR19|2842|G protein-coupled receptor 19##BC104873|CREBL2|1389|cAMP responsive element binding protein-like 2##BC112157|CREBL2|1389|cAMP responsive element binding protein-like 2##BC106052|CREBL2|1389|cAMP responsive element binding protein-like 2##AF039081|CREBL2|1389|cAMP responsive element binding protein-like 2##NM_001310|CREBL2|1389|cAMP responsive element binding protein-like 2##AK307202|CREBL2|1389|cAMP responsive element binding protein-like 2##AK312461|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_004064|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##BC001971|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##AK298335|CDKN1B|1027|cyclin-dependent kinase inhibitor 1B (p27, Kip1)##NM_001130415|APOLD1|81575|apolipoprotein L domain containing 1##BC042478|APOLD1|81575|apolipoprotein L domain containing 1##AM393383|APOLD1|81575|apolipoprotein L domain containing 1##BC126433|APOLD1|81575|apolipoprotein L domain containing 1##BC126435|APOLD1|81575|apolipoprotein L domain containing 1##NM_030817|APOLD1|81575|apolipoprotein L domain containing 1##AK225176|APOLD1|81575|apolipoprotein L domain containing 1##AK314392|APOLD1|81575|apolipoprotein L domain containing 1##AL136783|APOLD1|81575|apolipoprotein L domain containing 1	0.032852	0.0	
chr12	57737476	57737588	reg1008949.p1	3.938	+	NM_014925	-33287	-	AB384552 TSC_hg19_v1_chr12_-_57693218	-44350	-	TSC_hg19_v1_chr12_-_57674254 X85326	-63255	-	AB023219 AX775761 AX775763 TSC_hg19_v1_chr12_-_57824797	87280	-	TSC_hg19_v1_chr12_+_57828511 AK314849 BC020693 NM_005538 X82540 BC130324 BC130326 AB590801	91031	+	TSC_hg19_v1_chr12_+_57849089 NM_031479 AK075285 BC005161 AF412024	111566	+	NM_014925|R3HDM2|22864|R3H domain containing 2##AB023219|R3HDM2|22864|R3H domain containing 2##AX775761|R3HDM2|22864|R3H domain containing 2##AX775763|R3HDM2|22864|R3H domain containing 2##AK314849|INHBC|3626|inhibin, beta C##BC020693|INHBC|3626|inhibin, beta C##NM_005538|INHBC|3626|inhibin, beta C##BC130324|INHBC|3626|inhibin, beta C##BC130326|INHBC|3626|inhibin, beta C##NM_031479|INHBE|83729|inhibin, beta E##AK075285|INHBE|83729|inhibin, beta E##BC005161|INHBE|83729|inhibin, beta E##AF412024|INHBE|83729|inhibin, beta E	0.996136	0.0	
chr14	72980775	72980841	reg1012141.p1	3.938	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-580942	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-581655	+	AK294895 NM_001204423	-581992	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	380000	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	412327	+	AK098542 AF311602 NM_178441	472849	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.0	0.0	
chr19	39940223	39940337	reg1014976.p2	3.938	+	TSC_hg19_v1_chr19_+_39936289 NM_003169 AF040253	-3977	+	TSC_hg19_v1_chr19_+_39936253 BC024203 AB209257	-4019	+	TSC_hg19_v1_chr19_+_39936247 U56402	-4035	+	NM_001001563 BC121146 BC121147	30807	+	TSC_hg19_v1_chr19_+_39971479 BC050082	31186	+	TSC_hg19_v1_chr19_+_39971488 AY551341	31210	+	NM_003169|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AF040253|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##BC024203|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##AB209257|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##U56402|SUPT5H|6829|suppressor of Ty 5 homolog (S. cerevisiae)##NM_001001563|TIMM50|92609|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)##BC121146|TIMM50|92609|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)##BC121147|TIMM50|92609|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)##BC050082|TIMM50|92609|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)##AY551341|TIMM50|92609|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)	0.976445	0.0	denovo_WM_7:12:0.397
chr20	6746262	6746355	reg1017894.p1	3.938	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-642145	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-642431	-	TSC_hg19_v1_chr20_-_6103678 AK314394 BC040545 AF443278	-642634	-	BC069214 NM_001200	2436	+	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1174794	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1253992	-	AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AK314394|FERMT1|55612|fermitin family member 1##BC040545|FERMT1|55612|fermitin family member 1##AF443278|FERMT1|55612|fermitin family member 1##BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4	0.996684	0.987779	CTCF.p2:-5:0.988	denovo_WM_7:16:0.585	denovo_WM_7:17:0.339
chr2	16838461	16838599	reg1013077.p1	3.938	+	TSC_hg19_v1_chr2_+_16082162 AB464743 BT007384	-756363	+	TSC_hg19_v1_chr2_+_16081955 BC002712	-756535	+	BC002892 TSC_hg19_v1_chr2_-_16081802 S49953	-756757	-	TSC_hg19_v1_chr2_-_16847097 BC038971 AL136704 AK055334 NM_030797	8614	-	DQ860102 NM_001099218	861175	-	NM_003385 AK308816 TSC_hg19_v1_chr2_+_17721960 BC022012	883357	+	BT007384|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002712|MYCN|4613|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)##BC002892|MYCNOS|10408|MYCN opposite strand/antisense RNA (non-protein coding)##S49953|MYCNOS|10408|MYCN opposite strand/antisense RNA (non-protein coding)##BC038971|FAM49A|81553|family with sequence similarity 49, member A##AL136704|FAM49A|81553|family with sequence similarity 49, member A##AK055334|FAM49A|81553|family with sequence similarity 49, member A##NM_030797|FAM49A|81553|family with sequence similarity 49, member A##DQ860102|RAD51AP2|729475|RAD51 associated protein 2##NM_001099218|RAD51AP2|729475|RAD51 associated protein 2##NM_003385|VSNL1|7447|visinin-like 1##AK308816|VSNL1|7447|visinin-like 1##BC022012|VSNL1|7447|visinin-like 1	0.0	0.0	
chr22	23529423	23529551	reg1012016.p1	3.938	+	TSC_hg19_v1_chr22_+_23523013 X06418 EU216058 EU216059 EU216061 EU216062 EU216063 EU216064 EU216065 EU216067 EU216068 EU216069 EU216070 EU216072	-6438	+	TSC_hg19_v1_chr22_+_23522745 AB209991	-6687	+	TSC_hg19_v1_chr22_+_23522713 BC066122	-6774	+	TSC_hg19_v1_chr22_+_23540316 X14677 X14675	10918	+	TSC_hg19_v1_chr22_-_23744738 AK056130 AK092581 AX747609 AK092530 AX747585	215256	-	AB528384 DQ893578 DQ894640 BC030239 BC012293 M27749 NM_020070 NM_152855	392948	-	X06418|BCR|613|breakpoint cluster region##EU216058|BCR|613|breakpoint cluster region##EU216059|BCR|613|breakpoint cluster region##EU216061|BCR|613|breakpoint cluster region##EU216062|BCR|613|breakpoint cluster region##EU216063|BCR|613|breakpoint cluster region##EU216064|BCR|613|breakpoint cluster region##EU216067|BCR|613|breakpoint cluster region##EU216069|BCR|613|breakpoint cluster region##EU216070|BCR|613|breakpoint cluster region##AB209991|BCR|613|breakpoint cluster region##BC066122|BCR|613|breakpoint cluster region##AK056130|ZDHHC8P1|150244|zinc finger, DHHC-type containing 8 pseudogene 1##AK092581|ZDHHC8P1|150244|zinc finger, DHHC-type containing 8 pseudogene 1##AK092530|ZDHHC8P1|150244|zinc finger, DHHC-type containing 8 pseudogene 1##DQ893578|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##DQ894640|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##BC030239|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##BC012293|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##M27749|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##NM_020070|IGLL1|3543|immunoglobulin lambda-like polypeptide 1##NM_152855|IGLL1|3543|immunoglobulin lambda-like polypeptide 1	0.999255	0.0	
chr22	29598976	29599127	reg1014591.p2	3.938	+	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	-130029	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	-141202	-	TSC_hg19_v1_chr22_+_29449893 BC042614	-149126	+	TSC_hg19_v1_chr22_+_29601914 BC046358 NM_133455 CR456407 CU012965 CU013253 AB463024 AJ416090	2841	+	TSC_hg19_v1_chr22_-_29663824 AL050346 NM_012265	64817	-	NM_001163285 NM_001163286 NM_001163287 NM_005243 NM_013986 TSC_hg19_v1_chr22_+_29664088	64996	+	BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##BC042614|ZNRF3|84133|zinc and ring finger 3##BC046358|EMID1|129080|EMI domain containing 1##NM_133455|EMID1|129080|EMI domain containing 1##CR456407|EMID1|129080|EMI domain containing 1##CU012965|EMID1|129080|EMI domain containing 1##CU013253|EMID1|129080|EMI domain containing 1##AJ416090|EMID1|129080|EMI domain containing 1##AL050346|RHBDD3|25807|rhomboid domain containing 3##NM_012265|RHBDD3|25807|rhomboid domain containing 3##NM_001163285|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163286|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_001163287|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_005243|EWSR1|2130|Ewing sarcoma breakpoint region 1##NM_013986|EWSR1|2130|Ewing sarcoma breakpoint region 1	0.0	0.0	
chr3	105596048	105596228	reg1009657.p2	3.938	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-8331	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-175084	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-510316	+	TSC_hg19_v1_chr3_-_106959482 BC036229	1363341	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1363454	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1500172	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	1.497343	0.0	denovo_WM_7:28:0.397	denovo_WM_7:55:0.514
chr6	114740652	114740795	reg1013487.p2	3.938	+	AF503292 NM_153612 BC093911 BC093913	-356699	-	TSC_hg19_v1_chr6_-_114292324 BC031055 BC013141 AK296856 NM_001527	-448387	-	TSC_hg19_v1_chr6_-_114292291 U31814 AK097376	-448451	-	BC012916 U22322 NM_002031 U00803 TSC_hg19_v1_chr6_-_116381939 AK313314	1641159	-	TSC_hg19_v1_chr6_+_116422015 NM_152729 AK308337 BC136832 BC136841 BC108699 AK290408	1681286	+	AK097758 TSC_hg19_v1_chr6_-_116422450	1681707	-	AF503292|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##NM_153612|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093911|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC093913|HS3ST5|222537|heparan sulfate (glucosamine) 3-O-sulfotransferase 5##BC031055|HDAC2|3066|histone deacetylase 2##BC013141|HDAC2|3066|histone deacetylase 2##AK296856|HDAC2|3066|histone deacetylase 2##NM_001527|HDAC2|3066|histone deacetylase 2##U31814|HDAC2|3066|histone deacetylase 2##AK097376|HDAC2|3066|histone deacetylase 2##BC012916|FRK|2444|fyn-related kinase##U22322|FRK|2444|fyn-related kinase##NM_002031|FRK|2444|fyn-related kinase##U00803|FRK|2444|fyn-related kinase##AK313314|FRK|2444|fyn-related kinase##NM_152729|NT5DC1|221294|5'-nucleotidase domain containing 1##AK308337|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136832|NT5DC1|221294|5'-nucleotidase domain containing 1##BC136841|NT5DC1|221294|5'-nucleotidase domain containing 1##BC108699|NT5DC1|221294|5'-nucleotidase domain containing 1##AK290408|NT5DC1|221294|5'-nucleotidase domain containing 1	0.947704	0.0	denovo_WM_7:-23:0.368	denovo_WM_7:-26:0.246	denovo_WM_7:-27:0.215
chr9	139545415	139545567	reg1010736.p2	3.938	+	AF308602 M73980 NM_017617 TSC_hg19_v1_chr9_-_139440260	-105241	-	TSC_hg19_v1_chr9_-_139378220 AB593115	-167249	-	BC036221 NM_152571 AK055336	-167521	+	NM_016215 AL512735 AY358903 BC088371 AY358902	11910	+	TSC_hg19_v1_chr9_+_139560219 NM_201446	14724	+	BC012377 TSC_hg19_v1_chr9_+_139560248	14780	+	AF308602|NOTCH1|4851|notch 1##M73980|NOTCH1|4851|notch 1##NM_017617|NOTCH1|4851|notch 1##AB593115|SEC16A|9919|SEC16 homolog A (S. cerevisiae)##BC036221|C9orf163|158055|chromosome 9 open reading frame 163##NM_152571|C9orf163|158055|chromosome 9 open reading frame 163##AK055336|C9orf163|158055|chromosome 9 open reading frame 163##NM_016215|EGFL7|51162|EGF-like-domain, multiple 7##AL512735|EGFL7|51162|EGF-like-domain, multiple 7##AY358903|EGFL7|51162|EGF-like-domain, multiple 7##BC088371|EGFL7|51162|EGF-like-domain, multiple 7##AY358902|EGFL7|51162|EGF-like-domain, multiple 7##NM_201446|EGFL7|51162|EGF-like-domain, multiple 7##BC012377|EGFL7|51162|EGF-like-domain, multiple 7	0.0	0.0	
chr10	97526116	97526233	reg1017077.p1	3.937	+	NM_001164178 NM_001164181 AK301459 AK298648 AK098278 NM_001164179 NM_001164182 NM_001164183 NM_001776	-10634	+	AJ133133 AJ133134 NM_001098175	-54639	+	BC068449 DQ278872 NM_001143973 NM_015631	-72275	-	AK294399 NM_001130446	141547	+	NM_001001732 NM_001159747 AK302377 BC075861	233690	+	TSC_hg19_v1_chr10_+_97803318 BC043175 NM_001134375 NM_001134376 NM_019084 AK092360 AK297264 AX747499	277207	+	NM_001164178|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164181|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK301459|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK298648|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AK098278|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164179|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164182|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001164183|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001776|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133133|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##AJ133134|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##NM_001098175|ENTPD1|953|ectonucleoside triphosphate diphosphohydrolase 1##BC068449|TCTN3|26123|tectonic family member 3##DQ278872|TCTN3|26123|tectonic family member 3##NM_001143973|TCTN3|26123|tectonic family member 3##NM_015631|TCTN3|26123|tectonic family member 3##AK294399|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001130446|C10orf131|100127889|chromosome 10 open reading frame 131##NM_001001732|CC2D2B|387707|coiled-coil and C2 domain containing 2B##NM_001159747|CC2D2B|387707|coiled-coil and C2 domain containing 2B##AK302377|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC075861|CC2D2B|387707|coiled-coil and C2 domain containing 2B##BC043175|CCNJ|54619|cyclin J##NM_001134375|CCNJ|54619|cyclin J##NM_001134376|CCNJ|54619|cyclin J##NM_019084|CCNJ|54619|cyclin J##AK092360|CCNJ|54619|cyclin J##AK297264|CCNJ|54619|cyclin J	0.0	0.0	
chr1	53332872	53332966	reg1013079.p1	3.937	+	AY271826 NM_001004339	-24737	+	TSC_hg19_v1_chr1_-_53238345 D28429	-94576	-	TSC_hg19_v1_chr1_+_53192124 AK296460 NM_024646 AB051517	-140801	+	TSC_hg19_v1_chr1_-_53387217 AK300896 AK299834	54308	-	TSC_hg19_v1_chr1_-_53387399 CU692200 BC038389 BC044574 AK315906 AK310650 AK001810	54450	-	TSC_hg19_v1_chr1_-_53387413 BC051887 BC040480 NM_001198961 NM_001198962 NM_018281 AK309535	54574	-	AY271826|ZYG11A|440590|zyg-11 homolog A (C. elegans)##NM_001004339|ZYG11A|440590|zyg-11 homolog A (C. elegans)##AK296460|ZYG11B|79699|zyg-11 homolog B (C. elegans)##NM_024646|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AB051517|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AK300896|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK299834|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC038389|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC044574|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK315906|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK310650|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK001810|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC051887|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC040480|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_001198961|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_001198962|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_018281|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK309535|ECHDC2|55268|enoyl CoA hydratase domain containing 2	0.0	0.0	
chr17	37923438	37923523	reg1007506.p1	3.937	+	AK290115 NM_001242443	-27261	+	AK125544 NM_001242442	-28457	+	AK294620 NM_001030002 BC006535 TSC_hg19_v1_chr17_+_37894600	-28901	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	96950	-	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	100963	+	AF119884 NM_018530	150312	-	AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AK125544|GRB7|2886|growth factor receptor-bound protein 7##NM_001242442|GRB7|2886|growth factor receptor-bound protein 7##AK294620|GRB7|2886|growth factor receptor-bound protein 7##NM_001030002|GRB7|2886|growth factor receptor-bound protein 7##BC006535|GRB7|2886|growth factor receptor-bound protein 7##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B	0.0	0.0	
chr4	40671528	40671667	reg1011537.p2	3.937	+	AK304206 TSC_hg19_v1_chr4_-_40632775	-38890	-	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	-39732	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-153639	-	BC042401 NM_024677 BC036568 AK024063	80349	+	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	187578	-	BC088372 TSC_hg19_v1_chr4_-_40936716	265081	-	AK304206|RBM47|54502|RNA binding motif protein 47##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2	0.0	0.0	
chr6	46058004	46058168	reg1018341.p1	3.937	+	AY032602 AK097048 NM_001114086	-10055	-	DQ892643 DQ895881 CU690236 AF176920 AK314416 AK075163 TSC_hg19_v1_chr6_-_45983598 AK075144 AF216941 AK222544 BC035968 DQ679794 AK223130 NM_016929	-74609	-	TSC_hg19_v1_chr6_+_45390379 L40992	-667674	+	NM_014936 TSC_hg19_v1_chr6_+_46097726 BC018054	39628	+	TSC_hg19_v1_chr6_+_46097818 AK291276 AB020686	39778	+	AK312790 TSC_hg19_v1_chr6_-_46138695 BC027615 AY358514 AK292842 AK295192 BX647968 NM_021572	80580	-	AY032602|CLIC5|53405|chloride intracellular channel 5##AK097048|CLIC5|53405|chloride intracellular channel 5##NM_001114086|CLIC5|53405|chloride intracellular channel 5##DQ892643|CLIC5|53405|chloride intracellular channel 5##DQ895881|CLIC5|53405|chloride intracellular channel 5##AF176920|CLIC5|53405|chloride intracellular channel 5##AK314416|CLIC5|53405|chloride intracellular channel 5##AK075163|CLIC5|53405|chloride intracellular channel 5##AK075144|CLIC5|53405|chloride intracellular channel 5##AF216941|CLIC5|53405|chloride intracellular channel 5##AK222544|CLIC5|53405|chloride intracellular channel 5##BC035968|CLIC5|53405|chloride intracellular channel 5##DQ679794|CLIC5|53405|chloride intracellular channel 5##AK223130|CLIC5|53405|chloride intracellular channel 5##NM_016929|CLIC5|53405|chloride intracellular channel 5##L40992|RUNX2|860|runt-related transcription factor 2##NM_014936|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##BC018054|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##AK291276|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##AB020686|ENPP4|22875|ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative)##AK312790|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##BC027615|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AY358514|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AK292842|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##AK295192|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##BX647968|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)##NM_021572|ENPP5|59084|ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative)	0.995076	0.986675	CTCF.p2:-49:0.987	denovo_WM_7:64:0.837
chr7	77855535	77855658	reg1016501.p1	3.937	+	BC022419 NM_001127357 NM_001127359 NM_020432 AL831969 BC127093 BC127094 AB463202 AM392983 AM393200 CU688318 CU692612	-386087	+	BC067742 TSC_hg19_v1_chr7_+_77428204 AL136883	-427386	+	TSC_hg19_v1_chr7_+_77428194 NM_001127358 NM_001127360 AK225854 AK090643 AX746556 AK308289	-427455	+	AB014605 BC150277 AK297353 AF038563 NM_012301	1227283	-	TSC_hg19_v1_chr7_+_79083303 AK311103	1227561	+	TSC_hg19_v1_chr7_+_79764166 NM_002069 BC026326 AL049933 AK292953	1908543	+	BC022419|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127357|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127359|PHTF2|57157|putative homeodomain transcription factor 2##NM_020432|PHTF2|57157|putative homeodomain transcription factor 2##AL831969|PHTF2|57157|putative homeodomain transcription factor 2##BC127093|PHTF2|57157|putative homeodomain transcription factor 2##BC127094|PHTF2|57157|putative homeodomain transcription factor 2##AM392983|PHTF2|57157|putative homeodomain transcription factor 2##AM393200|PHTF2|57157|putative homeodomain transcription factor 2##BC067742|PHTF2|57157|putative homeodomain transcription factor 2##AL136883|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127358|PHTF2|57157|putative homeodomain transcription factor 2##NM_001127360|PHTF2|57157|putative homeodomain transcription factor 2##AK225854|PHTF2|57157|putative homeodomain transcription factor 2##AK090643|PHTF2|57157|putative homeodomain transcription factor 2##AK308289|PHTF2|57157|putative homeodomain transcription factor 2##AB014605|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##BC150277|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK297353|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AF038563|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##NM_012301|MAGI2|9863|membrane associated guanylate kinase, WW and PDZ domain containing 2##AK311103|MAGI2-AS3|100505881|MAGI2 antisense RNA 3 (non-protein coding)##NM_002069|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##BC026326|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AL049933|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1##AK292953|GNAI1|2770|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1	0.999734	0.8269	CTCF.p2:-22:0.827	denovo_WM_7:49:0.230	denovo_WM_7:50:0.230	denovo_WM_7:51:0.230	denovo_WM_7:52:0.230
chr9	132772270	132772450	reg1003021.p1	3.937	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-174595	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-174638	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-174676	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	32994	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	33128	-	BC039728 NM_001136557 NM_001136558 NM_020960	43624	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.996443	0.0	
chr11	73499389	73499546	reg1014805.p2	3.936	+	AF161408 TSC_hg19_v1_chr11_+_73498935 AK297746 NM_016055 BC009764 AK309219 AK310005	-541	+	BC034996 TSC_hg19_v1_chr11_-_73472120 BC003617 AK309311 AK223551 AK289748 BC096818 AK057157 BC068486 NM_001243718 NM_002869 NM_198896	-27320	-	AK301534 NM_001243719	-28331	-	TSC_hg19_v1_chr11_-_73587892 AL359618 AK000434 NM_016565 BC106036	88429	-	BC028677 TSC_hg19_v1_chr11_+_73588043 AK021910 AK222501 NM_025155 AK316394 AK225520 BC045774 BC021541 BC028628 BC006142 CU675271 AF087895	88578	+	AY138810 NM_153614	161896	+	AF161408|MRPL48|51642|mitochondrial ribosomal protein L48##AK297746|MRPL48|51642|mitochondrial ribosomal protein L48##NM_016055|MRPL48|51642|mitochondrial ribosomal protein L48##BC009764|MRPL48|51642|mitochondrial ribosomal protein L48##AK309219|MRPL48|51642|mitochondrial ribosomal protein L48##AK310005|MRPL48|51642|mitochondrial ribosomal protein L48##BC034996|RAB6A|5870|RAB6A, member RAS oncogene family##BC003617|RAB6A|5870|RAB6A, member RAS oncogene family##AK309311|RAB6A|5870|RAB6A, member RAS oncogene family##AK223551|RAB6A|5870|RAB6A, member RAS oncogene family##AK289748|RAB6A|5870|RAB6A, member RAS oncogene family##BC096818|RAB6A|5870|RAB6A, member RAS oncogene family##AK057157|RAB6A|5870|RAB6A, member RAS oncogene family##BC068486|RAB6A|5870|RAB6A, member RAS oncogene family##NM_001243718|RAB6A|5870|RAB6A, member RAS oncogene family##NM_002869|RAB6A|5870|RAB6A, member RAS oncogene family##NM_198896|RAB6A|5870|RAB6A, member RAS oncogene family##AK301534|RAB6A|5870|RAB6A, member RAS oncogene family##NM_001243719|RAB6A|5870|RAB6A, member RAS oncogene family##AL359618|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##AK000434|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##NM_016565|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##BC106036|CHCHD8|51287|coiled-coil-helix-coiled-coil-helix domain containing 8##BC028677|PAAF1|80227|proteasomal ATPase-associated factor 1##AK021910|PAAF1|80227|proteasomal ATPase-associated factor 1##AK222501|PAAF1|80227|proteasomal ATPase-associated factor 1##NM_025155|PAAF1|80227|proteasomal ATPase-associated factor 1##AK316394|PAAF1|80227|proteasomal ATPase-associated factor 1##AK225520|PAAF1|80227|proteasomal ATPase-associated factor 1##BC045774|PAAF1|80227|proteasomal ATPase-associated factor 1##BC021541|PAAF1|80227|proteasomal ATPase-associated factor 1##BC028628|PAAF1|80227|proteasomal ATPase-associated factor 1##BC006142|PAAF1|80227|proteasomal ATPase-associated factor 1##AF087895|PAAF1|80227|proteasomal ATPase-associated factor 1##AY138810|DNAJB13|374407|DnaJ (Hsp40) homolog, subfamily B, member 13##NM_153614|DNAJB13|374407|DnaJ (Hsp40) homolog, subfamily B, member 13	1.657676	0.0	denovo_WM_7:49:0.585	denovo_WM_7:64:0.342	denovo_WM_7:65:0.375
chr13	79801824	79801914	reg1017198.p1	3.936	+	TSC_hg19_v1_chr13_-_79233291 AL136651 CR936764 CR936752 CR936754 BC136764 BC136765 BC028586 NM_024546	-568576	-	TSC_hg19_v1_chr13_-_79177711 L20433 NM_006237	-624146	-	TSC_hg19_v1_chr13_+_79170263 BC041859 BC032872	-631587	+	BX648672 BC111697 BC111739 BC041655 NM_022118 TSC_hg19_v1_chr13_-_79979967 AK302871	178085	-	BC030806 TSC_hg19_v1_chr13_-_79980382	178514	-	TSC_hg19_v1_chr13_+_79980440 AK002196 BC034812	178582	+	AL136651|RNF219|79596|ring finger protein 219##CR936764|RNF219|79596|ring finger protein 219##CR936752|RNF219|79596|ring finger protein 219##CR936754|RNF219|79596|ring finger protein 219##BC136764|RNF219|79596|ring finger protein 219##BC136765|RNF219|79596|ring finger protein 219##BC028586|RNF219|79596|ring finger protein 219##NM_024546|RNF219|79596|ring finger protein 219##L20433|POU4F1|5457|POU class 4 homeobox 1##NM_006237|POU4F1|5457|POU class 4 homeobox 1##BC041859|LOC780529|780529|uncharacterized LOC780529##BC032872|LOC780529|780529|uncharacterized LOC780529##BX648672|RBM26|64062|RNA binding motif protein 26##BC111697|RBM26|64062|RNA binding motif protein 26##BC111739|RBM26|64062|RNA binding motif protein 26##BC041655|RBM26|64062|RNA binding motif protein 26##NM_022118|RBM26|64062|RNA binding motif protein 26##AK302871|RBM26|64062|RNA binding motif protein 26##BC030806|RBM26|64062|RNA binding motif protein 26##AK002196|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)##BC034812|RBM26-AS1|100505538|RBM26 antisense RNA 1 (non-protein coding)	0.0	0.0	
chr14	21785679	21785779	reg1014624.p1	3.936	+	AJ417067 NM_020366	-29594	+	M16342 BC108658 BX247992 BC089438 BC008364 TSC_hg19_v1_chr14_-_21737587 BC003394 BC071943 BX247961 M29063 AB209527 AK223517 BC066932 AK298906 AK312382 D28382 AK297482 AK299923 AK312338 BC103758 AK292619 BC007052 BC008423 AL833432 BC092433 AK225032 AK302213 NM_001077442 NM_001077443 NM_004500 NM_031314	-48158	-	NM_001004731 BC137304 BC137305	-161527	-	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	66393	-	BC000565 BC014046 TSC_hg19_v1_chr14_-_21852177 BC021561 BC111402	66440	-	AK024072 NM_007192	66695	-	AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##M16342|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC108658|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247992|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC089438|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008364|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC003394|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC071943|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247961|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##M29063|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AB209527|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK223517|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC066932|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK298906|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##D28382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK297482|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK299923|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312338|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC103758|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK292619|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC007052|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008423|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AL833432|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC092433|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK225032|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK302213|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077442|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077443|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_004500|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_031314|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001004731|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137304|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137305|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC000565|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC014046|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC111402|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK024072|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##NM_007192|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)	0.0	0.0	
chr14	40192212	40192325	reg1018359.p1	3.936	+	BC053537 BC068566 BC030611 NM_203301	-290607	-	TSC_hg19_v1_chr14_-_39901371 BX248772	-290911	-	TSC_hg19_v1_chr14_+_39736592 BC039017 AK315254 BC029513 BC051363 U73682	-455695	+	NM_152447 AK096627	1884499	+	AK302615 CR933626 BC039878 CR933608 AK124110 NM_032135	4784207	-	TSC_hg19_v1_chr14_+_45366532 NM_001017923 BC105030 BC105032 AF250395	5174230	+	BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##BX248772|FBXO33|254170|F-box protein 33##BC039017|CTAGE5|4253|CTAGE family, member 5##AK315254|CTAGE5|4253|CTAGE family, member 5##BC029513|CTAGE5|4253|CTAGE family, member 5##BC051363|CTAGE5|4253|CTAGE family, member 5##U73682|CTAGE5|4253|CTAGE family, member 5##NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK302615|FSCB|84075|fibrous sheath CABYR binding protein##CR933626|FSCB|84075|fibrous sheath CABYR binding protein##BC039878|FSCB|84075|fibrous sheath CABYR binding protein##CR933608|FSCB|84075|fibrous sheath CABYR binding protein##AK124110|FSCB|84075|fibrous sheath CABYR binding protein##NM_032135|FSCB|84075|fibrous sheath CABYR binding protein##NM_001017923|C14orf28|122525|chromosome 14 open reading frame 28##BC105030|C14orf28|122525|chromosome 14 open reading frame 28##BC105032|C14orf28|122525|chromosome 14 open reading frame 28##AF250395|C14orf28|122525|chromosome 14 open reading frame 28	0.0	0.0	
chr15	91466182	91466299	reg1017543.p1	3.936	+	BC136448 BC144111 NM_006122	-18821	+	AK289863 TSC_hg19_v1_chr15_+_91446685	-19615	+	TSC_hg19_v1_chr15_+_91445984 D55649 L28821	-20264	+	AK125721 BC045635 NM_001039675	7169	+	TSC_hg19_v1_chr15_-_91475772 CU689746 NM_198527 BC033794 AK057584	9496	-	NM_018671	11974	+	BC136448|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##BC144111|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##NM_006122|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##AK289863|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##D55649|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##L28821|MAN2A2|4122|mannosidase, alpha, class 2A, member 2##AK125721|UNC45A|55898|unc-45 homolog A (C. elegans)##BC045635|UNC45A|55898|unc-45 homolog A (C. elegans)##NM_001039675|UNC45A|55898|unc-45 homolog A (C. elegans)##NM_198527|HDDC3|374659|HD domain containing 3##BC033794|HDDC3|374659|HD domain containing 3##AK057584|HDDC3|374659|HD domain containing 3##NM_018671|UNC45A|55898|unc-45 homolog A (C. elegans)	1.034616	0.0	denovo_WM_7:-44:0.334
chr16	50715668	50715786	reg1008939.p1	3.936	+	TSC_hg19_v1_chr16_-_50715246 NM_001144972 NM_153337 NM_182854	-426	-	BC119626 AY302441 TSC_hg19_v1_chr16_-_50715230 BC063423 BC027944 AK292650 AK055837 AK292705	-550	-	TSC_hg19_v1_chr16_-_50647562 AK124375	-68149	-	AF178930 AY187243 NM_022162 AY187244 AY187246 AB527390	15374	+	NM_001042355 NM_015247 TSC_hg19_v1_chr16_+_50775996 AK292975 AK225202 AJ250014 AK310832 AK056226	60257	+	TSC_hg19_v1_chr16_+_50776066 AF161542 NM_001042412 BC012342	60331	+	NM_001144972|SNX20|124460|sorting nexin 20##NM_153337|SNX20|124460|sorting nexin 20##NM_182854|SNX20|124460|sorting nexin 20##BC119626|SNX20|124460|sorting nexin 20##AY302441|SNX20|124460|sorting nexin 20##BC063423|SNX20|124460|sorting nexin 20##BC027944|SNX20|124460|sorting nexin 20##AK292650|SNX20|124460|sorting nexin 20##AK055837|SNX20|124460|sorting nexin 20##AK292705|SNX20|124460|sorting nexin 20##AF178930|NOD2|64127|nucleotide-binding oligomerization domain containing 2##AY187243|NOD2|64127|nucleotide-binding oligomerization domain containing 2##NM_022162|NOD2|64127|nucleotide-binding oligomerization domain containing 2##AY187244|NOD2|64127|nucleotide-binding oligomerization domain containing 2##AY187246|NOD2|64127|nucleotide-binding oligomerization domain containing 2##NM_001042355|CYLD|1540|cylindromatosis (turban tumor syndrome)##NM_015247|CYLD|1540|cylindromatosis (turban tumor syndrome)##AK292975|CYLD|1540|cylindromatosis (turban tumor syndrome)##AK225202|CYLD|1540|cylindromatosis (turban tumor syndrome)##AJ250014|CYLD|1540|cylindromatosis (turban tumor syndrome)##AK310832|CYLD|1540|cylindromatosis (turban tumor syndrome)##AK056226|CYLD|1540|cylindromatosis (turban tumor syndrome)##AF161542|CYLD|1540|cylindromatosis (turban tumor syndrome)##NM_001042412|CYLD|1540|cylindromatosis (turban tumor syndrome)##BC012342|CYLD|1540|cylindromatosis (turban tumor syndrome)	0.990179	0.042393	denovo_WM_7:57:0.741
chr3	71442407	71442505	reg1010903.p1	3.936	+	AK092383 AX747510 NM_001244812	-88546	-	TSC_hg19_v1_chr3_-_71294229 AK074321 NM_001244814	-148184	-	TSC_hg19_v1_chr3_-_71180072 NM_001244815	-262377	-	TSC_hg19_v1_chr3_-_71542628 AF146696 BC054505	100211	-	AF250920 NM_001244816	150251	-	TSC_hg19_v1_chr3_-_71632874 AK122710 NM_001244808 BC005055 BC054815 BC071893 BC080521 BC068481 NM_001012505 NM_001244810 NM_032682	190522	-	AK092383|FOXP1|27086|forkhead box P1##NM_001244812|FOXP1|27086|forkhead box P1##AK074321|FOXP1|27086|forkhead box P1##NM_001244814|FOXP1|27086|forkhead box P1##NM_001244815|FOXP1|27086|forkhead box P1##AF146696|FOXP1|27086|forkhead box P1##BC054505|FOXP1|27086|forkhead box P1##AF250920|FOXP1|27086|forkhead box P1##NM_001244816|FOXP1|27086|forkhead box P1##AK122710|FOXP1|27086|forkhead box P1##NM_001244808|FOXP1|27086|forkhead box P1##BC005055|FOXP1|27086|forkhead box P1##BC054815|FOXP1|27086|forkhead box P1##BC071893|FOXP1|27086|forkhead box P1##BC080521|FOXP1|27086|forkhead box P1##BC068481|FOXP1|27086|forkhead box P1##NM_001012505|FOXP1|27086|forkhead box P1##NM_001244810|FOXP1|27086|forkhead box P1##NM_032682|FOXP1|27086|forkhead box P1	0.383372	0.0	
chr6	157254350	157254457	reg1017641.p2	3.936	+	TSC_hg19_v1_chr6_+_157099876 AF253515	-154528	+	TSC_hg19_v1_chr6_+_157099283 AF521671	-155119	+	TSC_hg19_v1_chr6_+_157099206 AB587572	-155178	+	TSC_hg19_v1_chr6_-_157744547 AK000891 BC029130 BC146893 BC146895 AF161405 AF217510	490181	-	TSC_hg19_v1_chr6_-_157745183 NM_018452	490814	-	TSC_hg19_v1_chr6_+_157802538 AF542388 AF542389 NM_024630 NM_153746 BC125072 BC125073	548136	+	AF253515|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AF521671|ARID1B|57492|AT rich interactive domain 1B (SWI1-like)##AK000891|TMEM242|729515|transmembrane protein 242##BC029130|TMEM242|729515|transmembrane protein 242##BC146893|TMEM242|729515|transmembrane protein 242##BC146895|TMEM242|729515|transmembrane protein 242##AF161405|TMEM242|729515|transmembrane protein 242##AF217510|TMEM242|729515|transmembrane protein 242##NM_018452|TMEM242|729515|transmembrane protein 242##AF542388|ZDHHC14|79683|zinc finger, DHHC-type containing 14##AF542389|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_024630|ZDHHC14|79683|zinc finger, DHHC-type containing 14##NM_153746|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125072|ZDHHC14|79683|zinc finger, DHHC-type containing 14##BC125073|ZDHHC14|79683|zinc finger, DHHC-type containing 14	1.200494	0.0	denovo_WM_7:-20:0.597	denovo_WM_7:-21:0.291
chr7	69140415	69140547	reg1016248.p2	3.936	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-75893	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-76152	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-76645	+	TSC_hg19_v1_chr7_+_70231164 AK296981	1090724	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1457307	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2661297	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.997829	0.0	
chr10	101760316	101760382	reg1008224.p1	3.935	+	BC020878 TSC_hg19_v1_chr10_-_101690657 AK128576	-69646	-	TSC_hg19_v1_chr10_+_101542570 X96395 BC136419 U63970	-217786	+	TSC_hg19_v1_chr10_+_101542477 NM_000392 U49248 U66683	-217854	+	TSC_hg19_v1_chr10_-_101769671 AL833283 NM_015221	9312	-	X14329 BC027897 NM_001308 AK313972	81276	-	TSC_hg19_v1_chr10_-_101945727 NM_006459 AK222480 AK298427 AK315580	185387	-	AK128576|DNMBP|23268|dynamin binding protein##X96395|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##BC136419|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U63970|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##NM_000392|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U49248|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##U66683|ABCC2|1244|ATP-binding cassette, sub-family C (CFTR/MRP), member 2##AL833283|DNMBP|23268|dynamin binding protein##NM_015221|DNMBP|23268|dynamin binding protein##X14329|CPN1|1369|carboxypeptidase N, polypeptide 1##BC027897|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_001308|CPN1|1369|carboxypeptidase N, polypeptide 1##AK313972|CPN1|1369|carboxypeptidase N, polypeptide 1##NM_006459|ERLIN1|10613|ER lipid raft associated 1##AK222480|ERLIN1|10613|ER lipid raft associated 1##AK298427|ERLIN1|10613|ER lipid raft associated 1##AK315580|ERLIN1|10613|ER lipid raft associated 1	0.0	0.0	
chr14	34394110	34394240	reg1014429.p1	3.935	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-985685	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1595639	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1847669	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	25974	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	537312	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	614710	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	0.994967	0.0	
chr14	56014151	56014295	reg1011454.p1	3.935	+	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	-106926	-	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	-135667	-	NM_152231	-275352	+	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	32593	-	TSC_hg19_v1_chr14_+_56046963 NM_001079521 NM_001079522 NM_004986 NM_182926 BC066337 D13629 AK302797 BC050555 BC058736 Z22551 AY264265 BC112337	32879	+	L25616 TSC_hg19_v1_chr14_+_56078737 AB527439	64526	+	AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_152231|FBXO34|55030|F-box protein 34##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##NM_001079521|KTN1|3895|kinectin 1 (kinesin receptor)##NM_001079522|KTN1|3895|kinectin 1 (kinesin receptor)##NM_004986|KTN1|3895|kinectin 1 (kinesin receptor)##NM_182926|KTN1|3895|kinectin 1 (kinesin receptor)##BC066337|KTN1|3895|kinectin 1 (kinesin receptor)##D13629|KTN1|3895|kinectin 1 (kinesin receptor)##AK302797|KTN1|3895|kinectin 1 (kinesin receptor)##BC050555|KTN1|3895|kinectin 1 (kinesin receptor)##BC058736|KTN1|3895|kinectin 1 (kinesin receptor)##Z22551|KTN1|3895|kinectin 1 (kinesin receptor)##AY264265|KTN1|3895|kinectin 1 (kinesin receptor)##BC112337|KTN1|3895|kinectin 1 (kinesin receptor)##L25616|KTN1|3895|kinectin 1 (kinesin receptor)	0.995567	0.0	
chr14	93586736	93586916	reg1012232.p1	3.935	+	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	-4612	-	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	-5235	-	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-197229	+	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	64374	-	TSC_hg19_v1_chr14_-_93651243 NM_022151	64419	-	AK315522 TSC_hg19_v1_chr14_-_93651261	64442	-	BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1##NM_022151|MOAP1|64112|modulator of apoptosis 1##AK315522|MOAP1|64112|modulator of apoptosis 1	0.991748	0.0	
chr17	42409032	42409147	reg1011935.p2	3.935	+	TSC_hg19_v1_chr17_-_42402202 NM_001143780 NM_016016	-6882	-	TSC_hg19_v1_chr17_-_42402172 BC096819 BC009330 AK026060 AL133584 BC001398 AK289357 AK295478 AK301139	-6923	-	AL133657 NM_001144825 NM_001144826 NM_006695 TSC_hg19_v1_chr17_+_42385950 AB209802 AK226045 BC006194 AK313669 BX537443 AF055026 CR456748 CU675291 U93871	-23099	+	BC000324 NM_002087 TSC_hg19_v1_chr17_+_42422623	13467	+	TSC_hg19_v1_chr17_+_42422640 AF055008	13548	+	TSC_hg19_v1_chr17_+_42422669 AK000607 AK222522 AK296090 X62320 AK303830	13587	+	NM_001143780|SLC25A39|51629|solute carrier family 25, member 39##NM_016016|SLC25A39|51629|solute carrier family 25, member 39##BC096819|SLC25A39|51629|solute carrier family 25, member 39##BC009330|SLC25A39|51629|solute carrier family 25, member 39##AK026060|SLC25A39|51629|solute carrier family 25, member 39##AL133584|SLC25A39|51629|solute carrier family 25, member 39##BC001398|SLC25A39|51629|solute carrier family 25, member 39##AK289357|SLC25A39|51629|solute carrier family 25, member 39##AK295478|SLC25A39|51629|solute carrier family 25, member 39##AK301139|SLC25A39|51629|solute carrier family 25, member 39##AL133657|RUNDC3A|10900|RUN domain containing 3A##NM_001144825|RUNDC3A|10900|RUN domain containing 3A##NM_001144826|RUNDC3A|10900|RUN domain containing 3A##NM_006695|RUNDC3A|10900|RUN domain containing 3A##AB209802|RUNDC3A|10900|RUN domain containing 3A##AK226045|RUNDC3A|10900|RUN domain containing 3A##BC006194|RUNDC3A|10900|RUN domain containing 3A##AK313669|RUNDC3A|10900|RUN domain containing 3A##BX537443|RUNDC3A|10900|RUN domain containing 3A##AF055026|RUNDC3A|10900|RUN domain containing 3A##CR456748|RUNDC3A|10900|RUN domain containing 3A##U93871|RUNDC3A|10900|RUN domain containing 3A##BC000324|GRN|2896|granulin##NM_002087|GRN|2896|granulin##AF055008|GRN|2896|granulin##AK000607|GRN|2896|granulin##AK222522|GRN|2896|granulin##AK296090|GRN|2896|granulin##X62320|GRN|2896|granulin##AK303830|GRN|2896|granulin	0.995074	0.0	denovo_WM_7:42:0.736
chr19	7457961	7458040	reg1015996.p2	3.935	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	-164040	-	TSC_hg19_v1_chr19_-_7099547 AK127494	-358449	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-388285	+	TSC_hg19_v1_chr19_+_7460030 NM_015318	2007	+	TSC_hg19_v1_chr19_+_7460061 AB011093	2077	+	AK127045 NM_001130955	46573	+	BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AK127045|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##NM_001130955|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	1.749118	0.0	denovo_WM_7:-42:0.324	denovo_WM_7:-57:0.238	denovo_WM_7:-58:0.400
chr21	45358603	45358699	reg1008159.p2	3.935	+	AK300562 NM_001037553	-13373	+	TSC_hg19_v1_chr21_+_45285103 NM_020132 BC011971	-73528	+	TSC_hg19_v1_chr21_+_45285029 AY358704	-73591	+	TSC_hg19_v1_chr21_+_45432211 BC071569 NM_003274 U61500 BC046241 BC052247 BC094823 U19252 BC101728 AB385171 CU692332	73689	+	TSC_hg19_v1_chr21_+_45527202 AK314184	168551	+	TSC_hg19_v1_chr21_+_45527251 NM_005049	168577	+	AK300562|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_001037553|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##NM_020132|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC011971|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##AY358704|AGPAT3|56894|1-acylglycerol-3-phosphate O-acyltransferase 3##BC071569|TRAPPC10|7109|trafficking protein particle complex 10##NM_003274|TRAPPC10|7109|trafficking protein particle complex 10##U61500|TRAPPC10|7109|trafficking protein particle complex 10##BC046241|TRAPPC10|7109|trafficking protein particle complex 10##BC052247|TRAPPC10|7109|trafficking protein particle complex 10##BC094823|TRAPPC10|7109|trafficking protein particle complex 10##U19252|TRAPPC10|7109|trafficking protein particle complex 10##BC101728|TRAPPC10|7109|trafficking protein particle complex 10##AK314184|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)##NM_005049|PWP2|5822|PWP2 periodic tryptophan protein homolog (yeast)	0.0	0.0	
chr2	70057832	70057959	reg1017298.p2	3.935	+	TSC_hg19_v1_chr2_+_70056924 AB527982 EU832645 EU832722 CU675651	-924	+	AK024042 TSC_hg19_v1_chr2_+_70056791 BC007420 NM_178439 AK023119	-1088	+	BC011659 TSC_hg19_v1_chr2_+_69969265 AK293406 AK303960 AK058017 AK315511 AK293396 M19383 M82809	-88630	+	NM_006857 TSC_hg19_v1_chr2_+_70121093 BC017890 X76302 AK291128 AK312041 CU676102	63204	+	TSC_hg19_v1_chr2_+_70142202 NM_001202513 NM_001202514 NM_002357 BC098396	84298	+	TSC_hg19_v1_chr2_+_70142240 AK301088 AK312734	84355	+	EU832645|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##EU832722|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK024042|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC007420|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##NM_178439|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##AK023119|GMCL1|64395|germ cell-less homolog 1 (Drosophila)##BC011659|ANXA4|307|annexin A4##AK293406|ANXA4|307|annexin A4##AK303960|ANXA4|307|annexin A4##AK058017|ANXA4|307|annexin A4##AK315511|ANXA4|307|annexin A4##AK293396|ANXA4|307|annexin A4##M19383|ANXA4|307|annexin A4##M82809|ANXA4|307|annexin A4##NM_006857|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##BC017890|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##X76302|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK291128|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##AK312041|SNRNP27|11017|small nuclear ribonucleoprotein 27kDa (U4/U6.U5)##NM_001202513|MXD1|4084|MAX dimerization protein 1##NM_001202514|MXD1|4084|MAX dimerization protein 1##NM_002357|MXD1|4084|MAX dimerization protein 1##BC098396|MXD1|4084|MAX dimerization protein 1##AK301088|MXD1|4084|MAX dimerization protein 1##AK312734|MXD1|4084|MAX dimerization protein 1	0.995815	0.0	denovo_WM_7:8:0.456	denovo_WM_7:9:0.456
chr5	116258564	116258706	reg1013952.p2	3.935	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-348121	-	TSC_hg19_v1_chr5_+_115898220 D28352	-360411	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-837914	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2065603	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2148176	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2148530	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	1.998345	0.0	denovo_WM_7:40:0.510	denovo_WM_7:41:0.274	denovo_WM_7:55:0.280	denovo_WM_7:56:0.515
chr6	143154340	143154438	reg1019369.p2	3.935	+	TSC_hg19_v1_chr6_+_142623443 BX640873	-530983	+	TSC_hg19_v1_chr6_+_142623145 BC075798 NM_001032394 NM_001032395 NM_020455 NM_198569 AF216967 AB183546 AB183547 AB183548 AB183549 AK307543 AK122617 BX648315	-531320	+	TSC_hg19_v1_chr6_+_142510627 BC013217	-643760	+	TSC_hg19_v1_chr6_-_143266314 CR936782 NM_006734	111939	-	TSC_hg19_v1_chr6_+_143382007 AK298533 AK222475 NM_016108	227606	+	BC009559 TSC_hg19_v1_chr6_+_143382031 AF153605 AK001347 BX640703	227647	+	BX640873|GPR126|57211|G protein-coupled receptor 126##BC075798|GPR126|57211|G protein-coupled receptor 126##NM_001032394|GPR126|57211|G protein-coupled receptor 126##NM_001032395|GPR126|57211|G protein-coupled receptor 126##NM_020455|GPR126|57211|G protein-coupled receptor 126##NM_198569|GPR126|57211|G protein-coupled receptor 126##AF216967|GPR126|57211|G protein-coupled receptor 126##AB183546|GPR126|57211|G protein-coupled receptor 126##AB183547|GPR126|57211|G protein-coupled receptor 126##AB183548|GPR126|57211|G protein-coupled receptor 126##AB183549|GPR126|57211|G protein-coupled receptor 126##AK307543|GPR126|57211|G protein-coupled receptor 126##AK122617|GPR126|57211|G protein-coupled receptor 126##BX648315|GPR126|57211|G protein-coupled receptor 126##BC013217|VTA1|51534|Vps20-associated 1 homolog (S. cerevisiae)##CR936782|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##NM_006734|HIVEP2|3097|human immunodeficiency virus type I enhancer binding protein 2##AK298533|AIG1|51390|androgen-induced 1##AK222475|AIG1|51390|androgen-induced 1##NM_016108|AIG1|51390|androgen-induced 1##BC009559|AIG1|51390|androgen-induced 1##AF153605|AIG1|51390|androgen-induced 1##AK001347|AIG1|51390|androgen-induced 1##BX640703|AIG1|51390|androgen-induced 1	0.0	0.0	
chr7	105897950	105898054	reg1014015.p1	3.935	+	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	-144987	-	TSC_hg19_v1_chr7_-_105752748 BC020938 BC016835 NM_182715	-145258	-	X61382 CU677735 TSC_hg19_v1_chr7_-_105752712	-145321	-	AB590725 CU687232 U02020 BC020691 TSC_hg19_v1_chr7_-_105925367 AK292851 AK304085	27360	-	BC072439 TSC_hg19_v1_chr7_-_105925430 BC106046 NM_005746	27521	-	AK093350 AX748070 BC013906 TSC_hg19_v1_chr7_-_106301480 NM_175884	403501	-	EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1##BC020938|SYPL1|6856|synaptophysin-like 1##BC016835|SYPL1|6856|synaptophysin-like 1##NM_182715|SYPL1|6856|synaptophysin-like 1##X61382|SYPL1|6856|synaptophysin-like 1##U02020|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC020691|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK292851|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK304085|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC072439|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC106046|NAMPT|10135|nicotinamide phosphoribosyltransferase##NM_005746|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK093350|C7orf74|168455|chromosome 7 open reading frame 74##BC013906|C7orf74|168455|chromosome 7 open reading frame 74##NM_175884|C7orf74|168455|chromosome 7 open reading frame 74	1.46849	0.0	denovo_WM_7:77:0.266	denovo_WM_7:-80:0.228	denovo_WM_7:-81:0.228	denovo_WM_7:-82:0.228	denovo_WM_7:-83:0.228
chr9	101148457	101148566	reg1013372.p2	3.935	+	TSC_hg19_v1_chr9_-_101018013 NM_018421	-130507	-	AK026105 CU687204 AK298575 AB209721 AB449882 AF318370 AK131290 TSC_hg19_v1_chr9_-_101017885 BC071978 AY026527	-130790	-	TSC_hg19_v1_chr9_-_100954922 AK292788 BC011690 AB209809 NM_052820	-193578	-	DQ891731 DQ894908 CU690042 TSC_hg19_v1_chr9_-_101471213 AF074483 AF099033 AJ012188 AB384741 AF069755 AF056085 NM_005458 BC035071	322674	-	CR749467 TSC_hg19_v1_chr9_-_101558801 NM_173551	410140	-	TSC_hg19_v1_chr9_+_101569953 AB527376 AB040673 AB078146 AJ132365 NM_024642	421479	+	NM_018421|TBC1D2|55357|TBC1 domain family, member 2##AK026105|TBC1D2|55357|TBC1 domain family, member 2##AK298575|TBC1D2|55357|TBC1 domain family, member 2##AB209721|TBC1D2|55357|TBC1 domain family, member 2##AB449882|TBC1D2|55357|TBC1 domain family, member 2##AF318370|TBC1D2|55357|TBC1 domain family, member 2##AK131290|TBC1D2|55357|TBC1 domain family, member 2##BC071978|TBC1D2|55357|TBC1 domain family, member 2##AY026527|TBC1D2|55357|TBC1 domain family, member 2##AK292788|CORO2A|7464|coronin, actin binding protein, 2A##BC011690|CORO2A|7464|coronin, actin binding protein, 2A##AB209809|CORO2A|7464|coronin, actin binding protein, 2A##NM_052820|CORO2A|7464|coronin, actin binding protein, 2A##DQ891731|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##DQ894908|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF074483|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF099033|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AJ012188|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF069755|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##AF056085|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##NM_005458|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##BC035071|GABBR2|9568|gamma-aminobutyric acid (GABA) B receptor, 2##CR749467|ANKS6|203286|ankyrin repeat and sterile alpha motif domain containing 6##NM_173551|ANKS6|203286|ankyrin repeat and sterile alpha motif domain containing 6##AB040673|GALNT12|79695|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)##AB078146|GALNT12|79695|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)##AJ132365|GALNT12|79695|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)##NM_024642|GALNT12|79695|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)	0.995052	0.0	denovo_WM_7:-6:0.332	denovo_WM_7:-7:0.332	denovo_WM_7:-8:0.332
chrX	103810642	103810749	reg1016525.p1	3.935	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-311109	-	TSC_hg19_v1_chrX_+_103411251 BC017665	-399428	+	TSC_hg19_v1_chrX_+_103411133 AK091221 AX746858 BC057847 NM_207318	-399571	+	AK290196 TSC_hg19_v1_chrX_+_103810879	184	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	297	+	BC108734 AF285597 BC042547 NM_031274	654658	-	BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC017665|FAM199X|139231|family with sequence similarity 199, X-linked##AK091221|FAM199X|139231|family with sequence similarity 199, X-linked##BC057847|FAM199X|139231|family with sequence similarity 199, X-linked##NM_207318|FAM199X|139231|family with sequence similarity 199, X-linked##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A	0.999405	0.0	denovo_WM_7:10:0.739
chr12	3000772	3000838	reg1011429.p1	3.934	+	TSC_hg19_v1_chr12_+_3000056 AK024246 NM_001160408 NM_003324 AK293285 AK307434 AF045583 BC032587 CU689434 AB464323 EU446713	-752	+	TSC_hg19_v1_chr12_-_2986314 NM_001243088 NM_001243089 NM_021953 NM_202002 NM_202003	-14348	-	TSC_hg19_v1_chr12_+_2986385 NM_001252499 NM_001252500 AB073599 AK021945 AK299990 AK304613 AK315364 BC005106	-14416	+	TSC_hg19_v1_chr12_+_3068645 NM_003213 NM_201441 AY101179 BC015497 AK222947 U63824 NM_201443	67789	+	TSC_hg19_v1_chr12_+_3069109 BX640921	68256	+	NM_001168320 NM_006675 TSC_hg19_v1_chr12_+_3186544 AK223179 AK027366 AF089749 BC071881	185757	+	AK024246|TULP3|7289|tubby like protein 3##NM_001160408|TULP3|7289|tubby like protein 3##NM_003324|TULP3|7289|tubby like protein 3##AK293285|TULP3|7289|tubby like protein 3##AK307434|TULP3|7289|tubby like protein 3##AF045583|TULP3|7289|tubby like protein 3##BC032587|TULP3|7289|tubby like protein 3##EU446713|TULP3|7289|tubby like protein 3##NM_001243088|FOXM1|2305|forkhead box M1##NM_001243089|FOXM1|2305|forkhead box M1##NM_021953|FOXM1|2305|forkhead box M1##NM_202002|FOXM1|2305|forkhead box M1##NM_202003|FOXM1|2305|forkhead box M1##NM_001252499|C12orf32|83695|chromosome 12 open reading frame 32##NM_001252500|C12orf32|83695|chromosome 12 open reading frame 32##AB073599|C12orf32|83695|chromosome 12 open reading frame 32##AK021945|C12orf32|83695|chromosome 12 open reading frame 32##AK304613|C12orf32|83695|chromosome 12 open reading frame 32##AK315364|C12orf32|83695|chromosome 12 open reading frame 32##BC005106|C12orf32|83695|chromosome 12 open reading frame 32##NM_003213|TEAD4|7004|TEA domain family member 4##NM_201441|TEAD4|7004|TEA domain family member 4##AY101179|TEAD4|7004|TEA domain family member 4##BC015497|TEAD4|7004|TEA domain family member 4##AK222947|TEAD4|7004|TEA domain family member 4##U63824|TEAD4|7004|TEA domain family member 4##NM_201443|TEAD4|7004|TEA domain family member 4##BX640921|TEAD4|7004|TEA domain family member 4##NM_001168320|TSPAN9|10867|tetraspanin 9##NM_006675|TSPAN9|10867|tetraspanin 9##AK223179|TSPAN9|10867|tetraspanin 9##AK027366|TSPAN9|10867|tetraspanin 9##AF089749|TSPAN9|10867|tetraspanin 9##BC071881|TSPAN9|10867|tetraspanin 9	0.0	0.0	
chr20	1477935	1478025	reg1015054.p1	3.934	+	AK097113 TSC_hg19_v1_chr20_-_1472172 NM_001122962 NM_001134836	-5780	-	AK297072 TSC_hg19_v1_chr20_-_1472142	-5846	-	AY424277 AK095499 AK294440 TSC_hg19_v1_chr20_-_1472067	-5945	-	DQ891297 EU176577 BC033502 NM_178460	60342	-	AB590891 CU692960 BC131747 Y10376 BC025286 BC075835 TSC_hg19_v1_chr20_-_1600656 AK289866 AK313517 BX537992 NM_001083910 NM_001135844 NM_006065	122658	-	AY748247 AY748248 CU687894 BC064532 BC020629 AK292745 NM_001039508 NM_018556 NM_080816	160411	-	NM_001122962|SIRPB2|284759|signal-regulatory protein beta 2##NM_001134836|SIRPB2|284759|signal-regulatory protein beta 2##AK297072|SIRPB2|284759|signal-regulatory protein beta 2##AY424277|SIRPB2|284759|signal-regulatory protein beta 2##AK095499|SIRPB2|284759|signal-regulatory protein beta 2##AK294440|SIRPB2|284759|signal-regulatory protein beta 2##DQ891297|SIRPD|128646|signal-regulatory protein delta##EU176577|SIRPD|128646|signal-regulatory protein delta##BC033502|SIRPD|128646|signal-regulatory protein delta##NM_178460|SIRPD|128646|signal-regulatory protein delta##BC131747|SIRPB1|10326|signal-regulatory protein beta 1##Y10376|SIRPB1|10326|signal-regulatory protein beta 1##BC025286|SIRPB1|10326|signal-regulatory protein beta 1##BC075835|SIRPB1|10326|signal-regulatory protein beta 1##AK289866|SIRPB1|10326|signal-regulatory protein beta 1##BX537992|SIRPB1|10326|signal-regulatory protein beta 1##NM_001083910|SIRPB1|10326|signal-regulatory protein beta 1##NM_001135844|SIRPB1|10326|signal-regulatory protein beta 1##NM_006065|SIRPB1|10326|signal-regulatory protein beta 1##AY748247|SIRPG|55423|signal-regulatory protein gamma##AY748248|SIRPG|55423|signal-regulatory protein gamma##BC064532|SIRPG|55423|signal-regulatory protein gamma##BC020629|SIRPG|55423|signal-regulatory protein gamma##AK292745|SIRPG|55423|signal-regulatory protein gamma##NM_001039508|SIRPG|55423|signal-regulatory protein gamma##NM_018556|SIRPG|55423|signal-regulatory protein gamma##NM_080816|SIRPG|55423|signal-regulatory protein gamma	1.990093	0.0	denovo_WM_7:37:0.301	denovo_WM_7:38:0.243	denovo_WM_7:55:0.244	denovo_WM_7:56:0.303
chr5	121024757	121024853	reg1017473.p1	3.934	+	TSC_hg19_v1_chr5_+_119800010 AF242769 NM_016644	-1224794	+	TSC_hg19_v1_chr5_+_119799994 BC092474	-1224857	+	BC011941 TSC_hg19_v1_chr5_-_119740564	-1284255	-	BC034419 NM_177478 HQ258558	162848	+	AK058015 NM_152546 TSC_hg19_v1_chr5_+_121297676 BC031222 CU689120 AY611630	272886	+	AK316309 AK307732 NM_001178102	388056	-	AF242769|PRR16|51334|proline rich 16##NM_016644|PRR16|51334|proline rich 16##BC092474|PRR16|51334|proline rich 16##BC034419|FTMT|94033|ferritin mitochondrial##NM_177478|FTMT|94033|ferritin mitochondrial##HQ258558|FTMT|94033|ferritin mitochondrial##AK058015|SRFBP1|153443|serum response factor binding protein 1##NM_152546|SRFBP1|153443|serum response factor binding protein 1##BC031222|SRFBP1|153443|serum response factor binding protein 1##AY611630|SRFBP1|153443|serum response factor binding protein 1##AK316309|LOX|4015|lysyl oxidase##AK307732|LOX|4015|lysyl oxidase##NM_001178102|LOX|4015|lysyl oxidase	0.0	0.0	
chr6	40687480	40687600	reg1011837.p1	3.934	+	BC142616 AB033072 NM_020737 AK291474	-132396	-	TSC_hg19_v1_chr6_-_39902202 AK300300 AF034374 AK091306 AK056740 NM_001075098	-785326	-	AB527188 AJ224328 NM_005943	-792155	-	BC035284 NM_173561 TSC_hg19_v1_chr6_-_41006954	319409	-	NM_001010873 BC104440 BC104441 BC137560 BC137565 BC144710 NM_001159726	322806	+	AK223461 AK308197 AK310006 AK313288 NM_006789 BC047767 AF161698 BC069688 BC069764 AK300689	333459	+	BC142616|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AB033072|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##NM_020737|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK291474|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK300300|MOCS1|4337|molybdenum cofactor synthesis 1##AF034374|MOCS1|4337|molybdenum cofactor synthesis 1##AK091306|MOCS1|4337|molybdenum cofactor synthesis 1##AK056740|MOCS1|4337|molybdenum cofactor synthesis 1##NM_001075098|MOCS1|4337|molybdenum cofactor synthesis 1##AJ224328|MOCS1|4337|molybdenum cofactor synthesis 1##NM_005943|MOCS1|4337|molybdenum cofactor synthesis 1##BC035284|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_173561|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_001010873|TSPO2|222642|translocator protein 2##BC104440|TSPO2|222642|translocator protein 2##BC104441|TSPO2|222642|translocator protein 2##BC137560|TSPO2|222642|translocator protein 2##BC137565|TSPO2|222642|translocator protein 2##BC144710|TSPO2|222642|translocator protein 2##NM_001159726|TSPO2|222642|translocator protein 2##AK223461|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK308197|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK310006|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK313288|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##NM_006789|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##BC047767|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AF161698|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##BC069688|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##BC069764|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2##AK300689|APOBEC2|10930|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2	0.0	0.0	
chr7	20053560	20053657	reg1014310.p2	3.934	+	BX648384 NM_152774	-241205	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-304962	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-868595	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	203372	-	AK295044 TSC_hg19_v1_chr7_+_20370337	316729	+	BC002630 NM_002214 M73780	317126	+	BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8	0.0	0.0	
chr12	122293919	122294011	reg1017069.p2	3.933	+	TSC_hg19_v1_chr12_+_122242580 NM_015048 JF813787	-51354	+	TSC_hg19_v1_chr12_-_122240852 AK311480	-53108	-	TSC_hg19_v1_chr12_-_122231563 AK000254 AF239923 BC018208 NM_019034	-62391	-	CU692906 DQ892664 DQ896049 BC024287 BC014790 X72389 TSC_hg19_v1_chr12_-_122296766 AK290826 NM_002150	2728	-	AK057510 NM_001171993	32551	-	TSC_hg19_v1_chr12_+_122326731 AB003177 NM_002813 AK315389 BC002383 BC004184 BC004213 DQ893594 EU831432 EU831524 AB528684	32730	+	NM_015048|SETD1B|23067|SET domain containing 1B##JF813787|SETD1B|23067|SET domain containing 1B##AK000254|RHOF|54509|ras homolog gene family, member F (in filopodia)##AF239923|RHOF|54509|ras homolog gene family, member F (in filopodia)##BC018208|RHOF|54509|ras homolog gene family, member F (in filopodia)##NM_019034|RHOF|54509|ras homolog gene family, member F (in filopodia)##DQ892664|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##DQ896049|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##BC024287|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##BC014790|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##X72389|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##AK290826|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_002150|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##AK057510|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_001171993|HPD|3242|4-hydroxyphenylpyruvate dioxygenase##NM_002813|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##AK315389|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC002383|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004184|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##BC004213|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##DQ893594|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831432|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9##EU831524|PSMD9|5715|proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	0.998553	0.0	
chr1	21656518	21656665	reg1011255.p1	3.933	+	Z35307 D49471 HQ258359 TSC_hg19_v1_chr1_-_21616935 AK290656 AK309677 AK296486 BC117256 BC126257 NM_001397	-39657	-	AB031742 AB384697 AJ130828 AK304167 NM_001113349 TSC_hg19_v1_chr1_-_21616765	-39883	-	D43698 TSC_hg19_v1_chr1_-_21606025 BX648351 NM_001113347	-50508	-	X98272 TSC_hg19_v1_chr1_-_21671998 NM_001113348	15389	-	TSC_hg19_v1_chr1_+_21766643 AK299840 AK095602 NM_032264 AK314597 BC024011 AK292580 AL136890	110091	+	TSC_hg19_v1_chr1_+_21835843 NM_000478 NM_001127501 NM_001177520 AB209814	179268	+	Z35307|ECE1|1889|endothelin converting enzyme 1##D49471|ECE1|1889|endothelin converting enzyme 1##HQ258359|ECE1|1889|endothelin converting enzyme 1##AK290656|ECE1|1889|endothelin converting enzyme 1##AK309677|ECE1|1889|endothelin converting enzyme 1##AK296486|ECE1|1889|endothelin converting enzyme 1##BC117256|ECE1|1889|endothelin converting enzyme 1##BC126257|ECE1|1889|endothelin converting enzyme 1##NM_001397|ECE1|1889|endothelin converting enzyme 1##AB031742|ECE1|1889|endothelin converting enzyme 1##AJ130828|ECE1|1889|endothelin converting enzyme 1##AK304167|ECE1|1889|endothelin converting enzyme 1##NM_001113349|ECE1|1889|endothelin converting enzyme 1##D43698|ECE1|1889|endothelin converting enzyme 1##BX648351|ECE1|1889|endothelin converting enzyme 1##NM_001113347|ECE1|1889|endothelin converting enzyme 1##X98272|ECE1|1889|endothelin converting enzyme 1##NM_001113348|ECE1|1889|endothelin converting enzyme 1##AK299840|NBPF3|84224|neuroblastoma breakpoint family, member 3##AK095602|NBPF3|84224|neuroblastoma breakpoint family, member 3##NM_032264|NBPF3|84224|neuroblastoma breakpoint family, member 3##AK314597|NBPF3|84224|neuroblastoma breakpoint family, member 3##BC024011|NBPF3|84224|neuroblastoma breakpoint family, member 3##AK292580|NBPF3|84224|neuroblastoma breakpoint family, member 3##AL136890|NBPF3|84224|neuroblastoma breakpoint family, member 3##NM_000478|ALPL|249|alkaline phosphatase, liver/bone/kidney##NM_001127501|ALPL|249|alkaline phosphatase, liver/bone/kidney##NM_001177520|ALPL|249|alkaline phosphatase, liver/bone/kidney##AB209814|ALPL|249|alkaline phosphatase, liver/bone/kidney	0.999644	0.0	
chr12	57853375	57853552	reg1016154.p2	3.933	+	TSC_hg19_v1_chr12_+_57849089 NM_031479 AK075285 BC005161 AF412024	-4365	+	TSC_hg19_v1_chr12_+_57828511 AK314849 BC020693 NM_005538 X82540 BC130324 BC130326 AB590801	-24900	+	AB023219 AX775761 AX775763 TSC_hg19_v1_chr12_-_57824797	-28651	-	AK297899 NM_001160045 NM_001167609 NM_005269 X07384 AB239135 AB239136	479	+	AK301095 AK057573 AB030239 NM_001080156	18216	-	TSC_hg19_v1_chr12_-_57873391 AK092763 AX747713 NM_001080157	19931	-	NM_031479|INHBE|83729|inhibin, beta E##AK075285|INHBE|83729|inhibin, beta E##BC005161|INHBE|83729|inhibin, beta E##AF412024|INHBE|83729|inhibin, beta E##AK314849|INHBC|3626|inhibin, beta C##BC020693|INHBC|3626|inhibin, beta C##NM_005538|INHBC|3626|inhibin, beta C##BC130324|INHBC|3626|inhibin, beta C##BC130326|INHBC|3626|inhibin, beta C##AB023219|R3HDM2|22864|R3H domain containing 2##AX775761|R3HDM2|22864|R3H domain containing 2##AX775763|R3HDM2|22864|R3H domain containing 2##AK297899|GLI1|2735|GLI family zinc finger 1##NM_001160045|GLI1|2735|GLI family zinc finger 1##NM_001167609|GLI1|2735|GLI family zinc finger 1##NM_005269|GLI1|2735|GLI family zinc finger 1##X07384|GLI1|2735|GLI family zinc finger 1##AB239135|GLI1|2735|GLI family zinc finger 1##AB239136|GLI1|2735|GLI family zinc finger 1##AK301095|ARHGAP9|64333|Rho GTPase activating protein 9##AK057573|ARHGAP9|64333|Rho GTPase activating protein 9##AB030239|ARHGAP9|64333|Rho GTPase activating protein 9##NM_001080156|ARHGAP9|64333|Rho GTPase activating protein 9##AK092763|ARHGAP9|64333|Rho GTPase activating protein 9##NM_001080157|ARHGAP9|64333|Rho GTPase activating protein 9	0.0	0.16721	
chr17	27274620	27274800	reg1002413.p1	3.933	+	TSC_hg19_v1_chr17_-_27240983 AK024290	-33697	-	AX795344 TSC_hg19_v1_chr17_-_27229986 AX795345 AX795340 AX795338 AX795342 BC015582 AX795337 AX795341 AX795339 AX795335 AX795336 AK296017 AX795346 AX795343 AY358566 NM_144683	-44705	-	TSC_hg19_v1_chr17_-_27224717 NM_004475	-49998	-	BC110882 TSC_hg19_v1_chr17_-_27278336	3620	-	TSC_hg19_v1_chr17_-_27278483 AY030283 NM_001033561 NM_020889	3786	-	AB527210 TSC_hg19_v1_chr17_-_27333044 AK125377 AK223620 AY038048 NM_001098635 NM_178860 AF502129 AF502130	58315	-	AK024290|PHF12|57649|PHD finger protein 12##BC015582|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AK296017|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##AY358566|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_144683|DHRS13|147015|dehydrogenase/reductase (SDR family) member 13##NM_004475|FLOT2|2319|flotillin 2##BC110882|PHF12|57649|PHD finger protein 12##AY030283|PHF12|57649|PHD finger protein 12##NM_001033561|PHF12|57649|PHD finger protein 12##NM_020889|PHF12|57649|PHD finger protein 12##AK125377|SEZ6|124925|seizure related 6 homolog (mouse)##AK223620|SEZ6|124925|seizure related 6 homolog (mouse)##AY038048|SEZ6|124925|seizure related 6 homolog (mouse)##NM_001098635|SEZ6|124925|seizure related 6 homolog (mouse)##NM_178860|SEZ6|124925|seizure related 6 homolog (mouse)##AF502129|SEZ6|124925|seizure related 6 homolog (mouse)##AF502130|SEZ6|124925|seizure related 6 homolog (mouse)	0.513759	0.0	
chr17	28177249	28177328	reg1010291.p2	3.933	+	TSC_hg19_v1_chr17_-_28088446 BC011636	-88830	-	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-227437	-	AK096431 NM_032854	-228896	-	AK302745 AK303060 NM_001145053 AK299608	79608	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	79845	-	NM_198529 BX648689 BC137519	91416	+	BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5	0.0	0.0	
chr19	19779275	19779455	reg1006953.p2	3.933	+	TSC_hg19_v1_chr19_-_19774501 NM_020410	-4856	-	AB058728 AB385506 TSC_hg19_v1_chr19_-_19774486 AK056420	-4881	-	TSC_hg19_v1_chr19_-_19754452 NM_016573	-24910	-	AK097169 BC094808 AY149174 NM_033204 BC119680 BC119681	292	+	AB464375 BC136323 AB021644 AK074832 TSC_hg19_v1_chr19_-_19843919 AK125668 NM_021030	64482	-	BC034236 AK289657 TSC_hg19_v1_chr19_-_19887212 BC037856	107840	-	NM_020410|ATP13A1|57130|ATPase type 13A1##AB058728|ATP13A1|57130|ATPase type 13A1##AK056420|ATP13A1|57130|ATPase type 13A1##NM_016573|GMIP|51291|GEM interacting protein##AK097169|ZNF101|94039|zinc finger protein 101##BC094808|ZNF101|94039|zinc finger protein 101##AY149174|ZNF101|94039|zinc finger protein 101##NM_033204|ZNF101|94039|zinc finger protein 101##BC119680|ZNF101|94039|zinc finger protein 101##BC119681|ZNF101|94039|zinc finger protein 101##BC136323|ZNF14|7561|zinc finger protein 14##AB021644|ZNF14|7561|zinc finger protein 14##AK074832|ZNF14|7561|zinc finger protein 14##NM_021030|ZNF14|7561|zinc finger protein 14##BC034236|LOC284440|284440|uncharacterized LOC284440##AK289657|LOC284440|284440|uncharacterized LOC284440##BC037856|LOC284440|284440|uncharacterized LOC284440	0.0	0.0	
chr2	208937078	208937235	reg1013612.p1	3.933	+	TSC_hg19_v1_chr2_-_208890252 BX648983 NM_001080475	-46892	-	U43318 AB043702 NM_003468	-303060	-	TSC_hg19_v1_chr2_+_208576466 BC067253	-360656	+	HQ258094 U66583 BC117338 BC117340 NM_006891	52040	-	AB590655 U66582 BC074954 BC074955 NM_020989	57324	-	BC074944 BC074945 BC117384 BC117388 NM_005210	73720	-	BX648983|PLEKHM3|389072|pleckstrin homology domain containing, family M, member 3##NM_001080475|PLEKHM3|389072|pleckstrin homology domain containing, family M, member 3##U43318|FZD5|7855|frizzled family receptor 5##AB043702|FZD5|7855|frizzled family receptor 5##NM_003468|FZD5|7855|frizzled family receptor 5##BC067253|CCNYL1|151195|cyclin Y-like 1##HQ258094|CRYGD|1421|crystallin, gamma D##U66583|CRYGD|1421|crystallin, gamma D##BC117338|CRYGD|1421|crystallin, gamma D##BC117340|CRYGD|1421|crystallin, gamma D##NM_006891|CRYGD|1421|crystallin, gamma D##U66582|CRYGC|1420|crystallin, gamma C##BC074954|CRYGC|1420|crystallin, gamma C##BC074955|CRYGC|1420|crystallin, gamma C##NM_020989|CRYGC|1420|crystallin, gamma C##BC074944|CRYGB|1419|crystallin, gamma B##BC074945|CRYGB|1419|crystallin, gamma B##BC117384|CRYGB|1419|crystallin, gamma B##BC117388|CRYGB|1419|crystallin, gamma B##NM_005210|CRYGB|1419|crystallin, gamma B	0.0	0.948498	CTCF.p2:44:0.948
chr3	51232173	51232272	reg1013422.p1	3.933	+	AY254099 NM_004947 AY145303	-519540	+	TSC_hg19_v1_chr3_+_50654932 AK313565 U43784 AB528893 EU832627 EU832702 CU675717 AB451303 AB451434	-577290	+	BC001662 BC010407 TSC_hg19_v1_chr3_+_50654611 BC007591 U09578	-577595	+	NM_006010 TSC_hg19_v1_chr3_+_51422691	190469	+	TSC_hg19_v1_chr3_+_51422721 BC113588 BC113590 AK292243 BC007282 BT007110 EU832655 EU832733 BC033055	190559	+	NM_013286 TSC_hg19_v1_chr3_+_51428706	196480	+	AY254099|DOCK3|1795|dedicator of cytokinesis 3##NM_004947|DOCK3|1795|dedicator of cytokinesis 3##AY145303|DOCK3|1795|dedicator of cytokinesis 3##AK313565|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##U43784|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##EU832627|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##EU832702|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##AB451303|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##AB451434|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC001662|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC010407|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##BC007591|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##U09578|MAPKAPK3|7867|mitogen-activated protein kinase-activated protein kinase 3##NM_006010|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC113588|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC113590|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##AK292243|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC007282|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BT007110|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##EU832655|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##EU832733|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##BC033055|MANF|7873|mesencephalic astrocyte-derived neurotrophic factor##NM_013286|RBM15B|29890|RNA binding motif protein 15B	0.994629	0.0	
chr5	76039821	76039933	reg1015637.p1	3.933	+	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	-27921	+	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	-120732	-	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	-340761	+	NM_005242 BC018130 TSC_hg19_v1_chr5_+_76114854 U34038	74975	+	TSC_hg19_v1_chr5_+_76114883 BC012453 AY336105 BT009856 CU676194 CU680330 DQ890966 DQ894139	75067	+	BC022320 NM_130772	105948	+	AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_005242|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC018130|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##U34038|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC012453|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##AY336105|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BT009856|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ890966|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##DQ894139|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC022320|S100Z|170591|S100 calcium binding protein Z##NM_130772|S100Z|170591|S100 calcium binding protein Z	1.996463	0.0	denovo_WM_7:0:0.414	denovo_WM_7:0:0.493	denovo_WM_7:-15:0.892
chr6	27731250	27731363	reg1017029.p1	3.933	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-290605	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-374751	+	AF352327 AF336874 BC107050 NM_032030	-438748	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	44417	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	44635	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	46476	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.999366	0.0	denovo_WM_7:103:0.586	denovo_WM_7:104:0.293
chr8	43012039	43012130	reg1015230.p2	3.933	+	TSC_hg19_v1_chr8_+_42995654 BC042037	-16437	+	TSC_hg19_v1_chr8_+_42995639 AK304441	-16451	+	TSC_hg19_v1_chr8_+_42995606 NM_152419	-16504	+	AY462869 AY462870 NM_001002920 NM_001005365 AB464430	135521	+	TSC_hg19_v1_chr8_+_48173495 NM_001080394	5161411	+	TSC_hg19_v1_chr8_+_48173521 AK303579	5161435	+	BC042037|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AK304441|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##NM_152419|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase##AY462869|POTEA|340441|POTE ankyrin domain family, member A##AY462870|POTEA|340441|POTE ankyrin domain family, member A##NM_001002920|POTEA|340441|POTE ankyrin domain family, member A##NM_001005365|POTEA|340441|POTE ankyrin domain family, member A##NM_001080394|KIAA0146|23514|KIAA0146##AK303579|KIAA0146|23514|KIAA0146	0.0	0.0	
chr10	94025757	94025854	reg1002993.p2	3.932	+	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	-22786	-	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-342113	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-342289	+	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	25031	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	25249	+	AK302578 AK093287 AK316407 AX748033 NM_001165946	231688	-	AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK302578|IDE|3416|insulin-degrading enzyme##AK093287|IDE|3416|insulin-degrading enzyme##AK316407|IDE|3416|insulin-degrading enzyme##NM_001165946|IDE|3416|insulin-degrading enzyme	0.0	0.0	
chr1	1773857	1773976	reg1014500.p1	3.932	+	TSC_hg19_v1_chr1_-_1711471 AF250320 NM_001198994	-62436	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	-63647	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	-64030	-	TSC_hg19_v1_chr1_-_1822437 BC004186 X04526 AK295607 BC140714 BC171773	48536	-	TSC_hg19_v1_chr1_-_1822496 BC008991	48579	-	AK312614 TSC_hg19_v1_chr1_-_1822502	48586	-	AF250320|NADK|65220|NAD kinase##NM_001198994|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC004186|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##X04526|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##BC140714|CDK11B|984|cyclin-dependent kinase 11B##BC171773|CDK11B|984|cyclin-dependent kinase 11B##BC008991|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1##AK312614|GNB1|2782|guanine nucleotide binding protein (G protein), beta polypeptide 1	0.997593	0.0	denovo_WM_7:-33:0.449	denovo_WM_7:-34:0.449
chr12	83398209	83398389	reg1000683.p1	3.932	+	TSC_hg19_v1_chr12_+_83081158 AK299771 BC093852 BC143378 BC093854 AK315285 AB463319 AM393141	-317038	+	TSC_hg19_v1_chr12_+_83080911 AL834509 NM_152588	-317382	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	-317599	+	AK291207 AK022853 TSC_hg19_v1_chr12_-_85306547	1908244	-	TSC_hg19_v1_chr12_-_85306575 BC022253 BC070040	1908273	-	AK294945 TSC_hg19_v1_chr12_-_85306581 NM_001146335 NM_018057 NM_182767	1908293	-	AK299771|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093852|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC143378|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC093854|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK315285|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AM393141|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AL834509|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##NM_152588|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##AK291207|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##AK022853|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##BC022253|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##BC070040|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##AK294945|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_001146335|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_018057|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15##NM_182767|SLC6A15|55117|solute carrier family 6 (neutral amino acid transporter), member 15	0.092615	0.0	
chr16	48395068	48395169	reg1011640.p1	3.932	+	AK074775 AK127125 TSC_hg19_v1_chr16_+_48278216 BC093910 BC093912 BC143246 AK027544 AK294779	-116848	+	TSC_hg19_v1_chr16_+_48278210 AJ548761 NM_031490	-116924	+	AF367202 AF411579 NM_032583 NM_145186	-126031	-	BC042550 TSC_hg19_v1_chr16_-_48399765	4642	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	4673	-	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	24134	-	AK074775|LONP2|83752|lon peptidase 2, peroxisomal##AK127125|LONP2|83752|lon peptidase 2, peroxisomal##BC093910|LONP2|83752|lon peptidase 2, peroxisomal##BC093912|LONP2|83752|lon peptidase 2, peroxisomal##BC143246|LONP2|83752|lon peptidase 2, peroxisomal##AK027544|LONP2|83752|lon peptidase 2, peroxisomal##AK294779|LONP2|83752|lon peptidase 2, peroxisomal##AJ548761|LONP2|83752|lon peptidase 2, peroxisomal##NM_031490|LONP2|83752|lon peptidase 2, peroxisomal##AF367202|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##AF411579|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_032583|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##NM_145186|ABCC11|85320|ATP-binding cassette, sub-family C (CFTR/MRP), member 11##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)	0.0	0.0	
chr5	176076366	176076462	reg1011726.p2	3.932	+	TSC_hg19_v1_chr5_+_176074497 AK024427 BC067105 BC010405 AF174603 CU679699 CU688248	-1862	+	NM_001006616 NM_012171 NM_130465 TSC_hg19_v1_chr5_+_176074470 AY037146	-1984	+	NM_001099408	-18732	+	TSC_hg19_v1_chr5_+_176237521 AK131380 NM_133369 BC157824	161141	+	U51333 BC028129 NM_002115	249909	-	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	357174	-	AK024427|TSPAN17|26262|tetraspanin 17##BC067105|TSPAN17|26262|tetraspanin 17##BC010405|TSPAN17|26262|tetraspanin 17##AF174603|TSPAN17|26262|tetraspanin 17##NM_001006616|TSPAN17|26262|tetraspanin 17##NM_012171|TSPAN17|26262|tetraspanin 17##NM_130465|TSPAN17|26262|tetraspanin 17##AY037146|TSPAN17|26262|tetraspanin 17##NM_001099408|EIF4E1B|253314|eukaryotic translation initiation factor 4E family member 1B##AK131380|UNC5A|90249|unc-5 homolog A (C. elegans)##NM_133369|UNC5A|90249|unc-5 homolog A (C. elegans)##BC157824|UNC5A|90249|unc-5 homolog A (C. elegans)##U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1	0.988318	0.0	denovo_WM_7:22:0.840
chr8	34708014	34708111	reg1012392.p1	3.932	+	TSC_hg19_v1_chr8_-_33457497 AB158288 AK055704	-1250567	-	AB237597 AB103376 AY902194 BC001613 NM_024025 TSC_hg19_v1_chr8_-_33457473	-1250603	-	TSC_hg19_v1_chr8_-_33457295 BC067804	-1250775	-	TSC_hg19_v1_chr8_+_35092994 AY358147 NM_080872	384925	+	NM_001031836 AK302391 BC028701	1933808	+	TSC_hg19_v1_chr8_-_37457377 AK025743	2749306	-	AB158288|DUSP26|78986|dual specificity phosphatase 26 (putative)##AK055704|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB237597|DUSP26|78986|dual specificity phosphatase 26 (putative)##AB103376|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY902194|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC001613|DUSP26|78986|dual specificity phosphatase 26 (putative)##NM_024025|DUSP26|78986|dual specificity phosphatase 26 (putative)##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)##AY358147|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_080872|UNC5D|137970|unc-5 homolog D (C. elegans)##NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##AK025743|LOC157860|157860|uncharacterized LOC157860	0.913794	0.0	denovo_WM_7:10:0.494	denovo_WM_7:-16:0.281
chr8	8610743	8610830	reg1009288.p2	3.932	+	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	-51088	+	AK122582 NM_001080826	-371564	-	TSC_hg19_v1_chr8_-_8175862 AF075060	-434898	-	TSC_hg19_v1_chr8_-_8751060 NM_004225	140152	-	NM_153332 AL137679 TSC_hg19_v1_chr8_+_8860416	249579	+	TSC_hg19_v1_chr8_+_8860443 AK291062 AK226180 AY310909 BC035279 AB527653 DQ890841 DQ893996	249719	+	AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1##NM_153332|ERI1|90459|exoribonuclease 1##AL137679|ERI1|90459|exoribonuclease 1##AK291062|ERI1|90459|exoribonuclease 1##AK226180|ERI1|90459|exoribonuclease 1##AY310909|ERI1|90459|exoribonuclease 1##BC035279|ERI1|90459|exoribonuclease 1##DQ890841|ERI1|90459|exoribonuclease 1##DQ893996|ERI1|90459|exoribonuclease 1	0.0	0.0	
chr1	1697896	1698048	reg1014285.p2	3.931	+	AK296722 NM_001198995	-7892	-	AL049665 NM_001199787 NM_182838 TSC_hg19_v1_chr1_-_1677454 BC110653	-20511	-	TSC_hg19_v1_chr1_-_1655767 AK303446 AF067518 AF067519 AF067520 AF067521 AF067522 AF067523 AK301495 AK304679 BC009375 AF067512 AF067513 AF067514 AF067515 AF067516 AF067517 AK303451 NM_033486 NM_033487 NM_033488 NM_033489 NM_033492 NM_033493 U04816 U04817 U04818 U04824 U07704 U07705 NM_024011 NM_033529	-42196	-	TSC_hg19_v1_chr1_-_1709864 AK291728 AK290161 AK023114 NM_023018	11914	-	BC001709 TSC_hg19_v1_chr1_-_1710295 AK291599 NM_001198993	12297	-	TSC_hg19_v1_chr1_-_1711471 AF250320 NM_001198994	13508	-	AK296722|NADK|65220|NAD kinase##NM_001198995|NADK|65220|NAD kinase##AL049665|SLC35E2|9906|solute carrier family 35, member E2##NM_001199787|SLC35E2|9906|solute carrier family 35, member E2##NM_182838|SLC35E2|9906|solute carrier family 35, member E2##BC110653|SLC35E2B|728661|solute carrier family 35, member E2B##AK303446|CDK11B|984|cyclin-dependent kinase 11B##AF067518|CDK11A|728642|cyclin-dependent kinase 11A##AF067519|CDK11A|728642|cyclin-dependent kinase 11A##AF067520|CDK11A|728642|cyclin-dependent kinase 11A##AF067521|CDK11A|728642|cyclin-dependent kinase 11A##AF067522|CDK11A|728642|cyclin-dependent kinase 11A##AF067523|CDK11A|728642|cyclin-dependent kinase 11A##AK301495|CDK11B|984|cyclin-dependent kinase 11B##AK304679|CDK11B|984|cyclin-dependent kinase 11B##BC009375|CDK11B|984|cyclin-dependent kinase 11B##AF067512|CDK11B|984|cyclin-dependent kinase 11B##AF067513|CDK11B|984|cyclin-dependent kinase 11B##AF067514|CDK11B|984|cyclin-dependent kinase 11B##AF067515|CDK11B|984|cyclin-dependent kinase 11B##AF067516|CDK11B|984|cyclin-dependent kinase 11B##AF067517|CDK11B|984|cyclin-dependent kinase 11B##AK303451|CDK11B|984|cyclin-dependent kinase 11B##NM_033486|CDK11B|984|cyclin-dependent kinase 11B##NM_033487|CDK11B|984|cyclin-dependent kinase 11B##NM_033488|CDK11B|984|cyclin-dependent kinase 11B##NM_033489|CDK11B|984|cyclin-dependent kinase 11B##NM_033492|CDK11B|984|cyclin-dependent kinase 11B##NM_033493|CDK11B|984|cyclin-dependent kinase 11B##U04816|CDK11B|984|cyclin-dependent kinase 11B##U04817|CDK11B|984|cyclin-dependent kinase 11B##U04818|CDK11B|984|cyclin-dependent kinase 11B##U04824|CDK11B|984|cyclin-dependent kinase 11B##U07704|CDK11A|728642|cyclin-dependent kinase 11A##U07705|CDK11A|728642|cyclin-dependent kinase 11A##NM_024011|CDK11A|728642|cyclin-dependent kinase 11A##NM_033529|CDK11A|728642|cyclin-dependent kinase 11A##AK291728|NADK|65220|NAD kinase##AK290161|NADK|65220|NAD kinase##AK023114|NADK|65220|NAD kinase##NM_023018|NADK|65220|NAD kinase##BC001709|NADK|65220|NAD kinase##AK291599|NADK|65220|NAD kinase##NM_001198993|NADK|65220|NAD kinase##AF250320|NADK|65220|NAD kinase##NM_001198994|NADK|65220|NAD kinase	1.307668	0.0	
chr17	47418731	47418817	reg1004970.p1	3.931	+	BC029931 AJ457189 NM_001143804 NM_178500 TSC_hg19_v1_chr17_-_47308163	-110631	-	TSC_hg19_v1_chr17_+_47288070 BC007780 AB463387 AM392779 AM392922 DQ893090 DQ896362	-130697	+	NM_001198754	-130839	-	CR933680 TSC_hg19_v1_chr17_-_47439487 BC034987 AK292667 NM_001145365 AB023141 BC152440 NM_014897	20806	-	BC095460 TSC_hg19_v1_chr17_-_47492215	73441	-	TSC_hg19_v1_chr17_-_47492243 S85655 BC013401 AK307767 AK223181 AK290766 AK302258 AK312649 NM_002634	73474	-	BC029931|PHOSPHO1|162466|phosphatase, orphan 1##AJ457189|PHOSPHO1|162466|phosphatase, orphan 1##NM_001143804|PHOSPHO1|162466|phosphatase, orphan 1##NM_178500|PHOSPHO1|162466|phosphatase, orphan 1##BC007780|ABI3|51225|ABI family, member 3##AM392779|ABI3|51225|ABI family, member 3##AM392922|ABI3|51225|ABI family, member 3##DQ893090|ABI3|51225|ABI family, member 3##DQ896362|ABI3|51225|ABI family, member 3##NM_001198754|GNGT2|2793|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2##CR933680|ZNF652|22834|zinc finger protein 652##BC034987|ZNF652|22834|zinc finger protein 652##AK292667|ZNF652|22834|zinc finger protein 652##NM_001145365|ZNF652|22834|zinc finger protein 652##AB023141|ZNF652|22834|zinc finger protein 652##BC152440|ZNF652|22834|zinc finger protein 652##NM_014897|ZNF652|22834|zinc finger protein 652##BC095460|PHB|5245|prohibitin##S85655|PHB|5245|prohibitin##BC013401|PHB|5245|prohibitin##AK307767|PHB|5245|prohibitin##AK223181|PHB|5245|prohibitin##AK290766|PHB|5245|prohibitin##AK302258|PHB|5245|prohibitin##AK312649|PHB|5245|prohibitin##NM_002634|PHB|5245|prohibitin	1.98056	0.0	denovo_WM_7:-83:0.849
chr7	81779639	81779719	reg1011369.p2	3.931	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-380305	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1231005	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1231245	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	293167	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	293401	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	1012190	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	2.340123	0.0	denovo_WM_7:67:0.314	denovo_WM_7:68:0.314	denovo_WM_7:69:0.314	denovo_WM_7:-78:0.220	denovo_WM_7:-94:0.326	denovo_WM_7:-97:0.520
chr10	12331732	12331861	reg1014910.p1	3.930	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-93570	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-93597	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-93614	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	59779	+	TSC_hg19_v1_chr10_+_12391709 BC035745	59921	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	59981	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	1.992625	0.0	denovo_WM_7:-49:0.237	denovo_WM_7:-50:0.203	denovo_WM_7:-69:0.210	denovo_WM_7:-70:0.243
chr12	14436573	14436698	reg1013714.p1	3.930	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-303649	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-1086906	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-1086918	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	82000	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	101637	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	283974	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.101811	0.0	
chr19	2681755	2681870	reg1010740.p2	3.930	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-205574	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-224852	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-224876	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	20883	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	20930	-	AK124445 TSC_hg19_v1_chr19_-_2717420	35537	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.177789	0.0	
chr3	98250556	98250673	reg1016124.p1	3.930	+	TSC_hg19_v1_chr3_-_98241835 NM_001040181 NM_001040182 NM_001040183 NM_001040199 NM_001040200 NM_019895	-8748	-	TSC_hg19_v1_chr3_-_98241770 BC013610 AK075367	-8849	-	BC022551 TSC_hg19_v1_chr3_-_98241739 BC095441 AF161522	-8880	-	AK313375 BC101779 BC101781 BC069437 CU686810 NM_005290	195	+	AK223481 BC023554 BC017210 BC023551 TSC_hg19_v1_chr3_-_98312446 AK299692 AK290140 NM_000097	61805	-	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	200631	+	NM_001040181|CLDND1|56650|claudin domain containing 1##NM_001040182|CLDND1|56650|claudin domain containing 1##NM_001040183|CLDND1|56650|claudin domain containing 1##NM_001040199|CLDND1|56650|claudin domain containing 1##NM_001040200|CLDND1|56650|claudin domain containing 1##NM_019895|CLDND1|56650|claudin domain containing 1##BC013610|CLDND1|56650|claudin domain containing 1##AK075367|CLDND1|56650|claudin domain containing 1##BC022551|CLDND1|56650|claudin domain containing 1##BC095441|CLDND1|56650|claudin domain containing 1##AF161522|CLDND1|56650|claudin domain containing 1##AK313375|GPR15|2838|G protein-coupled receptor 15##BC101779|GPR15|2838|G protein-coupled receptor 15##BC101781|GPR15|2838|G protein-coupled receptor 15##BC069437|GPR15|2838|G protein-coupled receptor 15##NM_005290|GPR15|2838|G protein-coupled receptor 15##AK223481|CPOX|1371|coproporphyrinogen oxidase##BC023554|CPOX|1371|coproporphyrinogen oxidase##BC017210|CPOX|1371|coproporphyrinogen oxidase##BC023551|CPOX|1371|coproporphyrinogen oxidase##AK299692|CPOX|1371|coproporphyrinogen oxidase##AK290140|CPOX|1371|coproporphyrinogen oxidase##NM_000097|CPOX|1371|coproporphyrinogen oxidase##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	0.0	0.0	
chr6	15325086	15325261	reg1016670.p2	3.930	+	TSC_hg19_v1_chr6_+_15249113 AK303610	-76060	+	BC033996 TSC_hg19_v1_chr6_-_15248900	-76272	-	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	-78761	+	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	338004	-	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	338117	-	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	804129	+	AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein	1.245305	0.0	denovo_WM_7:-84:0.416	denovo_WM_7:-85:0.371
chr6	3076047	3076161	reg1015969.p1	3.930	+	AK314176 TSC_hg19_v1_chr6_+_3064200 AB208926	-11938	+	TSC_hg19_v1_chr6_+_3000111 NM_000904 AK311746 AK056981 J02888	-75976	+	AK094983 NM_001195291 NM_004568	-103706	-	BC126254 BC126256 HQ258488 NM_003804 U50062 AK304701	960	+	TSC_hg19_v1_chr6_+_3118961 AK297518 NM_004332 AK314909 AL832502 AJ617684 X81372	42847	+	AY159127 CR541958 CU674602 AB528583 DQ892343 DQ895718 BC001194 TSC_hg19_v1_chr6_-_3157779 BC018780 X79535 AK308772 AK312621 NM_001069	81642	-	AK314176|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AB208926|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##NM_000904|NQO2|4835|NAD(P)H dehydrogenase, quinone 2##AK311746|NQO2|4835|NAD(P)H dehydrogenase, quinone 2##AK056981|NQO2|4835|NAD(P)H dehydrogenase, quinone 2##J02888|NQO2|4835|NAD(P)H dehydrogenase, quinone 2##AK094983|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##NM_001195291|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##NM_004568|SERPINB6|5269|serpin peptidase inhibitor, clade B (ovalbumin), member 6##BC126254|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##BC126256|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##HQ258488|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##NM_003804|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##U50062|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AK304701|RIPK1|8737|receptor (TNFRSF)-interacting serine-threonine kinase 1##AK297518|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##NM_004332|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AK314909|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AL832502|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AJ617684|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##X81372|BPHL|670|biphenyl hydrolase-like (serine hydrolase)##AY159127|TUBB2A|7280|tubulin, beta 2A class IIa##CR541958|TUBB2A|7280|tubulin, beta 2A class IIa##DQ892343|TUBB2A|7280|tubulin, beta 2A class IIa##DQ895718|TUBB2A|7280|tubulin, beta 2A class IIa##BC001194|TUBB2A|7280|tubulin, beta 2A class IIa##BC018780|TUBB2A|7280|tubulin, beta 2A class IIa##X79535|TUBB2A|7280|tubulin, beta 2A class IIa##AK312621|TUBB2A|7280|tubulin, beta 2A class IIa##NM_001069|TUBB2A|7280|tubulin, beta 2A class IIa	0.999655	0.0	denovo_WM_7:-20:0.298	denovo_WM_7:-21:0.298	denovo_WM_7:-22:0.298
chr6_qbl_hap6	2099214	2099326	reg1011566.p1	3.930	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.795756	0.0	denovo_WM_7:17:0.404	denovo_WM_7:32:0.517
chr10	120968849	120969024	reg1006601.p1	3.929	+	TSC_hg19_v1_chr10_+_120967098 BC018116 BC064506 BC064506 NM_005308 L15388 AK309761 AK309761 AK313012 AB590773	-1675	+	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	-30589	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	-30633	-	NM_002925	327108	-	AB587433 BC009361 TSC_hg19_v1_chr10_-_121302217 AK290773 NM_001005339	333254	-	AB527493 AY633610 AK295243 M96954 TSC_hg19_v1_chr10_-_121356143 AK290984 AK291239	387172	-	BC018116|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##NM_005308|GRK5|2869|G protein-coupled receptor kinase 5##L15388|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK313012|GRK5|2869|G protein-coupled receptor kinase 5##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##NM_002925|RGS10|6001|regulator of G-protein signaling 10##BC009361|RGS10|6001|regulator of G-protein signaling 10##AK290773|RGS10|6001|regulator of G-protein signaling 10##NM_001005339|RGS10|6001|regulator of G-protein signaling 10##AY633610|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK295243|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##M96954|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK290984|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK291239|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1	1.81273	0.0	denovo_WM_7:70:0.692	denovo_WM_7:85:0.681
chr10	126339511	126339610	reg1013162.p2	3.929	+	BC113629 BC113631 NM_001167880 NM_022126 TSC_hg19_v1_chr10_+_126150391 BC110344 BC073172 AK055532 BC007324 HQ258160	-189139	+	NM_001146340 TSC_hg19_v1_chr10_-_126138606	-200983	-	TSC_hg19_v1_chr10_-_126107493 CR749808 NM_000274 NM_001171814	-232042	-	D50930 TSC_hg19_v1_chr10_-_126432660	93084	-	TSC_hg19_v1_chr10_-_126432823 BC031654	93256	-	TSC_hg19_v1_chr10_-_126432908 NM_014661	93351	-	BC113629|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC113631|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_001167880|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_022126|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC110344|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC073172|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##AK055532|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##BC007324|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##HQ258160|LHPP|64077|phospholysine phosphohistidine inorganic pyrophosphate phosphatase##NM_001146340|NKX1-2|390010|NK1 homeobox 2##CR749808|OAT|4942|ornithine aminotransferase##NM_000274|OAT|4942|ornithine aminotransferase##NM_001171814|OAT|4942|ornithine aminotransferase##D50930|FAM53B|9679|family with sequence similarity 53, member B##BC031654|FAM53B|9679|family with sequence similarity 53, member B##NM_014661|FAM53B|9679|family with sequence similarity 53, member B	0.139199	0.0	
chr10	94661561	94661682	reg1009825.p1	3.929	+	AK293857 NM_019053 AF220217 TSC_hg19_v1_chr10_+_94608276 AL832501 EF571007 AK315544 BC028395 CU688490 EU832839 GQ129240	-53364	+	NM_001013848	-67152	+	TSC_hg19_v1_chr10_+_94449711 NM_002729 AK309463 AK314891 BC014336 BC015110 L16499 X67235 AB528006 BC050638 EU446478	-211912	+	AY356349 NM_183374	159399	+	AK027560 NM_057157	171610	+	AK075374 NM_000783 AF005418	172035	+	AK293857|EXOC6|54536|exocyst complex component 6##NM_019053|EXOC6|54536|exocyst complex component 6##AF220217|EXOC6|54536|exocyst complex component 6##AL832501|EXOC6|54536|exocyst complex component 6##EF571007|EXOC6|54536|exocyst complex component 6##AK315544|EXOC6|54536|exocyst complex component 6##BC028395|EXOC6|54536|exocyst complex component 6##EU832839|EXOC6|54536|exocyst complex component 6##GQ129240|EXOC6|54536|exocyst complex component 6##NM_001013848|EXOC6|54536|exocyst complex component 6##NM_002729|HHEX|3087|hematopoietically expressed homeobox##AK314891|HHEX|3087|hematopoietically expressed homeobox##BC014336|HHEX|3087|hematopoietically expressed homeobox##BC015110|HHEX|3087|hematopoietically expressed homeobox##L16499|HHEX|3087|hematopoietically expressed homeobox##X67235|HHEX|3087|hematopoietically expressed homeobox##BC050638|HHEX|3087|hematopoietically expressed homeobox##EU446478|HHEX|3087|hematopoietically expressed homeobox##AY356349|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##NM_183374|CYP26C1|340665|cytochrome P450, family 26, subfamily C, polypeptide 1##AK027560|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_057157|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AK075374|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##NM_000783|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1##AF005418|CYP26A1|1592|cytochrome P450, family 26, subfamily A, polypeptide 1	0.994878	0.0	denovo_WM_7:-20:0.909
chr14	23246762	23246866	reg1012971.p1	3.929	+	BC112331 NM_005015 TSC_hg19_v1_chr14_+_23235896 AK294849 AK298249 BC001669 X80695 BX248295 BX248001	-10969	+	TSC_hg19_v1_chr14_+_23067208 AK022878 NM_022060 AX721056 BC024779 AK298127 AK301315 AK293198	-179625	+	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	-188680	-	TSC_hg19_v1_chr14_-_23284568 AK025377	37765	-	BC003062 BC010107 TSC_hg19_v1_chr14_-_23284645 AK314351 AK301219	37818	-	AB020532 BX161519 NM_001126105	38244	-	BC112331|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##NM_005015|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK294849|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK298249|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BC001669|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##X80695|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248295|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##BX248001|OXA1L|5018|oxidase (cytochrome c) assembly 1-like##AK022878|ABHD4|63874|abhydrolase domain containing 4##NM_022060|ABHD4|63874|abhydrolase domain containing 4##BC024779|ABHD4|63874|abhydrolase domain containing 4##AK298127|ABHD4|63874|abhydrolase domain containing 4##AK301315|ABHD4|63874|abhydrolase domain containing 4##AK293198|ABHD4|63874|abhydrolase domain containing 4##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1##AK025377|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC003062|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BC010107|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK314351|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AK301219|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##AB020532|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##BX161519|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7##NM_001126105|SLC7A7|9056|solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	0.0	0.642283	CTCF.p2:30:0.642
chr14	91511502	91511670	reg1014951.p1	3.929	+	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-228821	-	AB527232 TSC_hg19_v1_chr14_-_91282750	-228888	-	TSC_hg19_v1_chr14_+_90863372 BC011834 BC047523 U16851 BC000454 BC008597 AK289937 M27319	-648159	+	TSC_hg19_v1_chr14_-_91526731 CU677851	15168	-	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	15384	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	68819	+	NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##BC011834|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC047523|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##U16851|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC000454|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008597|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AK289937|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##M27319|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159	0.99033	0.0	denovo_WM_7:26:0.237	denovo_WM_7:27:0.237	denovo_WM_7:28:0.237	denovo_WM_7:29:0.237
chr19	54605886	54605974	reg1009368.p1	3.929	+	TSC_hg19_v1_chr19_-_54604114 AF391163 AF474153 DQ893697 DQ894733 AF391162 AK091111 AX746784 AK311307 AK130199 AF391164 AF474152 AF251702 NM_130771 NM_133168 NM_133169 NM_206818	-1811	-	DQ479398 NM_001135686	-21297	-	FN398145 FJ584316 FJ584317 FJ584318 FJ584319 FJ584320 FJ882051 DQ479397 BC100942 BC100943 AX721201 AY358542 NM_198481	-38810	-	TSC_hg19_v1_chr19_+_54606162 AF070653 BC061644 NM_004542 AK289489 BC011021 BC022369 AF044955 CR542143	236	+	NM_015629 DQ426885 AY040822 BC117389	12897	+	AK310647 AF052052 AK310627 NM_013342	13109	-	AF391163|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474153|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ893697|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ894733|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391162|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK091111|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK311307|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AK130199|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF391164|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF474152|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##AF251702|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_130771|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133168|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_133169|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##NM_206818|OSCAR|126014|osteoclast associated, immunoglobulin-like receptor##DQ479398|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##NM_001135686|TARM1|441864|T cell-interacting, activating receptor on myeloid cells 1##FN398145|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584316|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584317|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584318|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584319|VSTM1|284415|V-set and transmembrane domain containing 1##FJ584320|VSTM1|284415|V-set and transmembrane domain containing 1##FJ882051|VSTM1|284415|V-set and transmembrane domain containing 1##DQ479397|VSTM1|284415|V-set and transmembrane domain containing 1##BC100942|VSTM1|284415|V-set and transmembrane domain containing 1##BC100943|VSTM1|284415|V-set and transmembrane domain containing 1##AY358542|VSTM1|284415|V-set and transmembrane domain containing 1##NM_198481|VSTM1|284415|V-set and transmembrane domain containing 1##AF070653|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC061644|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##NM_004542|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AK289489|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC011021|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##BC022369|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##AF044955|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##CR542143|NDUFA3|4696|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa##NM_015629|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AY040822|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##BC117389|PRPF31|26121|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)##AK310647|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AF052052|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##AK310627|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)##NM_013342|TFPT|29844|TCF3 (E2A) fusion partner (in childhood Leukemia)	0.0	0.0	
chr2	101680314	101680422	reg1015116.p2	3.929	+	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-61646	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-243602	+	TSC_hg19_v1_chr2_+_101179454 NM_024065 BC001021 AK300827 AF110511 AF267853	-500932	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	87415	-	TSC_hg19_v1_chr2_+_101869347 NM_017546	188969	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	189024	+	NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_024065|PDCL3|79031|phosducin-like 3##BC001021|PDCL3|79031|phosducin-like 3##AK300827|PDCL3|79031|phosducin-like 3##AF110511|PDCL3|79031|phosducin-like 3##AF267853|PDCL3|79031|phosducin-like 3##AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29	0.0	0.0	
chr7	95237824	95237958	reg1016102.p2	3.929	+	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	-12028	-	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	-122598	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-173530	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	164017	+	CU675453 DQ892851 DQ896098 Y17571 AK294629 TSC_hg19_v1_chr7_-_95951381 BC006566 AJ496569 AK000766 AK222864 AF118838 NM_001160210 NM_014251	713511	-	BC140736 BC171740 AK124274 NM_001201450 NM_001201451	894936	-	BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##DQ892851|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##DQ896098|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##Y17571|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK294629|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC006566|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AJ496569|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK000766|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK222864|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AF118838|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_001160210|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_014251|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC140736|FLJ42280|401388|putative uncharacterized protein FLJ42280##BC171740|FLJ42280|401388|putative uncharacterized protein FLJ42280##AK124274|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201450|FLJ42280|401388|putative uncharacterized protein FLJ42280##NM_001201451|FLJ42280|401388|putative uncharacterized protein FLJ42280	1.090272	0.0	denovo_WM_7:-9:0.271	denovo_WM_7:99:0.560
chr8	110564260	110564385	reg1017423.p1	3.929	+	NM_004215 BC005249 BC022506 AK308950 AB007619 AF006265 AY515724	-11912	+	TSC_hg19_v1_chr8_+_110551942 NM_198120 AK290651 BC017729	-12337	+	AY219181 NM_177531 BC093096 AK128617	-189593	+	AK297182 TSC_hg19_v1_chr8_-_110620232	55904	-	NM_001099756	91096	-	AY705385 AB384607 TSC_hg19_v1_chr8_-_110656972	92607	-	NM_004215|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC005249|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC022506|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK308950|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AB007619|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AF006265|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY515724|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##NM_198120|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AK290651|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##BC017729|EBAG9|9166|estrogen receptor binding site associated, antigen, 9##AY219181|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##NM_177531|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##BC093096|PKHD1L1|93035|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1##AK297182|SYBU|55638|syntabulin (syntaxin-interacting)##NM_001099756|SYBU|55638|syntabulin (syntaxin-interacting)##AY705385|SYBU|55638|syntabulin (syntaxin-interacting)	0.0	0.0	
chr9	112905526	112905643	reg1016729.p2	3.929	+	NM_001136562 AK300427	-17792	+	TSC_hg19_v1_chr9_+_112810975 AK057098 AK304311	-94621	+	BC146863 BC171800 NM_001004065 NM_001198656 TSC_hg19_v1_chr9_+_112810942	-94675	+	NM_001012993	64828	-	AF065241 AF276919 CR407665 AF313911 AY004872 AF085844 BC003377 J04026 BC054866 TSC_hg19_v1_chr9_-_113018788 X77584	113168	-	TSC_hg19_v1_chr9_-_113018817 BX647247 D28376 AK289508	113241	-	NM_001136562|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK300427|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK057098|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK304311|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC146863|AKAP2|11217|A kinase (PRKA) anchor protein 2##BC171800|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001004065|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001198656|AKAP2|11217|A kinase (PRKA) anchor protein 2##NM_001012993|C9orf152|401546|chromosome 9 open reading frame 152##AF065241|TXN|7295|thioredoxin##AF276919|TXN|7295|thioredoxin##CR407665|TXN|7295|thioredoxin##AF313911|TXN|7295|thioredoxin##AY004872|TXN|7295|thioredoxin##AF085844|TXN|7295|thioredoxin##BC003377|TXN|7295|thioredoxin##J04026|TXN|7295|thioredoxin##BC054866|TXN|7295|thioredoxin##X77584|TXN|7295|thioredoxin##BX647247|TXN|7295|thioredoxin##D28376|TXN|7295|thioredoxin##AK289508|TXN|7295|thioredoxin	0.998075	0.0	denovo_WM_7:-45:0.290	denovo_WM_7:-46:0.290	denovo_WM_7:-47:0.290
chr10	63798564	63798657	reg1013876.p2	3.928	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-137179	+	NM_032199	-137598	+	BC041932 NM_173554	-375892	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	10486	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	229929	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	335433	+	AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC041932|C10orf107|219621|chromosome 10 open reading frame 107##NM_173554|C10orf107|219621|chromosome 10 open reading frame 107##BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365	0.0	0.786892	CTCF.p2:-13:0.787
chr12	108089717	108089819	reg1018150.p1	3.928	+	TSC_hg19_v1_chr12_+_108079586 AK297961 BC010921 AK223162 BC032127 BC001652 L07758 NM_007062 BC046144 BC040135 BC000067 AK290681 DQ892735 DQ895982 DQ896014 CU674810 CU679850 AK296252	-10101	+	AK127295 NM_001017523	-115135	+	TSC_hg19_v1_chr12_+_107712210 BC027931 NM_001018072 BC146824	-377555	+	AK056378 TSC_hg19_v1_chr12_-_108154899	65071	-	TSC_hg19_v1_chr12_-_108154913 NM_012406	65142	-	TSC_hg19_v1_chr12_-_108154938 BC068562	65233	-	AK297961|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC010921|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK223162|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC032127|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC001652|PWP1|11137|PWP1 homolog (S. cerevisiae)##L07758|PWP1|11137|PWP1 homolog (S. cerevisiae)##NM_007062|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC046144|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC040135|PWP1|11137|PWP1 homolog (S. cerevisiae)##BC000067|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK290681|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ892735|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ895982|PWP1|11137|PWP1 homolog (S. cerevisiae)##DQ896014|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK296252|PWP1|11137|PWP1 homolog (S. cerevisiae)##AK127295|BTBD11|121551|BTB (POZ) domain containing 11##NM_001017523|BTBD11|121551|BTB (POZ) domain containing 11##BC027931|BTBD11|121551|BTB (POZ) domain containing 11##NM_001018072|BTBD11|121551|BTB (POZ) domain containing 11##BC146824|BTBD11|121551|BTB (POZ) domain containing 11##AK056378|PRDM4|11108|PR domain containing 4##NM_012406|PRDM4|11108|PR domain containing 4##BC068562|PRDM4|11108|PR domain containing 4	0.994629	0.986083	CTCF.p2:-13:0.986
chr16	30913027	30913186	reg1013048.p2	3.928	+	BC064416 NM_001142544 NM_001330 U43030 TSC_hg19_v1_chr16_+_30907950 BC049822 BC036787	-5164	+	TSC_hg19_v1_chr16_-_30905474 BC058863	-7570	-	TSC_hg19_v1_chr16_-_30905377 BC019071 NM_004765	-7711	-	TSC_hg19_v1_chr16_-_30934469 BC101464 BC101988 BC105687 BC105926 AK092263 AX747439	21407	-	AK302669 NM_001099784	22789	+	TSC_hg19_v1_chr16_+_30937206 BC059173	24103	+	BC064416|CTF1|1489|cardiotrophin 1##NM_001142544|CTF1|1489|cardiotrophin 1##NM_001330|CTF1|1489|cardiotrophin 1##U43030|CTF1|1489|cardiotrophin 1##BC049822|CTF1|1489|cardiotrophin 1##BC036787|CTF1|1489|cardiotrophin 1##BC058863|BCL7C|9274|B-cell CLL/lymphoma 7C##BC019071|BCL7C|9274|B-cell CLL/lymphoma 7C##NM_004765|BCL7C|9274|B-cell CLL/lymphoma 7C##BC101464|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)##BC101988|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)##BC105687|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)##BC105926|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)##AK092263|FBXL19-AS1|283932|FBXL19 antisense RNA 1 (non-protein coding)##AK302669|FBXL19|54620|F-box and leucine-rich repeat protein 19##NM_001099784|FBXL19|54620|F-box and leucine-rich repeat protein 19##BC059173|FBXL19|54620|F-box and leucine-rich repeat protein 19	0.997322	0.0	
chr17	75435064	75435165	reg1013544.p1	3.928	+	AB023208 NM_001113494 AJ312322	-62945	+	TSC_hg19_v1_chr17_+_75369418 AK304143	-65689	+	TSC_hg19_v1_chr17_+_75369236 AJ312319 NM_001113493	-65861	+	NM_001113496 TSC_hg19_v1_chr17_+_75446637	11531	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	11668	+	AK299828 TSC_hg19_v1_chr17_+_75447450	12275	+	AB023208|SEPT9|10801|septin 9##NM_001113494|SEPT9|10801|septin 9##AJ312322|SEPT9|10801|septin 9##AK304143|SEPT9|10801|septin 9##AJ312319|SEPT9|10801|septin 9##NM_001113493|SEPT9|10801|septin 9##NM_001113496|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9	0.356214	0.0	denovo_WM_7:-3:0.326
chr18	69868051	69868231	reg1013899.p1	3.928	+	TSC_hg19_v1_chr18_+_67956280 BC020082	-1911880	+	NM_004232 TSC_hg19_v1_chr18_+_67956194	-1911974	+	TSC_hg19_v1_chr18_-_67872911 BC143723 AK096404 NM_173630	-1995203	-	BC110843 BC035789 TSC_hg19_v1_chr18_-_70210781 AK291364	342634	-	NM_182511 TSC_hg19_v1_chr18_-_70211738	343589	-	AF448839 NM_138999	664792	-	BC020082|SOCS6|9306|suppressor of cytokine signaling 6##NM_004232|SOCS6|9306|suppressor of cytokine signaling 6##BC143723|RTTN|25914|rotatin##AK096404|RTTN|25914|rotatin##NM_173630|RTTN|25914|rotatin##BC110843|CBLN2|147381|cerebellin 2 precursor##BC035789|CBLN2|147381|cerebellin 2 precursor##AK291364|CBLN2|147381|cerebellin 2 precursor##NM_182511|CBLN2|147381|cerebellin 2 precursor##AF448839|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1##NM_138999|NETO1|81832|neuropilin (NRP) and tolloid (TLL)-like 1	0.9975	0.0	
chr19	33300771	33300891	reg1018130.p1	3.928	+	NM_001110822 BC049000	-90152	+	TSC_hg19_v1_chr19_+_33182761 NM_001105570	-118054	+	AK124499 NM_207391	-134519	+	BC029802 AF141289 AB033548 AK026446 AK223147 AK313708 BC017962 NM_001126335 NM_001243036 NM_014270	59830	-	BC029978 TSC_hg19_v1_chr19_-_33462855 AK001375 BC136328 AL832158 BC032307 NM_032816	162012	-	AK309396 NM_152266 AK128668 BC020247 BC010170 BC003535	162339	+	NM_001110822|TDRD12|91646|tudor domain containing 12##BC049000|TDRD12|91646|tudor domain containing 12##NM_001105570|NUDT19|390916|nudix (nucleoside diphosphate linked moiety X)-type motif 19##AK124499|RGS9BP|388531|regulator of G protein signaling 9 binding protein##NM_207391|RGS9BP|388531|regulator of G protein signaling 9 binding protein##BC029802|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AF141289|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AB033548|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AK026446|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AK223147|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##AK313708|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##BC017962|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_001126335|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_001243036|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##NM_014270|SLC7A9|11136|solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9##BC029978|CEP89|84902|centrosomal protein 89kDa##BC136328|CEP89|84902|centrosomal protein 89kDa##AL832158|CEP89|84902|centrosomal protein 89kDa##BC032307|CEP89|84902|centrosomal protein 89kDa##NM_032816|CEP89|84902|centrosomal protein 89kDa##NM_152266|C19orf40|91442|chromosome 19 open reading frame 40##AK128668|C19orf40|91442|chromosome 19 open reading frame 40##BC020247|C19orf40|91442|chromosome 19 open reading frame 40##BC010170|C19orf40|91442|chromosome 19 open reading frame 40##BC003535|C19orf40|91442|chromosome 19 open reading frame 40	0.0	0.0	
chr3	134513860	134513946	reg1015453.p1	3.928	+	BC136349 AK293840 AK294500 AK090526 AK126993 AX746495 NM_178554 TSC_hg19_v1_chr3_-_134369865	-144058	-	AK023448 BC068997 TSC_hg19_v1_chr3_+_134205041 NM_025180 AK056465	-308879	+	TSC_hg19_v1_chr3_+_134204899 NM_001042400	-309019	+	TSC_hg19_v1_chr3_+_134514101 NM_004441 AK291208 AK309741 L40636	248	+	TSC_hg19_v1_chr3_+_134514301 BC111744	398	+	TSC_hg19_v1_chr3_+_135684569 NM_001190447 NM_002718 AK293012 BC015034 BC065531 AK298059 AK314243	1170628	+	BC136349|KY|339855|kyphoscoliosis peptidase##AK293840|KY|339855|kyphoscoliosis peptidase##AK294500|KY|339855|kyphoscoliosis peptidase##AK090526|KY|339855|kyphoscoliosis peptidase##AK126993|KY|339855|kyphoscoliosis peptidase##NM_178554|KY|339855|kyphoscoliosis peptidase##AK023448|CEP63|80254|centrosomal protein 63kDa##BC068997|CEP63|80254|centrosomal protein 63kDa##NM_025180|CEP63|80254|centrosomal protein 63kDa##AK056465|CEP63|80254|centrosomal protein 63kDa##NM_001042400|CEP63|80254|centrosomal protein 63kDa##NM_004441|EPHB1|2047|EPH receptor B1##AK291208|EPHB1|2047|EPH receptor B1##AK309741|EPHB1|2047|EPH receptor B1##L40636|EPHB1|2047|EPH receptor B1##BC111744|EPHB1|2047|EPH receptor B1##NM_001190447|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_002718|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK293012|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC015034|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC065531|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK298059|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK314243|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha	0.0	0.212621	CTCF.p2:-9:0.213
chr3	180629977	180630127	reg1014985.p2	3.928	+	AK304270 NM_181426	-232781	-	AB075860 TSC_hg19_v1_chr3_+_180320970	-309089	+	TSC_hg19_v1_chr3_+_180319985 NM_001042601 NM_133462 AK055984 AL832052 AL833086 BX648669 BC027990 AL833103 AY358762 AK074095 EU832789 GQ129409 CU693360	-310049	+	TSC_hg19_v1_chr3_+_180630246 NM_001013438 NM_001013439 NM_005087	131	+	TSC_hg19_v1_chr3_+_180630462 AK294603 AK297254 AK297331 AK225334 AK292633 U25165 BC028983 AM393057 AM393164 AM393496 AB463046	426	+	NM_001190233 TSC_hg19_v1_chr3_-_180707525 AK311765 BC073989 BC009702 AK309019 AK307097 NM_145261	77381	-	AK304270|CCDC39|339829|coiled-coil domain containing 39##NM_181426|CCDC39|339829|coiled-coil domain containing 39##AB075860|TTC14|151613|tetratricopeptide repeat domain 14##NM_001042601|TTC14|151613|tetratricopeptide repeat domain 14##NM_133462|TTC14|151613|tetratricopeptide repeat domain 14##AK055984|TTC14|151613|tetratricopeptide repeat domain 14##AL832052|TTC14|151613|tetratricopeptide repeat domain 14##AL833086|TTC14|151613|tetratricopeptide repeat domain 14##BX648669|TTC14|151613|tetratricopeptide repeat domain 14##BC027990|TTC14|151613|tetratricopeptide repeat domain 14##AL833103|TTC14|151613|tetratricopeptide repeat domain 14##AY358762|TTC14|151613|tetratricopeptide repeat domain 14##EU832789|TTC14|151613|tetratricopeptide repeat domain 14##GQ129409|TTC14|151613|tetratricopeptide repeat domain 14##NM_001013438|FXR1|8087|fragile X mental retardation, autosomal homolog 1##NM_001013439|FXR1|8087|fragile X mental retardation, autosomal homolog 1##NM_005087|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK294603|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK297254|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK297331|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK225334|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AK292633|FXR1|8087|fragile X mental retardation, autosomal homolog 1##U25165|FXR1|8087|fragile X mental retardation, autosomal homolog 1##BC028983|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AM393057|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AM393164|FXR1|8087|fragile X mental retardation, autosomal homolog 1##AM393496|FXR1|8087|fragile X mental retardation, autosomal homolog 1##NM_001190233|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##AK311765|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##BC073989|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##BC009702|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##AK307097|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19##NM_145261|DNAJC19|131118|DnaJ (Hsp40) homolog, subfamily C, member 19	0.0	0.0	
chr3	30691214	30691331	reg1018707.p1	3.928	+	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-42869	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-43250	+	NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483 BC030290 AY236871 AY236872 AF023259 BC117315 BC143521 TSC_hg19_v1_chr3_+_29323119 AK292789	-1368308	+	AL832766 NM_207359	244880	-	TSC_hg19_v1_chr3_+_31574119 AK311488	882858	+	TSC_hg19_v1_chr3_+_31574468 AK074587	883177	+	D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001003792|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001003793|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177711|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_001177712|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##NM_014483|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236871|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AY236872|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AF023259|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC117315|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##BC143521|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AK292789|RBMS3|27303|RNA binding motif, single stranded interacting protein 3##AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	0.147145	0.0	
chr8	6605949	6606063	reg1013701.p1	3.928	+	TSC_hg19_v1_chr8_+_6566162 AL136587 AB528060 AM392899 AM393058 DQ893436 DQ896747 AK002072 AK310545 BC068519	-39823	+	TSC_hg19_v1_chr8_+_6565916 AF375789 BC023550	-40066	+	TSC_hg19_v1_chr8_+_6565896 NM_018361 BC080537	-40115	+	AY534243 AY358489 AY534242 NM_207411	87086	-	BC033298 BC047677 X92744 U73945 NM_005218	129477	-	M98331 BC093951 BC093953 BC069667 BC069710 BC069728 BC069769 NM_001926	177579	-	AL136587|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM392899|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AM393058|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ893436|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##DQ896747|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK002072|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AK310545|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC068519|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AF375789|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC023550|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##NM_018361|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##BC080537|AGPAT5|55326|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)##AY534243|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##AY358489|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##AY534242|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##NM_207411|XKR5|389610|XK, Kell blood group complex subunit-related family, member 5##BC033298|DEFB1|1672|defensin, beta 1##BC047677|DEFB1|1672|defensin, beta 1##X92744|DEFB1|1672|defensin, beta 1##U73945|DEFB1|1672|defensin, beta 1##NM_005218|DEFB1|1672|defensin, beta 1##M98331|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC093951|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC093953|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069667|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069710|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069728|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##BC069769|DEFA6|1671|defensin, alpha 6, Paneth cell-specific##NM_001926|DEFA6|1671|defensin, alpha 6, Paneth cell-specific	0.227176	0.0	
chr14	102540817	102540900	reg1008294.p1	3.927	+	TSC_hg19_v1_chr14_+_102430909 AB002323 AB527134	-109897	+	TSC_hg19_v1_chr14_+_102430876 AB290157 NM_001376 AK299878	-110030	+	AB451341 CU677587 D26445 AB463199 L42375 TSC_hg19_v1_chr14_+_102276338	-264549	+	TSC_hg19_v1_chr14_-_102553382 AJ890083 X07270 BC017233 BC001695 AK129557 AK291115 AK291607 AK300126 AK310595 BC121062 X15183	12506	-	TSC_hg19_v1_chr14_-_102553513 NM_005348	12648	-	TSC_hg19_v1_chr14_-_102606024 BX248761 AJ890082 AK056446 NM_001017963	65181	-	AB002323|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB290157|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##NM_001376|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AK299878|DYNC1H1|1778|dynein, cytoplasmic 1, heavy chain 1##AB451341|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##D26445|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##L42375|PPP2R5C|5527|protein phosphatase 2, regulatory subunit B', gamma##AJ890083|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X07270|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC017233|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC001695|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK129557|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291115|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK291607|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK300126|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK310595|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BC121062|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##X15183|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_005348|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##BX248761|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AJ890082|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##AK056446|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1##NM_001017963|HSP90AA1|3320|heat shock protein 90kDa alpha (cytosolic), class A member 1	0.0	0.0	
chr1	41049216	41049337	reg1013603.p1	3.927	+	TSC_hg19_v1_chr1_+_40997324 BC091518	-51964	+	AK094072 NM_152373 TSC_hg19_v1_chr1_+_40997288	-52016	+	TSC_hg19_v1_chr1_+_40974438 AK021507 AK024797 AK094092 NM_022774 BC021969 AK023245	-74831	+	TSC_hg19_v1_chr1_-_41131126 BC003103	81858	-	D87074 NM_014747 TSC_hg19_v1_chr1_-_41131355	82067	-	NM_001142587 NM_001142588 NM_001142589 NM_014223 TSC_hg19_v1_chr1_+_41157288	107996	+	BC091518|ZNF684|127396|zinc finger protein 684##AK094072|ZNF684|127396|zinc finger protein 684##NM_152373|ZNF684|127396|zinc finger protein 684##AK021507|DEM1|64789|defects in morphology 1 homolog (S. cerevisiae)##AK024797|DEM1|64789|defects in morphology 1 homolog (S. cerevisiae)##AK094092|DEM1|64789|defects in morphology 1 homolog (S. cerevisiae)##NM_022774|DEM1|64789|defects in morphology 1 homolog (S. cerevisiae)##BC021969|DEM1|64789|defects in morphology 1 homolog (S. cerevisiae)##AK023245|DEM1|64789|defects in morphology 1 homolog (S. cerevisiae)##BC003103|RIMS3|9783|regulating synaptic membrane exocytosis 3##D87074|RIMS3|9783|regulating synaptic membrane exocytosis 3##NM_014747|RIMS3|9783|regulating synaptic membrane exocytosis 3##NM_001142587|NFYC|4802|nuclear transcription factor Y, gamma##NM_001142588|NFYC|4802|nuclear transcription factor Y, gamma##NM_001142589|NFYC|4802|nuclear transcription factor Y, gamma##NM_014223|NFYC|4802|nuclear transcription factor Y, gamma	1.993788	0.0	denovo_WM_7:-79:0.275	denovo_WM_7:-80:0.712	denovo_WM_7:-95:0.847
chr22	37976354	37976425	reg1003444.p2	3.927	+	M87842 BC059782 NM_006498 CR456512	-389	-	TSC_hg19_v1_chr22_+_37956486 NM_152243 BC009356 AK292190 M88338	-19916	+	AB590902 AY032928 NM_014550 BC113659 BC117403 AY028896 TSC_hg19_v1_chr22_-_37915379 BC051720	-61082	-	TSC_hg19_v1_chr22_+_38004480 NM_001001560 NM_001001561 NM_001172687 NM_013365 AK075256	28173	+	TSC_hg19_v1_chr22_+_38004843 CR456493 BC010917 AK290548 BC029388 AK225157 BC044629 AF190862 AF233521 AF218584	28381	+	TSC_hg19_v1_chr22_+_38004869 AB463055 CU013090 CU013378 CU692224	28494	+	M87842|LGALS2|3957|lectin, galactoside-binding, soluble, 2##BC059782|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_006498|LGALS2|3957|lectin, galactoside-binding, soluble, 2##CR456512|LGALS2|3957|lectin, galactoside-binding, soluble, 2##NM_152243|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##BC009356|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AK292190|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##M88338|CDC42EP1|11135|CDC42 effector protein (Rho GTPase binding) 1##AY032928|CARD10|29775|caspase recruitment domain family, member 10##NM_014550|CARD10|29775|caspase recruitment domain family, member 10##BC113659|CARD10|29775|caspase recruitment domain family, member 10##BC117403|CARD10|29775|caspase recruitment domain family, member 10##AY028896|CARD10|29775|caspase recruitment domain family, member 10##NM_001001560|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001001561|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_001172687|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##NM_013365|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK075256|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CR456493|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC010917|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK290548|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC029388|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AK225157|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##BC044629|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF190862|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF233521|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##AF218584|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013090|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1##CU013378|GGA1|26088|golgi-associated, gamma adaptin ear containing, ARF binding protein 1	1.991812	0.0	denovo_WM_7:-33:0.438	denovo_WM_7:-34:0.438
chr2	25448932	25449112	reg1016110.p1	3.927	+	NM_000939 NM_001035256	-57464	-	TSC_hg19_v1_chr2_+_25264954 NM_014971 AB023170	-184045	+	AF178983 AY094594 TSC_hg19_v1_chr2_-_25194828 BC034049 AL137731 NM_001198559 NM_016544	-254155	-	TSC_hg19_v1_chr2_-_25466801 BC018214	17786	-	TSC_hg19_v1_chr2_-_25467080 BC023612	18113	-	TSC_hg19_v1_chr2_-_25468920 AK025230	19956	-	NM_000939|POMC|5443|proopiomelanocortin##NM_001035256|POMC|5443|proopiomelanocortin##NM_014971|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AB023170|EFR3B|22979|EFR3 homolog B (S. cerevisiae)##AF178983|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AY094594|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC034049|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##AL137731|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_001198559|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##NM_016544|DNAJC27|51277|DnaJ (Hsp40) homolog, subfamily C, member 27##BC018214|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC023612|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK025230|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha	0.0	0.0	
chr4	39639166	39639251	reg1015788.p1	3.927	+	TSC_hg19_v1_chr4_+_39529635 AK056558	-109582	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-110033	-	TSC_hg19_v1_chr4_-_39529060 AF061016 AJ007702 BC022781 AK097930 AK297737	-110201	-	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	1348	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	60596	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	340130	-	NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##AF061016|UGDH|7358|UDP-glucose 6-dehydrogenase##AJ007702|UGDH|7358|UDP-glucose 6-dehydrogenase##BC022781|UGDH|7358|UDP-glucose 6-dehydrogenase##AK097930|UGDH|7358|UDP-glucose 6-dehydrogenase##AK297737|UGDH|7358|UDP-glucose 6-dehydrogenase##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.999038	0.0	denovo_WM_7:17:0.849
chr8	101917816	101917888	reg1001526.p2	3.927	+	BC041863 TSC_hg19_v1_chr8_-_101734972	-182886	-	Y00345 TSC_hg19_v1_chr8_-_101734316 AK130523 AK303120 NM_002568	-183535	-	BC015958 BC023217 BC023520 TSC_hg19_v1_chr8_-_101734301	-183557	-	TSC_hg19_v1_chr8_-_101936525 DQ185048	18672	-	TSC_hg19_v1_chr8_-_101962797 NM_001135702	44947	-	TSC_hg19_v1_chr8_-_101963538 NM_001135700 NM_001135701	45610	-	BC041863|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##Y00345|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK130523|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##AK303120|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##NM_002568|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC015958|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC023217|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##BC023520|PABPC1|26986|poly(A) binding protein, cytoplasmic 1##DQ185048|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135702|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135700|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide##NM_001135701|YWHAZ|7534|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	0.980238	0.0	denovo_WM_7:-6:0.778
chr8	37557903	37558015	reg1013413.p1	3.927	+	TSC_hg19_v1_chr8_+_37553300 AK024361 NM_025069 BC032534	-4642	+	TSC_hg19_v1_chr8_-_37457377 AK025743	-100591	-	NM_001031836 AK302391 BC028701	-916089	+	TSC_hg19_v1_chr8_+_37594112 NM_001003791 NM_007175 AL442077	36147	+	TSC_hg19_v1_chr8_+_37594151 BC050611 AK291394 AK297279 AY358108	36185	+	TSC_hg19_v1_chr8_+_37594155 AY358851	36202	+	AK024361|ZNF703|80139|zinc finger protein 703##NM_025069|ZNF703|80139|zinc finger protein 703##BC032534|ZNF703|80139|zinc finger protein 703##AK025743|LOC157860|157860|uncharacterized LOC157860##NM_001031836|KCNU1|157855|potassium channel, subfamily U, member 1##AK302391|KCNU1|157855|potassium channel, subfamily U, member 1##BC028701|KCNU1|157855|potassium channel, subfamily U, member 1##NM_001003791|ERLIN2|11160|ER lipid raft associated 2##NM_007175|ERLIN2|11160|ER lipid raft associated 2##AL442077|ERLIN2|11160|ER lipid raft associated 2##BC050611|ERLIN2|11160|ER lipid raft associated 2##AK291394|ERLIN2|11160|ER lipid raft associated 2##AK297279|ERLIN2|11160|ER lipid raft associated 2##AY358108|ERLIN2|11160|ER lipid raft associated 2##AY358851|ERLIN2|11160|ER lipid raft associated 2	0.0	0.997945	CTCF.p2:26:0.998
chr9	92219845	92220023	reg1000488.p2	3.927	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-106927	-	BC054500 NM_001142287 NM_006378	-125324	-	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	-286516	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	47	+	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	1185185	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	1344102	+	BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase	0.0	0.0	
chr11	128563898	128564015	reg1011506.p1	3.926	+	TSC_hg19_v1_chr11_+_128563793 NM_001167681 NM_002017	-158	+	BX640634 NM_001143820	-106504	-	TSC_hg19_v1_chr11_-_128392200 BC017314 X14798 AK291840 AK301405 NM_001162422 NM_005238	-171822	-	TSC_hg19_v1_chr11_+_128563966 AK313370	5	+	TSC_hg19_v1_chr11_+_128563978 M93255 AK300153 M98833	24	+	TSC_hg19_v1_chr11_+_128563997 X67001 S45205 BC010115 BC001670	99	+	NM_001167681|FLI1|2313|Friend leukemia virus integration 1##NM_002017|FLI1|2313|Friend leukemia virus integration 1##BX640634|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001143820|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##BC017314|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##X14798|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK291840|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK301405|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_001162422|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##NM_005238|ETS1|2113|v-ets erythroblastosis virus E26 oncogene homolog 1 (avian)##AK313370|FLI1|2313|Friend leukemia virus integration 1##M93255|FLI1|2313|Friend leukemia virus integration 1##AK300153|FLI1|2313|Friend leukemia virus integration 1##M98833|FLI1|2313|Friend leukemia virus integration 1##X67001|FLI1|2313|Friend leukemia virus integration 1##S45205|FLI1|2313|Friend leukemia virus integration 1##BC010115|FLI1|2313|Friend leukemia virus integration 1##BC001670|FLI1|2313|Friend leukemia virus integration 1	0.0	0.0	
chr11	66158730	66158865	reg1007977.p1	3.926	+	AF029358 BC093634 BC143335 X86681 TSC_hg19_v1_chr11_-_66139222 AF034102 AF401235 NM_001532	-19620	-	CU692428 DQ892706 DQ895957 AK075354 AK098779 AK225182 TSC_hg19_v1_chr11_-_66115101 AK294604 BC021965 AK293715 AF029893 AK098389 NM_006876	-43706	-	BC009834 TSC_hg19_v1_chr11_-_66112576 AF159141 AK310991 NM_001024957 NM_015399	-46237	-	AK096253 NM_178864 TSC_hg19_v1_chr11_+_66188505 AB049469 BC105001 BC105003 BC143630 EU446888	29764	+	TSC_hg19_v1_chr11_-_66206308 BC108277 AB049638 AK290084 AK223112 BC005002 AF151871 NM_016050 NM_170738 NM_170739	47489	-	AK094060 AX748433 NM_001243135	75000	+	AF029358|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##BC093634|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##BC143335|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##X86681|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AF034102|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##AF401235|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##NM_001532|SLC29A2|3177|solute carrier family 29 (nucleoside transporters), member 2##DQ892706|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##DQ895957|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK075354|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK098779|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK225182|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK294604|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##BC021965|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK293715|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AF029893|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##AK098389|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##NM_006876|B3GNT1|11041|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1##BC009834|BRMS1|25855|breast cancer metastasis suppressor 1##AF159141|BRMS1|25855|breast cancer metastasis suppressor 1##AK310991|BRMS1|25855|breast cancer metastasis suppressor 1##NM_001024957|BRMS1|25855|breast cancer metastasis suppressor 1##NM_015399|BRMS1|25855|breast cancer metastasis suppressor 1##AK096253|NPAS4|266743|neuronal PAS domain protein 4##NM_178864|NPAS4|266743|neuronal PAS domain protein 4##AB049469|NPAS4|266743|neuronal PAS domain protein 4##BC105001|NPAS4|266743|neuronal PAS domain protein 4##BC105003|NPAS4|266743|neuronal PAS domain protein 4##BC143630|NPAS4|266743|neuronal PAS domain protein 4##EU446888|NPAS4|266743|neuronal PAS domain protein 4##BC108277|MRPL11|65003|mitochondrial ribosomal protein L11##AB049638|MRPL11|65003|mitochondrial ribosomal protein L11##AK290084|MRPL11|65003|mitochondrial ribosomal protein L11##AK223112|MRPL11|65003|mitochondrial ribosomal protein L11##BC005002|MRPL11|65003|mitochondrial ribosomal protein L11##AF151871|MRPL11|65003|mitochondrial ribosomal protein L11##NM_016050|MRPL11|65003|mitochondrial ribosomal protein L11##NM_170738|MRPL11|65003|mitochondrial ribosomal protein L11##NM_170739|MRPL11|65003|mitochondrial ribosomal protein L11##AK094060|PELI3|246330|pellino homolog 3 (Drosophila)##NM_001243135|PELI3|246330|pellino homolog 3 (Drosophila)	0.974654	0.0	
chr1	39681067	39681171	reg1005810.p1	3.926	+	AK299010 NM_012090 TSC_hg19_v1_chr1_+_39547088	-134031	+	NM_001184979 NM_004552 TSC_hg19_v1_chr1_+_39492021 AK312188 AF047434 BC093057 AF020352 AF086268 BC001884	-189111	+	TSC_hg19_v1_chr1_+_39456956 NM_001136275 NM_024595 AK022728 AK092624 AX747634 AK124799 AK126262 AK223276 AK298890 AK303098 BC001498 BC119745 BC119746 AY326465	-224057	+	NM_015038	194056	+	TSC_hg19_v1_chr1_+_39922264 AK023821	241200	+	TSC_hg19_v1_chr1_+_39957300 AY303954 NM_181809 BC131617	276226	+	AK299010|MACF1|23499|microtubule-actin crosslinking factor 1##NM_012090|MACF1|23499|microtubule-actin crosslinking factor 1##NM_001184979|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_004552|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AK312188|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF047434|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC093057|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF020352|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##AF086268|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##BC001884|NDUFS5|4725|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)##NM_001136275|AKIRIN1|79647|akirin 1##NM_024595|AKIRIN1|79647|akirin 1##AK022728|AKIRIN1|79647|akirin 1##AK092624|AKIRIN1|79647|akirin 1##AK124799|AKIRIN1|79647|akirin 1##AK126262|AKIRIN1|79647|akirin 1##AK223276|AKIRIN1|79647|akirin 1##AK298890|AKIRIN1|79647|akirin 1##AK303098|AKIRIN1|79647|akirin 1##BC001498|AKIRIN1|79647|akirin 1##BC119745|AKIRIN1|79647|akirin 1##BC119746|AKIRIN1|79647|akirin 1##AY326465|AKIRIN1|79647|akirin 1##NM_015038|KIAA0754|643314|KIAA0754##AK023821|MACF1|23499|microtubule-actin crosslinking factor 1##AY303954|BMP8A|353500|bone morphogenetic protein 8a##NM_181809|BMP8A|353500|bone morphogenetic protein 8a##BC131617|BMP8A|353500|bone morphogenetic protein 8a	0.986817	0.0	denovo_WM_7:3:0.779
chr16	10391680	10391759	reg1010973.p1	3.926	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-115042	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-115531	-	BC143273 U09002 NM_001134408	-115886	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	88198	+	NM_024997 BC137079 BC144468	131021	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	282771	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	0.0	0.0	
chr19	1018967	1019079	reg1009403.p1	3.926	+	TSC_hg19_v1_chr19_+_1000312 AY507106 AY507107 NM_138690	-18658	+	TSC_hg19_v1_chr19_+_984344 NM_024100 BC000040 BC001648 CU674808	-34689	+	TSC_hg19_v1_chr19_+_926038 AY845638 BC060828 NM_005224	-93012	+	DQ893224 DQ896554 CU679197 TSC_hg19_v1_chr19_-_1021121 BC008957 DQ005958	2035	-	TSC_hg19_v1_chr19_-_1021123 AK095756 NM_001033026 NM_033420	2145	-	TSC_hg19_v1_chr19_+_1026273 NM_004368 NM_201277	7276	+	AY507106|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##AY507107|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_138690|GRIN3B|116444|glutamate receptor, ionotropic, N-methyl-D-aspartate 3B##NM_024100|WDR18|57418|WD repeat domain 18##BC000040|WDR18|57418|WD repeat domain 18##BC001648|WDR18|57418|WD repeat domain 18##AY845638|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##BC060828|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##NM_005224|ARID3A|1820|AT rich interactive domain 3A (BRIGHT-like)##DQ893224|C19orf6|91304|chromosome 19 open reading frame 6##DQ896554|C19orf6|91304|chromosome 19 open reading frame 6##BC008957|C19orf6|91304|chromosome 19 open reading frame 6##DQ005958|C19orf6|91304|chromosome 19 open reading frame 6##AK095756|C19orf6|91304|chromosome 19 open reading frame 6##NM_001033026|C19orf6|91304|chromosome 19 open reading frame 6##NM_033420|C19orf6|91304|chromosome 19 open reading frame 6##NM_004368|CNN2|1265|calponin 2##NM_201277|CNN2|1265|calponin 2	0.99503	0.0	
chr3	10021425	10021605	reg1005620.p1	3.926	+	BC089447 AK296317 TSC_hg19_v1_chr3_-_9994093 AY358158 AK090993 AX746722 BC040508 NM_207351	-27437	-	TSC_hg19_v1_chr3_+_9975538 AL050275 NM_015513 NM_001031717 NM_001077415 BC008720 AY358363 AK314113	-45969	+	NM_001203263 NM_001203264 NM_001203265 NM_032732 NM_153460 AK092907 AK290670 AK294616 AK295377 AK315024 AX747801 AY359098 NM_153461 AK075534 AK096824 AK308241 AF458065 BC006411 AK225650 AY358840 AK315053 AK303171 EF676032	-62714	+	CU692722 TSC_hg19_v1_chr3_-_10028505 BC022807	6910	-	BC010883 TSC_hg19_v1_chr3_-_10028526 AK312008 AK172843 AF157321 AK222953 NM_018447	7011	-	TSC_hg19_v1_chr3_+_10028599 AK092352 AX747493	7075	+	BC089447|PRRT3|285368|proline-rich transmembrane protein 3##AY358158|PRRT3|285368|proline-rich transmembrane protein 3##AK090993|PRRT3|285368|proline-rich transmembrane protein 3##BC040508|PRRT3|285368|proline-rich transmembrane protein 3##NM_207351|PRRT3|285368|proline-rich transmembrane protein 3##AL050275|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_015513|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001031717|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001077415|CRELD1|78987|cysteine-rich with EGF-like domains 1##BC008720|CRELD1|78987|cysteine-rich with EGF-like domains 1##AY358363|CRELD1|78987|cysteine-rich with EGF-like domains 1##AK314113|CRELD1|78987|cysteine-rich with EGF-like domains 1##NM_001203263|IL17RC|84818|interleukin 17 receptor C##NM_001203264|IL17RC|84818|interleukin 17 receptor C##NM_001203265|IL17RC|84818|interleukin 17 receptor C##NM_032732|IL17RC|84818|interleukin 17 receptor C##NM_153460|IL17RC|84818|interleukin 17 receptor C##AK092907|IL17RC|84818|interleukin 17 receptor C##AK290670|IL17RC|84818|interleukin 17 receptor C##AK294616|IL17RC|84818|interleukin 17 receptor C##AK295377|IL17RC|84818|interleukin 17 receptor C##AK315024|IL17RC|84818|interleukin 17 receptor C##AY359098|IL17RC|84818|interleukin 17 receptor C##NM_153461|IL17RC|84818|interleukin 17 receptor C##AK075534|IL17RC|84818|interleukin 17 receptor C##AK096824|IL17RC|84818|interleukin 17 receptor C##AK308241|IL17RC|84818|interleukin 17 receptor C##AF458065|IL17RC|84818|interleukin 17 receptor C##BC006411|IL17RC|84818|interleukin 17 receptor C##AK225650|IL17RC|84818|interleukin 17 receptor C##AY358840|IL17RC|84818|interleukin 17 receptor C##AK315053|IL17RC|84818|interleukin 17 receptor C##AK303171|IL17RC|84818|interleukin 17 receptor C##EF676032|IL17RC|84818|interleukin 17 receptor C##BC022807|TMEM111|55831|transmembrane protein 111##BC010883|TMEM111|55831|transmembrane protein 111##AK312008|TMEM111|55831|transmembrane protein 111##AK172843|TMEM111|55831|transmembrane protein 111##AF157321|TMEM111|55831|transmembrane protein 111##AK222953|TMEM111|55831|transmembrane protein 111##NM_018447|TMEM111|55831|transmembrane protein 111##AK092352|LOC442075|442075|uncharacterized LOC442075	0.0	0.0	
chrX	74143796	74143903	reg1013176.p1	3.926	+	NM_016120 NM_183353 TSC_hg19_v1_chrX_-_73834460	-309385	-	TSC_hg19_v1_chrX_-_73834444 AK001334	-309410	-	BC002451 TSC_hg19_v1_chrX_-_73834428	-309421	-	AK307471 NM_001008537 AB095942 BC152557	1450	-	TSC_hg19_v1_chrX_-_74376076 AF078777 AK307414 AF133659 BT009918 CU675349 DQ890692 EU176476 BC006323 AF038950 BX537833 AK294657 AK001418 NM_004299	232254	-	NM_145052 TSC_hg19_v1_chrX_+_74493908 AY643714 AK309951 AK056354 BC015116 CR749336 AK293024	350109	+	NM_016120|RLIM|51132|ring finger protein, LIM domain interacting##NM_183353|RLIM|51132|ring finger protein, LIM domain interacting##AK001334|RLIM|51132|ring finger protein, LIM domain interacting##AK307471|KIAA2022|340533|KIAA2022##NM_001008537|KIAA2022|340533|KIAA2022##AB095942|KIAA2022|340533|KIAA2022##BC152557|KIAA2022|340533|KIAA2022##AF078777|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AK307414|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AF133659|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##BT009918|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##DQ890692|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##EU176476|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##BC006323|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AF038950|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##BX537833|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AK294657|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##AK001418|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##NM_004299|ABCB7|22|ATP-binding cassette, sub-family B (MDR/TAP), member 7##NM_145052|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AY643714|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AK309951|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AK056354|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##BC015116|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##CR749336|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)##AK293024|UPRT|139596|uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)	0.0	0.0	
chr1	246493422	246493561	reg1013746.p1	3.925	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-1175183	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-1359808	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-1359861	+	AK024733 NM_022743	87220	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	177063	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	177117	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.959429	0.0	denovo_WM_7:17:0.285	denovo_WM_7:20:0.674
chr13	41345324	41345417	reg1016221.p2	3.925	+	TSC_hg19_v1_chr13_-_41345327 NM_005830	-38	-	Z68747 BC010159 AK315248 TSC_hg19_v1_chr13_-_41345306 BC022045	-78	-	TSC_hg19_v1_chr13_-_41240783 BC021981 BC070065 AF032885 NM_002015	-104658	-	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	18219	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	18314	+	AF177333 TSC_hg19_v1_chr13_+_41363756	18396	+	NM_005830|MRPS31|10240|mitochondrial ribosomal protein S31##Z68747|MRPS31|10240|mitochondrial ribosomal protein S31##BC010159|MRPS31|10240|mitochondrial ribosomal protein S31##AK315248|MRPS31|10240|mitochondrial ribosomal protein S31##BC022045|MRPS31|10240|mitochondrial ribosomal protein S31##BC021981|FOXO1|2308|forkhead box O1##BC070065|FOXO1|2308|forkhead box O1##AF032885|FOXO1|2308|forkhead box O1##NM_002015|FOXO1|2308|forkhead box O1##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15	0.0	0.0	
chr17	12921467	12921581	reg1015843.p1	3.925	+	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	-168	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	-205	-	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	-248	-	AY358838 TSC_hg19_v1_chr17_-_13505228 AF105376 NM_006042 AK292047	583713	-	TSC_hg19_v1_chr17_-_13972756 AK123100	1051238	-	NM_001303 TSC_hg19_v1_chr17_+_13972839 AK312718	1051255	+	AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AY358838|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AF105376|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_006042|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AK292047|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_001303|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK312718|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	0.0	0.0	
chr1	76760351	76760460	reg1010668.p2	3.925	+	TSC_hg19_v1_chr1_+_76540430 NM_001160011 NM_152996 AK091215 AX746855 BC059363 AK297363 AY358540 AJ507291 CU691350	-219943	+	AF403035 CU691378 BC022517 AF429968 BC036573 AK098606 NM_080868	-362360	-	NM_002440 BC033030 U89293 AF104243 AB528458 CU689598 DQ891259 DQ894445	-497793	+	TSC_hg19_v1_chr1_+_77165439 D28460	405035	+	TSC_hg19_v1_chr1_+_77333125 AK056241	572722	+	TSC_hg19_v1_chr1_+_77333164 AK095758 AK300902 AK295019 BC001201 NM_030965	572766	+	NM_001160011|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##NM_152996|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AK091215|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##BC059363|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AK297363|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AY358540|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AJ507291|ST6GALNAC3|256435|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3##AF403035|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC022517|ASB17|127247|ankyrin repeat and SOCS box containing 17##AF429968|ASB17|127247|ankyrin repeat and SOCS box containing 17##BC036573|ASB17|127247|ankyrin repeat and SOCS box containing 17##AK098606|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_080868|ASB17|127247|ankyrin repeat and SOCS box containing 17##NM_002440|MSH4|4438|mutS homolog 4 (E. coli)##BC033030|MSH4|4438|mutS homolog 4 (E. coli)##U89293|MSH4|4438|mutS homolog 4 (E. coli)##AF104243|MSH4|4438|mutS homolog 4 (E. coli)##DQ891259|MSH4|4438|mutS homolog 4 (E. coli)##DQ894445|MSH4|4438|mutS homolog 4 (E. coli)##D28460|TPI1|7167|triosephosphate isomerase 1##AK056241|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK095758|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK300902|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##AK295019|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##BC001201|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5##NM_030965|ST6GALNAC5|81849|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	0.0	0.0	
chr18	63108303	63108381	reg1011663.p2	3.925	+	NM_001031848 NM_002640 NM_198833 AK300391 L40377 TSC_hg19_v1_chr18_+_61637345 BC034528 U92984 BX571754 AK313782	-1471029	+	NM_001123366	-1491755	+	BC096217 BC096218 BC096219 BC096220 NM_005024 U35459	-1525598	+	AJ007611 NM_033646	309145	+	TSC_hg19_v1_chr18_+_63417845 BC036786	309524	+	AB035301 NM_004361 TSC_hg19_v1_chr18_+_63418247	309860	+	NM_001031848|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_002640|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_198833|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK300391|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##L40377|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BC034528|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##U92984|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##BX571754|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##AK313782|SERPINB8|5271|serpin peptidase inhibitor, clade B (ovalbumin), member 8##NM_001123366|HMSD|284293|histocompatibility (minor) serpin domain containing##BC096217|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096218|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096219|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##BC096220|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##NM_005024|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##U35459|SERPINB10|5273|serpin peptidase inhibitor, clade B (ovalbumin), member 10##AJ007611|CDH7|1005|cadherin 7, type 2##NM_033646|CDH7|1005|cadherin 7, type 2##BC036786|CDH7|1005|cadherin 7, type 2##AB035301|CDH7|1005|cadherin 7, type 2##NM_004361|CDH7|1005|cadherin 7, type 2	0.987166	0.0	denovo_WM_7:-36:0.946
chr3	143643738	143643831	reg1013679.p2	3.925	+	AB089794 AL832304 AY254100 BC035779 AK315107 AK301816 NM_173653	-76517	-	BC067737 TSC_hg19_v1_chr3_+_142895211	-748613	+	TSC_hg19_v1_chr3_+_142838682 NM_004267 BC042160 AK023268 BC068604 BC036930	-805133	+	NM_173552 AK315082	46868	+	TSC_hg19_v1_chr3_+_143690915 BC037293	47206	+	NM_001134470 AK294020	48433	+	AB089794|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AL832304|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AY254100|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##BC035779|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK315107|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##AK301816|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_173653|SLC9A9|285195|solute carrier family 9 (sodium/hydrogen exchanger), member 9##NM_004267|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC042160|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##AK023268|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC068604|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##BC036930|CHST2|9435|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2##NM_173552|C3orf58|205428|chromosome 3 open reading frame 58##AK315082|C3orf58|205428|chromosome 3 open reading frame 58##BC037293|C3orf58|205428|chromosome 3 open reading frame 58##NM_001134470|C3orf58|205428|chromosome 3 open reading frame 58##AK294020|C3orf58|205428|chromosome 3 open reading frame 58	0.957799	0.0	denovo_WM_7:0:0.319	denovo_WM_7:-2:0.204
chr8	52546204	52546347	reg1013694.p1	3.925	+	AJ003030 NM_018967	-1721679	+	NM_001007176 BC017981 AJ276240	-2561366	+	AB464227 CU677105 EU446862 TSC_hg19_v1_chr8_-_49833989 BC015895 BC014890 AK223368 AK312661 NM_003068	-2712365	-	EU170240 AY877349 NM_144651	175678	-	AK304332 BC010693 TSC_hg19_v1_chr8_-_52811575 BC014954 AK056952	265327	-	TSC_hg19_v1_chr8_-_52811724 NM_052937	265452	-	AJ003030|SNTG1|54212|syntrophin, gamma 1##NM_018967|SNTG1|54212|syntrophin, gamma 1##NM_001007176|C8orf22|492307|chromosome 8 open reading frame 22##BC017981|C8orf22|492307|chromosome 8 open reading frame 22##AJ276240|C8orf22|492307|chromosome 8 open reading frame 22##EU446862|SNAI2|6591|snail homolog 2 (Drosophila)##BC015895|SNAI2|6591|snail homolog 2 (Drosophila)##BC014890|SNAI2|6591|snail homolog 2 (Drosophila)##AK223368|SNAI2|6591|snail homolog 2 (Drosophila)##AK312661|SNAI2|6591|snail homolog 2 (Drosophila)##NM_003068|SNAI2|6591|snail homolog 2 (Drosophila)##EU170240|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AY877349|PXDNL|137902|peroxidasin homolog (Drosophila)-like##NM_144651|PXDNL|137902|peroxidasin homolog (Drosophila)-like##AK304332|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##BC010693|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##AK056952|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1##NM_052937|PCMTD1|115294|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	0.017886	0.0	
chr13	75934535	75934711	reg1014371.p1	3.924	+	CR749622 TSC_hg19_v1_chr13_-_75901948	-32701	-	TSC_hg19_v1_chr13_-_74708425 AK291397	-1226227	-	AF161471 AF113122 NM_007249	-1226634	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	121715	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	177355	-	TSC_hg19_v1_chr13_+_76123890 AK313665 BC018125 NM_006002 M30496 CU676190 BT019359 CR456855	189301	+	CR749622|TBC1D4|9882|TBC1 domain family, member 4##AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6##AK313665|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BC018125|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##NM_006002|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##M30496|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##BT019359|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)##CR456855|UCHL3|7347|ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	1.255634	0.0	denovo_WM_7:56:0.330
chr1	46644958	46645062	reg1013793.p1	3.924	+	NM_005727 AK313774	-4257	+	TSC_hg19_v1_chr1_-_46598298 CR749649 BC021622 NM_003629 EU832448 EU832531 BX537388 BC094768 AK313726 NM_001114172	-46532	-	TSC_hg19_v1_chr1_+_46379267 AK027123 AK309510	-265748	+	TSC_hg19_v1_chr1_+_46646203 BC007290 BC000695 BC013404 AF065388 AF133425	1200	+	AB057356 TSC_hg19_v1_chr1_-_46664095 AY358592 AK000284 AK225033	19065	-	TSC_hg19_v1_chr1_-_46664112 BC001471 NM_017739	19115	-	NM_005727|TSPAN1|10103|tetraspanin 1##AK313774|TSPAN1|10103|tetraspanin 1##CR749649|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC021622|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_003629|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832448|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##EU832531|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BX537388|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##BC094768|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AK313726|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##NM_001114172|PIK3R3|8503|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)##AK027123|MAST2|23139|microtubule associated serine/threonine kinase 2##AK309510|MAST2|23139|microtubule associated serine/threonine kinase 2##BC007290|TSPAN1|10103|tetraspanin 1##BC000695|TSPAN1|10103|tetraspanin 1##BC013404|TSPAN1|10103|tetraspanin 1##AF065388|TSPAN1|10103|tetraspanin 1##AF133425|TSPAN1|10103|tetraspanin 1##AB057356|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AY358592|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK000284|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##AK225033|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##BC001471|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase##NM_017739|POMGNT1|55624|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	0.986727	0.0	denovo_WM_7:-13:0.321	denovo_WM_7:-14:0.321	denovo_WM_7:-15:0.321
chr3	149294470	149294599	reg1015628.p2	3.924	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-102045	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-102132	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-198992	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	81201	-	AK022036 NM_001168278	126525	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	175705	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.835364	0.0	denovo_WM_7:11:0.644
chr6	135586420	135586577	reg1013860.p1	3.924	+	TSC_hg19_v1_chr6_+_135517056 X17469	-69409	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	-69592	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-83912	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	232327	-	TSC_hg19_v1_chr6_-_135818879 AK092262 AX747438 BC094800 AJ459824 AJ459825 AJ606362 NM_001134830 NM_001134831 NM_001134832 NM_017651	232387	-	BC127001 BC127000 TSC_hg19_v1_chr6_+_135818964 BC040979	232466	+	X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1##AK092262|AHI1|54806|Abelson helper integration site 1##BC094800|AHI1|54806|Abelson helper integration site 1##AJ459824|AHI1|54806|Abelson helper integration site 1##AJ459825|AHI1|54806|Abelson helper integration site 1##AJ606362|AHI1|54806|Abelson helper integration site 1##NM_001134830|AHI1|54806|Abelson helper integration site 1##NM_001134831|AHI1|54806|Abelson helper integration site 1##NM_001134832|AHI1|54806|Abelson helper integration site 1##NM_017651|AHI1|54806|Abelson helper integration site 1##BC127001|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC127000|LINC00271|100131814|long intergenic non-protein coding RNA 271##BC040979|LINC00271|100131814|long intergenic non-protein coding RNA 271	0.190501	0.0	
chr6	40276484	40276593	reg1009578.p1	3.924	+	TSC_hg19_v1_chr6_-_39902202 AK300300 AF034374 AK091306 AK056740 NM_001075098	-374324	-	AB527188 AJ224328 NM_005943	-381153	-	NM_015345 AL833083 BC128388	-515720	+	BC142616 AB033072 NM_020737 AK291474	278606	-	BC035284 NM_173561 TSC_hg19_v1_chr6_-_41006954	730411	-	NM_001010873 BC104440 BC104441 BC137560 BC137565 BC144710 NM_001159726	733808	+	AK300300|MOCS1|4337|molybdenum cofactor synthesis 1##AF034374|MOCS1|4337|molybdenum cofactor synthesis 1##AK091306|MOCS1|4337|molybdenum cofactor synthesis 1##AK056740|MOCS1|4337|molybdenum cofactor synthesis 1##NM_001075098|MOCS1|4337|molybdenum cofactor synthesis 1##AJ224328|MOCS1|4337|molybdenum cofactor synthesis 1##NM_005943|MOCS1|4337|molybdenum cofactor synthesis 1##NM_015345|DAAM2|23500|dishevelled associated activator of morphogenesis 2##AL833083|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC128388|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC142616|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AB033072|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##NM_020737|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK291474|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##BC035284|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_173561|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_001010873|TSPO2|222642|translocator protein 2##BC104440|TSPO2|222642|translocator protein 2##BC104441|TSPO2|222642|translocator protein 2##BC137560|TSPO2|222642|translocator protein 2##BC137565|TSPO2|222642|translocator protein 2##BC144710|TSPO2|222642|translocator protein 2##NM_001159726|TSPO2|222642|translocator protein 2	0.0	0.418599	
chr9	5529857	5530034	reg1007457.p1	3.924	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-19282	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-79438	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-92065	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	99182	+	BC036853 TSC_hg19_v1_chr9_-_5630098	100145	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	303006	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.0	0.0	
chr12	95416386	95416496	reg1011933.p1	3.923	+	TSC_hg19_v1_chr12_-_95397487 NM_018838	-18925	-	BT007220 CU675197 TSC_hg19_v1_chr12_-_95397471 AF217092 AK222619 BC005936	-18971	-	EU831778 EU831856 BC040535 NM_020698	-372177	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	50857	-	TSC_hg19_v1_chr12_-_95611206 BC125225 BC125226 BX538322 AK124904 NM_018351	194795	-	TSC_hg19_v1_chr12_+_95611582 NM_017599 AK001338 AK225303 AK309943 AK225356 BC014443 AK307864 AL137497 BC064939 BC028597	195253	+	NM_018838|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BT007220|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AF217092|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##AK222619|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##BC005936|NDUFA12|55967|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12##EU831778|TMCC3|57458|transmembrane and coiled-coil domain family 3##EU831856|TMCC3|57458|transmembrane and coiled-coil domain family 3##BC040535|TMCC3|57458|transmembrane and coiled-coil domain family 3##NM_020698|TMCC3|57458|transmembrane and coiled-coil domain family 3##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC125225|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BC125226|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BX538322|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##AK124904|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##NM_018351|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##NM_017599|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK001338|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225303|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK309943|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225356|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC014443|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK307864|VEZT|55591|vezatin, adherens junctions transmembrane protein##AL137497|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC064939|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC028597|VEZT|55591|vezatin, adherens junctions transmembrane protein	0.998572	0.0	denovo_WM_7:43:0.494	denovo_WM_7:44:0.494
chr16	68738267	68738447	reg1010526.p1	3.923	+	X63629 TSC_hg19_v1_chr16_+_68679239 AB527800 EU832319 EU832404	-59103	+	TSC_hg19_v1_chr16_+_68679201 AK296968 AK312554 AK225396	-59152	+	NM_001793	-60207	+	AK312551 TSC_hg19_v1_chr16_+_68771194 AK297913 EU709494 NM_004360 BC141838 BC146662 L08599	32844	+	BC144283 TSC_hg19_v1_chr16_+_68771216 AK290012 Z13009	32862	+	TSC_hg19_v1_chr16_+_68771242 BC015576 AB025105 AB025106	32888	+	X63629|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832319|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##EU832404|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK296968|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312554|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK225396|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##NM_001793|CDH3|1001|cadherin 3, type 1, P-cadherin (placental)##AK312551|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK297913|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##EU709494|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##NM_004360|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC141838|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC146662|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##L08599|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##BC144283|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AK290012|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##Z13009|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025105|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)##AB025106|CDH1|999|cadherin 1, type 1, E-cadherin (epithelial)	0.0	0.997283	CTCF.p2:66:0.997
chr17	18753485	18753622	reg1016742.p1	3.923	+	TSC_hg19_v1_chr17_+_18684595 BC008430 NM_016078 AK290813 BX537929 BX648167	-68951	+	NM_031456 BC028364 AK310383 AL136822	-106197	+	AK301647 DQ232882 NM_001037330 AK316368 AK301639 AK298836 BC146902 BC146907	-128137	+	NM_001243936 NM_001243942 TSC_hg19_v1_chr17_+_18759671 BX648850 AK303911	6088	+	NM_001243941 NM_002767 TSC_hg19_v1_chr17_+_18761443 AK313087	7859	+	TSC_hg19_v1_chr17_+_18761445 BC106050 AK304544	7917	+	BC008430|FAM18B1|51030|family with sequence similarity 18, member B1##NM_016078|FAM18B1|51030|family with sequence similarity 18, member B1##AK290813|FAM18B1|51030|family with sequence similarity 18, member B1##BX537929|FAM18B1|51030|family with sequence similarity 18, member B1##BX648167|FAM18B1|51030|family with sequence similarity 18, member B1##NM_031456|FBXW10|10517|F-box and WD repeat domain containing 10##BC028364|FBXW10|10517|F-box and WD repeat domain containing 10##AK310383|FBXW10|10517|F-box and WD repeat domain containing 10##AL136822|FBXW10|10517|F-box and WD repeat domain containing 10##AK301647|TRIM16L|147166|tripartite motif containing 16-like##DQ232882|TRIM16L|147166|tripartite motif containing 16-like##NM_001037330|TRIM16L|147166|tripartite motif containing 16-like##AK316368|TRIM16L|147166|tripartite motif containing 16-like##AK301639|TRIM16L|147166|tripartite motif containing 16-like##AK298836|TRIM16L|147166|tripartite motif containing 16-like##BC146902|TRIM16L|147166|tripartite motif containing 16-like##BC146907|TRIM16L|147166|tripartite motif containing 16-like##NM_001243936|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243942|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BX648850|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK303911|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_001243941|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##NM_002767|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK313087|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##BC106050|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2##AK304544|PRPSAP2|5636|phosphoribosyl pyrophosphate synthetase-associated protein 2	0.222391	0.0	denovo_WM_7:-93:0.222
chr17	68295041	68295120	reg1008036.p1	3.923	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-129384	+	BC033038 NM_170742	-194086	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-223650	+	TSC_hg19_v1_chr17_-_70116937 AL833139	1821858	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	1822079	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	1822090	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.974032	0.0	denovo_WM_7:-58:0.462	denovo_WM_7:-59:0.496
chr17	7787437	7787534	reg1006580.p2	3.923	+	TSC_hg19_v1_chr17_+_7761320 BC060779 AK289520	-26140	+	BC033861 NM_032356 BC051846 TSC_hg19_v1_chr17_-_7761246	-26277	-	AK057061 NM_144607	-26422	+	TSC_hg19_v1_chr17_+_7788113 NM_001005271	626	+	TSC_hg19_v1_chr17_+_7792039 AF006515 NM_001005273 NM_005852 U91543	4616	+	TSC_hg19_v1_chr17_+_7812703 AK096555	25275	+	BC060779|CYB5D1|124637|cytochrome b5 domain containing 1##AK289520|CYB5D1|124637|cytochrome b5 domain containing 1##BC033861|LSMD1|84316|LSM domain containing 1##NM_032356|LSMD1|84316|LSM domain containing 1##BC051846|LSMD1|84316|LSM domain containing 1##AK057061|CYB5D1|124637|cytochrome b5 domain containing 1##NM_144607|CYB5D1|124637|cytochrome b5 domain containing 1##NM_001005271|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_001005273|CHD3|1107|chromodomain helicase DNA binding protein 3##NM_005852|CHD3|1107|chromodomain helicase DNA binding protein 3##U91543|CHD3|1107|chromodomain helicase DNA binding protein 3##AK096555|CHD3|1107|chromodomain helicase DNA binding protein 3	0.0	0.0	
chr4	129747480	129747579	reg1003358.p1	3.923	+	TSC_hg19_v1_chr4_+_129732427 BC032376	-15076	+	TSC_hg19_v1_chr4_+_129730875 NM_024900 NM_199320 AK027620 AF520952 AK304815 AK127326	-16659	+	AK131272 NM_006320	-537546	-	BC014677 BC040258 BC121058 BC121057 BC128051 TSC_hg19_v1_chr4_-_130014737 BC064428 AK055217 NM_144643	267061	-	NM_173487 AK091022 AX746735 AK309229 BX538164 BC032582	267338	+	NM_001099783	269752	+	BC032376|PHF17|79960|PHD finger protein 17##NM_024900|PHF17|79960|PHD finger protein 17##NM_199320|PHF17|79960|PHD finger protein 17##AK027620|PHF17|79960|PHD finger protein 17##AF520952|PHF17|79960|PHD finger protein 17##AK304815|PHF17|79960|PHD finger protein 17##AK127326|PHF17|79960|PHD finger protein 17##AK131272|PGRMC2|10424|progesterone receptor membrane component 2##NM_006320|PGRMC2|10424|progesterone receptor membrane component 2##BC014677|SCLT1|132320|sodium channel and clathrin linker 1##BC040258|SCLT1|132320|sodium channel and clathrin linker 1##BC121058|SCLT1|132320|sodium channel and clathrin linker 1##BC121057|SCLT1|132320|sodium channel and clathrin linker 1##BC128051|SCLT1|132320|sodium channel and clathrin linker 1##BC064428|SCLT1|132320|sodium channel and clathrin linker 1##AK055217|SCLT1|132320|sodium channel and clathrin linker 1##NM_144643|SCLT1|132320|sodium channel and clathrin linker 1##NM_173487|C4orf33|132321|chromosome 4 open reading frame 33##AK091022|C4orf33|132321|chromosome 4 open reading frame 33##AK309229|C4orf33|132321|chromosome 4 open reading frame 33##BX538164|C4orf33|132321|chromosome 4 open reading frame 33##BC032582|C4orf33|132321|chromosome 4 open reading frame 33##NM_001099783|C4orf33|132321|chromosome 4 open reading frame 33	0.0	0.0	
chr5	124084703	124084834	reg1014218.p2	3.923	+	BC131507 AB033107 BC151226 NM_020747	-3980	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1236886	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1325624	-	NM_001146319 AK316288 AK300154	1611046	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1674075	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1674419	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr1	28913396	28913465	reg1005859.p1	3.922	+	BC064589 BC068048 AK092096 BC045792 TSC_hg19_v1_chr1_-_28908385	-5060	-	TSC_hg19_v1_chr1_+_28879528 NM_017846 AK000510 AK309481 AK023555 AK300162 BC000680 BC039879 BC035855 AB528915	-33860	+	TSC_hg19_v1_chr1_+_28844766 BC069198	-68648	+	BC033175 NM_152304 AK312176	5312	+	NM_001193532 AK026009	5586	+	BC011986 TSC_hg19_v1_chr1_-_28969617 U57693 X84002 AK310097 NM_001135218 NM_005644	56150	-	BC064589|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC068048|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##AK092096|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##BC045792|SNHG12|85028|small nucleolar RNA host gene 12 (non-protein coding)##NM_017846|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK000510|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK309481|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK023555|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##AK300162|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC000680|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC039879|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC035855|TRNAU1AP|54952|tRNA selenocysteine 1 associated protein 1##BC069198|RCC1|1104|regulator of chromosome condensation 1##BC033175|RAB42|115273|RAB42, member RAS oncogene family##NM_152304|RAB42|115273|RAB42, member RAS oncogene family##AK312176|RAB42|115273|RAB42, member RAS oncogene family##NM_001193532|RAB42|115273|RAB42, member RAS oncogene family##BC011986|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##U57693|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##X84002|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##AK310097|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_001135218|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa##NM_005644|TAF12|6883|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa	0.993792	0.0	denovo_WM_7:-64:0.248	denovo_WM_7:-65:0.248	denovo_WM_7:-66:0.248	denovo_WM_7:-67:0.248
chr1	47901916	47901994	reg1000978.p3	3.922	+	AF042832 NM_004474	-267	+	AF275722 NM_012186	-20212	+	TSC_hg19_v1_chr1_+_47799646 AF259961	-102314	+	NM_001194986	560606	-	BC104857 BC104863 BC143570 BC143587 NM_001011547 NM_001135181 BC143572 TSC_hg19_v1_chr1_+_48688387 BC048332 AK131200 BX648549 AK296133	786437	+	TSC_hg19_v1_chr1_-_48937679 CU676616 DQ892001 DQ895191 BC020660	1035723	-	AF042832|FOXD2|2306|forkhead box D2##NM_004474|FOXD2|2306|forkhead box D2##AF275722|FOXE3|2301|forkhead box E3##NM_012186|FOXE3|2301|forkhead box E3##AF259961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##NM_001194986|LOC388630|388630|UPF0632 protein A##BC104857|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC104863|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143570|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143587|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001011547|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001135181|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143572|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC048332|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK131200|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BX648549|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK296133|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##DQ892001|SPATA6|54558|spermatogenesis associated 6##DQ895191|SPATA6|54558|spermatogenesis associated 6##BC020660|SPATA6|54558|spermatogenesis associated 6	0.0	0.0	
chr20	3098657	3098819	reg1010581.p1	3.922	+	AF031476 M25647 X03172 BC126196 BC126224 BC018062 NM_000490	-33386	-	X03173 TSC_hg19_v1_chr20_+_3052956	-45841	+	BC069144 NM_000915 BC101841 BC101843 M25650 AB463993 M62611	-46419	+	BC000515 TSC_hg19_v1_chr20_-_3140500 AK222876 AK301748 BC064544 BC011856	41750	-	TSC_hg19_v1_chr20_-_3140509 AK022444 AK023211 BC046122	41776	-	AB020667 TSC_hg19_v1_chr20_-_3140529 AK222570 BC007413 NM_021826 NM_014948 NM_199415	41798	-	AF031476|AVP|551|arginine vasopressin##M25647|AVP|551|arginine vasopressin##X03172|AVP|551|arginine vasopressin##BC126196|AVP|551|arginine vasopressin##BC126224|AVP|551|arginine vasopressin##BC018062|AVP|551|arginine vasopressin##NM_000490|AVP|551|arginine vasopressin##X03173|OXT|5020|oxytocin, prepropeptide##BC069144|OXT|5020|oxytocin, prepropeptide##NM_000915|OXT|5020|oxytocin, prepropeptide##BC101841|OXT|5020|oxytocin, prepropeptide##BC101843|OXT|5020|oxytocin, prepropeptide##M25650|OXT|5020|oxytocin, prepropeptide##M62611|OXT|5020|oxytocin, prepropeptide##BC000515|UBOX5|22888|U-box domain containing 5##AK222876|UBOX5|22888|U-box domain containing 5##AK301748|FASTKD5|60493|FAST kinase domains 5##BC064544|UBOX5|22888|U-box domain containing 5##BC011856|FASTKD5|60493|FAST kinase domains 5##AK022444|UBOX5|22888|U-box domain containing 5##AK023211|FASTKD5|60493|FAST kinase domains 5##BC046122|UBOX5|22888|U-box domain containing 5##AB020667|UBOX5|22888|U-box domain containing 5##AK222570|UBOX5|22888|U-box domain containing 5##BC007413|FASTKD5|60493|FAST kinase domains 5##NM_021826|FASTKD5|60493|FAST kinase domains 5##NM_014948|UBOX5|22888|U-box domain containing 5##NM_199415|UBOX5|22888|U-box domain containing 5	1.773827	0.0	denovo_WM_7:75:0.449	denovo_WM_7:78:0.288	denovo_WM_7:-80:0.653
chr2	96877333	96877430	reg1015519.p1	3.922	+	TSC_hg19_v1_chr2_-_96874588 NM_020151	-2783	-	AF270647 TSC_hg19_v1_chr2_-_96874561 BC012774 BC014076 BC012793 BC007894 BC009998 BC032106 BC014274 BC003028 BC008894 BC013279	-2847	-	TSC_hg19_v1_chr2_+_96874144 AK311432	-3227	+	BC101730 BC101732 NM_001037228	28595	+	TSC_hg19_v1_chr2_-_96931700 BC039892	54306	-	TSC_hg19_v1_chr2_-_96931736 AX775835 BC028575 AK000514 AK293276	54348	-	NM_020151|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##AF270647|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012774|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014076|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC012793|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC007894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC009998|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC032106|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC014274|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC003028|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC008894|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC013279|STARD7|56910|StAR-related lipid transfer (START) domain containing 7##BC101730|LOC285033|285033|uncharacterized LOC285033##BC101732|LOC285033|285033|uncharacterized LOC285033##NM_001037228|LOC285033|285033|uncharacterized LOC285033##BC039892|TMEM127|55654|transmembrane protein 127##BC028575|TMEM127|55654|transmembrane protein 127##AK000514|TMEM127|55654|transmembrane protein 127##AK293276|TMEM127|55654|transmembrane protein 127	0.989719	0.0	denovo_WM_7:-15:0.811
chr5	141397780	141397861	reg1008306.p1	3.922	+	D31766 TSC_hg19_v1_chr5_-_141392593 AK290686 AK022779 AK296452 BC020769 BC022322 NM_005471	-5242	-	TSC_hg19_v1_chr5_+_141348760 BX647955	-49066	+	TSC_hg19_v1_chr5_+_141348705 AK023698 AK023884 AK294262 NM_183401	-49117	+	AK075495 TSC_hg19_v1_chr5_+_141488283	90431	+	TSC_hg19_v1_chr5_+_141488343 NM_030571 AK315481 AY192728	90528	+	AK075524 TSC_hg19_v1_chr5_+_141488384	90564	+	D31766|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK290686|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK022779|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##AK296452|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC020769|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BC022322|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##NM_005471|GNPDA1|10007|glucosamine-6-phosphate deaminase 1##BX647955|RNF14|9604|ring finger protein 14##AK023698|RNF14|9604|ring finger protein 14##AK023884|RNF14|9604|ring finger protein 14##AK294262|RNF14|9604|ring finger protein 14##NM_183401|RNF14|9604|ring finger protein 14##AK075495|NDFIP1|80762|Nedd4 family interacting protein 1##NM_030571|NDFIP1|80762|Nedd4 family interacting protein 1##AK315481|NDFIP1|80762|Nedd4 family interacting protein 1##AY192728|NDFIP1|80762|Nedd4 family interacting protein 1##AK075524|NDFIP1|80762|Nedd4 family interacting protein 1	0.0	0.0	
chr6	15694742	15694903	reg1019058.p2	3.922	+	TSC_hg19_v1_chr6_-_15663260 NM_032122 NM_183040	-31532	-	EU831643 EU831727 EU832348 EU832433 TSC_hg19_v1_chr6_-_15663205 AK310590 AF394226 AL136637 BC011912 AK290718 AK054593 AY265460	-31645	-	TSC_hg19_v1_chr6_+_15249113 AK303610	-445709	+	TSC_hg19_v1_chr6_+_16129316 AK074391 AK314648 NM_013262	434480	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	434615	+	TSC_hg19_v1_chr6_+_16143281 AK026739	448488	+	NM_032122|DTNBP1|84062|dystrobrevin binding protein 1##NM_183040|DTNBP1|84062|dystrobrevin binding protein 1##EU831643|DTNBP1|84062|dystrobrevin binding protein 1##EU831727|DTNBP1|84062|dystrobrevin binding protein 1##EU832348|DTNBP1|84062|dystrobrevin binding protein 1##EU832433|DTNBP1|84062|dystrobrevin binding protein 1##AK310590|DTNBP1|84062|dystrobrevin binding protein 1##AF394226|DTNBP1|84062|dystrobrevin binding protein 1##AL136637|DTNBP1|84062|dystrobrevin binding protein 1##BC011912|DTNBP1|84062|dystrobrevin binding protein 1##AK290718|DTNBP1|84062|dystrobrevin binding protein 1##AK054593|DTNBP1|84062|dystrobrevin binding protein 1##AY265460|DTNBP1|84062|dystrobrevin binding protein 1##AK303610|JARID2|3720|jumonji, AT rich interactive domain 2##AK074391|MYLIP|29116|myosin regulatory light chain interacting protein##AK314648|MYLIP|29116|myosin regulatory light chain interacting protein##NM_013262|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein	1.993788	0.0	denovo_WM_7:-23:0.275	denovo_WM_7:-24:0.712	denovo_WM_7:-39:0.847
chr11	20300514	20300630	reg1013059.p1	3.921	+	NM_001029865	-118703	-	AK290458 TSC_hg19_v1_chr11_+_20070637	-229949	+	TSC_hg19_v1_chr11_+_20049136 AK307574	-251440	+	NM_006410 TSC_hg19_v1_chr11_+_20385245 NM_001098521	84670	+	TSC_hg19_v1_chr11_+_20385268 AK292092 NM_001098520	84709	+	TSC_hg19_v1_chr11_+_20385346 BC002439 NM_001098522	84791	+	NM_001029865|DBX1|120237|developing brain homeobox 1##AK290458|NAV2|89797|neuron navigator 2##AK307574|NAV2|89797|neuron navigator 2##NM_006410|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098521|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##AK292092|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098520|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##BC002439|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa##NM_001098522|HTATIP2|10553|HIV-1 Tat interactive protein 2, 30kDa	0.024415	0.0	
chr12	10396585	10396765	reg1008968.p2	3.921	+	AF287012 TSC_hg19_v1_chr12_+_10365506 AF087847 AK303581 AK315418 AK074195 BC028315 NM_031412 BC009309 AL136676 BX648781 BC008891	-31199	+	NM_153022 AY358845 AK055728	-65082	+	AB102861 AB590414 CU692540 DQ891409 DQ894585 AF035776 AK292124 AK295409 AK298040 BC022295 BC055085 AB010710 AK308009 NM_001172632 NM_001172633 NM_002543	-71943	-	AK291506 AY227806 NM_001114396	60371	+	NM_002262 NM_007334 AF498040 AF498041 AY327501 U30610 BC028009 AB009597 AJ000001	63857	+	BC039836 AK226161 AK292059 NM_007360	145959	-	AF287012|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AF087847|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK303581|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK315418|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AK074195|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC028315|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_031412|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC009309|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##AL136676|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BX648781|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##BC008891|GABARAPL1|23710|GABA(A) receptor-associated protein like 1##NM_153022|C12orf59|120939|chromosome 12 open reading frame 59##AY358845|C12orf59|120939|chromosome 12 open reading frame 59##AK055728|C12orf59|120939|chromosome 12 open reading frame 59##AB102861|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##DQ891409|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##DQ894585|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AF035776|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK292124|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK295409|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK298040|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##BC022295|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##BC055085|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AB010710|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK308009|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_001172632|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_001172633|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##NM_002543|OLR1|4973|oxidized low density lipoprotein (lectin-like) receptor 1##AK291506|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY227806|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_001114396|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_002262|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##NM_007334|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498040|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AF498041|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AY327501|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##U30610|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC028009|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AB009597|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##AJ000001|KLRD1|3824|killer cell lectin-like receptor subfamily D, member 1##BC039836|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK226161|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##AK292059|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1##NM_007360|KLRK1|22914|killer cell lectin-like receptor subfamily K, member 1	0.0	0.0	
chr16	89092856	89092951	reg1011992.p2	3.921	+	AB527670 EU446890 BC047019 AK314766 AB010419 BC062624 NM_005187 TSC_hg19_v1_chr16_-_89043569	-49500	-	AB010420 NM_175931	-85297	-	AB528852 EU190484 BC130001 BC130002 NM_001080487	-159862	-	TSC_hg19_v1_chr16_-_89119364 AK055272	26466	-	NM_001127214 NM_001243279 NM_174917 TSC_hg19_v1_chr16_+_89160259	67334	+	TSC_hg19_v1_chr16_+_89160285 BC028399 AK290963 BC064609 BC072391 AK075499	67404	+	EU446890|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##BC047019|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AK314766|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AB010419|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##BC062624|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_005187|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AB010420|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_175931|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##EU190484|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##BC130001|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##BC130002|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##NM_001080487|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##NM_001127214|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001243279|ACSF3|197322|acyl-CoA synthetase family member 3##NM_174917|ACSF3|197322|acyl-CoA synthetase family member 3##BC028399|ACSF3|197322|acyl-CoA synthetase family member 3##AK290963|ACSF3|197322|acyl-CoA synthetase family member 3##BC064609|ACSF3|197322|acyl-CoA synthetase family member 3##BC072391|ACSF3|197322|acyl-CoA synthetase family member 3##AK075499|ACSF3|197322|acyl-CoA synthetase family member 3	0.0	0.0	
chr22	29198518	29198653	reg1016770.p1	3.921	+	TSC_hg19_v1_chr22_+_29196668 AF086143	-1902	+	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	-2018	-	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	-2094	-	TSC_hg19_v1_chr22_+_29279579 NM_001206998 AB051436 CR456397	81192	+	AK096397 NM_032173	114791	+	TSC_hg19_v1_chr22_+_29449893 BC042614	251340	+	BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##NM_001206998|ZNRF3|84133|zinc and ring finger 3##AB051436|ZNRF3|84133|zinc and ring finger 3##CR456397|ZNRF3|84133|zinc and ring finger 3##AK096397|ZNRF3|84133|zinc and ring finger 3##NM_032173|ZNRF3|84133|zinc and ring finger 3##BC042614|ZNRF3|84133|zinc and ring finger 3	0.996393	0.0	denovo_WM_7:78:0.950
chr9	119629833	119629939	reg1014550.p1	3.921	+	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	-180280	+	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	-180424	-	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	-713816	+	TSC_hg19_v1_chr9_-_120177318 AB014534 BC146756 NM_014010	547427	-	TSC_hg19_v1_chr9_-_120177336 BX649176	547448	-	TSC_hg19_v1_chr9_+_120466459 NM_138554 AK290053	836578	+	NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##AB014534|ASTN2|23245|astrotactin 2##BC146756|ASTN2|23245|astrotactin 2##NM_014010|ASTN2|23245|astrotactin 2##BX649176|ASTN2|23245|astrotactin 2##NM_138554|TLR4|7099|toll-like receptor 4##AK290053|TLR4|7099|toll-like receptor 4	0.998236	0.0	
chr14	64335240	64335401	reg1011548.p2	3.920	+	TSC_hg19_v1_chr14_+_64319731 NM_015180 NM_182914 AF435011 BC042134 BC071873 AF495911 AK095241	-15625	+	AJ293294 TSC_hg19_v1_chr14_-_64194774 AF349315 BC063839 NM_030791 AK314188 BC070060	-140571	-	TSC_hg19_v1_chr14_-_64108544 AF115513 AK095324 NM_080666	-226758	-	NM_182913 AY061758 AK297874	345557	+	NM_182910	347351	+	AF074599 AY438022 X99101 DQ777076 DQ777077 DQ838582 DQ838583 HQ692820 HQ692821 AF124790 NM_001214902 NM_001214903 AB006590	414343	-	NM_015180|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182914|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF435011|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC042134|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##BC071873|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF495911|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK095241|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AJ293294|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF349315|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC063839|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##NM_030791|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AK314188|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##BC070060|SGPP1|81537|sphingosine-1-phosphate phosphatase 1##AF115513|WDR89|112840|WD repeat domain 89##AK095324|WDR89|112840|WD repeat domain 89##NM_080666|WDR89|112840|WD repeat domain 89##NM_182913|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AY061758|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AK297874|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##NM_182910|SYNE2|23224|spectrin repeat containing, nuclear envelope 2##AF074599|ESR2|2100|estrogen receptor 2 (ER beta)##AY438022|ESR2|2100|estrogen receptor 2 (ER beta)##X99101|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777076|ESR2|2100|estrogen receptor 2 (ER beta)##DQ777077|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838582|ESR2|2100|estrogen receptor 2 (ER beta)##DQ838583|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692820|ESR2|2100|estrogen receptor 2 (ER beta)##HQ692821|ESR2|2100|estrogen receptor 2 (ER beta)##AF124790|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214902|ESR2|2100|estrogen receptor 2 (ER beta)##NM_001214903|ESR2|2100|estrogen receptor 2 (ER beta)##AB006590|ESR2|2100|estrogen receptor 2 (ER beta)	0.0	0.0	
chr18	60721243	60721309	reg1013801.p2	3.920	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-336968	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-337350	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	-338612	+	TSC_hg19_v1_chr18_-_60795898 AF401211	74659	-	BC027258 NM_000633 NM_000657	265284	-	TSC_hg19_v1_chr18_-_60986977 X06487	265717	-	BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2	0.0	0.0	
chr19	36716353	36716490	reg1018597.p1	3.920	+	TSC_hg19_v1_chr19_+_36706007 BC065568 BC005154 BC016795	-10362	+	AK094310 NM_001042474	-10438	-	NM_001099638 NM_001099639 NM_007145 TSC_hg19_v1_chr19_+_36705624	-10847	+	AK313460 TSC_hg19_v1_chr19_+_36726957	10499	+	TSC_hg19_v1_chr19_+_36727378 AB464376 AK311486	10931	+	TSC_hg19_v1_chr19_-_36822604 BC041949	106207	-	BC065568|ZNF146|7705|zinc finger protein 146##BC005154|ZNF146|7705|zinc finger protein 146##AK094310|ZNF565|147929|zinc finger protein 565##NM_001042474|ZNF565|147929|zinc finger protein 565##NM_001099638|ZNF146|7705|zinc finger protein 146##NM_001099639|ZNF146|7705|zinc finger protein 146##NM_007145|ZNF146|7705|zinc finger protein 146##AK313460|ZNF146|7705|zinc finger protein 146##AK311486|ZNF146|7705|zinc finger protein 146##BC041949|LOC100506930|100506930|uncharacterized LOC100506930	0.944411	0.0	denovo_WM_7:-9:0.870	denovo_WM_7:107:0.261
chr19	49843993	49844173	reg1008586.p2	3.920	+	X14046 TSC_hg19_v1_chr19_+_49838746 BC106752 AK316348 BT019851 CR541877	-5318	+	TSC_hg19_v1_chr19_+_49838702 AL833693 BC110379	-5371	+	TSC_hg19_v1_chr19_+_49838683 NM_001040031 NM_001774 AK301328	-5405	+	AL832240 BC051301 TSC_hg19_v1_chr19_-_49865672 AK300241 AK290736 BC007556 NM_003598	21592	-	NM_001197302 AY358922 NM_001197301 NM_014419 BC030581 AF177398	23013	+	NM_144688 TSC_hg19_v1_chr19_+_49891539 AK057220 AK097696 BC029811	47433	+	X14046|CD37|951|CD37 molecule##BC106752|CD37|951|CD37 molecule##BT019851|CD37|951|CD37 molecule##CR541877|CD37|951|CD37 molecule##AL833693|CD37|951|CD37 molecule##BC110379|CD37|951|CD37 molecule##NM_001040031|CD37|951|CD37 molecule##NM_001774|CD37|951|CD37 molecule##AK301328|CD37|951|CD37 molecule##AL832240|TEAD2|8463|TEA domain family member 2##BC051301|TEAD2|8463|TEA domain family member 2##AK300241|TEAD2|8463|TEA domain family member 2##AK290736|TEAD2|8463|TEA domain family member 2##BC007556|TEAD2|8463|TEA domain family member 2##NM_003598|TEAD2|8463|TEA domain family member 2##NM_001197302|DKKL1|27120|dickkopf-like 1##AY358922|DKKL1|27120|dickkopf-like 1##NM_001197301|DKKL1|27120|dickkopf-like 1##NM_014419|DKKL1|27120|dickkopf-like 1##BC030581|DKKL1|27120|dickkopf-like 1##AF177398|DKKL1|27120|dickkopf-like 1##NM_144688|CCDC155|147872|coiled-coil domain containing 155##AK057220|CCDC155|147872|coiled-coil domain containing 155##AK097696|CCDC155|147872|coiled-coil domain containing 155##BC029811|CCDC155|147872|coiled-coil domain containing 155	0.995968	0.0	denovo_WM_7:-38:0.879
chr19	57791706	57791839	reg1017826.p1	3.920	+	TSC_hg19_v1_chr19_+_57791351 AK298106	-416	+	TSC_hg19_v1_chr19_+_57752051 NM_001023563 NM_001145078	-39715	+	AK297977 TSC_hg19_v1_chr19_+_57751999	-39784	+	TSC_hg19_v1_chr19_+_57791852 AK292144 NM_006635 AK074582 AY329492	115	+	TSC_hg19_v1_chr19_+_57831849 NM_213598 AK131547	40142	+	TSC_hg19_v1_chr19_+_57862669 NM_020657 AJ276316 BC111531 BC111532	70891	+	AK298106|ZNF460|10794|zinc finger protein 460##NM_001023563|ZNF805|390980|zinc finger protein 805##NM_001145078|ZNF805|390980|zinc finger protein 805##AK297977|ZNF805|390980|zinc finger protein 805##AK292144|ZNF460|10794|zinc finger protein 460##NM_006635|ZNF460|10794|zinc finger protein 460##AK074582|ZNF460|10794|zinc finger protein 460##AY329492|ZNF460|10794|zinc finger protein 460##NM_213598|ZNF543|125919|zinc finger protein 543##AK131547|ZNF543|125919|zinc finger protein 543##NM_020657|ZNF304|57343|zinc finger protein 304##AJ276316|ZNF304|57343|zinc finger protein 304##BC111531|ZNF304|57343|zinc finger protein 304##BC111532|ZNF304|57343|zinc finger protein 304	0.0	0.0	
chr4	116437195	116437302	reg1004994.p2	3.920	+	BC113075 BC012326 AK289670 AB036429 NM_022569	-402267	-	NM_003360 U30930	-893726	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-917665	+	AK074617 BC030831 NM_152402	1569485	-	TSC_hg19_v1_chr4_+_118954764 AY358852	2517523	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	2518327	+	BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	0.128102	0.0	
chr5	137558462	137558642	reg1008748.p1	3.920	+	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	-9521	-	AF191341 BT009810 AB590268 DQ891686 DQ894870 TSC_hg19_v1_chr5_-_137549013 BC017713 AF053977 BC005258 BC010944 AK291610 AB011472 AK223250	-9549	-	TSC_hg19_v1_chr5_+_137514857 AK296879 AK025790 AF153329 BC012999	-43737	+	AF051767 DQ890850 DQ894004 BC037951 AY358997 AK314022 AK297693 NM_001496 AY359037 TSC_hg19_v1_chr5_-_137610343	51676	-	M34065 BC019089 TSC_hg19_v1_chr5_-_137667469 NM_001790 NM_022809	108941	-	NM_001135647 TSC_hg19_v1_chr5_+_137673265 BC052993	114702	+	AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF191341|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BT009810|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ891686|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ894870|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC017713|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF053977|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC005258|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC010944|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK291610|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AB011472|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK223250|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK296879|KIF20A|10112|kinesin family member 20A##AK025790|KIF20A|10112|kinesin family member 20A##AF153329|KIF20A|10112|kinesin family member 20A##BC012999|KIF20A|10112|kinesin family member 20A##AF051767|GFRA3|2676|GDNF family receptor alpha 3##DQ890850|GFRA3|2676|GDNF family receptor alpha 3##DQ894004|GFRA3|2676|GDNF family receptor alpha 3##BC037951|GFRA3|2676|GDNF family receptor alpha 3##AY358997|GFRA3|2676|GDNF family receptor alpha 3##AK314022|GFRA3|2676|GDNF family receptor alpha 3##AK297693|GFRA3|2676|GDNF family receptor alpha 3##NM_001496|GFRA3|2676|GDNF family receptor alpha 3##AY359037|GFRA3|2676|GDNF family receptor alpha 3##M34065|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##BC019089|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001790|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_022809|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001135647|FAM53C|51307|family with sequence similarity 53, member C##BC052993|FAM53C|51307|family with sequence similarity 53, member C	0.0	0.093989	
chr5	159852582	159852719	reg1013953.p1	3.920	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-3747	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-3796	+	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	-6545	-	AK025130 TSC_hg19_v1_chr5_-_160112393	259689	-	AB018258 AK295081 AK090832 AX746642 NM_025153	426481	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	1122476	-	BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK025130|ATP10B|23120|ATPase, class V, type 10B##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2	0.891638	0.0	denovo_WM_7:-10:0.818
chr7	140771222	140771357	reg1019598.p1	3.920	+	NM_053035 TSC_hg19_v1_chr7_-_140714792	-56503	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	-56539	-	AF151897 AK024776 NM_016071	-56822	-	NM_001195278	2742	+	NM_018238 TSC_hg19_v1_chr7_+_141251215 AK304502 AK001704 AK299131 AK222769 AJ278150 BC009775	479868	+	TSC_hg19_v1_chr7_-_141401967 AB032973 NM_001080392 AB384573	630645	-	NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33##AF151897|MRPS33|51650|mitochondrial ribosomal protein S33##AK024776|MRPS33|51650|mitochondrial ribosomal protein S33##NM_016071|MRPS33|51650|mitochondrial ribosomal protein S33##NM_001195278|LOC100507421|100507421|transmembrane protein 178-like##NM_018238|AGK|55750|acylglycerol kinase##AK304502|AGK|55750|acylglycerol kinase##AK001704|AGK|55750|acylglycerol kinase##AK299131|AGK|55750|acylglycerol kinase##AK222769|AGK|55750|acylglycerol kinase##AJ278150|AGK|55750|acylglycerol kinase##BC009775|AGK|55750|acylglycerol kinase##AB032973|KIAA1147|57189|KIAA1147##NM_001080392|KIAA1147|57189|KIAA1147	0.979612	0.981419	denovo_WM_7:24:0.852	CTCF.p2:-59:0.981
chr10	107597935	107598028	reg1016123.p1	3.919	+	BC117417 TSC_hg19_v1_chr10_+_106401047	-1196936	+	AB028982 NM_014978	-1197123	+	TSC_hg19_v1_chr10_+_106113521 BC036225 NM_001008723 BX641120 AK093227 AX748000 BC109126	-1484440	+	TSC_hg19_v1_chr10_-_108459000 AK123752	861078	-	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	1326395	-	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	4085228	-	BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##AB028982|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##NM_014978|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC036225|CCDC147|159686|coiled-coil domain containing 147##NM_001008723|CCDC147|159686|coiled-coil domain containing 147##BX641120|CCDC147|159686|coiled-coil domain containing 147##AK093227|CCDC147|159686|coiled-coil domain containing 147##BC109126|CCDC147|159686|coiled-coil domain containing 147##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	0.0	0.0	
chr14	76581678	76581794	reg1011936.p2	3.919	+	TSC_hg19_v1_chr14_+_76452112 NM_001102564 NM_052873 AK302944 AK056735 BC032566 BC010436 BC042852 CU679711	-129644	+	NM_003239	-133645	-	AK313564 TSC_hg19_v1_chr14_-_76447479 X14149 J03241	-134265	-	TSC_hg19_v1_chr14_+_76618258 NM_017926 NM_017972 BC058032	36520	+	TSC_hg19_v1_chr14_+_76618279 AB032978	36541	+	AK000696 TSC_hg19_v1_chr14_+_76618289	36570	+	NM_001102564|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##NM_052873|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##AK302944|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##AK056735|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##BC010436|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##BC042852|IFT43|112752|intraflagellar transport 43 homolog (Chlamydomonas)##NM_003239|TGFB3|7043|transforming growth factor, beta 3##AK313564|TGFB3|7043|transforming growth factor, beta 3##X14149|TGFB3|7043|transforming growth factor, beta 3##J03241|TGFB3|7043|transforming growth factor, beta 3##NM_017926|C14orf118|55668|chromosome 14 open reading frame 118##NM_017972|C14orf118|55668|chromosome 14 open reading frame 118##BC058032|C14orf118|55668|chromosome 14 open reading frame 118##AB032978|C14orf118|55668|chromosome 14 open reading frame 118##AK000696|C14orf118|55668|chromosome 14 open reading frame 118	0.996465	0.018154	denovo_WM_7:22:0.691
chr3	158072639	158072741	reg1014781.p2	3.919	+	TSC_hg19_v1_chr3_+_157827937 AK300388	-244750	+	TSC_hg19_v1_chr3_+_157827910 AK290334 BC006982 NM_016625 AF208853 BC010357	-244799	+	HQ258019 AJ002367 TSC_hg19_v1_chr3_-_157823847 BC008829 NM_001163678 NM_003030 NM_006884	-248807	-	NM_001130156 NM_001130157 NM_001195432 NM_001195433 NM_001195434 NM_022443 AK056948 AK315402 BC095437 BX647666 AY848700 AY848701 AY848702 BC007045 L49054 AK297488 AK096889	216307	+	TSC_hg19_v1_chr3_+_158362361 AF309777 AF367998 AK000780 NM_024996 BC049210	289639	+	TSC_hg19_v1_chr3_+_158362373 AK315031	289691	+	AK300388|RSRC1|51319|arginine/serine-rich coiled-coil 1##AK290334|RSRC1|51319|arginine/serine-rich coiled-coil 1##BC006982|RSRC1|51319|arginine/serine-rich coiled-coil 1##NM_016625|RSRC1|51319|arginine/serine-rich coiled-coil 1##AF208853|RSRC1|51319|arginine/serine-rich coiled-coil 1##BC010357|RSRC1|51319|arginine/serine-rich coiled-coil 1##HQ258019|SHOX2|6474|short stature homeobox 2##AJ002367|SHOX2|6474|short stature homeobox 2##BC008829|SHOX2|6474|short stature homeobox 2##NM_001163678|SHOX2|6474|short stature homeobox 2##NM_003030|SHOX2|6474|short stature homeobox 2##NM_006884|SHOX2|6474|short stature homeobox 2##NM_001130156|MLF1|4291|myeloid leukemia factor 1##NM_001130157|MLF1|4291|myeloid leukemia factor 1##NM_001195432|MLF1|4291|myeloid leukemia factor 1##NM_001195433|MLF1|4291|myeloid leukemia factor 1##NM_001195434|MLF1|4291|myeloid leukemia factor 1##NM_022443|MLF1|4291|myeloid leukemia factor 1##AK056948|MLF1|4291|myeloid leukemia factor 1##AK315402|MLF1|4291|myeloid leukemia factor 1##BC095437|MLF1|4291|myeloid leukemia factor 1##BX647666|MLF1|4291|myeloid leukemia factor 1##AY848700|MLF1|4291|myeloid leukemia factor 1##AY848701|MLF1|4291|myeloid leukemia factor 1##AY848702|MLF1|4291|myeloid leukemia factor 1##BC007045|MLF1|4291|myeloid leukemia factor 1##L49054|MLF1|4291|myeloid leukemia factor 1##AK297488|MLF1|4291|myeloid leukemia factor 1##AK096889|MLF1|4291|myeloid leukemia factor 1##AF309777|GFM1|85476|G elongation factor, mitochondrial 1##AF367998|GFM1|85476|G elongation factor, mitochondrial 1##AK000780|GFM1|85476|G elongation factor, mitochondrial 1##NM_024996|GFM1|85476|G elongation factor, mitochondrial 1##BC049210|GFM1|85476|G elongation factor, mitochondrial 1##AK315031|GFM1|85476|G elongation factor, mitochondrial 1	1.777699	0.0	denovo_WM_7:-57:0.587	denovo_WM_7:93:0.615
chr4	39183504	39183684	reg1011708.p1	3.919	+	AK289785 NM_015990 NM_199039	-119743	+	TSC_hg19_v1_chr4_+_39046535 NM_001007075 NM_001171654 BC053860 AB208820	-137156	+	BC030803 BC060512 AK026888 NM_024943	-149584	-	AY029257 NM_025132 TSC_hg19_v1_chr4_+_39184150 AK308803 AK026780 AK225588 AK294730 AK304161 BC032578	501	+	AF040250 BC035297 TSC_hg19_v1_chr4_-_39367983 BC051751 AK291612 BC010387 AJ564999 NM_001204747 NM_002913	184358	-	AB079373 NM_175737 TSC_hg19_v1_chr4_+_39408496	224890	+	AK289785|KLHL5|51088|kelch-like 5 (Drosophila)##NM_015990|KLHL5|51088|kelch-like 5 (Drosophila)##NM_199039|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001007075|KLHL5|51088|kelch-like 5 (Drosophila)##NM_001171654|KLHL5|51088|kelch-like 5 (Drosophila)##BC053860|KLHL5|51088|kelch-like 5 (Drosophila)##AB208820|KLHL5|51088|kelch-like 5 (Drosophila)##BC030803|TMEM156|80008|transmembrane protein 156##BC060512|TMEM156|80008|transmembrane protein 156##AK026888|TMEM156|80008|transmembrane protein 156##NM_024943|TMEM156|80008|transmembrane protein 156##AY029257|WDR19|57728|WD repeat domain 19##NM_025132|WDR19|57728|WD repeat domain 19##AK308803|WDR19|57728|WD repeat domain 19##AK026780|WDR19|57728|WD repeat domain 19##AK225588|WDR19|57728|WD repeat domain 19##AK294730|WDR19|57728|WD repeat domain 19##AK304161|WDR19|57728|WD repeat domain 19##BC032578|WDR19|57728|WD repeat domain 19##AF040250|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC035297|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC051751|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AK291612|RFC1|5981|replication factor C (activator 1) 1, 145kDa##BC010387|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AJ564999|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_001204747|RFC1|5981|replication factor C (activator 1) 1, 145kDa##NM_002913|RFC1|5981|replication factor C (activator 1) 1, 145kDa##AB079373|KLB|152831|klotho beta##NM_175737|KLB|152831|klotho beta	1.21664	0.0	denovo_WM_7:-29:0.796
chr4	56857083	56857188	reg1015155.p1	3.919	+	AK023683 NM_025009 TSC_hg19_v1_chr4_+_56815093 BC136535 BC136536	-42044	+	TSC_hg19_v1_chr4_+_56719840 BC094751 NM_001024924 NM_018261 NM_178237 AK001755 AK027413	-137270	+	DQ891295 DQ894479 BC012908 NM_006681 X76029 TSC_hg19_v1_chr4_-_56502465	-354723	-	AK126014 NM_020722	179225	+	AF516672 AY422212 BC142709 TSC_hg19_v1_chr4_-_57253644 AF161436 AK303733 BC141824 AK294332 AY314787 BC015096 NM_181806 AK316296 AK304309 BX648853	396492	-	AB590152 CU678610 DQ893484 DQ896410 TSC_hg19_v1_chr4_-_57301775 AK290942 BC004200 U00238 AK222759 D13757 AK312297 NM_002703	444621	-	AK023683|CEP135|9662|centrosomal protein 135kDa##NM_025009|CEP135|9662|centrosomal protein 135kDa##BC136535|CEP135|9662|centrosomal protein 135kDa##BC136536|CEP135|9662|centrosomal protein 135kDa##BC094751|EXOC1|55763|exocyst complex component 1##NM_001024924|EXOC1|55763|exocyst complex component 1##NM_018261|EXOC1|55763|exocyst complex component 1##NM_178237|EXOC1|55763|exocyst complex component 1##AK001755|EXOC1|55763|exocyst complex component 1##AK027413|EXOC1|55763|exocyst complex component 1##DQ891295|NMU|10874|neuromedin U##DQ894479|NMU|10874|neuromedin U##BC012908|NMU|10874|neuromedin U##NM_006681|NMU|10874|neuromedin U##X76029|NMU|10874|neuromedin U##AK126014|KIAA1211|57482|KIAA1211##NM_020722|KIAA1211|57482|KIAA1211##AF516672|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY422212|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC142709|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AF161436|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK303733|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC141824|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK294332|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY314787|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC015096|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##NM_181806|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK316296|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK304309|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BX648853|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##DQ893484|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##DQ896410|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK290942|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##BC004200|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##U00238|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK222759|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##D13757|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK312297|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_002703|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase	0.990739	0.0	denovo_WM_7:16:0.491	denovo_WM_7:17:0.286	denovo_WM_7:18:0.214
chr6	90065666	90065744	reg1012257.p1	3.919	+	TSC_hg19_v1_chr6_-_90062622 NM_016021	-2918	-	TSC_hg19_v1_chr6_-_90062559 AK290574 BC013973	-3190	-	TSC_hg19_v1_chr6_-_90062439 AK223464 AK300629	-3265	-	BC003088 AF272036 AL137502 TSC_hg19_v1_chr6_-_90121800	56035	-	TSC_hg19_v1_chr6_-_90121945 AK289799	56223	-	TSC_hg19_v1_chr6_-_90121986 NM_021244	56419	-	NM_016021|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK290574|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##BC013973|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK223464|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##AK300629|UBE2J1|51465|ubiquitin-conjugating enzyme E2, J1, U##BC003088|RRAGD|58528|Ras-related GTP binding D##AF272036|RRAGD|58528|Ras-related GTP binding D##AL137502|RRAGD|58528|Ras-related GTP binding D##AK289799|RRAGD|58528|Ras-related GTP binding D##NM_021244|RRAGD|58528|Ras-related GTP binding D	0.0	0.0	
chr9	100263280	100263407	reg1008634.p1	3.919	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	-88964	+	TSC_hg19_v1_chr9_+_100174364 NM_014290 BC028694	-89070	+	NM_020893 CR749320	-193405	+	NM_001166116 AK314533	119	+	TSC_hg19_v1_chr9_+_100263947 BC002660 NM_003275	595	+	TSC_hg19_v1_chr9_-_100395642 AK094043 AK291199 AX748426 BC035604 BX648493 BX538308 AK128615	132286	-	AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7##NM_014290|TDRD7|23424|tudor domain containing 7##BC028694|TDRD7|23424|tudor domain containing 7##NM_020893|C9orf174|100499483|chromosome 9 open reading frame 174##CR749320|C9orf174|100499483|chromosome 9 open reading frame 174##NM_001166116|TMOD1|7111|tropomodulin 1##AK314533|TMOD1|7111|tropomodulin 1##BC002660|TMOD1|7111|tropomodulin 1##NM_003275|TMOD1|7111|tropomodulin 1##AK094043|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK291199|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BC035604|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX648493|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##BX538308|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2##AK128615|TSTD2|158427|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	0.990849	0.0	
chr9	5494355	5494535	reg1003295.p2	3.919	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-43938	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-56565	-	X00949 DQ893302 DQ896468 BC005956 NM_006911	-154637	-	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	16218	+	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	134682	+	BC036853 TSC_hg19_v1_chr9_-_5630098	135645	-	NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##X00949|RLN1|6013|relaxin 1##DQ893302|RLN1|6013|relaxin 1##DQ896468|RLN1|6013|relaxin 1##BC005956|RLN1|6013|relaxin 1##NM_006911|RLN1|6013|relaxin 1##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46	0.0	0.0	
chrX	153237346	153237475	reg1012231.p1	3.919	+	TSC_hg19_v1_chrX_-_153236650 L20010 BC063435 NM_005334	-691	-	BC010606 TSC_hg19_v1_chrX_-_153218266	-19198	-	D10232 AB527578 BC015558 TSC_hg19_v1_chrX_-_153210096 AK298125 NM_002910	-27266	-	NM_003492	580	+	AF346607 DQ054788 AM392624 AM393211 EU831427 EU831520 AB463802 TSC_hg19_v1_chrX_-_153285300 BC014963	47885	-	TSC_hg19_v1_chrX_-_153285340 BC054000 L76191 NM_001025242 NM_001025243 NM_001569	47927	-	L20010|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##BC063435|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##NM_005334|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##BC010606|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##D10232|RENBP|5973|renin binding protein##BC015558|RENBP|5973|renin binding protein##AK298125|RENBP|5973|renin binding protein##NM_002910|RENBP|5973|renin binding protein##NM_003492|TMEM187|8269|transmembrane protein 187##AF346607|IRAK1|3654|interleukin-1 receptor-associated kinase 1##DQ054788|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM392624|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM393211|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831427|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831520|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC014963|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC054000|IRAK1|3654|interleukin-1 receptor-associated kinase 1##L76191|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025242|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025243|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001569|IRAK1|3654|interleukin-1 receptor-associated kinase 1	0.0	0.0	
chr10	112169650	112169751	reg1012515.p1	3.918	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-105000	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-105107	-	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-183879	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	88051	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	157792	+	AF067163 TSC_hg19_v1_chr10_+_112344155	174415	+	BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3	1.976184	0.0	denovo_WM_7:-8:0.840	denovo_WM_7:-32:0.308	denovo_WM_7:-33:0.308	denovo_WM_7:-34:0.309
chr10	76510494	76510644	reg1009427.p1	3.918	+	TSC_hg19_v1_chr10_+_75936554 DQ890624 EU176483	-573982	+	TSC_hg19_v1_chr10_+_75936527 BC003568 U90339	-574039	+	U50196 TSC_hg19_v1_chr10_+_75936520 AK290633 AK302706	-574087	+	TSC_hg19_v1_chr10_+_76586357 AK074816 BC014143 BC048199 NM_012330 AF217500 BC150618	75785	+	AY686755 NM_001003892 BC137321 BC137322	307736	-	AB027004 AB103375 NM_016364	348678	-	DQ890624|ADK|132|adenosine kinase##EU176483|ADK|132|adenosine kinase##BC003568|ADK|132|adenosine kinase##U90339|ADK|132|adenosine kinase##U50196|ADK|132|adenosine kinase##AK290633|ADK|132|adenosine kinase##AK302706|ADK|132|adenosine kinase##AK074816|KAT6B|23522|K(lysine) acetyltransferase 6B##BC014143|KAT6B|23522|K(lysine) acetyltransferase 6B##BC048199|KAT6B|23522|K(lysine) acetyltransferase 6B##NM_012330|KAT6B|23522|K(lysine) acetyltransferase 6B##AF217500|KAT6B|23522|K(lysine) acetyltransferase 6B##BC150618|KAT6B|23522|K(lysine) acetyltransferase 6B##AY686755|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##NM_001003892|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137321|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##BC137322|DUPD1|338599|dual specificity phosphatase and pro isomerase domain containing 1##AB027004|DUSP13|51207|dual specificity phosphatase 13##AB103375|DUSP13|51207|dual specificity phosphatase 13##NM_016364|DUSP13|51207|dual specificity phosphatase 13	0.999624	0.0	denovo_WM_7:-58:0.741
chr1	113163812	113163992	reg1014057.p1	3.918	+	TSC_hg19_v1_chr1_+_113162456 BT019364 CR407657 CR541819 DQ890754 DQ893919 U56637	-1437	+	BC000144 TSC_hg19_v1_chr1_+_113162453 AK223226	-1451	+	TSC_hg19_v1_chr1_+_113162439 AK289654	-1469	+	TSC_hg19_v1_chr1_+_113217108 AL833353 NM_001130079 NM_020963 AK310512 AK226011	53213	+	TSC_hg19_v1_chr1_+_113217295 AK023297 AB046851 BX647787 BC009312 BC025339 AK074174	53430	+	BC002548 TSC_hg19_v1_chr1_+_113217490	53576	+	BT019364|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR407657|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##CR541819|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ890754|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##DQ893919|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##U56637|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##BC000144|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK223226|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AK289654|CAPZA1|829|capping protein (actin filament) muscle Z-line, alpha 1##AL833353|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_001130079|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##NM_020963|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK310512|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK226011|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK023297|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AB046851|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BX647787|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC009312|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC025339|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##AK074174|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)##BC002548|MOV10|4343|Mov10, Moloney leukemia virus 10, homolog (mouse)	0.997179	0.0	denovo_WM_7:16:0.976
chr1	173451922	173452015	reg1015720.p1	3.918	+	TSC_hg19_v1_chr1_+_173446484 BC035857 NM_004905 AK289352 BC025421 D14662 BC053550 CU690218 AJ844621	-5441	+	TSC_hg19_v1_chr1_+_173446473 AK300680	-5495	+	TSC_hg19_v1_chr1_-_173446300 AK127238	-5660	-	BC042592 AK302731 AK128104 NM_178527	120237	-	NM_001195190	152692	+	BC094694 TSC_hg19_v1_chr1_-_173638991 AK127170 BC126353 BC126355 NM_198493	187018	-	BC035857|PRDX6|9588|peroxiredoxin 6##NM_004905|PRDX6|9588|peroxiredoxin 6##AK289352|PRDX6|9588|peroxiredoxin 6##BC025421|PRDX6|9588|peroxiredoxin 6##D14662|PRDX6|9588|peroxiredoxin 6##BC053550|PRDX6|9588|peroxiredoxin 6##AJ844621|PRDX6|9588|peroxiredoxin 6##AK300680|PRDX6|9588|peroxiredoxin 6##AK127238|LOC100506023|100506023|uncharacterized LOC100506023##BC042592|SLC9A11|284525|solute carrier family 9, member 11##AK302731|SLC9A11|284525|solute carrier family 9, member 11##AK128104|SLC9A11|284525|solute carrier family 9, member 11##NM_178527|SLC9A11|284525|solute carrier family 9, member 11##NM_001195190|LOC730159|730159|uncharacterized LOC730159##AK127170|ANKRD45|339416|ankyrin repeat domain 45##BC126353|ANKRD45|339416|ankyrin repeat domain 45##BC126355|ANKRD45|339416|ankyrin repeat domain 45##NM_198493|ANKRD45|339416|ankyrin repeat domain 45	0.0	0.0	
chr13	52529871	52530004	reg1008935.p1	3.918	+	AK098719 NM_031290 AK225745 AL136887 BC069691 BC069748 BC069770 BC069806	-93743	+	BC026024 BC009825 NM_001031719 TSC_hg19_v1_chr13_-_52378300 AK023701 NM_024705	-151662	-	TSC_hg19_v1_chr13_+_52158648 AF411978 CU680736	-371202	+	DQ015922 U03464 BC143974 BC143973 BC117200 BC143975 BC143976 NM_000053 NM_001005918 NM_001243182 U11700	55613	-	TSC_hg19_v1_chr13_+_52586546 NM_001004127 BC142998 AK296747 AK092428 AX747540 BC108677 BC111022 AK025456 BC143059 BC150316	56598	+	BC073862 D87455 NM_021645	68815	+	AK098719|CCDC70|83446|coiled-coil domain containing 70##NM_031290|CCDC70|83446|coiled-coil domain containing 70##AK225745|CCDC70|83446|coiled-coil domain containing 70##AL136887|CCDC70|83446|coiled-coil domain containing 70##BC069691|CCDC70|83446|coiled-coil domain containing 70##BC069748|CCDC70|83446|coiled-coil domain containing 70##BC069770|CCDC70|83446|coiled-coil domain containing 70##BC069806|CCDC70|83446|coiled-coil domain containing 70##BC026024|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##BC009825|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001031719|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK023701|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_024705|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AF411978|WDFY2|115825|WD repeat and FYVE domain containing 2##DQ015922|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U03464|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143974|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143973|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC117200|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143975|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143976|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_000053|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001005918|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001243182|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U11700|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001004127|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC142998|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK296747|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC108677|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC111022|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##AK025456|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC143059|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC150316|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##BC073862|ALG11|440138|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)##D87455|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)##NM_021645|UTP14C|9724|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)	0.96376	0.0	denovo_WM_7:-9:0.816
chr14	68704345	68704493	reg1013365.p1	3.918	+	AK309787 NM_002877 NM_133509 NM_133510 U92074 U84138 TSC_hg19_v1_chr14_+_68286537 Y15571 AK310686 BC030219 BX161515 BX248766 BX248061	-417899	+	AB425197 BC144594 TSC_hg19_v1_chr14_-_68283303 BX537886 AK304428 BX648036 BX648683 CR749276 CR749365 AK308233 NM_015346	-421120	-	AK315462 NM_152443	-535817	+	AB385016 BT019468 X99404 DQ891349 DQ894529 BC018340 AK294363 TSC_hg19_v1_chr14_-_69259782 AK303917	555301	-	NM_001244698 NM_004926	556211	-	NM_001244701 AB528867	558565	-	AK309787|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_002877|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133509|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##NM_133510|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U92074|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##U84138|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##Y15571|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AK310686|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BC030219|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX161515|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248766|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##BX248061|RAD51B|5890|RAD51 homolog B (S. cerevisiae)##AB425197|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BC144594|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX537886|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK304428|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648036|ZFYVE26|23503|zinc finger, FYVE domain containing 26##BX648683|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749276|ZFYVE26|23503|zinc finger, FYVE domain containing 26##CR749365|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK308233|ZFYVE26|23503|zinc finger, FYVE domain containing 26##NM_015346|ZFYVE26|23503|zinc finger, FYVE domain containing 26##AK315462|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##NM_152443|RDH12|145226|retinol dehydrogenase 12 (all-trans/9-cis/11-cis)##BT019468|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##X99404|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ891349|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##DQ894529|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##BC018340|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK294363|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##AK303917|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244698|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_004926|ZFP36L1|677|zinc finger protein 36, C3H type-like 1##NM_001244701|ZFP36L1|677|zinc finger protein 36, C3H type-like 1	1.014128	0.0	
chr16	67194813	67194976	reg1012064.p2	3.918	+	TSC_hg19_v1_chr16_+_67193861 AK002140 BC014414 NM_018378	-1027	+	TSC_hg19_v1_chr16_-_67193813 NM_003789	-1076	-	TSC_hg19_v1_chr16_-_67193791 L41690 BC004491 AK301593	-1112	-	NM_001040667 NM_001538	2393	+	AK293631 TSC_hg19_v1_chr16_+_67198611	3703	+	TSC_hg19_v1_chr16_+_67198637 BC130383	3748	+	AK002140|FBXL8|55336|F-box and leucine-rich repeat protein 8##BC014414|FBXL8|55336|F-box and leucine-rich repeat protein 8##NM_018378|FBXL8|55336|F-box and leucine-rich repeat protein 8##NM_003789|TRADD|8717|TNFRSF1A-associated via death domain##L41690|TRADD|8717|TNFRSF1A-associated via death domain##BC004491|TRADD|8717|TNFRSF1A-associated via death domain##AK301593|TRADD|8717|TNFRSF1A-associated via death domain##NM_001040667|HSF4|3299|heat shock transcription factor 4##NM_001538|HSF4|3299|heat shock transcription factor 4##AK293631|HSF4|3299|heat shock transcription factor 4##BC130383|HSF4|3299|heat shock transcription factor 4	0.0	0.0	
chr16	88714886	88715026	reg1014404.p2	3.918	+	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	-9953	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-78087	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	-78128	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	2493	-	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	14561	-	TSC_hg19_v1_chr16_+_88729753 BX640980	14795	+	AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase##BX640980|MGC23284|197187|uncharacterized LOC197187	0.999149	0.0	denovo_WM_7:80:0.697
chr20	45903481	45903597	reg1012649.p1	3.918	+	TSC_hg19_v1_chr20_+_45523523 AK293032 AF455147	-379987	+	TSC_hg19_v1_chr20_+_45523505 BC008803	-380031	+	TSC_hg19_v1_chr20_+_45523254 BC013882 NM_005244 NM_172110	-380257	+	TSC_hg19_v1_chr20_-_45927496 BC030721	24030	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	73108	-	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	81949	-	AK293032|EYA2|2139|eyes absent homolog 2 (Drosophila)##AF455147|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC008803|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC013882|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_005244|EYA2|2139|eyes absent homolog 2 (Drosophila)##NM_172110|EYA2|2139|eyes absent homolog 2 (Drosophila)##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8	0.993761	0.0	denovo_WM_7:44:0.708
chr21	43283308	43283432	reg1013640.p1	3.918	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-96103	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-96148	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-403287	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	16128	-	BC062323 AL833323 NM_199050	63419	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	90713	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	0.996414	0.0	denovo_WM_7:-78:0.727
chr7	135148724	135148840	reg1015405.p2	3.918	+	AB464251 AF513502 NM_182489	-232052	+	TSC_hg19_v1_chr7_-_134896270 AK001606 BX640957 NM_014149	-252491	-	TSC_hg19_v1_chr7_-_134896267 AF161534 AK022935	-252520	-	BC035590 U71267 U71268 AL389980 TSC_hg19_v1_chr7_-_135194851 AK314540 AK074493 AK300365 NM_001008225 NM_001190847 NM_001190848 NM_001190849 NM_001190850 NM_013316	46078	-	TSC_hg19_v1_chr7_+_135242675 NM_015135 BC136624 AK297307 BC146784 D86978	93906	+	TSC_hg19_v1_chr7_+_135347230 NM_001130929 BC063529 BC073942 BC021734 BC107765 BC047474 BC016741 BC040872	198479	+	AB464251|STRA8|346673|stimulated by retinoic acid gene 8 homolog (mouse)##AF513502|STRA8|346673|stimulated by retinoic acid gene 8 homolog (mouse)##NM_182489|STRA8|346673|stimulated by retinoic acid gene 8 homolog (mouse)##AK001606|WDR91|29062|WD repeat domain 91##BX640957|WDR91|29062|WD repeat domain 91##NM_014149|WDR91|29062|WD repeat domain 91##AF161534|WDR91|29062|WD repeat domain 91##AK022935|WDR91|29062|WD repeat domain 91##BC035590|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##U71267|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##U71268|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AL389980|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AK314540|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AK074493|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##AK300365|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001008225|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190847|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190848|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190849|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_001190850|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_013316|CNOT4|4850|CCR4-NOT transcription complex, subunit 4##NM_015135|NUP205|23165|nucleoporin 205kDa##BC136624|NUP205|23165|nucleoporin 205kDa##AK297307|NUP205|23165|nucleoporin 205kDa##BC146784|NUP205|23165|nucleoporin 205kDa##D86978|NUP205|23165|nucleoporin 205kDa##NM_001130929|C7orf73|647087|chromosome 7 open reading frame 73##BC063529|C7orf73|647087|chromosome 7 open reading frame 73##BC073942|C7orf73|647087|chromosome 7 open reading frame 73##BC021734|C7orf73|647087|chromosome 7 open reading frame 73##BC107765|C7orf73|647087|chromosome 7 open reading frame 73##BC047474|C7orf73|647087|chromosome 7 open reading frame 73##BC016741|C7orf73|647087|chromosome 7 open reading frame 73##BC040872|SLC13A4|26266|solute carrier family 13 (sodium/sulfate symporters), member 4	0.983194	0.0	denovo_WM_7:0:0.492	denovo_WM_7:-1:0.492
chr7	33096119	33096230	reg1011946.p2	3.918	+	BC015856 NM_001166118 NM_016489	-15655	-	TSC_hg19_v1_chr7_+_32997051 NM_007270 AK075331 AK128597 AK300328 AK293954 AK294266 BC101723 BC112053 AF089745	-99022	+	AF274938 TSC_hg19_v1_chr7_-_32982789 BC050570 BC036907	-113470	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	6148	-	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	52803	-	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	72907	+	BC015856|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001166118|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_016489|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_007270|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK075331|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK128597|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK300328|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK293954|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK294266|FKBP9|11328|FK506 binding protein 9, 63 kDa##BC101723|FKBP9|11328|FK506 binding protein 9, 63 kDa##BC112053|FKBP9|11328|FK506 binding protein 9, 63 kDa##AF089745|FKBP9|11328|FK506 binding protein 9, 63 kDa##AF274938|RP9P|441212|retinitis pigmentosa 9 pseudogene##BC050570|RP9P|441212|retinitis pigmentosa 9 pseudogene##BC036907|RP9P|441212|retinitis pigmentosa 9 pseudogene##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9	2.060091	0.0	
chrX	130036424	130036517	reg1003506.p1	3.918	+	TSC_hg19_v1_chrX_+_129535955 BC003676 NM_016024 AK292855 BC105582 BC012345 AL050405 BC033750 BC063517 BC010036 BC040433 BC050707	-500517	+	AY288416 BC101166 BC101167 BC101168 AB529244 HQ258187 BC095502 BC126179 BC126181 NM_178471	-517005	-	TSC_hg19_v1_chrX_+_129473927 AK304649 AK297499 AK309433 AK296155 NM_003951 NM_022810 BC119666 BC119667 AF155809 AF155810 AF155811 AY358099	-562438	+	TSC_hg19_v1_chrX_-_130037184 BC108713 AL133207 AK289812 AK289837	707	-	TSC_hg19_v1_chrX_-_130037207 AK000353 NM_006375 NM_182314	736	-	AK128203 NM_144967 AK296748 AX721074	155802	+	BC003676|RBMX2|51634|RNA binding motif protein, X-linked 2##NM_016024|RBMX2|51634|RNA binding motif protein, X-linked 2##AK292855|RBMX2|51634|RNA binding motif protein, X-linked 2##BC105582|RBMX2|51634|RNA binding motif protein, X-linked 2##BC012345|RBMX2|51634|RNA binding motif protein, X-linked 2##AL050405|RBMX2|51634|RNA binding motif protein, X-linked 2##BC033750|RBMX2|51634|RNA binding motif protein, X-linked 2##BC063517|RBMX2|51634|RNA binding motif protein, X-linked 2##BC010036|RBMX2|51634|RNA binding motif protein, X-linked 2##BC040433|RBMX2|51634|RNA binding motif protein, X-linked 2##BC050707|RBMX2|51634|RNA binding motif protein, X-linked 2##AY288416|GPR119|139760|G protein-coupled receptor 119##BC101166|GPR119|139760|G protein-coupled receptor 119##BC101167|GPR119|139760|G protein-coupled receptor 119##BC101168|GPR119|139760|G protein-coupled receptor 119##HQ258187|GPR119|139760|G protein-coupled receptor 119##BC095502|GPR119|139760|G protein-coupled receptor 119##BC126179|GPR119|139760|G protein-coupled receptor 119##BC126181|GPR119|139760|G protein-coupled receptor 119##NM_178471|GPR119|139760|G protein-coupled receptor 119##AK297499|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK309433|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK296155|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_003951|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_022810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119666|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119667|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155809|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155811|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY358099|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC108713|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AL133207|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289812|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK289837|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK000353|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_006375|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##NM_182314|ENOX2|10495|ecto-NOX disulfide-thiol exchanger 2##AK128203|ARHGAP36|158763|Rho GTPase activating protein 36##NM_144967|ARHGAP36|158763|Rho GTPase activating protein 36##AK296748|ARHGAP36|158763|Rho GTPase activating protein 36	0.010434	0.0	
chr12	133367659	133367777	reg1015418.p1	3.917	+	TSC_hg19_v1_chr12_-_133338419 BC043157 NM_015114	-29298	-	AK025933 TSC_hg19_v1_chr12_-_133306584	-61160	-	TSC_hg19_v1_chr12_+_133287427 NM_001170543 NM_001170544 NM_138575 EU249757 BC008196	-80282	+	BC048203 TSC_hg19_v1_chr12_-_133372555	4839	-	TSC_hg19_v1_chr12_-_133404955 D63997 AB027133	37261	-	TSC_hg19_v1_chr12_-_133405400 NM_005895	37580	-	BC043157|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_015114|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##AK025933|ANKLE2|23141|ankyrin repeat and LEM domain containing 2##NM_001170543|PGAM5|192111|phosphoglycerate mutase family member 5##NM_001170544|PGAM5|192111|phosphoglycerate mutase family member 5##NM_138575|PGAM5|192111|phosphoglycerate mutase family member 5##EU249757|PGAM5|192111|phosphoglycerate mutase family member 5##BC008196|PGAM5|192111|phosphoglycerate mutase family member 5##D63997|GOLGA3|2802|golgin A3##AB027133|GOLGA3|2802|golgin A3##NM_005895|GOLGA3|2802|golgin A3	1.993072	0.0	denovo_WM_7:-51:0.221	denovo_WM_7:-73:0.221
chr15	65704862	65705018	reg1010028.p1	3.917	+	BC042054 TSC_hg19_v1_chr15_-_65670341 BC067107 NM_004884	-34589	-	BC006389 NM_017851 TSC_hg19_v1_chr15_-_65579223 AK000516	-125780	-	BC035776 AF035408 AY358904 AK225652 AK225926 AK313352 TSC_hg19_v1_chr15_-_65503811 NM_003613	-201128	-	TSC_hg19_v1_chr15_-_65715258 AB529157	10305	-	TSC_hg19_v1_chr15_-_65715412 AB052622 NM_020962	10461	-	AY354202 BC040203 NM_197960 AK302638	104667	-	BC042054|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##BC067107|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##NM_004884|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##BC006389|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##NM_017851|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##AK000516|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##BC035776|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AF035408|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AY358904|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225652|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225926|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK313352|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##NM_003613|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AB052622|IGDCC4|57722|immunoglobulin superfamily, DCC subclass, member 4##NM_020962|IGDCC4|57722|immunoglobulin superfamily, DCC subclass, member 4##AY354202|DPP8|54878|dipeptidyl-peptidase 8##BC040203|DPP8|54878|dipeptidyl-peptidase 8##NM_197960|DPP8|54878|dipeptidyl-peptidase 8##AK302638|DPP8|54878|dipeptidyl-peptidase 8	1.33187	0.0	denovo_WM_7:-69:0.225	denovo_WM_7:-84:0.216
chr2	38861844	38862024	reg1016470.p2	3.917	+	AK000155 TSC_hg19_v1_chr2_-_38830104 AK292259 NM_001142650 NM_138394	-31793	-	TSC_hg19_v1_chr2_-_38830071 BC008217	-31862	-	TSC_hg19_v1_chr2_-_38830065 AY236963 BC017480 AK291462	-31894	-	NM_138801 TSC_hg19_v1_chr2_+_38893054	31118	+	BC019263 TSC_hg19_v1_chr2_+_38893258 AK291489 U11036 BC014916	31321	+	AB445102 BT006745 AB527733 AK091425 AX746975 AY513287 AF055270 BC000997 BC017369 BC017908 BC022328 TSC_hg19_v1_chr2_-_38978504 AK225141 AK293667 AK297161 L22253 AY166860 NM_001031684 NM_001195446	116582	-	AK000155|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK292259|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_001142650|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138394|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##BC008217|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AY236963|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##BC017480|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##AK291462|HNRPLL|92906|heterogeneous nuclear ribonucleoprotein L-like##NM_138801|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC019263|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AK291489|GALM|130589|galactose mutarotase (aldose 1-epimerase)##U11036|GALM|130589|galactose mutarotase (aldose 1-epimerase)##BC014916|GALM|130589|galactose mutarotase (aldose 1-epimerase)##AB445102|SRSF7|6432|serine/arginine-rich splicing factor 7##BT006745|SRSF7|6432|serine/arginine-rich splicing factor 7##AK091425|SRSF7|6432|serine/arginine-rich splicing factor 7##AY513287|SRSF7|6432|serine/arginine-rich splicing factor 7##AF055270|SRSF7|6432|serine/arginine-rich splicing factor 7##BC000997|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017369|SRSF7|6432|serine/arginine-rich splicing factor 7##BC017908|SRSF7|6432|serine/arginine-rich splicing factor 7##BC022328|SRSF7|6432|serine/arginine-rich splicing factor 7##AK225141|SRSF7|6432|serine/arginine-rich splicing factor 7##AK293667|SRSF7|6432|serine/arginine-rich splicing factor 7##AK297161|SRSF7|6432|serine/arginine-rich splicing factor 7##L22253|SRSF7|6432|serine/arginine-rich splicing factor 7##AY166860|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001031684|SRSF7|6432|serine/arginine-rich splicing factor 7##NM_001195446|SRSF7|6432|serine/arginine-rich splicing factor 7	0.0	0.0	
chr5	124288113	124288179	reg1013671.p2	3.917	+	BC131507 AB033107 BC151226 NM_020747	-207358	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1440264	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1529002	-	NM_001146319 AK316288 AK300154	1407668	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1470697	+	TSC_hg19_v1_chr5_+_125759088 AK024966 AK225829 BC008590 AK294656 AK293307 AK296267 AY116970	1471041	+	BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3##AK024966|GRAMD3|65983|GRAM domain containing 3##AK225829|GRAMD3|65983|GRAM domain containing 3##BC008590|GRAMD3|65983|GRAM domain containing 3##AK294656|GRAMD3|65983|GRAM domain containing 3##AK293307|GRAMD3|65983|GRAM domain containing 3##AK296267|GRAMD3|65983|GRAM domain containing 3##AY116970|GRAMD3|65983|GRAM domain containing 3	0.846644	0.0	denovo_WM_7:34:0.214	denovo_WM_7:35:0.474
chr18	4204422	4204553	reg1011682.p1	3.916	+	AK294777 AK294717 NM_001242762 NM_001242763	-329760	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-330203	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-359157	-	AK304101 TSC_hg19_v1_chr18_-_4455255	250766	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	250783	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	992765	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	1.008226	0.0	denovo_WM_7:40:0.765
chr18	56630890	56631070	reg1010957.p1	3.916	+	TSC_hg19_v1_chr18_+_56531281 BC036366	-99631	+	TSC_hg19_v1_chr18_+_56530714 AB046849	-100125	+	NM_018181 AF295077 BC130618 BC130620	-100861	+	TSC_hg19_v1_chr18_+_56807119 AK314107 AF212233 AK311213 NM_033280 AK295346 AK307127 BC009703 CU679449	176167	+	TSC_hg19_v1_chr18_+_56887389 AK307264 BC004488 NM_001012512 NM_001012513 NM_002091 K02054 DQ893451 DQ896223 AB528662 AB102889 BT006803	256463	+	BC051901 AF115392 NM_013435 AB593018	309674	-	BC036366|ZNF532|55205|zinc finger protein 532##AB046849|ZNF532|55205|zinc finger protein 532##NM_018181|ZNF532|55205|zinc finger protein 532##AF295077|ZNF532|55205|zinc finger protein 532##BC130618|ZNF532|55205|zinc finger protein 532##BC130620|ZNF532|55205|zinc finger protein 532##AK314107|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AF212233|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##NM_033280|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK295346|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307127|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##BC009703|SEC11C|90701|SEC11 homolog C (S. cerevisiae)##AK307264|GRP|2922|gastrin-releasing peptide##BC004488|GRP|2922|gastrin-releasing peptide##NM_001012512|GRP|2922|gastrin-releasing peptide##NM_001012513|GRP|2922|gastrin-releasing peptide##NM_002091|GRP|2922|gastrin-releasing peptide##K02054|GRP|2922|gastrin-releasing peptide##DQ893451|GRP|2922|gastrin-releasing peptide##DQ896223|GRP|2922|gastrin-releasing peptide##AB102889|GRP|2922|gastrin-releasing peptide##BT006803|GRP|2922|gastrin-releasing peptide##BC051901|RAX|30062|retina and anterior neural fold homeobox##AF115392|RAX|30062|retina and anterior neural fold homeobox##NM_013435|RAX|30062|retina and anterior neural fold homeobox##AB593018|RAX|30062|retina and anterior neural fold homeobox	0.996442	0.0	
chr3	112973928	112974043	reg1016879.p1	3.916	+	AY358328 NM_033254 AK309055	-42586	+	BC067743 TSC_hg19_v1_chr3_-_112738514 AK295954 AK293218 BC014673 NM_015412 CR749341	-235439	-	TSC_hg19_v1_chr3_-_112738512 AK301161 EU831596 EU831683 EU831956 EU832050 CU688320 AL117573 BC056663 AK295165 AK304022 AK024325 AK300811 AK304083	-235487	-	BC101582 BC113553 AK056472 NM_001164496 NM_018338	186354	-	TSC_hg19_v1_chr3_-_113233690 AK296160	259701	-	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	260008	-	AY358328|BOC|91653|Boc homolog (mouse)##NM_033254|BOC|91653|Boc homolog (mouse)##AK309055|BOC|91653|Boc homolog (mouse)##BC067743|C3orf17|25871|chromosome 3 open reading frame 17##AK295954|C3orf17|25871|chromosome 3 open reading frame 17##AK293218|C3orf17|25871|chromosome 3 open reading frame 17##BC014673|C3orf17|25871|chromosome 3 open reading frame 17##NM_015412|C3orf17|25871|chromosome 3 open reading frame 17##CR749341|C3orf17|25871|chromosome 3 open reading frame 17##AK301161|C3orf17|25871|chromosome 3 open reading frame 17##EU831596|C3orf17|25871|chromosome 3 open reading frame 17##EU831683|C3orf17|25871|chromosome 3 open reading frame 17##EU831956|C3orf17|25871|chromosome 3 open reading frame 17##EU832050|C3orf17|25871|chromosome 3 open reading frame 17##AL117573|C3orf17|25871|chromosome 3 open reading frame 17##BC056663|C3orf17|25871|chromosome 3 open reading frame 17##AK295165|C3orf17|25871|chromosome 3 open reading frame 17##AK304022|C3orf17|25871|chromosome 3 open reading frame 17##AK024325|C3orf17|25871|chromosome 3 open reading frame 17##AK300811|C3orf17|25871|chromosome 3 open reading frame 17##AK304083|C3orf17|25871|chromosome 3 open reading frame 17##BC101582|WDR52|55779|WD repeat domain 52##BC113553|WDR52|55779|WD repeat domain 52##AK056472|WDR52|55779|WD repeat domain 52##NM_001164496|WDR52|55779|WD repeat domain 52##NM_018338|WDR52|55779|WD repeat domain 52##AK296160|SPICE1|152185|spindle and centriole associated protein 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1	0.993136	0.0	denovo_WM_7:-22:0.956
chr4	154354397	154354529	reg1018543.p2	3.916	+	AK312172 BC032142 TSC_hg19_v1_chr4_+_154265868 AY028916	-88588	+	TSC_hg19_v1_chr4_+_154265799 NM_001253861 NM_032117	-88676	+	TSC_hg19_v1_chr4_+_154178530 BC025417	-175924	+	TSC_hg19_v1_chr4_+_154387511 NM_001131007 NM_015196 AK092270 AX747443 AK308448	33029	+	TSC_hg19_v1_chr4_+_154605403 AF424049 AF424050 AF424051 AF424052 AF424053	250935	+	TSC_hg19_v1_chr4_+_154605431 NM_003264	250967	+	AK312172|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC032142|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##AY028916|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_001253861|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##NM_032117|MND1|84057|meiotic nuclear divisions 1 homolog (S. cerevisiae)##BC025417|TRIM2|23321|tripartite motif containing 2##NM_001131007|KIAA0922|23240|KIAA0922##NM_015196|KIAA0922|23240|KIAA0922##AK092270|KIAA0922|23240|KIAA0922##AK308448|KIAA0922|23240|KIAA0922##AF424049|TLR2|7097|toll-like receptor 2##NM_003264|TLR2|7097|toll-like receptor 2	0.0	0.0	
chr6	39498452	39498607	reg1014335.p2	3.916	+	AF358909 AY253145 AY253146 AY253147 BC111860 NM_001135105 NM_001135106 NM_001135107 NM_032115 EU978943	-208190	-	AF358910 CU693040 DQ891712 DQ894889 EU978944 BC025726 AY358853 AF339912 AK310582 AK315273 NM_031460 NM_001135111	-216364	-	AF084830 BC060793 NM_003740 TSC_hg19_v1_chr6_-_39197252	-301289	-	BC117307 BC143444 BC143445 AK131471 NM_145027	194616	-	TSC_hg19_v1_chr6_+_39760140 AK091749 AX747160	261610	+	TSC_hg19_v1_chr6_+_39760151 AK310941 AB002379 NM_001201427 BC047575	261633	+	AF358909|KCNK16|83795|potassium channel, subfamily K, member 16##AY253145|KCNK16|83795|potassium channel, subfamily K, member 16##AY253146|KCNK16|83795|potassium channel, subfamily K, member 16##AY253147|KCNK16|83795|potassium channel, subfamily K, member 16##BC111860|KCNK16|83795|potassium channel, subfamily K, member 16##NM_001135105|KCNK16|83795|potassium channel, subfamily K, member 16##NM_001135106|KCNK16|83795|potassium channel, subfamily K, member 16##NM_001135107|KCNK16|83795|potassium channel, subfamily K, member 16##NM_032115|KCNK16|83795|potassium channel, subfamily K, member 16##EU978943|KCNK16|83795|potassium channel, subfamily K, member 16##AF358910|KCNK17|89822|potassium channel, subfamily K, member 17##DQ891712|KCNK17|89822|potassium channel, subfamily K, member 17##DQ894889|KCNK17|89822|potassium channel, subfamily K, member 17##EU978944|KCNK17|89822|potassium channel, subfamily K, member 17##BC025726|KCNK17|89822|potassium channel, subfamily K, member 17##AY358853|KCNK17|89822|potassium channel, subfamily K, member 17##AF339912|KCNK17|89822|potassium channel, subfamily K, member 17##AK310582|KCNK17|89822|potassium channel, subfamily K, member 17##AK315273|KCNK17|89822|potassium channel, subfamily K, member 17##NM_031460|KCNK17|89822|potassium channel, subfamily K, member 17##NM_001135111|KCNK17|89822|potassium channel, subfamily K, member 17##AF084830|KCNK5|8645|potassium channel, subfamily K, member 5##BC060793|KCNK5|8645|potassium channel, subfamily K, member 5##NM_003740|KCNK5|8645|potassium channel, subfamily K, member 5##BC117307|KIF6|221458|kinesin family member 6##BC143444|KIF6|221458|kinesin family member 6##BC143445|KIF6|221458|kinesin family member 6##AK131471|KIF6|221458|kinesin family member 6##NM_145027|KIF6|221458|kinesin family member 6##AK310941|DAAM2|23500|dishevelled associated activator of morphogenesis 2##AB002379|DAAM2|23500|dishevelled associated activator of morphogenesis 2##NM_001201427|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC047575|DAAM2|23500|dishevelled associated activator of morphogenesis 2	0.0	0.0	
chr9	109080457	109080581	reg1011981.p1	3.916	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-623601	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-623666	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-655762	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	544845	+	TSC_hg19_v1_chr9_+_109686439 CR749850	605950	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	965013	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.957758	0.0	denovo_WM_7:19:0.807
chr10	29574772	29574952	reg1015219.p2	3.915	+	TSC_hg19_v1_chr10_+_28966451 NM_012342 AK290639 BC019252 AK223065 U23070	-608415	+	TSC_hg19_v1_chr10_+_28878692 BC010356	-696156	+	AB590052 AK297460 TSC_hg19_v1_chr10_+_28822585	-752316	+	NM_032517 BC021730 AY358694	3154	+	TSC_hg19_v1_chr10_+_29698475 BC066966 BC050354	123607	+	BC107795 AK056080 TSC_hg19_v1_chr10_+_29698485	123623	+	NM_012342|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##AK290639|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##BC019252|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##AK223065|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##U23070|BAMBI|25805|BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)##BC010356|WAC|51322|WW domain containing adaptor with coiled-coil##AK297460|WAC|51322|WW domain containing adaptor with coiled-coil##NM_032517|LYZL1|84569|lysozyme-like 1##BC021730|LYZL1|84569|lysozyme-like 1##AY358694|LYZL1|84569|lysozyme-like 1##BC066966|LOC387647|387647|patched domain containing 3 pseudogene##BC050354|LOC387647|387647|patched domain containing 3 pseudogene##BC107795|LOC387647|387647|patched domain containing 3 pseudogene##AK056080|LOC387647|387647|patched domain containing 3 pseudogene	0.0	0.0	
chr1	2509811	2509925	reg1014749.p2	3.915	+	AK300515 NM_003820 U70321 AK303468 BC029848 BC002794 BC018882 U81232 AF153978 AK310076 AB208808 AY358879 CU678202 AB590572 DQ893000 DQ896755 AF373877 AF373878 CR456909	-21915	+	BC087840 DQ272660 NM_001010926	-48185	-	TSC_hg19_v1_chr1_-_2458040 AL442072 BC043496 AK001644 AK223546 AK303127 AK309860 NM_018216 AK295301	-51804	-	TSC_hg19_v1_chr1_+_2518261 NM_001195736 NM_001195737 NM_001195738 NM_001195740 NM_001195741 NM_152371 AK303504 AK291908 AK298926 AK075273 AF425266 BC022547 AK057027 AK308034 AK316243	8320	+	TSC_hg19_v1_chr1_+_2518534 AK094901	8646	+	AK093058 AX747891 NM_033467 TSC_hg19_v1_chr1_-_2564497	54597	-	AK300515|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##NM_003820|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U70321|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK303468|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC029848|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC002794|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC018882|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U81232|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF153978|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK310076|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AB208808|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AY358879|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ893000|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ896755|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373877|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373878|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##CR456909|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC087840|HES5|388585|hairy and enhancer of split 5 (Drosophila)##DQ272660|HES5|388585|hairy and enhancer of split 5 (Drosophila)##NM_001010926|HES5|388585|hairy and enhancer of split 5 (Drosophila)##AL442072|PANK4|55229|pantothenate kinase 4##BC043496|PANK4|55229|pantothenate kinase 4##AK001644|PANK4|55229|pantothenate kinase 4##AK223546|PANK4|55229|pantothenate kinase 4##AK303127|PANK4|55229|pantothenate kinase 4##AK309860|PANK4|55229|pantothenate kinase 4##NM_018216|PANK4|55229|pantothenate kinase 4##AK295301|PANK4|55229|pantothenate kinase 4##NM_001195736|FAM213B|127281|family with sequence similarity 213, member B##NM_001195737|FAM213B|127281|family with sequence similarity 213, member B##NM_001195738|FAM213B|127281|family with sequence similarity 213, member B##NM_001195740|FAM213B|127281|family with sequence similarity 213, member B##NM_001195741|FAM213B|127281|family with sequence similarity 213, member B##NM_152371|FAM213B|127281|family with sequence similarity 213, member B##AK303504|FAM213B|127281|family with sequence similarity 213, member B##AK291908|FAM213B|127281|family with sequence similarity 213, member B##AK298926|FAM213B|127281|family with sequence similarity 213, member B##AK075273|FAM213B|127281|family with sequence similarity 213, member B##AF425266|FAM213B|127281|family with sequence similarity 213, member B##BC022547|FAM213B|127281|family with sequence similarity 213, member B##AK057027|FAM213B|127281|family with sequence similarity 213, member B##AK308034|FAM213B|127281|family with sequence similarity 213, member B##AK316243|FAM213B|127281|family with sequence similarity 213, member B##AK094901|FAM213B|127281|family with sequence similarity 213, member B##AK093058|MMEL1|79258|membrane metallo-endopeptidase-like 1##NM_033467|MMEL1|79258|membrane metallo-endopeptidase-like 1	0.0	0.015152	
chr12	8782033	8782099	reg1013447.p1	3.915	+	AB040431 BC006296 NM_020661	-16627	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-88592	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-115835	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	33230	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	33335	-	AK124368 TSC_hg19_v1_chr12_-_8815486	33416	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	0.0	0.0	
chr14	61896839	61896970	reg1014484.p1	3.915	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-108377	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-148382	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-148710	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	265286	+	FJ790247 NM_001243084	267435	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	332215	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.0	0.0	
chr18	43762656	43762782	reg1013678.p1	3.915	+	TSC_hg19_v1_chr18_+_43754065 AK289738	-8637	+	TSC_hg19_v1_chr18_+_43754007 BC084579	-8704	+	TSC_hg19_v1_chr18_+_43754002 NM_001008239 NM_145055 AK292981	-8725	+	TSC_hg19_v1_chr18_+_43913942 AK055997	151213	+	AK091537 AK122819 AK127467 AX747044 NM_152470	151467	+	AK057232 BC047720 NM_001145473 NM_001173129	336321	-	AK289738|C18orf25|147339|chromosome 18 open reading frame 25##BC084579|C18orf25|147339|chromosome 18 open reading frame 25##NM_001008239|C18orf25|147339|chromosome 18 open reading frame 25##NM_145055|C18orf25|147339|chromosome 18 open reading frame 25##AK292981|C18orf25|147339|chromosome 18 open reading frame 25##AK055997|RNF165|494470|ring finger protein 165##AK091537|RNF165-IT1|147341|RNF165 intronic transcript 1 (non-protein coding)##AK122819|RNF165|494470|ring finger protein 165##AK127467|RNF165|494470|ring finger protein 165##NM_152470|RNF165|494470|ring finger protein 165##AK057232|LOXHD1|125336|lipoxygenase homology domains 1##BC047720|LOXHD1|125336|lipoxygenase homology domains 1##NM_001145473|LOXHD1|125336|lipoxygenase homology domains 1##NM_001173129|LOXHD1|125336|lipoxygenase homology domains 1	0.999566	0.0	
chr22	35693810	35693894	reg1017909.p1	3.915	+	NM_001003681 TSC_hg19_v1_chr22_+_35653477 AK299833 BC080611 BC052624 AJ010070 AL079310 BC062413 BC011723 BC017326 BC033783	-40376	+	TSC_hg19_v1_chr22_+_35462140 CR749372 AK025181 NM_001008494	-231703	+	AJ007583 AB011181 NM_004737 NM_133642	-1377482	-	AK293694 NM_001135729	1415	+	TSC_hg19_v1_chr22_+_35695855 NM_001135730 NM_001135732 NM_005488 AK026576 AJ006973 AY358980	1979	+	TSC_hg19_v1_chr22_+_35695886 AK097066 AK297827 AK295918 AK296670 AK314522 AK097926 CR456595 BC005144 BC040006 BC046151 AB463301 CU013195 CU013483 CU692314	2044	+	NM_001003681|HMGXB4|10042|HMG box domain containing 4##AK299833|HMGXB4|10042|HMG box domain containing 4##BC080611|HMGXB4|10042|HMG box domain containing 4##BC052624|HMGXB4|10042|HMG box domain containing 4##AJ010070|HMGXB4|10042|HMG box domain containing 4##AL079310|HMGXB4|10042|HMG box domain containing 4##BC062413|HMGXB4|10042|HMG box domain containing 4##BC011723|HMGXB4|10042|HMG box domain containing 4##BC017326|HMGXB4|10042|HMG box domain containing 4##BC033783|HMGXB4|10042|HMG box domain containing 4##CR749372|ISX|91464|intestine-specific homeobox##AK025181|ISX|91464|intestine-specific homeobox##NM_001008494|ISX|91464|intestine-specific homeobox##AJ007583|LARGE|9215|like-glycosyltransferase##AB011181|LARGE|9215|like-glycosyltransferase##NM_004737|LARGE|9215|like-glycosyltransferase##NM_133642|LARGE|9215|like-glycosyltransferase##AK293694|TOM1|10043|target of myb1 (chicken)##NM_001135729|TOM1|10043|target of myb1 (chicken)##NM_001135730|TOM1|10043|target of myb1 (chicken)##NM_001135732|TOM1|10043|target of myb1 (chicken)##NM_005488|TOM1|10043|target of myb1 (chicken)##AK026576|TOM1|10043|target of myb1 (chicken)##AJ006973|TOM1|10043|target of myb1 (chicken)##AY358980|TOM1|10043|target of myb1 (chicken)##AK097066|TOM1|10043|target of myb1 (chicken)##AK297827|TOM1|10043|target of myb1 (chicken)##AK295918|TOM1|10043|target of myb1 (chicken)##AK296670|TOM1|10043|target of myb1 (chicken)##AK314522|TOM1|10043|target of myb1 (chicken)##AK097926|TOM1|10043|target of myb1 (chicken)##CR456595|TOM1|10043|target of myb1 (chicken)##BC040006|TOM1|10043|target of myb1 (chicken)##BC046151|TOM1|10043|target of myb1 (chicken)##CU013195|TOM1|10043|target of myb1 (chicken)##CU013483|TOM1|10043|target of myb1 (chicken)	1.983264	0.0	denovo_WM_7:-29:0.924
chr2	26620813	26620929	reg1013378.p2	3.915	+	AK122995 AY358172 NM_153835	-51224	-	AB051511 TSC_hg19_v1_chr2_+_26569010 AB621826 BC021229 BC015430 CU676884	-51826	+	TSC_hg19_v1_chr2_+_26568975 NM_033505 AK095620	-51930	+	TSC_hg19_v1_chr2_+_26624787 AK057222 NM_145038 AK289953 AK307094	3926	+	AF107403 AF183186 AF183187 NM_004802 NM_194322 NM_194323	80038	-	AF183185 NM_194248	160694	-	AK122995|GPR113|165082|G protein-coupled receptor 113##AY358172|GPR113|165082|G protein-coupled receptor 113##NM_153835|GPR113|165082|G protein-coupled receptor 113##AB051511|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##BC021229|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##NM_033505|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AK095620|EPT1|85465|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)##AK057222|CCDC164|92749|coiled-coil domain containing 164##NM_145038|CCDC164|92749|coiled-coil domain containing 164##AK289953|CCDC164|92749|coiled-coil domain containing 164##AK307094|CCDC164|92749|coiled-coil domain containing 164##AF107403|OTOF|9381|otoferlin##AF183186|OTOF|9381|otoferlin##AF183187|OTOF|9381|otoferlin##NM_004802|OTOF|9381|otoferlin##NM_194322|OTOF|9381|otoferlin##NM_194323|OTOF|9381|otoferlin##AF183185|OTOF|9381|otoferlin##NM_194248|OTOF|9381|otoferlin	1.989601	0.0	denovo_WM_7:42:0.269	denovo_WM_7:43:0.224	denovo_WM_7:61:0.232	denovo_WM_7:62:0.277
chr4	77382005	77382152	reg1011005.p2	3.915	+	AB055660 NM_020859	-25826	+	BC035224 NM_001042784	-53621	-	TSC_hg19_v1_chr4_+_77227894 DQ891974 DQ895165 CU692542	-154177	+	AK027744 TSC_hg19_v1_chr4_+_77610613	228533	+	TSC_hg19_v1_chr4_+_77610738 AK304103	228673	+	NM_001029870 BC137241 BC137255	436961	-	AB055660|SHROOM3|57619|shroom family member 3##NM_020859|SHROOM3|57619|shroom family member 3##BC035224|CCDC158|339965|coiled-coil domain containing 158##NM_001042784|CCDC158|339965|coiled-coil domain containing 158##DQ891974|STBD1|8987|starch binding domain 1##DQ895165|STBD1|8987|starch binding domain 1##AK027744|SHROOM3|57619|shroom family member 3##AK304103|SHROOM3|57619|shroom family member 3##NM_001029870|ANKRD56|345079|ankyrin repeat domain 56##BC137241|ANKRD56|345079|ankyrin repeat domain 56##BC137255|ANKRD56|345079|ankyrin repeat domain 56	2.024132	0.0	denovo_WM_7:-87:0.330	denovo_WM_7:-88:0.330	denovo_WM_7:-89:0.330	denovo_WM_7:104:0.637
chr6	41499648	41499760	reg1014634.p1	3.915	+	NM_001199509 NM_001199510 NM_004828 AJ010099 AJ010100 BC166647	-196138	+	CU676054 DQ892009 DQ895198 AY074783 TSC_hg19_v1_chr6_-_41254418 AK223264 AK292162 AK301519 AK313104 BC017773 AF287008 NM_001242589 NM_001242590 NM_018643	-245280	-	AY358271 NM_198153 BC101780 BC105101 BC143652	-303636	+	TSC_hg19_v1_chr6_+_41514135 BC040962 NM_001012426 NM_001012427 NM_138457	14455	+	TSC_hg19_v1_chr6_+_41514342 BC052803	14633	+	TSC_hg19_v1_chr6_+_41606198 NM_005586 AK290735 BC007836 U78313	106518	+	NM_001199509|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_001199510|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_004828|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010099|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010100|NCR2|9436|natural cytotoxicity triggering receptor 2##BC166647|NCR2|9436|natural cytotoxicity triggering receptor 2##DQ892009|TREM1|54210|triggering receptor expressed on myeloid cells 1##DQ895198|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY074783|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK223264|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK292162|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK301519|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK313104|TREM1|54210|triggering receptor expressed on myeloid cells 1##BC017773|TREM1|54210|triggering receptor expressed on myeloid cells 1##AF287008|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242589|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242590|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_018643|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY358271|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##NM_198153|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC101780|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC105101|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC143652|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC040962|FOXP4|116113|forkhead box P4##NM_001012426|FOXP4|116113|forkhead box P4##NM_001012427|FOXP4|116113|forkhead box P4##NM_138457|FOXP4|116113|forkhead box P4##BC052803|FOXP4|116113|forkhead box P4##NM_005586|MDFI|4188|MyoD family inhibitor##AK290735|MDFI|4188|MyoD family inhibitor##BC007836|MDFI|4188|MyoD family inhibitor##U78313|MDFI|4188|MyoD family inhibitor	0.0	0.0	
chr11	109957932	109958055	reg1012973.p1	3.914	+	BC068577 TSC_hg19_v1_chr11_+_109292911 BC035798	-665094	+	TSC_hg19_v1_chr11_+_109292850 AK303693 NM_207645	-665150	+	TSC_hg19_v1_chr11_+_108535795 AK296752 BC091521 AB040537 NM_004398 U28042 AK315216 BC093654 BC093656 AB209884 BC064921 BC049217	-1422179	+	AK095101 TSC_hg19_v1_chr11_+_109963524	5535	+	NM_033390 AK295437 TSC_hg19_v1_chr11_+_109964174	6137	+	TSC_hg19_v1_chr11_-_110167340 BC002626 BC020751 BC047109 AK312903 AK316061 DQ916738 DQ916739 DQ916740 DQ916741 DQ916742 NM_002906	209320	-	BC068577|C11orf87|399947|chromosome 11 open reading frame 87##BC035798|C11orf87|399947|chromosome 11 open reading frame 87##AK303693|C11orf87|399947|chromosome 11 open reading frame 87##NM_207645|C11orf87|399947|chromosome 11 open reading frame 87##AK296752|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC091521|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB040537|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##NM_004398|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##U28042|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK315216|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093654|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093656|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB209884|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC064921|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC049217|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK095101|ZC3H12C|85463|zinc finger CCCH-type containing 12C##NM_033390|ZC3H12C|85463|zinc finger CCCH-type containing 12C##AK295437|ZC3H12C|85463|zinc finger CCCH-type containing 12C##BC002626|RDX|5962|radixin##BC020751|RDX|5962|radixin##BC047109|RDX|5962|radixin##AK312903|RDX|5962|radixin##AK316061|RDX|5962|radixin##DQ916738|RDX|5962|radixin##DQ916739|RDX|5962|radixin##DQ916740|RDX|5962|radixin##DQ916741|RDX|5962|radixin##DQ916742|RDX|5962|radixin##NM_002906|RDX|5962|radixin	0.0	0.0	
chr11	36442993	36443173	reg1007534.p2	3.914	+	NM_001160169	-20537	+	NM_001160168 NM_024841 BX640959 AK024275	-45523	+	NM_001160167 AK055042	-125303	+	TSC_hg19_v1_chr11_-_36531820 U78798 BC031052 AK292978 NM_004620 NM_145803	88731	-	NM_000448 M29474	146485	+	TSC_hg19_v1_chr11_+_36616072 AK290833 DQ121386 AK095997 AK299642 BC009561 BC051031 NM_138787 AK302634	173021	+	NM_001160169|PRR5L|79899|proline rich 5 like##NM_001160168|PRR5L|79899|proline rich 5 like##NM_024841|PRR5L|79899|proline rich 5 like##BX640959|PRR5L|79899|proline rich 5 like##AK024275|PRR5L|79899|proline rich 5 like##NM_001160167|PRR5L|79899|proline rich 5 like##AK055042|PRR5L|79899|proline rich 5 like##U78798|TRAF6|7189|TNF receptor-associated factor 6##BC031052|TRAF6|7189|TNF receptor-associated factor 6##AK292978|TRAF6|7189|TNF receptor-associated factor 6##NM_004620|TRAF6|7189|TNF receptor-associated factor 6##NM_145803|TRAF6|7189|TNF receptor-associated factor 6##NM_000448|RAG1|5896|recombination activating gene 1##M29474|RAG1|5896|recombination activating gene 1##AK290833|C11orf74|119710|chromosome 11 open reading frame 74##DQ121386|C11orf74|119710|chromosome 11 open reading frame 74##AK095997|C11orf74|119710|chromosome 11 open reading frame 74##AK299642|C11orf74|119710|chromosome 11 open reading frame 74##BC009561|C11orf74|119710|chromosome 11 open reading frame 74##BC051031|C11orf74|119710|chromosome 11 open reading frame 74##NM_138787|C11orf74|119710|chromosome 11 open reading frame 74##AK302634|C11orf74|119710|chromosome 11 open reading frame 74	1.938325	0.0	denovo_WM_7:11:0.846	denovo_WM_7:58:0.424	denovo_WM_7:62:0.318
chr11	64845695	64845829	reg1015366.p1	3.914	+	AB527189 TSC_hg19_v1_chr11_-_64826007 AJ012371 NM_005468 BC143643 BC143644	-19760	-	TSC_hg19_v1_chr11_+_64808404 BC007448 U79266	-37344	+	NM_013299 TSC_hg19_v1_chr11_+_64808377	-37381	+	DQ893251 DQ896580 TSC_hg19_v1_chr11_-_64851515 BC011000 AK291490	5738	-	TSC_hg19_v1_chr11_-_64851564 NM_080668	5823	-	TSC_hg19_v1_chr11_+_64851693 NM_006782 AF030291 AF001891 AK295279 AK316044 AK291964 AK308740	5944	+	AJ012371|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##NM_005468|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143643|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC143644|NAALADL1|10004|N-acetylated alpha-linked acidic dipeptidase-like 1##BC007448|SAC3D1|29901|SAC3 domain containing 1##U79266|SAC3D1|29901|SAC3 domain containing 1##NM_013299|SAC3D1|29901|SAC3 domain containing 1##DQ893251|CDCA5|113130|cell division cycle associated 5##DQ896580|CDCA5|113130|cell division cycle associated 5##BC011000|CDCA5|113130|cell division cycle associated 5##AK291490|CDCA5|113130|cell division cycle associated 5##NM_080668|CDCA5|113130|cell division cycle associated 5##NM_006782|ZFPL1|7542|zinc finger protein-like 1##AF030291|ZFPL1|7542|zinc finger protein-like 1##AF001891|ZFPL1|7542|zinc finger protein-like 1##AK295279|ZFPL1|7542|zinc finger protein-like 1##AK316044|ZFPL1|7542|zinc finger protein-like 1##AK291964|ZFPL1|7542|zinc finger protein-like 1##AK308740|ZFPL1|7542|zinc finger protein-like 1	0.0	0.015372	
chr1	168527083	168527170	reg1011498.p1	3.914	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-13909	-	AJ010277 NM_005149 BC093664 BC093666 EU446671	-276824	+	TSC_hg19_v1_chr1_+_168195262 BC068098 CU686619	-331833	+	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	18666	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	171303	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	548843	+	BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AJ010277|TBX19|9095|T-box 19##NM_005149|TBX19|9095|T-box 19##BC093664|TBX19|9095|T-box 19##BC093666|TBX19|9095|T-box 19##EU446671|TBX19|9095|T-box 19##BC068098|SFT2D2|375035|SFT2 domain containing 2##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide	0.0	0.0	
chr17	13463597	13463760	reg1012605.p2	3.914	+	TSC_hg19_v1_chr17_-_12921332 AK001392 NM_001165962 NM_018127 NM_173717	-542322	-	TSC_hg19_v1_chr17_-_12921325 AK298397 AK094687 BC001939 BC004158	-542359	-	TSC_hg19_v1_chr17_-_12921295 AK300011 AF304370 CR457261 CU674942	-542402	-	AY358838 TSC_hg19_v1_chr17_-_13505228 AF105376 NM_006042 AK292047	41559	-	TSC_hg19_v1_chr17_-_13972756 AK123100	509084	-	NM_001303 TSC_hg19_v1_chr17_+_13972839 AK312718	509101	+	AK001392|ELAC2|60528|elaC homolog 2 (E. coli)##NM_001165962|ELAC2|60528|elaC homolog 2 (E. coli)##NM_018127|ELAC2|60528|elaC homolog 2 (E. coli)##NM_173717|ELAC2|60528|elaC homolog 2 (E. coli)##AK298397|ELAC2|60528|elaC homolog 2 (E. coli)##AK094687|ELAC2|60528|elaC homolog 2 (E. coli)##BC001939|ELAC2|60528|elaC homolog 2 (E. coli)##BC004158|ELAC2|60528|elaC homolog 2 (E. coli)##AK300011|ELAC2|60528|elaC homolog 2 (E. coli)##AF304370|ELAC2|60528|elaC homolog 2 (E. coli)##CR457261|ELAC2|60528|elaC homolog 2 (E. coli)##AY358838|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AF105376|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_006042|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##AK292047|HS3ST3A1|9955|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1##NM_001303|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK312718|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	1.991622	0.0	denovo_WM_7:-47:0.270	denovo_WM_7:-48:0.727	denovo_WM_7:-63:0.860
chr19	6843984	6844062	reg1012099.p1	3.914	+	TSC_hg19_v1_chr19_+_6772811 AB590871	-71215	+	TSC_hg19_v1_chr19_+_6772718 NM_005428 AK225710 AK313307	-71299	+	TSC_hg19_v1_chr19_-_6767447 AK225386 AK292781 AK299406 AK310659 BC006281 AF124249 AY358406 NM_005490 AK290293	-76516	-	BC059395 NM_001974 X81479 AK297003 AK131562 AK290401 AK291518 AK313495 AK297011 CU687372	43574	+	NM_001136507	186570	+	NM_001164419	196160	-	NM_005428|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225710|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK313307|VAV1|7409|vav 1 guanine nucleotide exchange factor##AK225386|SH2D3A|10045|SH2 domain containing 3A##AK292781|SH2D3A|10045|SH2 domain containing 3A##AK299406|SH2D3A|10045|SH2 domain containing 3A##AK310659|SH2D3A|10045|SH2 domain containing 3A##BC006281|SH2D3A|10045|SH2 domain containing 3A##AF124249|SH2D3A|10045|SH2 domain containing 3A##AY358406|SH2D3A|10045|SH2 domain containing 3A##NM_005490|SH2D3A|10045|SH2 domain containing 3A##AK290293|SH2D3A|10045|SH2 domain containing 3A##BC059395|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001974|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##X81479|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297003|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK131562|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK290401|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK291518|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK313495|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##AK297011|EMR1|2015|egf-like module containing, mucin-like, hormone receptor-like 1##NM_001136507|MBD3L5|284428|methyl-CpG binding domain protein 3-like 5##NM_001164419|MBD3L4|653656|methyl-CpG binding domain protein 3-like 4	3.038846	0.0	denovo_WM_7:34:0.224	denovo_WM_7:54:0.761	denovo_WM_7:69:0.515	denovo_WM_7:70:0.308	denovo_WM_7:84:0.283	denovo_WM_7:85:0.590
chr20	43213274	43213423	reg1003065.p2	3.914	+	AK309209 TSC_hg19_v1_chr20_+_43211227	-2125	+	NM_007066 NM_181804 NM_181805 BC104256 BC104257 TSC_hg19_v1_chr20_+_43160482 AK312048 AF182032	-52832	+	AK295120 AK309993 TSC_hg19_v1_chr20_-_43150704 NM_006811 NM_198941	-62641	-	AB528992 DQ892681 DQ895924 TSC_hg19_v1_chr20_-_43280341 X02994 AK223397	66950	-	BC007678 TSC_hg19_v1_chr20_-_43280372 BC040226 NM_000022	67027	-	BC058074 TSC_hg19_v1_chr20_+_43343549 AK074695	130194	+	AK309209|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_007066|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_181804|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##NM_181805|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC104256|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##BC104257|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AK312048|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AF182032|PKIG|11142|protein kinase (cAMP-dependent, catalytic) inhibitor gamma##AK295120|SERINC3|10955|serine incorporator 3##AK309993|SERINC3|10955|serine incorporator 3##NM_006811|SERINC3|10955|serine incorporator 3##NM_198941|SERINC3|10955|serine incorporator 3##DQ892681|ADA|100|adenosine deaminase##DQ895924|ADA|100|adenosine deaminase##X02994|ADA|100|adenosine deaminase##AK223397|ADA|100|adenosine deaminase##BC007678|ADA|100|adenosine deaminase##BC040226|ADA|100|adenosine deaminase##NM_000022|ADA|100|adenosine deaminase##BC058074|WISP2|8839|WNT1 inducible signaling pathway protein 2	1.233219	0.0	denovo_WM_7:23:0.815
chr21	26829077	26829201	reg1014934.p1	3.914	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1028071	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4458366	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4458449	+	TSC_hg19_v1_chr21_+_26934442 AF402776	105333	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	150676	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	182514	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.0	0.0	
chr15	41721672	41721848	reg1010519.p2	3.913	+	TSC_hg19_v1_chr15_+_41709329 NM_015138 AK292302 D87440 BC015052 AB383821	-12400	+	AF151823 BC000780 NM_016013 AK310033 AK310983 AK309889 TSC_hg19_v1_chr15_-_41694659	-27098	-	CU680432 AF305711 TSC_hg19_v1_chr15_+_41625177	-96595	+	NM_002220 TSC_hg19_v1_chr15_+_41786071 BC026331 X54938 AB463780	64330	+	BC143903 D16105 AK314006 BC045607 X60702 AK296892 NM_001135685 NM_002344 NM_206961	84278	-	AB037824 TSC_hg19_v1_chr15_-_41836456 AK290224 BC000246	114689	-	NM_015138|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AK292302|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##D87440|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##BC015052|RTF1|23168|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)##AF151823|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##BC000780|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##NM_016013|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310033|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK310983|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AK309889|NDUFAF1|51103|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1##AF305711|NUSAP1|51203|nucleolar and spindle associated protein 1##NM_002220|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC026331|ITPKA|3706|inositol-trisphosphate 3-kinase A##X54938|ITPKA|3706|inositol-trisphosphate 3-kinase A##BC143903|LTK|4058|leukocyte receptor tyrosine kinase##D16105|LTK|4058|leukocyte receptor tyrosine kinase##AK314006|LTK|4058|leukocyte receptor tyrosine kinase##BC045607|LTK|4058|leukocyte receptor tyrosine kinase##X60702|LTK|4058|leukocyte receptor tyrosine kinase##AK296892|LTK|4058|leukocyte receptor tyrosine kinase##NM_001135685|LTK|4058|leukocyte receptor tyrosine kinase##NM_002344|LTK|4058|leukocyte receptor tyrosine kinase##NM_206961|LTK|4058|leukocyte receptor tyrosine kinase##AB037824|RPAP1|26015|RNA polymerase II associated protein 1##AK290224|RPAP1|26015|RNA polymerase II associated protein 1##BC000246|RPAP1|26015|RNA polymerase II associated protein 1	0.0	0.0	
chr16	8106633	8106706	reg1012658.p2	3.913	+	AF094849 AF109106 AF229057 NM_145891 NM_145892 NM_145893	-723919	+	AK001027 NM_001142334	-1282860	+	TSC_hg19_v1_chr16_+_6533765 BC033885	-1572894	+	TSC_hg19_v1_chr16_+_8715563 NM_024109 AK315383 BC001908 AK022495	608871	+	TSC_hg19_v1_chr16_+_8768473 NM_020686 BX537362 AK096146 BC031413 BC015628	661793	+	NM_000663 TSC_hg19_v1_chr16_+_8806841 BC013965	700166	+	AF094849|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF109106|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AF229057|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145891|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145892|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_145893|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##AK001027|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_001142334|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##BC033885|RBFOX1|54715|RNA binding protein, fox-1 homolog (C. elegans) 1##NM_024109|METTL22|79091|methyltransferase like 22##AK315383|METTL22|79091|methyltransferase like 22##BC001908|METTL22|79091|methyltransferase like 22##AK022495|METTL22|79091|methyltransferase like 22##NM_020686|ABAT|18|4-aminobutyrate aminotransferase##BX537362|ABAT|18|4-aminobutyrate aminotransferase##AK096146|ABAT|18|4-aminobutyrate aminotransferase##BC031413|ABAT|18|4-aminobutyrate aminotransferase##BC015628|ABAT|18|4-aminobutyrate aminotransferase##NM_000663|ABAT|18|4-aminobutyrate aminotransferase##BC013965|ABAT|18|4-aminobutyrate aminotransferase	0.0	0.0	
chr2	216176567	216176747	reg1004640.p2	3.913	+	BC144073 AY219711 NM_173076	-173548	-	AY033486 NM_015657	-279848	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	-502298	-	NM_004044 TSC_hg19_v1_chr2_+_216176781 AK313066 D82348 AK298142	81	+	D89976 TSC_hg19_v1_chr2_+_216176813	155	+	TSC_hg19_v1_chr2_+_216176824 AB062403 BC008879 AB590190 DQ893262 DQ896591 CU679167	184	+	BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##NM_004044|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK313066|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D82348|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK298142|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D89976|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AB062403|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##BC008879|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ893262|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ896591|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	0.0	0.0	
chr2	231576995	231577175	reg1008853.p1	3.913	+	AK091898 NM_001206704	-295615	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-296129	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-296166	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	461	+	TSC_hg19_v1_chr2_+_231577633 BC020570	559	+	AK292382 NM_001130849 NM_001130850 AK315692	1193	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.0	0.0	
chr3	75718382	75718508	reg1016804.p1	3.913	+	AK000525 NM_001124759	-4962	+	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	-234296	-	AB384611 BC150608 NM_020872	-1148143	-	BC111371 TSC_hg19_v1_chr3_+_75721431 BC039495	3041	+	NM_001128223	115809	-	TSC_hg19_v1_chr3_-_75834698 AK123776	116257	-	AK000525|FLJ20518|647476|FSHD region gene 2 family, member C pseudogene##NM_001124759|FRG2C|100288801|FSHD region gene 2 family, member C##BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC111371|LOC401074|401074|uncharacterized LOC401074##BC039495|LOC401074|401074|uncharacterized LOC401074##NM_001128223|ZNF717|100131827|zinc finger protein 717##AK123776|ZNF717|100131827|zinc finger protein 717	0.0	0.0	
chrX	123096080	123096175	reg1014175.p1	3.913	+	TSC_hg19_v1_chrX_+_123095638 BC001765	-490	+	NM_001042750 NM_001042751 NM_006603 TSC_hg19_v1_chrX_+_123095573 AL831939 BX641002 CR749433 BX641003	-554	+	TSC_hg19_v1_chrX_+_123094397 NM_001042749 AK098737 BX640970 AK298633 AK313559	-1603	+	AK026678 TSC_hg19_v1_chrX_+_123234596	138403	+	NM_001114937 NM_002351 AL023657 AK311645	384048	+	HE578281 BC140783 BC144542 BC144543 AF100772 NM_001163278 NM_001163279 NM_014253	1001506	-	BC001765|STAG2|10735|stromal antigen 2##NM_001042750|STAG2|10735|stromal antigen 2##NM_001042751|STAG2|10735|stromal antigen 2##NM_006603|STAG2|10735|stromal antigen 2##AL831939|STAG2|10735|stromal antigen 2##BX641002|STAG2|10735|stromal antigen 2##CR749433|STAG2|10735|stromal antigen 2##BX641003|STAG2|10735|stromal antigen 2##NM_001042749|STAG2|10735|stromal antigen 2##AK098737|STAG2|10735|stromal antigen 2##BX640970|STAG2|10735|stromal antigen 2##AK298633|STAG2|10735|stromal antigen 2##AK313559|STAG2|10735|stromal antigen 2##AK026678|STAG2|10735|stromal antigen 2##NM_001114937|SH2D1A|4068|SH2 domain containing 1A##NM_002351|SH2D1A|4068|SH2 domain containing 1A##AL023657|SH2D1A|4068|SH2 domain containing 1A##AK311645|SH2D1A|4068|SH2 domain containing 1A##BC140783|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##BC144542|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##BC144543|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##AF100772|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001163278|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_001163279|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)##NM_014253|ODZ1|10178|odz, odd Oz/ten-m homolog 1 (Drosophila)	0.0	0.0	
chrX	34596523	34596648	reg1011894.p1	3.913	+	BC026171 AK292354 NM_203408	-446149	-	NM_000109	-1238860	-	S60972 X14298 AK309142 TSC_hg19_v1_chrX_-_33229631 M18533 BC010932 NM_004006	-1367035	-	TSC_hg19_v1_chrX_-_34675406 BC039242 NM_031442	78823	-	BC035026 NM_152631 AK093101 AX747923 CU690032	364344	+	NM_001099921	1219873	+	BC026171|FAM47A|158724|family with sequence similarity 47, member A##AK292354|FAM47A|158724|family with sequence similarity 47, member A##NM_203408|FAM47A|158724|family with sequence similarity 47, member A##NM_000109|DMD|1756|dystrophin##S60972|DMD|1756|dystrophin##X14298|DMD|1756|dystrophin##AK309142|DMD|1756|dystrophin##M18533|DMD|1756|dystrophin##BC010932|DMD|1756|dystrophin##NM_004006|DMD|1756|dystrophin##BC039242|TMEM47|83604|transmembrane protein 47##NM_031442|TMEM47|83604|transmembrane protein 47##BC035026|FAM47B|170062|family with sequence similarity 47, member B##NM_152631|FAM47B|170062|family with sequence similarity 47, member B##AK093101|FAM47B|170062|family with sequence similarity 47, member B##NM_001099921|MAGEB16|139604|melanoma antigen family B, 16	0.835035	0.039529	denovo_WM_7:0:0.835
chr12	87378278	87378360	reg1017301.p1	3.912	+	BC035851 NM_013244	-145662	-	AK312066 NM_006183 BC010918 AF157682 U91618 AB587429 CR541936 CU679849	-1110193	+	AK022089 TSC_hg19_v1_chr12_-_86230188 NM_005447	-1148082	-	AL833338 BC062424 AK093140 AX747948 NM_152589	1044841	-	TSC_hg19_v1_chr12_+_88429312 AK095477 NM_001009894 CR936776 AK311222 BC058014 BX640968 BX537868 BX648026 AK311153 BC035136 BC092422 AB590923 AM392924 AL137488	1051067	+	BC043398 TSC_hg19_v1_chr12_-_88535871 AK023677 DQ109808 NM_025114	1157550	-	BC035851|MGAT4C|25834|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)##NM_013244|MGAT4C|25834|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)##AK312066|NTS|4922|neurotensin##NM_006183|NTS|4922|neurotensin##BC010918|NTS|4922|neurotensin##AF157682|NTS|4922|neurotensin##U91618|NTS|4922|neurotensin##CR541936|NTS|4922|neurotensin##AK022089|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##NM_005447|RASSF9|9182|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9##AL833338|C12orf50|160419|chromosome 12 open reading frame 50##BC062424|C12orf50|160419|chromosome 12 open reading frame 50##AK093140|C12orf50|160419|chromosome 12 open reading frame 50##NM_152589|C12orf50|160419|chromosome 12 open reading frame 50##AK095477|C12orf29|91298|chromosome 12 open reading frame 29##NM_001009894|C12orf29|91298|chromosome 12 open reading frame 29##CR936776|C12orf29|91298|chromosome 12 open reading frame 29##AK311222|C12orf29|91298|chromosome 12 open reading frame 29##BC058014|C12orf29|91298|chromosome 12 open reading frame 29##BX640968|C12orf29|91298|chromosome 12 open reading frame 29##BX537868|C12orf29|91298|chromosome 12 open reading frame 29##BX648026|C12orf29|91298|chromosome 12 open reading frame 29##AK311153|C12orf29|91298|chromosome 12 open reading frame 29##BC035136|C12orf29|91298|chromosome 12 open reading frame 29##BC092422|C12orf29|91298|chromosome 12 open reading frame 29##AM392924|C12orf29|91298|chromosome 12 open reading frame 29##AL137488|C12orf29|91298|chromosome 12 open reading frame 29##BC043398|CEP290|80184|centrosomal protein 290kDa##AK023677|CEP290|80184|centrosomal protein 290kDa##DQ109808|CEP290|80184|centrosomal protein 290kDa##NM_025114|CEP290|80184|centrosomal protein 290kDa	0.0	0.0	
chr1	42119822	42119954	reg1004114.p2	3.912	+	BC034393 X55177 M65199 NM_001956	-169569	-	TSC_hg19_v1_chr1_-_41707792 BX640721 NM_001172218 NM_001172219 NM_001172220 NM_012236	-412052	-	AK023124 TSC_hg19_v1_chr1_-_41707790 AF149045 AF149046	-412103	-	TSC_hg19_v1_chr1_-_42384357 BC040942	264454	-	TSC_hg19_v1_chr1_-_42384376 AB046775 BC152563 NM_001127714 NM_024503	264485	-	TSC_hg19_v1_chr1_-_42501606 BC046120	381741	-	BC034393|EDN2|1907|endothelin 2##X55177|EDN2|1907|endothelin 2##M65199|EDN2|1907|endothelin 2##NM_001956|EDN2|1907|endothelin 2##BX640721|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172218|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172219|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_001172220|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##NM_012236|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AK023124|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149045|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##AF149046|SCMH1|22955|sex comb on midleg homolog 1 (Drosophila)##BC040942|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##AB046775|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC152563|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_001127714|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##NM_024503|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3##BC046120|HIVEP3|59269|human immunodeficiency virus type I enhancer binding protein 3	0.0	0.0	
chr18	33880739	33880868	reg1011353.p1	3.912	+	TSC_hg19_v1_chr18_+_33877676 AK128053 NM_025135 AB084087 HM191478	-3089	+	TSC_hg19_v1_chr18_+_33767481 NM_017947 AK000740 BC012079 AK222886 DQ895841 EU176372	-113327	+	TSC_hg19_v1_chr18_+_33709886 AK300201 BC032553 AK222791 AK001741 BC007098 AB590856 CU689420 CR457269	-170915	+	TSC_hg19_v1_chr18_-_34408744 AB463512 BC022199 AK000543	527960	-	TSC_hg19_v1_chr18_-_34408937 AK295817 BC015178	528091	-	AB073382 TSC_hg19_v1_chr18_-_34408948	528149	-	AK128053|FHOD3|80206|formin homology 2 domain containing 3##NM_025135|FHOD3|80206|formin homology 2 domain containing 3##AB084087|FHOD3|80206|formin homology 2 domain containing 3##HM191478|FHOD3|80206|formin homology 2 domain containing 3##NM_017947|MOCOS|55034|molybdenum cofactor sulfurase##AK000740|MOCOS|55034|molybdenum cofactor sulfurase##BC012079|MOCOS|55034|molybdenum cofactor sulfurase##AK222886|MOCOS|55034|molybdenum cofactor sulfurase##DQ895841|MOCOS|55034|molybdenum cofactor sulfurase##EU176372|MOCOS|55034|molybdenum cofactor sulfurase##AK300201|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC032553|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK222791|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK001741|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC007098|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##CR457269|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC022199|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK000543|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK295817|TPGS2|25941|tubulin polyglutamylase complex subunit 2##BC015178|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AB073382|TPGS2|25941|tubulin polyglutamylase complex subunit 2	1.84649	0.0	denovo_WM_7:74:0.401	denovo_WM_7:76:0.416	denovo_WM_7:-99:0.613	denovo_WM_7:-101:0.358
chr3	134529061	134529158	reg1016331.p2	3.912	+	TSC_hg19_v1_chr3_+_134514301 BC111744	-14808	+	TSC_hg19_v1_chr3_+_134514101 NM_004441 AK291208 AK309741 L40636	-14958	+	BC136349 AK293840 AK294500 AK090526 AK126993 AX746495 NM_178554 TSC_hg19_v1_chr3_-_134369865	-159264	-	TSC_hg19_v1_chr3_+_135684569 NM_001190447 NM_002718 AK293012 BC015034 BC065531 AK298059 AK314243	1155422	+	BC029409 TSC_hg19_v1_chr3_+_135684606 L07590	1155511	+	NM_181897 AK316258 L12146	1212509	+	BC111744|EPHB1|2047|EPH receptor B1##NM_004441|EPHB1|2047|EPH receptor B1##AK291208|EPHB1|2047|EPH receptor B1##AK309741|EPHB1|2047|EPH receptor B1##L40636|EPHB1|2047|EPH receptor B1##BC136349|KY|339855|kyphoscoliosis peptidase##AK293840|KY|339855|kyphoscoliosis peptidase##AK294500|KY|339855|kyphoscoliosis peptidase##AK090526|KY|339855|kyphoscoliosis peptidase##AK126993|KY|339855|kyphoscoliosis peptidase##NM_178554|KY|339855|kyphoscoliosis peptidase##NM_001190447|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_002718|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK293012|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC015034|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC065531|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK298059|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK314243|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC029409|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L07590|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha	0.0	0.0	
chr3	49292473	49292605	reg1010937.p1	3.912	+	AK303033 NM_001135197 BC015057 AK058049	-55579	+	BC036202 NM_178173	-56679	+	NM_001080528	-63249	-	BC032616 CU687502 CU691014 AK125642 BC061697 BC053629 NM_198562	21855	-	TSC_hg19_v1_chr3_-_49377456 AF017306	84908	-	AF017305 U20657 TSC_hg19_v1_chr3_-_49377473 AK222725 AK223292 BC068017	84929	-	AK303033|CCDC36|339834|coiled-coil domain containing 36##NM_001135197|CCDC36|339834|coiled-coil domain containing 36##BC015057|CCDC36|339834|coiled-coil domain containing 36##AK058049|CCDC36|339834|coiled-coil domain containing 36##BC036202|CCDC36|339834|coiled-coil domain containing 36##NM_178173|CCDC36|339834|coiled-coil domain containing 36##NM_001080528|LOC646498|646498|uncharacterized LOC646498##BC032616|C3orf62|375341|chromosome 3 open reading frame 62##AK125642|C3orf62|375341|chromosome 3 open reading frame 62##BC061697|C3orf62|375341|chromosome 3 open reading frame 62##BC053629|C3orf62|375341|chromosome 3 open reading frame 62##NM_198562|C3orf62|375341|chromosome 3 open reading frame 62##AF017306|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AF017305|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##U20657|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK222725|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK223292|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##BC068017|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)	0.988566	0.0	denovo_WM_7:-32:0.511	denovo_WM_7:-35:0.341
chr4	57684353	57684432	reg1013932.p2	3.912	+	AF492675 NM_001145460 NM_032495 NM_139212	-136534	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	-161814	-	AB019573 AB463756 AM393649 DQ892193 EU176669 TSC_hg19_v1_chr4_-_57522247	-162235	-	CR542135 DQ895533 EU176199 TSC_hg19_v1_chr4_-_57687883 AK312222 NM_021114 X57655 BC022514 GU727622	3473	-	TSC_hg19_v1_chr4_+_57774035 NM_005612	89663	+	TSC_hg19_v1_chr4_+_57774090 BC038985 U13879 U22680	89771	+	AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##AB019573|HOPX|84525|HOP homeobox##AM393649|HOPX|84525|HOP homeobox##DQ892193|HOPX|84525|HOP homeobox##EU176669|HOPX|84525|HOP homeobox##CR542135|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##DQ895533|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##EU176199|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AK312222|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_021114|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##X57655|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##BC022514|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##GU727622|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_005612|REST|5978|RE1-silencing transcription factor##BC038985|REST|5978|RE1-silencing transcription factor##U13879|REST|5978|RE1-silencing transcription factor	0.0	0.0	
chr8	102923467	102923590	reg1016837.p1	3.912	+	NM_032041	-120090	-	AK055073 AK314523 TSC_hg19_v1_chr8_-_102803198	-120328	-	AB209015 TSC_hg19_v1_chr8_-_102803178 AL136612	-120345	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	212995	-	NM_001040630	213606	-	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	327645	-	NM_032041|NCALD|83988|neurocalcin delta##AK055073|NCALD|83988|neurocalcin delta##AK314523|NCALD|83988|neurocalcin delta##AB209015|NCALD|83988|neurocalcin delta##AL136612|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##NM_001040630|NCALD|83988|neurocalcin delta##AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)	2.335159	0.0	denovo_WM_7:49:0.508	denovo_WM_7:52:0.341	denovo_WM_7:67:0.860
chr9	98310262	98310365	reg1011293.p1	3.912	+	AB189436 AB189437 NM_001083602 NM_001083603 BC043542	-31021	-	AB212827 AB212828 AB239329 TSC_hg19_v1_chr9_-_98279070	-31309	-	NM_000264 TSC_hg19_v1_chr9_-_98270933	-39429	-	TSC_hg19_v1_chr9_-_98637744 AF170307	327439	-	TSC_hg19_v1_chr9_-_98637839 AK092137 AX747374	327540	-	NM_001010895 TSC_hg19_v1_chr9_+_98637942 AK129624 AK308409 AL389953	327628	+	AB189436|PTCH1|5727|patched 1##AB189437|PTCH1|5727|patched 1##NM_001083602|PTCH1|5727|patched 1##NM_001083603|PTCH1|5727|patched 1##BC043542|PTCH1|5727|patched 1##AB212827|PTCH1|5727|patched 1##AB212828|PTCH1|5727|patched 1##AB239329|PTCH1|5727|patched 1##NM_000264|PTCH1|5727|patched 1##AF170307|LINC00476|100128782|long intergenic non-protein coding RNA 476##AK092137|LINC00476|100128782|long intergenic non-protein coding RNA 476##NM_001010895|C9orf102|375748|chromosome 9 open reading frame 102##AK308409|C9orf102|375748|chromosome 9 open reading frame 102##AL389953|C9orf102|375748|chromosome 9 open reading frame 102	1.37148	0.0	
chr10	22242889	22243069	reg1000336.p2	3.911	+	AY598745 CU687346 NM_001195626 AF060929 AF060934 AF060935 AF060936 AF060937 AF060938	-419354	+	TSC_hg19_v1_chr10_+_21823382 AB209755 BC052798 BC094844 BC129946	-419585	+	U13948 TSC_hg19_v1_chr10_+_21823274 BC065376 BC080577	-419703	+	AY225122 AK027263 TSC_hg19_v1_chr10_-_22292522 BC014436	49470	-	TSC_hg19_v1_chr10_-_22292660 BC110894 NM_022365 AK308369	49686	-	NM_001199938	255932	-	AY598745|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##NM_001195626|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060929|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060934|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060935|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060936|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060937|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AF060938|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AB209755|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC052798|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC094844|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC129946|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##U13948|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC065376|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##BC080577|MLLT10|8028|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10##AY225122|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK027263|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC014436|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##BC110894|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_022365|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##AK308369|DNAJC1|64215|DnaJ (Hsp40) homolog, subfamily C, member 1##NM_001199938|EBLN1|340900|endogenous Bornavirus-like nucleoprotein 1	0.0	0.0	
chr1	170632658	170632838	reg1012786.p2	3.911	+	TSC_hg19_v1_chr1_+_170632302 AK225968	-458	+	TSC_hg19_v1_chr1_+_170501309 AK308339 NM_001146039 NM_152281 AK021814 BC064945 CU687974 BC047476 AK057661	-131445	+	BC157860 BC171858 NM_001136107	-517561	+	BC074993 NM_006902 NM_022716 EU446648 AB527492 AB451463 TSC_hg19_v1_chr1_+_170633380 M95929	614	+	NM_001163629 NM_025063 AK027203 BC113390 BC113392	271899	+	NM_001002294 NM_006894 AK223166 TSC_hg19_v1_chr1_+_171060044 AK298406 Z47552 AK298456 AK296105 AK310785 AK313197 BC032016	427293	+	AK225968|PRRX1|5396|paired related homeobox 1##AK308339|GORAB|92344|golgin, RAB6-interacting##NM_001146039|GORAB|92344|golgin, RAB6-interacting##NM_152281|GORAB|92344|golgin, RAB6-interacting##AK021814|GORAB|92344|golgin, RAB6-interacting##BC064945|GORAB|92344|golgin, RAB6-interacting##BC047476|GORAB|92344|golgin, RAB6-interacting##AK057661|GORAB|92344|golgin, RAB6-interacting##BC157860|METTL11B|149281|methyltransferase like 11B##BC171858|METTL11B|149281|methyltransferase like 11B##NM_001136107|METTL11B|149281|methyltransferase like 11B##BC074993|PRRX1|5396|paired related homeobox 1##NM_006902|PRRX1|5396|paired related homeobox 1##NM_022716|PRRX1|5396|paired related homeobox 1##EU446648|PRRX1|5396|paired related homeobox 1##AB451463|PRRX1|5396|paired related homeobox 1##NM_001163629|C1orf129|80133|chromosome 1 open reading frame 129##NM_025063|C1orf129|80133|chromosome 1 open reading frame 129##AK027203|C1orf129|80133|chromosome 1 open reading frame 129##BC113390|C1orf129|80133|chromosome 1 open reading frame 129##BC113392|C1orf129|80133|chromosome 1 open reading frame 129##NM_001002294|FMO3|2328|flavin containing monooxygenase 3##NM_006894|FMO3|2328|flavin containing monooxygenase 3##AK223166|FMO3|2328|flavin containing monooxygenase 3##AK298406|FMO3|2328|flavin containing monooxygenase 3##Z47552|FMO3|2328|flavin containing monooxygenase 3##AK296105|FMO3|2328|flavin containing monooxygenase 3##AK310785|FMO3|2328|flavin containing monooxygenase 3##AK313197|FMO3|2328|flavin containing monooxygenase 3##BC032016|FMO3|2328|flavin containing monooxygenase 3	0.729021	0.0	denovo_WM_7:-102:0.378
chr12	94651888	94652015	reg1013935.p1	3.911	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	-109447	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-580768	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-686350	-	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	201580	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	201691	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	201781	-	AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41	0.809166	0.0	denovo_WM_7:-40:0.557
chr16	67062332	67062512	reg1009054.p2	3.911	+	NM_001190201 NM_001190202 TSC_hg19_v1_chr16_+_67034441 AK094783 AK300792 AK295483 BC041823 BC064573	-27874	+	AK293061 NM_173815 AK296064	-39893	+	AK025389 NM_001185176	-61045	+	TSC_hg19_v1_chr16_+_67063051 BC018509 NM_001755 NM_022845	625	+	TSC_hg19_v1_chr16_+_67063217 AK290462 AK291834 AB463544 AF294326 BT006862 CU676254 DQ890558 DQ893719 L20298 AK311724	866	+	TSC_hg19_v1_chr16_+_67143864 AF176088 BC004556 NM_025187	81432	+	NM_001190201|CES4A|283848|carboxylesterase 4A##NM_001190202|CES4A|283848|carboxylesterase 4A##AK094783|CES4A|283848|carboxylesterase 4A##AK300792|CES4A|283848|carboxylesterase 4A##AK295483|CES4A|283848|carboxylesterase 4A##BC041823|CES4A|283848|carboxylesterase 4A##BC064573|CES4A|283848|carboxylesterase 4A##AK293061|CES4A|283848|carboxylesterase 4A##NM_173815|CES4A|283848|carboxylesterase 4A##AK296064|CES4A|283848|carboxylesterase 4A##AK025389|CES3|23491|carboxylesterase 3##NM_001185176|CES3|23491|carboxylesterase 3##BC018509|CBFB|865|core-binding factor, beta subunit##NM_001755|CBFB|865|core-binding factor, beta subunit##NM_022845|CBFB|865|core-binding factor, beta subunit##AK290462|CBFB|865|core-binding factor, beta subunit##AK291834|CBFB|865|core-binding factor, beta subunit##AF294326|CBFB|865|core-binding factor, beta subunit##BT006862|CBFB|865|core-binding factor, beta subunit##DQ890558|CBFB|865|core-binding factor, beta subunit##DQ893719|CBFB|865|core-binding factor, beta subunit##L20298|CBFB|865|core-binding factor, beta subunit##AK311724|CBFB|865|core-binding factor, beta subunit##AF176088|C16orf70|80262|chromosome 16 open reading frame 70##BC004556|C16orf70|80262|chromosome 16 open reading frame 70##NM_025187|C16orf70|80262|chromosome 16 open reading frame 70	0.0	0.0	
chr16	69293035	69293140	reg1014848.p1	3.911	+	TSC_hg19_v1_chr16_+_69221066 BC031058 AF243385 NM_006750 U40572 BC048215 EU831451 EU831538	-72059	+	TSC_hg19_v1_chr16_+_69166551 AK027634 AK027675 AK310104 AB075868 BC009348	-126534	+	TSC_hg19_v1_chr16_+_69166532 BX647265 AK074795	-126560	+	TSC_hg19_v1_chr16_+_69345258 AK315026 AF132747 AF159063 AF255952 NM_013245 BC047932 AF112215 CU690536 EU831747	52245	+	TSC_hg19_v1_chr16_-_69364492 AF322879 BC019912 AF239156 NM_022341	71405	-	TSC_hg19_v1_chr16_-_69373468 BC063831	80350	-	BC031058|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AF243385|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##NM_006750|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##U40572|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##BC048215|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831451|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##EU831538|SNTB2|6645|syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2)##AK027634|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK027675|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK310104|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AB075868|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BC009348|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##BX647265|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK074795|CIRH1A|84916|cirrhosis, autosomal recessive 1A (cirhin)##AK315026|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF132747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF159063|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF255952|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##NM_013245|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##BC047932|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF112215|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##EU831747|VPS4A|27183|vacuolar protein sorting 4 homolog A (S. cerevisiae)##AF322879|PDF|64146|peptide deformylase (mitochondrial)##BC019912|PDF|64146|peptide deformylase (mitochondrial)##AF239156|PDF|64146|peptide deformylase (mitochondrial)##NM_022341|PDF|64146|peptide deformylase (mitochondrial)##BC063831|COG8|84342|component of oligomeric golgi complex 8	2.126265	0.0	denovo_WM_7:59:0.428	denovo_WM_7:74:0.420
chr16	73592460	73592623	reg1011913.p2	3.911	+	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	-499955	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	-510320	-	TSC_hg19_v1_chr16_-_72991733 BC029653	-600836	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	738152	+	TSC_hg19_v1_chr16_+_74330732 D50063 AB528643 CU680372	738230	+	TSC_hg19_v1_chr16_-_74401811 AK124154	809271	-	D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##BC029653|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##D50063|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.995762	0.0	
chr5	33616506	33616609	reg1013806.p2	3.911	+	TSC_hg19_v1_chr5_+_33441070 AK095852 AK293620 AK311361 AK315713 AK296783 M63180 BC010578 AK308342 BC000517 BC088355 AK222804 AB384811 CU674250 EU831444 DQ891416 DQ894590	-175418	+	AK292346 TSC_hg19_v1_chr5_+_33440874 NM_152295	-175701	+	BC131540 X52282 TSC_hg19_v1_chr5_+_32711843 AF025998	-904752	+	BC139900 BC131733 AY358745 TSC_hg19_v1_chr5_-_33892090 BC058841 NM_030955	275488	-	TSC_hg19_v1_chr5_-_33892294 AJ250725	275738	-	D88437 NM_016568	319933	+	AK095852|TARS|6897|threonyl-tRNA synthetase##AK293620|TARS|6897|threonyl-tRNA synthetase##AK311361|TARS|6897|threonyl-tRNA synthetase##AK315713|TARS|6897|threonyl-tRNA synthetase##AK296783|TARS|6897|threonyl-tRNA synthetase##M63180|TARS|6897|threonyl-tRNA synthetase##BC010578|TARS|6897|threonyl-tRNA synthetase##AK308342|TARS|6897|threonyl-tRNA synthetase##BC000517|TARS|6897|threonyl-tRNA synthetase##BC088355|TARS|6897|threonyl-tRNA synthetase##AK222804|TARS|6897|threonyl-tRNA synthetase##EU831444|TARS|6897|threonyl-tRNA synthetase##DQ891416|TARS|6897|threonyl-tRNA synthetase##DQ894590|TARS|6897|threonyl-tRNA synthetase##AK292346|TARS|6897|threonyl-tRNA synthetase##NM_152295|TARS|6897|threonyl-tRNA synthetase##BC131540|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##X52282|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AF025998|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##BC139900|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC131733|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AY358745|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##BC058841|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##NM_030955|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##AJ250725|ADAMTS12|81792|ADAM metallopeptidase with thrombospondin type 1 motif, 12##D88437|RXFP3|51289|relaxin/insulin-like family peptide receptor 3##NM_016568|RXFP3|51289|relaxin/insulin-like family peptide receptor 3	0.0	0.0	
chr7	28724307	28724468	reg1011891.p1	3.911	+	AK292916 TSC_hg19_v1_chr7_+_28530784	-193622	+	L05911 NM_004904	-249154	+	L05515 NM_182898	-272244	+	L05912 AK300455 BC059400 NM_001011666 AK316187 AK298121 AB209262	1296	+	CU690330 TSC_hg19_v1_chr7_-_28997732	273310	-	AB014544 TSC_hg19_v1_chr7_-_28997924 BC036337	273542	-	AK292916|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05912|CREB5|9586|cAMP responsive element binding protein 5##AK300455|CREB5|9586|cAMP responsive element binding protein 5##BC059400|CREB5|9586|cAMP responsive element binding protein 5##NM_001011666|CREB5|9586|cAMP responsive element binding protein 5##AK316187|CREB5|9586|cAMP responsive element binding protein 5##AB209262|CREB5|9586|cAMP responsive element binding protein 5##AB014544|TRIL|9865|TLR4 interactor with leucine-rich repeats##BC036337|TRIL|9865|TLR4 interactor with leucine-rich repeats	0.786258	0.0	denovo_WM_7:-25:0.744
chr7	44627840	44627927	reg1013618.p2	3.911	+	TSC_hg19_v1_chr7_-_44621839 AK290125	-6045	-	TSC_hg19_v1_chr7_-_44621821 AK294122 BC052641 BC053583 NM_182547 AK074557 BC057851	-6056	-	TSC_hg19_v1_chr7_-_44621814 AY191223 AB590072 BC025705 AM393201 AM393715 BX647965 BC035467	-6083	-	NM_001003941 NM_001165036 NM_002541 TSC_hg19_v1_chr7_+_44646167	18260	+	TSC_hg19_v1_chr7_+_44646177 AK296400	18290	+	TSC_hg19_v1_chr7_+_44646188 BC009580	18301	+	AK290125|TMED4|222068|transmembrane emp24 protein transport domain containing 4##AK294122|TMED4|222068|transmembrane emp24 protein transport domain containing 4##BC052641|TMED4|222068|transmembrane emp24 protein transport domain containing 4##BC053583|TMED4|222068|transmembrane emp24 protein transport domain containing 4##NM_182547|TMED4|222068|transmembrane emp24 protein transport domain containing 4##AK074557|TMED4|222068|transmembrane emp24 protein transport domain containing 4##BC057851|TMED4|222068|transmembrane emp24 protein transport domain containing 4##AY191223|TMED4|222068|transmembrane emp24 protein transport domain containing 4##BC025705|TMED4|222068|transmembrane emp24 protein transport domain containing 4##AM393201|TMED4|222068|transmembrane emp24 protein transport domain containing 4##AM393715|TMED4|222068|transmembrane emp24 protein transport domain containing 4##BX647965|TMED4|222068|transmembrane emp24 protein transport domain containing 4##BC035467|TMED4|222068|transmembrane emp24 protein transport domain containing 4##NM_001003941|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##NM_001165036|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##NM_002541|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK296400|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC009580|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	0.0	0.067884	
chr1	40781082	40781183	reg1013991.p1	3.910	+	TSC_hg19_v1_chr1_+_40735749 AK027874	-45369	+	TSC_hg19_v1_chr1_+_40723926 EU176257 EU176564	-57195	+	TSC_hg19_v1_chr1_+_40723907 Y13834	-57224	+	M95610 AB590601 TSC_hg19_v1_chr1_-_40782905	1733	-	TSC_hg19_v1_chr1_-_40782958 BC136326 BC136327 NM_001852	1811	-	TSC_hg19_v1_chr1_-_40782992 BC041479	1888	-	AK027874|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##EU176257|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##EU176564|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##Y13834|ZMPSTE24|10269|zinc metallopeptidase (STE24 homolog, S. cerevisiae)##M95610|COL9A2|1298|collagen, type IX, alpha 2##BC136326|COL9A2|1298|collagen, type IX, alpha 2##BC136327|COL9A2|1298|collagen, type IX, alpha 2##NM_001852|COL9A2|1298|collagen, type IX, alpha 2##BC041479|COL9A2|1298|collagen, type IX, alpha 2	0.0	0.028622	
chr15	40882331	40882414	reg1001433.p2	3.910	+	TSC_hg19_v1_chr15_+_40861536 AK055971 AK301706 NM_152260 CU677781	-20788	+	TSC_hg19_v1_chr15_+_40861527 AK293145 BC016967	-20844	+	BC007697 TSC_hg19_v1_chr15_+_40861516	-20855	+	AF173994 TSC_hg19_v1_chr15_+_40886230 BC043597	3853	+	TSC_hg19_v1_chr15_+_40886474 AB022190 BC014306 NM_144508 NM_170589 AK307605 AK307996 AF248041 AF461041 BC029373	4092	+	TSC_hg19_v1_chr15_-_40987295 AK125393	104923	-	AK055971|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK301706|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##NM_152260|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AK293145|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##BC016967|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##BC007697|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2##AF173994|CASC5|57082|cancer susceptibility candidate 5##BC043597|CASC5|57082|cancer susceptibility candidate 5##AB022190|CASC5|57082|cancer susceptibility candidate 5##BC014306|CASC5|57082|cancer susceptibility candidate 5##NM_144508|CASC5|57082|cancer susceptibility candidate 5##NM_170589|CASC5|57082|cancer susceptibility candidate 5##AK307605|CASC5|57082|cancer susceptibility candidate 5##AK307996|CASC5|57082|cancer susceptibility candidate 5##AF248041|CASC5|57082|cancer susceptibility candidate 5##AF461041|CASC5|57082|cancer susceptibility candidate 5##BC029373|CASC5|57082|cancer susceptibility candidate 5##AK125393|LOC100505648|100505648|uncharacterized LOC100505648	1.740661	0.0	denovo_WM_7:51:0.274	denovo_WM_7:55:0.275	denovo_WM_7:91:0.829
chr16	31356170	31356262	reg1012700.p2	3.910	+	TSC_hg19_v1_chr16_+_31271330 AK127637 AB384734	-84862	+	TSC_hg19_v1_chr16_+_31271311 J03925 BC096346 BC096347 BC096348 BC099660	-84899	+	TSC_hg19_v1_chr16_+_31271295 AK057856 NM_000632 NM_001145808 M18044	-84923	+	TSC_hg19_v1_chr16_+_31366508 AK296666 AK309642 NM_000887	10276	+	TSC_hg19_v1_chr16_+_31366521 M81695	10306	+	TSC_hg19_v1_chr16_+_31366549 BC037577 BC038237 DQ892486 DQ895697	10335	+	AK127637|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##J03925|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096346|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096347|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC096348|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##BC099660|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##AK057856|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##NM_000632|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##NM_001145808|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##M18044|ITGAM|3684|integrin, alpha M (complement component 3 receptor 3 subunit)##AK296666|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##AK309642|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##NM_000887|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##M81695|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##BC037577|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##BC038237|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##DQ892486|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)##DQ895697|ITGAX|3687|integrin, alpha X (complement component 3 receptor 4 subunit)	0.0	0.0	
chr18	32622787	32622965	reg1010813.p2	3.910	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	-1420	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-64576	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-65917	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	198170	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	247296	-	TSC_hg19_v1_chr18_+_32870279 AK023456 AF159567 AK094216	247428	+	NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK023456|ZNF271|10778|zinc finger protein 271##AF159567|ZNF271|10778|zinc finger protein 271##AK094216|ZNF271|10778|zinc finger protein 271	0.957389	0.0	denovo_WM_7:18:0.740
chr19	8383829	8383995	reg1013147.p2	3.910	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	-10703	-	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-109664	+	AB384635 AB053450 BC153882 NM_032447	-171537	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	2345	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	2374	-	TSC_hg19_v1_chr19_+_8386383 AB055779 AK293636 AK301638 AK311925 BC070217 NM_001031 BC070218 BC000354 BC018810 L05091 U58682 BC021239 DQ891357 DQ894538 CR457055	2482	+	CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AK293636|RPS28|6234|ribosomal protein S28##AK301638|RPS28|6234|ribosomal protein S28##AK311925|RPS28|6234|ribosomal protein S28##BC070217|RPS28|6234|ribosomal protein S28##NM_001031|RPS28|6234|ribosomal protein S28##BC070218|RPS28|6234|ribosomal protein S28##BC000354|RPS28|6234|ribosomal protein S28##BC018810|RPS28|6234|ribosomal protein S28##L05091|RPS28|6234|ribosomal protein S28##U58682|RPS28|6234|ribosomal protein S28##BC021239|RPS28|6234|ribosomal protein S28##DQ891357|RPS28|6234|ribosomal protein S28##DQ894538|RPS28|6234|ribosomal protein S28##CR457055|RPS28|6234|ribosomal protein S28	0.999557	0.135535	denovo_WM_7:-44:0.212	denovo_WM_7:-47:0.425
chr2	47205180	47205266	reg1013554.p2	3.910	+	TSC_hg19_v1_chr2_-_47168913 NM_001171508 NM_001171511	-36276	-	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	-36350	-	TSC_hg19_v1_chr2_+_47168400 BC047709 BC111487	-36820	+	AK097491 NM_001163561 NM_173649	177247	-	TSC_hg19_v1_chr2_-_47403624 M19311 BC003354 BC006464	198403	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	198427	-	NM_001171508|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171511|MCFD2|90411|multiple coagulation factor deficiency 2##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2##BC111487|TTC7A|57217|tetratricopeptide repeat domain 7A##AK097491|C2orf61|285051|chromosome 2 open reading frame 61##NM_001163561|C2orf61|285051|chromosome 2 open reading frame 61##NM_173649|C2orf61|285051|chromosome 2 open reading frame 61##M19311|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC003354|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC006464|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)	0.0	0.0	
chr5	116038649	116038795	reg1009472.p1	3.910	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-128208	-	TSC_hg19_v1_chr5_+_115898220 D28352	-140498	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-618001	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2285516	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2368089	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2368443	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr6	54604559	54604665	reg1012693.p2	3.910	+	BC070278 NM_014464 AK312918 BC056235 AB022277 AF195116 AF195117 CU687080 CU691132 EU832329 EU832414	-431337	+	NM_138569 BX647567 AK055530	-720862	+	TSC_hg19_v1_chr6_+_53659802 AF332199 AK292248 AB527517 AF359380 CU678434 EU176638 AK001637	-944681	+	AK055204 NM_001010872 BC101628 BC112275	106976	+	NM_001526 AK314279	434482	+	AY358198 NM_207410	587654	+	BC070278|TINAG|27283|tubulointerstitial nephritis antigen##NM_014464|TINAG|27283|tubulointerstitial nephritis antigen##AK312918|TINAG|27283|tubulointerstitial nephritis antigen##BC056235|TINAG|27283|tubulointerstitial nephritis antigen##AB022277|TINAG|27283|tubulointerstitial nephritis antigen##AF195116|TINAG|27283|tubulointerstitial nephritis antigen##AF195117|TINAG|27283|tubulointerstitial nephritis antigen##EU832329|TINAG|27283|tubulointerstitial nephritis antigen##EU832414|TINAG|27283|tubulointerstitial nephritis antigen##NM_138569|MLIP|90523|muscular LMNA-interacting protein##BX647567|MLIP|90523|muscular LMNA-interacting protein##AK055530|MLIP|90523|muscular LMNA-interacting protein##AF332199|LRRC1|55227|leucine rich repeat containing 1##AK292248|LRRC1|55227|leucine rich repeat containing 1##AF359380|LRRC1|55227|leucine rich repeat containing 1##EU176638|LRRC1|55227|leucine rich repeat containing 1##AK001637|LRRC1|55227|leucine rich repeat containing 1##AK055204|FAM83B|222584|family with sequence similarity 83, member B##NM_001010872|FAM83B|222584|family with sequence similarity 83, member B##BC101628|FAM83B|222584|family with sequence similarity 83, member B##BC112275|FAM83B|222584|family with sequence similarity 83, member B##NM_001526|HCRTR2|3062|hypocretin (orexin) receptor 2##AK314279|HCRTR2|3062|hypocretin (orexin) receptor 2##AY358198|GFRAL|389400|GDNF family receptor alpha like##NM_207410|GFRAL|389400|GDNF family receptor alpha like	0.985606	0.0	denovo_WM_7:-64:0.455	denovo_WM_7:-65:0.455
chr6_mcf_hap5	2553396	2553513	reg1008908.p1	3.910	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chrX	103588270	103588351	reg1010744.p1	3.910	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-88724	-	TSC_hg19_v1_chrX_+_103411251 BC017665	-177043	+	TSC_hg19_v1_chrX_+_103411133 AK091221 AX746858 BC057847 NM_207318	-177186	+	AK290196 TSC_hg19_v1_chrX_+_103810879	222569	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	222682	+	BC108734 AF285597 BC042547 NM_031274	877043	-	BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC017665|FAM199X|139231|family with sequence similarity 199, X-linked##AK091221|FAM199X|139231|family with sequence similarity 199, X-linked##BC057847|FAM199X|139231|family with sequence similarity 199, X-linked##NM_207318|FAM199X|139231|family with sequence similarity 199, X-linked##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A	0.0	0.0	
chr12	90218709	90218812	reg1010942.p1	3.909	+	TSC_hg19_v1_chr12_+_90103566 BC031240 AK094517 BC047477	-115215	+	TSC_hg19_v1_chr12_+_90102640 BC040326	-116073	+	TSC_hg19_v1_chr12_-_90049818 J04027 M95541 NM_001001323 NM_001682 BC015346	-168909	-	BC026075 BC024183 BC027600 BC034491 NM_152638	1130191	-	U59111 TSC_hg19_v1_chr12_-_91398750	1179987	-	TSC_hg19_v1_chr12_-_91398757 AK290642 BC030958 NM_004950	1180019	-	BC031240|LOC338758|338758|uncharacterized LOC338758##AK094517|LOC338758|338758|uncharacterized LOC338758##BC047477|LOC338758|338758|uncharacterized LOC338758##BC040326|LOC338758|338758|uncharacterized LOC338758##J04027|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##M95541|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001001323|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##NM_001682|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC015346|ATP2B1|490|ATPase, Ca++ transporting, plasma membrane 1##BC026075|C12orf12|196477|chromosome 12 open reading frame 12##BC024183|C12orf12|196477|chromosome 12 open reading frame 12##BC027600|C12orf12|196477|chromosome 12 open reading frame 12##BC034491|C12orf12|196477|chromosome 12 open reading frame 12##NM_152638|C12orf12|196477|chromosome 12 open reading frame 12##U59111|EPYC|1833|epiphycan##AK290642|EPYC|1833|epiphycan##BC030958|EPYC|1833|epiphycan##NM_004950|EPYC|1833|epiphycan	0.999682	0.0	denovo_WM_7:-24:0.419	denovo_WM_7:-25:0.419
chr14	58765045	58765191	reg1011232.p2	3.909	+	TSC_hg19_v1_chr14_-_58764845 AK055868 BC034618 CR627086 BC104151 BC104152 BC112973 BC112974 AK297601	-285	-	TSC_hg19_v1_chr14_+_58711605 BC038990 D00762 DQ892645 DQ895883 AB464085 BT006711 BT019715 CR456933 CU688640	-53488	+	TSC_hg19_v1_chr14_+_58711570 AK315158 BC029402 BC005265	-53544	+	TSC_hg19_v1_chr14_+_58765261 NM_002892 NM_023000 NM_023001 AK307520 BC026230	123	+	TSC_hg19_v1_chr14_+_58765292 BC047301 S66427	200	+	AY358266 NM_207377 BC137557 BC137563 BC144709	97526	+	AK055868|FLJ31306|379025|uncharacterized LOC379025##BC034618|FLJ31306|379025|uncharacterized LOC379025##CR627086|FLJ31306|379025|uncharacterized LOC379025##BC104151|FLJ31306|379025|uncharacterized LOC379025##BC104152|FLJ31306|379025|uncharacterized LOC379025##BC112973|FLJ31306|379025|uncharacterized LOC379025##BC112974|FLJ31306|379025|uncharacterized LOC379025##BC038990|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##D00762|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ892645|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##DQ895883|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT006711|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BT019715|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##CR456933|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##AK315158|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC029402|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##BC005265|PSMA3|5684|proteasome (prosome, macropain) subunit, alpha type, 3##NM_002892|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023000|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##NM_023001|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AK307520|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##BC026230|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##S66427|ARID4A|5926|AT rich interactive domain 4A (RBP1-like)##AY358266|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##NM_207377|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC137557|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC137563|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like##BC144709|TOMM20L|387990|translocase of outer mitochondrial membrane 20 homolog (yeast)-like	0.0	0.0	
chr17	29117360	29117520	reg1005282.p1	3.909	+	TSC_hg19_v1_chr17_+_29058664 BC047718	-58752	+	BC096718 BC098126 BC098273 NM_015594	-230857	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-313007	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	34235	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	34323	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	41545	+	BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5	0.172356	0.0	
chr19	45195414	45195580	reg1002223.p2	3.909	+	BC083499 NM_001127893 NM_020219	-20774	+	TSC_hg19_v1_chr19_+_45147209 AK300349 AK094177 BC015542	-48281	+	TSC_hg19_v1_chr19_+_45147180 AK290946	-48316	+	BC144608 NM_001039213	6923	+	TSC_hg19_v1_chr19_+_45251964 NM_005178 BC064993 M31732	56484	+	AF117646 AF117647 NM_001130852 NM_012116 AB028645 BC028915 AB527766 DQ891243 DQ894493 CU688574	85659	+	BC083499|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_001127893|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##NM_020219|CEACAM19|56971|carcinoembryonic antigen-related cell adhesion molecule 19##AK300349|PVR|5817|poliovirus receptor##AK094177|PVR|5817|poliovirus receptor##BC015542|PVR|5817|poliovirus receptor##AK290946|PVR|5817|poliovirus receptor##BC144608|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_001039213|CEACAM16|388551|carcinoembryonic antigen-related cell adhesion molecule 16##NM_005178|BCL3|602|B-cell CLL/lymphoma 3##BC064993|BCL3|602|B-cell CLL/lymphoma 3##M31732|BCL3|602|B-cell CLL/lymphoma 3##AF117646|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AF117647|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_001130852|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##NM_012116|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##AB028645|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##BC028915|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ891243|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c##DQ894493|CBLC|23624|Cas-Br-M (murine) ecotropic retroviral transforming sequence c	0.0	0.0	
chr20	17937363	17937441	reg1016859.p2	3.909	+	BC054871 NM_001014977 NM_178477 BC062735	-256804	+	NM_001159495	-263083	+	TSC_hg19_v1_chr20_-_17662888 AB037819 BC009700 NM_001042576 NM_004587	-274519	-	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	11812	-	TSC_hg19_v1_chr20_-_17949438 BC002724 BC062638 BC064555 BC073171 AK123903 AK308017 AK296947 BC000100 AF121855 NM_152227	12038	-	TSC_hg19_v1_chr20_+_17949742 AF306686 AK315532 AF306684 AF306685 AK027503 BC016869 NM_052865	12260	+	BC054871|BANF2|140836|barrier to autointegration factor 2##NM_001014977|BANF2|140836|barrier to autointegration factor 2##NM_178477|BANF2|140836|barrier to autointegration factor 2##BC062735|BANF2|140836|barrier to autointegration factor 2##NM_001159495|BANF2|140836|barrier to autointegration factor 2##AB037819|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC009700|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001042576|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_004587|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5##BC002724|SNX5|27131|sorting nexin 5##BC062638|SNX5|27131|sorting nexin 5##AK123903|SNX5|27131|sorting nexin 5##AK308017|SNX5|27131|sorting nexin 5##AK296947|SNX5|27131|sorting nexin 5##BC000100|SNX5|27131|sorting nexin 5##AF121855|SNX5|27131|sorting nexin 5##NM_152227|SNX5|27131|sorting nexin 5##AF306686|C20orf72|92667|chromosome 20 open reading frame 72##AK315532|C20orf72|92667|chromosome 20 open reading frame 72##AF306684|C20orf72|92667|chromosome 20 open reading frame 72##AF306685|C20orf72|92667|chromosome 20 open reading frame 72##AK027503|C20orf72|92667|chromosome 20 open reading frame 72##BC016869|C20orf72|92667|chromosome 20 open reading frame 72##NM_052865|C20orf72|92667|chromosome 20 open reading frame 72	1.956464	0.0	denovo_WM_7:-60:0.589	denovo_WM_7:-61:0.295	denovo_WM_7:-75:0.315	denovo_WM_7:-76:0.609
chr8	53638722	53638837	reg1013184.p1	3.909	+	AB059622 TSC_hg19_v1_chr8_-_53626996 NM_001083617 NM_014781	-11766	-	AK291699 D86958 TSC_hg19_v1_chr8_-_53626990	-11793	-	BC130641 BC130643 BC144534 AY358213 NM_207413	-160786	-	BC069117 BC107101 NM_005285	213688	+	BC099912 AK310407 AY168006 NM_000912 AY466378	525433	-	AK098305 NM_213620 BC014862 AF125105 TSC_hg19_v1_chr8_-_54755806 BC007421 BC007454 BC025275 AF112204 AF132945 AK308204	1116900	-	AB059622|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_001083617|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_014781|RB1CC1|9821|RB1-inducible coiled-coil 1##AK291699|RB1CC1|9821|RB1-inducible coiled-coil 1##D86958|RB1CC1|9821|RB1-inducible coiled-coil 1##BC130641|FAM150A|389658|family with sequence similarity 150, member A##BC130643|FAM150A|389658|family with sequence similarity 150, member A##BC144534|FAM150A|389658|family with sequence similarity 150, member A##AY358213|FAM150A|389658|family with sequence similarity 150, member A##NM_207413|FAM150A|389658|family with sequence similarity 150, member A##BC069117|NPBWR1|2831|neuropeptides B/W receptor 1##BC107101|NPBWR1|2831|neuropeptides B/W receptor 1##NM_005285|NPBWR1|2831|neuropeptides B/W receptor 1##BC099912|OPRK1|4986|opioid receptor, kappa 1##AK310407|OPRK1|4986|opioid receptor, kappa 1##AY168006|OPRK1|4986|opioid receptor, kappa 1##NM_000912|OPRK1|4986|opioid receptor, kappa 1##AY466378|OPRK1|4986|opioid receptor, kappa 1##AK098305|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213620|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC014862|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF125105|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007421|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007454|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC025275|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF112204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF132945|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK308204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	1.996389	0.0	denovo_WM_7:-47:0.469	denovo_WM_7:-48:0.321	denovo_WM_7:-63:0.299	denovo_WM_7:-64:0.447
chr8	8147131	8147236	reg1016447.p1	3.909	+	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-61041	+	AK292586 NM_001193630	-363325	+	BC069285 NM_004942 BC093985 BC093983 Z71389	-394979	+	TSC_hg19_v1_chr8_-_8175862 AF075060	28705	-	AK122582 NM_001080826	92039	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	412515	+	BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##BC069285|DEFB4A|1673|defensin, beta 4A##NM_004942|DEFB4A|1673|defensin, beta 4A##BC093985|DEFB4A|1673|defensin, beta 4A##BC093983|DEFB4A|1673|defensin, beta 4A##Z71389|DEFB4A|1673|defensin, beta 4A##AF075060|SGK223|157285|homolog of rat pragma of Rnd2##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23	0.0	0.0	
chr9	69652465	69652605	reg1006444.p2	3.909	+	AL136793 NM_001098805	-270555	+	AF265442 BC069006 AK293173 NM_001085457	-389981	-	NM_001085476	-450332	-	NM_001126334	526279	-	NM_001099279 NM_199244	777195	-	CU688346 TSC_hg19_v1_chr9_-_70490092	837546	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001098805|ANKRD20A4|728747|ankyrin repeat domain 20 family, member A4##AF265442|CBWD5|220869|COBW domain containing 5##BC069006|CBWD6|644019|COBW domain containing 6##AK293173|CBWD6|644019|COBW domain containing 6##NM_001085457|CBWD6|644019|COBW domain containing 6##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6##NM_001126334|FOXD4L5|653427|forkhead box D4-like 5##NM_001099279|FOXD4L2|100036519|forkhead box D4-like 2##NM_199244|FOXD4L4|349334|forkhead box D4-like 4	0.997199	0.0	denovo_WM_7:-29:0.976
chr11	47685007	47685094	reg1013921.p1	3.908	+	CU674434 DQ891810 DQ894993 AK223097 TSC_hg19_v1_chr11_-_47664100 BC000875 AY380792 AF085361 AF176008 AK295218 AK313032 NM_014342	-20937	-	AF329838 TSC_hg19_v1_chr11_-_47615958 NM_031909	-69119	-	NM_001164379 BC065704	-76814	+	AK056687 BC036234 AK303066 AK303875 NM_024783	51861	-	TSC_hg19_v1_chr11_-_47788834 AK123898 AL137480	103783	-	CU691490 TSC_hg19_v1_chr11_-_47788838	103787	-	DQ891810|MTCH2|23788|mitochondrial carrier 2##DQ894993|MTCH2|23788|mitochondrial carrier 2##AK223097|MTCH2|23788|mitochondrial carrier 2##BC000875|MTCH2|23788|mitochondrial carrier 2##AY380792|MTCH2|23788|mitochondrial carrier 2##AF085361|MTCH2|23788|mitochondrial carrier 2##AF176008|MTCH2|23788|mitochondrial carrier 2##AK295218|MTCH2|23788|mitochondrial carrier 2##AK313032|MTCH2|23788|mitochondrial carrier 2##NM_014342|MTCH2|23788|mitochondrial carrier 2##AF329838|C1QTNF4|114900|C1q and tumor necrosis factor related protein 4##NM_031909|C1QTNF4|114900|C1q and tumor necrosis factor related protein 4##NM_001164379|FAM180B|399888|family with sequence similarity 180, member B##BC065704|FAM180B|399888|family with sequence similarity 180, member B##AK056687|AGBL2|79841|ATP/GTP binding protein-like 2##BC036234|AGBL2|79841|ATP/GTP binding protein-like 2##AK303066|AGBL2|79841|ATP/GTP binding protein-like 2##AK303875|AGBL2|79841|ATP/GTP binding protein-like 2##NM_024783|AGBL2|79841|ATP/GTP binding protein-like 2##AK123898|FNBP4|23360|formin binding protein 4##AL137480|FNBP4|23360|formin binding protein 4	0.998909	0.0	denovo_WM_7:66:0.418	denovo_WM_7:67:0.418
chr13	47149305	47149485	reg1015585.p2	3.908	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-21888	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-21975	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-22072	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	221920	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	321672	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1426056	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.21575	0.0	
chr16	89085505	89085574	reg1011018.p1	3.908	+	AB527670 EU446890 BC047019 AK314766 AB010419 BC062624 NM_005187 TSC_hg19_v1_chr16_-_89043569	-42136	-	AB010420 NM_175931	-77933	-	AB528852 EU190484 BC130001 BC130002 NM_001080487	-152498	-	TSC_hg19_v1_chr16_-_89119364 AK055272	33830	-	NM_001127214 NM_001243279 NM_174917 TSC_hg19_v1_chr16_+_89160259	74698	+	TSC_hg19_v1_chr16_+_89160285 BC028399 AK290963 BC064609 BC072391 AK075499	74768	+	EU446890|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##BC047019|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AK314766|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AB010419|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##BC062624|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_005187|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##AB010420|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##NM_175931|CBFA2T3|863|core-binding factor, runt domain, alpha subunit 2; translocated to, 3##EU190484|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##BC130001|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##BC130002|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##NM_001080487|PABPN1L|390748|poly(A) binding protein, nuclear 1-like (cytoplasmic)##NM_001127214|ACSF3|197322|acyl-CoA synthetase family member 3##NM_001243279|ACSF3|197322|acyl-CoA synthetase family member 3##NM_174917|ACSF3|197322|acyl-CoA synthetase family member 3##BC028399|ACSF3|197322|acyl-CoA synthetase family member 3##AK290963|ACSF3|197322|acyl-CoA synthetase family member 3##BC064609|ACSF3|197322|acyl-CoA synthetase family member 3##BC072391|ACSF3|197322|acyl-CoA synthetase family member 3##AK075499|ACSF3|197322|acyl-CoA synthetase family member 3	0.99858	0.0	denovo_WM_7:25:0.494	denovo_WM_7:26:0.494
chr21	26588487	26588667	reg1018235.p1	3.908	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-787509	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4217804	+	TSC_hg19_v1_chr21_+_22370694 AK299054	-4217887	+	TSC_hg19_v1_chr21_+_26934442 AF402776	345895	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	391238	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	423076	+	AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##AK299054|NCAM2|4685|neural cell adhesion molecule 2##AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2	0.952386	0.0	denovo_WM_7:91:0.881
chr2	231615863	231616000	reg1015369.p1	3.908	+	AK292382 NM_001130849 NM_001130850 AK315692	-37653	+	TSC_hg19_v1_chr2_+_231577633 BC020570	-38287	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	-38385	+	TSC_hg19_v1_chr2_+_231729608 NM_001012514 NM_001012516 NM_030926	113629	+	TSC_hg19_v1_chr2_+_231729626 AF271781 AF272043	113698	+	TSC_hg19_v1_chr2_+_231729653 AK075361 AK090975 AK303199 AX746713	113714	+	AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##NM_016289|CAB39|51719|calcium binding protein 39##NM_001012514|ITM2C|81618|integral membrane protein 2C##NM_001012516|ITM2C|81618|integral membrane protein 2C##NM_030926|ITM2C|81618|integral membrane protein 2C##AF271781|ITM2C|81618|integral membrane protein 2C##AF272043|ITM2C|81618|integral membrane protein 2C##AK075361|ITM2C|81618|integral membrane protein 2C##AK090975|ITM2C|81618|integral membrane protein 2C##AK303199|ITM2C|81618|integral membrane protein 2C	0.030127	0.0	
chr2	29007467	29007561	reg1018148.p1	3.908	+	TSC_hg19_v1_chr2_+_28974924 BC002697 BC012045 AB464241 AM392772 BT019744 CR542263 CR542285	-32605	+	TSC_hg19_v1_chr2_+_28974719 AK303682 AK295957 AK316532 NM_206876 NM_002709 BX647970 AK312329 BX647295 X80910	-32840	+	TSC_hg19_v1_chr2_+_28824770 BC042674	-182731	+	BC093005 NM_001142634 NM_182756 BC047224	26193	+	NM_001008779 AB590634 AY820303 AY820304	31357	+	AK225551 CU674472 CU679681 TSC_hg19_v1_chr2_-_29093160 AK308821 BC010365 AL136689 BC000952 AK000635 AK225524 NM_017910	85645	-	BC002697|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##BC012045|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##AM392772|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##BT019744|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##CR542263|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##CR542285|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##AK303682|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##AK295957|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##AK316532|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##NM_206876|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##NM_002709|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##BX647970|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##AK312329|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##BX647295|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##X80910|PPP1CB|5500|protein phosphatase 1, catalytic subunit, beta isozyme##BC042674|PLB1|151056|phospholipase B1##BC093005|SPDYA|245711|speedy homolog A (Xenopus laevis)##NM_001142634|SPDYA|245711|speedy homolog A (Xenopus laevis)##NM_182756|SPDYA|245711|speedy homolog A (Xenopus laevis)##BC047224|SPDYA|245711|speedy homolog A (Xenopus laevis)##NM_001008779|SPDYA|245711|speedy homolog A (Xenopus laevis)##AY820303|SPDYA|245711|speedy homolog A (Xenopus laevis)##AY820304|SPDYA|245711|speedy homolog A (Xenopus laevis)##AK225551|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##BC010365|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##AL136689|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##BC000952|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##AK225524|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)##NM_017910|TRMT61B|55006|tRNA methyltransferase 61 homolog B (S. cerevisiae)	0.0	0.0	
chr2	9232593	9232678	reg1014125.p1	3.908	+	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	-88814	-	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	-254916	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	-410432	+	TSC_hg19_v1_chr2_+_9346906 AB007860 NM_001135191 NM_003887	114257	+	TSC_hg19_v1_chr2_+_9346940 BC063308	114324	+	TSC_hg19_v1_chr2_-_9563308 AK093179	330707	-	AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AB007860|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##NM_001135191|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##NM_003887|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##BC063308|ASAP2|8853|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2##AK093179|ITGB1BP1|9270|integrin beta 1 binding protein 1	0.0	0.0	
chr3	61546426	61546533	reg1006403.p1	3.908	+	TSC_hg19_v1_chr3_-_61237083 BC057223 BC032336 U46922 AK289824 NM_001166243 NM_002012	-309389	-	BC050317 TSC_hg19_v1_chr3_-_59035759	-2510719	-	BC075863 TSC_hg19_v1_chr3_-_59035746	-2510738	-	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	732	+	BC047734 TSC_hg19_v1_chr3_+_61547294	807	+	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	1497	+	BC057223|FHIT|2272|fragile histidine triad gene##BC032336|FHIT|2272|fragile histidine triad gene##U46922|FHIT|2272|fragile histidine triad gene##AK289824|FHIT|2272|fragile histidine triad gene##NM_001166243|FHIT|2272|fragile histidine triad gene##NM_002012|FHIT|2272|fragile histidine triad gene##BC050317|C3orf67|200844|chromosome 3 open reading frame 67##BC075863|C3orf67|200844|chromosome 3 open reading frame 67##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G	0.0	0.0	
chr6	10531939	10532071	reg1012039.p1	3.908	+	AK307373 NM_145649 AK291767 AK310216 AL832714	-10397	+	AK296737 NM_001042425	-112214	-	BC071713 NM_003220 TSC_hg19_v1_chr6_-_10415496	-116537	-	NM_001491	23943	+	AK313426 BX647668 NM_145655 BX647576 AL832719 BC130524	54009	+	BC016820 NM_001145020	162832	-	AK307373|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145649|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK291767|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK310216|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832714|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK296737|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001042425|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##BC071713|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_003220|TFAP2A|7020|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)##NM_001491|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AK313426|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647668|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##NM_145655|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BX647576|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##AL832719|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC130524|GCNT2|2651|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)##BC016820|C6orf52|347744|chromosome 6 open reading frame 52##NM_001145020|C6orf52|347744|chromosome 6 open reading frame 52	0.0	0.0	
chr7	124425346	124425443	reg1007697.p1	3.908	+	BC040007 NM_005302 TSC_hg19_v1_chr7_-_124405847	-19598	-	AF502281 CU691802 AB464545 AF017262 TSC_hg19_v1_chr7_-_124405121	-20319	-	TSC_hg19_v1_chr7_-_123673486 NM_001136002	-751890	-	BC130600 BC130604 NM_001024603	5408	-	NM_001042594 NM_015450	144642	-	NM_000845	2458174	-	BC040007|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_005302|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##AF502281|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##AF017262|GPR37|2861|G protein-coupled receptor 37 (endothelin receptor type B-like)##NM_001136002|TMEM229A|730130|transmembrane protein 229A##BC130600|LOC154872|154872|uncharacterized LOC154872##BC130604|LOC154872|154872|uncharacterized LOC154872##NM_001024603|LOC154872|154872|uncharacterized LOC154872##NM_001042594|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_015450|POT1|25913|protection of telomeres 1 homolog (S. pombe)##NM_000845|GRM8|2918|glutamate receptor, metabotropic 8	0.0	0.0	
chr11	118762629	118762784	reg1014492.p1	3.907	+	AK291512 NM_001716 BC110352 X68149 AB464488	-8146	+	TSC_hg19_v1_chr11_-_118661898 NM_004397	-100772	-	TSC_hg19_v1_chr11_-_118661865 Z11685	-100827	-	NM_032966 X68829	1394	+	AB094091 NM_182557	18906	-	NM_006760 Y13645 BC113900 AY455312 AB009454	64357	+	AK291512|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_001716|CXCR5|643|chemokine (C-X-C motif) receptor 5##BC110352|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68149|CXCR5|643|chemokine (C-X-C motif) receptor 5##NM_004397|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##Z11685|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##NM_032966|CXCR5|643|chemokine (C-X-C motif) receptor 5##X68829|CXCR5|643|chemokine (C-X-C motif) receptor 5##AB094091|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_182557|BCL9L|283149|B-cell CLL/lymphoma 9-like##NM_006760|UPK2|7379|uroplakin 2##Y13645|UPK2|7379|uroplakin 2##BC113900|UPK2|7379|uroplakin 2##AY455312|UPK2|7379|uroplakin 2##AB009454|UPK2|7379|uroplakin 2	0.0	0.0	
chr16	56650029	56650095	reg1019108.p1	3.907	+	NM_005953 TSC_hg19_v1_chr16_+_56642498 BC007034 BC062435 D28442 BC070289 V00594 AY077636 M26637 AB463881 BT007315 S52379 X97260	-7540	+	NM_005954	-26796	+	BC113442 BC113444 NM_032935	-51102	+	NM_175617 TSC_hg19_v1_chr16_+_56659593	9526	+	BC131609 BC062734 TSC_hg19_v1_chr16_+_56659697 AF495759 AF348996 S68949	9659	+	NM_176870 AF136177 TSC_hg19_v1_chr16_+_56666570 BC028280 BC103841	16498	+	NM_005953|MT2A|4502|metallothionein 2A##BC007034|MT2A|4502|metallothionein 2A##D28442|MT2A|4502|metallothionein 2A##BC070289|MT2A|4502|metallothionein 2A##V00594|MT2A|4502|metallothionein 2A##M26637|MT2A|4502|metallothionein 2A##BT007315|MT2A|4502|metallothionein 2A##S52379|MT2A|4502|metallothionein 2A##X97260|MT2A|4502|metallothionein 2A##NM_005954|MT3|4504|metallothionein 3##BC113442|MT4|84560|metallothionein 4##BC113444|MT4|84560|metallothionein 4##NM_032935|MT4|84560|metallothionein 4##NM_175617|MT1E|4493|metallothionein 1E##BC131609|MT1E|4493|metallothionein 1E##BC062734|MT1E|4493|metallothionein 1E##AF495759|MT1E|4493|metallothionein 1E##S68949|MT1E|4493|metallothionein 1E##NM_176870|MT1M|4499|metallothionein 1M##AF136177|MT1M|4499|metallothionein 1M##BC028280|MT1M|4499|metallothionein 1M##BC103841|MT1M|4499|metallothionein 1M	1.995032	0.0	denovo_WM_7:64:0.318	denovo_WM_7:65:0.257	denovo_WM_7:82:0.244	denovo_WM_7:83:0.305
chr6	32098401	32098581	reg1015350.p2	3.907	+	BC004168 AK291418 AK027119 BC011966 NM_022110	-433	-	TSC_hg19_v1_chr6_-_32096014 BC008394 NM_001136153 NM_004381 X98054 U31903	-2480	-	TSC_hg19_v1_chr6_-_32095992 AB527673 BT007042 CU678947 U52696 BC077075	-2508	-	BC063046 TSC_hg19_v1_chr6_-_32119683 AK123424	21192	-	TSC_hg19_v1_chr6_-_32119721 AK054885 NM_030651	21229	-	NM_138717 AL110128 TSC_hg19_v1_chr6_+_32121302	22775	+	BC004168|FKBPL|63943|FK506 binding protein like##AK291418|FKBPL|63943|FK506 binding protein like##AK027119|FKBPL|63943|FK506 binding protein like##BC011966|FKBPL|63943|FK506 binding protein like##NM_022110|FKBPL|63943|FK506 binding protein like##BC008394|ATF6B|1388|activating transcription factor 6 beta##NM_001136153|ATF6B|1388|activating transcription factor 6 beta##NM_004381|ATF6B|1388|activating transcription factor 6 beta##X98054|ATF6B|1388|activating transcription factor 6 beta##U31903|ATF6B|1388|activating transcription factor 6 beta##BT007042|ATF6B|1388|activating transcription factor 6 beta##U52696|ATF6B|1388|activating transcription factor 6 beta##BC077075|ATF6B|1388|activating transcription factor 6 beta##BC063046|PRRT1|80863|proline-rich transmembrane protein 1##AK123424|PRRT1|80863|proline-rich transmembrane protein 1##AK054885|PRRT1|80863|proline-rich transmembrane protein 1##NM_030651|PRRT1|80863|proline-rich transmembrane protein 1##NM_138717|PPT2|9374|palmitoyl-protein thioesterase 2##AL110128|PPT2|9374|palmitoyl-protein thioesterase 2	1.98851	0.0	denovo_WM_7:0:0.574	denovo_WM_7:15:0.244	denovo_WM_7:16:0.304
chr7	33784310	33784376	reg1010743.p2	3.907	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-615262	+	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	-635366	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	-682021	-	AK289963 NM_133468 AK096150 BC060868	160799	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	913576	+	DQ287932 NM_015283	1293309	-	NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)	0.78841	0.0	denovo_WM_7:-43:0.679
chr11	125383299	125383419	reg1012780.p2	3.906	+	TSC_hg19_v1_chr11_-_125366162 U60060 AK296554 BC009545 NM_005103 NM_022549	-17218	-	BC045626 TSC_hg19_v1_chr11_+_125034646 AK056506 AK298999 AK316001	-348733	+	NM_022062 TSC_hg19_v1_chr11_+_125034598 AK295857 AK316268	-348781	+	TSC_hg19_v1_chr11_+_125439294 NM_001007277 NM_004879	55936	+	TSC_hg19_v1_chr11_+_125439332 AB209820	55966	+	TSC_hg19_v1_chr11_+_125439353 AK223029 AK296620 AK301556	55996	+	U60060|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##AK296554|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC009545|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_005103|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##NM_022549|FEZ1|9638|fasciculation and elongation protein zeta 1 (zygin I)##BC045626|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK298999|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316001|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_022062|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK295857|PKNOX2|63876|PBX/knotted 1 homeobox 2##AK316268|PKNOX2|63876|PBX/knotted 1 homeobox 2##NM_001007277|EI24|9538|etoposide induced 2.4 mRNA##NM_004879|EI24|9538|etoposide induced 2.4 mRNA##AB209820|EI24|9538|etoposide induced 2.4 mRNA##AK223029|EI24|9538|etoposide induced 2.4 mRNA##AK296620|EI24|9538|etoposide induced 2.4 mRNA##AK301556|EI24|9538|etoposide induced 2.4 mRNA	0.995564	0.0	
chr1	161675402	161675485	reg1011266.p1	3.906	+	NM_001002273 NM_001002274 NM_001002275 NM_001190828 NM_004001 AF543826 M31933 X17653 AK308150 AB209585 BC062629 X52473 X62573 BC146678 M28696 M31934 BC031992 BC141826 U90941 AB590317 BC148273 CR407635 CU689254 DQ891344 DQ894525 U87560 U87561 U87562 U87563 U87564 U87565 U87566 U87567 U87568 U87569 U87570 U87571 U87572 U87573 U87574 U87575 U87576 U87577 M31935	-42451	+	NM_000570	-73691	-	NM_001244753	-74192	-	AF531423 NM_001184866 NM_001184867 NM_001184870 NM_001184871 NM_001184872 NM_001184873 NM_032738	1318	+	AY670683 AY670684 AY670685 AY670686 AY670687 NM_001002901 AY786314	17012	+	TSC_hg19_v1_chr1_+_161719575 BC006286 AF119226 NM_007240 DQ892766 DQ896011 CU675333 BT006633	44123	+	NM_001002273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002274|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001002275|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_001190828|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_004001|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AF543826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31933|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X17653|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AK308150|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##AB209585|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X52473|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##X62573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC146678|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M28696|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31934|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC031992|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##BC141826|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U90941|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##BC148273|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##CR407635|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##DQ891344|FCGR2C|9103|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)##DQ894525|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87560|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87561|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87562|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87563|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87564|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87565|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87566|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87567|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87568|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87569|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87570|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87571|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87572|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87573|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87574|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87575|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87576|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##U87577|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##M31935|FCGR2B|2213|Fc fragment of IgG, low affinity IIb, receptor (CD32)##NM_000570|FCGR3B|2215|Fc fragment of IgG, low affinity IIIb, receptor (CD16b)##NM_001244753|FCGR3B|2215|Fc fragment of IgG, low affinity IIIb, receptor (CD16b)##AF531423|FCRLA|84824|Fc receptor-like A##NM_001184866|FCRLA|84824|Fc receptor-like A##NM_001184867|FCRLA|84824|Fc receptor-like A##NM_001184870|FCRLA|84824|Fc receptor-like A##NM_001184871|FCRLA|84824|Fc receptor-like A##NM_001184872|FCRLA|84824|Fc receptor-like A##NM_001184873|FCRLA|84824|Fc receptor-like A##NM_032738|FCRLA|84824|Fc receptor-like A##AY670683|FCRLB|127943|Fc receptor-like B##AY670684|FCRLB|127943|Fc receptor-like B##AY670685|FCRLB|127943|Fc receptor-like B##AY670686|FCRLB|127943|Fc receptor-like B##AY670687|FCRLB|127943|Fc receptor-like B##NM_001002901|FCRLB|127943|Fc receptor-like B##AY786314|FCRLB|127943|Fc receptor-like B##BC006286|DUSP12|11266|dual specificity phosphatase 12##AF119226|DUSP12|11266|dual specificity phosphatase 12##NM_007240|DUSP12|11266|dual specificity phosphatase 12##DQ892766|DUSP12|11266|dual specificity phosphatase 12##DQ896011|DUSP12|11266|dual specificity phosphatase 12##BT006633|DUSP12|11266|dual specificity phosphatase 12	0.997175	0.0	denovo_WM_7:-82:0.976
chr14	25162267	25162405	reg1013389.p2	3.906	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-58918	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-83475	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-116890	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	356902	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1904652	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	4073892	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.0	0.0	
chr2	122968940	122969037	reg1012748.p1	3.906	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-455751	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-474523	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-561343	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	1813876	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	4444719	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	4444804	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.0	0.0	
chr7	105449714	105449829	reg1016436.p1	3.906	+	AK300338 NM_138495	-130163	-	TSC_hg19_v1_chr7_-_105221933 BC062748 BC105284	-227836	-	BC068483 NM_021930 AK055508 TSC_hg19_v1_chr7_+_105172647 AK308126 AF317622 HQ257980	-277125	+	TSC_hg19_v1_chr7_-_105516938 AK095475 AK097574 BC030616 NM_020725 NM_152749	67214	-	TSC_hg19_v1_chr7_+_105517250 AK125261	67493	+	NM_152750 AK126338 AK131293 AK304118 BC111696 BC111738 AK304352	153927	+	AK300338|ATXN7L1|222255|ataxin 7-like 1##NM_138495|ATXN7L1|222255|ataxin 7-like 1##BC105284|EFCAB10|100130771|EF-hand calcium binding domain 10##BC068483|RINT1|60561|RAD50 interactor 1##NM_021930|RINT1|60561|RAD50 interactor 1##AK055508|RINT1|60561|RAD50 interactor 1##AK308126|RINT1|60561|RAD50 interactor 1##AF317622|RINT1|60561|RAD50 interactor 1##HQ257980|RINT1|60561|RAD50 interactor 1##AK095475|ATXN7L1|222255|ataxin 7-like 1##AK097574|ATXN7L1|222255|ataxin 7-like 1##BC030616|ATXN7L1|222255|ataxin 7-like 1##NM_020725|ATXN7L1|222255|ataxin 7-like 1##NM_152749|ATXN7L1|222255|ataxin 7-like 1##AK125261|CDHR3|222256|cadherin-related family member 3##NM_152750|CDHR3|222256|cadherin-related family member 3##AK126338|CDHR3|222256|cadherin-related family member 3##AK131293|CDHR3|222256|cadherin-related family member 3##AK304118|CDHR3|222256|cadherin-related family member 3##BC111696|CDHR3|222256|cadherin-related family member 3##BC111738|CDHR3|222256|cadherin-related family member 3##AK304352|CDHR3|222256|cadherin-related family member 3	0.0	0.0	
chr14	60714364	60714483	reg1011672.p1	3.905	+	AK097843 NM_177952 AK313337	-1952	+	TSC_hg19_v1_chr14_-_60632103 BC007337 AF151844 AK313285 AL117420 NM_016029	-82289	-	AY359031 TSC_hg19_v1_chr14_-_60632031 BC000637	-82391	-	TSC_hg19_v1_chr14_+_60715965 NM_021003 NM_177951	1535	+	TSC_hg19_v1_chr14_+_60715993 S87759 BC026691 AF070670 BC063243 AK308225	1688	+	TSC_hg19_v1_chr14_+_60716314 AY236965	1895	+	AK097843|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##NM_177952|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AK313337|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##BC007337|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AF151844|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AK313285|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AL117420|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##NM_016029|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##AY359031|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##BC000637|DHRS7|51635|dehydrogenase/reductase (SDR family) member 7##NM_021003|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##NM_177951|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##S87759|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##BC026691|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AF070670|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##BC063243|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AK308225|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A##AY236965|PPM1A|5494|protein phosphatase, Mg2+/Mn2+ dependent, 1A	1.787983	0.0	denovo_WM_7:-54:0.422	denovo_WM_7:-55:0.281	denovo_WM_7:-69:0.430	denovo_WM_7:-70:0.246	denovo_WM_7:-71:0.218
chr19	17416522	17416654	reg1016210.p2	3.905	+	BC020173 BC039087 TSC_hg19_v1_chr19_-_17414209 BC007895 AK225140 AK315366 AK021805 AK225340 AK298251 NM_024527	-2406	-	AK303628 NM_152363	-24135	+	TSC_hg19_v1_chr19_+_17378266 AK000578 BC091491 BC000788	-38294	+	BC021801 NM_023937 TSC_hg19_v1_chr19_+_17416677 AB049652 BC000071	3	+	TSC_hg19_v1_chr19_+_17420345 NM_024050	3693	+	TSC_hg19_v1_chr19_+_17420358 AY563006 DQ090952 BC000615	3770	+	BC020173|ABHD8|79575|abhydrolase domain containing 8##BC039087|ABHD8|79575|abhydrolase domain containing 8##BC007895|ABHD8|79575|abhydrolase domain containing 8##AK225140|ABHD8|79575|abhydrolase domain containing 8##AK315366|ABHD8|79575|abhydrolase domain containing 8##AK021805|ABHD8|79575|abhydrolase domain containing 8##AK225340|ABHD8|79575|abhydrolase domain containing 8##AK298251|ABHD8|79575|abhydrolase domain containing 8##NM_024527|ABHD8|79575|abhydrolase domain containing 8##AK303628|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##NM_152363|ANKLE1|126549|ankyrin repeat and LEM domain containing 1##AK000578|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC091491|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC000788|BABAM1|29086|BRISC and BRCA1 A complex member 1##BC021801|MRPL34|64981|mitochondrial ribosomal protein L34##NM_023937|MRPL34|64981|mitochondrial ribosomal protein L34##AB049652|MRPL34|64981|mitochondrial ribosomal protein L34##BC000071|MRPL34|64981|mitochondrial ribosomal protein L34##NM_024050|DDA1|79016|DET1 and DDB1 associated 1##AY563006|DDA1|79016|DET1 and DDB1 associated 1##DQ090952|DDA1|79016|DET1 and DDB1 associated 1##BC000615|DDA1|79016|DET1 and DDB1 associated 1	0.0	0.0	
chr22	42148069	42148135	reg1013134.p1	3.905	+	BC025400 NM_152513 BC035720 BC144638	-52590	+	BC035403 NM_001142964 AK131457	-61544	+	AK124020 TSC_hg19_v1_chr22_-_42084824 BC005358 AF155235 NM_001003796	-63237	-	TSC_hg19_v1_chr22_+_42196682 NM_024821 AK026002 AK299311 BC017693 CR456484	48570	+	NM_004599 TSC_hg19_v1_chr22_+_42229105	81003	+	TSC_hg19_v1_chr22_+_42229114 BC051799	81010	+	BC025400|MEI1|150365|meiosis inhibitor 1##NM_152513|MEI1|150365|meiosis inhibitor 1##BC035720|MEI1|150365|meiosis inhibitor 1##BC144638|MEI1|150365|meiosis inhibitor 1##BC035403|C22orf46|79640|chromosome 22 open reading frame 46##NM_001142964|C22orf46|79640|chromosome 22 open reading frame 46##AK131457|C22orf46|79640|chromosome 22 open reading frame 46##BC005358|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##AF155235|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##NM_001003796|NHP2L1|4809|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)##NM_024821|CCDC134|79879|coiled-coil domain containing 134##AK026002|CCDC134|79879|coiled-coil domain containing 134##AK299311|CCDC134|79879|coiled-coil domain containing 134##BC017693|CCDC134|79879|coiled-coil domain containing 134##CR456484|CCDC134|79879|coiled-coil domain containing 134##NM_004599|SREBF2|6721|sterol regulatory element binding transcription factor 2##BC051799|SREBF2|6721|sterol regulatory element binding transcription factor 2	0.99553	0.0	denovo_WM_7:-15:0.488	denovo_WM_7:-18:0.325
chr4	176744170	176744313	reg1019614.p1	3.905	+	BC032904 NM_201591	-10060	-	BC044612 BC053954 TSC_hg19_v1_chr4_-_176733905	-10335	-	BC010461 BC022508 TSC_hg19_v1_chr4_-_176733419 D49958	-10800	-	BC022528 TSC_hg19_v1_chr4_-_176923504	179253	-	AK226176 TSC_hg19_v1_chr4_-_176923545	179299	-	TSC_hg19_v1_chr4_-_176923575 NM_005277 NM_201592	179368	-	BC032904|GPM6A|2823|glycoprotein M6A##NM_201591|GPM6A|2823|glycoprotein M6A##BC044612|GPM6A|2823|glycoprotein M6A##BC053954|GPM6A|2823|glycoprotein M6A##BC010461|GPM6A|2823|glycoprotein M6A##BC022508|GPM6A|2823|glycoprotein M6A##D49958|GPM6A|2823|glycoprotein M6A##BC022528|GPM6A|2823|glycoprotein M6A##AK226176|GPM6A|2823|glycoprotein M6A##NM_005277|GPM6A|2823|glycoprotein M6A##NM_201592|GPM6A|2823|glycoprotein M6A	0.031523	0.0	
chr10	88161863	88162043	reg1015253.p2	3.904	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-35690	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-1977258	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2030335	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	119541	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	119577	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	252441	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.929967	0.0	denovo_WM_7:-53:0.611	denovo_WM_7:-54:0.298
chr1	114889290	114889405	reg1012218.p1	3.904	+	BC044948 NM_001253772	-192876	-	AK056448 NM_205848	-194286	-	AY358954 NM_020190 AY464015 AK092766 AX747716 AK075369 TSC_hg19_v1_chr1_+_114522099 AK297902 AF201945 AK223221 BC009920 AK222471 AK075479 AK075353 AK075544 AB590196 DQ892781 DQ896028 CU679529	-367264	+	TSC_hg19_v1_chr1_-_115053724 AB384564 AB029036	164363	-	TSC_hg19_v1_chr1_-_115053767 AF119043 AF220136 AF220137 NM_015906 NM_033020	164431	-	AB451245 AB451369 AB528339 AF081788 BT019390 CR542037 CU675083 DQ892529 EU176700 EU832613 EU832684 TSC_hg19_v1_chr1_-_115124237 BC005285 BC012623 BC039238 AK222637 AK313141 BC022880 AB020623 NM_005872	234896	-	BC044948|SYT6|148281|synaptotagmin VI##NM_001253772|SYT6|148281|synaptotagmin VI##AK056448|SYT6|148281|synaptotagmin VI##NM_205848|SYT6|148281|synaptotagmin VI##AY358954|OLFML3|56944|olfactomedin-like 3##NM_020190|OLFML3|56944|olfactomedin-like 3##AY464015|OLFML3|56944|olfactomedin-like 3##AK092766|OLFML3|56944|olfactomedin-like 3##AK075369|OLFML3|56944|olfactomedin-like 3##AK297902|OLFML3|56944|olfactomedin-like 3##AF201945|OLFML3|56944|olfactomedin-like 3##AK223221|OLFML3|56944|olfactomedin-like 3##BC009920|OLFML3|56944|olfactomedin-like 3##AK222471|OLFML3|56944|olfactomedin-like 3##AK075479|OLFML3|56944|olfactomedin-like 3##AK075353|OLFML3|56944|olfactomedin-like 3##AK075544|OLFML3|56944|olfactomedin-like 3##DQ892781|OLFML3|56944|olfactomedin-like 3##DQ896028|OLFML3|56944|olfactomedin-like 3##AB029036|TRIM33|51592|tripartite motif containing 33##AF119043|TRIM33|51592|tripartite motif containing 33##AF220136|TRIM33|51592|tripartite motif containing 33##AF220137|TRIM33|51592|tripartite motif containing 33##NM_015906|TRIM33|51592|tripartite motif containing 33##NM_033020|TRIM33|51592|tripartite motif containing 33##AB451245|BCAS2|10286|breast carcinoma amplified sequence 2##AB451369|BCAS2|10286|breast carcinoma amplified sequence 2##AF081788|BCAS2|10286|breast carcinoma amplified sequence 2##BT019390|BCAS2|10286|breast carcinoma amplified sequence 2##CR542037|BCAS2|10286|breast carcinoma amplified sequence 2##DQ892529|BCAS2|10286|breast carcinoma amplified sequence 2##EU176700|BCAS2|10286|breast carcinoma amplified sequence 2##EU832613|BCAS2|10286|breast carcinoma amplified sequence 2##EU832684|BCAS2|10286|breast carcinoma amplified sequence 2##BC005285|BCAS2|10286|breast carcinoma amplified sequence 2##BC012623|BCAS2|10286|breast carcinoma amplified sequence 2##BC039238|BCAS2|10286|breast carcinoma amplified sequence 2##AK222637|BCAS2|10286|breast carcinoma amplified sequence 2##AK313141|BCAS2|10286|breast carcinoma amplified sequence 2##BC022880|BCAS2|10286|breast carcinoma amplified sequence 2##AB020623|BCAS2|10286|breast carcinoma amplified sequence 2##NM_005872|BCAS2|10286|breast carcinoma amplified sequence 2	0.0	0.776291	CTCF.p2:-11:0.776
chr19	14778862	14778996	reg1000522.p1	3.904	+	AK127809 NM_001204118 NM_207390 BC140848 BC144664 BC144665	-85015	+	CR450354 DQ891899 DQ895085 AF217091 TSC_hg19_v1_chr19_-_14682879 M33374 AF112200 BC002595 NM_004146	-96080	-	TSC_hg19_v1_chr19_+_14640435 AK001416 AK315412 BC007801 BC013881 BC005952 AF038958 BC002425 BC034484 AF222742 AX771269 AF038959 AB529027 DQ891949 DQ895135 EU832830 GQ129437	-138470	+	AY358817 AK290909 BC121130 BC121131 BC128053 BC148282 AK298653 AF239764 BC142639 AL832663 NM_032571	6748	-	AK291471 AK094028 AX748419 TSC_hg19_v1_chr19_+_14800878 AK307147 BC064571 NM_032433 BC048107 BX647475 AF372702 AK309208	21835	+	BC082991 AF114491 AK301458 AK222891 AK298700 TSC_hg19_v1_chr19_-_14887654	108709	-	NM_001204118|CLEC17A|388512|C-type lectin domain family 17, member A##NM_207390|CLEC17A|388512|C-type lectin domain family 17, member A##BC140848|CLEC17A|388512|C-type lectin domain family 17, member A##BC144664|CLEC17A|388512|C-type lectin domain family 17, member A##BC144665|CLEC17A|388512|C-type lectin domain family 17, member A##CR450354|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ891899|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##DQ895085|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF217091|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##M33374|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AF112200|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##BC002595|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##NM_004146|NDUFB7|4713|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa##AK001416|TECR|9524|trans-2,3-enoyl-CoA reductase##AK315412|TECR|9524|trans-2,3-enoyl-CoA reductase##BC007801|TECR|9524|trans-2,3-enoyl-CoA reductase##BC013881|TECR|9524|trans-2,3-enoyl-CoA reductase##BC005952|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038958|TECR|9524|trans-2,3-enoyl-CoA reductase##BC002425|TECR|9524|trans-2,3-enoyl-CoA reductase##BC034484|TECR|9524|trans-2,3-enoyl-CoA reductase##AF222742|TECR|9524|trans-2,3-enoyl-CoA reductase##AF038959|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ891949|TECR|9524|trans-2,3-enoyl-CoA reductase##DQ895135|TECR|9524|trans-2,3-enoyl-CoA reductase##EU832830|TECR|9524|trans-2,3-enoyl-CoA reductase##GQ129437|TECR|9524|trans-2,3-enoyl-CoA reductase##AY358817|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK290909|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121130|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC121131|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC128053|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC148282|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK298653|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AF239764|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##BC142639|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AL832663|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##NM_032571|EMR3|84658|egf-like module containing, mucin-like, hormone receptor-like 3##AK291471|ZNF333|84449|zinc finger protein 333##AK094028|ZNF333|84449|zinc finger protein 333##AK307147|ZNF333|84449|zinc finger protein 333##BC064571|ZNF333|84449|zinc finger protein 333##NM_032433|ZNF333|84449|zinc finger protein 333##BC048107|ZNF333|84449|zinc finger protein 333##BX647475|ZNF333|84449|zinc finger protein 333##AF372702|ZNF333|84449|zinc finger protein 333##AK309208|ZNF333|84449|zinc finger protein 333##BC082991|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AF114491|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK301458|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK222891|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2##AK298700|EMR2|30817|egf-like module containing, mucin-like, hormone receptor-like 2	0.0	0.0	
chr5	130598817	130598997	reg1009483.p2	3.904	+	TSC_hg19_v1_chr5_+_130506676 BC037930 BC047079	-92236	+	AK000803 NM_181705 TSC_hg19_v1_chr5_+_130506648	-92264	+	TSC_hg19_v1_chr5_-_130501019 NM_005340	-97864	-	NM_001038702 NM_020240 TSC_hg19_v1_chr5_+_130599737	814	+	TSC_hg19_v1_chr5_+_130599764 BC023555 BC050430	849	+	AK312406 TSC_hg19_v1_chr5_+_130599768	861	+	BC037930|LYRM7|90624|Lyrm7 homolog (mouse)##BC047079|LYRM7|90624|Lyrm7 homolog (mouse)##AK000803|LYRM7|90624|Lyrm7 homolog (mouse)##NM_181705|LYRM7|90624|Lyrm7 homolog (mouse)##NM_005340|HINT1|3094|histidine triad nucleotide binding protein 1##NM_001038702|CDC42SE2|56990|CDC42 small effector 2##NM_020240|CDC42SE2|56990|CDC42 small effector 2##BC023555|CDC42SE2|56990|CDC42 small effector 2##BC050430|CDC42SE2|56990|CDC42 small effector 2##AK312406|CDC42SE2|56990|CDC42 small effector 2	0.993276	0.0	denovo_WM_7:-103:0.248	denovo_WM_7:-104:0.248	denovo_WM_7:-105:0.248	denovo_WM_7:-106:0.248
chr5	168374433	168374543	reg1018817.p1	3.904	+	TSC_hg19_v1_chr5_-_168271862 BC023515	-102629	-	TSC_hg19_v1_chr5_-_168006609 BC013705 NM_024594	-367973	-	TSC_hg19_v1_chr5_-_168006352 AK223285 AK022961	-368137	-	AB383998 AK310549 TSC_hg19_v1_chr5_-_168728144 BC142665 BC142717 AY358884 AB017169 BC098388 AB011538 BC146759 NM_003062	353470	-	NM_017785 TSC_hg19_v1_chr5_+_169010791 AK304623 AF269167 AK310442 AK308835 BC012568 AY517557	636233	+	TSC_hg19_v1_chr5_+_169064250 NM_004946	689756	+	BC013705|PANK3|79646|pantothenate kinase 3##NM_024594|PANK3|79646|pantothenate kinase 3##AK223285|PANK3|79646|pantothenate kinase 3##AK022961|PANK3|79646|pantothenate kinase 3##AK310549|SLIT3|6586|slit homolog 3 (Drosophila)##BC142665|SLIT3|6586|slit homolog 3 (Drosophila)##BC142717|SLIT3|6586|slit homolog 3 (Drosophila)##AY358884|SLIT3|6586|slit homolog 3 (Drosophila)##AB017169|SLIT3|6586|slit homolog 3 (Drosophila)##BC098388|SLIT3|6586|slit homolog 3 (Drosophila)##AB011538|SLIT3|6586|slit homolog 3 (Drosophila)##BC146759|SLIT3|6586|slit homolog 3 (Drosophila)##NM_003062|SLIT3|6586|slit homolog 3 (Drosophila)##NM_017785|CCDC99|54908|coiled-coil domain containing 99##AK304623|CCDC99|54908|coiled-coil domain containing 99##AF269167|CCDC99|54908|coiled-coil domain containing 99##AK310442|CCDC99|54908|coiled-coil domain containing 99##AK308835|CCDC99|54908|coiled-coil domain containing 99##BC012568|CCDC99|54908|coiled-coil domain containing 99##AY517557|CCDC99|54908|coiled-coil domain containing 99##NM_004946|DOCK2|1794|dedicator of cytokinesis 2	0.122724	0.98819	CTCF.p2:-31:0.988
chr5	176498965	176499074	reg1012332.p2	3.904	+	AK297448 AK297584 NM_012279 TSC_hg19_v1_chr5_+_176449708 AK295549 AF083340 AK026627 AK300065 BC007775 AL359576 CR749692 AK131469 AK300738 AB463365 AM392799 AM393768	-49300	+	AK304794 BX537376 NM_016290 AK023044 BC032561 BC006078 BC014069 AF349313 NM_001199297 NM_001199298 TSC_hg19_v1_chr5_-_176433806	-65431	-	U51333 BC028129 NM_002115	-172696	-	TSC_hg19_v1_chr5_+_176513910 BC011847 AK301169 AK225280 AK225909 NM_002011 NM_213647 L03840	14863	+	NM_022963 X57205 AF202063 EU826602 AF359241 AB590389 DQ893458 DQ896348 EU826603 JN007471 JN007472 JN007473 JN007474 JN007475 JN007476 JN007477 JN007478 JN007479 JN007480 JN007481 JN007482	17557	+	TSC_hg19_v1_chr5_+_176560037 AK126591	61011	+	AK297448|ZNF346|23567|zinc finger protein 346##NM_012279|ZNF346|23567|zinc finger protein 346##AK295549|ZNF346|23567|zinc finger protein 346##AF083340|ZNF346|23567|zinc finger protein 346##AK026627|ZNF346|23567|zinc finger protein 346##AK300065|ZNF346|23567|zinc finger protein 346##BC007775|ZNF346|23567|zinc finger protein 346##AL359576|ZNF346|23567|zinc finger protein 346##CR749692|ZNF346|23567|zinc finger protein 346##AK131469|ZNF346|23567|zinc finger protein 346##AK300738|ZNF346|23567|zinc finger protein 346##AM392799|ZNF346|23567|zinc finger protein 346##AM393768|ZNF346|23567|zinc finger protein 346##AK304794|UIMC1|51720|ubiquitin interaction motif containing 1##BX537376|UIMC1|51720|ubiquitin interaction motif containing 1##NM_016290|UIMC1|51720|ubiquitin interaction motif containing 1##AK023044|UIMC1|51720|ubiquitin interaction motif containing 1##BC032561|UIMC1|51720|ubiquitin interaction motif containing 1##BC006078|UIMC1|51720|ubiquitin interaction motif containing 1##AF349313|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199297|UIMC1|51720|ubiquitin interaction motif containing 1##NM_001199298|UIMC1|51720|ubiquitin interaction motif containing 1##U51333|HK3|3101|hexokinase 3 (white cell)##BC028129|HK3|3101|hexokinase 3 (white cell)##NM_002115|HK3|3101|hexokinase 3 (white cell)##BC011847|FGFR4|2264|fibroblast growth factor receptor 4##AK301169|FGFR4|2264|fibroblast growth factor receptor 4##AK225280|FGFR4|2264|fibroblast growth factor receptor 4##AK225909|FGFR4|2264|fibroblast growth factor receptor 4##NM_002011|FGFR4|2264|fibroblast growth factor receptor 4##NM_213647|FGFR4|2264|fibroblast growth factor receptor 4##L03840|FGFR4|2264|fibroblast growth factor receptor 4##NM_022963|FGFR4|2264|fibroblast growth factor receptor 4##X57205|FGFR4|2264|fibroblast growth factor receptor 4##AF202063|FGFR4|2264|fibroblast growth factor receptor 4##EU826602|FGFR4|2264|fibroblast growth factor receptor 4##AF359241|FGFR4|2264|fibroblast growth factor receptor 4##DQ893458|FGFR4|2264|fibroblast growth factor receptor 4##DQ896348|FGFR4|2264|fibroblast growth factor receptor 4##EU826603|FGFR4|2264|fibroblast growth factor receptor 4##AK126591|NSD1|64324|nuclear receptor binding SET domain protein 1	0.0	0.71482	CTCF.p2:0:0.715
chr11	11886874	11886951	reg1008655.p1	3.903	+	TSC_hg19_v1_chr11_+_11863521 BC071559 AK027362 AK092290 AX747455	-23344	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	-23421	+	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	-23896	+	AY587550 DQ892906 DQ896157 AK295441 AK225156 TSC_hg19_v1_chr11_-_12030174 AB033421 AF177396 AK092979 AK098756 NM_001018057	143244	-	TSC_hg19_v1_chr11_-_12030604 AB034203	143662	-	TSC_hg19_v1_chr11_-_12030622 BC007660 NM_015881	143713	-	BC071559|USP47|55031|ubiquitin specific peptidase 47##AK027362|USP47|55031|ubiquitin specific peptidase 47##AK092290|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AY587550|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##DQ892906|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##DQ896157|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK295441|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK225156|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AB033421|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AF177396|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK092979|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AK098756|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_001018057|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##AB034203|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##BC007660|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)##NM_015881|DKK3|27122|dickkopf 3 homolog (Xenopus laevis)	0.01854	0.0	
chr15	40049222	40049332	reg1009579.p2	3.903	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	-175948	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	-506352	+	AK093014 AX747856 BC119016 BC119810 NM_207444	-1060479	+	AK093308 AX748045 BC045191 NM_152597	25751	-	AK091251 TSC_hg19_v1_chr15_+_40075106	25829	+	CU688250 TSC_hg19_v1_chr15_-_40212342	163008	-	AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1	0.0	0.998154	CTCF.p2:-4:0.998
chr2	136996579	136996701	reg1017138.p1	3.903	+	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	-120964	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	-122842	-	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-253424	-	TSC_hg19_v1_chr2_+_137523114 AK299929	526476	+	NM_001080427	751821	+	NM_001024074 NM_001024075 NM_006895 AF523356 AF523357 AF523358 AF523359 AF523360 U08092 TSC_hg19_v1_chr2_+_138722046 BC005907 AK301462 AK313804 BC020677 D16224 AB590282 CU676632 DQ891166 DQ894348	1725294	+	AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001080427|THSD7B|80731|thrombospondin, type I, domain containing 7B##NM_001024074|HNMT|3176|histamine N-methyltransferase##NM_001024075|HNMT|3176|histamine N-methyltransferase##NM_006895|HNMT|3176|histamine N-methyltransferase##AF523356|HNMT|3176|histamine N-methyltransferase##AF523357|HNMT|3176|histamine N-methyltransferase##AF523358|HNMT|3176|histamine N-methyltransferase##AF523359|HNMT|3176|histamine N-methyltransferase##AF523360|HNMT|3176|histamine N-methyltransferase##U08092|HNMT|3176|histamine N-methyltransferase##BC005907|HNMT|3176|histamine N-methyltransferase##AK301462|HNMT|3176|histamine N-methyltransferase##AK313804|HNMT|3176|histamine N-methyltransferase##BC020677|HNMT|3176|histamine N-methyltransferase##D16224|HNMT|3176|histamine N-methyltransferase##DQ891166|HNMT|3176|histamine N-methyltransferase##DQ894348|HNMT|3176|histamine N-methyltransferase	0.0	0.0	
chr7	127044783	127044924	reg1013043.p1	3.903	+	TSC_hg19_v1_chr7_-_127032759 AF218032 NM_176814 AK309674 BC047641	-12095	-	TSC_hg19_v1_chr7_-_126893165 AK290197	-151701	-	TSC_hg19_v1_chr7_-_126892310 AK315203 NM_001127323	-152488	-	AF525417 AK315472 BC078665 TSC_hg19_v1_chr7_-_127225651	180686	-	BC014100 NM_024523 TSC_hg19_v1_chr7_-_127225654	180819	-	NM_001662 TSC_hg19_v1_chr7_+_127228469 AK307297 AK308548 BC033104 M57567 AK297026 AK312107 BC003043 AB528679 AF493884 BT007087	183625	+	AF218032|ZNF800|168850|zinc finger protein 800##NM_176814|ZNF800|168850|zinc finger protein 800##AK309674|ZNF800|168850|zinc finger protein 800##BC047641|ZNF800|168850|zinc finger protein 800##AK290197|GRM8|2918|glutamate receptor, metabotropic 8##AK315203|GRM8|2918|glutamate receptor, metabotropic 8##NM_001127323|GRM8|2918|glutamate receptor, metabotropic 8##AF525417|GCC1|79571|GRIP and coiled-coil domain containing 1##AK315472|GCC1|79571|GRIP and coiled-coil domain containing 1##BC078665|GCC1|79571|GRIP and coiled-coil domain containing 1##BC014100|GCC1|79571|GRIP and coiled-coil domain containing 1##NM_024523|GCC1|79571|GRIP and coiled-coil domain containing 1##NM_001662|ARF5|381|ADP-ribosylation factor 5##AK307297|ARF5|381|ADP-ribosylation factor 5##AK308548|ARF5|381|ADP-ribosylation factor 5##BC033104|ARF5|381|ADP-ribosylation factor 5##M57567|ARF5|381|ADP-ribosylation factor 5##AK297026|ARF5|381|ADP-ribosylation factor 5##AK312107|ARF5|381|ADP-ribosylation factor 5##BC003043|ARF5|381|ADP-ribosylation factor 5##AF493884|ARF5|381|ADP-ribosylation factor 5##BT007087|ARF5|381|ADP-ribosylation factor 5	0.0	0.0	
chr7	1609699	1609831	reg1015293.p2	3.903	+	AB067495 TSC_hg19_v1_chr7_+_1609735	-32	+	TSC_hg19_v1_chr7_+_1609724 AK054665	-52	+	TSC_hg19_v1_chr7_-_1609646 BC027171 NM_032302 NM_001134340	-120	-	TSC_hg19_v1_chr7_+_1609777 BX538028 BC036405 BC047649	56	+	NM_001128636	139032	+	TSC_hg19_v1_chr7_-_1980177 BC018870	370398	-	AB067495|KIAA1908|114796|uncharacterized LOC114796##AK054665|KIAA1908|114796|uncharacterized LOC114796##BC027171|PSMG3|84262|proteasome (prosome, macropain) assembly chaperone 3##NM_032302|PSMG3|84262|proteasome (prosome, macropain) assembly chaperone 3##NM_001134340|PSMG3|84262|proteasome (prosome, macropain) assembly chaperone 3##BX538028|KIAA1908|114796|uncharacterized LOC114796##BC036405|KIAA1908|114796|uncharacterized LOC114796##BC047649|KIAA1908|114796|uncharacterized LOC114796##NM_001128636|ELFN1|392617|extracellular leucine-rich repeat and fibronectin type III domain containing 1##BC018870|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)	0.0	0.0	
chr9	99824947	99825071	reg1014895.p1	3.903	+	AK312806 NM_001201575	-23085	-	AF070448 BC023504 Y14734 AB001928 AK310645 AK310740 BC110512 AY358641 NM_001333	-23531	-	TSC_hg19_v1_chr9_-_99775872 BC005058	-49109	-	NM_020893 CR749320	244929	+	TSC_hg19_v1_chr9_+_100174364 NM_014290 BC028694	349264	+	TSC_hg19_v1_chr9_+_100174377 AK294488 AK314853	349370	+	AK312806|CTSL2|1515|cathepsin L2##NM_001201575|CTSL2|1515|cathepsin L2##AF070448|CTSL2|1515|cathepsin L2##BC023504|CTSL2|1515|cathepsin L2##Y14734|CTSL2|1515|cathepsin L2##AB001928|CTSL2|1515|cathepsin L2##AK310645|CTSL2|1515|cathepsin L2##AK310740|CTSL2|1515|cathepsin L2##BC110512|CTSL2|1515|cathepsin L2##AY358641|CTSL2|1515|cathepsin L2##NM_001333|CTSL2|1515|cathepsin L2##BC005058|HIATL2|84278|hippocampus abundant transcript-like 2##NM_020893|C9orf174|100499483|chromosome 9 open reading frame 174##CR749320|C9orf174|100499483|chromosome 9 open reading frame 174##NM_014290|TDRD7|23424|tudor domain containing 7##BC028694|TDRD7|23424|tudor domain containing 7##AK294488|TDRD7|23424|tudor domain containing 7##AK314853|TDRD7|23424|tudor domain containing 7	0.018589	0.0	
chr10	32539357	32539485	reg1015479.p2	3.902	+	TSC_hg19_v1_chr10_-_32345341 NM_004521	-194061	-	TSC_hg19_v1_chr10_-_32345335 BC080604 BC010885 BC111042 AK289413 AK299542 BC065267 AK307502	-194107	-	BC126279 BC126281 TSC_hg19_v1_chr10_-_32345152 X65873	-194253	-	CU691366 TSC_hg19_v1_chr10_-_32636082 AK092304 AX747467 AK309822	96541	-	TSC_hg19_v1_chr10_-_32636116 AF277374 FJ230887 NM_025209	96687	-	TSC_hg19_v1_chr10_-_32636137 BC036529 CR749375	96728	-	NM_004521|KIF5B|3799|kinesin family member 5B##BC080604|KIF5B|3799|kinesin family member 5B##BC010885|KIF5B|3799|kinesin family member 5B##BC111042|KIF5B|3799|kinesin family member 5B##AK289413|KIF5B|3799|kinesin family member 5B##AK299542|KIF5B|3799|kinesin family member 5B##BC065267|KIF5B|3799|kinesin family member 5B##AK307502|KIF5B|3799|kinesin family member 5B##BC126279|KIF5B|3799|kinesin family member 5B##BC126281|KIF5B|3799|kinesin family member 5B##X65873|KIF5B|3799|kinesin family member 5B##AK092304|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AK309822|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##AF277374|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##NM_025209|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##BC036529|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)##CR749375|EPC1|80314|enhancer of polycomb homolog 1 (Drosophila)	1.983995	0.0	denovo_WM_7:-21:0.817	denovo_WM_7:-56:0.507	denovo_WM_7:-62:0.216
chr12	92881075	92881196	reg1013976.p2	3.902	+	AJ845168 NM_001025232	-59212	-	AJ845165 AJ845166 NM_001025233	-63401	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-341492	-	NM_001037671 NM_001178097	215483	+	NM_001004330 AK128530	249152	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	441803	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.963779	0.0	denovo_WM_7:8:0.591
chr14	71962651	71962724	reg1010491.p1	3.902	+	TSC_hg19_v1_chr14_+_71374441 BC140784	-588236	+	TSC_hg19_v1_chr14_+_71374143 AB023212 AF233450 BC152474 BC167161 NM_014982	-588554	+	AF251442 TSC_hg19_v1_chr14_-_71275778 BC111407 AY327900 BC133706 NM_033141	-686878	-	AF090989 AF090990 NM_015556	33354	+	AK294895 NM_001204423	436129	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	436466	+	BC140784|PCNX|22990|pecanex homolog (Drosophila)##AB023212|PCNX|22990|pecanex homolog (Drosophila)##AF233450|PCNX|22990|pecanex homolog (Drosophila)##BC152474|PCNX|22990|pecanex homolog (Drosophila)##BC167161|PCNX|22990|pecanex homolog (Drosophila)##NM_014982|PCNX|22990|pecanex homolog (Drosophila)##AF251442|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC111407|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AY327900|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##BC133706|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##NM_033141|MAP3K9|4293|mitogen-activated protein kinase kinase kinase 9##AF090989|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AF090990|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##NM_015556|SIPA1L1|26037|signal-induced proliferation-associated 1 like 1##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6	2.516112	0.0	denovo_WM_7:-45:0.355	denovo_WM_7:-59:0.368	denovo_WM_7:-61:0.323	denovo_WM_7:-76:0.505
chr5	56515259	56515404	reg1014692.p2	3.902	+	NM_001127236 AL136844 AB463051 AM392551 AM393442	-5403	+	BC113004 NM_001127235	-44058	+	TSC_hg19_v1_chr5_+_56469911 AL161991 AY226828	-45434	+	BC137470 BC137473 BX648504 NM_001017992	263263	-	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	1240605	-	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	1271963	+	NM_001127236|GPBP1|65056|GC-rich promoter binding protein 1##AL136844|GPBP1|65056|GC-rich promoter binding protein 1##AM392551|GPBP1|65056|GC-rich promoter binding protein 1##AM393442|GPBP1|65056|GC-rich promoter binding protein 1##BC113004|GPBP1|65056|GC-rich promoter binding protein 1##NM_001127235|GPBP1|65056|GC-rich promoter binding protein 1##AL161991|GPBP1|65056|GC-rich promoter binding protein 1##AY226828|GPBP1|65056|GC-rich promoter binding protein 1##BC137470|ACTBL2|345651|actin, beta-like 2##BC137473|ACTBL2|345651|actin, beta-like 2##BX648504|ACTBL2|345651|actin, beta-like 2##NM_001017992|ACTBL2|345651|actin, beta-like 2##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane	1.673004	0.0	denovo_WM_7:-80:0.917	denovo_WM_7:-104:0.348
chr8	11357283	11357384	reg1014530.p1	3.902	+	S76617 NM_001715 BC018703 BC004473 BC038555	-5740	+	AJ301564 TSC_hg19_v1_chr8_-_11324263 AL834122 BC029587 NM_053279	-33104	-	BC038546 TSC_hg19_v1_chr8_-_11205010	-152329	-	TSC_hg19_v1_chr8_+_11561713 NM_002052 BC033672	204387	+	TSC_hg19_v1_chr8_+_11627280 NM_001135746 NM_001135747 NM_001135748 NM_145043 AK097389 AK294224 AK225837 AK056206 BX537529 BC013952 BC013964	269935	+	TSC_hg19_v1_chr8_+_11660183 NM_004462	302851	+	S76617|BLK|640|B lymphoid tyrosine kinase##NM_001715|BLK|640|B lymphoid tyrosine kinase##BC018703|BLK|640|B lymphoid tyrosine kinase##BC004473|BLK|640|B lymphoid tyrosine kinase##BC038555|BLK|640|B lymphoid tyrosine kinase##AJ301564|FAM167A|83648|family with sequence similarity 167, member A##AL834122|FAM167A|83648|family with sequence similarity 167, member A##BC029587|FAM167A|83648|family with sequence similarity 167, member A##NM_053279|FAM167A|83648|family with sequence similarity 167, member A##BC038546|LOC100129129|100129129|uncharacterized LOC100129129##NM_002052|GATA4|2626|GATA binding protein 4##BC033672|GATA4|2626|GATA binding protein 4##NM_001135746|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135747|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_001135748|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_145043|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK097389|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK294224|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK225837|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##AK056206|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BX537529|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013952|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##BC013964|NEIL2|252969|nei endonuclease VIII-like 2 (E. coli)##NM_004462|FDFT1|2222|farnesyl-diphosphate farnesyltransferase 1	0.0	0.0	
chr13	36532053	36532152	reg1013659.p1	3.901	+	AK299059 AK311183 AK295777 TSC_hg19_v1_chr13_-_36429805 CR627093 AK308925 AK311434 AK311438 AK311195 NM_001195415 NM_001195416 NM_001195430	-102205	-	AK294737 NM_001204197 TSC_hg19_v1_chr13_+_36050945 AK315939	-481177	+	BC028170 AB593021 TSC_hg19_v1_chr13_-_36050827 AB593022 AK313185 AB073388 NM_005584	-481306	-	TSC_hg19_v1_chr13_-_36705434 AB002367 BC152456	173335	-	AK295102 TSC_hg19_v1_chr13_-_36705468	173371	-	NM_004734 TSC_hg19_v1_chr13_-_36705517	173414	-	AK299059|DCLK1|9201|doublecortin-like kinase 1##AK311183|DCLK1|9201|doublecortin-like kinase 1##AK295777|DCLK1|9201|doublecortin-like kinase 1##CR627093|DCLK1|9201|doublecortin-like kinase 1##AK308925|DCLK1|9201|doublecortin-like kinase 1##AK311434|DCLK1|9201|doublecortin-like kinase 1##AK311438|DCLK1|9201|doublecortin-like kinase 1##AK311195|DCLK1|9201|doublecortin-like kinase 1##NM_001195415|DCLK1|9201|doublecortin-like kinase 1##NM_001195416|DCLK1|9201|doublecortin-like kinase 1##NM_001195430|DCLK1|9201|doublecortin-like kinase 1##AK294737|NBEA|26960|neurobeachin##NM_001204197|NBEA|26960|neurobeachin##AK315939|NBEA|26960|neurobeachin##BC028170|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593021|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB593022|MAB21L1|4081|mab-21-like 1 (C. elegans)##AK313185|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB073388|MAB21L1|4081|mab-21-like 1 (C. elegans)##NM_005584|MAB21L1|4081|mab-21-like 1 (C. elegans)##AB002367|DCLK1|9201|doublecortin-like kinase 1##BC152456|DCLK1|9201|doublecortin-like kinase 1##AK295102|DCLK1|9201|doublecortin-like kinase 1##NM_004734|DCLK1|9201|doublecortin-like kinase 1	0.0	0.0	
chr15	83742570	83742719	reg1009460.p1	3.901	+	NM_001011885 NM_025238 TSC_hg19_v1_chr15_-_83736124	-6529	-	TSC_hg19_v1_chr15_-_83736005 BC028097	-6640	-	TSC_hg19_v1_chr15_-_83735995 AB462966 AF529369 AM393763 AY364253 DQ891458 DQ894635 CU688394 BC017464 AK000731 AK225355 AK225362 AF355402 AF257241 AL136853	-6700	-	BC063487 NM_001144903 NM_023003 AF255922 TSC_hg19_v1_chr15_+_83776396 AK223246 AK292100 BC032007 CU687748 DQ021909 AK295568	33734	+	AB529208 TSC_hg19_v1_chr15_-_83876576 BC015483 AB029156 AF110642 AF151900 AK001280 NM_016073	133770	-	BC040554 TSC_hg19_v1_chr15_-_83876823	134152	-	NM_001011885|BTBD1|53339|BTB (POZ) domain containing 1##NM_025238|BTBD1|53339|BTB (POZ) domain containing 1##BC028097|BTBD1|53339|BTB (POZ) domain containing 1##AF529369|BTBD1|53339|BTB (POZ) domain containing 1##AM393763|BTBD1|53339|BTB (POZ) domain containing 1##AY364253|BTBD1|53339|BTB (POZ) domain containing 1##DQ891458|BTBD1|53339|BTB (POZ) domain containing 1##DQ894635|BTBD1|53339|BTB (POZ) domain containing 1##BC017464|BTBD1|53339|BTB (POZ) domain containing 1##AK000731|BTBD1|53339|BTB (POZ) domain containing 1##AK225355|BTBD1|53339|BTB (POZ) domain containing 1##AK225362|BTBD1|53339|BTB (POZ) domain containing 1##AF355402|BTBD1|53339|BTB (POZ) domain containing 1##AF257241|BTBD1|53339|BTB (POZ) domain containing 1##AL136853|BTBD1|53339|BTB (POZ) domain containing 1##BC063487|TM6SF1|53346|transmembrane 6 superfamily member 1##NM_001144903|TM6SF1|53346|transmembrane 6 superfamily member 1##NM_023003|TM6SF1|53346|transmembrane 6 superfamily member 1##AF255922|TM6SF1|53346|transmembrane 6 superfamily member 1##AK223246|TM6SF1|53346|transmembrane 6 superfamily member 1##AK292100|TM6SF1|53346|transmembrane 6 superfamily member 1##BC032007|TM6SF1|53346|transmembrane 6 superfamily member 1##DQ021909|TM6SF1|53346|transmembrane 6 superfamily member 1##AK295568|TM6SF1|53346|transmembrane 6 superfamily member 1##BC015483|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AB029156|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AF110642|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AF151900|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##AK001280|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##NM_016073|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3##BC040554|HDGFRP3|50810|hepatoma-derived growth factor, related protein 3	1.722525	0.0	denovo_WM_7:89:0.341	denovo_WM_7:90:0.244	denovo_WM_7:106:0.207	denovo_WM_7:107:0.204
chr20	2506304	2506484	reg1004575.p1	3.901	+	AK096911 NM_024325	-16617	-	BC002897 TSC_hg19_v1_chr20_-_2489551	-16831	-	TSC_hg19_v1_chr20_-_2451439 BC003530 J04564 NM_003091 NM_198216	-54921	-	AF417580 NM_080751 AB463320	10864	+	BC104791 BC104793 NM_006392 TSC_hg19_v1_chr20_+_2633277 AK292721 BX647439 BC035369	126857	+	AL050094 TSC_hg19_v1_chr20_-_2641583	135142	-	AK096911|ZNF343|79175|zinc finger protein 343##NM_024325|ZNF343|79175|zinc finger protein 343##BC002897|ZNF343|79175|zinc finger protein 343##BC003530|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##J04564|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##NM_003091|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##NM_198216|SNRPB|6628|small nuclear ribonucleoprotein polypeptides B and B1##AF417580|TMC2|117532|transmembrane channel-like 2##NM_080751|TMC2|117532|transmembrane channel-like 2##BC104791|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BC104793|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##NM_006392|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##AK292721|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BX647439|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##BC035369|NOP56|10528|NOP56 ribonucleoprotein homolog (yeast)##AL050094|IDH3B|3420|isocitrate dehydrogenase 3 (NAD+) beta	0.0	0.0	
chr5	10505945	10506109	reg1001515.p2	3.901	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-63875	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-64024	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-152019	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	58415	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	255232	-	TSC_hg19_v1_chr5_-_10761341 BC002726	255315	-	AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein	0.028678	0.0	
chr5	124061004	124061107	reg1012458.p2	3.901	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1213173	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1301911	-	NM_001136239 AK297992 AF272898 AF272899	-1636211	+	BC131507 AB033107 BC151226 NM_020747	19733	-	NM_001146319 AK316288 AK300154	1634759	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1697788	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr8	37991987	37992167	reg1007354.p1	3.901	+	NM_001105214 AK291938 AF056717 BC015936	-28675	+	TSC_hg19_v1_chr8_+_37963046 AK291750 AK293699 AB020982 AF056718 AK298483 AB385056 AK311336	-28993	+	NM_004674 TSC_hg19_v1_chr8_+_37963033	-29056	+	CU679741 CR456803 CR541850 DQ891806 DQ894990 BC010550 AF035277 TSC_hg19_v1_chr8_-_38008471 U17280 AK315122 BX647744 AK090513 S79669 NM_000349	16388	-	AB527991 BC001767 TSC_hg19_v1_chr8_-_38034002 AF000177 AK312159 AJ238094	41857	-	TSC_hg19_v1_chr8_+_38034068 BC000800 NM_001204878 NM_004874	42017	+	NM_001105214|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK291938|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AF056717|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##BC015936|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK291750|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK293699|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AB020982|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AF056718|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK298483|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##AK311336|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##NM_004674|ASH2L|9070|ash2 (absent, small, or homeotic)-like (Drosophila)##CR456803|STAR|6770|steroidogenic acute regulatory protein##CR541850|STAR|6770|steroidogenic acute regulatory protein##DQ891806|STAR|6770|steroidogenic acute regulatory protein##DQ894990|STAR|6770|steroidogenic acute regulatory protein##BC010550|STAR|6770|steroidogenic acute regulatory protein##AF035277|STAR|6770|steroidogenic acute regulatory protein##U17280|STAR|6770|steroidogenic acute regulatory protein##AK315122|STAR|6770|steroidogenic acute regulatory protein##BX647744|STAR|6770|steroidogenic acute regulatory protein##AK090513|STAR|6770|steroidogenic acute regulatory protein##S79669|STAR|6770|steroidogenic acute regulatory protein##NM_000349|STAR|6770|steroidogenic acute regulatory protein##BC001767|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AF000177|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AK312159|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##AJ238094|LSM1|27257|LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)##BC000800|BAG4|9530|BCL2-associated athanogene 4##NM_001204878|BAG4|9530|BCL2-associated athanogene 4##NM_004874|BAG4|9530|BCL2-associated athanogene 4	0.0	0.0	
chr9	116178841	116178956	reg1013773.p1	3.901	+	AK074762 NM_017443	-5909	-	AK313867 TSC_hg19_v1_chr9_+_116172965 BC033037 AK301872 BC026884 NM_152786	-5921	+	TSC_hg19_v1_chr9_-_116172658 AK074629	-6231	-	AK128127 NM_144488	28112	+	TSC_hg19_v1_chr9_+_116226007 AK125059 NM_017790 AK074977	47116	+	AF463495 NM_130795 AK096840 BC042555 CU692096 AF490840	84883	+	AK074762|POLE3|54107|polymerase (DNA directed), epsilon 3 (p17 subunit)##NM_017443|POLE3|54107|polymerase (DNA directed), epsilon 3 (p17 subunit)##AK313867|C9orf43|257169|chromosome 9 open reading frame 43##BC033037|C9orf43|257169|chromosome 9 open reading frame 43##AK301872|C9orf43|257169|chromosome 9 open reading frame 43##BC026884|C9orf43|257169|chromosome 9 open reading frame 43##NM_152786|C9orf43|257169|chromosome 9 open reading frame 43##AK074629|POLE3|54107|polymerase (DNA directed), epsilon 3 (p17 subunit)##AK128127|RGS3|5998|regulator of G-protein signaling 3##NM_144488|RGS3|5998|regulator of G-protein signaling 3##AK125059|RGS3|5998|regulator of G-protein signaling 3##NM_017790|RGS3|5998|regulator of G-protein signaling 3##AK074977|RGS3|5998|regulator of G-protein signaling 3##AF463495|RGS3|5998|regulator of G-protein signaling 3##NM_130795|RGS3|5998|regulator of G-protein signaling 3##AK096840|RGS3|5998|regulator of G-protein signaling 3##BC042555|RGS3|5998|regulator of G-protein signaling 3##AF490840|RGS3|5998|regulator of G-protein signaling 3	1.772191	0.0	denovo_WM_7:72:0.686	denovo_WM_7:89:0.578
chr10	74436504	74436598	reg1017037.p1	3.900	+	TSC_hg19_v1_chr10_-_74385887 NM_001195518 NM_006077	-50634	-	TSC_hg19_v1_chr10_-_74385854 BC004190 BC004216	-50682	-	TSC_hg19_v1_chr10_-_74385838 BC016641 AK225695 AL117423 AK225298 AK023318	-50717	-	TSC_hg19_v1_chr10_+_74451900 BC034235 NM_138357 AK075439 AK310455 AK311133 AK315519 AK301475 BC010682	15333	+	AK096435 NM_152635 BC126440 AY358339 AY013707 TSC_hg19_v1_chr10_+_74653529	216882	+	AF349540 BC093996 BC111946 BC143532 AY358032 NM_032562 AF339053 AK313712 TSC_hg19_v1_chr10_-_74714543	277960	-	NM_001195518|MICU1|10367|mitochondrial calcium uptake 1##NM_006077|MICU1|10367|mitochondrial calcium uptake 1##BC004190|MICU1|10367|mitochondrial calcium uptake 1##BC004216|MICU1|10367|mitochondrial calcium uptake 1##BC016641|MICU1|10367|mitochondrial calcium uptake 1##AK225695|MICU1|10367|mitochondrial calcium uptake 1##AL117423|MICU1|10367|mitochondrial calcium uptake 1##AK225298|MICU1|10367|mitochondrial calcium uptake 1##AK023318|MICU1|10367|mitochondrial calcium uptake 1##BC034235|MCU|90550|mitochondrial calcium uniporter##NM_138357|MCU|90550|mitochondrial calcium uniporter##AK075439|MCU|90550|mitochondrial calcium uniporter##AK310455|MCU|90550|mitochondrial calcium uniporter##AK311133|MCU|90550|mitochondrial calcium uniporter##AK315519|MCU|90550|mitochondrial calcium uniporter##AK301475|MCU|90550|mitochondrial calcium uniporter##BC010682|MCU|90550|mitochondrial calcium uniporter##AK096435|OIT3|170392|oncoprotein induced transcript 3##NM_152635|OIT3|170392|oncoprotein induced transcript 3##BC126440|OIT3|170392|oncoprotein induced transcript 3##AY358339|OIT3|170392|oncoprotein induced transcript 3##AY013707|OIT3|170392|oncoprotein induced transcript 3##AF349540|PLA2G12B|84647|phospholipase A2, group XIIB##BC093996|PLA2G12B|84647|phospholipase A2, group XIIB##BC111946|PLA2G12B|84647|phospholipase A2, group XIIB##BC143532|PLA2G12B|84647|phospholipase A2, group XIIB##AY358032|PLA2G12B|84647|phospholipase A2, group XIIB##NM_032562|PLA2G12B|84647|phospholipase A2, group XIIB##AF339053|PLA2G12B|84647|phospholipase A2, group XIIB##AK313712|PLA2G12B|84647|phospholipase A2, group XIIB	0.99691	0.0	denovo_WM_7:68:0.438	denovo_WM_7:69:0.438
chr15	64555984	64556132	reg1010700.p2	3.900	+	TSC_hg19_v1_chr15_-_64455365 BC008848 NM_000942	-100712	-	TSC_hg19_v1_chr15_-_64455219 BC032138 BC020800 AK291149 D28465	-100843	-	TSC_hg19_v1_chr15_-_64455190 BC001125 M63573 AK311074	-100861	-	BC130613 BC136504 AL832551 TSC_hg19_v1_chr15_-_64648283	92210	-	TSC_hg19_v1_chr15_-_64648373 AK225960 NM_022048	92342	-	AF529370 AY598324 AB463081 CU675545 BC005832 D14657 BC007101 TSC_hg19_v1_chr15_-_64673641 AK290748 BC016782 NM_001029989 NM_014736	117577	-	BC008848|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##NM_000942|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC032138|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC020800|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##AK291149|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##D28465|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC001125|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##M63573|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##AK311074|PPIB|5479|peptidylprolyl isomerase B (cyclophilin B)##BC130613|CSNK1G1|53944|casein kinase 1, gamma 1##BC136504|CSNK1G1|53944|casein kinase 1, gamma 1##AL832551|CSNK1G1|53944|casein kinase 1, gamma 1##AK225960|CSNK1G1|53944|casein kinase 1, gamma 1##NM_022048|CSNK1G1|53944|casein kinase 1, gamma 1##AF529370|KIAA0101|9768|KIAA0101##AY598324|KIAA0101|9768|KIAA0101##BC005832|KIAA0101|9768|KIAA0101##D14657|KIAA0101|9768|KIAA0101##BC007101|KIAA0101|9768|KIAA0101##AK290748|KIAA0101|9768|KIAA0101##BC016782|KIAA0101|9768|KIAA0101##NM_001029989|KIAA0101|9768|KIAA0101##NM_014736|KIAA0101|9768|KIAA0101	0.999716	0.0	
chr18	19862651	19862756	reg1011053.p1	3.900	+	X95701 BC027891 NM_005257 TSC_hg19_v1_chr18_+_19749549	-113227	+	AK123079 TSC_hg19_v1_chr18_-_19749029	-113717	-	CR749635 TSC_hg19_v1_chr18_+_19353654	-509056	+	HQ258502 BC132871 AF273058 BC031065 BC070128 NM_172241	135122	-	TSC_hg19_v1_chr18_+_20513319 NM_002894 U72066 AK292481	650645	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	651112	+	X95701|GATA6|2627|GATA binding protein 6##BC027891|GATA6|2627|GATA binding protein 6##NM_005257|GATA6|2627|GATA binding protein 6##AK123079|LOC100128893|100128893|uncharacterized LOC100128893##CR749635|MIB1|57534|mindbomb homolog 1 (Drosophila)##HQ258502|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC132871|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##AF273058|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC031065|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##BC070128|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_172241|CTAGE1|64693|cutaneous T-cell lymphoma-associated antigen 1##NM_002894|RBBP8|5932|retinoblastoma binding protein 8##U72066|RBBP8|5932|retinoblastoma binding protein 8##AK292481|RBBP8|5932|retinoblastoma binding protein 8##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8	0.244239	0.0	denovo_WM_7:26:0.209
chr20	61640531	61640626	reg1015262.p2	3.900	+	BC137288 BC137308 NM_080606	-2192	-	TSC_hg19_v1_chr20_+_61584095 AK095473 BC038593	-56453	+	NM_022082 TSC_hg19_v1_chr20_+_61584053 AK125597 BC025312 AK074107	-56548	+	TSC_hg19_v1_chr20_-_61847469 BC050284 NM_017798	206945	-	AY358835 AY358836 AF311388 NM_022161 NM_139317 BC014475 DQ893077 DQ896338 AF301009 AY517497	226763	+	TSC_hg19_v1_chr20_-_61884664 AK308958	244155	-	BC137288|BHLHE23|128408|basic helix-loop-helix family, member e23##BC137308|BHLHE23|128408|basic helix-loop-helix family, member e23##NM_080606|BHLHE23|128408|basic helix-loop-helix family, member e23##AK095473|SLC17A9|63910|solute carrier family 17, member 9##BC038593|SLC17A9|63910|solute carrier family 17, member 9##NM_022082|SLC17A9|63910|solute carrier family 17, member 9##AK125597|SLC17A9|63910|solute carrier family 17, member 9##BC025312|SLC17A9|63910|solute carrier family 17, member 9##AK074107|SLC17A9|63910|solute carrier family 17, member 9##BC050284|YTHDF1|54915|YTH domain family, member 1##NM_017798|YTHDF1|54915|YTH domain family, member 1##AY358835|BIRC7|79444|baculoviral IAP repeat containing 7##AY358836|BIRC7|79444|baculoviral IAP repeat containing 7##AF311388|BIRC7|79444|baculoviral IAP repeat containing 7##NM_022161|BIRC7|79444|baculoviral IAP repeat containing 7##NM_139317|BIRC7|79444|baculoviral IAP repeat containing 7##BC014475|BIRC7|79444|baculoviral IAP repeat containing 7##DQ893077|BIRC7|79444|baculoviral IAP repeat containing 7##DQ896338|BIRC7|79444|baculoviral IAP repeat containing 7##AF301009|BIRC7|79444|baculoviral IAP repeat containing 7##AY517497|BIRC7|79444|baculoviral IAP repeat containing 7##AK308958|NKAIN4|128414|Na+/K+ transporting ATPase interacting 4	0.0	0.997321	CTCF.p2:19:0.997
chr21	43203968	43204035	reg1015266.p1	3.900	+	AK027424 TSC_hg19_v1_chr21_-_43187270	-16734	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	-16779	-	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-323918	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	95497	-	BC062323 AL833323 NM_199050	142788	-	TSC_hg19_v1_chr21_-_43374095 AB047784 AB047785 NM_015500	170082	-	AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15##BC062323|C2CD2|25966|C2 calcium-dependent domain containing 2##AL833323|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_199050|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047784|C2CD2|25966|C2 calcium-dependent domain containing 2##AB047785|C2CD2|25966|C2 calcium-dependent domain containing 2##NM_015500|C2CD2|25966|C2 calcium-dependent domain containing 2	0.0	0.0	
chr2	42481724	42481846	reg1014894.p1	3.900	+	TSC_hg19_v1_chr2_+_42396514 AB275889 NM_001145076 NM_019063 AK314702 BC146799 AF177377 BC067777 BC104647 BC140845 AB374363 AB462412 AB384933	-85210	+	AB528999 TSC_hg19_v1_chr2_+_42275979	-205824	+	TSC_hg19_v1_chr2_+_42275160 NM_138370	-206653	+	AF127788 BT007371 CR542208 CU675543 DQ890566 DQ893729 TSC_hg19_v1_chr2_-_42588354 AB007618 BC005251 BC007095 NM_004718	106548	-	TSC_hg19_v1_chr2_-_42720476 AB070604 CU687106	238773	-	TSC_hg19_v1_chr2_-_42721118 AF454547 AF454548 BC071558 AF348982 NM_133329 NM_172344	239418	-	NM_001145076|EML4|27436|echinoderm microtubule associated protein like 4##NM_019063|EML4|27436|echinoderm microtubule associated protein like 4##AK314702|EML4|27436|echinoderm microtubule associated protein like 4##BC146799|EML4|27436|echinoderm microtubule associated protein like 4##AF177377|EML4|27436|echinoderm microtubule associated protein like 4##BC067777|EML4|27436|echinoderm microtubule associated protein like 4##BC104647|EML4|27436|echinoderm microtubule associated protein like 4##BC140845|EML4|27436|echinoderm microtubule associated protein like 4##NM_138370|PKDCC|91461|protein kinase domain containing, cytoplasmic homolog (mouse)##AF127788|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BT007371|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##CR542208|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ890566|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##DQ893729|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB007618|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC005251|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##BC007095|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##NM_004718|COX7A2L|9167|cytochrome c oxidase subunit VIIa polypeptide 2 like##AB070604|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF454547|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF454548|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##BC071558|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##AF348982|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##NM_133329|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3##NM_172344|KCNG3|170850|potassium voltage-gated channel, subfamily G, member 3	0.999416	0.0	denovo_WM_7:-19:0.848
chr3	49098658	49098838	reg1009884.p2	3.900	+	TSC_hg19_v1_chr3_-_49066865 NM_000884	-31878	-	BC009236 BC015567 BC012840 J04208 BC006124 TSC_hg19_v1_chr3_-_49066832 AK293397	-31918	-	TSC_hg19_v1_chr3_-_49066760 CU680406 DQ893403 DQ896721 AB527256	-31976	-	AK292536 TSC_hg19_v1_chr3_-_49130931	32173	-	TSC_hg19_v1_chr3_-_49131485 BC130340 BC130342 BC110855	32703	-	TSC_hg19_v1_chr3_-_49131496 AK074313	32747	-	NM_000884|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC009236|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC015567|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC012840|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##J04208|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##BC006124|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##AK293397|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##DQ893403|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##DQ896721|IMPDH2|3615|IMP (inosine 5'-monophosphate) dehydrogenase 2##AK292536|QRICH1|54870|glutamine-rich 1##BC130340|QRICH1|54870|glutamine-rich 1##BC130342|QRICH1|54870|glutamine-rich 1##BC110855|QRICH1|54870|glutamine-rich 1##AK074313|QRICH1|54870|glutamine-rich 1	0.0	0.0	
chr4	41085685	41085833	reg1018836.p1	3.900	+	BC088372 TSC_hg19_v1_chr4_-_40936716	-149081	-	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	-226584	-	BC042401 NM_024677 BC036568 AK024063	-333813	+	TSC_hg19_v1_chr4_-_41216560 BC027946 AK304247 AK226179 NM_001166050 NM_004307 NM_173075	130810	-	TSC_hg19_v1_chr4_+_41258897 NM_004181	173137	+	TSC_hg19_v1_chr4_+_41258913 BC000332 BC018838	173159	+	BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##BC027946|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK304247|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK226179|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166050|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004307|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_173075|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004181|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC000332|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)##BC018838|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	1.793177	0.0	denovo_WM_7:-32:0.424	denovo_WM_7:-33:0.282	denovo_WM_7:-47:0.431	denovo_WM_7:-48:0.247	denovo_WM_7:-49:0.218
chr9	98821793	98821877	reg1014437.p1	3.900	+	TSC_hg19_v1_chr9_-_98638262 AF194971 AL389954	-183512	-	NM_001010895 TSC_hg19_v1_chr9_+_98637942 AK129624 AK308409 AL389953	-183894	+	TSC_hg19_v1_chr9_-_98637839 AK092137 AX747374	-183982	-	BT019371 CR541894 CU689848 DQ891812 DQ894995 BC034281 NM_000197 U05659	242574	-	TSC_hg19_v1_chr9_-_99145966 HQ258608 AB106537 AB122077 AK307890 BC100278	324096	-	NM_007001 TSC_hg19_v1_chr9_-_99145994 BC113579	324185	-	AF194971|LINC00476|100128782|long intergenic non-protein coding RNA 476##AL389954|LINC00476|100128782|long intergenic non-protein coding RNA 476##NM_001010895|C9orf102|375748|chromosome 9 open reading frame 102##AK308409|C9orf102|375748|chromosome 9 open reading frame 102##AL389953|C9orf102|375748|chromosome 9 open reading frame 102##AK092137|LINC00476|100128782|long intergenic non-protein coding RNA 476##BT019371|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##CR541894|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##DQ891812|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##DQ894995|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##BC034281|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##NM_000197|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##U05659|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##HQ258608|SLC35D2|11046|solute carrier family 35, member D2##AB106537|SLC35D2|11046|solute carrier family 35, member D2##AB122077|SLC35D2|11046|solute carrier family 35, member D2##AK307890|SLC35D2|11046|solute carrier family 35, member D2##BC100278|SLC35D2|11046|solute carrier family 35, member D2##NM_007001|SLC35D2|11046|solute carrier family 35, member D2##BC113579|SLC35D2|11046|solute carrier family 35, member D2	0.0	0.0	
chr1	168996749	168996883	reg1013637.p2	3.899	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	-298387	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	-451024	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-483599	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	79153	+	TSC_hg19_v1_chr1_-_169337033 AB209049 BC006983 AK290701 AF153191 AK094513 AK301917 NM_013330 NM_197972	340276	-	NM_003666 AF288161 U79751 AK223533	340407	+	DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AB209049|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##BC006983|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK290701|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AF153191|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK094513|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK301917|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_013330|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_197972|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_003666|BLZF1|8548|basic leucine zipper nuclear factor 1##AF288161|BLZF1|8548|basic leucine zipper nuclear factor 1##U79751|BLZF1|8548|basic leucine zipper nuclear factor 1##AK223533|BLZF1|8548|basic leucine zipper nuclear factor 1	0.0	0.0	
chr15	38917155	38917293	reg1013567.p2	3.899	+	EU832766 GQ129309 AY634315 AY858556 AY954625 AY966005 AF106071 BC109296 BC109297 BC032849 BC067298 AF081195 TSC_hg19_v1_chr15_-_38856997 AK314091 NM_001128602 NM_005739	-60293	-	TSC_hg19_v1_chr15_+_38746352 NM_001042429 NM_173611 AK095745 BC093898	-170879	+	TSC_hg19_v1_chr15_+_38545029 NM_152594 AY299089 BC018015	-372202	+	AK093014 AX747856 BC119016 BC119810 NM_207444	71574	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	625701	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	956105	+	EU832766|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##GQ129309|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY634315|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY858556|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY954625|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AY966005|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF106071|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109296|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC109297|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC032849|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##BC067298|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AF081195|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##AK314091|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001128602|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_005739|RASGRP1|10125|RAS guanyl releasing protein 1 (calcium and DAG-regulated)##NM_001042429|FAM98B|283742|family with sequence similarity 98, member B##NM_173611|FAM98B|283742|family with sequence similarity 98, member B##AK095745|FAM98B|283742|family with sequence similarity 98, member B##BC093898|FAM98B|283742|family with sequence similarity 98, member B##NM_152594|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AY299089|SPRED1|161742|sprouty-related, EVH1 domain containing 1##BC018015|SPRED1|161742|sprouty-related, EVH1 domain containing 1##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1	0.928676	0.0	denovo_WM_7:38:0.686
chr19	1183900	1184075	reg1005105.p1	3.899	+	TSC_hg19_v1_chr19_-_1174268 AK300981 AK292407 NM_014963	-9708	-	TSC_hg19_v1_chr19_-_1174260 AB023180	-9728	-	TSC_hg19_v1_chr19_-_1174256 BC052799	-9759	-	TSC_hg19_v1_chr19_+_1205777 NM_000455 AF217978	21819	+	BC007981 AF035625 BC019334 AK314858 AB209553 EF644172 DQ893232 DQ896561 AB528360 CU675883 U63333 TSC_hg19_v1_chr19_+_1206921	22704	+	BC146278 BC148727 TSC_hg19_v1_chr19_+_1207211	23186	+	AK300981|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK292407|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_014963|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_000455|STK11|6794|serine/threonine kinase 11##AF217978|STK11|6794|serine/threonine kinase 11##BC007981|STK11|6794|serine/threonine kinase 11##AF035625|STK11|6794|serine/threonine kinase 11##BC019334|STK11|6794|serine/threonine kinase 11##AK314858|STK11|6794|serine/threonine kinase 11##AB209553|STK11|6794|serine/threonine kinase 11##EF644172|STK11|6794|serine/threonine kinase 11##DQ893232|STK11|6794|serine/threonine kinase 11##DQ896561|STK11|6794|serine/threonine kinase 11##U63333|STK11|6794|serine/threonine kinase 11##BC146278|EFNA2|1943|ephrin-A2##BC148727|EFNA2|1943|ephrin-A2	0.0	0.017032	
chr7	106251938	106252067	reg1012207.p1	3.899	+	BC072439 TSC_hg19_v1_chr7_-_105925430 BC106046 NM_005746	-326479	-	AB590725 CU687232 U02020 BC020691 TSC_hg19_v1_chr7_-_105925367 AK292851 AK304085	-326640	-	CU687506 EU831812 EU831889 BC061887 S72481 X68194 AK292230 TSC_hg19_v1_chr7_-_105753022 NM_006754	-498987	-	AK093350 AX748070 BC013906 TSC_hg19_v1_chr7_-_106301480 NM_175884	49501	-	TSC_hg19_v1_chr7_+_106505701 AK292684	253711	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	253772	+	BC072439|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC106046|NAMPT|10135|nicotinamide phosphoribosyltransferase##NM_005746|NAMPT|10135|nicotinamide phosphoribosyltransferase##U02020|NAMPT|10135|nicotinamide phosphoribosyltransferase##BC020691|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK292851|NAMPT|10135|nicotinamide phosphoribosyltransferase##AK304085|NAMPT|10135|nicotinamide phosphoribosyltransferase##EU831812|SYPL1|6856|synaptophysin-like 1##EU831889|SYPL1|6856|synaptophysin-like 1##BC061887|SYPL1|6856|synaptophysin-like 1##S72481|SYPL1|6856|synaptophysin-like 1##X68194|SYPL1|6856|synaptophysin-like 1##AK292230|SYPL1|6856|synaptophysin-like 1##NM_006754|SYPL1|6856|synaptophysin-like 1##AK093350|C7orf74|168455|chromosome 7 open reading frame 74##BC013906|C7orf74|168455|chromosome 7 open reading frame 74##NM_175884|C7orf74|168455|chromosome 7 open reading frame 74##AK292684|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide	0.0	0.0	
chr19	20747590	20747734	reg1012404.p1	3.898	+	AK126842 BC022411 TSC_hg19_v1_chr19_-_20607776 BC036006 BC016785 BC017970	-139894	-	TSC_hg19_v1_chr19_+_20277998 BC027608 BC008936 BC117268 NM_052852	-469626	+	TSC_hg19_v1_chr19_+_20188813 NM_007138 AK298173 M61870 BC137211	-558825	+	BC015765 TSC_hg19_v1_chr19_-_20748588 NM_001159293	923	-	BC150651 AK096221 CR749233 TSC_hg19_v1_chr19_-_20844378 BC007116 BX648764 AK131567 BC107803 NM_001076675 NM_145297	96700	-	BC067843 TSC_hg19_v1_chr19_+_20959109	211447	+	BC022411|ZNF826P|664701|zinc finger protein 826, pseudogene##BC036006|ZNF826P|664701|zinc finger protein 826, pseudogene##BC016785|ZNF826P|664701|zinc finger protein 826, pseudogene##BC017970|ZNF826P|664701|zinc finger protein 826, pseudogene##BC027608|ZNF486|90649|zinc finger protein 486##BC008936|ZNF486|90649|zinc finger protein 486##BC117268|ZNF486|90649|zinc finger protein 486##NM_052852|ZNF486|90649|zinc finger protein 486##NM_007138|ZNF90|7643|zinc finger protein 90##AK298173|ZNF90|7643|zinc finger protein 90##M61870|ZNF90|7643|zinc finger protein 90##BC137211|ZNF90|7643|zinc finger protein 90##BC015765|ZNF737|100129842|zinc finger protein 737##NM_001159293|ZNF737|100129842|zinc finger protein 737##AK096221|ZNF626|199777|zinc finger protein 626##CR749233|ZNF626|199777|zinc finger protein 626##BC007116|ZNF626|199777|zinc finger protein 626##BX648764|ZNF626|199777|zinc finger protein 626##BC107803|ZNF626|199777|zinc finger protein 626##NM_001076675|ZNF626|199777|zinc finger protein 626##NM_145297|ZNF626|199777|zinc finger protein 626	1.962332	0.0	denovo_WM_7:-30:0.781	denovo_WM_7:90:0.494	denovo_WM_7:91:0.494
chr3	196144568	196144699	reg1015068.p1	3.898	+	BC013113 AF192910 TSC_hg19_v1_chr3_-_196065258 AK310209 NM_001204897 NM_001204898 NM_138461	-79367	-	BC146985 BC146993 BC147021 BC171824 BC171870 TSC_hg19_v1_chr3_-_196065221	-79425	-	TSC_hg19_v1_chr3_-_196045112 BC015348 BC021177 NM_152773	-99520	-	AB018337 TSC_hg19_v1_chr3_-_196159295 BC047420	14650	-	TSC_hg19_v1_chr3_-_196159299 AK026451 AK129880 AK303630 AK308699 AK307899	14666	-	TSC_hg19_v1_chr3_-_196159304 NM_015562	14700	-	AF192910|TM4SF19|116211|transmembrane 4 L six family member 19##AK310209|TM4SF19|116211|transmembrane 4 L six family member 19##NM_001204897|TM4SF19|116211|transmembrane 4 L six family member 19##NM_001204898|TM4SF19|116211|transmembrane 4 L six family member 19##NM_138461|TM4SF19|116211|transmembrane 4 L six family member 19##BC146985|TM4SF19|116211|transmembrane 4 L six family member 19##BC146993|TM4SF19|116211|transmembrane 4 L six family member 19##BC147021|TM4SF19|116211|transmembrane 4 L six family member 19##BC171824|TM4SF19|116211|transmembrane 4 L six family member 19##BC171870|TM4SF19|116211|transmembrane 4 L six family member 19##BC015348|TCTEX1D2|255758|Tctex1 domain containing 2##BC021177|TCTEX1D2|255758|Tctex1 domain containing 2##NM_152773|TCTEX1D2|255758|Tctex1 domain containing 2##AB018337|UBXN7|26043|UBX domain protein 7##BC047420|UBXN7|26043|UBX domain protein 7##AK026451|UBXN7|26043|UBX domain protein 7##AK129880|UBXN7|26043|UBX domain protein 7##AK303630|UBXN7|26043|UBX domain protein 7##AK308699|UBXN7|26043|UBX domain protein 7##AK307899|UBXN7|26043|UBX domain protein 7##NM_015562|UBXN7|26043|UBX domain protein 7	1.992368	0.0	denovo_WM_7:-12:0.382	denovo_WM_7:-13:0.291	denovo_WM_7:-29:0.276	denovo_WM_7:-30:0.368
chr7	122214839	122215019	reg1010423.p2	3.898	+	AY726588 BC127714 BC127715 NM_001024613 NM_001160264 BC136684 BC144367 AK300742	-270340	-	AK225898 AF229180 TSC_hg19_v1_chr7_-_121784304 AK294326 NM_005763	-430640	-	TSC_hg19_v1_chr7_+_121513214 U88967	-701708	+	BC022038 AF447589 NM_139175 AK098524	124268	-	AK058116 AK098654 BC029264 NM_198085	128063	-	AY264289 TSC_hg19_v1_chr7_-_122526515 AF401638 BC054339 BC136601 BC144278 BC144279 AK098170 AK126518	311569	-	AY726588|FEZF1|389549|FEZ family zinc finger 1##BC127714|FEZF1|389549|FEZ family zinc finger 1##BC127715|FEZF1|389549|FEZ family zinc finger 1##NM_001024613|FEZF1|389549|FEZ family zinc finger 1##NM_001160264|FEZF1|389549|FEZ family zinc finger 1##BC136684|FEZF1|389549|FEZ family zinc finger 1##BC144367|FEZF1|389549|FEZ family zinc finger 1##AK300742|FEZF1|389549|FEZ family zinc finger 1##AK225898|AASS|10157|aminoadipate-semialdehyde synthase##AF229180|AASS|10157|aminoadipate-semialdehyde synthase##AK294326|AASS|10157|aminoadipate-semialdehyde synthase##NM_005763|AASS|10157|aminoadipate-semialdehyde synthase##U88967|PTPRZ1|5803|protein tyrosine phosphatase, receptor-type, Z polypeptide 1##BC022038|RNF133|168433|ring finger protein 133##AF447589|RNF133|168433|ring finger protein 133##NM_139175|RNF133|168433|ring finger protein 133##AK098524|RNF133|168433|ring finger protein 133##AK058116|RNF148|378925|ring finger protein 148##AK098654|RNF148|378925|ring finger protein 148##BC029264|RNF148|378925|ring finger protein 148##NM_198085|RNF148|378925|ring finger protein 148##AY264289|CADPS2|93664|Ca++-dependent secretion activator 2##AF401638|CADPS2|93664|Ca++-dependent secretion activator 2##BC054339|CADPS2|93664|Ca++-dependent secretion activator 2##BC136601|CADPS2|93664|Ca++-dependent secretion activator 2##BC144278|CADPS2|93664|Ca++-dependent secretion activator 2##BC144279|CADPS2|93664|Ca++-dependent secretion activator 2##AK126518|CADPS2|93664|Ca++-dependent secretion activator 2	0.0	0.0	
chr9	44548578	44548680	reg1017201.p1	3.898	+	TSC_hg19_v1_chr9_+_43684876 NM_001201380	-863786	+	NM_001145196	-917900	-	AB462947 AM393131 BC146681 BC140809 BC171793 AL136793 NM_001012419 NM_001012421	-1415142	-	TSC_hg19_v1_chr9_+_45441926 BC006438	893297	+	BC040528 NM_001113541 NM_015667	20960980	-	CR627148 TSC_hg19_v1_chr9_+_66457301 BC039680	21908672	+	NM_001201380|CNTNAP3B|728577|contactin associated protein-like 3B##NM_001145196|FAM75A6|389730|family with sequence similarity 75, member A6##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_001012421|ANKRD20A2|441430|ankyrin repeat domain 20 family, member A2##BC006438|LOC100132167|100132167|uncharacterized LOC100132167##BC040528|FAM75A7|26165|family with sequence similarity 75, member A7##NM_001113541|FAM75A5|727905|family with sequence similarity 75, member A5##NM_015667|FAM75A7|26165|family with sequence similarity 75, member A7	0.991002	0.0	denovo_WM_7:-53:0.330	denovo_WM_7:-54:0.330	denovo_WM_7:-55:0.330
chr10	78936159	78936290	reg1016173.p1	3.897	+	AF267860 NM_032024	-1393706	+	TSC_hg19_v1_chr10_-_77161541 AK290311	-1774659	-	BC011625 AK225851 TSC_hg19_v1_chr10_-_77161523 BC007494 NM_032772	-1774743	-	AF118141 TSC_hg19_v1_chr10_-_79397246	461001	-	U11058 AB113575 AF025999 AB113382 AY040849 U11717 TSC_hg19_v1_chr10_-_79397382	461112	-	TSC_hg19_v1_chr10_-_79397394 AB524033 U23767	461182	-	AF267860|C10orf11|83938|chromosome 10 open reading frame 11##NM_032024|C10orf11|83938|chromosome 10 open reading frame 11##AK290311|ZNF503|84858|zinc finger protein 503##BC011625|ZNF503|84858|zinc finger protein 503##AK225851|ZNF503|84858|zinc finger protein 503##BC007494|ZNF503|84858|zinc finger protein 503##NM_032772|ZNF503|84858|zinc finger protein 503##AF118141|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11058|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113575|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AF025999|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB113382|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AY040849|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U11717|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##AB524033|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1##U23767|KCNMA1|3778|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	0.965992	0.0	denovo_WM_7:-2:0.747	denovo_WM_7:-3:0.219
chr15	41047407	41047541	reg1015908.p1	3.897	+	TSC_hg19_v1_chr15_-_41047453 AK001441 NM_018145 AK123192	-10	-	BC063844 TSC_hg19_v1_chr15_-_41047430 AK097286 AK092058	-41	-	TSC_hg19_v1_chr15_+_40987387 D14134 D13804	-60058	+	TSC_hg19_v1_chr15_+_41056274 AK223430 AK311872 NM_005258 BC112262 BC112264 BC143904 HQ258032	8834	+	NM_001130448 BC027487 AK291344	14743	+	TSC_hg19_v1_chr15_+_41099254 NM_001077268 AK122779 BC015738 AF445414	51868	+	AK001441|FAM82A2|55177|family with sequence similarity 82, member A2##NM_018145|FAM82A2|55177|family with sequence similarity 82, member A2##AK123192|FAM82A2|55177|family with sequence similarity 82, member A2##BC063844|FAM82A2|55177|family with sequence similarity 82, member A2##AK097286|FAM82A2|55177|family with sequence similarity 82, member A2##AK092058|FAM82A2|55177|family with sequence similarity 82, member A2##D14134|RAD51|5888|RAD51 homolog (S. cerevisiae)##D13804|RAD51|5888|RAD51 homolog (S. cerevisiae)##AK223430|GCHFR|2644|GTP cyclohydrolase I feedback regulator##AK311872|GCHFR|2644|GTP cyclohydrolase I feedback regulator##NM_005258|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112262|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC112264|GCHFR|2644|GTP cyclohydrolase I feedback regulator##BC143904|GCHFR|2644|GTP cyclohydrolase I feedback regulator##HQ258032|GCHFR|2644|GTP cyclohydrolase I feedback regulator##NM_001130448|C15orf62|643338|chromosome 15 open reading frame 62##BC027487|C15orf62|643338|chromosome 15 open reading frame 62##AK291344|C15orf62|643338|chromosome 15 open reading frame 62##NM_001077268|ZFYVE19|84936|zinc finger, FYVE domain containing 19##AK122779|ZFYVE19|84936|zinc finger, FYVE domain containing 19##BC015738|ZFYVE19|84936|zinc finger, FYVE domain containing 19##AF445414|ZFYVE19|84936|zinc finger, FYVE domain containing 19	0.0	0.0	
chr16	3015772	3015872	reg1012809.p1	3.897	+	BC009383 NM_001253725 NM_001253726 NM_024507 NM_172229 AK075033 AK301953 AK027669 BC003533 AK223422 AB086355 AB086356 AB086357 AB086405 DQ896447	-1454	+	TSC_hg19_v1_chr16_+_2961994 AB046772	-53825	+	TSC_hg19_v1_chr16_+_2961983 BC028572 NM_020912 NM_032296	-53858	+	NM_152341 TSC_hg19_v1_chr16_+_3019348	3524	+	TSC_hg19_v1_chr16_+_3019556 AK291373 AK054564 AK092173 AX747391 BC033703 AL832527 EU831903 EU831998 AY424282	3748	+	AK098452 TSC_hg19_v1_chr16_-_3030418 AK301926 AK303005 AK097642	14585	-	BC009383|KREMEN2|79412|kringle containing transmembrane protein 2##NM_001253725|KREMEN2|79412|kringle containing transmembrane protein 2##NM_001253726|KREMEN2|79412|kringle containing transmembrane protein 2##NM_024507|KREMEN2|79412|kringle containing transmembrane protein 2##NM_172229|KREMEN2|79412|kringle containing transmembrane protein 2##AK075033|KREMEN2|79412|kringle containing transmembrane protein 2##AK301953|KREMEN2|79412|kringle containing transmembrane protein 2##AK027669|KREMEN2|79412|kringle containing transmembrane protein 2##BC003533|KREMEN2|79412|kringle containing transmembrane protein 2##AK223422|KREMEN2|79412|kringle containing transmembrane protein 2##AB086355|KREMEN2|79412|kringle containing transmembrane protein 2##AB086356|KREMEN2|79412|kringle containing transmembrane protein 2##AB086357|KREMEN2|79412|kringle containing transmembrane protein 2##AB086405|KREMEN2|79412|kringle containing transmembrane protein 2##DQ896447|KREMEN2|79412|kringle containing transmembrane protein 2##AB046772|FLYWCH1|84256|FLYWCH-type zinc finger 1##BC028572|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_020912|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_032296|FLYWCH1|84256|FLYWCH-type zinc finger 1##NM_152341|PAQR4|124222|progestin and adipoQ receptor family member IV##AK291373|PAQR4|124222|progestin and adipoQ receptor family member IV##AK054564|PAQR4|124222|progestin and adipoQ receptor family member IV##AK092173|PAQR4|124222|progestin and adipoQ receptor family member IV##BC033703|PAQR4|124222|progestin and adipoQ receptor family member IV##AL832527|PAQR4|124222|progestin and adipoQ receptor family member IV##EU831903|PAQR4|124222|progestin and adipoQ receptor family member IV##EU831998|PAQR4|124222|progestin and adipoQ receptor family member IV##AY424282|PAQR4|124222|progestin and adipoQ receptor family member IV##AK098452|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK301926|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK303005|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1##AK097642|PKMYT1|9088|protein kinase, membrane associated tyrosine/threonine 1	0.998858	0.0	denovo_WM_7:-41:0.314	denovo_WM_7:-42:0.314	denovo_WM_7:-43:0.314
chr2	177691264	177691368	reg1016074.p1	3.897	+	BC013438 TSC_hg19_v1_chr2_-_177502718	-188628	-	NM_006554 TSC_hg19_v1_chr2_+_177134169 BC067831 AF053551 AK001287 AK289359 AK315918 BC088359 BC017271 AK303564 CU688356	-557077	+	AF241528 NM_024501 TSC_hg19_v1_chr2_+_177053395 AK314120 BC014477 BC028190 DQ892237 DQ895437 AB464583	-637900	+	NM_194247 TSC_hg19_v1_chr2_+_178077481 AK293125 AK316434 AK304687 AK303208 BX647217 BC112027 BC113470 BC064494 BC012090 AY363225	386158	+	AK311688 NM_001145412 NM_001145413	437255	-	S74017 HM446346 AB463936 CU679962 EU446639 EU831991 EU832084 TSC_hg19_v1_chr2_-_178129456 BC011558	438060	-	BC013438|LOC375295|375295|uncharacterized LOC375295##NM_006554|MTX2|10651|metaxin 2##BC067831|MTX2|10651|metaxin 2##AF053551|MTX2|10651|metaxin 2##AK001287|MTX2|10651|metaxin 2##AK289359|MTX2|10651|metaxin 2##AK315918|MTX2|10651|metaxin 2##BC088359|MTX2|10651|metaxin 2##BC017271|MTX2|10651|metaxin 2##AK303564|MTX2|10651|metaxin 2##AF241528|HOXD1|3231|homeobox D1##NM_024501|HOXD1|3231|homeobox D1##AK314120|HOXD1|3231|homeobox D1##BC014477|HOXD1|3231|homeobox D1##BC028190|HOXD1|3231|homeobox D1##DQ892237|HOXD1|3231|homeobox D1##DQ895437|HOXD1|3231|homeobox D1##NM_194247|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK293125|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK316434|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK304687|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK303208|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BX647217|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC112027|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC113470|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##BC064494|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AY363225|HNRNPA3|220988|heterogeneous nuclear ribonucleoprotein A3##AK311688|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145412|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##NM_001145413|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##S74017|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##HM446346|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU446639|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU831991|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##EU832084|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2##BC011558|NFE2L2|4780|nuclear factor (erythroid-derived 2)-like 2	0.013708	0.0	
chr8	8232999	8233116	reg1016930.p1	3.897	+	TSC_hg19_v1_chr8_-_8175862 AF075060	-57169	-	TSC_hg19_v1_chr8_+_8086111 BC035792 AK307256 AK304567	-146915	+	AK292586 NM_001193630	-449199	+	AK122582 NM_001080826	6165	-	AK123547 NM_194284 TSC_hg19_v1_chr8_+_8559701 BC125148 BC125149	326641	+	TSC_hg19_v1_chr8_-_8751060 NM_004225	517881	-	AF075060|SGK223|157285|homolog of rat pragma of Rnd2##BC035792|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK307256|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK304567|FLJ10661|286042|family with sequence similarity 86, member A pseudogene##AK292586|LOC100132396|100132396|zinc finger protein 705D-like##NM_001193630|LOC100132396|100132396|zinc finger protein 705D-like##AK122582|SGK223|157285|homolog of rat pragma of Rnd2##NM_001080826|SGK223|157285|homolog of rat pragma of Rnd2##AK123547|CLDN23|137075|claudin 23##NM_194284|CLDN23|137075|claudin 23##BC125148|CLDN23|137075|claudin 23##BC125149|CLDN23|137075|claudin 23##NM_004225|MFHAS1|9258|malignant fibrous histiocytoma amplified sequence 1	0.0	0.0	
chr15	33015578	33015713	reg1001901.p1	3.896	+	TSC_hg19_v1_chr15_-_33011125 AK093166 AX747968	-4479	-	AK095741 TSC_hg19_v1_chr15_+_33010204 AK095890 AK095972 AK312265 NM_001191322 NM_001191323 NM_013372 AY232290 AF110137 BC093778 BC101611	-5388	+	NM_001144757 NM_003020 AK314965 BC093053 BC005349 Y00757	-81731	+	NM_001103184 BC101971 BC103692 BC107593 TSC_hg19_v1_chr15_-_33360376 AL833157	344590	-	AB001025 TSC_hg19_v1_chr15_+_33603167 AJ001515 NM_001036 NM_001243996	587524	+	TSC_hg19_v1_chr15_-_34212524 BC037796	1196913	-	AK095741|GREM1|26585|gremlin 1##AK095890|GREM1|26585|gremlin 1##AK095972|GREM1|26585|gremlin 1##AK312265|GREM1|26585|gremlin 1##NM_001191322|GREM1|26585|gremlin 1##NM_001191323|GREM1|26585|gremlin 1##NM_013372|GREM1|26585|gremlin 1##AY232290|GREM1|26585|gremlin 1##AF110137|GREM1|26585|gremlin 1##BC093778|GREM1|26585|gremlin 1##BC101611|GREM1|26585|gremlin 1##NM_001144757|SCG5|6447|secretogranin V (7B2 protein)##NM_003020|SCG5|6447|secretogranin V (7B2 protein)##AK314965|SCG5|6447|secretogranin V (7B2 protein)##BC093053|SCG5|6447|secretogranin V (7B2 protein)##BC005349|SCG5|6447|secretogranin V (7B2 protein)##Y00757|SCG5|6447|secretogranin V (7B2 protein)##NM_001103184|FMN1|342184|formin 1##BC103692|FMN1|342184|formin 1##BC107593|FMN1|342184|formin 1##AL833157|FMN1|342184|formin 1##AB001025|RYR3|6263|ryanodine receptor 3##AJ001515|RYR3|6263|ryanodine receptor 3##NM_001036|RYR3|6263|ryanodine receptor 3##NM_001243996|RYR3|6263|ryanodine receptor 3	0.0	0.0	
chr22	42443020	42443179	reg1001428.p1	3.896	+	AK128138 NM_152613 TSC_hg19_v1_chr22_+_42394808 AK129656 AK296138 BC022546 BC022549 BC038789 AK310980 CR456400 AB463345 CU012958 CU013246	-48324	+	TSC_hg19_v1_chr22_+_42372810 NM_019106 NM_145733 AK290037 AK299919 AL833942 BC111779 CR456572 AF285107 AF285108 AF285109	-70191	+	AB528101 CR457392 CU012957 CU013245 BC000705 AL160131 TSC_hg19_v1_chr22_-_42343157 BC007495 CR456399 NM_001002876 NM_024053 AK123479	-99976	-	AB528190 CU013127 CU013415 DQ891874 DQ895062 CR456527 M38083 BC000095 TSC_hg19_v1_chr22_-_42466570	23336	-	TSC_hg19_v1_chr22_-_42466632 M29276	23530	-	M62783 TSC_hg19_v1_chr22_-_42466814	23695	-	AK128138|WBP2NL|164684|WBP2 N-terminal like##NM_152613|WBP2NL|164684|WBP2 N-terminal like##AK129656|WBP2NL|164684|WBP2 N-terminal like##AK296138|WBP2NL|164684|WBP2 N-terminal like##BC022546|WBP2NL|164684|WBP2 N-terminal like##BC022549|WBP2NL|164684|WBP2 N-terminal like##CR456400|WBP2NL|164684|WBP2 N-terminal like##NM_019106|SEPT3|55964|septin 3##NM_145733|SEPT3|55964|septin 3##AK290037|SEPT3|55964|septin 3##AK299919|SEPT3|55964|septin 3##AL833942|SEPT3|55964|septin 3##BC111779|SEPT3|55964|septin 3##CR456572|SEPT3|55964|septin 3##AF285107|SEPT3|55964|septin 3##AF285108|SEPT3|55964|septin 3##AF285109|SEPT3|55964|septin 3##CR457392|CENPM|79019|centromere protein M##BC000705|CENPM|79019|centromere protein M##AL160131|CENPM|79019|centromere protein M##BC007495|CENPM|79019|centromere protein M##CR456399|CENPM|79019|centromere protein M##NM_001002876|CENPM|79019|centromere protein M##NM_024053|CENPM|79019|centromere protein M##AK123479|CENPM|79019|centromere protein M##CU013127|NAGA|4668|N-acetylgalactosaminidase, alpha-##CU013415|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ891874|NAGA|4668|N-acetylgalactosaminidase, alpha-##DQ895062|NAGA|4668|N-acetylgalactosaminidase, alpha-##CR456527|NAGA|4668|N-acetylgalactosaminidase, alpha-##M38083|NAGA|4668|N-acetylgalactosaminidase, alpha-##BC000095|NAGA|4668|N-acetylgalactosaminidase, alpha-##M29276|NAGA|4668|N-acetylgalactosaminidase, alpha-##M62783|NAGA|4668|N-acetylgalactosaminidase, alpha-	0.0	0.0	
chr3	31959920	31959995	reg1000872.p2	3.896	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	-385475	+	TSC_hg19_v1_chr3_+_31574468 AK074587	-385508	+	TSC_hg19_v1_chr3_+_31574119 AK311488	-385827	+	TSC_hg19_v1_chr3_-_32022751 BC003168 AF346291 AK304067 AK097503	62812	-	AK294003 NM_001137674	63308	+	AF392451 NM_001174060 NM_017784	63332	-	AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##BC003168|OSBPL10|114884|oxysterol binding protein-like 10##AF346291|OSBPL10|114884|oxysterol binding protein-like 10##AK304067|OSBPL10|114884|oxysterol binding protein-like 10##AK294003|ZNF860|344787|zinc finger protein 860##NM_001137674|ZNF860|344787|zinc finger protein 860##AF392451|OSBPL10|114884|oxysterol binding protein-like 10##NM_001174060|OSBPL10|114884|oxysterol binding protein-like 10##NM_017784|OSBPL10|114884|oxysterol binding protein-like 10	0.0	0.0	
chr5	102093666	102093756	reg1014172.p1	3.896	+	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	-259078	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	-461603	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-1854783	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	107819	+	M37721 TSC_hg19_v1_chr5_+_102201730 AK296521 AK290158 S75037 S75038 AB527419 AB095007 BT007419	108095	+	BC151135 BC157835 BC015325 CR627424 AK295796 AK225572 AK000132 NM_017676 TSC_hg19_v1_chr5_-_102455843	362102	-	DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase##M37721|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK296521|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK290158|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75037|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75038|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AB095007|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BT007419|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BC151135|GIN1|54826|gypsy retrotransposon integrase 1##BC157835|GIN1|54826|gypsy retrotransposon integrase 1##BC015325|GIN1|54826|gypsy retrotransposon integrase 1##CR627424|GIN1|54826|gypsy retrotransposon integrase 1##AK295796|GIN1|54826|gypsy retrotransposon integrase 1##AK225572|GIN1|54826|gypsy retrotransposon integrase 1##AK000132|GIN1|54826|gypsy retrotransposon integrase 1##NM_017676|GIN1|54826|gypsy retrotransposon integrase 1	2.943572	0.0	denovo_WM_7:42:0.237	denovo_WM_7:43:0.237	denovo_WM_7:44:0.237	denovo_WM_7:45:0.237	denovo_WM_7:74:0.271	denovo_WM_7:75:0.227	denovo_WM_7:93:0.222	denovo_WM_7:94:0.266
chr9	4740069	4740226	reg1011954.p1	3.896	+	NM_001199856 AK124824	-13910	-	TSC_hg19_v1_chr9_+_4679596 AK000497 NM_017913 AK000646 AK225510 BC014133 CU680796	-60486	+	AK295831 NM_001039395	-73478	-	TSC_hg19_v1_chr9_-_4741050 AF086913 AF100785	911	-	TSC_hg19_v1_chr9_-_4741203 AB021870 DQ891660 DQ894847 AK027534 BC013771 NM_001199854 AK001951 AK001553 AK298200	1026	-	TSC_hg19_v1_chr9_-_4741309 NM_001199852 NM_016282	1206	-	NM_001199856|AK3|50808|adenylate kinase 3##AK124824|AK3|50808|adenylate kinase 3##AK000497|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##NM_017913|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##AK000646|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##AK225510|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##BC014133|CDC37L1|55664|cell division cycle 37 homolog (S. cerevisiae)-like 1##AK295831|C9orf68|55064|chromosome 9 open reading frame 68##NM_001039395|C9orf68|55064|chromosome 9 open reading frame 68##AF086913|AK3|50808|adenylate kinase 3##AF100785|AK3|50808|adenylate kinase 3##AB021870|AK3|50808|adenylate kinase 3##DQ891660|AK3|50808|adenylate kinase 3##DQ894847|AK3|50808|adenylate kinase 3##AK027534|AK3|50808|adenylate kinase 3##BC013771|AK3|50808|adenylate kinase 3##NM_001199854|AK3|50808|adenylate kinase 3##AK001951|AK3|50808|adenylate kinase 3##AK001553|AK3|50808|adenylate kinase 3##AK298200|AK3|50808|adenylate kinase 3##NM_001199852|AK3|50808|adenylate kinase 3##NM_016282|AK3|50808|adenylate kinase 3	1.493961	0.0	denovo_WM_7:-57:0.269	denovo_WM_7:-76:0.310	denovo_WM_7:-77:0.310	denovo_WM_7:-78:0.310
chr9	72170885	72171010	reg1013975.p1	3.896	+	AK126127 NM_004816	-226707	+	NM_001127608	-231460	+	NM_001170415 AK302483 AK295034 NM_001170416	-350946	+	TSC_hg19_v1_chr9_-_72287241 AF029106 AF047347 NM_001163	116257	-	TSC_hg19_v1_chr9_-_72374870 AL832683 BC053622 NM_001099666	203949	-	NM_001010940 BC150564 BC136709 BC144373 BC144374 BC144375	264789	+	AK126127|FAM189A2|9413|family with sequence similarity 189, member A2##NM_004816|FAM189A2|9413|family with sequence similarity 189, member A2##NM_001127608|FAM189A2|9413|family with sequence similarity 189, member A2##NM_001170415|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK302483|TJP2|9414|tight junction protein 2 (zona occludens 2)##AK295034|TJP2|9414|tight junction protein 2 (zona occludens 2)##NM_001170416|TJP2|9414|tight junction protein 2 (zona occludens 2)##AF029106|APBA1|320|amyloid beta (A4) precursor protein-binding, family A, member 1##AF047347|APBA1|320|amyloid beta (A4) precursor protein-binding, family A, member 1##NM_001163|APBA1|320|amyloid beta (A4) precursor protein-binding, family A, member 1##AL832683|PTAR1|375743|protein prenyltransferase alpha subunit repeat containing 1##BC053622|PTAR1|375743|protein prenyltransferase alpha subunit repeat containing 1##NM_001099666|PTAR1|375743|protein prenyltransferase alpha subunit repeat containing 1##NM_001010940|C9orf135|138255|chromosome 9 open reading frame 135##BC150564|C9orf135|138255|chromosome 9 open reading frame 135##BC136709|C9orf135|138255|chromosome 9 open reading frame 135##BC144373|C9orf135|138255|chromosome 9 open reading frame 135##BC144374|C9orf135|138255|chromosome 9 open reading frame 135##BC144375|C9orf135|138255|chromosome 9 open reading frame 135	0.98385	0.0	denovo_WM_7:-5:0.787
chrX	115074777	115074925	reg1000039.p2	3.896	+	NM_001136025 NM_001172335 AK298530 AK300575 BC039049	-246983	+	TSC_hg19_v1_chrX_-_114797027 AK127380	-277809	-	TSC_hg19_v1_chrX_+_114795522 AK298501 AK311397 AK312391 M34427 AK222801 AK311211 AK294509	-279245	+	BC003645 TSC_hg19_v1_chrX_-_115085443	10588	-	AK313927 NM_000686 X87723 U16957	227144	+	AK313390 NM_007231 TSC_hg19_v1_chrX_+_115567773 AK304243 AF151978	492916	+	NM_001136025|PLS3|5358|plastin 3##NM_001172335|PLS3|5358|plastin 3##AK298530|PLS3|5358|plastin 3##AK300575|PLS3|5358|plastin 3##BC039049|PLS3|5358|plastin 3##AK298501|PLS3|5358|plastin 3##AK311397|PLS3|5358|plastin 3##AK312391|PLS3|5358|plastin 3##M34427|PLS3|5358|plastin 3##AK222801|PLS3|5358|plastin 3##AK311211|PLS3|5358|plastin 3##AK294509|PLS3|5358|plastin 3##BC003645|LOC642776|642776|uncharacterized LOC642776##AK313927|AGTR2|186|angiotensin II receptor, type 2##NM_000686|AGTR2|186|angiotensin II receptor, type 2##X87723|AGTR2|186|angiotensin II receptor, type 2##U16957|AGTR2|186|angiotensin II receptor, type 2##AK313390|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##NM_007231|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AK304243|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14##AF151978|SLC6A14|11254|solute carrier family 6 (amino acid transporter), member 14	0.0	0.0	
chrX	12461977	12462153	reg1015145.p1	3.896	+	AB002314 NM_014728 AK289694	-305475	+	NM_006800 AK025642	-684318	+	NM_001193270 AK300814	-685348	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	347432	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	347503	+	AK313858 BC033651 NM_016562 AF240467 AF245702	423133	+	AB002314|FRMPD4|9758|FERM and PDZ domain containing 4##NM_014728|FRMPD4|9758|FERM and PDZ domain containing 4##AK289694|FRMPD4|9758|FERM and PDZ domain containing 4##NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313858|TLR7|51284|toll-like receptor 7##BC033651|TLR7|51284|toll-like receptor 7##NM_016562|TLR7|51284|toll-like receptor 7##AF240467|TLR7|51284|toll-like receptor 7##AF245702|TLR7|51284|toll-like receptor 7	0.0	0.0	
chr10	105156916	105157049	reg1013523.p2	3.895	+	TSC_hg19_v1_chr10_+_105156433 BC111040 D80007	-538	+	TSC_hg19_v1_chr10_+_105156421 BC064486 BC080560	-564	+	AK293772 AK294971 TSC_hg19_v1_chr10_+_105156399 AK307418 BC049838 NM_014976	-585	+	AF131810 TSC_hg19_v1_chr10_-_105212068 BC000039	55082	-	TSC_hg19_v1_chr10_-_105212166 AK022195 NM_015916	55181	-	BC036193 BC036208 NM_001001412	61663	-	BC111040|PDCD11|22984|programmed cell death 11##D80007|PDCD11|22984|programmed cell death 11##BC064486|PDCD11|22984|programmed cell death 11##BC080560|PDCD11|22984|programmed cell death 11##AK294971|PDCD11|22984|programmed cell death 11##AK307418|PDCD11|22984|programmed cell death 11##BC049838|PDCD11|22984|programmed cell death 11##NM_014976|PDCD11|22984|programmed cell death 11##AF131810|CALHM2|51063|calcium homeostasis modulator 2##BC000039|CALHM2|51063|calcium homeostasis modulator 2##AK022195|CALHM2|51063|calcium homeostasis modulator 2##NM_015916|CALHM2|51063|calcium homeostasis modulator 2##BC036193|CALHM1|255022|calcium homeostasis modulator 1##BC036208|CALHM1|255022|calcium homeostasis modulator 1##NM_001001412|CALHM1|255022|calcium homeostasis modulator 1	0.995138	0.0	
chr12	104851602	104851761	reg1010169.p2	3.895	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-594	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-873	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-910	+	TSC_hg19_v1_chr12_+_105153261 AF131762	301596	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	470582	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	528409	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	1.285692	0.0	denovo_WM_7:-88:0.837
chr14	22198170	22198273	reg1020051.p1	3.895	+	AB463964 NM_001001912 AY726598	-64899	+	NM_001005466 AB529274 BC137371 BC137382	-95175	-	AB528817 NM_001005465	-159347	-	X58763 TSC_hg19_v1_chr14_+_22989364	791128	+	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	859865	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	859913	-	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##NM_001005465|OR10G3|26533|olfactory receptor, family 10, subfamily G, member 3##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1	0.0	0.0	
chr15	77269277	77269355	reg1001877.p2	3.895	+	TSC_hg19_v1_chr15_+_77224095 NM_002902 AK313833 X78669 BC004892 BT009790 CU678788	-45244	+	AB040887 TSC_hg19_v1_chr15_-_77197781 AK056095	-71545	-	TSC_hg19_v1_chr15_-_77197682 BC070197 BC107415 AK056515	-71652	-	TSC_hg19_v1_chr15_+_77287465 AK309856 NM_003978 AK310126 BC008602	18174	+	AK304052 U94778 AK316220 TSC_hg19_v1_chr15_+_77287720 AK298733	18390	+	TSC_hg19_v1_chr15_+_77287743 AK310072 AB451310 AB451440 AF038602 AF038603 DQ891779 DQ894963 AB528365	18511	+	NM_002902|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AK313833|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##X78669|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BC004892|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##BT009790|RCN2|5955|reticulocalbin 2, EF-hand calcium binding domain##AB040887|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056095|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC070197|SCAPER|49855|S-phase cyclin A-associated protein in the ER##BC107415|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK056515|SCAPER|49855|S-phase cyclin A-associated protein in the ER##AK309856|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##NM_003978|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310126|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##BC008602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK304052|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##U94778|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK316220|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK298733|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AK310072|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451310|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AB451440|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038602|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##AF038603|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ891779|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1##DQ894963|PSTPIP1|9051|proline-serine-threonine phosphatase interacting protein 1	0.0	0.0	
chr16	70464790	70464862	reg1015482.p1	3.895	+	TSC_hg19_v1_chr16_+_70380805 AK001988 CR749227 BC025771 AK125701 AK310804 AK223262 AK310604 AL832970 BC005162 BC006544 NM_018332 BC137496 BC137497 AK299539 CU675025	-83998	+	AK027378 AL136639 TSC_hg19_v1_chr16_+_70333096 BC003626 BC010008 AF136175 AF183422 EU831645 EU831729 AB527308 CU678542 AJ237946 CR457215 CR533509	-131678	+	TSC_hg19_v1_chr16_+_70333090 AK296868 NM_001014449 NM_001014451 NM_007242 AK316346 AK223115	-131750	+	TSC_hg19_v1_chr16_-_70473007 NM_006927	8155	-	AJ441184 AK056456 AK092025 AK128387 AK293794 AK315590 AX747320 NM_145059 AK074168 BC032542	23673	+	AK096727 TSC_hg19_v1_chr16_+_70502845 BC015955	38014	+	AK001988|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##CR749227|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC025771|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK125701|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310804|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK223262|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK310604|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AL832970|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC005162|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC006544|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##NM_018332|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137496|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##BC137497|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK299539|DDX19A|55308|DEAD (Asp-Glu-Ala-As) box polypeptide 19A##AK027378|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AL136639|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC003626|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##BC010008|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831645|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##EU831729|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AJ237946|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR457215|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##CR533509|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK296868|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014449|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_001014451|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_007242|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK316346|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##AK223115|DDX19B|11269|DEAD (Asp-Glu-Ala-As) box polypeptide 19B##NM_006927|ST3GAL2|6483|ST3 beta-galactoside alpha-2,3-sialyltransferase 2##AJ441184|FUK|197258|fucokinase##AK056456|FUK|197258|fucokinase##AK092025|FUK|197258|fucokinase##AK128387|FUK|197258|fucokinase##AK293794|FUK|197258|fucokinase##AK315590|FUK|197258|fucokinase##NM_145059|FUK|197258|fucokinase##AK074168|FUK|197258|fucokinase##BC032542|FUK|197258|fucokinase##AK096727|FUK|197258|fucokinase	0.0	0.0	
chr19	48021318	48021498	reg1011038.p1	3.895	+	TSC_hg19_v1_chr19_-_48018321 BC028234 AK098401 NM_003827	-2993	-	BC007432 TSC_hg19_v1_chr19_-_48018290 AK292244 AK310114 AY927608 BC001165 AY927609 BC091511	-3112	-	TSC_hg19_v1_chr19_-_48018275 BT019568 U39412 AK308633 AK310185	-3189	-	NM_001101419	37704	-	TSC_hg19_v1_chr19_+_48111441 BC032065 NM_015711	90036	+	NM_014601 TSC_hg19_v1_chr19_+_48216678 AK315548 AK074701 AK097126 AK097228 AK296907 AK298067 BC014445	195242	+	BC028234|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK098401|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_003827|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC007432|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK292244|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310114|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC001165|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AY927609|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BC091511|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##BT019568|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##U39412|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK308633|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##AK310185|NAPA|8775|N-ethylmaleimide-sensitive factor attachment protein, alpha##NM_001101419|ZNF541|84215|zinc finger protein 541##BC032065|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_015711|GLTSCR1|29998|glioma tumor suppressor candidate region gene 1##NM_014601|EHD2|30846|EH-domain containing 2##AK315548|EHD2|30846|EH-domain containing 2##AK074701|EHD2|30846|EH-domain containing 2##AK097126|EHD2|30846|EH-domain containing 2##AK097228|EHD2|30846|EH-domain containing 2##AK296907|EHD2|30846|EH-domain containing 2##AK298067|EHD2|30846|EH-domain containing 2##BC014445|EHD2|30846|EH-domain containing 2	0.990924	0.0	denovo_WM_7:16:0.978
chr2	155393405	155393573	reg1010360.p1	3.895	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-665045	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1058238	-	BC070140 TSC_hg19_v1_chr2_+_153575135 AF530059	-1818345	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	161700	+	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1793201	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1795674	-	NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC070140|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AF530059|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2	0.0	0.0	
chr2	202000277	202000401	reg1013246.p1	3.895	+	NM_001202518 AK304585 AF041462	-2617	+	TSC_hg19_v1_chr2_+_201983419 AK289913 AK315208	-16867	+	AF015450 NM_001127183 AK308767 TSC_hg19_v1_chr2_+_201983395	-17008	+	AF041459 NM_001202515	4658	+	NM_001206524 NM_001206542 NM_001230 NM_032974 NM_032976 NM_032977	47281	+	TSC_hg19_v1_chr2_+_202047863 AK310746 U86214 AK304859 AK225475 AY690601 BC042844 U60519 AJ487678 AJ487679	47521	+	NM_001202518|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK304585|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041462|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK289913|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK315208|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF015450|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001127183|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AK308767|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##AF041459|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001202515|CFLAR|8837|CASP8 and FADD-like apoptosis regulator##NM_001206524|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001206542|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_001230|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032974|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032976|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##NM_032977|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK310746|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U86214|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK304859|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AK225475|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AY690601|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##BC042844|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##U60519|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487678|CASP10|843|caspase 10, apoptosis-related cysteine peptidase##AJ487679|CASP10|843|caspase 10, apoptosis-related cysteine peptidase	0.963781	0.0	denovo_WM_7:23:0.472	denovo_WM_7:24:0.492
chr7	99699870	99699970	reg1013031.p2	3.895	+	NM_005916 TSC_hg19_v1_chr7_-_99699517	-424	-	NM_004722 AF020796 Y08387 BC018705 AF155158 AK304489 BC012023 AK315782 CU676282 AK296651 AK293590 BX640759	-612	+	TSC_hg19_v1_chr7_-_99699034 D55716	-883	-	TSC_hg19_v1_chr7_-_99716928 AK097781	16986	-	TSC_hg19_v1_chr7_-_99716978 BC018115 L25444 AK315077 AK314428 CR627390 NM_005641 NM_139315	17055	-	AY359100 BC032339 NM_152755 AK075537 BC019903 DQ891593 EU176583	17393	+	NM_005916|MCM7|4176|minichromosome maintenance complex component 7##NM_004722|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AF020796|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##Y08387|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##BC018705|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AF155158|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK304489|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##BC012023|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK315782|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK296651|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##AK293590|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##BX640759|AP4M1|9179|adaptor-related protein complex 4, mu 1 subunit##D55716|MCM7|4176|minichromosome maintenance complex component 7##AK097781|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##BC018115|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##L25444|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##AK315077|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##AK314428|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##CR627390|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##NM_005641|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##NM_139315|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##AY359100|CNPY4|245812|canopy 4 homolog (zebrafish)##BC032339|CNPY4|245812|canopy 4 homolog (zebrafish)##NM_152755|CNPY4|245812|canopy 4 homolog (zebrafish)##AK075537|CNPY4|245812|canopy 4 homolog (zebrafish)##BC019903|CNPY4|245812|canopy 4 homolog (zebrafish)##DQ891593|CNPY4|245812|canopy 4 homolog (zebrafish)##EU176583|CNPY4|245812|canopy 4 homolog (zebrafish)	0.998431	0.0	denovo_WM_7:-61:0.455	denovo_WM_7:-62:0.376
chr9	863132	863312	reg1016656.p2	3.895	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-21459	+	TSC_hg19_v1_chr9_+_706828 BC038116 NM_153186	-156392	+	AB205112 TSC_hg19_v1_chr9_+_686677	-176556	+	NM_021240 BC113584 BC117245	113743	+	AF193873 TSC_hg19_v1_chr9_+_977425	114183	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	187122	+	AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC038116|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_153186|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2	1.720936	0.0	denovo_WM_7:105:0.229	denovo_WM_7:106:0.229	denovo_WM_7:107:0.229
chrX	109083915	109084035	reg1011655.p1	3.895	+	TSC_hg19_v1_chrX_-_108976528 AB061713 AK292070 AF030555 NM_004458 NM_022977	-107411	-	TSC_hg19_v1_chrX_-_108976464 Y12777 Y13058 AB061714 BC034959 AK307566 AK294915	-107496	-	DQ891287 DQ894471 DQ896649 DQ896656 DQ896659 DQ896664 EF535525 BC035330 AJ012743 NM_012282 AK223306 AK314923 DQ192294 TSC_hg19_v1_chrX_-_108868398	-215651	-	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	161895	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	162365	+	TSC_hg19_v1_chrX_+_109246360 BC085605	162380	+	AB061713|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK292070|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AF030555|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_004458|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##NM_022977|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y12777|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##Y13058|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AB061714|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##BC034959|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK307566|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##AK294915|ACSL4|2182|acyl-CoA synthetase long-chain family member 4##DQ891287|KCNE1L|23630|KCNE1-like##DQ894471|KCNE1L|23630|KCNE1-like##DQ896649|KCNE1L|23630|KCNE1-like##DQ896656|KCNE1L|23630|KCNE1-like##DQ896659|KCNE1L|23630|KCNE1-like##DQ896664|KCNE1L|23630|KCNE1-like##EF535525|KCNE1L|23630|KCNE1-like##BC035330|KCNE1L|23630|KCNE1-like##AJ012743|KCNE1L|23630|KCNE1-like##NM_012282|KCNE1L|23630|KCNE1-like##AK223306|KCNE1L|23630|KCNE1-like##AK314923|KCNE1L|23630|KCNE1-like##DQ192294|KCNE1L|23630|KCNE1-like##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##BC085605|TMEM164|84187|transmembrane protein 164	0.999227	0.0	denovo_WM_7:52:0.690
chr11	76735380	76735446	reg1011071.p1	3.894	+	TSC_hg19_v1_chr11_+_76571985 AK308856 AK002100 AK316120 AK295327 AK295142 AK294978 BC049837 BC063034 AK293800 BC073853 CU687264	-163420	+	TSC_hg19_v1_chr11_+_76571961 NM_018367 AK315000 AF327353 AF214454	-163481	+	TSC_hg19_v1_chr11_+_76494400 NM_015516 AK091475 AX747009 AK075476 AK313405 AY358317 BC020975	-241136	+	NM_138706 AK127544 AK292773 TSC_hg19_v1_chr11_+_76745441 AK313682 AK172863 BC103908 BC103909 BC103910	10046	+	TSC_hg19_v1_chr11_+_76778017 BC018123 NM_004055 AK128124 AK313132 AK310978 AK094150 AB209087	42614	+	CU686775 BC069115 BC069365 NM_006189	78471	+	AK308856|ACER3|55331|alkaline ceramidase 3##AK002100|ACER3|55331|alkaline ceramidase 3##AK316120|ACER3|55331|alkaline ceramidase 3##AK295327|ACER3|55331|alkaline ceramidase 3##AK295142|ACER3|55331|alkaline ceramidase 3##AK294978|ACER3|55331|alkaline ceramidase 3##BC049837|ACER3|55331|alkaline ceramidase 3##BC063034|ACER3|55331|alkaline ceramidase 3##AK293800|ACER3|55331|alkaline ceramidase 3##BC073853|ACER3|55331|alkaline ceramidase 3##NM_018367|ACER3|55331|alkaline ceramidase 3##AK315000|ACER3|55331|alkaline ceramidase 3##AF327353|ACER3|55331|alkaline ceramidase 3##AF214454|ACER3|55331|alkaline ceramidase 3##NM_015516|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AK091475|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AK075476|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AK313405|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##AY358317|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##BC020975|TSKU|25987|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)##NM_138706|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK127544|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK292773|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK313682|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##AK172863|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103908|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103909|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC103910|B3GNT6|192134|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)##BC018123|CAPN5|726|calpain 5##NM_004055|CAPN5|726|calpain 5##AK128124|CAPN5|726|calpain 5##AK313132|CAPN5|726|calpain 5##AK310978|CAPN5|726|calpain 5##AK094150|CAPN5|726|calpain 5##AB209087|CAPN5|726|calpain 5##BC069115|OMP|4975|olfactory marker protein##BC069365|OMP|4975|olfactory marker protein##NM_006189|OMP|4975|olfactory marker protein	1.985461	0.0	denovo_WM_7:-72:0.268	denovo_WM_7:-73:0.695	denovo_WM_7:-88:0.835
chr16	89597	89713	reg1012291.p2	3.894	+	None	None	None	None	None	None	None	None	None	BC001381 TSC_hg19_v1_chr16_+_103106	13404	+	TSC_hg19_v1_chr16_-_103609 AB587374 DQ896281 EU176418 BC011932 AF060223 AF051316 NM_016310	13976	-	TSC_hg19_v1_chr16_+_103838 NM_024571	14183	+	BC001381|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)##DQ896281|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##EU176418|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##BC011932|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##AF060223|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##AF051316|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##NM_016310|POLR3K|51728|polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa##NM_024571|SNRNP25|79622|small nuclear ribonucleoprotein 25kDa (U11/U12)	0.997274	0.0	denovo_WM_7:-13:0.950
chr19	37701269	37701392	reg1015689.p2	3.894	+	AF086428 BC063820 TSC_hg19_v1_chr19_-_37663623 AK056389 NM_152655 AK290660 BC026081	-37733	-	NM_199126 BC052956	-37996	-	TSC_hg19_v1_chr19_+_37569355 AK315728 AK056753 BC026210 NM_144689	-131986	+	BC051277 BC067088 BC080550 TSC_hg19_v1_chr19_-_37701446 AY147015 NM_152279	87	-	TSC_hg19_v1_chr19_+_37709098 AK122892	7818	+	AK093182 AX747975 AY438646 NM_152604	16035	+	AF086428|ZNF585A|199704|zinc finger protein 585A##BC063820|ZNF585A|199704|zinc finger protein 585A##AK056389|ZNF585A|199704|zinc finger protein 585A##NM_152655|ZNF585A|199704|zinc finger protein 585A##AK290660|ZNF585A|199704|zinc finger protein 585A##BC026081|ZNF585A|199704|zinc finger protein 585A##NM_199126|ZNF585A|199704|zinc finger protein 585A##BC052956|ZNF585A|199704|zinc finger protein 585A##AK315728|ZNF420|147923|zinc finger protein 420##AK056753|ZNF420|147923|zinc finger protein 420##BC026210|ZNF420|147923|zinc finger protein 420##NM_144689|ZNF420|147923|zinc finger protein 420##BC051277|ZNF585B|92285|zinc finger protein 585B##BC067088|ZNF585B|92285|zinc finger protein 585B##BC080550|ZNF585B|92285|zinc finger protein 585B##AY147015|ZNF585B|92285|zinc finger protein 585B##NM_152279|ZNF585B|92285|zinc finger protein 585B##AK122892|ZNF383|163087|zinc finger protein 383##AK093182|ZNF383|163087|zinc finger protein 383##AY438646|ZNF383|163087|zinc finger protein 383##NM_152604|ZNF383|163087|zinc finger protein 383	0.0	0.0	
chr4	185766869	185767009	reg1016380.p2	3.894	+	TSC_hg19_v1_chr4_-_185747201 AK303486 NM_001995	-19705	-	TSC_hg19_v1_chr4_-_185747123 L09229 AK292798	-19838	-	TSC_hg19_v1_chr4_-_185726866 AK296826	-40036	-	BC140795 BC144567 BC144568 BC144569 NM_001029887	173099	+	NM_001151 TSC_hg19_v1_chr4_+_186064419 J02966 AK291902 BC063643 BC008664 AB209764 BC061589 J03593 DQ891547 DQ894735 AB464231	297531	+	TSC_hg19_v1_chr4_-_186125137 AK091993 BC020772 BC030535 NM_020827	358205	-	AK303486|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##NM_001995|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##L09229|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##AK292798|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##AK296826|ACSL1|2180|acyl-CoA synthetase long-chain family member 1##BC140795|HELT|391723|helt bHLH transcription factor##BC144567|HELT|391723|helt bHLH transcription factor##BC144569|HELT|391723|helt bHLH transcription factor##NM_001029887|HELT|391723|helt bHLH transcription factor##NM_001151|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J02966|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK291902|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC063643|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC008664|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AB209764|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##BC061589|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##J03593|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ891547|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##DQ894735|SLC25A4|291|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4##AK091993|KIAA1430|57587|KIAA1430##BC020772|KIAA1430|57587|KIAA1430##BC030535|KIAA1430|57587|KIAA1430##NM_020827|KIAA1430|57587|KIAA1430	1.400038	0.0	denovo_WM_7:63:0.938	denovo_WM_7:91:0.434
chr6	64229366	64229522	reg1001046.p2	3.894	+	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	-199580	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	-1233443	-	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-5941765	-	TSC_hg19_v1_chr6_+_64231650 CR749458	2211	+	TSC_hg19_v1_chr6_+_64281913 BC045571 NM_003463	52472	+	TSC_hg19_v1_chr6_+_64282432 AK312526	52991	+	DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##BC045571|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##NM_003463|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1##AK312526|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.0	0.0	
chrX	48794811	48794947	reg1008627.p2	3.894	+	U77735 BC018111 AK312745 TSC_hg19_v1_chrX_-_48776302 AK290931 NM_006875	-18532	-	D84454 NM_001042498	-25645	-	CR450287 D88146 NM_005660 AK225508 AK290284 AK293415 AK293419 AK298484 AK299748 TSC_hg19_v1_chrX_-_48768926 BC035747 NM_001032289 AK292816	-25948	-	TSC_hg19_v1_chrX_-_48814831 BC028225	19926	-	TSC_hg19_v1_chrX_-_48814870 BC009917 NM_001136157 NM_001136158 NM_017602	19995	-	TSC_hg19_v1_chrX_-_48815168 BC098440	20252	-	U77735|PIM2|11040|pim-2 oncogene##BC018111|PIM2|11040|pim-2 oncogene##AK312745|PIM2|11040|pim-2 oncogene##AK290931|PIM2|11040|pim-2 oncogene##NM_006875|PIM2|11040|pim-2 oncogene##D84454|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001042498|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##CR450287|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##D88146|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_005660|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK225508|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK290284|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293415|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK293419|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK298484|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK299748|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC035747|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##NM_001032289|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##AK292816|SLC35A2|7355|solute carrier family 35 (UDP-galactose transporter), member A2##BC028225|OTUD5|55593|OTU domain containing 5##BC009917|OTUD5|55593|OTU domain containing 5##NM_001136157|OTUD5|55593|OTU domain containing 5##NM_001136158|OTUD5|55593|OTU domain containing 5##NM_017602|OTUD5|55593|OTU domain containing 5##BC098440|OTUD5|55593|OTU domain containing 5	0.0	0.0	
chr11	118654513	118654689	reg1012617.p1	3.893	+	AK223140 AK309565 AK091981 AK223143 AX747289 BC109206 NM_007180 AB000824	-104234	-	NM_001144758 NM_001144759 TSC_hg19_v1_chr11_+_118478332 CR749783 BC098586 AB014538 AK295819 AL832373 AK074070 AK125783	-176224	+	AB094090 NM_015157	-177389	+	BC065007 TSC_hg19_v1_chr11_-_118661679 AK313244	7032	-	TSC_hg19_v1_chr11_-_118661835 D17532	7235	-	BC039826 TSC_hg19_v1_chr11_-_118661855	7254	-	AK223140|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK309565|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK091981|TREH|11181|trehalase (brush-border membrane glycoprotein)##AK223143|TREH|11181|trehalase (brush-border membrane glycoprotein)##BC109206|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_007180|TREH|11181|trehalase (brush-border membrane glycoprotein)##AB000824|TREH|11181|trehalase (brush-border membrane glycoprotein)##NM_001144758|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_001144759|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##CR749783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC098586|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB014538|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK295819|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AL832373|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK074070|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AK125783|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##AB094090|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##NM_015157|PHLDB1|23187|pleckstrin homology-like domain, family B, member 1##BC065007|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##AK313244|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##D17532|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6##BC039826|DDX6|1656|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.993526	0.0	denovo_WM_7:-73:0.881
chr12	96589172	96589327	reg1001053.p3	3.893	+	TSC_hg19_v1_chr12_+_96588254 BC017371	-982	+	TSC_hg19_v1_chr12_+_96588154 NM_005230 Z36715 AK312694	-1123	+	AK301308 TSC_hg19_v1_chr12_-_96429399 AK310522 AK293630	-159834	-	X66360 TSC_hg19_v1_chr12_-_96794129 BC033005 AK294698	204734	-	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	205068	-	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	711782	+	BC017371|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##NM_005230|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##Z36715|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK312694|ELK3|2004|ELK3, ETS-domain protein (SRF accessory protein 2)##AK301308|LTA4H|4048|leukotriene A4 hydrolase##AK293630|LTA4H|4048|leukotriene A4 hydrolase##X66360|CDK17|5128|cyclin-dependent kinase 17##BC033005|CDK17|5128|cyclin-dependent kinase 17##AK294698|CDK17|5128|cyclin-dependent kinase 17##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1	0.042563	0.0	
chr19	18199841	18199980	reg1009803.p1	3.893	+	EU832463 EU832545 BC137404 BC137406 NM_005535 NM_153701 U03187 BC029121 TSC_hg19_v1_chr19_-_18197721 AK225919 AK290423	-2178	-	TSC_hg19_v1_chr19_+_18118978 AF193051 NM_015683 AK000689 AK128588 BC022516 AK314657 AB529119	-80892	+	TSC_hg19_v1_chr19_+_18111932 NM_001025604 AK127940	-87960	+	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	8699	+	BC063240 TSC_hg19_v1_chr19_+_18263972	64071	+	TSC_hg19_v1_chr19_+_18264004 BC070082 NM_005027 BC090249	64122	+	EU832463|IL12RB1|3594|interleukin 12 receptor, beta 1##EU832545|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137404|IL12RB1|3594|interleukin 12 receptor, beta 1##BC137406|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_005535|IL12RB1|3594|interleukin 12 receptor, beta 1##NM_153701|IL12RB1|3594|interleukin 12 receptor, beta 1##U03187|IL12RB1|3594|interleukin 12 receptor, beta 1##BC029121|IL12RB1|3594|interleukin 12 receptor, beta 1##AK225919|IL12RB1|3594|interleukin 12 receptor, beta 1##AK290423|IL12RB1|3594|interleukin 12 receptor, beta 1##AF193051|ARRDC2|27106|arrestin domain containing 2##NM_015683|ARRDC2|27106|arrestin domain containing 2##AK000689|ARRDC2|27106|arrestin domain containing 2##AK128588|ARRDC2|27106|arrestin domain containing 2##BC022516|ARRDC2|27106|arrestin domain containing 2##AK314657|ARRDC2|27106|arrestin domain containing 2##NM_001025604|ARRDC2|27106|arrestin domain containing 2##AK127940|ARRDC2|27106|arrestin domain containing 2##NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3##BC070082|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_005027|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##BC090249|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)	1.491909	0.0	denovo_WM_7:-42:0.435	denovo_WM_7:-62:0.955
chr20	1310799	1310882	reg1012130.p1	3.893	+	TSC_hg19_v1_chr20_-_1309809 BC002727 NM_080489	-997	-	AK296577 TSC_hg19_v1_chr20_-_1309784	-1055	-	AF159228 NM_001199784	-4328	-	TSC_hg19_v1_chr20_-_1373659 AF205192 AB241123 AB241124 AB241125 BT007066 CR407613 CR542168 DQ891819 AB463639 X52220 BC005147 BC001925	62792	-	TSC_hg19_v1_chr20_-_1373733 D28444 M34539 AK309026	62882	-	TSC_hg19_v1_chr20_-_1373754 BC119733 BC119732 NM_000801 NM_001199786 NM_054014	62942	-	BC002727|SDCBP2|27111|syndecan binding protein (syntenin) 2##NM_080489|SDCBP2|27111|syndecan binding protein (syntenin) 2##AK296577|SDCBP2|27111|syndecan binding protein (syntenin) 2##AF159228|SDCBP2|27111|syndecan binding protein (syntenin) 2##NM_001199784|SDCBP2|27111|syndecan binding protein (syntenin) 2##AF205192|FKBP1A|2280|FK506 binding protein 1A, 12kDa##AB241123|FKBP1A|2280|FK506 binding protein 1A, 12kDa##AB241124|FKBP1A|2280|FK506 binding protein 1A, 12kDa##AB241125|FKBP1A|2280|FK506 binding protein 1A, 12kDa##BT007066|FKBP1A|2280|FK506 binding protein 1A, 12kDa##CR407613|FKBP1A|2280|FK506 binding protein 1A, 12kDa##CR542168|FKBP1A|2280|FK506 binding protein 1A, 12kDa##DQ891819|FKBP1A|2280|FK506 binding protein 1A, 12kDa##X52220|FKBP1A|2280|FK506 binding protein 1A, 12kDa##BC005147|FKBP1A|2280|FK506 binding protein 1A, 12kDa##BC001925|FKBP1A|2280|FK506 binding protein 1A, 12kDa##D28444|FKBP1A|2280|FK506 binding protein 1A, 12kDa##M34539|FKBP1A|2280|FK506 binding protein 1A, 12kDa##AK309026|FKBP1A-SDCBP2|100528031|FKBP1A-SDCBP2 readthrough (non-protein coding)##BC119733|FKBP1A|2280|FK506 binding protein 1A, 12kDa##BC119732|FKBP1A|2280|FK506 binding protein 1A, 12kDa##NM_000801|FKBP1A|2280|FK506 binding protein 1A, 12kDa##NM_001199786|FKBP1A|2280|FK506 binding protein 1A, 12kDa##NM_054014|FKBP1A|2280|FK506 binding protein 1A, 12kDa	0.0	0.0	
chr3	31254396	31254514	reg1013980.p1	3.893	+	AL832766 NM_207359	-318303	-	AB384947 TSC_hg19_v1_chr3_+_30648380 D28131	-606052	+	TSC_hg19_v1_chr3_+_30648121 BC040499 NM_001024847 NM_003242 M85079 AK314102 AK300383	-606433	+	TSC_hg19_v1_chr3_+_31574119 AK311488	319675	+	TSC_hg19_v1_chr3_+_31574468 AK074587	319994	+	TSC_hg19_v1_chr3_+_31574485 AX799082 AY074880 NM_178862	320027	+	AL832766|GADL1|339896|glutamate decarboxylase-like 1##NM_207359|GADL1|339896|glutamate decarboxylase-like 1##D28131|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##BC040499|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_001024847|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##NM_003242|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##M85079|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK314102|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK300383|TGFBR2|7048|transforming growth factor, beta receptor II (70/80kDa)##AK311488|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AK074587|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AX799082|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##AY074880|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)##NM_178862|STT3B|201595|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	0.998861	0.0	denovo_WM_7:-55:0.314	denovo_WM_7:-56:0.314	denovo_WM_7:-57:0.314
chr8	125492611	125492739	reg1013272.p1	3.893	+	TSC_hg19_v1_chr8_+_125487193 AK001602 AB464690 CU692372	-5404	+	AF064801 TSC_hg19_v1_chr8_+_125487120 BC021571 BC064636	-5537	+	TSC_hg19_v1_chr8_+_125486954 NM_007218	-5697	+	TSC_hg19_v1_chr8_-_125551327 AF212250 BC064964 AY071865 AK312204 BC007066 NM_001146160 NM_032026	58632	-	NM_005005 AF261090 TSC_hg19_v1_chr8_+_125551363 AF044956 AF067168 AK026538 AL136714 BC007672 AK302286 AK313432 AB463917	58709	+	TSC_hg19_v1_chr8_-_125579395 AK126989	86731	-	AK001602|RNF139|11236|ring finger protein 139##AF064801|RNF139|11236|ring finger protein 139##BC021571|RNF139|11236|ring finger protein 139##BC064636|RNF139|11236|ring finger protein 139##NM_007218|RNF139|11236|ring finger protein 139##AF212250|TATDN1|83940|TatD DNase domain containing 1##BC064964|TATDN1|83940|TatD DNase domain containing 1##AY071865|TATDN1|83940|TatD DNase domain containing 1##AK312204|TATDN1|83940|TatD DNase domain containing 1##BC007066|TATDN1|83940|TatD DNase domain containing 1##NM_001146160|TATDN1|83940|TatD DNase domain containing 1##NM_032026|TATDN1|83940|TatD DNase domain containing 1##NM_005005|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF261090|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF044956|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AF067168|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK026538|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AL136714|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##BC007672|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK313432|NDUFB9|4715|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa##AK126989|MTSS1|9788|metastasis suppressor 1	0.999185	0.0	
chr11	62322987	62323132	reg1011969.p2	3.892	+	TSC_hg19_v1_chr11_-_62314314 AK300376 BC128460 NM_001620 NM_024060	-8745	-	TSC_hg19_v1_chr11_-_62314221 BC012477 BC000926 AK095346	-8823	-	AK312165 NM_003357 BC004481 U01101 DQ893375 DQ896769 X13197 AB590371 CR541780	-136523	+	DQ185040 BT006677 CR407625 BC006509 BC006520 CU674184 CU677463 CU680700 BC000384 DQ891103 DQ894284 Z11531 AB527934 BC009865 BC015813 BC018857 BC018853 BC028179 TSC_hg19_v1_chr11_-_62341334 BC013918 AK092787 AK299876 AY542307 BC067738 AK129569 AK129618 AK300729 X63526 AK130026 AK300686 BC031012	18265	-	TSC_hg19_v1_chr11_-_62341364 NM_001404	18344	-	TSC_hg19_v1_chr11_+_62341675 AK125351	18607	+	AK300376|AHNAK|79026|AHNAK nucleoprotein##BC128460|AHNAK|79026|AHNAK nucleoprotein##NM_001620|AHNAK|79026|AHNAK nucleoprotein##NM_024060|AHNAK|79026|AHNAK nucleoprotein##BC012477|AHNAK|79026|AHNAK nucleoprotein##BC000926|AHNAK|79026|AHNAK nucleoprotein##AK095346|AHNAK|79026|AHNAK nucleoprotein##AK312165|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##NM_003357|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC004481|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##U01101|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ893375|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ896769|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##X13197|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##CR541780|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ185040|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BT006677|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##CR407625|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006509|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC006520|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC000384|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ891103|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##DQ894284|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##Z11531|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC009865|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC015813|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018857|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC018853|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC028179|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC013918|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK092787|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK299876|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AY542307|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC067738|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129569|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK129618|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300729|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##X63526|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK130026|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##AK300686|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##BC031012|EEF1G|1937|eukaryotic translation elongation factor 1 gamma##NM_001404|EEF1G|1937|eukaryotic translation elongation factor 1 gamma	0.0	0.0	
chr11	66610891	66611009	reg1016681.p1	3.892	+	AF121951 NM_001032279 NM_005133 BC093726 BC093728 TSC_hg19_v1_chr11_+_66610911 BC052622 Y13835	-45	+	CU688443 TSC_hg19_v1_chr11_-_66610832	-181	-	TSC_hg19_v1_chr11_+_66512242 AK302025	-98650	+	TSC_hg19_v1_chr11_+_66624583 BC071866	13598	+	NM_024036 BC015581 BC007718	13985	+	TSC_hg19_v1_chr11_-_66639602 AB527412 CU679988	28665	-	AF121951|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##NM_001032279|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##NM_005133|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC093726|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC093728|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##BC052622|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##Y13835|RCE1|9986|RCE1 homolog, prenyl protein protease (S. cerevisiae)##AK302025|C11orf80|79703|chromosome 11 open reading frame 80##BC071866|LRFN4|78999|leucine rich repeat and fibronectin type III domain containing 4##NM_024036|LRFN4|78999|leucine rich repeat and fibronectin type III domain containing 4##BC015581|LRFN4|78999|leucine rich repeat and fibronectin type III domain containing 4##BC007718|LRFN4|78999|leucine rich repeat and fibronectin type III domain containing 4	0.0	0.0	
chr16	20640022	20640150	reg1013435.p2	3.892	+	AB073604 AK129944 AK289416 AK309601 NM_001105069 NM_182617	-52427	-	NM_001010845 AK298359 AK055867 AK303774 AK096039 AK298434 BC125175 BC125176	-177185	+	TSC_hg19_v1_chr16_+_20420855 BC016703 BC068516 NM_017888 AK000588 BC013753	-219226	+	AB059429 BC125177 BC125178 NM_052956	62491	-	BC000448 TSC_hg19_v1_chr16_-_20753141 AK000281 NM_017736	113071	-	NM_005622 NM_202000 TSC_hg19_v1_chr16_+_20775331 AK223139 AK290322 X80062	135258	+	AB073604|ACSM2B|348158|acyl-CoA synthetase medium-chain family member 2B##AK129944|ACSM2B|348158|acyl-CoA synthetase medium-chain family member 2B##AK289416|ACSM2B|348158|acyl-CoA synthetase medium-chain family member 2B##AK309601|ACSM2B|348158|acyl-CoA synthetase medium-chain family member 2B##NM_001105069|ACSM2B|348158|acyl-CoA synthetase medium-chain family member 2B##NM_182617|ACSM2B|348158|acyl-CoA synthetase medium-chain family member 2B##NM_001010845|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##AK298359|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##AK055867|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##AK303774|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##AK096039|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##AK298434|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##BC125175|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##BC125176|ACSM2A|123876|acyl-CoA synthetase medium-chain family member 2A##BC016703|ACSM5|54988|acyl-CoA synthetase medium-chain family member 5##BC068516|ACSM5|54988|acyl-CoA synthetase medium-chain family member 5##NM_017888|ACSM5|54988|acyl-CoA synthetase medium-chain family member 5##AK000588|ACSM5|54988|acyl-CoA synthetase medium-chain family member 5##BC013753|ACSM5|54988|acyl-CoA synthetase medium-chain family member 5##AB059429|ACSM1|116285|acyl-CoA synthetase medium-chain family member 1##BC125177|ACSM1|116285|acyl-CoA synthetase medium-chain family member 1##BC125178|ACSM1|116285|acyl-CoA synthetase medium-chain family member 1##NM_052956|ACSM1|116285|acyl-CoA synthetase medium-chain family member 1##BC000448|THUMPD1|55623|THUMP domain containing 1##AK000281|THUMPD1|55623|THUMP domain containing 1##NM_017736|THUMPD1|55623|THUMP domain containing 1##NM_005622|ACSM3|6296|acyl-CoA synthetase medium-chain family member 3##NM_202000|ACSM3|6296|acyl-CoA synthetase medium-chain family member 3##AK223139|ACSM3|6296|acyl-CoA synthetase medium-chain family member 3##AK290322|ACSM3|6296|acyl-CoA synthetase medium-chain family member 3##X80062|ACSM3|6296|acyl-CoA synthetase medium-chain family member 3	0.123889	0.0	
chr22	51125863	51125970	reg1010389.p1	3.892	+	AB569469 NM_001080420	-12847	+	TSC_hg19_v1_chr22_-_51066581 AK092752 X52151 BX648618 BC014210 AK098659 AB448736 AK301098 AK315011 NM_000487 NM_001085425 NM_001085426 NM_001085427 NM_001085428	-59382	-	AF218778 NM_016431	-84355	+	AK310316 Y00970 NM_001097 CR456366 AB587466 CU012933 CU013221	50727	+	BC075856 TSC_hg19_v1_chr22_-_51222065 AF095352 BC024281 BC040495 BC014879 BC020495 AK308268 NM_001003789 NM_001130919 NM_001130920 NM_001130921 NM_001130922 NM_001130923 NM_007081 AK313442	96147	-	TSC_hg19_v1_chr22_+_51222212 AK293095 AL365511 BC019348 BC065556	96324	+	AB569469|SHANK3|85358|SH3 and multiple ankyrin repeat domains 3##NM_001080420|SHANK3|85358|SH3 and multiple ankyrin repeat domains 3##AK092752|ARSA|410|arylsulfatase A##X52151|ARSA|410|arylsulfatase A##BX648618|ARSA|410|arylsulfatase A##BC014210|ARSA|410|arylsulfatase A##AK098659|ARSA|410|arylsulfatase A##AB448736|ARSA|410|arylsulfatase A##AK301098|ARSA|410|arylsulfatase A##AK315011|ARSA|410|arylsulfatase A##NM_000487|ARSA|410|arylsulfatase A##NM_001085425|ARSA|410|arylsulfatase A##NM_001085426|ARSA|410|arylsulfatase A##NM_001085427|ARSA|410|arylsulfatase A##NM_001085428|ARSA|410|arylsulfatase A##AF218778|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##NM_016431|MAPK8IP2|23542|mitogen-activated protein kinase 8 interacting protein 2##AK310316|ACR|49|acrosin##Y00970|ACR|49|acrosin##NM_001097|ACR|49|acrosin##CR456366|ACR|49|acrosin##CU012933|ACR|49|acrosin##CU013221|ACR|49|acrosin##BC075856|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##AF095352|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##BC024281|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##BC040495|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##BC014879|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##BC020495|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##AK308268|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_001003789|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_001130919|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_001130920|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_001130921|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_001130922|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_001130923|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##NM_007081|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##AK313442|RABL2B|11158|RAB, member of RAS oncogene family-like 2B##AK293095|RPL23AP82|284942|ribosomal protein L23a pseudogene 82##AL365511|RPL23AP82|284942|ribosomal protein L23a pseudogene 82##BC019348|RPL23AP82|284942|ribosomal protein L23a pseudogene 82##BC065556|RPL23AP82|284942|ribosomal protein L23a pseudogene 82	0.998994	0.0	denovo_WM_7:39:0.310	denovo_WM_7:40:0.310	denovo_WM_7:41:0.310
chr3	12667322	12667437	reg1016142.p1	3.892	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-68799	+	NM_001195279	-80417	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-141143	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	38088	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	38236	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	38295	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.199427	0.0	
chr9	111872782	111872951	reg1015478.p1	3.892	+	AB451283 AB451415 HQ258655 TSC_hg19_v1_chr9_-_111775780 BC117208 BC117234 AF080071 AF006070 AF135021 NM_003798 U97067 AF030233 AK314677 AK022926 AK223230 AK022834	-97098	-	TSC_hg19_v1_chr9_+_111696741 BC051827 AF153417 CU677447	-176120	+	TSC_hg19_v1_chr9_+_111696715 AK310297	-176152	+	TSC_hg19_v1_chr9_-_111882206 AK299952	9339	-	TSC_hg19_v1_chr9_-_111882212 BC142984 AF153415 NM_032012	9354	-	TSC_hg19_v1_chr9_-_111929489 AF155065 NM_014334	56663	-	AB451283|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AB451415|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##HQ258655|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##BC117208|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##BC117234|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF080071|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF006070|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF135021|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##NM_003798|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##U97067|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AF030233|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK314677|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK022926|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK223230|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##AK022834|CTNNAL1|8727|catenin (cadherin-associated protein), alpha-like 1##BC051827|FAM206A|54942|family with sequence similarity 206, member A##AF153417|FAM206A|54942|family with sequence similarity 206, member A##AK310297|FAM206A|54942|family with sequence similarity 206, member A##AK299952|C9orf5|23731|chromosome 9 open reading frame 5##AF153415|C9orf5|23731|chromosome 9 open reading frame 5##NM_032012|C9orf5|23731|chromosome 9 open reading frame 5##AF155065|C9orf4|23732|chromosome 9 open reading frame 4##NM_014334|C9orf4|23732|chromosome 9 open reading frame 4	0.020256	0.0	
chr11	60837981	60838090	reg1016298.p1	3.891	+	NM_006725 TSC_hg19_v1_chr11_+_60739236 AK128419 AK312749 BC078669 BC033755 X60992 AK292704 DQ786329 DQ786330 U66142 U66145 U66146	-98810	+	BC037974 BC025710 AF135600 AB020598 NM_016582	-118849	-	TSC_hg19_v1_chr11_+_60691945 NM_017870 NM_178031 AK000546 BC114569 BC032059	-146100	+	NM_014207 AY541703 TSC_hg19_v1_chr11_+_60869960 AK292698 X04391 BC027901 DQ892077 DQ895270	31944	+	BC141827 BC142702 AK097326 TSC_hg19_v1_chr11_-_60928910 NM_017966 AL834261 AK302384	90895	-	NM_001079807 AK301286 AK301293 AK301305 AK312941 AK125628 AK225669 AK225679 AK291864 BC150659 BC171808 BC171814 BC171815 BC171910 BC171920 AB528778	132973	+	NM_006725|CD6|923|CD6 molecule##AK128419|CD6|923|CD6 molecule##AK312749|CD6|923|CD6 molecule##BC078669|CD6|923|CD6 molecule##BC033755|CD6|923|CD6 molecule##X60992|CD6|923|CD6 molecule##AK292704|CD6|923|CD6 molecule##DQ786329|CD6|923|CD6 molecule##DQ786330|CD6|923|CD6 molecule##U66142|CD6|923|CD6 molecule##U66145|CD6|923|CD6 molecule##U66146|CD6|923|CD6 molecule##BC037974|SLC15A3|51296|solute carrier family 15, member 3##BC025710|SLC15A3|51296|solute carrier family 15, member 3##AF135600|SLC15A3|51296|solute carrier family 15, member 3##AB020598|SLC15A3|51296|solute carrier family 15, member 3##NM_016582|SLC15A3|51296|solute carrier family 15, member 3##NM_017870|TMEM132A|54972|transmembrane protein 132A##NM_178031|TMEM132A|54972|transmembrane protein 132A##AK000546|TMEM132A|54972|transmembrane protein 132A##BC114569|TMEM132A|54972|transmembrane protein 132A##BC032059|TMEM132A|54972|transmembrane protein 132A##NM_014207|CD5|921|CD5 molecule##AY541703|CD5|921|CD5 molecule##AK292698|CD5|921|CD5 molecule##X04391|CD5|921|CD5 molecule##BC027901|CD5|921|CD5 molecule##DQ892077|CD5|921|CD5 molecule##DQ895270|CD5|921|CD5 molecule##BC141827|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##BC142702|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK097326|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_017966|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AL834261|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##AK302384|VPS37C|55048|vacuolar protein sorting 37 homolog C (S. cerevisiae)##NM_001079807|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301286|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301293|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK301305|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##AK312941|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK125628|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225669|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK225679|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##AK291864|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC150659|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171808|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171814|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171815|PGA3|643834|pepsinogen 3, group I (pepsinogen A)##BC171910|PGA4|643847|pepsinogen 4, group I (pepsinogen A)##BC171920|PGA4|643847|pepsinogen 4, group I (pepsinogen A)	0.465039	0.0	denovo_WM_7:-34:0.381
chr12	121124387	121124506	reg1013423.p1	3.891	+	AF169148 AF169149 NM_004276 NM_031205	-36076	+	BC030201 NM_001033677	-46025	+	AK223206 TSC_hg19_v1_chr12_-_121019185 AK303144 AF070660 AF117232 AJ306296 BC012505 NM_015918 NM_198202	-105258	-	TSC_hg19_v1_chr12_+_121124951 NM_014730	492	+	TSC_hg19_v1_chr12_+_121124973 D63486 BC016297 BC000371	593	+	CR936818 TSC_hg19_v1_chr12_+_121132759	8272	+	AF169148|CABP1|9478|calcium binding protein 1##AF169149|CABP1|9478|calcium binding protein 1##NM_004276|CABP1|9478|calcium binding protein 1##NM_031205|CABP1|9478|calcium binding protein 1##BC030201|CABP1|9478|calcium binding protein 1##NM_001033677|CABP1|9478|calcium binding protein 1##AK223206|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AK303144|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF070660|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AF117232|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##AJ306296|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##BC012505|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015918|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_198202|POP5|51367|processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae)##NM_014730|MLEC|9761|malectin##D63486|MLEC|9761|malectin##BC016297|MLEC|9761|malectin##BC000371|MLEC|9761|malectin	0.0	0.0	
chr1	46798537	46798647	reg1004497.p2	3.891	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-29205	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-29544	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-29575	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	7851	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	61384	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	174080	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.990759	0.0	denovo_WM_7:-49:0.491	denovo_WM_7:-50:0.286	denovo_WM_7:-51:0.214
chr17	70030554	70030679	reg1000836.p2	3.891	+	TSC_hg19_v1_chr17_+_68165672 AF153820 NM_000891 U16861 U12507	-1864920	+	BC033038 NM_170742	-1929622	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	-1959186	+	TSC_hg19_v1_chr17_-_70116937 AL833139	86322	-	TSC_hg19_v1_chr17_+_70117160 NM_000346 AK295455	86543	+	TSC_hg19_v1_chr17_+_70117168 BC056420 Z46629	86554	+	AF153820|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##NM_000891|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U16861|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##U12507|KCNJ2|3759|potassium inwardly-rectifying channel, subfamily J, member 2##BC033038|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170742|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AL833139|FLJ37644|400618|uncharacterized LOC400618##NM_000346|SOX9|6662|SRY (sex determining region Y)-box 9##AK295455|SOX9|6662|SRY (sex determining region Y)-box 9##BC056420|SOX9|6662|SRY (sex determining region Y)-box 9##Z46629|SOX9|6662|SRY (sex determining region Y)-box 9	0.0	0.0	
chr19	37701025	37701091	reg1015689.p1	3.891	+	AF086428 BC063820 TSC_hg19_v1_chr19_-_37663623 AK056389 NM_152655 AK290660 BC026081	-37461	-	NM_199126 BC052956	-37724	-	TSC_hg19_v1_chr19_+_37569355 AK315728 AK056753 BC026210 NM_144689	-131714	+	BC051277 BC067088 BC080550 TSC_hg19_v1_chr19_-_37701446 AY147015 NM_152279	359	-	TSC_hg19_v1_chr19_+_37709098 AK122892	8090	+	AK093182 AX747975 AY438646 NM_152604	16307	+	AF086428|ZNF585A|199704|zinc finger protein 585A##BC063820|ZNF585A|199704|zinc finger protein 585A##AK056389|ZNF585A|199704|zinc finger protein 585A##NM_152655|ZNF585A|199704|zinc finger protein 585A##AK290660|ZNF585A|199704|zinc finger protein 585A##BC026081|ZNF585A|199704|zinc finger protein 585A##NM_199126|ZNF585A|199704|zinc finger protein 585A##BC052956|ZNF585A|199704|zinc finger protein 585A##AK315728|ZNF420|147923|zinc finger protein 420##AK056753|ZNF420|147923|zinc finger protein 420##BC026210|ZNF420|147923|zinc finger protein 420##NM_144689|ZNF420|147923|zinc finger protein 420##BC051277|ZNF585B|92285|zinc finger protein 585B##BC067088|ZNF585B|92285|zinc finger protein 585B##BC080550|ZNF585B|92285|zinc finger protein 585B##AY147015|ZNF585B|92285|zinc finger protein 585B##NM_152279|ZNF585B|92285|zinc finger protein 585B##AK122892|ZNF383|163087|zinc finger protein 383##AK093182|ZNF383|163087|zinc finger protein 383##AY438646|ZNF383|163087|zinc finger protein 383##NM_152604|ZNF383|163087|zinc finger protein 383	0.0	0.0	
chr2	233979494	233979604	reg1016308.p1	3.891	+	TSC_hg19_v1_chr2_+_233925106 U84400 BC113580 BC113582	-54433	+	NM_001017915 NM_005541 TSC_hg19_v1_chr2_+_233925051 AK298651 AK309644 AK311547 BC099920 U53470 U50041 X98429 BC027960	-54490	+	BC069151 BC107053 NM_005383	-82168	+	NM_001190266 NM_001190267 NM_017974 NM_030803 NM_198890 TSC_hg19_v1_chr2_+_234160315	180717	+	AK000897 AK123876 AK308400 BC006253 BC013411 TSC_hg19_v1_chr2_+_234160328 BC000061 AY358182 AY398617	180774	+	TSC_hg19_v1_chr2_+_234160348 AK024453 EF560734 AK001690	180808	+	U84400|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113580|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC113582|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_001017915|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##NM_005541|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK298651|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##AK309644|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC099920|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U53470|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##U50041|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##X98429|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC027960|INPP5D|3635|inositol polyphosphate-5-phosphatase, 145kDa##BC069151|NEU2|4759|sialidase 2 (cytosolic sialidase)##BC107053|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_005383|NEU2|4759|sialidase 2 (cytosolic sialidase)##NM_001190266|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_001190267|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_017974|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_030803|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##NM_198890|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK000897|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK123876|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK308400|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC006253|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC013411|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##BC000061|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY358182|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AY398617|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK024453|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##EF560734|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)##AK001690|ATG16L1|55054|ATG16 autophagy related 16-like 1 (S. cerevisiae)	0.997689	0.0	denovo_WM_7:39:0.527	denovo_WM_7:40:0.470
chr3	197439275	197439455	reg1011166.p2	3.891	+	TSC_hg19_v1_chr3_-_197354756 BC067856 AK309924 BC094848 AK299863 BC080518 AK311713	-84612	-	NM_203315 TSC_hg19_v1_chr3_-_197300209	-139164	-	TSC_hg19_v1_chr3_-_197282840 BC011964 BC005844 BC019317 NM_004051 NM_203314	-156523	-	TSC_hg19_v1_chr3_-_197463770 BC033615 NM_014687	24421	-	AK303462 NM_001011537	37058	+	NM_001145642	37202	-	BC067856|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK309924|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC094848|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK299863|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##BC080518|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##AK311713|LOC220729|220729|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene##NM_203315|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC011964|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC005844|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC019317|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_004051|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##NM_203314|BDH1|622|3-hydroxybutyrate dehydrogenase, type 1##BC033615|KIAA0226|9711|KIAA0226##NM_014687|KIAA0226|9711|KIAA0226##AK303462|FYTTD1|84248|forty-two-three domain containing 1##NM_001011537|FYTTD1|84248|forty-two-three domain containing 1##NM_001145642|KIAA0226|9711|KIAA0226	0.0	0.0	
chr3	9441480	9441615	reg1015947.p1	3.891	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-1973	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	-2186	+	AK093640 TSC_hg19_v1_chr3_-_9439124 AL110136	-2400	-	TSC_hg19_v1_chr3_+_9476522 AB384632	34969	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	153916	-	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	249595	+	AK092046|SETD5|55209|SET domain containing 5##NM_001080517|SETD5|55209|SET domain containing 5##AK093640|LOC440944|440944|uncharacterized LOC440944##AL110136|LOC440944|440944|uncharacterized LOC440944##BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14	0.998966	0.0	denovo_WM_7:-25:0.314	denovo_WM_7:-26:0.314	denovo_WM_7:-27:0.314
chr5	78201104	78201216	reg1001794.p1	3.891	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-256594	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-356137	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-394964	-	J05225 TSC_hg19_v1_chr5_-_78281101	79928	-	AK290865 TSC_hg19_v1_chr5_-_78281134	79973	-	TSC_hg19_v1_chr5_-_78281142 AK314903	79986	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	0.9966	0.0	denovo_WM_7:13:0.686
chr1	236320231	236320377	reg1011499.p2	3.890	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-14428	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-91564	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-91806	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	124884	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	125012	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	237379	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.0	0.0	
chr17	5185441	5185536	reg1004183.p2	3.890	+	DQ778084 HQ258063 HQ258597 AK297035 BC130554 BC130556 BC144395 NM_207103 BC127925 AK057142 AY358809 AK310145	-47387	-	TSC_hg19_v1_chr17_+_5095367 AK021878 BC029580	-90108	+	TSC_hg19_v1_chr17_-_5095151 AK131271 NM_032530	-90315	-	TSC_hg19_v1_chr17_+_5185578 NM_001083585 NM_004703 AK314183 AK297535 BC041700 BC032435 X91141 BC014025 BC065242 BC018742 AK310932 X77723 AF098638	178	+	AK308142 TSC_hg19_v1_chr17_-_5322979 BC000335 AK225247 AK298158 AK299000	137437	-	AY775314 AY775315 AY775316 AY775317 AY775318 AY775319 AY775320 AY775321 AY775323 NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267	137472	+	DQ778084|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258063|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##HQ258597|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK297035|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130554|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC130556|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC144395|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##NM_207103|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##BC127925|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK057142|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AY358809|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK310145|SCIMP|388325|SLP adaptor and CSK interacting membrane protein##AK021878|LOC100130950|100130950|uncharacterized LOC100130950##BC029580|LOC100130950|100130950|uncharacterized LOC100130950##AK131271|ZNF594|84622|zinc finger protein 594##NM_032530|ZNF594|84622|zinc finger protein 594##NM_001083585|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##NM_004703|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK314183|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK297535|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC041700|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC032435|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X91141|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC065242|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##BC018742|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK310932|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##X77723|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AF098638|RABEP1|9135|rabaptin, RAB GTPase binding effector protein 1##AK308142|NUP88|4927|nucleoporin 88kDa##BC000335|NUP88|4927|nucleoporin 88kDa##AK225247|NUP88|4927|nucleoporin 88kDa##AK298158|NUP88|4927|nucleoporin 88kDa##AK299000|NUP88|4927|nucleoporin 88kDa##AY775314|RPAIN|84268|RPA interacting protein##AY775315|RPAIN|84268|RPA interacting protein##AY775316|RPAIN|84268|RPA interacting protein##AY775317|RPAIN|84268|RPA interacting protein##AY775318|RPAIN|84268|RPA interacting protein##AY775319|RPAIN|84268|RPA interacting protein##AY775320|RPAIN|84268|RPA interacting protein##AY775321|RPAIN|84268|RPA interacting protein##AY775323|RPAIN|84268|RPA interacting protein##NM_001033002|RPAIN|84268|RPA interacting protein##NM_001160243|RPAIN|84268|RPA interacting protein##NM_001160244|RPAIN|84268|RPA interacting protein##NM_001160246|RPAIN|84268|RPA interacting protein##NM_001160266|RPAIN|84268|RPA interacting protein##NM_001160267|RPAIN|84268|RPA interacting protein	0.0	0.0	
chr18	60718147	60718300	reg1015088.p2	3.890	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-333915	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-334297	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	-335559	+	TSC_hg19_v1_chr18_-_60795898 AF401211	77712	-	BC027258 NM_000633 NM_000657	268337	-	TSC_hg19_v1_chr18_-_60986977 X06487	268770	-	BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2	0.0	0.0	
chr19	47538899	47539005	reg1003153.p1	3.890	+	AB054002 NM_002517 U77968	-14741	+	TSC_hg19_v1_chr19_+_47523068 BC039016	-15876	+	AB051509 AF159851 BC131565 BC150257 NM_004491	-117020	+	AK000519 NM_017854 TSC_hg19_v1_chr19_-_47551883 BC002907	12944	-	AK125279 TSC_hg19_v1_chr19_-_47615487	76534	-	TSC_hg19_v1_chr19_-_47615825 AB384098	76871	-	AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##AK000519|TMEM160|54958|transmembrane protein 160##NM_017854|TMEM160|54958|transmembrane protein 160##BC002907|TMEM160|54958|transmembrane protein 160##AK125279|ZC3H4|23211|zinc finger CCCH-type containing 4	0.0	0.0	
chr2	65244556	65244655	reg1011148.p1	3.890	+	TSC_hg19_v1_chr2_+_65216532 AK223486 AK313052 BC072423 BC026216 L14595 L19444 AB026689 DQ891127 DQ894306	-27955	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	-28114	+	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	-29005	+	TSC_hg19_v1_chr2_+_65283579 AB011154 NM_015147 AK093846 AK000856 AK299373 AK304110 AK301173 AK098786 BX648774 BC030534 BC002982 BC004873	38955	+	AF498929 BT019528 BT019529 CR533479 CR536488 AB464118 AB590355 AM392684 CU674450 DQ894084 EU831590 EU831675 TSC_hg19_v1_chr2_-_65357083 M28209	112470	-	TSC_hg19_v1_chr2_-_65357236 BC000905 BX571747 AL050268 AK303678 AK055927 AK315495	112614	-	AK223486|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK313052|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC072423|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##BC026216|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L14595|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##L19444|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB026689|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ891127|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##DQ894306|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AB011154|CEP68|23177|centrosomal protein 68kDa##NM_015147|CEP68|23177|centrosomal protein 68kDa##AK093846|CEP68|23177|centrosomal protein 68kDa##AK000856|CEP68|23177|centrosomal protein 68kDa##AK299373|CEP68|23177|centrosomal protein 68kDa##AK304110|CEP68|23177|centrosomal protein 68kDa##AK301173|CEP68|23177|centrosomal protein 68kDa##AK098786|CEP68|23177|centrosomal protein 68kDa##BX648774|CEP68|23177|centrosomal protein 68kDa##BC030534|CEP68|23177|centrosomal protein 68kDa##BC002982|CEP68|23177|centrosomal protein 68kDa##BC004873|CEP68|23177|centrosomal protein 68kDa##AF498929|RAB1A|5861|RAB1A, member RAS oncogene family##BT019528|RAB1A|5861|RAB1A, member RAS oncogene family##BT019529|RAB1A|5861|RAB1A, member RAS oncogene family##CR533479|RAB1A|5861|RAB1A, member RAS oncogene family##CR536488|RAB1A|5861|RAB1A, member RAS oncogene family##AM392684|RAB1A|5861|RAB1A, member RAS oncogene family##DQ894084|RAB1A|5861|RAB1A, member RAS oncogene family##EU831590|RAB1A|5861|RAB1A, member RAS oncogene family##EU831675|RAB1A|5861|RAB1A, member RAS oncogene family##M28209|RAB1A|5861|RAB1A, member RAS oncogene family##BC000905|RAB1A|5861|RAB1A, member RAS oncogene family##BX571747|RAB1A|5861|RAB1A, member RAS oncogene family##AL050268|RAB1A|5861|RAB1A, member RAS oncogene family##AK303678|RAB1A|5861|RAB1A, member RAS oncogene family##AK055927|RAB1A|5861|RAB1A, member RAS oncogene family##AK315495|RAB1A|5861|RAB1A, member RAS oncogene family	0.999877	0.0	denovo_WM_7:31:0.457	denovo_WM_7:32:0.457
chr4	173661758	173661895	reg1019692.p1	3.890	+	NM_001034845 BC047551 BC144036 BC144037 BC063015	-927182	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-2650412	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-2650628	-	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	428126	+	BC043556 TSC_hg19_v1_chr4_-_174090314	428484	-	BC040577 TSC_hg19_v1_chr4_-_174090813	428981	-	NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.985507	0.0	denovo_WM_7:23:0.964
chr6	135505389	135505505	reg1013088.p1	3.890	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	-2861	+	TSC_hg19_v1_chr6_+_135502507 BC064955	-2952	+	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	-2999	+	TSC_hg19_v1_chr6_+_135516916 AJ616799	11459	+	TSC_hg19_v1_chr6_+_135517056 X17469	11642	+	AY133243 TSC_hg19_v1_chr6_-_135818858 DQ090887	313378	-	AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X17469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY133243|AHI1|54806|Abelson helper integration site 1##DQ090887|AHI1|54806|Abelson helper integration site 1	1.010148	0.014837	
chr8	54812474	54812639	reg1011247.p1	3.890	+	TSC_hg19_v1_chr8_+_54793579 AF060877 HQ257937 BC015614	-18994	+	TSC_hg19_v1_chr8_+_54793431 AK094503 BC063490 NM_003702 BC054867 BC018618 BC031328	-19104	+	AY046538 NM_170587 AF366054 AF366055 AF366056	-48143	+	BT019995 CR542221 AB464783 AK290454 TSC_hg19_v1_chr8_-_54934848 X62585 BC072460 X57198 AK026617 AK297957 BX538034 AK297729	122211	-	TSC_hg19_v1_chr8_-_54934851 M81601	122298	-	TSC_hg19_v1_chr8_-_54934990 NM_006756 NM_201437	122463	-	AF060877|RGS20|8601|regulator of G-protein signaling 20##HQ257937|RGS20|8601|regulator of G-protein signaling 20##BC015614|RGS20|8601|regulator of G-protein signaling 20##AK094503|RGS20|8601|regulator of G-protein signaling 20##BC063490|RGS20|8601|regulator of G-protein signaling 20##NM_003702|RGS20|8601|regulator of G-protein signaling 20##BC018618|RGS20|8601|regulator of G-protein signaling 20##BC031328|RGS20|8601|regulator of G-protein signaling 20##AY046538|RGS20|8601|regulator of G-protein signaling 20##NM_170587|RGS20|8601|regulator of G-protein signaling 20##AF366054|RGS20|8601|regulator of G-protein signaling 20##AF366055|RGS20|8601|regulator of G-protein signaling 20##AF366056|RGS20|8601|regulator of G-protein signaling 20##BT019995|TCEA1|6917|transcription elongation factor A (SII), 1##CR542221|TCEA1|6917|transcription elongation factor A (SII), 1##AK290454|TCEA1|6917|transcription elongation factor A (SII), 1##X62585|TCEA1|6917|transcription elongation factor A (SII), 1##BC072460|TCEA1|6917|transcription elongation factor A (SII), 1##X57198|TCEA1|6917|transcription elongation factor A (SII), 1##AK026617|TCEA1|6917|transcription elongation factor A (SII), 1##AK297957|TCEA1|6917|transcription elongation factor A (SII), 1##BX538034|TCEA1|6917|transcription elongation factor A (SII), 1##AK297729|TCEA1|6917|transcription elongation factor A (SII), 1##M81601|TCEA1|6917|transcription elongation factor A (SII), 1##NM_006756|TCEA1|6917|transcription elongation factor A (SII), 1##NM_201437|TCEA1|6917|transcription elongation factor A (SII), 1	0.0	0.016777	
chr9	130540801	130540973	reg1013556.p2	3.890	+	CU693348 BC027962 AY358440 AF124251 AK292041 BX647905 NM_001252334 NM_005489	-7309	-	AK311510 NM_001142532 AK294386 NM_001142531	-16180	-	AK291393 TSC_hg19_v1_chr9_-_130517562 NM_001142534 AK056068 NM_001142533	-23320	-	BC032365 AK292718 AK096983 AK128287 NM_170600	92	-	NM_001261 TSC_hg19_v1_chr9_+_130548312	7421	+	TSC_hg19_v1_chr9_+_130548326 X80230	7448	+	BC027962|SH2D3C|10044|SH2 domain containing 3C##AY358440|SH2D3C|10044|SH2 domain containing 3C##AF124251|SH2D3C|10044|SH2 domain containing 3C##AK292041|SH2D3C|10044|SH2 domain containing 3C##BX647905|SH2D3C|10044|SH2 domain containing 3C##NM_001252334|SH2D3C|10044|SH2 domain containing 3C##NM_005489|SH2D3C|10044|SH2 domain containing 3C##AK311510|SH2D3C|10044|SH2 domain containing 3C##NM_001142532|SH2D3C|10044|SH2 domain containing 3C##AK294386|SH2D3C|10044|SH2 domain containing 3C##NM_001142531|SH2D3C|10044|SH2 domain containing 3C##AK291393|SH2D3C|10044|SH2 domain containing 3C##NM_001142534|SH2D3C|10044|SH2 domain containing 3C##AK056068|SH2D3C|10044|SH2 domain containing 3C##NM_001142533|SH2D3C|10044|SH2 domain containing 3C##BC032365|SH2D3C|10044|SH2 domain containing 3C##AK292718|SH2D3C|10044|SH2 domain containing 3C##AK096983|SH2D3C|10044|SH2 domain containing 3C##AK128287|SH2D3C|10044|SH2 domain containing 3C##NM_170600|SH2D3C|10044|SH2 domain containing 3C##NM_001261|CDK9|1025|cyclin-dependent kinase 9##X80230|CDK9|1025|cyclin-dependent kinase 9	0.0	0.0	
chr11	65208369	65208549	reg1013257.p2	3.889	+	TSC_hg19_v1_chr11_+_65193527 AF080092 AF508303	-14936	+	AK027191 TSC_hg19_v1_chr11_+_65192411 AF001893	-16059	+	TSC_hg19_v1_chr11_+_65190274 AK026198	-18181	+	TSC_hg19_v1_chr11_+_65265158 EF177381	56744	+	TSC_hg19_v1_chr11_+_65266515 BC025986 BX538238 FJ209305	58042	+	TSC_hg19_v1_chr11_+_65266869 BC104662	58340	+	AF080092|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF508303|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AK027191|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##AF001893|NEAT1|283131|nuclear paraspeckle assembly transcript 1 (non-protein coding)##EF177381|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BC025986|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)##BX538238|MALAT1|378938|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)	0.0	0.0	
chr14	34409924	34410033	reg1017406.p1	3.889	+	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1001488	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1611442	+	TSC_hg19_v1_chr14_+_32546509 NM_001030055 NM_001173 U17032 BC129928 BC129929	-1863472	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	10171	-	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	521509	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	598907	-	AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##NM_001030055|ARHGAP5|394|Rho GTPase activating protein 5##NM_001173|ARHGAP5|394|Rho GTPase activating protein 5##U17032|ARHGAP5|394|Rho GTPase activating protein 5##BC129928|ARHGAP5|394|Rho GTPase activating protein 5##BC129929|ARHGAP5|394|Rho GTPase activating protein 5##BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein	0.0	0.0	
chr17	73076148	73076327	reg1003038.p2	3.889	+	TSC_hg19_v1_chr17_+_73043325 D79998	-32904	+	TSC_hg19_v1_chr17_+_73043288 BC033329 NM_015353	-33008	+	BC032245 TSC_hg19_v1_chr17_-_73043079	-33158	-	TSC_hg19_v1_chr17_+_73084056 BC009684 NM_004695	7818	+	TSC_hg19_v1_chr17_+_73106069 AK300997 AK310697 BC011728 NM_024585	29817	+	TSC_hg19_v1_chr17_-_73127869 CU692564 BC002516 BC022334 BC008183 BC047763 BC017454 AF154829 AK000419 NM_001252377 NM_014595	51620	-	D79998|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC033329|KCTD2|23510|potassium channel tetramerisation domain containing 2##NM_015353|KCTD2|23510|potassium channel tetramerisation domain containing 2##BC032245|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC009684|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##NM_004695|SLC16A5|9121|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)##AK300997|ARMC7|79637|armadillo repeat containing 7##BC011728|ARMC7|79637|armadillo repeat containing 7##NM_024585|ARMC7|79637|armadillo repeat containing 7##BC002516|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC022334|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC008183|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC047763|NT5C|30833|5', 3'-nucleotidase, cytosolic##BC017454|NT5C|30833|5', 3'-nucleotidase, cytosolic##AF154829|NT5C|30833|5', 3'-nucleotidase, cytosolic##AK000419|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_001252377|NT5C|30833|5', 3'-nucleotidase, cytosolic##NM_014595|NT5C|30833|5', 3'-nucleotidase, cytosolic	0.0	0.0	
chr17	80739789	80739885	reg1017899.p1	3.889	+	TSC_hg19_v1_chr17_+_80710051 AJ006417 DQ891885 EU176650	-29789	+	TSC_hg19_v1_chr17_+_80710000 AK091959 AX747278	-29829	+	TSC_hg19_v1_chr17_+_80709949 BC003094 NM_005993 AB023205 AK293471 BC006364	-29883	+	BC109036 BC109037 AK301690 AK023903 NM_024702	58072	-	BC041588 TSC_hg19_v1_chr17_-_81006463 BC019623	266633	-	TSC_hg19_v1_chr17_-_81009643 AY304503 AY634364 NM_001009905	269832	-	AJ006417|TBCD|6904|tubulin folding cofactor D##DQ891885|TBCD|6904|tubulin folding cofactor D##EU176650|TBCD|6904|tubulin folding cofactor D##AK091959|TBCD|6904|tubulin folding cofactor D##BC003094|TBCD|6904|tubulin folding cofactor D##NM_005993|TBCD|6904|tubulin folding cofactor D##AB023205|TBCD|6904|tubulin folding cofactor D##AK293471|TBCD|6904|tubulin folding cofactor D##BC006364|TBCD|6904|tubulin folding cofactor D##BC109036|ZNF750|79755|zinc finger protein 750##BC109037|ZNF750|79755|zinc finger protein 750##AK301690|ZNF750|79755|zinc finger protein 750##AK023903|ZNF750|79755|zinc finger protein 750##NM_024702|ZNF750|79755|zinc finger protein 750##BC041588|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##BC019623|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##AY304503|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##AY634364|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1##NM_001009905|B3GNTL1|146712|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	0.0	0.999249	CTCF.p2:0:0.999
chr19	3169552	3169626	reg1015401.p2	3.889	+	TSC_hg19_v1_chr19_+_3136030 GU727645 NM_002068 M63904 AK300481 AK291329 BC013585 GU727637	-33445	+	TSC_hg19_v1_chr19_+_3122573 BC051315 CU674752	-46984	+	TSC_hg19_v1_chr19_+_3122331 BC111027 BC001528	-47196	+	NM_003775 TSC_hg19_v1_chr19_+_3178766 BC014970 AJ000479	9163	+	TSC_hg19_v1_chr19_+_3185896 NM_020170	16289	+	AK172848 TSC_hg19_v1_chr19_+_3185938 AK314044 BC010064 BC019091 BC025926	16355	+	GU727645|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##NM_002068|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##M63904|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##AK300481|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##AK291329|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##BC013585|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##GU727637|GNA15|2769|guanine nucleotide binding protein (G protein), alpha 15 (Gq class)##BC001528|GNA11|2767|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)##NM_003775|S1PR4|8698|sphingosine-1-phosphate receptor 4##BC014970|S1PR4|8698|sphingosine-1-phosphate receptor 4##AJ000479|S1PR4|8698|sphingosine-1-phosphate receptor 4##NM_020170|NCLN|56926|nicalin##AK172848|NCLN|56926|nicalin##AK314044|NCLN|56926|nicalin##BC010064|NCLN|56926|nicalin##BC019091|NCLN|56926|nicalin##BC025926|NCLN|56926|nicalin	1.903668	0.0	denovo_WM_7:73:0.854	denovo_WM_7:88:0.433	denovo_WM_7:89:0.518
chr20	35464669	35464816	reg1015081.p1	3.889	+	TSC_hg19_v1_chr20_-_35444558 AK131491	-20122	-	AK057056 TSC_hg19_v1_chr20_-_35407842	-56966	-	TSC_hg19_v1_chr20_-_35402167 BC035821 AK093031 AX747868 AK290738 NM_001145316 NM_024918 AK301671 AK301840 BC058899 AK023408 BC026011 NM_001145315 NM_001145317 NM_001145318	-62557	-	AK126630 NM_199181	23533	-	TSC_hg19_v1_chr20_-_35492072 NM_080627	27392	-	TSC_hg19_v1_chr20_+_35504544 BC127688 BC130646 BC130648 AK123544 NM_080628 HQ258755	39807	+	AK131491|KIAA0889|140710|KIAA0889##AK057056|KIAA0889|140710|KIAA0889##BC035821|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK093031|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK290738|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145316|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_024918|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301671|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK301840|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC058899|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK023408|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##BC026011|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145315|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145317|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##NM_001145318|DSN1|79980|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)##AK126630|KIAA0889|140710|KIAA0889##NM_199181|KIAA0889|140710|KIAA0889##NM_080627|KIAA0889|140710|KIAA0889##BC127688|C20orf118|140711|chromosome 20 open reading frame 118##BC130646|C20orf118|140711|chromosome 20 open reading frame 118##BC130648|C20orf118|140711|chromosome 20 open reading frame 118##AK123544|C20orf118|140711|chromosome 20 open reading frame 118##NM_080628|C20orf118|140711|chromosome 20 open reading frame 118##HQ258755|C20orf118|140711|chromosome 20 open reading frame 118	1.019869	0.0	
chr10	58844506	58844590	reg1014866.p2	3.888	+	AK093808 BC020979 AK293416 TSC_hg19_v1_chr10_-_58121021 AK298148 BC110399 NM_001005413 NM_007057 NM_032997	-723522	-	TSC_hg19_v1_chr10_-_58121017 AF067656 AK225509	-723534	-	NM_001190478 TSC_hg19_v1_chr10_+_57358800	-1485774	+	TSC_hg19_v1_chr10_-_60027655 BC016612 BC065709 NM_152230	1183113	-	BC005962 TSC_hg19_v1_chr10_+_60028929 NM_018464 BC059168 AF220049 BC008474 BC007043 AY960578 AK312017	1184398	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	1250288	+	AK093808|ZWINT|11130|ZW10 interactor##BC020979|ZWINT|11130|ZW10 interactor##AK293416|ZWINT|11130|ZW10 interactor##AK298148|ZWINT|11130|ZW10 interactor##BC110399|ZWINT|11130|ZW10 interactor##NM_001005413|ZWINT|11130|ZW10 interactor##NM_007057|ZWINT|11130|ZW10 interactor##NM_032997|ZWINT|11130|ZW10 interactor##AF067656|ZWINT|11130|ZW10 interactor##AK225509|ZWINT|11130|ZW10 interactor##NM_001190478|MTRNR2L5|100463289|MT-RNR2-like 5##BC016612|IPMK|253430|inositol polyphosphate multikinase##BC065709|IPMK|253430|inositol polyphosphate multikinase##NM_152230|IPMK|253430|inositol polyphosphate multikinase##BC005962|CISD1|55847|CDGSH iron sulfur domain 1##NM_018464|CISD1|55847|CDGSH iron sulfur domain 1##BC059168|CISD1|55847|CDGSH iron sulfur domain 1##AF220049|CISD1|55847|CDGSH iron sulfur domain 1##BC008474|CISD1|55847|CDGSH iron sulfur domain 1##BC007043|CISD1|55847|CDGSH iron sulfur domain 1##AY960578|CISD1|55847|CDGSH iron sulfur domain 1##AK312017|CISD1|55847|CDGSH iron sulfur domain 1##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1	0.992727	0.0	denovo_WM_7:49:0.982
chr11	71508432	71508526	reg1019520.p1	3.888	+	TSC_hg19_v1_chr11_+_71498567 NM_001099653 NM_018172 NM_152563 AK130709 AK311675 AK311518 BC032519 AK001523 AK293221 AK311428 AK315454	-9872	+	BC130498 BC130502 AB126080 NM_001005405	-214565	-	AB126079 BC137550 BC137566 NM_001012710	-231871	+	BC073927 TSC_hg19_v1_chr11_-_71524901 BC054093	16427	-	AF529416 NM_001002035	35766	+	NM_001242853	81019	+	NM_001099653|FAM86C1|55199|family with sequence similarity 86, member C1##NM_018172|FAM86C1|55199|family with sequence similarity 86, member C1##NM_152563|FAM86C1|55199|family with sequence similarity 86, member C1##AK130709|FAM86C1|55199|family with sequence similarity 86, member C1##AK311675|FAM86C1|55199|family with sequence similarity 86, member C1##AK311518|FAM86C1|55199|family with sequence similarity 86, member C1##BC032519|FAM86C1|55199|family with sequence similarity 86, member C1##AK001523|FAM86C1|55199|family with sequence similarity 86, member C1##AK293221|FAM86C1|55199|family with sequence similarity 86, member C1##AK311428|FAM86C1|55199|family with sequence similarity 86, member C1##AK315454|FAM86C1|55199|family with sequence similarity 86, member C1##BC130498|KRTAP5-11|440051|keratin associated protein 5-11##BC130502|KRTAP5-11|440051|keratin associated protein 5-11##AB126080|KRTAP5-11|440051|keratin associated protein 5-11##NM_001005405|KRTAP5-11|440051|keratin associated protein 5-11##AB126079|KRTAP5-10|387273|keratin associated protein 5-10##BC137550|KRTAP5-10|387273|keratin associated protein 5-10##BC137566|KRTAP5-10|387273|keratin associated protein 5-10##NM_001012710|KRTAP5-10|387273|keratin associated protein 5-10##BC073927|LOC285407|285407|asparagine-linked glycosylation 1 homolog pseudogene##AF529416|DEFB108B|245911|defensin, beta 108B##NM_001002035|DEFB108B|245911|defensin, beta 108B##NM_001242853|LOC100129216|100129216|beta-defensin 131-like	2.818653	0.0	denovo_WM_7:31:0.837	denovo_WM_7:-85:0.332	denovo_WM_7:-86:0.308	denovo_WM_7:-101:0.577
chr12	81651861	81651954	reg1013776.p1	3.888	+	TSC_hg19_v1_chr12_+_81471857 BC009317 BC015769 NM_024560 AK025616 AX764482	-180049	+	TSC_hg19_v1_chr12_-_81331487 AB528898 CR407680 BC099921 AK315321 BC046926 BC062332 BC118609 BC122561 AF087693 AF173081 NM_004664	-320317	-	TSC_hg19_v1_chr12_-_81331470 AK309256	-320440	-	AK123372 AK296380 NM_001220479 NM_001220480	111252	-	AK294505 AK297372 AK299853 NM_001220477 NM_001220478	340147	-	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	500464	-	BC009317|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##BC015769|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##NM_024560|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AK025616|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AX764482|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##CR407680|LIN7A|8825|lin-7 homolog A (C. elegans)##BC099921|LIN7A|8825|lin-7 homolog A (C. elegans)##AK315321|LIN7A|8825|lin-7 homolog A (C. elegans)##BC046926|LIN7A|8825|lin-7 homolog A (C. elegans)##BC062332|LIN7A|8825|lin-7 homolog A (C. elegans)##BC118609|LIN7A|8825|lin-7 homolog A (C. elegans)##BC122561|LIN7A|8825|lin-7 homolog A (C. elegans)##AF087693|LIN7A|8825|lin-7 homolog A (C. elegans)##AF173081|LIN7A|8825|lin-7 homolog A (C. elegans)##NM_004664|LIN7A|8825|lin-7 homolog A (C. elegans)##AK309256|LIN7A|8825|lin-7 homolog A (C. elegans)##AK123372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK296380|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220479|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220480|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	0.0	0.61862	CTCF.p2:19:0.619
chr18	29079966	29080146	reg1017078.p1	3.888	+	NM_001943 TSC_hg19_v1_chr18_+_29078205 BC099655 BC099656 BC099657 Z26317 AK308408	-1913	+	AK290367 NM_001944 M76482	-52312	+	AY177664 NM_001134453 NM_177986 AY168788 AY228236 BC132907 BC132909 AY227350	-123250	+	NM_000371 TSC_hg19_v1_chr18_+_29171839 AK312051 BC005310 BC020791 D00096 GU727633 K02091 M10605 X59498 AF162690 BT007189 CR456908 DQ778081 DQ839490 U19780	91741	+	AB024742 BC074835 BC074884 BC069620 BC069642 AF069054 AK314860 AF097159 NM_004775	184483	-	BC103999 BC104000 BC104001 AK302337 NM_001034172	260714	-	NM_001943|DSG2|1829|desmoglein 2##BC099655|DSG2|1829|desmoglein 2##BC099656|DSG2|1829|desmoglein 2##BC099657|DSG2|1829|desmoglein 2##Z26317|DSG2|1829|desmoglein 2##AK308408|DSG2|1829|desmoglein 2##AK290367|DSG3|1830|desmoglein 3##NM_001944|DSG3|1830|desmoglein 3##M76482|DSG3|1830|desmoglein 3##AY177664|DSG4|147409|desmoglein 4##NM_001134453|DSG4|147409|desmoglein 4##NM_177986|DSG4|147409|desmoglein 4##AY168788|DSG4|147409|desmoglein 4##AY228236|DSG4|147409|desmoglein 4##BC132907|DSG4|147409|desmoglein 4##BC132909|DSG4|147409|desmoglein 4##AY227350|DSG4|147409|desmoglein 4##NM_000371|TTR|7276|transthyretin##AK312051|TTR|7276|transthyretin##BC005310|TTR|7276|transthyretin##BC020791|TTR|7276|transthyretin##D00096|TTR|7276|transthyretin##GU727633|TTR|7276|transthyretin##K02091|TTR|7276|transthyretin##M10605|TTR|7276|transthyretin##X59498|TTR|7276|transthyretin##AF162690|TTR|7276|transthyretin##BT007189|TTR|7276|transthyretin##CR456908|TTR|7276|transthyretin##DQ839490|TTR|7276|transthyretin##U19780|TTR|7276|transthyretin##AB024742|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC074835|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC074884|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC069620|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC069642|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AF069054|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AK314860|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##AF097159|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##NM_004775|B4GALT6|9331|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6##BC103999|MCART2|147407|mitochondrial carrier triple repeat 2##BC104000|MCART2|147407|mitochondrial carrier triple repeat 2##BC104001|MCART2|147407|mitochondrial carrier triple repeat 2##AK302337|MCART2|147407|mitochondrial carrier triple repeat 2##NM_001034172|MCART2|147407|mitochondrial carrier triple repeat 2	0.997543	0.0	
chr2	106521464	106521582	reg1013474.p1	3.888	+	NM_001004720 BC000103	-53262	+	TSC_hg19_v1_chr2_+_106432941 AF047487 BC007195	-88548	+	TSC_hg19_v1_chr2_+_106361534 NM_001004722 NM_003581	-159980	+	BC021742 AF325503 NM_032411 TSC_hg19_v1_chr2_+_106682146 AY358601 DQ892412 DQ895626	160641	+	BC009819 AY147934 AY358541 TSC_hg19_v1_chr2_-_106810753 AK290668 AK304872	289222	-	AK075120 AK075170 TSC_hg19_v1_chr2_-_106810758 AK122696	289235	-	NM_001004720|NCK2|8440|NCK adaptor protein 2##BC000103|NCK2|8440|NCK adaptor protein 2##AF047487|NCK2|8440|NCK adaptor protein 2##BC007195|NCK2|8440|NCK adaptor protein 2##NM_001004722|NCK2|8440|NCK adaptor protein 2##NM_003581|NCK2|8440|NCK adaptor protein 2##BC021742|C2orf40|84417|chromosome 2 open reading frame 40##AF325503|C2orf40|84417|chromosome 2 open reading frame 40##NM_032411|C2orf40|84417|chromosome 2 open reading frame 40##AY358601|C2orf40|84417|chromosome 2 open reading frame 40##DQ892412|C2orf40|84417|chromosome 2 open reading frame 40##DQ895626|C2orf40|84417|chromosome 2 open reading frame 40##BC009819|UXS1|80146|UDP-glucuronate decarboxylase 1##AY147934|UXS1|80146|UDP-glucuronate decarboxylase 1##AY358541|UXS1|80146|UDP-glucuronate decarboxylase 1##AK290668|UXS1|80146|UDP-glucuronate decarboxylase 1##AK304872|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075120|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075170|UXS1|80146|UDP-glucuronate decarboxylase 1##AK122696|UXS1|80146|UDP-glucuronate decarboxylase 1	0.0	0.0	
chr2	106866102	106866228	reg1016279.p1	3.888	+	TSC_hg19_v1_chr2_-_106810781 NM_025076	-55360	-	AK075120 AK075170 TSC_hg19_v1_chr2_-_106810758 AK122696	-55407	-	BC009819 AY147934 AY358541 TSC_hg19_v1_chr2_-_106810753 AK290668 AK304872	-55420	-	NM_001144013	218635	-	FJ433885 TSC_hg19_v1_chr2_-_107502508	636320	-	AB058780 NM_001142351 TSC_hg19_v1_chr2_-_107502624	636454	-	NM_025076|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075120|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075170|UXS1|80146|UDP-glucuronate decarboxylase 1##AK122696|UXS1|80146|UDP-glucuronate decarboxylase 1##BC009819|UXS1|80146|UDP-glucuronate decarboxylase 1##AY147934|UXS1|80146|UDP-glucuronate decarboxylase 1##AY358541|UXS1|80146|UDP-glucuronate decarboxylase 1##AK290668|UXS1|80146|UDP-glucuronate decarboxylase 1##AK304872|UXS1|80146|UDP-glucuronate decarboxylase 1##NM_001144013|RGPD3|653489|RANBP2-like and GRIP domain containing 3##AB058780|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##NM_001142351|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2	1.619682	0.0	denovo_WM_7:-24:0.924	denovo_WM_7:106:0.391
chr2	97301736	97301861	reg1013094.p1	3.888	+	NM_212481 AK307768 TSC_hg19_v1_chr2_+_97202485 AK300173 AK304566 BX648918 M62324 BC032488 BC067301	-99313	+	TSC_hg19_v1_chr2_+_97001519 BC024211 AK303725 AK291053 AK308050 AK310649 AK299248 D38553 CU692884 DQ893432 EU176758	-300262	+	TSC_hg19_v1_chr2_+_97001479 NM_015341	-300322	+	TSC_hg19_v1_chr2_-_97304050 AF311326 BC063792 AK311617 AK314367 AK302646	2221	-	TSC_hg19_v1_chr2_-_97304062 AB037731 BC015469	2269	-	TSC_hg19_v1_chr2_-_97304084 AK023813 AY050169 AK304011 NM_001115016 NM_017991	2300	-	NM_212481|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK307768|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK300173|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##AK304566|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BX648918|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##M62324|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC032488|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC067301|ARID5A|10865|AT rich interactive domain 5A (MRF1-like)##BC024211|NCAPH|23397|non-SMC condensin I complex, subunit H##AK303725|NCAPH|23397|non-SMC condensin I complex, subunit H##AK291053|NCAPH|23397|non-SMC condensin I complex, subunit H##AK308050|NCAPH|23397|non-SMC condensin I complex, subunit H##AK310649|NCAPH|23397|non-SMC condensin I complex, subunit H##AK299248|NCAPH|23397|non-SMC condensin I complex, subunit H##D38553|NCAPH|23397|non-SMC condensin I complex, subunit H##DQ893432|NCAPH|23397|non-SMC condensin I complex, subunit H##EU176758|NCAPH|23397|non-SMC condensin I complex, subunit H##NM_015341|NCAPH|23397|non-SMC condensin I complex, subunit H##AF311326|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC063792|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK311617|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK314367|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK302646|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AB037731|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##BC015469|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK023813|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AY050169|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##AK304011|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##NM_001115016|KANSL3|55683|KAT8 regulatory NSL complex subunit 3##NM_017991|KANSL3|55683|KAT8 regulatory NSL complex subunit 3	0.999006	0.0	denovo_WM_7:-60:0.784
chr5	133615803	133615906	reg1012618.p2	3.888	+	TSC_hg19_v1_chr5_-_133561906 NM_002715	-53951	-	TSC_hg19_v1_chr5_-_133561763 BC000400 BC002657 BC019275 BC031696 AK057424 AK097599	-54099	-	AB451240 AB451365 CR457417 AB385080 X12646 TSC_hg19_v1_chr5_-_133561733 J03804	-54210	-	BC041799 NM_001113575 NM_016508 TSC_hg19_v1_chr5_-_133702854	86960	-	TSC_hg19_v1_chr5_-_133706735 AK301802 AK294740 AK294559 AK299305 AK297586 AK310955	90875	-	M74525 NM_003337 TSC_hg19_v1_chr5_+_133706874	91020	+	NM_002715|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##BC000400|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##BC002657|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##BC019275|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##BC031696|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##AK057424|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##AK097599|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##AB451240|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##AB451365|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##CR457417|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##X12646|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##J03804|PPP2CA|5515|protein phosphatase 2, catalytic subunit, alpha isozyme##BC041799|CDKL3|51265|cyclin-dependent kinase-like 3##NM_001113575|CDKL3|51265|cyclin-dependent kinase-like 3##NM_016508|CDKL3|51265|cyclin-dependent kinase-like 3##AK301802|CDKL3|51265|cyclin-dependent kinase-like 3##AK294740|CDKL3|51265|cyclin-dependent kinase-like 3##AK294559|CDKL3|51265|cyclin-dependent kinase-like 3##AK299305|CDKL3|51265|cyclin-dependent kinase-like 3##AK297586|CDKL3|51265|cyclin-dependent kinase-like 3##AK310955|CDKL3|51265|cyclin-dependent kinase-like 3##M74525|UBE2B|7320|ubiquitin-conjugating enzyme E2B##NM_003337|UBE2B|7320|ubiquitin-conjugating enzyme E2B	0.996457	0.0	denovo_WM_7:61:0.778
chr5	86526994	86527134	reg1011335.p2	3.888	+	TSC_hg19_v1_chr5_+_85913763 BC001005 NM_001867 AK309192 BC007498 X16560 BT007098	-613247	+	TSC_hg19_v1_chr5_+_85913757 AK026505	-613306	+	TSC_hg19_v1_chr5_-_83680612 BC030828 NM_005711	-2846400	-	TSC_hg19_v1_chr5_+_86563706 CR749722	36621	+	TSC_hg19_v1_chr5_+_86563831 BC131816	36762	+	TSC_hg19_v1_chr5_+_86564085 AB209106 NM_002890 BC033015	37002	+	BC001005|COX7C|1350|cytochrome c oxidase subunit VIIc##NM_001867|COX7C|1350|cytochrome c oxidase subunit VIIc##BC007498|COX7C|1350|cytochrome c oxidase subunit VIIc##X16560|COX7C|1350|cytochrome c oxidase subunit VIIc##BT007098|COX7C|1350|cytochrome c oxidase subunit VIIc##AK026505|COX7C|1350|cytochrome c oxidase subunit VIIc##BC030828|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##NM_005711|EDIL3|10085|EGF-like repeats and discoidin I-like domains 3##CR749722|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##AB209106|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##NM_002890|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1##BC033015|RASA1|5921|RAS p21 protein activator (GTPase activating protein) 1	0.0	0.0	
chr12	110551322	110551426	reg1014965.p1	3.887	+	AK097461 NM_207435	-45875	-	TSC_hg19_v1_chr12_-_110486328 AK021447 BC041968	-65045	-	AK302535 BC032833 TSC_hg19_v1_chr12_+_110437393 CU691256 AY364251	-113931	+	NM_001143779 NM_014055 NM_031473 TSC_hg19_v1_chr12_+_110562218 AF139540 AF332010 BC005396 AK291043 BC004536	10847	+	TSC_hg19_v1_chr12_+_110719041 NM_001681 NM_170665	167661	+	TSC_hg19_v1_chr12_+_110719528 M23114 BC035588 M23115 CU690124	167994	+	AK097461|C12orf76|400073|chromosome 12 open reading frame 76##NM_207435|C12orf76|400073|chromosome 12 open reading frame 76##AK021447|C12orf76|400073|chromosome 12 open reading frame 76##BC041968|C12orf76|400073|chromosome 12 open reading frame 76##AK302535|ANKRD13A|88455|ankyrin repeat domain 13A##BC032833|ANKRD13A|88455|ankyrin repeat domain 13A##AY364251|ANKRD13A|88455|ankyrin repeat domain 13A##NM_001143779|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_014055|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_031473|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF139540|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AF332010|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC005396|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##AK291043|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##BC004536|IFT81|28981|intraflagellar transport 81 homolog (Chlamydomonas)##NM_001681|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##NM_170665|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23114|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##BC035588|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2##M23115|ATP2A2|488|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	2.634202	0.0	denovo_WM_7:52:0.270	denovo_WM_7:53:0.727	denovo_WM_7:68:0.860	denovo_WM_7:-97:0.524
chr17	15140626	15140741	reg1016034.p1	3.887	+	TSC_hg19_v1_chr17_+_14204397 AK023723 BC063301 AF105377 NM_006041 BC069664 BC069725	-936238	+	NM_001007530 BC146859 BC071823	-1000520	-	TSC_hg19_v1_chr17_+_13972841 BC000060 BC006394 U09466 AK294213 AK295925 BT006985 CU674016 DQ893604 DQ895073	-1167802	+	CR541931 CR541953 M94048 NM_153322 S61788 TSC_hg19_v1_chr17_-_15164113	23397	-	AK300690 L03203 TSC_hg19_v1_chr17_-_15165834	25136	-	AK290640 TSC_hg19_v1_chr17_-_15165870 BC019040	25182	-	AK023723|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC063301|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##AF105377|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##NM_006041|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC069664|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##BC069725|HS3ST3B1|9953|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1##NM_001007530|CDRT15|146822|CMT1A duplicated region transcript 15##BC146859|CDRT15|146822|CMT1A duplicated region transcript 15##BC071823|CDRT15|146822|CMT1A duplicated region transcript 15##BC000060|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##BC006394|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##U09466|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK294213|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##AK295925|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##BT006985|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##DQ893604|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##DQ895073|COX10|1352|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)##CR541931|PMP22|5376|peripheral myelin protein 22##CR541953|PMP22|5376|peripheral myelin protein 22##M94048|PMP22|5376|peripheral myelin protein 22##NM_153322|PMP22|5376|peripheral myelin protein 22##S61788|PMP22|5376|peripheral myelin protein 22##AK300690|PMP22|5376|peripheral myelin protein 22##L03203|PMP22|5376|peripheral myelin protein 22##AK290640|PMP22|5376|peripheral myelin protein 22##BC019040|PMP22|5376|peripheral myelin protein 22	0.0	0.0	
chr17	26384729	26384822	reg1011526.p2	3.887	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-14774	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-15122	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-164384	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	261418	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	277711	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	277928	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.0	0.0	
chr2	10884665	10884776	reg1014288.p1	3.887	+	TSC_hg19_v1_chr2_+_10861755 NM_001039362 NM_144583 AK292952	-22945	+	TSC_hg19_v1_chr2_-_10830102 NM_024894	-54601	-	CU675005 TSC_hg19_v1_chr2_-_10830078 AK290680 AK024000 BC005125 AK024137 AK297169 AK299617	-54676	-	TSC_hg19_v1_chr2_-_10942759 AK225496 U79278	57984	-	TSC_hg19_v1_chr2_-_10952851 DQ891186 DQ894369 AK289428	68108	-	TSC_hg19_v1_chr2_-_10952912 AK294347 D49489 BC001312 NM_005742	68200	-	NM_001039362|ATP6V1C2|245973|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2##NM_144583|ATP6V1C2|245973|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2##AK292952|ATP6V1C2|245973|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2##NM_024894|NOL10|79954|nucleolar protein 10##AK290680|NOL10|79954|nucleolar protein 10##AK024000|NOL10|79954|nucleolar protein 10##BC005125|NOL10|79954|nucleolar protein 10##AK024137|NOL10|79954|nucleolar protein 10##AK297169|NOL10|79954|nucleolar protein 10##AK299617|NOL10|79954|nucleolar protein 10##AK225496|PDIA6|10130|protein disulfide isomerase family A, member 6##U79278|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ891186|PDIA6|10130|protein disulfide isomerase family A, member 6##DQ894369|PDIA6|10130|protein disulfide isomerase family A, member 6##AK289428|PDIA6|10130|protein disulfide isomerase family A, member 6##AK294347|PDIA6|10130|protein disulfide isomerase family A, member 6##D49489|PDIA6|10130|protein disulfide isomerase family A, member 6##BC001312|PDIA6|10130|protein disulfide isomerase family A, member 6##NM_005742|PDIA6|10130|protein disulfide isomerase family A, member 6	1.839532	0.0	denovo_WM_7:65:0.456	denovo_WM_7:82:0.227	denovo_WM_7:83:0.228	denovo_WM_7:84:0.246	denovo_WM_7:85:0.246
chr2	203142864	203142955	reg1015591.p1	3.887	+	TSC_hg19_v1_chr2_+_203130493 BC018805 BC009306 BC032592 NM_015934 DQ890868 EU176490 AB528451 CU689436 AF123534 AF263608	-12337	+	TSC_hg19_v1_chr2_+_203130458 AK300844 AK307396 AL117554 BC001707	-12453	+	X99586 TSC_hg19_v1_chr2_-_203103288 U38784 U67122 BC053528 AK311840 BC005899 AB062294 BC066306 BC006462 U83117 U61397 NM_001005781 NM_001005782 NM_003352	-39641	-	TSC_hg19_v1_chr2_+_203241049 NM_001204	98137	+	TSC_hg19_v1_chr2_+_203499703 AK096090	356780	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	356950	+	BC018805|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC009306|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC032592|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##NM_015934|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##DQ890868|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##EU176490|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF123534|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AF263608|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK300844|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AK307396|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##AL117554|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##BC001707|NOP58|51602|NOP58 ribonucleoprotein homolog (yeast)##X99586|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U38784|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U67122|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC053528|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AK311840|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC005899|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##AB062294|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC066306|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##BC006462|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U83117|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##U61397|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005781|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001005782|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_003352|SUMO1|7341|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)##NM_001204|BMPR2|659|bone morphogenetic protein receptor, type II (serine/threonine kinase)##AK096090|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B	0.0	0.0	
chr2	215439788	215439856	reg1017206.p1	3.887	+	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	-163362	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-1290665	+	AK124960 NM_001242575	-1290894	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	234537	-	AY033486 NM_015657	456987	-	BC144073 AY219711 NM_173076	563287	-	BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	0.995633	0.0	
chr4	9423664	9423742	reg1010719.p1	3.887	+	BC100993 AY509884 BC100991 BC100992 NM_001105662 NM_001242326 NM_001242327 NM_001242328 NM_001242329 NM_001242330 NM_001242331 NM_001242332	-58850	+	AF544012 BC100991 NM_001105662	-63595	+	BC100993 AF544011 AF544012 AY509884 BC100991 BC100992 NM_001105662 NM_001242326 NM_001242327 NM_001242328 NM_001242329 NM_001242330 NM_001242331 NM_001242332	-68341	+	AF529414 NM_001040448	22556	+	NM_000798	359554	+	TSC_hg19_v1_chr4_-_10023140 AF210317 NM_020041 BC110414	599421	-	BC100993|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_001242326|LOC728373|728373|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242327|LOC728369|728369|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242328|LOC728379|728379|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242329|USP17L5|728386|ubiquitin specific peptidase 17-like 5##NM_001242330|LOC728393|728393|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242331|LOC728400|728400|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242332|LOC728405|728405|ubiquitin carboxyl-terminal hydrolase 17-like##AF544012|USP17|391627|ubiquitin specific peptidase 17##BC100991|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##BC100993|USP17|391627|ubiquitin specific peptidase 17##AF544011|USP17|391627|ubiquitin specific peptidase 17##AF544012|USP17|391627|ubiquitin specific peptidase 17##AY509884|USP17L2|377630|ubiquitin specific peptidase 17-like 2##BC100991|USP17|391627|ubiquitin specific peptidase 17##BC100992|USP17|391627|ubiquitin specific peptidase 17##NM_001105662|USP17|391627|ubiquitin specific peptidase 17##NM_001242326|LOC728373|728373|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242327|LOC728369|728369|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242328|LOC728379|728379|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242329|USP17L5|728386|ubiquitin specific peptidase 17-like 5##NM_001242330|LOC728393|728393|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242331|LOC728400|728400|ubiquitin carboxyl-terminal hydrolase 17-like##NM_001242332|LOC728405|728405|ubiquitin carboxyl-terminal hydrolase 17-like##AF529414|DEFB131|644414|defensin, beta 131##NM_001040448|DEFB131|644414|defensin, beta 131##NM_000798|DRD5|1816|dopamine receptor D5##AF210317|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##NM_020041|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9##BC110414|SLC2A9|56606|solute carrier family 2 (facilitated glucose transporter), member 9	1.633947	0.0	denovo_WM_7:-37:0.536	denovo_WM_7:-52:0.676
chr7	104657767	104657914	reg1012140.p1	3.887	+	TSC_hg19_v1_chr7_+_104654651 AY147037 NM_018682 NM_182931 BC053906 BC062583 BC009061 BC001296 BC142987 BC040004 AF519459 AK000940 BC040848	-3066	+	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	-3338	-	TSC_hg19_v1_chr7_-_104654062 AK094372	-3766	-	TSC_hg19_v1_chr7_+_104681423 AY157990	23574	+	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	94538	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	251643	-	AY147037|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_018682|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182931|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC053906|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC062583|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC009061|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC001296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC142987|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC040004|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AF519459|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AK000940|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC040848|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2	2.036449	0.0	denovo_WM_7:42:0.549	denovo_WM_7:89:0.975
chr1	248812494	248812592	reg1014928.p2	3.886	+	NM_001001827 AB528813	-9984	-	NM_001001964 BC140749	-22084	-	NM_001004693 BC136937 BC136940	-55460	-	NM_001001824	1641	-	NM_001004734 BC137188 BC137189	33073	-	AY358453 TSC_hg19_v1_chr1_-_249120082 AK056382 NM_030645	307565	-	NM_001001827|OR2T35|403244|olfactory receptor, family 2, subfamily T, member 35##NM_001001964|OR2T11|127077|olfactory receptor, family 2, subfamily T, member 11##BC140749|OR2T11|127077|olfactory receptor, family 2, subfamily T, member 11##NM_001004693|OR2T10|127069|olfactory receptor, family 2, subfamily T, member 10##BC136937|OR2T10|127069|olfactory receptor, family 2, subfamily T, member 10##BC136940|OR2T10|127069|olfactory receptor, family 2, subfamily T, member 10##NM_001001824|OR2T27|403239|olfactory receptor, family 2, subfamily T, member 27##NM_001004734|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##BC137188|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##BC137189|OR14I1|401994|olfactory receptor, family 14, subfamily I, member 1##AY358453|SH3BP5L|80851|SH3-binding domain protein 5-like##AK056382|SH3BP5L|80851|SH3-binding domain protein 5-like##NM_030645|SH3BP5L|80851|SH3-binding domain protein 5-like	0.011903	0.0	
chr12	8801497	8801564	reg1010637.p2	3.886	+	AB040431 BC006296 NM_020661	-36091	-	CU674354 BC000715 AY358499 AB024718 NM_014358 AK312671	-108056	-	BC032313 NM_080387 AY297446 AY115592 AK314071 AF411850 AY486482 AY486483 DQ891244 DQ894429	-135299	+	TSC_hg19_v1_chr12_-_8815272 AK315807 BC005901 AK290585 AK299475	13766	-	TSC_hg19_v1_chr12_-_8815423 U37283 NM_003480	13871	-	AK124368 TSC_hg19_v1_chr12_-_8815486	13952	-	AB040431|AICDA|57379|activation-induced cytidine deaminase##BC006296|AICDA|57379|activation-induced cytidine deaminase##NM_020661|AICDA|57379|activation-induced cytidine deaminase##BC000715|CLEC4E|26253|C-type lectin domain family 4, member E##AY358499|CLEC4E|26253|C-type lectin domain family 4, member E##AB024718|CLEC4E|26253|C-type lectin domain family 4, member E##NM_014358|CLEC4E|26253|C-type lectin domain family 4, member E##AK312671|CLEC4E|26253|C-type lectin domain family 4, member E##BC032313|CLEC4D|338339|C-type lectin domain family 4, member D##NM_080387|CLEC4D|338339|C-type lectin domain family 4, member D##AY297446|CLEC4D|338339|C-type lectin domain family 4, member D##AY115592|CLEC4D|338339|C-type lectin domain family 4, member D##AK314071|CLEC4D|338339|C-type lectin domain family 4, member D##AF411850|CLEC4D|338339|C-type lectin domain family 4, member D##AY486482|CLEC4D|338339|C-type lectin domain family 4, member D##AY486483|CLEC4D|338339|C-type lectin domain family 4, member D##DQ894429|CLEC4D|338339|C-type lectin domain family 4, member D##AK315807|MFAP5|8076|microfibrillar associated protein 5##BC005901|MFAP5|8076|microfibrillar associated protein 5##AK290585|MFAP5|8076|microfibrillar associated protein 5##AK299475|MFAP5|8076|microfibrillar associated protein 5##U37283|MFAP5|8076|microfibrillar associated protein 5##NM_003480|MFAP5|8076|microfibrillar associated protein 5##AK124368|MFAP5|8076|microfibrillar associated protein 5	0.0	0.0	
chr1	47901536	47901609	reg1000978.p2	3.886	+	AF275722 NM_012186	-19829	+	TSC_hg19_v1_chr1_+_47799646 AF259961	-101931	+	TSC_hg19_v1_chr1_+_47799615 BC017806 AF087865 AF112216 AF110643 AK223014 AK294294 AK298502 AF070416 AK025258 AK293238 AK312693 BC014961 AB528698 DQ892213 DQ895408 DQ895409	-102020	+	AF042832 NM_004474	116	+	NM_001194986	560989	-	BC104857 BC104863 BC143570 BC143587 NM_001011547 NM_001135181 BC143572 TSC_hg19_v1_chr1_+_48688387 BC048332 AK131200 BX648549 AK296133	786820	+	AF275722|FOXE3|2301|forkhead box E3##NM_012186|FOXE3|2301|forkhead box E3##AF259961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC017806|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF087865|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF112216|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF110643|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK223014|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK294294|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK298502|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF070416|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK025258|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK293238|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AK312693|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##BC014961|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ892213|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895408|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##DQ895409|CMPK1|51727|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic##AF042832|FOXD2|2306|forkhead box D2##NM_004474|FOXD2|2306|forkhead box D2##NM_001194986|LOC388630|388630|UPF0632 protein A##BC104857|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC104863|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143570|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143587|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001011547|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##NM_001135181|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC143572|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BC048332|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK131200|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##BX648549|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9##AK296133|SLC5A9|200010|solute carrier family 5 (sodium/glucose cotransporter), member 9	0.0	0.0	
chr15	44583297	44583375	reg1014215.p1	3.886	+	TSC_hg19_v1_chr15_+_44581110 AK298564 AL832333 AK291026 CU680228 CU687742	-2201	+	BC063480 AY358086 TSC_hg19_v1_chr15_+_44580965	-2377	+	AK098265 TSC_hg19_v1_chr15_+_44580937	-2395	+	NM_016396	136242	+	TSC_hg19_v1_chr15_+_44719826 AK291230 AF161478 AF161543	136460	+	TSC_hg19_v1_chr15_+_44719836 BC018623 AK226094 DQ128104 BC035744	136574	+	AK298564|CASC4|113201|cancer susceptibility candidate 4##AL832333|CASC4|113201|cancer susceptibility candidate 4##AK291026|CASC4|113201|cancer susceptibility candidate 4##BC063480|CASC4|113201|cancer susceptibility candidate 4##AY358086|CASC4|113201|cancer susceptibility candidate 4##AK098265|CASC4|113201|cancer susceptibility candidate 4##NM_016396|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK291230|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161478|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AF161543|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC018623|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##AK226094|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##DQ128104|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2##BC035744|CTDSPL2|51496|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	0.993198	0.0	
chr17	43391948	43392094	reg1001819.p1	3.886	+	BC028124 AF433663 AK302184 AK058143 NM_152343	-52566	-	TSC_hg19_v1_chr17_+_43325300 AK311429	-66717	+	AK096807 TSC_hg19_v1_chr17_-_43319268	-72825	-	TSC_hg19_v1_chr17_-_43394387 BC035576 BC022296 AK290203 AK313085 NM_003954	2354	-	TSC_hg19_v1_chr17_-_43487753 AK092891 AX747793 AK300880	95729	-	TSC_hg19_v1_chr17_-_43503000 AK125535 NM_199282	110980	-	BC028124|C17orf46|124783|chromosome 17 open reading frame 46##AF433663|C17orf46|124783|chromosome 17 open reading frame 46##AK302184|C17orf46|124783|chromosome 17 open reading frame 46##AK058143|C17orf46|124783|chromosome 17 open reading frame 46##NM_152343|C17orf46|124783|chromosome 17 open reading frame 46##AK311429|LOC100133991|100133991|uncharacterized LOC100133991##BC035576|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC022296|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK290203|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK313085|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##NM_003954|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK092891|ARHGAP27|201176|Rho GTPase activating protein 27##AK300880|ARHGAP27|201176|Rho GTPase activating protein 27##AK125535|ARHGAP27|201176|Rho GTPase activating protein 27##NM_199282|ARHGAP27|201176|Rho GTPase activating protein 27	0.999008	0.0	denovo_WM_7:-26:0.555	denovo_WM_7:-27:0.358
chr19	6580314	6580380	reg1015038.p1	3.886	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	-49321	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-78030	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-98564	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	10685	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	10759	-	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	10811	-	NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule	0.998443	0.0	denovo_WM_7:36:0.747
chr21	26952095	26952210	reg1017359.p1	3.886	+	TSC_hg19_v1_chr21_+_26934442 AF402776	-17680	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1151084	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4581379	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	27663	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	59501	+	TSC_hg19_v1_chr21_+_27011769 AK312708 AY077698 AY016009 AX772824 AK294769	59685	+	AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2##AK312708|JAM2|58494|junctional adhesion molecule 2##AY077698|JAM2|58494|junctional adhesion molecule 2##AY016009|JAM2|58494|junctional adhesion molecule 2##AX772824|JAM2|58494|junctional adhesion molecule 2##AK294769|JAM2|58494|junctional adhesion molecule 2	1.041155	0.0	
chr3	180312871	180312957	reg1017391.p2	3.886	+	AB032593 NM_016559 AB032592 TSC_hg19_v1_chr3_-_179754937 AK299633 AK294501 AK314283 BC036183	-558188	-	TSC_hg19_v1_chr3_+_179370901 NM_003940 U75362 BC016146 AK290338 AM393315 AM393392 AM393610 AM393780 DQ892472 DQ895684	-942019	+	TSC_hg19_v1_chr3_+_179322594 NM_001199957 NM_001199958 NM_002492 BX648034 BC005271 BC009796 AK313822 AF047181 BC093071 BC017909 CU679497	-990321	+	TSC_hg19_v1_chr3_+_180319985 NM_001042601 NM_133462 AK055984 AL832052 AL833086 BX648669 BC027990 AL833103 AY358762 AK074095 EU832789 GQ129409 CU693360	7089	+	AB075860 TSC_hg19_v1_chr3_+_180320970	8049	+	AK304270 NM_181426	84357	-	AB032593|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_016559|PEX5L|51555|peroxisomal biogenesis factor 5-like##AB032592|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK299633|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK294501|PEX5L|51555|peroxisomal biogenesis factor 5-like##AK314283|PEX5L|51555|peroxisomal biogenesis factor 5-like##BC036183|PEX5L|51555|peroxisomal biogenesis factor 5-like##NM_003940|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##U75362|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##BC016146|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AK290338|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393315|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393392|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393610|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##AM393780|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ892472|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##DQ895684|USP13|8975|ubiquitin specific peptidase 13 (isopeptidase T-3)##NM_001199957|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_001199958|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_002492|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BX648034|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC005271|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC009796|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AK313822|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##AF047181|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC093071|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##BC017909|NDUFB5|4711|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa##NM_001042601|TTC14|151613|tetratricopeptide repeat domain 14##NM_133462|TTC14|151613|tetratricopeptide repeat domain 14##AK055984|TTC14|151613|tetratricopeptide repeat domain 14##AL832052|TTC14|151613|tetratricopeptide repeat domain 14##AL833086|TTC14|151613|tetratricopeptide repeat domain 14##BX648669|TTC14|151613|tetratricopeptide repeat domain 14##BC027990|TTC14|151613|tetratricopeptide repeat domain 14##AL833103|TTC14|151613|tetratricopeptide repeat domain 14##AY358762|TTC14|151613|tetratricopeptide repeat domain 14##EU832789|TTC14|151613|tetratricopeptide repeat domain 14##GQ129409|TTC14|151613|tetratricopeptide repeat domain 14##AB075860|TTC14|151613|tetratricopeptide repeat domain 14##AK304270|CCDC39|339829|coiled-coil domain containing 39##NM_181426|CCDC39|339829|coiled-coil domain containing 39	0.0	0.038458	
chr4	157378107	157378227	reg1016164.p1	3.886	+	TSC_hg19_v1_chr4_-_156875035 CU690602 BC049206 AK312354 X77383 NM_001334 AK308323	-503119	-	NM_005651 U32989 TSC_hg19_v1_chr4_+_156824847 AK289418 AK307741 BC005355 EU831460 EU831547 CU675137	-553290	+	AB528059 AJ252011 NM_017419	-590767	-	AB590688 BC051876 BC094746 AF260738 AK300480 AF244813 AK313817 BC041783 BC065490 TSC_hg19_v1_chr4_-_157892334 AM922296 AB033831	514050	-	BC136662 BC144348 TSC_hg19_v1_chr4_-_157892489	514311	-	AF091434 NM_016205 TSC_hg19_v1_chr4_-_157892573	514392	-	BC049206|CTSO|1519|cathepsin O##AK312354|CTSO|1519|cathepsin O##X77383|CTSO|1519|cathepsin O##NM_001334|CTSO|1519|cathepsin O##AK308323|CTSO|1519|cathepsin O##NM_005651|TDO2|6999|tryptophan 2,3-dioxygenase##U32989|TDO2|6999|tryptophan 2,3-dioxygenase##AK289418|TDO2|6999|tryptophan 2,3-dioxygenase##AK307741|TDO2|6999|tryptophan 2,3-dioxygenase##BC005355|TDO2|6999|tryptophan 2,3-dioxygenase##EU831460|TDO2|6999|tryptophan 2,3-dioxygenase##EU831547|TDO2|6999|tryptophan 2,3-dioxygenase##AJ252011|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal##NM_017419|ACCN5|51802|amiloride-sensitive cation channel 5, intestinal##BC051876|PDGFC|56034|platelet derived growth factor C##BC094746|PDGFC|56034|platelet derived growth factor C##AF260738|PDGFC|56034|platelet derived growth factor C##AK300480|PDGFC|56034|platelet derived growth factor C##AF244813|PDGFC|56034|platelet derived growth factor C##AK313817|PDGFC|56034|platelet derived growth factor C##BC041783|PDGFC|56034|platelet derived growth factor C##AM922296|PDGFC|56034|platelet derived growth factor C##AB033831|PDGFC|56034|platelet derived growth factor C##BC136662|PDGFC|56034|platelet derived growth factor C##BC144348|PDGFC|56034|platelet derived growth factor C##AF091434|PDGFC|56034|platelet derived growth factor C##NM_016205|PDGFC|56034|platelet derived growth factor C	0.991568	0.0	denovo_WM_7:0:0.241	denovo_WM_7:0:0.621
chr7	102382874	102382992	reg1005101.p1	3.886	+	BC056864 BC071870 TSC_hg19_v1_chr7_-_102312111 BC044209 BC050598 BC110985 BC086857 NM_032959	-70813	-	AK302217 NM_001031618 NM_001166339	-92162	+	EU341824 NM_001114403 AK296589	-99657	-	TSC_hg19_v1_chr7_+_102389473 NM_001145268 NM_001145269 BC029175 AK297455 AK298753 AK054745 DQ893359 DQ896678	6557	+	NM_001031692 NM_005824 TSC_hg19_v1_chr7_+_102553446 AK226021 AK225701 U32907 AK290305 BC027903 AY358889	170499	+	AK097537 NM_145032	332081	-	BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC086857|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_032959|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##EU341824|UPK3BL|100134938|uroplakin 3B-like##NM_001114403|UPK3BL|100134938|uroplakin 3B-like##NM_001145268|FAM185A|222234|family with sequence similarity 185, member A##NM_001145269|FAM185A|222234|family with sequence similarity 185, member A##BC029175|FAM185A|222234|family with sequence similarity 185, member A##AK297455|FAM185A|222234|family with sequence similarity 185, member A##AK298753|FAM185A|222234|family with sequence similarity 185, member A##AK054745|FAM185A|222234|family with sequence similarity 185, member A##DQ893359|FAM185A|222234|family with sequence similarity 185, member A##DQ896678|FAM185A|222234|family with sequence similarity 185, member A##NM_001031692|LRRC17|10234|leucine rich repeat containing 17##NM_005824|LRRC17|10234|leucine rich repeat containing 17##AK226021|LRRC17|10234|leucine rich repeat containing 17##AK225701|LRRC17|10234|leucine rich repeat containing 17##U32907|LRRC17|10234|leucine rich repeat containing 17##AK290305|LRRC17|10234|leucine rich repeat containing 17##BC027903|LRRC17|10234|leucine rich repeat containing 17##AY358889|LRRC17|10234|leucine rich repeat containing 17##AK097537|FBXL13|222235|F-box and leucine-rich repeat protein 13##NM_145032|FBXL13|222235|F-box and leucine-rich repeat protein 13	0.402696	0.0	denovo_WM_7:18:0.324
chr11	60114868	60114953	reg1003207.p1	3.885	+	BC101783 AF333758 AF354931 BC069322 NM_139249 GQ129453 GQ129454 AF354933 BC034588 AF354932	-12528	+	NM_001243266 NM_024021 NM_148975 AK292089 AK075081 TSC_hg19_v1_chr11_+_60048138 BC020648 CU676600 DQ891395 DQ894573 AB022821 AK314033 AB013102	-66817	+	AK291870 NM_001247999 NM_152852	-162772	-	AK075106 NM_021201 NM_206938 NM_206939 NM_206940 AK297027 TSC_hg19_v1_chr11_+_60146004 BC043485 AF309653 AK309884	31077	+	TSC_hg19_v1_chr11_+_60146063 BC020673 AF237916 AF201951 AF350501	31149	+	NM_001079692 NM_032597	48576	+	BC101783|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF333758|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354931|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC069322|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##NM_139249|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129453|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##GQ129454|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354933|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##BC034588|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##AF354932|MS4A6E|245802|membrane-spanning 4-domains, subfamily A, member 6E##NM_001243266|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_024021|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##NM_148975|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK292089|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK075081|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##BC020648|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ891395|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##DQ894573|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB022821|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK314033|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AB013102|MS4A4A|51338|membrane-spanning 4-domains, subfamily A, member 4##AK291870|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_001247999|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##NM_152852|MS4A6A|64231|membrane-spanning 4-domains, subfamily A, member 6A##AK075106|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_021201|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206938|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206939|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_206940|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK297027|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF309653|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AK309884|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##BC020673|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF237916|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF201951|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##AF350501|MS4A7|58475|membrane-spanning 4-domains, subfamily A, member 7##NM_001079692|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14##NM_032597|MS4A14|84689|membrane-spanning 4-domains, subfamily A, member 14	0.0	0.0	
chr1	55803883	55803984	reg1017838.p1	3.885	+	TSC_hg19_v1_chr1_+_55681088 BC040313	-122849	+	TSC_hg19_v1_chr1_-_55681045 NM_015306	-122897	-	TSC_hg19_v1_chr1_+_55505220 AK075365	-298709	+	AF043329 TSC_hg19_v1_chr1_-_57045054 BC009196	1241086	-	AF017786 U79294 AF480883 TSC_hg19_v1_chr1_-_57045132	1241197	-	AK312439 TSC_hg19_v1_chr1_-_57045216	1241284	-	BC040313|LOC100507634|100507634|uncharacterized LOC100507634##NM_015306|USP24|23358|ubiquitin specific peptidase 24##AK075365|PCSK9|255738|proprotein convertase subtilisin/kexin type 9##AF043329|PPAP2B|8613|phosphatidic acid phosphatase type 2B##BC009196|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF017786|PPAP2B|8613|phosphatidic acid phosphatase type 2B##U79294|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AF480883|PPAP2B|8613|phosphatidic acid phosphatase type 2B##AK312439|PPAP2B|8613|phosphatidic acid phosphatase type 2B	0.0	0.980502	CTCF.p2:43:0.981
chr15	89723467	89723597	reg1015998.p1	3.885	+	TSC_hg19_v1_chr15_+_89631738 X12433	-91795	+	TSC_hg19_v1_chr15_+_89631708 AL110291 AK222841 AK290340 AK223083 AK296827	-91829	+	TSC_hg19_v1_chr15_+_89631652 BC090052 AF546700 BC019248	-91884	+	AL109729 TSC_hg19_v1_chr15_+_89739320	15746	+	AK312457 BC004199 NM_000326 DQ980611	41374	-	TSC_hg19_v1_chr15_+_89787197 NM_001113378 NM_018193 BC146804	63661	+	X12433|ABHD2|11057|abhydrolase domain containing 2##AL110291|ABHD2|11057|abhydrolase domain containing 2##AK222841|ABHD2|11057|abhydrolase domain containing 2##AK290340|ABHD2|11057|abhydrolase domain containing 2##AK223083|ABHD2|11057|abhydrolase domain containing 2##AK296827|ABHD2|11057|abhydrolase domain containing 2##BC090052|ABHD2|11057|abhydrolase domain containing 2##AF546700|ABHD2|11057|abhydrolase domain containing 2##BC019248|ABHD2|11057|abhydrolase domain containing 2##AL109729|ABHD2|11057|abhydrolase domain containing 2##AK312457|RLBP1|6017|retinaldehyde binding protein 1##BC004199|RLBP1|6017|retinaldehyde binding protein 1##NM_000326|RLBP1|6017|retinaldehyde binding protein 1##DQ980611|RLBP1|6017|retinaldehyde binding protein 1##NM_001113378|FANCI|55215|Fanconi anemia, complementation group I##NM_018193|FANCI|55215|Fanconi anemia, complementation group I##BC146804|FANCI|55215|Fanconi anemia, complementation group I	0.246402	0.0	
chr2	207110347	207110477	reg1000497.p1	3.885	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	-27714	-	TSC_hg19_v1_chr2_+_207024617 AK291910 AK310096 D28350 BC067787 BC029316 BC004931 AB529032 CU688340 BT007079 CR456825	-85754	+	S81522 X60656 TSC_hg19_v1_chr2_+_207024348 BC000211 X60489	-86013	+	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	29055	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	197921	+	AK129906 TSC_hg19_v1_chr2_+_207406857	296424	+	AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK291910|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK310096|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##D28350|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC067787|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC029316|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC004931|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BT007079|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##CR456825|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##S81522|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60656|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC000211|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60489|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23##AK129906|ADAM23|8745|ADAM metallopeptidase domain 23	0.999243	0.0	
chr5	112264916	112265096	reg1011990.p1	3.885	+	CU688102 AY562243 BC065926 TSC_hg19_v1_chr5_-_112257925 BC000232 M74090 AK295436 AK298268 AK299902 AK300048 AK312522 M73547 AX775929 BX648005 NM_005669	-7019	-	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	-67982	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	-68077	+	TSC_hg19_v1_chr5_+_112312407 NM_001242377 NM_152624	47399	+	TSC_hg19_v1_chr5_+_112312506 AY135173 AY146650 BC017965 AK296361 AK090564 AX746512 BC064593 BC068042 CU687920	47522	+	M62397 AK096212 TSC_hg19_v1_chr5_-_112630346	365319	-	AY562243|REEP5|7905|receptor accessory protein 5##BC065926|REEP5|7905|receptor accessory protein 5##BC000232|REEP5|7905|receptor accessory protein 5##M74090|REEP5|7905|receptor accessory protein 5##AK295436|REEP5|7905|receptor accessory protein 5##AK298268|REEP5|7905|receptor accessory protein 5##AK299902|REEP5|7905|receptor accessory protein 5##AK312522|REEP5|7905|receptor accessory protein 5##BX648005|REEP5|7905|receptor accessory protein 5##NM_005669|REEP5|7905|receptor accessory protein 5##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##NM_001242377|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##NM_152624|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY135173|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AY146650|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC017965|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK296361|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##AK090564|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC064593|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##BC068042|DCP2|167227|DCP2 decapping enzyme homolog (S. cerevisiae)##M62397|MCC|4163|mutated in colorectal cancers##AK096212|MCC|4163|mutated in colorectal cancers	0.999537	0.0	
chr6	145943110	145943182	reg1009001.p2	3.885	+	NM_007124 X69086	-1330228	+	TSC_hg19_v1_chr6_+_144607461 AK292506	-1335666	+	TSC_hg19_v1_chr6_+_144471653 NM_003764 AF044309 BC033519 AF071504	-1471425	+	AK124757 TSC_hg19_v1_chr6_+_146056061	112888	+	TSC_hg19_v1_chr6_-_146056437 AJ130763 AJ130764	113267	-	AF454494 TSC_hg19_v1_chr6_-_146056628 AF454493 BC005286 AF084535	113455	-	NM_007124|UTRN|7402|utrophin##X69086|UTRN|7402|utrophin##AK292506|UTRN|7402|utrophin##NM_003764|STX11|8676|syntaxin 11##AF044309|STX11|8676|syntaxin 11##BC033519|STX11|8676|syntaxin 11##AF071504|STX11|8676|syntaxin 11##AK124757|LOC100507557|100507557|uncharacterized LOC100507557##AJ130763|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AJ130764|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454494|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF454493|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##BC005286|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)##AF084535|EPM2A|7957|epilepsy, progressive myoclonus type 2A, Lafora disease (laforin)	0.0	0.0	
chr6	91183655	91183758	reg1015815.p1	3.885	+	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-177094	-	AJ271878 TSC_hg19_v1_chr6_-_91006556 NM_021813	-177195	-	AB527151 AF296766 NM_032602	-579520	+	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	112977	-	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	113132	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	2945477	-	AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AJ271878|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_021813|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##AF296766|GJA10|84694|gap junction protein, alpha 10, 62kDa##NM_032602|GJA10|84694|gap junction protein, alpha 10, 62kDa##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7	0.0	0.0	
chr7	102266407	102266526	reg1011316.p1	3.885	+	TSC_hg19_v1_chr7_-_102257205 AK026441 AK310176 NM_001079877 NM_006989 AY029206	-9242	-	HQ258652 BC110873 TSC_hg19_v1_chr7_-_102257170 AB011110 BC113663 BC143584 BC143585 AK308653	-9309	-	AF468111 BC110985 TSC_hg19_v1_chr7_-_102213031 AB209398 BC141857 AK309487 NM_001097615	-53426	-	EU341824 NM_001114403 AK296589	16810	-	AK302217 NM_001031618 NM_001166339	24305	+	BC056864 BC071870 TSC_hg19_v1_chr7_-_102312111 BC044209 BC050598 BC110985 BC086857 NM_032959	45654	-	AK026441|RASA4|10156|RAS p21 protein activator 4##AK310176|RASA4|10156|RAS p21 protein activator 4##NM_001079877|RASA4|10156|RAS p21 protein activator 4##NM_006989|RASA4|10156|RAS p21 protein activator 4##HQ258652|RASA4|10156|RAS p21 protein activator 4##BC110873|RASA4|10156|RAS p21 protein activator 4##AB011110|RASA4|10156|RAS p21 protein activator 4##BC113663|RASA4|10156|RAS p21 protein activator 4##BC143584|RASA4|10156|RAS p21 protein activator 4##BC143585|RASA4|10156|RAS p21 protein activator 4##AK308653|RASA4|10156|RAS p21 protein activator 4##AF468111|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##AB209398|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_001097615|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##EU341824|UPK3BL|100134938|uroplakin 3B-like##NM_001114403|UPK3BL|100134938|uroplakin 3B-like##AK302217|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001031618|SPDYE2|441273|speedy homolog E2 (Xenopus laevis)##NM_001166339|SPDYE2L|100310812|WBSCR19-like protein 3##BC056864|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC071870|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC044209|POLR2J3|548644|polymerase (RNA) II (DNA directed) polypeptide J3##BC050598|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC110985|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##BC086857|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2##NM_032959|POLR2J2|246721|polymerase (RNA) II (DNA directed) polypeptide J2	1.137383	0.0	denovo_WM_7:75:0.217
chr7	1546762	1546871	reg1012079.p2	3.885	+	TSC_hg19_v1_chr7_-_1544019 AK093809 AX748318 NM_001080453	-2783	-	TSC_hg19_v1_chr7_-_1499107 AK027124 NM_182924	-47709	-	CU691530 EU832111 EU832205 AK074068 BC037988 TSC_hg19_v1_chr7_-_1499102	-47783	-	TSC_hg19_v1_chr7_+_1570337 AF059194 NM_002360	23528	+	TSC_hg19_v1_chr7_+_1577118 AK092414	30306	+	TSC_hg19_v1_chr7_+_1580027 BC143040 BC143041 BC148194	33213	+	NM_001080453|INTS1|26173|integrator complex subunit 1##AK027124|MICALL2|79778|MICAL-like 2##NM_182924|MICALL2|79778|MICAL-like 2##EU832111|MICALL2|79778|MICAL-like 2##EU832205|MICALL2|79778|MICAL-like 2##AK074068|MICALL2|79778|MICAL-like 2##BC037988|MICALL2|79778|MICAL-like 2##AF059194|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##NM_002360|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##AK092414|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC143040|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC143041|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)##BC148194|MAFK|7975|v-maf musculoaponeurotic fibrosarcoma oncogene homolog K (avian)	0.986532	0.0	denovo_WM_7:28:0.921
chr7	20347123	20347253	reg1014227.p2	3.885	+	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	-90208	-	BX648384 NM_152774	-534785	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-598542	-	AK295044 TSC_hg19_v1_chr7_+_20370337	23149	+	BC002630 NM_002214 M73780	23546	+	AB353947 NM_001163941 AY230001	308109	+	BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8##AB353947|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5##NM_001163941|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5##AY230001|ABCB5|340273|ATP-binding cassette, sub-family B (MDR/TAP), member 5	0.999919	0.0	denovo_WM_7:-12:0.250	denovo_WM_7:-13:0.644
chr7	92251250	92251369	reg1012047.p1	3.885	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-31611	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-31667	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-93203	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	211458	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	211911	-	AK313491 TSC_hg19_v1_chr7_-_92465884	214589	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.996652	0.0	denovo_WM_7:20:0.919
chr8	119517219	119517399	reg1001353.p1	3.885	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-393348	-	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	-984267	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	-984351	+	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	116816	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	116898	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	446911	-	AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##NM_080651|MED30|90390|mediator complex subunit 30##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b	0.0	0.0	
chr9	2060081	2060167	reg1015164.p1	3.885	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-44828	+	AF130729 NM_181872	-1009515	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-1009754	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	561683	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	561950	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	561988	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	1.994223	0.0	denovo_WM_7:2:0.496	denovo_WM_7:3:0.332	denovo_WM_7:18:0.328	denovo_WM_7:19:0.492
chrX	19790073	19790184	reg1013924.p1	3.885	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-101072	-	NM_001001671	-256750	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-428046	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	27747	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	27784	-	TSC_hg19_v1_chrX_-_19905450 AY542305	115335	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.047419	0.0	denovo_WM_7:-82:0.715	denovo_WM_7:-83:0.241
chr11	16653903	16653999	reg1014058.p2	3.884	+	AF309034 NM_033326	-156026	-	BC037866 NM_001145811	-223524	-	AL136780 AK310506 BC047064 NM_001145819 NM_017508	-229550	-	NM_014267 TSC_hg19_v1_chr11_+_16760165	106209	+	TSC_hg19_v1_chr11_+_16760204 BC103747 AK315382 BC007103 BC016352 BC020937 U51678 CR456882 CU675547 AK124165	106333	+	TSC_hg19_v1_chr11_-_16996590 D28414	342625	-	AF309034|SOX6|55553|SRY (sex determining region Y)-box 6##NM_033326|SOX6|55553|SRY (sex determining region Y)-box 6##BC037866|SOX6|55553|SRY (sex determining region Y)-box 6##NM_001145811|SOX6|55553|SRY (sex determining region Y)-box 6##AL136780|SOX6|55553|SRY (sex determining region Y)-box 6##AK310506|SOX6|55553|SRY (sex determining region Y)-box 6##BC047064|SOX6|55553|SRY (sex determining region Y)-box 6##NM_001145819|SOX6|55553|SRY (sex determining region Y)-box 6##NM_017508|SOX6|55553|SRY (sex determining region Y)-box 6##NM_014267|C11orf58|10944|chromosome 11 open reading frame 58##BC103747|C11orf58|10944|chromosome 11 open reading frame 58##AK315382|C11orf58|10944|chromosome 11 open reading frame 58##BC007103|C11orf58|10944|chromosome 11 open reading frame 58##BC016352|C11orf58|10944|chromosome 11 open reading frame 58##BC020937|C11orf58|10944|chromosome 11 open reading frame 58##U51678|C11orf58|10944|chromosome 11 open reading frame 58##CR456882|C11orf58|10944|chromosome 11 open reading frame 58##D28414|RPL36A|6173|ribosomal protein L36a	0.0	0.784778	CTCF.p2:-15:0.785
chr15	75673257	75673362	reg1004651.p1	3.884	+	AK225145 TSC_hg19_v1_chr15_-_75660949 AK294892 AK301170 AK311065	-12352	-	TSC_hg19_v1_chr15_-_75660937 CU690718 AL136876 BC080191 AK295265 BC050550 BC038594 NM_006715	-12387	-	AB209141 TSC_hg19_v1_chr15_-_75660874	-12448	-	BC137098 BC137099 AF418569 AK027559 NM_015477 BC066364 TSC_hg19_v1_chr15_-_75744028 BX649162	70593	-	TSC_hg19_v1_chr15_-_75744032 AK096477 NM_001145358	70748	-	AL832463 NM_001145357	74814	-	AK225145|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK294892|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK301170|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK311065|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AL136876|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC080191|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AK295265|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC050550|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC038594|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##NM_006715|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##AB209141|MAN2C1|4123|mannosidase, alpha, class 2C, member 1##BC137098|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC137099|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AF418569|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK027559|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_015477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BC066364|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##BX649162|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AK096477|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145358|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##AL832463|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)##NM_001145357|SIN3A|25942|SIN3 transcription regulator homolog A (yeast)	0.0	0.0	
chr16	21719930	21720072	reg1012259.p1	3.884	+	AK093062 AX747895 NM_170664 BC040551 AK302733	-3684	+	AK125840 NM_001161683	-24252	+	BC129993 NM_144672 BC129992	-30166	+	BC009198 BC068999 TSC_hg19_v1_chr16_-_21831777 BC070157	111759	-	AK316459 AK296301 AK303500 AK301703 AK294452 TSC_hg19_v1_chr16_-_21854901	134827	-	NM_003366 AK307535 TSC_hg19_v1_chr16_+_21964618	244627	+	AK093062|OTOA|146183|otoancorin##NM_170664|OTOA|146183|otoancorin##BC040551|OTOA|146183|otoancorin##AK302733|OTOA|146183|otoancorin##AK125840|OTOA|146183|otoancorin##NM_001161683|OTOA|146183|otoancorin##BC129993|OTOA|146183|otoancorin##NM_144672|OTOA|146183|otoancorin##BC129992|OTOA|146183|otoancorin##BC009198|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC068999|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##BC070157|RRN3P1|730092|RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1##AK316459|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296301|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AK303500|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK301703|LOC613037|613037|nuclear pore complex interacting protein pseudogene##AK294452|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_003366|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK307535|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II	0.0	0.959607	CTCF.p2:28:0.960
chr16	58277535	58277670	reg1015474.p2	3.884	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	-45891	-	TSC_hg19_v1_chr16_-_58163286 NM_013242	-114292	-	TSC_hg19_v1_chr16_-_58163283 AK027099 AK297819 BC005152 AF087845 AF093680	-114370	-	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	6266	+	AK302175 AK058068 BC057843 NM_001080492	51312	-	NM_001126129 NM_001126130 NM_022770 TSC_hg19_v1_chr16_+_58426340 AK315622 AK023974 BC014437 BC005879 CR457283	148799	+	DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_013242|C16orf80|29105|chromosome 16 open reading frame 80##AK027099|C16orf80|29105|chromosome 16 open reading frame 80##AK297819|C16orf80|29105|chromosome 16 open reading frame 80##BC005152|C16orf80|29105|chromosome 16 open reading frame 80##AF087845|C16orf80|29105|chromosome 16 open reading frame 80##AF093680|C16orf80|29105|chromosome 16 open reading frame 80##AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54##NM_001126129|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_001126130|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_022770|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK315622|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK023974|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC014437|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC005879|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##CR457283|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)	0.0	0.0	
chr19	39348791	39348885	reg1012414.p2	3.884	+	TSC_hg19_v1_chr19_-_39342988 AK292115 NM_001005335 AK301062	-5862	-	AB587509 TSC_hg19_v1_chr19_-_39340622 AB044547 NM_001533	-8213	-	AK298384 TSC_hg19_v1_chr19_-_39340578	-8262	-	TSC_hg19_v1_chr19_-_39368901 AK127808 AK126119 AK298327 NM_001195833 NM_198445	20072	-	TSC_hg19_v1_chr19_+_39390332 NM_001243116 AB362577	41463	+	TSC_hg19_v1_chr19_-_39390229 AK314492 AB009274 AF160214 AY030277 AF095714 AK025876 AK225824 AK054642 AK094810 BC003012 BC003547 AF083107 NM_012237 NM_001193286 NM_030593	41496	-	AK292115|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001005335|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK301062|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AB044547|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##NM_001533|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK298384|HNRNPL|3191|heterogeneous nuclear ribonucleoprotein L##AK127808|RINL|126432|Ras and Rab interactor-like##AK126119|RINL|126432|Ras and Rab interactor-like##AK298327|RINL|126432|Ras and Rab interactor-like##NM_001195833|RINL|126432|Ras and Rab interactor-like##NM_198445|RINL|126432|Ras and Rab interactor-like##NM_001243116|NFKBIB|4793|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta##AK314492|SIRT2|22933|sirtuin 2##AB009274|SIRT2|22933|sirtuin 2##AF160214|SIRT2|22933|sirtuin 2##AY030277|SIRT2|22933|sirtuin 2##AF095714|SIRT2|22933|sirtuin 2##AK025876|SIRT2|22933|sirtuin 2##AK225824|SIRT2|22933|sirtuin 2##AK054642|SIRT2|22933|sirtuin 2##AK094810|SIRT2|22933|sirtuin 2##BC003012|SIRT2|22933|sirtuin 2##BC003547|SIRT2|22933|sirtuin 2##AF083107|SIRT2|22933|sirtuin 2##NM_012237|SIRT2|22933|sirtuin 2##NM_001193286|SIRT2|22933|sirtuin 2##NM_030593|SIRT2|22933|sirtuin 2	0.991766	0.0	denovo_WM_7:3:0.836
chr3	111830819	111830921	reg1016662.p1	3.884	+	TSC_hg19_v1_chr3_+_111805267 AK303588 NM_001171747 NM_024616 AY830714 AK026839 BC017064 AK298076	-25642	+	AK131211 NM_001042575 BC117322	-72362	+	NM_001008273 BC004477 TSC_hg19_v1_chr3_+_111718179 AF112201 BT007408 CU677265	-112733	+	CU688884 BC030506 AY212246 AK313368 AK128276 AF521911 NM_001190259 NM_001190260 NM_152785	21189	-	BC044801 NM_183061 AK128084	182218	-	AK312563 NM_001004196 NM_005944 AK297194 BC022522 TSC_hg19_v1_chr3_+_112052002 AF063591	221088	+	AK303588|C3orf52|79669|chromosome 3 open reading frame 52##NM_001171747|C3orf52|79669|chromosome 3 open reading frame 52##NM_024616|C3orf52|79669|chromosome 3 open reading frame 52##AY830714|C3orf52|79669|chromosome 3 open reading frame 52##AK026839|C3orf52|79669|chromosome 3 open reading frame 52##BC017064|C3orf52|79669|chromosome 3 open reading frame 52##AK298076|C3orf52|79669|chromosome 3 open reading frame 52##AK131211|TMPRSS7|344805|transmembrane protease, serine 7##NM_001042575|TMPRSS7|344805|transmembrane protease, serine 7##BC117322|TMPRSS7|344805|transmembrane protease, serine 7##NM_001008273|TAGLN3|29114|transgelin 3##AF112201|TAGLN3|29114|transgelin 3##BT007408|TAGLN3|29114|transgelin 3##BC030506|GCET2|257144|germinal center expressed transcript 2##AY212246|GCET2|257144|germinal center expressed transcript 2##AK313368|GCET2|257144|germinal center expressed transcript 2##AF521911|GCET2|257144|germinal center expressed transcript 2##NM_001190259|GCET2|257144|germinal center expressed transcript 2##NM_001190260|GCET2|257144|germinal center expressed transcript 2##NM_152785|GCET2|257144|germinal center expressed transcript 2##BC044801|SLC9A10|285335|solute carrier family 9, member 10##NM_183061|SLC9A10|285335|solute carrier family 9, member 10##AK128084|SLC9A10|285335|solute carrier family 9, member 10##AK312563|CD200|4345|CD200 molecule##NM_001004196|CD200|4345|CD200 molecule##NM_005944|CD200|4345|CD200 molecule##AK297194|CD200|4345|CD200 molecule##BC022522|CD200|4345|CD200 molecule##AF063591|CD200|4345|CD200 molecule	0.0	0.878039	CTCF.p2:-31:0.878
chr3	15139976	15140098	reg1014040.p2	3.884	+	TSC_hg19_v1_chr3_-_15106823 NM_022497 AK298791	-33223	-	CU678518 AK024433 AK024702 AK294123 BC003590 TSC_hg19_v1_chr3_-_15106800	-33286	-	TSC_hg19_v1_chr3_-_14989860 AK096279 BC033386	-150144	-	AB209673 TSC_hg19_v1_chr3_-_15140645	597	-	TSC_hg19_v1_chr3_-_15140649 BC032628	612	-	TSC_hg19_v1_chr3_-_15140655 AK291288 AK301735 AL833545 NM_022340	616	-	NM_022497|MRPS25|64432|mitochondrial ribosomal protein S25##AK298791|MRPS25|64432|mitochondrial ribosomal protein S25##AK024433|MRPS25|64432|mitochondrial ribosomal protein S25##AK024702|MRPS25|64432|mitochondrial ribosomal protein S25##AK294123|MRPS25|64432|mitochondrial ribosomal protein S25##BC003590|MRPS25|64432|mitochondrial ribosomal protein S25##AK096279|LOC100505641|100505641|uncharacterized LOC100505641##BC033386|LOC100505641|100505641|uncharacterized LOC100505641##AB209673|ZFYVE20|64145|zinc finger, FYVE domain containing 20##BC032628|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AK291288|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AK301735|ZFYVE20|64145|zinc finger, FYVE domain containing 20##AL833545|ZFYVE20|64145|zinc finger, FYVE domain containing 20##NM_022340|ZFYVE20|64145|zinc finger, FYVE domain containing 20	1.102677	0.0	denovo_WM_7:-58:0.284	denovo_WM_7:-66:0.335	denovo_WM_7:-67:0.241
chr9	114720450	114720548	reg1016704.p1	3.884	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-61032	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-61385	+	AL833535 NM_173521	-174724	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	217021	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	374788	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	375350	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.0	0.0	
chr10	130687754	130687833	reg1014812.p2	3.883	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	-763265	-	BX648180 NM_130435 BC071573 TSC_hg19_v1_chr10_+_129845875 AK290414 AJ430580 AJ315969	-841939	+	TSC_hg19_v1_chr10_+_129705366 AF406557 BC050062 X54134	-982338	+	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	577678	+	TSC_hg19_v1_chr10_+_131265507 BC000824	577721	+	AL832828 AB527459 HQ258299 BC126130 BC130479 NM_001005463	1074260	-	NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##BX648180|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_130435|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC071573|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AK290414|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ430580|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ315969|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AF406557|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC050062|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##X54134|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AL832828|EBF3|253738|early B-cell factor 3##HQ258299|EBF3|253738|early B-cell factor 3##BC126130|EBF3|253738|early B-cell factor 3##BC130479|EBF3|253738|early B-cell factor 3##NM_001005463|EBF3|253738|early B-cell factor 3	0.0	0.0	
chr10	43931704	43931809	reg1017643.p1	3.883	+	TSC_hg19_v1_chr10_-_43904631 BC015580 BC004254 AK296696 NM_004966 NM_001098204	-27110	-	TSC_hg19_v1_chr10_-_43904306 AK001364 NM_001098205	-27438	-	TSC_hg19_v1_chr10_-_43903224 BC016736 NM_001098206	-28497	-	AK302442 TSC_hg19_v1_chr10_+_43932667	864	+	NM_005674 X82125	132150	-	BC026030 X82128 AK292013 NM_001099282 NM_001099283 NM_001099284	138280	-	BC015580|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC004254|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK296696|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_004966|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098204|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK001364|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098205|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC016736|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098206|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK302442|ZNF487P|642819|zinc finger protein 487, pseudogene##NM_005674|ZNF239|8187|zinc finger protein 239##X82125|ZNF239|8187|zinc finger protein 239##BC026030|ZNF239|8187|zinc finger protein 239##X82128|ZNF239|8187|zinc finger protein 239##AK292013|ZNF239|8187|zinc finger protein 239##NM_001099282|ZNF239|8187|zinc finger protein 239##NM_001099283|ZNF239|8187|zinc finger protein 239##NM_001099284|ZNF239|8187|zinc finger protein 239	0.998505	0.0	
chr14	21250588	21250752	reg1016317.p2	3.883	+	BC020848 NM_005615 AK313580	-1452	+	AY358865 NM_022360 BC128030	-14067	+	NM_006683 X76383 BC096698 BC096731 BC069407	-36558	+	AK098375 NM_198232	19877	-	TSC_hg19_v1_chr14_-_21271004 AK312100 BC022882 BC005324 NM_002933 NM_198234 NM_198235	20348	-	TSC_hg19_v1_chr14_+_21359543 NM_002935 X15161 M28128 BC096060 BC096061 BC096062	108889	+	BC020848|RNASE6|6039|ribonuclease, RNase A family, k6##NM_005615|RNASE6|6039|ribonuclease, RNase A family, k6##AK313580|RNASE6|6039|ribonuclease, RNase A family, k6##AY358865|EDDM3B|64184|epididymal protein 3B##NM_022360|EDDM3B|64184|epididymal protein 3B##BC128030|EDDM3B|64184|epididymal protein 3B##NM_006683|EDDM3A|10876|epididymal protein 3A##X76383|EDDM3A|10876|epididymal protein 3A##BC096698|EDDM3A|10876|epididymal protein 3A##BC096731|EDDM3A|10876|epididymal protein 3A##BC069407|EDDM3A|10876|epididymal protein 3A##AK098375|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198232|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##AK312100|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##BC022882|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##BC005324|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_002933|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198234|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_198235|RNASE1|6035|ribonuclease, RNase A family, 1 (pancreatic)##NM_002935|RNASE3|6037|ribonuclease, RNase A family, 3##X15161|RNASE3|6037|ribonuclease, RNase A family, 3##M28128|RNASE3|6037|ribonuclease, RNase A family, 3##BC096060|RNASE3|6037|ribonuclease, RNase A family, 3##BC096061|RNASE3|6037|ribonuclease, RNase A family, 3##BC096062|RNASE3|6037|ribonuclease, RNase A family, 3	0.0	0.0	
chr16	87899765	87899945	reg1002312.p1	3.883	+	TSC_hg19_v1_chr16_-_87799568 BC022969 AK023986 BC011680 NM_001184854 NM_001184856 NM_017566	-100285	-	AB529140 CU674522 CU680010 CU692766 BC001044 TSC_hg19_v1_chr16_-_87799535	-100340	-	TSC_hg19_v1_chr16_+_87636671 DQ893569 DQ894420	-263145	+	AB590343 DQ893338 DQ896766 TSC_hg19_v1_chr16_-_87903112 AB018542 AB017908 AF077866 AB018009 AF104032 BC042600 NM_003486	3220	-	BC137405 BC137411 L19297 NM_001739 TSC_hg19_v1_chr16_-_87970185	70292	-	TSC_hg19_v1_chr16_+_87985039 AK001039 NM_001173539 NM_001173540 NM_001173541 NM_017869 NM_079837 AK125232 AK315089 AK293472 AK297945 BC009424	85313	+	BC022969|KLHDC4|54758|kelch domain containing 4##AK023986|KLHDC4|54758|kelch domain containing 4##BC011680|KLHDC4|54758|kelch domain containing 4##NM_001184854|KLHDC4|54758|kelch domain containing 4##NM_001184856|KLHDC4|54758|kelch domain containing 4##NM_017566|KLHDC4|54758|kelch domain containing 4##BC001044|KLHDC4|54758|kelch domain containing 4##DQ893569|JPH3|57338|junctophilin 3##DQ894420|JPH3|57338|junctophilin 3##DQ893338|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##DQ896766|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018542|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB017908|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF077866|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AB018009|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##AF104032|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC042600|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##NM_003486|SLC7A5|8140|solute carrier family 7 (amino acid transporter light chain, L system), member 5##BC137405|CA5A|763|carbonic anhydrase VA, mitochondrial##BC137411|CA5A|763|carbonic anhydrase VA, mitochondrial##L19297|CA5A|763|carbonic anhydrase VA, mitochondrial##NM_001739|CA5A|763|carbonic anhydrase VA, mitochondrial##AK001039|BANP|54971|BTG3 associated nuclear protein##NM_001173539|BANP|54971|BTG3 associated nuclear protein##NM_001173540|BANP|54971|BTG3 associated nuclear protein##NM_001173541|BANP|54971|BTG3 associated nuclear protein##NM_017869|BANP|54971|BTG3 associated nuclear protein##NM_079837|BANP|54971|BTG3 associated nuclear protein##AK125232|BANP|54971|BTG3 associated nuclear protein##AK315089|BANP|54971|BTG3 associated nuclear protein##AK293472|BANP|54971|BTG3 associated nuclear protein##AK297945|BANP|54971|BTG3 associated nuclear protein##BC009424|BANP|54971|BTG3 associated nuclear protein	0.0	0.0	
chr18	7056049	7056142	reg1014902.p1	3.883	+	NM_001010000 BX648684 AK308259 AK302026	-221630	+	NM_001243517	-544681	+	BC039316 NM_173464 TSC_hg19_v1_chr18_-_6414931	-641180	-	BC144590 NM_005559 X58531	61689	-	NM_001105581	175041	+	NM_001105244 NM_002845 TSC_hg19_v1_chr18_+_7567321	511222	+	NM_001010000|ARHGAP28|79822|Rho GTPase activating protein 28##BX648684|ARHGAP28|79822|Rho GTPase activating protein 28##AK308259|ARHGAP28|79822|Rho GTPase activating protein 28##AK302026|ARHGAP28|79822|Rho GTPase activating protein 28##NM_001243517|LOC100130480|100130480|uncharacterized LOC100130480##BC039316|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##NM_173464|L3MBTL4|91133|l(3)mbt-like 4 (Drosophila)##BC144590|LAMA1|284217|laminin, alpha 1##NM_005559|LAMA1|284217|laminin, alpha 1##X58531|LAMA1|284217|laminin, alpha 1##NM_001105581|LRRC30|339291|leucine rich repeat containing 30##NM_001105244|PTPRM|5797|protein tyrosine phosphatase, receptor type, M##NM_002845|PTPRM|5797|protein tyrosine phosphatase, receptor type, M	0.992928	0.0	denovo_WM_7:-8:0.222	denovo_WM_7:-9:0.771
chr6	138228583	138228708	reg1015209.p2	3.883	+	TSC_hg19_v1_chr6_-_138189314 AK124173	-39295	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	-40108	+	BC051352 AK096362 NM_175747	-413120	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	199923	-	TSC_hg19_v1_chr6_+_138483075 AB252196 NM_020340	254491	+	BC069109 NM_021635 AF189269 AF189270	310981	-	AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector##AB252196|KIAA1244|57221|KIAA1244##NM_020340|KIAA1244|57221|KIAA1244##BC069109|PBOV1|59351|prostate and breast cancer overexpressed 1##NM_021635|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189269|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189270|PBOV1|59351|prostate and breast cancer overexpressed 1	1.930966	0.0	denovo_WM_7:-11:0.664	denovo_WM_7:-103:0.985
chr6	62626699	62626789	reg1011872.p1	3.883	+	BC017330 BC030061 TSC_hg19_v1_chr6_-_58287674 BC011838 BC144584 BC144585 BC065547	-4339065	-	TSC_hg19_v1_chr6_+_57182427 BC017833 NM_000947 X74331 AK223287 AK291915 BC064931	-5444329	+	TSC_hg19_v1_chr6_-_57087081 AF161486 BC015021 NM_016277 CR749371 AK311123	-5539673	-	CU689822 TSC_hg19_v1_chr6_-_62996128 AY077838 AK292043 AK095983 NM_152688 BC034043	369257	-	DQ682605 DQ682606 BC130366 BC130368 AF242388 NM_001143940 NM_016571	1403120	-	TSC_hg19_v1_chr6_+_64231650 CR749458	1604911	+	BC017330|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC030061|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC011838|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144584|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC144585|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC065547|GUSBP4|375513|glucuronidase, beta pseudogene 4##BC017833|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##NM_000947|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##X74331|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK223287|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AK291915|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##BC064931|PRIM2|5558|primase, DNA, polypeptide 2 (58kDa)##AF161486|RAB23|51715|RAB23, member RAS oncogene family##BC015021|RAB23|51715|RAB23, member RAS oncogene family##NM_016277|RAB23|51715|RAB23, member RAS oncogene family##CR749371|RAB23|51715|RAB23, member RAS oncogene family##AK311123|RAB23|51715|RAB23, member RAS oncogene family##AY077838|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK292043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##AK095983|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##NM_152688|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##BC034043|KHDRBS2|202559|KH domain containing, RNA binding, signal transduction associated 2##DQ682605|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##DQ682606|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130366|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##BC130368|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##AF242388|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_001143940|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##NM_016571|LGSN|51557|lengsin, lens protein with glutamine synthetase domain##CR749458|PTP4A1|7803|protein tyrosine phosphatase type IVA, member 1	0.0	0.0	
chr9	94477483	94477600	reg1005484.p4	3.883	+	TSC_hg19_v1_chr9_-_94186159 NM_005384	-291359	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	-291497	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-353342	-	TSC_hg19_v1_chr9_-_94711095 BC033697	233587	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	234848	-	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	400123	-	NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1	0.013868	0.0	
chrX	19881300	19881414	reg1014192.p1	3.883	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-63445	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-63482	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-192301	-	TSC_hg19_v1_chrX_-_19905450 AY542305	24106	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	24275	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	24347	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.689356	0.0	denovo_WM_7:-32:0.256	denovo_WM_7:-33:0.433
chr1	154413039	154413177	reg1013843.p1	3.882	+	TSC_hg19_v1_chr1_+_154378074 AK293013 X58298 AK312730 BC035327 AB527867 HQ258435 HQ258616	-35034	+	AK223582 BC132684 BC132686 TSC_hg19_v1_chr1_+_154377856	-35256	+	NM_000565 NM_001206866 NM_181359 X12830 BC089410 TSC_hg19_v1_chr1_+_154377822	-35358	+	BC143765 BC117210 NM_001010846	61416	-	BC044864 NM_001098475 NM_182499	61586	+	BC107057 AY112698 TSC_hg19_v1_chr1_-_154531132 AY948200 NM_017582	118001	-	AK293013|IL6R|3570|interleukin 6 receptor##X58298|IL6R|3570|interleukin 6 receptor##AK312730|IL6R|3570|interleukin 6 receptor##BC035327|IL6R|3570|interleukin 6 receptor##HQ258435|IL6R|3570|interleukin 6 receptor##HQ258616|IL6R|3570|interleukin 6 receptor##AK223582|IL6R|3570|interleukin 6 receptor##BC132684|IL6R|3570|interleukin 6 receptor##BC132686|IL6R|3570|interleukin 6 receptor##NM_000565|IL6R|3570|interleukin 6 receptor##NM_001206866|IL6R|3570|interleukin 6 receptor##NM_181359|IL6R|3570|interleukin 6 receptor##X12830|IL6R|3570|interleukin 6 receptor##BC089410|IL6R|3570|interleukin 6 receptor##BC143765|SHE|126669|Src homology 2 domain containing E##BC117210|SHE|126669|Src homology 2 domain containing E##NM_001010846|SHE|126669|Src homology 2 domain containing E##BC044864|TDRD10|126668|tudor domain containing 10##NM_001098475|TDRD10|126668|tudor domain containing 10##NM_182499|TDRD10|126668|tudor domain containing 10##BC107057|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY112698|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY948200|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##NM_017582|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1	0.999094	0.0	denovo_WM_7:31:0.310	denovo_WM_7:32:0.310	denovo_WM_7:33:0.310
chr12	107216021	107216126	reg1011254.p2	3.882	+	TSC_hg19_v1_chr12_+_107168357 NM_018157 BC132689 BC144056 BC034220 AK001482 AY221116	-47611	+	BC028582 NM_032491 AF332192 AK315698 BC030644 CU688514 CU688962 DQ890831 DQ893986	-137540	+	NM_001206691 AB095365 AK302837 AB044245	-221142	+	TSC_hg19_v1_chr12_+_107349591 NM_152261	133524	+	AK024021 TSC_hg19_v1_chr12_+_107349684 AK001731 BC020522 AK022770	133635	+	TSC_hg19_v1_chr12_-_107380925 BC036066 BC068468 AK222558 AY008301 BC050361 BC025984 AK024124 NM_001033050 NM_025198	164825	-	NM_018157|RIC8B|55188|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)##BC132689|RIC8B|55188|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)##BC144056|RIC8B|55188|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)##BC034220|RIC8B|55188|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)##AK001482|RIC8B|55188|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)##AY221116|RIC8B|55188|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)##BC028582|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##NM_032491|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AF332192|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AK315698|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##BC030644|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##DQ890831|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##DQ893986|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##NM_001206691|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AB095365|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AK302837|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##AB044245|RFX4|5992|regulatory factor X, 4 (influences HLA class II expression)##NM_152261|C12orf23|90488|chromosome 12 open reading frame 23##AK024021|C12orf23|90488|chromosome 12 open reading frame 23##AK001731|C12orf23|90488|chromosome 12 open reading frame 23##BC020522|C12orf23|90488|chromosome 12 open reading frame 23##AK022770|C12orf23|90488|chromosome 12 open reading frame 23##BC036066|MTERFD3|80298|MTERF domain containing 3##BC068468|MTERFD3|80298|MTERF domain containing 3##AK222558|MTERFD3|80298|MTERF domain containing 3##AY008301|MTERFD3|80298|MTERF domain containing 3##BC050361|MTERFD3|80298|MTERF domain containing 3##BC025984|MTERFD3|80298|MTERF domain containing 3##AK024124|MTERFD3|80298|MTERF domain containing 3##NM_001033050|MTERFD3|80298|MTERF domain containing 3##NM_025198|MTERFD3|80298|MTERF domain containing 3	0.0	0.0	
chr13	98112658	98112827	reg1012421.p2	3.882	+	TSC_hg19_v1_chr13_+_98086683 AF205602 BC070031 EU832309 EU832393 X12534 AB464128 AF493914	-26040	+	TSC_hg19_v1_chr13_+_98086350 AK315139 NM_021033 BC041333	-26305	+	TSC_hg19_v1_chr13_+_97999294 AF339832	-113448	+	NM_002271 BC045640	493195	+	TSC_hg19_v1_chr13_+_98628928 BX648222 AK303494 AK225286 BC001497 BC019309 DQ893033 EU176755 U72761	516090	+	TSC_hg19_v1_chr13_+_98795412 NM_001001715 NM_005766	682679	+	AF205602|RAP2A|5911|RAP2A, member of RAS oncogene family##BC070031|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832309|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832393|RAP2A|5911|RAP2A, member of RAS oncogene family##X12534|RAP2A|5911|RAP2A, member of RAS oncogene family##AF493914|RAP2A|5911|RAP2A, member of RAS oncogene family##AK315139|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_021033|RAP2A|5911|RAP2A, member of RAS oncogene family##BC041333|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_002271|IPO5|3843|importin 5##BC045640|IPO5|3843|importin 5##BX648222|IPO5|3843|importin 5##AK303494|IPO5|3843|importin 5##AK225286|IPO5|3843|importin 5##BC001497|IPO5|3843|importin 5##BC019309|IPO5|3843|importin 5##DQ893033|IPO5|3843|importin 5##EU176755|IPO5|3843|importin 5##U72761|IPO5|3843|importin 5##NM_001001715|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##NM_005766|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	0.983372	0.0	denovo_WM_7:32:0.646	denovo_WM_7:33:0.337
chr19	6361388	6361541	reg1010252.p2	3.882	+	AF347024 BC112122 BC112124 NM_133492	-27864	-	TSC_hg19_v1_chr19_-_6279967 D14539 NM_005934	-81499	-	AB463904 TSC_hg19_v1_chr19_-_6279803	-81661	-	BC002956 NM_006012 TSC_hg19_v1_chr19_+_6361541	37	+	TSC_hg19_v1_chr19_+_6361559 AK311973 Z50853 EF036491 DQ895823 EU176368	149	+	AY358858 AY427650 NM_032306	10979	+	AF347024|ACER1|125981|alkaline ceramidase 1##BC112122|ACER1|125981|alkaline ceramidase 1##BC112124|ACER1|125981|alkaline ceramidase 1##NM_133492|ACER1|125981|alkaline ceramidase 1##D14539|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##NM_005934|MLLT1|4298|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1##BC002956|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##NM_006012|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##AK311973|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##Z50853|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EF036491|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##DQ895823|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##EU176368|CLPP|8192|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)##AY358858|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##AY427650|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)##NM_032306|ALKBH7|84266|alkB, alkylation repair homolog 7 (E. coli)	0.0	0.0	
chr5	18394445	18394562	reg1013205.p1	3.882	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-1176663	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-1176891	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-1458118	-	AK295087 BC031051 NM_001167667 NM_004934	1593819	-	TSC_hg19_v1_chr5_+_21459621 AK290693	3065106	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	3065145	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.0	0.921196	CTCF.p2:-6:0.921
chr6	35551761	35551892	reg1011874.p2	3.882	+	CU689498 EU446712 BC065261 NM_003322 BC032714 BC001761 BC021268 AB593124 AB593123 DQ426893	-71152	-	BC010053 BC027877 BC091488 AF142482 TSC_hg19_v1_chr6_-_35464854 NM_003214	-87014	-	AB082926 BC006791 U12404 TSC_hg19_v1_chr6_+_35436204 BC011366	-115623	+	TSC_hg19_v1_chr6_-_35656616 HM245391 AB209893	104794	-	TSC_hg19_v1_chr6_-_35656693 BC111050 AK222807 AK302704 AK303356 AK312422 BX647390 NM_001145776 AF194172 U71321 NM_001145777 NM_004117	104880	-	BC042605 NM_001145775	144533	-	EU446712|TULP1|7287|tubby like protein 1##BC065261|TULP1|7287|tubby like protein 1##NM_003322|TULP1|7287|tubby like protein 1##BC032714|TULP1|7287|tubby like protein 1##AB593124|TULP1|7287|tubby like protein 1##AB593123|TULP1|7287|tubby like protein 1##DQ426893|TULP1|7287|tubby like protein 1##BC010053|TEAD3|7005|TEA domain family member 3##BC027877|TEAD3|7005|TEA domain family member 3##BC091488|TEAD3|7005|TEA domain family member 3##AF142482|TEAD3|7005|TEA domain family member 3##NM_003214|TEAD3|7005|TEA domain family member 3##AB082926|RPL10A|4736|ribosomal protein L10a##BC006791|RPL10A|4736|ribosomal protein L10a##U12404|RPL10A|4736|ribosomal protein L10a##BC011366|RPL10A|4736|ribosomal protein L10a##HM245391|FKBP5|2289|FK506 binding protein 5##AB209893|FKBP5|2289|FK506 binding protein 5##BC111050|FKBP5|2289|FK506 binding protein 5##AK222807|FKBP5|2289|FK506 binding protein 5##AK302704|FKBP5|2289|FK506 binding protein 5##AK303356|FKBP5|2289|FK506 binding protein 5##AK312422|FKBP5|2289|FK506 binding protein 5##BX647390|FKBP5|2289|FK506 binding protein 5##NM_001145776|FKBP5|2289|FK506 binding protein 5##AF194172|FKBP5|2289|FK506 binding protein 5##U71321|FKBP5|2289|FK506 binding protein 5##NM_001145777|FKBP5|2289|FK506 binding protein 5##NM_004117|FKBP5|2289|FK506 binding protein 5##BC042605|FKBP5|2289|FK506 binding protein 5##NM_001145775|FKBP5|2289|FK506 binding protein 5	0.347595	0.047846	denovo_WM_7:20:0.285
chr9	6667819	6667986	reg1018505.p2	3.882	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	-22275	-	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-254497	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-254705	+	AK310439 NM_001146696	52960	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	89765	+	TSC_hg19_v1_chr9_+_6757984 AB018323 AK304095 AK314355 AB037901 BC008296 AK303651 AK304032 BC104859 BC104861 BC143571	90137	+	BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C##AB018323|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304095|KDM4C|23081|lysine (K)-specific demethylase 4C##AK314355|KDM4C|23081|lysine (K)-specific demethylase 4C##AB037901|KDM4C|23081|lysine (K)-specific demethylase 4C##BC008296|KDM4C|23081|lysine (K)-specific demethylase 4C##AK303651|KDM4C|23081|lysine (K)-specific demethylase 4C##AK304032|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104859|KDM4C|23081|lysine (K)-specific demethylase 4C##BC104861|KDM4C|23081|lysine (K)-specific demethylase 4C##BC143571|KDM4C|23081|lysine (K)-specific demethylase 4C	0.0	0.850921	CTCF.p2:-41:0.851
chrX	19574330	19574431	reg1011605.p1	3.882	+	NM_001001671	-41002	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-212298	+	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	-433713	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	114676	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	243495	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	243532	-	NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.999234	0.0	denovo_WM_7:33:0.308	denovo_WM_7:34:0.618
chr10	18707593	18707695	reg1015327.p1	3.881	+	NM_201570 AK299873 AK295113	-18081	+	AK310943 NM_201590	-78031	+	NM_000724 AB208917 U95019	-158004	+	AK074323 BC035778 NM_182543	232888	-	BC033534 TSC_hg19_v1_chr10_-_18948215	240553	-	TSC_hg19_v1_chr10_+_18948359 NM_178815 BC024163 AK027275 AF494061 DQ893166 DQ896464	240777	+	NM_201570|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK299873|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK295113|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK310943|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_201590|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##NM_000724|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AB208917|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##U95019|CACNB2|783|calcium channel, voltage-dependent, beta 2 subunit##AK074323|NSUN6|221078|NOP2/Sun domain family, member 6##BC035778|NSUN6|221078|NOP2/Sun domain family, member 6##NM_182543|NSUN6|221078|NOP2/Sun domain family, member 6##NM_178815|ARL5B|221079|ADP-ribosylation factor-like 5B##BC024163|ARL5B|221079|ADP-ribosylation factor-like 5B##AK027275|ARL5B|221079|ADP-ribosylation factor-like 5B##AF494061|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ893166|ARL5B|221079|ADP-ribosylation factor-like 5B##DQ896464|ARL5B|221079|ADP-ribosylation factor-like 5B	0.0	0.0	
chr11	45361412	45361545	reg1012482.p1	3.881	+	AK308841 AB384203 AM393283 BC093830 AK291009 BC093832 AL512743 AB037848 NM_001247987 NM_020826	-53728	-	AF275818 NM_020229	-245915	+	TSC_hg19_v1_chr11_-_44972435 AK292837 AK096176 AK056379 AK026607 AK054815 NM_001076787 NM_006034	-389061	-	TSC_hg19_v1_chr11_-_45687157 AK311168 BC022567 NM_003654	325706	-	NM_001145265 NM_001145266	464144	+	TSC_hg19_v1_chr11_+_45825944 AK225428 AK002182 AK091245	464436	+	AK308841|SYT13|57586|synaptotagmin XIII##AM393283|SYT13|57586|synaptotagmin XIII##BC093830|SYT13|57586|synaptotagmin XIII##AK291009|SYT13|57586|synaptotagmin XIII##BC093832|SYT13|57586|synaptotagmin XIII##AL512743|SYT13|57586|synaptotagmin XIII##AB037848|SYT13|57586|synaptotagmin XIII##NM_001247987|SYT13|57586|synaptotagmin XIII##NM_020826|SYT13|57586|synaptotagmin XIII##AF275818|PRDM11|56981|PR domain containing 11##NM_020229|PRDM11|56981|PR domain containing 11##AK292837|TP53I11|9537|tumor protein p53 inducible protein 11##AK096176|TP53I11|9537|tumor protein p53 inducible protein 11##AK056379|TP53I11|9537|tumor protein p53 inducible protein 11##AK026607|TP53I11|9537|tumor protein p53 inducible protein 11##AK054815|TP53I11|9537|tumor protein p53 inducible protein 11##NM_001076787|TP53I11|9537|tumor protein p53 inducible protein 11##NM_006034|TP53I11|9537|tumor protein p53 inducible protein 11##AK311168|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##BC022567|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_003654|CHST1|8534|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1##NM_001145265|SLC35C1|55343|solute carrier family 35, member C1##NM_001145266|SLC35C1|55343|solute carrier family 35, member C1##AK225428|SLC35C1|55343|solute carrier family 35, member C1##AK002182|SLC35C1|55343|solute carrier family 35, member C1##AK091245|SLC35C1|55343|solute carrier family 35, member C1	1.111401	0.0	denovo_WM_7:-23:0.663
chr12	129340239	129340346	reg1012449.p1	3.881	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	-2205	+	BC043528 TSC_hg19_v1_chr12_+_129337985	-2308	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	-31849	-	BC114626 BC114936 NM_133448 AB061814	1047919	-	AK056047 TSC_hg19_v1_chr12_-_130646911	1306564	-	TSC_hg19_v1_chr12_+_130647008 BC070037 NM_007197	1306718	+	AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D##AK056047|FLJ31485|440119|uncharacterized LOC440119##BC070037|FZD10|11211|frizzled family receptor 10##NM_007197|FZD10|11211|frizzled family receptor 10	1.897518	0.0	denovo_WM_7:-53:0.888
chr2	62357267	62357401	reg1017102.p1	3.881	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-224505	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-241548	-	TSC_hg19_v1_chr2_-_62115733 BC106933 BC106934 AF026291	-241600	-	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	65932	+	BC047439 AK091902 AX747245 NM_198276	376205	-	AK292545 NM_001142615	543651	+	AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106933|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC106934|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AF026291|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1	2.453808	0.0	denovo_WM_7:-20:0.428	denovo_WM_7:-36:0.964	denovo_WM_7:79:0.726
chr2	62533208	62533366	reg1014747.p2	3.881	+	TSC_hg19_v1_chr2_+_62423260 AB049584 BC047933 NM_006577 AF092051 AF288208	-110021	+	TSC_hg19_v1_chr2_+_62132808 AK223607 AB178811 NM_152516 AK294203 BC022046 CU692476 AB590636 BC009266 D85433	-400458	+	TSC_hg19_v1_chr2_-_62115750 AK312586 AK315975 AK307856 AK290538 BC093446 AK308942 AK303082 NM_006430	-417501	-	BC047439 AK091902 AX747245 NM_198276	200252	-	AK292545 NM_001142615	367698	+	TSC_hg19_v1_chr2_+_62932868 AK310828 AK000828 NM_001142616 NM_015252 AL833968 BC067215	399679	+	AB049584|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##BC047933|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##NM_006577|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF092051|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AF288208|B3GNT2|10678|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2##AK223607|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AB178811|COMMD1|150684|copper metabolism (Murr1) domain containing 1##NM_152516|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK294203|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC022046|COMMD1|150684|copper metabolism (Murr1) domain containing 1##BC009266|COMMD1|150684|copper metabolism (Murr1) domain containing 1##D85433|COMMD1|150684|copper metabolism (Murr1) domain containing 1##AK312586|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK315975|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK307856|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK290538|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK308942|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##AK303082|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##NM_006430|CCT4|10575|chaperonin containing TCP1, subunit 4 (delta)##BC047439|TMEM17|200728|transmembrane protein 17##AK091902|TMEM17|200728|transmembrane protein 17##NM_198276|TMEM17|200728|transmembrane protein 17##AK292545|EHBP1|23301|EH domain binding protein 1##NM_001142615|EHBP1|23301|EH domain binding protein 1##AK310828|EHBP1|23301|EH domain binding protein 1##AK000828|EHBP1|23301|EH domain binding protein 1##NM_001142616|EHBP1|23301|EH domain binding protein 1##NM_015252|EHBP1|23301|EH domain binding protein 1##AL833968|EHBP1|23301|EH domain binding protein 1##BC067215|EHBP1|23301|EH domain binding protein 1	0.0	0.0	
chr7	104992765	104992886	reg1017046.p1	3.881	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-83342	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-240447	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-311411	+	TSC_hg19_v1_chr7_-_105029265 AB489157	36440	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	36517	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	169836	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.0	0.0	
chr1	66808568	66808690	reg1010827.p2	3.880	+	TSC_hg19_v1_chr1_+_66798096 AK294441	-10534	+	L12685 NM_001037339 M97515 L12686 TSC_hg19_v1_chr1_+_66797927	-10776	+	AB209081 NM_001037340 AK290006	-350226	+	AK299941 AK298970 NM_032291 TSC_hg19_v1_chr1_+_66999843 AB210039 AL136561	191255	+	TSC_hg19_v1_chr1_+_67218141 NM_152665 AK098192	409495	+	TSC_hg19_v1_chr1_+_67218151 BC106885 AK307100 AK307878	409536	+	AK294441|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037339|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##M97515|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##L12686|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AB209081|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##NM_001037340|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK290006|PDE4B|5142|phosphodiesterase 4B, cAMP-specific##AK299941|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AK298970|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##NM_032291|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AB210039|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##AL136561|SGIP1|84251|SH3-domain GRB2-like (endophilin) interacting protein 1##NM_152665|TCTEX1D1|200132|Tctex1 domain containing 1##AK098192|TCTEX1D1|200132|Tctex1 domain containing 1##BC106885|TCTEX1D1|200132|Tctex1 domain containing 1##AK307100|TCTEX1D1|200132|Tctex1 domain containing 1##AK307878|TCTEX1D1|200132|Tctex1 domain containing 1	0.045776	0.0	
chr16	78739771	78739923	reg1011150.p1	3.880	+	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-606392	+	NM_001244755	-676862	+	AK310847 AK313316 NM_005752 BC104414 BC104415 AY358376	-683397	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	894768	-	AF125108 NM_130897 BC054892 BC035232	1835041	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	2098200	-	NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##NM_001244755|CLEC3A|10143|C-type lectin domain family 3, member A##AK313316|CLEC3A|10143|C-type lectin domain family 3, member A##NM_005752|CLEC3A|10143|C-type lectin domain family 3, member A##BC104414|CLEC3A|10143|C-type lectin domain family 3, member A##BC104415|CLEC3A|10143|C-type lectin domain family 3, member A##AY358376|CLEC3A|10143|C-type lectin domain family 3, member A##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2	0.0	0.978078	CTCF.p2:-87:0.978
chr19	50050108	50050288	reg1008795.p1	3.880	+	TSC_hg19_v1_chr19_+_50031259 AY358423 BC013436	-18937	+	AY195859 NM_020650	-19324	+	TSC_hg19_v1_chr19_+_50016643 AK075510 BC020421 AK299124 AB463631 DQ893544 DQ893808 BT006828	-33566	+	BC047314 TSC_hg19_v1_chr19_-_50083811 BC009299 BC010077 NM_015953 AK092444 AX747549 AK291535 AK300720	33603	-	AF132959 TSC_hg19_v1_chr19_-_50083814	33616	-	NM_000951 BC026032	34409	+	AY358423|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##BC013436|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##AY195859|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##NM_020650|RCN3|57333|reticulocalbin 3, EF-hand calcium binding domain##AK075510|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC020421|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##AK299124|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##DQ893544|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##DQ893808|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BT006828|FCGRT|2217|Fc fragment of IgG, receptor, transporter, alpha##BC047314|NOSIP|51070|nitric oxide synthase interacting protein##BC009299|NOSIP|51070|nitric oxide synthase interacting protein##BC010077|NOSIP|51070|nitric oxide synthase interacting protein##NM_015953|NOSIP|51070|nitric oxide synthase interacting protein##AK092444|NOSIP|51070|nitric oxide synthase interacting protein##AK291535|NOSIP|51070|nitric oxide synthase interacting protein##AK300720|NOSIP|51070|nitric oxide synthase interacting protein##AF132959|NOSIP|51070|nitric oxide synthase interacting protein##NM_000951|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2##BC026032|PRRG2|5639|proline rich Gla (G-carboxyglutamic acid) 2	0.0	0.05211	
chr21	38951517	38951631	reg1016816.p1	3.880	+	NM_130438 NM_001396 U52373 D85759 U58496	-158954	+	D86550 NM_130436	-160368	+	AF108830 NM_101395 AB015283 AB015284	-211704	+	D87327 NM_002240 TSC_hg19_v1_chr21_-_39288761	337137	-	HQ257978 DQ179113 BC069729 BC096162 BC096163 BC096164 AB000099 NM_005867	541827	-	BC013327 NM_002243	677089	+	NM_130438|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_001396|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U52373|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D85759|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##U58496|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D86550|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_130436|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AF108830|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##NM_101395|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015283|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##AB015284|DYRK1A|1859|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A##D87327|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##NM_002240|KCNJ6|3763|potassium inwardly-rectifying channel, subfamily J, member 6##HQ257978|DSCR4|10281|Down syndrome critical region gene 4##DQ179113|DSCR4|10281|Down syndrome critical region gene 4##BC069729|DSCR4|10281|Down syndrome critical region gene 4##BC096162|DSCR4|10281|Down syndrome critical region gene 4##BC096163|DSCR4|10281|Down syndrome critical region gene 4##BC096164|DSCR4|10281|Down syndrome critical region gene 4##AB000099|DSCR4|10281|Down syndrome critical region gene 4##NM_005867|DSCR4|10281|Down syndrome critical region gene 4##BC013327|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15##NM_002243|KCNJ15|3772|potassium inwardly-rectifying channel, subfamily J, member 15	0.0	0.0	
chr5	133375333	133375431	reg1013838.p1	3.880	+	AK095989 NM_003374	-34559	-	TSC_hg19_v1_chr5_-_133340431 L06132	-34952	-	TSC_hg19_v1_chr5_-_133340397 BC071168 AK293639	-34981	-	TSC_hg19_v1_chr5_+_133450435 BC048769 NM_003202 BC072023 EU446661 AL832816	75137	+	NM_001134851 NM_201632 NM_201634 NM_213648 X59869 X59870 X59871 AK057580 AK093530	75979	+	BC009839 U33760 BC025673 TSC_hg19_v1_chr5_-_133512639 BC065730	137241	-	AK095989|VDAC1|7416|voltage-dependent anion channel 1##NM_003374|VDAC1|7416|voltage-dependent anion channel 1##L06132|VDAC1|7416|voltage-dependent anion channel 1##BC071168|VDAC1|7416|voltage-dependent anion channel 1##AK293639|VDAC1|7416|voltage-dependent anion channel 1##BC048769|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_003202|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC072023|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##EU446661|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AL832816|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_001134851|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201632|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201634|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_213648|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59869|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59870|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59871|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK057580|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK093530|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC009839|SKP1|6500|S-phase kinase-associated protein 1##U33760|SKP1|6500|S-phase kinase-associated protein 1##BC025673|SKP1|6500|S-phase kinase-associated protein 1##BC065730|SKP1|6500|S-phase kinase-associated protein 1	0.0	1.409691	CTCF.p2:30:0.986	CTCF.p2:-36:0.387
chr1	236031395	236031523	reg1013502.p1	3.879	+	NM_000081 U67615 TSC_hg19_v1_chr1_-_236030233	-1215	-	TSC_hg19_v1_chr1_-_236030193 BC020793	-1276	-	BC022485 NM_001098721 NM_004485	-217406	-	TSC_hg19_v1_chr1_-_236228375 AB209448 CU692272	196918	-	TSC_hg19_v1_chr1_-_236228393 BC045606 M30269	196966	-	TSC_hg19_v1_chr1_-_236228477 NM_002508	197019	-	NM_000081|LYST|1130|lysosomal trafficking regulator##U67615|LYST|1130|lysosomal trafficking regulator##BC022485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_001098721|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##NM_004485|GNG4|2786|guanine nucleotide binding protein (G protein), gamma 4##AB209448|NID1|4811|nidogen 1##BC045606|NID1|4811|nidogen 1##M30269|NID1|4811|nidogen 1##NM_002508|NID1|4811|nidogen 1	1.207271	0.0	denovo_WM_7:22:0.461
chr14	73872030	73872193	reg1012159.p1	3.879	+	NM_173462 TSC_hg19_v1_chr14_+_73704238 BC042057 BC136623 BC144315	-167860	+	AJ008005 TSC_hg19_v1_chr14_+_73603214	-268899	+	TSC_hg19_v1_chr14_+_73603184 L42110	-268931	+	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	53121	-	TSC_hg19_v1_chr14_-_73925274 BX248781	53156	-	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	53180	-	NM_173462|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC042057|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC136623|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##BC144315|PAPLN|89932|papilin, proteoglycan-like sulfated glycoprotein##AJ008005|PSEN1|5663|presenilin 1##L42110|PSEN1|5663|presenilin 1##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)	1.213694	0.0	
chr16	24201722	24201810	reg1017764.p1	3.879	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-354260	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-354371	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-354434	+	BC037899 NM_006539 AK095553	65108	+	AK055453 TSC_hg19_v1_chr16_+_24267474	65708	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	65932	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	2.63323	0.0	denovo_WM_7:37:0.504	denovo_WM_7:52:0.208	denovo_WM_7:53:0.786	denovo_WM_7:84:0.837
chr16	57607310	57607458	reg1017849.p2	3.879	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	-30796	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	-30830	+	BC008285 BC009941 NM_033212	-36919	-	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	46271	+	NM_001145770 NM_005682 AK075270 AY358400	46564	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	55070	+	BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56##NM_001145770|GPR56|9289|G protein-coupled receptor 56##NM_005682|GPR56|9289|G protein-coupled receptor 56##AK075270|GPR56|9289|G protein-coupled receptor 56##AY358400|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56	0.99813	0.0	
chr17_ctg5_hap1	7086	7234	reg1001631.p1	3.879	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999008	0.0	denovo_WM_7:-29:0.555	denovo_WM_7:-30:0.358
chr1	8328223	8328320	reg1013646.p2	3.879	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-241873	-	AK315718 BC025337 TSC_hg19_v1_chr1_-_8086370 AK096149	-241910	-	AB528431 AJ276373 DQ892137 DQ895331 BC012839 TSC_hg19_v1_chr1_-_8075752	-252556	-	NM_001080397	56118	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	155746	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	549321	-	NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK315718|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC025337|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AK096149|ERRFI1|54206|ERBB receptor feedback inhibitor 1##AJ276373|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ892137|ERRFI1|54206|ERBB receptor feedback inhibitor 1##DQ895331|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC012839|ERRFI1|54206|ERBB receptor feedback inhibitor 1##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats	0.998839	0.0	
chr2	191793380	191793531	reg1012299.p1	3.879	+	AF097492 TSC_hg19_v1_chr2_+_191745984	-47503	+	AF223943 TSC_hg19_v1_chr2_+_191745810 AB463054	-47655	+	TSC_hg19_v1_chr2_+_191745568 AF097495 Y08264 AF327434	-47871	+	TSC_hg19_v1_chr2_-_191872323 BC141921	78897	-	CR749636 TSC_hg19_v1_chr2_-_191878882	85427	-	TSC_hg19_v1_chr2_-_191878883 AK315002 BC002704	85439	-	AF097492|GLS|2744|glutaminase##AF223943|GLS|2744|glutaminase##AF097495|GLS|2744|glutaminase##Y08264|GLS|2744|glutaminase##AF327434|GLS|2744|glutaminase##BC141921|STAT1|6772|signal transducer and activator of transcription 1, 91kDa##CR749636|STAT1|6772|signal transducer and activator of transcription 1, 91kDa##AK315002|STAT1|6772|signal transducer and activator of transcription 1, 91kDa##BC002704|STAT1|6772|signal transducer and activator of transcription 1, 91kDa	1.118441	0.0	denovo_WM_7:-13:0.736
chr3	159817796	159817898	reg1017131.p1	3.879	+	NM_000882 BC035571 BC104982 BC104984 M65291 M65271 AF180562 AB528728 AF101062	-111115	+	TSC_hg19_v1_chr3_+_159557745 BC005947 CU675205	-259988	+	NM_001197109 AK091871 TSC_hg19_v1_chr3_+_159557738	-260154	+	TSC_hg19_v1_chr3_+_159943306 NM_001168214	125490	+	BC031660 TSC_hg19_v1_chr3_+_159943777	125856	+	AB037795 NM_001190242	283651	-	NM_000882|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC035571|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC104982|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC104984|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##M65291|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##M65271|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##AF180562|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##AF101062|IL12A|3592|interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35)##BC005947|SCHIP1|29970|schwannomin interacting protein 1##NM_001197109|SCHIP1|29970|schwannomin interacting protein 1##AK091871|SCHIP1|29970|schwannomin interacting protein 1##NM_001168214|C3orf80|401097|chromosome 3 open reading frame 80##BC031660|C3orf80|401097|chromosome 3 open reading frame 80##AB037795|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)##NM_001190242|IFT80|57560|intraflagellar transport 80 homolog (Chlamydomonas)	0.020573	0.0	
chr5	139027887	139027956	reg1007006.p2	3.879	+	TSC_hg19_v1_chr5_+_139027874 AK024338	-47	+	TSC_hg19_v1_chr5_+_138941350 U39317 AB590980	-86573	+	TSC_hg19_v1_chr5_+_138940966 AK001428 BC019052 AK001311 AY651263	-86996	+	TSC_hg19_v1_chr5_+_139027942 BC006428	9	+	BC024040 BC041013 TSC_hg19_v1_chr5_+_139027968 BC050046 BC017439	63	+	TSC_hg19_v1_chr5_+_139028290 AB097005 AB097032 NM_016463	246	+	AK024338|CXXC5|51523|CXXC finger protein 5##U39317|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001428|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC019052|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AK001311|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##AY651263|UBE2D2|7322|ubiquitin-conjugating enzyme E2D 2##BC006428|CXXC5|51523|CXXC finger protein 5##BC024040|CXXC5|51523|CXXC finger protein 5##BC041013|CXXC5|51523|CXXC finger protein 5##BC050046|CXXC5|51523|CXXC finger protein 5##BC017439|CXXC5|51523|CXXC finger protein 5##AB097005|CXXC5|51523|CXXC finger protein 5##AB097032|CXXC5|51523|CXXC finger protein 5##NM_016463|CXXC5|51523|CXXC finger protein 5	0.0	0.0	
chr6	149469483	149469613	reg1014082.p1	3.879	+	TSC_hg19_v1_chr6_+_149068165 NM_005715	-401339	+	TSC_hg19_v1_chr6_+_148664143 AJ507735 AB463240 BC063279	-805357	+	TSC_hg19_v1_chr6_+_148663973 AB018333	-805558	+	TSC_hg19_v1_chr6_+_149639095 AB018276 BC035910	169555	+	AK315038 NM_015093 AK307650	169893	+	AY340238 NM_001002255 BC130305 HQ258040	251960	+	NM_005715|UST|10090|uronyl-2-sulfotransferase##AJ507735|SASH1|23328|SAM and SH3 domain containing 1##BC063279|SASH1|23328|SAM and SH3 domain containing 1##AB018333|SASH1|23328|SAM and SH3 domain containing 1##AB018276|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##BC035910|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK315038|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##NM_015093|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AK307650|TAB2|23118|TGF-beta activated kinase 1/MAP3K7 binding protein 2##AY340238|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##NM_001002255|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##BC130305|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)##HQ258040|SUMO4|387082|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)	0.100754	0.0	
chrY	937151	937302	reg1013131.p1	3.879	+	NM_000451 NM_006883 U89331	-402148	+	AK293506 NM_013239	-639537	-	NM_018390 BC064136 BC005028 BC000888 BC032072	-789119	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	344358	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	400488	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	414357	+	NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	0.0	0.0	
chr11	64122626	64122783	reg1012083.p1	3.878	+	TSC_hg19_v1_chr11_+_64120348 AK126728	-2345	+	TSC_hg19_v1_chr11_+_64107692 BC151218 BC151222 NM_032251 AK090436 BC140822 BC140824 BC141866	-15002	+	TSC_hg19_v1_chr11_+_64085676 AF124993 AF110731 BC113723 BC113725 BC143849 BC171733 AF112212 AF242525 AF231705 CR457203 HQ258129 AJ249483	-36982	+	TSC_hg19_v1_chr11_+_64126642 AK223561 NM_001006944 NM_003942 AJ010119 AK292163 AK313567 BC047896 AK298507 BC028079 CU690526 AF074715	4027	+	AK290791 BC034384 NM_018484 AK129930	200421	+	AB050269 NM_144585 NM_153378	235577	+	AK126728|CCDC88B|283234|coiled-coil domain containing 88B##BC151218|CCDC88B|283234|coiled-coil domain containing 88B##BC151222|CCDC88B|283234|coiled-coil domain containing 88B##NM_032251|CCDC88B|283234|coiled-coil domain containing 88B##AK090436|CCDC88B|283234|coiled-coil domain containing 88B##BC140822|CCDC88B|283234|coiled-coil domain containing 88B##BC140824|CCDC88B|283234|coiled-coil domain containing 88B##BC141866|CCDC88B|283234|coiled-coil domain containing 88B##AF124993|PRDX5|25824|peroxiredoxin 5##AF110731|PRDX5|25824|peroxiredoxin 5##BC113723|PRDX5|25824|peroxiredoxin 5##BC113725|PRDX5|25824|peroxiredoxin 5##BC143849|PRDX5|25824|peroxiredoxin 5##BC171733|PRDX5|25824|peroxiredoxin 5##AF112212|PRDX5|25824|peroxiredoxin 5##AF242525|PRDX5|25824|peroxiredoxin 5##AF231705|PRDX5|25824|peroxiredoxin 5##CR457203|PRDX5|25824|peroxiredoxin 5##HQ258129|PRDX5|25824|peroxiredoxin 5##AJ249483|PRDX5|25824|peroxiredoxin 5##AK223561|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_001006944|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##NM_003942|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AJ010119|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK292163|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK313567|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC047896|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK298507|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##BC028079|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AF074715|RPS6KA4|8986|ribosomal protein S6 kinase, 90kDa, polypeptide 4##AK290791|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##BC034384|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##NM_018484|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##AK129930|SLC22A11|55867|solute carrier family 22 (organic anion/urate transporter), member 11##AB050269|SLC22A12|116085|solute carrier family 22 (organic anion/urate transporter), member 12##NM_144585|SLC22A12|116085|solute carrier family 22 (organic anion/urate transporter), member 12##NM_153378|SLC22A12|116085|solute carrier family 22 (organic anion/urate transporter), member 12	0.0	0.0	
chr14	23772271	23772339	reg1003839.p2	3.878	+	NM_020834 TSC_hg19_v1_chr14_-_23755308	-16980	-	AB037864 AF463523 TSC_hg19_v1_chr14_-_23755306 AK296927	-17036	-	TSC_hg19_v1_chr14_-_23652870 AL365342 NM_012244 Y18483 AL365346 AK223610	-119433	-	NM_001199864 NM_004050 AK289519 TSC_hg19_v1_chr14_+_23776072 BC104789 BC113522 D87461 BC011637 NM_001199839	3739	+	NM_004643	17091	+	TSC_hg19_v1_chr14_+_23790671 BX247976 BC010939	18369	+	NM_020834|HOMEZ|57594|homeobox and leucine zipper encoding##AB037864|HOMEZ|57594|homeobox and leucine zipper encoding##AF463523|HOMEZ|57594|homeobox and leucine zipper encoding##AK296927|HOMEZ|57594|homeobox and leucine zipper encoding##AL365342|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_012244|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##Y18483|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AL365346|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##AK223610|SLC7A8|23428|solute carrier family 7 (amino acid transporter light chain, L system), member 8##NM_001199864|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_004050|BCL2L2|599|BCL2-like 2##AK289519|BCL2L2|599|BCL2-like 2##BC104789|BCL2L2|599|BCL2-like 2##BC113522|BCL2L2|599|BCL2-like 2##D87461|BCL2L2|599|BCL2-like 2##BC011637|BCL2L2-PABPN1|100529063|BCL2L2-PABPN1 readthrough##NM_001199839|BCL2L2|599|BCL2-like 2##NM_004643|PABPN1|8106|poly(A) binding protein, nuclear 1##BX247976|PABPN1|8106|poly(A) binding protein, nuclear 1##BC010939|PABPN1|8106|poly(A) binding protein, nuclear 1	0.0	0.0	
chr2	169103496	169103592	reg1008685.p1	3.878	+	NM_020981	-428363	+	EF119711 EF119717 NM_001199144 NM_001199145	-1059752	+	EF119718 EF119719 EF119720 EF119721 EF119722 NM_001079810 NM_001199143 NM_152381 AK097519	-1358548	+	TSC_hg19_v1_chr2_-_169104075 BC146813 AY629298 AF099989 NM_013233 AF030403	529	-	TSC_hg19_v1_chr2_+_169312764 AK172775	209215	+	TSC_hg19_v1_chr2_+_169312801 NM_203463 BC109284 BC109285 AB527953	209331	+	NM_020981|B3GALT1|8708|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1##EF119711|XIRP2|129446|xin actin-binding repeat containing 2##EF119717|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199144|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199145|XIRP2|129446|xin actin-binding repeat containing 2##EF119718|XIRP2|129446|xin actin-binding repeat containing 2##EF119719|XIRP2|129446|xin actin-binding repeat containing 2##EF119720|XIRP2|129446|xin actin-binding repeat containing 2##EF119721|XIRP2|129446|xin actin-binding repeat containing 2##EF119722|XIRP2|129446|xin actin-binding repeat containing 2##NM_001079810|XIRP2|129446|xin actin-binding repeat containing 2##NM_001199143|XIRP2|129446|xin actin-binding repeat containing 2##NM_152381|XIRP2|129446|xin actin-binding repeat containing 2##AK097519|XIRP2|129446|xin actin-binding repeat containing 2##BC146813|STK39|27347|serine threonine kinase 39##AF099989|STK39|27347|serine threonine kinase 39##NM_013233|STK39|27347|serine threonine kinase 39##AF030403|STK39|27347|serine threonine kinase 39##AK172775|CERS6|253782|ceramide synthase 6##NM_203463|CERS6|253782|ceramide synthase 6##BC109284|CERS6|253782|ceramide synthase 6##BC109285|CERS6|253782|ceramide synthase 6	1.835364	0.0	denovo_WM_7:34:0.677	denovo_WM_7:49:0.660
chr5	113743803	113743949	reg1016995.p1	3.878	+	BC117454 BC117456 AF397175 AY258141 TSC_hg19_v1_chr5_+_113698618	-45415	+	AF239613 NM_021614 TSC_hg19_v1_chr5_+_113698062 AK289948	-45827	+	TSC_hg19_v1_chr5_+_112849405 AK096486 NM_022828 AK310855 BC019100 BC137285	-894480	+	BC015371 NM_170775 BC040722	25373	+	TSC_hg19_v1_chr5_-_114505606 AK316422 AK296389	761728	-	AB196558 AJ272269 BC130334 AK125426 BC045164 BC046096 NM_001017397 NM_001017398 NM_018700	772111	-	BC117454|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC117456|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF397175|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AY258141|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AF239613|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_021614|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK289948|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK096486|YTHDC2|64848|YTH domain containing 2##NM_022828|YTHDC2|64848|YTH domain containing 2##AK310855|YTHDC2|64848|YTH domain containing 2##BC019100|YTHDC2|64848|YTH domain containing 2##BC137285|YTHDC2|64848|YTH domain containing 2##BC015371|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##NM_170775|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##BC040722|KCNN2|3781|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2##AK316422|TRIM36|55521|tripartite motif containing 36##AK296389|TRIM36|55521|tripartite motif containing 36##AB196558|TRIM36|55521|tripartite motif containing 36##AJ272269|TRIM36|55521|tripartite motif containing 36##BC130334|TRIM36|55521|tripartite motif containing 36##AK125426|TRIM36|55521|tripartite motif containing 36##BC045164|TRIM36|55521|tripartite motif containing 36##BC046096|TRIM36|55521|tripartite motif containing 36##NM_001017397|TRIM36|55521|tripartite motif containing 36##NM_001017398|TRIM36|55521|tripartite motif containing 36##NM_018700|TRIM36|55521|tripartite motif containing 36	0.999409	0.0	denovo_WM_7:30:0.739
chr7	56074715	56074818	reg1007918.p1	3.878	+	TSC_hg19_v1_chr7_+_56032277 NM_001202469 NM_001483 AK097049 AK315648 BC030821 AF029786 BC000732 BC001837 AJ001259 AB528140 AM392838 BT007112 CR407612 CU674374 DQ892309 DQ895508	-42349	+	TSC_hg19_v1_chr7_+_56019577 AK026553 BC047445 AF077035 NM_015969 BC054031	-55185	+	AK097282 NM_182633 AB464411	-94418	+	TSC_hg19_v1_chr7_-_56101850 AK315235	27085	-	BC063614 BX537439 TSC_hg19_v1_chr7_-_56119246 AK054677 NM_004577 BC052958	44443	-	NM_001009186 NM_001762 TSC_hg19_v1_chr7_+_56119432 AB063318	44640	+	NM_001202469|GBAS|2631|glioblastoma amplified sequence##NM_001483|GBAS|2631|glioblastoma amplified sequence##AK097049|GBAS|2631|glioblastoma amplified sequence##AK315648|GBAS|2631|glioblastoma amplified sequence##BC030821|GBAS|2631|glioblastoma amplified sequence##AF029786|GBAS|2631|glioblastoma amplified sequence##BC000732|GBAS|2631|glioblastoma amplified sequence##BC001837|GBAS|2631|glioblastoma amplified sequence##AJ001259|GBAS|2631|glioblastoma amplified sequence##AM392838|GBAS|2631|glioblastoma amplified sequence##BT007112|GBAS|2631|glioblastoma amplified sequence##CR407612|GBAS|2631|glioblastoma amplified sequence##DQ892309|GBAS|2631|glioblastoma amplified sequence##DQ895508|GBAS|2631|glioblastoma amplified sequence##AK026553|MRPS17|51373|mitochondrial ribosomal protein S17##BC047445|MRPS17|51373|mitochondrial ribosomal protein S17##AF077035|MRPS17|51373|mitochondrial ribosomal protein S17##NM_015969|MRPS17|51373|mitochondrial ribosomal protein S17##BC054031|MRPS17|51373|mitochondrial ribosomal protein S17##AK097282|ZNF713|349075|zinc finger protein 713##NM_182633|ZNF713|349075|zinc finger protein 713##AK315235|PSPH|5723|phosphoserine phosphatase##BC063614|PSPH|5723|phosphoserine phosphatase##BX537439|PSPH|5723|phosphoserine phosphatase##AK054677|PSPH|5723|phosphoserine phosphatase##NM_004577|PSPH|5723|phosphoserine phosphatase##BC052958|PSPH|5723|phosphoserine phosphatase##NM_001009186|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##NM_001762|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##AB063318|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)	0.998946	0.0	
chr11	35187391	35187571	reg1002732.p1	3.877	+	AF098641 TSC_hg19_v1_chr11_+_35160882 EF581837 AB384769 CU678692 AK290424 FJ216964 M25078	-26621	+	TSC_hg19_v1_chr11_+_35160821 M59040	-26663	+	TSC_hg19_v1_chr11_+_35160717 AK297776 D28447 X66733 X55150 BC004372 BC052287 AY101193 BC067348 AY101192 M24915 X56794 U40373 S66400	-26747	+	TSC_hg19_v1_chr11_+_35198199 AK129808	10731	+	CR627009 TSC_hg19_v1_chr11_-_35278776 CR626999	91344	-	AB527302 AB209444 U03505 D85884 Z32517 AK298769 BC132768 AY066021 TSC_hg19_v1_chr11_-_35440905	253230	-	AF098641|CD44|960|CD44 molecule (Indian blood group)##EF581837|CD44|960|CD44 molecule (Indian blood group)##AK290424|CD44|960|CD44 molecule (Indian blood group)##FJ216964|CD44|960|CD44 molecule (Indian blood group)##M25078|CD44|960|CD44 molecule (Indian blood group)##M59040|CD44|960|CD44 molecule (Indian blood group)##AK297776|CD44|960|CD44 molecule (Indian blood group)##D28447|CD44|960|CD44 molecule (Indian blood group)##X66733|CD44|960|CD44 molecule (Indian blood group)##X55150|CD44|960|CD44 molecule (Indian blood group)##BC004372|CD44|960|CD44 molecule (Indian blood group)##BC052287|CD44|960|CD44 molecule (Indian blood group)##AY101193|CD44|960|CD44 molecule (Indian blood group)##BC067348|CD44|960|CD44 molecule (Indian blood group)##AY101192|CD44|960|CD44 molecule (Indian blood group)##M24915|CD44|960|CD44 molecule (Indian blood group)##X56794|CD44|960|CD44 molecule (Indian blood group)##U40373|CD44|960|CD44 molecule (Indian blood group)##S66400|CD44|960|CD44 molecule (Indian blood group)##AK129808|CD44|960|CD44 molecule (Indian blood group)##CR627009|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##CR626999|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AB209444|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##U03505|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##D85884|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##Z32517|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AK298769|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##BC132768|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2##AY066021|SLC1A2|6506|solute carrier family 1 (glial high affinity glutamate transporter), member 2	0.134503	0.0	
chr11	71934301	71934404	reg1016832.p1	3.877	+	NM_000803 NM_001113534 NM_001113535 NM_001113536 AK222539 AK222643 BC058036 BC027894 EU832652 EU832730	-6472	+	NM_016729 U78793 U78794 S73490 AB590148 DQ892744 DQ895990 BT007158 CR542019 M25317 M35069	-31123	+	NM_000802	-33394	+	Y14385 BC140853 NM_001567	1500	+	BC041564 TSC_hg19_v1_chr11_-_71955201	20850	-	TSC_hg19_v1_chr11_-_71955221 AK290645 NM_005169	20883	-	NM_000803|FOLR2|2350|folate receptor 2 (fetal)##NM_001113534|FOLR2|2350|folate receptor 2 (fetal)##NM_001113535|FOLR2|2350|folate receptor 2 (fetal)##NM_001113536|FOLR2|2350|folate receptor 2 (fetal)##AK222539|FOLR2|2350|folate receptor 2 (fetal)##AK222643|FOLR2|2350|folate receptor 2 (fetal)##BC058036|FOLR2|2350|folate receptor 2 (fetal)##BC027894|FOLR2|2350|folate receptor 2 (fetal)##EU832652|FOLR2|2350|folate receptor 2 (fetal)##EU832730|FOLR2|2350|folate receptor 2 (fetal)##NM_016729|FOLR1|2348|folate receptor 1 (adult)##U78793|FOLR1|2348|folate receptor 1 (adult)##U78794|FOLR1|2348|folate receptor 1 (adult)##S73490|FOLR1|2348|folate receptor 1 (adult)##DQ892744|FOLR1|2348|folate receptor 1 (adult)##DQ895990|FOLR1|2348|folate receptor 1 (adult)##BT007158|FOLR1|2348|folate receptor 1 (adult)##CR542019|FOLR1|2348|folate receptor 1 (adult)##M25317|FOLR1|2348|folate receptor 1 (adult)##M35069|FOLR1|2348|folate receptor 1 (adult)##NM_000802|FOLR1|2348|folate receptor 1 (adult)##Y14385|INPPL1|3636|inositol polyphosphate phosphatase-like 1##BC140853|INPPL1|3636|inositol polyphosphate phosphatase-like 1##NM_001567|INPPL1|3636|inositol polyphosphate phosphatase-like 1##BC041564|PHOX2A|401|paired-like homeobox 2a##AK290645|PHOX2A|401|paired-like homeobox 2a##NM_005169|PHOX2A|401|paired-like homeobox 2a	0.0	0.119092	
chr13	41470363	41470431	reg1001873.p2	3.877	+	AF177333 TSC_hg19_v1_chr13_+_41363756	-106631	+	TSC_hg19_v1_chr13_+_41363716 AK313602 AK296862 AF112968	-106713	+	NM_014252 TSC_hg19_v1_chr13_+_41363596 BC002702	-106808	+	TSC_hg19_v1_chr13_-_41495877 AK096993 BC047078 BC020814	25468	-	DQ891709 DQ894886 AB385566 CU688886 TSC_hg19_v1_chr13_-_41556203	85799	-	AK304289 BC010575 BC030507 NM_001145353	85991	-	AF177333|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK313602|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK296862|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AF112968|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##NM_014252|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##BC002702|SLC25A15|10166|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15##AK096993|LOC100616668|100616668|TPTE2 pseudogene##BC047078|LOC100616668|100616668|TPTE2 pseudogene##BC020814|SUGT1P3|283507|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3##DQ891709|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##DQ894886|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)	0.997067	0.0	denovo_WM_7:-41:0.313	denovo_WM_7:-42:0.313	denovo_WM_7:-43:0.313
chr19	9938419	9938599	reg1011192.p2	3.877	+	BC001586 AK000195 NM_017703 TSC_hg19_v1_chr19_-_9929754 AK093760 AK027004	-8784	-	TSC_hg19_v1_chr19_-_9929504 BX647073	-8997	-	CU674772 TSC_hg19_v1_chr19_-_9929496	-9017	-	NM_001048241 TSC_hg19_v1_chr19_+_9938580 AK128885 AK311889 NM_024292	58	+	TSC_hg19_v1_chr19_+_9938597 AK309258 AF313915 BC007053 BC110839	104	+	NM_006221 TSC_hg19_v1_chr19_+_9946010 AK097558 AK291074 BC002899 U49070 AF086512 AB385559 BT019331 CR407654 CU678280 DQ892978 DQ896226	7442	+	BC001586|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK000195|FBXL12|54850|F-box and leucine-rich repeat protein 12##NM_017703|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK093760|FBXL12|54850|F-box and leucine-rich repeat protein 12##AK027004|FBXL12|54850|F-box and leucine-rich repeat protein 12##BX647073|FBXL12|54850|F-box and leucine-rich repeat protein 12##NM_001048241|UBL5|59286|ubiquitin-like 5##AK128885|UBL5|59286|ubiquitin-like 5##AK311889|UBL5|59286|ubiquitin-like 5##NM_024292|UBL5|59286|ubiquitin-like 5##AK309258|UBL5|59286|ubiquitin-like 5##AF313915|UBL5|59286|ubiquitin-like 5##BC007053|UBL5|59286|ubiquitin-like 5##BC110839|UBL5|59286|ubiquitin-like 5##NM_006221|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK097558|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AK291074|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BC002899|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##U49070|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##AF086512|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##BT019331|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##CR407654|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ892978|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1##DQ896226|PIN1|5300|peptidylprolyl cis/trans isomerase, NIMA-interacting 1	0.0	0.0	
chr2	32233637	32233725	reg1018768.p1	3.877	+	EU832809 GQ129244 HQ258121 M74047 EF560740 AK316597 BC112252 BC113641 NM_000348	-427678	-	TSC_hg19_v1_chr2_-_31637599 NM_000379	-596070	-	TSC_hg19_v1_chr2_-_31637569 U39487 D11456 U06117	-596110	-	TSC_hg19_v1_chr2_-_32235713 AF363446 BC018733 NM_001137602 NM_015955	1977	-	TSC_hg19_v1_chr2_-_32235732 AB041018	2047	-	TSC_hg19_v1_chr2_-_32235815 BC070046	2141	-	EU832809|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##GQ129244|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##HQ258121|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##M74047|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##EF560740|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##AK316597|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC112252|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##BC113641|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000348|SRD5A2|6716|steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)##NM_000379|XDH|7498|xanthine dehydrogenase##U39487|XDH|7498|xanthine dehydrogenase##D11456|XDH|7498|xanthine dehydrogenase##U06117|XDH|7498|xanthine dehydrogenase##AF363446|MEMO1|51072|mediator of cell motility 1##BC018733|MEMO1|51072|mediator of cell motility 1##NM_001137602|MEMO1|51072|mediator of cell motility 1##NM_015955|MEMO1|51072|mediator of cell motility 1##AB041018|MEMO1|51072|mediator of cell motility 1##BC070046|MEMO1|51072|mediator of cell motility 1	0.10889	0.0	
chr4	20726765	20726878	reg1011503.p1	3.877	+	TSC_hg19_v1_chr4_+_20702080 AK307786 NM_001130727 NM_145048 AK294077 AK297556 AK307355 AK315482 AK291544 AK307092	-24754	+	AB017168 NM_004787 BC117190 BC143978 AF133270	-471485	+	AK096181 TSC_hg19_v1_chr4_-_18023379 CU691482 BC037322 AK299939 NM_001166139 NM_153686	-2703355	-	DQ148492 AK294188 TSC_hg19_v1_chr4_-_20985711	258808	-	AY118170 DQ148489 NM_147183 AK290998	578748	-	DQ148491 NM_001035004	819457	-	AK307786|PACRGL|133015|PARK2 co-regulated-like##NM_001130727|PACRGL|133015|PARK2 co-regulated-like##NM_145048|PACRGL|133015|PARK2 co-regulated-like##AK294077|PACRGL|133015|PARK2 co-regulated-like##AK297556|PACRGL|133015|PARK2 co-regulated-like##AK307355|PACRGL|133015|PARK2 co-regulated-like##AK315482|PACRGL|133015|PARK2 co-regulated-like##AK291544|PACRGL|133015|PARK2 co-regulated-like##AK307092|PACRGL|133015|PARK2 co-regulated-like##AB017168|SLIT2|9353|slit homolog 2 (Drosophila)##NM_004787|SLIT2|9353|slit homolog 2 (Drosophila)##BC117190|SLIT2|9353|slit homolog 2 (Drosophila)##BC143978|SLIT2|9353|slit homolog 2 (Drosophila)##AF133270|SLIT2|9353|slit homolog 2 (Drosophila)##AK096181|LCORL|254251|ligand dependent nuclear receptor corepressor-like##BC037322|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AK299939|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_001166139|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_153686|LCORL|254251|ligand dependent nuclear receptor corepressor-like##DQ148492|KCNIP4|80333|Kv channel interacting protein 4##AK294188|KCNIP4|80333|Kv channel interacting protein 4##AY118170|KCNIP4|80333|Kv channel interacting protein 4##DQ148489|KCNIP4|80333|Kv channel interacting protein 4##NM_147183|KCNIP4|80333|Kv channel interacting protein 4##AK290998|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4	0.0	0.0	
chr5	158336131	158336245	reg1012166.p2	3.877	+	AF434813 CU678734 TSC_hg19_v1_chr5_-_157286136 BC004467 D79993 AK300257 AK092765 AX747715 NM_001195555 NM_001195556 NM_014666	-1050098	-	AK055297 TSC_hg19_v1_chr5_+_157184422	-1151808	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	-1165448	+	TSC_hg19_v1_chr5_-_158526431 AF208502 AK304438 AB527458 EU446855 EU832793 EU832804 GQ129329 GQ129403 HQ257943	190269	-	BC041178 TSC_hg19_v1_chr5_-_158526727 AK289712 BC038805 NM_024007	190554	-	AK304228 NM_001199382	298460	-	AF434813|CLINT1|9685|clathrin interactor 1##BC004467|CLINT1|9685|clathrin interactor 1##D79993|CLINT1|9685|clathrin interactor 1##AK300257|CLINT1|9685|clathrin interactor 1##AK092765|CLINT1|9685|clathrin interactor 1##NM_001195555|CLINT1|9685|clathrin interactor 1##NM_001195556|CLINT1|9685|clathrin interactor 1##NM_014666|CLINT1|9685|clathrin interactor 1##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated##AF208502|EBF1|1879|early B-cell factor 1##AK304438|EBF1|1879|early B-cell factor 1##EU446855|EBF1|1879|early B-cell factor 1##EU832793|EBF1|1879|early B-cell factor 1##EU832804|EBF1|1879|early B-cell factor 1##GQ129329|EBF1|1879|early B-cell factor 1##GQ129403|EBF1|1879|early B-cell factor 1##HQ257943|EBF1|1879|early B-cell factor 1##BC041178|EBF1|1879|early B-cell factor 1##AK289712|EBF1|1879|early B-cell factor 1##BC038805|EBF1|1879|early B-cell factor 1##NM_024007|EBF1|1879|early B-cell factor 1##AK304228|RNF145|153830|ring finger protein 145##NM_001199382|RNF145|153830|ring finger protein 145	1.525521	0.0	denovo_WM_7:-34:0.486	denovo_WM_7:-51:0.837
chr6	21192001	21192117	reg1012139.p1	3.877	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-657336	+	CR749285 NM_001243076	-788026	+	TSC_hg19_v1_chr6_+_20402109 BC099908 NM_001949	-789956	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	402313	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	474600	+	BC015850 NM_000948	1105670	-	AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##BC099908|E2F3|1871|E2F transcription factor 3##NM_001949|E2F3|1871|E2F transcription factor 3##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin	0.999506	0.0	denovo_WM_7:-58:0.425	denovo_WM_7:-59:0.425
chr7	120766986	120767088	reg1015289.p2	3.877	+	AK025639 AK225313 TSC_hg19_v1_chr7_+_120702920	-64164	+	NM_001105533	-137593	+	TSC_hg19_v1_chr7_+_120628867 AL832638	-138141	+	AF152584 NM_016087	198383	+	AF169963 NM_057168	202052	+	TSC_hg19_v1_chr7_-_121036340 D87120 BC024200 BC046932	269300	-	AK025639|C7orf58|79974|chromosome 7 open reading frame 58##AK225313|C7orf58|79974|chromosome 7 open reading frame 58##NM_001105533|C7orf58|79974|chromosome 7 open reading frame 58##AL832638|C7orf58|79974|chromosome 7 open reading frame 58##AF152584|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_016087|WNT16|51384|wingless-type MMTV integration site family, member 16##AF169963|WNT16|51384|wingless-type MMTV integration site family, member 16##NM_057168|WNT16|51384|wingless-type MMTV integration site family, member 16##D87120|FAM3C|10447|family with sequence similarity 3, member C##BC024200|FAM3C|10447|family with sequence similarity 3, member C##BC046932|FAM3C|10447|family with sequence similarity 3, member C	0.0	0.168646	
chr8	146078838	146078954	reg1012160.p1	3.877	+	TSC_hg19_v1_chr8_-_146078452 NM_001081004 NM_014066	-446	-	TSC_hg19_v1_chr8_-_146078434 AK001477 BC002672	-468	-	TSC_hg19_v1_chr8_-_146078415 BC003055 AK023070 BC065729	-510	-	TSC_hg19_v1_chr8_-_146078881 NM_001081003	5	-	TSC_hg19_v1_chr8_-_146126839 AK294282 BX648173 AK095705 AB208810 BC017091 AK054888 NM_001109689 NM_021061 BC107579	47923	-	TSC_hg19_v1_chr8_-_146176267 BC010996 AK226016 AK096815 AK127625 DQ117529 NM_001029976 NM_006958	97351	-	NM_001081004|COMMD5|28991|COMM domain containing 5##NM_014066|COMMD5|28991|COMM domain containing 5##AK001477|COMMD5|28991|COMM domain containing 5##BC002672|COMMD5|28991|COMM domain containing 5##BC003055|COMMD5|28991|COMM domain containing 5##AK023070|COMMD5|28991|COMM domain containing 5##BC065729|COMMD5|28991|COMM domain containing 5##NM_001081003|COMMD5|28991|COMM domain containing 5##AK294282|ZNF250|58500|zinc finger protein 250##BX648173|ZNF250|58500|zinc finger protein 250##AK095705|ZNF250|58500|zinc finger protein 250##AB208810|ZNF250|58500|zinc finger protein 250##BC017091|ZNF250|58500|zinc finger protein 250##AK054888|ZNF250|58500|zinc finger protein 250##NM_001109689|ZNF250|58500|zinc finger protein 250##NM_021061|ZNF250|58500|zinc finger protein 250##BC107579|ZNF250|58500|zinc finger protein 250##BC010996|ZNF16|7564|zinc finger protein 16##AK226016|ZNF16|7564|zinc finger protein 16##AK096815|ZNF16|7564|zinc finger protein 16##AK127625|ZNF16|7564|zinc finger protein 16##DQ117529|ZNF16|7564|zinc finger protein 16##NM_001029976|ZNF16|7564|zinc finger protein 16##NM_006958|ZNF16|7564|zinc finger protein 16	0.0	0.0	
chr11	33060644	33060778	reg1013604.p1	3.876	+	AF447588 NM_139160	-22984	+	TSC_hg19_v1_chr11_+_33037423 BC030970 NM_001077242 AK294934 BC011446 AJ245600 AK295960 EU446553 CU689058	-23263	+	TSC_hg19_v1_chr11_+_32914677 BC112935 NM_001076786	-146136	+	NM_018393 AK090646 TSC_hg19_v1_chr11_+_33061117 BC041696	371	+	TSC_hg19_v1_chr11_+_33061291 BC030582	611	+	NM_001145541 AK002198	857	+	AF447588|DEPDC7|91614|DEP domain containing 7##NM_139160|DEPDC7|91614|DEP domain containing 7##BC030970|DEPDC7|91614|DEP domain containing 7##NM_001077242|DEPDC7|91614|DEP domain containing 7##AK294934|DEPDC7|91614|DEP domain containing 7##BC011446|DEPDC7|91614|DEP domain containing 7##AJ245600|DEPDC7|91614|DEP domain containing 7##AK295960|DEPDC7|91614|DEP domain containing 7##EU446553|DEPDC7|91614|DEP domain containing 7##BC112935|QSER1|79832|glutamine and serine rich 1##NM_001076786|QSER1|79832|glutamine and serine rich 1##NM_018393|TCP11L1|55346|t-complex 11 (mouse)-like 1##AK090646|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC041696|TCP11L1|55346|t-complex 11 (mouse)-like 1##BC030582|TCP11L1|55346|t-complex 11 (mouse)-like 1##NM_001145541|TCP11L1|55346|t-complex 11 (mouse)-like 1##AK002198|TCP11L1|55346|t-complex 11 (mouse)-like 1	0.0	0.0	
chr15	64908372	64908488	reg1013520.p1	3.876	+	AB056456 TSC_hg19_v1_chr15_+_64885153	-23277	+	NM_015042	-116812	+	TSC_hg19_v1_chr15_+_64752786 BC142647	-155571	+	BC119629 BC119630 BC148316 BC127630 TSC_hg19_v1_chr15_-_64995360 BC127631 AF242520 AF242521	86930	-	TSC_hg19_v1_chr15_-_64995415 AF057297 BC063577 BC073877 BC035493 BC092483	86972	-	TSC_hg19_v1_chr15_-_64995461 BC047755 NM_002537	87039	-	NM_015042|ZNF609|23060|zinc finger protein 609##BC142647|ZNF609|23060|zinc finger protein 609##BC119629|OAZ2|4947|ornithine decarboxylase antizyme 2##BC119630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC148316|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127631|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242520|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242521|OAZ2|4947|ornithine decarboxylase antizyme 2##AF057297|OAZ2|4947|ornithine decarboxylase antizyme 2##BC063577|OAZ2|4947|ornithine decarboxylase antizyme 2##BC073877|OAZ2|4947|ornithine decarboxylase antizyme 2##BC035493|OAZ2|4947|ornithine decarboxylase antizyme 2##BC092483|OAZ2|4947|ornithine decarboxylase antizyme 2##BC047755|OAZ2|4947|ornithine decarboxylase antizyme 2##NM_002537|OAZ2|4947|ornithine decarboxylase antizyme 2	0.106676	0.0	
chr16	61085514	61085580	reg1017456.p1	3.876	+	CU674254 TSC_hg19_v1_chr16_-_58768221 DQ891883 DQ895068 M22632 BC000525 AK290847 AK223271 AK302249 AK295993 AK098313 NM_002080	-2317350	-	TSC_hg19_v1_chr16_-_58718647 BC063399 AK222932 AK022786 AK001677 AK299424 NM_018231	-2366891	-	TSC_hg19_v1_chr16_-_58663742 BC040523 AL833549 NM_016284 NM_206999	-2421802	-	AK124734 NM_001796	985191	-	AY380223 AY380224 D21254 NM_001797 TSC_hg19_v1_chr16_-_65155922	4070355	-	AK291251 AK308000 TSC_hg19_v1_chr16_-_65155967	4070421	-	DQ891883|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##DQ895068|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##M22632|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC000525|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK290847|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK223271|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK302249|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK295993|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##AK098313|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##NM_002080|GOT2|2806|glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)##BC063399|SLC38A7|55238|solute carrier family 38, member 7##AK222932|SLC38A7|55238|solute carrier family 38, member 7##AK022786|SLC38A7|55238|solute carrier family 38, member 7##AK001677|SLC38A7|55238|solute carrier family 38, member 7##AK299424|SLC38A7|55238|solute carrier family 38, member 7##NM_018231|SLC38A7|55238|solute carrier family 38, member 7##BC040523|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AL833549|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_016284|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##NM_206999|CNOT1|23019|CCR4-NOT transcription complex, subunit 1##AK124734|CDH8|1006|cadherin 8, type 2##NM_001796|CDH8|1006|cadherin 8, type 2##D21254|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##NM_001797|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK291251|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)##AK308000|CDH11|1009|cadherin 11, type 2, OB-cadherin (osteoblast)	0.0	0.0	
chr16	75502810	75502911	reg1009998.p1	3.876	+	TSC_hg19_v1_chr16_-_75498598 BC018082 NM_145254 AK298475 BX647432 BX648429 BX648484 AK311919	-4259	-	AM392693 AM393662 AY302139 CU676164 TSC_hg19_v1_chr16_-_75498577	-4322	-	TSC_hg19_v1_chr16_-_75498315 AK094930	-4563	-	AF280086 NM_021615	26065	-	TSC_hg19_v1_chr16_-_75529279 AF219990	26419	-	TSC_hg19_v1_chr16_-_75529303 AK311527 AK093904	26437	-	BC018082|TMEM170A|124491|transmembrane protein 170A##NM_145254|TMEM170A|124491|transmembrane protein 170A##AK298475|TMEM170A|124491|transmembrane protein 170A##BX647432|TMEM170A|124491|transmembrane protein 170A##BX648429|TMEM170A|124491|transmembrane protein 170A##BX648484|TMEM170A|124491|transmembrane protein 170A##AK311919|TMEM170A|124491|transmembrane protein 170A##AY302139|TMEM170A|124491|transmembrane protein 170A##AK094930|TMEM170A|124491|transmembrane protein 170A##AF280086|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6##NM_021615|CHST6|4166|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6	1.054246	0.0	
chr1	81580009	81580113	reg1013224.p1	3.876	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-2107634	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-2464563	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	-2493930	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	191866	+	AF104266 AF104938 AF104939 NM_012302	686020	+	AK097722 TSC_hg19_v1_chr1_-_84326308	2746207	-	BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.991045	0.172211	denovo_WM_7:-7:0.243	denovo_WM_7:-8:0.243	denovo_WM_7:-9:0.243	denovo_WM_7:-10:0.243
chr2	7062652	7062752	reg1015462.p2	3.876	+	TSC_hg19_v1_chr2_+_7057585 NM_014746 BC050373 AK293854 D79983	-5115	+	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	-44839	+	TSC_hg19_v1_chr2_-_7006650 AK308509	-55999	-	NM_002166 AY634687 TSC_hg19_v1_chr2_+_8822185 AK222682 BC030639 M97796 AK311988 D13891 AB463777 DQ890858 DQ894013	1759501	+	BC130610 TSC_hg19_v1_chr2_-_8977744 AK294832 AB033076 AL133620 AK296459 AB621829 AK057125 NM_020738	1915017	-	AB305044 TSC_hg19_v1_chr2_-_9143785 AK295907 BC146871 BC157827 AK027321 BC016005 NM_138799	2081119	-	NM_014746|RNF144A|9781|ring finger protein 144A##BC050373|RNF144A|9781|ring finger protein 144A##AK293854|RNF144A|9781|ring finger protein 144A##D79983|RNF144A|9781|ring finger protein 144A##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_002166|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AY634687|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK222682|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC030639|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##M97796|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##AK311988|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##D13891|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ890858|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##DQ894013|ID2|3398|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein##BC130610|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK294832|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB033076|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AL133620|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK296459|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AK057125|KIDINS220|57498|kinase D-interacting substrate, 220kDa##NM_020738|KIDINS220|57498|kinase D-interacting substrate, 220kDa##AB305044|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK295907|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC146871|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC157827|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##AK027321|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##BC016005|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2##NM_138799|MBOAT2|129642|membrane bound O-acyltransferase domain containing 2	1.069646	0.046564	denovo_WM_7:63:0.414	denovo_WM_7:64:0.471
chr3	49341025	49341166	reg1007155.p2	3.876	+	BC032616 CU687502 CU691014 AK125642 BC061697 BC053629 NM_198562	-26701	-	AK303033 NM_001135197 BC015057 AK058049	-104135	+	BC036202 NM_178173	-105235	+	TSC_hg19_v1_chr3_-_49377456 AF017306	36352	-	AF017305 U20657 TSC_hg19_v1_chr3_-_49377473 AK222725 AK223292 BC068017	36373	-	TSC_hg19_v1_chr3_-_49377482 AK291795	36385	-	BC032616|C3orf62|375341|chromosome 3 open reading frame 62##AK125642|C3orf62|375341|chromosome 3 open reading frame 62##BC061697|C3orf62|375341|chromosome 3 open reading frame 62##BC053629|C3orf62|375341|chromosome 3 open reading frame 62##NM_198562|C3orf62|375341|chromosome 3 open reading frame 62##AK303033|CCDC36|339834|coiled-coil domain containing 36##NM_001135197|CCDC36|339834|coiled-coil domain containing 36##BC015057|CCDC36|339834|coiled-coil domain containing 36##AK058049|CCDC36|339834|coiled-coil domain containing 36##BC036202|CCDC36|339834|coiled-coil domain containing 36##NM_178173|CCDC36|339834|coiled-coil domain containing 36##AF017306|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AF017305|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##U20657|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK222725|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK223292|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##BC068017|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)##AK291795|USP4|7375|ubiquitin specific peptidase 4 (proto-oncogene)	0.982642	0.0	denovo_WM_7:99:0.886
chr5	1792876	1792962	reg1008758.p1	3.876	+	TSC_hg19_v1_chr5_-_1634100 BC019918 BC045555 AK311210 AK311251	-158801	-	TSC_hg19_v1_chr5_-_1634097 BC020552 BC053586 BC044220 AK308990 AK315872 BC067863 BC014604 AK307076	-158850	-	TSC_hg19_v1_chr5_-_1594617 BC150558	-198288	-	TSC_hg19_v1_chr5_-_1799926 AB049654 AF151109 AF155653 BC020642	7004	-	TSC_hg19_v1_chr5_-_1799952 AK312001 BC104652 EF036487 NM_032479	7053	-	TSC_hg19_v1_chr5_+_1801520 NM_004553 AK022503 BC038664 AF044959 BC046155 CR456880 HQ257915	8593	+	BC019918|LOC728613|728613|programmed cell death 6 pseudogene##BC045555|LOC728613|728613|programmed cell death 6 pseudogene##AK311210|LOC728613|728613|programmed cell death 6 pseudogene##BC020552|LOC728613|728613|programmed cell death 6 pseudogene##BC053586|LOC728613|728613|programmed cell death 6 pseudogene##BC044220|LOC728613|728613|programmed cell death 6 pseudogene##AK308990|LOC728613|728613|programmed cell death 6 pseudogene##BC067863|LOC728613|728613|programmed cell death 6 pseudogene##BC014604|LOC728613|728613|programmed cell death 6 pseudogene##AK307076|LOC728613|728613|programmed cell death 6 pseudogene##BC150558|SDHAP3|728609|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3##AB049654|MRPL36|64979|mitochondrial ribosomal protein L36##AF151109|MRPL36|64979|mitochondrial ribosomal protein L36##AF155653|MRPL36|64979|mitochondrial ribosomal protein L36##BC020642|MRPL36|64979|mitochondrial ribosomal protein L36##AK312001|MRPL36|64979|mitochondrial ribosomal protein L36##BC104652|MRPL36|64979|mitochondrial ribosomal protein L36##EF036487|MRPL36|64979|mitochondrial ribosomal protein L36##NM_032479|MRPL36|64979|mitochondrial ribosomal protein L36##NM_004553|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##AK022503|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##BC038664|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##AF044959|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##BC046155|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##CR456880|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)##HQ257915|NDUFS6|4726|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)	0.0	0.0	
chr5	88605100	88605238	reg1012293.p2	3.876	+	AL833268 AL833274 NM_001131005 NM_001193347	-405275	-	TSC_hg19_v1_chr5_+_88185266 AK093634	-419905	+	TSC_hg19_v1_chr5_+_88185094 AL050132	-420049	+	BT006688 CR450346 Y12473 BC093793 BC112040 TSC_hg19_v1_chr5_-_89705574 BC005383 NM_004365	1100370	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	1165013	-	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	1165409	-	AL833268|MEF2C|4208|myocyte enhancer factor 2C##AL833274|MEF2C|4208|myocyte enhancer factor 2C##NM_001131005|MEF2C|4208|myocyte enhancer factor 2C##NM_001193347|MEF2C|4208|myocyte enhancer factor 2C##AK093634|RPS6|6194|ribosomal protein S6##BT006688|CETN3|1070|centrin, EF-hand protein, 3##CR450346|CETN3|1070|centrin, EF-hand protein, 3##Y12473|CETN3|1070|centrin, EF-hand protein, 3##BC093793|CETN3|1070|centrin, EF-hand protein, 3##BC112040|CETN3|1070|centrin, EF-hand protein, 3##BC005383|CETN3|1070|centrin, EF-hand protein, 3##NM_004365|CETN3|1070|centrin, EF-hand protein, 3##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2	0.998839	0.0	denovo_WM_7:-13:0.254	denovo_WM_7:-14:0.655
chr6	2079088	2079174	reg1002475.p1	3.876	+	TSC_hg19_v1_chr6_+_1611545 BC169307	-467557	+	BC134421 NM_001453	-468451	+	NM_001452 U13220 AB463646	-689006	+	AF040260 NM_001253846	97093	-	CR541929 CR541947 DQ892789 DQ896036 AF042377 TSC_hg19_v1_chr6_-_2245809 AK130651 AK313953 BC000117 NM_001500	166667	-	TSC_hg19_v1_chr6_+_2245995 AK023629	166882	+	BC169307|FOXC1|2296|forkhead box C1##BC134421|FOXC1|2296|forkhead box C1##NM_001453|FOXC1|2296|forkhead box C1##NM_001452|FOXF2|2295|forkhead box F2##U13220|FOXF2|2295|forkhead box F2##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541929|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541947|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ892789|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ896036|GMDS|2762|GDP-mannose 4,6-dehydratase##AF042377|GMDS|2762|GDP-mannose 4,6-dehydratase##AK130651|GMDS|2762|GDP-mannose 4,6-dehydratase##AK313953|GMDS|2762|GDP-mannose 4,6-dehydratase##BC000117|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001500|GMDS|2762|GDP-mannose 4,6-dehydratase	0.0	0.0	
chr1	209980141	209980230	reg1015706.p1	3.875	+	BC014852 AK312857 AK296960 TSC_hg19_v1_chr1_-_209979488 NM_001206696 NM_006147	-732	-	TSC_hg19_v1_chr1_-_209957872 BC039719 NM_152485 AK057807	-22298	-	TSC_hg19_v1_chr1_+_209941909 AK126139	-38269	+	TSC_hg19_v1_chr1_+_210001335 NM_014388 AK314061 AK289613	21118	+	BC022964 TSC_hg19_v1_chr1_+_210001361	21171	+	TSC_hg19_v1_chr1_+_210001363 CR749825	21184	+	BC014852|IRF6|3664|interferon regulatory factor 6##AK312857|IRF6|3664|interferon regulatory factor 6##AK296960|IRF6|3664|interferon regulatory factor 6##NM_001206696|IRF6|3664|interferon regulatory factor 6##NM_006147|IRF6|3664|interferon regulatory factor 6##BC039719|C1orf74|148304|chromosome 1 open reading frame 74##NM_152485|C1orf74|148304|chromosome 1 open reading frame 74##AK057807|C1orf74|148304|chromosome 1 open reading frame 74##AK126139|TRAF3IP3|80342|TRAF3 interacting protein 3##NM_014388|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##AK314061|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##AK289613|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##BC022964|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)##CR749825|DIEXF|27042|digestive organ expansion factor homolog (zebrafish)	2.400528	0.0	denovo_WM_7:-92:0.212
chr1	25073116	25073296	reg1009966.p1	3.875	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-1201	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-1273	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-1375	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	183219	-	TSC_hg19_v1_chr1_-_25256761 AK301044	183533	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	183580	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.0	0.0	
chr12	92864304	92864449	reg1009864.p1	3.875	+	AJ845168 NM_001025232	-42453	-	AJ845165 AJ845166 NM_001025233	-46642	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-324733	-	NM_001037671 NM_001178097	232242	+	NM_001004330 AK128530	265911	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	458562	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.0	0.0	
chr17	11924964	11925097	reg1010684.p1	3.875	+	TSC_hg19_v1_chr17_+_11924150 BC036032 NM_003010 BC060764 AK131544 AK313053 U17743 AK294923 L36870 BC050386 AB590846 BT019676 CR536564	-849	+	AK092656 AX747657 NM_144680 TSC_hg19_v1_chr17_-_11900782 AY491053 AK127908	-24277	-	NM_004662 X99947	-138810	+	NM_001146312 NM_153604 TSC_hg19_v1_chr17_+_12569210 AY764180	644179	+	AK128608 TSC_hg19_v1_chr17_+_12569334 AK292885	644291	+	TSC_hg19_v1_chr17_+_12569389 BC126307 BC143391 AF532596	644404	+	BC036032|MAP2K4|6416|mitogen-activated protein kinase kinase 4##NM_003010|MAP2K4|6416|mitogen-activated protein kinase kinase 4##BC060764|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK131544|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK313053|MAP2K4|6416|mitogen-activated protein kinase kinase 4##U17743|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK294923|MAP2K4|6416|mitogen-activated protein kinase kinase 4##L36870|MAP2K4|6416|mitogen-activated protein kinase kinase 4##BC050386|MAP2K4|6416|mitogen-activated protein kinase kinase 4##BT019676|MAP2K4|6416|mitogen-activated protein kinase kinase 4##CR536564|MAP2K4|6416|mitogen-activated protein kinase kinase 4##AK092656|ZNF18|7566|zinc finger protein 18##NM_144680|ZNF18|7566|zinc finger protein 18##AY491053|ZNF18|7566|zinc finger protein 18##AK127908|ZNF18|7566|zinc finger protein 18##NM_004662|DNAH9|1770|dynein, axonemal, heavy chain 9##X99947|DNAH9|1770|dynein, axonemal, heavy chain 9##NM_001146312|MYOCD|93649|myocardin##NM_153604|MYOCD|93649|myocardin##AY764180|MYOCD|93649|myocardin##AK128608|MYOCD|93649|myocardin##AK292885|MYOCD|93649|myocardin##BC126307|MYOCD|93649|myocardin##BC143391|MYOCD|93649|myocardin##AF532596|MYOCD|93649|myocardin	0.969191	0.0	
chr18	30819614	30819711	reg1002407.p2	3.875	+	BC021267 AB037805 NM_020805	-466755	-	AL834491 BC121067 BC121068 AK025263 NM_001242409 NM_022751	-769242	-	TSC_hg19_v1_chr18_-_29993196 D28353	-826467	-	BC130535 BC144178 BC144179 NM_001105528	200350	-	BC062719 BC091517 AK126038 NM_198995	200997	-	BX648108 TSC_hg19_v1_chr18_-_31158297	338567	-	BC021267|KLHL14|57565|kelch-like 14 (Drosophila)##AB037805|KLHL14|57565|kelch-like 14 (Drosophila)##NM_020805|KLHL14|57565|kelch-like 14 (Drosophila)##AL834491|FAM59A|64762|family with sequence similarity 59, member A##BC121067|FAM59A|64762|family with sequence similarity 59, member A##BC121068|FAM59A|64762|family with sequence similarity 59, member A##AK025263|FAM59A|64762|family with sequence similarity 59, member A##NM_001242409|FAM59A|64762|family with sequence similarity 59, member A##NM_022751|FAM59A|64762|family with sequence similarity 59, member A##BC130535|C18orf34|374864|chromosome 18 open reading frame 34##BC144178|C18orf34|374864|chromosome 18 open reading frame 34##BC144179|C18orf34|374864|chromosome 18 open reading frame 34##NM_001105528|C18orf34|374864|chromosome 18 open reading frame 34##BC062719|C18orf34|374864|chromosome 18 open reading frame 34##BC091517|C18orf34|374864|chromosome 18 open reading frame 34##AK126038|C18orf34|374864|chromosome 18 open reading frame 34##NM_198995|C18orf34|374864|chromosome 18 open reading frame 34	0.0	0.0	
chr19	12273832	12273918	reg1011128.p2	3.875	+	BC007868 AK096560 AK292455 NM_145233 TSC_hg19_v1_chr19_-_12267555	-6329	-	AL080125 AK023094 BC036714 TSC_hg19_v1_chr19_-_12251166 NM_001203250 NM_021143	-22719	-	AK128700 TSC_hg19_v1_chr19_+_12203111 AK124155	-70762	+	TSC_hg19_v1_chr19_+_12273910 NM_003437 AK291242 BC006421 AK299601 U09367	34	+	AK023304 TSC_hg19_v1_chr19_+_12305836	31958	+	TSC_hg19_v1_chr19_+_12305871 AK093188 AX721123	32031	+	BC007868|ZNF625|90589|zinc finger protein 625##AK096560|ZNF625-ZNF20|100529855|ZNF625-ZNF20 readthrough##AK292455|ZNF625-ZNF20|100529855|ZNF625-ZNF20 readthrough##NM_145233|ZNF625|90589|zinc finger protein 625##AL080125|ZNF20|7568|zinc finger protein 20##AK023094|ZNF20|7568|zinc finger protein 20##BC036714|ZNF20|7568|zinc finger protein 20##NM_001203250|ZNF20|7568|zinc finger protein 20##NM_021143|ZNF20|7568|zinc finger protein 20##AK128700|ZNF788|388507|zinc finger family member 788##NM_003437|ZNF136|7695|zinc finger protein 136##AK291242|ZNF136|7695|zinc finger protein 136##BC006421|ZNF136|7695|zinc finger protein 136##AK299601|ZNF136|7695|zinc finger protein 136##U09367|ZNF136|7695|zinc finger protein 136##AK023304|LOC100289333|100289333|uncharacterized LOC100289333	0.0	0.0	
chr19	5277156	5277262	reg1002639.p2	3.875	+	TSC_hg19_v1_chr19_+_5032899 CU687848	-244310	+	TSC_hg19_v1_chr19_+_4969167 AB020683 BC063889	-308036	+	NM_015015 TSC_hg19_v1_chr19_+_4969124	-308085	+	TSC_hg19_v1_chr19_-_5340824 AB209333 NM_002850 NM_130853 NM_130854 NM_130855	63585	-	AK098722 NM_181710 AK292251 BC017592	178217	+	AB463241 BC014784 D50928 AK300501 BC001216 BC025279 AK296552 TSC_hg19_v1_chr19_-_5622788	345549	-	AB020683|KDM4B|23030|lysine (K)-specific demethylase 4B##BC063889|KDM4B|23030|lysine (K)-specific demethylase 4B##NM_015015|KDM4B|23030|lysine (K)-specific demethylase 4B##AB209333|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_002850|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130853|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130854|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##NM_130855|PTPRS|5802|protein tyrosine phosphatase, receptor type, S##AK098722|ZNRF4|148066|zinc and ring finger 4##NM_181710|ZNRF4|148066|zinc and ring finger 4##AK292251|ZNRF4|148066|zinc and ring finger 4##BC017592|ZNRF4|148066|zinc and ring finger 4##BC014784|SAFB2|9667|scaffold attachment factor B2##D50928|SAFB2|9667|scaffold attachment factor B2##AK300501|SAFB2|9667|scaffold attachment factor B2##BC001216|SAFB2|9667|scaffold attachment factor B2##BC025279|SAFB2|9667|scaffold attachment factor B2##AK296552|SAFB2|9667|scaffold attachment factor B2	0.991417	0.0	denovo_WM_7:37:0.909
chr22	29372810	29372905	reg1014318.p1	3.875	+	AK096397 NM_032173	-59481	+	TSC_hg19_v1_chr22_+_29279579 NM_001206998 AB051436 CR456397	-93080	+	TSC_hg19_v1_chr22_+_29196668 AF086143	-176174	+	TSC_hg19_v1_chr22_+_29449893 BC042614	77068	+	CR456405 BC074758 BC126262 BC126264 AL035364 NM_015370	84992	-	TSC_hg19_v1_chr22_+_29469035 BC063787 NM_001039570 NM_032045 AK056425 AB059618	96165	+	AK096397|ZNRF3|84133|zinc and ring finger 3##NM_032173|ZNRF3|84133|zinc and ring finger 3##NM_001206998|ZNRF3|84133|zinc and ring finger 3##AB051436|ZNRF3|84133|zinc and ring finger 3##CR456397|ZNRF3|84133|zinc and ring finger 3##BC042614|ZNRF3|84133|zinc and ring finger 3##CR456405|C22orf31|25770|chromosome 22 open reading frame 31##BC074758|C22orf31|25770|chromosome 22 open reading frame 31##BC126262|C22orf31|25770|chromosome 22 open reading frame 31##BC126264|C22orf31|25770|chromosome 22 open reading frame 31##AL035364|C22orf31|25770|chromosome 22 open reading frame 31##NM_015370|C22orf31|25770|chromosome 22 open reading frame 31##BC063787|KREMEN1|83999|kringle containing transmembrane protein 1##NM_001039570|KREMEN1|83999|kringle containing transmembrane protein 1##NM_032045|KREMEN1|83999|kringle containing transmembrane protein 1##AK056425|KREMEN1|83999|kringle containing transmembrane protein 1##AB059618|KREMEN1|83999|kringle containing transmembrane protein 1	0.0	0.0	
chr4	57303836	57303932	reg1005014.p1	3.875	+	TSC_hg19_v1_chr4_+_57302451 X53793 BT006988 CU679667 DQ890605 DQ893056 DQ893776 DQ896305 AK308527	-1347	+	TSC_hg19_v1_chr4_+_57302425 D28431	-1466	+	NM_001079524 NM_001079525 TSC_hg19_v1_chr4_+_57302303 CR749824 BC019255	-1579	+	TSC_hg19_v1_chr4_+_57333762 NM_006947 BC017057 BC056901 BC105583	29877	+	TSC_hg19_v1_chr4_+_57333798 BC040134 BX537991 AF038851 BC046143 BC065018 AF069765 BC032609 AK225430 AK307397 AB590681 AF077019	29906	+	AY439003 NM_206919	67490	+	X53793|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BT006988|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ890605|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893056|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ893776|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##DQ896305|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK308527|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##D28431|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079524|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_001079525|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##CR749824|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC019255|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##NM_006947|SRP72|6731|signal recognition particle 72kDa##BC017057|SRP72|6731|signal recognition particle 72kDa##BC056901|SRP72|6731|signal recognition particle 72kDa##BC105583|SRP72|6731|signal recognition particle 72kDa##BC040134|SRP72|6731|signal recognition particle 72kDa##BX537991|SRP72|6731|signal recognition particle 72kDa##AF038851|SRP72|6731|signal recognition particle 72kDa##BC046143|SRP72|6731|signal recognition particle 72kDa##BC065018|SRP72|6731|signal recognition particle 72kDa##AF069765|SRP72|6731|signal recognition particle 72kDa##BC032609|SRP72|6731|signal recognition particle 72kDa##AK225430|SRP72|6731|signal recognition particle 72kDa##AK307397|SRP72|6731|signal recognition particle 72kDa##AF077019|SRP72|6731|signal recognition particle 72kDa##AY439003|ARL9|132946|ADP-ribosylation factor-like 9##NM_206919|ARL9|132946|ADP-ribosylation factor-like 9	0.0	0.0	
chr4	78980599	78980700	reg1014006.p1	3.875	+	NM_001166133 NM_025074 TSC_hg19_v1_chr4_+_78978757 AK096838	-1909	+	NM_020236 AF212225 TSC_hg19_v1_chr4_+_78783990 BC014356 BC017765 AK315600 BC015109 BC032595	-196735	+	TSC_hg19_v1_chr4_-_78740523 AK304397 AK058188 AK303417 NM_144571	-240105	-	BC006366 TSC_hg19_v1_chr4_-_79103287	122636	-	NM_005139 TSC_hg19_v1_chr4_+_79472790	492121	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	492259	+	NM_001166133|FRAS1|80144|Fraser syndrome 1##NM_025074|FRAS1|80144|Fraser syndrome 1##AK096838|FRAS1|80144|Fraser syndrome 1##NM_020236|MRPL1|65008|mitochondrial ribosomal protein L1##AF212225|MRPL1|65008|mitochondrial ribosomal protein L1##BC014356|MRPL1|65008|mitochondrial ribosomal protein L1##BC017765|MRPL1|65008|mitochondrial ribosomal protein L1##AK315600|MRPL1|65008|mitochondrial ribosomal protein L1##BC015109|MRPL1|65008|mitochondrial ribosomal protein L1##BC032595|MRPL1|65008|mitochondrial ribosomal protein L1##AK304397|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK058188|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##AK303417|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_144571|CNOT6L|246175|CCR4-NOT transcription complex, subunit 6-like##NM_005139|ANXA3|306|annexin A3##BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3	0.998391	0.0	denovo_WM_7:20:0.794
chr5	177533125	177533305	reg1016624.p2	3.875	+	TSC_hg19_v1_chr5_+_177482580 AB055766	-50637	+	AF076215 NM_006261	-109973	-	AB018295 NM_173663	-325731	-	TSC_hg19_v1_chr5_+_177540665 BC053323 NM_015111	7413	+	TSC_hg19_v1_chr5_+_177558014 AK093481 AK094065 AX748156 AX748436 AK125337	24796	+	TSC_hg19_v1_chr5_+_177558026 BC009911 DQ494789 NM_022762	24817	+	AB055766|RPL19|6143|ribosomal protein L19##AF076215|PROP1|5626|PROP paired-like homeobox 1##NM_006261|PROP1|5626|PROP paired-like homeobox 1##AB018295|FAM153A|285596|family with sequence similarity 153, member A##NM_173663|FAM153A|285596|family with sequence similarity 153, member A##BC053323|N4BP3|23138|NEDD4 binding protein 3##NM_015111|N4BP3|23138|NEDD4 binding protein 3##AK093481|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK094065|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##AK125337|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##BC009911|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##DQ494789|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)##NM_022762|RMND5B|64777|required for meiotic nuclear division 5 homolog B (S. cerevisiae)	1.871152	0.0	denovo_WM_7:-45:0.386	denovo_WM_7:-46:0.444	denovo_WM_7:-61:0.289	denovo_WM_7:-62:0.677
chr6	135335598	135335694	reg1015682.p1	3.875	+	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-64414	-	TSC_hg19_v1_chr6_+_134758857 AK055166	-576798	+	AK055077 NM_001143676	-696451	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	40242	-	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	40348	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	166802	+	AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK055166|LOC154092|154092|uncharacterized LOC154092##AK055077|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143676|SGK1|6446|serum/glucocorticoid regulated kinase 1##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	0.0	0.0	
chr7	128523742	128523836	reg1015620.p2	3.875	+	NM_001195150	-17326	+	TSC_hg19_v1_chr7_+_128502927 CR456896	-20847	+	NM_001198909 NM_004231 BC107854 TSC_hg19_v1_chr7_+_128502909 BC104230 BC104231 D49400 AK312214	-20899	+	TSC_hg19_v1_chr7_-_128543406 AK095464	19612	-	TSC_hg19_v1_chr7_-_128550763 AK122706 NM_001135914 NM_199349	26977	-	AK293654 AY693665 AY693668 NM_001098629 NM_001098630 NM_001242452 DQ995492 U51127 AK297083 AY504947 AY693666 AY693667 EU258896	54247	+	NM_001195150|LOC100130705|100130705|uncharacterized LOC100130705##CR456896|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##NM_001198909|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##NM_004231|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##BC107854|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##BC104230|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##BC104231|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##D49400|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##AK312214|ATP6V1F|9296|ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F##AK095464|KCP|375616|kielin/chordin-like protein##AK122706|KCP|375616|kielin/chordin-like protein##NM_001135914|KCP|375616|kielin/chordin-like protein##NM_199349|KCP|375616|kielin/chordin-like protein##AK293654|IRF5|3663|interferon regulatory factor 5##AY693665|IRF5|3663|interferon regulatory factor 5##AY693668|IRF5|3663|interferon regulatory factor 5##NM_001098629|IRF5|3663|interferon regulatory factor 5##NM_001098630|IRF5|3663|interferon regulatory factor 5##NM_001242452|IRF5|3663|interferon regulatory factor 5##DQ995492|IRF5|3663|interferon regulatory factor 5##U51127|IRF5|3663|interferon regulatory factor 5##AK297083|IRF5|3663|interferon regulatory factor 5##AY504947|IRF5|3663|interferon regulatory factor 5##AY693666|IRF5|3663|interferon regulatory factor 5##AY693667|IRF5|3663|interferon regulatory factor 5##EU258896|IRF5|3663|interferon regulatory factor 5	0.0	0.999434	CTCF.p2:37:0.999
chr7	69269071	69269195	reg1010246.p2	3.875	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-204545	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-204804	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-205297	+	TSC_hg19_v1_chr7_+_70231164 AK296981	962072	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1328655	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2532645	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.01999	0.0	
chr9	134270619	134270799	reg1008649.p2	3.875	+	TSC_hg19_v1_chr9_+_134269515 BC002872	-1143	+	TSC_hg19_v1_chr9_+_134165108 AK075207 NM_032728 BC006362 AK027568 AK315502 AB385550	-105481	+	BC049388 NM_033387 AK095423	-118790	-	NM_013318 TSC_hg19_v1_chr9_+_134305488	34773	+	CU678266 TSC_hg19_v1_chr9_+_134305548	34831	+	TSC_hg19_v1_chr9_+_134348954 BX647528	78314	+	BC002872|PRRC2B|84726|proline-rich coiled-coil 2B##AK075207|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##NM_032728|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC006362|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK027568|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##AK315502|PPAPDC3|84814|phosphatidic acid phosphatase type 2 domain containing 3##BC049388|FAM78A|286336|family with sequence similarity 78, member A##NM_033387|FAM78A|286336|family with sequence similarity 78, member A##AK095423|FAM78A|286336|family with sequence similarity 78, member A##NM_013318|PRRC2B|84726|proline-rich coiled-coil 2B##BX647528|PRRC2B|84726|proline-rich coiled-coil 2B	0.995497	0.0	denovo_WM_7:-44:0.984
chrX	7859126	7859269	reg1013119.p2	3.875	+	AF167081 NM_013452	-48895	+	NM_000351 M16505 J04964 AK314034	-721696	+	M86934 AK300740 BC012494 TSC_hg19_v1_chrX_-_7066203 AK307088 AK223405 AK300985 AK313155 NM_001135565 NM_001178135 NM_001178136 NM_012080	-793005	-	AK289888 U03886 NM_004650 BC020746	36253	-	AK304586 TSC_hg19_v1_chrX_-_7895766 NM_001142389 NM_001172672	36574	-	AF167079 NM_016378	280110	-	AF167081|VCX|26609|variable charge, X-linked##NM_013452|VCX|26609|variable charge, X-linked##NM_000351|STS|412|steroid sulfatase (microsomal), isozyme S##M16505|STS|412|steroid sulfatase (microsomal), isozyme S##J04964|STS|412|steroid sulfatase (microsomal), isozyme S##AK314034|STS|412|steroid sulfatase (microsomal), isozyme S##M86934|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300740|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##BC012494|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK307088|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK223405|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK300985|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK313155|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001135565|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178135|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_001178136|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##NM_012080|HDHD1|8226|haloacid dehalogenase-like hydrolase domain containing 1##AK289888|PNPLA4|8228|patatin-like phospholipase domain containing 4##U03886|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_004650|PNPLA4|8228|patatin-like phospholipase domain containing 4##BC020746|PNPLA4|8228|patatin-like phospholipase domain containing 4##AK304586|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001142389|PNPLA4|8228|patatin-like phospholipase domain containing 4##NM_001172672|PNPLA4|8228|patatin-like phospholipase domain containing 4##AF167079|VCX2|51480|variable charge, X-linked 2##NM_016378|VCX2|51480|variable charge, X-linked 2	2.976069	0.0	denovo_WM_7:-11:0.969	denovo_WM_7:-26:0.951	denovo_WM_7:-41:0.933
chr11	62120044	62120127	reg1009886.p1	3.874	+	TSC_hg19_v1_chr11_+_62104919 AK313069 AK091894 AX747239 AK297158 AK090908 AX746674 AK309845 BC064963 BC093070 AF411076 BC021295 AK225802	-15137	+	NM_001083926 NM_025080 TSC_hg19_v1_chr11_+_62104878	-15260	+	HQ258026 AY236538 BC130639 BC130645 AY359052 NM_206998	-53576	-	AK312165 NM_003357 BC004481 U01101 DQ893375 DQ896769 X13197 AB590371 CR541780	66451	+	TSC_hg19_v1_chr11_-_62314221 BC012477 BC000926 AK095346	194151	-	TSC_hg19_v1_chr11_-_62314314 AK300376 BC128460 NM_001620 NM_024060	194229	-	AK313069|ASRGL1|80150|asparaginase like 1##AK091894|ASRGL1|80150|asparaginase like 1##AK297158|ASRGL1|80150|asparaginase like 1##AK090908|ASRGL1|80150|asparaginase like 1##AK309845|ASRGL1|80150|asparaginase like 1##BC064963|ASRGL1|80150|asparaginase like 1##BC093070|ASRGL1|80150|asparaginase like 1##AF411076|ASRGL1|80150|asparaginase like 1##BC021295|ASRGL1|80150|asparaginase like 1##AK225802|ASRGL1|80150|asparaginase like 1##NM_001083926|ASRGL1|80150|asparaginase like 1##NM_025080|ASRGL1|80150|asparaginase like 1##HQ258026|SCGB1D4|404552|secretoglobin, family 1D, member 4##AY236538|SCGB1D4|404552|secretoglobin, family 1D, member 4##BC130639|SCGB1D4|404552|secretoglobin, family 1D, member 4##BC130645|SCGB1D4|404552|secretoglobin, family 1D, member 4##AY359052|SCGB1D4|404552|secretoglobin, family 1D, member 4##NM_206998|SCGB1D4|404552|secretoglobin, family 1D, member 4##AK312165|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##NM_003357|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC004481|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##U01101|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ893375|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##DQ896769|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##X13197|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##CR541780|SCGB1A1|7356|secretoglobin, family 1A, member 1 (uteroglobin)##BC012477|AHNAK|79026|AHNAK nucleoprotein##BC000926|AHNAK|79026|AHNAK nucleoprotein##AK095346|AHNAK|79026|AHNAK nucleoprotein##AK300376|AHNAK|79026|AHNAK nucleoprotein##BC128460|AHNAK|79026|AHNAK nucleoprotein##NM_001620|AHNAK|79026|AHNAK nucleoprotein##NM_024060|AHNAK|79026|AHNAK nucleoprotein	0.976256	0.0	denovo_WM_7:-23:0.519	denovo_WM_7:-24:0.457
chr13	113456686	113456769	reg1003139.p1	3.874	+	TSC_hg19_v1_chr13_+_113344493 NM_015205 NM_032189	-112148	+	TSC_hg19_v1_chr13_-_113344130 AK057085	-112621	-	AK129953 NM_207440	-155370	+	TSC_hg19_v1_chr13_+_113622764 AB002360	166058	+	TSC_hg19_v1_chr13_+_113623680 AK315969 NM_001112732 AK295670	166868	+	TSC_hg19_v1_chr13_+_113633625 AK307867	176912	+	NM_015205|ATP11A|23250|ATPase, class VI, type 11A##NM_032189|ATP11A|23250|ATPase, class VI, type 11A##AK057085|LOC440149|440149|uncharacterized LOC440149##AK129953|C13orf35|400165|chromosome 13 open reading frame 35##NM_207440|C13orf35|400165|chromosome 13 open reading frame 35##AB002360|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK315969|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##NM_001112732|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK295670|MCF2L|23263|MCF.2 cell line derived transforming sequence-like##AK307867|MCF2L|23263|MCF.2 cell line derived transforming sequence-like	0.990835	0.0	denovo_WM_7:-57:0.991
chr15	97385116	97385195	reg1014995.p1	3.874	+	TSC_hg19_v1_chr15_+_97326664 AY489187 NM_173499 BC066292 BC033979 BC112390	-58483	+	NM_001145157	-508587	+	AK316086 NM_001145156	-509362	+	TSC_hg19_v1_chr15_+_98503932 AK290221 NM_183376	1118764	+	TSC_hg19_v1_chr15_+_98503952 BC028704 BC070100	1118796	+	AK097062 AK097062 NM_182562	1672455	-	AY489187|SPATA8|145946|spermatogenesis associated 8##NM_173499|SPATA8|145946|spermatogenesis associated 8##BC066292|SPATA8|145946|spermatogenesis associated 8##BC033979|SPATA8|145946|spermatogenesis associated 8##BC112390|SPATA8|145946|spermatogenesis associated 8##NM_001145157|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK290221|ARRDC4|91947|arrestin domain containing 4##NM_183376|ARRDC4|91947|arrestin domain containing 4##BC028704|ARRDC4|91947|arrestin domain containing 4##BC070100|ARRDC4|91947|arrestin domain containing 4##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B	0.0	0.0	
chr16	31885968	31886128	reg1019439.p1	3.874	+	TSC_hg19_v1_chr16_+_31885159 BC036367 BC127088 BC127089 AK292573	-844	+	AF220492 TSC_hg19_v1_chr16_+_31885131	-916	+	TSC_hg19_v1_chr16_+_31885114 AK096390	-932	+	TSC_hg19_v1_chr16_-_32199418 AK300387	313371	-	AB023508 AB023509 BC096700 BC099842 NM_001243722 AK312220 CR541650	378610	+	CR541650 AK312220 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AB023508	801385	-	BC036367|ZNF267|10308|zinc finger protein 267##BC127088|ZNF267|10308|zinc finger protein 267##BC127089|ZNF267|10308|zinc finger protein 267##AK292573|ZNF267|10308|zinc finger protein 267##AF220492|ZNF267|10308|zinc finger protein 267##AK096390|ZNF267|10308|zinc finger protein 267##AK300387|LOC100289574|100289574|hect domain and RLD 2 pseudogene##AB023508|TP53TG3|24150|TP53 target 3##AB023509|TP53TG3|24150|TP53 target 3##BC096700|TP53TG3|24150|TP53 target 3##BC099842|TP53TG3|24150|TP53 target 3##NM_001243722|LOC729264|729264|TP53-target gene 3 protein-like##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AK312220|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AB023508|TP53TG3|24150|TP53 target 3	0.0	0.0	
chr17	75449625	75449729	reg1012012.p1	3.874	+	AK299828 TSC_hg19_v1_chr17_+_75447450	-2288	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	-2895	+	NM_001113496 TSC_hg19_v1_chr17_+_75446637	-3032	+	AK056495 NM_001113495	21647	+	TSC_hg19_v1_chr17_+_75543021 AK096234	93343	+	BC039479 NM_001142640 NM_018996	550605	+	AK299828|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##NM_001113496|SEPT9|10801|septin 9##AK056495|SEPT9|10801|septin 9##NM_001113495|SEPT9|10801|septin 9##AK096234|LOC100507351|100507351|uncharacterized LOC100507351##BC039479|TNRC6C|57690|trinucleotide repeat containing 6C##NM_001142640|TNRC6C|57690|trinucleotide repeat containing 6C##NM_018996|TNRC6C|57690|trinucleotide repeat containing 6C	0.99897	0.0	denovo_WM_7:18:0.314	denovo_WM_7:19:0.314	denovo_WM_7:20:0.314
chr2	20809810	20809930	reg1011400.p2	3.874	+	AK310813 AK312487 AK124398 AK297495 AK309991 BC066954 NM_004040	-163038	+	TSC_hg19_v1_chr2_-_20550436 AK304198 AK093847 AX748335	-259451	-	D87078 AF315591 NM_015317 BC112046 BC112048 BC143550 BC143552	-282737	-	TSC_hg19_v1_chr2_-_20850859 AB527583 CU691206 CU693338 BC057389 BC038847 BC050636 BC027947 AK024311 AK314383 NM_022460	40978	-	AF522369 NM_182828	56553	+	TSC_hg19_v1_chr2_-_21022845 AK025473 NM_021925 AK299244 AK300494 BC017473 AK316162 AK299555 AK301493 AK316204 AK316310	212983	-	AK312487|RHOB|388|ras homolog gene family, member B##AK124398|RHOB|388|ras homolog gene family, member B##BC066954|RHOB|388|ras homolog gene family, member B##NM_004040|RHOB|388|ras homolog gene family, member B##AK304198|PUM2|23369|pumilio homolog 2 (Drosophila)##AK093847|PUM2|23369|pumilio homolog 2 (Drosophila)##D87078|PUM2|23369|pumilio homolog 2 (Drosophila)##AF315591|PUM2|23369|pumilio homolog 2 (Drosophila)##NM_015317|PUM2|23369|pumilio homolog 2 (Drosophila)##BC112046|PUM2|23369|pumilio homolog 2 (Drosophila)##BC112048|PUM2|23369|pumilio homolog 2 (Drosophila)##BC143550|PUM2|23369|pumilio homolog 2 (Drosophila)##BC143552|PUM2|23369|pumilio homolog 2 (Drosophila)##BC057389|HS1BP3|64342|HCLS1 binding protein 3##BC038847|HS1BP3|64342|HCLS1 binding protein 3##BC050636|HS1BP3|64342|HCLS1 binding protein 3##BC027947|HS1BP3|64342|HCLS1 binding protein 3##AK024311|HS1BP3|64342|HCLS1 binding protein 3##AK314383|HS1BP3|64342|HCLS1 binding protein 3##NM_022460|HS1BP3|64342|HCLS1 binding protein 3##AF522369|GDF7|151449|growth differentiation factor 7##NM_182828|GDF7|151449|growth differentiation factor 7##AK025473|C2orf43|60526|chromosome 2 open reading frame 43##NM_021925|C2orf43|60526|chromosome 2 open reading frame 43##AK299244|C2orf43|60526|chromosome 2 open reading frame 43##AK300494|C2orf43|60526|chromosome 2 open reading frame 43##BC017473|C2orf43|60526|chromosome 2 open reading frame 43##AK316162|C2orf43|60526|chromosome 2 open reading frame 43##AK299555|C2orf43|60526|chromosome 2 open reading frame 43##AK301493|C2orf43|60526|chromosome 2 open reading frame 43##AK316204|C2orf43|60526|chromosome 2 open reading frame 43##AK316310|C2orf43|60526|chromosome 2 open reading frame 43	0.130783	0.0	
chr2	70381593	70381690	reg1011323.p2	3.874	+	TSC_hg19_v1_chr2_+_70314983 BC013020	-66643	+	AK130439 TSC_hg19_v1_chr2_+_70314932	-66724	+	TSC_hg19_v1_chr2_+_70314854 Z29505 X78137 AB464656 CU691762	-66814	+	TSC_hg19_v1_chr2_-_70418137 BC002825 BC005079 AK000565 NM_017880	36480	-	CU677529 AB528896 BC015944 M77142 TSC_hg19_v1_chr2_-_70475711 NM_022037 NM_022173 AK303345	94078	-	TSC_hg19_v1_chr2_+_70485278 NM_016297 AF181490 BC051891 AY359063 BC033815 AK314453 AK225302 AK303043 BC022259 AB020715 DQ890801 DQ893956 CU689758	103609	+	AK130439|PCBP1|5093|poly(rC) binding protein 1##Z29505|PCBP1|5093|poly(rC) binding protein 1##X78137|PCBP1|5093|poly(rC) binding protein 1##BC002825|C2orf42|54980|chromosome 2 open reading frame 42##BC005079|C2orf42|54980|chromosome 2 open reading frame 42##AK000565|C2orf42|54980|chromosome 2 open reading frame 42##NM_017880|C2orf42|54980|chromosome 2 open reading frame 42##BC015944|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##M77142|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022037|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_022173|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##AK303345|TIA1|7072|TIA1 cytotoxic granule-associated RNA binding protein##NM_016297|PCYOX1|51449|prenylcysteine oxidase 1##AF181490|PCYOX1|51449|prenylcysteine oxidase 1##BC051891|PCYOX1|51449|prenylcysteine oxidase 1##AY359063|PCYOX1|51449|prenylcysteine oxidase 1##BC033815|PCYOX1|51449|prenylcysteine oxidase 1##AK314453|PCYOX1|51449|prenylcysteine oxidase 1##AK225302|PCYOX1|51449|prenylcysteine oxidase 1##AK303043|PCYOX1|51449|prenylcysteine oxidase 1##BC022259|PCYOX1|51449|prenylcysteine oxidase 1##AB020715|PCYOX1|51449|prenylcysteine oxidase 1##DQ890801|PCYOX1|51449|prenylcysteine oxidase 1##DQ893956|PCYOX1|51449|prenylcysteine oxidase 1	1.993622	0.0	denovo_WM_7:-71:0.607	denovo_WM_7:-72:0.327	denovo_WM_7:-86:0.286	denovo_WM_7:-87:0.567
chr5	73729574	73729733	reg1010635.p1	3.874	+	AK304761 NM_001244364 TSC_hg19_v1_chr5_+_73109359	-620303	+	TSC_hg19_v1_chr5_+_72921990 AK094713 NM_001080479 NM_001177693	-807668	+	AK300525 TSC_hg19_v1_chr5_+_72861597 AL831972 AK074217 AK302021 NM_032175	-868071	+	TSC_hg19_v1_chr5_-_73936554 AF005381 AF059611 BC000418 AF010314 AK295128 AK312608 AK299624	206810	-	AK096578 NM_003633	207595	-	AK130002 NM_000521 TSC_hg19_v1_chr5_+_73981034 AK122992 AF378118 M13519	251355	+	AK304761|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001244364|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK094713|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001080479|RGNEF|64283|190 kDa guanine nucleotide exchange factor##NM_001177693|RGNEF|64283|190 kDa guanine nucleotide exchange factor##AK300525|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AL831972|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK074217|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AK302021|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##NM_032175|UTP15|84135|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)##AF005381|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF059611|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##BC000418|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AF010314|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK295128|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK312608|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK096578|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##NM_003633|ENC1|8507|ectodermal-neural cortex 1 (with BTB-like domain)##AK130002|HEXB|3074|hexosaminidase B (beta polypeptide)##NM_000521|HEXB|3074|hexosaminidase B (beta polypeptide)##AK122992|HEXB|3074|hexosaminidase B (beta polypeptide)##AF378118|HEXB|3074|hexosaminidase B (beta polypeptide)##M13519|HEXB|3074|hexosaminidase B (beta polypeptide)	0.979705	0.0	denovo_WM_7:0:0.325	denovo_WM_7:2:0.326
chr1	111997713	111997893	reg1017427.p1	3.873	+	TSC_hg19_v1_chr1_+_111992132 X60221	-5649	+	BC005960 TSC_hg19_v1_chr1_+_111992113 AY871272 AK313541 AK223018	-5687	+	TSC_hg19_v1_chr1_+_111992097 D28383 BC005366 AK311287	-5709	+	TSC_hg19_v1_chr1_+_112016601 BC017973 NM_174896	18795	+	NM_000677 NM_020683	48939	-	BC041707 BC064411 NM_001081976	108776	-	X60221|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC005960|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AY871272|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK313541|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK223018|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##D28383|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC005366|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC017973|C1orf162|128346|chromosome 1 open reading frame 162##NM_174896|C1orf162|128346|chromosome 1 open reading frame 162##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor	0.336041	0.0	denovo_WM_7:-22:0.336
chr12	25486669	25486849	reg1010256.p1	3.873	+	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	-82818	-	TSC_hg19_v1_chr12_-_25403822 BC013572	-82944	-	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-138553	+	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	219437	-	AK296816 NM_001145727	314728	-	TSC_hg19_v1_chr12_+_26111964 NM_001164748 NM_007211 BC030021 AB093206 AY665468 AY665469 AY665470 AY665471	625242	+	AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1##AK296816|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145727|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001164748|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##NM_007211|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##BC030021|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AB093206|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665468|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665469|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665470|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8##AY665471|RASSF8|11228|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	0.999675	0.0	
chr13	82019958	82020046	reg1015438.p1	3.873	+	TSC_hg19_v1_chr13_-_80915069 AF039843 NM_005842	-1104938	-	BC004205 TSC_hg19_v1_chr13_-_80913114	-1106960	-	AB032991 BC026126 TSC_hg19_v1_chr13_+_80055538 BC021988 AK294839 AB097030 AB097031	-1964447	+	TSC_hg19_v1_chr13_-_84456424 BC051738	2436423	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	2436498	-	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	4353437	-	AF039843|SPRY2|10253|sprouty homolog 2 (Drosophila)##NM_005842|SPRY2|10253|sprouty homolog 2 (Drosophila)##BC004205|SPRY2|10253|sprouty homolog 2 (Drosophila)##AB032991|NDFIP2|54602|Nedd4 family interacting protein 2##BC026126|NDFIP2|54602|Nedd4 family interacting protein 2##BC021988|NDFIP2|54602|Nedd4 family interacting protein 2##AK294839|NDFIP2|54602|Nedd4 family interacting protein 2##AB097030|NDFIP2|54602|Nedd4 family interacting protein 2##AB097031|NDFIP2|54602|Nedd4 family interacting protein 2##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6	0.149896	0.0	
chr22	46100226	46100292	reg1013804.p2	3.873	+	CR456568 TSC_hg19_v1_chr22_+_46067931 AK095309 CR457381 DQ893240 DQ896570	-32342	+	AK025734 TSC_hg19_v1_chr22_+_46067746 AF119662 BC007508	-32503	+	TSC_hg19_v1_chr22_+_46067733 AF086923 AL050282	-32530	+	AF416743 NM_058238 TSC_hg19_v1_chr22_-_46373045	272770	-	TSC_hg19_v1_chr22_+_46449736 BC036832	349465	+	AB528792 AK001807 NM_018280 TSC_hg19_v1_chr22_-_46450052	349753	-	CR456568|ATXN10|25814|ataxin 10##AK095309|ATXN10|25814|ataxin 10##CR457381|ATXN10|25814|ataxin 10##DQ893240|ATXN10|25814|ataxin 10##DQ896570|ATXN10|25814|ataxin 10##AK025734|ATXN10|25814|ataxin 10##AF119662|ATXN10|25814|ataxin 10##BC007508|ATXN10|25814|ataxin 10##AF086923|ATXN10|25814|ataxin 10##AL050282|ATXN10|25814|ataxin 10##AF416743|WNT7B|7477|wingless-type MMTV integration site family, member 7B##NM_058238|WNT7B|7477|wingless-type MMTV integration site family, member 7B##AK001807|C22orf26|55267|chromosome 22 open reading frame 26##NM_018280|C22orf26|55267|chromosome 22 open reading frame 26	0.996987	0.0	denovo_WM_7:-60:0.633	denovo_WM_7:-61:0.364
chr2	9747801	9747867	reg1011623.p1	3.873	+	TSC_hg19_v1_chr2_-_9695885 U86755 U92649 BC062687 GQ402545 NM_003183 BC146658	-51915	-	TSC_hg19_v1_chr2_-_9695883 AK289829	-51951	-	TSC_hg19_v1_chr2_-_9695874 U69611 U69612	-51984	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	22779	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	23215	-	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	23291	-	U86755|ADAM17|6868|ADAM metallopeptidase domain 17##U92649|ADAM17|6868|ADAM metallopeptidase domain 17##BC062687|ADAM17|6868|ADAM metallopeptidase domain 17##GQ402545|ADAM17|6868|ADAM metallopeptidase domain 17##NM_003183|ADAM17|6868|ADAM metallopeptidase domain 17##BC146658|ADAM17|6868|ADAM metallopeptidase domain 17##AK289829|ADAM17|6868|ADAM metallopeptidase domain 17##U69611|ADAM17|6868|ADAM metallopeptidase domain 17##U69612|ADAM17|6868|ADAM metallopeptidase domain 17##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	0.990736	0.0	denovo_WM_7:14:0.237	denovo_WM_7:15:0.237	denovo_WM_7:16:0.237	denovo_WM_7:17:0.237
chr3	191009154	191009257	reg1009293.p2	3.873	+	AY398681 AY573933 BC128106 BC128107 NM_198184	-78884	+	NM_001146686	-428741	-	NM_001167928 NM_001167929 NM_001167930 NM_001167931 NM_002182 NM_134470 AK291669 TSC_hg19_v1_chr3_+_190231874 BC053621 AB006537 AF538730 AF538731 AF538732 AF538733 AF538734 EF591790 BC016141	-777328	+	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	37961	+	AK090630 AX746546 NM_198152	39119	-	AY858112 NM_001083308	169746	+	AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##NM_001146686|GMNC|647309|geminin coiled-coil domain containing##NM_001167928|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167929|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167930|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_001167931|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_002182|IL1RAP|3556|interleukin 1 receptor accessory protein##NM_134470|IL1RAP|3556|interleukin 1 receptor accessory protein##AK291669|IL1RAP|3556|interleukin 1 receptor accessory protein##BC053621|IL1RAP|3556|interleukin 1 receptor accessory protein##AB006537|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538730|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538731|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538732|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538733|IL1RAP|3556|interleukin 1 receptor accessory protein##AF538734|IL1RAP|3556|interleukin 1 receptor accessory protein##EF591790|IL1RAP|3556|interleukin 1 receptor accessory protein##BC016141|IL1RAP|3556|interleukin 1 receptor accessory protein##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2	0.647743	0.0	denovo_WM_7:47:0.592
chr7	156566775	156566885	reg1012460.p1	3.873	+	TSC_hg19_v1_chr7_-_156468370 CU688401	-98408	-	NM_001184997 AF325690	-131135	+	NM_030936 TSC_hg19_v1_chr7_+_156433487 AK314067 NM_001184996 AL136874 BC028120 AK307316	-133365	+	TSC_hg19_v1_chr7_-_156685868 AL834394 AB463099 AM392621 AM393143 AM393254 AM393828 CU676016 AF402318 BC017663 BC063649 AF107454 AK021727 AK291037 AK299753	118917	-	TSC_hg19_v1_chr7_-_156685878 NM_022458	119086	-	TSC_hg19_v1_chr7_+_156742419 AY576779 NM_138400	175585	+	NM_001184997|RNF32|140545|ring finger protein 32##AF325690|RNF32|140545|ring finger protein 32##NM_030936|RNF32|140545|ring finger protein 32##AK314067|RNF32|140545|ring finger protein 32##NM_001184996|RNF32|140545|ring finger protein 32##AL136874|RNF32|140545|ring finger protein 32##BC028120|RNF32|140545|ring finger protein 32##AK307316|RNF32|140545|ring finger protein 32##AL834394|LMBR1|64327|limb region 1 homolog (mouse)##AM392621|LMBR1|64327|limb region 1 homolog (mouse)##AM393143|LMBR1|64327|limb region 1 homolog (mouse)##AM393254|LMBR1|64327|limb region 1 homolog (mouse)##AM393828|LMBR1|64327|limb region 1 homolog (mouse)##AF402318|LMBR1|64327|limb region 1 homolog (mouse)##BC017663|LMBR1|64327|limb region 1 homolog (mouse)##BC063649|LMBR1|64327|limb region 1 homolog (mouse)##AK021727|LMBR1|64327|limb region 1 homolog (mouse)##AK291037|LMBR1|64327|limb region 1 homolog (mouse)##AK299753|LMBR1|64327|limb region 1 homolog (mouse)##NM_022458|LMBR1|64327|limb region 1 homolog (mouse)##AY576779|NOM1|64434|nucleolar protein with MIF4G domain 1##NM_138400|NOM1|64434|nucleolar protein with MIF4G domain 1	0.059244	0.0	
chr7	44769341	44769428	reg1017891.p2	3.873	+	TSC_hg19_v1_chr7_+_44646225 D10523 BC004964 BC014617	-123156	+	TSC_hg19_v1_chr7_+_44646197 AK314179	-123187	+	AK304439 TSC_hg19_v1_chr7_+_44646190	-123192	+	TSC_hg19_v1_chr7_+_44788175 BC110435	18798	+	TSC_hg19_v1_chr7_+_44788465 AK090415 NM_031449	19107	+	NM_174929 BC131780 BC016968 AY426594 AF357908	26433	+	D10523|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC004964|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC014617|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK314179|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##AK304439|OGDH|4967|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)##BC110435|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AK090415|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_031449|ZMIZ2|83637|zinc finger, MIZ-type containing 2##NM_174929|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC131780|ZMIZ2|83637|zinc finger, MIZ-type containing 2##BC016968|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AY426594|ZMIZ2|83637|zinc finger, MIZ-type containing 2##AF357908|ZMIZ2|83637|zinc finger, MIZ-type containing 2	0.971826	0.0	denovo_WM_7:-66:0.649
chr9	110636536	110636716	reg1001076.p1	3.873	+	TSC_hg19_v1_chr9_-_110252048 NM_004235	-384580	-	AF105036 AF022184 TSC_hg19_v1_chr9_-_110251847 U70663	-384786	-	HM026463 CU688792 CU689020 DQ891793 DQ894975 AB385001 TSC_hg19_v1_chr9_-_110251402 BC030811 BC029923 AK313489	-385178	-	CU689742 TSC_hg19_v1_chr9_-_111618267 BC033789 AK313871 NM_006686	981615	-	BC014610 AK314981 NM_006687	987947	+	BC033094 TSC_hg19_v1_chr9_-_111696232 CR749385 AK304742	1059615	-	NM_004235|KLF4|9314|Kruppel-like factor 4 (gut)##AF105036|KLF4|9314|Kruppel-like factor 4 (gut)##AF022184|KLF4|9314|Kruppel-like factor 4 (gut)##U70663|KLF4|9314|Kruppel-like factor 4 (gut)##HM026463|KLF4|9314|Kruppel-like factor 4 (gut)##DQ891793|KLF4|9314|Kruppel-like factor 4 (gut)##DQ894975|KLF4|9314|Kruppel-like factor 4 (gut)##BC030811|KLF4|9314|Kruppel-like factor 4 (gut)##BC029923|KLF4|9314|Kruppel-like factor 4 (gut)##AK313489|KLF4|9314|Kruppel-like factor 4 (gut)##BC033789|ACTL7B|10880|actin-like 7B##AK313871|ACTL7B|10880|actin-like 7B##NM_006686|ACTL7B|10880|actin-like 7B##BC014610|ACTL7A|10881|actin-like 7A##AK314981|ACTL7A|10881|actin-like 7A##NM_006687|ACTL7A|10881|actin-like 7A##BC033094|IKBKAP|8518|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein##CR749385|IKBKAP|8518|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein##AK304742|IKBKAP|8518|inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	0.0	0.0	
chr10	12408040	12408188	reg1011721.p1	3.872	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	-16337	+	TSC_hg19_v1_chr10_+_12391709 BC035745	-16397	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	-16539	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	635585	-	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	734031	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	795454	+	AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10	0.0	0.0	
chr10	8102711	8102831	reg1012593.p2	3.872	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-5288	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-5996	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-6122	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	2944486	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	2944514	+	AK299548 TSC_hg19_v1_chr10_+_11047339	2944569	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	0.0	0.0	
chr1	111716814	111716979	reg1014660.p1	3.872	+	AF068302 TSC_hg19_v1_chr1_+_111682893 BC032610	-33999	+	NM_006090 TSC_hg19_v1_chr1_+_111682844 AK023381	-34042	+	TSC_hg19_v1_chr1_-_111682782 NM_178454	-34094	-	TSC_hg19_v1_chr1_+_111742947 AK057181	26052	+	CU678770 TSC_hg19_v1_chr1_-_111743188	26240	-	TSC_hg19_v1_chr1_-_111743272 BC004557 NM_024901	26374	-	AF068302|CEPT1|10390|choline/ethanolamine phosphotransferase 1##BC032610|CEPT1|10390|choline/ethanolamine phosphotransferase 1##NM_006090|CEPT1|10390|choline/ethanolamine phosphotransferase 1##AK023381|CEPT1|10390|choline/ethanolamine phosphotransferase 1##NM_178454|DRAM2|128338|DNA-damage regulated autophagy modulator 2##BC004557|DENND2D|79961|DENN/MADD domain containing 2D##NM_024901|DENND2D|79961|DENN/MADD domain containing 2D	0.142639	0.0	
chr17	76553740	76553853	reg1014270.p2	3.872	+	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	-179066	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	-197639	-	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-326333	+	NM_173628	19679	-	AK316277 TSC_hg19_v1_chr17_-_76719649	165851	-	TSC_hg19_v1_chr17_-_76719676 AK293894	165955	-	AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17##AK316277|CYTH1|9267|cytohesin 1##AK293894|CYTH1|9267|cytohesin 1	1.323976	0.0	denovo_WM_7:-57:0.227	denovo_WM_7:-72:0.218
chr18	24660854	24660954	reg1018064.p2	3.872	+	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	-215188	-	U63623 NM_004028	-218350	-	AF542549 NM_198991	-440597	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	61975	-	AF239821 BC025764 TSC_hg19_v1_chr18_-_24765254 AY358488 NM_031422	104329	-	TSC_hg19_v1_chr18_-_25757095 AB384981 EU832318 EU832403 X54315 BC036470	1096133	-	AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##U63623|AQP4|361|aquaporin 4##NM_004028|AQP4|361|aquaporin 4##AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AF239821|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##BC025764|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AY358488|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_031422|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##EU832318|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832403|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X54315|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##BC036470|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)	0.0	0.0	
chr19	52430116	52430256	reg1015575.p1	3.872	+	AK000909 AL713677 AK225480 BC005368 AK315487 NM_023074	-21914	-	BC035367 BC030610 TSC_hg19_v1_chr19_-_52391198 AK291812 AL832871 NM_001135590 BC004992 AK093036 AK289479 AX747873 NM_032679	-39025	-	AK123030 AK292541 NM_002030 BC059388	-131774	+	TSC_hg19_v1_chr19_+_52430722 AK027565 NM_001031721 NM_024840 BC057776	519	+	TSC_hg19_v1_chr19_-_52490083 AK021864 AF309561 AK023467 NM_021632	59890	-	BC112961 BX647556 AK128361 AK291734 AK131494 CR936612 BC053884 AK294977 NM_001199324 NM_198480	81269	-	AK000909|ZNF649|65251|zinc finger protein 649##AL713677|ZNF649|65251|zinc finger protein 649##AK225480|ZNF649|65251|zinc finger protein 649##BC005368|ZNF649|65251|zinc finger protein 649##AK315487|ZNF649|65251|zinc finger protein 649##NM_023074|ZNF649|65251|zinc finger protein 649##BC035367|ZNF577|84765|zinc finger protein 577##BC030610|ZNF577|84765|zinc finger protein 577##AK291812|ZNF577|84765|zinc finger protein 577##AL832871|ZNF577|84765|zinc finger protein 577##NM_001135590|ZNF577|84765|zinc finger protein 577##BC004992|ZNF577|84765|zinc finger protein 577##AK093036|ZNF577|84765|zinc finger protein 577##AK289479|ZNF577|84765|zinc finger protein 577##NM_032679|ZNF577|84765|zinc finger protein 577##AK123030|FPR3|2359|formyl peptide receptor 3##AK292541|FPR3|2359|formyl peptide receptor 3##NM_002030|FPR3|2359|formyl peptide receptor 3##BC059388|FPR3|2359|formyl peptide receptor 3##AK027565|ZNF613|79898|zinc finger protein 613##NM_001031721|ZNF613|79898|zinc finger protein 613##NM_024840|ZNF613|79898|zinc finger protein 613##BC057776|ZNF613|79898|zinc finger protein 613##AK021864|ZNF350|59348|zinc finger protein 350##AF309561|ZNF350|59348|zinc finger protein 350##AK023467|ZNF350|59348|zinc finger protein 350##NM_021632|ZNF350|59348|zinc finger protein 350##BC112961|ZNF615|284370|zinc finger protein 615##BX647556|ZNF615|284370|zinc finger protein 615##AK128361|ZNF615|284370|zinc finger protein 615##AK291734|ZNF615|284370|zinc finger protein 615##AK131494|ZNF615|284370|zinc finger protein 615##CR936612|ZNF615|284370|zinc finger protein 615##BC053884|ZNF615|284370|zinc finger protein 615##AK294977|ZNF615|284370|zinc finger protein 615##NM_001199324|ZNF615|284370|zinc finger protein 615##NM_198480|ZNF615|284370|zinc finger protein 615	0.0	0.0	
chr20	42550238	42550333	reg1016251.p1	3.872	+	NM_001098796 NM_032883 TSC_hg19_v1_chr20_+_42544789 AK289906 BC007636	-5492	+	TSC_hg19_v1_chr20_+_42543491 NM_001098797 AB591023	-6798	+	BC040049 AK058060 NM_001008901 NM_176791	-194682	-	NM_001098798	24250	+	AL132999 TSC_hg19_v1_chr20_-_42815818 AK304863	265508	-	BC029957 NM_020433 NM_175913	265932	-	NM_001098796|TOX2|84969|TOX high mobility group box family member 2##NM_032883|TOX2|84969|TOX high mobility group box family member 2##AK289906|TOX2|84969|TOX high mobility group box family member 2##BC007636|TOX2|84969|TOX high mobility group box family member 2##NM_001098797|TOX2|84969|TOX high mobility group box family member 2##BC040049|GTSF1L|149699|gametocyte specific factor 1-like##AK058060|GTSF1L|149699|gametocyte specific factor 1-like##NM_001008901|GTSF1L|149699|gametocyte specific factor 1-like##NM_176791|GTSF1L|149699|gametocyte specific factor 1-like##NM_001098798|TOX2|84969|TOX high mobility group box family member 2##AL132999|JPH2|57158|junctophilin 2##AK304863|JPH2|57158|junctophilin 2##BC029957|JPH2|57158|junctophilin 2##NM_020433|JPH2|57158|junctophilin 2##NM_175913|JPH2|57158|junctophilin 2	0.994055	0.0	denovo_WM_7:19:0.359	denovo_WM_7:23:0.411
chr20	46250021	46250135	reg1012609.p2	3.872	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-119394	+	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	-119456	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-264590	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	164674	-	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	165240	-	AB037836 TSC_hg19_v1_chr20_-_47444291	1194208	-	AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1.855854	0.991729	CTCF.p2:31:0.992	denovo_WM_7:-64:0.317	denovo_WM_7:-67:0.491	denovo_WM_7:-83:0.435	denovo_WM_7:-84:0.435
chr2	135809715	135809895	reg1009954.p2	3.872	+	BC137276 BC137277 BC144555 AY574901 AY574902 AY574903 AY574904 AY574905 NM_001018046 NM_025052	-27559	-	TSC_hg19_v1_chr2_+_135676409 AF048732	-133386	+	TSC_hg19_v1_chr2_+_135676397 AK294889 NM_001241 NM_058241 AF048731 AK292913 BC114366	-133408	+	NM_001172435 NM_012233 TSC_hg19_v1_chr2_+_135809861 AK022494 BC146809 BC071602 D31886 AB385272 AB449877 BC030992	111	+	AK095362 BC089429 NM_032143	478981	-	TSC_hg19_v1_chr2_+_136289050 BC001217 D21852 BC041093 NM_015361	479255	+	BC137276|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC137277|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC144555|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574901|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574902|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574903|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574904|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574905|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_001018046|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_025052|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AF048732|CCNT2|905|cyclin T2##AK294889|CCNT2|905|cyclin T2##NM_001241|CCNT2|905|cyclin T2##NM_058241|CCNT2|905|cyclin T2##AF048731|CCNT2|905|cyclin T2##AK292913|CCNT2|905|cyclin T2##BC114366|CCNT2|905|cyclin T2##NM_001172435|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##NM_012233|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK022494|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC146809|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC071602|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##D31886|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AB449877|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC030992|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK095362|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC089429|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_032143|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC001217|R3HDM1|23518|R3H domain containing 1##D21852|R3HDM1|23518|R3H domain containing 1##BC041093|R3HDM1|23518|R3H domain containing 1##NM_015361|R3HDM1|23518|R3H domain containing 1	0.0	0.582893	CTCF.p2:-91:0.571
chr4	57684047	57684138	reg1013932.p1	3.872	+	AF492675 NM_001145460 NM_032495 NM_139212	-136234	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	-161514	-	AB019573 AB463756 AM393649 DQ892193 EU176669 TSC_hg19_v1_chr4_-_57522247	-161935	-	CR542135 DQ895533 EU176199 TSC_hg19_v1_chr4_-_57687883 AK312222 NM_021114 X57655 BC022514 GU727622	3773	-	TSC_hg19_v1_chr4_+_57774035 NM_005612	89963	+	TSC_hg19_v1_chr4_+_57774090 BC038985 U13879 U22680	90071	+	AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##AB019573|HOPX|84525|HOP homeobox##AM393649|HOPX|84525|HOP homeobox##DQ892193|HOPX|84525|HOP homeobox##EU176669|HOPX|84525|HOP homeobox##CR542135|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##DQ895533|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##EU176199|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AK312222|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_021114|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##X57655|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##BC022514|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##GU727622|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_005612|REST|5978|RE1-silencing transcription factor##BC038985|REST|5978|RE1-silencing transcription factor##U13879|REST|5978|RE1-silencing transcription factor	0.99834	0.0	denovo_WM_7:-63:0.457	denovo_WM_7:-64:0.457
chr5	102093867	102093942	reg1014172.p2	3.872	+	CU690004 DQ893559 DQ894042 AK131445 AY273897 AF505657 BC034976 NM_173488	-259271	-	AF401643 AB527220 AK128854 TSC_hg19_v1_chr5_-_101631989 BX647349 AY273896 NM_180991	-461796	-	L41680 BC027866 TSC_hg19_v1_chr5_-_100238968 AK292872 BC053657 NM_175052 NM_005668	-1854976	-	BC018127 NM_000919 NM_001177306 NM_138766 NM_138821 NM_138822 TSC_hg19_v1_chr5_+_102201531	107626	+	M37721 TSC_hg19_v1_chr5_+_102201730 AK296521 AK290158 S75037 S75038 AB527419 AB095007 BT007419	107902	+	BC151135 BC157835 BC015325 CR627424 AK295796 AK225572 AK000132 NM_017676 TSC_hg19_v1_chr5_-_102455843	361909	-	DQ893559|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##DQ894042|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AK131445|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AY273897|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF505657|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##BC034976|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##NM_173488|SLCO6A1|133482|solute carrier organic anion transporter family, member 6A1##AF401643|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AK128854|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##BX647349|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##AY273896|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##NM_180991|SLCO4C1|353189|solute carrier organic anion transporter family, member 4C1##L41680|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC027866|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##AK292872|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC053657|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_175052|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##NM_005668|ST8SIA4|7903|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4##BC018127|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_000919|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_001177306|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138766|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138821|PAM|5066|peptidylglycine alpha-amidating monooxygenase##NM_138822|PAM|5066|peptidylglycine alpha-amidating monooxygenase##M37721|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK296521|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AK290158|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75037|PAM|5066|peptidylglycine alpha-amidating monooxygenase##S75038|PAM|5066|peptidylglycine alpha-amidating monooxygenase##AB095007|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BT007419|PAM|5066|peptidylglycine alpha-amidating monooxygenase##BC151135|GIN1|54826|gypsy retrotransposon integrase 1##BC157835|GIN1|54826|gypsy retrotransposon integrase 1##BC015325|GIN1|54826|gypsy retrotransposon integrase 1##CR627424|GIN1|54826|gypsy retrotransposon integrase 1##AK295796|GIN1|54826|gypsy retrotransposon integrase 1##AK225572|GIN1|54826|gypsy retrotransposon integrase 1##AK000132|GIN1|54826|gypsy retrotransposon integrase 1##NM_017676|GIN1|54826|gypsy retrotransposon integrase 1	0.987576	0.0	
chr7	148723939	148724058	reg1009432.p2	3.872	+	TSC_hg19_v1_chr7_-_148581422 AK303637 NM_001203247 NM_001203248 NM_004456 NM_152998	-142572	-	TSC_hg19_v1_chr7_-_148581380 AK314291	-142617	-	TSC_hg19_v1_chr7_-_148581377 AK293239 AK303585	-142621	-	CU674214 DQ893573 DQ894347 TSC_hg19_v1_chr7_-_148725561 BC000425 BC001928 J05016 AK290971	1557	-	BC006344 BC011754 AK313299 TSC_hg19_v1_chr7_-_148725753	1745	-	TSC_hg19_v1_chr7_-_148725766 NM_004911	1774	-	AK303637|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203247|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_001203248|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_004456|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##NM_152998|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK314291|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK293239|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##AK303585|EZH2|2146|enhancer of zeste homolog 2 (Drosophila)##DQ893573|PDIA4|9601|protein disulfide isomerase family A, member 4##DQ894347|PDIA4|9601|protein disulfide isomerase family A, member 4##BC000425|PDIA4|9601|protein disulfide isomerase family A, member 4##BC001928|PDIA4|9601|protein disulfide isomerase family A, member 4##AK290971|PDIA4|9601|protein disulfide isomerase family A, member 4##BC006344|PDIA4|9601|protein disulfide isomerase family A, member 4##BC011754|PDIA4|9601|protein disulfide isomerase family A, member 4##AK313299|PDIA4|9601|protein disulfide isomerase family A, member 4##NM_004911|PDIA4|9601|protein disulfide isomerase family A, member 4	0.99422	0.0	
chr8	126346636	126346744	reg1010989.p1	3.872	+	NM_173685 TSC_hg19_v1_chr8_+_126104111 BC032797 AK057002	-242593	+	TSC_hg19_v1_chr8_-_126104047 NM_014846	-242633	-	TSC_hg19_v1_chr8_-_126104024 AK296970	-242668	-	TSC_hg19_v1_chr8_+_126442581 BC063292 NM_025195	95889	+	TSC_hg19_v1_chr8_-_126963395 BX648371	616723	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	1223865	-	NM_173685|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##BC032797|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##AK057002|NSMCE2|286053|non-SMC element 2, MMS21 homolog (S. cerevisiae)##NM_014846|KIAA0196|9897|KIAA0196##AK296970|KIAA0196|9897|KIAA0196##BC063292|TRIB1|10221|tribbles homolog 1 (Drosophila)##NM_025195|TRIB1|10221|tribbles homolog 1 (Drosophila)##BX648371|LOC100130231|100130231|uncharacterized LOC100130231##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B	0.0	0.0	
chr9	5672187	5672278	reg1016811.p1	3.872	+	BC036853 TSC_hg19_v1_chr9_-_5630098	-42142	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	-43105	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-161569	+	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	160719	-	TSC_hg19_v1_chr9_-_5833067 AK127218	160835	-	TSC_hg19_v1_chr9_-_5833082 NM_024896	160846	-	BC036853|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AK127218|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##NM_024896|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.0	0.0	
chrX	11756740	11756856	reg1013841.p2	3.872	+	AF012272 AF022212 AF117067 NM_006125 NM_013427	-72978	-	AF436849 BC069118 M86932 NM_001142 NM_182680 NM_182681 BC074951	-445256	+	AF177663 NM_013423 AK297713	-472690	-	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	19545	+	NM_001193270 AK300814	19919	+	NM_006800 AK025642	20949	+	AF012272|ARHGAP6|395|Rho GTPase activating protein 6##AF022212|ARHGAP6|395|Rho GTPase activating protein 6##AF117067|ARHGAP6|395|Rho GTPase activating protein 6##NM_006125|ARHGAP6|395|Rho GTPase activating protein 6##NM_013427|ARHGAP6|395|Rho GTPase activating protein 6##AF436849|AMELX|265|amelogenin, X-linked##BC069118|AMELX|265|amelogenin, X-linked##M86932|AMELX|265|amelogenin, X-linked##NM_001142|AMELX|265|amelogenin, X-linked##NM_182680|AMELX|265|amelogenin, X-linked##NM_182681|AMELX|265|amelogenin, X-linked##BC074951|AMELX|265|amelogenin, X-linked##AF177663|ARHGAP6|395|Rho GTPase activating protein 6##NM_013423|ARHGAP6|395|Rho GTPase activating protein 6##AK297713|ARHGAP6|395|Rho GTPase activating protein 6##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)	1.877941	0.0	denovo_WM_7:35:0.205	denovo_WM_7:36:0.551	denovo_WM_7:51:0.547
chr10	63842688	63842868	reg1001627.p1	3.871	+	TSC_hg19_v1_chr10_+_63809115 BC015120 NM_001244638 BC066345 AK024803	-33682	+	TSC_hg19_v1_chr10_+_63661457 AK296921 BC107800 BC056680 AB527389	-181347	+	NM_032199	-181766	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	185761	-	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	291265	+	AJ505150 NM_199452	437428	+	BC015120|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_001244638|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC066345|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK024803|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AK296921|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC107800|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##BC056680|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##NM_032199|ARID5B|84159|AT rich interactive domain 5B (MRF1-like)##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365	0.0	0.0	
chr17	6502890	6503023	reg1013778.p2	3.871	+	TSC_hg19_v1_chr17_-_6459873 BC035799 BC128583 BC128584 AF334586 NM_001165966 NM_031220	-43126	-	TSC_hg19_v1_chr17_+_6347774 NM_001195228 NM_019013 BC005004 AK225613 AK001353 AK225702 BC013966 AK001018	-155193	+	DQ892260 DQ895462 AB593054 BC007994 BC012055 AF038437 AB593047 AB593042 AB593043 AB593050 AB593052 AK314558 AB593051 AK023970 AB593048 BX537907 AB593044 AB593045 AB593046 AB593049 AJ633677 AJ633678 AJ830742 AJ830743 AB593053 AB593055 BX647279 AF525970 NM_001033054 NM_001033055 NM_014336 DQ426860	-164453	-	TSC_hg19_v1_chr17_-_6543982 AB018296 BC017566 AK292876	41042	-	TSC_hg19_v1_chr17_-_6544032 AK296971	41074	-	NM_014804	41290	-	BC035799|PITPNM3|83394|PITPNM family member 3##BC128583|PITPNM3|83394|PITPNM family member 3##BC128584|PITPNM3|83394|PITPNM family member 3##AF334586|PITPNM3|83394|PITPNM family member 3##NM_001165966|PITPNM3|83394|PITPNM family member 3##NM_031220|PITPNM3|83394|PITPNM family member 3##NM_001195228|FAM64A|54478|family with sequence similarity 64, member A##NM_019013|FAM64A|54478|family with sequence similarity 64, member A##BC005004|FAM64A|54478|family with sequence similarity 64, member A##AK225613|FAM64A|54478|family with sequence similarity 64, member A##AK001353|FAM64A|54478|family with sequence similarity 64, member A##AK225702|FAM64A|54478|family with sequence similarity 64, member A##BC013966|FAM64A|54478|family with sequence similarity 64, member A##AK001018|FAM64A|54478|family with sequence similarity 64, member A##DQ892260|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##DQ895462|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593054|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BC007994|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BC012055|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AF038437|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593047|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593042|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593043|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593050|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593052|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AK314558|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593051|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AK023970|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593048|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BX537907|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593044|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593045|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593046|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593049|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ633677|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ633678|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ830742|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AJ830743|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593053|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB593055|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##BX647279|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AF525970|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_001033054|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_001033055|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##NM_014336|AIPL1|23746|aryl hydrocarbon receptor interacting protein-like 1##AB018296|KIAA0753|9851|KIAA0753##BC017566|KIAA0753|9851|KIAA0753##AK292876|KIAA0753|9851|KIAA0753##AK296971|KIAA0753|9851|KIAA0753##NM_014804|KIAA0753|9851|KIAA0753	0.998057	0.0	denovo_WM_7:1:0.246	denovo_WM_7:2:0.248	denovo_WM_7:3:0.307
chr19	6515962	6516103	reg1012843.p1	3.871	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-13715	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-34249	-	NM_139161 NM_174881 AK292956 AF503290 AY358684 BC018409 AK000653	-51748	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	14994	+	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	75000	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	75074	-	EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##NM_139161|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_174881|CRB3|92359|crumbs homolog 3 (Drosophila)##AK292956|CRB3|92359|crumbs homolog 3 (Drosophila)##AF503290|CRB3|92359|crumbs homolog 3 (Drosophila)##AY358684|CRB3|92359|crumbs homolog 3 (Drosophila)##BC018409|CRB3|92359|crumbs homolog 3 (Drosophila)##AK000653|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule	0.999622	0.0	
chr4	101659555	101659687	reg1016665.p2	3.871	+	CU676062 AB590686 AB034695 AK222741 AK304568 AK291831 BC017781 AF205940 AK026875 AK313504 NM_001159694 NM_016242	-220461	-	AL832277 BC013592 TSC_hg19_v1_chr4_-_101111626 AK312926 AK094236 NM_145244	-547991	-	TSC_hg19_v1_chr4_+_100871641 AK123926	-787975	+	AB385587 AB451338 AB451487 AM393486 AM393713 CU693026 AY904364 BC025714 TSC_hg19_v1_chr4_-_102268080 L14778	608405	-	TSC_hg19_v1_chr4_-_102268343 AL353950	608751	-	AK290532 TSC_hg19_v1_chr4_-_102268547	608894	-	AB034695|EMCN|51705|endomucin##AK222741|EMCN|51705|endomucin##AK304568|EMCN|51705|endomucin##AK291831|EMCN|51705|endomucin##BC017781|EMCN|51705|endomucin##AF205940|EMCN|51705|endomucin##AK026875|EMCN|51705|endomucin##AK313504|EMCN|51705|endomucin##NM_001159694|EMCN|51705|endomucin##NM_016242|EMCN|51705|endomucin##AL832277|DDIT4L|115265|DNA-damage-inducible transcript 4-like##BC013592|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK312926|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK094236|DDIT4L|115265|DNA-damage-inducible transcript 4-like##NM_145244|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK123926|LOC256880|256880|uncharacterized LOC256880##AB451338|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AB451487|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393486|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393713|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AY904364|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##BC025714|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##L14778|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AL353950|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AK290532|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme	0.998396	0.0	
chr6	74679871	74679978	reg1012051.p1	3.871	+	TSC_hg19_v1_chr6_+_74406033 AY149920	-273900	+	EF553520 TSC_hg19_v1_chr6_+_74405925 AY788891 BX641095	-274004	+	TSC_hg19_v1_chr6_+_74405882 AK095888	-274053	+	BC146868 U73778 NM_004370 NM_080645 TSC_hg19_v1_chr6_-_75915745	1235731	-	TSC_hg19_v1_chr6_-_75915768 AK307558	1235856	-	CR407646 CR542125 X15822 TSC_hg19_v1_chr6_-_75953494 BC101826 BC101828 AK312154	1273555	-	AY149920|CD109|135228|CD109 molecule##EF553520|CD109|135228|CD109 molecule##AY788891|CD109|135228|CD109 molecule##BX641095|CD109|135228|CD109 molecule##AK095888|CD109|135228|CD109 molecule##BC146868|COL12A1|1303|collagen, type XII, alpha 1##U73778|COL12A1|1303|collagen, type XII, alpha 1##NM_004370|COL12A1|1303|collagen, type XII, alpha 1##NM_080645|COL12A1|1303|collagen, type XII, alpha 1##AK307558|COL12A1|1303|collagen, type XII, alpha 1##CR407646|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##CR542125|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##X15822|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##BC101826|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##BC101828|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)##AK312154|COX7A2|1347|cytochrome c oxidase subunit VIIa polypeptide 2 (liver)	0.991591	0.913116	denovo_WM_7:22:0.705	CTCF.p2:-32:0.913
chr11	3915628	3915730	reg1004977.p3	3.870	+	TSC_hg19_v1_chr11_+_3876919 NM_003156 U52426 HQ317451 BC021300	-38750	+	X61587 TSC_hg19_v1_chr11_-_3862185 NM_001665	-53480	-	BC104177 BC104178 TSC_hg19_v1_chr11_-_3862161	-53524	-	NM_001033 TSC_hg19_v1_chr11_+_4116034 AK222786 AK299629 AK307950 X59543	200310	+	TSC_hg19_v1_chr11_+_4116069 X59617 AK303394	200387	+	TSC_hg19_v1_chr11_+_4116085 AK297988 BC006498 CU675435 DQ893028 DQ896272	200480	+	NM_003156|STIM1|6786|stromal interaction molecule 1##U52426|STIM1|6786|stromal interaction molecule 1##HQ317451|STIM1|6786|stromal interaction molecule 1##BC021300|STIM1|6786|stromal interaction molecule 1##X61587|RHOG|391|ras homolog gene family, member G (rho G)##NM_001665|RHOG|391|ras homolog gene family, member G (rho G)##BC104177|RHOG|391|ras homolog gene family, member G (rho G)##BC104178|RHOG|391|ras homolog gene family, member G (rho G)##NM_001033|RRM1|6240|ribonucleotide reductase M1##AK222786|RRM1|6240|ribonucleotide reductase M1##AK299629|RRM1|6240|ribonucleotide reductase M1##AK307950|RRM1|6240|ribonucleotide reductase M1##X59543|RRM1|6240|ribonucleotide reductase M1##X59617|RRM1|6240|ribonucleotide reductase M1##AK303394|RRM1|6240|ribonucleotide reductase M1##AK297988|RRM1|6240|ribonucleotide reductase M1##BC006498|RRM1|6240|ribonucleotide reductase M1##DQ893028|RRM1|6240|ribonucleotide reductase M1##DQ896272|RRM1|6240|ribonucleotide reductase M1	0.0	0.0	
chr1	153916185	153916290	reg1014883.p1	3.870	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	-20786	-	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	-168371	+	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	-215684	+	TSC_hg19_v1_chr1_-_153919148 AB007945 NM_014856	2909	-	AY726597 AK096382 BC053562 TSC_hg19_v1_chr1_-_153931074 AF289574	14756	-	TSC_hg19_v1_chr1_-_153931089 AK223559	14847	-	AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B##BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##AB007945|DENND4B|9909|DENN/MADD domain containing 4B##NM_014856|DENND4B|9909|DENN/MADD domain containing 4B##AY726597|CRTC2|200186|CREB regulated transcription coactivator 2##AK096382|CRTC2|200186|CREB regulated transcription coactivator 2##BC053562|CRTC2|200186|CREB regulated transcription coactivator 2##AF289574|CRTC2|200186|CREB regulated transcription coactivator 2##AK223559|CRTC2|200186|CREB regulated transcription coactivator 2	0.997031	0.0	
chr13	30069348	30069475	reg1002706.p1	3.870	+	BC032481 NM_015233 AK293970 BC119654 BC119655 BC129985	-66601	+	BC150245 AB018317 NM_001033602 AB384524	-470636	+	BX537565 BC060850 BC068556 TSC_hg19_v1_chr13_-_29293107 AK093932 AX748370 BC036662 NM_001135919 NM_181785	-776356	-	AK301633 TSC_hg19_v1_chr13_+_30070532	1096	+	X59155 X57303 TSC_hg19_v1_chr13_-_30169595 AK312818 BC063303	100210	-	TSC_hg19_v1_chr13_-_30169826 NM_003045	100409	-	BC032481|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_015233|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AK293970|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119654|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC119655|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC129985|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BC150245|MTUS2|23281|microtubule associated tumor suppressor candidate 2##AB018317|MTUS2|23281|microtubule associated tumor suppressor candidate 2##NM_001033602|MTUS2|23281|microtubule associated tumor suppressor candidate 2##BX537565|SLC46A3|283537|solute carrier family 46, member 3##BC060850|SLC46A3|283537|solute carrier family 46, member 3##BC068556|SLC46A3|283537|solute carrier family 46, member 3##AK093932|SLC46A3|283537|solute carrier family 46, member 3##BC036662|SLC46A3|283537|solute carrier family 46, member 3##NM_001135919|SLC46A3|283537|solute carrier family 46, member 3##NM_181785|SLC46A3|283537|solute carrier family 46, member 3##AK301633|MTUS2|23281|microtubule associated tumor suppressor candidate 2##X59155|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##X57303|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##AK312818|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##BC063303|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1##NM_003045|SLC7A1|6541|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	2.10871	0.0	
chr13	66715054	66715159	reg1012720.p2	3.870	+	AK289924 NM_022843	-4725452	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-4725853	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-5743627	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	1089398	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	3967435	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	5725153	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.992408	0.0	denovo_WM_7:-37:0.956
chr14	21085952	21086081	reg1014221.p1	3.870	+	HQ258082 AY665807 BC130347 BC130349 NM_001024822	-27086	-	BX161458 NM_145250	-27614	-	AY907670 EF061296 EF061297 EF061298 EF061299 EF061300 EF061301 EF061302 EF061303 EF061304 NM_001001673 NM_001110356 NM_001110357 NM_001110358 NM_001110359 NM_001110360 NM_001110361	-56927	-	NM_001001968	23833	-	FJ236304 NM_001145 AK092422 NM_002937	66337	+	TSC_hg19_v1_chr14_+_21152776 AK313989 BC015520 BC054880 BX248010	66760	+	HQ258082|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##AY665807|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BC130347|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BC130349|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##NM_001024822|RNASE12|493901|ribonuclease, RNase A family, 12 (non-active)##BX161458|RNASE11|122651|ribonuclease, RNase A family, 11 (non-active)##NM_145250|RNASE11|122651|ribonuclease, RNase A family, 11 (non-active)##AY907670|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061296|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061297|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061298|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061299|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061300|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061301|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061302|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061303|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##EF061304|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001001673|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110356|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110357|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110358|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110359|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110360|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001110361|RNASE9|390443|ribonuclease, RNase A family, 9 (non-active)##NM_001001968|OR6S1|341799|olfactory receptor, family 6, subfamily S, member 1##FJ236304|ANG|283|angiogenin, ribonuclease, RNase A family, 5##NM_001145|ANG|283|angiogenin, ribonuclease, RNase A family, 5##AK092422|RNASE4|6038|ribonuclease, RNase A family, 4##NM_002937|RNASE4|6038|ribonuclease, RNase A family, 4##AK313989|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BC015520|RNASE4|6038|ribonuclease, RNase A family, 4##BC054880|ANG|283|angiogenin, ribonuclease, RNase A family, 5##BX248010|RNASE4|6038|ribonuclease, RNase A family, 4	0.0	0.0	
chr1	53173746	53173846	reg1013156.p1	3.870	+	TSC_hg19_v1_chr1_-_53164026 BC005992 AK022501 NM_023077	-9766	-	TSC_hg19_v1_chr1_-_53164020 AK225087	-9779	-	TSC_hg19_v1_chr1_-_53164009 BC015313 AK225041	-9798	-	TSC_hg19_v1_chr1_+_53192124 AK296460 NM_024646 AB051517	18322	+	TSC_hg19_v1_chr1_-_53238345 D28429	64547	-	AY271826 NM_001004339	134386	+	BC005992|SELRC1|65260|Sel1 repeat containing 1##AK022501|SELRC1|65260|Sel1 repeat containing 1##NM_023077|SELRC1|65260|Sel1 repeat containing 1##AK225087|SELRC1|65260|Sel1 repeat containing 1##BC015313|SELRC1|65260|Sel1 repeat containing 1##AK225041|SELRC1|65260|Sel1 repeat containing 1##AK296460|ZYG11B|79699|zyg-11 homolog B (C. elegans)##NM_024646|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AB051517|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AY271826|ZYG11A|440590|zyg-11 homolog A (C. elegans)##NM_001004339|ZYG11A|440590|zyg-11 homolog A (C. elegans)	0.983591	0.0	denovo_WM_7:15:0.484
chr17	16312356	16312482	reg1007663.p3	3.870	+	AK129498 BC015127 BC026301 BC031027 BC038999 TSC_hg19_v1_chr17_+_16284408 BC046123 BC009301	-28005	+	TSC_hg19_v1_chr17_+_16284404 AK300882	-28017	+	TSC_hg19_v1_chr17_+_16284371 BC000379 NM_018955	-28055	+	TSC_hg19_v1_chr17_+_16318881 AK289705 NM_016113 BC018926 BC051305	6454	+	TSC_hg19_v1_chr17_+_16318917 AK001896	6499	+	TSC_hg19_v1_chr17_+_16319096 AF103906	6686	+	AK129498|UBB|7314|ubiquitin B##BC015127|UBB|7314|ubiquitin B##BC026301|UBB|7314|ubiquitin B##BC031027|UBB|7314|ubiquitin B##BC038999|UBB|7314|ubiquitin B##BC046123|UBB|7314|ubiquitin B##BC009301|UBB|7314|ubiquitin B##AK300882|UBB|7314|ubiquitin B##BC000379|UBB|7314|ubiquitin B##NM_018955|UBB|7314|ubiquitin B##AK289705|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##NM_016113|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##BC018926|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##BC051305|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##AK001896|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2##AF103906|TRPV2|51393|transient receptor potential cation channel, subfamily V, member 2	0.997654	0.0	denovo_WM_7:-6:0.817
chr17	30264019	30264199	reg1004235.p2	3.870	+	TSC_hg19_v1_chr17_+_30264067 D63881 BC018583	-34	+	TSC_hg19_v1_chr17_+_30264057 AK290014	-52	+	TSC_hg19_v1_chr17_+_30264046 NM_015355	-66	+	TSC_hg19_v1_chr17_+_30264164 BC015704	54	+	AB385289 TSC_hg19_v1_chr17_+_30264319	185	+	AY386261 AK302740 BC117373 BC143578 BC143581 AK310287 NM_052888 HQ258530 AJ314647	83984	+	D63881|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC018583|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AK290014|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##NM_015355|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC015704|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##AY386261|LRRC37B|114659|leucine rich repeat containing 37B##AK302740|LRRC37B|114659|leucine rich repeat containing 37B##BC117373|LRRC37B|114659|leucine rich repeat containing 37B##BC143578|LRRC37B|114659|leucine rich repeat containing 37B##BC143581|LRRC37B|114659|leucine rich repeat containing 37B##AK310287|LRRC37B|114659|leucine rich repeat containing 37B##NM_052888|LRRC37B|114659|leucine rich repeat containing 37B##HQ258530|LRRC37B|114659|leucine rich repeat containing 37B##AJ314647|LRRC37B|114659|leucine rich repeat containing 37B	0.0	0.0	
chr2	132382351	132382426	reg1017986.p1	3.870	+	BC063387 AB299086 AB299087 BC016861 NM_138770 CU677751 CU687684	-96882	+	AK304811 TSC_hg19_v1_chr2_+_132250648 AK293811 AK300337 AK303293 AK308371 BC093080	-131803	+	TSC_hg19_v1_chr2_-_132250072 NM_001085365	-132327	-	AF038169 NM_013310	97675	+	BC043584 NM_214461	176845	-	AK122643 NM_001508	791758	+	BC063387|CCDC74A|90557|coiled-coil domain containing 74A##AB299086|CCDC74A|90557|coiled-coil domain containing 74A##AB299087|CCDC74A|90557|coiled-coil domain containing 74A##BC016861|CCDC74A|90557|coiled-coil domain containing 74A##NM_138770|CCDC74A|90557|coiled-coil domain containing 74A##AK304811|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK293811|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK300337|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK303293|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##AK308371|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##BC093080|LOC150776|150776|sphingomyelin phosphodiesterase 4, neutral membrane pseudogene##NM_001085365|MZT2A|653784|mitotic spindle organizing protein 2A##AF038169|C2orf27A|29798|chromosome 2 open reading frame 27A##NM_013310|C2orf27A|29798|chromosome 2 open reading frame 27A##BC043584|C2orf27B|408029|chromosome 2 open reading frame 27B##NM_214461|C2orf27B|408029|chromosome 2 open reading frame 27B##AK122643|GPR39|2863|G protein-coupled receptor 39##NM_001508|GPR39|2863|G protein-coupled receptor 39	0.0	0.0	
chr2	172249961	172250141	reg1017497.p1	3.870	+	AK090779 NM_001136554	-162228	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-232552	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-232955	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	40475	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	40711	+	TSC_hg19_v1_chr2_+_172290824 CR933646	40760	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	0.0	0.0	
chr9	132753153	132753228	reg1012845.p2	3.870	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-155425	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-155468	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-155506	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	52164	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	52298	-	BC039728 NM_001136557 NM_001136558 NM_020960	62794	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.99696	0.0	
chr1	249161173	249161332	reg1006166.p1	3.869	+	TSC_hg19_v1_chr1_-_249153285 NM_001193328 NM_017865	-7950	-	AK309421 AL133100 TSC_hg19_v1_chr1_-_249153150 AK302187 NM_001136036 AK001070 AK298899 BC002948 AK000538 AK225535	-8164	-	TSC_hg19_v1_chr1_+_249132593 BC068506 BC008872	-28606	+	TSC_hg19_v1_chr1_+_249200433 AK123219 BC063785 NM_001017434 NM_170725 BX647065 AK298248	39171	+	None	None	None	None	None	None	NM_001193328|ZNF692|55657|zinc finger protein 692##NM_017865|ZNF692|55657|zinc finger protein 692##AK309421|ZNF692|55657|zinc finger protein 692##AL133100|ZNF692|55657|zinc finger protein 692##AK302187|ZNF692|55657|zinc finger protein 692##NM_001136036|ZNF692|55657|zinc finger protein 692##AK001070|ZNF692|55657|zinc finger protein 692##AK298899|ZNF692|55657|zinc finger protein 692##BC002948|ZNF692|55657|zinc finger protein 692##AK000538|ZNF692|55657|zinc finger protein 692##AK225535|ZNF692|55657|zinc finger protein 692##BC068506|ZNF672|79894|zinc finger protein 672##BC008872|ZNF672|79894|zinc finger protein 672##AK123219|PGBD2|267002|piggyBac transposable element derived 2##BC063785|PGBD2|267002|piggyBac transposable element derived 2##NM_001017434|PGBD2|267002|piggyBac transposable element derived 2##NM_170725|PGBD2|267002|piggyBac transposable element derived 2##BX647065|PGBD2|267002|piggyBac transposable element derived 2##AK298248|PGBD2|267002|piggyBac transposable element derived 2	2.978264	0.0	denovo_WM_7:36:0.249	denovo_WM_7:37:0.204
chr22	37664158	37664322	reg1011795.p1	3.869	+	TSC_hg19_v1_chr22_-_37640315 AK096924 BC001485 NM_002872	-23939	-	AB463213 AF498965 BT006919 CU674734 M29871 CU013155 CU013443 DQ893288 DQ896620 EU176461 TSC_hg19_v1_chr22_-_37640247 CR456555	-24019	-	BC042068 NM_001051 AK291165	-55857	-	AF125349 AF075458 NM_013385 TSC_hg19_v1_chr22_+_37678513	14228	+	TSC_hg19_v1_chr22_+_37678548 AK304453 BC017780	14297	+	BC033693 BC041161 AK024428 TSC_hg19_v1_chr22_+_37678584 CR456551 AK315052	14336	+	AK096924|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##BC001485|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##NM_002872|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##AF498965|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##BT006919|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##M29871|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CU013155|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CU013443|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##DQ893288|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##DQ896620|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##EU176461|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##CR456555|RAC2|5880|ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2)##BC042068|SSTR3|6753|somatostatin receptor 3##NM_001051|SSTR3|6753|somatostatin receptor 3##AK291165|SSTR3|6753|somatostatin receptor 3##AF125349|CYTH4|27128|cytohesin 4##AF075458|CYTH4|27128|cytohesin 4##NM_013385|CYTH4|27128|cytohesin 4##AK304453|CYTH4|27128|cytohesin 4##BC017780|CYTH4|27128|cytohesin 4##BC033693|CYTH4|27128|cytohesin 4##BC041161|CYTH4|27128|cytohesin 4##AK024428|CYTH4|27128|cytohesin 4##CR456551|CYTH4|27128|cytohesin 4##AK315052|CYTH4|27128|cytohesin 4	0.0	0.0	
chr2	39455377	39455490	reg1019617.p2	3.869	+	TSC_hg19_v1_chr2_-_39348166 AK290228	-107274	-	L13857 AB463274 NM_005633	-107851	-	TSC_hg19_v1_chr2_-_39187477 BC030087	-267953	-	AY845084 AY847283 NM_001009565 BC144460	1271	-	EU832785 GQ129258 AB384884 NM_003618 TSC_hg19_v1_chr2_-_39664286 AK314487	208776	-	TSC_hg19_v1_chr2_-_39664294 BC060880	208868	-	AK290228|SOS1|6654|son of sevenless homolog 1 (Drosophila)##L13857|SOS1|6654|son of sevenless homolog 1 (Drosophila)##NM_005633|SOS1|6654|son of sevenless homolog 1 (Drosophila)##BC030087|LOC375196|375196|uncharacterized LOC375196##AY845084|CDKL4|344387|cyclin-dependent kinase-like 4##AY847283|CDKL4|344387|cyclin-dependent kinase-like 4##NM_001009565|CDKL4|344387|cyclin-dependent kinase-like 4##BC144460|CDKL4|344387|cyclin-dependent kinase-like 4##EU832785|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##GQ129258|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##NM_003618|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##AK314487|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3##BC060880|MAP4K3|8491|mitogen-activated protein kinase kinase kinase kinase 3	0.0	0.981759	CTCF.p2:-9:0.982
chr7	104652054	104652234	reg1005901.p1	3.869	+	TSC_hg19_v1_chr7_-_104567089 BC050337	-85054	-	AY260763 NM_199000 BC129937 BC129938 BC129941 AK299759 AK124251	-682926	+	CU692820 DQ892274 DQ895475 TSC_hg19_v1_chr7_-_103848462 AF081459 AF049127 AF047599 BC023652 U92538 AK302122 AK313596 AK292285 AK223361 NM_002553 NM_181747	-803713	-	TSC_hg19_v1_chr7_-_104653491 AK124046	1338	-	TSC_hg19_v1_chr7_-_104654062 AK094372	1930	-	TSC_hg19_v1_chr7_-_104654534 BC017007 AK123476	2358	-	BC050337|LOC723809|723809|uncharacterized LOC723809##AY260763|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##NM_199000|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129937|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129938|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##BC129941|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK299759|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##AK124251|LHFPL3|375612|lipoma HMGIC fusion partner-like 3##DQ892274|ORC5|5001|origin recognition complex, subunit 5##DQ895475|ORC5|5001|origin recognition complex, subunit 5##AF081459|ORC5|5001|origin recognition complex, subunit 5##AF049127|ORC5|5001|origin recognition complex, subunit 5##AF047599|ORC5|5001|origin recognition complex, subunit 5##BC023652|ORC5|5001|origin recognition complex, subunit 5##U92538|ORC5|5001|origin recognition complex, subunit 5##AK302122|ORC5|5001|origin recognition complex, subunit 5##AK313596|ORC5|5001|origin recognition complex, subunit 5##AK292285|ORC5|5001|origin recognition complex, subunit 5##AK223361|ORC5|5001|origin recognition complex, subunit 5##NM_002553|ORC5|5001|origin recognition complex, subunit 5##NM_181747|ORC5|5001|origin recognition complex, subunit 5##AK124046|LOC100216545|100216545|uncharacterized LOC100216545##AK094372|LOC100216545|100216545|uncharacterized LOC100216545##BC017007|LOC100216545|100216545|uncharacterized LOC100216545##AK123476|LOC100216545|100216545|uncharacterized LOC100216545	0.0	0.0	
chr7	149192027	149192131	reg1015804.p1	3.869	+	TSC_hg19_v1_chr7_-_149157908 AB033111 NM_015694	-34120	-	AK098351 AK310453 AK310396 TSC_hg19_v1_chr7_+_148982401 AK303492	-209693	+	TSC_hg19_v1_chr7_+_148959286 AK131504 NM_001195220 BC131569 AB528912	-232759	+	TSC_hg19_v1_chr7_-_149194795 BC068505 BC035586	2706	-	TSC_hg19_v1_chr7_-_149194830 AK291814	2761	-	TSC_hg19_v1_chr7_-_149194899 NM_001163474 NM_152557 AK128244	2819	-	AB033111|ZNF777|27153|zinc finger protein 777##NM_015694|ZNF777|27153|zinc finger protein 777##AK098351|LOC155060|155060|AI894139 pseudogene##AK310453|LOC155060|155060|AI894139 pseudogene##AK310396|LOC155060|155060|AI894139 pseudogene##AK303492|LOC155060|155060|AI894139 pseudogene##NM_001195220|ZNF783|100289678|zinc finger family member 783##BC068505|ZNF746|155061|zinc finger protein 746##BC035586|ZNF746|155061|zinc finger protein 746##AK291814|ZNF746|155061|zinc finger protein 746##NM_001163474|ZNF746|155061|zinc finger protein 746##NM_152557|ZNF746|155061|zinc finger protein 746##AK128244|ZNF746|155061|zinc finger protein 746	0.977876	0.0	denovo_WM_7:63:0.511
chr9	94667790	94667891	reg1015667.p1	3.869	+	TSC_hg19_v1_chr9_-_94186159 NM_005384	-481658	-	AK313970 S79880 U26173 X64318 TSC_hg19_v1_chr9_-_94186112	-481796	-	BC020722 TSC_hg19_v1_chr9_-_94124201 NM_001698	-543641	-	TSC_hg19_v1_chr9_-_94711095 BC033697	43288	-	TSC_hg19_v1_chr9_-_94712441 BC051273 BC126454 BC130522 M97639 NM_004560	44549	-	AB209757 CU675539 CU686661 Y08685 AK291546 TSC_hg19_v1_chr9_-_94877661 AK299153 BC068537 BC007085 AK098344 NM_006415 NM_178324	209824	-	NM_005384|NFIL3|4783|nuclear factor, interleukin 3 regulated##AK313970|NFIL3|4783|nuclear factor, interleukin 3 regulated##S79880|NFIL3|4783|nuclear factor, interleukin 3 regulated##U26173|NFIL3|4783|nuclear factor, interleukin 3 regulated##X64318|NFIL3|4783|nuclear factor, interleukin 3 regulated##BC020722|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##NM_001698|AUH|549|AU RNA binding protein/enoyl-CoA hydratase##BC033697|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC051273|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC126454|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##BC130522|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##M97639|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##NM_004560|ROR2|4920|receptor tyrosine kinase-like orphan receptor 2##AB209757|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##Y08685|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK291546|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK299153|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC068537|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##BC007085|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##AK098344|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_006415|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1##NM_178324|SPTLC1|10558|serine palmitoyltransferase, long chain base subunit 1	0.0	0.0	
chr10	81299545	81299645	reg1017044.p2	3.868	+	BC070048 NM_001099692	-27239	+	TSC_hg19_v1_chr10_-_81205381 AK308876 AK075279 BC053564 BC039249 BC028617 NM_153367	-94335	-	TSC_hg19_v1_chr10_+_81107279 AB529152 CU678858 EU831447	-192308	+	BC111571 K03475 BC157866 BC157890 BC171875 S69685 S69686 AK225599 AK298041 AK298074 AK298114 AK313179 AK316192 HQ021421 HQ021422 HQ021423 HQ021424 HQ021425 HQ021426 HQ021427 HQ021428 HQ021429 HQ021430 HQ021431 HQ021432 NM_001098668 S69680 S69681 S69683 S69791	20556	-	AK290703 AK298002 AK298029 AK298034 NM_001093770 NM_001164644 NM_001164645 NM_001164646 NM_001164647 NM_005411 S69686 AK316196 HQ021433 HQ021434 HQ021435 HQ021436 HQ021437 HQ021438 HQ021439 HQ021440 HQ021441 HQ021442 S69680 S69681 AK298092 AK309518 S69685 S69687 S69688 S69690 BC026229 M13686 BC111570	71109	+	BC022318 NM_003019	409265	-	BC070048|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##NM_001099692|EIF5AL1|143244|eukaryotic translation initiation factor 5A-like 1##AK308876|ZCCHC24|219654|zinc finger, CCHC domain containing 24##AK075279|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC053564|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC039249|ZCCHC24|219654|zinc finger, CCHC domain containing 24##BC028617|ZCCHC24|219654|zinc finger, CCHC domain containing 24##NM_153367|ZCCHC24|219654|zinc finger, CCHC domain containing 24##EU831447|PPIF|10105|peptidylprolyl isomerase F##BC111571|SFTPA2|729238|surfactant protein A2##K03475|SFTPA2|729238|surfactant protein A2##BC157866|SFTPA2|729238|surfactant protein A2##BC157890|SFTPA2|729238|surfactant protein A2##BC171875|SFTPA1|653509|surfactant protein A1##AK225599|SFTPA2|729238|surfactant protein A2##AK298041|SFTPA2|729238|surfactant protein A2##AK298074|SFTPA2|729238|surfactant protein A2##AK298114|SFTPA2|729238|surfactant protein A2##AK313179|SFTPA2|729238|surfactant protein A2##AK316192|SFTPA2|729238|surfactant protein A2##HQ021421|SFTPA2|729238|surfactant protein A2##HQ021422|SFTPA2|729238|surfactant protein A2##HQ021423|SFTPA2|729238|surfactant protein A2##HQ021424|SFTPA2|729238|surfactant protein A2##HQ021425|SFTPA2|729238|surfactant protein A2##HQ021426|SFTPA2|729238|surfactant protein A2##HQ021427|SFTPA2|729238|surfactant protein A2##HQ021428|SFTPA2|729238|surfactant protein A2##HQ021429|SFTPA2|729238|surfactant protein A2##HQ021430|SFTPA2|729238|surfactant protein A2##HQ021431|SFTPA2|729238|surfactant protein A2##HQ021432|SFTPA2|729238|surfactant protein A2##NM_001098668|SFTPA2|729238|surfactant protein A2##AK290703|SFTPA1|653509|surfactant protein A1##AK298002|SFTPA1|653509|surfactant protein A1##AK298029|SFTPA1|653509|surfactant protein A1##AK298034|SFTPA1|653509|surfactant protein A1##NM_001093770|SFTPA1|653509|surfactant protein A1##NM_001164644|SFTPA1|653509|surfactant protein A1##NM_001164645|SFTPA1|653509|surfactant protein A1##NM_001164646|SFTPA1|653509|surfactant protein A1##NM_001164647|SFTPA1|653509|surfactant protein A1##NM_005411|SFTPA1|653509|surfactant protein A1##AK316196|SFTPA1|653509|surfactant protein A1##HQ021433|SFTPA1|653509|surfactant protein A1##HQ021434|SFTPA1|653509|surfactant protein A1##HQ021435|SFTPA1|653509|surfactant protein A1##HQ021436|SFTPA1|653509|surfactant protein A1##HQ021437|SFTPA1|653509|surfactant protein A1##HQ021438|SFTPA1|653509|surfactant protein A1##HQ021439|SFTPA1|653509|surfactant protein A1##HQ021440|SFTPA1|653509|surfactant protein A1##HQ021441|SFTPA1|653509|surfactant protein A1##HQ021442|SFTPA1|653509|surfactant protein A1##AK298092|SFTPA1|653509|surfactant protein A1##AK309518|SFTPA1|653509|surfactant protein A1##BC026229|SFTPA1|653509|surfactant protein A1##BC111570|SFTPA1|653509|surfactant protein A1##BC022318|SFTPD|6441|surfactant protein D##NM_003019|SFTPD|6441|surfactant protein D	0.996509	0.0	
chr11	5705962	5706142	reg1016547.p1	3.868	+	TSC_hg19_v1_chr11_-_5701373 AB362928 AY625000 CU676898 DQ288685 JF928461 JF928462 AF220025 AF220026 AF220027 AF220028 AF220029	-4636	-	NM_130390 AB039904	-52555	+	NM_021616 AK027876 AF220143 AF220144	-59826	+	TSC_hg19_v1_chr11_-_5706305 BC021258 BX647152 AK027593 NM_033034 NM_033092 NM_033093	211	-	AK298934 NM_001199573 NM_006074 TSC_hg19_v1_chr11_+_5710861	4794	+	TSC_hg19_v1_chr11_+_5711025 AK308221 AK310098 AK311659 BC022281 AK298715 BC035582 AK290434 X82200 AK308796 AK301192	4966	+	AB362928|TRIM5|85363|tripartite motif containing 5##AY625000|TRIM5|85363|tripartite motif containing 5##DQ288685|TRIM5|85363|tripartite motif containing 5##AF220025|TRIM5|85363|tripartite motif containing 5##AF220026|TRIM5|85363|tripartite motif containing 5##AF220027|TRIM5|85363|tripartite motif containing 5##AF220028|TRIM5|85363|tripartite motif containing 5##AF220029|TRIM5|85363|tripartite motif containing 5##NM_130390|TRIM34|53840|tripartite motif containing 34##AB039904|TRIM34|53840|tripartite motif containing 34##NM_021616|TRIM34|53840|tripartite motif containing 34##AK027876|TRIM34|53840|tripartite motif containing 34##AF220143|TRIM34|53840|tripartite motif containing 34##AF220144|TRIM34|53840|tripartite motif containing 34##BC021258|TRIM5|85363|tripartite motif containing 5##BX647152|TRIM5|85363|tripartite motif containing 5##AK027593|TRIM5|85363|tripartite motif containing 5##NM_033034|TRIM5|85363|tripartite motif containing 5##NM_033092|TRIM5|85363|tripartite motif containing 5##NM_033093|TRIM5|85363|tripartite motif containing 5##AK298934|TRIM22|10346|tripartite motif containing 22##NM_001199573|TRIM22|10346|tripartite motif containing 22##NM_006074|TRIM22|10346|tripartite motif containing 22##AK308221|TRIM22|10346|tripartite motif containing 22##AK310098|TRIM22|10346|tripartite motif containing 22##BC022281|TRIM22|10346|tripartite motif containing 22##AK298715|TRIM22|10346|tripartite motif containing 22##BC035582|TRIM22|10346|tripartite motif containing 22##AK290434|TRIM22|10346|tripartite motif containing 22##X82200|TRIM22|10346|tripartite motif containing 22##AK308796|TRIM22|10346|tripartite motif containing 22##AK301192|TRIM22|10346|tripartite motif containing 22	0.0	0.0	
chr1	204878371	204878480	reg1016653.p1	3.868	+	TSC_hg19_v1_chr1_+_204839989 AK308686	-38442	+	TSC_hg19_v1_chr1_+_204797779 BC040674 NM_001005388 NM_001005389 NM_001160332 NM_001160333 NM_015090 AK295291 AK299262 AK090639 AX746553	-80613	+	AF030435 NM_006338 AK226055 TSC_hg19_v1_chr1_-_204654568 AK312408 BC034047 BC068541 NM_201630	-223834	-	NM_001160331 BC137013 BC144454 BC144455 AB384522	34973	+	TSC_hg19_v1_chr1_+_204938044 BC008124	59637	+	TSC_hg19_v1_chr1_+_205012339 NM_005076	133913	+	AK308686|NFASC|23114|neurofascin##BC040674|NFASC|23114|neurofascin##NM_001005388|NFASC|23114|neurofascin##NM_001005389|NFASC|23114|neurofascin##NM_001160332|NFASC|23114|neurofascin##NM_001160333|NFASC|23114|neurofascin##NM_015090|NFASC|23114|neurofascin##AK295291|NFASC|23114|neurofascin##AK299262|NFASC|23114|neurofascin##AK090639|NFASC|23114|neurofascin##AF030435|LRRN2|10446|leucine rich repeat neuronal 2##NM_006338|LRRN2|10446|leucine rich repeat neuronal 2##AK226055|LRRN2|10446|leucine rich repeat neuronal 2##AK312408|LRRN2|10446|leucine rich repeat neuronal 2##BC034047|LRRN2|10446|leucine rich repeat neuronal 2##BC068541|LRRN2|10446|leucine rich repeat neuronal 2##NM_201630|LRRN2|10446|leucine rich repeat neuronal 2##NM_001160331|NFASC|23114|neurofascin##BC137013|NFASC|23114|neurofascin##BC144454|NFASC|23114|neurofascin##BC144455|NFASC|23114|neurofascin##BC008124|NFASC|23114|neurofascin##NM_005076|CNTN2|6900|contactin 2 (axonal)	0.0	0.0	
chr16	69379705	69379885	reg1014200.p1	3.868	+	TSC_hg19_v1_chr16_+_69373681 AK315355 BC015941 AF085360 AF132971 AF161528 AB062398 AB062479 AK001158 CU677525 DQ891111 DQ894291	-6091	+	TSC_hg19_v1_chr16_-_69373478 BC121022 BC121023 AK056344 NM_032382 AK302605	-6290	-	NM_001199434 NM_016101 TSC_hg19_v1_chr16_+_69373547 AB112439	-6293	+	DQ891397 DQ894576 CU676736 AY358268 TSC_hg19_v1_chr16_-_69385690 BC020827 NM_144676	5888	-	TSC_hg19_v1_chr16_-_69419641 U95970	39840	-	TSC_hg19_v1_chr16_-_69419884 AF002999 BC024890 NM_005652	40065	-	AK315355|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##BC015941|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AF085360|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AF132971|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AF161528|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AB062398|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AB062479|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AK001158|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##DQ891111|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##DQ894291|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##BC121022|COG8|84342|component of oligomeric golgi complex 8##BC121023|COG8|84342|component of oligomeric golgi complex 8##AK056344|COG8|84342|component of oligomeric golgi complex 8##NM_032382|COG8|84342|component of oligomeric golgi complex 8##AK302605|COG8|84342|component of oligomeric golgi complex 8##NM_001199434|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##NM_016101|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##AB112439|NIP7|51388|nuclear import 7 homolog (S. cerevisiae)##DQ891397|TMED6|146456|transmembrane emp24 protein transport domain containing 6##DQ894576|TMED6|146456|transmembrane emp24 protein transport domain containing 6##AY358268|TMED6|146456|transmembrane emp24 protein transport domain containing 6##BC020827|TMED6|146456|transmembrane emp24 protein transport domain containing 6##NM_144676|TMED6|146456|transmembrane emp24 protein transport domain containing 6##U95970|TERF2|7014|telomeric repeat binding factor 2##AF002999|TERF2|7014|telomeric repeat binding factor 2##BC024890|TERF2|7014|telomeric repeat binding factor 2##NM_005652|TERF2|7014|telomeric repeat binding factor 2	0.0	0.0	
chr16	75599222	75599338	reg1012408.p2	3.868	+	CU679755 TSC_hg19_v1_chr16_-_75590137 AK096650 NM_001077416 BC010609 AK307263 AK025820 BC063677 AY358612 AK290483 NM_001077418 NM_001077419	-9114	-	AF246718 NM_024533	-30213	-	TSC_hg19_v1_chr16_-_75529303 AK311527 AK093904	-69983	-	AB030710 NM_007285 TSC_hg19_v1_chr16_+_75600274 BC029601	981	+	AK289788 TSC_hg19_v1_chr16_+_75600276 AF087848 AK311266 AF077046 AJ010569 BC014594 BC005985 AB463663 AM393324 DQ893101 DQ896373 CR542217	1050	+	AK001687 AK314652 TSC_hg19_v1_chr16_-_75657163 BC002758 AK296834 NM_012091	57906	-	AK096650|TMEM231|79583|transmembrane protein 231##NM_001077416|TMEM231|79583|transmembrane protein 231##BC010609|TMEM231|79583|transmembrane protein 231##AK307263|TMEM231|79583|transmembrane protein 231##AK025820|TMEM231|79583|transmembrane protein 231##BC063677|TMEM231|79583|transmembrane protein 231##AY358612|TMEM231|79583|transmembrane protein 231##AK290483|TMEM231|79583|transmembrane protein 231##NM_001077418|TMEM231|79583|transmembrane protein 231##NM_001077419|TMEM231|79583|transmembrane protein 231##AF246718|CHST5|23563|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5##NM_024533|CHST5|23563|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5##AB030710|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##NM_007285|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC029601|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AK289788|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AF087848|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AK311266|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AF077046|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AJ010569|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC014594|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##BC005985|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AM393324|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##DQ893101|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##DQ896373|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##CR542217|GABARAPL2|11345|GABA(A) receptor-associated protein-like 2##AK001687|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK314652|ADAT1|23536|adenosine deaminase, tRNA-specific 1##BC002758|ADAT1|23536|adenosine deaminase, tRNA-specific 1##AK296834|ADAT1|23536|adenosine deaminase, tRNA-specific 1##NM_012091|ADAT1|23536|adenosine deaminase, tRNA-specific 1	0.0	0.0	
chr19	46849962	46850142	reg1002500.p2	3.868	+	AK021881 TSC_hg19_v1_chr19_+_46844054	-6044	+	AK314680 NM_152794 AB054067	-43163	+	NM_022462 NM_152796 AK297828 AK304747 TSC_hg19_v1_chr19_+_46801682 AK021421 AK021653 AK024095	-48392	+	TSC_hg19_v1_chr19_+_46850343 NM_001204284 NM_006247 BC001970 AK223222 AK312683	242	+	TSC_hg19_v1_chr19_+_46850348 AB527518 AK293402 AK297095 BT007275 BC000750 BC001831 X89416 U25174	307	+	AK297668 AL136609 JN703457 NM_032040	66819	-	AK021881|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK314680|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_152794|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AB054067|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_022462|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_152796|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK297828|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK304747|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK021421|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK021653|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK024095|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_001204284|PPP5C|5536|protein phosphatase 5, catalytic subunit##NM_006247|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001970|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK223222|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK312683|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK293402|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297095|PPP5C|5536|protein phosphatase 5, catalytic subunit##BT007275|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC000750|PPP5C|5536|protein phosphatase 5, catalytic subunit##BC001831|PPP5C|5536|protein phosphatase 5, catalytic subunit##X89416|PPP5C|5536|protein phosphatase 5, catalytic subunit##U25174|PPP5C|5536|protein phosphatase 5, catalytic subunit##AK297668|CCDC8|83987|coiled-coil domain containing 8##AL136609|CCDC8|83987|coiled-coil domain containing 8##JN703457|CCDC8|83987|coiled-coil domain containing 8##NM_032040|CCDC8|83987|coiled-coil domain containing 8	0.0	0.0	
chr22	26644304	26644370	reg1016340.p2	3.868	+	CR456574 CU013173 CU013461 AB041736 TSC_hg19_v1_chr22_+_26565704	-78674	+	TSC_hg19_v1_chr22_+_26565455 AB023144 BC126115 BC143851 BC143854	-78840	+	TSC_hg19_v1_chr22_+_26565427 AY358405 NM_001184773 NM_001184774 NM_001184775 NM_001184776 NM_001184777 NM_021115	-78900	+	TSC_hg19_v1_chr22_+_26825246 NM_020437 BC036753 AK315112	180987	+	AK097886 BC035614 AK054717 AL365512 NM_152841	231126	-	TSC_hg19_v1_chr22_-_26879750 AK057648 AK290211	235405	-	CR456574|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013173|SEZ6L|23544|seizure related 6 homolog (mouse)-like##CU013461|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB041736|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AB023144|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC126115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143851|SEZ6L|23544|seizure related 6 homolog (mouse)-like##BC143854|SEZ6L|23544|seizure related 6 homolog (mouse)-like##AY358405|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184773|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184774|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184775|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184776|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_001184777|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_021115|SEZ6L|23544|seizure related 6 homolog (mouse)-like##NM_020437|ASPHD2|57168|aspartate beta-hydroxylase domain containing 2##BC036753|ASPHD2|57168|aspartate beta-hydroxylase domain containing 2##AK315112|ASPHD2|57168|aspartate beta-hydroxylase domain containing 2##AK097886|HPS4|89781|Hermansky-Pudlak syndrome 4##BC035614|HPS4|89781|Hermansky-Pudlak syndrome 4##AK054717|HPS4|89781|Hermansky-Pudlak syndrome 4##AL365512|HPS4|89781|Hermansky-Pudlak syndrome 4##NM_152841|HPS4|89781|Hermansky-Pudlak syndrome 4##AK057648|HPS4|89781|Hermansky-Pudlak syndrome 4##AK290211|HPS4|89781|Hermansky-Pudlak syndrome 4	0.0	0.0	
chr3	105556105	105556237	reg1009004.p1	3.868	+	CR749655 TSC_hg19_v1_chr3_-_105421064	-135117	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-470349	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	-470591	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	31636	-	TSC_hg19_v1_chr3_-_106959482 BC036229	1403308	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1403421	+	CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595	0.0	0.0	
chr3	184032035	184032133	reg1016215.p2	3.868	+	TSC_hg19_v1_chr3_+_184017038 AB209843 BC002368 AB385107 BC007897 BT009736 X86446 U12596 CU675853	-14988	+	TSC_hg19_v1_chr3_+_184017028 D78151 NM_002808 AL162014 AK315474 AK297256 BC002997	-15074	+	BC142950 NM_001037324 NM_001100120 NM_001100121 TSC_hg19_v1_chr3_+_183993819 AB011176 AK296541 AF521189 AY359003 AF192531 AF428264 AK293713 BC146830 AB383918	-38216	+	TSC_hg19_v1_chr3_+_184032303 NM_001194946 NM_001194947 NM_198241 NM_198242 NM_198244	195	+	TSC_hg19_v1_chr3_+_184032393 BC065256 AK299763 AK096719 AK128378 BX647812 AL832754 AK226160	281	+	BC010688 TSC_hg19_v1_chr3_+_184032439 BC140892 BC140896	378	+	AB209843|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC002368|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC007897|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BT009736|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##X86446|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##U12596|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##D78151|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##NM_002808|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AL162014|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AK315474|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##AK297256|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC002997|PSMD2|5708|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2##BC142950|ECE2|9718|endothelin converting enzyme 2##NM_001037324|ECE2|9718|endothelin converting enzyme 2##NM_001100120|ECE2|9718|endothelin converting enzyme 2##NM_001100121|ECE2|9718|endothelin converting enzyme 2##AB011176|ECE2|9718|endothelin converting enzyme 2##AK296541|ECE2|9718|endothelin converting enzyme 2##AF521189|ECE2|9718|endothelin converting enzyme 2##AY359003|ECE2|9718|endothelin converting enzyme 2##AF192531|ECE2|9718|endothelin converting enzyme 2##AF428264|ECE2|9718|endothelin converting enzyme 2##AK293713|ECE2|9718|endothelin converting enzyme 2##BC146830|ECE2|9718|endothelin converting enzyme 2##NM_001194946|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_001194947|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_198241|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_198242|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##NM_198244|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##BC065256|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##AK299763|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##AK096719|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##AK128378|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##BX647812|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##AL832754|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##AK226160|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##BC010688|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##BC140892|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1##BC140896|EIF4G1|1981|eukaryotic translation initiation factor 4 gamma, 1	0.995675	0.0	denovo_WM_7:-28:0.492	denovo_WM_7:-29:0.492
chr5	108745048	108745212	reg1004535.p3	3.868	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	-660458	+	AK293376 J03358 NM_005246 AK296874	-661568	+	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	-681150	-	BC030826 AB007898 TSC_hg19_v1_chr5_-_108745619 AK291759 NM_014819	491	-	TSC_hg19_v1_chr5_+_109025072 BC031659	279934	+	TSC_hg19_v1_chr5_+_109025096 BC111062	279967	+	AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AB593118|HP07349|100652853|uncharacterized protein HP07349##BC030826|PJA2|9867|praja ring finger 2##AB007898|PJA2|9867|praja ring finger 2##AK291759|PJA2|9867|praja ring finger 2##NM_014819|PJA2|9867|praja ring finger 2##BC031659|MAN2A1|4124|mannosidase, alpha, class 2A, member 1	0.0	0.0	
chr5	179800266	179800352	reg1013106.p1	3.868	+	AB016789 NM_005110 BC000012 TSC_hg19_v1_chr5_-_179780333 AK022507 AK314551	-19984	-	TSC_hg19_v1_chr5_-_179719061 NM_001135044 NM_002752 NM_139068 NM_139069 NM_139070	-81233	-	TSC_hg19_v1_chr5_-_179718968 AK289638	-81342	-	TSC_hg19_v1_chr5_+_179921385 NM_015455	121084	+	TSC_hg19_v1_chr5_+_179921452 AB033020 BC152469	121149	+	AB590701 AF313458 BC029176 AF086152 AF436839 AY040564 BC072673 NM_052863 AY359064	218193	-	AB016789|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_005110|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##BC000012|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK022507|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##AK314551|GFPT2|9945|glutamine-fructose-6-phosphate transaminase 2##NM_001135044|MAPK9|5601|mitogen-activated protein kinase 9##NM_002752|MAPK9|5601|mitogen-activated protein kinase 9##NM_139068|MAPK9|5601|mitogen-activated protein kinase 9##NM_139069|MAPK9|5601|mitogen-activated protein kinase 9##NM_139070|MAPK9|5601|mitogen-activated protein kinase 9##AK289638|MAPK9|5601|mitogen-activated protein kinase 9##NM_015455|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##AB033020|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##BC152469|CNOT6|57472|CCR4-NOT transcription complex, subunit 6##AF313458|SCGB3A1|92304|secretoglobin, family 3A, member 1##BC029176|SCGB3A1|92304|secretoglobin, family 3A, member 1##AF086152|SCGB3A1|92304|secretoglobin, family 3A, member 1##AF436839|SCGB3A1|92304|secretoglobin, family 3A, member 1##AY040564|SCGB3A1|92304|secretoglobin, family 3A, member 1##BC072673|SCGB3A1|92304|secretoglobin, family 3A, member 1##NM_052863|SCGB3A1|92304|secretoglobin, family 3A, member 1##AY359064|SCGB3A1|92304|secretoglobin, family 3A, member 1	1.993065	0.0	denovo_WM_7:75:0.728
chrX	284378	284538	reg1015865.p1	3.868	+	NM_018390 BC064136 BC005028 BC000888 BC032072	-86351	+	None	None	None	None	None	None	AK293506 NM_013239	63231	-	NM_000451 NM_006883 U89331	300620	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	1047126	-	NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2	0.0	0.031862	
chr12	51055293	51055407	reg1012813.p2	3.867	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-156451	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-156595	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-185763	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	102528	+	TSC_hg19_v1_chr12_+_51158275 AK299240	102908	+	NM_182559 BC035123 BC048112 CU690554	181373	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	0.0	0.0	
chr2	20093709	20093834	reg1017019.p1	3.867	+	AK022396 BC068572 TSC_hg19_v1_chr2_+_20068650 AK097927	-25136	+	BC025712 NM_145260 TSC_hg19_v1_chr2_-_19558385 AK074591	-535392	-	AF356185 BC141842 AK302200 BC136387 BC171761 AF417165 BC026076 AK302084 AK057444 AK302795 AK307653 AK097422 AK093464 AX748142 NM_001002006 NM_001199086 NM_001199087 NM_001199088 NM_001199103 NM_001199104 NM_033253	-1322961	-	TSC_hg19_v1_chr2_-_20101456 BC050088	7657	-	CU691276 BC070381 TSC_hg19_v1_chr2_-_20101717 BC057850 NM_001008237	7910	-	AB385451 AK122917 AK315094 BC036659 NM_001006657 NM_020779 AB037757 TSC_hg19_v1_chr2_-_20189911	96072	-	AK022396|FLJ12334|400946|uncharacterized LOC400946##BC068572|FLJ12334|400946|uncharacterized LOC400946##AK097927|FLJ12334|400946|uncharacterized LOC400946##BC025712|OSR1|130497|odd-skipped related 1 (Drosophila)##NM_145260|OSR1|130497|odd-skipped related 1 (Drosophila)##AK074591|OSR1|130497|odd-skipped related 1 (Drosophila)##AF356185|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC141842|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK302200|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC136387|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC171761|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AF417165|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC026076|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK302084|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK057444|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##AK302795|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK307653|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##AK097422|NT5C1B|93034|5'-nucleotidase, cytosolic IB##AK093464|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001002006|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199086|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199087|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199088|NT5C1B|93034|5'-nucleotidase, cytosolic IB##NM_001199103|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##NM_001199104|NT5C1B-RDH14|100526794|NT5C1B-RDH14 readthrough##NM_033253|NT5C1B|93034|5'-nucleotidase, cytosolic IB##BC070381|TTC32|130502|tetratricopeptide repeat domain 32##BC057850|TTC32|130502|tetratricopeptide repeat domain 32##NM_001008237|TTC32|130502|tetratricopeptide repeat domain 32##AK122917|WDR35|57539|WD repeat domain 35##AK315094|WDR35|57539|WD repeat domain 35##BC036659|WDR35|57539|WD repeat domain 35##NM_001006657|WDR35|57539|WD repeat domain 35##NM_020779|WDR35|57539|WD repeat domain 35##AB037757|WDR35|57539|WD repeat domain 35	0.0	0.0	
chr3	149308682	149308823	reg1011415.p1	3.867	+	TSC_hg19_v1_chr3_+_149192480 AK315464 BC001386 U31449	-116263	+	NM_004617 TSC_hg19_v1_chr3_+_149192430	-116350	+	TSC_hg19_v1_chr3_-_149095520 BC034145 AK130271 NM_014220	-213210	-	AJ299431 TSC_hg19_v1_chr3_-_149375816 BC014052 NM_001168280 NM_015472	66983	-	AK022036 NM_001168278	112307	-	AY542158 CU692308 TSC_hg19_v1_chr3_-_149470246 BC046131	161487	-	AK315464|TM4SF4|7104|transmembrane 4 L six family member 4##BC001386|TM4SF4|7104|transmembrane 4 L six family member 4##U31449|TM4SF4|7104|transmembrane 4 L six family member 4##NM_004617|TM4SF4|7104|transmembrane 4 L six family member 4##BC034145|TM4SF1|4071|transmembrane 4 L six family member 1##AK130271|TM4SF1|4071|transmembrane 4 L six family member 1##NM_014220|TM4SF1|4071|transmembrane 4 L six family member 1##AJ299431|WWTR1|25937|WW domain containing transcription regulator 1##BC014052|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168280|WWTR1|25937|WW domain containing transcription regulator 1##NM_015472|WWTR1|25937|WW domain containing transcription regulator 1##AK022036|WWTR1|25937|WW domain containing transcription regulator 1##NM_001168278|WWTR1|25937|WW domain containing transcription regulator 1##AY542158|COMMD2|51122|COMM domain containing 2##BC046131|COMMD2|51122|COMM domain containing 2	0.999408	0.0	denovo_WM_7:41:0.739
chr4	171257816	171257911	reg1014166.p2	3.867	+	TSC_hg19_v1_chr4_-_171011377 BC031068 AK055952 NM_182662 AK314729	-246449	-	AF481738 NM_016228 TSC_hg19_v1_chr4_-_171011213	-246665	-	AB014526 NM_021647 AK290041 TSC_hg19_v1_chr4_-_170947582	-310358	-	NM_001034845 BC047551 BC144036 BC144037 BC063015	1476781	+	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	2832089	+	BC043556 TSC_hg19_v1_chr4_-_174090314	2832447	-	BC031068|AADAT|51166|aminoadipate aminotransferase##AK055952|AADAT|51166|aminoadipate aminotransferase##NM_182662|AADAT|51166|aminoadipate aminotransferase##AK314729|AADAT|51166|aminoadipate aminotransferase##AF481738|AADAT|51166|aminoadipate aminotransferase##NM_016228|AADAT|51166|aminoadipate aminotransferase##AB014526|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_021647|MFAP3L|9848|microfibrillar-associated protein 3-like##AK290041|MFAP3L|9848|microfibrillar-associated protein 3-like##NM_001034845|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC047551|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##BC063015|GALNTL6|442117|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6##NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)	0.23936	0.0	
chr4	174290986	174291101	reg1000094.p1	3.867	+	BC001063 BC100019 BC021054 TSC_hg19_v1_chr4_-_174255505 BC000903 AK311864 NM_001130688 NM_002129	-35514	-	Z17240 BT019782 BT019783 AB463732 DQ892288 DQ895487 NM_001130689 TSC_hg19_v1_chr4_-_174255014	-36168	-	BC040577 TSC_hg19_v1_chr4_-_174090813	-200236	-	TSC_hg19_v1_chr4_+_174292088 NM_003864 AF055993	1020	+	TSC_hg19_v1_chr4_+_174292104 BC016757	1065	+	AJ224677 NM_007281	29573	-	BC001063|HMGB2|3148|high mobility group box 2##BC100019|HMGB2|3148|high mobility group box 2##BC000903|HMGB2|3148|high mobility group box 2##AK311864|HMGB2|3148|high mobility group box 2##NM_001130688|HMGB2|3148|high mobility group box 2##NM_002129|HMGB2|3148|high mobility group box 2##Z17240|HMGB2|3148|high mobility group box 2##BT019782|HMGB2|3148|high mobility group box 2##BT019783|HMGB2|3148|high mobility group box 2##DQ892288|HMGB2|3148|high mobility group box 2##DQ895487|HMGB2|3148|high mobility group box 2##NM_001130689|HMGB2|3148|high mobility group box 2##NM_003864|SAP30|8819|Sin3A-associated protein, 30kDa##AF055993|SAP30|8819|Sin3A-associated protein, 30kDa##BC016757|SAP30|8819|Sin3A-associated protein, 30kDa##AJ224677|SCRG1|11341|stimulator of chondrogenesis 1##NM_007281|SCRG1|11341|stimulator of chondrogenesis 1	0.0	0.0	
chr6	25280438	25280509	reg1002863.p3	3.867	+	TSC_hg19_v1_chr6_+_25279772 BC140770 FJ009082	-579	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	-815	+	TSC_hg19_v1_chr6_+_25279316 BC040903	-1155	+	TSC_hg19_v1_chr6_-_25571218 Y10205	290785	-	AK289477 NM_006998 BC000336 BC003036 Y16752	371950	+	CU687518 BC062211 NM_170745	446298	-	BC140770|LRRC16A|55604|leucine rich repeat containing 16A##FJ009082|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK289477|SCGN|10590|secretagogin, EF-hand calcium binding protein##NM_006998|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC000336|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC003036|SCGN|10590|secretagogin, EF-hand calcium binding protein##Y16752|SCGN|10590|secretagogin, EF-hand calcium binding protein##BC062211|HIST1H2AA|221613|histone cluster 1, H2aa##NM_170745|HIST1H2AA|221613|histone cluster 1, H2aa	0.0	0.0	
chr12	50469093	50469186	reg1012026.p1	3.866	+	NM_001095 NM_020039 U78180 U78181 BC028722 AK290010	-17578	+	BC024144 AB030251 TSC_hg19_v1_chr12_-_50419242 AK000733 AL136794 BC032754 AK315785 NM_001126103 NM_001126104 NM_013277	-49906	-	NM_001652 U48408	-102520	+	TSC_hg19_v1_chr12_+_50479018 NM_003076 NM_139071 U66617 BC009368	9848	+	TSC_hg19_v1_chr12_+_50479124 AK292700 AK293932 AK130517 AB527887 CU679327 EU447009 BC000063 AF109733	9974	+	AK130162 TSC_hg19_v1_chr12_+_50497790 BC032234 NM_005276 AK295911 L34041 AK312516 DQ890626 DQ893793 CU689308	28672	+	NM_001095|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##NM_020039|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##U78180|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##U78181|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##BC028722|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##AK290010|ACCN2|41|amiloride-sensitive cation channel 2, neuronal##BC024144|RACGAP1|29127|Rac GTPase activating protein 1##AB030251|RACGAP1|29127|Rac GTPase activating protein 1##AK000733|RACGAP1|29127|Rac GTPase activating protein 1##AL136794|RACGAP1|29127|Rac GTPase activating protein 1##BC032754|RACGAP1|29127|Rac GTPase activating protein 1##AK315785|RACGAP1|29127|Rac GTPase activating protein 1##NM_001126103|RACGAP1|29127|Rac GTPase activating protein 1##NM_001126104|RACGAP1|29127|Rac GTPase activating protein 1##NM_013277|RACGAP1|29127|Rac GTPase activating protein 1##NM_001652|AQP6|363|aquaporin 6, kidney specific##U48408|AQP6|363|aquaporin 6, kidney specific##NM_003076|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##NM_139071|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##U66617|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC009368|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK292700|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK293932|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130517|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##EU447009|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##BC000063|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AF109733|SMARCD1|6602|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1##AK130162|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##BC032234|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##NM_005276|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK295911|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##L34041|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##AK312516|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ890626|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)##DQ893793|GPD1|2819|glycerol-3-phosphate dehydrogenase 1 (soluble)	0.0	0.99398	CTCF.p2:0:0.994
chr12	69209120	69209249	reg1017261.p2	3.866	+	EU076746 EU076747 EU076748 EU076749 TSC_hg19_v1_chr12_+_69202803	-6383	+	TSC_hg19_v1_chr12_+_69201980 AK290341	-7192	+	TSC_hg19_v1_chr12_+_69201958 BC009893 BC013887 BC067077 M92424 NM_002392 Z12020	-7273	+	TSC_hg19_v1_chr12_-_69326952 AF368463 AK313180 BC022276 NM_001005502 NM_198320	117778	-	J04970 NM_001874 AK127859	147835	-	NM_007007 TSC_hg19_v1_chr12_+_69633348 AK223568 AK299928	424149	+	EU076746|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076747|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076748|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##EU076749|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AK290341|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##M92424|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##NM_002392|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##Z12020|MDM2|4193|Mdm2 p53 binding protein homolog (mouse)##AF368463|CPM|1368|carboxypeptidase M##AK313180|CPM|1368|carboxypeptidase M##BC022276|CPM|1368|carboxypeptidase M##NM_001005502|CPM|1368|carboxypeptidase M##NM_198320|CPM|1368|carboxypeptidase M##J04970|CPM|1368|carboxypeptidase M##NM_001874|CPM|1368|carboxypeptidase M##AK127859|CPM|1368|carboxypeptidase M##NM_007007|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK223568|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa##AK299928|CPSF6|11052|cleavage and polyadenylation specific factor 6, 68kDa	1.674343	0.0	denovo_WM_7:32:0.619	denovo_WM_7:47:0.622
chr16	10979822	10979938	reg1012735.p1	3.866	+	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	-8768	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-67332	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-142176	+	BC071683 TSC_hg19_v1_chr16_-_11036171	56286	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	56355	-	TSC_hg19_v1_chr16_+_11038420 NM_001243403 NM_015226 BC112897 AB002348 AB385312	58563	+	AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)##NM_001243403|CLEC16A|23274|C-type lectin domain family 16, member A##NM_015226|CLEC16A|23274|C-type lectin domain family 16, member A##BC112897|CLEC16A|23274|C-type lectin domain family 16, member A##AB002348|CLEC16A|23274|C-type lectin domain family 16, member A	0.99716	0.0	denovo_WM_7:42:0.424	denovo_WM_7:43:0.424
chr19	11206937	11207061	reg1013346.p1	3.866	+	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	-6814	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	-6867	+	NM_000527 NM_001195798 NM_001195799 NM_001195800 NM_001195802 NM_001195803 TSC_hg19_v1_chr19_+_11200115	-6922	+	AY456387 TSC_hg19_v1_chr19_-_11266459 AK075287 AK303157 AK303266 BC105037 BC105039 NM_182513	59468	-	AB528156 AY639929 CU687364 NM_015493	98226	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	101259	-	AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##NM_000527|LDLR|3949|low density lipoprotein receptor##NM_001195798|LDLR|3949|low density lipoprotein receptor##NM_001195799|LDLR|3949|low density lipoprotein receptor##NM_001195800|LDLR|3949|low density lipoprotein receptor##NM_001195802|LDLR|3949|low density lipoprotein receptor##NM_001195803|LDLR|3949|low density lipoprotein receptor##AY456387|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK075287|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303157|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303266|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105037|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105039|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_182513|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2	0.363253	0.0	
chr22	40592845	40592956	reg1015232.p1	3.866	+	TSC_hg19_v1_chr22_+_40573938 NM_001162501 NM_015088 AK296590 AK294519 AB029016	-18901	+	TSC_hg19_v1_chr22_+_40441403 BC028626	-151468	+	TSC_hg19_v1_chr22_+_40440774 NM_001024843	-151991	+	TSC_hg19_v1_chr22_+_40742532 NM_000026 NM_001123378 AF067853 AF067854 AK293722 CR456368 AK298187 AK291091 AK300705 BC000253 BC018881 AK225042 CU674104 AB462938 CU012935 CU013223 DQ893326 DQ896642 X65867 S60710	149632	+	TSC_hg19_v1_chr22_+_40766609 NM_015705 AK309400	173689	+	TSC_hg19_v1_chr22_+_40766619 AK295469	173719	+	NM_001162501|TNRC6B|23112|trinucleotide repeat containing 6B##NM_015088|TNRC6B|23112|trinucleotide repeat containing 6B##AK296590|TNRC6B|23112|trinucleotide repeat containing 6B##AK294519|TNRC6B|23112|trinucleotide repeat containing 6B##AB029016|TNRC6B|23112|trinucleotide repeat containing 6B##BC028626|TNRC6B|23112|trinucleotide repeat containing 6B##NM_001024843|TNRC6B|23112|trinucleotide repeat containing 6B##NM_000026|ADSL|158|adenylosuccinate lyase##NM_001123378|ADSL|158|adenylosuccinate lyase##AF067853|ADSL|158|adenylosuccinate lyase##AF067854|ADSL|158|adenylosuccinate lyase##CR456368|ADSL|158|adenylosuccinate lyase##AK298187|ADSL|158|adenylosuccinate lyase##AK291091|ADSL|158|adenylosuccinate lyase##AK300705|ADSL|158|adenylosuccinate lyase##BC000253|ADSL|158|adenylosuccinate lyase##BC018881|ADSL|158|adenylosuccinate lyase##AK225042|ADSL|158|adenylosuccinate lyase##CU012935|ADSL|158|adenylosuccinate lyase##CU013223|ADSL|158|adenylosuccinate lyase##DQ893326|ADSL|158|adenylosuccinate lyase##DQ896642|ADSL|158|adenylosuccinate lyase##X65867|ADSL|158|adenylosuccinate lyase##S60710|ADSL|158|adenylosuccinate lyase##NM_015705|SGSM3|27352|small G protein signaling modulator 3##AK309400|SGSM3|27352|small G protein signaling modulator 3##AK295469|SGSM3|27352|small G protein signaling modulator 3	0.0	0.0	
chr2	80163610	80163752	reg1018382.p2	3.866	+	TSC_hg19_v1_chr2_+_79740175 AK295181	-423466	+	NM_001164883 NM_004389 BC052996 TSC_hg19_v1_chr2_+_79740147 BC040458	-423573	+	AK291973 AK311523 AK311523 AK311526 NM_138938 NM_002580 NM_138937	-776803	-	AB587576 AY182024 HQ257885 TSC_hg19_v1_chr2_-_80530981	367282	-	BC045113 NM_178839 AK056644 TSC_hg19_v1_chr2_-_80531561	367844	-	TSC_hg19_v1_chr2_-_80531719 AK290512	368044	-	AK295181|CTNNA2|1496|catenin (cadherin-associated protein), alpha 2##NM_001164883|CTNNA2|1496|catenin (cadherin-associated protein), alpha 2##NM_004389|CTNNA2|1496|catenin (cadherin-associated protein), alpha 2##BC052996|CTNNA2|1496|catenin (cadherin-associated protein), alpha 2##BC040458|CTNNA2|1496|catenin (cadherin-associated protein), alpha 2##AK291973|REG3A|5068|regenerating islet-derived 3 alpha##AK311523|REG3A|5068|regenerating islet-derived 3 alpha##AK311523|REG3A|5068|regenerating islet-derived 3 alpha##AK311526|REG3A|5068|regenerating islet-derived 3 alpha##NM_138938|REG3A|5068|regenerating islet-derived 3 alpha##NM_002580|REG3A|5068|regenerating islet-derived 3 alpha##NM_138937|REG3A|5068|regenerating islet-derived 3 alpha##AY182024|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##HQ257885|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##BC045113|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##NM_178839|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK056644|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1##AK290512|LRRTM1|347730|leucine rich repeat transmembrane neuronal 1	0.993081	0.963551	denovo_WM_7:-1:0.614	denovo_WM_7:-3:0.219	CTCF.p2:-40:0.964
chr3	12686865	12686942	reg1012997.p2	3.866	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-88323	+	NM_001195279	-99941	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-160667	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	18564	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	18712	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	18771	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.729031	0.0	denovo_WM_7:-7:0.729
chr7	104950063	104950149	reg1018033.p1	3.866	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-40623	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-197728	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-268692	+	TSC_hg19_v1_chr7_-_105029265 AB489157	79159	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	79236	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	212555	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.0	0.0	
chr7	43412715	43412855	reg1015146.p1	3.866	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-260559	+	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	-440816	+	AK290654 TSC_hg19_v1_chr7_-_42971781 NM_002787	-440984	-	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	209909	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	356309	-	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	385482	+	AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32##AK290654|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##NM_002787|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A	0.984979	0.0	
chr8	145264555	145264664	reg1001438.p1	3.866	+	AK295740 NM_001099280 NM_001099281 NM_032450 AK093563 AX748203 BC057824 BC067855 BC092486	-61681	+	BC003035 BC009915 NM_016458 AK098226 BC015471	-71914	+	TSC_hg19_v1_chr8_+_145159398 BC031273 BC018714 BC014082 AL136937	-105196	+	AX721087 NM_001008271 NM_001080514	56880	+	BC003035 BC009915 NM_016458 AK098226 BC015471	173294	+	AX721087 NM_001008271 NM_001080514	225966	+	AK295740|HEATR7A|727957|HEAT repeat containing 7A##NM_001099280|HEATR7A|727957|HEAT repeat containing 7A##NM_001099281|HEATR7A|727957|HEAT repeat containing 7A##NM_032450|HEATR7A|727957|HEAT repeat containing 7A##AK093563|HEATR7A|727957|HEAT repeat containing 7A##BC057824|HEATR7A|727957|HEAT repeat containing 7A##BC067855|HEATR7A|727957|HEAT repeat containing 7A##BC092486|HEATR7A|727957|HEAT repeat containing 7A##BC003035|FAM203A|51236|family with sequence similarity 203, member A##BC009915|FAM203A|51236|family with sequence similarity 203, member A##NM_016458|FAM203A|51236|family with sequence similarity 203, member A##AK098226|FAM203A|51236|family with sequence similarity 203, member A##BC015471|FAM203A|51236|family with sequence similarity 203, member A##BC031273|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC018714|MAF1|84232|MAF1 homolog (S. cerevisiae)##BC014082|MAF1|84232|MAF1 homolog (S. cerevisiae)##AL136937|MAF1|84232|MAF1 homolog (S. cerevisiae)##NM_001008271|SCXA|100129885|scleraxis homolog A (mouse)##NM_001080514|SCXB|642658|scleraxis homolog B (mouse)##BC003035|FAM203A|51236|family with sequence similarity 203, member A##BC009915|FAM203A|51236|family with sequence similarity 203, member A##NM_016458|FAM203A|51236|family with sequence similarity 203, member A##AK098226|FAM203A|51236|family with sequence similarity 203, member A##BC015471|FAM203A|51236|family with sequence similarity 203, member A##NM_001008271|SCXA|100129885|scleraxis homolog A (mouse)##NM_001080514|SCXB|642658|scleraxis homolog B (mouse)	0.811426	0.0	denovo_WM_7:47:0.800
chr9	15533388	15533510	reg1015119.p1	3.866	+	TSC_hg19_v1_chr9_-_15510969 BC040032 BC013160 AF432220 BC064135 AF063020 BC022971 BC033817 BC044568 NM_001128217 NM_033222	-22489	-	AF098483 AF098482 NM_021144	-23202	-	TSC_hg19_v1_chr9_+_15422877 AB527501 EU446705 BC014985	-110537	+	AK308284 TSC_hg19_v1_chr9_+_15553040 BX537933 CR936775 AY422473 NM_173550	19572	+	TSC_hg19_v1_chr9_-_16727889 AY438376	1194448	-	DQ884938 DQ884939 DQ884940 DQ884941 TSC_hg19_v1_chr9_-_16870669 AK131398	1337218	-	BC040032|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC013160|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF432220|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC064135|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF063020|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC022971|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC033817|PSIP1|11168|PC4 and SFRS1 interacting protein 1##BC044568|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_001128217|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_033222|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098483|PSIP1|11168|PC4 and SFRS1 interacting protein 1##AF098482|PSIP1|11168|PC4 and SFRS1 interacting protein 1##NM_021144|PSIP1|11168|PC4 and SFRS1 interacting protein 1##EU446705|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##BC014985|SNAPC3|6619|small nuclear RNA activating complex, polypeptide 3, 50kDa##AK308284|C9orf93|203238|chromosome 9 open reading frame 93##BX537933|C9orf93|203238|chromosome 9 open reading frame 93##CR936775|C9orf93|203238|chromosome 9 open reading frame 93##AY422473|C9orf93|203238|chromosome 9 open reading frame 93##NM_173550|C9orf93|203238|chromosome 9 open reading frame 93##AY438376|BNC2|54796|basonuclin 2##DQ884938|BNC2|54796|basonuclin 2##DQ884939|BNC2|54796|basonuclin 2##DQ884940|BNC2|54796|basonuclin 2##DQ884941|BNC2|54796|basonuclin 2##AK131398|BNC2|54796|basonuclin 2	0.0	0.043667	
chr18	20719421	20719525	reg1012405.p1	3.865	+	EF028204 NM_001100619	-3747	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-205658	+	TSC_hg19_v1_chr18_+_20513319 NM_002894 U72066 AK292481	-206125	+	BC037218 NM_138375	16315	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	298398	-	AK057292 NM_003831	313313	+	EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##NM_002894|RBBP8|5932|retinoblastoma binding protein 8##U72066|RBBP8|5932|retinoblastoma binding protein 8##AK292481|RBBP8|5932|retinoblastoma binding protein 8##BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)	0.996443	0.0	
chr19	10538571	10538751	reg1009967.p1	3.865	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	-7431	+	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	-11158	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-24405	-	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	2766	+	AF073745 NM_001111309	4449	+	TSC_hg19_v1_chr19_+_10563605 BC038234 NM_006202 BC019864	25007	+	L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AF073745|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111309|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC038234|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_006202|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##BC019864|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.992157	0.0	
chr6	88884680	88884800	reg1014067.p1	3.865	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-8974	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-29704	-	BC029488 NM_030960 AF203447	-127210	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	788451	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	788568	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	788607	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.9996	0.0	
chr10	25218120	25218300	reg1015779.p2	3.864	+	AF480466 NM_020824 TSC_hg19_v1_chr10_-_25012632	-205604	-	AK307604 TSC_hg19_v1_chr10_-_25012174	-206037	-	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	-462741	+	AB464023 CU679021 TSC_hg19_v1_chr10_-_25241536 AF226056 AB209792 AK222674 AK294130 AK304055 AK021950 NM_020200 BC008662 AK309614	23322	-	CU693144 DQ892076 DQ895269 BC064597 AK095021 NM_145010 AY454125 AK292495 BC026165	86764	-	NM_024838 TSC_hg19_v1_chr10_+_25305540 AK125249 BC035132 BX647989	87340	+	AF480466|ARHGAP21|57584|Rho GTPase activating protein 21##NM_020824|ARHGAP21|57584|Rho GTPase activating protein 21##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AF226056|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AB209792|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK222674|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK294130|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK021950|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##NM_020200|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##BC008662|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##AK309614|PRTFDC1|56952|phosphoribosyl transferase domain containing 1##DQ892076|ENKUR|219670|enkurin, TRPC channel interacting protein##DQ895269|ENKUR|219670|enkurin, TRPC channel interacting protein##AK095021|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_145010|ENKUR|219670|enkurin, TRPC channel interacting protein##AY454125|ENKUR|219670|enkurin, TRPC channel interacting protein##AK292495|ENKUR|219670|enkurin, TRPC channel interacting protein##BC026165|ENKUR|219670|enkurin, TRPC channel interacting protein##NM_024838|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##AK125249|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BC035132|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)##BX647989|THNSL1|79896|threonine synthase-like 1 (S. cerevisiae)	0.0	0.0	
chr1	36011970	36012052	reg1019535.p1	3.864	+	TSC_hg19_v1_chr1_-_35920081 AK090878	-91853	-	BX648067 TSC_hg19_v1_chr1_+_35851133	-160894	+	TSC_hg19_v1_chr1_+_35734624 BC127113 BC127114 AB587559	-277383	+	TSC_hg19_v1_chr1_-_36022989 BC014530 AF275679 AK314605 AY163234	10958	-	AK316252 TSC_hg19_v1_chr1_-_36023002	10992	-	TSC_hg19_v1_chr1_-_36023005 NM_024874	11020	-	AK090878|KIAA0319L|79932|KIAA0319-like##BX648067|ZMYM4|9202|zinc finger, MYM-type 4##BC127113|ZMYM4|9202|zinc finger, MYM-type 4##BC127114|ZMYM4|9202|zinc finger, MYM-type 4##BC014530|KIAA0319L|79932|KIAA0319-like##AF275679|KIAA0319L|79932|KIAA0319-like##AK314605|KIAA0319L|79932|KIAA0319-like##AY163234|KIAA0319L|79932|KIAA0319-like##AK316252|KIAA0319L|79932|KIAA0319-like##NM_024874|KIAA0319L|79932|KIAA0319-like	0.0	0.0	
chr16	86609757	86609881	reg1016560.p2	3.864	+	BC113437 BC113439 NM_005251	-8963	+	TSC_hg19_v1_chr16_-_86588803 AK023955 BC112057 BC112059 BC143702 BC143703 BC143704 BC143705 BC143707 NM_001159380 AK023060 AK096836 AK297726 NM_001159377 NM_001159378 NM_001159379 NM_022764	-21047	-	TSC_hg19_v1_chr16_+_86544238 AB464530 EU832158 EU832252	-65579	+	BC100027 NM_005250	2295	+	TSC_hg19_v1_chr16_-_87350760 AB528835 AM392822 AM393070	740981	-	TSC_hg19_v1_chr16_-_87350999 BC015536 AK026130 NM_001195124 NM_001195125	741167	-	BC113437|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##BC113439|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##NM_005251|FOXC2|2303|forkhead box C2 (MFH-1, mesenchyme forkhead 1)##AK023955|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC112057|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC112059|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143702|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143703|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143704|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143705|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##BC143707|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159380|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK023060|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK096836|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##AK297726|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159377|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159378|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_001159379|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##NM_022764|MTHFSD|64779|methenyltetrahydrofolate synthetase domain containing##EU832158|FOXF1|2294|forkhead box F1##EU832252|FOXF1|2294|forkhead box F1##BC100027|FOXL1|2300|forkhead box L1##NM_005250|FOXL1|2300|forkhead box L1##AM392822|C16orf95|100506581|chromosome 16 open reading frame 95##AM393070|C16orf95|100506581|chromosome 16 open reading frame 95##BC015536|C16orf95|100506581|chromosome 16 open reading frame 95##AK026130|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195124|C16orf95|100506581|chromosome 16 open reading frame 95##NM_001195125|C16orf95|100506581|chromosome 16 open reading frame 95	1.832539	0.0	denovo_WM_7:-56:0.312	denovo_WM_7:-57:0.483
chr17	8846444	8846605	reg1012887.p2	3.864	+	AY725853 AF128881 NM_014308	-30708	-	BC110301 TSC_hg19_v1_chr17_-_8770992 AK091819 AX747201 NM_001010855	-75540	-	CU691888 BC040487 AK093092 AX747916 AY129026 NM_152599	-143972	-	AY725851 AY725852 AY725854 TSC_hg19_v1_chr17_-_8869025 BC028212 AK129627 AK314186 AK309074 NM_001142633 NM_001251851 NM_001251852 NM_001251853 NM_001251855	22457	-	TSC_hg19_v1_chr17_+_8924904 NM_004822 U75586	78443	+	AB590194 BT007319 DQ890985 DQ894161 CU679457 TSC_hg19_v1_chr17_-_9479138	632607	-	AY725853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AF128881|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_014308|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC110301|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##AK091819|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##NM_001010855|PIK3R6|146850|phosphoinositide-3-kinase, regulatory subunit 6##BC040487|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AK093092|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY129026|MFSD6L|162387|major facilitator superfamily domain containing 6-like##NM_152599|MFSD6L|162387|major facilitator superfamily domain containing 6-like##AY725851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AY725854|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##BC028212|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK129627|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK314186|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##AK309074|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001142633|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251851|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251852|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251853|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_001251855|PIK3R5|23533|phosphoinositide-3-kinase, regulatory subunit 5##NM_004822|NTN1|9423|netrin 1##U75586|NTN1|9423|netrin 1##BT007319|STX8|9482|syntaxin 8##DQ890985|STX8|9482|syntaxin 8##DQ894161|STX8|9482|syntaxin 8	0.04653	0.0	
chr19	42891737	42891846	reg1016527.p2	3.864	+	AB011541 BC153880 NM_001410 TSC_hg19_v1_chr19_+_42829786	-62005	+	TSC_hg19_v1_chr19_+_42817516 NM_173633 AK075286	-74262	+	NM_001145939 TSC_hg19_v1_chr19_-_42806944 NM_001145940	-84850	-	BC101197 BC101198 AB049591 AK312080 NM_032488	2640	-	TSC_hg19_v1_chr19_+_42901325 AK311181	9521	+	TSC_hg19_v1_chr19_-_42928157 BC029301	36422	-	AB011541|MEGF8|1954|multiple EGF-like-domains 8##BC153880|MEGF8|1954|multiple EGF-like-domains 8##NM_001410|MEGF8|1954|multiple EGF-like-domains 8##NM_173633|TMEM145|284339|transmembrane protein 145##AK075286|TMEM145|284339|transmembrane protein 145##NM_001145939|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##NM_001145940|PAFAH1B3|5050|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)##BC101197|CNFN|84518|cornifelin##BC101198|CNFN|84518|cornifelin##AB049591|CNFN|84518|cornifelin##AK312080|CNFN|84518|cornifelin##NM_032488|CNFN|84518|cornifelin##BC029301|LIPE|3991|lipase, hormone-sensitive	1.997499	0.0	denovo_WM_7:21:0.272	denovo_WM_7:27:0.352	denovo_WM_7:43:0.726
chr3	119045953	119046084	reg1015484.p1	3.864	+	TSC_hg19_v1_chr3_+_119013513 AK293726 BC112163 BC112165 AB384581 HQ258543	-32398	+	TSC_hg19_v1_chr3_+_119013229 AB033030 NM_020754	-32787	+	TSC_hg19_v1_chr3_-_118959726 AK001006 AK301688 AK314425 BX647468 CR749555 NM_003778 NM_212543	-86281	-	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	136451	-	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	141807	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	171455	+	AK293726|ARHGAP31|57514|Rho GTPase activating protein 31##BC112163|ARHGAP31|57514|Rho GTPase activating protein 31##BC112165|ARHGAP31|57514|Rho GTPase activating protein 31##HQ258543|ARHGAP31|57514|Rho GTPase activating protein 31##AB033030|ARHGAP31|57514|Rho GTPase activating protein 31##NM_020754|ARHGAP31|57514|Rho GTPase activating protein 31##AK001006|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK301688|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK314425|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BX647468|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##CR749555|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_003778|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_212543|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1	0.0	0.0	
chr5	71594544	71594641	reg1011996.p2	3.864	+	TSC_hg19_v1_chr5_+_71502701 AK125194	-91829	+	TSC_hg19_v1_chr5_+_71403301 BC017240 NM_005909 BC025240 BC139918 BC150196 BC046114 AK096273 AK308147 BX647077 BC039822 BC108733 BC032516 BC073993 BC056145 BC063669 BC094834 AB463119	-191313	+	NM_004291 BC029882 U16826 CR542216 CU688778 EU831800 EU831877	-579538	+	CU687962 D87453 TSC_hg19_v1_chr5_-_71616067 BC064902 BC011818 AK299412 AK025417 AK309065	21466	-	TSC_hg19_v1_chr5_-_71616075 AK300111 NM_015084	21488	-	AK303776 TSC_hg19_v1_chr5_+_71616202 AK056761 NM_024754 AK298750	21610	+	AK125194|MAP1B|4131|microtubule-associated protein 1B##BC017240|MAP1B|4131|microtubule-associated protein 1B##NM_005909|MAP1B|4131|microtubule-associated protein 1B##BC025240|MAP1B|4131|microtubule-associated protein 1B##BC139918|MAP1B|4131|microtubule-associated protein 1B##BC150196|MAP1B|4131|microtubule-associated protein 1B##BC046114|MAP1B|4131|microtubule-associated protein 1B##AK096273|MAP1B|4131|microtubule-associated protein 1B##AK308147|MAP1B|4131|microtubule-associated protein 1B##BX647077|MAP1B|4131|microtubule-associated protein 1B##BC039822|MAP1B|4131|microtubule-associated protein 1B##BC108733|MAP1B|4131|microtubule-associated protein 1B##BC032516|MAP1B|4131|microtubule-associated protein 1B##BC073993|MAP1B|4131|microtubule-associated protein 1B##BC056145|MAP1B|4131|microtubule-associated protein 1B##BC063669|MAP1B|4131|microtubule-associated protein 1B##BC094834|MAP1B|4131|microtubule-associated protein 1B##NM_004291|CARTPT|9607|CART prepropeptide##BC029882|CARTPT|9607|CART prepropeptide##U16826|CARTPT|9607|CART prepropeptide##CR542216|CARTPT|9607|CART prepropeptide##EU831800|CARTPT|9607|CART prepropeptide##EU831877|CARTPT|9607|CART prepropeptide##D87453|MRPS27|23107|mitochondrial ribosomal protein S27##BC064902|MRPS27|23107|mitochondrial ribosomal protein S27##BC011818|MRPS27|23107|mitochondrial ribosomal protein S27##AK299412|MRPS27|23107|mitochondrial ribosomal protein S27##AK025417|MRPS27|23107|mitochondrial ribosomal protein S27##AK309065|MRPS27|23107|mitochondrial ribosomal protein S27##AK300111|MRPS27|23107|mitochondrial ribosomal protein S27##NM_015084|MRPS27|23107|mitochondrial ribosomal protein S27##AK303776|PTCD2|79810|pentatricopeptide repeat domain 2##AK056761|PTCD2|79810|pentatricopeptide repeat domain 2##NM_024754|PTCD2|79810|pentatricopeptide repeat domain 2##AK298750|PTCD2|79810|pentatricopeptide repeat domain 2	1.376927	0.0	denovo_WM_7:-31:0.206
chr7	141232939	141233056	reg1009839.p1	3.864	+	NM_001195278	-458966	+	NM_053035 TSC_hg19_v1_chr7_-_140714792	-518211	-	TSC_hg19_v1_chr7_-_140714748 AF078858 BC105793	-518247	-	NM_018238 TSC_hg19_v1_chr7_+_141251215 AK304502 AK001704 AK299131 AK222769 AJ278150 BC009775	18160	+	TSC_hg19_v1_chr7_-_141401967 AB032973 NM_001080392 AB384573	168937	-	AK131218 NM_001105558	175155	+	NM_001195278|LOC100507421|100507421|transmembrane protein 178-like##NM_053035|MRPS33|51650|mitochondrial ribosomal protein S33##AF078858|MRPS33|51650|mitochondrial ribosomal protein S33##BC105793|MRPS33|51650|mitochondrial ribosomal protein S33##NM_018238|AGK|55750|acylglycerol kinase##AK304502|AGK|55750|acylglycerol kinase##AK001704|AGK|55750|acylglycerol kinase##AK299131|AGK|55750|acylglycerol kinase##AK222769|AGK|55750|acylglycerol kinase##AJ278150|AGK|55750|acylglycerol kinase##BC009775|AGK|55750|acylglycerol kinase##AB032973|KIAA1147|57189|KIAA1147##NM_001080392|KIAA1147|57189|KIAA1147##AK131218|WEE2|494551|WEE1 homolog 2 (S. pombe)##NM_001105558|WEE2|494551|WEE1 homolog 2 (S. pombe)	2.992315	0.0	denovo_WM_7:-33:0.385	denovo_WM_7:-34:0.257	denovo_WM_7:-49:0.224	denovo_WM_7:-50:0.245	denovo_WM_7:-51:0.215	denovo_WM_7:-66:0.280	denovo_WM_7:-67:0.413
chr7	43718858	43718960	reg1013446.p1	3.864	+	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	-96215	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-566683	+	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	-746940	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	50185	-	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	79358	+	TSC_hg19_v1_chr7_+_43798283 AK291862 X93086 U34877	79407	+	NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32##BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A##AK291862|BLVRA|644|biliverdin reductase A##X93086|BLVRA|644|biliverdin reductase A##U34877|BLVRA|644|biliverdin reductase A	1.352774	0.0	denovo_WM_7:12:0.356
chr7	7606271	7606408	reg1013387.p2	3.864	+	BC136892 BC144431 AJ890451 NM_001037763	-30885	-	TSC_hg19_v1_chr7_+_7222291 NM_020156 AK309328	-384092	+	TSC_hg19_v1_chr7_-_6865896 BC010130 AK292326 BC132749 BC132751 BC067810 NM_198097	-740441	-	TSC_hg19_v1_chr7_+_7606553 NM_019005 BC068512	249	+	TSC_hg19_v1_chr7_+_7606667 AK294561	347	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	73748	-	BC136892|COL28A1|340267|collagen, type XXVIII, alpha 1##BC144431|COL28A1|340267|collagen, type XXVIII, alpha 1##AJ890451|COL28A1|340267|collagen, type XXVIII, alpha 1##NM_001037763|COL28A1|340267|collagen, type XXVIII, alpha 1##NM_020156|C1GALT1|56913|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1##BC010130|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##AK292326|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##BC132749|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##BC132751|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##BC067810|CCZ1|51622|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)##NM_198097|CCZ1B|221960|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)##NM_019005|MIOS|54468|missing oocyte, meiosis regulator, homolog (Drosophila)##BC068512|MIOS|54468|missing oocyte, meiosis regulator, homolog (Drosophila)##AK294561|MIOS|54468|missing oocyte, meiosis regulator, homolog (Drosophila)##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa	0.973288	0.0	denovo_WM_7:-70:0.633	denovo_WM_7:-72:0.241
chr9	95274394	95274460	reg1014703.p2	3.864	+	TSC_hg19_v1_chr9_-_95244789 AK308107 AY029191 AY358329 BC022059 BC063114 NM_001193335 NM_017680	-29631	-	AK027359 AK304501 TSC_hg19_v1_chr9_-_95244656 AK172737	-29780	-	AB000114 AK313055 AK225922 AY358872 BC046356 NM_005014	-87730	-	AB011792 AK303922 AK312820 AK296458 BX537976 NM_001197295 NM_001197296 NM_001393	23885	-	AF520811 TSC_hg19_v1_chr9_-_95432355 AK023225 AF351202	157886	-	TSC_hg19_v1_chr9_-_95432542 BC026154 NM_022755	158130	-	AK308107|ASPN|54829|asporin##AY029191|ASPN|54829|asporin##AY358329|ASPN|54829|asporin##BC022059|ASPN|54829|asporin##BC063114|ASPN|54829|asporin##NM_001193335|ASPN|54829|asporin##NM_017680|ASPN|54829|asporin##AK027359|ASPN|54829|asporin##AK304501|ASPN|54829|asporin##AK172737|ASPN|54829|asporin##AB000114|OMD|4958|osteomodulin##AK313055|OMD|4958|osteomodulin##AK225922|OMD|4958|osteomodulin##AY358872|OMD|4958|osteomodulin##BC046356|OMD|4958|osteomodulin##NM_005014|OMD|4958|osteomodulin##AB011792|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AK303922|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AK312820|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AK296458|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##BX537976|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##NM_001197295|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##NM_001197296|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##NM_001393|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AF520811|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##AK023225|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##AF351202|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##BC026154|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##NM_022755|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	0.0	0.0	
chr14	74551197	74551275	reg1006963.p1	3.863	+	TSC_hg19_v1_chr14_-_74551167 BC032371 NM_005589	-47	-	AF038011 TSC_hg19_v1_chr14_-_74551122 AF159889 CU678802 DQ892921 DQ893680 EU176729 AK223244 AJ249994 BC004909 AK222687 AF148505 AK312389 AK294243 AK311478	-121	-	TSC_hg19_v1_chr14_+_74486065 NM_025057 BC044808	-65151	+	NM_001024674 AK307062 TSC_hg19_v1_chr14_+_74551662 AK055422 AK023979 BC009539	432	+	AY336059 NM_182894 BC128153	154960	+	BT007412 CR457104 DQ892847 DQ896094 BC012815 TSC_hg19_v1_chr14_-_74769638 AK291332 AK308382 AF009746 AK297934 BX247984 BX248053 NM_005050	218454	-	BC032371|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_005589|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF038011|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF159889|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ892921|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##DQ893680|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##EU176729|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK223244|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AJ249994|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##BC004909|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK222687|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AF148505|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK312389|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK294243|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##AK311478|ALDH6A1|4329|aldehyde dehydrogenase 6 family, member A1##NM_025057|C14orf45|80127|chromosome 14 open reading frame 45##BC044808|C14orf45|80127|chromosome 14 open reading frame 45##NM_001024674|LIN52|91750|lin-52 homolog (C. elegans)##AK307062|LIN52|91750|lin-52 homolog (C. elegans)##AK055422|LIN52|91750|lin-52 homolog (C. elegans)##AK023979|LIN52|91750|lin-52 homolog (C. elegans)##BC009539|LIN52|91750|lin-52 homolog (C. elegans)##AY336059|VSX2|338917|visual system homeobox 2##NM_182894|VSX2|338917|visual system homeobox 2##BC128153|VSX2|338917|visual system homeobox 2##BT007412|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##CR457104|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ892847|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##DQ896094|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BC012815|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK291332|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK308382|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AF009746|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##AK297934|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX247984|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##BX248053|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4##NM_005050|ABCD4|5826|ATP-binding cassette, sub-family D (ALD), member 4	0.0	0.0	
chr16	31054579	31054651	reg1017346.p1	3.863	+	TSC_hg19_v1_chr16_+_31044881 AK296652 BC002436 NM_004604	-9722	+	TSC_hg19_v1_chr16_+_31044856 AK315716	-9760	+	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	-10199	+	AK308239 NM_001172669 NM_001172670	21793	-	NM_001172668	30207	-	TSC_hg19_v1_chr16_-_31085074 AK315623 AK027398	30520	-	AK296652|STX4|6810|syntaxin 4##BC002436|STX4|6810|syntaxin 4##NM_004604|STX4|6810|syntaxin 4##AK315716|STX4|6810|syntaxin 4##AK091833|STX4|6810|syntaxin 4##AK308239|ZNF668|79759|zinc finger protein 668##NM_001172669|ZNF668|79759|zinc finger protein 668##NM_001172670|ZNF668|79759|zinc finger protein 668##NM_001172668|ZNF668|79759|zinc finger protein 668##AK315623|ZNF668|79759|zinc finger protein 668##AK027398|ZNF668|79759|zinc finger protein 668	0.0	0.0	
chr1	90831337	90831505	reg1013573.p1	3.863	+	TSC_hg19_v1_chr1_+_90460726 NM_182975 NM_182976 BC052645 BC061521 BC038454 BC090866 AK000410 BC053888 BC014899 BC070341 BC013102 AK303707 AK297073	-370705	+	BC009486 TSC_hg19_v1_chr1_+_90287584	-543857	+	TSC_hg19_v1_chr1_+_90287497 NM_018103 BC024159	-543963	+	BC126439 BC126441 AY338397 NM_020063	351364	-	BC050656 TSC_hg19_v1_chr1_-_91487020 AK024026 NM_016620	655617	-	TSC_hg19_v1_chr1_-_91487583 BC041138 AK291520	656142	-	NM_182975|ZNF326|284695|zinc finger protein 326##NM_182976|ZNF326|284695|zinc finger protein 326##BC052645|ZNF326|284695|zinc finger protein 326##BC061521|ZNF326|284695|zinc finger protein 326##BC038454|ZNF326|284695|zinc finger protein 326##BC090866|ZNF326|284695|zinc finger protein 326##AK000410|ZNF326|284695|zinc finger protein 326##BC053888|ZNF326|284695|zinc finger protein 326##BC014899|ZNF326|284695|zinc finger protein 326##BC070341|ZNF326|284695|zinc finger protein 326##BC013102|ZNF326|284695|zinc finger protein 326##AK303707|ZNF326|284695|zinc finger protein 326##AK297073|ZNF326|284695|zinc finger protein 326##BC009486|LRRC8D|55144|leucine rich repeat containing 8 family, member D##NM_018103|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC024159|LRRC8D|55144|leucine rich repeat containing 8 family, member D##BC126439|BARHL2|343472|BarH-like homeobox 2##BC126441|BARHL2|343472|BarH-like homeobox 2##AY338397|BARHL2|343472|BarH-like homeobox 2##NM_020063|BARHL2|343472|BarH-like homeobox 2##BC050656|ZNF644|84146|zinc finger protein 644##AK024026|ZNF644|84146|zinc finger protein 644##NM_016620|ZNF644|84146|zinc finger protein 644##BC041138|ZNF644|84146|zinc finger protein 644##AK291520|ZNF644|84146|zinc finger protein 644	0.998432	0.0	denovo_WM_7:0:0.229	denovo_WM_7:-1:0.229	denovo_WM_7:-2:0.229	denovo_WM_7:-3:0.229
chr22	39092239	39092357	reg1015190.p1	3.863	+	AK312076 TSC_hg19_v1_chr22_+_39077979 CU013025 CU013313 DQ893045 DQ896289	-14317	+	TSC_hg19_v1_chr22_+_39077977 BC009363 CR456475	-14322	+	AK024731 TSC_hg19_v1_chr22_+_39077961 AB041906 AF163256 AB040119	-14331	+	CR456923 CU677177 CU013023 CU013311 CR456473 AK291827 BC015026 D31884 TSC_hg19_v1_chr22_-_39096285 NM_014876	3926	-	NM_004286 TSC_hg19_v1_chr22_+_39101925	9567	+	TSC_hg19_v1_chr22_+_39101984 EU831484 EU831571 BC014075 AB385030 CR456501 CU013098 CU013386 U87964	9729	+	AK312076|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013025|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CU013313|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ893045|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##DQ896289|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##BC009363|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CR456475|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##AK024731|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##AB041906|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##AF163256|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##AB040119|TOMM22|56993|translocase of outer mitochondrial membrane 22 homolog (yeast)##CR456923|JOSD1|9929|Josephin domain containing 1##CU013023|JOSD1|9929|Josephin domain containing 1##CU013311|JOSD1|9929|Josephin domain containing 1##CR456473|JOSD1|9929|Josephin domain containing 1##AK291827|JOSD1|9929|Josephin domain containing 1##BC015026|JOSD1|9929|Josephin domain containing 1##D31884|JOSD1|9929|Josephin domain containing 1##NM_014876|JOSD1|9929|Josephin domain containing 1##NM_004286|GTPBP1|9567|GTP binding protein 1##EU831484|GTPBP1|9567|GTP binding protein 1##EU831571|GTPBP1|9567|GTP binding protein 1##BC014075|GTPBP1|9567|GTP binding protein 1##CR456501|GTPBP1|9567|GTP binding protein 1##CU013098|GTPBP1|9567|GTP binding protein 1##CU013386|GTPBP1|9567|GTP binding protein 1##U87964|GTPBP1|9567|GTP binding protein 1	0.134019	0.0	
chr4	19226656	19226741	reg1012499.p1	3.863	+	AK096181 TSC_hg19_v1_chr4_-_18023379 CU691482 BC037322 AK299939 NM_001166139 NM_153686	-1203232	-	AF331796 NM_022346 TSC_hg19_v1_chr4_+_17812610 AB013299 AK022512 BC068467 AF235023 BC143383 BC101476 CU686641	-1414087	+	TSC_hg19_v1_chr4_-_17812353 AK056116 NM_017741	-1414425	-	AB017168 NM_004787 BC117190 BC143978 AF133270	1028638	+	TSC_hg19_v1_chr4_+_20702080 AK307786 NM_001130727 NM_145048 AK294077 AK297556 AK307355 AK315482 AK291544 AK307092	1475369	+	DQ148492 AK294188 TSC_hg19_v1_chr4_-_20985711	1758931	-	AK096181|LCORL|254251|ligand dependent nuclear receptor corepressor-like##BC037322|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AK299939|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_001166139|LCORL|254251|ligand dependent nuclear receptor corepressor-like##NM_153686|LCORL|254251|ligand dependent nuclear receptor corepressor-like##AF331796|NCAPG|64151|non-SMC condensin I complex, subunit G##NM_022346|NCAPG|64151|non-SMC condensin I complex, subunit G##AB013299|NCAPG|64151|non-SMC condensin I complex, subunit G##AK022512|NCAPG|64151|non-SMC condensin I complex, subunit G##BC068467|NCAPG|64151|non-SMC condensin I complex, subunit G##AF235023|NCAPG|64151|non-SMC condensin I complex, subunit G##BC143383|NCAPG|64151|non-SMC condensin I complex, subunit G##BC101476|NCAPG|64151|non-SMC condensin I complex, subunit G##AK056116|DCAF16|54876|DDB1 and CUL4 associated factor 16##NM_017741|DCAF16|54876|DDB1 and CUL4 associated factor 16##AB017168|SLIT2|9353|slit homolog 2 (Drosophila)##NM_004787|SLIT2|9353|slit homolog 2 (Drosophila)##BC117190|SLIT2|9353|slit homolog 2 (Drosophila)##BC143978|SLIT2|9353|slit homolog 2 (Drosophila)##AF133270|SLIT2|9353|slit homolog 2 (Drosophila)##AK307786|PACRGL|133015|PARK2 co-regulated-like##NM_001130727|PACRGL|133015|PARK2 co-regulated-like##NM_145048|PACRGL|133015|PARK2 co-regulated-like##AK294077|PACRGL|133015|PARK2 co-regulated-like##AK297556|PACRGL|133015|PARK2 co-regulated-like##AK307355|PACRGL|133015|PARK2 co-regulated-like##AK315482|PACRGL|133015|PARK2 co-regulated-like##AK291544|PACRGL|133015|PARK2 co-regulated-like##AK307092|PACRGL|133015|PARK2 co-regulated-like##DQ148492|KCNIP4|80333|Kv channel interacting protein 4##AK294188|KCNIP4|80333|Kv channel interacting protein 4	0.327939	0.978819	denovo_WM_7:5:0.328	CTCF.p2:-52:0.979
chr12	25402952	25403132	reg1009389.p2	3.862	+	AK094491 TSC_hg19_v1_chr12_+_25348215 BC100276 BC071769	-54836	+	TSC_hg19_v1_chr12_+_25348156 AK057730 NM_001001660	-54891	+	BC028415 AK297998 AK302235 AK301763 AK093102 AX747924 BC031047 BC047415 BC057795 NM_001082972 NM_001082973 NM_001204101 NM_001204102 NM_018272 AK304602	-54979	-	TSC_hg19_v1_chr12_-_25403822 BC013572	773	-	TSC_hg19_v1_chr12_-_25403864 AK292510 NM_004985 NM_033360 BC029545 M54968	899	-	AK093323 AX748055 NM_152590 BC037957 AK310411 AK302292 NM_001145728 NM_001145729	303154	-	BC100276|LYRM5|144363|LYR motif containing 5##BC071769|LYRM5|144363|LYR motif containing 5##AK057730|LYRM5|144363|LYR motif containing 5##NM_001001660|LYRM5|144363|LYR motif containing 5##BC028415|CASC1|55259|cancer susceptibility candidate 1##AK297998|CASC1|55259|cancer susceptibility candidate 1##AK302235|CASC1|55259|cancer susceptibility candidate 1##AK301763|CASC1|55259|cancer susceptibility candidate 1##AK093102|CASC1|55259|cancer susceptibility candidate 1##BC031047|CASC1|55259|cancer susceptibility candidate 1##BC047415|CASC1|55259|cancer susceptibility candidate 1##BC057795|CASC1|55259|cancer susceptibility candidate 1##NM_001082972|CASC1|55259|cancer susceptibility candidate 1##NM_001082973|CASC1|55259|cancer susceptibility candidate 1##NM_001204101|CASC1|55259|cancer susceptibility candidate 1##NM_001204102|CASC1|55259|cancer susceptibility candidate 1##NM_018272|CASC1|55259|cancer susceptibility candidate 1##AK304602|CASC1|55259|cancer susceptibility candidate 1##BC013572|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##AK292510|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_004985|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##NM_033360|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##BC029545|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##M54968|KRAS|3845|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog##AK093323|IFLTD1|160492|intermediate filament tail domain containing 1##NM_152590|IFLTD1|160492|intermediate filament tail domain containing 1##BC037957|IFLTD1|160492|intermediate filament tail domain containing 1##AK310411|IFLTD1|160492|intermediate filament tail domain containing 1##AK302292|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145728|IFLTD1|160492|intermediate filament tail domain containing 1##NM_001145729|IFLTD1|160492|intermediate filament tail domain containing 1	0.0	0.0	
chr15	45480744	45480924	reg1013496.p2	3.862	+	TSC_hg19_v1_chr15_-_45480165 AK094391 AK303749	-670	-	AK290372 AF213465 NM_017434 NM_175940 AK075268 AF230495 BC114628 BC114938	-58668	+	BC029819 NM_144565 AK292771 BC020841 TSC_hg19_v1_chr15_-_45422078 AK056896	-58766	-	AK096267 NM_138356	12538	-	AK222709 NM_004212 U84392 AK291974	63607	+	TSC_hg19_v1_chr15_-_45670743 CU678590 S68805 BC004141 AK098055 AK223585 AK294995 AK298350	189905	-	AK094391|SHF|90525|Src homology 2 domain containing F##AK303749|SHF|90525|Src homology 2 domain containing F##AK290372|DUOX1|53905|dual oxidase 1##AF213465|DUOX1|53905|dual oxidase 1##NM_017434|DUOX1|53905|dual oxidase 1##NM_175940|DUOX1|53905|dual oxidase 1##AK075268|DUOX1|53905|dual oxidase 1##AF230495|DUOX1|53905|dual oxidase 1##BC114628|DUOX1|53905|dual oxidase 1##BC114938|DUOX1|53905|dual oxidase 1##BC029819|DUOXA1|90527|dual oxidase maturation factor 1##NM_144565|DUOXA1|90527|dual oxidase maturation factor 1##AK292771|DUOXA1|90527|dual oxidase maturation factor 1##BC020841|DUOXA1|90527|dual oxidase maturation factor 1##AK056896|DUOXA1|90527|dual oxidase maturation factor 1##AK096267|SHF|90525|Src homology 2 domain containing F##NM_138356|SHF|90525|Src homology 2 domain containing F##AK222709|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##NM_004212|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##U84392|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##AK291974|SLC28A2|9153|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2##S68805|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##BC004141|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK098055|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK223585|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK294995|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)##AK298350|GATM|2628|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	0.0	0.0	
chr16	75467797	75467888	reg1015237.p1	3.862	+	BT009819 CR542111 AB463545 CU674490 DQ890998 EU176574 AK313948 TSC_hg19_v1_chr16_-_75467369 AB009285 D85939 BC000991 NM_006324 AK226031	-517	-	AK124815 NM_001170715	-165892	-	AK295809 NM_001170716	-167150	-	TSC_hg19_v1_chr16_-_75498315 AK094930	30455	-	AM392693 AM393662 AY302139 CU676164 TSC_hg19_v1_chr16_-_75498577	30696	-	TSC_hg19_v1_chr16_-_75498598 BC018082 NM_145254 AK298475 BX647432 BX648429 BX648484 AK311919	30759	-	BT009819|CFDP1|10428|craniofacial development protein 1##CR542111|CFDP1|10428|craniofacial development protein 1##DQ890998|CFDP1|10428|craniofacial development protein 1##EU176574|CFDP1|10428|craniofacial development protein 1##AK313948|CFDP1|10428|craniofacial development protein 1##AB009285|CFDP1|10428|craniofacial development protein 1##D85939|CFDP1|10428|craniofacial development protein 1##BC000991|CFDP1|10428|craniofacial development protein 1##NM_006324|CFDP1|10428|craniofacial development protein 1##AK226031|CFDP1|10428|craniofacial development protein 1##AK124815|BCAR1|9564|breast cancer anti-estrogen resistance 1##NM_001170715|BCAR1|9564|breast cancer anti-estrogen resistance 1##AK295809|BCAR1|9564|breast cancer anti-estrogen resistance 1##NM_001170716|BCAR1|9564|breast cancer anti-estrogen resistance 1##AK094930|TMEM170A|124491|transmembrane protein 170A##AY302139|TMEM170A|124491|transmembrane protein 170A##BC018082|TMEM170A|124491|transmembrane protein 170A##NM_145254|TMEM170A|124491|transmembrane protein 170A##AK298475|TMEM170A|124491|transmembrane protein 170A##BX647432|TMEM170A|124491|transmembrane protein 170A##BX648429|TMEM170A|124491|transmembrane protein 170A##BX648484|TMEM170A|124491|transmembrane protein 170A##AK311919|TMEM170A|124491|transmembrane protein 170A	0.029868	0.0	
chr1	79085712	79085892	reg1002877.p1	3.862	+	NM_000959 NM_001039585 AK292845 AK312816 AY485530 L24470 BC112965 AF004021	-129018	+	TSC_hg19_v1_chr1_+_78511749 AK225941 AB073737 AB528004 CU690284	-574040	+	BC036075 NM_017655 TSC_hg19_v1_chr1_+_78511713	-574139	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	329	+	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	29696	+	BC025721 AY358360 AK292894 AK313738 NM_022159	386625	-	NM_000959|PTGFR|5737|prostaglandin F receptor (FP)##NM_001039585|PTGFR|5737|prostaglandin F receptor (FP)##AK292845|PTGFR|5737|prostaglandin F receptor (FP)##AK312816|PTGFR|5737|prostaglandin F receptor (FP)##AY485530|PTGFR|5737|prostaglandin F receptor (FP)##L24470|PTGFR|5737|prostaglandin F receptor (FP)##BC112965|PTGFR|5737|prostaglandin F receptor (FP)##AF004021|PTGFR|5737|prostaglandin F receptor (FP)##AK225941|GIPC2|54810|GIPC PDZ domain containing family, member 2##AB073737|GIPC2|54810|GIPC PDZ domain containing family, member 2##BC036075|GIPC2|54810|GIPC PDZ domain containing family, member 2##NM_017655|GIPC2|54810|GIPC PDZ domain containing family, member 2##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1	0.0	0.0	
chr19	12714441	12714561	reg1003037.p1	3.862	+	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	-52228	-	TSC_hg19_v1_chr19_-_12595631 NM_152601	-118873	-	BC136746 BC136751 AK290911 TSC_hg19_v1_chr19_-_12595603 BC036481	-118925	-	AB385437 CU691590 EU446833 BC038586 AB033024 NM_020714 TSC_hg19_v1_chr19_-_12721628	7060	-	AK307775 NM_153358 AK298597 TSC_hg19_v1_chr19_+_12721749 AX721060 AK074877 AK297715 BC106937 BC106938	7263	+	TSC_hg19_v1_chr19_-_12777530 U68382 U68567 AB209921 DQ891878 DQ895066 AB527181 U60266 BC000736	63011	-	BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564##NM_152601|ZNF709|163051|zinc finger protein 709##BC136746|ZNF709|163051|zinc finger protein 709##BC136751|ZNF709|163051|zinc finger protein 709##AK290911|ZNF709|163051|zinc finger protein 709##BC036481|ZNF709|163051|zinc finger protein 709##EU446833|ZNF490|57474|zinc finger protein 490##BC038586|ZNF490|57474|zinc finger protein 490##AB033024|ZNF490|57474|zinc finger protein 490##NM_020714|ZNF490|57474|zinc finger protein 490##AK307775|ZNF791|163049|zinc finger protein 791##NM_153358|ZNF791|163049|zinc finger protein 791##AK298597|ZNF791|163049|zinc finger protein 791##AK074877|ZNF791|163049|zinc finger protein 791##AK297715|ZNF791|163049|zinc finger protein 791##BC106937|ZNF791|163049|zinc finger protein 791##BC106938|ZNF791|163049|zinc finger protein 791##U68382|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U68567|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##AB209921|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ891878|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##DQ895066|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##U60266|MAN2B1|4125|mannosidase, alpha, class 2B, member 1##BC000736|MAN2B1|4125|mannosidase, alpha, class 2B, member 1	0.469621	0.0	denovo_WM_7:-50:0.444
chr19	18655167	18655347	reg1007899.p2	3.862	+	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	-875	-	TSC_hg19_v1_chr19_-_18654341 AY278607 AK313363 BX647720	-934	-	TSC_hg19_v1_chr19_-_18653874 AK300571	-1480	-	NM_001171948 NM_001171949 NM_024069 TSC_hg19_v1_chr19_+_18668584 AK125365 AK098346 BC001080 BC006479	13353	+	TSC_hg19_v1_chr19_+_18668679 AF173381	13417	+	NM_001033930 NM_003333 TSC_hg19_v1_chr19_+_18682666 AF348700 BC101830 BC101832 BC143668 D28425 AK314717	27400	+	BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa##AY278607|FKBP8|23770|FK506 binding protein 8, 38kDa##AK313363|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647720|FKBP8|23770|FK506 binding protein 8, 38kDa##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_001171948|KXD1|79036|KxDL motif containing 1##NM_001171949|KXD1|79036|KxDL motif containing 1##NM_024069|KXD1|79036|KxDL motif containing 1##AK125365|KXD1|79036|KxDL motif containing 1##AK098346|KXD1|79036|KxDL motif containing 1##BC001080|KXD1|79036|KxDL motif containing 1##BC006479|KXD1|79036|KxDL motif containing 1##AF173381|KXD1|79036|KxDL motif containing 1##NM_001033930|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_003333|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AF348700|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101830|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101832|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC143668|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AK314717|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1	0.0	0.0	
chr9	27491295	27491400	reg1017834.p1	3.862	+	BC137351 BC137352 BC144602 BC014307 AJ278482 NM_001161585 NM_020641	-194226	-	AK294887 NM_000459	-382205	+	BC126156 BC136298 AK222987 AK024955 BC056252 NM_022901	-485678	-	AF146759 AF315688 NM_020124 AY358855 AB463795	32975	+	TSC_hg19_v1_chr9_-_27529809 AL832572 BC033027 AK023266 NM_024761	38303	-	AL832229 AL832467 TSC_hg19_v1_chr9_-_27573476 AK291425 NM_018325	82124	-	BC137351|C9orf11|54586|chromosome 9 open reading frame 11##BC137352|C9orf11|54586|chromosome 9 open reading frame 11##BC144602|C9orf11|54586|chromosome 9 open reading frame 11##BC014307|C9orf11|54586|chromosome 9 open reading frame 11##AJ278482|C9orf11|54586|chromosome 9 open reading frame 11##NM_001161585|C9orf11|54586|chromosome 9 open reading frame 11##NM_020641|C9orf11|54586|chromosome 9 open reading frame 11##AK294887|TEK|7010|TEK tyrosine kinase, endothelial##NM_000459|TEK|7010|TEK tyrosine kinase, endothelial##BC126156|LRRC19|64922|leucine rich repeat containing 19##BC136298|LRRC19|64922|leucine rich repeat containing 19##AK222987|LRRC19|64922|leucine rich repeat containing 19##AK024955|LRRC19|64922|leucine rich repeat containing 19##BC056252|LRRC19|64922|leucine rich repeat containing 19##NM_022901|LRRC19|64922|leucine rich repeat containing 19##AF146759|IFNK|56832|interferon, kappa##AF315688|IFNK|56832|interferon, kappa##NM_020124|IFNK|56832|interferon, kappa##AY358855|IFNK|56832|interferon, kappa##AL832572|MOB3B|79817|MOB kinase activator 3B##BC033027|MOB3B|79817|MOB kinase activator 3B##AK023266|MOB3B|79817|MOB kinase activator 3B##NM_024761|MOB3B|79817|MOB kinase activator 3B##AL832229|C9orf72|203228|chromosome 9 open reading frame 72##AL832467|C9orf72|203228|chromosome 9 open reading frame 72##AK291425|C9orf72|203228|chromosome 9 open reading frame 72##NM_018325|C9orf72|203228|chromosome 9 open reading frame 72	0.0955	0.0	
chr12	40586835	40587015	reg1001212.p2	3.861	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-87053	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-87236	-	BC038754 NM_001031748 BC048120 AK097445	-566930	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	31934	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	499357	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	995283	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.0	0.0	
chr14	67774847	67774978	reg1013316.p1	3.861	+	BC095485 TSC_hg19_v1_chr14_+_67708117 NM_022474 AK291240 AK098373 BC053366 AL832326 BC129933 AL832578 BC037966 AK057160	-66749	+	NM_173526 AK093449 AX748134 AK302154 BC037380 BC050401	-118769	+	AJ272343 TSC_hg19_v1_chr14_+_66975224 AK294532 AK297447 BC030016 DQ892463 DQ895675 AB385462 AJ272033	-799687	+	CU692980 TSC_hg19_v1_chr14_-_67826522 BC001411 AF104629 BC031002 AK315784 AK001155 AF145316 AF077614 AF100741 BC025373 NM_015994	51654	-	TSC_hg19_v1_chr14_+_67827035 NM_004094	52121	+	TSC_hg19_v1_chr14_+_67827053 AK312442 BX161521 AK297244	52138	+	BC095485|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_022474|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK291240|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AK098373|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC053366|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832326|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC129933|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##AL832578|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##BC037966|MPP5|64398|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)##NM_173526|FAM71D|161142|family with sequence similarity 71, member D##AK093449|FAM71D|161142|family with sequence similarity 71, member D##AK302154|FAM71D|161142|family with sequence similarity 71, member D##BC037380|FAM71D|161142|family with sequence similarity 71, member D##BC050401|FAM71D|161142|family with sequence similarity 71, member D##AJ272343|GPHN|10243|gephyrin##AK294532|GPHN|10243|gephyrin##AK297447|GPHN|10243|gephyrin##BC030016|GPHN|10243|gephyrin##DQ892463|GPHN|10243|gephyrin##DQ895675|GPHN|10243|gephyrin##AJ272033|GPHN|10243|gephyrin##BC001411|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF104629|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC031002|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK315784|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AK001155|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF145316|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF077614|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##AF100741|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##BC025373|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_015994|ATP6V1D|51382|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D##NM_004094|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##AK312442|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##BX161521|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa##AK297244|EIF2S1|1965|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa	0.999436	0.0	denovo_WM_7:45:0.964
chr16	69604877	69605039	reg1006556.p1	3.861	+	AJ243298 AJ243299 TSC_hg19_v1_chr16_+_69600112 AJ005683 AJ005684	-4777	+	TSC_hg19_v1_chr16_+_69599907 AB020634 BC146765 AF089824 BC089395 BC131509	-5042	+	NM_001113178 NM_006599 NM_138713 NM_138714 NM_173214 NM_173215 TSC_hg19_v1_chr16_+_69599868	-5090	+	AF134870 TSC_hg19_v1_chr16_+_69681070	76056	+	U80231 AK000312 TSC_hg19_v1_chr16_+_69726827	121831	+	TSC_hg19_v1_chr16_-_69760362 AK316246	155402	-	AJ243298|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ243299|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005683|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AJ005684|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AB020634|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC146765|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF089824|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC089395|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##BC131509|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_001113178|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_006599|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138713|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_138714|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173214|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##NM_173215|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AF134870|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##U80231|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK000312|NFAT5|10725|nuclear factor of activated T-cells 5, tonicity-responsive##AK316246|NQO1|1728|NAD(P)H dehydrogenase, quinone 1	1.985798	0.0	
chr20	33999858	34000038	reg1014305.p1	3.861	+	TSC_hg19_v1_chr20_-_33999791 AK225281 AK293149 BC119013 BC122862 AY050659 NM_001184977 NM_018244 NM_199487	-86	-	BC008871 AB528278 AM392884 AM393853 TSC_hg19_v1_chr20_-_33999777 AK001712 AK022650 AK022742 AK225557 AK293516 AK300130 AK302133 AK308819 BC105791	-179	-	BC113483 AK091116 AX746786 NM_178468	-119735	-	AB593125 U13660 NM_000557	26042	-	TSC_hg19_v1_chr20_+_34042987 AK307861 AB621828 AF049105 NM_007186	43126	+	AK058089 AK310337 NM_001145350	117515	-	AK225281|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293149|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC119013|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC122862|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AY050659|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_001184977|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_018244|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_199487|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC008871|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM392884|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM393853|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK001712|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022650|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022742|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225557|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293516|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK300130|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK302133|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK308819|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC105791|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC113483|FAM83C|128876|family with sequence similarity 83, member C##AK091116|FAM83C|128876|family with sequence similarity 83, member C##NM_178468|FAM83C|128876|family with sequence similarity 83, member C##AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5##AK307861|CEP250|11190|centrosomal protein 250kDa##AF049105|CEP250|11190|centrosomal protein 250kDa##NM_007186|CEP250|11190|centrosomal protein 250kDa##AK058089|C20orf173|140873|chromosome 20 open reading frame 173##AK310337|C20orf173|140873|chromosome 20 open reading frame 173##NM_001145350|C20orf173|140873|chromosome 20 open reading frame 173	0.0	0.0	
chr5	129103640	129103755	reg1016604.p1	3.861	+	TSC_hg19_v1_chr5_+_128796007 AJ311904 NM_133638	-307644	+	TSC_hg19_v1_chr5_+_128430443 AF151869 NM_016048 AK025787 BC014105 DQ895427 BC008367	-673272	+	TSC_hg19_v1_chr5_+_128301169 BX537383 NM_014031 NM_001017372 AK313456 AL833117	-802500	+	BC137325 AB086062 AB175496 AJ632296 AJ862728 NM_175856	136790	+	CR457048 TSC_hg19_v1_chr5_-_130500958 BC001287 U27143 AK026557	1397234	-	TSC_hg19_v1_chr5_-_130500994 BC028300 BC007090	1397293	-	AJ311904|ADAMTS19|171019|ADAM metallopeptidase with thrombospondin type 1 motif, 19##NM_133638|ADAMTS19|171019|ADAM metallopeptidase with thrombospondin type 1 motif, 19##AF151869|ISOC1|51015|isochorismatase domain containing 1##NM_016048|ISOC1|51015|isochorismatase domain containing 1##AK025787|ISOC1|51015|isochorismatase domain containing 1##BC014105|ISOC1|51015|isochorismatase domain containing 1##DQ895427|ISOC1|51015|isochorismatase domain containing 1##BC008367|ISOC1|51015|isochorismatase domain containing 1##BX537383|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##NM_014031|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##NM_001017372|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##AK313456|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##AL833117|SLC27A6|28965|solute carrier family 27 (fatty acid transporter), member 6##BC137325|CHSY3|337876|chondroitin sulfate synthase 3##AB086062|CHSY3|337876|chondroitin sulfate synthase 3##AB175496|CHSY3|337876|chondroitin sulfate synthase 3##AJ632296|CHSY3|337876|chondroitin sulfate synthase 3##AJ862728|CHSY3|337876|chondroitin sulfate synthase 3##NM_175856|CHSY3|337876|chondroitin sulfate synthase 3##CR457048|HINT1|3094|histidine triad nucleotide binding protein 1##BC001287|HINT1|3094|histidine triad nucleotide binding protein 1##U27143|HINT1|3094|histidine triad nucleotide binding protein 1##AK026557|HINT1|3094|histidine triad nucleotide binding protein 1##BC028300|HINT1|3094|histidine triad nucleotide binding protein 1##BC007090|HINT1|3094|histidine triad nucleotide binding protein 1	0.0	1.339813	CTCF.p2:-2:0.341	CTCF.p2:74:0.999
chr8	41589119	41589193	reg1011403.p2	3.861	+	AK223578 AK129864 BC007930 BC030957 BC014467 NM_001142445 NM_020478 NM_020480	-66393	-	AB587362 AK057898 NM_152568	-84281	-	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	-153462	+	M28880 NM_000037 NM_020475 NM_020476 NM_020477 X16609 TSC_hg19_v1_chr8_-_41655141	65984	-	AK026601 TSC_hg19_v1_chr8_+_41685847	96669	+	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	165154	-	AK223578|ANK1|286|ankyrin 1, erythrocytic##AK129864|ANK1|286|ankyrin 1, erythrocytic##BC007930|ANK1|286|ankyrin 1, erythrocytic##BC030957|ANK1|286|ankyrin 1, erythrocytic##BC014467|ANK1|286|ankyrin 1, erythrocytic##NM_001142445|ANK1|286|ankyrin 1, erythrocytic##NM_020478|ANK1|286|ankyrin 1, erythrocytic##NM_020480|ANK1|286|ankyrin 1, erythrocytic##AK057898|NKX6-3|157848|NK6 homeobox 3##NM_152568|NKX6-3|157848|NK6 homeobox 3##NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##M28880|ANK1|286|ankyrin 1, erythrocytic##NM_000037|ANK1|286|ankyrin 1, erythrocytic##NM_020475|ANK1|286|ankyrin 1, erythrocytic##NM_020476|ANK1|286|ankyrin 1, erythrocytic##NM_020477|ANK1|286|ankyrin 1, erythrocytic##X16609|ANK1|286|ankyrin 1, erythrocytic##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic	1.445274	0.0	denovo_WM_7:99:0.450
chr9	134622900	134622994	reg1012742.p2	3.861	+	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	-7657	-	D21239 NM_005312	-10023	-	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	-37745	-	Z36848 AF104252 AF230382 DQ099387 AB527898 EU446747 TSC_hg19_v1_chr9_-_134955238 BC064608 BC070331	332202	-	TSC_hg19_v1_chr9_-_134955246 BC119722 BC119723 AK298436 AK316345 BC002878 NM_004269	332303	-	TSC_hg19_v1_chr9_+_135037083 AY358165	414144	+	EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##Z36848|MED27|9442|mediator complex subunit 27##AF104252|MED27|9442|mediator complex subunit 27##AF230382|MED27|9442|mediator complex subunit 27##DQ099387|MED27|9442|mediator complex subunit 27##EU446747|MED27|9442|mediator complex subunit 27##BC064608|MED27|9442|mediator complex subunit 27##BC070331|MED27|9442|mediator complex subunit 27##BC119722|CRSP8P|441089|mediator complex subunit 27 pseudogene##BC119723|CRSP8P|441089|mediator complex subunit 27 pseudogene##AK298436|MED27|9442|mediator complex subunit 27##AK316345|MED27|9442|mediator complex subunit 27##BC002878|MED27|9442|mediator complex subunit 27##NM_004269|MED27|9442|mediator complex subunit 27##AY358165|NTNG2|84628|netrin G2	0.0	0.906534	CTCF.p2:15:0.907
chr1	181455161	181455293	reg1011825.p1	3.860	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	-2527	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-397362	+	NM_016545	-397590	+	BC137223 BC137224 AK128654 NM_001009992	575570	-	TSC_hg19_v1_chr1_-_182354649 AK301600	899455	-	TSC_hg19_v1_chr1_-_182357758 BC127883	902536	-	NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase##BC127883|GLUL|2752|glutamate-ammonia ligase	0.0	0.0	
chr12	14308621	14308781	reg1012484.p1	3.860	+	BC113618 BC113620 NM_000834 U88963 U90278 U11287	-175715	-	TSC_hg19_v1_chr12_+_13349720 AK312246 Z50751	-958972	+	TSC_hg19_v1_chr12_+_13349719 AK299388 BC017854	-958984	+	TSC_hg19_v1_chr12_+_14518615 AK299320 AK025060 NM_018179 BC063855 BC053625	209934	+	TSC_hg19_v1_chr12_+_14538267 AK308062 AK304184 BX648096	229571	+	AK026315 AK225458 AK290914 BC063561 TSC_hg19_v1_chr12_-_14720666	411908	-	BC113618|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##BC113620|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##NM_000834|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U88963|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U90278|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##U11287|GRIN2B|2904|glutamate receptor, ionotropic, N-methyl D-aspartate 2B##AK312246|EMP1|2012|epithelial membrane protein 1##Z50751|EMP1|2012|epithelial membrane protein 1##AK299388|EMP1|2012|epithelial membrane protein 1##BC017854|EMP1|2012|epithelial membrane protein 1##AK299320|ATF7IP|55729|activating transcription factor 7 interacting protein##AK025060|ATF7IP|55729|activating transcription factor 7 interacting protein##NM_018179|ATF7IP|55729|activating transcription factor 7 interacting protein##BC063855|ATF7IP|55729|activating transcription factor 7 interacting protein##BC053625|ATF7IP|55729|activating transcription factor 7 interacting protein##AK304184|ATF7IP|55729|activating transcription factor 7 interacting protein##BX648096|ATF7IP|55729|activating transcription factor 7 interacting protein##AK026315|PLBD1|79887|phospholipase B domain containing 1##AK225458|PLBD1|79887|phospholipase B domain containing 1##AK290914|PLBD1|79887|phospholipase B domain containing 1##BC063561|PLBD1|79887|phospholipase B domain containing 1	0.984485	0.0	denovo_WM_7:-31:0.296	denovo_WM_7:-32:0.296	denovo_WM_7:-33:0.296
chr14	54168033	54168113	reg1016067.p1	3.860	+	TSC_hg19_v1_chr14_-_53620035 NM_001160147 NM_001160148 NM_030637	-548023	-	TSC_hg19_v1_chr14_-_53619974 DQ315474 GU376468 BC030703	-548105	-	TSC_hg19_v1_chr14_-_53619887 AK125372	-548200	-	NM_130851	253196	-	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	255460	-	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	695648	+	NM_001160147|DDHD1|80821|DDHD domain containing 1##NM_001160148|DDHD1|80821|DDHD domain containing 1##NM_030637|DDHD1|80821|DDHD domain containing 1##DQ315474|DDHD1|80821|DDHD domain containing 1##GU376468|DDHD1|80821|DDHD domain containing 1##BC030703|DDHD1|80821|DDHD domain containing 1##AK125372|DDHD1|80821|DDHD domain containing 1##NM_130851|BMP4|652|bone morphogenetic protein 4##BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3	0.020192	0.0	
chr19	11290322	11290423	reg1014907.p1	3.860	+	AY456387 TSC_hg19_v1_chr19_-_11266459 AK075287 AK303157 AK303266 BC105037 BC105039 NM_182513	-23905	-	TSC_hg19_v1_chr19_+_11200148 AB209409 BC014514 AY114155 AB384938 DQ893879 BT007361	-90187	+	TSC_hg19_v1_chr19_+_11200138 AK295612 AK296312 AK299038 AK300313	-90240	+	AB528156 AY639929 CU687364 NM_015493	14853	-	TSC_hg19_v1_chr19_-_11308222 BC082762 AB284125 NM_001136191	17886	-	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	18090	-	AY456387|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK075287|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303157|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AK303266|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105037|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##BC105039|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##NM_182513|SPC24|147841|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)##AB209409|LDLR|3949|low density lipoprotein receptor##BC014514|LDLR|3949|low density lipoprotein receptor##AY114155|LDLR|3949|low density lipoprotein receptor##DQ893879|LDLR|3949|low density lipoprotein receptor##BT007361|LDLR|3949|low density lipoprotein receptor##AK295612|LDLR|3949|low density lipoprotein receptor##AK296312|LDLR|3949|low density lipoprotein receptor##AK299038|LDLR|3949|low density lipoprotein receptor##AK300313|LDLR|3949|low density lipoprotein receptor##AY639929|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_015493|KANK2|25959|KN motif and ankyrin repeat domains 2##BC082762|KANK2|25959|KN motif and ankyrin repeat domains 2##AB284125|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_001136191|KANK2|25959|KN motif and ankyrin repeat domains 2##AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2	1.779341	0.0	denovo_WM_7:1:0.790
chr2	13671703	13671781	reg1011557.p1	3.860	+	TSC_hg19_v1_chr2_+_12858363 AB529001 CU678082	-813345	+	TSC_hg19_v1_chr2_+_12857898 AK313237 BC002637	-813826	+	TSC_hg19_v1_chr2_+_12857176 NM_021643 AY245544 AK299146 D87119	-814489	+	NM_145175 TSC_hg19_v1_chr2_+_14772817	1101079	+	TSC_hg19_v1_chr2_+_14772845 AK092654 AK314463 AX747656 AJ417080 BC029933 BC052284 AF370404	1101109	+	AL832774 AF056195 AL833270 TSC_hg19_v1_chr2_-_15701444	2029687	-	AK313237|TRIB2|28951|tribbles homolog 2 (Drosophila)##BC002637|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_021643|TRIB2|28951|tribbles homolog 2 (Drosophila)##AY245544|TRIB2|28951|tribbles homolog 2 (Drosophila)##AK299146|TRIB2|28951|tribbles homolog 2 (Drosophila)##D87119|TRIB2|28951|tribbles homolog 2 (Drosophila)##NM_145175|FAM84A|151354|family with sequence similarity 84, member A##AK092654|FAM84A|151354|family with sequence similarity 84, member A##AK314463|FAM84A|151354|family with sequence similarity 84, member A##AJ417080|FAM84A|151354|family with sequence similarity 84, member A##BC029933|FAM84A|151354|family with sequence similarity 84, member A##BC052284|FAM84A|151354|family with sequence similarity 84, member A##AF370404|FAM84A|151354|family with sequence similarity 84, member A##AL832774|NBAS|51594|neuroblastoma amplified sequence##AF056195|NBAS|51594|neuroblastoma amplified sequence##AL833270|NBAS|51594|neuroblastoma amplified sequence	1.004369	0.0	denovo_WM_7:-70:0.269	denovo_WM_7:-71:0.720
chr3	197539420	197539506	reg1004984.p2	3.860	+	TSC_hg19_v1_chr3_+_197518134 AK300466 AK303521 BC007504 NM_032773 CU675675 DQ893268 DQ896598	-21324	+	TSC_hg19_v1_chr3_+_197518124 AK293745	-21366	+	TSC_hg19_v1_chr3_+_197477223 AK302546	-62222	+	BC068973 TSC_hg19_v1_chr3_-_197676768 AK027224 NM_001134435	137312	-	BC010949 TSC_hg19_v1_chr3_+_197677063 AY871273 NM_000996 AB055768 X52966 AK026542 BC001037 BC061890 BC017093	137613	+	BC016156 TSC_hg19_v1_chr3_-_197686873 AK095094 AL136889 NM_032263	147401	-	AK300466|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##AK303521|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##BC007504|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##NM_032773|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##DQ893268|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##DQ896598|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##AK293745|LRCH3|84859|leucine-rich repeats and calponin homology (CH) domain containing 3##AK302546|FYTTD1|84248|forty-two-three domain containing 1##BC068973|IQCG|84223|IQ motif containing G##AK027224|IQCG|84223|IQ motif containing G##NM_001134435|IQCG|84223|IQ motif containing G##BC010949|RPL35A|6165|ribosomal protein L35a##AY871273|RPL35A|6165|ribosomal protein L35a##NM_000996|RPL35A|6165|ribosomal protein L35a##AB055768|RPL35A|6165|ribosomal protein L35a##X52966|RPL35A|6165|ribosomal protein L35a##AK026542|RPL35A|6165|ribosomal protein L35a##BC001037|RPL35A|6165|ribosomal protein L35a##BC061890|RPL35A|6165|ribosomal protein L35a##BC017093|RPL35A|6165|ribosomal protein L35a##BC016156|IQCG|84223|IQ motif containing G##AK095094|IQCG|84223|IQ motif containing G##AL136889|IQCG|84223|IQ motif containing G##NM_032263|IQCG|84223|IQ motif containing G	0.998968	0.0	
chr6	138799129	138799224	reg1007923.p2	3.860	+	BC010290 TSC_hg19_v1_chr6_+_138725477 BC008205 BC093037 AF411610	-73631	+	TSC_hg19_v1_chr6_+_138725355 NM_014320 AF117616 BC016806 BC016807 AK057928 AY427823	-73791	+	BC069109 NM_021635 AF189269 AF189270	-259550	-	AK307584 NM_001144060 TSC_hg19_v1_chr6_-_138820579	21402	-	TSC_hg19_v1_chr6_-_138820580 AK092744 AX747703	21440	-	TSC_hg19_v1_chr6_-_138893682 NM_020464	94532	-	BC010290|HEBP2|23593|heme binding protein 2##BC008205|HEBP2|23593|heme binding protein 2##BC093037|HEBP2|23593|heme binding protein 2##AF411610|HEBP2|23593|heme binding protein 2##NM_014320|HEBP2|23593|heme binding protein 2##AF117616|HEBP2|23593|heme binding protein 2##BC016806|HEBP2|23593|heme binding protein 2##BC016807|HEBP2|23593|heme binding protein 2##AK057928|HEBP2|23593|heme binding protein 2##AY427823|HEBP2|23593|heme binding protein 2##BC069109|PBOV1|59351|prostate and breast cancer overexpressed 1##NM_021635|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189269|PBOV1|59351|prostate and breast cancer overexpressed 1##AF189270|PBOV1|59351|prostate and breast cancer overexpressed 1##AK307584|NHSL1|57224|NHS-like 1##NM_001144060|NHSL1|57224|NHS-like 1##NM_020464|NHSL1|57224|NHS-like 1	1.979596	0.0	denovo_WM_7:-4:0.975	denovo_WM_7:-19:0.974
chr7	92261356	92261536	reg1002426.p2	3.860	+	TSC_hg19_v1_chr7_-_92219705 BC079834 BC090868 BC057771 AK125498 AL833918 BC017874 NM_001040057 NM_152789 BC062706	-41748	-	TSC_hg19_v1_chr7_-_92219660 BC032461 BC157872	-41804	-	BC104865 BC104867 BC143576 NM_032120 CR933641 BC044570 AL136619 BC020919 BC033561 CR936726 AK294626 AK294812 AF161422 BC065716 CR533549	-103340	+	AB528631 CU690894 X66365 TSC_hg19_v1_chr7_-_92462894	201321	-	BC052264 TSC_hg19_v1_chr7_-_92463219 NM_001259	201774	-	AK313491 TSC_hg19_v1_chr7_-_92465884	204452	-	BC090868|FAM133B|257415|family with sequence similarity 133, member B##BC057771|FAM133B|257415|family with sequence similarity 133, member B##AK125498|FAM133B|257415|family with sequence similarity 133, member B##AL833918|FAM133B|257415|family with sequence similarity 133, member B##BC017874|FAM133B|257415|family with sequence similarity 133, member B##NM_001040057|FAM133B|257415|family with sequence similarity 133, member B##NM_152789|FAM133B|257415|family with sequence similarity 133, member B##BC062706|FAM133B|257415|family with sequence similarity 133, member B##BC032461|FAM133B|257415|family with sequence similarity 133, member B##BC157872|FAM133B|257415|family with sequence similarity 133, member B##BC104865|RBM48|84060|RNA binding motif protein 48##BC104867|RBM48|84060|RNA binding motif protein 48##BC143576|RBM48|84060|RNA binding motif protein 48##NM_032120|RBM48|84060|RNA binding motif protein 48##CR933641|RBM48|84060|RNA binding motif protein 48##BC044570|RBM48|84060|RNA binding motif protein 48##AL136619|RBM48|84060|RNA binding motif protein 48##BC020919|RBM48|84060|RNA binding motif protein 48##BC033561|RBM48|84060|RNA binding motif protein 48##CR936726|RBM48|84060|RNA binding motif protein 48##AK294626|RBM48|84060|RNA binding motif protein 48##AK294812|RBM48|84060|RNA binding motif protein 48##AF161422|RBM48|84060|RNA binding motif protein 48##BC065716|RBM48|84060|RNA binding motif protein 48##CR533549|RBM48|84060|RNA binding motif protein 48##X66365|CDK6|1021|cyclin-dependent kinase 6##BC052264|CDK6|1021|cyclin-dependent kinase 6##NM_001259|CDK6|1021|cyclin-dependent kinase 6##AK313491|CDK6|1021|cyclin-dependent kinase 6	0.0	0.0	
chr9	37396287	37396386	reg1016612.p1	3.860	+	BC005990 TSC_hg19_v1_chr9_+_37120604 AK303193 AK026264 BC022434 AK315128 BC036940	-275753	+	TSC_hg19_v1_chr9_+_37120506 BC034022	-275828	+	NM_032226 TSC_hg19_v1_chr9_+_37120504	-275850	+	TSC_hg19_v1_chr9_+_37422720 AK025978 BC088360 AF113251 AK307325 AK315690 AF113215 AF134895 BC003131 NM_012203 AF146018 AK307902 BC000605 AB528142 AM393403 AM393629	26370	+	BC010007 TSC_hg19_v1_chr9_-_37465267	68924	-	TSC_hg19_v1_chr9_-_37465398 AB002352 NM_014872	69059	-	BC005990|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK303193|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK026264|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC022434|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK315128|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC036940|ZCCHC7|84186|zinc finger, CCHC domain containing 7##BC034022|ZCCHC7|84186|zinc finger, CCHC domain containing 7##NM_032226|ZCCHC7|84186|zinc finger, CCHC domain containing 7##AK025978|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC088360|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113251|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307325|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK315690|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF113215|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF134895|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC003131|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##NM_012203|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AF146018|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AK307902|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC000605|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393403|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##AM393629|GRHPR|9380|glyoxylate reductase/hydroxypyruvate reductase##BC010007|ZBTB5|9925|zinc finger and BTB domain containing 5##AB002352|ZBTB5|9925|zinc finger and BTB domain containing 5##NM_014872|ZBTB5|9925|zinc finger and BTB domain containing 5	0.99494	0.029906	
chrY	234376	234544	reg1015866.p1	3.860	+	NM_018390 BC064136 BC005028 BC000888 BC032072	-86353	+	None	None	None	None	None	None	AK293506 NM_013239	63229	-	NM_000451 NM_006883 U89331	300618	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	1047124	-	NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2	0.0	0.031862	
chr1	208108715	208108839	reg1011452.p2	3.859	+	BC039146 AK291529 TSC_hg19_v1_chr1_-_208084444 AK293030 AK294381 AF523361 S53910 S53911 AK300835 M81104 NM_001025109 NM_001773	-24220	-	TSC_hg19_v1_chr1_-_208084379 DQ891428 DQ894603	-24394	-	BX640941 TSC_hg19_v1_chr1_-_208059392	-49454	-	TSC_hg19_v1_chr1_-_208417635 NM_025179	308872	-	AK091113 AX746785 NM_001104548	1493388	+	NM_020439 AK095713 AK289675 AF428261 BC032787	1648283	+	BC039146|CD34|947|CD34 molecule##AK291529|CD34|947|CD34 molecule##AK293030|CD34|947|CD34 molecule##AK294381|CD34|947|CD34 molecule##AF523361|CD34|947|CD34 molecule##S53910|CD34|947|CD34 molecule##S53911|CD34|947|CD34 molecule##AK300835|CD34|947|CD34 molecule##M81104|CD34|947|CD34 molecule##NM_001025109|CD34|947|CD34 molecule##NM_001773|CD34|947|CD34 molecule##DQ891428|CD34|947|CD34 molecule##DQ894603|CD34|947|CD34 molecule##NM_025179|PLXNA2|5362|plexin A2##NM_001104548|MIR205HG|642587|MIR205 host gene (non-protein coding)##NM_020439|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK095713|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AK289675|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##AF428261|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG##BC032787|CAMK1G|57172|calcium/calmodulin-dependent protein kinase IG	0.0	0.0	
chr12	50147960	50148051	reg1000414.p2	3.859	+	BC036203 TSC_hg19_v1_chr12_+_50135987	-12034	+	NM_001098576 AK124849	-12413	+	TSC_hg19_v1_chr12_+_50135353 AK312238 BC000916 AF033095	-12647	+	TSC_hg19_v1_chr12_+_50156978 AK026605	9023	+	TSC_hg19_v1_chr12_-_50222197 NM_001037806	74194	-	CU690986 BC053560 BC040957 AK292194 NM_181708	88884	-	BC036203|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001098576|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK124849|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK312238|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##BC000916|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AF033095|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##AK026605|TMBIM6|7009|transmembrane BAX inhibitor motif containing 6##NM_001037806|NCKAP5L|57701|NCK-associated protein 5-like##BC053560|BCDIN3D|144233|BCDIN3 domain containing##BC040957|BCDIN3D|144233|BCDIN3 domain containing##AK292194|BCDIN3D|144233|BCDIN3 domain containing##NM_181708|BCDIN3D|144233|BCDIN3 domain containing	0.0	0.0	
chr15	79299327	79299402	reg1011853.p1	3.859	+	NM_153815 S62035	-1363	-	TSC_hg19_v1_chr15_-_79237389 AL110099 BC002479 BC018821 AK309491 AK314698 D28436 AK130158 NM_004390	-61965	-	TSC_hg19_v1_chr15_-_79237350 AF426247 AF426248 CR456881 CU677980 DQ890683 DQ893772 AK295583 X16832	-62029	-	L26584 CU691844 AB385192 TSC_hg19_v1_chr15_-_79382954	83535	-	AK290135 TSC_hg19_v1_chr15_-_79383114 BC040275 NM_001145648 NM_002891	83784	-	AK127037 NM_001146341	275781	+	NM_153815|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##S62035|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AL110099|CTSH|1512|cathepsin H##BC002479|CTSH|1512|cathepsin H##BC018821|CTSH|1512|cathepsin H##AK309491|CTSH|1512|cathepsin H##AK314698|CTSH|1512|cathepsin H##D28436|CTSH|1512|cathepsin H##AK130158|CTSH|1512|cathepsin H##NM_004390|CTSH|1512|cathepsin H##AF426247|CTSH|1512|cathepsin H##AF426248|CTSH|1512|cathepsin H##CR456881|CTSH|1512|cathepsin H##DQ890683|CTSH|1512|cathepsin H##DQ893772|CTSH|1512|cathepsin H##X16832|CTSH|1512|cathepsin H##L26584|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AK290135|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##BC040275|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##NM_001145648|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##NM_002891|RASGRF1|5923|Ras protein-specific guanine nucleotide-releasing factor 1##AK127037|ANKRD34C|390616|ankyrin repeat domain 34C##NM_001146341|ANKRD34C|390616|ankyrin repeat domain 34C	0.0	0.0	
chr15	90830167	90830278	reg1002229.p2	3.859	+	TSC_hg19_v1_chr15_+_90808921 AB029315 NM_001033088 AL834503 BC007222 AL360142 AK312641 BC017192 BC019023 AF242770 AL355700 BC009389 BC096824 AF225423	-21302	+	TSC_hg19_v1_chr15_+_90792763 BC036668 NM_001029964 AK127965 BC052201	-37447	+	TSC_hg19_v1_chr15_+_90777469 BC127821 NM_001013657	-52748	+	AK289385 NM_001004309 BC067279 CR749343	65301	+	BC151834 D29640 TSC_hg19_v1_chr15_+_90931449	101232	+	TSC_hg19_v1_chr15_+_90931479 NM_003870	101255	+	AB029315|NGRN|51335|neugrin, neurite outgrowth associated##NM_001033088|NGRN|51335|neugrin, neurite outgrowth associated##AL834503|NGRN|51335|neugrin, neurite outgrowth associated##BC007222|NGRN|51335|neugrin, neurite outgrowth associated##AL360142|NGRN|51335|neugrin, neurite outgrowth associated##AK312641|NGRN|51335|neugrin, neurite outgrowth associated##BC017192|NGRN|51335|neugrin, neurite outgrowth associated##BC019023|NGRN|51335|neugrin, neurite outgrowth associated##AF242770|NGRN|51335|neugrin, neurite outgrowth associated##AL355700|NGRN|51335|neugrin, neurite outgrowth associated##BC009389|NGRN|51335|neugrin, neurite outgrowth associated##BC096824|NGRN|51335|neugrin, neurite outgrowth associated##AF225423|NGRN|51335|neugrin, neurite outgrowth associated##BC036668|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##NM_001029964|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##AK127965|TTLL13|440307|tubulin tyrosine ligase-like family, member 13##BC127821|C15orf58|390637|chromosome 15 open reading frame 58##NM_001013657|C15orf58|390637|chromosome 15 open reading frame 58##AK289385|ZNF774|342132|zinc finger protein 774##NM_001004309|ZNF774|342132|zinc finger protein 774##BC067279|ZNF774|342132|zinc finger protein 774##CR749343|ZNF774|342132|zinc finger protein 774##BC151834|IQGAP1|8826|IQ motif containing GTPase activating protein 1##D29640|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_003870|IQGAP1|8826|IQ motif containing GTPase activating protein 1	1.811664	0.0	denovo_WM_7:51:0.443	denovo_WM_7:-55:0.651
chr1	8487395	8487548	reg1000256.p1	3.859	+	TSC_hg19_v1_chr1_-_8483893 AF016005 NM_001042682	-3454	-	NM_001080397	-103082	+	NM_018948 TSC_hg19_v1_chr1_-_8086396	-401073	-	BC062342 AB036737 TSC_hg19_v1_chr1_-_8877700 NM_001042681 NM_012102 BC009619	390121	-	GU170215 NM_001201483	444163	-	BC001810 TSC_hg19_v1_chr1_-_8938710 AK098420 M14328 BC011130	451236	-	AF016005|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042682|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001080397|SLC45A1|50651|solute carrier family 45, member 1##NM_018948|ERRFI1|54206|ERBB receptor feedback inhibitor 1##BC062342|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##AB036737|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_001042681|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##NM_012102|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##BC009619|RERE|473|arginine-glutamic acid dipeptide (RE) repeats##GU170215|ENO1|2023|enolase 1, (alpha)##NM_001201483|ENO1|2023|enolase 1, (alpha)##BC001810|ENO1|2023|enolase 1, (alpha)##AK098420|ENO1|2023|enolase 1, (alpha)##M14328|ENO1|2023|enolase 1, (alpha)##BC011130|ENO1|2023|enolase 1, (alpha)	0.0	0.0	
chr19	6528151	6528331	reg1001617.p2	3.859	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-25924	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-46458	-	NM_139161 NM_174881 AK292956 AF503290 AY358684 BC018409 AK000653	-63957	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	2785	+	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	62791	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	62865	-	EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##NM_139161|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_174881|CRB3|92359|crumbs homolog 3 (Drosophila)##AK292956|CRB3|92359|crumbs homolog 3 (Drosophila)##AF503290|CRB3|92359|crumbs homolog 3 (Drosophila)##AY358684|CRB3|92359|crumbs homolog 3 (Drosophila)##BC018409|CRB3|92359|crumbs homolog 3 (Drosophila)##AK000653|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule	0.0	0.0	
chr2	25825069	25825175	reg1014609.p1	3.859	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-259660	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-259759	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-259794	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	71279	-	AB385496 TSC_hg19_v1_chr2_-_26101159	276007	-	TSC_hg19_v1_chr2_-_26101174 AB084279	276051	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	0.969776	0.0	denovo_WM_7:43:0.937
chr5	10553061	10553127	reg1002098.p1	3.859	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-110942	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-111091	+	TSC_hg19_v1_chr5_+_10354003 AB385356	-199086	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	11348	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	208165	-	TSC_hg19_v1_chr5_-_10761341 BC002726	208248	-	AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein	0.0	0.0	
chr1	16735233	16735315	reg1003326.p1	3.858	+	NM_001114600 NM_015609 BC023988 TSC_hg19_v1_chr1_+_16693726 BX640985 AJ295987 AB097042 AB097043 AB097046 AK297926 AK298576 AK308787 AL050028 AK316205 BC065538 AB097044 AB097045 BC010631	-41603	+	TSC_hg19_v1_chr1_-_16678969 BC063864 NM_018994 AK055598 BC043410	-56326	-	TSC_hg19_v1_chr1_-_16678922 AK310671	-56356	-	AK128106 BC022039 AK311614 AY327405 NM_198546	28628	-	NM_001145277 NM_001145278 NM_018090 TSC_hg19_v1_chr1_+_16767200	31910	+	AK223344 TSC_hg19_v1_chr1_+_16767218 AK300764 AK302227 AK023545 BC018914	31951	+	NM_001114600|C1orf144|26099|chromosome 1 open reading frame 144##NM_015609|C1orf144|26099|chromosome 1 open reading frame 144##BC023988|C1orf144|26099|chromosome 1 open reading frame 144##BX640985|C1orf144|26099|chromosome 1 open reading frame 144##AJ295987|C1orf144|26099|chromosome 1 open reading frame 144##AB097042|C1orf144|26099|chromosome 1 open reading frame 144##AB097043|C1orf144|26099|chromosome 1 open reading frame 144##AB097046|C1orf144|26099|chromosome 1 open reading frame 144##AK297926|C1orf144|26099|chromosome 1 open reading frame 144##AK298576|C1orf144|26099|chromosome 1 open reading frame 144##AK308787|C1orf144|26099|chromosome 1 open reading frame 144##AL050028|C1orf144|26099|chromosome 1 open reading frame 144##AK316205|C1orf144|26099|chromosome 1 open reading frame 144##BC065538|C1orf144|26099|chromosome 1 open reading frame 144##AB097044|C1orf144|26099|chromosome 1 open reading frame 144##AB097045|C1orf144|26099|chromosome 1 open reading frame 144##BC010631|C1orf144|26099|chromosome 1 open reading frame 144##BC063864|FBXO42|54455|F-box protein 42##NM_018994|FBXO42|54455|F-box protein 42##AK055598|FBXO42|54455|F-box protein 42##BC043410|FBXO42|54455|F-box protein 42##AK310671|FBXO42|54455|F-box protein 42##AK128106|SPATA21|374955|spermatogenesis associated 21##BC022039|SPATA21|374955|spermatogenesis associated 21##AK311614|SPATA21|374955|spermatogenesis associated 21##AY327405|SPATA21|374955|spermatogenesis associated 21##NM_198546|SPATA21|374955|spermatogenesis associated 21##NM_001145277|NECAP2|55707|NECAP endocytosis associated 2##NM_001145278|NECAP2|55707|NECAP endocytosis associated 2##NM_018090|NECAP2|55707|NECAP endocytosis associated 2##AK223344|NECAP2|55707|NECAP endocytosis associated 2##AK300764|NECAP2|55707|NECAP endocytosis associated 2##AK302227|NECAP2|55707|NECAP endocytosis associated 2##AK023545|NECAP2|55707|NECAP endocytosis associated 2##BC018914|NECAP2|55707|NECAP endocytosis associated 2	0.993773	0.0	
chr17	33469299	33469403	reg1017339.p1	3.858	+	AB209111 BC002884 TSC_hg19_v1_chr17_-_33469323 BC012075 AK303253 AK001320 AK304508 NM_001014445 NM_018096	-31	-	AK313775 NM_017559 BC024002 AK225743 AL133054 EU831600 EU831687	-20697	+	TSC_hg19_v1_chr17_-_33446880 NM_001142571 NM_002878 NM_133629	-22476	-	AK095929 BX647642 NM_001033576 NM_173167 AL832355 AL833281	5496	+	AK097473 BC136422 BC140700 NM_152462	52042	-	TSC_hg19_v1_chr17_+_33570090 NM_144975 AK303632 BX647942 AK054668 AK303299 BC021238	100742	+	AB209111|NLE1|54475|notchless homolog 1 (Drosophila)##BC002884|NLE1|54475|notchless homolog 1 (Drosophila)##BC012075|NLE1|54475|notchless homolog 1 (Drosophila)##AK303253|NLE1|54475|notchless homolog 1 (Drosophila)##AK001320|NLE1|54475|notchless homolog 1 (Drosophila)##AK304508|NLE1|54475|notchless homolog 1 (Drosophila)##NM_001014445|NLE1|54475|notchless homolog 1 (Drosophila)##NM_018096|NLE1|54475|notchless homolog 1 (Drosophila)##AK313775|FNDC8|54752|fibronectin type III domain containing 8##NM_017559|FNDC8|54752|fibronectin type III domain containing 8##BC024002|FNDC8|54752|fibronectin type III domain containing 8##AK225743|FNDC8|54752|fibronectin type III domain containing 8##AL133054|FNDC8|54752|fibronectin type III domain containing 8##EU831600|FNDC8|54752|fibronectin type III domain containing 8##EU831687|FNDC8|54752|fibronectin type III domain containing 8##NM_001142571|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_002878|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##NM_133629|RAD51D|5892|RAD51 homolog D (S. cerevisiae)##AK095929|UNC45B|146862|unc-45 homolog B (C. elegans)##BX647642|UNC45B|146862|unc-45 homolog B (C. elegans)##NM_001033576|UNC45B|146862|unc-45 homolog B (C. elegans)##NM_173167|UNC45B|146862|unc-45 homolog B (C. elegans)##AL832355|UNC45B|146862|unc-45 homolog B (C. elegans)##AL833281|UNC45B|146862|unc-45 homolog B (C. elegans)##AK097473|SLC35G3|146861|solute carrier family 35, member G3##BC136422|SLC35G3|146861|solute carrier family 35, member G3##BC140700|SLC35G3|146861|solute carrier family 35, member G3##NM_152462|SLC35G3|146861|solute carrier family 35, member G3##NM_144975|SLFN5|162394|schlafen family member 5##AK303632|SLFN5|162394|schlafen family member 5##BX647942|SLFN5|162394|schlafen family member 5##AK054668|SLFN5|162394|schlafen family member 5##AK303299|SLFN5|162394|schlafen family member 5##BC021238|SLFN5|162394|schlafen family member 5	0.0	0.570803	CTCF.p2:32:0.560
chr19	34732480	34732593	reg1016689.p1	3.858	+	TSC_hg19_v1_chr19_+_34710343 AL117499	-22156	+	TSC_hg19_v1_chr19_+_34663440 AL834398 AK027643 AB069974 AB069975	-69068	+	TSC_hg19_v1_chr19_+_34663429 AK300208	-69110	+	TSC_hg19_v1_chr19_+_34745535 NM_014686 AB002353 BX648432	12974	+	TSC_hg19_v1_chr19_+_34856083 NM_001184722 AK294396 NM_000175	123304	+	TSC_hg19_v1_chr19_+_34856150 AB209575 AK301103	123602	+	AL117499|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AL834398|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK027643|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069974|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AB069975|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##AK300208|LSM14A|26065|LSM14A, SCD6 homolog A (S. cerevisiae)##NM_014686|KIAA0355|9710|KIAA0355##AB002353|KIAA0355|9710|KIAA0355##NM_001184722|GPI|2821|glucose-6-phosphate isomerase##AK294396|GPI|2821|glucose-6-phosphate isomerase##NM_000175|GPI|2821|glucose-6-phosphate isomerase##AB209575|GPI|2821|glucose-6-phosphate isomerase##AK301103|GPI|2821|glucose-6-phosphate isomerase	0.0	0.0	
chr4	139111596	139111704	reg1008595.p1	3.858	+	AB046782 NM_019035 TSC_hg19_v1_chr4_-_138453642 AK298607 BC071581 BX647786	-658008	-	AK297122 BC022227 TSC_hg19_v1_chr4_-_138453618	-658058	-	NM_001114734 TSC_hg19_v1_chr4_-_135122935	-3988732	-	AB385133 AJ277882 AB040875 BC012087 AK314855 AF252872 AB026891 AF200708 TSC_hg19_v1_chr4_-_139163504 AK290359 NM_014331	51714	-	TSC_hg19_v1_chr4_+_139936938 AF183961 NM_012118 BC021963 BC023512 BC077723 BC113494 BC113500	825343	+	CU688002 CU689992 DQ890870 DQ894026 TSC_hg19_v1_chr4_-_140005382 AK301307 AF256223	893753	-	AB046782|PCDH18|54510|protocadherin 18##NM_019035|PCDH18|54510|protocadherin 18##AK298607|PCDH18|54510|protocadherin 18##BC071581|PCDH18|54510|protocadherin 18##BX647786|PCDH18|54510|protocadherin 18##AK297122|PCDH18|54510|protocadherin 18##BC022227|PCDH18|54510|protocadherin 18##NM_001114734|PABPC4L|132430|poly(A) binding protein, cytoplasmic 4-like##AJ277882|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB040875|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##BC012087|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK314855|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF252872|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AB026891|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF200708|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AK290359|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##NM_014331|SLC7A11|23657|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11##AF183961|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##NM_012118|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC021963|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC023512|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC077723|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113494|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##BC113500|CCRN4L|25819|CCR4 carbon catabolite repression 4-like (S. cerevisiae)##DQ890870|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##DQ894026|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AK301307|ELF2|1998|E74-like factor 2 (ets domain transcription factor)##AF256223|ELF2|1998|E74-like factor 2 (ets domain transcription factor)	0.0	0.0	
chr5	58090255	58090388	reg1014689.p1	3.858	+	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	-211402	+	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	-303027	+	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	-334385	-	BC036319 NM_001197223	205437	-	U50157 U50158 TSC_hg19_v1_chr5_-_58335364 AF012074 NM_001197221 NM_001197222 U79571	245057	-	TSC_hg19_v1_chr5_-_58571918 AY245867 NM_001197220	481609	-	AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##BC036319|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197223|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50157|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U50158|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF012074|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197221|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197222|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##U79571|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AY245867|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001197220|PDE4D|5144|phosphodiesterase 4D, cAMP-specific	0.993327	0.0	denovo_WM_7:28:0.823
chr9	33249062	33249220	reg1015090.p1	3.858	+	TSC_hg19_v1_chr9_+_33240166 AF048700 BC110068 NM_014471	-8961	+	NM_001497 TSC_hg19_v1_chr9_-_33167361	-81780	-	TSC_hg19_v1_chr9_-_33167335 BC045773	-81815	-	AM392568 BC014774 TSC_hg19_v1_chr9_-_33264707 AK096038 AK316577 AF116273 BC002407 AK222749 AF022224 U46917 BC001936 Z35491 NM_001172415 NM_004323	15467	-	NM_001195536 NM_016410 TSC_hg19_v1_chr9_+_33265035 BC016698 BC007457 AK315455 AK024753 BC018603 BC021168 AK295744	15815	+	TSC_hg19_v1_chr9_+_33265046 BC006974 BC020796 AF132968 AF161525 AB528724 CU675479 DQ893179 DQ896479 DQ896480	15918	+	AF048700|SPINK4|27290|serine peptidase inhibitor, Kazal type 4##BC110068|SPINK4|27290|serine peptidase inhibitor, Kazal type 4##NM_014471|SPINK4|27290|serine peptidase inhibitor, Kazal type 4##NM_001497|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##BC045773|B4GALT1|2683|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1##AM392568|BAG1|573|BCL2-associated athanogene##BC014774|BAG1|573|BCL2-associated athanogene##AK096038|BAG1|573|BCL2-associated athanogene##AK316577|BAG1|573|BCL2-associated athanogene##AF116273|BAG1|573|BCL2-associated athanogene##AK222749|BAG1|573|BCL2-associated athanogene##AF022224|BAG1|573|BCL2-associated athanogene##U46917|BAG1|573|BCL2-associated athanogene##BC001936|BAG1|573|BCL2-associated athanogene##Z35491|BAG1|573|BCL2-associated athanogene##NM_001172415|BAG1|573|BCL2-associated athanogene##NM_004323|BAG1|573|BCL2-associated athanogene##NM_001195536|CHMP5|51510|charged multivesicular body protein 5##NM_016410|CHMP5|51510|charged multivesicular body protein 5##BC016698|CHMP5|51510|charged multivesicular body protein 5##BC007457|CHMP5|51510|charged multivesicular body protein 5##AK315455|CHMP5|51510|charged multivesicular body protein 5##AK024753|CHMP5|51510|charged multivesicular body protein 5##BC018603|CHMP5|51510|charged multivesicular body protein 5##BC021168|CHMP5|51510|charged multivesicular body protein 5##AK295744|CHMP5|51510|charged multivesicular body protein 5##BC006974|CHMP5|51510|charged multivesicular body protein 5##BC020796|CHMP5|51510|charged multivesicular body protein 5##AF132968|CHMP5|51510|charged multivesicular body protein 5##AF161525|CHMP5|51510|charged multivesicular body protein 5##DQ893179|CHMP5|51510|charged multivesicular body protein 5##DQ896479|CHMP5|51510|charged multivesicular body protein 5##DQ896480|CHMP5|51510|charged multivesicular body protein 5	0.997736	0.0	denovo_WM_7:20:0.834
chr12	4508027	4508093	reg1012999.p1	3.857	+	TSC_hg19_v1_chr12_-_4488723 AB037973 AY358323 BC096713 BC098147 BC098252 BC069333 AB047858 AF263537 NM_020638	-19260	-	TSC_hg19_v1_chr12_+_4430378 NM_020375 AJ272206 AK313226 AY425618 BC012340 AB528081 AM392615	-77669	+	TSC_hg19_v1_chr12_+_4382962 NM_001759 AK223577 D13639 BC089384 BC010958 AK291146 X68452 M90813 AB385212 DQ892845 DQ896091 BT019847	-125016	+	BC121097 BC121098 NM_020996 X63454	46719	-	TSC_hg19_v1_chr12_-_4647633 AJ272205 BC016908	139559	-	AL834377 NM_020374 TSC_hg19_v1_chr12_-_4647648	139586	-	AB037973|FGF23|8074|fibroblast growth factor 23##AY358323|FGF23|8074|fibroblast growth factor 23##BC096713|FGF23|8074|fibroblast growth factor 23##BC098147|FGF23|8074|fibroblast growth factor 23##BC098252|FGF23|8074|fibroblast growth factor 23##BC069333|FGF23|8074|fibroblast growth factor 23##AB047858|FGF23|8074|fibroblast growth factor 23##AF263537|FGF23|8074|fibroblast growth factor 23##NM_020638|FGF23|8074|fibroblast growth factor 23##NM_020375|C12orf5|57103|chromosome 12 open reading frame 5##AJ272206|C12orf5|57103|chromosome 12 open reading frame 5##AK313226|C12orf5|57103|chromosome 12 open reading frame 5##AY425618|C12orf5|57103|chromosome 12 open reading frame 5##BC012340|C12orf5|57103|chromosome 12 open reading frame 5##AM392615|C12orf5|57103|chromosome 12 open reading frame 5##NM_001759|CCND2|894|cyclin D2##AK223577|CCND2|894|cyclin D2##D13639|CCND2|894|cyclin D2##BC089384|CCND2|894|cyclin D2##BC010958|CCND2|894|cyclin D2##AK291146|CCND2|894|cyclin D2##X68452|CCND2|894|cyclin D2##M90813|CCND2|894|cyclin D2##DQ892845|CCND2|894|cyclin D2##DQ896091|CCND2|894|cyclin D2##BT019847|CCND2|894|cyclin D2##BC121097|FGF6|2251|fibroblast growth factor 6##BC121098|FGF6|2251|fibroblast growth factor 6##NM_020996|FGF6|2251|fibroblast growth factor 6##X63454|FGF6|2251|fibroblast growth factor 6##AJ272205|C12orf4|57102|chromosome 12 open reading frame 4##BC016908|C12orf4|57102|chromosome 12 open reading frame 4##AL834377|C12orf4|57102|chromosome 12 open reading frame 4##NM_020374|C12orf4|57102|chromosome 12 open reading frame 4	0.045776	0.0	
chr15	22552670	22552850	reg1018773.p2	3.857	+	DQ524033 DQ454451 TSC_hg19_v1_chr15_-_22473107 DQ454627 AF343362 EU433867 DQ454583 DQ454461 DQ454478 DQ454710 GQ232839 DQ454494 DQ454810 DQ454920 DQ454517 DQ454648 DQ454831 DQ454837 DQ454839 DQ454830 EF091921 EU350427 GQ232820 GQ232886 DQ454775 EU099074 EU099080 EU099197 DQ454762 AM279532 S79246 FJ385352 FJ385386 FJ385412 U86668 S73132 DQ454486 DQ454484 DQ523962 DQ523967 DQ524021 DQ524117 DQ524132 DQ524138 HM996399 DQ926110 HM995525 AB363221 AJ132847 AJ300792 AY686939 AY941876 AY941978 HM995325 HM995448 HM995452 HM995524 HM995543 HM995544 HM995546 HM995547 HM995794 HM995826 AB063656 AB063670 AB363087 AF062233 AJ244946 AJ245002 AJ245015 AJ245026 AJ245030 AJ279514 AJ279520 AJ279522 AJ579204 AY670752 AY670765 AY670783 AY671055 AY671074 AY671080 AY671081 AY671306 AY671333 AY671362 AY671391 AY671498 AY671678 AY671740 AY671743 AY671757 AY941972 AY941973 AY941975 AY941977 AY941979 DQ431529 DQ431542 HQ689717 U00532 U96389 Z46285 AY686870 AY686907 AY686931 AY944698 AY944714 AY944717 DQ535422 EF178066 EF178072 AY671309 X54445 AY671174 AY671312 AF062120 AF062232 X65905 X65906 X65908 X65909 X65910 Z75399	-79538	-	BC136597 BC136598 NM_001005241 DQ786223	-170315	+	BC136985 NM_001004719	-184283	+	AK097517 NM_001001413	183485	+	NM_001102610 NM_052903 TSC_hg19_v1_chr15_+_22833498 BC039271 AF272884 AB067486 AK056416 AK289859 AK310897 BC071560	280710	+	TSC_hg19_v1_chr15_+_22892666 AY763577	339839	+	BC136597|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136598|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##NM_001005241|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##AK097517|GOLGA6L1|283767|golgin A6 family-like 1##NM_001001413|GOLGA6L1|283767|golgin A6 family-like 1##NM_001102610|TUBGCP5|114791|tubulin, gamma complex associated protein 5##NM_052903|TUBGCP5|114791|tubulin, gamma complex associated protein 5##BC039271|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AF272884|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AB067486|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK056416|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK289859|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK310897|TUBGCP5|114791|tubulin, gamma complex associated protein 5##BC071560|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AY763577|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1	1.838793	0.0	denovo_WM_7:34:0.551	denovo_WM_7:35:0.296	denovo_WM_7:49:0.287	denovo_WM_7:50:0.582
chr15	85290311	85290461	reg1015740.p1	3.857	+	TSC_hg19_v1_chr15_-_85259675 BC014508 NM_014300 AK314146	-30705	-	AF090315 AF108945 CR457127 DQ891826 AF087906 AK300693 TSC_hg19_v1_chr15_-_85259371 AK223224 BC000359 AF061737	-31040	-	BC007407 BC007431 NM_021077 NM_205858	-88589	-	TSC_hg19_v1_chr15_+_85291590 D86966	1196	+	TSC_hg19_v1_chr15_+_85291820 NM_014630	1439	+	TSC_hg19_v1_chr15_+_85291875 BC094688	1476	+	BC014508|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##NM_014300|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK314146|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF090315|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF108945|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##CR457127|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##DQ891826|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF087906|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK300693|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AK223224|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC000359|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##AF061737|SEC11A|23478|SEC11 homolog A (S. cerevisiae)##BC007407|NMB|4828|neuromedin B##BC007431|NMB|4828|neuromedin B##NM_021077|NMB|4828|neuromedin B##NM_205858|NMB|4828|neuromedin B##D86966|ZNF592|9640|zinc finger protein 592##NM_014630|ZNF592|9640|zinc finger protein 592##BC094688|ZNF592|9640|zinc finger protein 592	1.984881	0.0	denovo_WM_7:67:0.517	denovo_WM_7:70:0.327	denovo_WM_7:-101:0.561	denovo_WM_7:-102:0.281
chr19	40191957	40192111	reg1018321.p1	3.857	+	FJ613352 NM_001190441	-45489	+	BC066304 AY055826 BC069312 NM_013268 FJ613336 FJ613337 FJ613338 AF117383 CU686743	-98849	+	TSC_hg19_v1_chr19_-_40030800 AY251272 BC030137 AK128468 NM_153232	-161214	-	AF267852 AF367430 AF367431 AF367432 NM_020129 NM_203471 BC022257 AK312040 FJ613341 FJ613342	3009	+	FJ613334 BC119711 BC119712 FJ613335 L01664 NM_001828	36605	-	NM_001143832	75199	+	FJ613352|LGALS16|148003|lectin, galactoside-binding, soluble, 16##NM_001190441|LGALS16|148003|lectin, galactoside-binding, soluble, 16##BC066304|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AY055826|LGALS13|29124|lectin, galactoside-binding, soluble, 13##BC069312|LGALS13|29124|lectin, galactoside-binding, soluble, 13##NM_013268|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613336|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613337|LGALS13|29124|lectin, galactoside-binding, soluble, 13##FJ613338|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AF117383|LGALS13|29124|lectin, galactoside-binding, soluble, 13##AY251272|EID2|163126|EP300 interacting inhibitor of differentiation 2##BC030137|EID2|163126|EP300 interacting inhibitor of differentiation 2##AK128468|EID2|163126|EP300 interacting inhibitor of differentiation 2##NM_153232|EID2|163126|EP300 interacting inhibitor of differentiation 2##AF267852|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367430|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367431|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AF367432|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_020129|LGALS14|56891|lectin, galactoside-binding, soluble, 14##NM_203471|LGALS14|56891|lectin, galactoside-binding, soluble, 14##BC022257|LGALS14|56891|lectin, galactoside-binding, soluble, 14##AK312040|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613341|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613342|LGALS14|56891|lectin, galactoside-binding, soluble, 14##FJ613334|CLC|1178|Charcot-Leyden crystal protein##BC119711|CLC|1178|Charcot-Leyden crystal protein##BC119712|CLC|1178|Charcot-Leyden crystal protein##FJ613335|CLC|1178|Charcot-Leyden crystal protein##L01664|CLC|1178|Charcot-Leyden crystal protein##NM_001828|CLC|1178|Charcot-Leyden crystal protein##NM_001143832|LEUTX|342900|leucine twenty homeobox	0.011344	0.0	
chr3	23482263	23482363	reg1012886.p2	3.857	+	TSC_hg19_v1_chr3_+_23244727 AK057886 NM_152653 BC022332	-237558	+	TSC_hg19_v1_chr3_+_23244600 AK307075	-237730	+	AK310298 TSC_hg19_v1_chr3_-_22414124	-1068179	-	TSC_hg19_v1_chr3_+_23847445 NM_003341 NM_182666 BC009139	365097	+	AK314854 TSC_hg19_v1_chr3_+_23847474	365161	+	AK295354 NM_001202476	369620	+	AK057886|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##NM_152653|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##BC022332|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##AK307075|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##AK310298|ZNF385D|79750|zinc finger protein 385D##NM_003341|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_182666|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##BC009139|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##AK314854|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_001202476|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1	0.999124	0.0	denovo_WM_7:-25:0.311	denovo_WM_7:-28:0.456
chr3	88191299	88191460	reg1004810.p1	3.857	+	AF543494 NM_018293	-3118	+	BC052980 TSC_hg19_v1_chr3_-_88108150 AL117392 NM_001008390 NM_003663	-83236	-	NM_000866	-159654	+	NM_001195308 BC005222	7645	-	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	7649	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	965342	+	AF543494|ZNF654|55279|zinc finger protein 654##NM_018293|ZNF654|55279|zinc finger protein 654##BC052980|CGGBP1|8545|CGG triplet repeat binding protein 1##AL117392|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_001008390|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_003663|CGGBP1|8545|CGG triplet repeat binding protein 1##NM_000866|HTR1F|3355|5-hydroxytryptamine (serotonin) receptor 1F##NM_001195308|CGGBP1|8545|CGG triplet repeat binding protein 1##BC005222|CGGBP1|8545|CGG triplet repeat binding protein 1##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3	0.821062	0.0	denovo_WM_7:65:0.352
chr7	106808993	106809104	reg1017691.p1	3.857	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-123845	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-303119	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-303274	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	391	+	NM_005295 AK122621 AK307393	301454	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	395362	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	0.0	0.0	
chr14	96590131	96590311	reg1014380.p2	3.856	+	TSC_hg19_v1_chr14_+_96505698 NM_001252507 BC043593 AB621830 AK001590	-84575	+	AK023027 TSC_hg19_v1_chr14_+_96342762	-247476	+	CR456796 DQ892500 DQ895713 BC003574 BC003574 BC005831 BC005831 X82240 X82240 BC014024 BC014024 NM_001098725 NM_021966	-409754	-	CR749338 U35875 TSC_hg19_v1_chr14_+_96671131 NM_000623	80856	+	TSC_hg19_v1_chr14_+_96671180 AK299316 AK311049 M88714	80975	+	AK291970 AK309528 NM_000710 TSC_hg19_v1_chr14_+_96722546 U30271 AJ238044	132333	+	NM_001252507|C14orf132|56967|chromosome 14 open reading frame 132##BC043593|C14orf132|56967|chromosome 14 open reading frame 132##AB621830|C14orf132|56967|chromosome 14 open reading frame 132##AK001590|C14orf132|56967|chromosome 14 open reading frame 132##AK023027|LOC100507043|100507043|uncharacterized LOC100507043##CR456796|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ892500|TCL1A|8115|T-cell leukemia/lymphoma 1A##DQ895713|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC003574|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC005831|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##X82240|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##BC014024|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_001098725|TCL1A|8115|T-cell leukemia/lymphoma 1A##NM_021966|TCL1A|8115|T-cell leukemia/lymphoma 1A##CR749338|BDKRB2|624|bradykinin receptor B2##NM_000623|BDKRB2|624|bradykinin receptor B2##AK299316|BDKRB2|624|bradykinin receptor B2##AK311049|BDKRB2|624|bradykinin receptor B2##M88714|BDKRB2|624|bradykinin receptor B2##AK291970|BDKRB1|623|bradykinin receptor B1##AK309528|BDKRB1|623|bradykinin receptor B1##NM_000710|BDKRB1|623|bradykinin receptor B1##U30271|BDKRB1|623|bradykinin receptor B1##AJ238044|BDKRB1|623|bradykinin receptor B1	0.0	0.010205	
chr16	10008011	10008191	reg1002459.p1	3.856	+	TSC_hg19_v1_chr16_+_9185577 BC113570	-822498	+	TSC_hg19_v1_chr16_+_9185545 NM_014117	-822561	+	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	-950806	-	BC143273 U09002 NM_001134408	267732	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	268087	-	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	268576	-	BC113570|C16orf72|29035|chromosome 16 open reading frame 72##NM_014117|C16orf72|29035|chromosome 16 open reading frame 72##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A	0.0	0.0	
chr16	89400233	89400354	reg1005776.p1	3.856	+	AK293862 NM_001242885	-12753	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-49337	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-50219	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	156638	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	174521	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	226772	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.0	0.019715	
chr17	59308475	59308584	reg1015743.p2	3.856	+	TSC_hg19_v1_chr17_+_58755255 NM_001099432 NM_017679 AK304791 AK225757 BC017390 AK314744 AF361219 BC117275 BC143386 BC143387 AK025510	-553316	+	TSC_hg19_v1_chr17_+_58677710 BC016480 BC042418 BC032826 BC033893 DQ891047 EU176552 BT009780	-630840	+	TSC_hg19_v1_chr17_+_58677553 BC060877 NM_003620 AK312902 AK299773 U78305	-630985	+	TSC_hg19_v1_chr17_+_59477203 BC052566 NM_005994 AK127429 BC070054	168707	+	TSC_hg19_v1_chr17_+_59477477 U28049	168967	+	TSC_hg19_v1_chr17_+_59477713 AL832900 AB209378	169188	+	NM_001099432|BCAS3|54828|breast carcinoma amplified sequence 3##NM_017679|BCAS3|54828|breast carcinoma amplified sequence 3##AK304791|BCAS3|54828|breast carcinoma amplified sequence 3##AK225757|BCAS3|54828|breast carcinoma amplified sequence 3##BC017390|BCAS3|54828|breast carcinoma amplified sequence 3##AK314744|BCAS3|54828|breast carcinoma amplified sequence 3##AF361219|BCAS3|54828|breast carcinoma amplified sequence 3##BC117275|BCAS3|54828|breast carcinoma amplified sequence 3##BC143386|BCAS3|54828|breast carcinoma amplified sequence 3##BC143387|BCAS3|54828|breast carcinoma amplified sequence 3##AK025510|BCAS3|54828|breast carcinoma amplified sequence 3##BC016480|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC042418|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC032826|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC033893|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##DQ891047|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##EU176552|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BT009780|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC060877|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##NM_003620|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK312902|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##AK299773|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##U78305|PPM1D|8493|protein phosphatase, Mg2+/Mn2+ dependent, 1D##BC052566|TBX2|6909|T-box 2##NM_005994|TBX2|6909|T-box 2##BC070054|TBX2|6909|T-box 2##U28049|TBX2|6909|T-box 2##AL832900|TBX2|6909|T-box 2##AB209378|TBX2|6909|T-box 2	0.0	0.0	
chr1	83864029	83864171	reg1014551.p1	3.856	+	AF104266 AF104938 AF104939 NM_012302	-1598019	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	-2092173	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-4391673	-	AK097722 TSC_hg19_v1_chr1_-_84326308	462168	-	TSC_hg19_v1_chr1_-_84326677 BC036594	462576	-	AK126792 BC048970 BC032829 TSC_hg19_v1_chr1_-_84464848 BC060878 BC028350 NM_024686	600696	-	AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK126792|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC048970|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC032829|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC060878|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##BC028350|TTLL7|79739|tubulin tyrosine ligase-like family, member 7##NM_024686|TTLL7|79739|tubulin tyrosine ligase-like family, member 7	0.873451	0.0	denovo_WM_7:41:0.208	denovo_WM_7:42:0.470
chr19	39074313	39074407	reg1012120.p2	3.856	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-150016	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-157488	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-180459	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	34228	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	35353	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	35456	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.0	0.0	
chr3	125226024	125226135	reg1018965.p2	3.856	+	AF039019 AL833616 AF432210 AJ236885 L04282 BC035591 BC018971 AK314203 TSC_hg19_v1_chr3_-_125094153 BC050260 NM_021964	-131979	-	AK123001 TSC_hg19_v1_chr3_-_124931591 AX721165 AK131070 NM_024628	-294494	-	AF345197 HQ258349 BC126158 BC126160 AF390442 NM_001195483	-295862	-	AF065485 TSC_hg19_v1_chr3_-_125239047 CU676320 DQ892131 DQ895325 AB528425 AK001835 AK298972 BC018762 BC021002	12952	-	TSC_hg19_v1_chr3_-_125239050 NM_003794	12974	-	TSC_hg19_v1_chr3_-_125314371 NM_022776	88294	-	AF039019|ZNF148|7707|zinc finger protein 148##AL833616|ZNF148|7707|zinc finger protein 148##AF432210|ZNF148|7707|zinc finger protein 148##AJ236885|ZNF148|7707|zinc finger protein 148##L04282|ZNF148|7707|zinc finger protein 148##BC035591|ZNF148|7707|zinc finger protein 148##BC018971|ZNF148|7707|zinc finger protein 148##AK314203|ZNF148|7707|zinc finger protein 148##BC050260|ZNF148|7707|zinc finger protein 148##NM_021964|ZNF148|7707|zinc finger protein 148##AK123001|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_024628|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF345197|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##HQ258349|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126158|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##BC126160|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF390442|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##NM_001195483|SLC12A8|84561|solute carrier family 12 (potassium/chloride transporters), member 8##AF065485|SNX4|8723|sorting nexin 4##DQ892131|SNX4|8723|sorting nexin 4##DQ895325|SNX4|8723|sorting nexin 4##AK001835|SNX4|8723|sorting nexin 4##AK298972|SNX4|8723|sorting nexin 4##BC018762|SNX4|8723|sorting nexin 4##NM_003794|SNX4|8723|sorting nexin 4##NM_022776|OSBPL11|114885|oxysterol binding protein-like 11	1.003832	0.0	
chr6	107970321	107970432	reg1012577.p1	3.856	+	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	-158948	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	-189646	-	BC131628 NM_001080450	-534741	-	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	175140	-	AF100141 CU690382 CU690568 BC001153 TSC_hg19_v1_chr6_-_108279282 AK074835	308881	-	TSC_hg19_v1_chr6_-_108279316 AJ011779	308936	-	NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AF100141|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC001153|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK074835|SEC63|11231|SEC63 homolog (S. cerevisiae)##AJ011779|SEC63|11231|SEC63 homolog (S. cerevisiae)	1.621282	0.0	denovo_WM_7:0:0.652	denovo_WM_7:14:0.624
chr14	50336753	50336933	reg1009201.p1	3.855	+	TSC_hg19_v1_chr14_-_50329567 X02067	-7247	-	TSC_hg19_v1_chr14_-_50319530 AK295010 AK293236 BC006001 BC056687 NM_004713	-17310	-	TSC_hg19_v1_chr14_-_50319497 AK304695 AK308537	-17347	-	TSC_hg19_v1_chr14_+_50359731 NM_001663	22887	+	AK313790 TSC_hg19_v1_chr14_+_50359816 BC008918	22975	+	TSC_hg19_v1_chr14_+_50359832 BC002952 M57763	22990	+	X02067|RN7SL2|378706|RNA, 7SL, cytoplasmic 2##AK295010|NEMF|9147|nuclear export mediator factor##AK293236|NEMF|9147|nuclear export mediator factor##BC006001|NEMF|9147|nuclear export mediator factor##BC056687|NEMF|9147|nuclear export mediator factor##NM_004713|NEMF|9147|nuclear export mediator factor##AK304695|NEMF|9147|nuclear export mediator factor##AK308537|NEMF|9147|nuclear export mediator factor##NM_001663|ARF6|382|ADP-ribosylation factor 6##AK313790|ARF6|382|ADP-ribosylation factor 6##BC008918|ARF6|382|ADP-ribosylation factor 6##BC002952|ARF6|382|ADP-ribosylation factor 6##M57763|ARF6|382|ADP-ribosylation factor 6	0.0	0.0	
chr2	20861346	20861495	reg1018366.p2	3.855	+	TSC_hg19_v1_chr2_-_20850859 AB527583 CU691206 CU693338 BC057389 BC038847 BC050636 BC027947 AK024311 AK314383 NM_022460	-10572	-	AK310813 AK312487 AK124398 AK297495 AK309991 BC066954 NM_004040	-214588	+	TSC_hg19_v1_chr2_-_20550436 AK304198 AK093847 AX748335	-311001	-	AF522369 NM_182828	5003	+	TSC_hg19_v1_chr2_-_21022845 AK025473 NM_021925 AK299244 AK300494 BC017473 AK316162 AK299555 AK301493 AK316204 AK316310	161433	-	M36676 TSC_hg19_v1_chr2_-_21225654 M31030	364273	-	BC057389|HS1BP3|64342|HCLS1 binding protein 3##BC038847|HS1BP3|64342|HCLS1 binding protein 3##BC050636|HS1BP3|64342|HCLS1 binding protein 3##BC027947|HS1BP3|64342|HCLS1 binding protein 3##AK024311|HS1BP3|64342|HCLS1 binding protein 3##AK314383|HS1BP3|64342|HCLS1 binding protein 3##NM_022460|HS1BP3|64342|HCLS1 binding protein 3##AK312487|RHOB|388|ras homolog gene family, member B##AK124398|RHOB|388|ras homolog gene family, member B##BC066954|RHOB|388|ras homolog gene family, member B##NM_004040|RHOB|388|ras homolog gene family, member B##AK304198|PUM2|23369|pumilio homolog 2 (Drosophila)##AK093847|PUM2|23369|pumilio homolog 2 (Drosophila)##AF522369|GDF7|151449|growth differentiation factor 7##NM_182828|GDF7|151449|growth differentiation factor 7##AK025473|C2orf43|60526|chromosome 2 open reading frame 43##NM_021925|C2orf43|60526|chromosome 2 open reading frame 43##AK299244|C2orf43|60526|chromosome 2 open reading frame 43##AK300494|C2orf43|60526|chromosome 2 open reading frame 43##BC017473|C2orf43|60526|chromosome 2 open reading frame 43##AK316162|C2orf43|60526|chromosome 2 open reading frame 43##AK299555|C2orf43|60526|chromosome 2 open reading frame 43##AK301493|C2orf43|60526|chromosome 2 open reading frame 43##AK316204|C2orf43|60526|chromosome 2 open reading frame 43##AK316310|C2orf43|60526|chromosome 2 open reading frame 43##M36676|APOB|338|apolipoprotein B (including Ag(x) antigen)##M31030|APOB|338|apolipoprotein B (including Ag(x) antigen)	0.0	0.997142	CTCF.p2:0:0.997
chr3	9467078	9467258	reg1006843.p1	3.855	+	TSC_hg19_v1_chr3_+_9439556 AK092046 AX747332	-27594	+	TSC_hg19_v1_chr3_+_9439298 NM_001080517	-27807	+	AK093640 TSC_hg19_v1_chr3_-_9439124 AL110136	-28021	-	TSC_hg19_v1_chr3_+_9476522 AB384632	9348	+	BC113964 AY278320 NM_198560 TSC_hg19_v1_chr3_-_9595497	128295	-	NM_001077525 NM_001077526 NM_022485 TSC_hg19_v1_chr3_+_9691161 AK074792 AF289603 BC025952	223974	+	AK092046|SETD5|55209|SET domain containing 5##NM_001080517|SETD5|55209|SET domain containing 5##AK093640|LOC440944|440944|uncharacterized LOC440944##AL110136|LOC440944|440944|uncharacterized LOC440944##BC113964|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##AY278320|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_198560|LHFPL4|375323|lipoma HMGIC fusion partner-like 4##NM_001077525|MTMR14|64419|myotubularin related protein 14##NM_001077526|MTMR14|64419|myotubularin related protein 14##NM_022485|MTMR14|64419|myotubularin related protein 14##AK074792|MTMR14|64419|myotubularin related protein 14##AF289603|MTMR14|64419|myotubularin related protein 14##BC025952|MTMR14|64419|myotubularin related protein 14	0.99936	0.0	
chr9	112980103	112980175	reg1015240.p1	3.855	+	NM_001012993	-9727	-	NM_001136562 AK300427	-92347	+	TSC_hg19_v1_chr9_+_112810975 AK057098 AK304311	-169176	+	AF065241 AF276919 CR407665 AF313911 AY004872 AF085844 BC003377 J04026 BC054866 TSC_hg19_v1_chr9_-_113018788 X77584	38613	-	TSC_hg19_v1_chr9_-_113018817 BX647247 D28376 AK289508	38686	-	TSC_hg19_v1_chr9_-_113018882 NM_001244938 NM_003329	38760	-	NM_001012993|C9orf152|401546|chromosome 9 open reading frame 152##NM_001136562|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK300427|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK057098|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK304311|AKAP2|11217|A kinase (PRKA) anchor protein 2##AF065241|TXN|7295|thioredoxin##AF276919|TXN|7295|thioredoxin##CR407665|TXN|7295|thioredoxin##AF313911|TXN|7295|thioredoxin##AY004872|TXN|7295|thioredoxin##AF085844|TXN|7295|thioredoxin##BC003377|TXN|7295|thioredoxin##J04026|TXN|7295|thioredoxin##BC054866|TXN|7295|thioredoxin##X77584|TXN|7295|thioredoxin##BX647247|TXN|7295|thioredoxin##D28376|TXN|7295|thioredoxin##AK289508|TXN|7295|thioredoxin##NM_001244938|TXN|7295|thioredoxin##NM_003329|TXN|7295|thioredoxin	0.0	0.966163	CTCF.p2:-26:0.966
chr16	47010218	47010300	reg1018345.p1	3.854	+	TSC_hg19_v1_chr16_-_47007583 AK313031 BC013044 BC015809 NM_005880	-2664	-	CU677459 AF011793 AJ001309 TSC_hg19_v1_chr16_-_47007561	-2737	-	TSC_hg19_v1_chr16_-_47005340 Y13350	-4911	-	AY358718 BC108727 TSC_hg19_v1_chr16_-_47177852 BC098380	167587	-	TSC_hg19_v1_chr16_-_47177902 AK074937 NM_001201477 NM_018092	167663	-	TSC_hg19_v1_chr16_-_47494975 BC006321 DQ893514 DQ896493 AF503339 AK027596	484606	-	AK313031|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC013044|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##BC015809|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##NM_005880|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AJ001309|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##Y13350|DNAJA2|10294|DnaJ (Hsp40) homolog, subfamily A, member 2##AY358718|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC108727|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC098380|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##AK074937|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_001201477|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##NM_018092|NETO2|81831|neuropilin (NRP) and tolloid (TLL)-like 2##BC006321|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ893514|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##DQ896493|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AF503339|ITFG1|81533|integrin alpha FG-GAP repeat containing 1##AK027596|ITFG1|81533|integrin alpha FG-GAP repeat containing 1	0.02021	0.0	
chr17	1956955	1957135	reg1017405.p1	3.854	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-11737	+	TSC_hg19_v1_chr17_+_1933446 S81752 U34880 AF321876 NM_001383 AK314015 BC096086 BC096087 BC096088 BC096089 BC003099	-23624	+	BC128608 NM_178568	-28868	-	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	1353	+	DQ187313 NM_001098202	2512	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	249767	-	NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##S81752|DPH1|1801|DPH1 homolog (S. cerevisiae)##U34880|DPH1|1801|DPH1 homolog (S. cerevisiae)##AF321876|DPH1|1801|DPH1 homolog (S. cerevisiae)##NM_001383|DPH1|1801|DPH1 homolog (S. cerevisiae)##AK314015|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096086|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096087|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096088|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC096089|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC003099|DPH1|1801|DPH1 homolog (S. cerevisiae)##BC128608|RTN4RL1|146760|reticulon 4 receptor-like 1##NM_178568|RTN4RL1|146760|reticulon 4 receptor-like 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.0	0.261255	CTCF.p2:-12:0.261
chr17	67324027	67324147	reg1013883.p2	3.854	+	TSC_hg19_v1_chr17_-_67323275 BC029426 AJ512612 AJ275973 AK292592 NM_172232	-798	-	AK096664 NM_018672	-12314	-	AY028900 NM_080282 AY247065	-83117	-	AK290747 NM_002758 U39065 AK225719 X96757 BC012009	86789	+	TSC_hg19_v1_chr17_+_67498396 U39064	174393	+	BC030961 AF153815 AF153816 NM_018658 NM_170741 AK225944 AK290799	747343	+	BC029426|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ512612|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AJ275973|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AK292592|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_172232|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AK096664|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##NM_018672|ABCA5|23461|ATP-binding cassette, sub-family A (ABC1), member 5##AY028900|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##NM_080282|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##AY247065|ABCA10|10349|ATP-binding cassette, sub-family A (ABC1), member 10##AK290747|MAP2K6|5608|mitogen-activated protein kinase kinase 6##NM_002758|MAP2K6|5608|mitogen-activated protein kinase kinase 6##U39065|MAP2K6|5608|mitogen-activated protein kinase kinase 6##AK225719|MAP2K6|5608|mitogen-activated protein kinase kinase 6##X96757|MAP2K6|5608|mitogen-activated protein kinase kinase 6##BC012009|MAP2K6|5608|mitogen-activated protein kinase kinase 6##U39064|MAP2K6|5608|mitogen-activated protein kinase kinase 6##BC030961|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153815|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AF153816|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_018658|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##NM_170741|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK225944|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16##AK290799|KCNJ16|3773|potassium inwardly-rectifying channel, subfamily J, member 16	0.33778	0.0	denovo_WM_7:77:0.322
chr18	33077679	33077839	reg1008675.p1	3.854	+	BC130288 BC136314 AF492004 AF533251 AK055775 NM_145756	-120466	-	TSC_hg19_v1_chr18_-_32924421 AK291246 NM_006965	-153338	-	TSC_hg19_v1_chr18_-_32924385 AF038964 BC003566 U68536 BC016801	-153361	-	AK095502 AK300660 BC039404 NM_001098817 NM_194281	166	-	NM_020474 BC047746 U41514 AB529022 X85018	156820	+	NM_001201474 NM_001201475 NM_001201476 NM_031446 BC108730 TSC_hg19_v1_chr18_+_33552656 BC119765 BC119766 AK311536 AF277182 AF277189 BC025950	474908	+	BC130288|ZNF396|252884|zinc finger protein 396##BC136314|ZNF396|252884|zinc finger protein 396##AF492004|ZNF396|252884|zinc finger protein 396##AF533251|ZNF396|252884|zinc finger protein 396##AK055775|ZNF396|252884|zinc finger protein 396##NM_145756|ZNF396|252884|zinc finger protein 396##AK291246|ZNF24|7572|zinc finger protein 24##NM_006965|ZNF24|7572|zinc finger protein 24##AF038964|ZNF24|7572|zinc finger protein 24##BC003566|ZNF24|7572|zinc finger protein 24##U68536|ZNF24|7572|zinc finger protein 24##BC016801|ZNF24|7572|zinc finger protein 24##AK095502|INO80C|125476|INO80 complex subunit C##AK300660|INO80C|125476|INO80 complex subunit C##BC039404|INO80C|125476|INO80 complex subunit C##NM_001098817|INO80C|125476|INO80 complex subunit C##NM_194281|INO80C|125476|INO80 complex subunit C##NM_020474|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##BC047746|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##U41514|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##X85018|GALNT1|2589|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)##NM_001201474|C18orf21|83608|chromosome 18 open reading frame 21##NM_001201475|C18orf21|83608|chromosome 18 open reading frame 21##NM_001201476|C18orf21|83608|chromosome 18 open reading frame 21##NM_031446|C18orf21|83608|chromosome 18 open reading frame 21##BC108730|C18orf21|83608|chromosome 18 open reading frame 21##BC119765|C18orf21|83608|chromosome 18 open reading frame 21##BC119766|C18orf21|83608|chromosome 18 open reading frame 21##AF277182|C18orf21|83608|chromosome 18 open reading frame 21##AF277189|C18orf21|83608|chromosome 18 open reading frame 21##BC025950|C18orf21|83608|chromosome 18 open reading frame 21	0.0	0.0	
chr21	26945416	26945482	reg1008063.p2	3.854	+	TSC_hg19_v1_chr21_+_26934442 AF402776	-10977	+	TSC_hg19_v1_chr21_+_25801061 AK124194 BX538159	-1144381	+	TSC_hg19_v1_chr21_+_22370726 BC036088 U75330	-4574676	+	BC004896 AF109357 TSC_hg19_v1_chr21_-_26979794 AF239727 AK000458 AK225878 BC107719 NM_017446 NM_080794	34366	-	NM_021219 TSC_hg19_v1_chr21_+_27011719	66204	+	TSC_hg19_v1_chr21_+_27011769 AK312708 AY077698 AY016009 AX772824 AK294769	66388	+	AF402776|MIR155HG|114614|MIR155 host gene (non-protein coding)##AK124194|FLJ42200|400860|FLJ42200 protein##BC036088|NCAM2|4685|neural cell adhesion molecule 2##U75330|NCAM2|4685|neural cell adhesion molecule 2##BC004896|MRPL39|54148|mitochondrial ribosomal protein L39##AF109357|MRPL39|54148|mitochondrial ribosomal protein L39##AF239727|MRPL39|54148|mitochondrial ribosomal protein L39##AK000458|MRPL39|54148|mitochondrial ribosomal protein L39##AK225878|MRPL39|54148|mitochondrial ribosomal protein L39##BC107719|MRPL39|54148|mitochondrial ribosomal protein L39##NM_017446|MRPL39|54148|mitochondrial ribosomal protein L39##NM_080794|MRPL39|54148|mitochondrial ribosomal protein L39##NM_021219|JAM2|58494|junctional adhesion molecule 2##AK312708|JAM2|58494|junctional adhesion molecule 2##AY077698|JAM2|58494|junctional adhesion molecule 2##AY016009|JAM2|58494|junctional adhesion molecule 2##AX772824|JAM2|58494|junctional adhesion molecule 2##AK294769|JAM2|58494|junctional adhesion molecule 2	0.388997	0.0	denovo_WM_7:30:0.325
chr7	157131868	157132011	reg1013632.p2	3.854	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-2228	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-107933	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-200256	+	TSC_hg19_v1_chr7_+_157647233 BC034557	515335	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1248514	-	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	1365538	-	AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2	1.987962	0.0	denovo_WM_7:42:0.266	denovo_WM_7:43:0.717	denovo_WM_7:58:0.853
chr7	8166488	8166663	reg1017855.p1	3.854	+	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	-158142	+	BC009868 NM_002947	-408338	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-486202	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	135141	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	135216	-	TSC_hg19_v1_chr7_-_8302174 U38260 L01100 BC008640 BC005922 NM_004968	135598	-	NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa##U38260|ICA1|3382|islet cell autoantigen 1, 69kDa##L01100|ICA1|3382|islet cell autoantigen 1, 69kDa##BC008640|ICA1|3382|islet cell autoantigen 1, 69kDa##BC005922|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_004968|ICA1|3382|islet cell autoantigen 1, 69kDa	0.996796	0.0	denovo_WM_7:40:0.911
chr1	200835810	200835952	reg1005057.p2	3.853	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-127210	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-196773	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	-196852	-	BC126386 BC126388 AK315339 NM_005298	6242	+	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	24765	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	28116	+	AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106	0.0	0.0	
chr1	2479490	2479670	reg1001568.p1	3.853	+	BC087840 DQ272660 NM_001010926	-17897	-	TSC_hg19_v1_chr1_-_2458040 AL442072 BC043496 AK001644 AK223546 AK303127 AK309860 NM_018216 AK295301	-21516	-	DQ176850 NM_014638 BC144620	-71823	+	AK300515 NM_003820 U70321 AK303468 BC029848 BC002794 BC018882 U81232 AF153978 AK310076 AB208808 AY358879 CU678202 AB590572 DQ893000 DQ896755 AF373877 AF373878 CR456909	8373	+	TSC_hg19_v1_chr1_+_2518261 NM_001195736 NM_001195737 NM_001195738 NM_001195740 NM_001195741 NM_152371 AK303504 AK291908 AK298926 AK075273 AF425266 BC022547 AK057027 AK308034 AK316243	38608	+	TSC_hg19_v1_chr1_+_2518534 AK094901	38934	+	BC087840|HES5|388585|hairy and enhancer of split 5 (Drosophila)##DQ272660|HES5|388585|hairy and enhancer of split 5 (Drosophila)##NM_001010926|HES5|388585|hairy and enhancer of split 5 (Drosophila)##AL442072|PANK4|55229|pantothenate kinase 4##BC043496|PANK4|55229|pantothenate kinase 4##AK001644|PANK4|55229|pantothenate kinase 4##AK223546|PANK4|55229|pantothenate kinase 4##AK303127|PANK4|55229|pantothenate kinase 4##AK309860|PANK4|55229|pantothenate kinase 4##NM_018216|PANK4|55229|pantothenate kinase 4##AK295301|PANK4|55229|pantothenate kinase 4##DQ176850|PLCH2|9651|phospholipase C, eta 2##NM_014638|PLCH2|9651|phospholipase C, eta 2##BC144620|PLCH2|9651|phospholipase C, eta 2##AK300515|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##NM_003820|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U70321|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK303468|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC029848|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC002794|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##BC018882|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##U81232|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF153978|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AK310076|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AB208808|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AY358879|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ893000|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##DQ896755|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373877|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##AF373878|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##CR456909|TNFRSF14|8764|tumor necrosis factor receptor superfamily, member 14##NM_001195736|FAM213B|127281|family with sequence similarity 213, member B##NM_001195737|FAM213B|127281|family with sequence similarity 213, member B##NM_001195738|FAM213B|127281|family with sequence similarity 213, member B##NM_001195740|FAM213B|127281|family with sequence similarity 213, member B##NM_001195741|FAM213B|127281|family with sequence similarity 213, member B##NM_152371|FAM213B|127281|family with sequence similarity 213, member B##AK303504|FAM213B|127281|family with sequence similarity 213, member B##AK291908|FAM213B|127281|family with sequence similarity 213, member B##AK298926|FAM213B|127281|family with sequence similarity 213, member B##AK075273|FAM213B|127281|family with sequence similarity 213, member B##AF425266|FAM213B|127281|family with sequence similarity 213, member B##BC022547|FAM213B|127281|family with sequence similarity 213, member B##AK057027|FAM213B|127281|family with sequence similarity 213, member B##AK308034|FAM213B|127281|family with sequence similarity 213, member B##AK316243|FAM213B|127281|family with sequence similarity 213, member B##AK094901|FAM213B|127281|family with sequence similarity 213, member B	0.0	0.999497	CTCF.p2:54:0.999
chr12	54753088	54753188	reg1006814.p1	3.853	+	TSC_hg19_v1_chr12_+_54718927 AK223188 BC002849 AB463530 CU678240	-34201	+	TSC_hg19_v1_chr12_+_54718925 AB047848 AF086911	-34213	+	TSC_hg19_v1_chr12_+_54718922 AK293377 AK295325	-34218	+	AF237762 AF282693 TSC_hg19_v1_chr12_-_54758271 BC020614 NM_020370 AK290394	5112	-	AB528580 CR457327 TSC_hg19_v1_chr12_-_54778374	25198	-	AK296564 TSC_hg19_v1_chr12_-_54778485 AF304052 NM_015481	25336	-	AK223188|COPZ1|22818|coatomer protein complex, subunit zeta 1##BC002849|COPZ1|22818|coatomer protein complex, subunit zeta 1##AB047848|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF086911|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK293377|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK295325|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF237762|GPR84|53831|G protein-coupled receptor 84##AF282693|GPR84|53831|G protein-coupled receptor 84##BC020614|GPR84|53831|G protein-coupled receptor 84##NM_020370|GPR84|53831|G protein-coupled receptor 84##AK290394|GPR84|53831|G protein-coupled receptor 84##CR457327|ZNF385A|25946|zinc finger protein 385A##AK296564|ZNF385A|25946|zinc finger protein 385A##AF304052|ZNF385A|25946|zinc finger protein 385A##NM_015481|ZNF385A|25946|zinc finger protein 385A	0.0	0.0	
chr17	27609186	27609284	reg1008284.p2	3.853	+	NM_005208 BC113693 BC069537 CU686900 HQ258110	-35358	+	TSC_hg19_v1_chr17_-_27507417 CR933614 NM_078471 NM_203318 D86970	-101885	-	TSC_hg19_v1_chr17_-_27467408 AB177860 AY703984 AK303522 AK302725	-141824	-	AB385448 AJ493465 BC129989 BC129990 BC108307 AK297732 TSC_hg19_v1_chr17_-_27621134 AB037742 AY232289	11875	-	TSC_hg19_v1_chr17_-_27621167 AK293075 NM_020772	11930	-	NM_020791 NM_025142 BC133039 BC144067	108710	+	NM_005208|CRYBA1|1411|crystallin, beta A1##BC113693|CRYBA1|1411|crystallin, beta A1##BC069537|CRYBA1|1411|crystallin, beta A1##HQ258110|CRYBA1|1411|crystallin, beta A1##CR933614|MYO18A|399687|myosin XVIIIA##NM_078471|MYO18A|399687|myosin XVIIIA##NM_203318|MYO18A|399687|myosin XVIIIA##D86970|MYO18A|399687|myosin XVIIIA##AB177860|MYO18A|399687|myosin XVIIIA##AY703984|MYO18A|399687|myosin XVIIIA##AK303522|MYO18A|399687|myosin XVIIIA##AK302725|MYO18A|399687|myosin XVIIIA##AJ493465|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129989|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129990|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC108307|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK297732|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AB037742|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AY232289|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK293075|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020772|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020791|TAOK1|57551|TAO kinase 1##NM_025142|TAOK1|57551|TAO kinase 1##BC133039|TAOK1|57551|TAO kinase 1##BC144067|TAOK1|57551|TAO kinase 1	0.0	0.0	
chr19	4369031	4369139	reg1008251.p1	3.853	+	NM_001159846 NM_032868 AK027887 AK308468 TSC_hg19_v1_chr19_+_4343562 BC032652	-25526	+	TSC_hg19_v1_chr19_-_4342718 AK125774	-26335	-	AB527779 TSC_hg19_v1_chr19_-_4338790 BC000795 AJ245719 AK000241 NM_001013841 NM_017720	-30287	-	TSC_hg19_v1_chr19_-_4400419 AY364240 CR542087 AB527297 DQ891258 DQ894444 U65999 X99656 AK097616 NM_001199944	31308	-	BC001270 TSC_hg19_v1_chr19_-_4400513 AK315450 BC098565 AK299166 NM_001199943 NM_003025	31468	-	BC067093 NM_005483 BC052620 TSC_hg19_v1_chr19_+_4402664 BC041606 AB527824 U20979 BC005813 BC011560	33631	+	NM_001159846|MPND|84954|MPN domain containing##NM_032868|MPND|84954|MPN domain containing##AK027887|MPND|84954|MPN domain containing##AK308468|MPND|84954|MPN domain containing##BC032652|MPND|84954|MPN domain containing##AK125774|STAP2|55620|signal transducing adaptor family member 2##BC000795|STAP2|55620|signal transducing adaptor family member 2##AJ245719|STAP2|55620|signal transducing adaptor family member 2##AK000241|STAP2|55620|signal transducing adaptor family member 2##NM_001013841|STAP2|55620|signal transducing adaptor family member 2##NM_017720|STAP2|55620|signal transducing adaptor family member 2##AY364240|SH3GL1|6455|SH3-domain GRB2-like 1##CR542087|SH3GL1|6455|SH3-domain GRB2-like 1##DQ891258|SH3GL1|6455|SH3-domain GRB2-like 1##DQ894444|SH3GL1|6455|SH3-domain GRB2-like 1##U65999|SH3GL1|6455|SH3-domain GRB2-like 1##X99656|SH3GL1|6455|SH3-domain GRB2-like 1##AK097616|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199944|SH3GL1|6455|SH3-domain GRB2-like 1##BC001270|SH3GL1|6455|SH3-domain GRB2-like 1##AK315450|SH3GL1|6455|SH3-domain GRB2-like 1##BC098565|SH3GL1|6455|SH3-domain GRB2-like 1##AK299166|SH3GL1|6455|SH3-domain GRB2-like 1##NM_001199943|SH3GL1|6455|SH3-domain GRB2-like 1##NM_003025|SH3GL1|6455|SH3-domain GRB2-like 1##BC067093|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##NM_005483|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC052620|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC041606|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##U20979|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC005813|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)##BC011560|CHAF1A|10036|chromatin assembly factor 1, subunit A (p150)	0.98946	0.0	denovo_WM_7:2:0.868
chr19	44848479	44848631	reg1016561.p1	3.853	+	AL122078 TSC_hg19_v1_chr19_-_44831994 AK026230	-16562	-	TSC_hg19_v1_chr19_-_44809179 AK315242 BC105807 BC143484 BC117215 BC143482 AF027513 AK307103 AK300317 NM_004234	-39391	-	AK055310 NM_001207005 TSC_hg19_v1_chr19_+_44764038 NM_181756 AK095351	-84502	+	AF198358 BC101753 BC117223 AK023099 TSC_hg19_v1_chr19_-_44860833 NM_001083335 NM_013380	12271	-	AL833447 TSC_hg19_v1_chr19_-_44905779 AK302594 NM_152354	57213	-	TSC_hg19_v1_chr19_-_44952641 AB209357 AF192979 NM_014518 CR936724	104142	-	AL122078|ZFP112|7771|zinc finger protein 112 homolog (mouse)##AK026230|ZFP112|7771|zinc finger protein 112 homolog (mouse)##AK315242|ZNF235|9310|zinc finger protein 235##BC105807|ZNF235|9310|zinc finger protein 235##BC143484|ZNF235|9310|zinc finger protein 235##BC117215|ZNF235|9310|zinc finger protein 235##BC143482|ZNF235|9310|zinc finger protein 235##AF027513|ZNF235|9310|zinc finger protein 235##AK307103|ZNF235|9310|zinc finger protein 235##AK300317|ZNF235|9310|zinc finger protein 235##NM_004234|ZNF235|9310|zinc finger protein 235##AK055310|ZNF233|353355|zinc finger protein 233##NM_001207005|ZNF233|353355|zinc finger protein 233##NM_181756|ZNF233|353355|zinc finger protein 233##AK095351|ZNF233|353355|zinc finger protein 233##AF198358|ZFP112|7771|zinc finger protein 112 homolog (mouse)##BC101753|ZFP112|7771|zinc finger protein 112 homolog (mouse)##BC117223|ZFP112|7771|zinc finger protein 112 homolog (mouse)##AK023099|ZFP112|7771|zinc finger protein 112 homolog (mouse)##NM_001083335|ZFP112|7771|zinc finger protein 112 homolog (mouse)##NM_013380|ZFP112|7771|zinc finger protein 112 homolog (mouse)##AL833447|ZNF285|26974|zinc finger protein 285##AK302594|ZFP112|7771|zinc finger protein 112 homolog (mouse)##NM_152354|ZNF285|26974|zinc finger protein 285##AB209357|ZNF229|7772|zinc finger protein 229##AF192979|ZNF229|7772|zinc finger protein 229##NM_014518|ZNF229|7772|zinc finger protein 229##CR936724|ZNF229|7772|zinc finger protein 229	0.982834	0.0	denovo_WM_7:-17:0.796
chr4	167583573	167583732	reg1010595.p2	3.853	+	NM_001204760 NM_012464 U91963 BC136429 BC136430 BC144084 BC144085	-789198	+	TSC_hg19_v1_chr4_+_166300000 X51405 NM_001873 AK090962 AK127165 AK294175 AK290996 BC053612 BC033866 CU689780 DQ893322 DQ896637	-1283495	+	TSC_hg19_v1_chr4_+_166248871 NM_001017369 NM_006745 U93162 BC107879 AK295432 AK292418 AK309206	-1334797	+	AK295407 NM_001204353 AK294637 AK295015 AK295281 AK091078 AK295414 AK313042 TSC_hg19_v1_chr4_-_168155646	571959	-	BC000460 BC003017 BC013983 AB056866 AJ001454 AK294346 TSC_hg19_v1_chr4_-_168155714	572052	-	AY358973 NM_001040159 NM_001204352 NM_001204354 NM_001204355 NM_001204356 NM_001204358 NM_001251967 NM_016950 TSC_hg19_v1_chr4_-_168155748	572088	-	NM_001204760|TLL1|7092|tolloid-like 1##NM_012464|TLL1|7092|tolloid-like 1##U91963|TLL1|7092|tolloid-like 1##BC136429|TLL1|7092|tolloid-like 1##BC136430|TLL1|7092|tolloid-like 1##BC144084|TLL1|7092|tolloid-like 1##BC144085|TLL1|7092|tolloid-like 1##X51405|CPE|1363|carboxypeptidase E##NM_001873|CPE|1363|carboxypeptidase E##AK090962|CPE|1363|carboxypeptidase E##AK127165|CPE|1363|carboxypeptidase E##AK294175|CPE|1363|carboxypeptidase E##AK290996|CPE|1363|carboxypeptidase E##BC053612|CPE|1363|carboxypeptidase E##BC033866|CPE|1363|carboxypeptidase E##DQ893322|CPE|1363|carboxypeptidase E##DQ896637|CPE|1363|carboxypeptidase E##NM_001017369|MSMO1|6307|methylsterol monooxygenase 1##NM_006745|MSMO1|6307|methylsterol monooxygenase 1##U93162|MSMO1|6307|methylsterol monooxygenase 1##BC107879|MSMO1|6307|methylsterol monooxygenase 1##AK295432|MSMO1|6307|methylsterol monooxygenase 1##AK292418|MSMO1|6307|methylsterol monooxygenase 1##AK309206|MSMO1|6307|methylsterol monooxygenase 1##AK295407|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204353|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294637|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295015|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295281|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK091078|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK295414|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK313042|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC000460|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC003017|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##BC013983|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AB056866|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AJ001454|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AK294346|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##AY358973|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001040159|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204352|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204354|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204355|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204356|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001204358|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_001251967|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3##NM_016950|SPOCK3|50859|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	0.0	0.0	
chr7	131792961	131793066	reg1015373.p1	3.853	+	BC042466 TSC_hg19_v1_chr7_-_131241369 U97519 AK223573 AK055816 NM_001018111 NM_005397	-551650	-	TSC_hg19_v1_chr7_+_131012652 BC067825 AF047489 AK310452 AK002024	-780374	+	NM_013255 TSC_hg19_v1_chr7_+_131012611	-780407	+	TSC_hg19_v1_chr7_-_131833385 AL834504	40382	-	AL137352 AY358850 TSC_hg19_v1_chr7_-_132193002	399907	-	AK123428 TSC_hg19_v1_chr7_-_132261230	468217	-	BC042466|PODXL|5420|podocalyxin-like##U97519|PODXL|5420|podocalyxin-like##AK223573|PODXL|5420|podocalyxin-like##AK055816|PODXL|5420|podocalyxin-like##NM_001018111|PODXL|5420|podocalyxin-like##NM_005397|PODXL|5420|podocalyxin-like##BC067825|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AF047489|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK310452|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK002024|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AL834504|PLXNA4|91584|plexin A4##AL137352|PLXNA4|91584|plexin A4##AY358850|PLXNA4|91584|plexin A4##AK123428|PLXNA4|91584|plexin A4	0.0	0.0	
chr7	156418257	156418437	reg1014612.p1	3.853	+	AB464234 TSC_hg19_v1_chr7_-_155604951 L38518 NM_000193	-813457	-	AY927450 AY927452 AY927453 AY927454 AY927455 TSC_hg19_v1_chr7_-_155601833	-816549	-	TSC_hg19_v1_chr7_+_155437354 AK307515	-980979	+	AF063598 TSC_hg19_v1_chr7_-_156433234 BC050364 BC058889 BC031037 BC070228 AK056371 AF439977	14884	-	NM_030936 TSC_hg19_v1_chr7_+_156433487 AK314067 NM_001184996 AL136874 BC028120 AK307316	15118	+	NM_001184997 AF325690	17348	+	L38518|SHH|6469|sonic hedgehog##NM_000193|SHH|6469|sonic hedgehog##AY927450|SHH|6469|sonic hedgehog##AK307515|RBM33|155435|RNA binding motif protein 33##AF063598|C7orf13|129790|chromosome 7 open reading frame 13##BC050364|C7orf13|129790|chromosome 7 open reading frame 13##BC031037|C7orf13|129790|chromosome 7 open reading frame 13##BC070228|C7orf13|129790|chromosome 7 open reading frame 13##AK056371|C7orf13|129790|chromosome 7 open reading frame 13##AF439977|C7orf13|129790|chromosome 7 open reading frame 13##NM_030936|RNF32|140545|ring finger protein 32##AK314067|RNF32|140545|ring finger protein 32##NM_001184996|RNF32|140545|ring finger protein 32##AL136874|RNF32|140545|ring finger protein 32##BC028120|RNF32|140545|ring finger protein 32##AK307316|RNF32|140545|ring finger protein 32##NM_001184997|RNF32|140545|ring finger protein 32##AF325690|RNF32|140545|ring finger protein 32	0.010349	0.0	
chr9_gl000200_random	96575	96699	reg1017768.p1	3.853	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.991002	0.0	denovo_WM_7:-64:0.330	denovo_WM_7:-65:0.330	denovo_WM_7:-66:0.330
chr1	193012163	193012287	reg1010343.p1	3.852	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	-234041	+	NM_002927 NM_144766 AF030107 BC016667	-406941	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	-467317	+	BT006790 CU692976 AB528990 AF151828 AK225794 BC015521 TSC_hg19_v1_chr1_-_193028470 AK314445 AK316064 AK024751	16212	-	BC025369 TSC_hg19_v1_chr1_-_193028505 AK296487 AF147717 NM_001199261 NM_001199262 NM_001199263 NM_015984	16281	-	TSC_hg19_v1_chr1_-_193028528 AF157320	16306	-	BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##BT006790|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF151828|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK225794|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC015521|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK314445|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK316064|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK024751|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC025369|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK296487|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF147717|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_001199261|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_001199262|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_001199263|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_015984|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF157320|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5	1.057181	0.0	
chr17	60617631	60617722	reg1014255.p1	3.852	+	TSC_hg19_v1_chr17_+_60556483 NM_001112707 NM_006852 BC044925 AF162667 AX775745 AX775747	-61081	+	TSC_hg19_v1_chr17_+_60501257 NM_181725 BC006985 AB590991 AF161384 AK022822 AF161385	-116413	+	AK098684 NM_173503 BC101752 BC101778	-159750	+	TSC_hg19_v1_chr17_+_60704751 AB014609 BC153884 NM_006039	87081	+	BC146647 TSC_hg19_v1_chr17_+_60705048 AF134838	87369	+	TSC_hg19_v1_chr17_+_60705060 BC150212 AF107292 AB384513	87431	+	NM_001112707|TLK2|11011|tousled-like kinase 2##NM_006852|TLK2|11011|tousled-like kinase 2##BC044925|TLK2|11011|tousled-like kinase 2##AF162667|TLK2|11011|tousled-like kinase 2##NM_181725|METTL2A|339175|methyltransferase like 2A##BC006985|METTL2A|339175|methyltransferase like 2A##AF161384|METTL2A|339175|methyltransferase like 2A##AK022822|METTL2A|339175|methyltransferase like 2A##AF161385|METTL2A|339175|methyltransferase like 2A##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3##AB014609|MRC2|9902|mannose receptor, C type 2##BC153884|MRC2|9902|mannose receptor, C type 2##NM_006039|MRC2|9902|mannose receptor, C type 2##BC146647|MRC2|9902|mannose receptor, C type 2##AF134838|MRC2|9902|mannose receptor, C type 2##BC150212|MRC2|9902|mannose receptor, C type 2##AF107292|MRC2|9902|mannose receptor, C type 2	0.997236	0.0	
chr4	40520858	40520931	reg1009724.p1	3.852	+	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	-2936	-	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	-4310	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	-183449	+	TSC_hg19_v1_chr4_-_40631882 BC034402 BC071585 NM_001098634	110971	-	AK304206 TSC_hg19_v1_chr4_-_40632775	111813	-	BC042401 NM_024677 BC036568 AK024063	231052	+	AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC034402|RBM47|54502|RNA binding motif protein 47##BC071585|RBM47|54502|RNA binding motif protein 47##NM_001098634|RBM47|54502|RNA binding motif protein 47##AK304206|RBM47|54502|RNA binding motif protein 47##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7	0.989657	0.0	denovo_WM_7:-65:0.904
chr1	121258516	121258655	reg1016107.p2	3.851	+	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	-322633	-	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	-322676	-	NM_001100910	-419581	+	CR936796 TSC_hg19_v1_chr1_+_142618815 AK056396 AF277188	21360261	+	TSC_hg19_v1_chr1_-_143467618 BC070106	22209040	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	22485820	-	AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001100910|FAM72B|653820|family with sequence similarity 72, member B##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739	0.870819	0.0	denovo_WM_7:25:0.602
chr1	165708213	165708393	reg1015352.p1	3.851	+	TSC_hg19_v1_chr1_-_165667837 BC151140 BC151141 NM_000696	-40436	-	AF172093 TSC_hg19_v1_chr1_-_165667800 BC011410 AK301767 AK302654 AK312751 BC070030 AK293520	-40525	-	TSC_hg19_v1_chr1_-_165667539 AK302191 AK302183 X75425 U50203	-40715	-	CU674038 AF274935 TSC_hg19_v1_chr1_-_165738097 BC000104 AY763589 AK316080 AY359027 AK316610	29742	-	TSC_hg19_v1_chr1_-_165738106 AF070626 AB020980 AK298614 NM_019026	29817	-	AK124964 BC009228 TSC_hg19_v1_chr1_+_165738255 BC071770	29918	+	BC151140|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC151141|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##NM_000696|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AF172093|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC011410|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK301767|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK302654|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK312751|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##BC070030|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK293520|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK302191|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AK302183|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##X75425|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##U50203|ALDH9A1|223|aldehyde dehydrogenase 9 family, member A1##AF274935|TMCO1|54499|transmembrane and coiled-coil domains 1##BC000104|TMCO1|54499|transmembrane and coiled-coil domains 1##AY763589|TMCO1|54499|transmembrane and coiled-coil domains 1##AK316080|TMCO1|54499|transmembrane and coiled-coil domains 1##AY359027|TMCO1|54499|transmembrane and coiled-coil domains 1##AK316610|TMCO1|54499|transmembrane and coiled-coil domains 1##AF070626|TMCO1|54499|transmembrane and coiled-coil domains 1##AB020980|TMCO1|54499|transmembrane and coiled-coil domains 1##AK298614|TMCO1|54499|transmembrane and coiled-coil domains 1##NM_019026|TMCO1|54499|transmembrane and coiled-coil domains 1##AK124964|LOC100147773|100147773|uncharacterized LOC100147773##BC009228|LOC100147773|100147773|uncharacterized LOC100147773##BC071770|LOC100147773|100147773|uncharacterized LOC100147773	0.223557	0.0	denovo_WM_7:34:0.224
chr12	116761327	116761456	reg1014434.p2	3.851	+	TSC_hg19_v1_chr12_-_116715263 AY338463	-46231	-	TSC_hg19_v1_chr12_-_116714956 BC130422 AF515599 NM_015335	-46441	-	TSC_hg19_v1_chr12_-_115121970 AK054604 NM_005996 NM_016569	-1639251	-	TSC_hg19_v1_chr12_+_116971258 AK124947 BC038547	209838	+	NM_001085481	235794	+	TSC_hg19_v1_chr12_-_117175822 AK309652 BC019843 AK025068 NM_024738	414347	-	AY338463|MED13L|23389|mediator complex subunit 13-like##BC130422|MED13L|23389|mediator complex subunit 13-like##AF515599|MED13L|23389|mediator complex subunit 13-like##NM_015335|MED13L|23389|mediator complex subunit 13-like##AK054604|TBX3|6926|T-box 3##NM_005996|TBX3|6926|T-box 3##NM_016569|TBX3|6926|T-box 3##AK124947|LINC00173|100287569|long intergenic non-protein coding RNA 173##BC038547|LINC00173|100287569|long intergenic non-protein coding RNA 173##NM_001085481|MAP1LC3B2|643246|microtubule-associated protein 1 light chain 3 beta 2##AK309652|C12orf49|79794|chromosome 12 open reading frame 49##BC019843|C12orf49|79794|chromosome 12 open reading frame 49##AK025068|C12orf49|79794|chromosome 12 open reading frame 49##NM_024738|C12orf49|79794|chromosome 12 open reading frame 49	0.998839	0.0	
chr15	41186413	41186570	reg1007614.p1	3.851	+	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	-20044	-	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-49790	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-50141	+	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	209	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	35207	+	NM_001142776 NM_024111 TSC_hg19_v1_chr15_+_41245671 BC019625 BC001683 BC001847 AY702027	59213	+	AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)##NM_001142776|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##NM_024111|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC019625|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001683|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001847|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##AY702027|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)	0.0	0.289354	
chr3	16870169	16870349	reg1000937.p1	3.851	+	U65918 U66726 U66078 BC027595 NM_001351	-223293	-	BX648638 AK303026 NM_001190811	-223989	-	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-315035	-	AB029015 NM_001144382	56192	+	BC036392 NM_015184	104322	+	AK310539 NM_001134381	871252	-	U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2##BC036392|PLCL2|23228|phospholipase C-like 2##NM_015184|PLCL2|23228|phospholipase C-like 2##AK310539|TBC1D5|9779|TBC1 domain family, member 5##NM_001134381|TBC1D5|9779|TBC1 domain family, member 5	0.0	0.0	
chr4	40318560	40318678	reg1005211.p2	3.851	+	NM_004310 TSC_hg19_v1_chr4_+_40198653 Z35227 BC014261 AK313744	-119978	+	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	-260087	+	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	-339026	-	BC113549 BC113575 AJ243342 NM_017581 AB463495 HQ258272 AF227732	18826	+	TSC_hg19_v1_chr4_-_40516579 BX648404 AF262323	197965	-	TSC_hg19_v1_chr4_-_40518003 AK000280 NM_019027	199339	-	NM_004310|RHOH|399|ras homolog gene family, member H##Z35227|RHOH|399|ras homolog gene family, member H##BC014261|RHOH|399|ras homolog gene family, member H##AK313744|RHOH|399|ras homolog gene family, member H##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC113549|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BC113575|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AJ243342|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##NM_017581|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##HQ258272|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##AF227732|CHRNA9|55584|cholinergic receptor, nicotinic, alpha 9##BX648404|RBM47|54502|RNA binding motif protein 47##AF262323|RBM47|54502|RNA binding motif protein 47##AK000280|RBM47|54502|RNA binding motif protein 47##NM_019027|RBM47|54502|RNA binding motif protein 47	1.592278	0.0	denovo_WM_7:52:0.433	denovo_WM_7:56:0.325	denovo_WM_7:78:0.200
chr6	166755157	166755337	reg1007875.p2	3.851	+	BC034775 NM_175922 TSC_hg19_v1_chr6_-_166721880	-33371	-	BC098425 NM_003181	-173118	-	BC008632 BC039614 TSC_hg19_v1_chr6_-_166401541 BX647106	-353713	-	BC018969 NM_145169 TSC_hg19_v1_chr6_-_166756020	760	-	TSC_hg19_v1_chr6_-_166756034 AF041429 BC028388	787	-	CU674406 TSC_hg19_v1_chr6_-_166796429 BC000810 AK312201 AK310934	41162	-	BC034775|PRR18|285800|proline rich 18##NM_175922|PRR18|285800|proline rich 18##BC098425|T|6862|T, brachyury homolog (mouse)##NM_003181|T|6862|T, brachyury homolog (mouse)##BC008632|LINC00473|90632|long intergenic non-protein coding RNA 473##BC039614|LINC00473|90632|long intergenic non-protein coding RNA 473##BC018969|SFT2D1|113402|SFT2 domain containing 1##NM_145169|SFT2D1|113402|SFT2 domain containing 1##AF041429|SFT2D1|113402|SFT2 domain containing 1##BC028388|SFT2D1|113402|SFT2 domain containing 1##BC000810|BRP44L|51660|brain protein 44-like##AK312201|BRP44L|51660|brain protein 44-like	0.99577	0.0	denovo_WM_7:76:0.776	denovo_WM_7:77:0.203
chr9	114748686	114748866	reg1009218.p3	3.851	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-89309	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-89662	+	AL833535 NM_173521	-203001	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	188744	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	346511	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	347073	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.999414	0.0	
chr10	14434004	14434129	reg1019386.p1	3.850	+	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	-61216	-	TSC_hg19_v1_chr10_-_14050453 AK001072	-383574	-	TSC_hg19_v1_chr10_-_13749648 AK057828	-684377	-	TSC_hg19_v1_chr10_-_14646259 BC064407	212251	-	TSC_hg19_v1_chr10_-_14646423 BC072452	212363	-	AK127413 NM_031453	382829	-	AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##AK001072|FRMD4A|55691|FERM domain containing 4A##AK057828|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B##BC072452|FAM107B|83641|family with sequence similarity 107, member B##AK127413|FAM107B|83641|family with sequence similarity 107, member B##NM_031453|FAM107B|83641|family with sequence similarity 107, member B	1.993385	0.031581	denovo_WM_7:-35:0.815	denovo_WM_7:39:0.309	denovo_WM_7:40:0.309	denovo_WM_7:41:0.311
chr12	129328770	129328910	reg1015650.p2	3.850	+	BC028394 AK095717 TSC_hg19_v1_chr12_-_129308529 AY050629 BC146803 AY038999 NM_145648	-20397	-	NM_001136103	-576893	+	NM_052907	-3517679	+	BC043528 TSC_hg19_v1_chr12_+_129337985	9144	+	TSC_hg19_v1_chr12_+_129338057 AK056540 NM_144669 CU692172	9247	+	BC114626 BC114936 NM_133448 AB061814	1059371	-	BC028394|SLC15A4|121260|solute carrier family 15, member 4##AK095717|SLC15A4|121260|solute carrier family 15, member 4##AY050629|SLC15A4|121260|solute carrier family 15, member 4##BC146803|SLC15A4|121260|solute carrier family 15, member 4##AY038999|SLC15A4|121260|solute carrier family 15, member 4##NM_145648|SLC15A4|121260|solute carrier family 15, member 4##NM_001136103|TMEM132C|92293|transmembrane protein 132C##NM_052907|TMEM132B|114795|transmembrane protein 132B##BC043528|GLT1D1|144423|glycosyltransferase 1 domain containing 1##AK056540|GLT1D1|144423|glycosyltransferase 1 domain containing 1##NM_144669|GLT1D1|144423|glycosyltransferase 1 domain containing 1##BC114626|TMEM132D|121256|transmembrane protein 132D##BC114936|TMEM132D|121256|transmembrane protein 132D##NM_133448|TMEM132D|121256|transmembrane protein 132D##AB061814|TMEM132D|121256|transmembrane protein 132D	1.913898	0.0	denovo_WM_7:67:0.459	denovo_WM_7:68:0.534	denovo_WM_7:84:0.351	denovo_WM_7:85:0.318	denovo_WM_7:87:0.205
chr12	99833274	99833452	reg1016510.p2	3.850	+	AK294191 NM_001204067	-284496	-	BC026313 AF164792 BC142669 BC150204 AK289768 NM_001204068 NM_001204069 NM_001204070 NM_020140 NM_181670 BC068451 NM_001204066	-284806	-	AY356353 AK315954 AM980945 AK294994 TSC_hg19_v1_chr12_-_99288638 AK295988 NM_001204065 NM_001204079 NM_001204080 NM_001204081	-544776	-	NM_153364 AK312767 BC031221	208167	+	NM_152788	545068	-	BC127017 AK125813 TSC_hg19_v1_chr12_-_100536637 BC014891	703186	-	AK294191|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204067|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC026313|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AF164792|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC142669|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC150204|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK289768|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204068|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204069|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204070|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_020140|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_181670|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC068451|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204066|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AY356353|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK315954|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AM980945|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK294994|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##AK295988|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204065|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204079|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204080|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_001204081|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##NM_153364|FAM71C|196472|family with sequence similarity 71, member C##AK312767|FAM71C|196472|family with sequence similarity 71, member C##BC031221|FAM71C|196472|family with sequence similarity 71, member C##NM_152788|ANKS1B|56899|ankyrin repeat and sterile alpha motif domain containing 1B##BC127017|UHRF1BP1L|23074|UHRF1 binding protein 1-like##AK125813|UHRF1BP1L|23074|UHRF1 binding protein 1-like##BC014891|UHRF1BP1L|23074|UHRF1 binding protein 1-like	0.0	0.0	
chr1	93843455	93843571	reg1009859.p2	3.850	+	BC002809 TSC_hg19_v1_chr1_+_93811500	-32013	+	TSC_hg19_v1_chr1_+_93811491 AK057541 AL833729	-32020	+	TSC_hg19_v1_chr1_+_93811479 BC035507 NM_001938 BC068553	-32035	+	TSC_hg19_v1_chr1_+_93913680 NM_001024948 NM_001164473 NM_017737 AY514449	70209	+	TSC_hg19_v1_chr1_+_94057524 AK307291	214027	+	TSC_hg19_v1_chr1_+_94057602 BC084562	214094	+	BC002809|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##AK057541|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##AL833729|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##BC035507|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##NM_001938|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##BC068553|DR1|1810|down-regulator of transcription 1, TBP-binding (negative cofactor 2)##NM_001024948|FNBP1L|54874|formin binding protein 1-like##NM_001164473|FNBP1L|54874|formin binding protein 1-like##NM_017737|FNBP1L|54874|formin binding protein 1-like##AY514449|FNBP1L|54874|formin binding protein 1-like##AK307291|LOC100129046|100129046|uncharacterized LOC100129046##BC084562|LOC100129046|100129046|uncharacterized LOC100129046	1.849512	0.0	denovo_WM_7:-66:0.413	denovo_WM_7:-67:0.272	denovo_WM_7:-85:0.696
chr20	30865330	30865426	reg1010634.p2	3.850	+	TSC_hg19_v1_chr20_+_30795710 CU674282 AL832023	-69647	+	D80002 TSC_hg19_v1_chr20_+_30795698	-69680	+	TSC_hg19_v1_chr20_+_30795686 AK291033 AF375884 AK300810 AK303068 BC000582 NM_015352 NM_172236	-69743	+	TSC_hg19_v1_chr20_+_30865453 NM_004798 AK302403 AB002357	108	+	TSC_hg19_v1_chr20_+_30946303 NM_001164603 NM_015338 BC100280 BC064984 BC137278 BC137280 AJ438952	80792	+	TSC_hg19_v1_chr20_+_30946787 AK122923	81448	+	AL832023|POFUT1|23509|protein O-fucosyltransferase 1##D80002|POFUT1|23509|protein O-fucosyltransferase 1##AK291033|POFUT1|23509|protein O-fucosyltransferase 1##AF375884|POFUT1|23509|protein O-fucosyltransferase 1##AK300810|POFUT1|23509|protein O-fucosyltransferase 1##AK303068|POFUT1|23509|protein O-fucosyltransferase 1##BC000582|POFUT1|23509|protein O-fucosyltransferase 1##NM_015352|POFUT1|23509|protein O-fucosyltransferase 1##NM_172236|POFUT1|23509|protein O-fucosyltransferase 1##NM_004798|KIF3B|9371|kinesin family member 3B##AB002357|KIF3B|9371|kinesin family member 3B##NM_001164603|ASXL1|171023|additional sex combs like 1 (Drosophila)##NM_015338|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC100280|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC064984|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137278|ASXL1|171023|additional sex combs like 1 (Drosophila)##BC137280|ASXL1|171023|additional sex combs like 1 (Drosophila)##AJ438952|ASXL1|171023|additional sex combs like 1 (Drosophila)##AK122923|ASXL1|171023|additional sex combs like 1 (Drosophila)	0.0	0.0	
chr2	47610606	47610734	reg1014722.p1	3.850	+	TSC_hg19_v1_chr2_+_47596449 AK026585 BC014785 M26481 M32325 X14758 M33011 M32306 DQ891338 DQ894520 CR542259 CR542283	-14125	+	NM_002354 TSC_hg19_v1_chr2_+_47596376	-14328	+	TSC_hg19_v1_chr2_-_47403685 NM_001743	-206961	-	TSC_hg19_v1_chr2_+_47630218 AK304496	19534	+	TSC_hg19_v1_chr2_+_47630289 BC012599 NM_000251 U04045 AK222860 L47574 L47575 L47576 L47577 L47578 L47579 L47580 L47581 L47582 L47583	19598	+	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	19647	+	AK026585|EPCAM|4072|epithelial cell adhesion molecule##BC014785|EPCAM|4072|epithelial cell adhesion molecule##M26481|EPCAM|4072|epithelial cell adhesion molecule##M32325|EPCAM|4072|epithelial cell adhesion molecule##X14758|EPCAM|4072|epithelial cell adhesion molecule##M33011|EPCAM|4072|epithelial cell adhesion molecule##M32306|EPCAM|4072|epithelial cell adhesion molecule##DQ891338|EPCAM|4072|epithelial cell adhesion molecule##DQ894520|EPCAM|4072|epithelial cell adhesion molecule##CR542259|EPCAM|4072|epithelial cell adhesion molecule##CR542283|EPCAM|4072|epithelial cell adhesion molecule##NM_002354|EPCAM|4072|epithelial cell adhesion molecule##NM_001743|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC012599|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##NM_000251|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U04045|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK222860|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47574|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47575|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47576|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47577|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47578|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47579|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47580|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47581|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47582|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47583|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)	1.966785	0.0	denovo_WM_7:83:0.302	denovo_WM_7:84:0.543	denovo_WM_7:98:0.244	denovo_WM_7:99:0.663
chr2	98280803	98280983	reg1005547.p2	3.850	+	TSC_hg19_v1_chr2_-_98280591 NM_005735	-319	-	TSC_hg19_v1_chr2_-_98280472 CU678694 DQ893438 DQ896748 AB528334 BC006372 X82207 BC004374 BC010090	-463	-	TSC_hg19_v1_chr2_-_98275064 BC025274	-5813	-	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	49149	+	AB083211 NM_207519	69975	+	AK025852 TSC_hg19_v1_chr2_-_98408976	128029	-	NM_005735|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ893438|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ896748|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC006372|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##X82207|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC004374|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC010090|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC025274|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK025852|TMEM131|23505|transmembrane protein 131	0.980539	0.0	denovo_WM_7:34:0.523
chr4	52762005	52762151	reg1007989.p2	3.850	+	AK124346 NM_001040402 NM_015115 TSC_hg19_v1_chr4_+_52709318 BC053897 AK294896 BX537944 AK027051 D87466 BC041702 AM392554 AM392637 AM392729 AM393240	-52792	+	AK025164 NM_025087 BC137387 BC137388	-3773806	+	TSC_hg19_v1_chr4_-_48908795 CR749310 BC032808 AK298305 NM_001014446 NM_152398	-3853299	-	CR749811 NM_001024611	121707	-	BT019433 CR456810 DQ893140 DQ896425 EU176433 U29586 TSC_hg19_v1_chr4_-_52904447 AK299765 BC020709 AK289892 U31116 NM_000232	142379	-	TSC_hg19_v1_chr4_+_52917480 AK304386 AK057468 BC025396 NM_145263 AK314799	155455	+	AK124346|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_001040402|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##NM_015115|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC053897|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK294896|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BX537944|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK027051|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##D87466|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##BC041702|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392554|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392637|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM392729|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AM393240|DCUN1D4|23142|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)##AK025164|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##NM_025087|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137387|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##BC137388|CWH43|80157|cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)##CR749310|OCIAD2|132299|OCIA domain containing 2##BC032808|OCIAD2|132299|OCIA domain containing 2##AK298305|OCIAD2|132299|OCIA domain containing 2##NM_001014446|OCIAD2|132299|OCIA domain containing 2##NM_152398|OCIAD2|132299|OCIA domain containing 2##CR749811|LRRC66|339977|leucine rich repeat containing 66##NM_001024611|LRRC66|339977|leucine rich repeat containing 66##BT019433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##CR456810|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ893140|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##DQ896425|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##EU176433|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U29586|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK299765|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##BC020709|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK289892|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##U31116|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##NM_000232|SGCB|6443|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)##AK304386|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK057468|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##BC025396|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##NM_145263|SPATA18|132671|spermatogenesis associated 18 homolog (rat)##AK314799|SPATA18|132671|spermatogenesis associated 18 homolog (rat)	0.0	0.993611	CTCF.p2:81:0.994
chr6	11780119	11780274	reg1010115.p1	3.850	+	NM_001143948 NM_032744	-917	-	TSC_hg19_v1_chr6_+_11538493 NM_001100829	-241698	+	TSC_hg19_v1_chr6_-_11382537 BX648041 AK292682 NM_001142393	-397656	-	NM_002114	232527	+	NM_001168319 NM_001955 S56805 AK291838 AK307089 AK313914 TSC_hg19_v1_chr6_+_12290593 Y00749 AK226096 BC009720	510397	+	TSC_hg19_v1_chr6_+_12514301 D28417	734106	+	NM_001143948|C6orf105|84830|chromosome 6 open reading frame 105##NM_032744|C6orf105|84830|chromosome 6 open reading frame 105##NM_001100829|TMEM170B|100113407|transmembrane protein 170B##BX648041|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##AK292682|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_001142393|NEDD9|4739|neural precursor cell expressed, developmentally down-regulated 9##NM_002114|HIVEP1|3096|human immunodeficiency virus type I enhancer binding protein 1##NM_001168319|EDN1|1906|endothelin 1##NM_001955|EDN1|1906|endothelin 1##S56805|EDN1|1906|endothelin 1##AK291838|EDN1|1906|endothelin 1##AK307089|EDN1|1906|endothelin 1##AK313914|EDN1|1906|endothelin 1##Y00749|EDN1|1906|endothelin 1##AK226096|EDN1|1906|endothelin 1##BC009720|EDN1|1906|endothelin 1	0.988604	0.0	
chr7	119077039	119077154	reg1016297.p1	3.850	+	NM_019644 AK302407	-1212362	+	NM_016200 TSC_hg19_v1_chr7_+_117824222 BC042464 AK311936 AF182294 BC045532 BC053644 BC022440 BC002742 BC064376	-1252925	+	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	-1563553	-	AK307139 AB028967 NM_012281	836608	+	AY358703 AK312239 TSC_hg19_v1_chr7_-_120498032	1420924	-	TSC_hg19_v1_chr7_-_120498144 BC031265 NM_012338	1421064	-	NM_019644|ANKRD7|56311|ankyrin repeat domain 7##AK302407|ANKRD7|56311|ankyrin repeat domain 7##NM_016200|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC042464|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AK311936|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##AF182294|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC045532|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC053644|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC022440|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC002742|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC064376|NAA38|51691|N(alpha)-acetyltransferase 38, NatC auxiliary subunit##BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2##AB028967|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##NM_012281|KCND2|3751|potassium voltage-gated channel, Shal-related subfamily, member 2##AY358703|TSPAN12|23554|tetraspanin 12##AK312239|TSPAN12|23554|tetraspanin 12##BC031265|TSPAN12|23554|tetraspanin 12##NM_012338|TSPAN12|23554|tetraspanin 12	0.998457	0.0	denovo_WM_7:-14:0.747
chr8	142020597	142020689	reg1008367.p2	3.850	+	TSC_hg19_v1_chr8_-_142011326 AK304356 AL832961 AB209083 AB209071 L13616 NM_001199649 NM_005607 NM_153831	-9387	-	TSC_hg19_v1_chr8_-_141645612 BC125213 BC125214 NM_001164623 NM_012154	-375019	-	AK308709 BC015891 TSC_hg19_v1_chr8_+_141521583 AB463498 AF226076 DQ895620 EU176214	-499080	+	TSC_hg19_v1_chr8_+_142138725 NM_014957 AK058001 BC110827	118094	+	AK128212 NM_001080431	218029	-	TSC_hg19_v1_chr8_-_142264157 BC157840 BC171836	243547	-	AK304356|PTK2|5747|PTK2 protein tyrosine kinase 2##AL832961|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209083|PTK2|5747|PTK2 protein tyrosine kinase 2##AB209071|PTK2|5747|PTK2 protein tyrosine kinase 2##L13616|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_001199649|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_005607|PTK2|5747|PTK2 protein tyrosine kinase 2##NM_153831|PTK2|5747|PTK2 protein tyrosine kinase 2##BC125213|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##BC125214|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_001164623|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##NM_012154|EIF2C2|27161|eukaryotic translation initiation factor 2C, 2##AK308709|CHRAC1|54108|chromatin accessibility complex 1##BC015891|CHRAC1|54108|chromatin accessibility complex 1##AF226076|CHRAC1|54108|chromatin accessibility complex 1##DQ895620|CHRAC1|54108|chromatin accessibility complex 1##EU176214|CHRAC1|54108|chromatin accessibility complex 1##NM_014957|DENND3|22898|DENN/MADD domain containing 3##AK058001|DENND3|22898|DENN/MADD domain containing 3##BC110827|DENND3|22898|DENN/MADD domain containing 3##AK128212|SLC45A4|57210|solute carrier family 45, member 4##NM_001080431|SLC45A4|57210|solute carrier family 45, member 4##BC157840|SLC45A4|57210|solute carrier family 45, member 4##BC171836|SLC45A4|57210|solute carrier family 45, member 4	0.98627	0.0	denovo_WM_7:-52:0.816
chr10	121237987	121238142	reg1012061.p1	3.849	+	TSC_hg19_v1_chr10_+_120967098 BC018116 BC064506 BC064506 NM_005308 L15388 AK309761 AK309761 AK313012 AB590773	-270803	+	TSC_hg19_v1_chr10_-_120938340 BC021691 NM_006793 NM_014098	-299717	-	EF036492 AB527495 BT020007 CR450344 CU678120 AK222659 BC002685 D49396 TSC_hg19_v1_chr10_-_120938325 BC009601 BC059169 BC111397 AK313169 BC008435 BC022373 AK130897 BC007062	-299761	-	NM_002925	57980	-	AB587433 BC009361 TSC_hg19_v1_chr10_-_121302217 AK290773 NM_001005339	64126	-	AB527493 AY633610 AK295243 M96954 TSC_hg19_v1_chr10_-_121356143 AK290984 AK291239	118044	-	BC018116|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##BC064506|GRK5|2869|G protein-coupled receptor kinase 5##NM_005308|GRK5|2869|G protein-coupled receptor kinase 5##L15388|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK309761|GRK5|2869|G protein-coupled receptor kinase 5##AK313012|GRK5|2869|G protein-coupled receptor kinase 5##BC021691|PRDX3|10935|peroxiredoxin 3##NM_006793|PRDX3|10935|peroxiredoxin 3##NM_014098|PRDX3|10935|peroxiredoxin 3##EF036492|PRDX3|10935|peroxiredoxin 3##BT020007|PRDX3|10935|peroxiredoxin 3##CR450344|PRDX3|10935|peroxiredoxin 3##AK222659|PRDX3|10935|peroxiredoxin 3##BC002685|PRDX3|10935|peroxiredoxin 3##D49396|PRDX3|10935|peroxiredoxin 3##BC009601|PRDX3|10935|peroxiredoxin 3##BC059169|PRDX3|10935|peroxiredoxin 3##BC111397|PRDX3|10935|peroxiredoxin 3##AK313169|PRDX3|10935|peroxiredoxin 3##BC008435|PRDX3|10935|peroxiredoxin 3##BC022373|PRDX3|10935|peroxiredoxin 3##AK130897|PRDX3|10935|peroxiredoxin 3##BC007062|PRDX3|10935|peroxiredoxin 3##NM_002925|RGS10|6001|regulator of G-protein signaling 10##BC009361|RGS10|6001|regulator of G-protein signaling 10##AK290773|RGS10|6001|regulator of G-protein signaling 10##NM_001005339|RGS10|6001|regulator of G-protein signaling 10##AY633610|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK295243|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##M96954|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK290984|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1##AK291239|TIAL1|7073|TIA1 cytotoxic granule-associated RNA binding protein-like 1	0.991337	0.0	denovo_WM_7:-6:0.439	denovo_WM_7:-7:0.439
chr17	45620699	45620801	reg1015290.p2	3.849	+	TSC_hg19_v1_chr17_+_45608738 BC065294	-11999	+	TSC_hg19_v1_chr17_+_45608647 AK095877 AK296887 AJ132583	-12069	+	TSC_hg19_v1_chr17_+_45608556 AK096709	-12178	+	TSC_hg19_v1_chr17_+_45726838 AK316421	106091	+	L38951 NM_002265 TSC_hg19_v1_chr17_+_45727284	106534	+	BC036703 TSC_hg19_v1_chr17_+_45727323 AK314780 BC003572 BC024045	106595	+	BC065294|NPEPPS|9520|aminopeptidase puromycin sensitive##AK095877|NPEPPS|9520|aminopeptidase puromycin sensitive##AK296887|NPEPPS|9520|aminopeptidase puromycin sensitive##AJ132583|NPEPPS|9520|aminopeptidase puromycin sensitive##AK096709|NPEPPS|9520|aminopeptidase puromycin sensitive##AK316421|KPNB1|3837|karyopherin (importin) beta 1##L38951|KPNB1|3837|karyopherin (importin) beta 1##NM_002265|KPNB1|3837|karyopherin (importin) beta 1##BC036703|KPNB1|3837|karyopherin (importin) beta 1##AK314780|KPNB1|3837|karyopherin (importin) beta 1##BC003572|KPNB1|3837|karyopherin (importin) beta 1##BC024045|KPNB1|3837|karyopherin (importin) beta 1	0.997834	0.0	denovo_WM_7:-62:0.881
chr17	6660213	6660350	reg1011760.p1	3.849	+	BC073156 TSC_hg19_v1_chr17_+_6659364 AK292710 AK292848 BC032776 BC058017 EF028165 EF028166 X99699	-903	+	NM_017523 NM_199139	-1126	+	AJ489980 AY151833 AK172785 AK297612 TSC_hg19_v1_chr17_-_6616686 AK127797 BC104795 BC112151 BC143689 NM_001143838 NM_177550	-43586	-	NM_153230 BC034782	19280	+	AF357879 AK292818 AK304345 BC014599 NM_053285	74752	-	M62982 NM_000697 M35418 M58704 BC069557 AB590844	239126	+	BC073156|XAF1|54739|XIAP associated factor 1##AK292710|XAF1|54739|XIAP associated factor 1##AK292848|XAF1|54739|XIAP associated factor 1##BC032776|XAF1|54739|XIAP associated factor 1##BC058017|XAF1|54739|XIAP associated factor 1##EF028165|XAF1|54739|XIAP associated factor 1##EF028166|XAF1|54739|XIAP associated factor 1##X99699|XAF1|54739|XIAP associated factor 1##NM_017523|XAF1|54739|XIAP associated factor 1##NM_199139|XAF1|54739|XIAP associated factor 1##AJ489980|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AY151833|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK172785|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK297612|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##AK127797|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC104795|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC112151|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##BC143689|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_001143838|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_177550|SLC13A5|284111|solute carrier family 13 (sodium-dependent citrate transporter), member 5##NM_153230|FBXO39|162517|F-box protein 39##BC034782|FBXO39|162517|F-box protein 39##AF357879|TEKT1|83659|tektin 1##AK292818|TEKT1|83659|tektin 1##AK304345|TEKT1|83659|tektin 1##BC014599|TEKT1|83659|tektin 1##NM_053285|TEKT1|83659|tektin 1##M62982|ALOX12|239|arachidonate 12-lipoxygenase##NM_000697|ALOX12|239|arachidonate 12-lipoxygenase##M35418|ALOX12|239|arachidonate 12-lipoxygenase##M58704|ALOX12|239|arachidonate 12-lipoxygenase##BC069557|ALOX12|239|arachidonate 12-lipoxygenase	1.009715	0.0	denovo_WM_7:37:0.418	denovo_WM_7:38:0.418
chr17	79818654	79818769	reg1017654.p1	3.849	+	TSC_hg19_v1_chr17_-_79818514 NM_000918	-174	-	AK298005 TSC_hg19_v1_chr17_-_79818446	-266	-	TSC_hg19_v1_chr17_-_79818439 AK297081 AK095938 AK300561	-281	-	TSC_hg19_v1_chr17_-_79828694 NM_001185077	10029	-	TSC_hg19_v1_chr17_-_79829214 BC016185 BC024258 BC075827 X69550 BC027730 BC028333 BC013846 BC009759 AK312347 AK293147	10493	-	BC005851 BC005875 TSC_hg19_v1_chr17_-_79829249 BC106044 AK300816	10537	-	NM_000918|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK298005|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK297081|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK095938|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##AK300561|P4HB|5034|prolyl 4-hydroxylase, beta polypeptide##NM_001185077|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC016185|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC024258|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC075827|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##X69550|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC027730|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC028333|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC013846|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC009759|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##AK312347|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##AK293147|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC005851|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC005875|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##BC106044|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha##AK300816|ARHGDIA|396|Rho GDP dissociation inhibitor (GDI) alpha	0.0	0.0	
chr2	231450785	231450851	reg1013705.p1	3.849	+	AK091898 NM_001206704	-169348	+	AK293373 TSC_hg19_v1_chr2_+_231280934 AF056322 AF255565 M60618 U36501	-169862	+	TSC_hg19_v1_chr2_+_231280915 AK304205 BC011562	-169899	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	126728	+	TSC_hg19_v1_chr2_+_231577633 BC020570	126826	+	AK292382 NM_001130849 NM_001130850 AK315692	127460	+	AK091898|SP100|6672|SP100 nuclear antigen##NM_001206704|SP100|6672|SP100 nuclear antigen##AK293373|SP100|6672|SP100 nuclear antigen##AF056322|SP100|6672|SP100 nuclear antigen##AF255565|SP100|6672|SP100 nuclear antigen##M60618|SP100|6672|SP100 nuclear antigen##U36501|SP100|6672|SP100 nuclear antigen##AK304205|SP100|6672|SP100 nuclear antigen##BC011562|SP100|6672|SP100 nuclear antigen##NM_016289|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39	0.998732	0.0	denovo_WM_7:71:0.494	denovo_WM_7:72:0.494
chr2	89036838	89036985	reg1007823.p1	3.849	+	TSC_hg19_v1_chr2_+_88991190 NM_144563 AY050633 BC015529	-45696	+	AF110146 BC126354 BC126356 AK128659 TSC_hg19_v1_chr2_-_88926983 AK315287 AF193339 NM_004836	-109933	-	AK058098 NM_152670 BC029522	-212727	+	BX648045 TSC_hg19_v1_chr2_+_89065391 AL137717 BC031698	28490	+	S49006 TSC_hg19_v1_chr2_-_89165772	128801	-	TSC_hg19_v1_chr2_+_89185057 BC017870 X02990 M38267 AJ004955 S50732 L33854 AJ004956 BC018761 AY204756 M29467 Z46347 Z27174 X72457 AY621626 EU202450 X72474 Z68966 X72492 AF490937	148179	+	NM_144563|RPIA|22934|ribose 5-phosphate isomerase A##AY050633|RPIA|22934|ribose 5-phosphate isomerase A##BC015529|RPIA|22934|ribose 5-phosphate isomerase A##AF110146|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126354|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##BC126356|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK128659|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK315287|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AF193339|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##NM_004836|EIF2AK3|9451|eukaryotic translation initiation factor 2-alpha kinase 3##AK058098|C2orf51|200523|chromosome 2 open reading frame 51##NM_152670|C2orf51|200523|chromosome 2 open reading frame 51##BC029522|C2orf51|200523|chromosome 2 open reading frame 51##BX648045|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##AL137717|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2##BC031698|ANKRD36BP2|645784|ankyrin repeat domain 36B pseudogene 2	0.0	0.0	
chr3	58027678	58027852	reg1018372.p1	3.849	+	TSC_hg19_v1_chr3_+_57994148 AF043045 NM_001164317 NM_001164318 NM_001164319 NM_001457 AB371580 AB191258 AB371581 AB371582 AF042166	-33618	+	AY358410 NM_007159 AK124200 BC114627 BC115701 AB587554	-284563	+	TSC_hg19_v1_chr3_-_57678799 AB385262 AK074156 BC040291 NM_152678	-349026	-	NM_004944	172632	-	TSC_hg19_v1_chr3_+_58223264 NM_020676 AK225942 AK172797 AK313168	195518	+	TSC_hg19_v1_chr3_+_58223518 AF225418 AK122983 BC001698	195765	+	AF043045|FLNB|2317|filamin B, beta##NM_001164317|FLNB|2317|filamin B, beta##NM_001164318|FLNB|2317|filamin B, beta##NM_001164319|FLNB|2317|filamin B, beta##NM_001457|FLNB|2317|filamin B, beta##AB371580|FLNB|2317|filamin B, beta##AB191258|FLNB|2317|filamin B, beta##AB371581|FLNB|2317|filamin B, beta##AB371582|FLNB|2317|filamin B, beta##AF042166|FLNB|2317|filamin B, beta##AY358410|SLMAP|7871|sarcolemma associated protein##NM_007159|SLMAP|7871|sarcolemma associated protein##AK124200|SLMAP|7871|sarcolemma associated protein##BC114627|SLMAP|7871|sarcolemma associated protein##BC115701|SLMAP|7871|sarcolemma associated protein##AK074156|FAM116A|201627|family with sequence similarity 116, member A##BC040291|FAM116A|201627|family with sequence similarity 116, member A##NM_152678|FAM116A|201627|family with sequence similarity 116, member A##NM_004944|DNASE1L3|1776|deoxyribonuclease I-like 3##NM_020676|ABHD6|57406|abhydrolase domain containing 6##AK225942|ABHD6|57406|abhydrolase domain containing 6##AK172797|ABHD6|57406|abhydrolase domain containing 6##AK313168|ABHD6|57406|abhydrolase domain containing 6##AF225418|ABHD6|57406|abhydrolase domain containing 6##AK122983|ABHD6|57406|abhydrolase domain containing 6##BC001698|ABHD6|57406|abhydrolase domain containing 6	0.0	0.0	
chr6	22102979	22103151	reg1009330.p1	3.849	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	-436406	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-508693	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1568342	+	BC015850 NM_000948	194664	-	X54394 X54393 GQ305133 M58594 NM_001163558	199982	-	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	466660	+	AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1	0.0	0.0	
chr7	104909635	104909763	reg1012727.p2	3.849	+	BC035214 TSC_hg19_v1_chr7_-_104909496 U88666 NM_182691	-216	-	TSC_hg19_v1_chr7_+_104752313 AY222296 AY438698	-157321	+	TSC_hg19_v1_chr7_+_104681423 AY157990	-228285	+	TSC_hg19_v1_chr7_-_105029265 AB489157	119566	-	TSC_hg19_v1_chr7_-_105029346 NM_182692	119643	-	TSC_hg19_v1_chr7_-_105162688 BC011396 AK091283 AX746894 NM_019042 AK128629	252962	-	BC035214|SRPK2|6733|SRSF protein kinase 2##U88666|SRPK2|6733|SRSF protein kinase 2##NM_182691|SRPK2|6733|SRSF protein kinase 2##AY222296|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY438698|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##AY157990|MLL5|55904|myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)##NM_182692|SRPK2|6733|SRSF protein kinase 2##BC011396|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK091283|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##NM_019042|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)##AK128629|PUS7|54517|pseudouridylate synthase 7 homolog (S. cerevisiae)	0.0	0.0	
chr9	130669173	130669263	reg1002362.p2	3.849	+	TSC_hg19_v1_chr9_-_130667604 AY358672 AK124217 AK310850	-1603	-	TSC_hg19_v1_chr9_-_130661892 BC036102	-7308	-	TSC_hg19_v1_chr9_-_130661883 AK023900	-7339	-	BC036705 TSC_hg19_v1_chr9_-_130679297 AK292049 AK000600 NM_175039 NM_175040	10042	-	TSC_hg19_v1_chr9_-_130689700 BC042184 NM_173492	20515	-	NM_001135219	23857	-	AY358672|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK124217|LOC100131355|100131355|uncharacterized LOC100131355##AK310850|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036102|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##AK023900|ST6GALNAC6|30815|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6##BC036705|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK292049|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##AK000600|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175039|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##NM_175040|ST6GALNAC4|27090|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4##BC042184|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_173492|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1##NM_001135219|PIP5KL1|138429|phosphatidylinositol-4-phosphate 5-kinase-like 1	0.045776	0.0	
chrX	20970630	20970703	reg1006129.p2	3.849	+	TSC_hg19_v1_chrX_-_20285141 AK294373	-685502	-	TSC_hg19_v1_chrX_-_20285001 AB208933	-685709	-	AB102662 L07599 AB384785 BC096301 BC096302 BC096303 NM_004586 U08316 AK313932	-685936	-	TSC_hg19_v1_chrX_+_21392535 NM_001168647 NM_001168648 NM_001168649 NM_014927 AB020709 AK294728	421842	+	BC109031 AK092279 AX747450 NM_153270	705765	-	BC005948 AF129505 AJ250584 NM_014332 AK312134	805551	-	AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB102662|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##L07599|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096301|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096302|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096303|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_004586|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##U08316|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK313932|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_001168647|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168648|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168649|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_014927|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AB020709|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AK294728|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##BC109031|KLHL34|257240|kelch-like 34 (Drosophila)##AK092279|KLHL34|257240|kelch-like 34 (Drosophila)##NM_153270|KLHL34|257240|kelch-like 34 (Drosophila)##BC005948|SMPX|23676|small muscle protein, X-linked##AF129505|SMPX|23676|small muscle protein, X-linked##AJ250584|SMPX|23676|small muscle protein, X-linked##NM_014332|SMPX|23676|small muscle protein, X-linked##AK312134|SMPX|23676|small muscle protein, X-linked	0.0	0.0	
chr13	50705370	50705547	reg1011349.p2	3.848	+	TSC_hg19_v1_chr13_-_50699781 AF380424	-5643	-	AJ412023 AJ412024 AJ412025 AJ412026 AJ412038 AJ412039 AJ412054 AJ412055 AJ412056 AJ412057 AJ412058 AJ412059 AJ412060 AJ412061 AJ412062 Y15227 TSC_hg19_v1_chr13_+_50656364 BC004131 AK312167 BC020692 AK095311	-49113	+	TSC_hg19_v1_chr13_-_50656128 BC038090 AF264787 Y15228 BC022349 BC006995 BC026275 BC030971 BC070292 BC055417 BC017819 BC022282	-49309	-	AJ412041 AJ412042 AJ412043 TSC_hg19_v1_chr13_+_50760088	54595	+	AY357595 BC104892 BC112009 NM_198989 AK303567 AK126830	712494	-	NM_001142279 NM_024570 TSC_hg19_v1_chr13_+_51483898	778398	+	AF380424|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AJ412023|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412024|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412061|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AJ412062|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##Y15227|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC020692|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##AK095311|DLEU1|10301|deleted in lymphocytic leukemia 1 (non-protein coding)##BC038090|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AF264787|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##Y15228|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##BC070292|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##BC055417|DLEU2|8847|deleted in lymphocytic leukemia 2 (non-protein coding)##AY357595|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC104892|DLEU7|220107|deleted in lymphocytic leukemia, 7##BC112009|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_198989|DLEU7|220107|deleted in lymphocytic leukemia, 7##AK126830|DLEU7|220107|deleted in lymphocytic leukemia, 7##NM_001142279|RNASEH2B|79621|ribonuclease H2, subunit B##NM_024570|RNASEH2B|79621|ribonuclease H2, subunit B	0.0	0.0	
chr14	73941787	73941885	reg1009236.p2	3.848	+	TSC_hg19_v1_chr14_-_73925284 BC068476 NM_001005743 NM_001005744 NM_001005745 NM_003744	-16545	-	TSC_hg19_v1_chr14_-_73925274 BX248781	-16569	-	BX248775 TSC_hg19_v1_chr14_-_73925232 BX647137 AF171938 AF171939 AF171940 AF171941 BX248073 AF015040 AK315130 BC020788	-16604	-	TSC_hg19_v1_chr14_+_73957638 NM_024644	15789	+	TSC_hg19_v1_chr14_+_73957669 AK299994 AK025455 BC011350	15827	+	TSC_hg19_v1_chr14_+_73957674 AY390535	15837	+	BC068476|NUMB|8650|numb homolog (Drosophila)##NM_001005743|NUMB|8650|numb homolog (Drosophila)##NM_001005744|NUMB|8650|numb homolog (Drosophila)##NM_001005745|NUMB|8650|numb homolog (Drosophila)##NM_003744|NUMB|8650|numb homolog (Drosophila)##BX248781|NUMB|8650|numb homolog (Drosophila)##BX248775|NUMB|8650|numb homolog (Drosophila)##BX647137|NUMB|8650|numb homolog (Drosophila)##AF171938|NUMB|8650|numb homolog (Drosophila)##AF171939|NUMB|8650|numb homolog (Drosophila)##AF171940|NUMB|8650|numb homolog (Drosophila)##AF171941|NUMB|8650|numb homolog (Drosophila)##BX248073|NUMB|8650|numb homolog (Drosophila)##AF015040|NUMB|8650|numb homolog (Drosophila)##AK315130|NUMB|8650|numb homolog (Drosophila)##BC020788|NUMB|8650|numb homolog (Drosophila)##NM_024644|C14orf169|79697|chromosome 14 open reading frame 169##AK299994|C14orf169|79697|chromosome 14 open reading frame 169##AK025455|C14orf169|79697|chromosome 14 open reading frame 169##BC011350|C14orf169|79697|chromosome 14 open reading frame 169##AY390535|C14orf169|79697|chromosome 14 open reading frame 169	0.990257	0.0	
chr15	91373377	91373503	reg1017376.p1	3.848	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	-112826	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-300244	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-441901	+	NM_002569 X17094	38444	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	54261	+	DQ891350 DQ894530 AB590559 AY513654 AY513655 AY513656 AY513657 NM_001143783 NM_001143784	54833	+	BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene##DQ891350|FES|2242|feline sarcoma oncogene##DQ894530|FES|2242|feline sarcoma oncogene##AY513654|FES|2242|feline sarcoma oncogene##AY513655|FES|2242|feline sarcoma oncogene##AY513656|FES|2242|feline sarcoma oncogene##AY513657|FES|2242|feline sarcoma oncogene##NM_001143783|FES|2242|feline sarcoma oncogene##NM_001143784|FES|2242|feline sarcoma oncogene	0.0	0.0	
chr17	2162057	2162161	reg1015003.p2	3.848	+	DQ187313 NM_001098202	-202552	+	TSC_hg19_v1_chr17_+_1958396 NM_006497 BC030208	-203711	+	NM_080822 TSC_hg19_v1_chr17_+_1945315 BC040696 BC041170 AF073528 AF321875 CU691978 GQ129352 GQ129353	-216801	+	TSC_hg19_v1_chr17_-_2206814 AK024131 NM_001170957	44703	-	AB385377 AY145883 TSC_hg19_v1_chr17_-_2207028 NM_017575	44931	-	TSC_hg19_v1_chr17_+_2207247 AY743706 AK223120 AK023169 NM_021947 BC057234	45143	+	DQ187313|HIC1|3090|hypermethylated in cancer 1##NM_001098202|HIC1|3090|hypermethylated in cancer 1##NM_006497|HIC1|3090|hypermethylated in cancer 1##BC030208|HIC1|3090|hypermethylated in cancer 1##NM_080822|OVCA2|124641|ovarian tumor suppressor candidate 2##BC040696|OVCA2|124641|ovarian tumor suppressor candidate 2##BC041170|OVCA2|124641|ovarian tumor suppressor candidate 2##AF073528|OVCA2|124641|ovarian tumor suppressor candidate 2##AF321875|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129352|OVCA2|124641|ovarian tumor suppressor candidate 2##GQ129353|OVCA2|124641|ovarian tumor suppressor candidate 2##AK024131|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_001170957|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY145883|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##NM_017575|SMG6|23293|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY743706|SRR|63826|serine racemase##AK223120|SRR|63826|serine racemase##AK023169|SRR|63826|serine racemase##NM_021947|SRR|63826|serine racemase##BC057234|SRR|63826|serine racemase	0.997745	0.0	denovo_WM_7:-8:0.951
chr17	37275116	37275227	reg1015339.p1	3.848	+	BC140879 BC140880 NM_001008777 AY700575	-151532	-	TSC_hg19_v1_chr17_+_37026351 X82456 BC012460 DQ891539 DQ894728 AB463833 CU675705 AK289847	-248775	+	TSC_hg19_v1_chr17_+_37026313 AK295522 AK296092 AK309933 BC007560	-248857	+	EU832116 EU832210 AK312999 TSC_hg19_v1_chr17_-_37307740 AF279144 AF378753 AY704670 AY704671	32561	-	TSC_hg19_v1_chr17_-_37307863 BC036059	32676	-	TSC_hg19_v1_chr17_-_37307891 NM_020405	32724	-	BC140879|FBXO47|494188|F-box protein 47##BC140880|FBXO47|494188|F-box protein 47##NM_001008777|FBXO47|494188|F-box protein 47##AY700575|FBXO47|494188|F-box protein 47##X82456|LASP1|3927|LIM and SH3 protein 1##BC012460|LASP1|3927|LIM and SH3 protein 1##DQ891539|LASP1|3927|LIM and SH3 protein 1##DQ894728|LASP1|3927|LIM and SH3 protein 1##AK289847|LASP1|3927|LIM and SH3 protein 1##AK295522|LASP1|3927|LIM and SH3 protein 1##AK296092|LASP1|3927|LIM and SH3 protein 1##AK309933|LASP1|3927|LIM and SH3 protein 1##BC007560|LASP1|3927|LIM and SH3 protein 1##EU832116|PLXDC1|57125|plexin domain containing 1##EU832210|PLXDC1|57125|plexin domain containing 1##AK312999|PLXDC1|57125|plexin domain containing 1##AF279144|PLXDC1|57125|plexin domain containing 1##AF378753|PLXDC1|57125|plexin domain containing 1##AY704670|PLXDC1|57125|plexin domain containing 1##AY704671|PLXDC1|57125|plexin domain containing 1##BC036059|PLXDC1|57125|plexin domain containing 1##NM_020405|PLXDC1|57125|plexin domain containing 1	0.990067	0.0	denovo_WM_7:15:0.874
chr1	85439534	85439641	reg1018428.p1	3.848	+	TSC_hg19_v1_chr1_-_85358890 AK308283 NM_012152	-80701	-	AY367055 TSC_hg19_v1_chr1_-_85156128 AK316472 AK307336 BC064389 BC033637 AK294057 AK292475 NM_001166295 NM_001166417 AL133046 AB023140 NM_001166293 NM_001166294 NM_014021	-283511	-	TSC_hg19_v1_chr1_-_85040102 CU692842 M95767 AK075423 BC065191 AK298703 AK314640 BC126333 BC126335 BC024007 BC096752 NM_004388	-399481	-	BC104891 BC104893 TSC_hg19_v1_chr1_-_85462793 AK094010 AK309858 AX748410 NM_153259	23121	-	AF475085 AK001868 BC060765 TSC_hg19_v1_chr1_-_85514153 AK292206	74558	-	TSC_hg19_v1_chr1_-_85514184 BX647497 AK314354 NM_001253693 NM_018298	74611	-	AK308283|LPAR3|23566|lysophosphatidic acid receptor 3##NM_012152|LPAR3|23566|lysophosphatidic acid receptor 3##AY367055|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK316472|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK307336|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC064389|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##BC033637|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK294057|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AK292475|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166295|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166417|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AL133046|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##AB023140|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166293|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_001166294|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##NM_014021|SSX2IP|117178|synovial sarcoma, X breakpoint 2 interacting protein##M95767|CTBS|1486|chitobiase, di-N-acetyl-##AK075423|CTBS|1486|chitobiase, di-N-acetyl-##BC065191|CTBS|1486|chitobiase, di-N-acetyl-##AK298703|CTBS|1486|chitobiase, di-N-acetyl-##AK314640|CTBS|1486|chitobiase, di-N-acetyl-##BC126333|CTBS|1486|chitobiase, di-N-acetyl-##BC126335|CTBS|1486|chitobiase, di-N-acetyl-##BC024007|CTBS|1486|chitobiase, di-N-acetyl-##BC096752|CTBS|1486|chitobiase, di-N-acetyl-##NM_004388|CTBS|1486|chitobiase, di-N-acetyl-##BC104891|MCOLN2|255231|mucolipin 2##BC104893|MCOLN2|255231|mucolipin 2##AK094010|MCOLN2|255231|mucolipin 2##AK309858|MCOLN2|255231|mucolipin 2##NM_153259|MCOLN2|255231|mucolipin 2##AF475085|MCOLN3|55283|mucolipin 3##AK001868|MCOLN3|55283|mucolipin 3##BC060765|MCOLN3|55283|mucolipin 3##AK292206|MCOLN3|55283|mucolipin 3##BX647497|MCOLN3|55283|mucolipin 3##AK314354|MCOLN3|55283|mucolipin 3##NM_001253693|MCOLN3|55283|mucolipin 3##NM_018298|MCOLN3|55283|mucolipin 3	0.0	0.0	
chr3	105903894	105903960	reg1014514.p2	3.848	+	TSC_hg19_v1_chr3_-_105587818 AK094184 AK292792 BC032851 NM_170662 U26710 U26711 U26712	-316120	-	CR749655 TSC_hg19_v1_chr3_-_105421064	-482873	-	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	-818105	+	TSC_hg19_v1_chr3_-_106959482 BC036229	1055552	-	TSC_hg19_v1_chr3_+_106959546 AK309100 BC039550 AK055934	1055665	+	AK058091 NM_032600 BC030780 AF367469 CU689006 DQ890829 DQ890830 DQ893985	1192383	+	AK094184|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK292792|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##BC032851|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##NM_170662|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26710|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26711|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##U26712|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##CR749655|CBLB|868|Cas-Br-M (murine) ecotropic retroviral transforming sequence b##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule##AK309100|LOC344595|344595|uncharacterized LOC344595##BC039550|LOC344595|344595|uncharacterized LOC344595##AK055934|LOC344595|344595|uncharacterized LOC344595##AK058091|CCDC54|84692|coiled-coil domain containing 54##NM_032600|CCDC54|84692|coiled-coil domain containing 54##BC030780|CCDC54|84692|coiled-coil domain containing 54##AF367469|CCDC54|84692|coiled-coil domain containing 54##DQ890829|CCDC54|84692|coiled-coil domain containing 54##DQ890830|CCDC54|84692|coiled-coil domain containing 54##DQ893985|CCDC54|84692|coiled-coil domain containing 54	0.0	0.0	
chr6	134557308	134557488	reg1011272.p2	3.848	+	TSC_hg19_v1_chr6_-_134498984 FM205708 AK293383 NM_001143677	-58406	-	NM_001143678 AK298688	-60300	-	FM205707 TSC_hg19_v1_chr6_-_134496850	-60537	-	AK055077 NM_001143676	81797	-	TSC_hg19_v1_chr6_+_134758857 AK055166	201450	+	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	713834	-	FM205708|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK293383|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143677|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143678|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK298688|SGK1|6446|serum/glucocorticoid regulated kinase 1##FM205707|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK055077|SGK1|6446|serum/glucocorticoid regulated kinase 1##NM_001143676|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK055166|LOC154092|154092|uncharacterized LOC154092##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1	0.0	0.0	
chr6	92215033	92215099	reg1011962.p1	3.848	+	TSC_hg19_v1_chr6_-_91296792 BC017715 AK299268 AK315774 NM_003188 NM_145332 NM_145333	-918228	-	AB009358 BT019654 BT019655 AB528733 AF218074 TSC_hg19_v1_chr6_-_91296744 AB009356 AB009357 NM_145331	-918383	-	TSC_hg19_v1_chr6_-_91006590 AK309526 NM_001170794	-1208454	-	CU693332 AB527279 BC126125 BC126151 BC143857 BC143858 TSC_hg19_v1_chr6_-_94129273 L36642 BC027940 AK313529 AB209269 NM_004440	1914117	-	TSC_hg19_v1_chr6_-_96025325 BC047582	3810223	-	TSC_hg19_v1_chr6_+_96025418 NM_024641 BX640869 AY048774 AY048775 BC146671 BC150199 CR936827 AK291940 BX537398	3810335	+	BC017715|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK299268|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK315774|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_003188|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145332|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145333|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009358|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019654|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##BT019655|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AF218074|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009356|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AB009357|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##NM_145331|MAP3K7|6885|mitogen-activated protein kinase kinase kinase 7##AK309526|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##NM_001170794|BACH2|60468|BTB and CNC homology 1, basic leucine zipper transcription factor 2##BC126125|EPHA7|2045|EPH receptor A7##BC126151|EPHA7|2045|EPH receptor A7##BC143857|EPHA7|2045|EPH receptor A7##BC143858|EPHA7|2045|EPH receptor A7##L36642|EPHA7|2045|EPH receptor A7##BC027940|EPHA7|2045|EPH receptor A7##AK313529|EPHA7|2045|EPH receptor A7##AB209269|EPHA7|2045|EPH receptor A7##NM_004440|EPHA7|2045|EPH receptor A7##NM_024641|MANEA|79694|mannosidase, endo-alpha##BX640869|MANEA|79694|mannosidase, endo-alpha##AY048774|MANEA|79694|mannosidase, endo-alpha##AY048775|MANEA|79694|mannosidase, endo-alpha##BC146671|MANEA|79694|mannosidase, endo-alpha##BC150199|MANEA|79694|mannosidase, endo-alpha##CR936827|MANEA|79694|mannosidase, endo-alpha##AK291940|MANEA|79694|mannosidase, endo-alpha##BX537398|MANEA|79694|mannosidase, endo-alpha	0.011751	0.0	
chr13	87912141	87912321	reg1002481.p2	3.847	+	BX648640 BC101070 BC101071 BC101072 BC101073 NM_032229 AK292793	-1538792	-	TSC_hg19_v1_chr13_-_84456473 AB067497 NM_052910	-3455731	-	TSC_hg19_v1_chr13_-_84456424 BC051738	-3455806	-	TSC_hg19_v1_chr13_+_88324783 AK024251 NM_015567 BC098106 BC098287 BC103497 BC103509	412638	+	TSC_hg19_v1_chr13_+_92050884 BC039730 AK312815 BC030584 NM_004466	4138673	+	TSC_hg19_v1_chr13_+_93879583 NM_005708 AF105267 AY358462 BC106947 AK304338 AK130013 AK290144 AK074741	5967196	+	BX648640|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101070|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101071|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101072|SLITRK6|84189|SLIT and NTRK-like family, member 6##BC101073|SLITRK6|84189|SLIT and NTRK-like family, member 6##NM_032229|SLITRK6|84189|SLIT and NTRK-like family, member 6##AK292793|SLITRK6|84189|SLIT and NTRK-like family, member 6##AB067497|SLITRK1|114798|SLIT and NTRK-like family, member 1##NM_052910|SLITRK1|114798|SLIT and NTRK-like family, member 1##BC051738|SLITRK1|114798|SLIT and NTRK-like family, member 1##AK024251|SLITRK5|26050|SLIT and NTRK-like family, member 5##NM_015567|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098106|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC098287|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103497|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC103509|SLITRK5|26050|SLIT and NTRK-like family, member 5##BC039730|GPC5|2262|glypican 5##AK312815|GPC5|2262|glypican 5##BC030584|GPC5|2262|glypican 5##NM_004466|GPC5|2262|glypican 5##NM_005708|GPC6|10082|glypican 6##AF105267|GPC6|10082|glypican 6##AY358462|GPC6|10082|glypican 6##BC106947|GPC6|10082|glypican 6##AK304338|GPC6|10082|glypican 6##AK130013|GPC6|10082|glypican 6##AK290144|GPC6|10082|glypican 6##AK074741|GPC6|10082|glypican 6	0.351166	0.0	
chr14	75302468	75302601	reg1010593.p1	3.847	+	TSC_hg19_v1_chr14_+_75283667 BC023570	-18834	+	TSC_hg19_v1_chr14_+_75230066 AK095760 NM_019589	-72502	+	TSC_hg19_v1_chr14_+_75179883 NM_015962 AK290666 BC022361 AK021636 BC080600 BX248271	-122659	+	BC105720 BC105721 BC105927 NM_001080408 NM_001243007	28001	-	TSC_hg19_v1_chr14_+_75348624 NM_001244883 NM_001933 AK289414 BX248276 AK299505 AK316463 AK300396 BC000302 BC001922 BC002735 BX248764 D16373 CR456727 CU674146 L37418 BX248774	46091	+	NM_031464	86610	-	BC023570|YLPM1|56252|YLP motif containing 1##AK095760|YLPM1|56252|YLP motif containing 1##NM_019589|YLPM1|56252|YLP motif containing 1##NM_015962|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK290666|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC022361|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##AK021636|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC080600|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BX248271|FCF1|51077|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)##BC105720|PROX2|283571|prospero homeobox 2##BC105721|PROX2|283571|prospero homeobox 2##BC105927|PROX2|283571|prospero homeobox 2##NM_001080408|PROX2|283571|prospero homeobox 2##NM_001243007|PROX2|283571|prospero homeobox 2##NM_001244883|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_001933|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK289414|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248276|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK299505|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK316463|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##AK300396|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC000302|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC001922|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BC002735|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248764|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##D16373|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##CR456727|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##L37418|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##BX248774|DLST|1743|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)##NM_031464|RPS6KL1|83694|ribosomal protein S6 kinase-like 1	0.101751	0.0	
chr5	17282640	17282707	reg1011617.p2	3.847	+	TSC_hg19_v1_chr5_+_17217804 AF039656	-64833	+	TSC_hg19_v1_chr5_+_17217739 AK295995 AK314152 NM_006317 BC000518	-65061	+	AB018342 BC150285 TSC_hg19_v1_chr5_-_16936386 BC014956 NM_012334	-346288	-	AK295087 BC031051 NM_001167667 NM_004934	2705649	-	TSC_hg19_v1_chr5_+_21459621 AK290693	4176936	+	BC070045 TSC_hg19_v1_chr5_+_21459633 BC147000 BC038977 BC052307 BC094818 AK095656	4176975	+	AF039656|BASP1|10409|brain abundant, membrane attached signal protein 1##AK295995|BASP1|10409|brain abundant, membrane attached signal protein 1##AK314152|BASP1|10409|brain abundant, membrane attached signal protein 1##NM_006317|BASP1|10409|brain abundant, membrane attached signal protein 1##BC000518|BASP1|10409|brain abundant, membrane attached signal protein 1##AB018342|MYO10|4651|myosin X##BC150285|MYO10|4651|myosin X##BC014956|MYO10|4651|myosin X##NM_012334|MYO10|4651|myosin X##AK295087|CDH18|1016|cadherin 18, type 2##BC031051|CDH18|1016|cadherin 18, type 2##NM_001167667|CDH18|1016|cadherin 18, type 2##NM_004934|CDH18|1016|cadherin 18, type 2##AK290693|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC070045|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC147000|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC038977|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC052307|GUSBP1|728411|glucuronidase, beta pseudogene 1##BC094818|GUSBP1|728411|glucuronidase, beta pseudogene 1##AK095656|GUSBP1|728411|glucuronidase, beta pseudogene 1	0.267153	0.0	
chr7	33084829	33084957	reg1010292.p2	3.847	+	BC015856 NM_001166118 NM_016489	-4374	-	TSC_hg19_v1_chr7_+_32997051 NM_007270 AK075331 AK128597 AK300328 AK293954 AK294266 BC101723 BC112053 AF089745	-87741	+	AF274938 TSC_hg19_v1_chr7_-_32982789 BC050570 BC036907	-102189	-	TSC_hg19_v1_chr7_-_33102389 AF151067 BC013292 CR533518 AB528196 AM393481 BC066914 AF312735 AK290118 AL136716 BC071652 AK314109 NM_001002010	17429	-	TSC_hg19_v1_chr7_-_33149058 EU447007 BC025928 NM_203288	64084	-	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	84188	+	BC015856|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001166118|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_016489|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_007270|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK075331|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK128597|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK300328|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK293954|FKBP9|11328|FK506 binding protein 9, 63 kDa##AK294266|FKBP9|11328|FK506 binding protein 9, 63 kDa##BC101723|FKBP9|11328|FK506 binding protein 9, 63 kDa##BC112053|FKBP9|11328|FK506 binding protein 9, 63 kDa##AF089745|FKBP9|11328|FK506 binding protein 9, 63 kDa##AF274938|RP9P|441212|retinitis pigmentosa 9 pseudogene##BC050570|RP9P|441212|retinitis pigmentosa 9 pseudogene##BC036907|RP9P|441212|retinitis pigmentosa 9 pseudogene##AF151067|NT5C3|51251|5'-nucleotidase, cytosolic III##BC013292|NT5C3|51251|5'-nucleotidase, cytosolic III##CR533518|NT5C3|51251|5'-nucleotidase, cytosolic III##AM393481|NT5C3|51251|5'-nucleotidase, cytosolic III##BC066914|NT5C3|51251|5'-nucleotidase, cytosolic III##AF312735|NT5C3|51251|5'-nucleotidase, cytosolic III##AK290118|NT5C3|51251|5'-nucleotidase, cytosolic III##AL136716|NT5C3|51251|5'-nucleotidase, cytosolic III##BC071652|NT5C3|51251|5'-nucleotidase, cytosolic III##AK314109|NT5C3|51251|5'-nucleotidase, cytosolic III##NM_001002010|NT5C3|51251|5'-nucleotidase, cytosolic III##EU447007|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##BC025928|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_203288|RP9|6100|retinitis pigmentosa 9 (autosomal dominant)##NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9	0.0	0.0	
chr9	75758266	75758332	reg1018905.p1	3.847	+	NM_000689	-190067	-	AB587538 AF003341 AY390731 BT006921 DQ890669 DQ893850 BC001505 TSC_hg19_v1_chr9_-_75567970 AB209821 AK000118 AK026641 AK302168	-190354	-	AF417578 NM_138691	-621583	+	TSC_hg19_v1_chr9_+_75766780 AK296808 AK311684 BC035993 NM_000700 X05908	8479	+	TSC_hg19_v1_chr9_+_75766797 BC001275	8504	+	NM_006914 BC051830 Y08639	1353975	+	NM_000689|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AF003341|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AY390731|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##BT006921|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##DQ890669|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##DQ893850|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##BC001505|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AB209821|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK000118|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK026641|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AK302168|ALDH1A1|216|aldehyde dehydrogenase 1 family, member A1##AF417578|TMC1|117531|transmembrane channel-like 1##NM_138691|TMC1|117531|transmembrane channel-like 1##AK296808|ANXA1|301|annexin A1##BC035993|ANXA1|301|annexin A1##NM_000700|ANXA1|301|annexin A1##X05908|ANXA1|301|annexin A1##BC001275|ANXA1|301|annexin A1##NM_006914|RORB|6096|RAR-related orphan receptor B##BC051830|RORB|6096|RAR-related orphan receptor B##Y08639|RORB|6096|RAR-related orphan receptor B	0.048296	0.0	
chr16	74735017	74735188	reg1015192.p1	3.846	+	BC028141 AK091708 AX747141 NM_001142497 NM_152649	-365	-	TSC_hg19_v1_chr16_-_74700775 NM_018124	-34325	-	TSC_hg19_v1_chr16_-_74700758 AK291200	-34350	-	TSC_hg19_v1_chr16_-_74808693 AK315512 BC002679 BC004263	73483	-	BC017049 TSC_hg19_v1_chr16_-_74808722 AK058016 AK303878 NM_024306	73622	-	CU678744 TSC_hg19_v1_chr16_-_75018978 BC004519	283857	-	BC028141|MLKL|197259|mixed lineage kinase domain-like##AK091708|MLKL|197259|mixed lineage kinase domain-like##NM_001142497|MLKL|197259|mixed lineage kinase domain-like##NM_152649|MLKL|197259|mixed lineage kinase domain-like##NM_018124|RFWD3|55159|ring finger and WD repeat domain 3##AK291200|RFWD3|55159|ring finger and WD repeat domain 3##AK315512|FA2H|79152|fatty acid 2-hydroxylase##BC002679|FA2H|79152|fatty acid 2-hydroxylase##BC004263|FA2H|79152|fatty acid 2-hydroxylase##BC017049|FA2H|79152|fatty acid 2-hydroxylase##AK058016|FA2H|79152|fatty acid 2-hydroxylase##AK303878|FA2H|79152|fatty acid 2-hydroxylase##NM_024306|FA2H|79152|fatty acid 2-hydroxylase##BC004519|WDR59|79726|WD repeat domain 59	0.0	0.0	
chr4	107444170	107444260	reg1016909.p2	3.846	+	NM_001195138	-155624	-	AK074305 NM_001163436	-206388	-	TSC_hg19_v1_chr4_+_107237727 U10117	-206485	+	NM_014421 AF177395	513237	-	BC011392 AF016496 CR457028 CU690750 BC040940 TSC_hg19_v1_chr4_-_108641372 BC050627 AF033026 AK292774 AK297981 Y10387 BC032513 AF105227 NM_005443	1197149	-	AK290344 NM_001136258 AF452717	1301552	+	NM_001195138|LOC100507096|100507096|GTPase IMAP family member-like##AK074305|TBCK|93627|TBC1 domain containing kinase##NM_001163436|TBCK|93627|TBC1 domain containing kinase##U10117|AIMP1|9255|aminoacyl tRNA synthetase complex-interacting multifunctional protein 1##NM_014421|DKK2|27123|dickkopf 2 homolog (Xenopus laevis)##AF177395|DKK2|27123|dickkopf 2 homolog (Xenopus laevis)##BC011392|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AF016496|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##CR457028|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##BC040940|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##BC050627|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AF033026|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AK292774|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AK297981|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##Y10387|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##BC032513|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AF105227|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##NM_005443|PAPSS1|9061|3'-phosphoadenosine 5'-phosphosulfate synthase 1##AK290344|SGMS2|166929|sphingomyelin synthase 2##NM_001136258|SGMS2|166929|sphingomyelin synthase 2##AF452717|SGMS2|166929|sphingomyelin synthase 2	1.023261	0.896773	denovo_WM_7:16:0.841	CTCF.p2:-36:0.897
chr8	29666836	29666939	reg1013465.p1	3.846	+	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	-458817	-	AL137704 NM_057158	-460566	-	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-546273	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	273587	-	TSC_hg19_v1_chr8_-_29940580 Z70223 BC015012 AF078855 AB028926 AK295360 AK075340 AK314659 AK025927 AY359104 NM_016127 AK094386	273685	-	NM_001128208 NM_015344 TSC_hg19_v1_chr8_+_29952935 BC000642 AF063605 AY277595 AY358674	286056	+	EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66##Z70223|TMEM66|51669|transmembrane protein 66##BC015012|TMEM66|51669|transmembrane protein 66##AF078855|TMEM66|51669|transmembrane protein 66##AB028926|TMEM66|51669|transmembrane protein 66##AK295360|TMEM66|51669|transmembrane protein 66##AK075340|TMEM66|51669|transmembrane protein 66##AK314659|TMEM66|51669|transmembrane protein 66##AK025927|TMEM66|51669|transmembrane protein 66##AY359104|TMEM66|51669|transmembrane protein 66##NM_016127|TMEM66|51669|transmembrane protein 66##AK094386|TMEM66|51669|transmembrane protein 66##NM_001128208|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##NM_015344|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##BC000642|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AF063605|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY277595|LEPROTL1|23484|leptin receptor overlapping transcript-like 1##AY358674|LEPROTL1|23484|leptin receptor overlapping transcript-like 1	0.010129	0.0	
chr9	132766178	132766320	reg1013295.p1	3.846	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-168484	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-168527	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-168565	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	39105	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	39239	-	BC039728 NM_001136557 NM_001136558 NM_020960	49735	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.09303	0.0	
chrX	135013965	135014043	reg1017505.p2	3.846	+	AJ278111 NM_018666 AK310412 BC144260	-38170	+	BC140913 BC144429 BC144430 BC140735 BC140926 BC144437 AK098689 AY743714 NM_001017438	-42812	-	BC144527 BC144528 AY743713 NM_001007551 NM_001172288	-60059	-	AB528252 AM393753 TSC_hg19_v1_chrX_-_135055928	41881	-	AL157477 BC033588 NM_173470 TSC_hg19_v1_chrX_-_135056148 AK312409 AK295829	42155	-	TSC_hg19_v1_chrX_+_135067627 NM_001177651 NM_001042537 NM_006359 AK300475 AK316255 AK314562 AF030409 BC035029	53598	+	AJ278111|SAGE1|55511|sarcoma antigen 1##NM_018666|SAGE1|55511|sarcoma antigen 1##AK310412|SAGE1|55511|sarcoma antigen 1##BC144260|SAGE1|55511|sarcoma antigen 1##BC140913|CT45A1|541466|cancer/testis antigen family 45, member A1##BC144429|CT45A5|441521|cancer/testis antigen family 45, member A5##BC144430|CT45A5|441521|cancer/testis antigen family 45, member A5##BC140735|CT45A3|441519|cancer/testis antigen family 45, member A3##BC140926|CT45A3|441519|cancer/testis antigen family 45, member A3##BC144437|CT45A3|441519|cancer/testis antigen family 45, member A3##AK098689|CT45A4|441520|cancer/testis antigen family 45, member A4##AY743714|CT45A6|541465|cancer/testis antigen family 45, member A6##NM_001017438|CT45A6|541465|cancer/testis antigen family 45, member A6##BC144527|CT45A5|441521|cancer/testis antigen family 45, member A5##BC144528|CT45A5|441521|cancer/testis antigen family 45, member A5##AY743713|CT45A5|441521|cancer/testis antigen family 45, member A5##NM_001007551|CT45A5|441521|cancer/testis antigen family 45, member A5##NM_001172288|CT45A5|441521|cancer/testis antigen family 45, member A5##AM393753|MMGT1|93380|membrane magnesium transporter 1##AL157477|MMGT1|93380|membrane magnesium transporter 1##BC033588|MMGT1|93380|membrane magnesium transporter 1##NM_173470|MMGT1|93380|membrane magnesium transporter 1##AK312409|MMGT1|93380|membrane magnesium transporter 1##AK295829|MMGT1|93380|membrane magnesium transporter 1##NM_001177651|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##NM_001042537|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##NM_006359|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##AK300475|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##AK316255|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##AK314562|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##AF030409|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6##BC035029|SLC9A6|10479|solute carrier family 9 (sodium/hydrogen exchanger), member 6	0.291199	0.0	denovo_WM_7:-100:0.207
chrX	46795323	46795422	reg1006993.p2	3.846	+	TSC_hg19_v1_chrX_+_46771855 AK291220 NM_001077445 D86969 NM_014735 BC113880 BC114487 AF127774	-23437	+	TSC_hg19_v1_chrX_+_46696479 AK312555 CU692158	-98868	+	BC043348 BC053530 TSC_hg19_v1_chrX_+_46696426	-98946	+	TSC_hg19_v1_chrX_+_46937753 AK223360 NM_004683 NM_152869	142387	+	TSC_hg19_v1_chrX_+_46937812 BC050371 BC058880 AK290136	142465	+	TSC_hg19_v1_chrX_+_46937889 BC073173 AB032064	142558	+	AK291220|PHF16|9767|PHD finger protein 16##NM_001077445|PHF16|9767|PHD finger protein 16##D86969|PHF16|9767|PHD finger protein 16##NM_014735|PHF16|9767|PHD finger protein 16##BC113880|PHF16|9767|PHD finger protein 16##BC114487|PHF16|9767|PHD finger protein 16##AF127774|PHF16|9767|PHD finger protein 16##AK312555|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC043348|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##BC053530|RP2|6102|retinitis pigmentosa 2 (X-linked recessive)##AK223360|RGN|9104|regucalcin (senescence marker protein-30)##NM_004683|RGN|9104|regucalcin (senescence marker protein-30)##NM_152869|RGN|9104|regucalcin (senescence marker protein-30)##BC050371|RGN|9104|regucalcin (senescence marker protein-30)##BC058880|RGN|9104|regucalcin (senescence marker protein-30)##AK290136|RGN|9104|regucalcin (senescence marker protein-30)##BC073173|RGN|9104|regucalcin (senescence marker protein-30)##AB032064|RGN|9104|regucalcin (senescence marker protein-30)	2.330701	0.0	denovo_WM_7:47:0.336
chr1	101185095	101185188	reg1014395.p1	3.845	+	AK225748 TSC_hg19_v1_chr1_+_101004594	-180613	+	AB042410 BC036775 NM_022049	-181432	+	BC071578 TSC_hg19_v1_chr1_+_100818053 AF064103 AK310657 AF000367	-367038	+	NM_001078 NM_001199834 NM_080682 TSC_hg19_v1_chr1_+_101185297 AK223266 AK291732 AK296692 BC068490 M30257 BC017276 BC085003 M60335 AB590609 EU831989 EU832082 X53051 CU686647	165	+	TSC_hg19_v1_chr1_-_101360249 BC014910	175126	-	TSC_hg19_v1_chr1_-_101360368 AK312895 AB009284 AF000416 AK096914 BC036015 AK298124 BC001649 BC001835 BC008722	175229	-	AK225748|GPR88|54112|G protein-coupled receptor 88##AB042410|GPR88|54112|G protein-coupled receptor 88##BC036775|GPR88|54112|G protein-coupled receptor 88##NM_022049|GPR88|54112|G protein-coupled receptor 88##BC071578|CDC14A|8556|CDC14 cell division cycle 14 homolog A (S. cerevisiae)##AF064103|CDC14A|8556|CDC14 cell division cycle 14 homolog A (S. cerevisiae)##AK310657|CDC14A|8556|CDC14 cell division cycle 14 homolog A (S. cerevisiae)##AF000367|CDC14A|8556|CDC14 cell division cycle 14 homolog A (S. cerevisiae)##NM_001078|VCAM1|7412|vascular cell adhesion molecule 1##NM_001199834|VCAM1|7412|vascular cell adhesion molecule 1##NM_080682|VCAM1|7412|vascular cell adhesion molecule 1##AK223266|VCAM1|7412|vascular cell adhesion molecule 1##AK291732|VCAM1|7412|vascular cell adhesion molecule 1##AK296692|VCAM1|7412|vascular cell adhesion molecule 1##BC068490|VCAM1|7412|vascular cell adhesion molecule 1##M30257|VCAM1|7412|vascular cell adhesion molecule 1##BC017276|VCAM1|7412|vascular cell adhesion molecule 1##BC085003|VCAM1|7412|vascular cell adhesion molecule 1##M60335|VCAM1|7412|vascular cell adhesion molecule 1##EU831989|VCAM1|7412|vascular cell adhesion molecule 1##EU832082|VCAM1|7412|vascular cell adhesion molecule 1##X53051|VCAM1|7412|vascular cell adhesion molecule 1##BC014910|EXTL2|2135|exostoses (multiple)-like 2##AK312895|EXTL2|2135|exostoses (multiple)-like 2##AB009284|EXTL2|2135|exostoses (multiple)-like 2##AF000416|EXTL2|2135|exostoses (multiple)-like 2##AK096914|EXTL2|2135|exostoses (multiple)-like 2##BC036015|EXTL2|2135|exostoses (multiple)-like 2##AK298124|EXTL2|2135|exostoses (multiple)-like 2	0.0	0.0	
chr1	156195322	156195449	reg1007070.p1	3.845	+	TSC_hg19_v1_chr1_+_156182797 NM_001199653 NM_001199654 NM_001199661 NM_001199662 NM_001199663 NM_001199664 NM_007221 AK124646 AK307287 AK022523 AK289490 AK290260 AK310694 BC033656 BC065031 AB464036 CU688008 DQ890582 DQ893741 EU832507 EU832588 AL080101 BC056417 AF141310 BC050735	-12591	+	TSC_hg19_v1_chr1_+_156163911 AB007915 BC039854	-31467	+	TSC_hg19_v1_chr1_+_156163907 AK074912 AK299747 AK307968 AK309678 AK309690 BC008843 AK075002 AK294524 AK293778	-31493	+	BC113432 BC113434 NM_199173 X51699 X53698 HQ258037	16599	+	AK294143 BC058509 NM_198406 AF455047 AF455045 AY424284 TSC_hg19_v1_chr1_-_156217848 AK095197 NM_024897 AK095143 AF455046 AK054682 AK094346 AK316034 AK295915 AK295916	22405	-	AY336728 AB384108 AY168922 AB085691 TSC_hg19_v1_chr1_-_156252597 AK092183 AX747396	57150	-	NM_001199653|PMF1|11243|polyamine-modulated factor 1##NM_001199654|PMF1|11243|polyamine-modulated factor 1##NM_001199661|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199662|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199663|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_001199664|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##NM_007221|PMF1|11243|polyamine-modulated factor 1##AK124646|PMF1|11243|polyamine-modulated factor 1##AK307287|PMF1|11243|polyamine-modulated factor 1##AK022523|PMF1|11243|polyamine-modulated factor 1##AK289490|PMF1|11243|polyamine-modulated factor 1##AK290260|PMF1|11243|polyamine-modulated factor 1##AK310694|PMF1|11243|polyamine-modulated factor 1##BC033656|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##BC065031|PMF1|11243|polyamine-modulated factor 1##DQ890582|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##DQ893741|PMF1-BGLAP|100527963|PMF1-BGLAP readthrough##EU832507|PMF1|11243|polyamine-modulated factor 1##EU832588|PMF1|11243|polyamine-modulated factor 1##AL080101|PMF1|11243|polyamine-modulated factor 1##BC056417|PMF1|11243|polyamine-modulated factor 1##AF141310|PMF1|11243|polyamine-modulated factor 1##BC050735|PMF1|11243|polyamine-modulated factor 1##AB007915|SLC25A44|9673|solute carrier family 25, member 44##BC039854|SLC25A44|9673|solute carrier family 25, member 44##AK074912|SLC25A44|9673|solute carrier family 25, member 44##AK299747|SLC25A44|9673|solute carrier family 25, member 44##AK307968|SLC25A44|9673|solute carrier family 25, member 44##AK309678|SLC25A44|9673|solute carrier family 25, member 44##AK309690|SLC25A44|9673|solute carrier family 25, member 44##BC008843|SLC25A44|9673|solute carrier family 25, member 44##AK075002|SLC25A44|9673|solute carrier family 25, member 44##AK294524|SLC25A44|9673|solute carrier family 25, member 44##BC113432|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##BC113434|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##NM_199173|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##X51699|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##X53698|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##HQ258037|BGLAP|632|bone gamma-carboxyglutamate (gla) protein##AK294143|PAQR6|79957|progestin and adipoQ receptor family member VI##BC058509|PAQR6|79957|progestin and adipoQ receptor family member VI##NM_198406|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455047|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455045|PAQR6|79957|progestin and adipoQ receptor family member VI##AY424284|PAQR6|79957|progestin and adipoQ receptor family member VI##AK095197|PAQR6|79957|progestin and adipoQ receptor family member VI##NM_024897|PAQR6|79957|progestin and adipoQ receptor family member VI##AK095143|PAQR6|79957|progestin and adipoQ receptor family member VI##AF455046|PAQR6|79957|progestin and adipoQ receptor family member VI##AK054682|PAQR6|79957|progestin and adipoQ receptor family member VI##AK094346|PAQR6|79957|progestin and adipoQ receptor family member VI##AK316034|PAQR6|79957|progestin and adipoQ receptor family member VI##AK295915|PAQR6|79957|progestin and adipoQ receptor family member VI##AK295916|PAQR6|79957|progestin and adipoQ receptor family member VI##AY336728|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AY168922|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB085691|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK092183|SMG5|23381|smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	0.0	0.990954	CTCF.p2:10:0.991
chr1	168978970	168979145	reg1017646.p2	3.845	+	DQ892055 DQ895249 Z22865 BC021212 BC033736 AK292596 TSC_hg19_v1_chr1_-_168698441 NM_001937	-280628	-	NM_002995 BC070309 X86474 D43768 BC069817 U23772 CU687088	-433265	+	BC069360 CU686769 AB590623 U23772 BC070308 NM_003175	-465840	-	TSC_hg19_v1_chr1_+_169075932 AK290181 NM_001677 BC000006 U16799 AB463423 AY545986 BT009787 CR407616	96912	+	TSC_hg19_v1_chr1_-_169337033 AB209049 BC006983 AK290701 AF153191 AK094513 AK301917 NM_013330 NM_197972	358035	-	NM_003666 AF288161 U79751 AK223533	358166	+	DQ892055|DPT|1805|dermatopontin##DQ895249|DPT|1805|dermatopontin##Z22865|DPT|1805|dermatopontin##BC033736|DPT|1805|dermatopontin##NM_001937|DPT|1805|dermatopontin##NM_002995|XCL1|6375|chemokine (C motif) ligand 1##BC070309|XCL1|6375|chemokine (C motif) ligand 1##X86474|XCL1|6375|chemokine (C motif) ligand 1##D43768|XCL1|6375|chemokine (C motif) ligand 1##BC069817|XCL1|6375|chemokine (C motif) ligand 1##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC069360|XCL2|6846|chemokine (C motif) ligand 2##U23772|XCL1|6375|chemokine (C motif) ligand 1##BC070308|XCL2|6846|chemokine (C motif) ligand 2##NM_003175|XCL2|6846|chemokine (C motif) ligand 2##AK290181|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##NM_001677|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BC000006|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##U16799|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AY545986|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##BT009787|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##CR407616|ATP1B1|481|ATPase, Na+/K+ transporting, beta 1 polypeptide##AB209049|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##BC006983|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK290701|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AF153191|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK094513|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##AK301917|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_013330|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_197972|NME7|29922|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)##NM_003666|BLZF1|8548|basic leucine zipper nuclear factor 1##AF288161|BLZF1|8548|basic leucine zipper nuclear factor 1##U79751|BLZF1|8548|basic leucine zipper nuclear factor 1##AK223533|BLZF1|8548|basic leucine zipper nuclear factor 1	0.0	0.0	
chr16	48437346	48437442	reg1012694.p2	3.845	+	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-18142	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-37603	-	BC042550 TSC_hg19_v1_chr16_-_48399765	-37634	-	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	206722	-	AB527638 TSC_hg19_v1_chr16_-_49315397	877999	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	878106	-	BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor	0.987159	0.0	denovo_WM_7:30:0.896
chr17	16969924	16970035	reg1012447.p1	3.845	+	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	-24015	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-94575	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-376375	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	139634	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	139678	-	TSC_hg19_v1_chr17_-_17140464 AF517523 BC015687	170466	-	NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6##AF517523|FLCN|201163|folliculin##BC015687|FLCN|201163|folliculin	2.985819	0.0	denovo_WM_7:64:0.203	denovo_WM_7:65:0.547	denovo_WM_7:80:0.445	denovo_WM_7:81:0.405	denovo_WM_7:95:0.269	denovo_WM_7:96:0.673
chr20	5632710	5632890	reg1012756.p2	3.845	+	TSC_hg19_v1_chr20_-_5591598 AB037855 AK308111 BC027588 NM_019593	-41213	-	AB084081 AF506288 EF577398 NM_144773 AB385531 BC104959 BC104961	-337764	-	TSC_hg19_v1_chr20_+_5107653 AK091045 AK001414 BC025751 AK027695 AB529066 DQ891643 DQ894832	-525105	+	TSC_hg19_v1_chr20_+_5731046 AK057796 BC035800 NM_152504 AK292708 AK310715	98266	+	NM_001819 TSC_hg19_v1_chr20_+_5892155 AK289386 AK312237 AK225125 AK293536 Y00064 BC000375 AB209712 AB385015 DQ891415 EU176635 EU831479 EU831566 CR456726	259326	+	TSC_hg19_v1_chr20_-_5931136 AK300812 AB385432 AB032979 BC001262 AK000613 AK308648 AF132943 NM_015939 AK309205	298323	-	AB037855|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AK308111|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##BC027588|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##NM_019593|GPCPD1|56261|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)##AB084081|PROKR2|128674|prokineticin receptor 2##AF506288|PROKR2|128674|prokineticin receptor 2##EF577398|PROKR2|128674|prokineticin receptor 2##NM_144773|PROKR2|128674|prokineticin receptor 2##BC104959|PROKR2|128674|prokineticin receptor 2##BC104961|PROKR2|128674|prokineticin receptor 2##AK091045|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK001414|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##BC025751|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK027695|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ891643|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##DQ894832|CDS2|8760|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2##AK057796|C20orf196|149840|chromosome 20 open reading frame 196##BC035800|C20orf196|149840|chromosome 20 open reading frame 196##NM_152504|C20orf196|149840|chromosome 20 open reading frame 196##AK292708|C20orf196|149840|chromosome 20 open reading frame 196##NM_001819|CHGB|1114|chromogranin B (secretogranin 1)##AK289386|CHGB|1114|chromogranin B (secretogranin 1)##AK312237|CHGB|1114|chromogranin B (secretogranin 1)##AK225125|CHGB|1114|chromogranin B (secretogranin 1)##AK293536|CHGB|1114|chromogranin B (secretogranin 1)##Y00064|CHGB|1114|chromogranin B (secretogranin 1)##BC000375|CHGB|1114|chromogranin B (secretogranin 1)##AB209712|CHGB|1114|chromogranin B (secretogranin 1)##DQ891415|CHGB|1114|chromogranin B (secretogranin 1)##EU176635|CHGB|1114|chromogranin B (secretogranin 1)##EU831479|CHGB|1114|chromogranin B (secretogranin 1)##EU831566|CHGB|1114|chromogranin B (secretogranin 1)##CR456726|CHGB|1114|chromogranin B (secretogranin 1)##AK300812|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AB032979|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##BC001262|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK000613|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK308648|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AF132943|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##NM_015939|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)##AK309205|TRMT6|51605|tRNA methyltransferase 6 homolog (S. cerevisiae)	0.0	0.0	
chr3	55756274	55756368	reg1010178.p2	3.845	+	TSC_hg19_v1_chr3_-_55521567 AK090582	-234703	-	BC064694 NM_003392 AK290375 TSC_hg19_v1_chr3_-_55521332	-234989	-	AK290869 TSC_hg19_v1_chr3_-_55515412	-240913	-	BC111550 BC112391 AB002376 NM_015576	746056	-	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	834881	+	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	834925	+	AK090582|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC064694|WNT5A|7474|wingless-type MMTV integration site family, member 5A##NM_003392|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290375|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290869|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC111550|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##BC112391|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##AB002376|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_015576|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66	0.407812	0.0	denovo_WM_7:-47:0.206
chrX	78405209	78405356	reg1013910.p1	3.845	+	NM_014499 NM_198333 AK313218 AK292138 BC051875	-204410	+	NM_005296 AK314134	-402074	+	AK096184 NM_152694	-490458	-	AF345567 BC104922 BC104924 NM_032553	21186	+	CR456875 CU691874 EU446983 AY359051 AB209310 BC040437 BC010511 TSC_hg19_v1_chrX_-_78622829 AK223327 AK303238 AF038953 BC034485	217501	-	AK313154 NM_001171581 NM_004867	217745	-	NM_014499|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_198333|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK313218|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##AK292138|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##BC051875|P2RY10|27334|purinergic receptor P2Y, G-protein coupled, 10##NM_005296|LPAR4|2846|lysophosphatidic acid receptor 4##AK314134|LPAR4|2846|lysophosphatidic acid receptor 4##AK096184|ZCCHC5|203430|zinc finger, CCHC domain containing 5##NM_152694|ZCCHC5|203430|zinc finger, CCHC domain containing 5##AF345567|GPR174|84636|G protein-coupled receptor 174##BC104922|GPR174|84636|G protein-coupled receptor 174##BC104924|GPR174|84636|G protein-coupled receptor 174##NM_032553|GPR174|84636|G protein-coupled receptor 174##CR456875|ITM2A|9452|integral membrane protein 2A##EU446983|ITM2A|9452|integral membrane protein 2A##AY359051|ITM2A|9452|integral membrane protein 2A##AB209310|ITM2A|9452|integral membrane protein 2A##BC040437|ITM2A|9452|integral membrane protein 2A##BC010511|ITM2A|9452|integral membrane protein 2A##AK223327|ITM2A|9452|integral membrane protein 2A##AK303238|ITM2A|9452|integral membrane protein 2A##AF038953|ITM2A|9452|integral membrane protein 2A##BC034485|ITM2A|9452|integral membrane protein 2A##AK313154|ITM2A|9452|integral membrane protein 2A##NM_001171581|ITM2A|9452|integral membrane protein 2A##NM_004867|ITM2A|9452|integral membrane protein 2A	0.996212	0.0	denovo_WM_7:44:0.249	denovo_WM_7:45:0.249	denovo_WM_7:46:0.249	denovo_WM_7:47:0.249
chr1	179184789	179184924	reg1014735.p2	3.844	+	FJ542283 BC065912 AK225255 TSC_hg19_v1_chr1_-_179112210 AK309549 NM_001136000 NM_001168239 NM_005158	-72656	-	TSC_hg19_v1_chr1_+_179051236 BC011746 AK316530 AK299966 CU675711 CU676228 CR457354	-133608	+	BC088368 BC001085 TSC_hg19_v1_chr1_+_179051232 BC018292 AJ299403 AJ299441 BC007571 AK025998	-133631	+	M35296 TSC_hg19_v1_chr1_-_179198813	13918	-	TSC_hg19_v1_chr1_-_179198815 AK311045 NM_001136001 NM_001168236 NM_001168237 NM_001168238 NM_007314	13963	-	NM_001252511 NM_001252512 NM_003101 TSC_hg19_v1_chr1_+_179262876	78010	+	FJ542283|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##BC065912|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##AK225255|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##AK309549|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001136000|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168239|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_005158|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##BC011746|TOR3A|64222|torsin family 3, member A##AK316530|TOR3A|64222|torsin family 3, member A##AK299966|TOR3A|64222|torsin family 3, member A##CR457354|TOR3A|64222|torsin family 3, member A##BC088368|TOR3A|64222|torsin family 3, member A##BC001085|TOR3A|64222|torsin family 3, member A##BC018292|TOR3A|64222|torsin family 3, member A##AJ299403|TOR3A|64222|torsin family 3, member A##AJ299441|TOR3A|64222|torsin family 3, member A##BC007571|TOR3A|64222|torsin family 3, member A##AK025998|TOR3A|64222|torsin family 3, member A##M35296|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##AK311045|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001136001|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168236|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168237|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001168238|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_007314|ABL2|27|v-abl Abelson murine leukemia viral oncogene homolog 2##NM_001252511|SOAT1|6646|sterol O-acyltransferase 1##NM_001252512|SOAT1|6646|sterol O-acyltransferase 1##NM_003101|SOAT1|6646|sterol O-acyltransferase 1	0.98699	0.0	denovo_WM_7:-17:0.916
chr16	29713616	29713796	reg1017007.p2	3.844	+	TSC_hg19_v1_chr16_+_29690500 BC018910 BC005060 BC010033	-23224	+	AK293195 NM_014298 TSC_hg19_v1_chr16_+_29690460	-23312	+	TSC_hg19_v1_chr16_+_29674982 AB464706 DQ892262 DQ895464	-38692	+	TSC_hg19_v1_chr16_-_29757289 BC025741 BC104466 BC104467 AY358833 AK093000 AX747848 NM_175900	43595	-	NM_152338 BC150656 TSC_hg19_v1_chr16_+_29789605 AK125559 AK312002	75880	+	TSC_hg19_v1_chr16_+_29802051 AK312234 AK223431 AK297893 AB017430 NM_007317 BC004352	88345	+	BC018910|QPRT|23475|quinolinate phosphoribosyltransferase##BC005060|QPRT|23475|quinolinate phosphoribosyltransferase##BC010033|QPRT|23475|quinolinate phosphoribosyltransferase##AK293195|QPRT|23475|quinolinate phosphoribosyltransferase##NM_014298|QPRT|23475|quinolinate phosphoribosyltransferase##DQ892262|SPN|6693|sialophorin##DQ895464|SPN|6693|sialophorin##BC025741|C16orf54|283897|chromosome 16 open reading frame 54##BC104466|C16orf54|283897|chromosome 16 open reading frame 54##BC104467|C16orf54|283897|chromosome 16 open reading frame 54##AY358833|C16orf54|283897|chromosome 16 open reading frame 54##AK093000|C16orf54|283897|chromosome 16 open reading frame 54##NM_175900|C16orf54|283897|chromosome 16 open reading frame 54##NM_152338|ZG16|653808|zymogen granule protein 16 homolog (rat)##BC150656|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK125559|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312002|ZG16|653808|zymogen granule protein 16 homolog (rat)##AK312234|KIF22|3835|kinesin family member 22##AK223431|KIF22|3835|kinesin family member 22##AK297893|KIF22|3835|kinesin family member 22##AB017430|KIF22|3835|kinesin family member 22##NM_007317|KIF22|3835|kinesin family member 22##BC004352|KIF22|3835|kinesin family member 22	0.0	0.0	
chr17	42287848	42287957	reg1015780.p2	3.844	+	TSC_hg19_v1_chr17_-_42277350 AK296689	-10517	-	BC037418 HQ258188 TSC_hg19_v1_chr17_-_42275499 BC113595 BC126113 NM_001098833 NM_020218	-12426	-	TSC_hg19_v1_chr17_+_42264588 AF370373	-23285	+	AK291733 TSC_hg19_v1_chr17_-_42296871	8976	-	X56687 TSC_hg19_v1_chr17_-_42296940	9030	-	TSC_hg19_v1_chr17_-_42297051 NM_001076684 NM_014233	9142	-	AK296689|ATXN7L3|56970|ataxin 7-like 3##BC037418|ATXN7L3|56970|ataxin 7-like 3##HQ258188|ATXN7L3|56970|ataxin 7-like 3##BC113595|ATXN7L3|56970|ataxin 7-like 3##BC126113|ATXN7L3|56970|ataxin 7-like 3##NM_001098833|ATXN7L3|56970|ataxin 7-like 3##NM_020218|ATXN7L3|56970|ataxin 7-like 3##AF370373|TMUB2|79089|transmembrane and ubiquitin-like domain containing 2##AK291733|UBTF|7343|upstream binding transcription factor, RNA polymerase I##X56687|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076684|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_014233|UBTF|7343|upstream binding transcription factor, RNA polymerase I	0.0	0.123558	
chr3	174993999	174994065	reg1014092.p1	3.844	+	AJ607396 AK308416 AL832144 NM_207015 BC057243	-416942	+	TSC_hg19_v1_chr3_+_174158663 AJ607400 AJ607401	-835312	+	BC032555 NM_014932	-1877789	+	TSC_hg19_v1_chr3_-_176914267 BX648935	1920218	-	TSC_hg19_v1_chr3_-_176914952 AF268193 AK296946	1920919	-	AK022956 TSC_hg19_v1_chr3_-_176915017 BC060320 NM_024665	1921027	-	AJ607396|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AK308416|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AL832144|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##NM_207015|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC057243|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607400|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##AJ607401|NAALADL2|254827|N-acetylated alpha-linked acidic dipeptidase-like 2##BC032555|NLGN1|22871|neuroligin 1##NM_014932|NLGN1|22871|neuroligin 1##BX648935|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AF268193|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK296946|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##AK022956|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##BC060320|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1##NM_024665|TBL1XR1|79718|transducin (beta)-like 1 X-linked receptor 1	1.18885	0.0	
chr3	50149408	50149529	reg1017583.p1	3.844	+	TSC_hg19_v1_chr3_+_50126425 U23946	-23033	+	TSC_hg19_v1_chr3_+_50126354 AF091263 AK297249 AK302766 AK297445 AK314032 BC002957 AB208813 AF103802 AF107493 AB586690	-23088	+	NM_005778 TSC_hg19_v1_chr3_+_50126351	-23123	+	TSC_hg19_v1_chr3_+_50192514 AB209259	43029	+	BC042914 NM_004186 U33920	43438	+	DQ426874 NM_000172 NM_144499 X15088 BC095505 AF493908	79622	+	U23946|RBM5|10181|RNA binding motif protein 5##AF091263|RBM5|10181|RNA binding motif protein 5##AK297249|RBM5|10181|RNA binding motif protein 5##AK302766|RBM5|10181|RNA binding motif protein 5##AK297445|RBM5|10181|RNA binding motif protein 5##AK314032|RBM5|10181|RNA binding motif protein 5##BC002957|RBM5|10181|RNA binding motif protein 5##AB208813|RBM5|10181|RNA binding motif protein 5##AF103802|RBM5|10181|RNA binding motif protein 5##AF107493|RBM5|10181|RNA binding motif protein 5##AB586690|RBM5|10181|RNA binding motif protein 5##NM_005778|RBM5|10181|RNA binding motif protein 5##AB209259|SEMA3F|6405|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F##BC042914|SEMA3F|6405|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F##NM_004186|SEMA3F|6405|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F##U33920|SEMA3F|6405|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F##NM_000172|GNAT1|2779|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1##NM_144499|GNAT1|2779|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1##X15088|GNAT1|2779|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1##BC095505|GNAT1|2779|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1##AF493908|GNAT1|2779|guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1	0.98472	0.0	
chr9	19103212	19103393	reg1009770.p2	3.844	+	TSC_hg19_v1_chr9_-_19102926 AF533709	-293	-	AL832495 BC026178 TSC_hg19_v1_chr9_-_19102903 AF537091 AK056458 NM_017645	-401	-	AB527315 AM393468 BC113981 BC114492 TSC_hg19_v1_chr9_-_19102891	-532	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	24175	-	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	24246	-	NM_017925 BC144484 BC144485	187449	+	AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##AL832495|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC026178|HAUS6|54801|HAUS augmin-like complex, subunit 6##AF537091|HAUS6|54801|HAUS augmin-like complex, subunit 6##AK056458|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017645|HAUS6|54801|HAUS augmin-like complex, subunit 6##AM393468|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC113981|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC114492|HAUS6|54801|HAUS augmin-like complex, subunit 6##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C	0.996201	0.0	
chr12	39799611	39799727	reg1013301.p1	3.843	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-500286	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-1089044	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5624196	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	37330	-	AK314254 NM_005164	214173	-	BC038754 NM_001031748 BC048120 AK097445	220326	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	0.744087	0.0	denovo_WM_7:-1:0.532
chr1	27799111	27799291	reg1016216.p2	3.843	+	BC001524 BC001855 AK024540 TSC_hg19_v1_chr1_-_27732180 AY007122	-67017	-	BC032702 NM_005281 TSC_hg19_v1_chr1_+_27719158 AK291185 AK314868	-80035	+	BC137466 AY358761 NM_207397	-89409	-	TSC_hg19_v1_chr1_-_27816621 AK303011 BC032724 BC050093 BC040943	17399	-	TSC_hg19_v1_chr1_-_27816670 BC012329	17470	-	TSC_hg19_v1_chr1_-_27816676 NM_001201404 NM_006990	17475	-	BC001524|WASF2|10163|WAS protein family, member 2##BC001855|WASF2|10163|WAS protein family, member 2##AK024540|WASF2|10163|WAS protein family, member 2##AY007122|WASF2|10163|WAS protein family, member 2##BC032702|GPR3|2827|G protein-coupled receptor 3##NM_005281|GPR3|2827|G protein-coupled receptor 3##AK291185|GPR3|2827|G protein-coupled receptor 3##AK314868|GPR3|2827|G protein-coupled receptor 3##BC137466|CD164L2|388611|CD164 sialomucin-like 2##AY358761|CD164L2|388611|CD164 sialomucin-like 2##NM_207397|CD164L2|388611|CD164 sialomucin-like 2##AK303011|WASF2|10163|WAS protein family, member 2##BC032724|WASF2|10163|WAS protein family, member 2##BC040943|WASF2|10163|WAS protein family, member 2##BC012329|WASF2|10163|WAS protein family, member 2##NM_001201404|WASF2|10163|WAS protein family, member 2##NM_006990|WASF2|10163|WAS protein family, member 2	0.999096	0.0	
chr18	43676953	43677072	reg1012900.p1	3.843	+	TSC_hg19_v1_chr18_-_43669608 BC003119	-7413	-	TSC_hg19_v1_chr18_-_43668143 AK129804	-8835	-	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	-24804	-	TSC_hg19_v1_chr18_-_43678228 AB463421 BT007209 CU676424 DQ890557 DQ894210 X65460	1200	-	TSC_hg19_v1_chr18_-_43678230 BC039135 BC042694	1218	-	TSC_hg19_v1_chr18_-_43678248 BC016046 BC028335 BC011384 BC019310 BC064562 BC067385 AK098765 AK289457	1229	-	BC003119|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BT007209|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##DQ890557|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##DQ894210|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##X65460|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC039135|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC042694|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC016046|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC028335|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC011384|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC019310|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC064562|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC067385|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##AK098765|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##AK289457|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.993845	0.0	
chr19	40447683	40447863	reg1005754.p2	3.843	+	D84239 NM_003890	-7241	-	AK296950 TSC_hg19_v1_chr19_-_40337020 NM_001436	-110738	-	TSC_hg19_v1_chr19_-_40337007 BC019260 AK308649	-110767	-	TSC_hg19_v1_chr19_+_40477090 AF020736 AK313183 NM_006503 NM_153001 BC010396 AK310135 AF038965 BC000343 BC014488 BC018811 U27515 AK290285 DQ891875 DQ894876 BT007232 CU679695	29297	+	NM_178544 AK122968 AK292528 BC045649	55212	+	TSC_hg19_v1_chr19_-_40562138 AK127063 NM_001005851	114353	-	D84239|FCGBP|8857|Fc fragment of IgG binding protein##NM_003890|FCGBP|8857|Fc fragment of IgG binding protein##AK296950|FBL|2091|fibrillarin##NM_001436|FBL|2091|fibrillarin##BC019260|FBL|2091|fibrillarin##AK308649|FBL|2091|fibrillarin##AF020736|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK313183|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_006503|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_153001|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC010396|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK310135|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AF038965|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC000343|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC014488|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BC018811|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##U27515|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##AK290285|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ891875|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##DQ894876|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##BT007232|PSMC4|5704|proteasome (prosome, macropain) 26S subunit, ATPase, 4##NM_178544|ZNF546|339327|zinc finger protein 546##AK122968|ZNF546|339327|zinc finger protein 546##AK292528|ZNF546|339327|zinc finger protein 546##BC045649|ZNF546|339327|zinc finger protein 546##AK127063|ZNF780B|163131|zinc finger protein 780B##NM_001005851|ZNF780B|163131|zinc finger protein 780B	0.0	0.0	
chr20	17936852	17936971	reg1016859.p1	3.843	+	BC054871 NM_001014977 NM_178477 BC062735	-256313	+	NM_001159495	-262592	+	TSC_hg19_v1_chr20_-_17662888 AB037819 BC009700 NM_001042576 NM_004587	-274028	-	BT007191 AB464237 TSC_hg19_v1_chr20_-_17949155 AK223308 AK001793 AK129505 NM_014426 BC093623 BC093980 BC143274	12303	-	TSC_hg19_v1_chr20_-_17949438 BC002724 BC062638 BC064555 BC073171 AK123903 AK308017 AK296947 BC000100 AF121855 NM_152227	12529	-	TSC_hg19_v1_chr20_+_17949742 AF306686 AK315532 AF306684 AF306685 AK027503 BC016869 NM_052865	12751	+	BC054871|BANF2|140836|barrier to autointegration factor 2##NM_001014977|BANF2|140836|barrier to autointegration factor 2##NM_178477|BANF2|140836|barrier to autointegration factor 2##BC062735|BANF2|140836|barrier to autointegration factor 2##NM_001159495|BANF2|140836|barrier to autointegration factor 2##AB037819|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BC009700|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_001042576|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##NM_004587|RRBP1|6238|ribosome binding protein 1 homolog 180kDa (dog)##BT007191|SNX5|27131|sorting nexin 5##AK223308|SNX5|27131|sorting nexin 5##AK001793|SNX5|27131|sorting nexin 5##AK129505|SNX5|27131|sorting nexin 5##NM_014426|SNX5|27131|sorting nexin 5##BC093623|SNX5|27131|sorting nexin 5##BC093980|SNX5|27131|sorting nexin 5##BC143274|SNX5|27131|sorting nexin 5##BC002724|SNX5|27131|sorting nexin 5##BC062638|SNX5|27131|sorting nexin 5##AK123903|SNX5|27131|sorting nexin 5##AK308017|SNX5|27131|sorting nexin 5##AK296947|SNX5|27131|sorting nexin 5##BC000100|SNX5|27131|sorting nexin 5##AF121855|SNX5|27131|sorting nexin 5##NM_152227|SNX5|27131|sorting nexin 5##AF306686|C20orf72|92667|chromosome 20 open reading frame 72##AK315532|C20orf72|92667|chromosome 20 open reading frame 72##AF306684|C20orf72|92667|chromosome 20 open reading frame 72##AF306685|C20orf72|92667|chromosome 20 open reading frame 72##AK027503|C20orf72|92667|chromosome 20 open reading frame 72##BC016869|C20orf72|92667|chromosome 20 open reading frame 72##NM_052865|C20orf72|92667|chromosome 20 open reading frame 72	0.0	0.0	
chr2	136415726	136415821	reg1017871.p1	3.843	+	TSC_hg19_v1_chr2_+_136289050 BC001217 D21852 BC041093 NM_015361	-126713	+	AK095362 BC089429 NM_032143	-126987	-	NM_001172435 NM_012233 TSC_hg19_v1_chr2_+_135809861 AK022494 BC146809 BC071602 D31886 AB385272 AB449877 BC030992	-605857	+	TSC_hg19_v1_chr2_+_136499328 NM_014607 AK311058	83464	+	TSC_hg19_v1_chr2_+_136499437 BC035594 EF199840 BX647662 AK304096 D87684 BC020806	83624	+	TSC_hg19_v1_chr2_+_136499492 AK292829 AB527369 AM392761 AM393478 CU690126 DQ891123 DQ894302	83720	+	BC001217|R3HDM1|23518|R3H domain containing 1##D21852|R3HDM1|23518|R3H domain containing 1##BC041093|R3HDM1|23518|R3H domain containing 1##NM_015361|R3HDM1|23518|R3H domain containing 1##AK095362|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC089429|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_032143|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_001172435|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##NM_012233|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK022494|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC146809|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC071602|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##D31886|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AB449877|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC030992|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##NM_014607|UBXN4|23190|UBX domain protein 4##AK311058|UBXN4|23190|UBX domain protein 4##BC035594|UBXN4|23190|UBX domain protein 4##EF199840|UBXN4|23190|UBX domain protein 4##BX647662|UBXN4|23190|UBX domain protein 4##AK304096|UBXN4|23190|UBX domain protein 4##D87684|UBXN4|23190|UBX domain protein 4##BC020806|UBXN4|23190|UBX domain protein 4##AK292829|UBXN4|23190|UBX domain protein 4##AM392761|UBXN4|23190|UBX domain protein 4##AM393478|UBXN4|23190|UBX domain protein 4##DQ891123|UBXN4|23190|UBX domain protein 4##DQ894302|UBXN4|23190|UBX domain protein 4	0.961007	0.0	denovo_WM_7:-28:0.600
chr3	37329514	37329597	reg1016902.p2	3.843	+	TSC_hg19_v1_chr3_+_37284761 BC045543 NM_001172713 NM_002078 BC050444 AK290550 BC023648 AK300192 AK307429 AB209693 U41740 X82834	-44792	+	TSC_hg19_v1_chr3_-_37217813 BC017703 BC053668 AK291514 NM_001134369 NM_006309 NM_017724	-111768	-	BX648844 NM_001167617 NM_001167618 NM_001167619 AK295359 AK298583 AK316074 AK298324 AK311365 AK302807	-294253	+	NM_178339 NM_178342 AJ493604 AJ493603	111459	+	TSC_hg19_v1_chr3_+_37493631 BC030198 D25303 NM_002207 L24158	164199	+	TSC_hg19_v1_chr3_+_37903656 AJ575644 AJ575645 NM_001008392 NM_005808 AY279532 AY364238	574111	+	BC045543|GOLGA4|2803|golgin A4##NM_001172713|GOLGA4|2803|golgin A4##NM_002078|GOLGA4|2803|golgin A4##BC050444|GOLGA4|2803|golgin A4##AK290550|GOLGA4|2803|golgin A4##BC023648|GOLGA4|2803|golgin A4##AK300192|GOLGA4|2803|golgin A4##AK307429|GOLGA4|2803|golgin A4##AB209693|GOLGA4|2803|golgin A4##U41740|GOLGA4|2803|golgin A4##X82834|GOLGA4|2803|golgin A4##BC053668|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##AK291514|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_001134369|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_006309|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##NM_017724|LRRFIP2|9209|leucine rich repeat (in FLII) interacting protein 2##BX648844|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167617|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167618|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_001167619|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK295359|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298583|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK316074|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK298324|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK311365|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##AK302807|MLH1|4292|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)##NM_178339|C3orf35|339883|chromosome 3 open reading frame 35##NM_178342|C3orf35|339883|chromosome 3 open reading frame 35##AJ493604|C3orf35|339883|chromosome 3 open reading frame 35##AJ493603|C3orf35|339883|chromosome 3 open reading frame 35##BC030198|ITGA9|3680|integrin, alpha 9##D25303|ITGA9|3680|integrin, alpha 9##NM_002207|ITGA9|3680|integrin, alpha 9##L24158|ITGA9|3680|integrin, alpha 9##AJ575644|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##AJ575645|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##NM_001008392|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##NM_005808|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##AY279532|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like##AY364238|CTDSPL|10217|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	0.99498	0.0	
chr5	400249	400322	reg1013024.p2	3.843	+	AB033060 BC151852 BC152406 EU293605 NM_001242412 NM_020731	-95995	+	AK308872 TSC_hg19_v1_chr5_+_271775 BC106706 U58773 DQ891163 DQ894344 BT020072	-128480	+	TSC_hg19_v1_chr5_+_271772 BC012384 BC050597 BC110291 AK001917	-128517	+	TSC_hg19_v1_chr5_-_443213 BC014011 BC029796 NM_138464	42945	-	TSC_hg19_v1_chr5_+_443320 AK074086 GU727644 NM_007277 BC064569	43065	+	BC045808 TSC_hg19_v1_chr5_-_473152 BC086861 BC072677 BC064928 AF370427 AK023178	72827	-	AB033060|AHRR|57491|aryl-hydrocarbon receptor repressor##BC151852|AHRR|57491|aryl-hydrocarbon receptor repressor##BC152406|AHRR|57491|aryl-hydrocarbon receptor repressor##EU293605|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_001242412|AHRR|57491|aryl-hydrocarbon receptor repressor##NM_020731|AHRR|57491|aryl-hydrocarbon receptor repressor##AK308872|PDCD6|10016|programmed cell death 6##BC106706|PDCD6|10016|programmed cell death 6##U58773|PDCD6|10016|programmed cell death 6##DQ891163|PDCD6|10016|programmed cell death 6##DQ894344|PDCD6|10016|programmed cell death 6##BT020072|PDCD6|10016|programmed cell death 6##BC012384|PDCD6|10016|programmed cell death 6##BC050597|PDCD6|10016|programmed cell death 6##BC110291|PDCD6|10016|programmed cell death 6##AK001917|PDCD6|10016|programmed cell death 6##BC014011|C5orf55|116349|chromosome 5 open reading frame 55##BC029796|C5orf55|116349|chromosome 5 open reading frame 55##NM_138464|C5orf55|116349|chromosome 5 open reading frame 55##AK074086|EXOC3|11336|exocyst complex component 3##GU727644|EXOC3|11336|exocyst complex component 3##NM_007277|EXOC3|11336|exocyst complex component 3##BC064569|EXOC3|11336|exocyst complex component 3##BC045808|PP7080|25845|uncharacterized LOC25845##BC086861|PP7080|25845|uncharacterized LOC25845##BC072677|PP7080|25845|uncharacterized LOC25845##AF370427|PP7080|25845|uncharacterized LOC25845	0.0	0.0	
chr6	27661346	27661526	reg1014799.p2	3.843	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-220735	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-304881	+	AF352327 AF336874 BC107050 NM_032030	-368878	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	114287	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	114505	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	116346	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.045895	0.0	
chr7	135978132	135978239	reg1013083.p2	3.843	+	BC013989 TSC_hg19_v1_chr7_-_135662202 NM_001128619 NM_145808	-315983	-	TSC_hg19_v1_chr7_-_135662107 AF106075 AL834231 BC028093 AK309816 AK056225	-316095	-	AB489167 AM393216 AM393266 TSC_hg19_v1_chr7_-_135661945	-316289	-	AY034603 AY219704 NM_001006627 NM_001006630 AK290236 AL832585	575221	+	AK125233 AY034604 AY456125 AY456126 AY456127 NM_000739 NM_001006631 NM_001006632 AY219705 NM_001006626 AY219703 NM_001006629 AY034605 NM_001006628 TSC_hg19_v1_chr7_+_136554002	575732	+	TSC_hg19_v1_chr7_-_137028305 D90226	1050118	-	NM_001128619|LUZP6|767558|leucine zipper protein 6##NM_145808|MTPN|136319|myotrophin##AF106075|MTPN|136319|myotrophin##AL834231|MTPN|136319|myotrophin##BC028093|MTPN|136319|myotrophin##AK309816|MTPN|136319|myotrophin##AK056225|MTPN|136319|myotrophin##AM393216|MTPN|136319|myotrophin##AM393266|MTPN|136319|myotrophin##AY034603|CHRM2|1129|cholinergic receptor, muscarinic 2##AY219704|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006627|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006630|CHRM2|1129|cholinergic receptor, muscarinic 2##AK290236|CHRM2|1129|cholinergic receptor, muscarinic 2##AL832585|CHRM2|1129|cholinergic receptor, muscarinic 2##AK125233|CHRM2|1129|cholinergic receptor, muscarinic 2##AY034604|CHRM2|1129|cholinergic receptor, muscarinic 2##AY456125|CHRM2|1129|cholinergic receptor, muscarinic 2##AY456126|CHRM2|1129|cholinergic receptor, muscarinic 2##AY456127|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_000739|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006631|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006632|CHRM2|1129|cholinergic receptor, muscarinic 2##AY219705|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006626|CHRM2|1129|cholinergic receptor, muscarinic 2##AY219703|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006629|CHRM2|1129|cholinergic receptor, muscarinic 2##AY034605|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006628|CHRM2|1129|cholinergic receptor, muscarinic 2##D90226|PTN|5764|pleiotrophin	0.994042	0.0	denovo_WM_7:-16:0.712	denovo_WM_7:-18:0.227
chr8	41589027	41589113	reg1011403.p1	3.843	+	AK223578 AK129864 BC007930 BC030957 BC014467 NM_001142445 NM_020478 NM_020480	-66307	-	AB587362 AK057898 NM_152568	-84195	-	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	-153376	+	M28880 NM_000037 NM_020475 NM_020476 NM_020477 X16609 TSC_hg19_v1_chr8_-_41655141	66070	-	AK026601 TSC_hg19_v1_chr8_+_41685847	96755	+	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	165240	-	AK223578|ANK1|286|ankyrin 1, erythrocytic##AK129864|ANK1|286|ankyrin 1, erythrocytic##BC007930|ANK1|286|ankyrin 1, erythrocytic##BC030957|ANK1|286|ankyrin 1, erythrocytic##BC014467|ANK1|286|ankyrin 1, erythrocytic##NM_001142445|ANK1|286|ankyrin 1, erythrocytic##NM_020478|ANK1|286|ankyrin 1, erythrocytic##NM_020480|ANK1|286|ankyrin 1, erythrocytic##AK057898|NKX6-3|157848|NK6 homeobox 3##NM_152568|NKX6-3|157848|NK6 homeobox 3##NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##M28880|ANK1|286|ankyrin 1, erythrocytic##NM_000037|ANK1|286|ankyrin 1, erythrocytic##NM_020475|ANK1|286|ankyrin 1, erythrocytic##NM_020476|ANK1|286|ankyrin 1, erythrocytic##NM_020477|ANK1|286|ankyrin 1, erythrocytic##X16609|ANK1|286|ankyrin 1, erythrocytic##AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic	0.995651	0.0	denovo_WM_7:31:0.239	denovo_WM_7:33:0.258	denovo_WM_7:34:0.320
chr1	11986985	11987051	reg1016084.p1	3.842	+	TSC_hg19_v1_chr1_-_11986485 BC035033 AB095933 NM_138346	-545	-	CR541976 CR542003 BC025785 M25296 NM_002521	-68078	-	AB528342 DQ893115 DQ896389 EU176780 M30262 TSC_hg19_v1_chr1_-_11907841 BC005893 NM_006172	-79227	-	TSC_hg19_v1_chr1_+_11994717 NM_000302	7704	+	TSC_hg19_v1_chr1_+_11994779 AK295254 AK294688 AK316285 AK312243 AK299150 M98252 BC016657 AB385110	7787	+	NM_001127660 NM_014874 AK289828 TSC_hg19_v1_chr1_+_12040394 AF036536 AK021947 D86987	53315	+	BC035033|KIAA2013|90231|KIAA2013##AB095933|KIAA2013|90231|KIAA2013##NM_138346|KIAA2013|90231|KIAA2013##CR541976|NPPB|4879|natriuretic peptide B##CR542003|NPPB|4879|natriuretic peptide B##BC025785|NPPB|4879|natriuretic peptide B##M25296|NPPB|4879|natriuretic peptide B##NM_002521|NPPB|4879|natriuretic peptide B##DQ893115|NPPA|4878|natriuretic peptide A##DQ896389|NPPA|4878|natriuretic peptide A##EU176780|NPPA|4878|natriuretic peptide A##M30262|NPPA|4878|natriuretic peptide A##BC005893|NPPA|4878|natriuretic peptide A##NM_006172|NPPA|4878|natriuretic peptide A##NM_000302|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK295254|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK294688|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK316285|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK312243|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK299150|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##M98252|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##BC016657|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##NM_001127660|MFN2|9927|mitofusin 2##NM_014874|MFN2|9927|mitofusin 2##AK289828|MFN2|9927|mitofusin 2##AF036536|MFN2|9927|mitofusin 2##AK021947|MFN2|9927|mitofusin 2##D86987|MFN2|9927|mitofusin 2	0.0	0.0	
chr13	45509045	45509133	reg1012245.p1	3.842	+	TSC_hg19_v1_chr13_-_45150604 AB082525 NM_001243799 NM_183422	-358439	-	AK091854 AX747223 TSC_hg19_v1_chr13_-_45150467 BC136475 BC136482	-358659	-	NM_001243798	-460653	-	TSC_hg19_v1_chr13_-_45563607 AB528019 AF159548 BC001436 AK314242 NM_012345	54506	-	TSC_hg19_v1_chr13_+_45563672 AK304669 BC017776 BC039586 NM_018559 AK292493 AF145122 BC032333 AB051491	54635	+	TSC_hg19_v1_chr13_+_45694638 NM_004128 AK291545	185525	+	AB082525|TSC22D1|8848|TSC22 domain family, member 1##NM_001243799|TSC22D1|8848|TSC22 domain family, member 1##NM_183422|TSC22D1|8848|TSC22 domain family, member 1##AK091854|TSC22D1|8848|TSC22 domain family, member 1##BC136475|TSC22D1|8848|TSC22 domain family, member 1##BC136482|TSC22D1|8848|TSC22 domain family, member 1##NM_001243798|TSC22D1|8848|TSC22 domain family, member 1##AF159548|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##BC001436|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##AK314242|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##NM_012345|NUFIP1|26747|nuclear fragile X mental retardation protein interacting protein 1##AK304669|KIAA1704|55425|KIAA1704##BC017776|KIAA1704|55425|KIAA1704##BC039586|KIAA1704|55425|KIAA1704##NM_018559|KIAA1704|55425|KIAA1704##AK292493|KIAA1704|55425|KIAA1704##AF145122|KIAA1704|55425|KIAA1704##BC032333|KIAA1704|55425|KIAA1704##AB051491|KIAA1704|55425|KIAA1704##NM_004128|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa##AK291545|GTF2F2|2963|general transcription factor IIF, polypeptide 2, 30kDa	0.994868	0.0	denovo_WM_7:7:0.737	denovo_WM_7:8:0.226
chr17	38378805	38378914	reg1011538.p1	3.842	+	TSC_hg19_v1_chr17_+_38375614 AK289779 AK311544 AL834239 NM_133264 BC025965 AK315836 AK055057 AK290301 BC065551 AF370396	-3245	+	NM_016339	-44618	+	TSC_hg19_v1_chr17_+_38296796 CU690706	-82063	+	AK313620 TSC_hg19_v1_chr17_+_38444130	65271	+	TSC_hg19_v1_chr17_+_38444134 NM_001254 U77949	65281	+	TSC_hg19_v1_chr17_+_38444176 BC025232 AF022109	65355	+	AK289779|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK311544|WIPF2|147179|WAS/WASL interacting protein family, member 2##AL834239|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_133264|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC025965|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK315836|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK055057|WIPF2|147179|WAS/WASL interacting protein family, member 2##AK290301|WIPF2|147179|WAS/WASL interacting protein family, member 2##BC065551|WIPF2|147179|WAS/WASL interacting protein family, member 2##AF370396|WIPF2|147179|WAS/WASL interacting protein family, member 2##NM_016339|RAPGEFL1|51195|Rap guanine nucleotide exchange factor (GEF)-like 1##AK313620|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##NM_001254|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##U77949|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##BC025232|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)##AF022109|CDC6|990|cell division cycle 6 homolog (S. cerevisiae)	1.99065	0.0	denovo_WM_7:55:0.397	denovo_WM_7:56:0.298	denovo_WM_7:72:0.299	denovo_WM_7:73:0.398
chr2	61670954	61671098	reg1014173.p2	3.842	+	TSC_hg19_v1_chr2_+_61404793 AL833813	-266237	+	TSC_hg19_v1_chr2_+_61404649 BC063789	-266384	+	TSC_hg19_v1_chr2_+_61404606 BC030998 NM_152392 BC050395	-266443	+	TSC_hg19_v1_chr2_-_61697846 NM_014709	26831	-	TSC_hg19_v1_chr2_-_61697899 AB011142 BC141839	26917	-	TSC_hg19_v1_chr2_-_61764664 Y08614 AK312426	93732	-	AL833813|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC063789|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC030998|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_152392|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##BC050395|AHSA2|130872|AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast)##NM_014709|USP34|9736|ubiquitin specific peptidase 34##AB011142|USP34|9736|ubiquitin specific peptidase 34##BC141839|USP34|9736|ubiquitin specific peptidase 34##Y08614|XPO1|7514|exportin 1 (CRM1 homolog, yeast)##AK312426|XPO1|7514|exportin 1 (CRM1 homolog, yeast)	0.0	0.0	
chr5	122774609	122774734	reg1014738.p1	3.842	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-15527	-	NM_001136239 AK297992 AF272898 AF272899	-349827	+	TSC_hg19_v1_chr5_-_122372418 AK304053 NM_000943	-402247	-	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	73211	+	BC131507 AB033107 BC151226 NM_020747	1306117	-	NM_001146319 AK316288 AK300154	2921143	+	BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##AK304053|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_000943|PPIC|5480|peptidylprolyl isomerase C (cyclophilin C)##NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3	1.001295	0.0	denovo_WM_7:-6:0.772
chr6	129952552	129952649	reg1014446.p2	3.842	+	NM_000426 NM_001079823 Z26653	-748287	+	TSC_hg19_v1_chr6_-_128841726 Z70660 L77886 AF533875 BC140775 BC144512 BC144513 BC063596 AK295028 CR749277 NM_002844 NM_001135648	-1110944	-	AK124031 NM_001164687	-1712842	-	BC062417 AB527432 BC017223 BC039611 TSC_hg19_v1_chr6_-_130031308 AL834511 BC073143 BC107416 BC101708 BC111940 BC143531 AK098594 AY643712 NM_033515	78726	-	NM_001010876	229815	-	TSC_hg19_v1_chr6_+_130339729 AK094137 NM_001007102 NM_032438 BC060845 AK290219	387125	+	NM_000426|LAMA2|3908|laminin, alpha 2##NM_001079823|LAMA2|3908|laminin, alpha 2##Z26653|LAMA2|3908|laminin, alpha 2##Z70660|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##L77886|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AF533875|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC140775|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144512|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC144513|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##BC063596|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK295028|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##CR749277|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_002844|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##NM_001135648|PTPRK|5796|protein tyrosine phosphatase, receptor type, K##AK124031|THEMIS|387357|thymocyte selection associated##NM_001164687|THEMIS|387357|thymocyte selection associated##BC062417|ARHGAP18|93663|Rho GTPase activating protein 18##BC017223|ARHGAP18|93663|Rho GTPase activating protein 18##BC039611|ARHGAP18|93663|Rho GTPase activating protein 18##AL834511|ARHGAP18|93663|Rho GTPase activating protein 18##BC073143|ARHGAP18|93663|Rho GTPase activating protein 18##BC107416|ARHGAP18|93663|Rho GTPase activating protein 18##BC101708|ARHGAP18|93663|Rho GTPase activating protein 18##BC111940|ARHGAP18|93663|Rho GTPase activating protein 18##BC143531|ARHGAP18|93663|Rho GTPase activating protein 18##AK098594|ARHGAP18|93663|Rho GTPase activating protein 18##AY643712|ARHGAP18|93663|Rho GTPase activating protein 18##NM_033515|ARHGAP18|93663|Rho GTPase activating protein 18##NM_001010876|C6orf191|253582|chromosome 6 open reading frame 191##AK094137|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_001007102|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##NM_032438|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##BC060845|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)##AK290219|L3MBTL3|84456|l(3)mbt-like 3 (Drosophila)	0.0	0.0	
chr7	6280449	6280625	reg1010545.p1	3.842	+	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-135939	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-135994	+	TSC_hg19_v1_chr7_-_6098822 NM_001134335 NM_014413	-181690	-	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	31694	-	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	107973	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	133690	+	AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##NM_001134335|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##NM_014413|EIF2AK1|27102|eukaryotic translation initiation factor 2-alpha kinase 1##DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)	1.95903	0.0	denovo_WM_7:53:0.779	denovo_WM_7:-81:0.446	denovo_WM_7:-82:0.511
chrX	104099091	104099254	reg1008145.p2	3.842	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	-288180	+	AK290196 TSC_hg19_v1_chrX_+_103810879	-288293	+	BC042633 AY114148 BC053599 NM_153448 AK097704	-599586	-	BC108734 AF285597 BC042547 NM_031274	366181	-	TSC_hg19_v1_chrX_+_105066535 BX538345 NM_198465 BC108702	967366	+	TSC_hg19_v1_chrX_+_105066559 AK131549	967394	+	AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##BC108734|TEX13A|56157|testis expressed 13A##AF285597|TEX13A|56157|testis expressed 13A##BC042547|TEX13A|56157|testis expressed 13A##NM_031274|TEX13A|56157|testis expressed 13A##BX538345|NRK|203447|Nik related kinase##NM_198465|NRK|203447|Nik related kinase##BC108702|NRK|203447|Nik related kinase##AK131549|NRK|203447|Nik related kinase	0.0	0.0	
chr12	31740371	31740446	reg1014553.p2	3.841	+	BC000024 NM_001135811 NM_021238 TSC_hg19_v1_chr12_-_31479121 NM_001135812	-261269	-	TSC_hg19_v1_chr12_-_31479085 AF212220	-261307	-	BC071966 TSC_hg19_v1_chr12_-_31479052 BC004462 AK027736 AF087885 AK026932 AL157432	-261350	-	TSC_hg19_v1_chr12_-_31743924 BC068580 NM_144973	3510	-	AK290248 NM_001135864	59685	+	BC039535 NM_173802	71712	+	BC000024|FAM60A|58516|family with sequence similarity 60, member A##NM_001135811|FAM60A|58516|family with sequence similarity 60, member A##NM_021238|FAM60A|58516|family with sequence similarity 60, member A##NM_001135812|FAM60A|58516|family with sequence similarity 60, member A##AF212220|FAM60A|58516|family with sequence similarity 60, member A##BC071966|FAM60A|58516|family with sequence similarity 60, member A##BC004462|FAM60A|58516|family with sequence similarity 60, member A##AF087885|FAM60A|58516|family with sequence similarity 60, member A##AK026932|FAM60A|58516|family with sequence similarity 60, member A##AL157432|FAM60A|58516|family with sequence similarity 60, member A##BC068580|DENND5B|160518|DENN/MADD domain containing 5B##NM_144973|DENND5B|160518|DENN/MADD domain containing 5B##AK290248|METTL20|254013|methyltransferase like 20##NM_001135864|METTL20|254013|methyltransferase like 20##BC039535|METTL20|254013|methyltransferase like 20##NM_173802|METTL20|254013|methyltransferase like 20	1.994577	0.0	
chr18	43792510	43792673	reg1016006.p2	3.841	+	TSC_hg19_v1_chr18_+_43754065 AK289738	-38509	+	TSC_hg19_v1_chr18_+_43754007 BC084579	-38576	+	TSC_hg19_v1_chr18_+_43754002 NM_001008239 NM_145055 AK292981	-38597	+	TSC_hg19_v1_chr18_+_43913942 AK055997	121341	+	AK091537 AK122819 AK127467 AX747044 NM_152470	121595	+	AK057232 BC047720 NM_001145473 NM_001173129	306449	-	AK289738|C18orf25|147339|chromosome 18 open reading frame 25##BC084579|C18orf25|147339|chromosome 18 open reading frame 25##NM_001008239|C18orf25|147339|chromosome 18 open reading frame 25##NM_145055|C18orf25|147339|chromosome 18 open reading frame 25##AK292981|C18orf25|147339|chromosome 18 open reading frame 25##AK055997|RNF165|494470|ring finger protein 165##AK091537|RNF165-IT1|147341|RNF165 intronic transcript 1 (non-protein coding)##AK122819|RNF165|494470|ring finger protein 165##AK127467|RNF165|494470|ring finger protein 165##NM_152470|RNF165|494470|ring finger protein 165##AK057232|LOXHD1|125336|lipoxygenase homology domains 1##BC047720|LOXHD1|125336|lipoxygenase homology domains 1##NM_001145473|LOXHD1|125336|lipoxygenase homology domains 1##NM_001173129|LOXHD1|125336|lipoxygenase homology domains 1	0.0	0.0	
chr3	164903659	164903771	reg1015370.p1	3.841	+	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	-107437	-	NM_001080440	-3689120	+	AF458592 BC037817 NM_001040100	-3813907	-	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	10790	-	M16474 BC018141 BC008396 TSC_hg19_v1_chr3_-_165555212 AK292063 M16541	651478	-	NM_000055 TSC_hg19_v1_chr3_-_165555283	651552	-	BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001080440|OTOL1|131149|otolin 1##AF458592|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC037817|SPTSSB|165679|serine palmitoyltransferase, small subunit B##NM_001040100|SPTSSB|165679|serine palmitoyltransferase, small subunit B##BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3##M16474|BCHE|590|butyrylcholinesterase##BC018141|BCHE|590|butyrylcholinesterase##BC008396|BCHE|590|butyrylcholinesterase##AK292063|BCHE|590|butyrylcholinesterase##M16541|BCHE|590|butyrylcholinesterase##NM_000055|BCHE|590|butyrylcholinesterase	0.0	0.723166	CTCF.p2:-16:0.723
chr5	171433737	171433917	reg1017128.p1	3.841	+	AB033279 TSC_hg19_v1_chr5_-_171433643 AB033281 AB033280	-183	-	TSC_hg19_v1_chr5_-_171433553 AK314999 DQ891125 DQ894304 AF176022 AB014596	-299	-	BC006245 TSC_hg19_v1_chr5_+_170847089 AB007422 AB528345 AF211188 AM393798 BT019570 BT019571 DQ892736 DQ895983	-586696	+	BC026213 NM_012300 NM_033644 NM_033645	49	-	AB015718 TSC_hg19_v1_chr5_-_171615170	181311	-	AK307943 TSC_hg19_v1_chr5_-_171615203	181376	-	AB033279|FBXW11|23291|F-box and WD repeat domain containing 11##AB033281|FBXW11|23291|F-box and WD repeat domain containing 11##AB033280|FBXW11|23291|F-box and WD repeat domain containing 11##AK314999|FBXW11|23291|F-box and WD repeat domain containing 11##DQ891125|FBXW11|23291|F-box and WD repeat domain containing 11##DQ894304|FBXW11|23291|F-box and WD repeat domain containing 11##AF176022|FBXW11|23291|F-box and WD repeat domain containing 11##AB014596|FBXW11|23291|F-box and WD repeat domain containing 11##BC006245|FGF18|8817|fibroblast growth factor 18##AB007422|FGF18|8817|fibroblast growth factor 18##AF211188|FGF18|8817|fibroblast growth factor 18##AM393798|FGF18|8817|fibroblast growth factor 18##BT019570|FGF18|8817|fibroblast growth factor 18##BT019571|FGF18|8817|fibroblast growth factor 18##DQ892736|FGF18|8817|fibroblast growth factor 18##DQ895983|FGF18|8817|fibroblast growth factor 18##BC026213|FBXW11|23291|F-box and WD repeat domain containing 11##NM_012300|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033644|FBXW11|23291|F-box and WD repeat domain containing 11##NM_033645|FBXW11|23291|F-box and WD repeat domain containing 11##AB015718|STK10|6793|serine/threonine kinase 10##AK307943|STK10|6793|serine/threonine kinase 10	0.0	0.0	
chr1	160605090	160605189	reg1006241.p1	3.840	+	AK313496 TSC_hg19_v1_chr1_-_160549273 AF054815 AF054816 AF054817 AF054818 U96627 Y12632 NM_001184879 NM_001184881 NM_001184882 NM_003874	-55851	-	AB590277 CR541847 CU676492 DQ891708 DQ894872 BC020063 U82988 TSC_hg19_v1_chr1_-_160549268 AJ223324 AK296290 CR933666	-55892	-	AB590474 AJ306388 AJ277141 AK313549 BC113893 BC114495 AK310085 AL832854 BC090928 AK300013 AK301026 AY358159 TSC_hg19_v1_chr1_-_160493043 AK303990 AK125624 NM_001184714 NM_001184715 NM_001184716 NM_052931	-112110	-	AK314244 NM_003037 BC012602	11924	-	BT019813 CR457012 AB590257 CU688852 DQ896316 EU176422 M59904 M37766 BC016182 NM_001778 X06341 BC030224 AK225636 AK310624 AK310744	76447	-	AK298548 AK298499 AY358512 AL834424 AK301438 TSC_hg19_v1_chr1_+_160709067 AK290706 AK292097 AK292148 AK301137 AK301432 AF390894 AB027233 NM_021181 AF291815 AJ271869 AJ276429 BC027867 AB590100 AM392941 AM393275 EU832487 EU832567	103925	+	AK313496|CD84|8832|CD84 molecule##AF054815|CD84|8832|CD84 molecule##AF054816|CD84|8832|CD84 molecule##AF054817|CD84|8832|CD84 molecule##AF054818|CD84|8832|CD84 molecule##U96627|CD84|8832|CD84 molecule##Y12632|CD84|8832|CD84 molecule##NM_001184879|CD84|8832|CD84 molecule##NM_001184881|CD84|8832|CD84 molecule##NM_001184882|CD84|8832|CD84 molecule##NM_003874|CD84|8832|CD84 molecule##CR541847|CD84|8832|CD84 molecule##DQ891708|CD84|8832|CD84 molecule##DQ894872|CD84|8832|CD84 molecule##BC020063|CD84|8832|CD84 molecule##U82988|CD84|8832|CD84 molecule##AJ223324|CD84|8832|CD84 molecule##AK296290|CD84|8832|CD84 molecule##CR933666|CD84|8832|CD84 molecule##AJ306388|SLAMF6|114836|SLAM family member 6##AJ277141|SLAMF6|114836|SLAM family member 6##AK313549|SLAMF6|114836|SLAM family member 6##BC113893|SLAMF6|114836|SLAM family member 6##BC114495|SLAMF6|114836|SLAM family member 6##AK310085|SLAMF6|114836|SLAM family member 6##AL832854|SLAMF6|114836|SLAM family member 6##BC090928|SLAMF6|114836|SLAM family member 6##AK300013|SLAMF6|114836|SLAM family member 6##AK301026|SLAMF6|114836|SLAM family member 6##AY358159|SLAMF6|114836|SLAM family member 6##AK303990|SLAMF6|114836|SLAM family member 6##AK125624|SLAMF6|114836|SLAM family member 6##NM_001184714|SLAMF6|114836|SLAM family member 6##NM_001184715|SLAMF6|114836|SLAM family member 6##NM_001184716|SLAMF6|114836|SLAM family member 6##NM_052931|SLAMF6|114836|SLAM family member 6##AK314244|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##NM_003037|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BC012602|SLAMF1|6504|signaling lymphocytic activation molecule family member 1##BT019813|CD48|962|CD48 molecule##CR457012|CD48|962|CD48 molecule##DQ896316|CD48|962|CD48 molecule##EU176422|CD48|962|CD48 molecule##M59904|CD48|962|CD48 molecule##M37766|CD48|962|CD48 molecule##BC016182|CD48|962|CD48 molecule##NM_001778|CD48|962|CD48 molecule##X06341|CD48|962|CD48 molecule##BC030224|CD48|962|CD48 molecule##AK225636|CD48|962|CD48 molecule##AK310624|CD48|962|CD48 molecule##AK310744|CD48|962|CD48 molecule##AK298548|SLAMF7|57823|SLAM family member 7##AK298499|SLAMF7|57823|SLAM family member 7##AY358512|SLAMF7|57823|SLAM family member 7##AL834424|SLAMF7|57823|SLAM family member 7##AK301438|SLAMF7|57823|SLAM family member 7##AK290706|SLAMF7|57823|SLAM family member 7##AK292097|SLAMF7|57823|SLAM family member 7##AK292148|SLAMF7|57823|SLAM family member 7##AK301137|SLAMF7|57823|SLAM family member 7##AK301432|SLAMF7|57823|SLAM family member 7##AF390894|SLAMF7|57823|SLAM family member 7##AB027233|SLAMF7|57823|SLAM family member 7##NM_021181|SLAMF7|57823|SLAM family member 7##AF291815|SLAMF7|57823|SLAM family member 7##AJ271869|SLAMF7|57823|SLAM family member 7##AJ276429|SLAMF7|57823|SLAM family member 7##BC027867|SLAMF7|57823|SLAM family member 7##AM392941|SLAMF7|57823|SLAM family member 7##AM393275|SLAMF7|57823|SLAM family member 7##EU832487|SLAMF7|57823|SLAM family member 7##EU832567|SLAMF7|57823|SLAM family member 7	0.0	0.0	
chr14	74237458	74237579	reg1010867.p1	3.840	+	TSC_hg19_v1_chr14_-_74227002 AK127785 NM_194278	-10553	-	BC015668 TSC_hg19_v1_chr14_-_74226640	-10880	-	CR457112 BC039577 AK290980 TSC_hg19_v1_chr14_-_74181085 AF320308 BC007712 NM_006029	-56757	-	TSC_hg19_v1_chr14_-_74253912 NM_001043318 BC009202	16401	-	TSC_hg19_v1_chr14_+_74318554 NM_001146154 NM_001146155 AY346133 AY424308 AK311280 NM_152444 BX641118 BC059364 AK309188 AK096410 BC034973	81071	+	NM_001242924 NM_001242926 NM_001242927 NM_001242928 NM_021188 AK299138	115800	+	AK127785|C14orf43|91748|chromosome 14 open reading frame 43##NM_194278|C14orf43|91748|chromosome 14 open reading frame 43##BC015668|C14orf43|91748|chromosome 14 open reading frame 43##CR457112|PNMA1|9240|paraneoplastic antigen MA1##BC039577|PNMA1|9240|paraneoplastic antigen MA1##AK290980|PNMA1|9240|paraneoplastic antigen MA1##AF320308|PNMA1|9240|paraneoplastic antigen MA1##BC007712|PNMA1|9240|paraneoplastic antigen MA1##NM_006029|PNMA1|9240|paraneoplastic antigen MA1##NM_001043318|C14orf43|91748|chromosome 14 open reading frame 43##BC009202|C14orf43|91748|chromosome 14 open reading frame 43##NM_001146154|PTGR2|145482|prostaglandin reductase 2##NM_001146155|PTGR2|145482|prostaglandin reductase 2##AY346133|PTGR2|145482|prostaglandin reductase 2##AY424308|PTGR2|145482|prostaglandin reductase 2##AK311280|PTGR2|145482|prostaglandin reductase 2##NM_152444|PTGR2|145482|prostaglandin reductase 2##BX641118|PTGR2|145482|prostaglandin reductase 2##BC059364|PTGR2|145482|prostaglandin reductase 2##AK309188|PTGR2|145482|prostaglandin reductase 2##AK096410|PTGR2|145482|prostaglandin reductase 2##NM_001242924|ZNF410|57862|zinc finger protein 410##NM_001242926|ZNF410|57862|zinc finger protein 410##NM_001242927|ZNF410|57862|zinc finger protein 410##NM_001242928|ZNF410|57862|zinc finger protein 410##NM_021188|ZNF410|57862|zinc finger protein 410##AK299138|ZNF410|57862|zinc finger protein 410	0.0	0.0	
chr15	67712601	67712743	reg1012630.p1	3.840	+	TSC_hg19_v1_chr15_+_67547171 BC039463 NM_001031715 NM_022784 AY014282 AK292478 AK304303 BC031041 BC048964 BC039292 AK022538 CU690588	-165498	+	AB528136 AM393020 AM393411 CR533540 CU691322 TSC_hg19_v1_chr15_-_67547000 AK021568 AL136715 BC058886 BC047026 BC035852 NM_024666	-165652	-	NM_001145104 AK300614 AK301348	-254176	+	TSC_hg19_v1_chr15_+_67813533 NM_001143936 AK294012 AY726587	100875	+	TSC_hg19_v1_chr15_-_67814131 BC047537	101484	-	TSC_hg19_v1_chr15_+_67835014 NM_002757 NM_145160	122350	+	BC039463|IQCH|64799|IQ motif containing H##NM_001031715|IQCH|64799|IQ motif containing H##NM_022784|IQCH|64799|IQ motif containing H##AY014282|IQCH|64799|IQ motif containing H##AK292478|IQCH|64799|IQ motif containing H##AK304303|IQCH|64799|IQ motif containing H##BC031041|IQCH|64799|IQ motif containing H##BC048964|IQCH|64799|IQ motif containing H##BC039292|IQCH|64799|IQ motif containing H##AK022538|IQCH|64799|IQ motif containing H##AM393020|AAGAB|79719|alpha- and gamma-adaptin binding protein##AM393411|AAGAB|79719|alpha- and gamma-adaptin binding protein##CR533540|AAGAB|79719|alpha- and gamma-adaptin binding protein##AK021568|AAGAB|79719|alpha- and gamma-adaptin binding protein##AL136715|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC058886|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC047026|AAGAB|79719|alpha- and gamma-adaptin binding protein##BC035852|AAGAB|79719|alpha- and gamma-adaptin binding protein##NM_024666|AAGAB|79719|alpha- and gamma-adaptin binding protein##NM_001145104|SMAD3|4088|SMAD family member 3##AK300614|SMAD3|4088|SMAD family member 3##AK301348|SMAD3|4088|SMAD family member 3##NM_001143936|C15orf61|145853|chromosome 15 open reading frame 61##AK294012|C15orf61|145853|chromosome 15 open reading frame 61##AY726587|C15orf61|145853|chromosome 15 open reading frame 61##BC047537|LOC100506686|100506686|uncharacterized LOC100506686##NM_002757|MAP2K5|5607|mitogen-activated protein kinase kinase 5##NM_145160|MAP2K5|5607|mitogen-activated protein kinase kinase 5	0.0	0.0	
chr15	99392841	99392952	reg1016032.p1	3.840	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	-200140	+	TSC_hg19_v1_chr15_+_99191767 AB425196	-200925	+	AK097062 AK097062 NM_182562	-335286	-	BC104743 BC104744 BC105686 NM_001102612	155941	-	AK058162 NM_001167902	158127	-	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	252344	+	NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein	0.071776	0.0	
chr21	38564581	38564761	reg1005716.p2	3.840	+	D83077 NM_003316	-109425	+	TSC_hg19_v1_chr21_+_38445570 AK297921 BC092466 NM_001001894 AK291992 AK299991	-119054	+	AB035742 AB037162 TSC_hg19_v1_chr21_-_38445400 NM_153682	-119248	-	BC029827 TSC_hg19_v1_chr21_+_38593064	28388	+	TSC_hg19_v1_chr21_-_38639617 AK316460 AK299662	74937	-	TSC_hg19_v1_chr21_-_38639642 AJ001867 AK300024 AK312707 D87343 NM_006052 AK303624	75157	-	D83077|TTC3|7267|tetratricopeptide repeat domain 3##NM_003316|TTC3|7267|tetratricopeptide repeat domain 3##AK297921|TTC3|7267|tetratricopeptide repeat domain 3##BC092466|TTC3|7267|tetratricopeptide repeat domain 3##NM_001001894|TTC3|7267|tetratricopeptide repeat domain 3##AK291992|TTC3|7267|tetratricopeptide repeat domain 3##AK299991|TTC3|7267|tetratricopeptide repeat domain 3##AB035742|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##AB037162|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##NM_153682|PIGP|51227|phosphatidylinositol glycan anchor biosynthesis, class P##BC029827|DSCR9|257203|Down syndrome critical region gene 9 (non-protein coding)##AK316460|DSCR3|10311|Down syndrome critical region gene 3##AK299662|DSCR3|10311|Down syndrome critical region gene 3##AJ001867|DSCR3|10311|Down syndrome critical region gene 3##AK300024|DSCR3|10311|Down syndrome critical region gene 3##AK312707|DSCR3|10311|Down syndrome critical region gene 3##D87343|DSCR3|10311|Down syndrome critical region gene 3##NM_006052|DSCR3|10311|Down syndrome critical region gene 3##AK303624|DSCR3|10311|Down syndrome critical region gene 3	0.0	0.0	
chr7	143898205	143898385	reg1002032.p2	3.840	+	BC136868 BC136878 EF560743 AK125680 NM_001003702	-5576	-	NM_198495 AK292236	-17743	+	BC136889 NM_001001659	-72118	+	NM_001001802 NM_001005287	31640	-	NM_001005328 BC136704 BC136711	58472	-	AK292236 NM_198495	68090	-	BC136868|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##BC136878|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##EF560743|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##AK125680|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##NM_001003702|ARHGEF35|445328|Rho guanine nucleotide exchange factor (GEF) 35##NM_198495|CTAGE4|100128553|CTAGE family, member 4##AK292236|CTAGE8|100142659|CTAGE family, member 8##BC136889|OR2A14|135941|olfactory receptor, family 2, subfamily A, member 14##NM_001001659|OR2A14|135941|olfactory receptor, family 2, subfamily A, member 14##NM_001001802|OR2A42|402317|olfactory receptor, family 2, subfamily A, member 42##NM_001005287|OR2A1|346528|olfactory receptor, family 2, subfamily A, member 1##NM_001005328|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##BC136704|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##BC136711|OR2A7|401427|olfactory receptor, family 2, subfamily A, member 7##AK292236|CTAGE8|100142659|CTAGE family, member 8##NM_198495|CTAGE4|100128553|CTAGE family, member 4	0.0	0.0	
chr7	34780529	34780709	reg1017546.p2	3.840	+	TSC_hg19_v1_chr7_+_34697827 AK172847 AY310326 AY310327 AY310328 AY310329 AY310330 AY310331 AY310332 NM_207172 NM_207173 BC132693 BC132695 BC144380 AY956446 AY956447 AY956448 HQ258213	-82700	+	AK289963 NM_133468 AK096150 BC060868	-835477	+	TSC_hg19_v1_chr7_+_33169175 NM_001033604 NM_001033605 NM_014451 NM_198428 BC003117 AK057660 BX647385 AK314627	-1611538	+	DQ287932 NM_015283	297033	-	CU688238 TSC_hg19_v1_chr7_-_35225788 BC066987 AK304236	445173	-	TSC_hg19_v1_chr7_-_35293701 NM_001077653 NM_001166220 DQ986374	513111	-	AK172847|NPSR1|387129|neuropeptide S receptor 1##AY310326|NPSR1|387129|neuropeptide S receptor 1##AY310327|NPSR1|387129|neuropeptide S receptor 1##AY310328|NPSR1|387129|neuropeptide S receptor 1##AY310329|NPSR1|387129|neuropeptide S receptor 1##AY310330|NPSR1|387129|neuropeptide S receptor 1##AY310331|NPSR1|387129|neuropeptide S receptor 1##AY310332|NPSR1|387129|neuropeptide S receptor 1##NM_207172|NPSR1|387129|neuropeptide S receptor 1##NM_207173|NPSR1|387129|neuropeptide S receptor 1##BC132693|NPSR1|387129|neuropeptide S receptor 1##BC132695|NPSR1|387129|neuropeptide S receptor 1##BC144380|NPSR1|387129|neuropeptide S receptor 1##AY956446|NPSR1|387129|neuropeptide S receptor 1##AY956447|NPSR1|387129|neuropeptide S receptor 1##AY956448|NPSR1|387129|neuropeptide S receptor 1##HQ258213|NPSR1|387129|neuropeptide S receptor 1##AK289963|BMPER|168667|BMP binding endothelial regulator##NM_133468|BMPER|168667|BMP binding endothelial regulator##BC060868|BMPER|168667|BMP binding endothelial regulator##NM_001033604|BBS9|27241|Bardet-Biedl syndrome 9##NM_001033605|BBS9|27241|Bardet-Biedl syndrome 9##NM_014451|BBS9|27241|Bardet-Biedl syndrome 9##NM_198428|BBS9|27241|Bardet-Biedl syndrome 9##AK057660|BBS9|27241|Bardet-Biedl syndrome 9##BX647385|BBS9|27241|Bardet-Biedl syndrome 9##AK314627|BBS9|27241|Bardet-Biedl syndrome 9##DQ287932|DPY19L1|23333|dpy-19-like 1 (C. elegans)##NM_015283|DPY19L1|23333|dpy-19-like 1 (C. elegans)##BC066987|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##AK304236|DPY19L2P1|554236|dpy-19-like 2 pseudogene 1 (C. elegans)##NM_001077653|TBX20|57057|T-box 20##NM_001166220|TBX20|57057|T-box 20##DQ986374|TBX20|57057|T-box 20	0.075643	0.0	
chr8	99083715	99083895	reg1001153.p3	3.840	+	AK096872 NM_001170806 NM_173549 BC062359	-7028	+	BC095426 TSC_hg19_v1_chr8_-_99057774 AK312102 D28438 AK308890 NM_000989	-26009	-	L05095 TSC_hg19_v1_chr8_-_99057755	-26052	-	CR456844 CR541652 DQ892797 DQ896044 TSC_hg19_v1_chr8_-_99129361	45538	-	BC010280 TSC_hg19_v1_chr8_-_99129395 BC093059 BC012592 NM_005836 X95384	45596	-	TSC_hg19_v1_chr8_+_99129543 NM_001145860 NM_001145861 X99302 AK291434	45733	+	AK096872|C8orf47|203111|chromosome 8 open reading frame 47##NM_001170806|C8orf47|203111|chromosome 8 open reading frame 47##NM_173549|C8orf47|203111|chromosome 8 open reading frame 47##BC062359|C8orf47|203111|chromosome 8 open reading frame 47##BC095426|RPL30|6156|ribosomal protein L30##AK312102|RPL30|6156|ribosomal protein L30##D28438|RPL30|6156|ribosomal protein L30##AK308890|RPL30|6156|ribosomal protein L30##NM_000989|RPL30|6156|ribosomal protein L30##L05095|RPL30|6156|ribosomal protein L30##CR456844|HRSP12|10247|heat-responsive protein 12##CR541652|HRSP12|10247|heat-responsive protein 12##DQ892797|HRSP12|10247|heat-responsive protein 12##DQ896044|HRSP12|10247|heat-responsive protein 12##BC010280|HRSP12|10247|heat-responsive protein 12##BC093059|HRSP12|10247|heat-responsive protein 12##BC012592|HRSP12|10247|heat-responsive protein 12##NM_005836|HRSP12|10247|heat-responsive protein 12##X95384|HRSP12|10247|heat-responsive protein 12##NM_001145860|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145861|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##X99302|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##AK291434|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	0.997299	0.0	denovo_WM_7:-88:0.364	denovo_WM_7:-89:0.364
chr9	140420276	140420357	reg1014560.p2	3.840	+	AY255128 AY255129 AY255130 AY255131 AY255132 NM_001130969 NM_001130970 NM_001130971 NM_001178064 NM_015537 TSC_hg19_v1_chr9_-_140353787	-66514	-	TSC_hg19_v1_chr9_-_140353758 AK074602 BC072412	-66556	-	TSC_hg19_v1_chr9_-_140353612 BC110498	-66684	-	AK125060 AK126267 TSC_hg19_v1_chr9_-_140444881 NM_001098537 NM_152286	24594	-	NM_032477 TSC_hg19_v1_chr9_+_140446353 BC040035 AY232291	26043	+	CU675946 TSC_hg19_v1_chr9_-_140473350 AK307180 BC003123 BC016349 BC017335	52974	-	AY255128|NELF|26012|nasal embryonic LHRH factor##AY255129|NELF|26012|nasal embryonic LHRH factor##AY255130|NELF|26012|nasal embryonic LHRH factor##AY255131|NELF|26012|nasal embryonic LHRH factor##AY255132|NELF|26012|nasal embryonic LHRH factor##NM_001130969|NELF|26012|nasal embryonic LHRH factor##NM_001130970|NELF|26012|nasal embryonic LHRH factor##NM_001130971|NELF|26012|nasal embryonic LHRH factor##NM_001178064|NELF|26012|nasal embryonic LHRH factor##NM_015537|NELF|26012|nasal embryonic LHRH factor##AK074602|NELF|26012|nasal embryonic LHRH factor##BC072412|NELF|26012|nasal embryonic LHRH factor##BC110498|NELF|26012|nasal embryonic LHRH factor##AK125060|PNPLA7|375775|patatin-like phospholipase domain containing 7##AK126267|PNPLA7|375775|patatin-like phospholipase domain containing 7##NM_001098537|PNPLA7|375775|patatin-like phospholipase domain containing 7##NM_152286|PNPLA7|375775|patatin-like phospholipase domain containing 7##NM_032477|MRPL41|64975|mitochondrial ribosomal protein L41##BC040035|MRPL41|64975|mitochondrial ribosomal protein L41##AY232291|MRPL41|64975|mitochondrial ribosomal protein L41##AK307180|WDR85|92715|WD repeat domain 85##BC003123|WDR85|92715|WD repeat domain 85##BC016349|WDR85|92715|WD repeat domain 85##BC017335|WDR85|92715|WD repeat domain 85	0.0	0.309788	CTCF.p2:27:0.310
chrX	139048425	139048553	reg1009746.p1	3.840	+	BC137148 BC137149 NM_001013403	-813	-	BC132728 BC132730 AJ580093 AJ580094 NM_001010986 NM_173694	-134074	-	AK302957 AK316416 NM_001099855 NM_001171876	-258135	-	NM_005634 TSC_hg19_v1_chrX_-_139587235 AK313820 BC093863 BC093865	538763	-	TSC_hg19_v1_chrX_+_139791923 AK054978	743438	+	M16965 M16965 BC113472 BC113472 BC113474 BC113474 NM_004065	818163	-	BC137148|CXorf66|347487|chromosome X open reading frame 66##BC137149|CXorf66|347487|chromosome X open reading frame 66##NM_001013403|CXorf66|347487|chromosome X open reading frame 66##BC132728|ATP11C|286410|ATPase, class VI, type 11C##BC132730|ATP11C|286410|ATPase, class VI, type 11C##AJ580093|ATP11C|286410|ATPase, class VI, type 11C##AJ580094|ATP11C|286410|ATPase, class VI, type 11C##NM_001010986|ATP11C|286410|ATPase, class VI, type 11C##NM_173694|ATP11C|286410|ATPase, class VI, type 11C##AK302957|MCF2|4168|MCF.2 cell line derived transforming sequence##AK316416|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001099855|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_001171876|MCF2|4168|MCF.2 cell line derived transforming sequence##NM_005634|SOX3|6658|SRY (sex determining region Y)-box 3##BC093863|SOX3|6658|SRY (sex determining region Y)-box 3##BC093865|SOX3|6658|SRY (sex determining region Y)-box 3##AK054978|RP1-177G6.2|286411|uncharacterized LOC286411##M16965|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##M16965|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113472|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113472|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113474|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##BC113474|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa##NM_004065|CDR1|1038|cerebellar degeneration-related protein 1, 34kDa	1.989887	0.0	denovo_WM_7:44:0.983	denovo_WM_7:61:0.875
chr1	224556443	224556623	reg1001386.p2	3.839	+	BC000573 TSC_hg19_v1_chr1_+_224544609 AK222634 BX649076 AM392966 AM393151 AM393502 DQ891901 DQ895087	-11922	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	-11941	+	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	-11964	+	AK307909 TSC_hg19_v1_chr1_-_224621786 BC034498 AB385130	65227	-	AB209887 NM_001115113 NM_025160	65467	-	TSC_hg19_v1_chr1_+_224804182 AK096312 NM_152495	247646	+	BC000573|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK222634|CNIH4|29097|cornichon homolog 4 (Drosophila)##BX649076|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM392966|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393151|CNIH4|29097|cornichon homolog 4 (Drosophila)##AM393502|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ891901|CNIH4|29097|cornichon homolog 4 (Drosophila)##DQ895087|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK307909|WDR26|80232|WD repeat domain 26##BC034498|WDR26|80232|WD repeat domain 26##AB209887|WDR26|80232|WD repeat domain 26##NM_001115113|WDR26|80232|WD repeat domain 26##NM_025160|WDR26|80232|WD repeat domain 26##AK096312|CNIH3|149111|cornichon homolog 3 (Drosophila)##NM_152495|CNIH3|149111|cornichon homolog 3 (Drosophila)	0.99805	0.0	denovo_WM_7:86:0.827
chr14	93181231	93181332	reg1014136.p1	3.839	+	AK026092 TSC_hg19_v1_chr14_+_93118844 AK074176	-62458	+	TSC_hg19_v1_chr14_+_93118584 AK090451 AB060338	-62645	+	TSC_hg19_v1_chr14_+_92980007 AK021762 NM_024832 BC032614 BC070062 BX248258 AB081753	-201322	+	Y09862 BC003061 AK225822 TSC_hg19_v1_chr14_-_93214973 BX161422 BX161380 BX161434 AK291534 AK291560 AK297074 AK297780 NM_001008530 NM_005606	33678	-	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	79405	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	208163	+	AK026092|RIN3|79890|Ras and Rab interactor 3##AK074176|RIN3|79890|Ras and Rab interactor 3##AK090451|RIN3|79890|Ras and Rab interactor 3##AB060338|RIN3|79890|Ras and Rab interactor 3##AK021762|RIN3|79890|Ras and Rab interactor 3##NM_024832|RIN3|79890|Ras and Rab interactor 3##BC032614|RIN3|79890|Ras and Rab interactor 3##BC070062|RIN3|79890|Ras and Rab interactor 3##BX248258|RIN3|79890|Ras and Rab interactor 3##AB081753|RIN3|79890|Ras and Rab interactor 3##Y09862|LGMN|5641|legumain##BC003061|LGMN|5641|legumain##AK225822|LGMN|5641|legumain##BX161422|LGMN|5641|legumain##BX161380|LGMN|5641|legumain##BX161434|LGMN|5641|legumain##AK291534|LGMN|5641|legumain##AK291560|LGMN|5641|legumain##AK297074|LGMN|5641|legumain##AK297780|LGMN|5641|legumain##NM_001008530|LGMN|5641|legumain##NM_005606|LGMN|5641|legumain##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)	0.996888	0.995728	CTCF.p2:-28:0.996
chr16	48586645	48586754	reg1012679.p1	3.839	+	TSC_hg19_v1_chr16_-_48419322 BC018193 BC035562 NM_003031 AK225895 U76247	-167447	-	NM_001006610 AK023458 AK313861 TSC_hg19_v1_chr16_-_48399799	-186908	-	BC042550 TSC_hg19_v1_chr16_-_48399765	-186939	-	BC051897 TSC_hg19_v1_chr16_-_48644092 AB014515 BC152472 NM_153029	57417	-	AB527638 TSC_hg19_v1_chr16_-_49315397	728694	-	BC093692 BC093718 TSC_hg19_v1_chr16_-_49315528	728801	-	BC018193|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC035562|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_003031|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK225895|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##U76247|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##NM_001006610|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK023458|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##AK313861|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC042550|SIAH1|6477|seven in absentia homolog 1 (Drosophila)##BC051897|N4BP1|9683|NEDD4 binding protein 1##AB014515|N4BP1|9683|NEDD4 binding protein 1##BC152472|N4BP1|9683|NEDD4 binding protein 1##NM_153029|N4BP1|9683|NEDD4 binding protein 1##BC093692|CBLN1|869|cerebellin 1 precursor##BC093718|CBLN1|869|cerebellin 1 precursor	1.982226	0.0	
chr18	60547327	60547475	reg1018412.p1	3.839	+	TSC_hg19_v1_chr18_+_60384261 BC126277 BC014927 AK001924 AB385360	-163093	+	TSC_hg19_v1_chr18_+_60383911 AB011178	-163475	+	TSC_hg19_v1_chr18_+_60382695 NM_194449	-164737	+	TSC_hg19_v1_chr18_-_60795898 AF401211	248534	-	BC027258 NM_000633 NM_000657	439159	-	TSC_hg19_v1_chr18_-_60986977 X06487	439592	-	BC126277|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##BC014927|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AK001924|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AB011178|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##NM_194449|PHLPP1|23239|PH domain and leucine rich repeat protein phosphatase 1##AF401211|BCL2|596|B-cell CLL/lymphoma 2##BC027258|BCL2|596|B-cell CLL/lymphoma 2##NM_000633|BCL2|596|B-cell CLL/lymphoma 2##NM_000657|BCL2|596|B-cell CLL/lymphoma 2##X06487|BCL2|596|B-cell CLL/lymphoma 2	0.896802	0.0	denovo_WM_7:46:0.666
chr2	204571159	204571310	reg1010917.p1	3.839	+	TSC_hg19_v1_chr2_-_204399987 BC032486 AK096270 AB053311 AJ584699 AY494951 AY523977 AY523978 NM_203365 NM_213589	-171088	-	TSC_hg19_v1_chr2_+_204193004 NM_005759 AK311427 AK302853 AK294429 AK299824 AK316000 BC001439 AB590360 AF260261 BT009920 CU674706 DQ890735 DQ893907	-378099	+	TSC_hg19_v1_chr2_+_204103740 AF183412 AK297082 BC093022 BC033752 BC020616 AL832998 AY359068 AK307931 DQ890918 DQ894068 DQ894069 CU676580	-467513	+	NM_001243077 NM_001243078 NM_006139 AJ517504 AK313313 J02988 TSC_hg19_v1_chr2_+_204571361 AK303421	46	+	BC093698 BC112085 TSC_hg19_v1_chr2_+_204571384 AK292986 AB590652 AF222341 AF222342 AF222343 AJ295273	165	+	BC070162 AF414120 NM_001037631 NM_005214 AK313732 BC069566 BC074893 BC074842 AB590653 AF486806 AY209009 AY792514 AY999702 DQ785106 L15006	161353	+	AK096270|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AB053311|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AJ584699|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY494951|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY523977|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY523978|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_203365|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_213589|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_005759|ABI2|10152|abl-interactor 2##AK302853|ABI2|10152|abl-interactor 2##AK294429|ABI2|10152|abl-interactor 2##AK299824|ABI2|10152|abl-interactor 2##AK316000|ABI2|10152|abl-interactor 2##BC001439|ABI2|10152|abl-interactor 2##AF260261|ABI2|10152|abl-interactor 2##BT009920|ABI2|10152|abl-interactor 2##DQ890735|ABI2|10152|abl-interactor 2##DQ893907|ABI2|10152|abl-interactor 2##AF183412|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK297082|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC093022|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC033752|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC020616|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AL832998|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AY359068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK307931|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ890918|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894069|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##NM_001243077|CD28|940|CD28 molecule##NM_001243078|CD28|940|CD28 molecule##NM_006139|CD28|940|CD28 molecule##AJ517504|CD28|940|CD28 molecule##AK313313|CD28|940|CD28 molecule##J02988|CD28|940|CD28 molecule##AK303421|CD28|940|CD28 molecule##BC093698|CD28|940|CD28 molecule##BC112085|CD28|940|CD28 molecule##AK292986|CD28|940|CD28 molecule##AF222341|CD28|940|CD28 molecule##AF222342|CD28|940|CD28 molecule##AF222343|CD28|940|CD28 molecule##AJ295273|CD28|940|CD28 molecule##BC070162|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AF414120|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##NM_001037631|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##NM_005214|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AK313732|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC069566|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC074893|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##BC074842|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AF486806|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY209009|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY792514|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##AY999702|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##DQ785106|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4##L15006|CTLA4|1493|cytotoxic T-lymphocyte-associated protein 4	0.0	0.0	
chr2	46072126	46072306	reg1007781.p1	3.839	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-193142	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-233809	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-277088	-	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	452375	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	452759	+	NM_001145051	634487	+	AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375	0.999729	0.0	denovo_WM_7:-4:0.230	denovo_WM_7:-5:0.230	denovo_WM_7:-6:0.230	denovo_WM_7:-7:0.230
chr3	194131016	194131178	reg1004321.p2	3.839	+	NM_004488	-11103	-	BC101064 BC101065 TSC_hg19_v1_chr3_-_194090471 AK125112 NM_001135057 NM_130830	-40630	-	BC031569 BC042334 TSC_hg19_v1_chr3_-_194072058 BC137398 BC137403 NM_001080513	-59023	-	NM_024524	57870	-	TSC_hg19_v1_chr3_+_194207865 AK091527	76705	+	TSC_hg19_v1_chr3_+_194304750 AK124168	173636	+	NM_004488|GP5|2814|glycoprotein V (platelet)##BC101064|LRRC15|131578|leucine rich repeat containing 15##BC101065|LRRC15|131578|leucine rich repeat containing 15##AK125112|LRRC15|131578|leucine rich repeat containing 15##NM_001135057|LRRC15|131578|leucine rich repeat containing 15##NM_130830|LRRC15|131578|leucine rich repeat containing 15##BC031569|CPN2|1370|carboxypeptidase N, polypeptide 2##BC042334|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137398|CPN2|1370|carboxypeptidase N, polypeptide 2##BC137403|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_001080513|CPN2|1370|carboxypeptidase N, polypeptide 2##NM_024524|ATP13A3|79572|ATPase type 13A3##AK091527|FLJ34208|401106|uncharacterized LOC401106	1.994166	0.0	denovo_WM_7:-43:0.284	denovo_WM_7:-44:0.237	denovo_WM_7:-62:0.237	denovo_WM_7:-63:0.285
chr4	170217080	170217164	reg1003798.p1	3.839	+	TSC_hg19_v1_chr4_-_170192202 NM_020870	-24902	-	AK021429 TSC_hg19_v1_chr4_-_170192108	-25015	-	TSC_hg19_v1_chr4_-_170192099 BC053671	-25075	-	BC015147 BC114491 AB067488 CR933642 AL050385 TSC_hg19_v1_chr4_-_170533735 BC068201 CR936672	316514	-	TSC_hg19_v1_chr4_-_170533762 NM_001199397 NM_001199398 NM_001199399 NM_001199400 NM_012224	316647	-	TSC_hg19_v1_chr4_+_170541683 NM_001243372 NM_001829 NM_173872	324549	+	NM_020870|SH3RF1|57630|SH3 domain containing ring finger 1##AK021429|SH3RF1|57630|SH3 domain containing ring finger 1##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1##BC015147|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC114491|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AB067488|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR933642|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##AL050385|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##BC068201|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##CR936672|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199397|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199398|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199399|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001199400|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_012224|NEK1|4750|NIMA (never in mitosis gene a)-related kinase 1##NM_001243372|CLCN3|1182|chloride channel 3##NM_001829|CLCN3|1182|chloride channel 3##NM_173872|CLCN3|1182|chloride channel 3	0.145205	0.0	
chr6	34360631	34360746	reg1015375.p1	3.839	+	TSC_hg19_v1_chr6_-_34360442 NM_006703	-237	-	TSC_hg19_v1_chr6_-_34360425 BC007727	-268	-	TSC_hg19_v1_chr6_-_34360360 AK313440	-353	-	TSC_hg19_v1_chr6_-_34393847 NM_001203245 U14972 BC070235 BC001032 BC071946 AK311797 NM_001014 NM_001202470 NM_001204091	33161	-	TSC_hg19_v1_chr6_+_34433880 AK289956 NM_020804 AB037800 AL834211 AF242529	73216	+	TSC_hg19_v1_chr6_+_34482648 AK294132 NM_001199583 BC040228	121966	+	NM_006703|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##BC007727|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##AK313440|NUDT3|11165|nudix (nucleoside diphosphate linked moiety X)-type motif 3##NM_001203245|RPS10|6204|ribosomal protein S10##U14972|RPS10|6204|ribosomal protein S10##BC070235|RPS10|6204|ribosomal protein S10##BC001032|RPS10|6204|ribosomal protein S10##BC071946|RPS10|6204|ribosomal protein S10##AK311797|RPS10|6204|ribosomal protein S10##NM_001014|RPS10|6204|ribosomal protein S10##NM_001202470|RPS10-NUDT3|100529239|RPS10-NUDT3 readthrough##NM_001204091|RPS10|6204|ribosomal protein S10##AK289956|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_020804|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AB037800|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AL834211|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AF242529|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##AK294132|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##NM_001199583|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1##BC040228|PACSIN1|29993|protein kinase C and casein kinase substrate in neurons 1	0.0	0.0	
chr10	61640883	61640959	reg1012177.p1	3.838	+	AK126643 TSC_hg19_v1_chr10_-_61469461 NM_194298	-171197	-	AK299924 NM_001143773	-518261	-	CU687880 DQ894404 EU176262 AK294805 AK289796 TSC_hg19_v1_chr10_-_61122308 BC036453 AK316542 BC064431 NM_001001971 NM_001166698 NM_198215	-518636	-	AB590767 TSC_hg19_v1_chr10_-_61666205 S72869	25280	-	D90075 BC064391 TSC_hg19_v1_chr10_-_61666249 BC036757 BC022284 AK292593 NM_005436	25403	-	AK292927 AK092527 NM_001149	259795	-	AK126643|LOC100129721|100129721|uncharacterized LOC100129721##NM_194298|SLC16A9|220963|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)##AK299924|FAM13C|220965|family with sequence similarity 13, member C##NM_001143773|FAM13C|220965|family with sequence similarity 13, member C##DQ894404|FAM13C|220965|family with sequence similarity 13, member C##EU176262|FAM13C|220965|family with sequence similarity 13, member C##AK294805|FAM13C|220965|family with sequence similarity 13, member C##AK289796|FAM13C|220965|family with sequence similarity 13, member C##BC036453|FAM13C|220965|family with sequence similarity 13, member C##AK316542|FAM13C|220965|family with sequence similarity 13, member C##BC064431|FAM13C|220965|family with sequence similarity 13, member C##NM_001001971|FAM13C|220965|family with sequence similarity 13, member C##NM_001166698|FAM13C|220965|family with sequence similarity 13, member C##NM_198215|FAM13C|220965|family with sequence similarity 13, member C##S72869|CCDC6|8030|coiled-coil domain containing 6##BC064391|CCDC6|8030|coiled-coil domain containing 6##BC036757|CCDC6|8030|coiled-coil domain containing 6##BC022284|CCDC6|8030|coiled-coil domain containing 6##AK292593|CCDC6|8030|coiled-coil domain containing 6##NM_005436|CCDC6|8030|coiled-coil domain containing 6##AK292927|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##AK092527|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)##NM_001149|ANK3|288|ankyrin 3, node of Ranvier (ankyrin G)	0.0	0.0	
chr16	14726494	14726674	reg1019518.p1	3.838	+	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	-2451	-	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	-2556	-	BC047761 TSC_hg19_v1_chr16_+_14294209	-432386	+	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	155	+	TSC_hg19_v1_chr16_+_14726837 BC003054 AK291114 AK297067	259	+	BC106731 BC106732 BC111804 NM_003561 U95301	61893	-	AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##BC047761|MKL2|57496|MKL/myocardin-like 2##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator##BC003054|BFAR|51283|bifunctional apoptosis regulator##AK291114|BFAR|51283|bifunctional apoptosis regulator##AK297067|BFAR|51283|bifunctional apoptosis regulator##BC106731|PLA2G10|8399|phospholipase A2, group X##BC106732|PLA2G10|8399|phospholipase A2, group X##BC111804|PLA2G10|8399|phospholipase A2, group X##NM_003561|PLA2G10|8399|phospholipase A2, group X##U95301|PLA2G10|8399|phospholipase A2, group X	0.0	0.0	
chr19	12035295	12035454	reg1018649.p1	3.838	+	TSC_hg19_v1_chr19_+_11998643 BC051309 NM_021915 EU446913	-36701	+	AL833935 NM_152262	-58531	+	TSC_hg19_v1_chr19_+_11925098 AK095252 NM_152357 BC035760	-110268	+	TSC_hg19_v1_chr19_+_12035889 AK299182 AK308305 AL136732 NM_144566 BC144406 BC136777	544	+	AK092240 AK299224 AX747424 NM_001012753 BC105711 BC105712 BC105713	40508	+	TSC_hg19_v1_chr19_-_12146492 AK129553 BC047412	111115	-	BC051309|ZNF69|7620|zinc finger protein 69##NM_021915|ZNF69|7620|zinc finger protein 69##EU446913|ZNF69|7620|zinc finger protein 69##AL833935|ZNF439|90594|zinc finger protein 439##NM_152262|ZNF439|90594|zinc finger protein 439##AK095252|ZNF440|126070|zinc finger protein 440##NM_152357|ZNF440|126070|zinc finger protein 440##BC035760|ZNF440|126070|zinc finger protein 440##AK299182|ZNF763|284390|zinc finger protein 763##AK308305|ZNF700|90592|zinc finger protein 700##AL136732|ZNF700|90592|zinc finger protein 700##NM_144566|ZNF700|90592|zinc finger protein 700##BC144406|ZNF700|90592|zinc finger protein 700##BC136777|ZNF700|90592|zinc finger protein 700##AK092240|ZNF763|284390|zinc finger protein 763##AK299224|ZNF763|284390|zinc finger protein 763##NM_001012753|ZNF763|284390|zinc finger protein 763##BC105711|ZNF763|284390|zinc finger protein 763##BC105712|ZNF763|284390|zinc finger protein 763##BC105713|ZNF763|284390|zinc finger protein 763##BC047412|ZNF433|163059|zinc finger protein 433	0.315169	0.0	denovo_WM_7:-102:0.207
chr7	12521584	12521727	reg1017788.p1	3.838	+	NM_001135924	-77804	-	TSC_hg19_v1_chr7_-_12443512 AK075525 BC144316 BC144319	-78123	-	TSC_hg19_v1_chr7_+_12250952 NM_001134232 NM_018374 AK311651 AK002135 BC033901 BC028108 BC039741 AK223263	-270730	+	AB067492 NM_001112706 AK290363 AK075123 TSC_hg19_v1_chr7_+_12610346 BC021090 AB590413 DQ892033 DQ895224 AF276507	88652	+	AK027778 NM_033128	107492	+	TSC_hg19_v1_chr7_+_12726499 NM_001037164 NM_212460 BC039123 BC001111 BC003027	204831	+	NM_001135924|VWDE|221806|von Willebrand factor D and EGF domains##AK075525|VWDE|221806|von Willebrand factor D and EGF domains##BC144316|VWDE|221806|von Willebrand factor D and EGF domains##BC144319|VWDE|221806|von Willebrand factor D and EGF domains##NM_001134232|TMEM106B|54664|transmembrane protein 106B##NM_018374|TMEM106B|54664|transmembrane protein 106B##AK311651|TMEM106B|54664|transmembrane protein 106B##AK002135|TMEM106B|54664|transmembrane protein 106B##BC033901|TMEM106B|54664|transmembrane protein 106B##BC028108|TMEM106B|54664|transmembrane protein 106B##BC039741|TMEM106B|54664|transmembrane protein 106B##AK223263|TMEM106B|54664|transmembrane protein 106B##AB067492|SCIN|85477|scinderin##NM_001112706|SCIN|85477|scinderin##AK290363|SCIN|85477|scinderin##AK075123|SCIN|85477|scinderin##BC021090|SCIN|85477|scinderin##DQ892033|SCIN|85477|scinderin##DQ895224|SCIN|85477|scinderin##AF276507|SCIN|85477|scinderin##AK027778|SCIN|85477|scinderin##NM_033128|SCIN|85477|scinderin##NM_001037164|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_212460|ARL4A|10124|ADP-ribosylation factor-like 4A##BC039123|ARL4A|10124|ADP-ribosylation factor-like 4A##BC001111|ARL4A|10124|ADP-ribosylation factor-like 4A##BC003027|ARL4A|10124|ADP-ribosylation factor-like 4A	0.093783	0.0	
chr11	6778735	6778849	reg1016325.p1	3.837	+	TSC_hg19_v1_chr11_-_6704541 CR457177 DQ891581 DQ894774 DQ895036 AB463889 BC012306 AK026857 AF164797 AF141338 NM_022061	-74218	-	TSC_hg19_v1_chr11_-_6676982 AB053446 NM_003737	-101829	-	TSC_hg19_v1_chr11_-_6643809 BC038382	-134931	-	NM_001004490 BC140734	11444	-	BC151143 NM_001004489	27455	+	BC101489 BC101491 NM_003696	38283	-	CR457177|MRPL17|63875|mitochondrial ribosomal protein L17##DQ891581|MRPL17|63875|mitochondrial ribosomal protein L17##DQ894774|MRPL17|63875|mitochondrial ribosomal protein L17##DQ895036|MRPL17|63875|mitochondrial ribosomal protein L17##BC012306|MRPL17|63875|mitochondrial ribosomal protein L17##AK026857|MRPL17|63875|mitochondrial ribosomal protein L17##AF164797|MRPL17|63875|mitochondrial ribosomal protein L17##AF141338|MRPL17|63875|mitochondrial ribosomal protein L17##NM_022061|MRPL17|63875|mitochondrial ribosomal protein L17##AB053446|DCHS1|8642|dachsous 1 (Drosophila)##NM_003737|DCHS1|8642|dachsous 1 (Drosophila)##BC038382|DCHS1|8642|dachsous 1 (Drosophila)##NM_001004490|OR2AG2|338755|olfactory receptor, family 2, subfamily AG, member 2##BC140734|OR2AG2|338755|olfactory receptor, family 2, subfamily AG, member 2##BC151143|OR2AG1|144125|olfactory receptor, family 2, subfamily AG, member 1##NM_001004489|OR2AG1|144125|olfactory receptor, family 2, subfamily AG, member 1##BC101489|OR6A2|8590|olfactory receptor, family 6, subfamily A, member 2##BC101491|OR6A2|8590|olfactory receptor, family 6, subfamily A, member 2##NM_003696|OR6A2|8590|olfactory receptor, family 6, subfamily A, member 2	0.0	0.89051	CTCF.p2:14:0.891
chr20	10340474	10340602	reg1012031.p1	3.837	+	TSC_hg19_v1_chr20_-_10200139 AK124961	-140395	-	TSC_hg19_v1_chr20_+_10199575 NM_003081 NM_130811 AK094560 AK098347 D21267 AK223617 AK314359 AK289647 BC010647 BX647443 AK098767 L19760 L19761	-141011	+	NM_022096 NM_198798 AK097689 TSC_hg19_v1_chr20_+_10015744 BC022878 BC028189 BC011591	-324806	+	AF221993 NM_018848	72031	-	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	74301	-	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	75438	+	AK124961|LOC100131208|100131208|uncharacterized LOC100131208##NM_003081|SNAP25|6616|synaptosomal-associated protein, 25kDa##NM_130811|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK094560|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK098347|SNAP25|6616|synaptosomal-associated protein, 25kDa##D21267|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK223617|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK314359|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK289647|SNAP25|6616|synaptosomal-associated protein, 25kDa##BC010647|SNAP25|6616|synaptosomal-associated protein, 25kDa##BX647443|SNAP25|6616|synaptosomal-associated protein, 25kDa##AK098767|SNAP25|6616|synaptosomal-associated protein, 25kDa##L19760|SNAP25|6616|synaptosomal-associated protein, 25kDa##L19761|SNAP25|6616|synaptosomal-associated protein, 25kDa##NM_022096|ANKRD5|63926|ankyrin repeat domain 5##NM_198798|ANKRD5|63926|ankyrin repeat domain 5##AK097689|ANKRD5|63926|ankyrin repeat domain 5##BC022878|ANKRD5|63926|ankyrin repeat domain 5##BC028189|ANKRD5|63926|ankyrin repeat domain 5##BC011591|ANKRD5|63926|ankyrin repeat domain 5##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94	0.0	0.0	
chr2	33431306	33431453	reg1017675.p1	3.837	+	TSC_hg19_v1_chr2_+_33359657 NM_000627 NM_001166264 NM_001166265 NM_001166266 AB208801 BC130289 BC144127 BC144128 M34057 AB384737 AF489528	-71674	+	NM_206943	-259011	+	NM_001193509 NM_017735 AK299196 BC063791 TSC_hg19_v1_chr2_+_32853177 AK027570	-578245	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	230069	+	NM_001139488	269941	+	TSC_hg19_v1_chr2_+_33701715 BX647990	270317	+	NM_000627|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166264|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166265|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166266|LTBP1|4052|latent transforming growth factor beta binding protein 1##AB208801|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC130289|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144127|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144128|LTBP1|4052|latent transforming growth factor beta binding protein 1##M34057|LTBP1|4052|latent transforming growth factor beta binding protein 1##AF489528|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_206943|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001193509|TTC27|55622|tetratricopeptide repeat domain 27##NM_017735|TTC27|55622|tetratricopeptide repeat domain 27##AK299196|TTC27|55622|tetratricopeptide repeat domain 27##BC063791|TTC27|55622|tetratricopeptide repeat domain 27##AK027570|TTC27|55622|tetratricopeptide repeat domain 27##AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)	0.0	0.0	
chr2	69870052	69870232	reg1011938.p1	3.837	+	BC113692 BC113694 AY335194 NM_001002755 NM_001002756 NM_001002757 NM_015700 TSC_hg19_v1_chr2_-_69664788	-205383	-	TSC_hg19_v1_chr2_-_69664606 AY286306 AY286307 BX538347	-205528	-	AJ132584 AF132967 AB528729 HQ258750 TSC_hg19_v1_chr2_-_69664568 AK300700 AK308567	-205569	-	TSC_hg19_v1_chr2_-_69870783 AK310951 AK056043	626	-	TSC_hg19_v1_chr2_-_69870872 AB028971	715	-	NM_014911 TSC_hg19_v1_chr2_-_69871063 BC090950	950	-	BC113692|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BC113694|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY335194|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002755|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002756|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_001002757|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##NM_015700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286306|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AY286307|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##BX538347|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AJ132584|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AF132967|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##HQ258750|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK300700|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK308567|NFU1|27247|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)##AK310951|AAK1|22848|AP2 associated kinase 1##AK056043|AAK1|22848|AP2 associated kinase 1##AB028971|AAK1|22848|AP2 associated kinase 1##NM_014911|AAK1|22848|AP2 associated kinase 1##BC090950|AAK1|22848|AP2 associated kinase 1	0.997791	0.0	
chr3	81810943	81811082	reg1019051.p1	3.837	+	TSC_hg19_v1_chr3_-_81810971 NM_000158	-70	-	TSC_hg19_v1_chr3_-_81810866 AB209731 BC012098	-164	-	TSC_hg19_v1_chr3_-_81810802 AK297939	-207	-	BC031255 TSC_hg19_v1_chr3_+_82035308	224290	+	TSC_hg19_v1_chr3_+_85008139 AB646739 BC105999 NM_001167674 NM_001167675 AK295885 BC063484 AL834270	3197117	+	AF538973 NM_153184	3964619	+	NM_000158|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB209731|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##BC012098|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AK297939|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##AB646739|CADM2|253559|cell adhesion molecule 2##BC105999|CADM2|253559|cell adhesion molecule 2##NM_001167674|CADM2|253559|cell adhesion molecule 2##NM_001167675|CADM2|253559|cell adhesion molecule 2##AK295885|CADM2|253559|cell adhesion molecule 2##AL834270|CADM2|253559|cell adhesion molecule 2##AF538973|CADM2|253559|cell adhesion molecule 2##NM_153184|CADM2|253559|cell adhesion molecule 2	0.0	0.416168	CTCF.p2:-49:0.416
chr14	25134825	25134942	reg1014536.p1	3.836	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-31465	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-56022	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-89437	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	384355	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1932105	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	4101345	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	0.0	0.0	
chr1	52337230	52337381	reg1012936.p2	3.836	+	TSC_hg19_v1_chr1_+_52195604 AK022554	-141651	+	TSC_hg19_v1_chr1_+_52195549 AK027707 BC025978	-141759	+	TSC_hg19_v1_chr1_+_52195487 NM_148904 NM_148905 NM_148907 AK315167	-141828	+	AY360265 AK311631 NM_001242361	6395	-	TSC_hg19_v1_chr1_-_52344010 AK299271	6729	-	TSC_hg19_v1_chr1_-_52344354 AY049784	7028	-	AK022554|OSBPL9|114883|oxysterol binding protein-like 9##AK027707|OSBPL9|114883|oxysterol binding protein-like 9##BC025978|OSBPL9|114883|oxysterol binding protein-like 9##NM_148904|OSBPL9|114883|oxysterol binding protein-like 9##NM_148905|OSBPL9|114883|oxysterol binding protein-like 9##NM_148907|OSBPL9|114883|oxysterol binding protein-like 9##AK315167|OSBPL9|114883|oxysterol binding protein-like 9##AY360265|NRD1|4898|nardilysin (N-arginine dibasic convertase)##AK311631|NRD1|4898|nardilysin (N-arginine dibasic convertase)##NM_001242361|NRD1|4898|nardilysin (N-arginine dibasic convertase)##AK299271|NRD1|4898|nardilysin (N-arginine dibasic convertase)##AY049784|NRD1|4898|nardilysin (N-arginine dibasic convertase)	0.998872	0.0	denovo_WM_7:-94:0.232	denovo_WM_7:-95:0.671
chr15	42103720	42103900	reg1016143.p1	3.836	+	AK302482 TSC_hg19_v1_chr15_+_42066879 AL833267 AB011168 BC113983 BC114493 AK091616 AK292414	-36972	+	BC036660 NM_001128608 NM_014994 TSC_hg19_v1_chr15_+_42066666 BX648786	-37152	+	AB011090 TSC_hg19_v1_chr15_+_42052630	-51207	+	TSC_hg19_v1_chr15_+_42120310 AK289833 NM_001114632 NM_001198588 NM_005090 AB209150 AK000814 BC139899 AK000663 AK225503 AK000550 BC067834 AF065215 AK290051 DQ523799 DQ523800 AF121908 BC110415 BC025290 CU692962	16448	+	AK310651 NM_001114633 AK299419	27217	+	AF233523 NM_016642	82464	-	AK302482|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AL833267|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AB011168|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BC113983|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BC114493|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AK091616|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AK292414|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BC036660|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##NM_001128608|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##NM_014994|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##BX648786|MAPKBP1|23005|mitogen-activated protein kinase binding protein 1##AB011090|MGA|23269|MAX gene associated##AK289833|JMJD7|100137047|jumonji domain containing 7##NM_001114632|JMJD7|100137047|jumonji domain containing 7##NM_001198588|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##NM_005090|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AB209150|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AK000814|JMJD7|100137047|jumonji domain containing 7##BC139899|JMJD7|100137047|jumonji domain containing 7##AK000663|JMJD7|100137047|jumonji domain containing 7##AK225503|JMJD7|100137047|jumonji domain containing 7##AK000550|JMJD7|100137047|jumonji domain containing 7##BC067834|JMJD7|100137047|jumonji domain containing 7##AF065215|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AK290051|JMJD7|100137047|jumonji domain containing 7##DQ523799|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##DQ523800|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##AF121908|JMJD7-PLA2G4B|8681|JMJD7-PLA2G4B readthrough##BC110415|JMJD7|100137047|jumonji domain containing 7##BC025290|JMJD7|100137047|jumonji domain containing 7##AK310651|PLA2G4B|100137049|phospholipase A2, group IVB (cytosolic)##NM_001114633|PLA2G4B|100137049|phospholipase A2, group IVB (cytosolic)##AK299419|PLA2G4B|100137049|phospholipase A2, group IVB (cytosolic)##AF233523|SPTBN5|51332|spectrin, beta, non-erythrocytic 5##NM_016642|SPTBN5|51332|spectrin, beta, non-erythrocytic 5	0.0	0.206111	CTCF.p2:-20:0.206
chr15	99495704	99495843	reg1015982.p2	3.836	+	TSC_hg19_v1_chr15_+_99192708 NM_000875 X04434 BC113610 BC113612 BC143721 AB463073 EU826611 EU826612 BC111788	-303017	+	TSC_hg19_v1_chr15_+_99191767 AB425196	-303802	+	AK097062 AK097062 NM_182562	-438163	-	BC104743 BC104744 BC105686 NM_001102612	53064	-	AK058162 NM_001167902	55250	-	TSC_hg19_v1_chr15_+_99645285 BC151243 AB002351 AJ310521 AJ310522 AJ697971 NM_015286 NM_145728 AF359284	149467	+	NM_000875|IGF1R|3480|insulin-like growth factor 1 receptor##X04434|IGF1R|3480|insulin-like growth factor 1 receptor##BC113610|IGF1R|3480|insulin-like growth factor 1 receptor##BC113612|IGF1R|3480|insulin-like growth factor 1 receptor##BC143721|IGF1R|3480|insulin-like growth factor 1 receptor##EU826611|IGF1R|3480|insulin-like growth factor 1 receptor##EU826612|IGF1R|3480|insulin-like growth factor 1 receptor##AB425196|IGF1R|3480|insulin-like growth factor 1 receptor##AK097062|FAM169B|283777|family with sequence similarity 169, member B##AK097062|FAM169B|283777|family with sequence similarity 169, member B##NM_182562|FAM169B|283777|family with sequence similarity 169, member B##BC104743|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC104744|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC105686|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001102612|PGPEP1L|145814|pyroglutamyl-peptidase I-like##AK058162|PGPEP1L|145814|pyroglutamyl-peptidase I-like##NM_001167902|PGPEP1L|145814|pyroglutamyl-peptidase I-like##BC151243|SYNM|23336|synemin, intermediate filament protein##AB002351|SYNM|23336|synemin, intermediate filament protein##AJ310521|SYNM|23336|synemin, intermediate filament protein##AJ310522|SYNM|23336|synemin, intermediate filament protein##AJ697971|SYNM|23336|synemin, intermediate filament protein##NM_015286|SYNM|23336|synemin, intermediate filament protein##NM_145728|SYNM|23336|synemin, intermediate filament protein##AF359284|SYNM|23336|synemin, intermediate filament protein	0.0	0.0	
chr19	46018695	46018854	reg1015677.p1	3.836	+	TSC_hg19_v1_chr19_+_46010748 BC026019 BC038224 Z46389	-8001	+	TSC_hg19_v1_chr19_+_46010736 AK314812	-8051	+	TSC_hg19_v1_chr19_+_46010688 NM_003370	-8086	+	AB528200 AM392686 EU832556 TSC_hg19_v1_chr19_-_46088061 BC064146 BC005059 BC047316	69268	-	TSC_hg19_v1_chr19_-_46088075 AK025840	69304	-	TSC_hg19_v1_chr19_-_46088084 AK098798 NM_001017989 NM_025136	69330	-	BC026019|VASP|7408|vasodilator-stimulated phosphoprotein##BC038224|VASP|7408|vasodilator-stimulated phosphoprotein##Z46389|VASP|7408|vasodilator-stimulated phosphoprotein##AK314812|VASP|7408|vasodilator-stimulated phosphoprotein##NM_003370|VASP|7408|vasodilator-stimulated phosphoprotein##AM392686|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##EU832556|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC064146|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC005059|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##BC047316|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AK025840|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##AK098798|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_001017989|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)##NM_025136|OPA3|80207|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	0.99541	0.0	denovo_WM_7:30:0.707	denovo_WM_7:31:0.244
chr7	6383756	6383854	reg1013152.p1	3.836	+	AB528964 DQ891736 DQ894912 EU176610 AJ223957 TSC_hg19_v1_chr7_-_6312242 AJ005197 NM_004227 AK313728 BC028717	-71574	-	TSC_hg19_v1_chr7_+_6144605 AK022759 AY618868 BC060846 AK309375	-239207	+	TSC_hg19_v1_chr7_+_6144564 NM_032172 AK298164	-239262	+	TSC_hg19_v1_chr7_-_6388581 AK311878 AF533707 BC006110 NM_001037163 BC142977	4705	-	TSC_hg19_v1_chr7_+_6414179 NM_006908 NM_018890 AK054993 BC107748 AK291806 AB209410 BC050687 AK291815 AY279384 BC004247 AB451238 AB451363 AB464133 AF136373 AF498964 AJ132694 BT007121 CU690768 EU831965 EU832058 EU832640 EU832717 M29870 M31467	30422	+	TSC_hg19_v1_chr7_-_6474593 AK298910	90785	-	DQ891736|CYTH3|9265|cytohesin 3##DQ894912|CYTH3|9265|cytohesin 3##EU176610|CYTH3|9265|cytohesin 3##AJ223957|CYTH3|9265|cytohesin 3##AJ005197|CYTH3|9265|cytohesin 3##NM_004227|CYTH3|9265|cytohesin 3##AK313728|CYTH3|9265|cytohesin 3##BC028717|CYTH3|9265|cytohesin 3##AK022759|USP42|84132|ubiquitin specific peptidase 42##AY618868|USP42|84132|ubiquitin specific peptidase 42##BC060846|USP42|84132|ubiquitin specific peptidase 42##AK309375|USP42|84132|ubiquitin specific peptidase 42##NM_032172|USP42|84132|ubiquitin specific peptidase 42##AK298164|USP42|84132|ubiquitin specific peptidase 42##AK311878|C7orf70|84792|chromosome 7 open reading frame 70##AF533707|C7orf70|84792|chromosome 7 open reading frame 70##BC006110|C7orf70|84792|chromosome 7 open reading frame 70##NM_001037163|C7orf70|84792|chromosome 7 open reading frame 70##BC142977|C7orf70|84792|chromosome 7 open reading frame 70##NM_006908|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##NM_018890|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK054993|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC107748|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291806|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB209410|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC050687|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK291815|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AY279384|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BC004247|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451238|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AB451363|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF136373|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AF498964|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AJ132694|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##BT007121|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU831965|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832058|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832640|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##EU832717|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M29870|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##M31467|RAC1|5879|ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)##AK298910|DAGLB|221955|diacylglycerol lipase, beta	0.999789	0.0	denovo_WM_7:-17:0.523	denovo_WM_7:-18:0.203	denovo_WM_7:-20:0.202
chr8	137083411	137083535	reg1011258.p1	3.836	+	AB463818 DQ890886 DQ894041 AF051322 TSC_hg19_v1_chr8_+_136470277	-613272	+	TSC_hg19_v1_chr8_+_136469698 BC068536 BC032606 AF051321 NM_006558 AF069681	-613815	+	BC101766 BC101768 BC143519 TSC_hg19_v1_chr8_-_135725284 AK300471 AK094089 AB167738 AB167739 AL832066 NM_001174157 NM_020863	-1358199	-	AB196635 AK091433 AX746980 NM_015912 TSC_hg19_v1_chr8_-_139509141	2425633	-	AF406780 NM_152888 TSC_hg19_v1_chr8_-_139926253	2842771	-	AF212829 AF279809 AY190605 AF257080 BC075079 BC075080 BC112063 BC112065 AF248241 NM_016601 TSC_hg19_v1_chr8_-_140715330	3631809	-	DQ890886|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##DQ894041|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051322|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC068536|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC032606|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF051321|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##NM_006558|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##AF069681|KHDRBS3|10656|KH domain containing, RNA binding, signal transduction associated 3##BC101766|ZFAT|57623|zinc finger and AT hook domain containing##BC101768|ZFAT|57623|zinc finger and AT hook domain containing##BC143519|ZFAT|57623|zinc finger and AT hook domain containing##AK300471|ZFAT|57623|zinc finger and AT hook domain containing##AK094089|ZFAT|57623|zinc finger and AT hook domain containing##AB167738|ZFAT|57623|zinc finger and AT hook domain containing##AB167739|ZFAT|57623|zinc finger and AT hook domain containing##AL832066|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174157|ZFAT|57623|zinc finger and AT hook domain containing##NM_020863|ZFAT|57623|zinc finger and AT hook domain containing##AB196635|FAM135B|51059|family with sequence similarity 135, member B##AK091433|FAM135B|51059|family with sequence similarity 135, member B##NM_015912|FAM135B|51059|family with sequence similarity 135, member B##AF406780|COL22A1|169044|collagen, type XXII, alpha 1##NM_152888|COL22A1|169044|collagen, type XXII, alpha 1##AF212829|KCNK9|51305|potassium channel, subfamily K, member 9##AF279809|KCNK9|51305|potassium channel, subfamily K, member 9##AY190605|KCNK9|51305|potassium channel, subfamily K, member 9##AF257080|KCNK9|51305|potassium channel, subfamily K, member 9##BC075079|KCNK9|51305|potassium channel, subfamily K, member 9##BC075080|KCNK9|51305|potassium channel, subfamily K, member 9##BC112063|KCNK9|51305|potassium channel, subfamily K, member 9##BC112065|KCNK9|51305|potassium channel, subfamily K, member 9##AF248241|KCNK9|51305|potassium channel, subfamily K, member 9##NM_016601|KCNK9|51305|potassium channel, subfamily K, member 9	0.186649	0.0	
chr9	119288866	119288978	reg1017089.p1	3.836	+	TSC_hg19_v1_chr9_+_118916069 BC054010 BC057782 NM_002581 BC029404	-372852	+	AB022761 NM_017418	-1384826	+	AB210038 TSC_hg19_v1_chr9_-_117880433 AK304015 X78565 NM_002160	-1408449	-	BC101667 BC093835 BC143289 BC143292 BC143293 TSC_hg19_v1_chr9_-_119449510 BC029272 NM_198186 BC010680 AK024064 NM_001184734 NM_001184735 NM_198187 NM_198188	160540	-	TSC_hg19_v1_chr9_+_119449616 NM_001099679 NM_012210 AK314264 AX775779 BC003154 U18543	160684	+	TSC_hg19_v1_chr9_-_120177318 AB014534 BC146756 NM_014010	888391	-	NM_002581|PAPPA|5069|pregnancy-associated plasma protein A, pappalysin 1##AB022761|DEC1|50514|deleted in esophageal cancer 1##NM_017418|DEC1|50514|deleted in esophageal cancer 1##AB210038|TNC|3371|tenascin C##AK304015|TNC|3371|tenascin C##X78565|TNC|3371|tenascin C##NM_002160|TNC|3371|tenascin C##BC101667|ASTN2|23245|astrotactin 2##BC093835|ASTN2|23245|astrotactin 2##BC143289|ASTN2|23245|astrotactin 2##BC143292|ASTN2|23245|astrotactin 2##BC143293|ASTN2|23245|astrotactin 2##BC029272|ASTN2|23245|astrotactin 2##NM_198186|ASTN2|23245|astrotactin 2##BC010680|ASTN2|23245|astrotactin 2##AK024064|ASTN2|23245|astrotactin 2##NM_001184734|ASTN2|23245|astrotactin 2##NM_001184735|ASTN2|23245|astrotactin 2##NM_198187|ASTN2|23245|astrotactin 2##NM_198188|ASTN2|23245|astrotactin 2##NM_001099679|TRIM32|22954|tripartite motif containing 32##NM_012210|TRIM32|22954|tripartite motif containing 32##AK314264|TRIM32|22954|tripartite motif containing 32##AX775779|TRIM32|22954|tripartite motif containing 32##BC003154|TRIM32|22954|tripartite motif containing 32##U18543|TRIM32|22954|tripartite motif containing 32##AB014534|ASTN2|23245|astrotactin 2##BC146756|ASTN2|23245|astrotactin 2##NM_014010|ASTN2|23245|astrotactin 2	0.993909	0.0	denovo_WM_7:-13:0.981
chr1	142891158	142891277	reg1014366.p1	3.835	+	CR936796 TSC_hg19_v1_chr1_+_142618815 AK056396 AF277188	-272371	+	AK291502 AK307244 AK311502 NM_001004340 NM_001017986 NM_001244910 TSC_hg19_v1_chr1_-_120935945	-21955265	-	L03419 L03420 TSC_hg19_v1_chr1_-_120935918 BC110416 AK308886	-21955308	-	TSC_hg19_v1_chr1_-_143467618 BC070106	576408	-	BC071624 BC132962 AK097058 AK310056 TSC_hg19_v1_chr1_-_143744413 AK310186 AK309393	853188	-	HQ258079 BC130376 BC130378 NM_001123068	876647	-	AK291502|FCGR1A|2209|Fc fragment of IgG, high affinity Ia, receptor (CD64)##AK307244|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK311502|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001004340|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001017986|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##NM_001244910|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03419|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##L03420|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC110416|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##AK308886|FCGR1B|2210|Fc fragment of IgG, high affinity Ib, receptor (CD64)##BC071624|FLJ39739|388685|uncharacterized FLJ39739##BC132962|LOC100286793|100286793|uncharacterized LOC100286793##AK097058|FLJ39739|388685|uncharacterized FLJ39739##AK310056|FLJ39739|388685|uncharacterized FLJ39739##AK310186|FLJ39739|388685|uncharacterized FLJ39739##AK309393|FLJ39739|388685|uncharacterized FLJ39739##HQ258079|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130376|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##BC130378|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G##NM_001123068|PPIAL4G|644591|peptidylprolyl isomerase A (cyclophilin A)-like 4G	0.0	0.0	
chr11	68214800	68214900	reg1014080.p2	3.835	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-99414	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-134761	+	TSC_hg19_v1_chr11_-_68039453 NM_022338	-175392	-	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	13359	+	AK001920 TSC_hg19_v1_chr11_+_68367929	153026	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	237133	+	AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_022338|C11orf24|53838|chromosome 11 open reading frame 24##NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide	0.0	0.994564	CTCF.p2:15:0.995
chr1	206083896	206084076	reg1000905.p1	3.835	+	BC151208 BC136538 BC144233 AF331525 NM_052934 NM_134325	-171420	-	BC039170 BC063477 AK057131 AK290786 TSC_hg19_v1_chr1_-_205819261 NM_152491	-264727	-	TSC_hg19_v1_chr1_+_205782474 AK097788	-301485	+	TSC_hg19_v1_chr1_-_206137445 AK124556	53462	-	BC035696 NM_001123168 BC137545 BC137546	54930	+	NM_000707 AF030512 AF101726 L37112 AB528977 EU432111	140375	+	BC151208|SLC26A9|115019|solute carrier family 26, member 9##BC136538|SLC26A9|115019|solute carrier family 26, member 9##BC144233|SLC26A9|115019|solute carrier family 26, member 9##AF331525|SLC26A9|115019|solute carrier family 26, member 9##NM_052934|SLC26A9|115019|solute carrier family 26, member 9##NM_134325|SLC26A9|115019|solute carrier family 26, member 9##BC039170|PM20D1|148811|peptidase M20 domain containing 1##BC063477|PM20D1|148811|peptidase M20 domain containing 1##AK057131|PM20D1|148811|peptidase M20 domain containing 1##AK290786|PM20D1|148811|peptidase M20 domain containing 1##NM_152491|PM20D1|148811|peptidase M20 domain containing 1##AK124556|LOC100132966|100132966|uncharacterized LOC100132966##BC035696|FAM72A|729533|family with sequence similarity 72, member A##NM_001123168|FAM72A|729533|family with sequence similarity 72, member A##BC137545|FAM72A|729533|family with sequence similarity 72, member A##BC137546|FAM72B|653820|family with sequence similarity 72, member B##NM_000707|AVPR1B|553|arginine vasopressin receptor 1B##AF030512|AVPR1B|553|arginine vasopressin receptor 1B##AF101726|AVPR1B|553|arginine vasopressin receptor 1B##L37112|AVPR1B|553|arginine vasopressin receptor 1B##EU432111|AVPR1B|553|arginine vasopressin receptor 1B	0.990936	0.0	denovo_WM_7:19:0.330	denovo_WM_7:20:0.330	denovo_WM_7:21:0.330
chr12	51055147	51055289	reg1012813.p1	3.835	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-156319	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-156463	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-185631	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	102660	+	TSC_hg19_v1_chr12_+_51158275 AK299240	103040	+	NM_182559 BC035123 BC048112 CU690554	181505	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	0.0	0.0	
chr14	51206876	51207024	reg1004555.p2	3.835	+	TSC_hg19_v1_chr14_-_51135048 AK225896 AK095903	-71882	-	BC020537 TSC_hg19_v1_chr14_-_51135025 BC006385 NM_021818 AK021500	-71924	-	AJ292969 AK023071 TSC_hg19_v1_chr14_-_51135016 AK290883	-72010	-	AB046785 TSC_hg19_v1_chr14_-_51297860 BC065521 AF223937 AF223938 AF223939 AF302773 AY736182 NM_016350 NM_020921 NM_182944 NM_182946	90870	-	AY311396 AY311397 AY311398 AY311399 BC107141 NM_001206673 NM_181814 BC107142 AK128464	131928	+	AF046785 AF066858 TSC_hg19_v1_chr14_-_51411202 AK313206 Y15233 AK309333 BC065011 BC110791 BC009895 BC082229 AK225904 AK300580 BC095850 M14636 NM_001163940 NM_002863	204232	-	AK225896|SAV1|60485|salvador homolog 1 (Drosophila)##AK095903|SAV1|60485|salvador homolog 1 (Drosophila)##BC020537|SAV1|60485|salvador homolog 1 (Drosophila)##BC006385|SAV1|60485|salvador homolog 1 (Drosophila)##NM_021818|SAV1|60485|salvador homolog 1 (Drosophila)##AK021500|SAV1|60485|salvador homolog 1 (Drosophila)##AJ292969|SAV1|60485|salvador homolog 1 (Drosophila)##AK023071|SAV1|60485|salvador homolog 1 (Drosophila)##AK290883|SAV1|60485|salvador homolog 1 (Drosophila)##AB046785|NIN|51199|ninein (GSK3B interacting protein)##BC065521|NIN|51199|ninein (GSK3B interacting protein)##AF223937|NIN|51199|ninein (GSK3B interacting protein)##AF223938|NIN|51199|ninein (GSK3B interacting protein)##AF223939|NIN|51199|ninein (GSK3B interacting protein)##AF302773|NIN|51199|ninein (GSK3B interacting protein)##AY736182|NIN|51199|ninein (GSK3B interacting protein)##NM_016350|NIN|51199|ninein (GSK3B interacting protein)##NM_020921|NIN|51199|ninein (GSK3B interacting protein)##NM_182944|NIN|51199|ninein (GSK3B interacting protein)##NM_182946|NIN|51199|ninein (GSK3B interacting protein)##AY311396|ABHD12B|145447|abhydrolase domain containing 12B##AY311397|ABHD12B|145447|abhydrolase domain containing 12B##AY311398|ABHD12B|145447|abhydrolase domain containing 12B##AY311399|ABHD12B|145447|abhydrolase domain containing 12B##BC107141|ABHD12B|145447|abhydrolase domain containing 12B##NM_001206673|ABHD12B|145447|abhydrolase domain containing 12B##NM_181814|ABHD12B|145447|abhydrolase domain containing 12B##BC107142|ABHD12B|145447|abhydrolase domain containing 12B##AK128464|ABHD12B|145447|abhydrolase domain containing 12B##AF046785|PYGL|5836|phosphorylase, glycogen, liver##AF066858|PYGL|5836|phosphorylase, glycogen, liver##AK313206|PYGL|5836|phosphorylase, glycogen, liver##Y15233|PYGL|5836|phosphorylase, glycogen, liver##AK309333|PYGL|5836|phosphorylase, glycogen, liver##BC065011|PYGL|5836|phosphorylase, glycogen, liver##BC110791|PYGL|5836|phosphorylase, glycogen, liver##BC009895|PYGL|5836|phosphorylase, glycogen, liver##BC082229|PYGL|5836|phosphorylase, glycogen, liver##AK225904|PYGL|5836|phosphorylase, glycogen, liver##AK300580|PYGL|5836|phosphorylase, glycogen, liver##BC095850|PYGL|5836|phosphorylase, glycogen, liver##M14636|PYGL|5836|phosphorylase, glycogen, liver##NM_001163940|PYGL|5836|phosphorylase, glycogen, liver##NM_002863|PYGL|5836|phosphorylase, glycogen, liver	1.578517	0.0	denovo_WM_7:-32:0.792	denovo_WM_7:-100:0.326	denovo_WM_7:-101:0.437
chr3	170048813	170048882	reg1017285.p1	3.835	+	TSC_hg19_v1_chr3_+_169940250 L33881 AK315342 AB590674 AB451443	-108482	+	TSC_hg19_v1_chr3_+_169940223 BC022016	-108618	+	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	-108630	+	TSC_hg19_v1_chr3_+_170075455 NM_001145098 NM_005414	26622	+	TSC_hg19_v1_chr3_+_170075508 BC059386	26659	+	AK300053 TSC_hg19_v1_chr3_+_170075522 BC053554	26709	+	L33881|PRKCI|5584|protein kinase C, iota##AK315342|PRKCI|5584|protein kinase C, iota##AB451443|PRKCI|5584|protein kinase C, iota##BC022016|PRKCI|5584|protein kinase C, iota##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota##NM_001145098|SKIL|6498|SKI-like oncogene##NM_005414|SKIL|6498|SKI-like oncogene##BC059386|SKIL|6498|SKI-like oncogene##AK300053|SKIL|6498|SKI-like oncogene	0.997453	0.0	denovo_WM_7:-69:0.449	denovo_WM_7:-70:0.449
chr3	50310123	50310213	reg1012189.p1	3.835	+	TSC_hg19_v1_chr3_+_50306602 BC013975 BC024220 AF217991 AB083186 EU832609 EU832680	-3542	+	AB209322 TSC_hg19_v1_chr3_+_50306434 U28369	-3796	+	AK308875 NM_001005914 NM_004636 TSC_hg19_v1_chr3_+_50305047	-5149	+	BC028000 NM_153215 AK095927 EU832119 EU832213	6362	+	U09585 BT019999 EU832626 EU832699 CU675591 TSC_hg19_v1_chr3_-_50329861 AK309114 BC001676 AK074763 BC001327 BC007265 BC007437 NM_006764	19695	-	TSC_hg19_v1_chr3_-_50336292 AF040706 NM_001200029 NM_001200018	26123	-	BC013975|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##BC024220|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AF217991|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AB083186|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##EU832609|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##EU832680|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AB209322|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##U28369|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AK308875|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##NM_001005914|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##NM_004636|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##BC028000|C3orf45|132228|chromosome 3 open reading frame 45##NM_153215|C3orf45|132228|chromosome 3 open reading frame 45##AK095927|C3orf45|132228|chromosome 3 open reading frame 45##EU832119|C3orf45|132228|chromosome 3 open reading frame 45##EU832213|C3orf45|132228|chromosome 3 open reading frame 45##U09585|IFRD2|7866|interferon-related developmental regulator 2##BT019999|IFRD2|7866|interferon-related developmental regulator 2##EU832626|IFRD2|7866|interferon-related developmental regulator 2##EU832699|IFRD2|7866|interferon-related developmental regulator 2##AK309114|IFRD2|7866|interferon-related developmental regulator 2##BC001676|IFRD2|7866|interferon-related developmental regulator 2##AK074763|IFRD2|7866|interferon-related developmental regulator 2##BC001327|IFRD2|7866|interferon-related developmental regulator 2##BC007265|IFRD2|7866|interferon-related developmental regulator 2##BC007437|IFRD2|7866|interferon-related developmental regulator 2##NM_006764|IFRD2|7866|interferon-related developmental regulator 2##AF040706|NAT6|24142|N-acetyltransferase 6 (GCN5-related)##NM_001200029|HYAL3|8372|hyaluronoglucosaminidase 3##NM_001200018|NAT6|24142|N-acetyltransferase 6 (GCN5-related)	0.998499	0.0	denovo_WM_7:-17:0.457	denovo_WM_7:-18:0.457
chr5	81574220	81574376	reg1015644.p1	3.835	+	TSC_hg19_v1_chr5_-_81574219 NM_001025	-79	-	D14530 TSC_hg19_v1_chr5_-_81574174 AK291132 AK311772 D28396 BC070221	-127	-	TSC_hg19_v1_chr5_+_81268100 AL136912	-306200	+	BC093982 BC112191 NM_001017971	26867	+	BC026285 TSC_hg19_v1_chr5_-_82373172 BX647979 BC107575 BC070122 BC028585	798899	-	TSC_hg19_v1_chr5_-_82373255 NM_174909	798964	-	NM_001025|RPS23|6228|ribosomal protein S23##D14530|RPS23|6228|ribosomal protein S23##AK291132|RPS23|6228|ribosomal protein S23##AK311772|RPS23|6228|ribosomal protein S23##D28396|RPS23|6228|ribosomal protein S23##BC070221|RPS23|6228|ribosomal protein S23##AL136912|ATG10|83734|ATG10 autophagy related 10 homolog (S. cerevisiae)##BC093982|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC112191|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##NM_001017971|ATP6AP1L|92270|ATPase, H+ transporting, lysosomal accessory protein 1-like##BC026285|TMEM167A|153339|transmembrane protein 167A##BX647979|TMEM167A|153339|transmembrane protein 167A##BC107575|TMEM167A|153339|transmembrane protein 167A##BC070122|TMEM167A|153339|transmembrane protein 167A##BC028585|TMEM167A|153339|transmembrane protein 167A##NM_174909|TMEM167A|153339|transmembrane protein 167A	0.0	0.0	
chr18	20811405	20811540	reg1013117.p1	3.834	+	BC037218 NM_138375	-75684	+	EF028204 NM_001100619	-95746	+	TSC_hg19_v1_chr18_+_20513833 BC001170 NM_203291 NM_203292 AF043431 BX648221	-297657	+	AK303553 BC114510 BC114561 AK294916 TSC_hg19_v1_chr18_-_21017926 AK123623 AK126247 NM_032933	206399	-	AK057292 NM_003831	221314	+	TSC_hg19_v1_chr18_+_21033250 AK303938 BC028360	221774	+	BC037218|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_138375|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##EF028204|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##NM_001100619|CABLES1|91768|Cdk5 and Abl enzyme substrate 1##BC001170|RBBP8|5932|retinoblastoma binding protein 8##NM_203291|RBBP8|5932|retinoblastoma binding protein 8##NM_203292|RBBP8|5932|retinoblastoma binding protein 8##AF043431|RBBP8|5932|retinoblastoma binding protein 8##BX648221|RBBP8|5932|retinoblastoma binding protein 8##AK303553|TMEM241|85019|transmembrane protein 241##BC114510|TMEM241|85019|transmembrane protein 241##BC114561|TMEM241|85019|transmembrane protein 241##AK294916|TMEM241|85019|transmembrane protein 241##AK123623|TMEM241|85019|transmembrane protein 241##AK126247|TMEM241|85019|transmembrane protein 241##NM_032933|TMEM241|85019|transmembrane protein 241##AK057292|RIOK3|8780|RIO kinase 3 (yeast)##NM_003831|RIOK3|8780|RIO kinase 3 (yeast)##AK303938|RIOK3|8780|RIO kinase 3 (yeast)##BC028360|RIOK3|8780|RIO kinase 3 (yeast)	0.0	0.0	
chr18	34061512	34061594	reg1006441.p1	3.834	+	TSC_hg19_v1_chr18_+_33877676 AK128053 NM_025135 AB084087 HM191478	-183839	+	TSC_hg19_v1_chr18_+_33767481 NM_017947 AK000740 BC012079 AK222886 DQ895841 EU176372	-294077	+	TSC_hg19_v1_chr18_+_33709886 AK300201 BC032553 AK222791 AK001741 BC007098 AB590856 CU689420 CR457269	-351665	+	TSC_hg19_v1_chr18_-_34408744 AB463512 BC022199 AK000543	347210	-	TSC_hg19_v1_chr18_-_34408937 AK295817 BC015178	347341	-	AB073382 TSC_hg19_v1_chr18_-_34408948	347399	-	AK128053|FHOD3|80206|formin homology 2 domain containing 3##NM_025135|FHOD3|80206|formin homology 2 domain containing 3##AB084087|FHOD3|80206|formin homology 2 domain containing 3##HM191478|FHOD3|80206|formin homology 2 domain containing 3##NM_017947|MOCOS|55034|molybdenum cofactor sulfurase##AK000740|MOCOS|55034|molybdenum cofactor sulfurase##BC012079|MOCOS|55034|molybdenum cofactor sulfurase##AK222886|MOCOS|55034|molybdenum cofactor sulfurase##DQ895841|MOCOS|55034|molybdenum cofactor sulfurase##EU176372|MOCOS|55034|molybdenum cofactor sulfurase##AK300201|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC032553|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK222791|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##AK001741|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC007098|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##CR457269|ELP2|55250|elongation protein 2 homolog (S. cerevisiae)##BC022199|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK000543|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AK295817|TPGS2|25941|tubulin polyglutamylase complex subunit 2##BC015178|TPGS2|25941|tubulin polyglutamylase complex subunit 2##AB073382|TPGS2|25941|tubulin polyglutamylase complex subunit 2	0.0	0.0	
chr2	120518463	120518561	reg1012548.p2	3.834	+	M68941 NM_002830 TSC_hg19_v1_chr2_+_120517497 AK314836 BC010674	-1112	+	TSC_hg19_v1_chr2_+_120436776 AK057313 AK308503 AK311734	-81731	+	TSC_hg19_v1_chr2_+_120436745 AK130088 NM_001105198 NM_001105199 NM_030577 AK096890 AK299078 BC004404	-81778	+	TSC_hg19_v1_chr2_+_120770604 NM_001184937 NM_001184939 NM_020909	252091	+	TSC_hg19_v1_chr2_+_120770652 AK023019 BC054508 AK290895 BC032822 NM_001184938	252221	+	TSC_hg19_v1_chr2_-_120980957 BC016849 AK289880 BC080607 AK024632	462425	-	M68941|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##NM_002830|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK314836|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##BC010674|PTPN4|5775|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)##AK057313|LOC100125918|100125918|uncharacterized LOC100125918##AK308503|TMEM177|80775|transmembrane protein 177##AK130088|TMEM177|80775|transmembrane protein 177##NM_001105198|TMEM177|80775|transmembrane protein 177##NM_001105199|TMEM177|80775|transmembrane protein 177##NM_030577|TMEM177|80775|transmembrane protein 177##AK096890|TMEM177|80775|transmembrane protein 177##AK299078|TMEM177|80775|transmembrane protein 177##BC004404|TMEM177|80775|transmembrane protein 177##NM_001184937|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184939|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_020909|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK023019|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC054508|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##AK290895|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC032822|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##NM_001184938|EPB41L5|57669|erythrocyte membrane protein band 4.1 like 5##BC016849|TMEM185B|79134|transmembrane protein 185B##BC080607|TMEM185B|79134|transmembrane protein 185B##AK024632|TMEM185B|79134|transmembrane protein 185B	0.999544	0.0	
chr2	6450087	6450203	reg1015221.p1	3.834	+	U23752 AB028641 NM_003108 BC025789 AB464713	-617330	+	AK302299 NM_018436 BC029652	-2744348	+	AK313840 AB119525 AB119650 AB119651 AB119652 NM_024027 NM_199235 BC009951 TSC_hg19_v1_chr2_+_3642701 BC000078 AY358439	-2807576	+	TSC_hg19_v1_chr2_-_7005793 BC089425 BC141802 NM_207315 BC132821 BC144202 AK127983	555755	-	TSC_hg19_v1_chr2_-_7006650 AK308509	556558	-	NM_080657 AK312670 AF442151 BC017969 TSC_hg19_v1_chr2_+_7017907 DQ891977 DQ895168 CU676130	567718	+	U23752|SOX11|6664|SRY (sex determining region Y)-box 11##AB028641|SOX11|6664|SRY (sex determining region Y)-box 11##NM_003108|SOX11|6664|SRY (sex determining region Y)-box 11##BC025789|SOX11|6664|SRY (sex determining region Y)-box 11##AK302299|ALLC|55821|allantoicase##NM_018436|ALLC|55821|allantoicase##BC029652|ALLC|55821|allantoicase##AK313840|COLEC11|78989|collectin sub-family member 11##AB119525|COLEC11|78989|collectin sub-family member 11##AB119650|COLEC11|78989|collectin sub-family member 11##AB119651|COLEC11|78989|collectin sub-family member 11##AB119652|COLEC11|78989|collectin sub-family member 11##NM_024027|COLEC11|78989|collectin sub-family member 11##NM_199235|COLEC11|78989|collectin sub-family member 11##BC009951|COLEC11|78989|collectin sub-family member 11##BC000078|COLEC11|78989|collectin sub-family member 11##AY358439|COLEC11|78989|collectin sub-family member 11##BC089425|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC141802|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_207315|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC132821|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##BC144202|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK127983|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##AK308509|CMPK2|129607|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial##NM_080657|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AK312670|RSAD2|91543|radical S-adenosyl methionine domain containing 2##AF442151|RSAD2|91543|radical S-adenosyl methionine domain containing 2##BC017969|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ891977|RSAD2|91543|radical S-adenosyl methionine domain containing 2##DQ895168|RSAD2|91543|radical S-adenosyl methionine domain containing 2	0.935417	0.0	denovo_WM_7:-20:0.704
chr6	97497565	97497644	reg1015147.p1	3.834	+	NM_052904 AK055292 BC071627 TSC_hg19_v1_chr6_+_97372638 AK295479 AF351610 AK297240	-124981	+	TSC_hg19_v1_chr6_-_97345768 NM_014165	-151840	-	TSC_hg19_v1_chr6_-_97345751 BC018802 AF161474	-151852	-	AK128060 NM_198468 BC142948 TSC_hg19_v1_chr6_-_97731095 CR749822	233486	-	AK095588 NM_005604 TSC_hg19_v1_chr6_+_99282579	1784976	+	Z11933 TSC_hg19_v1_chr6_+_99282600 BC051699 AB385538	1785068	+	NM_052904|KLHL32|114792|kelch-like 32 (Drosophila)##AK055292|KLHL32|114792|kelch-like 32 (Drosophila)##BC071627|KLHL32|114792|kelch-like 32 (Drosophila)##AK295479|KLHL32|114792|kelch-like 32 (Drosophila)##AF351610|KLHL32|114792|kelch-like 32 (Drosophila)##AK297240|KLHL32|114792|kelch-like 32 (Drosophila)##NM_014165|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##BC018802|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AF161474|NDUFAF4|29078|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4##AK128060|MMS22L|253714|MMS22-like, DNA repair protein##NM_198468|MMS22L|253714|MMS22-like, DNA repair protein##BC142948|MMS22L|253714|MMS22-like, DNA repair protein##CR749822|MMS22L|253714|MMS22-like, DNA repair protein##AK095588|POU3F2|5454|POU class 3 homeobox 2##NM_005604|POU3F2|5454|POU class 3 homeobox 2##Z11933|POU3F2|5454|POU class 3 homeobox 2##BC051699|POU3F2|5454|POU class 3 homeobox 2	0.163774	0.0	
chr7	28369801	28369981	reg1005635.p1	3.834	+	L05913 NM_182899	-30952	+	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	-149485	-	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	-149690	-	TSC_hg19_v1_chr7_+_28448986 BC087859	79097	+	L05515 NM_182898	82252	+	L05911 NM_004904	105342	+	L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##BC087859|LOC401317|401317|uncharacterized LOC401317##L05515|CREB5|9586|cAMP responsive element binding protein 5##NM_182898|CREB5|9586|cAMP responsive element binding protein 5##L05911|CREB5|9586|cAMP responsive element binding protein 5##NM_004904|CREB5|9586|cAMP responsive element binding protein 5	0.0	0.0	
chr8	95294657	95294788	reg1016572.p1	3.834	+	TSC_hg19_v1_chr8_-_95274548 AK314017 BC022010 NM_005261 NM_181702	-20174	-	U10550 TSC_hg19_v1_chr8_-_95274525	-20200	-	AK312873 NM_001144663	-65192	-	AF007866 NM_001205263	154433	-	BC001965 AF112481 BC020668 AK290437 TSC_hg19_v1_chr8_-_95487344 NM_001205262 NM_012415	192597	-	AB037850 AF116724 HQ258534 TSC_hg19_v1_chr8_-_95565696 AL832487 BC112288 BC113380 NM_015496 NM_183009	270985	-	AK314017|GEM|2669|GTP binding protein overexpressed in skeletal muscle##BC022010|GEM|2669|GTP binding protein overexpressed in skeletal muscle##NM_005261|GEM|2669|GTP binding protein overexpressed in skeletal muscle##NM_181702|GEM|2669|GTP binding protein overexpressed in skeletal muscle##U10550|GEM|2669|GTP binding protein overexpressed in skeletal muscle##AK312873|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##NM_001144663|CDH17|1015|cadherin 17, LI cadherin (liver-intestine)##AF007866|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205263|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##BC001965|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AF112481|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##BC020668|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AK290437|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_001205262|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##NM_012415|RAD54B|25788|RAD54 homolog B (S. cerevisiae)##AB037850|KIAA1429|25962|KIAA1429##AF116724|KIAA1429|25962|KIAA1429##AL832487|KIAA1429|25962|KIAA1429##BC112288|KIAA1429|25962|KIAA1429##BC113380|KIAA1429|25962|KIAA1429##NM_015496|KIAA1429|25962|KIAA1429##NM_183009|KIAA1429|25962|KIAA1429	0.930994	0.0	denovo_WM_7:-88:0.366	denovo_WM_7:-91:0.304	denovo_WM_7:-92:0.261
chr1	235069289	235069469	reg1014845.p1	3.833	+	TSC_hg19_v1_chr1_-_234895746 AF193050	-173605	-	TSC_hg19_v1_chr1_-_234745245 BC065759 AY278023 AY278024 NM_001077397 NM_182972	-324133	-	TSC_hg19_v1_chr1_-_234743861 AK309579	-325521	-	CR456718 DQ891102 EU176557 TSC_hg19_v1_chr1_-_235292147 BC071994 D13641 BC107851 BC100286 BC066335 BC000882	222710	-	TSC_hg19_v1_chr1_-_235292229 AK289810 NM_014765	222852	-	TSC_hg19_v1_chr1_-_235324557 CU688656 AB587533 D38491 AK292362 BC029451 NM_001161533 NM_015014	255184	-	AF193050|PP2672|100130249|uncharacterized LOC100130249##BC065759|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278023|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##AY278024|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_001077397|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##NM_182972|IRF2BP2|359948|interferon regulatory factor 2 binding protein 2##CR456718|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##DQ891102|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##EU176557|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC071994|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D13641|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC107851|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC100286|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC066335|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##BC000882|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##AK289810|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##NM_014765|TOMM20|9804|translocase of outer mitochondrial membrane 20 homolog (yeast)##D38491|RBM34|23029|RNA binding motif protein 34##AK292362|RBM34|23029|RNA binding motif protein 34##BC029451|RBM34|23029|RNA binding motif protein 34##NM_001161533|RBM34|23029|RNA binding motif protein 34##NM_015014|RBM34|23029|RNA binding motif protein 34	0.0	0.0	
chr12	68844827	68844941	reg1013661.p1	3.833	+	TSC_hg19_v1_chr12_-_68726142 BC010622 AK297311 BC034945 BC022042 AF267851 BC028355 AK314461 NM_001205028 NM_001205029 NM_017440 NM_020128	-118778	-	CU686738 AB590805 BC066264 BC066263 BC066265 BC066266 BC067510 BC069308 BC067509 NM_020525 AF279437 AY358890 BC070261 AJ277247 BC069112	-197580	-	CU688126 CU688128 BC066270 BC066271 AJ251549 NM_018402	-225332	-	TSC_hg19_v1_chr12_+_69004678 NM_001010942 NM_001251917 NM_001251918 NM_001251921 NM_001251922 NM_015646	159762	+	TSC_hg19_v1_chr12_+_69004704 AK312371 BC078173 AK316447 AJ420497 AK298818 AK316543	159811	+	AK301401 AK301428 TSC_hg19_v1_chr12_+_69004708	159824	+	BC010622|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK297311|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC034945|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC022042|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AF267851|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC028355|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##AK314461|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205028|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_001205029|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_017440|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##NM_020128|MDM1|56890|Mdm1 nuclear protein homolog (mouse)##BC066264|IL22|50616|interleukin 22##BC066263|IL22|50616|interleukin 22##BC066265|IL22|50616|interleukin 22##BC066266|IL22|50616|interleukin 22##BC067510|IL22|50616|interleukin 22##BC069308|IL22|50616|interleukin 22##BC067509|IL22|50616|interleukin 22##NM_020525|IL22|50616|interleukin 22##AF279437|IL22|50616|interleukin 22##AY358890|IL22|50616|interleukin 22##BC070261|IL22|50616|interleukin 22##AJ277247|IL22|50616|interleukin 22##BC069112|IL22|50616|interleukin 22##BC066270|IL26|55801|interleukin 26##BC066271|IL26|55801|interleukin 26##AJ251549|IL26|55801|interleukin 26##NM_018402|IL26|55801|interleukin 26##NM_001010942|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251917|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251918|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251921|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_001251922|RAP1B|5908|RAP1B, member of RAS oncogene family##NM_015646|RAP1B|5908|RAP1B, member of RAS oncogene family##AK312371|RAP1B|5908|RAP1B, member of RAS oncogene family##BC078173|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316447|RAP1B|5908|RAP1B, member of RAS oncogene family##AJ420497|RAP1B|5908|RAP1B, member of RAS oncogene family##AK298818|RAP1B|5908|RAP1B, member of RAS oncogene family##AK316543|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301401|RAP1B|5908|RAP1B, member of RAS oncogene family##AK301428|RAP1B|5908|RAP1B, member of RAS oncogene family	0.993988	0.0	denovo_WM_7:-56:0.746
chr1	61543481	61543636	reg1013608.p1	3.833	+	TSC_hg19_v1_chr1_+_61542928 AK299289 NM_001145511	-622	+	AK092769 TSC_hg19_v1_chr1_+_61542908	-702	+	BC027878 AK124828 NM_152377	-1004125	-	TSC_hg19_v1_chr1_+_61547427 AK299579 NM_001145512	3902	+	TSC_hg19_v1_chr1_+_61548292 AB037860 NM_001134673 NM_005595 AK299356 BC022264 CU692518 DQ893250 DQ896579	4500	+	TSC_hg19_v1_chr1_+_61869699 AK024964	326165	+	AK299289|NFIA|4774|nuclear factor I/A##NM_001145511|NFIA|4774|nuclear factor I/A##BC027878|C1orf87|127795|chromosome 1 open reading frame 87##AK124828|C1orf87|127795|chromosome 1 open reading frame 87##NM_152377|C1orf87|127795|chromosome 1 open reading frame 87##AK299579|NFIA|4774|nuclear factor I/A##NM_001145512|NFIA|4774|nuclear factor I/A##AB037860|NFIA|4774|nuclear factor I/A##NM_001134673|NFIA|4774|nuclear factor I/A##NM_005595|NFIA|4774|nuclear factor I/A##AK299356|NFIA|4774|nuclear factor I/A##BC022264|NFIA|4774|nuclear factor I/A##DQ893250|NFIA|4774|nuclear factor I/A##DQ896579|NFIA|4774|nuclear factor I/A##AK024964|NFIA|4774|nuclear factor I/A	0.977104	0.0	denovo_WM_7:-25:0.202	denovo_WM_7:-26:0.522
chr5	179285039	179285173	reg1015918.p1	3.833	+	TSC_hg19_v1_chr5_+_179248089 AK025146	-37001	+	TSC_hg19_v1_chr5_+_179247911 BC003139 BC019111 U41806 AB528327 CU678396 DQ892878 EU176717	-37183	+	TSC_hg19_v1_chr5_+_179247904 AK293509 AK304877	-37203	+	BC050714 BC056889 CU686703 AK298954 TSC_hg19_v1_chr5_-_179285809 AK293901 BC069051 BX647375 AK295104 NM_001017987 NM_016175 AB528169 AM392546 AM393590 BX537968 CR936785	735	-	TSC_hg19_v1_chr5_+_179286046 BC040901	889	+	AB449893 TSC_hg19_v1_chr5_-_179334837 AB463306	49724	-	AK025146|SQSTM1|8878|sequestosome 1##BC003139|SQSTM1|8878|sequestosome 1##BC019111|SQSTM1|8878|sequestosome 1##U41806|SQSTM1|8878|sequestosome 1##DQ892878|SQSTM1|8878|sequestosome 1##EU176717|SQSTM1|8878|sequestosome 1##AK293509|SQSTM1|8878|sequestosome 1##AK304877|SQSTM1|8878|sequestosome 1##BC050714|C5orf45|51149|chromosome 5 open reading frame 45##BC056889|C5orf45|51149|chromosome 5 open reading frame 45##AK298954|C5orf45|51149|chromosome 5 open reading frame 45##AK293901|C5orf45|51149|chromosome 5 open reading frame 45##BC069051|C5orf45|51149|chromosome 5 open reading frame 45##BX647375|C5orf45|51149|chromosome 5 open reading frame 45##NM_001017987|C5orf45|51149|chromosome 5 open reading frame 45##NM_016175|C5orf45|51149|chromosome 5 open reading frame 45##AM392546|C5orf45|51149|chromosome 5 open reading frame 45##AM393590|C5orf45|51149|chromosome 5 open reading frame 45##BX537968|C5orf45|51149|chromosome 5 open reading frame 45##CR936785|C5orf45|51149|chromosome 5 open reading frame 45##AB449893|TBC1D9B|23061|TBC1 domain family, member 9B (with GRAM domain)	0.99674	0.0	denovo_WM_7:-85:0.449	denovo_WM_7:-86:0.449
chr6	74180649	74180715	reg1007768.p1	3.833	+	AL833823 TSC_hg19_v1_chr6_+_74171681	-9026	+	NM_001123226 NM_012123 NM_133645 TSC_hg19_v1_chr6_+_74171505 AK225828 AK074625 AF319422 AF469110 AF469111 AY078985 AY078986 BC005808 BC011051 AJ420530 AF132937	-9175	+	TSC_hg19_v1_chr6_-_74162038 NM_138441	-18624	-	AK222519 BC020477 DQ867534 AF328730 AF397403 TSC_hg19_v1_chr6_-_74229235	48487	-	TSC_hg19_v1_chr6_-_74230163 AY043301	49488	-	BC012891 BC010735 BC071619 BC082268 BC071741 BC008587 BC018150 BC018641 BC019669 BC029997 BC038339 BC072385 BC014224 BC018850 BC009875 BC035877 BC111051 X03558 AK315827 TSC_hg19_v1_chr6_-_74230757 AK223030 AK024888 AK222551 AK223046 AK297878 AK300922 BC021686 BC070131 AK026650 AK055058 AK058051 AK058082 AK098510 AK098518 AK098623 AK127384 AK222515 AK222523 AK222982 AK289374 AK289442 AK290691 AK304214 BC028674 BC066893 BC066894 BC070500 D28375 NM_001402	50064	-	AL833823|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_001123226|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_012123|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_133645|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK225828|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AK074625|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF319422|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469110|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF469111|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078985|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AY078986|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC005808|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##BC011051|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AJ420530|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##AF132937|MTO1|25821|mitochondrial translation optimization 1 homolog (S. cerevisiae)##NM_138441|MB21D1|115004|Mab-21 domain containing 1##AK222519|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC020477|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##DQ867534|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF328730|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AF397403|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AY043301|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC012891|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC010735|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071619|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC082268|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC071741|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC008587|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018150|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018641|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC019669|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC029997|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC038339|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC072385|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC014224|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC018850|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC009875|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC035877|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC111051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##X03558|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK315827|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223030|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK024888|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222551|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK223046|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK297878|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK300922|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC021686|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070131|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK026650|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK055058|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058051|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK058082|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098510|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098518|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK098623|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK127384|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222515|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222523|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK222982|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289374|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK289442|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK290691|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##AK304214|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC028674|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066893|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC066894|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##BC070500|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1##NM_001402|EEF1A1|1915|eukaryotic translation elongation factor 1 alpha 1	0.967349	0.0	denovo_WM_7:3:0.830
chr12	95619679	95619859	reg1018781.p1	3.832	+	TSC_hg19_v1_chr12_+_95611582 NM_017599 AK001338 AK225303 AK309943 AK225356 BC014443 AK307864 AL137497 BC064939 BC028597	-8075	+	TSC_hg19_v1_chr12_-_95611206 BC125225 BC125226 BX538322 AK124904 NM_018351	-8533	-	TSC_hg19_v1_chr12_-_95467392 M29960 M21985 M29959 BC026074 BC040141 AK291319 NM_001032287 NM_001127362 NM_003297	-152471	-	TSC_hg19_v1_chr12_+_95676175 AL133113	56449	+	NM_006838 AK300836 TSC_hg19_v1_chr12_+_95867927 AK315559 U13261 AK055692 U29607 BC013782 AK091730 AX747149 AB463882 DQ891013 DQ894193	248128	+	AK027434 TSC_hg19_v1_chr12_-_95942575 BC030704 NM_001042403	322845	-	NM_017599|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK001338|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225303|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK309943|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK225356|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC014443|VEZT|55591|vezatin, adherens junctions transmembrane protein##AK307864|VEZT|55591|vezatin, adherens junctions transmembrane protein##AL137497|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC064939|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC028597|VEZT|55591|vezatin, adherens junctions transmembrane protein##BC125225|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BC125226|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##BX538322|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##AK124904|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##NM_018351|FGD6|55785|FYVE, RhoGEF and PH domain containing 6##M29960|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M21985|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##M29959|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC026074|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##BC040141|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AK291319|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001032287|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_001127362|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##NM_003297|NR2C1|7181|nuclear receptor subfamily 2, group C, member 1##AL133113|VEZT|55591|vezatin, adherens junctions transmembrane protein##NM_006838|METAP2|10988|methionyl aminopeptidase 2##AK300836|METAP2|10988|methionyl aminopeptidase 2##AK315559|METAP2|10988|methionyl aminopeptidase 2##U13261|METAP2|10988|methionyl aminopeptidase 2##AK055692|METAP2|10988|methionyl aminopeptidase 2##BC013782|METAP2|10988|methionyl aminopeptidase 2##AK091730|METAP2|10988|methionyl aminopeptidase 2##DQ891013|METAP2|10988|methionyl aminopeptidase 2##DQ894193|METAP2|10988|methionyl aminopeptidase 2##AK027434|USP44|84101|ubiquitin specific peptidase 44##BC030704|USP44|84101|ubiquitin specific peptidase 44##NM_001042403|USP44|84101|ubiquitin specific peptidase 44	0.0	0.0	
chr19	44022945	44023069	reg1008522.p1	3.832	+	BC029299 NM_198850 BC070094	-13972	-	CU691666 AY359006 BC041061 BC039167 AJ223603 AK075464 AK290905 AK314773 AF082889 NM_014400	-53231	-	NM_001130011 AY014285 AY359077	-103957	+	TSC_hg19_v1_chr19_-_44031351 AM392804 AB463613 AK309880 BC008250 AK315346 D83198 NM_014297	8354	-	TSC_hg19_v1_chr19_+_44037567 BC043611 NM_174945 AK301820	14505	+	CR456728 AB384718 BC023593 TSC_hg19_v1_chr19_-_44079680 AB208781	56641	-	BC029299|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##NM_198850|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##BC070094|PHLDB3|653583|pleckstrin homology-like domain, family B, member 3##AY359006|LYPD3|27076|LY6/PLAUR domain containing 3##BC041061|LYPD3|27076|LY6/PLAUR domain containing 3##BC039167|LYPD3|27076|LY6/PLAUR domain containing 3##AJ223603|LYPD3|27076|LY6/PLAUR domain containing 3##AK075464|LYPD3|27076|LY6/PLAUR domain containing 3##AK290905|LYPD3|27076|LY6/PLAUR domain containing 3##AK314773|LYPD3|27076|LY6/PLAUR domain containing 3##AF082889|LYPD3|27076|LY6/PLAUR domain containing 3##NM_014400|LYPD3|27076|LY6/PLAUR domain containing 3##NM_001130011|TEX101|83639|testis expressed 101##AY014285|TEX101|83639|testis expressed 101##AY359077|TEX101|83639|testis expressed 101##AM392804|ETHE1|23474|ethylmalonic encephalopathy 1##AK309880|ETHE1|23474|ethylmalonic encephalopathy 1##BC008250|ETHE1|23474|ethylmalonic encephalopathy 1##AK315346|ETHE1|23474|ethylmalonic encephalopathy 1##D83198|ETHE1|23474|ethylmalonic encephalopathy 1##NM_014297|ETHE1|23474|ethylmalonic encephalopathy 1##BC043611|ZNF575|284346|zinc finger protein 575##NM_174945|ZNF575|284346|zinc finger protein 575##AK301820|ZNF575|284346|zinc finger protein 575##CR456728|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##BC023593|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1##AB208781|XRCC1|7515|X-ray repair complementing defective repair in Chinese hamster cells 1	0.999607	0.0	
chr20	10471665	10471769	reg1011867.p2	3.832	+	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-55741	+	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	-56878	-	AF221993 NM_018848	-59148	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	182487	-	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	182852	-	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	1399732	+	BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3	0.104102	0.0	
chr3	182896816	182896887	reg1012030.p2	3.832	+	TSC_hg19_v1_chr3_-_182880523 AB013924 AK313172 BC032940 NM_014398	-16287	-	TSC_hg19_v1_chr3_-_182880435 DQ892118	-16412	-	BC036395 TSC_hg19_v1_chr3_-_182833987	-62928	-	TSC_hg19_v1_chr3_+_182970969 NM_032047 AK074424	74097	+	AB209517 TSC_hg19_v1_chr3_+_182971343	74427	+	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	74755	+	AB013924|LAMP3|27074|lysosomal-associated membrane protein 3##AK313172|LAMP3|27074|lysosomal-associated membrane protein 3##BC032940|LAMP3|27074|lysosomal-associated membrane protein 3##NM_014398|LAMP3|27074|lysosomal-associated membrane protein 3##DQ892118|LAMP3|27074|lysosomal-associated membrane protein 3##BC036395|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##NM_032047|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK074424|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AB209517|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	0.0	0.086436	
chr3	58518595	58518723	reg1015594.p1	3.832	+	AK074934 NM_153331	-34568	+	TSC_hg19_v1_chr3_+_58477822 NM_001128214 AK075297	-40821	+	M34056 M19123 BC004115 AB528205 AM392999 AM393278 CR541911 CU674222 DQ891366 DQ894546 M34479 M34055 M54788 AB209241 AL117618 AK293153 BC000439 BC001924 TSC_hg19_v1_chr3_-_58419557 AK225569 AK311514 AK313022 J03576 X57778 AK225621 NM_000925 NM_001173468	-99177	-	AK298402 AK313512 BC033517 BC047700 TSC_hg19_v1_chr3_-_58522918 NM_003500	4241	-	AB023811 TSC_hg19_v1_chr3_-_58563116 BC010561 AL050264 AK055443 AK128791 BC093012	44450	-	AF035283 NM_001076778 NM_007177	44831	-	AK074934|KCTD6|200845|potassium channel tetramerisation domain containing 6##NM_153331|KCTD6|200845|potassium channel tetramerisation domain containing 6##NM_001128214|KCTD6|200845|potassium channel tetramerisation domain containing 6##AK075297|KCTD6|200845|potassium channel tetramerisation domain containing 6##M34056|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M19123|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC004115|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AM392999|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AM393278|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##CR541911|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##DQ891366|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##DQ894546|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M34479|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M34055|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##M54788|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AB209241|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AL117618|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK293153|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC000439|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##BC001924|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK225569|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK311514|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK313022|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##J03576|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##X57778|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK225621|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_000925|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##NM_001173468|PDHB|5162|pyruvate dehydrogenase (lipoamide) beta##AK298402|ACOX2|8309|acyl-CoA oxidase 2, branched chain##AK313512|ACOX2|8309|acyl-CoA oxidase 2, branched chain##BC033517|ACOX2|8309|acyl-CoA oxidase 2, branched chain##BC047700|ACOX2|8309|acyl-CoA oxidase 2, branched chain##NM_003500|ACOX2|8309|acyl-CoA oxidase 2, branched chain##AB023811|FAM107A|11170|family with sequence similarity 107, member A##BC010561|FAM107A|11170|family with sequence similarity 107, member A##AL050264|FAM107A|11170|family with sequence similarity 107, member A##AK055443|FAM107A|11170|family with sequence similarity 107, member A##AK128791|FAM107A|11170|family with sequence similarity 107, member A##BC093012|FAM107A|11170|family with sequence similarity 107, member A##AF035283|FAM107A|11170|family with sequence similarity 107, member A##NM_001076778|FAM107A|11170|family with sequence similarity 107, member A##NM_007177|FAM107A|11170|family with sequence similarity 107, member A	0.0	0.999431	CTCF.p2:2:0.999
chr4	57253037	57253115	reg1013189.p1	3.832	+	AK126014 NM_020722	-216716	+	AK023683 NM_025009 TSC_hg19_v1_chr4_+_56815093 BC136535 BC136536	-437985	+	TSC_hg19_v1_chr4_+_56719840 BC094751 NM_001024924 NM_018261 NM_178237 AK001755 AK027413	-533211	+	AF516672 AY422212 BC142709 TSC_hg19_v1_chr4_-_57253644 AF161436 AK303733 BC141824 AK294332 AY314787 BC015096 NM_181806 AK316296 AK304309 BX648853	551	-	AB590152 CU678610 DQ893484 DQ896410 TSC_hg19_v1_chr4_-_57301775 AK290942 BC004200 U00238 AK222759 D13757 AK312297 NM_002703	48680	-	TSC_hg19_v1_chr4_+_57301910 NM_006452 AK294821 BC010273	48843	+	AK126014|KIAA1211|57482|KIAA1211##NM_020722|KIAA1211|57482|KIAA1211##AK023683|CEP135|9662|centrosomal protein 135kDa##NM_025009|CEP135|9662|centrosomal protein 135kDa##BC136535|CEP135|9662|centrosomal protein 135kDa##BC136536|CEP135|9662|centrosomal protein 135kDa##BC094751|EXOC1|55763|exocyst complex component 1##NM_001024924|EXOC1|55763|exocyst complex component 1##NM_018261|EXOC1|55763|exocyst complex component 1##NM_178237|EXOC1|55763|exocyst complex component 1##AK001755|EXOC1|55763|exocyst complex component 1##AK027413|EXOC1|55763|exocyst complex component 1##AF516672|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY422212|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC142709|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AF161436|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK303733|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC141824|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK294332|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AY314787|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BC015096|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##NM_181806|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK316296|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##AK304309|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##BX648853|AASDH|132949|aminoadipate-semialdehyde dehydrogenase##DQ893484|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##DQ896410|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK290942|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##BC004200|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##U00238|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK222759|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##D13757|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##AK312297|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_002703|PPAT|5471|phosphoribosyl pyrophosphate amidotransferase##NM_006452|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##AK294821|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase##BC010273|PAICS|10606|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase	0.0	0.0	
chr4	83288160	83288277	reg1012899.p1	3.832	+	TSC_hg19_v1_chr4_-_82393062 AK291459 BC036784 AK303625 AK056257 NM_152545	-895158	-	TSC_hg19_v1_chr4_-_82392993 BX648337 BC121003 BC121004	-895235	-	AB528214 D70899 NM_006259 X94612	-1162011	-	D55671 TSC_hg19_v1_chr4_-_83294725	6457	-	AF039575 X03910 AB463729 DQ892240 DQ895440 BC002401 TSC_hg19_v1_chr4_-_83294907	6654	-	TSC_hg19_v1_chr4_-_83295122 D55674 AK057836 D55672 BC023977 BC026015	6862	-	AK291459|RASGEF1B|153020|RasGEF domain family, member 1B##BC036784|RASGEF1B|153020|RasGEF domain family, member 1B##AK303625|RASGEF1B|153020|RasGEF domain family, member 1B##AK056257|RASGEF1B|153020|RasGEF domain family, member 1B##NM_152545|RASGEF1B|153020|RasGEF domain family, member 1B##BX648337|RASGEF1B|153020|RasGEF domain family, member 1B##BC121003|RASGEF1B|153020|RasGEF domain family, member 1B##BC121004|RASGEF1B|153020|RasGEF domain family, member 1B##D70899|PRKG2|5593|protein kinase, cGMP-dependent, type II##NM_006259|PRKG2|5593|protein kinase, cGMP-dependent, type II##X94612|PRKG2|5593|protein kinase, cGMP-dependent, type II##D55671|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AF039575|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##X03910|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ892240|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##DQ895440|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC002401|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55674|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##AK057836|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##D55672|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC023977|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)##BC026015|HNRNPD|3184|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)	0.998892	0.0	
chr5	124076811	124076938	reg1001088.p1	3.832	+	NM_001031812 NM_001044722 NM_001044723 NM_004384 TSC_hg19_v1_chr5_+_122847953 AK299739 AK316019	-1228992	+	TSC_hg19_v1_chr5_-_122759046 BC040527 BC144558 AK296999 AK095646 NM_001166226 NM_153223	-1317730	-	NM_001136239 AK297992 AF272898 AF272899	-1652030	+	BC131507 AB033107 BC151226 NM_020747	3914	-	NM_001146319 AK316288 AK300154	1618940	+	TSC_hg19_v1_chr5_+_125758822 NM_001146320 NM_001146321 NM_023927	1681969	+	NM_001031812|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044722|CSNK1G3|1456|casein kinase 1, gamma 3##NM_001044723|CSNK1G3|1456|casein kinase 1, gamma 3##NM_004384|CSNK1G3|1456|casein kinase 1, gamma 3##AK299739|CSNK1G3|1456|casein kinase 1, gamma 3##AK316019|CSNK1G3|1456|casein kinase 1, gamma 3##BC040527|CEP120|153241|centrosomal protein 120kDa##BC144558|CEP120|153241|centrosomal protein 120kDa##AK296999|CEP120|153241|centrosomal protein 120kDa##AK095646|CEP120|153241|centrosomal protein 120kDa##NM_001166226|CEP120|153241|centrosomal protein 120kDa##NM_153223|CEP120|153241|centrosomal protein 120kDa##NM_001136239|PRDM6|93166|PR domain containing 6##AK297992|PRDM6|93166|PR domain containing 6##AF272898|PRDM6|93166|PR domain containing 6##AF272899|PRDM6|93166|PR domain containing 6##BC131507|ZNF608|57507|zinc finger protein 608##AB033107|ZNF608|57507|zinc finger protein 608##BC151226|ZNF608|57507|zinc finger protein 608##NM_020747|ZNF608|57507|zinc finger protein 608##NM_001146319|GRAMD3|65983|GRAM domain containing 3##AK316288|GRAMD3|65983|GRAM domain containing 3##AK300154|GRAMD3|65983|GRAM domain containing 3##NM_001146320|GRAMD3|65983|GRAM domain containing 3##NM_001146321|GRAMD3|65983|GRAM domain containing 3##NM_023927|GRAMD3|65983|GRAM domain containing 3	0.0	0.0	
chr9	92480085	92480151	reg1014828.p1	3.832	+	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	-260137	+	BX648216 TSC_hg19_v1_chr9_-_92113005	-367111	-	BC054500 NM_001142287 NM_006378	-385508	-	BC008065 TSC_hg19_v1_chr9_-_93405107 AK124628 AK122986 NM_017594	925001	-	AK075020 NM_001135052 NM_003177 TSC_hg19_v1_chr9_+_93564062	1083918	+	TSC_hg19_v1_chr9_+_93564068 Z29630 BC001645 BC002962	1083949	+	NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BC008065|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK124628|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK122986|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##NM_017594|DIRAS2|54769|DIRAS family, GTP-binding RAS-like 2##AK075020|SYK|6850|spleen tyrosine kinase##NM_001135052|SYK|6850|spleen tyrosine kinase##NM_003177|SYK|6850|spleen tyrosine kinase##Z29630|SYK|6850|spleen tyrosine kinase##BC001645|SYK|6850|spleen tyrosine kinase##BC002962|SYK|6850|spleen tyrosine kinase	0.999655	0.0	denovo_WM_7:52:0.298	denovo_WM_7:53:0.298	denovo_WM_7:54:0.298
chrX	117765778	117765910	reg1001387.p2	3.832	+	AY692226 NM_144658 TSC_hg19_v1_chrX_+_117629874	-135972	+	TSC_hg19_v1_chrX_+_117526665 AL834210	-239157	+	TSC_hg19_v1_chrX_+_117480490 AM393332 AM393787 EU831942 EU832037 AK304432	-285382	+	TSC_hg19_v1_chrX_+_117861562 BC015768 NM_001560 Y10659 U81379 U81380 AK313467 Y09328 BC009960 AB528371 DQ893454 DQ896296 AB209849	95723	+	TSC_hg19_v1_chrX_+_117957786 AK122676 BC036572 BC031241 BC057841 NM_173798 BC018066	191978	+	TSC_hg19_v1_chrX_+_118108580 AK091777 AK290198 AX747177	342736	+	AY692226|DOCK11|139818|dedicator of cytokinesis 11##NM_144658|DOCK11|139818|dedicator of cytokinesis 11##AL834210|WDR44|54521|WD repeat domain 44##AM393332|WDR44|54521|WD repeat domain 44##AM393787|WDR44|54521|WD repeat domain 44##EU831942|WDR44|54521|WD repeat domain 44##EU832037|WDR44|54521|WD repeat domain 44##AK304432|WDR44|54521|WD repeat domain 44##BC015768|IL13RA1|3597|interleukin 13 receptor, alpha 1##NM_001560|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y10659|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81379|IL13RA1|3597|interleukin 13 receptor, alpha 1##U81380|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK313467|IL13RA1|3597|interleukin 13 receptor, alpha 1##Y09328|IL13RA1|3597|interleukin 13 receptor, alpha 1##BC009960|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ893454|IL13RA1|3597|interleukin 13 receptor, alpha 1##DQ896296|IL13RA1|3597|interleukin 13 receptor, alpha 1##AB209849|IL13RA1|3597|interleukin 13 receptor, alpha 1##AK122676|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC036572|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC031241|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC057841|ZCCHC12|170261|zinc finger, CCHC domain containing 12##NM_173798|ZCCHC12|170261|zinc finger, CCHC domain containing 12##BC018066|ZCCHC12|170261|zinc finger, CCHC domain containing 12##AK091777|LONRF3|79836|LON peptidase N-terminal domain and ring finger 3##AK290198|LONRF3|79836|LON peptidase N-terminal domain and ring finger 3	0.0	0.0	
chr16	33944628	33944777	reg1018874.p2	3.831	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-682569	+	AL133588 NM_016212	-683188	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-739104	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	12710570	-	TSC_hg19_v1_chr16_-_46655304 NM_024745	12710604	-	BC041367 BC010362 AK223218 AF191298 TSC_hg19_v1_chr16_-_46723091 AK001614 AF175265 AF186382 BC093036 AL136888	12778360	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1##NM_024745|SHCBP1|79801|SHC SH2-domain binding protein 1##BC041367|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC010362|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK223218|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF191298|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AK001614|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF175265|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AF186382|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##BC093036|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)##AL136888|VPS35|55737|vacuolar protein sorting 35 homolog (S. cerevisiae)	0.0	0.0	
chr19	14607769	14607879	reg1013802.p1	3.831	+	TSC_hg19_v1_chr19_-_14606940 NM_005716 NM_202467 NM_202468 NM_202469 NM_202470 NM_202494	-881	-	TSC_hg19_v1_chr19_-_14606928 AF089816 AK290252 AK290948 BC000410 BC012810 BC016169	-909	-	TSC_hg19_v1_chr19_-_14586167 BC051286 NM_000955	-21656	-	CR536485 CR541677 AB463573 CU676466 BC019827 BC002352 BC013157 D49547 NM_006145 TSC_hg19_v1_chr19_-_14629210 X62421	21369	-	TSC_hg19_v1_chr19_-_14629233 AK312624	21406	-	AK296609 TSC_hg19_v1_chr19_-_14629237	21466	-	NM_005716|GIPC1|10755|GIPC PDZ domain containing family, member 1##NM_202467|GIPC1|10755|GIPC PDZ domain containing family, member 1##NM_202468|GIPC1|10755|GIPC PDZ domain containing family, member 1##NM_202469|GIPC1|10755|GIPC PDZ domain containing family, member 1##NM_202470|GIPC1|10755|GIPC PDZ domain containing family, member 1##NM_202494|GIPC1|10755|GIPC PDZ domain containing family, member 1##AF089816|GIPC1|10755|GIPC PDZ domain containing family, member 1##AK290252|GIPC1|10755|GIPC PDZ domain containing family, member 1##AK290948|GIPC1|10755|GIPC PDZ domain containing family, member 1##BC000410|GIPC1|10755|GIPC PDZ domain containing family, member 1##BC012810|GIPC1|10755|GIPC PDZ domain containing family, member 1##BC016169|GIPC1|10755|GIPC PDZ domain containing family, member 1##BC051286|PTGER1|5731|prostaglandin E receptor 1 (subtype EP1), 42kDa##NM_000955|PTGER1|5731|prostaglandin E receptor 1 (subtype EP1), 42kDa##CR536485|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##CR541677|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##BC019827|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##BC002352|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##BC013157|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##D49547|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##NM_006145|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##X62421|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1##AK312624|DNAJB1|3337|DnaJ (Hsp40) homolog, subfamily B, member 1	0.0	0.0	
chr1	9377834	9377929	reg1015416.p1	3.831	+	TSC_hg19_v1_chr1_+_9352956 AB209559 BC015711	-24912	+	TSC_hg19_v1_chr1_+_9352934 AK026046 AK225417 NM_025106	-24944	+	CR749282 TSC_hg19_v1_chr1_+_9299950	-77943	+	TSC_hg19_v1_chr1_+_9415945 CU677397	38065	+	TSC_hg19_v1_chr1_+_9599545 NM_032315 AJ880283 BC073135	221651	+	TSC_hg19_v1_chr1_+_9599547 BC004991 AF495714	221755	+	AB209559|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##BC015711|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK026046|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##AK225417|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##NM_025106|SPSB1|80176|splA/ryanodine receptor domain and SOCS box containing 1##CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_032315|SLC25A33|84275|solute carrier family 25, member 33##AJ880283|SLC25A33|84275|solute carrier family 25, member 33##BC073135|SLC25A33|84275|solute carrier family 25, member 33##BC004991|SLC25A33|84275|solute carrier family 25, member 33##AF495714|SLC25A33|84275|solute carrier family 25, member 33	0.99503	0.0	
chr19	8253217	8253353	reg1013040.p2	3.831	+	AB384635 AB053450 BC153882 NM_032447	-40910	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-135338	+	AK292662 NM_001201359 NM_005624	-135640	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	20963	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	119924	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	132972	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	1.18625	0.0	denovo_WM_7:51:0.205
chr19	9786110	9786290	reg1014727.p2	3.831	+	TSC_hg19_v1_chr19_-_9785777 AK300115 AK297446 AK303038 AK304370 NM_001130031 NM_001130032 NM_017656	-432	-	TSC_hg19_v1_chr19_-_9785743 AK000086	-470	-	TSC_hg19_v1_chr19_+_9732192 NM_001242812 BC036632 AK097685 BC143540	-54024	+	AK296815 NM_001199814	25271	-	BC037359 TSC_hg19_v1_chr19_-_9879296 AK308938 AK289536 AK097652 NM_001077624	93125	-	CU674772 TSC_hg19_v1_chr19_-_9929496	143292	-	AK300115|ZNF562|54811|zinc finger protein 562##AK297446|ZNF562|54811|zinc finger protein 562##AK303038|ZNF562|54811|zinc finger protein 562##AK304370|ZNF562|54811|zinc finger protein 562##NM_001130031|ZNF562|54811|zinc finger protein 562##NM_001130032|ZNF562|54811|zinc finger protein 562##NM_017656|ZNF562|54811|zinc finger protein 562##AK000086|ZNF562|54811|zinc finger protein 562##NM_001242812|LOC284385|284385|uncharacterized LOC284385##AK097685|LOC284385|284385|uncharacterized LOC284385##BC143540|LOC284385|284385|uncharacterized LOC284385##AK296815|ZNF812|729648|zinc finger protein 812##NM_001199814|ZNF812|729648|zinc finger protein 812##BC037359|ZNF846|162993|zinc finger protein 846##AK308938|ZNF846|162993|zinc finger protein 846##AK097652|ZNF846|162993|zinc finger protein 846##NM_001077624|ZNF846|162993|zinc finger protein 846	1.970105	0.0	denovo_WM_7:34:0.859
chr2	154463320	154463455	reg1013273.p1	3.831	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-128136	-	BC070140 TSC_hg19_v1_chr2_+_153575135 AF530059	-888243	+	BC028741 TSC_hg19_v1_chr2_+_153575133	-888256	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	265057	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	1091802	+	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	2723303	-	AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC070140|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##AF530059|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##BC028741|ARL6IP6|151188|ADP-ribosylation-like factor 6 interacting protein 6##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2	0.99591	0.0	denovo_WM_7:0:0.324	denovo_WM_7:0:0.324	denovo_WM_7:-1:0.324
chr2	99266011	99266109	reg1011850.p1	3.831	+	TSC_hg19_v1_chr2_+_99225088 AF077038	-40968	+	TSC_hg19_v1_chr2_+_99225075 BC039078 AY017215 AK222599	-40990	+	AL080115 BC025992 NM_014044 TSC_hg19_v1_chr2_+_99225051 BC091481	-41010	+	AK304393 AK309852 NM_001160154	13875	-	TSC_hg19_v1_chr2_-_99347557 AK314024	81436	-	NM_012214 TSC_hg19_v1_chr2_-_99347596	81553	-	AF077038|UNC50|25972|unc-50 homolog (C. elegans)##BC039078|UNC50|25972|unc-50 homolog (C. elegans)##AY017215|UNC50|25972|unc-50 homolog (C. elegans)##AK222599|UNC50|25972|unc-50 homolog (C. elegans)##AL080115|UNC50|25972|unc-50 homolog (C. elegans)##BC025992|UNC50|25972|unc-50 homolog (C. elegans)##NM_014044|UNC50|25972|unc-50 homolog (C. elegans)##BC091481|UNC50|25972|unc-50 homolog (C. elegans)##AK304393|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK309852|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##NM_001160154|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##AK314024|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A##NM_012214|MGAT4A|11320|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	0.0	0.0	
chr3	119386456	119386595	reg1012028.p2	3.831	+	CU692240 AF204173 NM_022135 AK314819 BC044929	-7173	-	NM_001206960 NM_001206961 NM_015900 AK301880 AK222705 AK313519 BC035347 BC047703 U37591 AF035268 AF035269 AB527604 CU690470	-69798	+	BC063883 NM_001125 TSC_hg19_v1_chr3_+_119298606	-87960	+	TSC_hg19_v1_chr3_-_119396232 AK312143 BC105280 BC010933 L77701 NM_005694 BC108317	9721	-	TSC_hg19_v1_chr3_+_119421876 AF440403 BC035248 CR749242 NM_033364 AF497717 AK055558 BC126394 AK302699 AK309317 AK294413 AK303997 AK289914 HQ258654	35377	+	AJ009936 AJ009937 NM_003889 NM_033013	112805	+	AF204173|POPDC2|64091|popeye domain containing 2##NM_022135|POPDC2|64091|popeye domain containing 2##AK314819|POPDC2|64091|popeye domain containing 2##BC044929|POPDC2|64091|popeye domain containing 2##NM_001206960|PLA1A|51365|phospholipase A1 member A##NM_001206961|PLA1A|51365|phospholipase A1 member A##NM_015900|PLA1A|51365|phospholipase A1 member A##AK301880|PLA1A|51365|phospholipase A1 member A##AK222705|PLA1A|51365|phospholipase A1 member A##AK313519|PLA1A|51365|phospholipase A1 member A##BC035347|PLA1A|51365|phospholipase A1 member A##BC047703|PLA1A|51365|phospholipase A1 member A##U37591|PLA1A|51365|phospholipase A1 member A##AF035268|PLA1A|51365|phospholipase A1 member A##AF035269|PLA1A|51365|phospholipase A1 member A##BC063883|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001125|ADPRH|141|ADP-ribosylarginine hydrolase##AK312143|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC105280|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC010933|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##L77701|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_005694|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC108317|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##AF440403|C3orf15|89876|chromosome 3 open reading frame 15##BC035248|C3orf15|89876|chromosome 3 open reading frame 15##CR749242|C3orf15|89876|chromosome 3 open reading frame 15##NM_033364|C3orf15|89876|chromosome 3 open reading frame 15##AF497717|C3orf15|89876|chromosome 3 open reading frame 15##AK055558|C3orf15|89876|chromosome 3 open reading frame 15##BC126394|C3orf15|89876|chromosome 3 open reading frame 15##AK302699|C3orf15|89876|chromosome 3 open reading frame 15##AK309317|C3orf15|89876|chromosome 3 open reading frame 15##AK294413|C3orf15|89876|chromosome 3 open reading frame 15##AK303997|C3orf15|89876|chromosome 3 open reading frame 15##AK289914|C3orf15|89876|chromosome 3 open reading frame 15##HQ258654|C3orf15|89876|chromosome 3 open reading frame 15##AJ009936|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##AJ009937|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##NM_003889|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2##NM_033013|NR1I2|8856|nuclear receptor subfamily 1, group I, member 2	0.990404	0.0	denovo_WM_7:-10:0.710
chr5	75818844	75818977	reg1015823.p1	3.831	+	TSC_hg19_v1_chr5_+_75699106 AK291066 NM_006633 U51903	-119794	+	AK094917 BC100824 BC100825 BC100826 BC100827 NM_014979	-439639	+	TSC_hg19_v1_chr5_-_75013228 BC010695 AK296071 BC065750 AK311296 BC050459 NM_001099271	-805650	-	BC095499 AB464500 AK312848 BC093648 BC093650 U92971 AK298585 BX537386 NM_004101	100235	-	TSC_hg19_v1_chr5_+_76011924 AK308169 NM_001992 AK297131 M62424 AK314202 BC051909 BC002464 BC016059 BT007279 CU677972 DQ895099 EU176315	193046	+	NM_005242 BC018130 TSC_hg19_v1_chr5_+_76114854 U34038	295942	+	AK291066|IQGAP2|10788|IQ motif containing GTPase activating protein 2##NM_006633|IQGAP2|10788|IQ motif containing GTPase activating protein 2##U51903|IQGAP2|10788|IQ motif containing GTPase activating protein 2##AK094917|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100824|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100825|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100826|SV2C|22987|synaptic vesicle glycoprotein 2C##BC100827|SV2C|22987|synaptic vesicle glycoprotein 2C##NM_014979|SV2C|22987|synaptic vesicle glycoprotein 2C##BC010695|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK296071|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC065750|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##AK311296|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC050459|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##NM_001099271|POC5|134359|POC5 centriolar protein homolog (Chlamydomonas)##BC095499|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK312848|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093648|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BC093650|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##U92971|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##BX537386|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##NM_004101|F2RL2|2151|coagulation factor II (thrombin) receptor-like 2##AK308169|F2R|2149|coagulation factor II (thrombin) receptor##NM_001992|F2R|2149|coagulation factor II (thrombin) receptor##AK297131|F2R|2149|coagulation factor II (thrombin) receptor##M62424|F2R|2149|coagulation factor II (thrombin) receptor##AK314202|F2R|2149|coagulation factor II (thrombin) receptor##BC051909|F2R|2149|coagulation factor II (thrombin) receptor##BC002464|F2R|2149|coagulation factor II (thrombin) receptor##BC016059|F2R|2149|coagulation factor II (thrombin) receptor##BT007279|F2R|2149|coagulation factor II (thrombin) receptor##DQ895099|F2R|2149|coagulation factor II (thrombin) receptor##EU176315|F2R|2149|coagulation factor II (thrombin) receptor##NM_005242|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##BC018130|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1##U34038|F2RL1|2150|coagulation factor II (thrombin) receptor-like 1	0.988142	0.0	
chr6	135424579	135424675	reg1001112.p2	3.831	+	TSC_hg19_v1_chr6_-_135375958 AK024258 AK295545 AF161394 U87791 AJ459826 AJ459827 NM_001145158 NM_001145207 NM_006620	-48633	-	CU674720 EU831981 EU832074 TSC_hg19_v1_chr6_-_135375948 BC040849 AJ420551 BC001465	-48739	-	AK290784 AK298325 BC020849 BC114473 BC113862 AF303134 AK074266 AK222848 TSC_hg19_v1_chr6_-_135271252 NM_001193480 NM_022568 NM_170771	-153395	-	TSC_hg19_v1_chr6_+_135502445 AJ606317 AJ606318 AJ606319 AJ606320 AJ606321 AJ606322 AJ606323 AJ606324 NM_001130172 NM_001130173 NM_001161656 NM_001161657 NM_001161658 NM_001161659 NM_001161660 NM_005375 X52125	77821	+	TSC_hg19_v1_chr6_+_135502507 BC064955	77868	+	TSC_hg19_v1_chr6_+_135502539 AJ616235 M15024 AJ616791 AF104863 AB527731 AY787443 AY787444 AY787445 AY787446 AY787447 AY787448 AY787449 AY787450 AY787451 AY787452 AY787453 AY787454 AY787455 AY787456 AY787457 AY787458 AY787459 AY787460 AY787461 AY787462 AY787463 AY787464 AY787465 AY787466 AY787467 AY787468 AY787469 AY787470 AY787471 AY787472 AY787473 AY787474 AY787475	77959	+	AK024258|HBS1L|10767|HBS1-like (S. cerevisiae)##AK295545|HBS1L|10767|HBS1-like (S. cerevisiae)##AF161394|HBS1L|10767|HBS1-like (S. cerevisiae)##U87791|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459826|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ459827|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145158|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_001145207|HBS1L|10767|HBS1-like (S. cerevisiae)##NM_006620|HBS1L|10767|HBS1-like (S. cerevisiae)##EU831981|HBS1L|10767|HBS1-like (S. cerevisiae)##EU832074|HBS1L|10767|HBS1-like (S. cerevisiae)##BC040849|HBS1L|10767|HBS1-like (S. cerevisiae)##AJ420551|HBS1L|10767|HBS1-like (S. cerevisiae)##BC001465|HBS1L|10767|HBS1-like (S. cerevisiae)##AK290784|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK298325|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC020849|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC114473|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##BC113862|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AF303134|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK074266|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AK222848|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_001193480|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_022568|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##NM_170771|ALDH8A1|64577|aldehyde dehydrogenase 8 family, member A1##AJ606317|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606318|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606319|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606320|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606321|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606322|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606323|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ606324|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130172|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001130173|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161656|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161657|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161658|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161659|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_001161660|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##NM_005375|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##X52125|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##BC064955|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616235|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##M15024|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AJ616791|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AF104863|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787443|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787444|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787445|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787446|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787447|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787448|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787449|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787450|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787451|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787452|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787453|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787454|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787455|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787456|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787457|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787458|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787459|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787460|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787461|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787462|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787463|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787464|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787465|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787466|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787467|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787468|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787469|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787470|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787471|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787472|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787473|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787474|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)##AY787475|MYB|4602|v-myb myeloblastosis viral oncogene homolog (avian)	1.010974	0.0	denovo_WM_7:103:0.819
chr9	135230706	135230805	reg1012214.p2	3.831	+	TSC_hg19_v1_chr9_-_135230374 BX538166 NM_015046	-348	-	TSC_hg19_v1_chr9_-_135230352 AK307608 BX537849	-407	-	TSC_hg19_v1_chr9_-_135230312 AK125448	-525	-	TSC_hg19_v1_chr9_-_135282210 BC050734 X83973 BC143821 BC127669 BC127670 BC143048 BC143049 BC062692 BC104639 AK225119 AK302902 NM_001205296 NM_007344	51446	-	AK128819 NM_207417 BC118593 BC124555	54857	+	TSC_hg19_v1_chr9_+_135457992 AK054797 NM_020064 BC136956 BC136969 BC144433 AF325688 AB463426 AF321618	227324	+	BX538166|SETX|23064|senataxin##NM_015046|SETX|23064|senataxin##AK307608|SETX|23064|senataxin##BX537849|SETX|23064|senataxin##AK125448|SETX|23064|senataxin##BC050734|TTF1|7270|transcription termination factor, RNA polymerase I##BC143821|TTF1|7270|transcription termination factor, RNA polymerase I##BC127669|TTF1|7270|transcription termination factor, RNA polymerase I##BC127670|TTF1|7270|transcription termination factor, RNA polymerase I##BC143048|TTF1|7270|transcription termination factor, RNA polymerase I##BC143049|TTF1|7270|transcription termination factor, RNA polymerase I##BC062692|TTF1|7270|transcription termination factor, RNA polymerase I##BC104639|TTF1|7270|transcription termination factor, RNA polymerase I##AK225119|TTF1|7270|transcription termination factor, RNA polymerase I##AK302902|TTF1|7270|transcription termination factor, RNA polymerase I##NM_001205296|TTF1|7270|transcription termination factor, RNA polymerase I##NM_007344|TTF1|7270|transcription termination factor, RNA polymerase I##AK128819|C9orf171|389799|chromosome 9 open reading frame 171##NM_207417|C9orf171|389799|chromosome 9 open reading frame 171##BC118593|C9orf171|389799|chromosome 9 open reading frame 171##BC124555|C9orf171|389799|chromosome 9 open reading frame 171##AK054797|BARHL1|56751|BarH-like homeobox 1##NM_020064|BARHL1|56751|BarH-like homeobox 1##BC136956|BARHL1|56751|BarH-like homeobox 1##BC136969|BARHL1|56751|BarH-like homeobox 1##BC144433|BARHL1|56751|BarH-like homeobox 1##AF325688|BARHL1|56751|BarH-like homeobox 1##AF321618|BARHL1|56751|BarH-like homeobox 1	0.79451	0.0	denovo_WM_7:-17:0.323	denovo_WM_7:-20:0.354
chr9	3479710	3479818	reg1017976.p1	3.831	+	AK127804 TSC_hg19_v1_chr9_-_3223066	-256728	-	TSC_hg19_v1_chr9_-_2844102 AK315531 NM_014878	-635651	-	TSC_hg19_v1_chr9_-_2844084 AL832245 AK225953 AL832239	-635675	-	TSC_hg19_v1_chr9_-_3525889 AK310956 AK289540	46075	-	TSC_hg19_v1_chr9_-_3525983 BC022191 NM_002919 NM_134428	46240	-	TSC_hg19_v1_chr9_+_3526079 AK125504	46324	+	AK315531|KIAA0020|9933|KIAA0020##NM_014878|KIAA0020|9933|KIAA0020##AL832245|KIAA0020|9933|KIAA0020##AK225953|KIAA0020|9933|KIAA0020##AL832239|KIAA0020|9933|KIAA0020##AK310956|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##AK289540|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##BC022191|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_002919|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)##NM_134428|RFX3|5991|regulatory factor X, 3 (influences HLA class II expression)	0.0	0.0	
chr14	55508701	55508767	reg1009673.p2	3.830	+	TSC_hg19_v1_chr14_+_55493974 NM_080867 NM_199421 BX161418 CR933659 BC060790 AK124083	-14805	+	TSC_hg19_v1_chr14_-_55493818 BC043349 NM_001008396 NM_007086	-14923	-	TSC_hg19_v1_chr14_-_55493780 BC000622 BC005040 AK293005 BC063041	-14949	-	TSC_hg19_v1_chr14_+_55518364 NM_144578 AK315501	9606	+	TSC_hg19_v1_chr14_+_55518382 AL834285	9643	+	AK025580 TSC_hg19_v1_chr14_+_55518408 BC015621	9697	+	NM_080867|SOCS4|122809|suppressor of cytokine signaling 4##NM_199421|SOCS4|122809|suppressor of cytokine signaling 4##BX161418|SOCS4|122809|suppressor of cytokine signaling 4##CR933659|SOCS4|122809|suppressor of cytokine signaling 4##BC060790|SOCS4|122809|suppressor of cytokine signaling 4##AK124083|SOCS4|122809|suppressor of cytokine signaling 4##BC043349|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_001008396|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_007086|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC000622|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC005040|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##AK293005|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##BC063041|WDHD1|11169|WD repeat and HMG-box DNA binding protein 1##NM_144578|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AK315501|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AL834285|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##AK025580|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like##BC015621|MAPK1IP1L|93487|mitogen-activated protein kinase 1 interacting protein 1-like	0.045776	0.0	
chr17	36507295	36507374	reg1014717.p1	3.830	+	AY584611 NM_001004334	-7642	-	TSC_hg19_v1_chr17_+_36453138 AK172741 AK225031 HQ258365 BC006235	-54197	+	NM_032351 AK293605 BC130382 BC130384 TSC_hg19_v1_chr17_+_36453120	-54280	+	TSC_hg19_v1_chr17_+_36507726 BC121030 BC121031 BC128607 NM_014598	529	+	TSC_hg19_v1_chr17_+_36584709 NM_001199417	77371	+	TSC_hg19_v1_chr17_-_36729122 AK295027	221788	-	AY584611|GPR179|440435|G protein-coupled receptor 179##NM_001004334|GPR179|440435|G protein-coupled receptor 179##AK172741|MRPL45|84311|mitochondrial ribosomal protein L45##AK225031|MRPL45|84311|mitochondrial ribosomal protein L45##HQ258365|MRPL45|84311|mitochondrial ribosomal protein L45##BC006235|MRPL45|84311|mitochondrial ribosomal protein L45##NM_032351|MRPL45|84311|mitochondrial ribosomal protein L45##AK293605|MRPL45|84311|mitochondrial ribosomal protein L45##BC130382|MRPL45|84311|mitochondrial ribosomal protein L45##BC130384|MRPL45|84311|mitochondrial ribosomal protein L45##BC121030|SOCS7|30837|suppressor of cytokine signaling 7##BC121031|SOCS7|30837|suppressor of cytokine signaling 7##BC128607|SOCS7|30837|suppressor of cytokine signaling 7##NM_014598|SOCS7|30837|suppressor of cytokine signaling 7##NM_001199417|ARHGAP23|57636|Rho GTPase activating protein 23##AK295027|SRCIN1|80725|SRC kinase signaling inhibitor 1	0.0	0.0	
chr4	75071903	75072083	reg1001035.p1	3.830	+	TSC_hg19_v1_chr4_+_75023834 AX794782 BC037529 NM_001144978 BC041943 AX794779	-48128	+	NM_002089 TSC_hg19_v1_chr4_-_74965027	-106971	-	CR542171 CU677427 AB590957 X53799 M57731 BC015753 BC053653 TSC_hg19_v1_chr4_-_74964913 AK308504 M36820 AK311304 BC005276	-107118	-	AK289455 BC127938 BC127939 DQ235269 AY358920 NM_001013442 DQ235264 DQ235265 DQ235266 DQ235267 DQ235268	102226	+	TSC_hg19_v1_chr4_+_75230861 AK314959 D30783 NM_001432 BC035806 BC136404 BC136405 CR541887	158947	+	BC009799 M30704 NM_001657	238859	+	BC037529|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##NM_001144978|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##BC041943|MTHFD2L|441024|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like##NM_002089|CXCL2|2920|chemokine (C-X-C motif) ligand 2##CR542171|CXCL2|2920|chemokine (C-X-C motif) ligand 2##X53799|CXCL2|2920|chemokine (C-X-C motif) ligand 2##M57731|CXCL2|2920|chemokine (C-X-C motif) ligand 2##BC015753|CXCL2|2920|chemokine (C-X-C motif) ligand 2##BC053653|CXCL2|2920|chemokine (C-X-C motif) ligand 2##M36820|CXCL2|2920|chemokine (C-X-C motif) ligand 2##AK289455|EPGN|255324|epithelial mitogen homolog (mouse)##BC127938|EPGN|255324|epithelial mitogen homolog (mouse)##BC127939|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235269|EPGN|255324|epithelial mitogen homolog (mouse)##AY358920|EPGN|255324|epithelial mitogen homolog (mouse)##NM_001013442|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235264|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235265|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235266|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235267|EPGN|255324|epithelial mitogen homolog (mouse)##DQ235268|EPGN|255324|epithelial mitogen homolog (mouse)##AK314959|EREG|2069|epiregulin##D30783|EREG|2069|epiregulin##NM_001432|EREG|2069|epiregulin##BC035806|EREG|2069|epiregulin##BC136404|EREG|2069|epiregulin##BC136405|EREG|2069|epiregulin##CR541887|EREG|2069|epiregulin##BC009799|AREG|374|amphiregulin##M30704|AREG|374|amphiregulin##NM_001657|AREG|374|amphiregulin	0.0	0.0	
chr7	17537615	17537730	reg1013042.p1	3.830	+	TSC_hg19_v1_chr7_+_17382906 BC021696	-154766	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-199403	+	AY359065 BC058284 NM_176813	-616068	-	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	442377	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	442455	-	BC062797 BC005309 M57423 NM_175886	529793	-	BC021696|AHR|196|aryl hydrocarbon receptor##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13##BC062797|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##BC005309|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##M57423|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1##NM_175886|PRPS1L1|221823|phosphoribosyl pyrophosphate synthetase 1-like 1	0.286662	0.0	denovo_WM_7:61:0.221
chr9	116143346	116143493	reg1011943.p2	3.830	+	TSC_hg19_v1_chr9_-_116139236 AK315401	-4173	-	BC031878 NM_031219	-5079	-	NM_017688 AK092607 AJ276691 AB527588	-31586	+	AK295945 TSC_hg19_v1_chr9_-_116163528	20044	-	TSC_hg19_v1_chr9_-_116163541 BC000977	20119	-	TSC_hg19_v1_chr9_-_116163563 AK290490 AK312552	20141	-	AK315401|HDHD3|81932|haloacid dehalogenase-like hydrolase domain containing 3##BC031878|HDHD3|81932|haloacid dehalogenase-like hydrolase domain containing 3##NM_031219|HDHD3|81932|haloacid dehalogenase-like hydrolase domain containing 3##NM_017688|BSPRY|54836|B-box and SPRY domain containing##AK092607|BSPRY|54836|B-box and SPRY domain containing##AJ276691|BSPRY|54836|B-box and SPRY domain containing##AK295945|ALAD|210|aminolevulinate dehydratase##BC000977|ALAD|210|aminolevulinate dehydratase##AK290490|ALAD|210|aminolevulinate dehydratase##AK312552|ALAD|210|aminolevulinate dehydratase	0.968249	0.0	denovo_WM_7:83:0.843
chr9	2015348	2015426	reg1010219.p1	3.830	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	-91	+	AF130729 NM_181872	-964778	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-965017	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	606420	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	606687	+	S73849 TSC_hg19_v1_chr9_+_2622109 D16493 BC142653	606725	+	BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor##S73849|VLDLR|7436|very low density lipoprotein receptor##D16493|VLDLR|7436|very low density lipoprotein receptor##BC142653|VLDLR|7436|very low density lipoprotein receptor	0.0	0.0	
chrX	1613398	1613504	reg1017227.p2	3.830	+	AK301844 NM_001173473	-40800	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-41650	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-102482	-	BC043610 GQ280263 NM_178129 AK126147	42587	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	97078	+	NM_004043 U11090	100896	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.907033	0.0	denovo_WM_7:-15:0.448	denovo_WM_7:-16:0.390
chr10	121447688	121447760	reg1019939.p1	3.829	+	TSC_hg19_v1_chr10_+_121411086 BC001445 AK291333 BC014656 DQ893416 DQ896772 CU675397 AB385565	-36588	+	TSC_hg19_v1_chr10_+_121411079 BC107786	-36649	+	TSC_hg19_v1_chr10_+_121411053 AL137582	-36671	+	TSC_hg19_v1_chr10_+_121485568 NM_001243195 NM_014937 AK307758	37814	+	TSC_hg19_v1_chr10_+_121485596 BC067820 AB023183	37890	+	TSC_hg19_v1_chr10_+_121485653 BC111493 BC052367 BC082755 AB385409	37981	+	AK291333|BAG3|9531|BCL2-associated athanogene 3##BC014656|BAG3|9531|BCL2-associated athanogene 3##DQ893416|BAG3|9531|BCL2-associated athanogene 3##DQ896772|BAG3|9531|BCL2-associated athanogene 3##BC107786|BAG3|9531|BCL2-associated athanogene 3##AL137582|BAG3|9531|BCL2-associated athanogene 3##NM_001243195|INPP5F|22876|inositol polyphosphate-5-phosphatase F##NM_014937|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AK307758|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC067820|INPP5F|22876|inositol polyphosphate-5-phosphatase F##AB023183|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC111493|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC052367|INPP5F|22876|inositol polyphosphate-5-phosphatase F##BC082755|INPP5F|22876|inositol polyphosphate-5-phosphatase F	0.0	0.043068	
chr5	96298293	96298414	reg1014912.p1	3.829	+	U62769 NM_175920	-4199	+	TSC_hg19_v1_chr5_+_96271783 U62768 AK314226 BC111718 BC113117 BC028692	-26559	+	NM_005575 D50810	-26987	+	BC036467 TSC_hg19_v1_chr5_-_96478440	180089	-	AK307885 TSC_hg19_v1_chr5_-_96478482	180122	-	AK291034 TSC_hg19_v1_chr5_-_96478504 NM_153234 AK098400	180185	-	U62769|LNPEP|4012|leucyl/cystinyl aminopeptidase##NM_175920|LNPEP|4012|leucyl/cystinyl aminopeptidase##U62768|LNPEP|4012|leucyl/cystinyl aminopeptidase##AK314226|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC111718|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC113117|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC028692|LNPEP|4012|leucyl/cystinyl aminopeptidase##NM_005575|LNPEP|4012|leucyl/cystinyl aminopeptidase##D50810|LNPEP|4012|leucyl/cystinyl aminopeptidase##BC036467|LIX1|167410|Lix1 homolog (chicken)##AK307885|LIX1|167410|Lix1 homolog (chicken)##AK291034|LIX1|167410|Lix1 homolog (chicken)##NM_153234|LIX1|167410|Lix1 homolog (chicken)##AK098400|LIX1|167410|Lix1 homolog (chicken)	1.97559	0.0	denovo_WM_7:0:0.770	denovo_WM_7:-22:0.851
chr15	55583035	55583157	reg1003449.p2	3.828	+	TSC_hg19_v1_chr15_-_55582012 AK312836 NM_183235	-1105	-	BC132800 BC136423 BC107680 NM_183236	-19998	-	AF125393 NM_183234 U57094 U38654 NM_004580	-20559	-	NM_004855 AK293666 AK314706 BC017711	28067	+	TSC_hg19_v1_chr15_-_55611322 AB593170	28244	-	D42138 TSC_hg19_v1_chr15_+_55611429 AK223330	28328	+	AK312836|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183235|RAB27A|5873|RAB27A, member RAS oncogene family##BC132800|RAB27A|5873|RAB27A, member RAS oncogene family##BC136423|RAB27A|5873|RAB27A, member RAS oncogene family##BC107680|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183236|RAB27A|5873|RAB27A, member RAS oncogene family##AF125393|RAB27A|5873|RAB27A, member RAS oncogene family##NM_183234|RAB27A|5873|RAB27A, member RAS oncogene family##U57094|RAB27A|5873|RAB27A, member RAS oncogene family##U38654|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004580|RAB27A|5873|RAB27A, member RAS oncogene family##NM_004855|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK293666|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK314706|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##BC017711|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##D42138|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B##AK223330|PIGB|9488|phosphatidylinositol glycan anchor biosynthesis, class B	0.0	0.0	
chr16	14380923	14381045	reg1013453.p1	3.828	+	BC047761 TSC_hg19_v1_chr16_+_14294209	-86786	+	TSC_hg19_v1_chr16_+_14280544 AK093577 AX748211	-100466	+	TSC_hg19_v1_chr16_+_14165175 AK126948 AK294765 AY374297 NM_014048	-215898	+	CU690630 AJ005698 BC044763 BC050029 TSC_hg19_v1_chr16_-_14724066 AK303348	343044	-	AK299653 TSC_hg19_v1_chr16_-_14724118 AK301648 AK293189 AK315020 NM_001134477 NM_001242992 NM_002582	343149	-	NM_016561 TSC_hg19_v1_chr16_+_14726776 AF173003	345755	+	BC047761|MKL2|57496|MKL/myocardin-like 2##AK093577|MKL2|57496|MKL/myocardin-like 2##AK126948|MKL2|57496|MKL/myocardin-like 2##AK294765|MKL2|57496|MKL/myocardin-like 2##AY374297|MKL2|57496|MKL/myocardin-like 2##NM_014048|MKL2|57496|MKL/myocardin-like 2##AJ005698|PARN|5073|poly(A)-specific ribonuclease##BC044763|PARN|5073|poly(A)-specific ribonuclease##BC050029|PARN|5073|poly(A)-specific ribonuclease##AK303348|PARN|5073|poly(A)-specific ribonuclease##AK299653|PARN|5073|poly(A)-specific ribonuclease##AK301648|PARN|5073|poly(A)-specific ribonuclease##AK293189|PARN|5073|poly(A)-specific ribonuclease##AK315020|PARN|5073|poly(A)-specific ribonuclease##NM_001134477|PARN|5073|poly(A)-specific ribonuclease##NM_001242992|PARN|5073|poly(A)-specific ribonuclease##NM_002582|PARN|5073|poly(A)-specific ribonuclease##NM_016561|BFAR|51283|bifunctional apoptosis regulator##AF173003|BFAR|51283|bifunctional apoptosis regulator	1.31907	0.0	denovo_WM_7:102:0.211
chr19	8261491	8261671	reg1013336.p1	3.828	+	AB384635 AB053450 BC153882 NM_032447	-49206	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-143634	+	AK292662 NM_001201359 NM_005624	-143936	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	12667	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	111628	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	124676	-	AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##AK292662|CCL25|6370|chemokine (C-C motif) ligand 25##NM_001201359|CCL25|6370|chemokine (C-C motif) ligand 25##NM_005624|CCL25|6370|chemokine (C-C motif) ligand 25##NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.0	0.0	
chr3	114528559	114528675	reg1007782.p1	3.828	+	AK225788 NM_001164344 NM_001164345	-50497	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	-184823	-	BC029041 NM_001164347	-185565	-	BC090936 NM_001164343	261623	-	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	337497	-	NM_001130064 NM_002045	813533	+	AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20##BC029041|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164347|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43	0.951563	0.0	denovo_WM_7:-73:0.487	denovo_WM_7:-75:0.278
chr5	180258525	180258669	reg1007016.p2	3.828	+	TSC_hg19_v1_chr5_+_180258018 BC047586	-592	+	TSC_hg19_v1_chr5_+_180257959 AK308536	-645	+	AK057194 AK124428 TSC_hg19_v1_chr5_-_180242542	-16055	-	AK295714 TSC_hg19_v1_chr5_-_180288277 AK303450 BC029573 AK091376 AX746945 NM_001172638 NM_152283	29694	-	NM_001040462 NM_001159707 NM_001159708 NM_001159709 NM_024850 AK296597 AY358523 AK025111 AK225213 BC119696 BC119697	67577	+	AK298687 NM_001159710 AK309639 AK308012	77973	+	BC047586|LOC729678|729678|uncharacterized LOC729678##AK057194|MGAT1|4245|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK295714|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK303450|ZFP62|643836|zinc finger protein 62 homolog (mouse)##BC029573|ZFP62|643836|zinc finger protein 62 homolog (mouse)##AK091376|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001172638|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_152283|ZFP62|643836|zinc finger protein 62 homolog (mouse)##NM_001040462|BTNL8|79908|butyrophilin-like 8##NM_001159707|BTNL8|79908|butyrophilin-like 8##NM_001159708|BTNL8|79908|butyrophilin-like 8##NM_001159709|BTNL8|79908|butyrophilin-like 8##NM_024850|BTNL8|79908|butyrophilin-like 8##AK296597|BTNL8|79908|butyrophilin-like 8##AY358523|BTNL8|79908|butyrophilin-like 8##AK025111|BTNL8|79908|butyrophilin-like 8##AK225213|BTNL8|79908|butyrophilin-like 8##BC119696|BTNL8|79908|butyrophilin-like 8##BC119697|BTNL8|79908|butyrophilin-like 8##AK298687|BTNL8|79908|butyrophilin-like 8##NM_001159710|BTNL8|79908|butyrophilin-like 8##AK309639|BTNL8|79908|butyrophilin-like 8##AK308012|BTNL8|79908|butyrophilin-like 8	0.0	0.896982	CTCF.p2:9:0.897
chr8	131428050	131428116	reg1012152.p1	3.828	+	TSC_hg19_v1_chr8_-_131028933 AF208851 CR749628	-399200	-	TSC_hg19_v1_chr8_-_131028699 AK002059	-399389	-	BC016345 TSC_hg19_v1_chr8_-_131028667	-399424	-	TSC_hg19_v1_chr8_-_131456196 NM_001247996 NM_018482	27948	-	NM_001115	624751	-	TSC_hg19_v1_chr8_+_132916339 NM_015137 BC071611 BC152442 D63477	1488274	+	AF208851|FAM49B|51571|family with sequence similarity 49, member B##CR749628|FAM49B|51571|family with sequence similarity 49, member B##AK002059|FAM49B|51571|family with sequence similarity 49, member B##BC016345|FAM49B|51571|family with sequence similarity 49, member B##NM_001247996|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_018482|ASAP1|50807|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1##NM_001115|ADCY8|114|adenylate cyclase 8 (brain)##NM_015137|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC071611|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##BC152442|EFR3A|23167|EFR3 homolog A (S. cerevisiae)##D63477|EFR3A|23167|EFR3 homolog A (S. cerevisiae)	0.994878	0.0	denovo_WM_7:-46:0.332	denovo_WM_7:-47:0.332	denovo_WM_7:-48:0.332
chr8	49463155	49463278	reg1016333.p1	3.828	+	TSC_hg19_v1_chr8_+_48920990 BC016332 BC016710 BC007051 AK313447 U62136 AF049140 BC028673 BC062418 NM_003350	-542235	+	AK022899 TSC_hg19_v1_chr8_+_48873533 BC031061 AB590735	-589598	+	TSC_hg19_v1_chr8_+_48873513 AK296913	-589703	+	AK021829 BC025676 BC029586 AK316037 AK299659 AK307101 NM_001142857 NM_024593	184577	-	AB464227 CU677105 EU446862 TSC_hg19_v1_chr8_-_49833989 BC015895 BC014890 AK223368 AK312661 NM_003068	370694	-	NM_001007176 BC017981 AJ276240	521693	+	BC016332|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##BC016710|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##BC007051|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##AK313447|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##U62136|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##AF049140|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##BC028673|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##BC062418|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##NM_003350|UBE2V2|7336|ubiquitin-conjugating enzyme E2 variant 2##AK022899|MCM4|4173|minichromosome maintenance complex component 4##BC031061|MCM4|4173|minichromosome maintenance complex component 4##AK296913|MCM4|4173|minichromosome maintenance complex component 4##AK021829|EFCAB1|79645|EF-hand calcium binding domain 1##BC025676|EFCAB1|79645|EF-hand calcium binding domain 1##BC029586|EFCAB1|79645|EF-hand calcium binding domain 1##AK316037|EFCAB1|79645|EF-hand calcium binding domain 1##AK299659|EFCAB1|79645|EF-hand calcium binding domain 1##AK307101|EFCAB1|79645|EF-hand calcium binding domain 1##NM_001142857|EFCAB1|79645|EF-hand calcium binding domain 1##NM_024593|EFCAB1|79645|EF-hand calcium binding domain 1##EU446862|SNAI2|6591|snail homolog 2 (Drosophila)##BC015895|SNAI2|6591|snail homolog 2 (Drosophila)##BC014890|SNAI2|6591|snail homolog 2 (Drosophila)##AK223368|SNAI2|6591|snail homolog 2 (Drosophila)##AK312661|SNAI2|6591|snail homolog 2 (Drosophila)##NM_003068|SNAI2|6591|snail homolog 2 (Drosophila)##NM_001007176|C8orf22|492307|chromosome 8 open reading frame 22##BC017981|C8orf22|492307|chromosome 8 open reading frame 22##AJ276240|C8orf22|492307|chromosome 8 open reading frame 22	0.988542	0.0	denovo_WM_7:19:0.579
chrX	94602002	94602110	reg1011405.p1	3.828	+	NM_001171109 NM_001171110 NM_001171111 NM_173698	-1673045	+	AK090772 D50370 TSC_hg19_v1_chrX_-_92928576 BC034954 AK315176 AK223621 BC094729 AK095682 NM_004538	-1673433	-	AJ564931 NM_001168360 NM_001168361 NM_001168362 NM_001168363 AF206516 AF217288 AY861432 AY861433 AY861434 AY861435	-3511575	+	NM_006729 NM_007309 Y15908 Y15909 TSC_hg19_v1_chrX_+_95939840 AK291272	1337695	+	TSC_hg19_v1_chrX_+_95939855 BC117414 BC143838 AB384711	1337898	+	NM_013347 U24186 BC069791 BC069808 BC069824 BC104013 BC104014	1536914	+	NM_001171109|FAM133A|286499|family with sequence similarity 133, member A##NM_001171110|FAM133A|286499|family with sequence similarity 133, member A##NM_001171111|FAM133A|286499|family with sequence similarity 133, member A##NM_173698|FAM133A|286499|family with sequence similarity 133, member A##AK090772|NAP1L3|4675|nucleosome assembly protein 1-like 3##D50370|NAP1L3|4675|nucleosome assembly protein 1-like 3##BC034954|NAP1L3|4675|nucleosome assembly protein 1-like 3##AK315176|NAP1L3|4675|nucleosome assembly protein 1-like 3##AK223621|NAP1L3|4675|nucleosome assembly protein 1-like 3##BC094729|NAP1L3|4675|nucleosome assembly protein 1-like 3##AK095682|NAP1L3|4675|nucleosome assembly protein 1-like 3##NM_004538|NAP1L3|4675|nucleosome assembly protein 1-like 3##AJ564931|PCDH11X|27328|protocadherin 11 X-linked##NM_001168360|PCDH11X|27328|protocadherin 11 X-linked##NM_001168361|PCDH11X|27328|protocadherin 11 X-linked##NM_001168362|PCDH11X|27328|protocadherin 11 X-linked##NM_001168363|PCDH11X|27328|protocadherin 11 X-linked##AF206516|PCDH11X|27328|protocadherin 11 X-linked##AF217288|PCDH11X|27328|protocadherin 11 X-linked##AY861432|PCDH11X|27328|protocadherin 11 X-linked##AY861433|PCDH11X|27328|protocadherin 11 X-linked##AY861434|PCDH11X|27328|protocadherin 11 X-linked##AY861435|PCDH11X|27328|protocadherin 11 X-linked##NM_006729|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_007309|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15908|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##Y15909|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##AK291272|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC117414|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##BC143838|DIAPH2|1730|diaphanous homolog 2 (Drosophila)##NM_013347|RPA4|29935|replication protein A4, 30kDa##U24186|RPA4|29935|replication protein A4, 30kDa##BC069791|RPA4|29935|replication protein A4, 30kDa##BC069808|RPA4|29935|replication protein A4, 30kDa##BC069824|RPA4|29935|replication protein A4, 30kDa##BC104013|RPA4|29935|replication protein A4, 30kDa##BC104014|RPA4|29935|replication protein A4, 30kDa	0.0	0.777068	CTCF.p2:-8:0.777
chr10	72336055	72336229	reg1000612.p2	3.827	+	TSC_hg19_v1_chr10_+_72238575 NM_014431 AB033100 BC136375 BC136376	-97527	+	TSC_hg19_v1_chr10_-_72201438 BC104976 NM_018055 BC112025	-134691	-	BC033585 TSC_hg19_v1_chr10_-_72201372	-134776	-	BC047695 TSC_hg19_v1_chr10_-_72362497 AK312754	26327	-	BC063043 TSC_hg19_v1_chr10_-_72362518 FJ555237 NM_001083116 NM_005041	26384	-	AB462932 AF358666 AJ345098 NM_080722 NM_139155	96415	+	NM_014431|KIAA1274|27143|KIAA1274##AB033100|KIAA1274|27143|KIAA1274##BC136375|KIAA1274|27143|KIAA1274##BC136376|KIAA1274|27143|KIAA1274##BC104976|NODAL|4838|nodal homolog (mouse)##NM_018055|NODAL|4838|nodal homolog (mouse)##BC112025|NODAL|4838|nodal homolog (mouse)##BC033585|NODAL|4838|nodal homolog (mouse)##BC047695|PRF1|5551|perforin 1 (pore forming protein)##AK312754|PRF1|5551|perforin 1 (pore forming protein)##BC063043|PRF1|5551|perforin 1 (pore forming protein)##FJ555237|PRF1|5551|perforin 1 (pore forming protein)##NM_001083116|PRF1|5551|perforin 1 (pore forming protein)##NM_005041|PRF1|5551|perforin 1 (pore forming protein)##AF358666|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##AJ345098|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_080722|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14##NM_139155|ADAMTS14|140766|ADAM metallopeptidase with thrombospondin type 1 motif, 14	0.0	0.0	
chr17	34428748	34428870	reg1015251.p1	3.827	+	D63785 AB463487 BC171831 BC171891 BC071834 M25315 D00044 M23452 X03754 NM_002983	-11364	-	AB000221 NM_002988 Y13710 BC096124 BC096125 BC096126 BC096127 BC069700 AB590849 AB451458 CR407660	-37139	+	AB590848 U67128 U85767 BC093970 BC143310 NM_005064 NM_145898 U58913	-83841	-	AY766446 AY766448 NM_002984 BC107433 M23502 BC104226 BC104227 M25316 X53683 BC027961 X16166 AY312578 CR542119 M57503	2458	+	BC033670 AK301823 BC071680 AK225985 AK292257 NM_001001417	75141	-	D63785 BT006783 BC146914 BC146919 BC147008 BC147013 BC007783 X52149 BC027888 BC063472 NM_001001437 NM_021006 BC107710	95296	-	D63785|CCL3|6348|chemokine (C-C motif) ligand 3##BC171831|CCL3|6348|chemokine (C-C motif) ligand 3##BC171891|CCL3|6348|chemokine (C-C motif) ligand 3##BC071834|CCL3|6348|chemokine (C-C motif) ligand 3##M25315|CCL3|6348|chemokine (C-C motif) ligand 3##D00044|CCL3|6348|chemokine (C-C motif) ligand 3##M23452|CCL3|6348|chemokine (C-C motif) ligand 3##X03754|CCL3|6348|chemokine (C-C motif) ligand 3##NM_002983|CCL3|6348|chemokine (C-C motif) ligand 3##AB000221|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##NM_002988|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##Y13710|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096124|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096125|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096126|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC096127|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##BC069700|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##AB451458|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##CR407660|CCL18|6362|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)##U67128|CCL23|6368|chemokine (C-C motif) ligand 23##U85767|CCL23|6368|chemokine (C-C motif) ligand 23##BC093970|CCL23|6368|chemokine (C-C motif) ligand 23##BC143310|CCL23|6368|chemokine (C-C motif) ligand 23##NM_005064|CCL23|6368|chemokine (C-C motif) ligand 23##NM_145898|CCL23|6368|chemokine (C-C motif) ligand 23##U58913|CCL23|6368|chemokine (C-C motif) ligand 23##AY766446|CCL4|6351|chemokine (C-C motif) ligand 4##AY766448|CCL4|6351|chemokine (C-C motif) ligand 4##NM_002984|CCL4|6351|chemokine (C-C motif) ligand 4##BC107433|CCL4|6351|chemokine (C-C motif) ligand 4##M23502|CCL4|6351|chemokine (C-C motif) ligand 4##BC104226|CCL4|6351|chemokine (C-C motif) ligand 4##BC104227|CCL4|6351|chemokine (C-C motif) ligand 4##M25316|CCL4|6351|chemokine (C-C motif) ligand 4##X53683|CCL4|6351|chemokine (C-C motif) ligand 4##BC027961|CCL4|6351|chemokine (C-C motif) ligand 4##X16166|CCL4|6351|chemokine (C-C motif) ligand 4##AY312578|CCL4|6351|chemokine (C-C motif) ligand 4##CR542119|CCL4|6351|chemokine (C-C motif) ligand 4##M57503|CCL4|6351|chemokine (C-C motif) ligand 4##BC033670|TBC1D3C|414060|TBC1 domain family, member 3C##AK301823|TBC1D3C|414060|TBC1 domain family, member 3C##BC071680|TBC1D3C|414060|TBC1 domain family, member 3C##AK225985|TBC1D3G|654341|TBC1 domain family, member 3G##AK292257|TBC1D3B|414059|TBC1 domain family, member 3B##NM_001001417|TBC1D3B|414059|TBC1 domain family, member 3B##D63785|CCL3|6348|chemokine (C-C motif) ligand 3##BT006783|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC146914|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC146919|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC147008|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC147013|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##BC007783|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##X52149|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC027888|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC063472|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##NM_001001437|CCL3L3|414062|chemokine (C-C motif) ligand 3-like 3##NM_021006|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1##BC107710|CCL3L1|6349|chemokine (C-C motif) ligand 3-like 1	0.0	0.0	
chr18	10590424	10590582	reg1013626.p1	3.827	+	TSC_hg19_v1_chr18_+_10526095 CR536554 CU674912	-64406	+	TSC_hg19_v1_chr18_+_10526051 BC001889	-64447	+	TSC_hg19_v1_chr18_+_10526033 AK294038 U78107 AK314495	-64475	+	NM_022068	558257	-	NM_182978 AK295088 TSC_hg19_v1_chr18_+_11689262 AK307260 BC050021	1098709	+	AK313902 TSC_hg19_v1_chr18_+_11751558 AK290054 NM_001142339 NM_002071	1161012	+	CR536554|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##BC001889|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK294038|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##U78107|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##AK314495|NAPG|8774|N-ethylmaleimide-sensitive factor attachment protein, gamma##NM_022068|PIEZO2|63895|piezo-type mechanosensitive ion channel component 2##NM_182978|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK295088|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK307260|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##BC050021|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK313902|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##AK290054|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_001142339|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type##NM_002071|GNAL|2774|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	0.999762	0.0	denovo_WM_7:17:0.298	denovo_WM_7:18:0.298	denovo_WM_7:19:0.298
chr19	12552051	12552231	reg1013747.p2	3.827	+	AK023025 BC032753 TSC_hg19_v1_chr19_-_12551836 AB011414 NM_005815	-275	-	AK299532 TSC_hg19_v1_chr19_-_12551771	-375	-	TSC_hg19_v1_chr19_-_12512035 BC057831 NM_001080821	-40087	-	BC136746 BC136751 AK290911 TSC_hg19_v1_chr19_-_12595603 BC036481	43435	-	TSC_hg19_v1_chr19_-_12595631 NM_152601	43487	-	BC136728 BC136729 TSC_hg19_v1_chr19_-_12662297 BC065023 AK095600 BC028367 AK092760 AX747711 BX647959 NM_144976	110132	-	AK023025|ZNF443|10224|zinc finger protein 443##BC032753|ZNF443|10224|zinc finger protein 443##AB011414|ZNF443|10224|zinc finger protein 443##NM_005815|ZNF443|10224|zinc finger protein 443##AK299532|ZNF443|10224|zinc finger protein 443##NM_001080821|ZNF799|90576|zinc finger protein 799##BC136746|ZNF709|163051|zinc finger protein 709##BC136751|ZNF709|163051|zinc finger protein 709##AK290911|ZNF709|163051|zinc finger protein 709##BC036481|ZNF709|163051|zinc finger protein 709##NM_152601|ZNF709|163051|zinc finger protein 709##BC136728|ZNF564|163050|zinc finger protein 564##BC136729|ZNF564|163050|zinc finger protein 564##BC065023|ZNF564|163050|zinc finger protein 564##BC028367|ZNF564|163050|zinc finger protein 564##AK092760|ZNF564|163050|zinc finger protein 564##BX647959|ZNF564|163050|zinc finger protein 564##NM_144976|ZNF564|163050|zinc finger protein 564	0.99786	0.0	denovo_WM_7:60:0.771
chr19	48621058	48621207	reg1009824.p1	3.827	+	AF058921 BC017956 AK022440 TSC_hg19_v1_chr19_-_48614075 AF065214 BC063416 AK314524 AK295400 NM_001159322 NM_001159323 NM_003706	-7072	-	HQ258076 BC126133 BC126135 AF169159 NM_019855	-73887	-	AF279147 NM_022142 BC015598	-123207	+	M36067 NM_000234 TSC_hg19_v1_chr19_-_48673602 AK314210 AK297296 AK303644 AB208791 AK225863 AK300370	52449	-	TSC_hg19_v1_chr19_+_48673949 BC043386	52821	+	CU691176 EU118120 EU118121 NM_001184900	123165	-	AF058921|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##BC017956|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##AK022440|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##AF065214|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##BC063416|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##AK314524|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##AK295400|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##NM_001159322|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##NM_001159323|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##NM_003706|PLA2G4C|8605|phospholipase A2, group IVC (cytosolic, calcium-independent)##HQ258076|CABP5|56344|calcium binding protein 5##BC126133|CABP5|56344|calcium binding protein 5##BC126135|CABP5|56344|calcium binding protein 5##AF169159|CABP5|56344|calcium binding protein 5##NM_019855|CABP5|56344|calcium binding protein 5##AF279147|ELSPBP1|64100|epididymal sperm binding protein 1##NM_022142|ELSPBP1|64100|epididymal sperm binding protein 1##BC015598|ELSPBP1|64100|epididymal sperm binding protein 1##M36067|LIG1|3978|ligase I, DNA, ATP-dependent##NM_000234|LIG1|3978|ligase I, DNA, ATP-dependent##AK314210|LIG1|3978|ligase I, DNA, ATP-dependent##AK297296|LIG1|3978|ligase I, DNA, ATP-dependent##AK303644|LIG1|3978|ligase I, DNA, ATP-dependent##AB208791|LIG1|3978|ligase I, DNA, ATP-dependent##AK225863|LIG1|3978|ligase I, DNA, ATP-dependent##AK300370|LIG1|3978|ligase I, DNA, ATP-dependent##BC043386|C19orf68|374920|chromosome 19 open reading frame 68##EU118120|CARD8|22900|caspase recruitment domain family, member 8##EU118121|CARD8|22900|caspase recruitment domain family, member 8##NM_001184900|CARD8|22900|caspase recruitment domain family, member 8	0.0	0.0	
chr22	29196953	29197029	reg1015272.p2	3.827	+	TSC_hg19_v1_chr22_+_29196668 AF086143	-308	+	TSC_hg19_v1_chr22_-_29196555 BC012841 AK292188 AK313761 NM_001079539 NM_005080	-424	-	BC015709 TSC_hg19_v1_chr22_-_29196526 AB463352 AM393640 CU013207 CU013495 DQ890989 DQ894165 CU674466 CR456611 AB076383 AB076384 BC000938 M31627	-500	-	TSC_hg19_v1_chr22_+_29279579 NM_001206998 AB051436 CR456397	82786	+	AK096397 NM_032173	116385	+	TSC_hg19_v1_chr22_+_29449893 BC042614	252934	+	BC012841|XBP1|7494|X-box binding protein 1##AK292188|XBP1|7494|X-box binding protein 1##AK313761|XBP1|7494|X-box binding protein 1##NM_001079539|XBP1|7494|X-box binding protein 1##NM_005080|XBP1|7494|X-box binding protein 1##BC015709|XBP1|7494|X-box binding protein 1##AM393640|XBP1|7494|X-box binding protein 1##CU013207|XBP1|7494|X-box binding protein 1##CU013495|XBP1|7494|X-box binding protein 1##DQ890989|XBP1|7494|X-box binding protein 1##DQ894165|XBP1|7494|X-box binding protein 1##CR456611|XBP1|7494|X-box binding protein 1##AB076383|XBP1|7494|X-box binding protein 1##AB076384|XBP1|7494|X-box binding protein 1##BC000938|XBP1|7494|X-box binding protein 1##M31627|XBP1|7494|X-box binding protein 1##NM_001206998|ZNRF3|84133|zinc and ring finger 3##AB051436|ZNRF3|84133|zinc and ring finger 3##CR456397|ZNRF3|84133|zinc and ring finger 3##AK096397|ZNRF3|84133|zinc and ring finger 3##NM_032173|ZNRF3|84133|zinc and ring finger 3##BC042614|ZNRF3|84133|zinc and ring finger 3	0.982239	0.0	denovo_WM_7:81:0.746
chr3	127307064	127307231	reg1018945.p2	3.827	+	AB037108 NM_016372	-7868	-	AK097460 BC137154 BC137155 TSC_hg19_v1_chr3_+_126912016	-395153	+	AB385178 NM_032242 X87832	-599707	+	TSC_hg19_v1_chr3_-_127309338 BC017058	2197	-	BC050711 NM_001136053 AF289568 TSC_hg19_v1_chr3_-_127309565 NM_001142646	2386	-	TSC_hg19_v1_chr3_+_127317252 AK128291 AK299934 AK309335 NM_004526 BC014272 BC007670	10093	+	AB037108|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_016372|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AK097460|C3orf56|285311|chromosome 3 open reading frame 56##BC137154|C3orf56|285311|chromosome 3 open reading frame 56##BC137155|C3orf56|285311|chromosome 3 open reading frame 56##NM_032242|PLXNA1|5361|plexin A1##X87832|PLXNA1|5361|plexin A1##BC017058|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##BC050711|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001136053|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AF289568|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##NM_001142646|TPRA1|131601|transmembrane protein, adipocyte asscociated 1##AK128291|MCM2|4171|minichromosome maintenance complex component 2##AK299934|MCM2|4171|minichromosome maintenance complex component 2##AK309335|MCM2|4171|minichromosome maintenance complex component 2##NM_004526|MCM2|4171|minichromosome maintenance complex component 2##BC014272|MCM2|4171|minichromosome maintenance complex component 2##BC007670|MCM2|4171|minichromosome maintenance complex component 2	0.0	0.0	
chr3	56956110	56956212	reg1009464.p1	3.827	+	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	-120250	-	AK293864 AB209661 NM_001128616	-146492	-	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-238954	-	AY221117 NM_181727 BC126274 BC136498	138342	+	AF433662 AK302493 NM_001128615	157152	-	AF458067 TSC_hg19_v1_chr3_-_57199347	243172	-	AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF458067|IL17RD|54756|interleukin 17 receptor D	0.943471	0.0	denovo_WM_7:-46:0.401	denovo_WM_7:-48:0.269
chr4	21091769	21091868	reg1013091.p1	3.827	+	DQ148492 AK294188 TSC_hg19_v1_chr4_-_20985711	-106189	-	TSC_hg19_v1_chr4_+_20702080 AK307786 NM_001130727 NM_145048 AK294077 AK297556 AK307355 AK315482 AK291544 AK307092	-389751	+	AB017168 NM_004787 BC117190 BC143978 AF133270	-836482	+	AY118170 DQ148489 NM_147183 AK290998	213751	-	DQ148491 NM_001035004	454460	-	BX648990 DQ148490 NM_001035003	607499	-	DQ148492|KCNIP4|80333|Kv channel interacting protein 4##AK294188|KCNIP4|80333|Kv channel interacting protein 4##AK307786|PACRGL|133015|PARK2 co-regulated-like##NM_001130727|PACRGL|133015|PARK2 co-regulated-like##NM_145048|PACRGL|133015|PARK2 co-regulated-like##AK294077|PACRGL|133015|PARK2 co-regulated-like##AK297556|PACRGL|133015|PARK2 co-regulated-like##AK307355|PACRGL|133015|PARK2 co-regulated-like##AK315482|PACRGL|133015|PARK2 co-regulated-like##AK291544|PACRGL|133015|PARK2 co-regulated-like##AK307092|PACRGL|133015|PARK2 co-regulated-like##AB017168|SLIT2|9353|slit homolog 2 (Drosophila)##NM_004787|SLIT2|9353|slit homolog 2 (Drosophila)##BC117190|SLIT2|9353|slit homolog 2 (Drosophila)##BC143978|SLIT2|9353|slit homolog 2 (Drosophila)##AF133270|SLIT2|9353|slit homolog 2 (Drosophila)##AY118170|KCNIP4|80333|Kv channel interacting protein 4##DQ148489|KCNIP4|80333|Kv channel interacting protein 4##NM_147183|KCNIP4|80333|Kv channel interacting protein 4##AK290998|KCNIP4|80333|Kv channel interacting protein 4##DQ148491|KCNIP4|80333|Kv channel interacting protein 4##NM_001035004|KCNIP4|80333|Kv channel interacting protein 4##BX648990|KCNIP4|80333|Kv channel interacting protein 4##DQ148490|KCNIP4|80333|Kv channel interacting protein 4##NM_001035003|KCNIP4|80333|Kv channel interacting protein 4	0.0	0.0	
chr5	63091963	63092039	reg1016322.p2	3.827	+	AK123022 NM_181506 BX649157 AY358733 BC110838 AY280614	-1217363	+	AK302781 NM_001134779	-1377291	+	TSC_hg19_v1_chr5_+_61708589 NM_016338 AK001696 BC033776	-1383377	+	AF498978 BC069159 NM_000524 AB464441 BC136263 TSC_hg19_v1_chr5_-_63257719 AK291429 AK311460	165661	-	AK314187 TSC_hg19_v1_chr5_-_63258084	166021	-	TSC_hg19_v1_chr5_+_63461666 AK090756 AX746601 NM_001113561 NM_178532 BC101277 BC101278 BC101279 AL832580 BC101397	369680	+	AK123022|LRRC70|100130733|leucine rich repeat containing 70##NM_181506|LRRC70|100130733|leucine rich repeat containing 70##AY358733|LRRC70|100130733|leucine rich repeat containing 70##BC110838|LRRC70|100130733|leucine rich repeat containing 70##AY280614|LRRC70|100130733|leucine rich repeat containing 70##AK302781|IPO11|51194|importin 11##NM_001134779|IPO11|51194|importin 11##NM_016338|IPO11|51194|importin 11##AK001696|IPO11|51194|importin 11##BC033776|IPO11|51194|importin 11##AF498978|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC069159|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##NM_000524|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##BC136263|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK291429|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK314187|HTR1A|3350|5-hydroxytryptamine (serotonin) receptor 1A##AK090756|RNF180|285671|ring finger protein 180##NM_001113561|RNF180|285671|ring finger protein 180##NM_178532|RNF180|285671|ring finger protein 180##BC101277|RNF180|285671|ring finger protein 180##BC101278|RNF180|285671|ring finger protein 180##BC101279|RNF180|285671|ring finger protein 180##AL832580|RNF180|285671|ring finger protein 180##BC101397|RNF180|285671|ring finger protein 180	0.413613	0.0	denovo_WM_7:43:0.319
chr7	21984069	21984249	reg1002718.p1	3.827	+	AJ320497 NM_003777	-401327	+	AB591008 TSC_hg19_v1_chr7_+_21468356	-515835	+	TSC_hg19_v1_chr7_+_21467717 AK289728 AK296749 NM_003112 X68561 BC109300 BC109301	-516340	+	AB463479 AY161168 AY161169 CU691768 CU692942 BC009352 TSC_hg19_v1_chr7_-_21985500 AK095965 BC025242 BC032576 AK300781 BC039823 AK022955 AK292490 NM_001127370 NM_001127371 NM_018719	1323	-	AL833195 NM_012294	412362	-	BC066301 TSC_hg19_v1_chr7_-_22539806 AK308991 NM_001164460 NM_207342	555688	-	AJ320497|DNAH11|8701|dynein, axonemal, heavy chain 11##NM_003777|DNAH11|8701|dynein, axonemal, heavy chain 11##AK289728|SP4|6671|Sp4 transcription factor##AK296749|SP4|6671|Sp4 transcription factor##NM_003112|SP4|6671|Sp4 transcription factor##X68561|SP4|6671|Sp4 transcription factor##BC109300|SP4|6671|Sp4 transcription factor##BC109301|SP4|6671|Sp4 transcription factor##AY161168|CDCA7L|55536|cell division cycle associated 7-like##AY161169|CDCA7L|55536|cell division cycle associated 7-like##BC009352|CDCA7L|55536|cell division cycle associated 7-like##AK095965|CDCA7L|55536|cell division cycle associated 7-like##BC025242|CDCA7L|55536|cell division cycle associated 7-like##BC032576|CDCA7L|55536|cell division cycle associated 7-like##AK300781|CDCA7L|55536|cell division cycle associated 7-like##BC039823|CDCA7L|55536|cell division cycle associated 7-like##AK022955|CDCA7L|55536|cell division cycle associated 7-like##AK292490|CDCA7L|55536|cell division cycle associated 7-like##NM_001127370|CDCA7L|55536|cell division cycle associated 7-like##NM_001127371|CDCA7L|55536|cell division cycle associated 7-like##NM_018719|CDCA7L|55536|cell division cycle associated 7-like##AL833195|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##NM_012294|RAPGEF5|9771|Rap guanine nucleotide exchange factor (GEF) 5##BC066301|STEAP1B|256227|STEAP family member 1B##AK308991|STEAP1B|256227|STEAP family member 1B##NM_001164460|STEAP1B|256227|STEAP family member 1B##NM_207342|STEAP1B|256227|STEAP family member 1B	1.183203	0.0	
chr7	3622472	3622538	reg1014066.p2	3.827	+	TSC_hg19_v1_chr7_+_3340924 AY310398 NM_152744	-281506	+	TSC_hg19_v1_chr7_-_3083346 AF322641 AK074049 NM_032415 AK097139	-539043	-	AK295830 AF493901 L01694 AB463060 TSC_hg19_v1_chr7_-_2883943 NM_007353 BC087537 BC111464	-738697	-	TSC_hg19_v1_chr7_+_4721925 NM_001037165	1099333	+	TSC_hg19_v1_chr7_+_4722091 AX721089 AK302243 AK122663	1099746	+	TSC_hg19_v1_chr7_+_4815264 NM_014855 BC037399	1192756	+	AY310398|SDK1|221935|sidekick cell adhesion molecule 1##NM_152744|SDK1|221935|sidekick cell adhesion molecule 1##AF322641|CARD11|84433|caspase recruitment domain family, member 11##AK074049|CARD11|84433|caspase recruitment domain family, member 11##NM_032415|CARD11|84433|caspase recruitment domain family, member 11##AK097139|CARD11|84433|caspase recruitment domain family, member 11##AK295830|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##AF493901|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##L01694|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_007353|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC087537|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##BC111464|GNA12|2768|guanine nucleotide binding protein (G protein) alpha 12##NM_001037165|FOXK1|221937|forkhead box K1##AK302243|FOXK1|221937|forkhead box K1##AK122663|FOXK1|221937|forkhead box K1##NM_014855|KIAA0415|9907|KIAA0415##BC037399|KIAA0415|9907|KIAA0415	0.0	0.0	
chr1	15929786	15929966	reg1010377.p1	3.826	+	DQ893530 DQ896746 TSC_hg19_v1_chr1_-_15911519 AY057097 AK027037 AK130034 AK225366 BC005090 NM_024758	-18336	-	TSC_hg19_v1_chr1_+_15853357 AK091848 AX747219 AB023179 NM_015291 CR749259 CR749567 AL833299 AK292479 BX648982	-76511	+	BC047363 TSC_hg19_v1_chr1_+_15853342	-76551	+	TSC_hg19_v1_chr1_+_15943952 AK293006 NM_032341	14076	+	TSC_hg19_v1_chr1_+_15944018 BC006011	14161	+	TSC_hg19_v1_chr1_+_15944063 CU675225	14235	+	DQ893530|AGMAT|79814|agmatine ureohydrolase (agmatinase)##DQ896746|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AY057097|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK130034|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK225366|AGMAT|79814|agmatine ureohydrolase (agmatinase)##BC005090|AGMAT|79814|agmatine ureohydrolase (agmatinase)##NM_024758|AGMAT|79814|agmatine ureohydrolase (agmatinase)##AK091848|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AB023179|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##NM_015291|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749259|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##CR749567|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AL833299|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK292479|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BX648982|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##BC047363|DNAJC16|23341|DnaJ (Hsp40) homolog, subfamily C, member 16##AK293006|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##NM_032341|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)##BC006011|DDI2|84301|DNA-damage inducible 1 homolog 2 (S. cerevisiae)	0.0	0.0	
chr1	200494940	200495075	reg1013135.p1	3.826	+	BC060820 NM_012482 TSC_hg19_v1_chr1_-_200379187 AK027284	-115813	-	TSC_hg19_v1_chr1_-_200379155 AK297233 AK022916 AK094701	-115890	-	AB384788 CU687444 AF125158 BC051905 TSC_hg19_v1_chr1_-_200378976	-116098	-	TSC_hg19_v1_chr1_-_200589869 D26361 NM_014875	94872	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	144022	-	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	144101	-	BC060820|ZNF281|23528|zinc finger protein 281##NM_012482|ZNF281|23528|zinc finger protein 281##AK027284|ZNF281|23528|zinc finger protein 281##AK297233|ZNF281|23528|zinc finger protein 281##AK022916|ZNF281|23528|zinc finger protein 281##AK094701|ZNF281|23528|zinc finger protein 281##AF125158|ZNF281|23528|zinc finger protein 281##BC051905|ZNF281|23528|zinc finger protein 281##D26361|KIF14|9928|kinesin family member 14##NM_014875|KIF14|9928|kinesin family member 14##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	0.977826	0.0	denovo_WM_7:-1:0.316	denovo_WM_7:-6:0.497
chr12	28530475	28530578	reg1015491.p2	3.826	+	AY289196 NM_018318 AB587421	-120386	+	TSC_hg19_v1_chr12_+_28343404 BC035168	-187115	+	NM_002820 NM_198965	-405611	-	AL136843 TSC_hg19_v1_chr12_+_29302210 AK001324 AK314670 BC018460	771666	+	TSC_hg19_v1_chr12_+_29376598 BC022267 NM_018099 AK027756 AK129857 AK001927	846145	+	TSC_hg19_v1_chr12_-_29534081 BC064522	1003549	-	AY289196|CCDC91|55297|coiled-coil domain containing 91##NM_018318|CCDC91|55297|coiled-coil domain containing 91##NM_002820|PTHLH|5744|parathyroid hormone-like hormone##NM_198965|PTHLH|5744|parathyroid hormone-like hormone##AL136843|FAR2|55711|fatty acyl CoA reductase 2##AK001324|FAR2|55711|fatty acyl CoA reductase 2##AK314670|FAR2|55711|fatty acyl CoA reductase 2##BC022267|FAR2|55711|fatty acyl CoA reductase 2##NM_018099|FAR2|55711|fatty acyl CoA reductase 2##AK027756|FAR2|55711|fatty acyl CoA reductase 2##AK129857|FAR2|55711|fatty acyl CoA reductase 2##AK001927|FAR2|55711|fatty acyl CoA reductase 2##BC064522|ERGIC2|51290|ERGIC and golgi 2	0.783672	0.0	denovo_WM_7:41:0.671
chr15	75625934	75626054	reg1000376.p1	3.826	+	AF263742 NM_001145224	-50816	+	AF263742 NM_001164404	-75096	+	TSC_hg19_v1_chr15_+_75494242 AF495726 BC011379 AK125604	-131751	+	NM_017828 AK225716 BC033744 AK000459 AK293708 AK057145 AK124968 AK314740 BC069195 BC068998 AL136872	2400	+	NM_024608 AK026055	13375	+	AB209141 TSC_hg19_v1_chr15_-_75660874	34867	-	AF263742|GOLGA6A|342096|golgin A6 family, member A##NM_001145224|GOLGA6D|653643|golgin A6 family, member D##AF263742|GOLGA6A|342096|golgin A6 family, member A##NM_001164404|GOLGA6C|653641|golgin A6 family, member C##AF495726|C15orf39|56905|chromosome 15 open reading frame 39##BC011379|C15orf39|56905|chromosome 15 open reading frame 39##AK125604|C15orf39|56905|chromosome 15 open reading frame 39##NM_017828|COMMD4|54939|COMM domain containing 4##AK225716|COMMD4|54939|COMM domain containing 4##BC033744|COMMD4|54939|COMM domain containing 4##AK000459|COMMD4|54939|COMM domain containing 4##AK293708|COMMD4|54939|COMM domain containing 4##AK057145|COMMD4|54939|COMM domain containing 4##AK314740|COMMD4|54939|COMM domain containing 4##BC069195|COMMD4|54939|COMM domain containing 4##BC068998|COMMD4|54939|COMM domain containing 4##AL136872|COMMD4|54939|COMM domain containing 4##NM_024608|NEIL1|79661|nei endonuclease VIII-like 1 (E. coli)##AK026055|NEIL1|79661|nei endonuclease VIII-like 1 (E. coli)##AB209141|MAN2C1|4123|mannosidase, alpha, class 2C, member 1	0.996311	0.0	denovo_WM_7:-85:0.925
chr16	46842864	46843022	reg1004438.p1	3.826	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-60781	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-119346	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-119378	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	22145	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	75338	+	NM_001142466 AK094971	76159	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.99288	0.0	
chr20	21117171	21117303	reg1011141.p1	3.826	+	TSC_hg19_v1_chr20_+_21106722 BC105093 BC113370 AK295355 BC045826	-10510	+	NM_001163022 NM_001163023 NM_018474 TSC_hg19_v1_chr20_+_21106657 AF451990 BC039296 AK293567 AK293166 AK025476	-10573	+	DQ310704 BC171842 TSC_hg19_v1_chr20_-_20693287 NM_020343	-424009	-	BC142960 TSC_hg19_v1_chr20_+_21283980 NM_012255 AK001573 AF064257 BC131775 AY382900 AK303312 AK314602 AL136841 AF152169 BC000315	166738	+	NM_033176 TSC_hg19_v1_chr20_-_21378181	260877	-	NM_002509	377426	-	BC105093|PLK1S1|55857|polo-like kinase 1 substrate 1##BC113370|PLK1S1|55857|polo-like kinase 1 substrate 1##AK295355|PLK1S1|55857|polo-like kinase 1 substrate 1##BC045826|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163022|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_001163023|PLK1S1|55857|polo-like kinase 1 substrate 1##NM_018474|PLK1S1|55857|polo-like kinase 1 substrate 1##AF451990|PLK1S1|55857|polo-like kinase 1 substrate 1##BC039296|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293567|PLK1S1|55857|polo-like kinase 1 substrate 1##AK293166|PLK1S1|55857|polo-like kinase 1 substrate 1##AK025476|PLK1S1|55857|polo-like kinase 1 substrate 1##DQ310704|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##BC171842|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##NM_020343|RALGAPA2|57186|Ral GTPase activating protein, alpha subunit 2 (catalytic)##BC142960|XRN2|22803|5'-3' exoribonuclease 2##NM_012255|XRN2|22803|5'-3' exoribonuclease 2##AK001573|XRN2|22803|5'-3' exoribonuclease 2##AF064257|XRN2|22803|5'-3' exoribonuclease 2##BC131775|XRN2|22803|5'-3' exoribonuclease 2##AY382900|XRN2|22803|5'-3' exoribonuclease 2##AK303312|XRN2|22803|5'-3' exoribonuclease 2##AK314602|XRN2|22803|5'-3' exoribonuclease 2##AL136841|XRN2|22803|5'-3' exoribonuclease 2##AF152169|XRN2|22803|5'-3' exoribonuclease 2##BC000315|XRN2|22803|5'-3' exoribonuclease 2##NM_033176|NKX2-4|644524|NK2 homeobox 4##NM_002509|NKX2-2|4821|NK2 homeobox 2	1.031001	0.0	denovo_WM_7:12:0.673
chr3	195802809	195802914	reg1012010.p1	3.826	+	TSC_hg19_v1_chr3_-_195717156 BC071730 AK300421 AK316025 AK299148	-85730	-	NM_005781 L13738	-166945	-	AK131539 NM_001010938	-180430	-	TSC_hg19_v1_chr3_-_195808954 AB209254 X01060 BC001188	6083	-	TSC_hg19_v1_chr3_-_195808962 AK291723 AK309923 BX537966 NM_003234 AK294758	6100	-	TSC_hg19_v1_chr3_-_195808984 M11507	6122	-	BC071730|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##AK316025|SDHAP2|727956|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2##AK299148|SDHAP1|255812|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1##NM_005781|TNK2|10188|tyrosine kinase, non-receptor, 2##L13738|TNK2|10188|tyrosine kinase, non-receptor, 2##AK131539|TNK2|10188|tyrosine kinase, non-receptor, 2##NM_001010938|TNK2|10188|tyrosine kinase, non-receptor, 2##AB209254|TFRC|7037|transferrin receptor (p90, CD71)##X01060|TFRC|7037|transferrin receptor (p90, CD71)##BC001188|TFRC|7037|transferrin receptor (p90, CD71)##AK291723|TFRC|7037|transferrin receptor (p90, CD71)##AK309923|TFRC|7037|transferrin receptor (p90, CD71)##BX537966|TFRC|7037|transferrin receptor (p90, CD71)##NM_003234|TFRC|7037|transferrin receptor (p90, CD71)##AK294758|TFRC|7037|transferrin receptor (p90, CD71)##M11507|TFRC|7037|transferrin receptor (p90, CD71)	0.98222	0.0	denovo_WM_7:-9:0.372	denovo_WM_7:-12:0.379
chr3	72476856	72476955	reg1016368.p1	3.826	+	AF182069 AY349131 AF333025 BC069395 BC096695 BC098110 BC098162 NM_001126128 NM_021935	-642634	-	AK313656 NM_173359	-672982	-	TSC_hg19_v1_chr3_-_71803513 NM_001134649	-673383	-	TSC_hg19_v1_chr3_-_72897563 BC039830 BC047879 AK092962	420643	-	BC017274 TSC_hg19_v1_chr3_-_72897575	420670	-	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	420687	-	AF182069|PROK2|60675|prokineticin 2##AY349131|PROK2|60675|prokineticin 2##AF333025|PROK2|60675|prokineticin 2##BC069395|PROK2|60675|prokineticin 2##BC096695|PROK2|60675|prokineticin 2##BC098110|PROK2|60675|prokineticin 2##BC098162|PROK2|60675|prokineticin 2##NM_001126128|PROK2|60675|prokineticin 2##NM_021935|PROK2|60675|prokineticin 2##AK313656|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_173359|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##NM_001134649|EIF4E3|317649|eukaryotic translation initiation factor 4E family member 3##BC039830|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC047879|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK092962|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)	0.98202	0.0	denovo_WM_7:-15:0.982
chr4	65499631	65499707	reg1018989.p1	3.826	+	AX771275 AX771283 AX771273 BX647590 AX771281 AX771280 AK290606 AX771274 BC072463 AL833108 NM_001010874 AX771267 AX771272	-224573	-	NM_015236	-3136831	+	TSC_hg19_v1_chr4_+_62066948 AK309793	-3432694	+	AK307826 NM_004439 NM_182472	1035983	-	TSC_hg19_v1_chr4_-_66536182 AB209375	1036528	-	CU688992 TSC_hg19_v1_chr4_-_68411171	2911454	-	BX647590|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##AK290606|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##BC072463|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##AL833108|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##NM_001010874|TECRL|253017|trans-2,3-enoyl-CoA reductase-like##NM_015236|LPHN3|23284|latrophilin 3##AK309793|LPHN3|23284|latrophilin 3##AK307826|EPHA5|2044|EPH receptor A5##NM_004439|EPHA5|2044|EPH receptor A5##NM_182472|EPHA5|2044|EPH receptor A5##AB209375|EPHA5|2044|EPH receptor A5	0.0	0.0	
chr5	159886198	159886318	reg1014103.p1	3.826	+	TSC_hg19_v1_chr5_+_159848929 BC101834 BC112071 AF075242	-37355	+	AK312209 AF062649 TSC_hg19_v1_chr5_+_159848864 BC026003 NM_004219 AF095287	-37404	+	TSC_hg19_v1_chr5_-_159846086 AY486334 AK314564 AK024875 BC010634 NM_006425	-40153	-	AK025130 TSC_hg19_v1_chr5_-_160112393	226081	-	AB018258 AK295081 AK090832 AX746642 NM_025153	392873	-	BC099705 BC099719 BC105639 NM_000813 NM_021911 S67368	1088868	-	BC101834|PTTG1|9232|pituitary tumor-transforming 1##BC112071|PTTG1|9232|pituitary tumor-transforming 1##AF075242|PTTG1|9232|pituitary tumor-transforming 1##AK312209|PTTG1|9232|pituitary tumor-transforming 1##AF062649|PTTG1|9232|pituitary tumor-transforming 1##BC026003|PTTG1|9232|pituitary tumor-transforming 1##NM_004219|PTTG1|9232|pituitary tumor-transforming 1##AF095287|PTTG1|9232|pituitary tumor-transforming 1##AY486334|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK314564|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK024875|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##BC010634|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##NM_006425|SLU7|10569|SLU7 splicing factor homolog (S. cerevisiae)##AK025130|ATP10B|23120|ATPase, class V, type 10B##AB018258|ATP10B|23120|ATPase, class V, type 10B##AK295081|ATP10B|23120|ATPase, class V, type 10B##AK090832|ATP10B|23120|ATPase, class V, type 10B##NM_025153|ATP10B|23120|ATPase, class V, type 10B##BC099705|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC099719|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##BC105639|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_000813|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##NM_021911|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2##S67368|GABRB2|2561|gamma-aminobutyric acid (GABA) A receptor, beta 2	0.0	0.0	
chr10	21778165	21778287	reg1017545.p1	3.825	+	TSC_hg19_v1_chr10_-_21463021 BC126132 BC126134 BC144201 AJ580772 NM_001173484 NM_213569	-315159	-	AB209311 TSC_hg19_v1_chr10_-_21462987	-315239	-	BC140744 BC144447 NM_001010896 NM_001177483	-342739	-	BC130594 BC132974 TSC_hg19_v1_chr10_-_21785960	7706	-	TSC_hg19_v1_chr10_-_21786190 BC040880	7965	-	TSC_hg19_v1_chr10_-_21786207 NM_001010911	7999	-	BC126132|NEBL|10529|nebulette##BC126134|NEBL|10529|nebulette##BC144201|NEBL|10529|nebulette##AJ580772|NEBL|10529|nebulette##NM_001173484|NEBL|10529|nebulette##NM_213569|NEBL|10529|nebulette##AB209311|NEBL|10529|nebulette##BC140744|C10orf113|387638|chromosome 10 open reading frame 113##BC144447|C10orf113|387638|chromosome 10 open reading frame 113##NM_001010896|C10orf113|387638|chromosome 10 open reading frame 113##NM_001177483|C10orf113|387638|chromosome 10 open reading frame 113##BC130594|C10orf114|399726|chromosome 10 open reading frame 114##BC132974|C10orf114|399726|chromosome 10 open reading frame 114##BC040880|C10orf114|399726|chromosome 10 open reading frame 114##NM_001010911|C10orf114|399726|chromosome 10 open reading frame 114	0.776086	0.0	denovo_WM_7:26:0.700
chr14	21737625	21737750	reg1017592.p1	3.825	+	M16342 BC108658 BX247992 BC089438 BC008364 TSC_hg19_v1_chr14_-_21737587 BC003394 BC071943 BX247961 M29063 AB209527 AK223517 BC066932 AK298906 AK312382 D28382 AK297482 AK299923 AK312338 BC103758 AK292619 BC007052 BC008423 AL833432 BC092433 AK225032 AK302213 NM_001077442 NM_001077443 NM_004500 NM_031314	-116	-	NM_001004731 BC137304 BC137305	-113485	-	TSC_hg19_v1_chr14_-_21572798 NM_001102454	-164862	-	AJ417067 NM_020366	18448	+	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	114435	-	BC000565 BC014046 TSC_hg19_v1_chr14_-_21852177 BC021561 BC111402	114482	-	M16342|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC108658|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247992|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC089438|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008364|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC003394|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC071943|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247961|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##M29063|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AB209527|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK223517|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC066932|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK298906|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##D28382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK297482|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK299923|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312338|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC103758|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK292619|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC007052|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008423|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AL833432|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC092433|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK225032|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK302213|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077442|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077443|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_004500|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_031314|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001004731|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137304|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137305|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##NM_001102454|ZNF219|51222|zinc finger protein 219##AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC000565|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC014046|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC111402|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)	0.0	0.0	
chr18	43690083	43690262	reg1017582.p1	3.825	+	AY360137 NM_138443 AK097403 TSC_hg19_v1_chr18_+_43684350 BC014003 AK315605 BC005958 AB463535	-5835	+	NM_001001937	-5974	-	TSC_hg19_v1_chr18_-_43678288 AK310051 NM_004046	-11891	-	TSC_hg19_v1_chr18_+_43754002 NM_001008239 NM_145055 AK292981	63822	+	TSC_hg19_v1_chr18_+_43754007 BC084579	63843	+	TSC_hg19_v1_chr18_+_43754065 AK289738	63910	+	AY360137|HAUS1|115106|HAUS augmin-like complex, subunit 1##NM_138443|HAUS1|115106|HAUS augmin-like complex, subunit 1##AK097403|HAUS1|115106|HAUS augmin-like complex, subunit 1##BC014003|HAUS1|115106|HAUS augmin-like complex, subunit 1##AK315605|HAUS1|115106|HAUS augmin-like complex, subunit 1##BC005958|HAUS1|115106|HAUS augmin-like complex, subunit 1##NM_001001937|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##AK310051|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##NM_004046|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##NM_001008239|C18orf25|147339|chromosome 18 open reading frame 25##NM_145055|C18orf25|147339|chromosome 18 open reading frame 25##AK292981|C18orf25|147339|chromosome 18 open reading frame 25##BC084579|C18orf25|147339|chromosome 18 open reading frame 25##AK289738|C18orf25|147339|chromosome 18 open reading frame 25	0.998666	0.0	
chr19	40991863	40991971	reg1019655.p2	3.825	+	AF082075 AF311855 NM_020971	-18830	+	TSC_hg19_v1_chr19_-_40971653 BC109371 AK312137 D26308 NM_000713	-20242	-	TSC_hg19_v1_chr19_-_40950243 BC050643 NM_203344	-41658	-	TSC_hg19_v1_chr19_+_41036379 AF311856 NM_025213	44463	+	TSC_hg19_v1_chr19_+_41036433 AK309418	44514	+	TSC_hg19_v1_chr19_+_41082760 NM_138392 AF258553 AK075057 AK300819	90832	+	AF082075|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##AF311855|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##NM_020971|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##BC109371|BLVRB|645|biliverdin reductase B (flavin reductase (NADPH))##AK312137|BLVRB|645|biliverdin reductase B (flavin reductase (NADPH))##D26308|BLVRB|645|biliverdin reductase B (flavin reductase (NADPH))##NM_000713|BLVRB|645|biliverdin reductase B (flavin reductase (NADPH))##BC050643|SERTAD3|29946|SERTA domain containing 3##NM_203344|SERTAD3|29946|SERTA domain containing 3##AF311856|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##NM_025213|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##AK309418|SPTBN4|57731|spectrin, beta, non-erythrocytic 4##NM_138392|SHKBP1|92799|SH3KBP1 binding protein 1##AF258553|SHKBP1|92799|SH3KBP1 binding protein 1##AK075057|SHKBP1|92799|SH3KBP1 binding protein 1##AK300819|SHKBP1|92799|SH3KBP1 binding protein 1	0.994695	0.017039	denovo_WM_7:-23:0.834
chr2	55450811	55450960	reg1012163.p1	3.825	+	TSC_hg19_v1_chr2_-_55277709 AY123246 NM_020532 NM_153828 NM_207520	-173170	-	TSC_hg19_v1_chr2_-_55277672 AB040462 AB040463 AY102277 AY102278 AY102279 BC016165 BC068991 BC150182 BC152555	-173203	-	TSC_hg19_v1_chr2_-_55277661 AK075039	-173223	-	NM_001135592	8153	+	AK315683 TSC_hg19_v1_chr2_-_55459408 AK056000 BC029502 NM_152385	8542	-	NM_002954	8655	+	AY123246|RTN4|57142|reticulon 4##NM_020532|RTN4|57142|reticulon 4##NM_153828|RTN4|57142|reticulon 4##NM_207520|RTN4|57142|reticulon 4##AB040462|RTN4|57142|reticulon 4##AB040463|RTN4|57142|reticulon 4##AY102277|RTN4|57142|reticulon 4##AY102278|RTN4|57142|reticulon 4##AY102279|RTN4|57142|reticulon 4##BC016165|RTN4|57142|reticulon 4##BC068991|RTN4|57142|reticulon 4##BC150182|RTN4|57142|reticulon 4##BC152555|RTN4|57142|reticulon 4##AK075039|RTN4|57142|reticulon 4##NM_001135592|RPS27A|6233|ribosomal protein S27a##AK315683|C2orf63|130162|chromosome 2 open reading frame 63##AK056000|C2orf63|130162|chromosome 2 open reading frame 63##BC029502|C2orf63|130162|chromosome 2 open reading frame 63##NM_152385|C2orf63|130162|chromosome 2 open reading frame 63##NM_002954|RPS27A|6233|ribosomal protein S27a	0.993913	0.0	denovo_WM_7:57:0.981
chr7	1978054	1978155	reg1015991.p1	3.825	+	NM_001128636	-229307	+	TSC_hg19_v1_chr7_+_1609777 BX538028 BC036405 BC047649	-368283	+	AB067495 TSC_hg19_v1_chr7_+_1609735	-368371	+	TSC_hg19_v1_chr7_-_1980177 BC018870	2059	-	AK310481 TSC_hg19_v1_chr7_-_2272542	294431	-	TSC_hg19_v1_chr7_-_2272559 AF083811	294456	-	NM_001128636|ELFN1|392617|extracellular leucine-rich repeat and fibronectin type III domain containing 1##BX538028|KIAA1908|114796|uncharacterized LOC114796##BC036405|KIAA1908|114796|uncharacterized LOC114796##BC047649|KIAA1908|114796|uncharacterized LOC114796##AB067495|KIAA1908|114796|uncharacterized LOC114796##BC018870|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310481|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AF083811|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)	0.999132	0.0	denovo_WM_7:-52:0.873
chr16	85483629	85483717	reg1015872.p1	3.824	+	BC093665 BC111944 AK126284 NM_198491	-337619	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-422303	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-438544	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	161348	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	163280	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	238869	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.999494	0.0	
chr19	19498076	19498162	reg1017273.p2	3.824	+	TSC_hg19_v1_chr19_+_19496634 NM_017660 AK303482	-1413	+	TSC_hg19_v1_chr19_+_19431662 AB385396	-66455	+	TSC_hg19_v1_chr19_+_19431637 NM_015329 AB020699	-66485	+	AB464723 DQ891603 DQ894797 AF329483 AK058166 AK313767 BC014611 NM_032037 AF348077	128246	-	TSC_hg19_v1_chr19_+_19626536 AF261134	128446	+	NM_015965 TSC_hg19_v1_chr19_+_19627033 BC009189 AK298891 AK293859 AK293965 BC000589 AF286697	128917	+	NM_017660|GATAD2A|54815|GATA zinc finger domain containing 2A##AK303482|GATAD2A|54815|GATA zinc finger domain containing 2A##NM_015329|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##AB020699|MAU2|23383|MAU2 chromatid cohesion factor homolog (C. elegans)##DQ891603|TSSK6|83983|testis-specific serine kinase 6##DQ894797|TSSK6|83983|testis-specific serine kinase 6##AF329483|TSSK6|83983|testis-specific serine kinase 6##AK058166|TSSK6|83983|testis-specific serine kinase 6##AK313767|TSSK6|83983|testis-specific serine kinase 6##BC014611|TSSK6|83983|testis-specific serine kinase 6##NM_032037|TSSK6|83983|testis-specific serine kinase 6##AF348077|TSSK6|83983|testis-specific serine kinase 6##AF261134|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##NM_015965|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC009189|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AK293859|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##BC000589|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13##AF286697|NDUFA13|51079|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	0.996188	0.0	denovo_WM_7:19:0.825
chr19	45621904	45622077	reg1000740.p1	3.824	+	TSC_hg19_v1_chr19_+_45596436 NM_019121	-25568	+	TSC_hg19_v1_chr19_+_45596205 BC035704	-25775	+	TSC_hg19_v1_chr19_+_45582529 NM_001007270 NM_001007269 NM_024707 AK024018 BC007793	-39477	+	NM_198478	41417	-	TSC_hg19_v1_chr19_-_45681496 FJ418644 BC001907 NM_024108 BC004450 AF161407	59488	-	NM_212550 AK296695 TSC_hg19_v1_chr19_+_45682022	60023	+	NM_019121|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37##BC035704|PPP1R37|284352|protein phosphatase 1, regulatory subunit 37##NM_001007270|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_001007269|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_024707|GEMIN7|79760|gem (nuclear organelle) associated protein 7##AK024018|GEMIN7|79760|gem (nuclear organelle) associated protein 7##BC007793|GEMIN7|79760|gem (nuclear organelle) associated protein 7##NM_198478|NKPD1|284353|NTPase, KAP family P-loop domain containing 1##FJ418644|TRAPPC6A|79090|trafficking protein particle complex 6A##BC001907|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_024108|TRAPPC6A|79090|trafficking protein particle complex 6A##BC004450|TRAPPC6A|79090|trafficking protein particle complex 6A##AF161407|TRAPPC6A|79090|trafficking protein particle complex 6A##NM_212550|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3##AK296695|BLOC1S3|388552|biogenesis of lysosomal organelles complex-1, subunit 3	0.0	0.0	
chr19	5926983	5927105	reg1006277.p1	3.824	+	AK226026 NM_004058 NM_080590 BC080599 BC019065 BC101513 BC104766 X97966 BC011961	-12703	+	TSC_hg19_v1_chr19_+_5904884 NM_001017921 AK124162 BC110802	-22175	+	TSC_hg19_v1_chr19_-_5903991 NM_001193375 NM_175614	-23037	-	CU678680 DQ234346 AK308205 TSC_hg19_v1_chr19_-_5978122 BC004349 AL050149 AK222813 AK301942 Y08698 AK222990	51068	-	AK025300 AK299260 AK314343 TSC_hg19_v1_chr19_-_5978152	51107	-	AK299856 TSC_hg19_v1_chr19_-_5978306 NM_003624 NM_007320 NM_007322	51240	-	AK226026|CAPS|828|calcyphosine##NM_004058|CAPS|828|calcyphosine##NM_080590|CAPS|828|calcyphosine##BC080599|CAPS|828|calcyphosine##BC019065|CAPS|828|calcyphosine##BC101513|CAPS|828|calcyphosine##BC104766|CAPS|828|calcyphosine##X97966|CAPS|828|calcyphosine##BC011961|CAPS|828|calcyphosine##NM_001017921|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##AK124162|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##BC110802|VMAC|400673|vimentin-type intermediate filament associated coiled-coil protein##NM_001193375|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##NM_175614|NDUFA11|126328|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa##DQ234346|RANBP3|8498|RAN binding protein 3##AK308205|RANBP3|8498|RAN binding protein 3##BC004349|RANBP3|8498|RAN binding protein 3##AL050149|RANBP3|8498|RAN binding protein 3##AK222813|RANBP3|8498|RAN binding protein 3##AK301942|RANBP3|8498|RAN binding protein 3##Y08698|RANBP3|8498|RAN binding protein 3##AK222990|RANBP3|8498|RAN binding protein 3##AK025300|RANBP3|8498|RAN binding protein 3##AK299260|RANBP3|8498|RAN binding protein 3##AK314343|RANBP3|8498|RAN binding protein 3##AK299856|RANBP3|8498|RAN binding protein 3##NM_003624|RANBP3|8498|RAN binding protein 3##NM_007320|RANBP3|8498|RAN binding protein 3##NM_007322|RANBP3|8498|RAN binding protein 3	0.0	0.0	
chr5	115968618	115968709	reg1006922.p1	3.824	+	TSC_hg19_v1_chr5_-_115910520 AF279656 NM_020796 BC032619	-58149	-	TSC_hg19_v1_chr5_+_115898220 D28352	-70439	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	-547942	+	TSC_hg19_v1_chr5_-_118324243 BC114508 BC114955 AK091296 AX746901 NM_173666	2355575	-	TSC_hg19_v1_chr5_+_118406803 AB593142 BC028004	2438148	+	TSC_hg19_v1_chr5_+_118407076 NM_005509 AJ005821 BC144537 BC150616 BC171784 AB385168	2438502	+	AF279656|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##NM_020796|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##BC032619|SEMA6A|57556|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10##BC114508|DTWD2|285605|DTW domain containing 2##BC114955|DTWD2|285605|DTW domain containing 2##AK091296|DTWD2|285605|DTW domain containing 2##NM_173666|DTWD2|285605|DTW domain containing 2##AB593142|DMXL1|1657|Dmx-like 1##BC028004|DMXL1|1657|Dmx-like 1##NM_005509|DMXL1|1657|Dmx-like 1##AJ005821|DMXL1|1657|Dmx-like 1##BC144537|DMXL1|1657|Dmx-like 1##BC150616|DMXL1|1657|Dmx-like 1##BC171784|DMXL1|1657|Dmx-like 1	0.0	0.0	
chr7	26726104	26726217	reg1014153.p1	3.824	+	AK093321 AX748054 NM_001145531	-48671	+	TSC_hg19_v1_chr7_+_26438248 AK056484	-287898	+	AK309162 NM_001199838	-322216	+	AF072166 AJ004886 AB528968 DQ892896 DQ896144 AB014486 TSC_hg19_v1_chr7_-_26904210 BC002893 AK222885 AK313209 BC036044 AF051323 NM_003930	178033	-	S79869 S79871 S79910 U37431 AB464569 CU689416 DQ890884 DQ894038 U10421 AK308067 BC032547 AK313514 NM_005522 NM_153620	409414	-	TSC_hg19_v1_chr7_+_27135786 BC031342	409625	+	AK093321|C7orf71|285941|chromosome 7 open reading frame 71##NM_001145531|C7orf71|285941|chromosome 7 open reading frame 71##AK056484|LOC441204|441204|uncharacterized LOC441204##AK309162|SNX10|29887|sorting nexin 10##NM_001199838|SNX10|29887|sorting nexin 10##AF072166|SKAP2|8935|src kinase associated phosphoprotein 2##AJ004886|SKAP2|8935|src kinase associated phosphoprotein 2##DQ892896|SKAP2|8935|src kinase associated phosphoprotein 2##DQ896144|SKAP2|8935|src kinase associated phosphoprotein 2##AB014486|SKAP2|8935|src kinase associated phosphoprotein 2##BC002893|SKAP2|8935|src kinase associated phosphoprotein 2##AK222885|SKAP2|8935|src kinase associated phosphoprotein 2##AK313209|SKAP2|8935|src kinase associated phosphoprotein 2##BC036044|SKAP2|8935|src kinase associated phosphoprotein 2##AF051323|SKAP2|8935|src kinase associated phosphoprotein 2##NM_003930|SKAP2|8935|src kinase associated phosphoprotein 2##S79869|HOXA1|3198|homeobox A1##S79871|HOXA1|3198|homeobox A1##S79910|HOXA1|3198|homeobox A1##U37431|HOXA1|3198|homeobox A1##DQ890884|HOXA1|3198|homeobox A1##DQ894038|HOXA1|3198|homeobox A1##U10421|HOXA1|3198|homeobox A1##AK308067|HOXA1|3198|homeobox A1##BC032547|HOXA1|3198|homeobox A1##AK313514|HOXA1|3198|homeobox A1##NM_005522|HOXA1|3198|homeobox A1##NM_153620|HOXA1|3198|homeobox A1##BC031342|HOTAIRM1|100506311|HOXA transcript antisense RNA, myeloid-specific 1 (non-protein coding)	0.045484	0.98958	CTCF.p2:8:0.990
chr13	31191964	31192099	reg1015945.p2	3.823	+	NM_005800 BC038103 TSC_hg19_v1_chr13_+_31192056 BC036027 AK289826 CR627370 X59131 BC012594 AL832776	-68	+	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	-404	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	-151973	-	AK314143 NM_001204406	95583	+	NM_001629 TSC_hg19_v1_chr13_+_31309681	117633	+	TSC_hg19_v1_chr13_+_31309712 BC018538 DQ891647 DQ894836 AB590814 CU676260	117684	+	NM_005800|USPL1|10208|ubiquitin specific peptidase like 1##BC038103|USPL1|10208|ubiquitin specific peptidase like 1##BC036027|USPL1|10208|ubiquitin specific peptidase like 1##AK289826|USPL1|10208|ubiquitin specific peptidase like 1##CR627370|USPL1|10208|ubiquitin specific peptidase like 1##X59131|USPL1|10208|ubiquitin specific peptidase like 1##BC012594|USPL1|10208|ubiquitin specific peptidase like 1##AL832776|USPL1|10208|ubiquitin specific peptidase like 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##AK314143|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001204406|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##NM_001629|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##BC018538|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ891647|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein##DQ894836|ALOX5AP|241|arachidonate 5-lipoxygenase-activating protein	0.0	0.0	
chr13	69093154	69093334	reg1019156.p1	3.823	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	-1288740	-	AK289924 NM_022843	-7103590	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-7103991	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	1589297	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	3347015	-	TSC_hg19_v1_chr13_-_72440621 AJ005670 AL079278	3347519	-	BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)##AJ005670|DACH1|1602|dachshund homolog 1 (Drosophila)##AL079278|DACH1|1602|dachshund homolog 1 (Drosophila)	0.0	0.0	
chr20	18184134	18184280	reg1019731.p1	3.823	+	NM_020536 BC007537	-61292	+	TSC_hg19_v1_chr20_+_18118516 NM_001164811 AY358666	-65675	+	AK022284 NM_021220 BC006148	-145685	-	BC001887 NM_001083330 NM_003434 TSC_hg19_v1_chr20_+_18269170 AK295273 AK295513 AK291389 AK316386 AK294263 AK313525	84960	+	TSC_hg19_v1_chr20_-_18447678 CR749327 BC036231 BC130341 BC144153 AK295073 AK055544 AK299746 NM_001099407	263518	-	TSC_hg19_v1_chr20_+_18448037 BC012588 BC016761 NM_006466 AK314838 AK096684 AK223298 AK290892 U93869 AB464048 DQ892695 DQ896169	263882	+	NM_020536|CSRP2BP|57325|CSRP2 binding protein##BC007537|CSRP2BP|57325|CSRP2 binding protein##NM_001164811|PET117|100303755|cytochrome c oxidase assembly factor-like##AY358666|PET117|100303755|cytochrome c oxidase assembly factor-like##AK022284|OVOL2|58495|ovo-like 2 (Drosophila)##NM_021220|OVOL2|58495|ovo-like 2 (Drosophila)##BC006148|OVOL2|58495|ovo-like 2 (Drosophila)##BC001887|ZNF133|7692|zinc finger protein 133##NM_001083330|ZNF133|7692|zinc finger protein 133##NM_003434|ZNF133|7692|zinc finger protein 133##AK295273|ZNF133|7692|zinc finger protein 133##AK295513|ZNF133|7692|zinc finger protein 133##AK291389|ZNF133|7692|zinc finger protein 133##AK316386|ZNF133|7692|zinc finger protein 133##AK294263|ZNF133|7692|zinc finger protein 133##AK313525|ZNF133|7692|zinc finger protein 133##CR749327|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC036231|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC130341|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC144153|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##AK295073|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##AK055544|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##AK299746|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##NM_001099407|DZANK1|55184|double zinc ribbon and ankyrin repeat domains 1##BC012588|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##BC016761|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##NM_006466|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK314838|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK096684|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK223298|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##AK290892|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##U93869|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##DQ892695|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa##DQ896169|POLR3F|10621|polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa	0.998164	0.0	denovo_WM_7:49:0.479	denovo_WM_7:50:0.427
chr2	61100592	61100665	reg1016651.p1	3.823	+	TSC_hg19_v1_chr2_+_60983397 NM_022894 AF312211 BX647824 BC016738 AK314663 BC068493 BC110906 AK021867 BC111701 BC113747 AY029162 AJ308101 AK023544	-117144	+	AF080216 TSC_hg19_v1_chr2_-_60780784	-319850	-	AY692278 CU676818 AB384297 EU446622 EU446808 BC021098 TSC_hg19_v1_chr2_-_60780520 AB058712 AK297507 AY228763 AJ404611 AJ404612 AJ404613 AK055251 NM_018014 NM_022893 NM_138559 AK300012	-320106	-	TSC_hg19_v1_chr2_+_61108702 AK303926	8077	+	TSC_hg19_v1_chr2_+_61108741 BC051005 NM_002908	8109	+	TSC_hg19_v1_chr2_+_61108776 BC143885 BC117191 X75042	8159	+	NM_022894|PAPOLG|64895|poly(A) polymerase gamma##AF312211|PAPOLG|64895|poly(A) polymerase gamma##BX647824|PAPOLG|64895|poly(A) polymerase gamma##BC016738|PAPOLG|64895|poly(A) polymerase gamma##AK314663|PAPOLG|64895|poly(A) polymerase gamma##BC068493|PAPOLG|64895|poly(A) polymerase gamma##BC110906|PAPOLG|64895|poly(A) polymerase gamma##AK021867|PAPOLG|64895|poly(A) polymerase gamma##BC111701|PAPOLG|64895|poly(A) polymerase gamma##BC113747|PAPOLG|64895|poly(A) polymerase gamma##AY029162|PAPOLG|64895|poly(A) polymerase gamma##AJ308101|PAPOLG|64895|poly(A) polymerase gamma##AK023544|PAPOLG|64895|poly(A) polymerase gamma##AF080216|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY692278|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446622|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##EU446808|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##BC021098|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AB058712|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK297507|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AY228763|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404611|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404612|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AJ404613|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK055251|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_018014|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_022893|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##NM_138559|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK300012|BCL11A|53335|B-cell CLL/lymphoma 11A (zinc finger protein)##AK303926|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC051005|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##NM_002908|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC143885|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##BC117191|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)##X75042|REL|5966|v-rel reticuloendotheliosis viral oncogene homolog (avian)	0.0	0.0	
chr6	7053505	7053610	reg1019472.p1	3.823	+	BC039678 TSC_hg19_v1_chr6_+_6725205	-328396	+	NM_004271 BC038846 TSC_hg19_v1_chr6_+_6588949 AF057178 CU691612 AY931019	-464607	+	TSC_hg19_v1_chr6_-_6320897 NM_000129	-732647	-	TSC_hg19_v1_chr6_+_7107801 D49835 NM_001168344	54269	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	54478	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	54666	+	NM_004271|LY86|9450|lymphocyte antigen 86##BC038846|LY86|9450|lymphocyte antigen 86##AF057178|LY86|9450|lymphocyte antigen 86##AY931019|LY86|9450|lymphocyte antigen 86##NM_000129|F13A1|2162|coagulation factor XIII, A1 polypeptide##D49835|RREB1|6239|ras responsive element binding protein 1##NM_001168344|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1	1.983981	0.0	denovo_WM_7:75:0.722	denovo_WM_7:-94:0.973
chr16	15737777	15737901	reg1005364.p2	3.822	+	BC033900 NM_001143979	-716	+	BC137165 BC137170 BC144514 BC144515 TSC_hg19_v1_chr16_-_15737004 AK302667 AK095840 BC064914 NM_001184998 NM_001184999 NM_014647	-846	-	BC023603 NM_001142469	-141717	+	NM_017668 BC001421 TSC_hg19_v1_chr16_+_15744101 AK000108 AK025815	6268	+	BX641087 TSC_hg19_v1_chr16_-_15833973	96116	-	TSC_hg19_v1_chr16_-_15835382 D10667	97608	-	BC033900|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##NM_001143979|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC137165|KIAA0430|9665|KIAA0430##BC137170|KIAA0430|9665|KIAA0430##BC144514|KIAA0430|9665|KIAA0430##BC144515|KIAA0430|9665|KIAA0430##AK302667|KIAA0430|9665|KIAA0430##AK095840|KIAA0430|9665|KIAA0430##BC064914|KIAA0430|9665|KIAA0430##NM_001184998|KIAA0430|9665|KIAA0430##NM_001184999|KIAA0430|9665|KIAA0430##NM_014647|KIAA0430|9665|KIAA0430##BC023603|C16orf45|89927|chromosome 16 open reading frame 45##NM_001142469|C16orf45|89927|chromosome 16 open reading frame 45##NM_017668|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BC001421|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK000108|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##AK025815|NDE1|54820|nudE nuclear distribution gene E homolog 1 (A. nidulans)##BX641087|MYH11|4629|myosin, heavy chain 11, smooth muscle##D10667|MYH11|4629|myosin, heavy chain 11, smooth muscle	0.845413	0.0	denovo_WM_7:8:0.762
chr16	81034204	81034379	reg1015239.p2	3.822	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	-196244	-	AF125108 NM_130897 BC054892 BC035232	-459403	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1399676	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	5793	+	TSC_hg19_v1_chr16_+_81040132 BC007334	5852	+	TSC_hg19_v1_chr16_-_81040491 AF201935 BC032631 NM_020188	6179	-	AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N##AF201935|C16orf61|56942|chromosome 16 open reading frame 61##BC032631|C16orf61|56942|chromosome 16 open reading frame 61##NM_020188|C16orf61|56942|chromosome 16 open reading frame 61	0.0	0.0	
chr19	4078918	4079040	reg1013441.p1	3.822	+	BC113511 TSC_hg19_v1_chr19_-_4066828 AF000561 NM_015898 BC064505	-12162	-	TSC_hg19_v1_chr19_-_4065504 BC084568	-13483	-	TSC_hg19_v1_chr19_+_4007733 BC066895 AK022481 BC029874 NM_015897 AK222726 AB464092 AF077952 DQ892419 DQ895633 BC010047	-71250	+	TSC_hg19_v1_chr19_-_4103205 AK093125	24233	-	AB463893 DQ893601 DQ895060 L11285 BC018645 TSC_hg19_v1_chr19_-_4124114 BX538081	45013	-	TSC_hg19_v1_chr19_-_4124145 BC000471 NM_030662	45154	-	BC113511|ZBTB7A|51341|zinc finger and BTB domain containing 7A##AF000561|ZBTB7A|51341|zinc finger and BTB domain containing 7A##NM_015898|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC084568|ZBTB7A|51341|zinc finger and BTB domain containing 7A##BC066895|PIAS4|51588|protein inhibitor of activated STAT, 4##AK022481|PIAS4|51588|protein inhibitor of activated STAT, 4##BC029874|PIAS4|51588|protein inhibitor of activated STAT, 4##NM_015897|PIAS4|51588|protein inhibitor of activated STAT, 4##AK222726|PIAS4|51588|protein inhibitor of activated STAT, 4##AF077952|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ892419|PIAS4|51588|protein inhibitor of activated STAT, 4##DQ895633|PIAS4|51588|protein inhibitor of activated STAT, 4##BC010047|PIAS4|51588|protein inhibitor of activated STAT, 4##AK093125|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ893601|MAP2K2|5605|mitogen-activated protein kinase kinase 2##DQ895060|MAP2K2|5605|mitogen-activated protein kinase kinase 2##L11285|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BC018645|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BX538081|MAP2K2|5605|mitogen-activated protein kinase kinase 2##BC000471|MAP2K2|5605|mitogen-activated protein kinase kinase 2##NM_030662|MAP2K2|5605|mitogen-activated protein kinase kinase 2	2.005953	0.0	denovo_WM_7:1:0.692	denovo_WM_7:95:0.630
chr4	116662179	116662266	reg1016045.p1	3.822	+	BC113075 BC012326 AK289670 AB036429 NM_022569	-627241	-	NM_003360 U30930	-1118700	+	TSC_hg19_v1_chr4_+_115519557 AK127970 NM_001128174	-1142639	+	AK074617 BC030831 NM_152402	1344511	-	TSC_hg19_v1_chr4_+_118954764 AY358852	2292549	+	AF074924 NM_004784 BC034037 AK295439 BC109309 BC109310	2293353	+	BC113075|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##BC012326|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AK289670|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##AB036429|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_022569|NDST4|64579|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4##NM_003360|UGT8|7368|UDP glycosyltransferase 8##U30930|UGT8|7368|UDP glycosyltransferase 8##AK127970|UGT8|7368|UDP glycosyltransferase 8##NM_001128174|UGT8|7368|UDP glycosyltransferase 8##AK074617|TRAM1L1|133022|translocation associated membrane protein 1-like 1##BC030831|TRAM1L1|133022|translocation associated membrane protein 1-like 1##NM_152402|TRAM1L1|133022|translocation associated membrane protein 1-like 1##AY358852|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AF074924|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##NM_004784|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC034037|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##AK295439|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109309|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3##BC109310|NDST3|9348|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	0.0	0.0	
chr8	65608037	65608103	reg1011831.p1	3.822	+	TSC_hg19_v1_chr8_+_65493611 AK091333	-114406	+	NM_152414 AK293979	-115212	+	TSC_hg19_v1_chr8_+_64081201 AL831816 AK056219 BC037492 AL832335	-1526870	+	TSC_hg19_v1_chr8_-_65711295 BC029155 AF029403 AF127090 BC136574 NM_004820	103209	-	TSC_hg19_v1_chr8_-_66546394 AK001373	938325	-	TSC_hg19_v1_chr8_-_66546404 AK304463	938336	-	AK091333|BHLHE22|27319|basic helix-loop-helix family, member e22##NM_152414|BHLHE22|27319|basic helix-loop-helix family, member e22##AK293979|BHLHE22|27319|basic helix-loop-helix family, member e22##AL831816|YTHDF3|253943|YTH domain family, member 3##AK056219|YTHDF3|253943|YTH domain family, member 3##BC037492|YTHDF3|253943|YTH domain family, member 3##AL832335|YTHDF3|253943|YTH domain family, member 3##BC029155|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF029403|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AF127090|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##BC136574|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##NM_004820|CYP7B1|9420|cytochrome P450, family 7, subfamily B, polypeptide 1##AK001373|ARMC1|55156|armadillo repeat containing 1##AK304463|ARMC1|55156|armadillo repeat containing 1	0.866329	0.0	
chr8	90818609	90818701	reg1019411.p1	3.822	+	AY524045 TSC_hg19_v1_chr8_+_90770252 AB587542 CU678766 AF078530 AY562996	-48371	+	NM_003821 TSC_hg19_v1_chr8_+_90769995 AY358814 AK301448 AF027706 AF064824 AK075213 AY358813 BC004553	-48625	+	AK314274 NM_005941 TSC_hg19_v1_chr8_-_89339773 AL832595	-1478909	-	AF061326 NM_004337	95440	+	BC031054 NM_001126111 TSC_hg19_v1_chr8_+_90914816	96139	+	TSC_hg19_v1_chr8_-_90996804 AB528582 BC143065 BC143066 BC108650 BC016762 BC005293 AF058696 AF051334 AK223256 BC146797 BC136802 BC136803 BC144413	178177	-	AY524045|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF078530|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY562996|RIPK2|8767|receptor-interacting serine-threonine kinase 2##NM_003821|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358814|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK301448|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF027706|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AF064824|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK075213|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AY358813|RIPK2|8767|receptor-interacting serine-threonine kinase 2##BC004553|RIPK2|8767|receptor-interacting serine-threonine kinase 2##AK314274|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##NM_005941|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AL832595|MMP16|4325|matrix metallopeptidase 16 (membrane-inserted)##AF061326|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_004337|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC031054|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##NM_001126111|OSGIN2|734|oxidative stress induced growth inhibitor family member 2##BC143065|NBN|4683|nibrin##BC143066|NBN|4683|nibrin##BC108650|NBN|4683|nibrin##BC016762|NBN|4683|nibrin##BC005293|NBN|4683|nibrin##AF058696|NBN|4683|nibrin##AF051334|NBN|4683|nibrin##AK223256|NBN|4683|nibrin##BC146797|NBN|4683|nibrin##BC136802|NBN|4683|nibrin##BC136803|NBN|4683|nibrin##BC144413|NBN|4683|nibrin	0.998964	0.0	
chr11	65801003	65801108	reg1012952.p2	3.821	+	AF407333 AB527999 CU689580 BC036522 BC032950 NM_053054	-7137	-	NM_001323 BC031334 U62800 U81233 CR456872	-21567	+	TSC_hg19_v1_chr11_+_65769973 BC005942 AK311961 BC008705	-30931	+	AB053232 NM_033036	15595	-	TSC_hg19_v1_chr11_+_65819834 NM_006842 AK290850 BC010372 BC053577 BX537771 AB463285 BC000401 U41371	18785	+	TSC_hg19_v1_chr11_+_65837841 AK096644 NM_018026 AK098336 AY320283 BC010096 BC052577	36855	+	AF407333|CATSPER1|117144|cation channel, sperm associated 1##BC036522|CATSPER1|117144|cation channel, sperm associated 1##BC032950|CATSPER1|117144|cation channel, sperm associated 1##NM_053054|CATSPER1|117144|cation channel, sperm associated 1##NM_001323|CST6|1474|cystatin E/M##BC031334|CST6|1474|cystatin E/M##U62800|CST6|1474|cystatin E/M##U81233|CST6|1474|cystatin E/M##CR456872|CST6|1474|cystatin E/M##BC005942|BANF1|8815|barrier to autointegration factor 1##AK311961|BANF1|8815|barrier to autointegration factor 1##BC008705|BANF1|8815|barrier to autointegration factor 1##AB053232|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##NM_033036|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##NM_006842|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AK290850|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC053577|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BX537771|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC000401|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##U41371|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AK096644|PACS1|55690|phosphofurin acidic cluster sorting protein 1##NM_018026|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AK098336|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AY320283|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC010096|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC052577|PACS1|55690|phosphofurin acidic cluster sorting protein 1	1.036495	0.0	
chr11	86666938	86667109	reg1014813.p2	3.821	+	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	-635	-	TSC_hg19_v1_chr11_-_86666094 AY462097	-916	-	NM_007173 TSC_hg19_v1_chr11_+_86511583 AK316508 AK075362 AK315562 AK304301 AK304054 BC063022 AL136914 BC001278 AF015287 AF193611 AY359033	-155471	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	81955	+	AK024853 TSC_hg19_v1_chr11_+_87032449	365419	+	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	1241569	-	BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##AY462097|FZD4|8322|frizzled family receptor 4##NM_007173|PRSS23|11098|protease, serine, 23##AK075362|PRSS23|11098|protease, serine, 23##AK315562|PRSS23|11098|protease, serine, 23##AK304301|PRSS23|11098|protease, serine, 23##AK304054|PRSS23|11098|protease, serine, 23##AL136914|PRSS23|11098|protease, serine, 23##BC001278|PRSS23|11098|protease, serine, 23##AF015287|PRSS23|11098|protease, serine, 23##AF193611|PRSS23|11098|protease, serine, 23##AY359033|PRSS23|11098|protease, serine, 23##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##AK024853|TMEM135|65084|transmembrane protein 135##BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family	0.0	0.0	
chr15	41155134	41155288	reg1002970.p5	3.821	+	TSC_hg19_v1_chr15_+_41136676 NM_001032367 AK303899 BC004140 BT007425 CU676280 DQ890747 DQ892293 DQ895493	-18510	+	TSC_hg19_v1_chr15_+_41136245 AK314825 AK300195 NM_003710 NM_181642 BC018702 AY358969 AB000095 AY296715	-18861	+	AK000258 BC096716 BC098124 BC098150 BC098341 NM_001130143 NM_017726	-34306	-	AY059636 BC112945 BC019353 BC105020 BC105022 AB079131 NM_133639 TSC_hg19_v1_chr15_-_41166557	11236	-	TSC_hg19_v1_chr15_+_41186647 AL713725 NM_020857 AB040908 AF308802 BC001513	31489	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	66487	+	NM_001032367|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK303899|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC004140|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BT007425|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ890747|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ892293|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##DQ895493|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK314825|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK300195|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_003710|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##NM_181642|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##BC018702|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY358969|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AB000095|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AY296715|SPINT1|6692|serine peptidase inhibitor, Kunitz type 1##AK000258|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC096716|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098124|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098150|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##BC098341|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_001130143|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##NM_017726|PPP1R14D|54866|protein phosphatase 1, regulatory (inhibitor) subunit 14D##AY059636|RHOV|171177|ras homolog gene family, member V##BC112945|RHOV|171177|ras homolog gene family, member V##BC019353|RHOV|171177|ras homolog gene family, member V##BC105020|RHOV|171177|ras homolog gene family, member V##BC105022|RHOV|171177|ras homolog gene family, member V##AB079131|RHOV|171177|ras homolog gene family, member V##NM_133639|RHOV|171177|ras homolog gene family, member V##AL713725|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_020857|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AB040908|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##AF308802|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##BC001513|VPS18|57617|vacuolar protein sorting 18 homolog (S. cerevisiae)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)	0.100217	0.0	
chr18	28083280	28083363	reg1017246.p1	3.821	+	TSC_hg19_v1_chr18_-_25757363 NM_001792	-2325924	-	TSC_hg19_v1_chr18_-_25757095 AB384981 EU832318 EU832403 X54315 BC036470	-2326284	-	AF239821 BC025764 TSC_hg19_v1_chr18_-_24765254 AY358488 NM_031422	-3318088	-	TSC_hg19_v1_chr18_-_28622624 X83929 D17427 AK291748 NM_001941 NM_024423	539381	-	CR749226 TSC_hg19_v1_chr18_-_28681542	598167	-	TSC_hg19_v1_chr18_-_28682275 EF017811 EF017812 X56807 AK297029 AK290313 BX648425 BC063291 NM_004949 NM_024422	598870	-	NM_001792|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832318|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832403|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X54315|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##BC036470|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##AF239821|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##BC025764|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AY358488|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_031422|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##X83929|DSC3|1825|desmocollin 3##D17427|DSC3|1825|desmocollin 3##AK291748|DSC3|1825|desmocollin 3##NM_001941|DSC3|1825|desmocollin 3##NM_024423|DSC3|1825|desmocollin 3##CR749226|DSC2|1824|desmocollin 2##EF017811|DSC2|1824|desmocollin 2##EF017812|DSC2|1824|desmocollin 2##X56807|DSC2|1824|desmocollin 2##AK297029|DSC2|1824|desmocollin 2##AK290313|DSC2|1824|desmocollin 2##BX648425|DSC2|1824|desmocollin 2##BC063291|DSC2|1824|desmocollin 2##NM_004949|DSC2|1824|desmocollin 2##NM_024422|DSC2|1824|desmocollin 2	0.994824	0.0	denovo_WM_7:39:0.736
chr2	107199084	107199219	reg1009323.p2	3.821	+	NM_001144013	-114351	-	TSC_hg19_v1_chr2_-_106810781 NM_025076	-388346	-	AK075120 AK075170 TSC_hg19_v1_chr2_-_106810758 AK122696	-388393	-	FJ433885 TSC_hg19_v1_chr2_-_107502508	303334	-	AB058780 NM_001142351 TSC_hg19_v1_chr2_-_107502624	303468	-	TSC_hg19_v1_chr2_-_107503063 FJ433884	303911	-	NM_001144013|RGPD3|653489|RANBP2-like and GRIP domain containing 3##NM_025076|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075120|UXS1|80146|UDP-glucuronate decarboxylase 1##AK075170|UXS1|80146|UDP-glucuronate decarboxylase 1##AK122696|UXS1|80146|UDP-glucuronate decarboxylase 1##AB058780|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2##NM_001142351|ST6GAL2|84620|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2	0.0	0.852766	CTCF.p2:50:0.727
chr22	36784499	36784573	reg1016179.p2	3.821	+	TSC_hg19_v1_chr22_-_36784062 NM_002473	-478	-	TSC_hg19_v1_chr22_-_36784013 AK304840 AK291609 AB191263	-528	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	-557	-	TSC_hg19_v1_chr22_-_36877665 BC013726 BC050610 AF480262 NM_012473 CR456601	93143	-	TSC_hg19_v1_chr22_-_36903081 BC027716 BC015726	118522	-	AK025714 AK225347 TSC_hg19_v1_chr22_-_36903088 AK315555 NM_024955 BC040351 NM_001102371	118581	-	NM_002473|MYH9|4627|myosin, heavy chain 9, non-muscle##AK304840|MYH9|4627|myosin, heavy chain 9, non-muscle##AK291609|MYH9|4627|myosin, heavy chain 9, non-muscle##AB191263|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle##BC013726|TXN2|25828|thioredoxin 2##BC050610|TXN2|25828|thioredoxin 2##AF480262|TXN2|25828|thioredoxin 2##NM_012473|TXN2|25828|thioredoxin 2##CR456601|TXN2|25828|thioredoxin 2##BC027716|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC015726|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK025714|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK225347|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##AK315555|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_024955|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##BC040351|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2##NM_001102371|FOXRED2|80020|FAD-dependent oxidoreductase domain containing 2	0.0	0.0	
chr3	4793215	4793334	reg1007759.p1	3.821	+	TSC_hg19_v1_chr3_+_4535164 BC144563	-258078	+	TSC_hg19_v1_chr3_+_4535139 D26070 L38019	-258146	+	TSC_hg19_v1_chr3_+_4535031 NM_001099952 NM_001168272 NM_002222 AK311008	-258243	+	NM_003670 TSC_hg19_v1_chr3_+_5021121 AK312509	227842	+	TSC_hg19_v1_chr3_+_5021147 BC068292 AB004066 BC082238	227907	+	AK293205 TSC_hg19_v1_chr3_+_5021310 EU446668 AB463428 CU687360 CR456921	228080	+	BC144563|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##D26070|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##L38019|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001099952|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_001168272|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_002222|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##AK311008|ITPR1|3708|inositol 1,4,5-trisphosphate receptor, type 1##NM_003670|BHLHE40|8553|basic helix-loop-helix family, member e40##AK312509|BHLHE40|8553|basic helix-loop-helix family, member e40##BC068292|BHLHE40|8553|basic helix-loop-helix family, member e40##AB004066|BHLHE40|8553|basic helix-loop-helix family, member e40##BC082238|BHLHE40|8553|basic helix-loop-helix family, member e40##AK293205|BHLHE40|8553|basic helix-loop-helix family, member e40##EU446668|BHLHE40|8553|basic helix-loop-helix family, member e40##CR456921|BHLHE40|8553|basic helix-loop-helix family, member e40	0.0	0.0	
chr6	14958401	14958581	reg1009306.p2	3.821	+	AK223315 AK290426 TSC_hg19_v1_chr6_+_14118002 AK307059 AK309541 DQ892356 DQ895563 Z11697 CU689036 BT019498 CR457019	-840469	+	TSC_hg19_v1_chr6_+_14117869 NM_001040280 NM_004233 BC030830 BC004351	-840586	+	NM_001251901	-841005	+	TSC_hg19_v1_chr6_+_15245702 AK302624	287226	+	TSC_hg19_v1_chr6_+_15246300 AK292861 BC046246 NM_004973 U57592	287921	+	BC033996 TSC_hg19_v1_chr6_-_15248900	290410	-	AK223315|CD83|9308|CD83 molecule##AK290426|CD83|9308|CD83 molecule##AK307059|CD83|9308|CD83 molecule##AK309541|CD83|9308|CD83 molecule##DQ892356|CD83|9308|CD83 molecule##DQ895563|CD83|9308|CD83 molecule##Z11697|CD83|9308|CD83 molecule##BT019498|CD83|9308|CD83 molecule##CR457019|CD83|9308|CD83 molecule##NM_001040280|CD83|9308|CD83 molecule##NM_004233|CD83|9308|CD83 molecule##BC030830|CD83|9308|CD83 molecule##BC004351|CD83|9308|CD83 molecule##NM_001251901|CD83|9308|CD83 molecule##AK302624|JARID2|3720|jumonji, AT rich interactive domain 2##AK292861|JARID2|3720|jumonji, AT rich interactive domain 2##BC046246|JARID2|3720|jumonji, AT rich interactive domain 2##NM_004973|JARID2|3720|jumonji, AT rich interactive domain 2##U57592|JARID2|3720|jumonji, AT rich interactive domain 2	1.230977	0.0	
chr6	89471368	89471503	reg1007003.p1	3.821	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-595669	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-616399	-	BC029488 NM_030960 AF203447	-713905	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	201756	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	201873	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	201912	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.0	0.0	
chr9	107537667	107537847	reg1006612.p2	3.821	+	AK002137 BC017914 BX647652 NM_018376 AK310397 BC005202	-11305	+	TSC_hg19_v1_chr9_+_107509977 BC005935 NM_015469 AK301410 AF161417 AK024015 AL117557 BC045830 CU675195	-27747	+	BC140916 AB587601 NM_001004484	-81077	+	AB055982 AB445477 TSC_hg19_v1_chr9_-_107665989	128240	-	AB037924 TSC_hg19_v1_chr9_-_107666055	128294	-	BC146856 TSC_hg19_v1_chr9_-_107690419 AF285167 BC034824 BC141816 BC142693 AK022254	152627	-	AK002137|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC017914|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BX647652|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##NM_018376|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##AK310397|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC005202|NIPSNAP3B|55335|nipsnap homolog 3B (C. elegans)##BC005935|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##NM_015469|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK301410|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AF161417|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AK024015|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##AL117557|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##BC045830|NIPSNAP3A|25934|nipsnap homolog 3A (C. elegans)##BC140916|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##NM_001004484|OR13D1|286365|olfactory receptor, family 13, subfamily D, member 1##AB055982|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AB445477|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AB037924|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##BC146856|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##AF285167|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1##BC034824|ABCA1|19|ATP-binding cassette, sub-family A (ABC1), member 1	0.0	0.0	
chr1	3573357	3573537	reg1003052.p3	3.820	+	TSC_hg19_v1_chr1_+_3569108 BC117251 BC117253 NM_001204184 NM_001204185 NM_001204186 NM_001204187 NM_001204188 NM_005427 Y11416	-4321	+	CU678066 AB034912 AK000437 AK225525 BC002611 BC086311 TSC_hg19_v1_chr1_-_3566668 AK302397 NM_017818	-6831	-	AK298343 TSC_hg19_v1_chr1_+_3541608 AK289919 BC019034	-31838	+	TSC_hg19_v1_chr1_+_3607235 AB055065 AB055066 AY040827 AY040828 AY040829 NM_001126240 NM_001126241 NM_001126242 NM_001204189 NM_001204190 NM_001204191 AK304177 AK304784	33811	+	AK310432 NM_001204192 AK302118	41168	+	TSC_hg19_v1_chr1_-_3663940 AB007964 BC035073 BC062467 BC089039	90470	-	BC117251|TP73|7161|tumor protein p73##BC117253|TP73|7161|tumor protein p73##NM_001204184|TP73|7161|tumor protein p73##NM_001204185|TP73|7161|tumor protein p73##NM_001204186|TP73|7161|tumor protein p73##NM_001204187|TP73|7161|tumor protein p73##NM_001204188|TP73|7161|tumor protein p73##NM_005427|TP73|7161|tumor protein p73##Y11416|TP73|7161|tumor protein p73##AB034912|WRAP73|49856|WD repeat containing, antisense to TP73##AK000437|WRAP73|49856|WD repeat containing, antisense to TP73##AK225525|WRAP73|49856|WD repeat containing, antisense to TP73##BC002611|WRAP73|49856|WD repeat containing, antisense to TP73##BC086311|WRAP73|49856|WD repeat containing, antisense to TP73##AK302397|WRAP73|49856|WD repeat containing, antisense to TP73##NM_017818|WRAP73|49856|WD repeat containing, antisense to TP73##AK298343|TPRG1L|127262|tumor protein p63 regulated 1-like##AK289919|TPRG1L|127262|tumor protein p63 regulated 1-like##BC019034|TPRG1L|127262|tumor protein p63 regulated 1-like##AB055065|TP73|7161|tumor protein p73##AB055066|TP73|7161|tumor protein p73##AY040827|TP73|7161|tumor protein p73##AY040828|TP73|7161|tumor protein p73##AY040829|TP73|7161|tumor protein p73##NM_001126240|TP73|7161|tumor protein p73##NM_001126241|TP73|7161|tumor protein p73##NM_001126242|TP73|7161|tumor protein p73##NM_001204189|TP73|7161|tumor protein p73##NM_001204190|TP73|7161|tumor protein p73##NM_001204191|TP73|7161|tumor protein p73##AK304177|TP73|7161|tumor protein p73##AK304784|TP73|7161|tumor protein p73##AK310432|TP73|7161|tumor protein p73##NM_001204192|TP73|7161|tumor protein p73##AK302118|TP73|7161|tumor protein p73##AB007964|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC035073|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)##BC089039|TP73-AS1|57212|TP73 antisense RNA 1 (non-protein coding)	0.0	0.0	
chr3	115986323	115986417	reg1014419.p1	3.820	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	-643951	+	NM_001130064 NM_002045	-644220	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-1120256	-	AK315286 TSC_hg19_v1_chr3_-_116164338	177961	-	TSC_hg19_v1_chr3_-_116164363 BC033803 NM_002338	178003	-	AB079879 AX781653 AK296503 TSC_hg19_v1_chr3_-_118753633 AK122611	2767163	-	AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315286|LSAMP|4045|limbic system-associated membrane protein##BC033803|LSAMP|4045|limbic system-associated membrane protein##NM_002338|LSAMP|4045|limbic system-associated membrane protein##AB079879|IGSF11|152404|immunoglobulin superfamily, member 11##AK296503|IGSF11|152404|immunoglobulin superfamily, member 11##AK122611|IGSF11|152404|immunoglobulin superfamily, member 11	0.992452	0.0	denovo_WM_7:96:0.496	denovo_WM_7:97:0.496
chr3	119041954	119042134	reg1008403.p1	3.820	+	TSC_hg19_v1_chr3_+_119013513 AK293726 BC112163 BC112165 AB384581 HQ258543	-28424	+	TSC_hg19_v1_chr3_+_119013229 AB033030 NM_020754	-28813	+	TSC_hg19_v1_chr3_-_118959726 AK001006 AK301688 AK314425 BX647468 CR749555 NM_003778 NM_212543	-82307	-	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	140425	-	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	145781	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	175429	+	AK293726|ARHGAP31|57514|Rho GTPase activating protein 31##BC112163|ARHGAP31|57514|Rho GTPase activating protein 31##BC112165|ARHGAP31|57514|Rho GTPase activating protein 31##HQ258543|ARHGAP31|57514|Rho GTPase activating protein 31##AB033030|ARHGAP31|57514|Rho GTPase activating protein 31##NM_020754|ARHGAP31|57514|Rho GTPase activating protein 31##AK001006|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK301688|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##AK314425|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BX647468|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##CR749555|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_003778|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##NM_212543|B4GALT4|8702|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1	0.0	0.0	
chr6	40276604	40276688	reg1009578.p2	3.820	+	TSC_hg19_v1_chr6_-_39902202 AK300300 AF034374 AK091306 AK056740 NM_001075098	-374432	-	AB527188 AJ224328 NM_005943	-381261	-	NM_015345 AL833083 BC128388	-515828	+	BC142616 AB033072 NM_020737 AK291474	278498	-	BC035284 NM_173561 TSC_hg19_v1_chr6_-_41006954	730303	-	NM_001010873 BC104440 BC104441 BC137560 BC137565 BC144710 NM_001159726	733700	+	AK300300|MOCS1|4337|molybdenum cofactor synthesis 1##AF034374|MOCS1|4337|molybdenum cofactor synthesis 1##AK091306|MOCS1|4337|molybdenum cofactor synthesis 1##AK056740|MOCS1|4337|molybdenum cofactor synthesis 1##NM_001075098|MOCS1|4337|molybdenum cofactor synthesis 1##AJ224328|MOCS1|4337|molybdenum cofactor synthesis 1##NM_005943|MOCS1|4337|molybdenum cofactor synthesis 1##NM_015345|DAAM2|23500|dishevelled associated activator of morphogenesis 2##AL833083|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC128388|DAAM2|23500|dishevelled associated activator of morphogenesis 2##BC142616|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AB033072|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##NM_020737|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##AK291474|LRFN2|57497|leucine rich repeat and fibronectin type III domain containing 2##BC035284|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_173561|UNC5CL|222643|unc-5 homolog C (C. elegans)-like##NM_001010873|TSPO2|222642|translocator protein 2##BC104440|TSPO2|222642|translocator protein 2##BC104441|TSPO2|222642|translocator protein 2##BC137560|TSPO2|222642|translocator protein 2##BC137565|TSPO2|222642|translocator protein 2##BC144710|TSPO2|222642|translocator protein 2##NM_001159726|TSPO2|222642|translocator protein 2	0.0	0.418599	CTCF.p2:-26:0.419
chr7	130942920	130943039	reg1013437.p2	3.820	+	AK294384 NM_001145354	-148125	+	TSC_hg19_v1_chr7_-_130792857 BC047367	-150120	-	AF490374 NM_138693 TSC_hg19_v1_chr7_-_130418967	-524052	-	NM_013255 TSC_hg19_v1_chr7_+_131012611	69627	+	TSC_hg19_v1_chr7_+_131012652 BC067825 AF047489 AK310452 AK002024	69660	+	BC042466 TSC_hg19_v1_chr7_-_131241369 U97519 AK223573 AK055816 NM_001018111 NM_005397	298384	-	AK294384|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##NM_001145354|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC047367|FLJ43663|378805|uncharacterized LOC378805##AF490374|KLF14|136259|Kruppel-like factor 14##NM_138693|KLF14|136259|Kruppel-like factor 14##NM_013255|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC067825|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AF047489|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK310452|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##AK002024|MKLN1|4289|muskelin 1, intracellular mediator containing kelch motifs##BC042466|PODXL|5420|podocalyxin-like##U97519|PODXL|5420|podocalyxin-like##AK223573|PODXL|5420|podocalyxin-like##AK055816|PODXL|5420|podocalyxin-like##NM_001018111|PODXL|5420|podocalyxin-like##NM_005397|PODXL|5420|podocalyxin-like	0.997208	0.0	denovo_WM_7:-84:0.972
chr10	99894402	99894548	reg1016087.p1	3.819	+	TSC_hg19_v1_chr10_+_99894427 AF525304 BC047908 BC098175 BC098268 BC098359 BC099848	-40	+	NM_014472 AK292546 TSC_hg19_v1_chr10_+_99894414	-78	+	AK057190 NM_001206528 NM_018058	-103891	-	TSC_hg19_v1_chr10_-_100027952 AK172781 BC013153 BC035470 NM_032211	133517	-	CU675263 DQ893418 DQ896787 AK075265 TSC_hg19_v1_chr10_-_100174919 AK225637 AK074429 BC006131 AK295699 NM_032709	280459	-	BC002514 TSC_hg19_v1_chr10_-_100206650	312171	-	AF525304|C10orf28|27291|chromosome 10 open reading frame 28##BC047908|C10orf28|27291|chromosome 10 open reading frame 28##BC098175|C10orf28|27291|chromosome 10 open reading frame 28##BC098268|C10orf28|27291|chromosome 10 open reading frame 28##BC098359|C10orf28|27291|chromosome 10 open reading frame 28##BC099848|C10orf28|27291|chromosome 10 open reading frame 28##NM_014472|C10orf28|27291|chromosome 10 open reading frame 28##AK292546|C10orf28|27291|chromosome 10 open reading frame 28##AK057190|CRTAC1|55118|cartilage acidic protein 1##NM_001206528|CRTAC1|55118|cartilage acidic protein 1##NM_018058|CRTAC1|55118|cartilage acidic protein 1##AK172781|LOXL4|84171|lysyl oxidase-like 4##BC013153|LOXL4|84171|lysyl oxidase-like 4##BC035470|LOXL4|84171|lysyl oxidase-like 4##NM_032211|LOXL4|84171|lysyl oxidase-like 4##DQ893418|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##DQ896787|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##AK075265|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##AK225637|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##AK074429|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##BC006131|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##AK295699|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##NM_032709|PYROXD2|84795|pyridine nucleotide-disulphide oxidoreductase domain 2##BC002514|HPS1|3257|Hermansky-Pudlak syndrome 1	0.0	0.0	
chr1	15558331	15558454	reg1017534.p1	3.819	+	TSC_hg19_v1_chr1_+_15480249 AK001061 NM_001136218 NM_018022 BC000593 BC005177 AK098467	-78144	+	AK129922 TSC_hg19_v1_chr1_+_15479310	-79088	+	AK292184 NM_001136216 NM_001136217 TSC_hg19_v1_chr1_+_15479047	-79361	+	AK057963 NM_052929	15375	+	TSC_hg19_v1_chr1_+_15736390 NM_024329	178008	+	BC068473 TSC_hg19_v1_chr1_+_15736425 BC007233 BC014923 BC023611	178043	+	AK001061|TMEM51|55092|transmembrane protein 51##NM_001136218|TMEM51|55092|transmembrane protein 51##NM_018022|TMEM51|55092|transmembrane protein 51##BC000593|TMEM51|55092|transmembrane protein 51##BC005177|TMEM51|55092|transmembrane protein 51##AK098467|TMEM51|55092|transmembrane protein 51##AK129922|TMEM51|55092|transmembrane protein 51##AK292184|TMEM51|55092|transmembrane protein 51##NM_001136216|TMEM51|55092|transmembrane protein 51##NM_001136217|TMEM51|55092|transmembrane protein 51##AK057963|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_052929|FHAD1|114827|forkhead-associated (FHA) phosphopeptide binding domain 1##NM_024329|EFHD2|79180|EF-hand domain family, member D2##BC068473|EFHD2|79180|EF-hand domain family, member D2##BC007233|EFHD2|79180|EF-hand domain family, member D2##BC014923|EFHD2|79180|EF-hand domain family, member D2##BC023611|EFHD2|79180|EF-hand domain family, member D2	0.0	0.0	
chr1	4363168	4363273	reg1010449.p1	3.819	+	TSC_hg19_v1_chr1_-_3816823 BC067302 AK125092 AK289493 NM_207356	-546375	-	TSC_hg19_v1_chr1_-_3816816 CU688284 BC035643 BC047611	-546457	-	BC048797 NM_004402	-589376	+	TSC_hg19_v1_chr1_+_4714668 AF175409	351509	+	AY282806 NM_001042478 NM_018836	351884	+	NM_001199861	1689137	+	BC067302|C1orf174|339448|chromosome 1 open reading frame 174##AK125092|C1orf174|339448|chromosome 1 open reading frame 174##AK289493|C1orf174|339448|chromosome 1 open reading frame 174##NM_207356|C1orf174|339448|chromosome 1 open reading frame 174##BC035643|C1orf174|339448|chromosome 1 open reading frame 174##BC047611|C1orf174|339448|chromosome 1 open reading frame 174##BC048797|DFFB|1677|DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)##NM_004402|DFFB|1677|DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase)##AF175409|AJAP1|55966|adherens junctions associated protein 1##AY282806|AJAP1|55966|adherens junctions associated protein 1##NM_001042478|AJAP1|55966|adherens junctions associated protein 1##NM_018836|AJAP1|55966|adherens junctions associated protein 1##NM_001199861|KCNAB2|8514|potassium voltage-gated channel, shaker-related subfamily, beta member 2	0.0	0.0	
chr17	36899467	36899546	reg1012676.p2	3.819	+	TSC_hg19_v1_chr17_+_36886574 NM_001136498 AK097047 BC062294	-12874	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	-37616	+	TSC_hg19_v1_chr17_+_36861421 BC064612	-37907	+	TSC_hg19_v1_chr17_-_36904564 BC024255 NM_007144	5061	-	TSC_hg19_v1_chr17_-_36906030 BX647429	6543	-	TSC_hg19_v1_chr17_+_36909011 NM_002795 BC013008 BC002570 D26598	9524	+	NM_001136498|CISD3|284106|CDGSH iron sulfur domain 3##AK097047|CISD3|284106|CDGSH iron sulfur domain 3##BC062294|CISD3|284106|CDGSH iron sulfur domain 3##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##BC024255|PCGF2|7703|polycomb group ring finger 2##NM_007144|PCGF2|7703|polycomb group ring finger 2##BX647429|PCGF2|7703|polycomb group ring finger 2##NM_002795|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##BC013008|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3##D26598|PSMB3|5691|proteasome (prosome, macropain) subunit, beta type, 3	0.994628	0.0	denovo_WM_7:10:0.239	denovo_WM_7:11:0.239	denovo_WM_7:12:0.239	denovo_WM_7:13:0.239
chr17	39941452	39941574	reg1017088.p1	3.819	+	DQ891420 DQ894594 AY243535 TSC_hg19_v1_chr17_-_39928132	-13392	-	TSC_hg19_v1_chr17_-_39928100 AB384746 CU680086	-13411	-	AB209105 AB463758 AK022007 AF040723 NM_001079870 NM_001079871 NM_177977	-50624	-	TSC_hg19_v1_chr17_-_39942964 AK226051 M23410 Z68228 BC000441 AK293479 NM_002230 NM_021991	1470	-	AY295765 TSC_hg19_v1_chr17_-_39967969	26430	-	TSC_hg19_v1_chr17_-_39968202 DQ893598 EU831442 EU831534 CU674526 U47621 BC011701 AK222945 BC007942 AK301301 BC001047 AJ250583	26687	-	DQ891420|JUP|3728|junction plakoglobin##DQ894594|JUP|3728|junction plakoglobin##AY243535|JUP|3728|junction plakoglobin##AB209105|HAP1|9001|huntingtin-associated protein 1##AK022007|HAP1|9001|huntingtin-associated protein 1##AF040723|HAP1|9001|huntingtin-associated protein 1##NM_001079870|HAP1|9001|huntingtin-associated protein 1##NM_001079871|HAP1|9001|huntingtin-associated protein 1##NM_177977|HAP1|9001|huntingtin-associated protein 1##AK226051|JUP|3728|junction plakoglobin##M23410|JUP|3728|junction plakoglobin##Z68228|JUP|3728|junction plakoglobin##BC000441|JUP|3728|junction plakoglobin##NM_002230|JUP|3728|junction plakoglobin##NM_021991|JUP|3728|junction plakoglobin##DQ893598|LEPREL4|10609|leprecan-like 4##EU831442|LEPREL4|10609|leprecan-like 4##EU831534|LEPREL4|10609|leprecan-like 4##U47621|LEPREL4|10609|leprecan-like 4##BC011701|LEPREL4|10609|leprecan-like 4##AK222945|LEPREL4|10609|leprecan-like 4##BC007942|LEPREL4|10609|leprecan-like 4##AK301301|LEPREL4|10609|leprecan-like 4##BC001047|LEPREL4|10609|leprecan-like 4##AJ250583|LEPREL4|10609|leprecan-like 4	0.976606	0.0	denovo_WM_7:7:0.953
chr19	8280204	8280328	reg1003221.p1	3.819	+	TSC_hg19_v1_chr19_+_8274253 NM_024552 AK222621 AK225394 AK022151 BC063621	-6018	+	AB384635 AB053450 BC153882 NM_032447	-67891	-	BC130561 BC144463 HQ258070 AB046579 BC125136 U86358 TSC_hg19_v1_chr19_+_8118008	-162319	+	TSC_hg19_v1_chr19_-_8373195 CR457174 EU831651 BC036814 BC007083 AY358420 AL365455 BC000668 AK222623 AK315656 AL136652 AK058014 AF161254 NM_001165895 NM_016579	92943	-	TSC_hg19_v1_chr19_-_8386260 AF050637 CR456915 CR542266 BC107892 AF054178	105991	-	TSC_hg19_v1_chr19_-_8386300 BC003102 NM_005001	106020	-	NM_024552|CERS4|79603|ceramide synthase 4##AK222621|CERS4|79603|ceramide synthase 4##AK225394|CERS4|79603|ceramide synthase 4##AK022151|CERS4|79603|ceramide synthase 4##BC063621|CERS4|79603|ceramide synthase 4##AB053450|FBN3|84467|fibrillin 3##BC153882|FBN3|84467|fibrillin 3##NM_032447|FBN3|84467|fibrillin 3##BC130561|CCL25|6370|chemokine (C-C motif) ligand 25##BC144463|CCL25|6370|chemokine (C-C motif) ligand 25##HQ258070|CCL25|6370|chemokine (C-C motif) ligand 25##AB046579|CCL25|6370|chemokine (C-C motif) ligand 25##BC125136|CCL25|6370|chemokine (C-C motif) ligand 25##U86358|CCL25|6370|chemokine (C-C motif) ligand 25##CR457174|CD320|51293|CD320 molecule##EU831651|CD320|51293|CD320 molecule##BC036814|CD320|51293|CD320 molecule##BC007083|CD320|51293|CD320 molecule##AY358420|CD320|51293|CD320 molecule##AL365455|CD320|51293|CD320 molecule##BC000668|CD320|51293|CD320 molecule##AK222623|CD320|51293|CD320 molecule##AK315656|CD320|51293|CD320 molecule##AL136652|CD320|51293|CD320 molecule##AK058014|CD320|51293|CD320 molecule##AF161254|CD320|51293|CD320 molecule##NM_001165895|CD320|51293|CD320 molecule##NM_016579|CD320|51293|CD320 molecule##AF050637|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR456915|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##CR542266|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC107892|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##AF054178|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##BC003102|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa##NM_005001|NDUFA7|4701|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa	0.673767	0.0	
chr2	65144090	65144192	reg1008176.p1	3.819	+	TSC_hg19_v1_chr2_-_65090764 AK097952	-53400	-	TSC_hg19_v1_chr2_-_64881051 D50917 NM_014755 AK311117	-263094	-	BC074788 BC074789 BC101639 BC101641 TSC_hg19_v1_chr2_-_64880905	-263292	-	TSC_hg19_v1_chr2_-_65159574 BC037562	15436	-	TSC_hg19_v1_chr2_+_65215619 NM_001193493 AK295687	71459	+	TSC_hg19_v1_chr2_+_65216485 AK298472 AK315986 NM_003038	72350	+	D50917|SERTAD2|9792|SERTA domain containing 2##NM_014755|SERTAD2|9792|SERTA domain containing 2##AK311117|SERTAD2|9792|SERTA domain containing 2##BC074788|SERTAD2|9792|SERTA domain containing 2##BC074789|SERTAD2|9792|SERTA domain containing 2##BC101639|SERTAD2|9792|SERTA domain containing 2##BC101641|SERTAD2|9792|SERTA domain containing 2##BC037562|LOC400958|400958|uncharacterized LOC400958##NM_001193493|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK295687|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK298472|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##AK315986|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4##NM_003038|SLC1A4|6509|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	1.203151	0.081177	denovo_WM_7:-9:0.904
chr6	42475140	42475296	reg1016390.p2	3.819	+	AF297872 NM_033502 AM404182 AM404183 AM404259 TSC_hg19_v1_chr6_-_42419826 AK308473	-55395	-	TSC_hg19_v1_chr6_-_42185603 NM_018141	-289601	-	TSC_hg19_v1_chr6_-_42185600 AK001429	-289618	-	TSC_hg19_v1_chr6_+_42531736 NM_001184801 NM_015255	56532	+	TSC_hg19_v1_chr6_+_42531768 BC024217 BC064512	56559	+	TSC_hg19_v1_chr6_+_42531956 AY061884 CU687884	56786	+	AF297872|TRERF1|55809|transcriptional regulating factor 1##NM_033502|TRERF1|55809|transcriptional regulating factor 1##AM404182|TRERF1|55809|transcriptional regulating factor 1##AM404183|TRERF1|55809|transcriptional regulating factor 1##AM404259|TRERF1|55809|transcriptional regulating factor 1##AK308473|TRERF1|55809|transcriptional regulating factor 1##NM_018141|MRPS10|55173|mitochondrial ribosomal protein S10##AK001429|MRPS10|55173|mitochondrial ribosomal protein S10##NM_001184801|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##NM_015255|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC024217|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##BC064512|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2##AY061884|UBR2|23304|ubiquitin protein ligase E3 component n-recognin 2	0.98581	0.0	denovo_WM_7:103:0.814
chr8	77897605	77897730	reg1002599.p2	3.819	+	AK131399 TSC_hg19_v1_chr8_+_77765961	-131778	+	AB083343 TSC_hg19_v1_chr8_+_77593533	-304139	+	TSC_hg19_v1_chr8_+_77593510 AK131408 NM_024721	-304157	+	BC000661 BC093043 TSC_hg19_v1_chr8_-_77912318 BC005375 M85038 AK312997 M86852 NM_000318 NM_001079867	14742	-	NM_001172086 NM_001172087	15612	-	NM_006823 NM_181839 S76965	1530668	+	AK131399|ZFHX4|79776|zinc finger homeobox 4##AB083343|ZFHX4|79776|zinc finger homeobox 4##AK131408|ZFHX4|79776|zinc finger homeobox 4##NM_024721|ZFHX4|79776|zinc finger homeobox 4##BC000661|PEX2|5828|peroxisomal biogenesis factor 2##BC093043|PEX2|5828|peroxisomal biogenesis factor 2##BC005375|PEX2|5828|peroxisomal biogenesis factor 2##M85038|PEX2|5828|peroxisomal biogenesis factor 2##AK312997|PEX2|5828|peroxisomal biogenesis factor 2##M86852|PEX2|5828|peroxisomal biogenesis factor 2##NM_000318|PEX2|5828|peroxisomal biogenesis factor 2##NM_001079867|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172086|PEX2|5828|peroxisomal biogenesis factor 2##NM_001172087|PEX2|5828|peroxisomal biogenesis factor 2##NM_006823|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##NM_181839|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha##S76965|PKIA|5569|protein kinase (cAMP-dependent, catalytic) inhibitor alpha	0.0	0.0	
chr10	94000453	94000575	reg1016196.p1	3.818	+	TSC_hg19_v1_chr10_+_93683569 AF038362 NM_003972 BC112201 AJ001017	-316822	+	TSC_hg19_v1_chr10_+_93683526 AK308399	-316998	+	AK315427 BC025966 AK075410 NM_152429	-331294	-	AB023157 NM_001178137 TSC_hg19_v1_chr10_-_94003035	2505	-	TSC_hg19_v1_chr10_-_94050827 BC036444 AK302576 NM_014912	50322	-	TSC_hg19_v1_chr10_+_94050959 AK000452 AK309175 NM_017824 AK294799 BC015480 AB191202 AB529108	50540	+	AF038362|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##NM_003972|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##BC112201|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AJ001017|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK308399|BTAF1|9044|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)##AK315427|FGFBP3|143282|fibroblast growth factor binding protein 3##BC025966|FGFBP3|143282|fibroblast growth factor binding protein 3##AK075410|FGFBP3|143282|fibroblast growth factor binding protein 3##NM_152429|FGFBP3|143282|fibroblast growth factor binding protein 3##AB023157|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_001178137|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##BC036444|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK302576|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##NM_014912|CPEB3|22849|cytoplasmic polyadenylation element binding protein 3##AK000452|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK309175|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##NM_017824|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AK294799|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##BC015480|MARCH5|54708|membrane-associated ring finger (C3HC4) 5##AB191202|MARCH5|54708|membrane-associated ring finger (C3HC4) 5	0.0	0.0	
chr11	26617169	26617349	reg1008196.p2	3.818	+	AK128337 AJ417818 AJ507429 BC058007 AY358668 BC020912 NM_001135091 NM_001135092 NM_145650	-23519	-	NM_031418 AK302659	-263529	+	AK127695 NM_001009909 NM_001252008 NM_001252010 TSC_hg19_v1_chr11_+_24518540 AY164460 AL832641 AY358386 BC132829 BC144177 AK309077 BC151234 HQ258382	-2098610	+	BC049207 NM_178498	126300	-	NM_203371 TSC_hg19_v1_chr11_+_27015658	398383	+	TSC_hg19_v1_chr11_+_27015673 AK310616	398411	+	AK128337|MUC15|143662|mucin 15, cell surface associated##AJ417818|MUC15|143662|mucin 15, cell surface associated##AJ507429|MUC15|143662|mucin 15, cell surface associated##BC058007|MUC15|143662|mucin 15, cell surface associated##AY358668|MUC15|143662|mucin 15, cell surface associated##BC020912|MUC15|143662|mucin 15, cell surface associated##NM_001135091|MUC15|143662|mucin 15, cell surface associated##NM_001135092|MUC15|143662|mucin 15, cell surface associated##NM_145650|MUC15|143662|mucin 15, cell surface associated##NM_031418|ANO3|63982|anoctamin 3##AK302659|ANO3|63982|anoctamin 3##AK127695|LUZP2|338645|leucine zipper protein 2##NM_001009909|LUZP2|338645|leucine zipper protein 2##NM_001252008|LUZP2|338645|leucine zipper protein 2##NM_001252010|LUZP2|338645|leucine zipper protein 2##AY164460|LUZP2|338645|leucine zipper protein 2##AL832641|LUZP2|338645|leucine zipper protein 2##AY358386|LUZP2|338645|leucine zipper protein 2##BC132829|LUZP2|338645|leucine zipper protein 2##BC144177|LUZP2|338645|leucine zipper protein 2##AK309077|LUZP2|338645|leucine zipper protein 2##BC151234|LUZP2|338645|leucine zipper protein 2##HQ258382|LUZP2|338645|leucine zipper protein 2##BC049207|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12##NM_178498|SLC5A12|159963|solute carrier family 5 (sodium/glucose cotransporter), member 12##NM_203371|FIBIN|387758|fin bud initiation factor homolog (zebrafish)	0.0	0.0	
chr1	233734139	233734267	reg1003802.p3	3.818	+	AJ311797 AJ311798 NM_032435 BC136648 BC136649	-270620	+	NM_014801 TSC_hg19_v1_chr1_-_233431485 AK092353 AX747494	-302720	-	TSC_hg19_v1_chr1_+_233086381 AF416713	-647814	+	NM_002245 U33632 U90065 AK314016 BC018051 U76996 TSC_hg19_v1_chr1_+_233749898	15620	+	CU676150 DQ892383 DQ895595 TSC_hg19_v1_chr1_+_233749922	15716	+	TSC_hg19_v1_chr1_+_234040547 AK095031 NM_173508	306409	+	AJ311797|KIAA1804|84451|mixed lineage kinase 4##AJ311798|KIAA1804|84451|mixed lineage kinase 4##NM_032435|KIAA1804|84451|mixed lineage kinase 4##BC136648|KIAA1804|84451|mixed lineage kinase 4##BC136649|KIAA1804|84451|mixed lineage kinase 4##NM_014801|PCNXL2|80003|pecanex-like 2 (Drosophila)##AK092353|PCNXL2|80003|pecanex-like 2 (Drosophila)##AF416713|NTPCR|84284|nucleoside-triphosphatase, cancer-related##NM_002245|KCNK1|3775|potassium channel, subfamily K, member 1##U33632|KCNK1|3775|potassium channel, subfamily K, member 1##U90065|KCNK1|3775|potassium channel, subfamily K, member 1##AK314016|KCNK1|3775|potassium channel, subfamily K, member 1##BC018051|KCNK1|3775|potassium channel, subfamily K, member 1##U76996|KCNK1|3775|potassium channel, subfamily K, member 1##DQ892383|KCNK1|3775|potassium channel, subfamily K, member 1##DQ895595|KCNK1|3775|potassium channel, subfamily K, member 1##AK095031|SLC35F3|148641|solute carrier family 35, member F3##NM_173508|SLC35F3|148641|solute carrier family 35, member F3	1.75044	0.0	denovo_WM_7:-14:0.695	denovo_WM_7:57:0.688
chr14	72631311	72631433	reg1017384.p1	3.818	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-231506	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-232219	+	AK294895 NM_001204423	-232556	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	729436	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	761763	+	AK098542 AF311602 NM_178441	822285	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.0	0.0	
chr16	22135481	22135602	reg1015160.p1	3.818	+	AK098260 AK128606 AK307544 NM_173615	-31680	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-116053	+	BC039562 BC021724 BC028605 NM_173806	-123113	-	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	82132	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	173207	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	250254	-	AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##BC039562|PDZD9|255762|PDZ domain containing 9##BC021724|PDZD9|255762|PDZ domain containing 9##BC028605|PDZD9|255762|PDZ domain containing 9##NM_173806|PDZD9|255762|PDZ domain containing 9##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa	0.997093	0.0	
chr17	32569674	32569790	reg1018318.p1	3.818	+	EU446513 U50352 BC075042 BC075043 U53212 AK313043 NM_001094 U57352	-86045	-	AL834182 NM_183377	-949727	-	AF216311 NM_173847 BC100886 BC100887	-1250830	+	NM_002982 M24545 AK311308 AK311960 BC009716 S71513 X14768 M28226 S69738 DQ893725 EU176175 AB463485 BT007329	12599	+	NM_006273 X71087 BC092436 BC070240 BC112258 BC112260 AB587424 HQ258695	27541	+	NM_002986 BC017850 Z69291 Z75668 U46573 Z75669 DQ891969 DQ895158 AB463482 CR457421	43024	+	EU446513|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U50352|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##BC075042|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##BC075043|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U53212|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AK313043|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_001094|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##U57352|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AL834182|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##NM_183377|ACCN1|40|amiloride-sensitive cation channel 1, neuronal##AF216311|SPACA3|124912|sperm acrosome associated 3##NM_173847|SPACA3|124912|sperm acrosome associated 3##BC100886|SPACA3|124912|sperm acrosome associated 3##BC100887|SPACA3|124912|sperm acrosome associated 3##NM_002982|CCL2|6347|chemokine (C-C motif) ligand 2##M24545|CCL2|6347|chemokine (C-C motif) ligand 2##AK311960|CCL2|6347|chemokine (C-C motif) ligand 2##BC009716|CCL2|6347|chemokine (C-C motif) ligand 2##S71513|CCL2|6347|chemokine (C-C motif) ligand 2##X14768|CCL2|6347|chemokine (C-C motif) ligand 2##M28226|CCL2|6347|chemokine (C-C motif) ligand 2##S69738|CCL2|6347|chemokine (C-C motif) ligand 2##DQ893725|CCL2|6347|chemokine (C-C motif) ligand 2##EU176175|CCL2|6347|chemokine (C-C motif) ligand 2##BT007329|CCL2|6347|chemokine (C-C motif) ligand 2##NM_006273|CCL7|6354|chemokine (C-C motif) ligand 7##X71087|CCL7|6354|chemokine (C-C motif) ligand 7##BC092436|CCL7|6354|chemokine (C-C motif) ligand 7##BC070240|CCL7|6354|chemokine (C-C motif) ligand 7##BC112258|CCL7|6354|chemokine (C-C motif) ligand 7##BC112260|CCL7|6354|chemokine (C-C motif) ligand 7##HQ258695|CCL7|6354|chemokine (C-C motif) ligand 7##NM_002986|CCL11|6356|chemokine (C-C motif) ligand 11##BC017850|CCL11|6356|chemokine (C-C motif) ligand 11##Z69291|CCL11|6356|chemokine (C-C motif) ligand 11##Z75668|CCL11|6356|chemokine (C-C motif) ligand 11##U46573|CCL11|6356|chemokine (C-C motif) ligand 11##Z75669|CCL11|6356|chemokine (C-C motif) ligand 11##DQ891969|CCL11|6356|chemokine (C-C motif) ligand 11##DQ895158|CCL11|6356|chemokine (C-C motif) ligand 11##CR457421|CCL11|6356|chemokine (C-C motif) ligand 11	0.646406	0.0	denovo_WM_7:-11:0.590
chr20	34123664	34123745	reg1012918.p1	3.818	+	AK058089 AK310337 NM_001145350	-6241	-	TSC_hg19_v1_chr20_+_34042987 AK307861 AB621828 AF049105 NM_007186	-80630	+	AB593125 U13660 NM_000557	-97714	-	NM_015966 NM_198398 TSC_hg19_v1_chr20_+_34129827 AF308298 AF077030 AF151812 EF206690 BC014014	6098	+	AK074550 BC009765 TSC_hg19_v1_chr20_+_34129829 AK096484 AK300916	6126	+	TSC_hg19_v1_chr20_+_34129833 CU679479 CU680742 AF091085	6141	+	AK058089|C20orf173|140873|chromosome 20 open reading frame 173##AK310337|C20orf173|140873|chromosome 20 open reading frame 173##NM_001145350|C20orf173|140873|chromosome 20 open reading frame 173##AK307861|CEP250|11190|centrosomal protein 250kDa##AF049105|CEP250|11190|centrosomal protein 250kDa##NM_007186|CEP250|11190|centrosomal protein 250kDa##AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5##NM_015966|ERGIC3|51614|ERGIC and golgi 3##NM_198398|ERGIC3|51614|ERGIC and golgi 3##AF308298|ERGIC3|51614|ERGIC and golgi 3##AF077030|ERGIC3|51614|ERGIC and golgi 3##AF151812|ERGIC3|51614|ERGIC and golgi 3##EF206690|ERGIC3|51614|ERGIC and golgi 3##BC014014|ERGIC3|51614|ERGIC and golgi 3##AK074550|ERGIC3|51614|ERGIC and golgi 3##BC009765|ERGIC3|51614|ERGIC and golgi 3##AK096484|ERGIC3|51614|ERGIC and golgi 3##AK300916|ERGIC3|51614|ERGIC and golgi 3##AF091085|ERGIC3|51614|ERGIC and golgi 3	0.99561	0.0	denovo_WM_7:-33:0.982
chr2	24165211	24165324	reg1018585.p1	3.818	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	-1896	+	TSC_hg19_v1_chr2_+_24150144 BC037901	-15110	+	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	-15321	-	NM_001080473	67685	+	AK025598 TSC_hg19_v1_chr2_-_24270262 BC035698 NM_001142319 NM_025203	104991	-	NM_004116 NM_054033 BC050998 TSC_hg19_v1_chr2_+_24272612	107332	+	BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A##BC037901|UBXN2A|165324|UBX domain protein 2A##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001080473|MFSD2B|388931|major facilitator superfamily domain containing 2B##AK025598|C2orf44|80304|chromosome 2 open reading frame 44##BC035698|C2orf44|80304|chromosome 2 open reading frame 44##NM_001142319|C2orf44|80304|chromosome 2 open reading frame 44##NM_025203|C2orf44|80304|chromosome 2 open reading frame 44##NM_004116|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##NM_054033|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##BC050998|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa	0.998994	0.0	
chr4	38320373	38320540	reg1010391.p1	3.818	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-341439	+	AF095288 BC069114 BC069400 NM_006607	-358401	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-427667	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	345370	+	AF289565 TSC_hg19_v1_chr4_-_38666549	346033	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	464143	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.998582	0.0	denovo_WM_7:-41:0.494	denovo_WM_7:-42:0.494
chr5	157156779	157156959	reg1004901.p1	3.818	+	NM_001145132	-58309	+	BC035142 AK055284 TSC_hg19_v1_chr5_-_157098473 AK302162	-58404	-	AB022083 AB022441 AK308329 AK225861 BC033492 NM_007017 NM_178424	-77470	-	AY463216 NM_017872 TSC_hg19_v1_chr5_+_157158427 AK000553 AK223119 AK304590 BC023521 AL136669 AK021663 AB528251 AM392629 CR533503 BC001523 BC001852 CU674750	1559	+	BC126449 TSC_hg19_v1_chr5_+_157170749 AK095592 NM_173491 BC051353	13871	+	AK055297 TSC_hg19_v1_chr5_+_157184422	27511	+	NM_001145132|C5orf52|100190949|chromosome 5 open reading frame 52##AK302162|SOX30|11063|SRY (sex determining region Y)-box 30##AB022083|SOX30|11063|SRY (sex determining region Y)-box 30##AB022441|SOX30|11063|SRY (sex determining region Y)-box 30##AK308329|SOX30|11063|SRY (sex determining region Y)-box 30##BC033492|SOX30|11063|SRY (sex determining region Y)-box 30##NM_007017|SOX30|11063|SRY (sex determining region Y)-box 30##NM_178424|SOX30|11063|SRY (sex determining region Y)-box 30##AY463216|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##NM_017872|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK000553|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK223119|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK304590|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC023521|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AL136669|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##AK021663|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##CR533503|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC001523|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC001852|THG1L|54974|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)##BC126449|LSM11|134353|LSM11, U7 small nuclear RNA associated##AK095592|LSM11|134353|LSM11, U7 small nuclear RNA associated##NM_173491|LSM11|134353|LSM11, U7 small nuclear RNA associated##BC051353|LSM11|134353|LSM11, U7 small nuclear RNA associated	0.97741	0.0	denovo_WM_7:-82:0.579	denovo_WM_7:-83:0.398
chr6	71422776	71422862	reg1011329.p1	3.818	+	TSC_hg19_v1_chr6_+_71377620 AK315579 BC028074 BC008672 AK303387 BC036123 AK023221 AY055003 AY055004 AK222711 AK290448 CU688386	-45164	+	TSC_hg19_v1_chr6_+_71377511 NM_001044305 NM_021940 AF442495	-45296	+	TSC_hg19_v1_chr6_+_71276632 BC018085 NM_145267 BC104649 GQ129294 GQ129295	-146194	+	AB075843 NM_080742	243944	-	NM_024576 TSC_hg19_v1_chr6_+_71998479	575667	+	TSC_hg19_v1_chr6_+_71998513 BC018688	575691	+	AK315579|SMAP1|60682|small ArfGAP 1##BC028074|SMAP1|60682|small ArfGAP 1##BC008672|SMAP1|60682|small ArfGAP 1##AK303387|SMAP1|60682|small ArfGAP 1##BC036123|SMAP1|60682|small ArfGAP 1##AK023221|SMAP1|60682|small ArfGAP 1##AY055003|SMAP1|60682|small ArfGAP 1##AY055004|SMAP1|60682|small ArfGAP 1##AK222711|SMAP1|60682|small ArfGAP 1##AK290448|SMAP1|60682|small ArfGAP 1##NM_001044305|SMAP1|60682|small ArfGAP 1##NM_021940|SMAP1|60682|small ArfGAP 1##AF442495|SMAP1|60682|small ArfGAP 1##BC018085|C6orf57|135154|chromosome 6 open reading frame 57##NM_145267|C6orf57|135154|chromosome 6 open reading frame 57##BC104649|C6orf57|135154|chromosome 6 open reading frame 57##GQ129294|C6orf57|135154|chromosome 6 open reading frame 57##GQ129295|C6orf57|135154|chromosome 6 open reading frame 57##AB075843|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_080742|B3GAT2|135152|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)##NM_024576|OGFRL1|79627|opioid growth factor receptor-like 1##BC018688|OGFRL1|79627|opioid growth factor receptor-like 1	0.0	0.0	
chr7	93633653	93633732	reg1013973.p1	3.818	+	BT009853 DQ894078 BC000899 TSC_hg19_v1_chr7_-_93633668 CR749267 AF007551 AK313984 BC012595 NM_005868	-78	-	NM_004126 BC009709	-82636	+	BC029367 NM_021955	-97873	+	J03464 NM_000089 X02488	390180	+	TSC_hg19_v1_chr7_+_94024206 AK297786 AK223175 AK300194 Z74616 AK226074 BC042586 BC054498 Y00724 CU691094 AB384984	390579	+	TSC_hg19_v1_chr7_+_94139172 BC029543 NM_022900 BC063284 AF397424	505430	+	BT009853|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##DQ894078|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##BC000899|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##CR749267|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##AF007551|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##AK313984|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##BC012595|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##NM_005868|BET1|10282|blocked early in transport 1 homolog (S. cerevisiae)##NM_004126|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC009709|GNG11|2791|guanine nucleotide binding protein (G protein), gamma 11##BC029367|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##NM_021955|GNGT1|2792|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1##J03464|COL1A2|1278|collagen, type I, alpha 2##NM_000089|COL1A2|1278|collagen, type I, alpha 2##X02488|COL1A2|1278|collagen, type I, alpha 2##AK297786|COL1A2|1278|collagen, type I, alpha 2##AK223175|COL1A2|1278|collagen, type I, alpha 2##AK300194|COL1A2|1278|collagen, type I, alpha 2##Z74616|COL1A2|1278|collagen, type I, alpha 2##AK226074|COL1A2|1278|collagen, type I, alpha 2##BC042586|COL1A2|1278|collagen, type I, alpha 2##BC054498|COL1A2|1278|collagen, type I, alpha 2##Y00724|COL1A2|1278|collagen, type I, alpha 2##BC029543|CASD1|64921|CAS1 domain containing 1##NM_022900|CASD1|64921|CAS1 domain containing 1##BC063284|CASD1|64921|CAS1 domain containing 1##AF397424|CASD1|64921|CAS1 domain containing 1	0.0	0.0	
chr9	19161812	19161918	reg1012045.p2	3.818	+	TSC_hg19_v1_chr9_-_19127517 AK297920 NM_001122	-34317	-	TSC_hg19_v1_chr9_-_19127491 BC005127 AK296125 AK312983	-34388	-	TSC_hg19_v1_chr9_-_19102926 AF533709	-58856	-	NM_017925 BC144484 BC144485	128886	+	TSC_hg19_v1_chr9_-_19378815 BC035447	217001	-	BC013296 BC094826 AB062123 BC071907 BC071908 AK311861 AK291517 BC027620 D28348 TSC_hg19_v1_chr9_-_19380235 NM_001010	218362	-	AK297920|PLIN2|123|perilipin 2##NM_001122|PLIN2|123|perilipin 2##BC005127|PLIN2|123|perilipin 2##AK296125|PLIN2|123|perilipin 2##AK312983|PLIN2|123|perilipin 2##AF533709|HAUS6|54801|HAUS augmin-like complex, subunit 6##NM_017925|DENND4C|55667|DENN/MADD domain containing 4C##BC144484|DENND4C|55667|DENN/MADD domain containing 4C##BC144485|DENND4C|55667|DENN/MADD domain containing 4C##BC035447|RPS6|6194|ribosomal protein S6##BC013296|RPS6|6194|ribosomal protein S6##BC094826|RPS6|6194|ribosomal protein S6##AB062123|RPS6|6194|ribosomal protein S6##BC071907|RPS6|6194|ribosomal protein S6##BC071908|RPS6|6194|ribosomal protein S6##AK311861|RPS6|6194|ribosomal protein S6##AK291517|RPS6|6194|ribosomal protein S6##BC027620|RPS6|6194|ribosomal protein S6##D28348|RPS6|6194|ribosomal protein S6##NM_001010|RPS6|6194|ribosomal protein S6	0.0	0.0	
chrX	19700789	19700855	reg1011375.p1	3.818	+	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-11766	-	NM_001001671	-167444	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-338740	+	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	117053	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	117090	-	TSC_hg19_v1_chrX_-_19905450 AY542305	204641	-	AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.0	0.0	
chrX	41721816	41721908	reg1016583.p1	3.818	+	BC070180 NM_080817 AK122626 AK313702 AL832460	-138442	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-173595	+	AJ278865 AF254868 NM_022567	-415163	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	60463	-	BC044787 TSC_hg19_v1_chrX_+_43514289	1792361	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	1793552	+	BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##AJ278865|NYX|60506|nyctalopin##AF254868|NYX|60506|nyctalopin##NM_022567|NYX|60506|nyctalopin##AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A	0.991068	0.0	
chr17	74456091	74456182	reg1018276.p2	3.817	+	BC092430 NM_001166579	-6704	+	TSC_hg19_v1_chr17_-_74449273 AB051521 NM_022066	-6848	-	BC007822 TSC_hg19_v1_chr17_-_74449235	-6893	-	NM_001088 U40347 AB593119 BC069434	7521	+	AK303434 AY500247 AK292166 NM_001005498	27762	-	TSC_hg19_v1_chr17_-_74497506 BC016034 AK292135 NM_024599	41323	-	BC092430|AANAT|15|aralkylamine N-acetyltransferase##NM_001166579|AANAT|15|aralkylamine N-acetyltransferase##AB051521|UBE2O|63893|ubiquitin-conjugating enzyme E2O##NM_022066|UBE2O|63893|ubiquitin-conjugating enzyme E2O##BC007822|UBE2O|63893|ubiquitin-conjugating enzyme E2O##NM_001088|AANAT|15|aralkylamine N-acetyltransferase##U40347|AANAT|15|aralkylamine N-acetyltransferase##AB593119|AANAT|15|aralkylamine N-acetyltransferase##BC069434|AANAT|15|aralkylamine N-acetyltransferase##AK303434|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AY500247|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292166|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_001005498|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##BC016034|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##AK292135|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)##NM_024599|RHBDF2|79651|rhomboid 5 homolog 2 (Drosophila)	1.991985	0.0	denovo_WM_7:84:0.248	denovo_WM_7:85:0.213	denovo_WM_7:104:0.214	denovo_WM_7:105:0.249
chr2	231589459	231589558	reg1015834.p1	3.817	+	AK292382 NM_001130849 NM_001130850 AK315692	-11230	+	TSC_hg19_v1_chr2_+_231577633 BC020570	-11864	+	TSC_hg19_v1_chr2_+_231577556 NM_016289	-11962	+	TSC_hg19_v1_chr2_+_231729608 NM_001012514 NM_001012516 NM_030926	140052	+	TSC_hg19_v1_chr2_+_231729626 AF271781 AF272043	140121	+	TSC_hg19_v1_chr2_+_231729653 AK075361 AK090975 AK303199 AX746713	140137	+	AK292382|CAB39|51719|calcium binding protein 39##NM_001130849|CAB39|51719|calcium binding protein 39##NM_001130850|CAB39|51719|calcium binding protein 39##AK315692|CAB39|51719|calcium binding protein 39##BC020570|CAB39|51719|calcium binding protein 39##NM_016289|CAB39|51719|calcium binding protein 39##NM_001012514|ITM2C|81618|integral membrane protein 2C##NM_001012516|ITM2C|81618|integral membrane protein 2C##NM_030926|ITM2C|81618|integral membrane protein 2C##AF271781|ITM2C|81618|integral membrane protein 2C##AF272043|ITM2C|81618|integral membrane protein 2C##AK075361|ITM2C|81618|integral membrane protein 2C##AK090975|ITM2C|81618|integral membrane protein 2C##AK303199|ITM2C|81618|integral membrane protein 2C	1.987844	0.0	denovo_WM_7:-30:0.237	denovo_WM_7:-31:0.237	denovo_WM_7:-32:0.237	denovo_WM_7:-33:0.237
chr3	133286009	133286114	reg1014690.p2	3.817	+	NM_003571 BC113518 BC113520 HQ258421 U48224	-167203	+	TSC_hg19_v1_chr3_+_132757234 AY358381 BC000568	-528827	+	NM_001136469 NM_023943 TSC_hg19_v1_chr3_+_132757202	-528874	+	TSC_hg19_v1_chr3_+_133292443 NM_001134422 NM_017548	6415	+	TSC_hg19_v1_chr3_+_133292588 AF103803	6511	+	TSC_hg19_v1_chr3_+_133292835 BC007338	6733	+	NM_003571|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113518|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113520|BFSP2|8419|beaded filament structural protein 2, phakinin##HQ258421|BFSP2|8419|beaded filament structural protein 2, phakinin##U48224|BFSP2|8419|beaded filament structural protein 2, phakinin##AY358381|TMEM108|66000|transmembrane protein 108##BC000568|TMEM108|66000|transmembrane protein 108##NM_001136469|TMEM108|66000|transmembrane protein 108##NM_023943|TMEM108|66000|transmembrane protein 108##NM_001134422|CDV3|55573|CDV3 homolog (mouse)##NM_017548|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)	0.0	0.0	
chr5	180594305	180594428	reg1013863.p2	3.817	+	NM_206880	-12424	+	AK298113 TSC_hg19_v1_chr5_+_180467271 BC062459	-127051	+	NM_152547 TSC_hg19_v1_chr5_+_180467233 AK057097 AY358358	-127129	+	AF396655 NM_203297	33563	-	AF396652 AF396653 NM_203294 NM_203295 NM_203296	36973	-	DQ892585 DQ895803 BC080553 BC011567 AK314872 AF396651 AX776005 BC132863 BC132867 NM_033342 NM_203293 TSC_hg19_v1_chr5_-_180632192 AF220032	37835	-	NM_206880|OR2V2|285659|olfactory receptor, family 2, subfamily V, member 2##AK298113|BTNL9|153579|butyrophilin-like 9##BC062459|BTNL9|153579|butyrophilin-like 9##NM_152547|BTNL9|153579|butyrophilin-like 9##AK057097|BTNL9|153579|butyrophilin-like 9##AY358358|BTNL9|153579|butyrophilin-like 9##AF396655|TRIM7|81786|tripartite motif containing 7##NM_203297|TRIM7|81786|tripartite motif containing 7##AF396652|TRIM7|81786|tripartite motif containing 7##AF396653|TRIM7|81786|tripartite motif containing 7##NM_203294|TRIM7|81786|tripartite motif containing 7##NM_203295|TRIM7|81786|tripartite motif containing 7##NM_203296|TRIM7|81786|tripartite motif containing 7##DQ892585|TRIM7|81786|tripartite motif containing 7##DQ895803|TRIM7|81786|tripartite motif containing 7##BC080553|TRIM7|81786|tripartite motif containing 7##BC011567|TRIM7|81786|tripartite motif containing 7##AK314872|TRIM7|81786|tripartite motif containing 7##AF396651|TRIM7|81786|tripartite motif containing 7##BC132863|TRIM7|81786|tripartite motif containing 7##BC132867|TRIM7|81786|tripartite motif containing 7##NM_033342|TRIM7|81786|tripartite motif containing 7##NM_203293|TRIM7|81786|tripartite motif containing 7##AF220032|TRIM7|81786|tripartite motif containing 7	0.0	0.0	
chr5	32535807	32535873	reg1007720.p1	3.817	+	TSC_hg19_v1_chr5_-_32444845 AK292214 AK309638 BC017879 NM_016107	-90904	-	TSC_hg19_v1_chr5_-_32444820 BC107417 AJ314790 BC030540 BC137084 BC137085	-91062	-	TSC_hg19_v1_chr5_-_32403324 BC062986 BC051893	-132487	-	NM_006713 TSC_hg19_v1_chr5_+_32585676 AK294124 AK311754 BC022339 AK307268 BC009610 BC018189 BC071655 BC063402 BC010537 BC105972 AB209285	49816	+	NM_001204376 AK300094 AK308301	174910	+	AK290870 NM_000908 NM_001204375 M59305	175648	+	AK292214|ZFR|51663|zinc finger RNA binding protein##AK309638|ZFR|51663|zinc finger RNA binding protein##BC017879|ZFR|51663|zinc finger RNA binding protein##NM_016107|ZFR|51663|zinc finger RNA binding protein##BC107417|ZFR|51663|zinc finger RNA binding protein##AJ314790|ZFR|51663|zinc finger RNA binding protein##BC030540|ZFR|51663|zinc finger RNA binding protein##BC137084|ZFR|51663|zinc finger RNA binding protein##BC137085|ZFR|51663|zinc finger RNA binding protein##BC062986|ZFR|51663|zinc finger RNA binding protein##BC051893|ZFR|51663|zinc finger RNA binding protein##NM_006713|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK294124|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK311754|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC022339|SUB1|10923|SUB1 homolog (S. cerevisiae)##AK307268|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC009610|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC018189|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC071655|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC063402|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC010537|SUB1|10923|SUB1 homolog (S. cerevisiae)##BC105972|SUB1|10923|SUB1 homolog (S. cerevisiae)##AB209285|SUB1|10923|SUB1 homolog (S. cerevisiae)##NM_001204376|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK300094|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK308301|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##AK290870|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_000908|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##NM_001204375|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)##M59305|NPR3|4883|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)	0.995429	0.0	denovo_WM_7:-76:0.847
chr6_qbl_hap6	2460731	2460825	reg1012434.p1	3.817	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.0	
chr7	66144218	66144332	reg1014538.p1	3.817	+	BC042482 TSC_hg19_v1_chr7_+_66093944 AK056631 AK127790	-50333	+	TSC_hg19_v1_chr7_+_66093867 NM_001167961 NM_153033	-50401	+	TSC_hg19_v1_chr7_-_66057374 BC080520 BC057835 BC067867 AK310548 BC103766 AK310370 AK296922	-86914	-	TSC_hg19_v1_chr7_+_66147121 AK056864	2865	+	NM_014504 TSC_hg19_v1_chr7_+_66205645	61369	+	TSC_hg19_v1_chr7_+_66205692 BC015330	61419	+	BC042482|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK056631|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_001167961|KCTD7|154881|potassium channel tetramerisation domain containing 7##NM_153033|KCTD7|154881|potassium channel tetramerisation domain containing 7##AK310548|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##BC103766|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK310370|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK296922|LOC493754|493754|RAB guanine nucleotide exchange factor (GEF) 1 pseudogene##AK056864|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##NM_014504|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1##BC015330|RABGEF1|27342|RAB guanine nucleotide exchange factor (GEF) 1	0.990108	0.0	denovo_WM_7:31:0.871
chr12	102220875	102220997	reg1008292.p2	3.816	+	AF492003 AF517774 BC062662 AK125930 NM_001177948 NM_001177949 NM_153694	-87717	-	TSC_hg19_v1_chr12_+_102091462 NM_020244 BC050429 AK075211 AK093067 BC020819 AF195623 AF195624 AK226127 AF047431	-129314	+	AK296681 NM_002465 NM_206819 NM_206820 NM_206821 AK056587 AK292976 AK295727 AK303401 BC015187 BC030980 BC065720 TSC_hg19_v1_chr12_+_101988748 BC092418 X66276 X73114 AL831993 AL832000 AL832332 AL832350 AL832354 AL832456 BC117217 BC143495 BC143502 BC143503 BC143504 AL834249 BX649073 AB385254 AM392734 EU831907 EU832001	-232140	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	3650	-	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	50182	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	50522	+	AF492003|SYCP3|50511|synaptonemal complex protein 3##AF517774|SYCP3|50511|synaptonemal complex protein 3##BC062662|SYCP3|50511|synaptonemal complex protein 3##AK125930|SYCP3|50511|synaptonemal complex protein 3##NM_001177948|SYCP3|50511|synaptonemal complex protein 3##NM_001177949|SYCP3|50511|synaptonemal complex protein 3##NM_153694|SYCP3|50511|synaptonemal complex protein 3##NM_020244|CHPT1|56994|choline phosphotransferase 1##BC050429|CHPT1|56994|choline phosphotransferase 1##AK075211|CHPT1|56994|choline phosphotransferase 1##AK093067|CHPT1|56994|choline phosphotransferase 1##BC020819|CHPT1|56994|choline phosphotransferase 1##AF195623|CHPT1|56994|choline phosphotransferase 1##AF195624|CHPT1|56994|choline phosphotransferase 1##AK226127|CHPT1|56994|choline phosphotransferase 1##AF047431|CHPT1|56994|choline phosphotransferase 1##AK296681|MYBPC1|4604|myosin binding protein C, slow type##NM_002465|MYBPC1|4604|myosin binding protein C, slow type##NM_206819|MYBPC1|4604|myosin binding protein C, slow type##NM_206820|MYBPC1|4604|myosin binding protein C, slow type##NM_206821|MYBPC1|4604|myosin binding protein C, slow type##AK056587|MYBPC1|4604|myosin binding protein C, slow type##AK292976|MYBPC1|4604|myosin binding protein C, slow type##AK295727|MYBPC1|4604|myosin binding protein C, slow type##AK303401|MYBPC1|4604|myosin binding protein C, slow type##BC015187|MYBPC1|4604|myosin binding protein C, slow type##BC030980|MYBPC1|4604|myosin binding protein C, slow type##BC065720|MYBPC1|4604|myosin binding protein C, slow type##BC092418|MYBPC1|4604|myosin binding protein C, slow type##X66276|MYBPC1|4604|myosin binding protein C, slow type##X73114|MYBPC1|4604|myosin binding protein C, slow type##AL831993|MYBPC1|4604|myosin binding protein C, slow type##AL832000|MYBPC1|4604|myosin binding protein C, slow type##AL832332|MYBPC1|4604|myosin binding protein C, slow type##AL832350|MYBPC1|4604|myosin binding protein C, slow type##AL832354|MYBPC1|4604|myosin binding protein C, slow type##AL832456|MYBPC1|4604|myosin binding protein C, slow type##BC117217|MYBPC1|4604|myosin binding protein C, slow type##BC143495|MYBPC1|4604|myosin binding protein C, slow type##BC143502|MYBPC1|4604|myosin binding protein C, slow type##BC143503|MYBPC1|4604|myosin binding protein C, slow type##BC143504|MYBPC1|4604|myosin binding protein C, slow type##AL834249|MYBPC1|4604|myosin binding protein C, slow type##BX649073|MYBPC1|4604|myosin binding protein C, slow type##AM392734|MYBPC1|4604|myosin binding protein C, slow type##EU831907|MYBPC1|4604|myosin binding protein C, slow type##EU832001|MYBPC1|4604|myosin binding protein C, slow type##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1	0.0	0.0	
chr12	8111418	8111556	reg1015712.p1	3.816	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	-22721	-	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-67719	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-86021	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	74003	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	107466	-	TSC_hg19_v1_chr12_-_8219032 U62027	107529	-	CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1##U62027|C3AR1|719|complement component 3a receptor 1	0.999036	0.0	denovo_WM_7:-13:0.963
chr18	47886268	47886335	reg1014642.p1	3.816	+	BX647189 NM_001101654 NM_014593	-71610	-	AB031069 AF149758 AK314886 TSC_hg19_v1_chr18_-_47814205 AK294645	-72094	-	TSC_hg19_v1_chr18_-_47814047 BC002504 BC014940	-72265	-	TSC_hg19_v1_chr18_+_47901415 NM_001039535 NM_145060 BC015706 AK313968 AK303464	15096	+	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	200196	+	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	460064	-	BX647189|CXXC1|30827|CXXC finger protein 1##NM_001101654|CXXC1|30827|CXXC finger protein 1##NM_014593|CXXC1|30827|CXXC finger protein 1##AB031069|CXXC1|30827|CXXC finger protein 1##AF149758|CXXC1|30827|CXXC finger protein 1##AK314886|CXXC1|30827|CXXC finger protein 1##AK294645|CXXC1|30827|CXXC finger protein 1##BC002504|CXXC1|30827|CXXC finger protein 1##BC014940|CXXC1|30827|CXXC finger protein 1##NM_001039535|SKA1|220134|spindle and kinetochore associated complex subunit 1##NM_145060|SKA1|220134|spindle and kinetochore associated complex subunit 1##BC015706|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK313968|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK303464|SKA1|220134|spindle and kinetochore associated complex subunit 1##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro	0.0	0.0	
chr3	182227677	182227795	reg1013165.p1	3.816	+	BC013923 L07335 Z31560 AB464715 EU446654 TSC_hg19_v1_chr3_+_181430202	-797598	+	NM_003106 TSC_hg19_v1_chr3_+_181429713 AK312595	-798023	+	BC016393 TSC_hg19_v1_chr3_+_181417398 AL157425	-810344	+	TSC_hg19_v1_chr3_+_182511288 BC042180 NM_014616	283551	+	AK296750 TSC_hg19_v1_chr3_+_182511291	283559	+	TSC_hg19_v1_chr3_+_182511375 AF156548	283653	+	BC013923|SOX2|6657|SRY (sex determining region Y)-box 2##L07335|SOX2|6657|SRY (sex determining region Y)-box 2##Z31560|SOX2|6657|SRY (sex determining region Y)-box 2##EU446654|SOX2|6657|SRY (sex determining region Y)-box 2##NM_003106|SOX2|6657|SRY (sex determining region Y)-box 2##BC016393|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##AL157425|SOX2-OT|347689|SOX2 overlapping transcript (non-protein coding)##BC042180|ATP11B|23200|ATPase, class VI, type 11B##NM_014616|ATP11B|23200|ATPase, class VI, type 11B##AK296750|ATP11B|23200|ATPase, class VI, type 11B##AF156548|ATP11B|23200|ATPase, class VI, type 11B	0.096712	0.0	
chr7	89478459	89478639	reg1015372.p1	3.816	+	BC028365 NM_152706	-1053519	-	BC140826 BC140829 AK056672 AY295769 NM_181646	-1089833	+	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	-1542335	-	NM_012449 TSC_hg19_v1_chr7_+_89783782 AK308452 BC011802	305188	+	AK304076 TSC_hg19_v1_chr7_+_89783791 AF186249	305263	+	AF455138 NM_001244944 NM_001244945 NM_152999 AK092666 AX747660 TSC_hg19_v1_chr7_+_89841171 AY008443 AY008444 AY008445 NM_001040665 NM_001244946 AK315043	362566	+	BC028365|C7orf62|219557|chromosome 7 open reading frame 62##NM_152706|C7orf62|219557|chromosome 7 open reading frame 62##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B##BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##NM_012449|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK308452|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##BC011802|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK304076|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF186249|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF455138|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244944|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244945|STEAP2|261729|STEAP family member 2, metalloreductase##NM_152999|STEAP2|261729|STEAP family member 2, metalloreductase##AK092666|STEAP2|261729|STEAP family member 2, metalloreductase##AY008443|STEAP2|261729|STEAP family member 2, metalloreductase##AY008444|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001040665|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244946|STEAP2|261729|STEAP family member 2, metalloreductase##AK315043|STEAP2|261729|STEAP family member 2, metalloreductase	0.0	0.0	
chr8	56681438	56681555	reg1012060.p1	3.816	+	BC106028 AY534241 NM_052898	-666482	+	AF141021 NM_006269 DQ980612 DQ980613 DQ980614 AF143222 AF146592 DQ980615	-1152844	+	AK025905 NM_022454 TSC_hg19_v1_chr8_+_55370494 BC030209 BC111770 BC111365	-1310980	+	AF286340 NM_024831	4249	+	AK308247 AK056932 NM_152417 BC020835 BC071636	4401	-	TSC_hg19_v1_chr8_+_56686028 AY028423 AK314693 BX648548 AF432215	4524	+	AY534241|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4##NM_052898|XKR4|114786|XK, Kell blood group complex subunit-related family, member 4##AF141021|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##NM_006269|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980612|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980613|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980614|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF143222|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AF146592|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##DQ980615|RP1|6101|retinitis pigmentosa 1 (autosomal dominant)##AK025905|SOX17|64321|SRY (sex determining region Y)-box 17##NM_022454|SOX17|64321|SRY (sex determining region Y)-box 17##BC030209|SOX17|64321|SRY (sex determining region Y)-box 17##BC111770|SOX17|64321|SRY (sex determining region Y)-box 17##BC111365|SOX17|64321|SRY (sex determining region Y)-box 17##AF286340|TGS1|96764|trimethylguanosine synthase 1##NM_024831|TGS1|96764|trimethylguanosine synthase 1##AK308247|TMEM68|137695|transmembrane protein 68##AK056932|TMEM68|137695|transmembrane protein 68##NM_152417|TMEM68|137695|transmembrane protein 68##BC020835|TMEM68|137695|transmembrane protein 68##BC071636|TMEM68|137695|transmembrane protein 68##AY028423|TGS1|96764|trimethylguanosine synthase 1##AK314693|TGS1|96764|trimethylguanosine synthase 1##BX648548|TGS1|96764|trimethylguanosine synthase 1##AF432215|TGS1|96764|trimethylguanosine synthase 1	1.987898	0.0	denovo_WM_7:-85:0.779
chr10	17243880	17243987	reg1009625.p2	3.815	+	TSC_hg19_v1_chr10_-_17243660 CR450316 AF045888 AK291417 AF012128 BC047733 AK303428 BX537961 AJ223333 AK299027	-200	-	AF034611 NM_001081 TSC_hg19_v1_chr10_-_17171878	-72100	-	TSC_hg19_v1_chr10_-_16859451 BC015644 BC005993 BC107898 BX647733 NM_012425 NM_152724	-384498	-	NM_004412	136	-	NM_003380	26324	+	BC066956 TSC_hg19_v1_chr10_+_17270601	26603	+	CR450316|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF045888|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK291417|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF012128|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BC047733|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK303428|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##BX537961|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AJ223333|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AK299027|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##AF034611|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##NM_001081|CUBN|8029|cubilin (intrinsic factor-cobalamin receptor)##BC015644|RSU1|6251|Ras suppressor protein 1##BC005993|RSU1|6251|Ras suppressor protein 1##BC107898|RSU1|6251|Ras suppressor protein 1##BX647733|RSU1|6251|Ras suppressor protein 1##NM_012425|RSU1|6251|Ras suppressor protein 1##NM_152724|RSU1|6251|Ras suppressor protein 1##NM_004412|TRDMT1|1787|tRNA aspartic acid methyltransferase 1##NM_003380|VIM|7431|vimentin##BC066956|VIM|7431|vimentin	0.0	0.0	
chr12	92899503	92899636	reg1015185.p2	3.815	+	AJ845168 NM_001025232	-77646	-	AJ845165 AJ845166 NM_001025233	-81835	+	BC016759 BC064953 X61123 TSC_hg19_v1_chr12_-_92539622 AK313309 AK307057 NM_001731	-359926	-	NM_001037671 NM_001178097	197049	+	NM_001004330 AK128530	230718	+	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	423369	-	AJ845168|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##NM_001025232|CLLU1OS|574016|chronic lymphocytic leukemia up-regulated 1 opposite strand##AJ845165|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##AJ845166|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##NM_001025233|CLLU1|574028|chronic lymphocytic leukemia up-regulated 1##BC016759|BTG1|694|B-cell translocation gene 1, anti-proliferative##BC064953|BTG1|694|B-cell translocation gene 1, anti-proliferative##X61123|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK313309|BTG1|694|B-cell translocation gene 1, anti-proliferative##AK307057|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001731|BTG1|694|B-cell translocation gene 1, anti-proliferative##NM_001037671|C12orf74|338809|chromosome 12 open reading frame 74##NM_001178097|C12orf74|338809|chromosome 12 open reading frame 74##NM_001004330|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##AK128530|PLEKHG7|440107|pleckstrin homology domain containing, family G (with RhoGef domain) member 7##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1	0.0	0.0	
chr13	73478417	73478521	reg1012698.p1	3.815	+	TSC_hg19_v1_chr13_+_73356270 NM_006346 AK309828 BC006009 BC008432 BC041806 BC051911 AY370776 AY375528	-122159	+	BC056143 TSC_hg19_v1_chr13_-_73356083 AK314715 BC038101 NM_001128226 NM_014953	-122263	-	AL832266 TSC_hg19_v1_chr13_-_73356067 AB023225 BC012468	-122407	-	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	154735	+	AF161471 AF113122 NM_007249	1229520	-	TSC_hg19_v1_chr13_-_74708425 AK291397	1229927	-	NM_006346|PIBF1|10464|progesterone immunomodulatory binding factor 1##AK309828|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC006009|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC008432|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC041806|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC051911|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY370776|PIBF1|10464|progesterone immunomodulatory binding factor 1##AY375528|PIBF1|10464|progesterone immunomodulatory binding factor 1##BC056143|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK314715|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC038101|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_001128226|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##NM_014953|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AL832266|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AB023225|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##BC012468|DIS3|22894|DIS3 mitotic control homolog (S. cerevisiae)##AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK291397|KLF12|11278|Kruppel-like factor 12	0.867753	0.0	denovo_WM_7:105:0.868
chr14	69531211	69531279	reg1019477.p1	3.815	+	TSC_hg19_v1_chr14_-_69446038 NM_001102 NM_001130004 NM_001130005	-85182	-	TSC_hg19_v1_chr14_-_69446010 BC003576	-85236	-	TSC_hg19_v1_chr14_-_69445990 BC004984	-85253	-	TSC_hg19_v1_chr14_-_69619315 AL831932	88097	-	TSC_hg19_v1_chr14_-_69619740 AB463347 CU692762 BC022967 BX648006 AB058727	88430	-	TSC_hg19_v1_chr14_-_69619843 BC136632	88599	-	NM_001102|ACTN1|87|actinin, alpha 1##NM_001130004|ACTN1|87|actinin, alpha 1##NM_001130005|ACTN1|87|actinin, alpha 1##BC003576|ACTN1|87|actinin, alpha 1##BC004984|ACTN1|87|actinin, alpha 1##AL831932|DCAF5|8816|DDB1 and CUL4 associated factor 5##BC022967|DCAF5|8816|DDB1 and CUL4 associated factor 5##BX648006|DCAF5|8816|DDB1 and CUL4 associated factor 5##AB058727|DCAF5|8816|DDB1 and CUL4 associated factor 5##BC136632|DCAF5|8816|DDB1 and CUL4 associated factor 5	0.0	0.0	
chr2	220867508	220867615	reg1015916.p1	3.815	+	AY142112 NM_005070 NM_201574 AK314083 AK309025 AK289974 AK226122 BC146656	-375207	+	TSC_hg19_v1_chr2_+_220462589 AK295609 AK300611 AK296632 AK299894 BC034051 NM_052902 AF450267	-404972	+	M13981 NM_002191 BC039076 BC006391 TSC_hg19_v1_chr2_+_220437031 BT006954 CU675381 DQ890602 DQ893773 M13144	-430515	+	BC036860 BC026327 L36645 BC105000 BC105002 NM_004438 AK300772 TSC_hg19_v1_chr2_-_222437025 AK225181 AK312380	1569449	-	L07483 U02309 TSC_hg19_v1_chr2_-_223159109	2291459	-	AK057009 NM_153038 BC109388	2295351	+	AY142112|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_005070|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_201574|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK314083|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK309025|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK289974|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK226122|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##BC146656|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK295609|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK300611|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK296632|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK299894|STK11IP|114790|serine/threonine kinase 11 interacting protein##BC034051|STK11IP|114790|serine/threonine kinase 11 interacting protein##NM_052902|STK11IP|114790|serine/threonine kinase 11 interacting protein##AF450267|STK11IP|114790|serine/threonine kinase 11 interacting protein##M13981|INHA|3623|inhibin, alpha##NM_002191|INHA|3623|inhibin, alpha##BC039076|INHA|3623|inhibin, alpha##BC006391|INHA|3623|inhibin, alpha##BT006954|INHA|3623|inhibin, alpha##DQ890602|INHA|3623|inhibin, alpha##DQ893773|INHA|3623|inhibin, alpha##M13144|INHA|3623|inhibin, alpha##BC026327|EPHA4|2043|EPH receptor A4##L36645|EPHA4|2043|EPH receptor A4##BC105000|EPHA4|2043|EPH receptor A4##BC105002|EPHA4|2043|EPH receptor A4##NM_004438|EPHA4|2043|EPH receptor A4##AK300772|EPHA4|2043|EPH receptor A4##AK225181|EPHA4|2043|EPH receptor A4##AK312380|EPHA4|2043|EPH receptor A4##L07483|PAX3|5077|paired box 3##U02309|PAX3|5077|paired box 3##AK057009|CCDC140|151278|coiled-coil domain containing 140##NM_153038|CCDC140|151278|coiled-coil domain containing 140##BC109388|CCDC140|151278|coiled-coil domain containing 140	0.99973	0.0	denovo_WM_7:-10:0.419	denovo_WM_7:-11:0.419
chr2	68519380	68519465	reg1016758.p1	3.815	+	TSC_hg19_v1_chr2_-_68479665 AK307136 AK314893 BC027913 NM_000945	-39827	-	TSC_hg19_v1_chr2_+_68384999 BC008304 NM_020143 AK291715 AF349314 AF164799 AK313204 AK223118 L48692 AK225641 BC018152	-134325	+	CU680746 EU831464 EU831551 EU832799 GQ129363 TSC_hg19_v1_chr2_-_68384660 BC036904 BC014022 AL834142 BC066657 BC020271 AK056303 NM_138458 AY541587 AK058090	-134788	-	AK308979 TSC_hg19_v1_chr2_-_68547079 NM_001111101 NM_015463	27678	-	TSC_hg19_v1_chr2_+_68592413 NM_002664 AK313756 BC018549 X07743 AB208967	72950	+	TSC_hg19_v1_chr2_+_68592449 DQ893586 DQ894896 CU676266 AB528939 CR542056 CR542079	73035	+	AK307136|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##AK314893|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC027913|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##NM_000945|PPP3R1|5534|protein phosphatase 3, regulatory subunit B, alpha##BC008304|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##NM_020143|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK291715|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF349314|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AF164799|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK313204|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK223118|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##AK225641|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##BC018152|PNO1|56902|partner of NOB1 homolog (S. cerevisiae)##EU831464|WDR92|116143|WD repeat domain 92##EU831551|WDR92|116143|WD repeat domain 92##EU832799|WDR92|116143|WD repeat domain 92##GQ129363|WDR92|116143|WD repeat domain 92##BC036904|WDR92|116143|WD repeat domain 92##BC014022|WDR92|116143|WD repeat domain 92##AL834142|WDR92|116143|WD repeat domain 92##BC066657|WDR92|116143|WD repeat domain 92##BC020271|WDR92|116143|WD repeat domain 92##AK056303|WDR92|116143|WD repeat domain 92##NM_138458|WDR92|116143|WD repeat domain 92##AY541587|WDR92|116143|WD repeat domain 92##AK058090|WDR92|116143|WD repeat domain 92##NM_001111101|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_015463|CNRIP1|25927|cannabinoid receptor interacting protein 1##NM_002664|PLEK|5341|pleckstrin##AK313756|PLEK|5341|pleckstrin##BC018549|PLEK|5341|pleckstrin##X07743|PLEK|5341|pleckstrin##AB208967|PLEK|5341|pleckstrin##DQ893586|PLEK|5341|pleckstrin##DQ894896|PLEK|5341|pleckstrin##CR542056|PLEK|5341|pleckstrin##CR542079|PLEK|5341|pleckstrin	1.011037	0.0	denovo_WM_7:-57:0.757
chr4	86718188	86718288	reg1015701.p1	3.815	+	BC098580 TSC_hg19_v1_chr4_+_86699865 AK098193	-18340	+	TSC_hg19_v1_chr4_+_86699850 NM_001042669	-18390	+	TSC_hg19_v1_chr4_+_86396423 NM_001025616 AK091196 AX746841 BC047918	-321895	+	AK307423 TSC_hg19_v1_chr4_+_86749064	30816	+	AL136646 NM_031305	133187	+	AK057723 NM_138981	310567	-	BC098580|ARHGAP24|83478|Rho GTPase activating protein 24##AK098193|ARHGAP24|83478|Rho GTPase activating protein 24##NM_001042669|ARHGAP24|83478|Rho GTPase activating protein 24##NM_001025616|ARHGAP24|83478|Rho GTPase activating protein 24##AK091196|ARHGAP24|83478|Rho GTPase activating protein 24##BC047918|ARHGAP24|83478|Rho GTPase activating protein 24##AK307423|ARHGAP24|83478|Rho GTPase activating protein 24##AL136646|ARHGAP24|83478|Rho GTPase activating protein 24##NM_031305|ARHGAP24|83478|Rho GTPase activating protein 24##AK057723|MAPK10|5602|mitogen-activated protein kinase 10##NM_138981|MAPK10|5602|mitogen-activated protein kinase 10	1.858018	0.644112	CTCF.p2:20:0.644	denovo_WM_7:78:0.495	denovo_WM_7:96:0.478	denovo_WM_7:99:0.313
chr7	106766863	106766960	reg1009700.p1	3.815	+	TSC_hg19_v1_chr7_+_106685154 BC075800 M31158 NM_002736 AK128639 AK291441 AB384742 AM392728 AM392771 AM393258 AM393700 CU687290	-81708	+	TSC_hg19_v1_chr7_+_106505893 NM_002649 X83368	-260982	+	TSC_hg19_v1_chr7_+_106505782 AK313753 BX648341 BC035683	-261137	+	AK295910 NM_001244262 TSC_hg19_v1_chr7_+_106809447 AK298504 BC017069 NM_012257	42528	+	NM_005295 AK122621 AK307393	343591	+	TSC_hg19_v1_chr7_-_107204366 HQ258000 AF058718	437499	-	BC075800|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##M31158|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002736|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK128639|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AK291441|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392728|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM392771|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393258|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##AM393700|PRKAR2B|5577|protein kinase, cAMP-dependent, regulatory, type II, beta##NM_002649|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##X83368|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK313753|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BX648341|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##BC035683|PIK3CG|5294|phosphoinositide-3-kinase, catalytic, gamma polypeptide##AK295910|HBP1|26959|HMG-box transcription factor 1##NM_001244262|HBP1|26959|HMG-box transcription factor 1##AK298504|HBP1|26959|HMG-box transcription factor 1##BC017069|HBP1|26959|HMG-box transcription factor 1##NM_012257|HBP1|26959|HMG-box transcription factor 1##NM_005295|GPR22|2845|G protein-coupled receptor 22##AK122621|GPR22|2845|G protein-coupled receptor 22##AK307393|GPR22|2845|G protein-coupled receptor 22##HQ258000|COG5|10466|component of oligomeric golgi complex 5##AF058718|COG5|10466|component of oligomeric golgi complex 5	0.999607	0.0	
chr8	128746300	128746393	reg1017652.p1	3.815	+	DQ486513 NM_001159542	-318490	+	NM_174911 TSC_hg19_v1_chr8_-_127570724	-1175622	-	BC052957 TSC_hg19_v1_chr8_-_127570637 AK292824 AJ417849	-1175791	-	TSC_hg19_v1_chr8_+_128748315 NM_002467 V00568	1979	+	AK303921 TSC_hg19_v1_chr8_+_128748476 AK312883 BC000917 K02276 BC000141	2144	+	TSC_hg19_v1_chr8_+_128806786 M34429 M34430 M34431 M34432 M34428 M25803	60437	+	DQ486513|POU5F1B|5462|POU class 5 homeobox 1B##NM_001159542|POU5F1B|5462|POU class 5 homeobox 1B##NM_174911|FAM84B|157638|family with sequence similarity 84, member B##BC052957|FAM84B|157638|family with sequence similarity 84, member B##AK292824|FAM84B|157638|family with sequence similarity 84, member B##AJ417849|FAM84B|157638|family with sequence similarity 84, member B##NM_002467|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##V00568|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK303921|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##AK312883|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000917|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##K02276|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##BC000141|MYC|4609|v-myc myelocytomatosis viral oncogene homolog (avian)##M34429|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34430|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34431|PVT1|5820|Pvt1 oncogene (non-protein coding)##M34428|PVT1|5820|Pvt1 oncogene (non-protein coding)##M25803|PVT1|5820|Pvt1 oncogene (non-protein coding)	0.0	0.98742	CTCF.p2:14:0.987
chrX	153269892	153270044	reg1015243.p2	3.815	+	NM_003492	-31978	+	TSC_hg19_v1_chrX_-_153236650 L20010 BC063435 NM_005334	-33249	-	BC010606 TSC_hg19_v1_chrX_-_153218266	-51756	-	AF346607 DQ054788 AM392624 AM393211 EU831427 EU831520 AB463802 TSC_hg19_v1_chrX_-_153285300 BC014963	15327	-	TSC_hg19_v1_chrX_-_153285340 BC054000 L76191 NM_001025242 NM_001025243 NM_001569	15369	-	BC062546 TSC_hg19_v1_chrX_-_153363132 AF158180 AY541280	93092	-	NM_003492|TMEM187|8269|transmembrane protein 187##L20010|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##BC063435|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##NM_005334|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##BC010606|HCFC1|3054|host cell factor C1 (VP16-accessory protein)##AF346607|IRAK1|3654|interleukin-1 receptor-associated kinase 1##DQ054788|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM392624|IRAK1|3654|interleukin-1 receptor-associated kinase 1##AM393211|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831427|IRAK1|3654|interleukin-1 receptor-associated kinase 1##EU831520|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC014963|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC054000|IRAK1|3654|interleukin-1 receptor-associated kinase 1##L76191|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025242|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001025243|IRAK1|3654|interleukin-1 receptor-associated kinase 1##NM_001569|IRAK1|3654|interleukin-1 receptor-associated kinase 1##BC062546|LOC728653|728653|uncharacterized LOC728653##AF158180|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)##AY541280|MECP2|4204|methyl CpG binding protein 2 (Rett syndrome)	0.058347	0.0	
chr10	88149622	88149733	reg1014602.p1	3.814	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-23414	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-1964982	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2018059	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	131817	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	131853	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	264717	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.0	0.0	
chr11	131310836	131310907	reg1013798.p2	3.814	+	NM_001048209 AK315964 TSC_hg19_v1_chr11_+_131240520 AK293487 AY358331	-70402	+	TSC_hg19_v1_chr11_-_130786375 NM_014758 AK292457	-524483	-	TSC_hg19_v1_chr11_-_130786371 AK316505 AK304809 AK309202 BC031620 AK316414 D87443	-524526	-	TSC_hg19_v1_chr11_+_131780556 NM_001144058 NM_001144059 NM_016522	469753	+	TSC_hg19_v1_chr11_+_131781303 EF043567 BC050716 CU690778	470468	+	EU562299 BC117254 BC126251 BC143945 BC143946 BC074742 BC074773 L34774 NM_002545 AK289695	1502143	-	NM_001048209|NTM|50863|neurotrimin##AK315964|NTM|50863|neurotrimin##AK293487|NTM|50863|neurotrimin##AY358331|NTM|50863|neurotrimin##NM_014758|SNX19|399979|sorting nexin 19##AK292457|SNX19|399979|sorting nexin 19##AK316505|SNX19|399979|sorting nexin 19##AK304809|SNX19|399979|sorting nexin 19##AK309202|SNX19|399979|sorting nexin 19##BC031620|SNX19|399979|sorting nexin 19##AK316414|SNX19|399979|sorting nexin 19##D87443|SNX19|399979|sorting nexin 19##NM_001144058|NTM|50863|neurotrimin##NM_001144059|NTM|50863|neurotrimin##NM_016522|NTM|50863|neurotrimin##EF043567|NTM|50863|neurotrimin##BC050716|NTM|50863|neurotrimin##EU562299|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC117254|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC126251|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143945|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC143946|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074742|OPCML|4978|opioid binding protein/cell adhesion molecule-like##BC074773|OPCML|4978|opioid binding protein/cell adhesion molecule-like##L34774|OPCML|4978|opioid binding protein/cell adhesion molecule-like##NM_002545|OPCML|4978|opioid binding protein/cell adhesion molecule-like##AK289695|OPCML|4978|opioid binding protein/cell adhesion molecule-like	0.0	0.0	
chr1	244978838	244978941	reg1016318.p1	3.814	+	TSC_hg19_v1_chr1_+_244816472 AF151904 AF229834	-162368	+	TSC_hg19_v1_chr1_+_244816428 BC004485 BC020640	-162481	+	AK314664 TSC_hg19_v1_chr1_+_244816381	-162508	+	TSC_hg19_v1_chr1_+_244998628 AK125259 NM_198076	19820	+	TSC_hg19_v1_chr1_+_244998959 AK130498 BC062419 BC018519	20051	+	TSC_hg19_v1_chr1_+_244998992 AK000866 BC095486 AK300760 BC064399 AF086182	20097	+	AF151904|PPPDE1|51029|PPPDE peptidase domain containing 1##AF229834|PPPDE1|51029|PPPDE peptidase domain containing 1##BC004485|PPPDE1|51029|PPPDE peptidase domain containing 1##BC020640|PPPDE1|51029|PPPDE peptidase domain containing 1##AK314664|PPPDE1|51029|PPPDE peptidase domain containing 1##AK125259|FAM36A|116228|family with sequence similarity 36, member A##NM_198076|FAM36A|116228|family with sequence similarity 36, member A##AK130498|FAM36A|116228|family with sequence similarity 36, member A##BC062419|FAM36A|116228|family with sequence similarity 36, member A##BC018519|FAM36A|116228|family with sequence similarity 36, member A##AK000866|FAM36A|116228|family with sequence similarity 36, member A##BC095486|FAM36A|116228|family with sequence similarity 36, member A##AK300760|FAM36A|116228|family with sequence similarity 36, member A##BC064399|FAM36A|116228|family with sequence similarity 36, member A##AF086182|FAM36A|116228|family with sequence similarity 36, member A	0.990819	0.0	denovo_WM_7:-60:0.237	denovo_WM_7:-61:0.237	denovo_WM_7:-62:0.237	denovo_WM_7:-63:0.237
chr15	91254645	91254753	reg1015721.p1	3.814	+	TSC_hg19_v1_chr15_+_91073154 AK090443 NM_001042574 NM_022769 BC019060 AY360173	-181503	+	TSC_hg19_v1_chr15_+_90931530 BC089385 BC064971 BC139731 BC020549 BC037425 BC110811 AK307643 AB384432	-323160	+	TSC_hg19_v1_chr15_+_90931506 BC005906	-323193	+	TSC_hg19_v1_chr15_+_91260593 BC062697 NM_000057 U39817 BC107423 BC115028 BC115029 BC115030 BC115031 BC115032 AK314262 BC034480 BC101567 BC143280 BC143288 BC093622	5915	+	NM_002569 X17094	157185	+	NM_001143785 AK300605 AK300595 AK309530 NM_002005 AK312545 TSC_hg19_v1_chr15_+_91427733 X52192 BC035357	173002	+	AK090443|CRTC3|64784|CREB regulated transcription coactivator 3##NM_001042574|CRTC3|64784|CREB regulated transcription coactivator 3##NM_022769|CRTC3|64784|CREB regulated transcription coactivator 3##BC019060|CRTC3|64784|CREB regulated transcription coactivator 3##AY360173|CRTC3|64784|CREB regulated transcription coactivator 3##BC089385|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC064971|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC139731|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC020549|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC037425|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC110811|IQGAP1|8826|IQ motif containing GTPase activating protein 1##AK307643|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC005906|IQGAP1|8826|IQ motif containing GTPase activating protein 1##BC062697|BLM|641|Bloom syndrome, RecQ helicase-like##NM_000057|BLM|641|Bloom syndrome, RecQ helicase-like##U39817|BLM|641|Bloom syndrome, RecQ helicase-like##BC107423|BLM|641|Bloom syndrome, RecQ helicase-like##BC115028|BLM|641|Bloom syndrome, RecQ helicase-like##BC115029|BLM|641|Bloom syndrome, RecQ helicase-like##BC115030|BLM|641|Bloom syndrome, RecQ helicase-like##BC115031|BLM|641|Bloom syndrome, RecQ helicase-like##BC115032|BLM|641|Bloom syndrome, RecQ helicase-like##AK314262|BLM|641|Bloom syndrome, RecQ helicase-like##BC034480|BLM|641|Bloom syndrome, RecQ helicase-like##BC101567|BLM|641|Bloom syndrome, RecQ helicase-like##BC143280|BLM|641|Bloom syndrome, RecQ helicase-like##BC143288|BLM|641|Bloom syndrome, RecQ helicase-like##BC093622|BLM|641|Bloom syndrome, RecQ helicase-like##NM_002569|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##X17094|FURIN|5045|furin (paired basic amino acid cleaving enzyme)##NM_001143785|FES|2242|feline sarcoma oncogene##AK300605|FES|2242|feline sarcoma oncogene##AK300595|FES|2242|feline sarcoma oncogene##AK309530|FES|2242|feline sarcoma oncogene##NM_002005|FES|2242|feline sarcoma oncogene##AK312545|FES|2242|feline sarcoma oncogene##X52192|FES|2242|feline sarcoma oncogene##BC035357|FES|2242|feline sarcoma oncogene	0.057566	0.0	
chr17	40756792	40756899	reg1013507.p2	3.814	+	TSC_hg19_v1_chr17_-_40729727 AB528689 GQ851964 GQ851965 AF440240 AB030304 NM_013290 NM_016556 FJ952179 FJ952180 FJ952181 FJ952182 FJ952183 BC008792	-27097	-	TSC_hg19_v1_chr17_+_40719130 AF203978 AK314378 AB527756 BT009812	-37707	+	TSC_hg19_v1_chr17_+_40719119 NM_170607 NM_198204 NM_198205 AF213666 AF213667 AF213668 BC010689 AK290258 AK296114 BC014537 AK000150 AK303221 AK309628 AK315432	-37749	+	BX647175 CU690614 TSC_hg19_v1_chr17_-_40761363	4506	-	NM_001070	4512	+	TSC_hg19_v1_chr17_-_40761382 AK294791	4530	-	GQ851964|PSMC3IP|29893|PSMC3 interacting protein##GQ851965|PSMC3IP|29893|PSMC3 interacting protein##AF440240|PSMC3IP|29893|PSMC3 interacting protein##AB030304|PSMC3IP|29893|PSMC3 interacting protein##NM_013290|PSMC3IP|29893|PSMC3 interacting protein##NM_016556|PSMC3IP|29893|PSMC3 interacting protein##FJ952179|PSMC3IP|29893|PSMC3 interacting protein##FJ952180|PSMC3IP|29893|PSMC3 interacting protein##FJ952181|PSMC3IP|29893|PSMC3 interacting protein##FJ952182|PSMC3IP|29893|PSMC3 interacting protein##FJ952183|PSMC3IP|29893|PSMC3 interacting protein##BC008792|PSMC3IP|29893|PSMC3 interacting protein##AF203978|MLX|6945|MAX-like protein X##AK314378|MLX|6945|MAX-like protein X##BT009812|MLX|6945|MAX-like protein X##NM_170607|MLX|6945|MAX-like protein X##NM_198204|MLX|6945|MAX-like protein X##NM_198205|MLX|6945|MAX-like protein X##AF213666|MLX|6945|MAX-like protein X##AF213667|MLX|6945|MAX-like protein X##AF213668|MLX|6945|MAX-like protein X##BC010689|MLX|6945|MAX-like protein X##AK290258|MLX|6945|MAX-like protein X##AK296114|MLX|6945|MAX-like protein X##BC014537|MLX|6945|MAX-like protein X##AK000150|MLX|6945|MAX-like protein X##AK303221|MLX|6945|MAX-like protein X##AK309628|MLX|6945|MAX-like protein X##AK315432|MLX|6945|MAX-like protein X##BX647175|FAM134C|162427|family with sequence similarity 134, member C##NM_001070|TUBG1|7283|tubulin, gamma 1##AK294791|FAM134C|162427|family with sequence similarity 134, member C	0.0	0.0	
chr20	8714745	8714863	reg1017563.p1	3.814	+	TSC_hg19_v1_chr20_+_8112912 AB011153 AK310597 BC117231 AX721082 AJ278313 AJ278314 BC069420 NM_015192 NM_182734 AB463171 HQ258537	-601774	+	TSC_hg19_v1_chr20_-_8000461 AK075404 BC044777	-714332	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	-714397	-	TSC_hg19_v1_chr20_+_9049689 AK307837 NM_001172646	334879	+	AK307482 TSC_hg19_v1_chr20_+_9049806	334994	+	NM_182797 BC117458 BC143868	483254	+	AB011153|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AK310597|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##BC117231|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AJ278313|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AJ278314|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##BC069420|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##NM_015192|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##NM_182734|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##HQ258537|PLCB1|23236|phospholipase C, beta 1 (phosphoinositide-specific)##AK075404|TMX4|56255|thioredoxin-related transmembrane protein 4##BC044777|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4##AK307837|PLCB4|5332|phospholipase C, beta 4##NM_001172646|PLCB4|5332|phospholipase C, beta 4##AK307482|PLCB4|5332|phospholipase C, beta 4##NM_182797|PLCB4|5332|phospholipase C, beta 4##BC117458|PLCB4|5332|phospholipase C, beta 4##BC143868|PLCB4|5332|phospholipase C, beta 4	0.99968	0.0	
chr3	101715624	101715753	reg1010520.p1	3.814	+	TSC_hg19_v1_chr3_+_101568357 AK091782 AX747180 BC060800 NM_031419 AB037925	-147314	+	NM_001005474 AB074898 AF548362 DQ224339 AK054787 AF147393	-168728	+	AK289689 NM_001134456	-217403	+	AY090780 NM_175056 BC143817	438179	+	TSC_hg19_v1_chr3_+_105085562 NM_001243280 NM_001243281 NM_001243283 NM_001627 AK054632	3369892	+	TSC_hg19_v1_chr3_+_105085752 AK316113 BC017840 BC057809 BC041127 AL833702 AY644765	3370134	+	AK091782|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##BC060800|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_031419|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB037925|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##NM_001005474|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AB074898|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AF548362|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##DQ224339|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK054787|NFKBIZ|64332|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta##AK289689|FAM55C|91775|family with sequence similarity 55, member C##NM_001134456|FAM55C|91775|family with sequence similarity 55, member C##AY090780|ZPLD1|131368|zona pellucida-like domain containing 1##NM_175056|ZPLD1|131368|zona pellucida-like domain containing 1##BC143817|ZPLD1|131368|zona pellucida-like domain containing 1##NM_001243280|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243281|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001243283|ALCAM|214|activated leukocyte cell adhesion molecule##NM_001627|ALCAM|214|activated leukocyte cell adhesion molecule##AK054632|ALCAM|214|activated leukocyte cell adhesion molecule##AK316113|ALCAM|214|activated leukocyte cell adhesion molecule##BC057809|ALCAM|214|activated leukocyte cell adhesion molecule##BC041127|ALCAM|214|activated leukocyte cell adhesion molecule##AL833702|ALCAM|214|activated leukocyte cell adhesion molecule##AY644765|ALCAM|214|activated leukocyte cell adhesion molecule	0.99761	0.0	denovo_WM_7:26:0.478	denovo_WM_7:29:0.318
chr4	4494404	4494584	reg1016129.p2	3.814	+	TSC_hg19_v1_chr4_+_4388828 AK299657 AK312288 AK301911	-105675	+	TSC_hg19_v1_chr4_+_4388753 AX775767 BC001745	-105750	+	AK125172 NM_001040101 NM_014392	-106512	+	AY453396 BT007150 BT020135 CU677069 AB028741 BC014613 BC071980 TSC_hg19_v1_chr4_-_4543708	49210	-	TSC_hg19_v1_chr4_-_4543741 AK310026	49237	-	TSC_hg19_v1_chr4_-_4543750 NM_016930	49267	-	AK299657|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##AK312288|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##AK301911|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##BC001745|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##AK125172|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##NM_001040101|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##NM_014392|D4S234E|27065|DNA segment on chromosome 4 (unique) 234 expressed sequence##AY453396|STX18|53407|syntaxin 18##BT007150|STX18|53407|syntaxin 18##BT020135|STX18|53407|syntaxin 18##AB028741|STX18|53407|syntaxin 18##BC014613|STX18|53407|syntaxin 18##BC071980|STX18|53407|syntaxin 18##AK310026|STX18|53407|syntaxin 18##NM_016930|STX18|53407|syntaxin 18	0.0	0.0	
chr6	111800060	111800194	reg1005472.p1	3.814	+	TSC_hg19_v1_chr6_+_111580568 BC036115	-219555	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	-219604	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-391332	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	4021	-	BC035823 TSC_hg19_v1_chr6_-_111804371	4226	-	AF071798 NM_002912 TSC_hg19_v1_chr6_-_111804420 AF058701	4297	-	BC036115|KIAA1919|91749|KIAA1919##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##BC035823|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF071798|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##NM_002912|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF058701|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.0	0.0	
chr6	164345877	164345943	reg1015932.p2	3.814	+	AL050218 TSC_hg19_v1_chr6_+_163984651	-361297	+	BC019917 TSC_hg19_v1_chr6_+_163836201 AB590716 DQ323998 EU832828 GQ129383 AY780788 AK027309	-509678	+	TSC_hg19_v1_chr6_+_163835795 AF272349	-510120	+	CU693196 TSC_hg19_v1_chr6_-_165723095 BC026278 NM_144980	1377182	-	AB026816 AF127480 NM_006661 AB020593 NM_001130690 TSC_hg19_v1_chr6_-_166075763	1729786	-	AY203946 TSC_hg19_v1_chr6_-_166076051	1730142	-	AL050218|QKI|9444|QKI, KH domain containing, RNA binding##BC019917|QKI|9444|QKI, KH domain containing, RNA binding##DQ323998|QKI|9444|QKI, KH domain containing, RNA binding##EU832828|QKI|9444|QKI, KH domain containing, RNA binding##GQ129383|QKI|9444|QKI, KH domain containing, RNA binding##AY780788|QKI|9444|QKI, KH domain containing, RNA binding##AK027309|QKI|9444|QKI, KH domain containing, RNA binding##AF272349|QKI|9444|QKI, KH domain containing, RNA binding##BC026278|C6orf118|168090|chromosome 6 open reading frame 118##NM_144980|C6orf118|168090|chromosome 6 open reading frame 118##AB026816|PDE10A|10846|phosphodiesterase 10A##AF127480|PDE10A|10846|phosphodiesterase 10A##NM_006661|PDE10A|10846|phosphodiesterase 10A##AB020593|PDE10A|10846|phosphodiesterase 10A##NM_001130690|PDE10A|10846|phosphodiesterase 10A##AY203946|LOC100132188|100132188|LP7097	0.944022	0.0	denovo_WM_7:-86:0.818
chr6	17470642	17470760	reg1014399.p1	3.814	+	AK312362 NM_006366 TSC_hg19_v1_chr6_+_17393918 AL832154 AK295600 AK294215 AK293134 AK297538 AK308461 BC008481	-76919	+	AK055391 NM_153020 BC104808 BC104810 BC040928	-187697	+	NM_001143941	-188407	+	TSC_hg19_v1_chr6_+_17600620 NM_016255 AK296393 AK312814 AF097027 BC047881	129898	+	Z25535 AB384675 AK295644 BC052965 NM_005124 TSC_hg19_v1_chr6_-_17707139 AB210024	236201	-	AJ291578 AJ291579 BC127115 BC127116 AY014403 AY014404 TSC_hg19_v1_chr6_-_17987786	517059	-	AK312362|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##NM_006366|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AL832154|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK295600|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK294215|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK293134|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK297538|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK308461|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##BC008481|CAP2|10486|CAP, adenylate cyclase-associated protein, 2 (yeast)##AK055391|RBM24|221662|RNA binding motif protein 24##NM_153020|RBM24|221662|RNA binding motif protein 24##BC104808|RBM24|221662|RNA binding motif protein 24##BC104810|RBM24|221662|RNA binding motif protein 24##BC040928|RBM24|221662|RNA binding motif protein 24##NM_001143941|RBM24|221662|RNA binding motif protein 24##NM_016255|FAM8A1|51439|family with sequence similarity 8, member A1##AK296393|FAM8A1|51439|family with sequence similarity 8, member A1##AK312814|FAM8A1|51439|family with sequence similarity 8, member A1##AF097027|FAM8A1|51439|family with sequence similarity 8, member A1##BC047881|FAM8A1|51439|family with sequence similarity 8, member A1##Z25535|NUP153|9972|nucleoporin 153kDa##AK295644|NUP153|9972|nucleoporin 153kDa##BC052965|NUP153|9972|nucleoporin 153kDa##NM_005124|NUP153|9972|nucleoporin 153kDa##AB210024|NUP153|9972|nucleoporin 153kDa##AJ291578|KIF13A|63971|kinesin family member 13A##AJ291579|KIF13A|63971|kinesin family member 13A##BC127115|KIF13A|63971|kinesin family member 13A##BC127116|KIF13A|63971|kinesin family member 13A##AY014403|KIF13A|63971|kinesin family member 13A##AY014404|KIF13A|63971|kinesin family member 13A	0.057796	0.0	
chr7	74569845	74569985	reg1012089.p2	3.814	+	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	-61541	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-80223	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-80277	-	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	297605	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	418655	+	AF498998 AF498999 NM_198853 NM_198924 AK309306	455050	+	NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3##AF498998|TRIM73|375593|tripartite motif containing 73##AF498999|TRIM74|378108|tripartite motif containing 74##NM_198853|TRIM74|378108|tripartite motif containing 74##NM_198924|TRIM73|375593|tripartite motif containing 73	0.0	0.0	
chr16	69858541	69858716	reg1019242.p1	3.813	+	TSC_hg19_v1_chr16_+_69796265 BC064531 AJ001982 NM_007014 NM_199423 U96114	-62372	+	TSC_hg19_v1_chr16_+_69796208 AK312792	-62440	+	AF190161 TSC_hg19_v1_chr16_-_69788828 BC064630 CU687926 AK314307 AK001028 AB026125 NM_014062 AY487344	-69805	-	AK126332 NM_199424 TSC_hg19_v1_chr16_+_69958904	100274	+	BC078143 NM_001136214	125997	+	AF521893 NM_182619 BC141808 AF428259 AF448856 AL833339 AK289884 AK298310 AK074773 EU831776 EU831854 CU687316 AK096051	126464	+	BC064531|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AJ001982|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_007014|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_199423|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##U96114|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AK312792|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##AF190161|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##BC064630|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AK314307|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AK001028|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AB026125|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##NM_014062|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AY487344|NOB1|28987|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)##AK126332|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##NM_199424|WWP2|11060|WW domain containing E3 ubiquitin protein ligase 2##BC078143|CLEC18A|348174|C-type lectin domain family 18, member A##NM_001136214|CLEC18A|348174|C-type lectin domain family 18, member A##AF521893|CLEC18A|348174|C-type lectin domain family 18, member A##NM_182619|CLEC18A|348174|C-type lectin domain family 18, member A##BC141808|CLEC18A|348174|C-type lectin domain family 18, member A##AF428259|CLEC18A|348174|C-type lectin domain family 18, member A##AF448856|CLEC18C|283971|C-type lectin domain family 18, member C##AL833339|CLEC18C|283971|C-type lectin domain family 18, member C##AK289884|CLEC18A|348174|C-type lectin domain family 18, member A##AK298310|CLEC18A|348174|C-type lectin domain family 18, member A##AK074773|CLEC18A|348174|C-type lectin domain family 18, member A##EU831776|CLEC18A|348174|C-type lectin domain family 18, member A##EU831854|CLEC18A|348174|C-type lectin domain family 18, member A##AK096051|CLEC18A|348174|C-type lectin domain family 18, member A	0.999544	0.0	
chr2	223654063	223654129	reg1014054.p1	3.813	+	TSC_hg19_v1_chr2_+_223536376 AF384163 NM_058165	-117687	+	TSC_hg19_v1_chr2_-_223520807 AK294158 BC006502 AF042346 CU676064 BC011261 AK001025 BC008434 BC017783 D84430 AK316497 AK291531 AF161521 BC022273 NM_005687	-133302	-	TSC_hg19_v1_chr2_+_223289285 AF542512 BC134342 NM_152386 BC106905 BC114513 BC106904	-364789	+	TSC_hg19_v1_chr2_+_223725753 NM_004457 NM_203372 BC041692 AK314621 AB061712	71651	+	NM_080671 TSC_hg19_v1_chr2_+_223916907 DQ192293 AK313203 BC014429 AY065987	262801	+	M25756 TSC_hg19_v1_chr2_-_224467083 AK298828 AK312452	812970	-	AF384163|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##NM_058165|MOGAT1|116255|monoacylglycerol O-acyltransferase 1##AK294158|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC006502|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF042346|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC011261|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK001025|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC008434|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC017783|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##D84430|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK316497|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AK291531|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF161521|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##BC022273|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##NM_005687|FARSB|10056|phenylalanyl-tRNA synthetase, beta subunit##AF542512|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC134342|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_152386|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106905|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC114513|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##BC106904|SGPP2|130367|sphingosine-1-phosphate phosphatase 2##NM_004457|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_203372|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##BC041692|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AK314621|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##AB061712|ACSL3|2181|acyl-CoA synthetase long-chain family member 3##NM_080671|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##DQ192293|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AK313203|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##BC014429|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##AY065987|KCNE4|23704|potassium voltage-gated channel, Isk-related family, member 4##M25756|SCG2|7857|secretogranin II##AK298828|SCG2|7857|secretogranin II##AK312452|SCG2|7857|secretogranin II	0.5355	0.0	denovo_WM_7:92:0.378
chr5	107537532	107537642	reg1013252.p1	3.813	+	AK308672 NM_001962 U26403	-530997	-	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4639106	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4943130	+	TSC_hg19_v1_chr5_-_107717106 AK126722	179543	-	BC063316 NM_001163315	180211	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	526393	-	AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AB593118|HP07349|100652853|uncharacterized protein HP07349	0.995573	0.0	
chr5	125995564	125995672	reg1018943.p1	3.813	+	BC130495 BC130497 AK131015 NM_207408 HQ258080	-28203	+	AK023255 NM_032177 TSC_hg19_v1_chr5_+_125936641 BC021161 AK024065 AK298497 AK225464 CR457305 DQ893213 DQ896542	-58986	+	TSC_hg19_v1_chr5_-_125930891 AB489160 EU831757 EU831835 S74728 BC073174 BC071712 AK295526 BC002515 AK312459 AK297365 NM_001182 NM_001201377 NM_001202404	-64762	-	NM_005573 BC052951	116697	+	BC103723 TSC_hg19_v1_chr5_+_126112841 AK303084 NM_001198557	117213	+	TSC_hg19_v1_chr5_+_126112878 AK312603 M34458 BC012295 BC078178	117264	+	BC130495|C5orf48|389320|chromosome 5 open reading frame 48##BC130497|C5orf48|389320|chromosome 5 open reading frame 48##AK131015|C5orf48|389320|chromosome 5 open reading frame 48##NM_207408|C5orf48|389320|chromosome 5 open reading frame 48##HQ258080|C5orf48|389320|chromosome 5 open reading frame 48##AK023255|PHAX|51808|phosphorylated adaptor for RNA export##NM_032177|PHAX|51808|phosphorylated adaptor for RNA export##BC021161|PHAX|51808|phosphorylated adaptor for RNA export##AK024065|PHAX|51808|phosphorylated adaptor for RNA export##AK298497|PHAX|51808|phosphorylated adaptor for RNA export##AK225464|PHAX|51808|phosphorylated adaptor for RNA export##CR457305|PHAX|51808|phosphorylated adaptor for RNA export##DQ893213|PHAX|51808|phosphorylated adaptor for RNA export##DQ896542|PHAX|51808|phosphorylated adaptor for RNA export##EU831757|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##EU831835|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##S74728|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC073174|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC071712|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK295526|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##BC002515|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK312459|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##AK297365|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001182|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001201377|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_001202404|ALDH7A1|501|aldehyde dehydrogenase 7 family, member A1##NM_005573|LMNB1|4001|lamin B1##BC052951|LMNB1|4001|lamin B1##BC103723|LMNB1|4001|lamin B1##AK303084|LMNB1|4001|lamin B1##NM_001198557|LMNB1|4001|lamin B1##AK312603|LMNB1|4001|lamin B1##M34458|LMNB1|4001|lamin B1##BC012295|LMNB1|4001|lamin B1##BC078178|LMNB1|4001|lamin B1	0.016096	0.0	
chr10	88152786	88152925	reg1013007.p2	3.812	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	-26592	-	TSC_hg19_v1_chr10_+_86184685 AK294321	-1968160	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-2021237	+	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	128639	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	128675	-	DQ426884 NM_001030015 NM_033282 BC029291 BC113558 BC143688	261539	+	AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_001030015|OPN4|94233|opsin 4##NM_033282|OPN4|94233|opsin 4##BC029291|OPN4|94233|opsin 4##BC113558|OPN4|94233|opsin 4##BC143688|OPN4|94233|opsin 4	0.970399	0.0	denovo_WM_7:5:0.207	denovo_WM_7:11:0.650
chr11	50409553	50409641	reg1018024.p1	3.812	+	BC136850 BC136851 NM_001005270	-405527	-	BC137005 NM_001001955	-435655	+	TSC_hg19_v1_chr11_-_49230053 DQ088979 AF176574 BC025672 AK312366 AK295368 AK295470 AK300532 M99487 NM_001014986 NM_001193471 NM_001193472 NM_001193473 NM_004476 S76978	-1179490	-	BC140750 NM_001005272	1002850	-	NM_001004703	1105684	+	AF521869 BC001862 NM_024114	4620060	+	BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC137005|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##NM_001001955|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##DQ088979|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AF176574|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC025672|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK312366|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295368|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295470|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK300532|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##M99487|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001014986|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193471|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193472|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193473|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_004476|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##S76978|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48	0.0	0.0	
chr11	87836970	87837078	reg1012714.p1	3.812	+	AK024853 TSC_hg19_v1_chr11_+_87032449	-804582	+	TSC_hg19_v1_chr11_+_86749074 NM_001168724 NM_022918 AK296774 BX648678 AK291804 AK000684 BC030952 BC051462 AK302473 CU689044	-1088046	+	BC025750 TSC_hg19_v1_chr11_-_86666438 AB054881 BC114527 BC114622 AB032417 AK292768 NM_012193	-1170636	-	BT009842 DQ894305 DQ891126 AF136172 AF235022 BC015808 NM_022337	71568	-	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	233843	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	233878	-	AK024853|TMEM135|65084|transmembrane protein 135##NM_001168724|TMEM135|65084|transmembrane protein 135##NM_022918|TMEM135|65084|transmembrane protein 135##AK296774|TMEM135|65084|transmembrane protein 135##BX648678|TMEM135|65084|transmembrane protein 135##AK291804|TMEM135|65084|transmembrane protein 135##AK000684|TMEM135|65084|transmembrane protein 135##BC030952|TMEM135|65084|transmembrane protein 135##BC051462|TMEM135|65084|transmembrane protein 135##AK302473|TMEM135|65084|transmembrane protein 135##BC025750|FZD4|8322|frizzled family receptor 4##AB054881|FZD4|8322|frizzled family receptor 4##BC114527|FZD4|8322|frizzled family receptor 4##BC114622|FZD4|8322|frizzled family receptor 4##AB032417|FZD4|8322|frizzled family receptor 4##AK292768|FZD4|8322|frizzled family receptor 4##NM_012193|FZD4|8322|frizzled family receptor 4##BT009842|RAB38|23682|RAB38, member RAS oncogene family##DQ894305|RAB38|23682|RAB38, member RAS oncogene family##DQ891126|RAB38|23682|RAB38, member RAS oncogene family##AF136172|RAB38|23682|RAB38, member RAS oncogene family##AF235022|RAB38|23682|RAB38, member RAS oncogene family##BC015808|RAB38|23682|RAB38, member RAS oncogene family##NM_022337|RAB38|23682|RAB38, member RAS oncogene family##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C	0.0	0.862697	CTCF.p2:-48:0.663
chr12	81201787	81201935	reg1012254.p1	3.812	+	TSC_hg19_v1_chr12_+_81110690 NM_005593 BC069373 X14894 AB528948 BT019399	-91096	+	NM_002469 AK313287 X52011 BC017834 AB587443 CU676084 DQ893248 DQ896577 CR407641 CR541763	-100409	+	NM_001145026	-363736	+	TSC_hg19_v1_chr12_-_81331470 AK309256	129606	-	TSC_hg19_v1_chr12_-_81331487 AB528898 CR407680 BC099921 AK315321 BC046926 BC062332 BC118609 BC122561 AF087693 AF173081 NM_004664	129729	-	TSC_hg19_v1_chr12_+_81471857 BC009317 BC015769 NM_024560 AK025616 AX764482	269997	+	NM_005593|MYF5|4617|myogenic factor 5##BC069373|MYF5|4617|myogenic factor 5##X14894|MYF5|4617|myogenic factor 5##BT019399|MYF5|4617|myogenic factor 5##NM_002469|MYF6|4618|myogenic factor 6 (herculin)##AK313287|MYF6|4618|myogenic factor 6 (herculin)##X52011|MYF6|4618|myogenic factor 6 (herculin)##BC017834|MYF6|4618|myogenic factor 6 (herculin)##DQ893248|MYF6|4618|myogenic factor 6 (herculin)##DQ896577|MYF6|4618|myogenic factor 6 (herculin)##CR407641|MYF6|4618|myogenic factor 6 (herculin)##CR541763|MYF6|4618|myogenic factor 6 (herculin)##NM_001145026|PTPRQ|374462|protein tyrosine phosphatase, receptor type, Q##AK309256|LIN7A|8825|lin-7 homolog A (C. elegans)##CR407680|LIN7A|8825|lin-7 homolog A (C. elegans)##BC099921|LIN7A|8825|lin-7 homolog A (C. elegans)##AK315321|LIN7A|8825|lin-7 homolog A (C. elegans)##BC046926|LIN7A|8825|lin-7 homolog A (C. elegans)##BC062332|LIN7A|8825|lin-7 homolog A (C. elegans)##BC118609|LIN7A|8825|lin-7 homolog A (C. elegans)##BC122561|LIN7A|8825|lin-7 homolog A (C. elegans)##AF087693|LIN7A|8825|lin-7 homolog A (C. elegans)##AF173081|LIN7A|8825|lin-7 homolog A (C. elegans)##NM_004664|LIN7A|8825|lin-7 homolog A (C. elegans)##BC009317|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##BC015769|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##NM_024560|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AK025616|ACSS3|79611|acyl-CoA synthetase short-chain family member 3##AX764482|ACSS3|79611|acyl-CoA synthetase short-chain family member 3	0.0	0.0	
chr13	62880114	62880278	reg1015634.p2	3.812	+	AK289924 NM_022843	-890542	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	-890943	-	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-1908717	+	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	4924308	-	AF252283 TSC_hg19_v1_chr13_-_70682585 AB040923 AK291435 NM_020866	7802345	-	TSC_hg19_v1_chr13_-_72440143 AK001000 BC021219 AF069509	9560063	-	AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9##AF252283|KLHL1|57626|kelch-like 1 (Drosophila)##AB040923|KLHL1|57626|kelch-like 1 (Drosophila)##AK291435|KLHL1|57626|kelch-like 1 (Drosophila)##NM_020866|KLHL1|57626|kelch-like 1 (Drosophila)##AK001000|DACH1|1602|dachshund homolog 1 (Drosophila)##BC021219|DACH1|1602|dachshund homolog 1 (Drosophila)##AF069509|DACH1|1602|dachshund homolog 1 (Drosophila)	0.988572	0.0	denovo_WM_7:77:0.796
chr14	64876360	64876497	reg1015551.p1	3.812	+	TSC_hg19_v1_chr14_+_64855070 AK095514 AK312361 BC050420 AK309266 BC009806 J04031 AB384767 DQ893634 DQ896853	-21332	+	AK302747 NM_005956	-21675	+	NM_001040276 BX247957 TSC_hg19_v1_chr14_-_64805347	-71070	-	AK315336 NM_004857 BC057229	55832	+	TSC_hg19_v1_chr14_-_64970524 NM_006977 BC035804	94015	-	TSC_hg19_v1_chr14_+_64971227 BX248777 NM_001123329 NM_014950	94830	+	AK312361|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC050420|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK309266|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##BC009806|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##J04031|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ893634|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##DQ896853|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##AK302747|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_005956|MTHFD1|4522|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase##NM_001040276|ESR2|2100|estrogen receptor 2 (ER beta)##BX247957|ESR2|2100|estrogen receptor 2 (ER beta)##AK315336|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_004857|AKAP5|9495|A kinase (PRKA) anchor protein 5##BC057229|AKAP5|9495|A kinase (PRKA) anchor protein 5##NM_006977|ZBTB25|7597|zinc finger and BTB domain containing 25##BC035804|ZBTB25|7597|zinc finger and BTB domain containing 25##BX248777|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_001123329|ZBTB1|22890|zinc finger and BTB domain containing 1##NM_014950|ZBTB1|22890|zinc finger and BTB domain containing 1	0.0	0.0	
chr17	4277429	4277609	reg1010938.p2	3.812	+	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	-7611	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	-7808	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	-110368	-	AK172832 NM_182538 TSC_hg19_v1_chr17_+_4337247 BC023646	59723	+	NM_001124758 BC041772 TSC_hg19_v1_chr17_+_4402177 AB441165	124717	+	EU832503 BC050546 TSC_hg19_v1_chr17_-_4458680 AF147709 AK303150 AK301622 AK307948 NM_001105538 NM_014520	181155	-	AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK172832|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_182538|SPNS3|201305|spinster homolog 3 (Drosophila)##BC023646|SPNS3|201305|spinster homolog 3 (Drosophila)##NM_001124758|SPNS2|124976|spinster homolog 2 (Drosophila)##BC041772|SPNS2|124976|spinster homolog 2 (Drosophila)##AB441165|SPNS2|124976|spinster homolog 2 (Drosophila)##EU832503|MYBBP1A|10514|MYB binding protein (P160) 1a##BC050546|MYBBP1A|10514|MYB binding protein (P160) 1a##AF147709|MYBBP1A|10514|MYB binding protein (P160) 1a##AK303150|MYBBP1A|10514|MYB binding protein (P160) 1a##AK301622|MYBBP1A|10514|MYB binding protein (P160) 1a##AK307948|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_001105538|MYBBP1A|10514|MYB binding protein (P160) 1a##NM_014520|MYBBP1A|10514|MYB binding protein (P160) 1a	0.992973	0.0	denovo_WM_7:-17:0.314	denovo_WM_7:-18:0.314	denovo_WM_7:-19:0.314
chr17	64242533	64242639	reg1013912.p1	3.812	+	AB527858 CU693198 TSC_hg19_v1_chr17_-_64225518 DQ891362 DQ894542 S80305 AF082883 AK313838 BC020703 X58100 AK298416 BC026283 X53595 X57847 M62839 NM_000042	-17061	-	BC131805 TSC_hg19_v1_chr17_-_64188195 BC037991 NM_145036 AK299075 AK096929 NM_001199165	-54405	-	BC029524 NM_001037325	-419926	-	TSC_hg19_v1_chr17_+_64298733 BC053321	56164	+	TSC_hg19_v1_chr17_+_64298844 NM_002737 X52479 BC109273 BC109274 AY633609 EU832768 GQ129311 AB527684 AB451258 AB451383 AB209475 M22199	56341	+	AK290171 TSC_hg19_v1_chr17_+_64831234	588649	+	DQ891362|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##DQ894542|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##S80305|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK313838|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC020703|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X58100|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##AK298416|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC026283|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X53595|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##X57847|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##M62839|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##NM_000042|APOH|350|apolipoprotein H (beta-2-glycoprotein I)##BC131805|CEP112|201134|centrosomal protein 112kDa##BC037991|CEP112|201134|centrosomal protein 112kDa##NM_145036|CEP112|201134|centrosomal protein 112kDa##AK299075|CEP112|201134|centrosomal protein 112kDa##AK096929|CEP112|201134|centrosomal protein 112kDa##NM_001199165|CEP112|201134|centrosomal protein 112kDa##BC029524|CEP112|201134|centrosomal protein 112kDa##NM_001037325|CEP112|201134|centrosomal protein 112kDa##BC053321|PRKCA|5578|protein kinase C, alpha##NM_002737|PRKCA|5578|protein kinase C, alpha##X52479|PRKCA|5578|protein kinase C, alpha##BC109273|PRKCA|5578|protein kinase C, alpha##BC109274|PRKCA|5578|protein kinase C, alpha##AY633609|PRKCA|5578|protein kinase C, alpha##EU832768|PRKCA|5578|protein kinase C, alpha##GQ129311|PRKCA|5578|protein kinase C, alpha##AB451258|PRKCA|5578|protein kinase C, alpha##AB451383|PRKCA|5578|protein kinase C, alpha##AB209475|PRKCA|5578|protein kinase C, alpha##M22199|PRKCA|5578|protein kinase C, alpha##AK290171|CACNG5|27091|calcium channel, voltage-dependent, gamma subunit 5	0.998858	0.0	denovo_WM_7:-52:0.314	denovo_WM_7:-53:0.314	denovo_WM_7:-54:0.314
chr19	41903337	41903517	reg1015643.p2	3.812	+	TSC_hg19_v1_chr19_-_41903262 AB463622 BC007742 AK314941 AF281134 NM_020158 BC107696 AF285785	-128	-	NM_001042595 BC063705	-20245	+	NM_001098821 NM_001098822 NM_001098823 NM_001098824	-20990	+	NM_000709 NM_001164783 TSC_hg19_v1_chr19_+_41903714	277	+	TSC_hg19_v1_chr19_+_41903722 AL833143 BC023983 Z14093	293	+	TSC_hg19_v1_chr19_+_41903725 AK313300 AK298188 BC007878 BC008933 AB209828 J04474	305	+	BC007742|EXOSC5|56915|exosome component 5##AK314941|EXOSC5|56915|exosome component 5##AF281134|EXOSC5|56915|exosome component 5##NM_020158|EXOSC5|56915|exosome component 5##BC107696|EXOSC5|56915|exosome component 5##AF285785|EXOSC5|56915|exosome component 5##NM_001042595|TMEM91|641649|transmembrane protein 91##BC063705|TMEM91|641649|transmembrane protein 91##NM_001098821|TMEM91|641649|transmembrane protein 91##NM_001098822|TMEM91|641649|transmembrane protein 91##NM_001098823|TMEM91|641649|transmembrane protein 91##NM_001098824|TMEM91|641649|transmembrane protein 91##NM_000709|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##NM_001164783|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AL833143|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC023983|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##Z14093|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AK313300|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AK298188|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC007878|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##BC008933|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##AB209828|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide##J04474|BCKDHA|593|branched chain keto acid dehydrogenase E1, alpha polypeptide	0.0	0.0	
chr20	57558102	57558209	reg1014997.p1	3.812	+	TSC_hg19_v1_chr20_+_57556329 BC014952 BX647417 AJ238379 AF161479 AB528731 AK023927 AK023310 AK001316	-1806	+	TSC_hg19_v1_chr20_+_57556319 AK293410 AK304310 NM_198976	-1848	+	TSC_hg19_v1_chr20_+_57470682 M77026	-87491	+	AF009923 BT019915 CU692072 AM392668 AB528116 AF073890 AF136273 BC025419 BC042168 TSC_hg19_v1_chr20_-_57582302	24072	-	TSC_hg19_v1_chr20_-_57582305 AK314931 NM_001336	24150	-	AJ292757 NM_030773	36153	+	BC014952|TH1L|51497|TH1-like (Drosophila)##BX647417|TH1L|51497|TH1-like (Drosophila)##AJ238379|TH1L|51497|TH1-like (Drosophila)##AF161479|TH1L|51497|TH1-like (Drosophila)##AK023927|TH1L|51497|TH1-like (Drosophila)##AK023310|TH1L|51497|TH1-like (Drosophila)##AK001316|TH1L|51497|TH1-like (Drosophila)##AK293410|TH1L|51497|TH1-like (Drosophila)##AK304310|TH1L|51497|TH1-like (Drosophila)##NM_198976|TH1L|51497|TH1-like (Drosophila)##M77026|GNAS|2778|GNAS complex locus##AF009923|CTSZ|1522|cathepsin Z##BT019915|CTSZ|1522|cathepsin Z##AM392668|CTSZ|1522|cathepsin Z##AF073890|CTSZ|1522|cathepsin Z##AF136273|CTSZ|1522|cathepsin Z##BC025419|CTSZ|1522|cathepsin Z##BC042168|CTSZ|1522|cathepsin Z##AK314931|CTSZ|1522|cathepsin Z##NM_001336|CTSZ|1522|cathepsin Z##AJ292757|TUBB1|81027|tubulin, beta 1 class VI##NM_030773|TUBB1|81027|tubulin, beta 1 class VI	0.98635	0.0	denovo_WM_7:46:0.773
chr2	192403977	192404082	reg1015442.p1	3.812	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-293931	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-387722	-	TSC_hg19_v1_chr2_-_192015965 NM_003151	-388070	-	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	138833	+	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	307709	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	307942	-	NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##NM_003151|STAT4|6775|signal transducer and activator of transcription 4##NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response	1.953241	0.990633	denovo_WM_7:0:0.358	denovo_WM_7:1:0.267	denovo_WM_7:21:0.716	CTCF.p2:-37:0.991
chr2	85058310	85058417	reg1018029.p1	3.812	+	TSC_hg19_v1_chr2_+_84743576 AK094676 NM_001370	-314786	+	NM_003849	-371778	-	AK296741 TSC_hg19_v1_chr2_-_84686396	-371968	-	TSC_hg19_v1_chr2_-_85108209 AK296608 AK309615	49844	-	TSC_hg19_v1_chr2_-_85108241 NM_001080824 BC051789	49940	-	NM_021103 AK130949 D28363 TSC_hg19_v1_chr2_+_85132779 AK311952 BC016731 BC107889 S54005 BC016025 M20259 AY453400	74432	+	AK094676|DNAH6|1768|dynein, axonemal, heavy chain 6##NM_001370|DNAH6|1768|dynein, axonemal, heavy chain 6##NM_003849|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296741|SUCLG1|8802|succinate-CoA ligase, alpha subunit##AK296608|C2orf89|129293|chromosome 2 open reading frame 89##AK309615|C2orf89|129293|chromosome 2 open reading frame 89##NM_001080824|C2orf89|129293|chromosome 2 open reading frame 89##BC051789|C2orf89|129293|chromosome 2 open reading frame 89##NM_021103|TMSB10|9168|thymosin beta 10##AK130949|TMSB10|9168|thymosin beta 10##AK311952|TMSB10|9168|thymosin beta 10##BC016731|TMSB10|9168|thymosin beta 10##BC107889|TMSB10|9168|thymosin beta 10##S54005|TMSB10|9168|thymosin beta 10##BC016025|TMSB10|9168|thymosin beta 10##M20259|TMSB10|9168|thymosin beta 10##AY453400|TMSB10|9168|thymosin beta 10	0.355403	0.0	denovo_WM_7:-41:0.355
chr6	106140719	106140899	reg1012227.p2	3.812	+	AK314195 TSC_hg19_v1_chr6_-_105850978 NM_002726	-289814	-	BC030636 TSC_hg19_v1_chr6_-_105850958	-289851	-	AB020018 AY660966 D21102 X74496 AB028867 DQ893427 DQ896742 TSC_hg19_v1_chr6_-_105850927	-289963	-	TSC_hg19_v1_chr6_+_106534188 AF084199 AY198414 NM_001198	393387	+	TSC_hg19_v1_chr6_+_106534247 AK289556 AL832963	393426	+	AK301341 NM_182907 AY198415 BC103832 BC103833 BC103834 BC103835 EF151143	405995	+	AK314195|PREP|5550|prolyl endopeptidase##NM_002726|PREP|5550|prolyl endopeptidase##BC030636|PREP|5550|prolyl endopeptidase##AB020018|PREP|5550|prolyl endopeptidase##AY660966|PREP|5550|prolyl endopeptidase##D21102|PREP|5550|prolyl endopeptidase##X74496|PREP|5550|prolyl endopeptidase##AB028867|PREP|5550|prolyl endopeptidase##DQ893427|PREP|5550|prolyl endopeptidase##DQ896742|PREP|5550|prolyl endopeptidase##AF084199|PRDM1|639|PR domain containing 1, with ZNF domain##AY198414|PRDM1|639|PR domain containing 1, with ZNF domain##NM_001198|PRDM1|639|PR domain containing 1, with ZNF domain##AK289556|PRDM1|639|PR domain containing 1, with ZNF domain##AL832963|PRDM1|639|PR domain containing 1, with ZNF domain##AK301341|PRDM1|639|PR domain containing 1, with ZNF domain##NM_182907|PRDM1|639|PR domain containing 1, with ZNF domain##AY198415|PRDM1|639|PR domain containing 1, with ZNF domain##BC103832|PRDM1|639|PR domain containing 1, with ZNF domain##BC103833|PRDM1|639|PR domain containing 1, with ZNF domain##BC103834|PRDM1|639|PR domain containing 1, with ZNF domain##BC103835|PRDM1|639|PR domain containing 1, with ZNF domain##EF151143|PRDM1|639|PR domain containing 1, with ZNF domain	0.079973	0.0	
chr7	135678856	135678977	reg1012150.p1	3.812	+	BC013989 TSC_hg19_v1_chr7_-_135662202 NM_001128619 NM_145808	-16714	-	TSC_hg19_v1_chr7_-_135662107 AF106075 AL834231 BC028093 AK309816 AK056225	-16826	-	AB489167 AM393216 AM393266 TSC_hg19_v1_chr7_-_135661945	-17020	-	AY034603 AY219704 NM_001006627 NM_001006630 AK290236 AL832585	874490	+	AK125233 AY034604 AY456125 AY456126 AY456127 NM_000739 NM_001006631 NM_001006632 AY219705 NM_001006626 AY219703 NM_001006629 AY034605 NM_001006628 TSC_hg19_v1_chr7_+_136554002	875001	+	TSC_hg19_v1_chr7_-_137028305 D90226	1349387	-	NM_001128619|LUZP6|767558|leucine zipper protein 6##NM_145808|MTPN|136319|myotrophin##AF106075|MTPN|136319|myotrophin##AL834231|MTPN|136319|myotrophin##BC028093|MTPN|136319|myotrophin##AK309816|MTPN|136319|myotrophin##AK056225|MTPN|136319|myotrophin##AM393216|MTPN|136319|myotrophin##AM393266|MTPN|136319|myotrophin##AY034603|CHRM2|1129|cholinergic receptor, muscarinic 2##AY219704|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006627|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006630|CHRM2|1129|cholinergic receptor, muscarinic 2##AK290236|CHRM2|1129|cholinergic receptor, muscarinic 2##AL832585|CHRM2|1129|cholinergic receptor, muscarinic 2##AK125233|CHRM2|1129|cholinergic receptor, muscarinic 2##AY034604|CHRM2|1129|cholinergic receptor, muscarinic 2##AY456125|CHRM2|1129|cholinergic receptor, muscarinic 2##AY456126|CHRM2|1129|cholinergic receptor, muscarinic 2##AY456127|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_000739|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006631|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006632|CHRM2|1129|cholinergic receptor, muscarinic 2##AY219705|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006626|CHRM2|1129|cholinergic receptor, muscarinic 2##AY219703|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006629|CHRM2|1129|cholinergic receptor, muscarinic 2##AY034605|CHRM2|1129|cholinergic receptor, muscarinic 2##NM_001006628|CHRM2|1129|cholinergic receptor, muscarinic 2##D90226|PTN|5764|pleiotrophin	1.731705	0.0	denovo_WM_7:56:0.377	denovo_WM_7:58:0.293	denovo_WM_7:-72:0.221	denovo_WM_7:-73:0.514
chr8	41386464	41386530	reg1010844.p2	3.812	+	AF068291 TSC_hg19_v1_chr8_+_41348140 BC012032 NM_001002296	-38348	+	TSC_hg19_v1_chr8_+_41348114 AB104615 BC001227 AF125102	-38385	+	TSC_hg19_v1_chr8_+_41348100 AK026613	-38398	+	NM_032336 AK299207 BC027454 TSC_hg19_v1_chr8_+_41386745 BC005995	240	+	TSC_hg19_v1_chr8_+_41386779 AK095334 AK313373	275	+	TSC_hg19_v1_chr8_+_41435710 NM_178819 AF406612	49197	+	AF068291|GOLGA7|51125|golgin A7##BC012032|GOLGA7|51125|golgin A7##NM_001002296|GOLGA7|51125|golgin A7##AB104615|GOLGA7|51125|golgin A7##BC001227|GOLGA7|51125|golgin A7##AF125102|GOLGA7|51125|golgin A7##AK026613|GOLGA7|51125|golgin A7##NM_032336|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK299207|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC027454|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##BC005995|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK095334|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##AK313373|GINS4|84296|GINS complex subunit 4 (Sld5 homolog)##NM_178819|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)##AF406612|AGPAT6|137964|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	0.0	0.013107	
chrY	1563399	1563503	reg1017228.p2	3.812	+	AK301844 NM_001173473	-40800	-	CU678006 BC010089 BC002508 AK001090 AK297805 AK225770 AK299231 AK090498 NM_001173474 NM_004192	-41650	-	CR457400 DQ891478 DQ894667 BC031912 BC007295 BC008737 BC008935 AY007135 BC007850 BC013256 BC035469 AB209822 BC014775 AK312336 NM_001636	-102482	-	BC043610 GQ280263 NM_178129 AK126147	42587	-	BC016935 NM_005088 BC110496 BC110497 AK308367 M99578 L03426 BC028151 BC015800	97078	+	NM_004043 U11090	100896	+	AK301844|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173473|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC010089|ASMTL|8623|acetylserotonin O-methyltransferase-like##BC002508|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK001090|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK297805|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK225770|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK299231|ASMTL|8623|acetylserotonin O-methyltransferase-like##AK090498|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_001173474|ASMTL|8623|acetylserotonin O-methyltransferase-like##NM_004192|ASMTL|8623|acetylserotonin O-methyltransferase-like##CR457400|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ891478|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##DQ894667|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC031912|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007295|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008737|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC008935|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AY007135|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC007850|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC013256|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC035469|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AB209822|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC014775|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##AK312336|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##NM_001636|SLC25A6|293|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6##BC043610|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##GQ280263|CRLF2|64109|cytokine receptor-like factor 2##NM_178129|P2RY8|286530|purinergic receptor P2Y, G-protein coupled, 8##BC016935|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_005088|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110496|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC110497|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##AK308367|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##M99578|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##L03426|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC028151|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##BC015800|AKAP17A|8227|A kinase (PRKA) anchor protein 17A##NM_004043|ASMT|438|acetylserotonin O-methyltransferase##U11090|ASMT|438|acetylserotonin O-methyltransferase	0.907033	0.0	denovo_WM_7:-15:0.448	denovo_WM_7:-16:0.390
chr10	6244723	6244789	reg1014916.p1	3.811	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-57844	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-57872	+	AK302518 TSC_hg19_v1_chr10_+_6186860 NM_001145443	-57940	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	120	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	377505	-	TSC_hg19_v1_chr10_+_6622460 AY007155	377724	+	AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##NM_001145443|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949	0.0	0.139663	
chr1	110648805	110648903	reg1010766.p1	3.811	+	AF008203 BC112007 BC113428 NM_006492	-35577	-	AK291059 TSC_hg19_v1_chr1_+_110577249 AL834196 AB051548 AB463038	-71601	+	BC094786 TSC_hg19_v1_chr1_+_110577243	-71612	+	AK098556 NM_203412 BC058929	6221	+	NM_001010898 AK289982 TSC_hg19_v1_chr1_+_110693135	44280	+	TSC_hg19_v1_chr1_+_110753347 NM_001039574 NM_004978	104490	+	AF008203|ALX3|257|ALX homeobox 3##BC112007|ALX3|257|ALX homeobox 3##BC113428|ALX3|257|ALX homeobox 3##NM_006492|ALX3|257|ALX homeobox 3##AK291059|FAM40A|85369|family with sequence similarity 40, member A##AL834196|FAM40A|85369|family with sequence similarity 40, member A##AB051548|FAM40A|85369|family with sequence similarity 40, member A##BC094786|FAM40A|85369|family with sequence similarity 40, member A##AK098556|UBL4B|164153|ubiquitin-like 4B##NM_203412|UBL4B|164153|ubiquitin-like 4B##BC058929|UBL4B|164153|ubiquitin-like 4B##NM_001010898|SLC6A17|388662|solute carrier family 6, member 17##AK289982|SLC6A17|388662|solute carrier family 6, member 17##NM_001039574|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4##NM_004978|KCNC4|3749|potassium voltage-gated channel, Shaw-related subfamily, member 4	0.0	0.93841	CTCF.p2:74:0.938
chr13	47167568	47167662	reg1016328.p2	3.811	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-40108	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-40195	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-40292	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	203700	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	303452	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1407836	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	0.0	0.0	
chr15	94867582	94867676	reg1019884.p2	3.811	+	NM_001159643 NM_018349 AY656717 BC131527	-26168	+	TSC_hg19_v1_chr15_+_94774789 AK300325 AL832717 AL832048 AK090622 AX746539 BC041387	-92771	+	AB463222 AM392685 BC146682 AK074980 BC140838 BC151132 AL136826 TSC_hg19_v1_chr15_-_93632430 AK074910 AK291365 NM_020211	-1235276	-	NM_001159644 BC025708 BC111024 AK002037	31680	+	TSC_hg19_v1_chr15_-_95870310 BC040875	1002690	-	BC106083 NM_001145155 FM208183	2001532	+	NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##AK300325|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832717|MCTP2|55784|multiple C2 domains, transmembrane 2##AL832048|MCTP2|55784|multiple C2 domains, transmembrane 2##AK090622|MCTP2|55784|multiple C2 domains, transmembrane 2##BC041387|MCTP2|55784|multiple C2 domains, transmembrane 2##AM392685|RGMA|56963|RGM domain family, member A##BC146682|RGMA|56963|RGM domain family, member A##AK074980|RGMA|56963|RGM domain family, member A##BC140838|RGMA|56963|RGM domain family, member A##BC151132|RGMA|56963|RGM domain family, member A##AL136826|RGMA|56963|RGM domain family, member A##AK074910|RGMA|56963|RGM domain family, member A##NM_020211|RGMA|56963|RGM domain family, member A##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##BC040875|LOC400456|400456|uncharacterized LOC400456##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.146173	0.999321	CTCF.p2:9:0.999
chr17	3616201	3616354	reg1014718.p1	3.811	+	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	-16685	-	BC006220 BC028084 TSC_hg19_v1_chr17_-_3599406 BC039015	-16873	-	DQ234349 CU691640 AB528606 TSC_hg19_v1_chr17_-_3599311 AF070573 AF016709 U49395 U49396	-16965	-	TSC_hg19_v1_chr17_-_3627077 AF289864	10825	-	TSC_hg19_v1_chr17_+_3627210 AK310546 AK315247 BC036181 NM_031965 AK056691 AB039834 AF289865 BC050662 AK292715 BC016626 BC047457	10939	+	HQ258689 TSC_hg19_v1_chr17_-_3704463	88176	-	AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC006220|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC028084|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC039015|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##DQ234349|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF070573|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF016709|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49395|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49396|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF289864|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)##BC036181|GSG2|83903|germ cell associated 2 (haspin)##NM_031965|GSG2|83903|germ cell associated 2 (haspin)##AK056691|GSG2|83903|germ cell associated 2 (haspin)##AB039834|GSG2|83903|germ cell associated 2 (haspin)##AF289865|GSG2|83903|germ cell associated 2 (haspin)##BC050662|GSG2|83903|germ cell associated 2 (haspin)##AK292715|GSG2|83903|germ cell associated 2 (haspin)##BC016626|GSG2|83903|germ cell associated 2 (haspin)##BC047457|GSG2|83903|germ cell associated 2 (haspin)##HQ258689|ITGAE|3682|integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)	0.044926	0.0	
chr2	192366409	192366510	reg1014257.p2	3.811	+	TSC_hg19_v1_chr2_+_192110129 NM_001130158 NM_012223 BC060849 BC053558 NM_001161819	-256361	+	BC031212 EU304789 EU304792 EU304793 NM_001243835	-350152	-	TSC_hg19_v1_chr2_-_192015965 NM_003151	-350500	-	NM_001031716 AK026486 AL832659 BC107723 TSC_hg19_v1_chr2_+_192542861	176403	+	CU677635 DQ891440 DQ894617 AB590258 TSC_hg19_v1_chr2_-_192711811 BC016475 AF085481 AK311055 AK026943	345279	-	TSC_hg19_v1_chr2_-_192711934 AK290378 NM_004657	345512	-	NM_001130158|MYO1B|4430|myosin IB##NM_012223|MYO1B|4430|myosin IB##BC060849|MYO1B|4430|myosin IB##BC053558|MYO1B|4430|myosin IB##NM_001161819|MYO1B|4430|myosin IB##BC031212|STAT4|6775|signal transducer and activator of transcription 4##EU304789|STAT4|6775|signal transducer and activator of transcription 4##EU304792|STAT4|6775|signal transducer and activator of transcription 4##EU304793|STAT4|6775|signal transducer and activator of transcription 4##NM_001243835|STAT4|6775|signal transducer and activator of transcription 4##NM_003151|STAT4|6775|signal transducer and activator of transcription 4##NM_001031716|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AK026486|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##AL832659|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##BC107723|OBFC2A|64859|oligonucleotide/oligosaccharide-binding fold containing 2A##DQ891440|SDPR|8436|serum deprivation response##DQ894617|SDPR|8436|serum deprivation response##BC016475|SDPR|8436|serum deprivation response##AF085481|SDPR|8436|serum deprivation response##AK026943|SDPR|8436|serum deprivation response##AK290378|SDPR|8436|serum deprivation response##NM_004657|SDPR|8436|serum deprivation response	0.992166	0.222888	CTCF.p2:19:0.223	denovo_WM_7:-22:0.831
chr4	170104837	170104971	reg1016140.p1	3.811	+	BC041023 TSC_hg19_v1_chr4_-_170077830	-27085	-	BC021973 BC033650 TSC_hg19_v1_chr4_-_169931407 AK027337 AK291756 AK299847 AL833393 NM_032783	-173446	-	TSC_hg19_v1_chr4_+_169753245 NM_001166110 AB023209	-351727	+	TSC_hg19_v1_chr4_-_170192099 BC053671	87143	-	AK021429 TSC_hg19_v1_chr4_-_170192108	87203	-	TSC_hg19_v1_chr4_-_170192202 NM_020870	87316	-	BC041023|SH3RF1|57630|SH3 domain containing ring finger 1##BC021973|CBR4|84869|carbonyl reductase 4##BC033650|CBR4|84869|carbonyl reductase 4##AK027337|CBR4|84869|carbonyl reductase 4##AK291756|CBR4|84869|carbonyl reductase 4##AL833393|CBR4|84869|carbonyl reductase 4##NM_032783|CBR4|84869|carbonyl reductase 4##NM_001166110|PALLD|23022|palladin, cytoskeletal associated protein##AB023209|PALLD|23022|palladin, cytoskeletal associated protein##BC053671|SH3RF1|57630|SH3 domain containing ring finger 1##AK021429|SH3RF1|57630|SH3 domain containing ring finger 1##NM_020870|SH3RF1|57630|SH3 domain containing ring finger 1	1.044378	0.0	denovo_WM_7:5:0.332	denovo_WM_7:6:0.514
chr6	27638388	27638534	reg1014891.p1	3.811	+	TSC_hg19_v1_chr6_-_27440879 BC022992 AK123011 AK312804 NM_007149	-197760	-	TSC_hg19_v1_chr6_+_27356537 NM_001076781 AK092633 AK294965 AX747641 BC132797	-281906	+	AF352327 AF336874 BC107050 NM_032030	-345903	+	EU446971 TSC_hg19_v1_chr6_-_27775708 NM_003519 AK312114 BC093759 BC093761	137262	-	BC112254 BC112256 TSC_hg19_v1_chr6_+_27775950 AK311766 BC062305 NM_003509 HQ258047	137480	+	BC007518 TSC_hg19_v1_chr6_+_27777828 AK311991 NM_003536 EU446975 BC096128 BC096129 BC096130 BC143046 BC148243 BC148250	139321	+	BC022992|ZNF184|7738|zinc finger protein 184##AK123011|ZNF184|7738|zinc finger protein 184##AK312804|ZNF184|7738|zinc finger protein 184##NM_007149|ZNF184|7738|zinc finger protein 184##NM_001076781|ZNF391|346157|zinc finger protein 391##AK092633|ZNF391|346157|zinc finger protein 391##AK294965|ZNF391|346157|zinc finger protein 391##BC132797|ZNF391|346157|zinc finger protein 391##AF352327|FKSG83|83954|FKSG83##AF336874|FKSG83|83954|FKSG83##BC107050|FKSG83|83954|FKSG83##NM_032030|FKSG83|83954|FKSG83##EU446971|HIST1H2BL|8340|histone cluster 1, H2bl##NM_003519|HIST1H2BL|8340|histone cluster 1, H2bl##AK312114|HIST1H2BL|8340|histone cluster 1, H2bl##BC093759|HIST1H2BL|8340|histone cluster 1, H2bl##BC093761|HIST1H2BL|8340|histone cluster 1, H2bl##BC112254|HIST1H2AI|8329|histone cluster 1, H2ai##BC112256|HIST1H2AI|8329|histone cluster 1, H2ai##AK311766|HIST1H2AI|8329|histone cluster 1, H2ai##BC062305|HIST1H3F|8968|histone cluster 1, H3f##NM_003509|HIST1H2AI|8329|histone cluster 1, H2ai##HQ258047|HIST1H2AM|8336|histone cluster 1, H2am##BC007518|HIST1H3H|8357|histone cluster 1, H3h##AK311991|HIST1H3H|8357|histone cluster 1, H3h##NM_003536|HIST1H3H|8357|histone cluster 1, H3h##EU446975|HIST1H3H|8357|histone cluster 1, H3h##BC096128|HIST1H3H|8357|histone cluster 1, H3h##BC096129|HIST1H3H|8357|histone cluster 1, H3h##BC096130|HIST1H3H|8357|histone cluster 1, H3h##BC143046|HIST1H3H|8357|histone cluster 1, H3h##BC148243|HIST1H3H|8357|histone cluster 1, H3h##BC148250|HIST1H3H|8357|histone cluster 1, H3h	0.328302	0.0	denovo_WM_7:27:0.289
chr9	109547705	109547771	reg1013808.p1	3.811	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-1090820	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-1090885	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-1122981	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	77626	+	TSC_hg19_v1_chr9_+_109686439 CR749850	138731	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	497794	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	0.0	0.0	
chr9	126901299	126901416	reg1012823.p1	3.811	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-127286	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-127474	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-209046	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	118653	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	118888	+	TSC_hg19_v1_chr9_+_127020255 AB026289	118907	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.967699	0.0	denovo_WM_7:-89:0.210	denovo_WM_7:-92:0.443	denovo_WM_7:-94:0.231
chr9	132655795	132655938	reg1014010.p1	3.811	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-58101	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-58144	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-58182	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	149488	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	149622	-	BC039728 NM_001136557 NM_001136558 NM_020960	160118	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.999688	0.0	
chr1	210502467	210502578	reg1017158.p1	3.810	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-257	+	NM_001122834 NM_001170564 AK297193	-926	+	BC012083 NM_019605 AK096381	-96311	+	NM_001170580 BC051191	119	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	804863	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	930186	+	NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##BC012083|SERTAD4|56256|SERTA domain containing 4##NM_019605|SERTAD4|56256|SERTA domain containing 4##AK096381|SERTAD4|56256|SERTA domain containing 4##NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3	0.0	0.0	
chr13	24541245	24541425	reg1008714.p2	3.810	+	NM_001007537 CU691876 BC137004 BC137006 BC144450	-70177	-	NM_001135816 BC142999	-77743	+	TSC_hg19_v1_chr13_-_24463540 DQ893610 DQ896839 AK291923 U80034 AK225290 AK308908 BC009934 NM_005932	-77821	-	BX648445 TSC_hg19_v1_chr13_+_24553892	12530	+	TSC_hg19_v1_chr13_+_24553943 BX648244 BC043582	12598	+	TSC_hg19_v1_chr13_+_24734858 AK092754 AX747708 NM_001166271 NM_153023 AK055770	193560	+	NM_001007537|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137004|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC137006|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##BC144450|C1QTNF9B|387911|C1q and tumor necrosis factor related protein 9B##NM_001135816|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##BC142999|C1QTNF9B-AS1|542767|C1QTNF9B antisense RNA 1 (non-protein coding)##DQ893610|MIPEP|4285|mitochondrial intermediate peptidase##DQ896839|MIPEP|4285|mitochondrial intermediate peptidase##AK291923|MIPEP|4285|mitochondrial intermediate peptidase##U80034|MIPEP|4285|mitochondrial intermediate peptidase##AK225290|MIPEP|4285|mitochondrial intermediate peptidase##AK308908|MIPEP|4285|mitochondrial intermediate peptidase##BC009934|MIPEP|4285|mitochondrial intermediate peptidase##NM_005932|MIPEP|4285|mitochondrial intermediate peptidase##BX648244|SPATA13|221178|spermatogenesis associated 13##AK092754|SPATA13|221178|spermatogenesis associated 13##NM_001166271|SPATA13|221178|spermatogenesis associated 13##NM_153023|SPATA13|221178|spermatogenesis associated 13##AK055770|SPATA13|221178|spermatogenesis associated 13	0.144482	0.311196	CTCF.p2:0:0.311
chr22	20968868	20969009	reg1015988.p1	3.810	+	TSC_hg19_v1_chr22_+_20918811 U80745	-50114	+	BC017110 TSC_hg19_v1_chr22_+_20909388	-59631	+	AB463109 CU013137 CU013425 AF328769 TSC_hg19_v1_chr22_+_20861965	-106974	+	L36151 NM_002650	120016	-	TSC_hg19_v1_chr22_+_21128411 NM_000185 AK314200 AK225292 BC035028	159458	+	AB384703 TSC_hg19_v1_chr22_-_21213029 AK302424	244092	-	U80745|MED15|51586|mediator complex subunit 15##BC017110|MED15|51586|mediator complex subunit 15##CU013137|MED15|51586|mediator complex subunit 15##CU013425|MED15|51586|mediator complex subunit 15##AF328769|MED15|51586|mediator complex subunit 15##L36151|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha##NM_002650|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha##NM_000185|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK314200|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK225292|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##BC035028|SERPIND1|3053|serpin peptidase inhibitor, clade D (heparin cofactor), member 1##AK302424|PI4KA|5297|phosphatidylinositol 4-kinase, catalytic, alpha	0.892867	0.0	denovo_WM_7:29:0.748
chr6	139694073	139694147	reg1017001.p1	3.810	+	TSC_hg19_v1_chr6_-_139613136 BX647633 AL834248 AL831988 AK314725 BX647477 BC115383 BC115384 AB085905 NM_153235	-80950	-	BC070068 AB033492 NM_016217 TSC_hg19_v1_chr6_+_139456250	-237854	+	TSC_hg19_v1_chr6_+_139349935 AK309402 AF116682 BC014953	-344192	+	NM_001168389 NM_001168388	1313	-	BC004377 U65093 AF109161 TSC_hg19_v1_chr6_-_139695783	1651	-	NM_006079 TSC_hg19_v1_chr6_-_139695784	1674	-	BX647633|TXLNB|167838|taxilin beta##AL834248|TXLNB|167838|taxilin beta##AL831988|TXLNB|167838|taxilin beta##AK314725|TXLNB|167838|taxilin beta##BX647477|TXLNB|167838|taxilin beta##BC115383|TXLNB|167838|taxilin beta##BC115384|TXLNB|167838|taxilin beta##AB085905|TXLNB|167838|taxilin beta##NM_153235|TXLNB|167838|taxilin beta##BC070068|HECA|51696|headcase homolog (Drosophila)##AB033492|HECA|51696|headcase homolog (Drosophila)##NM_016217|HECA|51696|headcase homolog (Drosophila)##AF116682|C6orf115|58527|chromosome 6 open reading frame 115##BC014953|C6orf115|58527|chromosome 6 open reading frame 115##NM_001168389|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_001168388|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##BC004377|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##U65093|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##AF109161|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2##NM_006079|CITED2|10370|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	0.0	0.0	
chr6	158641996	158642115	reg1009412.p1	3.810	+	NM_207118 TSC_hg19_v1_chr6_+_158589381 AK055106 BC056906 AJ634743	-52664	+	TSC_hg19_v1_chr6_-_158589295 AK027823 BC060795 NM_032861	-52755	-	BC048335 BC001705 BC028594 BX648104 TSC_hg19_v1_chr6_-_158589279	-52815	-	AB037818 AF219946 AF288480 BC152476 NM_001007466 NM_020245 AK311671	91642	+	AK304056 TSC_hg19_v1_chr6_+_158734584	92475	+	TSC_hg19_v1_chr6_+_158734935 AF087973	92864	+	NM_207118|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AK055106|GTF2H5|404672|general transcription factor IIH, polypeptide 5##BC056906|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AJ634743|GTF2H5|404672|general transcription factor IIH, polypeptide 5##AK027823|SERAC1|84947|serine active site containing 1##BC060795|SERAC1|84947|serine active site containing 1##NM_032861|SERAC1|84947|serine active site containing 1##BC048335|SERAC1|84947|serine active site containing 1##BC001705|SERAC1|84947|serine active site containing 1##BC028594|SERAC1|84947|serine active site containing 1##BX648104|SERAC1|84947|serine active site containing 1##AB037818|TULP4|56995|tubby like protein 4##AF219946|TULP4|56995|tubby like protein 4##AF288480|TULP4|56995|tubby like protein 4##BC152476|TULP4|56995|tubby like protein 4##NM_001007466|TULP4|56995|tubby like protein 4##NM_020245|TULP4|56995|tubby like protein 4##AK304056|TULP4|56995|tubby like protein 4	0.0	0.99846	CTCF.p2:24:0.998
chr8	29147769	29147894	reg1016847.p2	3.810	+	BC005977 TSC_hg19_v1_chr8_-_29120611 BC028056 AB014539 AF279865 AK307848 AX721221 AK129580 NM_015254 BC051859	-27217	-	TSC_hg19_v1_chr8_+_28748135 AY522342 DQ269478 BC069242 NM_024567	-399704	+	TSC_hg19_v1_chr8_+_28747911 AK290683 NM_001135726 AK310959	-399914	+	AL137704 NM_057158	58490	-	CU678102 AB463587 EU831463 EU831550 S80632 U48807 BC002671 U21108 TSC_hg19_v1_chr8_-_29208200 BC014565 AK314820 NM_001394	60239	-	AF490252 DQ892451 DQ895663 AY454545 AF100748 AK222632 AK315956 TSC_hg19_v1_chr8_-_29940485	792643	-	BC005977|KIF13B|23303|kinesin family member 13B##BC028056|KIF13B|23303|kinesin family member 13B##AB014539|KIF13B|23303|kinesin family member 13B##AF279865|KIF13B|23303|kinesin family member 13B##AK307848|KIF13B|23303|kinesin family member 13B##AK129580|KIF13B|23303|kinesin family member 13B##NM_015254|KIF13B|23303|kinesin family member 13B##BC051859|KIF13B|23303|kinesin family member 13B##AY522342|HMBOX1|79618|homeobox containing 1##DQ269478|HMBOX1|79618|homeobox containing 1##BC069242|HMBOX1|79618|homeobox containing 1##NM_024567|HMBOX1|79618|homeobox containing 1##AK290683|HMBOX1|79618|homeobox containing 1##NM_001135726|HMBOX1|79618|homeobox containing 1##AK310959|HMBOX1|79618|homeobox containing 1##AL137704|DUSP4|1846|dual specificity phosphatase 4##NM_057158|DUSP4|1846|dual specificity phosphatase 4##EU831463|DUSP4|1846|dual specificity phosphatase 4##EU831550|DUSP4|1846|dual specificity phosphatase 4##S80632|DUSP4|1846|dual specificity phosphatase 4##U48807|DUSP4|1846|dual specificity phosphatase 4##BC002671|DUSP4|1846|dual specificity phosphatase 4##U21108|DUSP4|1846|dual specificity phosphatase 4##BC014565|DUSP4|1846|dual specificity phosphatase 4##AK314820|DUSP4|1846|dual specificity phosphatase 4##NM_001394|DUSP4|1846|dual specificity phosphatase 4##AF490252|TMEM66|51669|transmembrane protein 66##DQ892451|TMEM66|51669|transmembrane protein 66##DQ895663|TMEM66|51669|transmembrane protein 66##AF100748|TMEM66|51669|transmembrane protein 66##AK222632|TMEM66|51669|transmembrane protein 66##AK315956|TMEM66|51669|transmembrane protein 66	0.996963	0.0	
chr1	200831620	200831800	reg1001051.p2	3.809	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-123039	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-192602	-	AK299219 BC020201 TSC_hg19_v1_chr1_-_200639024 AL136611 BC014183 AK307569	-192681	-	BC126386 BC126388 AK315339 NM_005298	10413	+	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	28936	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	32287	+	AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK299219|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC020201|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AL136611|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC014183|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##AK307569|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106	0.997871	0.0	
chr1	54955192	54955277	reg1006741.p2	3.809	+	TSC_hg19_v1_chr1_-_54872087 NM_001009955	-83150	-	NM_018070 NM_145716 TSC_hg19_v1_chr1_-_54872066	-83212	-	CU688156 AK289474 BC003605 BC127866 BC066365 TSC_hg19_v1_chr1_-_54871828 AF500116	-83446	-	TSC_hg19_v1_chr1_+_55007956 AK091112	52727	+	NM_015547 NM_147161 TSC_hg19_v1_chr1_+_55013900 BC001517 AK023937 AK223570 AB014607 BC093844 BC093846 AF416921 AF416922	58660	+	CU676764 AY358629 BC015993 BC020874 NM_176782 AK091901 AX747244	133914	-	NM_001009955|SSBP3|23648|single stranded DNA binding protein 3##NM_018070|SSBP3|23648|single stranded DNA binding protein 3##NM_145716|SSBP3|23648|single stranded DNA binding protein 3##AK289474|SSBP3|23648|single stranded DNA binding protein 3##BC003605|SSBP3|23648|single stranded DNA binding protein 3##BC066365|SSBP3|23648|single stranded DNA binding protein 3##AF500116|SSBP3|23648|single stranded DNA binding protein 3##AK091112|ACOT11|26027|acyl-CoA thioesterase 11##NM_015547|ACOT11|26027|acyl-CoA thioesterase 11##NM_147161|ACOT11|26027|acyl-CoA thioesterase 11##BC001517|ACOT11|26027|acyl-CoA thioesterase 11##AK023937|ACOT11|26027|acyl-CoA thioesterase 11##AK223570|ACOT11|26027|acyl-CoA thioesterase 11##AB014607|ACOT11|26027|acyl-CoA thioesterase 11##BC093844|ACOT11|26027|acyl-CoA thioesterase 11##BC093846|ACOT11|26027|acyl-CoA thioesterase 11##AF416921|ACOT11|26027|acyl-CoA thioesterase 11##AF416922|ACOT11|26027|acyl-CoA thioesterase 11##AY358629|FAM151A|338094|family with sequence similarity 151, member A##BC015993|FAM151A|338094|family with sequence similarity 151, member A##BC020874|FAM151A|338094|family with sequence similarity 151, member A##NM_176782|FAM151A|338094|family with sequence similarity 151, member A##AK091901|FAM151A|338094|family with sequence similarity 151, member A	0.0	0.824891	CTCF.p2:16:0.793
chr16	24020635	24020745	reg1014885.p2	3.809	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-173184	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-173295	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-173358	+	BC037899 NM_006539 AK095553	246184	+	AK055453 TSC_hg19_v1_chr16_+_24267474	246784	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	247008	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	0.997357	0.0	denovo_WM_7:65:0.493	denovo_WM_7:66:0.493
chr20	5022571	5022751	reg1010797.p2	3.809	+	BC013112 AF164142 NM_203327	-31736	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-40501	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-218467	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	70954	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	77894	-	AK300558 AK311014 NM_002592	84565	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.999559	0.0	
chr7	11013523	11013647	reg1018553.p1	3.809	+	TSC_hg19_v1_chr7_+_11013534 AK294419 NM_014660 AK295461 AB018326 BC152414	-75	+	AK130950 TSC_hg19_v1_chr7_-_10979760 AK024837 U94586 BC105295 NM_002489	-33801	-	CR407618 CR541716 TSC_hg19_v1_chr7_-_10979730 AF201077 BC101794 BC101796	-33876	-	TSC_hg19_v1_chr7_-_11871825 AK092252 AX747433 NM_015204	858204	-	TSC_hg19_v1_chr7_+_12250952 NM_001134232 NM_018374 AK311651 AK002135 BC033901 BC028108 BC039741 AK223263	1237340	+	TSC_hg19_v1_chr7_-_12443512 AK075525 BC144316 BC144319	1429947	-	AK294419|PHF14|9678|PHD finger protein 14##NM_014660|PHF14|9678|PHD finger protein 14##AK295461|PHF14|9678|PHD finger protein 14##AB018326|PHF14|9678|PHD finger protein 14##BC152414|PHF14|9678|PHD finger protein 14##AK130950|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK024837|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##U94586|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC105295|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##NM_002489|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##CR407618|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##CR541716|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AF201077|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC101794|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##BC101796|NDUFA4|4697|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa##AK092252|THSD7A|221981|thrombospondin, type I, domain containing 7A##NM_015204|THSD7A|221981|thrombospondin, type I, domain containing 7A##NM_001134232|TMEM106B|54664|transmembrane protein 106B##NM_018374|TMEM106B|54664|transmembrane protein 106B##AK311651|TMEM106B|54664|transmembrane protein 106B##AK002135|TMEM106B|54664|transmembrane protein 106B##BC033901|TMEM106B|54664|transmembrane protein 106B##BC028108|TMEM106B|54664|transmembrane protein 106B##BC039741|TMEM106B|54664|transmembrane protein 106B##AK223263|TMEM106B|54664|transmembrane protein 106B##AK075525|VWDE|221806|von Willebrand factor D and EGF domains##BC144316|VWDE|221806|von Willebrand factor D and EGF domains##BC144319|VWDE|221806|von Willebrand factor D and EGF domains	0.217099	0.0	
chrX	48984315	48984491	reg1015468.p2	3.809	+	AB209806 CU674194 BC000397 BC003148 NM_015698 TSC_hg19_v1_chrX_-_48980086 AK310728 U66359	-4303	-	TSC_hg19_v1_chrX_-_48958083 BC069206 NM_007075	-26311	-	AK023344 TSC_hg19_v1_chrX_-_48937565 NM_001029896	-46831	-	BC067800 NM_001099681 NM_001099682 NM_024859 BC027995	34792	+	TSC_hg19_v1_chrX_+_49020239 AK025340 AK094251 NM_001099680	35851	+	NM_002668 TSC_hg19_v1_chrX_+_49028254 L09604 BC109066 AB591027	43860	+	AB209806|GPKOW|27238|G patch domain and KOW motifs##BC000397|GPKOW|27238|G patch domain and KOW motifs##BC003148|GPKOW|27238|G patch domain and KOW motifs##NM_015698|GPKOW|27238|G patch domain and KOW motifs##U66359|GPKOW|27238|G patch domain and KOW motifs##BC069206|WDR45|11152|WD repeat domain 45##NM_007075|WDR45|11152|WD repeat domain 45##AK023344|WDR45|11152|WD repeat domain 45##NM_001029896|WDR45|11152|WD repeat domain 45##BC067800|MAGIX|79917|MAGI family member, X-linked##NM_001099681|MAGIX|79917|MAGI family member, X-linked##NM_001099682|MAGIX|79917|MAGI family member, X-linked##NM_024859|MAGIX|79917|MAGI family member, X-linked##BC027995|MAGIX|79917|MAGI family member, X-linked##AK025340|MAGIX|79917|MAGI family member, X-linked##AK094251|MAGIX|79917|MAGI family member, X-linked##NM_001099680|MAGIX|79917|MAGI family member, X-linked##NM_002668|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##L09604|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)##BC109066|PLP2|5355|proteolipid protein 2 (colonic epithelium-enriched)	0.0	0.0	
chr10	64413084	64413243	reg1016316.p1	3.808	+	AJ505150 NM_199452	-132957	+	NM_014951 NM_199450 NM_199451 AB020651 AJ505148 AJ505149 BC035049 BC060817 TSC_hg19_v1_chr10_+_64134088 BC017841 BC070073 AJ505147 AK289808 AK289515	-279120	+	TSC_hg19_v1_chr10_-_64028481 AY150309 BC025765 NM_145307 BC141821 BC142725	-384624	-	TSC_hg19_v1_chr10_+_64564497 AK127694 NM_032804	151379	+	TSC_hg19_v1_chr10_+_64564619 BC018660 BC028589 BC067740	151494	+	AK091399 TSC_hg19_v1_chr10_-_64576114 BC035625 CR749641	162934	-	AJ505150|ZNF365|22891|zinc finger protein 365##NM_199452|ZNF365|22891|zinc finger protein 365##NM_014951|ZNF365|22891|zinc finger protein 365##NM_199450|ZNF365|22891|zinc finger protein 365##NM_199451|ZNF365|22891|zinc finger protein 365##AB020651|ZNF365|22891|zinc finger protein 365##AJ505148|ZNF365|22891|zinc finger protein 365##AJ505149|ZNF365|22891|zinc finger protein 365##BC035049|ZNF365|22891|zinc finger protein 365##BC060817|ZNF365|22891|zinc finger protein 365##BC017841|ZNF365|22891|zinc finger protein 365##BC070073|ZNF365|22891|zinc finger protein 365##AJ505147|ZNF365|22891|zinc finger protein 365##AK289808|ZNF365|22891|zinc finger protein 365##AK289515|ZNF365|22891|zinc finger protein 365##AY150309|RTKN2|219790|rhotekin 2##BC025765|RTKN2|219790|rhotekin 2##NM_145307|RTKN2|219790|rhotekin 2##BC141821|RTKN2|219790|rhotekin 2##BC142725|RTKN2|219790|rhotekin 2##AK127694|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##NM_032804|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC018660|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC028589|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##BC067740|ADO|84890|2-aminoethanethiol (cysteamine) dioxygenase##AK091399|EGR2|1959|early growth response 2##BC035625|EGR2|1959|early growth response 2##CR749641|EGR2|1959|early growth response 2	0.982457	0.0	denovo_WM_7:-50:0.971
chr1	12147888	12147980	reg1007673.p1	3.808	+	M83554 NM_001243 BC136400 BC171762 S75768	-24390	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-68364	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-68400	+	D86042 BC063482 NM_152942 BC073839 BC141804	38082	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	79127	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	79177	+	M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.905915	0.0	
chr16	10961067	10961170	reg1018501.p1	3.808	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-48570	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-123414	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-172353	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	9994	+	BC071683 TSC_hg19_v1_chr16_-_11036171	75048	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	75117	-	BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)	0.948852	0.0	denovo_WM_7:-9:0.949
chr17	30466012	30466128	reg1013832.p1	3.808	+	AY386261 AK302740 BC117373 BC143578 BC143581 AK310287 NM_052888 HQ258530 AJ314647	-117977	+	AB385289 TSC_hg19_v1_chr17_+_30264319	-201776	+	TSC_hg19_v1_chr17_+_30264164 BC015704	-201907	+	TSC_hg19_v1_chr17_+_30469463 BC060781 NM_001033566 NM_001033568 NM_018307 AJ496730	3358	+	TSC_hg19_v1_chr17_+_30469520 BC041114	3452	+	TSC_hg19_v1_chr17_+_30469544 BC110895	3475	+	AY386261|LRRC37B|114659|leucine rich repeat containing 37B##AK302740|LRRC37B|114659|leucine rich repeat containing 37B##BC117373|LRRC37B|114659|leucine rich repeat containing 37B##BC143578|LRRC37B|114659|leucine rich repeat containing 37B##BC143581|LRRC37B|114659|leucine rich repeat containing 37B##AK310287|LRRC37B|114659|leucine rich repeat containing 37B##NM_052888|LRRC37B|114659|leucine rich repeat containing 37B##HQ258530|LRRC37B|114659|leucine rich repeat containing 37B##AJ314647|LRRC37B|114659|leucine rich repeat containing 37B##BC015704|SUZ12|23512|suppressor of zeste 12 homolog (Drosophila)##BC060781|RHOT1|55288|ras homolog gene family, member T1##NM_001033566|RHOT1|55288|ras homolog gene family, member T1##NM_001033568|RHOT1|55288|ras homolog gene family, member T1##NM_018307|RHOT1|55288|ras homolog gene family, member T1##AJ496730|RHOT1|55288|ras homolog gene family, member T1##BC041114|RHOT1|55288|ras homolog gene family, member T1##BC110895|RHOT1|55288|ras homolog gene family, member T1	0.0	0.838829	CTCF.p2:17:0.821
chr18	49181963	49182096	reg1015328.p2	3.808	+	TSC_hg19_v1_chr18_-_48724033 NM_016626	-457989	-	AY950679 TSC_hg19_v1_chr18_-_48723734	-458317	-	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	-458803	-	NM_005215 TSC_hg19_v1_chr18_+_49866541	684512	+	TSC_hg19_v1_chr18_+_49867069 M32292 AB527335 X76132	685084	+	TSC_hg19_v1_chr18_-_51690988 AL110266	2508963	-	NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_005215|DCC|1630|deleted in colorectal carcinoma##M32292|DCC|1630|deleted in colorectal carcinoma##X76132|DCC|1630|deleted in colorectal carcinoma##AL110266|MBD2|8932|methyl-CpG binding domain protein 2	0.0	0.0	
chr3	47514633	47514748	reg1013379.p1	3.808	+	AB040904 NM_015466 TSC_hg19_v1_chr3_+_47422510 AK055157 AK299906 AK295888 AK289502 AB025194 AF290614 AK295877 BC089042	-92158	+	NM_025010 TSC_hg19_v1_chr3_+_47324433 AK023765 AK291477 AK295292 BX537953 BC015962 AB527175 AM393269 AM393767 BC032620	-190262	+	BC015311 NM_001134878 NM_022342 NM_182902	-190395	-	TSC_hg19_v1_chr3_-_47517349 AK300311	2647	-	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	2742	-	DQ787088 BC000623 BC014204 TSC_hg19_v1_chr3_-_47555203 AK225721 AK000218 AK298202 NM_001031703	40452	-	AB040904|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_015466|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK055157|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK299906|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295888|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK289502|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AB025194|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AF290614|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295877|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##BC089042|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_025010|KLHL18|23276|kelch-like 18 (Drosophila)##AK023765|KLHL18|23276|kelch-like 18 (Drosophila)##AK291477|KLHL18|23276|kelch-like 18 (Drosophila)##AK295292|KLHL18|23276|kelch-like 18 (Drosophila)##BX537953|KLHL18|23276|kelch-like 18 (Drosophila)##BC015962|KLHL18|23276|kelch-like 18 (Drosophila)##AM393269|KLHL18|23276|kelch-like 18 (Drosophila)##AM393767|KLHL18|23276|kelch-like 18 (Drosophila)##BC032620|KLHL18|23276|kelch-like 18 (Drosophila)##BC015311|KIF9|64147|kinesin family member 9##NM_001134878|KIF9|64147|kinesin family member 9##NM_022342|KIF9|64147|kinesin family member 9##NM_182902|KIF9|64147|kinesin family member 9##AK300311|SCAP|22937|SREBF chaperone##AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone##DQ787088|C3orf75|54859|chromosome 3 open reading frame 75##BC000623|C3orf75|54859|chromosome 3 open reading frame 75##BC014204|C3orf75|54859|chromosome 3 open reading frame 75##AK225721|C3orf75|54859|chromosome 3 open reading frame 75##AK000218|C3orf75|54859|chromosome 3 open reading frame 75##AK298202|C3orf75|54859|chromosome 3 open reading frame 75##NM_001031703|C3orf75|54859|chromosome 3 open reading frame 75	0.0	0.0	
chr3	89772746	89772897	reg1019197.p2	3.808	+	M83941 AF213460 BC026247 TSC_hg19_v1_chr3_+_89156840 AK291411 AB384708	-615971	+	AF213459 NM_005233 NM_182644 BC063282 TSC_hg19_v1_chr3_+_89156770	-616100	+	AL832398 NM_173824 TSC_hg19_v1_chr3_+_88199126 BC024188 AK297719 AK313547	-1573793	+	AB590252 DQ892389 DQ895602 TSC_hg19_v1_chr3_-_93692741 Y00692 AK292994	3919855	-	TSC_hg19_v1_chr3_-_93692932 BC015801 NM_000313	3920097	-	TSC_hg19_v1_chr3_+_93698998 BC073842 NM_001174150 NM_001174151 NM_144996 NM_182896 CR936753 BC094725 BC104033 BC104034 BC104035 BC104036 AK299284 BC031093 AK296994 BC062993 BC015439 CR936763 AL713789 CR936756	3926206	+	M83941|EPHA3|2042|EPH receptor A3##AF213460|EPHA3|2042|EPH receptor A3##BC026247|EPHA3|2042|EPH receptor A3##AK291411|EPHA3|2042|EPH receptor A3##AF213459|EPHA3|2042|EPH receptor A3##NM_005233|EPHA3|2042|EPH receptor A3##NM_182644|EPHA3|2042|EPH receptor A3##BC063282|EPHA3|2042|EPH receptor A3##AL832398|C3orf38|285237|chromosome 3 open reading frame 38##NM_173824|C3orf38|285237|chromosome 3 open reading frame 38##BC024188|C3orf38|285237|chromosome 3 open reading frame 38##AK297719|C3orf38|285237|chromosome 3 open reading frame 38##AK313547|C3orf38|285237|chromosome 3 open reading frame 38##DQ892389|PROS1|5627|protein S (alpha)##DQ895602|PROS1|5627|protein S (alpha)##Y00692|PROS1|5627|protein S (alpha)##AK292994|PROS1|5627|protein S (alpha)##BC015801|PROS1|5627|protein S (alpha)##NM_000313|PROS1|5627|protein S (alpha)##BC073842|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174150|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_001174151|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_144996|ARL13B|200894|ADP-ribosylation factor-like 13B##NM_182896|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936753|ARL13B|200894|ADP-ribosylation factor-like 13B##BC094725|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104033|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104034|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104035|ARL13B|200894|ADP-ribosylation factor-like 13B##BC104036|ARL13B|200894|ADP-ribosylation factor-like 13B##AK299284|ARL13B|200894|ADP-ribosylation factor-like 13B##BC031093|ARL13B|200894|ADP-ribosylation factor-like 13B##AK296994|ARL13B|200894|ADP-ribosylation factor-like 13B##BC062993|ARL13B|200894|ADP-ribosylation factor-like 13B##BC015439|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936763|ARL13B|200894|ADP-ribosylation factor-like 13B##AL713789|ARL13B|200894|ADP-ribosylation factor-like 13B##CR936756|ARL13B|200894|ADP-ribosylation factor-like 13B	0.0	0.0	
chr4	71271536	71271654	reg1004684.p1	3.808	+	NM_021225 BC092438 S83198	-7950	+	NM_006685 AK130485 BC094707 D29833 BC015327	-22769	+	AK312075 NM_012390 BC140927 BC144529	-45084	+	NM_001145006	24613	+	NM_001145007	66079	+	NM_152291 AK093828 AK312855 BX647190 BC025688 L13283	66290	+	NM_021225|PROL1|58503|proline rich, lacrimal 1##BC092438|PROL1|58503|proline rich, lacrimal 1##S83198|PROL1|58503|proline rich, lacrimal 1##NM_006685|SMR3B|10879|submaxillary gland androgen regulated protein 3B##BC094707|SMR3B|10879|submaxillary gland androgen regulated protein 3B##D29833|SMR3B|10879|submaxillary gland androgen regulated protein 3B##BC015327|SMR3B|10879|submaxillary gland androgen regulated protein 3B##AK312075|SMR3A|26952|submaxillary gland androgen regulated protein 3A##NM_012390|SMR3A|26952|submaxillary gland androgen regulated protein 3A##BC140927|SMR3A|26952|submaxillary gland androgen regulated protein 3A##BC144529|SMR3B|10879|submaxillary gland androgen regulated protein 3B##NM_001145006|MUC7|4589|mucin 7, secreted##NM_001145007|MUC7|4589|mucin 7, secreted##NM_152291|MUC7|4589|mucin 7, secreted##AK093828|MUC7|4589|mucin 7, secreted##AK312855|MUC7|4589|mucin 7, secreted##BX647190|MUC7|4589|mucin 7, secreted##BC025688|MUC7|4589|mucin 7, secreted##L13283|MUC7|4589|mucin 7, secreted	0.602416	0.016228	
chr6	108582630	108582810	reg1008163.p1	3.808	+	TSC_hg19_v1_chr6_-_108582316 NM_003795 NM_152827	-335	-	TSC_hg19_v1_chr6_-_108582245 BC015179 BC014580 AK289476	-482	-	TSC_hg19_v1_chr6_-_108582217 BC008444	-526	-	TSC_hg19_v1_chr6_+_108616194 AF520418 BC018445 NM_145315	33419	+	TSC_hg19_v1_chr6_+_108881027 NM_201559 BC020227 BC021224	298303	+	BC068552 NM_001455 TSC_hg19_v1_chr6_+_108882081 AK092357	299355	+	NM_003795|SNX3|8724|sorting nexin 3##NM_152827|SNX3|8724|sorting nexin 3##BC015179|SNX3|8724|sorting nexin 3##BC014580|SNX3|8724|sorting nexin 3##AK289476|SNX3|8724|sorting nexin 3##BC008444|SNX3|8724|sorting nexin 3##AF520418|LACE1|246269|lactation elevated 1##BC018445|LACE1|246269|lactation elevated 1##NM_145315|LACE1|246269|lactation elevated 1##NM_201559|FOXO3|2309|forkhead box O3##BC020227|FOXO3|2309|forkhead box O3##BC021224|FOXO3|2309|forkhead box O3##BC068552|FOXO3|2309|forkhead box O3##NM_001455|FOXO3|2309|forkhead box O3##AK092357|FOXO3|2309|forkhead box O3	0.0	0.0	
chr6	24274735	24274835	reg1005737.p1	3.808	+	AK096290 TSC_hg19_v1_chr6_+_24126442 NM_080723 AK311178 AK314373 AK225775 AF418980 BC023514 AL833257 BC067291	-148355	+	TSC_hg19_v1_chr6_+_22569661 NM_138574 AK302110 AK056824	-1705060	+	X54394 X54393 GQ305133 M58594 NM_001163558	-1971738	-	AF181722 NM_181337	82345	+	AF181721 NM_016356	83494	-	BC050704 NM_001195610	108734	-	AK096290|NRSN1|140767|neurensin 1##NM_080723|NRSN1|140767|neurensin 1##AK314373|NRSN1|140767|neurensin 1##AK225775|NRSN1|140767|neurensin 1##AF418980|NRSN1|140767|neurensin 1##BC023514|NRSN1|140767|neurensin 1##AL833257|NRSN1|140767|neurensin 1##BC067291|NRSN1|140767|neurensin 1##NM_138574|HDGFL1|154150|hepatoma derived growth factor-like 1##AK056824|HDGFL1|154150|hepatoma derived growth factor-like 1##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin##AF181722|KAAG1|353219|kidney associated antigen 1##NM_181337|KAAG1|353219|kidney associated antigen 1##AF181721|DCDC2|51473|doublecortin domain containing 2##NM_016356|DCDC2|51473|doublecortin domain containing 2##BC050704|DCDC2|51473|doublecortin domain containing 2##NM_001195610|DCDC2|51473|doublecortin domain containing 2	1.949159	0.0	
chr10	34660282	34660348	reg1009649.p1	3.807	+	TSC_hg19_v1_chr10_-_33623996 BX648025	-1036317	-	TSC_hg19_v1_chr10_-_33623799 BX648250 CR749333 NM_001024628 NM_001024629 NM_001244972 NM_001244973 NM_003873	-1036501	-	TSC_hg19_v1_chr10_-_33623471 AF016050 AF018956 AF145712 AF280547 AY249243 BT006995 CU675785 EU831654 EU831737 AF268691 BC007737 AB209641 AK292822 AL833608 BC007533	-1036862	-	AX765706 TSC_hg19_v1_chr10_-_35104251 AB073671 AF252293 AF332592 AF332593 AF467002 AF467003 AF467004 AF467005 AF467006 AX765704 BC071566 AF196185 AF196186 AF454058 NM_001184785 NM_001184786 NM_001184787 NM_001184788 NM_001184789 NM_001184790 NM_001184791 NM_001184792 NM_001184793 NM_001184794 NM_019619	443836	-	AK310225 AK300491 NM_001198778 NM_001198779	702897	-	TSC_hg19_v1_chr10_-_35379260 U83410 AK294080 BC009591 NM_003591	718957	-	BX648025|NRP1|8829|neuropilin 1##BX648250|NRP1|8829|neuropilin 1##CR749333|NRP1|8829|neuropilin 1##NM_001024628|NRP1|8829|neuropilin 1##NM_001024629|NRP1|8829|neuropilin 1##NM_001244972|NRP1|8829|neuropilin 1##NM_001244973|NRP1|8829|neuropilin 1##NM_003873|NRP1|8829|neuropilin 1##AF016050|NRP1|8829|neuropilin 1##AF018956|NRP1|8829|neuropilin 1##AF145712|NRP1|8829|neuropilin 1##AF280547|NRP1|8829|neuropilin 1##AY249243|NRP1|8829|neuropilin 1##BT006995|NRP1|8829|neuropilin 1##EU831654|NRP1|8829|neuropilin 1##EU831737|NRP1|8829|neuropilin 1##AF268691|NRP1|8829|neuropilin 1##BC007737|NRP1|8829|neuropilin 1##AB209641|NRP1|8829|neuropilin 1##AK292822|NRP1|8829|neuropilin 1##AL833608|NRP1|8829|neuropilin 1##BC007533|NRP1|8829|neuropilin 1##AB073671|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF252293|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332592|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF332593|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467002|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467003|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467004|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467005|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF467006|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##BC071566|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196185|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF196186|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AF454058|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184785|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184786|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184787|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184788|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184789|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184790|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184791|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184792|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184793|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_001184794|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##NM_019619|PARD3|56288|par-3 partitioning defective 3 homolog (C. elegans)##AK310225|CUL2|8453|cullin 2##AK300491|CUL2|8453|cullin 2##NM_001198778|CUL2|8453|cullin 2##NM_001198779|CUL2|8453|cullin 2##U83410|CUL2|8453|cullin 2##AK294080|CUL2|8453|cullin 2##BC009591|CUL2|8453|cullin 2##NM_003591|CUL2|8453|cullin 2	0.699942	0.0	denovo_WM_7:107:0.700
chr14	103073010	103073190	reg1007232.p2	3.807	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-13939	+	TSC_hg19_v1_chr14_+_103058991 NM_015156 BC051003 BC064495	-14102	+	TSC_hg19_v1_chr14_-_102976110 BX161460 NM_152326	-96986	-	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	170719	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	170800	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	315898	+	AF155595|RCOR1|23186|REST corepressor 1##NM_015156|RCOR1|23186|REST corepressor 1##BC051003|RCOR1|23186|REST corepressor 1##BC064495|RCOR1|23186|REST corepressor 1##BX161460|ANKRD9|122416|ankyrin repeat domain 9##NM_152326|ANKRD9|122416|ankyrin repeat domain 9##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)	0.0	0.0	
chr17	76309706	76309846	reg1019119.p1	3.807	+	BC042066 NM_001204210 NM_001204211 NM_001204212 BC148207	-82313	+	TSC_hg19_v1_chr17_+_76210353 AK223428 BC000784 BC034148 AY927772 BC002388 BC008718 HM625836 AB028869 AF077350 AK311917 BC065497 AB590059 AM393128 AB154416 AY830084 CR541740 DQ227257 DQ310375 DQ310376 DQ310377 DQ310378 DQ310379 DQ508249 DQ508245 DQ508246 DQ508247 DQ508248	-99379	+	NM_001012270 NM_001012271 NM_001168 TSC_hg19_v1_chr17_+_76210320 AK301793	-99477	+	TSC_hg19_v1_chr17_-_76356159 AK309756 AK314212 BC060858 NM_003955	46381	-	TSC_hg19_v1_chr17_+_76374729 AK316147 AK307874 AK296882 AK024529 AK225030 AK316405 BC108732 NM_024419 BC035662 AK297156 BC008903 BC015570 BC025951	64954	+	NM_173628	263699	-	BC042066|TMEM235|283999|transmembrane protein 235##NM_001204210|TMEM235|283999|transmembrane protein 235##NM_001204211|TMEM235|283999|transmembrane protein 235##NM_001204212|TMEM235|283999|transmembrane protein 235##BC148207|TMEM235|283999|transmembrane protein 235##AK223428|BIRC5|332|baculoviral IAP repeat containing 5##BC000784|BIRC5|332|baculoviral IAP repeat containing 5##BC034148|BIRC5|332|baculoviral IAP repeat containing 5##AY927772|BIRC5|332|baculoviral IAP repeat containing 5##BC008718|BIRC5|332|baculoviral IAP repeat containing 5##HM625836|BIRC5|332|baculoviral IAP repeat containing 5##AB028869|BIRC5|332|baculoviral IAP repeat containing 5##AF077350|BIRC5|332|baculoviral IAP repeat containing 5##AK311917|BIRC5|332|baculoviral IAP repeat containing 5##BC065497|BIRC5|332|baculoviral IAP repeat containing 5##AM393128|BIRC5|332|baculoviral IAP repeat containing 5##AB154416|BIRC5|332|baculoviral IAP repeat containing 5##AY830084|BIRC5|332|baculoviral IAP repeat containing 5##CR541740|BIRC5|332|baculoviral IAP repeat containing 5##DQ227257|BIRC5|332|baculoviral IAP repeat containing 5##DQ310375|BIRC5|332|baculoviral IAP repeat containing 5##DQ310376|BIRC5|332|baculoviral IAP repeat containing 5##DQ310377|BIRC5|332|baculoviral IAP repeat containing 5##DQ310378|BIRC5|332|baculoviral IAP repeat containing 5##DQ310379|BIRC5|332|baculoviral IAP repeat containing 5##DQ508249|BIRC5|332|baculoviral IAP repeat containing 5##DQ508245|BIRC5|332|baculoviral IAP repeat containing 5##DQ508246|BIRC5|332|baculoviral IAP repeat containing 5##DQ508247|BIRC5|332|baculoviral IAP repeat containing 5##DQ508248|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012270|BIRC5|332|baculoviral IAP repeat containing 5##NM_001012271|BIRC5|332|baculoviral IAP repeat containing 5##NM_001168|BIRC5|332|baculoviral IAP repeat containing 5##AK301793|BIRC5|332|baculoviral IAP repeat containing 5##AK309756|SOCS3|9021|suppressor of cytokine signaling 3##AK314212|SOCS3|9021|suppressor of cytokine signaling 3##BC060858|SOCS3|9021|suppressor of cytokine signaling 3##NM_003955|SOCS3|9021|suppressor of cytokine signaling 3##AK316147|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK307874|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK296882|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK024529|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK225030|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK316405|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC108732|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_024419|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC035662|PGS1|9489|phosphatidylglycerophosphate synthase 1##AK297156|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC008903|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC015570|PGS1|9489|phosphatidylglycerophosphate synthase 1##BC025951|PGS1|9489|phosphatidylglycerophosphate synthase 1##NM_173628|DNAH17|8632|dynein, axonemal, heavy chain 17	0.999731	0.0	
chr19	12848158	12848294	reg1016638.p1	3.807	+	TSC_hg19_v1_chr19_-_12845557 BC040846	-2678	-	TSC_hg19_v1_chr19_-_12845516 BC000216 NM_024038 BC001840	-2704	-	TSC_hg19_v1_chr19_-_12845497 BC015347 AK315754 AK027588	-2738	-	TSC_hg19_v1_chr19_+_12848310 NM_004317 AK223363 AK291855 AK293588 AF047469 BC002651 CU678092 U60276	98	+	AF440756 AY515705 NM_017682 AK000139 AK225232	15212	+	CU680326 DQ891339 DQ893360 DQ894521 DQ896679 AB527820 TSC_hg19_v1_chr19_-_12886342 AF044924 BC012443	38101	-	BC040846|C19orf43|79002|chromosome 19 open reading frame 43##BC000216|C19orf43|79002|chromosome 19 open reading frame 43##NM_024038|C19orf43|79002|chromosome 19 open reading frame 43##BC015347|C19orf43|79002|chromosome 19 open reading frame 43##AK315754|C19orf43|79002|chromosome 19 open reading frame 43##AK027588|C19orf43|79002|chromosome 19 open reading frame 43##NM_004317|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK223363|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK291855|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AK293588|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF047469|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##BC002651|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##U60276|ASNA1|439|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)##AF440756|BEST2|54831|bestrophin 2##AY515705|BEST2|54831|bestrophin 2##NM_017682|BEST2|54831|bestrophin 2##AK000139|BEST2|54831|bestrophin 2##AK225232|BEST2|54831|bestrophin 2##DQ891339|HOOK2|29911|hook homolog 2 (Drosophila)##DQ893360|HOOK2|29911|hook homolog 2 (Drosophila)##DQ894521|HOOK2|29911|hook homolog 2 (Drosophila)##DQ896679|HOOK2|29911|hook homolog 2 (Drosophila)##AF044924|HOOK2|29911|hook homolog 2 (Drosophila)##BC012443|HOOK2|29911|hook homolog 2 (Drosophila)	0.0	0.0	
chr21	17108328	17108444	reg1017278.p1	3.807	+	TSC_hg19_v1_chr21_+_17102383 NM_013396 AF134213 BC015930 CU677515 CU687288 FJ763652	-5845	+	TSC_hg19_v1_chr21_+_17102300 AF170562 BC075792	-6061	+	AK289786 NM_003489 TSC_hg19_v1_chr21_-_16437302	-671169	-	TSC_hg19_v1_chr21_+_18885168 NM_001207063 NM_001207064 NM_001207065 NM_001207066 NM_001338	1776777	+	TSC_hg19_v1_chr21_+_18885364 BC003684 AK313526 BC010536 Y07593 DQ891181 DQ894363 AF124598 AY072910 AY072911 AY072912 BT019876 GU474812 U90716	1776985	+	D64110 TSC_hg19_v1_chr21_-_18985177 BC011957	1876754	-	NM_013396|USP25|29761|ubiquitin specific peptidase 25##AF134213|USP25|29761|ubiquitin specific peptidase 25##BC015930|USP25|29761|ubiquitin specific peptidase 25##FJ763652|USP25|29761|ubiquitin specific peptidase 25##AF170562|USP25|29761|ubiquitin specific peptidase 25##BC075792|USP25|29761|ubiquitin specific peptidase 25##AK289786|NRIP1|8204|nuclear receptor interacting protein 1##NM_003489|NRIP1|8204|nuclear receptor interacting protein 1##NM_001207063|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207064|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207065|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001207066|CXADR|1525|coxsackie virus and adenovirus receptor##NM_001338|CXADR|1525|coxsackie virus and adenovirus receptor##BC003684|CXADR|1525|coxsackie virus and adenovirus receptor##AK313526|CXADR|1525|coxsackie virus and adenovirus receptor##BC010536|CXADR|1525|coxsackie virus and adenovirus receptor##Y07593|CXADR|1525|coxsackie virus and adenovirus receptor##DQ891181|CXADR|1525|coxsackie virus and adenovirus receptor##DQ894363|CXADR|1525|coxsackie virus and adenovirus receptor##AF124598|CXADR|1525|coxsackie virus and adenovirus receptor##AY072910|CXADR|1525|coxsackie virus and adenovirus receptor##AY072911|CXADR|1525|coxsackie virus and adenovirus receptor##AY072912|CXADR|1525|coxsackie virus and adenovirus receptor##BT019876|CXADR|1525|coxsackie virus and adenovirus receptor##GU474812|CXADR|1525|coxsackie virus and adenovirus receptor##U90716|CXADR|1525|coxsackie virus and adenovirus receptor##D64110|BTG3|10950|BTG family, member 3##BC011957|BTG3|10950|BTG family, member 3	0.047785	0.0	
chr2	172250885	172250962	reg1017497.p2	3.807	+	AK090779 NM_001136554	-163100	-	TSC_hg19_v1_chr2_-_172017431 AK091975 NM_012290	-233424	-	TSC_hg19_v1_chr2_-_172017240 DQ890904 DQ894057 BC032657 D50927 AK292508 AF162666 AB004885	-233827	-	TSC_hg19_v1_chr2_-_172290501 AK124092 BC025250 AK024046	39603	-	TSC_hg19_v1_chr2_+_172290743 AK307877 NM_001164821 NM_025000	39839	+	TSC_hg19_v1_chr2_+_172290824 CR933646	39888	+	AK090779|TLK1|9874|tousled-like kinase 1##NM_001136554|TLK1|9874|tousled-like kinase 1##AK091975|TLK1|9874|tousled-like kinase 1##NM_012290|TLK1|9874|tousled-like kinase 1##DQ890904|TLK1|9874|tousled-like kinase 1##DQ894057|TLK1|9874|tousled-like kinase 1##BC032657|TLK1|9874|tousled-like kinase 1##D50927|TLK1|9874|tousled-like kinase 1##AK292508|TLK1|9874|tousled-like kinase 1##AF162666|TLK1|9874|tousled-like kinase 1##AB004885|TLK1|9874|tousled-like kinase 1##AK124092|METTL8|79828|methyltransferase like 8##BC025250|METTL8|79828|methyltransferase like 8##AK024046|METTL8|79828|methyltransferase like 8##AK307877|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_001164821|DCAF17|80067|DDB1 and CUL4 associated factor 17##NM_025000|DCAF17|80067|DDB1 and CUL4 associated factor 17##CR933646|DCAF17|80067|DDB1 and CUL4 associated factor 17	0.885821	0.0	denovo_WM_7:-9:0.713
chr7	2277448	2277516	reg1013986.p1	3.807	+	TSC_hg19_v1_chr7_-_2272581 AK090959 AK310831 AK314227 AX746704 NM_001013836 NM_001013837 NM_003550	-4902	-	TSC_hg19_v1_chr7_-_2272559 AF083811	-4922	-	AK310481 TSC_hg19_v1_chr7_-_2272542	-4947	-	TSC_hg19_v1_chr7_-_2281812 BC114514 BC114564	4325	-	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	4351	-	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	4393	+	AK090959|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310831|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK314227|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001013836|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_001013837|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##NM_003550|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AF083811|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##AK310481|MAD1L1|8379|MAD1 mitotic arrest deficient-like 1 (yeast)##BC114514|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC114564|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1	1.087916	0.0	
chr8	120968800	120968939	reg1016472.p1	3.807	+	NM_022783 TSC_hg19_v1_chr8_+_120885965 AK315175 AK225168 AK297822 AL136678 AK225675 BC024746 AK022490 BC012040 AM392576 AM393333 AB527130 AK023916	-82865	+	DQ891267 DQ894455 TSC_hg19_v1_chr8_-_120868155 AK315356 AK074355 BC001531 AY358866 AK054585 BC001316 NM_024094	-100755	-	BC035673 AF026445 BC047732 TSC_hg19_v1_chr8_-_120845082 BC064830 NM_003184 AK316592	-123792	-	TSC_hg19_v1_chr8_+_121137341 NM_021110 Y11709 AK293080 AK307716 AK311498	168486	+	CU692406 DQ893117 DQ893487 DQ896395 AK307322 TSC_hg19_v1_chr8_-_121457370 AB049640 AF112214 BC009190	488486	-	TSC_hg19_v1_chr8_-_121457391 AK311924	488524	-	NM_022783|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK315175|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225168|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK297822|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AL136678|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK225675|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC024746|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK022490|DEPTOR|64798|DEP domain containing MTOR-interacting protein##BC012040|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM392576|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AM393333|DEPTOR|64798|DEP domain containing MTOR-interacting protein##AK023916|DEPTOR|64798|DEP domain containing MTOR-interacting protein##DQ891267|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##DQ894455|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK315356|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK074355|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001531|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AY358866|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##AK054585|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC001316|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##NM_024094|DSCC1|79075|defective in sister chromatid cohesion 1 homolog (S. cerevisiae)##BC035673|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##AF026445|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##BC047732|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##BC064830|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##NM_003184|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##AK316592|TAF2|6873|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa##NM_021110|COL14A1|7373|collagen, type XIV, alpha 1##Y11709|COL14A1|7373|collagen, type XIV, alpha 1##AK293080|COL14A1|7373|collagen, type XIV, alpha 1##AK307716|COL14A1|7373|collagen, type XIV, alpha 1##AK311498|COL14A1|7373|collagen, type XIV, alpha 1##DQ893117|MRPL13|28998|mitochondrial ribosomal protein L13##DQ893487|MRPL13|28998|mitochondrial ribosomal protein L13##DQ896395|MRPL13|28998|mitochondrial ribosomal protein L13##AK307322|MRPL13|28998|mitochondrial ribosomal protein L13##AB049640|MRPL13|28998|mitochondrial ribosomal protein L13##AF112214|MRPL13|28998|mitochondrial ribosomal protein L13##BC009190|MRPL13|28998|mitochondrial ribosomal protein L13##AK311924|MRPL13|28998|mitochondrial ribosomal protein L13	1.995338	0.0	denovo_WM_7:70:0.229	denovo_WM_7:71:0.229	denovo_WM_7:72:0.229	denovo_WM_7:73:0.229	denovo_WM_7:100:0.698
chrX	42862266	42862357	reg1016191.p1	3.807	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	-1079986	-	BC070180 NM_080817 AK122626 AK313702 AL832460	-1278891	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-1314044	+	BC044787 TSC_hg19_v1_chrX_+_43514289	651912	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	653103	+	TSC_hg19_v1_chrX_+_43515457 M68840	653169	+	AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A##M68840|MAOA|4128|monoamine oxidase A	0.0	0.0	
chr10	5730285	5730465	reg1012423.p1	3.806	+	TSC_hg19_v1_chr10_+_5726806 CR936780 NM_017782	-3552	+	AK292071 TSC_hg19_v1_chr10_-_5708559 AK091935 AX747265 NM_024701	-21818	-	TSC_hg19_v1_chr10_-_5708534 CR457302 BC012056 AF403031 AK023196	-21849	-	TSC_hg19_v1_chr10_+_5772610 AB095927	42297	+	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	124891	-	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	125060	-	CR936780|FAM208B|54906|family with sequence similarity 208, member B##NM_017782|FAM208B|54906|family with sequence similarity 208, member B##AK292071|ASB13|79754|ankyrin repeat and SOCS box containing 13##AK091935|ASB13|79754|ankyrin repeat and SOCS box containing 13##NM_024701|ASB13|79754|ankyrin repeat and SOCS box containing 13##CR457302|ASB13|79754|ankyrin repeat and SOCS box containing 13##BC012056|ASB13|79754|ankyrin repeat and SOCS box containing 13##AF403031|ASB13|79754|ankyrin repeat and SOCS box containing 13##AK023196|ASB13|79754|ankyrin repeat and SOCS box containing 13##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2	1.516447	0.0	denovo_WM_7:1:0.263	denovo_WM_7:-15:0.415
chr14	61968662	61968792	reg1011772.p1	3.806	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-180200	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-220205	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-220533	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	193463	+	FJ790247 NM_001243084	195612	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	260392	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	1.754942	0.0	denovo_WM_7:64:0.301	denovo_WM_7:65:0.301	denovo_WM_7:66:0.305
chr14	72649162	72649342	reg1011771.p1	3.806	+	NM_001204416 NM_001204417 NM_001204418 NM_001204419 NM_001204420 NM_001204421 NM_001204422 NM_004296 AF073920 BC104877 BC113572 BC143699 AB209462	-249386	+	TSC_hg19_v1_chr14_+_72399149 AK294486 NM_001204424	-250099	+	AK294895 NM_001204423	-250436	+	TSC_hg19_v1_chr14_-_73360810 AY803021 CU687430 EU446740 AK024141 AK294425 BC026305 BC060801 NM_012074	711556	-	AK315499 NM_001163508 NM_001163509 NM_015604 NM_181340 NM_181341 BX161489 AK297571 TSC_hg19_v1_chr14_+_73393208 BC035901 AK300786 AK027745 AK297742 BX247962 BC018979	743883	+	AK098542 AF311602 NM_178441	804405	-	NM_001204416|RGS6|9628|regulator of G-protein signaling 6##NM_001204417|RGS6|9628|regulator of G-protein signaling 6##NM_001204418|RGS6|9628|regulator of G-protein signaling 6##NM_001204419|RGS6|9628|regulator of G-protein signaling 6##NM_001204420|RGS6|9628|regulator of G-protein signaling 6##NM_001204421|RGS6|9628|regulator of G-protein signaling 6##NM_001204422|RGS6|9628|regulator of G-protein signaling 6##NM_004296|RGS6|9628|regulator of G-protein signaling 6##AF073920|RGS6|9628|regulator of G-protein signaling 6##BC104877|RGS6|9628|regulator of G-protein signaling 6##BC113572|RGS6|9628|regulator of G-protein signaling 6##BC143699|RGS6|9628|regulator of G-protein signaling 6##AB209462|RGS6|9628|regulator of G-protein signaling 6##AK294486|RGS6|9628|regulator of G-protein signaling 6##NM_001204424|RGS6|9628|regulator of G-protein signaling 6##AK294895|RGS6|9628|regulator of G-protein signaling 6##NM_001204423|RGS6|9628|regulator of G-protein signaling 6##AY803021|DPF3|8110|D4, zinc and double PHD fingers, family 3##EU446740|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK024141|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK294425|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC026305|DPF3|8110|D4, zinc and double PHD fingers, family 3##BC060801|DPF3|8110|D4, zinc and double PHD fingers, family 3##NM_012074|DPF3|8110|D4, zinc and double PHD fingers, family 3##AK315499|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163508|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_001163509|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_015604|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181340|DCAF4|26094|DDB1 and CUL4 associated factor 4##NM_181341|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX161489|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297571|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC035901|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK300786|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK027745|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK297742|DCAF4|26094|DDB1 and CUL4 associated factor 4##BX247962|DCAF4|26094|DDB1 and CUL4 associated factor 4##BC018979|DCAF4|26094|DDB1 and CUL4 associated factor 4##AK098542|ZFYVE1|53349|zinc finger, FYVE domain containing 1##AF311602|ZFYVE1|53349|zinc finger, FYVE domain containing 1##NM_178441|ZFYVE1|53349|zinc finger, FYVE domain containing 1	0.0	0.0	
chr15	75045155	75045258	reg1015166.p1	3.806	+	TSC_hg19_v1_chr15_+_75041185 NM_000761 BC067424 BC067425 BC067426 BC067427 BC067428 BC067429	-4014	+	AK310810 AM233517 AM233518 AM233519 AM233520 AM236046 AM236047 BC023019 AY871801 K03191 AK223108 AK223113 AK313880 NM_000499	-27413	-	TSC_hg19_v1_chr15_-_74988360 BC011534 BC021271 AK056339 NM_001142443 NM_001142444 NM_025083	-56843	-	TSC_hg19_v1_chr15_+_75074420 BC106073 NM_001127190 NM_004383 AK290531	29219	+	X60114 TSC_hg19_v1_chr15_+_75074849 AK298245 AK223626 AK310136 AK312669 BC104847 BC104875 X59932	29650	+	AK300517 AK294807 AK309976 AK291819 AY358724 NM_021819	59966	+	NM_000761|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067424|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067425|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067426|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067427|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067428|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##BC067429|CYP1A2|1544|cytochrome P450, family 1, subfamily A, polypeptide 2##AK310810|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233517|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233518|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233519|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM233520|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM236046|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AM236047|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##BC023019|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AY871801|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##K03191|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AK223108|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AK223113|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##AK313880|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##NM_000499|CYP1A1|1543|cytochrome P450, family 1, subfamily A, polypeptide 1##BC011534|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##BC021271|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##AK056339|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##NM_001142443|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##NM_001142444|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##NM_025083|EDC3|80153|enhancer of mRNA decapping 3 homolog (S. cerevisiae)##BC106073|CSK|1445|c-src tyrosine kinase##NM_001127190|CSK|1445|c-src tyrosine kinase##NM_004383|CSK|1445|c-src tyrosine kinase##AK290531|CSK|1445|c-src tyrosine kinase##X60114|CSK|1445|c-src tyrosine kinase##AK298245|CSK|1445|c-src tyrosine kinase##AK223626|CSK|1445|c-src tyrosine kinase##AK310136|CSK|1445|c-src tyrosine kinase##AK312669|CSK|1445|c-src tyrosine kinase##BC104847|CSK|1445|c-src tyrosine kinase##BC104875|CSK|1445|c-src tyrosine kinase##X59932|CSK|1445|c-src tyrosine kinase##AK300517|LMAN1L|79748|lectin, mannose-binding, 1 like##AK294807|LMAN1L|79748|lectin, mannose-binding, 1 like##AK309976|LMAN1L|79748|lectin, mannose-binding, 1 like##AK291819|LMAN1L|79748|lectin, mannose-binding, 1 like##AY358724|LMAN1L|79748|lectin, mannose-binding, 1 like##NM_021819|LMAN1L|79748|lectin, mannose-binding, 1 like	0.992368	0.0	
chr20	52558451	52558555	reg1013997.p1	3.806	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-347704	-	AF041259 NM_006526	-358868	-	AK302570 NM_001193421	-756682	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	128559	-	AK315220 NM_003657	128800	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	232017	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.958385	0.0	denovo_WM_7:93:0.500	denovo_WM_7:94:0.422
chr2	222189588	222189752	reg1014913.p2	3.806	+	AY142112 NM_005070 NM_201574 AK314083 AK309025 AK289974 AK226122 BC146656	-1697316	+	TSC_hg19_v1_chr2_+_220462589 AK295609 AK300611 AK296632 AK299894 BC034051 NM_052902 AF450267	-1727081	+	M13981 NM_002191 BC039076 BC006391 TSC_hg19_v1_chr2_+_220437031 BT006954 CU675381 DQ890602 DQ893773 M13144	-1752624	+	BC036860 BC026327 L36645 BC105000 BC105002 NM_004438 AK300772 TSC_hg19_v1_chr2_-_222437025 AK225181 AK312380	247340	-	L07483 U02309 TSC_hg19_v1_chr2_-_223159109	969350	-	AK057009 NM_153038 BC109388	973242	+	AY142112|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_005070|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_201574|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK314083|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK309025|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK289974|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK226122|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##BC146656|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK295609|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK300611|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK296632|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK299894|STK11IP|114790|serine/threonine kinase 11 interacting protein##BC034051|STK11IP|114790|serine/threonine kinase 11 interacting protein##NM_052902|STK11IP|114790|serine/threonine kinase 11 interacting protein##AF450267|STK11IP|114790|serine/threonine kinase 11 interacting protein##M13981|INHA|3623|inhibin, alpha##NM_002191|INHA|3623|inhibin, alpha##BC039076|INHA|3623|inhibin, alpha##BC006391|INHA|3623|inhibin, alpha##BT006954|INHA|3623|inhibin, alpha##DQ890602|INHA|3623|inhibin, alpha##DQ893773|INHA|3623|inhibin, alpha##M13144|INHA|3623|inhibin, alpha##BC026327|EPHA4|2043|EPH receptor A4##L36645|EPHA4|2043|EPH receptor A4##BC105000|EPHA4|2043|EPH receptor A4##BC105002|EPHA4|2043|EPH receptor A4##NM_004438|EPHA4|2043|EPH receptor A4##AK300772|EPHA4|2043|EPH receptor A4##AK225181|EPHA4|2043|EPH receptor A4##AK312380|EPHA4|2043|EPH receptor A4##L07483|PAX3|5077|paired box 3##U02309|PAX3|5077|paired box 3##AK057009|CCDC140|151278|coiled-coil domain containing 140##NM_153038|CCDC140|151278|coiled-coil domain containing 140##BC109388|CCDC140|151278|coiled-coil domain containing 140	1.967507	0.0	denovo_WM_7:-49:0.268	denovo_WM_7:-50:0.223	denovo_WM_7:-68:0.229	denovo_WM_7:-69:0.273
chr4	181124608	181124777	reg1016389.p1	3.806	+	TSC_hg19_v1_chr4_-_178363633 NM_000027 NM_001171988	-2761049	-	AK303370 TSC_hg19_v1_chr4_-_178363567 BC012392 AK312982	-2761099	-	AB528385 CR541715 DQ891353 DQ894534 M64073 TSC_hg19_v1_chr4_-_178363547 X55762	-2761151	-	TSC_hg19_v1_chr4_+_183065111 AK308489	1940433	+	NM_001080477 HE578284 HE578285	2120462	+	TSC_hg19_v1_chr4_-_183838533 BC001286 BC088357 AK293135 AK313221 AK310788	2713838	-	NM_000027|AGA|175|aspartylglucosaminidase##NM_001171988|AGA|175|aspartylglucosaminidase##AK303370|AGA|175|aspartylglucosaminidase##BC012392|AGA|175|aspartylglucosaminidase##AK312982|AGA|175|aspartylglucosaminidase##CR541715|AGA|175|aspartylglucosaminidase##DQ891353|AGA|175|aspartylglucosaminidase##DQ894534|AGA|175|aspartylglucosaminidase##M64073|AGA|175|aspartylglucosaminidase##X55762|AGA|175|aspartylglucosaminidase##AK308489|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##NM_001080477|ODZ3|55714|odz, odd Oz/ten-m homolog 3 (Drosophila)##BC001286|DCTD|1635|dCMP deaminase##BC088357|DCTD|1635|dCMP deaminase##AK293135|DCTD|1635|dCMP deaminase##AK313221|DCTD|1635|dCMP deaminase##AK310788|DCTD|1635|dCMP deaminase	0.0	0.0	
chr6	2352378	2352461	reg1017476.p2	3.806	+	TSC_hg19_v1_chr6_+_2245995 AK023629	-106406	+	CR541929 CR541947 DQ892789 DQ896036 AF042377 TSC_hg19_v1_chr6_-_2245809 AK130651 AK313953 BC000117 NM_001500	-106621	-	AF040260 NM_001253846	-176195	-	NM_152554	282878	-	BX647582 NM_001012418 AK096893	398757	-	TSC_hg19_v1_chr6_+_2765561 AK315047	413161	+	CR541929|GMDS|2762|GDP-mannose 4,6-dehydratase##CR541947|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ892789|GMDS|2762|GDP-mannose 4,6-dehydratase##DQ896036|GMDS|2762|GDP-mannose 4,6-dehydratase##AF042377|GMDS|2762|GDP-mannose 4,6-dehydratase##AK130651|GMDS|2762|GDP-mannose 4,6-dehydratase##AK313953|GMDS|2762|GDP-mannose 4,6-dehydratase##BC000117|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001500|GMDS|2762|GDP-mannose 4,6-dehydratase##AF040260|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_001253846|GMDS|2762|GDP-mannose 4,6-dehydratase##NM_152554|C6orf195|154386|chromosome 6 open reading frame 195##BX647582|MYLK4|340156|myosin light chain kinase family, member 4##NM_001012418|MYLK4|340156|myosin light chain kinase family, member 4##AK096893|MYLK4|340156|myosin light chain kinase family, member 4##AK315047|WRNIP1|56897|Werner helicase interacting protein 1	0.984919	0.0	denovo_WM_7:80:0.376	denovo_WM_7:81:0.473
chrX	106942022	106942102	reg1014280.p2	3.806	+	AK307748 AK312706 AK316467 TSC_hg19_v1_chrX_+_106871744 AK297968 BC001605 X15331 AK223169 DQ895833 EU176362 AB464022 CU674782	-70264	+	NM_001204402 NM_002764 TSC_hg19_v1_chrX_+_106871719 D00860	-70367	+	BC033510 NM_001169154 NM_173494	-492201	+	BC018148 Z50781 NM_001015881	17591	-	CR533450 EU831656 EU831739 TSC_hg19_v1_chrX_-_106960193 AK311834 AY007119 AK127938	18067	-	AF153603 AF228339 AB025432 AF183393 BC072446 TSC_hg19_v1_chrX_-_106960293 AL110191 NM_004089 CR933650	18219	-	AK307748|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK312706|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK316467|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK297968|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC001605|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##X15331|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##AK223169|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##DQ895833|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##EU176362|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_001204402|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##NM_002764|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##D00860|PRPS1|5631|phosphoribosyl pyrophosphate synthetase 1##BC033510|CXorf41|139212|chromosome X open reading frame 41##NM_001169154|CXorf41|139212|chromosome X open reading frame 41##NM_173494|CXorf41|139212|chromosome X open reading frame 41##BC018148|TSC22D3|1831|TSC22 domain family, member 3##Z50781|TSC22D3|1831|TSC22 domain family, member 3##NM_001015881|TSC22D3|1831|TSC22 domain family, member 3##CR533450|TSC22D3|1831|TSC22 domain family, member 3##EU831656|TSC22D3|1831|TSC22 domain family, member 3##EU831739|TSC22D3|1831|TSC22 domain family, member 3##AK311834|TSC22D3|1831|TSC22 domain family, member 3##AY007119|TSC22D3|1831|TSC22 domain family, member 3##AK127938|TSC22D3|1831|TSC22 domain family, member 3##AF153603|TSC22D3|1831|TSC22 domain family, member 3##AF228339|TSC22D3|1831|TSC22 domain family, member 3##AB025432|TSC22D3|1831|TSC22 domain family, member 3##AF183393|TSC22D3|1831|TSC22 domain family, member 3##BC072446|TSC22D3|1831|TSC22 domain family, member 3##AL110191|TSC22D3|1831|TSC22 domain family, member 3##NM_004089|TSC22D3|1831|TSC22 domain family, member 3##CR933650|TSC22D3|1831|TSC22 domain family, member 3	0.990849	0.0	
chrX	73235388	73235456	reg1014488.p1	3.806	+	BC071776 TSC_hg19_v1_chrX_+_73164176 AK056172	-71253	+	TSC_hg19_v1_chrX_+_72783126 AB529212 AK297768 BC050300 AL832095	-452196	+	TSC_hg19_v1_chrX_+_72783043 CR936642 BC127727 BC127728 BC136691 BC136692	-452367	+	TSC_hg19_v1_chrX_-_73512419 AK057701	276983	-	TSC_hg19_v1_chrX_-_73513379 AK311345	277952	-	BC021176 NM_203303 TSC_hg19_v1_chrX_+_73524041 EU446947 EU831786 EU831864 CU676854	288640	+	BC071776|JPX|554203|JPX transcript, XIST activator (non-protein coding)##AK056172|JPX|554203|JPX transcript, XIST activator (non-protein coding)##AK297768|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC050300|CHIC1|53344|cysteine-rich hydrophobic domain 1##AL832095|CHIC1|53344|cysteine-rich hydrophobic domain 1##CR936642|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC127727|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC127728|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC136691|CHIC1|53344|cysteine-rich hydrophobic domain 1##BC136692|CHIC1|53344|cysteine-rich hydrophobic domain 1##AK057701|FTX|100302692|FTX transcript, XIST regulator (non-protein coding)##AK311345|FTX|100302692|FTX transcript, XIST regulator (non-protein coding)##BC021176|ZCCHC13|389874|zinc finger, CCHC domain containing 13##NM_203303|ZCCHC13|389874|zinc finger, CCHC domain containing 13##EU446947|ZCCHC13|389874|zinc finger, CCHC domain containing 13##EU831786|ZCCHC13|389874|zinc finger, CCHC domain containing 13##EU831864|ZCCHC13|389874|zinc finger, CCHC domain containing 13	0.0	0.901262	CTCF.p2:18:0.901
chr10	5887312	5887391	reg1004948.p2	3.805	+	TSC_hg19_v1_chr10_-_5855394 Y13286 AK297177 AK297554 AK312485 NM_001115156 NM_001494	-31916	-	BX648038 AB451295 AB451429 BT006868 CR457073 D13988 DQ890573 DQ893733 BC005145 TSC_hg19_v1_chr10_-_5855330 AK309360	-32085	-	TSC_hg19_v1_chr10_+_5772610 AB095927	-114679	+	TSC_hg19_v1_chr10_-_5931834 BC067892 NM_001009941 NM_001009943 NM_019046	44505	-	TSC_hg19_v1_chr10_+_5932205 AK095343	44848	+	TSC_hg19_v1_chr10_+_5932214 NM_178150	44860	+	Y13286|GDI2|2665|GDP dissociation inhibitor 2##AK297177|GDI2|2665|GDP dissociation inhibitor 2##AK297554|GDI2|2665|GDP dissociation inhibitor 2##AK312485|GDI2|2665|GDP dissociation inhibitor 2##NM_001115156|GDI2|2665|GDP dissociation inhibitor 2##NM_001494|GDI2|2665|GDP dissociation inhibitor 2##BX648038|GDI2|2665|GDP dissociation inhibitor 2##AB451295|GDI2|2665|GDP dissociation inhibitor 2##AB451429|GDI2|2665|GDP dissociation inhibitor 2##BT006868|GDI2|2665|GDP dissociation inhibitor 2##CR457073|GDI2|2665|GDP dissociation inhibitor 2##D13988|GDI2|2665|GDP dissociation inhibitor 2##DQ890573|GDI2|2665|GDP dissociation inhibitor 2##DQ893733|GDI2|2665|GDP dissociation inhibitor 2##BC005145|GDI2|2665|GDP dissociation inhibitor 2##AK309360|GDI2|2665|GDP dissociation inhibitor 2##AB095927|FAM208B|54906|family with sequence similarity 208, member B##BC067892|ANKRD16|54522|ankyrin repeat domain 16##NM_001009941|ANKRD16|54522|ankyrin repeat domain 16##NM_001009943|ANKRD16|54522|ankyrin repeat domain 16##NM_019046|ANKRD16|54522|ankyrin repeat domain 16##AK095343|FBXO18|84893|F-box protein, helicase, 18##NM_178150|FBXO18|84893|F-box protein, helicase, 18	0.998702	0.0	
chr14	93578021	93578121	reg1017279.p2	3.805	+	TSC_hg19_v1_chr14_+_93389494 AK313757 AK223381 BC006459 BX248263 J03483 BC001059 J03915 DQ891820 DQ895007 CU674536 BT006869	-188474	+	NM_001275 TSC_hg19_v1_chr14_+_93389444	-188627	+	TSC_hg19_v1_chr14_+_93260649 NM_005113 BC023021 AK303789 AK293077 BC010134 AF085199	-317385	+	CU678540 DQ891434 DQ894609 AF279372 TSC_hg19_v1_chr14_-_93581625 BC037305 AK293515	3520	-	TSC_hg19_v1_chr14_-_93582271 BC018192 BC003622 BC007428 U51336 NM_001142593 NM_001142594 NM_014216	4143	-	BC015044 TSC_hg19_v1_chr14_-_93651193 AK024029	73129	-	AK313757|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##AK223381|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC006459|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BX248263|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03483|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BC001059|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##J03915|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ891820|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##DQ895007|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##BT006869|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_001275|CHGA|1113|chromogranin A (parathyroid secretory protein 1)##NM_005113|GOLGA5|9950|golgin A5##BC023021|GOLGA5|9950|golgin A5##AK303789|GOLGA5|9950|golgin A5##AK293077|GOLGA5|9950|golgin A5##BC010134|GOLGA5|9950|golgin A5##AF085199|GOLGA5|9950|golgin A5##DQ891434|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##DQ894609|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AF279372|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC037305|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##AK293515|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC018192|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC003622|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC007428|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##U51336|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142593|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_001142594|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##NM_014216|ITPK1|3705|inositol-tetrakisphosphate 1-kinase##BC015044|MOAP1|64112|modulator of apoptosis 1##AK024029|MOAP1|64112|modulator of apoptosis 1	0.99897	0.0	denovo_WM_7:-5:0.314	denovo_WM_7:-6:0.314	denovo_WM_7:-7:0.314
chr15	85530595	85530687	reg1018693.p1	3.805	+	BC075822 TSC_hg19_v1_chr15_+_85525333	-5315	+	NM_002605 NM_173454 AF388183 AF388184 AF388185 AF388186 AF388187 AF332653 TSC_hg19_v1_chr15_+_85525261 BC036190	-5404	+	TSC_hg19_v1_chr15_+_85523735 BC060762 AK074280 NM_001243137	-6939	+	AL109778 TSC_hg19_v1_chr15_+_85666316 AL109687	135677	+	TSC_hg19_v1_chr15_+_85923835 AK125331 BC050312 NM_006738 NM_007200 AF406992	393250	+	AF127481 NM_144767	689626	+	BC075822|PDE8A|5151|phosphodiesterase 8A##NM_002605|PDE8A|5151|phosphodiesterase 8A##NM_173454|PDE8A|5151|phosphodiesterase 8A##AF388183|PDE8A|5151|phosphodiesterase 8A##AF388184|PDE8A|5151|phosphodiesterase 8A##AF388185|PDE8A|5151|phosphodiesterase 8A##AF388186|PDE8A|5151|phosphodiesterase 8A##AF388187|PDE8A|5151|phosphodiesterase 8A##AF332653|PDE8A|5151|phosphodiesterase 8A##BC036190|PDE8A|5151|phosphodiesterase 8A##BC060762|PDE8A|5151|phosphodiesterase 8A##AK074280|PDE8A|5151|phosphodiesterase 8A##NM_001243137|PDE8A|5151|phosphodiesterase 8A##AL109778|PDE8A|5151|phosphodiesterase 8A##AL109687|PDE8A|5151|phosphodiesterase 8A##AK125331|AKAP13|11214|A kinase (PRKA) anchor protein 13##BC050312|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_006738|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_007200|AKAP13|11214|A kinase (PRKA) anchor protein 13##AF406992|AKAP13|11214|A kinase (PRKA) anchor protein 13##NM_144767|AKAP13|11214|A kinase (PRKA) anchor protein 13	0.999148	0.0	
chr16	85279368	85279497	reg1013645.p2	3.805	+	BC093665 BC111944 AK126284 NM_198491	-133378	-	TSC_hg19_v1_chr16_+_85061400 AK299892 BC030280 NM_014732	-218062	+	TSC_hg19_v1_chr16_-_85045119 BC018772 AK000286 NM_001145548 NM_017740	-234303	-	TSC_hg19_v1_chr16_+_85645014 BC037556 NM_001134473	365589	+	NM_014615 TSC_hg19_v1_chr16_+_85646927 D80004	367521	+	CR457186 CU678432 CU679645 AK091519 AK001275 BC022839 AK223123 BC062444 TSC_hg19_v1_chr16_-_85722561 BC010164 AF125098 AF151880 AF201939	443110	-	BC093665|FAM92B|339145|family with sequence similarity 92, member B##BC111944|FAM92B|339145|family with sequence similarity 92, member B##AK126284|FAM92B|339145|family with sequence similarity 92, member B##NM_198491|FAM92B|339145|family with sequence similarity 92, member B##AK299892|KIAA0513|9764|KIAA0513##BC030280|KIAA0513|9764|KIAA0513##NM_014732|KIAA0513|9764|KIAA0513##BC018772|ZDHHC7|55625|zinc finger, DHHC-type containing 7##AK000286|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_001145548|ZDHHC7|55625|zinc finger, DHHC-type containing 7##NM_017740|ZDHHC7|55625|zinc finger, DHHC-type containing 7##BC037556|KIAA0182|23199|KIAA0182##NM_001134473|KIAA0182|23199|KIAA0182##NM_014615|KIAA0182|23199|KIAA0182##D80004|KIAA0182|23199|KIAA0182##CR457186|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK091519|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK001275|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC022839|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AK223123|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC062444|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##BC010164|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF125098|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF151880|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)##AF201939|GINS2|51659|GINS complex subunit 2 (Psf2 homolog)	0.0	0.928645	CTCF.p2:-13:0.929
chr20	40208120	40208221	reg1011333.p1	3.805	+	AB089149 NM_052846	-212673	-	TSC_hg19_v1_chr20_+_39969434 BX647082 NM_022896 BC140806 BC144598	-238655	+	TSC_hg19_v1_chr20_-_39946149 AB007855	-261955	-	TSC_hg19_v1_chr20_-_40247013 BC039860 BC040016 AK296955 BC012516 AY034072 NM_032221	38891	-	AB006621 BC153300 TSC_hg19_v1_chr20_-_41818547 AF043644 NM_007050 NM_133170	1610340	-	TSC_hg19_v1_chr20_+_42086514 NM_006275	1878322	+	AB089149|EMILIN3|90187|elastin microfibril interfacer 3##NM_052846|EMILIN3|90187|elastin microfibril interfacer 3##BX647082|LPIN3|64900|lipin 3##NM_022896|LPIN3|64900|lipin 3##BC140806|LPIN3|64900|lipin 3##BC144598|LPIN3|64900|lipin 3##AB007855|ZHX3|23051|zinc fingers and homeoboxes 3##BC039860|CHD6|84181|chromodomain helicase DNA binding protein 6##BC040016|CHD6|84181|chromodomain helicase DNA binding protein 6##AK296955|CHD6|84181|chromodomain helicase DNA binding protein 6##BC012516|CHD6|84181|chromodomain helicase DNA binding protein 6##AY034072|CHD6|84181|chromodomain helicase DNA binding protein 6##NM_032221|CHD6|84181|chromodomain helicase DNA binding protein 6##AB006621|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##BC153300|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##AF043644|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_007050|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_133170|PTPRT|11122|protein tyrosine phosphatase, receptor type, T##NM_006275|SRSF6|6431|serine/arginine-rich splicing factor 6	0.9938	0.0	denovo_WM_7:-83:0.248	denovo_WM_7:-84:0.248	denovo_WM_7:-85:0.248	denovo_WM_7:-86:0.248
chr1	156571693	156571859	reg1011767.p2	3.804	+	AB528795 BC032436 TSC_hg19_v1_chr1_-_156571275 BC040147 AK125763 BC056904 AK000256 AK293026 AK301232 NM_015590 NM_182679	-519	-	TSC_hg19_v1_chr1_+_156561594 AK316083	-10174	+	TSC_hg19_v1_chr1_+_156561567 AK294835 AK298222 BC056917 NM_144772 AJ315849 BC100931 BC100932 BC100933 BC100934	-10221	+	AB049054 NM_021817 AK294131 AK310758 AK308805 AK090712 AK308980 AK293797 BC029864	17410	+	TSC_hg19_v1_chr1_+_156611723 AY358372 NM_021948 NM_198427	39953	+	TSC_hg19_v1_chr1_+_156611908 AK289759 BC029348 AY007241 BC022938 BC027971 BC035457 BC009117 BC010571 AF228710 AF229053	40178	+	BC032436|GPATCH4|54865|G patch domain containing 4##BC040147|GPATCH4|54865|G patch domain containing 4##AK125763|GPATCH4|54865|G patch domain containing 4##BC056904|GPATCH4|54865|G patch domain containing 4##AK000256|GPATCH4|54865|G patch domain containing 4##AK293026|GPATCH4|54865|G patch domain containing 4##AK301232|GPATCH4|54865|G patch domain containing 4##NM_015590|GPATCH4|54865|G patch domain containing 4##NM_182679|GPATCH4|54865|G patch domain containing 4##AK294835|APOA1BP|128240|apolipoprotein A-I binding protein##AK298222|APOA1BP|128240|apolipoprotein A-I binding protein##BC056917|APOA1BP|128240|apolipoprotein A-I binding protein##NM_144772|APOA1BP|128240|apolipoprotein A-I binding protein##AJ315849|APOA1BP|128240|apolipoprotein A-I binding protein##BC100931|APOA1BP|128240|apolipoprotein A-I binding protein##BC100932|APOA1BP|128240|apolipoprotein A-I binding protein##BC100933|APOA1BP|128240|apolipoprotein A-I binding protein##BC100934|APOA1BP|128240|apolipoprotein A-I binding protein##AB049054|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##NM_021817|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK294131|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK310758|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK308805|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK090712|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK308980|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AK293797|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##BC029864|HAPLN2|60484|hyaluronan and proteoglycan link protein 2##AY358372|BCAN|63827|brevican##NM_021948|BCAN|63827|brevican##NM_198427|BCAN|63827|brevican##AK289759|BCAN|63827|brevican##BC029348|BCAN|63827|brevican##AY007241|BCAN|63827|brevican##BC022938|BCAN|63827|brevican##BC027971|BCAN|63827|brevican##BC035457|BCAN|63827|brevican##BC009117|BCAN|63827|brevican##BC010571|BCAN|63827|brevican##AF228710|BCAN|63827|brevican##AF229053|BCAN|63827|brevican	0.99412	0.0	denovo_WM_7:-39:0.566	denovo_WM_7:-40:0.404
chr11	68245996	68246115	reg1016903.p1	3.804	+	TSC_hg19_v1_chr11_+_68228219 NM_001164160 NM_001164161 NM_001164162 NM_001164163 NM_001164164 NM_018312 BC070121 AK298180 AK303315 AK315136 CR936718 CR749815 CR933658 AB046778	-17846	+	AF088027 TSC_hg19_v1_chr11_+_68115450	-130619	+	TSC_hg19_v1_chr11_+_68080058 AB017498 NM_002335 AF077820 AF064548 BC150595 BC098397	-165966	+	AK001920 TSC_hg19_v1_chr11_+_68367929	121821	+	TSC_hg19_v1_chr11_+_68451978 NM_015973	205928	+	TSC_hg19_v1_chr11_+_68452011 BC030241	205965	+	NM_001164160|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164161|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164162|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164163|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_001164164|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_018312|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##BC070121|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK298180|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK303315|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AK315136|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR936718|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR749815|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##CR933658|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AB046778|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##AF088027|LRP5|4041|low density lipoprotein receptor-related protein 5##AB017498|LRP5|4041|low density lipoprotein receptor-related protein 5##NM_002335|LRP5|4041|low density lipoprotein receptor-related protein 5##AF077820|LRP5|4041|low density lipoprotein receptor-related protein 5##AF064548|LRP5|4041|low density lipoprotein receptor-related protein 5##BC150595|LRP5|4041|low density lipoprotein receptor-related protein 5##BC098397|LRP5|4041|low density lipoprotein receptor-related protein 5##AK001920|PPP6R3|55291|protein phosphatase 6, regulatory subunit 3##NM_015973|GAL|51083|galanin prepropeptide##BC030241|GAL|51083|galanin prepropeptide	0.998596	0.0	
chr13	61218100	61218202	reg1019393.p2	3.804	+	EU643838 NM_001146070 TSC_hg19_v1_chr13_+_60971524	-246672	+	BX537910 NM_001146071 NM_030794	-247561	+	TSC_hg19_v1_chr13_-_60738096 NM_001042517	-480050	-	AB527405 AK314607 BC027907 AF169693 AK094680 TSC_hg19_v1_chr13_-_61989297	771102	-	AK289924 NM_022843	771503	-	TSC_hg19_v1_chr13_-_67804469 BX537422 AK054661 NM_020403 NM_203487 BC150296	6586353	-	EU643838|TDRD3|81550|tudor domain containing 3##NM_001146070|TDRD3|81550|tudor domain containing 3##BX537910|TDRD3|81550|tudor domain containing 3##NM_001146071|TDRD3|81550|tudor domain containing 3##NM_030794|TDRD3|81550|tudor domain containing 3##NM_001042517|DIAPH3|81624|diaphanous homolog 3 (Drosophila)##AK314607|PCDH20|64881|protocadherin 20##BC027907|PCDH20|64881|protocadherin 20##AF169693|PCDH20|64881|protocadherin 20##AK094680|PCDH20|64881|protocadherin 20##AK289924|PCDH20|64881|protocadherin 20##NM_022843|PCDH20|64881|protocadherin 20##BX537422|PCDH9|5101|protocadherin 9##AK054661|PCDH9|5101|protocadherin 9##NM_020403|PCDH9|5101|protocadherin 9##NM_203487|PCDH9|5101|protocadherin 9##BC150296|PCDH9|5101|protocadherin 9	0.0	0.0	
chr19	13263936	13264044	reg1014631.p1	3.804	+	TSC_hg19_v1_chr19_+_13261272 BC072432 NM_004907	-2698	+	TSC_hg19_v1_chr19_-_13261100 BC017237	-2851	-	AF035531 CR457110 NM_003765 CU677875 BC095459 TSC_hg19_v1_chr19_-_13261045 AY778966	-2957	-	TSC_hg19_v1_chr19_+_13264358 BC003625 M62831 AB464589 DQ892292 DQ895492 BT019466 CR450352	190	+	AB035727 FJ040507 TSC_hg19_v1_chr19_-_13617280 AB035726 U79666 AF004883 AF004884 NM_000068 NM_001127221 NM_001127222 NM_001174080 NM_023035 X99897	353186	-	TSC_hg19_v1_chr19_+_13842573 AK293927 BC047520	578589	+	BC072432|IER2|9592|immediate early response 2##NM_004907|IER2|9592|immediate early response 2##BC017237|STX10|8677|syntaxin 10##AF035531|STX10|8677|syntaxin 10##CR457110|STX10|8677|syntaxin 10##NM_003765|STX10|8677|syntaxin 10##BC095459|STX10|8677|syntaxin 10##AY778966|STX10|8677|syntaxin 10##BC003625|IER2|9592|immediate early response 2##M62831|IER2|9592|immediate early response 2##DQ892292|IER2|9592|immediate early response 2##DQ895492|IER2|9592|immediate early response 2##BT019466|IER2|9592|immediate early response 2##CR450352|IER2|9592|immediate early response 2##AB035727|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##FJ040507|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AB035726|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##U79666|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004883|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AF004884|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_000068|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127221|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001127222|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_001174080|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##NM_023035|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##X99897|CACNA1A|773|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit##AK293927|CCDC130|81576|coiled-coil domain containing 130	0.0	0.0	
chr19	2610807	2610910	reg1013118.p2	3.804	+	NM_015675 TSC_hg19_v1_chr19_+_2476124 AK293087 AF087853 BC024654 AF078077 BC113466 BC117469 AF090950 HQ258730 AY615270 AY615271 AB528673	-134620	+	TSC_hg19_v1_chr19_-_2456958 NM_032737	-153898	-	TSC_hg19_v1_chr19_-_2456941 BC006551	-153922	-	BC053630 TSC_hg19_v1_chr19_-_2702693 AK311750 BC014466	91837	-	TSC_hg19_v1_chr19_-_2702746 NM_052847	91884	-	AK124445 TSC_hg19_v1_chr19_-_2717420	106491	-	NM_015675|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AK293087|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF087853|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC024654|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF078077|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC113466|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##BC117469|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AF090950|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##HQ258730|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615270|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##AY615271|GADD45B|4616|growth arrest and DNA-damage-inducible, beta##NM_032737|LMNB2|84823|lamin B2##BC006551|LMNB2|84823|lamin B2##BC053630|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK311750|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##BC014466|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##NM_052847|GNG7|2788|guanine nucleotide binding protein (G protein), gamma 7##AK124445|DIRAS1|148252|DIRAS family, GTP-binding RAS-like 1	0.0	0.0	
chr3	170028080	170028177	reg1017555.p1	3.804	+	TSC_hg19_v1_chr3_+_169940250 L33881 AK315342 AB590674 AB451443	-87763	+	TSC_hg19_v1_chr3_+_169940223 BC022016	-87899	+	TSC_hg19_v1_chr3_+_169940214 NM_002740 L18964	-87911	+	TSC_hg19_v1_chr3_+_170075455 NM_001145098 NM_005414	47341	+	TSC_hg19_v1_chr3_+_170075508 BC059386	47378	+	AK300053 TSC_hg19_v1_chr3_+_170075522 BC053554	47428	+	L33881|PRKCI|5584|protein kinase C, iota##AK315342|PRKCI|5584|protein kinase C, iota##AB451443|PRKCI|5584|protein kinase C, iota##BC022016|PRKCI|5584|protein kinase C, iota##NM_002740|PRKCI|5584|protein kinase C, iota##L18964|PRKCI|5584|protein kinase C, iota##NM_001145098|SKIL|6498|SKI-like oncogene##NM_005414|SKIL|6498|SKI-like oncogene##BC059386|SKIL|6498|SKI-like oncogene##AK300053|SKIL|6498|SKI-like oncogene	0.0	0.725264	CTCF.p2:-17:0.705
chr3	27761418	27761597	reg1014964.p1	3.804	+	TSC_hg19_v1_chr3_-_27525893 AK309734	-235577	-	TSC_hg19_v1_chr3_-_27525833 EU499349 EU934246 EU934247 EU934248 EU934249 EU934250 FJ178574 FJ178575 FJ178576 GU354307 GU354308 GU354309 GU354310	-235682	-	AF047033 AF089726 NM_003615	-263263	-	AB031038 BC131712 NM_005442 AB463608 BC037568	2286	-	AK299499 TSC_hg19_v1_chr3_-_27764203 AK299695 AK297389 AK297461 AK316166	2694	-	TSC_hg19_v1_chr3_+_28283114 CR749370 BX648671 BC052644 NM_182523	521591	+	AK309734|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU499349|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934246|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934247|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934248|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934249|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##EU934250|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178574|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178575|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##FJ178576|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354307|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354308|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354309|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##GU354310|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF047033|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AF089726|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##NM_003615|SLC4A7|9497|solute carrier family 4, sodium bicarbonate cotransporter, member 7##AB031038|EOMES|8320|eomesodermin##BC131712|EOMES|8320|eomesodermin##NM_005442|EOMES|8320|eomesodermin##BC037568|EOMES|8320|eomesodermin##AK299499|EOMES|8320|eomesodermin##AK299695|EOMES|8320|eomesodermin##AK297389|EOMES|8320|eomesodermin##AK297461|EOMES|8320|eomesodermin##AK316166|EOMES|8320|eomesodermin##CR749370|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BX648671|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##BC052644|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)##NM_182523|CMC1|152100|COX assembly mitochondrial protein homolog (S. cerevisiae)	0.0	0.0	
chr3	32554055	32554159	reg1015567.p1	3.804	+	BC002797 TSC_hg19_v1_chr3_-_32544365 NM_017801	-9727	-	TSC_hg19_v1_chr3_-_32544335 AK000403	-9774	-	CR457231 TSC_hg19_v1_chr3_-_32544290	-9835	-	BX649189 TSC_hg19_v1_chr3_-_32612288 AK222573 AK222653 BC131620 AF078849 AK074348 AK293253 NM_016141	58167	-	TSC_hg19_v1_chr3_+_32726700 AK023227 AK022952 NM_015442 AK309670 BC006382 BC002931 BC002928 AK297085 AK298693 CU678296 CU678298 DQ892895 DQ896143 EU831494 EU831581	172698	+	DQ232881 NM_001039111	305402	+	BC002797|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##NM_017801|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##AK000403|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##CR457231|CMTM6|54918|CKLF-like MARVEL transmembrane domain containing 6##BX649189|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK222573|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK222653|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##BC131620|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AF078849|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK074348|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK293253|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##NM_016141|DYNC1LI1|51143|dynein, cytoplasmic 1, light intermediate chain 1##AK023227|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK022952|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##NM_015442|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK309670|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC006382|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002931|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##BC002928|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK297085|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##AK298693|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ892895|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ896143|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831494|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##EU831581|CNOT10|25904|CCR4-NOT transcription complex, subunit 10##DQ232881|TRIM71|131405|tripartite motif containing 71##NM_001039111|TRIM71|131405|tripartite motif containing 71	0.0	0.0	
chr4	151926575	151926694	reg1013508.p1	3.804	+	TSC_hg19_v1_chr4_-_151773972 BC172218	-152640	-	TSC_hg19_v1_chr4_-_151770612 AB208838	-155985	-	NM_006439	-423558	+	TSC_hg19_v1_chr4_-_151936437 AF467287 NM_001199282 BC064834	9784	-	AF216648 NM_006726	10014	-	TSC_hg19_v1_chr4_-_151936880 AK098039	10256	-	AB208838|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006439|MAB21L2|10586|mab-21-like 2 (C. elegans)##AF467287|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_001199282|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##BC064834|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AF216648|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##NM_006726|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing##AK098039|LRBA|987|LPS-responsive vesicle trafficking, beach and anchor containing	2.01518	0.0	denovo_WM_7:82:0.936
chr5	131029674	131029782	reg1015956.p1	3.804	+	TSC_hg19_v1_chr5_-_130970911 BC142964 AF478567 NM_001164386 NM_001164387 NM_001164388 NM_001164389 NM_001164390 NM_016340	-58798	-	BC133703 TSC_hg19_v1_chr5_-_130970893 AF394782 AK302640	-58850	-	BC140820 BC144627 TSC_hg19_v1_chr5_-_130970834	-58909	-	CR936723 TSC_hg19_v1_chr5_-_131132683 DQ145719 BC020539 AF117947	102934	-	TSC_hg19_v1_chr5_-_131132694 BC001956	102971	-	AK292473 TSC_hg19_v1_chr5_-_131132711	102983	-	BC142964|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF478567|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164386|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164387|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164388|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164389|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_001164390|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##NM_016340|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC133703|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AF394782|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##AK302640|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC140820|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##BC144627|RAPGEF6|51735|Rap guanine nucleotide exchange factor (GEF) 6##CR936723|FNIP1|96459|folliculin interacting protein 1##DQ145719|FNIP1|96459|folliculin interacting protein 1##BC001956|FNIP1|96459|folliculin interacting protein 1##AK292473|FNIP1|96459|folliculin interacting protein 1	0.0	0.0	
chr5	89789380	89789470	reg1015732.p1	3.804	+	NM_006467 AK295434 U93868	-18723	+	TSC_hg19_v1_chr5_-_89770480 BC038230 NM_203406	-18847	-	CU691546 AK289778 AK096942 TSC_hg19_v1_chr5_-_89770234 AK128603	-19243	-	BC136740 BC136741 TSC_hg19_v1_chr5_-_89825381 BX537972 CR933624 AL832721 AK291478 BC058027 NM_198273	35941	-	TSC_hg19_v1_chr5_+_89854616 AF435925 NM_032119	65189	+	AK091866 TSC_hg19_v1_chr5_-_90610220	820820	-	NM_006467|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##AK295434|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##U93868|POLR3G|10622|polymerase (RNA) III (DNA directed) polypeptide G (32kD)##BC038230|MBLAC2|153364|metallo-beta-lactamase domain containing 2##NM_203406|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK289778|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK096942|MBLAC2|153364|metallo-beta-lactamase domain containing 2##AK128603|MBLAC2|153364|metallo-beta-lactamase domain containing 2##BC136740|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC136741|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BX537972|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##CR933624|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AL832721|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AK291478|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##BC058027|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##NM_198273|LYSMD3|116068|LysM, putative peptidoglycan-binding, domain containing 3##AF435925|GPR98|84059|G protein-coupled receptor 98##NM_032119|GPR98|84059|G protein-coupled receptor 98##AK091866|LOC100505994|100505994|uncharacterized LOC100505994	2.194895	0.0	denovo_WM_7:76:0.491	denovo_WM_7:77:0.295	denovo_WM_7:91:0.201	denovo_WM_7:92:0.298	denovo_WM_7:93:0.297
chr7	88632391	88632514	reg1007201.p2	3.804	+	BC028365 NM_152706	-207422	-	BC140826 BC140829 AK056672 AY295769 NM_181646	-243736	+	BC020600 AF423422 AF423423 AK026806 AK307644 TSC_hg19_v1_chr7_-_87936207 NM_001205315 NM_001205316 NM_024636	-696238	-	NM_012449 TSC_hg19_v1_chr7_+_89783782 AK308452 BC011802	1151285	+	AK304076 TSC_hg19_v1_chr7_+_89783791 AF186249	1151360	+	AF455138 NM_001244944 NM_001244945 NM_152999 AK092666 AX747660 TSC_hg19_v1_chr7_+_89841171 AY008443 AY008444 AY008445 NM_001040665 NM_001244946 AK315043	1208663	+	BC028365|C7orf62|219557|chromosome 7 open reading frame 62##NM_152706|C7orf62|219557|chromosome 7 open reading frame 62##BC140826|ZNF804B|219578|zinc finger protein 804B##BC140829|ZNF804B|219578|zinc finger protein 804B##AK056672|ZNF804B|219578|zinc finger protein 804B##AY295769|ZNF804B|219578|zinc finger protein 804B##NM_181646|ZNF804B|219578|zinc finger protein 804B##BC020600|STEAP4|79689|STEAP family member 4##AF423422|STEAP4|79689|STEAP family member 4##AF423423|STEAP4|79689|STEAP family member 4##AK026806|STEAP4|79689|STEAP family member 4##AK307644|STEAP4|79689|STEAP family member 4##NM_001205315|STEAP4|79689|STEAP family member 4##NM_001205316|STEAP4|79689|STEAP family member 4##NM_024636|STEAP4|79689|STEAP family member 4##NM_012449|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK308452|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##BC011802|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AK304076|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF186249|STEAP1|26872|six transmembrane epithelial antigen of the prostate 1##AF455138|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244944|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244945|STEAP2|261729|STEAP family member 2, metalloreductase##NM_152999|STEAP2|261729|STEAP family member 2, metalloreductase##AK092666|STEAP2|261729|STEAP family member 2, metalloreductase##AY008443|STEAP2|261729|STEAP family member 2, metalloreductase##AY008444|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001040665|STEAP2|261729|STEAP family member 2, metalloreductase##NM_001244946|STEAP2|261729|STEAP family member 2, metalloreductase##AK315043|STEAP2|261729|STEAP family member 2, metalloreductase	0.997386	0.0	
chrX	987155	987288	reg1013130.p1	3.804	+	NM_000451 NM_006883 U89331	-402143	+	AK293506 NM_013239	-639532	-	NM_018390 BC064136 BC005028 BC000888 BC032072	-789114	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	344363	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	400493	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	414362	+	NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	0.0	0.0	
chr1	202134003	202134159	reg1012580.p1	3.803	+	TSC_hg19_v1_chr1_-_202130715 AK127214 AK302869 NM_001199797 NM_002832	-3380	-	TSC_hg19_v1_chr1_-_202129731 AK301051 AK301757 AK311661 AK293186 AK301980	-4337	-	M64322 TSC_hg19_v1_chr1_-_202129719 AK225920 D11327	-4367	-	NM_001017403 AB049405	29093	+	AY358119 BC038795 NM_021636 BC047905	38811	+	AF190501 NM_001017404	49201	+	AK127214|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK302869|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##NM_001199797|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##NM_002832|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK301051|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK301757|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK311661|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK293186|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK301980|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##M64322|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##AK225920|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##D11327|PTPN7|5778|protein tyrosine phosphatase, non-receptor type 7##NM_001017403|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AB049405|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AY358119|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC038795|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_021636|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##BC047905|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##AF190501|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6##NM_001017404|LGR6|59352|leucine-rich repeat containing G protein-coupled receptor 6	0.822302	0.0	denovo_WM_7:71:0.238	denovo_WM_7:73:0.536
chr14	54079447	54079541	reg1011648.p1	3.803	+	TSC_hg19_v1_chr14_-_53620035 NM_001160147 NM_001160148 NM_030637	-459444	-	TSC_hg19_v1_chr14_-_53619974 DQ315474 GU376468 BC030703	-459526	-	TSC_hg19_v1_chr14_-_53619887 AK125372	-459621	-	NM_130851	341775	-	TSC_hg19_v1_chr14_-_54423561 BC020546 M22490 BX161438 NM_001202 NM_130850	344039	-	AK098653 NM_001130851 NM_005192 TSC_hg19_v1_chr14_+_54863687 BC064965 L25876 L27711 BC103633 AK293265 EF560750 U02681	784227	+	NM_001160147|DDHD1|80821|DDHD domain containing 1##NM_001160148|DDHD1|80821|DDHD domain containing 1##NM_030637|DDHD1|80821|DDHD domain containing 1##DQ315474|DDHD1|80821|DDHD domain containing 1##GU376468|DDHD1|80821|DDHD domain containing 1##BC030703|DDHD1|80821|DDHD domain containing 1##AK125372|DDHD1|80821|DDHD domain containing 1##NM_130851|BMP4|652|bone morphogenetic protein 4##BC020546|BMP4|652|bone morphogenetic protein 4##M22490|BMP4|652|bone morphogenetic protein 4##BX161438|BMP4|652|bone morphogenetic protein 4##NM_001202|BMP4|652|bone morphogenetic protein 4##NM_130850|BMP4|652|bone morphogenetic protein 4##AK098653|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_001130851|CDKN3|1033|cyclin-dependent kinase inhibitor 3##NM_005192|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC064965|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L25876|CDKN3|1033|cyclin-dependent kinase inhibitor 3##L27711|CDKN3|1033|cyclin-dependent kinase inhibitor 3##BC103633|CDKN3|1033|cyclin-dependent kinase inhibitor 3##AK293265|CDKN3|1033|cyclin-dependent kinase inhibitor 3##EF560750|CDKN3|1033|cyclin-dependent kinase inhibitor 3##U02681|CDKN3|1033|cyclin-dependent kinase inhibitor 3	0.33939	0.0	
chr17	27774925	27775000	reg1010792.p1	3.803	+	NM_020791 NM_025142 BC133039 BC144067	-57017	+	TSC_hg19_v1_chr17_-_27621167 AK293075 NM_020772	-153797	-	AB385448 AJ493465 BC129989 BC129990 BC108307 AK297732 TSC_hg19_v1_chr17_-_27621134 AB037742 AY232289	-153852	-	TSC_hg19_v1_chr17_-_27893539 AK056717	118582	-	TSC_hg19_v1_chr17_-_27894056 BC012476 NM_198147 AY358212	119062	-	TSC_hg19_v1_chr17_+_27895730 AB110209 AK075341	120745	+	NM_020791|TAOK1|57551|TAO kinase 1##NM_025142|TAOK1|57551|TAO kinase 1##BC133039|TAOK1|57551|TAO kinase 1##BC144067|TAOK1|57551|TAO kinase 1##AK293075|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##NM_020772|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AJ493465|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129989|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC129990|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##BC108307|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK297732|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AB037742|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AY232289|NUFIP2|57532|nuclear fragile X mental retardation protein interacting protein 2##AK056717|ABHD15|116236|abhydrolase domain containing 15##BC012476|ABHD15|116236|abhydrolase domain containing 15##NM_198147|ABHD15|116236|abhydrolase domain containing 15##AY358212|ABHD15|116236|abhydrolase domain containing 15##AB110209|TP53I13|90313|tumor protein p53 inducible protein 13##AK075341|TP53I13|90313|tumor protein p53 inducible protein 13	1.872226	0.0	denovo_WM_7:87:0.364
chr17	40190609	40190728	reg1016352.p1	3.803	+	NM_001242704	-625	-	TSC_hg19_v1_chr17_+_40172124 AK027265 AK297975 AK054571 BC007316 BC007450	-18522	+	NM_001144927 NM_001144928 NM_001144929 NM_017595 TSC_hg19_v1_chr17_+_40172107	-18570	+	BC014949 AK296840 AK300900 AK021416 AK225549 NM_024119	74050	-	TSC_hg19_v1_chr17_-_40273386 AB527835 AF029777 BC032743 BC105977 BC039907 NM_021078	82681	-	NM_033194 BC093991 BC093993 AK130947	84133	+	NM_001242704|ZNF385C|201181|zinc finger protein 385C##AK027265|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##AK297975|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##AK054571|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC007316|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC007450|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144927|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144928|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144929|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_017595|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC014949|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK296840|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK300900|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK021416|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK225549|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##NM_024119|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AF029777|KAT2A|2648|K(lysine) acetyltransferase 2A##BC032743|KAT2A|2648|K(lysine) acetyltransferase 2A##BC105977|KAT2A|2648|K(lysine) acetyltransferase 2A##BC039907|KAT2A|2648|K(lysine) acetyltransferase 2A##NM_021078|KAT2A|2648|K(lysine) acetyltransferase 2A##NM_033194|HSPB9|94086|heat shock protein, alpha-crystallin-related, B9##BC093991|HSPB9|94086|heat shock protein, alpha-crystallin-related, B9##BC093993|HSPB9|94086|heat shock protein, alpha-crystallin-related, B9##AK130947|HSPB9|94086|heat shock protein, alpha-crystallin-related, B9	0.989113	0.0	denovo_WM_7:-34:0.912
chr18	39768123	39768229	reg1015564.p1	3.803	+	TSC_hg19_v1_chr18_+_39535244 BC033004 AK298517 BC010388 AK308364 BC053651 AB463170 DQ890552 DQ893712	-232943	+	TSC_hg19_v1_chr18_+_39535200 NM_002647 Z46973	-232977	+	TSC_hg19_v1_chr18_-_37380279 AK090603	-2387908	-	AB590857 AF493922 AY563951 AK313823 BC018060 U71204 U78164 U78166 NM_002930 Y07565	927393	-	AB385452 EU176218 AK299652 AF299075 AK299593 AK297275 BC036538 AB037763 AK291154 AK293791 AK297379 AK311335 AK311469 NM_020783	1089253	-	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	2491938	+	BC033004|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK298517|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC010388|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK308364|PIK3C3|5289|phosphoinositide-3-kinase, class 3##BC053651|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ890552|PIK3C3|5289|phosphoinositide-3-kinase, class 3##DQ893712|PIK3C3|5289|phosphoinositide-3-kinase, class 3##NM_002647|PIK3C3|5289|phosphoinositide-3-kinase, class 3##Z46973|PIK3C3|5289|phosphoinositide-3-kinase, class 3##AK090603|LOC647946|647946|uncharacterized LOC647946##AF493922|RIT2|6014|Ras-like without CAAX 2##AY563951|RIT2|6014|Ras-like without CAAX 2##AK313823|RIT2|6014|Ras-like without CAAX 2##BC018060|RIT2|6014|Ras-like without CAAX 2##U71204|RIT2|6014|Ras-like without CAAX 2##U78164|RIT2|6014|Ras-like without CAAX 2##U78166|RIT2|6014|Ras-like without CAAX 2##NM_002930|RIT2|6014|Ras-like without CAAX 2##Y07565|RIT2|6014|Ras-like without CAAX 2##EU176218|SYT4|6860|synaptotagmin IV##AK299652|SYT4|6860|synaptotagmin IV##AF299075|SYT4|6860|synaptotagmin IV##AK299593|SYT4|6860|synaptotagmin IV##AK297275|SYT4|6860|synaptotagmin IV##BC036538|SYT4|6860|synaptotagmin IV##AB037763|SYT4|6860|synaptotagmin IV##AK291154|SYT4|6860|synaptotagmin IV##AK293791|SYT4|6860|synaptotagmin IV##AK297379|SYT4|6860|synaptotagmin IV##AK311335|SYT4|6860|synaptotagmin IV##NM_020783|SYT4|6860|synaptotagmin IV##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1	0.0	0.0	
chr19	6668692	6668831	reg1020247.p1	3.803	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-77603	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-77655	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-77729	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	1363	-	AF064090 NM_003807 NM_172014	1837	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	51895	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.980142	0.0	denovo_WM_7:-34:0.486	denovo_WM_7:-36:0.426
chr5	40490682	40490833	reg1008744.p1	3.803	+	TSC_hg19_v1_chr5_-_39425304 NM_001244871 NM_001343	-1065440	-	TSC_hg19_v1_chr5_-_39425082 AK314381	-1065693	-	BC003064 U53446 TSC_hg19_v1_chr5_-_39424971	-1065806	-	TSC_hg19_v1_chr5_+_40680033 BC027934 NM_000958	189270	+	TSC_hg19_v1_chr5_+_40680042 L25124	189287	+	AF023244 BC036536 BC015701 AK312560 AK307131 AK303119 NM_012382	265283	-	NM_001244871|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##NM_001343|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##AK314381|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC003064|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##U53446|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC027934|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##NM_000958|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##L25124|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##AF023244|TTC33|23548|tetratricopeptide repeat domain 33##BC036536|TTC33|23548|tetratricopeptide repeat domain 33##BC015701|TTC33|23548|tetratricopeptide repeat domain 33##AK312560|TTC33|23548|tetratricopeptide repeat domain 33##AK307131|TTC33|23548|tetratricopeptide repeat domain 33##AK303119|TTC33|23548|tetratricopeptide repeat domain 33##NM_012382|TTC33|23548|tetratricopeptide repeat domain 33	0.0	0.0	
chr6	137545177	137545290	reg1011062.p1	3.803	+	TSC_hg19_v1_chr6_-_137540556 NM_000416	-4675	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-4688	-	TSC_hg19_v1_chr6_-_137540520 EF535103 J03143 AK312674 AK222803	-4721	-	BC051352 AK096362 NM_175747	270292	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	643304	+	TSC_hg19_v1_chr6_-_138189314 AK124173	644117	-	NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##EF535103|IFNGR1|3459|interferon gamma receptor 1##J03143|IFNGR1|3459|interferon gamma receptor 1##AK312674|IFNGR1|3459|interferon gamma receptor 1##AK222803|IFNGR1|3459|interferon gamma receptor 1##BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3	1.049033	0.0	
chr8	33365595	33365727	reg1017415.p2	3.803	+	NM_032509 TSC_hg19_v1_chr8_+_33342703 AK314491 AK225476 AK027469 BC015965 AF251062 BC039740 BC028230 BC050528 CU690708	-22957	+	AK098505 AK297132 TSC_hg19_v1_chr8_-_33330636 AK303231 AJ512465 AJ535838 AJ535839 AK292993 AJ582015 NM_032664	-35015	-	TSC_hg19_v1_chr8_-_33330616 BC004884	-35048	-	AK026916 TSC_hg19_v1_chr8_-_33370644 BX648410 BC007387 BC066935 NM_025115 NM_001102401	4966	-	AK022588 NM_024787 TSC_hg19_v1_chr8_-_33424647	59002	-	TSC_hg19_v1_chr8_-_33457295 BC067804	91626	-	NM_032509|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK314491|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK225476|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK027469|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC015965|MAK16|84549|MAK16 homolog (S. cerevisiae)##AF251062|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC039740|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC028230|MAK16|84549|MAK16 homolog (S. cerevisiae)##BC050528|MAK16|84549|MAK16 homolog (S. cerevisiae)##AK098505|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK297132|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK303231|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ512465|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535838|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ535839|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK292993|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AJ582015|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##NM_032664|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##BC004884|FUT10|84750|fucosyltransferase 10 (alpha (1,3) fucosyltransferase)##AK026916|TTI2|80185|TELO2 interacting protein 2##BX648410|TTI2|80185|TELO2 interacting protein 2##BC007387|TTI2|80185|TELO2 interacting protein 2##BC066935|TTI2|80185|TELO2 interacting protein 2##NM_025115|TTI2|80185|TELO2 interacting protein 2##NM_001102401|TTI2|80185|TELO2 interacting protein 2##AK022588|RNF122|79845|ring finger protein 122##NM_024787|RNF122|79845|ring finger protein 122##BC067804|DUSP26|78986|dual specificity phosphatase 26 (putative)	1.994921	0.0	denovo_WM_7:-30:0.415	denovo_WM_7:-31:0.284	denovo_WM_7:-46:0.291	denovo_WM_7:-47:0.423
chrX	121602566	121602679	reg1017489.p1	3.803	+	TSC_hg19_v1_chrX_+_120181464 BC050732 NM_012084 AK313356	-1421182	+	BC029540 NM_001080141 NM_001080146	-1482985	-	BC029540 NM_001080137 NM_001080138 NM_001080139 NM_001080141 NM_001080142 NM_001080143 NM_001080144 NM_001080145 NM_001080146 NM_001242922 NM_173571	-1487845	-	NM_000828 NM_007325 BC032004 TSC_hg19_v1_chrX_+_122318203 BC117464 U10301 U10302 AB384892 HQ258659	715618	+	TSC_hg19_v1_chrX_-_122866885 AK001758	1264261	-	TSC_hg19_v1_chrX_-_122866897 NM_001081550	1264275	-	BC050732|GLUD2|2747|glutamate dehydrogenase 2##NM_012084|GLUD2|2747|glutamate dehydrogenase 2##AK313356|GLUD2|2747|glutamate dehydrogenase 2##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##BC029540|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_001080137|CT47A10|728036|cancer/testis antigen family 47, member A10##NM_001080138|CT47A9|728042|cancer/testis antigen family 47, member A9##NM_001080139|CT47A8|728049|cancer/testis antigen family 47, member A8##NM_001080141|CT47A6|728062|cancer/testis antigen family 47, member A6##NM_001080142|CT47A5|728072|cancer/testis antigen family 47, member A5##NM_001080143|CT47A4|728075|cancer/testis antigen family 47, member A4##NM_001080144|CT47A3|728082|cancer/testis antigen family 47, member A3##NM_001080145|CT47A2|728090|cancer/testis antigen family 47, member A2##NM_001080146|CT47A1|728096|cancer/testis antigen family 47, member A1##NM_001242922|CT47A12|100507170|cancer/testis antigen family 47, member A12##NM_173571|CT47A11|255313|cancer/testis antigen family 47, member A11##NM_000828|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##NM_007325|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC032004|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##BC117464|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10301|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##U10302|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##HQ258659|GRIA3|2892|glutamate receptor, ionotrophic, AMPA 3##AK001758|THOC2|57187|THO complex 2##NM_001081550|THOC2|57187|THO complex 2	0.0	0.0	
chr13	21635709	21635889	reg1008929.p1	3.802	+	TSC_hg19_v1_chr13_-_21635719 NM_014572	-83	-	TSC_hg19_v1_chr13_-_21635685 BC127671 AF207547 AB209897 BC071572	-134	-	TSC_hg19_v1_chr13_-_21476909 NM_022459	-158862	-	NM_005870 TSC_hg19_v1_chr13_+_21714679	78868	+	BC030836 TSC_hg19_v1_chr13_+_21714684	78888	+	TSC_hg19_v1_chr13_+_21714721 AF153608 U78303 AK311748 AY550970 U96915 AB464207 CR457035 CU689040 EU446760	78929	+	NM_014572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##BC127671|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AF207547|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##AB209897|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##BC071572|LATS2|26524|LATS, large tumor suppressor, homolog 2 (Drosophila)##NM_022459|XPO4|64328|exportin 4##NM_005870|SAP18|10284|Sin3A-associated protein, 18kDa##BC030836|SAP18|10284|Sin3A-associated protein, 18kDa##AF153608|SAP18|10284|Sin3A-associated protein, 18kDa##U78303|SAP18|10284|Sin3A-associated protein, 18kDa##AK311748|SAP18|10284|Sin3A-associated protein, 18kDa##AY550970|SAP18|10284|Sin3A-associated protein, 18kDa##U96915|SAP18|10284|Sin3A-associated protein, 18kDa##CR457035|SAP18|10284|Sin3A-associated protein, 18kDa##EU446760|SAP18|10284|Sin3A-associated protein, 18kDa	0.0	0.0	
chr4	153452582	153452700	reg1006431.p1	3.802	+	NM_001013415 AY008274	-148977	-	AF383178 AK001933 BC037320 AB209725 AB527140 TSC_hg19_v1_chr4_-_153273893 AK315142 BC059373 AK223449 AK299722 AF411972 AY033553 NM_018315	-178745	-	TSC_hg19_v1_chr4_-_152682144 AB019410 AK303461 AK222887 AK225241 AK312957 AF151033 AF026851 BC067838 BC130348 BC136547 NM_004564	-770500	-	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	3653	-	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	4792	+	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	148559	-	NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##AF383178|FBXW7|55294|F-box and WD repeat domain containing 7##AK001933|FBXW7|55294|F-box and WD repeat domain containing 7##BC037320|FBXW7|55294|F-box and WD repeat domain containing 7##AB209725|FBXW7|55294|F-box and WD repeat domain containing 7##AK315142|FBXW7|55294|F-box and WD repeat domain containing 7##BC059373|FBXW7|55294|F-box and WD repeat domain containing 7##AK223449|FBXW7|55294|F-box and WD repeat domain containing 7##AK299722|FBXW7|55294|F-box and WD repeat domain containing 7##AF411972|FBXW7|55294|F-box and WD repeat domain containing 7##AY033553|FBXW7|55294|F-box and WD repeat domain containing 7##NM_018315|FBXW7|55294|F-box and WD repeat domain containing 7##AB019410|PET112|5188|PET112 homolog (yeast)##AK303461|PET112|5188|PET112 homolog (yeast)##AK222887|PET112|5188|PET112 homolog (yeast)##AK225241|PET112|5188|PET112 homolog (yeast)##AK312957|PET112|5188|PET112 homolog (yeast)##AF151033|PET112|5188|PET112 homolog (yeast)##AF026851|PET112|5188|PET112 homolog (yeast)##BC067838|PET112|5188|PET112 homolog (yeast)##BC130348|PET112|5188|PET112 homolog (yeast)##BC136547|PET112|5188|PET112 homolog (yeast)##NM_004564|PET112|5188|PET112 homolog (yeast)##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154	0.997285	0.0	
chr5	14202280	14202379	reg1006678.p1	3.802	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-58657	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-190459	-	AX800026 AY045575 NM_001369	-257741	-	TSC_hg19_v1_chr5_+_14488527 AK131423	286210	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	379571	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	379635	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	2.990668	0.0	denovo_WM_7:81:0.248	denovo_WM_7:82:0.213	denovo_WM_7:-91:0.777	denovo_WM_7:101:0.214	denovo_WM_7:102:0.249
chr7	8065398	8065527	reg1016080.p1	3.802	+	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	-57029	+	BC009868 NM_002947	-307225	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-385089	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	236254	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	236329	-	TSC_hg19_v1_chr7_-_8302174 U38260 L01100 BC008640 BC005922 NM_004968	236711	-	NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa##U38260|ICA1|3382|islet cell autoantigen 1, 69kDa##L01100|ICA1|3382|islet cell autoantigen 1, 69kDa##BC008640|ICA1|3382|islet cell autoantigen 1, 69kDa##BC005922|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_004968|ICA1|3382|islet cell autoantigen 1, 69kDa	0.72855	0.0	denovo_WM_7:-6:0.539
chr9	132251312	132251419	reg1013084.p1	3.802	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	-11	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	-168070	+	TSC_hg19_v1_chr9_-_131940541 NM_203434	-310825	-	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	76	+	BC112353 AK093122 AX747938 NM_199350	131672	-	TSC_hg19_v1_chr9_+_132388441 NM_014064 AK290957 AK292332 AK298840 AK307056 AK313829	137060	+	BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##NM_203434|IER5L|389792|immediate early response 5-like##BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190##BC112353|C9orf50|375759|chromosome 9 open reading frame 50##AK093122|C9orf50|375759|chromosome 9 open reading frame 50##NM_199350|C9orf50|375759|chromosome 9 open reading frame 50##NM_014064|METTL11A|28989|methyltransferase like 11A##AK290957|METTL11A|28989|methyltransferase like 11A##AK292332|METTL11A|28989|methyltransferase like 11A##AK298840|METTL11A|28989|methyltransferase like 11A##AK307056|METTL11A|28989|methyltransferase like 11A##AK313829|METTL11A|28989|methyltransferase like 11A	0.0	0.0	
chr12	14948208	14948324	reg1016637.p1	3.801	+	TSC_hg19_v1_chr12_+_14927338 AK001765 AK303301 BC003602 CU678528 AL133626	-20856	+	NM_177925 TSC_hg19_v1_chr12_+_14927302	-20981	+	AB527963 TSC_hg19_v1_chr12_-_14924064 AK311916 BC020884 NM_175054	-24225	-	AF118023 TSC_hg19_v1_chr12_-_14956333	8060	-	TSC_hg19_v1_chr12_-_14956403 AB029309 BC023532 BC001621 NM_016312	8119	-	TSC_hg19_v1_chr12_-_14956411 BX647347 AK297410 AK302244	8172	-	AK001765|H2AFJ|55766|H2A histone family, member J##AK303301|H2AFJ|55766|H2A histone family, member J##BC003602|H2AFJ|55766|H2A histone family, member J##AL133626|H2AFJ|55766|H2A histone family, member J##NM_177925|H2AFJ|55766|H2A histone family, member J##BC020884|HIST4H4|121504|histone cluster 4, H4##NM_175054|HIST4H4|121504|histone cluster 4, H4##AF118023|WBP11|51729|WW domain binding protein 11##AB029309|WBP11|51729|WW domain binding protein 11##BC023532|WBP11|51729|WW domain binding protein 11##BC001621|WBP11|51729|WW domain binding protein 11##NM_016312|WBP11|51729|WW domain binding protein 11##BX647347|WBP11|51729|WW domain binding protein 11##AK297410|WBP11|51729|WW domain binding protein 11##AK302244|WBP11|51729|WW domain binding protein 11	0.029812	0.0	
chr16	21371595	21371703	reg1010202.p1	3.801	+	BX648477 NM_001014444 NM_001888	-57262	-	BC018061 AK290852 TSC_hg19_v1_chr16_-_21289660	-82001	-	CU676152 DQ892377 DQ895591 AK310424 U85772 L02950 TSC_hg19_v1_chr16_-_21289612 BC008398	-82056	-	BC036263 NM_130464	65008	-	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	160103	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	239241	+	BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##BC018061|CRYM|1428|crystallin, mu##AK290852|CRYM|1428|crystallin, mu##DQ892377|CRYM|1428|crystallin, mu##DQ895591|CRYM|1428|crystallin, mu##AK310424|CRYM|1428|crystallin, mu##U85772|CRYM|1428|crystallin, mu##L02950|CRYM|1428|crystallin, mu##BC008398|CRYM|1428|crystallin, mu##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9	0.0	0.0	
chr19	18811545	18811628	reg1003481.p2	3.801	+	AY360171 TSC_hg19_v1_chr19_+_18794489 BC028050 AB527764 CU688378 DQ893310 DQ894228 AB014516	-17063	+	TSC_hg19_v1_chr19_+_18794453 AK024089 AY040323 NM_001098482 NM_015321	-17162	+	TSC_hg19_v1_chr19_+_18747837 AK001940 AK222656 AK294074 NM_018316 BC026319	-63752	+	U75488 TSC_hg19_v1_chr19_-_18888853	77204	-	AB086984 BC033676 BC110847 L32137 BC125092 TSC_hg19_v1_chr19_-_18902115 AK074508 AK223216 AK290595 AK296586 AK297798 AK297814 NM_000095	90511	-	TSC_hg19_v1_chr19_+_18942742 NM_002911 BC039817	131159	+	AY360171|CRTC1|23373|CREB regulated transcription coactivator 1##BC028050|CRTC1|23373|CREB regulated transcription coactivator 1##DQ893310|CRTC1|23373|CREB regulated transcription coactivator 1##DQ894228|CRTC1|23373|CREB regulated transcription coactivator 1##AB014516|CRTC1|23373|CREB regulated transcription coactivator 1##AK024089|CRTC1|23373|CREB regulated transcription coactivator 1##AY040323|CRTC1|23373|CREB regulated transcription coactivator 1##NM_001098482|CRTC1|23373|CREB regulated transcription coactivator 1##NM_015321|CRTC1|23373|CREB regulated transcription coactivator 1##AK001940|KLHL26|55295|kelch-like 26 (Drosophila)##AK222656|KLHL26|55295|kelch-like 26 (Drosophila)##AK294074|KLHL26|55295|kelch-like 26 (Drosophila)##NM_018316|KLHL26|55295|kelch-like 26 (Drosophila)##BC026319|KLHL26|55295|kelch-like 26 (Drosophila)##AB086984|COMP|1311|cartilage oligomeric matrix protein##BC033676|COMP|1311|cartilage oligomeric matrix protein##BC110847|COMP|1311|cartilage oligomeric matrix protein##L32137|COMP|1311|cartilage oligomeric matrix protein##BC125092|COMP|1311|cartilage oligomeric matrix protein##AK074508|COMP|1311|cartilage oligomeric matrix protein##AK223216|COMP|1311|cartilage oligomeric matrix protein##AK290595|COMP|1311|cartilage oligomeric matrix protein##AK296586|COMP|1311|cartilage oligomeric matrix protein##AK297798|COMP|1311|cartilage oligomeric matrix protein##AK297814|COMP|1311|cartilage oligomeric matrix protein##NM_000095|COMP|1311|cartilage oligomeric matrix protein##NM_002911|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)##BC039817|UPF1|5976|UPF1 regulator of nonsense transcripts homolog (yeast)	0.0	0.0	
chr19	39497666	39497770	reg1001412.p2	3.801	+	BC012385 AF386743 NM_024907	-31384	-	AK057934 NM_148169	-54392	-	TSC_hg19_v1_chr19_+_39421608 NM_021107 NM_033363 Y11681 BC007499 BC001617	-76115	+	CU677033 TSC_hg19_v1_chr19_-_39522905	25181	-	TSC_hg19_v1_chr19_-_39523185 BC030060 AF436061 BC014527 NM_178820	25515	-	AK131245 NM_001004318	77226	+	BC012385|FBXO17|115290|F-box protein 17##AF386743|FBXO17|115290|F-box protein 17##NM_024907|FBXO17|115290|F-box protein 17##AK057934|FBXO17|115290|F-box protein 17##NM_148169|FBXO17|115290|F-box protein 17##NM_021107|MRPS12|6183|mitochondrial ribosomal protein S12##NM_033363|MRPS12|6183|mitochondrial ribosomal protein S12##Y11681|MRPS12|6183|mitochondrial ribosomal protein S12##BC007499|MRPS12|6183|mitochondrial ribosomal protein S12##BC001617|MRPS12|6183|mitochondrial ribosomal protein S12##BC030060|FBXO27|126433|F-box protein 27##AF436061|FBXO27|126433|F-box protein 27##BC014527|FBXO27|126433|F-box protein 27##NM_178820|FBXO27|126433|F-box protein 27##AK131245|PAPL|390928|iron/zinc purple acid phosphatase-like protein##NM_001004318|PAPL|390928|iron/zinc purple acid phosphatase-like protein	0.996174	0.903663	CTCF.p2:41:0.904
chr19	45874166	45874310	reg1014409.p1	3.801	+	TSC_hg19_v1_chr19_-_45873851 NM_000400 NM_001130867	-393	-	BC008346 TSC_hg19_v1_chr19_-_45873816 BC108255 AK303358 BC110522 BC110523	-500	-	BC025318 NM_177417 BC062998 BC073841	-30231	+	BC032298 AY869712 BC014499 BC020259 NM_006663 TSC_hg19_v1_chr19_-_45908318	34075	-	NM_012099 U86751 BC054044 BC046141 BC108889	35345	+	AK130326 BC064913 TSC_hg19_v1_chr19_-_45909620 NM_001142502	35357	-	NM_000400|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##NM_001130867|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC008346|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC108255|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##AK303358|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC110522|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC110523|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC025318|KLC3|147700|kinesin light chain 3##NM_177417|KLC3|147700|kinesin light chain 3##BC062998|KLC3|147700|kinesin light chain 3##BC073841|KLC3|147700|kinesin light chain 3##BC032298|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##AY869712|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC014499|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC020259|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_006663|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_012099|CD3EAP|10849|CD3e molecule, epsilon associated protein##U86751|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC054044|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC046141|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC108889|CD3EAP|10849|CD3e molecule, epsilon associated protein##AK130326|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC064913|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_001142502|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like	0.997194	0.0	denovo_WM_7:-25:0.976
chr2	9954084	9954247	reg1014651.p1	3.801	+	TSC_hg19_v1_chr2_-_9771102 NM_006826 X56468 BC056867 AK297624 BC001197 AK302208 BC093019 AK309462	-183040	-	TSC_hg19_v1_chr2_-_9771100 X57347 AK316158	-183116	-	AF070556 TSC_hg19_v1_chr2_-_9770668 BT020014 CU691168 AM393330 AM393338 AM393358 AM393674 AB464331 BC050601	-183552	-	NM_005680 BC018137 TSC_hg19_v1_chr2_+_9983599 AK309751 AK308070 AK315098 AK295402 AK026521 AB527836 DQ894659	29455	+	NM_198182 TSC_hg19_v1_chr2_+_10091799 AK293855 AK296982 AK312950 BC063299 BC098456 AF198489 BC067519 BC067520 BC067521	137685	+	TSC_hg19_v1_chr2_+_10183698 BC063286 NM_003597 AK315345 AF272830 AK289816 BC069383 BC074922 AF028008 AJ275989 AK316439 NM_001177716	229627	+	NM_006826|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X56468|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC056867|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK297624|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC001197|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK302208|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC093019|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK309462|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##X57347|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AK316158|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AF070556|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BT020014|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393330|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393338|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393358|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##AM393674|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##BC050601|YWHAQ|10971|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide##NM_005680|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##BC018137|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK309751|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK308070|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK315098|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK295402|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##AK026521|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##DQ894659|TAF1B|9014|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa##NM_198182|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK293855|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK296982|GRHL1|29841|grainyhead-like 1 (Drosophila)##AK312950|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063299|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC098456|GRHL1|29841|grainyhead-like 1 (Drosophila)##AF198489|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067519|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067520|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC067521|GRHL1|29841|grainyhead-like 1 (Drosophila)##BC063286|KLF11|8462|Kruppel-like factor 11##NM_003597|KLF11|8462|Kruppel-like factor 11##AK315345|KLF11|8462|Kruppel-like factor 11##AF272830|KLF11|8462|Kruppel-like factor 11##AK289816|KLF11|8462|Kruppel-like factor 11##BC069383|KLF11|8462|Kruppel-like factor 11##BC074922|KLF11|8462|Kruppel-like factor 11##AF028008|KLF11|8462|Kruppel-like factor 11##AJ275989|KLF11|8462|Kruppel-like factor 11##AK316439|KLF11|8462|Kruppel-like factor 11##NM_001177716|KLF11|8462|Kruppel-like factor 11	0.0	0.996496	CTCF.p2:-20:0.980
chr3	12686611	12686723	reg1012997.p1	3.801	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-88087	+	NM_001195279	-99705	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-160431	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	18800	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	18948	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	19007	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.992193	0.0	
chr6	133071961	133072060	reg1010554.p2	3.801	+	U39664 BC096268 AJ132099 BC096265 BC096266 BC096267 TSC_hg19_v1_chr6_-_133035195 AK290425 AK314265 NM_004666	-36822	-	AY180374 NM_138327 BC101825 BC112194	-104857	-	AY703480 NM_001033080 AB464299	-126596	-	BC064641 AB435062 AB435063 AB435064 AB435065 NM_001242350 HQ258282 HQ258449 AB026705 AJ132100 D89974 NM_004665 AK290908 AK298719 BC126145 BC126147 BC144064	6991	-	AK292125 NM_078488 TSC_hg19_v1_chr6_-_133084603	12585	-	AK124442 BC069570 AK293853 TSC_hg19_v1_chr6_-_133119740 NM_052831 AK289918	47691	-	U39664|VNN1|8876|vanin 1##BC096268|VNN1|8876|vanin 1##AJ132099|VNN1|8876|vanin 1##BC096265|VNN1|8876|vanin 1##BC096266|VNN1|8876|vanin 1##BC096267|VNN1|8876|vanin 1##AK290425|VNN1|8876|vanin 1##AK314265|VNN1|8876|vanin 1##NM_004666|VNN1|8876|vanin 1##AY180374|TAAR1|134864|trace amine associated receptor 1##NM_138327|TAAR1|134864|trace amine associated receptor 1##BC101825|TAAR1|134864|trace amine associated receptor 1##BC112194|TAAR1|134864|trace amine associated receptor 1##AY703480|TAAR2|9287|trace amine associated receptor 2##NM_001033080|TAAR2|9287|trace amine associated receptor 2##BC064641|VNN2|8875|vanin 2##AB435062|VNN2|8875|vanin 2##AB435063|VNN2|8875|vanin 2##AB435064|VNN2|8875|vanin 2##AB435065|VNN2|8875|vanin 2##NM_001242350|VNN2|8875|vanin 2##HQ258282|VNN2|8875|vanin 2##HQ258449|VNN2|8875|vanin 2##AB026705|VNN2|8875|vanin 2##AJ132100|VNN2|8875|vanin 2##D89974|VNN2|8875|vanin 2##NM_004665|VNN2|8875|vanin 2##AK290908|VNN2|8875|vanin 2##AK298719|VNN2|8875|vanin 2##BC126145|VNN2|8875|vanin 2##BC126147|VNN2|8875|vanin 2##BC144064|VNN2|8875|vanin 2##AK292125|VNN2|8875|vanin 2##NM_078488|VNN2|8875|vanin 2##AK124442|C6orf192|116843|chromosome 6 open reading frame 192##BC069570|C6orf192|116843|chromosome 6 open reading frame 192##AK293853|C6orf192|116843|chromosome 6 open reading frame 192##NM_052831|C6orf192|116843|chromosome 6 open reading frame 192##AK289918|C6orf192|116843|chromosome 6 open reading frame 192	0.0	0.0	
chr10	6533940	6534096	reg1004005.p1	3.800	+	NM_004566 TSC_hg19_v1_chr10_+_6244894 L77662 AK291263 BC040482 AF056320	-289142	+	TSC_hg19_v1_chr10_+_6186913 AK303039 BC037258	-347106	+	TSC_hg19_v1_chr10_+_6186890 AK131307	-347134	+	AK293935 AK312411 AK308099 NM_001242413 NM_006257 L01087 TSC_hg19_v1_chr10_-_6622303	88243	-	TSC_hg19_v1_chr10_+_6622460 AY007155	88462	+	TSC_hg19_v1_chr10_-_7451209 AB046837 BC152430 NM_001018039	917232	-	NM_004566|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##L77662|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK291263|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC040482|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AF056320|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK303039|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##BC037258|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK131307|PFKFB3|5209|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3##AK293935|PRKCQ|5588|protein kinase C, theta##AK312411|PRKCQ|5588|protein kinase C, theta##AK308099|PRKCQ|5588|protein kinase C, theta##NM_001242413|PRKCQ|5588|protein kinase C, theta##NM_006257|PRKCQ|5588|protein kinase C, theta##L01087|PRKCQ|5588|protein kinase C, theta##AY007155|LOC439949|439949|uncharacterized LOC439949##AB046837|SFMBT2|57713|Scm-like with four mbt domains 2##BC152430|SFMBT2|57713|Scm-like with four mbt domains 2##NM_001018039|SFMBT2|57713|Scm-like with four mbt domains 2	0.0	0.0	
chr16	71851366	71851451	reg1013781.p2	3.800	+	TSC_hg19_v1_chr16_-_71842963 BC036283 AK128078 NM_001030007 NM_001128 AK314484	-8430	-	TSC_hg19_v1_chr16_-_71842738 AK293233 AK225906 AK294546 AK299630	-8655	-	TSC_hg19_v1_chr16_-_71842690 AB015317 Y12226	-8774	-	TSC_hg19_v1_chr16_+_71879878 AB621810	28467	+	TSC_hg19_v1_chr16_+_71879908 NM_001137675	28513	+	AF070588 AK296603 NM_001201553 NM_017530	66019	-	BC036283|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK128078|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001030007|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001128|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK314484|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK293233|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK225906|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK294546|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK299630|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AB015317|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##Y12226|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##NM_001137675|ATXN1L|342371|ataxin 1-like##AF070588|ZNF821|55565|zinc finger protein 821##AK296603|ZNF821|55565|zinc finger protein 821##NM_001201553|ZNF821|55565|zinc finger protein 821##NM_017530|ZNF821|55565|zinc finger protein 821	1.016823	0.0	
chr16	88700115	88700213	reg1013683.p1	3.800	+	TSC_hg19_v1_chr16_+_88636880 BC050463	-63295	+	AK056632 AK225807 TSC_hg19_v1_chr16_+_88636823	-63336	+	AK300254 AK302716 TSC_hg19_v1_chr16_+_88636810	-63354	+	AF152099 AY358471 BC069410 NM_013278 BC101835 BC112196 AF142410	4839	+	AK097127 AK125578 AK300049 AK309030 TSC_hg19_v1_chr16_-_88717462 BT006861 DQ893235 DQ896565 AB590173 BC048338 BC033739 BC006465 BC011565 BC028224 M21186 NM_000101	17285	-	BT006930 AB527587 DQ890562 DQ893724 TSC_hg19_v1_chr16_-_88729519 NM_002461 U49260 AB209229 BC000011	29353	-	BC050463|ZC3H18|124245|zinc finger CCCH-type containing 18##AK225807|ZC3H18|124245|zinc finger CCCH-type containing 18##AK300254|ZC3H18|124245|zinc finger CCCH-type containing 18##AK302716|ZC3H18|124245|zinc finger CCCH-type containing 18##AF152099|IL17C|27189|interleukin 17C##AY358471|IL17C|27189|interleukin 17C##BC069410|IL17C|27189|interleukin 17C##NM_013278|IL17C|27189|interleukin 17C##BC101835|IL17C|27189|interleukin 17C##BC112196|IL17C|27189|interleukin 17C##AK097127|CYBA|1535|cytochrome b-245, alpha polypeptide##AK300049|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006861|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ893235|CYBA|1535|cytochrome b-245, alpha polypeptide##DQ896565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC033739|CYBA|1535|cytochrome b-245, alpha polypeptide##BC006465|CYBA|1535|cytochrome b-245, alpha polypeptide##BC011565|CYBA|1535|cytochrome b-245, alpha polypeptide##BC028224|CYBA|1535|cytochrome b-245, alpha polypeptide##M21186|CYBA|1535|cytochrome b-245, alpha polypeptide##NM_000101|CYBA|1535|cytochrome b-245, alpha polypeptide##BT006930|MVD|4597|mevalonate (diphospho) decarboxylase##DQ890562|MVD|4597|mevalonate (diphospho) decarboxylase##DQ893724|MVD|4597|mevalonate (diphospho) decarboxylase##NM_002461|MVD|4597|mevalonate (diphospho) decarboxylase##U49260|MVD|4597|mevalonate (diphospho) decarboxylase##AB209229|MVD|4597|mevalonate (diphospho) decarboxylase##BC000011|MVD|4597|mevalonate (diphospho) decarboxylase	0.0	0.566991	CTCF.p2:-62:0.567
chr1	97432221	97432373	reg1009499.p1	3.800	+	BC030757 TSC_hg19_v1_chr1_+_97260652	-171714	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-245013	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-287101	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	954192	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	954262	-	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	954309	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase	0.0	0.99912	CTCF.p2:2:0.999
chr2	136057589	136057716	reg1017589.p1	3.800	+	NM_001172435 NM_012233 TSC_hg19_v1_chr2_+_135809861 AK022494 BC146809 BC071602 D31886 AB385272 AB449877 BC030992	-247736	+	BC137276 BC137277 BC144555 AY574901 AY574902 AY574903 AY574904 AY574905 NM_001018046 NM_025052	-275406	-	TSC_hg19_v1_chr2_+_135676409 AF048732	-381233	+	AK095362 BC089429 NM_032143	231134	-	TSC_hg19_v1_chr2_+_136289050 BC001217 D21852 BC041093 NM_015361	231408	+	TSC_hg19_v1_chr2_+_136499328 NM_014607 AK311058	441585	+	NM_001172435|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##NM_012233|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AK022494|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC146809|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC071602|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##D31886|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##AB449877|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC030992|RAB3GAP1|22930|RAB3 GTPase activating protein subunit 1 (catalytic)##BC137276|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC137277|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##BC144555|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574901|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574902|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574903|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574904|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AY574905|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_001018046|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##NM_025052|YSK4|80122|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)##AF048732|CCNT2|905|cyclin T2##AK095362|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC089429|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##NM_032143|ZRANB3|84083|zinc finger, RAN-binding domain containing 3##BC001217|R3HDM1|23518|R3H domain containing 1##D21852|R3HDM1|23518|R3H domain containing 1##BC041093|R3HDM1|23518|R3H domain containing 1##NM_015361|R3HDM1|23518|R3H domain containing 1##NM_014607|UBXN4|23190|UBX domain protein 4##AK311058|UBXN4|23190|UBX domain protein 4	0.049476	0.0	
chr3	171488627	171488741	reg1016746.p1	3.800	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-310613	-	NM_000340	-743917	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-744151	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	39571	-	NM_001164436 AK026825	72464	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	268731	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	0.998964	0.0	
chr5	137558689	137558769	reg1008748.p2	3.800	+	AK304635 TSC_hg19_v1_chr5_-_137549034 NM_004661	-9698	-	AF191341 BT009810 AB590268 DQ891686 DQ894870 TSC_hg19_v1_chr5_-_137549013 BC017713 AF053977 BC005258 BC010944 AK291610 AB011472 AK223250	-9726	-	TSC_hg19_v1_chr5_+_137514857 AK296879 AK025790 AF153329 BC012999	-43914	+	AF051767 DQ890850 DQ894004 BC037951 AY358997 AK314022 AK297693 NM_001496 AY359037 TSC_hg19_v1_chr5_-_137610343	51499	-	M34065 BC019089 TSC_hg19_v1_chr5_-_137667469 NM_001790 NM_022809	108764	-	NM_001135647 TSC_hg19_v1_chr5_+_137673265 BC052993	114525	+	AK304635|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##NM_004661|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF191341|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BT009810|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ891686|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##DQ894870|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC017713|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AF053977|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC005258|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##BC010944|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK291610|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AB011472|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK223250|CDC23|8697|cell division cycle 23 homolog (S. cerevisiae)##AK296879|KIF20A|10112|kinesin family member 20A##AK025790|KIF20A|10112|kinesin family member 20A##AF153329|KIF20A|10112|kinesin family member 20A##BC012999|KIF20A|10112|kinesin family member 20A##AF051767|GFRA3|2676|GDNF family receptor alpha 3##DQ890850|GFRA3|2676|GDNF family receptor alpha 3##DQ894004|GFRA3|2676|GDNF family receptor alpha 3##BC037951|GFRA3|2676|GDNF family receptor alpha 3##AY358997|GFRA3|2676|GDNF family receptor alpha 3##AK314022|GFRA3|2676|GDNF family receptor alpha 3##AK297693|GFRA3|2676|GDNF family receptor alpha 3##NM_001496|GFRA3|2676|GDNF family receptor alpha 3##AY359037|GFRA3|2676|GDNF family receptor alpha 3##M34065|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##BC019089|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001790|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_022809|CDC25C|995|cell division cycle 25 homolog C (S. pombe)##NM_001135647|FAM53C|51307|family with sequence similarity 53, member C##BC052993|FAM53C|51307|family with sequence similarity 53, member C	0.0	0.093989	
chr7	117112767	117112863	reg1014827.p2	3.800	+	HQ258436 AK093445 AX748131 BC126186 BC126188 BC144207 BC144212 AF461259 BC028695 BC034963 BC098399 BC068488 NM_130768	-45270	-	BC078170 AK056742 NM_003391 X07876	-149480	-	TSC_hg19_v1_chr7_+_116660294 AY009152 AY009153 AK297510	-452450	+	M28668 NM_000492 TSC_hg19_v1_chr7_+_117120057 BC143713	7223	+	AB051545 AK308081 TSC_hg19_v1_chr7_-_117513496 AK091548 AX747051	400666	-	BC106000 TSC_hg19_v1_chr7_-_117513558 AF377960 NM_033427	400728	-	HQ258436|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AK093445|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126186|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC126188|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144207|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC144212|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##AF461259|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC028695|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC034963|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC098399|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC068488|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##NM_130768|ASZ1|136991|ankyrin repeat, SAM and basic leucine zipper domain containing 1##BC078170|WNT2|7472|wingless-type MMTV integration site family member 2##AK056742|WNT2|7472|wingless-type MMTV integration site family member 2##NM_003391|WNT2|7472|wingless-type MMTV integration site family member 2##X07876|WNT2|7472|wingless-type MMTV integration site family member 2##AY009152|ST7|7982|suppression of tumorigenicity 7##AY009153|ST7|7982|suppression of tumorigenicity 7##AK297510|ST7|7982|suppression of tumorigenicity 7##M28668|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##NM_000492|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##BC143713|CFTR|1080|cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)##AB051545|CTTNBP2|83992|cortactin binding protein 2##AK308081|CTTNBP2|83992|cortactin binding protein 2##AK091548|CTTNBP2|83992|cortactin binding protein 2##BC106000|CTTNBP2|83992|cortactin binding protein 2##AF377960|CTTNBP2|83992|cortactin binding protein 2##NM_033427|CTTNBP2|83992|cortactin binding protein 2	0.0	0.0	
chr11	115340306	115340410	reg1014665.p2	3.799	+	AY309502 TSC_hg19_v1_chr11_-_115088658	-251710	-	NM_182495 AK057953 BC111797 TSC_hg19_v1_chr11_+_114549272 AB463625	-791110	+	AK000134 AK225236 TSC_hg19_v1_chr11_-_114466485 NM_001077639 NM_017678	-873880	-	TSC_hg19_v1_chr11_-_115375134 AB094146 CR457157 CU692354 AF132811 BC125102 BC125103 AY358334 AK075502 BC035930 AK315245 BC047021 NM_001098517 NM_014333	34822	-	TSC_hg19_v1_chr11_-_116643696 DQ892763 DQ896008 AK057832 AK225164 AK289635 AK291111 AK311068 BC006350 NM_001159736 NM_032725	1303340	-	AK301227 BT006642 CU678646 TSC_hg19_v1_chr11_-_116658720 BC004256 BC011929 BC012162 BC017380 AF019767 BC111028	1318357	-	AY309502|CADM1|23705|cell adhesion molecule 1##NM_182495|FAM55B|120406|family with sequence similarity 55, member B##AK057953|FAM55B|120406|family with sequence similarity 55, member B##BC111797|FAM55B|120406|family with sequence similarity 55, member B##AK000134|FAM55D|54827|family with sequence similarity 55, member D##AK225236|FAM55D|54827|family with sequence similarity 55, member D##NM_001077639|FAM55D|54827|family with sequence similarity 55, member D##NM_017678|FAM55D|54827|family with sequence similarity 55, member D##AB094146|CADM1|23705|cell adhesion molecule 1##CR457157|CADM1|23705|cell adhesion molecule 1##AF132811|CADM1|23705|cell adhesion molecule 1##BC125102|CADM1|23705|cell adhesion molecule 1##BC125103|CADM1|23705|cell adhesion molecule 1##AY358334|CADM1|23705|cell adhesion molecule 1##AK075502|CADM1|23705|cell adhesion molecule 1##BC035930|CADM1|23705|cell adhesion molecule 1##AK315245|CADM1|23705|cell adhesion molecule 1##BC047021|CADM1|23705|cell adhesion molecule 1##NM_001098517|CADM1|23705|cell adhesion molecule 1##NM_014333|CADM1|23705|cell adhesion molecule 1##DQ892763|BUD13|84811|BUD13 homolog (S. cerevisiae)##DQ896008|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK057832|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK225164|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK289635|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK291111|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK311068|BUD13|84811|BUD13 homolog (S. cerevisiae)##BC006350|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_001159736|BUD13|84811|BUD13 homolog (S. cerevisiae)##NM_032725|BUD13|84811|BUD13 homolog (S. cerevisiae)##AK301227|ZNF259|8882|zinc finger protein 259##BT006642|ZNF259|8882|zinc finger protein 259##BC004256|ZNF259|8882|zinc finger protein 259##BC011929|ZNF259|8882|zinc finger protein 259##BC012162|ZNF259|8882|zinc finger protein 259##BC017380|ZNF259|8882|zinc finger protein 259##AF019767|ZNF259|8882|zinc finger protein 259##BC111028|ZNF259|8882|zinc finger protein 259	0.999902	0.0	
chr12	50648020	50648177	reg1002329.p2	3.799	+	AF198455 AK297766 TSC_hg19_v1_chr12_-_50616438 NM_001113547	-31642	-	AK023649 AF157325 NM_001243775	-52789	-	TSC_hg19_v1_chr12_-_50561153 AK298924	-86873	-	BC136763 BC144402 BC144403 TSC_hg19_v1_chr12_-_50677266 AK000372 AK314447 AF198454 AL136911 AK222971 AB209512 BC110815 NM_001113546 NM_016357	29197	-	BC054024 AL833333 NM_001145475	142299	-	NM_001170803 NM_001170804 NM_001170808 NM_052879 NM_199188 NM_199190 TSC_hg19_v1_chr12_+_50794671 AL832198 CR936626 AL833272 BC022377 BC063479 AF370416 AK291746 AY004310 AK055521 BX647457 CU687740 EU831655 EU831738 EU831909 EU832003	146594	+	AF198455|LIMA1|51474|LIM domain and actin binding 1##AK297766|LIMA1|51474|LIM domain and actin binding 1##NM_001113547|LIMA1|51474|LIM domain and actin binding 1##AK023649|LIMA1|51474|LIM domain and actin binding 1##AF157325|LIMA1|51474|LIM domain and actin binding 1##NM_001243775|LIMA1|51474|LIM domain and actin binding 1##AK298924|CERS5|91012|ceramide synthase 5##BC136763|LIMA1|51474|LIM domain and actin binding 1##BC144402|LIMA1|51474|LIM domain and actin binding 1##BC144403|LIMA1|51474|LIM domain and actin binding 1##AK000372|LIMA1|51474|LIM domain and actin binding 1##AK314447|LIMA1|51474|LIM domain and actin binding 1##AF198454|LIMA1|51474|LIM domain and actin binding 1##AL136911|LIMA1|51474|LIM domain and actin binding 1##AK222971|LIMA1|51474|LIM domain and actin binding 1##AB209512|LIMA1|51474|LIM domain and actin binding 1##BC110815|LIMA1|51474|LIM domain and actin binding 1##NM_001113546|LIMA1|51474|LIM domain and actin binding 1##NM_016357|LIMA1|51474|LIM domain and actin binding 1##BC054024|FAM186A|121006|family with sequence similarity 186, member A##AL833333|FAM186A|121006|family with sequence similarity 186, member A##NM_001145475|FAM186A|121006|family with sequence similarity 186, member A##NM_001170803|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170804|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_001170808|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_052879|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199188|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_199190|LARP4|113251|La ribonucleoprotein domain family, member 4##AL832198|LARP4|113251|La ribonucleoprotein domain family, member 4##CR936626|LARP4|113251|La ribonucleoprotein domain family, member 4##AL833272|LARP4|113251|La ribonucleoprotein domain family, member 4##BC022377|LARP4|113251|La ribonucleoprotein domain family, member 4##BC063479|LARP4|113251|La ribonucleoprotein domain family, member 4##AF370416|LARP4|113251|La ribonucleoprotein domain family, member 4##AK291746|LARP4|113251|La ribonucleoprotein domain family, member 4##AY004310|LARP4|113251|La ribonucleoprotein domain family, member 4##AK055521|LARP4|113251|La ribonucleoprotein domain family, member 4##BX647457|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831655|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831738|LARP4|113251|La ribonucleoprotein domain family, member 4##EU831909|LARP4|113251|La ribonucleoprotein domain family, member 4##EU832003|LARP4|113251|La ribonucleoprotein domain family, member 4	0.0	0.0	
chr14	101120755	101120907	reg1011277.p2	3.799	+	BC002607 NM_020836	-84701	-	AB527893 CU678064 EU832622 EU832695 NM_001159531	-86498	-	TSC_hg19_v1_chr14_+_100842812 NM_001161476 BX248767 AK291960 NM_024515 BC067872 AY295082	-277993	+	TSC_hg19_v1_chr14_+_101193228 NM_003836 AK289384 AK297918 AK313258 BC007741 BC014015	72392	+	TSC_hg19_v1_chr14_+_101193275 BC013197	72449	+	TSC_hg19_v1_chr14_+_101193330 CU675787 DQ017081 DQ126100 DQ138965 Z12172	72528	+	BC002607|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_020836|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##EU832622|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##EU832695|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_001159531|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_001161476|WDR25|79446|WD repeat domain 25##BX248767|WDR25|79446|WD repeat domain 25##AK291960|WDR25|79446|WD repeat domain 25##NM_024515|WDR25|79446|WD repeat domain 25##BC067872|WDR25|79446|WD repeat domain 25##AY295082|WDR25|79446|WD repeat domain 25##NM_003836|DLK1|8788|delta-like 1 homolog (Drosophila)##AK289384|DLK1|8788|delta-like 1 homolog (Drosophila)##AK297918|DLK1|8788|delta-like 1 homolog (Drosophila)##AK313258|DLK1|8788|delta-like 1 homolog (Drosophila)##BC007741|DLK1|8788|delta-like 1 homolog (Drosophila)##BC014015|DLK1|8788|delta-like 1 homolog (Drosophila)##BC013197|DLK1|8788|delta-like 1 homolog (Drosophila)##DQ017081|DLK1|8788|delta-like 1 homolog (Drosophila)##DQ126100|DLK1|8788|delta-like 1 homolog (Drosophila)##DQ138965|DLK1|8788|delta-like 1 homolog (Drosophila)##Z12172|DLK1|8788|delta-like 1 homolog (Drosophila)	0.0	0.0	
chr16	80710742	80710849	reg1014713.p2	3.799	+	AF125108 NM_130897 BC054892 BC035232	-135907	+	AF055376 AF055377 BC038438 NM_001031804 NM_005360	-1076180	-	TSC_hg19_v1_chr16_+_78133580 NM_016373 NM_130791 NM_130844 AK298322 AF211943 AF395123 AF395124 AK027626 AK291300 AK290438 AF227527 AF227529 AF227528 AF227526 BC003184 AF187015 AY256821 AB590073 BT007445	-2577340	+	TSC_hg19_v1_chr16_-_80837998 AX781671 AX781675 AB590934 CU686816 BC100803 BC100804 BC100805 BC100806 BC069440 AX781670 AK096185 NM_152342 AY273798	127252	-	TSC_hg19_v1_chr16_+_81040102 AK023669 NM_001100624 NM_001100625 NM_018455	329289	+	TSC_hg19_v1_chr16_+_81040132 BC007334	329348	+	AF125108|DYNLRB2|83657|dynein, light chain, roadblock-type 2##NM_130897|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC054892|DYNLRB2|83657|dynein, light chain, roadblock-type 2##BC035232|DYNLRB2|83657|dynein, light chain, roadblock-type 2##AF055376|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##AF055377|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##BC038438|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_001031804|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_005360|MAF|4094|v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian)##NM_016373|WWOX|51741|WW domain containing oxidoreductase##NM_130791|WWOX|51741|WW domain containing oxidoreductase##NM_130844|WWOX|51741|WW domain containing oxidoreductase##AK298322|WWOX|51741|WW domain containing oxidoreductase##AF211943|WWOX|51741|WW domain containing oxidoreductase##AF395123|WWOX|51741|WW domain containing oxidoreductase##AF395124|WWOX|51741|WW domain containing oxidoreductase##AK027626|WWOX|51741|WW domain containing oxidoreductase##AK291300|WWOX|51741|WW domain containing oxidoreductase##AK290438|WWOX|51741|WW domain containing oxidoreductase##AF227527|WWOX|51741|WW domain containing oxidoreductase##AF227529|WWOX|51741|WW domain containing oxidoreductase##AF227528|WWOX|51741|WW domain containing oxidoreductase##AF227526|WWOX|51741|WW domain containing oxidoreductase##BC003184|WWOX|51741|WW domain containing oxidoreductase##AF187015|WWOX|51741|WW domain containing oxidoreductase##AY256821|WWOX|51741|WW domain containing oxidoreductase##BT007445|WWOX|51741|WW domain containing oxidoreductase##AX781671|CDYL2|124359|chromodomain protein, Y-like 2##BC100803|CDYL2|124359|chromodomain protein, Y-like 2##BC100804|CDYL2|124359|chromodomain protein, Y-like 2##BC100805|CDYL2|124359|chromodomain protein, Y-like 2##BC100806|CDYL2|124359|chromodomain protein, Y-like 2##BC069440|CDYL2|124359|chromodomain protein, Y-like 2##AX781670|CDYL2|124359|chromodomain protein, Y-like 2##AK096185|CDYL2|124359|chromodomain protein, Y-like 2##NM_152342|CDYL2|124359|chromodomain protein, Y-like 2##AY273798|CDYL2|124359|chromodomain protein, Y-like 2##AK023669|CENPN|55839|centromere protein N##NM_001100624|CENPN|55839|centromere protein N##NM_001100625|CENPN|55839|centromere protein N##NM_018455|CENPN|55839|centromere protein N##BC007334|CENPN|55839|centromere protein N	0.994851	0.0	
chr18	32586122	32586200	reg1016262.p1	3.799	+	NM_001143827 AK294833 TSC_hg19_v1_chr18_+_32558384	-27861	+	NM_001143826 TSC_hg19_v1_chr18_+_32557008	-29202	+	FJ535564 FJ535565 NM_001198942 NM_001198944 NM_032980 NM_032981 AK295732 U46746 AK295789 U26743 AK315215	-187843	+	TSC_hg19_v1_chr18_+_32621374 NM_014268 AK090945 AX746696 AK315766 BC007318 AB016823 AB528177 AM393705 BT020086 CR536545 CU675609 DQ892923 DQ896172 AK296251	35295	+	TSC_hg19_v1_chr18_+_32821018 NM_001135178 NM_032347 AF533250 AY157641 AK311533 AK027384 BC006172	234885	+	TSC_hg19_v1_chr18_-_32870201 AX721137 AK131291 AK128697 AY234408 AK303447 NM_001112734 NM_001166012	284011	-	NM_001143827|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK294833|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001143826|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##FJ535564|DTNA|1837|dystrobrevin, alpha##FJ535565|DTNA|1837|dystrobrevin, alpha##NM_001198942|DTNA|1837|dystrobrevin, alpha##NM_001198944|DTNA|1837|dystrobrevin, alpha##NM_032980|DTNA|1837|dystrobrevin, alpha##NM_032981|DTNA|1837|dystrobrevin, alpha##AK295732|DTNA|1837|dystrobrevin, alpha##U46746|DTNA|1837|dystrobrevin, alpha##AK295789|DTNA|1837|dystrobrevin, alpha##U26743|DTNA|1837|dystrobrevin, alpha##AK315215|DTNA|1837|dystrobrevin, alpha##NM_014268|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK090945|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK315766|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BC007318|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AB016823|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AM393705|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##BT020086|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##CR536545|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ892923|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##DQ896172|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##AK296251|MAPRE2|10982|microtubule-associated protein, RP/EB family, member 2##NM_001135178|ZNF397|84307|zinc finger protein 397##NM_032347|ZNF397|84307|zinc finger protein 397##AF533250|ZNF397|84307|zinc finger protein 397##AY157641|ZNF397|84307|zinc finger protein 397##AK311533|ZNF397|84307|zinc finger protein 397##AK027384|ZNF397|84307|zinc finger protein 397##BC006172|ZNF397|84307|zinc finger protein 397##AK131291|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK128697|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AY234408|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##AK303447|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001112734|ZSCAN30|100101467|zinc finger and SCAN domain containing 30##NM_001166012|ZSCAN30|100101467|zinc finger and SCAN domain containing 30	0.0	0.930933	CTCF.p2:-22:0.931
chr6	36048581	36048686	reg1018445.p2	3.799	+	TSC_hg19_v1_chr6_+_35995587 BC000092 BC031574 L35264	-52977	+	AK303414 TSC_hg19_v1_chr6_+_35995584	-53050	+	TSC_hg19_v1_chr6_+_35995536 AK291709 L35263	-53088	+	NM_002754 TSC_hg19_v1_chr6_+_36098292 AK308018 BC085196 AF004709 BC000433 BC001641 BC004428 Y10488 AF092535 U93232 AF100546 AB451221 AB451344 AB463892 BT007221 CR536490 CR541687 DQ891372 DQ894551 EU832156 EU832250 AK222922	49681	+	TSC_hg19_v1_chr6_+_36164569 AB033112 NM_015695	115927	+	TSC_hg19_v1_chr6_-_36164979 BC042825	116351	-	BC000092|MAPK14|1432|mitogen-activated protein kinase 14##BC031574|MAPK14|1432|mitogen-activated protein kinase 14##L35264|MAPK14|1432|mitogen-activated protein kinase 14##AK303414|MAPK14|1432|mitogen-activated protein kinase 14##AK291709|MAPK14|1432|mitogen-activated protein kinase 14##L35263|MAPK14|1432|mitogen-activated protein kinase 14##NM_002754|MAPK13|5603|mitogen-activated protein kinase 13##AK308018|MAPK13|5603|mitogen-activated protein kinase 13##BC085196|MAPK13|5603|mitogen-activated protein kinase 13##AF004709|MAPK13|5603|mitogen-activated protein kinase 13##BC000433|MAPK13|5603|mitogen-activated protein kinase 13##BC001641|MAPK13|5603|mitogen-activated protein kinase 13##BC004428|MAPK13|5603|mitogen-activated protein kinase 13##Y10488|MAPK13|5603|mitogen-activated protein kinase 13##AF092535|MAPK13|5603|mitogen-activated protein kinase 13##U93232|MAPK13|5603|mitogen-activated protein kinase 13##AF100546|MAPK13|5603|mitogen-activated protein kinase 13##AB451221|MAPK13|5603|mitogen-activated protein kinase 13##AB451344|MAPK13|5603|mitogen-activated protein kinase 13##BT007221|MAPK13|5603|mitogen-activated protein kinase 13##CR536490|MAPK13|5603|mitogen-activated protein kinase 13##CR541687|MAPK13|5603|mitogen-activated protein kinase 13##DQ891372|MAPK13|5603|mitogen-activated protein kinase 13##DQ894551|MAPK13|5603|mitogen-activated protein kinase 13##EU832156|MAPK13|5603|mitogen-activated protein kinase 13##EU832250|MAPK13|5603|mitogen-activated protein kinase 13##AK222922|MAPK13|5603|mitogen-activated protein kinase 13##AB033112|BRPF3|27154|bromodomain and PHD finger containing, 3##NM_015695|BRPF3|27154|bromodomain and PHD finger containing, 3	0.993732	0.0	denovo_WM_7:-1:0.440	denovo_WM_7:-2:0.513
chr1	186149603	186149700	reg1017433.p1	3.798	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	-446075	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-863181	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-863332	-	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	115756	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	194606	-	BC016514 TSC_hg19_v1_chr1_-_186344361	194694	-	AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)##BC016514|TPR|7175|translocated promoter region (to activated MET oncogene)	0.0	0.0	
chr17	42479914	42479998	reg1012032.p1	3.798	+	AB528003 J02764 BC117443 BC126442 AK297155 AK315335 M34480 NM_000419	-13100	-	TSC_hg19_v1_chr17_-_42441222 BC030200 NM_198475	-38734	-	TSC_hg19_v1_chr17_+_42422669 AK000607 AK222522 AK296090 X62320 AK303830	-57280	+	TSC_hg19_v1_chr17_-_42580760 BC136629 BC144323 AK025600 BC140010	100808	-	TSC_hg19_v1_chr17_-_42580958 NM_001002909	101016	-	TSC_hg19_v1_chr17_+_42634696 NM_001466 BC052266 L37882 BC113402 BC113404 AB017364 AB590852	154870	+	J02764|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##BC117443|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##BC126442|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##AK297155|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##AK315335|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##M34480|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##NM_000419|ITGA2B|3674|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)##BC030200|FAM171A2|284069|family with sequence similarity 171, member A2##NM_198475|FAM171A2|284069|family with sequence similarity 171, member A2##AK000607|GRN|2896|granulin##AK222522|GRN|2896|granulin##AK296090|GRN|2896|granulin##X62320|GRN|2896|granulin##AK303830|GRN|2896|granulin##BC136629|GPATCH8|23131|G patch domain containing 8##BC144323|GPATCH8|23131|G patch domain containing 8##AK025600|GPATCH8|23131|G patch domain containing 8##BC140010|GPATCH8|23131|G patch domain containing 8##NM_001002909|GPATCH8|23131|G patch domain containing 8##NM_001466|FZD2|2535|frizzled family receptor 2##BC052266|FZD2|2535|frizzled family receptor 2##L37882|FZD2|2535|frizzled family receptor 2##BC113402|FZD2|2535|frizzled family receptor 2##BC113404|FZD2|2535|frizzled family receptor 2##AB017364|FZD2|2535|frizzled family receptor 2	0.962883	0.0	denovo_WM_7:37:0.383	denovo_WM_7:38:0.556
chr19	7149255	7149363	reg1018278.p1	3.798	+	TSC_hg19_v1_chr19_-_7099547 AK127494	-49758	-	TSC_hg19_v1_chr19_+_7069718 BC031208 AK297283 AK095524 BC003020 BC058040	-79594	+	AK315405 NM_001044387 NM_001044388 NM_024341	-79847	+	BC047591 BC117172 X02160 NM_000208 NM_001079817 M10051	144651	-	TSC_hg19_v1_chr19_+_7460030 NM_015318	310698	+	TSC_hg19_v1_chr19_+_7460061 AB011093	310768	+	BC031208|ZNF557|79230|zinc finger protein 557##AK297283|ZNF557|79230|zinc finger protein 557##AK095524|ZNF557|79230|zinc finger protein 557##BC003020|ZNF557|79230|zinc finger protein 557##BC058040|ZNF557|79230|zinc finger protein 557##AK315405|ZNF557|79230|zinc finger protein 557##NM_001044387|ZNF557|79230|zinc finger protein 557##NM_001044388|ZNF557|79230|zinc finger protein 557##NM_024341|ZNF557|79230|zinc finger protein 557##BC047591|INSR|3643|insulin receptor##BC117172|INSR|3643|insulin receptor##X02160|INSR|3643|insulin receptor##NM_000208|INSR|3643|insulin receptor##NM_001079817|INSR|3643|insulin receptor##M10051|INSR|3643|insulin receptor##NM_015318|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18##AB011093|ARHGEF18|23370|Rho/Rac guanine nucleotide exchange factor (GEF) 18	0.09214	0.972502	CTCF.p2:1:0.973
chr22	50215246	50215370	reg1016152.p2	3.798	+	AK124962 TSC_hg19_v1_chr22_-_50051168 BC033837 BC048207	-164175	-	AK125256 NM_015381 AK123443 AY358847	-1243147	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	-1330028	+	AF005067 NM_014577	3143	-	AK292428 TSC_hg19_v1_chr22_-_50221332 BC030007 BC047508	5958	-	TSC_hg19_v1_chr22_-_50221517 AK304776	6173	-	AK124962|C22orf34|348645|chromosome 22 open reading frame 34##BC048207|C22orf34|348645|chromosome 22 open reading frame 34##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF005067|BRD1|23774|bromodomain containing 1##NM_014577|BRD1|23774|bromodomain containing 1##AK292428|BRD1|23774|bromodomain containing 1##BC030007|BRD1|23774|bromodomain containing 1##BC047508|BRD1|23774|bromodomain containing 1##AK304776|BRD1|23774|bromodomain containing 1	0.979918	0.0	denovo_WM_7:-46:0.915
chr2	43396078	43396192	reg1017237.p1	3.798	+	CR457063 DQ891168 DQ894350 TSC_hg19_v1_chr2_-_43019720 Z29481 BC029510 AK295693 NM_012205	-376384	-	AY158687 AB528920 AB083055 BC063549 NM_148962	-404835	-	TSC_hg19_v1_chr2_+_42795855 AK027304 CU678620	-600238	+	TSC_hg19_v1_chr2_-_43453506 DQ893399 DQ896782 X78992 BC005010	57210	-	TSC_hg19_v1_chr2_-_43453736 BC020369	57595	-	TSC_hg19_v1_chr2_-_43453744 NM_006887	57607	-	CR457063|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ891168|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##DQ894350|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##Z29481|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##BC029510|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AK295693|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##NM_012205|HAAO|23498|3-hydroxyanthranilate 3,4-dioxygenase##AY158687|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AB083055|OXER1|165140|oxoeicosanoid (OXE) receptor 1##BC063549|OXER1|165140|oxoeicosanoid (OXE) receptor 1##NM_148962|OXER1|165140|oxoeicosanoid (OXE) receptor 1##AK027304|MTA3|57504|metastasis associated 1 family, member 3##DQ893399|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##DQ896782|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##X78992|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC005010|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##BC020369|ZFP36L2|678|zinc finger protein 36, C3H type-like 2##NM_006887|ZFP36L2|678|zinc finger protein 36, C3H type-like 2	0.882259	0.0	denovo_WM_7:3:0.857
chr9	139779046	139779172	reg1017300.p2	3.798	+	BT009863 CR541914 DQ891577 DQ894770 AB590058 TSC_hg19_v1_chr9_-_139760757 AJ005259 AB002282 AB002283 BC015500 NM_003792 NM_153200	-18371	-	TSC_hg19_v1_chr9_+_139746797 AY358419 NM_206920 BC144258 BC144259	-32300	+	TSC_hg19_v1_chr9_+_139743861 AF161490 AL136644 BC024648 AF164795 AB528207 AM393672 AF393504 CR533481	-35242	+	TSC_hg19_v1_chr9_+_139780967 BX538160 BC043492 NM_021138 AK222961 AK294607 AK298370	1844	+	U12597 BC033810 AK054686 BC032410 TSC_hg19_v1_chr9_+_139780991	1878	+	TSC_hg19_v1_chr9_-_139839068 AK026081	59959	-	BT009863|EDF1|8721|endothelial differentiation-related factor 1##CR541914|EDF1|8721|endothelial differentiation-related factor 1##DQ891577|EDF1|8721|endothelial differentiation-related factor 1##DQ894770|EDF1|8721|endothelial differentiation-related factor 1##AB002282|EDF1|8721|endothelial differentiation-related factor 1##AB002283|EDF1|8721|endothelial differentiation-related factor 1##BC015500|EDF1|8721|endothelial differentiation-related factor 1##NM_003792|EDF1|8721|endothelial differentiation-related factor 1##NM_153200|EDF1|8721|endothelial differentiation-related factor 1##AY358419|MAMDC4|158056|MAM domain containing 4##NM_206920|MAMDC4|158056|MAM domain containing 4##BC144258|MAMDC4|158056|MAM domain containing 4##BC144259|MAMDC4|158056|MAM domain containing 4##AF161490|PHPT1|29085|phosphohistidine phosphatase 1##AL136644|PHPT1|29085|phosphohistidine phosphatase 1##BC024648|PHPT1|29085|phosphohistidine phosphatase 1##AF164795|PHPT1|29085|phosphohistidine phosphatase 1##AM393672|PHPT1|29085|phosphohistidine phosphatase 1##AF393504|PHPT1|29085|phosphohistidine phosphatase 1##CR533481|PHPT1|29085|phosphohistidine phosphatase 1##BX538160|TRAF2|7186|TNF receptor-associated factor 2##BC043492|TRAF2|7186|TNF receptor-associated factor 2##NM_021138|TRAF2|7186|TNF receptor-associated factor 2##AK222961|TRAF2|7186|TNF receptor-associated factor 2##AK294607|TRAF2|7186|TNF receptor-associated factor 2##AK298370|TRAF2|7186|TNF receptor-associated factor 2##BC033810|TRAF2|7186|TNF receptor-associated factor 2##AK054686|TRAF2|7186|TNF receptor-associated factor 2##BC032410|TRAF2|7186|TNF receptor-associated factor 2##AK026081|FBXW5|54461|F-box and WD repeat domain containing 5	1.661975	0.0	denovo_WM_7:76:0.276	denovo_WM_7:77:0.281	denovo_WM_7:-87:0.249	denovo_WM_7:-89:0.623
chrX	21273342	21273503	reg1011048.p1	3.798	+	TSC_hg19_v1_chrX_-_20285141 AK294373	-988258	-	TSC_hg19_v1_chrX_-_20285001 AB208933	-988465	-	AB102662 L07599 AB384785 BC096301 BC096302 BC096303 NM_004586 U08316 AK313932	-988692	-	TSC_hg19_v1_chrX_+_21392535 NM_001168647 NM_001168648 NM_001168649 NM_014927 AB020709 AK294728	119086	+	BC109031 AK092279 AX747450 NM_153270	403009	-	BC005948 AF129505 AJ250584 NM_014332 AK312134	502795	-	AK294373|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB208933|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AB102662|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##L07599|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096301|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096302|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##BC096303|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_004586|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##U08316|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##AK313932|RPS6KA3|6197|ribosomal protein S6 kinase, 90kDa, polypeptide 3##NM_001168647|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168648|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_001168649|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##NM_014927|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AB020709|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##AK294728|CNKSR2|22866|connector enhancer of kinase suppressor of Ras 2##BC109031|KLHL34|257240|kelch-like 34 (Drosophila)##AK092279|KLHL34|257240|kelch-like 34 (Drosophila)##NM_153270|KLHL34|257240|kelch-like 34 (Drosophila)##BC005948|SMPX|23676|small muscle protein, X-linked##AF129505|SMPX|23676|small muscle protein, X-linked##AJ250584|SMPX|23676|small muscle protein, X-linked##NM_014332|SMPX|23676|small muscle protein, X-linked##AK312134|SMPX|23676|small muscle protein, X-linked	0.0	0.0	
chr10	87018610	87018748	reg1016026.p1	3.797	+	TSC_hg19_v1_chr10_+_86184685 AK294321	-833984	+	AB032954 TSC_hg19_v1_chr10_+_86131668	-887061	+	TSC_hg19_v1_chr10_+_86088344 NM_018999 AK298966 BC030528	-930285	+	TSC_hg19_v1_chr10_-_88126251 AK293104 AK127168 BC039263 NM_017551	1107584	-	AB463350 TSC_hg19_v1_chr10_-_88281503 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426838 AF479418 AB426836 AK290138	1262815	-	TSC_hg19_v1_chr10_-_88281532 BC150269 D87450 AB065003 NM_015045	1262851	-	AK294321|FAM190B|54462|family with sequence similarity 190, member B##AB032954|FAM190B|54462|family with sequence similarity 190, member B##NM_018999|FAM190B|54462|family with sequence similarity 190, member B##AK298966|FAM190B|54462|family with sequence similarity 190, member B##BC030528|FAM190B|54462|family with sequence similarity 190, member B##AK293104|GRID1|2894|glutamate receptor, ionotropic, delta 1##AK127168|GRID1|2894|glutamate receptor, ionotropic, delta 1##BC039263|GRID1|2894|glutamate receptor, ionotropic, delta 1##NM_017551|GRID1|2894|glutamate receptor, ionotropic, delta 1##AB426821|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426822|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426823|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426824|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426825|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426826|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426827|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426828|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426829|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426830|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426831|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426832|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426833|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426834|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426835|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426837|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426838|WAPAL|23063|wings apart-like homolog (Drosophila)##AF479418|WAPAL|23063|wings apart-like homolog (Drosophila)##AB426836|WAPAL|23063|wings apart-like homolog (Drosophila)##AK290138|WAPAL|23063|wings apart-like homolog (Drosophila)##BC150269|WAPAL|23063|wings apart-like homolog (Drosophila)##D87450|WAPAL|23063|wings apart-like homolog (Drosophila)##AB065003|WAPAL|23063|wings apart-like homolog (Drosophila)##NM_015045|WAPAL|23063|wings apart-like homolog (Drosophila)	0.0	0.0	
chr11	10955411	10955515	reg1014798.p1	3.797	+	TSC_hg19_v1_chr11_+_10879769 BC014360 BC036635	-75677	+	AK123233 TSC_hg19_v1_chr11_-_10879580 AK315033 BC047754 AF205600 BC017803 BC038508 NM_001143667 NM_021211	-75945	-	TSC_hg19_v1_chr11_+_10830752 AK056207	-124666	+	AK055111 BC037341 TSC_hg19_v1_chr11_-_11643550 BC060864 NM_198516	688115	-	TSC_hg19_v1_chr11_+_11863036 AK127264 NM_017944	907553	+	TSC_hg19_v1_chr11_+_11863515 AK309240 CR749502	908028	+	BC014360|LOC729013|729013|uncharacterized LOC729013##BC036635|LOC729013|729013|uncharacterized LOC729013##AK123233|ZBED5|58486|zinc finger, BED-type containing 5##AK315033|ZBED5|58486|zinc finger, BED-type containing 5##BC047754|ZBED5|58486|zinc finger, BED-type containing 5##AF205600|ZBED5|58486|zinc finger, BED-type containing 5##BC017803|ZBED5|58486|zinc finger, BED-type containing 5##BC038508|ZBED5|58486|zinc finger, BED-type containing 5##NM_001143667|ZBED5|58486|zinc finger, BED-type containing 5##NM_021211|ZBED5|58486|zinc finger, BED-type containing 5##AK055111|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC037341|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##BC060864|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##NM_198516|GALNTL4|374378|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4##AK127264|USP47|55031|ubiquitin specific peptidase 47##NM_017944|USP47|55031|ubiquitin specific peptidase 47##AK309240|USP47|55031|ubiquitin specific peptidase 47	0.0	0.0	
chr1	182809347	182809468	reg1016091.p2	3.797	+	TSC_hg19_v1_chr1_+_182808481 AK308165 BC137136 BC144494 BC014246 AF086352 BC025245 BC008773 L13848	-897	+	TSC_hg19_v1_chr1_+_182808450 NM_001357 AK226102	-950	+	BC034966 AK313225 BC058003 TSC_hg19_v1_chr1_+_182758907 AK297017 AK301068 AY336748	-50516	+	TSC_hg19_v1_chr1_-_182922024 AF288397 HQ258630 BC026086	112729	-	BC050305 BC132764 BC144326 AF288398 NM_030933 BC026084	113174	-	TSC_hg19_v1_chr1_+_182992572 BC067813 NM_002293 J03202	183097	+	AK308165|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##BC137136|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##BC144494|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##BC014246|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##AF086352|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##BC025245|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##BC008773|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##L13848|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##NM_001357|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##AK226102|DHX9|1660|DEAH (Asp-Glu-Ala-His) box polypeptide 9##BC034966|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK313225|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##BC058003|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK297017|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AK301068|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AY336748|NPL|80896|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)##AF288397|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##HQ258630|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC026086|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC050305|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC132764|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC144326|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##AF288398|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##NM_030933|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC026084|SHCBP1L|81626|SHC SH2-domain binding protein 1-like##BC067813|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)##NM_002293|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)##J03202|LAMC1|3915|laminin, gamma 1 (formerly LAMB2)	0.998703	0.0	
chr1	186955129	186955234	reg1011298.p2	3.797	+	NM_024420 TSC_hg19_v1_chr1_+_186798126 AK290336 M68874 M72393 AK302938 BC114340	-157093	+	AB385033 AJ634912 AY462100 CU680666 EU176282 EU176597 L15326 AY151286 M90100 BC013734 AK292167 TSC_hg19_v1_chr1_-_186649556 NM_000963	-305691	-	M33478 NM_002597	-524954	-	AK123024 AB111893 NM_199051 TSC_hg19_v1_chr1_-_190446769	3491554	-	NM_130782 AK292015 BC020632 AK057114 AK315377 AF268036 AF076642	5172422	+	AY643711 NM_001039152	5330940	+	NM_024420|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK290336|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M68874|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##M72393|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AK302938|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##BC114340|PLA2G4A|5321|phospholipase A2, group IVA (cytosolic, calcium-dependent)##AJ634912|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY462100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176282|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##EU176597|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##L15326|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AY151286|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M90100|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##BC013734|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##AK292167|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##NM_000963|PTGS2|5743|prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)##M33478|PDC|5132|phosducin##NM_002597|PDC|5132|phosducin##AK123024|FAM5C|339479|family with sequence similarity 5, member C##AB111893|FAM5C|339479|family with sequence similarity 5, member C##NM_199051|FAM5C|339479|family with sequence similarity 5, member C##NM_130782|RGS18|64407|regulator of G-protein signaling 18##AK292015|RGS18|64407|regulator of G-protein signaling 18##BC020632|RGS18|64407|regulator of G-protein signaling 18##AK057114|RGS18|64407|regulator of G-protein signaling 18##AK315377|RGS18|64407|regulator of G-protein signaling 18##AF268036|RGS18|64407|regulator of G-protein signaling 18##AF076642|RGS18|64407|regulator of G-protein signaling 18##AY643711|RGS21|431704|regulator of G-protein signaling 21##NM_001039152|RGS21|431704|regulator of G-protein signaling 21	0.0	0.040993	
chr13	49560131	49560233	reg1009314.p1	3.797	+	TSC_hg19_v1_chr13_+_49550955 BC136617 BC144301 BC132812	-9198	+	TSC_hg19_v1_chr13_+_49550938 BX640739	-9257	+	TSC_hg19_v1_chr13_+_49550791 BC051029	-9461	+	TSC_hg19_v1_chr13_+_49684452 AK302415 AJ749707 NM_014923 AB023187 BC107793	124274	+	AB463896 AY603964 NM_001507	234290	+	NM_001193478 NM_030911 TSC_hg19_v1_chr13_+_49822076 BC022801 BC092434 AK312835 BC032889 BC070238 AK297400 BC009562 AY027525 BC048092 BC125202 BC125203	261907	+	BC136617|FNDC3A|22862|fibronectin type III domain containing 3A##BC144301|FNDC3A|22862|fibronectin type III domain containing 3A##BC132812|FNDC3A|22862|fibronectin type III domain containing 3A##BX640739|FNDC3A|22862|fibronectin type III domain containing 3A##BC051029|FNDC3A|22862|fibronectin type III domain containing 3A##AK302415|FNDC3A|22862|fibronectin type III domain containing 3A##AJ749707|FNDC3A|22862|fibronectin type III domain containing 3A##NM_014923|FNDC3A|22862|fibronectin type III domain containing 3A##AB023187|FNDC3A|22862|fibronectin type III domain containing 3A##BC107793|FNDC3A|22862|fibronectin type III domain containing 3A##AY603964|MLNR|2862|motilin receptor##NM_001507|MLNR|2862|motilin receptor##NM_001193478|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##NM_030911|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC022801|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC092434|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK312835|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC032889|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC070238|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AK297400|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC009562|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##AY027525|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC048092|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125202|CDADC1|81602|cytidine and dCMP deaminase domain containing 1##BC125203|CDADC1|81602|cytidine and dCMP deaminase domain containing 1	0.0	0.0	
chr14	61852046	61852156	reg1015533.p1	3.797	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-63574	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-103579	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-103907	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	310089	+	FJ790247 NM_001243084	312238	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	377018	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.200818	0.0	
chr16	81458416	81458546	reg1013785.p1	3.797	+	BC044840 TSC_hg19_v1_chr16_+_81348606 HQ257897	-109831	+	TSC_hg19_v1_chr16_+_81348566 AK095378 NM_022041 AF291673	-109912	+	AK296011 AF294900 AK001592 BC022269 NM_017429 BC126210 BC126212 HQ258298	-186078	+	NM_198390 TSC_hg19_v1_chr16_+_81478778 AK096598 AB462985 AB051481	20352	+	AY172689 NM_030629	70472	+	TSC_hg19_v1_chr16_+_81812898 NM_002661	354416	+	BC044840|GAN|8139|gigaxonin##HQ257897|GAN|8139|gigaxonin##AK095378|GAN|8139|gigaxonin##NM_022041|GAN|8139|gigaxonin##AF291673|GAN|8139|gigaxonin##AK296011|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AF294900|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##AK001592|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC022269|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##NM_017429|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC126210|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##BC126212|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##HQ258298|BCMO1|53630|beta-carotene 15,15'-monooxygenase 1##NM_198390|CMIP|80790|c-Maf inducing protein##AK096598|CMIP|80790|c-Maf inducing protein##AB051481|CMIP|80790|c-Maf inducing protein##AY172689|CMIP|80790|c-Maf inducing protein##NM_030629|CMIP|80790|c-Maf inducing protein##NM_002661|PLCG2|5336|phospholipase C, gamma 2 (phosphatidylinositol-specific)	0.99567	0.0	denovo_WM_7:-7:0.441	denovo_WM_7:-8:0.441
chr17	43434722	43434847	reg1016813.p1	3.797	+	TSC_hg19_v1_chr17_-_43394387 BC035576 BC022296 AK290203 AK313085 NM_003954	-40409	-	BC028124 AF433663 AK302184 AK058143 NM_152343	-95329	-	TSC_hg19_v1_chr17_+_43325300 AK311429	-109480	+	TSC_hg19_v1_chr17_-_43487753 AK092891 AX747793 AK300880	52966	-	TSC_hg19_v1_chr17_-_43503000 AK125535 NM_199282	68217	-	TSC_hg19_v1_chr17_-_43510237 AK290650	75443	-	BC035576|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC022296|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK290203|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##AK313085|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##NM_003954|MAP3K14|9020|mitogen-activated protein kinase kinase kinase 14##BC028124|C17orf46|124783|chromosome 17 open reading frame 46##AF433663|C17orf46|124783|chromosome 17 open reading frame 46##AK302184|C17orf46|124783|chromosome 17 open reading frame 46##AK058143|C17orf46|124783|chromosome 17 open reading frame 46##NM_152343|C17orf46|124783|chromosome 17 open reading frame 46##AK311429|LOC100133991|100133991|uncharacterized LOC100133991##AK092891|ARHGAP27|201176|Rho GTPase activating protein 27##AK300880|ARHGAP27|201176|Rho GTPase activating protein 27##AK125535|ARHGAP27|201176|Rho GTPase activating protein 27##NM_199282|ARHGAP27|201176|Rho GTPase activating protein 27##AK290650|ARHGAP27|201176|Rho GTPase activating protein 27	0.990819	0.0	denovo_WM_7:-30:0.237	denovo_WM_7:-31:0.237	denovo_WM_7:-32:0.237	denovo_WM_7:-33:0.237
chr19	16656700	16656785	reg1013113.p2	3.797	+	TSC_hg19_v1_chr19_-_16653256 NM_006387	-3479	-	BC021294 TSC_hg19_v1_chr19_-_16653249	-3494	-	TSC_hg19_v1_chr19_-_16653240 AK296883	-3503	-	TSC_hg19_v1_chr19_-_16683205 BC062562 NM_024881	26454	-	TSC_hg19_v1_chr19_+_16683381 AK094229	26655	+	AK313778 BC110430 TSC_hg19_v1_chr19_-_16739013 BC068564 NM_004831	82258	-	NM_006387|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##BC021294|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##AK296883|CHERP|10523|calcium homeostasis endoplasmic reticulum protein##BC062562|SLC35E1|79939|solute carrier family 35, member E1##NM_024881|SLC35E1|79939|solute carrier family 35, member E1##AK313778|MED26|9441|mediator complex subunit 26##BC110430|MED26|9441|mediator complex subunit 26##NM_004831|MED26|9441|mediator complex subunit 26	1.984346	0.0	denovo_WM_7:61:0.531	denovo_WM_7:62:0.301	denovo_WM_7:76:0.235	denovo_WM_7:77:0.301	denovo_WM_7:78:0.374
chr19	39896812	39896923	reg1015562.p1	3.797	+	TSC_hg19_v1_chr19_+_39882046 AL137304 AK000411 AK298014 BC019015 AK092909 AX747802 AK124629 AK316010 AK090877 AK297772 AX746660 AK294667	-14829	+	AK300563 TSC_hg19_v1_chr19_+_39882017 AY729650 NM_017592 AB528726	-14884	+	AK098423 AJ401156 BC000017 NM_019088 TSC_hg19_v1_chr19_-_39881747 AK001985 BC013402 AK294625	-15173	-	TSC_hg19_v1_chr19_+_39897486 AK314042 M92843 NM_003407 BC009693 M63625 EU446714 EU832179 EU832272 CU679443	907	+	TSC_hg19_v1_chr19_+_39899749 AJ227917	2926	+	AK024429 NM_022835	6882	+	AL137304|MED29|55588|mediator complex subunit 29##AK000411|MED29|55588|mediator complex subunit 29##AK298014|MED29|55588|mediator complex subunit 29##BC019015|MED29|55588|mediator complex subunit 29##AK092909|MED29|55588|mediator complex subunit 29##AK124629|MED29|55588|mediator complex subunit 29##AK316010|MED29|55588|mediator complex subunit 29##AK090877|MED29|55588|mediator complex subunit 29##AK297772|MED29|55588|mediator complex subunit 29##AK294667|MED29|55588|mediator complex subunit 29##AK300563|MED29|55588|mediator complex subunit 29##AY729650|MED29|55588|mediator complex subunit 29##NM_017592|MED29|55588|mediator complex subunit 29##AK098423|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AJ401156|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##BC000017|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##NM_019088|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AK001985|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##BC013402|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AK294625|PAF1|54623|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)##AK314042|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##M92843|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##NM_003407|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##BC009693|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##M63625|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##EU446714|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##EU832179|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##EU832272|ZFP36|7538|zinc finger protein 36, C3H type, homolog (mouse)##AK024429|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2##NM_022835|PLEKHG2|64857|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	1.093631	0.0	denovo_WM_7:-32:0.814
chr19	44280279	44280398	reg1011810.p1	3.797	+	TSC_hg19_v1_chr19_-_44259117 NM_019108	-21210	-	TSC_hg19_v1_chr19_-_44259074 AK022948	-21245	-	TSC_hg19_v1_chr19_-_44259063 AK309830 BC008869 AL136606	-21318	-	AB128983 AB128984 AB128985 AF000972 AF022150 BT007426 CU677271 DQ891493 DQ894684 BC015337 AF395661 TSC_hg19_v1_chr19_-_44285137 AF033021	4737	-	TSC_hg19_v1_chr19_-_44285437 AF022797 NM_002250	5102	-	CU691254 AY358719 BC057816 AK301693 NM_001031749	26230	-	NM_019108|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK022948|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AK309830|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##BC008869|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AL136606|SMG9|56006|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)##AB128983|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128984|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AB128985|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF000972|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022150|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BT007426|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ891493|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##DQ894684|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##BC015337|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF395661|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF033021|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AF022797|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##NM_002250|KCNN4|3783|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4##AY358719|LYPD5|284348|LY6/PLAUR domain containing 5##BC057816|LYPD5|284348|LY6/PLAUR domain containing 5##AK301693|LYPD5|284348|LY6/PLAUR domain containing 5##NM_001031749|LYPD5|284348|LY6/PLAUR domain containing 5	1.991096	0.0	denovo_WM_7:-35:0.916	denovo_WM_7:-50:0.947
chr2	95693945	95694071	reg1016893.p1	3.797	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	-2526	+	AK097438 BC021716 NM_144705 AK296678 CU692394	-156758	+	TSC_hg19_v1_chr2_-_91847997 BC030764	-3846005	-	TSC_hg19_v1_chr2_-_95787546 CU680814 DQ892620 DQ895860 AK058160 AK295812	93534	-	AB049940 TSC_hg19_v1_chr2_-_95787749 BC014172 NM_031902	93704	-	AK027363 NM_032788	131254	-	BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##DQ892620|MRPS5|64969|mitochondrial ribosomal protein S5##DQ895860|MRPS5|64969|mitochondrial ribosomal protein S5##AK058160|MRPS5|64969|mitochondrial ribosomal protein S5##AB049940|MRPS5|64969|mitochondrial ribosomal protein S5##BC014172|MRPS5|64969|mitochondrial ribosomal protein S5##NM_031902|MRPS5|64969|mitochondrial ribosomal protein S5##AK027363|ZNF514|84874|zinc finger protein 514##NM_032788|ZNF514|84874|zinc finger protein 514	0.997259	0.0	
chr3	61548786	61548925	reg1011483.p1	3.797	+	L09247 AB385117 TSC_hg19_v1_chr3_+_61548071	-879	+	BC047734 TSC_hg19_v1_chr3_+_61547294	-1569	+	TSC_hg19_v1_chr3_+_61547242 BC036018 BC048961 NM_002841	-1644	+	AB055764 TSC_hg19_v1_chr3_-_61728812	179956	-	TSC_hg19_v1_chr3_+_62304696 AF236158 AK313915 AK310431	755851	+	BC017772 NM_020685	756540	+	L09247|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC047734|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC036018|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##BC048961|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##NM_002841|PTPRG|5793|protein tyrosine phosphatase, receptor type, G##AF236158|C3orf14|57415|chromosome 3 open reading frame 14##AK313915|C3orf14|57415|chromosome 3 open reading frame 14##AK310431|C3orf14|57415|chromosome 3 open reading frame 14##BC017772|C3orf14|57415|chromosome 3 open reading frame 14##NM_020685|C3orf14|57415|chromosome 3 open reading frame 14	0.0	0.0	
chr4	11473635	11473705	reg1018719.p2	3.797	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-43138	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-787269	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-1014660	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	2012281	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	2012305	-	AB463932 AF009801 EU446467 BC111966 NM_001189	2072405	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	0.0	0.0	
chr4	8164425	8164518	reg1017135.p1	3.797	+	DQ413176 AJ748600 AJ748601 TSC_hg19_v1_chr4_-_8160541 BC122567 AK130044 AK094754 BC067214 NM_001130083 NM_001130084 NM_001130085 NM_001130086 NM_001130087 NM_001130088 NM_032432	-3937	-	TSC_hg19_v1_chr4_-_8129388 AK301060	-35086	-	TSC_hg19_v1_chr4_-_8073714 AK094798	-90755	-	TSC_hg19_v1_chr4_+_8201038 BC030283 AK074093 NM_018986 BC068094 AK074402 AK126165 BC131785	36561	+	TSC_hg19_v1_chr4_+_8271480 NM_053044 AY040094 BC034390 BC035717 AY280665 AY280666 AB528940 DQ891188 DQ894371	107104	+	TSC_hg19_v1_chr4_-_8430196 AK313242	265730	-	DQ413176|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748600|ABLIM2|84448|actin binding LIM protein family, member 2##AJ748601|ABLIM2|84448|actin binding LIM protein family, member 2##BC122567|ABLIM2|84448|actin binding LIM protein family, member 2##AK130044|ABLIM2|84448|actin binding LIM protein family, member 2##AK094754|ABLIM2|84448|actin binding LIM protein family, member 2##BC067214|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130083|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130084|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130085|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130086|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130087|ABLIM2|84448|actin binding LIM protein family, member 2##NM_001130088|ABLIM2|84448|actin binding LIM protein family, member 2##NM_032432|ABLIM2|84448|actin binding LIM protein family, member 2##AK301060|ABLIM2|84448|actin binding LIM protein family, member 2##AK094798|ABLIM2|84448|actin binding LIM protein family, member 2##BC030283|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074093|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##NM_018986|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC068094|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK074402|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##AK126165|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##BC131785|SH3TC1|54436|SH3 domain and tetratricopeptide repeats 1##NM_053044|HTRA3|94031|HtrA serine peptidase 3##AY040094|HTRA3|94031|HtrA serine peptidase 3##BC034390|HTRA3|94031|HtrA serine peptidase 3##BC035717|HTRA3|94031|HtrA serine peptidase 3##AY280665|HTRA3|94031|HtrA serine peptidase 3##AY280666|HTRA3|94031|HtrA serine peptidase 3##DQ891188|HTRA3|94031|HtrA serine peptidase 3##DQ894371|HTRA3|94031|HtrA serine peptidase 3##AK313242|ACOX3|8310|acyl-CoA oxidase 3, pristanoyl	1.117445	0.0	
chr5	112053485	112053624	reg1015963.p1	3.797	+	TSC_hg19_v1_chr5_+_112043199 NM_001127511 AK294544	-10343	+	AB030240 BC114942 BC114632 TSC_hg19_v1_chr5_-_111754966 BC031042 NM_022140	-298681	-	TSC_hg19_v1_chr5_+_111496560 AB002437	-556985	+	NM_000038 NM_001127510 TSC_hg19_v1_chr5_+_112073584 BC034955 BC056268 AB210001	20019	+	NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135 TSC_hg19_v1_chr5_+_112196975	143375	+	TSC_hg19_v1_chr5_+_112196983 AK311803 BC000186 X12791 AK313576 BC017830 BC010947 BC018669 AB587423	143470	+	NM_001127511|APC|324|adenomatous polyposis coli##AK294544|APC|324|adenomatous polyposis coli##AB030240|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114942|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC114632|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##BC031042|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##NM_022140|EPB41L4A|64097|erythrocyte membrane protein band 4.1 like 4A##AB002437|EPB41L4A-AS1|114915|EPB41L4A antisense RNA 1 (non-protein coding)##NM_000038|APC|324|adenomatous polyposis coli##NM_001127510|APC|324|adenomatous polyposis coli##BC034955|APC|324|adenomatous polyposis coli##BC056268|APC|324|adenomatous polyposis coli##AB210001|APC|324|adenomatous polyposis coli##NM_001204193|SRP19|6728|signal recognition particle 19kDa##NM_001204194|SRP19|6728|signal recognition particle 19kDa##NM_001204196|SRP19|6728|signal recognition particle 19kDa##NM_001204199|SRP19|6728|signal recognition particle 19kDa##NM_003135|SRP19|6728|signal recognition particle 19kDa##AK311803|SRP19|6728|signal recognition particle 19kDa##BC000186|SRP19|6728|signal recognition particle 19kDa##X12791|SRP19|6728|signal recognition particle 19kDa##BC017830|SRP19|6728|signal recognition particle 19kDa##BC010947|SRP19|6728|signal recognition particle 19kDa##BC018669|SRP19|6728|signal recognition particle 19kDa	2.931226	0.0	denovo_WM_7:35:0.665	denovo_WM_7:41:0.310	denovo_WM_7:53:0.325	denovo_WM_7:57:0.451	denovo_WM_7:72:0.609
chr7	39374013	39374146	reg1015790.p2	3.797	+	NM_001166018 NM_007252	-356471	+	HQ257912 TSC_hg19_v1_chr7_-_38948792 BX648347 BC044851 AK314556 NM_014396 NM_080631 U87309	-425286	-	TSC_hg19_v1_chr7_-_38671019 X81438 AF034996 NM_001635 NM_139316	-703002	-	TSC_hg19_v1_chr7_+_39606002 AK314937 NM_020192 AK293511 AF226046 BC022043 CR457198 DQ892829 DQ896074 DQ896075	231890	+	TSC_hg19_v1_chr7_+_39663159 NM_005402	289087	+	TSC_hg19_v1_chr7_+_39663204 BC039858	289132	+	NM_001166018|POU6F2|11281|POU class 6 homeobox 2##NM_007252|POU6F2|11281|POU class 6 homeobox 2##HQ257912|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BX648347|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##BC044851|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##AK314556|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_014396|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##NM_080631|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##U87309|VPS41|27072|vacuolar protein sorting 41 homolog (S. cerevisiae)##X81438|AMPH|273|amphiphysin##AF034996|AMPH|273|amphiphysin##NM_001635|AMPH|273|amphiphysin##NM_139316|AMPH|273|amphiphysin##AK314937|YAE1D1|57002|Yae1 domain containing 1##NM_020192|YAE1D1|57002|Yae1 domain containing 1##AF226046|YAE1D1|57002|Yae1 domain containing 1##BC022043|YAE1D1|57002|Yae1 domain containing 1##CR457198|YAE1D1|57002|Yae1 domain containing 1##DQ892829|YAE1D1|57002|Yae1 domain containing 1##DQ896074|YAE1D1|57002|Yae1 domain containing 1##DQ896075|YAE1D1|57002|Yae1 domain containing 1##NM_005402|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)##BC039858|RALA|5898|v-ral simian leukemia viral oncogene homolog A (ras related)	0.978919	0.0	denovo_WM_7:40:0.715	denovo_WM_7:41:0.251
chr8	99223825	99223926	reg1012119.p1	3.797	+	BC011529 NM_015029	-93808	+	TSC_hg19_v1_chr8_+_99129543 NM_001145860 NM_001145861 X99302 AK291434	-94337	+	BC010280 TSC_hg19_v1_chr8_-_99129395 BC093059 BC012592 NM_005836 X95384	-94474	-	BC132687 BC144055 TSC_hg19_v1_chr8_-_99306600 AK024017 NM_024759	82724	-	BC034778 NM_020697 BC027932 TSC_hg19_v1_chr8_+_99439361 AB032970	215471	+	CU679773 AB528979 U60206 AK291837 TSC_hg19_v1_chr8_-_99837906 AK075229 BC010640 AK307787 AK312660 NM_006281 U26424	613972	-	BC011529|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_015029|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145860|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##NM_001145861|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##X99302|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##AK291434|POP1|10940|processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)##BC010280|HRSP12|10247|heat-responsive protein 12##BC093059|HRSP12|10247|heat-responsive protein 12##BC012592|HRSP12|10247|heat-responsive protein 12##NM_005836|HRSP12|10247|heat-responsive protein 12##X95384|HRSP12|10247|heat-responsive protein 12##BC132687|NIPAL2|79815|NIPA-like domain containing 2##BC144055|NIPAL2|79815|NIPA-like domain containing 2##AK024017|NIPAL2|79815|NIPA-like domain containing 2##NM_024759|NIPAL2|79815|NIPA-like domain containing 2##BC034778|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##NM_020697|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##BC027932|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##AB032970|KCNS2|3788|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2##U60206|STK3|6788|serine/threonine kinase 3##AK291837|STK3|6788|serine/threonine kinase 3##AK075229|STK3|6788|serine/threonine kinase 3##BC010640|STK3|6788|serine/threonine kinase 3##AK307787|STK3|6788|serine/threonine kinase 3##AK312660|STK3|6788|serine/threonine kinase 3##NM_006281|STK3|6788|serine/threonine kinase 3##U26424|STK3|6788|serine/threonine kinase 3	0.0	0.0	
chr9	121456100	121456246	reg1014811.p1	3.797	+	TSC_hg19_v1_chr9_+_120466680 U93091 BC025294 AK226155 U88880 BC117422 BC143841 AB445638	-989486	+	TSC_hg19_v1_chr9_+_120466621 AK293068 AK303730	-989559	+	TSC_hg19_v1_chr9_+_120466459 NM_138554 AK290053	-989709	+	BC071702 BC065196 AF027734 BC021560 AK293649 TSC_hg19_v1_chr9_-_122131727 NM_014618	675485	-	AB489151 BC136275 BC143732 BC143734 BC143753 BC143755 BC143760 BC143762 BC143764 TSC_hg19_v1_chr9_-_123342438 AF448860 AB046853 BC146782 BC019577 BX537421 AL833481 BX537759 AK122913 BX537708 NM_001011649 NM_018249	1886180	-	TSC_hg19_v1_chr9_-_123476749 AY358370 AK295380 NM_001080497	2020544	-	U93091|TLR4|7099|toll-like receptor 4##BC025294|TLR4|7099|toll-like receptor 4##AK226155|TLR4|7099|toll-like receptor 4##U88880|TLR4|7099|toll-like receptor 4##BC117422|TLR4|7099|toll-like receptor 4##BC143841|TLR4|7099|toll-like receptor 4##AB445638|TLR4|7099|toll-like receptor 4##AK293068|TLR4|7099|toll-like receptor 4##AK303730|TLR4|7099|toll-like receptor 4##NM_138554|TLR4|7099|toll-like receptor 4##AK290053|TLR4|7099|toll-like receptor 4##BC071702|DBC1|1620|deleted in bladder cancer 1##BC065196|DBC1|1620|deleted in bladder cancer 1##AF027734|DBC1|1620|deleted in bladder cancer 1##BC021560|DBC1|1620|deleted in bladder cancer 1##AK293649|DBC1|1620|deleted in bladder cancer 1##NM_014618|DBC1|1620|deleted in bladder cancer 1##BC136275|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143732|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143734|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143753|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143755|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143760|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143762|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143764|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AF448860|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AB046853|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC146782|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC019577|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537421|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AL833481|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537759|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AK122913|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537708|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_001011649|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_018249|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AY358370|MEGF9|1955|multiple EGF-like-domains 9##AK295380|MEGF9|1955|multiple EGF-like-domains 9##NM_001080497|MEGF9|1955|multiple EGF-like-domains 9	0.0	0.0	
chr9	6598352	6598487	reg1017673.p1	3.797	+	TSC_hg19_v1_chr9_+_6413338 AF274049 AB071698 EU176286 EU176602 AB385208	-185014	+	TSC_hg19_v1_chr9_+_6413200 AK308433	-185222	+	TSC_hg19_v1_chr9_+_6413139 BC028397 NM_152896	-185275	+	BC111993 BC111995 M63635 D90239 M64590 AK314156 NM_000170	47208	-	AK310439 NM_001146696	122443	+	TSC_hg19_v1_chr9_+_6757640 BC060771 NM_001146694 NM_001146695 NM_015061 BC053678	159248	+	AF274049|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AB071698|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176286|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##EU176602|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##AK308433|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC028397|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##NM_152896|UHRF2|115426|ubiquitin-like with PHD and ring finger domains 2##BC111993|GLDC|2731|glycine dehydrogenase (decarboxylating)##BC111995|GLDC|2731|glycine dehydrogenase (decarboxylating)##M63635|GLDC|2731|glycine dehydrogenase (decarboxylating)##D90239|GLDC|2731|glycine dehydrogenase (decarboxylating)##M64590|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK314156|GLDC|2731|glycine dehydrogenase (decarboxylating)##NM_000170|GLDC|2731|glycine dehydrogenase (decarboxylating)##AK310439|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146696|KDM4C|23081|lysine (K)-specific demethylase 4C##BC060771|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146694|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_001146695|KDM4C|23081|lysine (K)-specific demethylase 4C##NM_015061|KDM4C|23081|lysine (K)-specific demethylase 4C##BC053678|KDM4C|23081|lysine (K)-specific demethylase 4C	0.0	0.0	
chr1	10003447	10003554	reg1015625.p1	3.796	+	NM_022787 BC014943 TSC_hg19_v1_chr1_+_10003497 AK026065 AK222920	-4	+	TSC_hg19_v1_chr1_-_10003358 AB060688 BC007240 AK304348 AK312550	-127	-	BC063443 NM_032368	-675	-	TSC_hg19_v1_chr1_+_10003532 AK315640	43	+	BC063013 NM_052960 BC033883 AF399927 AK312027 AY145438 CU687628	53784	+	TSC_hg19_v1_chr1_+_10093015 AB028839 NM_001105562 NM_006048	89515	+	NM_022787|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##BC014943|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK026065|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AK222920|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##AB060688|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC007240|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK304348|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK312550|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##BC063443|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##NM_032368|LZIC|84328|leucine zipper and CTNNBIP1 domain containing##AK315640|NMNAT1|64802|nicotinamide nucleotide adenylyltransferase 1##BC063013|RBP7|116362|retinol binding protein 7, cellular##NM_052960|RBP7|116362|retinol binding protein 7, cellular##BC033883|RBP7|116362|retinol binding protein 7, cellular##AF399927|RBP7|116362|retinol binding protein 7, cellular##AK312027|RBP7|116362|retinol binding protein 7, cellular##AY145438|RBP7|116362|retinol binding protein 7, cellular##AB028839|UBE4B|10277|ubiquitination factor E4B##NM_001105562|UBE4B|10277|ubiquitination factor E4B##NM_006048|UBE4B|10277|ubiquitination factor E4B	0.0	0.011616	
chr17	34906424	34906513	reg1017558.p1	3.796	+	TSC_hg19_v1_chr17_+_34901498 AK290687 AF126964	-4956	+	NM_024835 TSC_hg19_v1_chr17_+_34900798 AK292161 AK024883 AF268387 BC137491	-5665	+	TSC_hg19_v1_chr17_-_34900675 AL049275 BC041980	-5776	-	TSC_hg19_v1_chr17_+_34948329 NM_024308 AK315735 AY358712 BC002731	41820	+	AK292307 NM_024864 BC072411	51583	+	BC084573 TSC_hg19_v1_chr17_-_35293961	387472	-	AK290687|GGNBP2|79893|gametogenetin binding protein 2##AF126964|GGNBP2|79893|gametogenetin binding protein 2##NM_024835|GGNBP2|79893|gametogenetin binding protein 2##AK292161|GGNBP2|79893|gametogenetin binding protein 2##AK024883|GGNBP2|79893|gametogenetin binding protein 2##AF268387|GGNBP2|79893|gametogenetin binding protein 2##BC137491|GGNBP2|79893|gametogenetin binding protein 2##AL049275|DKFZp564H213|440432|uncharacterized LOC440432##BC041980|DKFZp564H213|440432|uncharacterized LOC440432##NM_024308|DHRS11|79154|dehydrogenase/reductase (SDR family) member 11##AK315735|DHRS11|79154|dehydrogenase/reductase (SDR family) member 11##AY358712|DHRS11|79154|dehydrogenase/reductase (SDR family) member 11##BC002731|DHRS11|79154|dehydrogenase/reductase (SDR family) member 11##AK292307|MRM1|79922|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)##NM_024864|MRM1|79922|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)##BC072411|MRM1|79922|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	0.0	0.0	
chr19	35726173	35726310	reg1015640.p2	3.796	+	BC039080 HQ258231 AK098526 NM_152481 BC117457 BC117459	-6637	-	BC009642 TSC_hg19_v1_chr19_+_35646116	-80158	+	TSC_hg19_v1_chr19_+_35645641 AB072911 BC013834 NM_144779 AY358991 BC018798 AF161462 NM_001164605	-80499	+	TSC_hg19_v1_chr19_+_35739294 AK126834	13050	+	TSC_hg19_v1_chr19_+_35739638 NM_015925 NM_205834 NM_205835 BC047376	13373	+	TSC_hg19_v1_chr19_+_35739778 AB527667 AF130366	13538	+	BC039080|FAM187B|148109|family with sequence similarity 187, member B##HQ258231|FAM187B|148109|family with sequence similarity 187, member B##AK098526|FAM187B|148109|family with sequence similarity 187, member B##NM_152481|FAM187B|148109|family with sequence similarity 187, member B##BC117457|FAM187B|148109|family with sequence similarity 187, member B##BC117459|FAM187B|148109|family with sequence similarity 187, member B##BC009642|FXYD5|53827|FXYD domain containing ion transport regulator 5##AB072911|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC013834|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_144779|FXYD5|53827|FXYD domain containing ion transport regulator 5##AY358991|FXYD5|53827|FXYD domain containing ion transport regulator 5##BC018798|FXYD5|53827|FXYD domain containing ion transport regulator 5##AF161462|FXYD5|53827|FXYD domain containing ion transport regulator 5##NM_001164605|FXYD5|53827|FXYD domain containing ion transport regulator 5##AK126834|LSR|51599|lipolysis stimulated lipoprotein receptor##NM_015925|LSR|51599|lipolysis stimulated lipoprotein receptor##NM_205834|LSR|51599|lipolysis stimulated lipoprotein receptor##NM_205835|LSR|51599|lipolysis stimulated lipoprotein receptor##BC047376|LSR|51599|lipolysis stimulated lipoprotein receptor##AF130366|LSR|51599|lipolysis stimulated lipoprotein receptor	0.995728	0.0	
chr5	35230996	35231140	reg1016718.p1	3.796	+	NM_000949	-246	-	M31661 TSC_hg19_v1_chr5_-_35230578 BC059392 AK313270	-491	-	NM_001204314 NM_001204315 NM_001204316 NM_001204317 NM_001204318	-112845	-	BC067761 BC016773 NM_024867 NM_144722 TSC_hg19_v1_chr5_+_35617998 EF553528 AK058124 BC110984	386941	+	BC020717 FJ529208 NM_002185 AK301220 BC067537 BC067538 BC067539 BC067540 BC069999 TSC_hg19_v1_chr5_+_35857012 M29696 AK315251	625965	+	NM_001042625 BC017586 NM_144647	707740	-	NM_000949|PRLR|5618|prolactin receptor##M31661|PRLR|5618|prolactin receptor##BC059392|PRLR|5618|prolactin receptor##AK313270|PRLR|5618|prolactin receptor##NM_001204314|PRLR|5618|prolactin receptor##NM_001204315|PRLR|5618|prolactin receptor##NM_001204316|PRLR|5618|prolactin receptor##NM_001204317|PRLR|5618|prolactin receptor##NM_001204318|PRLR|5618|prolactin receptor##BC067761|SPEF2|79925|sperm flagellar 2##BC016773|SPEF2|79925|sperm flagellar 2##NM_024867|SPEF2|79925|sperm flagellar 2##NM_144722|SPEF2|79925|sperm flagellar 2##EF553528|SPEF2|79925|sperm flagellar 2##AK058124|SPEF2|79925|sperm flagellar 2##BC110984|SPEF2|79925|sperm flagellar 2##BC020717|IL7R|3575|interleukin 7 receptor##FJ529208|IL7R|3575|interleukin 7 receptor##NM_002185|IL7R|3575|interleukin 7 receptor##AK301220|IL7R|3575|interleukin 7 receptor##BC067537|IL7R|3575|interleukin 7 receptor##BC067538|IL7R|3575|interleukin 7 receptor##BC067539|IL7R|3575|interleukin 7 receptor##BC067540|IL7R|3575|interleukin 7 receptor##BC069999|IL7R|3575|interleukin 7 receptor##M29696|IL7R|3575|interleukin 7 receptor##AK315251|IL7R|3575|interleukin 7 receptor##NM_001042625|CAPSL|133690|calcyphosine-like##BC017586|CAPSL|133690|calcyphosine-like##NM_144647|CAPSL|133690|calcyphosine-like	0.997167	0.0	denovo_WM_7:19:0.527	denovo_WM_7:20:0.470
chr1	11994054	11994145	reg1016647.p1	3.795	+	TSC_hg19_v1_chr1_-_11986485 BC035033 AB095933 NM_138346	-7626	-	CR541976 CR542003 BC025785 M25296 NM_002521	-75159	-	AB528342 DQ893115 DQ896389 EU176780 M30262 TSC_hg19_v1_chr1_-_11907841 BC005893 NM_006172	-86308	-	TSC_hg19_v1_chr1_+_11994717 NM_000302	623	+	TSC_hg19_v1_chr1_+_11994779 AK295254 AK294688 AK316285 AK312243 AK299150 M98252 BC016657 AB385110	706	+	NM_001127660 NM_014874 AK289828 TSC_hg19_v1_chr1_+_12040394 AF036536 AK021947 D86987	46234	+	BC035033|KIAA2013|90231|KIAA2013##AB095933|KIAA2013|90231|KIAA2013##NM_138346|KIAA2013|90231|KIAA2013##CR541976|NPPB|4879|natriuretic peptide B##CR542003|NPPB|4879|natriuretic peptide B##BC025785|NPPB|4879|natriuretic peptide B##M25296|NPPB|4879|natriuretic peptide B##NM_002521|NPPB|4879|natriuretic peptide B##DQ893115|NPPA|4878|natriuretic peptide A##DQ896389|NPPA|4878|natriuretic peptide A##EU176780|NPPA|4878|natriuretic peptide A##M30262|NPPA|4878|natriuretic peptide A##BC005893|NPPA|4878|natriuretic peptide A##NM_006172|NPPA|4878|natriuretic peptide A##NM_000302|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK295254|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK294688|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK316285|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK312243|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##AK299150|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##M98252|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##BC016657|PLOD1|5351|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1##NM_001127660|MFN2|9927|mitofusin 2##NM_014874|MFN2|9927|mitofusin 2##AK289828|MFN2|9927|mitofusin 2##AF036536|MFN2|9927|mitofusin 2##AK021947|MFN2|9927|mitofusin 2##D86987|MFN2|9927|mitofusin 2	0.982725	0.0	denovo_WM_7:6:0.497	denovo_WM_7:9:0.314
chr12	104891338	104891494	reg1005339.p1	3.795	+	TSC_hg19_v1_chr12_+_104850989 AF239820 AJ289134 AJ269537 CU680560	-40329	+	TSC_hg19_v1_chr12_+_104850784 AB042326	-40608	+	TSC_hg19_v1_chr12_+_104850778 BC013315	-40645	+	TSC_hg19_v1_chr12_+_105153261 AF131762	261861	+	CU691398 AL136828 EU832572 BC106871 BC106872 AK027838 BC036734 NM_032148	430847	-	TSC_hg19_v1_chr12_+_105380107 NM_152318	488674	+	AF239820|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ289134|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AJ269537|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AB042326|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##BC013315|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AF131762|CHST11|50515|carbohydrate (chondroitin 4) sulfotransferase 11##AL136828|SLC41A2|84102|solute carrier family 41, member 2##EU832572|SLC41A2|84102|solute carrier family 41, member 2##BC106871|SLC41A2|84102|solute carrier family 41, member 2##BC106872|SLC41A2|84102|solute carrier family 41, member 2##AK027838|SLC41A2|84102|solute carrier family 41, member 2##BC036734|SLC41A2|84102|solute carrier family 41, member 2##NM_032148|SLC41A2|84102|solute carrier family 41, member 2##NM_152318|C12orf45|121053|chromosome 12 open reading frame 45	0.0	0.0	
chr1	31896194	31896331	reg1017274.p1	3.795	+	AK093784 AK316357 AX748305 NM_001199039 NM_018565 AK296118	-9575	+	AY094595 NM_178865 TSC_hg19_v1_chr1_+_31886059 AK309409 AK308031 AY358560 BC063006 BC084580 BC126283 BC126285 GQ129287 GQ129288 HQ258415	-10196	+	NM_001199037 AK298512	-13229	+	NM_001204414 NM_022164 TSC_hg19_v1_chr1_+_32042115 AK292770 AK075398 AK296322 AK298382	145841	+	TSC_hg19_v1_chr1_+_32042122 AY358421	145860	+	TSC_hg19_v1_chr1_+_32042144 BC064633 AB050716 AK298038 AF236150 AF205436	145880	+	AK093784|SERINC2|347735|serine incorporator 2##AK316357|SERINC2|347735|serine incorporator 2##NM_001199039|SERINC2|347735|serine incorporator 2##NM_018565|SERINC2|347735|serine incorporator 2##AK296118|SERINC2|347735|serine incorporator 2##AY094595|SERINC2|347735|serine incorporator 2##NM_178865|SERINC2|347735|serine incorporator 2##AK309409|SERINC2|347735|serine incorporator 2##AK308031|SERINC2|347735|serine incorporator 2##AY358560|SERINC2|347735|serine incorporator 2##BC063006|SERINC2|347735|serine incorporator 2##BC084580|SERINC2|347735|serine incorporator 2##BC126283|SERINC2|347735|serine incorporator 2##BC126285|SERINC2|347735|serine incorporator 2##GQ129287|SERINC2|347735|serine incorporator 2##GQ129288|SERINC2|347735|serine incorporator 2##HQ258415|SERINC2|347735|serine incorporator 2##NM_001199037|SERINC2|347735|serine incorporator 2##AK298512|SERINC2|347735|serine incorporator 2##NM_001204414|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##NM_022164|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK292770|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK075398|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK296322|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK298382|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AY358421|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##BC064633|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AB050716|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AK298038|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AF236150|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1##AF205436|TINAGL1|64129|tubulointerstitial nephritis antigen-like 1	0.346437	0.0	denovo_WM_7:-26:0.221
chr14	103274259	103274425	reg1010182.p2	3.795	+	TSC_hg19_v1_chr14_+_103243854 AK303172 U15637 BX247977	-30442	+	TSC_hg19_v1_chr14_+_103243821 NM_001199427 NM_003300 NM_145725 NM_145726 U21092	-30523	+	TSC_hg19_v1_chr14_+_103059100 AB464145 AF155595	-215181	+	BC029948 NM_030943 TSC_hg19_v1_chr14_+_103388999 AF328788 AY358468	114656	+	TSC_hg19_v1_chr14_-_103430941 BX248752	156616	-	AB384568 TSC_hg19_v1_chr14_-_103523568	249199	-	AK303172|TRAF3|7187|TNF receptor-associated factor 3##U15637|TRAF3|7187|TNF receptor-associated factor 3##BX247977|TRAF3|7187|TNF receptor-associated factor 3##NM_001199427|TRAF3|7187|TNF receptor-associated factor 3##NM_003300|TRAF3|7187|TNF receptor-associated factor 3##NM_145725|TRAF3|7187|TNF receptor-associated factor 3##NM_145726|TRAF3|7187|TNF receptor-associated factor 3##U21092|TRAF3|7187|TNF receptor-associated factor 3##AF155595|RCOR1|23186|REST corepressor 1##BC029948|AMN|81693|amnionless homolog (mouse)##NM_030943|AMN|81693|amnionless homolog (mouse)##AF328788|AMN|81693|amnionless homolog (mouse)##AY358468|AMN|81693|amnionless homolog (mouse)##BX248752|CDC42BPB|9578|CDC42 binding protein kinase beta (DMPK-like)	0.0	0.0	
chr17	27054171	27054351	reg1009511.p1	3.795	+	NM_001160407	-313	-	EU831756 EU831834 TSC_hg19_v1_chr17_-_27053250 BC014072 NM_138463	-1073	-	TSC_hg19_v1_chr17_+_27047009 NM_000984 U43701 AK130965 AK312123 BC058041 U37230 BC014459 U02032	-7253	+	BC112240 BC113705 AK301429 AY242354 AY267371 HQ258347 NM_178170	1553	+	TSC_hg19_v1_chr17_+_27071025 NM_004295 BC001769 X80200 AK300804 AY937222 AY937223 AY937224 AY937225 AB529167 DQ892825 DQ896071 CU674876 AF082185	16808	+	TSC_hg19_v1_chr17_-_27139467 AK095569	85186	-	NM_001160407|TLCD1|116238|TLC domain containing 1##EU831756|TLCD1|116238|TLC domain containing 1##EU831834|TLCD1|116238|TLC domain containing 1##BC014072|TLCD1|116238|TLC domain containing 1##NM_138463|TLCD1|116238|TLC domain containing 1##NM_000984|RPL23A|6147|ribosomal protein L23a##U43701|RPL23A|6147|ribosomal protein L23a##AK130965|RPL23A|6147|ribosomal protein L23a##AK312123|RPL23A|6147|ribosomal protein L23a##BC058041|RPL23A|6147|ribosomal protein L23a##U37230|RPL23A|6147|ribosomal protein L23a##BC014459|RPL23A|6147|ribosomal protein L23a##U02032|RPL23A|6147|ribosomal protein L23a##BC112240|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##BC113705|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AK301429|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY242354|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##AY267371|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##HQ258347|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_178170|NEK8|284086|NIMA (never in mitosis gene a)- related kinase 8##NM_004295|TRAF4|9618|TNF receptor-associated factor 4##BC001769|TRAF4|9618|TNF receptor-associated factor 4##X80200|TRAF4|9618|TNF receptor-associated factor 4##AK300804|TRAF4|9618|TNF receptor-associated factor 4##AY937222|TRAF4|9618|TNF receptor-associated factor 4##AY937223|TRAF4|9618|TNF receptor-associated factor 4##AY937224|TRAF4|9618|TNF receptor-associated factor 4##DQ892825|TRAF4|9618|TNF receptor-associated factor 4##DQ896071|TRAF4|9618|TNF receptor-associated factor 4##AF082185|TRAF4|9618|TNF receptor-associated factor 4##AK095569|C17orf63|55731|chromosome 17 open reading frame 63	0.0	0.0	
chr18	24775975	24776094	reg1018975.p1	3.795	+	AF239821 BC025764 TSC_hg19_v1_chr18_-_24765254 AY358488 NM_031422	-10801	-	CU693056 AF332472 AK093349 AX748069 NM_001243848	-53155	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	-330318	-	TSC_hg19_v1_chr18_-_25757095 AB384981 EU832318 EU832403 X54315 BC036470	981003	-	TSC_hg19_v1_chr18_-_25757363 NM_001792	981363	-	TSC_hg19_v1_chr18_-_28622624 X83929 D17427 AK291748 NM_001941 NM_024423	3846668	-	AF239821|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##BC025764|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AY358488|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_031422|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AF332472|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AK093349|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##NM_001243848|CHST9|83539|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4##EU832318|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##EU832403|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X54315|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##BC036470|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##NM_001792|CDH2|1000|cadherin 2, type 1, N-cadherin (neuronal)##X83929|DSC3|1825|desmocollin 3##D17427|DSC3|1825|desmocollin 3##AK291748|DSC3|1825|desmocollin 3##NM_001941|DSC3|1825|desmocollin 3##NM_024423|DSC3|1825|desmocollin 3	0.996461	0.0	
chr2	113385855	113385946	reg1020139.p2	3.795	+	AK096990 TSC_hg19_v1_chr2_+_113342182	-43711	+	TSC_hg19_v1_chr2_+_113342023 AK024631 BC004498 NM_032309 AK312219	-43862	+	BX647360 BC110833 BC150139 AK294027 TSC_hg19_v1_chr2_+_113300041 AK001678 AK301178 AK022533 BX647683	-85981	+	NM_005415 AK312738 TSC_hg19_v1_chr2_+_113403515 BC019944 L20859	17620	+	TSC_hg19_v1_chr2_-_113522187 AK316241 BC036217 AK097948 AK302875 AL832036 AK292530 NM_152515	136322	-	NM_000575 BC035169	157072	-	AK096990|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BC004498|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##NM_032309|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##AK312219|CHCHD5|84269|coiled-coil-helix-coiled-coil-helix domain containing 5##BX647360|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BC110833|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BC150139|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK294027|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK001678|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK301178|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##AK022533|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##BX647683|POLR1B|84172|polymerase (RNA) I polypeptide B, 128kDa##NM_005415|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK312738|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##BC019944|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##L20859|SLC20A1|6574|solute carrier family 20 (phosphate transporter), member 1##AK316241|CKAP2L|150468|cytoskeleton associated protein 2-like##BC036217|CKAP2L|150468|cytoskeleton associated protein 2-like##AK097948|CKAP2L|150468|cytoskeleton associated protein 2-like##AK302875|CKAP2L|150468|cytoskeleton associated protein 2-like##AL832036|CKAP2L|150468|cytoskeleton associated protein 2-like##AK292530|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_152515|CKAP2L|150468|cytoskeleton associated protein 2-like##NM_000575|IL1A|3552|interleukin 1, alpha##BC035169|IL1A|3552|interleukin 1, alpha	1.118112	0.0	denovo_WM_7:79:0.202
chr21	47563776	47563956	reg1009605.p2	3.795	+	M34570 TSC_hg19_v1_chr21_+_47546455	-17425	+	AL360197 TSC_hg19_v1_chr21_+_47545943	-17946	+	TSC_hg19_v1_chr21_+_47545200 BT006913	-18670	+	BC136383 BC136395 BC052248 AF169017 AF289021 AF289022 AF289023 AF289024 NM_006657 NM_206965 TSC_hg19_v1_chr21_-_47575491	11617	-	AL136871 TSC_hg19_v1_chr21_-_47604330	40450	-	TSC_hg19_v1_chr21_-_47604340 BC084577	40480	-	M34570|COL6A2|1292|collagen, type VI, alpha 2##AL360197|COL6A2|1292|collagen, type VI, alpha 2##BT006913|COL6A2|1292|collagen, type VI, alpha 2##BC136383|FTCD|10841|formiminotransferase cyclodeaminase##BC136395|FTCD|10841|formiminotransferase cyclodeaminase##BC052248|FTCD|10841|formiminotransferase cyclodeaminase##AF169017|FTCD|10841|formiminotransferase cyclodeaminase##AF289021|FTCD|10841|formiminotransferase cyclodeaminase##AF289022|FTCD|10841|formiminotransferase cyclodeaminase##AF289023|FTCD|10841|formiminotransferase cyclodeaminase##AF289024|FTCD|10841|formiminotransferase cyclodeaminase##NM_006657|FTCD|10841|formiminotransferase cyclodeaminase##NM_206965|FTCD|10841|formiminotransferase cyclodeaminase##AL136871|C21orf56|84221|chromosome 21 open reading frame 56##BC084577|C21orf56|84221|chromosome 21 open reading frame 56	0.0	0.0	
chr2	171782881	171783002	reg1015420.p1	3.795	+	TSC_hg19_v1_chr2_+_171673396 AK292582 BC026349 BC002815 S61898 L16888 Z22750	-109529	+	M81883 NM_000817 NM_013445 BC037780 TSC_hg19_v1_chr2_+_171673241	-109782	+	TSC_hg19_v1_chr2_+_171572707 BC069026	-210231	+	NM_001201428 AL117430 AK125761 NM_015530	2050	+	TSC_hg19_v1_chr2_+_171785776 AK315508 AK023201 AK225810 AK293640 AK023082	2760	+	TSC_hg19_v1_chr2_+_171785781 AK298020 BC007770 BC001408 AK296698 AK027349 AB528359 DQ892715 DQ895965 CU675801	2873	+	AK292582|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC026349|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC002815|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##S61898|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##L16888|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##Z22750|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##M81883|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##NM_000817|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##NM_013445|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC037780|GAD1|2571|glutamate decarboxylase 1 (brain, 67kDa)##BC069026|SP5|389058|Sp5 transcription factor##NM_001201428|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AL117430|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK125761|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##NM_015530|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK315508|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK023201|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK225810|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK293640|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK023082|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK298020|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##BC007770|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##BC001408|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK296698|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##AK027349|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##DQ892715|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa##DQ895965|GORASP2|26003|golgi reassembly stacking protein 2, 55kDa	0.988607	0.0	denovo_WM_7:-36:0.579
chr2	46765623	46765749	reg1015697.p1	3.795	+	BC034808 NM_080653	-18591	-	NM_001145051	-58983	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	-240711	+	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	4163	+	TSC_hg19_v1_chr2_+_46769905 BC056154 BC070485 BC065291 BC093805 BC101806 AF498976 M31470 AB528045	4352	+	BC010864 D13435 TSC_hg19_v1_chr2_-_46844167 BC039303	78476	-	BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q##BC056154|RHOQ|23433|ras homolog gene family, member Q##BC070485|RHOQ|23433|ras homolog gene family, member Q##BC065291|RHOQ|23433|ras homolog gene family, member Q##BC093805|RHOQ|23433|ras homolog gene family, member Q##BC101806|RHOQ|23433|ras homolog gene family, member Q##AF498976|RHOQ|23433|ras homolog gene family, member Q##M31470|RHOQ|23433|ras homolog gene family, member Q##D13435|PIGF|5281|phosphatidylinositol glycan anchor biosynthesis, class F	0.0	0.0	
chr3	182896699	182896807	reg1012030.p1	3.795	+	TSC_hg19_v1_chr3_-_182880523 AB013924 AK313172 BC032940 NM_014398	-16189	-	TSC_hg19_v1_chr3_-_182880435 DQ892118	-16314	-	BC036395 TSC_hg19_v1_chr3_-_182833987	-62830	-	TSC_hg19_v1_chr3_+_182970969 NM_032047 AK074424	74195	+	AB209517 TSC_hg19_v1_chr3_+_182971343	74525	+	TSC_hg19_v1_chr3_+_182971608 AK091474 AX747008	74853	+	AB013924|LAMP3|27074|lysosomal-associated membrane protein 3##AK313172|LAMP3|27074|lysosomal-associated membrane protein 3##BC032940|LAMP3|27074|lysosomal-associated membrane protein 3##NM_014398|LAMP3|27074|lysosomal-associated membrane protein 3##DQ892118|LAMP3|27074|lysosomal-associated membrane protein 3##BC036395|MCCC1|56922|methylcrotonoyl-CoA carboxylase 1 (alpha)##NM_032047|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK074424|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AB209517|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5##AK091474|B3GNT5|84002|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	0.0	0.086436	
chr8	71085068	71085187	reg1014252.p2	3.795	+	TSC_hg19_v1_chr8_-_70983549 AF319458 AK022595 NM_024504	-101572	-	TSC_hg19_v1_chr8_-_70983468 BC052311	-101656	-	AK308488 AF205075 AK096879 NM_030958	-337878	-	BC092442 TSC_hg19_v1_chr8_-_71315599	230420	-	TSC_hg19_v1_chr8_-_71316041 NM_006540 X97674 AK308426	230899	-	BT007359 CR541654 CR541739 DQ892688 DQ895932 TSC_hg19_v1_chr8_-_71520586 AK292777 BC020283 BC000687 AK289397 X63679 BC037738	435395	-	AF319458|PRDM14|63978|PR domain containing 14##AK022595|PRDM14|63978|PR domain containing 14##NM_024504|PRDM14|63978|PR domain containing 14##BC052311|PRDM14|63978|PR domain containing 14##AK308488|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AF205075|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##AK096879|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##NM_030958|SLCO5A1|81796|solute carrier organic anion transporter family, member 5A1##BC092442|NCOA2|10499|nuclear receptor coactivator 2##NM_006540|NCOA2|10499|nuclear receptor coactivator 2##X97674|NCOA2|10499|nuclear receptor coactivator 2##AK308426|NCOA2|10499|nuclear receptor coactivator 2##BT007359|TRAM1|23471|translocation associated membrane protein 1##CR541654|TRAM1|23471|translocation associated membrane protein 1##CR541739|TRAM1|23471|translocation associated membrane protein 1##DQ892688|TRAM1|23471|translocation associated membrane protein 1##DQ895932|TRAM1|23471|translocation associated membrane protein 1##AK292777|TRAM1|23471|translocation associated membrane protein 1##BC020283|TRAM1|23471|translocation associated membrane protein 1##BC000687|TRAM1|23471|translocation associated membrane protein 1##AK289397|TRAM1|23471|translocation associated membrane protein 1##X63679|TRAM1|23471|translocation associated membrane protein 1##BC037738|TRAM1|23471|translocation associated membrane protein 1	0.0	0.0	
chr10	80827134	80827252	reg1013357.p1	3.794	+	TSC_hg19_v1_chr10_+_79793620 AK311776 AK311910 D28424 BX537975 BX647260 BC071926 AF147330 BC000523 BC003149	-1033562	+	NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022 TSC_hg19_v1_chr10_+_79793586	-1033637	+	TSC_hg19_v1_chr10_-_79789304 NM_007055	-1037879	-	TSC_hg19_v1_chr10_+_80828779 BC007288 NM_020338	1595	+	TSC_hg19_v1_chr10_+_80899458 AK025812	72291	+	TSC_hg19_v1_chr10_+_81003207 AB033050	175937	+	AK311776|RPS24|6229|ribosomal protein S24##AK311910|RPS24|6229|ribosomal protein S24##BX537975|RPS24|6229|ribosomal protein S24##BX647260|RPS24|6229|ribosomal protein S24##BC071926|RPS24|6229|ribosomal protein S24##AF147330|RPS24|6229|ribosomal protein S24##BC000523|RPS24|6229|ribosomal protein S24##BC003149|RPS24|6229|ribosomal protein S24##NM_001026|RPS24|6229|ribosomal protein S24##NM_001142282|RPS24|6229|ribosomal protein S24##NM_001142283|RPS24|6229|ribosomal protein S24##NM_001142284|RPS24|6229|ribosomal protein S24##NM_001142285|RPS24|6229|ribosomal protein S24##NM_033022|RPS24|6229|ribosomal protein S24##NM_007055|POLR3A|11128|polymerase (RNA) III (DNA directed) polypeptide A, 155kDa##BC007288|ZMIZ1|57178|zinc finger, MIZ-type containing 1##NM_020338|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AK025812|ZMIZ1|57178|zinc finger, MIZ-type containing 1##AB033050|ZMIZ1|57178|zinc finger, MIZ-type containing 1	0.0	0.0	
chr11	327213	327316	reg1013666.p1	3.794	+	TSC_hg19_v1_chr11_-_320925 X57352	-6277	-	TSC_hg19_v1_chr11_-_320849 BT006892 AM392723 AM393694 DQ891098 DQ894280 BC070243 BC008417 AK292173 BC022439 BC006794 NM_021034	-6420	-	J04164 NM_003641 TSC_hg19_v1_chr11_+_314039 AK290480 BC000897 X84958 AB590121 BT007173 DQ891094 DQ894276	-13253	+	TSC_hg19_v1_chr11_+_369724 NM_178537 AB089939 BC131528	42501	+	TSC_hg19_v1_chr11_+_394208 BC000081 NM_007183 AK025067 AK223511 Z98265	66948	+	AF053719 TSC_hg19_v1_chr11_+_394242 DQ891692 DQ894875 CU674026	67000	+	X57352|IFITM3|10410|interferon induced transmembrane protein 3##BT006892|IFITM3|10410|interferon induced transmembrane protein 3##AM392723|IFITM3|10410|interferon induced transmembrane protein 3##AM393694|IFITM3|10410|interferon induced transmembrane protein 3##DQ891098|IFITM3|10410|interferon induced transmembrane protein 3##DQ894280|IFITM3|10410|interferon induced transmembrane protein 3##BC070243|IFITM3|10410|interferon induced transmembrane protein 3##BC008417|IFITM3|10410|interferon induced transmembrane protein 3##AK292173|IFITM3|10410|interferon induced transmembrane protein 3##BC022439|IFITM3|10410|interferon induced transmembrane protein 3##BC006794|IFITM3|10410|interferon induced transmembrane protein 3##NM_021034|IFITM3|10410|interferon induced transmembrane protein 3##J04164|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_003641|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##AK290480|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BC000897|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##X84958|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##BT007173|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ891094|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##DQ894276|IFITM1|8519|interferon induced transmembrane protein 1 (9-27)##NM_178537|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##AB089939|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC131528|B4GALNT4|338707|beta-1,4-N-acetyl-galactosaminyl transferase 4##BC000081|PKP3|11187|plakophilin 3##NM_007183|PKP3|11187|plakophilin 3##AK025067|PKP3|11187|plakophilin 3##AK223511|PKP3|11187|plakophilin 3##Z98265|PKP3|11187|plakophilin 3##AF053719|PKP3|11187|plakophilin 3##DQ891692|PKP3|11187|plakophilin 3##DQ894875|PKP3|11187|plakophilin 3	0.0	0.0	
chr12	106696454	106696585	reg1014649.p2	3.794	+	BC067357 BC082972 TSC_hg19_v1_chr12_-_106641928 NM_006825 X69910 BC094824 BC037578 AK223563 AK123693 BC025341	-54672	-	AB011109 BC152462 NM_014840	-162709	-	TSC_hg19_v1_chr12_-_106532646 AK289992 AK027302	-163837	-	TSC_hg19_v1_chr12_+_106696595 BC033617 NM_152772 BC017872 AF306671 AF306858 AK314055	53	+	NM_018082 TSC_hg19_v1_chr12_+_106751498 BX537447	54951	+	TSC_hg19_v1_chr12_+_106751589 BC046238 AK291635 AY092084	55058	+	BC067357|CKAP4|10970|cytoskeleton-associated protein 4##BC082972|CKAP4|10970|cytoskeleton-associated protein 4##NM_006825|CKAP4|10970|cytoskeleton-associated protein 4##X69910|CKAP4|10970|cytoskeleton-associated protein 4##BC094824|CKAP4|10970|cytoskeleton-associated protein 4##BC037578|CKAP4|10970|cytoskeleton-associated protein 4##AK223563|CKAP4|10970|cytoskeleton-associated protein 4##AK123693|CKAP4|10970|cytoskeleton-associated protein 4##BC025341|CKAP4|10970|cytoskeleton-associated protein 4##AB011109|NUAK1|9891|NUAK family, SNF1-like kinase, 1##BC152462|NUAK1|9891|NUAK family, SNF1-like kinase, 1##NM_014840|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK289992|NUAK1|9891|NUAK family, SNF1-like kinase, 1##AK027302|NUAK1|9891|NUAK family, SNF1-like kinase, 1##BC033617|TCP11L2|255394|t-complex 11 (mouse)-like 2##NM_152772|TCP11L2|255394|t-complex 11 (mouse)-like 2##BC017872|TCP11L2|255394|t-complex 11 (mouse)-like 2##AF306671|TCP11L2|255394|t-complex 11 (mouse)-like 2##AF306858|TCP11L2|255394|t-complex 11 (mouse)-like 2##AK314055|TCP11L2|255394|t-complex 11 (mouse)-like 2##NM_018082|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##BX537447|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##BC046238|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AK291635|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B##AY092084|POLR3B|55703|polymerase (RNA) III (DNA directed) polypeptide B	0.0	0.0	
chr14	103861644	103861769	reg1011236.p2	3.794	+	TSC_hg19_v1_chr14_+_103851775 AF465413 BC024773 U64205	-9820	+	TSC_hg19_v1_chr14_+_103851772 BX161395	-9936	+	TSC_hg19_v1_chr14_+_103851700 NM_001128918 NM_001128919 NM_001128920 NM_001128921 NM_002376	-10003	+	CR542268 CU676412 M16364 TSC_hg19_v1_chr14_-_103988931	127174	-	M16451 L47647 TSC_hg19_v1_chr14_-_103989168 BC004914 BC019259 BC008323 BC001190 BC019281 BC010002 AK290101 AK312282 AK298198	127437	-	NM_001823 TSC_hg19_v1_chr14_-_103989206	127496	-	AF465413|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BC024773|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##U64205|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##BX161395|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128918|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128919|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128920|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_001128921|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##NM_002376|MARK3|4140|MAP/microtubule affinity-regulating kinase 3##CR542268|CKB|1152|creatine kinase, brain##M16364|CKB|1152|creatine kinase, brain##M16451|CKB|1152|creatine kinase, brain##L47647|CKB|1152|creatine kinase, brain##BC004914|CKB|1152|creatine kinase, brain##BC019259|CKB|1152|creatine kinase, brain##BC008323|CKB|1152|creatine kinase, brain##BC001190|CKB|1152|creatine kinase, brain##BC019281|CKB|1152|creatine kinase, brain##BC010002|CKB|1152|creatine kinase, brain##AK290101|CKB|1152|creatine kinase, brain##AK312282|CKB|1152|creatine kinase, brain##AK298198|CKB|1152|creatine kinase, brain##NM_001823|CKB|1152|creatine kinase, brain	1.474659	0.0	denovo_WM_7:21:0.445	denovo_WM_7:-31:0.697
chr16	68318746	68318922	reg1011759.p1	3.794	+	TSC_hg19_v1_chr16_+_68298430 NM_001076785 NM_003983 CR749291 CR749475 AK310866 BC028216	-20384	+	AB017494 TSC_hg19_v1_chr16_+_68279299 AY358425 EU832326	-39523	+	AK300596 AK074828 NM_012320 TSC_hg19_v1_chr16_+_68279275 AK296263 AK298494 AL110209 BC062605 AK001705 AK222790	-39584	+	TSC_hg19_v1_chr16_-_68344850 BC013778 AK023353 AK091674 AK225712 AY078070 NM_032178	25992	-	TSC_hg19_v1_chr16_+_68344946 NM_001184824 NM_019023 AK001502 AK304605 AK056647	26125	+	TSC_hg19_v1_chr16_-_68482409 AK289651 NM_018667 BC041828	163647	-	NM_001076785|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##NM_003983|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749291|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##CR749475|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AK310866|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##BC028216|SLC7A6|9057|solute carrier family 7 (amino acid transporter light chain, y+L system), member 6##AB017494|PLA2G15|23659|phospholipase A2, group XV##AY358425|PLA2G15|23659|phospholipase A2, group XV##EU832326|PLA2G15|23659|phospholipase A2, group XV##AK300596|PLA2G15|23659|phospholipase A2, group XV##AK074828|PLA2G15|23659|phospholipase A2, group XV##NM_012320|PLA2G15|23659|phospholipase A2, group XV##AK296263|PLA2G15|23659|phospholipase A2, group XV##AK298494|PLA2G15|23659|phospholipase A2, group XV##AL110209|PLA2G15|23659|phospholipase A2, group XV##BC062605|PLA2G15|23659|phospholipase A2, group XV##AK001705|PLA2G15|23659|phospholipase A2, group XV##AK222790|PLA2G15|23659|phospholipase A2, group XV##BC013778|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK023353|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK091674|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AK225712|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##AY078070|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_032178|SLC7A6OS|84138|solute carrier family 7, member 6 opposite strand##NM_001184824|PRMT7|54496|protein arginine methyltransferase 7##NM_019023|PRMT7|54496|protein arginine methyltransferase 7##AK001502|PRMT7|54496|protein arginine methyltransferase 7##AK304605|PRMT7|54496|protein arginine methyltransferase 7##AK056647|PRMT7|54496|protein arginine methyltransferase 7##AK289651|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##NM_018667|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)##BC041828|SMPD3|55512|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)	0.991796	0.0	denovo_WM_7:-60:0.228	denovo_WM_7:-61:0.228	denovo_WM_7:-62:0.228	denovo_WM_7:-63:0.228
chr2	219304359	219304453	reg1013911.p1	3.794	+	TSC_hg19_v1_chr2_+_219283845 NM_007127 AK223398 AK300965 AK313709	-20566	+	TSC_hg19_v1_chr2_+_219264739 BC012977 AB463546 EU446878 CU680458 AY279529	-39625	+	AF229162 NM_021198 NM_182642 TSC_hg19_v1_chr2_+_219264577	-39866	+	TSC_hg19_v1_chr2_-_219433075 BC133007 BC133009 BC144249 BC144252 AK095577 AK128583 BX538024 BC050461 BC112901 AL832645 NM_020935	128647	-	AK293281 TSC_hg19_v1_chr2_+_219433334 AB500892	128960	+	TSC_hg19_v1_chr2_+_219433559 BC137455 BC137456 AK316567 BC007102 NM_005444	129191	+	NM_007127|VIL1|7429|villin 1##AK223398|VIL1|7429|villin 1##AK300965|VIL1|7429|villin 1##AK313709|VIL1|7429|villin 1##BC012977|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##EU446878|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AY279529|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##AF229162|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_021198|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##NM_182642|CTDSP1|58190|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1##BC133007|USP37|57695|ubiquitin specific peptidase 37##BC133009|USP37|57695|ubiquitin specific peptidase 37##BC144249|USP37|57695|ubiquitin specific peptidase 37##BC144252|USP37|57695|ubiquitin specific peptidase 37##AK095577|USP37|57695|ubiquitin specific peptidase 37##AK128583|USP37|57695|ubiquitin specific peptidase 37##BX538024|USP37|57695|ubiquitin specific peptidase 37##BC050461|USP37|57695|ubiquitin specific peptidase 37##BC112901|USP37|57695|ubiquitin specific peptidase 37##AL832645|USP37|57695|ubiquitin specific peptidase 37##NM_020935|USP37|57695|ubiquitin specific peptidase 37##AK293281|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##AB500892|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##BC137455|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##BC137456|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##AK316567|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##BC007102|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)##NM_005444|RQCD1|9125|RCD1 required for cell differentiation1 homolog (S. pombe)	0.846638	0.0	denovo_WM_7:-19:0.298	denovo_WM_7:-21:0.462
chr3	49523014	49523080	reg1014065.p2	3.794	+	TSC_hg19_v1_chr3_+_49507721 NM_001165928 NM_001177634 NM_001177635 NM_001177636 NM_001177637 NM_001177638 NM_001177639 NM_001177640 NM_001177641 NM_001177642 NM_001177644 NM_004393 L19711 BC012740 BC014616 AK291692	-15256	+	TSC_hg19_v1_chr3_+_49506079 NM_001177643	-16940	+	TSC_hg19_v1_chr3_-_49466744 AK313073 NM_032316 AK301846	-56295	-	TSC_hg19_v1_chr3_+_49547870 DQ893491 DQ896435	24870	+	AK297802 TSC_hg19_v1_chr3_+_49568448	45362	+	TSC_hg19_v1_chr3_+_49591913 AF052224 NM_003458	68869	+	NM_001165928|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177634|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177635|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177636|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177637|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177638|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177639|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177640|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177641|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177642|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177644|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_004393|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##L19711|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC012740|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##BC014616|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK291692|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##NM_001177643|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK313073|NICN1|84276|nicolin 1##NM_032316|NICN1|84276|nicolin 1##AK301846|NICN1|84276|nicolin 1##DQ893491|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##DQ896435|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AK297802|DAG1|1605|dystroglycan 1 (dystrophin-associated glycoprotein 1)##AF052224|BSN|8927|bassoon (presynaptic cytomatrix protein)##NM_003458|BSN|8927|bassoon (presynaptic cytomatrix protein)	1.780793	0.0	denovo_WM_7:36:0.305	denovo_WM_7:42:0.353	denovo_WM_7:57:0.254	denovo_WM_7:58:0.274
chr4	39657750	39657865	reg1014562.p1	3.794	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-17251	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-128181	+	TSC_hg19_v1_chr4_-_39529187 NM_001184700 NM_001184701 NM_003359	-128632	-	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	41997	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	321531	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	321786	-	AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##NM_001184700|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001184701|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_003359|UGDH|7358|UDP-glucose 6-dehydrogenase##NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)	0.998572	0.0	denovo_WM_7:58:0.494	denovo_WM_7:59:0.494
chr6	24932727	24932882	reg1015305.p1	3.794	+	AB002384 NM_014722	-21610	-	U49187 AK300138 BC001232 NM_015864	-55287	-	NM_001251991	-157164	+	TSC_hg19_v1_chr6_-_24936189 AK299047	3379	-	TSC_hg19_v1_chr6_+_25279316 BC040903	346514	+	TSC_hg19_v1_chr6_+_25279656 AK125696 NM_001173977 NM_017640	346854	+	AB002384|FAM65B|9750|family with sequence similarity 65, member B##NM_014722|FAM65B|9750|family with sequence similarity 65, member B##U49187|FAM65B|9750|family with sequence similarity 65, member B##AK300138|FAM65B|9750|family with sequence similarity 65, member B##BC001232|FAM65B|9750|family with sequence similarity 65, member B##NM_015864|FAM65B|9750|family with sequence similarity 65, member B##NM_001251991|GMNN|51053|geminin, DNA replication inhibitor##AK299047|FAM65B|9750|family with sequence similarity 65, member B##BC040903|LRRC16A|55604|leucine rich repeat containing 16A##AK125696|LRRC16A|55604|leucine rich repeat containing 16A##NM_001173977|LRRC16A|55604|leucine rich repeat containing 16A##NM_017640|LRRC16A|55604|leucine rich repeat containing 16A	0.019078	0.0	
chr14	100131372	100131493	reg1012881.p2	3.793	+	AB593097 AY358173 NM_001127258 NM_032425 BC132877 BC136577 HQ258579 AB593096	-19870	+	TSC_hg19_v1_chr14_-_100070545 NM_001144995	-60848	-	TSC_hg19_v1_chr14_+_99947745 NM_001099402 BC015935 AK311075	-183673	+	TSC_hg19_v1_chr14_+_100150596 AB209749 BC022539 AF094480 NM_006668	19243	+	TSC_hg19_v1_chr14_+_100204058 AK307925	72618	+	AK299812 TSC_hg19_v1_chr14_+_100240040	108559	+	AB593097|HHIPL1|84439|HHIP-like 1##AY358173|HHIPL1|84439|HHIP-like 1##NM_001127258|HHIPL1|84439|HHIP-like 1##NM_032425|HHIPL1|84439|HHIP-like 1##BC132877|HHIPL1|84439|HHIP-like 1##BC136577|HHIPL1|84439|HHIP-like 1##HQ258579|HHIPL1|84439|HHIP-like 1##AB593096|HHIPL1|84439|HHIP-like 1##NM_001144995|CCDC85C|317762|coiled-coil domain containing 85C##NM_001099402|CCNK|8812|cyclin K##BC015935|CCNK|8812|cyclin K##AK311075|CCNK|8812|cyclin K##AB209749|CYP46A1|10858|cytochrome P450, family 46, subfamily A, polypeptide 1##BC022539|CYP46A1|10858|cytochrome P450, family 46, subfamily A, polypeptide 1##AF094480|CYP46A1|10858|cytochrome P450, family 46, subfamily A, polypeptide 1##NM_006668|CYP46A1|10858|cytochrome P450, family 46, subfamily A, polypeptide 1##AK307925|EML1|2009|echinoderm microtubule associated protein like 1##AK299812|EML1|2009|echinoderm microtubule associated protein like 1	0.834228	0.0	denovo_WM_7:3:0.317	denovo_WM_7:4:0.517
chr2	157235615	157235752	reg1018294.p2	3.793	+	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	-46520	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	-48993	-	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-1680494	+	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	56275	+	TSC_hg19_v1_chr2_+_157291981 AK290057	56322	+	TSC_hg19_v1_chr2_+_157292178 AB209399 U36310 AK299645	56551	+	S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK290057|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AB209399|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U36310|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##AK299645|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	1.992882	0.0	denovo_WM_7:0:0.286	denovo_WM_7:0:0.567	denovo_WM_7:-14:0.327	denovo_WM_7:-15:0.607
chr4	30315055	30315192	reg1017056.p2	3.793	+	AF328905 NM_001169117 NM_001169118 NM_020860 TSC_hg19_v1_chr4_+_26862406 BC146661 BC152554 AK096846 BC136449 BC171766 AB040915 AL136577	-3452583	+	NM_018317 TSC_hg19_v1_chr4_+_26585705 AK001944 AK225395 AK289631 AK310795 BC031642 AB449905 CU689214	-3729443	+	AB528043 AY322549 BC074987 L13605 L19315 NM_000730 AK313978	-3823138	-	TSC_hg19_v1_chr4_+_30721990 NM_032456 AB006755 NM_001173523 NM_002589 NM_032457 BC020338	406876	+	AB006757 TSC_hg19_v1_chr4_+_30722198	407071	+	TSC_hg19_v1_chr4_+_30722465 AB006756	407336	+	AF328905|STIM2|57620|stromal interaction molecule 2##NM_001169117|STIM2|57620|stromal interaction molecule 2##NM_001169118|STIM2|57620|stromal interaction molecule 2##NM_020860|STIM2|57620|stromal interaction molecule 2##BC146661|STIM2|57620|stromal interaction molecule 2##BC152554|STIM2|57620|stromal interaction molecule 2##AK096846|STIM2|57620|stromal interaction molecule 2##BC136449|STIM2|57620|stromal interaction molecule 2##BC171766|STIM2|57620|stromal interaction molecule 2##AB040915|STIM2|57620|stromal interaction molecule 2##AL136577|STIM2|57620|stromal interaction molecule 2##NM_018317|TBC1D19|55296|TBC1 domain family, member 19##AK001944|TBC1D19|55296|TBC1 domain family, member 19##AK225395|TBC1D19|55296|TBC1 domain family, member 19##AK289631|TBC1D19|55296|TBC1 domain family, member 19##AK310795|TBC1D19|55296|TBC1 domain family, member 19##BC031642|TBC1D19|55296|TBC1 domain family, member 19##AB449905|TBC1D19|55296|TBC1 domain family, member 19##AY322549|CCKAR|886|cholecystokinin A receptor##BC074987|CCKAR|886|cholecystokinin A receptor##L13605|CCKAR|886|cholecystokinin A receptor##L19315|CCKAR|886|cholecystokinin A receptor##NM_000730|CCKAR|886|cholecystokinin A receptor##AK313978|CCKAR|886|cholecystokinin A receptor##NM_032456|PCDH7|5099|protocadherin 7##AB006755|PCDH7|5099|protocadherin 7##NM_001173523|PCDH7|5099|protocadherin 7##NM_002589|PCDH7|5099|protocadherin 7##NM_032457|PCDH7|5099|protocadherin 7##BC020338|PCDH7|5099|protocadherin 7##AB006757|PCDH7|5099|protocadherin 7##AB006756|PCDH7|5099|protocadherin 7	0.974122	0.0	denovo_WM_7:25:0.488	denovo_WM_7:26:0.406
chr6	42749177	42749276	reg1003235.p1	3.793	+	TSC_hg19_v1_chr6_+_42714735 D87077	-34483	+	TSC_hg19_v1_chr6_-_42714549 BC017479	-34674	-	TSC_hg19_v1_chr6_-_42713837 NM_003192	-35351	-	TSC_hg19_v1_chr6_+_42749585 AK091434 AK294706 AX746981 CR627378	471	+	TSC_hg19_v1_chr6_+_42750789 AK096036	1435	+	TSC_hg19_v1_chr6_+_42751233 AK098234	2015	+	D87077|KIAA0240|23506|KIAA0240##BC017479|TBCC|6903|tubulin folding cofactor C##NM_003192|TBCC|6903|tubulin folding cofactor C##AK091434|KIAA0240|23506|KIAA0240##AK294706|KIAA0240|23506|KIAA0240##CR627378|KIAA0240|23506|KIAA0240##AK096036|FLJ38717|401261|FLJ38717 protein##AK098234|FLJ38717|401261|FLJ38717 protein	0.95065	0.0	denovo_WM_7:52:0.327	denovo_WM_7:53:0.242	denovo_WM_7:54:0.312
chr7	155431215	155431346	reg1012519.p1	3.793	+	BC105732 BC105733 BC105734 BC107598 NM_001103176 AK094445	-104733	-	TSC_hg19_v1_chr7_+_155250705 BC104970 BC104972 NM_001427	-180516	+	AK291675 TSC_hg19_v1_chr7_+_155089667	-341636	+	TSC_hg19_v1_chr7_-_155437101 AK091942 AX747269	5810	-	TSC_hg19_v1_chr7_+_155437147 BC011923	5871	+	TSC_hg19_v1_chr7_+_155437182 NM_053043	5928	+	BC105732|CNPY1|285888|canopy 1 homolog (zebrafish)##BC105733|CNPY1|285888|canopy 1 homolog (zebrafish)##BC105734|CNPY1|285888|canopy 1 homolog (zebrafish)##BC107598|CNPY1|285888|canopy 1 homolog (zebrafish)##NM_001103176|CNPY1|285888|canopy 1 homolog (zebrafish)##AK094445|CNPY1|285888|canopy 1 homolog (zebrafish)##BC104970|EN2|2020|engrailed homeobox 2##BC104972|EN2|2020|engrailed homeobox 2##NM_001427|EN2|2020|engrailed homeobox 2##AK291675|INSIG1|3638|insulin induced gene 1##BC011923|RBM33|155435|RNA binding motif protein 33##NM_053043|RBM33|155435|RNA binding motif protein 33	0.989746	0.0	denovo_WM_7:37:0.570	denovo_WM_7:40:0.261
chr8	134441135	134441301	reg1002162.p2	3.793	+	AK223542 TSC_hg19_v1_chr8_-_134309496 X92845 BC003175 AK299636 D87953 AF230380 AK091147 AK095649 AK096562 AK296794 AK297342 AK298236 AK307829 AK308117 NM_001135242 NM_006096	-131721	-	AK293031 AK301508 AK315822 NM_001204869 NM_001204870 NM_003882 NM_080838 TSC_hg19_v1_chr8_+_134203281 AF100779 AY196486 AY196487 AY196488 BC074840 BC074841 AB034725	-237888	+	NM_001045556 NM_001045557	-325909	-	BC018357 L29555 TSC_hg19_v1_chr8_-_134584131 AK311319 BX648001 NM_003033 NM_173344	142879	-	AK300133 BC012989 AB167740 AB167741 BC070097 AK300324 AK311494 BC098405 NM_001029939 NM_001167583 NM_001174158	1267576	-	TSC_hg19_v1_chr8_-_135725053 AB463359	1283861	-	AK223542|NDRG1|10397|N-myc downstream regulated 1##X92845|NDRG1|10397|N-myc downstream regulated 1##BC003175|NDRG1|10397|N-myc downstream regulated 1##AK299636|NDRG1|10397|N-myc downstream regulated 1##D87953|NDRG1|10397|N-myc downstream regulated 1##AF230380|NDRG1|10397|N-myc downstream regulated 1##AK091147|NDRG1|10397|N-myc downstream regulated 1##AK095649|NDRG1|10397|N-myc downstream regulated 1##AK096562|NDRG1|10397|N-myc downstream regulated 1##AK296794|NDRG1|10397|N-myc downstream regulated 1##AK297342|NDRG1|10397|N-myc downstream regulated 1##AK298236|NDRG1|10397|N-myc downstream regulated 1##AK307829|NDRG1|10397|N-myc downstream regulated 1##AK308117|NDRG1|10397|N-myc downstream regulated 1##NM_001135242|NDRG1|10397|N-myc downstream regulated 1##NM_006096|NDRG1|10397|N-myc downstream regulated 1##AK293031|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK301508|WISP1|8840|WNT1 inducible signaling pathway protein 1##AK315822|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204869|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001204870|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_003882|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_080838|WISP1|8840|WNT1 inducible signaling pathway protein 1##AF100779|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196486|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196487|WISP1|8840|WNT1 inducible signaling pathway protein 1##AY196488|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074840|WISP1|8840|WNT1 inducible signaling pathway protein 1##BC074841|WISP1|8840|WNT1 inducible signaling pathway protein 1##AB034725|WISP1|8840|WNT1 inducible signaling pathway protein 1##NM_001045556|SLA|6503|Src-like-adaptor##NM_001045557|SLA|6503|Src-like-adaptor##BC018357|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##L29555|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK311319|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##BX648001|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_003033|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##NM_173344|ST3GAL1|6482|ST3 beta-galactoside alpha-2,3-sialyltransferase 1##AK300133|ZFAT|57623|zinc finger and AT hook domain containing##BC012989|ZFAT|57623|zinc finger and AT hook domain containing##AB167740|ZFAT|57623|zinc finger and AT hook domain containing##AB167741|ZFAT|57623|zinc finger and AT hook domain containing##BC070097|ZFAT|57623|zinc finger and AT hook domain containing##AK300324|ZFAT|57623|zinc finger and AT hook domain containing##AK311494|ZFAT|57623|zinc finger and AT hook domain containing##BC098405|ZFAT|57623|zinc finger and AT hook domain containing##NM_001029939|ZFAT|57623|zinc finger and AT hook domain containing##NM_001167583|ZFAT|57623|zinc finger and AT hook domain containing##NM_001174158|ZFAT|57623|zinc finger and AT hook domain containing	0.0	0.0	
chr8	84727365	84727526	reg1017732.p2	3.793	+	AL833763 BC033630 AK290903 NM_022133 NM_152836 NM_152837	-1972972	-	TSC_hg19_v1_chr8_+_82644710 BC014321 NM_152284 AK314873 AK000049 AY329086 AB120734	-2082686	+	TSC_hg19_v1_chr8_-_82633531 CR457323 BC051857 AK304111 BC056877 BC022251 AK024069 AK225195 NM_001170796 NM_001170797 NM_024699	-2093919	-	NM_001100392 NM_001100393 TSC_hg19_v1_chr8_+_85095454	368014	+	AK095560 TSC_hg19_v1_chr8_+_85095510 AK094543 AF495529 AF495530 NM_173848	368098	+	TSC_hg19_v1_chr8_+_85095702 AK095026	368290	+	AL833763|SNX16|64089|sorting nexin 16##BC033630|SNX16|64089|sorting nexin 16##AK290903|SNX16|64089|sorting nexin 16##NM_022133|SNX16|64089|sorting nexin 16##NM_152836|SNX16|64089|sorting nexin 16##NM_152837|SNX16|64089|sorting nexin 16##BC014321|CHMP4C|92421|charged multivesicular body protein 4C##NM_152284|CHMP4C|92421|charged multivesicular body protein 4C##AK314873|CHMP4C|92421|charged multivesicular body protein 4C##AK000049|CHMP4C|92421|charged multivesicular body protein 4C##AY329086|CHMP4C|92421|charged multivesicular body protein 4C##AB120734|CHMP4C|92421|charged multivesicular body protein 4C##CR457323|ZFAND1|79752|zinc finger, AN1-type domain 1##BC051857|ZFAND1|79752|zinc finger, AN1-type domain 1##AK304111|ZFAND1|79752|zinc finger, AN1-type domain 1##BC056877|ZFAND1|79752|zinc finger, AN1-type domain 1##BC022251|ZFAND1|79752|zinc finger, AN1-type domain 1##AK024069|ZFAND1|79752|zinc finger, AN1-type domain 1##AK225195|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001170796|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001170797|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_024699|ZFAND1|79752|zinc finger, AN1-type domain 1##NM_001100392|RALYL|138046|RALY RNA binding protein-like##NM_001100393|RALYL|138046|RALY RNA binding protein-like##AK095560|RALYL|138046|RALY RNA binding protein-like##AK094543|RALYL|138046|RALY RNA binding protein-like##AF495529|RALYL|138046|RALY RNA binding protein-like##AF495530|RALYL|138046|RALY RNA binding protein-like##NM_173848|RALYL|138046|RALY RNA binding protein-like##AK095026|RALYL|138046|RALY RNA binding protein-like	0.998103	0.0	
chr9	12314896	12314962	reg1010039.p2	3.793	+	BC028038 NM_002839	-1702207	-	TSC_hg19_v1_chr9_+_8858136 AK094342	-3456796	+	BC106713 BC106714 BC106715 BC106716 NM_001040712 NM_001171025 NM_130391 NM_130392 NM_130393	-3581010	-	NM_000550 X51420 BC052608	378496	+	TSC_hg19_v1_chr9_+_12775021 NM_203403 AB073606 AK095824 BC036923	460087	+	HQ257895 TSC_hg19_v1_chr9_+_12775847	460852	+	BC028038|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_002839|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106713|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106714|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106715|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##BC106716|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001040712|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_001171025|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130391|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130392|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_130393|PTPRD|5789|protein tyrosine phosphatase, receptor type, D##NM_000550|TYRP1|7306|tyrosinase-related protein 1##X51420|TYRP1|7306|tyrosinase-related protein 1##BC052608|TYRP1|7306|tyrosinase-related protein 1##NM_203403|C9orf150|286343|chromosome 9 open reading frame 150##AB073606|C9orf150|286343|chromosome 9 open reading frame 150##AK095824|C9orf150|286343|chromosome 9 open reading frame 150##BC036923|C9orf150|286343|chromosome 9 open reading frame 150##HQ257895|C9orf150|286343|chromosome 9 open reading frame 150	0.0	0.0	
chr9	82245953	82246133	reg1010171.p2	3.793	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-58358	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-58519	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-59157	+	BC010100 NM_005077	2057552	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2058384	-	NM_001145197 AK125847 AK308327	2297328	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	0.0	0.0	
chrX	11627367	11627462	reg1016339.p2	3.793	+	AF436849 BC069118 M86932 NM_001142 NM_182680 NM_182681 BC074951	-315872	+	AF177663 NM_013423 AK297713	-343306	-	TSC_hg19_v1_chrX_+_11129467 BC001691 BC095455 U36787	-497945	+	AF012272 AF022212 AF117067 NM_006125 NM_013427	56406	-	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	148929	+	NM_001193270 AK300814	149303	+	AF436849|AMELX|265|amelogenin, X-linked##BC069118|AMELX|265|amelogenin, X-linked##M86932|AMELX|265|amelogenin, X-linked##NM_001142|AMELX|265|amelogenin, X-linked##NM_182680|AMELX|265|amelogenin, X-linked##NM_182681|AMELX|265|amelogenin, X-linked##BC074951|AMELX|265|amelogenin, X-linked##AF177663|ARHGAP6|395|Rho GTPase activating protein 6##NM_013423|ARHGAP6|395|Rho GTPase activating protein 6##AK297713|ARHGAP6|395|Rho GTPase activating protein 6##BC001691|HCCS|3052|holocytochrome c synthase##BC095455|HCCS|3052|holocytochrome c synthase##U36787|HCCS|3052|holocytochrome c synthase##AF012272|ARHGAP6|395|Rho GTPase activating protein 6##AF022212|ARHGAP6|395|Rho GTPase activating protein 6##AF117067|ARHGAP6|395|Rho GTPase activating protein 6##NM_006125|ARHGAP6|395|Rho GTPase activating protein 6##NM_013427|ARHGAP6|395|Rho GTPase activating protein 6##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)	0.670701	0.0	denovo_WM_7:-7:0.574
chr10	5426024	5426183	reg1011414.p1	3.792	+	NM_053049 BC100867 BC100868 BC100869 BC100870	-19089	+	AK314988 BC020744 NM_001818 TSC_hg19_v1_chr10_+_5238799 S68287 AB031085 AB045829 CU676682 DQ891424 DQ894598 M33375 D26125	-187308	+	BC019230 TSC_hg19_v1_chr10_+_5136613 S68288 AF149416 AM392923 BT007286 CU674730 CU676394 DQ890679 DQ893860 GQ129450 GQ129451	-289470	+	TSC_hg19_v1_chr10_-_5446792 BC098247 BC099716 BC105634 AK296616 AK025318 NM_001171864 NM_024803	20685	-	TSC_hg19_v1_chr10_+_5454547 NM_001047160 AK299335 BC053553 S82401 AB587387 CU690984	28482	+	TSC_hg19_v1_chr10_+_5488571 NM_005863 AK294244 AK304028 AK315566 AK024919 AJ010046 BC010285 CU679671	62520	+	NM_053049|UCN3|114131|urocortin 3 (stresscopin)##BC100867|UCN3|114131|urocortin 3 (stresscopin)##BC100868|UCN3|114131|urocortin 3 (stresscopin)##BC100869|UCN3|114131|urocortin 3 (stresscopin)##BC100870|UCN3|114131|urocortin 3 (stresscopin)##AK314988|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##BC020744|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##NM_001818|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##S68287|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##AB031085|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##AB045829|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##DQ891424|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##DQ894598|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##M33375|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##D26125|AKR1C4|1109|aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)##BC019230|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68288|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##AF149416|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##AM392923|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##BT007286|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##DQ890679|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##DQ893860|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##GQ129450|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##GQ129451|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##BC098247|TUBAL3|79861|tubulin, alpha-like 3##BC099716|TUBAL3|79861|tubulin, alpha-like 3##BC105634|TUBAL3|79861|tubulin, alpha-like 3##AK296616|TUBAL3|79861|tubulin, alpha-like 3##AK025318|TUBAL3|79861|tubulin, alpha-like 3##NM_001171864|TUBAL3|79861|tubulin, alpha-like 3##NM_024803|TUBAL3|79861|tubulin, alpha-like 3##NM_001047160|NET1|10276|neuroepithelial cell transforming 1##AK299335|NET1|10276|neuroepithelial cell transforming 1##BC053553|NET1|10276|neuroepithelial cell transforming 1##S82401|NET1|10276|neuroepithelial cell transforming 1##NM_005863|NET1|10276|neuroepithelial cell transforming 1##AK294244|NET1|10276|neuroepithelial cell transforming 1##AK304028|NET1|10276|neuroepithelial cell transforming 1##AK315566|NET1|10276|neuroepithelial cell transforming 1##AK024919|NET1|10276|neuroepithelial cell transforming 1##AJ010046|NET1|10276|neuroepithelial cell transforming 1##BC010285|NET1|10276|neuroepithelial cell transforming 1	0.876482	0.941234	CTCF.p2:66:0.941	denovo_WM_7:-104:0.876
chr12	15924315	15924384	reg1008461.p1	3.792	+	TSC_hg19_v1_chr12_-_15865848 AK292931	-58485	-	TSC_hg19_v1_chr12_-_15815073 AK316134	-109209	-	TSC_hg19_v1_chr12_+_15699551 AK290982	-224772	+	TSC_hg19_v1_chr12_-_15942323 U12535 BC005836 AK291777 BC030010	17883	-	TSC_hg19_v1_chr12_-_15942350 AK304860 NM_004447	18080	-	NM_007178 TSC_hg19_v1_chr12_+_16035321 AK074607 AK315891 AK297942 BC062306 AF161496 AB024327 AL136691 AK312295	110981	+	AK292931|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK316134|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK290982|PTPRO|5800|protein tyrosine phosphatase, receptor type, O##U12535|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC005836|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK291777|EPS8|2059|epidermal growth factor receptor pathway substrate 8##BC030010|EPS8|2059|epidermal growth factor receptor pathway substrate 8##AK304860|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_004447|EPS8|2059|epidermal growth factor receptor pathway substrate 8##NM_007178|STRAP|11171|serine/threonine kinase receptor associated protein##AK315891|STRAP|11171|serine/threonine kinase receptor associated protein##AK297942|STRAP|11171|serine/threonine kinase receptor associated protein##BC062306|STRAP|11171|serine/threonine kinase receptor associated protein##AF161496|STRAP|11171|serine/threonine kinase receptor associated protein##AB024327|STRAP|11171|serine/threonine kinase receptor associated protein##AL136691|STRAP|11171|serine/threonine kinase receptor associated protein##AK312295|STRAP|11171|serine/threonine kinase receptor associated protein	0.0	0.0	
chr16	10831153	10831267	reg1012639.p1	3.792	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-42445	-	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	-156720	-	NM_024997 BC137079 BC144468	-308470	+	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	6494	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	81338	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	139902	+	HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator	0.999675	0.828186	denovo_WM_7:47:0.829	CTCF.p2:-102:0.828
chr2	98293201	98293296	reg1012370.p1	3.792	+	TSC_hg19_v1_chr2_-_98280591 NM_005735	-12674	-	TSC_hg19_v1_chr2_-_98280472 CU678694 DQ893438 DQ896748 AB528334 BC006372 X82207 BC004374 BC010090	-12818	-	TSC_hg19_v1_chr2_-_98275064 BC025274	-18168	-	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	36794	+	AB083211 NM_207519	57620	+	AK025852 TSC_hg19_v1_chr2_-_98408976	115674	-	NM_005735|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ893438|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##DQ896748|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC006372|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##X82207|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC004374|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC010090|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##BC025274|ACTR1B|10120|ARP1 actin-related protein 1 homolog B, centractin beta (yeast)##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK025852|TMEM131|23505|transmembrane protein 131	0.18698	0.0	
chr3	11766209	11766359	reg1011442.p1	3.792	+	TSC_hg19_v1_chr3_-_11762012 D50911 BC001514 AK130542 BC000763 BC003038 NM_014667	-4169	-	TSC_hg19_v1_chr3_-_11685397 NM_001128219	-80888	-	AK307708 TSC_hg19_v1_chr3_-_11623831 NM_001128220	-142451	-	EU832515 EU832596 AK295839 TSC_hg19_v1_chr3_-_11888358 AK310993 BC015088 NM_138807 AK092776 AX747723 AK309733 AK303598	121975	-	TSC_hg19_v1_chr3_+_12045861 NM_003178 NM_133625 AK094464 BC051307 AB209088 U40215 AF077671 AF077737	279619	+	BT019627 CU679743 DQ891795 DQ894978 U76456 TSC_hg19_v1_chr3_-_12200413 AK313018	434095	-	D50911|VGLL4|9686|vestigial like 4 (Drosophila)##BC001514|VGLL4|9686|vestigial like 4 (Drosophila)##AK130542|VGLL4|9686|vestigial like 4 (Drosophila)##BC000763|VGLL4|9686|vestigial like 4 (Drosophila)##BC003038|VGLL4|9686|vestigial like 4 (Drosophila)##NM_014667|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128219|VGLL4|9686|vestigial like 4 (Drosophila)##AK307708|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128220|VGLL4|9686|vestigial like 4 (Drosophila)##EU832515|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##EU832596|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK295839|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK310993|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##BC015088|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##NM_138807|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK092776|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK309733|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK303598|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##NM_003178|SYN2|6854|synapsin II##NM_133625|SYN2|6854|synapsin II##AK094464|SYN2|6854|synapsin II##BC051307|SYN2|6854|synapsin II##AB209088|SYN2|6854|synapsin II##U40215|SYN2|6854|synapsin II##AF077671|SYN2|6854|synapsin II##AF077737|SYN2|6854|synapsin II##BT019627|TIMP4|7079|TIMP metallopeptidase inhibitor 4##DQ891795|TIMP4|7079|TIMP metallopeptidase inhibitor 4##DQ894978|TIMP4|7079|TIMP metallopeptidase inhibitor 4##U76456|TIMP4|7079|TIMP metallopeptidase inhibitor 4##AK313018|TIMP4|7079|TIMP metallopeptidase inhibitor 4	0.068836	0.0	
chr7	112733924	112734104	reg1008723.p2	3.792	+	NM_001146265 NM_018970 TSC_hg19_v1_chr7_-_112727844	-6174	-	TSC_hg19_v1_chr7_-_112727812 AK309392 AF250237 AK302769	-6207	-	BC030577 TSC_hg19_v1_chr7_-_112727780	-6234	-	TSC_hg19_v1_chr7_-_112758606 BC065765 BX537645	24592	-	TSC_hg19_v1_chr7_-_112758613 BC107860	24615	-	X78578 AF024579 HQ258594 BC070313 BC056666 NM_002711 BC126451 BC126453	825069	-	NM_001146265|GPR85|54329|G protein-coupled receptor 85##NM_018970|GPR85|54329|G protein-coupled receptor 85##AK309392|GPR85|54329|G protein-coupled receptor 85##AF250237|GPR85|54329|G protein-coupled receptor 85##AK302769|GPR85|54329|G protein-coupled receptor 85##BC030577|GPR85|54329|G protein-coupled receptor 85##BC065765|LOC401397|401397|uncharacterized LOC401397##BX537645|LOC401397|401397|uncharacterized LOC401397##BC107860|LOC401397|401397|uncharacterized LOC401397##X78578|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##AF024579|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##HQ258594|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC070313|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC056666|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##NM_002711|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC126451|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A##BC126453|PPP1R3A|5506|protein phosphatase 1, regulatory subunit 3A	0.168856	0.0	
chr11	107726910	107727029	reg1015869.p1	3.791	+	BC104185 BC113930 BC113987 BC104150 BC094685 AK312097 BC005261 U96094 NM_003063	-144210	-	TSC_hg19_v1_chr11_+_107462073 BC028725	-264893	+	TSC_hg19_v1_chr11_+_107461998 AK303689 AK054794	-264984	+	CU691672 TSC_hg19_v1_chr11_-_107729514 AK023080 BC048302	2536	-	AK300582 TSC_hg19_v1_chr11_-_107729530 BC039195	2619	-	NM_017515	2944	-	BC104185|SLN|6588|sarcolipin##BC113930|SLN|6588|sarcolipin##BC113987|SLN|6588|sarcolipin##BC104150|SLN|6588|sarcolipin##BC094685|SLN|6588|sarcolipin##AK312097|SLN|6588|sarcolipin##BC005261|SLN|6588|sarcolipin##U96094|SLN|6588|sarcolipin##NM_003063|SLN|6588|sarcolipin##BC028725|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK303689|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK054794|ELMOD1|55531|ELMO/CED-12 domain containing 1##AK023080|SLC35F2|54733|solute carrier family 35, member F2##BC048302|SLC35F2|54733|solute carrier family 35, member F2##AK300582|SLC35F2|54733|solute carrier family 35, member F2##BC039195|SLC35F2|54733|solute carrier family 35, member F2##NM_017515|SLC35F2|54733|solute carrier family 35, member F2	0.300441	0.0	denovo_WM_7:-103:0.241
chr1	53310936	53311020	reg1015858.p2	3.791	+	AY271826 NM_001004339	-2796	+	TSC_hg19_v1_chr1_-_53238345 D28429	-72635	-	TSC_hg19_v1_chr1_+_53192124 AK296460 NM_024646 AB051517	-118860	+	TSC_hg19_v1_chr1_-_53387217 AK300896 AK299834	76249	-	TSC_hg19_v1_chr1_-_53387399 CU692200 BC038389 BC044574 AK315906 AK310650 AK001810	76391	-	TSC_hg19_v1_chr1_-_53387413 BC051887 BC040480 NM_001198961 NM_001198962 NM_018281 AK309535	76515	-	AY271826|ZYG11A|440590|zyg-11 homolog A (C. elegans)##NM_001004339|ZYG11A|440590|zyg-11 homolog A (C. elegans)##AK296460|ZYG11B|79699|zyg-11 homolog B (C. elegans)##NM_024646|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AB051517|ZYG11B|79699|zyg-11 homolog B (C. elegans)##AK300896|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK299834|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC038389|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC044574|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK315906|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK310650|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK001810|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC051887|ECHDC2|55268|enoyl CoA hydratase domain containing 2##BC040480|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_001198961|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_001198962|ECHDC2|55268|enoyl CoA hydratase domain containing 2##NM_018281|ECHDC2|55268|enoyl CoA hydratase domain containing 2##AK309535|ECHDC2|55268|enoyl CoA hydratase domain containing 2	0.998486	0.0	denovo_WM_7:9:0.457	denovo_WM_7:10:0.457
chr16	12115907	12115998	reg1013019.p2	3.791	+	TSC_hg19_v1_chr16_+_12070608 AK022425 NM_032167 AK097928	-45379	+	NM_001192 Z29575 EF152354 BC058291 TSC_hg19_v1_chr16_+_12059066 EF152355 AY684975 Z14954 AB528957 EF152353 EF152356	-56868	+	NM_001130007	-105434	-	AY553877 CU675335 TSC_hg19_v1_chr16_-_12897670 AK298662	781699	-	AK022710 AK225359 TSC_hg19_v1_chr16_-_12897745 BX640805 AK002013 BC006289 AK093854 AK225617 NM_001099455 NM_018340	781767	-	TSC_hg19_v1_chr16_+_12995482 AK299610 NM_001145204 NM_001145205	879516	+	AK022425|SNX29|92017|sorting nexin 29##NM_032167|SNX29|92017|sorting nexin 29##AK097928|SNX29|92017|sorting nexin 29##NM_001192|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z29575|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152354|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##BC058291|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152355|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##AY684975|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##Z14954|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152353|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##EF152356|TNFRSF17|608|tumor necrosis factor receptor superfamily, member 17##NM_001130007|GSPT1|2935|G1 to S phase transition 1##AY553877|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK298662|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK022710|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225359|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BX640805|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK002013|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##BC006289|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK093854|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK225617|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_001099455|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##NM_018340|CPPED1|55313|calcineurin-like phosphoesterase domain containing 1##AK299610|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145204|SHISA9|729993|shisa homolog 9 (Xenopus laevis)##NM_001145205|SHISA9|729993|shisa homolog 9 (Xenopus laevis)	1.271911	0.0	
chr19	41258252	41258432	reg1004804.p1	3.791	+	TSC_hg19_v1_chr19_+_41257100 AK293140 AK313182 X06347 BC008290 AB464219 CU674198	-1143	+	NM_004596 TSC_hg19_v1_chr19_+_41256782 BC000405	-1566	+	TSC_hg19_v1_chr19_-_41256396 BC090894 AK123126	-1940	-	NM_001202553	22739	+	NM_006533 X75450 BC005910 BT007044 CR541648	23022	+	TSC_hg19_v1_chr19_+_41284141 NM_016154	25762	+	AK293140|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##AK313182|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##X06347|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC008290|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##NM_004596|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC000405|SNRPA|6626|small nuclear ribonucleoprotein polypeptide A##BC090894|C19orf54|284325|chromosome 19 open reading frame 54##AK123126|C19orf54|284325|chromosome 19 open reading frame 54##NM_001202553|MIA|8190|melanoma inhibitory activity##NM_006533|MIA|8190|melanoma inhibitory activity##X75450|MIA|8190|melanoma inhibitory activity##BC005910|MIA|8190|melanoma inhibitory activity##BT007044|MIA|8190|melanoma inhibitory activity##CR541648|MIA|8190|melanoma inhibitory activity##NM_016154|RAB4B|53916|RAB4B, member RAS oncogene family	1.486	0.0	denovo_WM_7:-76:0.499	denovo_WM_7:-91:0.987
chr3	114047278	114047425	reg1012858.p2	3.791	+	EU675310 NM_173799 AK097192 BC101288 BC101289 BC101290 BC101291	-34498	+	NM_007136 X65233	-90927	-	AY228457 AY228458 NM_000796 NM_033663 AY228454	-149435	-	AF139460 NM_001164342	55137	-	BC029041 NM_001164347	295701	-	AK315307 NM_001164346 TSC_hg19_v1_chr3_-_114343793	296443	-	EU675310|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_173799|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##AK097192|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101288|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101289|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101290|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##BC101291|TIGIT|201633|T cell immunoreceptor with Ig and ITIM domains##NM_007136|ZNF80|7634|zinc finger protein 80##X65233|ZNF80|7634|zinc finger protein 80##AY228457|DRD3|1814|dopamine receptor D3##AY228458|DRD3|1814|dopamine receptor D3##NM_000796|DRD3|1814|dopamine receptor D3##NM_033663|DRD3|1814|dopamine receptor D3##AY228454|DRD3|1814|dopamine receptor D3##AF139460|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164342|ZBTB20|26137|zinc finger and BTB domain containing 20##BC029041|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164347|ZBTB20|26137|zinc finger and BTB domain containing 20##AK315307|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164346|ZBTB20|26137|zinc finger and BTB domain containing 20	0.90704	0.0	denovo_WM_7:8:0.641
chr3	48075809	48075899	reg1016786.p2	3.791	+	TSC_hg19_v1_chr3_-_48040260 CU679053 EU831606 EU831693	-35550	-	TSC_hg19_v1_chr3_-_47957477 BX649077	-118311	-	TSC_hg19_v1_chr3_-_47934000 AK054696	-141824	-	TSC_hg19_v1_chr3_-_48130339 BC019229 BC067228 BC051843 M64571 U19727 AB209377 AK307606 BC008715 BC012794 BC015149 AK297242	54483	-	TSC_hg19_v1_chr3_-_48130743 AK054577 NM_001134364 NM_002375 NM_030885	54846	-	AF277722 AY137580 EU812118 CU675643 AB590275 DQ890753 DQ892919 DQ896168 AK290554 TSC_hg19_v1_chr3_-_48229511	153574	-	EU831606|MAP4|4134|microtubule-associated protein 4##EU831693|MAP4|4134|microtubule-associated protein 4##AK054696|MAP4|4134|microtubule-associated protein 4##BC019229|MAP4|4134|microtubule-associated protein 4##BC067228|MAP4|4134|microtubule-associated protein 4##BC051843|MAP4|4134|microtubule-associated protein 4##M64571|MAP4|4134|microtubule-associated protein 4##U19727|MAP4|4134|microtubule-associated protein 4##AB209377|MAP4|4134|microtubule-associated protein 4##AK307606|MAP4|4134|microtubule-associated protein 4##BC008715|MAP4|4134|microtubule-associated protein 4##BC012794|MAP4|4134|microtubule-associated protein 4##BC015149|MAP4|4134|microtubule-associated protein 4##AK297242|MAP4|4134|microtubule-associated protein 4##AK054577|MAP4|4134|microtubule-associated protein 4##NM_001134364|MAP4|4134|microtubule-associated protein 4##NM_002375|MAP4|4134|microtubule-associated protein 4##NM_030885|MAP4|4134|microtubule-associated protein 4##AF277722|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AY137580|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##EU812118|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ890753|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ892919|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##DQ896168|CDC25A|993|cell division cycle 25 homolog A (S. pombe)##AK290554|CDC25A|993|cell division cycle 25 homolog A (S. pombe)	0.0	0.0	
chr6	89088566	89088669	reg1016916.p2	3.791	+	NM_001160226 NM_001160258 NM_001160259 NM_016083	-212851	-	BC095513 AB527293 AY766182 AY995204 BC100968 BC100969 BC100970 BC100971 DQ067455 X81121 AF107262 BC074811 BC074812 NM_033181 X81120	-233581	-	BC029488 NM_030960 AF203447	-331087	+	AB009022 AB009023 AB009024 CU676488 AB385589 TSC_hg19_v1_chr6_-_89673246	584574	-	TSC_hg19_v1_chr6_-_89673338 AB012142 AB012143 BC019954 AK295719 AK312407 AK299777	584691	-	NM_003800 TSC_hg19_v1_chr6_-_89673347	584730	-	NM_001160226|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160258|CNR1|1268|cannabinoid receptor 1 (brain)##NM_001160259|CNR1|1268|cannabinoid receptor 1 (brain)##NM_016083|CNR1|1268|cannabinoid receptor 1 (brain)##BC095513|CNR1|1268|cannabinoid receptor 1 (brain)##AY766182|CNR1|1268|cannabinoid receptor 1 (brain)##AY995204|CNR1|1268|cannabinoid receptor 1 (brain)##BC100968|CNR1|1268|cannabinoid receptor 1 (brain)##BC100969|CNR1|1268|cannabinoid receptor 1 (brain)##BC100970|CNR1|1268|cannabinoid receptor 1 (brain)##BC100971|CNR1|1268|cannabinoid receptor 1 (brain)##DQ067455|CNR1|1268|cannabinoid receptor 1 (brain)##X81121|CNR1|1268|cannabinoid receptor 1 (brain)##AF107262|CNR1|1268|cannabinoid receptor 1 (brain)##BC074811|CNR1|1268|cannabinoid receptor 1 (brain)##BC074812|CNR1|1268|cannabinoid receptor 1 (brain)##NM_033181|CNR1|1268|cannabinoid receptor 1 (brain)##X81120|CNR1|1268|cannabinoid receptor 1 (brain)##BC029488|SPACA1|81833|sperm acrosome associated 1##NM_030960|SPACA1|81833|sperm acrosome associated 1##AF203447|SPACA1|81833|sperm acrosome associated 1##AB009022|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009023|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB009024|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012142|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AB012143|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##BC019954|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK295719|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK312407|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##AK299777|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase##NM_003800|RNGTT|8732|RNA guanylyltransferase and 5'-phosphatase	0.034179	0.0	
chr8	103252263	103252370	reg1006109.p2	3.791	+	AK304354 CR627376 NM_001172477 AB163437 AB163438 AB166669 AB166670 AB166671 EU831630 EU831715 HQ258190 AB527865 AK001965 TSC_hg19_v1_chr8_-_103251168 AL137348 BC108261 BC042948 BC117496 BC130628 AB036063 NM_001172478 NM_015713	-1143	-	NM_001040630	-115182	-	AK096515 TSC_hg19_v1_chr8_-_103136490 AF251061 BC036098 BC063428 NM_001040624 NM_001040625 NM_001040626 NM_001040627 NM_001040628 NM_001040629	-115793	-	TSC_hg19_v1_chr8_-_103424923 AB020703 BC151231 NM_015902	172595	-	NM_024410 AK315276 BC104456 BC104457	311545	+	BC011538 NM_001032282 S81439	413776	-	AK304354|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##CR627376|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172477|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163437|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB163438|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166669|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166670|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB166671|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831630|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##EU831715|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##HQ258190|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AK001965|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AL137348|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC108261|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC042948|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC117496|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##BC130628|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##AB036063|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001172478|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_015713|RRM2B|50484|ribonucleotide reductase M2 B (TP53 inducible)##NM_001040630|NCALD|83988|neurocalcin delta##AK096515|NCALD|83988|neurocalcin delta##AF251061|NCALD|83988|neurocalcin delta##BC036098|NCALD|83988|neurocalcin delta##BC063428|NCALD|83988|neurocalcin delta##NM_001040624|NCALD|83988|neurocalcin delta##NM_001040625|NCALD|83988|neurocalcin delta##NM_001040626|NCALD|83988|neurocalcin delta##NM_001040627|NCALD|83988|neurocalcin delta##NM_001040628|NCALD|83988|neurocalcin delta##NM_001040629|NCALD|83988|neurocalcin delta##AB020703|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##BC151231|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_015902|UBR5|51366|ubiquitin protein ligase E3 component n-recognin 5##NM_024410|ODF1|4956|outer dense fiber of sperm tails 1##AK315276|ODF1|4956|outer dense fiber of sperm tails 1##BC104456|ODF1|4956|outer dense fiber of sperm tails 1##BC104457|ODF1|4956|outer dense fiber of sperm tails 1##BC011538|KLF10|7071|Kruppel-like factor 10##NM_001032282|KLF10|7071|Kruppel-like factor 10##S81439|KLF10|7071|Kruppel-like factor 10	0.0	0.0	
chrX	69494044	69494110	reg1015434.p2	3.791	+	BC012096 NM_004312 AF033105	-5900	+	BC096067 BC096068 BC096069 BC096070 BC095503 NM_002565	-14493	-	NM_001013579 AB528120 AY947638	-39553	+	BC117239 BC143888 NM_001032726	7944	+	TSC_hg19_v1_chrX_-_69509768 BC012996 AY358829 AK024746 AK311539 AF151061 NM_016484 BX537725	15715	-	NM_012310 AK313133 BC003664 BC038459 AF071592 BC049218 AB208797 BC050548 BC011801	15854	+	BC012096|ARR3|407|arrestin 3, retinal (X-arrestin)##NM_004312|ARR3|407|arrestin 3, retinal (X-arrestin)##AF033105|ARR3|407|arrestin 3, retinal (X-arrestin)##BC096067|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC096068|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC096069|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC096070|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##BC095503|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##NM_002565|P2RY4|5030|pyrimidinergic receptor P2Y, G-protein coupled, 4##NM_001013579|AWAT1|158833|acyl-CoA wax alcohol acyltransferase 1##AY947638|AWAT1|158833|acyl-CoA wax alcohol acyltransferase 1##BC117239|RAB41|347517|RAB41, member RAS oncogene family##BC143888|RAB41|347517|RAB41, member RAS oncogene family##NM_001032726|RAB41|347517|RAB41, member RAS oncogene family##BC012996|PDZD11|51248|PDZ domain containing 11##AY358829|PDZD11|51248|PDZ domain containing 11##AK024746|PDZD11|51248|PDZ domain containing 11##AK311539|PDZD11|51248|PDZ domain containing 11##AF151061|PDZD11|51248|PDZ domain containing 11##NM_016484|PDZD11|51248|PDZ domain containing 11##BX537725|PDZD11|51248|PDZ domain containing 11##NM_012310|KIF4A|24137|kinesin family member 4A##AK313133|KIF4A|24137|kinesin family member 4A##BC003664|KIF4A|24137|kinesin family member 4A##BC038459|KIF4A|24137|kinesin family member 4A##AF071592|KIF4A|24137|kinesin family member 4A##BC049218|KIF4A|24137|kinesin family member 4A##AB208797|KIF4A|24137|kinesin family member 4A##BC050548|KIF4A|24137|kinesin family member 4A##BC011801|KIF4A|24137|kinesin family member 4A	0.995471	0.529542	denovo_WM_7:-16:0.234	denovo_WM_7:-17:0.234	denovo_WM_7:-18:0.234	denovo_WM_7:-19:0.234	CTCF.p2:23:0.530
chr10	103641243	103641399	reg1017944.p1	3.790	+	BC034685 TSC_hg19_v1_chr10_-_103603552 AK314536 AK315042 AK055089 AK094668 NM_014591 NM_173191 NM_173192 NM_173193 NM_173195 NM_173197	-37714	-	DQ148483 AB463824 AM392816 AK027347 AK301433 NM_173194 AL136722	-41709	-	TSC_hg19_v1_chr10_-_103578213 NM_001142434 NM_012215	-63103	-	TSC_hg19_v1_chr10_-_103815931 BC032118 AK126113 NM_024541 BC054882	174591	-	NM_024747 TSC_hg19_v1_chr10_+_103825159 BC014993 AF536238 BC011594	183821	+	AK300588 TSC_hg19_v1_chr10_-_103874641	233298	-	BC034685|KCNIP2|30819|Kv channel interacting protein 2##AK314536|KCNIP2|30819|Kv channel interacting protein 2##AK315042|KCNIP2|30819|Kv channel interacting protein 2##AK055089|KCNIP2|30819|Kv channel interacting protein 2##AK094668|KCNIP2|30819|Kv channel interacting protein 2##NM_014591|KCNIP2|30819|Kv channel interacting protein 2##NM_173191|KCNIP2|30819|Kv channel interacting protein 2##NM_173192|KCNIP2|30819|Kv channel interacting protein 2##NM_173193|KCNIP2|30819|Kv channel interacting protein 2##NM_173195|KCNIP2|30819|Kv channel interacting protein 2##NM_173197|KCNIP2|30819|Kv channel interacting protein 2##DQ148483|KCNIP2|30819|Kv channel interacting protein 2##AM392816|KCNIP2|30819|Kv channel interacting protein 2##AK027347|KCNIP2|30819|Kv channel interacting protein 2##AK301433|KCNIP2|30819|Kv channel interacting protein 2##NM_173194|KCNIP2|30819|Kv channel interacting protein 2##AL136722|KCNIP2|30819|Kv channel interacting protein 2##NM_001142434|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##NM_012215|MGEA5|10724|meningioma expressed antigen 5 (hyaluronidase)##BC032118|C10orf76|79591|chromosome 10 open reading frame 76##NM_024541|C10orf76|79591|chromosome 10 open reading frame 76##BC054882|C10orf76|79591|chromosome 10 open reading frame 76##NM_024747|HPS6|79803|Hermansky-Pudlak syndrome 6##BC014993|HPS6|79803|Hermansky-Pudlak syndrome 6##AF536238|HPS6|79803|Hermansky-Pudlak syndrome 6##BC011594|HPS6|79803|Hermansky-Pudlak syndrome 6##AK300588|LDB1|8861|LIM domain binding 1	0.0	0.0	
chr10	24672908	24672997	reg1013928.p2	3.790	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-174858	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-175164	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-689275	+	TSC_hg19_v1_chr10_+_24755441 AK300422	82492	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	82517	+	AK307604 TSC_hg19_v1_chr10_-_25012174	339221	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	0.0	0.0	
chr12	94773744	94773915	reg1010758.p1	3.790	+	TSC_hg19_v1_chr12_+_94542476 AF030339 NM_005761 BC029934 AB527325	-231325	+	NM_003805 AK296225 AK294986 AK314861 U79115 BC017042 U84388	-702646	+	BC040677 AK054607 AK098304 TSC_hg19_v1_chr12_-_93965675	-808228	-	BC125086 BC125087 AF155115 TSC_hg19_v1_chr12_-_94853610	79702	-	TSC_hg19_v1_chr12_-_94853612 BC011009 AK056316	79813	-	TSC_hg19_v1_chr12_-_94853765 BC053614 BC032943 NM_001042399 NM_016122	79903	-	AF030339|PLXNC1|10154|plexin C1##NM_005761|PLXNC1|10154|plexin C1##BC029934|PLXNC1|10154|plexin C1##NM_003805|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK296225|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK314861|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U79115|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##BC017042|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##U84388|CRADD|8738|CASP2 and RIPK1 domain containing adaptor with death domain##AK054607|LOC144481|144481|uncharacterized LOC144481##BC125086|CCDC41|51134|coiled-coil domain containing 41##BC125087|CCDC41|51134|coiled-coil domain containing 41##AF155115|CCDC41|51134|coiled-coil domain containing 41##BC011009|CCDC41|51134|coiled-coil domain containing 41##AK056316|CCDC41|51134|coiled-coil domain containing 41##BC053614|CCDC41|51134|coiled-coil domain containing 41##BC032943|CCDC41|51134|coiled-coil domain containing 41##NM_001042399|CCDC41|51134|coiled-coil domain containing 41##NM_016122|CCDC41|51134|coiled-coil domain containing 41	1.674332	0.0	denovo_WM_7:26:0.295	denovo_WM_7:27:0.278	denovo_WM_7:28:0.225	denovo_WM_7:43:0.380
chr13	20648121	20648236	reg1017962.p1	3.790	+	TSC_hg19_v1_chr13_+_20532911 AJ224901 BX647944 NM_001190965	-115213	+	TSC_hg19_v1_chr13_+_20532881 AK226118 AK289741	-115294	+	TSC_hg19_v1_chr13_+_20532834 BC036372 NM_003453 NM_197968 AL136621 NM_001190964 Y13472	-115361	+	NM_021954	87004	-	BC017048 BC071703 TSC_hg19_v1_chr13_-_20767078 AK225966	118880	-	TSC_hg19_v1_chr13_-_20767115 AK313595 NM_004004	118933	-	AJ224901|ZMYM2|7750|zinc finger, MYM-type 2##BX647944|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190965|ZMYM2|7750|zinc finger, MYM-type 2##AK226118|ZMYM2|7750|zinc finger, MYM-type 2##AK289741|ZMYM2|7750|zinc finger, MYM-type 2##BC036372|ZMYM2|7750|zinc finger, MYM-type 2##NM_003453|ZMYM2|7750|zinc finger, MYM-type 2##NM_197968|ZMYM2|7750|zinc finger, MYM-type 2##AL136621|ZMYM2|7750|zinc finger, MYM-type 2##NM_001190964|ZMYM2|7750|zinc finger, MYM-type 2##Y13472|ZMYM2|7750|zinc finger, MYM-type 2##NM_021954|GJA3|2700|gap junction protein, alpha 3, 46kDa##BC017048|GJB2|2706|gap junction protein, beta 2, 26kDa##BC071703|GJB2|2706|gap junction protein, beta 2, 26kDa##AK225966|GJB2|2706|gap junction protein, beta 2, 26kDa##AK313595|GJB2|2706|gap junction protein, beta 2, 26kDa##NM_004004|GJB2|2706|gap junction protein, beta 2, 26kDa	0.0	0.0	
chr19	58912871	58913026	reg1011219.p1	3.790	+	NM_001195135	-5492	+	TSC_hg19_v1_chr19_+_58898635 AK223106 AK311938 D28455 NM_001009 BC015405 BC018828 BC018151 BC035830 U14970	-14296	+	TSC_hg19_v1_chr19_-_58892398 BC029960 NM_001129730 NM_138466	-20532	-	TSC_hg19_v1_chr19_+_58920045 AK290068 BC033149 NM_173548	7099	+	BC017651 TSC_hg19_v1_chr19_+_58920143 AK298929	7182	+	AK057460 NM_003433	38640	-	NM_001195135|LOC646862|646862|uncharacterized LOC646862##AK223106|RPS5|6193|ribosomal protein S5##AK311938|RPS5|6193|ribosomal protein S5##D28455|RPS5|6193|ribosomal protein S5##NM_001009|RPS5|6193|ribosomal protein S5##BC015405|RPS5|6193|ribosomal protein S5##BC018828|RPS5|6193|ribosomal protein S5##BC018151|RPS5|6193|ribosomal protein S5##BC035830|RPS5|6193|ribosomal protein S5##U14970|RPS5|6193|ribosomal protein S5##BC029960|ZNF837|116412|zinc finger protein 837##NM_001129730|ZNF837|116412|zinc finger protein 837##NM_138466|ZNF837|116412|zinc finger protein 837##AK290068|ZNF584|201514|zinc finger protein 584##BC033149|ZNF584|201514|zinc finger protein 584##NM_173548|ZNF584|201514|zinc finger protein 584##BC017651|ZNF584|201514|zinc finger protein 584##AK298929|ZNF584|201514|zinc finger protein 584##AK057460|ZNF132|7691|zinc finger protein 132##NM_003433|ZNF132|7691|zinc finger protein 132	0.0	0.0	
chr2	207051432	207051522	reg1010454.p1	3.790	+	TSC_hg19_v1_chr2_+_207024617 AK291910 AK310096 D28350 BC067787 BC029316 BC004931 AB529032 CU688340 BT007079 CR456825	-26819	+	S81522 X60656 TSC_hg19_v1_chr2_+_207024348 BC000211 X60489	-27078	+	NM_001037663 NM_001959 NM_021121 TSC_hg19_v1_chr2_+_207024320	-27159	+	AK312917 BC067833 AK290976 NM_001098199 NM_005279	31221	-	TSC_hg19_v1_chr2_+_207139414 AK127271 NM_020923	87990	+	TSC_hg19_v1_chr2_+_207308286 AB009672 NM_003812 BC132763 BC132765	256856	+	AK291910|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK310096|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##D28350|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC067787|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC029316|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC004931|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BT007079|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##CR456825|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##S81522|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60656|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##BC000211|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##X60489|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##NM_001037663|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##NM_001959|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##NM_021121|EEF1B2|1933|eukaryotic translation elongation factor 1 beta 2##AK312917|GPR1|2825|G protein-coupled receptor 1##BC067833|GPR1|2825|G protein-coupled receptor 1##AK290976|GPR1|2825|G protein-coupled receptor 1##NM_001098199|GPR1|2825|G protein-coupled receptor 1##NM_005279|GPR1|2825|G protein-coupled receptor 1##AK127271|ZDBF2|57683|zinc finger, DBF-type containing 2##NM_020923|ZDBF2|57683|zinc finger, DBF-type containing 2##AB009672|ADAM23|8745|ADAM metallopeptidase domain 23##NM_003812|ADAM23|8745|ADAM metallopeptidase domain 23##BC132763|ADAM23|8745|ADAM metallopeptidase domain 23##BC132765|ADAM23|8745|ADAM metallopeptidase domain 23	0.998688	0.0	
chr3	50310424	50310559	reg1012189.p2	3.790	+	TSC_hg19_v1_chr3_+_50306602 BC013975 BC024220 AF217991 AB083186 EU832609 EU832680	-3865	+	AB209322 TSC_hg19_v1_chr3_+_50306434 U28369	-4119	+	AK308875 NM_001005914 NM_004636 TSC_hg19_v1_chr3_+_50305047	-5472	+	BC028000 NM_153215 AK095927 EU832119 EU832213	6039	+	U09585 BT019999 EU832626 EU832699 CU675591 TSC_hg19_v1_chr3_-_50329861 AK309114 BC001676 AK074763 BC001327 BC007265 BC007437 NM_006764	19372	-	TSC_hg19_v1_chr3_-_50336292 AF040706 NM_001200029 NM_001200018	25800	-	BC013975|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##BC024220|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AF217991|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AB083186|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##EU832609|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##EU832680|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AB209322|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##U28369|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##AK308875|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##NM_001005914|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##NM_004636|SEMA3B|7869|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B##BC028000|C3orf45|132228|chromosome 3 open reading frame 45##NM_153215|C3orf45|132228|chromosome 3 open reading frame 45##AK095927|C3orf45|132228|chromosome 3 open reading frame 45##EU832119|C3orf45|132228|chromosome 3 open reading frame 45##EU832213|C3orf45|132228|chromosome 3 open reading frame 45##U09585|IFRD2|7866|interferon-related developmental regulator 2##BT019999|IFRD2|7866|interferon-related developmental regulator 2##EU832626|IFRD2|7866|interferon-related developmental regulator 2##EU832699|IFRD2|7866|interferon-related developmental regulator 2##AK309114|IFRD2|7866|interferon-related developmental regulator 2##BC001676|IFRD2|7866|interferon-related developmental regulator 2##AK074763|IFRD2|7866|interferon-related developmental regulator 2##BC001327|IFRD2|7866|interferon-related developmental regulator 2##BC007265|IFRD2|7866|interferon-related developmental regulator 2##BC007437|IFRD2|7866|interferon-related developmental regulator 2##NM_006764|IFRD2|7866|interferon-related developmental regulator 2##AF040706|NAT6|24142|N-acetyltransferase 6 (GCN5-related)##NM_001200029|HYAL3|8372|hyaluronoglucosaminidase 3##NM_001200018|NAT6|24142|N-acetyltransferase 6 (GCN5-related)	0.0	0.84253	CTCF.p2:31:0.807
chr5	95285722	95285813	reg1018853.p1	3.790	+	TSC_hg19_v1_chr5_-_95158468 NM_001118890 NM_001243658 NM_001243659 NM_002064	-127247	-	AF162769 BT006689 CR450312 CR542165 DQ892497 DQ895709 CU679866 D21238 AF069668 BC106075 X76648 TSC_hg19_v1_chr5_-_95158431 AK311868 BC005304 BC010965	-127367	-	TSC_hg19_v1_chr5_+_95067531 CU691986 AB385392	-218231	+	AB527661 DQ891536 DQ894725 TSC_hg19_v1_chr5_-_95297556 AK297956 AK296870	11731	-	TSC_hg19_v1_chr5_-_95297609 BC028412 NM_012081	11918	-	AK308575 NM_001177876	462921	-	NM_001118890|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243658|GLRX|2745|glutaredoxin (thioltransferase)##NM_001243659|GLRX|2745|glutaredoxin (thioltransferase)##NM_002064|GLRX|2745|glutaredoxin (thioltransferase)##AF162769|GLRX|2745|glutaredoxin (thioltransferase)##BT006689|GLRX|2745|glutaredoxin (thioltransferase)##CR450312|GLRX|2745|glutaredoxin (thioltransferase)##CR542165|GLRX|2745|glutaredoxin (thioltransferase)##DQ892497|GLRX|2745|glutaredoxin (thioltransferase)##DQ895709|GLRX|2745|glutaredoxin (thioltransferase)##D21238|GLRX|2745|glutaredoxin (thioltransferase)##AF069668|GLRX|2745|glutaredoxin (thioltransferase)##BC106075|GLRX|2745|glutaredoxin (thioltransferase)##X76648|GLRX|2745|glutaredoxin (thioltransferase)##AK311868|GLRX|2745|glutaredoxin (thioltransferase)##BC005304|GLRX|2745|glutaredoxin (thioltransferase)##BC010965|GLRX|2745|glutaredoxin (thioltransferase)##DQ891536|ELL2|22936|elongation factor, RNA polymerase II, 2##DQ894725|ELL2|22936|elongation factor, RNA polymerase II, 2##AK297956|ELL2|22936|elongation factor, RNA polymerase II, 2##AK296870|ELL2|22936|elongation factor, RNA polymerase II, 2##BC028412|ELL2|22936|elongation factor, RNA polymerase II, 2##NM_012081|ELL2|22936|elongation factor, RNA polymerase II, 2##AK308575|PCSK1|5122|proprotein convertase subtilisin/kexin type 1##NM_001177876|PCSK1|5122|proprotein convertase subtilisin/kexin type 1	0.0	0.0	
chr9	114936889	114937002	reg1017008.p1	3.790	+	TSC_hg19_v1_chr9_+_114659446 AK314847 AB384716	-277478	+	TSC_hg19_v1_chr9_+_114659093 BC038711 D50840 NM_003358	-277831	+	AL833535 NM_173521	-391170	-	AK056704 TSC_hg19_v1_chr9_-_114937551 AY358746 BC060770 NM_022486 AK292868	575	-	TSC_hg19_v1_chr9_-_115095273 CU692212 BC044585 NM_001244898	158342	-	TSC_hg19_v1_chr9_-_115095900 AK001685 AK302558 CR749471 BC039896	158904	-	AK314847|UGCG|7357|UDP-glucose ceramide glucosyltransferase##BC038711|UGCG|7357|UDP-glucose ceramide glucosyltransferase##D50840|UGCG|7357|UDP-glucose ceramide glucosyltransferase##NM_003358|UGCG|7357|UDP-glucose ceramide glucosyltransferase##AL833535|C9orf84|158401|chromosome 9 open reading frame 84##NM_173521|C9orf84|158401|chromosome 9 open reading frame 84##AK056704|SUSD1|64420|sushi domain containing 1##AY358746|SUSD1|64420|sushi domain containing 1##BC060770|SUSD1|64420|sushi domain containing 1##NM_022486|SUSD1|64420|sushi domain containing 1##AK292868|SUSD1|64420|sushi domain containing 1##BC044585|PTBP3|9991|polypyrimidine tract binding protein 3##NM_001244898|PTBP3|9991|polypyrimidine tract binding protein 3##AK001685|PTBP3|9991|polypyrimidine tract binding protein 3##AK302558|PTBP3|9991|polypyrimidine tract binding protein 3##CR749471|PTBP3|9991|polypyrimidine tract binding protein 3##BC039896|PTBP3|9991|polypyrimidine tract binding protein 3	0.0	0.0	
chr1	107684500	107684680	reg1002364.p1	3.789	+	AB023193 TSC_hg19_v1_chr1_+_107683657	-986	+	BX538348 NM_001113226 NM_001113228 AK296533 BC030220 NM_014917 TSC_hg19_v1_chr1_+_107682856	-1848	+	NM_018137 TSC_hg19_v1_chr1_+_107599330 BC073866 AK226009 AK295541 AK297898 AY043278 BC013866 AK001421 BC002729 BC063446	-85225	+	TSC_hg19_v1_chr1_-_108231122 AF035442 AK300474 AK304088 AK316295 NM_001079874	546534	-	AK295166 AB527273 AF067817 AF118887 NM_006113 BC143969 TSC_hg19_v1_chr1_-_108507725	823010	-	AJ619961 NM_213651 AK292567	1050806	-	AB023193|NTNG1|22854|netrin G1##BX538348|NTNG1|22854|netrin G1##NM_001113226|NTNG1|22854|netrin G1##NM_001113228|NTNG1|22854|netrin G1##AK296533|NTNG1|22854|netrin G1##BC030220|NTNG1|22854|netrin G1##NM_014917|NTNG1|22854|netrin G1##NM_018137|PRMT6|55170|protein arginine methyltransferase 6##BC073866|PRMT6|55170|protein arginine methyltransferase 6##AK226009|PRMT6|55170|protein arginine methyltransferase 6##AK295541|PRMT6|55170|protein arginine methyltransferase 6##AK297898|PRMT6|55170|protein arginine methyltransferase 6##AY043278|PRMT6|55170|protein arginine methyltransferase 6##BC013866|PRMT6|55170|protein arginine methyltransferase 6##AK001421|PRMT6|55170|protein arginine methyltransferase 6##BC002729|PRMT6|55170|protein arginine methyltransferase 6##BC063446|PRMT6|55170|protein arginine methyltransferase 6##AF035442|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK300474|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK304088|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK316295|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_001079874|VAV3|10451|vav 3 guanine nucleotide exchange factor##AK295166|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF067817|VAV3|10451|vav 3 guanine nucleotide exchange factor##AF118887|VAV3|10451|vav 3 guanine nucleotide exchange factor##NM_006113|VAV3|10451|vav 3 guanine nucleotide exchange factor##BC143969|VAV3|10451|vav 3 guanine nucleotide exchange factor##AJ619961|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##NM_213651|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24##AK292567|SLC25A24|29957|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24	0.973323	0.0	denovo_WM_7:-68:0.466	denovo_WM_7:-69:0.475
chr11	108493788	108493892	reg1013866.p1	3.789	+	BC113119 BC117701 TSC_hg19_v1_chr11_-_108464372 AY099469 NM_015065 AB014524	-29436	-	TSC_hg19_v1_chr11_-_108369112 AK313534 AF533708 BC036526 NM_153705	-124645	-	BC059411 BC029536 AK303096 NM_152587	-155598	-	TSC_hg19_v1_chr11_+_108535795 AK296752 BC091521 AB040537 NM_004398 U28042 AK315216 BC093654 BC093656 AB209884 BC064921 BC049217	41974	+	TSC_hg19_v1_chr11_+_109292850 AK303693 NM_207645	799003	+	BC068577 TSC_hg19_v1_chr11_+_109292911 BC035798	799059	+	BC113119|EXPH5|23086|exophilin 5##BC117701|EXPH5|23086|exophilin 5##AY099469|EXPH5|23086|exophilin 5##NM_015065|EXPH5|23086|exophilin 5##AB014524|EXPH5|23086|exophilin 5##AK313534|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##AF533708|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC036526|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##NM_153705|KDELC2|143888|KDEL (Lys-Asp-Glu-Leu) containing 2##BC029536|C11orf65|160140|chromosome 11 open reading frame 65##AK303096|C11orf65|160140|chromosome 11 open reading frame 65##NM_152587|C11orf65|160140|chromosome 11 open reading frame 65##AK296752|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC091521|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB040537|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##NM_004398|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##U28042|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK315216|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093654|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC093656|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AB209884|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC064921|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##BC049217|DDX10|1662|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10##AK303693|C11orf87|399947|chromosome 11 open reading frame 87##NM_207645|C11orf87|399947|chromosome 11 open reading frame 87##BC068577|C11orf87|399947|chromosome 11 open reading frame 87##BC035798|C11orf87|399947|chromosome 11 open reading frame 87	0.020178	0.0	
chr1	167013589	167013714	reg1015715.p1	3.789	+	TSC_hg19_v1_chr1_+_166958503 AK302253 AK131066 DQ076156 GU383113 AK027810 NM_032858 BC028595 AB590622 CU688524	-55109	+	TSC_hg19_v1_chr1_+_166944753 GU383114	-68867	+	AB527117 AF503509 NM_199351 TSC_hg19_v1_chr1_-_166944658	-68969	-	CU687006 BC074830 BC074876 TSC_hg19_v1_chr1_-_167059615 BC107164 BC107165 AK312833 BC069705 BC069723 BC069745 BC069761 BC069789 NM_005814 U79725	46044	-	NM_001080426	50435	+	TSC_hg19_v1_chr1_+_167190127 NM_001198786 NM_002697 AK302525 AK303201 AK308004 AK091438 S66901 BC052274 X13403	176406	+	AK302253|MAEL|84944|maelstrom homolog (Drosophila)##AK131066|MAEL|84944|maelstrom homolog (Drosophila)##DQ076156|MAEL|84944|maelstrom homolog (Drosophila)##GU383113|MAEL|84944|maelstrom homolog (Drosophila)##AK027810|MAEL|84944|maelstrom homolog (Drosophila)##NM_032858|MAEL|84944|maelstrom homolog (Drosophila)##BC028595|MAEL|84944|maelstrom homolog (Drosophila)##GU383114|MAEL|84944|maelstrom homolog (Drosophila)##AF503509|ILDR2|387597|immunoglobulin-like domain containing receptor 2##NM_199351|ILDR2|387597|immunoglobulin-like domain containing receptor 2##BC074830|GPA33|10223|glycoprotein A33 (transmembrane)##BC074876|GPA33|10223|glycoprotein A33 (transmembrane)##BC107164|GPA33|10223|glycoprotein A33 (transmembrane)##BC107165|GPA33|10223|glycoprotein A33 (transmembrane)##AK312833|GPA33|10223|glycoprotein A33 (transmembrane)##BC069705|GPA33|10223|glycoprotein A33 (transmembrane)##BC069723|GPA33|10223|glycoprotein A33 (transmembrane)##BC069745|GPA33|10223|glycoprotein A33 (transmembrane)##BC069761|GPA33|10223|glycoprotein A33 (transmembrane)##BC069789|GPA33|10223|glycoprotein A33 (transmembrane)##NM_005814|GPA33|10223|glycoprotein A33 (transmembrane)##U79725|GPA33|10223|glycoprotein A33 (transmembrane)##NM_001080426|DUSP27|92235|dual specificity phosphatase 27 (putative)##NM_001198786|POU2F1|5451|POU class 2 homeobox 1##NM_002697|POU2F1|5451|POU class 2 homeobox 1##AK302525|POU2F1|5451|POU class 2 homeobox 1##AK303201|POU2F1|5451|POU class 2 homeobox 1##AK308004|POU2F1|5451|POU class 2 homeobox 1##AK091438|POU2F1|5451|POU class 2 homeobox 1##BC052274|POU2F1|5451|POU class 2 homeobox 1##X13403|POU2F1|5451|POU class 2 homeobox 1	1.872044	0.0	denovo_WM_7:53:0.424	denovo_WM_7:54:0.424	denovo_WM_7:76:0.875
chr12	39751774	39751856	reg1013587.p2	3.789	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	-452432	-	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	-1041190	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-5576342	+	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	85184	-	AK314254 NM_005164	262027	-	BC038754 NM_001031748 BC048120 AK097445	268180	+	AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A##AK314254|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##NM_005164|ABCD2|225|ATP-binding cassette, sub-family D (ALD), member 2##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40	2.989938	0.0	denovo_WM_7:-63:0.491	denovo_WM_7:-64:0.295	denovo_WM_7:-78:0.201	denovo_WM_7:-79:0.298	denovo_WM_7:-80:0.297	denovo_WM_7:-95:0.299	denovo_WM_7:-96:0.496
chr16	24917782	24917909	reg1001694.p2	3.789	+	AY044906 NM_052944 AK298373 AK125267	-60252	+	TSC_hg19_v1_chr16_+_24802422 AL833757	-115364	+	AY035864 TSC_hg19_v1_chr16_+_24788680	-129221	+	TSC_hg19_v1_chr16_-_24942663 AK001170	24846	-	AK125358 TSC_hg19_v1_chr16_-_24968918	51047	-	AJ306731 AJ306732 TSC_hg19_v1_chr16_-_25026604	108767	-	AY044906|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##NM_052944|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK298373|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AK125267|SLC5A11|115584|solute carrier family 5 (sodium/glucose cotransporter), member 11##AL833757|TNRC6A|27327|trinucleotide repeat containing 6A##AY035864|TNRC6A|27327|trinucleotide repeat containing 6A##AK001170|ARHGAP17|55114|Rho GTPase activating protein 17##AK125358|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306731|ARHGAP17|55114|Rho GTPase activating protein 17##AJ306732|ARHGAP17|55114|Rho GTPase activating protein 17	0.0	0.0	
chr17_ctg5_hap1	493461	493629	reg1005222.p1	3.789	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.0	0.328993	CTCF.p2:11:0.329
chr7	74508252	74508375	reg1010921.p2	3.789	+	TSC_hg19_v1_chr7_-_74489687 BC040695 NM_030798	-18621	-	BC032712 TSC_hg19_v1_chr7_-_74489639 AK057870	-18675	-	AB463349 AF410455 AM392683 DQ893169 TSC_hg19_v1_chr7_-_74489627 AL136804 AK309117 BC007823 BC019008	-18711	-	NM_001003795 AK098269 AY312850 AK291431 BC067859 BC136849 AK225845 AY312853 AY312851	61	+	NM_001145064 BC147030 BC147031 TSC_hg19_v1_chr7_-_74867623 BC150658 AK299175 BC045632	359207	-	AK316130 AY313779 BC108680 AK289466 AK307228 AK309007 BC010433 TSC_hg19_v1_chr7_+_74988510 AK303592 BC066937	480257	+	BC040695|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_030798|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC032712|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK057870|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AF410455|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AM392683|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##DQ893169|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AL136804|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##AK309117|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC007823|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##BC019008|WBSCR16|81554|Williams-Beuren syndrome chromosome region 16##NM_001003795|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK098269|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312850|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK291431|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##BC067859|GTF2IRD2|84163|GTF2I repeat domain containing 2##BC136849|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##AK225845|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312853|GTF2IRD2|84163|GTF2I repeat domain containing 2##AY312851|GTF2IRD2B|389524|GTF2I repeat domain containing 2B##NM_001145064|GATSL2|729438|GATS protein-like 2##BC147030|GATSL2|729438|GATS protein-like 2##BC147031|GATSL2|729438|GATS protein-like 2##BC150658|GATSL2|729438|GATS protein-like 2##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK316130|STAG3L1|54441|stromal antigen 3-like 1##AY313779|STAG3L3|442578|stromal antigen 3-like 3##BC108680|STAG3L3|442578|stromal antigen 3-like 3##AK289466|STAG3L1|54441|stromal antigen 3-like 1##AK307228|STAG3L2|442582|stromal antigen 3-like 2##AK309007|STAG3L2|442582|stromal antigen 3-like 2##BC010433|STAG3L1|54441|stromal antigen 3-like 1##AK303592|STAG3L3|442578|stromal antigen 3-like 3##BC066937|STAG3L3|442578|stromal antigen 3-like 3	0.070441	0.0	
chr9	125152201	125152325	reg1016739.p1	3.789	+	AK304403 TSC_hg19_v1_chr9_+_125137614	-14656	+	TSC_hg19_v1_chr9_+_125133330 AK290022 M59979 AB590429 DQ180740 DQ180741 DQ180742 S36219 S36271 S78220	-18921	+	NM_000962 NM_080591 TSC_hg19_v1_chr9_+_125133302 BC029840	-18992	+	NM_001004451 AB529234 BC136933 BC136938	87956	-	AB528201 NM_054107	120817	+	AB529305 NM_001004452 BC131606	129156	+	AK304403|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##AK290022|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##M59979|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##DQ180740|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##DQ180741|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##DQ180742|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##S36219|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##S36271|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##S78220|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##NM_000962|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##NM_080591|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##BC029840|PTGS1|5742|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)##NM_001004451|OR1J1|347168|olfactory receptor, family 1, subfamily J, member 1##BC136933|OR1J1|347168|olfactory receptor, family 1, subfamily J, member 1##BC136938|OR1J1|347168|olfactory receptor, family 1, subfamily J, member 1##NM_054107|OR1J2|26740|olfactory receptor, family 1, subfamily J, member 2##NM_001004452|OR1J4|26219|olfactory receptor, family 1, subfamily J, member 4##BC131606|OR1J4|26219|olfactory receptor, family 1, subfamily J, member 4	0.010388	0.0	
chrX	56801656	56801747	reg1003185.p1	3.789	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-46010	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-211650	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-542791	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	220270	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	346227	-	BC071694 NM_019003	362356	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.0	
chr1	117094241	117094378	reg1016356.p2	3.788	+	TSC_hg19_v1_chr1_-_116961216 AK309389	-133071	-	TSC_hg19_v1_chr1_-_116961205 BC007373 BC018892 BC028281 BC069003 AK309872 BC098428	-133119	-	AK296362 NM_001160234	-168318	+	BT019816 BT019817 CR456939 AB590613 Y00636 TSC_hg19_v1_chr1_-_117113615 X06296	19306	-	TSC_hg19_v1_chr1_-_117113649 AK291980 BC005930 NM_001144822 NM_001779	19368	-	TSC_hg19_v1_chr1_-_117210323 NM_001007237 NM_001542 BC110651	116074	-	AK309389|ATP1A1OS|84852|ATP1A1 opposite strand##BC007373|ATP1A1OS|84852|ATP1A1 opposite strand##BC018892|ATP1A1OS|84852|ATP1A1 opposite strand##BC028281|ATP1A1OS|84852|ATP1A1 opposite strand##BC069003|ATP1A1OS|84852|ATP1A1 opposite strand##AK309872|ATP1A1OS|84852|ATP1A1 opposite strand##BC098428|ATP1A1OS|84852|ATP1A1 opposite strand##AK296362|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##NM_001160234|ATP1A1|476|ATPase, Na+/K+ transporting, alpha 1 polypeptide##BT019816|CD58|965|CD58 molecule##BT019817|CD58|965|CD58 molecule##CR456939|CD58|965|CD58 molecule##Y00636|CD58|965|CD58 molecule##X06296|CD58|965|CD58 molecule##AK291980|CD58|965|CD58 molecule##BC005930|CD58|965|CD58 molecule##NM_001144822|CD58|965|CD58 molecule##NM_001779|CD58|965|CD58 molecule##NM_001007237|IGSF3|3321|immunoglobulin superfamily, member 3##NM_001542|IGSF3|3321|immunoglobulin superfamily, member 3##BC110651|IGSF3|3321|immunoglobulin superfamily, member 3	1.977504	0.0	denovo_WM_7:37:0.773	denovo_WM_7:58:0.716
chr1	202453273	202453411	reg1014011.p2	3.788	+	AB050641 AB050642 NM_032103 NM_032104	-21472	+	TSC_hg19_v1_chr1_+_202317826 AK307591 NM_001167857 NM_001167858 NM_002481 AB003062 AF324888 BC144699 BC110907 BC034430 BC071166	-135469	+	TSC_hg19_v1_chr1_-_202311082 AF161499 NM_014176	-142256	-	AB588820 NM_001197131 TSC_hg19_v1_chr1_+_202509319	55938	+	AK094430 NM_001136504	159238	-	BC100814 BC100815 BC100816 BC100817 AK090672 NM_177402 TSC_hg19_v1_chr1_-_202679575	226157	-	AB050641|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB050642|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_032103|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_032104|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AK307591|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167857|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001167858|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_002481|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AB003062|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF324888|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC144699|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC110907|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC034430|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##BC071166|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AF161499|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##NM_014176|UBE2T|29089|ubiquitin-conjugating enzyme E2T (putative)##AB588820|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001197131|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AK094430|SYT2|127833|synaptotagmin II##NM_001136504|SYT2|127833|synaptotagmin II##BC100814|SYT2|127833|synaptotagmin II##BC100815|SYT2|127833|synaptotagmin II##BC100816|SYT2|127833|synaptotagmin II##BC100817|SYT2|127833|synaptotagmin II##AK090672|SYT2|127833|synaptotagmin II##NM_177402|SYT2|127833|synaptotagmin II	0.011707	0.0	
chr15	22412381	22412483	reg1018040.p1	3.788	+	BC136597 BC136598 NM_001005241 DQ786223	-29987	+	BC136985 NM_001004719	-43955	+	NM_207355 BC066981	-329294	-	DQ524033 DQ454451 TSC_hg19_v1_chr15_-_22473107 DQ454627 AF343362 EU433867 DQ454583 DQ454461 DQ454478 DQ454710 GQ232839 DQ454494 DQ454810 DQ454920 DQ454517 DQ454648 DQ454831 DQ454837 DQ454839 DQ454830 EF091921 EU350427 GQ232820 GQ232886 DQ454775 EU099074 EU099080 EU099197 DQ454762 AM279532 S79246 FJ385352 FJ385386 FJ385412 U86668 S73132 DQ454486 DQ454484 DQ523962 DQ523967 DQ524021 DQ524117 DQ524132 DQ524138 HM996399 DQ926110 HM995525 AB363221 AJ132847 AJ300792 AY686939 AY941876 AY941978 HM995325 HM995448 HM995452 HM995524 HM995543 HM995544 HM995546 HM995547 HM995794 HM995826 AB063656 AB063670 AB363087 AF062233 AJ244946 AJ245002 AJ245015 AJ245026 AJ245030 AJ279514 AJ279520 AJ279522 AJ579204 AY670752 AY670765 AY670783 AY671055 AY671074 AY671080 AY671081 AY671306 AY671333 AY671362 AY671391 AY671498 AY671678 AY671740 AY671743 AY671757 AY941972 AY941973 AY941975 AY941977 AY941979 DQ431529 DQ431542 HQ689717 U00532 U96389 Z46285 AY686870 AY686907 AY686931 AY944698 AY944714 AY944717 DQ535422 EF178066 EF178072 AY671309 X54445 AY671174 AY671312 AF062120 AF062232 X65905 X65906 X65908 X65909 X65910 Z75399	60790	-	AK097517 NM_001001413	323813	+	NM_001102610 NM_052903 TSC_hg19_v1_chr15_+_22833498 BC039271 AF272884 AB067486 AK056416 AK289859 AK310897 BC071560	421038	+	BC136597|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136598|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##NM_001005241|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_207355|POTEB|339010|POTE ankyrin domain family, member B##BC066981|POTEB|339010|POTE ankyrin domain family, member B##AK097517|GOLGA6L1|283767|golgin A6 family-like 1##NM_001001413|GOLGA6L1|283767|golgin A6 family-like 1##NM_001102610|TUBGCP5|114791|tubulin, gamma complex associated protein 5##NM_052903|TUBGCP5|114791|tubulin, gamma complex associated protein 5##BC039271|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AF272884|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AB067486|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK056416|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK289859|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK310897|TUBGCP5|114791|tubulin, gamma complex associated protein 5##BC071560|TUBGCP5|114791|tubulin, gamma complex associated protein 5	0.0	0.0	
chr17	28177077	28177159	reg1010291.p1	3.788	+	TSC_hg19_v1_chr17_-_28088446 BC011636	-88660	-	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-227267	-	AK096431 NM_032854	-228726	-	AK302745 AK303060 NM_001145053 AK299608	79778	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	80015	-	NM_198529 BX648689 BC137519	91586	+	BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_198529|EFCAB5|374786|EF-hand calcium binding domain 5##BX648689|EFCAB5|374786|EF-hand calcium binding domain 5##BC137519|EFCAB5|374786|EF-hand calcium binding domain 5	0.994586	0.0	
chr19	1038143	1038299	reg1004261.p2	3.788	+	AK024835 AK057960 AK293171 TSC_hg19_v1_chr19_+_1026627 BC141818 BC141833 D83735 AK222924 AK300788 D86059 BC148264 CR541810 CR541831 AY927510 AY927514	-11559	+	TSC_hg19_v1_chr19_+_1026625 AK297774	-11597	+	TSC_hg19_v1_chr19_+_1026609 AK126391	-11611	+	TSC_hg19_v1_chr19_+_1040105 NM_019112	1871	+	AK310127 TSC_hg19_v1_chr19_+_1040114 AK301108 AK310909	1913	+	TSC_hg19_v1_chr19_+_1067170 BC065223 NM_012292	28922	+	AK024835|CNN2|1265|calponin 2##AK057960|CNN2|1265|calponin 2##AK293171|CNN2|1265|calponin 2##BC141818|CNN2|1265|calponin 2##BC141833|CNN2|1265|calponin 2##D83735|CNN2|1265|calponin 2##AK222924|CNN2|1265|calponin 2##AK300788|CNN2|1265|calponin 2##D86059|CNN2|1265|calponin 2##BC148264|CNN2|1265|calponin 2##CR541810|CNN2|1265|calponin 2##CR541831|CNN2|1265|calponin 2##AY927514|CNN2|1265|calponin 2##AK297774|CNN2|1265|calponin 2##AK126391|CNN2|1265|calponin 2##NM_019112|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310127|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK301108|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##AK310909|ABCA7|10347|ATP-binding cassette, sub-family A (ABC1), member 7##BC065223|HMHA1|23526|histocompatibility (minor) HA-1##NM_012292|HMHA1|23526|histocompatibility (minor) HA-1	0.0	0.0	
chr2	204358145	204358222	reg1013545.p2	3.788	+	TSC_hg19_v1_chr2_+_204193004 NM_005759 AK311427 AK302853 AK294429 AK299824 AK316000 BC001439 AB590360 AF260261 BT009920 CU674706 DQ890735 DQ893907	-165048	+	TSC_hg19_v1_chr2_+_204103740 AF183412 AK297082 BC093022 BC033752 BC020616 AL832998 AY359068 AK307931 DQ890918 DQ894068 DQ894069 CU676580	-254462	+	NM_177538	-255020	+	TSC_hg19_v1_chr2_-_204399987 BC032486 AK096270 AB053311 AJ584699 AY494951 AY523977 AY523978 NM_203365 NM_213589	41963	-	NM_001243077 NM_001243078 NM_006139 AJ517504 AK313313 J02988 TSC_hg19_v1_chr2_+_204571361 AK303421	213097	+	BC093698 BC112085 TSC_hg19_v1_chr2_+_204571384 AK292986 AB590652 AF222341 AF222342 AF222343 AJ295273	213216	+	NM_005759|ABI2|10152|abl-interactor 2##AK302853|ABI2|10152|abl-interactor 2##AK294429|ABI2|10152|abl-interactor 2##AK299824|ABI2|10152|abl-interactor 2##AK316000|ABI2|10152|abl-interactor 2##BC001439|ABI2|10152|abl-interactor 2##AF260261|ABI2|10152|abl-interactor 2##BT009920|ABI2|10152|abl-interactor 2##DQ890735|ABI2|10152|abl-interactor 2##DQ893907|ABI2|10152|abl-interactor 2##AF183412|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK297082|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC093022|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC033752|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##BC020616|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AL832998|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AY359068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK307931|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ890918|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894068|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##DQ894069|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##NM_177538|CYP20A1|57404|cytochrome P450, family 20, subfamily A, polypeptide 1##AK096270|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AB053311|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AJ584699|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY494951|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY523977|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##AY523978|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_203365|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_213589|RAPH1|65059|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1##NM_001243077|CD28|940|CD28 molecule##NM_001243078|CD28|940|CD28 molecule##NM_006139|CD28|940|CD28 molecule##AJ517504|CD28|940|CD28 molecule##AK313313|CD28|940|CD28 molecule##J02988|CD28|940|CD28 molecule##AK303421|CD28|940|CD28 molecule##BC093698|CD28|940|CD28 molecule##BC112085|CD28|940|CD28 molecule##AK292986|CD28|940|CD28 molecule##AF222341|CD28|940|CD28 molecule##AF222342|CD28|940|CD28 molecule##AF222343|CD28|940|CD28 molecule##AJ295273|CD28|940|CD28 molecule	0.0	0.0	
chr2	24538692	24538811	reg1012880.p1	3.788	+	BC050462 NM_001040710	-140780	+	TSC_hg19_v1_chr2_+_24346339 NM_001145710	-192392	+	TSC_hg19_v1_chr2_-_24346174 BC029523 NM_199346 BC043236 AK292601	-192507	-	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	44729	-	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	268626	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	477487	-	BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##NM_001145710|LOC375190|375190|UPF0638 protein B##BC029523|PFN4|375189|profilin family, member 4##NM_199346|PFN4|375189|profilin family, member 4##BC043236|PFN4|375189|profilin family, member 4##AK292601|PFN4|375189|profilin family, member 4##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1	0.0	0.0	
chr15	66301819	66301984	reg1005116.p2	3.787	+	TSC_hg19_v1_chr15_+_66161828 AK297549 AK298961 NM_001206836 NM_004663 AK311770 BC013348 AF000231 X56740 AK300008 AF498946 BT020151 BT020154 CR407669 CR536493 DQ893054 DQ896303 X53143	-140054	+	AK299570 TSC_hg19_v1_chr15_-_66084632 AF534403 AK091368 AX746940 AK307411 NM_001144823 NM_005848	-217308	-	AK290292 TSC_hg19_v1_chr15_-_66084442 AL833317 BC041706 BC028057	-217428	-	TSC_hg19_v1_chr15_-_66321664 AK054827	19792	-	BC117419 BC126313 AB058677 NM_032445 BC029999 TSC_hg19_v1_chr15_-_66546155	244176	-	NM_133375 AK295392 BC022089	283744	+	AK297549|RAB11A|8766|RAB11A, member RAS oncogene family##AK298961|RAB11A|8766|RAB11A, member RAS oncogene family##NM_001206836|RAB11A|8766|RAB11A, member RAS oncogene family##NM_004663|RAB11A|8766|RAB11A, member RAS oncogene family##AK311770|RAB11A|8766|RAB11A, member RAS oncogene family##BC013348|RAB11A|8766|RAB11A, member RAS oncogene family##AF000231|RAB11A|8766|RAB11A, member RAS oncogene family##X56740|RAB11A|8766|RAB11A, member RAS oncogene family##AK300008|RAB11A|8766|RAB11A, member RAS oncogene family##AF498946|RAB11A|8766|RAB11A, member RAS oncogene family##BT020151|RAB11A|8766|RAB11A, member RAS oncogene family##BT020154|RAB11A|8766|RAB11A, member RAS oncogene family##CR407669|RAB11A|8766|RAB11A, member RAS oncogene family##CR536493|RAB11A|8766|RAB11A, member RAS oncogene family##DQ893054|RAB11A|8766|RAB11A, member RAS oncogene family##DQ896303|RAB11A|8766|RAB11A, member RAS oncogene family##X53143|RAB11A|8766|RAB11A, member RAS oncogene family##AK299570|DENND4A|10260|DENN/MADD domain containing 4A##AF534403|DENND4A|10260|DENN/MADD domain containing 4A##AK091368|DENND4A|10260|DENN/MADD domain containing 4A##AK307411|DENND4A|10260|DENN/MADD domain containing 4A##NM_001144823|DENND4A|10260|DENN/MADD domain containing 4A##NM_005848|DENND4A|10260|DENN/MADD domain containing 4A##AK290292|DENND4A|10260|DENN/MADD domain containing 4A##AL833317|DENND4A|10260|DENN/MADD domain containing 4A##BC041706|DENND4A|10260|DENN/MADD domain containing 4A##BC028057|DENND4A|10260|DENN/MADD domain containing 4A##BC117419|MEGF11|84465|multiple EGF-like-domains 11##BC126313|MEGF11|84465|multiple EGF-like-domains 11##AB058677|MEGF11|84465|multiple EGF-like-domains 11##NM_032445|MEGF11|84465|multiple EGF-like-domains 11##BC029999|MEGF11|84465|multiple EGF-like-domains 11##NM_133375|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##AK295392|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like##BC022089|DIS3L|115752|DIS3 mitotic control homolog (S. cerevisiae)-like	0.99483	0.0	denovo_WM_7:38:0.332	denovo_WM_7:39:0.332	denovo_WM_7:40:0.332
chr2	232537270	232537336	reg1015392.p2	3.787	+	BC024251 NM_152614 BC034405 BC063389 DQ891288 DQ894472	-79686	+	AF272362 BC051914 AK300222 AK301102 NM_006056 BC036543	-142149	-	BC033054 TSC_hg19_v1_chr2_-_232379076	-158221	-	TSC_hg19_v1_chr2_+_232573239 NM_001099285 NM_002823 BC022433 AK223605 AK314106 M14630 BC034921	35931	+	BC001624 BC098420 BC070480 BC003510 BC051265 BC071879 BC071647 TSC_hg19_v1_chr2_+_232573265 M26708 M14483 BC066905 M14794 DQ892963 DQ896210 AF170294 AF348514 AY169282	36029	+	BT007278 CR456980 AB464015 DQ893223 DQ896553 AJ001626 TSC_hg19_v1_chr2_-_232645990 BC007831 AF022912 NM_002601 BC001054 AK311623	108622	-	NM_152614|C2orf57|165100|chromosome 2 open reading frame 57##BC034405|C2orf57|165100|chromosome 2 open reading frame 57##BC063389|C2orf57|165100|chromosome 2 open reading frame 57##DQ891288|C2orf57|165100|chromosome 2 open reading frame 57##DQ894472|C2orf57|165100|chromosome 2 open reading frame 57##AF272362|NMUR1|10316|neuromedin U receptor 1##BC051914|NMUR1|10316|neuromedin U receptor 1##AK300222|NMUR1|10316|neuromedin U receptor 1##NM_006056|NMUR1|10316|neuromedin U receptor 1##BC036543|NMUR1|10316|neuromedin U receptor 1##BC033054|LINC00471|151477|long intergenic non-protein coding RNA 471##NM_001099285|PTMA|5757|prothymosin, alpha##NM_002823|PTMA|5757|prothymosin, alpha##BC022433|PTMA|5757|prothymosin, alpha##AK223605|PTMA|5757|prothymosin, alpha##AK314106|PTMA|5757|prothymosin, alpha##M14630|PTMA|5757|prothymosin, alpha##BC034921|PTMA|5757|prothymosin, alpha##BC098420|PTMA|5757|prothymosin, alpha##BC070480|PTMA|5757|prothymosin, alpha##BC003510|PTMA|5757|prothymosin, alpha##BC051265|PTMA|5757|prothymosin, alpha##BC071879|PTMA|5757|prothymosin, alpha##BC071647|PTMA|5757|prothymosin, alpha##M26708|PTMA|5757|prothymosin, alpha##M14483|PTMA|5757|prothymosin, alpha##BC066905|PTMA|5757|prothymosin, alpha##M14794|PTMA|5757|prothymosin, alpha##DQ892963|PTMA|5757|prothymosin, alpha##DQ896210|PTMA|5757|prothymosin, alpha##AF348514|PTMA|5757|prothymosin, alpha##AY169282|PTMA|5757|prothymosin, alpha##BT007278|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##CR456980|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ893223|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##DQ896553|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AJ001626|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC007831|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##AF022912|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##NM_002601|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta##BC001054|PDE6D|5147|phosphodiesterase 6D, cGMP-specific, rod, delta	0.0	0.0	
chr22	40915663	40915788	reg1013653.p1	3.787	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	-56295	-	TSC_hg19_v1_chr22_+_40766652 AK301042	-149070	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-149084	+	TSC_hg19_v1_chr22_-_41032681 AF368061	116928	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	116979	-	AK314857 AF490537 NM_005297 BC001736 BC021146 AY745811 AY747629 CR456497 AB063174 CU013094 CU013382 AB463112 AY562945 BT006725 DQ893603 DQ895065	159496	+	AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AK314857|MCHR1|2847|melanin-concentrating hormone receptor 1##AF490537|MCHR1|2847|melanin-concentrating hormone receptor 1##NM_005297|MCHR1|2847|melanin-concentrating hormone receptor 1##BC001736|MCHR1|2847|melanin-concentrating hormone receptor 1##BC021146|MCHR1|2847|melanin-concentrating hormone receptor 1##AY745811|MCHR1|2847|melanin-concentrating hormone receptor 1##AY747629|MCHR1|2847|melanin-concentrating hormone receptor 1##CR456497|MCHR1|2847|melanin-concentrating hormone receptor 1##AB063174|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013094|MCHR1|2847|melanin-concentrating hormone receptor 1##CU013382|MCHR1|2847|melanin-concentrating hormone receptor 1##AY562945|MCHR1|2847|melanin-concentrating hormone receptor 1##BT006725|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ893603|MCHR1|2847|melanin-concentrating hormone receptor 1##DQ895065|MCHR1|2847|melanin-concentrating hormone receptor 1	0.28358	0.0	denovo_WM_7:-83:0.210
chr3	52318447	52318569	reg1017160.p1	3.787	+	TSC_hg19_v1_chr3_-_52312656 NM_025222	-5852	-	TSC_hg19_v1_chr3_-_52312406 AB590669 AY358264 BX648628 AK291380	-6118	-	BC018941 AK074290 TSC_hg19_v1_chr3_-_52294468	-24061	-	AF448855 AY172690 BC036862 NM_001144951 NM_145262 TSC_hg19_v1_chr3_+_52321852 AK074215	3335	+	TSC_hg19_v1_chr3_+_52321862 BC042151 BC021896	3366	+	AB037831 AB290163 NM_015512	31826	+	NM_025222|WDR82|80335|WD repeat domain 82##AY358264|WDR82|80335|WD repeat domain 82##BX648628|WDR82|80335|WD repeat domain 82##AK291380|WDR82|80335|WD repeat domain 82##BC018941|WDR82|80335|WD repeat domain 82##AK074290|WDR82|80335|WD repeat domain 82##AF448855|GLYCTK|132158|glycerate kinase##AY172690|GLYCTK|132158|glycerate kinase##BC036862|GLYCTK|132158|glycerate kinase##NM_001144951|GLYCTK|132158|glycerate kinase##NM_145262|GLYCTK|132158|glycerate kinase##AK074215|GLYCTK|132158|glycerate kinase##BC042151|GLYCTK|132158|glycerate kinase##BC021896|GLYCTK|132158|glycerate kinase##AB037831|DNAH1|25981|dynein, axonemal, heavy chain 1##AB290163|DNAH1|25981|dynein, axonemal, heavy chain 1##NM_015512|DNAH1|25981|dynein, axonemal, heavy chain 1	0.991588	0.0	denovo_WM_7:2:0.835
chr4	174179038	174179171	reg1017620.p1	3.787	+	BC040577 TSC_hg19_v1_chr4_-_174090813	-88297	-	BC043556 TSC_hg19_v1_chr4_-_174090314	-88794	-	TSC_hg19_v1_chr4_+_174089961 NM_017423 BC046129 BC047468 AJ002744 CU690424	-89152	+	Z17240 BT019782 BT019783 AB463732 DQ892288 DQ895487 NM_001130689 TSC_hg19_v1_chr4_-_174255014	75771	-	BC001063 BC100019 BC021054 TSC_hg19_v1_chr4_-_174255505 BC000903 AK311864 NM_001130688 NM_002129	76425	-	TSC_hg19_v1_chr4_+_174292088 NM_003864 AF055993	112959	+	NM_017423|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC046129|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##BC047468|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##AJ002744|GALNT7|51809|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)##Z17240|HMGB2|3148|high mobility group box 2##BT019782|HMGB2|3148|high mobility group box 2##BT019783|HMGB2|3148|high mobility group box 2##DQ892288|HMGB2|3148|high mobility group box 2##DQ895487|HMGB2|3148|high mobility group box 2##NM_001130689|HMGB2|3148|high mobility group box 2##BC001063|HMGB2|3148|high mobility group box 2##BC100019|HMGB2|3148|high mobility group box 2##BC000903|HMGB2|3148|high mobility group box 2##AK311864|HMGB2|3148|high mobility group box 2##NM_001130688|HMGB2|3148|high mobility group box 2##NM_002129|HMGB2|3148|high mobility group box 2##NM_003864|SAP30|8819|Sin3A-associated protein, 30kDa##AF055993|SAP30|8819|Sin3A-associated protein, 30kDa	0.0	0.0	
chr9	110046391	110046535	reg1015485.p1	3.787	+	AY313777 NM_001244724 TSC_hg19_v1_chr9_+_110046392	-97	+	TSC_hg19_v1_chr9_+_110045874 DQ890563 DQ893726 AB527553 CU676798	-554	+	TSC_hg19_v1_chr9_+_110045567 D21090	-861	+	NM_001244713 AK297986 AK316189	628	+	TSC_hg19_v1_chr9_-_110250732 AK095134	204257	-	HM026463 CU688792 CU689020 DQ891793 DQ894975 AB385001 TSC_hg19_v1_chr9_-_110251402 BC030811 BC029923 AK313489	204985	-	AY313777|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##NM_001244724|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##DQ890563|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##DQ893726|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##D21090|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##NM_001244713|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK297986|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK316189|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK095134|KLF4|9314|Kruppel-like factor 4 (gut)##HM026463|KLF4|9314|Kruppel-like factor 4 (gut)##DQ891793|KLF4|9314|Kruppel-like factor 4 (gut)##DQ894975|KLF4|9314|Kruppel-like factor 4 (gut)##BC030811|KLF4|9314|Kruppel-like factor 4 (gut)##BC029923|KLF4|9314|Kruppel-like factor 4 (gut)##AK313489|KLF4|9314|Kruppel-like factor 4 (gut)	0.895982	0.0	denovo_WM_7:-26:0.397	denovo_WM_7:-27:0.444
chr1	28504176	28504325	reg1016911.p2	3.786	+	NM_000952 NM_001164723	-796	-	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-89126	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-217732	+	S52624 AK292053 NM_001164721 NM_001164722	16162	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	55281	-	TSC_hg19_v1_chr1_+_28562634 NM_016311 NM_178190 NM_178191 AK316600 BC009677 AK000934 AB029042 BT009849 CR457097 EU832478 EU832558 BC017562 BC004955	58399	+	NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_016311|ATPIF1|93974|ATPase inhibitory factor 1##NM_178190|ATPIF1|93974|ATPase inhibitory factor 1##NM_178191|ATPIF1|93974|ATPase inhibitory factor 1##AK316600|ATPIF1|93974|ATPase inhibitory factor 1##BC009677|ATPIF1|93974|ATPase inhibitory factor 1##AK000934|ATPIF1|93974|ATPase inhibitory factor 1##AB029042|ATPIF1|93974|ATPase inhibitory factor 1##BT009849|ATPIF1|93974|ATPase inhibitory factor 1##CR457097|ATPIF1|93974|ATPase inhibitory factor 1##EU832478|ATPIF1|93974|ATPase inhibitory factor 1##EU832558|ATPIF1|93974|ATPase inhibitory factor 1##BC017562|ATPIF1|93974|ATPase inhibitory factor 1##BC004955|ATPIF1|93974|ATPase inhibitory factor 1	0.990443	0.0	denovo_WM_7:1:0.725
chr15	59390951	59391121	reg1004351.p2	3.786	+	TSC_hg19_v1_chr15_+_59359061 AK095327	-31958	+	BX647259 TSC_hg19_v1_chr15_+_59280332 AK131304	-110757	+	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	-111179	+	TSC_hg19_v1_chr15_+_59397344 NM_004701 AK001404 AL080146 BC105086 BC105112 AF087910 AK222611 AB020981 AF002822 AB587333 AM393577 BT019458 CR533527	6335	+	AY642121 BC022034 AY009108 NM_033195 AK312777 AK058192	108016	+	AB290177 TSC_hg19_v1_chr15_-_59665055	274018	-	AK095327|RNF111|54778|ring finger protein 111##BX647259|RNF111|54778|ring finger protein 111##AK131304|RNF111|54778|ring finger protein 111##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111##NM_004701|CCNB2|9133|cyclin B2##AK001404|CCNB2|9133|cyclin B2##AL080146|CCNB2|9133|cyclin B2##BC105086|CCNB2|9133|cyclin B2##BC105112|CCNB2|9133|cyclin B2##AF087910|CCNB2|9133|cyclin B2##AK222611|CCNB2|9133|cyclin B2##AB020981|CCNB2|9133|cyclin B2##AF002822|CCNB2|9133|cyclin B2##AM393577|CCNB2|9133|cyclin B2##BT019458|CCNB2|9133|cyclin B2##CR533527|CCNB2|9133|cyclin B2##AY642121|LDHAL6B|92483|lactate dehydrogenase A-like 6B##BC022034|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AY009108|LDHAL6B|92483|lactate dehydrogenase A-like 6B##NM_033195|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AK058192|LDHAL6B|92483|lactate dehydrogenase A-like 6B##AB290177|MYO1E|4643|myosin IE	1.995064	0.0	denovo_WM_7:36:0.359	denovo_WM_7:37:0.269	denovo_WM_7:53:0.289	denovo_WM_7:54:0.378
chr4	71793347	71793496	reg1009773.p2	3.786	+	NM_001244766 NM_001244767 NM_173468 AK093545 AX748194 TSC_hg19_v1_chr4_+_71768085 AK299481 BC038112 AK313513	-25308	+	TSC_hg19_v1_chr4_-_71705615 NM_002092 AK296287	-87784	-	TSC_hg19_v1_chr4_-_71705608 U07231 AK127161 AK090755 AK055499 AK056891 AK095799 AK097055 AK124124 BC040485	-87844	-	TSC_hg19_v1_chr4_+_71859320 NM_000788 AK303292 AK313523 BC103764	65886	+	M60527 TSC_hg19_v1_chr4_+_71859434 BC114617 JF806429 BT019941 BT019942 CR536527 CR541876	66050	+	TSC_hg19_v1_chr4_+_72052481 AF011390 NM_001098484 NM_001134742 AK307594 AF157492	259302	+	NM_001244766|MOB1B|92597|MOB kinase activator 1B##NM_001244767|MOB1B|92597|MOB kinase activator 1B##NM_173468|MOB1B|92597|MOB kinase activator 1B##AK093545|MOB1B|92597|MOB kinase activator 1B##AK299481|MOB1B|92597|MOB kinase activator 1B##BC038112|MOB1B|92597|MOB kinase activator 1B##AK313513|MOB1B|92597|MOB kinase activator 1B##NM_002092|GRSF1|2926|G-rich RNA sequence binding factor 1##AK296287|GRSF1|2926|G-rich RNA sequence binding factor 1##U07231|GRSF1|2926|G-rich RNA sequence binding factor 1##AK127161|GRSF1|2926|G-rich RNA sequence binding factor 1##AK090755|GRSF1|2926|G-rich RNA sequence binding factor 1##AK055499|GRSF1|2926|G-rich RNA sequence binding factor 1##AK056891|GRSF1|2926|G-rich RNA sequence binding factor 1##AK095799|GRSF1|2926|G-rich RNA sequence binding factor 1##AK097055|GRSF1|2926|G-rich RNA sequence binding factor 1##AK124124|GRSF1|2926|G-rich RNA sequence binding factor 1##BC040485|GRSF1|2926|G-rich RNA sequence binding factor 1##NM_000788|DCK|1633|deoxycytidine kinase##AK303292|DCK|1633|deoxycytidine kinase##AK313523|DCK|1633|deoxycytidine kinase##BC103764|DCK|1633|deoxycytidine kinase##M60527|DCK|1633|deoxycytidine kinase##BC114617|DCK|1633|deoxycytidine kinase##JF806429|DCK|1633|deoxycytidine kinase##BT019941|DCK|1633|deoxycytidine kinase##BT019942|DCK|1633|deoxycytidine kinase##CR536527|DCK|1633|deoxycytidine kinase##CR541876|DCK|1633|deoxycytidine kinase##AF011390|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001098484|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##NM_001134742|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AK307594|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4##AF157492|SLC4A4|8671|solute carrier family 4, sodium bicarbonate cotransporter, member 4	0.0	0.0	
chrX	54458939	54459025	reg1018134.p1	3.786	+	TSC_hg19_v1_chrX_-_54384446 AY352048 NM_001002838 NM_020922	-74540	-	TSC_hg19_v1_chrX_-_54209659 BC073166 AK000513 BC136413 BC144081 AY150025 AY121803 BC016138 NM_017848 NM_198456	-249301	-	NM_001184896	-387414	-	TSC_hg19_v1_chrX_+_54466843 BC007699 BC011825 NM_058163 CU680068 U92980	7866	+	AB384834 TSC_hg19_v1_chrX_-_54522017 BC034530	63006	-	TSC_hg19_v1_chrX_-_54522668 AK299635 AK226117 NM_004463 U11690	63614	-	AY352048|WNK3|65267|WNK lysine deficient protein kinase 3##NM_001002838|WNK3|65267|WNK lysine deficient protein kinase 3##NM_020922|WNK3|65267|WNK lysine deficient protein kinase 3##BC073166|FAM120C|54954|family with sequence similarity 120C##AK000513|FAM120C|54954|family with sequence similarity 120C##BC136413|FAM120C|54954|family with sequence similarity 120C##BC144081|FAM120C|54954|family with sequence similarity 120C##AY150025|FAM120C|54954|family with sequence similarity 120C##AY121803|FAM120C|54954|family with sequence similarity 120C##BC016138|FAM120C|54954|family with sequence similarity 120C##NM_017848|FAM120C|54954|family with sequence similarity 120C##NM_198456|FAM120C|54954|family with sequence similarity 120C##NM_001184896|PHF8|23133|PHD finger protein 8##BC007699|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##BC011825|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##NM_058163|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##U92980|TSR2|90121|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)##BC034530|FGD1|2245|FYVE, RhoGEF and PH domain containing 1##AK299635|FGD1|2245|FYVE, RhoGEF and PH domain containing 1##AK226117|FGD1|2245|FYVE, RhoGEF and PH domain containing 1##NM_004463|FGD1|2245|FYVE, RhoGEF and PH domain containing 1##U11690|FGD1|2245|FYVE, RhoGEF and PH domain containing 1	0.810569	0.0	denovo_WM_7:23:0.797
chr11	85904470	85904563	reg1005674.p1	3.785	+	AK300275 NM_001206947	-123606	-	TSC_hg19_v1_chr11_-_85780127 AB210017 NM_001008660 NM_001206946 NM_007166 AK291414	-124392	-	TSC_hg19_v1_chr11_-_85780088 BC064357	-124421	-	TSC_hg19_v1_chr11_+_85955830 NM_003797 NM_152991 AK292120 AF080227	51343	+	AF070418 TSC_hg19_v1_chr11_+_85956058	51533	+	AF099032 U90651 TSC_hg19_v1_chr11_+_85956254	51701	+	AK300275|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206947|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AB210017|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001008660|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_001206946|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_007166|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##AK291414|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##BC064357|PICALM|8301|phosphatidylinositol binding clathrin assembly protein##NM_003797|EED|8726|embryonic ectoderm development##NM_152991|EED|8726|embryonic ectoderm development##AK292120|EED|8726|embryonic ectoderm development##AF080227|EED|8726|embryonic ectoderm development##AF070418|EED|8726|embryonic ectoderm development##AF099032|EED|8726|embryonic ectoderm development##U90651|EED|8726|embryonic ectoderm development	0.844583	0.0	denovo_WM_7:14:0.551	denovo_WM_7:16:0.227
chr1	224379839	224379991	reg1014833.p1	3.785	+	TSC_hg19_v1_chr1_+_224370941 AK308232 AF466375 AY423730 AF002668 CU674476	-8928	+	TSC_hg19_v1_chr1_+_224370925 BC000961 NM_003676	-8993	+	NM_001136115 NM_015176 TSC_hg19_v1_chr1_+_224301812 AK001628 AK307892 BC031576 AK303381 CU689186	-78105	+	TSC_hg19_v1_chr1_-_224517875 BC012105 AK298244 AK297396 AK298826 AK293923 AK297070 BC005897 U78772 U68140 NM_001243146 NM_001243147 NM_002533 NM_206840	137937	-	TSC_hg19_v1_chr1_+_224544588 AL136930 AK289973 AK312064 BC039037	164654	+	TSC_hg19_v1_chr1_+_224544594 AF161512 NM_014184	164677	+	AK308232|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF466375|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AY423730|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##AF002668|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##BC000961|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_003676|DEGS1|8560|delta(4)-desaturase, sphingolipid 1##NM_001136115|FBXO28|23219|F-box protein 28##NM_015176|FBXO28|23219|F-box protein 28##AK001628|FBXO28|23219|F-box protein 28##AK307892|FBXO28|23219|F-box protein 28##BC031576|FBXO28|23219|F-box protein 28##AK303381|FBXO28|23219|F-box protein 28##BC012105|NVL|4931|nuclear VCP-like##AK298244|NVL|4931|nuclear VCP-like##AK297396|NVL|4931|nuclear VCP-like##AK298826|NVL|4931|nuclear VCP-like##AK293923|NVL|4931|nuclear VCP-like##AK297070|NVL|4931|nuclear VCP-like##BC005897|NVL|4931|nuclear VCP-like##U78772|NVL|4931|nuclear VCP-like##U68140|NVL|4931|nuclear VCP-like##NM_001243146|NVL|4931|nuclear VCP-like##NM_001243147|NVL|4931|nuclear VCP-like##NM_002533|NVL|4931|nuclear VCP-like##NM_206840|NVL|4931|nuclear VCP-like##AL136930|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK289973|CNIH4|29097|cornichon homolog 4 (Drosophila)##AK312064|CNIH4|29097|cornichon homolog 4 (Drosophila)##BC039037|CNIH4|29097|cornichon homolog 4 (Drosophila)##AF161512|CNIH4|29097|cornichon homolog 4 (Drosophila)##NM_014184|CNIH4|29097|cornichon homolog 4 (Drosophila)	0.997621	0.0	denovo_WM_7:-13:0.470	denovo_WM_7:-14:0.527
chr17	1119607	1119714	reg1015046.p1	3.785	+	TSC_hg19_v1_chr17_-_1090565 AK126882 AK124547 NM_001159746	-29072	-	AK302682 AB384846 TSC_hg19_v1_chr17_-_1083048 NM_021962 U01147	-36591	-	TSC_hg19_v1_chr17_-_1029059 AK307827	-90586	-	NM_001164405	54197	+	AB090231 NM_172367 BC142615	63304	+	TSC_hg19_v1_chr17_-_1248347 L13388	128696	-	AK126882|ABR|29|active BCR-related gene##AK124547|ABR|29|active BCR-related gene##NM_001159746|ABR|29|active BCR-related gene##AK302682|ABR|29|active BCR-related gene##NM_021962|ABR|29|active BCR-related gene##U01147|ABR|29|active BCR-related gene##AK307827|ABR|29|active BCR-related gene##NM_001164405|BHLHA9|727857|basic helix-loop-helix family, member a9##AB090231|TUSC5|286753|tumor suppressor candidate 5##NM_172367|TUSC5|286753|tumor suppressor candidate 5##BC142615|TUSC5|286753|tumor suppressor candidate 5##L13388|PAFAH1B1|5048|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	0.0	0.0	
chr18	24130277	24130343	reg1012074.p1	3.785	+	AK289870 BC063652 TSC_hg19_v1_chr18_-_24129261 NM_001136205	-1069	-	NM_001142730 TSC_hg19_v1_chr18_-_24128518	-1800	-	TSC_hg19_v1_chr18_+_23806444 NM_005640 AB234096	-323893	+	AF542549 NM_198991	89997	-	U63623 NM_004028	312244	-	AB128929 AB528067 CU692534 BC022286 D63412 AB209156 AK295069 U63622 TSC_hg19_v1_chr18_-_24445707 NM_001650 AK222684 HQ901095	315406	-	AK289870|KCTD1|284252|potassium channel tetramerisation domain containing 1##BC063652|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001136205|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_001142730|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_005640|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AB234096|TAF4B|6875|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa##AF542549|KCTD1|284252|potassium channel tetramerisation domain containing 1##NM_198991|KCTD1|284252|potassium channel tetramerisation domain containing 1##U63623|AQP4|361|aquaporin 4##NM_004028|AQP4|361|aquaporin 4##AB128929|AQP4|361|aquaporin 4##BC022286|AQP4|361|aquaporin 4##D63412|AQP4|361|aquaporin 4##AB209156|AQP4|361|aquaporin 4##AK295069|AQP4|361|aquaporin 4##U63622|AQP4|361|aquaporin 4##NM_001650|AQP4|361|aquaporin 4##AK222684|AQP4|361|aquaporin 4##HQ901095|AQP4|361|aquaporin 4	0.826658	0.0	denovo_WM_7:-5:0.731
chr19	16547166	16547263	reg1013950.p1	3.785	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-111445	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-111573	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-238464	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	35562	-	TSC_hg19_v1_chr19_-_16582810 AK291359	35638	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	59756	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.534069	0.0	denovo_WM_7:-22:0.311
chr2	216143331	216143511	reg1018203.p2	3.785	+	BC144073 AY219711 NM_173076	-140312	-	AY033486 NM_015657	-246612	-	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	-469062	-	NM_004044 TSC_hg19_v1_chr2_+_216176781 AK313066 D82348 AK298142	33317	+	D89976 TSC_hg19_v1_chr2_+_216176813	33391	+	TSC_hg19_v1_chr2_+_216176824 AB062403 BC008879 AB590190 DQ893262 DQ896591 CU679167	33420	+	BC144073|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY219711|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_173076|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##NM_004044|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK313066|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D82348|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AK298142|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##D89976|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##AB062403|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##BC008879|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ893262|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase##DQ896591|ATIC|471|5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	0.641015	0.0	denovo_WM_7:61:0.308	denovo_WM_7:62:0.314
chr5	56795386	56795515	reg1016146.p2	3.785	+	BC137470 BC137473 BX648504 NM_001017992	-16856	-	NM_001127236 AL136844 AB463051 AM392551 AM393442	-285522	+	BC113004 NM_001127235	-324177	+	AB385029 DQ893653 DQ895830 TSC_hg19_v1_chr5_-_57755914 AF223574 BC013879 AK027851 AK297298 AK098163 AK312505 NM_001252226 NM_006622 AF059617	960486	-	TSC_hg19_v1_chr5_+_57787262 AK090960 AX746705 NM_152687	991844	+	TSC_hg19_v1_chr5_+_57878923 AY026936 BC013033 NM_138453	1083469	+	BC137470|ACTBL2|345651|actin, beta-like 2##BC137473|ACTBL2|345651|actin, beta-like 2##BX648504|ACTBL2|345651|actin, beta-like 2##NM_001017992|ACTBL2|345651|actin, beta-like 2##NM_001127236|GPBP1|65056|GC-rich promoter binding protein 1##AL136844|GPBP1|65056|GC-rich promoter binding protein 1##AM392551|GPBP1|65056|GC-rich promoter binding protein 1##AM393442|GPBP1|65056|GC-rich promoter binding protein 1##BC113004|GPBP1|65056|GC-rich promoter binding protein 1##NM_001127235|GPBP1|65056|GC-rich promoter binding protein 1##DQ893653|PLK2|10769|polo-like kinase 2##DQ895830|PLK2|10769|polo-like kinase 2##AF223574|PLK2|10769|polo-like kinase 2##BC013879|PLK2|10769|polo-like kinase 2##AK027851|PLK2|10769|polo-like kinase 2##AK297298|PLK2|10769|polo-like kinase 2##AK098163|PLK2|10769|polo-like kinase 2##AK312505|PLK2|10769|polo-like kinase 2##NM_001252226|PLK2|10769|polo-like kinase 2##NM_006622|PLK2|10769|polo-like kinase 2##AF059617|PLK2|10769|polo-like kinase 2##AK090960|GAPT|202309|GRB2-binding adaptor protein, transmembrane##NM_152687|GAPT|202309|GRB2-binding adaptor protein, transmembrane##AY026936|RAB3C|115827|RAB3C, member RAS oncogene family##BC013033|RAB3C|115827|RAB3C, member RAS oncogene family##NM_138453|RAB3C|115827|RAB3C, member RAS oncogene family	0.560739	0.407629	denovo_WM_7:20:0.368	CTCF.p2:-30:0.408
chr9	131964273	131964361	reg1009989.p1	3.785	+	TSC_hg19_v1_chr9_-_131940541 NM_203434	-23777	-	TSC_hg19_v1_chr9_-_131940534 BC064028	-23810	-	AK310328 TSC_hg19_v1_chr9_+_131902359	-62007	+	AK092588 AX747616 NM_001012715 BC132699 BC132701	118978	+	TSC_hg19_v1_chr9_+_132251360 BC044229 AK024177	287037	+	TSC_hg19_v1_chr9_+_132251404 BC019073 AK092686	287124	+	NM_203434|IER5L|389792|immediate early response 5-like##BC064028|IER5L|389792|immediate early response 5-like##AK310328|PPP2R4|5524|protein phosphatase 2A activator, regulatory subunit 4##AK092588|C9orf106|414318|chromosome 9 open reading frame 106##NM_001012715|C9orf106|414318|chromosome 9 open reading frame 106##BC132699|C9orf106|414318|chromosome 9 open reading frame 106##BC132701|C9orf106|414318|chromosome 9 open reading frame 106##BC044229|LOC100506190|100506190|uncharacterized LOC100506190##AK024177|LOC100506190|100506190|uncharacterized LOC100506190##BC019073|LOC100506190|100506190|uncharacterized LOC100506190##AK092686|LOC100506190|100506190|uncharacterized LOC100506190	0.993921	0.0	denovo_WM_7:31:0.397	denovo_WM_7:34:0.265
chr14	62130094	62130189	reg1016357.p1	3.784	+	TSC_hg19_v1_chr14_+_61788448 AX775933 BC037268 AK290183 NM_006255 M55284	-341614	+	TSC_hg19_v1_chr14_-_61748521 NM_001017970	-381619	-	AK309281 TSC_hg19_v1_chr14_-_61748195	-381947	-	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	32049	+	FJ790247 NM_001243084	34198	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	98978	+	AX775933|PRKCH|5583|protein kinase C, eta##BC037268|PRKCH|5583|protein kinase C, eta##AK290183|PRKCH|5583|protein kinase C, eta##NM_006255|PRKCH|5583|protein kinase C, eta##M55284|PRKCH|5583|protein kinase C, eta##NM_001017970|TMEM30B|161291|transmembrane protein 30B##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa	0.997707	0.0	denovo_WM_7:-18:0.823
chr17	33864052	33864183	reg1008381.p2	3.784	+	NM_001195790	-49360	-	TSC_hg19_v1_chr17_-_33775787 CR749630 AK056514 AL832726 AK122750 NM_144682	-88306	-	AK001122 BC035605 NM_018042	-104587	-	BC140847 BC157877 BC157879 NM_001129820	20990	-	BC031085 AK312635 BC015751 U91521 NM_000286	41488	-	TSC_hg19_v1_chr17_+_33914281 NM_001030006 NM_001282 M34175 AK295667	50173	+	NM_001195790|SLFN12L|100506736|schlafen family member 12-like##CR749630|SLFN13|146857|schlafen family member 13##AK056514|SLFN13|146857|schlafen family member 13##AL832726|SLFN13|146857|schlafen family member 13##AK122750|SLFN13|146857|schlafen family member 13##NM_144682|SLFN13|146857|schlafen family member 13##AK001122|SLFN12|55106|schlafen family member 12##BC035605|SLFN12|55106|schlafen family member 12##NM_018042|SLFN12|55106|schlafen family member 12##BC140847|SLFN14|342618|schlafen family member 14##BC157877|SLFN14|342618|schlafen family member 14##BC157879|SLFN14|342618|schlafen family member 14##NM_001129820|SLFN14|342618|schlafen family member 14##BC031085|PEX12|5193|peroxisomal biogenesis factor 12##AK312635|PEX12|5193|peroxisomal biogenesis factor 12##BC015751|PEX12|5193|peroxisomal biogenesis factor 12##U91521|PEX12|5193|peroxisomal biogenesis factor 12##NM_000286|PEX12|5193|peroxisomal biogenesis factor 12##NM_001030006|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##NM_001282|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##M34175|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK295667|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit	0.880759	0.0	denovo_WM_7:88:0.881
chr3	11683452	11683547	reg1016906.p2	3.784	+	AK307708 TSC_hg19_v1_chr3_-_11623831 NM_001128220	-59666	-	TSC_hg19_v1_chr3_-_11610264 AK308761 NM_001128221	-73169	-	AK314504 TSC_hg19_v1_chr3_+_11314092 BC000091 AF094516	-369403	+	TSC_hg19_v1_chr3_-_11685397 NM_001128219	1897	-	TSC_hg19_v1_chr3_-_11762012 D50911 BC001514 AK130542 BC000763 BC003038 NM_014667	78616	-	EU832515 EU832596 AK295839 TSC_hg19_v1_chr3_-_11888358 AK310993 BC015088 NM_138807 AK092776 AX747723 AK309733 AK303598	204760	-	AK307708|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128220|VGLL4|9686|vestigial like 4 (Drosophila)##AK308761|VGLL4|9686|vestigial like 4 (Drosophila)##NM_001128221|VGLL4|9686|vestigial like 4 (Drosophila)##AK314504|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##BC000091|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##AF094516|ATG7|10533|ATG7 autophagy related 7 homolog (S. cerevisiae)##NM_001128219|VGLL4|9686|vestigial like 4 (Drosophila)##D50911|VGLL4|9686|vestigial like 4 (Drosophila)##BC001514|VGLL4|9686|vestigial like 4 (Drosophila)##AK130542|VGLL4|9686|vestigial like 4 (Drosophila)##BC000763|VGLL4|9686|vestigial like 4 (Drosophila)##BC003038|VGLL4|9686|vestigial like 4 (Drosophila)##NM_014667|VGLL4|9686|vestigial like 4 (Drosophila)##EU832515|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##EU832596|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK295839|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK310993|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##BC015088|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##NM_138807|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK092776|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK309733|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)##AK303598|TAMM41|132001|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)	0.995501	0.0	denovo_WM_7:3:0.765
chr5	115181567	115181658	reg1010126.p2	3.784	+	TSC_hg19_v1_chr5_+_115177642 NM_001284 BX647735 U91932 BC000804 D63643 BC012614 X99458 DQ891198 DQ894381 AK311843 BT009833 CR450341	-3937	+	BC011033 TSC_hg19_v1_chr5_-_115177263 AB017507 AB590693 EU554057 BC012266 AK313320 NM_004707	-4208	-	D85777 Z31357 BC024241 AK130357 AK314231 TSC_hg19_v1_chr5_-_115152355 AK309390 NM_001801	-29249	-	AK291655 BC068560 NM_173800 BC060869 AY560010 BC109022 BC109023	116599	+	NM_001195581	205550	+	TSC_hg19_v1_chr5_+_115420731 AK002147 AF161423 AF078857 BC005179 NM_016144 AY542165 CU675029	239109	+	NM_001284|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BX647735|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##U91932|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC000804|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##D63643|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC012614|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##X99458|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ891198|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##DQ894381|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##AK311843|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BT009833|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##CR450341|AP3S1|1176|adaptor-related protein complex 3, sigma 1 subunit##BC011033|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AB017507|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##EU554057|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##BC012266|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##AK313320|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##NM_004707|ATG12|9140|ATG12 autophagy related 12 homolog (S. cerevisiae)##D85777|CDO1|1036|cysteine dioxygenase, type I##Z31357|CDO1|1036|cysteine dioxygenase, type I##BC024241|CDO1|1036|cysteine dioxygenase, type I##AK130357|CDO1|1036|cysteine dioxygenase, type I##AK314231|CDO1|1036|cysteine dioxygenase, type I##NM_001801|CDO1|1036|cysteine dioxygenase, type I##AK291655|AQPEP|206338|laeverin##BC068560|AQPEP|206338|laeverin##NM_173800|AQPEP|206338|laeverin##BC060869|AQPEP|206338|laeverin##AY560010|AQPEP|206338|laeverin##BC109022|AQPEP|206338|laeverin##BC109023|AQPEP|206338|laeverin##NM_001195581|LOC644100|644100|uncharacterized LOC644100##AK002147|COMMD10|51397|COMM domain containing 10##AF161423|COMMD10|51397|COMM domain containing 10##AF078857|COMMD10|51397|COMM domain containing 10##BC005179|COMMD10|51397|COMM domain containing 10##NM_016144|COMMD10|51397|COMM domain containing 10##AY542165|COMMD10|51397|COMM domain containing 10	1.993901	0.0	
chr5	154242021	154242123	reg1012536.p1	3.784	+	TSC_hg19_v1_chr5_+_154238213 AK297381 BC017366	-3830	+	TSC_hg19_v1_chr5_+_154238202 AL122045 NM_004779 AF053318 AK303775	-3869	+	AK316221 AK314317 TSC_hg19_v1_chr5_+_154238186 AK316055 BC093025 AK025358 AK299589 AK309359 AK315864	-3941	+	TSC_hg19_v1_chr5_-_154317760 AB385260 AY063750 AK022748 BC113614 BC143724 BC036894 BC040931 AK074066 AK315101 NM_001252156 NM_015465	75644	-	TSC_hg19_v1_chr5_+_154320654 NM_001014990 NM_014180 AK000601 AK302784 CR933679 BC012565 AF161507 CU680362	78577	+	NM_001099293 AK302388	151214	+	AK297381|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##BC017366|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AL122045|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##NM_004779|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AF053318|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK303775|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK316221|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK314317|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK316055|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##BC093025|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK025358|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK299589|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK309359|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AK315864|CNOT8|9337|CCR4-NOT transcription complex, subunit 8##AY063750|GEMIN5|25929|gem (nuclear organelle) associated protein 5##AK022748|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC113614|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC143724|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC036894|GEMIN5|25929|gem (nuclear organelle) associated protein 5##BC040931|GEMIN5|25929|gem (nuclear organelle) associated protein 5##AK074066|GEMIN5|25929|gem (nuclear organelle) associated protein 5##AK315101|GEMIN5|25929|gem (nuclear organelle) associated protein 5##NM_001252156|GEMIN5|25929|gem (nuclear organelle) associated protein 5##NM_015465|GEMIN5|25929|gem (nuclear organelle) associated protein 5##NM_001014990|MRPL22|29093|mitochondrial ribosomal protein L22##NM_014180|MRPL22|29093|mitochondrial ribosomal protein L22##AK000601|MRPL22|29093|mitochondrial ribosomal protein L22##AK302784|MRPL22|29093|mitochondrial ribosomal protein L22##CR933679|MRPL22|29093|mitochondrial ribosomal protein L22##BC012565|MRPL22|29093|mitochondrial ribosomal protein L22##AF161507|MRPL22|29093|mitochondrial ribosomal protein L22##NM_001099293|KIF4B|285643|kinesin family member 4B##AK302388|KIF4B|285643|kinesin family member 4B	0.960431	0.0	denovo_WM_7:-32:0.861
chr7	5468337	5468458	reg1013121.p2	3.784	+	NM_001080495	-5221	-	AY129022 TSC_hg19_v1_chr7_-_5461555	-6856	-	TSC_hg19_v1_chr7_-_5460842 BC140723	-7491	-	CU692902 TSC_hg19_v1_chr7_-_5553380 AK057042 BC006426 BC024256 NM_024963	84954	-	TSC_hg19_v1_chr7_-_5553435 AK130444 AK294949	85030	-	M28424 V00478 TSC_hg19_v1_chr7_-_5567980 HQ154074 DQ407611 EF036500	99615	-	NM_001080495|TNRC18|84629|trinucleotide repeat containing 18##AY129022|TNRC18|84629|trinucleotide repeat containing 18##AK057042|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC006426|FBXL18|80028|F-box and leucine-rich repeat protein 18##BC024256|FBXL18|80028|F-box and leucine-rich repeat protein 18##NM_024963|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK130444|FBXL18|80028|F-box and leucine-rich repeat protein 18##AK294949|FBXL18|80028|F-box and leucine-rich repeat protein 18##M28424|ACTB|60|actin, beta##V00478|ACTB|60|actin, beta##DQ407611|ACTB|60|actin, beta##EF036500|ACTB|60|actin, beta	1.077294	0.011931	
chr9	134505929	134506030	reg1015953.p2	3.784	+	AK057848 TSC_hg19_v1_chr9_-_134406625 BC091495 BC015547 AK022317 NM_001135954 NM_031432	-99329	-	TSC_hg19_v1_chr9_-_134406578 AF254133 CR457281 CU677347 AF237290 AF125106 AK295471 AK307475	-99432	-	AK315218 TSC_hg19_v1_chr9_+_134378402 AK293529 BC022877	-127544	+	BC041710 NM_198679 TSC_hg19_v1_chr9_-_134585264	79223	-	D21239 NM_005312	106945	-	AB385202 EU832841 GQ129245 CR749354 TSC_hg19_v1_chr9_-_134615363	109311	-	AK057848|UCK1|83549|uridine-cytidine kinase 1##BC091495|UCK1|83549|uridine-cytidine kinase 1##BC015547|UCK1|83549|uridine-cytidine kinase 1##AK022317|UCK1|83549|uridine-cytidine kinase 1##NM_001135954|UCK1|83549|uridine-cytidine kinase 1##NM_031432|UCK1|83549|uridine-cytidine kinase 1##AF254133|UCK1|83549|uridine-cytidine kinase 1##CR457281|UCK1|83549|uridine-cytidine kinase 1##AF237290|UCK1|83549|uridine-cytidine kinase 1##AF125106|UCK1|83549|uridine-cytidine kinase 1##AK295471|UCK1|83549|uridine-cytidine kinase 1##AK307475|UCK1|83549|uridine-cytidine kinase 1##AK315218|POMT1|10585|protein-O-mannosyltransferase 1##AK293529|POMT1|10585|protein-O-mannosyltransferase 1##BC022877|POMT1|10585|protein-O-mannosyltransferase 1##BC041710|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_198679|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##D21239|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##NM_005312|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##EU832841|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##GQ129245|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1##CR749354|RAPGEF1|2889|Rap guanine nucleotide exchange factor (GEF) 1	0.0	0.0	
chr1	151411517	151411622	reg1008818.p2	3.783	+	TSC_hg19_v1_chr1_+_151372038 AK313825 AK294149 D26600 NM_002796 BC008314 BC010088 BC010098 BC011768 BC012168 BC017451 BC017486 BC000331 AB464086 BT006917 CR456820 CU675936 CU678915 CU679615 CU680252 DQ890748 DQ892020 DQ895212 S71381	-39529	+	AK310044 BC009084 NM_003944 TSC_hg19_v1_chr1_-_151345182 AK303815 AK296661 AK309264 AK315643 AK023875 AK298355 BC032997	-66400	-	TSC_hg19_v1_chr1_-_151319726 AK312289 AK302891 NM_000449 NM_001025603 AK311525	-91826	-	TSC_hg19_v1_chr1_-_151414644 AB007930 AB463182 NM_207171 CU691222	3092	-	TSC_hg19_v1_chr1_-_151431656 BX649163 AB037911 AB075477 AK000199 AK300307 BC057773 BX537561 AK299791 AK302501	20107	-	TSC_hg19_v1_chr1_-_151431954 AJ242979 BX537838 NM_001194937 NM_001194938 NM_015100 NM_145796	20362	-	AK313825|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK294149|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##D26600|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##NM_002796|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC008314|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010088|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010098|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC011768|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC012168|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017451|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017486|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC000331|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BT006917|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##CR456820|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ890748|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ892020|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ895212|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##S71381|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK310044|SELENBP1|8991|selenium binding protein 1##BC009084|SELENBP1|8991|selenium binding protein 1##NM_003944|SELENBP1|8991|selenium binding protein 1##AK303815|SELENBP1|8991|selenium binding protein 1##AK296661|SELENBP1|8991|selenium binding protein 1##AK309264|SELENBP1|8991|selenium binding protein 1##AK315643|SELENBP1|8991|selenium binding protein 1##AK023875|SELENBP1|8991|selenium binding protein 1##AK298355|SELENBP1|8991|selenium binding protein 1##BC032997|SELENBP1|8991|selenium binding protein 1##AK312289|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK302891|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_000449|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_001025603|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK311525|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AB007930|POGZ|23126|pogo transposable element with ZNF domain##NM_207171|POGZ|23126|pogo transposable element with ZNF domain##BX649163|POGZ|23126|pogo transposable element with ZNF domain##AB037911|POGZ|23126|pogo transposable element with ZNF domain##AB075477|POGZ|23126|pogo transposable element with ZNF domain##AK000199|POGZ|23126|pogo transposable element with ZNF domain##AK300307|POGZ|23126|pogo transposable element with ZNF domain##BC057773|POGZ|23126|pogo transposable element with ZNF domain##BX537561|POGZ|23126|pogo transposable element with ZNF domain##AK299791|POGZ|23126|pogo transposable element with ZNF domain##AK302501|POGZ|23126|pogo transposable element with ZNF domain##AJ242979|POGZ|23126|pogo transposable element with ZNF domain##BX537838|POGZ|23126|pogo transposable element with ZNF domain##NM_001194937|POGZ|23126|pogo transposable element with ZNF domain##NM_001194938|POGZ|23126|pogo transposable element with ZNF domain##NM_015100|POGZ|23126|pogo transposable element with ZNF domain##NM_145796|POGZ|23126|pogo transposable element with ZNF domain	0.986551	0.0	denovo_WM_7:6:0.221	denovo_WM_7:7:0.766
chr12	50911488	50911559	reg1012686.p1	3.783	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-12624	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-12768	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-41936	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	246355	+	TSC_hg19_v1_chr12_+_51158275 AK299240	246735	+	NM_182559 BC035123 BC048112 CU690554	325200	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	0.0	0.0	
chr16	30814365	30814461	reg1012801.p1	3.783	+	TSC_hg19_v1_chr16_-_30798510 AB002324 NM_001080417	-16016	-	TSC_hg19_v1_chr16_-_30787317 AK057076	-27082	-	TSC_hg19_v1_chr16_+_30773642 AK297531 AK304521 AK027406 AK293710 BX640763 CR627431 AK291666 AK131310 AK294258 AF122819 AB014561 BC006133 BC011769 BC018647	-40771	+	BC010017 AJ223980 CU691314 TSC_hg19_v1_chr16_-_30905327	90888	-	TSC_hg19_v1_chr16_-_30905377 BC019071 NM_004765	90982	-	TSC_hg19_v1_chr16_-_30905474 BC058863	91123	-	AB002324|ZNF629|23361|zinc finger protein 629##NM_001080417|ZNF629|23361|zinc finger protein 629##AK297531|RNF40|9810|ring finger protein 40##AK304521|RNF40|9810|ring finger protein 40##AK027406|RNF40|9810|ring finger protein 40##AK293710|RNF40|9810|ring finger protein 40##BX640763|RNF40|9810|ring finger protein 40##CR627431|RNF40|9810|ring finger protein 40##AK291666|RNF40|9810|ring finger protein 40##AK131310|RNF40|9810|ring finger protein 40##AK294258|RNF40|9810|ring finger protein 40##AF122819|RNF40|9810|ring finger protein 40##AB014561|RNF40|9810|ring finger protein 40##BC006133|RNF40|9810|ring finger protein 40##BC011769|RNF40|9810|ring finger protein 40##BC018647|RNF40|9810|ring finger protein 40##AJ223980|BCL7C|9274|B-cell CLL/lymphoma 7C##BC019071|BCL7C|9274|B-cell CLL/lymphoma 7C##NM_004765|BCL7C|9274|B-cell CLL/lymphoma 7C##BC058863|BCL7C|9274|B-cell CLL/lymphoma 7C	0.994056	0.0	denovo_WM_7:10:0.505	denovo_WM_7:11:0.433
chr16	30996356	30996482	reg1017778.p1	3.783	+	TSC_hg19_v1_chr16_+_30969464 BC108673	-26882	+	AB002337 NM_014712	-27805	+	TSC_hg19_v1_chr16_+_30960437 AK298276 BC006126 BC016150 BC022786	-35972	+	TSC_hg19_v1_chr16_+_30996538 NM_001142777 NM_001142778 NM_025193 AK057436 BC004929 AK290950 AK292068	110	+	AB527655 AY995211 BC062298 AY028792 NM_052874 TSC_hg19_v1_chr16_-_31021950	25430	-	TSC_hg19_v1_chr16_+_31044415 AK091833 AX747209	47997	+	AB002337|SETD1A|9739|SET domain containing 1A##NM_014712|SETD1A|9739|SET domain containing 1A##AK298276|ORAI3|93129|ORAI calcium release-activated calcium modulator 3##BC006126|ORAI3|93129|ORAI calcium release-activated calcium modulator 3##BC016150|ORAI3|93129|ORAI calcium release-activated calcium modulator 3##BC022786|ORAI3|93129|ORAI calcium release-activated calcium modulator 3##NM_001142777|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_001142778|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##NM_025193|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK057436|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##BC004929|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK290950|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AK292068|HSD3B7|80270|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7##AY995211|STX1B|112755|syntaxin 1B##BC062298|STX1B|112755|syntaxin 1B##AY028792|STX1B|112755|syntaxin 1B##NM_052874|STX1B|112755|syntaxin 1B##AK091833|STX4|6810|syntaxin 4	0.0	0.915659	CTCF.p2:22:0.916
chr2	24171734	24171837	reg1012629.p2	3.783	+	TSC_hg19_v1_chr2_+_24163332 BC092484 AL832079 NM_181713 BC111997 BC093681 BC143298	-8414	+	TSC_hg19_v1_chr2_+_24150144 BC037901	-21628	+	TSC_hg19_v1_chr2_-_24149946 BC171846 BC037408 NM_001242338 NM_017552 AK094821	-21839	-	NM_001080473	61167	+	AK025598 TSC_hg19_v1_chr2_-_24270262 BC035698 NM_001142319 NM_025203	98473	-	NM_004116 NM_054033 BC050998 TSC_hg19_v1_chr2_+_24272612	100814	+	BC092484|UBXN2A|165324|UBX domain protein 2A##AL832079|UBXN2A|165324|UBX domain protein 2A##NM_181713|UBXN2A|165324|UBX domain protein 2A##BC111997|UBXN2A|165324|UBX domain protein 2A##BC093681|UBXN2A|165324|UBX domain protein 2A##BC143298|UBXN2A|165324|UBX domain protein 2A##BC037901|UBXN2A|165324|UBX domain protein 2A##BC171846|ATAD2B|54454|ATPase family, AAA domain containing 2B##BC037408|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001242338|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_017552|ATAD2B|54454|ATPase family, AAA domain containing 2B##AK094821|ATAD2B|54454|ATPase family, AAA domain containing 2B##NM_001080473|MFSD2B|388931|major facilitator superfamily domain containing 2B##AK025598|C2orf44|80304|chromosome 2 open reading frame 44##BC035698|C2orf44|80304|chromosome 2 open reading frame 44##NM_001142319|C2orf44|80304|chromosome 2 open reading frame 44##NM_025203|C2orf44|80304|chromosome 2 open reading frame 44##NM_004116|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##NM_054033|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa##BC050998|FKBP1B|2281|FK506 binding protein 1B, 12.6 kDa	0.99897	0.0	denovo_WM_7:38:0.314	denovo_WM_7:39:0.314	denovo_WM_7:40:0.314
chr4	39764466	39764620	reg1014256.p1	3.783	+	NM_001111112 NM_001111113 NM_005339 TSC_hg19_v1_chr4_+_39699755 AK295846 AK315524 AK093533 AK291454 AK307130 BC022804 BC050600 AB022435 AB022436 U58522 AB527742 CU690732 EU446896	-64739	+	TSC_hg19_v1_chr4_-_39640486 AK023351 BC008502 NM_174921 AK307146	-123987	-	TSC_hg19_v1_chr4_+_39529635 AK056558	-234917	+	AK098331 TSC_hg19_v1_chr4_-_39979511 BC114218	214795	-	TSC_hg19_v1_chr4_-_39979555 BC041361 NM_001100399 NM_001100400 AB621803	215050	-	TSC_hg19_v1_chr4_+_40058519 AK001542 NM_018177 AB371584	293989	+	NM_001111112|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_001111113|UBE2K|3093|ubiquitin-conjugating enzyme E2K##NM_005339|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK295846|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK315524|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK093533|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK291454|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK307130|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC022804|UBE2K|3093|ubiquitin-conjugating enzyme E2K##BC050600|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022435|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AB022436|UBE2K|3093|ubiquitin-conjugating enzyme E2K##U58522|UBE2K|3093|ubiquitin-conjugating enzyme E2K##EU446896|UBE2K|3093|ubiquitin-conjugating enzyme E2K##AK023351|C4orf34|201895|chromosome 4 open reading frame 34##BC008502|C4orf34|201895|chromosome 4 open reading frame 34##NM_174921|C4orf34|201895|chromosome 4 open reading frame 34##AK307146|C4orf34|201895|chromosome 4 open reading frame 34##AK098331|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC114218|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##BC041361|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100399|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##NM_001100400|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AB621803|PDS5A|23244|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)##AK001542|N4BP2|55728|NEDD4 binding protein 2##NM_018177|N4BP2|55728|NEDD4 binding protein 2##AB371584|N4BP2|55728|NEDD4 binding protein 2	0.999915	0.0	
chr8	118524764	118524853	reg1013392.p1	3.783	+	NM_001172814 NM_173851	-377472	+	AK298294 NM_001172813 NM_001172815 AL713790	-561605	+	EF560713 NM_001172811	-562297	+	TSC_hg19_v1_chr8_+_118532964 NM_080651	8150	+	TSC_hg19_v1_chr8_+_118532970 BC008226 FM179284 AB463866 DQ891518 DQ894708 AY083305	8234	+	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	599153	-	NM_001172814|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_173851|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AK298294|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172813|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172815|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##AL713790|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##EF560713|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_001172811|SLC30A8|169026|solute carrier family 30 (zinc transporter), member 8##NM_080651|MED30|90390|mediator complex subunit 30##BC008226|MED30|90390|mediator complex subunit 30##FM179284|MED30|90390|mediator complex subunit 30##DQ891518|MED30|90390|mediator complex subunit 30##DQ894708|MED30|90390|mediator complex subunit 30##AY083305|MED30|90390|mediator complex subunit 30##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1	0.998979	0.0	
chr9	132795934	132796114	reg1012485.p1	3.783	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-198259	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-198302	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-198340	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	9330	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	9464	-	BC039728 NM_001136557 NM_001136558 NM_020960	19960	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.0	0.0	
chr12	32465142	32465236	reg1012890.p2	3.782	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	-205016	+	TSC_hg19_v1_chr12_+_32259750 BC010091	-205475	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	-352795	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	189850	+	TSC_hg19_v1_chr12_+_32687260 AK303334	222074	+	TSC_hg19_v1_chr12_+_32832187 AK302565 NM_005690 NM_012062 NM_012063 AK311606	366968	+	AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK303334|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK302565|DNM1L|10059|dynamin 1-like##NM_005690|DNM1L|10059|dynamin 1-like##NM_012062|DNM1L|10059|dynamin 1-like##NM_012063|DNM1L|10059|dynamin 1-like##AK311606|DNM1L|10059|dynamin 1-like	0.727382	0.996784	CTCF.p2:0:0.997	denovo_WM_7:-43:0.520
chr14	50091247	50091391	reg1015980.p2	3.782	+	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	-3612	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	-3975	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	-25859	+	BC013322 TSC_hg19_v1_chr14_-_50100693 BX248264 BC011400 AK001425	9377	-	FJ158843 TSC_hg19_v1_chr14_-_50101912	10573	-	TSC_hg19_v1_chr14_-_50101963 BX248765 NM_001083908 NM_018139	10635	-	NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC013322|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248264|DNAAF2|55172|dynein, axonemal, assembly factor 2##BC011400|DNAAF2|55172|dynein, axonemal, assembly factor 2##AK001425|DNAAF2|55172|dynein, axonemal, assembly factor 2##FJ158843|DNAAF2|55172|dynein, axonemal, assembly factor 2##BX248765|DNAAF2|55172|dynein, axonemal, assembly factor 2##NM_001083908|DNAAF2|55172|dynein, axonemal, assembly factor 2##NM_018139|DNAAF2|55172|dynein, axonemal, assembly factor 2	0.989763	0.0	denovo_WM_7:85:0.990
chr19	56150455	56150585	reg1017810.p1	3.782	+	TSC_hg19_v1_chr19_+_56146387 AK055093	-4128	+	TSC_hg19_v1_chr19_-_56135944 BC065822 NM_203374	-14558	-	AK074859 AK309967 TSC_hg19_v1_chr19_-_56135933	-14588	-	TSC_hg19_v1_chr19_+_56152397 AL359054 NM_207115 AK314888	1877	+	NM_016202 NM_001163423	2919	+	TSC_hg19_v1_chr19_+_56155014 AF151023 AK026203 NM_016535 BC010097 AK315603 BC001219 BC071845	4482	+	BC065822|ZNF784|147808|zinc finger protein 784##NM_203374|ZNF784|147808|zinc finger protein 784##AK074859|ZNF784|147808|zinc finger protein 784##AL359054|ZNF580|51157|zinc finger protein 580##NM_207115|ZNF580|51157|zinc finger protein 580##AK314888|ZNF580|51157|zinc finger protein 580##NM_016202|ZNF580|51157|zinc finger protein 580##NM_001163423|ZNF580|51157|zinc finger protein 580##AF151023|ZNF581|51545|zinc finger protein 581##AK026203|ZNF581|51545|zinc finger protein 581##NM_016535|ZNF581|51545|zinc finger protein 581##BC010097|ZNF581|51545|zinc finger protein 581##AK315603|ZNF581|51545|zinc finger protein 581##BC001219|ZNF581|51545|zinc finger protein 581##BC071845|ZNF581|51545|zinc finger protein 581	0.0	1.140214	CTCF.p2:67:0.992
chr2	224749487	224749621	reg1016291.p2	3.782	+	TSC_hg19_v1_chr2_-_224702300 BC009606 NM_001039569	-47244	-	AF393369 BC021898 TSC_hg19_v1_chr2_-_224702284 AK025338 AK299026	-47305	-	TSC_hg19_v1_chr2_-_224467145 NM_003469	-282375	-	TSC_hg19_v1_chr2_-_224810010 AF411977 AB527455 CU691898	60439	-	BC040525 AB037856 TSC_hg19_v1_chr2_-_224810016	60461	-	TSC_hg19_v1_chr2_-_224810020 AK023415 AK022888	60470	-	BC009606|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_001039569|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AF393369|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##BC021898|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK025338|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##AK299026|AP1S3|130340|adaptor-related protein complex 1, sigma 3 subunit##NM_003469|SCG2|7857|secretogranin II##AF411977|WDFY1|57590|WD repeat and FYVE domain containing 1##BC040525|WDFY1|57590|WD repeat and FYVE domain containing 1##AB037856|WDFY1|57590|WD repeat and FYVE domain containing 1##AK023415|WDFY1|57590|WD repeat and FYVE domain containing 1##AK022888|WDFY1|57590|WD repeat and FYVE domain containing 1	0.996733	0.0	denovo_WM_7:30:0.449	denovo_WM_7:31:0.449
chr5	71078848	71078989	reg1009766.p2	3.782	+	NM_004291 BC029882 U16826 CR542216 CU688778 EU831800 EU831877	-63864	+	TSC_hg19_v1_chr5_+_70944968 AK025591	-133931	+	AF261884 TSC_hg19_v1_chr5_+_70883182 BC065027 CU688004	-195703	+	TSC_hg19_v1_chr5_+_71403301 BC017240 NM_005909 BC025240 BC139918 BC150196 BC046114 AK096273 AK308147 BX647077 BC039822 BC108733 BC032516 BC073993 BC056145 BC063669 BC094834 AB463119	324361	+	TSC_hg19_v1_chr5_+_71502701 AK125194	423845	+	CU687962 D87453 TSC_hg19_v1_chr5_-_71616067 BC064902 BC011818 AK299412 AK025417 AK309065	537140	-	NM_004291|CARTPT|9607|CART prepropeptide##BC029882|CARTPT|9607|CART prepropeptide##U16826|CARTPT|9607|CART prepropeptide##CR542216|CARTPT|9607|CART prepropeptide##EU831800|CARTPT|9607|CART prepropeptide##EU831877|CARTPT|9607|CART prepropeptide##AK025591|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)##AF261884|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)##BC065027|MCCC2|64087|methylcrotonoyl-CoA carboxylase 2 (beta)##BC017240|MAP1B|4131|microtubule-associated protein 1B##NM_005909|MAP1B|4131|microtubule-associated protein 1B##BC025240|MAP1B|4131|microtubule-associated protein 1B##BC139918|MAP1B|4131|microtubule-associated protein 1B##BC150196|MAP1B|4131|microtubule-associated protein 1B##BC046114|MAP1B|4131|microtubule-associated protein 1B##AK096273|MAP1B|4131|microtubule-associated protein 1B##AK308147|MAP1B|4131|microtubule-associated protein 1B##BX647077|MAP1B|4131|microtubule-associated protein 1B##BC039822|MAP1B|4131|microtubule-associated protein 1B##BC108733|MAP1B|4131|microtubule-associated protein 1B##BC032516|MAP1B|4131|microtubule-associated protein 1B##BC073993|MAP1B|4131|microtubule-associated protein 1B##BC056145|MAP1B|4131|microtubule-associated protein 1B##BC063669|MAP1B|4131|microtubule-associated protein 1B##BC094834|MAP1B|4131|microtubule-associated protein 1B##AK125194|MAP1B|4131|microtubule-associated protein 1B##D87453|MRPS27|23107|mitochondrial ribosomal protein S27##BC064902|MRPS27|23107|mitochondrial ribosomal protein S27##BC011818|MRPS27|23107|mitochondrial ribosomal protein S27##AK299412|MRPS27|23107|mitochondrial ribosomal protein S27##AK025417|MRPS27|23107|mitochondrial ribosomal protein S27##AK309065|MRPS27|23107|mitochondrial ribosomal protein S27	0.0	0.969217	CTCF.p2:9:0.969
chr5	96209638	96209704	reg1013390.p2	3.782	+	AK310535 BC030775 NM_001198541	-59846	-	TSC_hg19_v1_chr5_-_96143701 NM_001040458 NM_016442	-65881	-	TSC_hg19_v1_chr5_-_96143614 AF106037 AF183569 AF222340 AY358590 AK291636 AY028806 AY028807	-66049	-	NM_001130140 NM_022350 AK074281	1995	+	TSC_hg19_v1_chr5_+_96212203 AK312864 AB109031 AB163917 BC065240	2517	+	TSC_hg19_v1_chr5_+_96271097 AK096804	61422	+	AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001040458|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_016442|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF106037|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF183569|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF222340|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY358590|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK291636|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028806|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028807|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001130140|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##NM_022350|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK074281|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK312864|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB109031|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AB163917|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##BC065240|ERAP2|64167|endoplasmic reticulum aminopeptidase 2##AK096804|LNPEP|4012|leucyl/cystinyl aminopeptidase	0.125113	0.0	
chrX	12994198	12994325	reg1015989.p1	3.782	+	BC107789 NM_021109 M17733 AK055976 AK057827 AK311747 BC016732 BC022857 BC062436 BC070248 BC070249 BC083509 BC092437 BC104666 BC061586 BC151215 BC139925 BC101790 BC101792 BC001631 BC064954 BC128103 BC141975 BC141976 BC128102	-1021	+	AK314240 NM_138636 AF246971 AY358296 BC101074 BC101075 BC101076 BC101077 AF245703	-69504	+	AK313858 BC033651 NM_016562 AF240467 AF245702	-109063	+	TSC_hg19_v1_chrX_+_12994293 BC104464 BC104465 BT007090 X02493	82	+	BX647580 AK313776 AF494345 BX648111 BX648919 NM_174901	68557	-	AB050195 TSC_hg19_v1_chrX_-_13338140 BC137186 BC137187	343877	-	BC107789|TMSB4X|7114|thymosin beta 4, X-linked##NM_021109|TMSB4X|7114|thymosin beta 4, X-linked##M17733|TMSB4X|7114|thymosin beta 4, X-linked##AK055976|TMSB4X|7114|thymosin beta 4, X-linked##AK057827|TMSB4X|7114|thymosin beta 4, X-linked##AK311747|TMSB4X|7114|thymosin beta 4, X-linked##BC016732|TMSB4X|7114|thymosin beta 4, X-linked##BC022857|TMSB4X|7114|thymosin beta 4, X-linked##BC062436|TMSB4X|7114|thymosin beta 4, X-linked##BC070248|TMSB4X|7114|thymosin beta 4, X-linked##BC070249|TMSB4X|7114|thymosin beta 4, X-linked##BC083509|TMSB4X|7114|thymosin beta 4, X-linked##BC092437|TMSB4X|7114|thymosin beta 4, X-linked##BC104666|TMSB4X|7114|thymosin beta 4, X-linked##BC061586|TMSB4X|7114|thymosin beta 4, X-linked##BC151215|TMSB4X|7114|thymosin beta 4, X-linked##BC139925|TMSB4X|7114|thymosin beta 4, X-linked##BC101790|TMSB4X|7114|thymosin beta 4, X-linked##BC101792|TMSB4X|7114|thymosin beta 4, X-linked##BC001631|TMSB4X|7114|thymosin beta 4, X-linked##BC064954|TMSB4X|7114|thymosin beta 4, X-linked##BC128103|TMSB4X|7114|thymosin beta 4, X-linked##BC141975|TMSB4X|7114|thymosin beta 4, X-linked##BC141976|TMSB4X|7114|thymosin beta 4, X-linked##BC128102|TMSB4X|7114|thymosin beta 4, X-linked##AK314240|TLR8|51311|toll-like receptor 8##NM_138636|TLR8|51311|toll-like receptor 8##AF246971|TLR8|51311|toll-like receptor 8##AY358296|TLR8|51311|toll-like receptor 8##BC101074|TLR8|51311|toll-like receptor 8##BC101075|TLR8|51311|toll-like receptor 8##BC101076|TLR8|51311|toll-like receptor 8##BC101077|TLR8|51311|toll-like receptor 8##AF245703|TLR8|51311|toll-like receptor 8##AK313858|TLR7|51284|toll-like receptor 7##BC033651|TLR7|51284|toll-like receptor 7##NM_016562|TLR7|51284|toll-like receptor 7##AF240467|TLR7|51284|toll-like receptor 7##AF245702|TLR7|51284|toll-like receptor 7##BC104464|TMSB4X|7114|thymosin beta 4, X-linked##BC104465|TMSB4X|7114|thymosin beta 4, X-linked##BT007090|TMSB4X|7114|thymosin beta 4, X-linked##X02493|TMSB4X|7114|thymosin beta 4, X-linked##BX647580|FAM9C|171484|family with sequence similarity 9, member C##AK313776|FAM9C|171484|family with sequence similarity 9, member C##AF494345|FAM9C|171484|family with sequence similarity 9, member C##BX648111|FAM9C|171484|family with sequence similarity 9, member C##BX648919|FAM9C|171484|family with sequence similarity 9, member C##NM_174901|FAM9C|171484|family with sequence similarity 9, member C##AB050195|ATXN3L|92552|ataxin 3-like##BC137186|ATXN3L|92552|ataxin 3-like##BC137187|ATXN3L|92552|ataxin 3-like	0.0	0.0	
chr12	132320935	132321044	reg1016327.p1	3.781	+	TSC_hg19_v1_chr12_+_132312945 BC045610 AB021225 NM_016155 BC040507	-8023	+	TSC_hg19_v1_chr12_+_132195639 BC024041 AK295149 AK310836 BC008707 BC015953 NM_004592 AB208921 U08377 BC113420 BC136678 BC144364	-125333	+	TSC_hg19_v1_chr12_+_132195623 BC142980	-125376	+	TSC_hg19_v1_chr12_+_132379266 AF045458 NM_003565	58284	+	TSC_hg19_v1_chr12_+_132413775 NM_001002020 AK292242	92770	+	TSC_hg19_v1_chr12_+_132413820 NM_001002019 AK074659 NM_025215 BC035964 AF318369 BC002901	92816	+	BC045610|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##AB021225|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##NM_016155|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC040507|MMP17|4326|matrix metallopeptidase 17 (membrane-inserted)##BC024041|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC008707|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC015953|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##NM_004592|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AB208921|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##U08377|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC113420|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC136678|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC144364|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##BC142980|SFSWAP|6433|splicing factor, suppressor of white-apricot homolog (Drosophila)##AF045458|ULK1|8408|unc-51-like kinase 1 (C. elegans)##NM_003565|ULK1|8408|unc-51-like kinase 1 (C. elegans)##NM_001002020|PUS1|80324|pseudouridylate synthase 1##AK292242|PUS1|80324|pseudouridylate synthase 1##NM_001002019|PUS1|80324|pseudouridylate synthase 1##AK074659|PUS1|80324|pseudouridylate synthase 1##NM_025215|PUS1|80324|pseudouridylate synthase 1##BC035964|PUS1|80324|pseudouridylate synthase 1##AF318369|PUS1|80324|pseudouridylate synthase 1##BC002901|PUS1|80324|pseudouridylate synthase 1	1.916609	0.61263	CTCF.p2:-10:0.602	denovo_WM_7:21:0.595	denovo_WM_7:22:0.254	denovo_WM_7:39:0.517	denovo_WM_7:40:0.465
chr19	16493431	16493503	reg1007040.p1	3.781	+	AF134053 TSC_hg19_v1_chr19_+_16435803	-57698	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	-57826	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	-184717	+	BC142662 AB527825 AF110265 BC131590 BC037558 TSC_hg19_v1_chr19_-_16582771 AB015346 NM_021235 BC067114 BC051873 BC142716 AK296473 AK297428 AK024166	89309	-	TSC_hg19_v1_chr19_-_16582810 AK291359	89385	-	CU677059 AB576176 DQ890903 DQ894056 AK058084 BC014595 NM_145046	113503	-	AF134053|KLF2|10365|Kruppel-like factor 2 (lung)##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC142662|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AF110265|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC131590|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC037558|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB015346|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##NM_021235|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC067114|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC051873|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##BC142716|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK296473|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK297428|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK024166|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AK291359|EPS15L1|58513|epidermal growth factor receptor pathway substrate 15-like 1##AB576176|CALR3|125972|calreticulin 3##DQ890903|CALR3|125972|calreticulin 3##DQ894056|CALR3|125972|calreticulin 3##AK058084|CALR3|125972|calreticulin 3##BC014595|CALR3|125972|calreticulin 3##NM_145046|CALR3|125972|calreticulin 3	0.999038	0.0	denovo_WM_7:-26:0.790
chr19	39042115	39042243	reg1008003.p2	3.781	+	TSC_hg19_v1_chr19_+_38924330 NM_000540 NM_001042723 J05200	-117835	+	AF448437 BC146669 BC150202 BC142721 BC151216 TSC_hg19_v1_chr19_-_38916860 AX721071 AY048119 AY048120 AY048121 FJ768677 FJ768678 FJ768679 FJ768680 FJ768681 FJ768682 NM_001146202 NM_001146203 NM_001146204 NM_001146205 NM_001146206 NM_001146207 NM_170604	-125307	-	TSC_hg19_v1_chr19_+_38893839 BC080606 AK128745	-148278	+	AB527182 TSC_hg19_v1_chr19_-_39108593 NM_001042600 NM_007181	66409	-	TSC_hg19_v1_chr19_+_39109725 NM_013234 AF077051 AF085358 AB019392 AY245432	67534	+	TSC_hg19_v1_chr19_+_39109825 BC007559 AK298635	67637	+	NM_000540|RYR1|6261|ryanodine receptor 1 (skeletal)##NM_001042723|RYR1|6261|ryanodine receptor 1 (skeletal)##J05200|RYR1|6261|ryanodine receptor 1 (skeletal)##AF448437|RASGRP4|115727|RAS guanyl releasing protein 4##BC146669|RASGRP4|115727|RAS guanyl releasing protein 4##BC150202|RASGRP4|115727|RAS guanyl releasing protein 4##BC142721|RASGRP4|115727|RAS guanyl releasing protein 4##BC151216|RASGRP4|115727|RAS guanyl releasing protein 4##AY048119|RASGRP4|115727|RAS guanyl releasing protein 4##AY048120|RASGRP4|115727|RAS guanyl releasing protein 4##AY048121|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768677|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768678|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768679|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768680|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768681|RASGRP4|115727|RAS guanyl releasing protein 4##FJ768682|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146202|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146203|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146204|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146205|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146206|RASGRP4|115727|RAS guanyl releasing protein 4##NM_001146207|RASGRP4|115727|RAS guanyl releasing protein 4##NM_170604|RASGRP4|115727|RAS guanyl releasing protein 4##BC080606|FAM98C|147965|family with sequence similarity 98, member C##AK128745|FAM98C|147965|family with sequence similarity 98, member C##NM_001042600|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_007181|MAP4K1|11184|mitogen-activated protein kinase kinase kinase kinase 1##NM_013234|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF077051|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AF085358|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AB019392|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AY245432|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##BC007559|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K##AK298635|EIF3K|27335|eukaryotic translation initiation factor 3, subunit K	0.0	0.0	
chr6	84481650	84481775	reg1017961.p1	3.781	+	BC036650 TSC_hg19_v1_chr6_-_84419108 BC060818 NM_001242793 NM_001242794 NM_014841	-62595	-	BC044579 TSC_hg19_v1_chr6_-_84419072 CR749348	-62657	-	TSC_hg19_v1_chr6_-_84418819 AB014556 AK289582 NM_001242792	-62935	-	NM_001009994 BC130460 BC132968 HQ258714	81347	+	TSC_hg19_v1_chr6_+_84569385 NM_016230	87666	+	TSC_hg19_v1_chr6_+_84569407 AK313146 BC025380 AL832113	87690	+	BC036650|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##BC060818|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##NM_001242793|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##NM_001242794|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##NM_014841|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##BC044579|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##CR749348|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##AB014556|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##AK289582|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##NM_001242792|SNAP91|9892|synaptosomal-associated protein, 91kDa homolog (mouse)##NM_001009994|RIPPLY2|134701|ripply2 homolog (zebrafish)##BC130460|RIPPLY2|134701|ripply2 homolog (zebrafish)##BC132968|RIPPLY2|134701|ripply2 homolog (zebrafish)##HQ258714|RIPPLY2|134701|ripply2 homolog (zebrafish)##NM_016230|CYB5R4|51167|cytochrome b5 reductase 4##AK313146|CYB5R4|51167|cytochrome b5 reductase 4##BC025380|CYB5R4|51167|cytochrome b5 reductase 4##AL832113|CYB5R4|51167|cytochrome b5 reductase 4	0.06147	0.0	
chr7	56142112	56142201	reg1018611.p2	3.781	+	AK297793 TSC_hg19_v1_chr7_+_56132003 AY323911 BC006159 BC015600 BC000224	-10135	+	BC065222 TSC_hg19_v1_chr7_+_56131978 CR936757 AK298605 CR936749 AY359103 BC084539 AK297042 AK301627 AL050037	-10171	+	NM_001042469 NM_001042470 NM_001130069 NM_001146333 NM_015411 TSC_hg19_v1_chr7_+_56131966 AK075477 AK300488 BC111092	-10215	+	BC069655 BC069679 BC069738 BC069754 X80590 BC051327 AK300928 AK293180 AK299429 AK309503 AK312851 NM_006213	18490	-	AY605046 CU688146 EU832651 EU832729 AY633613 BC015639 TSC_hg19_v1_chr7_-_56174144 BC100275 Z36851 BC003079 BC071985 BC066331	31969	-	TSC_hg19_v1_chr7_-_56174151 AF078845	32003	-	AK297793|SUMF2|25870|sulfatase modifying factor 2##AY323911|SUMF2|25870|sulfatase modifying factor 2##BC006159|SUMF2|25870|sulfatase modifying factor 2##BC015600|SUMF2|25870|sulfatase modifying factor 2##BC000224|SUMF2|25870|sulfatase modifying factor 2##BC065222|SUMF2|25870|sulfatase modifying factor 2##CR936757|SUMF2|25870|sulfatase modifying factor 2##AK298605|SUMF2|25870|sulfatase modifying factor 2##CR936749|SUMF2|25870|sulfatase modifying factor 2##AY359103|SUMF2|25870|sulfatase modifying factor 2##BC084539|SUMF2|25870|sulfatase modifying factor 2##AK297042|SUMF2|25870|sulfatase modifying factor 2##AK301627|SUMF2|25870|sulfatase modifying factor 2##AL050037|SUMF2|25870|sulfatase modifying factor 2##NM_001042469|SUMF2|25870|sulfatase modifying factor 2##NM_001042470|SUMF2|25870|sulfatase modifying factor 2##NM_001130069|SUMF2|25870|sulfatase modifying factor 2##NM_001146333|SUMF2|25870|sulfatase modifying factor 2##NM_015411|SUMF2|25870|sulfatase modifying factor 2##AK075477|SUMF2|25870|sulfatase modifying factor 2##AK300488|SUMF2|25870|sulfatase modifying factor 2##BC111092|SUMF2|25870|sulfatase modifying factor 2##BC069655|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069679|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069738|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC069754|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##X80590|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##BC051327|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK300928|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK293180|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK299429|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK309503|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AK312851|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##NM_006213|PHKG1|5260|phosphorylase kinase, gamma 1 (muscle)##AY605046|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832651|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##EU832729|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AY633613|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC015639|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC100275|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC003079|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC071985|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##BC066331|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2##AF078845|CHCHD2|51142|coiled-coil-helix-coiled-coil-helix domain containing 2	0.0	0.911006	CTCF.p2:28:0.911
chrX	19861041	19861162	reg1014465.p2	3.781	+	TSC_hg19_v1_chrX_-_19817907 NM_001024666	-43189	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	-43226	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	-172045	-	TSC_hg19_v1_chrX_-_19905450 AY542305	44362	-	TSC_hg19_v1_chrX_-_19905646 BC050663 BC015806	44531	-	TSC_hg19_v1_chrX_-_19905675 AK313308 AF230904 AY423734 NM_031892	44603	-	NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY542305|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC050663|SH3KBP1|30011|SH3-domain kinase binding protein 1##BC015806|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK313308|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF230904|SH3KBP1|30011|SH3-domain kinase binding protein 1##AY423734|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_031892|SH3KBP1|30011|SH3-domain kinase binding protein 1	1.237206	0.0	denovo_WM_7:32:0.255	denovo_WM_7:47:0.246
chr10	4075692	4075804	reg1014556.p1	3.780	+	TSC_hg19_v1_chr10_-_3827432 NM_001160124 NM_001160125 NM_001300	-248239	-	BT006778 AB528304 CU674150 DQ890752 FJ619623 U44975 AF001461 TSC_hg19_v1_chr10_-_3827402 AB017493 BC004301 BC000311 AK316596 AK293259	-248437	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	-860743	-	TSC_hg19_v1_chr10_+_4868471 BC023972 AK074211 NM_001040177 BC002862 AK302155 AB040820 AB040821 AB040822 AF263242 CU678252 AB055603	792670	+	NM_001353 TSC_hg19_v1_chr10_+_5005576	929766	+	TSC_hg19_v1_chr10_+_5005606 AK310658 AK303435 BC020216 BC015490 M86609 U05684 DQ891484 DQ893923 AB031083 BT007197 CU677313 DQ269985 S68290	929875	+	NM_001160124|KLF6|1316|Kruppel-like factor 6##NM_001160125|KLF6|1316|Kruppel-like factor 6##NM_001300|KLF6|1316|Kruppel-like factor 6##BT006778|KLF6|1316|Kruppel-like factor 6##DQ890752|KLF6|1316|Kruppel-like factor 6##FJ619623|KLF6|1316|Kruppel-like factor 6##U44975|KLF6|1316|Kruppel-like factor 6##AF001461|KLF6|1316|Kruppel-like factor 6##AB017493|KLF6|1316|Kruppel-like factor 6##BC004301|KLF6|1316|Kruppel-like factor 6##BC000311|KLF6|1316|Kruppel-like factor 6##AK316596|KLF6|1316|Kruppel-like factor 6##AK293259|KLF6|1316|Kruppel-like factor 6##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1##BC023972|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK074211|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001040177|AKR1E2|83592|aldo-keto reductase family 1, member E2##BC002862|AKR1E2|83592|aldo-keto reductase family 1, member E2##AK302155|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040820|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040821|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB040822|AKR1E2|83592|aldo-keto reductase family 1, member E2##AF263242|AKR1E2|83592|aldo-keto reductase family 1, member E2##AB055603|AKR1E2|83592|aldo-keto reductase family 1, member E2##NM_001353|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AK310658|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC020216|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BC015490|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##M86609|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##U05684|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ891484|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ893923|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##AB031083|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##BT007197|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)##DQ269985|AKR1C3|8644|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)##S68290|AKR1C1|1645|aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase)	0.0	0.0	
chr14	101120667	101120755	reg1011277.p1	3.780	+	BC002607 NM_020836	-84581	-	AB527893 CU678064 EU832622 EU832695 NM_001159531	-86378	-	TSC_hg19_v1_chr14_+_100842812 NM_001161476 BX248767 AK291960 NM_024515 BC067872 AY295082	-277873	+	TSC_hg19_v1_chr14_+_101193228 NM_003836 AK289384 AK297918 AK313258 BC007741 BC014015	72512	+	TSC_hg19_v1_chr14_+_101193275 BC013197	72569	+	TSC_hg19_v1_chr14_+_101193330 CU675787 DQ017081 DQ126100 DQ138965 Z12172	72648	+	BC002607|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_020836|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##EU832622|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##EU832695|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_001159531|BEGAIN|57596|brain-enriched guanylate kinase-associated homolog (rat)##NM_001161476|WDR25|79446|WD repeat domain 25##BX248767|WDR25|79446|WD repeat domain 25##AK291960|WDR25|79446|WD repeat domain 25##NM_024515|WDR25|79446|WD repeat domain 25##BC067872|WDR25|79446|WD repeat domain 25##AY295082|WDR25|79446|WD repeat domain 25##NM_003836|DLK1|8788|delta-like 1 homolog (Drosophila)##AK289384|DLK1|8788|delta-like 1 homolog (Drosophila)##AK297918|DLK1|8788|delta-like 1 homolog (Drosophila)##AK313258|DLK1|8788|delta-like 1 homolog (Drosophila)##BC007741|DLK1|8788|delta-like 1 homolog (Drosophila)##BC014015|DLK1|8788|delta-like 1 homolog (Drosophila)##BC013197|DLK1|8788|delta-like 1 homolog (Drosophila)##DQ017081|DLK1|8788|delta-like 1 homolog (Drosophila)##DQ126100|DLK1|8788|delta-like 1 homolog (Drosophila)##DQ138965|DLK1|8788|delta-like 1 homolog (Drosophila)##Z12172|DLK1|8788|delta-like 1 homolog (Drosophila)	0.0	0.0	
chr15	96456739	96456868	reg1018704.p2	3.780	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-586484	-	NM_001159644 BC025708 BC111024 AK002037	-1557494	+	NM_001159643 NM_018349 AY656717 BC131527	-1615342	+	BC106083 NM_001145155 FM208183	412358	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	417174	+	AK316086 NM_001145156	418990	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	1.22614	0.0	denovo_WM_7:9:0.460	denovo_WM_7:10:0.396
chr17	20676156	20676263	reg1014753.p2	3.780	+	NM_001190790	-193173	+	BC105943 AK290263 NM_001042685 AK296659	-305374	-	TSC_hg19_v1_chr17_+_20224469 BC036241	-451743	+	AK057473 TSC_hg19_v1_chr17_+_20771859 BC041488 EF565107	95596	+	CU686685 BC068597 NM_001004306	123183	-	TSC_hg19_v1_chr17_-_20946322 AB590105 AB028986 NM_015276	270063	-	NM_001190790|CDRT15L2|256223|CMT1A duplicated region transcript 15-like 2##BC105943|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##AK290263|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##NM_001042685|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##AK296659|LGALS9B|284194|lectin, galactoside-binding, soluble, 9B##BC036241|CCDC144C|348254|coiled-coil domain containing 144C##BC068597|CCDC144NL|339184|coiled-coil domain containing 144 family, N-terminal like##NM_001004306|CCDC144NL|339184|coiled-coil domain containing 144 family, N-terminal like##AB028986|USP22|23326|ubiquitin specific peptidase 22##NM_015276|USP22|23326|ubiquitin specific peptidase 22	1.968785	0.0	denovo_WM_7:1:0.848	denovo_WM_7:-13:0.849
chr1	86862058	86862193	reg1005646.p2	3.780	+	BC091490 TSC_hg19_v1_chr1_-_86862004 AB033055 BC047368 BC009779 BC012579 AK308351 AK302792 BC026105 AK303209 NM_001007022 NM_001184765 NM_001184766 NM_020729	-150	-	BC116180 BC113654 BC117170 BC143715 BC143717 BC143718 AY244357 NM_152890	-240012	-	TSC_hg19_v1_chr1_-_86174088 AL442074 BC026236 AK298149 NM_001170670 NM_017953	-688012	-	NM_006536 AF043977 AK296719 AK290348 AK307937 BC041096 AB026833 AF127980	27724	+	NM_001285 TSC_hg19_v1_chr1_+_86934607 AK314375 AK291999 AK097057 AF127036	72462	+	NM_012128 AK000072 AK314430 BC113687 BC113689 AF127035 AY358470 HQ258531 AK307785 AK307898 AK293766	150716	+	BC091490|ODF2L|57489|outer dense fiber of sperm tails 2-like##AB033055|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC047368|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC009779|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC012579|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK308351|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK302792|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC026105|ODF2L|57489|outer dense fiber of sperm tails 2-like##AK303209|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001007022|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001184765|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_001184766|ODF2L|57489|outer dense fiber of sperm tails 2-like##NM_020729|ODF2L|57489|outer dense fiber of sperm tails 2-like##BC116180|COL24A1|255631|collagen, type XXIV, alpha 1##BC113654|COL24A1|255631|collagen, type XXIV, alpha 1##BC117170|COL24A1|255631|collagen, type XXIV, alpha 1##BC143715|COL24A1|255631|collagen, type XXIV, alpha 1##BC143717|COL24A1|255631|collagen, type XXIV, alpha 1##BC143718|COL24A1|255631|collagen, type XXIV, alpha 1##AY244357|COL24A1|255631|collagen, type XXIV, alpha 1##NM_152890|COL24A1|255631|collagen, type XXIV, alpha 1##AL442074|ZNHIT6|54680|zinc finger, HIT-type containing 6##BC026236|ZNHIT6|54680|zinc finger, HIT-type containing 6##AK298149|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_001170670|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_017953|ZNHIT6|54680|zinc finger, HIT-type containing 6##NM_006536|CLCA2|9635|chloride channel accessory 2##AF043977|CLCA2|9635|chloride channel accessory 2##AK290348|CLCA2|9635|chloride channel accessory 2##AK307937|CLCA2|9635|chloride channel accessory 2##BC041096|CLCA2|9635|chloride channel accessory 2##AB026833|CLCA2|9635|chloride channel accessory 2##AF127980|CLCA2|9635|chloride channel accessory 2##NM_001285|CLCA1|1179|chloride channel accessory 1##AK314375|CLCA1|1179|chloride channel accessory 1##AK291999|CLCA1|1179|chloride channel accessory 1##AK097057|CLCA1|1179|chloride channel accessory 1##AF127036|CLCA1|1179|chloride channel accessory 1##NM_012128|CLCA4|22802|chloride channel accessory 4##AK000072|CLCA4|22802|chloride channel accessory 4##AK314430|CLCA4|22802|chloride channel accessory 4##BC113687|CLCA4|22802|chloride channel accessory 4##BC113689|CLCA4|22802|chloride channel accessory 4##AF127035|CLCA4|22802|chloride channel accessory 4##AY358470|CLCA4|22802|chloride channel accessory 4##HQ258531|CLCA4|22802|chloride channel accessory 4##AK307785|CLCA4|22802|chloride channel accessory 4##AK307898|CLCA4|22802|chloride channel accessory 4##AK293766|CLCA4|22802|chloride channel accessory 4	0.0	0.0	
chr7	112726325	112726505	reg1014595.p1	3.780	+	AL834437 AK299901 TSC_hg19_v1_chr7_-_112579931 BC114615 AK056380 NM_152556	-146585	-	AK293311 TSC_hg19_v1_chr7_-_112430447 AK314460 AL136626 AK025482 NM_022484	-295972	-	NM_001134468 BC031976 AK096894 NM_182597	-605429	+	AK297464 AK312587 NM_001146266 AL161959 NM_001146267 TSC_hg19_v1_chr7_-_112726667	80	-	BC030577 TSC_hg19_v1_chr7_-_112727780	1365	-	TSC_hg19_v1_chr7_-_112727812 AK309392 AF250237 AK302769	1392	-	AL834437|C7orf60|154743|chromosome 7 open reading frame 60##AK299901|C7orf60|154743|chromosome 7 open reading frame 60##BC114615|C7orf60|154743|chromosome 7 open reading frame 60##AK056380|C7orf60|154743|chromosome 7 open reading frame 60##NM_152556|C7orf60|154743|chromosome 7 open reading frame 60##AK293311|TMEM168|64418|transmembrane protein 168##AK314460|TMEM168|64418|transmembrane protein 168##AL136626|TMEM168|64418|transmembrane protein 168##AK025482|TMEM168|64418|transmembrane protein 168##NM_022484|TMEM168|64418|transmembrane protein 168##NM_001134468|C7orf53|286006|chromosome 7 open reading frame 53##BC031976|C7orf53|286006|chromosome 7 open reading frame 53##AK096894|C7orf53|286006|chromosome 7 open reading frame 53##NM_182597|C7orf53|286006|chromosome 7 open reading frame 53##AK297464|GPR85|54329|G protein-coupled receptor 85##AK312587|GPR85|54329|G protein-coupled receptor 85##NM_001146266|GPR85|54329|G protein-coupled receptor 85##AL161959|GPR85|54329|G protein-coupled receptor 85##NM_001146267|GPR85|54329|G protein-coupled receptor 85##BC030577|GPR85|54329|G protein-coupled receptor 85##AK309392|GPR85|54329|G protein-coupled receptor 85##AF250237|GPR85|54329|G protein-coupled receptor 85##AK302769|GPR85|54329|G protein-coupled receptor 85	3.704022	0.0	denovo_WM_7:22:0.782	denovo_WM_7:39:0.495	denovo_WM_7:77:0.248
chr7	17380463	17380597	reg1019298.p1	3.780	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	-42261	+	AY359065 BC058284 NM_176813	-458926	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-535859	-	TSC_hg19_v1_chr7_+_17382906 BC021696	2376	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	599519	-	TSC_hg19_v1_chr7_-_17980118 AL353943 AK315135 AK294582 NM_015132	599597	-	AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13##AL353943|SNX13|23161|sorting nexin 13##AK315135|SNX13|23161|sorting nexin 13##AK294582|SNX13|23161|sorting nexin 13##NM_015132|SNX13|23161|sorting nexin 13	0.088371	0.0	
chr12	82350796	82350867	reg1008260.p1	3.779	+	AK307524 AF034799 NM_003625 TSC_hg19_v1_chr12_-_82153127	-197722	-	BC104912 BC143485 NM_001220475 NM_001220476 AK126971 TSC_hg19_v1_chr12_-_82152435 AB210009 NM_001220473 NM_001220474	-198460	-	AK294505 AK297372 AK299853 NM_001220477 NM_001220478	-358777	-	CU676598 TSC_hg19_v1_chr12_-_82752167 BC020647 AF213377 AF161477 AK001156 AK225139 NM_014167	401345	-	NM_032230 TSC_hg19_v1_chr12_+_82752307 AK310231 AK026442 BC029120 CU688600	401478	+	TSC_hg19_v1_chr12_+_83080684 AX795392 AX795396 BC098572	729869	+	AK307524|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AF034799|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_003625|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC104912|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC143485|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220475|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220476|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK126971|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AB210009|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220473|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220474|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK294505|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK297372|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##AK299853|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220477|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##NM_001220478|PPFIA2|8499|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2##BC020647|CCDC59|29080|coiled-coil domain containing 59##AF213377|CCDC59|29080|coiled-coil domain containing 59##AF161477|CCDC59|29080|coiled-coil domain containing 59##AK001156|CCDC59|29080|coiled-coil domain containing 59##AK225139|CCDC59|29080|coiled-coil domain containing 59##NM_014167|CCDC59|29080|coiled-coil domain containing 59##NM_032230|C12orf26|84190|chromosome 12 open reading frame 26##AK310231|C12orf26|84190|chromosome 12 open reading frame 26##AK026442|C12orf26|84190|chromosome 12 open reading frame 26##BC029120|C12orf26|84190|chromosome 12 open reading frame 26##AX795392|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2##BC098572|TMTC2|160335|transmembrane and tetratricopeptide repeat containing 2	0.979756	0.0	
chr16	2732435	2732556	reg1015728.p2	3.779	+	BC063714 TSC_hg19_v1_chr16_-_2723400 AK091794 AX747190 BC043252	-9090	-	AK096394 TSC_hg19_v1_chr16_+_2653445 BC093998 BC111952 AK291606 BC062576 BC036664 BC056242 BC105289 BC080650	-79078	+	BC033494 TSC_hg19_v1_chr16_+_2588066 AB463382 DQ892297 DQ895496 EU832784 GQ129441 CU689632 CR536517 BC040324	-144388	+	TSC_hg19_v1_chr16_+_2732524 NM_018992 AK000047	4	+	TSC_hg19_v1_chr16_+_2732528 BC007314	96	+	BC036912 NM_031948	38056	-	AK091794|ERVK13-1|100507321|endogenous retrovirus group K13, member 1##AX747190|ERVK13-1|100507321|endogenous retrovirus group K13, member 1##BC043252|ERVK13-1|100507321|endogenous retrovirus group K13, member 1##AK096394|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC093998|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC111952|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##AK291606|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC062576|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC036664|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC056242|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC105289|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC080650|LOC652276|652276|potassium channel tetramerisation domain containing 5 pseudogene##BC033494|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##DQ892297|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##DQ895496|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##EU832784|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##GQ129441|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##CR536517|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##BC040324|PDPK1|5170|3-phosphoinositide dependent protein kinase-1##NM_018992|KCTD5|54442|potassium channel tetramerisation domain containing 5##AK000047|KCTD5|54442|potassium channel tetramerisation domain containing 5##BC007314|KCTD5|54442|potassium channel tetramerisation domain containing 5##BC036912|PRSS27|83886|protease, serine 27##NM_031948|PRSS27|83886|protease, serine 27	0.0	0.0	
chr17	17095754	17095934	reg1009192.p1	3.779	+	TSC_hg19_v1_chr17_+_16945770 NM_015134 NM_201274 BC136479 AB098507 AB384537 AB189741 AY296247	-149880	+	AY302137 AK301032 AX772740 AK303298 BC109392 AF023614 AK223453 AX766384 NM_012452 AK313302	-220440	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	-502240	+	TSC_hg19_v1_chr17_-_17109624 AK090899 AX746668	13769	-	TSC_hg19_v1_chr17_-_17109636 BC031263 AK295282 NM_178836	13813	-	TSC_hg19_v1_chr17_-_17140464 AF517523 BC015687	44601	-	NM_015134|MPRIP|23164|myosin phosphatase Rho interacting protein##NM_201274|MPRIP|23164|myosin phosphatase Rho interacting protein##BC136479|MPRIP|23164|myosin phosphatase Rho interacting protein##AB098507|MPRIP|23164|myosin phosphatase Rho interacting protein##AB189741|MPRIP|23164|myosin phosphatase Rho interacting protein##AY296247|MPRIP|23164|myosin phosphatase Rho interacting protein##AY302137|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##BC109392|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AF023614|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK223453|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AX766384|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##NM_012452|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##AK313302|TNFRSF13B|23495|tumor necrosis factor receptor superfamily, member 13B##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A##AK090899|PLD6|201164|phospholipase D family, member 6##BC031263|PLD6|201164|phospholipase D family, member 6##AK295282|PLD6|201164|phospholipase D family, member 6##NM_178836|PLD6|201164|phospholipase D family, member 6##AF517523|FLCN|201163|folliculin##BC015687|FLCN|201163|folliculin	0.994524	0.0	denovo_WM_7:-64:0.981
chr17	4118713	4118860	reg1009660.p1	3.779	+	TSC_hg19_v1_chr17_+_4046995 AK313088 AK172844 BC020263 CU690822 DQ891696 DQ894877	-71777	+	TSC_hg19_v1_chr17_+_4046490 NM_144611 BC051697	-72303	+	TSC_hg19_v1_chr17_-_4046308 AK127482	-72476	-	AB462945 AB033081 TSC_hg19_v1_chr17_-_4167252 AB037360 BC052308 AK025483 AK057047 AK225170 AK292930 BC060812 AK302712 NM_016376 NM_020740	48365	-	BT007416 D78514 TSC_hg19_v1_chr17_-_4269807 BC026288	150925	-	TSC_hg19_v1_chr17_-_4269937 AK313059 BC002775 NM_003342	151122	-	AK313088|CYB5D2|124936|cytochrome b5 domain containing 2##AK172844|CYB5D2|124936|cytochrome b5 domain containing 2##BC020263|CYB5D2|124936|cytochrome b5 domain containing 2##DQ891696|CYB5D2|124936|cytochrome b5 domain containing 2##DQ894877|CYB5D2|124936|cytochrome b5 domain containing 2##NM_144611|CYB5D2|124936|cytochrome b5 domain containing 2##BC051697|CYB5D2|124936|cytochrome b5 domain containing 2##AK127482|ZZEF1|23140|zinc finger, ZZ-type with EF-hand domain 1##AB033081|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AB037360|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC052308|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK025483|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK057047|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK225170|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK292930|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BC060812|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##AK302712|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_016376|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##NM_020740|ANKFY1|51479|ankyrin repeat and FYVE domain containing 1##BT007416|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##D78514|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC026288|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##AK313059|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##BC002775|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1##NM_003342|UBE2G1|7326|ubiquitin-conjugating enzyme E2G 1	0.0	0.953623	CTCF.p2:37:0.954
chr17	73004622	73004802	reg1005838.p2	3.779	+	TSC_hg19_v1_chr17_+_72983726 AK294006 BC047534 NM_014603	-20971	+	TSC_hg19_v1_chr17_-_72968846 AK304081 BC035372 AK074401 AL137556 AK095565 BC032219 NM_030630	-35864	-	CU690082 AB527292 TSC_hg19_v1_chr17_-_72968758	-35958	-	TSC_hg19_v1_chr17_+_73008770 AK222553 AK314138 BC015335 NM_001545 X81788 CU677269 DQ890655 DQ893834 BT007111	4065	+	TSC_hg19_v1_chr17_+_73028670 AK311278 AK307083	23976	+	TSC_hg19_v1_chr17_-_73043063 AF070650 BC029392 AF061735 BC038092 AF087135 AK312230 NM_001003785 NM_006356	38346	-	AK294006|CDR2L|30850|cerebellar degeneration-related protein 2-like##BC047534|CDR2L|30850|cerebellar degeneration-related protein 2-like##NM_014603|CDR2L|30850|cerebellar degeneration-related protein 2-like##AK304081|C17orf28|283987|chromosome 17 open reading frame 28##BC035372|C17orf28|283987|chromosome 17 open reading frame 28##AK074401|C17orf28|283987|chromosome 17 open reading frame 28##AL137556|C17orf28|283987|chromosome 17 open reading frame 28##AK095565|C17orf28|283987|chromosome 17 open reading frame 28##BC032219|C17orf28|283987|chromosome 17 open reading frame 28##NM_030630|C17orf28|283987|chromosome 17 open reading frame 28##AK222553|ICT1|3396|immature colon carcinoma transcript 1##AK314138|ICT1|3396|immature colon carcinoma transcript 1##BC015335|ICT1|3396|immature colon carcinoma transcript 1##NM_001545|ICT1|3396|immature colon carcinoma transcript 1##X81788|ICT1|3396|immature colon carcinoma transcript 1##DQ890655|ICT1|3396|immature colon carcinoma transcript 1##DQ893834|ICT1|3396|immature colon carcinoma transcript 1##BT007111|ICT1|3396|immature colon carcinoma transcript 1##AK307083|KCTD2|23510|potassium channel tetramerisation domain containing 2##AF070650|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC029392|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF061735|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##BC038092|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AF087135|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##AK312230|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##NM_001003785|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d##NM_006356|ATP5H|10476|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d	0.99801	0.0	denovo_WM_7:19:0.298	denovo_WM_7:20:0.298	denovo_WM_7:21:0.298
chr19	35847145	35847275	reg1014597.p1	3.779	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	-4760	+	TSC_hg19_v1_chr19_+_35820089 NM_001185099 NM_001185100 NM_001185101 NM_001771 AK026467 AK225625 AK225694 AK301177 X59350 BC109307	-27119	+	NM_001199216 NM_002361 NM_080600 AK223562 BC093045 TSC_hg19_v1_chr19_+_35783063 BC034042 AK094545 AK222649 AK308976 M29273 AB209170 AK294644 AK222680 BC053347	-64168	+	AK290710 NM_005304 BC035657	2284	+	AB378083 AB464537 BC096198 BC096199 BC096200 BC096201 NM_005306 BC095535	93407	+	AM392574 AM392667 AM392672 AM392738 AM392847 AM392851 AM393397 AM393477 AY359007 HQ258707 BC130501 NM_001244847 NM_207392	134178	-	NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##NM_001185099|CD22|933|CD22 molecule##NM_001185100|CD22|933|CD22 molecule##NM_001185101|CD22|933|CD22 molecule##NM_001771|CD22|933|CD22 molecule##AK026467|CD22|933|CD22 molecule##AK225625|CD22|933|CD22 molecule##AK225694|CD22|933|CD22 molecule##AK301177|CD22|933|CD22 molecule##X59350|CD22|933|CD22 molecule##BC109307|CD22|933|CD22 molecule##NM_001199216|MAG|4099|myelin associated glycoprotein##NM_002361|MAG|4099|myelin associated glycoprotein##NM_080600|MAG|4099|myelin associated glycoprotein##AK223562|MAG|4099|myelin associated glycoprotein##BC093045|MAG|4099|myelin associated glycoprotein##BC034042|MAG|4099|myelin associated glycoprotein##AK094545|MAG|4099|myelin associated glycoprotein##AK222649|MAG|4099|myelin associated glycoprotein##AK308976|MAG|4099|myelin associated glycoprotein##M29273|MAG|4099|myelin associated glycoprotein##AK294644|MAG|4099|myelin associated glycoprotein##AK222680|MAG|4099|myelin associated glycoprotein##BC053347|MAG|4099|myelin associated glycoprotein##AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3##AB378083|FFAR2|2867|free fatty acid receptor 2##BC096198|FFAR2|2867|free fatty acid receptor 2##BC096199|FFAR2|2867|free fatty acid receptor 2##BC096200|FFAR2|2867|free fatty acid receptor 2##BC096201|FFAR2|2867|free fatty acid receptor 2##NM_005306|FFAR2|2867|free fatty acid receptor 2##BC095535|FFAR2|2867|free fatty acid receptor 2##AM392574|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392667|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392672|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392738|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392847|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392851|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393397|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393477|KRTDAP|388533|keratinocyte differentiation-associated protein##AY359007|KRTDAP|388533|keratinocyte differentiation-associated protein##HQ258707|KRTDAP|388533|keratinocyte differentiation-associated protein##BC130501|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_001244847|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_207392|KRTDAP|388533|keratinocyte differentiation-associated protein	1.05744	0.0	
chr20	6828816	6828925	reg1015099.p2	3.779	+	BC069214 NM_001200	-80126	+	TSC_hg19_v1_chr20_-_6104078 AB105105 NM_017671	-724707	-	BC035882 TSC_hg19_v1_chr20_-_6103891	-724993	-	AB024079 HQ258212 AF244134 AF231916 NM_017545 AK308963 BC113665 BC113667 TSC_hg19_v1_chr20_-_7921106 AK313839 AL121739 AK289423	1092232	-	TSC_hg19_v1_chr20_-_8000347 AB464296 BC033787 BC021964	1171430	-	TSC_hg19_v1_chr20_-_8000409 AY359004 NM_021156 AK074838	1171537	-	BC069214|BMP2|650|bone morphogenetic protein 2##NM_001200|BMP2|650|bone morphogenetic protein 2##AB105105|FERMT1|55612|fermitin family member 1##NM_017671|FERMT1|55612|fermitin family member 1##BC035882|FERMT1|55612|fermitin family member 1##AB024079|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##HQ258212|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF244134|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AF231916|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##NM_017545|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK308963|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113665|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC113667|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK313839|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AL121739|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##AK289423|HAO1|54363|hydroxyacid oxidase (glycolate oxidase) 1##BC033787|TMX4|56255|thioredoxin-related transmembrane protein 4##BC021964|TMX4|56255|thioredoxin-related transmembrane protein 4##AY359004|TMX4|56255|thioredoxin-related transmembrane protein 4##NM_021156|TMX4|56255|thioredoxin-related transmembrane protein 4##AK074838|TMX4|56255|thioredoxin-related transmembrane protein 4	0.0	0.0	
chr2	131094650	131094796	reg1016388.p1	3.779	+	TSC_hg19_v1_chr2_+_130986934 AK297320	-107789	+	AK131043 BC057811 NM_207312	-138701	-	TSC_hg19_v1_chr2_+_130939834 HQ258550 BC014255	-154904	+	TSC_hg19_v1_chr2_-_131099709 AK124405 BC006429 AK295922 AK054693 NM_032357	5048	-	TSC_hg19_v1_chr2_+_131100469 AK289878 AK292345 AK312808	5745	+	TSC_hg19_v1_chr2_+_131100487 BC010042 NM_033416	5763	+	AK131043|TUBA3E|112714|tubulin, alpha 3e##BC057811|TUBA3E|112714|tubulin, alpha 3e##NM_207312|TUBA3E|112714|tubulin, alpha 3e##BC014255|MZT2B|80097|mitotic spindle organizing protein 2B##AK124405|CCDC115|84317|coiled-coil domain containing 115##BC006429|CCDC115|84317|coiled-coil domain containing 115##AK295922|CCDC115|84317|coiled-coil domain containing 115##AK054693|CCDC115|84317|coiled-coil domain containing 115##NM_032357|CCDC115|84317|coiled-coil domain containing 115##AK289878|IMP4|92856|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AK292345|IMP4|92856|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)##AK312808|IMP4|92856|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)##BC010042|IMP4|92856|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)##NM_033416|IMP4|92856|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)	0.998589	0.0	denovo_WM_7:-39:0.457	denovo_WM_7:-40:0.457
chr2	197369625	197369723	reg1013428.p1	3.779	+	TSC_hg19_v1_chr2_-_197036310 NM_004226	-333356	-	BC052561 AB011421 BC016040 TSC_hg19_v1_chr2_-_197036280	-333395	-	AB463018 AF327442 AK094515 NM_018897 AB023161	-436179	-	BC117194 BC117198 AB037722 NM_020760	87618	-	AK302685 AK096979 NM_001080539 TSC_hg19_v1_chr2_+_197504417 AK303236 AK299214 AK309349	134683	+	AB385239 BC043347 BC036952 TSC_hg19_v1_chr2_-_197664407 AF465407 AK025560 AF133123 AK314718 NM_001206774 NM_012086	294739	-	NM_004226|STK17B|9262|serine/threonine kinase 17b##BC052561|STK17B|9262|serine/threonine kinase 17b##AB011421|STK17B|9262|serine/threonine kinase 17b##BC016040|STK17B|9262|serine/threonine kinase 17b##AF327442|DNAH7|56171|dynein, axonemal, heavy chain 7##AK094515|DNAH7|56171|dynein, axonemal, heavy chain 7##NM_018897|DNAH7|56171|dynein, axonemal, heavy chain 7##AB023161|DNAH7|56171|dynein, axonemal, heavy chain 7##BC117194|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##BC117198|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AB037722|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##NM_020760|HECW2|57520|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2##AK302685|CCDC150|284992|coiled-coil domain containing 150##AK096979|CCDC150|284992|coiled-coil domain containing 150##NM_001080539|CCDC150|284992|coiled-coil domain containing 150##AK303236|CCDC150|284992|coiled-coil domain containing 150##AK299214|CCDC150|284992|coiled-coil domain containing 150##AK309349|CCDC150|284992|coiled-coil domain containing 150##BC043347|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##BC036952|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF465407|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK025560|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AF133123|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##AK314718|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_001206774|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa##NM_012086|GTF3C3|9330|general transcription factor IIIC, polypeptide 3, 102kDa	0.034055	0.0	
chr22	50161045	50161151	reg1015357.p2	3.779	+	AK124962 TSC_hg19_v1_chr22_-_50051168 BC033837 BC048207	-109965	-	AK125256 NM_015381 AK123443 AY358847	-1188937	+	TSC_hg19_v1_chr22_+_48885255 NM_001082967 BC039396 AF131851	-1275818	+	AF005067 NM_014577	57353	-	AK292428 TSC_hg19_v1_chr22_-_50221332 BC030007 BC047508	60168	-	TSC_hg19_v1_chr22_-_50221517 AK304776	60383	-	AK124962|C22orf34|348645|chromosome 22 open reading frame 34##BC048207|C22orf34|348645|chromosome 22 open reading frame 34##AK125256|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_015381|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AK123443|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AY358847|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##NM_001082967|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##BC039396|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF131851|FAM19A5|25817|family with sequence similarity 19 (chemokine (C-C motif)-like), member A5##AF005067|BRD1|23774|bromodomain containing 1##NM_014577|BRD1|23774|bromodomain containing 1##AK292428|BRD1|23774|bromodomain containing 1##BC030007|BRD1|23774|bromodomain containing 1##BC047508|BRD1|23774|bromodomain containing 1##AK304776|BRD1|23774|bromodomain containing 1	0.0	0.435529	CTCF.p2:32:0.436
chr5	52688113	52688243	reg1018829.p2	3.779	+	TSC_hg19_v1_chr5_-_52405588 BC029287 AF091871 AF117815 AK312887 NM_176806 BC095417	-282582	-	BC046097 AF155659 NM_004531	-282873	-	TSC_hg19_v1_chr5_+_52285182 NM_002203 AK307952 X17033 BC143505 BC143508 BC143509 BC143511 BC143512 AB385225	-403058	+	NM_006350 NM_013409 TSC_hg19_v1_chr5_+_52776278	88099	+	TSC_hg19_v1_chr5_+_52776409 BC004107	88234	+	TSC_hg19_v1_chr5_+_52776479 AB451330 AB451474 CR541813 DQ893433 DQ896745	88372	+	BC029287|MOCS2|4338|molybdenum cofactor synthesis 2##AF091871|MOCS2|4338|molybdenum cofactor synthesis 2##AF117815|MOCS2|4338|molybdenum cofactor synthesis 2##AK312887|MOCS2|4338|molybdenum cofactor synthesis 2##NM_176806|MOCS2|4338|molybdenum cofactor synthesis 2##BC095417|MOCS2|4338|molybdenum cofactor synthesis 2##BC046097|MOCS2|4338|molybdenum cofactor synthesis 2##AF155659|MOCS2|4338|molybdenum cofactor synthesis 2##NM_004531|MOCS2|4338|molybdenum cofactor synthesis 2##NM_002203|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##AK307952|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##X17033|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143505|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143508|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143509|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143511|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##BC143512|ITGA2|3673|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)##NM_006350|FST|10468|follistatin##NM_013409|FST|10468|follistatin##BC004107|FST|10468|follistatin##AB451330|FST|10468|follistatin##AB451474|FST|10468|follistatin##CR541813|FST|10468|follistatin##DQ893433|FST|10468|follistatin##DQ896745|FST|10468|follistatin	0.0	0.0	
chr7	51434910	51435042	reg1015070.p1	3.779	+	TSC_hg19_v1_chr7_-_51384501 BC094695 AB014533 BC150263 AK309254 BC111496 NM_015198	-50490	-	AB385366 TSC_hg19_v1_chr7_-_51384416 BC136441 BC144099	-50596	-	TSC_hg19_v1_chr7_-_50861150 NM_001001555	-573822	-	NM_182595	1668372	+	NM_182546 TSC_hg19_v1_chr7_+_54610091 BC028404	3175106	+	TSC_hg19_v1_chr7_-_54826876 BC009480 AK308617 AF086539	3391903	-	BC094695|COBL|23242|cordon-bleu homolog (mouse)##AB014533|COBL|23242|cordon-bleu homolog (mouse)##BC150263|COBL|23242|cordon-bleu homolog (mouse)##AK309254|COBL|23242|cordon-bleu homolog (mouse)##BC111496|COBL|23242|cordon-bleu homolog (mouse)##NM_015198|COBL|23242|cordon-bleu homolog (mouse)##BC136441|COBL|23242|cordon-bleu homolog (mouse)##BC144099|COBL|23242|cordon-bleu homolog (mouse)##NM_001001555|GRB10|2887|growth factor receptor-bound protein 10##NM_182595|POM121L12|285877|POM121 membrane glycoprotein-like 12##NM_182546|VSTM2A|222008|V-set and transmembrane domain containing 2A##BC028404|VSTM2A|222008|V-set and transmembrane domain containing 2A##BC009480|SEC61G|23480|Sec61 gamma subunit##AK308617|SEC61G|23480|Sec61 gamma subunit##AF086539|SEC61G|23480|Sec61 gamma subunit	0.0	0.961211	CTCF.p2:-28:0.961
chr7	56114897	56114973	reg1017998.p1	3.779	+	TSC_hg19_v1_chr7_-_56101850 AK315235	-13084	-	TSC_hg19_v1_chr7_+_56032277 NM_001202469 NM_001483 AK097049 AK315648 BC030821 AF029786 BC000732 BC001837 AJ001259 AB528140 AM392838 BT007112 CR407612 CU674374 DQ892309 DQ895508	-82518	+	TSC_hg19_v1_chr7_+_56019577 AK026553 BC047445 AF077035 NM_015969 BC054031	-95354	+	BC063614 BX537439 TSC_hg19_v1_chr7_-_56119246 AK054677 NM_004577 BC052958	4274	-	NM_001009186 NM_001762 TSC_hg19_v1_chr7_+_56119432 AB063318	4471	+	TSC_hg19_v1_chr7_+_56119457 L27706 BC106941 BC106942	4515	+	AK315235|PSPH|5723|phosphoserine phosphatase##NM_001202469|GBAS|2631|glioblastoma amplified sequence##NM_001483|GBAS|2631|glioblastoma amplified sequence##AK097049|GBAS|2631|glioblastoma amplified sequence##AK315648|GBAS|2631|glioblastoma amplified sequence##BC030821|GBAS|2631|glioblastoma amplified sequence##AF029786|GBAS|2631|glioblastoma amplified sequence##BC000732|GBAS|2631|glioblastoma amplified sequence##BC001837|GBAS|2631|glioblastoma amplified sequence##AJ001259|GBAS|2631|glioblastoma amplified sequence##AM392838|GBAS|2631|glioblastoma amplified sequence##BT007112|GBAS|2631|glioblastoma amplified sequence##CR407612|GBAS|2631|glioblastoma amplified sequence##DQ892309|GBAS|2631|glioblastoma amplified sequence##DQ895508|GBAS|2631|glioblastoma amplified sequence##AK026553|MRPS17|51373|mitochondrial ribosomal protein S17##BC047445|MRPS17|51373|mitochondrial ribosomal protein S17##AF077035|MRPS17|51373|mitochondrial ribosomal protein S17##NM_015969|MRPS17|51373|mitochondrial ribosomal protein S17##BC054031|MRPS17|51373|mitochondrial ribosomal protein S17##BC063614|PSPH|5723|phosphoserine phosphatase##BX537439|PSPH|5723|phosphoserine phosphatase##AK054677|PSPH|5723|phosphoserine phosphatase##NM_004577|PSPH|5723|phosphoserine phosphatase##BC052958|PSPH|5723|phosphoserine phosphatase##NM_001009186|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##NM_001762|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##AB063318|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##L27706|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##BC106941|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)##BC106942|CCT6A|908|chaperonin containing TCP1, subunit 6A (zeta 1)	0.993899	0.0	denovo_WM_7:-13:0.970
chr9	82269111	82269228	reg1014050.p1	3.779	+	TSC_hg19_v1_chr9_+_82187610 AB033087 AK302709 AK296342 AB463316	-81484	+	TSC_hg19_v1_chr9_+_82187539 BC036369 BC059405 AK057236	-81645	+	TSC_hg19_v1_chr9_+_82186879 NM_007005	-82283	+	BC010100 NM_005077	2034426	-	TSC_hg19_v1_chr9_-_84304463 AB209854	2035258	-	NM_001145197 AK125847 AK308327	2274202	+	AB033087|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK302709|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK296342|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC036369|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC059405|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##AK057236|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##NM_007005|TLE4|7091|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)##BC010100|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_005077|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##AB209854|TLE1|7088|transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)##NM_001145197|FAM75D4|389761|family with sequence similarity 75, member D4##AK125847|FAM75D4|389761|family with sequence similarity 75, member D4##AK308327|FAM75D4|389761|family with sequence similarity 75, member D4	1.020306	0.0	denovo_WM_7:-13:0.239	denovo_WM_7:-14:0.239	denovo_WM_7:-15:0.239	denovo_WM_7:-16:0.239
chr10	98178902	98179018	reg1017436.p1	3.778	+	AF367761 NM_001040102 NM_001040103 NM_033207	-59886	-	NM_001017520 NM_004088 AB046378 AK313615 M26144 BC012920 AK223317 DQ891465 DQ894645	-114792	+	AM180327 AM180328 AM180329 AM180330 AM180331 AM180332 AM180333 AM180334 AM180335 AM180336 AM180337 AM180338 AM180339 AM180340 AM180341 AM180342 AM180343 AM180344 AM180345 AM180346 BC018906 BC110298 AK027779 AF068180 AF068181 AK225546 NM_001114094 NM_013314	-147717	-	AB384048 BC113577 BC112341 BC112366 AB023149 BC013871 BC030548 TSC_hg19_v1_chr10_-_98273674 AK026106 NM_012465	94603	-	AK075451 TSC_hg19_v1_chr10_-_98290333	111377	-	AK074824 TSC_hg19_v1_chr10_-_98321895	142900	-	AF367761|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040102|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001040103|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_033207|OPALIN|93377|oligodendrocytic myelin paranodal and inner loop protein##NM_001017520|DNTT|1791|deoxynucleotidyltransferase, terminal##NM_004088|DNTT|1791|deoxynucleotidyltransferase, terminal##AB046378|DNTT|1791|deoxynucleotidyltransferase, terminal##AK313615|DNTT|1791|deoxynucleotidyltransferase, terminal##M26144|DNTT|1791|deoxynucleotidyltransferase, terminal##BC012920|DNTT|1791|deoxynucleotidyltransferase, terminal##AK223317|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ891465|DNTT|1791|deoxynucleotidyltransferase, terminal##DQ894645|DNTT|1791|deoxynucleotidyltransferase, terminal##AM180327|BLNK|29760|B-cell linker##AM180328|BLNK|29760|B-cell linker##AM180329|BLNK|29760|B-cell linker##AM180330|BLNK|29760|B-cell linker##AM180331|BLNK|29760|B-cell linker##AM180332|BLNK|29760|B-cell linker##AM180333|BLNK|29760|B-cell linker##AM180334|BLNK|29760|B-cell linker##AM180335|BLNK|29760|B-cell linker##AM180336|BLNK|29760|B-cell linker##AM180337|BLNK|29760|B-cell linker##AM180338|BLNK|29760|B-cell linker##AM180339|BLNK|29760|B-cell linker##AM180340|BLNK|29760|B-cell linker##AM180341|BLNK|29760|B-cell linker##AM180342|BLNK|29760|B-cell linker##AM180343|BLNK|29760|B-cell linker##AM180344|BLNK|29760|B-cell linker##AM180345|BLNK|29760|B-cell linker##AM180346|BLNK|29760|B-cell linker##BC018906|BLNK|29760|B-cell linker##BC110298|BLNK|29760|B-cell linker##AK027779|BLNK|29760|B-cell linker##AF068180|BLNK|29760|B-cell linker##AF068181|BLNK|29760|B-cell linker##AK225546|BLNK|29760|B-cell linker##NM_001114094|BLNK|29760|B-cell linker##NM_013314|BLNK|29760|B-cell linker##BC113577|TLL2|7093|tolloid-like 2##BC112341|TLL2|7093|tolloid-like 2##BC112366|TLL2|7093|tolloid-like 2##AB023149|TLL2|7093|tolloid-like 2##BC013871|TLL2|7093|tolloid-like 2##BC030548|TLL2|7093|tolloid-like 2##AK026106|TLL2|7093|tolloid-like 2##NM_012465|TLL2|7093|tolloid-like 2##AK075451|TM9SF3|56889|transmembrane 9 superfamily member 3##AK074824|TM9SF3|56889|transmembrane 9 superfamily member 3	0.0	0.0	
chr3	169667370	169667437	reg1013258.p2	3.778	+	BX648991 BX648534 BX648989 BX537903 NM_182610	-37983	+	HQ258307 BC117401 BC143569 BC143582 AY358138 AK097338 NM_024727 AK026912	-79746	-	NM_001080460	-127694	+	TSC_hg19_v1_chr3_+_169684598 NM_003262 AK294504 BC003677 BC007040 BC012035 BX648539 D87127 U93239 EU832302 EU832386	17185	+	TSC_hg19_v1_chr3_+_169755748 NM_014373	88351	+	TSC_hg19_v1_chr3_+_169755782 BC000181	88387	+	BX648991|SAMD7|344658|sterile alpha motif domain containing 7##BX648534|SAMD7|344658|sterile alpha motif domain containing 7##BX648989|SAMD7|344658|sterile alpha motif domain containing 7##BX537903|SAMD7|344658|sterile alpha motif domain containing 7##NM_182610|SAMD7|344658|sterile alpha motif domain containing 7##HQ258307|LRRC31|79782|leucine rich repeat containing 31##BC117401|LRRC31|79782|leucine rich repeat containing 31##BC143569|LRRC31|79782|leucine rich repeat containing 31##BC143582|LRRC31|79782|leucine rich repeat containing 31##AY358138|LRRC31|79782|leucine rich repeat containing 31##AK097338|LRRC31|79782|leucine rich repeat containing 31##NM_024727|LRRC31|79782|leucine rich repeat containing 31##AK026912|LRRC31|79782|leucine rich repeat containing 31##NM_001080460|LRRIQ4|344657|leucine-rich repeats and IQ motif containing 4##NM_003262|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC003677|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC007040|SEC62|7095|SEC62 homolog (S. cerevisiae)##BC012035|SEC62|7095|SEC62 homolog (S. cerevisiae)##BX648539|SEC62|7095|SEC62 homolog (S. cerevisiae)##D87127|SEC62|7095|SEC62 homolog (S. cerevisiae)##U93239|SEC62|7095|SEC62 homolog (S. cerevisiae)##EU832302|SEC62|7095|SEC62 homolog (S. cerevisiae)##EU832386|SEC62|7095|SEC62 homolog (S. cerevisiae)##NM_014373|GPR160|26996|G protein-coupled receptor 160##BC000181|GPR160|26996|G protein-coupled receptor 160	0.24421	0.0	denovo_WM_7:39:0.218
chr3	56956296	56956406	reg1009464.p2	3.778	+	AB463227 AL136832 AX775923 BC054345 TSC_hg19_v1_chr3_-_56835978 BC098122 BC098272 BC099715 BC104723 AF249744 AK308178 AK225688 AK291412 BC068513 BC094748 NM_019555	-120440	-	AK293864 AB209661 NM_001128616	-146682	-	BC070096 NM_001112736 TSC_hg19_v1_chr3_-_56717266 AK094486	-239144	-	AY221117 NM_181727 BC126274 BC136498	138152	+	AF433662 AK302493 NM_001128615	156962	-	AF458067 TSC_hg19_v1_chr3_-_57199347	242982	-	AL136832|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AX775923|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC054345|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098122|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC098272|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC099715|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC104723|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF249744|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK308178|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK225688|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK291412|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC068513|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC094748|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_019555|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK293864|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AB209661|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128616|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##BC070096|FAM208A|23272|family with sequence similarity 208, member A##NM_001112736|FAM208A|23272|family with sequence similarity 208, member A##AK094486|FAM208A|23272|family with sequence similarity 208, member A##AY221117|SPATA12|353324|spermatogenesis associated 12##NM_181727|SPATA12|353324|spermatogenesis associated 12##BC126274|SPATA12|353324|spermatogenesis associated 12##BC136498|SPATA12|353324|spermatogenesis associated 12##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AF458067|IL17RD|54756|interleukin 17 receptor D	0.033388	0.0	
chr5	133366167	133366250	reg1015681.p1	3.778	+	AK095989 NM_003374	-25385	-	TSC_hg19_v1_chr5_-_133340431 L06132	-25778	-	TSC_hg19_v1_chr5_-_133340397 BC071168 AK293639	-25807	-	TSC_hg19_v1_chr5_+_133450435 BC048769 NM_003202 BC072023 EU446661 AL832816	84311	+	NM_001134851 NM_201632 NM_201634 NM_213648 X59869 X59870 X59871 AK057580 AK093530	85153	+	BC009839 U33760 BC025673 TSC_hg19_v1_chr5_-_133512639 BC065730	146415	-	AK095989|VDAC1|7416|voltage-dependent anion channel 1##NM_003374|VDAC1|7416|voltage-dependent anion channel 1##L06132|VDAC1|7416|voltage-dependent anion channel 1##BC071168|VDAC1|7416|voltage-dependent anion channel 1##AK293639|VDAC1|7416|voltage-dependent anion channel 1##BC048769|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_003202|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC072023|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##EU446661|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AL832816|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_001134851|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201632|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_201634|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##NM_213648|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59869|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59870|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##X59871|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK057580|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##AK093530|TCF7|6932|transcription factor 7 (T-cell specific, HMG-box)##BC009839|SKP1|6500|S-phase kinase-associated protein 1##U33760|SKP1|6500|S-phase kinase-associated protein 1##BC025673|SKP1|6500|S-phase kinase-associated protein 1##BC065730|SKP1|6500|S-phase kinase-associated protein 1	0.986606	0.0	denovo_WM_7:89:0.987
chr7	100157341	100157454	reg1003815.p1	3.778	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	-20490	+	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	-20586	+	AK124773 NM_173564	-75848	+	NM_001168682	13872	-	AB528535 DQ893565 DQ894240 TSC_hg19_v1_chr7_-_100183751 AK074833 AK302410	26340	-	TSC_hg19_v1_chr7_-_100183753 BC018529 NM_002319	26378	-	AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa##DQ893565|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##DQ894240|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK074833|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##AK302410|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##BC018529|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4##NM_002319|LRCH4|4034|leucine-rich repeats and calponin homology (CH) domain containing 4	0.998858	0.0	denovo_WM_7:51:0.314	denovo_WM_7:52:0.314	denovo_WM_7:53:0.314
chrX	90537232	90537335	reg1012077.p1	3.778	+	BC117398 BC117400 NM_138960 BC101144 BC101145 AF497480 BC029920 AB464725 HQ258115	-1360272	+	NM_001184771 NM_033048 AK098646 AK313768 BC027614	-2535043	+	NM_019117 NM_057162 AK056457 AB051474 BC161675 AL832514 AF284765 AF284766 BC140839 BC140840 BC142652 BC146677 AB385497	-3764478	+	NM_080832	152313	+	NM_032967 AJ276804 AJ564847 AK299638 AK299813 AK316263 TSC_hg19_v1_chrX_+_91034373	497034	+	AB026187 AF332218 AF332219 AJ564932 NM_014522 NM_032968 NM_032969	552375	+	BC117398|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC117400|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_138960|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101144|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC101145|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##AF497480|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##BC029920|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##HQ258115|TGIF2LX|90316|TGFB-induced factor homeobox 2-like, X-linked##NM_001184771|CPXCR1|53336|CPX chromosome region, candidate 1##NM_033048|CPXCR1|53336|CPX chromosome region, candidate 1##AK098646|CPXCR1|53336|CPX chromosome region, candidate 1##AK313768|CPXCR1|53336|CPX chromosome region, candidate 1##BC027614|CPXCR1|53336|CPX chromosome region, candidate 1##NM_019117|KLHL4|56062|kelch-like 4 (Drosophila)##NM_057162|KLHL4|56062|kelch-like 4 (Drosophila)##AK056457|KLHL4|56062|kelch-like 4 (Drosophila)##AB051474|KLHL4|56062|kelch-like 4 (Drosophila)##BC161675|KLHL4|56062|kelch-like 4 (Drosophila)##AL832514|KLHL4|56062|kelch-like 4 (Drosophila)##AF284765|KLHL4|56062|kelch-like 4 (Drosophila)##AF284766|KLHL4|56062|kelch-like 4 (Drosophila)##BC140839|KLHL4|56062|kelch-like 4 (Drosophila)##BC140840|KLHL4|56062|kelch-like 4 (Drosophila)##BC142652|KLHL4|56062|kelch-like 4 (Drosophila)##BC146677|KLHL4|56062|kelch-like 4 (Drosophila)##NM_080832|PABPC5|140886|poly(A) binding protein, cytoplasmic 5##NM_032967|PCDH11X|27328|protocadherin 11 X-linked##AJ276804|PCDH11X|27328|protocadherin 11 X-linked##AJ564847|PCDH11X|27328|protocadherin 11 X-linked##AK299813|PCDH11X|27328|protocadherin 11 X-linked##AK316263|PCDH11X|27328|protocadherin 11 X-linked##AB026187|PCDH11X|27328|protocadherin 11 X-linked##AF332218|PCDH11X|27328|protocadherin 11 X-linked##AF332219|PCDH11X|27328|protocadherin 11 X-linked##AJ564932|PCDH11X|27328|protocadherin 11 X-linked##NM_014522|PCDH11X|27328|protocadherin 11 X-linked##NM_032968|PCDH11X|27328|protocadherin 11 X-linked##NM_032969|PCDH11X|27328|protocadherin 11 X-linked	0.997312	0.0	
chr1	21110248	21110315	reg1019410.p1	3.777	+	AK124869 NM_001103160 NM_001103161	-51149	-	AK296431 TSC_hg19_v1_chr1_-_21058714	-51574	-	AB463089 BC065927 AB290162 NM_001122819 NM_020816	-66022	-	TSC_hg19_v1_chr1_-_21113146 BC053327 BC032139	2837	-	TSC_hg19_v1_chr1_-_21113155 AK291252	2871	-	TSC_hg19_v1_chr1_-_21113163 AK023129 NM_016287	2891	-	AK124869|SH2D5|400745|SH2 domain containing 5##NM_001103160|SH2D5|400745|SH2 domain containing 5##NM_001103161|SH2D5|400745|SH2 domain containing 5##AK296431|SH2D5|400745|SH2 domain containing 5##BC065927|KIF17|57576|kinesin family member 17##AB290162|KIF17|57576|kinesin family member 17##NM_001122819|KIF17|57576|kinesin family member 17##NM_020816|KIF17|57576|kinesin family member 17##BC053327|HP1BP3|50809|heterochromatin protein 1, binding protein 3##BC032139|HP1BP3|50809|heterochromatin protein 1, binding protein 3##AK291252|HP1BP3|50809|heterochromatin protein 1, binding protein 3##AK023129|HP1BP3|50809|heterochromatin protein 1, binding protein 3##NM_016287|HP1BP3|50809|heterochromatin protein 1, binding protein 3	1.009222	0.0	
chr1	29210709	29210792	reg1019664.p1	3.777	+	NM_000911 U07882	-72097	+	TSC_hg19_v1_chr1_+_29063503 AK303833 NM_001172828 AF432214 AF155095 AF192968 DQ892157 DQ895352 CU678040 AB451335 AB451484	-147213	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	-147467	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	2841	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	2907	+	TSC_hg19_v1_chr1_+_29241080 NM_001166006 BC039079 AK310655	30331	+	NM_000911|OPRD1|4985|opioid receptor, delta 1##U07882|OPRD1|4985|opioid receptor, delta 1##AK303833|YTHDF2|51441|YTH domain family, member 2##NM_001172828|YTHDF2|51441|YTH domain family, member 2##AF432214|YTHDF2|51441|YTH domain family, member 2##AF155095|YTHDF2|51441|YTH domain family, member 2##AF192968|YTHDF2|51441|YTH domain family, member 2##DQ892157|YTHDF2|51441|YTH domain family, member 2##DQ895352|YTHDF2|51441|YTH domain family, member 2##AB451335|YTHDF2|51441|YTH domain family, member 2##AB451484|YTHDF2|51441|YTH domain family, member 2##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166006|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##BC039079|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##AK310655|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.474431	0.0	
chr13	32525869	32525948	reg1016155.p2	3.777	+	TSC_hg19_v1_chr13_+_32420857 BC021729	-105006	+	NM_001166058 NM_130806 AF453828 AB527208 AY899851	-212195	+	AK291273 TSC_hg19_v1_chr13_+_31774136 BC068595 AB101481 AY190526	-751698	+	AL049784 NM_023037 U50534 TSC_hg19_v1_chr13_+_32605446	79533	+	BC146956 BC146965 NM_001136571	360181	-	TSC_hg19_v1_chr13_+_32889621 NM_000059 U43746 BC026160 BC047568	363709	+	BC021729|EEF1DP3|196549|eukaryotic translation elongation factor 1 delta pseudogene 3##NM_001166058|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##NM_130806|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AF453828|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AY899851|RXFP2|122042|relaxin/insulin-like family peptide receptor 2##AK291273|B3GALTL|145173|beta 1,3-galactosyltransferase-like##BC068595|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AB101481|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AY190526|B3GALTL|145173|beta 1,3-galactosyltransferase-like##AL049784|FRY|10129|furry homolog (Drosophila)##NM_023037|FRY|10129|furry homolog (Drosophila)##U50534|FRY|10129|furry homolog (Drosophila)##BC146956|ZAR1L|646799|zygote arrest 1-like##BC146965|ZAR1L|646799|zygote arrest 1-like##NM_001136571|ZAR1L|646799|zygote arrest 1-like##NM_000059|BRCA2|675|breast cancer 2, early onset##U43746|BRCA2|675|breast cancer 2, early onset##BC026160|BRCA2|675|breast cancer 2, early onset##BC047568|BRCA2|675|breast cancer 2, early onset	0.0	0.0	
chr18	66532479	66532578	reg1017459.p1	3.777	+	NM_024781 CR749520	-67186	+	NM_001093729 AK308114 AK091108	-150009	+	TSC_hg19_v1_chr18_-_66382346 AK122715 BC107422 NM_019022 BX647846 AK310389	-150092	-	TSC_hg19_v1_chr18_+_67068214 NM_152721 AY599248 BC096744	535702	+	AK313199 TSC_hg19_v1_chr18_-_67615110	1082571	-	GU935335 GU935336 U56102 NM_006566	1091667	-	NM_024781|CCDC102B|79839|coiled-coil domain containing 102B##CR749520|CCDC102B|79839|coiled-coil domain containing 102B##NM_001093729|CCDC102B|79839|coiled-coil domain containing 102B##AK308114|CCDC102B|79839|coiled-coil domain containing 102B##AK091108|CCDC102B|79839|coiled-coil domain containing 102B##AK122715|TMX3|54495|thioredoxin-related transmembrane protein 3##BC107422|TMX3|54495|thioredoxin-related transmembrane protein 3##NM_019022|TMX3|54495|thioredoxin-related transmembrane protein 3##BX647846|TMX3|54495|thioredoxin-related transmembrane protein 3##AK310389|TMX3|54495|thioredoxin-related transmembrane protein 3##NM_152721|DOK6|220164|docking protein 6##AY599248|DOK6|220164|docking protein 6##BC096744|DOK6|220164|docking protein 6##AK313199|CD226|10666|CD226 molecule##GU935335|CD226|10666|CD226 molecule##GU935336|CD226|10666|CD226 molecule##U56102|CD226|10666|CD226 molecule##NM_006566|CD226|10666|CD226 molecule	0.0	0.0	
chr22	22117682	22117802	reg1015534.p1	3.777	+	BC034486 BC074501 TSC_hg19_v1_chr22_-_22090057 BC048303 NM_013313 AB098734 AB098735	-27694	-	NM_014337 NM_148175 NM_148176 TSC_hg19_v1_chr22_+_22020298 AF320072 AK289545 BC000022 U37219 AK127259 BC028385 AK299206 CR456548 DQ891659 DQ894846 AB463162 CU013148 CU013436 CU673996 CU688484	-97413	+	TSC_hg19_v1_chr22_+_21996619 CR456570 AF277316 AB528230 BC139837 CU013169 CU013457	-121103	+	TSC_hg19_v1_chr22_-_22221936 DQ399292 AB384931 EU176323 EU831429 EU831522 AK307615 Z11694 AK090869 BC099905	104087	-	AK295188 TSC_hg19_v1_chr22_-_22221938	104195	-	TSC_hg19_v1_chr22_-_22221955 BC017832 NM_002745 NM_138957	104228	-	BC034486|YPEL1|29799|yippee-like 1 (Drosophila)##BC074501|YPEL1|29799|yippee-like 1 (Drosophila)##BC048303|YPEL1|29799|yippee-like 1 (Drosophila)##NM_013313|YPEL1|29799|yippee-like 1 (Drosophila)##AB098734|YPEL1|29799|yippee-like 1 (Drosophila)##AB098735|YPEL1|29799|yippee-like 1 (Drosophila)##NM_014337|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148175|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##NM_148176|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AF320072|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK289545|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC000022|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##U37219|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK127259|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##BC028385|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##AK299206|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456548|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ891659|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##DQ894846|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013148|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CU013436|PPIL2|23759|peptidylprolyl isomerase (cyclophilin)-like 2##CR456570|SDF2L1|23753|stromal cell-derived factor 2-like 1##AF277316|SDF2L1|23753|stromal cell-derived factor 2-like 1##BC139837|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013169|SDF2L1|23753|stromal cell-derived factor 2-like 1##CU013457|SDF2L1|23753|stromal cell-derived factor 2-like 1##DQ399292|MAPK1|5594|mitogen-activated protein kinase 1##EU176323|MAPK1|5594|mitogen-activated protein kinase 1##EU831429|MAPK1|5594|mitogen-activated protein kinase 1##EU831522|MAPK1|5594|mitogen-activated protein kinase 1##AK307615|MAPK1|5594|mitogen-activated protein kinase 1##Z11694|MAPK1|5594|mitogen-activated protein kinase 1##AK090869|MAPK1|5594|mitogen-activated protein kinase 1##BC099905|MAPK1|5594|mitogen-activated protein kinase 1##AK295188|MAPK1|5594|mitogen-activated protein kinase 1##BC017832|MAPK1|5594|mitogen-activated protein kinase 1##NM_002745|MAPK1|5594|mitogen-activated protein kinase 1##NM_138957|MAPK1|5594|mitogen-activated protein kinase 1	0.0	0.0	
chr2	47395234	47395352	reg1004389.p2	3.777	+	AK097491 NM_001163561 NM_173649	-12823	-	TSC_hg19_v1_chr2_-_47168913 NM_001171508 NM_001171511	-226346	-	AK292127 TSC_hg19_v1_chr2_-_47168875 AK293889	-226420	-	TSC_hg19_v1_chr2_-_47403624 M19311 BC003354 BC006464	8333	-	AK315694 BC017385 BC018677 BC026065 D45887 TSC_hg19_v1_chr2_-_47403651	8357	-	TSC_hg19_v1_chr2_-_47403656 BC008437	8361	-	AK097491|C2orf61|285051|chromosome 2 open reading frame 61##NM_001163561|C2orf61|285051|chromosome 2 open reading frame 61##NM_173649|C2orf61|285051|chromosome 2 open reading frame 61##NM_001171508|MCFD2|90411|multiple coagulation factor deficiency 2##NM_001171511|MCFD2|90411|multiple coagulation factor deficiency 2##AK292127|MCFD2|90411|multiple coagulation factor deficiency 2##AK293889|MCFD2|90411|multiple coagulation factor deficiency 2##M19311|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC003354|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC006464|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##AK315694|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC017385|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC018677|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC026065|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##D45887|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)##BC008437|CALM2|805|calmodulin 2 (phosphorylase kinase, delta)	0.0	0.0	
chr3	115188521	115188657	reg1018596.p1	3.777	+	TSC_hg19_v1_chr3_-_114866114 BC010934 BX647778 BX648237 NM_015642	-322475	-	BC090936 NM_001164343	-398349	-	AK225788 NM_001164344 NM_001164345	-710469	-	NM_001130064 NM_002045	153561	+	TSC_hg19_v1_chr3_+_115342501 AK289699 M25667 AK313658 BX648458 AK290100 BC007936 AM392759 AM393509 DQ893244 DQ896574 AB463057 BT019771 BT019810	153830	+	AK315286 TSC_hg19_v1_chr3_-_116164338	975742	-	BC010934|ZBTB20|26137|zinc finger and BTB domain containing 20##BX647778|ZBTB20|26137|zinc finger and BTB domain containing 20##BX648237|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_015642|ZBTB20|26137|zinc finger and BTB domain containing 20##BC090936|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164343|ZBTB20|26137|zinc finger and BTB domain containing 20##AK225788|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164344|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001164345|ZBTB20|26137|zinc finger and BTB domain containing 20##NM_001130064|GAP43|2596|growth associated protein 43##NM_002045|GAP43|2596|growth associated protein 43##AK289699|GAP43|2596|growth associated protein 43##M25667|GAP43|2596|growth associated protein 43##AK313658|GAP43|2596|growth associated protein 43##BX648458|GAP43|2596|growth associated protein 43##AK290100|GAP43|2596|growth associated protein 43##BC007936|GAP43|2596|growth associated protein 43##AM392759|GAP43|2596|growth associated protein 43##AM393509|GAP43|2596|growth associated protein 43##DQ893244|GAP43|2596|growth associated protein 43##DQ896574|GAP43|2596|growth associated protein 43##BT019771|GAP43|2596|growth associated protein 43##BT019810|GAP43|2596|growth associated protein 43##AK315286|LSAMP|4045|limbic system-associated membrane protein	0.990695	0.0	denovo_WM_7:-79:0.228	denovo_WM_7:-80:0.228	denovo_WM_7:-81:0.228	denovo_WM_7:-82:0.228
chr3	119357419	119357485	reg1006761.p2	3.777	+	NM_001206960 NM_001206961 NM_015900 AK301880 AK222705 AK313519 BC035347 BC047703 U37591 AF035268 AF035269 AB527604 CU690470	-40725	+	BC063883 NM_001125 TSC_hg19_v1_chr3_+_119298606	-58887	+	TSC_hg19_v1_chr3_+_119298355 AK304560 AK291787	-59057	+	CU692240 AF204173 NM_022135 AK314819 BC044929	21900	-	TSC_hg19_v1_chr3_-_119396232 AK312143 BC105280 BC010933 L77701 NM_005694 BC108317	38794	-	TSC_hg19_v1_chr3_+_119421876 AF440403 BC035248 CR749242 NM_033364 AF497717 AK055558 BC126394 AK302699 AK309317 AK294413 AK303997 AK289914 HQ258654	64450	+	NM_001206960|PLA1A|51365|phospholipase A1 member A##NM_001206961|PLA1A|51365|phospholipase A1 member A##NM_015900|PLA1A|51365|phospholipase A1 member A##AK301880|PLA1A|51365|phospholipase A1 member A##AK222705|PLA1A|51365|phospholipase A1 member A##AK313519|PLA1A|51365|phospholipase A1 member A##BC035347|PLA1A|51365|phospholipase A1 member A##BC047703|PLA1A|51365|phospholipase A1 member A##U37591|PLA1A|51365|phospholipase A1 member A##AF035268|PLA1A|51365|phospholipase A1 member A##AF035269|PLA1A|51365|phospholipase A1 member A##BC063883|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001125|ADPRH|141|ADP-ribosylarginine hydrolase##AK304560|ADPRH|141|ADP-ribosylarginine hydrolase##AK291787|ADPRH|141|ADP-ribosylarginine hydrolase##AF204173|POPDC2|64091|popeye domain containing 2##NM_022135|POPDC2|64091|popeye domain containing 2##AK314819|POPDC2|64091|popeye domain containing 2##BC044929|POPDC2|64091|popeye domain containing 2##AK312143|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC105280|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC010933|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##L77701|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_005694|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC108317|COX17|10063|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)##AF440403|C3orf15|89876|chromosome 3 open reading frame 15##BC035248|C3orf15|89876|chromosome 3 open reading frame 15##CR749242|C3orf15|89876|chromosome 3 open reading frame 15##NM_033364|C3orf15|89876|chromosome 3 open reading frame 15##AF497717|C3orf15|89876|chromosome 3 open reading frame 15##AK055558|C3orf15|89876|chromosome 3 open reading frame 15##BC126394|C3orf15|89876|chromosome 3 open reading frame 15##AK302699|C3orf15|89876|chromosome 3 open reading frame 15##AK309317|C3orf15|89876|chromosome 3 open reading frame 15##AK294413|C3orf15|89876|chromosome 3 open reading frame 15##AK303997|C3orf15|89876|chromosome 3 open reading frame 15##AK289914|C3orf15|89876|chromosome 3 open reading frame 15##HQ258654|C3orf15|89876|chromosome 3 open reading frame 15	0.994789	0.0	denovo_WM_7:41:0.873
chr6	21611167	21611332	reg1004101.p2	3.777	+	TSC_hg19_v1_chr6_+_21593981 NM_003107 AF070669 AF124147 BC072668 X70683 BC021970 AB385573 EU446655	-16877	+	TSC_hg19_v1_chr6_+_20534737 AK128546 AK309457 NM_017774 AK291735 AK310219 BC064145 AK000349 BC121020 BC121021	-1076526	+	CR749285 NM_001243076	-1207216	+	AK300802 AK026189 TSC_hg19_v1_chr6_+_21666674	55410	+	BC015850 NM_000948	686480	-	X54394 X54393 GQ305133 M58594 NM_001163558	691798	-	NM_003107|SOX4|6659|SRY (sex determining region Y)-box 4##AF070669|SOX4|6659|SRY (sex determining region Y)-box 4##AF124147|SOX4|6659|SRY (sex determining region Y)-box 4##BC072668|SOX4|6659|SRY (sex determining region Y)-box 4##X70683|SOX4|6659|SRY (sex determining region Y)-box 4##EU446655|SOX4|6659|SRY (sex determining region Y)-box 4##AK128546|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK309457|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##NM_017774|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK291735|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK310219|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC064145|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##AK000349|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121020|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##BC121021|CDKAL1|54901|CDK5 regulatory subunit associated protein 1-like 1##CR749285|E2F3|1871|E2F transcription factor 3##NM_001243076|E2F3|1871|E2F transcription factor 3##AK300802|LINC00340|401237|long intergenic non-protein coding RNA 340##AK026189|LINC00340|401237|long intergenic non-protein coding RNA 340##BC015850|PRL|5617|prolactin##NM_000948|PRL|5617|prolactin##X54394|PRL|5617|prolactin##X54393|PRL|5617|prolactin##GQ305133|PRL|5617|prolactin##M58594|PRL|5617|prolactin##NM_001163558|PRL|5617|prolactin	0.990761	0.0	denovo_WM_7:34:0.491	denovo_WM_7:35:0.286	denovo_WM_7:36:0.214
chr8	28232865	28232951	reg1018728.p1	3.777	+	NM_006228 U48263 TSC_hg19_v1_chr8_+_28174784 AK289633 AY335948 BC034758	-58183	+	NM_018091 TSC_hg19_v1_chr8_+_27950679 AK302140 AK296475 AK022626 AK295574 AK001284 AK293424 AK315985 AK316053 AK298265 BC001240 AL834273 AB463602 AM392633	-282251	+	AB075870 NM_001010906	-291521	-	BC001237 TSC_hg19_v1_chr8_-_28243694	10734	-	AK002050 AK023418 NM_018660 AB057659 AB073627	11053	-	BC074986 AF453435 TSC_hg19_v1_chr8_-_28347805 BC102026 BC102027 BC102028 AK098243 NM_172366	114871	-	NM_006228|PNOC|5368|prepronociceptin##U48263|PNOC|5368|prepronociceptin##AK289633|PNOC|5368|prepronociceptin##AY335948|PNOC|5368|prepronociceptin##BC034758|PNOC|5368|prepronociceptin##NM_018091|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK302140|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK296475|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK022626|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK295574|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK001284|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK293424|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK315985|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK316053|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AK298265|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##BC001240|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AL834273|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AM392633|ELP3|55140|elongation protein 3 homolog (S. cerevisiae)##AB075870|C8orf80|389643|chromosome 8 open reading frame 80##NM_001010906|C8orf80|389643|chromosome 8 open reading frame 80##BC001237|ZNF395|55893|zinc finger protein 395##AK002050|ZNF395|55893|zinc finger protein 395##AK023418|ZNF395|55893|zinc finger protein 395##NM_018660|ZNF395|55893|zinc finger protein 395##AB057659|ZNF395|55893|zinc finger protein 395##AB073627|ZNF395|55893|zinc finger protein 395##BC074986|FBXO16|157574|F-box protein 16##AF453435|FBXO16|157574|F-box protein 16##BC102026|FBXO16|157574|F-box protein 16##BC102027|FBXO16|157574|F-box protein 16##BC102028|FBXO16|157574|F-box protein 16##AK098243|ZNF395|55893|zinc finger protein 395##NM_172366|FBXO16|157574|F-box protein 16	0.999789	0.0	denovo_WM_7:1:0.419	denovo_WM_7:2:0.419
chrX	13505041	13505166	reg1012242.p1	3.777	+	TSC_hg19_v1_chrX_-_13397507 D28370	-107598	-	AK302365 NM_001135995	-166586	-	AB050195 TSC_hg19_v1_chrX_-_13338140 BC137186 BC137187	-166965	-	NM_001167890 NM_015507 AK075214 AK300236 AJ245671 AF193055 AF186084 AK300137 AK315018 AY358333 BC038587 AL117610 CU691592 DQ890938	82733	+	AK291271 AK315599 NM_152634 AK294465	166163	+	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	202138	+	AK302365|ATXN3L|92552|ataxin 3-like##NM_001135995|ATXN3L|92552|ataxin 3-like##AB050195|ATXN3L|92552|ataxin 3-like##BC137186|ATXN3L|92552|ataxin 3-like##BC137187|ATXN3L|92552|ataxin 3-like##NM_001167890|EGFL6|25975|EGF-like-domain, multiple 6##NM_015507|EGFL6|25975|EGF-like-domain, multiple 6##AK075214|EGFL6|25975|EGF-like-domain, multiple 6##AK300236|EGFL6|25975|EGF-like-domain, multiple 6##AJ245671|EGFL6|25975|EGF-like-domain, multiple 6##AF193055|EGFL6|25975|EGF-like-domain, multiple 6##AF186084|EGFL6|25975|EGF-like-domain, multiple 6##AK300137|EGFL6|25975|EGF-like-domain, multiple 6##AK315018|EGFL6|25975|EGF-like-domain, multiple 6##AY358333|EGFL6|25975|EGF-like-domain, multiple 6##BC038587|EGFL6|25975|EGF-like-domain, multiple 6##AL117610|EGFL6|25975|EGF-like-domain, multiple 6##DQ890938|EGFL6|25975|EGF-like-domain, multiple 6##AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family	0.980553	0.0	denovo_WM_7:24:0.486	denovo_WM_7:26:0.426
chr1	228327804	228327945	reg1016219.p1	3.776	+	NM_001242839 TSC_hg19_v1_chr1_+_228327928 NM_000858 NM_001159390 NM_001242840	-2	+	TSC_hg19_v1_chr1_-_228297001 BC052806 BX647745 AK056987 NM_181441 NM_181454 NM_181455 NM_181456 NM_181462 NM_181463 NM_181464 NM_181465	-30885	-	TSC_hg19_v1_chr1_-_228291059 AK123377	-36771	-	TSC_hg19_v1_chr1_+_228327979 AK303845	99	+	TSC_hg19_v1_chr1_+_228327982 BC006249	117	+	TSC_hg19_v1_chr1_+_228328003 BC091480	131	+	NM_001242839|GUK1|2987|guanylate kinase 1##NM_000858|GUK1|2987|guanylate kinase 1##NM_001159390|GUK1|2987|guanylate kinase 1##NM_001242840|GUK1|2987|guanylate kinase 1##BC052806|MRPL55|128308|mitochondrial ribosomal protein L55##BX647745|MRPL55|128308|mitochondrial ribosomal protein L55##AK056987|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181441|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181454|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181455|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181456|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181462|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181463|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181464|MRPL55|128308|mitochondrial ribosomal protein L55##NM_181465|MRPL55|128308|mitochondrial ribosomal protein L55##AK123377|C1orf35|79169|chromosome 1 open reading frame 35##AK303845|GUK1|2987|guanylate kinase 1##BC006249|GUK1|2987|guanylate kinase 1##BC091480|GUK1|2987|guanylate kinase 1	0.0	0.0	
chr13	106736080	106736260	reg1015593.p1	3.776	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	-617579	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	-617866	+	NM_000452 U10417	-3016975	-	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	451179	-	TSC_hg19_v1_chr13_-_107220486 BC050434 BC071587 AK304751 AK001016 AK303575 NM_018011	484315	-	NM_001080396	1783289	-	NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2##BC050434|ARGLU1|55082|arginine and glutamate rich 1##BC071587|ARGLU1|55082|arginine and glutamate rich 1##AK001016|ARGLU1|55082|arginine and glutamate rich 1##NM_018011|ARGLU1|55082|arginine and glutamate rich 1##NM_001080396|FAM155A|728215|family with sequence similarity 155, member A	0.0	0.065549	
chr16	85855110	85855256	reg1019622.p2	3.776	+	TSC_hg19_v1_chr16_+_85833325 BC021236 M21575	-21848	+	BC062437 X54802 TSC_hg19_v1_chr16_+_85833300 AK311847 BC039013 BC008704	-21878	+	NM_001861 TSC_hg19_v1_chr16_+_85833279 BC047869 U90915	-21950	+	TSC_hg19_v1_chr16_+_85932767 NM_002163 BC126247 M91196	77603	+	TSC_hg19_v1_chr16_-_86542463 AK091834	687281	-	TSC_hg19_v1_chr16_+_86544132 AK314167 NM_001451 BC089442 U13219	688973	+	BC021236|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##M21575|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC062437|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##X54802|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##AK311847|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC039013|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC008704|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##NM_001861|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##BC047869|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##U90915|COX4I1|1327|cytochrome c oxidase subunit IV isoform 1##NM_002163|IRF8|3394|interferon regulatory factor 8##BC126247|IRF8|3394|interferon regulatory factor 8##M91196|IRF8|3394|interferon regulatory factor 8##AK091834|LOC400550|400550|uncharacterized LOC400550##AK314167|FOXF1|2294|forkhead box F1##NM_001451|FOXF1|2294|forkhead box F1##BC089442|FOXF1|2294|forkhead box F1##U13219|FOXF1|2294|forkhead box F1	0.0	0.90926	CTCF.p2:-7:0.909
chr2	226535231	226535315	reg1015408.p1	3.776	+	NM_020864 BC131727 AB040919	-269628	+	TSC_hg19_v1_chr2_-_225907373 AB014594 NM_014689	-627925	-	TSC_hg19_v1_chr2_-_225811768 EU236710	-723519	-	EU831611 EU831698 TSC_hg19_v1_chr2_-_227663490 BC053895 NM_005544	1128206	-	TSC_hg19_v1_chr2_-_227664534 S62539	1129226	-	NM_001167608 NM_032276 TSC_hg19_v1_chr2_+_227700769 BC030293 AX775823 BC111056 AK074258 AX775825	1165457	+	NM_020864|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##BC131727|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB040919|NYAP2|57624|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2##AB014594|DOCK10|55619|dedicator of cytokinesis 10##NM_014689|DOCK10|55619|dedicator of cytokinesis 10##EU236710|DOCK10|55619|dedicator of cytokinesis 10##EU831611|IRS1|3667|insulin receptor substrate 1##EU831698|IRS1|3667|insulin receptor substrate 1##BC053895|IRS1|3667|insulin receptor substrate 1##NM_005544|IRS1|3667|insulin receptor substrate 1##S62539|IRS1|3667|insulin receptor substrate 1##NM_001167608|RHBDD1|84236|rhomboid domain containing 1##NM_032276|RHBDD1|84236|rhomboid domain containing 1##BC111056|RHBDD1|84236|rhomboid domain containing 1##AK074258|RHBDD1|84236|rhomboid domain containing 1	0.997851	0.026062	
chr6	83217546	83217726	reg1008434.p3	3.776	+	TSC_hg19_v1_chr6_+_83073996 AK074790 NM_001166392	-143659	+	TSC_hg19_v1_chr6_+_83073565 BC037161 AK074786	-144103	+	AK291170 NM_006670	-144714	+	TSC_hg19_v1_chr6_-_83775541 BC101512 BC101538 BC143617 BC036049 AB126062 NM_198920 BC053645 AK298205 BC057845	557889	-	TSC_hg19_v1_chr6_+_83777389 BX648667 NM_001199942 NM_015018 AK094766	559761	+	AF102265 AB032081 AF180371 TSC_hg19_v1_chr6_-_83902977 AK314512 AK225363 AK001365 AK023432 BC001258 NM_001199918 NM_001199919 NM_015599	685336	-	AK074790|TPBG|7162|trophoblast glycoprotein##NM_001166392|TPBG|7162|trophoblast glycoprotein##BC037161|TPBG|7162|trophoblast glycoprotein##AK074786|TPBG|7162|trophoblast glycoprotein##AK291170|TPBG|7162|trophoblast glycoprotein##NM_006670|TPBG|7162|trophoblast glycoprotein##BC101512|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC101538|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC143617|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC036049|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AB126062|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##NM_198920|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC053645|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##AK298205|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BC057845|UBE2CBP|90025|ubiquitin-conjugating enzyme E2C binding protein##BX648667|DOPEY1|23033|dopey family member 1##NM_001199942|DOPEY1|23033|dopey family member 1##NM_015018|DOPEY1|23033|dopey family member 1##AK094766|DOPEY1|23033|dopey family member 1##AF102265|PGM3|5238|phosphoglucomutase 3##AB032081|PGM3|5238|phosphoglucomutase 3##AF180371|PGM3|5238|phosphoglucomutase 3##AK314512|PGM3|5238|phosphoglucomutase 3##AK225363|PGM3|5238|phosphoglucomutase 3##AK001365|PGM3|5238|phosphoglucomutase 3##AK023432|PGM3|5238|phosphoglucomutase 3##BC001258|PGM3|5238|phosphoglucomutase 3##NM_001199918|PGM3|5238|phosphoglucomutase 3##NM_001199919|PGM3|5238|phosphoglucomutase 3##NM_015599|PGM3|5238|phosphoglucomutase 3	0.266735	0.0	denovo_WM_7:-98:0.267
chr6_cox_hap2	388889	388998	reg1012420.p2	3.776	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.996888	0.0	
chr7	7812165	7812345	reg1004056.p1	3.776	+	BC009868 NM_002947	-54018	-	TSC_hg19_v1_chr7_+_7680382 AK295253	-131882	+	BT007320 AB464142 TSC_hg19_v1_chr7_-_7680067 L07493 BC005264 AK311842	-132168	-	TSC_hg19_v1_chr7_+_8008451 NM_138426 BC050291	196178	+	NM_022307 U26591 TSC_hg19_v1_chr7_-_8301746	489461	-	U26592 AK292106 NM_001136020 TSC_hg19_v1_chr7_-_8301805	489536	-	BC009868|RPA3|6119|replication protein A3, 14kDa##NM_002947|RPA3|6119|replication protein A3, 14kDa##AK295253|LOC729852|729852|uncharacterized LOC729852##BT007320|RPA3|6119|replication protein A3, 14kDa##L07493|RPA3|6119|replication protein A3, 14kDa##BC005264|RPA3|6119|replication protein A3, 14kDa##AK311842|RPA3|6119|replication protein A3, 14kDa##NM_138426|GLCCI1|113263|glucocorticoid induced transcript 1##BC050291|GLCCI1|113263|glucocorticoid induced transcript 1##NM_022307|ICA1|3382|islet cell autoantigen 1, 69kDa##U26591|ICA1|3382|islet cell autoantigen 1, 69kDa##U26592|ICA1|3382|islet cell autoantigen 1, 69kDa##AK292106|ICA1|3382|islet cell autoantigen 1, 69kDa##NM_001136020|ICA1|3382|islet cell autoantigen 1, 69kDa	0.0	0.0	
chr1	154473910	154474007	reg1017431.p1	3.775	+	TSC_hg19_v1_chr1_+_154378074 AK293013 X58298 AK312730 BC035327 AB527867 HQ258435 HQ258616	-95884	+	AK223582 BC132684 BC132686 TSC_hg19_v1_chr1_+_154377856	-96106	+	NM_000565 NM_001206866 NM_181359 X12830 BC089410 TSC_hg19_v1_chr1_+_154377822	-96208	+	BC143765 BC117210 NM_001010846	566	-	BC044864 NM_001098475 NM_182499	736	+	BC107057 AY112698 TSC_hg19_v1_chr1_-_154531132 AY948200 NM_017582	57151	-	AK293013|IL6R|3570|interleukin 6 receptor##X58298|IL6R|3570|interleukin 6 receptor##AK312730|IL6R|3570|interleukin 6 receptor##BC035327|IL6R|3570|interleukin 6 receptor##HQ258435|IL6R|3570|interleukin 6 receptor##HQ258616|IL6R|3570|interleukin 6 receptor##AK223582|IL6R|3570|interleukin 6 receptor##BC132684|IL6R|3570|interleukin 6 receptor##BC132686|IL6R|3570|interleukin 6 receptor##NM_000565|IL6R|3570|interleukin 6 receptor##NM_001206866|IL6R|3570|interleukin 6 receptor##NM_181359|IL6R|3570|interleukin 6 receptor##X12830|IL6R|3570|interleukin 6 receptor##BC089410|IL6R|3570|interleukin 6 receptor##BC143765|SHE|126669|Src homology 2 domain containing E##BC117210|SHE|126669|Src homology 2 domain containing E##NM_001010846|SHE|126669|Src homology 2 domain containing E##BC044864|TDRD10|126668|tudor domain containing 10##NM_001098475|TDRD10|126668|tudor domain containing 10##NM_182499|TDRD10|126668|tudor domain containing 10##BC107057|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY112698|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##AY948200|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1##NM_017582|UBE2Q1|55585|ubiquitin-conjugating enzyme E2Q family member 1	0.0	0.0	
chr1	202688857	202688951	reg1015926.p2	3.775	+	BC100814 BC100815 BC100816 BC100817 AK090672 NM_177402 TSC_hg19_v1_chr1_-_202679575	-9405	-	AK094430 NM_001136504	-76324	-	AB588820 NM_001197131 TSC_hg19_v1_chr1_+_202509319	-179624	+	TSC_hg19_v1_chr1_-_202776401 AK122752	87540	-	TSC_hg19_v1_chr1_-_202777541 AJ132440	88623	-	AF087481 NM_006618 TSC_hg19_v1_chr1_-_202777550	88656	-	BC100814|SYT2|127833|synaptotagmin II##BC100815|SYT2|127833|synaptotagmin II##BC100816|SYT2|127833|synaptotagmin II##BC100817|SYT2|127833|synaptotagmin II##AK090672|SYT2|127833|synaptotagmin II##NM_177402|SYT2|127833|synaptotagmin II##AK094430|SYT2|127833|synaptotagmin II##NM_001136504|SYT2|127833|synaptotagmin II##AB588820|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##NM_001197131|PPP1R12B|4660|protein phosphatase 1, regulatory subunit 12B##AK122752|KDM5B|10765|lysine (K)-specific demethylase 5B##AJ132440|KDM5B|10765|lysine (K)-specific demethylase 5B##AF087481|KDM5B|10765|lysine (K)-specific demethylase 5B##NM_006618|KDM5B|10765|lysine (K)-specific demethylase 5B	0.0	0.655028	CTCF.p2:5:0.655
chr12	34300085	34300183	reg1019426.p1	3.775	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-124661	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-124748	+	AJ312278 NM_032834	-124919	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	4410491	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	4999249	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	5536865	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.998667	0.0	
chr12	38514340	38514458	reg1017086.p1	3.775	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4338926	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4339013	+	AJ312278 NM_032834	-4339184	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	196226	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	784984	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1322600	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.0	0.0	
chr17	65491029	65491139	reg1015282.p1	3.775	+	BC007905 NM_012417 NM_181671	-117161	+	AK290838 TSC_hg19_v1_chr17_+_65373587	-117496	+	TSC_hg19_v1_chr17_+_65373455 BC037261	-117675	+	TSC_hg19_v1_chr17_+_65714050 BC064404 AK023702 AK299483 NM_015462 AY598333	222966	+	TSC_hg19_v1_chr17_+_65821632 AK297281 BC037422 NM_004459 NM_182641 AB032251	330618	+	AK293224 TSC_hg19_v1_chr17_+_65822221	331133	+	BC007905|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_012417|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##NM_181671|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##AK290838|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC037261|PITPNC1|26207|phosphatidylinositol transfer protein, cytoplasmic 1##BC064404|NOL11|25926|nucleolar protein 11##AK023702|NOL11|25926|nucleolar protein 11##AK299483|NOL11|25926|nucleolar protein 11##NM_015462|NOL11|25926|nucleolar protein 11##AY598333|NOL11|25926|nucleolar protein 11##AK297281|BPTF|2186|bromodomain PHD finger transcription factor##BC037422|BPTF|2186|bromodomain PHD finger transcription factor##NM_004459|BPTF|2186|bromodomain PHD finger transcription factor##NM_182641|BPTF|2186|bromodomain PHD finger transcription factor##AB032251|BPTF|2186|bromodomain PHD finger transcription factor##AK293224|BPTF|2186|bromodomain PHD finger transcription factor	2.013981	0.0	denovo_WM_7:80:0.586	denovo_WM_7:98:0.237	denovo_WM_7:99:0.276
chr3	171517312	171517378	reg1009842.p2	3.775	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-339274	-	NM_000340	-772578	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-772812	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	10910	-	NM_001164436 AK026825	43803	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	240070	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	0.0	0.0	
chr5	39640740	39640816	reg1018529.p1	3.775	+	TSC_hg19_v1_chr5_-_39425304 NM_001244871 NM_001343	-215461	-	TSC_hg19_v1_chr5_-_39425082 AK314381	-215714	-	BC003064 U53446 TSC_hg19_v1_chr5_-_39424971	-215827	-	TSC_hg19_v1_chr5_+_40680033 BC027934 NM_000958	1039249	+	TSC_hg19_v1_chr5_+_40680042 L25124	1039266	+	AF023244 BC036536 BC015701 AK312560 AK307131 AK303119 NM_012382	1115262	-	NM_001244871|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##NM_001343|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##AK314381|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC003064|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##U53446|DAB2|1601|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)##BC027934|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##NM_000958|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##L25124|PTGER4|5734|prostaglandin E receptor 4 (subtype EP4)##AF023244|TTC33|23548|tetratricopeptide repeat domain 33##BC036536|TTC33|23548|tetratricopeptide repeat domain 33##BC015701|TTC33|23548|tetratricopeptide repeat domain 33##AK312560|TTC33|23548|tetratricopeptide repeat domain 33##AK307131|TTC33|23548|tetratricopeptide repeat domain 33##AK303119|TTC33|23548|tetratricopeptide repeat domain 33##NM_012382|TTC33|23548|tetratricopeptide repeat domain 33	0.99694	0.0	denovo_WM_7:-45:0.841
chrX	65207925	65208059	reg1012233.p1	3.775	+	TSC_hg19_v1_chrX_+_64887602 AK309986 M69066 AF295356 DQ892653 DQ895892	-320344	+	TSC_hg19_v1_chrX_+_64887542 BC001112 BC011827 BC017293	-320445	+	NM_002444 TSC_hg19_v1_chrX_+_64887520	-320475	+	TSC_hg19_v1_chrX_+_65235302 DQ680071 DQ680072	27299	+	DQ891770 DQ894953 BC010525 AJ132502 AK293215 AK298389 AK075153 AK297050 AK301417 AK075171 NM_001100431 NM_001184830 NM_001184831 NM_007268	51910	-	NM_138737 TSC_hg19_v1_chrX_+_65382512	174483	+	AK309986|MSN|4478|moesin##M69066|MSN|4478|moesin##DQ892653|MSN|4478|moesin##DQ895892|MSN|4478|moesin##BC001112|MSN|4478|moesin##BC011827|MSN|4478|moesin##BC017293|MSN|4478|moesin##NM_002444|MSN|4478|moesin##DQ891770|VSIG4|11326|V-set and immunoglobulin domain containing 4##DQ894953|VSIG4|11326|V-set and immunoglobulin domain containing 4##BC010525|VSIG4|11326|V-set and immunoglobulin domain containing 4##AJ132502|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK293215|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK298389|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075153|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK297050|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK301417|VSIG4|11326|V-set and immunoglobulin domain containing 4##AK075171|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001100431|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184830|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_001184831|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_007268|VSIG4|11326|V-set and immunoglobulin domain containing 4##NM_138737|HEPH|9843|hephaestin	1.978292	0.0	denovo_WM_7:71:0.212	denovo_WM_7:72:0.569	denovo_WM_7:73:0.210	denovo_WM_7:87:0.633	denovo_WM_7:88:0.251
chr11	130170478	130170658	reg1011625.p1	3.774	+	TSC_hg19_v1_chr11_+_130029782 AF118224 AF133086 AF057145 AB030036 DQ891626 DQ894442 AB528443 CU688892	-140745	+	TSC_hg19_v1_chr11_+_130029713 BC030532	-140827	+	AK314173 TSC_hg19_v1_chr11_+_130029706	-140864	+	TSC_hg19_v1_chr11_-_130184330 AF161548	13763	-	TSC_hg19_v1_chr11_+_130184331 AK091840 AX747213	13804	+	TSC_hg19_v1_chr11_-_130184509 AK314701 BC030580 BC049375 BC071729 NM_014155	13964	-	AF118224|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AF133086|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AF057145|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AB030036|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##DQ891626|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##DQ894442|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##BC030532|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AK314173|ST14|6768|suppression of tumorigenicity 14 (colon carcinoma)##AF161548|ZBTB44|29068|zinc finger and BTB domain containing 44##AK091840|FLJ34521|646383|uncharacterized LOC646383##AK314701|ZBTB44|29068|zinc finger and BTB domain containing 44##BC030580|ZBTB44|29068|zinc finger and BTB domain containing 44##BC049375|ZBTB44|29068|zinc finger and BTB domain containing 44##BC071729|ZBTB44|29068|zinc finger and BTB domain containing 44##NM_014155|ZBTB44|29068|zinc finger and BTB domain containing 44	0.0	0.0	
chr11	2440996	2441075	reg1006947.p2	3.774	+	AF125568 NM_005706	-17513	+	TSC_hg19_v1_chr11_+_2421990 BC006091	-19039	+	TSC_hg19_v1_chr11_+_2398543 NM_004356 BC093047 M33680	-42488	+	AJ270996 BC093787 BC093789 BC143351 BC143353 AF177473 NM_014555	3222	-	TSC_hg19_v1_chr11_+_2466237 AF000571 NM_000218 EF010934 AB464057 AY114213 U86146	25214	+	BC007733 TSC_hg19_v1_chr11_-_2560881	119812	-	AF125568|TSSC4|10078|tumor suppressing subtransferable candidate 4##NM_005706|TSSC4|10078|tumor suppressing subtransferable candidate 4##BC006091|TSSC4|10078|tumor suppressing subtransferable candidate 4##NM_004356|CD81|975|CD81 molecule##BC093047|CD81|975|CD81 molecule##M33680|CD81|975|CD81 molecule##AJ270996|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC093787|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC093789|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC143351|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##BC143353|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##AF177473|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##NM_014555|TRPM5|29850|transient receptor potential cation channel, subfamily M, member 5##AF000571|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##NM_000218|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##EF010934|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##AY114213|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1##U86146|KCNQ1|3784|potassium voltage-gated channel, KQT-like subfamily, member 1	0.0	0.987804	CTCF.p2:26:0.988
chr12	53945854	53945989	reg1018153.p1	3.774	+	BC104234 BC104235 AF005271 NM_003717	-44525	-	NM_134324	-50545	+	TSC_hg19_v1_chr12_+_53895135 AK309569 U08998 AK290737 AK293728 AB464283 BT007140 DQ893549 DQ893931	-50793	+	AB463398 X57197 NM_001130059	48872	-	TSC_hg19_v1_chr12_-_54019764 BC042363 NM_001206683	73814	-	TSC_hg19_v1_chr12_-_54020167 BC136302 X52943 AK298853 AK313507 BC032433 BC140006 NM_001130060 NM_001206682 NM_006856	74232	-	BC104234|NPFF|8620|neuropeptide FF-amide peptide precursor##BC104235|NPFF|8620|neuropeptide FF-amide peptide precursor##AF005271|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_003717|NPFF|8620|neuropeptide FF-amide peptide precursor##NM_134324|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK309569|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##U08998|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##AK290737|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##BT007140|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893549|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##DQ893931|TARBP2|6895|TAR (HIV-1) RNA binding protein 2##X57197|ATF7|11016|activating transcription factor 7##NM_001130059|ATF7|11016|activating transcription factor 7##BC042363|ATF7|11016|activating transcription factor 7##NM_001206683|ATF7|11016|activating transcription factor 7##BC136302|ATF7|11016|activating transcription factor 7##X52943|ATF7|11016|activating transcription factor 7##AK298853|ATF7|11016|activating transcription factor 7##AK313507|ATF7|11016|activating transcription factor 7##BC032433|ATF7|11016|activating transcription factor 7##BC140006|ATF7|11016|activating transcription factor 7##NM_001130060|ATF7|11016|activating transcription factor 7##NM_001206682|ATF7|11016|activating transcription factor 7##NM_006856|ATF7|11016|activating transcription factor 7	0.0	0.0	
chr17	41739451	41739631	reg1004584.p1	3.774	+	NM_001040002 AK291139	-266	-	AB527749 CU686836 EU446636 BC069474 BC069506 NM_004527 NM_013999 U10492 U10493	-626	-	TSC_hg19_v1_chr17_-_41623674 AK315961 U18018 NM_001079675	-115815	-	BC101086 BC101087 BC101088 BC101089 AF331844 AF326739 NM_025237	96602	-	AK226170 TSC_hg19_v1_chr17_-_41856314 AB451424 BT019522 CU678116 DQ893122 DQ896399 BC035701 AK129822 L05147 BC002682 NM_004090	116743	-	BC054872 BC070324 NM_001136483 BC146971 AK125817	118273	+	NM_001040002|MEOX1|4222|mesenchyme homeobox 1##AK291139|MEOX1|4222|mesenchyme homeobox 1##EU446636|MEOX1|4222|mesenchyme homeobox 1##BC069474|MEOX1|4222|mesenchyme homeobox 1##BC069506|MEOX1|4222|mesenchyme homeobox 1##NM_004527|MEOX1|4222|mesenchyme homeobox 1##NM_013999|MEOX1|4222|mesenchyme homeobox 1##U10492|MEOX1|4222|mesenchyme homeobox 1##U10493|MEOX1|4222|mesenchyme homeobox 1##AK315961|ETV4|2118|ets variant 4##U18018|ETV4|2118|ets variant 4##NM_001079675|ETV4|2118|ets variant 4##BC101086|SOST|50964|sclerostin##BC101087|SOST|50964|sclerostin##BC101088|SOST|50964|sclerostin##BC101089|SOST|50964|sclerostin##AF331844|SOST|50964|sclerostin##AF326739|SOST|50964|sclerostin##NM_025237|SOST|50964|sclerostin##AK226170|DUSP3|1845|dual specificity phosphatase 3##AB451424|DUSP3|1845|dual specificity phosphatase 3##BT019522|DUSP3|1845|dual specificity phosphatase 3##DQ893122|DUSP3|1845|dual specificity phosphatase 3##DQ896399|DUSP3|1845|dual specificity phosphatase 3##BC035701|DUSP3|1845|dual specificity phosphatase 3##AK129822|DUSP3|1845|dual specificity phosphatase 3##L05147|DUSP3|1845|dual specificity phosphatase 3##BC002682|DUSP3|1845|dual specificity phosphatase 3##NM_004090|DUSP3|1845|dual specificity phosphatase 3##BC054872|C17orf105|284067|chromosome 17 open reading frame 105##BC070324|C17orf105|284067|chromosome 17 open reading frame 105##NM_001136483|C17orf105|284067|chromosome 17 open reading frame 105##BC146971|C17orf105|284067|chromosome 17 open reading frame 105##AK125817|C17orf105|284067|chromosome 17 open reading frame 105	0.697816	0.0	denovo_WM_7:-29:0.513
chr18	43589264	43589385	reg1014793.p1	3.774	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	-42046	-	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-183700	+	NM_001146037	-282407	+	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	62884	-	TSC_hg19_v1_chr18_-_43668143 AK129804	78853	-	TSC_hg19_v1_chr18_-_43669608 BC003119	80275	-	AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC003119|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	1.99163	0.0	denovo_WM_7:11:0.927	denovo_WM_7:26:0.917
chr20	3890668	3890767	reg1001188.p1	3.774	+	NM_153640 BC107724 BC065019	-20228	+	TSC_hg19_v1_chr20_+_3870042 AK310190 AK097796 BC142976 BC009421	-20661	+	TSC_hg19_v1_chr20_-_3869721 BC005095 BC012193	-20999	-	AL096778 NM_007219 BC039584 TSC_hg19_v1_chr20_-_3996221 BC000213 BC003141 NM_001134337 NM_001134338 BC032738	105448	-	TSC_hg19_v1_chr20_+_4129438 NM_175839 NM_175840 NM_175841 NM_175842	238718	+	TSC_hg19_v1_chr20_+_4129505 AK293485 BC000669 AF519179 AY033889 AY033890 AY033891 EF032141	238806	+	NM_153640|PANK2|80025|pantothenate kinase 2##BC107724|PANK2|80025|pantothenate kinase 2##BC065019|PANK2|80025|pantothenate kinase 2##AK310190|PANK2|80025|pantothenate kinase 2##AK097796|PANK2|80025|pantothenate kinase 2##BC142976|PANK2|80025|pantothenate kinase 2##BC009421|PANK2|80025|pantothenate kinase 2##AL096778|RNF24|11237|ring finger protein 24##NM_007219|RNF24|11237|ring finger protein 24##BC039584|RNF24|11237|ring finger protein 24##BC000213|RNF24|11237|ring finger protein 24##NM_001134337|RNF24|11237|ring finger protein 24##NM_001134338|RNF24|11237|ring finger protein 24##NM_175839|SMOX|54498|spermine oxidase##NM_175840|SMOX|54498|spermine oxidase##NM_175841|SMOX|54498|spermine oxidase##NM_175842|SMOX|54498|spermine oxidase##AK293485|SMOX|54498|spermine oxidase##BC000669|SMOX|54498|spermine oxidase##AF519179|SMOX|54498|spermine oxidase##AY033889|SMOX|54498|spermine oxidase##AY033890|SMOX|54498|spermine oxidase##AY033891|SMOX|54498|spermine oxidase##EF032141|SMOX|54498|spermine oxidase	0.0	0.0	
chr3	73022047	73022140	reg1005279.p1	3.774	+	TSC_hg19_v1_chr3_+_72937356 NM_001080393	-84817	+	TSC_hg19_v1_chr3_-_72897587 BC017204 BC025270 BC032671 AK001401 NM_018130	-124501	-	BC017274 TSC_hg19_v1_chr3_-_72897575	-124518	-	TSC_hg19_v1_chr3_+_73045961 AK289901 BC100281	23864	+	TSC_hg19_v1_chr3_+_73045984 BC110889	23898	+	TSC_hg19_v1_chr3_+_73046081 AF327345 NM_174907 BC128136 BC128137	24027	+	NM_001080393|GXYLT2|727936|glucoside xylosyltransferase 2##BC017204|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC025270|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC032671|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK001401|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##NM_018130|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##BC017274|SHQ1|55164|SHQ1 homolog (S. cerevisiae)##AK289901|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC100281|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##AF327345|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##NM_174907|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128136|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128137|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2	0.010301	0.0	
chr4	114247222	114247369	reg1015928.p2	3.774	+	TSC_hg19_v1_chr4_+_114214102 AK294720	-33176	+	NM_001148 NM_020977 TSC_hg19_v1_chr4_+_113970812 AK299767 AK307601 X56958 AB385222 Z26634	-276461	+	TSC_hg19_v1_chr4_+_113739259 AK095596 NM_001127493 AK299815 BX537758	-507994	+	AB384909 AF071569 AY987011 DQ895255 EU176241 BC032784 TSC_hg19_v1_chr4_-_114682321	434986	-	TSC_hg19_v1_chr4_-_114682341 AK294517	435061	-	BC022558 TSC_hg19_v1_chr4_-_114682567	435271	-	AK294720|ANK2|287|ankyrin 2, neuronal##NM_001148|ANK2|287|ankyrin 2, neuronal##NM_020977|ANK2|287|ankyrin 2, neuronal##AK299767|ANK2|287|ankyrin 2, neuronal##AK307601|ANK2|287|ankyrin 2, neuronal##X56958|ANK2|287|ankyrin 2, neuronal##Z26634|ANK2|287|ankyrin 2, neuronal##AK095596|ANK2|287|ankyrin 2, neuronal##NM_001127493|ANK2|287|ankyrin 2, neuronal##AK299815|ANK2|287|ankyrin 2, neuronal##BX537758|ANK2|287|ankyrin 2, neuronal##AF071569|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AY987011|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##DQ895255|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##EU176241|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##BC032784|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##AK294517|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta##BC022558|CAMK2D|817|calcium/calmodulin-dependent protein kinase II delta	0.0	0.0	
chr6	159459293	159459417	reg1016896.p2	3.774	+	TSC_hg19_v1_chr6_-_159421220 BC050604 NM_031924 AK057931 BC011590	-38134	-	AF353618 AK057655 TSC_hg19_v1_chr6_-_159420825	-38536	-	TSC_hg19_v1_chr6_-_159420766 BC035675	-38586	-	TSC_hg19_v1_chr6_-_159466024 BC111731 AK097090 BC015859 AL832662 AF385429 AF385430 NM_054114 NM_138810 NM_152133	6746	-	DQ009660 NM_032532 TSC_hg19_v1_chr6_+_159590431	131075	+	AY280720 AY280721 AY280719 BT006967 AB528757 DQ890587 DQ893752 AM392836 X07834 AK313082 BC012423 BC035422 X15132 X59445 BC016934 TSC_hg19_v1_chr6_-_160114277 Y00472 AK296809 AK304766 AL050388 X14322 M36693 Y00985	654895	-	BC050604|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##NM_031924|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057931|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC011590|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AF353618|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##AK057655|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC035675|RSPH3|83861|radial spoke 3 homolog (Chlamydomonas)##BC111731|TAGAP|117289|T-cell activation RhoGTPase activating protein##AK097090|TAGAP|117289|T-cell activation RhoGTPase activating protein##BC015859|TAGAP|117289|T-cell activation RhoGTPase activating protein##AL832662|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385429|TAGAP|117289|T-cell activation RhoGTPase activating protein##AF385430|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_054114|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_138810|TAGAP|117289|T-cell activation RhoGTPase activating protein##NM_152133|TAGAP|117289|T-cell activation RhoGTPase activating protein##DQ009660|FNDC1|84624|fibronectin type III domain containing 1##NM_032532|FNDC1|84624|fibronectin type III domain containing 1##AY280720|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280721|SOD2|6648|superoxide dismutase 2, mitochondrial##AY280719|SOD2|6648|superoxide dismutase 2, mitochondrial##BT006967|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ890587|SOD2|6648|superoxide dismutase 2, mitochondrial##DQ893752|SOD2|6648|superoxide dismutase 2, mitochondrial##AM392836|SOD2|6648|superoxide dismutase 2, mitochondrial##X07834|SOD2|6648|superoxide dismutase 2, mitochondrial##AK313082|SOD2|6648|superoxide dismutase 2, mitochondrial##BC012423|SOD2|6648|superoxide dismutase 2, mitochondrial##BC035422|SOD2|6648|superoxide dismutase 2, mitochondrial##X15132|SOD2|6648|superoxide dismutase 2, mitochondrial##X59445|SOD2|6648|superoxide dismutase 2, mitochondrial##BC016934|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00472|SOD2|6648|superoxide dismutase 2, mitochondrial##AK296809|SOD2|6648|superoxide dismutase 2, mitochondrial##AK304766|SOD2|6648|superoxide dismutase 2, mitochondrial##AL050388|SOD2|6648|superoxide dismutase 2, mitochondrial##X14322|SOD2|6648|superoxide dismutase 2, mitochondrial##M36693|SOD2|6648|superoxide dismutase 2, mitochondrial##Y00985|SOD2|6648|superoxide dismutase 2, mitochondrial	1.993534	0.0	denovo_WM_7:77:0.981
chr8	42948568	42948660	reg1015819.p2	3.774	+	TSC_hg19_v1_chr8_+_42911465 NM_002027 BC037295 AK292121 L00634 BC084566 L10413 AB590505 BT009854 BC017029	-37146	+	TSC_hg19_v1_chr8_+_42752142 BC056146	-196468	+	TSC_hg19_v1_chr8_+_42752090 AK309224	-196526	+	TSC_hg19_v1_chr8_+_42948657 NM_032237	39	+	AK027009 TSC_hg19_v1_chr8_+_42948660	53	+	TSC_hg19_v1_chr8_+_42995606 NM_152419	46966	+	NM_002027|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC037295|FNTA|2339|farnesyltransferase, CAAX box, alpha##AK292121|FNTA|2339|farnesyltransferase, CAAX box, alpha##L00634|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC084566|FNTA|2339|farnesyltransferase, CAAX box, alpha##L10413|FNTA|2339|farnesyltransferase, CAAX box, alpha##BT009854|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC017029|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC056146|HOOK3|84376|hook homolog 3 (Drosophila)##AK309224|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032237|SGK196|84197|protein kinase-like protein SgK196##NM_152419|HGSNAT|138050|heparan-alpha-glucosaminide N-acetyltransferase	0.0	0.81917	CTCF.p2:-20:0.819
chr9	126849293	126849414	reg1011923.p2	3.774	+	TSC_hg19_v1_chr9_+_126774046 BC034458	-75282	+	TSC_hg19_v1_chr9_+_126773887 AK027597 NM_004789	-75470	+	CU691746 TSC_hg19_v1_chr9_-_126692267 BC028061 BC039703 AK295710 AK024782 AK225104 NM_020946 NM_024820 BC009616	-157042	-	TSC_hg19_v1_chr9_+_127020232 NM_001166167 BC000101 NM_001145001 NM_014397	170657	+	BC004174 BC004209 TSC_hg19_v1_chr9_+_127020244 BC012761	170892	+	TSC_hg19_v1_chr9_+_127020255 AB026289	170911	+	BC034458|LHX2|9355|LIM homeobox 2##AK027597|LHX2|9355|LIM homeobox 2##NM_004789|LHX2|9355|LIM homeobox 2##BC028061|DENND1A|57706|DENN/MADD domain containing 1A##BC039703|DENND1A|57706|DENN/MADD domain containing 1A##AK295710|DENND1A|57706|DENN/MADD domain containing 1A##AK024782|DENND1A|57706|DENN/MADD domain containing 1A##AK225104|DENND1A|57706|DENN/MADD domain containing 1A##NM_020946|DENND1A|57706|DENN/MADD domain containing 1A##NM_024820|DENND1A|57706|DENN/MADD domain containing 1A##BC009616|DENND1A|57706|DENN/MADD domain containing 1A##NM_001166167|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC000101|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_001145001|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##NM_014397|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004174|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC004209|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##BC012761|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6##AB026289|NEK6|10783|NIMA (never in mitosis gene a)-related kinase 6	0.996168	0.0	denovo_WM_7:0:0.249	denovo_WM_7:0:0.249	denovo_WM_7:-1:0.249	denovo_WM_7:-2:0.249
chr1	153787605	153787751	reg1013764.p2	3.773	+	BC003041 BC009916 NM_024330 AK075377 TSC_hg19_v1_chr1_+_153747897 AK123997 AY358409 AK074134 DQ893429 DQ895951 AK027499 BC029792	-39812	+	TSC_hg19_v1_chr1_+_153700548 BX640950 CR749376 CR627233 BC116458 AK290025 CR749212 BX640786 NM_023015	-87125	+	TSC_hg19_v1_chr1_+_153651222 BC063304 AK025024 NM_000906 X15357	-136382	+	AK094665 NM_020699 TSC_hg19_v1_chr1_-_153895452	107773	-	TSC_hg19_v1_chr1_-_153919148 AB007945 NM_014856	131468	-	AY726597 AK096382 BC053562 TSC_hg19_v1_chr1_-_153931074 AF289574	143315	-	BC003041|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC009916|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##NM_024330|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK075377|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK123997|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AY358409|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK074134|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ893429|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##DQ895951|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##AK027499|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BC029792|SLC27A3|11000|solute carrier family 27 (fatty acid transporter), member 3##BX640950|INTS3|65123|integrator complex subunit 3##CR749376|INTS3|65123|integrator complex subunit 3##CR627233|INTS3|65123|integrator complex subunit 3##BC116458|INTS3|65123|integrator complex subunit 3##AK290025|INTS3|65123|integrator complex subunit 3##CR749212|INTS3|65123|integrator complex subunit 3##BX640786|INTS3|65123|integrator complex subunit 3##NM_023015|INTS3|65123|integrator complex subunit 3##BC063304|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK025024|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##NM_000906|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##X15357|NPR1|4881|natriuretic peptide receptor A/guanylate cyclase A (atrionatriuretic peptide receptor A)##AK094665|GATAD2B|57459|GATA zinc finger domain containing 2B##NM_020699|GATAD2B|57459|GATA zinc finger domain containing 2B##AB007945|DENND4B|9909|DENN/MADD domain containing 4B##NM_014856|DENND4B|9909|DENN/MADD domain containing 4B##AY726597|CRTC2|200186|CREB regulated transcription coactivator 2##AK096382|CRTC2|200186|CREB regulated transcription coactivator 2##BC053562|CRTC2|200186|CREB regulated transcription coactivator 2##AF289574|CRTC2|200186|CREB regulated transcription coactivator 2	2.967638	0.0	denovo_WM_7:82:0.276	denovo_WM_7:86:0.210	denovo_WM_7:-96:0.657	denovo_WM_7:-97:0.329	denovo_WM_7:99:0.484	denovo_WM_7:103:0.369
chr1	200851193	200851340	reg1011212.p2	3.773	+	BC126386 BC126388 AK315339 NM_005298	-9143	+	TSC_hg19_v1_chr1_+_200708732 AK095640 NM_203459	-142595	+	TSC_hg19_v1_chr1_-_200639091 BC041801 NM_001031725	-212158	-	TSC_hg19_v1_chr1_+_200860668 NM_018265 AK001583 AK001763 BC106877	9380	+	AK316510 NM_001142569 TSC_hg19_v1_chr1_+_200864027 AK303885	12731	+	AM177180 AB527174 BC137281 BC144557 TSC_hg19_v1_chr1_-_200992598	141288	-	BC126386|GPR25|2848|G protein-coupled receptor 25##BC126388|GPR25|2848|G protein-coupled receptor 25##AK315339|GPR25|2848|G protein-coupled receptor 25##NM_005298|GPR25|2848|G protein-coupled receptor 25##AK095640|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##NM_203459|CAMSAP2|23271|calmodulin regulated spectrin-associated protein family, member 2##BC041801|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_001031725|DDX59|83479|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59##NM_018265|C1orf106|55765|chromosome 1 open reading frame 106##AK001583|C1orf106|55765|chromosome 1 open reading frame 106##AK001763|C1orf106|55765|chromosome 1 open reading frame 106##BC106877|C1orf106|55765|chromosome 1 open reading frame 106##AK316510|C1orf106|55765|chromosome 1 open reading frame 106##NM_001142569|C1orf106|55765|chromosome 1 open reading frame 106##AK303885|C1orf106|55765|chromosome 1 open reading frame 106##AM177180|KIF21B|23046|kinesin family member 21B##BC137281|KIF21B|23046|kinesin family member 21B##BC144557|KIF21B|23046|kinesin family member 21B	0.0	0.0	
chr1	39337005	39337132	reg1017031.p2	3.773	+	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	-11682	-	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	-824619	-	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-858638	+	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	1948	-	AK312811 BC051675 AK123051 NM_030772	10209	-	BC065247 NM_017821 BC013103	70391	-	AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein##AK312811|GJA9|81025|gap junction protein, alpha 9, 59kDa##BC051675|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##AK123051|GJA9-MYCBP|100527950|GJA9-MYCBP readthrough##NM_030772|GJA9|81025|gap junction protein, alpha 9, 59kDa##NM_017821|RHBDL2|54933|rhomboid, veinlet-like 2 (Drosophila)##BC013103|RHBDL2|54933|rhomboid, veinlet-like 2 (Drosophila)	0.99947	0.0	
chr19	13053318	13053463	reg1011336.p1	3.773	+	AF087986 TSC_hg19_v1_chr19_+_13050366	-3072	+	AY047586 TSC_hg19_v1_chr19_+_13049447 BC002500 AB385014 AB451408 BT007448 CR457070 AK223060	-3908	+	TSC_hg19_v1_chr19_+_13049428 BC007911 BC020493	-3961	+	TSC_hg19_v1_chr19_+_13056655 NM_005053	3241	+	TSC_hg19_v1_chr19_+_13056662 AK293219	3272	+	TSC_hg19_v1_chr19_+_13056675 AK289908 BC088364 BC014026 AB209713 D21235 AB463210 L37720	3341	+	AF087986|CALR|811|calreticulin##AY047586|CALR|811|calreticulin##BC002500|CALR|811|calreticulin##AB451408|CALR|811|calreticulin##BT007448|CALR|811|calreticulin##CR457070|CALR|811|calreticulin##AK223060|CALR|811|calreticulin##BC007911|CALR|811|calreticulin##BC020493|CALR|811|calreticulin##NM_005053|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AK293219|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AK289908|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC088364|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##BC014026|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##AB209713|RAD23A|5886|RAD23 homolog A (S. cerevisiae)##D21235|RAD23A|5886|RAD23 homolog A (S. cerevisiae)	0.993262	0.0	
chr19	21203432	21203542	reg1014046.p1	3.773	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-6	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-97401	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-244378	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	61516	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	121369	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	308706	-	AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708	0.0	0.0	
chr19	21230875	21230956	reg1014461.p2	3.773	+	AK290475 NM_001172671 NM_025189 TSC_hg19_v1_chr19_+_21203432 AK023721 AX721141 AY269787 BC111776	-27434	+	NM_003429 BC068066 TSC_hg19_v1_chr19_+_21106090 U35376 M61866 BC008688	-124829	+	BC067843 TSC_hg19_v1_chr19_+_20959109	-271806	+	NM_182515 AL834415 TSC_hg19_v1_chr19_+_21264973 AK056006 BC022527 BC037782 BC050468 BC064985	34088	+	BX647597 TSC_hg19_v1_chr19_+_21324836 AK308127 NM_133473 AK293072 AB075849 BC065374 BC040506	93941	+	TSC_hg19_v1_chr19_-_21512183 AK128184 AK131527 NM_021269 AK095062 BX647526	281278	-	AK290475|ZNF430|80264|zinc finger protein 430##NM_001172671|ZNF430|80264|zinc finger protein 430##NM_025189|ZNF430|80264|zinc finger protein 430##AK023721|ZNF430|80264|zinc finger protein 430##AY269787|ZNF430|80264|zinc finger protein 430##BC111776|ZNF430|80264|zinc finger protein 430##NM_003429|ZNF85|7639|zinc finger protein 85##BC068066|ZNF85|7639|zinc finger protein 85##U35376|ZNF85|7639|zinc finger protein 85##M61866|ZNF85|7639|zinc finger protein 85##BC008688|ZNF85|7639|zinc finger protein 85##NM_182515|ZNF714|148206|zinc finger protein 714##AK056006|ZNF714|148206|zinc finger protein 714##BC022527|ZNF714|148206|zinc finger protein 714##BC037782|ZNF714|148206|zinc finger protein 714##BC050468|ZNF714|148206|zinc finger protein 714##BC064985|ZNF714|148206|zinc finger protein 714##BX647597|ZNF431|170959|zinc finger protein 431##AK308127|ZNF431|170959|zinc finger protein 431##NM_133473|ZNF431|170959|zinc finger protein 431##AK293072|ZNF431|170959|zinc finger protein 431##AB075849|ZNF431|170959|zinc finger protein 431##BC040506|ZNF431|170959|zinc finger protein 431##AK128184|ZNF708|7562|zinc finger protein 708##AK131527|ZNF708|7562|zinc finger protein 708##NM_021269|ZNF708|7562|zinc finger protein 708##BX647526|ZNF708|7562|zinc finger protein 708	2.013416	0.0	denovo_WM_7:62:0.415	denovo_WM_7:63:0.284	denovo_WM_7:78:0.291	denovo_WM_7:79:0.423
chr20	10539436	10539577	reg1006348.p1	3.773	+	TSC_hg19_v1_chr20_+_10415968 BC020787 BC026094 NM_001009608	-123530	+	TSC_hg19_v1_chr20_-_10414847 AF275813 BC028973 AK025741 AL157427 AK291925 AF221992 NM_170784 AK296439	-124667	-	AF221993 NM_018848	-126937	-	U77720 HQ258535 AK312722 TSC_hg19_v1_chr20_-_10654265	114698	-	BC126205 BC126207 AF028593 U61276 U73936 BC098393 TSC_hg19_v1_chr20_-_10654648 BC028007 AF003837 NM_000214	115063	-	TSC_hg19_v1_chr20_+_11871480 AK299281 NM_181443	1331943	+	BC020787|C20orf94|128710|chromosome 20 open reading frame 94##BC026094|C20orf94|128710|chromosome 20 open reading frame 94##NM_001009608|C20orf94|128710|chromosome 20 open reading frame 94##AF275813|MKKS|8195|McKusick-Kaufman syndrome##BC028973|MKKS|8195|McKusick-Kaufman syndrome##AK025741|MKKS|8195|McKusick-Kaufman syndrome##AL157427|MKKS|8195|McKusick-Kaufman syndrome##AK291925|MKKS|8195|McKusick-Kaufman syndrome##AF221992|MKKS|8195|McKusick-Kaufman syndrome##NM_170784|MKKS|8195|McKusick-Kaufman syndrome##AK296439|MKKS|8195|McKusick-Kaufman syndrome##AF221993|MKKS|8195|McKusick-Kaufman syndrome##NM_018848|MKKS|8195|McKusick-Kaufman syndrome##U77720|JAG1|182|jagged 1##HQ258535|JAG1|182|jagged 1##AK312722|JAG1|182|jagged 1##BC126205|JAG1|182|jagged 1##BC126207|JAG1|182|jagged 1##AF028593|JAG1|182|jagged 1##U61276|JAG1|182|jagged 1##U73936|JAG1|182|jagged 1##BC098393|JAG1|182|jagged 1##BC028007|JAG1|182|jagged 1##AF003837|JAG1|182|jagged 1##NM_000214|JAG1|182|jagged 1##AK299281|BTBD3|22903|BTB (POZ) domain containing 3##NM_181443|BTBD3|22903|BTB (POZ) domain containing 3	0.0	0.0	
chr2	98578165	98578319	reg1017070.p2	3.773	+	AK025852 TSC_hg19_v1_chr2_-_98408976	-169320	-	AB083211 NM_207519	-227374	+	L05148 NM_001079 AK303341 AK310637 AK310628 BC053878	-248200	+	AK297450 TSC_hg19_v1_chr2_-_98612338 NM_015348	33944	-	TSC_hg19_v1_chr2_-_98612395 AK098792	34161	-	NM_144992 AL832761 BC095480 TSC_hg19_v1_chr2_+_98703652 AK292397 AK057248 AL832635 BC150653 AK302390 BC026091	125404	+	AK025852|TMEM131|23505|transmembrane protein 131##AB083211|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_207519|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##L05148|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##NM_001079|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK303341|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310637|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK310628|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##BC053878|ZAP70|7535|zeta-chain (TCR) associated protein kinase 70kDa##AK297450|TMEM131|23505|transmembrane protein 131##NM_015348|TMEM131|23505|transmembrane protein 131##AK098792|TMEM131|23505|transmembrane protein 131##NM_144992|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832761|VWA3B|200403|von Willebrand factor A domain containing 3B##BC095480|VWA3B|200403|von Willebrand factor A domain containing 3B##AK292397|VWA3B|200403|von Willebrand factor A domain containing 3B##AK057248|VWA3B|200403|von Willebrand factor A domain containing 3B##AL832635|VWA3B|200403|von Willebrand factor A domain containing 3B##BC150653|VWA3B|200403|von Willebrand factor A domain containing 3B##AK302390|VWA3B|200403|von Willebrand factor A domain containing 3B##BC026091|VWA3B|200403|von Willebrand factor A domain containing 3B	0.0	0.0	
chr4	185331060	185331165	reg1013041.p1	3.773	+	BC035035 AY358676 AK057370 NM_153343	-192047	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-503201	+	TSC_hg19_v1_chr4_+_184827807 AK289840	-503292	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	64569	-	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	239489	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	239721	+	BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK289840|STOX2|56977|storkhead box 2##X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111	1.963178	0.0	denovo_WM_7:-6:0.898	denovo_WM_7:-45:0.209	denovo_WM_7:-47:0.550
chr5	133983421	133983539	reg1001094.p1	3.773	+	BC002847 TSC_hg19_v1_chr5_-_133968519 AK223452 AF092130 BC093034 NM_001033503 NM_016103	-14983	-	BC012749 D87076 NM_015288 TSC_hg19_v1_chr5_+_133861926 AK290471	-121675	+	TSC_hg19_v1_chr5_+_133861359 AK056471 BC021962 AK292635 AK074123	-122117	+	TSC_hg19_v1_chr5_+_133984493 AK304060 NM_001252231 NM_021982 BC019341	951	+	TSC_hg19_v1_chr5_+_134074237 NM_001745 BC130325 AK313156 BC063532 U18242 AB590695 HQ258172 AF068179	90830	+	NM_014829 TSC_hg19_v1_chr5_+_134094470 AK126011 AK291788 BC105598 AF106680 AB018344 BC012304 CU680282	111063	+	BC002847|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AK223452|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##AF092130|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##BC093034|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_001033503|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##NM_016103|SAR1B|51128|SAR1 homolog B (S. cerevisiae)##D87076|PHF15|23338|PHD finger protein 15##NM_015288|PHF15|23338|PHD finger protein 15##AK290471|PHF15|23338|PHD finger protein 15##AK056471|PHF15|23338|PHD finger protein 15##BC021962|PHF15|23338|PHD finger protein 15##AK292635|PHF15|23338|PHD finger protein 15##AK074123|PHF15|23338|PHD finger protein 15##AK304060|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001252231|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_021982|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##BC019341|SEC24A|10802|SEC24 family, member A (S. cerevisiae)##NM_001745|CAMLG|819|calcium modulating ligand##BC130325|CAMLG|819|calcium modulating ligand##AK313156|CAMLG|819|calcium modulating ligand##BC063532|CAMLG|819|calcium modulating ligand##U18242|CAMLG|819|calcium modulating ligand##HQ258172|CAMLG|819|calcium modulating ligand##AF068179|CAMLG|819|calcium modulating ligand##NM_014829|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK126011|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AK291788|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC105598|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AF106680|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##AB018344|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46##BC012304|DDX46|9879|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.0	0.0	
chr7	32919553	32919720	reg1011199.p2	3.773	+	TSC_hg19_v1_chr7_+_32767741 AK094370 BC126382 BC126384	-151898	+	TSC_hg19_v1_chr7_+_32535168 AK090619 AX746537 NM_015060 BC027724 CU693288	-384406	+	TSC_hg19_v1_chr7_+_32535132 AL833560	-384541	+	AK292802 BC047107 TSC_hg19_v1_chr7_-_32931241	11625	-	TSC_hg19_v1_chr7_-_32931372 BC037887	11733	-	TSC_hg19_v1_chr7_-_32931481 NM_015483	11815	-	AK094370|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126382|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##BC126384|ZNRF2P1|441208|zinc and ring finger 2 pseudogene 1##AK090619|AVL9|23080|AVL9 homolog (S. cerevisiase)##NM_015060|AVL9|23080|AVL9 homolog (S. cerevisiase)##BC027724|AVL9|23080|AVL9 homolog (S. cerevisiase)##AL833560|AVL9|23080|AVL9 homolog (S. cerevisiase)##AK292802|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC047107|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##BC037887|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2##NM_015483|KBTBD2|25948|kelch repeat and BTB (POZ) domain containing 2	1.362865	0.0	denovo_WM_7:-73:0.792	denovo_WM_7:95:0.550
chrX	117196895	117197017	reg1014425.p1	3.773	+	AK296324 NM_001168299	-77628	-	AK125356 NM_033495 NM_001168300	-89227	-	BC062223 NM_001017978 AK000618 AK026566	-1602807	-	AL591986 TSC_hg19_v1_chrX_-_117250764 AK316509 NM_001168302 NM_001168303	53769	-	AK302713 NM_001168301	54346	-	TSC_hg19_v1_chrX_+_117480068 NM_001184965 NM_001184966 NM_019045 AK127556 BX537578 AL833605 BX538087 AK299711 BC028697 BX648150	283209	+	AK296324|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168299|KLHL13|90293|kelch-like 13 (Drosophila)##AK125356|KLHL13|90293|kelch-like 13 (Drosophila)##NM_033495|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168300|KLHL13|90293|kelch-like 13 (Drosophila)##BC062223|CXorf61|203413|chromosome X open reading frame 61##NM_001017978|CXorf61|203413|chromosome X open reading frame 61##AK000618|CXorf61|203413|chromosome X open reading frame 61##AK026566|CXorf61|203413|chromosome X open reading frame 61##AL591986|KLHL13|90293|kelch-like 13 (Drosophila)##AK316509|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168302|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168303|KLHL13|90293|kelch-like 13 (Drosophila)##AK302713|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001168301|KLHL13|90293|kelch-like 13 (Drosophila)##NM_001184965|WDR44|54521|WD repeat domain 44##NM_001184966|WDR44|54521|WD repeat domain 44##NM_019045|WDR44|54521|WD repeat domain 44##AK127556|WDR44|54521|WD repeat domain 44##BX537578|WDR44|54521|WD repeat domain 44##AL833605|WDR44|54521|WD repeat domain 44##BX538087|WDR44|54521|WD repeat domain 44##AK299711|WDR44|54521|WD repeat domain 44##BC028697|WDR44|54521|WD repeat domain 44##BX648150|WDR44|54521|WD repeat domain 44	0.410943	0.0	denovo_WM_7:-16:0.342
chr12	38197255	38197360	reg1018675.p1	3.772	+	TSC_hg19_v1_chr12_+_34175430 BC070347 BC033730 BC090948 AK292488 BC075807 DQ892056 DQ895250	-4021834	+	TSC_hg19_v1_chr12_+_34175402 BC022336	-4021921	+	AJ312278 NM_032834	-4022092	+	NM_001013620 TSC_hg19_v1_chr12_+_38710583 AK307955 BC137413 BC137414 BC144617 AY845858	513318	+	AB527319 AM392913 AY177785 BC048260 BC068040 AK307908 TSC_hg19_v1_chr12_-_39299394 BC110577 BC110578 NM_153634 BX538055	1102076	-	AB051495 AM177179 AB384627 AY368076 BC136414 BC041430 AF155117 AF450487 TSC_hg19_v1_chr12_-_39836923 AK000059 AB290166 NM_001173463 NM_001173464 NM_001173465 NM_017641	1639692	-	BC070347|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC033730|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC090948|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AK292488|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC075807|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ892056|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##DQ895250|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##BC022336|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##AJ312278|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_032834|ALG10|84920|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)##NM_001013620|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AK307955|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137413|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##BC137414|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AY845858|ALG10B|144245|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast)##AM392913|CPNE8|144402|copine VIII##AY177785|CPNE8|144402|copine VIII##BC048260|CPNE8|144402|copine VIII##BC068040|CPNE8|144402|copine VIII##AK307908|CPNE8|144402|copine VIII##BC110577|CPNE8|144402|copine VIII##BC110578|CPNE8|144402|copine VIII##NM_153634|CPNE8|144402|copine VIII##BX538055|CPNE8|144402|copine VIII##AB051495|KIF21A|55605|kinesin family member 21A##AM177179|KIF21A|55605|kinesin family member 21A##AY368076|KIF21A|55605|kinesin family member 21A##BC136414|KIF21A|55605|kinesin family member 21A##BC041430|KIF21A|55605|kinesin family member 21A##AF155117|KIF21A|55605|kinesin family member 21A##AF450487|KIF21A|55605|kinesin family member 21A##AK000059|KIF21A|55605|kinesin family member 21A##AB290166|KIF21A|55605|kinesin family member 21A##NM_001173463|KIF21A|55605|kinesin family member 21A##NM_001173464|KIF21A|55605|kinesin family member 21A##NM_001173465|KIF21A|55605|kinesin family member 21A##NM_017641|KIF21A|55605|kinesin family member 21A	0.0	0.0	
chr12	66377700	66377804	reg1009190.p2	3.772	+	TSC_hg19_v1_chr12_+_66218882 JF268496 S80262 GQ272323 AF533652 AF533653 AF533654	-158739	+	TSC_hg19_v1_chr12_+_66218605 AK311399	-159145	+	TSC_hg19_v1_chr12_+_66218262 AY601861 AY601862 AY601863 AY601864 AY601865 AY601866 AY601867 NM_003483 NM_003484 U28749 Z31595	-159545	+	TSC_hg19_v1_chr12_-_66524536 BC070232 BC006002 BC107780 AK091568 AX747065 NM_032338	146773	-	AB464309 TSC_hg19_v1_chr12_-_66563773 AF182414 AF161526 BC020613 AF113127 AK301359 AF182041 AK075069 AK225158 BC070366 BC052273 BC094852	186002	-	TSC_hg19_v1_chr12_-_66563806 BC004401 NM_016056	186050	-	AF533652|HMGA2|8091|high mobility group AT-hook 2##AF533653|HMGA2|8091|high mobility group AT-hook 2##AF533654|HMGA2|8091|high mobility group AT-hook 2##AK311399|HMGA2|8091|high mobility group AT-hook 2##AY601861|HMGA2|8091|high mobility group AT-hook 2##AY601862|HMGA2|8091|high mobility group AT-hook 2##AY601863|HMGA2|8091|high mobility group AT-hook 2##AY601864|HMGA2|8091|high mobility group AT-hook 2##AY601865|HMGA2|8091|high mobility group AT-hook 2##AY601866|HMGA2|8091|high mobility group AT-hook 2##AY601867|HMGA2|8091|high mobility group AT-hook 2##NM_003483|HMGA2|8091|high mobility group AT-hook 2##NM_003484|HMGA2|8091|high mobility group AT-hook 2##U28749|HMGA2|8091|high mobility group AT-hook 2##Z31595|HMGA2|8091|high mobility group AT-hook 2##BC070232|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##BC006002|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##BC107780|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##AK091568|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##NM_032338|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##AF182414|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF161526|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC020613|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF113127|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF182041|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AK075069|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AK225158|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC070366|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC052273|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC094852|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC004401|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##NM_016056|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4	0.0	0.0	
chr13	28621915	28622026	reg1011424.p1	3.772	+	NM_001105577	-59197	-	TSC_hg19_v1_chr13_-_28543453 Y13709	-78507	-	TSC_hg19_v1_chr13_-_28543325 BC014461 NM_001265	-78662	-	Z26652 BC126350 BC144039 BC144040 U02687 TSC_hg19_v1_chr13_-_28674704 BC036028 NM_004119	52717	-	TSC_hg19_v1_chr13_+_28712658 AK296435 NM_175854	90696	+	BC039007 U01134 X51602 BC029849 BC046165 BC048278 TSC_hg19_v1_chr13_-_29069266 AK292936 AK300392 AK309901 EU360600 NM_001159920 NM_001160030 NM_001160031 NM_002019	447274	-	NM_001105577|PRHOXNB|646625|parahox cluster neighbor##Y13709|CDX2|1045|caudal type homeobox 2##BC014461|CDX2|1045|caudal type homeobox 2##NM_001265|CDX2|1045|caudal type homeobox 2##Z26652|FLT3|2322|fms-related tyrosine kinase 3##BC126350|FLT3|2322|fms-related tyrosine kinase 3##BC144039|FLT3|2322|fms-related tyrosine kinase 3##BC144040|FLT3|2322|fms-related tyrosine kinase 3##U02687|FLT3|2322|fms-related tyrosine kinase 3##BC036028|FLT3|2322|fms-related tyrosine kinase 3##NM_004119|FLT3|2322|fms-related tyrosine kinase 3##AK296435|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##NM_175854|PAN3|255967|PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)##BC039007|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##U01134|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##BC029849|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK292936|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK300392|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##AK309901|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##EU360600|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001159920|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160030|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_001160031|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)##NM_002019|FLT1|2321|fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)	0.984339	0.0	denovo_WM_7:-94:0.891
chr14	22771812	22771967	reg1002395.p2	3.772	+	AB463964 NM_001001912 AY726598	-638567	+	NM_001005466 AB529274 BC137371 BC137382	-668843	-	AB528817 NM_001005465	-733015	-	X58763 TSC_hg19_v1_chr14_+_22989364	217460	+	CR407682 CR542204 DQ892868 DQ896117 TSC_hg19_v1_chr14_-_23058102 BC009798	286197	-	BC007403 TSC_hg19_v1_chr14_-_23058122 D15057 AK223129 NM_001344	286245	-	NM_001001912|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##AY726598|OR4E2|26686|olfactory receptor, family 4, subfamily E, member 2##NM_001005466|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137371|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##BC137382|OR10G2|26534|olfactory receptor, family 10, subfamily G, member 2##NM_001005465|OR10G3|26533|olfactory receptor, family 10, subfamily G, member 3##CR407682|DAD1|1603|defender against cell death 1##CR542204|DAD1|1603|defender against cell death 1##DQ892868|DAD1|1603|defender against cell death 1##DQ896117|DAD1|1603|defender against cell death 1##BC009798|DAD1|1603|defender against cell death 1##BC007403|DAD1|1603|defender against cell death 1##D15057|DAD1|1603|defender against cell death 1##AK223129|DAD1|1603|defender against cell death 1##NM_001344|DAD1|1603|defender against cell death 1	0.43023	0.0	
chr16	46816407	46816504	reg1014004.p1	3.772	+	AB451455 BC109096 BC109097 AJ247087 NM_182493	-34293	-	AF139658 TSC_hg19_v1_chr16_+_46723600 BC039032 BC063565 AK310633 AK021946 AB528212 AM392646 AM392910 AM393245 AM393680 AM393794 CU687764	-92858	+	BC050725 NM_014321 AK024019 TSC_hg19_v1_chr16_+_46723570 AK024077	-92890	+	TSC_hg19_v1_chr16_-_46865090 CU691166 BC056676 BX647945 NM_001001436	48633	-	TSC_hg19_v1_chr16_+_46918291 AY029173 NM_133443 BC062555	101826	+	NM_001142466 AK094971	102647	+	AB451455|MYLK3|91807|myosin light chain kinase 3##BC109096|MYLK3|91807|myosin light chain kinase 3##BC109097|MYLK3|91807|myosin light chain kinase 3##AJ247087|MYLK3|91807|myosin light chain kinase 3##NM_182493|MYLK3|91807|myosin light chain kinase 3##AF139658|ORC6|23594|origin recognition complex, subunit 6##BC039032|ORC6|23594|origin recognition complex, subunit 6##BC063565|ORC6|23594|origin recognition complex, subunit 6##AK310633|ORC6|23594|origin recognition complex, subunit 6##AK021946|ORC6|23594|origin recognition complex, subunit 6##AM392646|ORC6|23594|origin recognition complex, subunit 6##AM392910|ORC6|23594|origin recognition complex, subunit 6##AM393245|PPA2|27068|pyrophosphatase (inorganic) 2##AM393680|ORC6|23594|origin recognition complex, subunit 6##AM393794|PPA2|27068|pyrophosphatase (inorganic) 2##BC050725|ORC6|23594|origin recognition complex, subunit 6##NM_014321|ORC6|23594|origin recognition complex, subunit 6##AK024019|ORC6|23594|origin recognition complex, subunit 6##AK024077|ORC6|23594|origin recognition complex, subunit 6##BC056676|C16orf87|388272|chromosome 16 open reading frame 87##BX647945|C16orf87|388272|chromosome 16 open reading frame 87##NM_001001436|C16orf87|388272|chromosome 16 open reading frame 87##AY029173|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_133443|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##BC062555|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##NM_001142466|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2##AK094971|GPT2|84706|glutamic pyruvate transaminase (alanine aminotransferase) 2	0.902094	0.0	
chr18	47886399	47886465	reg1014642.p2	3.772	+	BX647189 NM_001101654 NM_014593	-71741	-	AB031069 AF149758 AK314886 TSC_hg19_v1_chr18_-_47814205 AK294645	-72225	-	TSC_hg19_v1_chr18_-_47814047 BC002504 BC014940	-72396	-	TSC_hg19_v1_chr18_+_47901415 NM_001039535 NM_145060 BC015706 AK313968 AK303464	14965	+	TSC_hg19_v1_chr18_+_48086463 BC050299 NM_002747 AK293818 BC040493 AK295058	200065	+	AB042647 AK054702 AK295666 NM_001127175 NM_001127176 NM_031939	459933	-	BX647189|CXXC1|30827|CXXC finger protein 1##NM_001101654|CXXC1|30827|CXXC finger protein 1##NM_014593|CXXC1|30827|CXXC finger protein 1##AB031069|CXXC1|30827|CXXC finger protein 1##AF149758|CXXC1|30827|CXXC finger protein 1##AK314886|CXXC1|30827|CXXC finger protein 1##AK294645|CXXC1|30827|CXXC finger protein 1##BC002504|CXXC1|30827|CXXC finger protein 1##BC014940|CXXC1|30827|CXXC finger protein 1##NM_001039535|SKA1|220134|spindle and kinetochore associated complex subunit 1##NM_145060|SKA1|220134|spindle and kinetochore associated complex subunit 1##BC015706|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK313968|SKA1|220134|spindle and kinetochore associated complex subunit 1##AK303464|SKA1|220134|spindle and kinetochore associated complex subunit 1##BC050299|MAPK4|5596|mitogen-activated protein kinase 4##NM_002747|MAPK4|5596|mitogen-activated protein kinase 4##AK293818|MAPK4|5596|mitogen-activated protein kinase 4##BC040493|MAPK4|5596|mitogen-activated protein kinase 4##AK295058|MAPK4|5596|mitogen-activated protein kinase 4##AB042647|MRO|83876|maestro##AK054702|MRO|83876|maestro##AK295666|MRO|83876|maestro##NM_001127175|MRO|83876|maestro##NM_001127176|MRO|83876|maestro##NM_031939|MRO|83876|maestro	0.0	0.0	
chr22	38059269	38059444	reg1016455.p1	3.772	+	TSC_hg19_v1_chr22_+_38054751 BC064922 NM_020315 BC000320 BC018844 AY125047	-4611	+	TSC_hg19_v1_chr22_+_38035718 CR456576 AB463257 CU013175 CU013463	-23597	+	TSC_hg19_v1_chr22_+_38035696 AK301163	-23652	+	CR456511 NM_002305 EU363770 AK312161 BC020675 TSC_hg19_v1_chr22_+_38071644 AL832117 D28452 BC001693 AB097036 J04456 X15256 X14829	12301	+	TSC_hg19_v1_chr22_+_38082360 NM_024313 AK057139 AK294700 AK316443 BC002808 AK310084 AL160132 CR456463 AB528193 CU012996 CU013284 DQ278603	23019	+	NM_001039141 TSC_hg19_v1_chr22_+_38093008 AK096634	33646	+	BC064922|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##NM_020315|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##BC000320|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##BC018844|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##AY125047|PDXP|57026|pyridoxal (pyridoxine, vitamin B6) phosphatase##CR456576|SH3BP1|23616|SH3-domain binding protein 1##CU013175|SH3BP1|23616|SH3-domain binding protein 1##CU013463|SH3BP1|23616|SH3-domain binding protein 1##AK301163|SH3BP1|23616|SH3-domain binding protein 1##CR456511|LGALS1|3956|lectin, galactoside-binding, soluble, 1##NM_002305|LGALS1|3956|lectin, galactoside-binding, soluble, 1##EU363770|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AK312161|LGALS1|3956|lectin, galactoside-binding, soluble, 1##BC020675|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AL832117|LGALS1|3956|lectin, galactoside-binding, soluble, 1##D28452|LGALS1|3956|lectin, galactoside-binding, soluble, 1##BC001693|LGALS1|3956|lectin, galactoside-binding, soluble, 1##AB097036|LGALS1|3956|lectin, galactoside-binding, soluble, 1##J04456|LGALS1|3956|lectin, galactoside-binding, soluble, 1##X15256|LGALS1|3956|lectin, galactoside-binding, soluble, 1##X14829|LGALS1|3956|lectin, galactoside-binding, soluble, 1##NM_024313|NOL12|79159|nucleolar protein 12##AK057139|NOL12|79159|nucleolar protein 12##AK294700|NOL12|79159|nucleolar protein 12##AK316443|NOL12|79159|nucleolar protein 12##BC002808|NOL12|79159|nucleolar protein 12##AL160132|NOL12|79159|nucleolar protein 12##CR456463|NOL12|79159|nucleolar protein 12##NM_001039141|TRIOBP|11078|TRIO and F-actin binding protein##AK096634|TRIOBP|11078|TRIO and F-actin binding protein	0.991737	0.0	denovo_WM_7:-36:0.331	denovo_WM_7:-37:0.331	denovo_WM_7:-38:0.331
chr7	110878702	110878810	reg1014422.p2	3.772	+	NM_001099658 NM_001099660 NM_018334 AK001991 BC035133 TSC_hg19_v1_chr7_+_110731182	-147633	+	NM_001024607	-2354120	-	TSC_hg19_v1_chr7_+_108210317 AL080081 AB026908 AF083247 BC028912 AF115512 AF093824	-2668382	+	AF359563 NM_032549 TSC_hg19_v1_chr7_-_111202539 AK311968 BC008497 NM_001244606	323728	-	TSC_hg19_v1_chr7_-_111428948 AK294820	550255	-	AY233380 BC117688 BC117689 BC117694 TSC_hg19_v1_chr7_-_111846334	967509	-	NM_001099658|LRRN3|54674|leucine rich repeat neuronal 3##NM_001099660|LRRN3|54674|leucine rich repeat neuronal 3##NM_018334|LRRN3|54674|leucine rich repeat neuronal 3##AK001991|LRRN3|54674|leucine rich repeat neuronal 3##BC035133|LRRN3|54674|leucine rich repeat neuronal 3##NM_001024607|C7orf66|154907|chromosome 7 open reading frame 66##AL080081|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AB026908|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF083247|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##BC028912|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF093824|DNAJB9|4189|DnaJ (Hsp40) homolog, subfamily B, member 9##AF359563|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_032549|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK311968|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##BC008497|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##NM_001244606|IMMP2L|83943|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)##AK294820|DOCK4|9732|dedicator of cytokinesis 4##AY233380|DOCK4|9732|dedicator of cytokinesis 4##BC117688|DOCK4|9732|dedicator of cytokinesis 4##BC117689|DOCK4|9732|dedicator of cytokinesis 4##BC117694|DOCK4|9732|dedicator of cytokinesis 4	0.0	0.0	
chr11	27255933	27256044	reg1015035.p1	3.771	+	NM_003986	-193480	+	TSC_hg19_v1_chr11_+_27015837 BC026873	-240144	+	TSC_hg19_v1_chr11_+_27015673 AK310616	-240318	+	AF382034 TSC_hg19_v1_chr11_-_27384763 AY598334 CU678989 AK313358 BC008496 AK308494 NM_030771 NM_080654	128778	-	TSC_hg19_v1_chr11_-_27494323 AB209743 AF257182 BC033039 NM_018490	238316	-	AB385247 BC053907 TSC_hg19_v1_chr11_-_27528315 BC009774 AK223156 AL833601 AK002077 NM_018362	272324	-	NM_003986|BBOX1|8424|butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1##BC026873|FIBIN|387758|fin bud initiation factor homolog (zebrafish)##AF382034|CCDC34|91057|coiled-coil domain containing 34##AY598334|CCDC34|91057|coiled-coil domain containing 34##AK313358|CCDC34|91057|coiled-coil domain containing 34##BC008496|CCDC34|91057|coiled-coil domain containing 34##AK308494|CCDC34|91057|coiled-coil domain containing 34##NM_030771|CCDC34|91057|coiled-coil domain containing 34##NM_080654|CCDC34|91057|coiled-coil domain containing 34##AB209743|LGR4|55366|leucine-rich repeat containing G protein-coupled receptor 4##AF257182|LGR4|55366|leucine-rich repeat containing G protein-coupled receptor 4##BC033039|LGR4|55366|leucine-rich repeat containing G protein-coupled receptor 4##NM_018490|LGR4|55366|leucine-rich repeat containing G protein-coupled receptor 4##BC053907|LIN7C|55327|lin-7 homolog C (C. elegans)##BC009774|LIN7C|55327|lin-7 homolog C (C. elegans)##AK223156|LIN7C|55327|lin-7 homolog C (C. elegans)##AL833601|LIN7C|55327|lin-7 homolog C (C. elegans)##AK002077|LIN7C|55327|lin-7 homolog C (C. elegans)##NM_018362|LIN7C|55327|lin-7 homolog C (C. elegans)	0.356852	0.0	denovo_WM_7:88:0.231
chr11	82870105	82870257	reg1016425.p1	3.771	+	NM_015885 TSC_hg19_v1_chr11_+_82868196 AK302606 AF046935 AK025103 AB020631 BC146778 BC110432 BC065384	-1776	+	BC031316 TSC_hg19_v1_chr11_+_82783118	-87063	+	BC014213 NM_014488 TSC_hg19_v1_chr11_-_82782897 BX641138	-87284	-	AK311356 TSC_hg19_v1_chr11_-_82904700	34521	-	TSC_hg19_v1_chr11_+_82904780 DQ508934 BC045621 AK310765 EF041819	34653	+	BX648690 NM_182603 DQ508815 AK095193 BC171752	35307	+	NM_015885|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK302606|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AF046935|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AK025103|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##AB020631|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC146778|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC110432|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC065384|PCF11|51585|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)##BC031316|LOC100506233|100506233|uncharacterized LOC100506233##BC014213|RAB30|27314|RAB30, member RAS oncogene family##NM_014488|RAB30|27314|RAB30, member RAS oncogene family##BX641138|RAB30|27314|RAB30, member RAS oncogene family##AK311356|DKFZp547G183|55525|uncharacterized LOC55525##DQ508934|ANKRD42|338699|ankyrin repeat domain 42##BC045621|ANKRD42|338699|ankyrin repeat domain 42##AK310765|ANKRD42|338699|ankyrin repeat domain 42##EF041819|ANKRD42|338699|ankyrin repeat domain 42##BX648690|ANKRD42|338699|ankyrin repeat domain 42##NM_182603|ANKRD42|338699|ankyrin repeat domain 42##DQ508815|ANKRD42|338699|ankyrin repeat domain 42##AK095193|ANKRD42|338699|ankyrin repeat domain 42##BC171752|ANKRD42|338699|ankyrin repeat domain 42	0.926163	0.0	denovo_WM_7:-41:0.718
chr13	74862170	74862259	reg1016266.p2	3.771	+	TSC_hg19_v1_chr13_-_74708425 AK291397	-153818	-	AF161471 AF113122 NM_007249	-154225	-	TSC_hg19_v1_chr13_+_73633142 AK296900 NM_001730 AK304284 BC007695 AF287272 BC014302 AB030824 BC042131	-1229010	+	CR749622 TSC_hg19_v1_chr13_-_75901948	1039708	-	TSC_hg19_v1_chr13_-_76056306 AB449885 AB463305 FM207106 FM207107 BC151239 AB011175 NM_014832 AK307493	1194124	-	AY542161 HQ258699 BC110837 TSC_hg19_v1_chr13_-_76111978 BX538116 AF169971 AK000009 BC117391 BC143912 BC171758 NM_203495 NM_203497	1249764	-	AK291397|KLF12|11278|Kruppel-like factor 12##AF161471|KLF12|11278|Kruppel-like factor 12##AF113122|KLF12|11278|Kruppel-like factor 12##NM_007249|KLF12|11278|Kruppel-like factor 12##AK296900|KLF5|688|Kruppel-like factor 5 (intestinal)##NM_001730|KLF5|688|Kruppel-like factor 5 (intestinal)##AK304284|KLF5|688|Kruppel-like factor 5 (intestinal)##BC007695|KLF5|688|Kruppel-like factor 5 (intestinal)##AF287272|KLF5|688|Kruppel-like factor 5 (intestinal)##BC014302|KLF5|688|Kruppel-like factor 5 (intestinal)##AB030824|KLF5|688|Kruppel-like factor 5 (intestinal)##BC042131|KLF5|688|Kruppel-like factor 5 (intestinal)##CR749622|TBC1D4|9882|TBC1 domain family, member 4##AB449885|TBC1D4|9882|TBC1 domain family, member 4##FM207106|TBC1D4|9882|TBC1 domain family, member 4##FM207107|TBC1D4|9882|TBC1 domain family, member 4##BC151239|TBC1D4|9882|TBC1 domain family, member 4##AB011175|TBC1D4|9882|TBC1 domain family, member 4##NM_014832|TBC1D4|9882|TBC1 domain family, member 4##AK307493|TBC1D4|9882|TBC1 domain family, member 4##AY542161|COMMD6|170622|COMM domain containing 6##HQ258699|COMMD6|170622|COMM domain containing 6##BC110837|COMMD6|170622|COMM domain containing 6##BX538116|COMMD6|170622|COMM domain containing 6##AF169971|COMMD6|170622|COMM domain containing 6##AK000009|COMMD6|170622|COMM domain containing 6##BC117391|COMMD6|170622|COMM domain containing 6##BC143912|COMMD6|170622|COMM domain containing 6##BC171758|COMMD6|170622|COMM domain containing 6##NM_203495|COMMD6|170622|COMM domain containing 6##NM_203497|COMMD6|170622|COMM domain containing 6	0.0	0.0	
chr15	29598908	29598991	reg1005701.p2	3.771	+	TSC_hg19_v1_chr15_-_29562011 AK056957 AF490510 NM_138704	-36920	-	TSC_hg19_v1_chr15_-_29561989 BC041166 BC053999 BC035458	-36979	-	NM_001130414 NM_005503 AF047348 BC082986	-385100	+	NM_015307	263977	-	AK304758 TSC_hg19_v1_chr15_-_30114336	515393	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	515674	-	AK056957|NDNL2|56160|necdin-like 2##AF490510|NDNL2|56160|necdin-like 2##NM_138704|NDNL2|56160|necdin-like 2##BC041166|NDNL2|56160|necdin-like 2##BC053999|NDNL2|56160|necdin-like 2##BC035458|NDNL2|56160|necdin-like 2##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)	1.995564	0.0	
chr1	67825370	67825489	reg1018664.p2	3.771	+	AK294494 TSC_hg19_v1_chr1_+_67773565 AK316525	-51866	+	NM_001559 U64198 TSC_hg19_v1_chr1_+_67773087	-52348	+	AF461422 NM_144701	-193261	+	CR457383 AB527591 CU675982 CU676556 CU677990 CU693242 EU831446 EU831638 EU831722 EU832650 EU832728 TSC_hg19_v1_chr1_-_67896065 BC003049 AK130606 BC002488 BC008045 BC017449 BC020555 BC026916 BC019273 AL080119 AF151813	70594	-	TSC_hg19_v1_chr1_-_67896070 AK074970 AK222955 AK223138	70643	-	TSC_hg19_v1_chr1_-_67896086 AK312256	70656	-	AK294494|IL12RB2|3595|interleukin 12 receptor, beta 2##AK316525|IL12RB2|3595|interleukin 12 receptor, beta 2##NM_001559|IL12RB2|3595|interleukin 12 receptor, beta 2##U64198|IL12RB2|3595|interleukin 12 receptor, beta 2##AF461422|IL23R|149233|interleukin 23 receptor##NM_144701|IL23R|149233|interleukin 23 receptor##CR457383|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831446|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831638|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU831722|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832650|SERBP1|26135|SERPINE1 mRNA binding protein 1##EU832728|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC003049|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK130606|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC002488|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC008045|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC017449|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC020555|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC026916|SERBP1|26135|SERPINE1 mRNA binding protein 1##BC019273|SERBP1|26135|SERPINE1 mRNA binding protein 1##AL080119|SERBP1|26135|SERPINE1 mRNA binding protein 1##AF151813|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK074970|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK222955|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK223138|SERBP1|26135|SERPINE1 mRNA binding protein 1##AK312256|SERBP1|26135|SERPINE1 mRNA binding protein 1	0.995975	0.0	denovo_WM_7:-23:0.694
chr17	71295025	71295122	reg1018894.p1	3.771	+	BC157870 NM_001129885	-37055	-	BC005005 TSC_hg19_v1_chr17_+_71229423	-65683	+	TSC_hg19_v1_chr17_+_71228800 AY163812 NM_001100621 NM_001100622 NM_017941 AL136740 AK000728	-66267	+	BC010451 TSC_hg19_v1_chr17_-_71308141 AK097835 AK027385 AK312536 BC002774 NM_012121	13067	-	NM_001144952	345153	-	NM_000999 NM_001035258 AK097905 TSC_hg19_v1_chr17_+_72199816 AB055771 AK312119	904742	+	BC157870|CPSF4L|642843|cleavage and polyadenylation specific factor 4-like##NM_001129885|CPSF4L|642843|cleavage and polyadenylation specific factor 4-like##BC005005|C17orf80|55028|chromosome 17 open reading frame 80##AY163812|C17orf80|55028|chromosome 17 open reading frame 80##NM_001100621|C17orf80|55028|chromosome 17 open reading frame 80##NM_001100622|C17orf80|55028|chromosome 17 open reading frame 80##NM_017941|C17orf80|55028|chromosome 17 open reading frame 80##AL136740|C17orf80|55028|chromosome 17 open reading frame 80##AK000728|C17orf80|55028|chromosome 17 open reading frame 80##BC010451|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK097835|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK027385|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##AK312536|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##BC002774|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##NM_012121|CDC42EP4|23580|CDC42 effector protein (Rho GTPase binding) 4##NM_001144952|SDK2|54549|sidekick cell adhesion molecule 2##NM_000999|RPL38|6169|ribosomal protein L38##NM_001035258|RPL38|6169|ribosomal protein L38##AB055771|RPL38|6169|ribosomal protein L38##AK312119|RPL38|6169|ribosomal protein L38	0.987692	0.0	denovo_WM_7:34:0.348	denovo_WM_7:35:0.366	denovo_WM_7:36:0.274
chr19	18669681	18669818	reg1014206.p2	3.771	+	TSC_hg19_v1_chr19_+_18668679 AF173381	-1075	+	NM_001171948 NM_001171949 NM_024069 TSC_hg19_v1_chr19_+_18668584 AK125365 AK098346 BC001080 BC006479	-1139	+	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	-15367	-	NM_001033930 NM_003333 TSC_hg19_v1_chr19_+_18682666 AF348700 BC101830 BC101832 BC143668 D28425 AK314717	12908	+	NM_001100418 NM_001100419 TSC_hg19_v1_chr19_+_18699611 BC012078 AK000857 AK091925 AX747258 AK054670	29818	+	EU832355 EU832440 AF178684 TSC_hg19_v1_chr19_-_18717548	47771	-	AF173381|KXD1|79036|KxDL motif containing 1##NM_001171948|KXD1|79036|KxDL motif containing 1##NM_001171949|KXD1|79036|KxDL motif containing 1##NM_024069|KXD1|79036|KxDL motif containing 1##AK125365|KXD1|79036|KxDL motif containing 1##AK098346|KXD1|79036|KxDL motif containing 1##BC001080|KXD1|79036|KxDL motif containing 1##BC006479|KXD1|79036|KxDL motif containing 1##BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_001033930|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_003333|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AF348700|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101830|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC101832|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##BC143668|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##AK314717|UBA52|7311|ubiquitin A-52 residue ribosomal protein fusion product 1##NM_001100418|C19orf60|55049|chromosome 19 open reading frame 60##NM_001100419|C19orf60|55049|chromosome 19 open reading frame 60##BC012078|C19orf60|55049|chromosome 19 open reading frame 60##AK000857|C19orf60|55049|chromosome 19 open reading frame 60##AK091925|C19orf60|55049|chromosome 19 open reading frame 60##AK054670|C19orf60|55049|chromosome 19 open reading frame 60##EU832355|CRLF1|9244|cytokine receptor-like factor 1##EU832440|CRLF1|9244|cytokine receptor-like factor 1##AF178684|CRLF1|9244|cytokine receptor-like factor 1	1.095217	0.010548	
chr2	174172041	174172153	reg1011809.p1	3.771	+	AB030034 TSC_hg19_v1_chr2_+_173940603 AF465843 AK298634 BC001401 AK291825 AF251441	-231449	+	TSC_hg19_v1_chr2_+_173940576 AK056310 NM_016653 NM_133646 AF480461 AF480462	-231551	+	AB208974 TSC_hg19_v1_chr2_+_173940455	-231649	+	TSC_hg19_v1_chr2_+_174219599 AY029179 NM_031942 NM_145810 AK027642 AK027628 BC027966 AK075134 AK297097 AK300949 AK297245 AL834186 CU693352 AB527763	47516	+	AK023489 TSC_hg19_v1_chr2_-_174767427	595257	-	X68560 TSC_hg19_v1_chr2_-_174828559 M97191	656450	-	AB030034|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AF465843|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AK298634|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##BC001401|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AK291825|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AF251441|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AK056310|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##NM_016653|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##NM_133646|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AF480461|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AF480462|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AB208974|ZAK|51776|sterile alpha motif and leucine zipper containing kinase AZK##AY029179|CDCA7|83879|cell division cycle associated 7##NM_031942|CDCA7|83879|cell division cycle associated 7##NM_145810|CDCA7|83879|cell division cycle associated 7##AK027642|CDCA7|83879|cell division cycle associated 7##AK027628|CDCA7|83879|cell division cycle associated 7##BC027966|CDCA7|83879|cell division cycle associated 7##AK075134|CDCA7|83879|cell division cycle associated 7##AK297097|CDCA7|83879|cell division cycle associated 7##AK300949|CDCA7|83879|cell division cycle associated 7##AK297245|CDCA7|83879|cell division cycle associated 7##AL834186|CDCA7|83879|cell division cycle associated 7##X68560|SP3|6670|Sp3 transcription factor##M97191|SP3|6670|Sp3 transcription factor	0.053232	0.0	
chr3	135907922	135908102	reg1018573.p2	3.771	+	NM_181897 AK316258 L12146	-166394	+	BC029409 TSC_hg19_v1_chr3_+_135684606 L07590	-223392	+	TSC_hg19_v1_chr3_+_135684569 NM_001190447 NM_002718 AK293012 BC015034 BC065531 AK298059 AK314243	-223481	+	AK302491 NM_001145417	5280	-	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	6669	-	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	61152	+	NM_181897|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK316258|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L12146|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC029409|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##L07590|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_001190447|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##NM_002718|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK293012|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC015034|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##BC065531|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK298059|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK314243|PPP2R3A|5523|protein phosphatase 2, regulatory subunit B'', alpha##AK302491|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_001145417|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide	1.966967	0.0	denovo_WM_7:-38:0.799	denovo_WM_7:-53:0.813
chr4	40899825	40899931	reg1015189.p2	3.771	+	TSC_hg19_v1_chr4_-_40859162 AK299800 NM_001166051 NM_001166052 NM_001166053 NM_001166054	-40703	-	BC042401 NM_024677 BC036568 AK024063	-147932	+	AK304206 TSC_hg19_v1_chr4_-_40632775	-267171	-	BC088372 TSC_hg19_v1_chr4_-_40936716	36800	-	TSC_hg19_v1_chr4_-_41216560 BC027946 AK304247 AK226179 NM_001166050 NM_004307 NM_173075	316691	-	TSC_hg19_v1_chr4_+_41258897 NM_004181	359018	+	AK299800|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166051|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166052|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166053|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166054|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC042401|NSUN7|79730|NOP2/Sun domain family, member 7##NM_024677|NSUN7|79730|NOP2/Sun domain family, member 7##BC036568|NSUN7|79730|NOP2/Sun domain family, member 7##AK024063|NSUN7|79730|NOP2/Sun domain family, member 7##AK304206|RBM47|54502|RNA binding motif protein 47##BC088372|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##BC027946|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK304247|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##AK226179|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_001166050|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004307|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_173075|APBB2|323|amyloid beta (A4) precursor protein-binding, family B, member 2##NM_004181|UCHL1|7345|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)	0.110286	0.552377	CTCF.p2:-73:0.552
chr6	37466004	37466184	reg1015142.p2	3.771	+	AB385274 TSC_hg19_v1_chr6_+_37403469	-62657	+	TSC_hg19_v1_chr6_+_37401050 AK292564	-65039	+	TSC_hg19_v1_chr6_+_37400996 NM_015050 BC031890 D43949	-65148	+	TSC_hg19_v1_chr6_-_37467667 BC003515 BC108655	1558	-	TSC_hg19_v1_chr6_-_37467691 BC104835 AF161383 NM_138493	1602	-	TSC_hg19_v1_chr6_-_37665660 AF478693 NM_153487	199612	-	AK292564|FTSJD2|23070|FtsJ methyltransferase domain containing 2##NM_015050|FTSJD2|23070|FtsJ methyltransferase domain containing 2##BC031890|FTSJD2|23070|FtsJ methyltransferase domain containing 2##D43949|FTSJD2|23070|FtsJ methyltransferase domain containing 2##BC003515|CCDC167|154467|coiled-coil domain containing 167##BC108655|CCDC167|154467|coiled-coil domain containing 167##BC104835|CCDC167|154467|coiled-coil domain containing 167##AF161383|CCDC167|154467|coiled-coil domain containing 167##NM_138493|CCDC167|154467|coiled-coil domain containing 167##AF478693|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1##NM_153487|MDGA1|266727|MAM domain containing glycosylphosphatidylinositol anchor 1	0.0	0.0	
chr17	26391129	26391253	reg1011976.p2	3.770	+	AB384832 AK024686 TSC_hg19_v1_chr17_+_26370066	-21190	+	TSC_hg19_v1_chr17_+_26369661 AK315315 AF197898 NM_016231 AF180819	-21538	+	TSC_hg19_v1_chr17_-_26220392 AK055808 AK310926 NM_001076680	-170800	-	NM_014573 TSC_hg19_v1_chr17_+_26646214 L19183 AK299511 AK307678 BC017362 BC091504 AK293331	255002	+	TSC_hg19_v1_chr17_-_26662482 AY224601 BC038094 AK297769 BC002640 NM_174887 AK309232	271295	-	NM_021137 TSC_hg19_v1_chr17_+_26662786 BC003694 AK300584 AK312387 BC001643 BC001949 BC006208 M80783	271512	+	AK024686|NLK|51701|nemo-like kinase##AK315315|NLK|51701|nemo-like kinase##AF197898|NLK|51701|nemo-like kinase##NM_016231|NLK|51701|nemo-like kinase##AF180819|NLK|51701|nemo-like kinase##AK055808|C17orf108|201229|chromosome 17 open reading frame 108##NM_001076680|C17orf108|201229|chromosome 17 open reading frame 108##NM_014573|TMEM97|27346|transmembrane protein 97##L19183|TMEM97|27346|transmembrane protein 97##AK299511|TMEM97|27346|transmembrane protein 97##AK307678|TMEM97|27346|transmembrane protein 97##BC017362|TMEM97|27346|transmembrane protein 97##BC091504|TMEM97|27346|transmembrane protein 97##AK293331|TMEM97|27346|transmembrane protein 97##AY224601|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC038094|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##BC002640|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_174887|IFT20|90410|intraflagellar transport 20 homolog (Chlamydomonas)##NM_021137|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC003694|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK300584|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##AK312387|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001643|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##BC001949|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)##M80783|TNFAIP1|7126|tumor necrosis factor, alpha-induced protein 1 (endothelial)	0.999896	0.0	
chr18	19322167	19322311	reg1014710.p2	3.770	+	AY149908 BC110581 BC110582 NM_020774	-695	+	TSC_hg19_v1_chr18_+_19321288 AY147849	-956	+	TSC_hg19_v1_chr18_-_19284743 NM_138340	-37488	-	CR749635 TSC_hg19_v1_chr18_+_19353654	31408	+	AK123079 TSC_hg19_v1_chr18_-_19749029	426747	-	X95701 BC027891 NM_005257 TSC_hg19_v1_chr18_+_19749549	427237	+	AY149908|MIB1|57534|mindbomb homolog 1 (Drosophila)##BC110581|MIB1|57534|mindbomb homolog 1 (Drosophila)##BC110582|MIB1|57534|mindbomb homolog 1 (Drosophila)##NM_020774|MIB1|57534|mindbomb homolog 1 (Drosophila)##AY147849|MIB1|57534|mindbomb homolog 1 (Drosophila)##NM_138340|ABHD3|171586|abhydrolase domain containing 3##CR749635|MIB1|57534|mindbomb homolog 1 (Drosophila)##AK123079|LOC100128893|100128893|uncharacterized LOC100128893##X95701|GATA6|2627|GATA binding protein 6##BC027891|GATA6|2627|GATA binding protein 6##NM_005257|GATA6|2627|GATA binding protein 6	0.998388	0.0	denovo_WM_7:6:0.229	denovo_WM_7:7:0.229	denovo_WM_7:8:0.229	denovo_WM_7:9:0.229
chr19	18279076	18279207	reg1010695.p1	3.770	+	TSC_hg19_v1_chr19_+_18264004 BC070082 NM_005027 BC090249	-15109	+	BC063240 TSC_hg19_v1_chr19_+_18263972	-15160	+	TSC_hg19_v1_chr19_+_18208608 AB527184 NM_015016 AB011133	-70532	+	NM_006332 TSC_hg19_v1_chr19_+_18284600 AB049659 AK291551	5450	+	TSC_hg19_v1_chr19_+_18284622 BC021136 BC031020 AF097362	5480	+	TSC_hg19_v1_chr19_+_18284633 AB590284 CU676848 CU689078 DQ884410 DQ892016 DQ895206	5500	+	BC070082|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_005027|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##BC090249|PIK3R2|5296|phosphoinositide-3-kinase, regulatory subunit 2 (beta)##NM_015016|MAST3|23031|microtubule associated serine/threonine kinase 3##AB011133|MAST3|23031|microtubule associated serine/threonine kinase 3##NM_006332|IFI30|10437|interferon, gamma-inducible protein 30##AB049659|IFI30|10437|interferon, gamma-inducible protein 30##AK291551|IFI30|10437|interferon, gamma-inducible protein 30##BC021136|IFI30|10437|interferon, gamma-inducible protein 30##BC031020|IFI30|10437|interferon, gamma-inducible protein 30##DQ884410|IFI30|10437|interferon, gamma-inducible protein 30##DQ892016|IFI30|10437|interferon, gamma-inducible protein 30##DQ895206|IFI30|10437|interferon, gamma-inducible protein 30	0.0	0.990842	CTCF.p2:13:0.991
chr2	47642306	47642466	reg1016010.p2	3.770	+	TSC_hg19_v1_chr2_+_47630294 AK223284 AK296831 AK297763 BX649122 BC021566 AK311330 DQ892558 DQ895772 AB489153 BC001122 U03911 CU692370 DQ648894	-12069	+	TSC_hg19_v1_chr2_+_47630289 BC012599 NM_000251 U04045 AK222860 L47574 L47575 L47576 L47577 L47578 L47579 L47580 L47581 L47582 L47583	-12118	+	TSC_hg19_v1_chr2_+_47630218 AK304496	-12182	+	AF287302 NM_022055 BC047749	155097	-	TSC_hg19_v1_chr2_-_47918421 D28393	276033	-	BC071594 NM_000179 TSC_hg19_v1_chr2_+_48010283 U28946 D89646 BC104665 U54777 BC004246 AK293921 AK308392 AB590153 DQ892898	367910	+	AK223284|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK296831|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK297763|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BX649122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC021566|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK311330|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ892558|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ895772|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC001122|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U03911|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##DQ648894|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##BC012599|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##NM_000251|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##U04045|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK222860|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47574|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47575|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47576|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47577|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47578|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47579|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47580|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47581|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47582|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##L47583|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AK304496|MSH2|4436|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)##AF287302|KCNK12|56660|potassium channel, subfamily K, member 12##NM_022055|KCNK12|56660|potassium channel, subfamily K, member 12##BC047749|KCNK12|56660|potassium channel, subfamily K, member 12##D28393|RPL18A|6142|ribosomal protein L18a##BC071594|MSH6|2956|mutS homolog 6 (E. coli)##NM_000179|MSH6|2956|mutS homolog 6 (E. coli)##U28946|MSH6|2956|mutS homolog 6 (E. coli)##D89646|MSH6|2956|mutS homolog 6 (E. coli)##BC104665|MSH6|2956|mutS homolog 6 (E. coli)##U54777|MSH6|2956|mutS homolog 6 (E. coli)##BC004246|MSH6|2956|mutS homolog 6 (E. coli)##AK293921|MSH6|2956|mutS homolog 6 (E. coli)##AK308392|MSH6|2956|mutS homolog 6 (E. coli)##DQ892898|MSH6|2956|mutS homolog 6 (E. coli)	0.998307	0.0	
chr3	191051927	191052027	reg1015727.p1	3.770	+	AK090630 AX746546 NM_198152	-3653	-	AJ416916 AJ557013 NM_174908 NM_178335 TSC_hg19_v1_chr3_+_191047209 BC065004 CU687992	-4811	+	AY398681 AY573933 BC128106 BC128107 NM_198184	-121656	+	AY858112 NM_001083308	126974	+	AK125307 NM_021032 TSC_hg19_v1_chr3_-_192126847	1074866	-	AK312513 TSC_hg19_v1_chr3_-_192445344 BC022524 NM_004113	1393388	-	AK090630|UTS2D|257313|urotensin 2 domain containing##NM_198152|UTS2D|257313|urotensin 2 domain containing##AJ416916|CCDC50|152137|coiled-coil domain containing 50##AJ557013|CCDC50|152137|coiled-coil domain containing 50##NM_174908|CCDC50|152137|coiled-coil domain containing 50##NM_178335|CCDC50|152137|coiled-coil domain containing 50##BC065004|CCDC50|152137|coiled-coil domain containing 50##AY398681|OSTN|344901|osteocrin##AY573933|OSTN|344901|osteocrin##BC128106|OSTN|344901|osteocrin##BC128107|OSTN|344901|osteocrin##NM_198184|OSTN|344901|osteocrin##AY858112|PYDC2|152138|pyrin domain containing 2##NM_001083308|PYDC2|152138|pyrin domain containing 2##AK125307|FGF12|2257|fibroblast growth factor 12##NM_021032|FGF12|2257|fibroblast growth factor 12##AK312513|FGF12|2257|fibroblast growth factor 12##BC022524|FGF12|2257|fibroblast growth factor 12##NM_004113|FGF12|2257|fibroblast growth factor 12	0.0	0.0	
chr4	87843688	87843774	reg1015241.p1	3.770	+	BC016746 BC063410 NM_144645	-30171	-	AJ583502 BC107051 BC107052 EF437223 NM_197965	-73390	-	TSC_hg19_v1_chr4_+_87515468 AK056151 NM_006264 NM_080683 NM_080684 NM_080685 BC139915 U12132 U12129 U12130	-328258	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	12484	+	TSC_hg19_v1_chr4_+_87857481 L13743	13752	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	84590	+	BC016746|C4orf36|132989|chromosome 4 open reading frame 36##BC063410|C4orf36|132989|chromosome 4 open reading frame 36##NM_144645|C4orf36|132989|chromosome 4 open reading frame 36##AJ583502|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107051|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##BC107052|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##EF437223|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##NM_197965|SLC10A6|345274|solute carrier family 10 (sodium/bile acid cotransporter family), member 6##AK056151|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_006264|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080683|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080684|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##NM_080685|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##BC139915|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12132|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##U12129|PTPN13|5783|protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase)##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1	0.0	0.976132	CTCF.p2:-24:0.976
chr6_mcf_hap5	1866298	1866427	reg1013731.p1	3.770	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.992671	0.0	denovo_WM_7:32:0.823
chr9	113014486	113014617	reg1019737.p1	3.770	+	NM_001012993	-44139	-	NM_001136562 AK300427	-126759	+	TSC_hg19_v1_chr9_+_112810975 AK057098 AK304311	-203588	+	AF065241 AF276919 CR407665 AF313911 AY004872 AF085844 BC003377 J04026 BC054866 TSC_hg19_v1_chr9_-_113018788 X77584	4201	-	TSC_hg19_v1_chr9_-_113018817 BX647247 D28376 AK289508	4274	-	TSC_hg19_v1_chr9_-_113018882 NM_001244938 NM_003329	4348	-	NM_001012993|C9orf152|401546|chromosome 9 open reading frame 152##NM_001136562|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK300427|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK057098|AKAP2|11217|A kinase (PRKA) anchor protein 2##AK304311|AKAP2|11217|A kinase (PRKA) anchor protein 2##AF065241|TXN|7295|thioredoxin##AF276919|TXN|7295|thioredoxin##CR407665|TXN|7295|thioredoxin##AF313911|TXN|7295|thioredoxin##AY004872|TXN|7295|thioredoxin##AF085844|TXN|7295|thioredoxin##BC003377|TXN|7295|thioredoxin##J04026|TXN|7295|thioredoxin##BC054866|TXN|7295|thioredoxin##X77584|TXN|7295|thioredoxin##BX647247|TXN|7295|thioredoxin##D28376|TXN|7295|thioredoxin##AK289508|TXN|7295|thioredoxin##NM_001244938|TXN|7295|thioredoxin##NM_003329|TXN|7295|thioredoxin	0.999625	0.0	
chr10	13248695	13248798	reg1014886.p1	3.769	+	TSC_hg19_v1_chr10_+_13203578 NM_018518 NM_182751 AK292701 AK055695 BC101727 AB042719 AL136840 BC143490	-45178	+	TSC_hg19_v1_chr10_+_13142135 NM_001008211 NM_001008212 NM_001008213 NM_021980 AK316171 AK303715 BC013876 BC032762 AF061034 AF420371 AF420372 AF420373	-106601	+	AB528751 AM393288 AL136562 TSC_hg19_v1_chr10_-_13043714 BC051334 NM_031455	-205047	-	BC018068 NM_145314	27581	-	NM_001037537	92999	-	TSC_hg19_v1_chr10_-_13342061 CR542055 DQ891007 DQ894185	93303	-	NM_018518|MCM10|55388|minichromosome maintenance complex component 10##NM_182751|MCM10|55388|minichromosome maintenance complex component 10##AK292701|MCM10|55388|minichromosome maintenance complex component 10##AK055695|MCM10|55388|minichromosome maintenance complex component 10##BC101727|MCM10|55388|minichromosome maintenance complex component 10##AB042719|MCM10|55388|minichromosome maintenance complex component 10##AL136840|MCM10|55388|minichromosome maintenance complex component 10##BC143490|MCM10|55388|minichromosome maintenance complex component 10##NM_001008211|OPTN|10133|optineurin##NM_001008212|OPTN|10133|optineurin##NM_001008213|OPTN|10133|optineurin##NM_021980|OPTN|10133|optineurin##AK316171|OPTN|10133|optineurin##AK303715|OPTN|10133|optineurin##BC013876|OPTN|10133|optineurin##BC032762|OPTN|10133|optineurin##AF061034|OPTN|10133|optineurin##AF420371|OPTN|10133|optineurin##AF420372|OPTN|10133|optineurin##AF420373|OPTN|10133|optineurin##AM393288|CCDC3|83643|coiled-coil domain containing 3##AL136562|CCDC3|83643|coiled-coil domain containing 3##BC051334|CCDC3|83643|coiled-coil domain containing 3##NM_031455|CCDC3|83643|coiled-coil domain containing 3##BC018068|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_145314|UCMA|221044|upper zone of growth plate and cartilage matrix associated##NM_001037537|PHYH|5264|phytanoyl-CoA 2-hydroxylase##CR542055|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ891007|PHYH|5264|phytanoyl-CoA 2-hydroxylase##DQ894185|PHYH|5264|phytanoyl-CoA 2-hydroxylase	1.273951	0.984972	CTCF.p2:0:0.985	denovo_WM_7:60:0.717	denovo_WM_7:-63:0.203
chr10	9139600	9139710	reg1015818.p1	3.769	+	TSC_hg19_v1_chr10_+_8097355 X55122 X58072 X55037 M69106 AB463676 AM392571 AM392688 CU678358	-1042172	+	BC003070 AK298213 TSC_hg19_v1_chr10_+_8096779	-1042880	+	TSC_hg19_v1_chr10_+_8096650 BC006793 NM_001002295 NM_002051	-1043006	+	TSC_hg19_v1_chr10_+_11047254 NM_001025077	1907602	+	TSC_hg19_v1_chr10_+_11047290 AF090693 AK297380	1907630	+	AK299548 TSC_hg19_v1_chr10_+_11047339	1907685	+	X55122|GATA3|2625|GATA binding protein 3##X58072|GATA3|2625|GATA binding protein 3##X55037|GATA3|2625|GATA binding protein 3##M69106|GATA3|2625|GATA binding protein 3##AM392571|GATA3|2625|GATA binding protein 3##AM392688|GATA3|2625|GATA binding protein 3##BC003070|GATA3|2625|GATA binding protein 3##AK298213|GATA3|2625|GATA binding protein 3##BC006793|GATA3|2625|GATA binding protein 3##NM_001002295|GATA3|2625|GATA binding protein 3##NM_002051|GATA3|2625|GATA binding protein 3##NM_001025077|CELF2|10659|CUGBP, Elav-like family member 2##AF090693|CELF2|10659|CUGBP, Elav-like family member 2##AK297380|CELF2|10659|CUGBP, Elav-like family member 2##AK299548|CELF2|10659|CUGBP, Elav-like family member 2	0.996729	0.0	denovo_WM_7:47:0.470	denovo_WM_7:48:0.527
chr1	112024306	112024474	reg1010987.p2	3.769	+	TSC_hg19_v1_chr1_+_112016601 BC017973 NM_174896	-7792	+	TSC_hg19_v1_chr1_+_111992132 X60221	-32236	+	BC005960 TSC_hg19_v1_chr1_+_111992113 AY871272 AK313541 AK223018	-32274	+	NM_000677 NM_020683	22352	-	BC041707 BC064411 NM_001081976	82189	-	TSC_hg19_v1_chr1_+_112162449 NM_001010935 NM_002884 BC014086	138077	+	BC017973|C1orf162|128346|chromosome 1 open reading frame 162##NM_174896|C1orf162|128346|chromosome 1 open reading frame 162##X60221|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##BC005960|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AY871272|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK313541|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##AK223018|ATP5F1|515|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1##NM_000677|ADORA3|140|adenosine A3 receptor##NM_020683|ADORA3|140|adenosine A3 receptor##BC041707|ADORA3|140|adenosine A3 receptor##BC064411|ADORA3|140|adenosine A3 receptor##NM_001081976|ADORA3|140|adenosine A3 receptor##NM_001010935|RAP1A|5906|RAP1A, member of RAS oncogene family##NM_002884|RAP1A|5906|RAP1A, member of RAS oncogene family##BC014086|RAP1A|5906|RAP1A, member of RAS oncogene family	1.998837	0.0	denovo_WM_7:-57:0.845	denovo_WM_7:-72:0.740	denovo_WM_7:-73:0.243
chr1	193012351	193012435	reg1010343.p2	3.769	+	BC042755 BC044742 NM_002923 TSC_hg19_v1_chr1_+_192778168 AK313668 BC007049 L13463 AY971351 AB528517 AF493926 BT007065 CR457410 CU675517 DQ893178 DQ896478	-234209	+	NM_002927 NM_144766 AF030107 BC016667	-407109	+	NM_002922 AK303138 AK315607 TSC_hg19_v1_chr1_+_192544902 AK093544 BC015510 X73427 DQ890651 DQ893831 AB590399 AF493925 BT006668	-467485	+	BT006790 CU692976 AB528990 AF151828 AK225794 BC015521 TSC_hg19_v1_chr1_-_193028470 AK314445 AK316064 AK024751	16044	-	BC025369 TSC_hg19_v1_chr1_-_193028505 AK296487 AF147717 NM_001199261 NM_001199262 NM_001199263 NM_015984	16113	-	TSC_hg19_v1_chr1_-_193028528 AF157320	16138	-	BC042755|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC044742|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002923|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AK313668|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BC007049|RGS2|5997|regulator of G-protein signaling 2, 24kDa##L13463|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AY971351|RGS2|5997|regulator of G-protein signaling 2, 24kDa##AF493926|RGS2|5997|regulator of G-protein signaling 2, 24kDa##BT007065|RGS2|5997|regulator of G-protein signaling 2, 24kDa##CR457410|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ893178|RGS2|5997|regulator of G-protein signaling 2, 24kDa##DQ896478|RGS2|5997|regulator of G-protein signaling 2, 24kDa##NM_002927|RGS13|6003|regulator of G-protein signaling 13##NM_144766|RGS13|6003|regulator of G-protein signaling 13##AF030107|RGS13|6003|regulator of G-protein signaling 13##BC016667|RGS13|6003|regulator of G-protein signaling 13##NM_002922|RGS1|5996|regulator of G-protein signaling 1##AK303138|RGS1|5996|regulator of G-protein signaling 1##AK315607|RGS1|5996|regulator of G-protein signaling 1##AK093544|RGS1|5996|regulator of G-protein signaling 1##BC015510|RGS1|5996|regulator of G-protein signaling 1##X73427|RGS1|5996|regulator of G-protein signaling 1##DQ890651|RGS1|5996|regulator of G-protein signaling 1##DQ893831|RGS1|5996|regulator of G-protein signaling 1##AF493925|RGS1|5996|regulator of G-protein signaling 1##BT006668|RGS1|5996|regulator of G-protein signaling 1##BT006790|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF151828|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK225794|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC015521|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK314445|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK316064|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK024751|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##BC025369|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AK296487|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF147717|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_001199261|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_001199262|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_001199263|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##NM_015984|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5##AF157320|UCHL5|51377|ubiquitin carboxyl-terminal hydrolase L5	1.057181	0.0	
chr12	54720624	54720762	reg1011855.p2	3.769	+	TSC_hg19_v1_chr12_+_54718927 AK223188 BC002849 AB463530 CU678240	-1756	+	TSC_hg19_v1_chr12_+_54718925 AB047848 AF086911	-1768	+	TSC_hg19_v1_chr12_+_54718922 AK293377 AK295325	-1773	+	AF237762 AF282693 TSC_hg19_v1_chr12_-_54758271 BC020614 NM_020370 AK290394	37557	-	AB528580 CR457327 TSC_hg19_v1_chr12_-_54778374	57643	-	AK296564 TSC_hg19_v1_chr12_-_54778485 AF304052 NM_015481	57781	-	AK223188|COPZ1|22818|coatomer protein complex, subunit zeta 1##BC002849|COPZ1|22818|coatomer protein complex, subunit zeta 1##AB047848|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF086911|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK293377|COPZ1|22818|coatomer protein complex, subunit zeta 1##AK295325|COPZ1|22818|coatomer protein complex, subunit zeta 1##AF237762|GPR84|53831|G protein-coupled receptor 84##AF282693|GPR84|53831|G protein-coupled receptor 84##BC020614|GPR84|53831|G protein-coupled receptor 84##NM_020370|GPR84|53831|G protein-coupled receptor 84##AK290394|GPR84|53831|G protein-coupled receptor 84##CR457327|ZNF385A|25946|zinc finger protein 385A##AK296564|ZNF385A|25946|zinc finger protein 385A##AF304052|ZNF385A|25946|zinc finger protein 385A##NM_015481|ZNF385A|25946|zinc finger protein 385A	1.982178	0.0	denovo_WM_7:60:0.210	denovo_WM_7:82:0.216
chr14	77567477	77567571	reg1013957.p2	3.769	+	TSC_hg19_v1_chr14_+_77564625 NM_033426 AK315124 BC037300 AK096603 AL834514	-2879	+	AK124327 TSC_hg19_v1_chr14_-_77542533	-24991	-	TSC_hg19_v1_chr14_-_77495043 NM_024496 BC108292	-72464	-	BC117676 TSC_hg19_v1_chr14_-_77608072	40491	-	AK294840 TSC_hg19_v1_chr14_-_77608135 AK095612 NM_174976	40611	-	TSC_hg19_v1_chr14_+_77648082 NM_020431	80568	+	NM_033426|KIAA1737|85457|KIAA1737##AK315124|KIAA1737|85457|KIAA1737##BC037300|KIAA1737|85457|KIAA1737##AK096603|KIAA1737|85457|KIAA1737##AL834514|KIAA1737|85457|KIAA1737##NM_024496|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC108292|IRF2BPL|64207|interferon regulatory factor 2 binding protein-like##BC117676|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK294840|ZDHHC22|283576|zinc finger, DHHC-type containing 22##AK095612|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_174976|ZDHHC22|283576|zinc finger, DHHC-type containing 22##NM_020431|TMEM63C|57156|transmembrane protein 63C	0.0	0.0	
chr18	48680312	48680397	reg1014893.p1	3.769	+	TSC_hg19_v1_chr18_+_48556613 AK290770 BC002379	-123748	+	TSC_hg19_v1_chr18_+_48556582 NM_005359	-123820	+	TSC_hg19_v1_chr18_+_48494409 AK024822 AF308695 AK303027 AK310911 BC014624 AK223507 AB029151	-185933	+	AB463885 BC032952 BC153820 TSC_hg19_v1_chr18_-_48723317 AK096190	42872	-	AY950679 TSC_hg19_v1_chr18_-_48723734	43358	-	TSC_hg19_v1_chr18_-_48724033 NM_016626	43686	-	AK290770|SMAD4|4089|SMAD family member 4##BC002379|SMAD4|4089|SMAD family member 4##NM_005359|SMAD4|4089|SMAD family member 4##AK024822|ELAC1|55520|elaC homolog 1 (E. coli)##AF308695|ELAC1|55520|elaC homolog 1 (E. coli)##AK310911|ELAC1|55520|elaC homolog 1 (E. coli)##BC014624|ELAC1|55520|elaC homolog 1 (E. coli)##AK223507|ELAC1|55520|elaC homolog 1 (E. coli)##AB029151|ELAC1|55520|elaC homolog 1 (E. coli)##BC032952|MEX3C|51320|mex-3 homolog C (C. elegans)##BC153820|MEX3C|51320|mex-3 homolog C (C. elegans)##AK096190|MEX3C|51320|mex-3 homolog C (C. elegans)##AY950679|MEX3C|51320|mex-3 homolog C (C. elegans)##NM_016626|MEX3C|51320|mex-3 homolog C (C. elegans)	0.0	0.0	
chr19	10353492	10353593	reg1007920.p1	3.769	+	NM_004230 TSC_hg19_v1_chr19_-_10342058	-11536	-	TSC_hg19_v1_chr19_-_10305646 BC126227 BC144093 NM_001130823 NM_001379 AF180682 X63692	-47815	-	TSC_hg19_v1_chr19_-_10305600 BC092517	-47937	-	TSC_hg19_v1_chr19_+_10362680 NM_015956 NM_146387 NM_146388 AF132962 BC000756	9105	+	TSC_hg19_v1_chr19_+_10362889 BC009858	9356	+	TSC_hg19_v1_chr19_+_10362916 AB049635 AY007152	9450	+	NM_004230|S1PR2|9294|sphingosine-1-phosphate receptor 2##BC126227|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC144093|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001130823|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_001379|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##AF180682|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##X63692|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##BC092517|DNMT1|1786|DNA (cytosine-5-)-methyltransferase 1##NM_015956|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146387|MRPL4|51073|mitochondrial ribosomal protein L4##NM_146388|MRPL4|51073|mitochondrial ribosomal protein L4##AF132962|MRPL4|51073|mitochondrial ribosomal protein L4##BC000756|MRPL4|51073|mitochondrial ribosomal protein L4##BC009858|MRPL4|51073|mitochondrial ribosomal protein L4##AB049635|MRPL4|51073|mitochondrial ribosomal protein L4##AY007152|MRPL4|51073|mitochondrial ribosomal protein L4	0.0	0.0	
chrX	22604132	22604265	reg1016921.p1	3.769	+	GQ355336 NM_152577 AK098601 BC074910 BC126190 BC126192 HQ258412 HQ258552	-313130	+	NM_000444 U87284 AD000712 AK298030 BC105057 BC105059 U75645 U60475	-553173	+	NM_004595 TSC_hg19_v1_chrX_+_21958824 AD001528 AK293455 AK313834 BC009898 BC085621 EU176347	-645372	+	AY039237 NM_182699 BC067878 BC051703	413886	+	AK298796 NM_173495 AK054858 BC121061	748862	+	TSC_hg19_v1_chrX_+_23685615 BC016770	1081425	+	GQ355336|ZNF645|158506|zinc finger protein 645##NM_152577|ZNF645|158506|zinc finger protein 645##AK098601|ZNF645|158506|zinc finger protein 645##BC074910|ZNF645|158506|zinc finger protein 645##BC126190|ZNF645|158506|zinc finger protein 645##BC126192|ZNF645|158506|zinc finger protein 645##HQ258412|ZNF645|158506|zinc finger protein 645##HQ258552|ZNF645|158506|zinc finger protein 645##NM_000444|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U87284|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AD000712|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##AK298030|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105057|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##BC105059|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U75645|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##U60475|PHEX|5251|phosphate regulating endopeptidase homolog, X-linked##NM_004595|SMS|6611|spermine synthase##AD001528|SMS|6611|spermine synthase##AK293455|SMS|6611|spermine synthase##AK313834|SMS|6611|spermine synthase##BC009898|SMS|6611|spermine synthase##BC085621|SMS|6611|spermine synthase##EU176347|SMS|6611|spermine synthase##AY039237|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##NM_182699|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC067878|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##BC051703|DDX53|168400|DEAD (Asp-Glu-Ala-Asp) box polypeptide 53##AK298796|PTCHD1|139411|patched domain containing 1##NM_173495|PTCHD1|139411|patched domain containing 1##AK054858|PTCHD1|139411|patched domain containing 1##BC121061|PTCHD1|139411|patched domain containing 1##BC016770|PRDX4|10549|peroxiredoxin 4	0.982809	0.0	denovo_WM_7:51:0.485	denovo_WM_7:52:0.485
chr10	3214668	3214741	reg1011357.p1	3.768	+	TSC_hg19_v1_chr10_+_3160984 M64784	-53719	+	BC021698 TSC_hg19_v1_chr10_+_3151628	-63092	+	AK092597 AX747622 NM_001242339	-103886	+	BC045577 TSC_hg19_v1_chr10_-_3214936	221	-	CU678866 TSC_hg19_v1_chr10_-_3214975 AB384562 BC005025 AK225084 AK293788 AK315117 AK294865 AK299464 AK303406 BC095422 BX649017 AF061243	266	-	TSC_hg19_v1_chr10_-_3214979 BC111987 BC113369 AK002061 NM_001242307 NM_001242309 NM_014889	301	-	M64784|PFKP|5214|phosphofructokinase, platelet##BC021698|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet##BC045577|PITRM1|10531|pitrilysin metallopeptidase 1##BC005025|PITRM1|10531|pitrilysin metallopeptidase 1##AK225084|PITRM1|10531|pitrilysin metallopeptidase 1##AK293788|PITRM1|10531|pitrilysin metallopeptidase 1##AK315117|PITRM1|10531|pitrilysin metallopeptidase 1##AK294865|PITRM1|10531|pitrilysin metallopeptidase 1##AK299464|PITRM1|10531|pitrilysin metallopeptidase 1##AK303406|PITRM1|10531|pitrilysin metallopeptidase 1##BC095422|PITRM1|10531|pitrilysin metallopeptidase 1##BX649017|PITRM1|10531|pitrilysin metallopeptidase 1##AF061243|PITRM1|10531|pitrilysin metallopeptidase 1##BC111987|PITRM1|10531|pitrilysin metallopeptidase 1##BC113369|PITRM1|10531|pitrilysin metallopeptidase 1##AK002061|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242307|PITRM1|10531|pitrilysin metallopeptidase 1##NM_001242309|PITRM1|10531|pitrilysin metallopeptidase 1##NM_014889|PITRM1|10531|pitrilysin metallopeptidase 1	0.0	0.0	
chr1	153553075	153553192	reg1015651.p1	3.768	+	BC002829 NM_005978	-14828	-	BC012893 NM_002960 Z18948	-31408	-	BC000838 BC024974 AK292083 BC016300 NM_002961 NM_019554 TSC_hg19_v1_chr1_-_153518283	-34859	-	BC095462 U92985 TSC_hg19_v1_chr1_-_153581484 AK290804	28332	-	TSC_hg19_v1_chr1_-_153585546 BC010541 NM_080388 AY221961 BC019099 AY762098	32431	-	AY007220 TSC_hg19_v1_chr1_-_153588799 NM_020672	35665	-	BC002829|S100A2|6273|S100 calcium binding protein A2##NM_005978|S100A2|6273|S100 calcium binding protein A2##BC012893|S100A3|6274|S100 calcium binding protein A3##NM_002960|S100A3|6274|S100 calcium binding protein A3##Z18948|S100A3|6274|S100 calcium binding protein A3##BC000838|S100A4|6275|S100 calcium binding protein A4##BC024974|S100A4|6275|S100 calcium binding protein A4##AK292083|S100A4|6275|S100 calcium binding protein A4##BC016300|S100A4|6275|S100 calcium binding protein A4##NM_002961|S100A4|6275|S100 calcium binding protein A4##NM_019554|S100A4|6275|S100 calcium binding protein A4##BC095462|S100A16|140576|S100 calcium binding protein A16##U92985|S100A16|140576|S100 calcium binding protein A16##AK290804|S100A16|140576|S100 calcium binding protein A16##BC010541|S100A16|140576|S100 calcium binding protein A16##NM_080388|S100A16|140576|S100 calcium binding protein A16##AY221961|S100A16|140576|S100 calcium binding protein A16##BC019099|S100A16|140576|S100 calcium binding protein A16##AY762098|S100A16|140576|S100 calcium binding protein A16##AY007220|S100A14|57402|S100 calcium binding protein A14##NM_020672|S100A14|57402|S100 calcium binding protein A14	1.995252	0.0	
chr14	55090136	55090273	reg1013844.p1	3.768	+	CU691270 TSC_hg19_v1_chr14_+_55034639 AK024652 BC121173 BC121174	-55568	+	NM_001161576 NM_015589 BC057838 TSC_hg19_v1_chr14_+_55034359	-55860	+	AK315318 AK289478 TSC_hg19_v1_chr14_+_54976623 NM_006568 BC015063 U66469 CU677207 EU832831 GQ129438	-113593	+	TSC_hg19_v1_chr14_+_55168831 AB028976	78685	+	NM_001161577 BC021726	131323	+	AY137463 AY137464 AY137465 Z16418 S44049 CR536551 DQ892998 DQ896245 S43856 S44053 TSC_hg19_v1_chr14_-_55369545 Z29433 Z29434 U66095 BC025415 U19523 U66097 NM_000161 NM_001024024 NM_001024070 NM_001024071	279210	-	AK024652|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121173|SAMD4A|23034|sterile alpha motif domain containing 4A##BC121174|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_001161576|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_015589|SAMD4A|23034|sterile alpha motif domain containing 4A##BC057838|SAMD4A|23034|sterile alpha motif domain containing 4A##AK315318|CGRRF1|10668|cell growth regulator with ring finger domain 1##AK289478|CGRRF1|10668|cell growth regulator with ring finger domain 1##NM_006568|CGRRF1|10668|cell growth regulator with ring finger domain 1##BC015063|CGRRF1|10668|cell growth regulator with ring finger domain 1##U66469|CGRRF1|10668|cell growth regulator with ring finger domain 1##EU832831|CGRRF1|10668|cell growth regulator with ring finger domain 1##GQ129438|CGRRF1|10668|cell growth regulator with ring finger domain 1##AB028976|SAMD4A|23034|sterile alpha motif domain containing 4A##NM_001161577|SAMD4A|23034|sterile alpha motif domain containing 4A##BC021726|SAMD4A|23034|sterile alpha motif domain containing 4A##AY137463|GCH1|2643|GTP cyclohydrolase 1##AY137464|GCH1|2643|GTP cyclohydrolase 1##AY137465|GCH1|2643|GTP cyclohydrolase 1##Z16418|GCH1|2643|GTP cyclohydrolase 1##S44049|GCH1|2643|GTP cyclohydrolase 1##CR536551|GCH1|2643|GTP cyclohydrolase 1##DQ892998|GCH1|2643|GTP cyclohydrolase 1##DQ896245|GCH1|2643|GTP cyclohydrolase 1##S43856|GCH1|2643|GTP cyclohydrolase 1##S44053|GCH1|2643|GTP cyclohydrolase 1##Z29433|GCH1|2643|GTP cyclohydrolase 1##Z29434|GCH1|2643|GTP cyclohydrolase 1##U66095|GCH1|2643|GTP cyclohydrolase 1##BC025415|GCH1|2643|GTP cyclohydrolase 1##U19523|GCH1|2643|GTP cyclohydrolase 1##U66097|GCH1|2643|GTP cyclohydrolase 1##NM_000161|GCH1|2643|GTP cyclohydrolase 1##NM_001024024|GCH1|2643|GTP cyclohydrolase 1##NM_001024070|GCH1|2643|GTP cyclohydrolase 1##NM_001024071|GCH1|2643|GTP cyclohydrolase 1	1.991701	0.0	denovo_WM_7:4:0.860	denovo_WM_7:19:0.727	denovo_WM_7:20:0.270
chr20	43584110	43584212	reg1016446.p1	3.768	+	TSC_hg19_v1_chr20_+_43538705 NM_001124756 EU190483	-45443	+	TSC_hg19_v1_chr20_+_43514390 AL834170 AB209759	-69791	+	TSC_hg19_v1_chr20_+_43514345 NM_003404 NM_139323 AK292717 BC001359	-69817	+	AB590243 BT020008 BT020009 CR456765 CU677113 DQ891151 EU176561 TSC_hg19_v1_chr20_-_43589038 AK129538 U58970 BC014907 AK222952 BC001763 BC007423 AK000594 BC006573 AB085681 AK302128 AK307655 NM_006809	4893	-	NM_006282 TSC_hg19_v1_chr20_+_43595152 AB209315 BC029511 AK309169 AK225326 BC005231 BC015332 BC038850 CR933633 BC093768	10985	+	AK315238 U60207 TSC_hg19_v1_chr20_+_43595176 BC058916 BC039023 U18297	11030	+	NM_001124756|PABPC1L|80336|poly(A) binding protein, cytoplasmic 1-like##EU190483|PABPC1L|80336|poly(A) binding protein, cytoplasmic 1-like##AL834170|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##AB209759|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##NM_003404|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##NM_139323|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##AK292717|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##BC001359|YWHAB|7529|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide##BT020008|TOMM34|10953|translocase of outer mitochondrial membrane 34##BT020009|TOMM34|10953|translocase of outer mitochondrial membrane 34##CR456765|TOMM34|10953|translocase of outer mitochondrial membrane 34##DQ891151|TOMM34|10953|translocase of outer mitochondrial membrane 34##EU176561|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK129538|TOMM34|10953|translocase of outer mitochondrial membrane 34##U58970|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC014907|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK222952|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC001763|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC007423|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK000594|TOMM34|10953|translocase of outer mitochondrial membrane 34##BC006573|TOMM34|10953|translocase of outer mitochondrial membrane 34##AB085681|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK302128|TOMM34|10953|translocase of outer mitochondrial membrane 34##AK307655|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006809|TOMM34|10953|translocase of outer mitochondrial membrane 34##NM_006282|STK4|6789|serine/threonine kinase 4##AB209315|STK4|6789|serine/threonine kinase 4##BC029511|STK4|6789|serine/threonine kinase 4##AK309169|STK4|6789|serine/threonine kinase 4##AK225326|STK4|6789|serine/threonine kinase 4##BC005231|STK4|6789|serine/threonine kinase 4##BC015332|STK4|6789|serine/threonine kinase 4##BC038850|STK4|6789|serine/threonine kinase 4##CR933633|STK4|6789|serine/threonine kinase 4##BC093768|STK4|6789|serine/threonine kinase 4##AK315238|STK4|6789|serine/threonine kinase 4##U60207|STK4|6789|serine/threonine kinase 4##BC058916|STK4|6789|serine/threonine kinase 4##BC039023|STK4|6789|serine/threonine kinase 4##U18297|STK4|6789|serine/threonine kinase 4	0.0	0.0	
chr2	216778567	216778730	reg1014185.p1	3.768	+	BC117176 BC143754 BC143763 AB209840 TSC_hg19_v1_chr2_-_216300792 CR749316 CR749317 AB191261 AL832202 AL832771 BC078656 BC100030 BX537590 BX538017 BX538018 BX640608 BX640731 BX640802 BX640803 BX640875 BX640999 BX649182 NM_002026 NM_054034 NM_212474 NM_212476 NM_212478 NM_212482	-477866	-	X02761 AB384664 AB385106 EU831936 EU832031 TSC_hg19_v1_chr2_-_216300597 AJ276395 AJ535086	-478128	-	AF312399 TSC_hg19_v1_chr2_-_216290008	-488676	-	AK000978 BC082990 TSC_hg19_v1_chr2_-_216878341 BC032747 NM_018000	99688	-	AB464010 EU832649 EU832727 TSC_hg19_v1_chr2_-_216946491 AK315795 BC002529 AK296208 AJ250303 AF232009 AF212234 NM_018441	167896	-	NM_001142310 NM_001142311 NM_001142312 NM_138390 TSC_hg19_v1_chr2_+_216946641 AK313536 BC008604 AK091582 AX747073 CR933667	168044	+	BC117176|FN1|2335|fibronectin 1##BC143754|FN1|2335|fibronectin 1##BC143763|FN1|2335|fibronectin 1##AB209840|FN1|2335|fibronectin 1##CR749316|FN1|2335|fibronectin 1##CR749317|FN1|2335|fibronectin 1##AB191261|FN1|2335|fibronectin 1##AL832202|FN1|2335|fibronectin 1##AL832771|FN1|2335|fibronectin 1##BC078656|FN1|2335|fibronectin 1##BC100030|FN1|2335|fibronectin 1##BX537590|FN1|2335|fibronectin 1##BX538017|FN1|2335|fibronectin 1##BX538018|FN1|2335|fibronectin 1##BX640608|FN1|2335|fibronectin 1##BX640731|FN1|2335|fibronectin 1##BX640802|FN1|2335|fibronectin 1##BX640803|FN1|2335|fibronectin 1##BX640875|FN1|2335|fibronectin 1##BX640999|FN1|2335|fibronectin 1##BX649182|FN1|2335|fibronectin 1##NM_002026|FN1|2335|fibronectin 1##NM_054034|FN1|2335|fibronectin 1##NM_212474|FN1|2335|fibronectin 1##NM_212476|FN1|2335|fibronectin 1##NM_212478|FN1|2335|fibronectin 1##NM_212482|FN1|2335|fibronectin 1##X02761|FN1|2335|fibronectin 1##EU831936|FN1|2335|fibronectin 1##EU832031|FN1|2335|fibronectin 1##AJ276395|FN1|2335|fibronectin 1##AJ535086|FN1|2335|fibronectin 1##AF312399|FN1|2335|fibronectin 1##AK000978|MREG|55686|melanoregulin##BC082990|MREG|55686|melanoregulin##BC032747|MREG|55686|melanoregulin##NM_018000|MREG|55686|melanoregulin##EU832649|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##EU832727|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK315795|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##BC002529|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AK296208|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AJ250303|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF232009|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##AF212234|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_018441|PECR|55825|peroxisomal trans-2-enoyl-CoA reductase##NM_001142310|TMEM169|92691|transmembrane protein 169##NM_001142311|TMEM169|92691|transmembrane protein 169##NM_001142312|TMEM169|92691|transmembrane protein 169##NM_138390|TMEM169|92691|transmembrane protein 169##AK313536|TMEM169|92691|transmembrane protein 169##BC008604|TMEM169|92691|transmembrane protein 169##AK091582|TMEM169|92691|transmembrane protein 169##CR933667|TMEM169|92691|transmembrane protein 169	0.998861	0.0	denovo_WM_7:-30:0.314	denovo_WM_7:-31:0.314	denovo_WM_7:-32:0.314
chr3	14465833	14465902	reg1014681.p2	3.768	+	TSC_hg19_v1_chr3_+_14444105 NM_001134367 NM_001134368 NM_003043 AK308417 BC111489 AK307284 AK309534 BC137128 BC137129 BC144490 BC006252 AB209172	-21751	+	TSC_hg19_v1_chr3_+_14444072 AK303649	-21798	+	TSC_hg19_v1_chr3_+_14220355 AJ238095 AB463841 CR457185	-245516	+	NM_001080423	117720	-	TSC_hg19_v1_chr3_+_14693268 NM_016474 AK091158 AX746816 BC005199 BC033897 BC013999	227391	+	AK309525 TSC_hg19_v1_chr3_+_14693279 AF151046	227416	+	NM_001134367|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##NM_001134368|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##NM_003043|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK308417|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC111489|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK307284|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK309534|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC137128|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC137129|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC144490|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##BC006252|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AB209172|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AK303649|SLC6A6|6533|solute carrier family 6 (neurotransmitter transporter, taurine), member 6##AJ238095|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##CR457185|LSM3|27258|LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)##NM_001080423|GRIP2|80852|glutamate receptor interacting protein 2##NM_016474|C3orf19|51244|chromosome 3 open reading frame 19##AK091158|C3orf19|51244|chromosome 3 open reading frame 19##BC005199|C3orf19|51244|chromosome 3 open reading frame 19##BC033897|C3orf19|51244|chromosome 3 open reading frame 19##BC013999|C3orf19|51244|chromosome 3 open reading frame 19##AK309525|C3orf19|51244|chromosome 3 open reading frame 19##AF151046|C3orf19|51244|chromosome 3 open reading frame 19	0.997729	0.0	denovo_WM_7:4:0.470	denovo_WM_7:5:0.527
chr7	90229509	90229664	reg1015082.p1	3.768	+	TSC_hg19_v1_chr7_+_90225634 AK297974 AF119833	-3777	+	TSC_hg19_v1_chr7_+_90032774 AL136770 BC016061	-196782	+	NM_001185072 NM_001185073 NM_012129 TSC_hg19_v1_chr7_+_90032761 BC068532 AK312480	-196882	+	AB020641 BC152436 BC167152 BC167156 NM_012395 BC136477 AK289782 AB384534 BC152388	109197	+	AK295086 AK296406 AK307484 AK316026 TSC_hg19_v1_chr7_+_90339175	109574	+	BC017719 TSC_hg19_v1_chr7_+_90893724	664115	+	AK297974|CDK14|5218|cyclin-dependent kinase 14##AF119833|CDK14|5218|cyclin-dependent kinase 14##AL136770|CLDN12|9069|claudin 12##NM_001185072|CLDN12|9069|claudin 12##NM_001185073|CLDN12|9069|claudin 12##NM_012129|CLDN12|9069|claudin 12##BC068532|CLDN12|9069|claudin 12##AK312480|CLDN12|9069|claudin 12##AB020641|CDK14|5218|cyclin-dependent kinase 14##BC152436|CDK14|5218|cyclin-dependent kinase 14##BC167152|CDK14|5218|cyclin-dependent kinase 14##BC167156|CDK14|5218|cyclin-dependent kinase 14##NM_012395|CDK14|5218|cyclin-dependent kinase 14##BC136477|CDK14|5218|cyclin-dependent kinase 14##AK289782|CDK14|5218|cyclin-dependent kinase 14##BC152388|CDK14|5218|cyclin-dependent kinase 14##AK295086|CDK14|5218|cyclin-dependent kinase 14##AK296406|CDK14|5218|cyclin-dependent kinase 14##AK307484|CDK14|5218|cyclin-dependent kinase 14##AK316026|CDK14|5218|cyclin-dependent kinase 14##BC017719|FZD1|8321|frizzled family receptor 1	0.413251	0.0	
chrX	100461629	100461719	reg1010443.p2	3.768	+	TSC_hg19_v1_chrX_-_100446278 DQ145510	-15323	-	NM_006733 X97249	-106877	+	TSC_hg19_v1_chrX_+_100353189 AK302986	-108500	+	NM_001171184 NM_001939 AB209305 BC036095 U43519 AK289825 AK295843 BC111695	13339	+	AF285595 NM_001168474	84649	-	BC043391 AK308261 NM_024885	86377	-	DQ145510|YWHAQP8|392510|YWHAQ pseudogene 8##NM_006733|CENPI|2491|centromere protein I##X97249|CENPI|2491|centromere protein I##AK302986|CENPI|2491|centromere protein I##NM_001171184|DRP2|1821|dystrophin related protein 2##NM_001939|DRP2|1821|dystrophin related protein 2##AB209305|DRP2|1821|dystrophin related protein 2##BC036095|DRP2|1821|dystrophin related protein 2##U43519|DRP2|1821|dystrophin related protein 2##AK289825|DRP2|1821|dystrophin related protein 2##AK295843|DRP2|1821|dystrophin related protein 2##BC111695|DRP2|1821|dystrophin related protein 2##AF285595|TAF7L|54457|TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa##NM_001168474|TAF7L|54457|TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa##BC043391|TAF7L|54457|TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa##AK308261|TAF7L|54457|TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa##NM_024885|TAF7L|54457|TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa	0.0	0.010605	
chr1	31235618	31235751	reg1011861.p1	3.767	+	TSC_hg19_v1_chr1_-_31230697 NM_006762	-4994	-	AB383742 TSC_hg19_v1_chr1_-_31230622 D42042 U30498 AK297014 AK307303 AK292009 BC106896 BC106897 U51240	-5052	-	TSC_hg19_v1_chr1_-_31196436 AK312949 NM_002379 AK075519	-39252	-	TSC_hg19_v1_chr1_-_31345363 AL049426	109714	-	AB385258 AF248634 NM_014654 TSC_hg19_v1_chr1_-_31381606	145864	-	TSC_hg19_v1_chr1_-_31538543 BC013398 D43951 AK291779 AK300457 AF315592 AK096476 AK222605	302833	-	NM_006762|LAPTM5|7805|lysosomal protein transmembrane 5##D42042|LAPTM5|7805|lysosomal protein transmembrane 5##U30498|LAPTM5|7805|lysosomal protein transmembrane 5##AK297014|LAPTM5|7805|lysosomal protein transmembrane 5##AK292009|LAPTM5|7805|lysosomal protein transmembrane 5##BC106896|LAPTM5|7805|lysosomal protein transmembrane 5##BC106897|LAPTM5|7805|lysosomal protein transmembrane 5##U51240|LAPTM5|7805|lysosomal protein transmembrane 5##AK312949|MATN1|4146|matrilin 1, cartilage matrix protein##NM_002379|MATN1|4146|matrilin 1, cartilage matrix protein##AK075519|MATN1|4146|matrilin 1, cartilage matrix protein##AL049426|SDC3|9672|syndecan 3##AF248634|SDC3|9672|syndecan 3##NM_014654|SDC3|9672|syndecan 3##BC013398|PUM1|9698|pumilio homolog 1 (Drosophila)##D43951|PUM1|9698|pumilio homolog 1 (Drosophila)##AK291779|PUM1|9698|pumilio homolog 1 (Drosophila)##AK300457|PUM1|9698|pumilio homolog 1 (Drosophila)##AF315592|PUM1|9698|pumilio homolog 1 (Drosophila)##AK096476|PUM1|9698|pumilio homolog 1 (Drosophila)##AK222605|PUM1|9698|pumilio homolog 1 (Drosophila)	0.0	0.0	
chr19	46784168	46784262	reg1016725.p2	3.767	+	AY359013 NM_198541 AY672111	-51206	+	AY358692 NM_001135113	-132716	+	AY672112 NM_001002915	-133177	+	TSC_hg19_v1_chr19_+_46800304 NM_152795 AF463492 BC026308 AB118749 AB295039 AK027725 AB527715 BC080551	16098	+	NM_022462 NM_152796 AK297828 AK304747 TSC_hg19_v1_chr19_+_46801682 AK021421 AK021653 AK024095	17445	+	AK314680 NM_152794 AB054067	22674	+	AY359013|IGFL1|374918|IGF-like family member 1##NM_198541|IGFL1|374918|IGF-like family member 1##AY672111|IGFL1|374918|IGF-like family member 1##AY358692|IGFL2|147920|IGF-like family member 2##NM_001135113|IGFL2|147920|IGF-like family member 2##AY672112|IGFL2|147920|IGF-like family member 2##NM_001002915|IGFL2|147920|IGF-like family member 2##NM_152795|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AF463492|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##BC026308|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AB118749|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AB295039|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK027725|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##BC080551|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_022462|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_152796|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK297828|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK304747|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK021421|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK021653|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK024095|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AK314680|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##NM_152794|HIF3A|64344|hypoxia inducible factor 3, alpha subunit##AB054067|HIF3A|64344|hypoxia inducible factor 3, alpha subunit	0.113649	0.026242	
chr2	101796511	101796636	reg1012765.p1	3.767	+	AB449889 TSC_hg19_v1_chr2_-_101767845 AK300533 NM_001102426	-28790	-	NM_000993 NM_001098577 NM_001099693 TSC_hg19_v1_chr2_+_101618754 AK297247 AK297483 BC070210 BC070373 AK297167 AK311775	-177851	+	TSC_hg19_v1_chr2_+_101436610 NM_002518 U77970 BC072383 BC051351	-359807	+	TSC_hg19_v1_chr2_+_101869347 NM_017546	72764	+	TSC_hg19_v1_chr2_+_101869378 AF103798 BC064421 BC018664	72819	+	AM392566 AB463234 TSC_hg19_v1_chr2_-_101925153 BC019355 BC032328 AK074985 AK075141 AY450390 BC045743 AK129799 NM_173647	128569	-	AB449889|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##AK300533|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_001102426|TBC1D8|11138|TBC1 domain family, member 8 (with GRAM domain)##NM_000993|RPL31|6160|ribosomal protein L31##NM_001098577|RPL31|6160|ribosomal protein L31##NM_001099693|RPL31|6160|ribosomal protein L31##AK297483|RPL31|6160|ribosomal protein L31##BC070210|RPL31|6160|ribosomal protein L31##BC070373|RPL31|6160|ribosomal protein L31##AK311775|RPL31|6160|ribosomal protein L31##NM_002518|NPAS2|4862|neuronal PAS domain protein 2##U77970|NPAS2|4862|neuronal PAS domain protein 2##BC072383|NPAS2|4862|neuronal PAS domain protein 2##BC051351|NPAS2|4862|neuronal PAS domain protein 2##NM_017546|C2orf29|55571|chromosome 2 open reading frame 29##AF103798|C2orf29|55571|chromosome 2 open reading frame 29##BC064421|C2orf29|55571|chromosome 2 open reading frame 29##BC018664|C2orf29|55571|chromosome 2 open reading frame 29##AM392566|RNF149|284996|ring finger protein 149##BC019355|RNF149|284996|ring finger protein 149##BC032328|RNF149|284996|ring finger protein 149##AK074985|RNF149|284996|ring finger protein 149##AK075141|RNF149|284996|ring finger protein 149##AY450390|RNF149|284996|ring finger protein 149##BC045743|RNF149|284996|ring finger protein 149##AK129799|RNF149|284996|ring finger protein 149##NM_173647|RNF149|284996|ring finger protein 149	1.958905	0.629979	denovo_WM_7:-16:0.238	denovo_WM_7:-17:0.641	CTCF.p2:18:0.630	denovo_WM_7:-32:0.790
chr7	2648565	2648652	reg1014012.p1	3.767	+	AK092404 AX747526 TSC_hg19_v1_chr7_+_2598712 BC061518 AL136792 AK293372	-49861	+	TSC_hg19_v1_chr7_+_2598682 AK309646 BC043150	-49919	+	TSC_hg19_v1_chr7_+_2598649 AK302053	-49953	+	TSC_hg19_v1_chr7_+_2671621 NM_025250 AB051478 BC152447	22995	+	TSC_hg19_v1_chr7_+_2671642 BC131824 AB162931	23095	+	AK289723 AB075830 BC146753 NM_133463	70550	+	AK092404|IQCE|23288|IQ motif containing E##BC061518|IQCE|23288|IQ motif containing E##AL136792|IQCE|23288|IQ motif containing E##AK293372|IQCE|23288|IQ motif containing E##AK309646|IQCE|23288|IQ motif containing E##BC043150|IQCE|23288|IQ motif containing E##AK302053|IQCE|23288|IQ motif containing E##NM_025250|TTYH3|80727|tweety homolog 3 (Drosophila)##AB051478|TTYH3|80727|tweety homolog 3 (Drosophila)##BC152447|TTYH3|80727|tweety homolog 3 (Drosophila)##BC131824|TTYH3|80727|tweety homolog 3 (Drosophila)##AB162931|TTYH3|80727|tweety homolog 3 (Drosophila)##AK289723|AMZ1|155185|archaelysin family metallopeptidase 1##AB075830|AMZ1|155185|archaelysin family metallopeptidase 1##BC146753|AMZ1|155185|archaelysin family metallopeptidase 1##NM_133463|AMZ1|155185|archaelysin family metallopeptidase 1	0.0	0.0	
chr7	72627255	72627435	reg1002469.p2	3.767	+	BC045632 TSC_hg19_v1_chr7_+_72569035 AK299175	-58314	+	BC050591 BC066297 BC056405 BC007488 TSC_hg19_v1_chr7_-_72425263 BC082753 AF416611 AF420250 AK021688 AL833016 AK292107 AK126486	-202103	-	AK292548 TSC_hg19_v1_chr7_+_72396883 AB528161 CU679111	-230471	+	TSC_hg19_v1_chr7_-_72722806 AB590182 CU675927 DQ892994 DQ896242 AF420249 AK126375 AF412028 AK001129 BC008084 AK315361 AK125667 AK298221 AK098619 NM_001168347 NM_001168348 NM_018044 NM_148956	95479	-	AK057366 AY081948 AY081949 NM_178125	114739	-	NM_001135211 AK302121 NM_003602 AK310255 BC036817 AF038847 CU691432 EU176233 EU176537 GQ129339 GQ129340	114947	+	BC045632|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##AK299175|GTF2IP1|2970|general transcription factor IIi, pseudogene 1##BC050591|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC066297|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC056405|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC007488|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##BC082753|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF416611|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AF420250|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK021688|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AL833016|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK292107|NSUN5P2|260294|NOP2/Sun domain family, member 5 pseudogene 2##AK126486|NSUN5P1|155400|NOP2/Sun domain family, member 5 pseudogene 1##AK292548|POM121|9883|POM121 membrane glycoprotein##DQ892994|NSUN5|55695|NOP2/Sun domain family, member 5##DQ896242|NSUN5|55695|NOP2/Sun domain family, member 5##AF420249|NSUN5|55695|NOP2/Sun domain family, member 5##AK126375|NSUN5|55695|NOP2/Sun domain family, member 5##AF412028|NSUN5|55695|NOP2/Sun domain family, member 5##AK001129|NSUN5|55695|NOP2/Sun domain family, member 5##BC008084|NSUN5|55695|NOP2/Sun domain family, member 5##AK315361|NSUN5|55695|NOP2/Sun domain family, member 5##AK125667|NSUN5|55695|NOP2/Sun domain family, member 5##AK298221|NSUN5|55695|NOP2/Sun domain family, member 5##AK098619|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168347|NSUN5|55695|NOP2/Sun domain family, member 5##NM_001168348|NSUN5|55695|NOP2/Sun domain family, member 5##NM_018044|NSUN5|55695|NOP2/Sun domain family, member 5##NM_148956|NSUN5|55695|NOP2/Sun domain family, member 5##AK057366|TRIM50|135892|tripartite motif containing 50##AY081948|TRIM50|135892|tripartite motif containing 50##AY081949|TRIM50|135892|tripartite motif containing 50##NM_178125|TRIM50|135892|tripartite motif containing 50##NM_001135211|FKBP6|8468|FK506 binding protein 6, 36kDa##AK302121|FKBP6|8468|FK506 binding protein 6, 36kDa##NM_003602|FKBP6|8468|FK506 binding protein 6, 36kDa##AK310255|FKBP6|8468|FK506 binding protein 6, 36kDa##BC036817|FKBP6|8468|FK506 binding protein 6, 36kDa##AF038847|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176233|FKBP6|8468|FK506 binding protein 6, 36kDa##EU176537|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129339|FKBP6|8468|FK506 binding protein 6, 36kDa##GQ129340|FKBP6|8468|FK506 binding protein 6, 36kDa	0.0	0.0	
chr8	144976822	144976943	reg1015649.p2	3.767	+	AB051895 NM_031308	-29449	-	TSC_hg19_v1_chr8_-_144923180 BC071605 AK293943 NM_178564	-53723	-	TSC_hg19_v1_chr8_-_144911540 AF114818 AK292373 NM_014281 NM_078480	-65332	-	AF330791 TSC_hg19_v1_chr8_-_145013766 AY480051 NM_201384	36821	-	AY480050 NM_201383 TSC_hg19_v1_chr8_-_145016793	39879	-	AF330792 AY480049 TSC_hg19_v1_chr8_-_145018117 NM_201382	41222	-	AB051895|EPPK1|83481|epiplakin 1##NM_031308|EPPK1|83481|epiplakin 1##BC071605|NRBP2|340371|nuclear receptor binding protein 2##AK293943|NRBP2|340371|nuclear receptor binding protein 2##NM_178564|NRBP2|340371|nuclear receptor binding protein 2##AF114818|PUF60|22827|poly-U binding splicing factor 60KDa##AK292373|PUF60|22827|poly-U binding splicing factor 60KDa##NM_014281|PUF60|22827|poly-U binding splicing factor 60KDa##NM_078480|PUF60|22827|poly-U binding splicing factor 60KDa##AY480051|PLEC|5339|plectin##NM_201384|PLEC|5339|plectin##AY480050|PLEC|5339|plectin##NM_201383|PLEC|5339|plectin##AF330792|PLEC|5339|plectin##AY480049|PLEC|5339|plectin##NM_201382|PLEC|5339|plectin	0.0	0.992715	CTCF.p2:-27:0.993
chr17	29295376	29295482	reg1012033.p1	3.766	+	AK074196 AJ238994 AJ242782 NM_018404 TSC_hg19_v1_chr17_+_29248960 AK074204 AK222526 AJ272195 BC033758 DQ288859	-46597	+	CU692922 TSC_hg19_v1_chr17_-_29233257 AJ314645 AK026382 AK225474 BC024328 AK298495 NM_024683	-62178	-	TSC_hg19_v1_chr17_+_29158987 AL832103 BC015051 AJ314648 AY557611 NM_024857	-136444	+	NM_001184992 NM_032322 NM_197939 TSC_hg19_v1_chr17_+_29298040 BC126420 BC126422 BC144143 AJ496729 BC005084	2569	+	TSC_hg19_v1_chr17_+_29298062 AK226030 BC082262 AK312979 AK122646 AK122709 AB470605 AY598332	2711	+	TSC_hg19_v1_chr17_+_29421944 D12625 NM_000267 NM_001042492 NM_001128147	126515	+	AK074196|ADAP2|55803|ArfGAP with dual PH domains 2##AJ238994|ADAP2|55803|ArfGAP with dual PH domains 2##AJ242782|ADAP2|55803|ArfGAP with dual PH domains 2##NM_018404|ADAP2|55803|ArfGAP with dual PH domains 2##AK074204|ADAP2|55803|ArfGAP with dual PH domains 2##AK222526|ADAP2|55803|ArfGAP with dual PH domains 2##AJ272195|ADAP2|55803|ArfGAP with dual PH domains 2##BC033758|ADAP2|55803|ArfGAP with dual PH domains 2##DQ288859|ADAP2|55803|ArfGAP with dual PH domains 2##AJ314645|C17orf42|79736|chromosome 17 open reading frame 42##AK026382|C17orf42|79736|chromosome 17 open reading frame 42##AK225474|C17orf42|79736|chromosome 17 open reading frame 42##BC024328|C17orf42|79736|chromosome 17 open reading frame 42##AK298495|C17orf42|79736|chromosome 17 open reading frame 42##NM_024683|C17orf42|79736|chromosome 17 open reading frame 42##AL832103|ATAD5|79915|ATPase family, AAA domain containing 5##BC015051|ATAD5|79915|ATPase family, AAA domain containing 5##AJ314648|ATAD5|79915|ATPase family, AAA domain containing 5##AY557611|ATAD5|79915|ATPase family, AAA domain containing 5##NM_024857|ATAD5|79915|ATPase family, AAA domain containing 5##NM_001184992|RNF135|84282|ring finger protein 135##NM_032322|RNF135|84282|ring finger protein 135##NM_197939|RNF135|84282|ring finger protein 135##BC126420|RNF135|84282|ring finger protein 135##BC126422|RNF135|84282|ring finger protein 135##BC144143|RNF135|84282|ring finger protein 135##AJ496729|RNF135|84282|ring finger protein 135##BC005084|RNF135|84282|ring finger protein 135##AK226030|RNF135|84282|ring finger protein 135##BC082262|RNF135|84282|ring finger protein 135##AK312979|RNF135|84282|ring finger protein 135##AK122646|RNF135|84282|ring finger protein 135##AK122709|RNF135|84282|ring finger protein 135##AB470605|RNF135|84282|ring finger protein 135##AY598332|RNF135|84282|ring finger protein 135##D12625|NF1|4763|neurofibromin 1##NM_000267|NF1|4763|neurofibromin 1##NM_001042492|NF1|4763|neurofibromin 1##NM_001128147|NF1|4763|neurofibromin 1	1.018034	0.0	denovo_WM_7:-14:0.211	denovo_WM_7:-16:0.601
chr17	3586572	3586752	reg1012213.p2	3.766	+	NM_001014764 NM_031298 TSC_hg19_v1_chr17_+_3572105 BC001409	-14560	+	TSC_hg19_v1_chr17_-_3571905 AF028823 NM_001204698 NM_014604	-14724	-	AB590842 CU692828 TSC_hg19_v1_chr17_-_3571873 AF277318 BC035653 U90913 AF234997 AK001327 AK315408 BC023980	-14814	-	DQ234349 CU691640 AB528606 TSC_hg19_v1_chr17_-_3599311 AF070573 AF016709 U49395 U49396	12650	-	BC006220 BC028084 TSC_hg19_v1_chr17_-_3599406 BC039015	12742	-	AB209623 BC016917 AK307959 TSC_hg19_v1_chr17_-_3599535 BC008319 AK290889 NM_001204519 NM_001204520 NM_002561 NM_175080	12930	-	NM_001014764|TMEM93|83460|transmembrane protein 93##NM_031298|TMEM93|83460|transmembrane protein 93##BC001409|TMEM93|83460|transmembrane protein 93##AF028823|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##NM_001204698|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##NM_014604|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AF277318|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##U90913|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AF234997|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AK001327|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##AK315408|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##BC023980|TAX1BP3|30851|Tax1 (human T-cell leukemia virus type I) binding protein 3##DQ234349|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF070573|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AF016709|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49395|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##U49396|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC006220|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC028084|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC039015|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AB209623|P2RX5-TAX1BP3|100533970|P2RX5-TAX1BP3 readthrough##BC016917|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK307959|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##BC008319|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##AK290889|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204519|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_001204520|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_002561|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5##NM_175080|P2RX5|5026|purinergic receptor P2X, ligand-gated ion channel, 5	0.0	0.0	
chr21	47703750	47703875	reg1014243.p2	3.766	+	TSC_hg19_v1_chr21_+_47649138 AF426263 AK001370 BC047759 BC002458 BC059792 AF426262	-54689	+	TSC_hg19_v1_chr21_-_47648720 NM_001001438 NM_001145436 NM_001145437 NM_002340	-55083	-	TSC_hg19_v1_chr21_-_47648692 AK312489 AK296313	-55115	-	AK304208 TSC_hg19_v1_chr21_-_47704200	371	-	AJ010089 NM_003906 BC104958 BC104960	1443	-	TSC_hg19_v1_chr21_+_47706255 AK294975 NM_001006114 NM_058181	2437	+	AF426263|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##AK001370|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##BC047759|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##BC002458|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##BC059792|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##AF426262|MCM3AP-AS1|114044|MCM3AP antisense RNA 1 (non-protein coding)##NM_001001438|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##NM_001145436|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##NM_001145437|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##NM_002340|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK312489|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK296313|LSS|4047|lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)##AK304208|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##AJ010089|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##NM_003906|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##BC104958|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##BC104960|MCM3AP|8888|minichromosome maintenance complex component 3 associated protein##AK294975|YBEY|54059|ybeY metallopeptidase (putative)##NM_001006114|YBEY|54059|ybeY metallopeptidase (putative)##NM_058181|YBEY|54059|ybeY metallopeptidase (putative)	0.0	0.0	
chr7	2340152	2340279	reg1014339.p2	3.766	+	BC065367 AB025238 AB025239 AB025242 NM_198953 NM_198954 BC022818 BC040144 CU677071	-57682	+	AB025233 NM_002452 NM_198948 NM_198949 BC051375 AB025234 AB025235 AB025240 BC014618 AK026631 AB025236 AB025237 AB025241 NM_198950 NM_198952	-58340	+	TSC_hg19_v1_chr7_-_2281824 BC017181 AF093415 NM_013393 AK302060	-58382	-	TSC_hg19_v1_chr7_-_2354018 BC007785	13809	-	TSC_hg19_v1_chr7_-_2354077 CU692368 DQ892508 DQ895722 AK074544 AF121858 AK315670 BC021565 NM_013321	13859	-	TSC_hg19_v1_chr7_+_2394488 NM_001037283 NM_003751 AK302058	54247	+	BC065367|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025238|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025239|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025242|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198953|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198954|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC022818|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC040144|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025233|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_002452|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198948|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198949|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC051375|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025234|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025235|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025240|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC014618|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AK026631|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025236|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025237|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##AB025241|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198950|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##NM_198952|NUDT1|4521|nudix (nucleoside diphosphate linked moiety X)-type motif 1##BC017181|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AF093415|FTSJ2|29960|FtsJ homolog 2 (E. coli)##NM_013393|FTSJ2|29960|FtsJ homolog 2 (E. coli)##AK302060|FTSJ2|29960|FtsJ homolog 2 (E. coli)##BC007785|SNX8|29886|sorting nexin 8##DQ892508|SNX8|29886|sorting nexin 8##DQ895722|SNX8|29886|sorting nexin 8##AK074544|SNX8|29886|sorting nexin 8##AF121858|SNX8|29886|sorting nexin 8##AK315670|SNX8|29886|sorting nexin 8##BC021565|SNX8|29886|sorting nexin 8##NM_013321|SNX8|29886|sorting nexin 8##NM_001037283|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##NM_003751|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B##AK302058|EIF3B|8662|eukaryotic translation initiation factor 3, subunit B	1.231618	0.0	denovo_WM_7:7:0.218	denovo_WM_7:64:0.830
chr1	151411331	151411470	reg1008818.p1	3.765	+	TSC_hg19_v1_chr1_+_151372038 AK313825 AK294149 D26600 NM_002796 BC008314 BC010088 BC010098 BC011768 BC012168 BC017451 BC017486 BC000331 AB464086 BT006917 CR456820 CU675936 CU678915 CU679615 CU680252 DQ890748 DQ892020 DQ895212 S71381	-39360	+	AK310044 BC009084 NM_003944 TSC_hg19_v1_chr1_-_151345182 AK303815 AK296661 AK309264 AK315643 AK023875 AK298355 BC032997	-66231	-	TSC_hg19_v1_chr1_-_151319726 AK312289 AK302891 NM_000449 NM_001025603 AK311525	-91657	-	TSC_hg19_v1_chr1_-_151414644 AB007930 AB463182 NM_207171 CU691222	3261	-	TSC_hg19_v1_chr1_-_151431656 BX649163 AB037911 AB075477 AK000199 AK300307 BC057773 BX537561 AK299791 AK302501	20276	-	TSC_hg19_v1_chr1_-_151431954 AJ242979 BX537838 NM_001194937 NM_001194938 NM_015100 NM_145796	20531	-	AK313825|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK294149|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##D26600|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##NM_002796|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC008314|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010088|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC010098|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC011768|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC012168|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017451|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC017486|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BC000331|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##BT006917|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##CR456820|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ890748|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ892020|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##DQ895212|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##S71381|PSMB4|5692|proteasome (prosome, macropain) subunit, beta type, 4##AK310044|SELENBP1|8991|selenium binding protein 1##BC009084|SELENBP1|8991|selenium binding protein 1##NM_003944|SELENBP1|8991|selenium binding protein 1##AK303815|SELENBP1|8991|selenium binding protein 1##AK296661|SELENBP1|8991|selenium binding protein 1##AK309264|SELENBP1|8991|selenium binding protein 1##AK315643|SELENBP1|8991|selenium binding protein 1##AK023875|SELENBP1|8991|selenium binding protein 1##AK298355|SELENBP1|8991|selenium binding protein 1##BC032997|SELENBP1|8991|selenium binding protein 1##AK312289|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK302891|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_000449|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##NM_001025603|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AK311525|RFX5|5993|regulatory factor X, 5 (influences HLA class II expression)##AB007930|POGZ|23126|pogo transposable element with ZNF domain##NM_207171|POGZ|23126|pogo transposable element with ZNF domain##BX649163|POGZ|23126|pogo transposable element with ZNF domain##AB037911|POGZ|23126|pogo transposable element with ZNF domain##AB075477|POGZ|23126|pogo transposable element with ZNF domain##AK000199|POGZ|23126|pogo transposable element with ZNF domain##AK300307|POGZ|23126|pogo transposable element with ZNF domain##BC057773|POGZ|23126|pogo transposable element with ZNF domain##BX537561|POGZ|23126|pogo transposable element with ZNF domain##AK299791|POGZ|23126|pogo transposable element with ZNF domain##AK302501|POGZ|23126|pogo transposable element with ZNF domain##AJ242979|POGZ|23126|pogo transposable element with ZNF domain##BX537838|POGZ|23126|pogo transposable element with ZNF domain##NM_001194937|POGZ|23126|pogo transposable element with ZNF domain##NM_001194938|POGZ|23126|pogo transposable element with ZNF domain##NM_015100|POGZ|23126|pogo transposable element with ZNF domain##NM_145796|POGZ|23126|pogo transposable element with ZNF domain	0.998728	0.0	denovo_WM_7:-36:0.222	denovo_WM_7:-37:0.330
chr11	77790921	77791010	reg1019265.p1	3.765	+	CR533448 AB528753 AM392713 TSC_hg19_v1_chr11_-_77790909 AK022785 AF087659 AF369951 AK098173 AL050278 AF369952 AK023013 AF070652 BC007323	-91	-	TSC_hg19_v1_chr11_+_77774906 AK311975 NM_003251 BC031989 EU447014	-16052	+	BC001062 BC001929 NM_023930	-56663	-	AF087899 NM_001203260 NM_001203261 NM_001203262 NM_001204054 NM_001204055 NM_004549	299	-	EU831448 CU674570 AK075184 TSC_hg19_v1_chr11_-_77850658 AJ224875 AK075194	59680	-	TSC_hg19_v1_chr11_-_77850666 AK309050	59698	-	CR533448|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AM392713|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK022785|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF087659|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369951|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK098173|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AL050278|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF369952|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK023013|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AF070652|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##BC007323|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##AK311975|THRSP|7069|thyroid hormone responsive##NM_003251|THRSP|7069|thyroid hormone responsive##BC031989|THRSP|7069|thyroid hormone responsive##EU447014|THRSP|7069|thyroid hormone responsive##BC001062|KCTD14|65987|potassium channel tetramerisation domain containing 14##BC001929|KCTD14|65987|potassium channel tetramerisation domain containing 14##NM_023930|KCTD14|65987|potassium channel tetramerisation domain containing 14##AF087899|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##NM_001203260|NDUFC2-KCTD14|100532726|NDUFC2-KCTD14 readthrough##NM_001203261|NDUFC2-KCTD14|100532726|NDUFC2-KCTD14 readthrough##NM_001203262|NDUFC2-KCTD14|100532726|NDUFC2-KCTD14 readthrough##NM_001204054|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##NM_001204055|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##NM_004549|NDUFC2|4718|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa##EU831448|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AK075184|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AJ224875|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AK075194|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AK309050|ALG8|79053|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)	0.0	0.0	
chr13	115062655	115062786	reg1011843.p1	3.765	+	TSC_hg19_v1_chr13_+_115047085 AY013250 NM_023011 NM_080687 BC023569 BC047735 AK294545 AK302003 AF318575	-15606	+	TSC_hg19_v1_chr13_+_115000402 AK296424 BC017244 BC010875 AK315302 U18291 AB590520 AF164598 CU677877	-62258	+	TSC_hg19_v1_chr13_+_115000360 NM_001078645 NM_003903	-62361	+	TSC_hg19_v1_chr13_+_115080005 NM_001164144 NM_001164145 NM_032436 AK096346 BC065237	17266	+	None	None	None	None	None	None	AY013250|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_023011|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##NM_080687|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC023569|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##BC047735|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK294545|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK302003|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AF318575|UPF3A|65110|UPF3 regulator of nonsense transcripts homolog A (yeast)##AK296424|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC017244|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##BC010875|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AK315302|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##U18291|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##AF164598|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_001078645|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_003903|CDC16|8881|cell division cycle 16 homolog (S. cerevisiae)##NM_001164144|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_001164145|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##NM_032436|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##AK096346|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1##BC065237|CHAMP1|283489|chromosome alignment maintaining phosphoprotein 1	0.998442	0.0	denovo_WM_7:-14:0.648
chr13	97862673	97862799	reg1014796.p1	3.765	+	TSC_hg19_v1_chr13_+_97794087 CR749802	-68654	+	AK122639 NM_080818 AK313684	-216124	-	AF539426 NM_153456	-1119644	+	TSC_hg19_v1_chr13_+_97874586 AK074610 NM_144778 NM_207304 AK291727 AF061261 AF491866 BC032426 BC104038 BC104039 BC104040 AK315844	11859	+	TSC_hg19_v1_chr13_+_97874708 BC020418	11978	+	BC020430 TSC_hg19_v1_chr13_+_97928308	65516	+	CR749802|MBNL2|10150|muscleblind-like 2 (Drosophila)##AK122639|OXGR1|27199|oxoglutarate (alpha-ketoglutarate) receptor 1##NM_080818|OXGR1|27199|oxoglutarate (alpha-ketoglutarate) receptor 1##AK313684|OXGR1|27199|oxoglutarate (alpha-ketoglutarate) receptor 1##AF539426|HS6ST3|266722|heparan sulfate 6-O-sulfotransferase 3##NM_153456|HS6ST3|266722|heparan sulfate 6-O-sulfotransferase 3##NM_144778|MBNL2|10150|muscleblind-like 2 (Drosophila)##NM_207304|MBNL2|10150|muscleblind-like 2 (Drosophila)##AK291727|MBNL2|10150|muscleblind-like 2 (Drosophila)##AF061261|MBNL2|10150|muscleblind-like 2 (Drosophila)##AF491866|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC032426|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC104038|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC104039|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC104040|MBNL2|10150|muscleblind-like 2 (Drosophila)##AK315844|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC020418|MBNL2|10150|muscleblind-like 2 (Drosophila)##BC020430|MBNL2|10150|muscleblind-like 2 (Drosophila)	0.995531	0.0	
chr16	73091335	73091472	reg1014671.p1	3.765	+	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	-9182	-	TSC_hg19_v1_chr16_-_72991733 BC029653	-99698	-	TSC_hg19_v1_chr16_+_72699031 AK021563	-392339	+	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	1183	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	1239290	+	TSC_hg19_v1_chr16_+_74330732 D50063 AB528643 CU680372	1239368	+	L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##BC029653|ZFHX3|463|zinc finger homeobox 3##D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##D50063|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	1.975444	0.0	denovo_WM_7:38:0.814	denovo_WM_7:70:0.852
chr19	42924196	42924332	reg1012822.p1	3.765	+	TSC_hg19_v1_chr19_+_42901325 AK311181	-22952	+	BC101197 BC101198 AB049591 AK312080 NM_032488	-29833	-	AB011541 BC153880 NM_001410 TSC_hg19_v1_chr19_+_42829786	-94478	+	TSC_hg19_v1_chr19_-_42928157 BC029301	3949	-	AK309893 AK292482 BC029961 BC070041 NM_005357 U40002	7274	-	BC093946 BC112095 AK292985 AY358433 NM_198477 AY598464	22860	-	BC101197|CNFN|84518|cornifelin##BC101198|CNFN|84518|cornifelin##AB049591|CNFN|84518|cornifelin##AK312080|CNFN|84518|cornifelin##NM_032488|CNFN|84518|cornifelin##AB011541|MEGF8|1954|multiple EGF-like-domains 8##BC153880|MEGF8|1954|multiple EGF-like-domains 8##NM_001410|MEGF8|1954|multiple EGF-like-domains 8##BC029301|LIPE|3991|lipase, hormone-sensitive##AK292482|LIPE|3991|lipase, hormone-sensitive##BC029961|LIPE|3991|lipase, hormone-sensitive##BC070041|LIPE|3991|lipase, hormone-sensitive##NM_005357|LIPE|3991|lipase, hormone-sensitive##U40002|LIPE|3991|lipase, hormone-sensitive##BC093946|CXCL17|284340|chemokine (C-X-C motif) ligand 17##BC112095|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AK292985|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY358433|CXCL17|284340|chemokine (C-X-C motif) ligand 17##NM_198477|CXCL17|284340|chemokine (C-X-C motif) ligand 17##AY598464|CXCL17|284340|chemokine (C-X-C motif) ligand 17	0.996639	0.991312	CTCF.p2:78:0.991	denovo_WM_7:-93:0.425	denovo_WM_7:-94:0.425
chr2	233415173	233415260	reg1013961.p1	3.765	+	AK125362 AK309340 NM_005199 TSC_hg19_v1_chr2_+_233404441 BC111802	-10770	+	AK300109 BC093923 BC093925 AK291526 AK296704 AK304890 AK315297 TSC_hg19_v1_chr2_+_233390910 NM_000751 X55019	-24321	+	NM_001195129	-30044	+	TSC_hg19_v1_chr2_-_233415265 AK056329 NM_145702 BC063500	19	-	TSC_hg19_v1_chr2_-_233415301 BC035143	103	-	TSC_hg19_v1_chr2_+_233415410 NM_004846 BC005874 AB209519 AK022518 AK303802 BC005392 BC021690 AF038957 AF047695 BC000360 AF068117 BC021226 CU676880	229	+	AK125362|CHRNG|1146|cholinergic receptor, nicotinic, gamma##AK309340|CHRNG|1146|cholinergic receptor, nicotinic, gamma##NM_005199|CHRNG|1146|cholinergic receptor, nicotinic, gamma##BC111802|CHRNG|1146|cholinergic receptor, nicotinic, gamma##AK300109|CHRND|1144|cholinergic receptor, nicotinic, delta##BC093923|CHRND|1144|cholinergic receptor, nicotinic, delta##BC093925|CHRND|1144|cholinergic receptor, nicotinic, delta##AK291526|CHRND|1144|cholinergic receptor, nicotinic, delta##AK296704|CHRND|1144|cholinergic receptor, nicotinic, delta##AK304890|CHRND|1144|cholinergic receptor, nicotinic, delta##AK315297|CHRND|1144|cholinergic receptor, nicotinic, delta##NM_000751|CHRND|1144|cholinergic receptor, nicotinic, delta##X55019|CHRND|1144|cholinergic receptor, nicotinic, delta##NM_001195129|PRSS56|646960|protease, serine, 56##AK056329|TIGD1|200765|tigger transposable element derived 1##NM_145702|TIGD1|200765|tigger transposable element derived 1##BC063500|TIGD1|200765|tigger transposable element derived 1##BC035143|TIGD1|200765|tigger transposable element derived 1##NM_004846|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC005874|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AB209519|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AK022518|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AK303802|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC005392|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC021690|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF038957|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF047695|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC000360|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##AF068117|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2##BC021226|EIF4E2|9470|eukaryotic translation initiation factor 4E family member 2	0.0	0.0	
chr4	101934807	101934914	reg1015875.p1	3.765	+	CU676062 AB590686 AB034695 AK222741 AK304568 AK291831 BC017781 AF205940 AK026875 AK313504 NM_001159694 NM_016242	-495700	-	AL832277 BC013592 TSC_hg19_v1_chr4_-_101111626 AK312926 AK094236 NM_145244	-823230	-	TSC_hg19_v1_chr4_+_100871641 AK123926	-1063214	+	AB385587 AB451338 AB451487 AM393486 AM393713 CU693026 AY904364 BC025714 TSC_hg19_v1_chr4_-_102268080 L14778	333166	-	TSC_hg19_v1_chr4_-_102268343 AL353950	333512	-	AK290532 TSC_hg19_v1_chr4_-_102268547	333655	-	AB034695|EMCN|51705|endomucin##AK222741|EMCN|51705|endomucin##AK304568|EMCN|51705|endomucin##AK291831|EMCN|51705|endomucin##BC017781|EMCN|51705|endomucin##AF205940|EMCN|51705|endomucin##AK026875|EMCN|51705|endomucin##AK313504|EMCN|51705|endomucin##NM_001159694|EMCN|51705|endomucin##NM_016242|EMCN|51705|endomucin##AL832277|DDIT4L|115265|DNA-damage-inducible transcript 4-like##BC013592|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK312926|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK094236|DDIT4L|115265|DNA-damage-inducible transcript 4-like##NM_145244|DDIT4L|115265|DNA-damage-inducible transcript 4-like##AK123926|LOC256880|256880|uncharacterized LOC256880##AB451338|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AB451487|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393486|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AM393713|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AY904364|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##BC025714|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##L14778|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AL353950|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme##AK290532|PPP3CA|5530|protein phosphatase 3, catalytic subunit, alpha isozyme	1.065029	0.0	denovo_WM_7:-53:0.794
chr6	3804604	3804720	reg1011431.p2	3.765	+	NM_183373 TSC_hg19_v1_chr6_-_3752248	-52416	-	TSC_hg19_v1_chr6_-_3720312 BC031944	-84352	-	BC040876 NM_015482	-347899	-	BC001261 NM_012135 Y18503	44964	+	TSC_hg19_v1_chr6_+_4021647 BC034969 NM_003913 AK291244 AB011108 AF283465 AB385345 AY029347	216927	+	BC039349 NM_173563	274761	-	NM_183373|PXDC1|221749|PX domain containing 1##BC040876|SLC22A23|63027|solute carrier family 22, member 23##NM_015482|SLC22A23|63027|solute carrier family 22, member 23##BC001261|FAM50B|26240|family with sequence similarity 50, member B##NM_012135|FAM50B|26240|family with sequence similarity 50, member B##Y18503|FAM50B|26240|family with sequence similarity 50, member B##BC034969|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##NM_003913|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AK291244|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AB011108|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AF283465|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##AY029347|PRPF4B|8899|PRP4 pre-mRNA processing factor 4 homolog B (yeast)##BC039349|C6orf146|222826|chromosome 6 open reading frame 146##NM_173563|C6orf146|222826|chromosome 6 open reading frame 146	0.997765	0.0	denovo_WM_7:67:0.449	denovo_WM_7:68:0.449
chr7	5247088	5247177	reg1007071.p2	3.765	+	TSC_hg19_v1_chr7_+_5229923 AB463348 AM392901 AM393618 AM393628 CU675721 AY691425 CR533530	-17147	+	TSC_hg19_v1_chr7_+_5229917 BC021012 BC021068	-17217	+	TSC_hg19_v1_chr7_+_5229890 AK315468 BC004116 BC021200	-17235	+	BC016912 AF151808 NM_001033520 AY691426	6760	+	TSC_hg19_v1_chr7_+_5322595 AY485959 NM_001040661 NM_153247 AK092242 AX747426 AK296278 BC047592 BC025325	75474	+	TSC_hg19_v1_chr7_-_5460842 BC140723	213774	-	AM392901|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393618|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AM393628|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691425|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##CR533530|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021012|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021068|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AK315468|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC004116|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC021200|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##BC016912|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AF151808|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##NM_001033520|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY691426|WIPI2|26100|WD repeat domain, phosphoinositide interacting 2##AY485959|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_001040661|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##NM_153247|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK092242|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##AK296278|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC047592|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4##BC025325|SLC29A4|222962|solute carrier family 29 (nucleoside transporters), member 4	0.0	0.0	
chr9	109071890	109071963	reg1015964.p1	3.765	+	TSC_hg19_v1_chr9_+_108456900 AK309686 CR457258 CU674010	-615008	+	TSC_hg19_v1_chr9_+_108456821 AK001355 NM_018112 BC000049	-615073	+	BC126373 BC126375 NM_005421 AB464288 HQ258056 BC069422	-647169	+	TSC_hg19_v1_chr9_+_109625347 BX648965 NM_021224 AK127803	553438	+	TSC_hg19_v1_chr9_+_109686439 CR749850	614543	+	NM_002874 TSC_hg19_v1_chr9_+_110045549 AK293532	973606	+	AK309686|TMEM38B|55151|transmembrane protein 38B##CR457258|TMEM38B|55151|transmembrane protein 38B##AK001355|TMEM38B|55151|transmembrane protein 38B##NM_018112|TMEM38B|55151|transmembrane protein 38B##BC000049|TMEM38B|55151|transmembrane protein 38B##BC126373|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC126375|TAL2|6887|T-cell acute lymphocytic leukemia 2##NM_005421|TAL2|6887|T-cell acute lymphocytic leukemia 2##HQ258056|TAL2|6887|T-cell acute lymphocytic leukemia 2##BC069422|TAL2|6887|T-cell acute lymphocytic leukemia 2##BX648965|ZNF462|58499|zinc finger protein 462##NM_021224|ZNF462|58499|zinc finger protein 462##AK127803|ZNF462|58499|zinc finger protein 462##CR749850|ZNF462|58499|zinc finger protein 462##NM_002874|RAD23B|5887|RAD23 homolog B (S. cerevisiae)##AK293532|RAD23B|5887|RAD23 homolog B (S. cerevisiae)	1.971276	0.0	denovo_WM_7:-57:0.986	denovo_WM_7:-72:0.986
chrX	143761522	143761702	reg1015109.p1	3.765	+	GU727624 NM_001012989	-794440	+	NM_001009615	-957097	-	TSC_hg19_v1_chrX_-_142723922 NM_001184749	-1037689	-	DQ336118 DQ336119 DQ336120 DQ336121 NM_001009614	567494	+	TSC_hg19_v1_chrX_+_144899439 NM_001144003 NM_001144004 NM_001144005 NM_032539 AK096278 CR627412 AK289732	1137801	+	NM_001144006 NM_001144008 NM_001144009 NM_001144010 BC113011 BC113012 TSC_hg19_v1_chrX_+_144903056	1141352	+	GU727624|UBE2NL|389898|ubiquitin-conjugating enzyme E2N-like##NM_001012989|UBE2NL|389898|ubiquitin-conjugating enzyme E2N-like##NM_001009615|SPANXN2|494119|SPANX family, member N2##NM_001184749|SLITRK4|139065|SLIT and NTRK-like family, member 4##DQ336118|SPANXN1|494118|SPANX family, member N1##DQ336119|SPANXN1|494118|SPANX family, member N1##DQ336120|SPANXN1|494118|SPANX family, member N1##DQ336121|SPANXN1|494118|SPANX family, member N1##NM_001009614|SPANXN1|494118|SPANX family, member N1##NM_001144003|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144004|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144005|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_032539|SLITRK2|84631|SLIT and NTRK-like family, member 2##AK096278|SLITRK2|84631|SLIT and NTRK-like family, member 2##CR627412|SLITRK2|84631|SLIT and NTRK-like family, member 2##AK289732|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144006|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144008|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144009|SLITRK2|84631|SLIT and NTRK-like family, member 2##NM_001144010|SLITRK2|84631|SLIT and NTRK-like family, member 2##BC113011|SLITRK2|84631|SLIT and NTRK-like family, member 2##BC113012|SLITRK2|84631|SLIT and NTRK-like family, member 2	1.99237	0.0	
chr12	51059500	51059620	reg1019750.p1	3.764	+	TSC_hg19_v1_chr12_+_50898778 BC075027	-160661	+	TSC_hg19_v1_chr12_+_50898767 AK091597 AX747083 NM_173602	-160805	+	TSC_hg19_v1_chr12_+_50869532 AF131755	-189973	+	TSC_hg19_v1_chr12_+_51157883 NM_005171 AK313406 BC029619	98318	+	TSC_hg19_v1_chr12_+_51158275 AK299240	98698	+	NM_182559 BC035123 BC048112 CU690554	177163	+	BC075027|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AK091597|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##NM_173602|DIP2B|57609|DIP2 disco-interacting protein 2 homolog B (Drosophila)##AF131755|LARP4|113251|La ribonucleoprotein domain family, member 4##NM_005171|ATF1|466|activating transcription factor 1##AK313406|ATF1|466|activating transcription factor 1##BC029619|ATF1|466|activating transcription factor 1##AK299240|ATF1|466|activating transcription factor 1##NM_182559|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC035123|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12##BC048112|TMPRSS12|283471|transmembrane (C-terminal) protease, serine 12	0.991845	0.0	denovo_WM_7:6:0.323	denovo_WM_7:7:0.323	denovo_WM_7:8:0.323
chr1	36837361	36837449	reg1001652.p2	3.764	+	TSC_hg19_v1_chr1_-_36817157 AK023810	-20231	-	AK001509 NM_018166	-47651	-	TSC_hg19_v1_chr1_+_36772696 NM_024676 AK297015 AK056459	-64699	+	AL834137 NM_032017 BC008344 TSC_hg19_v1_chr1_-_36851499 BC007835 AY198395	14086	-	TSC_hg19_v1_chr1_-_36851517 AK075048	14118	-	AF394685 TSC_hg19_v1_chr1_-_36863508 AF166092 BC007623 NM_032881	26088	-	AK001509|FAM176B|55194|family with sequence similarity 176, member B##NM_018166|FAM176B|55194|family with sequence similarity 176, member B##NM_024676|SH3D21|79729|SH3 domain containing 21##AK297015|SH3D21|79729|SH3 domain containing 21##AK056459|SH3D21|79729|SH3 domain containing 21##AL834137|STK40|83931|serine/threonine kinase 40##NM_032017|STK40|83931|serine/threonine kinase 40##BC008344|STK40|83931|serine/threonine kinase 40##BC007835|STK40|83931|serine/threonine kinase 40##AY198395|STK40|83931|serine/threonine kinase 40##AK075048|STK40|83931|serine/threonine kinase 40##AF394685|LSM10|84967|LSM10, U7 small nuclear RNA associated##AF166092|LSM10|84967|LSM10, U7 small nuclear RNA associated##BC007623|LSM10|84967|LSM10, U7 small nuclear RNA associated##NM_032881|LSM10|84967|LSM10, U7 small nuclear RNA associated	1.066323	0.0	denovo_WM_7:37:0.221
chr16	22034982	22035132	reg1012846.p1	3.764	+	TSC_hg19_v1_chr16_+_22019464 NM_001164579 BC027604 BC053950	-15569	+	BC039562 BC021724 BC028605 NM_173806	-22629	-	TSC_hg19_v1_chr16_+_21964701 AB587386 DQ891390 DQ894565	-70336	+	AK098260 AK128606 AK307544 NM_173615	68804	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	182616	+	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	273691	+	NM_001164579|C16orf52|730094|chromosome 16 open reading frame 52##BC027604|C16orf52|730094|chromosome 16 open reading frame 52##BC053950|C16orf52|730094|chromosome 16 open reading frame 52##BC039562|PDZD9|255762|PDZ domain containing 9##BC021724|PDZD9|255762|PDZ domain containing 9##BC028605|PDZD9|255762|PDZ domain containing 9##NM_173806|PDZD9|255762|PDZ domain containing 9##DQ891390|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##DQ894565|UQCRC2|7385|ubiquinol-cytochrome c reductase core protein II##AK098260|VWA3A|146177|von Willebrand factor A domain containing 3A##AK128606|VWA3A|146177|von Willebrand factor A domain containing 3A##AK307544|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_173615|VWA3A|146177|von Willebrand factor A domain containing 3A##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)	0.0	0.0	
chr19	13172260	13172374	reg1017614.p2	3.764	+	HQ258405 TSC_hg19_v1_chr19_+_13135832 FJ861276 U07811	-36483	+	TSC_hg19_v1_chr19_+_13135745 L31881 BC117113 BC117115	-36557	+	TSC_hg19_v1_chr19_+_13135426 BX537794 AK295290	-36920	+	TSC_hg19_v1_chr19_+_13205957 BC036885	33673	+	TSC_hg19_v1_chr19_-_13213530 AK311530 M22637	41209	-	TSC_hg19_v1_chr19_-_13213673 BC002796	41380	-	HQ258405|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##FJ861276|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##U07811|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##L31881|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC117113|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC117115|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BX537794|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##AK295290|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##BC036885|NFIX|4784|nuclear factor I/X (CCAAT-binding transcription factor)##M22637|LYL1|4066|lymphoblastic leukemia derived sequence 1##BC002796|LYL1|4066|lymphoblastic leukemia derived sequence 1	0.0	0.0	
chr2	122743988	122744074	reg1016330.p2	3.764	+	NM_004622 TSC_hg19_v1_chr2_+_122513235 AK311410 AK315763 AK091915 BC002359 AK296469 AK298812 AK222868 X78627 AK307344 BT019490 BT019491	-230794	+	AB528916 DQ891678 DQ894863 CU692772 TSC_hg19_v1_chr2_-_122494472 AK311033 AK299814 BC022990 BC024238 AK291903 AB044971 NM_032390	-249566	-	BC047384 TSC_hg19_v1_chr2_+_122407687 BC036624 AK098264	-336386	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	2038833	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	4669676	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	4669761	+	NM_004622|TSN|7247|translin##AK311410|TSN|7247|translin##AK315763|TSN|7247|translin##AK091915|TSN|7247|translin##BC002359|TSN|7247|translin##AK296469|TSN|7247|translin##AK298812|TSN|7247|translin##AK222868|TSN|7247|translin##X78627|TSN|7247|translin##AK307344|TSN|7247|translin##BT019490|TSN|7247|translin##BT019491|TSN|7247|translin##DQ891678|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##DQ894863|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK311033|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK299814|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC022990|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC024238|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AK291903|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##AB044971|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##NM_032390|MKI67IP|84365|MKI67 (FHA domain) interacting nucleolar phosphoprotein##BC047384|LOC254128|254128|uncharacterized LOC254128##BC036624|LOC254128|254128|uncharacterized LOC254128##AK098264|LOC254128|254128|uncharacterized LOC254128##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)	0.999373	0.0	denovo_WM_7:-39:0.822
chr3	133269079	133269227	reg1012856.p1	3.764	+	NM_003571 BC113518 BC113520 HQ258421 U48224	-150295	+	TSC_hg19_v1_chr3_+_132757234 AY358381 BC000568	-511919	+	NM_001136469 NM_023943 TSC_hg19_v1_chr3_+_132757202	-511966	+	TSC_hg19_v1_chr3_+_133292443 NM_001134422 NM_017548	23323	+	TSC_hg19_v1_chr3_+_133292588 AF103803	23419	+	TSC_hg19_v1_chr3_+_133292835 BC007338	23641	+	NM_003571|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113518|BFSP2|8419|beaded filament structural protein 2, phakinin##BC113520|BFSP2|8419|beaded filament structural protein 2, phakinin##HQ258421|BFSP2|8419|beaded filament structural protein 2, phakinin##U48224|BFSP2|8419|beaded filament structural protein 2, phakinin##AY358381|TMEM108|66000|transmembrane protein 108##BC000568|TMEM108|66000|transmembrane protein 108##NM_001136469|TMEM108|66000|transmembrane protein 108##NM_023943|TMEM108|66000|transmembrane protein 108##NM_001134422|CDV3|55573|CDV3 homolog (mouse)##NM_017548|CDV3|55573|CDV3 homolog (mouse)##AF103803|CDV3|55573|CDV3 homolog (mouse)##BC007338|CDV3|55573|CDV3 homolog (mouse)	0.997527	0.0	denovo_WM_7:0:0.884
chr3	189819279	189819459	reg1004668.p2	3.764	+	AK304127 NM_001114980 NM_001114981 NM_001114982 GQ202689 GQ202690 AF091627 AB010153 AB042841 AF075429 AF075431 AF075433	-311851	+	BC039815 NM_001114978 NM_001114979 NM_003722 AB016072 AB016073 AF116771 Y16961 CU691766 EU446669	-470110	+	AK125682 NM_198485 BC101550 BC101552	-929558	+	TSC_hg19_v1_chr3_-_189838687 AK125134 AJ430351 AK056447	19326	-	NM_018192	19538	-	NM_001134418	20856	-	AK304127|TP63|8626|tumor protein p63##NM_001114980|TP63|8626|tumor protein p63##NM_001114981|TP63|8626|tumor protein p63##NM_001114982|TP63|8626|tumor protein p63##GQ202689|TP63|8626|tumor protein p63##GQ202690|TP63|8626|tumor protein p63##AF091627|TP63|8626|tumor protein p63##AB010153|TP63|8626|tumor protein p63##AB042841|TP63|8626|tumor protein p63##AF075429|TP63|8626|tumor protein p63##AF075431|TP63|8626|tumor protein p63##AF075433|TP63|8626|tumor protein p63##BC039815|TP63|8626|tumor protein p63##NM_001114978|TP63|8626|tumor protein p63##NM_001114979|TP63|8626|tumor protein p63##NM_003722|TP63|8626|tumor protein p63##AB016072|TP63|8626|tumor protein p63##AB016073|TP63|8626|tumor protein p63##AF116771|TP63|8626|tumor protein p63##Y16961|TP63|8626|tumor protein p63##EU446669|TP63|8626|tumor protein p63##AK125682|TPRG1|285386|tumor protein p63 regulated 1##NM_198485|TPRG1|285386|tumor protein p63 regulated 1##BC101550|TPRG1|285386|tumor protein p63 regulated 1##BC101552|TPRG1|285386|tumor protein p63 regulated 1##AK125134|LEPREL1|55214|leprecan-like 1##AJ430351|LEPREL1|55214|leprecan-like 1##AK056447|LEPREL1|55214|leprecan-like 1##NM_018192|LEPREL1|55214|leprecan-like 1##NM_001134418|LEPREL1|55214|leprecan-like 1	0.0	0.0	
chr3	51569575	51569707	reg1011225.p2	3.764	+	TSC_hg19_v1_chr3_-_51534015 AB018343 BC110371 NM_001171904 NM_014703	-35635	-	BC022792 TSC_hg19_v1_chr3_-_51533986	-35692	-	TSC_hg19_v1_chr3_+_51428730 BC121184 BC139836	-140891	+	AK122683 NM_015106	5954	+	NM_001129884 NM_001243727 NM_015926 TSC_hg19_v1_chr3_+_51705247 AK023997 AK222938 AK222949 BC008742 NM_001243725 NM_001243726 AY358972 BC001592	135625	+	NM_000839 NM_001130063 AK315816 AK289984 AK313056 BC041447	171451	+	AB018343|VPRBP|9730|Vpr (HIV-1) binding protein##BC110371|VPRBP|9730|Vpr (HIV-1) binding protein##NM_001171904|VPRBP|9730|Vpr (HIV-1) binding protein##NM_014703|VPRBP|9730|Vpr (HIV-1) binding protein##BC022792|VPRBP|9730|Vpr (HIV-1) binding protein##BC121184|RBM15B|29890|RNA binding motif protein 15B##BC139836|RBM15B|29890|RNA binding motif protein 15B##AK122683|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_015106|RAD54L2|23132|RAD54-like 2 (S. cerevisiae)##NM_001129884|TEX264|51368|testis expressed 264##NM_001243727|TEX264|51368|testis expressed 264##NM_015926|TEX264|51368|testis expressed 264##AK023997|TEX264|51368|testis expressed 264##AK222938|TEX264|51368|testis expressed 264##AK222949|TEX264|51368|testis expressed 264##BC008742|TEX264|51368|testis expressed 264##NM_001243725|TEX264|51368|testis expressed 264##NM_001243726|TEX264|51368|testis expressed 264##AY358972|TEX264|51368|testis expressed 264##BC001592|TEX264|51368|testis expressed 264##NM_000839|GRM2|2912|glutamate receptor, metabotropic 2##NM_001130063|GRM2|2912|glutamate receptor, metabotropic 2##AK315816|GRM2|2912|glutamate receptor, metabotropic 2##AK289984|GRM2|2912|glutamate receptor, metabotropic 2##AK313056|GRM2|2912|glutamate receptor, metabotropic 2##BC041447|GRM2|2912|glutamate receptor, metabotropic 2	0.997094	0.0	
chr7	1032897	1033023	reg1018599.p1	3.764	+	TSC_hg19_v1_chr7_+_1022978 AK000366	-9991	+	TSC_hg19_v1_chr7_+_1022816 BC025761 NM_017781	-10142	+	BC042434 BC053372 TSC_hg19_v1_chr7_-_1015171 BC058158 AK023185 BC110420 BC070383 AK290517 AY957566 BC103632 NM_001031617	-17771	-	TSC_hg19_v1_chr7_-_1067984 L07392 BC025971	34997	-	BC014241 NM_138445 AB464540 DQ892659 DQ895899	64184	+	NM_001039966 NM_001505 AF015257	93516	+	AK000366|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##BC025761|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##NM_017781|CYP2W1|54905|cytochrome P450, family 2, subfamily W, polypeptide 1##BC042434|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC053372|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC058158|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK023185|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC110420|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC070383|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##AK290517|ADAP1|11033|ArfGAP with dual PH domains 1##AY957566|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC103632|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##NM_001031617|COX19|90639|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)##BC025971|C7orf50|84310|chromosome 7 open reading frame 50##BC014241|GPR146|115330|G protein-coupled receptor 146##NM_138445|GPR146|115330|G protein-coupled receptor 146##DQ892659|GPR146|115330|G protein-coupled receptor 146##DQ895899|GPR146|115330|G protein-coupled receptor 146##NM_001039966|GPER|2852|G protein-coupled estrogen receptor 1##NM_001505|GPER|2852|G protein-coupled estrogen receptor 1##AF015257|GPER|2852|G protein-coupled estrogen receptor 1	0.0	0.893914	CTCF.p2:16:0.853
chr8	23084747	23084898	reg1015096.p3	3.764	+	TSC_hg19_v1_chr8_-_23082664 NM_003844	-2156	-	FJ795027 AB590225 BT006906 CU680426 DQ891791 DQ894973 JF729355 U90875 TSC_hg19_v1_chr8_-_23082598 AK291299 BC012866	-2210	-	AF023849 AF021232 AF021233 AF029761 AY358285 BC052270 AK313528 NM_003840 TSC_hg19_v1_chr8_-_23021544	-63327	-	AK097202 NM_152272 BC042050	16336	+	TSC_hg19_v1_chr8_+_23104147 AK315664 AK021776	19313	+	TSC_hg19_v1_chr8_+_23104153 AK092500 AX747573 AL833843 BC019110 AK296592 CU676386 BC004344	19420	+	NM_003844|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##FJ795027|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BT006906|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ891791|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##DQ894973|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##JF729355|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##U90875|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AK291299|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##BC012866|TNFRSF10A|8797|tumor necrosis factor receptor superfamily, member 10a##AF023849|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021232|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF021233|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AF029761|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AY358285|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##BC052270|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK313528|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##NM_003840|TNFRSF10D|8793|tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain##AK097202|CHMP7|91782|charged multivesicular body protein 7##NM_152272|CHMP7|91782|charged multivesicular body protein 7##BC042050|CHMP7|91782|charged multivesicular body protein 7##AK315664|CHMP7|91782|charged multivesicular body protein 7##AK021776|CHMP7|91782|charged multivesicular body protein 7##AK092500|CHMP7|91782|charged multivesicular body protein 7##AL833843|CHMP7|91782|charged multivesicular body protein 7##BC019110|CHMP7|91782|charged multivesicular body protein 7##AK296592|CHMP7|91782|charged multivesicular body protein 7##BC004344|CHMP7|91782|charged multivesicular body protein 7	0.997727	0.0	
chr1	145402199	145402330	reg1015493.p2	3.763	+	AY894562 AY894570 NM_001039703	-108963	+	TSC_hg19_v1_chr1_+_145209107 NM_203458 BC010154 AK075065 BC090943 BC019835 AK092351 AK098372 AX747492 BC065219 AK293876 BC084572	-193143	+	TSC_hg19_v1_chr1_+_145096519 CU674670 DQ892584 DQ895801	-305732	+	NM_145277 NM_202004 NM_213652 NM_213653 AK223575 AK092682 AK315852 AX747669 BC017926 AK096905 AK290831 AK292742 AK092692 AK124273 AX747673 BC085604	10999	+	TSC_hg19_v1_chr1_+_145438489 NM_006472 AK301203 BX537824 AK226090 S73591 BC093702 BC093704 AB527234 AY594328 BC024305 AK301148	36412	+	TSC_hg19_v1_chr1_-_145470375 AK092209 AK056984 BC004355 NM_032305 BC050418	68124	-	AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894570|NBPF8|728841|neuroblastoma breakpoint family, member 8##NM_001039703|NBPF10|100132406|neuroblastoma breakpoint family, member 10##NM_203458|NOTCH2NL|388677|notch 2 N-terminal like##BC010154|NOTCH2NL|388677|notch 2 N-terminal like##AK075065|NOTCH2NL|388677|notch 2 N-terminal like##BC090943|NOTCH2NL|388677|notch 2 N-terminal like##BC019835|NOTCH2NL|388677|notch 2 N-terminal like##BC065219|NOTCH2NL|388677|notch 2 N-terminal like##BC084572|NOTCH2NL|388677|notch 2 N-terminal like##DQ892584|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##DQ895801|SEC22B|9554|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)##NM_145277|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_202004|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213652|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213653|HFE2|148738|hemochromatosis type 2 (juvenile)##AK223575|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092682|HFE2|148738|hemochromatosis type 2 (juvenile)##AK315852|HFE2|148738|hemochromatosis type 2 (juvenile)##BC017926|HFE2|148738|hemochromatosis type 2 (juvenile)##AK096905|HFE2|148738|hemochromatosis type 2 (juvenile)##AK290831|HFE2|148738|hemochromatosis type 2 (juvenile)##AK292742|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092692|HFE2|148738|hemochromatosis type 2 (juvenile)##AK124273|HFE2|148738|hemochromatosis type 2 (juvenile)##BC085604|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_006472|TXNIP|10628|thioredoxin interacting protein##AK301203|TXNIP|10628|thioredoxin interacting protein##BX537824|TXNIP|10628|thioredoxin interacting protein##AK226090|TXNIP|10628|thioredoxin interacting protein##S73591|TXNIP|10628|thioredoxin interacting protein##BC093702|TXNIP|10628|thioredoxin interacting protein##BC093704|TXNIP|10628|thioredoxin interacting protein##AY594328|TXNIP|10628|thioredoxin interacting protein##BC024305|TXNIP|10628|thioredoxin interacting protein##AK301148|TXNIP|10628|thioredoxin interacting protein##AK092209|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK056984|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC004355|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##NM_032305|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC050418|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like	0.0	0.99649	CTCF.p2:-78:0.996
chr1	174938162	174938256	reg1009400.p2	3.763	+	AK316355 NM_001243764 AK316219 AK298711	-4288	+	NM_001035230 BC012094	-93540	+	NM_001243763 AL049701	-94650	+	NM_001007214 AK093425 AX748118	30374	+	TSC_hg19_v1_chr1_+_174968845 NM_014412	30658	+	TSC_hg19_v1_chr1_+_174969090 BC005975	30872	+	AK316355|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243764|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK316219|RABGAP1L|9910|RAB GTPase activating protein 1-like##AK298711|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001035230|RABGAP1L|9910|RAB GTPase activating protein 1-like##BC012094|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001243763|RABGAP1L|9910|RAB GTPase activating protein 1-like##AL049701|RABGAP1L|9910|RAB GTPase activating protein 1-like##NM_001007214|CACYBP|27101|calcyclin binding protein##AK093425|CACYBP|27101|calcyclin binding protein##NM_014412|CACYBP|27101|calcyclin binding protein##BC005975|CACYBP|27101|calcyclin binding protein	0.0	0.0	
chr16	28505560	28505730	reg1010855.p2	3.763	+	NM_001042432	-2023	-	AF077956 AF077957 AF077958 AF077959 AF077960 AF077961 AF077962 AF077963 AF077964 AF077965 AF077966 AF077967 AF077968 AF077969 AF077970 AF077971 AF077972 AF077973 AF078169 AF015596 AF078168 AF015593 AF015602 AF015599 AF015597 AF015594 AF015595 AF015598 AF015601 AF015600 U32680 TSC_hg19_v1_chr16_-_28503318 AK294070 BC111068 AK297690 AK295500 AK302027 BC002394 BC004433 AK302138 AK294250 AK313002 NM_000086	-2405	-	BC157842 AK292155 NM_001199142	-67927	-	TSC_hg19_v1_chr16_+_28505969 NM_018690 AF141332 AF141334 BC119786 BC119788	317	+	AY099296 CU687548 BC062422 NM_145659	12497	-	AB463938 BT006896 CR542144 TSC_hg19_v1_chr16_-_28550296 BC002434 AK312135 AF135266	44627	-	NM_001042432|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077956|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077957|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077958|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077959|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077960|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077961|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077962|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077963|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077964|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077965|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077966|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077967|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077968|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077969|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077970|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077971|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077972|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF077973|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078169|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015596|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF078168|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015593|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015602|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015599|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015597|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015594|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015595|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015598|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015601|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AF015600|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##U32680|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294070|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC111068|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK297690|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK295500|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302027|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC002394|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC004433|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK302138|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK294250|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##AK313002|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##NM_000086|CLN3|1201|ceroid-lipofuscinosis, neuronal 3##BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_018690|APOBR|55911|apolipoprotein B receptor##AF141332|APOBR|55911|apolipoprotein B receptor##AF141334|APOBR|55911|apolipoprotein B receptor##BC119786|APOBR|55911|apolipoprotein B receptor##BC119788|APOBR|55911|apolipoprotein B receptor##AY099296|IL27|246778|interleukin 27##BC062422|IL27|246778|interleukin 27##NM_145659|IL27|246778|interleukin 27##BT006896|NUPR1|26471|nuclear protein, transcriptional regulator, 1##CR542144|NUPR1|26471|nuclear protein, transcriptional regulator, 1##BC002434|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AK312135|NUPR1|26471|nuclear protein, transcriptional regulator, 1##AF135266|NUPR1|26471|nuclear protein, transcriptional regulator, 1	0.0	0.0	
chr17	27911879	27912014	reg1014190.p1	3.763	+	BC001593 NM_138349 TSC_hg19_v1_chr17_+_27895738	-16208	+	TSC_hg19_v1_chr17_+_27895730 AB110209 AK075341	-16239	+	TSC_hg19_v1_chr17_-_27894056 BC012476 NM_198147 AY358212	-17922	-	AB384970 AF124490 AB209537 AK299932 TSC_hg19_v1_chr17_-_27916543	4524	-	TSC_hg19_v1_chr17_-_27916606 BC067358 NM_001085454 NM_014030	4660	-	TSC_hg19_v1_chr17_-_27916646 AK294785 BC048196	4709	-	BC001593|TP53I13|90313|tumor protein p53 inducible protein 13##NM_138349|TP53I13|90313|tumor protein p53 inducible protein 13##AB110209|TP53I13|90313|tumor protein p53 inducible protein 13##AK075341|TP53I13|90313|tumor protein p53 inducible protein 13##BC012476|ABHD15|116236|abhydrolase domain containing 15##NM_198147|ABHD15|116236|abhydrolase domain containing 15##AY358212|ABHD15|116236|abhydrolase domain containing 15##AF124490|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##AB209537|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##AK299932|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##BC067358|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##NM_001085454|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##NM_014030|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##AK294785|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1##BC048196|GIT1|28964|G protein-coupled receptor kinase interacting ArfGAP 1	0.999544	0.0	
chr17	52935287	52935403	reg1018636.p2	3.763	+	NM_032559 AK057272 AF333335 BC033802 AK302262 AK308265 CU689754	-1035030	+	NM_001243552	-1872466	+	BC029865 TSC_hg19_v1_chr17_-_50237384 AF288385 NM_001082534	-2697982	-	TSC_hg19_v1_chr17_+_52978217 NM_005486 AK001893 AK309164 AK225351 AJ010071 AK303912 AK300823 AK303913 AK315039 AK315907 AK223125 BC029396 AB590855	42811	+	TSC_hg19_v1_chr17_-_53046016 AK293851 CR541837 DQ893136 DQ896418 AF044321 BC005895 AK295381 NM_001162861 NM_001162862 NM_004375	110672	-	TSC_hg19_v1_chr17_+_53046125 AK122865 NM_178509 BC125116 BC041485	110782	+	NM_032559|KIF2B|84643|kinesin family member 2B##AK057272|KIF2B|84643|kinesin family member 2B##AF333335|KIF2B|84643|kinesin family member 2B##BC033802|KIF2B|84643|kinesin family member 2B##AK302262|KIF2B|84643|kinesin family member 2B##NM_001243552|LOC100506650|100506650|uncharacterized LOC100506650##BC029865|CA10|56934|carbonic anhydrase X##AF288385|CA10|56934|carbonic anhydrase X##NM_001082534|CA10|56934|carbonic anhydrase X##NM_005486|TOM1L1|10040|target of myb1 (chicken)-like 1##AK001893|TOM1L1|10040|target of myb1 (chicken)-like 1##AK309164|TOM1L1|10040|target of myb1 (chicken)-like 1##AK225351|TOM1L1|10040|target of myb1 (chicken)-like 1##AJ010071|TOM1L1|10040|target of myb1 (chicken)-like 1##AK303912|TOM1L1|10040|target of myb1 (chicken)-like 1##AK300823|TOM1L1|10040|target of myb1 (chicken)-like 1##AK303913|TOM1L1|10040|target of myb1 (chicken)-like 1##AK315039|TOM1L1|10040|target of myb1 (chicken)-like 1##AK315907|TOM1L1|10040|target of myb1 (chicken)-like 1##AK223125|TOM1L1|10040|target of myb1 (chicken)-like 1##BC029396|TOM1L1|10040|target of myb1 (chicken)-like 1##AK293851|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##CR541837|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##DQ893136|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##DQ896418|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AF044321|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##BC005895|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AK295381|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_001162861|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_001162862|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##NM_004375|COX11|1353|COX11 cytochrome c oxidase assembly homolog (yeast)##AK122865|STXBP4|252983|syntaxin binding protein 4##NM_178509|STXBP4|252983|syntaxin binding protein 4##BC125116|STXBP4|252983|syntaxin binding protein 4##BC041485|STXBP4|252983|syntaxin binding protein 4	0.592664	0.0	denovo_WM_7:79:0.228	denovo_WM_7:80:0.206
chr2	127839489	127839575	reg1016038.p1	3.763	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	-425740	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	-425825	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-3056668	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	25209	-	BC039307 NM_001001665	123810	-	AK131190 TSC_hg19_v1_chr2_-_127977781	138185	-	BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1##BC039307|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##NM_001001665|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##AK131190|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1	0.0	0.0	
chr7	139925543	139925616	reg1012937.p2	3.763	+	TSC_hg19_v1_chr7_+_139877154 AK026372	-48423	+	TSC_hg19_v1_chr7_-_139876751 AB528281 AK131497 NM_030647	-48717	-	BC081541 NM_022750	-162059	-	AL136583 AL136583 TSC_hg19_v1_chr7_-_140098295 AK299276 BC028380 BC028380 BC046567 BC046567 AK296543 AK300265 AK074823 AK074823 NM_032295 NM_207113	172720	-	NM_001008749	178263	+	TSC_hg19_v1_chr7_-_140179165 AB209298 AB527778 DQ892404 EU176516 BC064838 AM236048 BC037400 BC051821 BC012398 AK297361 AK315552	253583	-	AK026372|LOC100134229|100134229|uncharacterized LOC100134229##AK131497|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##NM_030647|JHDM1D|80853|jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)##BC081541|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##NM_022750|PARP12|64761|poly (ADP-ribose) polymerase family, member 12##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AL136583|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK299276|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC028380|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##BC046567|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK296543|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK300265|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##AK074823|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_032295|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_207113|SLC37A3|84255|solute carrier family 37 (glycerol-3-phosphate transporter), member 3##NM_001008749|RAB19|401409|RAB19, member RAS oncogene family##AB209298|MKRN1|23608|makorin ring finger protein 1##DQ892404|MKRN1|23608|makorin ring finger protein 1##EU176516|MKRN1|23608|makorin ring finger protein 1##BC064838|MKRN1|23608|makorin ring finger protein 1##AM236048|MKRN1|23608|makorin ring finger protein 1##BC037400|MKRN1|23608|makorin ring finger protein 1##BC051821|MKRN1|23608|makorin ring finger protein 1##BC012398|MKRN1|23608|makorin ring finger protein 1##AK297361|MKRN1|23608|makorin ring finger protein 1##AK315552|MKRN1|23608|makorin ring finger protein 1	0.0	0.0	
chr8	91583380	91583474	reg1017697.p2	3.763	+	AB529128 X06661 BC006478 AK054881 AK312491 BC020864 NM_004929	-488412	-	NM_001359 BC105080 BC105082 BC143669 TSC_hg19_v1_chr8_+_91013704 AK300069 L26050	-569778	+	TSC_hg19_v1_chr8_-_90996896 AK001017 AK289848 BC071590 BC040519 BX640816 NM_002485 AK312410	-586523	-	AK300583 AK123958 AL834364 TSC_hg19_v1_chr8_-_91657856	74371	-	TSC_hg19_v1_chr8_-_91657970 AY147881 NM_001008495 NM_001146273	74588	-	AF414126 TSC_hg19_v1_chr8_+_91803956 NM_022351 AK095533 BC068448 AY224210	220518	+	X06661|CALB1|793|calbindin 1, 28kDa##BC006478|CALB1|793|calbindin 1, 28kDa##AK054881|CALB1|793|calbindin 1, 28kDa##AK312491|CALB1|793|calbindin 1, 28kDa##BC020864|CALB1|793|calbindin 1, 28kDa##NM_004929|CALB1|793|calbindin 1, 28kDa##NM_001359|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105080|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC105082|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##BC143669|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK300069|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##L26050|DECR1|1666|2,4-dienoyl CoA reductase 1, mitochondrial##AK001017|NBN|4683|nibrin##AK289848|NBN|4683|nibrin##BC071590|NBN|4683|nibrin##BC040519|NBN|4683|nibrin##BX640816|NBN|4683|nibrin##NM_002485|NBN|4683|nibrin##AK312410|NBN|4683|nibrin##AK300583|TMEM64|169200|transmembrane protein 64##AK123958|TMEM64|169200|transmembrane protein 64##AL834364|TMEM64|169200|transmembrane protein 64##AY147881|TMEM64|169200|transmembrane protein 64##NM_001008495|TMEM64|169200|transmembrane protein 64##NM_001146273|TMEM64|169200|transmembrane protein 64##AF414126|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##NM_022351|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AK095533|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##BC068448|NECAB1|64168|N-terminal EF-hand calcium binding protein 1##AY224210|NECAB1|64168|N-terminal EF-hand calcium binding protein 1	1.911686	0.332276	CTCF.p2:14:0.332	denovo_WM_7:-64:0.840	denovo_WM_7:-79:0.857
chr9	130748261	130748367	reg1012528.p2	3.763	+	TSC_hg19_v1_chr9_-_130742813 AK058004 NM_001035254	-5505	-	BC137087 BC137088 BC047949 NM_203305 BC142952	-35383	-	BC015233 NM_003863	-47552	-	AK122729 NM_197956	81284	-	TSC_hg19_v1_chr9_+_130830492 AK290991 NM_001006641	82169	+	AJ619990 TSC_hg19_v1_chr9_+_130830643	82305	+	AK058004|FAM102A|399665|family with sequence similarity 102, member A##NM_001035254|FAM102A|399665|family with sequence similarity 102, member A##BC137087|FAM102A|399665|family with sequence similarity 102, member A##BC137088|FAM102A|399665|family with sequence similarity 102, member A##BC047949|FAM102A|399665|family with sequence similarity 102, member A##NM_203305|FAM102A|399665|family with sequence similarity 102, member A##BC142952|FAM102A|399665|family with sequence similarity 102, member A##BC015233|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##NM_003863|DPM2|8818|dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit##AK122729|NAIF1|203245|nuclear apoptosis inducing factor 1##NM_197956|NAIF1|203245|nuclear apoptosis inducing factor 1##AK290991|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##NM_001006641|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25##AJ619990|SLC25A25|114789|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25	0.980879	0.0	denovo_WM_7:18:0.872
chr14	75981056	75981205	reg1014224.p1	3.762	+	BC051303 NM_001135049	-82294	+	NM_001135048 BC068196 NM_130469 TSC_hg19_v1_chr14_+_75895106	-86117	+	NM_001135047 TSC_hg19_v1_chr14_+_75894724	-86489	+	TSC_hg19_v1_chr14_+_75988794 NM_006399 BC032294 U15460	7660	+	TSC_hg19_v1_chr14_+_75988840 D42106	7722	+	NM_017791 AY260572 AY260577 BC019087 AK000378	63835	+	BC051303|JDP2|122953|Jun dimerization protein 2##NM_001135049|JDP2|122953|Jun dimerization protein 2##NM_001135048|JDP2|122953|Jun dimerization protein 2##BC068196|JDP2|122953|Jun dimerization protein 2##NM_130469|JDP2|122953|Jun dimerization protein 2##NM_001135047|JDP2|122953|Jun dimerization protein 2##NM_006399|BATF|10538|basic leucine zipper transcription factor, ATF-like##BC032294|BATF|10538|basic leucine zipper transcription factor, ATF-like##U15460|BATF|10538|basic leucine zipper transcription factor, ATF-like##D42106|BATF|10538|basic leucine zipper transcription factor, ATF-like##NM_017791|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260572|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AY260577|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##BC019087|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2##AK000378|FLVCR2|55640|feline leukemia virus subgroup C cellular receptor family, member 2	0.393118	0.0	
chr1	79934556	79934654	reg1004793.p2	3.762	+	BC025721 AY358360 AK292894 AK313738 NM_022159	-462178	-	NM_006417 TSC_hg19_v1_chr1_+_79115515 BC022870 AK316278 AK302527 AK316476	-819107	+	NM_006820 TSC_hg19_v1_chr1_+_79086139 AK316232 AK223087 AK303187 AK293385 AB000115 AK312272 BC015932 AK225442	-848474	+	BC031321 AK123422 TSC_hg19_v1_chr1_+_81772000	1837322	+	AF104266 AF104938 AF104939 NM_012302	2331476	+	AK097722 TSC_hg19_v1_chr1_-_84326308	4391663	-	BC025721|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AY358360|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK292894|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##AK313738|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_022159|ELTD1|64123|EGF, latrophilin and seven transmembrane domain containing 1##NM_006417|IFI44|10561|interferon-induced protein 44##BC022870|IFI44|10561|interferon-induced protein 44##AK302527|IFI44|10561|interferon-induced protein 44##AK316476|IFI44|10561|interferon-induced protein 44##NM_006820|IFI44L|10964|interferon-induced protein 44-like##AK316232|IFI44L|10964|interferon-induced protein 44-like##AK223087|IFI44L|10964|interferon-induced protein 44-like##AK303187|IFI44L|10964|interferon-induced protein 44-like##AK293385|IFI44L|10964|interferon-induced protein 44-like##AB000115|IFI44L|10964|interferon-induced protein 44-like##AK312272|IFI44L|10964|interferon-induced protein 44-like##BC015932|IFI44L|10964|interferon-induced protein 44-like##AK225442|IFI44L|10964|interferon-induced protein 44-like##BC031321|LPHN2|23266|latrophilin 2##AK123422|LPHN2|23266|latrophilin 2##AF104266|LPHN2|23266|latrophilin 2##AF104938|LPHN2|23266|latrophilin 2##AF104939|LPHN2|23266|latrophilin 2##NM_012302|LPHN2|23266|latrophilin 2	0.343422	0.0	denovo_WM_7:3:0.232
chr19	42007168	42007307	reg1013460.p1	3.762	+	NM_001130514	-58175	+	TSC_hg19_v1_chr19_-_41945831 AK298197 NM_001167869 NM_001167870 NM_001167871 NM_018035	-61404	-	TSC_hg19_v1_chr19_-_41945814 BC013323 AK316313	-61423	-	BC012001 NM_001098506 NM_033543 TSC_hg19_v1_chr19_+_42082583 AY358084 BC106727 CU680160	75340	+	D90276 AK298701 NM_001817	126197	-	AF006622 AF006623 L31792 NM_006890 X98311 BC121132 TSC_hg19_v1_chr19_-_42192198 AK292213 AK296634 AK311285 AK313108	184915	-	NM_001130514|C19orf69|100170765|chromosome 19 open reading frame 69##AK298197|ATP5SL|55101|ATP5S-like##NM_001167869|ATP5SL|55101|ATP5S-like##NM_001167870|ATP5SL|55101|ATP5S-like##NM_001167871|ATP5SL|55101|ATP5S-like##NM_018035|ATP5SL|55101|ATP5S-like##BC013323|ATP5SL|55101|ATP5S-like##AK316313|ATP5SL|55101|ATP5S-like##BC012001|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##NM_001098506|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##NM_033543|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##AY358084|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##BC106727|CEACAM21|90273|carcinoembryonic antigen-related cell adhesion molecule 21##D90276|CEACAM4|1089|carcinoembryonic antigen-related cell adhesion molecule 4##AK298701|CEACAM4|1089|carcinoembryonic antigen-related cell adhesion molecule 4##NM_001817|CEACAM4|1089|carcinoembryonic antigen-related cell adhesion molecule 4##AF006622|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AF006623|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##L31792|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##NM_006890|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##X98311|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##BC121132|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK292213|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK296634|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK311285|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7##AK313108|CEACAM7|1087|carcinoembryonic antigen-related cell adhesion molecule 7	1.99036	0.0	denovo_WM_7:18:0.270	denovo_WM_7:19:0.726	denovo_WM_7:34:0.859
chr21	42895929	42896045	reg1015050.p2	3.762	+	TSC_hg19_v1_chr21_-_42880086 BC015819 NM_005656	-15904	-	TSC_hg19_v1_chr21_-_42880078 AF329454 EU090249 HM245389 HM245390	-15910	-	AK291813 TSC_hg19_v1_chr21_-_42880030 AK296860 NM_001135099 BC051839 AF270487 BC035623	-16000	-	TSC_hg19_v1_chr21_-_43187213 EU832165 EU832259 BC035755 BC110617 BC110618 AB047783 AJ278016 NM_020639	291235	-	AK027424 TSC_hg19_v1_chr21_-_43187270	291280	-	TSC_hg19_v1_chr21_-_43299444 BC032305 AB051812 AB051813 AB051814 AB051815 NM_001040424 AF276513 AY078498 NM_022115	403511	-	BC015819|TMPRSS2|7113|transmembrane protease, serine 2##NM_005656|TMPRSS2|7113|transmembrane protease, serine 2##AF329454|TMPRSS2|7113|transmembrane protease, serine 2##EU090249|TMPRSS2|7113|transmembrane protease, serine 2##HM245389|TMPRSS2|7113|transmembrane protease, serine 2##HM245390|TMPRSS2|7113|transmembrane protease, serine 2##AK291813|TMPRSS2|7113|transmembrane protease, serine 2##AK296860|TMPRSS2|7113|transmembrane protease, serine 2##NM_001135099|TMPRSS2|7113|transmembrane protease, serine 2##BC051839|TMPRSS2|7113|transmembrane protease, serine 2##AF270487|TMPRSS2|7113|transmembrane protease, serine 2##BC035623|TMPRSS2|7113|transmembrane protease, serine 2##EU832165|RIPK4|54101|receptor-interacting serine-threonine kinase 4##EU832259|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC035755|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110617|RIPK4|54101|receptor-interacting serine-threonine kinase 4##BC110618|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB047783|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AJ278016|RIPK4|54101|receptor-interacting serine-threonine kinase 4##NM_020639|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AK027424|RIPK4|54101|receptor-interacting serine-threonine kinase 4##AB051812|PRDM15|63977|PR domain containing 15##AB051813|PRDM15|63977|PR domain containing 15##AB051814|PRDM15|63977|PR domain containing 15##AB051815|PRDM15|63977|PR domain containing 15##NM_001040424|PRDM15|63977|PR domain containing 15##AF276513|PRDM15|63977|PR domain containing 15##AY078498|PRDM15|63977|PR domain containing 15##NM_022115|PRDM15|63977|PR domain containing 15	1.995085	0.0	denovo_WM_7:64:0.359	denovo_WM_7:65:0.269	denovo_WM_7:81:0.289	denovo_WM_7:82:0.378
chr22	41491148	41491270	reg1015883.p1	3.762	+	TSC_hg19_v1_chr22_+_41488610 NM_001429 BC053889	-2583	+	TSC_hg19_v1_chr22_+_41487787 U01877	-3419	+	TSC_hg19_v1_chr22_+_41347389 BC017370 CR456560 AK315722 AF140598 BC001466 AB590096 AF142059 CU013160 CU013448 CU674722 AF085906 AY099360	-143803	+	TSC_hg19_v1_chr22_-_41593483 BC040700	102280	-	AK097052 TSC_hg19_v1_chr22_+_41601315 AL136564 NM_031488 AK056443 AK307763 BC017191 AK074091 AJ305226 AJ305227 CR456482 AB463092 AM392807 AM393641 CU013032 CU013320 CU677853 DQ892312 DQ895512	110116	+	TSC_hg19_v1_chr22_-_41634074 BC048421	142892	-	NM_001429|EP300|2033|E1A binding protein p300##BC053889|EP300|2033|E1A binding protein p300##U01877|EP300|2033|E1A binding protein p300##BC017370|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CR456560|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK315722|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF140598|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##BC001466|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF142059|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013160|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##CU013448|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AF085906|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AY099360|RBX1|9978|ring-box 1, E3 ubiquitin protein ligase##AK097052|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AL136564|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##NM_031488|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK056443|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK307763|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##BC017191|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AK074091|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AJ305226|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AJ305227|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CR456482|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AM392807|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##AM393641|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CU013032|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##CU013320|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##DQ892312|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##DQ895512|L3MBTL2|83746|l(3)mbt-like 2 (Drosophila)##BC048421|CHADL|150356|chondroadherin-like	0.997718	0.0	
chr4	6855945	6856065	reg1017043.p1	3.762	+	TSC_hg19_v1_chr4_+_6784518 AK124715 EF553521	-71477	+	TSC_hg19_v1_chr4_+_6784467 BC150286 D86985	-71531	+	TSC_hg19_v1_chr4_+_6784458 NM_001100590 NM_014743	-71550	+	TSC_hg19_v1_chr4_+_6911192 NM_001113361	55147	+	TSC_hg19_v1_chr4_-_6911379 BC032036	55400	-	TSC_hg19_v1_chr4_+_6911497 NM_020773	55471	+	AK124715|KIAA0232|9778|KIAA0232##EF553521|KIAA0232|9778|KIAA0232##BC150286|KIAA0232|9778|KIAA0232##D86985|KIAA0232|9778|KIAA0232##NM_001100590|KIAA0232|9778|KIAA0232##NM_014743|KIAA0232|9778|KIAA0232##NM_001113361|TBC1D14|57533|TBC1 domain family, member 14##NM_020773|TBC1D14|57533|TBC1 domain family, member 14	0.0	0.0	
chr10	112224999	112225120	reg1011909.p2	3.761	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-160359	-	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	-160466	-	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	-239238	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	32692	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	102433	+	AF067163 TSC_hg19_v1_chr10_+_112344155	119056	+	BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##AF067163|SMC3|9126|structural maintenance of chromosomes 3	0.997794	0.0	denovo_WM_7:-10:0.571
chr1	236444071	236444153	reg1017875.p1	3.761	+	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-138236	+	TSC_hg19_v1_chr1_-_236228670 BC012501	-215372	-	TSC_hg19_v1_chr1_-_236228496 AK297234	-215614	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	1076	-	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	1204	-	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	113571	+	BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##BC012501|NID1|4811|nidogen 1##AK297234|NID1|4811|nidogen 1##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain	0.101409	0.0	
chr1	36234109	36234262	reg1012383.p1	3.761	+	TSC_hg19_v1_chr1_-_36184816 AK096303 NM_152374	-49394	-	TSC_hg19_v1_chr1_-_36184424 BC026909 AK294352	-49773	-	NM_002794	-126741	-	TSC_hg19_v1_chr1_-_36235569 BC113116 BC115023 BC115024 BC115025 BC115026 BC115027 BC137279 BC140789 AF297866 NM_001190481 NM_022111 BC038991 BC018670 BC062215 AK308193	1330	-	TSC_hg19_v1_chr1_+_36273802 AB046787 BC152450 NM_017629	39635	+	TSC_hg19_v1_chr1_+_36348795 AF093097 NM_012199	114618	+	AK096303|C1orf216|127703|chromosome 1 open reading frame 216##NM_152374|C1orf216|127703|chromosome 1 open reading frame 216##BC026909|C1orf216|127703|chromosome 1 open reading frame 216##AK294352|C1orf216|127703|chromosome 1 open reading frame 216##NM_002794|PSMB2|5690|proteasome (prosome, macropain) subunit, beta type, 2##BC113116|CLSPN|63967|claspin##BC115023|CLSPN|63967|claspin##BC115024|CLSPN|63967|claspin##BC115025|CLSPN|63967|claspin##BC115026|CLSPN|63967|claspin##BC115027|CLSPN|63967|claspin##BC137279|CLSPN|63967|claspin##BC140789|CLSPN|63967|claspin##AF297866|CLSPN|63967|claspin##NM_001190481|CLSPN|63967|claspin##NM_022111|CLSPN|63967|claspin##BC038991|CLSPN|63967|claspin##BC018670|CLSPN|63967|claspin##BC062215|CLSPN|63967|claspin##AK308193|CLSPN|63967|claspin##AB046787|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##BC152450|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##NM_017629|EIF2C4|192670|eukaryotic translation initiation factor 2C, 4##AF093097|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1##NM_012199|EIF2C1|26523|eukaryotic translation initiation factor 2C, 1	0.990934	0.0	denovo_WM_7:3:0.811
chrX	14908462	14908569	reg1012852.p2	3.761	+	AK093075 AX747905 NM_001177475	-5103	+	NM_152581 TSC_hg19_v1_chrX_+_14891582 BC030641 AL832230 AK315781	-16959	+	TSC_hg19_v1_chrX_-_14891182 BC136558 BC136560 BC043596 BC055411 NM_001018113 NM_152633 AK091383 AX746948	-17340	-	BC001244 AK000643 BC013172 NM_001031739 NM_001168530 NM_024087	379717	-	AK292270 NM_001168531	380073	-	BX537853 NM_001012428	424165	-	AK093075|MOSPD2|158747|motile sperm domain containing 2##NM_001177475|MOSPD2|158747|motile sperm domain containing 2##NM_152581|MOSPD2|158747|motile sperm domain containing 2##BC030641|MOSPD2|158747|motile sperm domain containing 2##AL832230|MOSPD2|158747|motile sperm domain containing 2##AK315781|MOSPD2|158747|motile sperm domain containing 2##BC136558|FANCB|2187|Fanconi anemia, complementation group B##BC136560|FANCB|2187|Fanconi anemia, complementation group B##BC043596|FANCB|2187|Fanconi anemia, complementation group B##BC055411|FANCB|2187|Fanconi anemia, complementation group B##NM_001018113|FANCB|2187|Fanconi anemia, complementation group B##NM_152633|FANCB|2187|Fanconi anemia, complementation group B##AK091383|FANCB|2187|Fanconi anemia, complementation group B##BC001244|ASB9|140462|ankyrin repeat and SOCS box containing 9##AK000643|ASB9|140462|ankyrin repeat and SOCS box containing 9##BC013172|ASB9|140462|ankyrin repeat and SOCS box containing 9##NM_001031739|ASB9|140462|ankyrin repeat and SOCS box containing 9##NM_001168530|ASB9|140462|ankyrin repeat and SOCS box containing 9##NM_024087|ASB9|140462|ankyrin repeat and SOCS box containing 9##AK292270|ASB9|140462|ankyrin repeat and SOCS box containing 9##NM_001168531|ASB9|140462|ankyrin repeat and SOCS box containing 9##BX537853|ASB11|140456|ankyrin repeat and SOCS box containing 11##NM_001012428|ASB11|140456|ankyrin repeat and SOCS box containing 11	0.0	0.0	
chr10	115830643	115830738	reg1017142.p1	3.760	+	NM_000684 J03019	-26881	+	TSC_hg19_v1_chr10_+_115614419 NM_198514 AK090631 AX746547	-216271	+	D42045 NM_014881 AK307187	-216774	-	TSC_hg19_v1_chr10_-_115933963 BC100670 BC103499 BC103504 BC105632 BC152306 BC107430 BC070368 BX537964 AK307517 AK092620 AX747632 BC020842 BC030557	103242	-	NM_018017	103673	-	AK122916 AL833340 NM_198795 BX648664 BC063133	108381	+	NM_000684|ADRB1|153|adrenergic, beta-1-, receptor##J03019|ADRB1|153|adrenergic, beta-1-, receptor##NM_198514|NHLRC2|374354|NHL repeat containing 2##AK090631|NHLRC2|374354|NHL repeat containing 2##D42045|DCLRE1A|9937|DNA cross-link repair 1A##NM_014881|DCLRE1A|9937|DNA cross-link repair 1A##BC100670|C10orf118|55088|chromosome 10 open reading frame 118##BC103499|C10orf118|55088|chromosome 10 open reading frame 118##BC103504|C10orf118|55088|chromosome 10 open reading frame 118##BC105632|C10orf118|55088|chromosome 10 open reading frame 118##BC152306|C10orf118|55088|chromosome 10 open reading frame 118##BC107430|C10orf118|55088|chromosome 10 open reading frame 118##BC070368|C10orf118|55088|chromosome 10 open reading frame 118##BX537964|C10orf118|55088|chromosome 10 open reading frame 118##AK307517|C10orf118|55088|chromosome 10 open reading frame 118##AK092620|C10orf118|55088|chromosome 10 open reading frame 118##BC020842|C10orf118|55088|chromosome 10 open reading frame 118##BC030557|C10orf118|55088|chromosome 10 open reading frame 118##NM_018017|C10orf118|55088|chromosome 10 open reading frame 118##AK122916|TDRD1|56165|tudor domain containing 1##AL833340|TDRD1|56165|tudor domain containing 1##NM_198795|TDRD1|56165|tudor domain containing 1##BX648664|TDRD1|56165|tudor domain containing 1##BC063133|TDRD1|56165|tudor domain containing 1	0.183259	0.0	
chr12	31905095	31905244	reg1005598.p2	3.760	+	TSC_hg19_v1_chr12_-_31882017 BC037897 AK311214 BC045831 NM_001113402	-23113	-	TSC_hg19_v1_chr12_-_31881956 AK123033 AK302112 AK311249 AL833434 BC067906	-23195	-	NM_001135863 TSC_hg19_v1_chr12_+_31812621 AL832339 BC039107	-92555	+	BC066906 HQ873957 NM_001013699 TSC_hg19_v1_chr12_-_31945232	40035	-	TSC_hg19_v1_chr12_+_32112348 NM_018169	207162	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	207225	+	BC037897|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311214|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC045831|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001113402|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK123033|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK302112|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AK311249|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##AL833434|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##BC067906|AMN1|196394|antagonist of mitotic exit network 1 homolog (S. cerevisiae)##NM_001135863|METTL20|254013|methyltransferase like 20##AL832339|METTL20|254013|methyltransferase like 20##BC039107|METTL20|254013|methyltransferase like 20##BC066906|H3F3C|440093|H3 histone, family 3C##HQ873957|H3F3C|440093|H3 histone, family 3C##NM_001013699|H3F3C|440093|H3 histone, family 3C##NM_018169|C12orf35|55196|chromosome 12 open reading frame 35##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35	0.0	0.0	
chr12	48550699	48550839	reg1019536.p1	3.760	+	D21861 NM_001166687 NM_001166688 Y00698 BC000534 BC012799 BC013298 AB463168 CU674264 CU676868 BC007798	-34274	+	NM_000289 D21862 TSC_hg19_v1_chr12_+_48513146 M26066 U24183 AK312284 BC021203	-37683	+	TSC_hg19_v1_chr12_-_48499846 AK292060 AK312874	-50804	-	TSC_hg19_v1_chr12_-_48551274 AF464877 AK024908 BC001321 AK297013 AK289957 NM_024095	553	-	NM_001013635 AK056003 BC036801 TSC_hg19_v1_chr12_+_48577419 BC049387	26636	+	TSC_hg19_v1_chr12_+_48592139 AK125945 CR749551	41385	+	D21861|PFKM|5213|phosphofructokinase, muscle##NM_001166687|PFKM|5213|phosphofructokinase, muscle##NM_001166688|PFKM|5213|phosphofructokinase, muscle##Y00698|PFKM|5213|phosphofructokinase, muscle##BC000534|PFKM|5213|phosphofructokinase, muscle##BC012799|PFKM|5213|phosphofructokinase, muscle##BC013298|PFKM|5213|phosphofructokinase, muscle##BC007798|PFKM|5213|phosphofructokinase, muscle##NM_000289|PFKM|5213|phosphofructokinase, muscle##M26066|PFKM|5213|phosphofructokinase, muscle##U24183|PFKM|5213|phosphofructokinase, muscle##AK312284|PFKM|5213|phosphofructokinase, muscle##BC021203|PFKM|5213|phosphofructokinase, muscle##AK292060|SENP1|29843|SUMO1/sentrin specific peptidase 1##AK312874|SENP1|29843|SUMO1/sentrin specific peptidase 1##AF464877|ASB8|140461|ankyrin repeat and SOCS box containing 8##AK024908|ASB8|140461|ankyrin repeat and SOCS box containing 8##BC001321|ASB8|140461|ankyrin repeat and SOCS box containing 8##AK297013|ASB8|140461|ankyrin repeat and SOCS box containing 8##AK289957|ASB8|140461|ankyrin repeat and SOCS box containing 8##NM_024095|ASB8|140461|ankyrin repeat and SOCS box containing 8##NM_001013635|C12orf68|387856|chromosome 12 open reading frame 68##AK056003|C12orf68|387856|chromosome 12 open reading frame 68##BC036801|C12orf68|387856|chromosome 12 open reading frame 68##BC049387|C12orf68|387856|chromosome 12 open reading frame 68##AK125945|DKFZP779L1853|643162|uncharacterized LOC643162##CR749551|DKFZP779L1853|643162|uncharacterized LOC643162	0.999287	0.0	
chr17	43662848	43662975	reg1016296.p1	3.760	+	TSC_hg19_v1_chr17_-_43568133 NM_014798	-94757	-	TSC_hg19_v1_chr17_-_43568118 AK299116 BC053848 AB002354 BC064361	-94809	-	TSC_hg19_v1_chr17_-_43510292 BC067345 NM_174919	-152624	-	TSC_hg19_v1_chr17_+_43861628 NM_001145146 NM_001145147 NM_001145148 NM_004382	198725	+	BC037967 HM852949 TSC_hg19_v1_chr17_+_43861685 X72304	198767	+	BC025401 NM_175882 BC022041	259345	+	NM_014798|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##AK299116|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##BC053848|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##AB002354|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##BC064361|PLEKHM1|9842|pleckstrin homology domain containing, family M (with RUN domain) member 1##BC067345|ARHGAP27|201176|Rho GTPase activating protein 27##NM_174919|ARHGAP27|201176|Rho GTPase activating protein 27##NM_001145146|CRHR1|1394|corticotropin releasing hormone receptor 1##NM_001145147|CRHR1|1394|corticotropin releasing hormone receptor 1##NM_001145148|CRHR1|1394|corticotropin releasing hormone receptor 1##NM_004382|CRHR1|1394|corticotropin releasing hormone receptor 1##BC037967|CRHR1|1394|corticotropin releasing hormone receptor 1##X72304|CRHR1|1394|corticotropin releasing hormone receptor 1##BC025401|IMP5|162540|intramembrane protease 5##NM_175882|IMP5|162540|intramembrane protease 5##BC022041|IMP5|162540|intramembrane protease 5	0.081012	0.0	
chr19	10908125	10908218	reg1013900.p1	3.760	+	TSC_hg19_v1_chr19_+_10828827 BC039596 AK289831	-79312	+	TSC_hg19_v1_chr19_+_10828773 L36983	-79399	+	TSC_hg19_v1_chr19_+_10828765 BC054501	-79404	+	AB528501 DQ892640 DQ895878 BC002443 BC018831 TSC_hg19_v1_chr19_-_10946889 U41804 NM_006858	38753	-	BC157863 NM_001136482	50934	+	TSC_hg19_v1_chr19_+_10982255 NM_199141	74079	+	BC039596|DNM2|1785|dynamin 2##AK289831|DNM2|1785|dynamin 2##L36983|DNM2|1785|dynamin 2##BC054501|DNM2|1785|dynamin 2##DQ892640|TMED1|11018|transmembrane emp24 protein transport domain containing 1##DQ895878|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC002443|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC018831|TMED1|11018|transmembrane emp24 protein transport domain containing 1##U41804|TMED1|11018|transmembrane emp24 protein transport domain containing 1##NM_006858|TMED1|11018|transmembrane emp24 protein transport domain containing 1##BC157863|C19orf38|255809|chromosome 19 open reading frame 38##NM_001136482|C19orf38|255809|chromosome 19 open reading frame 38##NM_199141|CARM1|10498|coactivator-associated arginine methyltransferase 1	0.0	0.0	
chr8	100675755	100675870	reg1010159.p1	3.760	+	TSC_hg19_v1_chr8_+_100025537 BC094749	-650222	+	AJ608772 AJ608773 TSC_hg19_v1_chr8_+_100025501	-650300	+	AY223814 AY223815 AY223816 AY223817 AY223818 NM_015243 NM_017890 NM_152564 NM_181661 TSC_hg19_v1_chr8_+_100025498	-650317	+	TSC_hg19_v1_chr8_-_100905892 X13238	230067	-	TSC_hg19_v1_chr8_-_100905910 AK311791	230109	-	NM_004374	230429	-	BC094749|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608772|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AJ608773|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223814|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223815|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223816|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223817|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##AY223818|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_015243|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_017890|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_152564|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##NM_181661|VPS13B|157680|vacuolar protein sorting 13 homolog B (yeast)##X13238|COX6C|1345|cytochrome c oxidase subunit VIc##AK311791|COX6C|1345|cytochrome c oxidase subunit VIc##NM_004374|COX6C|1345|cytochrome c oxidase subunit VIc	0.121848	0.0	
chr1	158800050	158800117	reg1015830.p1	3.759	+	NM_001005278	-52659	-	NM_001005185 BC146847	-63602	-	BC140743 NM_001005184	-75526	+	TSC_hg19_v1_chr1_+_158801140 BC020715 BC032319 AK290392 AK313210 M81750 NM_002432	1053	+	NM_152501 NM_198928 NM_198929 NM_198930 AY185344 AY185345 AY185346 AY185347 BC090944 AK308350 BC020822 BC073133 BC114470 BC139741	101276	+	NM_001206567 NM_005531 TSC_hg19_v1_chr1_+_158979716 AF208043 M63838 AB208989 BC017059 AF086545 AK296228 AK307957	179707	+	NM_001005278|OR6N2|81442|olfactory receptor, family 6, subfamily N, member 2##NM_001005185|OR6N1|128372|olfactory receptor, family 6, subfamily N, member 1##BC146847|OR6N1|128372|olfactory receptor, family 6, subfamily N, member 1##BC140743|OR6K6|128371|olfactory receptor, family 6, subfamily K, member 6##NM_001005184|OR6K6|128371|olfactory receptor, family 6, subfamily K, member 6##BC020715|MNDA|4332|myeloid cell nuclear differentiation antigen##BC032319|MNDA|4332|myeloid cell nuclear differentiation antigen##AK290392|MNDA|4332|myeloid cell nuclear differentiation antigen##AK313210|MNDA|4332|myeloid cell nuclear differentiation antigen##M81750|MNDA|4332|myeloid cell nuclear differentiation antigen##NM_002432|MNDA|4332|myeloid cell nuclear differentiation antigen##NM_152501|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198928|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198929|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_198930|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185344|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185345|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185346|PYHIN1|149628|pyrin and HIN domain family, member 1##AY185347|PYHIN1|149628|pyrin and HIN domain family, member 1##BC090944|PYHIN1|149628|pyrin and HIN domain family, member 1##AK308350|PYHIN1|149628|pyrin and HIN domain family, member 1##BC020822|PYHIN1|149628|pyrin and HIN domain family, member 1##BC073133|PYHIN1|149628|pyrin and HIN domain family, member 1##BC114470|PYHIN1|149628|pyrin and HIN domain family, member 1##BC139741|PYHIN1|149628|pyrin and HIN domain family, member 1##NM_001206567|IFI16|3428|interferon, gamma-inducible protein 16##NM_005531|IFI16|3428|interferon, gamma-inducible protein 16##AF208043|IFI16|3428|interferon, gamma-inducible protein 16##M63838|IFI16|3428|interferon, gamma-inducible protein 16##AB208989|IFI16|3428|interferon, gamma-inducible protein 16##BC017059|IFI16|3428|interferon, gamma-inducible protein 16##AF086545|IFI16|3428|interferon, gamma-inducible protein 16##AK296228|IFI16|3428|interferon, gamma-inducible protein 16##AK307957|IFI16|3428|interferon, gamma-inducible protein 16	0.0	0.0	
chr14	91475980	91476116	reg1008641.p1	3.759	+	NM_001010854 TSC_hg19_v1_chr14_-_91282765	-193283	-	AB527232 TSC_hg19_v1_chr14_-_91282750	-193350	-	TSC_hg19_v1_chr14_+_90863372 BC011834 BC047523 U16851 BC000454 BC008597 AK289937 M27319	-612621	+	TSC_hg19_v1_chr14_-_91526731 CU677851	50706	-	TSC_hg19_v1_chr14_-_91526968 AF090421 AF074393 AF080000 BC017187 AK309925 NM_004755 NM_182398	50922	-	NM_001102366 NM_001102368 NM_001102369 NM_024952 TSC_hg19_v1_chr14_+_91580416 AK097294 AK098752 BX537970 BX161393 BX247989 BC009182 AK308857 AB210031	104357	+	NM_001010854|TTC7B|145567|tetratricopeptide repeat domain 7B##BC011834|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC047523|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##U16851|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC000454|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##BC008597|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AK289937|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##M27319|CALM1|801|calmodulin 1 (phosphorylase kinase, delta)##AF090421|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF074393|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AF080000|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##BC017187|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##AK309925|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_004755|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_182398|RPS6KA5|9252|ribosomal protein S6 kinase, 90kDa, polypeptide 5##NM_001102366|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102368|C14orf159|80017|chromosome 14 open reading frame 159##NM_001102369|C14orf159|80017|chromosome 14 open reading frame 159##NM_024952|C14orf159|80017|chromosome 14 open reading frame 159##AK097294|C14orf159|80017|chromosome 14 open reading frame 159##AK098752|C14orf159|80017|chromosome 14 open reading frame 159##BX537970|C14orf159|80017|chromosome 14 open reading frame 159##BX161393|C14orf159|80017|chromosome 14 open reading frame 159##BX247989|C14orf159|80017|chromosome 14 open reading frame 159##BC009182|C14orf159|80017|chromosome 14 open reading frame 159##AK308857|C14orf159|80017|chromosome 14 open reading frame 159##AB210031|C14orf159|80017|chromosome 14 open reading frame 159	0.0	0.0	
chr1	52192718	52192824	reg1005006.p2	3.759	+	TSC_hg19_v1_chr1_+_52082763 AK056617 AK091703 AK027535 AF392445 AY178997	-110004	+	NM_024586 NM_148906 NM_148908 NM_148909	-110226	+	NM_001981 Z29064 TSC_hg19_v1_chr1_-_51985031	-207747	-	TSC_hg19_v1_chr1_+_52195487 NM_148904 NM_148905 NM_148907 AK315167	2706	+	TSC_hg19_v1_chr1_+_52195549 AK027707 BC025978	2775	+	TSC_hg19_v1_chr1_+_52195604 AK022554	2883	+	AK056617|OSBPL9|114883|oxysterol binding protein-like 9##AK091703|OSBPL9|114883|oxysterol binding protein-like 9##AK027535|OSBPL9|114883|oxysterol binding protein-like 9##AF392445|OSBPL9|114883|oxysterol binding protein-like 9##AY178997|OSBPL9|114883|oxysterol binding protein-like 9##NM_024586|OSBPL9|114883|oxysterol binding protein-like 9##NM_148906|OSBPL9|114883|oxysterol binding protein-like 9##NM_148908|OSBPL9|114883|oxysterol binding protein-like 9##NM_148909|OSBPL9|114883|oxysterol binding protein-like 9##NM_001981|EPS15|2060|epidermal growth factor receptor pathway substrate 15##Z29064|EPS15|2060|epidermal growth factor receptor pathway substrate 15##NM_148904|OSBPL9|114883|oxysterol binding protein-like 9##NM_148905|OSBPL9|114883|oxysterol binding protein-like 9##NM_148907|OSBPL9|114883|oxysterol binding protein-like 9##AK315167|OSBPL9|114883|oxysterol binding protein-like 9##AK027707|OSBPL9|114883|oxysterol binding protein-like 9##BC025978|OSBPL9|114883|oxysterol binding protein-like 9##AK022554|OSBPL9|114883|oxysterol binding protein-like 9	0.999925	0.0	
chr17	80479783	80479849	reg1008905.p1	3.759	+	TSC_hg19_v1_chr17_+_80477607 NM_004514	-2226	+	TSC_hg19_v1_chr17_+_80416616 BC016440 CU674220 CU677625	-63174	+	TSC_hg19_v1_chr17_+_80416583 AK297875 NM_001083608 NM_012336 NM_031968 BC000438 AK000929 AK303155 AK307351 AF128406	-63253	+	TSC_hg19_v1_chr17_-_80606321 AK297477 BC000974 AM182326 AB464355 BC007838 NM_019613	126467	-	TSC_hg19_v1_chr17_-_80656575 BC035814 U05227 AB209711 BC018039 NM_006822	176718	-	TSC_hg19_v1_chr17_+_80674622 NM_024619 AK293523 AK301958 AK315373 BC007611 AK022233 AL136631 AY360465 BC014408 AB385548 CU676977 CR533461	194790	+	NM_004514|FOXK2|3607|forkhead box K2##BC016440|NARF|26502|nuclear prelamin A recognition factor##AK297875|NARF|26502|nuclear prelamin A recognition factor##NM_001083608|NARF|26502|nuclear prelamin A recognition factor##NM_012336|NARF|26502|nuclear prelamin A recognition factor##NM_031968|NARF|26502|nuclear prelamin A recognition factor##BC000438|NARF|26502|nuclear prelamin A recognition factor##AK000929|NARF|26502|nuclear prelamin A recognition factor##AK303155|NARF|26502|nuclear prelamin A recognition factor##AF128406|NARF|26502|nuclear prelamin A recognition factor##AK297477|WDR45L|56270|WDR45-like##BC000974|WDR45L|56270|WDR45-like##AM182326|WDR45L|56270|WDR45-like##BC007838|WDR45L|56270|WDR45-like##NM_019613|WDR45L|56270|WDR45-like##BC035814|RAB40B|10966|RAB40B, member RAS oncogene family##U05227|RAB40B|10966|RAB40B, member RAS oncogene family##AB209711|RAB40B|10966|RAB40B, member RAS oncogene family##BC018039|RAB40B|10966|RAB40B, member RAS oncogene family##NM_006822|RAB40B|10966|RAB40B, member RAS oncogene family##NM_024619|FN3KRP|79672|fructosamine 3 kinase related protein##AK293523|FN3KRP|79672|fructosamine 3 kinase related protein##AK301958|FN3KRP|79672|fructosamine 3 kinase related protein##AK315373|FN3KRP|79672|fructosamine 3 kinase related protein##BC007611|FN3KRP|79672|fructosamine 3 kinase related protein##AK022233|FN3KRP|79672|fructosamine 3 kinase related protein##AL136631|FN3KRP|79672|fructosamine 3 kinase related protein##AY360465|FN3KRP|79672|fructosamine 3 kinase related protein##BC014408|FN3KRP|79672|fructosamine 3 kinase related protein##CR533461|FN3KRP|79672|fructosamine 3 kinase related protein	0.997298	0.0	denovo_WM_7:3:0.378	denovo_WM_7:4:0.376	denovo_WM_7:5:0.216
chr9	128023910	128024090	reg1002693.p2	3.759	+	TSC_hg19_v1_chr9_-_128003635 NM_005347	-20286	-	TSC_hg19_v1_chr9_-_128003623 AK293604 X87949	-20377	-	AF188611 AB527282 AF216292 DQ892173 DQ895368 AJ271729 TSC_hg19_v1_chr9_-_128003594 BC020235	-20520	-	TSC_hg19_v1_chr9_+_128024074 AK294542	77	+	TSC_hg19_v1_chr9_+_128024097 AK296381	98	+	TSC_hg19_v1_chr9_+_128024104 BC110990	104	+	NM_005347|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK293604|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##X87949|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF188611|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AF216292|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ892173|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##DQ895368|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AJ271729|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##BC020235|HSPA5|3309|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)##AK294542|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##AK296381|GAPVD1|26130|GTPase activating protein and VPS9 domains 1##BC110990|GAPVD1|26130|GTPase activating protein and VPS9 domains 1	0.0	0.0	
chrX	41759757	41759854	reg1015407.p1	3.759	+	BC070180 NM_080817 AK122626 AK313702 AL832460	-176385	+	AK027780 NM_001097579 NM_005300 DQ106398 DQ106400 BC020678 DQ106399 DQ106401 DQ106402 AK075217	-211538	+	AJ278865 AF254868 NM_022567	-453106	+	AB208859 AB590064 HQ258518 AY705392 AF035582 BC117311 BC143454 BC143456 AF032119 NM_001126054 NM_001126055 NM_003688 AK313399	22520	-	BC044787 TSC_hg19_v1_chrX_+_43514289	1754418	+	TSC_hg19_v1_chrX_+_43515423 NM_000240 AK223499	1755609	+	BC070180|GPR82|27197|G protein-coupled receptor 82##NM_080817|GPR82|27197|G protein-coupled receptor 82##AK122626|GPR82|27197|G protein-coupled receptor 82##AK313702|GPR82|27197|G protein-coupled receptor 82##AL832460|GPR82|27197|G protein-coupled receptor 82##AK027780|GPR34|2857|G protein-coupled receptor 34##NM_001097579|GPR34|2857|G protein-coupled receptor 34##NM_005300|GPR34|2857|G protein-coupled receptor 34##DQ106398|GPR34|2857|G protein-coupled receptor 34##DQ106400|GPR34|2857|G protein-coupled receptor 34##BC020678|GPR34|2857|G protein-coupled receptor 34##DQ106399|GPR34|2857|G protein-coupled receptor 34##DQ106401|GPR34|2857|G protein-coupled receptor 34##DQ106402|GPR34|2857|G protein-coupled receptor 34##AK075217|GPR34|2857|G protein-coupled receptor 34##AJ278865|NYX|60506|nyctalopin##AF254868|NYX|60506|nyctalopin##NM_022567|NYX|60506|nyctalopin##AB208859|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##HQ258518|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AY705392|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF035582|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC117311|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143454|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC143456|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AF032119|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126054|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_001126055|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##NM_003688|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##AK313399|CASK|8573|calcium/calmodulin-dependent serine protein kinase (MAGUK family)##BC044787|MAOA|4128|monoamine oxidase A##NM_000240|MAOA|4128|monoamine oxidase A##AK223499|MAOA|4128|monoamine oxidase A	0.998462	0.0	denovo_WM_7:54:0.310	denovo_WM_7:55:0.310	denovo_WM_7:56:0.310
chr10	12306364	12306475	reg1001405.p2	3.758	+	TSC_hg19_v1_chr10_+_12238212 BC001600 AK289362 CR456966	-68193	+	TSC_hg19_v1_chr10_+_12238194 BC009598	-68220	+	TSC_hg19_v1_chr10_+_12238186 U27112 AK308790	-68237	+	TSC_hg19_v1_chr10_+_12391574 AK289393 NM_020397 NM_153498 AB081726	85156	+	TSC_hg19_v1_chr10_+_12391709 BC035745	85298	+	TSC_hg19_v1_chr10_+_12391810 AF286366 AB528894 CU690184 DQ892464 DQ895676	85358	+	BC001600|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289362|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##CR456966|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##BC009598|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##U27112|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK308790|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK289393|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_020397|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##NM_153498|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AB081726|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##BC035745|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##AF286366|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ892464|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID##DQ895676|CAMK1D|57118|calcium/calmodulin-dependent protein kinase ID	0.0	0.990113	CTCF.p2:-81:0.990
chr17	49342270	49342390	reg1000620.p2	3.758	+	AF151806 TSC_hg19_v1_chr17_+_49337913 AK314399 BC025276 BC001535	-4405	+	TSC_hg19_v1_chr17_+_49337906 NM_016001	-4431	+	TSC_hg19_v1_chr17_+_49337888 AK026355	-4444	+	TSC_hg19_v1_chr17_-_50235676 AK294652 AK313001	893358	-	TSC_hg19_v1_chr17_-_50236075 BC047456 BC068462	893710	-	CR936674 TSC_hg19_v1_chr17_-_50236127 NM_020178	893808	-	AF151806|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK314399|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC025276|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##BC001535|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##NM_016001|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK026355|UTP18|51096|UTP18 small subunit (SSU) processome component homolog (yeast)##AK294652|CA10|56934|carbonic anhydrase X##AK313001|CA10|56934|carbonic anhydrase X##BC047456|CA10|56934|carbonic anhydrase X##BC068462|CA10|56934|carbonic anhydrase X##NM_020178|CA10|56934|carbonic anhydrase X	0.0	0.0	
chr17	5342552	5342672	reg1017805.p1	3.758	+	BC000435 TSC_hg19_v1_chr17_-_5342437 AK291516 L04636 NM_001212 X75913	-149	-	M69039 BT019898 BT019899 CU680662 DQ891331 DQ893366 DQ894514 DQ896683 AB590234 TSC_hg19_v1_chr17_-_5342406 BC013731 AJ297362	-213	-	TSC_hg19_v1_chr17_+_5323504 BC013831 AK096001 AK300409 BC046349 BC004451 AK295394 BC062623 BC051849 AY680654 AY680655 AY680656 AY680657 AY680658 AY680659 AY680660 CU690862	-19112	+	BC030017 TSC_hg19_v1_chr17_-_5372147 AK295074	29492	-	BC141954 AK025625 BC141953 TSC_hg19_v1_chr17_-_5372206	29580	-	BC050409 TSC_hg19_v1_chr17_-_5372303 AK314580 AK295760 NM_001199699 NM_020162	29695	-	BC000435|C1QBP|708|complement component 1, q subcomponent binding protein##AK291516|C1QBP|708|complement component 1, q subcomponent binding protein##L04636|C1QBP|708|complement component 1, q subcomponent binding protein##NM_001212|C1QBP|708|complement component 1, q subcomponent binding protein##X75913|C1QBP|708|complement component 1, q subcomponent binding protein##BT019898|C1QBP|708|complement component 1, q subcomponent binding protein##BT019899|C1QBP|708|complement component 1, q subcomponent binding protein##DQ891331|C1QBP|708|complement component 1, q subcomponent binding protein##DQ893366|C1QBP|708|complement component 1, q subcomponent binding protein##DQ894514|C1QBP|708|complement component 1, q subcomponent binding protein##DQ896683|C1QBP|708|complement component 1, q subcomponent binding protein##BC013731|C1QBP|708|complement component 1, q subcomponent binding protein##AJ297362|C1QBP|708|complement component 1, q subcomponent binding protein##BC013831|RPAIN|84268|RPA interacting protein##AK096001|RPAIN|84268|RPA interacting protein##AK300409|RPAIN|84268|RPA interacting protein##BC046349|RPAIN|84268|RPA interacting protein##BC004451|RPAIN|84268|RPA interacting protein##AK295394|RPAIN|84268|RPA interacting protein##BC062623|RPAIN|84268|RPA interacting protein##BC051849|RPAIN|84268|RPA interacting protein##AY680654|RPAIN|84268|RPA interacting protein##AY680655|RPAIN|84268|RPA interacting protein##AY680656|RPAIN|84268|RPA interacting protein##AY680657|RPAIN|84268|RPA interacting protein##AY680658|RPAIN|84268|RPA interacting protein##AY680659|RPAIN|84268|RPA interacting protein##AY680660|RPAIN|84268|RPA interacting protein##BC030017|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK295074|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK025625|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##BC050409|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK314580|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##AK295760|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##NM_001199699|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33##NM_020162|DHX33|56919|DEAH (Asp-Glu-Ala-His) box polypeptide 33	0.0	1.845386	CTCF.p2:38:0.860	CTCF.p2:-61:0.985
chr19	17245052	17245125	reg1016889.p1	3.758	+	TSC_hg19_v1_chr19_+_17186586 NM_001130065 NM_004145 AB209997 AB290184	-58495	+	BC004398 AY211919 TSC_hg19_v1_chr19_-_17186246 NM_001011699 NM_033417 AK295994	-58767	-	AB033109 AY101765 TSC_hg19_v1_chr19_-_17137621 BC067854 NM_015692	-107548	-	NM_018467 TSC_hg19_v1_chr19_+_17326162 AB097050 AF220052	81084	+	TSC_hg19_v1_chr19_+_17326198 AK074683 BC006005 BC008455 AB590103 AM393803 CU675221 EU446821	81117	+	BC029361 TSC_hg19_v1_chr19_+_17337034 BC038945 AK026362 NM_024578 CU688632	91946	+	NM_001130065|MYO9B|4650|myosin IXB##NM_004145|MYO9B|4650|myosin IXB##AB209997|MYO9B|4650|myosin IXB##AB290184|MYO9B|4650|myosin IXB##BC004398|HAUS8|93323|HAUS augmin-like complex, subunit 8##AY211919|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_001011699|HAUS8|93323|HAUS augmin-like complex, subunit 8##NM_033417|HAUS8|93323|HAUS augmin-like complex, subunit 8##AK295994|HAUS8|93323|HAUS augmin-like complex, subunit 8##AB033109|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##AY101765|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##BC067854|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_015692|CPAMD8|27151|C3 and PZP-like, alpha-2-macroglobulin domain containing 8##NM_018467|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AB097050|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AF220052|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AK074683|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC006005|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC008455|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##AM393803|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##EU446821|USE1|55850|unconventional SNARE in the ER 1 homolog (S. cerevisiae)##BC029361|OCEL1|79629|occludin/ELL domain containing 1##BC038945|OCEL1|79629|occludin/ELL domain containing 1##AK026362|OCEL1|79629|occludin/ELL domain containing 1##NM_024578|OCEL1|79629|occludin/ELL domain containing 1	1.086771	0.0	denovo_WM_7:83:0.422	denovo_WM_7:84:0.324	denovo_WM_7:107:0.665
chr3	12667663	12667729	reg1016142.p2	3.758	+	TSC_hg19_v1_chr3_+_12598585 AK091318 BC015715 AK298463 NM_014160 AF302084 DQ891095 DQ894277 CU677403	-69116	+	NM_001195279	-80734	-	AK291183 TSC_hg19_v1_chr3_+_12526242	-141460	+	TSC_hg19_v1_chr3_-_12705590 X03484 AK312248	37771	-	TSC_hg19_v1_chr3_-_12705617 BC018119 AK226028 AK303561	37919	-	TSC_hg19_v1_chr3_-_12705626 NM_002880	37978	-	AK091318|MKRN2|23609|makorin ring finger protein 2##BC015715|MKRN2|23609|makorin ring finger protein 2##AK298463|MKRN2|23609|makorin ring finger protein 2##NM_014160|MKRN2|23609|makorin ring finger protein 2##AF302084|MKRN2|23609|makorin ring finger protein 2##DQ891095|MKRN2|23609|makorin ring finger protein 2##DQ894277|MKRN2|23609|makorin ring finger protein 2##NM_001195279|LOC100129480|100129480|uncharacterized LOC100129480##AK291183|TSEN2|80746|tRNA splicing endonuclease 2 homolog (S. cerevisiae)##X03484|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK312248|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##BC018119|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK226028|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##AK303561|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1##NM_002880|RAF1|5894|v-raf-1 murine leukemia viral oncogene homolog 1	0.045776	0.0	
chr3	171780660	171780799	reg1001829.p4	3.758	+	TSC_hg19_v1_chr3_+_171758320 AK314478 NM_001135095 BX648340 AB098597	-22392	+	TSC_hg19_v1_chr3_+_171757442 AY358367	-23271	+	TSC_hg19_v1_chr3_+_171757437 AK127826	-23295	+	AY429112 BC069068 BC069374 U60179 U60181 AB587602 HQ258211 BC113547 NM_004122 NM_198407	385494	-	AY312579 BT019564 CR456895 DQ848564 EU183231 AB590324 CU689506 DQ890873 DQ894029 BC009795 TSC_hg19_v1_chr3_-_172241221 BC032722 BC020220 AK309200 U37518 U57059 AK296085 AK312742 NM_001190943 NM_001190942 NM_003810	460449	-	CU688560 TSC_hg19_v1_chr3_-_172428856 AB037784 AK294811 AK295641 BC047588 AK299422 AK304253 AK316431 BC028734 NM_001146276 NM_001146277 NM_001146278 NM_020792	648161	-	AK314478|FNDC3B|64778|fibronectin type III domain containing 3B##NM_001135095|FNDC3B|64778|fibronectin type III domain containing 3B##BX648340|FNDC3B|64778|fibronectin type III domain containing 3B##AB098597|FNDC3B|64778|fibronectin type III domain containing 3B##AY358367|FNDC3B|64778|fibronectin type III domain containing 3B##AK127826|FNDC3B|64778|fibronectin type III domain containing 3B##AY429112|GHSR|2693|growth hormone secretagogue receptor##BC069068|GHSR|2693|growth hormone secretagogue receptor##BC069374|GHSR|2693|growth hormone secretagogue receptor##U60179|GHSR|2693|growth hormone secretagogue receptor##U60181|GHSR|2693|growth hormone secretagogue receptor##HQ258211|GHSR|2693|growth hormone secretagogue receptor##BC113547|GHSR|2693|growth hormone secretagogue receptor##NM_004122|GHSR|2693|growth hormone secretagogue receptor##NM_198407|GHSR|2693|growth hormone secretagogue receptor##AY312579|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BT019564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##CR456895|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ848564|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##EU183231|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ890873|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##DQ894029|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC009795|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC032722|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##BC020220|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U37518|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##U57059|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK296085|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AK312742|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190943|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_001190942|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##NM_003810|TNFSF10|8743|tumor necrosis factor (ligand) superfamily, member 10##AB037784|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK294811|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK295641|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC047588|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK299422|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK304253|NCEH1|57552|neutral cholesterol ester hydrolase 1##AK316431|NCEH1|57552|neutral cholesterol ester hydrolase 1##BC028734|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146276|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146277|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_001146278|NCEH1|57552|neutral cholesterol ester hydrolase 1##NM_020792|NCEH1|57552|neutral cholesterol ester hydrolase 1	0.010245	0.0	
chr4	175236323	175236432	reg1009569.p1	3.758	+	BC014903 NM_012180 AK123740	-30970	-	TSC_hg19_v1_chr4_+_175205073 NM_001145314 BC038667 AB051499 AK094961 AK292484	-31264	+	NM_001040157 TSC_hg19_v1_chr4_+_175204877	-31517	+	U63296 X82460 BC007691 BC018986 J05594 L76465 AK058013 AK300940 AK314624 AK300125 TSC_hg19_v1_chr4_-_175443639	207243	-	AK300524 NM_000860 NM_001145816	207414	-	U93917 BC036086 NM_001042543 NM_006529	514043	-	BC014903|FBXO8|26269|F-box protein 8##NM_012180|FBXO8|26269|F-box protein 8##AK123740|FBXO8|26269|F-box protein 8##NM_001145314|CEP44|80817|centrosomal protein 44kDa##BC038667|CEP44|80817|centrosomal protein 44kDa##AB051499|CEP44|80817|centrosomal protein 44kDa##AK094961|CEP44|80817|centrosomal protein 44kDa##AK292484|CEP44|80817|centrosomal protein 44kDa##NM_001040157|CEP44|80817|centrosomal protein 44kDa##U63296|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##X82460|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC007691|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##BC018986|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##J05594|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##L76465|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK058013|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300940|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK314624|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300125|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##AK300524|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_000860|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##NM_001145816|HPGD|3248|hydroxyprostaglandin dehydrogenase 15-(NAD)##U93917|GLRA3|8001|glycine receptor, alpha 3##BC036086|GLRA3|8001|glycine receptor, alpha 3##NM_001042543|GLRA3|8001|glycine receptor, alpha 3##NM_006529|GLRA3|8001|glycine receptor, alpha 3	0.997354	0.0	denovo_WM_7:14:0.976
chr10	60866790	60866905	reg1018418.p1	3.757	+	TSC_hg19_v1_chr10_+_60272869 NM_001080512 AY726586	-593935	+	BC029815 TSC_hg19_v1_chr10_+_60145169 AK312558 M62810 NM_003201 BC018628 BC104482 BC126366 EU279428 HQ258758 AB451241 AB451366 AB464302 BT019658 BT019659 CR407653	-721642	+	TSC_hg19_v1_chr10_+_60094765 NM_001204880 NM_003338 AK291901 BC005980 BC015997 AF257220 AJ272367 X78140 AB590170 DQ893111 DQ896385 BT007041	-772011	+	TSC_hg19_v1_chr10_-_60936189 AK055418	69359	-	AL834339 NM_032439 TSC_hg19_v1_chr10_+_60936408 CR749429	69541	+	BC011268 AK054956 TSC_hg19_v1_chr10_+_60936573 AB384640 AM392743	69713	+	NM_001080512|BICC1|80114|bicaudal C homolog 1 (Drosophila)##AY726586|BICC1|80114|bicaudal C homolog 1 (Drosophila)##BC029815|TFAM|7019|transcription factor A, mitochondrial##AK312558|TFAM|7019|transcription factor A, mitochondrial##M62810|TFAM|7019|transcription factor A, mitochondrial##NM_003201|TFAM|7019|transcription factor A, mitochondrial##BC018628|TFAM|7019|transcription factor A, mitochondrial##BC104482|TFAM|7019|transcription factor A, mitochondrial##BC126366|TFAM|7019|transcription factor A, mitochondrial##EU279428|TFAM|7019|transcription factor A, mitochondrial##HQ258758|TFAM|7019|transcription factor A, mitochondrial##AB451241|TFAM|7019|transcription factor A, mitochondrial##AB451366|TFAM|7019|transcription factor A, mitochondrial##BT019658|TFAM|7019|transcription factor A, mitochondrial##BT019659|TFAM|7019|transcription factor A, mitochondrial##CR407653|TFAM|7019|transcription factor A, mitochondrial##NM_001204880|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##NM_003338|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AK291901|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC005980|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BC015997|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AF257220|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AJ272367|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##X78140|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ893111|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##DQ896385|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##BT007041|UBE2D1|7321|ubiquitin-conjugating enzyme E2D 1##AL834339|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##NM_032439|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##CR749429|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##BC011268|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AK054956|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like##AM392743|PHYHIPL|84457|phytanoyl-CoA 2-hydroxylase interacting protein-like	1.745407	0.0	denovo_WM_7:1:0.943	denovo_WM_7:-54:0.229	denovo_WM_7:-56:0.506
chr16	10927374	10927458	reg1017760.p1	3.757	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-14868	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-89712	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-138651	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	43696	+	BC071683 TSC_hg19_v1_chr16_-_11036171	108750	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	108819	-	BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)	0.985899	0.0	denovo_WM_7:45:0.974
chr19	16293266	16293446	reg1014927.p1	3.757	+	AB050868 BC069320 BC069428 BC069524 NM_054113 HQ258101 BC112200 BC113591	-9046	-	TSC_hg19_v1_chr19_+_16254533 AK027792 AK131222 AK300027 AK298682 AK307563 BC016826	-38854	+	TSC_hg19_v1_chr19_-_16250705 AK095221	-42652	-	TSC_hg19_v1_chr19_+_16296220 AK312058 BC000639 AL050157 NM_014077 BC017286 AF151902 AM393549 AM393669	2876	+	AK293188 NM_001130524 NM_032493 TSC_hg19_v1_chr19_+_16308721 AK297824 BC017469 AB209808 AF290613 AB590055 DQ059565	15394	+	TSC_hg19_v1_chr19_+_16435636 AK225820 BC071983 BC035342 AF205849 NM_016270	142285	+	AB050868|CIB3|117286|calcium and integrin binding family member 3##BC069320|CIB3|117286|calcium and integrin binding family member 3##BC069428|CIB3|117286|calcium and integrin binding family member 3##BC069524|CIB3|117286|calcium and integrin binding family member 3##NM_054113|CIB3|117286|calcium and integrin binding family member 3##HQ258101|CIB3|117286|calcium and integrin binding family member 3##BC112200|CIB3|117286|calcium and integrin binding family member 3##BC113591|CIB3|117286|calcium and integrin binding family member 3##AK027792|HSH2D|84941|hematopoietic SH2 domain containing##AK131222|HSH2D|84941|hematopoietic SH2 domain containing##AK300027|HSH2D|84941|hematopoietic SH2 domain containing##AK298682|HSH2D|84941|hematopoietic SH2 domain containing##AK307563|HSH2D|84941|hematopoietic SH2 domain containing##BC016826|HSH2D|84941|hematopoietic SH2 domain containing##AK312058|FAM32A|26017|family with sequence similarity 32, member A##BC000639|FAM32A|26017|family with sequence similarity 32, member A##AL050157|FAM32A|26017|family with sequence similarity 32, member A##NM_014077|FAM32A|26017|family with sequence similarity 32, member A##BC017286|FAM32A|26017|family with sequence similarity 32, member A##AF151902|FAM32A|26017|family with sequence similarity 32, member A##AM393549|FAM32A|26017|family with sequence similarity 32, member A##AM393669|FAM32A|26017|family with sequence similarity 32, member A##AK293188|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_001130524|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##NM_032493|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK297824|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##BC017469|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AB209808|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AF290613|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##DQ059565|AP1M1|8907|adaptor-related protein complex 1, mu 1 subunit##AK225820|KLF2|10365|Kruppel-like factor 2 (lung)##BC071983|KLF2|10365|Kruppel-like factor 2 (lung)##BC035342|KLF2|10365|Kruppel-like factor 2 (lung)##AF205849|KLF2|10365|Kruppel-like factor 2 (lung)##NM_016270|KLF2|10365|Kruppel-like factor 2 (lung)	1.942913	0.0	denovo_WM_7:-46:0.207	denovo_WM_7:-68:0.663
chr2	10222426	10222595	reg1006975.p1	3.757	+	TSC_hg19_v1_chr2_-_10220367 AB590068 AF544983 NM_001037160	-2081	-	AK091299 TSC_hg19_v1_chr2_-_10220297	-2274	-	AB463821 TSC_hg19_v1_chr2_+_10186406	-36165	+	NM_001165931 S40301 X59618 TSC_hg19_v1_chr2_+_10262805	40249	+	TSC_hg19_v1_chr2_+_10262865 NM_001034 AK092671 AK123010 AK313719 BC030154 BC001886 DQ891863 DQ895052 AB529158	40379	+	BC093999 BC094001 NM_182626	59469	+	AF544983|CYS1|192668|cystin 1##NM_001037160|CYS1|192668|cystin 1##AK091299|CYS1|192668|cystin 1##NM_001165931|RRM2|6241|ribonucleotide reductase M2##S40301|RRM2|6241|ribonucleotide reductase M2##X59618|RRM2|6241|ribonucleotide reductase M2##NM_001034|RRM2|6241|ribonucleotide reductase M2##AK092671|RRM2|6241|ribonucleotide reductase M2##AK123010|RRM2|6241|ribonucleotide reductase M2##AK313719|RRM2|6241|ribonucleotide reductase M2##BC030154|RRM2|6241|ribonucleotide reductase M2##BC001886|RRM2|6241|ribonucleotide reductase M2##DQ891863|RRM2|6241|ribonucleotide reductase M2##DQ895052|RRM2|6241|ribonucleotide reductase M2##BC093999|C2orf48|348738|chromosome 2 open reading frame 48##BC094001|C2orf48|348738|chromosome 2 open reading frame 48##NM_182626|C2orf48|348738|chromosome 2 open reading frame 48	0.993067	0.0	denovo_WM_7:91:0.946
chr6	134274219	134274317	reg1013649.p2	3.757	+	NM_001253676 AK292320 TSC_hg19_v1_chr6_+_134273421	-904	+	TSC_hg19_v1_chr6_+_134210277 AF035718 AF047419 BC025697	-63998	+	TSC_hg19_v1_chr6_+_134210250 NM_198392 NM_003206	-64014	+	TSC_hg19_v1_chr6_+_134274364 NM_004865 AK313645 BC000381 AF136570 AF130312 AB020881 BC017559	77	+	CU687054 AK226098 BC070149 AY046419 AL833602 AK122628 BX648889 NM_145176	99435	-	CU674630 Y10032 AF153609 BC001263 FM205710 TSC_hg19_v1_chr6_-_134496003 AK098509 AK295422 BX649005	221706	-	NM_001253676|TBPL1|9519|TBP-like 1##AK292320|TBPL1|9519|TBP-like 1##AF035718|TCF21|6943|transcription factor 21##AF047419|TCF21|6943|transcription factor 21##BC025697|TCF21|6943|transcription factor 21##NM_198392|TCF21|6943|transcription factor 21##NM_003206|TCF21|6943|transcription factor 21##NM_004865|TBPL1|9519|TBP-like 1##AK313645|TBPL1|9519|TBP-like 1##BC000381|TBPL1|9519|TBP-like 1##AF136570|TBPL1|9519|TBP-like 1##AF130312|TBPL1|9519|TBP-like 1##AB020881|TBPL1|9519|TBP-like 1##BC017559|TBPL1|9519|TBP-like 1##AK226098|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##BC070149|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##AY046419|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##AL833602|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##AK122628|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##BX648889|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##NM_145176|SLC2A12|154091|solute carrier family 2 (facilitated glucose transporter), member 12##Y10032|SGK1|6446|serum/glucocorticoid regulated kinase 1##AF153609|SGK1|6446|serum/glucocorticoid regulated kinase 1##BC001263|SGK1|6446|serum/glucocorticoid regulated kinase 1##FM205710|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK098509|SGK1|6446|serum/glucocorticoid regulated kinase 1##AK295422|SGK1|6446|serum/glucocorticoid regulated kinase 1##BX649005|SGK1|6446|serum/glucocorticoid regulated kinase 1	0.0	0.0	
chr6	37071267	37071418	reg1014164.p1	3.757	+	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	-97841	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-117072	-	AK022783 TSC_hg19_v1_chr6_-_36953950 AF176006 AF192559 BC125055 BC153873 NM_014341 BC110914	-117365	-	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	66780	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	154044	-	TSC_hg19_v1_chr6_+_37225547 AY313781 BC047658 NM_017772 AK096340 BC109026 BC109027 BX648317 AK292893 AB449909	154257	+	BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK315067|MTCH1|23787|mitochondrial carrier 1##AK022783|MTCH1|23787|mitochondrial carrier 1##AF176006|MTCH1|23787|mitochondrial carrier 1##AF192559|MTCH1|23787|mitochondrial carrier 1##BC125055|MTCH1|23787|mitochondrial carrier 1##BC153873|MTCH1|23787|mitochondrial carrier 1##NM_014341|MTCH1|23787|mitochondrial carrier 1##BC110914|MTCH1|23787|mitochondrial carrier 1##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217##AY313781|TBC1D22B|55633|TBC1 domain family, member 22B##BC047658|TBC1D22B|55633|TBC1 domain family, member 22B##NM_017772|TBC1D22B|55633|TBC1 domain family, member 22B##AK096340|TBC1D22B|55633|TBC1 domain family, member 22B##BC109026|TBC1D22B|55633|TBC1 domain family, member 22B##BC109027|TBC1D22B|55633|TBC1 domain family, member 22B##BX648317|TBC1D22B|55633|TBC1 domain family, member 22B##AK292893|TBC1D22B|55633|TBC1 domain family, member 22B##AB449909|TBC1D22B|55633|TBC1 domain family, member 22B	0.992796	0.0	denovo_WM_7:31:0.896
chr9	859451	859581	reg1018237.p1	3.757	+	AF130728 AY442914 AY442915 NM_021951 AK313594 AJ276801 AL162131 BC040847 EU446468 AB463577 CU691924	-17753	+	TSC_hg19_v1_chr9_+_706828 BC038116 NM_153186	-152686	+	AB205112 TSC_hg19_v1_chr9_+_686677	-172850	+	NM_021240 BC113584 BC117245	117449	+	AF193873 TSC_hg19_v1_chr9_+_977425	117889	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	190828	+	AF130728|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442914|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AY442915|DMRT1|1761|doublesex and mab-3 related transcription factor 1##NM_021951|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AK313594|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AJ276801|DMRT1|1761|doublesex and mab-3 related transcription factor 1##AL162131|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC040847|DMRT1|1761|doublesex and mab-3 related transcription factor 1##EU446468|DMRT1|1761|doublesex and mab-3 related transcription factor 1##BC038116|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_153186|KANK1|23189|KN motif and ankyrin repeat domains 1##NM_021240|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC113584|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BC117245|DMRT3|58524|doublesex and mab-3 related transcription factor 3##AF193873|DMRT3|58524|doublesex and mab-3 related transcription factor 3##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2	0.0	0.0	
chr12	53765556	53765648	reg1011168.p2	3.756	+	AY150674 NM_001173467	-35599	-	AB527932 EU446563 BC101549 BC113613 AY150673 AF477981 NM_152860 AF466179	-36119	-	TSC_hg19_v1_chr12_-_53715374 AK293342 BC000659 BC018836 AY237818 NM_001173466 NM_015665	-50225	-	TSC_hg19_v1_chr12_+_53773935 BC062539 NM_001251825 NM_138473 AF255682 AJ272134	8388	+	BC043224 NM_003109	8822	+	NM_001164690 NM_001164691 NM_020547 AK313593 AF172932 BC126316 BC136356 AY714878 HQ258327	52076	+	AY150674|SP7|121340|Sp7 transcription factor##NM_001173467|SP7|121340|Sp7 transcription factor##EU446563|SP7|121340|Sp7 transcription factor##BC101549|SP7|121340|Sp7 transcription factor##BC113613|SP7|121340|Sp7 transcription factor##AY150673|SP7|121340|Sp7 transcription factor##AF477981|SP7|121340|Sp7 transcription factor##NM_152860|SP7|121340|Sp7 transcription factor##AF466179|SP7|121340|Sp7 transcription factor##AK293342|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC000659|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC018836|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##AY237818|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_001173466|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##NM_015665|AAAS|8086|achalasia, adrenocortical insufficiency, alacrimia##BC062539|SP1|6667|Sp1 transcription factor##NM_001251825|SP1|6667|Sp1 transcription factor##NM_138473|SP1|6667|Sp1 transcription factor##AF255682|SP1|6667|Sp1 transcription factor##AJ272134|SP1|6667|Sp1 transcription factor##BC043224|SP1|6667|Sp1 transcription factor##NM_003109|SP1|6667|Sp1 transcription factor##NM_001164690|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_001164691|AMHR2|269|anti-Mullerian hormone receptor, type II##NM_020547|AMHR2|269|anti-Mullerian hormone receptor, type II##AK313593|AMHR2|269|anti-Mullerian hormone receptor, type II##AF172932|AMHR2|269|anti-Mullerian hormone receptor, type II##BC126316|AMHR2|269|anti-Mullerian hormone receptor, type II##BC136356|AMHR2|269|anti-Mullerian hormone receptor, type II##AY714878|AMHR2|269|anti-Mullerian hormone receptor, type II##HQ258327|AMHR2|269|anti-Mullerian hormone receptor, type II	0.99951	0.014088	denovo_WM_7:2:0.964
chr1	26188491	26188644	reg1013364.p1	3.756	+	AK024326 NM_024037 AK223419 BC000209 GQ844687	-2693	-	BC017175 NM_001099626 AY007100	-41212	+	TSC_hg19_v1_chr1_-_26147289 AK054768	-41260	-	BC034015 NM_178422	9176	-	NM_203401	44076	-	BC082228 AB209282 X53305 BX647885 Z11566 AK303692 AK054594 AK311801 D28428 TSC_hg19_v1_chr1_-_26232911 J04991 BC014353 NM_001145454 NM_005563	44374	-	AK024326|C1orf135|79000|chromosome 1 open reading frame 135##NM_024037|C1orf135|79000|chromosome 1 open reading frame 135##AK223419|C1orf135|79000|chromosome 1 open reading frame 135##BC000209|C1orf135|79000|chromosome 1 open reading frame 135##GQ844687|C1orf135|79000|chromosome 1 open reading frame 135##BC017175|FAM54B|56181|family with sequence similarity 54, member B##NM_001099626|FAM54B|56181|family with sequence similarity 54, member B##AY007100|FAM54B|56181|family with sequence similarity 54, member B##AK054768|LOC646471|646471|uncharacterized LOC646471##BC034015|PAQR7|164091|progestin and adipoQ receptor family member VII##NM_178422|PAQR7|164091|progestin and adipoQ receptor family member VII##NM_203401|STMN1|3925|stathmin 1##BC082228|STMN1|3925|stathmin 1##AB209282|STMN1|3925|stathmin 1##X53305|STMN1|3925|stathmin 1##BX647885|STMN1|3925|stathmin 1##Z11566|STMN1|3925|stathmin 1##AK303692|STMN1|3925|stathmin 1##AK054594|STMN1|3925|stathmin 1##AK311801|STMN1|3925|stathmin 1##D28428|STMN1|3925|stathmin 1##J04991|STMN1|3925|stathmin 1##BC014353|STMN1|3925|stathmin 1##NM_001145454|STMN1|3925|stathmin 1##NM_005563|STMN1|3925|stathmin 1	1.995751	0.0	denovo_WM_7:-40:0.561	denovo_WM_7:-41:0.281	denovo_WM_7:-55:0.332	denovo_WM_7:-56:0.613
chr18	43033704	43033787	reg1013008.p1	3.756	+	NM_001242692 AK292422	-240793	+	TSC_hg19_v1_chr18_+_42260852 AB007897 BC146776 NM_015559	-772877	+	TSC_hg19_v1_chr18_+_42260124 BC062338 NM_001130110	-773631	+	AF349446 NM_007163	161020	+	NM_001128588 NM_001146036 NM_015865 TSC_hg19_v1_chr18_+_43304115	270359	+	AK127452 TSC_hg19_v1_chr18_+_43304145 AK289608 AK294129 AK295268 U35735 BC040128 BC050539 AF328892	270412	+	NM_001242692|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AK292422|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##AB007897|SETBP1|26040|SET binding protein 1##BC146776|SETBP1|26040|SET binding protein 1##NM_015559|SETBP1|26040|SET binding protein 1##BC062338|SETBP1|26040|SET binding protein 1##NM_001130110|SETBP1|26040|SET binding protein 1##AF349446|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_007163|SLC14A2|8170|solute carrier family 14 (urea transporter), member 2##NM_001128588|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_001146036|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##NM_015865|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK127452|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK289608|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK294129|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AK295268|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##U35735|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC040128|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##BC050539|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##AF328892|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	2.805527	0.0	denovo_WM_7:56:0.244	denovo_WM_7:57:0.560	denovo_WM_7:75:0.919	denovo_WM_7:90:0.945
chr6	16481446	16481626	reg1005584.p1	3.756	+	TSC_hg19_v1_chr6_+_16238819 BC008281 NM_006877 M24470 EU831974 EU832067 CU678899	-242685	+	TSC_hg19_v1_chr6_+_16143281 AK026739	-338226	+	TSC_hg19_v1_chr6_+_16129328 BC002860 AF258586 AF187016 AF006003 AF212221 EU176184 CU678250 BT007055	-352099	+	BC039236 TSC_hg19_v1_chr6_-_16761692 BC014548 X79204 AK311274 AK311649 BC063120 BC047894 NM_000332 NM_001128164 BC011026	280161	-	NM_001190766	620952	+	AK095016 AK293052 AK315856 NM_001143942 AB528899 AY547318 AK129865	800318	+	BC008281|GMPR|2766|guanosine monophosphate reductase##NM_006877|GMPR|2766|guanosine monophosphate reductase##M24470|GMPR|2766|guanosine monophosphate reductase##EU831974|GMPR|2766|guanosine monophosphate reductase##EU832067|GMPR|2766|guanosine monophosphate reductase##AK026739|MYLIP|29116|myosin regulatory light chain interacting protein##BC002860|MYLIP|29116|myosin regulatory light chain interacting protein##AF258586|MYLIP|29116|myosin regulatory light chain interacting protein##AF187016|MYLIP|29116|myosin regulatory light chain interacting protein##AF006003|MYLIP|29116|myosin regulatory light chain interacting protein##AF212221|MYLIP|29116|myosin regulatory light chain interacting protein##EU176184|MYLIP|29116|myosin regulatory light chain interacting protein##BT007055|MYLIP|29116|myosin regulatory light chain interacting protein##BC039236|ATXN1|6310|ataxin 1##BC014548|ATXN1|6310|ataxin 1##X79204|ATXN1|6310|ataxin 1##AK311274|ATXN1|6310|ataxin 1##BC063120|ATXN1|6310|ataxin 1##BC047894|ATXN1|6310|ataxin 1##NM_000332|ATXN1|6310|ataxin 1##NM_001128164|ATXN1|6310|ataxin 1##BC011026|ATXN1|6310|ataxin 1##NM_001190766|FLJ23152|401236|uncharacterized LOC401236##AK095016|RBM24|221662|RNA binding motif protein 24##AK293052|RBM24|221662|RNA binding motif protein 24##AK315856|RBM24|221662|RNA binding motif protein 24##NM_001143942|RBM24|221662|RNA binding motif protein 24##AY547318|RBM24|221662|RNA binding motif protein 24##AK129865|RBM24|221662|RNA binding motif protein 24	0.0	0.0	
chr13	103684144	103684324	reg1002444.p2	3.755	+	TSC_hg19_v1_chr13_+_103498385 BX647399 AK303558 X69978 AK299758 L20046 D16305 CU689168 DQ891818 DQ895006	-185748	+	AK294708 TSC_hg19_v1_chr13_+_103498254	-185980	+	TSC_hg19_v1_chr13_+_103498240 NM_000123 BC031522 AF462447	-186025	+	NM_000452 U10417	34961	-	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	2434070	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	2434357	+	BX647399|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK303558|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##X69978|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK299758|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##L20046|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##D16305|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ891818|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ895006|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK294708|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##NM_000123|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##BC031522|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AF462447|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator	0.0	0.0	
chr15	40843054	40843137	reg1007191.p2	3.755	+	NM_130468 AB066595 BC049214 TSC_hg19_v1_chr15_+_40763222 BC053633 AF282905 AK074739 CU690606 AF401222 AY358446 BC023653	-79753	+	TSC_hg19_v1_chr15_+_40733353 BC022782 NM_014952	-109732	+	TSC_hg19_v1_chr15_+_40698024 AK315296 BT007145 DQ892577 DQ895793	-145047	+	AK092214 AX747411 AL832032 AK098781 TSC_hg19_v1_chr15_-_40857211	14107	-	TSC_hg19_v1_chr15_-_40857235 AK312842 AK293079 NM_001080791 NM_001080792 NM_052849	14145	-	TSC_hg19_v1_chr15_+_40861497 AK301383	18403	+	NM_130468|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AB066595|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC049214|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC053633|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF282905|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AK074739|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AF401222|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##AY358446|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC023653|CHST14|113189|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14##BC022782|BAHD1|22893|bromo adjacent homology domain containing 1##NM_014952|BAHD1|22893|bromo adjacent homology domain containing 1##AK315296|IVD|3712|isovaleryl-CoA dehydrogenase##BT007145|IVD|3712|isovaleryl-CoA dehydrogenase##DQ892577|IVD|3712|isovaleryl-CoA dehydrogenase##DQ895793|IVD|3712|isovaleryl-CoA dehydrogenase##AK092214|C15orf57|90416|chromosome 15 open reading frame 57##AL832032|C15orf57|90416|chromosome 15 open reading frame 57##AK098781|C15orf57|90416|chromosome 15 open reading frame 57##AK312842|C15orf57|90416|chromosome 15 open reading frame 57##AK293079|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080791|C15orf57|90416|chromosome 15 open reading frame 57##NM_001080792|C15orf57|90416|chromosome 15 open reading frame 57##NM_052849|C15orf57|90416|chromosome 15 open reading frame 57##AK301383|RPUSD2|27079|RNA pseudouridylate synthase domain containing 2	0.232115	0.0	
chr17	40495009	40495189	reg1008494.p1	3.755	+	TSC_hg19_v1_chr17_+_40440515 AK301457 BC027036 AB208972 L41142	-54574	+	NM_003152 U43185	-55535	+	TSC_hg19_v1_chr17_-_40428410 U47686 AB208920 BC020868 BC065227 NM_012448	-66667	-	TSC_hg19_v1_chr17_-_40540461 BC014482 NM_213662 BC000627 BC029783 AK297994	45315	-	TSC_hg19_v1_chr17_-_40540493 L29277 NM_003150 NM_139276 AK301200 AK316139	45433	-	TSC_hg19_v1_chr17_-_40540580 AK291933	45493	-	AK301457|STAT5A|6776|signal transducer and activator of transcription 5A##BC027036|STAT5A|6776|signal transducer and activator of transcription 5A##AB208972|STAT5A|6776|signal transducer and activator of transcription 5A##L41142|STAT5A|6776|signal transducer and activator of transcription 5A##NM_003152|STAT5A|6776|signal transducer and activator of transcription 5A##U43185|STAT5A|6776|signal transducer and activator of transcription 5A##U47686|STAT5B|6777|signal transducer and activator of transcription 5B##AB208920|STAT5B|6777|signal transducer and activator of transcription 5B##BC020868|STAT5B|6777|signal transducer and activator of transcription 5B##BC065227|STAT5B|6777|signal transducer and activator of transcription 5B##NM_012448|STAT5B|6777|signal transducer and activator of transcription 5B##BC014482|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_213662|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC000627|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##BC029783|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK297994|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##L29277|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_003150|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##NM_139276|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK301200|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK316139|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)##AK291933|STAT3|6774|signal transducer and activator of transcription 3 (acute-phase response factor)	1.982266	0.0	denovo_WM_7:96:0.247	denovo_WM_7:97:0.247	denovo_WM_7:98:0.247	denovo_WM_7:99:0.247
chr19	49087656	49087784	reg1011662.p2	3.755	+	NM_004605	-8728	+	TSC_hg19_v1_chr19_+_49055432 NM_177973 U92315 BC034694 CU689942	-32256	+	AB067470 NM_001080434	-71289	-	AF353721 NM_133498 AY358387 BC047334	22289	+	BC111970 BC111972 NM_017708 AK000207	29035	-	TSC_hg19_v1_chr19_-_49122434 L11566 BC009708 BC051837 AK091257 AX746879 AK026558 AK293386 BC021743 D28461 NM_000979	34713	-	NM_004605|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##NM_177973|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##U92315|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##BC034694|SULT2B1|6820|sulfotransferase family, cytosolic, 2B, member 1##AB067470|LMTK3|114783|lemur tyrosine kinase 3##NM_001080434|LMTK3|114783|lemur tyrosine kinase 3##AF353721|SPACA4|171169|sperm acrosome associated 4##NM_133498|SPACA4|171169|sperm acrosome associated 4##AY358387|SPACA4|171169|sperm acrosome associated 4##BC047334|SPACA4|171169|sperm acrosome associated 4##BC111970|FAM83E|54854|family with sequence similarity 83, member E##BC111972|FAM83E|54854|family with sequence similarity 83, member E##NM_017708|FAM83E|54854|family with sequence similarity 83, member E##AK000207|FAM83E|54854|family with sequence similarity 83, member E##L11566|RPL18|6141|ribosomal protein L18##BC009708|RPL18|6141|ribosomal protein L18##AK026558|RPL18|6141|ribosomal protein L18##AK293386|RPL18|6141|ribosomal protein L18##BC021743|RPL18|6141|ribosomal protein L18##D28461|RPL18|6141|ribosomal protein L18##NM_000979|RPL18|6141|ribosomal protein L18	0.0	0.967091	CTCF.p2:0:0.967
chr5	59790593	59790719	reg1017251.p1	3.755	+	TSC_hg19_v1_chr5_+_59784006 AL050198 AK094518	-6616	+	TSC_hg19_v1_chr5_-_59783893 AY245866 AK307363 NM_001165899	-6752	-	NM_001104631	-601036	-	TSC_hg19_v1_chr5_-_59995928 AF490257	205260	-	TSC_hg19_v1_chr5_-_59995963 BC019075 AF303178 AK002114 AK299242 AK300782 AK290684 NM_001145208 NM_018369	205309	-	AB181393 BC094792 TSC_hg19_v1_chr5_-_60140097 NM_001104558 NM_024930	349415	-	AL050198|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)##AK094518|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)##AY245866|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AK307363|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001165899|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001104631|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF490257|DEPDC1B|55789|DEP domain containing 1B##BC019075|DEPDC1B|55789|DEP domain containing 1B##AF303178|DEPDC1B|55789|DEP domain containing 1B##AK002114|DEPDC1B|55789|DEP domain containing 1B##AK299242|DEPDC1B|55789|DEP domain containing 1B##AK300782|DEPDC1B|55789|DEP domain containing 1B##AK290684|DEPDC1B|55789|DEP domain containing 1B##NM_001145208|DEPDC1B|55789|DEP domain containing 1B##NM_018369|DEPDC1B|55789|DEP domain containing 1B##AB181393|ELOVL7|79993|ELOVL fatty acid elongase 7##BC094792|ELOVL7|79993|ELOVL fatty acid elongase 7##NM_001104558|ELOVL7|79993|ELOVL fatty acid elongase 7##NM_024930|ELOVL7|79993|ELOVL fatty acid elongase 7	0.0	0.0	
chr7	42968473	42968618	reg1014626.p1	3.755	+	TSC_hg19_v1_chr7_-_42951670 BC000769 BC001845 AK024820 AK225194 AK298865 NM_001099858 NM_024054	-16956	-	TSC_hg19_v1_chr7_-_42276797 AK308429	-691750	-	NM_000168	-691928	-	BC002900 AB528708 CR450317 CU690460 D00760 BC047697 TSC_hg19_v1_chr7_-_42971774 AK311369 BX641097 AK222976	3208	-	AK290654 TSC_hg19_v1_chr7_-_42971781 NM_002787	3256	-	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	3424	+	BC000769|C7orf25|79020|chromosome 7 open reading frame 25##BC001845|C7orf25|79020|chromosome 7 open reading frame 25##AK024820|C7orf25|79020|chromosome 7 open reading frame 25##AK225194|C7orf25|79020|chromosome 7 open reading frame 25##AK298865|C7orf25|79020|chromosome 7 open reading frame 25##NM_001099858|C7orf25|79020|chromosome 7 open reading frame 25##NM_024054|C7orf25|79020|chromosome 7 open reading frame 25##AK308429|GLI3|2737|GLI family zinc finger 3##NM_000168|GLI3|2737|GLI family zinc finger 3##BC002900|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##CR450317|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##D00760|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##BC047697|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##BX641097|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##AK222976|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##AK290654|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##NM_002787|PSMA2|5683|proteasome (prosome, macropain) subunit, alpha type, 2##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32	0.992031	0.0	denovo_WM_7:41:0.783
chr7	47968665	47968731	reg1017194.p2	3.755	+	AK024728 NM_025031 BC113679 BC113681 AK092057 AX747337	-133760	+	AK126096 NM_001123065	-273857	+	TSC_hg19_v1_chr7_-_47622186 AB208995	-346512	-	AB061683 NM_138295	19355	-	BT019481 BT019482 CR536552 Y16893 AB463759 BC007013 TSC_hg19_v1_chr7_-_48019149 AK294117 AK290459 AF076844 AF110393	50454	-	TSC_hg19_v1_chr7_-_48019247 NM_004507	50531	-	AK024728|C7orf69|80099|chromosome 7 open reading frame 69##NM_025031|C7orf69|80099|chromosome 7 open reading frame 69##BC113679|C7orf69|80099|chromosome 7 open reading frame 69##BC113681|C7orf69|80099|chromosome 7 open reading frame 69##AK092057|PKD1L1|168507|polycystic kidney disease 1 like 1##AK126096|C7orf65|401335|chromosome 7 open reading frame 65##NM_001123065|C7orf65|401335|chromosome 7 open reading frame 65##AB208995|TNS3|64759|tensin 3##AB061683|PKD1L1|168507|polycystic kidney disease 1 like 1##NM_138295|PKD1L1|168507|polycystic kidney disease 1 like 1##BT019481|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BT019482|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##CR536552|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##Y16893|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##BC007013|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK294117|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AK290459|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF076844|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##AF110393|HUS1|3364|HUS1 checkpoint homolog (S. pombe)##NM_004507|HUS1|3364|HUS1 checkpoint homolog (S. pombe)	0.0	0.0	
chr14	21945313	21945423	reg1016445.p2	3.754	+	TSC_hg19_v1_chr14_+_21945364 AK295913	-7	+	TSC_hg19_v1_chr14_+_21945341 NM_014828 BC035050	-26	+	CU676744 DQ893243 DQ896572 AK027730 TSC_hg19_v1_chr14_-_21945094 AK296057 BX647601 BC066366 AK315354 AK307349 BC020839 AF468652 NM_032846	-279	-	TSC_hg19_v1_chr14_+_21945382 AK299807 AK298555 BC020727 BC013689 BC020292 AB018280	37	+	EU446825 TSC_hg19_v1_chr14_-_21979476 BC052244 AK000222 BC001650 BC003031 BC014427 NM_019852 AK300289 AK304251 AK304570	34067	-	AK294051 BC024245 AK296414 BC090958 AK289358 TSC_hg19_v1_chr14_-_21994473	49044	-	AK295913|TOX4|9878|TOX high mobility group box family member 4##NM_014828|TOX4|9878|TOX high mobility group box family member 4##BC035050|TOX4|9878|TOX high mobility group box family member 4##DQ893243|RAB2B|84932|RAB2B, member RAS oncogene family##DQ896572|RAB2B|84932|RAB2B, member RAS oncogene family##AK027730|RAB2B|84932|RAB2B, member RAS oncogene family##AK296057|RAB2B|84932|RAB2B, member RAS oncogene family##BX647601|RAB2B|84932|RAB2B, member RAS oncogene family##BC066366|RAB2B|84932|RAB2B, member RAS oncogene family##AK315354|RAB2B|84932|RAB2B, member RAS oncogene family##AK307349|RAB2B|84932|RAB2B, member RAS oncogene family##BC020839|RAB2B|84932|RAB2B, member RAS oncogene family##AF468652|RAB2B|84932|RAB2B, member RAS oncogene family##NM_032846|RAB2B|84932|RAB2B, member RAS oncogene family##AK299807|TOX4|9878|TOX high mobility group box family member 4##AK298555|TOX4|9878|TOX high mobility group box family member 4##BC020727|TOX4|9878|TOX high mobility group box family member 4##BC013689|TOX4|9878|TOX high mobility group box family member 4##BC020292|TOX4|9878|TOX high mobility group box family member 4##AB018280|TOX4|9878|TOX high mobility group box family member 4##EU446825|METTL3|56339|methyltransferase like 3##BC052244|METTL3|56339|methyltransferase like 3##AK000222|METTL3|56339|methyltransferase like 3##BC001650|METTL3|56339|methyltransferase like 3##BC003031|METTL3|56339|methyltransferase like 3##BC014427|METTL3|56339|methyltransferase like 3##NM_019852|METTL3|56339|methyltransferase like 3##AK300289|METTL3|56339|methyltransferase like 3##AK304251|METTL3|56339|methyltransferase like 3##AK304570|METTL3|56339|methyltransferase like 3##AK294051|SALL2|6297|sal-like 2 (Drosophila)##BC024245|SALL2|6297|sal-like 2 (Drosophila)##AK296414|SALL2|6297|sal-like 2 (Drosophila)##BC090958|SALL2|6297|sal-like 2 (Drosophila)##AK289358|SALL2|6297|sal-like 2 (Drosophila)	0.0	0.266636	CTCF.p2:-87:0.267
chr14	52340066	52340233	reg1013820.p1	3.754	+	TSC_hg19_v1_chr14_+_52327416 BC020774	-12713	+	TSC_hg19_v1_chr14_+_52327387 AL832878	-12757	+	AK001024 AK311334 TSC_hg19_v1_chr14_+_52327363	-12785	+	AF087877 AF100755 AF151857 DQ525179 NM_016039 TSC_hg19_v1_chr14_+_52456231 AK312004 BC001722	116105	+	TSC_hg19_v1_chr14_+_52456323 EU446806 AB463506 AY817175	116190	+	AJ223500 D86425 AB385187 CU690132 TSC_hg19_v1_chr14_-_52535721	195573	-	BC020774|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AL832878|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AK001024|GNG2|54331|guanine nucleotide binding protein (G protein), gamma 2##AF087877|C14orf166|51637|chromosome 14 open reading frame 166##AF100755|C14orf166|51637|chromosome 14 open reading frame 166##AF151857|C14orf166|51637|chromosome 14 open reading frame 166##DQ525179|C14orf166|51637|chromosome 14 open reading frame 166##NM_016039|C14orf166|51637|chromosome 14 open reading frame 166##AK312004|C14orf166|51637|chromosome 14 open reading frame 166##BC001722|C14orf166|51637|chromosome 14 open reading frame 166##EU446806|C14orf166|51637|chromosome 14 open reading frame 166##AY817175|C14orf166|51637|chromosome 14 open reading frame 166##AJ223500|NID2|22795|nidogen 2 (osteonidogen)##D86425|NID2|22795|nidogen 2 (osteonidogen)	0.0	0.0	
chr15	65620289	65620361	reg1001734.p1	3.754	+	BC006389 NM_017851 TSC_hg19_v1_chr15_-_65579223 AK000516	-41165	-	BC035776 AF035408 AY358904 AK225652 AK225926 AK313352 TSC_hg19_v1_chr15_-_65503811 NM_003613	-116513	-	TSC_hg19_v1_chr15_-_65477676 AL136922 AK308133 AK292316 AK310614	-142639	-	BC042054 TSC_hg19_v1_chr15_-_65670341 BC067107 NM_004884	50026	-	TSC_hg19_v1_chr15_-_65715258 AB529157	94920	-	TSC_hg19_v1_chr15_-_65715412 AB052622 NM_020962	95076	-	BC006389|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##NM_017851|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##AK000516|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##BC035776|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AF035408|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AY358904|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225652|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225926|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK313352|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##NM_003613|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AL136922|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK308133|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK292316|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK310614|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC042054|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##BC067107|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##NM_004884|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##AB052622|IGDCC4|57722|immunoglobulin superfamily, DCC subclass, member 4##NM_020962|IGDCC4|57722|immunoglobulin superfamily, DCC subclass, member 4	0.0	0.0	
chr10	85956487	85956598	reg1019149.p1	3.753	+	AB593154 TSC_hg19_v1_chr10_+_85954408 AB593155 BC038799 NM_001171971 NM_033100 AB463200 AB053448	-2089	+	NM_207373 TSC_hg19_v1_chr10_+_85933558 AY358751	-22983	+	BC033760 BC051760 TSC_hg19_v1_chr10_-_85931861	-24750	-	BX648524 NM_001017924 BC140765 BC144475	28771	-	AB463829 AB031547 NM_015613 DQ426882 DQ426881	44725	-	BX641033 NM_001012720 NM_001012722 NM_002921 U14910 BC011349 BC008094 BC042536 CU675929 DQ892074 DQ895267	48285	+	AB593154|CDHR1|92211|cadherin-related family member 1##AB593155|CDHR1|92211|cadherin-related family member 1##BC038799|CDHR1|92211|cadherin-related family member 1##NM_001171971|CDHR1|92211|cadherin-related family member 1##NM_033100|CDHR1|92211|cadherin-related family member 1##AB053448|CDHR1|92211|cadherin-related family member 1##NM_207373|C10orf99|387695|chromosome 10 open reading frame 99##AY358751|C10orf99|387695|chromosome 10 open reading frame 99##BC033760|LOC642934|642934|uncharacterized LOC642934##BC051760|LOC642934|642934|uncharacterized LOC642934##BX648524|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##NM_001017924|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##BC140765|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##BC144475|LRIT2|340745|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2##AB031547|LRIT1|26103|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1##NM_015613|LRIT1|26103|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1##BX641033|RGR|5995|retinal G protein coupled receptor##NM_001012720|RGR|5995|retinal G protein coupled receptor##NM_001012722|RGR|5995|retinal G protein coupled receptor##NM_002921|RGR|5995|retinal G protein coupled receptor##U14910|RGR|5995|retinal G protein coupled receptor##BC011349|RGR|5995|retinal G protein coupled receptor##BC008094|RGR|5995|retinal G protein coupled receptor##BC042536|RGR|5995|retinal G protein coupled receptor##DQ892074|RGR|5995|retinal G protein coupled receptor##DQ895267|RGR|5995|retinal G protein coupled receptor	0.0	0.0	
chr11	102401616	102401748	reg1019782.p1	3.753	+	AB528509 CU678546 DQ893132 EU176770 TSC_hg19_v1_chr11_-_102401479 X07819 Z11887 BC003635 AK293359 NM_002423 AK309687 AK222980	-223	-	CU689316 DQ891654 DQ894842 TSC_hg19_v1_chr11_-_102323497 AY358696 BC032296 AY157580 AK075420 AY008283 AK225790 NM_052932	-78069	-	TSC_hg19_v1_chr11_+_102217954 BX647978 NM_001166 AF207599 BC028578	-183654	+	AB527354 NM_004771 Y12779	94373	-	AB527320 AF195192 AY358752 NM_022122	174773	-	BC074988 BC074989 BC144094 J05556 AK292659 AK303388 AK303511 AK313374 NM_002424	193971	-	DQ893132|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##EU176770|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##X07819|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##Z11887|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##BC003635|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK293359|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##NM_002423|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK309687|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##AK222980|MMP7|4316|matrix metallopeptidase 7 (matrilysin, uterine)##DQ891654|TMEM123|114908|transmembrane protein 123##DQ894842|TMEM123|114908|transmembrane protein 123##AY358696|TMEM123|114908|transmembrane protein 123##BC032296|TMEM123|114908|transmembrane protein 123##AY157580|TMEM123|114908|transmembrane protein 123##AK075420|TMEM123|114908|transmembrane protein 123##AY008283|TMEM123|114908|transmembrane protein 123##AK225790|TMEM123|114908|transmembrane protein 123##NM_052932|TMEM123|114908|transmembrane protein 123##BX647978|BIRC2|329|baculoviral IAP repeat containing 2##NM_001166|BIRC2|329|baculoviral IAP repeat containing 2##BC028578|BIRC2|329|baculoviral IAP repeat containing 2##NM_004771|MMP20|9313|matrix metallopeptidase 20##Y12779|MMP20|9313|matrix metallopeptidase 20##AF195192|MMP27|64066|matrix metallopeptidase 27##AY358752|MMP27|64066|matrix metallopeptidase 27##NM_022122|MMP27|64066|matrix metallopeptidase 27##BC074988|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##BC074989|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##BC144094|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##J05556|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK292659|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK303388|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK303511|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##AK313374|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)##NM_002424|MMP8|4317|matrix metallopeptidase 8 (neutrophil collagenase)	0.01577	0.0	
chr12	8059862	8059942	reg1012444.p1	3.753	+	AK299037 AK316238 TSC_hg19_v1_chr12_-_8043786	-16134	-	AK126026 AK122783 TSC_hg19_v1_chr12_-_8025469 AK302881 AF481878 BC060766 AF481879 NM_153449	-34436	-	AK290896 TSC_hg19_v1_chr12_+_7942025 BC069807 BC098275 BC099704 EU446847 AY230262 AY578089	-117785	+	CR457413 CU691674 DQ891118 DQ894297 DQ894299 AB209607 BC039196 AK304509 AK298673 AK312386 M20681 TSC_hg19_v1_chr12_-_8088888 NM_006931	28864	-	TSC_hg19_v1_chr12_+_8185313 BC032608 NM_018416	125588	+	TSC_hg19_v1_chr12_-_8218956 U28488 AK290242 AK312458 BC020742 NM_004054 AK223388	159051	-	AK299037|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK316238|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK126026|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK122783|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK302881|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481878|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##BC060766|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AF481879|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##NM_153449|SLC2A14|144195|solute carrier family 2 (facilitated glucose transporter), member 14##AK290896|NANOG|79923|Nanog homeobox##BC069807|NANOG|79923|Nanog homeobox##BC098275|NANOG|79923|Nanog homeobox##BC099704|NANOG|79923|Nanog homeobox##EU446847|NANOG|79923|Nanog homeobox##AY230262|NANOG|79923|Nanog homeobox##AY578089|NANOG|79923|Nanog homeobox##CR457413|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ891118|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894297|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##DQ894299|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AB209607|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##BC039196|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK304509|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK298673|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##AK312386|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##M20681|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_006931|SLC2A3|6515|solute carrier family 2 (facilitated glucose transporter), member 3##NM_018416|FOXJ2|55810|forkhead box J2##U28488|C3AR1|719|complement component 3a receptor 1##AK290242|C3AR1|719|complement component 3a receptor 1##AK312458|C3AR1|719|complement component 3a receptor 1##BC020742|C3AR1|719|complement component 3a receptor 1##NM_004054|C3AR1|719|complement component 3a receptor 1##AK223388|C3AR1|719|complement component 3a receptor 1	0.991792	0.087754	
chr14	84596065	84596131	reg1014416.p2	3.753	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-2595871	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-2595950	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-2731272	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	1400375	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	1400443	+	TSC_hg19_v1_chr14_+_85999692 AK297248	1403487	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.022633	0.0	
chr15	64769063	64769145	reg1017429.p1	3.753	+	TSC_hg19_v1_chr15_+_64752786 BC142647	-16245	+	NM_016213 TSC_hg19_v1_chr15_+_64680041 BC012448 AK314319 AB464298 EU446746	-89068	+	AF529370 AY598324 AB463081 CU675545 BC005832 D14657 BC007101 TSC_hg19_v1_chr15_-_64673641 AK290748 BC016782 NM_001029989 NM_014736	-95469	-	NM_015042	22514	+	AB056456 TSC_hg19_v1_chr15_+_64885153	116049	+	BC119629 BC119630 BC148316 BC127630 TSC_hg19_v1_chr15_-_64995360 BC127631 AF242520 AF242521	226256	-	BC142647|ZNF609|23060|zinc finger protein 609##NM_016213|TRIP4|9325|thyroid hormone receptor interactor 4##BC012448|TRIP4|9325|thyroid hormone receptor interactor 4##AK314319|TRIP4|9325|thyroid hormone receptor interactor 4##EU446746|TRIP4|9325|thyroid hormone receptor interactor 4##AF529370|KIAA0101|9768|KIAA0101##AY598324|KIAA0101|9768|KIAA0101##BC005832|KIAA0101|9768|KIAA0101##D14657|KIAA0101|9768|KIAA0101##BC007101|KIAA0101|9768|KIAA0101##AK290748|KIAA0101|9768|KIAA0101##BC016782|KIAA0101|9768|KIAA0101##NM_001029989|KIAA0101|9768|KIAA0101##NM_014736|KIAA0101|9768|KIAA0101##NM_015042|ZNF609|23060|zinc finger protein 609##BC119629|OAZ2|4947|ornithine decarboxylase antizyme 2##BC119630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC148316|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127630|OAZ2|4947|ornithine decarboxylase antizyme 2##BC127631|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242520|OAZ2|4947|ornithine decarboxylase antizyme 2##AF242521|OAZ2|4947|ornithine decarboxylase antizyme 2	0.0	0.0	
chr15	76602786	76602966	reg1009387.p2	3.753	+	TSC_hg19_v1_chr15_+_76352323 AK056777 AK308676	-250547	+	TSC_hg19_v1_chr15_+_76352281 AK095509 NM_152335	-250587	+	AK311204 TSC_hg19_v1_chr15_-_76352131	-250774	-	BT009796 J04058 TSC_hg19_v1_chr15_-_76603737 AB529049 BC095457	856	-	TSC_hg19_v1_chr15_-_76603771 AK300044 BC015526 D28380	889	-	TSC_hg19_v1_chr15_-_76603791 BC029995	921	-	AK308676|C15orf27|123591|chromosome 15 open reading frame 27##AK095509|C15orf27|123591|chromosome 15 open reading frame 27##NM_152335|C15orf27|123591|chromosome 15 open reading frame 27##AK311204|NRG4|145957|neuregulin 4##BT009796|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##J04058|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC095457|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##AK300044|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC015526|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide##BC029995|ETFA|2108|electron-transfer-flavoprotein, alpha polypeptide	0.0	0.0	
chr16	21610810	21610903	reg1006884.p2	3.753	+	TSC_hg19_v1_chr16_-_21531777 BC071656 AB040413 AB055225 AB055227	-79104	-	BC036263 NM_130464	-174199	-	BX648477 NM_001014444 NM_001888	-296469	-	TSC_hg19_v1_chr16_+_21610912 NM_001077180 NM_016025 AJ278577 AJ278578 AK074529 BC000195 AK313077 AK075022 AK075237	34	+	AF151839 TSC_hg19_v1_chr16_+_21611174	298	+	TSC_hg19_v1_chr16_-_21663930 DQ892013 DQ895202 EU176227 EU176324 AK313860 AK223286 AK290910 AK293703 BC017844	53064	-	BC071656|SLC7A5P2|387254|solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##NM_130464|NPIPL3|23117|nuclear pore complex interacting protein-like 3##BX648477|CRYM|1428|crystallin, mu##NM_001014444|CRYM|1428|crystallin, mu##NM_001888|CRYM|1428|crystallin, mu##NM_001077180|METTL9|51108|methyltransferase like 9##NM_016025|METTL9|51108|methyltransferase like 9##AJ278577|METTL9|51108|methyltransferase like 9##AJ278578|METTL9|51108|methyltransferase like 9##AK074529|METTL9|51108|methyltransferase like 9##BC000195|METTL9|51108|methyltransferase like 9##AK313077|METTL9|51108|methyltransferase like 9##AK075022|METTL9|51108|methyltransferase like 9##AK075237|METTL9|51108|methyltransferase like 9##AF151839|METTL9|51108|methyltransferase like 9##DQ892013|IGSF6|10261|immunoglobulin superfamily, member 6##DQ895202|IGSF6|10261|immunoglobulin superfamily, member 6##EU176227|IGSF6|10261|immunoglobulin superfamily, member 6##EU176324|IGSF6|10261|immunoglobulin superfamily, member 6##AK313860|IGSF6|10261|immunoglobulin superfamily, member 6##AK223286|IGSF6|10261|immunoglobulin superfamily, member 6##AK290910|IGSF6|10261|immunoglobulin superfamily, member 6##AK293703|IGSF6|10261|immunoglobulin superfamily, member 6##BC017844|IGSF6|10261|immunoglobulin superfamily, member 6	0.0	0.032958	
chr16	58340163	58340304	reg1001685.p1	3.753	+	AK302175 AK058068 BC057843 NM_001080492	-11319	-	TSC_hg19_v1_chr16_+_58283871 AK299066 NM_001142302 NM_014157 AK314300 AL136785 BC126445 BC126447 AF161550 AB462987 AM392831 CR533506 HQ258203	-56365	+	DQ893025 DQ896269 AB463465 BC008812 NM_001896	-108522	-	NM_001126129 NM_001126130 NM_022770 TSC_hg19_v1_chr16_+_58426340 AK315622 AK023974 BC014437 BC005879 CR457283	86168	+	NM_020465 TSC_hg19_v1_chr16_+_58497607	157347	+	TSC_hg19_v1_chr16_+_58497628 AB021172	157405	+	AK302175|PRSS54|221191|protease, serine, 54##AK058068|PRSS54|221191|protease, serine, 54##BC057843|PRSS54|221191|protease, serine, 54##NM_001080492|PRSS54|221191|protease, serine, 54##AK299066|CCDC113|29070|coiled-coil domain containing 113##NM_001142302|CCDC113|29070|coiled-coil domain containing 113##NM_014157|CCDC113|29070|coiled-coil domain containing 113##AK314300|CCDC113|29070|coiled-coil domain containing 113##AL136785|CCDC113|29070|coiled-coil domain containing 113##BC126445|CCDC113|29070|coiled-coil domain containing 113##BC126447|CCDC113|29070|coiled-coil domain containing 113##AF161550|CCDC113|29070|coiled-coil domain containing 113##AM392831|CCDC113|29070|coiled-coil domain containing 113##CR533506|CCDC113|29070|coiled-coil domain containing 113##HQ258203|CCDC113|29070|coiled-coil domain containing 113##DQ893025|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##DQ896269|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##BC008812|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001896|CSNK2A2|1459|casein kinase 2, alpha prime polypeptide##NM_001126129|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_001126130|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_022770|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK315622|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##AK023974|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC014437|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##BC005879|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##CR457283|GINS3|64785|GINS complex subunit 3 (Psf3 homolog)##NM_020465|NDRG4|65009|NDRG family member 4##AB021172|NDRG4|65009|NDRG family member 4	0.0	0.0	
chr2	214012357	214012473	reg1017107.p1	3.753	+	BC143741 BC143747 BC143749 BC112199 L07868 TSC_hg19_v1_chr2_-_213403308 AK308606 NM_001042599 NM_005235	-609100	-	AK316425 NM_001122634 AK302778 AY317138	-2554330	+	NM_001875 TSC_hg19_v1_chr2_+_211421324 AK289749 BC020695 BC058010 AF154830 D90282 BC140943 AB384735 AB180933 AB180934 AB180935 AB180936 AB180937 AB180938 Y15793	-2591026	+	AK301503 AF130863 NM_016260	2640	-	BC028936 NM_001079526	3917	-	AK124960 NM_001242575	136513	-	BC143741|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143747|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC143749|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##BC112199|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##L07868|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK308606|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_001042599|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##NM_005235|ERBB4|2066|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)##AK316425|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001122634|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK302778|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AY317138|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##NM_001875|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK289749|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC020695|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC058010|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AF154830|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##D90282|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##BC140943|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180933|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180934|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180935|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180936|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180937|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AB180938|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##Y15793|CPS1|1373|carbamoyl-phosphate synthase 1, mitochondrial##AK301503|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AF130863|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_016260|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451	0.186185	0.0	
chr2	24565881	24566061	reg1014345.p1	3.753	+	BC050462 NM_001040710	-168000	+	TSC_hg19_v1_chr2_+_24346339 NM_001145710	-219612	+	TSC_hg19_v1_chr2_-_24346174 BC029523 NM_199346 BC043236 AK292601	-219727	-	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	17509	-	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	241406	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	450267	-	BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##NM_001145710|LOC375190|375190|UPF0638 protein B##BC029523|PFN4|375189|profilin family, member 4##NM_199346|PFN4|375189|profilin family, member 4##BC043236|PFN4|375189|profilin family, member 4##AK292601|PFN4|375189|profilin family, member 4##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1	0.998338	0.0	denovo_WM_7:-2:0.457	denovo_WM_7:-3:0.457
chr8	119635393	119635561	reg1019081.p2	3.753	+	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	-1270	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	-1352	-	AK313129 S79639 TSC_hg19_v1_chr8_-_119124066 NM_000127	-511516	-	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	328743	-	AK291791 NM_006438 BC103815 BC103816 AY359038 AB002631	443992	+	TSC_hg19_v1_chr8_+_120220616 BC012367 NM_052886 AY007723 AK172820 AK312030 DQ890584 DQ893743	585162	+	NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##AK313129|EXT1|2131|exostosin 1##S79639|EXT1|2131|exostosin 1##NM_000127|EXT1|2131|exostosin 1##AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK291791|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##NM_006438|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103815|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103816|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AY359038|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AB002631|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC012367|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_052886|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AY007723|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK172820|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK312030|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ890584|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ893743|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)	0.973261	0.0	denovo_WM_7:-35:0.599	denovo_WM_7:-37:0.228
chr9	123342525	123342629	reg1012925.p2	3.753	+	AB489151 BC136275 BC143732 BC143734 BC143753 BC143755 BC143760 BC143762 BC143764 TSC_hg19_v1_chr9_-_123342438 AF448860 AB046853 BC146782 BC019577 BX537421 AL833481 BX537759 AK122913 BX537708 NM_001011649 NM_018249	-224	-	BC071702 BC065196 AF027734 BC021560 AK293649 TSC_hg19_v1_chr9_-_122131727 NM_014618	-1210919	-	TSC_hg19_v1_chr9_+_120466680 U93091 BC025294 AK226155 U88880 BC117422 BC143841 AB445638	-2875890	+	TSC_hg19_v1_chr9_-_123476749 AY358370 AK295380 NM_001080497	134140	-	AF176698 TSC_hg19_v1_chr9_-_123555558	212968	-	TSC_hg19_v1_chr9_-_123555628 BC110334 AF145024 AF193594	213044	-	BC136275|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143732|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143734|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143753|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143755|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143760|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143762|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC143764|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AF448860|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AB046853|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC146782|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC019577|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537421|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AL833481|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537759|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##AK122913|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BX537708|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_001011649|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##NM_018249|CDK5RAP2|55755|CDK5 regulatory subunit associated protein 2##BC071702|DBC1|1620|deleted in bladder cancer 1##BC065196|DBC1|1620|deleted in bladder cancer 1##AF027734|DBC1|1620|deleted in bladder cancer 1##BC021560|DBC1|1620|deleted in bladder cancer 1##AK293649|DBC1|1620|deleted in bladder cancer 1##NM_014618|DBC1|1620|deleted in bladder cancer 1##U93091|TLR4|7099|toll-like receptor 4##BC025294|TLR4|7099|toll-like receptor 4##AK226155|TLR4|7099|toll-like receptor 4##U88880|TLR4|7099|toll-like receptor 4##BC117422|TLR4|7099|toll-like receptor 4##BC143841|TLR4|7099|toll-like receptor 4##AB445638|TLR4|7099|toll-like receptor 4##AY358370|MEGF9|1955|multiple EGF-like-domains 9##AK295380|MEGF9|1955|multiple EGF-like-domains 9##NM_001080497|MEGF9|1955|multiple EGF-like-domains 9##AF176698|FBXW2|26190|F-box and WD repeat domain containing 2##BC110334|FBXW2|26190|F-box and WD repeat domain containing 2##AF145024|FBXW2|26190|F-box and WD repeat domain containing 2##AF193594|FBXW2|26190|F-box and WD repeat domain containing 2	0.040696	0.0	
chrX	47801193	47801273	reg1008419.p1	3.753	+	TSC_hg19_v1_chrX_+_47696322 BC039609	-104890	+	TSC_hg19_v1_chrX_+_47696313 AK126949 NM_007137	-104936	+	TSC_hg19_v1_chrX_-_47518553 AF083241 AK312072 AF092737 NM_004182 NM_153477	-282669	-	TSC_hg19_v1_chrX_-_47863389 BC114216 AK299325 AK122874 NM_001007088 NM_006962 NM_001178099	62120	-	AY358844 NM_205856	62500	+	NM_001079900 AF217622	65939	+	BC039609|ZNF81|347344|zinc finger protein 81##AK126949|ZNF81|347344|zinc finger protein 81##NM_007137|ZNF81|347344|zinc finger protein 81##AF083241|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AK312072|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##AF092737|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_004182|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##NM_153477|UXT|8409|ubiquitously-expressed, prefoldin-like chaperone##BC114216|ZNF182|7569|zinc finger protein 182##AK299325|ZNF182|7569|zinc finger protein 182##AK122874|ZNF182|7569|zinc finger protein 182##NM_001007088|ZNF182|7569|zinc finger protein 182##NM_006962|ZNF182|7569|zinc finger protein 182##NM_001178099|ZNF182|7569|zinc finger protein 182##AY358844|SPACA5|389852|sperm acrosome associated 5##NM_205856|SPACA5|389852|sperm acrosome associated 5##NM_001079900|SPACA5B|729201|sperm acrosome associated 5B##AF217622|SPACA5|389852|sperm acrosome associated 5	0.268071	0.0	denovo_WM_7:-41:0.204
chr1	157510263	157510398	reg1015322.p1	3.752	+	TSC_hg19_v1_chr1_-_157108169 BC022868 NM_005240 AK304789 AK316274 NM_001145312	-402047	-	TSC_hg19_v1_chr1_-_157108158 L16464	-402180	-	AK131392 NM_001004341	-440731	-	AF397453 BC101066 BC101067 BC101068 BC101069 AF343662 AF343663 AF343664 AF343665 AK301356 AL834187 AY358085 AK311561 AK300010 AF369794 NM_001195388 NM_031281	11900	-	AF329490 AF397452 BC143628 BC125173 BC125174 AF343659 AF343660 AF343661 NM_031282	57471	-	DQ892459 DQ895672 AY043466 AF416901 AF416902 AF416903 AF416904 AF416905 BC028933 BC013698 AK301257 AF459027 NM_052939 AK098122	160197	-	BC022868|ETV3|2117|ets variant 3##NM_005240|ETV3|2117|ets variant 3##AK304789|ETV3|2117|ets variant 3##AK316274|ETV3|2117|ets variant 3##NM_001145312|ETV3|2117|ets variant 3##L16464|ETV3|2117|ets variant 3##AK131392|ETV3L|440695|ets variant 3-like##NM_001004341|ETV3L|440695|ets variant 3-like##AF397453|FCRL5|83416|Fc receptor-like 5##BC101066|FCRL5|83416|Fc receptor-like 5##BC101067|FCRL5|83416|Fc receptor-like 5##BC101068|FCRL5|83416|Fc receptor-like 5##BC101069|FCRL5|83416|Fc receptor-like 5##AF343662|FCRL5|83416|Fc receptor-like 5##AF343663|FCRL5|83416|Fc receptor-like 5##AF343664|FCRL5|83416|Fc receptor-like 5##AF343665|FCRL5|83416|Fc receptor-like 5##AK301356|FCRL5|83416|Fc receptor-like 5##AL834187|FCRL5|83416|Fc receptor-like 5##AY358085|FCRL5|83416|Fc receptor-like 5##AK300010|FCRL5|83416|Fc receptor-like 5##AF369794|FCRL5|83416|Fc receptor-like 5##NM_001195388|FCRL5|83416|Fc receptor-like 5##NM_031281|FCRL5|83416|Fc receptor-like 5##AF329490|FCRL4|83417|Fc receptor-like 4##AF397452|FCRL4|83417|Fc receptor-like 4##BC143628|FCRL4|83417|Fc receptor-like 4##BC125173|FCRL4|83417|Fc receptor-like 4##BC125174|FCRL4|83417|Fc receptor-like 4##AF343659|FCRL4|83417|Fc receptor-like 4##AF343660|FCRL4|83417|Fc receptor-like 4##AF343661|FCRL4|83417|Fc receptor-like 4##NM_031282|FCRL4|83417|Fc receptor-like 4##DQ892459|FCRL3|115352|Fc receptor-like 3##DQ895672|FCRL3|115352|Fc receptor-like 3##AY043466|FCRL3|115352|Fc receptor-like 3##AF416901|FCRL3|115352|Fc receptor-like 3##AF416902|FCRL3|115352|Fc receptor-like 3##AF416903|FCRL3|115352|Fc receptor-like 3##AF416904|FCRL3|115352|Fc receptor-like 3##AF416905|FCRL3|115352|Fc receptor-like 3##BC028933|FCRL3|115352|Fc receptor-like 3##BC013698|FCRL3|115352|Fc receptor-like 3##AK301257|FCRL3|115352|Fc receptor-like 3##AF459027|FCRL3|115352|Fc receptor-like 3##NM_052939|FCRL3|115352|Fc receptor-like 3##AK098122|FCRL3|115352|Fc receptor-like 3	0.995072	0.0	denovo_WM_7:-8:0.927
chr13	41606949	41607054	reg1013819.p1	3.752	+	TSC_hg19_v1_chr13_-_41593499 NM_172373	-13502	-	TSC_hg19_v1_chr13_-_41593453 M82882	-13558	-	AK304289 BC010575 BC030507 NM_001145353	-50613	-	BX640798 TSC_hg19_v1_chr13_-_41635093	28084	-	TSC_hg19_v1_chr13_+_41635650 AK000979 AK314525 AK001557 AK297536 BC108310 NM_007187 BC104879	28686	+	AL833839 EU832523 EU832605 BC051349 TSC_hg19_v1_chr13_-_41706883 BC000560 AK056633 AK299627 AK096608 NM_152903	99794	-	NM_172373|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##M82882|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK304289|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC010575|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BC030507|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##NM_001145353|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##BX640798|ELF1|1997|E74-like factor 1 (ets domain transcription factor)##AK000979|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK314525|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK001557|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AK297536|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BC108310|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##NM_007187|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##BC104879|WBP4|11193|WW domain binding protein 4 (formin binding protein 21)##AL833839|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832523|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##EU832605|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC051349|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##BC000560|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK056633|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK299627|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##AK096608|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6##NM_152903|KBTBD6|89890|kelch repeat and BTB (POZ) domain containing 6	0.986877	0.0	denovo_WM_7:-7:0.451	denovo_WM_7:-8:0.451
chr15	51170930	51171058	reg1016103.p2	3.752	+	TSC_hg19_v1_chr15_-_51057895 AK075454 AY169314 NM_032802	-113091	-	TSC_hg19_v1_chr15_-_51057864 BC025740 AK315651 AJ345028	-113135	-	TSC_hg19_v1_chr15_-_50978995 AY032950 NM_017672	-191997	-	TSC_hg19_v1_chr15_-_51200797 AK091906	29767	-	TSC_hg19_v1_chr15_+_51200903 AK297290 NM_001252127 NM_007347 BC126308 BC130466 BC144025 BC144030 AF155156 AB030653 HQ258532 CR749604	29933	+	BC127701 BC127702 TSC_hg19_v1_chr15_-_51386865 AK123281	215856	-	AK075454|SPPL2A|84888|signal peptide peptidase-like 2A##AY169314|SPPL2A|84888|signal peptide peptidase-like 2A##NM_032802|SPPL2A|84888|signal peptide peptidase-like 2A##BC025740|SPPL2A|84888|signal peptide peptidase-like 2A##AK315651|SPPL2A|84888|signal peptide peptidase-like 2A##AJ345028|SPPL2A|84888|signal peptide peptidase-like 2A##AY032950|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##NM_017672|TRPM7|54822|transient receptor potential cation channel, subfamily M, member 7##AK297290|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_001252127|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##NM_007347|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC126308|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC130466|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144025|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC144030|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AF155156|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##AB030653|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##HQ258532|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##CR749604|AP4E1|23431|adaptor-related protein complex 4, epsilon 1 subunit##BC127701|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##BC127702|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3##AK123281|TNFAIP8L3|388121|tumor necrosis factor, alpha-induced protein 8-like 3	0.974028	0.0	denovo_WM_7:4:0.974
chr16	89474412	89474478	reg1013417.p2	3.752	+	AK293862 NM_001242885	-86905	+	BC041585 TSC_hg19_v1_chr16_-_89351073	-123489	-	AF130076 TSC_hg19_v1_chr16_-_89349949 AK026001 BC058001 AK057803	-124371	-	BC052290 BC069013 BC041059 BC017437 TSC_hg19_v1_chr16_-_89556970 AY373756 NM_013275	82486	-	NM_003119 NM_199367 TSC_hg19_v1_chr16_+_89574810 BC036104 Y16610 BC007692 EU832769 GQ129312 AB527784	100369	+	TSC_hg19_v1_chr16_+_89627066 BC106058 NM_000977 NM_001243130 NM_001243131	152620	+	AK293862|LOC100287036|100287036|uncharacterized LOC100287036##NM_001242885|LOC100287036|100287036|uncharacterized LOC100287036##BC041585|ANKRD11|29123|ankyrin repeat domain 11##AF130076|ANKRD11|29123|ankyrin repeat domain 11##BC058001|ANKRD11|29123|ankyrin repeat domain 11##AK057803|ANKRD11|29123|ankyrin repeat domain 11##BC052290|ANKRD11|29123|ankyrin repeat domain 11##BC069013|ANKRD11|29123|ankyrin repeat domain 11##BC041059|ANKRD11|29123|ankyrin repeat domain 11##BC017437|ANKRD11|29123|ankyrin repeat domain 11##AY373756|ANKRD11|29123|ankyrin repeat domain 11##NM_013275|ANKRD11|29123|ankyrin repeat domain 11##NM_003119|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##NM_199367|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC036104|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##Y16610|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC007692|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##EU832769|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##GQ129312|SPG7|6687|spastic paraplegia 7 (pure and complicated autosomal recessive)##BC106058|RPL13|6137|ribosomal protein L13##NM_000977|RPL13|6137|ribosomal protein L13##NM_001243130|RPL13|6137|ribosomal protein L13##NM_001243131|RPL13|6137|ribosomal protein L13	0.0	0.0	
chr3	47365564	47365744	reg1004851.p1	3.752	+	NM_025010 TSC_hg19_v1_chr3_+_47324433 AK023765 AK291477 AK295292 BX537953 BC015962 AB527175 AM393269 AM393767 BC032620	-41226	+	BC015311 NM_001134878 NM_022342 NM_182902	-41359	-	AB384629 TSC_hg19_v1_chr3_-_47205422 AK131371 NM_014159	-160215	-	AB040904 NM_015466 TSC_hg19_v1_chr3_+_47422510 AK055157 AK299906 AK295888 AK289502 AB025194 AF290614 AK295877 BC089042	56878	+	TSC_hg19_v1_chr3_-_47517349 AK300311	151683	-	TSC_hg19_v1_chr3_-_47517417 AK291484 D83782 NM_012235	151778	-	NM_025010|KLHL18|23276|kelch-like 18 (Drosophila)##AK023765|KLHL18|23276|kelch-like 18 (Drosophila)##AK291477|KLHL18|23276|kelch-like 18 (Drosophila)##AK295292|KLHL18|23276|kelch-like 18 (Drosophila)##BX537953|KLHL18|23276|kelch-like 18 (Drosophila)##BC015962|KLHL18|23276|kelch-like 18 (Drosophila)##AM393269|KLHL18|23276|kelch-like 18 (Drosophila)##AM393767|KLHL18|23276|kelch-like 18 (Drosophila)##BC032620|KLHL18|23276|kelch-like 18 (Drosophila)##BC015311|KIF9|64147|kinesin family member 9##NM_001134878|KIF9|64147|kinesin family member 9##NM_022342|KIF9|64147|kinesin family member 9##NM_182902|KIF9|64147|kinesin family member 9##AK131371|SETD2|29072|SET domain containing 2##NM_014159|SETD2|29072|SET domain containing 2##AB040904|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##NM_015466|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK055157|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK299906|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295888|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK289502|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AB025194|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AF290614|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK295877|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##BC089042|PTPN23|25930|protein tyrosine phosphatase, non-receptor type 23##AK300311|SCAP|22937|SREBF chaperone##AK291484|SCAP|22937|SREBF chaperone##D83782|SCAP|22937|SREBF chaperone##NM_012235|SCAP|22937|SREBF chaperone	0.0	0.0	
chr7	28194503	28194622	reg1011840.p1	3.752	+	TSC_hg19_v1_chr7_+_27779811 U33821 BC050358	-414743	+	BC001764 TSC_hg19_v1_chr7_+_27779809	-414753	+	AK314292 TSC_hg19_v1_chr7_+_27779787 AK296720 BC024600 AK301064 AF090891 AK000098 AL136586	-414787	+	TSC_hg19_v1_chr7_-_28220226 AB463807 EU446615 AY372319 BC047229 BC042441	25639	-	TSC_hg19_v1_chr7_-_28220424 AK091311 AX746909 NM_175061	25844	-	L05913 NM_182899	144377	+	U33821|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC050358|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK314292|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK296720|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##BC024600|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK301064|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AF090891|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AK000098|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##AL136586|TAX1BP1|8887|Tax1 (human T-cell leukemia virus type I) binding protein 1##EU446615|JAZF1|221895|JAZF zinc finger 1##AY372319|JAZF1|221895|JAZF zinc finger 1##BC047229|JAZF1|221895|JAZF zinc finger 1##BC042441|JAZF1|221895|JAZF zinc finger 1##AK091311|JAZF1|221895|JAZF zinc finger 1##NM_175061|JAZF1|221895|JAZF zinc finger 1##L05913|CREB5|9586|cAMP responsive element binding protein 5##NM_182899|CREB5|9586|cAMP responsive element binding protein 5	0.998015	0.0	denovo_WM_7:3:0.957
chr9	1104313	1104387	reg1013421.p1	3.752	+	AF130729 NM_181872	-53741	+	TSC_hg19_v1_chr9_+_1050370 Y19052	-53980	+	TSC_hg19_v1_chr9_+_1050356 BX647565 NM_006557 BC030204 NM_001130865 AF284221 AF284222	-54006	+	BC068252 AK296373 TSC_hg19_v1_chr9_+_2015346 AK299683 BC040029 NM_003070 NM_139045	910946	+	TSC_hg19_v1_chr9_+_2621791 NM_001018056 NM_003383 L20470 AB208822	1517457	+	BC136562 BC144245 L22431 TSC_hg19_v1_chr9_+_2622097	1517724	+	AF130729|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_181872|DMRT2|10655|doublesex and mab-3 related transcription factor 2##Y19052|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BX647565|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_006557|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC030204|DMRT2|10655|doublesex and mab-3 related transcription factor 2##NM_001130865|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284221|DMRT2|10655|doublesex and mab-3 related transcription factor 2##AF284222|DMRT2|10655|doublesex and mab-3 related transcription factor 2##BC068252|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK296373|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##AK299683|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##BC040029|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_003070|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_139045|SMARCA2|6595|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2##NM_001018056|VLDLR|7436|very low density lipoprotein receptor##NM_003383|VLDLR|7436|very low density lipoprotein receptor##L20470|VLDLR|7436|very low density lipoprotein receptor##AB208822|VLDLR|7436|very low density lipoprotein receptor##BC136562|VLDLR|7436|very low density lipoprotein receptor##BC144245|VLDLR|7436|very low density lipoprotein receptor##L22431|VLDLR|7436|very low density lipoprotein receptor	0.09042	0.0	
chr12	121937821	121937913	reg1017995.p2	3.751	+	TSC_hg19_v1_chr12_-_121905104 BC028612 AK299827 AK316470	-32793	-	AF306709 TSC_hg19_v1_chr12_+_121837931 NM_025126 NM_194271 AK025439 AK225285 AK304366 BC007826 BC039029 BC046174 BC029038	-99903	+	AK025614 NM_001137559	-145856	-	TSC_hg19_v1_chr12_-_122018152 AK127328 NM_001005366	80392	-	BC115379 BC115380 TSC_hg19_v1_chr12_-_122018879 AJ459424 BX648928 NM_032590	81047	-	TSC_hg19_v1_chr12_+_122064448 BC075831 NM_032790 BC013386 BC015369 BC104633 AK027372 CU677285	126776	+	BC028612|KDM2B|84678|lysine (K)-specific demethylase 2B##AK299827|KDM2B|84678|lysine (K)-specific demethylase 2B##AK316470|KDM2B|84678|lysine (K)-specific demethylase 2B##AF306709|RNF34|80196|ring finger protein 34##NM_025126|RNF34|80196|ring finger protein 34##NM_194271|RNF34|80196|ring finger protein 34##AK025439|RNF34|80196|ring finger protein 34##AK225285|RNF34|80196|ring finger protein 34##BC007826|RNF34|80196|ring finger protein 34##BC039029|RNF34|80196|ring finger protein 34##BC046174|RNF34|80196|ring finger protein 34##AK025614|ANAPC5|51433|anaphase promoting complex subunit 5##NM_001137559|ANAPC5|51433|anaphase promoting complex subunit 5##AK127328|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_001005366|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115379|KDM2B|84678|lysine (K)-specific demethylase 2B##BC115380|KDM2B|84678|lysine (K)-specific demethylase 2B##AJ459424|KDM2B|84678|lysine (K)-specific demethylase 2B##BX648928|KDM2B|84678|lysine (K)-specific demethylase 2B##NM_032590|KDM2B|84678|lysine (K)-specific demethylase 2B##BC075831|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##NM_032790|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC013386|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC015369|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##BC104633|ORAI1|84876|ORAI calcium release-activated calcium modulator 1##AK027372|ORAI1|84876|ORAI calcium release-activated calcium modulator 1	0.045371	0.999317	CTCF.p2:7:0.999
chr15	45879461	45879553	reg1017009.p1	3.751	+	AF080470 NM_012388 TSC_hg19_v1_chr15_+_45879539 AK091740	-21	+	BC026089 NM_013309 TSC_hg19_v1_chr15_-_45815017	-64497	-	NM_032413 NM_197955 TSC_hg19_v1_chr15_+_45722808 AF228422 AK026298 BC021173 AB026707	-156710	+	TSC_hg19_v1_chr15_+_45879576 AK057545 BC004819 AK315581 AB527698	100	+	TSC_hg19_v1_chr15_+_45879759 AK128626	266	+	TSC_hg19_v1_chr15_+_45927245 AK222463 AF042284 NM_021199 AF151802 AK313111 BC016836	47742	+	AF080470|PLDN|26258|pallidin homolog (mouse)##NM_012388|PLDN|26258|pallidin homolog (mouse)##BC026089|SLC30A4|7782|solute carrier family 30 (zinc transporter), member 4##NM_013309|SLC30A4|7782|solute carrier family 30 (zinc transporter), member 4##NM_032413|C15orf48|84419|chromosome 15 open reading frame 48##NM_197955|C15orf48|84419|chromosome 15 open reading frame 48##AF228422|C15orf48|84419|chromosome 15 open reading frame 48##AK026298|C15orf48|84419|chromosome 15 open reading frame 48##BC021173|C15orf48|84419|chromosome 15 open reading frame 48##AB026707|C15orf48|84419|chromosome 15 open reading frame 48##AK057545|PLDN|26258|pallidin homolog (mouse)##BC004819|PLDN|26258|pallidin homolog (mouse)##AK315581|PLDN|26258|pallidin homolog (mouse)##AK128626|PLDN|26258|pallidin homolog (mouse)##AK222463|SQRDL|58472|sulfide quinone reductase-like (yeast)##AF042284|SQRDL|58472|sulfide quinone reductase-like (yeast)##NM_021199|SQRDL|58472|sulfide quinone reductase-like (yeast)##AF151802|SQRDL|58472|sulfide quinone reductase-like (yeast)##AK313111|SQRDL|58472|sulfide quinone reductase-like (yeast)##BC016836|SQRDL|58472|sulfide quinone reductase-like (yeast)	0.0	0.0	
chr1	63982340	63982499	reg1010503.p1	3.751	+	AK022700 TSC_hg19_v1_chr1_+_63833329 BC001253 AF102851	-149089	+	NM_013339 AF063604 TSC_hg19_v1_chr1_+_63833313	-149132	+	TSC_hg19_v1_chr1_+_63789065 L12142	-193335	+	AK309622 AF175306 BC009929 TSC_hg19_v1_chr1_-_63988878 BC014385 AK312944 NM_001206739 NM_014288	6462	-	AK292220 NM_032437 AK092219 TSC_hg19_v1_chr1_+_63989242 AK315850 AB058702 BC015814	6720	+	TSC_hg19_v1_chr1_+_64059081 AK294186 BC019920 NM_002633 BC001756 BC067763 AK312254 M83088 BC090856 DQ890618 DQ893786 CU676478 BT006961	76606	+	AK022700|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##BC001253|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AF102851|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##NM_013339|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##AF063604|ALG6|29929|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)##L12142|FOXD3|27022|forkhead box D3##AK309622|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##AF175306|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##BC009929|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##BC014385|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##AK312944|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##NM_001206739|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##NM_014288|ITGB3BP|23421|integrin beta 3 binding protein (beta3-endonexin)##AK292220|EFCAB7|84455|EF-hand calcium binding domain 7##NM_032437|EFCAB7|84455|EF-hand calcium binding domain 7##AK092219|EFCAB7|84455|EF-hand calcium binding domain 7##AK315850|EFCAB7|84455|EF-hand calcium binding domain 7##AB058702|EFCAB7|84455|EF-hand calcium binding domain 7##BC015814|EFCAB7|84455|EF-hand calcium binding domain 7##AK294186|PGM1|5236|phosphoglucomutase 1##BC019920|PGM1|5236|phosphoglucomutase 1##NM_002633|PGM1|5236|phosphoglucomutase 1##BC001756|PGM1|5236|phosphoglucomutase 1##BC067763|PGM1|5236|phosphoglucomutase 1##AK312254|PGM1|5236|phosphoglucomutase 1##M83088|PGM1|5236|phosphoglucomutase 1##BC090856|PGM1|5236|phosphoglucomutase 1##DQ890618|PGM1|5236|phosphoglucomutase 1##DQ893786|PGM1|5236|phosphoglucomutase 1##BT006961|PGM1|5236|phosphoglucomutase 1	1.984793	0.0	denovo_WM_7:-6:0.303	denovo_WM_7:-10:0.317	denovo_WM_7:-28:0.766
chr1	98164371	98164442	reg1019143.p2	3.751	+	BC030757 TSC_hg19_v1_chr1_+_97260652	-903823	+	NM_021190 TSC_hg19_v1_chr1_+_97187343 AK092216 AB051232 AK299755 AK299922 AB209266 AF530580 AF530581 AF176085 AK299897 BC016582 AB051233	-977122	+	AB055763 TSC_hg19_v1_chr1_-_97145197	-1019210	-	TSC_hg19_v1_chr1_-_98386512 AB003063 BT006740 CU678939 BC008379	222083	-	TSC_hg19_v1_chr1_-_98386557 BC131777 BC131778 BC064027 AK297515 U09178 BC108742 U20938 AK291217	222153	-	TSC_hg19_v1_chr1_-_98386605 NM_000110 NM_001160301	222200	-	NM_021190|PTBP2|58155|polypyrimidine tract binding protein 2##AK092216|PTBP2|58155|polypyrimidine tract binding protein 2##AB051232|PTBP2|58155|polypyrimidine tract binding protein 2##AK299755|PTBP2|58155|polypyrimidine tract binding protein 2##AK299922|PTBP2|58155|polypyrimidine tract binding protein 2##AB209266|PTBP2|58155|polypyrimidine tract binding protein 2##AF530580|PTBP2|58155|polypyrimidine tract binding protein 2##AF530581|PTBP2|58155|polypyrimidine tract binding protein 2##AF176085|PTBP2|58155|polypyrimidine tract binding protein 2##AK299897|PTBP2|58155|polypyrimidine tract binding protein 2##BC016582|PTBP2|58155|polypyrimidine tract binding protein 2##AB051233|PTBP2|58155|polypyrimidine tract binding protein 2##AB003063|DPYD|1806|dihydropyrimidine dehydrogenase##BT006740|DPYD|1806|dihydropyrimidine dehydrogenase##BC008379|DPYD|1806|dihydropyrimidine dehydrogenase##BC131777|DPYD|1806|dihydropyrimidine dehydrogenase##BC131778|DPYD|1806|dihydropyrimidine dehydrogenase##BC064027|DPYD|1806|dihydropyrimidine dehydrogenase##AK297515|DPYD|1806|dihydropyrimidine dehydrogenase##U09178|DPYD|1806|dihydropyrimidine dehydrogenase##BC108742|DPYD|1806|dihydropyrimidine dehydrogenase##U20938|DPYD|1806|dihydropyrimidine dehydrogenase##AK291217|DPYD|1806|dihydropyrimidine dehydrogenase##NM_000110|DPYD|1806|dihydropyrimidine dehydrogenase##NM_001160301|DPYD|1806|dihydropyrimidine dehydrogenase	0.0	0.0	
chr19	9420562	9420742	reg1009198.p4	3.751	+	BC109267 BC109268 NM_198535 EU446770	-4858	-	BC146920 NM_001079935	-58990	+	BC137147 BC137162 NM_001005191	-95106	-	NM_001202406 NM_001202407 NM_001202408 NM_001202409 NM_001202410 NM_001202411 NM_032497	13795	+	AK027700 AK308517 AK309952 AK310117 AK092348 AX747491 TSC_hg19_v1_chr19_+_9434880 AK056489 AK310020 AK310781 AK298169 NM_001172650 NM_001202412 BC006436 AL389938 BC034489	14283	+	NM_001202425 U37251	14733	+	BC109267|ZNF699|374879|zinc finger protein 699##BC109268|ZNF699|374879|zinc finger protein 699##NM_198535|ZNF699|374879|zinc finger protein 699##EU446770|ZNF266|10781|zinc finger protein 266##BC146920|OR7E24|26648|olfactory receptor, family 7, subfamily E, member 24##NM_001079935|OR7E24|26648|olfactory receptor, family 7, subfamily E, member 24##BC137147|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##BC137162|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##NM_001005191|OR7D4|125958|olfactory receptor, family 7, subfamily D, member 4##NM_001202406|ZNF559|84527|zinc finger protein 559##NM_001202407|ZNF559|84527|zinc finger protein 559##NM_001202408|ZNF559|84527|zinc finger protein 559##NM_001202409|ZNF559|84527|zinc finger protein 559##NM_001202410|ZNF559|84527|zinc finger protein 559##NM_001202411|ZNF559|84527|zinc finger protein 559##NM_032497|ZNF559|84527|zinc finger protein 559##AK027700|ZNF559|84527|zinc finger protein 559##AK308517|ZNF559|84527|zinc finger protein 559##AK309952|ZNF559|84527|zinc finger protein 559##AK310117|ZNF559|84527|zinc finger protein 559##AK092348|ZNF559|84527|zinc finger protein 559##AK056489|ZNF559|84527|zinc finger protein 559##AK310020|ZNF559|84527|zinc finger protein 559##AK310781|ZNF559|84527|zinc finger protein 559##AK298169|ZNF559|84527|zinc finger protein 559##NM_001172650|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##NM_001202412|ZNF559|84527|zinc finger protein 559##BC006436|ZNF559|84527|zinc finger protein 559##AL389938|ZNF559|84527|zinc finger protein 559##BC034489|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##NM_001202425|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough##U37251|ZNF559-ZNF177|100529215|ZNF559-ZNF177 readthrough	0.0	0.0	
chr9	95274183	95274249	reg1014703.p1	3.751	+	TSC_hg19_v1_chr9_-_95244789 AK308107 AY029191 AY358329 BC022059 BC063114 NM_001193335 NM_017680	-29420	-	AK027359 AK304501 TSC_hg19_v1_chr9_-_95244656 AK172737	-29569	-	AB000114 AK313055 AK225922 AY358872 BC046356 NM_005014	-87519	-	AB011792 AK303922 AK312820 AK296458 BX537976 NM_001197295 NM_001197296 NM_001393	24096	-	AF520811 TSC_hg19_v1_chr9_-_95432355 AK023225 AF351202	158097	-	TSC_hg19_v1_chr9_-_95432542 BC026154 NM_022755	158341	-	AK308107|ASPN|54829|asporin##AY029191|ASPN|54829|asporin##AY358329|ASPN|54829|asporin##BC022059|ASPN|54829|asporin##BC063114|ASPN|54829|asporin##NM_001193335|ASPN|54829|asporin##NM_017680|ASPN|54829|asporin##AK027359|ASPN|54829|asporin##AK304501|ASPN|54829|asporin##AK172737|ASPN|54829|asporin##AB000114|OMD|4958|osteomodulin##AK313055|OMD|4958|osteomodulin##AK225922|OMD|4958|osteomodulin##AY358872|OMD|4958|osteomodulin##BC046356|OMD|4958|osteomodulin##NM_005014|OMD|4958|osteomodulin##AB011792|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AK303922|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AK312820|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AK296458|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##BX537976|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##NM_001197295|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##NM_001197296|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##NM_001393|ECM2|1842|extracellular matrix protein 2, female organ and adipocyte specific##AF520811|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##AK023225|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##AF351202|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##BC026154|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase##NM_022755|IPPK|64768|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	0.0	0.0	
chr1	185572434	185572512	reg1011823.p1	3.750	+	NM_006469 AB020657 TSC_hg19_v1_chr1_-_185286474	-286003	-	AK292431 TSC_hg19_v1_chr1_-_185286376 DQ443528 BC067739 AJ012449 AF161553 AF205218 AK023123	-286154	-	TSC_hg19_v1_chr1_+_185126418 AK291443	-446077	+	TSC_hg19_v1_chr1_+_185703522 BC139908 AF156100 NM_031935	131103	+	NM_001127708 NM_001127709 NM_001127710 NM_005807 AK301343 AK057197 AK297718 AK301487 AK308235	692934	+	TSC_hg19_v1_chr1_-_186344269 U69668 Y00672	771784	-	NM_006469|IVNS1ABP|10625|influenza virus NS1A binding protein##AB020657|IVNS1ABP|10625|influenza virus NS1A binding protein##AK292431|IVNS1ABP|10625|influenza virus NS1A binding protein##DQ443528|IVNS1ABP|10625|influenza virus NS1A binding protein##BC067739|IVNS1ABP|10625|influenza virus NS1A binding protein##AJ012449|IVNS1ABP|10625|influenza virus NS1A binding protein##AF161553|IVNS1ABP|10625|influenza virus NS1A binding protein##AF205218|IVNS1ABP|10625|influenza virus NS1A binding protein##AK023123|IVNS1ABP|10625|influenza virus NS1A binding protein##AK291443|SWT1|54823|SWT1 RNA endoribonuclease homolog (S. cerevisiae)##AF156100|HMCN1|83872|hemicentin 1##NM_031935|HMCN1|83872|hemicentin 1##NM_001127708|PRG4|10216|proteoglycan 4##NM_001127709|PRG4|10216|proteoglycan 4##NM_001127710|PRG4|10216|proteoglycan 4##NM_005807|PRG4|10216|proteoglycan 4##AK301343|PRG4|10216|proteoglycan 4##AK057197|PRG4|10216|proteoglycan 4##AK297718|PRG4|10216|proteoglycan 4##AK301487|PRG4|10216|proteoglycan 4##AK308235|PRG4|10216|proteoglycan 4##U69668|TPR|7175|translocated promoter region (to activated MET oncogene)##Y00672|TPR|7175|translocated promoter region (to activated MET oncogene)	0.951252	0.0	denovo_WM_7:1:0.627
chr13	31035948	31036096	reg1016218.p2	3.750	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-154453	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-154871	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-611181	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	3971	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	4036	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	155605	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	0.015466	0.483464	CTCF.p2:-23:0.483
chr1	43180273	43180359	reg1017960.p1	3.750	+	BC020164 TSC_hg19_v1_chr1_+_43162416	-17915	+	TSC_hg19_v1_chr1_+_43148644 BC013838	-31732	+	TSC_hg19_v1_chr1_+_43148189 DQ891609 DQ894802 AB385072	-32106	+	AF497644 BC030524 AK298992 AK096063 AK291197 NM_001123395 NM_001185117 NM_148960	25512	-	AK027680 AK297980 TSC_hg19_v1_chr1_-_43232700 BC091513 BC143961 BC143962 AK075418 BC004160 AK027648 AF097431 AF097432 BC108311 AK027697 AK300210 BC068461	52372	-	TSC_hg19_v1_chr1_-_43232730 NM_001146289 NM_001243246 NM_022356	52426	-	BC020164|YBX1|4904|Y box binding protein 1##BC013838|YBX1|4904|Y box binding protein 1##DQ891609|YBX1|4904|Y box binding protein 1##DQ894802|YBX1|4904|Y box binding protein 1##AF497644|CLDN19|149461|claudin 19##BC030524|CLDN19|149461|claudin 19##AK298992|CLDN19|149461|claudin 19##AK096063|CLDN19|149461|claudin 19##AK291197|CLDN19|149461|claudin 19##NM_001123395|CLDN19|149461|claudin 19##NM_001185117|CLDN19|149461|claudin 19##NM_148960|CLDN19|149461|claudin 19##AK027680|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK297980|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC091513|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC143961|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC143962|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK075418|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC004160|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK027648|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AF097431|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AF097432|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC108311|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK027697|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##AK300210|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##BC068461|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_001146289|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_001243246|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1##NM_022356|LEPRE1|64175|leucine proline-enriched proteoglycan (leprecan) 1	1.996956	0.0	denovo_WM_7:-95:0.493	denovo_WM_7:-96:0.493
chr14	65782254	65782350	reg1004169.p2	3.750	+	TSC_hg19_v1_chr14_-_65569238 BC013669 NM_002382 NM_145112 NM_145113 NM_145114 NM_145116 NM_197957 AK290929 AL833643	-213064	-	AB463901 AY353088 CR542191 CU693010 X60287 M64240 AK292630 AK292189 BC003525 BC004516 AK290130 TSC_hg19_v1_chr14_-_65569205 BC036092 BC027924 BC025685	-213170	-	BC035148 BC052775 TSC_hg19_v1_chr14_+_65453967	-328336	+	AJ536056 NM_004480 NM_178155 NM_178156	95007	+	TSC_hg19_v1_chr14_+_65878582 BC142958 AK292413 AK294242 Y17976 Y17977	96318	+	BC028147 AK094893 BC045750 TSC_hg19_v1_chr14_-_65879341 BX161387	97024	-	BC013669|MAX|4149|MYC associated factor X##NM_002382|MAX|4149|MYC associated factor X##NM_145112|MAX|4149|MYC associated factor X##NM_145113|MAX|4149|MYC associated factor X##NM_145114|MAX|4149|MYC associated factor X##NM_145116|MAX|4149|MYC associated factor X##NM_197957|MAX|4149|MYC associated factor X##AK290929|MAX|4149|MYC associated factor X##AL833643|MAX|4149|MYC associated factor X##AY353088|MAX|4149|MYC associated factor X##CR542191|MAX|4149|MYC associated factor X##X60287|MAX|4149|MYC associated factor X##M64240|MAX|4149|MYC associated factor X##AK292630|MAX|4149|MYC associated factor X##AK292189|MAX|4149|MYC associated factor X##BC003525|MAX|4149|MYC associated factor X##BC004516|MAX|4149|MYC associated factor X##AK290130|MAX|4149|MYC associated factor X##BC036092|MAX|4149|MYC associated factor X##BC027924|MAX|4149|MYC associated factor X##BC025685|MAX|4149|MYC associated factor X##AJ536056|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_004480|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178155|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##NM_178156|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC142958|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##AK292413|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##AK294242|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17976|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##Y17977|FUT8|2530|fucosyltransferase 8 (alpha (1,6) fucosyltransferase)##BC028147|LOC645431|645431|uncharacterized LOC645431##AK094893|LOC645431|645431|uncharacterized LOC645431##BC045750|LOC645431|645431|uncharacterized LOC645431##BX161387|LOC645431|645431|uncharacterized LOC645431	0.995245	0.0	
chr15	101488185	101488260	reg1007309.p1	3.750	+	NM_024652 TSC_hg19_v1_chr15_+_101459533 BC068080	-28710	+	TSC_hg19_v1_chr15_-_101459500 BC073817 AK126286	-28748	-	TSC_hg19_v1_chr15_+_101420035 AK303441 AK312303 BC009245 AL110109 BC069274 U07919 AK302607 BX538027 AB385140 EU831943 EU832038	-68151	+	AB071402 TSC_hg19_v1_chr15_-_101791795	303514	-	BC046247 AY358529 AB023207 NM_014918 TSC_hg19_v1_chr15_-_101792143	303913	-	AY618665 TSC_hg19_v1_chr15_-_101817666 BC005840 AK225955 BC107774 AF157317 AF328864 AY324824 AK097011 AK026455 AK314723 NM_018445 NM_203472	329441	-	NM_024652|LRRK1|79705|leucine-rich repeat kinase 1##BC068080|LRRK1|79705|leucine-rich repeat kinase 1##AK303441|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK312303|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC009245|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AL110109|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BC069274|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##U07919|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AK302607|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##BX538027|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU831943|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##EU832038|ALDH1A3|220|aldehyde dehydrogenase 1 family, member A3##AB071402|CHSY1|22856|chondroitin sulfate synthase 1##BC046247|CHSY1|22856|chondroitin sulfate synthase 1##AY358529|CHSY1|22856|chondroitin sulfate synthase 1##AB023207|CHSY1|22856|chondroitin sulfate synthase 1##NM_014918|CHSY1|22856|chondroitin sulfate synthase 1##AY618665|SELS|55829|selenoprotein S##BC005840|SELS|55829|selenoprotein S##AK225955|SELS|55829|selenoprotein S##BC107774|SELS|55829|selenoprotein S##AF157317|SELS|55829|selenoprotein S##AF328864|SELS|55829|selenoprotein S##AY324824|SELS|55829|selenoprotein S##AK097011|SELS|55829|selenoprotein S##AK026455|SELS|55829|selenoprotein S##AK314723|SELS|55829|selenoprotein S##NM_018445|SELS|55829|selenoprotein S##NM_203472|SELS|55829|selenoprotein S	0.0	0.0	
chr18	12607146	12607244	reg1017903.p1	3.750	+	NM_001142405 NM_006553 AK056046 BC106750 TSC_hg19_v1_chr18_+_12407941	-199274	+	TSC_hg19_v1_chr18_-_12377251 BC024282 NM_006796	-229928	-	TSC_hg19_v1_chr18_-_12377199 Y18314 BC065016	-230007	-	AK301711 NM_001128627	49535	-	BC115005 TSC_hg19_v1_chr18_-_12657786	50566	-	NM_001128626 NM_020148 TSC_hg19_v1_chr18_-_12657981 AB032961	50792	-	NM_001142405|SLMO1|10650|slowmo homolog 1 (Drosophila)##NM_006553|SLMO1|10650|slowmo homolog 1 (Drosophila)##AK056046|SLMO1|10650|slowmo homolog 1 (Drosophila)##BC106750|SLMO1|10650|slowmo homolog 1 (Drosophila)##BC024282|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##NM_006796|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##Y18314|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##BC065016|AFG3L2|10939|AFG3 ATPase family gene 3-like 2 (S. cerevisiae)##AK301711|SPIRE1|56907|spire homolog 1 (Drosophila)##NM_001128627|SPIRE1|56907|spire homolog 1 (Drosophila)##BC115005|SPIRE1|56907|spire homolog 1 (Drosophila)##NM_001128626|SPIRE1|56907|spire homolog 1 (Drosophila)##NM_020148|SPIRE1|56907|spire homolog 1 (Drosophila)##AB032961|SPIRE1|56907|spire homolog 1 (Drosophila)	0.0	0.0	
chr3	57231299	57231372	reg1001393.p2	3.750	+	AF494208 NM_017563 TSC_hg19_v1_chr3_-_57199413	-31925	-	AF458067 TSC_hg19_v1_chr3_-_57199347	-32002	-	AF433662 AK302493 NM_001128615	-118022	-	NM_003865	2944	-	TSC_hg19_v1_chr3_+_57261766 BC028599 NM_012096	30412	+	AK299008 TSC_hg19_v1_chr3_+_57261776	30441	+	AF494208|IL17RD|54756|interleukin 17 receptor D##NM_017563|IL17RD|54756|interleukin 17 receptor D##AF458067|IL17RD|54756|interleukin 17 receptor D##AF433662|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##AK302493|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_001128615|ARHGEF3|50650|Rho guanine nucleotide exchange factor (GEF) 3##NM_003865|HESX1|8820|HESX homeobox 1##BC028599|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##NM_012096|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1##AK299008|APPL1|26060|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	0.0	0.0	
chr3	99225247	99225340	reg1015941.p2	3.750	+	TSC_hg19_v1_chr3_-_98620527 AK056350 AB073146 NM_080927	-604801	-	TSC_hg19_v1_chr3_+_98451544 AK315111 AF119391 BC023312 NM_006100	-773706	+	TSC_hg19_v1_chr3_+_98451106 AB022918 BC001266 AK001922 BC012092	-774048	+	AK311449 NM_001850 NM_020351 AF170702 BC013581	132157	+	TSC_hg19_v1_chr3_+_99536705 AK312483 NM_032359 BC006475 BC006512 AK291392 AK124387 BC071745 CU675421	311452	+	TSC_hg19_v1_chr3_-_99595018 EU531865 EU531866 BC027860 AK225855 AK096195 NM_014890	369698	-	AK056350|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AB073146|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##NM_080927|DCBLD2|131566|discoidin, CUB and LCCL domain containing 2##AK315111|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AF119391|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC023312|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##NM_006100|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AB022918|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC001266|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK001922|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##BC012092|ST3GAL6|10402|ST3 beta-galactoside alpha-2,3-sialyltransferase 6##AK311449|COL8A1|1295|collagen, type VIII, alpha 1##NM_001850|COL8A1|1295|collagen, type VIII, alpha 1##NM_020351|COL8A1|1295|collagen, type VIII, alpha 1##AF170702|COL8A1|1295|collagen, type VIII, alpha 1##BC013581|COL8A1|1295|collagen, type VIII, alpha 1##AK312483|C3orf26|84319|chromosome 3 open reading frame 26##NM_032359|C3orf26|84319|chromosome 3 open reading frame 26##BC006475|C3orf26|84319|chromosome 3 open reading frame 26##BC006512|C3orf26|84319|chromosome 3 open reading frame 26##AK291392|C3orf26|84319|chromosome 3 open reading frame 26##AK124387|C3orf26|84319|chromosome 3 open reading frame 26##EU531865|FILIP1L|11259|filamin A interacting protein 1-like##EU531866|FILIP1L|11259|filamin A interacting protein 1-like##BC027860|FILIP1L|11259|filamin A interacting protein 1-like##AK225855|FILIP1L|11259|filamin A interacting protein 1-like##AK096195|FILIP1L|11259|filamin A interacting protein 1-like##NM_014890|FILIP1L|11259|filamin A interacting protein 1-like	2.892167	0.0	denovo_WM_7:47:0.254	denovo_WM_7:51:0.517	denovo_WM_7:66:0.632	denovo_WM_7:-68:0.303	denovo_WM_7:-69:0.301	denovo_WM_7:-70:0.317
chr6	147191937	147192043	reg1016406.p1	3.750	+	AK097570 NM_024694 AL832192	-271853	+	TSC_hg19_v1_chr6_+_146864968 AK312202 U71127 AB529170 CU677203 DQ892882 DQ896131 AF498958 BT020016 U59878	-326982	+	BC015061 NM_006834 TSC_hg19_v1_chr6_+_146864864	-327121	+	TSC_hg19_v1_chr6_+_147524880 BC043645	332884	+	NM_001127715 NM_139244 AL834152 BC107737 BC113382 BC113408	333566	+	TSC_hg19_v1_chr6_+_147527118 AK128121	335120	+	AK097570|C6orf103|79747|chromosome 6 open reading frame 103##NM_024694|C6orf103|79747|chromosome 6 open reading frame 103##AL832192|C6orf103|79747|chromosome 6 open reading frame 103##AK312202|RAB32|10981|RAB32, member RAS oncogene family##U71127|RAB32|10981|RAB32, member RAS oncogene family##DQ892882|RAB32|10981|RAB32, member RAS oncogene family##DQ896131|RAB32|10981|RAB32, member RAS oncogene family##AF498958|RAB32|10981|RAB32, member RAS oncogene family##BT020016|RAB32|10981|RAB32, member RAS oncogene family##U59878|RAB32|10981|RAB32, member RAS oncogene family##BC015061|RAB32|10981|RAB32, member RAS oncogene family##NM_006834|RAB32|10981|RAB32, member RAS oncogene family##BC043645|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##NM_001127715|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##NM_139244|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##AL834152|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC107737|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC113382|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##BC113408|STXBP5|134957|syntaxin binding protein 5 (tomosyn)##AK128121|STXBP5|134957|syntaxin binding protein 5 (tomosyn)	0.937342	0.0	denovo_WM_7:-16:0.920
chr6_cox_hap2	3385018	3385084	reg1015486.p1	3.750	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	0.999671	0.0	
chr12	72020044	72020126	reg1012558.p2	3.749	+	TSC_hg19_v1_chr12_+_71833761 AK075399 AF062006 FN820440 NM_003667 BC096324 BC096325 BC096326 BC099650 AF061444	-186275	+	TSC_hg19_v1_chr12_+_71833577 AK294985 AK315133	-186535	+	BC005246 NM_004616	-468307	-	AB385347 CU677389 TSC_hg19_v1_chr12_-_72057432	37325	-	TSC_hg19_v1_chr12_-_72057617 AB011118 BC073843 BC064336 BX647709 BC015679	37513	-	TSC_hg19_v1_chr12_-_72057679 NM_144982	37627	-	AK075399|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AF062006|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##FN820440|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##NM_003667|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC096324|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC096325|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC096326|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC099650|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AF061444|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AK294985|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##AK315133|LGR5|8549|leucine-rich repeat containing G protein-coupled receptor 5##BC005246|TSPAN8|7103|tetraspanin 8##NM_004616|TSPAN8|7103|tetraspanin 8##AB011118|ZFC3H1|196441|zinc finger, C3H1-type containing##BC073843|ZFC3H1|196441|zinc finger, C3H1-type containing##BC064336|ZFC3H1|196441|zinc finger, C3H1-type containing##BX647709|ZFC3H1|196441|zinc finger, C3H1-type containing##BC015679|ZFC3H1|196441|zinc finger, C3H1-type containing##NM_144982|ZFC3H1|196441|zinc finger, C3H1-type containing	0.0	0.0	
chr1	29119300	29119400	reg1015621.p2	3.749	+	TSC_hg19_v1_chr1_+_29063503 AK303833 NM_001172828 AF432214 AF155095 AF192968 DQ892157 DQ895352 CU678040 AB451335 AB451484	-55813	+	NM_001173128 NM_016258 BC002559 AK292581 TSC_hg19_v1_chr1_+_29063435	-56067	+	BC001473 AK315195 AK315436 AF173868 AF203694 AK023126 TSC_hg19_v1_chr1_+_28995361	-124022	+	NM_000911 U07882	19303	+	TSC_hg19_v1_chr1_+_29213611 AB209649 NM_001166005 NM_001166007 NM_004437 NM_203342 NM_203343	94241	+	TSC_hg19_v1_chr1_+_29213624 M14993 M61733 J03796	94307	+	AK303833|YTHDF2|51441|YTH domain family, member 2##NM_001172828|YTHDF2|51441|YTH domain family, member 2##AF432214|YTHDF2|51441|YTH domain family, member 2##AF155095|YTHDF2|51441|YTH domain family, member 2##AF192968|YTHDF2|51441|YTH domain family, member 2##DQ892157|YTHDF2|51441|YTH domain family, member 2##DQ895352|YTHDF2|51441|YTH domain family, member 2##AB451335|YTHDF2|51441|YTH domain family, member 2##AB451484|YTHDF2|51441|YTH domain family, member 2##NM_001173128|YTHDF2|51441|YTH domain family, member 2##NM_016258|YTHDF2|51441|YTH domain family, member 2##BC002559|YTHDF2|51441|YTH domain family, member 2##AK292581|YTHDF2|51441|YTH domain family, member 2##BC001473|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315195|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK315436|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF173868|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AF203694|GMEB1|10691|glucocorticoid modulatory element binding protein 1##AK023126|GMEB1|10691|glucocorticoid modulatory element binding protein 1##NM_000911|OPRD1|4985|opioid receptor, delta 1##U07882|OPRD1|4985|opioid receptor, delta 1##AB209649|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166005|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_001166007|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_004437|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203342|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##NM_203343|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M14993|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##M61733|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)##J03796|EPB41|2035|erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)	0.999236	0.012699	
chr20	37897716	37897789	reg1014818.p2	3.749	+	TSC_hg19_v1_chr20_+_37590995 NM_001190809 NM_021931 AK303396 BC132669 BC143941 BC059369 AK307863 BC033453 AK296506 AK026412 HQ258480 AK296793	-306763	+	TSC_hg19_v1_chr20_+_37555059 AK303860 BC001068 BC006553 BC080188 BC063661 BC053683	-342684	+	AK055793 NM_030919 TSC_hg19_v1_chr20_+_37555024	-342763	+	BC036689 NM_005461 TSC_hg19_v1_chr20_-_39317877	1420125	-	AK310516 NM_003286 AK225095 AK292943 BC039009 BC004475 TSC_hg19_v1_chr20_+_39657500 AK310508 BC067349 J03250	1759742	+	BC136297 TSC_hg19_v1_chr20_+_39657671 U07804 U07806	1759912	+	NM_001190809|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##NM_021931|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303396|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC132669|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC143941|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC059369|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK307863|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##BC033453|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296506|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK026412|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##HQ258480|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK296793|DHX35|60625|DEAH (Asp-Glu-Ala-His) box polypeptide 35##AK303860|FAM83D|81610|family with sequence similarity 83, member D##BC001068|FAM83D|81610|family with sequence similarity 83, member D##BC006553|FAM83D|81610|family with sequence similarity 83, member D##BC080188|FAM83D|81610|family with sequence similarity 83, member D##BC063661|FAM83D|81610|family with sequence similarity 83, member D##BC053683|FAM83D|81610|family with sequence similarity 83, member D##AK055793|FAM83D|81610|family with sequence similarity 83, member D##NM_030919|FAM83D|81610|family with sequence similarity 83, member D##BC036689|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_005461|MAFB|9935|v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian)##NM_003286|TOP1|7150|topoisomerase (DNA) I##AK225095|TOP1|7150|topoisomerase (DNA) I##AK292943|TOP1|7150|topoisomerase (DNA) I##BC039009|TOP1|7150|topoisomerase (DNA) I##BC004475|TOP1|7150|topoisomerase (DNA) I##AK310508|TOP1|7150|topoisomerase (DNA) I##BC067349|TOP1|7150|topoisomerase (DNA) I##J03250|TOP1|7150|topoisomerase (DNA) I##BC136297|TOP1|7150|topoisomerase (DNA) I##U07804|TOP1|7150|topoisomerase (DNA) I##U07806|TOP1|7150|topoisomerase (DNA) I	0.0	0.982097	CTCF.p2:21:0.982
chr2	241523727	241523871	reg1014139.p1	3.749	+	BC082975 TSC_hg19_v1_chr2_+_241508114	-15691	+	TSC_hg19_v1_chr2_+_241507945 NM_018226	-15834	+	TSC_hg19_v1_chr2_-_241500482 AK056511 AK296714	-23305	-	TSC_hg19_v1_chr2_+_241526150 NM_023083 NM_023085 AK300279 AF089088 AK074807 BC004260 BC007553 AF089095 AB058748 AF089090 AF089091 AF089092 AF089093 AF089094 AF089096 AB590370 DQ893519 DQ896503	2430	+	TSC_hg19_v1_chr2_+_241544846 NM_001195381 NM_001195382 AK172786 AK290256	21041	+	AK314002 NM_005301	40862	+	BC082975|RNPEPL1|57140|arginyl aminopeptidase (aminopeptidase B)-like 1##NM_018226|RNPEPL1|57140|arginyl aminopeptidase (aminopeptidase B)-like 1##AK056511|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##AK296714|ANKMY1|51281|ankyrin repeat and MYND domain containing 1##NM_023083|CAPN10|11132|calpain 10##NM_023085|CAPN10|11132|calpain 10##AK300279|CAPN10|11132|calpain 10##AF089088|CAPN10|11132|calpain 10##AK074807|CAPN10|11132|calpain 10##BC004260|CAPN10|11132|calpain 10##BC007553|CAPN10|11132|calpain 10##AB058748|CAPN10|11132|calpain 10##AF089090|CAPN10|11132|calpain 10##AF089091|CAPN10|11132|calpain 10##AF089092|CAPN10|11132|calpain 10##AF089093|CAPN10|11132|calpain 10##AF089094|CAPN10|11132|calpain 10##AF089096|CAPN10|11132|calpain 10##DQ893519|CAPN10|11132|calpain 10##DQ896503|CAPN10|11132|calpain 10##NM_001195381|GPR35|2859|G protein-coupled receptor 35##NM_001195382|GPR35|2859|G protein-coupled receptor 35##AK172786|GPR35|2859|G protein-coupled receptor 35##AK290256|GPR35|2859|G protein-coupled receptor 35##AK314002|GPR35|2859|G protein-coupled receptor 35##NM_005301|GPR35|2859|G protein-coupled receptor 35	0.968656	0.0	denovo_WM_7:-37:0.650	denovo_WM_7:-38:0.207
chr6	122010315	122010433	reg1016293.p2	3.749	+	NM_000165 AK312324 AK297764 AK223289 AK294670 AK297402 TSC_hg19_v1_chr6_+_121756792 AK309377 AK316159 AK295460 AK297761 AK309490 M65188 X52947 BC026329	-253549	+	TSC_hg19_v1_chr6_-_121655627 AK131446 AK091554 AX747057 NM_152730	-354731	-	TSC_hg19_v1_chr6_-_119670927 BC065827 AK025599 AK307383 NM_005907	-2339453	-	TSC_hg19_v1_chr6_+_122720699 NM_001135564 NM_001243094 NM_004506	710321	+	TSC_hg19_v1_chr6_+_122720796 AK225593 AK225594 BC112323 M65217 AK294624 BC005329 BC064622 BC121050 BC121051 BC128420 AK316377 AB463722 CU675115 EU446897	710442	+	CU688532 CU689596 AL137261 TSC_hg19_v1_chr6_-_122792947 AF164794 AB033079 BC014412 BC028607 BC033029 NM_020755 AK075339 AY358429 AK128781 AF087902	782579	-	NM_000165|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK312324|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297764|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK223289|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK294670|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309377|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK295460|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK297761|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK309490|GJA1|2697|gap junction protein, alpha 1, 43kDa##M65188|GJA1|2697|gap junction protein, alpha 1, 43kDa##X52947|GJA1|2697|gap junction protein, alpha 1, 43kDa##BC026329|GJA1|2697|gap junction protein, alpha 1, 43kDa##AK131446|C6orf170|221322|chromosome 6 open reading frame 170##AK091554|C6orf170|221322|chromosome 6 open reading frame 170##NM_152730|C6orf170|221322|chromosome 6 open reading frame 170##BC065827|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK025599|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##AK307383|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_005907|MAN1A1|4121|mannosidase, alpha, class 1A, member 1##NM_001135564|HSF2|3298|heat shock transcription factor 2##NM_001243094|HSF2|3298|heat shock transcription factor 2##NM_004506|HSF2|3298|heat shock transcription factor 2##AK225593|HSF2|3298|heat shock transcription factor 2##AK225594|HSF2|3298|heat shock transcription factor 2##BC112323|HSF2|3298|heat shock transcription factor 2##M65217|HSF2|3298|heat shock transcription factor 2##AK294624|HSF2|3298|heat shock transcription factor 2##BC005329|HSF2|3298|heat shock transcription factor 2##BC064622|HSF2|3298|heat shock transcription factor 2##BC121050|HSF2|3298|heat shock transcription factor 2##BC121051|HSF2|3298|heat shock transcription factor 2##BC128420|HSF2|3298|heat shock transcription factor 2##AK316377|HSF2|3298|heat shock transcription factor 2##EU446897|HSF2|3298|heat shock transcription factor 2##AL137261|SERINC1|57515|serine incorporator 1##AF164794|SERINC1|57515|serine incorporator 1##AB033079|SERINC1|57515|serine incorporator 1##BC014412|SERINC1|57515|serine incorporator 1##BC028607|SERINC1|57515|serine incorporator 1##BC033029|SERINC1|57515|serine incorporator 1##NM_020755|SERINC1|57515|serine incorporator 1##AK075339|SERINC1|57515|serine incorporator 1##AY358429|SERINC1|57515|serine incorporator 1##AF087902|SERINC1|57515|serine incorporator 1	0.0	0.0	
chr7	100125243	100125348	reg1014262.p1	3.749	+	AK124773 NM_173564	-43746	+	BC001966 BC031622 AK314824 TSC_hg19_v1_chr7_-_100076802 BC002972 BC010406 AK296580 AK297702 AK310800 BC001486 NM_030935	-48468	-	BC031966 NM_001004323	-63402	-	TSC_hg19_v1_chr7_+_100136826 NM_006076 BC009393	11516	+	TSC_hg19_v1_chr7_+_100136847 AK314954 BC017329 AB527774 CU675942	11612	+	NM_001168682	45974	-	AK124773|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##NM_173564|NYAP1|222950|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1##BC001966|TSC22D4|81628|TSC22 domain family, member 4##BC031622|TSC22D4|81628|TSC22 domain family, member 4##AK314824|TSC22D4|81628|TSC22 domain family, member 4##BC002972|TSC22D4|81628|TSC22 domain family, member 4##BC010406|TSC22D4|81628|TSC22 domain family, member 4##AK296580|TSC22D4|81628|TSC22 domain family, member 4##AK297702|TSC22D4|81628|TSC22 domain family, member 4##BC001486|TSC22D4|81628|TSC22 domain family, member 4##NM_030935|TSC22D4|81628|TSC22 domain family, member 4##BC031966|C7orf61|402573|chromosome 7 open reading frame 61##NM_001004323|C7orf61|402573|chromosome 7 open reading frame 61##NM_006076|AGFG2|3268|ArfGAP with FG repeats 2##BC009393|AGFG2|3268|ArfGAP with FG repeats 2##AK314954|AGFG2|3268|ArfGAP with FG repeats 2##BC017329|AGFG2|3268|ArfGAP with FG repeats 2##NM_001168682|SAP25|100316904|Sin3A-associated protein, 25kDa	0.295632	0.0	
chrX	147997623	147997726	reg1017554.p1	3.749	+	TSC_hg19_v1_chrX_+_147800613 AK301927 NM_001170628	-197062	+	TSC_hg19_v1_chrX_+_147582146 NM_001169122 NM_001169123 NM_001169124 NM_001169125 NM_002025 U48436 L76569	-415486	+	BC034320 NM_152578 AY211917 AK098602	-934819	+	CU675281 AF050145 BC006170 TSC_hg19_v1_chrX_-_148586837 BX647357 L40586 M58342 AK294541 NM_000202 NM_001166550 NM_006123	589100	-	AK303548 AK310957 TSC_hg19_v1_chrX_-_148622461 AK310119	624756	-	NM_001171907 NM_001171908 NM_178124 U66049 AK294153 AY074889 AK291899 BC065539 BC104930 BC104932 BC143660 BC143661 BC143662	624920	+	AK301927|AFF2|2334|AF4/FMR2 family, member 2##NM_001170628|AFF2|2334|AF4/FMR2 family, member 2##NM_001169122|AFF2|2334|AF4/FMR2 family, member 2##NM_001169123|AFF2|2334|AF4/FMR2 family, member 2##NM_001169124|AFF2|2334|AF4/FMR2 family, member 2##NM_001169125|AFF2|2334|AF4/FMR2 family, member 2##NM_002025|AFF2|2334|AF4/FMR2 family, member 2##U48436|AFF2|2334|AF4/FMR2 family, member 2##L76569|AFF2|2334|AF4/FMR2 family, member 2##BC034320|FMR1NB|158521|fragile X mental retardation 1 neighbor##NM_152578|FMR1NB|158521|fragile X mental retardation 1 neighbor##AY211917|FMR1NB|158521|fragile X mental retardation 1 neighbor##AK098602|FMR1NB|158521|fragile X mental retardation 1 neighbor##AF050145|IDS|3423|iduronate 2-sulfatase##BC006170|IDS|3423|iduronate 2-sulfatase##BX647357|IDS|3423|iduronate 2-sulfatase##L40586|IDS|3423|iduronate 2-sulfatase##M58342|IDS|3423|iduronate 2-sulfatase##AK294541|IDS|3423|iduronate 2-sulfatase##NM_000202|IDS|3423|iduronate 2-sulfatase##NM_001166550|IDS|3423|iduronate 2-sulfatase##NM_006123|IDS|3423|iduronate 2-sulfatase##AK303548|LOC100131434|100131434|uncharacterized LOC100131434##AK310957|LOC100131434|100131434|uncharacterized LOC100131434##AK310119|LOC100131434|100131434|uncharacterized LOC100131434##NM_001171907|CXorf40A|91966|chromosome X open reading frame 40A##NM_001171908|CXorf40A|91966|chromosome X open reading frame 40A##NM_178124|CXorf40A|91966|chromosome X open reading frame 40A##U66049|CXorf40A|91966|chromosome X open reading frame 40A##AK294153|CXorf40A|91966|chromosome X open reading frame 40A##AY074889|CXorf40A|91966|chromosome X open reading frame 40A##AK291899|CXorf40A|91966|chromosome X open reading frame 40A##BC065539|CXorf40A|91966|chromosome X open reading frame 40A##BC104930|CXorf40A|91966|chromosome X open reading frame 40A##BC104932|CXorf40A|91966|chromosome X open reading frame 40A##BC143660|CXorf40A|91966|chromosome X open reading frame 40A##BC143661|CXorf40A|91966|chromosome X open reading frame 40A##BC143662|CXorf40A|91966|chromosome X open reading frame 40A	1.995253	0.0	denovo_WM_7:59:0.561	denovo_WM_7:60:0.281	denovo_WM_7:74:0.332	denovo_WM_7:75:0.612
chr1	22778131	22778293	reg1004817.p1	3.748	+	AY009398 BT020125 AB590593 AB061675 AY358947 AF316543 NM_030761 BC057781	-308701	-	TSC_hg19_v1_chr1_+_22379812 AL121737	-398407	+	NM_001039802 NM_001791 NM_044472 TSC_hg19_v1_chr1_+_22379201 BC018266 AL121734 AL121735 BC002711 AL121736 AK311375 AK316449 AK303994 AK297465 M57298	-399042	+	AK091019 AK095273 AX746732 NM_001083621 NM_014870 TSC_hg19_v1_chr1_+_22778343	132	+	TSC_hg19_v1_chr1_+_22778350 AB007947 BC114607	214	+	TSC_hg19_v1_chr1_+_22889990 BC072417 NM_001006943 NM_020526 BC038796 AB527136	111844	+	AY009398|WNT4|54361|wingless-type MMTV integration site family, member 4##BT020125|WNT4|54361|wingless-type MMTV integration site family, member 4##AB061675|WNT4|54361|wingless-type MMTV integration site family, member 4##AY358947|WNT4|54361|wingless-type MMTV integration site family, member 4##AF316543|WNT4|54361|wingless-type MMTV integration site family, member 4##NM_030761|WNT4|54361|wingless-type MMTV integration site family, member 4##BC057781|WNT4|54361|wingless-type MMTV integration site family, member 4##AL121737|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_001039802|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_001791|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##NM_044472|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC018266|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121734|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121735|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##BC002711|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AL121736|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK311375|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK316449|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK303994|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK297465|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##M57298|CDC42|998|cell division cycle 42 (GTP binding protein, 25kDa)##AK091019|ZBTB40|9923|zinc finger and BTB domain containing 40##AK095273|ZBTB40|9923|zinc finger and BTB domain containing 40##NM_001083621|ZBTB40|9923|zinc finger and BTB domain containing 40##NM_014870|ZBTB40|9923|zinc finger and BTB domain containing 40##AB007947|ZBTB40|9923|zinc finger and BTB domain containing 40##BC114607|ZBTB40|9923|zinc finger and BTB domain containing 40##BC072417|EPHA8|2046|EPH receptor A8##NM_001006943|EPHA8|2046|EPH receptor A8##NM_020526|EPHA8|2046|EPH receptor A8##BC038796|EPHA8|2046|EPH receptor A8	0.961759	0.0	denovo_WM_7:-64:0.634
chr13	31018844	31018941	reg1019971.p1	3.748	+	AK291439 TSC_hg19_v1_chr13_-_30881558 AK315724 BC000612 NM_032116	-137323	-	TSC_hg19_v1_chr13_-_30881141 AK097423 NM_001014380	-137741	-	TSC_hg19_v1_chr13_-_30424811 NM_007106	-594051	-	X12597 D63874 AB208998 BC141844 AX795278 BC003378 BC066889 TSC_hg19_v1_chr13_-_31040021 BC030981 BC067732	21101	-	AK057120 TSC_hg19_v1_chr13_-_31040071 AK310975 AK291494 AK304506 NM_002128	21166	-	CR749614 TSC_hg19_v1_chr13_-_31191650 AK122825	172735	-	AK291439|KATNAL1|84056|katanin p60 subunit A-like 1##AK315724|KATNAL1|84056|katanin p60 subunit A-like 1##BC000612|KATNAL1|84056|katanin p60 subunit A-like 1##NM_032116|KATNAL1|84056|katanin p60 subunit A-like 1##AK097423|KATNAL1|84056|katanin p60 subunit A-like 1##NM_001014380|KATNAL1|84056|katanin p60 subunit A-like 1##NM_007106|UBL3|5412|ubiquitin-like 3##X12597|HMGB1|3146|high mobility group box 1##D63874|HMGB1|3146|high mobility group box 1##AB208998|HMGB1|3146|high mobility group box 1##BC141844|HMGB1|3146|high mobility group box 1##BC003378|HMGB1|3146|high mobility group box 1##BC066889|HMGB1|3146|high mobility group box 1##BC030981|HMGB1|3146|high mobility group box 1##BC067732|HMGB1|3146|high mobility group box 1##AK057120|HMGB1|3146|high mobility group box 1##AK310975|HMGB1|3146|high mobility group box 1##AK291494|HMGB1|3146|high mobility group box 1##AK304506|HMGB1|3146|high mobility group box 1##NM_002128|HMGB1|3146|high mobility group box 1##CR749614|HMGB1|3146|high mobility group box 1##AK122825|HMGB1|3146|high mobility group box 1	0.999103	0.0	denovo_WM_7:54:0.310	denovo_WM_7:55:0.310	denovo_WM_7:56:0.310
chr14	21659890	21660020	reg1013638.p1	3.748	+	NM_001004731 BC137304 BC137305	-35753	-	TSC_hg19_v1_chr14_-_21572798 NM_001102454	-87130	-	AK056849 TSC_hg19_v1_chr14_-_21572428	-87554	-	M16342 BC108658 BX247992 BC089438 BC008364 TSC_hg19_v1_chr14_-_21737587 BC003394 BC071943 BX247961 M29063 AB209527 AK223517 BC066932 AK298906 AK312382 D28382 AK297482 AK299923 AK312338 BC103758 AK292619 BC007052 BC008423 AL833432 BC092433 AK225032 AK302213 NM_001077442 NM_001077443 NM_004500 NM_031314	77616	-	AJ417067 NM_020366	96180	+	AB464256 TSC_hg19_v1_chr14_-_21852126 BC012582 BC064561 BC073849 AK001719	192167	-	NM_001004731|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137304|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##BC137305|OR5AU1|390445|olfactory receptor, family 5, subfamily AU, member 1##NM_001102454|ZNF219|51222|zinc finger protein 219##M16342|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC108658|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247992|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC089438|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008364|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC003394|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC071943|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BX247961|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##M29063|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AB209527|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK223517|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC066932|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK298906|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##D28382|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK297482|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK299923|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK312338|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC103758|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK292619|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC007052|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC008423|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AL833432|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##BC092433|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK225032|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AK302213|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077442|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_001077443|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_004500|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##NM_031314|HNRNPC|3183|heterogeneous nuclear ribonucleoprotein C (C1/C2)##AJ417067|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##NM_020366|RPGRIP1|57096|retinitis pigmentosa GTPase regulator interacting protein 1##BC012582|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC064561|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##BC073849|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)##AK001719|SUPT16H|11198|suppressor of Ty 16 homolog (S. cerevisiae)	0.997773	0.0	
chr3	113251306	113251379	reg1003876.p2	3.748	+	NM_017699	-125	+	AY099107 BC036951 TSC_hg19_v1_chr3_-_113234023 AK057966 AL832327 AL832148 NM_144718	-17349	-	TSC_hg19_v1_chr3_-_113233690 AK296160	-17656	-	TSC_hg19_v1_chr3_-_113415490 BC043383 NM_001009899	164070	-	AK296456 TSC_hg19_v1_chr3_-_113464788	213372	-	TSC_hg19_v1_chr3_-_113465043 CR749314 AK023090 AK307184 BC012731 AK311403 AK023256	213701	-	NM_017699|SIDT1|54847|SID1 transmembrane family, member 1##AY099107|SPICE1|152185|spindle and centriole associated protein 1##BC036951|SPICE1|152185|spindle and centriole associated protein 1##AK057966|SPICE1|152185|spindle and centriole associated protein 1##AL832327|SPICE1|152185|spindle and centriole associated protein 1##AL832148|SPICE1|152185|spindle and centriole associated protein 1##NM_144718|SPICE1|152185|spindle and centriole associated protein 1##AK296160|SPICE1|152185|spindle and centriole associated protein 1##BC043383|KIAA2018|205717|KIAA2018##NM_001009899|KIAA2018|205717|KIAA2018##AK296456|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##CR749314|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023090|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK307184|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##BC012731|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit##AK023256|NAA50|80218|N(alpha)-acetyltransferase 50, NatE catalytic subunit	0.0	0.0	
chr4	153600517	153600649	reg1015761.p1	3.748	+	TSC_hg19_v1_chr4_+_153457435 AL137273 BC034819	-143150	+	BC117244 BC117246 BC143944 NM_033632 CR749305 BC014503 HQ873864 HQ873865 HQ873866 HQ873867 HQ873868 HQ873869 HQ873870 TSC_hg19_v1_chr4_-_153456430	-144289	-	NM_001013415 AY008274	-296919	-	CU687412 BC060775 TSC_hg19_v1_chr4_-_153601114 AK296694 AK309319 AK056590 NM_152680	617	-	BC037869 NM_145720	100320	-	TSC_hg19_v1_chr4_+_153701018 AK304141 AK299600 NM_001025593 NM_001025595 NM_014447	100438	+	AL137273|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC034819|DKFZP434I0714|54553|uncharacterized protein DKFZP434I0714##BC117244|FBXW7|55294|F-box and WD repeat domain containing 7##BC117246|FBXW7|55294|F-box and WD repeat domain containing 7##BC143944|FBXW7|55294|F-box and WD repeat domain containing 7##NM_033632|FBXW7|55294|F-box and WD repeat domain containing 7##CR749305|FBXW7|55294|F-box and WD repeat domain containing 7##NM_001013415|FBXW7|55294|F-box and WD repeat domain containing 7##AY008274|FBXW7|55294|F-box and WD repeat domain containing 7##BC060775|TMEM154|201799|transmembrane protein 154##AK296694|TMEM154|201799|transmembrane protein 154##AK309319|TMEM154|201799|transmembrane protein 154##AK056590|TMEM154|201799|transmembrane protein 154##NM_152680|TMEM154|201799|transmembrane protein 154##BC037869|TIGD4|201798|tigger transposable element derived 4##NM_145720|TIGD4|201798|tigger transposable element derived 4##AK304141|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##AK299600|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025593|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_001025595|ARFIP1|27236|ADP-ribosylation factor interacting protein 1##NM_014447|ARFIP1|27236|ADP-ribosylation factor interacting protein 1	1.863799	0.0	denovo_WM_7:-48:0.810	denovo_WM_7:107:0.878
chr7	43634680	43634860	reg1015750.p2	3.748	+	TSC_hg19_v1_chr7_+_43622706 NM_004760 BC047696 AB011420 BC023508	-12076	+	TSC_hg19_v1_chr7_+_43152245 AB002320 BC151227 NM_015052 AK294918	-482544	+	AB049649 NM_031903 TSC_hg19_v1_chr7_+_42971975 AK090551 AX746505 BC013147 AK313393 CU680524 AF161401	-662801	+	BC056884 TSC_hg19_v1_chr7_-_43769123 AK023053 AK293043 AK309315 BC001743 NM_018224 AK021905 AK023007 AK308911 AK001665	134324	-	TSC_hg19_v1_chr7_+_43798278 NM_000712 NM_001253823 BC005902 BC008456	163497	+	TSC_hg19_v1_chr7_+_43798283 AK291862 X93086 U34877	163546	+	NM_004760|STK17A|9263|serine/threonine kinase 17a##BC047696|STK17A|9263|serine/threonine kinase 17a##AB011420|STK17A|9263|serine/threonine kinase 17a##BC023508|STK17A|9263|serine/threonine kinase 17a##AB002320|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##BC151227|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##NM_015052|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AK294918|HECW1|23072|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1##AB049649|MRPL32|64983|mitochondrial ribosomal protein L32##NM_031903|MRPL32|64983|mitochondrial ribosomal protein L32##AK090551|MRPL32|64983|mitochondrial ribosomal protein L32##BC013147|MRPL32|64983|mitochondrial ribosomal protein L32##AK313393|MRPL32|64983|mitochondrial ribosomal protein L32##AF161401|MRPL32|64983|mitochondrial ribosomal protein L32##BC056884|C7orf44|55744|chromosome 7 open reading frame 44##AK023053|C7orf44|55744|chromosome 7 open reading frame 44##AK293043|C7orf44|55744|chromosome 7 open reading frame 44##AK309315|C7orf44|55744|chromosome 7 open reading frame 44##BC001743|C7orf44|55744|chromosome 7 open reading frame 44##NM_018224|C7orf44|55744|chromosome 7 open reading frame 44##AK021905|C7orf44|55744|chromosome 7 open reading frame 44##AK023007|C7orf44|55744|chromosome 7 open reading frame 44##AK001665|C7orf44|55744|chromosome 7 open reading frame 44##NM_000712|BLVRA|644|biliverdin reductase A##NM_001253823|BLVRA|644|biliverdin reductase A##BC005902|BLVRA|644|biliverdin reductase A##BC008456|BLVRA|644|biliverdin reductase A##AK291862|BLVRA|644|biliverdin reductase A##X93086|BLVRA|644|biliverdin reductase A##U34877|BLVRA|644|biliverdin reductase A	0.508934	0.0	
chr9	127703333	127703429	reg1016115.p1	3.748	+	TSC_hg19_v1_chr9_-_127703357 BC032853 U51587 NM_002077	-42	-	TSC_hg19_v1_chr9_-_127703273 AK302445	-120	-	TSC_hg19_v1_chr9_+_127631514 AF087842 BC000018 BC002418 HQ448697	-71849	+	AB590983 TSC_hg19_v1_chr9_-_127905808 BC104030 BC104031 BC104032 AK098024 AK093983 AX748393 NM_001144877 NM_173690	202410	-	AB385530 AF035158 BT019708 X92972 TSC_hg19_v1_chr9_-_127952023	248628	-	AK295752 TSC_hg19_v1_chr9_-_127952069 AK312332 BC006990 AK316527 AK295190 AK299087 NM_001123355 NM_001123369 NM_002721	248746	-	BC032853|GOLGA1|2800|golgin A1##U51587|GOLGA1|2800|golgin A1##NM_002077|GOLGA1|2800|golgin A1##AK302445|GOLGA1|2800|golgin A1##AF087842|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC000018|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC002418|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##HQ448697|ARPC5L|81873|actin related protein 2/3 complex, subunit 5-like##BC104030|SCAI|286205|suppressor of cancer cell invasion##BC104031|SCAI|286205|suppressor of cancer cell invasion##BC104032|SCAI|286205|suppressor of cancer cell invasion##AK098024|SCAI|286205|suppressor of cancer cell invasion##AK093983|SCAI|286205|suppressor of cancer cell invasion##NM_001144877|SCAI|286205|suppressor of cancer cell invasion##NM_173690|SCAI|286205|suppressor of cancer cell invasion##AF035158|PPP6C|5537|protein phosphatase 6, catalytic subunit##BT019708|PPP6C|5537|protein phosphatase 6, catalytic subunit##X92972|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295752|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK312332|PPP6C|5537|protein phosphatase 6, catalytic subunit##BC006990|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK316527|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK295190|PPP6C|5537|protein phosphatase 6, catalytic subunit##AK299087|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123355|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_001123369|PPP6C|5537|protein phosphatase 6, catalytic subunit##NM_002721|PPP6C|5537|protein phosphatase 6, catalytic subunit	0.0	0.0	
chr11	117206065	117206191	reg1002854.p1	3.747	+	AK302991 BC000602 TSC_hg19_v1_chr11_+_117198865 AK303067	-7297	+	TSC_hg19_v1_chr11_+_117198594 BX648682 NM_014956 BC054015	-7544	+	TSC_hg19_v1_chr11_-_117186973 AF324837 AB032975 AF201468 AF190725 BC036084 AK075049 BC065492 NM_012104 NM_138971 NM_138972 NM_138973	-19148	-	AB385430 AF304304 AF304305 TSC_hg19_v1_chr11_-_117667909 AF334384 AB032958	461725	-	TSC_hg19_v1_chr11_-_117667943 AF491813 NM_020693	461831	-	DQ786191 U50743 AF241236 AK296195 TSC_hg19_v1_chr11_-_117695460 AK096069 BC013289 NM_001680	489306	-	AK302991|CEP164|22897|centrosomal protein 164kDa##BC000602|CEP164|22897|centrosomal protein 164kDa##AK303067|CEP164|22897|centrosomal protein 164kDa##BX648682|CEP164|22897|centrosomal protein 164kDa##NM_014956|CEP164|22897|centrosomal protein 164kDa##BC054015|CEP164|22897|centrosomal protein 164kDa##AF324837|BACE1|23621|beta-site APP-cleaving enzyme 1##AB032975|BACE1|23621|beta-site APP-cleaving enzyme 1##AF201468|BACE1|23621|beta-site APP-cleaving enzyme 1##AF190725|BACE1|23621|beta-site APP-cleaving enzyme 1##BC036084|BACE1|23621|beta-site APP-cleaving enzyme 1##AK075049|BACE1|23621|beta-site APP-cleaving enzyme 1##BC065492|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_012104|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138971|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138972|BACE1|23621|beta-site APP-cleaving enzyme 1##NM_138973|BACE1|23621|beta-site APP-cleaving enzyme 1##AF304304|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF304305|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF334384|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AB032958|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##AF491813|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##NM_020693|DSCAML1|57453|Down syndrome cell adhesion molecule like 1##DQ786191|FXYD2|486|FXYD domain containing ion transport regulator 2##U50743|FXYD2|486|FXYD domain containing ion transport regulator 2##AF241236|FXYD2|486|FXYD domain containing ion transport regulator 2##AK096069|FXYD2|486|FXYD domain containing ion transport regulator 2##BC013289|FXYD2|486|FXYD domain containing ion transport regulator 2##NM_001680|FXYD2|486|FXYD domain containing ion transport regulator 2	0.0	0.0	
chr15	70174375	70174497	reg1010368.p1	3.747	+	TSC_hg19_v1_chr15_+_69745157 NM_001003 NM_213725 AK130958 AK311456 AK026579 D28366 M17886 AY303789 BC003369 BC007590 AB529036 CU678440 CR450339 CR542209	-429215	+	TSC_hg19_v1_chr15_-_69707358 AK056793	-467074	-	TSC_hg19_v1_chr15_+_69706687 AK310402 EU176620	-467690	+	BC015421 TSC_hg19_v1_chr15_-_70341948	167473	-	BC015729 TSC_hg19_v1_chr15_-_70390227 AK304459	215791	-	TSC_hg19_v1_chr15_-_70390231 BC012004 AB046767 AK315058 BC043247 NM_001105192 NM_005078 NM_020908	215807	-	NM_001003|RPLP1|6176|ribosomal protein, large, P1##NM_213725|RPLP1|6176|ribosomal protein, large, P1##AK130958|RPLP1|6176|ribosomal protein, large, P1##AK026579|RPLP1|6176|ribosomal protein, large, P1##D28366|RPLP1|6176|ribosomal protein, large, P1##M17886|RPLP1|6176|ribosomal protein, large, P1##AY303789|RPLP1|6176|ribosomal protein, large, P1##BC003369|RPLP1|6176|ribosomal protein, large, P1##BC007590|RPLP1|6176|ribosomal protein, large, P1##CR450339|RPLP1|6176|ribosomal protein, large, P1##CR542209|RPLP1|6176|ribosomal protein, large, P1##AK056793|LOC145694|145694|uncharacterized LOC145694##AK310402|KIF23|9493|kinesin family member 23##EU176620|KIF23|9493|kinesin family member 23##BC015421|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC015729|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK304459|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC012004|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AB046767|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##AK315058|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##BC043247|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_001105192|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_005078|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)##NM_020908|TLE3|7090|transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila)	0.77944	0.0	denovo_WM_7:-8:0.674
chr19	3060172	3060313	reg1012346.p1	3.747	+	AK308137 NM_001144761	-12610	-	AK293407 NM_001144762	-30631	-	CU675966 AK308608 M99436 AK312285 BC017364 AK303102 NM_003260 TSC_hg19_v1_chr19_-_3029294	-31143	-	X73358 TSC_hg19_v1_chr19_-_3061344	1055	-	X73357 TSC_hg19_v1_chr19_-_3062347 U04241 AF072902 AK314713 NM_001130 NM_198970	2040	-	TSC_hg19_v1_chr19_-_3062919 AB527754 HQ258149 BC113735 BC113737 NM_198969 AK094591	2765	-	AK308137|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_001144761|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK293407|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_001144762|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK308608|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##M99436|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK312285|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##BC017364|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##AK303102|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##NM_003260|TLE2|7089|transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)##X73358|AES|166|amino-terminal enhancer of split##X73357|AES|166|amino-terminal enhancer of split##U04241|AES|166|amino-terminal enhancer of split##AF072902|AES|166|amino-terminal enhancer of split##AK314713|AES|166|amino-terminal enhancer of split##NM_001130|AES|166|amino-terminal enhancer of split##NM_198970|AES|166|amino-terminal enhancer of split##HQ258149|AES|166|amino-terminal enhancer of split##BC113735|AES|166|amino-terminal enhancer of split##BC113737|AES|166|amino-terminal enhancer of split##NM_198969|AES|166|amino-terminal enhancer of split##AK094591|AES|166|amino-terminal enhancer of split	1.900566	0.0	denovo_WM_7:74:0.250	denovo_WM_7:82:0.229
chr5	14416383	14416457	reg1008236.p2	3.747	+	TSC_hg19_v1_chr5_+_14143450 NM_007118 AB587567 AF091395 U42390	-272748	+	AY050643 TSC_hg19_v1_chr5_-_14011873	-404550	-	AX800026 AY045575 NM_001369	-471832	-	TSC_hg19_v1_chr5_+_14488527 AK131423	72119	+	NM_019018 TSC_hg19_v1_chr5_+_14581905 AK222731	165480	+	TSC_hg19_v1_chr5_+_14581949 AK001989 BC011524 CU679940	165544	+	NM_007118|TRIO|7204|triple functional domain (PTPRF interacting)##AF091395|TRIO|7204|triple functional domain (PTPRF interacting)##U42390|TRIO|7204|triple functional domain (PTPRF interacting)##AY050643|DNAH5|1767|dynein, axonemal, heavy chain 5##AY045575|DNAH5|1767|dynein, axonemal, heavy chain 5##NM_001369|DNAH5|1767|dynein, axonemal, heavy chain 5##AK131423|TRIO|7204|triple functional domain (PTPRF interacting)##NM_019018|FAM105A|54491|family with sequence similarity 105, member A##AK222731|FAM105A|54491|family with sequence similarity 105, member A##AK001989|FAM105A|54491|family with sequence similarity 105, member A##BC011524|FAM105A|54491|family with sequence similarity 105, member A	0.815253	0.0	denovo_WM_7:-9:0.645
chr7	99724766	99724904	reg1014852.p2	3.747	+	BC031288 NM_203397	-516	+	AK300005 NM_001190415	-7364	-	AY359100 BC032339 NM_152755 AK075537 BC019903 DQ891593 EU176583	-7522	+	TSC_hg19_v1_chr7_+_99746538 NM_001008395 BC105609 BC063401 BC130553 BC130559	21720	+	TSC_hg19_v1_chr7_-_99756309 BC015722 NM_018275 BC094727 AK310170	31464	-	TSC_hg19_v1_chr7_-_99756347 AK054872	31513	-	BC031288|MBLAC1|255374|metallo-beta-lactamase domain containing 1##NM_203397|MBLAC1|255374|metallo-beta-lactamase domain containing 1##AK300005|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##NM_001190415|TAF6|6878|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa##AY359100|CNPY4|245812|canopy 4 homolog (zebrafish)##BC032339|CNPY4|245812|canopy 4 homolog (zebrafish)##NM_152755|CNPY4|245812|canopy 4 homolog (zebrafish)##AK075537|CNPY4|245812|canopy 4 homolog (zebrafish)##BC019903|CNPY4|245812|canopy 4 homolog (zebrafish)##DQ891593|CNPY4|245812|canopy 4 homolog (zebrafish)##EU176583|CNPY4|245812|canopy 4 homolog (zebrafish)##NM_001008395|C7orf59|389541|chromosome 7 open reading frame 59##BC105609|C7orf59|389541|chromosome 7 open reading frame 59##BC063401|C7orf59|389541|chromosome 7 open reading frame 59##BC130553|C7orf59|389541|chromosome 7 open reading frame 59##BC130559|C7orf59|389541|chromosome 7 open reading frame 59##BC015722|C7orf43|55262|chromosome 7 open reading frame 43##NM_018275|C7orf43|55262|chromosome 7 open reading frame 43##BC094727|C7orf43|55262|chromosome 7 open reading frame 43##AK310170|C7orf43|55262|chromosome 7 open reading frame 43##AK054872|C7orf43|55262|chromosome 7 open reading frame 43	0.0	0.0	
chrX	13676879	13676990	reg1016268.p1	3.747	+	AK291271 AK315599 NM_152634 AK294465	-5668	+	NM_001167890 NM_015507 AK075214 AK300236 AJ245671 AF193055 AF186084 AK300137 AK315018 AY358333 BC038587 AL117610 CU691592 DQ890938	-89098	+	TSC_hg19_v1_chrX_-_13397507 D28370	-279429	-	TSC_hg19_v1_chrX_+_13707246 NM_001195328 NM_004251	30307	+	TSC_hg19_v1_chrX_+_13707248 AK290505 BC017265	30359	+	AK310542 TSC_hg19_v1_chrX_-_13752740 AK313736 BC016915 BC052618 NM_001011658 NM_001128835 NM_014563	75774	-	AK291271|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK315599|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_152634|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##AK294465|TCEANC|170082|transcription elongation factor A (SII) N-terminal and central domain containing##NM_001167890|EGFL6|25975|EGF-like-domain, multiple 6##NM_015507|EGFL6|25975|EGF-like-domain, multiple 6##AK075214|EGFL6|25975|EGF-like-domain, multiple 6##AK300236|EGFL6|25975|EGF-like-domain, multiple 6##AJ245671|EGFL6|25975|EGF-like-domain, multiple 6##AF193055|EGFL6|25975|EGF-like-domain, multiple 6##AF186084|EGFL6|25975|EGF-like-domain, multiple 6##AK300137|EGFL6|25975|EGF-like-domain, multiple 6##AK315018|EGFL6|25975|EGF-like-domain, multiple 6##AY358333|EGFL6|25975|EGF-like-domain, multiple 6##BC038587|EGFL6|25975|EGF-like-domain, multiple 6##AL117610|EGFL6|25975|EGF-like-domain, multiple 6##DQ890938|EGFL6|25975|EGF-like-domain, multiple 6##NM_001195328|RAB9A|9367|RAB9A, member RAS oncogene family##NM_004251|RAB9A|9367|RAB9A, member RAS oncogene family##AK290505|RAB9A|9367|RAB9A, member RAS oncogene family##BC017265|RAB9A|9367|RAB9A, member RAS oncogene family##AK310542|TRAPPC2|6399|trafficking protein particle complex 2##AK313736|TRAPPC2|6399|trafficking protein particle complex 2##BC016915|TRAPPC2|6399|trafficking protein particle complex 2##BC052618|TRAPPC2|6399|trafficking protein particle complex 2##NM_001011658|TRAPPC2|6399|trafficking protein particle complex 2##NM_001128835|TRAPPC2|6399|trafficking protein particle complex 2##NM_014563|TRAPPC2|6399|trafficking protein particle complex 2	0.069365	0.975426	CTCF.p2:10:0.975
chr11	129201733	129201875	reg1016714.p2	3.746	+	EF127492 NM_001142685	-139712	-	AB018255 AY194287 TSC_hg19_v1_chr11_-_128894084 AB079856 NM_014715	-307743	-	NM_001195195 NM_001251964 NM_022112	-388511	-	AF031924 BC069378 NM_003658 BC111432 BC111572 AJ243512 AB527829	44077	+	TSC_hg19_v1_chr11_+_129685744 AK098106 NM_138788 AK290283 AK292058	483940	+	NM_006165 X80878	561099	-	EF127492|ARHGAP32|9743|Rho GTPase activating protein 32##NM_001142685|ARHGAP32|9743|Rho GTPase activating protein 32##AB018255|ARHGAP32|9743|Rho GTPase activating protein 32##AY194287|ARHGAP32|9743|Rho GTPase activating protein 32##AB079856|ARHGAP32|9743|Rho GTPase activating protein 32##NM_014715|ARHGAP32|9743|Rho GTPase activating protein 32##NM_001195195|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_001251964|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##NM_022112|TP53AIP1|63970|tumor protein p53 regulated apoptosis inducing protein 1##AF031924|BARX2|8538|BARX homeobox 2##BC069378|BARX2|8538|BARX homeobox 2##NM_003658|BARX2|8538|BARX homeobox 2##BC111432|BARX2|8538|BARX homeobox 2##BC111572|BARX2|8538|BARX homeobox 2##AJ243512|BARX2|8538|BARX homeobox 2##AK098106|TMEM45B|120224|transmembrane protein 45B##NM_138788|TMEM45B|120224|transmembrane protein 45B##AK290283|TMEM45B|120224|transmembrane protein 45B##AK292058|TMEM45B|120224|transmembrane protein 45B##NM_006165|NFRKB|4798|nuclear factor related to kappaB binding protein##X80878|NFRKB|4798|nuclear factor related to kappaB binding protein	0.0	0.99268	CTCF.p2:90:0.993
chr11	14345049	14345153	reg1013142.p2	3.746	+	TSC_hg19_v1_chr11_+_13984277 NM_006108 AK291780 AK074803 BC136513 BC136563 BC006262 AB051390	-360818	+	AY423606 BC017377 TSC_hg19_v1_chr11_+_13690267 AY600449	-654834	+	TSC_hg19_v1_chr11_+_13690255 AK315527 AK026381	-654848	+	AK309550 AK309683 NM_001177315 NM_001102669	34950	-	TSC_hg19_v1_chr11_-_14380730 BC013106 AK299606 AK313976 NM_012250	35576	-	AK300103 NM_001177314	40950	-	NM_006108|SPON1|10418|spondin 1, extracellular matrix protein##AK291780|SPON1|10418|spondin 1, extracellular matrix protein##AK074803|SPON1|10418|spondin 1, extracellular matrix protein##BC136513|SPON1|10418|spondin 1, extracellular matrix protein##BC136563|SPON1|10418|spondin 1, extracellular matrix protein##AB051390|SPON1|10418|spondin 1, extracellular matrix protein##AY423606|FAR1|84188|fatty acyl CoA reductase 1##BC017377|FAR1|84188|fatty acyl CoA reductase 1##AY600449|FAR1|84188|fatty acyl CoA reductase 1##AK315527|FAR1|84188|fatty acyl CoA reductase 1##AK026381|FAR1|84188|fatty acyl CoA reductase 1##AK309550|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK309683|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177315|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001102669|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##BC013106|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK299606|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK313976|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_012250|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##AK300103|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2##NM_001177314|RRAS2|22800|related RAS viral (r-ras) oncogene homolog 2	0.647385	0.0	denovo_WM_7:-35:0.515
chr11	17411306	17411486	reg1016410.p2	3.746	+	BC040617 AK301550 NM_001166290 TSC_hg19_v1_chr11_-_17410958	-486	-	BC064497 NM_000525	-1191	-	TSC_hg19_v1_chr11_+_17373346 CR749521 NM_001202439 BX537685 BC136797 BC136800	-38055	+	U63421 HM635782 TSC_hg19_v1_chr11_-_17498355 AK297560 AF087138 L78207 AB209084	86947	-	TSC_hg19_v1_chr11_-_17498427 NM_000352	87040	-	CU677569 TSC_hg19_v1_chr11_-_17565964 AK290788 AK300936 AB018687 BC016057 AF039699 AF039700 AK225614 NM_005709 NM_153676	154521	-	BC040617|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##AK301550|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_001166290|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##BC064497|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##NM_000525|KCNJ11|3767|potassium inwardly-rectifying channel, subfamily J, member 11##CR749521|B7H6|374383|B7 homolog 6##NM_001202439|B7H6|374383|B7 homolog 6##BX537685|B7H6|374383|B7 homolog 6##BC136797|B7H6|374383|B7 homolog 6##BC136800|B7H6|374383|B7 homolog 6##U63421|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##HM635782|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AK297560|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AF087138|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##L78207|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AB209084|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##NM_000352|ABCC8|6833|ATP-binding cassette, sub-family C (CFTR/MRP), member 8##AK290788|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK300936|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AB018687|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##BC016057|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AF039699|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AF039700|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##AK225614|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_005709|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)##NM_153676|USH1C|10083|Usher syndrome 1C (autosomal recessive, severe)	1.995121	0.0	denovo_WM_7:-1:0.679	denovo_WM_7:-2:0.207	denovo_WM_7:13:0.664	denovo_WM_7:14:0.229
chr14	55752292	55752388	reg1015501.p2	3.746	+	NM_152231	-13469	+	TSC_hg19_v1_chr14_+_55738114 BX248268 BC095482	-14182	+	NM_017943 AK092879 AX747787 TSC_hg19_v1_chr14_+_55738097 BC109120 BC109121	-14281	+	BC028015 AB587548 AK292810 TSC_hg19_v1_chr14_-_55878549 BC109089 BC109090 AK131251 NM_014924	126216	-	AY457923 HQ258397 NM_199047 DQ448593 BC117185 BC117159	154957	-	BX248296 TSC_hg19_v1_chr14_-_56046835 AK124927	294476	-	NM_152231|FBXO34|55030|F-box protein 34##BX248268|FBXO34|55030|F-box protein 34##BC095482|FBXO34|55030|F-box protein 34##NM_017943|FBXO34|55030|F-box protein 34##AK092879|FBXO34|55030|F-box protein 34##BC109120|FBXO34|55030|F-box protein 34##BC109121|FBXO34|55030|F-box protein 34##BC028015|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK292810|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109089|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##BC109090|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AK131251|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##NM_014924|ATG14|22863|ATG14 autophagy related 14 homolog (S. cerevisiae)##AY457923|TBPL2|387332|TATA box binding protein like 2##HQ258397|TBPL2|387332|TATA box binding protein like 2##NM_199047|TBPL2|387332|TATA box binding protein like 2##DQ448593|TBPL2|387332|TATA box binding protein like 2##BC117185|TBPL2|387332|TATA box binding protein like 2##BC117159|TBPL2|387332|TATA box binding protein like 2##BX248296|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)##AK124927|KTN1-AS1|100129075|KTN1 antisense RNA 1 (non-protein coding)	0.996163	0.0	denovo_WM_7:-54:0.900
chr15	78858359	78858447	reg1019459.p1	3.746	+	TSC_hg19_v1_chr15_+_78857888 NM_000745 BC033639 U62434 AF385586 M83712 CU689678 DQ893355 DQ896674 EU176798 Y08419	-459	+	TSC_hg19_v1_chr15_+_78832790 D28362 BC030529 AL110100 BC022445 BC093069 BC047667 D00763	-25587	+	NM_001102667 NM_001102668 NM_002789 TSC_hg19_v1_chr15_+_78832785 BC005361 AK055714 AK315526	-25638	+	AF385584 Y08418 BT006646 BT006897 CU674246 CU675253 M86383 M37981 TSC_hg19_v1_chr15_-_78913298 BC000513 BC001642 BC002996 U62432	54830	-	TSC_hg19_v1_chr15_-_78913532 BC098443 BC006114 NM_000743 NM_001166694	55169	-	TSC_hg19_v1_chr15_-_78933573 U62439 Y08416 BC096080 BC096081 BC096082 BC096083 NM_000750 U48861	75170	-	NM_000745|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##BC033639|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##U62434|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##AF385586|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##M83712|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ893355|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##DQ896674|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##EU176798|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##Y08419|CHRNA5|1138|cholinergic receptor, nicotinic, alpha 5##D28362|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC030529|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AL110100|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC022445|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC093069|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC047667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##D00763|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102667|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_001102668|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##NM_002789|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##BC005361|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK055714|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AK315526|PSMA4|5685|proteasome (prosome, macropain) subunit, alpha type, 4##AF385584|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##Y08418|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006646|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BT006897|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##M37981|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC000513|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC001642|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC002996|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##U62432|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC098443|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##BC006114|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_000743|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##NM_001166694|CHRNA3|1136|cholinergic receptor, nicotinic, alpha 3##U62439|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##Y08416|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096080|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096081|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096082|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##BC096083|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##NM_000750|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4##U48861|CHRNB4|1143|cholinergic receptor, nicotinic, beta 4	0.0	0.0	
chr16	33240733	33240913	reg1009811.p1	3.746	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	-35225	+	AL133588 NM_016212	-35844	+	AK300387 TSC_hg19_v1_chr16_+_32752635	-488187	+	AL133588 NM_016212	20691	+	AB023508 BC096733 BC098165 NM_001099687 NM_001205259 NM_001205260 NM_001205265 AK312220 CR541650	21310	+	TSC_hg19_v1_chr16_-_46655275 EU176232 EU176536 EU176544 AK292164 AK310430 AK315706 AK055931 BC030699	13414449	-	AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AK300387|LOC100289574|100289574|hect domain and RLD 2 pseudogene##AL133588|TP53TG3|24150|TP53 target 3##NM_016212|TP53TG3|24150|TP53 target 3##AB023508|TP53TG3|24150|TP53 target 3##BC096733|TP53TG3|24150|TP53 target 3##BC098165|TP53TG3|24150|TP53 target 3##NM_001099687|TP53TG3B|729355|TP53 target 3B##NM_001205259|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205260|LOC653550|653550|TP53-target gene 3 protein-like##NM_001205265|TP53TG3B|729355|TP53 target 3B##AK312220|TP53TG3|24150|TP53 target 3##CR541650|TP53TG3|24150|TP53 target 3##EU176232|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176536|SHCBP1|79801|SHC SH2-domain binding protein 1##EU176544|SHCBP1|79801|SHC SH2-domain binding protein 1##AK292164|SHCBP1|79801|SHC SH2-domain binding protein 1##AK310430|SHCBP1|79801|SHC SH2-domain binding protein 1##AK315706|SHCBP1|79801|SHC SH2-domain binding protein 1##AK055931|SHCBP1|79801|SHC SH2-domain binding protein 1##BC030699|SHCBP1|79801|SHC SH2-domain binding protein 1	0.0	0.0	
chr1	936233	936378	reg1014648.p2	3.746	+	BC012351 TSC_hg19_v1_chr1_-_935476 NM_001142467 NM_021170	-795	-	AB048791 DQ895490 TSC_hg19_v1_chr1_-_935444	-907	-	AL136730 NM_001160184 NM_032129 BC101386 BC101387 AB463180 AM393848 BC141658	-34413	+	NM_005101 TSC_hg19_v1_chr1_+_948876 M13755 BC009507	12574	+	TSC_hg19_v1_chr1_+_955499 AB191264 NM_198576	19191	+	TSC_hg19_v1_chr1_+_955536 AB385240	19238	+	BC012351|HES4|57801|hairy and enhancer of split 4 (Drosophila)##NM_001142467|HES4|57801|hairy and enhancer of split 4 (Drosophila)##NM_021170|HES4|57801|hairy and enhancer of split 4 (Drosophila)##AB048791|HES4|57801|hairy and enhancer of split 4 (Drosophila)##DQ895490|HES4|57801|hairy and enhancer of split 4 (Drosophila)##AL136730|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_001160184|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_032129|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC101386|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC101387|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##AM393848|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##BC141658|PLEKHN1|84069|pleckstrin homology domain containing, family N member 1##NM_005101|ISG15|9636|ISG15 ubiquitin-like modifier##M13755|ISG15|9636|ISG15 ubiquitin-like modifier##BC009507|ISG15|9636|ISG15 ubiquitin-like modifier##AB191264|AGRN|375790|agrin##NM_198576|AGRN|375790|agrin	0.0	0.0	
chr2	221974723	221974861	reg1012789.p2	3.746	+	AY142112 NM_005070 NM_201574 AK314083 AK309025 AK289974 AK226122 BC146656	-1482438	+	TSC_hg19_v1_chr2_+_220462589 AK295609 AK300611 AK296632 AK299894 BC034051 NM_052902 AF450267	-1512203	+	M13981 NM_002191 BC039076 BC006391 TSC_hg19_v1_chr2_+_220437031 BT006954 CU675381 DQ890602 DQ893773 M13144	-1537746	+	BC036860 BC026327 L36645 BC105000 BC105002 NM_004438 AK300772 TSC_hg19_v1_chr2_-_222437025 AK225181 AK312380	462218	-	L07483 U02309 TSC_hg19_v1_chr2_-_223159109	1184228	-	AK057009 NM_153038 BC109388	1188120	+	AY142112|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_005070|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##NM_201574|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK314083|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK309025|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK289974|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK226122|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##BC146656|SLC4A3|6508|solute carrier family 4, anion exchanger, member 3##AK295609|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK300611|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK296632|STK11IP|114790|serine/threonine kinase 11 interacting protein##AK299894|STK11IP|114790|serine/threonine kinase 11 interacting protein##BC034051|STK11IP|114790|serine/threonine kinase 11 interacting protein##NM_052902|STK11IP|114790|serine/threonine kinase 11 interacting protein##AF450267|STK11IP|114790|serine/threonine kinase 11 interacting protein##M13981|INHA|3623|inhibin, alpha##NM_002191|INHA|3623|inhibin, alpha##BC039076|INHA|3623|inhibin, alpha##BC006391|INHA|3623|inhibin, alpha##BT006954|INHA|3623|inhibin, alpha##DQ890602|INHA|3623|inhibin, alpha##DQ893773|INHA|3623|inhibin, alpha##M13144|INHA|3623|inhibin, alpha##BC026327|EPHA4|2043|EPH receptor A4##L36645|EPHA4|2043|EPH receptor A4##BC105000|EPHA4|2043|EPH receptor A4##BC105002|EPHA4|2043|EPH receptor A4##NM_004438|EPHA4|2043|EPH receptor A4##AK300772|EPHA4|2043|EPH receptor A4##AK225181|EPHA4|2043|EPH receptor A4##AK312380|EPHA4|2043|EPH receptor A4##L07483|PAX3|5077|paired box 3##U02309|PAX3|5077|paired box 3##AK057009|CCDC140|151278|coiled-coil domain containing 140##NM_153038|CCDC140|151278|coiled-coil domain containing 140##BC109388|CCDC140|151278|coiled-coil domain containing 140	0.0	0.0	
chr5	32303923	32304028	reg1012699.p2	3.746	+	TSC_hg19_v1_chr5_-_32174429 BC033725 AK057544 AK075156 NM_022130	-129544	-	TSC_hg19_v1_chr5_-_32174396 AK092604	-129585	-	TSC_hg19_v1_chr5_-_32174383 AK301588 BC012123 AK293368	-129606	-	AB385495 CU691208 TSC_hg19_v1_chr5_-_32313046 BC057393 AB051469 AY028703	9030	-	TSC_hg19_v1_chr5_-_32313095 AK000483 NM_001040446	9158	-	TSC_hg19_v1_chr5_-_32388605 AK295297	84645	-	BC033725|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK057544|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK075156|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##NM_022130|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK092604|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK301588|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##BC012123|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##AK293368|GOLPH3|64083|golgi phosphoprotein 3 (coat-protein)##BC057393|MTMR12|54545|myotubularin related protein 12##AB051469|MTMR12|54545|myotubularin related protein 12##AY028703|MTMR12|54545|myotubularin related protein 12##AK000483|MTMR12|54545|myotubularin related protein 12##NM_001040446|MTMR12|54545|myotubularin related protein 12##AK295297|ZFR|51663|zinc finger RNA binding protein	0.998433	0.0	
chr1	28499627	28499792	reg1001411.p2	3.745	+	TSC_hg19_v1_chr1_-_28415116 BC041667 AK289805 BC029500 BX648945 AK295745 AK303664 AK298129 DQ426872 NM_001990	-84585	-	TSC_hg19_v1_chr1_+_28286505 AK026024 NM_018053 BC013379 BC028564 AY534246	-213191	+	NM_001009568 NM_014474 AK301349 AK293566 AK316500 TSC_hg19_v1_chr1_+_28261539 BC014444 Y08134 AK293489	-238148	+	NM_000952 NM_001164723	3745	-	S52624 AK292053 NM_001164721 NM_001164722	20703	-	TSC_hg19_v1_chr1_-_28559538 BC033159 AK300797 AF083190 BX538122 CR456900 NM_014280	59822	-	BC041667|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK289805|EYA3|2140|eyes absent homolog 3 (Drosophila)##BC029500|EYA3|2140|eyes absent homolog 3 (Drosophila)##BX648945|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK295745|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK303664|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK298129|EYA3|2140|eyes absent homolog 3 (Drosophila)##DQ426872|EYA3|2140|eyes absent homolog 3 (Drosophila)##NM_001990|EYA3|2140|eyes absent homolog 3 (Drosophila)##AK026024|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_018053|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC013379|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##BC028564|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##AY534246|XKR8|55113|XK, Kell blood group complex subunit-related family, member 8##NM_001009568|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_014474|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK301349|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293566|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK316500|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##BC014444|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##Y08134|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##AK293489|SMPDL3B|27293|sphingomyelin phosphodiesterase, acid-like 3B##NM_000952|PTAFR|5724|platelet-activating factor receptor##NM_001164723|PTAFR|5724|platelet-activating factor receptor##S52624|PTAFR|5724|platelet-activating factor receptor##AK292053|PTAFR|5724|platelet-activating factor receptor##NM_001164721|PTAFR|5724|platelet-activating factor receptor##NM_001164722|PTAFR|5724|platelet-activating factor receptor##BC033159|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AK300797|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##AF083190|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##BX538122|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##CR456900|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8##NM_014280|DNAJC8|22826|DnaJ (Hsp40) homolog, subfamily C, member 8	0.999414	0.0	
chr1	32994707	32994791	reg1017692.p1	3.745	+	TSC_hg19_v1_chr1_+_32930659 AK092326 AX747483 NM_001145720	-64097	+	CR457252 TSC_hg19_v1_chr1_-_32860030 BC010573 CR749228 BX641056 AK300231 BC026322 AK297604 AK300306 AK001138 AK225717 AK293454 BC028381 AK021440 AK297352 AK225026 AK304477 AK316172 NM_001143888 NM_001143889 NM_001143890 NM_018045	-134712	-	NM_001167676	-166906	-	NM_001040441	10022	+	TSC_hg19_v1_chr1_+_33005058 AK074546 AY157873 BC015239	10295	+	AY099494 TSC_hg19_v1_chr1_-_33116147 BC058843 AY158005 AY099493 AY151084 AY151085 NM_178547	121388	-	NM_001145720|ZBTB8B|728116|zinc finger and BTB domain containing 8B##CR457252|BSDC1|55108|BSD domain containing 1##BC010573|BSDC1|55108|BSD domain containing 1##CR749228|BSDC1|55108|BSD domain containing 1##BX641056|BSDC1|55108|BSD domain containing 1##AK300231|BSDC1|55108|BSD domain containing 1##BC026322|BSDC1|55108|BSD domain containing 1##AK297604|BSDC1|55108|BSD domain containing 1##AK300306|BSDC1|55108|BSD domain containing 1##AK001138|BSDC1|55108|BSD domain containing 1##AK225717|BSDC1|55108|BSD domain containing 1##AK293454|BSDC1|55108|BSD domain containing 1##BC028381|BSDC1|55108|BSD domain containing 1##AK021440|BSDC1|55108|BSD domain containing 1##AK297352|BSDC1|55108|BSD domain containing 1##AK225026|BSDC1|55108|BSD domain containing 1##AK304477|BSDC1|55108|BSD domain containing 1##AK316172|BSDC1|55108|BSD domain containing 1##NM_001143888|BSDC1|55108|BSD domain containing 1##NM_001143889|BSDC1|55108|BSD domain containing 1##NM_001143890|BSDC1|55108|BSD domain containing 1##NM_018045|BSDC1|55108|BSD domain containing 1##NM_001167676|LOC100128071|100128071|uncharacterized LOC100128071##NM_001040441|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AK074546|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY157873|ZBTB8A|653121|zinc finger and BTB domain containing 8A##BC015239|ZBTB8A|653121|zinc finger and BTB domain containing 8A##AY099494|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##BC058843|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY158005|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY099493|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151084|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##AY151085|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand##NM_178547|ZBTB8OS|339487|zinc finger and BTB domain containing 8 opposite strand	0.990147	0.0	denovo_WM_7:-105:0.968
chr14	34550616	34550687	reg1010901.p2	3.745	+	AB528983 BC102030 BC105938 BC105939 TSC_hg19_v1_chr14_-_34420283 BC010992 BC064924 BC111057 AJ310545 AK025273 AK123350 AK225473 AK296216 NM_022073	-130502	-	AF164438 AY157302 NM_001164749 NM_001165893 NM_022123 NM_173159 AB054575 AB054576 AB055962 AB463928	-1142161	+	NM_004274 U17195 AB002309 BC150288 BC150185 BC154413 TSC_hg19_v1_chr14_+_32798554 BC137232 BC137233	-1752115	+	AB590824 TSC_hg19_v1_chr14_-_34931447 AK315409 AL080066 BC016805 BC016808 BC021701 AK001993 NM_138288 BC068480	380836	-	TSC_hg19_v1_chr14_-_35008908 AB528732 AY869694 AK225467 AK000585 AK225477 AK225991 BC001245 AF217512 AY157300 AY157301 NM_018453	458234	-	TSC_hg19_v1_chr14_-_35099347 BC001798 NM_021249 U83194 AF121856 AK292250 AB527564 AK308464 AK296213 NM_152233	548704	-	BC102030|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105938|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC105939|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC010992|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC064924|EGLN3|112399|egl nine homolog 3 (C. elegans)##BC111057|EGLN3|112399|egl nine homolog 3 (C. elegans)##AJ310545|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK025273|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK123350|EGLN3|112399|egl nine homolog 3 (C. elegans)##AK225473|EGLN3|112399|egl nine homolog 3 (C. elegans)##NM_022073|EGLN3|112399|egl nine homolog 3 (C. elegans)##AF164438|NPAS3|64067|neuronal PAS domain protein 3##AY157302|NPAS3|64067|neuronal PAS domain protein 3##NM_001164749|NPAS3|64067|neuronal PAS domain protein 3##NM_001165893|NPAS3|64067|neuronal PAS domain protein 3##NM_022123|NPAS3|64067|neuronal PAS domain protein 3##NM_173159|NPAS3|64067|neuronal PAS domain protein 3##AB054575|NPAS3|64067|neuronal PAS domain protein 3##AB054576|NPAS3|64067|neuronal PAS domain protein 3##AB055962|NPAS3|64067|neuronal PAS domain protein 3##NM_004274|AKAP6|9472|A kinase (PRKA) anchor protein 6##U17195|AKAP6|9472|A kinase (PRKA) anchor protein 6##AB002309|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150288|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC150185|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC154413|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137232|AKAP6|9472|A kinase (PRKA) anchor protein 6##BC137233|AKAP6|9472|A kinase (PRKA) anchor protein 6##AK315409|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AL080066|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016805|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC016808|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC021701|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AK001993|SPTSSA|171546|serine palmitoyltransferase, small subunit A##NM_138288|SPTSSA|171546|serine palmitoyltransferase, small subunit A##BC068480|SPTSSA|171546|serine palmitoyltransferase, small subunit A##AY869694|EAPP|55837|E2F-associated phosphoprotein##AK225467|EAPP|55837|E2F-associated phosphoprotein##AK000585|EAPP|55837|E2F-associated phosphoprotein##AK225477|EAPP|55837|E2F-associated phosphoprotein##AK225991|EAPP|55837|E2F-associated phosphoprotein##BC001245|EAPP|55837|E2F-associated phosphoprotein##AF217512|EAPP|55837|E2F-associated phosphoprotein##AY157300|EAPP|55837|E2F-associated phosphoprotein##AY157301|EAPP|55837|E2F-associated phosphoprotein##NM_018453|EAPP|55837|E2F-associated phosphoprotein##BC001798|SNX6|58533|sorting nexin 6##NM_021249|SNX6|58533|sorting nexin 6##U83194|SNX6|58533|sorting nexin 6##AF121856|SNX6|58533|sorting nexin 6##AK292250|SNX6|58533|sorting nexin 6##AK308464|SNX6|58533|sorting nexin 6##AK296213|SNX6|58533|sorting nexin 6##NM_152233|SNX6|58533|sorting nexin 6	0.0	0.0	
chr1	72037924	72038055	reg1015846.p2	3.745	+	NM_005455 NM_203350	-491018	-	CU691764 EU446929 AB209568 TSC_hg19_v1_chr1_-_71546719 AL136945 AK222858 BC010962 AF065391 AF065392 BC033648 BC039814	-491282	-	AB451481 AY387856 AY429108 CU692894 BC118578 BC118659 U13214 U13215 U13216 U13217 U13218 AK290634 L26976 AK315825 L27490 S69326 X83857 X83858 X83859 X83860 X83861 X83862 X83863 L27488 L27489 S69200 D38297 D38298 D38299 D38300 D38301 D86097 D86098 NM_001126044 NM_198714 NM_198715 NM_198716 NM_198717 NM_198718 NM_198719 TSC_hg19_v1_chr1_-_71513500 BC024229	-524610	-	TSC_hg19_v1_chr1_-_72748182 AK295481 BX538014 AK092307 AX747470 NM_173808	710222	-	TSC_hg19_v1_chr1_-_72748491 AY358132	710516	-	AK131476 BC020778 BX647210 TSC_hg19_v1_chr1_-_74663861 NM_001105659	2625859	-	NM_005455|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##NM_203350|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##EU446929|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AB209568|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AL136945|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AK222858|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC010962|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AF065391|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AF065392|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC033648|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##BC039814|ZRANB2|9406|zinc finger, RAN-binding domain containing 2##AB451481|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AY387856|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AY429108|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC118578|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC118659|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13214|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13215|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13216|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13217|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##U13218|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK290634|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L26976|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK315825|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27490|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##S69326|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83857|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83858|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83859|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83860|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83861|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83862|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##X83863|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27488|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##L27489|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##S69200|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38297|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38298|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38299|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38300|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D38301|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D86097|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##D86098|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_001126044|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198714|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198715|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198716|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198717|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198718|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##NM_198719|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##BC024229|PTGER3|5733|prostaglandin E receptor 3 (subtype EP3)##AK295481|NEGR1|257194|neuronal growth regulator 1##BX538014|NEGR1|257194|neuronal growth regulator 1##AK092307|NEGR1|257194|neuronal growth regulator 1##NM_173808|NEGR1|257194|neuronal growth regulator 1##AK131476|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3##BC020778|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3##BX647210|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3##NM_001105659|LRRIQ3|127255|leucine-rich repeats and IQ motif containing 3	0.0	0.0	
chr20	32320904	32321076	reg1009465.p1	3.745	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-1194	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-12976	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-46793	-	TSC_hg19_v1_chr20_+_32399127 NM_176812	78096	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	78230	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	260489	+	BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.997688	0.0	denovo_WM_7:42:0.238	denovo_WM_7:43:0.238	denovo_WM_7:44:0.238	denovo_WM_7:45:0.238
chr21	10163664	10163796	reg1012538.p2	3.745	+	None	None	None	None	None	None	None	None	None	AK308254 AK314285 TSC_hg19_v1_chr21_-_10990898 AF007118 AF495908 AY219886 AY219887 AY219888 AL833345 BC028719 NM_199259 NM_199260 NM_199261	827168	-	BC101132 BC101133 BC101134 BC107038 BC107039 BC113810 AF218570 AF339514 AF339515 AF339516 NM_181704 NM_182481 NM_182482 NM_182484 AF527550 AF527551 AF527553 NM_001187 U19180 BC017024 TSC_hg19_v1_chr21_-_11098961 AK292540 BC064647	935169	-	AY172978 NM_174981 AY465173	4818769	+	AK308254|TPTE|7179|transmembrane phosphatase with tensin homology##AK314285|TPTE|7179|transmembrane phosphatase with tensin homology##AF007118|TPTE|7179|transmembrane phosphatase with tensin homology##AF495908|TPTE|7179|transmembrane phosphatase with tensin homology##AY219886|TPTE|7179|transmembrane phosphatase with tensin homology##AY219887|TPTE|7179|transmembrane phosphatase with tensin homology##AY219888|TPTE|7179|transmembrane phosphatase with tensin homology##AL833345|TPTE|7179|transmembrane phosphatase with tensin homology##BC028719|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199259|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199260|TPTE|7179|transmembrane phosphatase with tensin homology##NM_199261|TPTE|7179|transmembrane phosphatase with tensin homology##BC101132|BAGE2|85319|B melanoma antigen family, member 2##BC101133|BAGE2|85319|B melanoma antigen family, member 2##BC101134|BAGE3|85318|B melanoma antigen family, member 3##BC107038|BAGE|574|B melanoma antigen##BC107039|BAGE|574|B melanoma antigen##BC113810|BAGE|574|B melanoma antigen##AF218570|BAGE2|85319|B melanoma antigen family, member 2##AF339514|BAGE3|85318|B melanoma antigen family, member 3##AF339515|BAGE4|85317|B melanoma antigen family, member 4##AF339516|BAGE5|85316|B melanoma antigen family, member 5##NM_181704|BAGE4|85317|B melanoma antigen family, member 4##NM_182481|BAGE3|85318|B melanoma antigen family, member 3##NM_182482|BAGE2|85319|B melanoma antigen family, member 2##NM_182484|BAGE5|85316|B melanoma antigen family, member 5##AF527550|BAGE|574|B melanoma antigen##AF527551|BAGE|574|B melanoma antigen##AF527553|BAGE|574|B melanoma antigen##NM_001187|BAGE|574|B melanoma antigen##U19180|BAGE|574|B melanoma antigen##AK292540|BAGE2|85319|B melanoma antigen family, member 2##AY172978|POTED|317754|POTE ankyrin domain family, member D##NM_174981|POTED|317754|POTE ankyrin domain family, member D##AY465173|POTEB|339010|POTE ankyrin domain family, member B	0.0	0.0	
chr22	39377360	39377487	reg1012175.p1	3.745	+	NM_001193289 NM_145699 U03891 BC126416 BC144146 CR456393 AB528063 CU012950 CU013238 HQ258100	-23813	+	TSC_hg19_v1_chr22_-_39268255 AK094829 NM_014292	-109119	-	TSC_hg19_v1_chr22_-_39268222 BC012111 AK293035	-109202	-	AK024854 NM_004900 U61084 CT841510 AB527109 AB528064 AB528855 CU012951 CU012954 CU013239 CU013242 CU691044 AY743217 EU527884	1008	+	TSC_hg19_v1_chr22_+_39410261 AK313272 AF165520 BC011739 NM_014508 BC021080	32828	+	CR456394 TSC_hg19_v1_chr22_+_39410295 AB208979 AB590057 CU012952 CU013240	32903	+	NM_001193289|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##NM_145699|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##U03891|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC126416|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##BC144146|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CR456393|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU012950|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##CU013238|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##HQ258100|APOBEC3A|200315|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A##AK094829|CBX6|23466|chromobox homolog 6##NM_014292|CBX6|23466|chromobox homolog 6##BC012111|CBX6|23466|chromobox homolog 6##AK293035|CBX6|23466|chromobox homolog 6##AK024854|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##NM_004900|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##U61084|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CT841510|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012951|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU012954|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##CU013239|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##CU013242|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AY743217|APOBEC3B|9582|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B##EU527884|APOBEC3D|140564|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D##AK313272|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AF165520|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC011739|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##NM_014508|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##BC021080|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CR456394|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##AB208979|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU012952|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C##CU013240|APOBEC3C|27350|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C	0.993014	0.0	denovo_WM_7:-33:0.441	denovo_WM_7:-34:0.378
chrX	12984271	12984380	reg1019403.p2	3.745	+	AK314240 NM_138636 AF246971 AY358296 BC101074 BC101075 BC101076 BC101077 AF245703	-59568	+	AK313858 BC033651 NM_016562 AF240467 AF245702	-99127	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	-174757	+	BC107789 NM_021109 M17733 AK055976 AK057827 AK311747 BC016732 BC022857 BC062436 BC070248 BC070249 BC083509 BC092437 BC104666 BC061586 BC151215 BC139925 BC101790 BC101792 BC001631 BC064954 BC128103 BC141975 BC141976 BC128102	8915	+	TSC_hg19_v1_chrX_+_12994293 BC104464 BC104465 BT007090 X02493	10018	+	BX647580 AK313776 AF494345 BX648111 BX648919 NM_174901	78493	-	AK314240|TLR8|51311|toll-like receptor 8##NM_138636|TLR8|51311|toll-like receptor 8##AF246971|TLR8|51311|toll-like receptor 8##AY358296|TLR8|51311|toll-like receptor 8##BC101074|TLR8|51311|toll-like receptor 8##BC101075|TLR8|51311|toll-like receptor 8##BC101076|TLR8|51311|toll-like receptor 8##BC101077|TLR8|51311|toll-like receptor 8##AF245703|TLR8|51311|toll-like receptor 8##AK313858|TLR7|51284|toll-like receptor 7##BC033651|TLR7|51284|toll-like receptor 7##NM_016562|TLR7|51284|toll-like receptor 7##AF240467|TLR7|51284|toll-like receptor 7##AF245702|TLR7|51284|toll-like receptor 7##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC107789|TMSB4X|7114|thymosin beta 4, X-linked##NM_021109|TMSB4X|7114|thymosin beta 4, X-linked##M17733|TMSB4X|7114|thymosin beta 4, X-linked##AK055976|TMSB4X|7114|thymosin beta 4, X-linked##AK057827|TMSB4X|7114|thymosin beta 4, X-linked##AK311747|TMSB4X|7114|thymosin beta 4, X-linked##BC016732|TMSB4X|7114|thymosin beta 4, X-linked##BC022857|TMSB4X|7114|thymosin beta 4, X-linked##BC062436|TMSB4X|7114|thymosin beta 4, X-linked##BC070248|TMSB4X|7114|thymosin beta 4, X-linked##BC070249|TMSB4X|7114|thymosin beta 4, X-linked##BC083509|TMSB4X|7114|thymosin beta 4, X-linked##BC092437|TMSB4X|7114|thymosin beta 4, X-linked##BC104666|TMSB4X|7114|thymosin beta 4, X-linked##BC061586|TMSB4X|7114|thymosin beta 4, X-linked##BC151215|TMSB4X|7114|thymosin beta 4, X-linked##BC139925|TMSB4X|7114|thymosin beta 4, X-linked##BC101790|TMSB4X|7114|thymosin beta 4, X-linked##BC101792|TMSB4X|7114|thymosin beta 4, X-linked##BC001631|TMSB4X|7114|thymosin beta 4, X-linked##BC064954|TMSB4X|7114|thymosin beta 4, X-linked##BC128103|TMSB4X|7114|thymosin beta 4, X-linked##BC141975|TMSB4X|7114|thymosin beta 4, X-linked##BC141976|TMSB4X|7114|thymosin beta 4, X-linked##BC128102|TMSB4X|7114|thymosin beta 4, X-linked##BC104464|TMSB4X|7114|thymosin beta 4, X-linked##BC104465|TMSB4X|7114|thymosin beta 4, X-linked##BT007090|TMSB4X|7114|thymosin beta 4, X-linked##X02493|TMSB4X|7114|thymosin beta 4, X-linked##BX647580|FAM9C|171484|family with sequence similarity 9, member C##AK313776|FAM9C|171484|family with sequence similarity 9, member C##AF494345|FAM9C|171484|family with sequence similarity 9, member C##BX648111|FAM9C|171484|family with sequence similarity 9, member C##BX648919|FAM9C|171484|family with sequence similarity 9, member C##NM_174901|FAM9C|171484|family with sequence similarity 9, member C	1.489561	0.0	denovo_WM_7:-88:0.493
chr11	62607917	62607983	reg1017143.p2	3.744	+	AK001301 NM_018093	-323	-	TSC_hg19_v1_chr11_-_62607063 CU675359 AK303186 AY500828 BC006351	-885	-	TSC_hg19_v1_chr11_-_62599524 AK296675 AK313497 BC012137 BX537426 NM_001244666 NM_003164	-8348	-	BC000839 BC027980 BC011809 BC017253 BC063571 TSC_hg19_v1_chr11_-_62623358 AK095849	15335	-	TSC_hg19_v1_chr11_+_62623580 NM_001012662 NM_001012664 NM_002394 BC001061 AK025584 BC003000	15600	+	TSC_hg19_v1_chr11_+_62648367 NM_001013251 AK304685 AK090758 AX746603 J03569 AK304497 AB018010 J02939 AK225304 J02769 EU832612 EU832683	40557	+	AK001301|WDR74|54663|WD repeat domain 74##NM_018093|WDR74|54663|WD repeat domain 74##AK303186|WDR74|54663|WD repeat domain 74##AY500828|WDR74|54663|WD repeat domain 74##BC006351|WDR74|54663|WD repeat domain 74##AK296675|STX5|6811|syntaxin 5##AK313497|STX5|6811|syntaxin 5##BC012137|STX5|6811|syntaxin 5##BX537426|STX5|6811|syntaxin 5##NM_001244666|STX5|6811|syntaxin 5##NM_003164|STX5|6811|syntaxin 5##BC000839|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC027980|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC011809|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC017253|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC063571|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK095849|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##NM_001012662|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_001012664|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_002394|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC001061|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK025584|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC003000|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_001013251|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304685|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK090758|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J03569|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304497|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AB018010|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02939|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK225304|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02769|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832612|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832683|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	0.996198	0.0	denovo_WM_7:8:0.548	denovo_WM_7:11:0.347
chr1	226163767	226163932	reg1017821.p1	3.744	+	U81523 BC116448 AF081513 BC035718 AK027520 AK075344 TSC_hg19_v1_chr1_-_226128921 AK304549 NM_001172425 NM_003240 BC065929	-34818	-	AK001508 AK298845 TSC_hg19_v1_chr1_-_226111979	-51870	-	BC014868 TSC_hg19_v1_chr1_-_226111970 AF087859 BC020553 NM_013328	-51898	-	BC016290 TSC_hg19_v1_chr1_-_226187017	23153	-	TSC_hg19_v1_chr1_-_226187023 AK092701 AX747679 BX648319	23173	-	TSC_hg19_v1_chr1_-_226187045 AK291008 AK127780 BC071563 AK308441	23187	-	U81523|LEFTY2|7044|left-right determination factor 2##AF081513|LEFTY2|7044|left-right determination factor 2##BC035718|LEFTY2|7044|left-right determination factor 2##AK027520|LEFTY2|7044|left-right determination factor 2##AK075344|LEFTY2|7044|left-right determination factor 2##AK304549|LEFTY2|7044|left-right determination factor 2##NM_001172425|LEFTY2|7044|left-right determination factor 2##NM_003240|LEFTY2|7044|left-right determination factor 2##BC065929|LEFTY2|7044|left-right determination factor 2##AK001508|PYCR2|29920|pyrroline-5-carboxylate reductase family, member 2##BC014868|PYCR2|29920|pyrroline-5-carboxylate reductase family, member 2##AF087859|PYCR2|29920|pyrroline-5-carboxylate reductase family, member 2##BC020553|PYCR2|29920|pyrroline-5-carboxylate reductase family, member 2##NM_013328|PYCR2|29920|pyrroline-5-carboxylate reductase family, member 2##BC016290|C1orf55|163859|chromosome 1 open reading frame 55##AK092701|C1orf55|163859|chromosome 1 open reading frame 55##BX648319|C1orf55|163859|chromosome 1 open reading frame 55##AK291008|C1orf55|163859|chromosome 1 open reading frame 55##AK127780|C1orf55|163859|chromosome 1 open reading frame 55##BC071563|C1orf55|163859|chromosome 1 open reading frame 55##AK308441|C1orf55|163859|chromosome 1 open reading frame 55	0.0	0.99641	CTCF.p2:15:0.996
chr13	25302043	25302223	reg1000354.p1	3.744	+	AK292968 NM_001185085 NM_001676	-47585	+	TSC_hg19_v1_chr13_-_25086917 BC017815 AF057160 AK304399 AF158255 NM_006437	-215222	-	BC040438 NM_178540 AY358145	-418416	+	BC037275 NM_001184993 NM_031277 BC146822 AK302405 AK302435 BC048962 AF285602 AF285603	36186	+	BC113662 BC113664 BC143757 BC143758 TSC_hg19_v1_chr13_-_25497000 BC113110 BC113111 AL833182 BC092467 AF139625 AK292406	194836	-	TSC_hg19_v1_chr13_-_25497054 NM_018451	194936	-	AK292968|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001185085|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##NM_001676|ATP12A|479|ATPase, H+/K+ transporting, nongastric, alpha polypeptide##BC017815|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF057160|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AK304399|PARP4|143|poly (ADP-ribose) polymerase family, member 4##AF158255|PARP4|143|poly (ADP-ribose) polymerase family, member 4##NM_006437|PARP4|143|poly (ADP-ribose) polymerase family, member 4##BC040438|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##NM_178540|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##AY358145|C1QTNF9|338872|C1q and tumor necrosis factor related protein 9##BC037275|RNF17|56163|ring finger protein 17##NM_001184993|RNF17|56163|ring finger protein 17##NM_031277|RNF17|56163|ring finger protein 17##BC146822|RNF17|56163|ring finger protein 17##AK302405|RNF17|56163|ring finger protein 17##AK302435|RNF17|56163|ring finger protein 17##AF285602|RNF17|56163|ring finger protein 17##AF285603|RNF17|56163|ring finger protein 17##BC113662|CENPJ|55835|centromere protein J##BC113664|CENPJ|55835|centromere protein J##BC143757|CENPJ|55835|centromere protein J##BC143758|CENPJ|55835|centromere protein J##BC113110|CENPJ|55835|centromere protein J##BC113111|CENPJ|55835|centromere protein J##AL833182|CENPJ|55835|centromere protein J##BC092467|CENPJ|55835|centromere protein J##AF139625|CENPJ|55835|centromere protein J##AK292406|CENPJ|55835|centromere protein J##NM_018451|CENPJ|55835|centromere protein J	0.0	0.0	
chr14	25445998	25446111	reg1018099.p1	3.744	+	AB590431 AY232655 AY232656 EU176524 M17016 AY232654 J04071 BC030195 J03189 NM_004131 AY372494	-342636	-	AB590301 CU693356 DQ892068 DQ895261 M36118 BC027974 NM_033423 AY232658 TSC_hg19_v1_chr14_-_25078880 AY232657	-367193	-	AB590242 CR456807 CR541704 DQ893067 DQ896320 M16117 TSC_hg19_v1_chr14_-_25045457 AK225914 BC014460 NM_001911	-400608	-	TSC_hg19_v1_chr14_-_25519354 BC067278 NM_014178 AK096957 AL834346 BC009499	73184	-	NM_002515 NM_006489 NM_006491 TSC_hg19_v1_chr14_-_27067013	1620934	-	TSC_hg19_v1_chr14_+_29236171 X74142 X74143 NM_005249	3790174	+	AY232655|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232656|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##EU176524|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##M17016|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY232654|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J04071|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##BC030195|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##J03189|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##NM_004131|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##AY372494|GZMB|3002|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)##DQ892068|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##DQ895261|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##M36118|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##BC027974|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##NM_033423|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232658|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##AY232657|GZMH|2999|granzyme H (cathepsin G-like 2, protein h-CCPX)##CR456807|CTSG|1511|cathepsin G##CR541704|CTSG|1511|cathepsin G##DQ893067|CTSG|1511|cathepsin G##DQ896320|CTSG|1511|cathepsin G##M16117|CTSG|1511|cathepsin G##AK225914|CTSG|1511|cathepsin G##BC014460|CTSG|1511|cathepsin G##NM_001911|CTSG|1511|cathepsin G##BC067278|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_014178|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AK096957|STXBP6|29091|syntaxin binding protein 6 (amisyn)##AL834346|STXBP6|29091|syntaxin binding protein 6 (amisyn)##BC009499|STXBP6|29091|syntaxin binding protein 6 (amisyn)##NM_002515|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006489|NOVA1|4857|neuro-oncological ventral antigen 1##NM_006491|NOVA1|4857|neuro-oncological ventral antigen 1##X74142|FOXG1|2290|forkhead box G1##X74143|FOXG1|2290|forkhead box G1##NM_005249|FOXG1|2290|forkhead box G1	1.98048	0.0	denovo_WM_7:10:0.951	denovo_WM_7:25:0.959
chr1	46777727	46777793	reg1016589.p2	3.744	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-8373	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-8712	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-8743	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	28683	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	82216	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	194912	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.997744	0.0	denovo_WM_7:14:0.880
chr17	16428332	16428489	reg1018721.p2	3.744	+	NM_001113567 NM_207387 TSC_hg19_v1_chr17_-_16395510	-32903	-	TSC_hg19_v1_chr17_-_16395091 AK093015 AX747857 BC144381	-33257	-	TSC_hg19_v1_chr17_+_16342350 AK098643 AK307982 AK308482 AK309961 BX538291 AK311247 BC027986 BC040159	-86050	+	AF217227 TSC_hg19_v1_chr17_-_16472519 BC041159 BC057791 NM_020653	44086	-	AK131401 NM_020787	128751	-	TSC_hg19_v1_chr17_+_16593572 EF553518 BC133019 BC144224 BC144225 NM_014695	165194	+	NM_001113567|FAM211A|388341|family with sequence similarity 211, member A##NM_207387|FAM211A|388341|family with sequence similarity 211, member A##AK093015|FAM211A|388341|family with sequence similarity 211, member A##BC144381|FAM211A|388341|family with sequence similarity 211, member A##AK098643|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##AK307982|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##AK308482|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##AK309961|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##BX538291|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##AK311247|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##BC027986|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##BC040159|C17orf76-AS1|125144|C17orf76 antisense RNA 1 (non-protein coding)##AF217227|ZNF287|57336|zinc finger protein 287##BC041159|ZNF287|57336|zinc finger protein 287##BC057791|ZNF287|57336|zinc finger protein 287##NM_020653|ZNF287|57336|zinc finger protein 287##AK131401|ZNF624|57547|zinc finger protein 624##NM_020787|ZNF624|57547|zinc finger protein 624##EF553518|CCDC144B|284047|coiled-coil domain containing 144B (pseudogene)##BC133019|CCDC144A|9720|coiled-coil domain containing 144A##BC144224|CCDC144A|9720|coiled-coil domain containing 144A##BC144225|CCDC144A|9720|coiled-coil domain containing 144A##NM_014695|CCDC144A|9720|coiled-coil domain containing 144A	0.0	0.0	
chr17	28973562	28973685	reg1015227.p2	3.744	+	BC096718 BC098126 BC098273 NM_015594	-87040	+	TSC_hg19_v1_chr17_+_28804434 AK000606 AK291381 NM_001007024 NM_001007025 NM_004871 AK298714 AF047438 BC012620 AF073926 BC040471	-169190	+	AK316409 NM_001199775 AK302878	-266108	+	TSC_hg19_v1_chr17_+_29058664 BC047718	85065	+	TSC_hg19_v1_chr17_-_29151711 DQ298450 DQ892276 CU692798 AK296238 AF046059 BC023567	178052	-	TSC_hg19_v1_chr17_-_29151725 AK313315 NM_015986	178140	-	BC096718|TBC1D29|26083|TBC1 domain family, member 29##BC098126|TBC1D29|26083|TBC1 domain family, member 29##BC098273|TBC1D29|26083|TBC1 domain family, member 29##NM_015594|TBC1D29|26083|TBC1 domain family, member 29##AK000606|GOSR1|9527|golgi SNAP receptor complex member 1##AK291381|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007024|GOSR1|9527|golgi SNAP receptor complex member 1##NM_001007025|GOSR1|9527|golgi SNAP receptor complex member 1##NM_004871|GOSR1|9527|golgi SNAP receptor complex member 1##AK298714|GOSR1|9527|golgi SNAP receptor complex member 1##AF047438|GOSR1|9527|golgi SNAP receptor complex member 1##BC012620|GOSR1|9527|golgi SNAP receptor complex member 1##AF073926|GOSR1|9527|golgi SNAP receptor complex member 1##BC040471|GOSR1|9527|golgi SNAP receptor complex member 1##AK316409|CPD|1362|carboxypeptidase D##NM_001199775|CPD|1362|carboxypeptidase D##AK302878|CPD|1362|carboxypeptidase D##BC047718|SUZ12P|440423|suppressor of zeste 12 homolog pseudogene##DQ298450|CRLF3|51379|cytokine receptor-like factor 3##DQ892276|CRLF3|51379|cytokine receptor-like factor 3##AK296238|CRLF3|51379|cytokine receptor-like factor 3##AF046059|CRLF3|51379|cytokine receptor-like factor 3##BC023567|CRLF3|51379|cytokine receptor-like factor 3##AK313315|CRLF3|51379|cytokine receptor-like factor 3##NM_015986|CRLF3|51379|cytokine receptor-like factor 3	0.0	0.0	
chr20	22108724	22108866	reg1014715.p1	3.744	+	TSC_hg19_v1_chr20_+_21686519 BC143791 BC143793	-422262	+	TSC_hg19_v1_chr20_+_21686296 NM_006192	-422501	+	NM_002509	-614132	-	BC006545 BC019288 AB464525 DQ892883 DQ896132 TSC_hg19_v1_chr20_-_22564902 AK301611 BC011780	456121	-	TSC_hg19_v1_chr20_-_22565060 NM_021784	456280	-	AB028021 TSC_hg19_v1_chr20_-_22566094 NM_153675	457307	-	BC143791|PAX1|5075|paired box 1##BC143793|PAX1|5075|paired box 1##NM_006192|PAX1|5075|paired box 1##NM_002509|NKX2-2|4821|NK2 homeobox 2##BC006545|FOXA2|3170|forkhead box A2##BC019288|FOXA2|3170|forkhead box A2##DQ892883|FOXA2|3170|forkhead box A2##DQ896132|FOXA2|3170|forkhead box A2##AK301611|FOXA2|3170|forkhead box A2##BC011780|FOXA2|3170|forkhead box A2##NM_021784|FOXA2|3170|forkhead box A2##AB028021|FOXA2|3170|forkhead box A2##NM_153675|FOXA2|3170|forkhead box A2	0.0	0.0	
chr20	47417362	47417440	reg1017716.p1	3.744	+	TSC_hg19_v1_chr20_-_46415320 AY358461 CR749319 AY101176 NM_001161841 NM_198596	-1002083	-	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	-1002649	-	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	-1286717	+	AB037836 TSC_hg19_v1_chr20_-_47444291	26885	-	TSC_hg19_v1_chr20_-_47444450 AJ320261 NM_020820	27038	-	TSC_hg19_v1_chr20_+_47538255 BC050449 NM_006420 BC144625 BC144626 AF084521	120917	+	AY358461|SULF2|55959|sulfatase 2##CR749319|SULF2|55959|sulfatase 2##AY101176|SULF2|55959|sulfatase 2##NM_001161841|SULF2|55959|sulfatase 2##NM_198596|SULF2|55959|sulfatase 2##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AB037836|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##AJ320261|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##NM_020820|PREX1|57580|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1##BC050449|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##NM_006420|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144625|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##BC144626|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)##AF084521|ARFGEF2|10564|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	0.954102	0.0	denovo_WM_7:-31:0.837
chr4	1725046	1725113	reg1015596.p1	3.744	+	TSC_hg19_v1_chr4_+_1723248 AK302463 AK225631 BC106071 AF093543 AF479620 AJ243997 BC111771	-1811	+	TSC_hg19_v1_chr4_+_1723215 NM_006342	-1862	+	TSC_hg19_v1_chr4_-_1722981 BC126370 BC009331 BC018921 NM_001127266 NM_138385	-2048	-	TSC_hg19_v1_chr4_+_1795019 AB209441 NM_000142 NM_001163213 NM_022965	69947	+	DQ893606 AK293572 TSC_hg19_v1_chr4_-_1857827 BC014500 BC021208 AF061025 NM_012318	132752	-	AK289697 TSC_hg19_v1_chr4_+_1873132 NM_001042424	148005	+	AK302463|TACC3|10460|transforming, acidic coiled-coil containing protein 3##AK225631|TACC3|10460|transforming, acidic coiled-coil containing protein 3##BC106071|TACC3|10460|transforming, acidic coiled-coil containing protein 3##AF093543|TACC3|10460|transforming, acidic coiled-coil containing protein 3##AF479620|TACC3|10460|transforming, acidic coiled-coil containing protein 3##AJ243997|TACC3|10460|transforming, acidic coiled-coil containing protein 3##BC111771|TACC3|10460|transforming, acidic coiled-coil containing protein 3##NM_006342|TACC3|10460|transforming, acidic coiled-coil containing protein 3##BC126370|TMEM129|92305|transmembrane protein 129##BC009331|TMEM129|92305|transmembrane protein 129##BC018921|TMEM129|92305|transmembrane protein 129##NM_001127266|TMEM129|92305|transmembrane protein 129##NM_138385|TMEM129|92305|transmembrane protein 129##AB209441|FGFR3|2261|fibroblast growth factor receptor 3##NM_000142|FGFR3|2261|fibroblast growth factor receptor 3##NM_001163213|FGFR3|2261|fibroblast growth factor receptor 3##NM_022965|FGFR3|2261|fibroblast growth factor receptor 3##DQ893606|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##AK293572|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##BC014500|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##BC021208|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##AF061025|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##NM_012318|LETM1|3954|leucine zipper-EF-hand containing transmembrane protein 1##AK289697|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1##NM_001042424|WHSC1|7468|Wolf-Hirschhorn syndrome candidate 1	0.0	0.0	
chr5	68739782	68739848	reg1016579.p2	3.744	+	NM_001038603 NM_001244734 AK055094 BC033689 DQ682656 DQ682657 AK292962	-28869	+	AF085736 NM_133339	-72535	+	NM_133340 NM_133341 AJ001642 AJ004977 AF098533 AF098534	-72927	+	NM_002538 U53823	48303	+	U49184 TSC_hg19_v1_chr5_+_68788631 NM_001205254 AK313501 BC029886 AK290697	48732	+	NM_001205255 FJ786083 FJ786084 GQ225096 GQ225097 GQ225098 GQ402517 AB587564 DQ892423 DQ895637 AB451306 AB451437	60222	+	NM_001038603|MARVELD2|153562|MARVEL domain containing 2##NM_001244734|MARVELD2|153562|MARVEL domain containing 2##AK055094|MARVELD2|153562|MARVEL domain containing 2##BC033689|MARVELD2|153562|MARVEL domain containing 2##DQ682656|MARVELD2|153562|MARVEL domain containing 2##DQ682657|MARVELD2|153562|MARVEL domain containing 2##AK292962|MARVELD2|153562|MARVEL domain containing 2##AF085736|RAD17|5884|RAD17 homolog (S. pombe)##NM_133339|RAD17|5884|RAD17 homolog (S. pombe)##NM_133340|RAD17|5884|RAD17 homolog (S. pombe)##NM_133341|RAD17|5884|RAD17 homolog (S. pombe)##AJ001642|RAD17|5884|RAD17 homolog (S. pombe)##AJ004977|RAD17|5884|RAD17 homolog (S. pombe)##AF098533|RAD17|5884|RAD17 homolog (S. pombe)##AF098534|RAD17|5884|RAD17 homolog (S. pombe)##NM_002538|OCLN|100506658|occludin##U53823|OCLN|100506658|occludin##U49184|OCLN|100506658|occludin##NM_001205254|OCLN|100506658|occludin##AK313501|OCLN|100506658|occludin##BC029886|OCLN|100506658|occludin##AK290697|OCLN|100506658|occludin##NM_001205255|OCLN|100506658|occludin##FJ786083|OCLN|100506658|occludin##FJ786084|OCLN|100506658|occludin##GQ225096|OCLN|100506658|occludin##GQ225097|OCLN|100506658|occludin##GQ225098|OCLN|100506658|occludin##GQ402517|OCLN|100506658|occludin##DQ892423|OCLN|100506658|occludin##DQ895637|OCLN|100506658|occludin##AB451306|OCLN|100506658|occludin##AB451437|OCLN|100506658|occludin	0.990384	0.0	denovo_WM_7:28:0.814
chr9	5626142	5626300	reg1007331.p1	3.744	+	AF344424 NM_025239 AF329193 EF444806 BC113678 BC113680 BC143920 BC143921 BC074766	-115558	+	TSC_hg19_v1_chr9_+_5450455 NM_014143 DQ836393 AK300470 AK314567 AF233516 BC069381	-175714	+	TSC_hg19_v1_chr9_-_5437869 BC008212 AF220050 AK312736 AK027594 AF225420 NM_018465	-188341	-	TSC_hg19_v1_chr9_+_5629121 NM_001135920 NM_001206557 NM_020829	2906	+	BC036853 TSC_hg19_v1_chr9_-_5630098	3869	-	AL834191 AB058718 TSC_hg19_v1_chr9_-_5833045 BC136771 BC136773 BC144404	206730	-	AF344424|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_025239|PDCD1LG2|80380|programmed cell death 1 ligand 2##AF329193|PDCD1LG2|80380|programmed cell death 1 ligand 2##EF444806|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113678|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC113680|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143920|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC143921|PDCD1LG2|80380|programmed cell death 1 ligand 2##BC074766|PDCD1LG2|80380|programmed cell death 1 ligand 2##NM_014143|CD274|29126|CD274 molecule##DQ836393|CD274|29126|CD274 molecule##AK300470|CD274|29126|CD274 molecule##AK314567|CD274|29126|CD274 molecule##AF233516|CD274|29126|CD274 molecule##BC069381|CD274|29126|CD274 molecule##BC008212|C9orf46|55848|chromosome 9 open reading frame 46##AF220050|C9orf46|55848|chromosome 9 open reading frame 46##AK312736|C9orf46|55848|chromosome 9 open reading frame 46##AK027594|C9orf46|55848|chromosome 9 open reading frame 46##AF225420|C9orf46|55848|chromosome 9 open reading frame 46##NM_018465|C9orf46|55848|chromosome 9 open reading frame 46##NM_001135920|KIAA1432|57589|KIAA1432##NM_001206557|KIAA1432|57589|KIAA1432##NM_020829|KIAA1432|57589|KIAA1432##BC036853|C9orf46|55848|chromosome 9 open reading frame 46##AL834191|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##AB058718|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136771|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC136773|ERMP1|79956|endoplasmic reticulum metallopeptidase 1##BC144404|ERMP1|79956|endoplasmic reticulum metallopeptidase 1	0.991731	0.0	denovo_WM_7:13:0.331	denovo_WM_7:14:0.331	denovo_WM_7:15:0.331
chr9	68302792	68302873	reg1016234.p1	3.744	+	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	-376016	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-1749557	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-1808636	-	TSC_hg19_v1_chr9_+_68726468 AK311167	423670	+	TSC_hg19_v1_chr9_+_69065493 AK311167	762706	+	NM_001085476	899371	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6	0.988775	0.0	denovo_WM_7:34:0.243	denovo_WM_7:35:0.243	denovo_WM_7:36:0.243	denovo_WM_7:37:0.243
chr1	181784570	181784682	reg1012657.p1	3.743	+	NM_000721 NM_001205293 NM_001205294 L29384 L29385	-331926	+	AK300732 TSC_hg19_v1_chr1_+_181057835 AK314830 BC000128 AF258581 BC108253 AF178984	-726761	+	NM_016545	-726989	+	BC137223 BC137224 AK128654 NM_001009992	246171	-	TSC_hg19_v1_chr1_-_182354649 AK301600	570056	-	TSC_hg19_v1_chr1_-_182357758 BC127883	573137	-	NM_000721|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205293|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##NM_001205294|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29384|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##L29385|CACNA1E|777|calcium channel, voltage-dependent, R type, alpha 1E subunit##BC000128|IER5|51278|immediate early response 5##AF258581|IER5|51278|immediate early response 5##BC108253|IER5|51278|immediate early response 5##AF178984|IER5|51278|immediate early response 5##NM_016545|IER5|51278|immediate early response 5##BC137223|ZNF648|127665|zinc finger protein 648##BC137224|ZNF648|127665|zinc finger protein 648##AK128654|ZNF648|127665|zinc finger protein 648##NM_001009992|ZNF648|127665|zinc finger protein 648##AK301600|GLUL|2752|glutamate-ammonia ligase##BC127883|GLUL|2752|glutamate-ammonia ligase	1.938708	0.0	denovo_WM_7:-24:0.303	denovo_WM_7:-25:0.303	denovo_WM_7:-26:0.303	denovo_WM_7:-105:0.702
chr1	202995358	202995440	reg1014672.p2	3.743	+	TSC_hg19_v1_chr1_+_202976528 BC013073 NM_138391 NM_001079809 BC150647 CU680486 CU688332	-18840	+	AF070537 TSC_hg19_v1_chr1_+_202976519 AK291426 AK312985 AK309745 BC067775	-18880	+	TSC_hg19_v1_chr1_+_202976501 AK297222	-18907	+	AK126624 NM_015053 BC132923 BC132925 BC144262	24939	+	BT007233 CU691060 AB463908 EU831793 EU831870 TSC_hg19_v1_chr1_-_203055140 X17651 BC053899	59727	-	NM_002479	59977	-	BC013073|TMEM183A|92703|transmembrane protein 183A##NM_138391|TMEM183A|92703|transmembrane protein 183A##NM_001079809|TMEM183B|653659|transmembrane protein 183B##BC150647|TMEM183A|92703|transmembrane protein 183A##AF070537|TMEM183A|92703|transmembrane protein 183A##AK291426|TMEM183A|92703|transmembrane protein 183A##AK312985|TMEM183A|92703|transmembrane protein 183A##AK309745|TMEM183A|92703|transmembrane protein 183A##BC067775|TMEM183A|92703|transmembrane protein 183A##AK297222|TMEM183B|653659|transmembrane protein 183B##AK126624|PPFIA4|8497|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4##NM_015053|PPFIA4|8497|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4##BC132923|PPFIA4|8497|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4##BC132925|PPFIA4|8497|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4##BC144262|PPFIA4|8497|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4##BT007233|MYOG|4656|myogenin (myogenic factor 4)##EU831793|MYOG|4656|myogenin (myogenic factor 4)##EU831870|MYOG|4656|myogenin (myogenic factor 4)##X17651|MYOG|4656|myogenin (myogenic factor 4)##BC053899|MYOG|4656|myogenin (myogenic factor 4)##NM_002479|MYOG|4656|myogenin (myogenic factor 4)	0.0	0.0	
chr17	10679570	10679661	reg1006809.p1	3.743	+	AY550194 NM_001004313	-45970	-	NM_020233 BC070155 AB073393 AK292629 BC001294	-78667	+	TSC_hg19_v1_chr17_-_10600869 DQ891605 DQ894798 AF026852 AF183424 BC015504 AK098826 AK315595 AK074588 NM_004589	-78762	-	AK021549 TSC_hg19_v1_chr17_-_10741398 AK299808 NM_001101387	61792	-	NM_001173461 NM_001173462 NM_207386	465124	+	AK094349 TSC_hg19_v1_chr17_+_11465221 BC105704 BC105705 BC105707 BC105706	785581	+	AY550194|TMEM220|388335|transmembrane protein 220##NM_001004313|TMEM220|388335|transmembrane protein 220##NM_020233|C17orf48|56985|chromosome 17 open reading frame 48##BC070155|C17orf48|56985|chromosome 17 open reading frame 48##AB073393|C17orf48|56985|chromosome 17 open reading frame 48##AK292629|C17orf48|56985|chromosome 17 open reading frame 48##BC001294|C17orf48|56985|chromosome 17 open reading frame 48##DQ891605|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##DQ894798|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AF026852|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AF183424|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##BC015504|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK098826|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK315595|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK074588|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##NM_004589|SCO1|6341|SCO cytochrome oxidase deficient homolog 1 (yeast)##AK021549|PIRT|644139|phosphoinositide-interacting regulator of transient receptor potential channels##AK299808|PIRT|644139|phosphoinositide-interacting regulator of transient receptor potential channels##NM_001101387|PIRT|644139|phosphoinositide-interacting regulator of transient receptor potential channels##NM_001173461|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##NM_001173462|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##NM_207386|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##AK094349|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105704|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105705|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105707|SHISA6|388336|shisa homolog 6 (Xenopus laevis)##BC105706|SHISA6|388336|shisa homolog 6 (Xenopus laevis)	0.086412	0.0	
chr19	10494260	10494376	reg1007699.p2	3.743	+	TSC_hg19_v1_chr19_-_10491245 AK308360 NM_003331 AK303627 AK308379	-3039	-	TSC_hg19_v1_chr19_-_10491192 X54637 AK222672 BC014243	-3127	-	AF340060 AF340061 AB463787 BC040123 S50015 AK309643 BC058903 X69819 TSC_hg19_v1_chr19_-_10450307 AK301071 AX746321 X69711 BC034409 BC046121 AK312826 AK226023 NM_002162	-44009	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	19851	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	19895	-	TSC_hg19_v1_chr19_-_10514250 NM_007065	19938	-	AK308360|TYK2|7297|tyrosine kinase 2##NM_003331|TYK2|7297|tyrosine kinase 2##AK303627|TYK2|7297|tyrosine kinase 2##AK308379|TYK2|7297|tyrosine kinase 2##X54637|TYK2|7297|tyrosine kinase 2##AK222672|TYK2|7297|tyrosine kinase 2##BC014243|TYK2|7297|tyrosine kinase 2##AF340060|ICAM3|3385|intercellular adhesion molecule 3##AF340061|ICAM3|3385|intercellular adhesion molecule 3##BC040123|ICAM3|3385|intercellular adhesion molecule 3##S50015|ICAM3|3385|intercellular adhesion molecule 3##AK309643|ICAM3|3385|intercellular adhesion molecule 3##BC058903|ICAM3|3385|intercellular adhesion molecule 3##X69819|ICAM3|3385|intercellular adhesion molecule 3##AX746321|ICAM3|3385|intercellular adhesion molecule 3##X69711|ICAM3|3385|intercellular adhesion molecule 3##BC034409|ICAM3|3385|intercellular adhesion molecule 3##BC046121|ICAM3|3385|intercellular adhesion molecule 3##AK312826|ICAM3|3385|intercellular adhesion molecule 3##AK226023|ICAM3|3385|intercellular adhesion molecule 3##NM_002162|ICAM3|3385|intercellular adhesion molecule 3##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)	0.815704	0.0	denovo_WM_7:28:0.791
chr19	12909554	12909648	reg1015852.p2	3.743	+	AK222532 TSC_hg19_v1_chr19_+_12902299 AK313737 BC110372 BC004250 BC009465 BC009466 NM_002229 X51345	-7288	+	TSC_hg19_v1_chr19_+_12902286 DQ650707	-7311	+	TSC_hg19_v1_chr19_-_12886422 NM_001100176 NM_013312	-23174	-	BC000452 BC003022 BC064138 TSC_hg19_v1_chr19_-_12912615 Z22548 AK289485 AK293957 BC039428 AK022395 NM_005809 NM_181738	3063	-	TSC_hg19_v1_chr19_+_12917397 AK315327	7796	+	TSC_hg19_v1_chr19_+_12917432 NM_006397 BC011748 AY363912 Z97029 CR456841	7847	+	AK222532|JUNB|3726|jun B proto-oncogene##AK313737|JUNB|3726|jun B proto-oncogene##BC004250|JUNB|3726|jun B proto-oncogene##BC009465|JUNB|3726|jun B proto-oncogene##BC009466|JUNB|3726|jun B proto-oncogene##NM_002229|JUNB|3726|jun B proto-oncogene##X51345|JUNB|3726|jun B proto-oncogene##NM_001100176|HOOK2|29911|hook homolog 2 (Drosophila)##NM_013312|HOOK2|29911|hook homolog 2 (Drosophila)##BC000452|PRDX2|7001|peroxiredoxin 2##BC003022|PRDX2|7001|peroxiredoxin 2##BC064138|PRDX2|7001|peroxiredoxin 2##Z22548|PRDX2|7001|peroxiredoxin 2##AK289485|PRDX2|7001|peroxiredoxin 2##AK293957|PRDX2|7001|peroxiredoxin 2##BC039428|PRDX2|7001|peroxiredoxin 2##AK022395|PRDX2|7001|peroxiredoxin 2##NM_005809|PRDX2|7001|peroxiredoxin 2##NM_181738|PRDX2|7001|peroxiredoxin 2##AK315327|RNASEH2A|10535|ribonuclease H2, subunit A##NM_006397|RNASEH2A|10535|ribonuclease H2, subunit A##BC011748|RNASEH2A|10535|ribonuclease H2, subunit A##AY363912|RNASEH2A|10535|ribonuclease H2, subunit A##Z97029|RNASEH2A|10535|ribonuclease H2, subunit A##CR456841|RNASEH2A|10535|ribonuclease H2, subunit A	0.999406	0.0	denovo_WM_7:-86:0.720
chr19	6600126	6600220	reg1014062.p2	3.743	+	TSC_hg19_v1_chr19_-_6591162 S69339 L08096 NM_001252	-9015	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	-9067	-	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	-9141	-	TSC_hg19_v1_chr19_-_6670094 CR541854 CR541871 AB528780 AF036581 AY028261 AY358812 BC018058 AK292037	69951	-	AF064090 NM_003807 NM_172014	70425	-	TSC_hg19_v1_chr19_-_6720662 BC063852 BC150179 BC150200 K02765 AK304071 BC150299 NM_000064 AK299114	120483	-	S69339|CD70|970|CD70 molecule##L08096|CD70|970|CD70 molecule##NM_001252|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule##BT007211|CD70|970|CD70 molecule##CR541854|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##CR541871|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF036581|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY028261|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AY358812|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC018058|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AK292037|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##AF064090|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_003807|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##NM_172014|TNFSF14|8740|tumor necrosis factor (ligand) superfamily, member 14##BC063852|C3|718|complement component 3##BC150179|C3|718|complement component 3##BC150200|C3|718|complement component 3##K02765|C3|718|complement component 3##AK304071|C3|718|complement component 3##BC150299|C3|718|complement component 3##NM_000064|C3|718|complement component 3	0.998661	0.0	denovo_WM_7:-29:0.456	denovo_WM_7:-30:0.456
chr2	136810557	136810672	reg1018868.p1	3.743	+	TSC_hg19_v1_chr2_-_136743191 AK129521 NM_001349	-67398	-	TSC_hg19_v1_chr2_-_136743143 AK222476 BC000629 AK290607 J05032	-67485	-	BT006710 CU674308 DQ890741 DQ893912 TSC_hg19_v1_chr2_-_136743053 CR749809 BC107749 AY762100	-67559	-	AK309641 NM_001008540 TSC_hg19_v1_chr2_-_136873857	63184	-	AF025375 AY242129 BT006660 EU831811 EU831888 L01639 AF348491 BC020968 L06797 X71635 D10924 M99293 AK129916 AK296674 AK312244 D28433 TSC_hg19_v1_chr2_-_136875720 NM_003467	65062	-	TSC_hg19_v1_chr2_+_137523114 AK299929	712502	+	AK129521|DARS|1615|aspartyl-tRNA synthetase##NM_001349|DARS|1615|aspartyl-tRNA synthetase##AK222476|DARS|1615|aspartyl-tRNA synthetase##BC000629|DARS|1615|aspartyl-tRNA synthetase##AK290607|DARS|1615|aspartyl-tRNA synthetase##J05032|DARS|1615|aspartyl-tRNA synthetase##BT006710|DARS|1615|aspartyl-tRNA synthetase##DQ890741|DARS|1615|aspartyl-tRNA synthetase##DQ893912|DARS|1615|aspartyl-tRNA synthetase##CR749809|DARS|1615|aspartyl-tRNA synthetase##BC107749|DARS|1615|aspartyl-tRNA synthetase##AY762100|DARS|1615|aspartyl-tRNA synthetase##NM_001008540|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF025375|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AY242129|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BT006660|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831811|CXCR4|7852|chemokine (C-X-C motif) receptor 4##EU831888|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L01639|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AF348491|CXCR4|7852|chemokine (C-X-C motif) receptor 4##BC020968|CXCR4|7852|chemokine (C-X-C motif) receptor 4##L06797|CXCR4|7852|chemokine (C-X-C motif) receptor 4##X71635|CXCR4|7852|chemokine (C-X-C motif) receptor 4##D10924|CXCR4|7852|chemokine (C-X-C motif) receptor 4##M99293|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK129916|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK296674|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK312244|CXCR4|7852|chemokine (C-X-C motif) receptor 4##NM_003467|CXCR4|7852|chemokine (C-X-C motif) receptor 4##AK299929|THSD7B|80731|thrombospondin, type I, domain containing 7B	0.0	0.0	
chr5	96140614	96140717	reg1017761.p1	3.743	+	NM_173060 AL832349 AB026049 AK303900 TSC_hg19_v1_chr5_+_96038509 AK298541 AK299402 AK300624 AK314290 AK315146 AL832174 BX648397 AK303836 AK297879	-102130	+	TSC_hg19_v1_chr5_+_95998728 AK296919	-141948	+	BC013579 TSC_hg19_v1_chr5_+_95998220	-142470	+	TSC_hg19_v1_chr5_-_96143614 AF106037 AF183569 AF222340 AY358590 AK291636 AY028806 AY028807	2957	-	TSC_hg19_v1_chr5_-_96143701 NM_001040458 NM_016442	3125	-	AK310535 BC030775 NM_001198541	9160	-	NM_173060|CAST|831|calpastatin##AL832349|CAST|831|calpastatin##AB026049|CAST|831|calpastatin##AK303900|CAST|831|calpastatin##AK298541|CAST|831|calpastatin##AK299402|CAST|831|calpastatin##AK300624|CAST|831|calpastatin##AK314290|CAST|831|calpastatin##AK315146|CAST|831|calpastatin##AL832174|CAST|831|calpastatin##BX648397|CAST|831|calpastatin##AK303836|CAST|831|calpastatin##AK297879|CAST|831|calpastatin##AK296919|CAST|831|calpastatin##BC013579|CAST|831|calpastatin##AF106037|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF183569|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AF222340|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY358590|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK291636|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028806|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AY028807|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001040458|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_016442|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##AK310535|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##BC030775|ERAP1|51752|endoplasmic reticulum aminopeptidase 1##NM_001198541|ERAP1|51752|endoplasmic reticulum aminopeptidase 1	1.318777	0.0	denovo_WM_7:-8:0.424	denovo_WM_7:-9:0.424	denovo_WM_7:60:0.289
chr8	96104747	96104835	reg1001619.p2	3.743	+	TSC_hg19_v1_chr8_+_96037224 NM_152416 BC028166 DQ891641 DQ894830 AK298631 AK301414	-67487	+	TSC_hg19_v1_chr8_-_95961604 AK315071 AF409114 AF409115 AK125880 NM_001135733 NM_033285	-143134	-	TSC_hg19_v1_chr8_-_95907430 BC007015 BC020729 NM_057749	-197339	-	TSC_hg19_v1_chr8_+_96145948 NM_024613	41154	+	TSC_hg19_v1_chr8_+_96146012 AL834473 BC011806	41217	+	TSC_hg19_v1_chr8_+_96146116 AK023249	41345	+	NM_152416|C8orf38|137682|chromosome 8 open reading frame 38##BC028166|C8orf38|137682|chromosome 8 open reading frame 38##DQ891641|C8orf38|137682|chromosome 8 open reading frame 38##DQ894830|C8orf38|137682|chromosome 8 open reading frame 38##AK298631|C8orf38|137682|chromosome 8 open reading frame 38##AK301414|C8orf38|137682|chromosome 8 open reading frame 38##AK315071|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409114|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AF409115|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##AK125880|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_001135733|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##NM_033285|TP53INP1|94241|tumor protein p53 inducible nuclear protein 1##BC007015|CCNE2|9134|cyclin E2##BC020729|CCNE2|9134|cyclin E2##NM_057749|CCNE2|9134|cyclin E2##NM_024613|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AL834473|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##BC011806|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2##AK023249|PLEKHF2|79666|pleckstrin homology domain containing, family F (with FYVE domain) member 2	0.999064	0.0	
chr1	12128796	12128901	reg1015773.p2	3.742	+	M83554 NM_001243 BC136400 BC171762 S75768	-5304	+	TSC_hg19_v1_chr1_+_12079557 AK024020 BC008068	-49278	+	AK022500 TSC_hg19_v1_chr1_+_12079535	-49314	+	D86042 BC063482 NM_152942 BC073839 BC141804	57168	+	TSC_hg19_v1_chr1_+_12227051 BC011844 BC042167 M32315 NM_001066 BC052977 M55994	98213	+	TSC_hg19_v1_chr1_+_12227079 AY148473 AB590591 CU690944 BT019927 EU826615	98263	+	M83554|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_001243|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC136400|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC171762|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##S75768|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##AK024020|MIIP|60672|migration and invasion inhibitory protein##BC008068|MIIP|60672|migration and invasion inhibitory protein##AK022500|MIIP|60672|migration and invasion inhibitory protein##D86042|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC063482|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##NM_152942|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC073839|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC141804|TNFRSF8|943|tumor necrosis factor receptor superfamily, member 8##BC011844|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC042167|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M32315|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##NM_001066|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BC052977|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##M55994|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##AY148473|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##BT019927|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B##EU826615|TNFRSF1B|7133|tumor necrosis factor receptor superfamily, member 1B	0.979184	0.0	denovo_WM_7:91:0.702
chr2	156075621	156075753	reg1012522.p1	3.742	+	NM_002239 U50964 AK293824 BC022495 GU068048 GU074515 GU074516 CU692656 DQ892363 DQ895572	-520498	+	TSC_hg19_v1_chr2_+_154728434 NM_052917 AK131195	-1347243	+	AK311958 BC002908 AK074808 AB043585 NM_019845	-1740436	-	TSC_hg19_v1_chr2_-_157186683 HQ692824 HQ709176 EU832662 EU832740 AB590645	1111003	-	S77154 FJ643484 TSC_hg19_v1_chr2_-_157189197 X75918 BC066890 BC009288 AK299439 AK291456 AK223625 AK309786 NM_006186	1113476	-	AK291065 U79250 TSC_hg19_v1_chr2_+_157291964 NM_001083112	1216271	+	NM_002239|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##U50964|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##AK293824|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##BC022495|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU068048|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##GU074515|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ892363|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##DQ895572|KCNJ3|3760|potassium inwardly-rectifying channel, subfamily J, member 3##NM_052917|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK131195|GALNT13|114805|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13)##AK311958|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##BC002908|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AK074808|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##AB043585|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##NM_019845|RPRM|56475|reprimo, TP53 dependent G2 arrest mediator candidate##HQ692824|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##HQ709176|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832662|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##EU832740|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##S77154|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##FJ643484|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##X75918|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC066890|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##BC009288|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK299439|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291456|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK223625|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK309786|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##NM_006186|NR4A2|4929|nuclear receptor subfamily 4, group A, member 2##AK291065|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##U79250|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)##NM_001083112|GPD2|2820|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	1.095895	0.0	denovo_WM_7:62:0.589
chr2	25736802	25736966	reg1019004.p2	3.742	+	TSC_hg19_v1_chr2_-_25565458 BC032392 NM_175629 NM_175630	-171422	-	TSC_hg19_v1_chr2_-_25565353 AB208833	-171521	-	TSC_hg19_v1_chr2_-_25565338 BC051864 AF331856	-171556	-	AK294357 TSC_hg19_v1_chr2_-_25896434 AK300019 BC016655 AF022728 Y12712 AK225724 AK294174 AK094494 BC049366 NM_021907 NM_033147 NM_033148 NM_183360 NM_183361	159517	-	AB385496 TSC_hg19_v1_chr2_-_26101159	364245	-	TSC_hg19_v1_chr2_-_26101174 AB084279	364289	-	BC032392|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175629|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##NM_175630|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AB208833|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##BC051864|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AF331856|DNMT3A|1788|DNA (cytosine-5-)-methyltransferase 3 alpha##AK294357|DTNB|1838|dystrobrevin, beta##AK300019|DTNB|1838|dystrobrevin, beta##BC016655|DTNB|1838|dystrobrevin, beta##AF022728|DTNB|1838|dystrobrevin, beta##Y12712|DTNB|1838|dystrobrevin, beta##AK225724|DTNB|1838|dystrobrevin, beta##AK294174|DTNB|1838|dystrobrevin, beta##AK094494|DTNB|1838|dystrobrevin, beta##BC049366|DTNB|1838|dystrobrevin, beta##NM_021907|DTNB|1838|dystrobrevin, beta##NM_033147|DTNB|1838|dystrobrevin, beta##NM_033148|DTNB|1838|dystrobrevin, beta##NM_183360|DTNB|1838|dystrobrevin, beta##NM_183361|DTNB|1838|dystrobrevin, beta##AB084279|ASXL2|55252|additional sex combs like 2 (Drosophila)	1.0108	0.0	denovo_WM_7:-5:0.794
chr2	90485112	90485195	reg1009540.p1	3.742	+	TSC_hg19_v1_chr2_+_90211706 Z69013	-273435	+	TSC_hg19_v1_chr2_+_90077732 AJ131061	-407399	+	Z27171 L06158 AF490907 X72480 AF490924 X72424 X72441 X72477 U44792 X72427 AJ548508 L01279 L38434 M74019 M87478 S67637 U43765 U43766 U43770 U43773 U66190 X85996 X85997 Y14736 AJ010446 BC073775 AF417853 TSC_hg19_v1_chr2_-_89619885 BC070334	-865300	-	TSC_hg19_v1_chr2_-_91847997 BC030764	1362850	-	AK097438 BC021716 NM_144705 AK296678 CU692394	5052097	+	BC000458 BC003006 AK311844 TSC_hg19_v1_chr2_+_95691453 NM_002371 NM_022438 NM_022439 NM_022440 M15800 AB529205 CR541879 X76678 X76679 X76680 X76681	5206329	+	BC070334|IGKC|3514|immunoglobulin kappa constant##AK097438|TEKT4|150483|tektin 4##BC021716|TEKT4|150483|tektin 4##NM_144705|TEKT4|150483|tektin 4##BC000458|MAL|4118|mal, T-cell differentiation protein##BC003006|MAL|4118|mal, T-cell differentiation protein##AK311844|MAL|4118|mal, T-cell differentiation protein##NM_002371|MAL|4118|mal, T-cell differentiation protein##NM_022438|MAL|4118|mal, T-cell differentiation protein##NM_022439|MAL|4118|mal, T-cell differentiation protein##NM_022440|MAL|4118|mal, T-cell differentiation protein##M15800|MAL|4118|mal, T-cell differentiation protein##CR541879|MAL|4118|mal, T-cell differentiation protein##X76678|MAL|4118|mal, T-cell differentiation protein##X76679|MAL|4118|mal, T-cell differentiation protein##X76680|MAL|4118|mal, T-cell differentiation protein##X76681|MAL|4118|mal, T-cell differentiation protein	0.0	0.0	
chr3	119271352	119271480	reg1017736.p1	3.742	+	NM_016589 TSC_hg19_v1_chr3_+_119217393 AF139077 AL136622 AK026250 AK225954 AF210057 AL390077 AY358633 AL390090 BC012341 AB528090 AM393632 CU680290 CR457158 CR533524	-53943	+	TSC_hg19_v1_chr3_+_119187809 NM_152305 AY298903 BC030614 AK295984 AK301002 AK315367 AK222937 AF168711 BC048810 AY358581 AK075444 BC011871 CU688946 CU690580	-83591	+	TSC_hg19_v1_chr3_-_119182462 BC003192 BC010070 BC021277 AK222950 AK223248 AK001764 NM_018266	-88947	-	M27533 BC042665 AK292129 NM_005191	7025	-	TSC_hg19_v1_chr3_+_119298355 AK304560 AK291787	26979	+	BC063883 NM_001125 TSC_hg19_v1_chr3_+_119298606	27149	+	NM_016589|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF139077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL136622|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK026250|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AK225954|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AF210057|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390077|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AY358633|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AL390090|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##BC012341|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##AM393632|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR457158|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##CR533524|TIMMDC1|51300|translocase of inner mitochondrial membrane domain containing 1##NM_152305|POGLUT1|56983|protein O-glucosyltransferase 1##AY298903|POGLUT1|56983|protein O-glucosyltransferase 1##BC030614|POGLUT1|56983|protein O-glucosyltransferase 1##AK295984|POGLUT1|56983|protein O-glucosyltransferase 1##AK301002|POGLUT1|56983|protein O-glucosyltransferase 1##AK315367|POGLUT1|56983|protein O-glucosyltransferase 1##AK222937|POGLUT1|56983|protein O-glucosyltransferase 1##AF168711|POGLUT1|56983|protein O-glucosyltransferase 1##BC048810|POGLUT1|56983|protein O-glucosyltransferase 1##AY358581|POGLUT1|56983|protein O-glucosyltransferase 1##AK075444|POGLUT1|56983|protein O-glucosyltransferase 1##BC003192|TMEM39A|55254|transmembrane protein 39A##BC010070|TMEM39A|55254|transmembrane protein 39A##BC021277|TMEM39A|55254|transmembrane protein 39A##AK222950|TMEM39A|55254|transmembrane protein 39A##AK223248|TMEM39A|55254|transmembrane protein 39A##AK001764|TMEM39A|55254|transmembrane protein 39A##NM_018266|TMEM39A|55254|transmembrane protein 39A##M27533|CD80|941|CD80 molecule##BC042665|CD80|941|CD80 molecule##AK292129|CD80|941|CD80 molecule##NM_005191|CD80|941|CD80 molecule##AK304560|ADPRH|141|ADP-ribosylarginine hydrolase##AK291787|ADPRH|141|ADP-ribosylarginine hydrolase##BC063883|ADPRH|141|ADP-ribosylarginine hydrolase##NM_001125|ADPRH|141|ADP-ribosylarginine hydrolase	1.011342	0.0	
chr3	16587858	16587983	reg1012153.p2	3.742	+	TSC_hg19_v1_chr3_-_16555204 D42043 AY237654 NM_015150	-32696	-	TSC_hg19_v1_chr3_-_16555030 BC051336 BC069209 AK074446 BC098270 BC100667 BC100669 BC121795	-32902	-	NM_138381 TSC_hg19_v1_chr3_+_16306718 DQ364598 AK307258 BC008322	-281212	+	BX648638 AK303026 NM_001190811	58350	-	U65918 U66726 U66078 BC027595 NM_001351	59046	-	AB029015 NM_001144382	338531	+	D42043|RFTN1|23180|raftlin, lipid raft linker 1##AY237654|RFTN1|23180|raftlin, lipid raft linker 1##NM_015150|RFTN1|23180|raftlin, lipid raft linker 1##BC051336|RFTN1|23180|raftlin, lipid raft linker 1##BC069209|RFTN1|23180|raftlin, lipid raft linker 1##AK074446|RFTN1|23180|raftlin, lipid raft linker 1##BC098270|RFTN1|23180|raftlin, lipid raft linker 1##BC100667|RFTN1|23180|raftlin, lipid raft linker 1##BC100669|RFTN1|23180|raftlin, lipid raft linker 1##BC121795|RFTN1|23180|raftlin, lipid raft linker 1##NM_138381|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##DQ364598|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##AK307258|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BC008322|OXNAD1|92106|oxidoreductase NAD-binding domain containing 1##BX648638|DAZL|1618|deleted in azoospermia-like##AK303026|DAZL|1618|deleted in azoospermia-like##NM_001190811|DAZL|1618|deleted in azoospermia-like##U65918|DAZL|1618|deleted in azoospermia-like##U66726|DAZL|1618|deleted in azoospermia-like##U66078|DAZL|1618|deleted in azoospermia-like##BC027595|DAZL|1618|deleted in azoospermia-like##NM_001351|DAZL|1618|deleted in azoospermia-like##AB029015|PLCL2|23228|phospholipase C-like 2##NM_001144382|PLCL2|23228|phospholipase C-like 2	0.020429	0.0	
chr4	26146599	26146723	reg1015629.p1	3.742	+	TSC_hg19_v1_chr4_+_25915869 NM_001145432 BC032431 BC086307 BC006003 BC046171 BC062747 BC014348 BC040154	-230797	+	TSC_hg19_v1_chr4_-_25864611 BC060867 NM_015187	-282107	-	NM_001177999 AK314514	-488571	+	L07875 BC020780 NM_005349 NM_203283	174658	+	L07874 L07872 AK303244 AK311419 AB527795 NM_015874 NM_203284 TSC_hg19_v1_chr4_+_26322435	175648	+	TSC_hg19_v1_chr4_+_26322635 AK302230	175975	+	NM_001145432|C4orf52|389203|chromosome 4 open reading frame 52##BC032431|C4orf52|389203|chromosome 4 open reading frame 52##BC086307|C4orf52|389203|chromosome 4 open reading frame 52##BC006003|C4orf52|389203|chromosome 4 open reading frame 52##BC046171|C4orf52|389203|chromosome 4 open reading frame 52##BC062747|C4orf52|389203|chromosome 4 open reading frame 52##BC014348|C4orf52|389203|chromosome 4 open reading frame 52##BC040154|C4orf52|389203|chromosome 4 open reading frame 52##BC060867|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_015187|SEL1L3|23231|sel-1 suppressor of lin-12-like 3 (C. elegans)##NM_001177999|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##AK314514|SLC34A2|10568|solute carrier family 34 (sodium phosphate), member 2##L07875|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##BC020780|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_005349|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203283|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##L07872|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK303244|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK311419|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_015874|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##NM_203284|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region##AK302230|RBPJ|3516|recombination signal binding protein for immunoglobulin kappa J region	0.997747	0.0	denovo_WM_7:0:0.310	denovo_WM_7:-1:0.310	denovo_WM_7:-2:0.310
chr6	111580351	111580465	reg1016217.p1	3.742	+	AB057445 NM_018593 BC066985 TSC_hg19_v1_chr6_+_111408810	-171613	+	TSC_hg19_v1_chr6_+_111408673 AK126183 BC034031	-171732	+	AK292165 TSC_hg19_v1_chr6_+_111303240 AK024740 AK301662 AL833613 BC005347 BC035314 NM_032194 CU690066	-277134	+	NM_153369 TSC_hg19_v1_chr6_+_111580541 AK093136 AX747946 AK292735 AK315016	115	+	TSC_hg19_v1_chr6_+_111580568 BC036115	164	+	BC038986 AF303220 AF157476 AF179428 AF179429 TSC_hg19_v1_chr6_-_111804167	223740	-	AB057445|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##NM_018593|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC066985|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AK126183|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##BC034031|SLC16A10|117247|solute carrier family 16, member 10 (aromatic amino acid transporter)##AK292165|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK024740|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AK301662|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##AL833613|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC005347|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##BC035314|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_032194|RPF2|84154|ribosome production factor 2 homolog (S. cerevisiae)##NM_153369|KIAA1919|91749|KIAA1919##AK093136|KIAA1919|91749|KIAA1919##AK292735|KIAA1919|91749|KIAA1919##AK315016|KIAA1919|91749|KIAA1919##BC036115|KIAA1919|91749|KIAA1919##AF303220|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF157476|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179428|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)##AF179429|REV3L|5980|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)	0.0	0.0	
chr16	23862139	23862261	reg1019409.p1	3.741	+	AB587511 EU832791 GQ129253 TSC_hg19_v1_chr16_+_23847512	-14694	+	X06318 X07109 TSC_hg19_v1_chr16_+_23847360 M13975	-14805	+	TSC_hg19_v1_chr16_+_23847321 BC036472	-14868	+	BC037899 NM_006539 AK095553	404674	+	AK055453 TSC_hg19_v1_chr16_+_24267474	405274	+	BC033741 TSC_hg19_v1_chr16_+_24267692 AK315150 BC040005	405498	+	EU832791|PRKCB|5579|protein kinase C, beta##GQ129253|PRKCB|5579|protein kinase C, beta##X06318|PRKCB|5579|protein kinase C, beta##X07109|PRKCB|5579|protein kinase C, beta##M13975|PRKCB|5579|protein kinase C, beta##BC036472|PRKCB|5579|protein kinase C, beta##BC037899|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##NM_006539|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK095553|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK055453|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC033741|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##AK315150|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3##BC040005|CACNG3|10368|calcium channel, voltage-dependent, gamma subunit 3	0.0	0.0	
chr17	42277845	42277935	reg1018143.p1	3.741	+	TSC_hg19_v1_chr17_-_42277350 AK296689	-505	-	BC037418 HQ258188 TSC_hg19_v1_chr17_-_42275499 BC113595 BC126113 NM_001098833 NM_020218	-2414	-	TSC_hg19_v1_chr17_+_42264588 AF370373	-13273	+	AK291733 TSC_hg19_v1_chr17_-_42296871	18988	-	X56687 TSC_hg19_v1_chr17_-_42296940	19042	-	TSC_hg19_v1_chr17_-_42297051 NM_001076684 NM_014233	19154	-	AK296689|ATXN7L3|56970|ataxin 7-like 3##BC037418|ATXN7L3|56970|ataxin 7-like 3##HQ258188|ATXN7L3|56970|ataxin 7-like 3##BC113595|ATXN7L3|56970|ataxin 7-like 3##BC126113|ATXN7L3|56970|ataxin 7-like 3##NM_001098833|ATXN7L3|56970|ataxin 7-like 3##NM_020218|ATXN7L3|56970|ataxin 7-like 3##AF370373|TMUB2|79089|transmembrane and ubiquitin-like domain containing 2##AK291733|UBTF|7343|upstream binding transcription factor, RNA polymerase I##X56687|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_001076684|UBTF|7343|upstream binding transcription factor, RNA polymerase I##NM_014233|UBTF|7343|upstream binding transcription factor, RNA polymerase I	0.0	0.0	
chr17	55530297	55530457	reg1013037.p2	3.741	+	AK093888 AX748353 NM_170721	-196004	+	TSC_hg19_v1_chr17_+_55334093 BC001526 NM_138962 AB528970 DQ892317 DQ895519	-196404	+	NM_001242903 TSC_hg19_v1_chr17_+_55163099 AK297810 NM_001242902 AK308397	-367234	+	TSC_hg19_v1_chr17_-_55927399 AF151896 AF161447 AK312729 BC000242 NM_016070	397027	-	AK000746 NM_017949	450372	-	TSC_hg19_v1_chr17_-_56032774 BC008034 BC056882	502299	-	AK093888|MSI2|124540|musashi homolog 2 (Drosophila)##NM_170721|MSI2|124540|musashi homolog 2 (Drosophila)##BC001526|MSI2|124540|musashi homolog 2 (Drosophila)##NM_138962|MSI2|124540|musashi homolog 2 (Drosophila)##DQ892317|MSI2|124540|musashi homolog 2 (Drosophila)##DQ895519|MSI2|124540|musashi homolog 2 (Drosophila)##NM_001242903|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK297810|AKAP1|8165|A kinase (PRKA) anchor protein 1##NM_001242902|AKAP1|8165|A kinase (PRKA) anchor protein 1##AK308397|AKAP1|8165|A kinase (PRKA) anchor protein 1##AF151896|MRPS23|51649|mitochondrial ribosomal protein S23##AF161447|MRPS23|51649|mitochondrial ribosomal protein S23##AK312729|MRPS23|51649|mitochondrial ribosomal protein S23##BC000242|MRPS23|51649|mitochondrial ribosomal protein S23##NM_016070|MRPS23|51649|mitochondrial ribosomal protein S23##AK000746|CUEDC1|404093|CUE domain containing 1##NM_017949|CUEDC1|404093|CUE domain containing 1##BC056882|CUEDC1|404093|CUE domain containing 1	0.999843	0.0	
chr18	4409351	4409440	reg1018923.p1	3.741	+	AK294777 AK294717 NM_001242762 NM_001242763	-534668	-	AK299880 NM_001242764 TSC_hg19_v1_chr18_-_3874316	-535111	-	AB000276 U67988 AK308827 TSC_hg19_v1_chr18_-_3845355 AK294747 NM_001003809 NM_001242765 NM_001242766	-564065	-	AK304101 TSC_hg19_v1_chr18_-_4455255	45858	-	AK316099 NM_001242761 NM_004746 TSC_hg19_v1_chr18_-_4455271	45875	-	TSC_hg19_v1_chr18_-_5197257 NM_001145194	787857	-	AK294777|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294717|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242762|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242763|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK299880|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242764|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AB000276|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##U67988|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK294747|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001003809|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242765|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242766|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK304101|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##AK316099|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001242761|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_004746|DLGAP1|9229|discs, large (Drosophila) homolog-associated protein 1##NM_001145194|C18orf42|642597|chromosome 18 open reading frame 42	0.0	0.0	
chr19	35352917	35352986	reg1018231.p2	3.741	+	TSC_hg19_v1_chr19_-_35264106 AK302548 AK307339 BC044615 AK055225 BC092428 NM_001007248	-88839	-	NM_001029997 NM_001145665	-127472	+	TSC_hg19_v1_chr19_+_35225150 AK295492	-127795	+	NM_001099437 NM_001099438 NM_194325 TSC_hg19_v1_chr19_+_35417809 BC142996 BX640666 AK295515 AK290435	64927	+	AK304550 TSC_hg19_v1_chr19_-_35454915	101942	-	NM_175872 TSC_hg19_v1_chr19_-_35454952	102007	-	AK302548|ZNF599|148103|zinc finger protein 599##AK307339|ZNF599|148103|zinc finger protein 599##BC044615|ZNF599|148103|zinc finger protein 599##AK055225|ZNF599|148103|zinc finger protein 599##BC092428|ZNF599|148103|zinc finger protein 599##NM_001007248|ZNF599|148103|zinc finger protein 599##NM_001029997|ZNF181|339318|zinc finger protein 181##NM_001145665|ZNF181|339318|zinc finger protein 181##AK295492|ZNF181|339318|zinc finger protein 181##NM_001099437|ZNF30|90075|zinc finger protein 30##NM_001099438|ZNF30|90075|zinc finger protein 30##NM_194325|ZNF30|90075|zinc finger protein 30##BC142996|ZNF30|90075|zinc finger protein 30##BX640666|ZNF30|90075|zinc finger protein 30##AK295515|ZNF30|90075|zinc finger protein 30##AK290435|ZNF30|90075|zinc finger protein 30##AK304550|ZNF792|126375|zinc finger protein 792##NM_175872|ZNF792|126375|zinc finger protein 792	0.0	0.0	
chr11	68934196	68934322	reg1018331.p1	3.740	+	BC064339 TSC_hg19_v1_chr11_+_68857563	-76733	+	TSC_hg19_v1_chr11_+_68816414 AK123089 BC063008 AK298919	-117833	+	TSC_hg19_v1_chr11_+_68816317 NM_139075 AK023366 AY029200	-117909	+	TSC_hg19_v1_chr11_+_69061621 AK000473 AK290121 NM_138768 AK026148 AJ223366 BC011815	127363	+	TSC_hg19_v1_chr11_+_69455867 NM_053056	521597	+	TSC_hg19_v1_chr11_+_69455923 AK299044 AK313136 X59798 Z23022 BC025302 M74092 M64349	521651	+	AK123089|TPCN2|219931|two pore segment channel 2##BC063008|TPCN2|219931|two pore segment channel 2##AK298919|TPCN2|219931|two pore segment channel 2##NM_139075|TPCN2|219931|two pore segment channel 2##AK023366|TPCN2|219931|two pore segment channel 2##AY029200|TPCN2|219931|two pore segment channel 2##AK290121|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_138768|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AK026148|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##AJ223366|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##BC011815|MYEOV|26579|myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas)##NM_053056|CCND1|595|cyclin D1##AK299044|CCND1|595|cyclin D1##AK313136|CCND1|595|cyclin D1##X59798|CCND1|595|cyclin D1##BC025302|CCND1|595|cyclin D1##M74092|CCND1|595|cyclin D1##M64349|CCND1|595|cyclin D1	0.0	0.023085	
chr16	31103633	31103760	reg1010757.p2	3.740	+	AJ627035 NM_001039503	-3567	-	TSC_hg19_v1_chr16_+_31085751 BC035589	-17932	+	TSC_hg19_v1_chr16_+_31085742 NM_014699 AK304808	-17962	+	AY358456 TSC_hg19_v1_chr16_-_31106001	2279	-	AY423044 AY521634 BC000828 TSC_hg19_v1_chr16_-_31106058 BC002911	2374	-	TSC_hg19_v1_chr16_-_31106093 AK129513	2411	-	AJ627035|PRSS53|339105|protease, serine, 53##NM_001039503|PRSS53|339105|protease, serine, 53##BC035589|ZNF646|9726|zinc finger protein 646##NM_014699|ZNF646|9726|zinc finger protein 646##AK304808|ZNF646|9726|zinc finger protein 646##AY423044|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AY521634|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##BC000828|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##BC002911|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1##AK129513|VKORC1|79001|vitamin K epoxide reductase complex, subunit 1	0.997705	0.0	denovo_WM_7:-39:0.719
chr3	137707317	137707420	reg1016287.p2	3.740	+	NM_004189 AK314127 TSC_hg19_v1_chr3_+_137483154	-224221	+	AY358305 NM_144717 AK316084 AK296832 BC063696 BC033292 CU687808	-1030538	+	NM_001190796 TSC_hg19_v1_chr3_+_136649346 AK301460	-1058031	+	AK098474 NM_001002026 AF349452	10311	+	AK298103 AY358479 TSC_hg19_v1_chr3_+_137728997 BC142708 BC146668 NM_016369 BC063845 AF221069	21635	+	AK057406 NM_001170538	124953	-	NM_004189|SOX14|8403|SRY (sex determining region Y)-box 14##AK314127|SOX14|8403|SRY (sex determining region Y)-box 14##AY358305|IL20RB|53833|interleukin 20 receptor beta##NM_144717|IL20RB|53833|interleukin 20 receptor beta##AK316084|IL20RB|53833|interleukin 20 receptor beta##AK296832|IL20RB|53833|interleukin 20 receptor beta##BC063696|IL20RB|53833|interleukin 20 receptor beta##BC033292|IL20RB|53833|interleukin 20 receptor beta##NM_001190796|NCK1|4690|NCK adaptor protein 1##AK301460|NCK1|4690|NCK adaptor protein 1##AK098474|CLDN18|51208|claudin 18##NM_001002026|CLDN18|51208|claudin 18##AF349452|CLDN18|51208|claudin 18##AK298103|CLDN18|51208|claudin 18##AY358479|CLDN18|51208|claudin 18##BC142708|CLDN18|51208|claudin 18##BC146668|CLDN18|51208|claudin 18##NM_016369|CLDN18|51208|claudin 18##BC063845|CLDN18|51208|claudin 18##AF221069|CLDN18|51208|claudin 18##AK057406|DZIP1L|199221|DAZ interacting protein 1-like##NM_001170538|DZIP1L|199221|DAZ interacting protein 1-like	0.0	0.0	
chr5	59837412	59837505	reg1012389.p2	3.740	+	TSC_hg19_v1_chr5_+_59784006 AL050198 AK094518	-53418	+	TSC_hg19_v1_chr5_-_59783893 AY245866 AK307363 NM_001165899	-53554	-	NM_001104631	-647838	-	TSC_hg19_v1_chr5_-_59995928 AF490257	158458	-	TSC_hg19_v1_chr5_-_59995963 BC019075 AF303178 AK002114 AK299242 AK300782 AK290684 NM_001145208 NM_018369	158507	-	AB181393 BC094792 TSC_hg19_v1_chr5_-_60140097 NM_001104558 NM_024930	302613	-	AL050198|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)##AK094518|PART1|25859|prostate androgen-regulated transcript 1 (non-protein coding)##AY245866|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AK307363|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001165899|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##NM_001104631|PDE4D|5144|phosphodiesterase 4D, cAMP-specific##AF490257|DEPDC1B|55789|DEP domain containing 1B##BC019075|DEPDC1B|55789|DEP domain containing 1B##AF303178|DEPDC1B|55789|DEP domain containing 1B##AK002114|DEPDC1B|55789|DEP domain containing 1B##AK299242|DEPDC1B|55789|DEP domain containing 1B##AK300782|DEPDC1B|55789|DEP domain containing 1B##AK290684|DEPDC1B|55789|DEP domain containing 1B##NM_001145208|DEPDC1B|55789|DEP domain containing 1B##NM_018369|DEPDC1B|55789|DEP domain containing 1B##AB181393|ELOVL7|79993|ELOVL fatty acid elongase 7##BC094792|ELOVL7|79993|ELOVL fatty acid elongase 7##NM_001104558|ELOVL7|79993|ELOVL fatty acid elongase 7##NM_024930|ELOVL7|79993|ELOVL fatty acid elongase 7	0.0	0.0	
chr7	20153238	20153384	reg1015448.p1	3.740	+	BX648384 NM_152774	-340908	-	TSC_hg19_v1_chr7_-_19748650 HQ258381 BC070358 BC013179 BC130300 BC014574 BC130298 NM_001002926 BC056267 AK301329	-404665	-	AB528954 BC069147 BC101135 BC101136 BC101137 BC101138 AF517122 NM_152898	-968298	-	BC137090 BC144470 TSC_hg19_v1_chr7_-_20257008 AK131400 NM_182762	103669	-	AK295044 TSC_hg19_v1_chr7_+_20370337	217026	+	BC002630 NM_002214 M73780	217423	+	BX648384|TMEM196|256130|transmembrane protein 196##NM_152774|TMEM196|256130|transmembrane protein 196##HQ258381|TWISTNB|221830|TWIST neighbor##BC070358|TWISTNB|221830|TWIST neighbor##BC013179|TWISTNB|221830|TWIST neighbor##BC130300|TWISTNB|221830|TWIST neighbor##BC014574|TWISTNB|221830|TWIST neighbor##BC130298|TWISTNB|221830|TWIST neighbor##NM_001002926|TWISTNB|221830|TWIST neighbor##BC056267|TWISTNB|221830|TWIST neighbor##AK301329|TWISTNB|221830|TWIST neighbor##BC069147|FERD3L|222894|Fer3-like (Drosophila)##BC101135|FERD3L|222894|Fer3-like (Drosophila)##BC101136|FERD3L|222894|Fer3-like (Drosophila)##BC101137|FERD3L|222894|Fer3-like (Drosophila)##BC101138|FERD3L|222894|Fer3-like (Drosophila)##AF517122|FERD3L|222894|Fer3-like (Drosophila)##NM_152898|FERD3L|222894|Fer3-like (Drosophila)##BC137090|MACC1|346389|metastasis associated in colon cancer 1##BC144470|MACC1|346389|metastasis associated in colon cancer 1##AK131400|MACC1|346389|metastasis associated in colon cancer 1##NM_182762|MACC1|346389|metastasis associated in colon cancer 1##AK295044|ITGB8|3696|integrin, beta 8##BC002630|ITGB8|3696|integrin, beta 8##NM_002214|ITGB8|3696|integrin, beta 8##M73780|ITGB8|3696|integrin, beta 8	0.869318	0.0	denovo_WM_7:20:0.408	denovo_WM_7:21:0.409
chr11	57017324	57017418	reg1010948.p2	3.739	+	AK075252 BC032688 AK315542 AK074514 X89271 NM_005161	-12571	-	AK127591 NM_001005210 BC136737 BC136739 BC150572	-68072	+	BC137198 NM_001005323	-261004	+	AF441771 TSC_hg19_v1_chr11_-_57089790	72375	-	TSC_hg19_v1_chr11_-_57092425 AB051528 BC150333 NM_033396 AK124903	75004	-	AB209132 BC091486 TSC_hg19_v1_chr11_-_57103354 M86737 NM_003146	85978	-	AK075252|APLNR|187|apelin receptor##BC032688|APLNR|187|apelin receptor##AK315542|APLNR|187|apelin receptor##AK074514|APLNR|187|apelin receptor##X89271|APLNR|187|apelin receptor##NM_005161|APLNR|187|apelin receptor##AK127591|LRRC55|219527|leucine rich repeat containing 55##NM_001005210|LRRC55|219527|leucine rich repeat containing 55##BC136737|LRRC55|219527|leucine rich repeat containing 55##BC136739|LRRC55|219527|leucine rich repeat containing 55##BC150572|LRRC55|219527|leucine rich repeat containing 55##BC137198|OR5AK2|390181|olfactory receptor, family 5, subfamily AK, member 2##NM_001005323|OR5AK2|390181|olfactory receptor, family 5, subfamily AK, member 2##AF441771|TNKS1BP1|85456|tankyrase 1 binding protein 1, 182kDa##AB051528|TNKS1BP1|85456|tankyrase 1 binding protein 1, 182kDa##BC150333|TNKS1BP1|85456|tankyrase 1 binding protein 1, 182kDa##NM_033396|TNKS1BP1|85456|tankyrase 1 binding protein 1, 182kDa##AK124903|TNKS1BP1|85456|tankyrase 1 binding protein 1, 182kDa##AB209132|SSRP1|6749|structure specific recognition protein 1##BC091486|SSRP1|6749|structure specific recognition protein 1##M86737|SSRP1|6749|structure specific recognition protein 1##NM_003146|SSRP1|6749|structure specific recognition protein 1	0.999899	0.971108	CTCF.p2:14:0.971
chr1	171189173	171189272	reg1017901.p1	3.739	+	NM_001460 AK304385 AK312877 BC005894 Y09267 AL833218	-34800	+	NM_001002294 NM_006894 AK223166 TSC_hg19_v1_chr1_+_171060044 AK298406 Z47552 AK298456 AK296105 AK310785 AK313197 BC032016	-129181	+	NM_001163629 NM_025063 AK027203 BC113390 BC113392	-284575	+	AK290113 AK315100 M64082 NM_002021 AK296198	28439	+	BC002780 NM_002022 Z11737	94206	+	TSC_hg19_v1_chr1_+_171454689 BC066968 NM_015172 BC058930 BC026108 BC045713 BC001260 BC006090	265472	+	NM_001460|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AK304385|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AK312877|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##BC005894|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##Y09267|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##AL833218|FMO2|2327|flavin containing monooxygenase 2 (non-functional)##NM_001002294|FMO3|2328|flavin containing monooxygenase 3##NM_006894|FMO3|2328|flavin containing monooxygenase 3##AK223166|FMO3|2328|flavin containing monooxygenase 3##AK298406|FMO3|2328|flavin containing monooxygenase 3##Z47552|FMO3|2328|flavin containing monooxygenase 3##AK296105|FMO3|2328|flavin containing monooxygenase 3##AK310785|FMO3|2328|flavin containing monooxygenase 3##AK313197|FMO3|2328|flavin containing monooxygenase 3##BC032016|FMO3|2328|flavin containing monooxygenase 3##NM_001163629|C1orf129|80133|chromosome 1 open reading frame 129##NM_025063|C1orf129|80133|chromosome 1 open reading frame 129##AK027203|C1orf129|80133|chromosome 1 open reading frame 129##BC113390|C1orf129|80133|chromosome 1 open reading frame 129##BC113392|C1orf129|80133|chromosome 1 open reading frame 129##AK290113|FMO1|2326|flavin containing monooxygenase 1##AK315100|FMO1|2326|flavin containing monooxygenase 1##M64082|FMO1|2326|flavin containing monooxygenase 1##NM_002021|FMO1|2326|flavin containing monooxygenase 1##AK296198|FMO1|2326|flavin containing monooxygenase 1##BC002780|FMO4|2329|flavin containing monooxygenase 4##NM_002022|FMO4|2329|flavin containing monooxygenase 4##Z11737|FMO4|2329|flavin containing monooxygenase 4##BC066968|PRRC2C|23215|proline-rich coiled-coil 2C##NM_015172|PRRC2C|23215|proline-rich coiled-coil 2C##BC058930|PRRC2C|23215|proline-rich coiled-coil 2C##BC026108|PRRC2C|23215|proline-rich coiled-coil 2C##BC045713|PRRC2C|23215|proline-rich coiled-coil 2C##BC001260|PRRC2C|23215|proline-rich coiled-coil 2C##BC006090|PRRC2C|23215|proline-rich coiled-coil 2C	1.951806	0.0	denovo_WM_7:24:0.313	denovo_WM_7:25:0.313	denovo_WM_7:26:0.313	denovo_WM_7:-78:0.578	denovo_WM_7:-83:0.351
chr12	56510355	56510524	reg1013233.p2	3.739	+	TSC_hg19_v1_chr12_+_56498422 BC011718 BC032111 BC072007 U59435 BC069786 AB464072 CU675707 DQ893446 DQ896751	-11972	+	TSC_hg19_v1_chr12_+_56498365 BC007561 BC001951	-12054	+	TSC_hg19_v1_chr12_+_56498349 AK291796	-12091	+	NM_001035267 NM_021104 Z12962 BC102007 BC102008 BC102009 D28462 BC014383 BC070254 BC105286 BC015984 BC070252 BC070253 BC070255 BC105279 BC105296 BC105794 BC105795 BC105799 TSC_hg19_v1_chr12_+_56510418 BC017820 BC062462 BC064907 BC142666 BC142726 BC082759 BC066328 BC032611 BC070483	29	+	TSC_hg19_v1_chr12_+_56512049 AK027357 NM_032786 BC018708	1570	+	TSC_hg19_v1_chr12_+_56522018 NM_001184796 NM_015292 AK022790	11558	+	BC032111|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC072007|PA2G4|5036|proliferation-associated 2G4, 38kDa##U59435|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC069786|PA2G4|5036|proliferation-associated 2G4, 38kDa##DQ893446|PA2G4|5036|proliferation-associated 2G4, 38kDa##DQ896751|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC007561|PA2G4|5036|proliferation-associated 2G4, 38kDa##BC001951|PA2G4|5036|proliferation-associated 2G4, 38kDa##AK291796|PA2G4|5036|proliferation-associated 2G4, 38kDa##NM_001035267|RPL41|6171|ribosomal protein L41##NM_021104|RPL41|6171|ribosomal protein L41##Z12962|RPL41|6171|ribosomal protein L41##BC102007|RPL41|6171|ribosomal protein L41##BC102008|RPL41|6171|ribosomal protein L41##BC102009|RPL41|6171|ribosomal protein L41##D28462|RPL41|6171|ribosomal protein L41##BC014383|RPL41|6171|ribosomal protein L41##BC070254|RPL41|6171|ribosomal protein L41##BC105286|RPL41|6171|ribosomal protein L41##BC015984|RPL41|6171|ribosomal protein L41##BC070252|RPL41|6171|ribosomal protein L41##BC070253|RPL41|6171|ribosomal protein L41##BC070255|RPL41|6171|ribosomal protein L41##BC105279|RPL41|6171|ribosomal protein L41##BC105296|RPL41|6171|ribosomal protein L41##BC105794|RPL41|6171|ribosomal protein L41##BC105795|RPL41|6171|ribosomal protein L41##BC105799|RPL41|6171|ribosomal protein L41##BC017820|RPL41|6171|ribosomal protein L41##BC062462|RPL41|6171|ribosomal protein L41##BC064907|RPL41|6171|ribosomal protein L41##BC142666|RPL41|6171|ribosomal protein L41##BC142726|RPL41|6171|ribosomal protein L41##BC082759|RPL41|6171|ribosomal protein L41##BC066328|RPL41|6171|ribosomal protein L41##BC032611|RPL41|6171|ribosomal protein L41##BC070483|RPL41|6171|ribosomal protein L41##AK027357|ZC3H10|84872|zinc finger CCCH-type containing 10##NM_032786|ZC3H10|84872|zinc finger CCCH-type containing 10##BC018708|ZC3H10|84872|zinc finger CCCH-type containing 10##NM_001184796|ESYT1|23344|extended synaptotagmin-like protein 1##NM_015292|ESYT1|23344|extended synaptotagmin-like protein 1##AK022790|ESYT1|23344|extended synaptotagmin-like protein 1	0.0	0.0	
chr14	77838932	77839112	reg1001328.p2	3.739	+	NM_001513	-51317	+	NM_145870 NM_145871 AK315154 BC001453 TSC_hg19_v1_chr14_+_77787378 AK309054 AK315609 BC052245 BC069047 AJ001838 U86529 CR456987	-51652	+	CU689220 AB209114 BC031651 TSC_hg19_v1_chr14_-_77787215 BX248027 AF105020 AY090480 NM_013382	-51892	-	AY598329 NM_213601 TSC_hg19_v1_chr14_-_77843438 AK095650 BC101510	4404	-	BC104834 BC104836 AK093282 NM_001010860	4729	+	CU688228 BC066965 AK057371 NM_001113475	50292	-	NM_001513|GSTZ1|2954|glutathione transferase zeta 1##NM_145870|GSTZ1|2954|glutathione transferase zeta 1##NM_145871|GSTZ1|2954|glutathione transferase zeta 1##AK315154|GSTZ1|2954|glutathione transferase zeta 1##BC001453|GSTZ1|2954|glutathione transferase zeta 1##AK309054|GSTZ1|2954|glutathione transferase zeta 1##AK315609|GSTZ1|2954|glutathione transferase zeta 1##BC052245|GSTZ1|2954|glutathione transferase zeta 1##AJ001838|GSTZ1|2954|glutathione transferase zeta 1##U86529|GSTZ1|2954|glutathione transferase zeta 1##CR456987|GSTZ1|2954|glutathione transferase zeta 1##AB209114|POMT2|29954|protein-O-mannosyltransferase 2##BC031651|POMT2|29954|protein-O-mannosyltransferase 2##BX248027|POMT2|29954|protein-O-mannosyltransferase 2##AF105020|POMT2|29954|protein-O-mannosyltransferase 2##AY090480|POMT2|29954|protein-O-mannosyltransferase 2##NM_013382|POMT2|29954|protein-O-mannosyltransferase 2##AY598329|TMED8|283578|transmembrane emp24 protein transport domain containing 8##NM_213601|TMED8|283578|transmembrane emp24 protein transport domain containing 8##AK095650|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC101510|TMED8|283578|transmembrane emp24 protein transport domain containing 8##BC104834|SAMD15|161394|sterile alpha motif domain containing 15##BC104836|SAMD15|161394|sterile alpha motif domain containing 15##AK093282|SAMD15|161394|sterile alpha motif domain containing 15##NM_001010860|SAMD15|161394|sterile alpha motif domain containing 15##BC066965|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##AK057371|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1##NM_001113475|NOXRED1|122945|NADP-dependent oxidoreductase domain containing 1	0.0	0.0	
chr17	40756561	40756633	reg1013507.p1	3.739	+	TSC_hg19_v1_chr17_-_40729727 AB528689 GQ851964 GQ851965 AF440240 AB030304 NM_013290 NM_016556 FJ952179 FJ952180 FJ952181 FJ952182 FJ952183 BC008792	-26849	-	TSC_hg19_v1_chr17_+_40719130 AF203978 AK314378 AB527756 BT009812	-37459	+	TSC_hg19_v1_chr17_+_40719119 NM_170607 NM_198204 NM_198205 AF213666 AF213667 AF213668 BC010689 AK290258 AK296114 BC014537 AK000150 AK303221 AK309628 AK315432	-37501	+	BX647175 CU690614 TSC_hg19_v1_chr17_-_40761363	4754	-	NM_001070	4760	+	TSC_hg19_v1_chr17_-_40761382 AK294791	4778	-	GQ851964|PSMC3IP|29893|PSMC3 interacting protein##GQ851965|PSMC3IP|29893|PSMC3 interacting protein##AF440240|PSMC3IP|29893|PSMC3 interacting protein##AB030304|PSMC3IP|29893|PSMC3 interacting protein##NM_013290|PSMC3IP|29893|PSMC3 interacting protein##NM_016556|PSMC3IP|29893|PSMC3 interacting protein##FJ952179|PSMC3IP|29893|PSMC3 interacting protein##FJ952180|PSMC3IP|29893|PSMC3 interacting protein##FJ952181|PSMC3IP|29893|PSMC3 interacting protein##FJ952182|PSMC3IP|29893|PSMC3 interacting protein##FJ952183|PSMC3IP|29893|PSMC3 interacting protein##BC008792|PSMC3IP|29893|PSMC3 interacting protein##AF203978|MLX|6945|MAX-like protein X##AK314378|MLX|6945|MAX-like protein X##BT009812|MLX|6945|MAX-like protein X##NM_170607|MLX|6945|MAX-like protein X##NM_198204|MLX|6945|MAX-like protein X##NM_198205|MLX|6945|MAX-like protein X##AF213666|MLX|6945|MAX-like protein X##AF213667|MLX|6945|MAX-like protein X##AF213668|MLX|6945|MAX-like protein X##BC010689|MLX|6945|MAX-like protein X##AK290258|MLX|6945|MAX-like protein X##AK296114|MLX|6945|MAX-like protein X##BC014537|MLX|6945|MAX-like protein X##AK000150|MLX|6945|MAX-like protein X##AK303221|MLX|6945|MAX-like protein X##AK309628|MLX|6945|MAX-like protein X##AK315432|MLX|6945|MAX-like protein X##BX647175|FAM134C|162427|family with sequence similarity 134, member C##NM_001070|TUBG1|7283|tubulin, gamma 1##AK294791|FAM134C|162427|family with sequence similarity 134, member C	0.0	0.0	
chr21	37879412	37879542	reg1014312.p1	3.739	+	AF314090 AY355348 NM_001146079 NM_144492	-27090	-	BC012126 NM_012130 AY355349	-40746	-	TSC_hg19_v1_chr21_+_37757689 NM_005441 AK313152 BC001143	-121787	+	AJ566765 NM_001146078	35420	-	AJ566766 NM_001146077	69389	-	BC052313 BC067104 TSC_hg19_v1_chr21_+_38071448	191963	+	AF314090|CLDN14|23562|claudin 14##AY355348|CLDN14|23562|claudin 14##NM_001146079|CLDN14|23562|claudin 14##NM_144492|CLDN14|23562|claudin 14##BC012126|CLDN14|23562|claudin 14##NM_012130|CLDN14|23562|claudin 14##AY355349|CLDN14|23562|claudin 14##NM_005441|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AK313152|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##BC001143|CHAF1B|8208|chromatin assembly factor 1, subunit B (p60)##AJ566765|CLDN14|23562|claudin 14##NM_001146078|CLDN14|23562|claudin 14##AJ566766|CLDN14|23562|claudin 14##NM_001146077|CLDN14|23562|claudin 14	0.915737	0.0	denovo_WM_7:-47:0.397	denovo_WM_7:-48:0.350
chr3	56285508	56285610	reg1016076.p1	3.739	+	TSC_hg19_v1_chr3_-_55521567 AK090582	-763941	-	BC064694 NM_003392 AK290375 TSC_hg19_v1_chr3_-_55521332	-764227	-	AK290869 TSC_hg19_v1_chr3_-_55515412	-770151	-	BC111550 BC112391 AB002376 NM_015576	216818	-	TSC_hg19_v1_chr3_+_56591202 NM_001012506 NM_001141947 BC047509 BC132827	305643	+	AK125303 TSC_hg19_v1_chr3_+_56591241 AL833326 AL832692 AK095688	305687	+	AK090582|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC064694|WNT5A|7474|wingless-type MMTV integration site family, member 5A##NM_003392|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290375|WNT5A|7474|wingless-type MMTV integration site family, member 5A##AK290869|WNT5A|7474|wingless-type MMTV integration site family, member 5A##BC111550|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##BC112391|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##AB002376|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_015576|ERC2|26059|ELKS/RAB6-interacting/CAST family member 2##NM_001012506|CCDC66|285331|coiled-coil domain containing 66##NM_001141947|CCDC66|285331|coiled-coil domain containing 66##BC047509|CCDC66|285331|coiled-coil domain containing 66##BC132827|CCDC66|285331|coiled-coil domain containing 66##AK125303|CCDC66|285331|coiled-coil domain containing 66##AL833326|CCDC66|285331|coiled-coil domain containing 66##AL832692|CCDC66|285331|coiled-coil domain containing 66##AK095688|CCDC66|285331|coiled-coil domain containing 66	0.293793	0.993854	CTCF.p2:13:0.994
chr8	72274349	72274463	reg1017576.p1	3.739	+	TSC_hg19_v1_chr8_-_72274302 AK307379	-113	-	AK127798 AK295897 TSC_hg19_v1_chr8_-_72274006	-421	-	AF467247 BC121798 BC121799 AJ000097 NM_172058 NM_172059 NM_172060	-5557	-	AJ000098 NM_000503 TSC_hg19_v1_chr8_-_72274481	69	-	BC035138 BC048982 TSC_hg19_v1_chr8_-_72459928	185503	-	TSC_hg19_v1_chr8_+_72756330 AK123315 BC094782	481868	+	AK307379|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK127798|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK295897|EYA1|2138|eyes absent homolog 1 (Drosophila)##AF467247|EYA1|2138|eyes absent homolog 1 (Drosophila)##BC121798|EYA1|2138|eyes absent homolog 1 (Drosophila)##BC121799|EYA1|2138|eyes absent homolog 1 (Drosophila)##AJ000097|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_172058|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_172059|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_172060|EYA1|2138|eyes absent homolog 1 (Drosophila)##AJ000098|EYA1|2138|eyes absent homolog 1 (Drosophila)##NM_000503|EYA1|2138|eyes absent homolog 1 (Drosophila)##AK123315|LOC100132891|100132891|uncharacterized LOC100132891	1.957018	0.0	denovo_WM_7:2:0.978	denovo_WM_7:-12:0.979
chr10	112332722	112332818	reg1017877.p1	3.738	+	TSC_hg19_v1_chr10_+_112327452 NM_005445 AK315845 AK289771 AF020043 BC047324 AB587343	-5278	+	NM_004419 TSC_hg19_v1_chr10_+_112257664 U15932 AB209823 BC062545 U16996 AB489171 EU831449 EU831536	-75019	+	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	-268070	-	AF067163 TSC_hg19_v1_chr10_+_112344155	11345	+	TSC_hg19_v1_chr10_+_112404115 EU822950 NM_001134363	71359	+	NM_001199492 NM_014456 NM_145341 AK312540 TSC_hg19_v1_chr10_+_112631673	298842	+	NM_005445|SMC3|9126|structural maintenance of chromosomes 3##AK315845|SMC3|9126|structural maintenance of chromosomes 3##AK289771|SMC3|9126|structural maintenance of chromosomes 3##AF020043|SMC3|9126|structural maintenance of chromosomes 3##BC047324|SMC3|9126|structural maintenance of chromosomes 3##NM_004419|DUSP5|1847|dual specificity phosphatase 5##U15932|DUSP5|1847|dual specificity phosphatase 5##AB209823|DUSP5|1847|dual specificity phosphatase 5##BC062545|DUSP5|1847|dual specificity phosphatase 5##U16996|DUSP5|1847|dual specificity phosphatase 5##EU831449|DUSP5|1847|dual specificity phosphatase 5##EU831536|DUSP5|1847|dual specificity phosphatase 5##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1##AF067163|SMC3|9126|structural maintenance of chromosomes 3##EU822950|RBM20|282996|RNA binding motif protein 20##NM_001134363|RBM20|282996|RNA binding motif protein 20##NM_001199492|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_014456|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##NM_145341|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)##AK312540|PDCD4|27250|programmed cell death 4 (neoplastic transformation inhibitor)	0.0	0.0	
chr1	201377472	201377563	reg1015092.p2	3.738	+	TSC_hg19_v1_chr1_-_201368726 BC071890	-8776	-	BX647307 U42408 TSC_hg19_v1_chr1_-_201368661 BC009742 NM_005558	-8872	-	DQ893656 DQ895808 TSC_hg19_v1_chr1_-_201368483 AK310917 AK313388	-9051	-	AJ315823 BC012601 TSC_hg19_v1_chr1_-_201390859 AK223588 J04760 AK311896 AL831820 AL831975 BC012600 BX510903 NM_003281	13342	-	BC014390 TSC_hg19_v1_chr1_-_201438317 AF151100 AK075179 AK222644 BC068273 NM_012396	60748	-	AK293053 NM_001193572	88183	-	BC071890|LAD1|3898|ladinin 1##BX647307|LAD1|3898|ladinin 1##U42408|LAD1|3898|ladinin 1##BC009742|LAD1|3898|ladinin 1##NM_005558|LAD1|3898|ladinin 1##DQ893656|LAD1|3898|ladinin 1##DQ895808|LAD1|3898|ladinin 1##AK310917|LAD1|3898|ladinin 1##AK313388|LAD1|3898|ladinin 1##AJ315823|TNNI1|7135|troponin I type 1 (skeletal, slow)##BC012601|TNNI1|7135|troponin I type 1 (skeletal, slow)##AK223588|TNNI1|7135|troponin I type 1 (skeletal, slow)##J04760|TNNI1|7135|troponin I type 1 (skeletal, slow)##AK311896|TNNI1|7135|troponin I type 1 (skeletal, slow)##AL831820|TNNI1|7135|troponin I type 1 (skeletal, slow)##AL831975|TNNI1|7135|troponin I type 1 (skeletal, slow)##BC012600|TNNI1|7135|troponin I type 1 (skeletal, slow)##BX510903|TNNI1|7135|troponin I type 1 (skeletal, slow)##NM_003281|TNNI1|7135|troponin I type 1 (skeletal, slow)##BC014390|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AF151100|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AK075179|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AK222644|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##BC068273|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##NM_012396|PHLDA3|23612|pleckstrin homology-like domain, family A, member 3##AK293053|CSRP1|1465|cysteine and glycine-rich protein 1##NM_001193572|CSRP1|1465|cysteine and glycine-rich protein 1	0.0	0.247165	CTCF.p2:0:0.247
chr14	84342063	84342148	reg1016808.p1	3.738	+	TSC_hg19_v1_chr14_-_82000198 NM_001244984 NM_005065	-2341878	-	TSC_hg19_v1_chr14_-_82000165 AB020335 AY358651 BC054336 AF052059 AK075511	-2341957	-	HQ258668 AF380833 BC117493 BC117495 BC069389 BC069359 BC069502 BC069587 AF449430 NM_033104	-2477279	-	TSC_hg19_v1_chr14_+_85996487 AK056649 NM_013231	1654368	+	TSC_hg19_v1_chr14_+_85996515 BC126249 BC130290 BC143936	1654436	+	TSC_hg19_v1_chr14_+_85999692 AK297248	1657480	+	NM_001244984|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##NM_005065|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AB020335|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AY358651|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##BC054336|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AF052059|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##AK075511|SEL1L|6400|sel-1 suppressor of lin-12-like (C. elegans)##HQ258668|STON2|85439|stonin 2##AF380833|STON2|85439|stonin 2##BC117493|STON2|85439|stonin 2##BC117495|STON2|85439|stonin 2##BC069389|STON2|85439|stonin 2##BC069359|STON2|85439|stonin 2##BC069502|STON2|85439|stonin 2##BC069587|STON2|85439|stonin 2##AF449430|STON2|85439|stonin 2##NM_033104|STON2|85439|stonin 2##AK056649|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##NM_013231|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC126249|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC130290|FLRT2|23768|fibronectin leucine rich transmembrane protein 2##BC143936|FLRT2|23768|fibronectin leucine rich transmembrane protein 2	0.05656	0.0	
chr19	35952326	35952423	reg1005362.p2	3.738	+	AB378083 AB464537 BC096198 BC096199 BC096200 BC096201 NM_005306 BC095535	-11757	+	AK290710 NM_005304 BC035657	-102880	+	NM_005303 AB464536 BC120944 EF611308 BC095536 BC120943	-109924	+	AM392574 AM392667 AM392672 AM392738 AM392847 AM392851 AM393397 AM393477 AY359007 HQ258707 BC130501 NM_001244847 NM_207392	29014	-	AY622964 AY789707 AF086315 AL832080 NM_001035516	40431	-	AY789698 AY789699 AY789700 AY789701 AY789702 AY789703 AY789704 AY789705 AY789706 BC011886 TSC_hg19_v1_chr19_-_36001373 AK096215 AK304668 AK316475 EF158323 NM_001126059 EF158324 EF158325 EF158326	48999	-	AB378083|FFAR2|2867|free fatty acid receptor 2##BC096198|FFAR2|2867|free fatty acid receptor 2##BC096199|FFAR2|2867|free fatty acid receptor 2##BC096200|FFAR2|2867|free fatty acid receptor 2##BC096201|FFAR2|2867|free fatty acid receptor 2##NM_005306|FFAR2|2867|free fatty acid receptor 2##BC095535|FFAR2|2867|free fatty acid receptor 2##AK290710|FFAR3|2865|free fatty acid receptor 3##NM_005304|FFAR3|2865|free fatty acid receptor 3##BC035657|FFAR3|2865|free fatty acid receptor 3##NM_005303|FFAR1|2864|free fatty acid receptor 1##BC120944|FFAR1|2864|free fatty acid receptor 1##EF611308|FFAR1|2864|free fatty acid receptor 1##BC095536|FFAR1|2864|free fatty acid receptor 1##BC120943|FFAR1|2864|free fatty acid receptor 1##AM392574|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392667|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392672|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392738|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392847|KRTDAP|388533|keratinocyte differentiation-associated protein##AM392851|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393397|KRTDAP|388533|keratinocyte differentiation-associated protein##AM393477|KRTDAP|388533|keratinocyte differentiation-associated protein##AY359007|KRTDAP|388533|keratinocyte differentiation-associated protein##HQ258707|KRTDAP|388533|keratinocyte differentiation-associated protein##BC130501|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_001244847|KRTDAP|388533|keratinocyte differentiation-associated protein##NM_207392|KRTDAP|388533|keratinocyte differentiation-associated protein##AY622964|DMKN|93099|dermokine##AY789707|DMKN|93099|dermokine##AF086315|DMKN|93099|dermokine##AL832080|DMKN|93099|dermokine##NM_001035516|DMKN|93099|dermokine##AY789698|DMKN|93099|dermokine##AY789699|DMKN|93099|dermokine##AY789700|DMKN|93099|dermokine##AY789701|DMKN|93099|dermokine##AY789702|DMKN|93099|dermokine##AY789703|DMKN|93099|dermokine##AY789704|DMKN|93099|dermokine##AY789705|DMKN|93099|dermokine##AY789706|DMKN|93099|dermokine##BC011886|DMKN|93099|dermokine##AK096215|DMKN|93099|dermokine##AK304668|DMKN|93099|dermokine##AK316475|DMKN|93099|dermokine##EF158323|DMKN|93099|dermokine##NM_001126059|DMKN|93099|dermokine##EF158324|DMKN|93099|dermokine##EF158325|DMKN|93099|dermokine##EF158326|DMKN|93099|dermokine	0.993413	0.019391	denovo_WM_7:35:0.966
chr19	49312310	49312432	reg1016138.p2	3.738	+	AY359086 NM_019113 AB021975 AB590410 DQ891786 DQ894970	-52953	+	D87935 D87936 D87937 NM_000148	-53725	-	AB195682 BC034769 NM_182575 AK301750	-62276	-	AK310243 U68418 CU674922 DQ892350 DQ895554 AF268047 AF268048 TSC_hg19_v1_chr19_-_49314287 BC001900 AK093627 AK309428 AK223522 AK310101 AK314548 NM_001164773 NM_001190	1877	-	AB528622 CU675337 TSC_hg19_v1_chr19_-_49339769 BC006283 BC006294 AK307437 AF126781	27403	-	TSC_hg19_v1_chr19_-_49339923 NM_016246	27552	-	AY359086|FGF21|26291|fibroblast growth factor 21##NM_019113|FGF21|26291|fibroblast growth factor 21##AB021975|FGF21|26291|fibroblast growth factor 21##DQ891786|FGF21|26291|fibroblast growth factor 21##DQ894970|FGF21|26291|fibroblast growth factor 21##D87935|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87936|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##D87937|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##NM_000148|FUT1|2523|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group)##AB195682|IZUMO1|284359|izumo sperm-egg fusion 1##BC034769|IZUMO1|284359|izumo sperm-egg fusion 1##NM_182575|IZUMO1|284359|izumo sperm-egg fusion 1##AK301750|IZUMO1|284359|izumo sperm-egg fusion 1##AK310243|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##U68418|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ892350|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##DQ895554|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268047|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AF268048|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC001900|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK093627|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK309428|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK223522|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK310101|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##AK314548|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001164773|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##NM_001190|BCAT2|587|branched chain amino-acid transaminase 2, mitochondrial##BC006283|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##BC006294|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AK307437|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##AF126781|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14##NM_016246|HSD17B14|51171|hydroxysteroid (17-beta) dehydrogenase 14	1.992925	0.0	denovo_WM_7:-23:0.250	denovo_WM_7:-24:0.675	denovo_WM_7:-39:0.822
chr20	32344091	32344169	reg1020133.p2	3.738	+	BC132873 BC144188 BC157823 BC146811 BC094738 NM_032819 BC063492 BC040440 AB587355 HQ258664	-24334	+	TSC_hg19_v1_chr20_-_32308117 CR533471 CU674580 EU832287 EU832372 BC001147 AK023879 AF072864 AL136648 AK301532 AK316589 AK297018 NM_007238 NM_183397	-36116	-	TSC_hg19_v1_chr20_-_32274190 BC065188 S49592 M96577 BC050369 NM_005225	-69933	-	TSC_hg19_v1_chr20_+_32399127 NM_176812	54956	+	TSC_hg19_v1_chr20_+_32399155 AB100261 BC033859 AY726594 AY329085	55090	+	TSC_hg19_v1_chr20_+_32581531 NM_007367 NM_016732	237349	+	BC132873|ZNF341|84905|zinc finger protein 341##BC144188|ZNF341|84905|zinc finger protein 341##BC157823|ZNF341|84905|zinc finger protein 341##BC146811|ZNF341|84905|zinc finger protein 341##BC094738|ZNF341|84905|zinc finger protein 341##NM_032819|ZNF341|84905|zinc finger protein 341##BC063492|ZNF341|84905|zinc finger protein 341##BC040440|ZNF341|84905|zinc finger protein 341##HQ258664|ZNF341|84905|zinc finger protein 341##CR533471|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832287|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##EU832372|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##BC001147|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK023879|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AF072864|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AL136648|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK301532|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK316589|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##AK297018|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_007238|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##NM_183397|PXMP4|11264|peroxisomal membrane protein 4, 24kDa##S49592|E2F1|1869|E2F transcription factor 1##M96577|E2F1|1869|E2F transcription factor 1##BC050369|E2F1|1869|E2F transcription factor 1##NM_005225|E2F1|1869|E2F transcription factor 1##NM_176812|CHMP4B|128866|charged multivesicular body protein 4B##AB100261|CHMP4B|128866|charged multivesicular body protein 4B##BC033859|CHMP4B|128866|charged multivesicular body protein 4B##AY726594|CHMP4B|128866|charged multivesicular body protein 4B##AY329085|CHMP4B|128866|charged multivesicular body protein 4B##NM_007367|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))##NM_016732|RALY|22913|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	0.998504	0.0	denovo_WM_7:52:0.449	denovo_WM_7:53:0.449
chr20	5016986	5017151	reg1002851.p1	3.738	+	BC013112 AF164142 NM_203327	-26143	-	TSC_hg19_v1_chr20_-_4982149 D87075 NM_005116 DQ011866 AK296304 AK297253	-34908	-	CR627436 TSC_hg19_v1_chr20_-_4804255 AK291458 AK222650 AY154470 D79990 NM_014737	-212874	-	TSC_hg19_v1_chr20_-_5093685 AY359115 BC015113 AK055700 BC110408 BC011990 BC009768 BC009770 AF161392 BC009769 AK315606 BC066317 AK309823 BC070212 NM_001009923 NM_001009924 NM_001009925 NM_014145	76547	-	CR536501 CR541799 AB464071 DQ891403 DQ894581 M15796 TSC_hg19_v1_chr20_-_5100605 BC000491 BC062439 D28458 AK313286 M29310 NM_182649	83487	-	AK300558 AK311014 NM_002592	90158	-	BC013112|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AF164142|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_203327|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##D87075|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##NM_005116|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##DQ011866|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK296304|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##AK297253|SLC23A2|9962|solute carrier family 23 (nucleobase transporters), member 2##CR627436|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK291458|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AK222650|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY154470|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##D79990|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##NM_014737|RASSF2|9770|Ras association (RalGDS/AF-6) domain family member 2##AY359115|C20orf30|29058|chromosome 20 open reading frame 30##BC015113|C20orf30|29058|chromosome 20 open reading frame 30##AK055700|C20orf30|29058|chromosome 20 open reading frame 30##BC110408|C20orf30|29058|chromosome 20 open reading frame 30##BC011990|C20orf30|29058|chromosome 20 open reading frame 30##BC009768|C20orf30|29058|chromosome 20 open reading frame 30##BC009770|C20orf30|29058|chromosome 20 open reading frame 30##AF161392|C20orf30|29058|chromosome 20 open reading frame 30##BC009769|C20orf30|29058|chromosome 20 open reading frame 30##AK315606|C20orf30|29058|chromosome 20 open reading frame 30##BC066317|C20orf30|29058|chromosome 20 open reading frame 30##AK309823|C20orf30|29058|chromosome 20 open reading frame 30##BC070212|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009923|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009924|C20orf30|29058|chromosome 20 open reading frame 30##NM_001009925|C20orf30|29058|chromosome 20 open reading frame 30##NM_014145|C20orf30|29058|chromosome 20 open reading frame 30##CR536501|PCNA|5111|proliferating cell nuclear antigen##CR541799|PCNA|5111|proliferating cell nuclear antigen##DQ891403|PCNA|5111|proliferating cell nuclear antigen##DQ894581|PCNA|5111|proliferating cell nuclear antigen##M15796|PCNA|5111|proliferating cell nuclear antigen##BC000491|PCNA|5111|proliferating cell nuclear antigen##BC062439|PCNA|5111|proliferating cell nuclear antigen##D28458|PCNA|5111|proliferating cell nuclear antigen##AK313286|PCNA|5111|proliferating cell nuclear antigen##NM_182649|PCNA|5111|proliferating cell nuclear antigen##AK300558|PCNA|5111|proliferating cell nuclear antigen##NM_002592|PCNA|5111|proliferating cell nuclear antigen	0.995492	0.0	denovo_WM_7:-16:0.948
chr3	139896999	139897156	reg1016441.p1	3.738	+	AJ278018 BC103496 BC103506 BC104485 AY753303 TSC_hg19_v1_chr3_+_139654299	-242825	+	TSC_hg19_v1_chr3_+_139654026 AK315308 NM_022131 AK096432	-243059	+	TSC_hg19_v1_chr3_-_139396815 AK123208 BC034374 BC036218 NM_001200047 NM_178177	-500249	-	NM_152616 AK097416 AK310536 BC130472 BC130474 AF521868	499882	+	TSC_hg19_v1_chr3_+_140660687 NM_001104647 NM_018155 AK001480 AL136803 BC014064 BC019859 BC036272 AK296785 AB528573 EU831411 EU831504	763690	+	TSC_hg19_v1_chr3_+_140770412 BC051354	873401	+	AJ278018|CLSTN2|64084|calsyntenin 2##BC103496|CLSTN2|64084|calsyntenin 2##BC103506|CLSTN2|64084|calsyntenin 2##BC104485|CLSTN2|64084|calsyntenin 2##AY753303|CLSTN2|64084|calsyntenin 2##AK315308|CLSTN2|64084|calsyntenin 2##NM_022131|CLSTN2|64084|calsyntenin 2##AK096432|CLSTN2|64084|calsyntenin 2##AK123208|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC034374|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##BC036218|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_001200047|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_178177|NMNAT3|349565|nicotinamide nucleotide adenylyltransferase 3##NM_152616|TRIM42|287015|tripartite motif containing 42##AK097416|TRIM42|287015|tripartite motif containing 42##AK310536|TRIM42|287015|tripartite motif containing 42##BC130472|TRIM42|287015|tripartite motif containing 42##BC130474|TRIM42|287015|tripartite motif containing 42##AF521868|TRIM42|287015|tripartite motif containing 42##NM_001104647|SLC25A36|55186|solute carrier family 25, member 36##NM_018155|SLC25A36|55186|solute carrier family 25, member 36##AK001480|SLC25A36|55186|solute carrier family 25, member 36##AL136803|SLC25A36|55186|solute carrier family 25, member 36##BC014064|SLC25A36|55186|solute carrier family 25, member 36##BC019859|SLC25A36|55186|solute carrier family 25, member 36##BC036272|SLC25A36|55186|solute carrier family 25, member 36##AK296785|SLC25A36|55186|solute carrier family 25, member 36##EU831411|SLC25A36|55186|solute carrier family 25, member 36##EU831504|SLC25A36|55186|solute carrier family 25, member 36##BC051354|SPSB4|92369|splA/ryanodine receptor domain and SOCS box containing 4	0.828466	0.0	denovo_WM_7:5:0.550	denovo_WM_7:7:0.278
chr4	87948380	87948538	reg1012948.p1	3.738	+	TSC_hg19_v1_chr4_+_87928422 L13773 BC114930 NM_005935 AK296243 L25050 AB385236	-20138	+	TSC_hg19_v1_chr4_+_87857481 L13743	-90976	+	TSC_hg19_v1_chr4_+_87856199 AK296149 NM_001166693 AK300364 BC017432 AK302199	-92244	+	TSC_hg19_v1_chr4_+_87968211 AF177238 AF177239	19792	+	BC041901 TSC_hg19_v1_chr4_-_88141661 BX640727 BX538173 NM_020803 CR749265 BX640744 BX647454 BC041384	193203	-	HQ258364 AY268355 BC112303 BC112305 AB073347 AK292784 AY186249 AY186250 NM_001136230 NM_178135 AY358575	295566	-	L13773|AFF1|4299|AF4/FMR2 family, member 1##BC114930|AFF1|4299|AF4/FMR2 family, member 1##NM_005935|AFF1|4299|AF4/FMR2 family, member 1##AK296243|AFF1|4299|AF4/FMR2 family, member 1##L25050|AFF1|4299|AF4/FMR2 family, member 1##AK296149|AFF1|4299|AF4/FMR2 family, member 1##NM_001166693|AFF1|4299|AF4/FMR2 family, member 1##AK300364|AFF1|4299|AF4/FMR2 family, member 1##BC017432|AFF1|4299|AF4/FMR2 family, member 1##AF177238|AFF1|4299|AF4/FMR2 family, member 1##AF177239|AFF1|4299|AF4/FMR2 family, member 1##BC041901|KLHL8|57563|kelch-like 8 (Drosophila)##BX640727|KLHL8|57563|kelch-like 8 (Drosophila)##BX538173|KLHL8|57563|kelch-like 8 (Drosophila)##NM_020803|KLHL8|57563|kelch-like 8 (Drosophila)##CR749265|KLHL8|57563|kelch-like 8 (Drosophila)##BX640744|KLHL8|57563|kelch-like 8 (Drosophila)##BX647454|KLHL8|57563|kelch-like 8 (Drosophila)##BC041384|KLHL8|57563|kelch-like 8 (Drosophila)##HQ258364|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY268355|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112303|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##BC112305|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AB073347|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AK292784|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186249|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY186250|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_001136230|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##NM_178135|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13##AY358575|HSD17B13|345275|hydroxysteroid (17-beta) dehydrogenase 13	0.0	0.0	
chr5	145876465	145876565	reg1016824.p2	3.738	+	TSC_hg19_v1_chr5_+_145826895 NM_001040006 NM_006706 AK304319 BC006109 BC014151 BC062351 AK126455 BC111727 AB209910 AB464301 AF017789	-49621	+	BC104923 BC112207 NM_002700 AB464668 EU446649 HQ258176	-157885	+	TSC_hg19_v1_chr5_+_145583167 BC009537 BX647384 NM_018989 BC029648	-293349	+	AB463658 AY351676 NM_194251 AK122627	19198	-	CU689232 DQ891785 DQ894969 TSC_hg19_v1_chr5_-_146257712	381159	-	AK314810 M64930 NM_004576 AK056192 NM_181675 AK289717 BX647887 NM_001127381	381784	-	NM_001040006|TCERG1|10915|transcription elongation regulator 1##NM_006706|TCERG1|10915|transcription elongation regulator 1##AK304319|TCERG1|10915|transcription elongation regulator 1##BC006109|TCERG1|10915|transcription elongation regulator 1##BC014151|TCERG1|10915|transcription elongation regulator 1##BC062351|TCERG1|10915|transcription elongation regulator 1##AK126455|TCERG1|10915|transcription elongation regulator 1##BC111727|TCERG1|10915|transcription elongation regulator 1##AB209910|TCERG1|10915|transcription elongation regulator 1##AF017789|TCERG1|10915|transcription elongation regulator 1##BC104923|POU4F3|5459|POU class 4 homeobox 3##BC112207|POU4F3|5459|POU class 4 homeobox 3##NM_002700|POU4F3|5459|POU class 4 homeobox 3##EU446649|POU4F3|5459|POU class 4 homeobox 3##HQ258176|POU4F3|5459|POU class 4 homeobox 3##BC009537|RBM27|54439|RNA binding motif protein 27##BX647384|RBM27|54439|RNA binding motif protein 27##NM_018989|RBM27|54439|RNA binding motif protein 27##BC029648|RBM27|54439|RNA binding motif protein 27##AY351676|GPR151|134391|G protein-coupled receptor 151##NM_194251|GPR151|134391|G protein-coupled receptor 151##DQ891785|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##DQ894969|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##AK314810|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##M64930|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_004576|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##AK056192|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_181675|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##AK289717|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##BX647887|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta##NM_001127381|PPP2R2B|5521|protein phosphatase 2, regulatory subunit B, beta	1.378385	0.0	
chr5	78024080	78024154	reg1016737.p1	3.738	+	TSC_hg19_v1_chr5_-_77944584 NM_005779	-79551	-	CR936660 TSC_hg19_v1_chr5_-_77845052	-179094	-	TSC_hg19_v1_chr5_-_77806191 AK125227	-217921	-	J05225 TSC_hg19_v1_chr5_-_78281101	256971	-	AK290865 TSC_hg19_v1_chr5_-_78281134	257016	-	TSC_hg19_v1_chr5_-_78281142 AK314903	257029	-	NM_005779|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##CR936660|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##AK125227|LHFPL2|10184|lipoma HMGIC fusion partner-like 2##J05225|ARSB|411|arylsulfatase B##AK290865|ARSB|411|arylsulfatase B##AK314903|ARSB|411|arylsulfatase B	0.0	0.0	
chr10	14035716	14035826	reg1013959.p1	3.737	+	TSC_hg19_v1_chr10_-_13749648 AK057828	-286082	-	TSC_hg19_v1_chr10_+_13628964 AK314814 BC002572 U51990 BC000794	-406784	+	NM_003675 TSC_hg19_v1_chr10_+_13628948	-406828	+	TSC_hg19_v1_chr10_-_14050453 AK001072	14721	-	AK289693 NM_018027 AB037715 BC151244 TSC_hg19_v1_chr10_-_14372894	337079	-	TSC_hg19_v1_chr10_-_14646259 BC064407	610546	-	AK057828|FRMD4A|55691|FERM domain containing 4A##AK314814|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC002572|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##U51990|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##BC000794|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##NM_003675|PRPF18|8559|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)##AK001072|FRMD4A|55691|FERM domain containing 4A##AK289693|FRMD4A|55691|FERM domain containing 4A##NM_018027|FRMD4A|55691|FERM domain containing 4A##AB037715|FRMD4A|55691|FERM domain containing 4A##BC151244|FRMD4A|55691|FERM domain containing 4A##BC064407|FAM107B|83641|family with sequence similarity 107, member B	0.739983	0.0	denovo_WM_7:75:0.523
chr12	102311652	102311832	reg1003406.p2	3.737	+	TSC_hg19_v1_chr12_+_102271468 AK297785 AK094923 CU676248	-40284	+	TSC_hg19_v1_chr12_+_102271152 NM_018370 BC018435	-40624	+	AK056137 TSC_hg19_v1_chr12_-_102224637 BC131787 BC071687 AY687932 BC002779 BC094884 AM085438 NM_024312	-87156	-	AB587430 CR457171 CU679841 TSC_hg19_v1_chr12_-_102455761	144008	-	TSC_hg19_v1_chr12_-_102455791 BC010889	144035	-	TSC_hg19_v1_chr12_-_102455912 AK314970 AK223339 AF151874 AF155655 NM_016053	144119	-	AK297785|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK094923|DRAM1|55332|DNA-damage regulated autophagy modulator 1##NM_018370|DRAM1|55332|DNA-damage regulated autophagy modulator 1##BC018435|DRAM1|55332|DNA-damage regulated autophagy modulator 1##AK056137|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC131787|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC071687|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AY687932|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC002779|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##BC094884|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##AM085438|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##NM_024312|GNPTAB|79158|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits##CR457171|CCDC53|51019|coiled-coil domain containing 53##BC010889|CCDC53|51019|coiled-coil domain containing 53##AK314970|CCDC53|51019|coiled-coil domain containing 53##AK223339|CCDC53|51019|coiled-coil domain containing 53##AF151874|CCDC53|51019|coiled-coil domain containing 53##AF155655|CCDC53|51019|coiled-coil domain containing 53##NM_016053|CCDC53|51019|coiled-coil domain containing 53	0.0	0.0	
chr15	93440252	93440432	reg1016066.p1	3.737	+	BC110328 TSC_hg19_v1_chr15_-_93277463	-162953	-	BC045729 TSC_hg19_v1_chr15_-_93198980 BC060873 AK075564 NM_207446	-241463	-	AK057393 NM_153040	-425436	+	AF006514 TSC_hg19_v1_chr15_+_93443553 NM_001042572 NM_001271 AK292850 BC107885	3144	+	TSC_hg19_v1_chr15_+_93443573 BC007347 BC020810	3238	+	AK295909 TSC_hg19_v1_chr15_+_93447798	7418	+	BC110328|FAM174B|400451|family with sequence similarity 174, member B##BC045729|FAM174B|400451|family with sequence similarity 174, member B##BC060873|FAM174B|400451|family with sequence similarity 174, member B##AK075564|FAM174B|400451|family with sequence similarity 174, member B##NM_207446|FAM174B|400451|family with sequence similarity 174, member B##AK057393|C15orf32|145858|chromosome 15 open reading frame 32##NM_153040|C15orf32|145858|chromosome 15 open reading frame 32##AF006514|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001042572|CHD2|1106|chromodomain helicase DNA binding protein 2##NM_001271|CHD2|1106|chromodomain helicase DNA binding protein 2##AK292850|CHD2|1106|chromodomain helicase DNA binding protein 2##BC107885|CHD2|1106|chromodomain helicase DNA binding protein 2##BC007347|CHD2|1106|chromodomain helicase DNA binding protein 2##BC020810|CHD2|1106|chromodomain helicase DNA binding protein 2##AK295909|CHD2|1106|chromodomain helicase DNA binding protein 2	1.006328	0.0	
chr16	28802223	28802331	reg1019889.p1	3.737	+	BC157849 AB527254 DQ891632 DQ894822 TSC_hg19_v1_chr16_+_28723065	-79255	+	BC107692 NM_001037808 NM_003752 TSC_hg19_v1_chr16_+_28722786 AK301183 NM_001099661 AK301233 AK304500 AK055366 AK299421 AK303790 BC001571 BC000533 AY762099 AK293264 AK000739 BC071705	-79458	+	AK292155 NM_001199142 BC157842	-102344	+	TSC_hg19_v1_chr16_+_28834364 AK289981	32088	+	TSC_hg19_v1_chr16_+_28834372 BC068012	32111	+	TSC_hg19_v1_chr16_+_28834434 AJ317970 AJ317971 AJ317972 AJ317973 AJ317974 NM_007245 NM_145714 NM_148414 NM_148415 NM_148416 BC136584 BC144269	32149	+	BC157849|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ891632|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##DQ894822|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC107692|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001037808|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_003752|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK301183|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001099661|EIF3CL|728689|eukaryotic translation initiation factor 3, subunit C-like##AK301233|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK304500|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK055366|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK299421|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK303790|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC001571|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC000533|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AY762099|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK293264|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK000739|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC071705|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK292155|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##NM_001199142|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##BC157842|EIF3C|8663|eukaryotic translation initiation factor 3, subunit C##AK289981|ATXN2L|11273|ataxin 2-like##BC068012|ATXN2L|11273|ataxin 2-like##AJ317970|ATXN2L|11273|ataxin 2-like##AJ317971|ATXN2L|11273|ataxin 2-like##AJ317972|ATXN2L|11273|ataxin 2-like##AJ317973|ATXN2L|11273|ataxin 2-like##AJ317974|ATXN2L|11273|ataxin 2-like##NM_007245|ATXN2L|11273|ataxin 2-like##NM_145714|ATXN2L|11273|ataxin 2-like##NM_148414|ATXN2L|11273|ataxin 2-like##NM_148415|ATXN2L|11273|ataxin 2-like##NM_148416|ATXN2L|11273|ataxin 2-like##BC136584|ATXN2L|11273|ataxin 2-like##BC144269|ATXN2L|11273|ataxin 2-like	0.993792	0.0	denovo_WM_7:-22:0.248	denovo_WM_7:-23:0.248	denovo_WM_7:-24:0.248	denovo_WM_7:-25:0.248
chr19	39253693	39253780	reg1016815.p1	3.737	+	AK127398 NM_144691	-18623	-	TSC_hg19_v1_chr19_-_39227632 AK125713	-26114	-	AK023756 TSC_hg19_v1_chr19_+_39155341	-98461	+	U06643 BC061588 BC073743 L07769 NM_002307	10414	-	L07769 NM_001042507 BC061588 BC073743 U06643	26115	+	AK296194 BT007032 CR536544 AF014838 U82953 BC034750 BC003661 BC005146 TSC_hg19_v1_chr19_-_39303586 AB006781 AK290269 AK296604	49817	-	AK127398|CAPN12|147968|calpain 12##NM_144691|CAPN12|147968|calpain 12##AK125713|CAPN12|147968|calpain 12##U06643|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##BC061588|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##BC073743|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##L07769|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##NM_002307|LGALS7|3963|lectin, galactoside-binding, soluble, 7##L07769|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##NM_001042507|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##BC061588|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##BC073743|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##U06643|LGALS7B|653499|lectin, galactoside-binding, soluble, 7B##AK296194|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BT007032|LGALS4|3960|lectin, galactoside-binding, soluble, 4##CR536544|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AF014838|LGALS4|3960|lectin, galactoside-binding, soluble, 4##U82953|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BC034750|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BC003661|LGALS4|3960|lectin, galactoside-binding, soluble, 4##BC005146|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AB006781|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AK290269|LGALS4|3960|lectin, galactoside-binding, soluble, 4##AK296604|LGALS4|3960|lectin, galactoside-binding, soluble, 4	0.994087	0.0	denovo_WM_7:37:0.814
chr4	6329118	6329215	reg1017470.p1	3.737	+	TSC_hg19_v1_chr4_+_6271608 AK295986 BC030130 AK312897	-57540	+	Y18064 TSC_hg19_v1_chr4_+_6271588	-57572	+	TSC_hg19_v1_chr4_+_6271578 AF084481 NM_001145853 NM_006005	-57598	+	AB590545 AK093115 AX747932 NM_181876	54418	-	BC032954 NM_001206996	93678	-	AF086924 TSC_hg19_v1_chr4_-_6474082	144879	-	AK295986|WFS1|7466|Wolfram syndrome 1 (wolframin)##BC030130|WFS1|7466|Wolfram syndrome 1 (wolframin)##AK312897|WFS1|7466|Wolfram syndrome 1 (wolframin)##Y18064|WFS1|7466|Wolfram syndrome 1 (wolframin)##AF084481|WFS1|7466|Wolfram syndrome 1 (wolframin)##NM_001145853|WFS1|7466|Wolfram syndrome 1 (wolframin)##NM_006005|WFS1|7466|Wolfram syndrome 1 (wolframin)##AK093115|PPP2R2C|5522|protein phosphatase 2, regulatory subunit B, gamma##NM_181876|PPP2R2C|5522|protein phosphatase 2, regulatory subunit B, gamma##BC032954|PPP2R2C|5522|protein phosphatase 2, regulatory subunit B, gamma##NM_001206996|PPP2R2C|5522|protein phosphatase 2, regulatory subunit B, gamma##AF086924|PPP2R2C|5522|protein phosphatase 2, regulatory subunit B, gamma	0.0	0.999121	CTCF.p2:19:0.999
chr5	108017170	108017266	reg1014764.p1	3.737	+	BC063316 NM_001163315	-299420	-	TSC_hg19_v1_chr5_-_107717106 AK126722	-300088	-	AK308672 NM_001962 U26403	-1010628	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	46762	-	AK293376 J03358 NM_005246 AK296874	66344	+	TSC_hg19_v1_chr5_+_108084650 AK299855 BC058030	67454	+	BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AB593118|HP07349|100652853|uncharacterized protein HP07349##AK293376|FER|2241|fer (fps/fes related) tyrosine kinase##J03358|FER|2241|fer (fps/fes related) tyrosine kinase##NM_005246|FER|2241|fer (fps/fes related) tyrosine kinase##AK296874|FER|2241|fer (fps/fes related) tyrosine kinase##AK299855|FER|2241|fer (fps/fes related) tyrosine kinase##BC058030|FER|2241|fer (fps/fes related) tyrosine kinase	0.0	0.0	
chr6	151136399	151136515	reg1016230.p1	3.737	+	NM_001029884 AK293288 TSC_hg19_v1_chr6_+_150921038	-215437	+	AY259176 AY259177 NM_001164694 NM_001164695 NM_203395 AY957659 AY957660 AY424901 AY424902 BC056253 CU691140 AK129950 AY957662	-446299	+	TSC_hg19_v1_chr6_+_150464179 NM_030949 BC015773 AF308297 DQ892197 DQ895392	-672216	+	NM_001242767 NM_001242769 NM_015440 TSC_hg19_v1_chr6_+_151186837 AY374130 AY374131	50375	+	TSC_hg19_v1_chr6_+_151186884 BC136685 BC144368 BC144369 AB127387	50464	+	TSC_hg19_v1_chr6_+_151187064 AL117452	50644	+	NM_001029884|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AK293288|PLEKHG1|57480|pleckstrin homology domain containing, family G (with RhoGef domain) member 1##AY259176|IYD|389434|iodotyrosine deiodinase##AY259177|IYD|389434|iodotyrosine deiodinase##NM_001164694|IYD|389434|iodotyrosine deiodinase##NM_001164695|IYD|389434|iodotyrosine deiodinase##NM_203395|IYD|389434|iodotyrosine deiodinase##AY957659|IYD|389434|iodotyrosine deiodinase##AY957660|IYD|389434|iodotyrosine deiodinase##AY424901|IYD|389434|iodotyrosine deiodinase##AY424902|IYD|389434|iodotyrosine deiodinase##BC056253|IYD|389434|iodotyrosine deiodinase##AK129950|IYD|389434|iodotyrosine deiodinase##AY957662|IYD|389434|iodotyrosine deiodinase##NM_030949|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##BC015773|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##AF308297|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ892197|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##DQ895392|PPP1R14C|81706|protein phosphatase 1, regulatory (inhibitor) subunit 14C##NM_001242767|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_001242769|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##NM_015440|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374130|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AY374131|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC136685|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144368|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##BC144369|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AB127387|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like##AL117452|MTHFD1L|25902|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	0.0	0.79502	CTCF.p2:0:0.795
chr6	31875268	31875334	reg1015896.p1	3.737	+	BC043609 NM_181842	-5533	-	AK298311 NM_001178063	-6526	+	TSC_hg19_v1_chr6_-_31865465 AK056936 NM_006709 NM_025256	-9815	-	TSC_hg19_v1_chr6_+_31895301 NM_000063 NM_001145903	19975	+	TSC_hg19_v1_chr6_+_31895493 AK312581 AK304045 BC029781 AK300892 X04481 AK307930 AK222537 AK300930 BC043484 AK222783	20173	+	TSC_hg19_v1_chr6_+_31913718 NM_001710 AK304042	38428	+	BC043609|ZBTB12|221527|zinc finger and BTB domain containing 12##NM_181842|ZBTB12|221527|zinc finger and BTB domain containing 12##AK298311|C2|717|complement component 2##NM_001178063|C2|717|complement component 2##AK056936|EHMT2|10919|euchromatic histone-lysine N-methyltransferase 2##NM_006709|EHMT2|10919|euchromatic histone-lysine N-methyltransferase 2##NM_025256|EHMT2|10919|euchromatic histone-lysine N-methyltransferase 2##NM_000063|C2|717|complement component 2##NM_001145903|C2|717|complement component 2##AK312581|C2|717|complement component 2##BC029781|C2|717|complement component 2##AK300892|C2|717|complement component 2##X04481|C2|717|complement component 2##AK307930|C2|717|complement component 2##AK222537|C2|717|complement component 2##AK300930|C2|717|complement component 2##BC043484|C2|717|complement component 2##AK222783|C2|717|complement component 2##NM_001710|CFB|629|complement factor B##AK304042|CFB|629|complement factor B	0.999671	0.0	
chr7	101530584	101530704	reg1019083.p2	3.737	+	M74099 NM_181552	-69763	+	TSC_hg19_v1_chr7_+_101459285 NM_001202543 NM_001202544 NM_001202545 NM_001913 NM_181500 AK222832 AK303151 NM_001202546 AK125097 BC066592 L12579 AK297548 BC012323 AK122726 BC025422 AB462994	-71435	+	BC002778 NM_138403	-258069	-	TSC_hg19_v1_chr7_+_101928390 NM_020979	397753	+	TSC_hg19_v1_chr7_+_101928431 AB000520	397799	+	NM_001146210	466244	-	M74099|CUX1|1523|cut-like homeobox 1##NM_181552|CUX1|1523|cut-like homeobox 1##NM_001202543|CUX1|1523|cut-like homeobox 1##NM_001202544|CUX1|1523|cut-like homeobox 1##NM_001202545|CUX1|1523|cut-like homeobox 1##NM_001913|CUX1|1523|cut-like homeobox 1##NM_181500|CUX1|1523|cut-like homeobox 1##AK222832|CUX1|1523|cut-like homeobox 1##AK303151|CUX1|1523|cut-like homeobox 1##NM_001202546|CUX1|1523|cut-like homeobox 1##AK125097|CUX1|1523|cut-like homeobox 1##BC066592|CUX1|1523|cut-like homeobox 1##L12579|CUX1|1523|cut-like homeobox 1##AK297548|CUX1|1523|cut-like homeobox 1##BC012323|CUX1|1523|cut-like homeobox 1##AK122726|CUX1|1523|cut-like homeobox 1##BC025422|CUX1|1523|cut-like homeobox 1##BC002778|MYL10|93408|myosin, light chain 10, regulatory##NM_138403|MYL10|93408|myosin, light chain 10, regulatory##NM_020979|SH2B2|10603|SH2B adaptor protein 2##AB000520|SH2B2|10603|SH2B adaptor protein 2##NM_001146210|SPDYE6|729597|speedy homolog E6 (Xenopus laevis)	1.758154	0.0	denovo_WM_7:-45:0.681	denovo_WM_7:-74:0.686
chr10	109964505	109964628	reg1005632.p2	3.736	+	AB384862 AF284756 AY099452 AY099453 BC131597 EU281343 EU281344 AB209142 AK289797 AK125464 NM_001013031 NM_001206569 NM_001206570 NM_001206571 NM_001206572 NM_052918	-1040190	-	TSC_hg19_v1_chr10_-_108459000 AK123752	-1505507	-	BC117417 TSC_hg19_v1_chr10_+_106401047	-3563521	+	BC007579 AK304367 TSC_hg19_v1_chr10_-_111683217 AK289436 AL833411	1718643	-	TSC_hg19_v1_chr10_-_111683246 AK093693 NM_001167604 NM_020383	1718711	-	NM_019903 AB209810 BC057285	1801215	+	AF284756|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099452|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AY099453|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC131597|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281343|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##EU281344|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AB209142|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK289797|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK125464|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001013031|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206569|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206570|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206571|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_001206572|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##NM_052918|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##AK123752|SORCS1|114815|sortilin-related VPS10 domain containing receptor 1##BC117417|SORCS3|22986|sortilin-related VPS10 domain containing receptor 3##BC007579|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK304367|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK289436|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AL833411|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##AK093693|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_001167604|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_020383|XPNPEP1|7511|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble##NM_019903|ADD3|120|adducin 3 (gamma)##AB209810|ADD3|120|adducin 3 (gamma)##BC057285|ADD3|120|adducin 3 (gamma)	1.959136	0.0	denovo_WM_7:36:0.933
chr10	111985590	111985671	reg1017720.p1	3.736	+	BC012907 NM_001008541	-15642	+	TSC_hg19_v1_chr10_+_111967381 BC035128 NM_130439	-18271	+	AK291488 TSC_hg19_v1_chr10_+_111767988 U37122 BC043143	-217663	+	TSC_hg19_v1_chr10_+_111985824 AK303949 NM_005962 CR536576 AK309718	191	+	BC039110 TSC_hg19_v1_chr10_-_112064679 AK314013 AF107463	78963	-	TSC_hg19_v1_chr10_-_112064705 BC011234 NM_005871	79070	-	BC012907|MXI1|4601|MAX interactor 1##NM_001008541|MXI1|4601|MAX interactor 1##BC035128|MXI1|4601|MAX interactor 1##NM_130439|MXI1|4601|MAX interactor 1##AK291488|ADD3|120|adducin 3 (gamma)##U37122|ADD3|120|adducin 3 (gamma)##BC043143|ADD3|120|adducin 3 (gamma)##AK303949|MXI1|4601|MAX interactor 1##NM_005962|MXI1|4601|MAX interactor 1##CR536576|MXI1|4601|MAX interactor 1##AK309718|MXI1|4601|MAX interactor 1##BC039110|SMNDC1|10285|survival motor neuron domain containing 1##AK314013|SMNDC1|10285|survival motor neuron domain containing 1##AF107463|SMNDC1|10285|survival motor neuron domain containing 1##BC011234|SMNDC1|10285|survival motor neuron domain containing 1##NM_005871|SMNDC1|10285|survival motor neuron domain containing 1	0.0	0.0	
chr10	125823407	125823503	reg1014610.p1	3.736	+	BC137492 BC146862 AY358565 NM_198148	-171959	-	AJ505757 NM_153442 BC112011 BC113462	-397578	+	TSC_hg19_v1_chr10_+_124914364 AB463452 AB590162 CU692616 DQ891852 DQ895042	-909099	+	TSC_hg19_v1_chr10_-_125851923 BC027908 AB011170 AK294961 NM_014863 NM_015892	28444	-	BC050540 TSC_hg19_v1_chr10_-_125853115 AK299546 CR749804	29698	-	TSC_hg19_v1_chr10_-_126107492 M12267 M23204 BC000964 AB208817 BC016928 AK296032 AK312561 AK315947	284018	-	BC137492|CPXM2|119587|carboxypeptidase X (M14 family), member 2##BC146862|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AY358565|CPXM2|119587|carboxypeptidase X (M14 family), member 2##NM_198148|CPXM2|119587|carboxypeptidase X (M14 family), member 2##AJ505757|GPR26|2849|G protein-coupled receptor 26##NM_153442|GPR26|2849|G protein-coupled receptor 26##BC112011|GPR26|2849|G protein-coupled receptor 26##BC113462|GPR26|2849|G protein-coupled receptor 26##DQ891852|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##DQ895042|BUB3|9184|budding uninhibited by benzimidazoles 3 homolog (yeast)##BC027908|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AB011170|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##AK294961|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_014863|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##NM_015892|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##BC050540|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##CR749804|CHST15|51363|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15##M12267|OAT|4942|ornithine aminotransferase##M23204|OAT|4942|ornithine aminotransferase##BC000964|OAT|4942|ornithine aminotransferase##AB208817|OAT|4942|ornithine aminotransferase##BC016928|OAT|4942|ornithine aminotransferase##AK296032|OAT|4942|ornithine aminotransferase##AK312561|OAT|4942|ornithine aminotransferase##AK315947|OAT|4942|ornithine aminotransferase	0.0	0.0	
chr12	70862731	70862841	reg1017209.p2	3.736	+	TSC_hg19_v1_chr12_+_70861858 BC031864	-918	+	TSC_hg19_v1_chr12_+_70760230 NM_014505 AF160967 BC042446 BC050621 AF215891 AF207992	-102520	+	AK307479 NM_001199303 AK095789	-225275	+	BC101679 BC113463 BC143356 BC143360 NM_001206971 NM_001206972 NM_002837 X54131	140836	-	AB587339 TSC_hg19_v1_chr12_-_71031179 AK128562 BC051329 BX647238 CR749546 BX648245 AK126121 NM_001109754	168410	-	BC119777 BC122866 BC110900 TSC_hg19_v1_chr12_-_71148231	285363	-	NM_014505|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF160967|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC042446|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##BC050621|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF215891|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AF207992|KCNMB4|27345|potassium large conductance calcium-activated channel, subfamily M, beta member 4##AK307479|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##NM_001199303|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##AK095789|CNOT2|4848|CCR4-NOT transcription complex, subunit 2##BC101679|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC113463|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC143356|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC143360|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001206971|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001206972|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_002837|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##X54131|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##AK128562|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC051329|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BX647238|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##CR749546|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BX648245|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##AK126121|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##NM_001109754|PTPRB|5787|protein tyrosine phosphatase, receptor type, B##BC119777|PTPRR|5801|protein tyrosine phosphatase, receptor type, R##BC122866|PTPRR|5801|protein tyrosine phosphatase, receptor type, R##BC110900|PTPRR|5801|protein tyrosine phosphatase, receptor type, R	1.964063	0.0	denovo_WM_7:26:0.407	denovo_WM_7:27:0.317	denovo_WM_7:45:0.468
chr14	50063875	50064055	reg1000231.p3	3.736	+	BC032813 BC035313 L31610 U14973 AK026649 BC015974 NM_001030001 NM_001032 AB055780 AK307833 TSC_hg19_v1_chr14_-_50053095	-10872	-	AK309211 NM_001113498	-1919809	-	BC028193 NM_182830	-2251550	-	NM_152329 NM_203467 TSC_hg19_v1_chr14_+_50065473 BC030142 BX648029	1495	+	TSC_hg19_v1_chr14_-_50087339 BC003145 BC000741 BC070207 AK311959 AB063609 NM_001001 BC107716	23379	-	TSC_hg19_v1_chr14_+_50087493 NM_002408 BC006390 BC018912 AK075199 AK056167 AK293231 DQ892713 DQ896859	23742	+	BC032813|RPS29|6235|ribosomal protein S29##BC035313|RPS29|6235|ribosomal protein S29##L31610|RPS29|6235|ribosomal protein S29##U14973|RPS29|6235|ribosomal protein S29##AK026649|RPS29|6235|ribosomal protein S29##BC015974|RPS29|6235|ribosomal protein S29##NM_001030001|RPS29|6235|ribosomal protein S29##NM_001032|RPS29|6235|ribosomal protein S29##AB055780|RPS29|6235|ribosomal protein S29##AK309211|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_001113498|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##BC028193|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_182830|MDGA2|161357|MAM domain containing glycosylphosphatidylinositol anchor 2##NM_152329|LRR1|122769|leucine rich repeat protein 1##NM_203467|LRR1|122769|leucine rich repeat protein 1##BC030142|LRR1|122769|leucine rich repeat protein 1##BX648029|LRR1|122769|leucine rich repeat protein 1##BC003145|RPL36AL|6166|ribosomal protein L36a-like##BC000741|RPL36AL|6166|ribosomal protein L36a-like##BC070207|RPL36AL|6166|ribosomal protein L36a-like##AK311959|RPL36AL|6166|ribosomal protein L36a-like##AB063609|RPL36AL|6166|ribosomal protein L36a-like##NM_001001|RPL36AL|6166|ribosomal protein L36a-like##BC107716|RPL36AL|6166|ribosomal protein L36a-like##NM_002408|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC006390|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##BC018912|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK075199|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK056167|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##AK293231|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ892713|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase##DQ896859|MGAT2|4247|mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase	0.0	0.0	
chr15	29562435	29562610	reg1002563.p2	3.736	+	TSC_hg19_v1_chr15_-_29562011 AK056957 AF490510 NM_138704	-493	-	TSC_hg19_v1_chr15_-_29561989 BC041166 BC053999 BC035458	-552	-	NM_001130414 NM_005503 AF047348 BC082986	-348673	+	NM_015307	300404	-	AK304758 TSC_hg19_v1_chr15_-_30114336	551820	-	TSC_hg19_v1_chr15_-_30114696 BC111712 BC036090 NM_003257 NM_175610	552101	-	AK056957|NDNL2|56160|necdin-like 2##AF490510|NDNL2|56160|necdin-like 2##NM_138704|NDNL2|56160|necdin-like 2##BC041166|NDNL2|56160|necdin-like 2##BC053999|NDNL2|56160|necdin-like 2##BC035458|NDNL2|56160|necdin-like 2##NM_001130414|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_005503|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##AF047348|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##BC082986|APBA2|321|amyloid beta (A4) precursor protein-binding, family A, member 2##NM_015307|FAM189A1|23359|family with sequence similarity 189, member A1##AK304758|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC111712|TJP1|7082|tight junction protein 1 (zona occludens 1)##BC036090|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_003257|TJP1|7082|tight junction protein 1 (zona occludens 1)##NM_175610|TJP1|7082|tight junction protein 1 (zona occludens 1)	0.0	0.0	
chr15	41399320	41399432	reg1009626.p2	3.736	+	TSC_hg19_v1_chr15_-_41364176 AK057582	-35172	-	NM_001142776 NM_024111 TSC_hg19_v1_chr15_+_41245671 BC019625 BC001683 BC001847 AY702027	-153672	+	NM_019074 TSC_hg19_v1_chr15_+_41221537 AK313831 AK308755 AB036931 BC106950 AY358894 AB043894 AF253468	-177678	+	BC144681 AB033085 NM_017553 BC146785 TSC_hg19_v1_chr15_-_41408344	8961	-	TSC_hg19_v1_chr15_-_41408423 BC012578	9057	-	AK292524 AK302864 BC030628 NM_152596 TSC_hg19_v1_chr15_-_41522946	123528	-	AK057582|INO80|54617|INO80 homolog (S. cerevisiae)##NM_001142776|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##NM_024111|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC019625|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001683|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##BC001847|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##AY702027|CHAC1|79094|ChaC, cation transport regulator homolog 1 (E. coli)##NM_019074|DLL4|54567|delta-like 4 (Drosophila)##AK313831|DLL4|54567|delta-like 4 (Drosophila)##AK308755|DLL4|54567|delta-like 4 (Drosophila)##AB036931|DLL4|54567|delta-like 4 (Drosophila)##BC106950|DLL4|54567|delta-like 4 (Drosophila)##AY358894|DLL4|54567|delta-like 4 (Drosophila)##AB043894|DLL4|54567|delta-like 4 (Drosophila)##AF253468|DLL4|54567|delta-like 4 (Drosophila)##BC144681|INO80|54617|INO80 homolog (S. cerevisiae)##AB033085|INO80|54617|INO80 homolog (S. cerevisiae)##NM_017553|INO80|54617|INO80 homolog (S. cerevisiae)##BC146785|INO80|54617|INO80 homolog (S. cerevisiae)##BC012578|INO80|54617|INO80 homolog (S. cerevisiae)##AK292524|EXD1|161829|exonuclease 3'-5' domain containing 1##AK302864|EXD1|161829|exonuclease 3'-5' domain containing 1##BC030628|EXD1|161829|exonuclease 3'-5' domain containing 1##NM_152596|EXD1|161829|exonuclease 3'-5' domain containing 1	0.0	0.0	
chr19	45880239	45880372	reg1016394.p1	3.736	+	TSC_hg19_v1_chr19_-_45873851 NM_000400 NM_001130867	-6460	-	BC008346 TSC_hg19_v1_chr19_-_45873816 BC108255 AK303358 BC110522 BC110523	-6567	-	BC025318 NM_177417 BC062998 BC073841	-36298	+	BC032298 AY869712 BC014499 BC020259 NM_006663 TSC_hg19_v1_chr19_-_45908318	28008	-	NM_012099 U86751 BC054044 BC046141 BC108889	29278	+	AK130326 BC064913 TSC_hg19_v1_chr19_-_45909620 NM_001142502	29290	-	NM_000400|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##NM_001130867|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC008346|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC108255|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##AK303358|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC110522|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC110523|ERCC2|2068|excision repair cross-complementing rodent repair deficiency, complementation group 2##BC025318|KLC3|147700|kinesin light chain 3##NM_177417|KLC3|147700|kinesin light chain 3##BC062998|KLC3|147700|kinesin light chain 3##BC073841|KLC3|147700|kinesin light chain 3##BC032298|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##AY869712|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC014499|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC020259|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_006663|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_012099|CD3EAP|10849|CD3e molecule, epsilon associated protein##U86751|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC054044|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC046141|CD3EAP|10849|CD3e molecule, epsilon associated protein##BC108889|CD3EAP|10849|CD3e molecule, epsilon associated protein##AK130326|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##BC064913|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like##NM_001142502|PPP1R13L|10848|protein phosphatase 1, regulatory subunit 13 like	0.0	0.0	
chr5	138682839	138682971	reg1017054.p2	3.736	+	BC048106 NM_001033112 BC062718 BC039337	-4741	+	TSC_hg19_v1_chr5_+_138677571 BC007764 AF317675	-5312	+	AK024552 TSC_hg19_v1_chr5_+_138677555 AL136640 BC001716 AF151052	-5348	+	AF058317 AJ269477 CU676390 AK290789 AF170911 BC050261 TSC_hg19_v1_chr5_-_138718995 AK300935 AF098277 AK298337 AJ250807 BC019225	36066	-	TSC_hg19_v1_chr5_-_138719021 NM_005847 NM_152685	36123	-	GQ477350 DQ892627 EU176703 AK057549 AK292706 BC009931 BC021275 AF151024 NM_016459	42669	-	BC048106|PAIP2|51247|poly(A) binding protein interacting protein 2##NM_001033112|PAIP2|51247|poly(A) binding protein interacting protein 2##BC062718|PAIP2|51247|poly(A) binding protein interacting protein 2##BC039337|PAIP2|51247|poly(A) binding protein interacting protein 2##AF317675|PAIP2|51247|poly(A) binding protein interacting protein 2##AK024552|PAIP2|51247|poly(A) binding protein interacting protein 2##AL136640|PAIP2|51247|poly(A) binding protein interacting protein 2##BC001716|PAIP2|51247|poly(A) binding protein interacting protein 2##AF151052|PAIP2|51247|poly(A) binding protein interacting protein 2##AF058317|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AJ269477|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AK290789|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AF170911|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##BC050261|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AK300935|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AF098277|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AK298337|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##AJ250807|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##BC019225|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##NM_005847|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##NM_152685|SLC23A1|9963|solute carrier family 23 (nucleobase transporters), member 1##GQ477350|MZB1|51237|marginal zone B and B1 cell-specific protein##DQ892627|MZB1|51237|marginal zone B and B1 cell-specific protein##EU176703|MZB1|51237|marginal zone B and B1 cell-specific protein##AK057549|MZB1|51237|marginal zone B and B1 cell-specific protein##AK292706|MZB1|51237|marginal zone B and B1 cell-specific protein##BC009931|MZB1|51237|marginal zone B and B1 cell-specific protein##BC021275|MZB1|51237|marginal zone B and B1 cell-specific protein##AF151024|MZB1|51237|marginal zone B and B1 cell-specific protein##NM_016459|MZB1|51237|marginal zone B and B1 cell-specific protein	1.042876	0.0	
chr8	120057054	120057149	reg1018834.p1	3.736	+	AB002146 AB528441 CU688830 DQ892264 DQ895466 AK223155 AK308524 TSC_hg19_v1_chr8_-_119964125 U94332 BC011023 BC030155 NM_002546	-92881	-	TSC_hg19_v1_chr8_-_119634214 NM_001101676 NM_207506 AK311704	-422894	-	BC121818 BC124554 AK096777 TSC_hg19_v1_chr8_-_119634135	-422976	-	AK291791 NM_006438 BC103815 BC103816 AY359038 AB002631	22368	+	TSC_hg19_v1_chr8_+_120220616 BC012367 NM_052886 AY007723 AK172820 AK312030 DQ890584 DQ893743	163538	+	NM_002514 AK294289 AK312355 TSC_hg19_v1_chr8_+_120428685 AY082381 X96584 BC015028 CU677181 AB463923 DQ891179 DQ894361 CR457432	371560	+	AB002146|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ892264|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##DQ895466|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK223155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##AK308524|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##U94332|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC011023|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##BC030155|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_002546|TNFRSF11B|4982|tumor necrosis factor receptor superfamily, member 11b##NM_001101676|SAMD12|401474|sterile alpha motif domain containing 12##NM_207506|SAMD12|401474|sterile alpha motif domain containing 12##AK311704|SAMD12|401474|sterile alpha motif domain containing 12##BC121818|SAMD12|401474|sterile alpha motif domain containing 12##BC124554|SAMD12|401474|sterile alpha motif domain containing 12##AK096777|SAMD12|401474|sterile alpha motif domain containing 12##AK291791|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##NM_006438|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103815|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC103816|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AY359038|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##AB002631|COLEC10|10584|collectin sub-family member 10 (C-type lectin)##BC012367|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_052886|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AY007723|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK172820|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##AK312030|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ890584|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##DQ893743|MAL2|114569|mal, T-cell differentiation protein 2 (gene/pseudogene)##NM_002514|NOV|4856|nephroblastoma overexpressed gene##AK294289|NOV|4856|nephroblastoma overexpressed gene##AK312355|NOV|4856|nephroblastoma overexpressed gene##AY082381|NOV|4856|nephroblastoma overexpressed gene##X96584|NOV|4856|nephroblastoma overexpressed gene##BC015028|NOV|4856|nephroblastoma overexpressed gene##DQ891179|NOV|4856|nephroblastoma overexpressed gene##DQ894361|NOV|4856|nephroblastoma overexpressed gene##CR457432|NOV|4856|nephroblastoma overexpressed gene	0.978868	0.0	denovo_WM_7:-10:0.811
chrX	129310435	129310541	reg1012681.p1	3.736	+	TSC_hg19_v1_chrX_+_129305943 BC001157 BC001704 BC009996 NM_004794 AF498959 BT007038 AK094927	-4639	+	BC111065 TSC_hg19_v1_chrX_-_129299819 NM_001130847 NM_004208 NM_145812 NM_145813	-10657	-	TSC_hg19_v1_chrX_-_129299743 AK000775 AL049703 BC139738	-10766	-	TSC_hg19_v1_chrX_-_129402874 AK000102 AL834333 AL133204 AK290373 BC051728 NM_017666	92358	-	TSC_hg19_v1_chrX_+_129473927 AK304649 AK297499 AK309433 AK296155 NM_003951 NM_022810 BC119666 BC119667 AF155809 AF155810 AF155811 AY358099	163544	+	AY288416 BC101166 BC101167 BC101168 AB529244 HQ258187 BC095502 BC126179 BC126181 NM_178471	208977	-	BC001157|RAB33A|9363|RAB33A, member RAS oncogene family##BC001704|RAB33A|9363|RAB33A, member RAS oncogene family##BC009996|RAB33A|9363|RAB33A, member RAS oncogene family##NM_004794|RAB33A|9363|RAB33A, member RAS oncogene family##AF498959|RAB33A|9363|RAB33A, member RAS oncogene family##BT007038|RAB33A|9363|RAB33A, member RAS oncogene family##AK094927|RAB33A|9363|RAB33A, member RAS oncogene family##BC111065|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_001130847|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_004208|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_145812|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##NM_145813|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AK000775|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AL049703|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##BC139738|AIFM1|9131|apoptosis-inducing factor, mitochondrion-associated, 1##AK000102|ZNF280C|55609|zinc finger protein 280C##AL834333|ZNF280C|55609|zinc finger protein 280C##AL133204|ZNF280C|55609|zinc finger protein 280C##AK290373|ZNF280C|55609|zinc finger protein 280C##BC051728|ZNF280C|55609|zinc finger protein 280C##NM_017666|ZNF280C|55609|zinc finger protein 280C##AK297499|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK309433|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AK296155|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_003951|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##NM_022810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119666|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##BC119667|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155809|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155810|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AF155811|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY358099|SLC25A14|9016|solute carrier family 25 (mitochondrial carrier, brain), member 14##AY288416|GPR119|139760|G protein-coupled receptor 119##BC101166|GPR119|139760|G protein-coupled receptor 119##BC101167|GPR119|139760|G protein-coupled receptor 119##BC101168|GPR119|139760|G protein-coupled receptor 119##HQ258187|GPR119|139760|G protein-coupled receptor 119##BC095502|GPR119|139760|G protein-coupled receptor 119##BC126179|GPR119|139760|G protein-coupled receptor 119##BC126181|GPR119|139760|G protein-coupled receptor 119##NM_178471|GPR119|139760|G protein-coupled receptor 119	0.0	0.0	
chr3	66490588	66490758	reg1019069.p2	3.735	+	TSC_hg19_v1_chr3_+_66444897 AB075504	-45714	+	NM_001164796	-219506	+	AK092495 AX747571 NM_173471	-371389	+	AF381545 BC140907 NM_015541 AY730707	60179	-	TSC_hg19_v1_chr3_-_66551436 AB050468 AK314103 BC071561	60791	-	NM_032505 AK096640 AK300397	558055	+	NM_001164796|SLC25A26|115286|solute carrier family 25, member 26##AK092495|SLC25A26|115286|solute carrier family 25, member 26##AX747571|SLC25A26|115286|solute carrier family 25, member 26##NM_173471|SLC25A26|115286|solute carrier family 25, member 26##AF381545|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC140907|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_015541|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AY730707|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AB050468|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##AK314103|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##BC071561|LRIG1|26018|leucine-rich repeats and immunoglobulin-like domains 1##NM_032505|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK096640|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8##AK300397|KBTBD8|84541|kelch repeat and BTB (POZ) domain containing 8	0.0	0.0	
chr4	38070991	38071089	reg1012820.p1	3.735	+	TSC_hg19_v1_chr4_+_37979032 AK303574	-92023	+	AF095288 BC069114 BC069400 NM_006607	-108985	+	TSC_hg19_v1_chr4_+_37892713 BC050321 BC028196 NM_015173 BC029950 AK295746	-178251	+	TSC_hg19_v1_chr4_+_38665819 NM_016531 AK313459 BC051687 BC030662 AF285837 AB024523	594786	+	AF289565 TSC_hg19_v1_chr4_-_38666549	595449	-	AY358300 AK292026 NM_001017388 NM_001195106 NM_001195107 NM_001195108 NM_030956	713559	-	AK303574|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AF095288|PTTG2|10744|pituitary tumor-transforming 2##BC069114|PTTG2|10744|pituitary tumor-transforming 2##BC069400|PTTG2|10744|pituitary tumor-transforming 2##NM_006607|PTTG2|10744|pituitary tumor-transforming 2##BC050321|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC028196|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_015173|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##BC029950|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##AK295746|TBC1D1|23216|TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1##NM_016531|KLF3|51274|Kruppel-like factor 3 (basic)##AK313459|KLF3|51274|Kruppel-like factor 3 (basic)##BC051687|KLF3|51274|Kruppel-like factor 3 (basic)##BC030662|KLF3|51274|Kruppel-like factor 3 (basic)##AF285837|KLF3|51274|Kruppel-like factor 3 (basic)##AB024523|KLF3|51274|Kruppel-like factor 3 (basic)##AF289565|FLJ13197|79667|uncharacterized FLJ13197##AY358300|TLR10|81793|toll-like receptor 10##AK292026|TLR10|81793|toll-like receptor 10##NM_001017388|TLR10|81793|toll-like receptor 10##NM_001195106|TLR10|81793|toll-like receptor 10##NM_001195107|TLR10|81793|toll-like receptor 10##NM_001195108|TLR10|81793|toll-like receptor 10##NM_030956|TLR10|81793|toll-like receptor 10	0.180037	0.0	
chr4	56405790	56405940	reg1017375.p2	3.735	+	TSC_hg19_v1_chr4_+_56262123 BC107582 AK290663 AK295289 BC104978 BC104980 AF132746 AF183409	-143627	+	TSC_hg19_v1_chr4_+_56262094 NM_018475	-143790	+	TSC_hg19_v1_chr4_+_56261819 AK123358	-144070	+	TSC_hg19_v1_chr4_-_56412988 BC126157 BC126159 AF011568 NM_004898 AK291708 AK223549	7126	-	BC034431 NM_152401	52513	-	DQ891295 DQ894479 BC012908 NM_006681 X76029 TSC_hg19_v1_chr4_-_56502465	96547	-	BC107582|TMEM165|55858|transmembrane protein 165##AK290663|TMEM165|55858|transmembrane protein 165##AK295289|TMEM165|55858|transmembrane protein 165##BC104978|TMEM165|55858|transmembrane protein 165##BC104980|TMEM165|55858|transmembrane protein 165##AF132746|TMEM165|55858|transmembrane protein 165##AF183409|TMEM165|55858|transmembrane protein 165##NM_018475|TMEM165|55858|transmembrane protein 165##BC126157|CLOCK|9575|clock homolog (mouse)##BC126159|CLOCK|9575|clock homolog (mouse)##AF011568|CLOCK|9575|clock homolog (mouse)##NM_004898|CLOCK|9575|clock homolog (mouse)##AK291708|CLOCK|9575|clock homolog (mouse)##AK223549|CLOCK|9575|clock homolog (mouse)##BC034431|PDCL2|132954|phosducin-like 2##NM_152401|PDCL2|132954|phosducin-like 2##DQ891295|NMU|10874|neuromedin U##DQ894479|NMU|10874|neuromedin U##BC012908|NMU|10874|neuromedin U##NM_006681|NMU|10874|neuromedin U##X76029|NMU|10874|neuromedin U	1.139296	0.0	denovo_WM_7:-102:0.860
chr11	94817869	94817985	reg1014996.p1	3.734	+	TSC_hg19_v1_chr11_+_94800406 AF031166	-17519	+	TSC_hg19_v1_chr11_+_94800329 BC057783 BC006181	-17583	+	NM_032102 AK309776 AK312514 AK023379 TSC_hg19_v1_chr11_+_94800281	-17759	+	TSC_hg19_v1_chr11_+_94823009 AK291673 NM_015036 BC026191 AB020637 BC071171 AB385387	5085	+	BC017296 AK096300 NM_144665 TSC_hg19_v1_chr11_-_94964367	146377	-	CU693100 AM392906 DQ891214 DQ894397 TSC_hg19_v1_chr11_-_95522648 BX647586	704724	-	AF031166|SRSF8|10929|serine/arginine-rich splicing factor 8##BC057783|SRSF8|10929|serine/arginine-rich splicing factor 8##NM_032102|SRSF8|10929|serine/arginine-rich splicing factor 8##AK312514|SRSF8|10929|serine/arginine-rich splicing factor 8##AK023379|SRSF8|10929|serine/arginine-rich splicing factor 8##AK291673|ENDOD1|23052|endonuclease domain containing 1##NM_015036|ENDOD1|23052|endonuclease domain containing 1##BC026191|ENDOD1|23052|endonuclease domain containing 1##AB020637|ENDOD1|23052|endonuclease domain containing 1##BC071171|ENDOD1|23052|endonuclease domain containing 1##BC017296|SESN3|143686|sestrin 3##AK096300|SESN3|143686|sestrin 3##NM_144665|SESN3|143686|sestrin 3##AM392906|FAM76B|143684|family with sequence similarity 76, member B##DQ891214|FAM76B|143684|family with sequence similarity 76, member B##DQ894397|FAM76B|143684|family with sequence similarity 76, member B##BX647586|FAM76B|143684|family with sequence similarity 76, member B	0.074626	0.0	
chr12	93639521	93639625	reg1019432.p1	3.734	+	TSC_hg19_v1_chr12_-_93323097 NM_003566	-316475	-	BC017837 TSC_hg19_v1_chr12_-_93323072 AK292008 AK307918	-316530	-	X78998 TSC_hg19_v1_chr12_-_93322931 L40157	-316635	-	TSC_hg19_v1_chr12_+_93771701 NM_019094 NM_199040 AK074343 AB007956 AK315778 AK223497 AF311215 BC012069 AF191649 AF191653 BC051310 AF311216 AF191650 AB385340 BT020109 BT020110 DQ892199 DQ895394 AF191651 AF191652 AF067803	132319	+	AB464336 BT006873 DQ896763 EU176463 EU176466 BC003365 TSC_hg19_v1_chr12_-_93835699 BC108704	196113	-	TSC_hg19_v1_chr12_-_93835718 D83004	196145	-	NM_003566|EEA1|8411|early endosome antigen 1##BC017837|EEA1|8411|early endosome antigen 1##AK292008|EEA1|8411|early endosome antigen 1##AK307918|EEA1|8411|early endosome antigen 1##X78998|EEA1|8411|early endosome antigen 1##L40157|EEA1|8411|early endosome antigen 1##NM_019094|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##NM_199040|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK074343|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AB007956|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK315778|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AK223497|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311215|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##BC012069|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191649|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191653|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BC051310|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF311216|NUDT4P1|440672|nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1##AF191650|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020109|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT020110|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ892199|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##DQ895394|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191651|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF191652|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##AF067803|NUDT4|11163|nudix (nucleoside diphosphate linked moiety X)-type motif 4##BT006873|UBE2N|7334|ubiquitin-conjugating enzyme E2N##DQ896763|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176463|UBE2N|7334|ubiquitin-conjugating enzyme E2N##EU176466|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC003365|UBE2N|7334|ubiquitin-conjugating enzyme E2N##BC108704|UBE2N|7334|ubiquitin-conjugating enzyme E2N##D83004|UBE2N|7334|ubiquitin-conjugating enzyme E2N	0.0	0.0	
chr18	43554197	43554279	reg1014180.p2	3.734	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	-6960	-	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-148614	+	NM_001146037	-247321	+	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	97970	-	TSC_hg19_v1_chr18_-_43668143 AK129804	113939	-	TSC_hg19_v1_chr18_-_43669608 BC003119	115361	-	AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC003119|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.0	0.997664	CTCF.p2:-2:0.998
chr2	240144176	240144288	reg1017419.p1	3.734	+	BC033168 NM_057179 BC103755 BC017907 AB528459 CU689614	-387469	+	TSC_hg19_v1_chr2_+_239335693 AF156777	-808543	+	TSC_hg19_v1_chr2_+_239335644 BC014528 NM_001040445	-808626	+	TSC_hg19_v1_chr2_-_240322657 AB006626 NM_006037	178416	-	TSC_hg19_v1_chr2_-_240322695 BC039904	178466	-	TSC_hg19_v1_chr2_-_240323341 AK308791	179116	-	BC033168|TWIST2|117581|twist homolog 2 (Drosophila)##NM_057179|TWIST2|117581|twist homolog 2 (Drosophila)##BC103755|TWIST2|117581|twist homolog 2 (Drosophila)##BC017907|TWIST2|117581|twist homolog 2 (Drosophila)##AF156777|ASB1|51665|ankyrin repeat and SOCS box containing 1##BC014528|ASB1|51665|ankyrin repeat and SOCS box containing 1##NM_001040445|ASB1|51665|ankyrin repeat and SOCS box containing 1##AB006626|HDAC4|9759|histone deacetylase 4##NM_006037|HDAC4|9759|histone deacetylase 4##BC039904|HDAC4|9759|histone deacetylase 4##AK308791|HDAC4|9759|histone deacetylase 4	0.99585	0.0	
chr6	7296351	7296468	reg1019501.p1	3.734	+	BX647723 TSC_hg19_v1_chr6_+_7108910	-187506	+	TSC_hg19_v1_chr6_+_7108184 AB019254 AB019351 AB019352	-188186	+	TSC_hg19_v1_chr6_+_7108025 BC111386 NM_001003698 NM_001003699 NM_001003700	-188374	+	BT007387 CR456961 AB464204 DQ892751 EU176743 TSC_hg19_v1_chr6_-_7313433 Z12830 AK075562 AK222762 AK222809 AK291550 AK312653 CR936719 BC007710 NM_003144	17037	-	AF414185 NM_001170692 NM_001170693 NM_205864 TSC_hg19_v1_chr6_-_7389974	93558	-	TSC_hg19_v1_chr6_+_7390042 AY094356 AK314467 BC006104 NM_031480 AK054568	93689	+	BX647723|RREB1|6239|ras responsive element binding protein 1##AB019254|RREB1|6239|ras responsive element binding protein 1##AB019351|RREB1|6239|ras responsive element binding protein 1##AB019352|RREB1|6239|ras responsive element binding protein 1##BC111386|RREB1|6239|ras responsive element binding protein 1##NM_001003698|RREB1|6239|ras responsive element binding protein 1##NM_001003699|RREB1|6239|ras responsive element binding protein 1##NM_001003700|RREB1|6239|ras responsive element binding protein 1##BT007387|SSR1|6745|signal sequence receptor, alpha##CR456961|SSR1|6745|signal sequence receptor, alpha##DQ892751|SSR1|6745|signal sequence receptor, alpha##EU176743|SSR1|6745|signal sequence receptor, alpha##Z12830|SSR1|6745|signal sequence receptor, alpha##AK075562|SSR1|6745|signal sequence receptor, alpha##AK222762|SSR1|6745|signal sequence receptor, alpha##AK222809|SSR1|6745|signal sequence receptor, alpha##AK291550|SSR1|6745|signal sequence receptor, alpha##AK312653|SSR1|6745|signal sequence receptor, alpha##CR936719|SSR1|6745|signal sequence receptor, alpha##BC007710|SSR1|6745|signal sequence receptor, alpha##NM_003144|SSR1|6745|signal sequence receptor, alpha##AF414185|CAGE1|285782|cancer antigen 1##NM_001170692|CAGE1|285782|cancer antigen 1##NM_001170693|CAGE1|285782|cancer antigen 1##NM_205864|CAGE1|285782|cancer antigen 1##AY094356|RIOK1|83732|RIO kinase 1 (yeast)##AK314467|RIOK1|83732|RIO kinase 1 (yeast)##BC006104|RIOK1|83732|RIO kinase 1 (yeast)##NM_031480|RIOK1|83732|RIO kinase 1 (yeast)##AK054568|RIOK1|83732|RIO kinase 1 (yeast)	0.0	0.0	
chr10	24738196	24738371	reg1015173.p1	3.733	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-240189	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-240495	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-754606	+	TSC_hg19_v1_chr10_+_24755441 AK300422	17161	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	17186	+	AK307604 TSC_hg19_v1_chr10_-_25012174	273890	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	0.977217	0.0	denovo_WM_7:-18:0.243	denovo_WM_7:-19:0.243	denovo_WM_7:-20:0.247	denovo_WM_7:-21:0.244
chr12	118573440	118573599	reg1015751.p1	3.733	+	TSC_hg19_v1_chr12_-_118541813 BC001437 BC028698 BC034471 NM_019086 AK000681	-31769	-	TSC_hg19_v1_chr12_-_118499892 AK295555	-73584	-	AK310892 TSC_hg19_v1_chr12_-_118498977 BC015887 AK298513 AF229181 NM_018639	-74584	-	TSC_hg19_v1_chr12_+_118573907 NM_002567 BC017396 X75252 AK226006	356	+	TSC_hg19_v1_chr12_+_118573928 BC008714 AK311927 D16111 BC018799 AK308056 BC031102 AK299414 HM131449	404	+	TSC_hg19_v1_chr12_+_118573963 AB528565 X85033	459	+	BC001437|VSIG10|54621|V-set and immunoglobulin domain containing 10##BC028698|VSIG10|54621|V-set and immunoglobulin domain containing 10##BC034471|VSIG10|54621|V-set and immunoglobulin domain containing 10##NM_019086|VSIG10|54621|V-set and immunoglobulin domain containing 10##AK000681|VSIG10|54621|V-set and immunoglobulin domain containing 10##AK295555|WSB2|55884|WD repeat and SOCS box containing 2##AK310892|WSB2|55884|WD repeat and SOCS box containing 2##BC015887|WSB2|55884|WD repeat and SOCS box containing 2##AK298513|WSB2|55884|WD repeat and SOCS box containing 2##AF229181|WSB2|55884|WD repeat and SOCS box containing 2##NM_018639|WSB2|55884|WD repeat and SOCS box containing 2##NM_002567|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC017396|PEBP1|5037|phosphatidylethanolamine binding protein 1##X75252|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK226006|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC008714|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK311927|PEBP1|5037|phosphatidylethanolamine binding protein 1##D16111|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC018799|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK308056|PEBP1|5037|phosphatidylethanolamine binding protein 1##BC031102|PEBP1|5037|phosphatidylethanolamine binding protein 1##AK299414|PEBP1|5037|phosphatidylethanolamine binding protein 1##HM131449|PEBP1|5037|phosphatidylethanolamine binding protein 1##X85033|PEBP1|5037|phosphatidylethanolamine binding protein 1	0.015145	0.0	
chr15	96300572	96300674	reg1011042.p2	3.733	+	TSC_hg19_v1_chr15_-_95870310 BC040875	-430304	-	NM_001159644 BC025708 BC111024 AK002037	-1401314	+	NM_001159643 NM_018349 AY656717 BC131527	-1459162	+	BC106083 NM_001145155 FM208183	568538	+	TSC_hg19_v1_chr15_+_96873991 BC042897 M62760 NM_021005	573354	+	AK316086 NM_001145156	575170	+	BC040875|LOC400456|400456|uncharacterized LOC400456##NM_001159644|MCTP2|55784|multiple C2 domains, transmembrane 2##BC025708|MCTP2|55784|multiple C2 domains, transmembrane 2##BC111024|MCTP2|55784|multiple C2 domains, transmembrane 2##AK002037|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_001159643|MCTP2|55784|multiple C2 domains, transmembrane 2##NM_018349|MCTP2|55784|multiple C2 domains, transmembrane 2##AY656717|MCTP2|55784|multiple C2 domains, transmembrane 2##BC131527|MCTP2|55784|multiple C2 domains, transmembrane 2##BC106083|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145155|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##FM208183|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##BC042897|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##M62760|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_021005|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##AK316086|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2##NM_001145156|NR2F2|7026|nuclear receptor subfamily 2, group F, member 2	0.4888	0.0	denovo_WM_7:-62:0.264
chr19	1113302	1113453	reg1009563.p1	3.733	+	TSC_hg19_v1_chr19_-_1111972 BC106021	-1390	-	TSC_hg19_v1_chr19_+_1104646 NM_001039848	-8740	+	TSC_hg19_v1_chr19_+_1104068 BC010157	-9285	+	TSC_hg19_v1_chr19_-_1132221 AK125139 AK296849 AK309167 NM_001100122	18872	-	TSC_hg19_v1_chr19_-_1174256 BC052799	60851	-	TSC_hg19_v1_chr19_-_1174260 AB023180	60882	-	BC106021|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_001039848|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##BC010157|GPX4|2879|glutathione peroxidase 4 (phospholipid hydroperoxidase)##AK125139|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK296849|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AK309167|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##NM_001100122|SBNO2|22904|strawberry notch homolog 2 (Drosophila)##AB023180|SBNO2|22904|strawberry notch homolog 2 (Drosophila)	0.0	0.93758	CTCF.p2:66:0.938
chr19	51304026	51304162	reg1018031.p1	3.733	+	AB463389 NM_033068	-10423	+	BC095544 BC067453 BC067454 NM_001506	-30306	+	TSC_hg19_v1_chr19_+_51226662 AY870345 AB009244 AB528595 BT019673 CU675163	-77372	+	TSC_hg19_v1_chr19_-_51307892 NM_199250 NM_199249	3825	-	BT007253 S77952 DQ893072 DQ896328 AY703451 BC005313 M25629 X13561 AK293363 AY429508 NM_002257	22928	-	AY373373 AY373374 CU686842 CU686864 HQ258133 BC126137 BC144045 BC144046 BC144047 AF303046 BC069480 BC069507 BC069518 NM_017509 NM_138563 NM_138564	30668	-	NM_033068|ACPT|93650|acid phosphatase, testicular##BC095544|GPR32|2854|G protein-coupled receptor 32##BC067453|GPR32|2854|G protein-coupled receptor 32##BC067454|GPR32|2854|G protein-coupled receptor 32##NM_001506|GPR32|2854|G protein-coupled receptor 32##AY870345|CLEC11A|6320|C-type lectin domain family 11, member A##AB009244|CLEC11A|6320|C-type lectin domain family 11, member A##BT019673|CLEC11A|6320|C-type lectin domain family 11, member A##NM_199250|C19orf48|84798|chromosome 19 open reading frame 48##NM_199249|C19orf48|84798|chromosome 19 open reading frame 48##BT007253|KLK1|3816|kallikrein 1##S77952|KLK1|3816|kallikrein 1##DQ893072|KLK1|3816|kallikrein 1##DQ896328|KLK1|3816|kallikrein 1##AY703451|KLK1|3816|kallikrein 1##BC005313|KLK1|3816|kallikrein 1##M25629|KLK1|3816|kallikrein 1##X13561|KLK1|3816|kallikrein 1##AY429508|KLK1|3816|kallikrein 1##NM_002257|KLK1|3816|kallikrein 1##AY373373|KLK15|55554|kallikrein-related peptidase 15##AY373374|KLK15|55554|kallikrein-related peptidase 15##HQ258133|KLK15|55554|kallikrein-related peptidase 15##BC126137|KLK15|55554|kallikrein-related peptidase 15##BC144045|KLK15|55554|kallikrein-related peptidase 15##BC144046|KLK15|55554|kallikrein-related peptidase 15##BC144047|KLK15|55554|kallikrein-related peptidase 15##AF303046|KLK15|55554|kallikrein-related peptidase 15##BC069480|KLK15|55554|kallikrein-related peptidase 15##BC069507|KLK15|55554|kallikrein-related peptidase 15##BC069518|KLK15|55554|kallikrein-related peptidase 15##NM_017509|KLK15|55554|kallikrein-related peptidase 15##NM_138563|KLK15|55554|kallikrein-related peptidase 15##NM_138564|KLK15|55554|kallikrein-related peptidase 15	0.999592	0.0	
chr2	187291575	187291702	reg1014854.p1	3.733	+	NM_173651	-688284	+	BC136602 TSC_hg19_v1_chr2_+_185463544	-1828146	+	BC142612 TSC_hg19_v1_chr2_+_185463319	-1828333	+	TSC_hg19_v1_chr2_+_187350986 AF220184 NM_018471 AK298615 AK001901 AK297658 AF289586	59292	+	TSC_hg19_v1_chr2_+_187351010 BC012336 AF161421 AF109366	59372	+	TSC_hg19_v1_chr2_+_187351051 BC021102 EU176353 AB587394 CU676824	59432	+	NM_173651|FSIP2|401024|fibrous sheath interacting protein 2##BC136602|ZNF804A|91752|zinc finger protein 804A##BC142612|ZNF804A|91752|zinc finger protein 804A##AF220184|ZC3H15|55854|zinc finger CCCH-type containing 15##NM_018471|ZC3H15|55854|zinc finger CCCH-type containing 15##AK298615|ZC3H15|55854|zinc finger CCCH-type containing 15##AK001901|ZC3H15|55854|zinc finger CCCH-type containing 15##AK297658|ZC3H15|55854|zinc finger CCCH-type containing 15##AF289586|ZC3H15|55854|zinc finger CCCH-type containing 15##BC012336|ZC3H15|55854|zinc finger CCCH-type containing 15##AF161421|ZC3H15|55854|zinc finger CCCH-type containing 15##AF109366|ZC3H15|55854|zinc finger CCCH-type containing 15##BC021102|ZC3H15|55854|zinc finger CCCH-type containing 15##EU176353|ZC3H15|55854|zinc finger CCCH-type containing 15	0.0	0.0	
chr2	188639455	188639561	reg1009124.p1	3.733	+	TSC_hg19_v1_chr2_-_188419185 NM_001032281 NM_006287	-220307	-	J03225 AF021834 TSC_hg19_v1_chr2_-_188419163 AK313562 BC015514 BC014332	-220398	-	DQ280491 U17473 L76380 AK291630 AK292998 DQ280490 NM_005795	-326562	-	AK055718 NM_001252668 NM_001252669 NM_016315 TSC_hg19_v1_chr2_+_189156445	516917	+	AK314498 TSC_hg19_v1_chr2_+_189156621	517108	+	TSC_hg19_v1_chr2_+_189156656 BC001103	517154	+	NM_001032281|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##NM_006287|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##J03225|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AF021834|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##AK313562|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC015514|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##BC014332|TFPI|7035|tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)##DQ280491|CALCRL|10203|calcitonin receptor-like##U17473|CALCRL|10203|calcitonin receptor-like##L76380|CALCRL|10203|calcitonin receptor-like##AK291630|CALCRL|10203|calcitonin receptor-like##AK292998|CALCRL|10203|calcitonin receptor-like##NM_005795|CALCRL|10203|calcitonin receptor-like##AK055718|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##NM_001252668|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##NM_001252669|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##NM_016315|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##AK314498|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1##BC001103|GULP1|51454|GULP, engulfment adaptor PTB domain containing 1	0.996744	0.0	denovo_WM_7:36:0.971
chr5	1314386	1314496	reg1013089.p2	3.733	+	JF896283 JF896284 AB085628 AB086379 AB086950 JF896280 JF896286 AF015950 AX810036 AX810378 AF018167 NM_001193376 NM_198253	-19350	-	AK055798 NM_182632 AK298257 BC056757	-88951	+	AK096054 AK290811 NM_001003841 BC146290 BC148801 AB527217 AY591756 AY596807	-112704	+	AB045223 DQ892147 DQ895343 AK027306 BC025305 NM_030782 TSC_hg19_v1_chr5_-_1345095	30581	-	S46955 EF174603 M95167 NM_001044	131085	-	CU676500 BC020166 AK090444 TSC_hg19_v1_chr5_-_1494996	180493	-	JF896283|TERT|7015|telomerase reverse transcriptase##JF896284|TERT|7015|telomerase reverse transcriptase##AB085628|TERT|7015|telomerase reverse transcriptase##AB086379|TERT|7015|telomerase reverse transcriptase##AB086950|TERT|7015|telomerase reverse transcriptase##JF896280|TERT|7015|telomerase reverse transcriptase##AF015950|TERT|7015|telomerase reverse transcriptase##AX810036|TERT|7015|telomerase reverse transcriptase##AX810378|TERT|7015|telomerase reverse transcriptase##AF018167|TERT|7015|telomerase reverse transcriptase##NM_001193376|TERT|7015|telomerase reverse transcriptase##NM_198253|TERT|7015|telomerase reverse transcriptase##AK055798|SLC6A18|348932|solute carrier family 6, member 18##NM_182632|SLC6A18|348932|solute carrier family 6, member 18##AK298257|SLC6A18|348932|solute carrier family 6, member 18##BC056757|SLC6A18|348932|solute carrier family 6, member 18##AK096054|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AK290811|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##NM_001003841|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##BC146290|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##BC148801|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AY591756|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AY596807|SLC6A19|340024|solute carrier family 6 (neutral amino acid transporter), member 19##AB045223|CLPTM1L|81037|CLPTM1-like##DQ892147|CLPTM1L|81037|CLPTM1-like##DQ895343|CLPTM1L|81037|CLPTM1-like##AK027306|CLPTM1L|81037|CLPTM1-like##BC025305|CLPTM1L|81037|CLPTM1-like##NM_030782|CLPTM1L|81037|CLPTM1-like##S46955|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##EF174603|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##M95167|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##NM_001044|SLC6A3|6531|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3##BC020166|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1##AK090444|LPCAT1|79888|lysophosphatidylcholine acyltransferase 1	0.0	0.0	
chr8	56779829	56779948	reg1016434.p2	3.733	+	AK054705 TSC_hg19_v1_chr8_+_56686187	-93705	+	TSC_hg19_v1_chr8_+_56686028 AY028423 AK314693 BX648548 AF432215	-93868	+	AK308247 AK056932 NM_152417 BC020835 BC071636	-93991	-	TSC_hg19_v1_chr8_+_56792383 M16038 NM_001111097 NM_002350 BC126456 BC126458	12477	+	TSC_hg19_v1_chr8_+_56792393 BC059394 BC068551	12507	+	TSC_hg19_v1_chr8_+_56792426 AK290494 BC075001 BC075002 M79321	12632	+	AY028423|TGS1|96764|trimethylguanosine synthase 1##AK314693|TGS1|96764|trimethylguanosine synthase 1##BX648548|TGS1|96764|trimethylguanosine synthase 1##AF432215|TGS1|96764|trimethylguanosine synthase 1##AK308247|TMEM68|137695|transmembrane protein 68##AK056932|TMEM68|137695|transmembrane protein 68##NM_152417|TMEM68|137695|transmembrane protein 68##BC020835|TMEM68|137695|transmembrane protein 68##BC071636|TMEM68|137695|transmembrane protein 68##M16038|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_001111097|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##NM_002350|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126456|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC126458|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC059394|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC068551|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##AK290494|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075001|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##BC075002|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog##M79321|LYN|4067|v-yes-1 Yamaguchi sarcoma viral related oncogene homolog	1.900919	0.0	denovo_WM_7:-21:0.507	denovo_WM_7:-25:0.371	denovo_WM_7:-44:0.844
chr11	62629853	62630033	reg1015508.p1	3.732	+	TSC_hg19_v1_chr11_+_62623580 NM_001012662 NM_001012664 NM_002394 BC001061 AK025584 BC003000	-6393	+	BC000839 BC027980 BC011809 BC017253 BC063571 TSC_hg19_v1_chr11_-_62623358 AK095849	-6658	-	AK001301 NM_018093	-22316	-	TSC_hg19_v1_chr11_+_62648367 NM_001013251 AK304685 AK090758 AX746603 J03569 AK304497 AB018010 J02939 AK225304 J02769 EU832612 EU832683	18564	+	TSC_hg19_v1_chr11_+_62649170 AK308797 AK311592 AF055031	19249	+	BC007740 AK312374 TSC_hg19_v1_chr11_-_62688827	58840	-	NM_001012662|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_001012664|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##NM_002394|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC001061|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK025584|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC003000|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC000839|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC027980|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC011809|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC017253|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##BC063571|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK095849|SNHG1|23642|small nucleolar RNA host gene 1 (non-protein coding)##AK001301|WDR74|54663|WD repeat domain 74##NM_018093|WDR74|54663|WD repeat domain 74##NM_001013251|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304685|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK090758|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J03569|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK304497|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AB018010|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02939|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK225304|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##J02769|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832612|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##EU832683|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK308797|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AK311592|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##AF055031|SLC3A2|6520|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2##BC007740|CHRM1|1128|cholinergic receptor, muscarinic 1##AK312374|CHRM1|1128|cholinergic receptor, muscarinic 1	0.0	0.0	
chr12	648922	648994	reg1007193.p2	3.732	+	AB089940 NM_173593	-79416	+	NM_001130146 NM_032358 AK293165 TSC_hg19_v1_chr12_+_510809 AK027638	-138177	+	TSC_hg19_v1_chr12_-_498451 AK301150 AK301273 AB209999 BC048307 BC053893 NM_001042603 BC092417	-150356	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	103220	+	TSC_hg19_v1_chr12_-_752800 AK298043	103861	-	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	123757	-	AB089940|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_173593|B4GALNT3|283358|beta-1,4-N-acetyl-galactosaminyl transferase 3##NM_001130146|CCDC77|84318|coiled-coil domain containing 77##NM_032358|CCDC77|84318|coiled-coil domain containing 77##AK293165|CCDC77|84318|coiled-coil domain containing 77##AK027638|CCDC77|84318|coiled-coil domain containing 77##AK301150|KDM5A|5927|lysine (K)-specific demethylase 5A##AK301273|KDM5A|5927|lysine (K)-specific demethylase 5A##AB209999|KDM5A|5927|lysine (K)-specific demethylase 5A##BC048307|KDM5A|5927|lysine (K)-specific demethylase 5A##BC053893|KDM5A|5927|lysine (K)-specific demethylase 5A##NM_001042603|KDM5A|5927|lysine (K)-specific demethylase 5A##BC092417|KDM5A|5927|lysine (K)-specific demethylase 5A##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2	0.0	0.0	
chr13	52197853	52197971	reg1013814.p2	3.732	+	TSC_hg19_v1_chr13_+_52158648 AF411978 CU680736	-39177	+	TSC_hg19_v1_chr13_+_52158639 BC014004	-39271	+	AK309815 TSC_hg19_v1_chr13_+_52158630	-39279	+	BC026024 BC009825 NM_001031719 TSC_hg19_v1_chr13_-_52378300 AK023701 NM_024705	180363	-	AK098719 NM_031290 AK225745 AL136887 BC069691 BC069748 BC069770 BC069806	238282	+	DQ015922 U03464 BC143974 BC143973 BC117200 BC143975 BC143976 NM_000053 NM_001005918 NM_001243182 U11700	387638	-	AF411978|WDFY2|115825|WD repeat and FYVE domain containing 2##BC014004|WDFY2|115825|WD repeat and FYVE domain containing 2##AK309815|WDFY2|115825|WD repeat and FYVE domain containing 2##BC026024|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##BC009825|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001031719|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK023701|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_024705|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK098719|CCDC70|83446|coiled-coil domain containing 70##NM_031290|CCDC70|83446|coiled-coil domain containing 70##AK225745|CCDC70|83446|coiled-coil domain containing 70##AL136887|CCDC70|83446|coiled-coil domain containing 70##BC069691|CCDC70|83446|coiled-coil domain containing 70##BC069748|CCDC70|83446|coiled-coil domain containing 70##BC069770|CCDC70|83446|coiled-coil domain containing 70##BC069806|CCDC70|83446|coiled-coil domain containing 70##DQ015922|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U03464|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143974|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143973|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC117200|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143975|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143976|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_000053|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001005918|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001243182|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U11700|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide	0.996149	0.0	denovo_WM_7:72:0.928
chr1	38484563	38484667	reg1008479.p1	3.732	+	TSC_hg19_v1_chr1_+_38478408 AF151852 AF067802 BC005182 AK296018 AK291900	-6185	+	TSC_hg19_v1_chr1_+_38478405 NM_016037 AK308377	-6230	+	TSC_hg19_v1_chr1_-_38471187 BC014501 BC001351 BC011697 AK309179 AK290641 NM_001243878 NM_004468	-13382	-	TSC_hg19_v1_chr1_-_38512453 L26494 NM_002699	27834	-	AF323609 CU677671 DQ891734 DQ894911 AF272035 BC016668 NM_022157 TSC_hg19_v1_chr1_-_39325427 AK298788 AK315791	840771	-	AB451287 AB451419 BT007109 CR456936 DQ891491 DQ893698 DQ894690 AB007191 D50692 BC008686 AK311886 TSC_hg19_v1_chr1_-_39339041 NM_012333	854401	-	AF151852|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AF067802|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC005182|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK296018|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK291900|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##NM_016037|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##AK308377|UTP11L|51118|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)##BC014501|FHL3|2275|four and a half LIM domains 3##BC001351|FHL3|2275|four and a half LIM domains 3##BC011697|FHL3|2275|four and a half LIM domains 3##AK309179|FHL3|2275|four and a half LIM domains 3##AK290641|FHL3|2275|four and a half LIM domains 3##NM_001243878|FHL3|2275|four and a half LIM domains 3##NM_004468|FHL3|2275|four and a half LIM domains 3##L26494|POU3F1|5453|POU class 3 homeobox 1##NM_002699|POU3F1|5453|POU class 3 homeobox 1##AF323609|RRAGC|64121|Ras-related GTP binding C##DQ891734|RRAGC|64121|Ras-related GTP binding C##DQ894911|RRAGC|64121|Ras-related GTP binding C##AF272035|RRAGC|64121|Ras-related GTP binding C##BC016668|RRAGC|64121|Ras-related GTP binding C##NM_022157|RRAGC|64121|Ras-related GTP binding C##AK298788|RRAGC|64121|Ras-related GTP binding C##AK315791|RRAGC|64121|Ras-related GTP binding C##AB451287|MYCBP|26292|c-myc binding protein##AB451419|MYCBP|26292|c-myc binding protein##BT007109|MYCBP|26292|c-myc binding protein##CR456936|MYCBP|26292|c-myc binding protein##DQ891491|MYCBP|26292|c-myc binding protein##DQ893698|MYCBP|26292|c-myc binding protein##DQ894690|MYCBP|26292|c-myc binding protein##AB007191|MYCBP|26292|c-myc binding protein##D50692|MYCBP|26292|c-myc binding protein##BC008686|MYCBP|26292|c-myc binding protein##AK311886|MYCBP|26292|c-myc binding protein##NM_012333|MYCBP|26292|c-myc binding protein	0.997196	0.0	denovo_WM_7:58:0.985
chr2	111476121	111476236	reg1015724.p1	3.732	+	TSC_hg19_v1_chr2_+_111435820 BC040607	-40356	+	AF043294 BC017038 BC028201 TSC_hg19_v1_chr2_-_111435641 AF047471 AF046078 AF053305 AK291221 AK023540 AK225317 AK302418 NM_004336	-40535	-	AL136868 NM_001037866 NM_001123363 NM_032260	-139870	-	AK300513 NM_001142807 BC022268	14001	+	TSC_hg19_v1_chr2_+_111878490 AK290377 AK291269 NM_001204106 NM_001204107 NM_001204108 NM_001204109 NM_001204110 NM_001204111 NM_001204112 NM_001204113 NM_006538 NM_138621 NM_138622 NM_138623 NM_138624 NM_138625 NM_138626 NM_138627 NM_207002 NM_207003 BC033694	402309	+	BC104902 BC104904 TSC_hg19_v1_chr2_-_112641704	1165448	-	AF043294|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC017038|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##BC028201|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF047471|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF046078|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AF053305|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK291221|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK023540|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK225317|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AK302418|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##NM_004336|BUB1|699|budding uninhibited by benzimidazoles 1 homolog (yeast)##AL136868|RGPD5|84220|RANBP2-like and GRIP domain containing 5##NM_001037866|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_001123363|RGPD6|729540|RANBP2-like and GRIP domain containing 6##NM_032260|RGPD5|84220|RANBP2-like and GRIP domain containing 5##AK300513|ACOXL|55289|acyl-CoA oxidase-like##NM_001142807|ACOXL|55289|acyl-CoA oxidase-like##BC022268|ACOXL|55289|acyl-CoA oxidase-like##AK290377|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##AK291269|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204106|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204107|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204108|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204109|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204110|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204111|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204112|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_001204113|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_006538|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138621|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138622|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138623|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138624|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138625|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138626|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_138627|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207002|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##NM_207003|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC033694|BCL2L11|10018|BCL2-like 11 (apoptosis facilitator)##BC104902|ANAPC1|64682|anaphase promoting complex subunit 1##BC104904|ANAPC1|64682|anaphase promoting complex subunit 1	0.433411	0.0	denovo_WM_7:31:0.433
chr22	40772057	40772184	reg1015584.p1	3.732	+	TSC_hg19_v1_chr22_+_40766652 AK301042	-5465	+	TSC_hg19_v1_chr22_+_40766636 AY308849 BC008078	-5479	+	TSC_hg19_v1_chr22_+_40766634 AK297599	-5488	+	TSC_hg19_v1_chr22_-_40859427 AJ297257	87310	-	TSC_hg19_v1_chr22_-_41032681 AF368061	260533	-	TSC_hg19_v1_chr22_-_41032716 BC115039 NM_020831 AF448806 AB037859 BC064620 AJ297258	260584	-	AK301042|SGSM3|27352|small G protein signaling modulator 3##AY308849|SGSM3|27352|small G protein signaling modulator 3##BC008078|SGSM3|27352|small G protein signaling modulator 3##AK297599|SGSM3|27352|small G protein signaling modulator 3##AJ297257|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF368061|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC115039|MKL1|57591|megakaryoblastic leukemia (translocation) 1##NM_020831|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AF448806|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AB037859|MKL1|57591|megakaryoblastic leukemia (translocation) 1##BC064620|MKL1|57591|megakaryoblastic leukemia (translocation) 1##AJ297258|MKL1|57591|megakaryoblastic leukemia (translocation) 1	2.976544	0.0	denovo_WM_7:-53:0.767	denovo_WM_7:69:0.444	denovo_WM_7:70:0.296	denovo_WM_7:85:0.323	denovo_WM_7:86:0.471
chr3	23958596	23958690	reg1016372.p2	3.732	+	TSC_hg19_v1_chr3_+_23958622 NM_001253383 BC030575 BC081565 BC014837	-20	+	TSC_hg19_v1_chr3_-_23958512 NM_020345	-124	-	TSC_hg19_v1_chr3_-_23958419 BC012145 BC066940	-203	-	AK129815 TSC_hg19_v1_chr3_+_23958639 AF283772 AK091751 AK290694 AK292000 AK297091 BC070328 BX537495 BC068198 AK293709 AK098795 AF279903 BC071672 NM_001253382	11	+	NM_001253380 AY347528 L25899 AB529129 BT019672 CU677095 CU687134	629	+	TSC_hg19_v1_chr3_+_23986776 NM_005126 D16815 AK313464 BC045613 BC070035	28172	+	NM_001253383|RPL15|6138|ribosomal protein L15##BC081565|RPL15|6138|ribosomal protein L15##BC014837|RPL15|6138|ribosomal protein L15##NM_020345|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##BC012145|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##BC066940|NKIRAS1|28512|NFKB inhibitor interacting Ras-like 1##AK129815|RPL15|6138|ribosomal protein L15##AF283772|RPL15|6138|ribosomal protein L15##AK290694|RPL15|6138|ribosomal protein L15##AK292000|RPL15|6138|ribosomal protein L15##AK297091|RPL15|6138|ribosomal protein L15##BC070328|RPL15|6138|ribosomal protein L15##BC068198|RPL15|6138|ribosomal protein L15##AK293709|RPL15|6138|ribosomal protein L15##AK098795|RPL15|6138|ribosomal protein L15##AF279903|RPL15|6138|ribosomal protein L15##BC071672|RPL15|6138|ribosomal protein L15##NM_001253382|RPL15|6138|ribosomal protein L15##NM_001253380|RPL15|6138|ribosomal protein L15##AY347528|RPL15|6138|ribosomal protein L15##L25899|RPL15|6138|ribosomal protein L15##BT019672|RPL15|6138|ribosomal protein L15##NM_005126|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##D16815|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##AK313464|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC045613|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2##BC070035|NR1D2|9975|nuclear receptor subfamily 1, group D, member 2	0.0	0.0	
chr4	185204681	185204799	reg1018379.p1	3.732	+	BC035035 AY358676 AK057370 NM_153343	-65675	-	TSC_hg19_v1_chr4_+_184827885 AB384196	-376829	+	TSC_hg19_v1_chr4_+_184827807 AK289840	-376920	+	TSC_hg19_v1_chr4_-_185395705 X15949 DQ409328 AK312953 NM_002199	190941	-	U13737 U13738 BC016926 TSC_hg19_v1_chr4_-_185570599 AK291337 NM_004346 NM_032991	365861	-	NM_152683 BC047467 TSC_hg19_v1_chr4_+_185570889 BX647575 BC018930 AK057729	366093	+	BC035035|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AY358676|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK057370|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##NM_153343|ENPP6|133121|ectonucleotide pyrophosphatase/phosphodiesterase 6##AK289840|STOX2|56977|storkhead box 2##X15949|IRF2|3660|interferon regulatory factor 2##DQ409328|IRF2|3660|interferon regulatory factor 2##AK312953|IRF2|3660|interferon regulatory factor 2##NM_002199|IRF2|3660|interferon regulatory factor 2##U13737|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##U13738|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##BC016926|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##AK291337|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_004346|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_032991|CASP3|836|caspase 3, apoptosis-related cysteine peptidase##NM_152683|CCDC111|201973|coiled-coil domain containing 111##BC047467|CCDC111|201973|coiled-coil domain containing 111##BX647575|CCDC111|201973|coiled-coil domain containing 111##BC018930|CCDC111|201973|coiled-coil domain containing 111##AK057729|CCDC111|201973|coiled-coil domain containing 111	0.999365	0.370486	CTCF.p2:-67:0.370
chr9	92082325	92082449	reg1015382.p1	3.732	+	TSC_hg19_v1_chr9_+_91933425 AK302852 NM_024077 AK090608 AK290182 AX746532 BC036109 AL136881 BC001189 AF380995 BC099900 BC068466	-148969	+	TSC_hg19_v1_chr9_+_91926112 NM_001827 X54942 BC006458 AB527990 BT006630 CR407630 CR542118	-156229	+	BC026314 NM_016848 TSC_hg19_v1_chr9_-_91793734	-288677	-	BC054500 NM_001142287 NM_006378	12223	-	BX648216 TSC_hg19_v1_chr9_-_92113005	30620	-	NM_006705 TSC_hg19_v1_chr9_+_92219926 AY845250 AK313689 AF079806 AF087883 BC000465 BC019325 D83023 AF078078 AB463699 BT007234 CR457038	137594	+	AK302852|SECISBP2|79048|SECIS binding protein 2##NM_024077|SECISBP2|79048|SECIS binding protein 2##AK090608|SECISBP2|79048|SECIS binding protein 2##AK290182|SECISBP2|79048|SECIS binding protein 2##BC036109|SECISBP2|79048|SECIS binding protein 2##AL136881|SECISBP2|79048|SECIS binding protein 2##BC001189|SECISBP2|79048|SECIS binding protein 2##AF380995|SECISBP2|79048|SECIS binding protein 2##BC099900|SECISBP2|79048|SECIS binding protein 2##NM_001827|CKS2|1164|CDC28 protein kinase regulatory subunit 2##X54942|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BC006458|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BT006630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR407630|CKS2|1164|CDC28 protein kinase regulatory subunit 2##CR542118|CKS2|1164|CDC28 protein kinase regulatory subunit 2##BC026314|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##NM_016848|SHC3|53358|SHC (Src homology 2 domain containing) transforming protein 3##BC054500|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_001142287|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006378|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##BX648216|SEMA4D|10507|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D##NM_006705|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AY845250|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AK313689|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF079806|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF087883|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC000465|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BC019325|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##D83023|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##AF078078|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##BT007234|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma##CR457038|GADD45G|10912|growth arrest and DNA-damage-inducible, gamma	0.993792	0.0	denovo_WM_7:67:0.248	denovo_WM_7:68:0.248	denovo_WM_7:69:0.248	denovo_WM_7:70:0.248
chr10	1776544	1776721	reg1004571.p2	3.731	+	TSC_hg19_v1_chr10_+_1102822 AK292591	-673806	+	TSC_hg19_v1_chr10_+_1102750 NM_014023 AK307259 AL136827	-673863	+	BC057827 TSC_hg19_v1_chr10_-_1102645	-673980	-	AF034837 NM_018702	3037	-	TSC_hg19_v1_chr10_+_3109739 BC029138 NM_002627 AK291841 BC002536 D25328 AB385041 DQ895147 EU176319 CU678026	1333115	+	AK092597 AX747622 NM_001242339	1334186	+	AK292591|WDR37|22884|WD repeat domain 37##NM_014023|WDR37|22884|WD repeat domain 37##AK307259|WDR37|22884|WD repeat domain 37##AL136827|WDR37|22884|WD repeat domain 37##BC057827|IDI1|3422|isopentenyl-diphosphate delta isomerase 1##AF034837|ADARB2|105|adenosine deaminase, RNA-specific, B2##NM_018702|ADARB2|105|adenosine deaminase, RNA-specific, B2##BC029138|PFKP|5214|phosphofructokinase, platelet##NM_002627|PFKP|5214|phosphofructokinase, platelet##AK291841|PFKP|5214|phosphofructokinase, platelet##BC002536|PFKP|5214|phosphofructokinase, platelet##D25328|PFKP|5214|phosphofructokinase, platelet##DQ895147|PFKP|5214|phosphofructokinase, platelet##EU176319|PFKP|5214|phosphofructokinase, platelet##AK092597|PFKP|5214|phosphofructokinase, platelet##NM_001242339|PFKP|5214|phosphofructokinase, platelet	0.0	0.0	
chr16	30787615	30787771	reg1017072.p2	3.731	+	TSC_hg19_v1_chr16_-_30787317 AK057076	-362	-	TSC_hg19_v1_chr16_+_30773642 AK297531 AK304521 AK027406 AK293710 BX640763 CR627431 AK291666 AK131310 AK294258 AF122819 AB014561 BC006133 BC011769 BC018647	-14051	+	BC042548 BC073881 AK307279 BC063391 AL122109 BC092491 NM_001014979 NM_001195620	-14260	-	TSC_hg19_v1_chr16_-_30798510 AB002324 NM_001080417	10704	-	BC010017 AJ223980 CU691314 TSC_hg19_v1_chr16_-_30905327	117608	-	TSC_hg19_v1_chr16_-_30905377 BC019071 NM_004765	117702	-	AK297531|RNF40|9810|ring finger protein 40##AK304521|RNF40|9810|ring finger protein 40##AK027406|RNF40|9810|ring finger protein 40##AK293710|RNF40|9810|ring finger protein 40##BX640763|RNF40|9810|ring finger protein 40##CR627431|RNF40|9810|ring finger protein 40##AK291666|RNF40|9810|ring finger protein 40##AK131310|RNF40|9810|ring finger protein 40##AK294258|RNF40|9810|ring finger protein 40##AF122819|RNF40|9810|ring finger protein 40##AB014561|RNF40|9810|ring finger protein 40##BC006133|RNF40|9810|ring finger protein 40##BC011769|RNF40|9810|ring finger protein 40##BC018647|RNF40|9810|ring finger protein 40##BC042548|C16orf93|90835|chromosome 16 open reading frame 93##BC073881|C16orf93|90835|chromosome 16 open reading frame 93##AK307279|C16orf93|90835|chromosome 16 open reading frame 93##BC063391|C16orf93|90835|chromosome 16 open reading frame 93##AL122109|C16orf93|90835|chromosome 16 open reading frame 93##BC092491|C16orf93|90835|chromosome 16 open reading frame 93##NM_001014979|C16orf93|90835|chromosome 16 open reading frame 93##NM_001195620|C16orf93|90835|chromosome 16 open reading frame 93##AB002324|ZNF629|23361|zinc finger protein 629##NM_001080417|ZNF629|23361|zinc finger protein 629##AJ223980|BCL7C|9274|B-cell CLL/lymphoma 7C##BC019071|BCL7C|9274|B-cell CLL/lymphoma 7C##NM_004765|BCL7C|9274|B-cell CLL/lymphoma 7C	0.998839	0.0	
chr17	38712159	38712249	reg1009469.p2	3.731	+	AF417488 AF370421 NM_032865 TSC_hg19_v1_chr17_-_38657876	-54358	-	TSC_hg19_v1_chr17_+_38599701 NM_001552 AK290810 AK304572 BC016041 M62403 M38177 AB463781 BT019891 BT019892	-112385	+	AF285157 AF285158 AF285159 AB587539 J04088 BC140791 TSC_hg19_v1_chr17_-_38574134 BC013429 NM_001067	-138080	-	BC035343 L08176 AK312732 AK127810 L31581 NM_001838	9514	-	AK294218 TSC_hg19_v1_chr17_-_38804093 BC047731 BC063700 AK095047 EU327017 EU327018 EU327019 EU327020 AK294666 AK001532 BC007082 BC011017 NM_003079	91866	-	BC069196 TSC_hg19_v1_chr17_-_38804818	92592	-	AF417488|TNS4|84951|tensin 4##AF370421|TNS4|84951|tensin 4##NM_032865|TNS4|84951|tensin 4##NM_001552|IGFBP4|3487|insulin-like growth factor binding protein 4##AK290810|IGFBP4|3487|insulin-like growth factor binding protein 4##AK304572|IGFBP4|3487|insulin-like growth factor binding protein 4##BC016041|IGFBP4|3487|insulin-like growth factor binding protein 4##M62403|IGFBP4|3487|insulin-like growth factor binding protein 4##M38177|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019891|IGFBP4|3487|insulin-like growth factor binding protein 4##BT019892|IGFBP4|3487|insulin-like growth factor binding protein 4##AF285157|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285158|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##AF285159|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##J04088|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC140791|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC013429|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##NM_001067|TOP2A|7153|topoisomerase (DNA) II alpha 170kDa##BC035343|CCR7|1236|chemokine (C-C motif) receptor 7##L08176|CCR7|1236|chemokine (C-C motif) receptor 7##AK312732|CCR7|1236|chemokine (C-C motif) receptor 7##AK127810|CCR7|1236|chemokine (C-C motif) receptor 7##L31581|CCR7|1236|chemokine (C-C motif) receptor 7##NM_001838|CCR7|1236|chemokine (C-C motif) receptor 7##AK294218|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC047731|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC063700|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK095047|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327018|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327019|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##EU327020|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK294666|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##AK001532|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC007082|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC011017|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##NM_003079|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1##BC069196|SMARCE1|6605|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	0.998692	0.0	denovo_WM_7:-35:0.779
chr20	22213403	22213509	reg1019916.p1	3.731	+	TSC_hg19_v1_chr20_+_21686519 BC143791 BC143793	-526923	+	TSC_hg19_v1_chr20_+_21686296 NM_006192	-527162	+	NM_002509	-718793	-	BC006545 BC019288 AB464525 DQ892883 DQ896132 TSC_hg19_v1_chr20_-_22564902 AK301611 BC011780	351460	-	TSC_hg19_v1_chr20_-_22565060 NM_021784	351619	-	AB028021 TSC_hg19_v1_chr20_-_22566094 NM_153675	352646	-	BC143791|PAX1|5075|paired box 1##BC143793|PAX1|5075|paired box 1##NM_006192|PAX1|5075|paired box 1##NM_002509|NKX2-2|4821|NK2 homeobox 2##BC006545|FOXA2|3170|forkhead box A2##BC019288|FOXA2|3170|forkhead box A2##DQ892883|FOXA2|3170|forkhead box A2##DQ896132|FOXA2|3170|forkhead box A2##AK301611|FOXA2|3170|forkhead box A2##BC011780|FOXA2|3170|forkhead box A2##NM_021784|FOXA2|3170|forkhead box A2##AB028021|FOXA2|3170|forkhead box A2##NM_153675|FOXA2|3170|forkhead box A2	0.99497	0.0	denovo_WM_7:56:0.324	denovo_WM_7:57:0.324	denovo_WM_7:58:0.324
chr21	44530682	44530760	reg1003042.p2	3.731	+	TSC_hg19_v1_chr21_-_44527681 NM_001025203 NM_001025204 NM_006758	-3037	-	AB451244 AB528900 TSC_hg19_v1_chr21_-_44527638 BC001177 BC001923 AJ627978 AL832665 BC005915 M96982 AK307560	-3096	-	L19501 BC007257 NM_001178008 NM_001178009	-34274	-	NM_000394 U05569 BC069528 BC113598 X14789 CU686888 HQ258067 CR407691 U66584	58453	+	TSC_hg19_v1_chr21_-_44845958 AK131076 CU691580 DQ892466 DQ895679	315268	-	TSC_hg19_v1_chr21_-_44847012 AB047786 NM_173354 BC038504	316274	-	NM_001025203|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##NM_001025204|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##NM_006758|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AB451244|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001177|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC001923|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AJ627978|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AL832665|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##BC005915|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##M96982|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##AK307560|U2AF1|7307|U2 small nuclear RNA auxiliary factor 1##L19501|CBS|875|cystathionine-beta-synthase##BC007257|CBS|875|cystathionine-beta-synthase##NM_001178008|CBS|875|cystathionine-beta-synthase##NM_001178009|CBS|875|cystathionine-beta-synthase##NM_000394|CRYAA|1409|crystallin, alpha A##U05569|CRYAA|1409|crystallin, alpha A##BC069528|CRYAA|1409|crystallin, alpha A##BC113598|CRYAA|1409|crystallin, alpha A##X14789|CRYAA|1409|crystallin, alpha A##HQ258067|CRYAA|1409|crystallin, alpha A##CR407691|CRYAA|1409|crystallin, alpha A##U66584|CRYAA|1409|crystallin, alpha A##AK131076|SIK1|150094|salt-inducible kinase 1##DQ892466|SIK1|150094|salt-inducible kinase 1##DQ895679|SIK1|150094|salt-inducible kinase 1##AB047786|SIK1|150094|salt-inducible kinase 1##NM_173354|SIK1|150094|salt-inducible kinase 1##BC038504|SIK1|150094|salt-inducible kinase 1	1.949422	0.0	denovo_WM_7:-75:0.518	denovo_WM_7:-76:0.433
chr2	46658323	46658430	reg1017293.p1	3.731	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	-133401	+	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	-133785	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-779302	+	NM_001145051	48327	+	BC034808 NM_080653	88719	-	TSC_hg19_v1_chr2_+_46769874 NM_012249 AK095329	111473	+	U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375##BC034808|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_080653|ATP6V1E2|90423|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2##NM_012249|RHOQ|23433|ras homolog gene family, member Q##AK095329|RHOQ|23433|ras homolog gene family, member Q	0.545308	0.0	denovo_WM_7:-5:0.237	denovo_WM_7:-7:0.207
chr3	165342620	165342768	reg1015729.p1	3.731	+	BC114621 AB020655 NM_014926 TSC_hg19_v1_chr3_-_164914563	-428189	-	BC132834 BC132860 BC115033 BC115034 BC116452 BC116453 X63597 NM_001041	-546416	-	NM_001080440	-4128099	+	M16474 BC018141 BC008396 TSC_hg19_v1_chr3_-_165555212 AK292063 M16541	212499	-	NM_000055 TSC_hg19_v1_chr3_-_165555283	212573	-	AK093296 AX748039 BC034229 NM_001199202 NM_001199201 NM_024687	1755383	-	BC114621|SLITRK3|22865|SLIT and NTRK-like family, member 3##AB020655|SLITRK3|22865|SLIT and NTRK-like family, member 3##NM_014926|SLITRK3|22865|SLIT and NTRK-like family, member 3##BC132834|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC132860|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115033|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC115034|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116452|SI|6476|sucrase-isomaltase (alpha-glucosidase)##BC116453|SI|6476|sucrase-isomaltase (alpha-glucosidase)##X63597|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001041|SI|6476|sucrase-isomaltase (alpha-glucosidase)##NM_001080440|OTOL1|131149|otolin 1##M16474|BCHE|590|butyrylcholinesterase##BC018141|BCHE|590|butyrylcholinesterase##BC008396|BCHE|590|butyrylcholinesterase##AK292063|BCHE|590|butyrylcholinesterase##M16541|BCHE|590|butyrylcholinesterase##NM_000055|BCHE|590|butyrylcholinesterase##AK093296|ZBBX|79740|zinc finger, B-box domain containing##BC034229|ZBBX|79740|zinc finger, B-box domain containing##NM_001199202|ZBBX|79740|zinc finger, B-box domain containing##NM_001199201|ZBBX|79740|zinc finger, B-box domain containing##NM_024687|ZBBX|79740|zinc finger, B-box domain containing	0.0	0.87635	CTCF.p2:48:0.876
chr4	69918290	69918404	reg1013261.p2	3.731	+	NM_001075 NM_001144767	-32235	-	HQ258456 BC130533 AY358727 AY542891 NM_024743	-100854	-	TSC_hg19_v1_chr4_+_69681710 BC113649 AK222839 AK222872 AK292738 AK298432 NM_001075 NM_001144767 X63359	-236629	+	AK313190 TSC_hg19_v1_chr4_+_69962191 BC030974 NM_001074 BC107727 AK223142 J05428 DQ893657 DQ895814	43867	+	AF016492 BC069441 BC107059 BC107060 NM_001073 AK222839 AK222872 AK292738 AK298432 BC113649	162110	-	AF177272 AF177273 AF177274 NM_001207004 NM_053039 AB451456	227870	+	NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##HQ258456|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC130533|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY358727|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##AY542891|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##NM_024743|UGT2A3|79799|UDP glucuronosyltransferase 2 family, polypeptide A3##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001075|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##NM_001144767|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK313190|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##BC030974|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##NM_001074|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AK223142|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##J05428|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ893657|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##DQ895814|UGT2B7|7364|UDP glucuronosyltransferase 2 family, polypeptide B7##AF016492|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC069441|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107059|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##BC107060|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##NM_001073|UGT2B11|10720|UDP glucuronosyltransferase 2 family, polypeptide B11##AK222839|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK222872|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK292738|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AK298432|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##BC113649|UGT2B10|7365|UDP glucuronosyltransferase 2 family, polypeptide B10##AF177272|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177273|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AF177274|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_001207004|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##NM_053039|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28##AB451456|UGT2B28|54490|UDP glucuronosyltransferase 2 family, polypeptide B28	1.917998	0.0	denovo_WM_7:-76:0.923
chrX	987428	987608	reg1013130.p2	3.731	+	NM_000451 NM_006883 U89331	-402440	+	AK293506 NM_013239	-639829	-	NM_018390 BC064136 BC005028 BC000888 BC032072	-789411	+	AB052639 AF338733 AY775789 NM_001012288 AF142570 NM_022148 AK026800 AK225583 AK223303	344066	-	NM_001161529 NM_001161531 NM_001161532 NM_006140 NM_172245 NM_172246 NM_172249 AK293086 AK301395 BC071835 M64445 BC002635 AL833597 AK309630 L29348 L29349 U93096 X17648	400196	+	NM_001161530 NM_172247 M73832 DQ893104 DQ896376 AB590144 CU687176 DQ841258 X54935	414065	+	NM_000451|SHOX|6473|short stature homeobox##NM_006883|SHOX|6473|short stature homeobox##U89331|SHOX|6473|short stature homeobox##AK293506|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_013239|PPP2R3B|28227|protein phosphatase 2, regulatory subunit B'', beta##NM_018390|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC064136|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC005028|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC000888|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##BC032072|PLCXD1|55344|phosphatidylinositol-specific phospholipase C, X domain containing 1##AB052639|CRLF2|64109|cytokine receptor-like factor 2##AF338733|CRLF2|64109|cytokine receptor-like factor 2##AY775789|CRLF2|64109|cytokine receptor-like factor 2##NM_001012288|CRLF2|64109|cytokine receptor-like factor 2##AF142570|CRLF2|64109|cytokine receptor-like factor 2##NM_022148|CRLF2|64109|cytokine receptor-like factor 2##AK026800|CRLF2|64109|cytokine receptor-like factor 2##AK223303|CRLF2|64109|cytokine receptor-like factor 2##NM_001161529|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161531|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161532|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_006140|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172245|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172246|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172249|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK293086|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK301395|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC071835|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M64445|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##BC002635|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AL833597|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##AK309630|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29348|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##L29349|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##U93096|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X17648|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_001161530|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##NM_172247|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##M73832|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ893104|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ896376|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##DQ841258|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)##X54935|CSF2RA|1438|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	0.059087	0.0	denovo_WM_7:107:0.566
chr11	66936814	66936933	reg1013733.p1	3.730	+	TSC_hg19_v1_chr11_+_66886737 BC047486 NM_012308	-50134	+	TSC_hg19_v1_chr11_+_66824317 BC001338 AF498973 CU674656 DQ891124 DQ894303	-112533	+	TSC_hg19_v1_chr11_+_66824285 NM_014578	-112587	+	AK096194 TSC_hg19_v1_chr11_+_67007484	70611	+	TSC_hg19_v1_chr11_+_67007558 AB490246 AK299725	70710	+	TSC_hg19_v1_chr11_+_67033926 NM_001619	97035	+	BC047486|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_012308|KDM2A|22992|lysine (K)-specific demethylase 2A##BC001338|RHOD|29984|ras homolog gene family, member D##AF498973|RHOD|29984|ras homolog gene family, member D##DQ891124|RHOD|29984|ras homolog gene family, member D##DQ894303|RHOD|29984|ras homolog gene family, member D##NM_014578|RHOD|29984|ras homolog gene family, member D##AK096194|LOC100131150|100131150|uncharacterized LOC100131150##AB490246|KDM2A|22992|lysine (K)-specific demethylase 2A##AK299725|KDM2A|22992|lysine (K)-specific demethylase 2A##NM_001619|ADRBK1|156|adrenergic, beta, receptor kinase 1	1.666567	0.0	denovo_WM_7:-12:0.446	denovo_WM_7:-13:0.441	denovo_WM_7:-97:0.245	denovo_WM_7:-98:0.249
chr16	8955578	8955655	reg1015503.p1	3.730	+	NM_000303 TSC_hg19_v1_chr16_+_8891675 AK296123 U85773 AK300785 AK291537 AK299979 AK311035 AK312532 AK304320 AK296630 BC008310	-63918	+	TSC_hg19_v1_chr16_-_8891497 BC015912 AK225638 AL080088 AK314404 NM_015421 AK093383	-64071	-	TSC_hg19_v1_chr16_+_8814575 AK290501 NM_001127448 AK310771	-141036	+	NM_001042476 BC001333	6636	-	TSC_hg19_v1_chr16_-_8962864 BC108283 BC000782 AK093698 AK311777 NM_014316 BC003366	7244	-	TSC_hg19_v1_chr16_-_9057250 NM_003470 Z72499	101679	-	NM_000303|PMM2|5373|phosphomannomutase 2##U85773|PMM2|5373|phosphomannomutase 2##AK300785|PMM2|5373|phosphomannomutase 2##AK291537|PMM2|5373|phosphomannomutase 2##AK299979|PMM2|5373|phosphomannomutase 2##AK311035|PMM2|5373|phosphomannomutase 2##AK312532|PMM2|5373|phosphomannomutase 2##AK304320|PMM2|5373|phosphomannomutase 2##AK296630|PMM2|5373|phosphomannomutase 2##BC008310|PMM2|5373|phosphomannomutase 2##BC015912|TMEM186|25880|transmembrane protein 186##AK225638|TMEM186|25880|transmembrane protein 186##AL080088|TMEM186|25880|transmembrane protein 186##AK314404|TMEM186|25880|transmembrane protein 186##NM_015421|TMEM186|25880|transmembrane protein 186##AK093383|TMEM186|25880|transmembrane protein 186##AK290501|ABAT|18|4-aminobutyrate aminotransferase##NM_001127448|ABAT|18|4-aminobutyrate aminotransferase##AK310771|ABAT|18|4-aminobutyrate aminotransferase##NM_001042476|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC001333|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC108283|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC000782|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK093698|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##AK311777|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_014316|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##BC003366|CARHSP1|23589|calcium regulated heat stable protein 1, 24kDa##NM_003470|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)##Z72499|USP7|7874|ubiquitin specific peptidase 7 (herpes virus-associated)	0.0	0.0	
chr17	75489701	75489858	reg1019735.p1	3.730	+	AK056495 NM_001113495	-18455	+	AK299828 TSC_hg19_v1_chr17_+_75447450	-42390	+	TSC_hg19_v1_chr17_+_75446735 AJ312320 AK022493	-42997	+	TSC_hg19_v1_chr17_+_75543021 AK096234	53241	+	BC039479 NM_001142640 NM_018996	510503	+	TSC_hg19_v1_chr17_-_76124768 AK074065	634993	-	AK056495|SEPT9|10801|septin 9##NM_001113495|SEPT9|10801|septin 9##AK299828|SEPT9|10801|septin 9##AJ312320|SEPT9|10801|septin 9##AK022493|SEPT9|10801|septin 9##AK096234|LOC100507351|100507351|uncharacterized LOC100507351##BC039479|TNRC6C|57690|trinucleotide repeat containing 6C##NM_001142640|TNRC6C|57690|trinucleotide repeat containing 6C##NM_018996|TNRC6C|57690|trinucleotide repeat containing 6C##AK074065|TMC6|11322|transmembrane channel-like 6	0.99575	0.067942	
chr1	9223794	9223860	reg1018542.p1	3.730	+	DQ892804 DQ896051 TSC_hg19_v1_chr1_-_9189169 AK022194 AK292888 AK304154 AY768808 NM_024980 BC094733 BC018691	-34606	-	TSC_hg19_v1_chr1_-_9129695 M55531 AK290398 AK294368 NM_001135585 NM_003039	-94051	-	TSC_hg19_v1_chr1_-_9129644 AK289849 BC001692 BC001820 AK295785 BC035878	-94186	-	TSC_hg19_v1_chr1_+_9294832 BC081559	70988	+	TSC_hg19_v1_chr1_+_9294863 AJ012590 NM_004285	71090	+	CR749282 TSC_hg19_v1_chr1_+_9299950	76111	+	DQ892804|GPR157|80045|G protein-coupled receptor 157##DQ896051|GPR157|80045|G protein-coupled receptor 157##AK022194|GPR157|80045|G protein-coupled receptor 157##AK292888|GPR157|80045|G protein-coupled receptor 157##AK304154|GPR157|80045|G protein-coupled receptor 157##AY768808|GPR157|80045|G protein-coupled receptor 157##NM_024980|GPR157|80045|G protein-coupled receptor 157##BC018691|GPR157|80045|G protein-coupled receptor 157##M55531|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK290398|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK294368|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_001135585|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##NM_003039|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK289849|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001692|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC001820|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##AK295785|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC035878|SLC2A5|6518|solute carrier family 2 (facilitated glucose/fructose transporter), member 5##BC081559|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##AJ012590|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##NM_004285|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)##CR749282|H6PD|9563|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	0.0	0.0	
chr19	47551068	47551214	reg1011973.p2	3.730	+	AB054002 NM_002517 U77968	-26930	+	TSC_hg19_v1_chr19_+_47523068 BC039016	-28065	+	AB051509 AF159851 BC131565 BC150257 NM_004491	-129209	+	AK000519 NM_017854 TSC_hg19_v1_chr19_-_47551883 BC002907	755	-	AK125279 TSC_hg19_v1_chr19_-_47615487	64345	-	TSC_hg19_v1_chr19_-_47615825 AB384098	64682	-	AB054002|NPAS1|4861|neuronal PAS domain protein 1##NM_002517|NPAS1|4861|neuronal PAS domain protein 1##U77968|NPAS1|4861|neuronal PAS domain protein 1##BC039016|NPAS1|4861|neuronal PAS domain protein 1##AB051509|ARHGAP35|2909|Rho GTPase activating protein 35##AF159851|ARHGAP35|2909|Rho GTPase activating protein 35##BC131565|ARHGAP35|2909|Rho GTPase activating protein 35##BC150257|ARHGAP35|2909|Rho GTPase activating protein 35##NM_004491|ARHGAP35|2909|Rho GTPase activating protein 35##AK000519|TMEM160|54958|transmembrane protein 160##NM_017854|TMEM160|54958|transmembrane protein 160##BC002907|TMEM160|54958|transmembrane protein 160##AK125279|ZC3H4|23211|zinc finger CCCH-type containing 4	0.958529	0.024493	denovo_WM_7:-13:0.350	denovo_WM_7:-15:0.553
chr6	3362694	3362843	reg1015094.p2	3.730	+	TSC_hg19_v1_chr6_-_3272352 BC090851 BC022217	-90338	-	TSC_hg19_v1_chr6_+_3259232 AK126623 AK095683	-103529	+	TSC_hg19_v1_chr6_+_3259180 NM_001128591 NM_001128592 NM_001135750	-103610	+	BC128580 BC128581 BC038748 NM_021945	82439	-	TSC_hg19_v1_chr6_-_3456513 AL110245	93746	-	BC040876 NM_015482	93995	-	BC090851|SLC22A23|63027|solute carrier family 22, member 23##BC022217|SLC22A23|63027|solute carrier family 22, member 23##AK126623|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##AK095683|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128591|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001128592|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##NM_001135750|PSMG4|389362|proteasome (prosome, macropain) assembly chaperone 4##BC128580|SLC22A23|63027|solute carrier family 22, member 23##BC128581|SLC22A23|63027|solute carrier family 22, member 23##BC038748|SLC22A23|63027|solute carrier family 22, member 23##NM_021945|SLC22A23|63027|solute carrier family 22, member 23##AL110245|SLC22A23|63027|solute carrier family 22, member 23##BC040876|SLC22A23|63027|solute carrier family 22, member 23##NM_015482|SLC22A23|63027|solute carrier family 22, member 23	0.84806	0.0	denovo_WM_7:-102:0.209	denovo_WM_7:-106:0.386
chr8	53878537	53878625	reg1018178.p1	3.730	+	BC069117 BC107101 NM_005285	-26114	+	AB059622 TSC_hg19_v1_chr8_-_53626996 NM_001083617 NM_014781	-251568	-	AK291699 D86958 TSC_hg19_v1_chr8_-_53626990	-251595	-	BC099912 AK310407 AY168006 NM_000912 AY466378	285631	-	AK098305 NM_213620 BC014862 AF125105 TSC_hg19_v1_chr8_-_54755806 BC007421 BC007454 BC025275 AF112204 AF132945 AK308204	877098	-	AK022345 TSC_hg19_v1_chr8_-_54755834	877246	-	BC069117|NPBWR1|2831|neuropeptides B/W receptor 1##BC107101|NPBWR1|2831|neuropeptides B/W receptor 1##NM_005285|NPBWR1|2831|neuropeptides B/W receptor 1##AB059622|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_001083617|RB1CC1|9821|RB1-inducible coiled-coil 1##NM_014781|RB1CC1|9821|RB1-inducible coiled-coil 1##AK291699|RB1CC1|9821|RB1-inducible coiled-coil 1##D86958|RB1CC1|9821|RB1-inducible coiled-coil 1##BC099912|OPRK1|4986|opioid receptor, kappa 1##AK310407|OPRK1|4986|opioid receptor, kappa 1##AY168006|OPRK1|4986|opioid receptor, kappa 1##NM_000912|OPRK1|4986|opioid receptor, kappa 1##AY466378|OPRK1|4986|opioid receptor, kappa 1##AK098305|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##NM_213620|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC014862|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF125105|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007421|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC007454|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##BC025275|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF112204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AF132945|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK308204|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H##AK022345|ATP6V1H|51606|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H	0.0	0.930516	CTCF.p2:-10:0.931
chr9	33290023	33290135	reg1009489.p1	3.730	+	TSC_hg19_v1_chr9_+_33265046 BC006974 BC020796 AF132968 AF161525 AB528724 CU675479 DQ893179 DQ896479 DQ896480	-25020	+	NM_001195536 NM_016410 TSC_hg19_v1_chr9_+_33265035 BC016698 BC007457 AK315455 AK024753 BC018603 BC021168 AK295744	-25123	+	AM392568 BC014774 TSC_hg19_v1_chr9_-_33264707 AK096038 AK316577 AF116273 BC002407 AK222749 AF022224 U46917 BC001936 Z35491 NM_001172415 NM_004323	-25471	-	NM_002504 NM_147133 NM_147134 TSC_hg19_v1_chr9_+_33290509 AF332009 AK291643 AL832342	395	+	TSC_hg19_v1_chr9_+_33290543 AK225750 BC012151 AB385216 DQ893676 DQ895843	474	+	AK310456 TSC_hg19_v1_chr9_-_33395273	105190	-	BC006974|CHMP5|51510|charged multivesicular body protein 5##BC020796|CHMP5|51510|charged multivesicular body protein 5##AF132968|CHMP5|51510|charged multivesicular body protein 5##AF161525|CHMP5|51510|charged multivesicular body protein 5##DQ893179|CHMP5|51510|charged multivesicular body protein 5##DQ896479|CHMP5|51510|charged multivesicular body protein 5##DQ896480|CHMP5|51510|charged multivesicular body protein 5##NM_001195536|CHMP5|51510|charged multivesicular body protein 5##NM_016410|CHMP5|51510|charged multivesicular body protein 5##BC016698|CHMP5|51510|charged multivesicular body protein 5##BC007457|CHMP5|51510|charged multivesicular body protein 5##AK315455|CHMP5|51510|charged multivesicular body protein 5##AK024753|CHMP5|51510|charged multivesicular body protein 5##BC018603|CHMP5|51510|charged multivesicular body protein 5##BC021168|CHMP5|51510|charged multivesicular body protein 5##AK295744|CHMP5|51510|charged multivesicular body protein 5##AM392568|BAG1|573|BCL2-associated athanogene##BC014774|BAG1|573|BCL2-associated athanogene##AK096038|BAG1|573|BCL2-associated athanogene##AK316577|BAG1|573|BCL2-associated athanogene##AF116273|BAG1|573|BCL2-associated athanogene##AK222749|BAG1|573|BCL2-associated athanogene##AF022224|BAG1|573|BCL2-associated athanogene##U46917|BAG1|573|BCL2-associated athanogene##BC001936|BAG1|573|BCL2-associated athanogene##Z35491|BAG1|573|BCL2-associated athanogene##NM_001172415|BAG1|573|BCL2-associated athanogene##NM_004323|BAG1|573|BCL2-associated athanogene##NM_002504|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_147133|NFX1|4799|nuclear transcription factor, X-box binding 1##NM_147134|NFX1|4799|nuclear transcription factor, X-box binding 1##AF332009|NFX1|4799|nuclear transcription factor, X-box binding 1##AK291643|NFX1|4799|nuclear transcription factor, X-box binding 1##AL832342|NFX1|4799|nuclear transcription factor, X-box binding 1##AK225750|NFX1|4799|nuclear transcription factor, X-box binding 1##BC012151|NFX1|4799|nuclear transcription factor, X-box binding 1##DQ893676|NFX1|4799|nuclear transcription factor, X-box binding 1##DQ895843|NFX1|4799|nuclear transcription factor, X-box binding 1##AK310456|AQP7|364|aquaporin 7	0.999883	0.0	
chrX	109280071	109280173	reg1017352.p2	3.730	+	TSC_hg19_v1_chrX_+_109246360 BC085605	-33767	+	TSC_hg19_v1_chrX_+_109246341 NM_032227 AK026332	-33782	+	TSC_hg19_v1_chrX_+_109245890 AK094127 NM_017698	-34252	+	CU687440 TSC_hg19_v1_chrX_-_109561311 AK314596 BC060813	281183	-	TSC_hg19_v1_chrX_-_109561314 BX648797 NM_001025580 NM_015365	281224	-	TSC_hg19_v1_chrX_-_109561428 AJ007014	281324	-	BC085605|TMEM164|84187|transmembrane protein 164##NM_032227|TMEM164|84187|transmembrane protein 164##AK026332|TMEM164|84187|transmembrane protein 164##AK094127|TMEM164|84187|transmembrane protein 164##NM_017698|TMEM164|84187|transmembrane protein 164##AK314596|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BC060813|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##BX648797|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_001025580|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##NM_015365|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1##AJ007014|AMMECR1|9949|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	0.777033	0.0	denovo_WM_7:11:0.671
chr1	155220611	155220741	reg1016655.p1	3.729	+	BC062626 AK311242 TSC_hg19_v1_chr1_-_155214419 AK312502 BX648487 AK300829 AK291911 AK300876 NM_001005741 NM_001005742 NM_001171811	-6193	-	TSC_hg19_v1_chr1_-_155211049 AK298900 AK301879 NM_001171812 NM_000157	-9618	-	K02920 AB527624 BC003356 D13286 AK301374 M19285 M22212 TSC_hg19_v1_chr1_-_155211041 AK300186 AK302000	-9710	-	AB587342 EU446765 CU679147 CU691816 TSC_hg19_v1_chr1_-_155224733 BC040136 BC006493 BC007444 BC033707	4037	-	TSC_hg19_v1_chr1_-_155224954 BC017262	4290	-	BC008854 BC010471 TSC_hg19_v1_chr1_-_155225221 AK093335 AX748059 NM_006589 NM_198264	4542	-	BC062626|GBAP1|2630|glucosidase, beta, acid pseudogene 1##AK311242|GBA|2629|glucosidase, beta, acid##AK312502|GBA|2629|glucosidase, beta, acid##BX648487|GBA|2629|glucosidase, beta, acid##AK300829|GBA|2629|glucosidase, beta, acid##AK291911|GBA|2629|glucosidase, beta, acid##AK300876|GBA|2629|glucosidase, beta, acid##NM_001005741|GBA|2629|glucosidase, beta, acid##NM_001005742|GBA|2629|glucosidase, beta, acid##NM_001171811|GBA|2629|glucosidase, beta, acid##AK298900|GBA|2629|glucosidase, beta, acid##AK301879|GBA|2629|glucosidase, beta, acid##NM_001171812|GBA|2629|glucosidase, beta, acid##NM_000157|GBA|2629|glucosidase, beta, acid##K02920|GBA|2629|glucosidase, beta, acid##BC003356|GBA|2629|glucosidase, beta, acid##D13286|GBA|2629|glucosidase, beta, acid##AK301374|GBA|2629|glucosidase, beta, acid##M19285|GBA|2629|glucosidase, beta, acid##AK300186|GBA|2629|glucosidase, beta, acid##AK302000|GBA|2629|glucosidase, beta, acid##EU446765|FAM189B|10712|family with sequence similarity 189, member B##BC040136|FAM189B|10712|family with sequence similarity 189, member B##BC006493|FAM189B|10712|family with sequence similarity 189, member B##BC007444|FAM189B|10712|family with sequence similarity 189, member B##BC033707|FAM189B|10712|family with sequence similarity 189, member B##BC017262|FAM189B|10712|family with sequence similarity 189, member B##BC008854|FAM189B|10712|family with sequence similarity 189, member B##BC010471|FAM189B|10712|family with sequence similarity 189, member B##AK093335|FAM189B|10712|family with sequence similarity 189, member B##NM_006589|FAM189B|10712|family with sequence similarity 189, member B##NM_198264|FAM189B|10712|family with sequence similarity 189, member B	0.0	0.515091	CTCF.p2:-51:0.367
chr1	46777553	46777619	reg1016589.p1	3.729	+	TSC_hg19_v1_chr1_+_46769369 D28439 BC093060 BC001934 NM_006004 BC015177 BC107703 BC001426 AK311967 Y00764 M36647 BT007070	-8199	+	TSC_hg19_v1_chr1_-_46769053 NM_006369 AK297596	-8538	-	TSC_hg19_v1_chr1_-_46769016 AK291283 BC101522 BC101524	-8569	-	NM_199044 TSC_hg19_v1_chr1_+_46806483 AK021577 BC014441 BX648592 AK291741 AK295003 AK311009 AB528648 CU676995	28857	+	TSC_hg19_v1_chr1_+_46859963 NM_001441 U82535 BC034478 BC093632 BC111941 BC110404	82390	+	NM_147192 NM_172225 AB037699 AF398527 AF398528 AB527840	195086	+	D28439|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC093060|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001934|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006004|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC015177|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC107703|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BC001426|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##AK311967|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##Y00764|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##M36647|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##BT007070|UQCRH|7388|ubiquinol-cytochrome c reductase hinge protein##NM_006369|LRRC41|10489|leucine rich repeat containing 41##AK297596|LRRC41|10489|leucine rich repeat containing 41##AK291283|LRRC41|10489|leucine rich repeat containing 41##BC101522|LRRC41|10489|leucine rich repeat containing 41##BC101524|LRRC41|10489|leucine rich repeat containing 41##NM_199044|NSUN4|387338|NOP2/Sun domain family, member 4##AK021577|NSUN4|387338|NOP2/Sun domain family, member 4##BC014441|NSUN4|387338|NOP2/Sun domain family, member 4##BX648592|NSUN4|387338|NOP2/Sun domain family, member 4##AK291741|NSUN4|387338|NOP2/Sun domain family, member 4##AK295003|NSUN4|387338|NOP2/Sun domain family, member 4##NM_001441|FAAH|2166|fatty acid amide hydrolase##U82535|FAAH|2166|fatty acid amide hydrolase##BC034478|FAAH|2166|fatty acid amide hydrolase##BC093632|FAAH|2166|fatty acid amide hydrolase##BC111941|FAAH|2166|fatty acid amide hydrolase##BC110404|FAAH|2166|fatty acid amide hydrolase##NM_147192|DMBX1|127343|diencephalon/mesencephalon homeobox 1##NM_172225|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AB037699|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398527|DMBX1|127343|diencephalon/mesencephalon homeobox 1##AF398528|DMBX1|127343|diencephalon/mesencephalon homeobox 1	0.992041	0.0	denovo_WM_7:22:0.837
chr16	22452194	22452367	reg1017561.p1	3.729	+	CU676000 DQ892203 DQ892204 DQ895399 D12981 AB528417 AK292273 M63256 TSC_hg19_v1_chr16_-_22385939 BC017503 NM_001802	-66485	-	TSC_hg19_v1_chr16_+_22308740 AK026645 AK300735 AK023160 NM_018119 AK023231 AK296813 AK222789 BC000285 AK001371 AK222671 AB040885	-143532	+	TSC_hg19_v1_chr16_+_22217630 NM_013302 AK308757 BC032665	-234607	+	NM_001135865 BC036263 AK296338 CU690320	72702	+	TSC_hg19_v1_chr16_+_22825482 AY359095 AK313463	373222	+	AB209794 AF105374 AF105375 NM_006043 BC093734 BC093736	373571	+	DQ892203|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ892204|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##DQ895399|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##D12981|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK292273|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##M63256|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##BC017503|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##NM_001802|CDR2|1039|cerebellar degeneration-related protein 2, 62kDa##AK026645|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK300735|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023160|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_018119|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK023231|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK296813|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222789|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##BC000285|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK001371|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AK222671|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##AB040885|POLR3E|55718|polymerase (RNA) III (DNA directed) polypeptide E (80kD)##NM_013302|EEF2K|29904|eukaryotic elongation factor-2 kinase##AK308757|EEF2K|29904|eukaryotic elongation factor-2 kinase##BC032665|EEF2K|29904|eukaryotic elongation factor-2 kinase##NM_001135865|LOC100132247|100132247|nuclear pore complex interacting protein related gene##BC036263|NPIPL3|23117|nuclear pore complex interacting protein-like 3##AK296338|LOC100132247|100132247|nuclear pore complex interacting protein related gene##AY359095|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AK313463|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AB209794|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105374|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##AF105375|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##NM_006043|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093734|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2##BC093736|HS3ST2|9956|heparan sulfate (glucosamine) 3-O-sulfotransferase 2	0.994703	0.0	denovo_WM_7:-2:0.995
chr16	57643641	57643821	reg1004161.p1	3.729	+	TSC_hg19_v1_chr16_+_57576577 BC032401 NM_153837	-67143	+	TSC_hg19_v1_chr16_+_57576554 AK303661 AK292783 AK160368 AY358447 AK301357	-67177	+	BC008285 BC009941 NM_033212	-73266	-	AK131550 TSC_hg19_v1_chr16_+_57653651 CR936747	9924	+	NM_001145770 NM_005682 AK075270 AY358400	10217	+	AK312405 NM_001145771 NM_001145772 NM_001145773 NM_201524 NM_201525 TSC_hg19_v1_chr16_+_57662543 AK075555 AK299110	18723	+	BC032401|GPR114|221188|G protein-coupled receptor 114##NM_153837|GPR114|221188|G protein-coupled receptor 114##AK303661|GPR114|221188|G protein-coupled receptor 114##AK292783|GPR114|221188|G protein-coupled receptor 114##AK160368|GPR114|221188|G protein-coupled receptor 114##AY358447|GPR114|221188|G protein-coupled receptor 114##AK301357|GPR114|221188|G protein-coupled receptor 114##BC008285|CCDC102A|92922|coiled-coil domain containing 102A##BC009941|CCDC102A|92922|coiled-coil domain containing 102A##NM_033212|CCDC102A|92922|coiled-coil domain containing 102A##AK131550|GPR56|9289|G protein-coupled receptor 56##CR936747|GPR56|9289|G protein-coupled receptor 56##NM_001145770|GPR56|9289|G protein-coupled receptor 56##NM_005682|GPR56|9289|G protein-coupled receptor 56##AK075270|GPR56|9289|G protein-coupled receptor 56##AY358400|GPR56|9289|G protein-coupled receptor 56##AK312405|GPR56|9289|G protein-coupled receptor 56##NM_001145771|GPR56|9289|G protein-coupled receptor 56##NM_001145772|GPR56|9289|G protein-coupled receptor 56##NM_001145773|GPR56|9289|G protein-coupled receptor 56##NM_201524|GPR56|9289|G protein-coupled receptor 56##NM_201525|GPR56|9289|G protein-coupled receptor 56##AK075555|GPR56|9289|G protein-coupled receptor 56##AK299110|GPR56|9289|G protein-coupled receptor 56	0.0	0.0	
chr20	50211449	50211522	reg1004973.p1	3.729	+	AK304147 AK226146 EU887575 EU887579 TSC_hg19_v1_chr20_-_50179379	-32101	-	EU887574 EU887577 NM_001136021	-32318	-	TSC_hg19_v1_chr20_-_50159271 EU887576 EU887580 NM_012340 NM_173091 U43341 U43342	-52210	-	BC110591 BC110592 BC063701 TSC_hg19_v1_chr20_-_50314160	102593	-	TSC_hg19_v1_chr20_-_50384875 AB385363 AB014511 AK299064	173393	-	TSC_hg19_v1_chr20_-_50384925 NM_006045	173443	-	AK304147|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##AK226146|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887575|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887579|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887574|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887577|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_001136021|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887576|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##EU887580|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_012340|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##NM_173091|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43341|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##U43342|NFATC2|4773|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2##BC110591|ATP9A|10079|ATPase, class II, type 9A##BC110592|ATP9A|10079|ATPase, class II, type 9A##BC063701|ATP9A|10079|ATPase, class II, type 9A##AB014511|ATP9A|10079|ATPase, class II, type 9A##AK299064|ATP9A|10079|ATPase, class II, type 9A##NM_006045|ATP9A|10079|ATPase, class II, type 9A	1.028206	0.0	denovo_WM_7:39:0.517	denovo_WM_7:40:0.461
chr3	23797969	23798091	reg1017538.p1	3.729	+	TSC_hg19_v1_chr3_+_23244727 AK057886 NM_152653 BC022332	-553275	+	TSC_hg19_v1_chr3_+_23244600 AK307075	-553447	+	AK310298 TSC_hg19_v1_chr3_-_22414124	-1383896	-	TSC_hg19_v1_chr3_+_23847445 NM_003341 NM_182666 BC009139	49380	+	AK314854 TSC_hg19_v1_chr3_+_23847474	49444	+	AK295354 NM_001202476	53903	+	AK057886|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##NM_152653|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##BC022332|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##AK307075|UBE2E2|7325|ubiquitin-conjugating enzyme E2E 2##AK310298|ZNF385D|79750|zinc finger protein 385D##NM_003341|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_182666|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##BC009139|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##AK314854|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1##NM_001202476|UBE2E1|7324|ubiquitin-conjugating enzyme E2E 1	0.996907	0.0	denovo_WM_7:-1:0.239	denovo_WM_7:-2:0.239	denovo_WM_7:-3:0.239	denovo_WM_7:-4:0.239
chr3	52926691	52926871	reg1002039.p1	3.729	+	NM_205853	-57547	-	AK298407 AK298412 AK298429 D38595 BC136392 BC136393 TSC_hg19_v1_chr3_-_52864689 AK303769 NM_001166449 NM_002218	-62080	-	NM_002217 TSC_hg19_v1_chr3_+_52828811 X67055 AK222757 AK298450 BC107604 BC107605 BC107814	-97982	+	TSC_hg19_v1_chr3_-_52931547 AY726591 BC047015	4668	-	TSC_hg19_v1_chr3_-_52931595 NM_001198974 NM_198563	4876	-	TSC_hg19_v1_chr3_-_53079286 NM_001005159	152528	-	NM_205853|MUSTN1|389125|musculoskeletal, embryonic nuclear protein 1##AK298407|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK298412|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK298429|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##D38595|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##BC136392|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##BC136393|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##AK303769|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_001166449|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_002218|ITIH4|3700|inter-alpha-trypsin inhibitor heavy chain family, member 4##NM_002217|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##X67055|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AK222757|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AK298450|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107604|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107605|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##BC107814|ITIH3|3699|inter-alpha-trypsin inhibitor heavy chain 3##AY726591|TMEM110|375346|transmembrane protein 110##BC047015|TMEM110|375346|transmembrane protein 110##NM_001198974|TMEM110-MUSTN1|100526772|TMEM110-MUSTN1 readthrough##NM_198563|TMEM110|375346|transmembrane protein 110##NM_001005159|SFMBT1|51460|Scm-like with four mbt domains 1	0.0	0.0	
chr6	108025683	108025812	reg1005819.p1	3.729	+	TSC_hg19_v1_chr6_+_107811320 NM_018013 BC014859	-214319	+	TSC_hg19_v1_chr6_-_107780686 AK000293 AF254956 BC039906 AK225629 AK296717 AK301480 AK315804 BC029491 NM_020381	-245017	-	BC131628 NM_001080450	-590112	-	AK303562 AK074125 TSC_hg19_v1_chr6_-_108145518 AK093571 AX748208 NM_198081	119769	-	AF100141 CU690382 CU690568 BC001153 TSC_hg19_v1_chr6_-_108279282 AK074835	253510	-	TSC_hg19_v1_chr6_-_108279316 AJ011779	253565	-	NM_018013|SOBP|55084|sine oculis binding protein homolog (Drosophila)##BC014859|SOBP|55084|sine oculis binding protein homolog (Drosophila)##AF254956|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC039906|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK225629|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK296717|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK301480|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##AK315804|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC029491|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##NM_020381|PDSS2|57107|prenyl (decaprenyl) diphosphate synthase, subunit 2##BC131628|BEND3|57673|BEN domain containing 3##NM_001080450|BEND3|57673|BEN domain containing 3##AK303562|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK074125|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AK093571|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##NM_198081|SCML4|256380|sex comb on midleg-like 4 (Drosophila)##AF100141|SEC63|11231|SEC63 homolog (S. cerevisiae)##BC001153|SEC63|11231|SEC63 homolog (S. cerevisiae)##AK074835|SEC63|11231|SEC63 homolog (S. cerevisiae)##AJ011779|SEC63|11231|SEC63 homolog (S. cerevisiae)	0.0	0.77606	CTCF.p2:58:0.776
chr10	12164978	12165158	reg1004916.p2	3.728	+	TSC_hg19_v1_chr10_+_12110968 BC002477 BC007955 AB046850 AK309810 CU675875	-54061	+	TSC_hg19_v1_chr10_+_12110952 NM_018706	-54132	+	NM_080599 TSC_hg19_v1_chr10_-_12085142	-79986	-	TSC_hg19_v1_chr10_+_12171686 NM_001142627 NM_001142628 NM_018144 AK301841 AK292295 BC026179 AF346603 AK057532 AK022640	6585	+	TSC_hg19_v1_chr10_-_12237861 AF218818 AK291131 AF155832 AF161464	72798	-	TSC_hg19_v1_chr10_+_12237965 NM_006023 D14878 AK225634	72893	+	BC002477|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##BC007955|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##AK309810|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_018706|DHTKD1|55526|dehydrogenase E1 and transketolase domain containing 1##NM_080599|UPF2|26019|UPF2 regulator of nonsense transcripts homolog (yeast)##NM_001142627|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_001142628|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##NM_018144|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK301841|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK292295|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##BC026179|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF346603|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK057532|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AK022640|SEC61A2|55176|Sec61 alpha 2 subunit (S. cerevisiae)##AF218818|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AK291131|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF155832|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##AF161464|NUDT5|11164|nudix (nucleoside diphosphate linked moiety X)-type motif 5##NM_006023|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##D14878|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)##AK225634|CDC123|8872|cell division cycle 123 homolog (S. cerevisiae)	0.267192	0.0	denovo_WM_7:106:0.267
chr12	113377013	113377158	reg1013655.p2	3.728	+	AF063613 TSC_hg19_v1_chr12_+_113376306	-745	+	TSC_hg19_v1_chr12_+_113376245 AK000608 NM_006187 BC113746 BC012015 AK292949	-835	+	TSC_hg19_v1_chr12_+_113376159 AB044545	-988	+	TSC_hg19_v1_chr12_+_113416323 NM_001032731 NM_002535 NM_016817 BC010625 BC053870 BC023637 AK292906 BC069052 BC049215 AK292796 M87284 M87434 AB590925 CU690608	39255	+	NM_004416 BC048216	118605	+	CU676985 DQ892315 EU176685 EU832646 EU832723 AB384786 BC093724 BC143258 BC143261 BC143262 BC014420 TSC_hg19_v1_chr12_-_113573548 AK309562 NM_001193521	196327	-	AF063613|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AK000608|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##NM_006187|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##BC113746|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##BC012015|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AK292949|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##AB044545|OAS3|4940|2'-5'-oligoadenylate synthetase 3, 100kDa##NM_001032731|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_002535|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_016817|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC010625|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC053870|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC023637|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292906|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC069052|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##BC049215|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##AK292796|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87284|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##M87434|OAS2|4939|2'-5'-oligoadenylate synthetase 2, 69/71kDa##NM_004416|DTX1|1840|deltex homolog 1 (Drosophila)##BC048216|DTX1|1840|deltex homolog 1 (Drosophila)##DQ892315|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU176685|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832646|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##EU832723|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC093724|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143258|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143261|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC143262|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##BC014420|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##AK309562|RASAL1|8437|RAS protein activator like 1 (GAP1 like)##NM_001193521|RASAL1|8437|RAS protein activator like 1 (GAP1 like)	1.986717	0.0	denovo_WM_7:34:0.540	denovo_WM_7:35:0.270	denovo_WM_7:49:0.329	denovo_WM_7:50:0.599
chr1	25060277	25060374	reg1000429.p2	3.728	+	TSC_hg19_v1_chr1_+_24969795 AF048977 BC017315	-90521	+	TSC_hg19_v1_chr1_+_24969792 AK302498	-90546	+	TSC_hg19_v1_chr1_+_24969763 BC011019 BC036187	-90587	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	11506	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	11608	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	11680	+	AF048977|SRRM1|10250|serine/arginine repetitive matrix 1##BC017315|SRRM1|10250|serine/arginine repetitive matrix 1##AK302498|SRRM1|10250|serine/arginine repetitive matrix 1##BC011019|SRRM1|10250|serine/arginine repetitive matrix 1##BC036187|SRRM1|10250|serine/arginine repetitive matrix 1##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4	0.996153	0.0	denovo_WM_7:-27:0.900
chr14	62229459	62229639	reg1010281.p1	3.728	+	TSC_hg19_v1_chr14_+_62229134 AK314933 NM_003082 Z47542 BC014984 U44754 BC019038 AB464223 DQ892683 DQ895926	-430	+	FJ790247 NM_001243084	-65210	+	TSC_hg19_v1_chr14_+_62162237 NM_001530 NM_181054 AK296876 AK304436 AK299551 AK304315 BX648795 BC012527 U29165 AK312397	-67359	+	AJ617628 NM_031914 BC117363 BC143598 HQ258344 AB102949	233089	+	TSC_hg19_v1_chr14_+_62584125 BX248751	354609	+	AF418206 AF472412 AF493798 NM_139318 NM_172375 BC073979	1282380	-	AK314933|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##NM_003082|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##Z47542|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC014984|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##U44754|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##BC019038|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ892683|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##DQ895926|SNAPC1|6617|small nuclear RNA activating complex, polypeptide 1, 43kDa##FJ790247|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001243084|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_001530|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##NM_181054|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK296876|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304436|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK299551|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK304315|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BX648795|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##BC012527|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##U29165|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AK312397|HIF1A|3091|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)##AJ617628|SYT16|83851|synaptotagmin XVI##NM_031914|SYT16|83851|synaptotagmin XVI##BC117363|SYT16|83851|synaptotagmin XVI##BC143598|SYT16|83851|synaptotagmin XVI##HQ258344|SYT16|83851|synaptotagmin XVI##AB102949|SYT16|83851|synaptotagmin XVI##BX248751|FLJ43390|646113|uncharacterized LOC646113##AF418206|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AF472412|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##AF493798|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_139318|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##NM_172375|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5##BC073979|KCNH5|27133|potassium voltage-gated channel, subfamily H (eag-related), member 5	0.0	0.0	
chr6	137987732	137987899	reg1005873.p2	3.728	+	BC051352 AK096362 NM_175747	-172290	-	TSC_hg19_v1_chr6_-_137540556 NM_000416	-447257	-	TSC_hg19_v1_chr6_-_137540544 BC005333	-447270	-	TSC_hg19_v1_chr6_+_138188395 AK312862 BC064689 BC098379 M59465 NM_006290 BC041790	200722	+	TSC_hg19_v1_chr6_-_138189314 AK124173	201535	-	DQ892670 EU176724 AJ251830 BC010163 AF317550 AY157578 TSC_hg19_v1_chr6_-_138428588 AK225907 AK075082 AK093516 AK314526 AX748178 AK097387 AK097958 AK074585 NM_022121	440753	-	BC051352|OLIG3|167826|oligodendrocyte transcription factor 3##AK096362|OLIG3|167826|oligodendrocyte transcription factor 3##NM_175747|OLIG3|167826|oligodendrocyte transcription factor 3##NM_000416|IFNGR1|3459|interferon gamma receptor 1##BC005333|IFNGR1|3459|interferon gamma receptor 1##AK312862|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC064689|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##M59465|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##NM_006290|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##BC041790|TNFAIP3|7128|tumor necrosis factor, alpha-induced protein 3##DQ892670|PERP|64065|PERP, TP53 apoptosis effector##EU176724|PERP|64065|PERP, TP53 apoptosis effector##AJ251830|PERP|64065|PERP, TP53 apoptosis effector##BC010163|PERP|64065|PERP, TP53 apoptosis effector##AF317550|PERP|64065|PERP, TP53 apoptosis effector##AY157578|PERP|64065|PERP, TP53 apoptosis effector##AK225907|PERP|64065|PERP, TP53 apoptosis effector##AK075082|PERP|64065|PERP, TP53 apoptosis effector##AK093516|PERP|64065|PERP, TP53 apoptosis effector##AK314526|PERP|64065|PERP, TP53 apoptosis effector##AK097387|PERP|64065|PERP, TP53 apoptosis effector##AK097958|PERP|64065|PERP, TP53 apoptosis effector##AK074585|PERP|64065|PERP, TP53 apoptosis effector##NM_022121|PERP|64065|PERP, TP53 apoptosis effector	0.0	0.0	
chr6	36972984	36973066	reg1009141.p1	3.728	+	TSC_hg19_v1_chr6_-_36954224 AK315067	-18755	-	AK022783 TSC_hg19_v1_chr6_-_36953950 AF176006 AF192559 BC125055 BC153873 NM_014341 BC110914	-19048	-	TSC_hg19_v1_chr6_-_36953944 BC125056	-19082	-	TSC_hg19_v1_chr6_+_36973430 BC062363 BC023645 NM_173558 AK290419 AK301156 AK092732 AK300964 AX747694 AK024456 BC053655 BX648164 DQ893612 DQ894928	476	+	TSC_hg19_v1_chr6_+_37137953 NM_001243186 NM_002648 M54915 BC020224 M24779 M16750 CU676514 AB528988 AK301158	165097	+	TSC_hg19_v1_chr6_-_37225372 BC026012 AK098666 BC029657 NM_145316	252361	-	AK315067|MTCH1|23787|mitochondrial carrier 1##AK022783|MTCH1|23787|mitochondrial carrier 1##AF176006|MTCH1|23787|mitochondrial carrier 1##AF192559|MTCH1|23787|mitochondrial carrier 1##BC125055|MTCH1|23787|mitochondrial carrier 1##BC153873|MTCH1|23787|mitochondrial carrier 1##NM_014341|MTCH1|23787|mitochondrial carrier 1##BC110914|MTCH1|23787|mitochondrial carrier 1##BC125056|MTCH1|23787|mitochondrial carrier 1##BC062363|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC023645|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_173558|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK290419|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK301156|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK092732|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK300964|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##AK024456|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BC053655|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##BX648164|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ893612|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##DQ894928|FGD2|221472|FYVE, RhoGEF and PH domain containing 2##NM_001243186|PIM1|5292|pim-1 oncogene##NM_002648|PIM1|5292|pim-1 oncogene##M54915|PIM1|5292|pim-1 oncogene##BC020224|PIM1|5292|pim-1 oncogene##M24779|PIM1|5292|pim-1 oncogene##M16750|PIM1|5292|pim-1 oncogene##AK301158|PIM1|5292|pim-1 oncogene##BC026012|TMEM217|221468|transmembrane protein 217##AK098666|TMEM217|221468|transmembrane protein 217##BC029657|TMEM217|221468|transmembrane protein 217##NM_145316|TMEM217|221468|transmembrane protein 217	1.087423	0.0	
chr7	17199168	17199266	reg1014440.p1	3.728	+	AY359065 BC058284 NM_176813	-277613	-	BC015503 AF115926 AF038451 AK296721 AK312942 TSC_hg19_v1_chr7_-_16844620 AK223067 AF088867 AF087879 AY359009 NM_006408	-354546	-	TSC_hg19_v1_chr7_+_16793401 AK093487 NM_014399 AK026587 AK075475 AK316595 AY358995 AF100759 BC033863 AF120265 DQ892059 DQ895252 CR542107	-405761	+	TSC_hg19_v1_chr7_+_17338275 AK307495 NM_001621 D16354 BC070080	139052	+	TSC_hg19_v1_chr7_+_17382906 BC021696	183689	+	TSC_hg19_v1_chr7_-_17980080 AK001861 BC041844 AB018256 AF420470 BC045667	780832	-	AY359065|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC058284|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##NM_176813|AGR3|155465|anterior gradient 3 homolog (Xenopus laevis)##BC015503|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF115926|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF038451|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK296721|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK312942|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK223067|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF088867|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AF087879|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AY359009|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##NM_006408|AGR2|10551|anterior gradient 2 homolog (Xenopus laevis)##AK093487|TSPAN13|27075|tetraspanin 13##NM_014399|TSPAN13|27075|tetraspanin 13##AK026587|TSPAN13|27075|tetraspanin 13##AK075475|TSPAN13|27075|tetraspanin 13##AK316595|TSPAN13|27075|tetraspanin 13##AY358995|TSPAN13|27075|tetraspanin 13##AF100759|TSPAN13|27075|tetraspanin 13##BC033863|TSPAN13|27075|tetraspanin 13##AF120265|TSPAN13|27075|tetraspanin 13##DQ892059|TSPAN13|27075|tetraspanin 13##DQ895252|TSPAN13|27075|tetraspanin 13##CR542107|TSPAN13|27075|tetraspanin 13##AK307495|AHR|196|aryl hydrocarbon receptor##NM_001621|AHR|196|aryl hydrocarbon receptor##D16354|AHR|196|aryl hydrocarbon receptor##BC070080|AHR|196|aryl hydrocarbon receptor##BC021696|AHR|196|aryl hydrocarbon receptor##AK001861|SNX13|23161|sorting nexin 13##BC041844|SNX13|23161|sorting nexin 13##AB018256|SNX13|23161|sorting nexin 13##AF420470|SNX13|23161|sorting nexin 13##BC045667|SNX13|23161|sorting nexin 13	0.0	0.0	
chr10	24670845	24671025	reg1003261.p1	3.727	+	TSC_hg19_v1_chr10_+_24498095 AL833280 BC136521 BC144227	-172841	+	AK091142 AX746804 NM_001098501 NM_019590 TSC_hg19_v1_chr10_+_24497850	-173147	+	AB033043 NM_001098500 TSC_hg19_v1_chr10_+_23983680	-687258	+	TSC_hg19_v1_chr10_+_24755441 AK300422	84509	+	BX640796 BX648451 TSC_hg19_v1_chr10_+_24755461 BC098577	84534	+	AK307604 TSC_hg19_v1_chr10_-_25012174	341238	-	AL833280|KIAA1217|56243|KIAA1217##BC136521|KIAA1217|56243|KIAA1217##BC144227|KIAA1217|56243|KIAA1217##AK091142|KIAA1217|56243|KIAA1217##NM_001098501|KIAA1217|56243|KIAA1217##NM_019590|KIAA1217|56243|KIAA1217##AB033043|KIAA1217|56243|KIAA1217##NM_001098500|KIAA1217|56243|KIAA1217##AK300422|KIAA1217|56243|KIAA1217##BX640796|KIAA1217|56243|KIAA1217##BX648451|KIAA1217|56243|KIAA1217##BC098577|KIAA1217|56243|KIAA1217##AK307604|ARHGAP21|57584|Rho GTPase activating protein 21	0.997033	0.0	denovo_WM_7:18:0.940
chr1	14085625	14085742	reg1016772.p1	3.727	+	AK293725 AK311678 TSC_hg19_v1_chr1_+_14075931 BC051275 U23736	-9742	+	AK308135 TSC_hg19_v1_chr1_+_14075930 AK300441 BC140012	-9760	+	TSC_hg19_v1_chr1_+_14075909 NM_001007257 BC032768 D45132 AB208877 AK307377 BX647310	-9798	+	TSC_hg19_v1_chr1_+_14925186 AB028949 AY505119 NM_015209 NM_201628	839511	+	TSC_hg19_v1_chr1_+_15250637 AY505120 NM_001018000 BC035501	1165036	+	AY505121 NM_001018001	1170612	+	AK293725|PRDM2|7799|PR domain containing 2, with ZNF domain##AK311678|PRDM2|7799|PR domain containing 2, with ZNF domain##U23736|PRDM2|7799|PR domain containing 2, with ZNF domain##AK308135|PRDM2|7799|PR domain containing 2, with ZNF domain##AK300441|PRDM2|7799|PR domain containing 2, with ZNF domain##BC140012|PRDM2|7799|PR domain containing 2, with ZNF domain##NM_001007257|PRDM2|7799|PR domain containing 2, with ZNF domain##BC032768|PRDM2|7799|PR domain containing 2, with ZNF domain##D45132|PRDM2|7799|PR domain containing 2, with ZNF domain##AB208877|PRDM2|7799|PR domain containing 2, with ZNF domain##AK307377|PRDM2|7799|PR domain containing 2, with ZNF domain##BX647310|PRDM2|7799|PR domain containing 2, with ZNF domain##AB028949|KAZN|23254|kazrin, periplakin interacting protein##AY505119|KAZN|23254|kazrin, periplakin interacting protein##NM_015209|KAZN|23254|kazrin, periplakin interacting protein##NM_201628|KAZN|23254|kazrin, periplakin interacting protein##AY505120|KAZN|23254|kazrin, periplakin interacting protein##NM_001018000|KAZN|23254|kazrin, periplakin interacting protein##BC035501|KAZN|23254|kazrin, periplakin interacting protein##AY505121|KAZN|23254|kazrin, periplakin interacting protein##NM_001018001|KAZN|23254|kazrin, periplakin interacting protein	0.997902	0.0	denovo_WM_7:-15:0.298	denovo_WM_7:-16:0.298	denovo_WM_7:-17:0.298
chr1	245837555	245837661	reg1018112.p1	3.727	+	TSC_hg19_v1_chr1_+_245318286 AK125187 AY923834 NM_018012 AK297303 AK293964	-519300	+	TSC_hg19_v1_chr1_+_245133706 AK302883 AK001393 BC005357	-703925	+	TSC_hg19_v1_chr1_+_245133633 NM_001143943	-703978	+	AK024733 NM_022743	743103	-	AB527580 CU689074 DQ892580 DQ895797 TSC_hg19_v1_chr1_-_246670577 BC031010	832946	-	TSC_hg19_v1_chr1_-_246670600 AB057595 BC107725 AK289605	833000	-	AK125187|KIF26B|55083|kinesin family member 26B##AY923834|KIF26B|55083|kinesin family member 26B##NM_018012|KIF26B|55083|kinesin family member 26B##AK297303|KIF26B|55083|kinesin family member 26B##AK293964|KIF26B|55083|kinesin family member 26B##AK302883|EFCAB2|84288|EF-hand calcium binding domain 2##AK001393|EFCAB2|84288|EF-hand calcium binding domain 2##BC005357|EFCAB2|84288|EF-hand calcium binding domain 2##NM_001143943|EFCAB2|84288|EF-hand calcium binding domain 2##AK024733|SMYD3|64754|SET and MYND domain containing 3##NM_022743|SMYD3|64754|SET and MYND domain containing 3##DQ892580|SMYD3|64754|SET and MYND domain containing 3##DQ895797|SMYD3|64754|SET and MYND domain containing 3##BC031010|SMYD3|64754|SET and MYND domain containing 3##AB057595|SMYD3|64754|SET and MYND domain containing 3##BC107725|SMYD3|64754|SET and MYND domain containing 3##AK289605|SMYD3|64754|SET and MYND domain containing 3	0.0	0.0	
chr12	49737373	49737532	reg1012176.p1	3.727	+	BC110812 AF466366 NM_001008223	-6489	-	NM_001100620 NM_005480 TSC_hg19_v1_chr12_+_49717037 AK315211 AK296811 AK309716 AK310709 AK299302 BC032583 BC018627 BC011597	-20416	+	NM_006262 TSC_hg19_v1_chr12_+_49688929 BC032703 AB528454 CU689492 DQ893358 DQ896677	-48507	+	TSC_hg19_v1_chr12_+_49740718 AK055747	3251	+	BC033236 NM_024902	3588	+	TSC_hg19_v1_chr12_+_49760679 AK095582 NM_023071	23237	+	BC110812|C1QL4|338761|complement component 1, q subcomponent-like 4##AF466366|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001008223|C1QL4|338761|complement component 1, q subcomponent-like 4##NM_001100620|TROAP|10024|trophinin associated protein (tastin)##NM_005480|TROAP|10024|trophinin associated protein (tastin)##AK315211|TROAP|10024|trophinin associated protein (tastin)##AK296811|TROAP|10024|trophinin associated protein (tastin)##AK309716|TROAP|10024|trophinin associated protein (tastin)##AK310709|TROAP|10024|trophinin associated protein (tastin)##AK299302|TROAP|10024|trophinin associated protein (tastin)##BC032583|TROAP|10024|trophinin associated protein (tastin)##BC018627|TROAP|10024|trophinin associated protein (tastin)##BC011597|TROAP|10024|trophinin associated protein (tastin)##NM_006262|PRPH|5630|peripherin##BC032703|PRPH|5630|peripherin##DQ893358|PRPH|5630|peripherin##DQ896677|PRPH|5630|peripherin##AK055747|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##BC033236|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##NM_024902|DNAJC22|79962|DnaJ (Hsp40) homolog, subfamily C, member 22##AK095582|SPATS2|65244|spermatogenesis associated, serine-rich 2##NM_023071|SPATS2|65244|spermatogenesis associated, serine-rich 2	2.806322	0.0	denovo_WM_7:75:0.835
chr15	83512379	83512514	reg1011457.p1	3.727	+	TSC_hg19_v1_chr15_+_83478391 AK126887 AB075851	-34075	+	NM_001080435	-34474	+	BC130569 BC144175 BC144181 NM_001007122 AK122875 AL833295	-37634	-	AF081530 TSC_hg19_v1_chr15_-_83621443 AK292772 BC012109 NM_004839 NM_199330	108976	-	TSC_hg19_v1_chr15_-_83654854 AK097109	142413	-	NM_031452 TSC_hg19_v1_chr15_+_83654965 BC112329 AK027095 BC003627 BC027181	142532	+	AK126887|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##AB075851|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##NM_001080435|WHAMM|123720|WAS protein homolog associated with actin, golgi membranes and microtubules##BC130569|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144175|FSD2|123722|fibronectin type III and SPRY domain containing 2##BC144181|FSD2|123722|fibronectin type III and SPRY domain containing 2##NM_001007122|FSD2|123722|fibronectin type III and SPRY domain containing 2##AK122875|FSD2|123722|fibronectin type III and SPRY domain containing 2##AL833295|FSD2|123722|fibronectin type III and SPRY domain containing 2##AF081530|HOMER2|9455|homer homolog 2 (Drosophila)##AK292772|HOMER2|9455|homer homolog 2 (Drosophila)##BC012109|HOMER2|9455|homer homolog 2 (Drosophila)##NM_004839|HOMER2|9455|homer homolog 2 (Drosophila)##NM_199330|HOMER2|9455|homer homolog 2 (Drosophila)##AK097109|LOC100131860|100131860|uncharacterized LOC100131860##NM_031452|FAM103A1|83640|family with sequence similarity 103, member A1##BC112329|FAM103A1|83640|family with sequence similarity 103, member A1##AK027095|FAM103A1|83640|family with sequence similarity 103, member A1##BC003627|FAM103A1|83640|family with sequence similarity 103, member A1##BC027181|FAM103A1|83640|family with sequence similarity 103, member A1	0.0	0.0	
chr17_ctg5_hap1	599846	599961	reg1010186.p2	3.727	+	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	1.910191	0.0	denovo_WM_7:13:0.891	denovo_WM_7:28:0.301	denovo_WM_7:29:0.308	denovo_WM_7:30:0.314
chr18	56199171	56199283	reg1013672.p1	3.727	+	TSC_hg19_v1_chr18_+_55888838 AF210730 AY243321	-310377	+	TSC_hg19_v1_chr18_+_55888802 AK300444	-310424	+	TSC_hg19_v1_chr18_+_55888753 NM_001144966 AY243319	-310465	+	BX647796 NM_052947	96961	-	AF316597 NM_006785 NM_173844 TSC_hg19_v1_chr18_+_56338657 AK291386	139414	+	TSC_hg19_v1_chr18_+_56338693 AF130356 BC030143	139501	+	AF210730|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243321|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AK300444|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##NM_001144966|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##AY243319|NEDD4L|23327|neural precursor cell expressed, developmentally down-regulated 4-like##BX647796|ALPK2|115701|alpha-kinase 2##NM_052947|ALPK2|115701|alpha-kinase 2##AF316597|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_006785|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##NM_173844|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AK291386|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##AF130356|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1##BC030143|MALT1|10892|mucosa associated lymphoid tissue lymphoma translocation gene 1	1.977067	0.0	denovo_WM_7:-36:0.709	denovo_WM_7:-51:0.790
chr19	18633658	18633807	reg1012183.p2	3.727	+	TSC_hg19_v1_chr19_-_18632948 BC049195 NM_006532	-805	-	AB208794 TSC_hg19_v1_chr19_-_18632875 AK293105 AK225481 U16282	-866	-	AK296022 TSC_hg19_v1_chr19_-_18548975 AK092179 AX747394 NM_001170938 NM_016368	-84692	-	TSC_hg19_v1_chr19_-_18653874 AK300571	20045	-	TSC_hg19_v1_chr19_-_18654341 AY278607 AK313363 BX647720	20591	-	TSC_hg19_v1_chr19_-_18654384 BX538124 BX647405 GQ372970 NM_012181	20650	-	BC049195|ELL|8178|elongation factor RNA polymerase II##NM_006532|ELL|8178|elongation factor RNA polymerase II##AB208794|ELL|8178|elongation factor RNA polymerase II##AK293105|ELL|8178|elongation factor RNA polymerase II##AK225481|ELL|8178|elongation factor RNA polymerase II##U16282|ELL|8178|elongation factor RNA polymerase II##AK296022|ISYNA1|51477|inositol-3-phosphate synthase 1##AK092179|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_001170938|ISYNA1|51477|inositol-3-phosphate synthase 1##NM_016368|ISYNA1|51477|inositol-3-phosphate synthase 1##AK300571|FKBP8|23770|FK506 binding protein 8, 38kDa##AY278607|FKBP8|23770|FK506 binding protein 8, 38kDa##AK313363|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647720|FKBP8|23770|FK506 binding protein 8, 38kDa##BX538124|FKBP8|23770|FK506 binding protein 8, 38kDa##BX647405|FKBP8|23770|FK506 binding protein 8, 38kDa##GQ372970|FKBP8|23770|FK506 binding protein 8, 38kDa##NM_012181|FKBP8|23770|FK506 binding protein 8, 38kDa	1.591217	0.0	denovo_WM_7:80:0.283	denovo_WM_7:-85:0.218	denovo_WM_7:95:0.844
chr19	47940013	47940129	reg1018160.p2	3.727	+	TSC_hg19_v1_chr19_-_47922785 NM_001009813 NM_020160	-17308	-	TSC_hg19_v1_chr19_-_47922468 BC025404	-17565	-	TSC_hg19_v1_chr19_-_47922396 BC069251	-17673	-	TSC_hg19_v1_chr19_-_47975151 AK293836 AB029010 AK293860 AK293457	35076	-	TSC_hg19_v1_chr19_-_47975247 AK302552 NM_015063	35204	-	TSC_hg19_v1_chr19_-_47987466 AK298672 BC009249 AF105369 AK225419 AK023996	47371	-	NM_001009813|MEIS3|56917|Meis homeobox 3##NM_020160|MEIS3|56917|Meis homeobox 3##BC025404|MEIS3|56917|Meis homeobox 3##BC069251|MEIS3|56917|Meis homeobox 3##AK293836|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AB029010|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK293860|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK293457|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK302552|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##NM_015063|SLC8A2|6543|solute carrier family 8 (sodium/calcium exchanger), member 2##AK298672|KPTN|11133|kaptin (actin binding protein)##BC009249|KPTN|11133|kaptin (actin binding protein)##AF105369|KPTN|11133|kaptin (actin binding protein)##AK225419|KPTN|11133|kaptin (actin binding protein)##AK023996|KPTN|11133|kaptin (actin binding protein)	0.0	0.995842	CTCF.p2:-3:0.996
chr7	50321611	50321791	reg1005594.p1	3.727	+	NM_001161834	-186020	+	BT006822 DQ890629 DQ893797 TSC_hg19_v1_chr7_-_50132817 BC005223 D17570 AK312799 NM_001159878 NM_007009	-188877	-	TSC_hg19_v1_chr7_+_49813233 AY358393 NM_198570 BC110857	-508431	+	TSC_hg19_v1_chr7_+_50344311 BC064594 AY377974 NM_001220765 NM_001220766 NM_001220767 NM_001220768 NM_001220769 NM_001220770 NM_001220771 NM_001220772 NM_001220773 NM_001220774 NM_001220775 NM_001220776 NM_006060 U40462	22652	+	TSC_hg19_v1_chr7_+_50348343 AK303586 AK308411 BC018349 AF180297	26618	+	BC051867 TSC_hg19_v1_chr7_-_50518046 AK308136 AK023142 AK027537 NM_001042762 NM_022116	196353	-	NM_001161834|C7orf72|100130988|chromosome 7 open reading frame 72##BT006822|ZPBP|11055|zona pellucida binding protein##DQ890629|ZPBP|11055|zona pellucida binding protein##DQ893797|ZPBP|11055|zona pellucida binding protein##BC005223|ZPBP|11055|zona pellucida binding protein##D17570|ZPBP|11055|zona pellucida binding protein##AK312799|ZPBP|11055|zona pellucida binding protein##NM_001159878|ZPBP|11055|zona pellucida binding protein##NM_007009|ZPBP|11055|zona pellucida binding protein##AY358393|VWC2|375567|von Willebrand factor C domain containing 2##NM_198570|VWC2|375567|von Willebrand factor C domain containing 2##BC110857|VWC2|375567|von Willebrand factor C domain containing 2##BC064594|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##AY377974|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220765|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220766|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220767|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220768|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220769|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220770|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220771|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220772|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220773|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220774|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220775|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_001220776|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##NM_006060|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##U40462|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##AK303586|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##AK308411|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##BC018349|IKZF1|10320|IKAROS family zinc finger 1 (Ikaros)##BC051867|FIGNL1|63979|fidgetin-like 1##AK308136|FIGNL1|63979|fidgetin-like 1##AK023142|FIGNL1|63979|fidgetin-like 1##AK027537|FIGNL1|63979|fidgetin-like 1##NM_001042762|FIGNL1|63979|fidgetin-like 1##NM_022116|FIGNL1|63979|fidgetin-like 1	0.0	0.0	
chr1	145436813	145436898	reg1010741.p1	3.726	+	NM_145277 NM_202004 NM_213652 NM_213653 AK223575 AK092682 AK315852 AX747669 BC017926 AK096905 AK290831 AK292742 AK092692 AK124273 AX747673 BC085604	-23592	+	AY894562 AY894570 NM_001039703	-143554	+	TSC_hg19_v1_chr1_+_145209107 NM_203458 BC010154 AK075065 BC090943 BC019835 AK092351 AK098372 AX747492 BC065219 AK293876 BC084572	-227734	+	TSC_hg19_v1_chr1_+_145438489 NM_006472 AK301203 BX537824 AK226090 S73591 BC093702 BC093704 AB527234 AY594328 BC024305 AK301148	1821	+	TSC_hg19_v1_chr1_-_145470375 AK092209 AK056984 BC004355 NM_032305 BC050418	33533	-	AK128050 NM_001039888 TSC_hg19_v1_chr1_+_145470529	33663	+	NM_145277|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_202004|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213652|HFE2|148738|hemochromatosis type 2 (juvenile)##NM_213653|HFE2|148738|hemochromatosis type 2 (juvenile)##AK223575|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092682|HFE2|148738|hemochromatosis type 2 (juvenile)##AK315852|HFE2|148738|hemochromatosis type 2 (juvenile)##BC017926|HFE2|148738|hemochromatosis type 2 (juvenile)##AK096905|HFE2|148738|hemochromatosis type 2 (juvenile)##AK290831|HFE2|148738|hemochromatosis type 2 (juvenile)##AK292742|HFE2|148738|hemochromatosis type 2 (juvenile)##AK092692|HFE2|148738|hemochromatosis type 2 (juvenile)##AK124273|HFE2|148738|hemochromatosis type 2 (juvenile)##BC085604|HFE2|148738|hemochromatosis type 2 (juvenile)##AY894562|NBPF8|728841|neuroblastoma breakpoint family, member 8##AY894570|NBPF8|728841|neuroblastoma breakpoint family, member 8##NM_001039703|NBPF10|100132406|neuroblastoma breakpoint family, member 10##NM_203458|NOTCH2NL|388677|notch 2 N-terminal like##BC010154|NOTCH2NL|388677|notch 2 N-terminal like##AK075065|NOTCH2NL|388677|notch 2 N-terminal like##BC090943|NOTCH2NL|388677|notch 2 N-terminal like##BC019835|NOTCH2NL|388677|notch 2 N-terminal like##BC065219|NOTCH2NL|388677|notch 2 N-terminal like##BC084572|NOTCH2NL|388677|notch 2 N-terminal like##NM_006472|TXNIP|10628|thioredoxin interacting protein##AK301203|TXNIP|10628|thioredoxin interacting protein##BX537824|TXNIP|10628|thioredoxin interacting protein##AK226090|TXNIP|10628|thioredoxin interacting protein##S73591|TXNIP|10628|thioredoxin interacting protein##BC093702|TXNIP|10628|thioredoxin interacting protein##BC093704|TXNIP|10628|thioredoxin interacting protein##AY594328|TXNIP|10628|thioredoxin interacting protein##BC024305|TXNIP|10628|thioredoxin interacting protein##AK301148|TXNIP|10628|thioredoxin interacting protein##AK092209|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK056984|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC004355|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##NM_032305|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##BC050418|POLR3GL|84265|polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like##AK128050|ANKRD34A|284615|ankyrin repeat domain 34A##NM_001039888|ANKRD34A|284615|ankyrin repeat domain 34A	0.994992	0.0	denovo_WM_7:39:0.332	denovo_WM_7:40:0.332	denovo_WM_7:41:0.332
chr11	50649529	50649621	reg1015744.p1	3.726	+	BC136850 BC136851 NM_001005270	-645505	-	BC137005 NM_001001955	-675633	+	TSC_hg19_v1_chr11_-_49230053 DQ088979 AF176574 BC025672 AK312366 AK295368 AK295470 AK300532 M99487 NM_001014986 NM_001193471 NM_001193472 NM_001193473 NM_004476 S76978	-1419468	-	BC140750 NM_001005272	762872	-	NM_001004703	865706	+	AF521869 BC001862 NM_024114	4380082	+	BC136850|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC136851|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##NM_001005270|OR4C12|283093|olfactory receptor, family 4, subfamily C, member 12##BC137005|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##NM_001001955|OR4C13|283092|olfactory receptor, family 4, subfamily C, member 13##DQ088979|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AF176574|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC025672|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK312366|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295368|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK295470|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##AK300532|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##M99487|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001014986|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193471|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193472|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_001193473|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##NM_004476|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##S76978|FOLH1|2346|folate hydrolase (prostate-specific membrane antigen) 1##BC140750|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001005272|OR4A5|81318|olfactory receptor, family 4, subfamily A, member 5##NM_001004703|OR4C46|119749|olfactory receptor, family 4, subfamily C, member 46##AF521869|TRIM48|79097|tripartite motif containing 48##BC001862|TRIM48|79097|tripartite motif containing 48##NM_024114|TRIM48|79097|tripartite motif containing 48	0.0	0.0	
chr12	26951058	26951144	reg1018493.p1	3.726	+	AK304667 NM_005086 AK314353 AL136756 BC062299 AB528239 AM392675 AM392714 AF016028 DQ897666 EU433933 X89105	-602516	+	NM_001135823 AK092925 TSC_hg19_v1_chr12_+_26348312	-602810	+	TSC_hg19_v1_chr12_-_26277832 AY665467 AK303677 AB044088 BC025968 NM_030762	-673180	-	TSC_hg19_v1_chr12_-_26986127 AK307712 D26350 NM_002223	34979	-	TSC_hg19_v1_chr12_-_27090914 AK001492 BC008368 AK225336 AK297948 AK001499 BC003081	139808	-	TSC_hg19_v1_chr12_-_27091213 NM_018164	140129	-	AK304667|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_005086|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK314353|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AL136756|SSPN|8082|sarcospan (Kras oncogene-associated gene)##BC062299|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392675|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AM392714|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AF016028|SSPN|8082|sarcospan (Kras oncogene-associated gene)##DQ897666|SSPN|8082|sarcospan (Kras oncogene-associated gene)##EU433933|SSPN|8082|sarcospan (Kras oncogene-associated gene)##X89105|SSPN|8082|sarcospan (Kras oncogene-associated gene)##NM_001135823|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AK092925|SSPN|8082|sarcospan (Kras oncogene-associated gene)##AY665467|BHLHE41|79365|basic helix-loop-helix family, member e41##AK303677|BHLHE41|79365|basic helix-loop-helix family, member e41##AB044088|BHLHE41|79365|basic helix-loop-helix family, member e41##BC025968|BHLHE41|79365|basic helix-loop-helix family, member e41##NM_030762|BHLHE41|79365|basic helix-loop-helix family, member e41##AK307712|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##D26350|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##NM_002223|ITPR2|3709|inositol 1,4,5-trisphosphate receptor, type 2##AK001492|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC008368|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK225336|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK297948|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##AK001499|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##BC003081|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)##NM_018164|ASUN|55726|asunder, spermatogenesis regulator homolog (Drosphila)	0.403219	0.0	denovo_WM_7:51:0.403
chr15	64098360	64098435	reg1017306.p1	3.726	+	BC017581 BC036918 AK093077 TSC_hg19_v1_chr15_-_63893135	-205355	-	NM_203373 AK096945 BC065833 AM392805 AM393002 AM393163 AM393334 AM393873 AB587479	-208818	+	AK301236 TSC_hg19_v1_chr15_+_63796833 BC065300 NM_006537 AY461579 BC100029 AF073344 BC107137 BC107138 AK300948 AK301563 BC018113 BX647760 AB384940 DQ891025 DQ894205 BT007269 AK307810	-301520	+	TSC_hg19_v1_chr15_-_64126081 U50078	27687	-	TSC_hg19_v1_chr15_-_64126125 AK310519 BC017384	27723	-	TSC_hg19_v1_chr15_-_64126148 AK296690 NM_003922	27743	-	BC017581|LOC100130855|100130855|uncharacterized LOC100130855##BC036918|LOC100130855|100130855|uncharacterized LOC100130855##AK093077|LOC100130855|100130855|uncharacterized LOC100130855##NM_203373|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK096945|FBXL22|283807|F-box and leucine-rich repeat protein 22##BC065833|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM392805|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393002|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393163|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393334|FBXL22|283807|F-box and leucine-rich repeat protein 22##AM393873|FBXL22|283807|F-box and leucine-rich repeat protein 22##AK301236|USP3|9960|ubiquitin specific peptidase 3##BC065300|USP3|9960|ubiquitin specific peptidase 3##NM_006537|USP3|9960|ubiquitin specific peptidase 3##AY461579|USP3|9960|ubiquitin specific peptidase 3##BC100029|USP3|9960|ubiquitin specific peptidase 3##AF073344|USP3|9960|ubiquitin specific peptidase 3##BC107137|USP3|9960|ubiquitin specific peptidase 3##BC107138|USP3|9960|ubiquitin specific peptidase 3##AK300948|USP3|9960|ubiquitin specific peptidase 3##AK301563|USP3|9960|ubiquitin specific peptidase 3##BC018113|USP3|9960|ubiquitin specific peptidase 3##BX647760|USP3|9960|ubiquitin specific peptidase 3##DQ891025|USP3|9960|ubiquitin specific peptidase 3##DQ894205|USP3|9960|ubiquitin specific peptidase 3##BT007269|USP3|9960|ubiquitin specific peptidase 3##AK307810|USP3|9960|ubiquitin specific peptidase 3##U50078|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK310519|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##AK296690|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1##NM_003922|HERC1|8925|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1	0.990419	0.0	denovo_WM_7:-23:0.221	denovo_WM_7:-25:0.694
chr17	40177047	40177156	reg1003080.p2	3.726	+	TSC_hg19_v1_chr17_+_40172124 AK027265 AK297975 AK054571 BC007316 BC007450	-4955	+	NM_001144927 NM_001144928 NM_001144929 NM_017595 TSC_hg19_v1_chr17_+_40172107	-5003	+	BX647209 NM_003315	-7409	-	NM_001242704	12942	-	BC014949 AK296840 AK300900 AK021416 AK225549 NM_024119	87617	-	TSC_hg19_v1_chr17_-_40273386 AB527835 AF029777 BC032743 BC105977 BC039907 NM_021078	96248	-	AK027265|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##AK297975|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##AK054571|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC007316|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BC007450|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144927|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144928|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_001144929|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##NM_017595|NKIRAS2|28511|NFKB inhibitor interacting Ras-like 2##BX647209|DNAJC7|7266|DnaJ (Hsp40) homolog, subfamily C, member 7##NM_003315|DNAJC7|7266|DnaJ (Hsp40) homolog, subfamily C, member 7##NM_001242704|ZNF385C|201181|zinc finger protein 385C##BC014949|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK296840|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK300900|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK021416|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AK225549|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##NM_024119|DHX58|79132|DEXH (Asp-Glu-X-His) box polypeptide 58##AF029777|KAT2A|2648|K(lysine) acetyltransferase 2A##BC032743|KAT2A|2648|K(lysine) acetyltransferase 2A##BC105977|KAT2A|2648|K(lysine) acetyltransferase 2A##BC039907|KAT2A|2648|K(lysine) acetyltransferase 2A##NM_021078|KAT2A|2648|K(lysine) acetyltransferase 2A	0.0	0.994629	CTCF.p2:7:0.995
chr4	12928388	12928490	reg1016563.p2	3.726	+	BC025735 BC057803 NM_005114 TSC_hg19_v1_chr4_-_11430563	-1497907	-	BC137553 BC137556 AK093001 AX747849 NM_052964 AB110420	-2242038	-	TSC_hg19_v1_chr4_-_10459036 BC111484 BC067880 BC040874 NM_053042	-2469429	-	TSC_hg19_v1_chr4_-_13485956 BC018067 BC035054	557512	-	TSC_hg19_v1_chr4_-_13485965 NM_001017979 NM_001159601 NM_004249	557536	-	AB463932 AF009801 EU446467 BC111966 NM_001189	617636	-	BC025735|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC057803|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##NM_005114|HS3ST1|9957|heparan sulfate (glucosamine) 3-O-sulfotransferase 1##BC137553|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC137556|CLNK|116449|cytokine-dependent hematopoietic cell linker##AK093001|CLNK|116449|cytokine-dependent hematopoietic cell linker##NM_052964|CLNK|116449|cytokine-dependent hematopoietic cell linker##AB110420|CLNK|116449|cytokine-dependent hematopoietic cell linker##BC067880|ZNF518B|85460|zinc finger protein 518B##BC040874|ZNF518B|85460|zinc finger protein 518B##NM_053042|ZNF518B|85460|zinc finger protein 518B##BC018067|RAB28|9364|RAB28, member RAS oncogene family##BC035054|RAB28|9364|RAB28, member RAS oncogene family##NM_001017979|RAB28|9364|RAB28, member RAS oncogene family##NM_001159601|RAB28|9364|RAB28, member RAS oncogene family##NM_004249|RAB28|9364|RAB28, member RAS oncogene family##AF009801|NKX3-2|579|NK3 homeobox 2##EU446467|NKX3-2|579|NK3 homeobox 2##BC111966|NKX3-2|579|NK3 homeobox 2##NM_001189|NKX3-2|579|NK3 homeobox 2	0.0	0.0	
chr9	117302337	117302435	reg1015325.p1	3.726	+	BC142684 TSC_hg19_v1_chr9_-_117267731 AK056190 BC142614 NM_001173425 NM_015404	-34656	-	AL110228 NM_001083885	-36913	-	AY703039 AK126136 TSC_hg19_v1_chr9_-_117160753	-141635	-	NM_004888 TSC_hg19_v1_chr9_+_117350048 BC003564 AF038954 BC008452	47652	+	TSC_hg19_v1_chr9_+_117350103 CU678965 CR456971 CR542237	47721	+	TSC_hg19_v1_chr9_+_117373735 NM_153045 AK289383 BC107133 BC107134 BX649023	71383	+	BC142684|DFNB31|25861|deafness, autosomal recessive 31##AK056190|DFNB31|25861|deafness, autosomal recessive 31##BC142614|DFNB31|25861|deafness, autosomal recessive 31##NM_001173425|DFNB31|25861|deafness, autosomal recessive 31##NM_015404|DFNB31|25861|deafness, autosomal recessive 31##AL110228|DFNB31|25861|deafness, autosomal recessive 31##NM_001083885|DFNB31|25861|deafness, autosomal recessive 31##AY703039|AKNA|80709|AT-hook transcription factor##AK126136|AKNA|80709|AT-hook transcription factor##NM_004888|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC003564|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##AF038954|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##BC008452|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR456971|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##CR542237|ATP6V1G1|9550|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1##NM_153045|C9orf91|203197|chromosome 9 open reading frame 91##AK289383|C9orf91|203197|chromosome 9 open reading frame 91##BC107133|C9orf91|203197|chromosome 9 open reading frame 91##BC107134|C9orf91|203197|chromosome 9 open reading frame 91##BX649023|C9orf91|203197|chromosome 9 open reading frame 91	0.0	0.0	
chr10	81962835	81962921	reg1014570.p1	3.725	+	TSC_hg19_v1_chr10_+_81892497 HQ258029 EU446996	-70373	+	BC117332 BC117334 TSC_hg19_v1_chr10_+_81892485	-70421	+	BC066348 BC090922 NM_001012973	-70621	+	BC007564 TSC_hg19_v1_chr10_-_81965258 L19605 AB209770	2315	-	TSC_hg19_v1_chr10_-_81965287 AK298362	2403	-	TSC_hg19_v1_chr10_-_81965288 AK222918	2411	-	HQ258029|PLAC9|219348|placenta-specific 9##EU446996|PLAC9|219348|placenta-specific 9##BC117332|PLAC9|219348|placenta-specific 9##BC117334|PLAC9|219348|placenta-specific 9##BC066348|PLAC9|219348|placenta-specific 9##BC090922|PLAC9|219348|placenta-specific 9##NM_001012973|PLAC9|219348|placenta-specific 9##BC007564|ANXA11|311|annexin A11##L19605|ANXA11|311|annexin A11##AB209770|ANXA11|311|annexin A11##AK298362|ANXA11|311|annexin A11##AK222918|ANXA11|311|annexin A11	0.9946	0.0	
chr15	59067028	59067130	reg1018127.p2	3.725	+	BC060514 TSC_hg19_v1_chr15_+_59063500 AK297291 AK075319 AB075509 BC140811 BC144616	-3557	+	TSC_hg19_v1_chr15_+_59063396 AL833610 NM_001040450 NM_001040453	-3672	+	TSC_hg19_v1_chr15_-_59041988 BC126253 BC143935 NM_001110	-25025	-	AK000867 TSC_hg19_v1_chr15_-_59225776 AK055195 BC108656 AK291423 AK131242	158703	-	TSC_hg19_v1_chr15_-_59225851 BC140851 NM_001013843 NM_024755	158752	-	TSC_hg19_v1_chr15_+_59279864 BC060862 BX538130 NM_017610	212778	+	BC060514|FAM63B|54629|family with sequence similarity 63, member B##AK297291|FAM63B|54629|family with sequence similarity 63, member B##AK075319|FAM63B|54629|family with sequence similarity 63, member B##AB075509|FAM63B|54629|family with sequence similarity 63, member B##BC140811|FAM63B|54629|family with sequence similarity 63, member B##BC144616|FAM63B|54629|family with sequence similarity 63, member B##AL833610|FAM63B|54629|family with sequence similarity 63, member B##NM_001040450|FAM63B|54629|family with sequence similarity 63, member B##NM_001040453|FAM63B|54629|family with sequence similarity 63, member B##BC126253|ADAM10|102|ADAM metallopeptidase domain 10##BC143935|ADAM10|102|ADAM metallopeptidase domain 10##NM_001110|ADAM10|102|ADAM metallopeptidase domain 10##AK000867|SLTM|79811|SAFB-like, transcription modulator##AK055195|SLTM|79811|SAFB-like, transcription modulator##BC108656|SLTM|79811|SAFB-like, transcription modulator##AK291423|SLTM|79811|SAFB-like, transcription modulator##AK131242|SLTM|79811|SAFB-like, transcription modulator##BC140851|SLTM|79811|SAFB-like, transcription modulator##NM_001013843|SLTM|79811|SAFB-like, transcription modulator##NM_024755|SLTM|79811|SAFB-like, transcription modulator##BC060862|RNF111|54778|ring finger protein 111##BX538130|RNF111|54778|ring finger protein 111##NM_017610|RNF111|54778|ring finger protein 111	0.0	0.0	
chr17	62097146	62097326	reg1000795.p1	3.725	+	NM_000873 TSC_hg19_v1_chr17_-_62084314	-12931	-	AK021786 AK294360 AK302960 AK304254 NM_001164257 NM_001191029 NM_001191030 NM_001191031 BC030709 BC045676	-21474	+	AY212253 M81758 NM_000334	-46998	-	TSC_hg19_v1_chr17_-_62097985 AK295382 AK309953 NM_001099786 NM_001099787 NM_001099788 NM_001099789	746	-	TSC_hg19_v1_chr17_-_62207401 AB385116 BC130405 BC130407	110162	-	AF059198 AB209869 TSC_hg19_v1_chr17_-_62207502 NM_001433 AK292403	110280	-	NM_000873|ICAM2|3384|intercellular adhesion molecule 2##AK021786|C17orf72|92340|chromosome 17 open reading frame 72##AK294360|C17orf72|92340|chromosome 17 open reading frame 72##AK302960|C17orf72|92340|chromosome 17 open reading frame 72##AK304254|C17orf72|92340|chromosome 17 open reading frame 72##NM_001164257|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191029|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191030|C17orf72|92340|chromosome 17 open reading frame 72##NM_001191031|C17orf72|92340|chromosome 17 open reading frame 72##BC030709|C17orf72|92340|chromosome 17 open reading frame 72##BC045676|C17orf72|92340|chromosome 17 open reading frame 72##AY212253|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##M81758|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##NM_000334|SCN4A|6329|sodium channel, voltage-gated, type IV, alpha subunit##AK295382|ICAM2|3384|intercellular adhesion molecule 2##NM_001099786|ICAM2|3384|intercellular adhesion molecule 2##NM_001099787|ICAM2|3384|intercellular adhesion molecule 2##NM_001099788|ICAM2|3384|intercellular adhesion molecule 2##NM_001099789|ICAM2|3384|intercellular adhesion molecule 2##BC130405|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##BC130407|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AF059198|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AB209869|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##NM_001433|ERN1|2081|endoplasmic reticulum to nucleus signaling 1##AK292403|ERN1|2081|endoplasmic reticulum to nucleus signaling 1	0.999628	0.0	
chr20	43119736	43119863	reg1017507.p1	3.725	+	TSC_hg19_v1_chr20_+_43104525 BC003071 NM_001039199 NM_024331 AK314045 CR936621	-15252	+	TSC_hg19_v1_chr20_+_43030005 AB463726 HQ692860 HQ692869 X76930 AB307703	-89777	+	BC137539 BC137540 TSC_hg19_v1_chr20_+_43029974	-89817	+	CU675237 DQ896714 DQ893392 AK300618 AF112227 BC006088 TSC_hg19_v1_chr20_-_43150672	30833	-	TSC_hg19_v1_chr20_-_43150683 AF153979 U49188 AK222923	30879	-	AK295120 AK309993 TSC_hg19_v1_chr20_-_43150704 NM_006811 NM_198941	30908	-	BC003071|TTPAL|79183|tocopherol (alpha) transfer protein-like##NM_001039199|TTPAL|79183|tocopherol (alpha) transfer protein-like##NM_024331|TTPAL|79183|tocopherol (alpha) transfer protein-like##AK314045|TTPAL|79183|tocopherol (alpha) transfer protein-like##CR936621|TTPAL|79183|tocopherol (alpha) transfer protein-like##HQ692860|HNF4A|3172|hepatocyte nuclear factor 4, alpha##HQ692869|HNF4A|3172|hepatocyte nuclear factor 4, alpha##X76930|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AB307703|HNF4A|3172|hepatocyte nuclear factor 4, alpha##BC137539|HNF4A|3172|hepatocyte nuclear factor 4, alpha##BC137540|HNF4A|3172|hepatocyte nuclear factor 4, alpha##DQ896714|SERINC3|10955|serine incorporator 3##DQ893392|SERINC3|10955|serine incorporator 3##AK300618|SERINC3|10955|serine incorporator 3##AF112227|SERINC3|10955|serine incorporator 3##BC006088|SERINC3|10955|serine incorporator 3##AF153979|SERINC3|10955|serine incorporator 3##U49188|SERINC3|10955|serine incorporator 3##AK222923|SERINC3|10955|serine incorporator 3##AK295120|SERINC3|10955|serine incorporator 3##AK309993|SERINC3|10955|serine incorporator 3##NM_006811|SERINC3|10955|serine incorporator 3##NM_198941|SERINC3|10955|serine incorporator 3	1.856019	0.0	denovo_WM_7:-52:0.438	denovo_WM_7:-53:0.332
chr22	50793225	50793398	reg1017165.p1	3.725	+	AB014585 TSC_hg19_v1_chr22_+_50781776 BC041698 AK302472	-11508	+	TSC_hg19_v1_chr22_+_50781755 NM_001242898 NM_001242899 NM_001242900 NM_014678 BC032664 BC006568 BC052995	-11568	+	AK054743 AK022407 BC031069 NM_001001794	-27865	-	BC046169 TSC_hg19_v1_chr22_-_50893787 BC056915	100455	-	EU831421 EU831514 BC111424 BC087612 TSC_hg19_v1_chr22_-_50913465 BC040031 AK057985 NM_002972	120077	-	TSC_hg19_v1_chr22_+_50919971 AK024788 AK225097 NM_024866 AB236970 NM_001253845 AK090635 AB463404 AB121034 AF529213	126812	+	AB014585|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC041698|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##AK302472|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242898|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242899|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_001242900|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##NM_014678|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC032664|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC006568|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##BC052995|PPP6R2|9701|protein phosphatase 6, regulatory subunit 2##AK054743|FAM116B|414918|family with sequence similarity 116, member B##BC031069|FAM116B|414918|family with sequence similarity 116, member B##NM_001001794|FAM116B|414918|family with sequence similarity 116, member B##BC046169|SBF1|6305|SET binding factor 1##BC056915|SBF1|6305|SET binding factor 1##EU831421|SBF1|6305|SET binding factor 1##EU831514|SBF1|6305|SET binding factor 1##BC087612|SBF1|6305|SET binding factor 1##BC040031|SBF1|6305|SET binding factor 1##AK057985|SBF1|6305|SET binding factor 1##NM_002972|SBF1|6305|SET binding factor 1##AK024788|ADM2|79924|adrenomedullin 2##NM_024866|ADM2|79924|adrenomedullin 2##AB236970|ADM2|79924|adrenomedullin 2##NM_001253845|ADM2|79924|adrenomedullin 2##AK090635|ADM2|79924|adrenomedullin 2##AB121034|ADM2|79924|adrenomedullin 2##AF529213|ADM2|79924|adrenomedullin 2	0.997734	0.0	denovo_WM_7:-3:0.238	denovo_WM_7:-4:0.238	denovo_WM_7:-5:0.238	denovo_WM_7:-6:0.238
chr7	83965455	83965635	reg1009171.p1	3.725	+	NM_006080 AK289954 TSC_hg19_v1_chr7_-_83824406	-141223	-	NM_012431	-687067	-	AK303925 NM_001178129	-694799	-	NM_152754	785701	-	AK309116 TSC_hg19_v1_chr7_-_84816296	850690	-	TSC_hg19_v1_chr7_+_86273224 BC041407 NM_000840	2307680	+	NM_006080|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##AK289954|SEMA3A|10371|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A##NM_012431|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##AK303925|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_001178129|SEMA3E|9723|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E##NM_152754|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##AK309116|SEMA3D|223117|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D##BC041407|GRM3|2913|glutamate receptor, metabotropic 3##NM_000840|GRM3|2913|glutamate receptor, metabotropic 3	0.0	0.0	
chr9	129600009	129600169	reg1014352.p1	3.725	+	TSC_hg19_v1_chr9_+_129567318 NM_001135776 NM_014007 AF049907 AK026123 BC008828	-32779	+	NM_001174146 NM_001174147 NM_002316 AB587444 BC112120 BC113491 BC143801 AF057135 BC069601 CU686928 HQ258228 BC069588	-223328	+	TSC_hg19_v1_chr9_+_129089122 NM_001011703 NM_033446 AK024432 BC028675 BC000122 CU688540	-510922	+	TSC_hg19_v1_chr9_+_129622936 AB082524 NM_001099270	22855	+	TSC_hg19_v1_chr9_+_129677073 AB002349 NM_001190729 NM_001190730 NM_014636 BC033708 BC019329 AK299149 BC032372	77015	+	AF221098 NM_001190728 AB385313 CU689706	124446	+	NM_001135776|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_014007|ZBTB43|23099|zinc finger and BTB domain containing 43##AF049907|ZBTB43|23099|zinc finger and BTB domain containing 43##AK026123|ZBTB43|23099|zinc finger and BTB domain containing 43##BC008828|ZBTB43|23099|zinc finger and BTB domain containing 43##NM_001174146|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001174147|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_002316|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC112120|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC113491|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC143801|LMX1B|4010|LIM homeobox transcription factor 1, beta##AF057135|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069601|LMX1B|4010|LIM homeobox transcription factor 1, beta##HQ258228|LMX1B|4010|LIM homeobox transcription factor 1, beta##BC069588|LMX1B|4010|LIM homeobox transcription factor 1, beta##NM_001011703|FAM125B|89853|family with sequence similarity 125, member B##NM_033446|FAM125B|89853|family with sequence similarity 125, member B##AK024432|FAM125B|89853|family with sequence similarity 125, member B##BC028675|FAM125B|89853|family with sequence similarity 125, member B##BC000122|FAM125B|89853|family with sequence similarity 125, member B##AB082524|ZBTB34|403341|zinc finger and BTB domain containing 34##NM_001099270|ZBTB34|403341|zinc finger and BTB domain containing 34##AB002349|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190729|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190730|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_014636|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC033708|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC019329|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AK299149|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##BC032372|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##AF221098|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1##NM_001190728|RALGPS1|9649|Ral GEF with PH domain and SH3 binding motif 1	1.028906	0.0	denovo_WM_7:36:0.425	denovo_WM_7:37:0.425
chr1	210520512	210520657	reg1017729.p1	3.724	+	NM_001170580 BC051191	-17943	+	TSC_hg19_v1_chr1_+_210502212 NM_001170587 NM_001170588 NM_018194 AK299200 AK001586 AK295130 AK298991 AK302955 AK316190 BC039071	-18319	+	NM_001122834 NM_001170564 AK297193	-18988	+	AF078741 AF078742 BC113709 BC143599 TSC_hg19_v1_chr1_-_211307437 AJ001366 NM_002238 NM_172362	786801	-	TSC_hg19_v1_chr1_+_211432710 NM_001136223 NM_001136224 NM_001136225	912124	+	TSC_hg19_v1_chr1_+_211432726 AK131312	912143	+	NM_001170580|HHAT|55733|hedgehog acyltransferase##BC051191|HHAT|55733|hedgehog acyltransferase##NM_001170587|HHAT|55733|hedgehog acyltransferase##NM_001170588|HHAT|55733|hedgehog acyltransferase##NM_018194|HHAT|55733|hedgehog acyltransferase##AK299200|HHAT|55733|hedgehog acyltransferase##AK001586|HHAT|55733|hedgehog acyltransferase##AK295130|HHAT|55733|hedgehog acyltransferase##AK298991|HHAT|55733|hedgehog acyltransferase##AK302955|HHAT|55733|hedgehog acyltransferase##AK316190|HHAT|55733|hedgehog acyltransferase##BC039071|HHAT|55733|hedgehog acyltransferase##NM_001122834|HHAT|55733|hedgehog acyltransferase##NM_001170564|HHAT|55733|hedgehog acyltransferase##AK297193|HHAT|55733|hedgehog acyltransferase##AF078741|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AF078742|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC113709|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##BC143599|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##AJ001366|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_002238|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_172362|KCNH1|3756|potassium voltage-gated channel, subfamily H (eag-related), member 1##NM_001136223|RCOR3|55758|REST corepressor 3##NM_001136224|RCOR3|55758|REST corepressor 3##NM_001136225|RCOR3|55758|REST corepressor 3##AK131312|RCOR3|55758|REST corepressor 3	0.0	0.0	
chr17	37999664	37999781	reg1016645.p1	3.724	+	AK290115 NM_001242443	-103503	+	AK125544 NM_001242442	-104699	+	AK294620 NM_001030002 BC006535 TSC_hg19_v1_chr17_+_37894600	-105143	+	BC032707 AF129512 AY377973 AY377975 AY377976 AY377977 AY377978 AY377979 AY377980 AY377981 AY377982 NM_012481 NM_183228 NM_183229 NM_183230 NM_183231 NM_183232	20708	-	AK292383 NM_198844 NM_199321 BC043152 AY251603 AY251604	24721	+	AF119884 NM_018530	74070	-	AK290115|GRB7|2886|growth factor receptor-bound protein 7##NM_001242443|GRB7|2886|growth factor receptor-bound protein 7##AK125544|GRB7|2886|growth factor receptor-bound protein 7##NM_001242442|GRB7|2886|growth factor receptor-bound protein 7##AK294620|GRB7|2886|growth factor receptor-bound protein 7##NM_001030002|GRB7|2886|growth factor receptor-bound protein 7##BC006535|GRB7|2886|growth factor receptor-bound protein 7##BC032707|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AF129512|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377973|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377975|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377976|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377977|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377978|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377979|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377980|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377981|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AY377982|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_012481|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183228|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183229|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183230|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183231|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##NM_183232|IKZF3|22806|IKAROS family zinc finger 3 (Aiolos)##AK292383|ZPBP2|124626|zona pellucida binding protein 2##NM_198844|ZPBP2|124626|zona pellucida binding protein 2##NM_199321|ZPBP2|124626|zona pellucida binding protein 2##BC043152|ZPBP2|124626|zona pellucida binding protein 2##AY251603|ZPBP2|124626|zona pellucida binding protein 2##AY251604|ZPBP2|124626|zona pellucida binding protein 2##AF119884|GSDMB|55876|gasdermin B##NM_018530|GSDMB|55876|gasdermin B	0.9868	0.0	denovo_WM_7:-22:0.808
chr17	809739	809845	reg1016391.p1	3.724	+	BC009327 AK302073 NM_001205319	-42474	-	BC011550 TSC_hg19_v1_chr17_+_685611 BC050614 AK225128 AB590841 CU679954 CU690740	-124178	+	AF177344 NM_018146 TSC_hg19_v1_chr17_+_685592 AK001443 AK222900	-124234	+	TSC_hg19_v1_chr17_-_882986 AB590045 NM_022463	73208	-	TSC_hg19_v1_chr17_+_900368 BC002324 NM_013337 AK000830 AK225453 AF155330	90563	+	TSC_hg19_v1_chr17_-_982210 AK299909	172433	-	BC009327|NXN|64359|nucleoredoxin##AK302073|NXN|64359|nucleoredoxin##NM_001205319|NXN|64359|nucleoredoxin##BC011550|RNMTL1|55178|RNA methyltransferase like 1##BC050614|RNMTL1|55178|RNA methyltransferase like 1##AK225128|RNMTL1|55178|RNA methyltransferase like 1##AF177344|RNMTL1|55178|RNA methyltransferase like 1##NM_018146|RNMTL1|55178|RNA methyltransferase like 1##AK001443|RNMTL1|55178|RNA methyltransferase like 1##AK222900|RNMTL1|55178|RNA methyltransferase like 1##NM_022463|NXN|64359|nucleoredoxin##BC002324|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##NM_013337|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK000830|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK225453|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AF155330|TIMM22|29928|translocase of inner mitochondrial membrane 22 homolog (yeast)##AK299909|ABR|29|active BCR-related gene	0.99871	0.0	denovo_WM_7:27:0.801
chr2	24437787	24437867	reg1011567.p1	3.724	+	BC050462 NM_001040710	-39856	+	TSC_hg19_v1_chr2_+_24346339 NM_001145710	-91468	+	TSC_hg19_v1_chr2_-_24346174 BC029523 NM_199346 BC043236 AK292601	-91583	-	TSC_hg19_v1_chr2_-_24583385 AB033082 BC146779 AF182198 AF182199 BC038963 NM_006277 NM_019595 NM_147152	145653	-	NM_003743 NM_147223 NM_147233 AJ000881 AJ000882 U59302	369550	+	TSC_hg19_v1_chr2_-_25016225 CU687260 BC073803 NM_001013663	578411	-	BC050462|C2orf84|653140|chromosome 2 open reading frame 84##NM_001040710|C2orf84|653140|chromosome 2 open reading frame 84##NM_001145710|LOC375190|375190|UPF0638 protein B##BC029523|PFN4|375189|profilin family, member 4##NM_199346|PFN4|375189|profilin family, member 4##BC043236|PFN4|375189|profilin family, member 4##AK292601|PFN4|375189|profilin family, member 4##AB033082|ITSN2|50618|intersectin 2##BC146779|ITSN2|50618|intersectin 2##AF182198|ITSN2|50618|intersectin 2##AF182199|ITSN2|50618|intersectin 2##BC038963|ITSN2|50618|intersectin 2##NM_006277|ITSN2|50618|intersectin 2##NM_019595|ITSN2|50618|intersectin 2##NM_147152|ITSN2|50618|intersectin 2##NM_003743|NCOA1|8648|nuclear receptor coactivator 1##NM_147223|NCOA1|8648|nuclear receptor coactivator 1##NM_147233|NCOA1|8648|nuclear receptor coactivator 1##AJ000881|NCOA1|8648|nuclear receptor coactivator 1##AJ000882|NCOA1|8648|nuclear receptor coactivator 1##U59302|NCOA1|8648|nuclear receptor coactivator 1##BC073803|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1##NM_001013663|PTRHD1|391356|peptidyl-tRNA hydrolase domain containing 1	0.015107	0.0	
chr8	66746926	66747027	reg1016597.p1	3.724	+	HQ258418 AK290801 BC058025 BC126360 NM_002603 U67932	-45725	-	NM_001145838 CU692168 BX537854 D13634	-164809	+	NM_001145839 NM_014637 TSC_hg19_v1_chr8_+_66556973 AK316202 BX647507 AK304716 BC036116 BC043498 AK298945	-190016	+	NM_001242318	6992	-	TSC_hg19_v1_chr8_-_66754300 AK292680	7316	-	NM_033105 BC016742 AF368276 AL133660	186843	+	HQ258418|PDE7A|5150|phosphodiesterase 7A##AK290801|PDE7A|5150|phosphodiesterase 7A##BC058025|PDE7A|5150|phosphodiesterase 7A##BC126360|PDE7A|5150|phosphodiesterase 7A##NM_002603|PDE7A|5150|phosphodiesterase 7A##U67932|PDE7A|5150|phosphodiesterase 7A##NM_001145838|MTFR1|9650|mitochondrial fission regulator 1##BX537854|MTFR1|9650|mitochondrial fission regulator 1##D13634|MTFR1|9650|mitochondrial fission regulator 1##NM_001145839|MTFR1|9650|mitochondrial fission regulator 1##NM_014637|MTFR1|9650|mitochondrial fission regulator 1##AK316202|MTFR1|9650|mitochondrial fission regulator 1##BX647507|MTFR1|9650|mitochondrial fission regulator 1##AK304716|MTFR1|9650|mitochondrial fission regulator 1##BC036116|MTFR1|9650|mitochondrial fission regulator 1##BC043498|MTFR1|9650|mitochondrial fission regulator 1##AK298945|MTFR1|9650|mitochondrial fission regulator 1##NM_001242318|PDE7A|5150|phosphodiesterase 7A##AK292680|PDE7A|5150|phosphodiesterase 7A##NM_033105|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##BC016742|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AF368276|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta##AL133660|DNAJC5B|85479|DnaJ (Hsp40) homolog, subfamily C, member 5 beta	0.0	0.954148	CTCF.p2:4:0.954
chr11	117009610	117009680	reg1003361.p2	3.723	+	BC128511 BC128510 NM_025164 BC121188 TSC_hg19_v1_chr11_-_116969081	-40612	-	X00566 TSC_hg19_v1_chr11_-_116708339 AX752114 AX752116 BC005380 NM_000039 AK292231 BC110286	-301290	-	TSC_hg19_v1_chr11_+_116700622 BC121081 BC134419 NM_000040 BC027977	-309021	+	TSC_hg19_v1_chr11_+_117015002 NM_001184746 NM_001184747 NM_001184748 NM_002572 AK292973 AK307366 BC000398 BC019301 BC039721 D63390 BC001774 DQ836738 DQ836739 DQ836740 DQ836741 DQ836742 DQ836743	5388	+	TSC_hg19_v1_chr11_+_117049458 AK292501	39912	+	TSC_hg19_v1_chr11_+_117049872 AF151799 BC114522 BC114959 AY358442 NM_001040455 AK292974	40247	+	BC128511|SIK3|23387|SIK family kinase 3##BC128510|SIK3|23387|SIK family kinase 3##NM_025164|SIK3|23387|SIK family kinase 3##BC121188|SIK3|23387|SIK family kinase 3##X00566|APOA1|335|apolipoprotein A-I##BC005380|APOA1|335|apolipoprotein A-I##NM_000039|APOA1|335|apolipoprotein A-I##AK292231|APOA1|335|apolipoprotein A-I##BC110286|APOA1|335|apolipoprotein A-I##BC121081|APOC3|345|apolipoprotein C-III##BC134419|APOC3|345|apolipoprotein C-III##NM_000040|APOC3|345|apolipoprotein C-III##BC027977|APOC3|345|apolipoprotein C-III##NM_001184746|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184747|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_001184748|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##NM_002572|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292973|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK307366|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC000398|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC019301|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC039721|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##D63390|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##BC001774|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836738|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836739|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836740|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836741|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836742|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##DQ836743|PAFAH1B2|5049|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)##AK292501|SIDT2|51092|SID1 transmembrane family, member 2##AF151799|SIDT2|51092|SID1 transmembrane family, member 2##BC114522|SIDT2|51092|SID1 transmembrane family, member 2##BC114959|SIDT2|51092|SID1 transmembrane family, member 2##AY358442|SIDT2|51092|SID1 transmembrane family, member 2##NM_001040455|SIDT2|51092|SID1 transmembrane family, member 2##AK292974|SIDT2|51092|SID1 transmembrane family, member 2	2.005329	0.0	denovo_WM_7:81:0.331	denovo_WM_7:82:0.331	denovo_WM_7:83:0.331
chr1	159723219	159723288	reg1013796.p1	3.723	+	M35163 BC125135 X56214 X56692 AK289443 AK313624 BC020766 BC070257 NM_000567	-38927	-	BC007039 BC007058 BC070178 NM_001639 X04608 TSC_hg19_v1_chr1_+_159557615 AB587585 BT006750 CR450313 CU675509 M10944	-165590	+	AB529280 NM_001004469 BC137025 BC137026	-217435	-	TSC_hg19_v1_chr1_+_159750758 AK000449 NM_017823 BC001140 AB164404 AF086553	27621	+	NM_001004310 AY212514 AY654627 AY654628 AY513661	48940	+	NM_020125 TSC_hg19_v1_chr1_+_159796486	73230	+	M35163|CRP|1401|C-reactive protein, pentraxin-related##BC125135|CRP|1401|C-reactive protein, pentraxin-related##X56214|CRP|1401|C-reactive protein, pentraxin-related##X56692|CRP|1401|C-reactive protein, pentraxin-related##AK289443|CRP|1401|C-reactive protein, pentraxin-related##AK313624|CRP|1401|C-reactive protein, pentraxin-related##BC020766|CRP|1401|C-reactive protein, pentraxin-related##BC070257|CRP|1401|C-reactive protein, pentraxin-related##NM_000567|CRP|1401|C-reactive protein, pentraxin-related##BC007039|APCS|325|amyloid P component, serum##BC007058|APCS|325|amyloid P component, serum##BC070178|APCS|325|amyloid P component, serum##NM_001639|APCS|325|amyloid P component, serum##X04608|APCS|325|amyloid P component, serum##BT006750|APCS|325|amyloid P component, serum##CR450313|APCS|325|amyloid P component, serum##M10944|APCS|325|amyloid P component, serum##NM_001004469|OR10J5|127385|olfactory receptor, family 10, subfamily J, member 5##BC137025|OR10J5|127385|olfactory receptor, family 10, subfamily J, member 5##BC137026|OR10J5|127385|olfactory receptor, family 10, subfamily J, member 5##AK000449|DUSP23|54935|dual specificity phosphatase 23##NM_017823|DUSP23|54935|dual specificity phosphatase 23##BC001140|DUSP23|54935|dual specificity phosphatase 23##AB164404|DUSP23|54935|dual specificity phosphatase 23##AF086553|DUSP23|54935|dual specificity phosphatase 23##NM_001004310|FCRL6|343413|Fc receptor-like 6##AY212514|FCRL6|343413|Fc receptor-like 6##AY654627|FCRL6|343413|Fc receptor-like 6##AY654628|FCRL6|343413|Fc receptor-like 6##AY513661|FCRL6|343413|Fc receptor-like 6##NM_020125|SLAMF8|56833|SLAM family member 8	0.0	0.0	
chr16	10456487	10456607	reg1014716.p2	3.723	+	NM_000833 U90277 TSC_hg19_v1_chr16_-_10276744	-179870	-	AK308862 TSC_hg19_v1_chr16_-_10276243 AB209695 NM_001134407	-180359	-	BC143273 U09002 NM_001134408	-180714	-	AK093414 AX748112 TSC_hg19_v1_chr16_+_10479917 AK296565 AK299040 BC033891 BC041882	23370	+	NM_024997 BC137079 BC144468	66193	+	TSC_hg19_v1_chr16_-_10674469 AK123602 BC009687 AK313134 NM_001424	217943	-	NM_000833|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U90277|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK308862|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AB209695|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134407|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##BC143273|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##U09002|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##NM_001134408|GRIN2A|2903|glutamate receptor, ionotropic, N-methyl D-aspartate 2A##AK093414|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK296565|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK299040|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC033891|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##NM_024997|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC137079|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##BC144468|ATF7IP2|80063|activating transcription factor 7 interacting protein 2##AK123602|EMP2|2013|epithelial membrane protein 2##BC009687|EMP2|2013|epithelial membrane protein 2##AK313134|EMP2|2013|epithelial membrane protein 2##NM_001424|EMP2|2013|epithelial membrane protein 2	2.077596	0.0	denovo_WM_7:20:0.656	denovo_WM_7:55:0.940
chr17	655529	655624	reg1017312.p2	3.723	+	TSC_hg19_v1_chr17_-_655502 NM_015721	-91	-	TSC_hg19_v1_chr17_-_655412 AB463052 AF173856 BC036024 AK302722 BC032084 BC020062	-156	-	TSC_hg19_v1_chr17_+_635806 AF477201 BC026023 AK025935 AK292065 NM_024792 CU693104 AK125146	-19790	+	TSC_hg19_v1_chr17_-_685521 AK226083 AK292315 BC008605 CU677471 AK296584 AF061730 AF177342 AK301751 BC010902 BC015848 AK001488 AF177343 NM_016080	29904	-	AF177344 NM_018146 TSC_hg19_v1_chr17_+_685592 AK001443 AK222900	29982	+	BC011550 TSC_hg19_v1_chr17_+_685611 BC050614 AK225128 AB590841 CU679954 CU690740	30038	+	NM_015721|GEMIN4|50628|gem (nuclear organelle) associated protein 4##AF173856|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC036024|GEMIN4|50628|gem (nuclear organelle) associated protein 4##AK302722|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC032084|GEMIN4|50628|gem (nuclear organelle) associated protein 4##BC020062|GEMIN4|50628|gem (nuclear organelle) associated protein 4##AF477201|FAM57A|79850|family with sequence similarity 57, member A##BC026023|FAM57A|79850|family with sequence similarity 57, member A##AK025935|FAM57A|79850|family with sequence similarity 57, member A##AK292065|FAM57A|79850|family with sequence similarity 57, member A##NM_024792|FAM57A|79850|family with sequence similarity 57, member A##AK125146|FAM57A|79850|family with sequence similarity 57, member A##AK226083|GLOD4|51031|glyoxalase domain containing 4##AK292315|GLOD4|51031|glyoxalase domain containing 4##BC008605|GLOD4|51031|glyoxalase domain containing 4##AK296584|GLOD4|51031|glyoxalase domain containing 4##AF061730|GLOD4|51031|glyoxalase domain containing 4##AF177342|GLOD4|51031|glyoxalase domain containing 4##AK301751|GLOD4|51031|glyoxalase domain containing 4##BC010902|GLOD4|51031|glyoxalase domain containing 4##BC015848|GLOD4|51031|glyoxalase domain containing 4##AK001488|GLOD4|51031|glyoxalase domain containing 4##AF177343|GLOD4|51031|glyoxalase domain containing 4##NM_016080|GLOD4|51031|glyoxalase domain containing 4##AF177344|RNMTL1|55178|RNA methyltransferase like 1##NM_018146|RNMTL1|55178|RNA methyltransferase like 1##AK001443|RNMTL1|55178|RNA methyltransferase like 1##AK222900|RNMTL1|55178|RNA methyltransferase like 1##BC011550|RNMTL1|55178|RNA methyltransferase like 1##BC050614|RNMTL1|55178|RNA methyltransferase like 1##AK225128|RNMTL1|55178|RNA methyltransferase like 1	0.0	0.044281	
chr20	13752664	13752844	reg1013864.p2	3.723	+	TSC_hg19_v1_chr20_-_13619576 BC025266 AK316311 AK299940 AK304488 NM_017714	-133190	-	NM_080826 TSC_hg19_v1_chr20_+_13202422	-550331	+	TSC_hg19_v1_chr20_+_12989619 BC005205 NM_018327 BC150644	-763113	+	TSC_hg19_v1_chr20_-_13765553 AK000375 NM_016649 BC104663 AK022369 BC062214	12787	-	TSC_hg19_v1_chr20_+_13765698 NM_001039375 NM_024120 AK289781 AK091060 AX746757 BC073158 CU687252 BC005984	12999	+	BC035741 AK302170 NM_025229	218504	-	BC025266|TASP1|55617|taspase, threonine aspartase, 1##AK316311|TASP1|55617|taspase, threonine aspartase, 1##AK299940|TASP1|55617|taspase, threonine aspartase, 1##AK304488|TASP1|55617|taspase, threonine aspartase, 1##NM_017714|TASP1|55617|taspase, threonine aspartase, 1##NM_080826|ISM1|140862|isthmin 1 homolog (zebrafish)##BC005205|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##NM_018327|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##BC150644|SPTLC3|55304|serine palmitoyltransferase, long chain base subunit 3##AK000375|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_016649|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC104663|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##AK022369|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##BC062214|ESF1|51575|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)##NM_001039375|C20orf7|79133|chromosome 20 open reading frame 7##NM_024120|C20orf7|79133|chromosome 20 open reading frame 7##AK289781|C20orf7|79133|chromosome 20 open reading frame 7##AK091060|C20orf7|79133|chromosome 20 open reading frame 7##BC073158|C20orf7|79133|chromosome 20 open reading frame 7##BC005984|C20orf7|79133|chromosome 20 open reading frame 7##BC035741|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##AK302170|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)##NM_025229|SEL1L2|80343|sel-1 suppressor of lin-12-like 2 (C. elegans)	0.974777	0.903737	CTCF.p2:-61:0.904	denovo_WM_7:94:0.849
chr6	41435176	41435288	reg1013166.p1	3.723	+	NM_001199509 NM_001199510 NM_004828 AJ010099 AJ010100 BC166647	-131666	+	CU676054 DQ892009 DQ895198 AY074783 TSC_hg19_v1_chr6_-_41254418 AK223264 AK292162 AK301519 AK313104 BC017773 AF287008 NM_001242589 NM_001242590 NM_018643	-180808	-	AY358271 NM_198153 BC101780 BC105101 BC143652	-239164	+	TSC_hg19_v1_chr6_+_41514135 BC040962 NM_001012426 NM_001012427 NM_138457	78927	+	TSC_hg19_v1_chr6_+_41514342 BC052803	79105	+	TSC_hg19_v1_chr6_+_41606198 NM_005586 AK290735 BC007836 U78313	170990	+	NM_001199509|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_001199510|NCR2|9436|natural cytotoxicity triggering receptor 2##NM_004828|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010099|NCR2|9436|natural cytotoxicity triggering receptor 2##AJ010100|NCR2|9436|natural cytotoxicity triggering receptor 2##BC166647|NCR2|9436|natural cytotoxicity triggering receptor 2##DQ892009|TREM1|54210|triggering receptor expressed on myeloid cells 1##DQ895198|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY074783|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK223264|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK292162|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK301519|TREM1|54210|triggering receptor expressed on myeloid cells 1##AK313104|TREM1|54210|triggering receptor expressed on myeloid cells 1##BC017773|TREM1|54210|triggering receptor expressed on myeloid cells 1##AF287008|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242589|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_001242590|TREM1|54210|triggering receptor expressed on myeloid cells 1##NM_018643|TREM1|54210|triggering receptor expressed on myeloid cells 1##AY358271|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##NM_198153|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC101780|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC105101|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC143652|TREML4|285852|triggering receptor expressed on myeloid cells-like 4##BC040962|FOXP4|116113|forkhead box P4##NM_001012426|FOXP4|116113|forkhead box P4##NM_001012427|FOXP4|116113|forkhead box P4##NM_138457|FOXP4|116113|forkhead box P4##BC052803|FOXP4|116113|forkhead box P4##NM_005586|MDFI|4188|MyoD family inhibitor##AK290735|MDFI|4188|MyoD family inhibitor##BC007836|MDFI|4188|MyoD family inhibitor##U78313|MDFI|4188|MyoD family inhibitor	1.009787	0.0	
chr8	21932689	21932774	reg1012911.p1	3.723	+	TSC_hg19_v1_chr8_+_21924371 CU675345 DQ892779 DQ896026 EU832675 EU832755 BT007396	-8354	+	AK055842 TSC_hg19_v1_chr8_+_21916865	-15866	+	NM_001114138 NM_001978 TSC_hg19_v1_chr8_+_21916727 L19713 U28389	-16022	+	TSC_hg19_v1_chr8_+_21946666 AK126408 NM_022749 BC052237	13947	+	TSC_hg19_v1_chr8_+_21946730 AK294646	14016	+	CU677759 AK026147 TSC_hg19_v1_chr8_-_21966936 BC016902 NM_024815	34157	-	DQ892779|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##DQ896026|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##EU832675|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##EU832755|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##BT007396|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##AK055842|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##NM_001114138|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##NM_001978|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##L19713|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##U28389|EPB49|2039|erythrocyte membrane protein band 4.9 (dematin)##AK126408|FAM160B2|64760|family with sequence similarity 160, member B2##NM_022749|FAM160B2|64760|family with sequence similarity 160, member B2##BC052237|FAM160B2|64760|family with sequence similarity 160, member B2##AK294646|FAM160B2|64760|family with sequence similarity 160, member B2##AK026147|NUDT18|79873|nudix (nucleoside diphosphate linked moiety X)-type motif 18##BC016902|NUDT18|79873|nudix (nucleoside diphosphate linked moiety X)-type motif 18##NM_024815|NUDT18|79873|nudix (nucleoside diphosphate linked moiety X)-type motif 18	0.957256	0.0	denovo_WM_7:-25:0.645
chrX	11811045	11811167	reg1016628.p2	3.723	+	NM_006800 AK025642	-33359	+	NM_001193270 AK300814	-34389	+	AF117065 NM_078628 NM_078629 BC031210 BC010925 AK289780 BC017267 AB463853 DQ891661 DQ894848 AK294255	-34763	+	AB002314 NM_014728 AK289694	345484	+	NM_001039091 NM_002765 AK313246 TSC_hg19_v1_chrX_+_12809516	998391	+	TSC_hg19_v1_chrX_+_12809530 BC040483 BC030019 BC110875 BC119662 BC119663 Y00971 CU691884	998462	+	NM_006800|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK025642|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_001193270|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK300814|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AF117065|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078628|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##NM_078629|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC031210|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC010925|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK289780|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##BC017267|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ891661|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##DQ894848|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AK294255|MSL3|10943|male-specific lethal 3 homolog (Drosophila)##AB002314|FRMPD4|9758|FERM and PDZ domain containing 4##NM_014728|FRMPD4|9758|FERM and PDZ domain containing 4##AK289694|FRMPD4|9758|FERM and PDZ domain containing 4##NM_001039091|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##NM_002765|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##AK313246|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC040483|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC030019|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC110875|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119662|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##BC119663|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2##Y00971|PRPS2|5634|phosphoribosyl pyrophosphate synthetase 2	0.0	0.0	
chr10	31996939	31997119	reg1001199.p2	3.722	+	AK311557 NM_001128128 NM_001174094 AK311187 AK311201	-386940	+	TSC_hg19_v1_chr10_+_31608113 NM_001174093 NM_001174095 NM_001174096 NM_030751 AK091478 AK299541 AK307510 AX747011 AK310924 AK311137 AK314683 U12170 AK308822 AL831979 BC009572 BC065705 BC112392 BC107781 AK300830 D15050 AB384934	-388896	+	AK296146 BC042008 TSC_hg19_v1_chr10_-_31607991	-389072	-	TSC_hg19_v1_chr10_-_32217729 AK315066 BC115362 BC115363 BC094719 CR936681 AK091182 AX746833 AK127611	220695	-	TSC_hg19_v1_chr10_-_32217770 AY033594 AY033595 NM_018287	220756	-	TSC_hg19_v1_chr10_-_32344938 AB462413	347903	-	AK311557|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001128128|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174094|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311187|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311201|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174093|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174095|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_001174096|ZEB1|6935|zinc finger E-box binding homeobox 1##NM_030751|ZEB1|6935|zinc finger E-box binding homeobox 1##AK091478|ZEB1|6935|zinc finger E-box binding homeobox 1##AK299541|ZEB1|6935|zinc finger E-box binding homeobox 1##AK307510|ZEB1|6935|zinc finger E-box binding homeobox 1##AK310924|ZEB1|6935|zinc finger E-box binding homeobox 1##AK311137|ZEB1|6935|zinc finger E-box binding homeobox 1##AK314683|ZEB1|6935|zinc finger E-box binding homeobox 1##U12170|ZEB1|6935|zinc finger E-box binding homeobox 1##AK308822|ZEB1|6935|zinc finger E-box binding homeobox 1##AL831979|ZEB1|6935|zinc finger E-box binding homeobox 1##BC009572|ZEB1|6935|zinc finger E-box binding homeobox 1##BC065705|ZEB1|6935|zinc finger E-box binding homeobox 1##BC112392|ZEB1|6935|zinc finger E-box binding homeobox 1##BC107781|ZEB1|6935|zinc finger E-box binding homeobox 1##AK300830|ZEB1|6935|zinc finger E-box binding homeobox 1##AK296146|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##BC042008|ZEB1-AS1|220930|ZEB1 antisense RNA 1 (non-protein coding)##AK315066|ARHGAP12|94134|Rho GTPase activating protein 12##BC115362|ARHGAP12|94134|Rho GTPase activating protein 12##BC115363|ARHGAP12|94134|Rho GTPase activating protein 12##BC094719|ARHGAP12|94134|Rho GTPase activating protein 12##CR936681|ARHGAP12|94134|Rho GTPase activating protein 12##AK091182|ARHGAP12|94134|Rho GTPase activating protein 12##AK127611|ARHGAP12|94134|Rho GTPase activating protein 12##AY033594|ARHGAP12|94134|Rho GTPase activating protein 12##AY033595|ARHGAP12|94134|Rho GTPase activating protein 12##NM_018287|ARHGAP12|94134|Rho GTPase activating protein 12	0.37099	0.0	denovo_WM_7:5:0.277
chr13	52281904	52282084	reg1012561.p2	3.722	+	TSC_hg19_v1_chr13_+_52158648 AF411978 CU680736	-123259	+	TSC_hg19_v1_chr13_+_52158639 BC014004	-123353	+	AK309815 TSC_hg19_v1_chr13_+_52158630	-123361	+	BC026024 BC009825 NM_001031719 TSC_hg19_v1_chr13_-_52378300 AK023701 NM_024705	96281	-	AK098719 NM_031290 AK225745 AL136887 BC069691 BC069748 BC069770 BC069806	154200	+	DQ015922 U03464 BC143974 BC143973 BC117200 BC143975 BC143976 NM_000053 NM_001005918 NM_001243182 U11700	303556	-	AF411978|WDFY2|115825|WD repeat and FYVE domain containing 2##BC014004|WDFY2|115825|WD repeat and FYVE domain containing 2##AK309815|WDFY2|115825|WD repeat and FYVE domain containing 2##BC026024|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##BC009825|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_001031719|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK023701|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##NM_024705|DHRS12|79758|dehydrogenase/reductase (SDR family) member 12##AK098719|CCDC70|83446|coiled-coil domain containing 70##NM_031290|CCDC70|83446|coiled-coil domain containing 70##AK225745|CCDC70|83446|coiled-coil domain containing 70##AL136887|CCDC70|83446|coiled-coil domain containing 70##BC069691|CCDC70|83446|coiled-coil domain containing 70##BC069748|CCDC70|83446|coiled-coil domain containing 70##BC069770|CCDC70|83446|coiled-coil domain containing 70##BC069806|CCDC70|83446|coiled-coil domain containing 70##DQ015922|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U03464|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143974|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143973|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC117200|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143975|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##BC143976|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_000053|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001005918|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##NM_001243182|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide##U11700|ATP7B|540|ATPase, Cu++ transporting, beta polypeptide	1.997318	0.0	denovo_WM_7:89:0.444	denovo_WM_7:90:0.296	denovo_WM_7:105:0.324	denovo_WM_7:106:0.472
chr16	71760549	71760670	reg1013348.p1	3.722	+	TSC_hg19_v1_chr16_-_71757789 AK124678	-2845	-	AB463166 AM393067 AM393542 BC129927 BC129983 NM_015020	-11909	-	BC005052 NM_001017967 NM_052858 AK307585 BC011893 BC013376 AK056842 AK292185 CU680584	-100512	+	AL110198 TSC_hg19_v1_chr16_-_71782208	21580	-	TSC_hg19_v1_chr16_-_71842690 AB015317 Y12226	82025	-	TSC_hg19_v1_chr16_-_71842738 AK293233 AK225906 AK294546 AK299630	82144	-	AK124678|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393067|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##AM393542|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129927|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC129983|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##NM_015020|PHLPP2|23035|PH domain and leucine rich repeat protein phosphatase 2##BC005052|MARVELD3|91862|MARVEL domain containing 3##NM_001017967|MARVELD3|91862|MARVEL domain containing 3##NM_052858|MARVELD3|91862|MARVEL domain containing 3##AK307585|MARVELD3|91862|MARVEL domain containing 3##BC011893|MARVELD3|91862|MARVEL domain containing 3##BC013376|MARVELD3|91862|MARVEL domain containing 3##AK056842|MARVELD3|91862|MARVEL domain containing 3##AK292185|MARVELD3|91862|MARVEL domain containing 3##AL110198|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AB015317|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##Y12226|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK293233|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK225906|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK294546|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit##AK299630|AP1G1|164|adaptor-related protein complex 1, gamma 1 subunit	0.635499	0.0	denovo_WM_7:-14:0.297
chr3	171353599	171353733	reg1012385.p1	3.722	+	AF172264 AF172265 AF172266 AF172267 AF172268 AF172269 AF172270 AF172271 AB384494 TSC_hg19_v1_chr3_-_171178208 AB011123 BC150256 BC018093 AK291056 NM_001161560 NM_001161561 NM_001161562 NM_001161563 NM_001161564 NM_001161565 NM_001161566 NM_015028	-175595	-	NM_000340	-608899	-	TSC_hg19_v1_chr3_-_170744533 AK298418	-609133	-	AB209907 TSC_hg19_v1_chr3_-_171528238 BC068976 U38545 NM_001130081 NM_002662	174589	-	NM_001164436 AK026825	207482	+	TSC_hg19_v1_chr3_+_171757413 BC012204 NM_022763	403749	+	AF172264|TNIK|23043|TRAF2 and NCK interacting kinase##AF172265|TNIK|23043|TRAF2 and NCK interacting kinase##AF172266|TNIK|23043|TRAF2 and NCK interacting kinase##AF172267|TNIK|23043|TRAF2 and NCK interacting kinase##AF172268|TNIK|23043|TRAF2 and NCK interacting kinase##AF172269|TNIK|23043|TRAF2 and NCK interacting kinase##AF172270|TNIK|23043|TRAF2 and NCK interacting kinase##AF172271|TNIK|23043|TRAF2 and NCK interacting kinase##AB011123|TNIK|23043|TRAF2 and NCK interacting kinase##BC150256|TNIK|23043|TRAF2 and NCK interacting kinase##BC018093|TNIK|23043|TRAF2 and NCK interacting kinase##AK291056|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161560|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161561|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161562|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161563|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161564|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161565|TNIK|23043|TRAF2 and NCK interacting kinase##NM_001161566|TNIK|23043|TRAF2 and NCK interacting kinase##NM_015028|TNIK|23043|TRAF2 and NCK interacting kinase##NM_000340|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AK298418|SLC2A2|6514|solute carrier family 2 (facilitated glucose transporter), member 2##AB209907|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##BC068976|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##U38545|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001130081|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_002662|PLD1|5337|phospholipase D1, phosphatidylcholine-specific##NM_001164436|TMEM212|389177|transmembrane protein 212##AK026825|TMEM212|389177|transmembrane protein 212##BC012204|FNDC3B|64778|fibronectin type III domain containing 3B##NM_022763|FNDC3B|64778|fibronectin type III domain containing 3B	0.997325	0.0	denovo_WM_7:97:0.432	denovo_WM_7:98:0.288
chr5	107009510	107009614	reg1012672.p2	3.722	+	AK308672 NM_001962 U26403	-2972	-	TSC_hg19_v1_chr5_-_102898491 AL136592 AK098066 BC041099 AK304010 NM_031438 AK309942 BC042967	-4111081	-	TSC_hg19_v1_chr5_+_102594465 BC009203 NM_033211 AK058020 AF038182	-4415105	+	TSC_hg19_v1_chr5_-_107717106 AK126722	707568	-	BC063316 NM_001163315	708236	-	BC011940 TSC_hg19_v1_chr5_-_108063984 AB593118 AK126449	1054418	-	AK308672|EFNA5|1946|ephrin-A5##NM_001962|EFNA5|1946|ephrin-A5##U26403|EFNA5|1946|ephrin-A5##AL136592|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK098066|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC041099|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK304010|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##NM_031438|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##AK309942|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC042967|NUDT12|83594|nudix (nucleoside diphosphate linked moiety X)-type motif 12##BC009203|C5orf30|90355|chromosome 5 open reading frame 30##NM_033211|C5orf30|90355|chromosome 5 open reading frame 30##AK058020|C5orf30|90355|chromosome 5 open reading frame 30##AF038182|C5orf30|90355|chromosome 5 open reading frame 30##AK126722|FBXL17|64839|F-box and leucine-rich repeat protein 17##BC063316|FBXL17|64839|F-box and leucine-rich repeat protein 17##NM_001163315|FBXL17|64839|F-box and leucine-rich repeat protein 17##AB593118|HP07349|100652853|uncharacterized protein HP07349	0.0	0.010083	
chr10	43950320	43950449	reg1016553.p1	3.721	+	AK302442 TSC_hg19_v1_chr10_+_43932667	-17764	+	TSC_hg19_v1_chr10_-_43904631 BC015580 BC004254 AK296696 NM_004966 NM_001098204	-45738	-	TSC_hg19_v1_chr10_-_43904306 AK001364 NM_001098205	-46066	-	NM_005674 X82125	113522	-	BC026030 X82128 AK292013 NM_001099282 NM_001099283 NM_001099284	119652	-	AK074679 AK299707 NM_145312 TSC_hg19_v1_chr10_+_44101877 BC014161	151482	+	AK302442|ZNF487P|642819|zinc finger protein 487, pseudogene##BC015580|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##BC004254|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK296696|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_004966|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098204|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##AK001364|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_001098205|HNRNPF|3185|heterogeneous nuclear ribonucleoprotein F##NM_005674|ZNF239|8187|zinc finger protein 239##X82125|ZNF239|8187|zinc finger protein 239##BC026030|ZNF239|8187|zinc finger protein 239##X82128|ZNF239|8187|zinc finger protein 239##AK292013|ZNF239|8187|zinc finger protein 239##NM_001099282|ZNF239|8187|zinc finger protein 239##NM_001099283|ZNF239|8187|zinc finger protein 239##NM_001099284|ZNF239|8187|zinc finger protein 239##AK074679|ZNF485|220992|zinc finger protein 485##AK299707|ZNF485|220992|zinc finger protein 485##NM_145312|ZNF485|220992|zinc finger protein 485##BC014161|ZNF485|220992|zinc finger protein 485	1.997907	0.0	denovo_WM_7:83:0.457	denovo_WM_7:84:0.457
chr12	32292738	32292865	reg1018310.p2	3.721	+	AK313430 AK290188 NM_001003398 NM_001714 U90028 BC136372 TSC_hg19_v1_chr12_+_32260263	-32628	+	TSC_hg19_v1_chr12_+_32259750 BC010091	-33087	+	TSC_hg19_v1_chr12_+_32112382 AK092399 AX747522 BC140819	-180407	+	BC039708 BC063403 NM_139241 BC096746 AK057294 BC045552	362238	+	TSC_hg19_v1_chr12_+_32687260 AK303334	394462	+	TSC_hg19_v1_chr12_+_32832187 AK302565 NM_005690 NM_012062 NM_012063 AK311606	539356	+	AK313430|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK290188|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001003398|BICD1|636|bicaudal D homolog 1 (Drosophila)##NM_001714|BICD1|636|bicaudal D homolog 1 (Drosophila)##U90028|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC136372|BICD1|636|bicaudal D homolog 1 (Drosophila)##BC010091|BICD1|636|bicaudal D homolog 1 (Drosophila)##AK092399|C12orf35|55196|chromosome 12 open reading frame 35##BC140819|C12orf35|55196|chromosome 12 open reading frame 35##BC039708|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC063403|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##NM_139241|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC096746|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK057294|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##BC045552|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK303334|FGD4|121512|FYVE, RhoGEF and PH domain containing 4##AK302565|DNM1L|10059|dynamin 1-like##NM_005690|DNM1L|10059|dynamin 1-like##NM_012062|DNM1L|10059|dynamin 1-like##NM_012063|DNM1L|10059|dynamin 1-like##AK311606|DNM1L|10059|dynamin 1-like	0.036397	0.0	
chr12	40511774	40511928	reg1014987.p2	3.721	+	TSC_hg19_v1_chr12_-_40499870 BC047507	-11979	-	BC117117 BC117119 AJ315644 NM_052885 TSC_hg19_v1_chr12_-_40499763	-12162	-	BC038754 NM_001031748 BC048120 AK097445	-491856	+	TSC_hg19_v1_chr12_+_40618798 NM_198578 BC117180 AY792511	107008	+	TSC_hg19_v1_chr12_+_41086262 DQ442054 AK289698 Z21488 NM_001843 NM_175038	574431	+	TSC_hg19_v1_chr12_+_41582170 NM_001164595	1070357	+	BC047507|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117117|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC117119|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##AJ315644|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##NM_052885|SLC2A13|114134|solute carrier family 2 (facilitated glucose transporter), member 13##BC038754|C12orf40|283461|chromosome 12 open reading frame 40##NM_001031748|C12orf40|283461|chromosome 12 open reading frame 40##BC048120|C12orf40|283461|chromosome 12 open reading frame 40##AK097445|C12orf40|283461|chromosome 12 open reading frame 40##NM_198578|LRRK2|120892|leucine-rich repeat kinase 2##BC117180|LRRK2|120892|leucine-rich repeat kinase 2##AY792511|LRRK2|120892|leucine-rich repeat kinase 2##AK289698|CNTN1|1272|contactin 1##Z21488|CNTN1|1272|contactin 1##NM_001843|CNTN1|1272|contactin 1##NM_175038|CNTN1|1272|contactin 1##NM_001164595|PDZRN4|29951|PDZ domain containing ring finger 4	0.979031	0.0	denovo_WM_7:-82:0.508	denovo_WM_7:-83:0.453
chr1	25099967	25100077	reg1017733.p1	3.721	+	TSC_hg19_v1_chr1_+_25071976 AF109196 AB463494 AM393644 CU680328 CR533501	-28017	+	TSC_hg19_v1_chr1_+_25071937 AK315051 AK301466 AK307142	-28089	+	NM_013943 TSC_hg19_v1_chr1_+_25071875 AL117424 AK001624 AK095959 BC012444 AF097330	-28191	+	X79550 Z35278 TSC_hg19_v1_chr1_-_25256459	156403	-	TSC_hg19_v1_chr1_-_25256761 AK301044	156717	-	TSC_hg19_v1_chr1_-_25256768 AJ001432 NM_004350	156764	-	AF109196|CLIC4|25932|chloride intracellular channel 4##AM393644|CLIC4|25932|chloride intracellular channel 4##CR533501|CLIC4|25932|chloride intracellular channel 4##AK315051|CLIC4|25932|chloride intracellular channel 4##AK301466|CLIC4|25932|chloride intracellular channel 4##AK307142|CLIC4|25932|chloride intracellular channel 4##NM_013943|CLIC4|25932|chloride intracellular channel 4##AL117424|CLIC4|25932|chloride intracellular channel 4##AK001624|CLIC4|25932|chloride intracellular channel 4##AK095959|CLIC4|25932|chloride intracellular channel 4##BC012444|CLIC4|25932|chloride intracellular channel 4##AF097330|CLIC4|25932|chloride intracellular channel 4##X79550|RUNX3|864|runt-related transcription factor 3##Z35278|RUNX3|864|runt-related transcription factor 3##AK301044|RUNX3|864|runt-related transcription factor 3##AJ001432|RUNX3|864|runt-related transcription factor 3##NM_004350|RUNX3|864|runt-related transcription factor 3	0.99913	0.0	
chr15	40049114	40049206	reg1009579.p1	3.721	+	TSC_hg19_v1_chr15_+_39873279 AK304754 AK291639 NM_003246 AB209912 BC136469 BC136470 M14326 X14787 M25631 X04665	-175831	+	BX647708 NM_207445 AK096850 BC137300 BC137301 BC171789	-506235	+	AK093014 AX747856 BC119016 BC119810 NM_207444	-1060362	+	AK093308 AX748045 BC045191 NM_152597	25868	-	AK091251 TSC_hg19_v1_chr15_+_40075106	25946	+	CU688250 TSC_hg19_v1_chr15_-_40212342	163125	-	AK304754|THBS1|7057|thrombospondin 1##AK291639|THBS1|7057|thrombospondin 1##NM_003246|THBS1|7057|thrombospondin 1##AB209912|THBS1|7057|thrombospondin 1##BC136469|THBS1|7057|thrombospondin 1##BC136470|THBS1|7057|thrombospondin 1##M14326|THBS1|7057|thrombospondin 1##X14787|THBS1|7057|thrombospondin 1##M25631|THBS1|7057|thrombospondin 1##X04665|THBS1|7057|thrombospondin 1##BX647708|C15orf54|400360|chromosome 15 open reading frame 54##NM_207445|C15orf54|400360|chromosome 15 open reading frame 54##AK096850|C15orf54|400360|chromosome 15 open reading frame 54##BC137300|C15orf54|400360|chromosome 15 open reading frame 54##BC137301|C15orf54|400360|chromosome 15 open reading frame 54##BC171789|C15orf54|400360|chromosome 15 open reading frame 54##AK093014|C15orf53|400359|chromosome 15 open reading frame 53##BC119016|C15orf53|400359|chromosome 15 open reading frame 53##BC119810|C15orf53|400359|chromosome 15 open reading frame 53##NM_207444|C15orf53|400359|chromosome 15 open reading frame 53##AK093308|FSIP1|161835|fibrous sheath interacting protein 1##BC045191|FSIP1|161835|fibrous sheath interacting protein 1##NM_152597|FSIP1|161835|fibrous sheath interacting protein 1	0.0	0.0	
chr15	75417649	75417780	reg1013208.p1	3.721	+	TSC_hg19_v1_chr15_+_75315949 AK027491 AY358848	-101733	+	NM_021823 TSC_hg19_v1_chr15_+_75315930	-101786	+	TSC_hg19_v1_chr15_+_75287924 AK126940 NM_001178111 NM_001178112 NM_138967 AK056438 AL834226 AK301505 AF495715 AK127480 CR936761	-129807	+	AK128205 TSC_hg19_v1_chr15_+_75491259	73532	+	TSC_hg19_v1_chr15_+_75494220 NM_015492 AK125111	76498	+	BC110367 TSC_hg19_v1_chr15_+_75494233	76519	+	AK027491|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AY358848|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##NM_021823|PPCDC|60490|phosphopantothenoylcysteine decarboxylase##AK126940|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178111|SCAMP5|192683|secretory carrier membrane protein 5##NM_001178112|SCAMP5|192683|secretory carrier membrane protein 5##NM_138967|SCAMP5|192683|secretory carrier membrane protein 5##AK056438|SCAMP5|192683|secretory carrier membrane protein 5##AL834226|SCAMP5|192683|secretory carrier membrane protein 5##AK301505|SCAMP5|192683|secretory carrier membrane protein 5##AF495715|SCAMP5|192683|secretory carrier membrane protein 5##AK127480|SCAMP5|192683|secretory carrier membrane protein 5##CR936761|SCAMP5|192683|secretory carrier membrane protein 5##AK128205|C15orf39|56905|chromosome 15 open reading frame 39##NM_015492|C15orf39|56905|chromosome 15 open reading frame 39##AK125111|C15orf39|56905|chromosome 15 open reading frame 39##BC110367|C15orf39|56905|chromosome 15 open reading frame 39	0.045984	0.017511	
chr19	10752041	10752163	reg1013917.p1	3.721	+	TSC_hg19_v1_chr19_+_10736228 FN668568 NM_020428 AK314582 BC040556 BC042692	-15883	+	TSC_hg19_v1_chr19_+_10713140 NM_001145056 AK309801 AK027519	-38969	+	CU678450 CU678534 CU678860 BC003612 BC003387 AF020797 AK222946 AK315689 AK023863 BC005021 NM_005498	-54154	-	TSC_hg19_v1_chr19_-_10764518 BC007593 BC014670 AK075016 AK311360 AL832185 BC044911	12409	-	TSC_hg19_v1_chr19_+_10764961 NM_001137673 NM_004516 NM_012218 NM_017620 NM_153464 AB209062	12838	+	U10324 TSC_hg19_v1_chr19_+_10765048 BC048314 BC064836 AK293170 AK291205 AK294084 X98264 AK291617 BC001770	12944	+	FN668568|SLC44A2|57153|solute carrier family 44, member 2##NM_020428|SLC44A2|57153|solute carrier family 44, member 2##AK314582|SLC44A2|57153|solute carrier family 44, member 2##BC040556|SLC44A2|57153|solute carrier family 44, member 2##BC042692|SLC44A2|57153|solute carrier family 44, member 2##NM_001145056|SLC44A2|57153|solute carrier family 44, member 2##AK309801|SLC44A2|57153|solute carrier family 44, member 2##AK027519|SLC44A2|57153|solute carrier family 44, member 2##BC003612|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC003387|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AF020797|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK222946|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK315689|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##AK023863|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC005021|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##NM_005498|AP1M2|10053|adaptor-related protein complex 1, mu 2 subunit##BC007593|LOC147727|147727|uncharacterized LOC147727##BC014670|LOC147727|147727|uncharacterized LOC147727##AK075016|LOC147727|147727|uncharacterized LOC147727##AL832185|LOC147727|147727|uncharacterized LOC147727##BC044911|LOC147727|147727|uncharacterized LOC147727##NM_001137673|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_004516|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_012218|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_017620|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##NM_153464|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AB209062|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##U10324|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC048314|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC064836|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK293170|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291205|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK294084|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##X98264|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##AK291617|ILF3|3609|interleukin enhancer binding factor 3, 90kDa##BC001770|ILF3|3609|interleukin enhancer binding factor 3, 90kDa	0.995961	0.0	denovo_WM_7:-23:0.535
chr19	1648563	1648703	reg1015809.p1	3.721	+	TSC_hg19_v1_chr19_-_1605464 NM_006830	-43160	-	AK312053 TSC_hg19_v1_chr19_-_1605462	-43171	-	TSC_hg19_v1_chr19_-_1605429 BC000462 BC003594 D55636	-43202	-	AB385055 BC110579 BC110580 M31523 NM_001136139	1632	-	M31222 NM_003200 TSC_hg19_v1_chr19_-_1652346	3706	-	NM_001080488 TSC_hg19_v1_chr19_+_1753823	105119	+	NM_006830|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##AK312053|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##BC000462|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##BC003594|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##D55636|UQCR11|10975|ubiquinol-cytochrome c reductase, complex III subunit XI##BC110580|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31523|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001136139|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##M31222|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_003200|TCF3|6929|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)##NM_001080488|ONECUT3|390874|one cut homeobox 3	0.0	0.0	
chr2	127844048	127844130	reg1010027.p1	3.721	+	TSC_hg19_v1_chr2_+_127413752 BC016653 AB463694 M11802 M36284 X51973 M28335	-430297	+	BC106051 TSC_hg19_v1_chr2_+_127413722 NM_002101 NM_016815 BC104246 BC104247 X12496 AK312032	-430382	+	TSC_hg19_v1_chr2_+_124782863 AK056528 NM_130773	-3061225	+	TSC_hg19_v1_chr2_-_127864659 AF004015 AF043898 AF043899 AF043900 AF043901 AF411606 AM392950 BT006865 EU831833 AB587383 U87558 U68485 AF068914 AF068915 AF068916 AF068917 AF068918 BC004101 AK295300 AF001383 AL713697 NM_004305 NM_139343 NM_139344 NM_139345 NM_139346 NM_139347 NM_139348 NM_139349 NM_139350 NM_139351	20652	-	BC039307 NM_001001665	119253	-	AK131190 TSC_hg19_v1_chr2_-_127977781	133628	-	BC016653|GYPC|2995|glycophorin C (Gerbich blood group)##M11802|GYPC|2995|glycophorin C (Gerbich blood group)##M36284|GYPC|2995|glycophorin C (Gerbich blood group)##X51973|GYPC|2995|glycophorin C (Gerbich blood group)##M28335|GYPC|2995|glycophorin C (Gerbich blood group)##BC106051|GYPC|2995|glycophorin C (Gerbich blood group)##NM_002101|GYPC|2995|glycophorin C (Gerbich blood group)##NM_016815|GYPC|2995|glycophorin C (Gerbich blood group)##BC104246|GYPC|2995|glycophorin C (Gerbich blood group)##BC104247|GYPC|2995|glycophorin C (Gerbich blood group)##X12496|GYPC|2995|glycophorin C (Gerbich blood group)##AK312032|GYPC|2995|glycophorin C (Gerbich blood group)##AK056528|CNTNAP5|129684|contactin associated protein-like 5##NM_130773|CNTNAP5|129684|contactin associated protein-like 5##AF004015|BIN1|274|bridging integrator 1##AF043898|BIN1|274|bridging integrator 1##AF043899|BIN1|274|bridging integrator 1##AF043900|BIN1|274|bridging integrator 1##AF043901|BIN1|274|bridging integrator 1##AM392950|BIN1|274|bridging integrator 1##BT006865|BIN1|274|bridging integrator 1##EU831833|BIN1|274|bridging integrator 1##U87558|BIN1|274|bridging integrator 1##U68485|BIN1|274|bridging integrator 1##AF068914|BIN1|274|bridging integrator 1##AF068915|BIN1|274|bridging integrator 1##AF068916|BIN1|274|bridging integrator 1##AF068917|BIN1|274|bridging integrator 1##AF068918|BIN1|274|bridging integrator 1##BC004101|BIN1|274|bridging integrator 1##AK295300|BIN1|274|bridging integrator 1##AF001383|BIN1|274|bridging integrator 1##AL713697|BIN1|274|bridging integrator 1##NM_004305|BIN1|274|bridging integrator 1##NM_139343|BIN1|274|bridging integrator 1##NM_139344|BIN1|274|bridging integrator 1##NM_139345|BIN1|274|bridging integrator 1##NM_139346|BIN1|274|bridging integrator 1##NM_139347|BIN1|274|bridging integrator 1##NM_139348|BIN1|274|bridging integrator 1##NM_139349|BIN1|274|bridging integrator 1##NM_139350|BIN1|274|bridging integrator 1##NM_139351|BIN1|274|bridging integrator 1##BC039307|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##NM_001001665|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1##AK131190|CYP27C1|339761|cytochrome P450, family 27, subfamily C, polypeptide 1	0.979967	0.0	denovo_WM_7:5:0.407	denovo_WM_7:6:0.363
chr4	42080654	42080732	reg1017302.p2	3.721	+	TSC_hg19_v1_chr4_+_41992550 AF006621 BC000240 BC007732 AY319413 AK225470 AB464232 AY594282	-88086	+	TSC_hg19_v1_chr4_+_41992546 AK299917	-88148	+	TSC_hg19_v1_chr4_+_41992531 AK312838 NM_006345 BC016949	-88176	+	TSC_hg19_v1_chr4_-_42154134 BC128592 BC128593	73467	-	TSC_hg19_v1_chr4_-_42154719 AK125953 AB463533	73963	-	AB126828 AB126829 NM_001159547 NM_207406	74201	-	AF006621|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##BC000240|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##BC007732|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##AY319413|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##AK225470|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##AY594282|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##AK299917|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##AK312838|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##NM_006345|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##BC016949|SLC30A9|10463|solute carrier family 30 (zinc transporter), member 9##BC128592|BEND4|389206|BEN domain containing 4##BC128593|BEND4|389206|BEN domain containing 4##AK125953|BEND4|389206|BEN domain containing 4##AB126828|BEND4|389206|BEN domain containing 4##AB126829|BEND4|389206|BEN domain containing 4##NM_001159547|BEND4|389206|BEN domain containing 4##NM_207406|BEND4|389206|BEN domain containing 4	0.197641	0.0	
chr6	152636659	152636731	reg1003995.p1	3.721	+	TSC_hg19_v1_chr6_-_152623240 AK310977	-13444	-	X03635 AK304833 M69297 AF258449 AF258450 AF258451 NM_000125 TSC_hg19_v1_chr6_+_152128813 BC128573 BC128574 EU930361 AB587448 AB307713 AY750962 JF810888 U47678	-507829	+	NM_001122740 U68067	-508242	+	TSC_hg19_v1_chr6_-_152702331 BX537517	65646	-	AK056122 TSC_hg19_v1_chr6_-_152702456 BC039121	65779	-	AF535142 NM_033071 TSC_hg19_v1_chr6_-_152958011	321347	-	AK310977|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##X03635|ESR1|2099|estrogen receptor 1##AK304833|ESR1|2099|estrogen receptor 1##M69297|ESR1|2099|estrogen receptor 1##AF258449|ESR1|2099|estrogen receptor 1##AF258450|ESR1|2099|estrogen receptor 1##AF258451|ESR1|2099|estrogen receptor 1##NM_000125|ESR1|2099|estrogen receptor 1##BC128573|ESR1|2099|estrogen receptor 1##BC128574|ESR1|2099|estrogen receptor 1##AB307713|ESR1|2099|estrogen receptor 1##AY750962|ESR1|2099|estrogen receptor 1##JF810888|ESR1|2099|estrogen receptor 1##U47678|ESR1|2099|estrogen receptor 1##NM_001122740|ESR1|2099|estrogen receptor 1##U68067|ESR1|2099|estrogen receptor 1##BX537517|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AK056122|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##BC039121|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##AF535142|SYNE1|23345|spectrin repeat containing, nuclear envelope 1##NM_033071|SYNE1|23345|spectrin repeat containing, nuclear envelope 1	0.0	0.0	
chrX	19589869	19589996	reg1019252.p1	3.721	+	NM_001001671	-56554	-	NM_000284 NM_001173454 NM_001173455 NM_001173456 TSC_hg19_v1_chrX_+_19362044 AK293250 AK296341 AK312263 AK222988 L13318 L48690 AK129887 AK222740 J03503 AK296457 BC002406 X52710 X52709 J03575 M24848 DQ891865 DQ895054 DQ895057	-227850	+	BC099901 X81892 AK291012 TSC_hg19_v1_chrX_-_19140680 AF538954 AF539455 AF539456 AY143364 AY143365 AY143366 AY143367 AY148343 BC063315 NM_001079858 NM_001079859 NM_001079860 NM_001184833 NM_001184834 NM_001184835 NM_001184836 NM_001184837 NM_005756	-449265	-	TSC_hg19_v1_chrX_-_19689029 AK293237 NM_001184960	99124	-	AK293234 AF542051 TSC_hg19_v1_chrX_-_19817892	227943	-	TSC_hg19_v1_chrX_-_19817907 NM_001024666	227980	-	NM_001001671|MAP3K15|389840|mitogen-activated protein kinase kinase kinase 15##NM_000284|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173454|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173455|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##NM_001173456|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK293250|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296341|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK312263|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222988|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L13318|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##L48690|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK129887|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK222740|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03503|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##AK296457|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC002406|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52710|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##X52709|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##J03575|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##M24848|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ891865|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895054|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##DQ895057|PDHA1|5160|pyruvate dehydrogenase (lipoamide) alpha 1##BC099901|GPR64|10149|G protein-coupled receptor 64##X81892|GPR64|10149|G protein-coupled receptor 64##AK291012|GPR64|10149|G protein-coupled receptor 64##AF538954|GPR64|10149|G protein-coupled receptor 64##AF539455|GPR64|10149|G protein-coupled receptor 64##AF539456|GPR64|10149|G protein-coupled receptor 64##AY143364|GPR64|10149|G protein-coupled receptor 64##AY143365|GPR64|10149|G protein-coupled receptor 64##AY143366|GPR64|10149|G protein-coupled receptor 64##AY143367|GPR64|10149|G protein-coupled receptor 64##AY148343|GPR64|10149|G protein-coupled receptor 64##BC063315|GPR64|10149|G protein-coupled receptor 64##NM_001079858|GPR64|10149|G protein-coupled receptor 64##NM_001079859|GPR64|10149|G protein-coupled receptor 64##NM_001079860|GPR64|10149|G protein-coupled receptor 64##NM_001184833|GPR64|10149|G protein-coupled receptor 64##NM_001184834|GPR64|10149|G protein-coupled receptor 64##NM_001184835|GPR64|10149|G protein-coupled receptor 64##NM_001184836|GPR64|10149|G protein-coupled receptor 64##NM_001184837|GPR64|10149|G protein-coupled receptor 64##NM_005756|GPR64|10149|G protein-coupled receptor 64##AK293237|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001184960|SH3KBP1|30011|SH3-domain kinase binding protein 1##AK293234|SH3KBP1|30011|SH3-domain kinase binding protein 1##AF542051|SH3KBP1|30011|SH3-domain kinase binding protein 1##NM_001024666|SH3KBP1|30011|SH3-domain kinase binding protein 1	0.992187	0.0	denovo_WM_7:23:0.715	denovo_WM_7:24:0.277
chr10	129885950	129886054	reg1010548.p1	3.720	+	BX648180 NM_130435 BC071573 TSC_hg19_v1_chr10_+_129845875 AK290414 AJ430580 AJ315969	-40148	+	TSC_hg19_v1_chr10_+_129705366 AF406557 BC050062 X54134	-180547	+	TSC_hg19_v1_chr10_+_129705334 BC031078 NM_006504	-180680	+	NM_001145966 NM_002417 X65550 X65551 TSC_hg19_v1_chr10_-_129924589	38526	-	NM_002412 TSC_hg19_v1_chr10_+_131265475 AK293593 M29971	1379469	+	TSC_hg19_v1_chr10_+_131265507 BC000824	1379512	+	BX648180|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_130435|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC071573|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AK290414|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ430580|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AJ315969|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##AF406557|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC050062|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##X54134|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##BC031078|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_006504|PTPRE|5791|protein tyrosine phosphatase, receptor type, E##NM_001145966|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002417|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65550|MKI67|4288|antigen identified by monoclonal antibody Ki-67##X65551|MKI67|4288|antigen identified by monoclonal antibody Ki-67##NM_002412|MGMT|4255|O-6-methylguanine-DNA methyltransferase##AK293593|MGMT|4255|O-6-methylguanine-DNA methyltransferase##M29971|MGMT|4255|O-6-methylguanine-DNA methyltransferase##BC000824|MGMT|4255|O-6-methylguanine-DNA methyltransferase	0.997463	0.0	
chr1	236545109	236545208	reg1002101.p2	3.720	+	TSC_hg19_v1_chr1_-_236445302 AK293941 NM_019891	-99842	-	CU689552 BC032823 AF252538 AK315351 TSC_hg19_v1_chr1_-_236445259 BC044573	-99970	-	BC012100 NM_003272 TSC_hg19_v1_chr1_+_236305838 AK295408 AK312908 AK223632 AK301552 AF027826 AY242135 CR541770	-239282	+	AK290862 AY028913 NM_145861 BC106873 BC106874 BC114557 BC114560 BC128082	12525	+	AK096339 NM_080738 AY028914 AK291930 BC006533 AY071862	13664	+	NM_201545 AK098613	136383	+	AK293941|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##NM_019891|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC032823|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AF252538|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##AK315351|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC044573|ERO1LB|56605|ERO1-like beta (S. cerevisiae)##BC012100|GPR137B|7107|G protein-coupled receptor 137B##NM_003272|GPR137B|7107|G protein-coupled receptor 137B##AK295408|GPR137B|7107|G protein-coupled receptor 137B##AK312908|GPR137B|7107|G protein-coupled receptor 137B##AK223632|GPR137B|7107|G protein-coupled receptor 137B##AK301552|GPR137B|7107|G protein-coupled receptor 137B##AF027826|GPR137B|7107|G protein-coupled receptor 137B##AY242135|GPR137B|7107|G protein-coupled receptor 137B##CR541770|GPR137B|7107|G protein-coupled receptor 137B##AK290862|EDARADD|128178|EDAR-associated death domain##AY028913|EDARADD|128178|EDAR-associated death domain##NM_145861|EDARADD|128178|EDAR-associated death domain##BC114557|EDARADD|128178|EDAR-associated death domain##BC114560|EDARADD|128178|EDAR-associated death domain##BC128082|EDARADD|128178|EDAR-associated death domain##AK096339|EDARADD|128178|EDAR-associated death domain##NM_080738|EDARADD|128178|EDAR-associated death domain##AY028914|EDARADD|128178|EDAR-associated death domain##AK291930|EDARADD|128178|EDAR-associated death domain##BC006533|EDARADD|128178|EDAR-associated death domain##AY071862|EDARADD|128178|EDAR-associated death domain##NM_201545|LGALS8|3964|lectin, galactoside-binding, soluble, 8##AK098613|LGALS8|3964|lectin, galactoside-binding, soluble, 8	1.983408	0.0	
chr12	66481331	66481511	reg1019036.p2	3.720	+	TSC_hg19_v1_chr12_+_66218882 JF268496 S80262 GQ272323 AF533652 AF533653 AF533654	-262408	+	TSC_hg19_v1_chr12_+_66218605 AK311399	-262814	+	TSC_hg19_v1_chr12_+_66218262 AY601861 AY601862 AY601863 AY601864 AY601865 AY601866 AY601867 NM_003483 NM_003484 U28749 Z31595	-263214	+	TSC_hg19_v1_chr12_-_66524536 BC070232 BC006002 BC107780 AK091568 AX747065 NM_032338	43104	-	AB464309 TSC_hg19_v1_chr12_-_66563773 AF182414 AF161526 BC020613 AF113127 AK301359 AF182041 AK075069 AK225158 BC070366 BC052273 BC094852	82333	-	TSC_hg19_v1_chr12_-_66563806 BC004401 NM_016056	82381	-	AF533652|HMGA2|8091|high mobility group AT-hook 2##AF533653|HMGA2|8091|high mobility group AT-hook 2##AF533654|HMGA2|8091|high mobility group AT-hook 2##AK311399|HMGA2|8091|high mobility group AT-hook 2##AY601861|HMGA2|8091|high mobility group AT-hook 2##AY601862|HMGA2|8091|high mobility group AT-hook 2##AY601863|HMGA2|8091|high mobility group AT-hook 2##AY601864|HMGA2|8091|high mobility group AT-hook 2##AY601865|HMGA2|8091|high mobility group AT-hook 2##AY601866|HMGA2|8091|high mobility group AT-hook 2##AY601867|HMGA2|8091|high mobility group AT-hook 2##NM_003483|HMGA2|8091|high mobility group AT-hook 2##NM_003484|HMGA2|8091|high mobility group AT-hook 2##U28749|HMGA2|8091|high mobility group AT-hook 2##Z31595|HMGA2|8091|high mobility group AT-hook 2##BC070232|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##BC006002|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##BC107780|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##AK091568|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##NM_032338|LLPH|84298|LLP homolog, long-term synaptic facilitation (Aplysia)##AF182414|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF161526|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC020613|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF113127|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AF182041|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AK075069|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##AK225158|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC070366|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC052273|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC094852|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##BC004401|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4##NM_016056|TMBIM4|51643|transmembrane BAX inhibitor motif containing 4	0.0	0.997685	CTCF.p2:-76:0.998
chr13	103821683	103821788	reg1012429.p1	3.720	+	NM_000452 U10417	-102540	-	TSC_hg19_v1_chr13_+_103498385 BX647399 AK303558 X69978 AK299758 L20046 D16305 CU689168 DQ891818 DQ895006	-323249	+	AK294708 TSC_hg19_v1_chr13_+_103498254	-323481	+	AY138547 NM_001161814 DQ343761 NM_172370 AY223901 AY170469 AY170470	2296569	+	NM_001161812 AY138546 BC121090 BC121091 DQ357223 DQ386869 DQ386870	2296856	+	CU686759 BC069342 BC074856 BC074857 U16797 U81262 AB529075 TSC_hg19_v1_chr13_-_107187325 BC105955 BC105956 BC105957 L38734 NM_004093	3365614	-	NM_000452|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##U10417|SLC10A2|6555|solute carrier family 10 (sodium/bile acid cotransporter family), member 2##BX647399|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK303558|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##X69978|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK299758|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##L20046|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##D16305|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ891818|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##DQ895006|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AK294708|ERCC5|2073|excision repair cross-complementing rodent repair deficiency, complementation group 5##AY138547|DAOA|267012|D-amino acid oxidase activator##NM_001161814|DAOA|267012|D-amino acid oxidase activator##DQ343761|DAOA|267012|D-amino acid oxidase activator##NM_172370|DAOA|267012|D-amino acid oxidase activator##AY223901|DAOA|267012|D-amino acid oxidase activator##AY170469|DAOA|267012|D-amino acid oxidase activator##AY170470|DAOA|267012|D-amino acid oxidase activator##NM_001161812|DAOA|267012|D-amino acid oxidase activator##AY138546|DAOA|267012|D-amino acid oxidase activator##BC121090|DAOA|267012|D-amino acid oxidase activator##BC121091|DAOA|267012|D-amino acid oxidase activator##DQ357223|DAOA|267012|D-amino acid oxidase activator##DQ386869|DAOA|267012|D-amino acid oxidase activator##DQ386870|DAOA|267012|D-amino acid oxidase activator##BC069342|EFNB2|1948|ephrin-B2##BC074856|EFNB2|1948|ephrin-B2##BC074857|EFNB2|1948|ephrin-B2##U16797|EFNB2|1948|ephrin-B2##U81262|EFNB2|1948|ephrin-B2##BC105955|EFNB2|1948|ephrin-B2##BC105956|EFNB2|1948|ephrin-B2##BC105957|EFNB2|1948|ephrin-B2##L38734|EFNB2|1948|ephrin-B2##NM_004093|EFNB2|1948|ephrin-B2	0.967814	0.0	denovo_WM_7:107:0.952
chr13	47167411	47167478	reg1016328.p1	3.720	+	TSC_hg19_v1_chr13_+_47127518 AB385418 HQ258591	-39937	+	BC112937 BC117472 BC143883 TSC_hg19_v1_chr13_+_47127418	-40024	+	TSC_hg19_v1_chr13_+_47127313 AK292898 AB023233	-40121	+	TSC_hg19_v1_chr13_-_47371297 BC001169 D28416 AK098540 AF112219 NM_001984	203871	-	AK314132 BX647777 AK302787 NM_000621 NM_001165947	303623	-	TSC_hg19_v1_chr13_-_48575410 AB529139 BC027587 AK302311 AK315513 AK001458 AK316041 BX640602 AF087890 AK001847 AK225452 AB035863 NM_003850	1408007	-	HQ258591|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC112937|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC117472|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC143883|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AK292898|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##AB023233|LRCH1|23143|leucine-rich repeats and calponin homology (CH) domain containing 1##BC001169|ESD|2098|esterase D##D28416|ESD|2098|esterase D##AK098540|ESD|2098|esterase D##AF112219|ESD|2098|esterase D##NM_001984|ESD|2098|esterase D##AK314132|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BX647777|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##AK302787|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_000621|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##NM_001165947|HTR2A|3356|5-hydroxytryptamine (serotonin) receptor 2A##BC027587|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK302311|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK315513|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001458|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK316041|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##BX640602|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AF087890|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK001847|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AK225452|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##AB035863|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit##NM_003850|SUCLA2|8803|succinate-CoA ligase, ADP-forming, beta subunit	2.134774	0.0	denovo_WM_7:-14:0.238	denovo_WM_7:-15:0.238	denovo_WM_7:-16:0.238	denovo_WM_7:-17:0.238	denovo_WM_7:-35:0.300	denovo_WM_7:-67:0.549
chr2	44332117	44332230	reg1013519.p1	3.720	+	TSC_hg19_v1_chr2_-_44223145 BC130285 AY289212 NM_133259	-109034	-	BC026034 TSC_hg19_v1_chr2_-_44223116	-109055	-	AK299869 TSC_hg19_v1_chr2_-_44223114 AK125781 AK290016 AK308348	-109060	-	TSC_hg19_v1_chr2_+_44396013 NM_001033556 NM_001033557 NM_002706 NM_177968 NM_177969 AK056009 AK291214 DQ023508 DQ023509 DQ023510 DQ023511 BC064381 AJ271832 AJ271835 BC012002	63842	+	TSC_hg19_v1_chr2_+_44396066 AL833035	63937	+	NM_000341 BC022386 AK309145 AK313157 AB033549 AK091932 AK289636 L11696 M95548 AK223146 BC093624 BC093626 D82326 CU692594 DQ892031 DQ895222 DQ023513 DQ023515 DQ023516 DQ023517	170462	+	BC130285|LRPPRC|10128|leucine-rich PPR-motif containing##AY289212|LRPPRC|10128|leucine-rich PPR-motif containing##NM_133259|LRPPRC|10128|leucine-rich PPR-motif containing##BC026034|LRPPRC|10128|leucine-rich PPR-motif containing##AK299869|LRPPRC|10128|leucine-rich PPR-motif containing##AK125781|LRPPRC|10128|leucine-rich PPR-motif containing##AK290016|LRPPRC|10128|leucine-rich PPR-motif containing##AK308348|LRPPRC|10128|leucine-rich PPR-motif containing##NM_001033556|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_001033557|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_002706|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177968|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_177969|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK056009|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AK291214|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023508|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023509|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023510|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##DQ023511|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC064381|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271832|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AJ271835|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##BC012002|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##AL833035|PPM1B|5495|protein phosphatase, Mg2+/Mn2+ dependent, 1B##NM_000341|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC022386|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK309145|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK313157|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AB033549|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK091932|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK289636|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##L11696|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##M95548|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##AK223146|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093624|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##BC093626|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ892031|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ895222|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023513|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023515|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023516|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1##DQ023517|SLC3A1|6519|solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1	0.0	0.0	
chr3	4106862	4106999	reg1017953.p1	3.720	+	TSC_hg19_v1_chr3_+_3841114 NM_020873	-265831	+	TSC_hg19_v1_chr3_-_3221401 NM_001173482 NM_016302	-885529	-	TSC_hg19_v1_chr3_-_3221386 AK301423	-885544	-	AK307537 NM_001243723 NM_006515 TSC_hg19_v1_chr3_+_4345015	238078	+	TSC_hg19_v1_chr3_+_4345048 AK222734 AK297865 AK302296 AB590082 AF054989 BC011635 BC008931 U80776 AY952295 CU679994	238133	+	AY208752 AY323910 AK057983 TSC_hg19_v1_chr3_-_4508936 AK302018 AB448737 BC110862	402002	-	NM_020873|LRRN1|57633|leucine rich repeat neuronal 1##NM_001173482|CRBN|51185|cereblon##NM_016302|CRBN|51185|cereblon##AK301423|CRBN|51185|cereblon##AK307537|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_001243723|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_006515|SETMAR|6419|SET domain and mariner transposase fusion gene##AK222734|SETMAR|6419|SET domain and mariner transposase fusion gene##AK297865|SETMAR|6419|SET domain and mariner transposase fusion gene##AK302296|SETMAR|6419|SET domain and mariner transposase fusion gene##AF054989|SETMAR|6419|SET domain and mariner transposase fusion gene##BC011635|SETMAR|6419|SET domain and mariner transposase fusion gene##BC008931|SETMAR|6419|SET domain and mariner transposase fusion gene##U80776|SETMAR|6419|SET domain and mariner transposase fusion gene##AY952295|SETMAR|6419|SET domain and mariner transposase fusion gene##AY208752|SUMF1|285362|sulfatase modifying factor 1##AY323910|SUMF1|285362|sulfatase modifying factor 1##AK057983|SUMF1|285362|sulfatase modifying factor 1##AK302018|SUMF1|285362|sulfatase modifying factor 1##AB448737|SUMF1|285362|sulfatase modifying factor 1##BC110862|SUMF1|285362|sulfatase modifying factor 1	0.794518	0.0	denovo_WM_7:-18:0.421
chr4	48214209	48214320	reg1018269.p1	3.720	+	BC017829 L27071 NM_003328	-78006	-	TSC_hg19_v1_chr4_+_48018788 BC067881 CR749484 NM_207330 AK095299	-195461	+	X64802 TSC_hg19_v1_chr4_-_48018662	-195627	-	BC101711 BC101713 BC143487 NM_003215 TSC_hg19_v1_chr4_-_48271858	57571	-	BC040993 TSC_hg19_v1_chr4_+_48343485 AK291006	129147	+	TSC_hg19_v1_chr4_+_48343571 BC006139 BC007701 BC012067 NM_020846 AB040891	129349	+	BC017829|TXK|7294|TXK tyrosine kinase##L27071|TXK|7294|TXK tyrosine kinase##NM_003328|TXK|7294|TXK tyrosine kinase##BC067881|NIPAL1|152519|NIPA-like domain containing 1##CR749484|NIPAL1|152519|NIPA-like domain containing 1##NM_207330|NIPAL1|152519|NIPA-like domain containing 1##AK095299|NIPAL1|152519|NIPA-like domain containing 1##X64802|CNGA1|1259|cyclic nucleotide gated channel alpha 1##BC101711|TEC|7006|tec protein tyrosine kinase##BC101713|TEC|7006|tec protein tyrosine kinase##BC143487|TEC|7006|tec protein tyrosine kinase##NM_003215|TEC|7006|tec protein tyrosine kinase##BC040993|SLAIN2|57606|SLAIN motif family, member 2##AK291006|SLAIN2|57606|SLAIN motif family, member 2##BC006139|SLAIN2|57606|SLAIN motif family, member 2##BC007701|SLAIN2|57606|SLAIN motif family, member 2##BC012067|SLAIN2|57606|SLAIN motif family, member 2##NM_020846|SLAIN2|57606|SLAIN motif family, member 2##AB040891|SLAIN2|57606|SLAIN motif family, member 2	0.038637	0.0	
chr5	68728259	68728389	reg1005410.p3	3.720	+	NM_001038603 NM_001244734 AK055094 BC033689 DQ682656 DQ682657 AK292962	-17378	+	AF085736 NM_133339	-61044	+	NM_133340 NM_133341 AJ001642 AJ004977 AF098533 AF098534	-61436	+	NM_002538 U53823	59794	+	U49184 TSC_hg19_v1_chr5_+_68788631 NM_001205254 AK313501 BC029886 AK290697	60223	+	NM_001205255 FJ786083 FJ786084 GQ225096 GQ225097 GQ225098 GQ402517 AB587564 DQ892423 DQ895637 AB451306 AB451437	71713	+	NM_001038603|MARVELD2|153562|MARVEL domain containing 2##NM_001244734|MARVELD2|153562|MARVEL domain containing 2##AK055094|MARVELD2|153562|MARVEL domain containing 2##BC033689|MARVELD2|153562|MARVEL domain containing 2##DQ682656|MARVELD2|153562|MARVEL domain containing 2##DQ682657|MARVELD2|153562|MARVEL domain containing 2##AK292962|MARVELD2|153562|MARVEL domain containing 2##AF085736|RAD17|5884|RAD17 homolog (S. pombe)##NM_133339|RAD17|5884|RAD17 homolog (S. pombe)##NM_133340|RAD17|5884|RAD17 homolog (S. pombe)##NM_133341|RAD17|5884|RAD17 homolog (S. pombe)##AJ001642|RAD17|5884|RAD17 homolog (S. pombe)##AJ004977|RAD17|5884|RAD17 homolog (S. pombe)##AF098533|RAD17|5884|RAD17 homolog (S. pombe)##AF098534|RAD17|5884|RAD17 homolog (S. pombe)##NM_002538|OCLN|100506658|occludin##U53823|OCLN|100506658|occludin##U49184|OCLN|100506658|occludin##NM_001205254|OCLN|100506658|occludin##AK313501|OCLN|100506658|occludin##BC029886|OCLN|100506658|occludin##AK290697|OCLN|100506658|occludin##NM_001205255|OCLN|100506658|occludin##FJ786083|OCLN|100506658|occludin##FJ786084|OCLN|100506658|occludin##GQ225096|OCLN|100506658|occludin##GQ225097|OCLN|100506658|occludin##GQ225098|OCLN|100506658|occludin##GQ402517|OCLN|100506658|occludin##DQ892423|OCLN|100506658|occludin##DQ895637|OCLN|100506658|occludin##AB451306|OCLN|100506658|occludin##AB451437|OCLN|100506658|occludin	0.0	0.0	
chr7	99965571	99965645	reg1015436.p2	3.720	+	AJ400845 NM_178238 AF161081	-9977	+	TSC_hg19_v1_chr7_+_99933808 AL834317	-31786	+	TSC_hg19_v1_chr7_+_99933747 AK056412 AK310352	-31853	+	AF161080 NM_013439 NM_178272 NM_178273 BC017812 TSC_hg19_v1_chr7_+_99971109 AJ400841	5488	+	TSC_hg19_v1_chr7_+_99971132 AJ400842 AJ400843 AK298731 AB590724 CU676074	5597	+	AK302108 AK300745 TSC_hg19_v1_chr7_-_100026299 AL136735 NM_017984 AK299989	60694	-	AJ400845|PILRB|29990|paired immunoglobin-like type 2 receptor beta##NM_178238|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161081|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AL834317|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK056412|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AK310352|PILRB|29990|paired immunoglobin-like type 2 receptor beta##AF161080|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_013439|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178272|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##NM_178273|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##BC017812|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400841|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400842|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AJ400843|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK298731|PILRA|29992|paired immunoglobin-like type 2 receptor alpha##AK302108|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK300745|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AL136735|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##NM_017984|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1##AK299989|ZCWPW1|55063|zinc finger, CW type with PWWP domain 1	0.996445	0.0	
chr10	49786636	49786762	reg1017236.p1	3.719	+	BC130570 BC130572 BC144063 L26318 NM_002750 NM_139046 NM_139047 NM_139049 U35004 U35005 U34822 HQ258413 AB527605 AB451231 AB451271 AB451354 AB451398 DQ234352	-177027	+	TSC_hg19_v1_chr10_+_49514722 AK292523	-271913	+	CR749241 NM_001018071	-303773	-	BC126444 BC136319 TSC_hg19_v1_chr10_-_49813119 AY324801 NM_021226 EF560749 BC037890 BC047096	26388	-	TSC_hg19_v1_chr10_-_49864302 AK055937	77606	-	TSC_hg19_v1_chr10_+_49892917 BC034937	106191	+	BC130570|MAPK8|5599|mitogen-activated protein kinase 8##BC130572|MAPK8|5599|mitogen-activated protein kinase 8##BC144063|MAPK8|5599|mitogen-activated protein kinase 8##L26318|MAPK8|5599|mitogen-activated protein kinase 8##NM_002750|MAPK8|5599|mitogen-activated protein kinase 8##NM_139046|MAPK8|5599|mitogen-activated protein kinase 8##NM_139047|MAPK8|5599|mitogen-activated protein kinase 8##NM_139049|MAPK8|5599|mitogen-activated protein kinase 8##U35004|MAPK8|5599|mitogen-activated protein kinase 8##U35005|MAPK8|5599|mitogen-activated protein kinase 8##U34822|MAPK8|5599|mitogen-activated protein kinase 8##HQ258413|MAPK8|5599|mitogen-activated protein kinase 8##AB451231|MAPK8|5599|mitogen-activated protein kinase 8##AB451271|MAPK8|5599|mitogen-activated protein kinase 8##AB451354|MAPK8|5599|mitogen-activated protein kinase 8##AB451398|MAPK8|5599|mitogen-activated protein kinase 8##DQ234352|MAPK8|5599|mitogen-activated protein kinase 8##AK292523|MAPK8|5599|mitogen-activated protein kinase 8##CR749241|FRMPD2|143162|FERM and PDZ domain containing 2##NM_001018071|FRMPD2|143162|FERM and PDZ domain containing 2##BC126444|ARHGAP22|58504|Rho GTPase activating protein 22##BC136319|ARHGAP22|58504|Rho GTPase activating protein 22##AY324801|ARHGAP22|58504|Rho GTPase activating protein 22##NM_021226|ARHGAP22|58504|Rho GTPase activating protein 22##EF560749|ARHGAP22|58504|Rho GTPase activating protein 22##BC047096|ARHGAP22|58504|Rho GTPase activating protein 22##AK055937|ARHGAP22|58504|Rho GTPase activating protein 22##BC034937|WDFY4|57705|WDFY family member 4	0.047521	0.0	
chr11	47587988	47588099	reg1017742.p1	3.719	+	TSC_hg19_v1_chr11_+_47587150 AK294640 BC107573 BC020242 CU676524 AY333987 EU831440 EU831532	-887	+	AK127967 BC073798 NM_001143984 NM_175732	-1109	+	TSC_hg19_v1_chr11_-_47574804 NM_006560	-13258	-	TSC_hg19_v1_chr11_-_47600240 AK091607	12231	-	TSC_hg19_v1_chr11_-_47600522 AL713735 AK001749 BC002736 AK222550 AK225062 NM_016506 AK001312 AF151086 AK222985 NM_018095	12471	-	NM_004551 TSC_hg19_v1_chr11_+_47600625 BC000617	12550	+	AK294640|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##BC107573|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##BC020242|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##AY333987|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##EU831440|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##EU831532|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##BC073798|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##NM_001143984|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##NM_175732|PTPMT1|114971|protein tyrosine phosphatase, mitochondrial 1##NM_006560|CELF1|10658|CUGBP, Elav-like family member 1##AK091607|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AL713735|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AK001749|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##BC002736|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AK222550|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AK225062|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##NM_016506|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AK001312|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AF151086|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##AK222985|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##NM_018095|KBTBD4|55709|kelch repeat and BTB (POZ) domain containing 4##NM_004551|NDUFS3|4722|NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)##BC000617|NDUFS3|4722|NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)	0.999297	0.0	
chr15	22569110	22569236	reg1015505.p1	3.719	+	DQ524033 DQ454451 TSC_hg19_v1_chr15_-_22473107 DQ454627 AF343362 EU433867 DQ454583 DQ454461 DQ454478 DQ454710 GQ232839 DQ454494 DQ454810 DQ454920 DQ454517 DQ454648 DQ454831 DQ454837 DQ454839 DQ454830 EF091921 EU350427 GQ232820 GQ232886 DQ454775 EU099074 EU099080 EU099197 DQ454762 AM279532 S79246 FJ385352 FJ385386 FJ385412 U86668 S73132 DQ454486 DQ454484 DQ523962 DQ523967 DQ524021 DQ524117 DQ524132 DQ524138 HM996399 DQ926110 HM995525 AB363221 AJ132847 AJ300792 AY686939 AY941876 AY941978 HM995325 HM995448 HM995452 HM995524 HM995543 HM995544 HM995546 HM995547 HM995794 HM995826 AB063656 AB063670 AB363087 AF062233 AJ244946 AJ245002 AJ245015 AJ245026 AJ245030 AJ279514 AJ279520 AJ279522 AJ579204 AY670752 AY670765 AY670783 AY671055 AY671074 AY671080 AY671081 AY671306 AY671333 AY671362 AY671391 AY671498 AY671678 AY671740 AY671743 AY671757 AY941972 AY941973 AY941975 AY941977 AY941979 DQ431529 DQ431542 HQ689717 U00532 U96389 Z46285 AY686870 AY686907 AY686931 AY944698 AY944714 AY944717 DQ535422 EF178066 EF178072 AY671309 X54445 AY671174 AY671312 AF062120 AF062232 X65905 X65906 X65908 X65909 X65910 Z75399	-95951	-	BC136597 BC136598 NM_001005241 DQ786223	-186728	+	BC136985 NM_001004719	-200696	+	AK097517 NM_001001413	167072	+	NM_001102610 NM_052903 TSC_hg19_v1_chr15_+_22833498 BC039271 AF272884 AB067486 AK056416 AK289859 AK310897 BC071560	264297	+	TSC_hg19_v1_chr15_+_22892666 AY763577	323426	+	BC136597|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136598|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##NM_001005241|OR4N4|283694|olfactory receptor, family 4, subfamily N, member 4##BC136985|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##NM_001004719|OR4M2|390538|olfactory receptor, family 4, subfamily M, member 2##AK097517|GOLGA6L1|283767|golgin A6 family-like 1##NM_001001413|GOLGA6L1|283767|golgin A6 family-like 1##NM_001102610|TUBGCP5|114791|tubulin, gamma complex associated protein 5##NM_052903|TUBGCP5|114791|tubulin, gamma complex associated protein 5##BC039271|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AF272884|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AB067486|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK056416|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK289859|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AK310897|TUBGCP5|114791|tubulin, gamma complex associated protein 5##BC071560|TUBGCP5|114791|tubulin, gamma complex associated protein 5##AY763577|CYFIP1|23191|cytoplasmic FMR1 interacting protein 1	0.0	0.0	
chr15	80260728	80260851	reg1015386.p2	3.719	+	TSC_hg19_v1_chr15_-_80216042 AF249277	-44751	-	NM_001100880 NM_001199757	-45126	-	NM_001199760	-45342	-	AB464467 BT007103 CR541937 CR541962 DQ891109 DQ894290 AY234180 U27467 AL110097 BC016281 AK304026 TSC_hg19_v1_chr15_-_80263526 U29680 Y09397 NM_001114735 NM_004049	2762	-	NM_001242911 NM_001242912 NM_001242917 NM_001242918 NM_019006 TSC_hg19_v1_chr15_+_80351970 AF061739	91153	+	TSC_hg19_v1_chr15_+_80352031 BC005283 AK312646	91240	+	AF249277|ST20|400410|suppressor of tumorigenicity 20##NM_001100880|ST20|400410|suppressor of tumorigenicity 20##NM_001199757|ST20|400410|suppressor of tumorigenicity 20##NM_001199760|ST20-MTHFS|100528021|ST20-MTHFS readthrough##BT007103|BCL2A1|597|BCL2-related protein A1##CR541937|BCL2A1|597|BCL2-related protein A1##CR541962|BCL2A1|597|BCL2-related protein A1##DQ891109|BCL2A1|597|BCL2-related protein A1##DQ894290|BCL2A1|597|BCL2-related protein A1##AY234180|BCL2A1|597|BCL2-related protein A1##U27467|BCL2A1|597|BCL2-related protein A1##AL110097|BCL2A1|597|BCL2-related protein A1##BC016281|BCL2A1|597|BCL2-related protein A1##U29680|BCL2A1|597|BCL2-related protein A1##Y09397|BCL2A1|597|BCL2-related protein A1##NM_001114735|BCL2A1|597|BCL2-related protein A1##NM_004049|BCL2A1|597|BCL2-related protein A1##NM_001242911|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242912|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242917|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_001242918|ZFAND6|54469|zinc finger, AN1-type domain 6##NM_019006|ZFAND6|54469|zinc finger, AN1-type domain 6##AF061739|ZFAND6|54469|zinc finger, AN1-type domain 6##BC005283|ZFAND6|54469|zinc finger, AN1-type domain 6##AK312646|ZFAND6|54469|zinc finger, AN1-type domain 6	0.019176	0.0	
chr16	67599803	67599906	reg1011252.p2	3.719	+	AK314804 NM_001191022 NM_006565 TSC_hg19_v1_chr16_+_67596455 U25435 AB209793 BC014267	-3460	+	BC041086 AK023787 TSC_hg19_v1_chr16_+_67573861 BC098587	-25990	+	AK097087 TSC_hg19_v1_chr16_+_67572105	-27810	+	TSC_hg19_v1_chr16_+_67679038 AB113647 NM_001013838	79172	+	TSC_hg19_v1_chr16_+_67679059 FJ026014 AL832446	79263	+	TSC_hg19_v1_chr16_+_67686881 BC043154	87034	+	AK314804|CTCF|10664|CCCTC-binding factor (zinc finger protein)##NM_001191022|CTCF|10664|CCCTC-binding factor (zinc finger protein)##NM_006565|CTCF|10664|CCCTC-binding factor (zinc finger protein)##U25435|CTCF|10664|CCCTC-binding factor (zinc finger protein)##AB209793|CTCF|10664|CCCTC-binding factor (zinc finger protein)##BC014267|CTCF|10664|CCCTC-binding factor (zinc finger protein)##BC041086|FAM65A|79567|family with sequence similarity 65, member A##AK023787|FAM65A|79567|family with sequence similarity 65, member A##BC098587|FAM65A|79567|family with sequence similarity 65, member A##AK097087|FAM65A|79567|family with sequence similarity 65, member A##AB113647|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##NM_001013838|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##FJ026014|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##AL832446|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing##BC043154|RLTPR|146206|RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing	0.0	0.0	
chr19	2070912	2070978	reg1012750.p2	3.719	+	BC073140 TSC_hg19_v1_chr19_-_2051243 NM_017572 NM_199054	-19712	-	AL137565 TSC_hg19_v1_chr19_-_2046250	-24704	-	TSC_hg19_v1_chr19_-_2042036 AK001730	-28895	-	AB061793 TSC_hg19_v1_chr19_-_2085247 BC015049	14298	-	TSC_hg19_v1_chr19_-_2096266 AK095471 CR627409 NM_130807	25320	-	TSC_hg19_v1_chr19_-_2096297 AL832474	25349	-	BC073140|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_017572|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##NM_199054|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AL137565|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AK001730|MKNK2|2872|MAP kinase interacting serine/threonine kinase 2##AB061793|MOB3A|126308|MOB kinase activator 3A##BC015049|MOB3A|126308|MOB kinase activator 3A##AK095471|MOB3A|126308|MOB kinase activator 3A##CR627409|MOB3A|126308|MOB kinase activator 3A##NM_130807|MOB3A|126308|MOB kinase activator 3A##AL832474|MOB3A|126308|MOB kinase activator 3A	3.425332	0.0	denovo_WM_7:1:0.979	denovo_WM_7:-15:0.721	denovo_WM_7:-45:0.291	denovo_WM_7:-74:0.414	denovo_WM_7:-75:0.414
chr22	38173121	38173226	reg1013484.p1	3.719	+	TSC_hg19_v1_chr22_+_38142316 BC003618	-30856	+	TSC_hg19_v1_chr22_+_38142255 AF281030	-30917	+	TSC_hg19_v1_chr22_+_38142248 BC022200	-30927	+	NM_005318 TSC_hg19_v1_chr22_+_38201113	27942	+	TSC_hg19_v1_chr22_+_38201235 AK091372 AK299209 AK312583 AX746942 BC000145 BC029046	28084	+	TSC_hg19_v1_chr22_+_38201323 CR456502 CU013100 CU013388 DQ890977 DQ894151 AB385232 CR542220	28252	+	BC003618|TRIOBP|11078|TRIO and F-actin binding protein##AF281030|TRIOBP|11078|TRIO and F-actin binding protein##BC022200|TRIOBP|11078|TRIO and F-actin binding protein##NM_005318|H1F0|3005|H1 histone family, member 0##AK091372|H1F0|3005|H1 histone family, member 0##AK312583|H1F0|3005|H1 histone family, member 0##BC000145|H1F0|3005|H1 histone family, member 0##BC029046|H1F0|3005|H1 histone family, member 0##CR456502|H1F0|3005|H1 histone family, member 0##CU013100|H1F0|3005|H1 histone family, member 0##CU013388|H1F0|3005|H1 histone family, member 0##DQ890977|H1F0|3005|H1 histone family, member 0##DQ894151|H1F0|3005|H1 histone family, member 0##CR542220|H1F0|3005|H1 histone family, member 0	0.999365	0.0	denovo_WM_7:-39:0.841
chr3	136422414	136422480	reg1015351.p2	3.719	+	S67325 TSC_hg19_v1_chr3_+_135969193 BC013768 AB209009 BC053661 AK295312 AK130359 AK225733 AK303079 AK225215 AL831978 CU680676	-453245	+	X73424 NM_000532 NM_001178014 TSC_hg19_v1_chr3_+_135969181	-453283	+	TSC_hg19_v1_chr3_-_135914658 AK091956 NM_018133	-507766	-	TSC_hg19_v1_chr3_-_136471221 BC040708 AB210023 AK309934 BC064699 CR749247 NM_005862	48768	-	BC050423 NM_001097599 NM_001097600 NM_025246 TSC_hg19_v1_chr3_+_136537897 BC022557 AK314079 BC000111 AL136661	115472	+	TSC_hg19_v1_chr3_+_136581071 NM_006153 BC006403	158593	+	S67325|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC013768|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AB209009|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##BC053661|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK295312|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK130359|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225733|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK303079|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK225215|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AL831978|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##X73424|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_000532|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##NM_001178014|PCCB|5096|propionyl CoA carboxylase, beta polypeptide##AK091956|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##NM_018133|MSL2|55167|male-specific lethal 2 homolog (Drosophila)##BC040708|STAG1|10274|stromal antigen 1##AB210023|STAG1|10274|stromal antigen 1##AK309934|STAG1|10274|stromal antigen 1##BC064699|STAG1|10274|stromal antigen 1##CR749247|STAG1|10274|stromal antigen 1##NM_005862|STAG1|10274|stromal antigen 1##BC050423|TMEM22|80723|transmembrane protein 22##NM_001097599|TMEM22|80723|transmembrane protein 22##NM_001097600|TMEM22|80723|transmembrane protein 22##NM_025246|TMEM22|80723|transmembrane protein 22##BC022557|TMEM22|80723|transmembrane protein 22##AK314079|TMEM22|80723|transmembrane protein 22##BC000111|TMEM22|80723|transmembrane protein 22##AL136661|TMEM22|80723|transmembrane protein 22##NM_006153|NCK1|4690|NCK adaptor protein 1##BC006403|NCK1|4690|NCK adaptor protein 1	0.0	0.0	
chr3	45120492	45120585	reg1018376.p1	3.719	+	AK312093 NM_003278 X64559 TSC_hg19_v1_chr3_+_45067794 BC011024 CU679874 CR541981 CR542009	-52736	+	TSC_hg19_v1_chr3_+_45017751 BC012831 AB384439 D29958	-102778	+	TSC_hg19_v1_chr3_+_45017742 AK315741 NM_015004 AK295779	-102801	+	AB527383 CU676820 TSC_hg19_v1_chr3_-_45187791	67248	-	TSC_hg19_v1_chr3_-_45187849 AY375452 AY026461	67313	-	TSC_hg19_v1_chr3_-_45187871 BC069254 AY167484 AY358779 AK314441 AF468010 AK026622	67337	-	AK312093|CLEC3B|7123|C-type lectin domain family 3, member B##NM_003278|CLEC3B|7123|C-type lectin domain family 3, member B##X64559|CLEC3B|7123|C-type lectin domain family 3, member B##BC011024|CLEC3B|7123|C-type lectin domain family 3, member B##CR541981|CLEC3B|7123|C-type lectin domain family 3, member B##CR542009|CLEC3B|7123|C-type lectin domain family 3, member B##BC012831|EXOSC7|23016|exosome component 7##D29958|EXOSC7|23016|exosome component 7##AK315741|EXOSC7|23016|exosome component 7##NM_015004|EXOSC7|23016|exosome component 7##AK295779|EXOSC7|23016|exosome component 7##AY375452|CDCP1|64866|CUB domain containing protein 1##AY026461|CDCP1|64866|CUB domain containing protein 1##BC069254|CDCP1|64866|CUB domain containing protein 1##AY167484|CDCP1|64866|CUB domain containing protein 1##AY358779|CDCP1|64866|CUB domain containing protein 1##AK314441|CDCP1|64866|CUB domain containing protein 1##AF468010|CDCP1|64866|CUB domain containing protein 1##AK026622|CDCP1|64866|CUB domain containing protein 1	0.997179	0.106897	denovo_WM_7:-43:0.976
chr6	26172702	26172824	reg1002959.p2	3.719	+	TSC_hg19_v1_chr6_+_26158349 NM_021063 NM_138720 AK292712 BC002842 AJ223353 AB463734 BC096122	-14399	+	NM_005321 TSC_hg19_v1_chr6_+_26156558 BC096168 BC096169 BC096170 BC099632 EF065554 EF065555	-16165	+	TSC_hg19_v1_chr6_+_26156555 BC055095 AK313681	-16209	+	BC101748 BC101750 EU446967 NM_003523	11227	+	AB528805 BC128104 BC128105 BC143045 NM_003539 TSC_hg19_v1_chr6_-_26189339	16559	-	CU689152 DQ892795 DQ896042 AB590086 BC033095 TSC_hg19_v1_chr6_-_26197515	24733	-	NM_021063|HIST1H2BD|3017|histone cluster 1, H2bd##NM_138720|HIST1H2BD|3017|histone cluster 1, H2bd##AK292712|HIST1H2BD|3017|histone cluster 1, H2bd##BC002842|HIST1H2BD|3017|histone cluster 1, H2bd##AJ223353|HIST1H2BD|3017|histone cluster 1, H2bd##BC096122|HIST1H2BD|3017|histone cluster 1, H2bd##NM_005321|HIST1H1E|3008|histone cluster 1, H1e##BC096168|HIST1H1E|3008|histone cluster 1, H1e##BC096169|HIST1H1E|3008|histone cluster 1, H1e##BC096170|HIST1H1E|3008|histone cluster 1, H1e##BC099632|HIST1H1E|3008|histone cluster 1, H1e##EF065554|HIST1H1E|3008|histone cluster 1, H1e##EF065555|HIST1H1E|3008|histone cluster 1, H1e##AK313681|HIST1H1E|3008|histone cluster 1, H1e##BC101748|HIST1H2BE|8344|histone cluster 1, H2be##BC101750|HIST1H2BE|8344|histone cluster 1, H2be##EU446967|HIST1H2BE|8344|histone cluster 1, H2be##NM_003523|HIST1H2BE|8344|histone cluster 1, H2be##BC128104|HIST1H4D|8360|histone cluster 1, H4d##BC143045|HIST1H4D|8360|histone cluster 1, H4d##NM_003539|HIST1H4D|8360|histone cluster 1, H4d##DQ892795|HIST1H3D|8351|histone cluster 1, H3d##DQ896042|HIST1H3D|8351|histone cluster 1, H3d	0.331716	0.0	denovo_WM_7:-42:0.257
chr6	28340281	28340386	reg1000841.p2	3.719	+	TSC_hg19_v1_chr6_+_28317723 AK091225 AX746861 NM_001242894 NM_001242895 NM_024493 AK122790 AK313532 BC006118	-22607	+	NM_001243241 NM_001243242 NM_001243244 NM_030899	-36182	-	AL833617 NM_001135216 NM_001243243 BC008490	-36416	-	TSC_hg19_v1_chr6_-_28367519 BC041661 AB007886 NM_001163391	27188	-	AK309235 AL833347 AK092117 AX747363 NM_001012455	70920	-	BC133691 BC148315 AY324826 NM_182701	143233	-	AK091225|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242894|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001242895|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_024493|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK122790|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##AK313532|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##BC006118|ZKSCAN3|80317|zinc finger with KRAB and SCAN domains 3##NM_001243241|ZNF323|64288|zinc finger protein 323##NM_001243242|ZNF323|64288|zinc finger protein 323##NM_001243244|ZNF323|64288|zinc finger protein 323##NM_030899|ZNF323|64288|zinc finger protein 323##AL833617|ZNF323|64288|zinc finger protein 323##NM_001135216|ZNF323|64288|zinc finger protein 323##NM_001243243|ZNF323|64288|zinc finger protein 323##BC008490|ZNF323|64288|zinc finger protein 323##BC041661|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AB007886|ZSCAN12|9753|zinc finger and SCAN domain containing 12##NM_001163391|ZSCAN12|9753|zinc finger and SCAN domain containing 12##AK309235|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AL833347|ZSCAN23|222696|zinc finger and SCAN domain containing 23##AK092117|ZSCAN23|222696|zinc finger and SCAN domain containing 23##NM_001012455|ZSCAN23|222696|zinc finger and SCAN domain containing 23##BC133691|GPX6|257202|glutathione peroxidase 6 (olfactory)##BC148315|GPX6|257202|glutathione peroxidase 6 (olfactory)##AY324826|GPX6|257202|glutathione peroxidase 6 (olfactory)##NM_182701|GPX6|257202|glutathione peroxidase 6 (olfactory)	0.0	0.0	
chr7	12618463	12618571	reg1014272.p1	3.719	+	AB067492 NM_001112706 AK290363 AK075123 TSC_hg19_v1_chr7_+_12610346 BC021090 AB590413 DQ892033 DQ895224 AF276507	-8210	+	NM_001135924	-174666	-	TSC_hg19_v1_chr7_-_12443512 AK075525 BC144316 BC144319	-174985	-	AK027778 NM_033128	10630	+	TSC_hg19_v1_chr7_+_12726499 NM_001037164 NM_212460 BC039123 BC001111 BC003027	107969	+	NM_001195396 NM_005738	108393	+	AB067492|SCIN|85477|scinderin##NM_001112706|SCIN|85477|scinderin##AK290363|SCIN|85477|scinderin##AK075123|SCIN|85477|scinderin##BC021090|SCIN|85477|scinderin##DQ892033|SCIN|85477|scinderin##DQ895224|SCIN|85477|scinderin##AF276507|SCIN|85477|scinderin##NM_001135924|VWDE|221806|von Willebrand factor D and EGF domains##AK075525|VWDE|221806|von Willebrand factor D and EGF domains##BC144316|VWDE|221806|von Willebrand factor D and EGF domains##BC144319|VWDE|221806|von Willebrand factor D and EGF domains##AK027778|SCIN|85477|scinderin##NM_033128|SCIN|85477|scinderin##NM_001037164|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_212460|ARL4A|10124|ADP-ribosylation factor-like 4A##BC039123|ARL4A|10124|ADP-ribosylation factor-like 4A##BC001111|ARL4A|10124|ADP-ribosylation factor-like 4A##BC003027|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_001195396|ARL4A|10124|ADP-ribosylation factor-like 4A##NM_005738|ARL4A|10124|ADP-ribosylation factor-like 4A	0.997347	0.0	denovo_WM_7:25:0.985
chr9	98980592	98980673	reg1017164.p2	3.719	+	TSC_hg19_v1_chr9_-_98638262 AF194971 AL389954	-342309	-	NM_001010895 TSC_hg19_v1_chr9_+_98637942 AK129624 AK308409 AL389953	-342691	+	TSC_hg19_v1_chr9_-_98637839 AK092137 AX747374	-342779	-	BT019371 CR541894 CU689848 DQ891812 DQ894995 BC034281 NM_000197 U05659	83777	-	TSC_hg19_v1_chr9_-_99145966 HQ258608 AB106537 AB122077 AK307890 BC100278	165299	-	NM_007001 TSC_hg19_v1_chr9_-_99145994 BC113579	165388	-	AF194971|LINC00476|100128782|long intergenic non-protein coding RNA 476##AL389954|LINC00476|100128782|long intergenic non-protein coding RNA 476##NM_001010895|C9orf102|375748|chromosome 9 open reading frame 102##AK308409|C9orf102|375748|chromosome 9 open reading frame 102##AL389953|C9orf102|375748|chromosome 9 open reading frame 102##AK092137|LINC00476|100128782|long intergenic non-protein coding RNA 476##BT019371|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##CR541894|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##DQ891812|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##DQ894995|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##BC034281|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##NM_000197|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##U05659|HSD17B3|3293|hydroxysteroid (17-beta) dehydrogenase 3##HQ258608|SLC35D2|11046|solute carrier family 35, member D2##AB106537|SLC35D2|11046|solute carrier family 35, member D2##AB122077|SLC35D2|11046|solute carrier family 35, member D2##AK307890|SLC35D2|11046|solute carrier family 35, member D2##BC100278|SLC35D2|11046|solute carrier family 35, member D2##NM_007001|SLC35D2|11046|solute carrier family 35, member D2##BC113579|SLC35D2|11046|solute carrier family 35, member D2	0.0	0.996686	CTCF.p2:-13:0.997
chr10	121916726	121916858	reg1003750.p2	3.718	+	NM_007190 TSC_hg19_v1_chr10_+_121652241 AB019435 AK021846 AK314592 AK001135 AK001135 AK301517 BC063800 BC063800 BC002540 AF116723 BX649119 BX649119 AB384691 CU687818 BT006755	-264603	+	AK023143 TSC_hg19_v1_chr10_-_121632359 BC004183 BC007219 NM_024834	-284452	-	TSC_hg19_v1_chr10_-_121602031 BC000935	-314729	-	NM_001030059 TSC_hg19_v1_chr10_+_122216486 BC101267 BC101268 BC101269 BC122535 BC132787 AK296273 HQ258170 AK310178	299847	+	NM_018117 TSC_hg19_v1_chr10_+_122610771	693936	+	TSC_hg19_v1_chr10_+_122610873 BC040469 AB037772 AK299524 AF320223 AK301761 BC071564 AK315145 AB385454	694103	+	NM_007190|SEC23IP|11196|SEC23 interacting protein##AB019435|SEC23IP|11196|SEC23 interacting protein##AK021846|SEC23IP|11196|SEC23 interacting protein##AK314592|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK001135|SEC23IP|11196|SEC23 interacting protein##AK301517|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC063800|SEC23IP|11196|SEC23 interacting protein##BC002540|SEC23IP|11196|SEC23 interacting protein##AF116723|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BX649119|SEC23IP|11196|SEC23 interacting protein##BT006755|SEC23IP|11196|SEC23 interacting protein##AK023143|MCMBP|79892|minichromosome maintenance complex binding protein##BC004183|MCMBP|79892|minichromosome maintenance complex binding protein##BC007219|MCMBP|79892|minichromosome maintenance complex binding protein##NM_024834|MCMBP|79892|minichromosome maintenance complex binding protein##BC000935|MCMBP|79892|minichromosome maintenance complex binding protein##NM_001030059|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101267|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101268|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC101269|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC122535|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##BC132787|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##HQ258170|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##AK310178|PPAPDC1A|196051|phosphatidic acid phosphatase type 2 domain containing 1A##NM_018117|WDR11|55717|WD repeat domain 11##BC040469|WDR11|55717|WD repeat domain 11##AB037772|WDR11|55717|WD repeat domain 11##AK299524|WDR11|55717|WD repeat domain 11##AF320223|WDR11|55717|WD repeat domain 11##AK301761|WDR11|55717|WD repeat domain 11##BC071564|WDR11|55717|WD repeat domain 11##AK315145|WDR11|55717|WD repeat domain 11	0.99198	0.0	denovo_WM_7:86:0.837
chr11	65893512	65893669	reg1016358.p1	3.718	+	TSC_hg19_v1_chr11_+_65837841 AK096644 NM_018026 AK098336 AY320283 BC010096 BC052577	-55680	+	TSC_hg19_v1_chr11_+_65819834 NM_006842 AK290850 BC010372 BC053577 BX537771 AB463285 BC000401 U41371	-73750	+	AB053232 NM_033036	-76940	-	TSC_hg19_v1_chr11_+_65984213 AB033001	90632	+	TSC_hg19_v1_chr11_+_65988172 BC055288	94605	+	AK293966 TSC_hg19_v1_chr11_+_65998046 BC042909	104385	+	AK096644|PACS1|55690|phosphofurin acidic cluster sorting protein 1##NM_018026|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AK098336|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AY320283|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC010096|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC052577|PACS1|55690|phosphofurin acidic cluster sorting protein 1##NM_006842|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AK290850|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC053577|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BX537771|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##BC000401|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##U41371|SF3B2|10992|splicing factor 3b, subunit 2, 145kDa##AB053232|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##NM_033036|GAL3ST3|89792|galactose-3-O-sulfotransferase 3##AB033001|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC055288|PACS1|55690|phosphofurin acidic cluster sorting protein 1##AK293966|PACS1|55690|phosphofurin acidic cluster sorting protein 1##BC042909|PACS1|55690|phosphofurin acidic cluster sorting protein 1	0.99496	0.0	
chr15	65542339	65542441	reg1016641.p2	3.718	+	BC035776 AF035408 AY358904 AK225652 AK225926 AK313352 TSC_hg19_v1_chr15_-_65503811 NM_003613	-38578	-	TSC_hg19_v1_chr15_-_65477676 AL136922 AK308133 AK292316 AK310614	-64704	-	TSC_hg19_v1_chr15_-_65477471 BC130373 BC136487 BC144166 AJ006267 NM_006660	-64889	-	BC006389 NM_017851 TSC_hg19_v1_chr15_-_65579223 AK000516	36770	-	BC042054 TSC_hg19_v1_chr15_-_65670341 BC067107 NM_004884	127961	-	TSC_hg19_v1_chr15_-_65715258 AB529157	172855	-	BC035776|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AF035408|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AY358904|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225652|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK225926|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AK313352|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##NM_003613|CILP|8483|cartilage intermediate layer protein, nucleotide pyrophosphohydrolase##AL136922|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK308133|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK292316|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AK310614|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC130373|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC136487|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC144166|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##AJ006267|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##NM_006660|CLPX|10845|ClpX caseinolytic peptidase X homolog (E. coli)##BC006389|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##NM_017851|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##AK000516|PARP16|54956|poly (ADP-ribose) polymerase family, member 16##BC042054|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##BC067107|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3##NM_004884|IGDCC3|9543|immunoglobulin superfamily, DCC subclass, member 3	1.947411	0.0	denovo_WM_7:61:0.859	denovo_WM_7:76:0.859
chr17	60120438	60120504	reg1013949.p1	3.718	+	TSC_hg19_v1_chr17_-_60005339 AB033113 AK308307 AK299032 AL136800 NM_020748	-115129	-	BC101472 BC101474 AF360549 TSC_hg19_v1_chr17_-_59940873 NM_032043	-179677	-	CU687600 BC062710 NM_199290 TSC_hg19_v1_chr17_-_59668583	-451909	-	TSC_hg19_v1_chr17_-_60142600 BC140891 AF117754 NM_005121	22156	-	NM_001144933	327107	+	AK098684 NM_173503 BC101752 BC101778	337455	+	AB033113|INTS2|57508|integrator complex subunit 2##AK308307|INTS2|57508|integrator complex subunit 2##AK299032|INTS2|57508|integrator complex subunit 2##AL136800|INTS2|57508|integrator complex subunit 2##NM_020748|INTS2|57508|integrator complex subunit 2##BC101472|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC101474|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##AF360549|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##NM_032043|BRIP1|83990|BRCA1 interacting protein C-terminal helicase 1##BC062710|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##NM_199290|NACA2|342538|nascent polypeptide-associated complex alpha subunit 2##BC140891|MED13|9969|mediator complex subunit 13##AF117754|MED13|9969|mediator complex subunit 13##NM_005121|MED13|9969|mediator complex subunit 13##NM_001144933|EFCAB3|146779|EF-hand calcium binding domain 3##AK098684|EFCAB3|146779|EF-hand calcium binding domain 3##NM_173503|EFCAB3|146779|EF-hand calcium binding domain 3##BC101752|EFCAB3|146779|EF-hand calcium binding domain 3##BC101778|EFCAB3|146779|EF-hand calcium binding domain 3	2.338029	0.0	denovo_WM_7:54:0.583	denovo_WM_7:69:0.425	denovo_WM_7:72:0.445
chr2	214180287	214180432	reg1015894.p1	3.718	+	BC025379 TSC_hg19_v1_chr2_+_214149187 BC067756 NM_001025436 NM_024532 AK095036 BC009614 AK026377 BC100282 AK302351 AF310672 AF426740 CR749477 AF490390 AK310883 CR457359 AL832962	-31202	+	AK124960 NM_001242575	-31431	-	BC028936 NM_001079526	-164027	-	BC146903 BC146911 BC146931 BC146935 BC171841 NM_001080500	1096101	+	AB590656 JF790283 JF790285 JF790287 TSC_hg19_v1_chr2_-_215674408 BC126426 BC126428 AX794378 JF790280 JF790281 JF790282 JF790284 U76638 AK314260 AK301843 JF790286 AK223409 NM_000465	1494000	-	AY033486 NM_015657	1716450	-	BC025379|SPAG16|79582|sperm associated antigen 16##BC067756|SPAG16|79582|sperm associated antigen 16##NM_001025436|SPAG16|79582|sperm associated antigen 16##NM_024532|SPAG16|79582|sperm associated antigen 16##AK095036|SPAG16|79582|sperm associated antigen 16##BC009614|SPAG16|79582|sperm associated antigen 16##AK026377|SPAG16|79582|sperm associated antigen 16##BC100282|SPAG16|79582|sperm associated antigen 16##AK302351|SPAG16|79582|sperm associated antigen 16##AF310672|SPAG16|79582|sperm associated antigen 16##AF426740|SPAG16|79582|sperm associated antigen 16##CR749477|SPAG16|79582|sperm associated antigen 16##AF490390|SPAG16|79582|sperm associated antigen 16##AK310883|SPAG16|79582|sperm associated antigen 16##CR457359|SPAG16|79582|sperm associated antigen 16##AL832962|SPAG16|79582|sperm associated antigen 16##AK124960|LOC100130451|100130451|uncharacterized LOC100130451##NM_001242575|LOC100130451|100130451|uncharacterized LOC100130451##BC028936|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##NM_001079526|IKZF2|22807|IKAROS family zinc finger 2 (Helios)##BC146903|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146911|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146931|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC146935|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##BC171841|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##NM_001080500|VWC2L|402117|von Willebrand factor C domain containing protein 2-like##JF790283|BARD1|580|BRCA1 associated RING domain 1##JF790285|BARD1|580|BRCA1 associated RING domain 1##JF790287|BARD1|580|BRCA1 associated RING domain 1##BC126426|BARD1|580|BRCA1 associated RING domain 1##BC126428|BARD1|580|BRCA1 associated RING domain 1##AX794378|BARD1|580|BRCA1 associated RING domain 1##JF790280|BARD1|580|BRCA1 associated RING domain 1##JF790281|BARD1|580|BRCA1 associated RING domain 1##JF790282|BARD1|580|BRCA1 associated RING domain 1##JF790284|BARD1|580|BRCA1 associated RING domain 1##U76638|BARD1|580|BRCA1 associated RING domain 1##AK314260|BARD1|580|BRCA1 associated RING domain 1##AK301843|BARD1|580|BRCA1 associated RING domain 1##JF790286|BARD1|580|BRCA1 associated RING domain 1##AK223409|BARD1|580|BRCA1 associated RING domain 1##NM_000465|BARD1|580|BRCA1 associated RING domain 1##AY033486|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12##NM_015657|ABCA12|26154|ATP-binding cassette, sub-family A (ABC1), member 12	0.927481	0.0	denovo_WM_7:65:0.609	denovo_WM_7:66:0.297
chr4	15338748	15338853	reg1015960.p1	3.718	+	TSC_hg19_v1_chr4_+_15005451 AY247744 AY255519 BC103939 BC103940 BC103941 BC103942 BC105925	-333339	+	NM_001177381 NM_001177382 NM_001177383 NM_001177384 NM_182485 NM_182646	-334503	+	TSC_hg19_v1_chr4_-_15003933 BC113724 BC113726	-334805	-	BX647781 NM_001135170 AK314802 BC022187 BC024015	2785	+	NM_001135171	37374	+	NM_031911 AF329839	90847	+	AY247744|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##AY255519|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103939|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103940|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103941|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC103942|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC105925|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177381|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177382|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177383|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_001177384|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182485|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##NM_182646|CPEB2|132864|cytoplasmic polyadenylation element binding protein 2##BC113724|LOC441009|441009|uncharacterized LOC441009##BC113726|LOC441009|441009|uncharacterized LOC441009##BX647781|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001135170|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##AK314802|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BC022187|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##BC024015|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_001135171|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##NM_031911|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7##AF329839|C1QTNF7|114905|C1q and tumor necrosis factor related protein 7	0.500169	0.0	
chr7	5595114	5595278	reg1017407.p1	3.718	+	X00351 BC004251 BC001301 BC002409 BC023204 BC013835 X63432 BC014861 BC013380 BC016045 BC014401 TSC_hg19_v1_chr7_-_5570230 AK025375 AK058019 AK098751 AK130062 AK130157 AK222925 AK223032 AK223055 AK225414 AK301372 AK304552 AK308277 AK309997 AK316361 D28354 NM_001101	-24987	-	TSC_hg19_v1_chr7_-_5569235 BC012854 CU680416 EF095209 BC008633 DQ471327 AB385102 DQ890960 DQ894128 K00790	-25950	-	BC113036 TSC_hg19_v1_chr7_-_5568855	-26355	-	NM_003088 AK095254 TSC_hg19_v1_chr7_+_5632441 AK316607	37242	+	BC006304 BC007948 U03057 TSC_hg19_v1_chr7_+_5632493 U09873 BC000521 BC007539 BC007988 DQ891402 DQ894580 CU674252 BT006636	37314	+	AF513717 AF513718 TSC_hg19_v1_chr7_-_5821246	226026	-	X00351|ACTB|60|actin, beta##BC004251|ACTB|60|actin, beta##BC001301|ACTB|60|actin, beta##BC002409|ACTB|60|actin, beta##BC023204|ACTB|60|actin, beta##BC013835|ACTB|60|actin, beta##X63432|ACTB|60|actin, beta##BC014861|ACTB|60|actin, beta##BC013380|ACTB|60|actin, beta##BC016045|ACTB|60|actin, beta##BC014401|ACTB|60|actin, beta##AK025375|ACTB|60|actin, beta##AK058019|ACTB|60|actin, beta##AK098751|ACTB|60|actin, beta##AK130062|ACTB|60|actin, beta##AK130157|ACTB|60|actin, beta##AK222925|ACTB|60|actin, beta##AK223032|ACTB|60|actin, beta##AK223055|ACTB|60|actin, beta##AK225414|ACTB|60|actin, beta##AK301372|ACTB|60|actin, beta##AK304552|ACTB|60|actin, beta##AK308277|ACTB|60|actin, beta##AK309997|ACTB|60|actin, beta##AK316361|ACTB|60|actin, beta##D28354|ACTB|60|actin, beta##NM_001101|ACTB|60|actin, beta##BC012854|ACTB|60|actin, beta##EF095209|ACTB|60|actin, beta##BC008633|ACTB|60|actin, beta##DQ471327|ACTB|60|actin, beta##DQ890960|ACTB|60|actin, beta##DQ894128|ACTB|60|actin, beta##K00790|ACTB|60|actin, beta##BC113036|ACTB|60|actin, beta##NM_003088|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK095254|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AK316607|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC006304|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007948|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U03057|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##U09873|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC000521|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007539|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BC007988|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ891402|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##DQ894580|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##BT006636|FSCN1|6624|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)##AF513717|RNF216|54476|ring finger protein 216##AF513718|RNF216|54476|ring finger protein 216	0.0	0.365236	CTCF.p2:29:0.340
chr8	27236342	27236489	reg1016407.p1	3.718	+	L49207 TSC_hg19_v1_chr8_+_27183068 NM_173175 AB209085	-53338	+	TSC_hg19_v1_chr8_+_27183049 BC042599	-53363	+	NM_173176 TSC_hg19_v1_chr8_+_27183022	-53398	+	AK314787 U62431 NM_000742	100356	-	TSC_hg19_v1_chr8_+_27348693 AK310507 NM_001979 BC011628 AK096089 AK096770 AF233334 AF233335 AF233336 BC007708 BC013874 AK303904 AK308041 AK294065 AB590180 DQ892749 DQ895995 BT006885	112243	+	BC039442 M64722 TSC_hg19_v1_chr8_-_27472218 AY513288 BC010514 BC029972 AK301324 AK313870 AK093399	235790	-	L49207|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##NM_173175|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##AB209085|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##BC042599|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##NM_173176|PTK2B|2185|PTK2B protein tyrosine kinase 2 beta##AK314787|CHRNA2|1135|cholinergic receptor, nicotinic, alpha 2 (neuronal)##U62431|CHRNA2|1135|cholinergic receptor, nicotinic, alpha 2 (neuronal)##NM_000742|CHRNA2|1135|cholinergic receptor, nicotinic, alpha 2 (neuronal)##AK310507|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##NM_001979|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BC011628|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK096089|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK096770|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AF233334|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AF233335|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AF233336|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BC007708|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BC013874|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK303904|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK308041|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##AK294065|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##DQ892749|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##DQ895995|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##BT006885|EPHX2|2053|epoxide hydrolase 2, cytoplasmic##M64722|CLU|1191|clusterin##AY513288|CLU|1191|clusterin##BC010514|CLU|1191|clusterin##BC029972|CLU|1191|clusterin##AK301324|CLU|1191|clusterin##AK313870|CLU|1191|clusterin##AK093399|CLU|1191|clusterin	0.0	0.0	
chr9	68301948	68302128	reg1009697.p1	3.718	+	AL136793 NM_001012419 NM_032250 BC140809 BC171793 AB462947 AM393131 BC146681	-375222	+	TSC_hg19_v1_chr9_+_66553257 BC000869 BC040170	-1748763	+	BC025967 TSC_hg19_v1_chr9_-_66494213 AB593083	-1807842	-	TSC_hg19_v1_chr9_+_68726468 AK311167	424464	+	TSC_hg19_v1_chr9_+_69065493 AK311167	763500	+	NM_001085476	900165	-	AL136793|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##NM_001012419|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##NM_032250|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC140809|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##BC171793|ANKRD20A3|441425|ankyrin repeat domain 20 family, member A3##AM393131|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC146681|ANKRD20A1|84210|ankyrin repeat domain 20 family, member A1##BC000869|MGC21881|389741|uncharacterized locus MGC21881##BC040170|MGC21881|389741|uncharacterized locus MGC21881##AB593083|LOC100132249|100132249|uncharacterized LOC100132249##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##AK311167|LOC100132352|100132352|FSHD region gene 1 pseudogene##NM_001085476|FOXD4L6|653404|forkhead box D4-like 6	0.411443	0.0	
chrX	56796254	56796334	reg1003297.p1	3.718	+	TSC_hg19_v1_chrX_+_56755698 BX537532 BC048131 BC053960 BC053962 BC062451	-40603	+	TSC_hg19_v1_chrX_+_56590029 NM_013444 BC069237 AK297252 AK302885 AF189009	-206243	+	TSC_hg19_v1_chrX_+_56258818 NM_007250 BC063276 AK296156 NM_001159296 BX641066	-537384	+	TSC_hg19_v1_chrX_-_57021949 BC032490 AK304047 BC018073 AL832091 NM_001010862 AK123122	225677	-	AF356353 TSC_hg19_v1_chrX_-_57147913 BC071974 BC000044 AK311172 NM_001006681 NM_001006682 NM_001006683	351634	-	BC071694 NM_019003	367763	-	BX537532|LOC550643|550643|uncharacterized LOC550643##BC048131|LOC550643|550643|uncharacterized LOC550643##BC053960|LOC550643|550643|uncharacterized LOC550643##BC053962|LOC550643|550643|uncharacterized LOC550643##BC062451|LOC550643|550643|uncharacterized LOC550643##NM_013444|UBQLN2|29978|ubiquilin 2##BC069237|UBQLN2|29978|ubiquilin 2##AK297252|UBQLN2|29978|ubiquilin 2##AK302885|UBQLN2|29978|ubiquilin 2##AF189009|UBQLN2|29978|ubiquilin 2##NM_007250|KLF8|11279|Kruppel-like factor 8##BC063276|KLF8|11279|Kruppel-like factor 8##AK296156|KLF8|11279|Kruppel-like factor 8##NM_001159296|KLF8|11279|Kruppel-like factor 8##BX641066|KLF8|11279|Kruppel-like factor 8##BC032490|SPIN3|169981|spindlin family, member 3##AK304047|SPIN3|169981|spindlin family, member 3##BC018073|SPIN3|169981|spindlin family, member 3##AL832091|SPIN3|169981|spindlin family, member 3##NM_001010862|SPIN3|169981|spindlin family, member 3##AK123122|SPIN3|169981|spindlin family, member 3##AF356353|SPIN2B|474343|spindlin family, member 2B##BC071974|SPIN2B|474343|spindlin family, member 2B##BC000044|SPIN2B|474343|spindlin family, member 2B##NM_001006681|SPIN2B|474343|spindlin family, member 2B##NM_001006682|SPIN2B|474343|spindlin family, member 2B##NM_001006683|SPIN2B|474343|spindlin family, member 2B##BC071694|SPIN2A|54466|spindlin family, member 2A##NM_019003|SPIN2A|54466|spindlin family, member 2A	0.0	0.0	
chr1	214620226	214620306	reg1018111.p1	3.717	+	TSC_hg19_v1_chr1_+_214454550 BC068511 BC049367 BC094747 BC057793 NM_020197 AF226053 BC098133 BC098276 BC098305 BC098335 BC028104 AK313868 AB590916 BC039890	-165829	+	BC024201 NM_002763	-458407	+	AK298182 TSC_hg19_v1_chr1_+_214161296 U44060	-458977	+	X82676 TSC_hg19_v1_chr1_-_214724620 BC017300 AK090596	104341	-	TSC_hg19_v1_chr1_-_214724946 AK298120 BX538306 AK291641	104633	-	TSC_hg19_v1_chr1_-_214724977 NM_005401	104732	-	BC068511|SMYD2|56950|SET and MYND domain containing 2##BC049367|SMYD2|56950|SET and MYND domain containing 2##BC094747|SMYD2|56950|SET and MYND domain containing 2##BC057793|SMYD2|56950|SET and MYND domain containing 2##NM_020197|SMYD2|56950|SET and MYND domain containing 2##AF226053|SMYD2|56950|SET and MYND domain containing 2##BC098133|SMYD2|56950|SET and MYND domain containing 2##BC098276|SMYD2|56950|SET and MYND domain containing 2##BC098305|SMYD2|56950|SET and MYND domain containing 2##BC098335|SMYD2|56950|SET and MYND domain containing 2##BC028104|SMYD2|56950|SET and MYND domain containing 2##AK313868|SMYD2|56950|SET and MYND domain containing 2##BC039890|SMYD2|56950|SET and MYND domain containing 2##BC024201|PROX1|5629|prospero homeobox 1##NM_002763|PROX1|5629|prospero homeobox 1##AK298182|PROX1|5629|prospero homeobox 1##U44060|PROX1|5629|prospero homeobox 1##X82676|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##BC017300|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK090596|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK298120|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##AK291641|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14##NM_005401|PTPN14|5784|protein tyrosine phosphatase, non-receptor type 14	0.0	0.0	
chr12	98884856	98884998	reg1013526.p1	3.717	+	BC027605 NM_001135175	-1583684	+	AK290058 NM_001135176 NM_001135177 NM_152905 TSC_hg19_v1_chr12_+_97301000 BC026168 AK303656 AK315821 AL832466 BC020799 AK093221 AX747997	-1583896	+	TSC_hg19_v1_chr12_-_96794341 AK290011 AK315214 NM_001170464 NM_002595	-2090610	-	TSC_hg19_v1_chr12_-_98897622 AK126817	12700	-	TSC_hg19_v1_chr12_+_98909388 NM_001032283 NM_001032284 NM_003276 BC050383 BC053675	24440	+	TSC_hg19_v1_chr12_+_98909409 U09087 U09088 AF070631	24480	+	BC027605|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135175|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290058|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135176|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_001135177|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##NM_152905|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC026168|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK303656|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK315821|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AL832466|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##BC020799|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK093221|NEDD1|121441|neural precursor cell expressed, developmentally down-regulated 1##AK290011|CDK17|5128|cyclin-dependent kinase 17##AK315214|CDK17|5128|cyclin-dependent kinase 17##NM_001170464|CDK17|5128|cyclin-dependent kinase 17##NM_002595|CDK17|5128|cyclin-dependent kinase 17##AK126817|LOC643770|643770|uncharacterized LOC643770##NM_001032283|TMPO|7112|thymopoietin##NM_001032284|TMPO|7112|thymopoietin##NM_003276|TMPO|7112|thymopoietin##BC050383|TMPO|7112|thymopoietin##BC053675|TMPO|7112|thymopoietin##U09087|TMPO|7112|thymopoietin##U09088|TMPO|7112|thymopoietin##AF070631|TMPO|7112|thymopoietin	0.0	0.94083	CTCF.p2:17:0.941
chr19	42592682	42592783	reg1019170.p1	3.717	+	TSC_hg19_v1_chr19_+_42580336 AF447880 AK027895 BC001184	-12366	+	TSC_hg19_v1_chr19_+_42580286 NM_022752	-12450	+	S40369 AJ249209 BC131717 NM_002088	-22794	-	M36718 X13809 BT007438 AB590941 TSC_hg19_v1_chr19_-_42636564 BC006101 M36653 NM_001207025 NM_001207026 NM_001247994 NM_002698 X53468	43859	-	TSC_hg19_v1_chr19_-_42721830 BC027930 NM_133328 AY125488 BC013372 AK307895 AK130203 AK075328	129107	-	TSC_hg19_v1_chr19_+_42724463 AK298895 AB075831 NM_133444	131732	+	AF447880|ZNF574|64763|zinc finger protein 574##AK027895|ZNF574|64763|zinc finger protein 574##BC001184|ZNF574|64763|zinc finger protein 574##NM_022752|ZNF574|64763|zinc finger protein 574##S40369|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##AJ249209|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##BC131717|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##NM_002088|GRIK5|2901|glutamate receptor, ionotropic, kainate 5##M36718|POU2F2|5452|POU class 2 homeobox 2##X13809|POU2F2|5452|POU class 2 homeobox 2##BT007438|POU2F2|5452|POU class 2 homeobox 2##BC006101|POU2F2|5452|POU class 2 homeobox 2##M36653|POU2F2|5452|POU class 2 homeobox 2##NM_001207025|POU2F2|5452|POU class 2 homeobox 2##NM_001207026|POU2F2|5452|POU class 2 homeobox 2##NM_001247994|POU2F2|5452|POU class 2 homeobox 2##NM_002698|POU2F2|5452|POU class 2 homeobox 2##X53468|POU2F2|5452|POU class 2 homeobox 2##BC027930|DEDD2|162989|death effector domain containing 2##NM_133328|DEDD2|162989|death effector domain containing 2##AY125488|DEDD2|162989|death effector domain containing 2##BC013372|DEDD2|162989|death effector domain containing 2##AK307895|DEDD2|162989|death effector domain containing 2##AK130203|DEDD2|162989|death effector domain containing 2##AK075328|DEDD2|162989|death effector domain containing 2##AK298895|ZNF526|116115|zinc finger protein 526##AB075831|ZNF526|116115|zinc finger protein 526##NM_133444|ZNF526|116115|zinc finger protein 526	0.997658	0.0	denovo_WM_7:-71:0.234	denovo_WM_7:-72:0.234	denovo_WM_7:-73:0.234	denovo_WM_7:-74:0.234
chr20	24935925	24936058	reg1005872.p2	3.717	+	TSC_hg19_v1_chr20_+_24929907 AF031824 BC015507 AB015225 CU677327 BT009825 AF036342 CR541860 CR541878	-5969	+	TSC_hg19_v1_chr20_+_24929865 NM_003650	-6128	+	TSC_hg19_v1_chr20_+_24450295 BC030637	-485689	+	TSC_hg19_v1_chr20_-_24973355 CU678464 BC003501	37339	-	TSC_hg19_v1_chr20_-_24973366 AB033767 AK291129	37390	-	TSC_hg19_v1_chr20_-_24973410 NM_020531 AK301959	37496	-	AF031824|CST7|8530|cystatin F (leukocystatin)##BC015507|CST7|8530|cystatin F (leukocystatin)##AB015225|CST7|8530|cystatin F (leukocystatin)##BT009825|CST7|8530|cystatin F (leukocystatin)##AF036342|CST7|8530|cystatin F (leukocystatin)##CR541860|CST7|8530|cystatin F (leukocystatin)##CR541878|CST7|8530|cystatin F (leukocystatin)##NM_003650|CST7|8530|cystatin F (leukocystatin)##BC030637|SYNDIG1|79953|synapse differentiation inducing 1##BC003501|C20orf3|57136|chromosome 20 open reading frame 3##AB033767|C20orf3|57136|chromosome 20 open reading frame 3##AK291129|C20orf3|57136|chromosome 20 open reading frame 3##NM_020531|C20orf3|57136|chromosome 20 open reading frame 3##AK301959|C20orf3|57136|chromosome 20 open reading frame 3	0.989675	0.0	
chr20	33891753	33891872	reg1015078.p1	3.717	+	BC113483 AK091116 AX746786 NM_178468	-11599	-	TSC_hg19_v1_chr20_-_33872580 BC001119 AF047433 NM_002212 NM_181466 AK314969	-19216	-	NM_181468 TSC_hg19_v1_chr20_-_33872566 AB062289 BC019305 Y11435 AK296076 BC095465 BC011845	-19275	-	BC008871 AB528278 AM392884 AM393853 TSC_hg19_v1_chr20_-_33999777 AK001712 AK022650 AK022742 AK225557 AK293516 AK300130 AK302133 AK308819 BC105791	107957	-	TSC_hg19_v1_chr20_-_33999791 AK225281 AK293149 BC119013 BC122862 AY050659 NM_001184977 NM_018244 NM_199487	108050	-	AB593125 U13660 NM_000557	134178	-	BC113483|FAM83C|128876|family with sequence similarity 83, member C##AK091116|FAM83C|128876|family with sequence similarity 83, member C##NM_178468|FAM83C|128876|family with sequence similarity 83, member C##BC001119|EIF6|3692|eukaryotic translation initiation factor 6##AF047433|EIF6|3692|eukaryotic translation initiation factor 6##NM_002212|EIF6|3692|eukaryotic translation initiation factor 6##NM_181466|EIF6|3692|eukaryotic translation initiation factor 6##AK314969|EIF6|3692|eukaryotic translation initiation factor 6##NM_181468|EIF6|3692|eukaryotic translation initiation factor 6##AB062289|EIF6|3692|eukaryotic translation initiation factor 6##BC019305|EIF6|3692|eukaryotic translation initiation factor 6##Y11435|EIF6|3692|eukaryotic translation initiation factor 6##AK296076|EIF6|3692|eukaryotic translation initiation factor 6##BC095465|EIF6|3692|eukaryotic translation initiation factor 6##BC011845|EIF6|3692|eukaryotic translation initiation factor 6##BC008871|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM392884|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AM393853|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK001712|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022650|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK022742|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225557|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293516|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK300130|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK302133|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK308819|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC105791|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK225281|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AK293149|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC119013|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##BC122862|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AY050659|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_001184977|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_018244|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##NM_199487|UQCC|55245|ubiquinol-cytochrome c reductase complex chaperone##AB593125|GDF5|8200|growth differentiation factor 5##U13660|GDF5|8200|growth differentiation factor 5##NM_000557|GDF5|8200|growth differentiation factor 5	0.0	0.996987	CTCF.p2:-6:0.997
chr22	36781160	36781226	reg1014988.p2	3.717	+	D11393 TSC_hg19_v1_chr22_-_36697021	-84179	-	BC011915 TSC_hg19_v1_chr22_-_36681760	-99430	-	TSC_hg19_v1_chr22_+_36649178 AF305224 AK303919 AK313752 AK298053 BC113867 BC114475 BC127186 BC143038 BC143039 BC017331 AK296099	-132004	+	TSC_hg19_v1_chr22_-_36783906 AB290175 CR456526	2693	-	TSC_hg19_v1_chr22_-_36783943 M81105	2759	-	AK131080 TSC_hg19_v1_chr22_-_36783982 BC049849	2786	-	D11393|MYH9|4627|myosin, heavy chain 9, non-muscle##BC011915|MYH9|4627|myosin, heavy chain 9, non-muscle##AF305224|APOL1|8542|apolipoprotein L, 1##AK303919|APOL1|8542|apolipoprotein L, 1##AK313752|APOL1|8542|apolipoprotein L, 1##AK298053|APOL1|8542|apolipoprotein L, 1##BC113867|APOL1|8542|apolipoprotein L, 1##BC114475|APOL1|8542|apolipoprotein L, 1##BC127186|APOL1|8542|apolipoprotein L, 1##BC143038|APOL1|8542|apolipoprotein L, 1##BC143039|APOL1|8542|apolipoprotein L, 1##BC017331|APOL1|8542|apolipoprotein L, 1##AK296099|APOL1|8542|apolipoprotein L, 1##AB290175|MYH9|4627|myosin, heavy chain 9, non-muscle##CR456526|MYH9|4627|myosin, heavy chain 9, non-muscle##M81105|MYH9|4627|myosin, heavy chain 9, non-muscle##AK131080|MYH9|4627|myosin, heavy chain 9, non-muscle##BC049849|MYH9|4627|myosin, heavy chain 9, non-muscle	0.935014	0.0	denovo_WM_7:19:0.264	denovo_WM_7:21:0.495
chr3	79058175	79058257	reg1010355.p2	3.717	+	TSC_hg19_v1_chr3_-_78666943 AK025535	-391231	-	TSC_hg19_v1_chr3_+_77089260 DQ533874 NM_002942	-1968936	+	TSC_hg19_v1_chr3_-_75834698 AK123776	-3223514	-	TSC_hg19_v1_chr3_-_79068579 NM_001145845 NM_133631	10371	-	NM_002941	758842	-	TSC_hg19_v1_chr3_-_81810692 EU176342 L07956	2752481	-	AK025535|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##DQ533874|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##NM_002942|ROBO2|6092|roundabout, axon guidance receptor, homolog 2 (Drosophila)##AK123776|ZNF717|100131827|zinc finger protein 717##NM_001145845|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_133631|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##NM_002941|ROBO1|6091|roundabout, axon guidance receptor, homolog 1 (Drosophila)##EU176342|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1##L07956|GBE1|2632|glucan (1,4-alpha-), branching enzyme 1	1.022694	0.0	
chr4	79583088	79583169	reg1013016.p1	3.717	+	TSC_hg19_v1_chr4_+_79472911 BC000871 AK313945	-110220	+	NM_005139 TSC_hg19_v1_chr4_+_79472790	-110358	+	BC006366 TSC_hg19_v1_chr4_-_79103287	-479843	-	TSC_hg19_v1_chr4_+_79697501 AL137661	114355	+	NM_017593 NM_198892 TSC_hg19_v1_chr4_+_79697532	114408	+	TSC_hg19_v1_chr4_+_79697552 AK292147 BC036021 DQ890994	114495	+	BC000871|ANXA3|306|annexin A3##AK313945|ANXA3|306|annexin A3##NM_005139|ANXA3|306|annexin A3##AL137661|BMP2K|55589|BMP2 inducible kinase##NM_017593|BMP2K|55589|BMP2 inducible kinase##NM_198892|BMP2K|55589|BMP2 inducible kinase##AK292147|BMP2K|55589|BMP2 inducible kinase##BC036021|BMP2K|55589|BMP2 inducible kinase##DQ890994|BMP2K|55589|BMP2 inducible kinase	0.994259	0.0	denovo_WM_7:1:0.302	denovo_WM_7:2:0.302	denovo_WM_7:3:0.302
chr17	25800793	25800908	reg1018970.p1	3.716	+	BC035488 BC042106 NM_014238	-1821	+	TSC_hg19_v1_chr17_+_25621147 AF069313 AF240696 BC021110 AF112205 AF106683 AF072880 AB463346 AM393409 AM393665 CU676828	-179569	+	AL110243 NM_015626 NM_134265 AK307114 TSC_hg19_v1_chr17_+_25621139 AL110269 AK074917 AK294516 AK300262 BC048007 AK222576	-179728	+	TSC_hg19_v1_chr17_+_25958181 NM_002308 NM_009587	157318	+	TSC_hg19_v1_chr17_+_25958213 AB006782 AK223232	157353	+	TSC_hg19_v1_chr17_+_25958238 AB005894 AK301624 BC110340 AK296031	157378	+	BC035488|KSR1|8844|kinase suppressor of ras 1##BC042106|KSR1|8844|kinase suppressor of ras 1##NM_014238|KSR1|8844|kinase suppressor of ras 1##AF069313|WSB1|26118|WD repeat and SOCS box containing 1##AF240696|WSB1|26118|WD repeat and SOCS box containing 1##BC021110|WSB1|26118|WD repeat and SOCS box containing 1##AF112205|WSB1|26118|WD repeat and SOCS box containing 1##AF106683|WSB1|26118|WD repeat and SOCS box containing 1##AF072880|WSB1|26118|WD repeat and SOCS box containing 1##AM393409|WSB1|26118|WD repeat and SOCS box containing 1##AM393665|WSB1|26118|WD repeat and SOCS box containing 1##AL110243|WSB1|26118|WD repeat and SOCS box containing 1##NM_015626|WSB1|26118|WD repeat and SOCS box containing 1##NM_134265|WSB1|26118|WD repeat and SOCS box containing 1##AK307114|WSB1|26118|WD repeat and SOCS box containing 1##AL110269|WSB1|26118|WD repeat and SOCS box containing 1##AK074917|WSB1|26118|WD repeat and SOCS box containing 1##AK294516|WSB1|26118|WD repeat and SOCS box containing 1##AK300262|WSB1|26118|WD repeat and SOCS box containing 1##BC048007|WSB1|26118|WD repeat and SOCS box containing 1##AK222576|WSB1|26118|WD repeat and SOCS box containing 1##NM_002308|LGALS9|3965|lectin, galactoside-binding, soluble, 9##NM_009587|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB006782|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK223232|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AB005894|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK301624|LGALS9|3965|lectin, galactoside-binding, soluble, 9##BC110340|LGALS9|3965|lectin, galactoside-binding, soluble, 9##AK296031|LGALS9|3965|lectin, galactoside-binding, soluble, 9	0.0	0.0	
chr17	28049525	28049613	reg1009024.p1	3.716	+	BC028205 TSC_hg19_v1_chr17_-_27949878 AL833952	-99718	-	AK096431 NM_032854	-101177	-	TSC_hg19_v1_chr17_+_27920483 NM_152345	-129067	+	TSC_hg19_v1_chr17_-_28088446 BC011636	38889	-	AK302745 AK303060 NM_001145053 AK299608	207327	+	AB072358 AB099290 NM_033389 AK296413 AK308887 TSC_hg19_v1_chr17_-_28257199 BC008941 BC068223	207564	-	BC028205|CORO6|84940|coronin 6##AL833952|CORO6|84940|coronin 6##AK096431|CORO6|84940|coronin 6##NM_032854|CORO6|84940|coronin 6##NM_152345|ANKRD13B|124930|ankyrin repeat domain 13B##BC011636|SSH2|85464|slingshot homolog 2 (Drosophila)##AK302745|EFCAB5|374786|EF-hand calcium binding domain 5##AK303060|EFCAB5|374786|EF-hand calcium binding domain 5##NM_001145053|EFCAB5|374786|EF-hand calcium binding domain 5##AK299608|EFCAB5|374786|EF-hand calcium binding domain 5##AB072358|SSH2|85464|slingshot homolog 2 (Drosophila)##AB099290|SSH2|85464|slingshot homolog 2 (Drosophila)##NM_033389|SSH2|85464|slingshot homolog 2 (Drosophila)##AK296413|SSH2|85464|slingshot homolog 2 (Drosophila)##AK308887|SSH2|85464|slingshot homolog 2 (Drosophila)##BC008941|SSH2|85464|slingshot homolog 2 (Drosophila)##BC068223|SSH2|85464|slingshot homolog 2 (Drosophila)	0.0	0.0	
chr17	33862395	33862509	reg1015842.p2	3.716	+	NM_001195790	-47695	-	TSC_hg19_v1_chr17_-_33775787 CR749630 AK056514 AL832726 AK122750 NM_144682	-86641	-	AK001122 BC035605 NM_018042	-102922	-	BC140847 BC157877 BC157879 NM_001129820	22655	-	BC031085 AK312635 BC015751 U91521 NM_000286	43153	-	TSC_hg19_v1_chr17_+_33914281 NM_001030006 NM_001282 M34175 AK295667	51838	+	NM_001195790|SLFN12L|100506736|schlafen family member 12-like##CR749630|SLFN13|146857|schlafen family member 13##AK056514|SLFN13|146857|schlafen family member 13##AL832726|SLFN13|146857|schlafen family member 13##AK122750|SLFN13|146857|schlafen family member 13##NM_144682|SLFN13|146857|schlafen family member 13##AK001122|SLFN12|55106|schlafen family member 12##BC035605|SLFN12|55106|schlafen family member 12##NM_018042|SLFN12|55106|schlafen family member 12##BC140847|SLFN14|342618|schlafen family member 14##BC157877|SLFN14|342618|schlafen family member 14##BC157879|SLFN14|342618|schlafen family member 14##NM_001129820|SLFN14|342618|schlafen family member 14##BC031085|PEX12|5193|peroxisomal biogenesis factor 12##AK312635|PEX12|5193|peroxisomal biogenesis factor 12##BC015751|PEX12|5193|peroxisomal biogenesis factor 12##U91521|PEX12|5193|peroxisomal biogenesis factor 12##NM_000286|PEX12|5193|peroxisomal biogenesis factor 12##NM_001030006|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##NM_001282|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##M34175|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit##AK295667|AP2B1|163|adaptor-related protein complex 2, beta 1 subunit	1.985613	0.0	denovo_WM_7:62:0.814	denovo_WM_7:-68:0.252
chr20	52371132	52371255	reg1012888.p1	3.716	+	TSC_hg19_v1_chr20_-_52210810 AK290350	-160394	-	AF041259 NM_006526	-171558	-	AK302570 NM_001193421	-569372	+	BC126346 BC126348 AK304213 TSC_hg19_v1_chr20_-_52687087 AK225656 AK308384 AF041260 BC024044	315869	-	AK315220 NM_003657	316110	-	L13286 NM_000782 NM_001128915 TSC_hg19_v1_chr20_-_52790526	419327	-	AK290350|ZNF217|7764|zinc finger protein 217##AF041259|ZNF217|7764|zinc finger protein 217##NM_006526|ZNF217|7764|zinc finger protein 217##AK302570|TSHZ2|128553|teashirt zinc finger homeobox 2##NM_001193421|TSHZ2|128553|teashirt zinc finger homeobox 2##BC126346|BCAS1|8537|breast carcinoma amplified sequence 1##BC126348|BCAS1|8537|breast carcinoma amplified sequence 1##AK304213|BCAS1|8537|breast carcinoma amplified sequence 1##AK225656|BCAS1|8537|breast carcinoma amplified sequence 1##AK308384|BCAS1|8537|breast carcinoma amplified sequence 1##AF041260|BCAS1|8537|breast carcinoma amplified sequence 1##BC024044|BCAS1|8537|breast carcinoma amplified sequence 1##AK315220|BCAS1|8537|breast carcinoma amplified sequence 1##NM_003657|BCAS1|8537|breast carcinoma amplified sequence 1##L13286|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_000782|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1##NM_001128915|CYP24A1|1591|cytochrome P450, family 24, subfamily A, polypeptide 1	0.0	0.0	
chr3	133968897	133969074	reg1004904.p2	3.716	+	BC051347 TSC_hg19_v1_chr3_-_133748836 NM_005630	-220112	-	U70867 BC041140 AK303550 AK309561 TSC_hg19_v1_chr3_-_133748770	-220235	-	AK025826 AK225383 BC051274 BC064502 BC082257 NM_025041	-320399	-	TSC_hg19_v1_chr3_-_133969397 AB527382	479	-	TSC_hg19_v1_chr3_-_133969650 NM_001005861 NM_002958 X69970 X96588	641	-	TSC_hg19_v1_chr3_-_134093290 AK223598 AK001343 AB023206 AK291616 NM_016201	124380	-	BC051347|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##NM_005630|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##U70867|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##BC041140|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##AK303550|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##AK309561|SLCO2A1|6578|solute carrier organic anion transporter family, member 2A1##AK025826|C3orf36|80111|chromosome 3 open reading frame 36##AK225383|C3orf36|80111|chromosome 3 open reading frame 36##BC051274|C3orf36|80111|chromosome 3 open reading frame 36##BC064502|C3orf36|80111|chromosome 3 open reading frame 36##BC082257|C3orf36|80111|chromosome 3 open reading frame 36##NM_025041|C3orf36|80111|chromosome 3 open reading frame 36##NM_001005861|RYK|6259|RYK receptor-like tyrosine kinase##NM_002958|RYK|6259|RYK receptor-like tyrosine kinase##X69970|RYK|6259|RYK receptor-like tyrosine kinase##X96588|RYK|6259|RYK receptor-like tyrosine kinase##AK223598|AMOTL2|51421|angiomotin like 2##AK001343|AMOTL2|51421|angiomotin like 2##AB023206|AMOTL2|51421|angiomotin like 2##AK291616|AMOTL2|51421|angiomotin like 2##NM_016201|AMOTL2|51421|angiomotin like 2	0.0	0.0	
chr4	84031702	84031827	reg1013699.p2	3.716	+	BC012205 NM_001130716	-761	-	NM_016129 AK001148 TSC_hg19_v1_chr4_+_83956368 AK024005 BC093007 AK223178 BC004302 BC009292 AB587420 AF100757 AK001210	-75440	+	TSC_hg19_v1_chr4_-_83934095 AK292769 NM_001115007	-97736	-	AF208846 EU570985 EU570986 TSC_hg19_v1_chr4_-_84035890 AJ422147	4127	-	TSC_hg19_v1_chr4_-_84035912 AK000140 NM_001130715 NM_016619	4163	-	TSC_hg19_v1_chr4_-_84205924 DQ895928 EU176380 BC008804 AK023076	174151	-	BC012205|PLAC8|51316|placenta-specific 8##NM_001130716|PLAC8|51316|placenta-specific 8##NM_016129|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001148|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK024005|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC093007|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK223178|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC004302|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##BC009292|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AF100757|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK001210|COPS4|51138|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)##AK292769|LIN54|132660|lin-54 homolog (C. elegans)##NM_001115007|LIN54|132660|lin-54 homolog (C. elegans)##AF208846|PLAC8|51316|placenta-specific 8##EU570985|PLAC8|51316|placenta-specific 8##EU570986|PLAC8|51316|placenta-specific 8##AJ422147|PLAC8|51316|placenta-specific 8##AK000140|PLAC8|51316|placenta-specific 8##NM_001130715|PLAC8|51316|placenta-specific 8##NM_016619|PLAC8|51316|placenta-specific 8##DQ895928|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##EU176380|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##BC008804|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)##AK023076|COQ2|27235|coenzyme Q2 homolog, prenyltransferase (yeast)	0.0	0.0	
chr10	29948079	29948210	reg1015247.p1	3.715	+	AF109135 NM_021738 TSC_hg19_v1_chr10_-_29923901	-24237	-	TSC_hg19_v1_chr10_-_29923841 BC057241 BC070247	-24283	-	BX648589 TSC_hg19_v1_chr10_-_29754623	-193593	-	TSC_hg19_v1_chr10_-_30024866 AF051850 NM_003174	76620	-	TSC_hg19_v1_chr10_-_30025865 AK307640	77762	-	TSC_hg19_v1_chr10_-_30316350 BC047548	368287	-	AF109135|SVIL|6840|supervillin##NM_021738|SVIL|6840|supervillin##BX648589|SVIL|6840|supervillin##AF051850|SVIL|6840|supervillin##NM_003174|SVIL|6840|supervillin##AK307640|SVIL|6840|supervillin##BC047548|KIAA1462|57608|KIAA1462	0.0	0.0	
chr14	39739315	39739433	reg1011221.p2	3.715	+	TSC_hg19_v1_chr14_+_39736592 BC039017 AK315254 BC029513 BC051363 U73682	-2801	+	TSC_hg19_v1_chr14_+_39736287 NM_001247989 NM_001247990 NM_005930 NM_203355 U94780 BC064355 AF338234	-3007	+	TSC_hg19_v1_chr14_+_39735882 AK055791	-3495	+	TSC_hg19_v1_chr14_-_39901371 BX248772	161983	-	BC053537 BC068566 BC030611 NM_203301	162287	-	NM_152447 AK096627	2337393	+	BC039017|CTAGE5|4253|CTAGE family, member 5##AK315254|CTAGE5|4253|CTAGE family, member 5##BC029513|CTAGE5|4253|CTAGE family, member 5##BC051363|CTAGE5|4253|CTAGE family, member 5##U73682|CTAGE5|4253|CTAGE family, member 5##NM_001247989|CTAGE5|4253|CTAGE family, member 5##NM_001247990|CTAGE5|4253|CTAGE family, member 5##NM_005930|CTAGE5|4253|CTAGE family, member 5##NM_203355|CTAGE5|4253|CTAGE family, member 5##U94780|CTAGE5|4253|CTAGE family, member 5##BC064355|CTAGE5|4253|CTAGE family, member 5##AF338234|CTAGE5|4253|CTAGE family, member 5##AK055791|CTAGE5|4253|CTAGE family, member 5##BX248772|FBXO33|254170|F-box protein 33##BC053537|FBXO33|254170|F-box protein 33##BC068566|FBXO33|254170|F-box protein 33##BC030611|FBXO33|254170|F-box protein 33##NM_203301|FBXO33|254170|F-box protein 33##NM_152447|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5##AK096627|LRFN5|145581|leucine rich repeat and fibronectin type III domain containing 5	1.865485	0.0	denovo_WM_7:-27:0.869
chr20	42980558	42980670	reg1012452.p2	3.715	+	NM_178491	-14989	+	TSC_hg19_v1_chr20_-_42939843 BC029662 BC130446 BC136640 NM_001080472	-40796	-	AF123765 BC009014 TSC_hg19_v1_chr20_+_42875960 CU679231 AK297348	-104638	+	TSC_hg19_v1_chr20_+_42984088 AK096973	3479	+	TSC_hg19_v1_chr20_+_42984338 AY680696 AY680697 AY680698 NM_001030003 NM_001030004 NM_175914 FJ608822 HQ692868	3777	+	TSC_hg19_v1_chr20_-_43024303 AF143870	43710	-	NM_178491|R3HDML|140902|R3H domain containing-like##BC029662|FITM2|128486|fat storage-inducing transmembrane protein 2##BC130446|FITM2|128486|fat storage-inducing transmembrane protein 2##BC136640|FITM2|128486|fat storage-inducing transmembrane protein 2##NM_001080472|FITM2|128486|fat storage-inducing transmembrane protein 2##AF123765|GDAP1L1|78997|ganglioside-induced differentiation-associated protein 1-like 1##BC009014|GDAP1L1|78997|ganglioside-induced differentiation-associated protein 1-like 1##AK297348|GDAP1L1|78997|ganglioside-induced differentiation-associated protein 1-like 1##AK096973|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680696|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680697|HNF4A|3172|hepatocyte nuclear factor 4, alpha##AY680698|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_001030003|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_001030004|HNF4A|3172|hepatocyte nuclear factor 4, alpha##NM_175914|HNF4A|3172|hepatocyte nuclear factor 4, alpha##FJ608822|HNF4A|3172|hepatocyte nuclear factor 4, alpha##HQ692868|HNF4A|3172|hepatocyte nuclear factor 4, alpha	0.0	0.0	
chr20	44002660	44002774	reg1015641.p1	3.715	+	TSC_hg19_v1_chr20_+_43992151 EU832322 EU832407	-10576	+	NM_001099791 NM_033542 TSC_hg19_v1_chr20_+_43991822 AK075264 AK172738 AX775821 BC048286 BC023562 AL591714 AK309429	-10900	+	NM_001197129	-12141	+	CU691416 BC036785 NM_014477 AB017802	4237	-	NM_001197139 NM_001048221 NM_001048222 TSC_hg19_v1_chr20_+_44034950 NM_001197140 AF220191 NM_018478	32120	+	TSC_hg19_v1_chr20_+_44035227 NM_001048223 NM_001048224 AJ276469 BC001105 BC012818 AL591565 AK000531	32604	+	EU832322|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##EU832407|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##NM_001099791|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##NM_033542|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##AK075264|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##AK172738|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##BC048286|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##BC023562|SYS1-DBNDD2|767557|SYS1-DBNDD2 readthrough##AL591714|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##AK309429|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##NM_001197129|SYS1|90196|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)##BC036785|TP53TG5|27296|TP53 target 5##NM_014477|TP53TG5|27296|TP53 target 5##AB017802|TP53TG5|27296|TP53 target 5##NM_001197139|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##NM_001048221|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##NM_001048222|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##NM_001197140|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##AF220191|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##NM_018478|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##NM_001048223|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##NM_001048224|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##AJ276469|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##BC001105|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##BC012818|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##AL591565|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2##AK000531|DBNDD2|55861|dysbindin (dystrobrevin binding protein 1) domain containing 2	0.0	0.121491	
chr2	33683079	33683166	reg1020252.p1	3.715	+	AK125551 TSC_hg19_v1_chr2_+_33661417 BC027849 NM_170672 AK292983	-21674	+	TSC_hg19_v1_chr2_+_33359657 NM_000627 NM_001166264 NM_001166265 NM_001166266 AB208801 BC130289 BC144127 BC144128 M34057 AB384737 AF489528	-323417	+	NM_206943	-510754	+	NM_001139488	18198	+	TSC_hg19_v1_chr2_+_33701715 BX647990	18574	+	AB020653 NM_015376	55819	+	AK125551|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BC027849|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_170672|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AK292983|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_000627|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166264|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166265|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001166266|LTBP1|4052|latent transforming growth factor beta binding protein 1##AB208801|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC130289|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144127|LTBP1|4052|latent transforming growth factor beta binding protein 1##BC144128|LTBP1|4052|latent transforming growth factor beta binding protein 1##M34057|LTBP1|4052|latent transforming growth factor beta binding protein 1##AF489528|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_206943|LTBP1|4052|latent transforming growth factor beta binding protein 1##NM_001139488|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##BX647990|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##AB020653|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)##NM_015376|RASGRP3|25780|RAS guanyl releasing protein 3 (calcium and DAG-regulated)	0.0	0.0	
chr2	46115536	46115649	reg1015032.p1	3.715	+	AL832345 NM_005400 BC109033 BC109034 AK313842 X65293 AB385570	-236518	+	TSC_hg19_v1_chr2_-_45838402 AK056536 NM_018079	-277185	-	TSC_hg19_v1_chr2_-_45795116 AK316222 AK301122	-320464	-	TSC_hg19_v1_chr2_+_46524545 NM_001430 BC051338	408999	+	U81984 TSC_hg19_v1_chr2_+_46524905 U51626 AB384937	409383	+	NM_001145051	591111	+	AL832345|PRKCE|5581|protein kinase C, epsilon##NM_005400|PRKCE|5581|protein kinase C, epsilon##BC109033|PRKCE|5581|protein kinase C, epsilon##BC109034|PRKCE|5581|protein kinase C, epsilon##AK313842|PRKCE|5581|protein kinase C, epsilon##X65293|PRKCE|5581|protein kinase C, epsilon##AK056536|SRBD1|55133|S1 RNA binding domain 1##NM_018079|SRBD1|55133|S1 RNA binding domain 1##AK316222|SRBD1|55133|S1 RNA binding domain 1##AK301122|SRBD1|55133|S1 RNA binding domain 1##NM_001430|EPAS1|2034|endothelial PAS domain protein 1##BC051338|EPAS1|2034|endothelial PAS domain protein 1##U81984|EPAS1|2034|endothelial PAS domain protein 1##U51626|EPAS1|2034|endothelial PAS domain protein 1##NM_001145051|LOC388946|388946|transmembrane protein ENSP00000343375	0.996201	0.0	
chr3	4468388	4468477	reg1015031.p1	3.715	+	TSC_hg19_v1_chr3_+_4345048 AK222734 AK297865 AK302296 AB590082 AF054989 BC011635 BC008931 U80776 AY952295 CU679994	-123369	+	AK307537 NM_001243723 NM_006515 TSC_hg19_v1_chr3_+_4345015	-123424	+	TSC_hg19_v1_chr3_+_3841114 NM_020873	-627333	+	AY208752 AY323910 AK057983 TSC_hg19_v1_chr3_-_4508936 AK302018 AB448737 BC110862	40500	-	TSC_hg19_v1_chr3_-_4508945 AY358092 AK075459	40511	-	AK295240 TSC_hg19_v1_chr3_-_4508953 BC121122 BC121123	40520	-	AK222734|SETMAR|6419|SET domain and mariner transposase fusion gene##AK297865|SETMAR|6419|SET domain and mariner transposase fusion gene##AK302296|SETMAR|6419|SET domain and mariner transposase fusion gene##AF054989|SETMAR|6419|SET domain and mariner transposase fusion gene##BC011635|SETMAR|6419|SET domain and mariner transposase fusion gene##BC008931|SETMAR|6419|SET domain and mariner transposase fusion gene##U80776|SETMAR|6419|SET domain and mariner transposase fusion gene##AY952295|SETMAR|6419|SET domain and mariner transposase fusion gene##AK307537|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_001243723|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_006515|SETMAR|6419|SET domain and mariner transposase fusion gene##NM_020873|LRRN1|57633|leucine rich repeat neuronal 1##AY208752|SUMF1|285362|sulfatase modifying factor 1##AY323910|SUMF1|285362|sulfatase modifying factor 1##AK057983|SUMF1|285362|sulfatase modifying factor 1##AK302018|SUMF1|285362|sulfatase modifying factor 1##AB448737|SUMF1|285362|sulfatase modifying factor 1##BC110862|SUMF1|285362|sulfatase modifying factor 1##AY358092|SUMF1|285362|sulfatase modifying factor 1##AK075459|SUMF1|285362|sulfatase modifying factor 1##AK295240|SUMF1|285362|sulfatase modifying factor 1##BC121122|SUMF1|285362|sulfatase modifying factor 1##BC121123|SUMF1|285362|sulfatase modifying factor 1	0.0	0.0	
chr7	81553856	81554023	reg1013771.p2	3.715	+	FJ830861 FJ830862 M55379 CU687746 CU692548 AB384770 HQ258511 U46010 L02931 M73239 M73240 M60718 BC130284 BC130286 M77227 BC022308 AK313694 X57574 TSC_hg19_v1_chr7_-_81399364 BC063485 M29145 AB208900 X16323 AK291674 BC105797 NM_000601 NM_001010931 NM_001010932 NM_001010933 NM_001010934	-154565	-	AB000220 NM_006379 TSC_hg19_v1_chr7_-_80548678	-1005265	-	TSC_hg19_v1_chr7_-_80548503 AK312478 BC030690 AK299322	-1005505	-	M76559 BC117468 BC117470 TSC_hg19_v1_chr7_-_82072886	518907	-	TSC_hg19_v1_chr7_-_82073091 NM_000722 BC051339	519141	-	Y19188 BC122565 BC125271 AB587523 TSC_hg19_v1_chr7_-_82791940	1237930	-	FJ830861|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##FJ830862|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M55379|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##HQ258511|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##U46010|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##L02931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73239|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M73240|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M60718|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130284|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC130286|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M77227|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC022308|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK313694|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X57574|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC063485|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##M29145|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB208900|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##X16323|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AK291674|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##BC105797|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_000601|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010931|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010932|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010933|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##NM_001010934|HGF|3082|hepatocyte growth factor (hepapoietin A; scatter factor)##AB000220|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##NM_006379|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK312478|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##BC030690|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##AK299322|SEMA3C|10512|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C##M76559|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117468|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC117470|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##NM_000722|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##BC051339|CACNA2D1|781|calcium channel, voltage-dependent, alpha 2/delta subunit 1##Y19188|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC122565|PCLO|27445|piccolo (presynaptic cytomatrix protein)##BC125271|PCLO|27445|piccolo (presynaptic cytomatrix protein)	0.995485	0.0	denovo_WM_7:-68:0.974
chr10	119941166	119941239	reg1009085.p1	3.714	+	BC036393 TSC_hg19_v1_chr10_+_119806514 AJ535622 AK055184 BC112326 BC112326 AY226450 AY226451 AY226451 AJ344228 AJ344228 AJ535620 AJ535620 AJ535621	-134772	+	DQ013303 BC075073 BC075074 TSC_hg19_v1_chr10_-_119806407 AB023158 AY037299 NM_014904	-135158	-	TSC_hg19_v1_chr10_+_119302713 AB463605	-638459	+	TSC_hg19_v1_chr10_-_120101833 AK023250 BC023577 AK026630 NM_001134672 NM_022063	160622	-	AK313269 AK290461 NM_004248	413956	-	CU691560 TSC_hg19_v1_chr10_-_120514298	573085	-	BC036393|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535622|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AK055184|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##BC112326|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226450|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AY226451|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ344228|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535620|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##AJ535621|CASC2|255082|cancer susceptibility candidate 2 (non-protein coding)##DQ013303|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075073|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##BC075074|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AB023158|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AY037299|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##NM_014904|RAB11FIP2|22841|RAB11 family interacting protein 2 (class I)##AK023250|FAM204A|63877|family with sequence similarity 204, member A##BC023577|FAM204A|63877|family with sequence similarity 204, member A##AK026630|FAM204A|63877|family with sequence similarity 204, member A##NM_001134672|FAM204A|63877|family with sequence similarity 204, member A##NM_022063|FAM204A|63877|family with sequence similarity 204, member A##AK313269|PRLHR|2834|prolactin releasing hormone receptor##AK290461|PRLHR|2834|prolactin releasing hormone receptor##NM_004248|PRLHR|2834|prolactin releasing hormone receptor	0.0	0.0	
chr11	88168679	88168859	reg1011763.p1	3.714	+	TSC_hg19_v1_chr11_-_88070905 BX537913 NM_001114173 NM_001814 NM_148170	-97838	-	TSC_hg19_v1_chr11_-_88070902 AK223038 AK296190 AK311923 BC107770	-97867	-	AB527642 AM393622 BC146692 TSC_hg19_v1_chr11_-_88070864 AF234263 AF234264 AF254757 AF525032 AF525033 AK292117 BC023559 X87212 BC100891 BC100892 BC100893 BC100894 BC109386 BC110071 BC113850 BC113897 BC054028 BC008059	-97902	-	AY608336 D28538 D28539 NM_001143831	612370	-	AK291362 NM_000842	628046	-	NM_000372 BC027179 M74314 Y00819 U01873 J03581	742311	+	BX537913|CTSC|1075|cathepsin C##NM_001114173|CTSC|1075|cathepsin C##NM_001814|CTSC|1075|cathepsin C##NM_148170|CTSC|1075|cathepsin C##AK223038|CTSC|1075|cathepsin C##AK296190|CTSC|1075|cathepsin C##AK311923|CTSC|1075|cathepsin C##BC107770|CTSC|1075|cathepsin C##AM393622|CTSC|1075|cathepsin C##BC146692|CTSC|1075|cathepsin C##AF234263|CTSC|1075|cathepsin C##AF234264|CTSC|1075|cathepsin C##AF254757|CTSC|1075|cathepsin C##AF525032|CTSC|1075|cathepsin C##AF525033|CTSC|1075|cathepsin C##AK292117|CTSC|1075|cathepsin C##BC023559|CTSC|1075|cathepsin C##X87212|CTSC|1075|cathepsin C##BC100891|CTSC|1075|cathepsin C##BC100892|CTSC|1075|cathepsin C##BC100893|CTSC|1075|cathepsin C##BC100894|CTSC|1075|cathepsin C##BC109386|CTSC|1075|cathepsin C##BC110071|CTSC|1075|cathepsin C##BC113850|CTSC|1075|cathepsin C##BC113897|CTSC|1075|cathepsin C##BC054028|CTSC|1075|cathepsin C##BC008059|CTSC|1075|cathepsin C##AY608336|GRM5|2915|glutamate receptor, metabotropic 5##D28538|GRM5|2915|glutamate receptor, metabotropic 5##D28539|GRM5|2915|glutamate receptor, metabotropic 5##NM_001143831|GRM5|2915|glutamate receptor, metabotropic 5##AK291362|GRM5|2915|glutamate receptor, metabotropic 5##NM_000842|GRM5|2915|glutamate receptor, metabotropic 5##NM_000372|TYR|7299|tyrosinase (oculocutaneous albinism IA)##BC027179|TYR|7299|tyrosinase (oculocutaneous albinism IA)##M74314|TYR|7299|tyrosinase (oculocutaneous albinism IA)##Y00819|TYR|7299|tyrosinase (oculocutaneous albinism IA)##U01873|TYR|7299|tyrosinase (oculocutaneous albinism IA)##J03581|TYR|7299|tyrosinase (oculocutaneous albinism IA)	0.0	0.0	
chr13	100368253	100368386	reg1012132.p1	3.714	+	TSC_hg19_v1_chr13_+_100258943 NM_206808 AK300510 BC034360 AK095506 AF428253 CU689862	-109399	+	BC041830 TSC_hg19_v1_chr13_+_100229390	-138942	+	TSC_hg19_v1_chr13_+_100153777 BC130293	-214537	+	AF378304 NM_033132	255850	-	TSC_hg19_v1_chr13_+_100633453 AK298232	265136	+	TSC_hg19_v1_chr13_+_100634037 NM_007129	265701	+	NM_206808|CLYBL|171425|citrate lyase beta like##AK300510|CLYBL|171425|citrate lyase beta like##BC034360|CLYBL|171425|citrate lyase beta like##AK095506|CLYBL|171425|citrate lyase beta like##AF428253|CLYBL|171425|citrate lyase beta like##BC130293|TM9SF2|9375|transmembrane 9 superfamily member 2##AF378304|ZIC5|85416|Zic family member 5##NM_033132|ZIC5|85416|Zic family member 5##NM_007129|ZIC2|7546|Zic family member 2	0.0	0.0	
chr13	98622004	98622115	reg1018098.p1	3.714	+	NM_002271 BC045640	-16122	+	TSC_hg19_v1_chr13_+_98086683 AF205602 BC070031 EU832309 EU832393 X12534 AB464128 AF493914	-535357	+	TSC_hg19_v1_chr13_+_98086350 AK315139 NM_021033 BC041333	-535622	+	TSC_hg19_v1_chr13_+_98628928 BX648222 AK303494 AK225286 BC001497 BC019309 DQ893033 EU176755 U72761	6773	+	TSC_hg19_v1_chr13_+_98795412 NM_001001715 NM_005766	173362	+	TSC_hg19_v1_chr13_+_98795470 BC041595	173427	+	NM_002271|IPO5|3843|importin 5##BC045640|IPO5|3843|importin 5##AF205602|RAP2A|5911|RAP2A, member of RAS oncogene family##BC070031|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832309|RAP2A|5911|RAP2A, member of RAS oncogene family##EU832393|RAP2A|5911|RAP2A, member of RAS oncogene family##X12534|RAP2A|5911|RAP2A, member of RAS oncogene family##AF493914|RAP2A|5911|RAP2A, member of RAS oncogene family##AK315139|RAP2A|5911|RAP2A, member of RAS oncogene family##NM_021033|RAP2A|5911|RAP2A, member of RAS oncogene family##BC041333|RAP2A|5911|RAP2A, member of RAS oncogene family##BX648222|IPO5|3843|importin 5##AK303494|IPO5|3843|importin 5##AK225286|IPO5|3843|importin 5##BC001497|IPO5|3843|importin 5##BC019309|IPO5|3843|importin 5##DQ893033|IPO5|3843|importin 5##EU176755|IPO5|3843|importin 5##U72761|IPO5|3843|importin 5##NM_001001715|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##NM_005766|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)##BC041595|FARP1|10160|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	0.816191	0.0	denovo_WM_7:65:0.366	denovo_WM_7:66:0.347
chr14	24640783	24640885	reg1011055.p2	3.714	+	NM_006084 TSC_hg19_v1_chr14_+_24630473 AK308347 AK295467 M87503	-10358	+	TSC_hg19_v1_chr14_+_24616708 AK000973 AK225832 BC012077	-24112	+	NM_017999 TSC_hg19_v1_chr14_+_24616706 AK291247	-24152	+	TSC_hg19_v1_chr14_+_24641084 AK291191	258	+	TSC_hg19_v1_chr14_+_24641288 AK001435 NM_001048205 NM_005132 BC010887 AL832973	439	+	TSC_hg19_v1_chr14_-_24658004 AF411122 AK057044 AK056702 AK094897 AK314305 BX248267	17163	-	NM_006084|IRF9|10379|interferon regulatory factor 9##AK308347|IRF9|10379|interferon regulatory factor 9##AK295467|IRF9|10379|interferon regulatory factor 9##M87503|IRF9|10379|interferon regulatory factor 9##AK000973|RNF31|55072|ring finger protein 31##AK225832|RNF31|55072|ring finger protein 31##BC012077|RNF31|55072|ring finger protein 31##NM_017999|RNF31|55072|ring finger protein 31##AK291247|RNF31|55072|ring finger protein 31##AK291191|REC8|9985|REC8 homolog (yeast)##AK001435|REC8|9985|REC8 homolog (yeast)##NM_001048205|REC8|9985|REC8 homolog (yeast)##NM_005132|REC8|9985|REC8 homolog (yeast)##BC010887|REC8|9985|REC8 homolog (yeast)##AL832973|REC8|9985|REC8 homolog (yeast)##AF411122|IPO4|79711|importin 4##AK057044|IPO4|79711|importin 4##AK056702|IPO4|79711|importin 4##AK094897|IPO4|79711|importin 4##AK314305|IPO4|79711|importin 4##BX248267|IPO4|79711|importin 4	0.0	0.0	
chr16	10913905	10914018	reg1016096.p2	3.714	+	BC146882 BC146886 BC171807 BC171816 BC171817 BC171819 BC050569 AK124106 TSC_hg19_v1_chr16_-_10912528 NM_001079512 AK294418	-1413	-	TSC_hg19_v1_chr16_+_10837699 AK310089 NM_002484 AK307148 AK223204 BC100290 BC109322 BC109323	-76257	+	HQ258441 BC130336 BC130338 AK057433 NM_144674	-125196	-	AF410154 U18259 TSC_hg19_v1_chr16_+_10971058 AY084055 NM_000246 BC007406 BC007430 AY084054 U18288 X74301 U31931	57151	+	BC071683 TSC_hg19_v1_chr16_-_11036171	122205	-	TSC_hg19_v1_chr16_-_11036218 AK314111 BC037569 NM_014015	122274	-	BC146882|FAM18A|780776|family with sequence similarity 18, member A##BC146886|FAM18A|780776|family with sequence similarity 18, member A##BC171816|FAM18A|780776|family with sequence similarity 18, member A##BC171819|FAM18A|780776|family with sequence similarity 18, member A##BC050569|FAM18A|780776|family with sequence similarity 18, member A##AK124106|FAM18A|780776|family with sequence similarity 18, member A##NM_001079512|FAM18A|780776|family with sequence similarity 18, member A##AK294418|FAM18A|780776|family with sequence similarity 18, member A##AK310089|NUBP1|4682|nucleotide binding protein 1##NM_002484|NUBP1|4682|nucleotide binding protein 1##AK307148|NUBP1|4682|nucleotide binding protein 1##AK223204|NUBP1|4682|nucleotide binding protein 1##BC100290|NUBP1|4682|nucleotide binding protein 1##BC109322|NUBP1|4682|nucleotide binding protein 1##BC109323|NUBP1|4682|nucleotide binding protein 1##HQ258441|TEKT5|146279|tektin 5##BC130336|TEKT5|146279|tektin 5##BC130338|TEKT5|146279|tektin 5##AK057433|TEKT5|146279|tektin 5##NM_144674|TEKT5|146279|tektin 5##AF410154|CIITA|4261|class II, major histocompatibility complex, transactivator##U18259|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084055|CIITA|4261|class II, major histocompatibility complex, transactivator##NM_000246|CIITA|4261|class II, major histocompatibility complex, transactivator##AY084054|CIITA|4261|class II, major histocompatibility complex, transactivator##U18288|CIITA|4261|class II, major histocompatibility complex, transactivator##X74301|CIITA|4261|class II, major histocompatibility complex, transactivator##U31931|CIITA|4261|class II, major histocompatibility complex, transactivator##BC071683|DEXI|28955|Dexi homolog (mouse)##AK314111|DEXI|28955|Dexi homolog (mouse)##BC037569|DEXI|28955|Dexi homolog (mouse)##NM_014015|DEXI|28955|Dexi homolog (mouse)	0.997205	0.0	denovo_WM_7:-13:0.816
chr17	37760920	37761023	reg1007210.p1	3.714	+	TSC_hg19_v1_chr17_+_37618267 AF227198 BC140854 AB462974	-142685	+	TSC_hg19_v1_chr17_+_37617760 NM_015083 NM_016507 AK302645	-143219	+	CU687400 BC131783 AF055994 BC006517 Y13467 BC060758 TSC_hg19_v1_chr17_-_37607519 AK299789 AK314185 NM_004774	-153550	-	TSC_hg19_v1_chr17_-_37764168 BC022481 NM_006160	3202	-	NM_032192 AF464196 TSC_hg19_v1_chr17_+_37783188	22213	+	TSC_hg19_v1_chr17_+_37783204 AK123112 AK127542 AK129537 AF435972	22238	+	AF227198|CDK12|51755|cyclin-dependent kinase 12##BC140854|CDK12|51755|cyclin-dependent kinase 12##NM_015083|CDK12|51755|cyclin-dependent kinase 12##NM_016507|CDK12|51755|cyclin-dependent kinase 12##AK302645|CDK12|51755|cyclin-dependent kinase 12##BC131783|MED1|5469|mediator complex subunit 1##AF055994|MED1|5469|mediator complex subunit 1##BC006517|MED1|5469|mediator complex subunit 1##Y13467|MED1|5469|mediator complex subunit 1##BC060758|MED1|5469|mediator complex subunit 1##AK299789|MED1|5469|mediator complex subunit 1##AK314185|MED1|5469|mediator complex subunit 1##NM_004774|MED1|5469|mediator complex subunit 1##BC022481|NEUROD2|4761|neurogenic differentiation 2##NM_006160|NEUROD2|4761|neurogenic differentiation 2##NM_032192|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AF464196|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AK123112|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AK127542|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AK129537|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B##AF435972|PPP1R1B|84152|protein phosphatase 1, regulatory (inhibitor) subunit 1B	3.762729	0.0	denovo_WM_7:-50:0.917	denovo_WM_7:-68:0.361
chr20	31957379	31957480	reg1005277.p2	3.714	+	NM_033197 AK290243 AF364078 AK310964 TSC_hg19_v1_chr20_+_31871019 AK313176 BC008429 AY358595	-86445	+	AF417256 AF417257 BC012549 NM_001243193 NM_016583 NM_130852 AK292778 AY359020 AB024937 AF158745 AF439448 AF172993	-133617	+	BC041904 NM_001042439 NM_178466 BC066354	-152292	+	BC001215 TSC_hg19_v1_chr20_-_31989326 AF152097 BC050706 AK027449 AF161516 AK023992 AK222745 AK292075 AK295342 AK309906 AK314532 AY462283 AY462284	31885	-	TSC_hg19_v1_chr20_-_31989330 NM_016082 NM_016408	31910	-	AB590297 DQ893566 DQ896816 AK301800 TSC_hg19_v1_chr20_-_32031570 U40571 BC026215 S81737 AK291994 NM_003098	74132	-	NM_033197|BPIFB1|92747|BPI fold containing family B, member 1##AK290243|BPIFB1|92747|BPI fold containing family B, member 1##AF364078|BPIFB1|92747|BPI fold containing family B, member 1##AK310964|BPIFB1|92747|BPI fold containing family B, member 1##AK313176|BPIFB1|92747|BPI fold containing family B, member 1##BC008429|BPIFB1|92747|BPI fold containing family B, member 1##AY358595|BPIFB1|92747|BPI fold containing family B, member 1##AF417256|BPIFA1|51297|BPI fold containing family A, member 1##AF417257|BPIFA1|51297|BPI fold containing family A, member 1##BC012549|BPIFA1|51297|BPI fold containing family A, member 1##NM_001243193|BPIFA1|51297|BPI fold containing family A, member 1##NM_016583|BPIFA1|51297|BPI fold containing family A, member 1##NM_130852|BPIFA1|51297|BPI fold containing family A, member 1##AK292778|BPIFA1|51297|BPI fold containing family A, member 1##AY359020|BPIFA1|51297|BPI fold containing family A, member 1##AB024937|BPIFA1|51297|BPI fold containing family A, member 1##AF158745|BPIFA1|51297|BPI fold containing family A, member 1##AF439448|BPIFA1|51297|BPI fold containing family A, member 1##AF172993|BPIFA1|51297|BPI fold containing family A, member 1##BC041904|BPIFA3|128861|BPI fold containing family A, member 3##NM_001042439|BPIFA3|128861|BPI fold containing family A, member 3##NM_178466|BPIFA3|128861|BPI fold containing family A, member 3##BC066354|BPIFA3|128861|BPI fold containing family A, member 3##BC001215|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF152097|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##BC050706|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK027449|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AF161516|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK023992|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK222745|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK292075|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK295342|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK309906|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AK314532|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462283|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##AY462284|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016082|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##NM_016408|CDK5RAP1|51654|CDK5 regulatory subunit associated protein 1##DQ893566|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##DQ896816|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK301800|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##U40571|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##BC026215|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##S81737|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##AK291994|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)##NM_003098|SNTA1|6640|syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)	0.0	0.0	
chr2	203534861	203534932	reg1008823.p2	3.714	+	AB053315 TSC_hg19_v1_chr2_+_203500263	-34659	+	TSC_hg19_v1_chr2_+_203499820 NM_173511	-35037	+	TSC_hg19_v1_chr2_+_203499703 AK096090	-35207	+	AK055978 AB053316 TSC_hg19_v1_chr2_-_203736166	201182	-	TSC_hg19_v1_chr2_-_203736185 NM_178231	201293	-	TSC_hg19_v1_chr2_-_203736227 AL833904 BC063876 NM_138468	201400	-	AB053315|FAM117B|150864|family with sequence similarity 117, member B##NM_173511|FAM117B|150864|family with sequence similarity 117, member B##AK096090|FAM117B|150864|family with sequence similarity 117, member B##AK055978|ICA1L|130026|islet cell autoantigen 1,69kDa-like##AB053316|ICA1L|130026|islet cell autoantigen 1,69kDa-like##NM_178231|ICA1L|130026|islet cell autoantigen 1,69kDa-like##AL833904|ICA1L|130026|islet cell autoantigen 1,69kDa-like##BC063876|ICA1L|130026|islet cell autoantigen 1,69kDa-like##NM_138468|ICA1L|130026|islet cell autoantigen 1,69kDa-like	0.0	0.0	
chr2	87623854	87624001	reg1011612.p1	3.714	+	TSC_hg19_v1_chr2_-_87303546 BC132791 BC132793 BC030543 BC011756 BC013972 BC033072	-320595	-	BC107767 BC109248 BC070296 BC005379 NM_001032392 M93143 NM_002665 BC022294	-374969	-	CR749330 NM_001024457	-479190	+	TSC_hg19_v1_chr2_+_87755000 BC009508 BC073906	131090	+	TSC_hg19_v1_chr2_+_87755060 AK312010	131133	+	BC022294 M93143 NM_002665 BC005379 NM_001032392 BC070296 BC109248 BC107767	423692	+	BC132791|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC132793|LOC285074|285074|anaphase promoting complex subunit 1 pseudogene##BC107767|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC022294|PLGLB2|5342|plasminogen-like B2##CR749330|RGPD1|400966|RANBP2-like and GRIP domain containing 1##NM_001024457|RGPD1|400966|RANBP2-like and GRIP domain containing 1##BC009508|LINC00152|112597|long intergenic non-protein coding RNA 152##BC073906|LINC00152|112597|long intergenic non-protein coding RNA 152##AK312010|LINC00152|112597|long intergenic non-protein coding RNA 152##BC022294|PLGLB2|5342|plasminogen-like B2##M93143|PLGLB2|5342|plasminogen-like B2##NM_002665|PLGLB2|5342|plasminogen-like B2##BC005379|PLGLB2|5342|plasminogen-like B2##NM_001032392|PLGLB1|5343|plasminogen-like B1##BC070296|PLGLB1|5343|plasminogen-like B1##BC109248|PLGLB1|5343|plasminogen-like B1##BC107767|PLGLB1|5343|plasminogen-like B1	0.0	0.0	
chr8	42845493	42845584	reg1018642.p2	3.714	+	TSC_hg19_v1_chr8_+_42752142 BC056146	-93392	+	TSC_hg19_v1_chr8_+_42752090 AK309224	-93450	+	TSC_hg19_v1_chr8_+_42752068 BC048304 NM_032410	-93486	+	TSC_hg19_v1_chr8_+_42911465 NM_002027 BC037295 AK292121 L00634 BC084566 L10413 AB590505 BT009854 BC017029	65930	+	TSC_hg19_v1_chr8_+_42948657 NM_032237	103115	+	AK027009 TSC_hg19_v1_chr8_+_42948660	103129	+	BC056146|HOOK3|84376|hook homolog 3 (Drosophila)##AK309224|HOOK3|84376|hook homolog 3 (Drosophila)##BC048304|HOOK3|84376|hook homolog 3 (Drosophila)##NM_032410|HOOK3|84376|hook homolog 3 (Drosophila)##NM_002027|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC037295|FNTA|2339|farnesyltransferase, CAAX box, alpha##AK292121|FNTA|2339|farnesyltransferase, CAAX box, alpha##L00634|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC084566|FNTA|2339|farnesyltransferase, CAAX box, alpha##L10413|FNTA|2339|farnesyltransferase, CAAX box, alpha##BT009854|FNTA|2339|farnesyltransferase, CAAX box, alpha##BC017029|FNTA|2339|farnesyltransferase, CAAX box, alpha##NM_032237|SGK196|84197|protein kinase-like protein SgK196	1.982992	0.0	denovo_WM_7:-40:0.216	denovo_WM_7:-62:0.210
chr9	98272746	98272911	reg1002025.p2	3.714	+	NM_000264 TSC_hg19_v1_chr9_-_98270933	-1944	-	AB189438 AB189439 NM_001083604 NM_001083605	-2507	-	TSC_hg19_v1_chr9_-_98269686 NM_001083606 U43148	-3128	-	AB212827 AB212828 AB239329 TSC_hg19_v1_chr9_-_98279070	6176	-	AB189436 AB189437 NM_001083602 NM_001083603 BC043542	6464	-	TSC_hg19_v1_chr9_-_98637744 AF170307	364924	-	NM_000264|PTCH1|5727|patched 1##AB189438|PTCH1|5727|patched 1##AB189439|PTCH1|5727|patched 1##NM_001083604|PTCH1|5727|patched 1##NM_001083605|PTCH1|5727|patched 1##NM_001083606|PTCH1|5727|patched 1##U43148|PTCH1|5727|patched 1##AB212827|PTCH1|5727|patched 1##AB212828|PTCH1|5727|patched 1##AB239329|PTCH1|5727|patched 1##AB189436|PTCH1|5727|patched 1##AB189437|PTCH1|5727|patched 1##NM_001083602|PTCH1|5727|patched 1##NM_001083603|PTCH1|5727|patched 1##BC043542|PTCH1|5727|patched 1##AF170307|LINC00476|100128782|long intergenic non-protein coding RNA 476	0.998452	0.0	denovo_WM_7:76:0.931
chr12	787147	787233	reg1006720.p1	3.713	+	CU691216 BC057766 AF205633 BC015737 AB528850 NM_016533 AK315995 AK296012	-14475	-	TSC_hg19_v1_chr12_-_752800 AK298043	-34371	-	BC033133 TSC_hg19_v1_chr12_+_752201 AK311371	-35012	+	AF061944 NM_001184985 NM_014823 NM_018979 NM_213655 BC021121 BC071959 BC094862	74966	+	AJ296290 BC141881 TSC_hg19_v1_chr12_+_862782	75566	+	BC013629 TSC_hg19_v1_chr12_+_1017145	229892	+	BC057766|NINJ2|4815|ninjurin 2##AF205633|NINJ2|4815|ninjurin 2##NM_016533|NINJ2|4815|ninjurin 2##AK315995|NINJ2|4815|ninjurin 2##AK296012|NINJ2|4815|ninjurin 2##BC033133|LOC100049716|100049716|uncharacterized LOC100049716##AF061944|WNK1|65125|WNK lysine deficient protein kinase 1##NM_001184985|WNK1|65125|WNK lysine deficient protein kinase 1##NM_014823|WNK1|65125|WNK lysine deficient protein kinase 1##NM_018979|WNK1|65125|WNK lysine deficient protein kinase 1##NM_213655|WNK1|65125|WNK lysine deficient protein kinase 1##BC021121|WNK1|65125|WNK lysine deficient protein kinase 1##BC071959|WNK1|65125|WNK lysine deficient protein kinase 1##BC094862|WNK1|65125|WNK lysine deficient protein kinase 1##AJ296290|WNK1|65125|WNK lysine deficient protein kinase 1##BC141881|WNK1|65125|WNK lysine deficient protein kinase 1##BC013629|WNK1|65125|WNK lysine deficient protein kinase 1	1.961308	0.0	denovo_WM_7:30:0.817	denovo_WM_7:51:0.883
chr16	67514201	67514378	reg1004268.p2	3.713	+	TSC_hg19_v1_chr16_+_67465023 U26726 BC036780 BC064536 NM_000196 U14631	-49259	+	TSC_hg19_v1_chr16_-_67450360 NM_013304 U90653 BC021908	-63992	-	TSC_hg19_v1_chr16_-_67427402 AF132972 AF078846 BC000691 NM_015964 NM_016140	-86910	-	CU679153 DQ893270 DQ896601 X71490 TSC_hg19_v1_chr16_-_67515051 AK300570 AK313035 AK125522 BC008861 NM_004691	755	-	NM_001138 U88063	3426	-	TSC_hg19_v1_chr16_+_67562734 NM_024519 AK127792 NM_001193522 AK307467 BC012730	48452	+	U26726|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC036780|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##BC064536|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_000196|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##U14631|HSD11B2|3291|hydroxysteroid (11-beta) dehydrogenase 2##NM_013304|ZDHHC1|29800|zinc finger, DHHC-type containing 1##U90653|ZDHHC1|29800|zinc finger, DHHC-type containing 1##BC021908|ZDHHC1|29800|zinc finger, DHHC-type containing 1##AF132972|TPPP3|51673|tubulin polymerization-promoting protein family member 3##AF078846|TPPP3|51673|tubulin polymerization-promoting protein family member 3##BC000691|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_015964|TPPP3|51673|tubulin polymerization-promoting protein family member 3##NM_016140|TPPP3|51673|tubulin polymerization-promoting protein family member 3##DQ893270|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##DQ896601|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##X71490|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK300570|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK313035|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##AK125522|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##BC008861|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##NM_004691|ATP6V0D1|9114|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1##NM_001138|AGRP|181|agouti related protein homolog (mouse)##U88063|AGRP|181|agouti related protein homolog (mouse)##NM_024519|FAM65A|79567|family with sequence similarity 65, member A##AK127792|FAM65A|79567|family with sequence similarity 65, member A##NM_001193522|FAM65A|79567|family with sequence similarity 65, member A##AK307467|FAM65A|79567|family with sequence similarity 65, member A	0.0	0.0	
chr19	10521552	10521648	reg1013815.p1	3.713	+	TSC_hg19_v1_chr19_-_10514250 NM_007065	-7344	-	TSC_hg19_v1_chr19_-_10514219 BC000083 BC008793 U63131	-7387	-	AB463478 AM393285 AM393349 BT006796 CR542249 DQ892174 DQ895369 U43077 TSC_hg19_v1_chr19_-_10514182	-7431	-	AY593872 NM_001243121 TSC_hg19_v1_chr19_+_10527555	5903	+	TSC_hg19_v1_chr19_+_10531189 L20965 NM_001111307	9630	+	TSC_hg19_v1_chr19_+_10541488 AY618547 NM_001111308	19827	+	NM_007065|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC000083|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BC008793|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U63131|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393285|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AM393349|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##BT006796|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##CR542249|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ892174|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##DQ895369|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##U43077|CDC37|11140|cell division cycle 37 homolog (S. cerevisiae)##AY593872|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001243121|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##L20965|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111307|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##AY618547|PDE4A|5141|phosphodiesterase 4A, cAMP-specific##NM_001111308|PDE4A|5141|phosphodiesterase 4A, cAMP-specific	0.235042	0.0	
chr19	11390502	11390682	reg1010960.p1	3.713	+	AB384597 TSC_hg19_v1_chr19_-_11373144 AB037816 BC146786 BC095483 NM_020812	-17454	-	TSC_hg19_v1_chr19_+_11350294 NM_018687 AY358356	-40296	+	TSC_hg19_v1_chr19_-_11308465 AK000011 AK225038	-82130	-	AF133424 NM_012466 BC029908	16241	+	AF081353 TSC_hg19_v1_chr19_-_11450305 BC016471 AK313538 NM_004283	59708	-	BC008365 BC091472 AY358949 TSC_hg19_v1_chr19_-_11456946 AK291979 NM_001145416 NM_033408 NM_198536	66341	-	AB037816|DOCK6|57572|dedicator of cytokinesis 6##BC146786|DOCK6|57572|dedicator of cytokinesis 6##BC095483|DOCK6|57572|dedicator of cytokinesis 6##NM_020812|DOCK6|57572|dedicator of cytokinesis 6##NM_018687|C19orf80|55908|chromosome 19 open reading frame 80##AY358356|C19orf80|55908|chromosome 19 open reading frame 80##AK000011|KANK2|25959|KN motif and ankyrin repeat domains 2##AK225038|KANK2|25959|KN motif and ankyrin repeat domains 2##NM_012466|TSPAN16|26526|tetraspanin 16##BC029908|TSPAN16|26526|tetraspanin 16##AF081353|RAB3D|9545|RAB3D, member RAS oncogene family##BC016471|RAB3D|9545|RAB3D, member RAS oncogene family##AK313538|RAB3D|9545|RAB3D, member RAS oncogene family##NM_004283|RAB3D|9545|RAB3D, member RAS oncogene family##BC008365|TMEM205|374882|transmembrane protein 205##BC091472|TMEM205|374882|transmembrane protein 205##AY358949|TMEM205|374882|transmembrane protein 205##AK291979|TMEM205|374882|transmembrane protein 205##NM_001145416|TMEM205|374882|transmembrane protein 205##NM_033408|TMEM205|374882|transmembrane protein 205##NM_198536|TMEM205|374882|transmembrane protein 205	0.0	0.0	
chr4	57741199	57741296	reg1005334.p1	3.713	+	CR542135 DQ895533 EU176199 TSC_hg19_v1_chr4_-_57687883 AK312222 NM_021114 X57655 BC022514 GU727622	-53382	-	AF492675 NM_001145460 NM_032495 NM_139212	-193389	-	BC014225 AB059410 TSC_hg19_v1_chr4_-_57522645 AF492680 AF492681 NM_001145459 NM_139211	-218669	-	TSC_hg19_v1_chr4_+_57774035 NM_005612	32808	+	TSC_hg19_v1_chr4_+_57774090 BC038985 U13879 U22680	32916	+	BC132859 BC136491 TSC_hg19_v1_chr4_+_57774509	33190	+	CR542135|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##DQ895533|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##EU176199|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AK312222|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##NM_021114|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##X57655|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##BC022514|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##GU727622|SPINK2|6691|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)##AF492675|HOPX|84525|HOP homeobox##NM_001145460|HOPX|84525|HOP homeobox##NM_032495|HOPX|84525|HOP homeobox##NM_139212|HOPX|84525|HOP homeobox##BC014225|HOPX|84525|HOP homeobox##AB059410|HOPX|84525|HOP homeobox##AF492680|HOPX|84525|HOP homeobox##AF492681|HOPX|84525|HOP homeobox##NM_001145459|HOPX|84525|HOP homeobox##NM_139211|HOPX|84525|HOP homeobox##NM_005612|REST|5978|RE1-silencing transcription factor##BC038985|REST|5978|RE1-silencing transcription factor##U13879|REST|5978|RE1-silencing transcription factor##BC132859|REST|5978|RE1-silencing transcription factor##BC136491|REST|5978|RE1-silencing transcription factor	0.0	0.0	
chr6	153411505	153411602	reg1010625.p1	3.713	+	TSC_hg19_v1_chr6_-_153323873 AK297671 NM_001114184 NM_019041	-87656	-	TSC_hg19_v1_chr6_-_153323849 AK095240	-87695	-	TSC_hg19_v1_chr6_-_153323845 BC105973 BC011873	-87710	-	BC013117 NM_012419 AF202257 TSC_hg19_v1_chr6_-_153452453	40867	-	AB055767 TSC_hg19_v1_chr6_-_153603892	192338	-	DQ680044 NM_001145279 NM_001145280 EU340241 EU340242 EU340243 NM_001145281	920079	+	AK297671|MTRF1L|54516|mitochondrial translational release factor 1-like##NM_001114184|MTRF1L|54516|mitochondrial translational release factor 1-like##NM_019041|MTRF1L|54516|mitochondrial translational release factor 1-like##AK095240|MTRF1L|54516|mitochondrial translational release factor 1-like##BC105973|MTRF1L|54516|mitochondrial translational release factor 1-like##BC011873|MTRF1L|54516|mitochondrial translational release factor 1-like##BC013117|RGS17|26575|regulator of G-protein signaling 17##NM_012419|RGS17|26575|regulator of G-protein signaling 17##AF202257|RGS17|26575|regulator of G-protein signaling 17##DQ680044|OPRM1|4988|opioid receptor, mu 1##NM_001145279|OPRM1|4988|opioid receptor, mu 1##NM_001145280|OPRM1|4988|opioid receptor, mu 1##EU340241|OPRM1|4988|opioid receptor, mu 1##EU340242|OPRM1|4988|opioid receptor, mu 1##EU340243|OPRM1|4988|opioid receptor, mu 1##NM_001145281|OPRM1|4988|opioid receptor, mu 1	0.999374	0.0	
chr6	43576176	43576289	reg1018556.p1	3.713	+	AK316151 TSC_hg19_v1_chr6_+_43543921 AB024313 AF158185 BC015742	-32255	+	NM_006502 AK023893 AK307660 AK294430 TSC_hg19_v1_chr6_+_43543902	-32337	+	TSC_hg19_v1_chr6_-_43543767 AK056619 AK291452 BC062635 NM_020750	-32443	-	AK000430 TSC_hg19_v1_chr6_-_43595067	18825	-	TSC_hg19_v1_chr6_-_43595101 AK290267	18873	-	AL834331 AF168990 CU687988 TSC_hg19_v1_chr6_-_43596918	20609	-	AK316151|POLH|5429|polymerase (DNA directed), eta##AB024313|POLH|5429|polymerase (DNA directed), eta##AF158185|POLH|5429|polymerase (DNA directed), eta##BC015742|POLH|5429|polymerase (DNA directed), eta##NM_006502|POLH|5429|polymerase (DNA directed), eta##AK023893|POLH|5429|polymerase (DNA directed), eta##AK307660|POLH|5429|polymerase (DNA directed), eta##AK294430|POLH|5429|polymerase (DNA directed), eta##AK056619|XPO5|57510|exportin 5##AK291452|XPO5|57510|exportin 5##BC062635|XPO5|57510|exportin 5##NM_020750|XPO5|57510|exportin 5##AK000430|GTPBP2|54676|GTP binding protein 2##AK290267|GTPBP2|54676|GTP binding protein 2##AL834331|GTPBP2|54676|GTP binding protein 2##AF168990|GTPBP2|54676|GTP binding protein 2	0.0	0.956547	CTCF.p2:-20:0.957
chr12	123210716	123210801	reg1015848.p2	3.712	+	AK290930 BC038955 AK313212 BC047891 D10923 NM_006018	-9380	-	AK290915 BC056419 AY148884 BC063461 BC027965 NM_177551	-22886	-	TSC_hg19_v1_chr12_+_123011806 BC055410 AK303337 BC150278 D79988 NM_014708	-198954	+	BC095506 AY507143 EU809458 GQ129267 GQ129268 AK313955 BC066881 BC066882 BC066883 BC067484 AF345568 AF385431 AF385432 NM_032554	4247	-	TSC_hg19_v1_chr12_+_123237367 AF038554 AK299463 NM_003677 AB014731 BC007860 BC000925	26633	+	NM_201435 TSC_hg19_v1_chr12_+_123259079 BC060796 AY254201 AK097663 AK292466	48343	+	AK290930|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC038955|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK313212|HCAR3|8843|hydroxycarboxylic acid receptor 3##BC047891|HCAR3|8843|hydroxycarboxylic acid receptor 3##D10923|HCAR3|8843|hydroxycarboxylic acid receptor 3##NM_006018|HCAR3|8843|hydroxycarboxylic acid receptor 3##AK290915|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC056419|HCAR2|338442|hydroxycarboxylic acid receptor 2##AY148884|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC063461|HCAR2|338442|hydroxycarboxylic acid receptor 2##BC027965|HCAR2|338442|hydroxycarboxylic acid receptor 2##NM_177551|HCAR2|338442|hydroxycarboxylic acid receptor 2##AK303337|KNTC1|9735|kinetochore associated 1##BC150278|KNTC1|9735|kinetochore associated 1##D79988|KNTC1|9735|kinetochore associated 1##NM_014708|KNTC1|9735|kinetochore associated 1##BC095506|HCAR1|27198|hydroxycarboxylic acid receptor 1##AY507143|HCAR1|27198|hydroxycarboxylic acid receptor 1##EU809458|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129267|HCAR1|27198|hydroxycarboxylic acid receptor 1##GQ129268|HCAR1|27198|hydroxycarboxylic acid receptor 1##AK313955|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066881|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066882|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC066883|HCAR1|27198|hydroxycarboxylic acid receptor 1##BC067484|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF345568|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385431|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF385432|HCAR1|27198|hydroxycarboxylic acid receptor 1##NM_032554|HCAR1|27198|hydroxycarboxylic acid receptor 1##AF038554|DENR|8562|density-regulated protein##AK299463|DENR|8562|density-regulated protein##NM_003677|DENR|8562|density-regulated protein##AB014731|DENR|8562|density-regulated protein##BC007860|DENR|8562|density-regulated protein##BC000925|DENR|8562|density-regulated protein##NM_201435|CCDC62|84660|coiled-coil domain containing 62##BC060796|CCDC62|84660|coiled-coil domain containing 62##AY254201|CCDC62|84660|coiled-coil domain containing 62##AK097663|CCDC62|84660|coiled-coil domain containing 62##AK292466|CCDC62|84660|coiled-coil domain containing 62	0.0	0.0	
chr12	131302086	131302229	reg1011956.p1	3.712	+	TSC_hg19_v1_chr12_-_131200818 BC007632	-101332	-	AB002316 NM_015347	-299748	-	TSC_hg19_v1_chr12_+_130822635 BC028581 AF387507 AF104260 AK093133 AX747944	-479535	+	TSC_hg19_v1_chr12_-_131323796 D14582 BC047496 NM_001980 NM_194356	21596	-	TSC_hg19_v1_chr12_+_131356615 AF054183 AK311223 AK316193 AK312466 BC000852 NM_006325	54429	+	AK300934 TSC_hg19_v1_chr12_+_131356617 BC014518 AL357616 BC051908	54468	+	BC007632|RIMBP2|23504|RIMS binding protein 2##AB002316|RIMBP2|23504|RIMS binding protein 2##NM_015347|RIMBP2|23504|RIMS binding protein 2##BC028581|PIWIL1|9271|piwi-like 1 (Drosophila)##AF387507|PIWIL1|9271|piwi-like 1 (Drosophila)##AF104260|PIWIL1|9271|piwi-like 1 (Drosophila)##AK093133|PIWIL1|9271|piwi-like 1 (Drosophila)##D14582|STX2|2054|syntaxin 2##BC047496|STX2|2054|syntaxin 2##NM_001980|STX2|2054|syntaxin 2##NM_194356|STX2|2054|syntaxin 2##AF054183|RAN|5901|RAN, member RAS oncogene family##AK316193|RAN|5901|RAN, member RAS oncogene family##AK312466|RAN|5901|RAN, member RAS oncogene family##BC000852|RAN|5901|RAN, member RAS oncogene family##NM_006325|RAN|5901|RAN, member RAS oncogene family##AK300934|RAN|5901|RAN, member RAS oncogene family##BC014518|RAN|5901|RAN, member RAS oncogene family##AL357616|RAN|5901|RAN, member RAS oncogene family##BC051908|RAN|5901|RAN, member RAS oncogene family	0.547038	0.0	denovo_WM_7:17:0.547
chr14	100489465	100489559	reg1015647.p1	3.712	+	AK295919 TSC_hg19_v1_chr14_+_100485800	-3753	+	TSC_hg19_v1_chr14_+_100438137 AK289720 BC023997	-51358	+	TSC_hg19_v1_chr14_+_100259749 AK126980 BX247979 NM_001008707 NM_004434 BC033043 U97018 BC032541 CU689414 DQ891556 DQ894743	-229808	+	TSC_hg19_v1_chr14_+_100531758 NM_016337 AK301379	42240	+	TSC_hg19_v1_chr14_+_100531768 AF087843 BC032358 AF052504	42283	+	AF131766 TSC_hg19_v1_chr14_+_100563847	74321	+	AK295919|EVL|51466|Enah/Vasp-like##AK289720|EVL|51466|Enah/Vasp-like##BC023997|EVL|51466|Enah/Vasp-like##AK126980|EML1|2009|echinoderm microtubule associated protein like 1##BX247979|EML1|2009|echinoderm microtubule associated protein like 1##NM_001008707|EML1|2009|echinoderm microtubule associated protein like 1##NM_004434|EML1|2009|echinoderm microtubule associated protein like 1##BC033043|EML1|2009|echinoderm microtubule associated protein like 1##U97018|EML1|2009|echinoderm microtubule associated protein like 1##BC032541|EML1|2009|echinoderm microtubule associated protein like 1##DQ891556|EML1|2009|echinoderm microtubule associated protein like 1##DQ894743|EML1|2009|echinoderm microtubule associated protein like 1##NM_016337|EVL|51466|Enah/Vasp-like##AK301379|EVL|51466|Enah/Vasp-like##AF087843|EVL|51466|Enah/Vasp-like##BC032358|EVL|51466|Enah/Vasp-like##AF052504|EVL|51466|Enah/Vasp-like##AF131766|EVL|51466|Enah/Vasp-like	1.006984	0.0	denovo_WM_7:27:0.812
chr16	75077089	75077197	reg1010026.p1	3.712	+	TSC_hg19_v1_chr16_+_75033257 AK294434 BC007235 AF378524 AL136903	-43883	+	TSC_hg19_v1_chr16_+_75032911 NM_032268	-44249	+	TSC_hg19_v1_chr16_-_75019011 NM_030581	-58118	-	CU690528 TSC_hg19_v1_chr16_-_75150650 BC040279	73494	-	AY092767 BC047902 NM_153486 NM_194436 TSC_hg19_v1_chr16_-_75150679	73536	-	AK296560 TSC_hg19_v1_chr16_+_75182389 AK291372 NM_153688 AK094761 AK308134 BC064604	105291	+	AK294434|ZNRF1|84937|zinc and ring finger 1##BC007235|ZNRF1|84937|zinc and ring finger 1##AF378524|ZNRF1|84937|zinc and ring finger 1##AL136903|ZNRF1|84937|zinc and ring finger 1##NM_032268|ZNRF1|84937|zinc and ring finger 1##NM_030581|WDR59|79726|WD repeat domain 59##BC040279|LDHD|197257|lactate dehydrogenase D##AY092767|LDHD|197257|lactate dehydrogenase D##BC047902|LDHD|197257|lactate dehydrogenase D##NM_153486|LDHD|197257|lactate dehydrogenase D##NM_194436|LDHD|197257|lactate dehydrogenase D##AK296560|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK291372|ZFP1|162239|zinc finger protein 1 homolog (mouse)##NM_153688|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK094761|ZFP1|162239|zinc finger protein 1 homolog (mouse)##AK308134|ZFP1|162239|zinc finger protein 1 homolog (mouse)##BC064604|ZFP1|162239|zinc finger protein 1 homolog (mouse)	0.0	0.0	
chr19	35480038	35480172	reg1008066.p2	3.712	+	NM_175872 TSC_hg19_v1_chr19_-_35454952	-25147	-	AK304550 TSC_hg19_v1_chr19_-_35454915	-25212	-	NM_001099437 NM_001099438 NM_194325 TSC_hg19_v1_chr19_+_35417809 BC142996 BX640666 AK295515 AK290435	-62227	+	TSC_hg19_v1_chr19_+_35491226 AK074864 BC014077 NM_001136199 NM_020895	11159	+	AK074914 TSC_hg19_v1_chr19_+_35491368	11251	+	BC067122 NM_001037 NM_199037 L10338 AK295477 L16242 AK313279 AB528721 AY391842 BT019923	41552	+	NM_175872|ZNF792|126375|zinc finger protein 792##AK304550|ZNF792|126375|zinc finger protein 792##NM_001099437|ZNF30|90075|zinc finger protein 30##NM_001099438|ZNF30|90075|zinc finger protein 30##NM_194325|ZNF30|90075|zinc finger protein 30##BC142996|ZNF30|90075|zinc finger protein 30##BX640666|ZNF30|90075|zinc finger protein 30##AK295515|ZNF30|90075|zinc finger protein 30##AK290435|ZNF30|90075|zinc finger protein 30##AK074864|GRAMD1A|57655|GRAM domain containing 1A##BC014077|GRAMD1A|57655|GRAM domain containing 1A##NM_001136199|GRAMD1A|57655|GRAM domain containing 1A##NM_020895|GRAMD1A|57655|GRAM domain containing 1A##AK074914|GRAMD1A|57655|GRAM domain containing 1A##BC067122|SCN1B|6324|sodium channel, voltage-gated, type I, beta##NM_001037|SCN1B|6324|sodium channel, voltage-gated, type I, beta##NM_199037|SCN1B|6324|sodium channel, voltage-gated, type I, beta##L10338|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AK295477|SCN1B|6324|sodium channel, voltage-gated, type I, beta##L16242|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AK313279|SCN1B|6324|sodium channel, voltage-gated, type I, beta##AY391842|SCN1B|6324|sodium channel, voltage-gated, type I, beta##BT019923|SCN1B|6324|sodium channel, voltage-gated, type I, beta	0.98791	0.0	denovo_WM_7:21:0.988
chr3	73150415	73150571	reg1017256.p1	3.712	+	BC051316 BC064501 NM_018029	-39684	+	TSC_hg19_v1_chr3_+_73046081 AF327345 NM_174907 BC128136 BC128137	-104373	+	TSC_hg19_v1_chr3_+_73045984 BC110889	-104502	+	AB384112 BC014432 BC150623 AB029018 BC152417 NM_015009 TSC_hg19_v1_chr3_-_73674093	523545	-	AB384611 BC150608 NM_020872	1419809	-	BC043342 BC094682 TSC_hg19_v1_chr3_-_75484194 BC016686 BC068011 BC068108	2333656	-	BC051316|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##BC064501|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##NM_018029|EBLN2|55096|endogenous Bornavirus-like nucleoprotein 2##AF327345|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##NM_174907|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128136|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC128137|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC110889|PPP4R2|151987|protein phosphatase 4, regulatory subunit 2##BC014432|PDZRN3|23024|PDZ domain containing ring finger 3##BC150623|PDZRN3|23024|PDZ domain containing ring finger 3##AB029018|PDZRN3|23024|PDZ domain containing ring finger 3##BC152417|PDZRN3|23024|PDZ domain containing ring finger 3##NM_015009|PDZRN3|23024|PDZ domain containing ring finger 3##BC150608|CNTN3|5067|contactin 3 (plasmacytoma associated)##NM_020872|CNTN3|5067|contactin 3 (plasmacytoma associated)##BC043342|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC094682|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC016686|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068011|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene##BC068108|FAM86DP|692099|family with sequence similarity 86, member D, pseudogene	0.0	0.877007	CTCF.p2:-87:0.877
chr4	89378125	89378275	reg1017603.p1	3.712	+	TSC_hg19_v1_chr4_+_89300147 AK092403 AX747525 BX647121	-78034	+	AK295832 TSC_hg19_v1_chr4_+_89300006 BC042047	-78203	+	TSC_hg19_v1_chr4_+_89299890 AF336798 AY653201 AY653202 AY653203 NM_001165136 NM_017912	-78318	+	TSC_hg19_v1_chr4_+_89378269 AY337518 NM_016323 AB027289 BC140716	122	+	TSC_hg19_v1_chr4_-_89444916 AB206972 BC007876 AK312082	66721	-	TSC_hg19_v1_chr4_-_89444931 NM_001042616 NM_032906	66752	-	AK092403|HERC6|55008|hect domain and RLD 6##BX647121|HERC6|55008|hect domain and RLD 6##AK295832|HERC6|55008|hect domain and RLD 6##BC042047|HERC6|55008|hect domain and RLD 6##AF336798|HERC6|55008|hect domain and RLD 6##AY653201|HERC6|55008|hect domain and RLD 6##AY653202|HERC6|55008|hect domain and RLD 6##AY653203|HERC6|55008|hect domain and RLD 6##NM_001165136|HERC6|55008|hect domain and RLD 6##NM_017912|HERC6|55008|hect domain and RLD 6##AY337518|HERC5|51191|hect domain and RLD 5##NM_016323|HERC5|51191|hect domain and RLD 5##AB027289|HERC5|51191|hect domain and RLD 5##BC140716|HERC5|51191|hect domain and RLD 5##AB206972|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##BC007876|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##AK312082|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##NM_001042616|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y##NM_032906|PIGY|84992|phosphatidylinositol glycan anchor biosynthesis, class Y	0.0	0.0	
chr5	10632336	10632516	reg1017577.p2	3.712	+	TSC_hg19_v1_chr5_+_10564441 NM_001164440	-67984	+	TSC_hg19_v1_chr5_+_10442085 AK098642 AF239723	-190274	+	NM_001201466 NM_031916 TSC_hg19_v1_chr5_+_10442034 BC014607	-190423	+	CR542184 AB590487 AK311783 TSC_hg19_v1_chr5_-_10761335 X76105 AK298670	128833	-	TSC_hg19_v1_chr5_-_10761341 BC002726	128916	-	TSC_hg19_v1_chr5_-_10761361 NM_004394	128973	-	NM_001164440|ANKRD33B|651746|ankyrin repeat domain 33B##AK098642|ROPN1L|83853|rhophilin associated tail protein 1-like##AF239723|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_001201466|ROPN1L|83853|rhophilin associated tail protein 1-like##NM_031916|ROPN1L|83853|rhophilin associated tail protein 1-like##BC014607|ROPN1L|83853|rhophilin associated tail protein 1-like##CR542184|DAP|1611|death-associated protein##AK311783|DAP|1611|death-associated protein##X76105|DAP|1611|death-associated protein##AK298670|DAP|1611|death-associated protein##BC002726|DAP|1611|death-associated protein##NM_004394|DAP|1611|death-associated protein	0.0	0.0	
chr6	136929356	136929523	reg1015446.p1	3.712	+	NM_001198616 NM_001198617 NM_003980	-57483	-	TSC_hg19_v1_chr6_-_136871561 AJ242501 AJ242502 CU693064 AB384694 DQ890946 DQ896812 BC025777 AK312789 X73882	-57818	-	AK296483 AK311270 NM_001198614 NM_001198618 TSC_hg19_v1_chr6_-_136847745 AK311114 AK311236 AK316062 NM_001198619 AK311234	-81642	-	TSC_hg19_v1_chr6_-_137113169 AB384845	183791	-	TSC_hg19_v1_chr6_-_137113545 AK310942 D84476	184109	-	BC054503 TSC_hg19_v1_chr6_-_137113611	184171	-	NM_001198616|MAP7|9053|microtubule-associated protein 7##NM_001198617|MAP7|9053|microtubule-associated protein 7##NM_003980|MAP7|9053|microtubule-associated protein 7##AJ242501|MAP7|9053|microtubule-associated protein 7##AJ242502|MAP7|9053|microtubule-associated protein 7##DQ890946|MAP7|9053|microtubule-associated protein 7##DQ896812|MAP7|9053|microtubule-associated protein 7##BC025777|MAP7|9053|microtubule-associated protein 7##AK312789|MAP7|9053|microtubule-associated protein 7##X73882|MAP7|9053|microtubule-associated protein 7##AK296483|MAP7|9053|microtubule-associated protein 7##AK311270|MAP7|9053|microtubule-associated protein 7##NM_001198614|MAP7|9053|microtubule-associated protein 7##NM_001198618|MAP7|9053|microtubule-associated protein 7##AK311114|MAP7|9053|microtubule-associated protein 7##AK311236|MAP7|9053|microtubule-associated protein 7##AK316062|MAP7|9053|microtubule-associated protein 7##NM_001198619|MAP7|9053|microtubule-associated protein 7##AK311234|MAP7|9053|microtubule-associated protein 7##AK310942|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##D84476|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5##BC054503|MAP3K5|4217|mitogen-activated protein kinase kinase kinase 5	0.976331	0.610874	denovo_WM_7:-26:0.430	denovo_WM_7:-27:0.474	CTCF.p2:65:0.611
chr9	132779187	132779285	reg1010879.p2	3.712	+	TSC_hg19_v1_chr9_+_132597736 BC039593 AY074877 NM_001008563	-181471	+	TSC_hg19_v1_chr9_+_132597727 BC033669	-181514	+	TSC_hg19_v1_chr9_+_132597691 NM_001110303 NM_006676	-181552	+	AB383906 TSC_hg19_v1_chr9_-_132805448 BC101755 BC143513 BC143514 BC143515 BC062463 AB011126 AF265550 AK023681	26118	-	TSC_hg19_v1_chr9_-_132805496 NM_015033	26252	-	BC039728 NM_001136557 NM_001136558 NM_020960	36748	+	BC039593|USP20|10868|ubiquitin specific peptidase 20##AY074877|USP20|10868|ubiquitin specific peptidase 20##NM_001008563|USP20|10868|ubiquitin specific peptidase 20##BC033669|USP20|10868|ubiquitin specific peptidase 20##NM_001110303|USP20|10868|ubiquitin specific peptidase 20##NM_006676|USP20|10868|ubiquitin specific peptidase 20##BC101755|FNBP1|23048|formin binding protein 1##BC143513|FNBP1|23048|formin binding protein 1##BC143514|FNBP1|23048|formin binding protein 1##BC143515|FNBP1|23048|formin binding protein 1##BC062463|FNBP1|23048|formin binding protein 1##AB011126|FNBP1|23048|formin binding protein 1##AF265550|FNBP1|23048|formin binding protein 1##AK023681|FNBP1|23048|formin binding protein 1##NM_015033|FNBP1|23048|formin binding protein 1##BC039728|GPR107|57720|G protein-coupled receptor 107##NM_001136557|GPR107|57720|G protein-coupled receptor 107##NM_001136558|GPR107|57720|G protein-coupled receptor 107##NM_020960|GPR107|57720|G protein-coupled receptor 107	0.0	0.0	
chr11	47123157	47123224	reg1013831.p2	3.711	+	TSC_hg19_v1_chr11_+_46958328 AK316318 NM_001003676 NM_001003677 NM_001003678 NM_024113 AK315639 BC001860 BC009455 AL136575 BC052291 BC013988 AK300813 AK025863 AK293609 AB528079 AM393584 AM393807 CR457351 CU679361 CU680726	-164898	+	TSC_hg19_v1_chr11_-_46940102 AB384531 AB231861 BC136667 BC136668 AB084910 NM_002334 BC110808	-183128	-	TSC_hg19_v1_chr11_-_46867841 NM_001008938 NM_014756	-255337	-	AK301785 AL834337 EU832352 EU832437 AK300347 BC036823 AK027482 TSC_hg19_v1_chr11_-_47198413 AK304541 BC030148	75209	-	TSC_hg19_v1_chr11_-_47198431 AK315992 AK098324	75243	-	NM_001242832 NM_032389	75485	-	AK316318|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003676|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003677|C11orf49|79096|chromosome 11 open reading frame 49##NM_001003678|C11orf49|79096|chromosome 11 open reading frame 49##NM_024113|C11orf49|79096|chromosome 11 open reading frame 49##AK315639|C11orf49|79096|chromosome 11 open reading frame 49##BC001860|C11orf49|79096|chromosome 11 open reading frame 49##BC009455|C11orf49|79096|chromosome 11 open reading frame 49##AL136575|C11orf49|79096|chromosome 11 open reading frame 49##BC052291|C11orf49|79096|chromosome 11 open reading frame 49##BC013988|C11orf49|79096|chromosome 11 open reading frame 49##AK300813|C11orf49|79096|chromosome 11 open reading frame 49##AK025863|C11orf49|79096|chromosome 11 open reading frame 49##AK293609|C11orf49|79096|chromosome 11 open reading frame 49##AM393584|C11orf49|79096|chromosome 11 open reading frame 49##AM393807|C11orf49|79096|chromosome 11 open reading frame 49##CR457351|C11orf49|79096|chromosome 11 open reading frame 49##AB231861|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136667|LRP4|4038|low density lipoprotein receptor-related protein 4##BC136668|LRP4|4038|low density lipoprotein receptor-related protein 4##AB084910|LRP4|4038|low density lipoprotein receptor-related protein 4##NM_002334|LRP4|4038|low density lipoprotein receptor-related protein 4##NM_001008938|CKAP5|9793|cytoskeleton associated protein 5##NM_014756|CKAP5|9793|cytoskeleton associated protein 5##AK301785|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AL834337|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832352|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##EU832437|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK300347|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC036823|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK027482|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK304541|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##BC030148|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK315992|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##AK098324|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_001242832|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2##NM_032389|ARFGAP2|84364|ADP-ribosylation factor GTPase activating protein 2	0.996704	0.0	denovo_WM_7:-33:0.978
chr12	52418767	52418912	reg1013594.p1	3.711	+	AK297526 NM_001202233	-2224	+	TSC_hg19_v1_chr12_+_52400728 BC053666 NM_181711	-18098	+	AK299496 NM_020327	-71676	+	NM_002135 NM_173157 TSC_hg19_v1_chr12_+_52445225 AK075491 AK075054 AK314437 BC016147 L13740 D49728	26377	+	TSC_hg19_v1_chr12_+_52463754 NM_001098673 NM_021934 AK021835	44915	+	TSC_hg19_v1_chr12_+_52463790 BC064533 BC005151 AF218031 BC009937	44959	+	AK297526|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_001202233|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC053666|GRASP|160622|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein##NM_181711|GRASP|160622|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein##AK299496|ACVR1B|91|activin A receptor, type IB##NM_020327|ACVR1B|91|activin A receptor, type IB##NM_002135|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_173157|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075491|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK075054|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##AK314437|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##BC016147|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##L13740|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##D49728|NR4A1|3164|nuclear receptor subfamily 4, group A, member 1##NM_001098673|C12orf44|60673|chromosome 12 open reading frame 44##NM_021934|C12orf44|60673|chromosome 12 open reading frame 44##AK021835|C12orf44|60673|chromosome 12 open reading frame 44##BC005151|C12orf44|60673|chromosome 12 open reading frame 44##AF218031|C12orf44|60673|chromosome 12 open reading frame 44##BC009937|C12orf44|60673|chromosome 12 open reading frame 44	0.999208	0.0	denovo_WM_7:16:0.239	denovo_WM_7:17:0.239	denovo_WM_7:18:0.239	denovo_WM_7:19:0.239
chr17	36772407	36772500	reg1013221.p2	3.711	+	TSC_hg19_v1_chr17_-_36762161 AB127405 NM_025248	-10257	-	BC029278 TSC_hg19_v1_chr17_-_36760969	-11515	-	TSC_hg19_v1_chr17_-_36729122 AK295027	-43331	-	TSC_hg19_v1_chr17_-_36831211 NM_001130677	58732	-	TSC_hg19_v1_chr17_+_36861421 BC064612	89146	+	TSC_hg19_v1_chr17_+_36861879 AK310435 AK310437 NM_005937 AB384930 CU687922 U07932 AB209633	89437	+	AB127405|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_025248|SRCIN1|80725|SRC kinase signaling inhibitor 1##BC029278|SRCIN1|80725|SRC kinase signaling inhibitor 1##AK295027|SRCIN1|80725|SRC kinase signaling inhibitor 1##NM_001130677|C17orf96|100170841|chromosome 17 open reading frame 96##BC064612|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310435|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AK310437|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##NM_005937|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##U07932|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6##AB209633|MLLT6|4302|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6	1.974494	0.0	denovo_WM_7:0:0.716	denovo_WM_7:-14:0.802
chr18	43547295	43547361	reg1016904.p1	3.711	+	AB046852 TSC_hg19_v1_chr18_-_43547294 NM_020964	-50	-	AK172835 NM_213602 AY971516 AK290402 AK290400 AK095432	-141704	+	NM_001146037	-240411	+	DQ893199 DQ893200 DQ893201 DQ893695 DQ896527 DQ896528 DQ896529 TSC_hg19_v1_chr18_-_43652247 BC035395 BC008216 NM_024430	104880	-	TSC_hg19_v1_chr18_-_43668143 AK129804	120849	-	TSC_hg19_v1_chr18_-_43669608 BC003119	122271	-	AB046852|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##NM_020964|EPG5|57724|ectopic P-granules autophagy protein 5 homolog (C. elegans)##AK172835|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_213602|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AY971516|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290402|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK290400|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##AK095432|SIGLEC15|284266|sialic acid binding Ig-like lectin 15##NM_001146037|SLC14A1|6563|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)##DQ893199|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893200|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893201|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ893695|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896527|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896528|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##DQ896529|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##BC035395|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##NM_024430|PSTPIP2|9050|proline-serine-threonine phosphatase interacting protein 2##AK129804|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle##BC003119|ATP5A1|498|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle	0.0	0.0	
chr19	20012868	20012955	reg1014016.p2	3.711	+	TSC_hg19_v1_chr19_+_20011754 NM_031218 BC020837 BC070372 BC107581 AK096342 BC058821 BC038096 BC136718 BC136719	-1127	+	TSC_hg19_v1_chr19_+_19976658 BC053607 BC014148 NM_021047 BC065572 AK074757 BC125063 BC125064	-36227	+	TSC_hg19_v1_chr19_-_19932557 AL136548 BC018100 BC034920 AK122848 AK095575 NM_001099269 NM_001145404	-80359	-	AK098164 NM_001077349	137127	-	AK027845 TSC_hg19_v1_chr19_-_20150315 AK096571 NM_033196	137386	-	TSC_hg19_v1_chr19_+_20188813 NM_007138 AK298173 M61870 BC137211	175926	+	NM_031218|ZNF93|81931|zinc finger protein 93##BC020837|ZNF93|81931|zinc finger protein 93##BC070372|ZNF93|81931|zinc finger protein 93##BC107581|ZNF93|81931|zinc finger protein 93##AK096342|ZNF93|81931|zinc finger protein 93##BC058821|ZNF93|81931|zinc finger protein 93##BC038096|ZNF93|81931|zinc finger protein 93##BC136718|ZNF93|81931|zinc finger protein 93##BC136719|ZNF93|81931|zinc finger protein 93##BC053607|ZNF253|56242|zinc finger protein 253##BC014148|ZNF253|56242|zinc finger protein 253##NM_021047|ZNF253|56242|zinc finger protein 253##BC065572|ZNF253|56242|zinc finger protein 253##AK074757|ZNF253|56242|zinc finger protein 253##BC125063|ZNF253|56242|zinc finger protein 253##BC125064|ZNF253|56242|zinc finger protein 253##AL136548|ZNF506|440515|zinc finger protein 506##BC018100|ZNF506|440515|zinc finger protein 506##BC034920|ZNF506|440515|zinc finger protein 506##AK122848|ZNF506|440515|zinc finger protein 506##AK095575|ZNF506|440515|zinc finger protein 506##NM_001099269|ZNF506|440515|zinc finger protein 506##NM_001145404|ZNF506|440515|zinc finger protein 506##AK098164|ZNF682|91120|zinc finger protein 682##NM_001077349|ZNF682|91120|zinc finger protein 682##AK027845|ZNF682|91120|zinc finger protein 682##AK096571|ZNF682|91120|zinc finger protein 682##NM_033196|ZNF682|91120|zinc finger protein 682##NM_007138|ZNF90|7643|zinc finger protein 90##AK298173|ZNF90|7643|zinc finger protein 90##M61870|ZNF90|7643|zinc finger protein 90##BC137211|ZNF90|7643|zinc finger protein 90	0.797323	0.0	denovo_WM_7:-8:0.797
chr6	70841536	70841653	reg1017587.p1	3.711	+	AK309023 TSC_hg19_v1_chr6_+_70577418	-264232	+	D38163 NM_001858 AK310621 BC070177 BC113362 BC113364	-265131	+	TSC_hg19_v1_chr6_-_70506885 BC047073 NM_018368	-334649	-	X54413 BC008620 BC063646 NM_078485	151238	-	X54412 BC015409 TSC_hg19_v1_chr6_-_71012827 NM_001851	171206	-	TSC_hg19_v1_chr6_+_71123122 NM_001105531 NM_020819	281519	+	D38163|COL19A1|1310|collagen, type XIX, alpha 1##NM_001858|COL19A1|1310|collagen, type XIX, alpha 1##AK310621|COL19A1|1310|collagen, type XIX, alpha 1##BC070177|COL19A1|1310|collagen, type XIX, alpha 1##BC113362|COL19A1|1310|collagen, type XIX, alpha 1##BC113364|COL19A1|1310|collagen, type XIX, alpha 1##BC047073|LMBRD1|55788|LMBR1 domain containing 1##NM_018368|LMBRD1|55788|LMBR1 domain containing 1##X54413|COL9A1|1297|collagen, type IX, alpha 1##BC008620|COL9A1|1297|collagen, type IX, alpha 1##BC063646|COL9A1|1297|collagen, type IX, alpha 1##NM_078485|COL9A1|1297|collagen, type IX, alpha 1##X54412|COL9A1|1297|collagen, type IX, alpha 1##BC015409|COL9A1|1297|collagen, type IX, alpha 1##NM_001851|COL9A1|1297|collagen, type IX, alpha 1##NM_001105531|FAM135A|57579|family with sequence similarity 135, member A##NM_020819|FAM135A|57579|family with sequence similarity 135, member A	0.394888	0.0	denovo_WM_7:-24:0.325
chr7	150808319	150808427	reg1018801.p1	3.711	+	TSC_hg19_v1_chr7_+_150783865 AF359283 NM_001042535 NM_031946 BC069236 AF413079 AB209781	-24454	+	TSC_hg19_v1_chr7_+_150782953 AK055393	-25432	+	TSC_hg19_v1_chr7_-_150780616 AY037155 BC000936 NM_001136044	-27769	-	TSC_hg19_v1_chr7_+_150811722 BC044644 EU831441 EU831533	3414	+	NM_001098834	56493	-	AF417920 NM_001142459 NM_001142460	76104	-	AF359283|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##NM_001042535|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##NM_031946|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##BC069236|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##AF413079|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##AB209781|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##AK055393|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##AY037155|TMUB1|83590|transmembrane and ubiquitin-like domain containing 1##BC000936|TMUB1|83590|transmembrane and ubiquitin-like domain containing 1##NM_001136044|TMUB1|83590|transmembrane and ubiquitin-like domain containing 1##BC044644|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##EU831441|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##EU831533|AGAP3|116988|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3##NM_001098834|GBX1|2636|gastrulation brain homeobox 1##AF417920|ASB10|136371|ankyrin repeat and SOCS box containing 10##NM_001142459|ASB10|136371|ankyrin repeat and SOCS box containing 10##NM_001142460|ASB10|136371|ankyrin repeat and SOCS box containing 10	0.0	0.994601	CTCF.p2:-49:0.995
chr7	157139111	157139216	reg1016498.p1	3.711	+	TSC_hg19_v1_chr7_+_157129699 AK301152 AK223601 BC110289 AK297796 AL136707 NM_005494 BC002446 NM_058246 AB209859 AB015798 AB015799 AF060703 AK297497 BC000177 EU075177 AK291953 AK293025 AF075601 AF080569 AK297989 AB014888	-9452	+	TSC_hg19_v1_chr7_+_157023934 AK098447	-115157	+	D13635 TSC_hg19_v1_chr7_+_156931668 BC014029	-207480	+	TSC_hg19_v1_chr7_+_157647233 BC034557	508111	+	DQ892399 EU176514 U66702 U65065 TSC_hg19_v1_chr7_-_158380485 U81561 AF007555 BC034040 BC071570 NM_002847 NM_130842 NM_130843	1241290	-	BC028618 TSC_hg19_v1_chr7_-_158497496 AK092008 AX747307 BC043404 BX537845 NM_017760	1358314	-	AK301152|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK223601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC110289|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297796|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AL136707|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_005494|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC002446|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##NM_058246|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB209859|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015798|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB015799|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF060703|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK297497|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##BC000177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##EU075177|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK291953|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AK293025|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF075601|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AF080569|TMEM135|65084|transmembrane protein 135##AK297989|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##AB014888|DNAJB6|10049|DnaJ (Hsp40) homolog, subfamily B, member 6##D13635|UBE3C|9690|ubiquitin protein ligase E3C##BC014029|UBE3C|9690|ubiquitin protein ligase E3C##BC034557|LOC100506585|100506585|uncharacterized LOC100506585##DQ892399|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##EU176514|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U66702|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U65065|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##U81561|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##AF007555|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC034040|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC071570|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_002847|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130842|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##NM_130843|PTPRN2|5799|protein tyrosine phosphatase, receptor type, N polypeptide 2##BC028618|NCAPG2|54892|non-SMC condensin II complex, subunit G2##AK092008|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BC043404|NCAPG2|54892|non-SMC condensin II complex, subunit G2##BX537845|NCAPG2|54892|non-SMC condensin II complex, subunit G2##NM_017760|NCAPG2|54892|non-SMC condensin II complex, subunit G2	0.0	0.0	
chr7	95130904	95131069	reg1001600.p5	3.711	+	BC113479 BC113481 NM_016116 NM_145872 AB463411 AF156779 HQ258383 BC025024	-15693	+	TSC_hg19_v1_chr7_-_95064341 AB102891 CU692318 AB591009 L48513 BC040010 AF001602 AF001601 BC073739 AK296029 BC093006 BC046160 AK291103 AK308065 AK315209 AK296636 BC009728 NM_000305 NM_001018161 AK301313	-66625	-	L48516 AF320003 AF329433 CU687094 TSC_hg19_v1_chr7_-_95025687 AK301772 BC070374 AK304282 NM_000940	-105330	-	BC040239 AK223328 U54617 TSC_hg19_v1_chr7_-_95225830 AK096428 AK312424 NM_002612	94877	-	NM_001135556 NM_001135557 NM_004411 TSC_hg19_v1_chr7_+_95401890 AK091339 BC032945 AK313148 BC053542 BC037854 AF063228 AK297427 BC022540 AF123074 BC012504	270922	+	CU675453 DQ892851 DQ896098 Y17571 AK294629 TSC_hg19_v1_chr7_-_95951381 BC006566 AJ496569 AK000766 AK222864 AF118838 NM_001160210 NM_014251	820416	-	BC113479|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC113481|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_016116|ASB4|51666|ankyrin repeat and SOCS box containing 4##NM_145872|ASB4|51666|ankyrin repeat and SOCS box containing 4##AF156779|ASB4|51666|ankyrin repeat and SOCS box containing 4##HQ258383|ASB4|51666|ankyrin repeat and SOCS box containing 4##BC025024|ASB4|51666|ankyrin repeat and SOCS box containing 4##AB102891|PON2|5445|paraoxonase 2##L48513|PON2|5445|paraoxonase 2##BC040010|PON2|5445|paraoxonase 2##AF001602|PON2|5445|paraoxonase 2##AF001601|PON2|5445|paraoxonase 2##AK296029|PON2|5445|paraoxonase 2##BC093006|PON2|5445|paraoxonase 2##BC046160|PON2|5445|paraoxonase 2##AK291103|PON2|5445|paraoxonase 2##AK308065|PON2|5445|paraoxonase 2##AK315209|PON2|5445|paraoxonase 2##AK296636|PON2|5445|paraoxonase 2##BC009728|PON2|5445|paraoxonase 2##NM_000305|PON2|5445|paraoxonase 2##NM_001018161|PON2|5445|paraoxonase 2##AK301313|PON2|5445|paraoxonase 2##L48516|PON3|5446|paraoxonase 3##AF320003|PON3|5446|paraoxonase 3##AF329433|PON3|5446|paraoxonase 3##BC070374|PON3|5446|paraoxonase 3##AK304282|PON3|5446|paraoxonase 3##NM_000940|PON3|5446|paraoxonase 3##BC040239|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK223328|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##U54617|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK096428|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##AK312424|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_002612|PDK4|5166|pyruvate dehydrogenase kinase, isozyme 4##NM_001135556|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_001135557|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##NM_004411|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK091339|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC032945|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK313148|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC053542|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC037854|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF063228|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AK297427|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC022540|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##AF123074|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##BC012504|DYNC1I1|1780|dynein, cytoplasmic 1, intermediate chain 1##DQ892851|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##DQ896098|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##Y17571|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK294629|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##BC006566|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AJ496569|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK000766|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AK222864|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##AF118838|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_001160210|SLC25A13|10165|solute carrier family 25, member 13 (citrin)##NM_014251|SLC25A13|10165|solute carrier family 25, member 13 (citrin)	0.0	0.0	
chr8	107669871	107670051	reg1011374.p2	3.711	+	AK296561 NM_001198532	-209810	+	TSC_hg19_v1_chr8_+_107282433 NM_001198533 NM_018002 AK124441 BC040619	-387538	+	AF119334 BC109222 BC109223 NM_012082	-1338815	+	AK123667 NM_181354 TSC_hg19_v1_chr8_+_107670081 BC035484	27	+	TSC_hg19_v1_chr8_+_107670114 AK292899 BC032710 BC019691	154	+	AK303695 NM_001198534 NM_001198535 AB075503 AK302844 AK316153 FN650109	68394	+	AK296561|OXR1|55074|oxidation resistance 1##NM_001198532|OXR1|55074|oxidation resistance 1##NM_001198533|OXR1|55074|oxidation resistance 1##NM_018002|OXR1|55074|oxidation resistance 1##AK124441|OXR1|55074|oxidation resistance 1##BC040619|OXR1|55074|oxidation resistance 1##AF119334|ZFPM2|23414|zinc finger protein, multitype 2##BC109222|ZFPM2|23414|zinc finger protein, multitype 2##BC109223|ZFPM2|23414|zinc finger protein, multitype 2##NM_012082|ZFPM2|23414|zinc finger protein, multitype 2##AK123667|OXR1|55074|oxidation resistance 1##NM_181354|OXR1|55074|oxidation resistance 1##BC035484|OXR1|55074|oxidation resistance 1##AK292899|OXR1|55074|oxidation resistance 1##BC032710|OXR1|55074|oxidation resistance 1##BC019691|OXR1|55074|oxidation resistance 1##AK303695|OXR1|55074|oxidation resistance 1##NM_001198534|OXR1|55074|oxidation resistance 1##NM_001198535|OXR1|55074|oxidation resistance 1##AB075503|OXR1|55074|oxidation resistance 1##AK302844|OXR1|55074|oxidation resistance 1##AK316153|OXR1|55074|oxidation resistance 1##FN650109|OXR1|55074|oxidation resistance 1	0.0	0.0	
chr8	41895343	41895454	reg1014003.p2	3.711	+	TSC_hg19_v1_chr8_-_41754260 AB209418 NM_001142446	-141088	-	AK026601 TSC_hg19_v1_chr8_+_41685847	-209573	+	M28880 NM_000037 NM_020475 NM_020476 NM_020477 X16609 TSC_hg19_v1_chr8_-_41655141	-240258	-	U47742 BC142659 BC142959 NM_001099412 NM_001099413 NM_006766 TSC_hg19_v1_chr8_-_41909506	14101	-	NM_001134296 NM_006803 AK315228 BX648354 BC056398 BX648390 D38293	115135	+	X07393 M15518 BC007231 BC002795 BC013968 BC018636 TSC_hg19_v1_chr8_-_42065084 AK297738 AK297937 AK299205 AK300984 AK313342 BC095403 X13097 X02901	169690	-	AB209418|ANK1|286|ankyrin 1, erythrocytic##NM_001142446|ANK1|286|ankyrin 1, erythrocytic##M28880|ANK1|286|ankyrin 1, erythrocytic##NM_000037|ANK1|286|ankyrin 1, erythrocytic##NM_020475|ANK1|286|ankyrin 1, erythrocytic##NM_020476|ANK1|286|ankyrin 1, erythrocytic##NM_020477|ANK1|286|ankyrin 1, erythrocytic##X16609|ANK1|286|ankyrin 1, erythrocytic##U47742|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142659|KAT6A|7994|K(lysine) acetyltransferase 6A##BC142959|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099412|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001099413|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_006766|KAT6A|7994|K(lysine) acetyltransferase 6A##NM_001134296|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##NM_006803|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##AK315228|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648354|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BC056398|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##BX648390|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##D38293|AP3M2|10947|adaptor-related protein complex 3, mu 2 subunit##X07393|PLAT|5327|plasminogen activator, tissue##M15518|PLAT|5327|plasminogen activator, tissue##BC007231|PLAT|5327|plasminogen activator, tissue##BC002795|PLAT|5327|plasminogen activator, tissue##BC013968|PLAT|5327|plasminogen activator, tissue##BC018636|PLAT|5327|plasminogen activator, tissue##AK297738|PLAT|5327|plasminogen activator, tissue##AK297937|PLAT|5327|plasminogen activator, tissue##AK299205|PLAT|5327|plasminogen activator, tissue##AK300984|PLAT|5327|plasminogen activator, tissue##AK313342|PLAT|5327|plasminogen activator, tissue##BC095403|PLAT|5327|plasminogen activator, tissue##X13097|PLAT|5327|plasminogen activator, tissue##X02901|PLAT|5327|plasminogen activator, tissue	0.0	0.0	
chrX	103416873	103416999	reg1015093.p1	3.711	+	TSC_hg19_v1_chrX_+_103411251 BC017665	-5669	+	TSC_hg19_v1_chrX_+_103411133 AK091221 AX746858 BC057847 NM_207318	-5812	+	TSC_hg19_v1_chrX_-_103401691 AL833609 NM_001012755	-15279	-	BC042633 AY114148 BC053599 NM_153448 AK097704	82650	-	AK290196 TSC_hg19_v1_chrX_+_103810879	393943	+	TSC_hg19_v1_chrX_+_103810991 AJ272208 NM_017416	394056	+	BC017665|FAM199X|139231|family with sequence similarity 199, X-linked##AK091221|FAM199X|139231|family with sequence similarity 199, X-linked##BC057847|FAM199X|139231|family with sequence similarity 199, X-linked##NM_207318|FAM199X|139231|family with sequence similarity 199, X-linked##AL833609|MCART6|401612|mitochondrial carrier triple repeat 6##NM_001012755|MCART6|401612|mitochondrial carrier triple repeat 6##BC042633|ESX1|80712|ESX homeobox 1##AY114148|ESX1|80712|ESX homeobox 1##BC053599|ESX1|80712|ESX homeobox 1##NM_153448|ESX1|80712|ESX homeobox 1##AK097704|ESX1|80712|ESX homeobox 1##AK290196|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##AJ272208|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2##NM_017416|IL1RAPL2|26280|interleukin 1 receptor accessory protein-like 2	0.989656	0.0	denovo_WM_7:-4:0.236	denovo_WM_7:-5:0.236	denovo_WM_7:-6:0.236	denovo_WM_7:-7:0.236
chr12	57632948	57633055	reg1013576.p1	3.710	+	CR457176 AF164796 AK129629 TSC_hg19_v1_chr12_-_57630888	-2122	-	NM_001166358 BX647711 AK301443 TSC_hg19_v1_chr12_+_57623972 BX648847 NM_001166359 NM_001166357 BC004189 BC004215 BC008711 AK296183 AK297173 AK315916	-9013	+	NM_001166356 NM_005412 TSC_hg19_v1_chr12_+_57623504 AK055053 AK223555 AK298231 AK301339 AK303827 BC032584 BC044211 AK295941 BC008066 BC012833 BC011911 BC091501 CU680112 CU689432 AB527799 BT006866 DQ891309 DQ894430	-9543	+	BC011910 NM_020142 AK094275	1499	-	TSC_hg19_v1_chr12_-_57642922 CU675915	9979	-	AK300688 BC008069 AK057013 AK311513 NM_145064	11935	-	CR457176|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##AF164796|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##AK129629|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##NM_001166358|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BX647711|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK301443|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BX648847|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166359|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166357|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC008711|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK296183|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK297173|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK315916|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_001166356|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##NM_005412|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK055053|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK223555|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK298231|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK301339|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK303827|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC032584|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC044211|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##AK295941|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC008066|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC011911|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC091501|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BT006866|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##DQ891309|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##DQ894430|SHMT2|6472|serine hydroxymethyltransferase 2 (mitochondrial)##BC011910|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##NM_020142|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##AK094275|NDUFA4L2|56901|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2##AK300688|STAC3|246329|SH3 and cysteine rich domain 3##BC008069|STAC3|246329|SH3 and cysteine rich domain 3##AK057013|STAC3|246329|SH3 and cysteine rich domain 3##AK311513|STAC3|246329|SH3 and cysteine rich domain 3##NM_145064|STAC3|246329|SH3 and cysteine rich domain 3	0.0	1.013596	CTCF.p2:9:0.993
chr16	73635990	73636126	reg1004135.p3	3.710	+	D10250 NM_001164766 TSC_hg19_v1_chr16_-_73092633	-543472	-	TSC_hg19_v1_chr16_-_73082169 L32832 NM_006885	-553837	-	TSC_hg19_v1_chr16_-_72991733 BC029653	-644353	-	TSC_hg19_v1_chr16_+_74330711 NM_002811 BC000338 BC012606 AK315381 AK301996	694635	+	TSC_hg19_v1_chr16_+_74330732 D50063 AB528643 CU680372	694713	+	TSC_hg19_v1_chr16_-_74401811 AK124154	765754	-	D10250|ZFHX3|463|zinc finger homeobox 3##NM_001164766|ZFHX3|463|zinc finger homeobox 3##L32832|ZFHX3|463|zinc finger homeobox 3##NM_006885|ZFHX3|463|zinc finger homeobox 3##BC029653|ZFHX3|463|zinc finger homeobox 3##NM_002811|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC000338|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##BC012606|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK315381|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##AK301996|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7##D50063|PSMD7|5713|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	0.207621	0.0	
chr19	6517388	6517568	reg1008351.p2	3.710	+	CU675455 EU831818 EU831895 AB590868 TSC_hg19_v1_chr19_-_6502321 BC006570 AK095202 AK294102 AK295917 AK075307 BC013683 NM_006087 AK293503	-15161	-	TSC_hg19_v1_chr19_-_6481799 AK303509 BC033437 AK026410 AK225623 AK303226 NM_024898	-35695	-	NM_139161 NM_174881 AK292956 AF503290 AY358684 BC018409 AK000653	-53194	+	NM_003811 BC104805 BC104807 TSC_hg19_v1_chr19_+_6531036 AK313999 AB590869 U03398	13548	+	AB590870 BT007211 TSC_hg19_v1_chr19_-_6591039	73554	-	TSC_hg19_v1_chr19_-_6591126 BC000725 AK298467	73628	-	EU831818|TUBB4A|10382|tubulin, beta 4A class IVa##EU831895|TUBB4A|10382|tubulin, beta 4A class IVa##BC006570|TUBB4A|10382|tubulin, beta 4A class IVa##AK095202|TUBB4A|10382|tubulin, beta 4A class IVa##AK295917|TUBB4A|10382|tubulin, beta 4A class IVa##AK075307|TUBB4A|10382|tubulin, beta 4A class IVa##BC013683|TUBB4A|10382|tubulin, beta 4A class IVa##NM_006087|TUBB4A|10382|tubulin, beta 4A class IVa##AK293503|TUBB4A|10382|tubulin, beta 4A class IVa##AK303509|DENND1C|79958|DENN/MADD domain containing 1C##BC033437|DENND1C|79958|DENN/MADD domain containing 1C##AK026410|DENND1C|79958|DENN/MADD domain containing 1C##AK225623|DENND1C|79958|DENN/MADD domain containing 1C##AK303226|DENND1C|79958|DENN/MADD domain containing 1C##NM_024898|DENND1C|79958|DENN/MADD domain containing 1C##NM_139161|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_174881|CRB3|92359|crumbs homolog 3 (Drosophila)##AK292956|CRB3|92359|crumbs homolog 3 (Drosophila)##AF503290|CRB3|92359|crumbs homolog 3 (Drosophila)##AY358684|CRB3|92359|crumbs homolog 3 (Drosophila)##BC018409|CRB3|92359|crumbs homolog 3 (Drosophila)##AK000653|CRB3|92359|crumbs homolog 3 (Drosophila)##NM_003811|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104805|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BC104807|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##AK313999|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##U03398|TNFSF9|8744|tumor necrosis factor (ligand) superfamily, member 9##BT007211|CD70|970|CD70 molecule##BC000725|CD70|970|CD70 molecule##AK298467|CD70|970|CD70 molecule	0.0	0.0	
chr20	46119882	46119957	reg1014183.p2	3.710	+	TSC_hg19_v1_chr20_-_45985442 AK225857 AF454056 AK294511 AK299899 AK000275 BC136608 BC144289 BC092432 BC146802 NM_012408 NM_183047 NM_183048 BX641005	-134431	-	TSC_hg19_v1_chr20_-_45976626 DQ082998 DQ082999 DQ368669 DQ368670 DQ368671 DQ368672 DQ368673 DQ368674 DQ368675 DQ368676 DQ368677 DQ368678 DQ368679 DQ368680	-143272	-	TSC_hg19_v1_chr20_-_45927496 BC030721	-192350	-	NM_001174087 NM_001174088 NM_006534 NM_181659 TSC_hg19_v1_chr20_+_46130607 BC092516	10703	+	AK289683 AK308346 AF012108 TSC_hg19_v1_chr20_+_46130679 AB209863 AF016031 BC036778 AF036892 BC119001 BC122547	10765	+	TSC_hg19_v1_chr20_-_46414755 AK308829 AB033073 NM_018837	294833	-	AK225857|ZMYND8|23613|zinc finger, MYND-type containing 8##AF454056|ZMYND8|23613|zinc finger, MYND-type containing 8##AK294511|ZMYND8|23613|zinc finger, MYND-type containing 8##AK299899|ZMYND8|23613|zinc finger, MYND-type containing 8##AK000275|ZMYND8|23613|zinc finger, MYND-type containing 8##BC136608|ZMYND8|23613|zinc finger, MYND-type containing 8##BC144289|ZMYND8|23613|zinc finger, MYND-type containing 8##BC092432|ZMYND8|23613|zinc finger, MYND-type containing 8##BC146802|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_012408|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183047|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_183048|ZMYND8|23613|zinc finger, MYND-type containing 8##BX641005|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082998|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ082999|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368669|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368670|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368671|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368672|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368673|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368674|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368675|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368676|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368677|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368678|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368679|ZMYND8|23613|zinc finger, MYND-type containing 8##DQ368680|ZMYND8|23613|zinc finger, MYND-type containing 8##BC030721|ZMYND8|23613|zinc finger, MYND-type containing 8##NM_001174087|NCOA3|8202|nuclear receptor coactivator 3##NM_001174088|NCOA3|8202|nuclear receptor coactivator 3##NM_006534|NCOA3|8202|nuclear receptor coactivator 3##NM_181659|NCOA3|8202|nuclear receptor coactivator 3##BC092516|NCOA3|8202|nuclear receptor coactivator 3##AK289683|NCOA3|8202|nuclear receptor coactivator 3##AK308346|NCOA3|8202|nuclear receptor coactivator 3##AF012108|NCOA3|8202|nuclear receptor coactivator 3##AB209863|NCOA3|8202|nuclear receptor coactivator 3##AF016031|NCOA3|8202|nuclear receptor coactivator 3##AF036892|NCOA3|8202|nuclear receptor coactivator 3##BC119001|NCOA3|8202|nuclear receptor coactivator 3##BC122547|NCOA3|8202|nuclear receptor coactivator 3##AK308829|SULF2|55959|sulfatase 2##AB033073|SULF2|55959|sulfatase 2##NM_018837|SULF2|55959|sulfatase 2	0.029398	0.0	
chr2	114659692	114659819	reg1018489.p1	3.710	+	TSC_hg19_v1_chr2_+_114647862 AB527566 CU692216	-11905	+	TSC_hg19_v1_chr2_+_114647707 AK312659	-12047	+	AK300224 TSC_hg19_v1_chr2_+_114647699	-12054	+	AB209353 TSC_hg19_v1_chr2_+_114674521	14758	+	BC030832 NM_020868	540143	+	AK055256 BC038514 NM_001178036	559411	+	AK312659|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AK300224|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##AB209353|ACTR3|10096|ARP3 actin-related protein 3 homolog (yeast)##BC030832|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_020868|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##AK055256|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##BC038514|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)##NM_001178036|DPP10|57628|dipeptidyl-peptidase 10 (non-functional)	0.0	0.0	
chr7	69289634	69289814	reg1001194.p2	3.710	+	TSC_hg19_v1_chr7_+_69064580 BC011643	-225136	+	TSC_hg19_v1_chr7_+_69064316 AF326917 AB007902	-225395	+	TSC_hg19_v1_chr7_+_69063768 NM_001127231 BC064693 NM_001127232 NM_015570	-225888	+	TSC_hg19_v1_chr7_+_70231164 AK296981	941481	+	AB078148 AB527411 AF410457 AJ626726 BC067524 BC067525 BC069624 BC069628 BC069636 BC069645 BC069997 CU686952 NM_022479	1308064	+	AK123862 TSC_hg19_v1_chr7_-_71801809	2512054	-	BC011643|AUTS2|26053|autism susceptibility candidate 2##AF326917|AUTS2|26053|autism susceptibility candidate 2##AB007902|AUTS2|26053|autism susceptibility candidate 2##NM_001127231|AUTS2|26053|autism susceptibility candidate 2##BC064693|AUTS2|26053|autism susceptibility candidate 2##NM_001127232|AUTS2|26053|autism susceptibility candidate 2##NM_015570|AUTS2|26053|autism susceptibility candidate 2##AK296981|AUTS2|26053|autism susceptibility candidate 2##AB078148|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AF410457|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AJ626726|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067524|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC067525|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069624|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069628|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069636|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069645|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##BC069997|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##NM_022479|WBSCR17|64409|Williams-Beuren syndrome chromosome region 17##AK123862|CALN1|83698|calneuron 1	0.0	0.0	
chr9	21432844	21432941	reg1018260.p1	3.710	+	K01900 NM_002170 BC104828 BC104830 V00545 V00550	-23752	+	AY255838 V00548 AB590747 CR541921 JN848522 BC074936 BC074937 BC104163 BC104164 M54886 V00544 V00549 NM_000605	-47566	-	AB464595 CU686802 HQ258738 JN848523 BC093988 BC112002 BC069427 NM_006900	-64853	-	NM_024013 V00538 V00537 BC112300 BC112302 BC074928 BC074929 AB464595 CU686802 HQ258738 JN848523	7587	+	AY358570 NM_176891	49419	-	AK124391 TSC_hg19_v1_chr9_-_21559834	126890	-	K01900|IFNA8|3445|interferon, alpha 8##NM_002170|IFNA8|3445|interferon, alpha 8##BC104828|IFNA8|3445|interferon, alpha 8##BC104830|IFNA8|3445|interferon, alpha 8##V00545|IFNA8|3445|interferon, alpha 8##V00550|IFNA8|3445|interferon, alpha 8##AY255838|IFNA2|3440|interferon, alpha 2##V00548|IFNA2|3440|interferon, alpha 2##CR541921|IFNA2|3440|interferon, alpha 2##BC074936|IFNA2|3440|interferon, alpha 2##BC074937|IFNA2|3440|interferon, alpha 2##BC104163|IFNA2|3440|interferon, alpha 2##BC104164|IFNA2|3440|interferon, alpha 2##M54886|IFNA2|3440|interferon, alpha 2##V00544|IFNA2|3440|interferon, alpha 2##V00549|IFNA2|3440|interferon, alpha 2##NM_000605|IFNA2|3440|interferon, alpha 2##HQ258738|IFNA1|3439|interferon, alpha 1##BC093988|IFNA13|3447|interferon, alpha 13##BC112002|IFNA1|3439|interferon, alpha 1##BC069427|IFNA13|3447|interferon, alpha 13##NM_006900|IFNA13|3447|interferon, alpha 13##NM_024013|IFNA1|3439|interferon, alpha 1##V00538|IFNA1|3439|interferon, alpha 1##V00537|IFNA1|3439|interferon, alpha 1##BC112300|IFNA1|3439|interferon, alpha 1##BC112302|IFNA1|3439|interferon, alpha 1##BC074928|IFNA1|3439|interferon, alpha 1##BC074929|IFNA1|3439|interferon, alpha 1##HQ258738|IFNA1|3439|interferon, alpha 1##AY358570|IFNE|338376|interferon, epsilon##NM_176891|IFNE|338376|interferon, epsilon##AK124391|MIR31HG|554202|MIR31 host gene (non-protein coding)	0.0	0.0